##gff-version 3 ##sequence-region scaffold_2897 1 2001 ##gff-version 3 ##sequence-region scaffold_2895 1 2003 scaffold_2895 . biological_region 522 527 0.999 + . logic_name=eponine scaffold_2895 ensembl protein_coding_gene 21 622 . - . ID=Phyra87944;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2895000001;logic_name=jgi_phyra1 scaffold_2895 ensembl transcript 21 622 . - . ID=Phyra87944;Parent=Phyra87944;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2895 . CDS 21 622 . - 0 ID=Phyra87944;Parent=Phyra87944;rank=1 scaffold_2895 . exon 21 622 . - . ID=Phyra87944.1;Parent=Phyra87944;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2895 ensembl protein_coding_gene 1529 1993 . + . ID=Phyra87945;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2895000002;logic_name=jgi_phyra1 scaffold_2895 ensembl transcript 1529 1993 . + . ID=Phyra87945;Parent=Phyra87945;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2895 . CDS 1529 1993 . + 0 ID=Phyra87945;Parent=Phyra87945;rank=1 scaffold_2895 . exon 1529 1993 . + . ID=Phyra87945.1;Parent=Phyra87945;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2893 1 2008 scaffold_2893 . repeat_region 1021 1033 . ? . description=dust scaffold_2893 ensembl protein_coding_gene 448 1738 . + . ID=Phyra87942;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2893000001;logic_name=jgi_phyra1 scaffold_2893 ensembl transcript 448 1738 . + . ID=Phyra87942;Parent=Phyra87942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2893 . CDS 448 1032 . + 0 ID=Phyra87942;Parent=Phyra87942;rank=1 scaffold_2893 . exon 448 1032 . + . ID=Phyra87942.1;Parent=Phyra87942;constitutive=1;rank=1 scaffold_2893 . CDS 1078 1224 . + 0 ID=Phyra87942;Parent=Phyra87942;rank=2 scaffold_2893 . exon 1078 1224 . + . ID=Phyra87942.2;Parent=Phyra87942;constitutive=1;rank=2 scaffold_2893 . CDS 1299 1461 . + 0 ID=Phyra87942;Parent=Phyra87942;rank=3 scaffold_2893 . exon 1299 1461 . + . ID=Phyra87942.3;Parent=Phyra87942;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2893 . CDS 1530 1738 . + 0 ID=Phyra87942;Parent=Phyra87942;rank=4 scaffold_2893 . exon 1530 1738 . + . ID=Phyra87942.4;Parent=Phyra87942;constitutive=1;ensembl_phase=1;rank=4 ##gff-version 3 ##sequence-region scaffold_2894 1 2008 scaffold_2894 . repeat_region 1395 1436 . ? . description=trf scaffold_2894 ensembl protein_coding_gene 1548 2006 . - . ID=Phyra46459;biotype=protein_coding;external_name=gwEuk.2894.4.1;logic_name=jgi_phyra1 scaffold_2894 ensembl transcript 1548 2006 . - . ID=Phyra46459;Parent=Phyra46459;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2894 . CDS 1548 2006 . - 0 ID=Phyra46459;Parent=Phyra46459;rank=1 scaffold_2894 . exon 1548 2006 . - . ID=Phyra46459.1;Parent=Phyra46459;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2892 1 2014 scaffold_2892 . repeat_region 1392 1430 . ? . description=trf scaffold_2892 ensembl protein_coding_gene 1266 1971 . - . ID=Phyra87941;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2892000001;logic_name=jgi_phyra1 scaffold_2892 ensembl transcript 1266 1971 . - . ID=Phyra87941;Parent=Phyra87941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2892 . CDS 1266 1477 . - 0 ID=Phyra87941;Parent=Phyra87941;rank=2 scaffold_2892 . exon 1266 1477 . - . ID=Phyra87941.2;Parent=Phyra87941;constitutive=1;ensembl_phase=1;rank=2 scaffold_2892 . CDS 1708 1969 . - 0 ID=Phyra87941;Parent=Phyra87941;rank=1 scaffold_2892 . exon 1708 1971 . - . ID=Phyra87941.1;Parent=Phyra87941;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2891 1 2015 scaffold_2891 . repeat_region 156 195 . ? . description=trf scaffold_2891 . repeat_region 167 195 . ? . description=trf scaffold_2891 ensembl protein_coding_gene 74 1252 . - . ID=Phyra87940;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2891000001;logic_name=jgi_phyra1 scaffold_2891 ensembl transcript 74 1252 . - . ID=Phyra87940;Parent=Phyra87940;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2891 . CDS 74 1252 . - 0 ID=Phyra87940;Parent=Phyra87940;rank=1 scaffold_2891 . exon 74 1252 . - . ID=Phyra87940.1;Parent=Phyra87940;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2890 1 2019 scaffold_2890 . biological_region 1607 1609 0.999 - . logic_name=eponine scaffold_2890 . biological_region 1969 1970 0.999 - . logic_name=eponine scaffold_2890 ensembl protein_coding_gene 76 2016 . + . ID=Phyra87939;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2890000001;logic_name=jgi_phyra1 scaffold_2890 ensembl transcript 76 2016 . + . ID=Phyra87939;Parent=Phyra87939;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2890 . CDS 76 147 . + 0 ID=Phyra87939;Parent=Phyra87939;rank=1 scaffold_2890 . exon 76 147 . + . ID=Phyra87939.1;Parent=Phyra87939;constitutive=1;rank=1 scaffold_2890 . CDS 238 1237 . + 0 ID=Phyra87939;Parent=Phyra87939;rank=2 scaffold_2890 . exon 238 1237 . + . ID=Phyra87939.2;Parent=Phyra87939;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2890 . CDS 1305 2016 . + 0 ID=Phyra87939;Parent=Phyra87939;rank=3 scaffold_2890 . exon 1305 2016 . + . ID=Phyra87939.3;Parent=Phyra87939;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_2889 1 2020 ##gff-version 3 ##sequence-region scaffold_2887 1 2021 scaffold_2887 . biological_region 541 542 0.999 + . logic_name=eponine scaffold_2887 . biological_region 723 724 0.999 + . logic_name=eponine scaffold_2887 . biological_region 776 781 0.999 + . logic_name=eponine scaffold_2887 . biological_region 817 820 0.999 - . logic_name=eponine scaffold_2887 . biological_region 836 840 0.999 - . logic_name=eponine scaffold_2887 . biological_region 854 857 0.999 - . logic_name=eponine scaffold_2887 ensembl protein_coding_gene 75 911 . + . ID=Phyra87936;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2887000001;logic_name=jgi_phyra1 scaffold_2887 ensembl transcript 75 911 . + . ID=Phyra87936;Parent=Phyra87936;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2887 . CDS 75 911 . + 0 ID=Phyra87936;Parent=Phyra87936;rank=1 scaffold_2887 . exon 75 911 . + . ID=Phyra87936.1;Parent=Phyra87936;constitutive=1;rank=1 scaffold_2887 ensembl protein_coding_gene 1132 2015 . + . ID=Phyra87937;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2887000002;logic_name=jgi_phyra1 scaffold_2887 ensembl transcript 1132 2015 . + . ID=Phyra87937;Parent=Phyra87937;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2887 . CDS 1132 1564 . + 0 ID=Phyra87937;Parent=Phyra87937;rank=1 scaffold_2887 . exon 1132 1564 . + . ID=Phyra87937.1;Parent=Phyra87937;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2887 . CDS 1641 2015 . + 0 ID=Phyra87937;Parent=Phyra87937;rank=2 scaffold_2887 . exon 1641 2015 . + . ID=Phyra87937.2;Parent=Phyra87937;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2888 1 2022 scaffold_2888 ensembl protein_coding_gene 562 1965 . - . ID=Phyra87938;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2888000001;logic_name=jgi_phyra1 scaffold_2888 ensembl transcript 562 1965 . - . ID=Phyra87938;Parent=Phyra87938;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2888 . CDS 562 1965 . - 0 ID=Phyra87938;Parent=Phyra87938;rank=1 scaffold_2888 . exon 562 1965 . - . ID=Phyra87938.1;Parent=Phyra87938;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2886 1 2024 scaffold_2886 . repeat_region 297 306 . ? . description=dust scaffold_2886 . repeat_region 681 726 . ? . description=trf scaffold_2886 ensembl protein_coding_gene 1659 2018 . - . ID=Phyra87935;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2886000001;logic_name=jgi_phyra1 scaffold_2886 ensembl transcript 1659 2018 . - . ID=Phyra87935;Parent=Phyra87935;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2886 . CDS 1659 2018 . - 0 ID=Phyra87935;Parent=Phyra87935;rank=1 scaffold_2886 . exon 1659 2018 . - . ID=Phyra87935.1;Parent=Phyra87935;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2884 1 2026 scaffold_2884 ensembl protein_coding_gene 50 2022 . + . ID=Phyra87934;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2884000001;logic_name=jgi_phyra1 scaffold_2884 ensembl transcript 50 2022 . + . ID=Phyra87934;Parent=Phyra87934;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2884 . CDS 50 2022 . + 0 ID=Phyra87934;Parent=Phyra87934;rank=1 scaffold_2884 . exon 50 2022 . + . ID=Phyra87934.1;Parent=Phyra87934;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2885 1 2026 ##gff-version 3 ##sequence-region scaffold_2883 1 2027 scaffold_2883 . repeat_region 102 144 . ? . description=trf scaffold_2883 . repeat_region 1429 1471 . ? . description=trf scaffold_2883 ensembl protein_coding_gene 195 1250 . - . ID=Phyra87933;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2883000001;logic_name=jgi_phyra1 scaffold_2883 ensembl transcript 195 1250 . - . ID=Phyra87933;Parent=Phyra87933;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2883 . CDS 195 1250 . - 0 ID=Phyra87933;Parent=Phyra87933;rank=1 scaffold_2883 . exon 195 1250 . - . ID=Phyra87933.1;Parent=Phyra87933;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2882 1 2029 scaffold_2882 . repeat_region 15 24 . ? . description=dust scaffold_2882 . repeat_region 703 712 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2881 1 2033 scaffold_2881 . repeat_region 714 823 . ? . description=dust scaffold_2881 . repeat_region 715 764 . ? . description=trf scaffold_2881 . repeat_region 759 795 . ? . description=trf scaffold_2881 . repeat_region 795 822 . ? . description=trf scaffold_2881 . repeat_region 939 950 . ? . description=dust scaffold_2881 . repeat_region 1508 1569 . + . description=(TGAG)n scaffold_2881 . repeat_region 1514 1563 . ? . description=trf scaffold_2881 . repeat_region 1518 1564 . ? . description=dust scaffold_2881 . repeat_region 1519 1566 . ? . description=trf scaffold_2881 ensembl tRNA_gene 605 676 . - . ID=EPrPRAG00000000016;biotype=tRNA;description=tRNA-Thr for anticodon UGU [Source:TRNASCAN_SE%3BAcc:tRNA-Thr];external_name=tRNA-Thr;logic_name=ncrna_eg scaffold_2881 ensembl transcript 605 676 . - . ID=EPrPRAT00000000016;Parent=EPrPRAG00000000016;biotype=tRNA;logic_name=ncrna_eg scaffold_2881 . exon 605 676 . - . ID=EPrPRAE00000000016;Parent=EPrPRAT00000000016;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2879 1 2037 scaffold_2879 . biological_region 1536 1536 0.999 + . logic_name=eponine scaffold_2879 ensembl protein_coding_gene 1363 1833 . - . ID=Phyra87931;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2879000001;logic_name=jgi_phyra1 scaffold_2879 ensembl transcript 1363 1833 . - . ID=Phyra87931;Parent=Phyra87931;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2879 . CDS 1363 1833 . - 0 ID=Phyra87931;Parent=Phyra87931;rank=1 scaffold_2879 . exon 1363 1833 . - . ID=Phyra87931.1;Parent=Phyra87931;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2880 1 2037 scaffold_2880 . repeat_region 151 372 . + . description=GypsyPi-1c_I-int scaffold_2880 . repeat_region 620 644 . ? . description=trf scaffold_2880 . repeat_region 620 644 . ? . description=dust scaffold_2880 . biological_region 1333 1336 0.999 + . logic_name=eponine scaffold_2880 . biological_region 1518 1525 0.999 + . logic_name=eponine scaffold_2880 ensembl protein_coding_gene 389 1997 . - . ID=Phyra87932;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2880000001;logic_name=jgi_phyra1 scaffold_2880 ensembl transcript 389 1997 . - . ID=Phyra87932;Parent=Phyra87932;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2880 . CDS 389 586 . - 0 ID=Phyra87932;Parent=Phyra87932;rank=4 scaffold_2880 . exon 389 586 . - . ID=Phyra87932.4;Parent=Phyra87932;constitutive=1;rank=4 scaffold_2880 . CDS 887 1020 . - 0 ID=Phyra87932;Parent=Phyra87932;rank=3 scaffold_2880 . exon 887 1020 . - . ID=Phyra87932.3;Parent=Phyra87932;constitutive=1;ensembl_phase=1;rank=3 scaffold_2880 . CDS 1045 1086 . - 0 ID=Phyra87932;Parent=Phyra87932;rank=2 scaffold_2880 . exon 1045 1086 . - . ID=Phyra87932.2;Parent=Phyra87932;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2880 . CDS 1469 1997 . - 0 ID=Phyra87932;Parent=Phyra87932;rank=1 scaffold_2880 . exon 1469 1997 . - . ID=Phyra87932.1;Parent=Phyra87932;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2877 1 2039 scaffold_2877 . repeat_region 4 1678 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_2878 1 2039 scaffold_2878 . repeat_region 21 57 . ? . description=trf scaffold_2878 . repeat_region 968 1020 . ? . description=trf scaffold_2878 . repeat_region 968 1024 . ? . description=trf scaffold_2878 . repeat_region 1129 1188 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2874 1 2044 scaffold_2874 . repeat_region 191 247 . ? . description=trf scaffold_2874 . repeat_region 204 247 . ? . description=trf scaffold_2874 ensembl protein_coding_gene 941 2021 . + . ID=Phyra87929;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2874000001;logic_name=jgi_phyra1 scaffold_2874 ensembl transcript 941 2021 . + . ID=Phyra87929;Parent=Phyra87929;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2874 . CDS 941 2021 . + 0 ID=Phyra87929;Parent=Phyra87929;rank=1 scaffold_2874 . exon 941 2021 . + . ID=Phyra87929.1;Parent=Phyra87929;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2876 1 2044 scaffold_2876 . repeat_region 562 591 . ? . description=trf scaffold_2876 . repeat_region 1241 1284 . ? . description=trf scaffold_2876 . repeat_region 1672 1684 . ? . description=dust scaffold_2876 . repeat_region 1939 1996 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2873 1 2045 scaffold_2873 . biological_region 701 705 0.999 + . logic_name=eponine scaffold_2873 . repeat_region 920 1208 . ? . description=trf scaffold_2873 . repeat_region 944 1068 . ? . description=trf scaffold_2873 . repeat_region 1012 1208 . ? . description=trf scaffold_2873 ensembl protein_coding_gene 731 1386 . - . ID=Phyra87928;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2873000001;logic_name=jgi_phyra1 scaffold_2873 ensembl transcript 731 1386 . - . ID=Phyra87928;Parent=Phyra87928;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2873 . CDS 731 896 . - 0 ID=Phyra87928;Parent=Phyra87928;rank=3 scaffold_2873 . exon 731 896 . - . ID=Phyra87928.3;Parent=Phyra87928;constitutive=1;ensembl_phase=2;rank=3 scaffold_2873 . CDS 1087 1096 . - 0 ID=Phyra87928;Parent=Phyra87928;rank=2 scaffold_2873 . exon 1087 1096 . - . ID=Phyra87928.2;Parent=Phyra87928;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2873 . CDS 1152 1386 . - 0 ID=Phyra87928;Parent=Phyra87928;rank=1 scaffold_2873 . exon 1152 1386 . - . ID=Phyra87928.1;Parent=Phyra87928;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2875 1 2046 scaffold_2875 . repeat_region 673 736 . ? . description=dust scaffold_2875 . biological_region 1275 1278 0.999 + . logic_name=eponine scaffold_2875 ensembl protein_coding_gene 1 620 . + . ID=Phyra87930;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2875000001;logic_name=jgi_phyra1 scaffold_2875 ensembl transcript 1 620 . + . ID=Phyra87930;Parent=Phyra87930;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2875 . exon 1 377 . + . ID=Phyra87930.1;Parent=Phyra87930;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2875 . CDS 3 377 . + 0 ID=Phyra87930;Parent=Phyra87930;rank=1 scaffold_2875 . CDS 402 620 . + 0 ID=Phyra87930;Parent=Phyra87930;rank=2 scaffold_2875 . exon 402 620 . + . ID=Phyra87930.2;Parent=Phyra87930;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2871 1 2048 ##gff-version 3 ##sequence-region scaffold_2872 1 2048 scaffold_2872 . repeat_region 216 927 . + . description=GypsyPi-1c_I-int scaffold_2872 . repeat_region 1222 1500 . + . description=GypsyPi-1c_I-int scaffold_2872 . biological_region 1564 1565 0.999 - . logic_name=eponine scaffold_2872 . repeat_region 1738 1752 . ? . description=dust scaffold_2872 ensembl pseudogene 603 847 . + . ID=Phyra46444;biotype=pseudogene;external_name=gwEuk.2872.1.1;logic_name=jgi_phyra1 scaffold_2872 ensembl pseudogene 603 847 . + . ID=Phyra46444;Parent=Phyra46444;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_2872 . exon 603 847 . + . ID=Phyra46444.1;Parent=Phyra46444;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2869 1 2051 scaffold_2869 . repeat_region 755 774 . ? . description=trf scaffold_2869 . biological_region 1271 1272 0.999 - . logic_name=eponine scaffold_2869 ensembl protein_coding_gene 15 1366 . - . ID=Phyra87927;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2869000001;logic_name=jgi_phyra1 scaffold_2869 ensembl transcript 15 1366 . - . ID=Phyra87927;Parent=Phyra87927;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2869 . CDS 15 708 . - 0 ID=Phyra87927;Parent=Phyra87927;rank=2 scaffold_2869 . exon 15 708 . - . ID=Phyra87927.2;Parent=Phyra87927;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2869 . CDS 961 1366 . - 0 ID=Phyra87927;Parent=Phyra87927;rank=1 scaffold_2869 . exon 961 1366 . - . ID=Phyra87927.1;Parent=Phyra87927;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2870 1 2051 ##gff-version 3 ##sequence-region scaffold_2867 1 2052 scaffold_2867 . repeat_region 950 1087 . ? . description=trf scaffold_2867 . repeat_region 951 1130 . + . description=(CGA)n scaffold_2867 . biological_region 988 993 0.999 + . logic_name=eponine scaffold_2867 . repeat_region 1027 1100 . ? . description=trf scaffold_2867 . biological_region 1028 1032 0.999 + . logic_name=eponine scaffold_2867 . repeat_region 1042 1154 . ? . description=trf scaffold_2867 . repeat_region 1057 1149 . ? . description=dust scaffold_2867 . repeat_region 1057 1222 . ? . description=trf scaffold_2867 . repeat_region 1071 1142 . ? . description=trf scaffold_2867 . biological_region 1136 1138 0.999 + . logic_name=eponine scaffold_2867 . biological_region 1150 1154 0.999 - . logic_name=eponine scaffold_2867 . repeat_region 1215 1244 . ? . description=trf scaffold_2867 ensembl protein_coding_gene 1 1583 . + . ID=Phyra87926;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2867000001;logic_name=jgi_phyra1 scaffold_2867 ensembl transcript 1 1583 . + . ID=Phyra87926;Parent=Phyra87926;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2867 . exon 1 309 . + . ID=Phyra87926.1;Parent=Phyra87926;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_2867 . CDS 3 309 . + 0 ID=Phyra87926;Parent=Phyra87926;rank=1 scaffold_2867 . CDS 371 1398 . + 0 ID=Phyra87926;Parent=Phyra87926;rank=2 scaffold_2867 . exon 371 1398 . + . ID=Phyra87926.2;Parent=Phyra87926;constitutive=1;ensembl_phase=1;rank=2 scaffold_2867 . CDS 1458 1583 . + 0 ID=Phyra87926;Parent=Phyra87926;rank=3 scaffold_2867 . exon 1458 1583 . + . ID=Phyra87926.3;Parent=Phyra87926;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_2868 1 2053 scaffold_2868 . biological_region 1587 1590 0.999 + . logic_name=eponine scaffold_2868 . biological_region 1624 1629 0.999 - . logic_name=eponine scaffold_2868 . biological_region 1678 1684 0.999 + . logic_name=eponine scaffold_2868 . biological_region 1727 1729 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2865 1 2055 ##gff-version 3 ##sequence-region scaffold_2866 1 2056 ##gff-version 3 ##sequence-region scaffold_2864 1 2061 scaffold_2864 . repeat_region 113 1127 . - . description=GypsyPi-1c_I-int scaffold_2864 . biological_region 1607 1608 0.999 - . logic_name=eponine scaffold_2864 . biological_region 1659 1664 0.999 - . logic_name=eponine scaffold_2864 . biological_region 1698 1700 0.999 + . logic_name=eponine scaffold_2864 . biological_region 1761 1766 0.999 - . logic_name=eponine scaffold_2864 . biological_region 1813 1818 0.999 - . logic_name=eponine scaffold_2864 ensembl protein_coding_gene 129 1772 . - . ID=Phyra87925;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2864000001;logic_name=jgi_phyra1 scaffold_2864 ensembl transcript 129 1772 . - . ID=Phyra87925;Parent=Phyra87925;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2864 . CDS 129 1772 . - 0 ID=Phyra87925;Parent=Phyra87925;rank=1 scaffold_2864 . exon 129 1772 . - . ID=Phyra87925.1;Parent=Phyra87925;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2863 1 2062 ##gff-version 3 ##sequence-region scaffold_2862 1 2068 scaffold_2862 . repeat_region 1 1499 . - . description=LSU-rRNA_Hca scaffold_2862 . repeat_region 1648 1655 . ? . description=dust scaffold_2862 ensembl protein_coding_gene 1752 1952 . + . ID=Phyra46431;biotype=protein_coding;external_name=gwEuk.2862.1.1;logic_name=jgi_phyra1 scaffold_2862 ensembl transcript 1752 1952 . + . ID=Phyra46431;Parent=Phyra46431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2862 . CDS 1752 1952 . + 0 ID=Phyra46431;Parent=Phyra46431;rank=1 scaffold_2862 . exon 1752 1952 . + . ID=Phyra46431.1;Parent=Phyra46431;constitutive=1;rank=1 scaffold_2862 ensembl protein_coding_gene 306 626 . + . ID=Phyra46433;biotype=protein_coding;external_name=gwEuk.2862.3.1;logic_name=jgi_phyra1 scaffold_2862 ensembl transcript 306 626 . + . ID=Phyra46433;Parent=Phyra46433;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2862 . CDS 306 424 . + 0 ID=Phyra46433;Parent=Phyra46433;rank=1 scaffold_2862 . exon 306 424 . + . ID=Phyra46433.1;Parent=Phyra46433;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2862 . CDS 527 626 . + 0 ID=Phyra46433;Parent=Phyra46433;rank=2 scaffold_2862 . exon 527 626 . + . ID=Phyra46433.2;Parent=Phyra46433;constitutive=1;ensembl_phase=2;rank=2 scaffold_2862 ensembl pseudogene 5 278 . - . ID=Phyra46436;biotype=pseudogene;external_name=gwEuk.2862.6.1;logic_name=jgi_phyra1 scaffold_2862 ensembl pseudogene 5 278 . - . ID=Phyra46436;Parent=Phyra46436;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_2862 . exon 5 278 . - . ID=Phyra46436.1;Parent=Phyra46436;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2862 ensembl protein_coding_gene 711 872 . + . ID=Phyra46437;biotype=protein_coding;external_name=gwEuk.2862.7.1;logic_name=jgi_phyra1 scaffold_2862 ensembl transcript 711 872 . + . ID=Phyra46437;Parent=Phyra46437;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2862 . CDS 711 872 . + 0 ID=Phyra46437;Parent=Phyra46437;rank=1 scaffold_2862 . exon 711 872 . + . ID=Phyra46437.1;Parent=Phyra46437;constitutive=1;rank=1 scaffold_2862 ensembl protein_coding_gene 1015 1386 . + . ID=Phyra46438;biotype=protein_coding;external_name=gwEuk.2862.8.1;logic_name=jgi_phyra1 scaffold_2862 ensembl transcript 1015 1386 . + . ID=Phyra46438;Parent=Phyra46438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2862 . CDS 1015 1386 . + 0 ID=Phyra46438;Parent=Phyra46438;rank=1 scaffold_2862 . exon 1015 1386 . + . ID=Phyra46438.1;Parent=Phyra46438;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2861 1 2073 scaffold_2861 . biological_region 313 316 0.999 + . logic_name=eponine scaffold_2861 ensembl protein_coding_gene 232 890 . + . ID=Phyra87923;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2861000001;logic_name=jgi_phyra1 scaffold_2861 ensembl transcript 232 890 . + . ID=Phyra87923;Parent=Phyra87923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2861 . CDS 232 406 . + 0 ID=Phyra87923;Parent=Phyra87923;rank=1 scaffold_2861 . exon 232 406 . + . ID=Phyra87923.1;Parent=Phyra87923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2861 . CDS 489 514 . + 0 ID=Phyra87923;Parent=Phyra87923;rank=2 scaffold_2861 . exon 489 514 . + . ID=Phyra87923.2;Parent=Phyra87923;constitutive=1;ensembl_phase=1;rank=2 scaffold_2861 . CDS 678 890 . + 0 ID=Phyra87923;Parent=Phyra87923;rank=3 scaffold_2861 . exon 678 890 . + . ID=Phyra87923.3;Parent=Phyra87923;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_2859 1 2075 scaffold_2859 . repeat_region 19 269 . + . description=GypsyPi-1c_I-int scaffold_2859 . repeat_region 1518 1602 . ? . description=trf scaffold_2859 . repeat_region 1790 2022 . - . description=GypsyPi-1c_I-int scaffold_2859 ensembl protein_coding_gene 295 888 . - . ID=Phyra87922;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2859000001;logic_name=jgi_phyra1 scaffold_2859 ensembl transcript 295 888 . - . ID=Phyra87922;Parent=Phyra87922;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2859 . CDS 295 888 . - 0 ID=Phyra87922;Parent=Phyra87922;rank=1 scaffold_2859 . exon 295 888 . - . ID=Phyra87922.1;Parent=Phyra87922;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2857 1 2076 scaffold_2857 . repeat_region 224 231 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2860 1 2076 ##gff-version 3 ##sequence-region scaffold_2858 1 2077 scaffold_2858 . biological_region 102 104 0.999 + . logic_name=eponine scaffold_2858 . repeat_region 216 246 . ? . description=trf scaffold_2858 . repeat_region 988 1029 . ? . description=trf scaffold_2858 . biological_region 1756 1757 0.999 + . logic_name=eponine scaffold_2858 ensembl protein_coding_gene 1123 2004 . - . ID=Phyra72557;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2858000001;logic_name=jgi_phyra1 scaffold_2858 ensembl transcript 1123 2004 . - . ID=Phyra72557;Parent=Phyra72557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2858 . CDS 1123 2004 . - 0 ID=Phyra72557;Parent=Phyra72557;rank=1 scaffold_2858 . exon 1123 2004 . - . ID=Phyra72557.1;Parent=Phyra72557;constitutive=1;rank=1 scaffold_2858 ensembl protein_coding_gene 90 702 . - . ID=Phyra87920;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2858000001;logic_name=jgi_phyra1 scaffold_2858 ensembl transcript 90 702 . - . ID=Phyra87920;Parent=Phyra87920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2858 . CDS 90 702 . - 0 ID=Phyra87920;Parent=Phyra87920;rank=1 scaffold_2858 . exon 90 702 . - . ID=Phyra87920.1;Parent=Phyra87920;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2856 1 2078 ##gff-version 3 ##sequence-region scaffold_2855 1 2081 scaffold_2855 . repeat_region 1601 1643 . ? . description=trf scaffold_2855 . repeat_region 1742 1788 . ? . description=trf scaffold_2855 ensembl protein_coding_gene 48 1550 . + . ID=Phyra87919;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2855000001;logic_name=jgi_phyra1 scaffold_2855 ensembl transcript 48 1550 . + . ID=Phyra87919;Parent=Phyra87919;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2855 . CDS 48 1550 . + 0 ID=Phyra87919;Parent=Phyra87919;rank=1 scaffold_2855 . exon 48 1550 . + . ID=Phyra87919.1;Parent=Phyra87919;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2854 1 2085 scaffold_2854 . repeat_region 1164 1206 . ? . description=trf scaffold_2854 ensembl protein_coding_gene 441 1055 . + . ID=Phyra46422;biotype=protein_coding;external_name=gwEuk.2854.3.1;logic_name=jgi_phyra1 scaffold_2854 ensembl transcript 441 1055 . + . ID=Phyra46422;Parent=Phyra46422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2854 . CDS 441 1055 . + 0 ID=Phyra46422;Parent=Phyra46422;rank=1 scaffold_2854 . exon 441 1055 . + . ID=Phyra46422.1;Parent=Phyra46422;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2853 1 2099 scaffold_2853 . biological_region 1639 1639 0.999 - . logic_name=eponine scaffold_2853 ensembl protein_coding_gene 12 2096 . - . ID=Phyra87917;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2853000001;logic_name=jgi_phyra1 scaffold_2853 ensembl transcript 12 2096 . - . ID=Phyra87917;Parent=Phyra87917;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2853 . CDS 12 2096 . - 0 ID=Phyra87917;Parent=Phyra87917;rank=1 scaffold_2853 . exon 12 2096 . - . ID=Phyra87917.1;Parent=Phyra87917;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2852 1 2101 scaffold_2852 . repeat_region 227 287 . ? . description=dust scaffold_2852 . repeat_region 988 1159 . + . description=(CTCA)n scaffold_2852 . repeat_region 993 1134 . ? . description=trf scaffold_2852 . repeat_region 993 1152 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2851 1 2111 scaffold_2851 ensembl protein_coding_gene 55 828 . + . ID=Phyra87916;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2851000001;logic_name=jgi_phyra1 scaffold_2851 ensembl transcript 55 828 . + . ID=Phyra87916;Parent=Phyra87916;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2851 . CDS 55 828 . + 0 ID=Phyra87916;Parent=Phyra87916;rank=1 scaffold_2851 . exon 55 828 . + . ID=Phyra87916.1;Parent=Phyra87916;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2850 1 2118 scaffold_2850 . biological_region 559 563 0.999 + . logic_name=eponine scaffold_2850 . repeat_region 626 704 . ? . description=trf scaffold_2850 . biological_region 676 680 0.999 - . logic_name=eponine scaffold_2850 . biological_region 1054 1059 0.999 - . logic_name=eponine scaffold_2850 ensembl protein_coding_gene 108 1283 . + . ID=Phyra87915;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2850000001;logic_name=jgi_phyra1 scaffold_2850 ensembl transcript 108 1283 . + . ID=Phyra87915;Parent=Phyra87915;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2850 . CDS 108 672 . + 0 ID=Phyra87915;Parent=Phyra87915;rank=1 scaffold_2850 . exon 108 672 . + . ID=Phyra87915.1;Parent=Phyra87915;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2850 . CDS 754 1283 . + 0 ID=Phyra87915;Parent=Phyra87915;rank=2 scaffold_2850 . exon 754 1283 . + . ID=Phyra87915.2;Parent=Phyra87915;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2849 1 2121 scaffold_2849 . repeat_region 1728 1775 . ? . description=dust scaffold_2849 . repeat_region 1731 1758 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2848 1 2123 scaffold_2848 . biological_region 1268 1271 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2847 1 2132 scaffold_2847 . biological_region 112 113 0.999 - . logic_name=eponine scaffold_2847 . biological_region 1917 1918 0.999 - . logic_name=eponine scaffold_2847 ensembl protein_coding_gene 419 2017 . + . ID=Phyra87914;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2847000001;logic_name=jgi_phyra1 scaffold_2847 ensembl transcript 419 2017 . + . ID=Phyra87914;Parent=Phyra87914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2847 . CDS 419 2017 . + 0 ID=Phyra87914;Parent=Phyra87914;rank=1 scaffold_2847 . exon 419 2017 . + . ID=Phyra87914.1;Parent=Phyra87914;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2846 1 2138 scaffold_2846 . repeat_region 828 836 . ? . description=dust scaffold_2846 . biological_region 1095 1098 0.999 - . logic_name=eponine scaffold_2846 . biological_region 1125 1130 0.999 - . logic_name=eponine scaffold_2846 . biological_region 1147 1152 0.999 - . logic_name=eponine scaffold_2846 . repeat_region 1260 1464 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2845 1 2145 scaffold_2845 ensembl protein_coding_gene 1188 2140 . + . ID=Phyra87913;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2845000001;logic_name=jgi_phyra1 scaffold_2845 ensembl transcript 1188 2140 . + . ID=Phyra87913;Parent=Phyra87913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2845 . CDS 1188 2140 . + 0 ID=Phyra87913;Parent=Phyra87913;rank=1 scaffold_2845 . exon 1188 2140 . + . ID=Phyra87913.1;Parent=Phyra87913;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2843 1 2146 ##gff-version 3 ##sequence-region scaffold_2844 1 2146 scaffold_2844 . biological_region 716 717 0.999 + . logic_name=eponine scaffold_2844 ensembl protein_coding_gene 960 2131 . + . ID=Phyra87912;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2844000001;logic_name=jgi_phyra1 scaffold_2844 ensembl transcript 960 2131 . + . ID=Phyra87912;Parent=Phyra87912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2844 . CDS 960 1051 . + 0 ID=Phyra87912;Parent=Phyra87912;rank=1 scaffold_2844 . exon 960 1051 . + . ID=Phyra87912.1;Parent=Phyra87912;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2844 . CDS 1110 1132 . + 0 ID=Phyra87912;Parent=Phyra87912;rank=2 scaffold_2844 . exon 1110 1132 . + . ID=Phyra87912.2;Parent=Phyra87912;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2844 . CDS 1339 1477 . + 0 ID=Phyra87912;Parent=Phyra87912;rank=3 scaffold_2844 . exon 1339 1477 . + . ID=Phyra87912.3;Parent=Phyra87912;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_2844 . CDS 1545 2131 . + 0 ID=Phyra87912;Parent=Phyra87912;rank=4 scaffold_2844 . exon 1545 2131 . + . ID=Phyra87912.4;Parent=Phyra87912;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_2842 1 2148 scaffold_2842 ensembl protein_coding_gene 1584 2127 . - . ID=Phyra87911;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2842000001;logic_name=jgi_phyra1 scaffold_2842 ensembl transcript 1584 2127 . - . ID=Phyra87911;Parent=Phyra87911;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2842 . CDS 1584 1634 . - 0 ID=Phyra87911;Parent=Phyra87911;rank=2 scaffold_2842 . exon 1584 1634 . - . ID=Phyra87911.2;Parent=Phyra87911;constitutive=1;rank=2 scaffold_2842 . CDS 1726 2127 . - 0 ID=Phyra87911;Parent=Phyra87911;rank=1 scaffold_2842 . exon 1726 2127 . - . ID=Phyra87911.1;Parent=Phyra87911;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2841 1 2151 scaffold_2841 . repeat_region 752 794 . ? . description=trf scaffold_2841 . repeat_region 1711 1753 . ? . description=trf scaffold_2841 ensembl protein_coding_gene 4 520 . - . ID=Phyra87909;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2841000001;logic_name=jgi_phyra1 scaffold_2841 ensembl transcript 4 520 . - . ID=Phyra87909;Parent=Phyra87909;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2841 . CDS 4 520 . - 0 ID=Phyra87909;Parent=Phyra87909;rank=1 scaffold_2841 . exon 4 520 . - . ID=Phyra87909.1;Parent=Phyra87909;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2841 ensembl protein_coding_gene 1080 1667 . + . ID=Phyra87910;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2841000002;logic_name=jgi_phyra1 scaffold_2841 ensembl transcript 1080 1667 . + . ID=Phyra87910;Parent=Phyra87910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2841 . CDS 1080 1667 . + 0 ID=Phyra87910;Parent=Phyra87910;rank=1 scaffold_2841 . exon 1080 1667 . + . ID=Phyra87910.1;Parent=Phyra87910;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2840 1 2153 scaffold_2840 . repeat_region 125 403 . + . description=GypsyPi-1c_I-int scaffold_2840 . repeat_region 654 666 . ? . description=dust scaffold_2840 . biological_region 1322 1326 0.999 + . logic_name=eponine scaffold_2840 . biological_region 1505 1511 0.999 + . logic_name=eponine scaffold_2840 ensembl protein_coding_gene 235 1684 . - . ID=Phyra87908;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2840000001;logic_name=jgi_phyra1 scaffold_2840 ensembl transcript 235 1684 . - . ID=Phyra87908;Parent=Phyra87908;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2840 . CDS 235 241 . - 0 ID=Phyra87908;Parent=Phyra87908;rank=5 scaffold_2840 . exon 235 241 . - . ID=Phyra87908.5;Parent=Phyra87908;constitutive=1;ensembl_phase=2;rank=5 scaffold_2840 . CDS 351 391 . - 0 ID=Phyra87908;Parent=Phyra87908;rank=4 scaffold_2840 . exon 351 391 . - . ID=Phyra87908.4;Parent=Phyra87908;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2840 . CDS 438 617 . - 0 ID=Phyra87908;Parent=Phyra87908;rank=3 scaffold_2840 . exon 438 617 . - . ID=Phyra87908.3;Parent=Phyra87908;constitutive=1;rank=3 scaffold_2840 . CDS 845 1008 . - 0 ID=Phyra87908;Parent=Phyra87908;rank=2 scaffold_2840 . exon 845 1008 . - . ID=Phyra87908.2;Parent=Phyra87908;constitutive=1;ensembl_phase=1;rank=2 scaffold_2840 . CDS 1033 1684 . - 0 ID=Phyra87908;Parent=Phyra87908;rank=1 scaffold_2840 . exon 1033 1684 . - . ID=Phyra87908.1;Parent=Phyra87908;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2839 1 2161 scaffold_2839 ensembl protein_coding_gene 958 2122 . + . ID=Phyra87907;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2839000001;logic_name=jgi_phyra1 scaffold_2839 ensembl transcript 958 2122 . + . ID=Phyra87907;Parent=Phyra87907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2839 . CDS 958 2122 . + 0 ID=Phyra87907;Parent=Phyra87907;rank=1 scaffold_2839 . exon 958 2122 . + . ID=Phyra87907.1;Parent=Phyra87907;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2837 1 2163 scaffold_2837 . repeat_region 1332 1431 . - . description=Gypsy-1-I_PI-int ##gff-version 3 ##sequence-region scaffold_2838 1 2164 ##gff-version 3 ##sequence-region scaffold_261 1 2169 scaffold_261 . repeat_region 1547 1589 . ? . description=trf scaffold_261 . repeat_region 1688 1734 . ? . description=trf scaffold_261 ensembl pseudogene 5 1421 . + . ID=Phyra45951;biotype=pseudogene;external_name=gwEuk.261.8.1;logic_name=jgi_phyra1 scaffold_261 ensembl pseudogene 5 1421 . + . ID=Phyra45951;Parent=Phyra45951;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_261 . exon 5 1421 . + . ID=Phyra45951.1;Parent=Phyra45951;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2836 1 2169 scaffold_2836 . biological_region 1784 1790 0.999 + . logic_name=eponine scaffold_2836 . biological_region 1854 1855 0.999 - . logic_name=eponine scaffold_2836 . repeat_region 1855 1895 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2835 1 2174 scaffold_2835 ensembl protein_coding_gene 319 2096 . - . ID=Phyra87906;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2835000001;logic_name=jgi_phyra1 scaffold_2835 ensembl transcript 319 2096 . - . ID=Phyra87906;Parent=Phyra87906;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2835 . CDS 319 330 . - 0 ID=Phyra87906;Parent=Phyra87906;rank=2 scaffold_2835 . exon 319 330 . - . ID=Phyra87906.2;Parent=Phyra87906;constitutive=1;rank=2 scaffold_2835 . CDS 396 2096 . - 0 ID=Phyra87906;Parent=Phyra87906;rank=1 scaffold_2835 . exon 396 2096 . - . ID=Phyra87906.1;Parent=Phyra87906;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2834 1 2177 scaffold_2834 . repeat_region 1 2177 . ? . description=trf scaffold_2834 ensembl protein_coding_gene 6 2071 . - . ID=Phyra87905;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2834000001;logic_name=jgi_phyra1 scaffold_2834 ensembl transcript 6 2071 . - . ID=Phyra87905;Parent=Phyra87905;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2834 . CDS 6 399 . - 0 ID=Phyra87905;Parent=Phyra87905;rank=4 scaffold_2834 . exon 6 399 . - . ID=Phyra87905.4;Parent=Phyra87905;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_2834 . CDS 452 707 . - 0 ID=Phyra87905;Parent=Phyra87905;rank=3 scaffold_2834 . exon 452 707 . - . ID=Phyra87905.3;Parent=Phyra87905;constitutive=1;ensembl_phase=2;rank=3 scaffold_2834 . CDS 862 1439 . - 0 ID=Phyra87905;Parent=Phyra87905;rank=2 scaffold_2834 . exon 862 1439 . - . ID=Phyra87905.2;Parent=Phyra87905;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2834 . CDS 1471 2070 . - 0 ID=Phyra87905;Parent=Phyra87905;rank=1 scaffold_2834 . exon 1471 2071 . - . ID=Phyra87905.1;Parent=Phyra87905;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2833 1 2182 scaffold_2833 ensembl protein_coding_gene 667 1578 . + . ID=Phyra87904;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2833000001;logic_name=jgi_phyra1 scaffold_2833 ensembl transcript 667 1578 . + . ID=Phyra87904;Parent=Phyra87904;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2833 . CDS 667 1578 . + 0 ID=Phyra87904;Parent=Phyra87904;rank=1 scaffold_2833 . exon 667 1578 . + . ID=Phyra87904.1;Parent=Phyra87904;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2832 1 2185 scaffold_2832 . biological_region 1897 1903 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2831 1 2187 scaffold_2831 . repeat_region 878 885 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2829 1 2190 scaffold_2829 . repeat_region 1953 2040 . ? . description=dust scaffold_2829 . repeat_region 1964 2010 . ? . description=trf scaffold_2829 ensembl protein_coding_gene 461 1105 . - . ID=Phyra87903;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2829000001;logic_name=jgi_phyra1 scaffold_2829 ensembl transcript 461 1105 . - . ID=Phyra87903;Parent=Phyra87903;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2829 . CDS 461 1105 . - 0 ID=Phyra87903;Parent=Phyra87903;rank=1 scaffold_2829 . exon 461 1105 . - . ID=Phyra87903.1;Parent=Phyra87903;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2830 1 2190 scaffold_2830 . repeat_region 1 544 . + . description=GypsyPi-1c_I-int scaffold_2830 . biological_region 210 215 0.999 + . logic_name=eponine scaffold_2830 . repeat_region 573 1520 . + . description=GypsyPi-1c_I-int scaffold_2830 . biological_region 1325 1327 0.999 - . logic_name=eponine scaffold_2830 . biological_region 1712 1712 0.999 - . logic_name=eponine scaffold_2830 . repeat_region 1783 1976 . + . description=GypsyPi-1c_I-int scaffold_2830 . repeat_region 2137 2190 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_2828 1 2192 scaffold_2828 . repeat_region 357 404 . ? . description=dust scaffold_2828 . repeat_region 360 387 . ? . description=trf scaffold_2828 . biological_region 2032 2037 0.999 + . logic_name=eponine scaffold_2828 . biological_region 2078 2080 0.999 + . logic_name=eponine scaffold_2828 ensembl protein_coding_gene 387 2174 . + . ID=Phyra87902;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2828000001;logic_name=jgi_phyra1 scaffold_2828 ensembl transcript 387 2174 . + . ID=Phyra87902;Parent=Phyra87902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2828 . CDS 387 1250 . + 0 ID=Phyra87902;Parent=Phyra87902;rank=1 scaffold_2828 . exon 387 1250 . + . ID=Phyra87902.1;Parent=Phyra87902;constitutive=1;rank=1 scaffold_2828 . CDS 1440 2174 . + 0 ID=Phyra87902;Parent=Phyra87902;rank=2 scaffold_2828 . exon 1440 2174 . + . ID=Phyra87902.2;Parent=Phyra87902;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2824 1 2193 scaffold_2824 . repeat_region 77 134 . ? . description=trf scaffold_2824 . repeat_region 758 790 . ? . description=trf scaffold_2824 ensembl protein_coding_gene 31 2070 . - . ID=Phyra87898;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2824000001;logic_name=jgi_phyra1 scaffold_2824 ensembl transcript 31 2070 . - . ID=Phyra87898;Parent=Phyra87898;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2824 . CDS 31 2070 . - 0 ID=Phyra87898;Parent=Phyra87898;rank=1 scaffold_2824 . exon 31 2070 . - . ID=Phyra87898.1;Parent=Phyra87898;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2825 1 2194 scaffold_2825 . biological_region 307 310 0.999 - . logic_name=eponine scaffold_2825 . biological_region 331 331 0.999 + . logic_name=eponine scaffold_2825 . biological_region 376 379 0.999 - . logic_name=eponine scaffold_2825 ensembl protein_coding_gene 96 496 . - . ID=Phyra87899;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2825000001;logic_name=jgi_phyra1 scaffold_2825 ensembl transcript 96 496 . - . ID=Phyra87899;Parent=Phyra87899;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2825 . CDS 96 496 . - 0 ID=Phyra87899;Parent=Phyra87899;rank=1 scaffold_2825 . exon 96 496 . - . ID=Phyra87899.1;Parent=Phyra87899;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2825 ensembl protein_coding_gene 1787 2125 . - . ID=Phyra87900;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2825000002;logic_name=jgi_phyra1 scaffold_2825 ensembl transcript 1787 2125 . - . ID=Phyra87900;Parent=Phyra87900;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2825 . CDS 1787 2125 . - 0 ID=Phyra87900;Parent=Phyra87900;rank=1 scaffold_2825 . exon 1787 2125 . - . ID=Phyra87900.1;Parent=Phyra87900;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2826 1 2194 ##gff-version 3 ##sequence-region scaffold_2827 1 2195 scaffold_2827 . biological_region 1829 1832 0.999 + . logic_name=eponine scaffold_2827 . repeat_region 1884 1917 . ? . description=trf scaffold_2827 . biological_region 2013 2013 0.999 - . logic_name=eponine scaffold_2827 ensembl protein_coding_gene 1250 2047 . - . ID=Phyra87901;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2827000001;logic_name=jgi_phyra1 scaffold_2827 ensembl transcript 1250 2047 . - . ID=Phyra87901;Parent=Phyra87901;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2827 . CDS 1250 1351 . - 0 ID=Phyra87901;Parent=Phyra87901;rank=3 scaffold_2827 . exon 1250 1351 . - . ID=Phyra87901.3;Parent=Phyra87901;constitutive=1;rank=3 scaffold_2827 . CDS 1542 1826 . - 0 ID=Phyra87901;Parent=Phyra87901;rank=2 scaffold_2827 . exon 1542 1826 . - . ID=Phyra87901.2;Parent=Phyra87901;constitutive=1;rank=2 scaffold_2827 . CDS 1871 2047 . - 0 ID=Phyra87901;Parent=Phyra87901;rank=1 scaffold_2827 . exon 1871 2047 . - . ID=Phyra87901.1;Parent=Phyra87901;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2823 1 2198 scaffold_2823 . repeat_region 751 782 . ? . description=trf scaffold_2823 . biological_region 1913 1917 0.999 + . logic_name=eponine scaffold_2823 ensembl protein_coding_gene 463 2190 . - . ID=Phyra46396;biotype=protein_coding;external_name=gwEuk.2823.3.1;logic_name=jgi_phyra1 scaffold_2823 ensembl transcript 463 2190 . - . ID=Phyra46396;Parent=Phyra46396;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2823 . CDS 463 2190 . - 0 ID=Phyra46396;Parent=Phyra46396;rank=1 scaffold_2823 . exon 463 2190 . - . ID=Phyra46396.1;Parent=Phyra46396;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2822 1 2200 scaffold_2822 ensembl protein_coding_gene 976 2152 . - . ID=Phyra87896;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2822000001;logic_name=jgi_phyra1 scaffold_2822 ensembl transcript 976 2152 . - . ID=Phyra87896;Parent=Phyra87896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2822 . CDS 976 2151 . - 0 ID=Phyra87896;Parent=Phyra87896;rank=1 scaffold_2822 . exon 976 2152 . - . ID=Phyra87896.1;Parent=Phyra87896;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2821 1 2203 scaffold_2821 . repeat_region 1526 1569 . ? . description=trf scaffold_2821 ensembl protein_coding_gene 105 482 . - . ID=Phyra87895;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2821000001;logic_name=jgi_phyra1 scaffold_2821 ensembl transcript 105 482 . - . ID=Phyra87895;Parent=Phyra87895;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2821 . CDS 105 482 . - 0 ID=Phyra87895;Parent=Phyra87895;rank=1 scaffold_2821 . exon 105 482 . - . ID=Phyra87895.1;Parent=Phyra87895;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2820 1 2205 scaffold_2820 . repeat_region 1352 1381 . ? . description=trf scaffold_2820 . biological_region 2127 2131 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2818 1 2210 scaffold_2818 . biological_region 1874 1878 0.999 + . logic_name=eponine scaffold_2818 ensembl protein_coding_gene 406 744 . + . ID=Phyra87893;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2818000001;logic_name=jgi_phyra1 scaffold_2818 ensembl transcript 406 744 . + . ID=Phyra87893;Parent=Phyra87893;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2818 . CDS 406 744 . + 0 ID=Phyra87893;Parent=Phyra87893;rank=1 scaffold_2818 . exon 406 744 . + . ID=Phyra87893.1;Parent=Phyra87893;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2819 1 2212 scaffold_2819 ensembl protein_coding_gene 1658 2058 . - . ID=Phyra87894;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2819000001;logic_name=jgi_phyra1 scaffold_2819 ensembl transcript 1658 2058 . - . ID=Phyra87894;Parent=Phyra87894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2819 . CDS 1658 1704 . - 0 ID=Phyra87894;Parent=Phyra87894;rank=2 scaffold_2819 . exon 1658 1704 . - . ID=Phyra87894.2;Parent=Phyra87894;constitutive=1;ensembl_phase=1;rank=2 scaffold_2819 . CDS 1785 2058 . - 0 ID=Phyra87894;Parent=Phyra87894;rank=1 scaffold_2819 . exon 1785 2058 . - . ID=Phyra87894.1;Parent=Phyra87894;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2816 1 2216 scaffold_2816 . repeat_region 1 200 . - . description=GypsyPi-1c_I-int scaffold_2816 . repeat_region 244 659 . - . description=GypsyPi-1c_I-int scaffold_2816 . biological_region 1191 1195 0.999 - . logic_name=eponine scaffold_2816 . biological_region 1294 1297 0.999 - . logic_name=eponine scaffold_2816 . biological_region 1346 1349 0.999 - . logic_name=eponine scaffold_2816 . repeat_region 1691 1789 . - . description=GypsyPi-1c_I-int scaffold_2816 ensembl protein_coding_gene 117 2146 . - . ID=Phyra87891;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2816000001;logic_name=jgi_phyra1 scaffold_2816 ensembl transcript 117 2146 . - . ID=Phyra87891;Parent=Phyra87891;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2816 . CDS 117 1925 . - 0 ID=Phyra87891;Parent=Phyra87891;rank=2 scaffold_2816 . exon 117 1925 . - . ID=Phyra87891.2;Parent=Phyra87891;constitutive=1;rank=2 scaffold_2816 . CDS 2001 2144 . - 0 ID=Phyra87891;Parent=Phyra87891;rank=1 scaffold_2816 . exon 2001 2146 . - . ID=Phyra87891.1;Parent=Phyra87891;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2817 1 2216 scaffold_2817 . repeat_region 590 597 . ? . description=dust scaffold_2817 . biological_region 1601 1605 0.999 - . logic_name=eponine scaffold_2817 . biological_region 1622 1625 0.999 - . logic_name=eponine scaffold_2817 ensembl protein_coding_gene 1404 2099 . - . ID=Phyra87892;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2817000001;logic_name=jgi_phyra1 scaffold_2817 ensembl transcript 1404 2099 . - . ID=Phyra87892;Parent=Phyra87892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2817 . CDS 1404 2099 . - 0 ID=Phyra87892;Parent=Phyra87892;rank=1 scaffold_2817 . exon 1404 2099 . - . ID=Phyra87892.1;Parent=Phyra87892;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1451 1 2218 ##gff-version 3 ##sequence-region scaffold_2815 1 2218 ##gff-version 3 ##sequence-region scaffold_2814 1 2227 scaffold_2814 . repeat_region 322 404 . + . description=Polinton-1_PI scaffold_2814 . repeat_region 1592 1638 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2813 1 2232 scaffold_2813 . biological_region 521 523 0.999 + . logic_name=eponine scaffold_2813 . biological_region 1039 1040 0.999 + . logic_name=eponine scaffold_2813 ensembl protein_coding_gene 89 1396 . + . ID=Phyra87890;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2813000001;logic_name=jgi_phyra1 scaffold_2813 ensembl transcript 89 1396 . + . ID=Phyra87890;Parent=Phyra87890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2813 . CDS 89 1396 . + 0 ID=Phyra87890;Parent=Phyra87890;rank=1 scaffold_2813 . exon 89 1396 . + . ID=Phyra87890.1;Parent=Phyra87890;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2811 1 2234 scaffold_2811 . biological_region 1603 1603 0.999 + . logic_name=eponine scaffold_2811 . biological_region 1636 1638 0.999 + . logic_name=eponine scaffold_2811 . biological_region 1666 1668 0.999 - . logic_name=eponine scaffold_2811 . biological_region 1850 1852 0.999 - . logic_name=eponine scaffold_2811 ensembl protein_coding_gene 533 1876 . - . ID=Phyra87888;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2811000001;logic_name=jgi_phyra1 scaffold_2811 ensembl transcript 533 1876 . - . ID=Phyra87888;Parent=Phyra87888;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2811 . CDS 533 596 . - 0 ID=Phyra87888;Parent=Phyra87888;rank=5 scaffold_2811 . exon 533 596 . - . ID=Phyra87888.5;Parent=Phyra87888;constitutive=1;ensembl_phase=2;rank=5 scaffold_2811 . CDS 670 776 . - 0 ID=Phyra87888;Parent=Phyra87888;rank=4 scaffold_2811 . exon 670 776 . - . ID=Phyra87888.4;Parent=Phyra87888;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2811 . CDS 849 961 . - 0 ID=Phyra87888;Parent=Phyra87888;rank=3 scaffold_2811 . exon 849 961 . - . ID=Phyra87888.3;Parent=Phyra87888;constitutive=1;ensembl_phase=1;rank=3 scaffold_2811 . CDS 1026 1448 . - 0 ID=Phyra87888;Parent=Phyra87888;rank=2 scaffold_2811 . exon 1026 1448 . - . ID=Phyra87888.2;Parent=Phyra87888;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2811 . CDS 1522 1876 . - 0 ID=Phyra87888;Parent=Phyra87888;rank=1 scaffold_2811 . exon 1522 1876 . - . ID=Phyra87888.1;Parent=Phyra87888;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2812 1 2234 scaffold_2812 ensembl protein_coding_gene 4 2234 . - . ID=Phyra87889;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2812000001;logic_name=jgi_phyra1 scaffold_2812 ensembl transcript 4 2234 . - . ID=Phyra87889;Parent=Phyra87889;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2812 . CDS 4 779 . - 0 ID=Phyra87889;Parent=Phyra87889;rank=2 scaffold_2812 . exon 4 779 . - . ID=Phyra87889.2;Parent=Phyra87889;constitutive=1;ensembl_phase=1;rank=2 scaffold_2812 . CDS 999 2232 . - 0 ID=Phyra87889;Parent=Phyra87889;rank=1 scaffold_2812 . exon 999 2234 . - . ID=Phyra87889.1;Parent=Phyra87889;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2810 1 2240 scaffold_2810 . repeat_region 990 1090 . ? . description=trf scaffold_2810 . repeat_region 1008 1097 . ? . description=trf scaffold_2810 . repeat_region 1107 1127 . ? . description=trf scaffold_2810 . repeat_region 1107 1127 . ? . description=dust scaffold_2810 . repeat_region 1739 1822 . ? . description=trf scaffold_2810 . repeat_region 1739 1822 . ? . description=trf scaffold_2810 . repeat_region 1839 1859 . ? . description=trf scaffold_2810 . repeat_region 1839 1859 . ? . description=dust scaffold_2810 ensembl protein_coding_gene 308 2205 . + . ID=Phyra87887;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2810000001;logic_name=jgi_phyra1 scaffold_2810 ensembl transcript 308 2205 . + . ID=Phyra87887;Parent=Phyra87887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2810 . CDS 308 502 . + 0 ID=Phyra87887;Parent=Phyra87887;rank=1 scaffold_2810 . exon 308 502 . + . ID=Phyra87887.1;Parent=Phyra87887;constitutive=1;rank=1 scaffold_2810 . CDS 549 2205 . + 0 ID=Phyra87887;Parent=Phyra87887;rank=2 scaffold_2810 . exon 549 2205 . + . ID=Phyra87887.2;Parent=Phyra87887;constitutive=1;ensembl_end_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2809 1 2248 scaffold_2809 . biological_region 581 585 0.999 + . logic_name=eponine scaffold_2809 . biological_region 617 617 0.999 + . logic_name=eponine scaffold_2809 . biological_region 633 636 0.999 + . logic_name=eponine scaffold_2809 . repeat_region 1278 2119 . + . description=GypsyPi-1c_I-int scaffold_2809 . biological_region 1388 1388 0.999 - . logic_name=eponine scaffold_2809 . biological_region 1443 1445 0.999 + . logic_name=eponine scaffold_2809 ensembl protein_coding_gene 187 2231 . + . ID=Phyra87886;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2809000001;logic_name=jgi_phyra1 scaffold_2809 ensembl transcript 187 2231 . + . ID=Phyra87886;Parent=Phyra87886;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2809 . CDS 187 322 . + 0 ID=Phyra87886;Parent=Phyra87886;rank=1 scaffold_2809 . exon 187 322 . + . ID=Phyra87886.1;Parent=Phyra87886;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2809 . CDS 543 1075 . + 0 ID=Phyra87886;Parent=Phyra87886;rank=2 scaffold_2809 . exon 543 1075 . + . ID=Phyra87886.2;Parent=Phyra87886;constitutive=1;ensembl_phase=1;rank=2 scaffold_2809 . CDS 1101 2231 . + 0 ID=Phyra87886;Parent=Phyra87886;rank=3 scaffold_2809 . exon 1101 2231 . + . ID=Phyra87886.3;Parent=Phyra87886;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_2808 1 2249 scaffold_2808 . biological_region 452 456 0.999 - . logic_name=eponine scaffold_2808 . repeat_region 1477 1484 . ? . description=dust scaffold_2808 ensembl protein_coding_gene 38 529 . + . ID=Phyra87883;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2808000001;logic_name=jgi_phyra1 scaffold_2808 ensembl transcript 38 529 . + . ID=Phyra87883;Parent=Phyra87883;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2808 . CDS 38 529 . + 0 ID=Phyra87883;Parent=Phyra87883;rank=1 scaffold_2808 . exon 38 529 . + . ID=Phyra87883.1;Parent=Phyra87883;constitutive=1;rank=1 scaffold_2808 ensembl protein_coding_gene 674 1381 . - . ID=Phyra87884;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2808000002;logic_name=jgi_phyra1 scaffold_2808 ensembl transcript 674 1381 . - . ID=Phyra87884;Parent=Phyra87884;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2808 . CDS 674 813 . - 0 ID=Phyra87884;Parent=Phyra87884;rank=4 scaffold_2808 . exon 674 813 . - . ID=Phyra87884.4;Parent=Phyra87884;constitutive=1;ensembl_phase=1;rank=4 scaffold_2808 . CDS 867 956 . - 0 ID=Phyra87884;Parent=Phyra87884;rank=3 scaffold_2808 . exon 867 956 . - . ID=Phyra87884.3;Parent=Phyra87884;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2808 . CDS 1016 1077 . - 0 ID=Phyra87884;Parent=Phyra87884;rank=2 scaffold_2808 . exon 1016 1077 . - . ID=Phyra87884.2;Parent=Phyra87884;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2808 . CDS 1143 1381 . - 0 ID=Phyra87884;Parent=Phyra87884;rank=1 scaffold_2808 . exon 1143 1381 . - . ID=Phyra87884.1;Parent=Phyra87884;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2808 ensembl protein_coding_gene 1509 2223 . + . ID=Phyra87885;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2808000003;logic_name=jgi_phyra1 scaffold_2808 ensembl transcript 1509 2223 . + . ID=Phyra87885;Parent=Phyra87885;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2808 . CDS 1509 1653 . + 0 ID=Phyra87885;Parent=Phyra87885;rank=1 scaffold_2808 . exon 1509 1653 . + . ID=Phyra87885.1;Parent=Phyra87885;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2808 . CDS 1724 1859 . + 0 ID=Phyra87885;Parent=Phyra87885;rank=2 scaffold_2808 . exon 1724 1859 . + . ID=Phyra87885.2;Parent=Phyra87885;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2808 . CDS 1916 2080 . + 0 ID=Phyra87885;Parent=Phyra87885;rank=3 scaffold_2808 . exon 1916 2080 . + . ID=Phyra87885.3;Parent=Phyra87885;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_2808 . CDS 2158 2223 . + 0 ID=Phyra87885;Parent=Phyra87885;rank=4 scaffold_2808 . exon 2158 2223 . + . ID=Phyra87885.4;Parent=Phyra87885;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_2806 1 2250 scaffold_2806 . biological_region 519 520 0.999 - . logic_name=eponine scaffold_2806 ensembl protein_coding_gene 107 580 . + . ID=Phyra87882;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2806000001;logic_name=jgi_phyra1 scaffold_2806 ensembl transcript 107 580 . + . ID=Phyra87882;Parent=Phyra87882;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2806 . CDS 107 580 . + 0 ID=Phyra87882;Parent=Phyra87882;rank=1 scaffold_2806 . exon 107 580 . + . ID=Phyra87882.1;Parent=Phyra87882;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2807 1 2250 ##gff-version 3 ##sequence-region scaffold_2805 1 2253 scaffold_2805 . repeat_region 1163 1528 . - . description=GypsyPi-1c_I-int scaffold_2805 ensembl protein_coding_gene 183 1273 . - . ID=Phyra87881;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2805000001;logic_name=jgi_phyra1 scaffold_2805 ensembl transcript 183 1273 . - . ID=Phyra87881;Parent=Phyra87881;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2805 . CDS 183 762 . - 0 ID=Phyra87881;Parent=Phyra87881;rank=3 scaffold_2805 . exon 183 762 . - . ID=Phyra87881.3;Parent=Phyra87881;constitutive=1;ensembl_phase=2;rank=3 scaffold_2805 . CDS 889 954 . - 0 ID=Phyra87881;Parent=Phyra87881;rank=2 scaffold_2805 . exon 889 954 . - . ID=Phyra87881.2;Parent=Phyra87881;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2805 . CDS 1047 1273 . - 0 ID=Phyra87881;Parent=Phyra87881;rank=1 scaffold_2805 . exon 1047 1273 . - . ID=Phyra87881.1;Parent=Phyra87881;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2804 1 2256 scaffold_2804 . repeat_region 237 465 . + . description=Sola3-2_PS scaffold_2804 . biological_region 347 350 0.999 + . logic_name=eponine scaffold_2804 . repeat_region 1466 1476 . ? . description=dust scaffold_2804 ensembl protein_coding_gene 43 1107 . + . ID=Phyra87880;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2804000001;logic_name=jgi_phyra1 scaffold_2804 ensembl transcript 43 1107 . + . ID=Phyra87880;Parent=Phyra87880;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2804 . CDS 43 1107 . + 0 ID=Phyra87880;Parent=Phyra87880;rank=1 scaffold_2804 . exon 43 1107 . + . ID=Phyra87880.1;Parent=Phyra87880;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2803 1 2257 ##gff-version 3 ##sequence-region scaffold_2794 1 2258 scaffold_2794 ensembl protein_coding_gene 1613 2251 . - . ID=Phyra87870;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2794000001;logic_name=jgi_phyra1 scaffold_2794 ensembl transcript 1613 2251 . - . ID=Phyra87870;Parent=Phyra87870;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2794 . CDS 1613 2251 . - 0 ID=Phyra87870;Parent=Phyra87870;rank=1 scaffold_2794 . exon 1613 2251 . - . ID=Phyra87870.1;Parent=Phyra87870;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2802 1 2261 scaffold_2802 . repeat_region 872 900 . ? . description=trf scaffold_2802 . repeat_region 912 942 . ? . description=trf scaffold_2802 . repeat_region 912 942 . ? . description=dust scaffold_2802 . repeat_region 912 948 . ? . description=trf scaffold_2802 . biological_region 1339 1341 0.999 + . logic_name=eponine scaffold_2802 . biological_region 1503 1506 0.999 + . logic_name=eponine scaffold_2802 ensembl protein_coding_gene 574 1008 . + . ID=Phyra87878;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2802000001;logic_name=jgi_phyra1 scaffold_2802 ensembl transcript 574 1008 . + . ID=Phyra87878;Parent=Phyra87878;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2802 . CDS 574 1008 . + 0 ID=Phyra87878;Parent=Phyra87878;rank=1 scaffold_2802 . exon 574 1008 . + . ID=Phyra87878.1;Parent=Phyra87878;constitutive=1;rank=1 scaffold_2802 ensembl protein_coding_gene 1364 2188 . + . ID=Phyra87879;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2802000002;logic_name=jgi_phyra1 scaffold_2802 ensembl transcript 1364 2188 . + . ID=Phyra87879;Parent=Phyra87879;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2802 . CDS 1364 2188 . + 0 ID=Phyra87879;Parent=Phyra87879;rank=1 scaffold_2802 . exon 1364 2188 . + . ID=Phyra87879.1;Parent=Phyra87879;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2801 1 2265 scaffold_2801 . biological_region 1394 1399 0.999 + . logic_name=eponine scaffold_2801 . biological_region 1449 1455 0.999 - . logic_name=eponine scaffold_2801 . biological_region 1463 1468 0.999 + . logic_name=eponine scaffold_2801 . biological_region 1470 1472 0.999 - . logic_name=eponine scaffold_2801 . biological_region 1613 1614 0.999 - . logic_name=eponine scaffold_2801 ensembl protein_coding_gene 561 1545 . - . ID=Phyra87877;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2801000001;logic_name=jgi_phyra1 scaffold_2801 ensembl transcript 561 1545 . - . ID=Phyra87877;Parent=Phyra87877;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2801 . CDS 561 575 . - 0 ID=Phyra87877;Parent=Phyra87877;rank=2 scaffold_2801 . exon 561 575 . - . ID=Phyra87877.2;Parent=Phyra87877;constitutive=1;rank=2 scaffold_2801 . CDS 667 1545 . - 0 ID=Phyra87877;Parent=Phyra87877;rank=1 scaffold_2801 . exon 667 1545 . - . ID=Phyra87877.1;Parent=Phyra87877;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2800 1 2267 scaffold_2800 . repeat_region 692 736 . ? . description=trf scaffold_2800 . biological_region 1996 2000 0.999 - . logic_name=eponine scaffold_2800 . repeat_region 2254 2267 . ? . description=dust scaffold_2800 ensembl protein_coding_gene 1488 2085 . + . ID=Phyra87876;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2800000001;logic_name=jgi_phyra1 scaffold_2800 ensembl transcript 1488 2085 . + . ID=Phyra87876;Parent=Phyra87876;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2800 . CDS 1488 1548 . + 0 ID=Phyra87876;Parent=Phyra87876;rank=1 scaffold_2800 . exon 1488 1548 . + . ID=Phyra87876.1;Parent=Phyra87876;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2800 . CDS 1754 2085 . + 0 ID=Phyra87876;Parent=Phyra87876;rank=2 scaffold_2800 . exon 1754 2085 . + . ID=Phyra87876.2;Parent=Phyra87876;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2798 1 2271 scaffold_2798 . biological_region 873 878 0.999 + . logic_name=eponine scaffold_2798 . repeat_region 1197 1204 . ? . description=dust scaffold_2798 . repeat_region 1762 1965 . ? . description=trf scaffold_2798 . biological_region 1957 1959 0.999 - . logic_name=eponine scaffold_2798 ensembl protein_coding_gene 129 1181 . + . ID=Phyra87873;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2798000001;logic_name=jgi_phyra1 scaffold_2798 ensembl transcript 129 1181 . + . ID=Phyra87873;Parent=Phyra87873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2798 . CDS 129 1181 . + 0 ID=Phyra87873;Parent=Phyra87873;rank=1 scaffold_2798 . exon 129 1181 . + . ID=Phyra87873.1;Parent=Phyra87873;constitutive=1;rank=1 scaffold_2798 ensembl protein_coding_gene 1483 2268 . - . ID=Phyra87874;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2798000002;logic_name=jgi_phyra1 scaffold_2798 ensembl transcript 1483 2268 . - . ID=Phyra87874;Parent=Phyra87874;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2798 . CDS 1483 2268 . - 0 ID=Phyra87874;Parent=Phyra87874;rank=1 scaffold_2798 . exon 1483 2268 . - . ID=Phyra87874.1;Parent=Phyra87874;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2797 1 2275 scaffold_2797 . repeat_region 152 195 . ? . description=trf scaffold_2797 . repeat_region 929 980 . ? . description=dust scaffold_2797 . repeat_region 1013 1448 . + . description=GypsyPi-1c_I-int scaffold_2797 . repeat_region 1823 2044 . + . description=GypsyPi-1c_I-int scaffold_2797 . biological_region 2119 2120 0.999 - . logic_name=eponine scaffold_2797 ensembl protein_coding_gene 1145 1390 . + . ID=Phyra46282;biotype=protein_coding;external_name=gwEuk.2797.1.1;logic_name=jgi_phyra1 scaffold_2797 ensembl transcript 1145 1390 . + . ID=Phyra46282;Parent=Phyra46282;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2797 . CDS 1145 1390 . + 0 ID=Phyra46282;Parent=Phyra46282;rank=1 scaffold_2797 . exon 1145 1390 . + . ID=Phyra46282.1;Parent=Phyra46282;constitutive=1;rank=1 scaffold_2797 ensembl protein_coding_gene 55 528 . - . ID=Phyra87872;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2797000001;logic_name=jgi_phyra1 scaffold_2797 ensembl transcript 55 528 . - . ID=Phyra87872;Parent=Phyra87872;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2797 . CDS 55 528 . - 0 ID=Phyra87872;Parent=Phyra87872;rank=1 scaffold_2797 . exon 55 528 . - . ID=Phyra87872.1;Parent=Phyra87872;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2796 1 2279 scaffold_2796 . biological_region 330 331 0.999 - . logic_name=eponine scaffold_2796 ensembl protein_coding_gene 2 544 . + . ID=Phyra46278;biotype=protein_coding;external_name=gwEuk.2796.2.1;logic_name=jgi_phyra1 scaffold_2796 ensembl transcript 2 544 . + . ID=Phyra46278;Parent=Phyra46278;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2796 . CDS 2 544 . + 0 ID=Phyra46278;Parent=Phyra46278;rank=1 scaffold_2796 . exon 2 544 . + . ID=Phyra46278.1;Parent=Phyra46278;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2799 1 2280 scaffold_2799 . repeat_region 63 225 . + . description=Polinton-1_PI scaffold_2799 . repeat_region 381 418 . + . description=Polinton-1_PI scaffold_2799 . repeat_region 1437 1966 . + . description=Polinton-1_PI scaffold_2799 . repeat_region 1708 1715 . ? . description=dust scaffold_2799 ensembl protein_coding_gene 63 556 . + . ID=Phyra87875;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2799000001;logic_name=jgi_phyra1 scaffold_2799 ensembl transcript 63 556 . + . ID=Phyra87875;Parent=Phyra87875;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2799 . CDS 63 188 . + 0 ID=Phyra87875;Parent=Phyra87875;rank=1 scaffold_2799 . exon 63 188 . + . ID=Phyra87875.1;Parent=Phyra87875;constitutive=1;rank=1 scaffold_2799 . CDS 211 414 . + 0 ID=Phyra87875;Parent=Phyra87875;rank=2 scaffold_2799 . exon 211 414 . + . ID=Phyra87875.2;Parent=Phyra87875;constitutive=1;rank=2 scaffold_2799 . CDS 533 556 . + 0 ID=Phyra87875;Parent=Phyra87875;rank=3 scaffold_2799 . exon 533 556 . + . ID=Phyra87875.3;Parent=Phyra87875;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_2795 1 2282 ##gff-version 3 ##sequence-region scaffold_2793 1 2284 scaffold_2793 . biological_region 739 743 0.999 + . logic_name=eponine scaffold_2793 . repeat_region 755 801 . + . description=(CGGA)n scaffold_2793 . repeat_region 758 799 . ? . description=dust scaffold_2793 . repeat_region 765 799 . ? . description=trf scaffold_2793 . repeat_region 971 1545 . ? . description=trf scaffold_2793 ensembl protein_coding_gene 1635 2078 . - . ID=Phyra72556;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2793000001;logic_name=jgi_phyra1 scaffold_2793 ensembl transcript 1635 2078 . - . ID=Phyra72556;Parent=Phyra72556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2793 . CDS 1635 2078 . - 0 ID=Phyra72556;Parent=Phyra72556;rank=1 scaffold_2793 . exon 1635 2078 . - . ID=Phyra72556.1;Parent=Phyra72556;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2792 1 2292 scaffold_2792 . biological_region 378 381 0.999 + . logic_name=eponine scaffold_2792 . repeat_region 394 440 . + . description=(CGGA)n scaffold_2792 . repeat_region 397 438 . ? . description=dust scaffold_2792 . repeat_region 404 438 . ? . description=trf scaffold_2792 . repeat_region 642 653 . ? . description=dust scaffold_2792 . repeat_region 2019 2068 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2791 1 2293 scaffold_2791 . biological_region 415 415 0.999 + . logic_name=eponine scaffold_2791 . repeat_region 1070 1113 . ? . description=trf scaffold_2791 . repeat_region 2032 2122 . ? . description=trf scaffold_2791 . repeat_region 2046 2102 . ? . description=trf scaffold_2791 . repeat_region 2049 2104 . ? . description=dust scaffold_2791 . repeat_region 2056 2125 . ? . description=trf scaffold_2791 ensembl protein_coding_gene 859 1368 . - . ID=Phyra87867;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2791000001;logic_name=jgi_phyra1 scaffold_2791 ensembl transcript 859 1368 . - . ID=Phyra87867;Parent=Phyra87867;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2791 . CDS 859 1368 . - 0 ID=Phyra87867;Parent=Phyra87867;rank=1 scaffold_2791 . exon 859 1368 . - . ID=Phyra87867.1;Parent=Phyra87867;constitutive=1;rank=1 scaffold_2791 ensembl protein_coding_gene 1942 2261 . - . ID=Phyra87868;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2791000002;logic_name=jgi_phyra1 scaffold_2791 ensembl transcript 1942 2261 . - . ID=Phyra87868;Parent=Phyra87868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2791 . CDS 1942 2259 . - 0 ID=Phyra87868;Parent=Phyra87868;rank=1 scaffold_2791 . exon 1942 2261 . - . ID=Phyra87868.1;Parent=Phyra87868;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2790 1 2294 scaffold_2790 . repeat_region 1476 1524 . ? . description=trf scaffold_2790 ensembl protein_coding_gene 1 1195 . + . ID=Phyra87866;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2790000001;logic_name=jgi_phyra1 scaffold_2790 ensembl transcript 1 1195 . + . ID=Phyra87866;Parent=Phyra87866;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2790 . CDS 1 531 . + 0 ID=Phyra87866;Parent=Phyra87866;rank=1 scaffold_2790 . exon 1 531 . + . ID=Phyra87866.1;Parent=Phyra87866;constitutive=1;rank=1 scaffold_2790 . CDS 599 715 . + 0 ID=Phyra87866;Parent=Phyra87866;rank=2 scaffold_2790 . exon 599 715 . + . ID=Phyra87866.2;Parent=Phyra87866;constitutive=1;rank=2 scaffold_2790 . CDS 825 968 . + 0 ID=Phyra87866;Parent=Phyra87866;rank=3 scaffold_2790 . exon 825 968 . + . ID=Phyra87866.3;Parent=Phyra87866;constitutive=1;rank=3 scaffold_2790 . CDS 1034 1195 . + 0 ID=Phyra87866;Parent=Phyra87866;rank=4 scaffold_2790 . exon 1034 1195 . + . ID=Phyra87866.4;Parent=Phyra87866;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_2787 1 2298 scaffold_2787 . repeat_region 1063 1307 . - . description=Polinton-1_PI scaffold_2787 . repeat_region 1353 2160 . - . description=Polinton-1_PI scaffold_2787 . repeat_region 1378 1385 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2789 1 2298 scaffold_2789 ensembl protein_coding_gene 268 606 . - . ID=Phyra87865;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2789000001;logic_name=jgi_phyra1 scaffold_2789 ensembl transcript 268 606 . - . ID=Phyra87865;Parent=Phyra87865;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2789 . CDS 268 606 . - 0 ID=Phyra87865;Parent=Phyra87865;rank=1 scaffold_2789 . exon 268 606 . - . ID=Phyra87865.1;Parent=Phyra87865;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2785 1 2302 ##gff-version 3 ##sequence-region scaffold_2786 1 2304 scaffold_2786 . biological_region 1087 1089 0.999 - . logic_name=eponine scaffold_2786 . biological_region 1105 1109 0.999 + . logic_name=eponine scaffold_2786 . biological_region 1109 1111 0.999 - . logic_name=eponine scaffold_2786 . repeat_region 1673 1681 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2783 1 2305 scaffold_2783 ensembl protein_coding_gene 24 2058 . - . ID=Phyra87861;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2783000001;logic_name=jgi_phyra1 scaffold_2783 ensembl transcript 24 2058 . - . ID=Phyra87861;Parent=Phyra87861;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2783 . CDS 24 673 . - 0 ID=Phyra87861;Parent=Phyra87861;rank=6 scaffold_2783 . exon 24 673 . - . ID=Phyra87861.6;Parent=Phyra87861;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_2783 . CDS 757 1146 . - 0 ID=Phyra87861;Parent=Phyra87861;rank=5 scaffold_2783 . exon 757 1146 . - . ID=Phyra87861.5;Parent=Phyra87861;constitutive=1;rank=5 scaffold_2783 . CDS 1216 1403 . - 0 ID=Phyra87861;Parent=Phyra87861;rank=4 scaffold_2783 . exon 1216 1403 . - . ID=Phyra87861.4;Parent=Phyra87861;constitutive=1;ensembl_phase=1;rank=4 scaffold_2783 . CDS 1507 1629 . - 0 ID=Phyra87861;Parent=Phyra87861;rank=3 scaffold_2783 . exon 1507 1629 . - . ID=Phyra87861.3;Parent=Phyra87861;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2783 . CDS 1708 1967 . - 0 ID=Phyra87861;Parent=Phyra87861;rank=2 scaffold_2783 . exon 1708 1967 . - . ID=Phyra87861.2;Parent=Phyra87861;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2783 . CDS 2045 2058 . - 0 ID=Phyra87861;Parent=Phyra87861;rank=1 scaffold_2783 . exon 2045 2058 . - . ID=Phyra87861.1;Parent=Phyra87861;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2784 1 2307 scaffold_2784 . repeat_region 705 728 . ? . description=trf scaffold_2784 . biological_region 2279 2285 0.999 - . logic_name=eponine scaffold_2784 ensembl protein_coding_gene 678 2304 . - . ID=Phyra87862;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2784000001;logic_name=jgi_phyra1 scaffold_2784 ensembl transcript 678 2304 . - . ID=Phyra87862;Parent=Phyra87862;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2784 . CDS 678 854 . - 0 ID=Phyra87862;Parent=Phyra87862;rank=7 scaffold_2784 . exon 678 854 . - . ID=Phyra87862.7;Parent=Phyra87862;constitutive=1;rank=7 scaffold_2784 . CDS 919 1032 . - 0 ID=Phyra87862;Parent=Phyra87862;rank=6 scaffold_2784 . exon 919 1032 . - . ID=Phyra87862.6;Parent=Phyra87862;constitutive=1;rank=6 scaffold_2784 . CDS 1109 1159 . - 0 ID=Phyra87862;Parent=Phyra87862;rank=5 scaffold_2784 . exon 1109 1159 . - . ID=Phyra87862.5;Parent=Phyra87862;constitutive=1;rank=5 scaffold_2784 . CDS 1248 1310 . - 0 ID=Phyra87862;Parent=Phyra87862;rank=4 scaffold_2784 . exon 1248 1310 . - . ID=Phyra87862.4;Parent=Phyra87862;constitutive=1;rank=4 scaffold_2784 . CDS 1386 1589 . - 0 ID=Phyra87862;Parent=Phyra87862;rank=3 scaffold_2784 . exon 1386 1589 . - . ID=Phyra87862.3;Parent=Phyra87862;constitutive=1;rank=3 scaffold_2784 . CDS 1707 1752 . - 0 ID=Phyra87862;Parent=Phyra87862;rank=2 scaffold_2784 . exon 1707 1752 . - . ID=Phyra87862.2;Parent=Phyra87862;constitutive=1;ensembl_phase=2;rank=2 scaffold_2784 . CDS 2171 2304 . - 0 ID=Phyra87862;Parent=Phyra87862;rank=1 scaffold_2784 . exon 2171 2304 . - . ID=Phyra87862.1;Parent=Phyra87862;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2788 1 2316 scaffold_2788 . repeat_region 611 652 . ? . description=trf scaffold_2788 . biological_region 1859 1861 0.999 - . logic_name=eponine scaffold_2788 ensembl protein_coding_gene 281 713 . - . ID=Phyra46268;biotype=protein_coding;external_name=gwEuk.2788.4.1;logic_name=jgi_phyra1 scaffold_2788 ensembl transcript 281 713 . - . ID=Phyra46268;Parent=Phyra46268;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2788 . CDS 281 587 . - 0 ID=Phyra46268;Parent=Phyra46268;rank=2 scaffold_2788 . exon 281 587 . - . ID=Phyra46268.2;Parent=Phyra46268;constitutive=1;ensembl_phase=2;rank=2 scaffold_2788 . CDS 676 713 . - 0 ID=Phyra46268;Parent=Phyra46268;rank=1 scaffold_2788 . exon 676 713 . - . ID=Phyra46268.1;Parent=Phyra46268;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2788 ensembl protein_coding_gene 1035 2249 . - . ID=Phyra87864;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2788000002;logic_name=jgi_phyra1 scaffold_2788 ensembl transcript 1035 2249 . - . ID=Phyra87864;Parent=Phyra87864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2788 . CDS 1035 2249 . - 0 ID=Phyra87864;Parent=Phyra87864;rank=1 scaffold_2788 . exon 1035 2249 . - . ID=Phyra87864.1;Parent=Phyra87864;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2781 1 2325 scaffold_2781 . repeat_region 91 103 . ? . description=dust scaffold_2781 . repeat_region 1916 1941 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2782 1 2328 scaffold_2782 . repeat_region 302 356 . ? . description=trf scaffold_2782 ensembl protein_coding_gene 90 1000 . + . ID=Phyra87859;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2782000001;logic_name=jgi_phyra1 scaffold_2782 ensembl transcript 90 1000 . + . ID=Phyra87859;Parent=Phyra87859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2782 . exon 90 1000 . + . ID=Phyra87859.1;Parent=Phyra87859;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2782 . CDS 92 1000 . + 0 ID=Phyra87859;Parent=Phyra87859;rank=1 scaffold_2782 ensembl protein_coding_gene 1333 2325 . - . ID=Phyra87860;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2782000002;logic_name=jgi_phyra1 scaffold_2782 ensembl transcript 1333 2325 . - . ID=Phyra87860;Parent=Phyra87860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2782 . CDS 1333 2325 . - 0 ID=Phyra87860;Parent=Phyra87860;rank=1 scaffold_2782 . exon 1333 2325 . - . ID=Phyra87860.1;Parent=Phyra87860;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2778 1 2330 scaffold_2778 . repeat_region 772 816 . ? . description=dust scaffold_2778 . repeat_region 786 813 . ? . description=trf scaffold_2778 . repeat_region 786 816 . ? . description=trf scaffold_2778 . repeat_region 1340 1373 . ? . description=dust scaffold_2778 ensembl protein_coding_gene 23 1297 . + . ID=Phyra87856;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2778000001;logic_name=jgi_phyra1 scaffold_2778 ensembl transcript 23 1297 . + . ID=Phyra87856;Parent=Phyra87856;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2778 . CDS 23 1297 . + 0 ID=Phyra87856;Parent=Phyra87856;rank=1 scaffold_2778 . exon 23 1297 . + . ID=Phyra87856.1;Parent=Phyra87856;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2780 1 2332 scaffold_2780 . repeat_region 2 52 . ? . description=trf scaffold_2780 . repeat_region 7 28 . ? . description=trf scaffold_2780 . repeat_region 204 232 . ? . description=trf scaffold_2780 . repeat_region 336 373 . ? . description=trf scaffold_2780 . repeat_region 472 535 . ? . description=trf scaffold_2780 . repeat_region 473 538 . ? . description=trf scaffold_2780 . repeat_region 479 508 . ? . description=trf scaffold_2780 . repeat_region 481 534 . ? . description=dust scaffold_2780 . repeat_region 484 514 . ? . description=trf scaffold_2780 . biological_region 1757 1760 0.999 - . logic_name=eponine scaffold_2780 ensembl protein_coding_gene 1 2322 . + . ID=Phyra87858;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2780000001;logic_name=jgi_phyra1 scaffold_2780 ensembl transcript 1 2322 . + . ID=Phyra87858;Parent=Phyra87858;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2780 . exon 1 2322 . + . ID=Phyra87858.1;Parent=Phyra87858;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2780 . CDS 2 2322 . + 0 ID=Phyra87858;Parent=Phyra87858;rank=1 ##gff-version 3 ##sequence-region scaffold_2779 1 2336 scaffold_2779 . repeat_region 61 102 . ? . description=trf scaffold_2779 . biological_region 1609 1614 0.999 - . logic_name=eponine scaffold_2779 . repeat_region 1991 2036 . ? . description=trf scaffold_2779 . biological_region 2018 2019 0.999 + . logic_name=eponine scaffold_2779 . biological_region 2076 2078 0.999 - . logic_name=eponine scaffold_2779 ensembl protein_coding_gene 526 1726 . - . ID=Phyra87857;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2779000001;logic_name=jgi_phyra1 scaffold_2779 ensembl transcript 526 1726 . - . ID=Phyra87857;Parent=Phyra87857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2779 . CDS 526 648 . - 0 ID=Phyra87857;Parent=Phyra87857;rank=7 scaffold_2779 . exon 526 648 . - . ID=Phyra87857.7;Parent=Phyra87857;constitutive=1;rank=7 scaffold_2779 . CDS 729 843 . - 0 ID=Phyra87857;Parent=Phyra87857;rank=6 scaffold_2779 . exon 729 843 . - . ID=Phyra87857.6;Parent=Phyra87857;constitutive=1;ensembl_phase=2;rank=6 scaffold_2779 . CDS 907 977 . - 0 ID=Phyra87857;Parent=Phyra87857;rank=5 scaffold_2779 . exon 907 977 . - . ID=Phyra87857.5;Parent=Phyra87857;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_2779 . CDS 1042 1131 . - 0 ID=Phyra87857;Parent=Phyra87857;rank=4 scaffold_2779 . exon 1042 1131 . - . ID=Phyra87857.4;Parent=Phyra87857;constitutive=1;rank=4 scaffold_2779 . CDS 1206 1325 . - 0 ID=Phyra87857;Parent=Phyra87857;rank=3 scaffold_2779 . exon 1206 1325 . - . ID=Phyra87857.3;Parent=Phyra87857;constitutive=1;rank=3 scaffold_2779 . CDS 1392 1469 . - 0 ID=Phyra87857;Parent=Phyra87857;rank=2 scaffold_2779 . exon 1392 1469 . - . ID=Phyra87857.2;Parent=Phyra87857;constitutive=1;rank=2 scaffold_2779 . CDS 1517 1726 . - 0 ID=Phyra87857;Parent=Phyra87857;rank=1 scaffold_2779 . exon 1517 1726 . - . ID=Phyra87857.1;Parent=Phyra87857;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2773 1 2350 ##gff-version 3 ##sequence-region scaffold_2777 1 2355 scaffold_2777 . repeat_region 860 906 . ? . description=trf scaffold_2777 . biological_region 1738 1742 0.999 + . logic_name=eponine scaffold_2777 ensembl protein_coding_gene 9 413 . - . ID=Phyra87854;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2777000001;logic_name=jgi_phyra1 scaffold_2777 ensembl transcript 9 413 . - . ID=Phyra87854;Parent=Phyra87854;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2777 . CDS 9 413 . - 0 ID=Phyra87854;Parent=Phyra87854;rank=1 scaffold_2777 . exon 9 413 . - . ID=Phyra87854.1;Parent=Phyra87854;constitutive=1;rank=1 scaffold_2777 ensembl protein_coding_gene 993 2337 . + . ID=Phyra87855;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2777000002;logic_name=jgi_phyra1 scaffold_2777 ensembl transcript 993 2337 . + . ID=Phyra87855;Parent=Phyra87855;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2777 . CDS 993 2337 . + 0 ID=Phyra87855;Parent=Phyra87855;rank=1 scaffold_2777 . exon 993 2337 . + . ID=Phyra87855.1;Parent=Phyra87855;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2776 1 2356 scaffold_2776 . repeat_region 344 353 . ? . description=dust scaffold_2776 ensembl protein_coding_gene 1014 2108 . + . ID=Phyra87853;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2776000001;logic_name=jgi_phyra1 scaffold_2776 ensembl transcript 1014 2108 . + . ID=Phyra87853;Parent=Phyra87853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2776 . CDS 1014 2108 . + 0 ID=Phyra87853;Parent=Phyra87853;rank=1 scaffold_2776 . exon 1014 2108 . + . ID=Phyra87853.1;Parent=Phyra87853;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2775 1 2357 scaffold_2775 . biological_region 2193 2195 0.999 - . logic_name=eponine scaffold_2775 ensembl protein_coding_gene 1717 2354 . + . ID=Phyra87852;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2775000001;logic_name=jgi_phyra1 scaffold_2775 ensembl transcript 1717 2354 . + . ID=Phyra87852;Parent=Phyra87852;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2775 . CDS 1717 2354 . + 0 ID=Phyra87852;Parent=Phyra87852;rank=1 scaffold_2775 . exon 1717 2354 . + . ID=Phyra87852.1;Parent=Phyra87852;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2769 1 2360 scaffold_2769 . repeat_region 7 24 . ? . description=dust scaffold_2769 . biological_region 583 586 0.999 + . logic_name=eponine scaffold_2769 . biological_region 636 637 0.999 + . logic_name=eponine scaffold_2769 . biological_region 942 944 0.999 + . logic_name=eponine scaffold_2769 . repeat_region 1006 1034 . ? . description=trf scaffold_2769 . repeat_region 1911 1962 . ? . description=trf scaffold_2769 . biological_region 2140 2140 0.999 + . logic_name=eponine scaffold_2769 ensembl protein_coding_gene 274 951 . + . ID=Phyra46251;biotype=protein_coding;external_name=gwEuk.2769.5.1;logic_name=jgi_phyra1 scaffold_2769 ensembl transcript 274 951 . + . ID=Phyra46251;Parent=Phyra46251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2769 . CDS 274 951 . + 0 ID=Phyra46251;Parent=Phyra46251;rank=1 scaffold_2769 . exon 274 951 . + . ID=Phyra46251.1;Parent=Phyra46251;constitutive=1;rank=1 scaffold_2769 ensembl protein_coding_gene 1851 2327 . - . ID=Phyra87848;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2769000002;logic_name=jgi_phyra1 scaffold_2769 ensembl transcript 1851 2327 . - . ID=Phyra87848;Parent=Phyra87848;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2769 . CDS 1851 2327 . - 0 ID=Phyra87848;Parent=Phyra87848;rank=1 scaffold_2769 . exon 1851 2327 . - . ID=Phyra87848.1;Parent=Phyra87848;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2771 1 2361 scaffold_2771 . biological_region 1069 1071 0.999 + . logic_name=eponine scaffold_2771 . biological_region 1690 1695 0.999 + . logic_name=eponine scaffold_2771 ensembl protein_coding_gene 1 766 . + . ID=Phyra87849;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2771000001;logic_name=jgi_phyra1 scaffold_2771 ensembl transcript 1 766 . + . ID=Phyra87849;Parent=Phyra87849;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2771 . CDS 1 529 . + 0 ID=Phyra87849;Parent=Phyra87849;rank=1 scaffold_2771 . exon 1 529 . + . ID=Phyra87849.1;Parent=Phyra87849;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2771 . CDS 555 766 . + 0 ID=Phyra87849;Parent=Phyra87849;rank=2 scaffold_2771 . exon 555 766 . + . ID=Phyra87849.2;Parent=Phyra87849;constitutive=1;ensembl_phase=1;rank=2 scaffold_2771 ensembl protein_coding_gene 962 1498 . - . ID=Phyra87850;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2771000002;logic_name=jgi_phyra1 scaffold_2771 ensembl transcript 962 1498 . - . ID=Phyra87850;Parent=Phyra87850;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2771 . CDS 962 1498 . - 0 ID=Phyra87850;Parent=Phyra87850;rank=1 scaffold_2771 . exon 962 1498 . - . ID=Phyra87850.1;Parent=Phyra87850;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2774 1 2363 ##gff-version 3 ##sequence-region scaffold_2770 1 2364 scaffold_2770 . biological_region 1319 1322 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2772 1 2366 scaffold_2772 . biological_region 393 393 0.999 - . logic_name=eponine scaffold_2772 ensembl protein_coding_gene 5 1303 . - . ID=Phyra87851;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2772000001;logic_name=jgi_phyra1 scaffold_2772 ensembl transcript 5 1303 . - . ID=Phyra87851;Parent=Phyra87851;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2772 . CDS 5 1303 . - 0 ID=Phyra87851;Parent=Phyra87851;rank=1 scaffold_2772 . exon 5 1303 . - . ID=Phyra87851.1;Parent=Phyra87851;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2768 1 2382 scaffold_2768 . biological_region 2184 2189 0.999 - . logic_name=eponine scaffold_2768 . biological_region 2279 2279 0.999 + . logic_name=eponine scaffold_2768 ensembl tRNA_gene 571 643 . + . ID=EPrPRAG00000000006;biotype=tRNA;description=tRNA-Lys for anticodon UUU [Source:TRNASCAN_SE%3BAcc:tRNA-Lys];external_name=tRNA-Lys;logic_name=ncrna_eg scaffold_2768 ensembl transcript 571 643 . + . ID=EPrPRAT00000000006;Parent=EPrPRAG00000000006;biotype=tRNA;logic_name=ncrna_eg scaffold_2768 . exon 571 643 . + . ID=EPrPRAE00000000006;Parent=EPrPRAT00000000006;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2768 ensembl protein_coding_gene 1709 2359 . + . ID=Phyra87846;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2768000001;logic_name=jgi_phyra1 scaffold_2768 ensembl transcript 1709 2359 . + . ID=Phyra87846;Parent=Phyra87846;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2768 . CDS 1709 2359 . + 0 ID=Phyra87846;Parent=Phyra87846;rank=1 scaffold_2768 . exon 1709 2359 . + . ID=Phyra87846.1;Parent=Phyra87846;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2767 1 2387 ##gff-version 3 ##sequence-region scaffold_2766 1 2394 scaffold_2766 . biological_region 491 495 0.999 + . logic_name=eponine scaffold_2766 . biological_region 692 692 0.999 - . logic_name=eponine scaffold_2766 ensembl protein_coding_gene 5 2394 . - . ID=Phyra87845;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2766000001;logic_name=jgi_phyra1 scaffold_2766 ensembl transcript 5 2394 . - . ID=Phyra87845;Parent=Phyra87845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2766 . CDS 5 2394 . - 0 ID=Phyra87845;Parent=Phyra87845;rank=1 scaffold_2766 . exon 5 2394 . - . ID=Phyra87845.1;Parent=Phyra87845;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2764 1 2398 scaffold_2764 . repeat_region 1111 1155 . ? . description=trf scaffold_2764 . biological_region 1245 1246 0.999 - . logic_name=eponine scaffold_2764 . biological_region 1267 1272 0.999 - . logic_name=eponine scaffold_2764 . biological_region 2344 2345 0.999 - . logic_name=eponine scaffold_2764 ensembl protein_coding_gene 2 2358 . + . ID=Phyra87844;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2764000001;logic_name=jgi_phyra1 scaffold_2764 ensembl transcript 2 2358 . + . ID=Phyra87844;Parent=Phyra87844;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2764 . CDS 2 654 . + 0 ID=Phyra87844;Parent=Phyra87844;rank=1 scaffold_2764 . exon 2 654 . + . ID=Phyra87844.1;Parent=Phyra87844;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2764 . CDS 691 799 . + 0 ID=Phyra87844;Parent=Phyra87844;rank=2 scaffold_2764 . exon 691 799 . + . ID=Phyra87844.2;Parent=Phyra87844;constitutive=1;ensembl_phase=2;rank=2 scaffold_2764 . CDS 839 2358 . + 0 ID=Phyra87844;Parent=Phyra87844;rank=3 scaffold_2764 . exon 839 2358 . + . ID=Phyra87844.3;Parent=Phyra87844;constitutive=1;ensembl_end_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_2765 1 2398 ##gff-version 3 ##sequence-region scaffold_2763 1 2407 scaffold_2763 ensembl protein_coding_gene 1 2299 . + . ID=Phyra87843;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2763000001;logic_name=jgi_phyra1 scaffold_2763 ensembl transcript 1 2299 . + . ID=Phyra87843;Parent=Phyra87843;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2763 . exon 1 110 . + . ID=Phyra87843.1;Parent=Phyra87843;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2763 . CDS 3 110 . + 0 ID=Phyra87843;Parent=Phyra87843;rank=1 scaffold_2763 . CDS 161 209 . + 0 ID=Phyra87843;Parent=Phyra87843;rank=2 scaffold_2763 . exon 161 209 . + . ID=Phyra87843.2;Parent=Phyra87843;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2763 . CDS 284 362 . + 0 ID=Phyra87843;Parent=Phyra87843;rank=3 scaffold_2763 . exon 284 362 . + . ID=Phyra87843.3;Parent=Phyra87843;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_2763 . CDS 461 2299 . + 0 ID=Phyra87843;Parent=Phyra87843;rank=4 scaffold_2763 . exon 461 2299 . + . ID=Phyra87843.4;Parent=Phyra87843;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_2761 1 2415 scaffold_2761 . biological_region 672 676 0.999 - . logic_name=eponine scaffold_2761 . biological_region 1056 1063 0.999 + . logic_name=eponine scaffold_2761 . repeat_region 1301 1324 . ? . description=trf scaffold_2761 . repeat_region 1301 1324 . ? . description=dust scaffold_2761 ensembl protein_coding_gene 98 1128 . - . ID=Phyra87841;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2761000001;logic_name=jgi_phyra1 scaffold_2761 ensembl transcript 98 1128 . - . ID=Phyra87841;Parent=Phyra87841;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2761 . CDS 98 565 . - 0 ID=Phyra87841;Parent=Phyra87841;rank=4 scaffold_2761 . exon 98 565 . - . ID=Phyra87841.4;Parent=Phyra87841;constitutive=1;rank=4 scaffold_2761 . CDS 642 749 . - 0 ID=Phyra87841;Parent=Phyra87841;rank=3 scaffold_2761 . exon 642 749 . - . ID=Phyra87841.3;Parent=Phyra87841;constitutive=1;rank=3 scaffold_2761 . CDS 833 970 . - 0 ID=Phyra87841;Parent=Phyra87841;rank=2 scaffold_2761 . exon 833 970 . - . ID=Phyra87841.2;Parent=Phyra87841;constitutive=1;rank=2 scaffold_2761 . CDS 1009 1128 . - 0 ID=Phyra87841;Parent=Phyra87841;rank=1 scaffold_2761 . exon 1009 1128 . - . ID=Phyra87841.1;Parent=Phyra87841;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2762 1 2418 scaffold_2762 ensembl pseudogene 325 959 . + . ID=Phyra46230;biotype=pseudogene;external_name=gwEuk.2762.2.1;logic_name=jgi_phyra1 scaffold_2762 ensembl pseudogene 325 959 . + . ID=Phyra46230;Parent=Phyra46230;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_2762 . exon 325 959 . + . ID=Phyra46230.1;Parent=Phyra46230;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2760 1 2421 scaffold_2760 ensembl protein_coding_gene 432 1872 . - . ID=Phyra87840;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2760000001;logic_name=jgi_phyra1 scaffold_2760 ensembl transcript 432 1872 . - . ID=Phyra87840;Parent=Phyra87840;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2760 . CDS 432 860 . - 0 ID=Phyra87840;Parent=Phyra87840;rank=2 scaffold_2760 . exon 432 860 . - . ID=Phyra87840.2;Parent=Phyra87840;constitutive=1;rank=2 scaffold_2760 . CDS 1354 1872 . - 0 ID=Phyra87840;Parent=Phyra87840;rank=1 scaffold_2760 . exon 1354 1872 . - . ID=Phyra87840.1;Parent=Phyra87840;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2759 1 2429 scaffold_2759 . repeat_region 14 53 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2758 1 2433 scaffold_2758 . biological_region 1662 1664 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2757 1 2439 scaffold_2757 ensembl protein_coding_gene 4 2367 . - . ID=Phyra87839;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2757000001;logic_name=jgi_phyra1 scaffold_2757 ensembl transcript 4 2367 . - . ID=Phyra87839;Parent=Phyra87839;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2757 . CDS 4 377 . - 0 ID=Phyra87839;Parent=Phyra87839;rank=5 scaffold_2757 . exon 4 377 . - . ID=Phyra87839.5;Parent=Phyra87839;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_2757 . CDS 434 730 . - 0 ID=Phyra87839;Parent=Phyra87839;rank=4 scaffold_2757 . exon 434 730 . - . ID=Phyra87839.4;Parent=Phyra87839;constitutive=1;rank=4 scaffold_2757 . CDS 777 2005 . - 0 ID=Phyra87839;Parent=Phyra87839;rank=3 scaffold_2757 . exon 777 2005 . - . ID=Phyra87839.3;Parent=Phyra87839;constitutive=1;ensembl_phase=1;rank=3 scaffold_2757 . CDS 2079 2137 . - 0 ID=Phyra87839;Parent=Phyra87839;rank=2 scaffold_2757 . exon 2079 2137 . - . ID=Phyra87839.2;Parent=Phyra87839;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2757 . CDS 2210 2367 . - 0 ID=Phyra87839;Parent=Phyra87839;rank=1 scaffold_2757 . exon 2210 2367 . - . ID=Phyra87839.1;Parent=Phyra87839;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2756 1 2443 ##gff-version 3 ##sequence-region scaffold_2754 1 2445 scaffold_2754 . repeat_region 2207 2230 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2755 1 2446 scaffold_2755 . biological_region 744 747 0.999 - . logic_name=eponine scaffold_2755 . biological_region 1632 1633 0.999 - . logic_name=eponine scaffold_2755 ensembl protein_coding_gene 592 1702 . - . ID=Phyra87838;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2755000001;logic_name=jgi_phyra1 scaffold_2755 ensembl transcript 592 1702 . - . ID=Phyra87838;Parent=Phyra87838;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2755 . CDS 592 1183 . - 0 ID=Phyra87838;Parent=Phyra87838;rank=3 scaffold_2755 . exon 592 1183 . - . ID=Phyra87838.3;Parent=Phyra87838;constitutive=1;ensembl_phase=2;rank=3 scaffold_2755 . CDS 1240 1582 . - 0 ID=Phyra87838;Parent=Phyra87838;rank=2 scaffold_2755 . exon 1240 1582 . - . ID=Phyra87838.2;Parent=Phyra87838;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2755 . CDS 1684 1702 . - 0 ID=Phyra87838;Parent=Phyra87838;rank=1 scaffold_2755 . exon 1684 1702 . - . ID=Phyra87838.1;Parent=Phyra87838;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2753 1 2451 scaffold_2753 . repeat_region 1 304 . + . description=Polinton-1_PI scaffold_2753 . repeat_region 381 490 . + . description=Polinton-1_PI scaffold_2753 . repeat_region 395 402 . ? . description=dust scaffold_2753 . biological_region 1762 1764 0.999 - . logic_name=eponine scaffold_2753 ensembl protein_coding_gene 1415 2418 . + . ID=Phyra87837;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2753000001;logic_name=jgi_phyra1 scaffold_2753 ensembl transcript 1415 2418 . + . ID=Phyra87837;Parent=Phyra87837;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2753 . CDS 1415 2237 . + 0 ID=Phyra87837;Parent=Phyra87837;rank=1 scaffold_2753 . exon 1415 2237 . + . ID=Phyra87837.1;Parent=Phyra87837;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2753 . CDS 2262 2301 . + 0 ID=Phyra87837;Parent=Phyra87837;rank=2 scaffold_2753 . exon 2262 2301 . + . ID=Phyra87837.2;Parent=Phyra87837;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2753 . CDS 2327 2418 . + 0 ID=Phyra87837;Parent=Phyra87837;rank=3 scaffold_2753 . exon 2327 2418 . + . ID=Phyra87837.3;Parent=Phyra87837;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_2752 1 2453 scaffold_2752 . biological_region 376 378 0.999 + . logic_name=eponine scaffold_2752 . biological_region 422 424 0.999 + . logic_name=eponine scaffold_2752 . repeat_region 437 479 . + . description=(CGGA)n scaffold_2752 . repeat_region 440 477 . ? . description=dust scaffold_2752 . repeat_region 447 477 . ? . description=trf scaffold_2752 . repeat_region 1206 1232 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2751 1 2461 scaffold_2751 ensembl protein_coding_gene 896 1918 . + . ID=Phyra87836;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2751000001;logic_name=jgi_phyra1 scaffold_2751 ensembl transcript 896 1918 . + . ID=Phyra87836;Parent=Phyra87836;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2751 . CDS 896 1918 . + 0 ID=Phyra87836;Parent=Phyra87836;rank=1 scaffold_2751 . exon 896 1918 . + . ID=Phyra87836.1;Parent=Phyra87836;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2749 1 2467 scaffold_2749 . repeat_region 777 793 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2750 1 2467 scaffold_2750 ensembl protein_coding_gene 695 2429 . + . ID=Phyra87835;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2750000001;logic_name=jgi_phyra1 scaffold_2750 ensembl transcript 695 2429 . + . ID=Phyra87835;Parent=Phyra87835;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2750 . CDS 695 2429 . + 0 ID=Phyra87835;Parent=Phyra87835;rank=1 scaffold_2750 . exon 695 2429 . + . ID=Phyra87835.1;Parent=Phyra87835;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_262 1 2469 scaffold_262 . repeat_region 729 771 . ? . description=trf scaffold_262 . repeat_region 870 916 . ? . description=trf scaffold_262 . biological_region 1744 1748 0.999 + . logic_name=eponine scaffold_262 ensembl protein_coding_gene 31 2418 . + . ID=Phyra85597;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_262000001;logic_name=jgi_phyra1 scaffold_262 ensembl transcript 31 2418 . + . ID=Phyra85597;Parent=Phyra85597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_262 . CDS 31 674 . + 0 ID=Phyra85597;Parent=Phyra85597;rank=1 scaffold_262 . exon 31 674 . + . ID=Phyra85597.1;Parent=Phyra85597;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_262 . CDS 1097 2186 . + 0 ID=Phyra85597;Parent=Phyra85597;rank=2 scaffold_262 . exon 1097 2186 . + . ID=Phyra85597.2;Parent=Phyra85597;constitutive=1;ensembl_phase=2;rank=2 scaffold_262 . CDS 2209 2418 . + 0 ID=Phyra85597;Parent=Phyra85597;rank=3 scaffold_262 . exon 2209 2418 . + . ID=Phyra85597.3;Parent=Phyra85597;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_2748 1 2479 scaffold_2748 . repeat_region 4 64 . ? . description=dust scaffold_2748 . biological_region 2123 2123 0.999 - . logic_name=eponine scaffold_2748 . biological_region 2177 2177 0.999 + . logic_name=eponine scaffold_2748 . repeat_region 2447 2471 . ? . description=trf scaffold_2748 ensembl protein_coding_gene 1246 2304 . - . ID=Phyra46219;biotype=protein_coding;external_name=gwEuk.2748.1.1;logic_name=jgi_phyra1 scaffold_2748 ensembl transcript 1246 2304 . - . ID=Phyra46219;Parent=Phyra46219;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2748 . CDS 1246 2304 . - 0 ID=Phyra46219;Parent=Phyra46219;rank=1 scaffold_2748 . exon 1246 2304 . - . ID=Phyra46219.1;Parent=Phyra46219;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2747 1 2480 scaffold_2747 . repeat_region 376 385 . ? . description=dust scaffold_2747 ensembl protein_coding_gene 1026 2120 . + . ID=Phyra87833;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2747000001;logic_name=jgi_phyra1 scaffold_2747 ensembl transcript 1026 2120 . + . ID=Phyra87833;Parent=Phyra87833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2747 . CDS 1026 2120 . + 0 ID=Phyra87833;Parent=Phyra87833;rank=1 scaffold_2747 . exon 1026 2120 . + . ID=Phyra87833.1;Parent=Phyra87833;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2746 1 2486 scaffold_2746 . repeat_region 2030 2040 . ? . description=dust scaffold_2746 . repeat_region 2248 2257 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2745 1 2492 scaffold_2745 ensembl protein_coding_gene 781 2413 . - . ID=Phyra87832;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2745000001;logic_name=jgi_phyra1 scaffold_2745 ensembl transcript 781 2413 . - . ID=Phyra87832;Parent=Phyra87832;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2745 . CDS 781 906 . - 0 ID=Phyra87832;Parent=Phyra87832;rank=3 scaffold_2745 . exon 781 906 . - . ID=Phyra87832.3;Parent=Phyra87832;constitutive=1;rank=3 scaffold_2745 . CDS 929 1584 . - 0 ID=Phyra87832;Parent=Phyra87832;rank=2 scaffold_2745 . exon 929 1584 . - . ID=Phyra87832.2;Parent=Phyra87832;constitutive=1;ensembl_phase=1;rank=2 scaffold_2745 . CDS 1753 2413 . - 0 ID=Phyra87832;Parent=Phyra87832;rank=1 scaffold_2745 . exon 1753 2413 . - . ID=Phyra87832.1;Parent=Phyra87832;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2743 1 2506 ##gff-version 3 ##sequence-region scaffold_2744 1 2506 scaffold_2744 ensembl protein_coding_gene 933 1966 . + . ID=Phyra87831;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2744000001;logic_name=jgi_phyra1 scaffold_2744 ensembl transcript 933 1966 . + . ID=Phyra87831;Parent=Phyra87831;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2744 . CDS 933 1623 . + 0 ID=Phyra87831;Parent=Phyra87831;rank=1 scaffold_2744 . exon 933 1623 . + . ID=Phyra87831.1;Parent=Phyra87831;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2744 . CDS 1686 1966 . + 0 ID=Phyra87831;Parent=Phyra87831;rank=2 scaffold_2744 . exon 1686 1966 . + . ID=Phyra87831.2;Parent=Phyra87831;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2742 1 2509 scaffold_2742 . repeat_region 1 2362 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_2741 1 2534 scaffold_2741 . repeat_region 679 709 . ? . description=trf scaffold_2741 ensembl protein_coding_gene 49 2355 . + . ID=Phyra87830;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2741000001;logic_name=jgi_phyra1 scaffold_2741 ensembl transcript 49 2355 . + . ID=Phyra87830;Parent=Phyra87830;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2741 . CDS 49 2355 . + 0 ID=Phyra87830;Parent=Phyra87830;rank=1 scaffold_2741 . exon 49 2355 . + . ID=Phyra87830.1;Parent=Phyra87830;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2739 1 2536 scaffold_2739 . biological_region 235 242 0.999 + . logic_name=eponine scaffold_2739 ensembl protein_coding_gene 1243 2479 . - . ID=Phyra87829;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2739000001;logic_name=jgi_phyra1 scaffold_2739 ensembl transcript 1243 2479 . - . ID=Phyra87829;Parent=Phyra87829;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2739 . CDS 1243 2478 . - 0 ID=Phyra87829;Parent=Phyra87829;rank=1 scaffold_2739 . exon 1243 2479 . - . ID=Phyra87829.1;Parent=Phyra87829;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2740 1 2537 scaffold_2740 . repeat_region 2329 2338 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2738 1 2554 ##gff-version 3 ##sequence-region scaffold_2737 1 2555 scaffold_2737 . repeat_region 400 408 . ? . description=dust scaffold_2737 ensembl protein_coding_gene 1949 2538 . - . ID=Phyra87828;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2737000001;logic_name=jgi_phyra1 scaffold_2737 ensembl transcript 1949 2538 . - . ID=Phyra87828;Parent=Phyra87828;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2737 . CDS 1949 2371 . - 0 ID=Phyra87828;Parent=Phyra87828;rank=2 scaffold_2737 . exon 1949 2371 . - . ID=Phyra87828.2;Parent=Phyra87828;constitutive=1;rank=2 scaffold_2737 . CDS 2512 2538 . - 0 ID=Phyra87828;Parent=Phyra87828;rank=1 scaffold_2737 . exon 2512 2538 . - . ID=Phyra87828.1;Parent=Phyra87828;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2736 1 2556 scaffold_2736 . repeat_region 1770 2101 . ? . description=trf scaffold_2736 ensembl protein_coding_gene 529 2545 . + . ID=Phyra87827;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2736000001;logic_name=jgi_phyra1 scaffold_2736 ensembl transcript 529 2545 . + . ID=Phyra87827;Parent=Phyra87827;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2736 . CDS 529 1744 . + 0 ID=Phyra87827;Parent=Phyra87827;rank=1 scaffold_2736 . exon 529 1744 . + . ID=Phyra87827.1;Parent=Phyra87827;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2736 . CDS 1767 2545 . + 0 ID=Phyra87827;Parent=Phyra87827;rank=2 scaffold_2736 . exon 1767 2545 . + . ID=Phyra87827.2;Parent=Phyra87827;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2735 1 2566 ##gff-version 3 ##sequence-region scaffold_2734 1 2567 scaffold_2734 . repeat_region 2278 2366 . - . description=GypsyPi-1c_LTR ##gff-version 3 ##sequence-region scaffold_1768 1 2574 scaffold_1768 . repeat_region 235 244 . ? . description=dust scaffold_1768 ensembl protein_coding_gene 760 2174 . - . ID=Phyra87280;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1768000001;logic_name=jgi_phyra1 scaffold_1768 ensembl transcript 760 2174 . - . ID=Phyra87280;Parent=Phyra87280;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1768 . CDS 760 978 . - 0 ID=Phyra87280;Parent=Phyra87280;rank=5 scaffold_1768 . exon 760 978 . - . ID=Phyra87280.5;Parent=Phyra87280;constitutive=1;rank=5 scaffold_1768 . CDS 1041 1151 . - 0 ID=Phyra87280;Parent=Phyra87280;rank=4 scaffold_1768 . exon 1041 1151 . - . ID=Phyra87280.4;Parent=Phyra87280;constitutive=1;rank=4 scaffold_1768 . CDS 1215 1350 . - 0 ID=Phyra87280;Parent=Phyra87280;rank=3 scaffold_1768 . exon 1215 1350 . - . ID=Phyra87280.3;Parent=Phyra87280;constitutive=1;ensembl_phase=2;rank=3 scaffold_1768 . CDS 1455 1582 . - 0 ID=Phyra87280;Parent=Phyra87280;rank=2 scaffold_1768 . exon 1455 1582 . - . ID=Phyra87280.2;Parent=Phyra87280;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1768 . CDS 1809 2174 . - 0 ID=Phyra87280;Parent=Phyra87280;rank=1 scaffold_1768 . exon 1809 2174 . - . ID=Phyra87280.1;Parent=Phyra87280;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2733 1 2583 scaffold_2733 . biological_region 313 314 0.999 - . logic_name=eponine scaffold_2733 . repeat_region 326 509 . ? . description=trf scaffold_2733 . repeat_region 1229 1237 . ? . description=dust scaffold_2733 . repeat_region 1881 1985 . + . description=(TG)n scaffold_2733 . repeat_region 1901 1979 . ? . description=dust scaffold_2733 . repeat_region 1951 1979 . ? . description=trf scaffold_2733 ensembl tRNA_gene 1772 1838 . + . ID=EPrPRAG00000000196;biotype=tRNA;description=tRNA-Phe for anticodon AAA [Source:TRNASCAN_SE%3BAcc:tRNA-Phe];external_name=tRNA-Phe;logic_name=ncrna_eg scaffold_2733 ensembl transcript 1772 1838 . + . ID=EPrPRAT00000000196;Parent=EPrPRAG00000000196;biotype=tRNA;logic_name=ncrna_eg scaffold_2733 . exon 1772 1838 . + . ID=EPrPRAE00000000196;Parent=EPrPRAT00000000196;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2732 1 2586 scaffold_2732 . biological_region 2306 2310 0.999 + . logic_name=eponine scaffold_2732 . biological_region 2322 2325 0.999 + . logic_name=eponine scaffold_2732 ensembl protein_coding_gene 2104 2564 . + . ID=Phyra46206;biotype=protein_coding;external_name=gwEuk.2732.3.1;logic_name=jgi_phyra1 scaffold_2732 ensembl transcript 2104 2564 . + . ID=Phyra46206;Parent=Phyra46206;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2732 . CDS 2104 2265 . + 0 ID=Phyra46206;Parent=Phyra46206;rank=1 scaffold_2732 . exon 2104 2265 . + . ID=Phyra46206.1;Parent=Phyra46206;constitutive=1;rank=1 scaffold_2732 . CDS 2340 2564 . + 0 ID=Phyra46206;Parent=Phyra46206;rank=2 scaffold_2732 . exon 2340 2564 . + . ID=Phyra46206.2;Parent=Phyra46206;constitutive=1;rank=2 scaffold_2732 ensembl protein_coding_gene 538 1605 . + . ID=Phyra72554;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2732000001;logic_name=jgi_phyra1 scaffold_2732 ensembl transcript 538 1605 . + . ID=Phyra72554;Parent=Phyra72554;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2732 . CDS 538 1605 . + 0 ID=Phyra72554;Parent=Phyra72554;rank=1 scaffold_2732 . exon 538 1605 . + . ID=Phyra72554.1;Parent=Phyra72554;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2731 1 2593 scaffold_2731 . repeat_region 1452 1464 . ? . description=dust scaffold_2731 . biological_region 2064 2068 0.999 - . logic_name=eponine scaffold_2731 ensembl protein_coding_gene 15 656 . - . ID=Phyra87825;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2731000001;logic_name=jgi_phyra1 scaffold_2731 ensembl transcript 15 656 . - . ID=Phyra87825;Parent=Phyra87825;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2731 . CDS 15 656 . - 0 ID=Phyra87825;Parent=Phyra87825;rank=1 scaffold_2731 . exon 15 656 . - . ID=Phyra87825.1;Parent=Phyra87825;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2730 1 2594 scaffold_2730 . biological_region 522 523 0.999 - . logic_name=eponine scaffold_2730 . biological_region 575 580 0.999 + . logic_name=eponine scaffold_2730 . biological_region 630 633 0.999 + . logic_name=eponine scaffold_2730 . biological_region 708 714 0.999 - . logic_name=eponine scaffold_2730 ensembl protein_coding_gene 228 923 . - . ID=Phyra87824;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2730000001;logic_name=jgi_phyra1 scaffold_2730 ensembl transcript 228 923 . - . ID=Phyra87824;Parent=Phyra87824;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2730 . CDS 228 408 . - 0 ID=Phyra87824;Parent=Phyra87824;rank=4 scaffold_2730 . exon 228 408 . - . ID=Phyra87824.4;Parent=Phyra87824;constitutive=1;ensembl_phase=2;rank=4 scaffold_2730 . CDS 431 592 . - 0 ID=Phyra87824;Parent=Phyra87824;rank=3 scaffold_2730 . exon 431 592 . - . ID=Phyra87824.3;Parent=Phyra87824;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_2730 . CDS 679 762 . - 0 ID=Phyra87824;Parent=Phyra87824;rank=2 scaffold_2730 . exon 679 762 . - . ID=Phyra87824.2;Parent=Phyra87824;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2730 . CDS 802 923 . - 0 ID=Phyra87824;Parent=Phyra87824;rank=1 scaffold_2730 . exon 802 923 . - . ID=Phyra87824.1;Parent=Phyra87824;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2729 1 2636 scaffold_2729 . repeat_region 1403 1410 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2618 1 2652 scaffold_2618 . repeat_region 1101 1130 . ? . description=dust scaffold_2618 . repeat_region 1180 1189 . ? . description=dust scaffold_2618 . biological_region 2088 2090 0.999 + . logic_name=eponine scaffold_2618 ensembl protein_coding_gene 1726 2600 . + . ID=Phyra87761;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2618000001;logic_name=jgi_phyra1 scaffold_2618 ensembl transcript 1726 2600 . + . ID=Phyra87761;Parent=Phyra87761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2618 . CDS 1726 2600 . + 0 ID=Phyra87761;Parent=Phyra87761;rank=1 scaffold_2618 . exon 1726 2600 . + . ID=Phyra87761.1;Parent=Phyra87761;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2728 1 2653 scaffold_2728 . repeat_region 553 560 . ? . description=dust scaffold_2728 . repeat_region 2617 2637 . ? . description=trf scaffold_2728 . repeat_region 2617 2637 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2633 1 2656 scaffold_2633 . biological_region 454 458 0.999 - . logic_name=eponine scaffold_2633 . biological_region 494 495 0.999 + . logic_name=eponine scaffold_2633 . biological_region 557 560 0.999 - . logic_name=eponine scaffold_2633 . biological_region 609 611 0.999 - . logic_name=eponine scaffold_2633 . biological_region 2107 2109 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2727 1 2663 scaffold_2727 . repeat_region 404 701 . + . description=Polinton-1_PI scaffold_2727 . repeat_region 602 644 . ? . description=trf scaffold_2727 . repeat_region 1304 2662 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_2726 1 2674 scaffold_2726 . biological_region 1325 1331 0.999 + . logic_name=eponine scaffold_2726 ensembl protein_coding_gene 855 2533 . - . ID=Phyra87823;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2726000001;logic_name=jgi_phyra1 scaffold_2726 ensembl transcript 855 2533 . - . ID=Phyra87823;Parent=Phyra87823;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2726 . CDS 855 1506 . - 0 ID=Phyra87823;Parent=Phyra87823;rank=3 scaffold_2726 . exon 855 1506 . - . ID=Phyra87823.3;Parent=Phyra87823;constitutive=1;ensembl_phase=2;rank=3 scaffold_2726 . CDS 1871 2120 . - 0 ID=Phyra87823;Parent=Phyra87823;rank=2 scaffold_2726 . exon 1871 2120 . - . ID=Phyra87823.2;Parent=Phyra87823;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2726 . CDS 2395 2533 . - 0 ID=Phyra87823;Parent=Phyra87823;rank=1 scaffold_2726 . exon 2395 2533 . - . ID=Phyra87823.1;Parent=Phyra87823;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2725 1 2680 scaffold_2725 . repeat_region 498 506 . ? . description=dust scaffold_2725 . biological_region 1706 1710 0.999 + . logic_name=eponine scaffold_2725 . biological_region 1730 1731 0.999 + . logic_name=eponine scaffold_2725 . biological_region 1759 1760 0.999 + . logic_name=eponine scaffold_2725 . biological_region 2456 2463 0.999 + . logic_name=eponine scaffold_2725 . biological_region 2482 2483 0.999 + . logic_name=eponine scaffold_2725 . biological_region 2511 2512 0.999 + . logic_name=eponine scaffold_2725 . repeat_region 2600 2663 . ? . description=dust scaffold_2725 ensembl tRNA_gene 1922 2003 . + . ID=EPrPRAG00000000171;biotype=tRNA;description=tRNA-Leu for anticodon AAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_2725 ensembl transcript 1922 2003 . + . ID=EPrPRAT00000000171;Parent=EPrPRAG00000000171;biotype=tRNA;logic_name=ncrna_eg scaffold_2725 . exon 1922 2003 . + . ID=EPrPRAE00000000171;Parent=EPrPRAT00000000171;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2724 1 2692 scaffold_2724 ensembl protein_coding_gene 48 2682 . + . ID=Phyra87822;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2724000001;logic_name=jgi_phyra1 scaffold_2724 ensembl transcript 48 2682 . + . ID=Phyra87822;Parent=Phyra87822;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2724 . CDS 48 1251 . + 0 ID=Phyra87822;Parent=Phyra87822;rank=1 scaffold_2724 . exon 48 1251 . + . ID=Phyra87822.1;Parent=Phyra87822;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2724 . CDS 1274 2682 . + 0 ID=Phyra87822;Parent=Phyra87822;rank=2 scaffold_2724 . exon 1274 2682 . + . ID=Phyra87822.2;Parent=Phyra87822;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2723 1 2699 scaffold_2723 . repeat_region 2165 2174 . ? . description=dust scaffold_2723 ensembl protein_coding_gene 62 1948 . + . ID=Phyra87821;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2723000001;logic_name=jgi_phyra1 scaffold_2723 ensembl transcript 62 1948 . + . ID=Phyra87821;Parent=Phyra87821;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2723 . CDS 62 535 . + 0 ID=Phyra87821;Parent=Phyra87821;rank=1 scaffold_2723 . exon 62 535 . + . ID=Phyra87821.1;Parent=Phyra87821;constitutive=1;rank=1 scaffold_2723 . CDS 824 1948 . + 0 ID=Phyra87821;Parent=Phyra87821;rank=2 scaffold_2723 . exon 824 1948 . + . ID=Phyra87821.2;Parent=Phyra87821;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2722 1 2700 scaffold_2722 . biological_region 2003 2005 0.999 + . logic_name=eponine scaffold_2722 . biological_region 2197 2197 0.999 - . logic_name=eponine scaffold_2722 ensembl protein_coding_gene 1893 2531 . - . ID=Phyra87820;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2722000001;logic_name=jgi_phyra1 scaffold_2722 ensembl transcript 1893 2531 . - . ID=Phyra87820;Parent=Phyra87820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2722 . CDS 1893 2531 . - 0 ID=Phyra87820;Parent=Phyra87820;rank=1 scaffold_2722 . exon 1893 2531 . - . ID=Phyra87820.1;Parent=Phyra87820;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2721 1 2710 scaffold_2721 . biological_region 2226 2228 0.999 - . logic_name=eponine scaffold_2721 . biological_region 2293 2295 0.999 - . logic_name=eponine scaffold_2721 . biological_region 2308 2316 0.999 + . logic_name=eponine scaffold_2721 . biological_region 2675 2676 0.999 - . logic_name=eponine scaffold_2721 ensembl protein_coding_gene 2172 2698 . + . ID=Phyra87819;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2721000001;logic_name=jgi_phyra1 scaffold_2721 ensembl transcript 2172 2698 . + . ID=Phyra87819;Parent=Phyra87819;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2721 . CDS 2172 2698 . + 0 ID=Phyra87819;Parent=Phyra87819;rank=1 scaffold_2721 . exon 2172 2698 . + . ID=Phyra87819.1;Parent=Phyra87819;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2720 1 2715 scaffold_2720 . biological_region 377 378 0.999 + . logic_name=eponine scaffold_2720 . repeat_region 2427 2460 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2717 1 2718 scaffold_2717 . repeat_region 389 408 . ? . description=trf scaffold_2717 . repeat_region 1412 1419 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2718 1 2719 scaffold_2718 . repeat_region 730 772 . ? . description=trf scaffold_2718 . repeat_region 1799 1819 . ? . description=trf scaffold_2718 ensembl protein_coding_gene 7 621 . + . ID=Phyra46202;biotype=protein_coding;external_name=gwEuk.2718.4.1;logic_name=jgi_phyra1 scaffold_2718 ensembl transcript 7 621 . + . ID=Phyra46202;Parent=Phyra46202;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2718 . CDS 7 621 . + 0 ID=Phyra46202;Parent=Phyra46202;rank=1 scaffold_2718 . exon 7 621 . + . ID=Phyra46202.1;Parent=Phyra46202;constitutive=1;rank=1 scaffold_2718 ensembl protein_coding_gene 1064 2694 . + . ID=Phyra87818;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2718000002;logic_name=jgi_phyra1 scaffold_2718 ensembl transcript 1064 2694 . + . ID=Phyra87818;Parent=Phyra87818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2718 . CDS 1064 1764 . + 0 ID=Phyra87818;Parent=Phyra87818;rank=1 scaffold_2718 . exon 1064 1764 . + . ID=Phyra87818.1;Parent=Phyra87818;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2718 . CDS 1792 1960 . + 0 ID=Phyra87818;Parent=Phyra87818;rank=2 scaffold_2718 . exon 1792 1960 . + . ID=Phyra87818.2;Parent=Phyra87818;constitutive=1;ensembl_phase=2;rank=2 scaffold_2718 . CDS 2033 2694 . + 0 ID=Phyra87818;Parent=Phyra87818;rank=3 scaffold_2718 . exon 2033 2694 . + . ID=Phyra87818.3;Parent=Phyra87818;constitutive=1;ensembl_end_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_2719 1 2719 ##gff-version 3 ##sequence-region scaffold_2716 1 2732 scaffold_2716 . repeat_region 2717 2724 . ? . description=dust scaffold_2716 ensembl protein_coding_gene 36 2516 . - . ID=Phyra87816;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2716000001;logic_name=jgi_phyra1 scaffold_2716 ensembl transcript 36 2516 . - . ID=Phyra87816;Parent=Phyra87816;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2716 . CDS 36 2516 . - 0 ID=Phyra87816;Parent=Phyra87816;rank=1 scaffold_2716 . exon 36 2516 . - . ID=Phyra87816.1;Parent=Phyra87816;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2715 1 2736 scaffold_2715 . repeat_region 254 367 . + . description=Gypsy-1-I_PI-int scaffold_2715 . biological_region 992 993 0.999 + . logic_name=eponine scaffold_2715 . repeat_region 1295 1475 . ? . description=trf scaffold_2715 . repeat_region 1805 1880 . ? . description=trf scaffold_2715 . repeat_region 2278 2736 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2714 1 2746 ##gff-version 3 ##sequence-region scaffold_2712 1 2754 scaffold_2712 . biological_region 1514 1514 0.999 - . logic_name=eponine scaffold_2712 ensembl protein_coding_gene 11 1566 . - . ID=Phyra87813;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2712000001;logic_name=jgi_phyra1 scaffold_2712 ensembl transcript 11 1566 . - . ID=Phyra87813;Parent=Phyra87813;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2712 . CDS 11 1284 . - 0 ID=Phyra87813;Parent=Phyra87813;rank=2 scaffold_2712 . exon 11 1284 . - . ID=Phyra87813.2;Parent=Phyra87813;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2712 . CDS 1352 1566 . - 0 ID=Phyra87813;Parent=Phyra87813;rank=1 scaffold_2712 . exon 1352 1566 . - . ID=Phyra87813.1;Parent=Phyra87813;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2712 ensembl protein_coding_gene 1932 2744 . + . ID=Phyra87814;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2712000002;logic_name=jgi_phyra1 scaffold_2712 ensembl transcript 1932 2744 . + . ID=Phyra87814;Parent=Phyra87814;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2712 . CDS 1932 2744 . + 0 ID=Phyra87814;Parent=Phyra87814;rank=1 scaffold_2712 . exon 1932 2744 . + . ID=Phyra87814.1;Parent=Phyra87814;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2713 1 2754 scaffold_2713 . biological_region 69 72 0.999 - . logic_name=eponine scaffold_2713 . biological_region 125 127 0.999 + . logic_name=eponine scaffold_2713 . biological_region 676 677 0.999 - . logic_name=eponine scaffold_2713 . biological_region 1375 1378 0.999 - . logic_name=eponine scaffold_2713 . biological_region 1430 1433 0.999 - . logic_name=eponine scaffold_2713 ensembl protein_coding_gene 1 2498 . + . ID=Phyra87815;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2713000001;logic_name=jgi_phyra1 scaffold_2713 ensembl transcript 1 2498 . + . ID=Phyra87815;Parent=Phyra87815;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2713 . exon 1 305 . + . ID=Phyra87815.1;Parent=Phyra87815;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_2713 . CDS 2 305 . + 0 ID=Phyra87815;Parent=Phyra87815;rank=1 scaffold_2713 . CDS 373 2498 . + 0 ID=Phyra87815;Parent=Phyra87815;rank=2 scaffold_2713 . exon 373 2498 . + . ID=Phyra87815.2;Parent=Phyra87815;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2711 1 2759 scaffold_2711 . repeat_region 161 237 . ? . description=trf scaffold_2711 . repeat_region 161 237 . ? . description=trf scaffold_2711 . repeat_region 161 250 . ? . description=dust scaffold_2711 ensembl protein_coding_gene 2101 2340 . + . ID=Phyra46198;biotype=protein_coding;external_name=gwEuk.2711.1.1;logic_name=jgi_phyra1 scaffold_2711 ensembl transcript 2101 2340 . + . ID=Phyra46198;Parent=Phyra46198;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2711 . CDS 2101 2340 . + 0 ID=Phyra46198;Parent=Phyra46198;rank=1 scaffold_2711 . exon 2101 2340 . + . ID=Phyra46198.1;Parent=Phyra46198;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2710 1 2760 scaffold_2710 . repeat_region 258 287 . - . description=Polinton-1_PI scaffold_2710 . repeat_region 454 746 . - . description=Polinton-1_PI scaffold_2710 . repeat_region 807 851 . + . description=Polinton-1_PI scaffold_2710 . repeat_region 877 1061 . + . description=Polinton-1_PI scaffold_2710 ensembl protein_coding_gene 52 612 . - . ID=Phyra87812;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2710000001;logic_name=jgi_phyra1 scaffold_2710 ensembl transcript 52 612 . - . ID=Phyra87812;Parent=Phyra87812;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2710 . CDS 52 612 . - 0 ID=Phyra87812;Parent=Phyra87812;rank=1 scaffold_2710 . exon 52 612 . - . ID=Phyra87812.1;Parent=Phyra87812;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2709 1 2769 scaffold_2709 . repeat_region 941 954 . ? . description=dust scaffold_2709 . repeat_region 1508 1554 . ? . description=trf scaffold_2709 ensembl protein_coding_gene 101 541 . + . ID=Phyra87810;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2709000001;logic_name=jgi_phyra1 scaffold_2709 ensembl transcript 101 541 . + . ID=Phyra87810;Parent=Phyra87810;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2709 . CDS 101 541 . + 0 ID=Phyra87810;Parent=Phyra87810;rank=1 scaffold_2709 . exon 101 541 . + . ID=Phyra87810.1;Parent=Phyra87810;constitutive=1;rank=1 scaffold_2709 ensembl protein_coding_gene 1902 2727 . + . ID=Phyra87811;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2709000002;logic_name=jgi_phyra1 scaffold_2709 ensembl transcript 1902 2727 . + . ID=Phyra87811;Parent=Phyra87811;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2709 . CDS 1902 2727 . + 0 ID=Phyra87811;Parent=Phyra87811;rank=1 scaffold_2709 . exon 1902 2727 . + . ID=Phyra87811.1;Parent=Phyra87811;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2708 1 2772 scaffold_2708 . repeat_region 1676 1719 . ? . description=trf scaffold_2708 . repeat_region 1739 1865 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2601 1 2779 scaffold_2601 . biological_region 1554 1558 0.999 + . logic_name=eponine scaffold_2601 . biological_region 1620 1622 0.999 - . logic_name=eponine scaffold_2601 . biological_region 1656 1659 0.999 + . logic_name=eponine scaffold_2601 . repeat_region 2198 2272 . - . description=GypsyPi-1c_I-int scaffold_2601 . repeat_region 2411 2492 . - . description=GypsyPi-1c_I-int scaffold_2601 . repeat_region 2653 2779 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_2707 1 2783 scaffold_2707 ensembl protein_coding_gene 4 607 . - . ID=Phyra87809;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2707000001;logic_name=jgi_phyra1 scaffold_2707 ensembl transcript 4 607 . - . ID=Phyra87809;Parent=Phyra87809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2707 . CDS 4 63 . - 0 ID=Phyra87809;Parent=Phyra87809;rank=3 scaffold_2707 . exon 4 63 . - . ID=Phyra87809.3;Parent=Phyra87809;constitutive=1;rank=3 scaffold_2707 . CDS 111 382 . - 0 ID=Phyra87809;Parent=Phyra87809;rank=2 scaffold_2707 . exon 111 382 . - . ID=Phyra87809.2;Parent=Phyra87809;constitutive=1;ensembl_phase=1;rank=2 scaffold_2707 . CDS 502 607 . - 0 ID=Phyra87809;Parent=Phyra87809;rank=1 scaffold_2707 . exon 502 607 . - . ID=Phyra87809.1;Parent=Phyra87809;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2705 1 2794 scaffold_2705 ensembl protein_coding_gene 97 2498 . + . ID=Phyra87808;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2705000001;logic_name=jgi_phyra1 scaffold_2705 ensembl transcript 97 2498 . + . ID=Phyra87808;Parent=Phyra87808;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2705 . CDS 97 1147 . + 0 ID=Phyra87808;Parent=Phyra87808;rank=1 scaffold_2705 . exon 97 1147 . + . ID=Phyra87808.1;Parent=Phyra87808;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2705 . CDS 1224 1279 . + 0 ID=Phyra87808;Parent=Phyra87808;rank=2 scaffold_2705 . exon 1224 1279 . + . ID=Phyra87808.2;Parent=Phyra87808;constitutive=1;ensembl_phase=1;rank=2 scaffold_2705 . CDS 1652 1717 . + 0 ID=Phyra87808;Parent=Phyra87808;rank=3 scaffold_2705 . exon 1652 1717 . + . ID=Phyra87808.3;Parent=Phyra87808;constitutive=1;rank=3 scaffold_2705 . CDS 1791 2498 . + 0 ID=Phyra87808;Parent=Phyra87808;rank=4 scaffold_2705 . exon 1791 2498 . + . ID=Phyra87808.4;Parent=Phyra87808;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_2704 1 2802 ##gff-version 3 ##sequence-region scaffold_2703 1 2805 scaffold_2703 . biological_region 2159 2167 0.999 + . logic_name=eponine scaffold_2703 . biological_region 2173 2174 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2702 1 2816 scaffold_2702 . repeat_region 2749 2795 . ? . description=trf scaffold_2702 ensembl protein_coding_gene 1045 1923 . + . ID=Phyra87807;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2702000001;logic_name=jgi_phyra1 scaffold_2702 ensembl transcript 1045 1923 . + . ID=Phyra87807;Parent=Phyra87807;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2702 . CDS 1045 1923 . + 0 ID=Phyra87807;Parent=Phyra87807;rank=1 scaffold_2702 . exon 1045 1923 . + . ID=Phyra87807.1;Parent=Phyra87807;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2701 1 2833 scaffold_2701 . biological_region 1602 1608 0.999 - . logic_name=eponine scaffold_2701 . biological_region 1620 1623 0.999 - . logic_name=eponine scaffold_2701 ensembl protein_coding_gene 1540 2455 . - . ID=Phyra87806;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2701000001;logic_name=jgi_phyra1 scaffold_2701 ensembl transcript 1540 2455 . - . ID=Phyra87806;Parent=Phyra87806;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2701 . CDS 1540 1644 . - 0 ID=Phyra87806;Parent=Phyra87806;rank=4 scaffold_2701 . exon 1540 1644 . - . ID=Phyra87806.4;Parent=Phyra87806;constitutive=1;rank=4 scaffold_2701 . CDS 1715 2179 . - 0 ID=Phyra87806;Parent=Phyra87806;rank=3 scaffold_2701 . exon 1715 2179 . - . ID=Phyra87806.3;Parent=Phyra87806;constitutive=1;rank=3 scaffold_2701 . CDS 2282 2393 . - 0 ID=Phyra87806;Parent=Phyra87806;rank=2 scaffold_2701 . exon 2282 2393 . - . ID=Phyra87806.2;Parent=Phyra87806;constitutive=1;ensembl_phase=2;rank=2 scaffold_2701 . CDS 2430 2455 . - 0 ID=Phyra87806;Parent=Phyra87806;rank=1 scaffold_2701 . exon 2430 2455 . - . ID=Phyra87806.1;Parent=Phyra87806;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2700 1 2834 scaffold_2700 . biological_region 1624 1629 0.999 + . logic_name=eponine scaffold_2700 ensembl protein_coding_gene 441 1865 . - . ID=Phyra87804;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2700000001;logic_name=jgi_phyra1 scaffold_2700 ensembl transcript 441 1865 . - . ID=Phyra87804;Parent=Phyra87804;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2700 . CDS 441 722 . - 0 ID=Phyra87804;Parent=Phyra87804;rank=4 scaffold_2700 . exon 441 722 . - . ID=Phyra87804.4;Parent=Phyra87804;constitutive=1;rank=4 scaffold_2700 . CDS 796 822 . - 0 ID=Phyra87804;Parent=Phyra87804;rank=3 scaffold_2700 . exon 796 822 . - . ID=Phyra87804.3;Parent=Phyra87804;constitutive=1;rank=3 scaffold_2700 . CDS 911 1443 . - 0 ID=Phyra87804;Parent=Phyra87804;rank=2 scaffold_2700 . exon 911 1443 . - . ID=Phyra87804.2;Parent=Phyra87804;constitutive=1;ensembl_phase=1;rank=2 scaffold_2700 . CDS 1511 1865 . - 0 ID=Phyra87804;Parent=Phyra87804;rank=1 scaffold_2700 . exon 1511 1865 . - . ID=Phyra87804.1;Parent=Phyra87804;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2700 ensembl protein_coding_gene 2195 2782 . - . ID=Phyra87805;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2700000002;logic_name=jgi_phyra1 scaffold_2700 ensembl transcript 2195 2782 . - . ID=Phyra87805;Parent=Phyra87805;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2700 . CDS 2195 2782 . - 0 ID=Phyra87805;Parent=Phyra87805;rank=1 scaffold_2700 . exon 2195 2782 . - . ID=Phyra87805.1;Parent=Phyra87805;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2699 1 2837 scaffold_2699 . repeat_region 550 592 . ? . description=trf scaffold_2699 . repeat_region 2076 2093 . ? . description=dust scaffold_2699 ensembl protein_coding_gene 46 456 . + . ID=Phyra72552;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2699000001;logic_name=jgi_phyra1 scaffold_2699 ensembl transcript 46 456 . + . ID=Phyra72552;Parent=Phyra72552;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2699 . CDS 46 456 . + 0 ID=Phyra72552;Parent=Phyra72552;rank=1 scaffold_2699 . exon 46 456 . + . ID=Phyra72552.1;Parent=Phyra72552;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2697 1 2838 ##gff-version 3 ##sequence-region scaffold_2698 1 2839 scaffold_2698 . repeat_region 6 48 . ? . description=trf scaffold_2698 . repeat_region 2085 2126 . ? . description=trf scaffold_2698 ensembl protein_coding_gene 99 2774 . - . ID=Phyra87802;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2698000001;logic_name=jgi_phyra1 scaffold_2698 ensembl transcript 99 2774 . - . ID=Phyra87802;Parent=Phyra87802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2698 . CDS 99 1902 . - 0 ID=Phyra87802;Parent=Phyra87802;rank=3 scaffold_2698 . exon 99 1902 . - . ID=Phyra87802.3;Parent=Phyra87802;constitutive=1;ensembl_phase=2;rank=3 scaffold_2698 . CDS 2069 2145 . - 0 ID=Phyra87802;Parent=Phyra87802;rank=2 scaffold_2698 . exon 2069 2145 . - . ID=Phyra87802.2;Parent=Phyra87802;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2698 . CDS 2205 2774 . - 0 ID=Phyra87802;Parent=Phyra87802;rank=1 scaffold_2698 . exon 2205 2774 . - . ID=Phyra87802.1;Parent=Phyra87802;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2696 1 2856 scaffold_2696 . biological_region 1967 1968 0.999 - . logic_name=eponine scaffold_2696 . biological_region 2652 2653 0.999 - . logic_name=eponine scaffold_2696 . biological_region 2655 2657 0.999 + . logic_name=eponine scaffold_2696 ensembl protein_coding_gene 5 340 . + . ID=Phyra87800;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2696000001;logic_name=jgi_phyra1 scaffold_2696 ensembl transcript 5 340 . + . ID=Phyra87800;Parent=Phyra87800;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2696 . CDS 5 340 . + 0 ID=Phyra87800;Parent=Phyra87800;rank=1 scaffold_2696 . exon 5 340 . + . ID=Phyra87800.1;Parent=Phyra87800;constitutive=1;rank=1 scaffold_2696 ensembl protein_coding_gene 1179 2729 . - . ID=Phyra87801;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2696000002;logic_name=jgi_phyra1 scaffold_2696 ensembl transcript 1179 2729 . - . ID=Phyra87801;Parent=Phyra87801;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2696 . CDS 1179 2729 . - 0 ID=Phyra87801;Parent=Phyra87801;rank=1 scaffold_2696 . exon 1179 2729 . - . ID=Phyra87801.1;Parent=Phyra87801;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2694 1 2865 scaffold_2694 . repeat_region 1553 1573 . ? . description=trf scaffold_2694 . biological_region 1803 1805 0.999 - . logic_name=eponine scaffold_2694 ensembl protein_coding_gene 186 1349 . - . ID=Phyra72551;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2694000001;logic_name=jgi_phyra1 scaffold_2694 ensembl transcript 186 1349 . - . ID=Phyra72551;Parent=Phyra72551;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2694 . CDS 186 1349 . - 0 ID=Phyra72551;Parent=Phyra72551;rank=1 scaffold_2694 . exon 186 1349 . - . ID=Phyra72551.1;Parent=Phyra72551;constitutive=1;rank=1 scaffold_2694 ensembl protein_coding_gene 1734 2847 . + . ID=Phyra87799;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2694000002;logic_name=jgi_phyra1 scaffold_2694 ensembl transcript 1734 2847 . + . ID=Phyra87799;Parent=Phyra87799;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2694 . CDS 1734 2274 . + 0 ID=Phyra87799;Parent=Phyra87799;rank=1 scaffold_2694 . exon 1734 2274 . + . ID=Phyra87799.1;Parent=Phyra87799;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2694 . CDS 2342 2748 . + 0 ID=Phyra87799;Parent=Phyra87799;rank=2 scaffold_2694 . exon 2342 2748 . + . ID=Phyra87799.2;Parent=Phyra87799;constitutive=1;ensembl_phase=1;rank=2 scaffold_2694 . CDS 2827 2847 . + 0 ID=Phyra87799;Parent=Phyra87799;rank=3 scaffold_2694 . exon 2827 2847 . + . ID=Phyra87799.3;Parent=Phyra87799;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_2692 1 2866 scaffold_2692 . biological_region 2596 2597 0.999 - . logic_name=eponine scaffold_2692 ensembl protein_coding_gene 19 2720 . - . ID=Phyra87797;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2692000001;logic_name=jgi_phyra1 scaffold_2692 ensembl transcript 19 2720 . - . ID=Phyra87797;Parent=Phyra87797;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2692 . CDS 19 33 . - 0 ID=Phyra87797;Parent=Phyra87797;rank=6 scaffold_2692 . exon 19 33 . - . ID=Phyra87797.6;Parent=Phyra87797;constitutive=1;rank=6 scaffold_2692 . CDS 77 179 . - 0 ID=Phyra87797;Parent=Phyra87797;rank=5 scaffold_2692 . exon 77 179 . - . ID=Phyra87797.5;Parent=Phyra87797;constitutive=1;ensembl_phase=2;rank=5 scaffold_2692 . CDS 318 553 . - 0 ID=Phyra87797;Parent=Phyra87797;rank=4 scaffold_2692 . exon 318 553 . - . ID=Phyra87797.4;Parent=Phyra87797;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2692 . CDS 777 1641 . - 0 ID=Phyra87797;Parent=Phyra87797;rank=3 scaffold_2692 . exon 777 1641 . - . ID=Phyra87797.3;Parent=Phyra87797;constitutive=1;ensembl_phase=2;rank=3 scaffold_2692 . CDS 1835 1862 . - 0 ID=Phyra87797;Parent=Phyra87797;rank=2 scaffold_2692 . exon 1835 1862 . - . ID=Phyra87797.2;Parent=Phyra87797;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2692 . CDS 1997 2720 . - 0 ID=Phyra87797;Parent=Phyra87797;rank=1 scaffold_2692 . exon 1997 2720 . - . ID=Phyra87797.1;Parent=Phyra87797;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2693 1 2866 scaffold_2693 . repeat_region 14 1107 . + . description=GypsyPi-1c_I-int scaffold_2693 . repeat_region 1149 1968 . ? . description=dust scaffold_2693 . biological_region 2639 2643 0.999 + . logic_name=eponine scaffold_2693 ensembl protein_coding_gene 655 981 . + . ID=Phyra46037;biotype=protein_coding;external_name=gwEuk.2693.3.1;logic_name=jgi_phyra1 scaffold_2693 ensembl transcript 655 981 . + . ID=Phyra46037;Parent=Phyra46037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2693 . CDS 655 981 . + 0 ID=Phyra46037;Parent=Phyra46037;rank=1 scaffold_2693 . exon 655 981 . + . ID=Phyra46037.1;Parent=Phyra46037;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2695 1 2867 scaffold_2695 . repeat_region 683 696 . ? . description=dust scaffold_2695 . repeat_region 2723 2731 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2691 1 2872 scaffold_2691 . repeat_region 761 786 . ? . description=dust scaffold_2691 . biological_region 2343 2348 0.999 + . logic_name=eponine scaffold_2691 . biological_region 2437 2441 0.999 + . logic_name=eponine scaffold_2691 . biological_region 2731 2733 0.999 + . logic_name=eponine scaffold_2691 . biological_region 2783 2785 0.999 - . logic_name=eponine scaffold_2691 ensembl protein_coding_gene 752 2522 . + . ID=Phyra87796;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2691000001;logic_name=jgi_phyra1 scaffold_2691 ensembl transcript 752 2522 . + . ID=Phyra87796;Parent=Phyra87796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2691 . CDS 752 2312 . + 0 ID=Phyra87796;Parent=Phyra87796;rank=1 scaffold_2691 . exon 752 2312 . + . ID=Phyra87796.1;Parent=Phyra87796;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2691 . CDS 2350 2522 . + 0 ID=Phyra87796;Parent=Phyra87796;rank=2 scaffold_2691 . exon 2350 2522 . + . ID=Phyra87796.2;Parent=Phyra87796;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2690 1 2878 scaffold_2690 ensembl protein_coding_gene 76 756 . + . ID=Phyra87794;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2690000001;logic_name=jgi_phyra1 scaffold_2690 ensembl transcript 76 756 . + . ID=Phyra87794;Parent=Phyra87794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2690 . CDS 76 756 . + 0 ID=Phyra87794;Parent=Phyra87794;rank=1 scaffold_2690 . exon 76 756 . + . ID=Phyra87794.1;Parent=Phyra87794;constitutive=1;rank=1 scaffold_2690 ensembl protein_coding_gene 1029 1943 . - . ID=Phyra87795;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2690000002;logic_name=jgi_phyra1 scaffold_2690 ensembl transcript 1029 1943 . - . ID=Phyra87795;Parent=Phyra87795;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2690 . CDS 1029 1088 . - 0 ID=Phyra87795;Parent=Phyra87795;rank=6 scaffold_2690 . exon 1029 1088 . - . ID=Phyra87795.6;Parent=Phyra87795;constitutive=1;rank=6 scaffold_2690 . CDS 1170 1207 . - 0 ID=Phyra87795;Parent=Phyra87795;rank=5 scaffold_2690 . exon 1170 1207 . - . ID=Phyra87795.5;Parent=Phyra87795;constitutive=1;ensembl_phase=1;rank=5 scaffold_2690 . CDS 1288 1375 . - 0 ID=Phyra87795;Parent=Phyra87795;rank=4 scaffold_2690 . exon 1288 1375 . - . ID=Phyra87795.4;Parent=Phyra87795;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_2690 . CDS 1448 1528 . - 0 ID=Phyra87795;Parent=Phyra87795;rank=3 scaffold_2690 . exon 1448 1528 . - . ID=Phyra87795.3;Parent=Phyra87795;constitutive=1;rank=3 scaffold_2690 . CDS 1596 1719 . - 0 ID=Phyra87795;Parent=Phyra87795;rank=2 scaffold_2690 . exon 1596 1719 . - . ID=Phyra87795.2;Parent=Phyra87795;constitutive=1;ensembl_phase=2;rank=2 scaffold_2690 . CDS 1813 1943 . - 0 ID=Phyra87795;Parent=Phyra87795;rank=1 scaffold_2690 . exon 1813 1943 . - . ID=Phyra87795.1;Parent=Phyra87795;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2689 1 2895 scaffold_2689 . biological_region 371 377 0.999 - . logic_name=eponine scaffold_2689 . biological_region 423 424 0.999 - . logic_name=eponine scaffold_2689 . biological_region 431 433 0.999 + . logic_name=eponine scaffold_2689 . biological_region 1944 1944 0.999 + . logic_name=eponine scaffold_2689 . biological_region 2019 2022 0.999 + . logic_name=eponine scaffold_2689 . biological_region 2028 2031 0.999 - . logic_name=eponine scaffold_2689 ensembl protein_coding_gene 50 2221 . - . ID=Phyra87793;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2689000001;logic_name=jgi_phyra1 scaffold_2689 ensembl transcript 50 2221 . - . ID=Phyra87793;Parent=Phyra87793;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2689 . CDS 50 2221 . - 0 ID=Phyra87793;Parent=Phyra87793;rank=1 scaffold_2689 . exon 50 2221 . - . ID=Phyra87793.1;Parent=Phyra87793;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2688 1 2908 scaffold_2688 . biological_region 542 543 0.999 + . logic_name=eponine scaffold_2688 . biological_region 594 598 0.999 + . logic_name=eponine scaffold_2688 . biological_region 595 599 0.999 - . logic_name=eponine scaffold_2688 . biological_region 641 643 0.999 - . logic_name=eponine scaffold_2688 ensembl protein_coding_gene 237 2891 . + . ID=Phyra87792;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2688000001;logic_name=jgi_phyra1 scaffold_2688 ensembl transcript 237 2891 . + . ID=Phyra87792;Parent=Phyra87792;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2688 . CDS 237 2891 . + 0 ID=Phyra87792;Parent=Phyra87792;rank=1 scaffold_2688 . exon 237 2891 . + . ID=Phyra87792.1;Parent=Phyra87792;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2687 1 2922 ##gff-version 3 ##sequence-region scaffold_2685 1 2924 scaffold_2685 . biological_region 2008 2009 0.999 - . logic_name=eponine scaffold_2685 . biological_region 2622 2628 0.999 + . logic_name=eponine scaffold_2685 ensembl protein_coding_gene 2553 2924 . - . ID=Phyra87791;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2685000001;logic_name=jgi_phyra1 scaffold_2685 ensembl transcript 2553 2924 . - . ID=Phyra87791;Parent=Phyra87791;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2685 . CDS 2553 2924 . - 0 ID=Phyra87791;Parent=Phyra87791;rank=1 scaffold_2685 . exon 2553 2924 . - . ID=Phyra87791.1;Parent=Phyra87791;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2686 1 2924 scaffold_2686 . repeat_region 1356 1398 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2485 1 2930 scaffold_2485 ensembl protein_coding_gene 1943 2907 . - . ID=Phyra87723;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2485000001;logic_name=jgi_phyra1 scaffold_2485 ensembl transcript 1943 2907 . - . ID=Phyra87723;Parent=Phyra87723;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2485 . CDS 1943 2100 . - 0 ID=Phyra87723;Parent=Phyra87723;rank=3 scaffold_2485 . exon 1943 2100 . - . ID=Phyra87723.3;Parent=Phyra87723;constitutive=1;ensembl_phase=1;rank=3 scaffold_2485 . CDS 2238 2718 . - 0 ID=Phyra87723;Parent=Phyra87723;rank=2 scaffold_2485 . exon 2238 2718 . - . ID=Phyra87723.2;Parent=Phyra87723;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2485 . CDS 2755 2907 . - 0 ID=Phyra87723;Parent=Phyra87723;rank=1 scaffold_2485 . exon 2755 2907 . - . ID=Phyra87723.1;Parent=Phyra87723;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2684 1 2939 scaffold_2684 . repeat_region 183 225 . ? . description=trf scaffold_2684 . repeat_region 333 367 . ? . description=trf scaffold_2684 . repeat_region 1235 2133 . ? . description=dust scaffold_2684 . biological_region 2354 2358 0.999 - . logic_name=eponine scaffold_2684 ensembl protein_coding_gene 396 2838 . - . ID=Phyra87790;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2684000001;logic_name=jgi_phyra1 scaffold_2684 ensembl transcript 396 2838 . - . ID=Phyra87790;Parent=Phyra87790;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2684 . CDS 396 884 . - 0 ID=Phyra87790;Parent=Phyra87790;rank=2 scaffold_2684 . exon 396 884 . - . ID=Phyra87790.2;Parent=Phyra87790;constitutive=1;rank=2 scaffold_2684 . CDS 2236 2838 . - 0 ID=Phyra87790;Parent=Phyra87790;rank=1 scaffold_2684 . exon 2236 2838 . - . ID=Phyra87790.1;Parent=Phyra87790;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2681 1 2948 scaffold_2681 . biological_region 2280 2287 0.999 + . logic_name=eponine scaffold_2681 ensembl protein_coding_gene 1285 2919 . - . ID=Phyra87789;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2681000001;logic_name=jgi_phyra1 scaffold_2681 ensembl transcript 1285 2919 . - . ID=Phyra87789;Parent=Phyra87789;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2681 . CDS 1285 2919 . - 0 ID=Phyra87789;Parent=Phyra87789;rank=1 scaffold_2681 . exon 1285 2919 . - . ID=Phyra87789.1;Parent=Phyra87789;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2527 1 2963 scaffold_2527 . biological_region 694 698 0.999 - . logic_name=eponine scaffold_2527 . biological_region 940 941 0.999 + . logic_name=eponine scaffold_2527 . biological_region 1980 1982 0.999 - . logic_name=eponine scaffold_2527 . repeat_region 2732 2911 . + . description=(TCG)n scaffold_2527 . repeat_region 2738 2796 . ? . description=trf scaffold_2527 . repeat_region 2782 2835 . ? . description=trf scaffold_2527 . repeat_region 2785 2844 . ? . description=dust scaffold_2527 . biological_region 2805 2810 0.999 + . logic_name=eponine scaffold_2527 . repeat_region 2824 2908 . ? . description=trf scaffold_2527 . repeat_region 2869 2911 . ? . description=trf scaffold_2527 . biological_region 2870 2874 0.999 - . logic_name=eponine scaffold_2527 ensembl protein_coding_gene 114 1028 . + . ID=Phyra87740;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2527000001;logic_name=jgi_phyra1 scaffold_2527 ensembl transcript 114 1028 . + . ID=Phyra87740;Parent=Phyra87740;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2527 . CDS 114 1028 . + 0 ID=Phyra87740;Parent=Phyra87740;rank=1 scaffold_2527 . exon 114 1028 . + . ID=Phyra87740.1;Parent=Phyra87740;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2680 1 2963 scaffold_2680 . repeat_region 1542 1589 . ? . description=trf scaffold_2680 ensembl protein_coding_gene 1358 1714 . - . ID=Phyra87788;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2680000001;logic_name=jgi_phyra1 scaffold_2680 ensembl transcript 1358 1714 . - . ID=Phyra87788;Parent=Phyra87788;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2680 . CDS 1358 1714 . - 0 ID=Phyra87788;Parent=Phyra87788;rank=1 scaffold_2680 . exon 1358 1714 . - . ID=Phyra87788.1;Parent=Phyra87788;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2679 1 2972 ##gff-version 3 ##sequence-region scaffold_2682 1 2974 scaffold_2682 . repeat_region 1134 1810 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2677 1 2999 scaffold_2677 . repeat_region 920 1772 . ? . description=dust scaffold_2677 ensembl protein_coding_gene 12 2951 . - . ID=Phyra87787;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2677000001;logic_name=jgi_phyra1 scaffold_2677 ensembl transcript 12 2951 . - . ID=Phyra87787;Parent=Phyra87787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2677 . CDS 12 909 . - 0 ID=Phyra87787;Parent=Phyra87787;rank=2 scaffold_2677 . exon 12 909 . - . ID=Phyra87787.2;Parent=Phyra87787;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2677 . CDS 1803 2951 . - 0 ID=Phyra87787;Parent=Phyra87787;rank=1 scaffold_2677 . exon 1803 2951 . - . ID=Phyra87787.1;Parent=Phyra87787;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2676 1 3007 scaffold_2676 ensembl protein_coding_gene 142 1145 . + . ID=Phyra87786;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2676000001;logic_name=jgi_phyra1 scaffold_2676 ensembl transcript 142 1145 . + . ID=Phyra87786;Parent=Phyra87786;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2676 . CDS 142 500 . + 0 ID=Phyra87786;Parent=Phyra87786;rank=1 scaffold_2676 . exon 142 500 . + . ID=Phyra87786.1;Parent=Phyra87786;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2676 . CDS 562 656 . + 0 ID=Phyra87786;Parent=Phyra87786;rank=2 scaffold_2676 . exon 562 656 . + . ID=Phyra87786.2;Parent=Phyra87786;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2676 . CDS 730 1145 . + 0 ID=Phyra87786;Parent=Phyra87786;rank=3 scaffold_2676 . exon 730 1145 . + . ID=Phyra87786.3;Parent=Phyra87786;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_2674 1 3010 scaffold_2674 . biological_region 283 285 0.999 - . logic_name=eponine scaffold_2674 ensembl protein_coding_gene 83 457 . + . ID=Phyra87782;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2674000001;logic_name=jgi_phyra1 scaffold_2674 ensembl transcript 83 457 . + . ID=Phyra87782;Parent=Phyra87782;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2674 . CDS 83 457 . + 0 ID=Phyra87782;Parent=Phyra87782;rank=1 scaffold_2674 . exon 83 457 . + . ID=Phyra87782.1;Parent=Phyra87782;constitutive=1;rank=1 scaffold_2674 ensembl protein_coding_gene 616 1227 . - . ID=Phyra87783;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2674000002;logic_name=jgi_phyra1 scaffold_2674 ensembl transcript 616 1227 . - . ID=Phyra87783;Parent=Phyra87783;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2674 . CDS 616 956 . - 0 ID=Phyra87783;Parent=Phyra87783;rank=2 scaffold_2674 . exon 616 956 . - . ID=Phyra87783.2;Parent=Phyra87783;constitutive=1;ensembl_phase=1;rank=2 scaffold_2674 . CDS 1023 1227 . - 0 ID=Phyra87783;Parent=Phyra87783;rank=1 scaffold_2674 . exon 1023 1227 . - . ID=Phyra87783.1;Parent=Phyra87783;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2675 1 3014 scaffold_2675 . biological_region 461 463 0.999 - . logic_name=eponine scaffold_2675 . biological_region 569 574 0.999 - . logic_name=eponine scaffold_2675 . biological_region 663 665 0.999 - . logic_name=eponine scaffold_2675 . biological_region 2596 2598 0.999 - . logic_name=eponine scaffold_2675 . biological_region 2835 2837 0.999 + . logic_name=eponine scaffold_2675 ensembl protein_coding_gene 167 715 . + . ID=Phyra87784;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2675000001;logic_name=jgi_phyra1 scaffold_2675 ensembl transcript 167 715 . + . ID=Phyra87784;Parent=Phyra87784;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2675 . CDS 167 715 . + 0 ID=Phyra87784;Parent=Phyra87784;rank=1 scaffold_2675 . exon 167 715 . + . ID=Phyra87784.1;Parent=Phyra87784;constitutive=1;rank=1 scaffold_2675 ensembl protein_coding_gene 1601 2679 . - . ID=Phyra87785;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2675000002;logic_name=jgi_phyra1 scaffold_2675 ensembl transcript 1601 2679 . - . ID=Phyra87785;Parent=Phyra87785;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2675 . CDS 1601 1647 . - 0 ID=Phyra87785;Parent=Phyra87785;rank=3 scaffold_2675 . exon 1601 1647 . - . ID=Phyra87785.3;Parent=Phyra87785;constitutive=1;ensembl_phase=1;rank=3 scaffold_2675 . CDS 1833 2238 . - 0 ID=Phyra87785;Parent=Phyra87785;rank=2 scaffold_2675 . exon 1833 2238 . - . ID=Phyra87785.2;Parent=Phyra87785;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2675 . CDS 2320 2679 . - 0 ID=Phyra87785;Parent=Phyra87785;rank=1 scaffold_2675 . exon 2320 2679 . - . ID=Phyra87785.1;Parent=Phyra87785;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2277 1 3020 scaffold_2277 ensembl protein_coding_gene 2148 2866 . - . ID=Phyra87627;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2277000001;logic_name=jgi_phyra1 scaffold_2277 ensembl transcript 2148 2866 . - . ID=Phyra87627;Parent=Phyra87627;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2277 . CDS 2148 2539 . - 0 ID=Phyra87627;Parent=Phyra87627;rank=2 scaffold_2277 . exon 2148 2539 . - . ID=Phyra87627.2;Parent=Phyra87627;constitutive=1;ensembl_phase=1;rank=2 scaffold_2277 . CDS 2821 2866 . - 0 ID=Phyra87627;Parent=Phyra87627;rank=1 scaffold_2277 . exon 2821 2866 . - . ID=Phyra87627.1;Parent=Phyra87627;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2673 1 3022 scaffold_2673 . repeat_region 116 416 . + . description=GypsyPi-1c_LTR scaffold_2673 . repeat_region 574 588 . ? . description=dust scaffold_2673 . repeat_region 851 858 . ? . description=dust scaffold_2673 . repeat_region 1120 1172 . ? . description=trf scaffold_2673 . repeat_region 1440 1497 . ? . description=trf scaffold_2673 . repeat_region 1440 1507 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2672 1 3035 scaffold_2672 ensembl protein_coding_gene 357 2612 . + . ID=Phyra87781;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2672000001;logic_name=jgi_phyra1 scaffold_2672 ensembl transcript 357 2612 . + . ID=Phyra87781;Parent=Phyra87781;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2672 . CDS 357 2612 . + 0 ID=Phyra87781;Parent=Phyra87781;rank=1 scaffold_2672 . exon 357 2612 . + . ID=Phyra87781.1;Parent=Phyra87781;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2671 1 3047 scaffold_2671 ensembl protein_coding_gene 884 1683 . - . ID=Phyra87780;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2671000001;logic_name=jgi_phyra1 scaffold_2671 ensembl transcript 884 1683 . - . ID=Phyra87780;Parent=Phyra87780;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2671 . CDS 884 1413 . - 0 ID=Phyra87780;Parent=Phyra87780;rank=2 scaffold_2671 . exon 884 1413 . - . ID=Phyra87780.2;Parent=Phyra87780;constitutive=1;ensembl_phase=1;rank=2 scaffold_2671 . CDS 1485 1683 . - 0 ID=Phyra87780;Parent=Phyra87780;rank=1 scaffold_2671 . exon 1485 1683 . - . ID=Phyra87780.1;Parent=Phyra87780;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2670 1 3056 scaffold_2670 . biological_region 1316 1318 0.999 - . logic_name=eponine scaffold_2670 . biological_region 2571 2574 0.999 + . logic_name=eponine scaffold_2670 ensembl protein_coding_gene 121 1407 . + . ID=Phyra87778;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2670000001;logic_name=jgi_phyra1 scaffold_2670 ensembl transcript 121 1407 . + . ID=Phyra87778;Parent=Phyra87778;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2670 . CDS 121 1407 . + 0 ID=Phyra87778;Parent=Phyra87778;rank=1 scaffold_2670 . exon 121 1407 . + . ID=Phyra87778.1;Parent=Phyra87778;constitutive=1;rank=1 scaffold_2670 ensembl protein_coding_gene 1516 2599 . - . ID=Phyra87779;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2670000002;logic_name=jgi_phyra1 scaffold_2670 ensembl transcript 1516 2599 . - . ID=Phyra87779;Parent=Phyra87779;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2670 . CDS 1516 2263 . - 0 ID=Phyra87779;Parent=Phyra87779;rank=2 scaffold_2670 . exon 1516 2263 . - . ID=Phyra87779.2;Parent=Phyra87779;constitutive=1;ensembl_phase=2;rank=2 scaffold_2670 . CDS 2373 2599 . - 0 ID=Phyra87779;Parent=Phyra87779;rank=1 scaffold_2670 . exon 2373 2599 . - . ID=Phyra87779.1;Parent=Phyra87779;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2248 1 3061 scaffold_2248 ensembl protein_coding_gene 599 1543 . - . ID=Phyra87605;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2248000001;logic_name=jgi_phyra1 scaffold_2248 ensembl transcript 599 1543 . - . ID=Phyra87605;Parent=Phyra87605;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2248 . CDS 599 976 . - 0 ID=Phyra87605;Parent=Phyra87605;rank=2 scaffold_2248 . exon 599 976 . - . ID=Phyra87605.2;Parent=Phyra87605;constitutive=1;rank=2 scaffold_2248 . CDS 1040 1543 . - 0 ID=Phyra87605;Parent=Phyra87605;rank=1 scaffold_2248 . exon 1040 1543 . - . ID=Phyra87605.1;Parent=Phyra87605;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2678 1 3066 scaffold_2678 . repeat_region 833 1779 . ? . description=dust scaffold_2678 . repeat_region 2993 3003 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2668 1 3075 scaffold_2668 . biological_region 557 560 0.999 + . logic_name=eponine scaffold_2668 ensembl protein_coding_gene 248 1711 . - . ID=Phyra87776;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2668000001;logic_name=jgi_phyra1 scaffold_2668 ensembl transcript 248 1711 . - . ID=Phyra87776;Parent=Phyra87776;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2668 . CDS 248 1711 . - 0 ID=Phyra87776;Parent=Phyra87776;rank=1 scaffold_2668 . exon 248 1711 . - . ID=Phyra87776.1;Parent=Phyra87776;constitutive=1;rank=1 scaffold_2668 ensembl protein_coding_gene 2343 2663 . - . ID=Phyra87777;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2668000002;logic_name=jgi_phyra1 scaffold_2668 ensembl transcript 2343 2663 . - . ID=Phyra87777;Parent=Phyra87777;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2668 . CDS 2343 2663 . - 0 ID=Phyra87777;Parent=Phyra87777;rank=1 scaffold_2668 . exon 2343 2663 . - . ID=Phyra87777.1;Parent=Phyra87777;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1668 1 3096 scaffold_1668 . repeat_region 1738 1787 . ? . description=dust scaffold_1668 . biological_region 1948 1949 0.999 - . logic_name=eponine scaffold_1668 . biological_region 2109 2112 0.999 + . logic_name=eponine scaffold_1668 . repeat_region 2645 2918 . - . description=GypsyPi-1c_I-int scaffold_1668 ensembl protein_coding_gene 1905 2060 . - . ID=Phyra42761;biotype=protein_coding;external_name=gwEuk.1668.1.1;logic_name=jgi_phyra1 scaffold_1668 ensembl transcript 1905 2060 . - . ID=Phyra42761;Parent=Phyra42761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1668 . CDS 1905 2060 . - 0 ID=Phyra42761;Parent=Phyra42761;rank=1 scaffold_1668 . exon 1905 2060 . - . ID=Phyra42761.1;Parent=Phyra42761;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2658 1 3099 scaffold_2658 . repeat_region 430 476 . ? . description=dust scaffold_2658 . repeat_region 432 478 . ? . description=trf scaffold_2658 . repeat_region 554 590 . ? . description=trf scaffold_2658 . repeat_region 556 650 . ? . description=dust scaffold_2658 . repeat_region 556 700 . + . description=(ATG)n scaffold_2658 . repeat_region 559 656 . ? . description=trf scaffold_2658 . repeat_region 601 629 . ? . description=trf scaffold_2658 . repeat_region 601 650 . ? . description=trf scaffold_2658 . repeat_region 607 700 . ? . description=trf scaffold_2658 ensembl protein_coding_gene 106 723 . + . ID=Phyra87774;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2658000001;logic_name=jgi_phyra1 scaffold_2658 ensembl transcript 106 723 . + . ID=Phyra87774;Parent=Phyra87774;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2658 . CDS 106 111 . + 0 ID=Phyra87774;Parent=Phyra87774;rank=1 scaffold_2658 . exon 106 111 . + . ID=Phyra87774.1;Parent=Phyra87774;constitutive=1;rank=1 scaffold_2658 . CDS 259 723 . + 0 ID=Phyra87774;Parent=Phyra87774;rank=2 scaffold_2658 . exon 259 723 . + . ID=Phyra87774.2;Parent=Phyra87774;constitutive=1;rank=2 scaffold_2658 ensembl protein_coding_gene 1113 2065 . - . ID=Phyra87775;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2658000002;logic_name=jgi_phyra1 scaffold_2658 ensembl transcript 1113 2065 . - . ID=Phyra87775;Parent=Phyra87775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2658 . CDS 1113 1223 . - 0 ID=Phyra87775;Parent=Phyra87775;rank=5 scaffold_2658 . exon 1113 1223 . - . ID=Phyra87775.5;Parent=Phyra87775;constitutive=1;rank=5 scaffold_2658 . CDS 1293 1406 . - 0 ID=Phyra87775;Parent=Phyra87775;rank=4 scaffold_2658 . exon 1293 1406 . - . ID=Phyra87775.4;Parent=Phyra87775;constitutive=1;rank=4 scaffold_2658 . CDS 1471 1610 . - 0 ID=Phyra87775;Parent=Phyra87775;rank=3 scaffold_2658 . exon 1471 1610 . - . ID=Phyra87775.3;Parent=Phyra87775;constitutive=1;ensembl_phase=1;rank=3 scaffold_2658 . CDS 1683 1941 . - 0 ID=Phyra87775;Parent=Phyra87775;rank=2 scaffold_2658 . exon 1683 1941 . - . ID=Phyra87775.2;Parent=Phyra87775;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2658 . CDS 2021 2065 . - 0 ID=Phyra87775;Parent=Phyra87775;rank=1 scaffold_2658 . exon 2021 2065 . - . ID=Phyra87775.1;Parent=Phyra87775;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2657 1 3102 scaffold_2657 ensembl protein_coding_gene 14 1823 . - . ID=Phyra87773;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2657000001;logic_name=jgi_phyra1 scaffold_2657 ensembl transcript 14 1823 . - . ID=Phyra87773;Parent=Phyra87773;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2657 . CDS 14 1823 . - 0 ID=Phyra87773;Parent=Phyra87773;rank=1 scaffold_2657 . exon 14 1823 . - . ID=Phyra87773.1;Parent=Phyra87773;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2654 1 3110 scaffold_2654 . repeat_region 529 567 . ? . description=trf scaffold_2654 . repeat_region 1381 1404 . ? . description=trf scaffold_2654 ensembl protein_coding_gene 1430 2612 . + . ID=Phyra87772;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2654000001;logic_name=jgi_phyra1 scaffold_2654 ensembl transcript 1430 2612 . + . ID=Phyra87772;Parent=Phyra87772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2654 . CDS 1430 1495 . + 0 ID=Phyra87772;Parent=Phyra87772;rank=1 scaffold_2654 . exon 1430 1495 . + . ID=Phyra87772.1;Parent=Phyra87772;constitutive=1;rank=1 scaffold_2654 . CDS 1566 1659 . + 0 ID=Phyra87772;Parent=Phyra87772;rank=2 scaffold_2654 . exon 1566 1659 . + . ID=Phyra87772.2;Parent=Phyra87772;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2654 . CDS 1717 2612 . + 0 ID=Phyra87772;Parent=Phyra87772;rank=3 scaffold_2654 . exon 1717 2612 . + . ID=Phyra87772.3;Parent=Phyra87772;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_2344 1 3117 scaffold_2344 . repeat_region 901 947 . ? . description=trf scaffold_2344 . repeat_region 937 990 . ? . description=trf scaffold_2344 . repeat_region 1491 1511 . ? . description=dust scaffold_2344 . repeat_region 2089 2236 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2491 1 3120 scaffold_2491 . repeat_region 21 595 . + . description=GypsyPi-1c_I-int scaffold_2491 . repeat_region 979 1200 . + . description=GypsyPi-1c_I-int scaffold_2491 . repeat_region 1453 1465 . ? . description=dust scaffold_2491 . biological_region 2155 2158 0.999 + . logic_name=eponine scaffold_2491 . biological_region 2340 2341 0.999 + . logic_name=eponine scaffold_2491 ensembl protein_coding_gene 289 477 . + . ID=Phyra45531;biotype=protein_coding;external_name=gwEuk.2491.2.1;logic_name=jgi_phyra1 scaffold_2491 ensembl transcript 289 477 . + . ID=Phyra45531;Parent=Phyra45531;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2491 . CDS 289 477 . + 0 ID=Phyra45531;Parent=Phyra45531;rank=1 scaffold_2491 . exon 289 477 . + . ID=Phyra45531.1;Parent=Phyra45531;constitutive=1;rank=1 scaffold_2491 ensembl protein_coding_gene 1217 2817 . - . ID=Phyra87727;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2491000001;logic_name=jgi_phyra1 scaffold_2491 ensembl transcript 1217 2817 . - . ID=Phyra87727;Parent=Phyra87727;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2491 . CDS 1217 1414 . - 0 ID=Phyra87727;Parent=Phyra87727;rank=4 scaffold_2491 . exon 1217 1414 . - . ID=Phyra87727.4;Parent=Phyra87727;constitutive=1;rank=4 scaffold_2491 . CDS 1480 1607 . - 0 ID=Phyra87727;Parent=Phyra87727;rank=3 scaffold_2491 . exon 1480 1607 . - . ID=Phyra87727.3;Parent=Phyra87727;constitutive=1;ensembl_phase=1;rank=3 scaffold_2491 . CDS 1644 1841 . - 0 ID=Phyra87727;Parent=Phyra87727;rank=2 scaffold_2491 . exon 1644 1841 . - . ID=Phyra87727.2;Parent=Phyra87727;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2491 . CDS 1866 2817 . - 0 ID=Phyra87727;Parent=Phyra87727;rank=1 scaffold_2491 . exon 1866 2817 . - . ID=Phyra87727.1;Parent=Phyra87727;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2647 1 3120 scaffold_2647 . repeat_region 841 956 . ? . description=dust scaffold_2647 . biological_region 1005 1006 0.999 + . logic_name=eponine scaffold_2647 . biological_region 1389 1390 0.999 + . logic_name=eponine scaffold_2647 . biological_region 1750 1752 0.999 + . logic_name=eponine scaffold_2647 . biological_region 2300 2302 0.999 - . logic_name=eponine scaffold_2647 . biological_region 2355 2358 0.999 + . logic_name=eponine scaffold_2647 ensembl protein_coding_gene 440 3120 . - . ID=Phyra87771;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2647000001;logic_name=jgi_phyra1 scaffold_2647 ensembl transcript 440 3120 . - . ID=Phyra87771;Parent=Phyra87771;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2647 . CDS 440 831 . - 0 ID=Phyra87771;Parent=Phyra87771;rank=3 scaffold_2647 . exon 440 831 . - . ID=Phyra87771.3;Parent=Phyra87771;constitutive=1;ensembl_phase=1;rank=3 scaffold_2647 . CDS 1103 2053 . - 0 ID=Phyra87771;Parent=Phyra87771;rank=2 scaffold_2647 . exon 1103 2053 . - . ID=Phyra87771.2;Parent=Phyra87771;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2647 . CDS 2121 3120 . - 0 ID=Phyra87771;Parent=Phyra87771;rank=1 scaffold_2647 . exon 2121 3120 . - . ID=Phyra87771.1;Parent=Phyra87771;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2031 1 3123 scaffold_2031 . repeat_region 419 2642 . - . description=GypsyPi-1c_I-int scaffold_2031 ensembl protein_coding_gene 1591 2966 . - . ID=Phyra87471;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2031000001;logic_name=jgi_phyra1 scaffold_2031 ensembl transcript 1591 2966 . - . ID=Phyra87471;Parent=Phyra87471;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2031 . CDS 1591 1629 . - 0 ID=Phyra87471;Parent=Phyra87471;rank=4 scaffold_2031 . exon 1591 1629 . - . ID=Phyra87471.4;Parent=Phyra87471;constitutive=1;rank=4 scaffold_2031 . CDS 1688 1885 . - 0 ID=Phyra87471;Parent=Phyra87471;rank=3 scaffold_2031 . exon 1688 1885 . - . ID=Phyra87471.3;Parent=Phyra87471;constitutive=1;rank=3 scaffold_2031 . CDS 1962 2225 . - 0 ID=Phyra87471;Parent=Phyra87471;rank=2 scaffold_2031 . exon 1962 2225 . - . ID=Phyra87471.2;Parent=Phyra87471;constitutive=1;rank=2 scaffold_2031 . CDS 2274 2966 . - 0 ID=Phyra87471;Parent=Phyra87471;rank=1 scaffold_2031 . exon 2274 2966 . - . ID=Phyra87471.1;Parent=Phyra87471;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2646 1 3125 scaffold_2646 . repeat_region 1299 2281 . ? . description=dust scaffold_2646 ensembl protein_coding_gene 2572 3087 . + . ID=Phyra87770;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2646000001;logic_name=jgi_phyra1 scaffold_2646 ensembl transcript 2572 3087 . + . ID=Phyra87770;Parent=Phyra87770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2646 . CDS 2572 3087 . + 0 ID=Phyra87770;Parent=Phyra87770;rank=1 scaffold_2646 . exon 2572 3087 . + . ID=Phyra87770.1;Parent=Phyra87770;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2645 1 3129 scaffold_2645 . repeat_region 1457 2262 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1897 1 3135 scaffold_1897 . repeat_region 1028 1708 . ? . description=dust scaffold_1897 ensembl protein_coding_gene 2863 3135 . + . ID=Phyra43459;biotype=protein_coding;external_name=gwEuk.1897.3.1;logic_name=jgi_phyra1 scaffold_1897 ensembl transcript 2863 3135 . + . ID=Phyra43459;Parent=Phyra43459;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1897 . CDS 2863 3135 . + 0 ID=Phyra43459;Parent=Phyra43459;rank=1 scaffold_1897 . exon 2863 3135 . + . ID=Phyra43459.1;Parent=Phyra43459;constitutive=1;rank=1 scaffold_1897 ensembl protein_coding_gene 380 2863 . + . ID=Phyra87372;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1897000001;logic_name=jgi_phyra1 scaffold_1897 ensembl transcript 380 2863 . + . ID=Phyra87372;Parent=Phyra87372;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1897 . CDS 380 968 . + 0 ID=Phyra87372;Parent=Phyra87372;rank=1 scaffold_1897 . exon 380 968 . + . ID=Phyra87372.1;Parent=Phyra87372;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1897 . CDS 1758 2863 . + 0 ID=Phyra87372;Parent=Phyra87372;rank=2 scaffold_1897 . exon 1758 2863 . + . ID=Phyra87372.2;Parent=Phyra87372;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2638 1 3136 scaffold_2638 . repeat_region 14 227 . - . description=GypsyPi-1c_I-int scaffold_2638 . repeat_region 482 1010 . - . description=GypsyPi-1c_I-int scaffold_2638 . repeat_region 1017 1934 . ? . description=dust scaffold_2638 . repeat_region 1937 3135 . - . description=GypsyPi-1c_I-int scaffold_2638 ensembl protein_coding_gene 2079 3072 . - . ID=Phyra87769;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2638000001;logic_name=jgi_phyra1 scaffold_2638 ensembl transcript 2079 3072 . - . ID=Phyra87769;Parent=Phyra87769;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2638 . CDS 2079 2117 . - 0 ID=Phyra87769;Parent=Phyra87769;rank=2 scaffold_2638 . exon 2079 2117 . - . ID=Phyra87769.2;Parent=Phyra87769;constitutive=1;rank=2 scaffold_2638 . CDS 2176 3072 . - 0 ID=Phyra87769;Parent=Phyra87769;rank=1 scaffold_2638 . exon 2176 3072 . - . ID=Phyra87769.1;Parent=Phyra87769;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2431 1 3140 scaffold_2431 . repeat_region 1516 1536 . ? . description=trf scaffold_2431 . repeat_region 1516 1536 . ? . description=dust scaffold_2431 . repeat_region 3054 3061 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2632 1 3143 scaffold_2632 . repeat_region 638 1746 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2630 1 3145 scaffold_2630 ensembl protein_coding_gene 14 783 . - . ID=Phyra87767;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2630000001;logic_name=jgi_phyra1 scaffold_2630 ensembl transcript 14 783 . - . ID=Phyra87767;Parent=Phyra87767;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2630 . CDS 14 297 . - 0 ID=Phyra87767;Parent=Phyra87767;rank=3 scaffold_2630 . exon 14 297 . - . ID=Phyra87767.3;Parent=Phyra87767;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2630 . CDS 318 521 . - 0 ID=Phyra87767;Parent=Phyra87767;rank=2 scaffold_2630 . exon 318 521 . - . ID=Phyra87767.2;Parent=Phyra87767;constitutive=1;rank=2 scaffold_2630 . CDS 592 783 . - 0 ID=Phyra87767;Parent=Phyra87767;rank=1 scaffold_2630 . exon 592 783 . - . ID=Phyra87767.1;Parent=Phyra87767;constitutive=1;rank=1 scaffold_2630 ensembl protein_coding_gene 1712 2600 . - . ID=Phyra87768;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2630000002;logic_name=jgi_phyra1 scaffold_2630 ensembl transcript 1712 2600 . - . ID=Phyra87768;Parent=Phyra87768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2630 . CDS 1712 1741 . - 0 ID=Phyra87768;Parent=Phyra87768;rank=3 scaffold_2630 . exon 1712 1741 . - . ID=Phyra87768.3;Parent=Phyra87768;constitutive=1;rank=3 scaffold_2630 . CDS 1864 2145 . - 0 ID=Phyra87768;Parent=Phyra87768;rank=2 scaffold_2630 . exon 1864 2145 . - . ID=Phyra87768.2;Parent=Phyra87768;constitutive=1;rank=2 scaffold_2630 . CDS 2238 2600 . - 0 ID=Phyra87768;Parent=Phyra87768;rank=1 scaffold_2630 . exon 2238 2600 . - . ID=Phyra87768.1;Parent=Phyra87768;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2625 1 3151 scaffold_2625 . biological_region 370 374 0.999 - . logic_name=eponine scaffold_2625 . biological_region 972 973 0.999 + . logic_name=eponine scaffold_2625 . repeat_region 1345 1385 . ? . description=dust scaffold_2625 ensembl protein_coding_gene 79 1361 . - . ID=Phyra87762;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2625000001;logic_name=jgi_phyra1 scaffold_2625 ensembl transcript 79 1361 . - . ID=Phyra87762;Parent=Phyra87762;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2625 . CDS 79 1361 . - 0 ID=Phyra87762;Parent=Phyra87762;rank=1 scaffold_2625 . exon 79 1361 . - . ID=Phyra87762.1;Parent=Phyra87762;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2619 1 3160 scaffold_2619 . biological_region 48 49 0.999 + . logic_name=eponine scaffold_2619 . biological_region 99 101 0.999 - . logic_name=eponine scaffold_2619 . biological_region 228 231 0.999 - . logic_name=eponine scaffold_2619 . biological_region 405 406 0.999 - . logic_name=eponine scaffold_2619 . biological_region 1106 1109 0.999 - . logic_name=eponine scaffold_2619 . repeat_region 1321 2294 . ? . description=dust scaffold_2619 . repeat_region 2322 2369 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2615 1 3163 scaffold_2615 . repeat_region 940 1879 . ? . description=dust scaffold_2615 . repeat_region 2504 2546 . ? . description=trf scaffold_2615 . repeat_region 2645 2691 . ? . description=trf scaffold_2615 ensembl protein_coding_gene 12 2350 . - . ID=Phyra87760;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2615000001;logic_name=jgi_phyra1 scaffold_2615 ensembl transcript 12 2350 . - . ID=Phyra87760;Parent=Phyra87760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2615 . CDS 12 908 . - 0 ID=Phyra87760;Parent=Phyra87760;rank=2 scaffold_2615 . exon 12 908 . - . ID=Phyra87760.2;Parent=Phyra87760;constitutive=1;rank=2 scaffold_2615 . CDS 1883 2350 . - 0 ID=Phyra87760;Parent=Phyra87760;rank=1 scaffold_2615 . exon 1883 2350 . - . ID=Phyra87760.1;Parent=Phyra87760;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2626 1 3164 scaffold_2626 . biological_region 1781 1785 0.999 + . logic_name=eponine scaffold_2626 . biological_region 2730 2732 0.999 - . logic_name=eponine scaffold_2626 ensembl protein_coding_gene 287 805 . + . ID=Phyra87763;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2626000001;logic_name=jgi_phyra1 scaffold_2626 ensembl transcript 287 805 . + . ID=Phyra87763;Parent=Phyra87763;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2626 . CDS 287 805 . + 0 ID=Phyra87763;Parent=Phyra87763;rank=1 scaffold_2626 . exon 287 805 . + . ID=Phyra87763.1;Parent=Phyra87763;constitutive=1;rank=1 scaffold_2626 ensembl protein_coding_gene 1813 2848 . + . ID=Phyra87764;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2626000002;logic_name=jgi_phyra1 scaffold_2626 ensembl transcript 1813 2848 . + . ID=Phyra87764;Parent=Phyra87764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2626 . CDS 1813 2323 . + 0 ID=Phyra87764;Parent=Phyra87764;rank=1 scaffold_2626 . exon 1813 2323 . + . ID=Phyra87764.1;Parent=Phyra87764;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2626 . CDS 2382 2848 . + 0 ID=Phyra87764;Parent=Phyra87764;rank=2 scaffold_2626 . exon 2382 2848 . + . ID=Phyra87764.2;Parent=Phyra87764;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2613 1 3170 scaffold_2613 . repeat_region 301 356 . ? . description=trf scaffold_2613 . repeat_region 984 1837 . ? . description=dust scaffold_2613 ensembl protein_coding_gene 447 914 . - . ID=Phyra87759;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2613000001;logic_name=jgi_phyra1 scaffold_2613 ensembl transcript 447 914 . - . ID=Phyra87759;Parent=Phyra87759;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2613 . CDS 447 914 . - 0 ID=Phyra87759;Parent=Phyra87759;rank=1 scaffold_2613 . exon 447 914 . - . ID=Phyra87759.1;Parent=Phyra87759;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2629 1 3174 scaffold_2629 . repeat_region 328 370 . ? . description=trf scaffold_2629 . repeat_region 1332 2103 . ? . description=dust scaffold_2629 . biological_region 2266 2268 0.999 - . logic_name=eponine scaffold_2629 . repeat_region 2515 2557 . ? . description=trf scaffold_2629 . repeat_region 2656 2702 . ? . description=trf scaffold_2629 ensembl protein_coding_gene 2157 2408 . - . ID=Phyra45958;biotype=protein_coding;external_name=gwEuk.2629.1.1;logic_name=jgi_phyra1 scaffold_2629 ensembl transcript 2157 2408 . - . ID=Phyra45958;Parent=Phyra45958;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2629 . CDS 2157 2408 . - 0 ID=Phyra45958;Parent=Phyra45958;rank=1 scaffold_2629 . exon 2157 2408 . - . ID=Phyra45958.1;Parent=Phyra45958;constitutive=1;rank=1 scaffold_2629 ensembl protein_coding_gene 421 1257 . - . ID=Phyra87765;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2629000001;logic_name=jgi_phyra1 scaffold_2629 ensembl transcript 421 1257 . - . ID=Phyra87765;Parent=Phyra87765;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2629 . CDS 421 1257 . - 0 ID=Phyra87765;Parent=Phyra87765;rank=1 scaffold_2629 . exon 421 1257 . - . ID=Phyra87765.1;Parent=Phyra87765;constitutive=1;rank=1 scaffold_2629 ensembl protein_coding_gene 2789 3170 . + . ID=Phyra87766;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2629000002;logic_name=jgi_phyra1 scaffold_2629 ensembl transcript 2789 3170 . + . ID=Phyra87766;Parent=Phyra87766;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2629 . CDS 2789 3170 . + 0 ID=Phyra87766;Parent=Phyra87766;rank=1 scaffold_2629 . exon 2789 3170 . + . ID=Phyra87766.1;Parent=Phyra87766;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2203 1 3175 scaffold_2203 . repeat_region 7 487 . + . description=GypsyPi-1c_I-int scaffold_2203 . repeat_region 805 1083 . + . description=GypsyPi-1c_I-int scaffold_2203 . biological_region 1157 1159 0.999 - . logic_name=eponine scaffold_2203 . biological_region 1199 1200 0.999 - . logic_name=eponine scaffold_2203 . repeat_region 1336 1352 . ? . description=dust scaffold_2203 . biological_region 2042 2044 0.999 + . logic_name=eponine scaffold_2203 . biological_region 2135 2135 0.999 - . logic_name=eponine scaffold_2203 . biological_region 2227 2229 0.999 + . logic_name=eponine scaffold_2203 ensembl protein_coding_gene 175 429 . + . ID=Phyra44863;biotype=protein_coding;external_name=gwEuk.2203.2.1;logic_name=jgi_phyra1 scaffold_2203 ensembl transcript 175 429 . + . ID=Phyra44863;Parent=Phyra44863;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2203 . CDS 175 429 . + 0 ID=Phyra44863;Parent=Phyra44863;rank=1 scaffold_2203 . exon 175 429 . + . ID=Phyra44863.1;Parent=Phyra44863;constitutive=1;rank=1 scaffold_2203 ensembl protein_coding_gene 1100 2704 . - . ID=Phyra87581;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2203000001;logic_name=jgi_phyra1 scaffold_2203 ensembl transcript 1100 2704 . - . ID=Phyra87581;Parent=Phyra87581;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2203 . CDS 1100 1266 . - 0 ID=Phyra87581;Parent=Phyra87581;rank=4 scaffold_2203 . exon 1100 1266 . - . ID=Phyra87581.4;Parent=Phyra87581;constitutive=1;ensembl_phase=1;rank=4 scaffold_2203 . CDS 1531 1728 . - 0 ID=Phyra87581;Parent=Phyra87581;rank=3 scaffold_2203 . exon 1531 1728 . - . ID=Phyra87581.3;Parent=Phyra87581;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2203 . CDS 1753 1770 . - 0 ID=Phyra87581;Parent=Phyra87581;rank=2 scaffold_2203 . exon 1753 1770 . - . ID=Phyra87581.2;Parent=Phyra87581;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2203 . CDS 1825 2704 . - 0 ID=Phyra87581;Parent=Phyra87581;rank=1 scaffold_2203 . exon 1825 2704 . - . ID=Phyra87581.1;Parent=Phyra87581;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2606 1 3179 scaffold_2606 ensembl protein_coding_gene 1 1310 . + . ID=Phyra87757;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2606000001;logic_name=jgi_phyra1 scaffold_2606 ensembl transcript 1 1310 . + . ID=Phyra87757;Parent=Phyra87757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2606 . exon 1 650 . + . ID=Phyra87757.1;Parent=Phyra87757;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2606 . CDS 3 650 . + 0 ID=Phyra87757;Parent=Phyra87757;rank=1 scaffold_2606 . CDS 722 843 . + 0 ID=Phyra87757;Parent=Phyra87757;rank=2 scaffold_2606 . exon 722 843 . + . ID=Phyra87757.2;Parent=Phyra87757;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2606 . CDS 916 1044 . + 0 ID=Phyra87757;Parent=Phyra87757;rank=3 scaffold_2606 . exon 916 1044 . + . ID=Phyra87757.3;Parent=Phyra87757;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_2606 . CDS 1124 1310 . + 0 ID=Phyra87757;Parent=Phyra87757;rank=4 scaffold_2606 . exon 1124 1310 . + . ID=Phyra87757.4;Parent=Phyra87757;constitutive=1;ensembl_phase=2;rank=4 scaffold_2606 ensembl protein_coding_gene 1482 2577 . + . ID=Phyra87758;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2606000002;logic_name=jgi_phyra1 scaffold_2606 ensembl transcript 1482 2577 . + . ID=Phyra87758;Parent=Phyra87758;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2606 . CDS 1482 1511 . + 0 ID=Phyra87758;Parent=Phyra87758;rank=1 scaffold_2606 . exon 1482 1511 . + . ID=Phyra87758.1;Parent=Phyra87758;constitutive=1;rank=1 scaffold_2606 . CDS 1572 1730 . + 0 ID=Phyra87758;Parent=Phyra87758;rank=2 scaffold_2606 . exon 1572 1730 . + . ID=Phyra87758.2;Parent=Phyra87758;constitutive=1;rank=2 scaffold_2606 . CDS 1816 2035 . + 0 ID=Phyra87758;Parent=Phyra87758;rank=3 scaffold_2606 . exon 1816 2035 . + . ID=Phyra87758.3;Parent=Phyra87758;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2606 . CDS 2130 2239 . + 0 ID=Phyra87758;Parent=Phyra87758;rank=4 scaffold_2606 . exon 2130 2239 . + . ID=Phyra87758.4;Parent=Phyra87758;constitutive=1;ensembl_phase=1;rank=4 scaffold_2606 . CDS 2536 2577 . + 0 ID=Phyra87758;Parent=Phyra87758;rank=5 scaffold_2606 . exon 2536 2577 . + . ID=Phyra87758.5;Parent=Phyra87758;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_2605 1 3180 scaffold_2605 . repeat_region 774 1723 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2604 1 3182 scaffold_2604 . repeat_region 1280 2153 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2607 1 3182 scaffold_2607 . repeat_region 1097 1485 . ? . description=dust scaffold_2607 . biological_region 1729 1729 0.999 - . logic_name=eponine scaffold_2607 . biological_region 2574 2578 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2595 1 3186 scaffold_2595 . repeat_region 273 309 . ? . description=trf scaffold_2595 . repeat_region 618 966 . ? . description=trf scaffold_2595 . repeat_region 641 831 . ? . description=dust scaffold_2595 . repeat_region 865 959 . ? . description=dust scaffold_2595 . biological_region 1245 1251 0.999 - . logic_name=eponine scaffold_2595 . biological_region 1263 1264 0.999 + . logic_name=eponine scaffold_2595 ensembl protein_coding_gene 60 584 . - . ID=Phyra87755;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2595000001;logic_name=jgi_phyra1 scaffold_2595 ensembl transcript 60 584 . - . ID=Phyra87755;Parent=Phyra87755;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2595 . CDS 60 584 . - 0 ID=Phyra87755;Parent=Phyra87755;rank=1 scaffold_2595 . exon 60 584 . - . ID=Phyra87755.1;Parent=Phyra87755;constitutive=1;rank=1 scaffold_2595 ensembl protein_coding_gene 998 3168 . + . ID=Phyra87756;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2595000002;logic_name=jgi_phyra1 scaffold_2595 ensembl transcript 998 3168 . + . ID=Phyra87756;Parent=Phyra87756;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2595 . CDS 998 3168 . + 0 ID=Phyra87756;Parent=Phyra87756;rank=1 scaffold_2595 . exon 998 3168 . + . ID=Phyra87756.1;Parent=Phyra87756;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2594 1 3188 scaffold_2594 . repeat_region 1 53 . ? . description=trf scaffold_2594 . repeat_region 829 1539 . ? . description=dust scaffold_2594 . repeat_region 2048 2087 . ? . description=trf scaffold_2594 . repeat_region 2048 2293 . ? . description=trf scaffold_2594 . repeat_region 2049 2111 . ? . description=dust scaffold_2594 . repeat_region 2127 2207 . ? . description=dust scaffold_2594 . repeat_region 2127 2233 . ? . description=trf scaffold_2594 . repeat_region 2232 2292 . ? . description=dust scaffold_2594 . repeat_region 2237 2274 . ? . description=trf scaffold_2594 . repeat_region 2449 2459 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2588 1 3194 scaffold_2588 . repeat_region 1919 1928 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2579 1 3195 scaffold_2579 . biological_region 191 194 0.999 + . logic_name=eponine scaffold_2579 . biological_region 1083 1083 0.999 + . logic_name=eponine scaffold_2579 . biological_region 1350 1353 0.999 - . logic_name=eponine scaffold_2579 . biological_region 2261 2263 0.999 - . logic_name=eponine scaffold_2579 . biological_region 2317 2319 0.999 + . logic_name=eponine scaffold_2579 . biological_region 2415 2418 0.999 - . logic_name=eponine scaffold_2579 ensembl protein_coding_gene 1099 3082 . + . ID=Phyra87754;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2579000001;logic_name=jgi_phyra1 scaffold_2579 ensembl transcript 1099 3082 . + . ID=Phyra87754;Parent=Phyra87754;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2579 . CDS 1099 3009 . + 0 ID=Phyra87754;Parent=Phyra87754;rank=1 scaffold_2579 . exon 1099 3009 . + . ID=Phyra87754.1;Parent=Phyra87754;constitutive=1;rank=1 scaffold_2579 . CDS 3065 3082 . + 0 ID=Phyra87754;Parent=Phyra87754;rank=2 scaffold_2579 . exon 3065 3082 . + . ID=Phyra87754.2;Parent=Phyra87754;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2218 1 3196 scaffold_2218 . repeat_region 470 506 . ? . description=trf scaffold_2218 . repeat_region 488 668 . ? . description=trf scaffold_2218 . repeat_region 569 838 . ? . description=trf scaffold_2218 . repeat_region 650 680 . ? . description=trf scaffold_2218 . repeat_region 741 777 . ? . description=trf scaffold_2218 . repeat_region 934 969 . ? . description=trf scaffold_2218 . biological_region 1524 1524 0.999 + . logic_name=eponine scaffold_2218 ensembl protein_coding_gene 1280 2104 . - . ID=Phyra87592;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2218000001;logic_name=jgi_phyra1 scaffold_2218 ensembl transcript 1280 2104 . - . ID=Phyra87592;Parent=Phyra87592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2218 . CDS 1280 2104 . - 0 ID=Phyra87592;Parent=Phyra87592;rank=1 scaffold_2218 . exon 1280 2104 . - . ID=Phyra87592.1;Parent=Phyra87592;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2553 1 3202 scaffold_2553 ensembl protein_coding_gene 617 1630 . + . ID=Phyra72550;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2553000001;logic_name=jgi_phyra1 scaffold_2553 ensembl transcript 617 1630 . + . ID=Phyra72550;Parent=Phyra72550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2553 . CDS 617 1630 . + 0 ID=Phyra72550;Parent=Phyra72550;rank=1 scaffold_2553 . exon 617 1630 . + . ID=Phyra72550.1;Parent=Phyra72550;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2575 1 3203 scaffold_2575 . biological_region 2830 2833 0.999 + . logic_name=eponine scaffold_2575 . biological_region 2965 2966 0.999 - . logic_name=eponine scaffold_2575 . biological_region 3049 3050 0.999 - . logic_name=eponine scaffold_2575 ensembl protein_coding_gene 35 2356 . + . ID=Phyra87752;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2575000001;logic_name=jgi_phyra1 scaffold_2575 ensembl transcript 35 2356 . + . ID=Phyra87752;Parent=Phyra87752;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2575 . CDS 35 2356 . + 0 ID=Phyra87752;Parent=Phyra87752;rank=1 scaffold_2575 . exon 35 2356 . + . ID=Phyra87752.1;Parent=Phyra87752;constitutive=1;rank=1 scaffold_2575 ensembl protein_coding_gene 2767 3177 . + . ID=Phyra87753;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2575000002;logic_name=jgi_phyra1 scaffold_2575 ensembl transcript 2767 3177 . + . ID=Phyra87753;Parent=Phyra87753;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2575 . CDS 2767 3177 . + 0 ID=Phyra87753;Parent=Phyra87753;rank=1 scaffold_2575 . exon 2767 3177 . + . ID=Phyra87753.1;Parent=Phyra87753;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2571 1 3204 scaffold_2571 . repeat_region 1002 1873 . ? . description=dust scaffold_2571 . biological_region 2637 2637 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2568 1 3209 scaffold_2568 . repeat_region 862 1047 . - . description=Gypsy-2-I_PI-int scaffold_2568 . repeat_region 1432 1475 . ? . description=trf scaffold_2568 ensembl protein_coding_gene 2512 2955 . + . ID=Phyra87751;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2568000001;logic_name=jgi_phyra1 scaffold_2568 ensembl transcript 2512 2955 . + . ID=Phyra87751;Parent=Phyra87751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2568 . CDS 2512 2955 . + 0 ID=Phyra87751;Parent=Phyra87751;rank=1 scaffold_2568 . exon 2512 2955 . + . ID=Phyra87751.1;Parent=Phyra87751;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2565 1 3212 scaffold_2565 . repeat_region 489 497 . ? . description=dust scaffold_2565 . repeat_region 966 2129 . ? . description=dust scaffold_2565 . biological_region 2904 2905 0.999 + . logic_name=eponine scaffold_2565 . biological_region 2995 2998 0.999 - . logic_name=eponine scaffold_2565 ensembl protein_coding_gene 2335 3053 . + . ID=Phyra87750;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2565000001;logic_name=jgi_phyra1 scaffold_2565 ensembl transcript 2335 3053 . + . ID=Phyra87750;Parent=Phyra87750;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2565 . CDS 2335 3053 . + 0 ID=Phyra87750;Parent=Phyra87750;rank=1 scaffold_2565 . exon 2335 3053 . + . ID=Phyra87750.1;Parent=Phyra87750;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2564 1 3213 scaffold_2564 . repeat_region 907 1642 . ? . description=dust scaffold_2564 ensembl protein_coding_gene 55 1826 . + . ID=Phyra87749;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2564000001;logic_name=jgi_phyra1 scaffold_2564 ensembl transcript 55 1826 . + . ID=Phyra87749;Parent=Phyra87749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2564 . CDS 55 904 . + 0 ID=Phyra87749;Parent=Phyra87749;rank=1 scaffold_2564 . exon 55 904 . + . ID=Phyra87749.1;Parent=Phyra87749;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2564 . CDS 1819 1826 . + 0 ID=Phyra87749;Parent=Phyra87749;rank=2 scaffold_2564 . exon 1819 1826 . + . ID=Phyra87749.2;Parent=Phyra87749;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2559 1 3214 scaffold_2559 . biological_region 419 423 0.999 + . logic_name=eponine scaffold_2559 . repeat_region 2171 2194 . ? . description=trf scaffold_2559 . repeat_region 2246 2280 . ? . description=trf scaffold_2559 ensembl protein_coding_gene 2015 2575 . + . ID=Phyra87748;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2559000001;logic_name=jgi_phyra1 scaffold_2559 ensembl transcript 2015 2575 . + . ID=Phyra87748;Parent=Phyra87748;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2559 . CDS 2015 2575 . + 0 ID=Phyra87748;Parent=Phyra87748;rank=1 scaffold_2559 . exon 2015 2575 . + . ID=Phyra87748.1;Parent=Phyra87748;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2549 1 3216 scaffold_2549 . biological_region 945 947 0.999 - . logic_name=eponine scaffold_2549 . biological_region 951 953 0.999 - . logic_name=eponine scaffold_2549 . repeat_region 1281 2331 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2554 1 3216 scaffold_2554 . repeat_region 65 1057 . - . description=GypsyPi-1c_I-int scaffold_2554 . repeat_region 1064 2239 . ? . description=dust scaffold_2554 ensembl protein_coding_gene 97 771 . - . ID=Phyra87747;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2554000001;logic_name=jgi_phyra1 scaffold_2554 ensembl transcript 97 771 . - . ID=Phyra87747;Parent=Phyra87747;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2554 . CDS 97 306 . - 0 ID=Phyra87747;Parent=Phyra87747;rank=2 scaffold_2554 . exon 97 306 . - . ID=Phyra87747.2;Parent=Phyra87747;constitutive=1;rank=2 scaffold_2554 . CDS 370 771 . - 0 ID=Phyra87747;Parent=Phyra87747;rank=1 scaffold_2554 . exon 370 771 . - . ID=Phyra87747.1;Parent=Phyra87747;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2548 1 3217 scaffold_2548 . biological_region 1023 1027 0.999 - . logic_name=eponine scaffold_2548 . repeat_region 1443 2459 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2550 1 3217 scaffold_2550 . biological_region 406 411 0.999 + . logic_name=eponine scaffold_2550 ensembl protein_coding_gene 633 2123 . + . ID=Phyra72549;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2550000001;logic_name=jgi_phyra1 scaffold_2550 ensembl transcript 633 2123 . + . ID=Phyra72549;Parent=Phyra72549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2550 . CDS 633 2123 . + 0 ID=Phyra72549;Parent=Phyra72549;rank=1 scaffold_2550 . exon 633 2123 . + . ID=Phyra72549.1;Parent=Phyra72549;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2545 1 3218 scaffold_2545 . repeat_region 1859 2089 . ? . description=dust scaffold_2545 . repeat_region 2137 2200 . ? . description=dust scaffold_2545 . repeat_region 2146 2202 . ? . description=trf scaffold_2545 . repeat_region 2490 2546 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2544 1 3220 scaffold_2544 . repeat_region 827 852 . ? . description=dust scaffold_2544 . repeat_region 1490 2227 . ? . description=dust scaffold_2544 . biological_region 2287 2289 0.999 + . logic_name=eponine scaffold_2544 . biological_region 2344 2349 0.999 + . logic_name=eponine scaffold_2544 . biological_region 2397 2400 0.999 - . logic_name=eponine scaffold_2544 . biological_region 2637 2641 0.999 + . logic_name=eponine scaffold_2544 . biological_region 2735 2736 0.999 - . logic_name=eponine scaffold_2544 . biological_region 2892 2893 0.999 - . logic_name=eponine scaffold_2544 ensembl protein_coding_gene 670 1363 . + . ID=Phyra87744;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2544000001;logic_name=jgi_phyra1 scaffold_2544 ensembl transcript 670 1363 . + . ID=Phyra87744;Parent=Phyra87744;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2544 . CDS 670 1310 . + 0 ID=Phyra87744;Parent=Phyra87744;rank=1 scaffold_2544 . exon 670 1310 . + . ID=Phyra87744.1;Parent=Phyra87744;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2544 . CDS 1354 1363 . + 0 ID=Phyra87744;Parent=Phyra87744;rank=2 scaffold_2544 . exon 1354 1363 . + . ID=Phyra87744.2;Parent=Phyra87744;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_2541 1 3221 scaffold_2541 . biological_region 338 339 0.999 + . logic_name=eponine scaffold_2541 . repeat_region 1435 2278 . ? . description=dust scaffold_2541 ensembl protein_coding_gene 869 2555 . + . ID=Phyra87742;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2541000001;logic_name=jgi_phyra1 scaffold_2541 ensembl transcript 869 2555 . + . ID=Phyra87742;Parent=Phyra87742;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2541 . CDS 869 1385 . + 0 ID=Phyra87742;Parent=Phyra87742;rank=1 scaffold_2541 . exon 869 1385 . + . ID=Phyra87742.1;Parent=Phyra87742;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2541 . CDS 2308 2555 . + 0 ID=Phyra87742;Parent=Phyra87742;rank=2 scaffold_2541 . exon 2308 2555 . + . ID=Phyra87742.2;Parent=Phyra87742;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2542 1 3221 scaffold_2542 . repeat_region 1221 2400 . ? . description=dust scaffold_2542 . biological_region 3028 3031 0.999 - . logic_name=eponine scaffold_2542 . biological_region 3085 3086 0.999 + . logic_name=eponine scaffold_2542 ensembl protein_coding_gene 268 3128 . + . ID=Phyra87743;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2542000001;logic_name=jgi_phyra1 scaffold_2542 ensembl transcript 268 3128 . + . ID=Phyra87743;Parent=Phyra87743;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2542 . CDS 268 396 . + 0 ID=Phyra87743;Parent=Phyra87743;rank=1 scaffold_2542 . exon 268 396 . + . ID=Phyra87743.1;Parent=Phyra87743;constitutive=1;rank=1 scaffold_2542 . CDS 457 1150 . + 0 ID=Phyra87743;Parent=Phyra87743;rank=2 scaffold_2542 . exon 457 1150 . + . ID=Phyra87743.2;Parent=Phyra87743;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2542 . CDS 2461 3128 . + 0 ID=Phyra87743;Parent=Phyra87743;rank=3 scaffold_2542 . exon 2461 3128 . + . ID=Phyra87743.3;Parent=Phyra87743;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_2543 1 3221 scaffold_2543 . repeat_region 1090 1938 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2539 1 3226 scaffold_2539 . repeat_region 216 249 . ? . description=dust scaffold_2539 . repeat_region 217 254 . ? . description=trf scaffold_2539 . repeat_region 222 249 . ? . description=trf scaffold_2539 . repeat_region 226 252 . ? . description=trf scaffold_2539 . repeat_region 902 1820 . ? . description=dust scaffold_2539 . biological_region 2333 2336 0.999 + . logic_name=eponine scaffold_2539 . biological_region 2383 2388 0.999 + . logic_name=eponine scaffold_2539 . biological_region 2487 2490 0.999 + . logic_name=eponine scaffold_2539 . repeat_region 3013 3225 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_2534 1 3228 scaffold_2534 . repeat_region 1482 2330 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2526 1 3235 scaffold_2526 . repeat_region 646 739 . ? . description=trf scaffold_2526 . repeat_region 883 903 . ? . description=dust scaffold_2526 . repeat_region 1045 1078 . ? . description=trf scaffold_2526 . repeat_region 1112 1120 . ? . description=dust scaffold_2526 . repeat_region 2042 2064 . ? . description=dust scaffold_2526 . repeat_region 2581 2623 . ? . description=trf scaffold_2526 . repeat_region 3179 3221 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2616 1 3235 scaffold_2616 . repeat_region 868 1841 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2525 1 3236 scaffold_2525 . repeat_region 957 2163 . ? . description=dust scaffold_2525 . biological_region 2412 2414 0.999 - . logic_name=eponine scaffold_2525 ensembl protein_coding_gene 136 3180 . - . ID=Phyra87739;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2525000001;logic_name=jgi_phyra1 scaffold_2525 ensembl transcript 136 3180 . - . ID=Phyra87739;Parent=Phyra87739;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2525 . CDS 136 154 . - 0 ID=Phyra87739;Parent=Phyra87739;rank=3 scaffold_2525 . exon 136 154 . - . ID=Phyra87739.3;Parent=Phyra87739;constitutive=1;ensembl_phase=2;rank=3 scaffold_2525 . CDS 242 906 . - 0 ID=Phyra87739;Parent=Phyra87739;rank=2 scaffold_2525 . exon 242 906 . - . ID=Phyra87739.2;Parent=Phyra87739;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2525 . CDS 2197 3180 . - 0 ID=Phyra87739;Parent=Phyra87739;rank=1 scaffold_2525 . exon 2197 3180 . - . ID=Phyra87739.1;Parent=Phyra87739;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2528 1 3236 scaffold_2528 . repeat_region 1089 2065 . ? . description=dust scaffold_2528 ensembl protein_coding_gene 12 3229 . - . ID=Phyra87741;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2528000001;logic_name=jgi_phyra1 scaffold_2528 ensembl transcript 12 3229 . - . ID=Phyra87741;Parent=Phyra87741;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2528 . CDS 12 993 . - 0 ID=Phyra87741;Parent=Phyra87741;rank=2 scaffold_2528 . exon 12 993 . - . ID=Phyra87741.2;Parent=Phyra87741;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2528 . CDS 2069 3229 . - 0 ID=Phyra87741;Parent=Phyra87741;rank=1 scaffold_2528 . exon 2069 3229 . - . ID=Phyra87741.1;Parent=Phyra87741;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1821 1 3237 scaffold_1821 . repeat_region 1015 1683 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2524 1 3237 scaffold_2524 . repeat_region 1437 1824 . ? . description=dust scaffold_2524 . repeat_region 2356 2662 . - . description=GypsyPi-1c_LTR ##gff-version 3 ##sequence-region scaffold_2523 1 3238 scaffold_2523 . repeat_region 990 2186 . ? . description=dust scaffold_2523 ensembl protein_coding_gene 627 989 . - . ID=Phyra45728;biotype=protein_coding;external_name=gwEuk.2523.2.1;logic_name=jgi_phyra1 scaffold_2523 ensembl transcript 627 989 . - . ID=Phyra45728;Parent=Phyra45728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2523 . CDS 627 989 . - 0 ID=Phyra45728;Parent=Phyra45728;rank=1 scaffold_2523 . exon 627 989 . - . ID=Phyra45728.1;Parent=Phyra45728;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2520 1 3241 scaffold_2520 . repeat_region 1355 2389 . ? . description=dust scaffold_2520 . repeat_region 3055 3097 . ? . description=trf scaffold_2520 ensembl protein_coding_gene 84 659 . + . ID=Phyra45726;biotype=protein_coding;external_name=gwEuk.2520.5.1;logic_name=jgi_phyra1 scaffold_2520 ensembl transcript 84 659 . + . ID=Phyra45726;Parent=Phyra45726;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2520 . CDS 84 659 . + 0 ID=Phyra45726;Parent=Phyra45726;rank=1 scaffold_2520 . exon 84 659 . + . ID=Phyra45726.1;Parent=Phyra45726;constitutive=1;rank=1 scaffold_2520 ensembl protein_coding_gene 1187 2967 . - . ID=Phyra87738;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2520000002;logic_name=jgi_phyra1 scaffold_2520 ensembl transcript 1187 2967 . - . ID=Phyra87738;Parent=Phyra87738;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2520 . CDS 1187 1280 . - 0 ID=Phyra87738;Parent=Phyra87738;rank=2 scaffold_2520 . exon 1187 1280 . - . ID=Phyra87738.2;Parent=Phyra87738;constitutive=1;ensembl_phase=2;rank=2 scaffold_2520 . CDS 2393 2967 . - 0 ID=Phyra87738;Parent=Phyra87738;rank=1 scaffold_2520 . exon 2393 2967 . - . ID=Phyra87738.1;Parent=Phyra87738;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2518 1 3245 scaffold_2518 ensembl protein_coding_gene 296 2734 . + . ID=Phyra87734;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2518000001;logic_name=jgi_phyra1 scaffold_2518 ensembl transcript 296 2734 . + . ID=Phyra87734;Parent=Phyra87734;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2518 . CDS 296 799 . + 0 ID=Phyra87734;Parent=Phyra87734;rank=1 scaffold_2518 . exon 296 799 . + . ID=Phyra87734.1;Parent=Phyra87734;constitutive=1;rank=1 scaffold_2518 . CDS 825 1682 . + 0 ID=Phyra87734;Parent=Phyra87734;rank=2 scaffold_2518 . exon 825 1682 . + . ID=Phyra87734.2;Parent=Phyra87734;constitutive=1;rank=2 scaffold_2518 . CDS 1766 2734 . + 0 ID=Phyra87734;Parent=Phyra87734;rank=3 scaffold_2518 . exon 1766 2734 . + . ID=Phyra87734.3;Parent=Phyra87734;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_2146 1 3246 scaffold_2146 ensembl protein_coding_gene 77 3123 . + . ID=Phyra87546;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2146000001;logic_name=jgi_phyra1 scaffold_2146 ensembl transcript 77 3123 . + . ID=Phyra87546;Parent=Phyra87546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2146 . CDS 77 1558 . + 0 ID=Phyra87546;Parent=Phyra87546;rank=1 scaffold_2146 . exon 77 1558 . + . ID=Phyra87546.1;Parent=Phyra87546;constitutive=1;rank=1 scaffold_2146 . CDS 1595 2455 . + 0 ID=Phyra87546;Parent=Phyra87546;rank=2 scaffold_2146 . exon 1595 2455 . + . ID=Phyra87546.2;Parent=Phyra87546;constitutive=1;rank=2 scaffold_2146 . CDS 2495 2855 . + 0 ID=Phyra87546;Parent=Phyra87546;rank=3 scaffold_2146 . exon 2495 2855 . + . ID=Phyra87546.3;Parent=Phyra87546;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2146 . CDS 2898 3123 . + 0 ID=Phyra87546;Parent=Phyra87546;rank=4 scaffold_2146 . exon 2898 3123 . + . ID=Phyra87546.4;Parent=Phyra87546;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 ##gff-version 3 ##sequence-region scaffold_2516 1 3246 scaffold_2516 . repeat_region 1035 2250 . ? . description=dust scaffold_2516 . biological_region 2851 2851 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2519 1 3246 scaffold_2519 . biological_region 500 502 0.999 - . logic_name=eponine scaffold_2519 . repeat_region 1809 1828 . ? . description=trf scaffold_2519 ensembl protein_coding_gene 64 1275 . + . ID=Phyra87735;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2519000001;logic_name=jgi_phyra1 scaffold_2519 ensembl transcript 64 1275 . + . ID=Phyra87735;Parent=Phyra87735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2519 . CDS 64 1275 . + 0 ID=Phyra87735;Parent=Phyra87735;rank=1 scaffold_2519 . exon 64 1275 . + . ID=Phyra87735.1;Parent=Phyra87735;constitutive=1;rank=1 scaffold_2519 ensembl protein_coding_gene 2195 3217 . + . ID=Phyra87736;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2519000002;logic_name=jgi_phyra1 scaffold_2519 ensembl transcript 2195 3217 . + . ID=Phyra87736;Parent=Phyra87736;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2519 . CDS 2195 2402 . + 0 ID=Phyra87736;Parent=Phyra87736;rank=1 scaffold_2519 . exon 2195 2402 . + . ID=Phyra87736.1;Parent=Phyra87736;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2519 . CDS 2463 3217 . + 0 ID=Phyra87736;Parent=Phyra87736;rank=2 scaffold_2519 . exon 2463 3217 . + . ID=Phyra87736.2;Parent=Phyra87736;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2515 1 3247 scaffold_2515 . biological_region 244 249 0.999 - . logic_name=eponine scaffold_2515 . biological_region 791 796 0.999 + . logic_name=eponine scaffold_2515 . repeat_region 1040 2157 . ? . description=dust scaffold_2515 . biological_region 3102 3105 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2511 1 3248 scaffold_2511 . repeat_region 112 148 . ? . description=trf scaffold_2511 . repeat_region 1175 2389 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2506 1 3250 scaffold_2506 . repeat_region 1187 2414 . ? . description=dust scaffold_2506 . repeat_region 2676 2739 . ? . description=dust scaffold_2506 . repeat_region 2754 2761 . ? . description=dust scaffold_2506 ensembl protein_coding_gene 12 2636 . + . ID=Phyra87732;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2506000001;logic_name=jgi_phyra1 scaffold_2506 ensembl transcript 12 2636 . + . ID=Phyra87732;Parent=Phyra87732;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2506 . CDS 12 1184 . + 0 ID=Phyra87732;Parent=Phyra87732;rank=1 scaffold_2506 . exon 12 1184 . + . ID=Phyra87732.1;Parent=Phyra87732;constitutive=1;rank=1 scaffold_2506 . CDS 2475 2636 . + 0 ID=Phyra87732;Parent=Phyra87732;rank=2 scaffold_2506 . exon 2475 2636 . + . ID=Phyra87732.2;Parent=Phyra87732;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2501 1 3251 scaffold_2501 . repeat_region 1256 2338 . ? . description=dust scaffold_2501 . repeat_region 2764 2808 . ? . description=trf scaffold_2501 . biological_region 3112 3116 0.999 + . logic_name=eponine scaffold_2501 ensembl protein_coding_gene 30 2471 . - . ID=Phyra87730;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2501000001;logic_name=jgi_phyra1 scaffold_2501 ensembl transcript 30 2471 . - . ID=Phyra87730;Parent=Phyra87730;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2501 . CDS 30 1218 . - 0 ID=Phyra87730;Parent=Phyra87730;rank=2 scaffold_2501 . exon 30 1218 . - . ID=Phyra87730.2;Parent=Phyra87730;constitutive=1;ensembl_phase=2;rank=2 scaffold_2501 . CDS 2368 2471 . - 0 ID=Phyra87730;Parent=Phyra87730;rank=1 scaffold_2501 . exon 2368 2471 . - . ID=Phyra87730.1;Parent=Phyra87730;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2503 1 3253 scaffold_2503 . biological_region 880 887 0.999 - . logic_name=eponine scaffold_2503 . repeat_region 1356 2438 . ? . description=dust scaffold_2503 . repeat_region 2891 2933 . ? . description=trf scaffold_2503 . repeat_region 3032 3078 . ? . description=trf scaffold_2503 ensembl protein_coding_gene 2439 2765 . + . ID=Phyra45718;biotype=protein_coding;external_name=gwEuk.2503.5.1;logic_name=jgi_phyra1 scaffold_2503 ensembl transcript 2439 2765 . + . ID=Phyra45718;Parent=Phyra45718;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2503 . CDS 2439 2765 . + 0 ID=Phyra45718;Parent=Phyra45718;rank=1 scaffold_2503 . exon 2439 2765 . + . ID=Phyra45718.1;Parent=Phyra45718;constitutive=1;rank=1 scaffold_2503 ensembl protein_coding_gene 15 1234 . - . ID=Phyra87731;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2503000001;logic_name=jgi_phyra1 scaffold_2503 ensembl transcript 15 1234 . - . ID=Phyra87731;Parent=Phyra87731;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2503 . CDS 15 1234 . - 0 ID=Phyra87731;Parent=Phyra87731;rank=1 scaffold_2503 . exon 15 1234 . - . ID=Phyra87731.1;Parent=Phyra87731;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2494 1 3256 scaffold_2494 . biological_region 128 131 0.999 - . logic_name=eponine scaffold_2494 . biological_region 863 865 0.999 + . logic_name=eponine scaffold_2494 . repeat_region 910 952 . ? . description=trf scaffold_2494 . repeat_region 1382 2261 . ? . description=dust scaffold_2494 ensembl protein_coding_gene 11 3253 . + . ID=Phyra87729;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2494000001;logic_name=jgi_phyra1 scaffold_2494 ensembl transcript 11 3253 . + . ID=Phyra87729;Parent=Phyra87729;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2494 . CDS 11 347 . + 0 ID=Phyra87729;Parent=Phyra87729;rank=1 scaffold_2494 . exon 11 347 . + . ID=Phyra87729.1;Parent=Phyra87729;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2494 . CDS 402 419 . + 0 ID=Phyra87729;Parent=Phyra87729;rank=2 scaffold_2494 . exon 402 419 . + . ID=Phyra87729.2;Parent=Phyra87729;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2494 . CDS 444 641 . + 0 ID=Phyra87729;Parent=Phyra87729;rank=3 scaffold_2494 . exon 444 641 . + . ID=Phyra87729.3;Parent=Phyra87729;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2494 . CDS 1166 1353 . + 0 ID=Phyra87729;Parent=Phyra87729;rank=4 scaffold_2494 . exon 1166 1353 . + . ID=Phyra87729.4;Parent=Phyra87729;constitutive=1;ensembl_phase=1;rank=4 scaffold_2494 . CDS 2296 3253 . + 0 ID=Phyra87729;Parent=Phyra87729;rank=5 scaffold_2494 . exon 2296 3253 . + . ID=Phyra87729.5;Parent=Phyra87729;constitutive=1;ensembl_end_phase=1;rank=5 ##gff-version 3 ##sequence-region scaffold_2502 1 3256 scaffold_2502 . repeat_region 1028 2008 . ? . description=dust scaffold_2502 . repeat_region 2244 2308 . ? . description=dust scaffold_2502 . repeat_region 2256 2308 . ? . description=trf scaffold_2502 . repeat_region 2257 2307 . ? . description=trf scaffold_2502 . repeat_region 2261 2301 . ? . description=trf scaffold_2502 . repeat_region 2264 2304 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2492 1 3259 scaffold_2492 . biological_region 340 346 0.999 + . logic_name=eponine scaffold_2492 . repeat_region 346 453 . ? . description=trf scaffold_2492 . repeat_region 347 447 . ? . description=trf scaffold_2492 . repeat_region 353 416 . ? . description=dust scaffold_2492 . repeat_region 372 420 . ? . description=trf scaffold_2492 . biological_region 416 418 0.999 + . logic_name=eponine scaffold_2492 . biological_region 424 427 0.999 - . logic_name=eponine scaffold_2492 . biological_region 437 439 0.999 + . logic_name=eponine scaffold_2492 . repeat_region 457 495 . ? . description=trf scaffold_2492 . biological_region 465 465 0.999 + . logic_name=eponine scaffold_2492 . repeat_region 480 529 . ? . description=trf scaffold_2492 . repeat_region 481 544 . ? . description=dust scaffold_2492 . repeat_region 486 542 . ? . description=trf scaffold_2492 . repeat_region 1115 2096 . ? . description=dust scaffold_2492 . biological_region 2175 2178 0.999 + . logic_name=eponine scaffold_2492 . biological_region 2404 2407 0.999 + . logic_name=eponine scaffold_2492 ensembl protein_coding_gene 51 881 . + . ID=Phyra87728;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2492000001;logic_name=jgi_phyra1 scaffold_2492 ensembl transcript 51 881 . + . ID=Phyra87728;Parent=Phyra87728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2492 . exon 51 701 . + . ID=Phyra87728.1;Parent=Phyra87728;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2492 . CDS 52 701 . + 0 ID=Phyra87728;Parent=Phyra87728;rank=1 scaffold_2492 . CDS 722 881 . + 0 ID=Phyra87728;Parent=Phyra87728;rank=2 scaffold_2492 . exon 722 881 . + . ID=Phyra87728.2;Parent=Phyra87728;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_2478 1 3265 scaffold_2478 . repeat_region 513 555 . ? . description=trf scaffold_2478 . repeat_region 1152 1913 . ? . description=dust scaffold_2478 . repeat_region 2193 2235 . ? . description=trf scaffold_2478 ensembl protein_coding_gene 48 615 . + . ID=Phyra87718;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2478000001;logic_name=jgi_phyra1 scaffold_2478 ensembl transcript 48 615 . + . ID=Phyra87718;Parent=Phyra87718;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2478 . CDS 48 405 . + 0 ID=Phyra87718;Parent=Phyra87718;rank=1 scaffold_2478 . exon 48 405 . + . ID=Phyra87718.1;Parent=Phyra87718;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2478 . CDS 575 615 . + 0 ID=Phyra87718;Parent=Phyra87718;rank=2 scaffold_2478 . exon 575 615 . + . ID=Phyra87718.2;Parent=Phyra87718;constitutive=1;ensembl_phase=1;rank=2 scaffold_2478 ensembl protein_coding_gene 2286 3211 . - . ID=Phyra87719;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2478000002;logic_name=jgi_phyra1 scaffold_2478 ensembl transcript 2286 3211 . - . ID=Phyra87719;Parent=Phyra87719;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2478 . CDS 2286 2746 . - 0 ID=Phyra87719;Parent=Phyra87719;rank=2 scaffold_2478 . exon 2286 2746 . - . ID=Phyra87719.2;Parent=Phyra87719;constitutive=1;ensembl_phase=1;rank=2 scaffold_2478 . CDS 2791 3211 . - 0 ID=Phyra87719;Parent=Phyra87719;rank=1 scaffold_2478 . exon 2791 3211 . - . ID=Phyra87719.1;Parent=Phyra87719;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2484 1 3265 scaffold_2484 . biological_region 124 124 0.999 - . logic_name=eponine scaffold_2484 . repeat_region 998 2220 . ? . description=dust scaffold_2484 . biological_region 2527 2533 0.999 + . logic_name=eponine scaffold_2484 ensembl protein_coding_gene 35 807 . + . ID=Phyra87721;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2484000001;logic_name=jgi_phyra1 scaffold_2484 ensembl transcript 35 807 . + . ID=Phyra87721;Parent=Phyra87721;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2484 . exon 35 807 . + . ID=Phyra87721.1;Parent=Phyra87721;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2484 . CDS 37 807 . + 0 ID=Phyra87721;Parent=Phyra87721;rank=1 scaffold_2484 ensembl protein_coding_gene 2306 3242 . + . ID=Phyra87722;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2484000002;logic_name=jgi_phyra1 scaffold_2484 ensembl transcript 2306 3242 . + . ID=Phyra87722;Parent=Phyra87722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2484 . CDS 2306 3242 . + 0 ID=Phyra87722;Parent=Phyra87722;rank=1 scaffold_2484 . exon 2306 3242 . + . ID=Phyra87722.1;Parent=Phyra87722;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2481 1 3266 scaffold_2481 . biological_region 454 459 0.999 + . logic_name=eponine scaffold_2481 . biological_region 473 476 0.999 + . logic_name=eponine scaffold_2481 . biological_region 527 532 0.999 - . logic_name=eponine scaffold_2481 ensembl protein_coding_gene 40 3250 . + . ID=Phyra87720;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2481000001;logic_name=jgi_phyra1 scaffold_2481 ensembl transcript 40 3250 . + . ID=Phyra87720;Parent=Phyra87720;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2481 . exon 40 2627 . + . ID=Phyra87720.1;Parent=Phyra87720;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2481 . CDS 42 2627 . + 0 ID=Phyra87720;Parent=Phyra87720;rank=1 scaffold_2481 . CDS 2876 3250 . + 0 ID=Phyra87720;Parent=Phyra87720;rank=2 scaffold_2481 . exon 2876 3250 . + . ID=Phyra87720.2;Parent=Phyra87720;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2475 1 3271 scaffold_2475 . biological_region 614 619 0.999 + . logic_name=eponine scaffold_2475 . repeat_region 916 2085 . ? . description=dust scaffold_2475 . biological_region 2179 2182 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2474 1 3273 scaffold_2474 . repeat_region 61 856 . - . description=GypsyPi-1c_I-int scaffold_2474 . repeat_region 1061 2178 . ? . description=dust scaffold_2474 . biological_region 2787 2791 0.999 - . logic_name=eponine scaffold_2474 ensembl protein_coding_gene 16 570 . - . ID=Phyra87717;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2474000001;logic_name=jgi_phyra1 scaffold_2474 ensembl transcript 16 570 . - . ID=Phyra87717;Parent=Phyra87717;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2474 . CDS 16 570 . - 0 ID=Phyra87717;Parent=Phyra87717;rank=1 scaffold_2474 . exon 16 570 . - . ID=Phyra87717.1;Parent=Phyra87717;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2470 1 3274 scaffold_2470 . repeat_region 887 1755 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2471 1 3274 scaffold_2471 . repeat_region 6 47 . ? . description=trf scaffold_2471 . repeat_region 344 380 . ? . description=trf scaffold_2471 . repeat_region 344 393 . ? . description=dust scaffold_2471 . repeat_region 916 2089 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2468 1 3275 scaffold_2468 . repeat_region 611 630 . ? . description=trf scaffold_2468 . repeat_region 1068 2080 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2472 1 3276 scaffold_2472 . repeat_region 1102 2024 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2140 1 3277 scaffold_2140 . repeat_region 27 607 . + . description=GypsyPi-1c_I-int scaffold_2140 . repeat_region 925 1203 . + . description=GypsyPi-1c_I-int scaffold_2140 . biological_region 1277 1279 0.999 - . logic_name=eponine scaffold_2140 . biological_region 1424 1428 0.999 - . logic_name=eponine scaffold_2140 . repeat_region 1459 1475 . ? . description=dust scaffold_2140 . biological_region 2175 2178 0.999 + . logic_name=eponine scaffold_2140 . biological_region 2268 2268 0.999 - . logic_name=eponine scaffold_2140 . biological_region 2360 2362 0.999 + . logic_name=eponine scaffold_2140 ensembl protein_coding_gene 304 549 . + . ID=Phyra44623;biotype=protein_coding;external_name=gwEuk.2140.1.1;logic_name=jgi_phyra1 scaffold_2140 ensembl transcript 304 549 . + . ID=Phyra44623;Parent=Phyra44623;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2140 . CDS 304 549 . + 0 ID=Phyra44623;Parent=Phyra44623;rank=1 scaffold_2140 . exon 304 549 . + . ID=Phyra44623.1;Parent=Phyra44623;constitutive=1;rank=1 scaffold_2140 ensembl protein_coding_gene 1220 2837 . - . ID=Phyra87542;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2140000001;logic_name=jgi_phyra1 scaffold_2140 ensembl transcript 1220 2837 . - . ID=Phyra87542;Parent=Phyra87542;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2140 . CDS 1220 1405 . - 0 ID=Phyra87542;Parent=Phyra87542;rank=4 scaffold_2140 . exon 1220 1405 . - . ID=Phyra87542.4;Parent=Phyra87542;constitutive=1;rank=4 scaffold_2140 . CDS 1728 1861 . - 0 ID=Phyra87542;Parent=Phyra87542;rank=3 scaffold_2140 . exon 1728 1861 . - . ID=Phyra87542.3;Parent=Phyra87542;constitutive=1;ensembl_phase=1;rank=3 scaffold_2140 . CDS 1886 1903 . - 0 ID=Phyra87542;Parent=Phyra87542;rank=2 scaffold_2140 . exon 1886 1903 . - . ID=Phyra87542.2;Parent=Phyra87542;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2140 . CDS 1958 2837 . - 0 ID=Phyra87542;Parent=Phyra87542;rank=1 scaffold_2140 . exon 1958 2837 . - . ID=Phyra87542.1;Parent=Phyra87542;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2487 1 3277 scaffold_2487 . repeat_region 1220 1302 . ? . description=trf scaffold_2487 . repeat_region 1396 2195 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2509 1 3277 scaffold_2509 . repeat_region 33 705 . - . description=GypsyPi-1c_I-int scaffold_2509 . repeat_region 706 886 . - . description=GypsyPi-1c_LTR scaffold_2509 . repeat_region 895 2092 . ? . description=dust scaffold_2509 . repeat_region 2170 2233 . - . description=GypsyPi-1c_I-int scaffold_2509 ensembl protein_coding_gene 80 618 . - . ID=Phyra87733;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2509000001;logic_name=jgi_phyra1 scaffold_2509 ensembl transcript 80 618 . - . ID=Phyra87733;Parent=Phyra87733;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2509 . CDS 80 618 . - 0 ID=Phyra87733;Parent=Phyra87733;rank=1 scaffold_2509 . exon 80 618 . - . ID=Phyra87733.1;Parent=Phyra87733;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2462 1 3278 scaffold_2462 . repeat_region 420 460 . ? . description=trf scaffold_2462 . repeat_region 489 531 . ? . description=trf scaffold_2462 . repeat_region 949 2212 . ? . description=dust scaffold_2462 ensembl protein_coding_gene 19 3265 . - . ID=Phyra87716;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2462000001;logic_name=jgi_phyra1 scaffold_2462 ensembl transcript 19 3265 . - . ID=Phyra87716;Parent=Phyra87716;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2462 . CDS 19 238 . - 0 ID=Phyra87716;Parent=Phyra87716;rank=3 scaffold_2462 . exon 19 238 . - . ID=Phyra87716.3;Parent=Phyra87716;constitutive=1;ensembl_phase=2;rank=3 scaffold_2462 . CDS 586 934 . - 0 ID=Phyra87716;Parent=Phyra87716;rank=2 scaffold_2462 . exon 586 934 . - . ID=Phyra87716.2;Parent=Phyra87716;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2462 . CDS 2248 3265 . - 0 ID=Phyra87716;Parent=Phyra87716;rank=1 scaffold_2462 . exon 2248 3265 . - . ID=Phyra87716.1;Parent=Phyra87716;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2461 1 3279 scaffold_2461 . repeat_region 842 2106 . ? . description=dust scaffold_2461 ensembl pseudogene 2107 2659 . - . ID=Phyra45504;biotype=pseudogene;external_name=gwEuk.2461.3.1;logic_name=jgi_phyra1 scaffold_2461 ensembl pseudogene 2107 2659 . - . ID=Phyra45504;Parent=Phyra45504;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_2461 . exon 2107 2659 . - . ID=Phyra45504.1;Parent=Phyra45504;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2488 1 3279 scaffold_2488 . repeat_region 830 2084 . ? . description=dust scaffold_2488 ensembl protein_coding_gene 3139 3267 . - . ID=Phyra45529;biotype=protein_coding;external_name=gwEuk.2488.1.1;logic_name=jgi_phyra1 scaffold_2488 ensembl transcript 3139 3267 . - . ID=Phyra45529;Parent=Phyra45529;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2488 . CDS 3139 3267 . - 0 ID=Phyra45529;Parent=Phyra45529;rank=1 scaffold_2488 . exon 3139 3267 . - . ID=Phyra45529.1;Parent=Phyra45529;constitutive=1;rank=1 scaffold_2488 ensembl protein_coding_gene 82 3010 . + . ID=Phyra87726;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2488000001;logic_name=jgi_phyra1 scaffold_2488 ensembl transcript 82 3010 . + . ID=Phyra87726;Parent=Phyra87726;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2488 . CDS 82 826 . + 0 ID=Phyra87726;Parent=Phyra87726;rank=1 scaffold_2488 . exon 82 826 . + . ID=Phyra87726.1;Parent=Phyra87726;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2488 . CDS 2103 3010 . + 0 ID=Phyra87726;Parent=Phyra87726;rank=2 scaffold_2488 . exon 2103 3010 . + . ID=Phyra87726.2;Parent=Phyra87726;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2453 1 3282 scaffold_2453 . biological_region 817 819 0.999 - . logic_name=eponine scaffold_2453 . biological_region 873 878 0.999 + . logic_name=eponine scaffold_2453 . repeat_region 1399 2466 . ? . description=dust scaffold_2453 ensembl protein_coding_gene 1 3240 . + . ID=Phyra87711;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2453000001;logic_name=jgi_phyra1 scaffold_2453 ensembl transcript 1 3240 . + . ID=Phyra87711;Parent=Phyra87711;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2453 . exon 1 91 . + . ID=Phyra87711.1;Parent=Phyra87711;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2453 . CDS 2 91 . + 0 ID=Phyra87711;Parent=Phyra87711;rank=1 scaffold_2453 . CDS 145 276 . + 0 ID=Phyra87711;Parent=Phyra87711;rank=2 scaffold_2453 . exon 145 276 . + . ID=Phyra87711.2;Parent=Phyra87711;constitutive=1;rank=2 scaffold_2453 . CDS 311 1389 . + 0 ID=Phyra87711;Parent=Phyra87711;rank=3 scaffold_2453 . exon 311 1389 . + . ID=Phyra87711.3;Parent=Phyra87711;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2453 . CDS 2539 2936 . + 0 ID=Phyra87711;Parent=Phyra87711;rank=4 scaffold_2453 . exon 2539 2936 . + . ID=Phyra87711.4;Parent=Phyra87711;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_2453 . CDS 3092 3150 . + 0 ID=Phyra87711;Parent=Phyra87711;rank=5 scaffold_2453 . exon 3092 3150 . + . ID=Phyra87711.5;Parent=Phyra87711;constitutive=1;ensembl_phase=1;rank=5 scaffold_2453 . CDS 3232 3240 . + 0 ID=Phyra87711;Parent=Phyra87711;rank=6 scaffold_2453 . exon 3232 3240 . + . ID=Phyra87711.6;Parent=Phyra87711;constitutive=1;rank=6 ##gff-version 3 ##sequence-region scaffold_2454 1 3282 scaffold_2454 . repeat_region 990 2194 . ? . description=dust scaffold_2454 . repeat_region 2698 2718 . ? . description=trf scaffold_2454 ensembl protein_coding_gene 182 985 . - . ID=Phyra45501;biotype=protein_coding;external_name=gwEuk.2454.5.1;logic_name=jgi_phyra1 scaffold_2454 ensembl transcript 182 985 . - . ID=Phyra45501;Parent=Phyra45501;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2454 . CDS 182 985 . - 0 ID=Phyra45501;Parent=Phyra45501;rank=1 scaffold_2454 . exon 182 985 . - . ID=Phyra45501.1;Parent=Phyra45501;constitutive=1;rank=1 scaffold_2454 ensembl protein_coding_gene 2308 3268 . + . ID=Phyra87713;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2454000002;logic_name=jgi_phyra1 scaffold_2454 ensembl transcript 2308 3268 . + . ID=Phyra87713;Parent=Phyra87713;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2454 . CDS 2308 3268 . + 0 ID=Phyra87713;Parent=Phyra87713;rank=1 scaffold_2454 . exon 2308 3268 . + . ID=Phyra87713.1;Parent=Phyra87713;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2456 1 3282 scaffold_2456 . repeat_region 1 466 . - . description=GypsyPi-1c_I-int scaffold_2456 . repeat_region 799 841 . ? . description=trf scaffold_2456 . repeat_region 1363 2279 . ? . description=dust scaffold_2456 . repeat_region 3217 3257 . ? . description=trf scaffold_2456 ensembl protein_coding_gene 1133 3222 . + . ID=Phyra87714;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2456000001;logic_name=jgi_phyra1 scaffold_2456 ensembl transcript 1133 3222 . + . ID=Phyra87714;Parent=Phyra87714;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2456 . CDS 1133 1302 . + 0 ID=Phyra87714;Parent=Phyra87714;rank=1 scaffold_2456 . exon 1133 1302 . + . ID=Phyra87714.1;Parent=Phyra87714;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2456 . CDS 2334 3222 . + 0 ID=Phyra87714;Parent=Phyra87714;rank=2 scaffold_2456 . exon 2334 3222 . + . ID=Phyra87714.2;Parent=Phyra87714;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_2451 1 3284 scaffold_2451 . repeat_region 941 2192 . ? . description=dust scaffold_2451 . repeat_region 2212 3264 . - . description=GypsyPi-1c_I-int scaffold_2451 ensembl protein_coding_gene 144 848 . - . ID=Phyra87710;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2451000001;logic_name=jgi_phyra1 scaffold_2451 ensembl transcript 144 848 . - . ID=Phyra87710;Parent=Phyra87710;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2451 . CDS 144 848 . - 0 ID=Phyra87710;Parent=Phyra87710;rank=1 scaffold_2451 . exon 144 848 . - . ID=Phyra87710.1;Parent=Phyra87710;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2457 1 3284 scaffold_2457 . repeat_region 254 293 . ? . description=trf scaffold_2457 . repeat_region 321 380 . ? . description=dust scaffold_2457 . repeat_region 863 2107 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2486 1 3288 scaffold_2486 . repeat_region 1066 1090 . ? . description=trf scaffold_2486 . repeat_region 1066 1090 . ? . description=dust scaffold_2486 . repeat_region 1460 2260 . ? . description=dust scaffold_2486 ensembl protein_coding_gene 21 722 . - . ID=Phyra87724;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2486000001;logic_name=jgi_phyra1 scaffold_2486 ensembl transcript 21 722 . - . ID=Phyra87724;Parent=Phyra87724;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2486 . CDS 21 722 . - 0 ID=Phyra87724;Parent=Phyra87724;rank=1 scaffold_2486 . exon 21 722 . - . ID=Phyra87724.1;Parent=Phyra87724;constitutive=1;rank=1 scaffold_2486 ensembl protein_coding_gene 2617 3281 . - . ID=Phyra87725;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2486000002;logic_name=jgi_phyra1 scaffold_2486 ensembl transcript 2617 3281 . - . ID=Phyra87725;Parent=Phyra87725;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2486 . CDS 2617 2681 . - 0 ID=Phyra87725;Parent=Phyra87725;rank=2 scaffold_2486 . exon 2617 2681 . - . ID=Phyra87725.2;Parent=Phyra87725;constitutive=1;ensembl_phase=1;rank=2 scaffold_2486 . CDS 2837 3281 . - 0 ID=Phyra87725;Parent=Phyra87725;rank=1 scaffold_2486 . exon 2837 3281 . - . ID=Phyra87725.1;Parent=Phyra87725;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2058 1 3289 scaffold_2058 . biological_region 300 304 0.999 - . logic_name=eponine scaffold_2058 . repeat_region 637 679 . ? . description=trf scaffold_2058 . repeat_region 1176 1218 . ? . description=trf scaffold_2058 . repeat_region 1264 2191 . ? . description=dust scaffold_2058 . repeat_region 2293 2314 . ? . description=trf scaffold_2058 ensembl protein_coding_gene 40 3205 . - . ID=Phyra87487;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2058000001;logic_name=jgi_phyra1 scaffold_2058 ensembl transcript 40 3205 . - . ID=Phyra87487;Parent=Phyra87487;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2058 . CDS 40 407 . - 0 ID=Phyra87487;Parent=Phyra87487;rank=3 scaffold_2058 . exon 40 407 . - . ID=Phyra87487.3;Parent=Phyra87487;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2058 . CDS 734 954 . - 0 ID=Phyra87487;Parent=Phyra87487;rank=2 scaffold_2058 . exon 734 954 . - . ID=Phyra87487.2;Parent=Phyra87487;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2058 . CDS 2219 3205 . - 0 ID=Phyra87487;Parent=Phyra87487;rank=1 scaffold_2058 . exon 2219 3205 . - . ID=Phyra87487.1;Parent=Phyra87487;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2447 1 3290 scaffold_2447 . repeat_region 688 1706 . ? . description=dust scaffold_2447 . repeat_region 2634 2659 . ? . description=dust scaffold_2447 . repeat_region 2713 2723 . ? . description=dust scaffold_2447 . repeat_region 2788 2796 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2439 1 3294 scaffold_2439 . repeat_region 168 201 . ? . description=trf scaffold_2439 . repeat_region 1345 2341 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2432 1 3295 scaffold_2432 . repeat_region 16 341 . + . description=Polinton-1_PI scaffold_2432 . repeat_region 500 852 . + . description=Polinton-1_PI scaffold_2432 . repeat_region 1016 2175 . ? . description=dust scaffold_2432 . repeat_region 2176 2810 . + . description=Polinton-1_PI scaffold_2432 . repeat_region 2813 2821 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2429 1 3296 scaffold_2429 . repeat_region 1089 2205 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2430 1 3296 scaffold_2430 . repeat_region 4 827 . - . description=GypsyPi-1c_I-int scaffold_2430 . repeat_region 1208 2351 . ? . description=dust scaffold_2430 . biological_region 2502 2503 0.999 - . logic_name=eponine scaffold_2430 ensembl protein_coding_gene 147 3153 . - . ID=Phyra87702;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2430000001;logic_name=jgi_phyra1 scaffold_2430 ensembl transcript 147 3153 . - . ID=Phyra87702;Parent=Phyra87702;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2430 . CDS 147 1142 . - 0 ID=Phyra87702;Parent=Phyra87702;rank=3 scaffold_2430 . exon 147 1142 . - . ID=Phyra87702.3;Parent=Phyra87702;constitutive=1;rank=3 scaffold_2430 . CDS 2476 2693 . - 0 ID=Phyra87702;Parent=Phyra87702;rank=2 scaffold_2430 . exon 2476 2693 . - . ID=Phyra87702.2;Parent=Phyra87702;constitutive=1;ensembl_phase=1;rank=2 scaffold_2430 . CDS 2757 3153 . - 0 ID=Phyra87702;Parent=Phyra87702;rank=1 scaffold_2430 . exon 2757 3153 . - . ID=Phyra87702.1;Parent=Phyra87702;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2433 1 3296 scaffold_2433 . repeat_region 901 1775 . ? . description=dust scaffold_2433 ensembl protein_coding_gene 1780 2376 . - . ID=Phyra45457;biotype=protein_coding;external_name=gwEuk.2433.2.1;logic_name=jgi_phyra1 scaffold_2433 ensembl transcript 1780 2376 . - . ID=Phyra45457;Parent=Phyra45457;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2433 . CDS 1780 2376 . - 0 ID=Phyra45457;Parent=Phyra45457;rank=1 scaffold_2433 . exon 1780 2376 . - . ID=Phyra45457.1;Parent=Phyra45457;constitutive=1;rank=1 scaffold_2433 ensembl protein_coding_gene 3 545 . + . ID=Phyra45462;biotype=protein_coding;external_name=gwEuk.2433.7.1;logic_name=jgi_phyra1 scaffold_2433 ensembl transcript 3 545 . + . ID=Phyra45462;Parent=Phyra45462;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2433 . CDS 3 545 . + 0 ID=Phyra45462;Parent=Phyra45462;rank=1 scaffold_2433 . exon 3 545 . + . ID=Phyra45462.1;Parent=Phyra45462;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2436 1 3296 scaffold_2436 . repeat_region 436 478 . ? . description=trf scaffold_2436 . repeat_region 577 623 . ? . description=trf scaffold_2436 . repeat_region 806 848 . ? . description=trf scaffold_2436 . repeat_region 1012 2299 . ? . description=dust scaffold_2436 . repeat_region 2944 2974 . ? . description=trf scaffold_2436 . biological_region 3085 3088 0.999 - . logic_name=eponine scaffold_2436 ensembl protein_coding_gene 52 327 . + . ID=Phyra45468;biotype=protein_coding;external_name=gwEuk.2436.3.1;logic_name=jgi_phyra1 scaffold_2436 ensembl transcript 52 327 . + . ID=Phyra45468;Parent=Phyra45468;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2436 . CDS 52 327 . + 0 ID=Phyra45468;Parent=Phyra45468;rank=1 scaffold_2436 . exon 52 327 . + . ID=Phyra45468.1;Parent=Phyra45468;constitutive=1;rank=1 scaffold_2436 ensembl protein_coding_gene 2314 3285 . + . ID=Phyra87706;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2436000002;logic_name=jgi_phyra1 scaffold_2436 ensembl transcript 2314 3285 . + . ID=Phyra87706;Parent=Phyra87706;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2436 . CDS 2314 2550 . + 0 ID=Phyra87706;Parent=Phyra87706;rank=1 scaffold_2436 . exon 2314 2550 . + . ID=Phyra87706.1;Parent=Phyra87706;constitutive=1;rank=1 scaffold_2436 . CDS 2590 3285 . + 0 ID=Phyra87706;Parent=Phyra87706;rank=2 scaffold_2436 . exon 2590 3285 . + . ID=Phyra87706.2;Parent=Phyra87706;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2427 1 3297 scaffold_2427 . repeat_region 128 184 . ? . description=trf scaffold_2427 . biological_region 392 396 0.999 - . logic_name=eponine scaffold_2427 . repeat_region 829 2125 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2425 1 3298 scaffold_2425 . repeat_region 818 1970 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2422 1 3300 scaffold_2422 . repeat_region 1 218 . - . description=Polinton-1_PI scaffold_2422 . repeat_region 302 491 . - . description=Polinton-1_PI scaffold_2422 . repeat_region 652 984 . - . description=Polinton-1_PI scaffold_2422 . repeat_region 1010 2204 . ? . description=dust scaffold_2422 . repeat_region 2205 2392 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_2434 1 3300 scaffold_2434 . repeat_region 1413 2522 . ? . description=dust scaffold_2434 ensembl protein_coding_gene 23 840 . - . ID=Phyra87704;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2434000001;logic_name=jgi_phyra1 scaffold_2434 ensembl transcript 23 840 . - . ID=Phyra87704;Parent=Phyra87704;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2434 . CDS 23 840 . - 0 ID=Phyra87704;Parent=Phyra87704;rank=1 scaffold_2434 . exon 23 840 . - . ID=Phyra87704.1;Parent=Phyra87704;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2423 1 3302 scaffold_2423 . repeat_region 924 1628 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2428 1 3302 scaffold_2428 . biological_region 866 868 0.999 + . logic_name=eponine scaffold_2428 . repeat_region 1008 2113 . ? . description=dust scaffold_2428 . biological_region 2828 2833 0.999 - . logic_name=eponine scaffold_2428 ensembl protein_coding_gene 2148 2840 . + . ID=Phyra87701;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2428000001;logic_name=jgi_phyra1 scaffold_2428 ensembl transcript 2148 2840 . + . ID=Phyra87701;Parent=Phyra87701;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2428 . CDS 2148 2840 . + 0 ID=Phyra87701;Parent=Phyra87701;rank=1 scaffold_2428 . exon 2148 2840 . + . ID=Phyra87701.1;Parent=Phyra87701;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2414 1 3305 scaffold_2414 . biological_region 301 303 0.999 - . logic_name=eponine scaffold_2414 . repeat_region 879 2159 . ? . description=dust scaffold_2414 . biological_region 2911 2913 0.999 - . logic_name=eponine scaffold_2414 ensembl protein_coding_gene 2345 3172 . + . ID=Phyra87698;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2414000001;logic_name=jgi_phyra1 scaffold_2414 ensembl transcript 2345 3172 . + . ID=Phyra87698;Parent=Phyra87698;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2414 . CDS 2345 3172 . + 0 ID=Phyra87698;Parent=Phyra87698;rank=1 scaffold_2414 . exon 2345 3172 . + . ID=Phyra87698.1;Parent=Phyra87698;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2415 1 3305 scaffold_2415 . repeat_region 1467 2419 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2408 1 3308 scaffold_2408 . repeat_region 1036 2291 . ? . description=dust scaffold_2408 ensembl protein_coding_gene 30 934 . - . ID=Phyra87693;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2408000001;logic_name=jgi_phyra1 scaffold_2408 ensembl transcript 30 934 . - . ID=Phyra87693;Parent=Phyra87693;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2408 . CDS 30 197 . - 0 ID=Phyra87693;Parent=Phyra87693;rank=3 scaffold_2408 . exon 30 197 . - . ID=Phyra87693.3;Parent=Phyra87693;constitutive=1;rank=3 scaffold_2408 . CDS 218 310 . - 0 ID=Phyra87693;Parent=Phyra87693;rank=2 scaffold_2408 . exon 218 310 . - . ID=Phyra87693.2;Parent=Phyra87693;constitutive=1;rank=2 scaffold_2408 . CDS 347 934 . - 0 ID=Phyra87693;Parent=Phyra87693;rank=1 scaffold_2408 . exon 347 934 . - . ID=Phyra87693.1;Parent=Phyra87693;constitutive=1;rank=1 scaffold_2408 ensembl protein_coding_gene 2590 3187 . + . ID=Phyra87694;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2408000002;logic_name=jgi_phyra1 scaffold_2408 ensembl transcript 2590 3187 . + . ID=Phyra87694;Parent=Phyra87694;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2408 . CDS 2590 3095 . + 0 ID=Phyra87694;Parent=Phyra87694;rank=1 scaffold_2408 . exon 2590 3095 . + . ID=Phyra87694.1;Parent=Phyra87694;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2408 . CDS 3157 3187 . + 0 ID=Phyra87694;Parent=Phyra87694;rank=2 scaffold_2408 . exon 3157 3187 . + . ID=Phyra87694.2;Parent=Phyra87694;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_2404 1 3312 scaffold_2404 . biological_region 217 218 0.999 + . logic_name=eponine scaffold_2404 . repeat_region 1204 2342 . ? . description=dust scaffold_2404 ensembl protein_coding_gene 147 887 . + . ID=Phyra87691;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2404000001;logic_name=jgi_phyra1 scaffold_2404 ensembl transcript 147 887 . + . ID=Phyra87691;Parent=Phyra87691;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2404 . exon 147 290 . + . ID=Phyra87691.1;Parent=Phyra87691;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2404 . CDS 148 290 . + 0 ID=Phyra87691;Parent=Phyra87691;rank=1 scaffold_2404 . CDS 354 612 . + 0 ID=Phyra87691;Parent=Phyra87691;rank=2 scaffold_2404 . exon 354 612 . + . ID=Phyra87691.2;Parent=Phyra87691;constitutive=1;ensembl_phase=2;rank=2 scaffold_2404 . CDS 813 824 . + 0 ID=Phyra87691;Parent=Phyra87691;rank=3 scaffold_2404 . exon 813 824 . + . ID=Phyra87691.3;Parent=Phyra87691;constitutive=1;rank=3 scaffold_2404 . CDS 876 887 . + 0 ID=Phyra87691;Parent=Phyra87691;rank=4 scaffold_2404 . exon 876 887 . + . ID=Phyra87691.4;Parent=Phyra87691;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_2403 1 3313 scaffold_2403 . repeat_region 186 464 . - . description=GypsyPi-1c_I-int scaffold_2403 . repeat_region 769 965 . - . description=GypsyPi-1c_I-int scaffold_2403 . repeat_region 966 1619 . ? . description=dust scaffold_2403 . repeat_region 1769 3046 . - . description=GypsyPi-1c_I-int scaffold_2403 ensembl protein_coding_gene 2071 3238 . - . ID=Phyra87690;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2403000001;logic_name=jgi_phyra1 scaffold_2403 ensembl transcript 2071 3238 . - . ID=Phyra87690;Parent=Phyra87690;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2403 . CDS 2071 2077 . - 0 ID=Phyra87690;Parent=Phyra87690;rank=3 scaffold_2403 . exon 2071 2077 . - . ID=Phyra87690.3;Parent=Phyra87690;constitutive=1;ensembl_phase=2;rank=3 scaffold_2403 . CDS 2134 2770 . - 0 ID=Phyra87690;Parent=Phyra87690;rank=2 scaffold_2403 . exon 2134 2770 . - . ID=Phyra87690.2;Parent=Phyra87690;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2403 . CDS 2977 3238 . - 0 ID=Phyra87690;Parent=Phyra87690;rank=1 scaffold_2403 . exon 2977 3238 . - . ID=Phyra87690.1;Parent=Phyra87690;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2401 1 3314 scaffold_2401 . biological_region 844 846 0.999 - . logic_name=eponine scaffold_2401 . biological_region 936 941 0.999 - . logic_name=eponine scaffold_2401 . biological_region 938 938 0.999 + . logic_name=eponine scaffold_2401 . biological_region 991 995 0.999 + . logic_name=eponine scaffold_2401 . biological_region 1028 1031 0.999 - . logic_name=eponine scaffold_2401 . repeat_region 1278 2508 . ? . description=dust scaffold_2401 . repeat_region 2485 2508 . ? . description=trf scaffold_2401 . repeat_region 2613 3291 . - . description=GypsyPi-1c_I-int scaffold_2401 ensembl protein_coding_gene 2734 2979 . - . ID=Phyra45446;biotype=protein_coding;external_name=gwEuk.2401.1.1;logic_name=jgi_phyra1 scaffold_2401 ensembl transcript 2734 2979 . - . ID=Phyra45446;Parent=Phyra45446;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2401 . CDS 2734 2979 . - 0 ID=Phyra45446;Parent=Phyra45446;rank=1 scaffold_2401 . exon 2734 2979 . - . ID=Phyra45446.1;Parent=Phyra45446;constitutive=1;rank=1 scaffold_2401 ensembl protein_coding_gene 368 1029 . + . ID=Phyra87689;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2401000001;logic_name=jgi_phyra1 scaffold_2401 ensembl transcript 368 1029 . + . ID=Phyra87689;Parent=Phyra87689;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2401 . CDS 368 944 . + 0 ID=Phyra87689;Parent=Phyra87689;rank=1 scaffold_2401 . exon 368 944 . + . ID=Phyra87689.1;Parent=Phyra87689;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2401 . CDS 1016 1029 . + 0 ID=Phyra87689;Parent=Phyra87689;rank=2 scaffold_2401 . exon 1016 1029 . + . ID=Phyra87689.2;Parent=Phyra87689;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2402 1 3314 scaffold_2402 . repeat_region 1061 2348 . ? . description=dust scaffold_2402 . repeat_region 2375 2394 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2400 1 3315 scaffold_2400 . repeat_region 718 775 . ? . description=trf scaffold_2400 . repeat_region 1094 2013 . ? . description=dust scaffold_2400 . repeat_region 2918 2959 . ? . description=trf scaffold_2400 ensembl protein_coding_gene 3071 3295 . - . ID=Phyra45445;biotype=protein_coding;external_name=gwEuk.2400.2.1;logic_name=jgi_phyra1 scaffold_2400 ensembl transcript 3071 3295 . - . ID=Phyra45445;Parent=Phyra45445;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2400 . CDS 3071 3295 . - 0 ID=Phyra45445;Parent=Phyra45445;rank=1 scaffold_2400 . exon 3071 3295 . - . ID=Phyra45445.1;Parent=Phyra45445;constitutive=1;rank=1 scaffold_2400 ensembl protein_coding_gene 27 632 . - . ID=Phyra87688;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2400000001;logic_name=jgi_phyra1 scaffold_2400 ensembl transcript 27 632 . - . ID=Phyra87688;Parent=Phyra87688;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2400 . CDS 27 632 . - 0 ID=Phyra87688;Parent=Phyra87688;rank=1 scaffold_2400 . exon 27 632 . - . ID=Phyra87688.1;Parent=Phyra87688;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2406 1 3315 scaffold_2406 . repeat_region 1324 2237 . ? . description=dust scaffold_2406 ensembl protein_coding_gene 2359 2997 . + . ID=Phyra87692;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2406000001;logic_name=jgi_phyra1 scaffold_2406 ensembl transcript 2359 2997 . + . ID=Phyra87692;Parent=Phyra87692;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2406 . CDS 2359 2997 . + 0 ID=Phyra87692;Parent=Phyra87692;rank=1 scaffold_2406 . exon 2359 2997 . + . ID=Phyra87692.1;Parent=Phyra87692;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2397 1 3316 scaffold_2397 . repeat_region 518 525 . ? . description=dust scaffold_2397 . repeat_region 768 1830 . ? . description=dust scaffold_2397 . repeat_region 2221 2228 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2396 1 3317 scaffold_2396 . repeat_region 1005 1013 . ? . description=dust scaffold_2396 . repeat_region 1068 2384 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2394 1 3318 scaffold_2394 . repeat_region 533 541 . ? . description=dust scaffold_2394 . repeat_region 925 2186 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2395 1 3318 scaffold_2395 . repeat_region 899 2097 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2390 1 3320 scaffold_2390 . repeat_region 1150 2175 . ? . description=dust scaffold_2390 ensembl protein_coding_gene 439 2522 . + . ID=Phyra87686;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2390000001;logic_name=jgi_phyra1 scaffold_2390 ensembl transcript 439 2522 . + . ID=Phyra87686;Parent=Phyra87686;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2390 . CDS 439 1122 . + 0 ID=Phyra87686;Parent=Phyra87686;rank=1 scaffold_2390 . exon 439 1122 . + . ID=Phyra87686.1;Parent=Phyra87686;constitutive=1;rank=1 scaffold_2390 . CDS 2268 2522 . + 0 ID=Phyra87686;Parent=Phyra87686;rank=2 scaffold_2390 . exon 2268 2522 . + . ID=Phyra87686.2;Parent=Phyra87686;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2398 1 3322 scaffold_2398 . repeat_region 1025 1038 . ? . description=dust scaffold_2398 . repeat_region 1219 1803 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2387 1 3325 scaffold_2387 . repeat_region 1232 2084 . ? . description=dust scaffold_2387 . repeat_region 2210 2776 . + . description=GypsyPi-1c_I-int scaffold_2387 . biological_region 2475 2477 0.999 + . logic_name=eponine scaffold_2387 . biological_region 3001 3005 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2552 1 3325 scaffold_2552 . repeat_region 845 2139 . ? . description=dust scaffold_2552 . biological_region 2198 2200 0.999 + . logic_name=eponine scaffold_2552 . biological_region 2343 2347 0.999 - . logic_name=eponine scaffold_2552 . biological_region 2394 2395 0.999 - . logic_name=eponine scaffold_2552 . repeat_region 3209 3230 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2465 1 3326 scaffold_2465 . repeat_region 808 2100 . ? . description=dust scaffold_2465 . repeat_region 2178 2611 . + . description=Gypsy-2-I_PI-int ##gff-version 3 ##sequence-region scaffold_2382 1 3328 scaffold_2382 . biological_region 12 14 0.999 + . logic_name=eponine scaffold_2382 . biological_region 114 116 0.999 - . logic_name=eponine scaffold_2382 . biological_region 208 208 0.999 + . logic_name=eponine scaffold_2382 . biological_region 298 301 0.999 - . logic_name=eponine scaffold_2382 . repeat_region 990 2130 . ? . description=dust scaffold_2382 . repeat_region 2131 3253 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_2384 1 3328 scaffold_2384 . repeat_region 545 608 . ? . description=dust scaffold_2384 . repeat_region 557 613 . ? . description=trf scaffold_2384 . repeat_region 901 986 . ? . description=trf scaffold_2384 . repeat_region 1083 2385 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2385 1 3329 scaffold_2385 . biological_region 5 6 0.999 + . logic_name=eponine scaffold_2385 . repeat_region 1079 2232 . ? . description=dust scaffold_2385 . repeat_region 2685 2741 . ? . description=trf scaffold_2385 . repeat_region 2685 2741 . ? . description=trf scaffold_2385 . repeat_region 3004 3035 . ? . description=trf scaffold_2385 ensembl protein_coding_gene 222 660 . - . ID=Phyra87685;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2385000001;logic_name=jgi_phyra1 scaffold_2385 ensembl transcript 222 660 . - . ID=Phyra87685;Parent=Phyra87685;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2385 . CDS 222 254 . - 0 ID=Phyra87685;Parent=Phyra87685;rank=3 scaffold_2385 . exon 222 254 . - . ID=Phyra87685.3;Parent=Phyra87685;constitutive=1;rank=3 scaffold_2385 . CDS 320 429 . - 0 ID=Phyra87685;Parent=Phyra87685;rank=2 scaffold_2385 . exon 320 429 . - . ID=Phyra87685.2;Parent=Phyra87685;constitutive=1;ensembl_phase=1;rank=2 scaffold_2385 . CDS 477 660 . - 0 ID=Phyra87685;Parent=Phyra87685;rank=1 scaffold_2385 . exon 477 660 . - . ID=Phyra87685.1;Parent=Phyra87685;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2379 1 3330 scaffold_2379 . repeat_region 381 403 . ? . description=dust scaffold_2379 . repeat_region 946 1745 . ? . description=dust scaffold_2379 ensembl protein_coding_gene 410 3180 . + . ID=Phyra87684;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2379000001;logic_name=jgi_phyra1 scaffold_2379 ensembl transcript 410 3180 . + . ID=Phyra87684;Parent=Phyra87684;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2379 . CDS 410 732 . + 0 ID=Phyra87684;Parent=Phyra87684;rank=1 scaffold_2379 . exon 410 732 . + . ID=Phyra87684.1;Parent=Phyra87684;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2379 . CDS 801 935 . + 0 ID=Phyra87684;Parent=Phyra87684;rank=2 scaffold_2379 . exon 801 935 . + . ID=Phyra87684.2;Parent=Phyra87684;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2379 . CDS 1946 2317 . + 0 ID=Phyra87684;Parent=Phyra87684;rank=3 scaffold_2379 . exon 1946 2317 . + . ID=Phyra87684.3;Parent=Phyra87684;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_2379 . CDS 2388 2725 . + 0 ID=Phyra87684;Parent=Phyra87684;rank=4 scaffold_2379 . exon 2388 2725 . + . ID=Phyra87684.4;Parent=Phyra87684;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_2379 . CDS 2801 3180 . + 0 ID=Phyra87684;Parent=Phyra87684;rank=5 scaffold_2379 . exon 2801 3180 . + . ID=Phyra87684.5;Parent=Phyra87684;constitutive=1;ensembl_phase=1;rank=5 ##gff-version 3 ##sequence-region scaffold_2448 1 3330 scaffold_2448 . repeat_region 244 274 . ? . description=trf scaffold_2448 . repeat_region 244 274 . ? . description=trf scaffold_2448 . repeat_region 244 274 . ? . description=dust scaffold_2448 . repeat_region 1271 2062 . ? . description=dust scaffold_2448 . repeat_region 2673 2715 . ? . description=trf scaffold_2448 . repeat_region 2814 2860 . ? . description=trf scaffold_2448 . repeat_region 3284 3325 . ? . description=trf scaffold_2448 ensembl protein_coding_gene 1 2622 . + . ID=Phyra87709;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2448000001;logic_name=jgi_phyra1 scaffold_2448 ensembl transcript 1 2622 . + . ID=Phyra87709;Parent=Phyra87709;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2448 . CDS 1 1253 . + 0 ID=Phyra87709;Parent=Phyra87709;rank=1 scaffold_2448 . exon 1 1253 . + . ID=Phyra87709.1;Parent=Phyra87709;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2448 . CDS 2142 2622 . + 0 ID=Phyra87709;Parent=Phyra87709;rank=2 scaffold_2448 . exon 2142 2622 . + . ID=Phyra87709.2;Parent=Phyra87709;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_2376 1 3331 scaffold_2376 . repeat_region 1383 2459 . ? . description=dust scaffold_2376 . repeat_region 2802 2844 . ? . description=trf scaffold_2376 ensembl protein_coding_gene 2970 3326 . - . ID=Phyra45307;biotype=protein_coding;external_name=gwEuk.2376.5.1;logic_name=jgi_phyra1 scaffold_2376 ensembl transcript 2970 3326 . - . ID=Phyra45307;Parent=Phyra45307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2376 . CDS 2970 3326 . - 0 ID=Phyra45307;Parent=Phyra45307;rank=1 scaffold_2376 . exon 2970 3326 . - . ID=Phyra45307.1;Parent=Phyra45307;constitutive=1;rank=1 scaffold_2376 ensembl protein_coding_gene 3 536 . + . ID=Phyra45312;biotype=protein_coding;external_name=gwEuk.2376.10.1;logic_name=jgi_phyra1 scaffold_2376 ensembl transcript 3 536 . + . ID=Phyra45312;Parent=Phyra45312;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2376 . CDS 3 536 . + 0 ID=Phyra45312;Parent=Phyra45312;rank=1 scaffold_2376 . exon 3 536 . + . ID=Phyra45312.1;Parent=Phyra45312;constitutive=1;rank=1 scaffold_2376 ensembl protein_coding_gene 905 1351 . + . ID=Phyra45313;biotype=protein_coding;external_name=gwEuk.2376.11.1;logic_name=jgi_phyra1 scaffold_2376 ensembl transcript 905 1351 . + . ID=Phyra45313;Parent=Phyra45313;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2376 . CDS 905 1351 . + 0 ID=Phyra45313;Parent=Phyra45313;rank=1 scaffold_2376 . exon 905 1351 . + . ID=Phyra45313.1;Parent=Phyra45313;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2377 1 3331 scaffold_2377 . repeat_region 58 850 . + . description=Gypsy-2-I_PI-int scaffold_2377 . repeat_region 1006 2294 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2378 1 3331 scaffold_2378 . repeat_region 1642 1766 . ? . description=dust scaffold_2378 . repeat_region 2021 2077 . ? . description=trf scaffold_2378 . repeat_region 3238 3283 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2375 1 3332 scaffold_2375 . repeat_region 1218 2322 . ? . description=dust scaffold_2375 . biological_region 2404 2409 0.999 - . logic_name=eponine scaffold_2375 . biological_region 2499 2500 0.999 + . logic_name=eponine scaffold_2375 . biological_region 2590 2593 0.999 - . logic_name=eponine scaffold_2375 . repeat_region 3282 3304 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1899 1 3333 scaffold_1899 . repeat_region 166 190 . ? . description=dust scaffold_1899 . biological_region 880 883 0.999 + . logic_name=eponine scaffold_1899 . biological_region 973 974 0.999 - . logic_name=eponine scaffold_1899 . biological_region 1063 1068 0.999 + . logic_name=eponine scaffold_1899 . biological_region 2122 2127 0.999 + . logic_name=eponine scaffold_1899 . biological_region 2180 2183 0.999 + . logic_name=eponine scaffold_1899 . biological_region 2216 2220 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2370 1 3335 scaffold_2370 . repeat_region 919 2042 . ? . description=dust scaffold_2370 ensembl protein_coding_gene 2748 3296 . + . ID=Phyra87678;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2370000001;logic_name=jgi_phyra1 scaffold_2370 ensembl transcript 2748 3296 . + . ID=Phyra87678;Parent=Phyra87678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2370 . CDS 2748 3296 . + 0 ID=Phyra87678;Parent=Phyra87678;rank=1 scaffold_2370 . exon 2748 3296 . + . ID=Phyra87678.1;Parent=Phyra87678;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2369 1 3336 scaffold_2369 . repeat_region 971 2255 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2368 1 3339 scaffold_2368 . biological_region 2386 2387 0.999 + . logic_name=eponine scaffold_2368 ensembl protein_coding_gene 289 733 . + . ID=Phyra87676;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2368000001;logic_name=jgi_phyra1 scaffold_2368 ensembl transcript 289 733 . + . ID=Phyra87676;Parent=Phyra87676;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2368 . CDS 289 293 . + 0 ID=Phyra87676;Parent=Phyra87676;rank=1 scaffold_2368 . exon 289 293 . + . ID=Phyra87676.1;Parent=Phyra87676;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2368 . CDS 355 733 . + 0 ID=Phyra87676;Parent=Phyra87676;rank=2 scaffold_2368 . exon 355 733 . + . ID=Phyra87676.2;Parent=Phyra87676;constitutive=1;ensembl_phase=2;rank=2 scaffold_2368 ensembl protein_coding_gene 1241 2140 . - . ID=Phyra87677;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2368000002;logic_name=jgi_phyra1 scaffold_2368 ensembl transcript 1241 2140 . - . ID=Phyra87677;Parent=Phyra87677;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2368 . CDS 1241 2140 . - 0 ID=Phyra87677;Parent=Phyra87677;rank=1 scaffold_2368 . exon 1241 2140 . - . ID=Phyra87677.1;Parent=Phyra87677;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2362 1 3340 scaffold_2362 . repeat_region 1013 2058 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2364 1 3340 scaffold_2364 . repeat_region 96 142 . ? . description=trf scaffold_2364 . repeat_region 1106 2346 . ? . description=dust scaffold_2364 . repeat_region 2489 2531 . ? . description=trf scaffold_2364 . repeat_region 2630 2676 . ? . description=trf scaffold_2364 ensembl protein_coding_gene 546 1103 . + . ID=Phyra45277;biotype=protein_coding;external_name=gwEuk.2364.5.1;logic_name=jgi_phyra1 scaffold_2364 ensembl transcript 546 1103 . + . ID=Phyra45277;Parent=Phyra45277;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2364 . CDS 546 1103 . + 0 ID=Phyra45277;Parent=Phyra45277;rank=1 scaffold_2364 . exon 546 1103 . + . ID=Phyra45277.1;Parent=Phyra45277;constitutive=1;rank=1 scaffold_2364 ensembl protein_coding_gene 51 522 . + . ID=Phyra87672;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2364000001;logic_name=jgi_phyra1 scaffold_2364 ensembl transcript 51 522 . + . ID=Phyra87672;Parent=Phyra87672;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2364 . CDS 51 100 . + 0 ID=Phyra87672;Parent=Phyra87672;rank=1 scaffold_2364 . exon 51 100 . + . ID=Phyra87672.1;Parent=Phyra87672;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2364 . CDS 242 485 . + 0 ID=Phyra87672;Parent=Phyra87672;rank=2 scaffold_2364 . exon 242 485 . + . ID=Phyra87672.2;Parent=Phyra87672;constitutive=1;ensembl_phase=2;rank=2 scaffold_2364 . CDS 508 522 . + 0 ID=Phyra87672;Parent=Phyra87672;rank=3 scaffold_2364 . exon 508 522 . + . ID=Phyra87672.3;Parent=Phyra87672;constitutive=1;rank=3 scaffold_2364 ensembl protein_coding_gene 2705 3283 . - . ID=Phyra87673;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2364000002;logic_name=jgi_phyra1 scaffold_2364 ensembl transcript 2705 3283 . - . ID=Phyra87673;Parent=Phyra87673;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2364 . CDS 2705 2712 . - 0 ID=Phyra87673;Parent=Phyra87673;rank=2 scaffold_2364 . exon 2705 2712 . - . ID=Phyra87673.2;Parent=Phyra87673;constitutive=1;ensembl_phase=1;rank=2 scaffold_2364 . CDS 2815 3283 . - 0 ID=Phyra87673;Parent=Phyra87673;rank=1 scaffold_2364 . exon 2815 3283 . - . ID=Phyra87673.1;Parent=Phyra87673;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2365 1 3342 scaffold_2365 . repeat_region 1150 2254 . ? . description=dust scaffold_2365 . biological_region 2477 2478 0.999 - . logic_name=eponine scaffold_2365 . biological_region 2595 2596 0.999 + . logic_name=eponine scaffold_2365 . biological_region 2743 2745 0.999 - . logic_name=eponine scaffold_2365 . biological_region 3147 3153 0.999 + . logic_name=eponine scaffold_2365 . repeat_region 3268 3298 . ? . description=trf scaffold_2365 . biological_region 3270 3276 0.999 - . logic_name=eponine scaffold_2365 . biological_region 3281 3284 0.999 + . logic_name=eponine scaffold_2365 . biological_region 3308 3314 0.999 - . logic_name=eponine scaffold_2365 ensembl protein_coding_gene 2270 2836 . + . ID=Phyra87674;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2365000001;logic_name=jgi_phyra1 scaffold_2365 ensembl transcript 2270 2836 . + . ID=Phyra87674;Parent=Phyra87674;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2365 . CDS 2270 2836 . + 0 ID=Phyra87674;Parent=Phyra87674;rank=1 scaffold_2365 . exon 2270 2836 . + . ID=Phyra87674.1;Parent=Phyra87674;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2356 1 3344 scaffold_2356 . repeat_region 1111 2179 . ? . description=dust scaffold_2356 ensembl protein_coding_gene 33 596 . - . ID=Phyra87669;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2356000001;logic_name=jgi_phyra1 scaffold_2356 ensembl transcript 33 596 . - . ID=Phyra87669;Parent=Phyra87669;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2356 . CDS 33 596 . - 0 ID=Phyra87669;Parent=Phyra87669;rank=1 scaffold_2356 . exon 33 596 . - . ID=Phyra87669.1;Parent=Phyra87669;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2355 1 3345 scaffold_2355 . repeat_region 7 671 . - . description=GypsyPi-1c_I-int scaffold_2355 . biological_region 631 637 0.999 + . logic_name=eponine scaffold_2355 . repeat_region 1010 1313 . - . description=GypsyPi-1c_I-int scaffold_2355 . repeat_region 1338 2507 . ? . description=dust scaffold_2355 . repeat_region 2799 2951 . ? . description=trf scaffold_2355 ensembl protein_coding_gene 26 3341 . - . ID=Phyra87668;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2355000001;logic_name=jgi_phyra1 scaffold_2355 ensembl transcript 26 3341 . - . ID=Phyra87668;Parent=Phyra87668;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2355 . CDS 26 1331 . - 0 ID=Phyra87668;Parent=Phyra87668;rank=2 scaffold_2355 . exon 26 1331 . - . ID=Phyra87668.2;Parent=Phyra87668;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2355 . CDS 2592 3341 . - 0 ID=Phyra87668;Parent=Phyra87668;rank=1 scaffold_2355 . exon 2592 3341 . - . ID=Phyra87668.1;Parent=Phyra87668;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2359 1 3345 scaffold_2359 . repeat_region 125 136 . ? . description=dust scaffold_2359 . repeat_region 925 945 . ? . description=dust scaffold_2359 . repeat_region 1219 2389 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2352 1 3346 scaffold_2352 . repeat_region 1025 2285 . ? . description=dust scaffold_2352 ensembl tRNA_gene 787 866 . + . ID=EPrPRAG00000000007;biotype=tRNA;description=tRNA-Leu for anticodon AAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_2352 ensembl transcript 787 866 . + . ID=EPrPRAT00000000007;Parent=EPrPRAG00000000007;biotype=tRNA;logic_name=ncrna_eg scaffold_2352 ensembl tRNA_gene 33 112 . + . ID=EPrPRAG00000000119;biotype=tRNA;description=tRNA-Leu for anticodon AAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_2352 ensembl transcript 33 112 . + . ID=EPrPRAT00000000119;Parent=EPrPRAG00000000119;biotype=tRNA;logic_name=ncrna_eg scaffold_2352 . exon 787 866 . + . ID=EPrPRAE00000000007;Parent=EPrPRAT00000000007;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2352 . exon 33 112 . + . ID=EPrPRAE00000000119;Parent=EPrPRAT00000000119;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2352 ensembl protein_coding_gene 2291 3301 . + . ID=Phyra87666;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2352000001;logic_name=jgi_phyra1 scaffold_2352 ensembl transcript 2291 3301 . + . ID=Phyra87666;Parent=Phyra87666;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2352 . CDS 2291 3301 . + 0 ID=Phyra87666;Parent=Phyra87666;rank=1 scaffold_2352 . exon 2291 3301 . + . ID=Phyra87666.1;Parent=Phyra87666;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2172 1 3347 scaffold_2172 . repeat_region 1619 1629 . ? . description=dust scaffold_2172 ensembl protein_coding_gene 61 891 . - . ID=Phyra87565;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2172000001;logic_name=jgi_phyra1 scaffold_2172 ensembl transcript 61 891 . - . ID=Phyra87565;Parent=Phyra87565;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2172 . CDS 61 891 . - 0 ID=Phyra87565;Parent=Phyra87565;rank=1 scaffold_2172 . exon 61 891 . - . ID=Phyra87565.1;Parent=Phyra87565;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2354 1 3347 scaffold_2354 . repeat_region 1025 1881 . ? . description=dust scaffold_2354 . biological_region 1932 1934 0.999 - . logic_name=eponine scaffold_2354 . biological_region 2271 2275 0.999 + . logic_name=eponine scaffold_2354 . biological_region 2667 2669 0.999 + . logic_name=eponine scaffold_2354 . biological_region 3027 3031 0.999 + . logic_name=eponine scaffold_2354 ensembl protein_coding_gene 836 3331 . - . ID=Phyra87667;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2354000001;logic_name=jgi_phyra1 scaffold_2354 ensembl transcript 836 3331 . - . ID=Phyra87667;Parent=Phyra87667;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2354 . CDS 836 888 . - 0 ID=Phyra87667;Parent=Phyra87667;rank=2 scaffold_2354 . exon 836 888 . - . ID=Phyra87667.2;Parent=Phyra87667;constitutive=1;ensembl_phase=1;rank=2 scaffold_2354 . CDS 1982 3329 . - 0 ID=Phyra87667;Parent=Phyra87667;rank=1 scaffold_2354 . exon 1982 3331 . - . ID=Phyra87667.1;Parent=Phyra87667;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2350 1 3349 scaffold_2350 . repeat_region 813 2075 . ? . description=dust scaffold_2350 ensembl protein_coding_gene 33 571 . - . ID=Phyra87664;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2350000001;logic_name=jgi_phyra1 scaffold_2350 ensembl transcript 33 571 . - . ID=Phyra87664;Parent=Phyra87664;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2350 . CDS 33 571 . - 0 ID=Phyra87664;Parent=Phyra87664;rank=1 scaffold_2350 . exon 33 571 . - . ID=Phyra87664.1;Parent=Phyra87664;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2350 ensembl protein_coding_gene 2256 3305 . + . ID=Phyra87665;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2350000002;logic_name=jgi_phyra1 scaffold_2350 ensembl transcript 2256 3305 . + . ID=Phyra87665;Parent=Phyra87665;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2350 . CDS 2256 3305 . + 0 ID=Phyra87665;Parent=Phyra87665;rank=1 scaffold_2350 . exon 2256 3305 . + . ID=Phyra87665.1;Parent=Phyra87665;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2348 1 3350 scaffold_2348 . repeat_region 957 980 . ? . description=trf scaffold_2348 . repeat_region 957 980 . ? . description=dust scaffold_2348 . repeat_region 1141 2341 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2341 1 3354 scaffold_2341 . repeat_region 1271 2004 . ? . description=dust scaffold_2341 . biological_region 2190 2194 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2345 1 3354 scaffold_2345 . repeat_region 993 2164 . ? . description=dust scaffold_2345 . repeat_region 2202 2279 . ? . description=dust scaffold_2345 . repeat_region 2209 2253 . ? . description=trf scaffold_2345 . repeat_region 2209 2263 . ? . description=trf scaffold_2345 . repeat_region 2384 2416 . ? . description=trf scaffold_2345 . repeat_region 2384 2421 . ? . description=trf scaffold_2345 . repeat_region 2492 2609 . ? . description=trf scaffold_2345 . repeat_region 2510 2605 . ? . description=dust scaffold_2345 . repeat_region 2824 2871 . ? . description=trf scaffold_2345 . repeat_region 2830 2876 . ? . description=dust scaffold_2345 . repeat_region 2959 3036 . ? . description=dust scaffold_2345 . repeat_region 2966 3010 . ? . description=trf scaffold_2345 . repeat_region 2966 3020 . ? . description=trf scaffold_2345 . repeat_region 3141 3173 . ? . description=trf scaffold_2345 . repeat_region 3141 3178 . ? . description=trf scaffold_2345 . repeat_region 3248 3341 . ? . description=dust scaffold_2345 . repeat_region 3249 3354 . ? . description=trf scaffold_2345 ensembl tRNA_gene 3066 3138 . + . ID=EPrPRAG00000000058;biotype=tRNA;description=tRNA-Glu for anticodon UUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_2345 ensembl transcript 3066 3138 . + . ID=EPrPRAT00000000058;Parent=EPrPRAG00000000058;biotype=tRNA;logic_name=ncrna_eg scaffold_2345 ensembl tRNA_gene 2309 2381 . + . ID=EPrPRAG00000000077;biotype=tRNA;description=tRNA-Glu for anticodon UUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_2345 ensembl transcript 2309 2381 . + . ID=EPrPRAT00000000077;Parent=EPrPRAG00000000077;biotype=tRNA;logic_name=ncrna_eg scaffold_2345 . exon 3066 3138 . + . ID=EPrPRAE00000000058;Parent=EPrPRAT00000000058;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2345 . exon 2309 2381 . + . ID=EPrPRAE00000000077;Parent=EPrPRAT00000000077;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2346 1 3355 scaffold_2346 . repeat_region 1152 2492 . ? . description=dust scaffold_2346 ensembl protein_coding_gene 34 1005 . - . ID=Phyra87663;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2346000001;logic_name=jgi_phyra1 scaffold_2346 ensembl transcript 34 1005 . - . ID=Phyra87663;Parent=Phyra87663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2346 . CDS 34 1005 . - 0 ID=Phyra87663;Parent=Phyra87663;rank=1 scaffold_2346 . exon 34 1005 . - . ID=Phyra87663.1;Parent=Phyra87663;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2399 1 3356 scaffold_2399 . repeat_region 1007 2258 . ? . description=dust scaffold_2399 . biological_region 2641 2643 0.999 - . logic_name=eponine scaffold_2399 . repeat_region 3288 3330 . ? . description=trf scaffold_2399 ensembl protein_coding_gene 19 3029 . - . ID=Phyra87687;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2399000001;logic_name=jgi_phyra1 scaffold_2399 ensembl transcript 19 3029 . - . ID=Phyra87687;Parent=Phyra87687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2399 . CDS 19 962 . - 0 ID=Phyra87687;Parent=Phyra87687;rank=2 scaffold_2399 . exon 19 962 . - . ID=Phyra87687.2;Parent=Phyra87687;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2399 . CDS 2275 3027 . - 0 ID=Phyra87687;Parent=Phyra87687;rank=1 scaffold_2399 . exon 2275 3029 . - . ID=Phyra87687.1;Parent=Phyra87687;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2342 1 3357 scaffold_2342 . repeat_region 1086 2254 . ? . description=dust scaffold_2342 . biological_region 2926 2926 0.999 + . logic_name=eponine scaffold_2342 . biological_region 2961 2964 0.999 - . logic_name=eponine scaffold_2342 ensembl protein_coding_gene 10 3334 . + . ID=Phyra87661;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2342000001;logic_name=jgi_phyra1 scaffold_2342 ensembl transcript 10 3334 . + . ID=Phyra87661;Parent=Phyra87661;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2342 . CDS 10 1075 . + 0 ID=Phyra87661;Parent=Phyra87661;rank=1 scaffold_2342 . exon 10 1075 . + . ID=Phyra87661.1;Parent=Phyra87661;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2342 . CDS 2348 3334 . + 0 ID=Phyra87661;Parent=Phyra87661;rank=2 scaffold_2342 . exon 2348 3334 . + . ID=Phyra87661.2;Parent=Phyra87661;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2392 1 3357 scaffold_2392 . repeat_region 1079 2161 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2340 1 3358 scaffold_2340 . repeat_region 1236 2447 . ? . description=dust scaffold_2340 ensembl protein_coding_gene 283 789 . - . ID=Phyra87660;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2340000001;logic_name=jgi_phyra1 scaffold_2340 ensembl transcript 283 789 . - . ID=Phyra87660;Parent=Phyra87660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2340 . CDS 283 789 . - 0 ID=Phyra87660;Parent=Phyra87660;rank=1 scaffold_2340 . exon 283 789 . - . ID=Phyra87660.1;Parent=Phyra87660;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2336 1 3359 scaffold_2336 . repeat_region 25 67 . ? . description=trf scaffold_2336 . repeat_region 166 212 . ? . description=trf scaffold_2336 . biological_region 1045 1049 0.999 + . logic_name=eponine scaffold_2336 . repeat_region 1172 2241 . ? . description=dust scaffold_2336 . repeat_region 2742 2762 . ? . description=trf scaffold_2336 ensembl protein_coding_gene 300 3344 . + . ID=Phyra87657;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2336000001;logic_name=jgi_phyra1 scaffold_2336 ensembl transcript 300 3344 . + . ID=Phyra87657;Parent=Phyra87657;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2336 . CDS 300 1166 . + 0 ID=Phyra87657;Parent=Phyra87657;rank=1 scaffold_2336 . exon 300 1166 . + . ID=Phyra87657.1;Parent=Phyra87657;constitutive=1;rank=1 scaffold_2336 . CDS 2292 3344 . + 0 ID=Phyra87657;Parent=Phyra87657;rank=2 scaffold_2336 . exon 2292 3344 . + . ID=Phyra87657.2;Parent=Phyra87657;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2360 1 3359 scaffold_2360 . repeat_region 1138 2368 . ? . description=dust scaffold_2360 ensembl protein_coding_gene 111 997 . - . ID=Phyra87670;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2360000001;logic_name=jgi_phyra1 scaffold_2360 ensembl transcript 111 997 . - . ID=Phyra87670;Parent=Phyra87670;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2360 . CDS 111 136 . - 0 ID=Phyra87670;Parent=Phyra87670;rank=2 scaffold_2360 . exon 111 136 . - . ID=Phyra87670.2;Parent=Phyra87670;constitutive=1;ensembl_phase=1;rank=2 scaffold_2360 . CDS 208 997 . - 0 ID=Phyra87670;Parent=Phyra87670;rank=1 scaffold_2360 . exon 208 997 . - . ID=Phyra87670.1;Parent=Phyra87670;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2335 1 3360 scaffold_2335 . biological_region 416 418 0.999 + . logic_name=eponine scaffold_2335 . repeat_region 740 751 . ? . description=dust scaffold_2335 . repeat_region 1628 2162 . ? . description=dust scaffold_2335 . repeat_region 2493 2516 . ? . description=trf scaffold_2335 . repeat_region 2497 2516 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2334 1 3361 scaffold_2334 . repeat_region 917 952 . ? . description=trf scaffold_2334 . repeat_region 1304 1996 . ? . description=dust scaffold_2334 . repeat_region 2488 2530 . ? . description=dust scaffold_2334 . repeat_region 2787 2813 . ? . description=trf scaffold_2334 . repeat_region 2787 2815 . ? . description=dust scaffold_2334 . repeat_region 3121 3164 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2328 1 3362 scaffold_2328 . biological_region 890 892 0.999 - . logic_name=eponine scaffold_2328 . biological_region 935 936 0.999 - . logic_name=eponine scaffold_2328 . biological_region 1132 1136 0.999 + . logic_name=eponine scaffold_2328 . biological_region 1143 1148 0.999 + . logic_name=eponine scaffold_2328 . repeat_region 1724 2320 . ? . description=dust scaffold_2328 ensembl protein_coding_gene 728 1627 . + . ID=Phyra87652;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2328000001;logic_name=jgi_phyra1 scaffold_2328 ensembl transcript 728 1627 . + . ID=Phyra87652;Parent=Phyra87652;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2328 . CDS 728 1627 . + 0 ID=Phyra87652;Parent=Phyra87652;rank=1 scaffold_2328 . exon 728 1627 . + . ID=Phyra87652.1;Parent=Phyra87652;constitutive=1;rank=1 scaffold_2328 ensembl protein_coding_gene 2408 2719 . + . ID=Phyra87653;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2328000002;logic_name=jgi_phyra1 scaffold_2328 ensembl transcript 2408 2719 . + . ID=Phyra87653;Parent=Phyra87653;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2328 . CDS 2408 2719 . + 0 ID=Phyra87653;Parent=Phyra87653;rank=1 scaffold_2328 . exon 2408 2719 . + . ID=Phyra87653.1;Parent=Phyra87653;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2332 1 3362 scaffold_2332 . repeat_region 25 55 . ? . description=trf scaffold_2332 . biological_region 144 144 0.999 - . logic_name=eponine scaffold_2332 . biological_region 167 171 0.999 - . logic_name=eponine scaffold_2332 . repeat_region 1118 1779 . ? . description=dust scaffold_2332 . repeat_region 2136 2178 . ? . description=trf scaffold_2332 ensembl protein_coding_gene 11 2042 . + . ID=Phyra87656;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2332000001;logic_name=jgi_phyra1 scaffold_2332 ensembl transcript 11 2042 . + . ID=Phyra87656;Parent=Phyra87656;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2332 . exon 11 1059 . + . ID=Phyra87656.1;Parent=Phyra87656;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2332 . CDS 13 1059 . + 0 ID=Phyra87656;Parent=Phyra87656;rank=1 scaffold_2332 . CDS 1824 2042 . + 0 ID=Phyra87656;Parent=Phyra87656;rank=2 scaffold_2332 . exon 1824 2042 . + . ID=Phyra87656.2;Parent=Phyra87656;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2343 1 3363 scaffold_2343 . repeat_region 438 465 . ? . description=trf scaffold_2343 . repeat_region 438 468 . ? . description=dust scaffold_2343 . biological_region 722 724 0.999 - . logic_name=eponine scaffold_2343 . repeat_region 1023 2154 . ? . description=dust scaffold_2343 . repeat_region 3104 3146 . ? . description=trf scaffold_2343 ensembl protein_coding_gene 14 2872 . - . ID=Phyra87662;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2343000001;logic_name=jgi_phyra1 scaffold_2343 ensembl transcript 14 2872 . - . ID=Phyra87662;Parent=Phyra87662;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2343 . CDS 14 984 . - 0 ID=Phyra87662;Parent=Phyra87662;rank=2 scaffold_2343 . exon 14 984 . - . ID=Phyra87662.2;Parent=Phyra87662;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2343 . CDS 2159 2872 . - 0 ID=Phyra87662;Parent=Phyra87662;rank=1 scaffold_2343 . exon 2159 2872 . - . ID=Phyra87662.1;Parent=Phyra87662;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2373 1 3364 scaffold_2373 . repeat_region 521 563 . ? . description=trf scaffold_2373 . repeat_region 662 708 . ? . description=trf scaffold_2373 . repeat_region 1118 2244 . ? . description=dust scaffold_2373 . repeat_region 2986 3028 . ? . description=trf scaffold_2373 ensembl protein_coding_gene 9 395 . + . ID=Phyra45298;biotype=protein_coding;external_name=gwEuk.2373.3.1;logic_name=jgi_phyra1 scaffold_2373 ensembl transcript 9 395 . + . ID=Phyra45298;Parent=Phyra45298;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2373 . CDS 9 395 . + 0 ID=Phyra45298;Parent=Phyra45298;rank=1 scaffold_2373 . exon 9 395 . + . ID=Phyra45298.1;Parent=Phyra45298;constitutive=1;rank=1 scaffold_2373 ensembl protein_coding_gene 772 2725 . - . ID=Phyra87680;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2373000002;logic_name=jgi_phyra1 scaffold_2373 ensembl transcript 772 2725 . - . ID=Phyra87680;Parent=Phyra87680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2373 . CDS 772 1052 . - 0 ID=Phyra87680;Parent=Phyra87680;rank=2 scaffold_2373 . exon 772 1052 . - . ID=Phyra87680.2;Parent=Phyra87680;constitutive=1;ensembl_phase=1;rank=2 scaffold_2373 . CDS 2275 2725 . - 0 ID=Phyra87680;Parent=Phyra87680;rank=1 scaffold_2373 . exon 2275 2725 . - . ID=Phyra87680.1;Parent=Phyra87680;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2330 1 3365 scaffold_2330 . biological_region 53 58 0.999 + . logic_name=eponine scaffold_2330 . biological_region 186 187 0.999 - . logic_name=eponine scaffold_2330 . biological_region 767 771 0.999 + . logic_name=eponine scaffold_2330 . repeat_region 834 913 . ? . description=trf scaffold_2330 . repeat_region 1302 2335 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2326 1 3366 scaffold_2326 . biological_region 444 450 0.999 + . logic_name=eponine scaffold_2326 . repeat_region 512 583 . ? . description=trf scaffold_2326 . biological_region 940 945 0.999 - . logic_name=eponine scaffold_2326 . repeat_region 1301 2380 . ? . description=dust scaffold_2326 ensembl protein_coding_gene 81 1169 . + . ID=Phyra87651;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2326000001;logic_name=jgi_phyra1 scaffold_2326 ensembl transcript 81 1169 . + . ID=Phyra87651;Parent=Phyra87651;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2326 . CDS 81 1169 . + 0 ID=Phyra87651;Parent=Phyra87651;rank=1 scaffold_2326 . exon 81 1169 . + . ID=Phyra87651.1;Parent=Phyra87651;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2322 1 3367 scaffold_2322 . repeat_region 1108 1119 . ? . description=dust scaffold_2322 . repeat_region 1195 2533 . ? . description=dust scaffold_2322 . biological_region 2619 2623 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2452 1 3367 scaffold_2452 . repeat_region 1190 2495 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2324 1 3368 scaffold_2324 . repeat_region 1532 2522 . ? . description=dust scaffold_2324 ensembl protein_coding_gene 1 3027 . + . ID=Phyra87650;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2324000001;logic_name=jgi_phyra1 scaffold_2324 ensembl transcript 1 3027 . + . ID=Phyra87650;Parent=Phyra87650;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2324 . exon 1 1484 . + . ID=Phyra87650.1;Parent=Phyra87650;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2324 . CDS 3 1484 . + 0 ID=Phyra87650;Parent=Phyra87650;rank=1 scaffold_2324 . CDS 2533 3027 . + 0 ID=Phyra87650;Parent=Phyra87650;rank=2 scaffold_2324 . exon 2533 3027 . + . ID=Phyra87650.2;Parent=Phyra87650;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2320 1 3369 scaffold_2320 . repeat_region 939 2087 . ? . description=dust scaffold_2320 . repeat_region 2389 3369 . + . description=GypsyPi-1c_I-int scaffold_2320 ensembl protein_coding_gene 2204 3343 . + . ID=Phyra87648;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2320000001;logic_name=jgi_phyra1 scaffold_2320 ensembl transcript 2204 3343 . + . ID=Phyra87648;Parent=Phyra87648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2320 . CDS 2204 3343 . + 0 ID=Phyra87648;Parent=Phyra87648;rank=1 scaffold_2320 . exon 2204 3343 . + . ID=Phyra87648.1;Parent=Phyra87648;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2323 1 3369 scaffold_2323 . repeat_region 859 2136 . ? . description=dust scaffold_2323 . repeat_region 2695 2936 . + . description=Sola3-2_PS scaffold_2323 . biological_region 2932 2934 0.999 - . logic_name=eponine scaffold_2323 ensembl protein_coding_gene 2450 3351 . + . ID=Phyra87649;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2323000001;logic_name=jgi_phyra1 scaffold_2323 ensembl transcript 2450 3351 . + . ID=Phyra87649;Parent=Phyra87649;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2323 . CDS 2450 2459 . + 0 ID=Phyra87649;Parent=Phyra87649;rank=1 scaffold_2323 . exon 2450 2459 . + . ID=Phyra87649.1;Parent=Phyra87649;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2323 . CDS 2699 3351 . + 0 ID=Phyra87649;Parent=Phyra87649;rank=2 scaffold_2323 . exon 2699 3351 . + . ID=Phyra87649.2;Parent=Phyra87649;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2317 1 3370 scaffold_2317 . repeat_region 1040 2381 . ? . description=dust scaffold_2317 . repeat_region 3285 3293 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2321 1 3370 scaffold_2321 . repeat_region 1320 2535 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2367 1 3370 scaffold_2367 . repeat_region 211 253 . ? . description=trf scaffold_2367 . repeat_region 1291 2349 . ? . description=dust scaffold_2367 ensembl protein_coding_gene 565 822 . + . ID=Phyra45291;biotype=protein_coding;external_name=gwEuk.2367.14.1;logic_name=jgi_phyra1 scaffold_2367 ensembl transcript 565 822 . + . ID=Phyra45291;Parent=Phyra45291;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2367 . CDS 565 822 . + 0 ID=Phyra45291;Parent=Phyra45291;rank=1 scaffold_2367 . exon 565 822 . + . ID=Phyra45291.1;Parent=Phyra45291;constitutive=1;rank=1 scaffold_2367 ensembl protein_coding_gene 975 3336 . - . ID=Phyra87675;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2367000001;logic_name=jgi_phyra1 scaffold_2367 ensembl transcript 975 3336 . - . ID=Phyra87675;Parent=Phyra87675;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2367 . CDS 975 1053 . - 0 ID=Phyra87675;Parent=Phyra87675;rank=2 scaffold_2367 . exon 975 1053 . - . ID=Phyra87675.2;Parent=Phyra87675;constitutive=1;ensembl_phase=2;rank=2 scaffold_2367 . CDS 2369 3336 . - 0 ID=Phyra87675;Parent=Phyra87675;rank=1 scaffold_2367 . exon 2369 3336 . - . ID=Phyra87675.1;Parent=Phyra87675;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2313 1 3371 scaffold_2313 . repeat_region 369 399 . ? . description=trf scaffold_2313 . biological_region 487 489 0.999 - . logic_name=eponine scaffold_2313 . biological_region 511 515 0.999 - . logic_name=eponine scaffold_2313 . repeat_region 880 920 . ? . description=trf scaffold_2313 . repeat_region 949 991 . ? . description=trf scaffold_2313 . repeat_region 1213 2259 . ? . description=dust scaffold_2313 . repeat_region 2658 2703 . ? . description=trf scaffold_2313 ensembl protein_coding_gene 2260 2574 . - . ID=Phyra45211;biotype=protein_coding;external_name=gwEuk.2313.4.1;logic_name=jgi_phyra1 scaffold_2313 ensembl transcript 2260 2574 . - . ID=Phyra45211;Parent=Phyra45211;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2313 . CDS 2260 2574 . - 0 ID=Phyra45211;Parent=Phyra45211;rank=1 scaffold_2313 . exon 2260 2574 . - . ID=Phyra45211.1;Parent=Phyra45211;constitutive=1;rank=1 scaffold_2313 ensembl protein_coding_gene 42 761 . + . ID=Phyra87645;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2313000001;logic_name=jgi_phyra1 scaffold_2313 ensembl transcript 42 761 . + . ID=Phyra87645;Parent=Phyra87645;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2313 . CDS 42 761 . + 0 ID=Phyra87645;Parent=Phyra87645;rank=1 scaffold_2313 . exon 42 761 . + . ID=Phyra87645.1;Parent=Phyra87645;constitutive=1;rank=1 scaffold_2313 ensembl protein_coding_gene 2997 3365 . + . ID=Phyra87646;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2313000002;logic_name=jgi_phyra1 scaffold_2313 ensembl transcript 2997 3365 . + . ID=Phyra87646;Parent=Phyra87646;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2313 . CDS 2997 3365 . + 0 ID=Phyra87646;Parent=Phyra87646;rank=1 scaffold_2313 . exon 2997 3365 . + . ID=Phyra87646.1;Parent=Phyra87646;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2318 1 3371 scaffold_2318 . repeat_region 1355 2280 . ? . description=dust scaffold_2318 ensembl protein_coding_gene 19 3290 . - . ID=Phyra87647;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2318000001;logic_name=jgi_phyra1 scaffold_2318 ensembl transcript 19 3290 . - . ID=Phyra87647;Parent=Phyra87647;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2318 . CDS 19 1180 . - 0 ID=Phyra87647;Parent=Phyra87647;rank=2 scaffold_2318 . exon 19 1180 . - . ID=Phyra87647.2;Parent=Phyra87647;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2318 . CDS 2345 3290 . - 0 ID=Phyra87647;Parent=Phyra87647;rank=1 scaffold_2318 . exon 2345 3290 . - . ID=Phyra87647.1;Parent=Phyra87647;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2316 1 3372 scaffold_2316 . repeat_region 1276 2406 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2446 1 3372 scaffold_2446 . repeat_region 281 323 . ? . description=trf scaffold_2446 . repeat_region 1203 1225 . ? . description=trf scaffold_2446 . repeat_region 1230 2312 . ? . description=dust scaffold_2446 . biological_region 2908 2912 0.999 - . logic_name=eponine scaffold_2446 ensembl protein_coding_gene 566 3260 . - . ID=Phyra87708;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2446000001;logic_name=jgi_phyra1 scaffold_2446 ensembl transcript 566 3260 . - . ID=Phyra87708;Parent=Phyra87708;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2446 . CDS 566 1224 . - 0 ID=Phyra87708;Parent=Phyra87708;rank=2 scaffold_2446 . exon 566 1224 . - . ID=Phyra87708.2;Parent=Phyra87708;constitutive=1;ensembl_phase=1;rank=2 scaffold_2446 . CDS 2366 3260 . - 0 ID=Phyra87708;Parent=Phyra87708;rank=1 scaffold_2446 . exon 2366 3260 . - . ID=Phyra87708.1;Parent=Phyra87708;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2311 1 3373 scaffold_2311 . biological_region 1 2 0.999 + . logic_name=eponine scaffold_2311 . repeat_region 213 491 . + . description=GypsyPi-1c_I-int scaffold_2311 . repeat_region 740 759 . ? . description=dust scaffold_2311 . repeat_region 1468 2552 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2307 1 3374 scaffold_2307 . biological_region 757 758 0.999 - . logic_name=eponine scaffold_2307 . biological_region 793 798 0.999 + . logic_name=eponine scaffold_2307 . repeat_region 977 2023 . ? . description=dust scaffold_2307 . repeat_region 2181 3374 . + . description=GypsyPi-1c_I-int scaffold_2307 ensembl protein_coding_gene 2214 2582 . + . ID=Phyra45203;biotype=protein_coding;external_name=gwEuk.2307.1.1;logic_name=jgi_phyra1 scaffold_2307 ensembl transcript 2214 2582 . + . ID=Phyra45203;Parent=Phyra45203;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2307 . CDS 2214 2582 . + 0 ID=Phyra45203;Parent=Phyra45203;rank=1 scaffold_2307 . exon 2214 2582 . + . ID=Phyra45203.1;Parent=Phyra45203;constitutive=1;rank=1 scaffold_2307 ensembl protein_coding_gene 3064 3372 . + . ID=Phyra45206;biotype=protein_coding;external_name=gwEuk.2307.4.1;logic_name=jgi_phyra1 scaffold_2307 ensembl transcript 3064 3372 . + . ID=Phyra45206;Parent=Phyra45206;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2307 . CDS 3064 3372 . + 0 ID=Phyra45206;Parent=Phyra45206;rank=1 scaffold_2307 . exon 3064 3372 . + . ID=Phyra45206.1;Parent=Phyra45206;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2308 1 3377 scaffold_2308 . repeat_region 1583 1993 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2310 1 3377 scaffold_2310 . repeat_region 954 2252 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2305 1 3378 scaffold_2305 . repeat_region 1153 2312 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2300 1 3379 scaffold_2300 . biological_region 325 326 0.999 - . logic_name=eponine scaffold_2300 . biological_region 377 382 0.999 - . logic_name=eponine scaffold_2300 . biological_region 417 418 0.999 + . logic_name=eponine scaffold_2300 . biological_region 454 455 0.999 + . logic_name=eponine scaffold_2300 . biological_region 479 484 0.999 - . logic_name=eponine scaffold_2300 . biological_region 530 535 0.999 - . logic_name=eponine scaffold_2300 . repeat_region 1153 2239 . ? . description=dust scaffold_2300 . repeat_region 2683 3370 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_2302 1 3379 scaffold_2302 . repeat_region 1029 1970 . ? . description=dust scaffold_2302 . repeat_region 2201 2242 . ? . description=trf scaffold_2302 . repeat_region 3202 3223 . ? . description=trf scaffold_2302 ensembl protein_coding_gene 2513 3007 . - . ID=Phyra72543;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2302000001;logic_name=jgi_phyra1 scaffold_2302 ensembl transcript 2513 3007 . - . ID=Phyra72543;Parent=Phyra72543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2302 . CDS 2513 3007 . - 0 ID=Phyra72543;Parent=Phyra72543;rank=1 scaffold_2302 . exon 2513 3007 . - . ID=Phyra72543.1;Parent=Phyra72543;constitutive=1;rank=1 scaffold_2302 ensembl protein_coding_gene 35 1026 . - . ID=Phyra87642;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2302000001;logic_name=jgi_phyra1 scaffold_2302 ensembl transcript 35 1026 . - . ID=Phyra87642;Parent=Phyra87642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2302 . CDS 35 1026 . - 0 ID=Phyra87642;Parent=Phyra87642;rank=1 scaffold_2302 . exon 35 1026 . - . ID=Phyra87642.1;Parent=Phyra87642;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2440 1 3379 scaffold_2440 . repeat_region 142 225 . ? . description=trf scaffold_2440 . repeat_region 1109 2424 . ? . description=dust scaffold_2440 . biological_region 2552 2556 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2297 1 3382 scaffold_2297 . repeat_region 1202 2505 . ? . description=dust scaffold_2297 . biological_region 3025 3032 0.999 - . logic_name=eponine scaffold_2297 ensembl protein_coding_gene 88 1185 . - . ID=Phyra87639;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2297000001;logic_name=jgi_phyra1 scaffold_2297 ensembl transcript 88 1185 . - . ID=Phyra87639;Parent=Phyra87639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2297 . CDS 88 1185 . - 0 ID=Phyra87639;Parent=Phyra87639;rank=1 scaffold_2297 . exon 88 1185 . - . ID=Phyra87639.1;Parent=Phyra87639;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2299 1 3382 scaffold_2299 . repeat_region 235 250 . ? . description=dust scaffold_2299 . biological_region 609 611 0.999 + . logic_name=eponine scaffold_2299 . repeat_region 745 2037 . ? . description=dust scaffold_2299 . repeat_region 3156 3164 . ? . description=dust scaffold_2299 ensembl protein_coding_gene 2226 2864 . - . ID=Phyra87640;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2299000001;logic_name=jgi_phyra1 scaffold_2299 ensembl transcript 2226 2864 . - . ID=Phyra87640;Parent=Phyra87640;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2299 . CDS 2226 2571 . - 0 ID=Phyra87640;Parent=Phyra87640;rank=2 scaffold_2299 . exon 2226 2571 . - . ID=Phyra87640.2;Parent=Phyra87640;constitutive=1;ensembl_phase=2;rank=2 scaffold_2299 . CDS 2635 2864 . - 0 ID=Phyra87640;Parent=Phyra87640;rank=1 scaffold_2299 . exon 2635 2864 . - . ID=Phyra87640.1;Parent=Phyra87640;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2294 1 3383 scaffold_2294 . repeat_region 256 311 . ? . description=trf scaffold_2294 . repeat_region 309 338 . ? . description=trf scaffold_2294 . repeat_region 1472 2171 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2298 1 3383 scaffold_2298 . repeat_region 889 2230 . ? . description=dust scaffold_2298 . repeat_region 2961 3043 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_2292 1 3384 scaffold_2292 . repeat_region 1454 2699 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2295 1 3384 scaffold_2295 . repeat_region 1119 2150 . ? . description=dust scaffold_2295 . biological_region 3058 3060 0.999 + . logic_name=eponine scaffold_2295 ensembl protein_coding_gene 2163 2726 . + . ID=Phyra87636;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2295000001;logic_name=jgi_phyra1 scaffold_2295 ensembl transcript 2163 2726 . + . ID=Phyra87636;Parent=Phyra87636;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2295 . CDS 2163 2319 . + 0 ID=Phyra87636;Parent=Phyra87636;rank=1 scaffold_2295 . exon 2163 2319 . + . ID=Phyra87636.1;Parent=Phyra87636;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2295 . CDS 2386 2726 . + 0 ID=Phyra87636;Parent=Phyra87636;rank=2 scaffold_2295 . exon 2386 2726 . + . ID=Phyra87636.2;Parent=Phyra87636;constitutive=1;ensembl_phase=1;rank=2 scaffold_2295 ensembl protein_coding_gene 2885 3259 . - . ID=Phyra87637;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2295000002;logic_name=jgi_phyra1 scaffold_2295 ensembl transcript 2885 3259 . - . ID=Phyra87637;Parent=Phyra87637;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2295 . CDS 2885 3259 . - 0 ID=Phyra87637;Parent=Phyra87637;rank=1 scaffold_2295 . exon 2885 3259 . - . ID=Phyra87637.1;Parent=Phyra87637;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2288 1 3386 scaffold_2288 . repeat_region 32 189 . ? . description=trf scaffold_2288 . repeat_region 32 212 . ? . description=trf scaffold_2288 . biological_region 259 261 0.999 + . logic_name=eponine scaffold_2288 . biological_region 404 409 0.999 - . logic_name=eponine scaffold_2288 . repeat_region 842 2125 . ? . description=dust scaffold_2288 . biological_region 2715 2718 0.999 + . logic_name=eponine scaffold_2288 . repeat_region 2741 2767 . ? . description=trf scaffold_2288 ensembl protein_coding_gene 3170 3385 . - . ID=Phyra44960;biotype=protein_coding;external_name=gwEuk.2288.2.1;logic_name=jgi_phyra1 scaffold_2288 ensembl transcript 3170 3385 . - . ID=Phyra44960;Parent=Phyra44960;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2288 . CDS 3170 3385 . - 0 ID=Phyra44960;Parent=Phyra44960;rank=1 scaffold_2288 . exon 3170 3385 . - . ID=Phyra44960.1;Parent=Phyra44960;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2289 1 3386 scaffold_2289 . repeat_region 71 78 . ? . description=dust scaffold_2289 . repeat_region 1000 2097 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2290 1 3386 scaffold_2290 . repeat_region 837 857 . ? . description=trf scaffold_2290 . repeat_region 1293 1810 . ? . description=dust scaffold_2290 . repeat_region 1851 1881 . ? . description=trf scaffold_2290 . biological_region 1970 1970 0.999 - . logic_name=eponine scaffold_2290 . biological_region 3061 3064 0.999 - . logic_name=eponine scaffold_2290 ensembl protein_coding_gene 95 3358 . + . ID=Phyra87634;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2290000001;logic_name=jgi_phyra1 scaffold_2290 ensembl transcript 95 3358 . + . ID=Phyra87634;Parent=Phyra87634;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2290 . CDS 95 750 . + 0 ID=Phyra87634;Parent=Phyra87634;rank=1 scaffold_2290 . exon 95 750 . + . ID=Phyra87634.1;Parent=Phyra87634;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2290 . CDS 800 1242 . + 0 ID=Phyra87634;Parent=Phyra87634;rank=2 scaffold_2290 . exon 800 1242 . + . ID=Phyra87634.2;Parent=Phyra87634;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2290 . CDS 1837 3358 . + 0 ID=Phyra87634;Parent=Phyra87634;rank=3 scaffold_2290 . exon 1837 3358 . + . ID=Phyra87634.3;Parent=Phyra87634;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_2286 1 3388 scaffold_2286 . repeat_region 1112 2088 . ? . description=dust scaffold_2286 . repeat_region 2541 2585 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2284 1 3389 scaffold_2284 . repeat_region 395 441 . ? . description=trf scaffold_2284 . biological_region 771 775 0.999 + . logic_name=eponine scaffold_2284 . repeat_region 960 1000 . ? . description=trf scaffold_2284 . repeat_region 1087 2079 . ? . description=dust scaffold_2284 . repeat_region 2955 2996 . ? . description=trf scaffold_2284 ensembl protein_coding_gene 3108 3332 . - . ID=Phyra44958;biotype=protein_coding;external_name=gwEuk.2284.3.1;logic_name=jgi_phyra1 scaffold_2284 ensembl transcript 3108 3332 . - . ID=Phyra44958;Parent=Phyra44958;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2284 . CDS 3108 3332 . - 0 ID=Phyra44958;Parent=Phyra44958;rank=1 scaffold_2284 . exon 3108 3332 . - . ID=Phyra44958.1;Parent=Phyra44958;constitutive=1;rank=1 scaffold_2284 ensembl protein_coding_gene 350 2703 . + . ID=Phyra87633;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2284000001;logic_name=jgi_phyra1 scaffold_2284 ensembl transcript 350 2703 . + . ID=Phyra87633;Parent=Phyra87633;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2284 . CDS 350 399 . + 0 ID=Phyra87633;Parent=Phyra87633;rank=1 scaffold_2284 . exon 350 399 . + . ID=Phyra87633.1;Parent=Phyra87633;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2284 . CDS 544 1048 . + 0 ID=Phyra87633;Parent=Phyra87633;rank=2 scaffold_2284 . exon 544 1048 . + . ID=Phyra87633.2;Parent=Phyra87633;constitutive=1;ensembl_phase=2;rank=2 scaffold_2284 . CDS 2083 2703 . + 0 ID=Phyra87633;Parent=Phyra87633;rank=3 scaffold_2284 . exon 2083 2703 . + . ID=Phyra87633.3;Parent=Phyra87633;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_2281 1 3393 scaffold_2281 . repeat_region 227 268 . ? . description=trf scaffold_2281 . repeat_region 377 875 . + . description=GypsyPi-1c_I-int scaffold_2281 . repeat_region 1135 2103 . ? . description=dust scaffold_2281 ensembl protein_coding_gene 2873 3385 . + . ID=Phyra87631;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2281000001;logic_name=jgi_phyra1 scaffold_2281 ensembl transcript 2873 3385 . + . ID=Phyra87631;Parent=Phyra87631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2281 . CDS 2873 3385 . + 0 ID=Phyra87631;Parent=Phyra87631;rank=1 scaffold_2281 . exon 2873 3385 . + . ID=Phyra87631.1;Parent=Phyra87631;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2278 1 3394 scaffold_2278 . repeat_region 1791 2189 . ? . description=dust scaffold_2278 . repeat_region 2200 2232 . ? . description=trf scaffold_2278 ensembl protein_coding_gene 552 1540 . - . ID=Phyra87628;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2278000001;logic_name=jgi_phyra1 scaffold_2278 ensembl transcript 552 1540 . - . ID=Phyra87628;Parent=Phyra87628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2278 . CDS 552 1300 . - 0 ID=Phyra87628;Parent=Phyra87628;rank=2 scaffold_2278 . exon 552 1300 . - . ID=Phyra87628.2;Parent=Phyra87628;constitutive=1;ensembl_phase=1;rank=2 scaffold_2278 . CDS 1387 1540 . - 0 ID=Phyra87628;Parent=Phyra87628;rank=1 scaffold_2278 . exon 1387 1540 . - . ID=Phyra87628.1;Parent=Phyra87628;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2409 1 3394 scaffold_2409 . repeat_region 819 2135 . ? . description=dust scaffold_2409 . biological_region 3153 3155 0.999 - . logic_name=eponine scaffold_2409 . biological_region 3208 3211 0.999 + . logic_name=eponine scaffold_2409 ensembl protein_coding_gene 752 3361 . - . ID=Phyra87695;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2409000001;logic_name=jgi_phyra1 scaffold_2409 ensembl transcript 752 3361 . - . ID=Phyra87695;Parent=Phyra87695;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2409 . CDS 752 774 . - 0 ID=Phyra87695;Parent=Phyra87695;rank=3 scaffold_2409 . exon 752 774 . - . ID=Phyra87695.3;Parent=Phyra87695;constitutive=1;ensembl_phase=1;rank=3 scaffold_2409 . CDS 2145 2906 . - 0 ID=Phyra87695;Parent=Phyra87695;rank=2 scaffold_2409 . exon 2145 2906 . - . ID=Phyra87695.2;Parent=Phyra87695;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2409 . CDS 2974 3361 . - 0 ID=Phyra87695;Parent=Phyra87695;rank=1 scaffold_2409 . exon 2974 3361 . - . ID=Phyra87695.1;Parent=Phyra87695;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2279 1 3395 scaffold_2279 . repeat_region 16 37 . ? . description=trf scaffold_2279 . repeat_region 761 803 . ? . description=trf scaffold_2279 . repeat_region 878 2236 . ? . description=dust scaffold_2279 . repeat_region 3352 3393 . ? . description=trf scaffold_2279 ensembl protein_coding_gene 2357 3082 . + . ID=Phyra72542;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2279000001;logic_name=jgi_phyra1 scaffold_2279 ensembl transcript 2357 3082 . + . ID=Phyra72542;Parent=Phyra72542;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2279 . CDS 2357 3082 . + 0 ID=Phyra72542;Parent=Phyra72542;rank=1 scaffold_2279 . exon 2357 3082 . + . ID=Phyra72542.1;Parent=Phyra72542;constitutive=1;rank=1 scaffold_2279 ensembl protein_coding_gene 98 589 . - . ID=Phyra87629;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2279000001;logic_name=jgi_phyra1 scaffold_2279 ensembl transcript 98 589 . - . ID=Phyra87629;Parent=Phyra87629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2279 . CDS 98 589 . - 0 ID=Phyra87629;Parent=Phyra87629;rank=1 scaffold_2279 . exon 98 589 . - . ID=Phyra87629.1;Parent=Phyra87629;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2283 1 3395 scaffold_2283 . repeat_region 182 885 . - . description=GypsyPi-1c_I-int scaffold_2283 . repeat_region 970 1643 . ? . description=dust scaffold_2283 . repeat_region 2020 2750 . - . description=GypsyPi-1c_I-int scaffold_2283 . biological_region 3230 3232 0.999 - . logic_name=eponine scaffold_2283 . biological_region 3281 3287 0.999 - . logic_name=eponine scaffold_2283 ensembl protein_coding_gene 1977 3395 . - . ID=Phyra87632;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2283000001;logic_name=jgi_phyra1 scaffold_2283 ensembl transcript 1977 3395 . - . ID=Phyra87632;Parent=Phyra87632;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2283 . CDS 1977 3395 . - 0 ID=Phyra87632;Parent=Phyra87632;rank=1 scaffold_2283 . exon 1977 3395 . - . ID=Phyra87632.1;Parent=Phyra87632;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2276 1 3396 scaffold_2276 . biological_region 409 410 0.999 - . logic_name=eponine scaffold_2276 . biological_region 461 466 0.999 - . logic_name=eponine scaffold_2276 . biological_region 501 502 0.999 + . logic_name=eponine scaffold_2276 . biological_region 538 539 0.999 + . logic_name=eponine scaffold_2276 . biological_region 563 568 0.999 - . logic_name=eponine scaffold_2276 . biological_region 615 619 0.999 - . logic_name=eponine scaffold_2276 . repeat_region 1068 2384 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2272 1 3397 scaffold_2272 . repeat_region 1481 1493 . ? . description=dust scaffold_2272 . repeat_region 1746 1753 . ? . description=dust scaffold_2272 . repeat_region 1900 2092 . + . description=Polinton-1_PI scaffold_2272 . repeat_region 2086 2293 . + . description=Polinton-1_PI scaffold_2272 . repeat_region 2490 2497 . ? . description=dust scaffold_2272 ensembl protein_coding_gene 45 584 . - . ID=Phyra87624;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2272000001;logic_name=jgi_phyra1 scaffold_2272 ensembl transcript 45 584 . - . ID=Phyra87624;Parent=Phyra87624;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2272 . CDS 45 584 . - 0 ID=Phyra87624;Parent=Phyra87624;rank=1 scaffold_2272 . exon 45 584 . - . ID=Phyra87624.1;Parent=Phyra87624;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2339 1 3397 scaffold_2339 . repeat_region 850 871 . ? . description=trf scaffold_2339 . repeat_region 1210 2182 . ? . description=dust scaffold_2339 . repeat_region 3124 3166 . ? . description=trf scaffold_2339 . repeat_region 3275 3311 . ? . description=trf scaffold_2339 ensembl protein_coding_gene 2669 2998 . + . ID=Phyra45235;biotype=protein_coding;external_name=gwEuk.2339.3.1;logic_name=jgi_phyra1 scaffold_2339 ensembl transcript 2669 2998 . + . ID=Phyra45235;Parent=Phyra45235;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2339 . CDS 2669 2998 . + 0 ID=Phyra45235;Parent=Phyra45235;rank=1 scaffold_2339 . exon 2669 2998 . + . ID=Phyra45235.1;Parent=Phyra45235;constitutive=1;rank=1 scaffold_2339 ensembl protein_coding_gene 28 2537 . + . ID=Phyra87658;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2339000001;logic_name=jgi_phyra1 scaffold_2339 ensembl transcript 28 2537 . + . ID=Phyra87658;Parent=Phyra87658;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2339 . CDS 28 1173 . + 0 ID=Phyra87658;Parent=Phyra87658;rank=1 scaffold_2339 . exon 28 1173 . + . ID=Phyra87658.1;Parent=Phyra87658;constitutive=1;rank=1 scaffold_2339 . CDS 2201 2537 . + 0 ID=Phyra87658;Parent=Phyra87658;rank=2 scaffold_2339 . exon 2201 2537 . + . ID=Phyra87658.2;Parent=Phyra87658;constitutive=1;ensembl_end_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2273 1 3398 scaffold_2273 . biological_region 763 765 0.999 - . logic_name=eponine scaffold_2273 . biological_region 856 857 0.999 + . logic_name=eponine scaffold_2273 . biological_region 947 950 0.999 - . logic_name=eponine scaffold_2273 . repeat_region 1033 2134 . ? . description=dust scaffold_2273 . repeat_region 2216 2564 . - . description=GypsyPi-1c_I-int scaffold_2273 . repeat_region 2900 3386 . - . description=GypsyPi-1c_I-int scaffold_2273 ensembl protein_coding_gene 2296 2562 . - . ID=Phyra44944;biotype=protein_coding;external_name=gwEuk.2273.4.1;logic_name=jgi_phyra1 scaffold_2273 ensembl transcript 2296 2562 . - . ID=Phyra44944;Parent=Phyra44944;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2273 . CDS 2296 2562 . - 0 ID=Phyra44944;Parent=Phyra44944;rank=1 scaffold_2273 . exon 2296 2562 . - . ID=Phyra44944.1;Parent=Phyra44944;constitutive=1;rank=1 scaffold_2273 ensembl protein_coding_gene 287 956 . + . ID=Phyra87625;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2273000001;logic_name=jgi_phyra1 scaffold_2273 ensembl transcript 287 956 . + . ID=Phyra87625;Parent=Phyra87625;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2273 . CDS 287 885 . + 0 ID=Phyra87625;Parent=Phyra87625;rank=1 scaffold_2273 . exon 287 885 . + . ID=Phyra87625.1;Parent=Phyra87625;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2273 . CDS 935 956 . + 0 ID=Phyra87625;Parent=Phyra87625;rank=2 scaffold_2273 . exon 935 956 . + . ID=Phyra87625.2;Parent=Phyra87625;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_2275 1 3398 scaffold_2275 . biological_region 270 271 0.999 - . logic_name=eponine scaffold_2275 . repeat_region 1340 1867 . ? . description=dust scaffold_2275 . repeat_region 2075 2090 . ? . description=dust scaffold_2275 . biological_region 2395 2395 0.999 - . logic_name=eponine scaffold_2275 ensembl protein_coding_gene 1049 1198 . - . ID=Phyra44948;biotype=protein_coding;external_name=gwEuk.2275.1.1;logic_name=jgi_phyra1 scaffold_2275 ensembl transcript 1049 1198 . - . ID=Phyra44948;Parent=Phyra44948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2275 . CDS 1049 1198 . - 0 ID=Phyra44948;Parent=Phyra44948;rank=1 scaffold_2275 . exon 1049 1198 . - . ID=Phyra44948.1;Parent=Phyra44948;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2274 1 3399 scaffold_2274 . biological_region 106 110 0.999 + . logic_name=eponine scaffold_2274 . biological_region 157 162 0.999 + . logic_name=eponine scaffold_2274 . biological_region 259 264 0.999 + . logic_name=eponine scaffold_2274 . biological_region 316 317 0.999 + . logic_name=eponine scaffold_2274 . repeat_region 790 1238 . + . description=GypsyPi-1c_I-int scaffold_2274 . repeat_region 1240 2099 . ? . description=dust scaffold_2274 . repeat_region 2165 2793 . + . description=GypsyPi-1c_I-int scaffold_2274 . repeat_region 3098 3376 . + . description=GypsyPi-1c_I-int scaffold_2274 ensembl protein_coding_gene 2468 2722 . + . ID=Phyra44947;biotype=protein_coding;external_name=gwEuk.2274.2.1;logic_name=jgi_phyra1 scaffold_2274 ensembl transcript 2468 2722 . + . ID=Phyra44947;Parent=Phyra44947;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2274 . CDS 2468 2722 . + 0 ID=Phyra44947;Parent=Phyra44947;rank=1 scaffold_2274 . exon 2468 2722 . + . ID=Phyra44947.1;Parent=Phyra44947;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2271 1 3400 scaffold_2271 . biological_region 26 26 0.999 + . logic_name=eponine scaffold_2271 . repeat_region 1325 1666 . ? . description=dust scaffold_2271 . repeat_region 1683 1846 . ? . description=trf scaffold_2271 . repeat_region 1928 2043 . ? . description=trf scaffold_2271 . repeat_region 2336 2409 . ? . description=trf scaffold_2271 . repeat_region 2420 2463 . ? . description=trf scaffold_2271 . biological_region 2577 2579 0.999 - . logic_name=eponine scaffold_2271 ensembl protein_coding_gene 83 457 . + . ID=Phyra87622;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2271000001;logic_name=jgi_phyra1 scaffold_2271 ensembl transcript 83 457 . + . ID=Phyra87622;Parent=Phyra87622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2271 . CDS 83 457 . + 0 ID=Phyra87622;Parent=Phyra87622;rank=1 scaffold_2271 . exon 83 457 . + . ID=Phyra87622.1;Parent=Phyra87622;constitutive=1;rank=1 scaffold_2271 ensembl protein_coding_gene 1133 3322 . + . ID=Phyra87623;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2271000002;logic_name=jgi_phyra1 scaffold_2271 ensembl transcript 1133 3322 . + . ID=Phyra87623;Parent=Phyra87623;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2271 . CDS 1133 1289 . + 0 ID=Phyra87623;Parent=Phyra87623;rank=1 scaffold_2271 . exon 1133 1289 . + . ID=Phyra87623.1;Parent=Phyra87623;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2271 . CDS 1752 3322 . + 0 ID=Phyra87623;Parent=Phyra87623;rank=2 scaffold_2271 . exon 1752 3322 . + . ID=Phyra87623.2;Parent=Phyra87623;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2269 1 3401 scaffold_2269 . biological_region 1197 1199 0.999 + . logic_name=eponine scaffold_2269 . repeat_region 1563 2520 . ? . description=dust scaffold_2269 ensembl protein_coding_gene 61 3298 . + . ID=Phyra87620;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2269000001;logic_name=jgi_phyra1 scaffold_2269 ensembl transcript 61 3298 . + . ID=Phyra87620;Parent=Phyra87620;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2269 . CDS 61 88 . + 0 ID=Phyra87620;Parent=Phyra87620;rank=1 scaffold_2269 . exon 61 88 . + . ID=Phyra87620.1;Parent=Phyra87620;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2269 . CDS 300 362 . + 0 ID=Phyra87620;Parent=Phyra87620;rank=2 scaffold_2269 . exon 300 362 . + . ID=Phyra87620.2;Parent=Phyra87620;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2269 . CDS 662 778 . + 0 ID=Phyra87620;Parent=Phyra87620;rank=3 scaffold_2269 . exon 662 778 . + . ID=Phyra87620.3;Parent=Phyra87620;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2269 . CDS 854 1498 . + 0 ID=Phyra87620;Parent=Phyra87620;rank=4 scaffold_2269 . exon 854 1498 . + . ID=Phyra87620.4;Parent=Phyra87620;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_2269 . CDS 2643 3298 . + 0 ID=Phyra87620;Parent=Phyra87620;rank=5 scaffold_2269 . exon 2643 3298 . + . ID=Phyra87620.5;Parent=Phyra87620;constitutive=1;ensembl_phase=1;rank=5 ##gff-version 3 ##sequence-region scaffold_2270 1 3401 scaffold_2270 . repeat_region 939 995 . ? . description=trf scaffold_2270 . repeat_region 939 995 . ? . description=trf scaffold_2270 . repeat_region 1067 1151 . ? . description=trf scaffold_2270 . repeat_region 1259 1291 . ? . description=trf scaffold_2270 . repeat_region 1382 2210 . ? . description=dust scaffold_2270 . repeat_region 2266 2502 . + . description=GypsyPi-1c_LTR scaffold_2270 . repeat_region 2503 3331 . + . description=GypsyPi-1c_I-int scaffold_2270 ensembl protein_coding_gene 2738 3322 . + . ID=Phyra87621;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2270000001;logic_name=jgi_phyra1 scaffold_2270 ensembl transcript 2738 3322 . + . ID=Phyra87621;Parent=Phyra87621;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2270 . CDS 2738 2743 . + 0 ID=Phyra87621;Parent=Phyra87621;rank=1 scaffold_2270 . exon 2738 2743 . + . ID=Phyra87621.1;Parent=Phyra87621;constitutive=1;rank=1 scaffold_2270 . CDS 2779 3322 . + 0 ID=Phyra87621;Parent=Phyra87621;rank=2 scaffold_2270 . exon 2779 3322 . + . ID=Phyra87621.2;Parent=Phyra87621;constitutive=1;ensembl_end_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2410 1 3402 scaffold_2410 . repeat_region 842 2124 . ? . description=dust scaffold_2410 ensembl protein_coding_gene 8 666 . - . ID=Phyra87696;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2410000001;logic_name=jgi_phyra1 scaffold_2410 ensembl transcript 8 666 . - . ID=Phyra87696;Parent=Phyra87696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2410 . CDS 8 666 . - 0 ID=Phyra87696;Parent=Phyra87696;rank=1 scaffold_2410 . exon 8 666 . - . ID=Phyra87696.1;Parent=Phyra87696;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2410 ensembl protein_coding_gene 2523 3338 . - . ID=Phyra87697;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2410000002;logic_name=jgi_phyra1 scaffold_2410 ensembl transcript 2523 3338 . - . ID=Phyra87697;Parent=Phyra87697;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2410 . CDS 2523 3338 . - 0 ID=Phyra87697;Parent=Phyra87697;rank=1 scaffold_2410 . exon 2523 3338 . - . ID=Phyra87697.1;Parent=Phyra87697;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2263 1 3404 scaffold_2263 . biological_region 545 547 0.999 - . logic_name=eponine scaffold_2263 . repeat_region 1469 2622 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2266 1 3404 scaffold_2266 . repeat_region 239 272 . ? . description=trf scaffold_2266 . repeat_region 1328 2481 . ? . description=dust scaffold_2266 . repeat_region 3117 3130 . ? . description=dust scaffold_2266 ensembl protein_coding_gene 628 3267 . - . ID=Phyra87618;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2266000001;logic_name=jgi_phyra1 scaffold_2266 ensembl transcript 628 3267 . - . ID=Phyra87618;Parent=Phyra87618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2266 . CDS 628 1290 . - 0 ID=Phyra87618;Parent=Phyra87618;rank=4 scaffold_2266 . exon 628 1290 . - . ID=Phyra87618.4;Parent=Phyra87618;constitutive=1;rank=4 scaffold_2266 . CDS 2539 2869 . - 0 ID=Phyra87618;Parent=Phyra87618;rank=3 scaffold_2266 . exon 2539 2869 . - . ID=Phyra87618.3;Parent=Phyra87618;constitutive=1;ensembl_phase=2;rank=3 scaffold_2266 . CDS 2985 3017 . - 0 ID=Phyra87618;Parent=Phyra87618;rank=2 scaffold_2266 . exon 2985 3017 . - . ID=Phyra87618.2;Parent=Phyra87618;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2266 . CDS 3167 3267 . - 0 ID=Phyra87618;Parent=Phyra87618;rank=1 scaffold_2266 . exon 3167 3267 . - . ID=Phyra87618.1;Parent=Phyra87618;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2268 1 3404 scaffold_2268 . repeat_region 82 124 . ? . description=trf scaffold_2268 . repeat_region 1132 2309 . ? . description=dust scaffold_2268 . repeat_region 2483 2525 . ? . description=trf scaffold_2268 . repeat_region 3147 3210 . ? . description=trf scaffold_2268 ensembl protein_coding_gene 151 2590 . + . ID=Phyra87619;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2268000001;logic_name=jgi_phyra1 scaffold_2268 ensembl transcript 151 2590 . + . ID=Phyra87619;Parent=Phyra87619;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2268 . CDS 151 185 . + 0 ID=Phyra87619;Parent=Phyra87619;rank=1 scaffold_2268 . exon 151 185 . + . ID=Phyra87619.1;Parent=Phyra87619;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2268 . CDS 338 997 . + 0 ID=Phyra87619;Parent=Phyra87619;rank=2 scaffold_2268 . exon 338 997 . + . ID=Phyra87619.2;Parent=Phyra87619;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2268 . CDS 2545 2590 . + 0 ID=Phyra87619;Parent=Phyra87619;rank=3 scaffold_2268 . exon 2545 2590 . + . ID=Phyra87619.3;Parent=Phyra87619;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_2264 1 3405 scaffold_2264 . repeat_region 633 675 . ? . description=trf scaffold_2264 . repeat_region 1337 2664 . ? . description=dust scaffold_2264 . repeat_region 3192 3234 . ? . description=trf scaffold_2264 . repeat_region 3332 3378 . ? . description=trf scaffold_2264 ensembl protein_coding_gene 82 3095 . - . ID=Phyra87617;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2264000001;logic_name=jgi_phyra1 scaffold_2264 ensembl transcript 82 3095 . - . ID=Phyra87617;Parent=Phyra87617;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2264 . CDS 82 411 . - 0 ID=Phyra87617;Parent=Phyra87617;rank=3 scaffold_2264 . exon 82 411 . - . ID=Phyra87617.3;Parent=Phyra87617;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_2264 . CDS 774 1318 . - 0 ID=Phyra87617;Parent=Phyra87617;rank=2 scaffold_2264 . exon 774 1318 . - . ID=Phyra87617.2;Parent=Phyra87617;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2264 . CDS 2673 3095 . - 0 ID=Phyra87617;Parent=Phyra87617;rank=1 scaffold_2264 . exon 2673 3095 . - . ID=Phyra87617.1;Parent=Phyra87617;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2260 1 3406 scaffold_2260 . repeat_region 1059 2181 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2265 1 3406 scaffold_2265 . repeat_region 93 177 . ? . description=trf scaffold_2265 . repeat_region 464 544 . ? . description=dust scaffold_2265 . repeat_region 465 541 . ? . description=trf scaffold_2265 . repeat_region 1248 2438 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2424 1 3406 scaffold_2424 . biological_region 515 518 0.999 + . logic_name=eponine scaffold_2424 . biological_region 840 841 0.999 - . logic_name=eponine scaffold_2424 . biological_region 1281 1286 0.999 + . logic_name=eponine scaffold_2424 . repeat_region 1763 2085 . ? . description=dust scaffold_2424 . repeat_region 2179 2235 . ? . description=trf scaffold_2424 . repeat_region 3234 3274 . ? . description=dust scaffold_2424 ensembl protein_coding_gene 63 829 . - . ID=Phyra45452;biotype=protein_coding;external_name=gwEuk.2424.1.1;logic_name=jgi_phyra1 scaffold_2424 ensembl transcript 63 829 . - . ID=Phyra45452;Parent=Phyra45452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2424 . CDS 63 359 . - 0 ID=Phyra45452;Parent=Phyra45452;rank=3 scaffold_2424 . exon 63 359 . - . ID=Phyra45452.3;Parent=Phyra45452;constitutive=1;rank=3 scaffold_2424 . CDS 427 663 . - 0 ID=Phyra45452;Parent=Phyra45452;rank=2 scaffold_2424 . exon 427 663 . - . ID=Phyra45452.2;Parent=Phyra45452;constitutive=1;rank=2 scaffold_2424 . CDS 698 829 . - 0 ID=Phyra45452;Parent=Phyra45452;rank=1 scaffold_2424 . exon 698 829 . - . ID=Phyra45452.1;Parent=Phyra45452;constitutive=1;rank=1 scaffold_2424 ensembl protein_coding_gene 2469 3227 . - . ID=Phyra87700;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2424000002;logic_name=jgi_phyra1 scaffold_2424 ensembl transcript 2469 3227 . - . ID=Phyra87700;Parent=Phyra87700;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2424 . CDS 2469 3227 . - 0 ID=Phyra87700;Parent=Phyra87700;rank=1 scaffold_2424 . exon 2469 3227 . - . ID=Phyra87700.1;Parent=Phyra87700;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2258 1 3407 scaffold_2258 . repeat_region 115 133 . ? . description=dust scaffold_2258 . repeat_region 1294 1301 . ? . description=dust scaffold_2258 . repeat_region 1692 2260 . ? . description=dust scaffold_2258 ensembl pseudogene 919 1259 . + . ID=Phyra44918;biotype=pseudogene;external_name=gwEuk.2258.6.1;logic_name=jgi_phyra1 scaffold_2258 ensembl pseudogene 919 1259 . + . ID=Phyra44918;Parent=Phyra44918;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_2258 . exon 919 1259 . + . ID=Phyra44918.1;Parent=Phyra44918;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2258 ensembl protein_coding_gene 2296 3015 . + . ID=Phyra72541;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2258000001;logic_name=jgi_phyra1 scaffold_2258 ensembl transcript 2296 3015 . + . ID=Phyra72541;Parent=Phyra72541;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2258 . CDS 2296 3015 . + 0 ID=Phyra72541;Parent=Phyra72541;rank=1 scaffold_2258 . exon 2296 3015 . + . ID=Phyra72541.1;Parent=Phyra72541;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2262 1 3407 scaffold_2262 . biological_region 2916 2920 0.999 + . logic_name=eponine scaffold_2262 ensembl protein_coding_gene 46 843 . + . ID=Phyra87614;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2262000001;logic_name=jgi_phyra1 scaffold_2262 ensembl transcript 46 843 . + . ID=Phyra87614;Parent=Phyra87614;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2262 . CDS 46 843 . + 0 ID=Phyra87614;Parent=Phyra87614;rank=1 scaffold_2262 . exon 46 843 . + . ID=Phyra87614.1;Parent=Phyra87614;constitutive=1;rank=1 scaffold_2262 ensembl protein_coding_gene 1060 1881 . - . ID=Phyra87615;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2262000002;logic_name=jgi_phyra1 scaffold_2262 ensembl transcript 1060 1881 . - . ID=Phyra87615;Parent=Phyra87615;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2262 . CDS 1060 1881 . - 0 ID=Phyra87615;Parent=Phyra87615;rank=1 scaffold_2262 . exon 1060 1881 . - . ID=Phyra87615.1;Parent=Phyra87615;constitutive=1;rank=1 scaffold_2262 ensembl protein_coding_gene 2037 3165 . - . ID=Phyra87616;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2262000003;logic_name=jgi_phyra1 scaffold_2262 ensembl transcript 2037 3165 . - . ID=Phyra87616;Parent=Phyra87616;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2262 . CDS 2037 2870 . - 0 ID=Phyra87616;Parent=Phyra87616;rank=2 scaffold_2262 . exon 2037 2870 . - . ID=Phyra87616.2;Parent=Phyra87616;constitutive=1;rank=2 scaffold_2262 . CDS 2938 3165 . - 0 ID=Phyra87616;Parent=Phyra87616;rank=1 scaffold_2262 . exon 2938 3165 . - . ID=Phyra87616.1;Parent=Phyra87616;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2255 1 3409 scaffold_2255 . repeat_region 1001 2149 . ? . description=dust scaffold_2255 . repeat_region 2507 2531 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2253 1 3410 scaffold_2253 . repeat_region 838 1972 . ? . description=dust scaffold_2253 ensembl protein_coding_gene 2073 3368 . + . ID=Phyra72540;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2253000001;logic_name=jgi_phyra1 scaffold_2253 ensembl transcript 2073 3368 . + . ID=Phyra72540;Parent=Phyra72540;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2253 . CDS 2073 3368 . + 0 ID=Phyra72540;Parent=Phyra72540;rank=1 scaffold_2253 . exon 2073 3368 . + . ID=Phyra72540.1;Parent=Phyra72540;constitutive=1;rank=1 scaffold_2253 ensembl protein_coding_gene 4 824 . + . ID=Phyra87609;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2253000001;logic_name=jgi_phyra1 scaffold_2253 ensembl transcript 4 824 . + . ID=Phyra87609;Parent=Phyra87609;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2253 . CDS 4 824 . + 0 ID=Phyra87609;Parent=Phyra87609;rank=1 scaffold_2253 . exon 4 824 . + . ID=Phyra87609.1;Parent=Phyra87609;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2245 1 3412 scaffold_2245 . repeat_region 2126 2690 . ? . description=dust scaffold_2245 ensembl protein_coding_gene 5 1446 . - . ID=Phyra87602;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2245000001;logic_name=jgi_phyra1 scaffold_2245 ensembl transcript 5 1446 . - . ID=Phyra87602;Parent=Phyra87602;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2245 . CDS 5 397 . - 0 ID=Phyra87602;Parent=Phyra87602;rank=3 scaffold_2245 . exon 5 397 . - . ID=Phyra87602.3;Parent=Phyra87602;constitutive=1;rank=3 scaffold_2245 . CDS 472 641 . - 0 ID=Phyra87602;Parent=Phyra87602;rank=2 scaffold_2245 . exon 472 641 . - . ID=Phyra87602.2;Parent=Phyra87602;constitutive=1;ensembl_phase=1;rank=2 scaffold_2245 . CDS 759 1446 . - 0 ID=Phyra87602;Parent=Phyra87602;rank=1 scaffold_2245 . exon 759 1446 . - . ID=Phyra87602.1;Parent=Phyra87602;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2246 1 3412 scaffold_2246 . repeat_region 935 2307 . ? . description=dust scaffold_2246 . biological_region 2650 2654 0.999 + . logic_name=eponine scaffold_2246 . biological_region 3378 3380 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2251 1 3413 scaffold_2251 . repeat_region 1333 2521 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2252 1 3413 scaffold_2252 . repeat_region 1151 2302 . ? . description=dust scaffold_2252 . repeat_region 3203 3216 . ? . description=dust scaffold_2252 . repeat_region 3203 3326 . ? . description=trf scaffold_2252 . repeat_region 3265 3278 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2250 1 3414 scaffold_2250 . repeat_region 522 539 . ? . description=dust scaffold_2250 . repeat_region 886 912 . ? . description=trf scaffold_2250 . repeat_region 1142 2256 . ? . description=dust scaffold_2250 . biological_region 3381 3381 0.999 + . logic_name=eponine scaffold_2250 ensembl protein_coding_gene 2555 3316 . + . ID=Phyra87608;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2250000001;logic_name=jgi_phyra1 scaffold_2250 ensembl transcript 2555 3316 . + . ID=Phyra87608;Parent=Phyra87608;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2250 . CDS 2555 3316 . + 0 ID=Phyra87608;Parent=Phyra87608;rank=1 scaffold_2250 . exon 2555 3316 . + . ID=Phyra87608.1;Parent=Phyra87608;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2249 1 3415 scaffold_2249 . biological_region 300 304 0.999 - . logic_name=eponine scaffold_2249 . repeat_region 1135 1181 . ? . description=trf scaffold_2249 . repeat_region 1280 1322 . ? . description=trf scaffold_2249 . repeat_region 1325 2087 . ? . description=dust scaffold_2249 ensembl protein_coding_gene 40 997 . - . ID=Phyra87606;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2249000001;logic_name=jgi_phyra1 scaffold_2249 ensembl transcript 40 997 . - . ID=Phyra87606;Parent=Phyra87606;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2249 . CDS 40 997 . - 0 ID=Phyra87606;Parent=Phyra87606;rank=1 scaffold_2249 . exon 40 997 . - . ID=Phyra87606.1;Parent=Phyra87606;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2249 ensembl protein_coding_gene 2410 3385 . + . ID=Phyra87607;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2249000002;logic_name=jgi_phyra1 scaffold_2249 ensembl transcript 2410 3385 . + . ID=Phyra87607;Parent=Phyra87607;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2249 . CDS 2410 3385 . + 0 ID=Phyra87607;Parent=Phyra87607;rank=1 scaffold_2249 . exon 2410 3385 . + . ID=Phyra87607.1;Parent=Phyra87607;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2242 1 3416 scaffold_2242 . repeat_region 1812 2530 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2244 1 3416 scaffold_2244 . repeat_region 1682 2690 . ? . description=dust scaffold_2244 . repeat_region 3000 3009 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2241 1 3420 scaffold_2241 . repeat_region 876 2112 . ? . description=dust scaffold_2241 ensembl protein_coding_gene 63 830 . - . ID=Phyra87601;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2241000001;logic_name=jgi_phyra1 scaffold_2241 ensembl transcript 63 830 . - . ID=Phyra87601;Parent=Phyra87601;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2241 . CDS 63 830 . - 0 ID=Phyra87601;Parent=Phyra87601;rank=1 scaffold_2241 . exon 63 830 . - . ID=Phyra87601.1;Parent=Phyra87601;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2239 1 3421 scaffold_2239 . repeat_region 908 2028 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2232 1 3425 scaffold_2232 . repeat_region 1892 2490 . ? . description=dust scaffold_2232 . repeat_region 2753 2761 . ? . description=dust scaffold_2232 . repeat_region 3332 3417 . ? . description=trf scaffold_2232 ensembl protein_coding_gene 141 896 . - . ID=Phyra87600;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2232000001;logic_name=jgi_phyra1 scaffold_2232 ensembl transcript 141 896 . - . ID=Phyra87600;Parent=Phyra87600;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2232 . CDS 141 255 . - 0 ID=Phyra87600;Parent=Phyra87600;rank=4 scaffold_2232 . exon 141 255 . - . ID=Phyra87600.4;Parent=Phyra87600;constitutive=1;ensembl_phase=2;rank=4 scaffold_2232 . CDS 299 413 . - 0 ID=Phyra87600;Parent=Phyra87600;rank=3 scaffold_2232 . exon 299 413 . - . ID=Phyra87600.3;Parent=Phyra87600;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_2232 . CDS 485 774 . - 0 ID=Phyra87600;Parent=Phyra87600;rank=2 scaffold_2232 . exon 485 774 . - . ID=Phyra87600.2;Parent=Phyra87600;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2232 . CDS 856 896 . - 0 ID=Phyra87600;Parent=Phyra87600;rank=1 scaffold_2232 . exon 856 896 . - . ID=Phyra87600.1;Parent=Phyra87600;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2235 1 3425 scaffold_2235 . repeat_region 1 287 . ? . description=dust scaffold_2235 . repeat_region 1 290 . ? . description=trf scaffold_2235 . repeat_region 940 1678 . ? . description=dust scaffold_2235 . biological_region 1956 1960 0.999 + . logic_name=eponine scaffold_2235 . repeat_region 1980 2013 . ? . description=trf scaffold_2235 . biological_region 1986 1990 0.999 + . logic_name=eponine scaffold_2235 . repeat_region 2510 2671 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2234 1 3426 scaffold_2234 . repeat_region 629 641 . ? . description=dust scaffold_2234 . repeat_region 1175 1317 . - . description=GypsyPi-1c_LTR scaffold_2234 . repeat_region 1367 2465 . ? . description=dust scaffold_2234 . repeat_region 2466 3425 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_2233 1 3427 scaffold_2233 . repeat_region 852 877 . ? . description=trf scaffold_2233 . repeat_region 1042 2370 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2038 1 3428 scaffold_2038 ensembl protein_coding_gene 711 3282 . - . ID=Phyra87476;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2038000001;logic_name=jgi_phyra1 scaffold_2038 ensembl transcript 711 3282 . - . ID=Phyra87476;Parent=Phyra87476;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2038 . CDS 711 727 . - 0 ID=Phyra87476;Parent=Phyra87476;rank=2 scaffold_2038 . exon 711 727 . - . ID=Phyra87476.2;Parent=Phyra87476;constitutive=1;ensembl_phase=1;rank=2 scaffold_2038 . CDS 801 3282 . - 0 ID=Phyra87476;Parent=Phyra87476;rank=1 scaffold_2038 . exon 801 3282 . - . ID=Phyra87476.1;Parent=Phyra87476;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1808 1 3429 scaffold_1808 ensembl protein_coding_gene 387 3221 . - . ID=Phyra87308;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1808000001;logic_name=jgi_phyra1 scaffold_1808 ensembl transcript 387 3221 . - . ID=Phyra87308;Parent=Phyra87308;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1808 . CDS 387 763 . - 0 ID=Phyra87308;Parent=Phyra87308;rank=2 scaffold_1808 . exon 387 763 . - . ID=Phyra87308.2;Parent=Phyra87308;constitutive=1;ensembl_phase=1;rank=2 scaffold_1808 . CDS 953 3221 . - 0 ID=Phyra87308;Parent=Phyra87308;rank=1 scaffold_1808 . exon 953 3221 . - . ID=Phyra87308.1;Parent=Phyra87308;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2287 1 3429 scaffold_2287 . repeat_region 1147 2572 . ? . description=dust scaffold_2287 . repeat_region 2878 2886 . ? . description=dust scaffold_2287 . repeat_region 3234 3242 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2227 1 3431 scaffold_2227 . repeat_region 2477 2508 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2230 1 3431 scaffold_2230 . biological_region 196 200 0.999 + . logic_name=eponine scaffold_2230 . repeat_region 1249 2179 . ? . description=dust scaffold_2230 . repeat_region 3174 3216 . ? . description=trf scaffold_2230 . repeat_region 3314 3360 . ? . description=trf scaffold_2230 ensembl protein_coding_gene 66 3123 . + . ID=Phyra87599;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2230000001;logic_name=jgi_phyra1 scaffold_2230 ensembl transcript 66 3123 . + . ID=Phyra87599;Parent=Phyra87599;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2230 . CDS 66 1232 . + 0 ID=Phyra87599;Parent=Phyra87599;rank=1 scaffold_2230 . exon 66 1232 . + . ID=Phyra87599.1;Parent=Phyra87599;constitutive=1;rank=1 scaffold_2230 . CDS 2209 3123 . + 0 ID=Phyra87599;Parent=Phyra87599;rank=2 scaffold_2230 . exon 2209 3123 . + . ID=Phyra87599.2;Parent=Phyra87599;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2228 1 3432 scaffold_2228 . repeat_region 821 2166 . ? . description=dust scaffold_2228 ensembl protein_coding_gene 6 783 . - . ID=Phyra87598;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2228000001;logic_name=jgi_phyra1 scaffold_2228 ensembl transcript 6 783 . - . ID=Phyra87598;Parent=Phyra87598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2228 . CDS 6 783 . - 0 ID=Phyra87598;Parent=Phyra87598;rank=1 scaffold_2228 . exon 6 783 . - . ID=Phyra87598.1;Parent=Phyra87598;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2229 1 3432 scaffold_2229 . biological_region 1280 1281 0.999 - . logic_name=eponine scaffold_2229 . repeat_region 1471 2678 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2236 1 3433 ##gff-version 3 ##sequence-region scaffold_2256 1 3433 scaffold_2256 . repeat_region 1250 2117 . ? . description=dust scaffold_2256 . repeat_region 2139 2237 . + . description=GypsyPi-1c_I-int scaffold_2256 . repeat_region 2736 2777 . ? . description=trf scaffold_2256 . repeat_region 2811 2844 . ? . description=trf scaffold_2256 . biological_region 2964 2970 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2223 1 3436 scaffold_2223 . repeat_region 21 1217 . + . description=GypsyPi-1c_I-int scaffold_2223 . repeat_region 1218 2298 . ? . description=dust scaffold_2223 ensembl protein_coding_gene 1065 1217 . + . ID=Phyra44888;biotype=protein_coding;external_name=gwEuk.2223.2.1;logic_name=jgi_phyra1 scaffold_2223 ensembl transcript 1065 1217 . + . ID=Phyra44888;Parent=Phyra44888;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2223 . CDS 1065 1217 . + 0 ID=Phyra44888;Parent=Phyra44888;rank=1 scaffold_2223 . exon 1065 1217 . + . ID=Phyra44888.1;Parent=Phyra44888;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2221 1 3438 scaffold_2221 . biological_region 635 637 0.999 + . logic_name=eponine scaffold_2221 . repeat_region 1043 2386 . ? . description=dust scaffold_2221 . biological_region 3354 3356 0.999 - . logic_name=eponine scaffold_2221 . biological_region 3428 3429 0.999 - . logic_name=eponine scaffold_2221 ensembl protein_coding_gene 382 840 . - . ID=Phyra87595;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2221000001;logic_name=jgi_phyra1 scaffold_2221 ensembl transcript 382 840 . - . ID=Phyra87595;Parent=Phyra87595;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2221 . CDS 382 840 . - 0 ID=Phyra87595;Parent=Phyra87595;rank=1 scaffold_2221 . exon 382 840 . - . ID=Phyra87595.1;Parent=Phyra87595;constitutive=1;rank=1 scaffold_2221 ensembl protein_coding_gene 2598 3388 . + . ID=Phyra87596;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2221000002;logic_name=jgi_phyra1 scaffold_2221 ensembl transcript 2598 3388 . + . ID=Phyra87596;Parent=Phyra87596;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2221 . CDS 2598 3388 . + 0 ID=Phyra87596;Parent=Phyra87596;rank=1 scaffold_2221 . exon 2598 3388 . + . ID=Phyra87596.1;Parent=Phyra87596;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2222 1 3438 scaffold_2222 . biological_region 205 208 0.999 - . logic_name=eponine scaffold_2222 . repeat_region 246 746 . - . description=GypsyPi-1c_I-int scaffold_2222 . repeat_region 753 2160 . ? . description=dust scaffold_2222 . biological_region 2515 2516 0.999 - . logic_name=eponine scaffold_2222 . biological_region 2567 2571 0.999 - . logic_name=eponine scaffold_2222 . biological_region 2606 2608 0.999 + . logic_name=eponine scaffold_2222 . biological_region 2645 2645 0.999 + . logic_name=eponine scaffold_2222 . biological_region 2669 2674 0.999 - . logic_name=eponine scaffold_2222 . biological_region 2721 2725 0.999 - . logic_name=eponine scaffold_2222 ensembl protein_coding_gene 369 614 . - . ID=Phyra44886;biotype=protein_coding;external_name=gwEuk.2222.1.1;logic_name=jgi_phyra1 scaffold_2222 ensembl transcript 369 614 . - . ID=Phyra44886;Parent=Phyra44886;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2222 . CDS 369 614 . - 0 ID=Phyra44886;Parent=Phyra44886;rank=1 scaffold_2222 . exon 369 614 . - . ID=Phyra44886.1;Parent=Phyra44886;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2540 1 3441 scaffold_2540 . repeat_region 163 428 . + . description=GypsyPi-1c_LTR scaffold_2540 . repeat_region 810 2139 . ? . description=dust scaffold_2540 . repeat_region 3036 3045 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2216 1 3442 scaffold_2216 . repeat_region 460 502 . ? . description=trf scaffold_2216 . repeat_region 601 647 . ? . description=trf scaffold_2216 . repeat_region 1457 2592 . ? . description=dust scaffold_2216 ensembl protein_coding_gene 26 459 . + . ID=Phyra72538;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2216000001;logic_name=jgi_phyra1 scaffold_2216 ensembl transcript 26 459 . + . ID=Phyra72538;Parent=Phyra72538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2216 . CDS 26 338 . + 0 ID=Phyra72538;Parent=Phyra72538;rank=1 scaffold_2216 . exon 26 338 . + . ID=Phyra72538.1;Parent=Phyra72538;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2216 . CDS 410 459 . + 0 ID=Phyra72538;Parent=Phyra72538;rank=2 scaffold_2216 . exon 410 459 . + . ID=Phyra72538.2;Parent=Phyra72538;constitutive=1;ensembl_phase=1;rank=2 scaffold_2216 ensembl protein_coding_gene 725 2682 . + . ID=Phyra87591;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2216000002;logic_name=jgi_phyra1 scaffold_2216 ensembl transcript 725 2682 . + . ID=Phyra87591;Parent=Phyra87591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2216 . exon 725 1451 . + . ID=Phyra87591.1;Parent=Phyra87591;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2216 . CDS 726 1451 . + 0 ID=Phyra87591;Parent=Phyra87591;rank=1 scaffold_2216 . CDS 2650 2682 . + 0 ID=Phyra87591;Parent=Phyra87591;rank=2 scaffold_2216 . exon 2650 2682 . + . ID=Phyra87591.2;Parent=Phyra87591;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2219 1 3442 scaffold_2219 . repeat_region 430 468 . ? . description=trf scaffold_2219 . repeat_region 430 482 . ? . description=trf scaffold_2219 . repeat_region 579 621 . ? . description=trf scaffold_2219 . repeat_region 1131 1808 . ? . description=dust scaffold_2219 . repeat_region 2403 2445 . ? . description=trf scaffold_2219 ensembl protein_coding_gene 2058 2282 . - . ID=Phyra44879;biotype=protein_coding;external_name=gwEuk.2219.3.1;logic_name=jgi_phyra1 scaffold_2219 ensembl transcript 2058 2282 . - . ID=Phyra44879;Parent=Phyra44879;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2219 . CDS 2058 2282 . - 0 ID=Phyra44879;Parent=Phyra44879;rank=1 scaffold_2219 . exon 2058 2282 . - . ID=Phyra44879.1;Parent=Phyra44879;constitutive=1;rank=1 scaffold_2219 ensembl protein_coding_gene 747 1124 . - . ID=Phyra44885;biotype=protein_coding;external_name=gwEuk.2219.9.1;logic_name=jgi_phyra1 scaffold_2219 ensembl transcript 747 1124 . - . ID=Phyra44885;Parent=Phyra44885;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2219 . CDS 747 1124 . - 0 ID=Phyra44885;Parent=Phyra44885;rank=1 scaffold_2219 . exon 747 1124 . - . ID=Phyra44885.1;Parent=Phyra44885;constitutive=1;rank=1 scaffold_2219 ensembl protein_coding_gene 2739 3394 . + . ID=Phyra87594;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2219000002;logic_name=jgi_phyra1 scaffold_2219 ensembl transcript 2739 3394 . + . ID=Phyra87594;Parent=Phyra87594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2219 . CDS 2739 3394 . + 0 ID=Phyra87594;Parent=Phyra87594;rank=1 scaffold_2219 . exon 2739 3394 . + . ID=Phyra87594.1;Parent=Phyra87594;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2206 1 3443 scaffold_2206 . biological_region 1213 1217 0.999 - . logic_name=eponine scaffold_2206 . biological_region 1458 1462 0.999 + . logic_name=eponine scaffold_2206 . repeat_region 1825 2505 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2217 1 3443 scaffold_2217 . repeat_region 485 498 . ? . description=dust scaffold_2217 . biological_region 675 678 0.999 + . logic_name=eponine scaffold_2217 . repeat_region 751 887 . - . description=GypsyPi-1c_I-int scaffold_2217 . repeat_region 904 2225 . ? . description=dust scaffold_2217 . repeat_region 2229 3430 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_2210 1 3444 scaffold_2210 . repeat_region 3 2878 . - . description=GypsyPi-1c_I-int scaffold_2210 . biological_region 1153 1155 0.999 - . logic_name=eponine scaffold_2210 . repeat_region 1959 2420 . ? . description=dust scaffold_2210 . repeat_region 3250 3444 . - . description=GypsyPi-1c_I-int scaffold_2210 ensembl protein_coding_gene 138 2934 . - . ID=Phyra87586;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2210000001;logic_name=jgi_phyra1 scaffold_2210 ensembl transcript 138 2934 . - . ID=Phyra87586;Parent=Phyra87586;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2210 . CDS 138 434 . - 0 ID=Phyra87586;Parent=Phyra87586;rank=3 scaffold_2210 . exon 138 434 . - . ID=Phyra87586.3;Parent=Phyra87586;constitutive=1;rank=3 scaffold_2210 . CDS 554 1907 . - 0 ID=Phyra87586;Parent=Phyra87586;rank=2 scaffold_2210 . exon 554 1907 . - . ID=Phyra87586.2;Parent=Phyra87586;constitutive=1;ensembl_phase=2;rank=2 scaffold_2210 . CDS 2453 2934 . - 0 ID=Phyra87586;Parent=Phyra87586;rank=1 scaffold_2210 . exon 2453 2934 . - . ID=Phyra87586.1;Parent=Phyra87586;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2213 1 3444 scaffold_2213 . repeat_region 1299 2456 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2211 1 3445 scaffold_2211 . repeat_region 1 345 . - . description=GypsyPi-1c_I-int scaffold_2211 . repeat_region 836 1733 . ? . description=dust scaffold_2211 . biological_region 2840 2840 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2212 1 3445 scaffold_2212 . repeat_region 754 813 . ? . description=trf scaffold_2212 . biological_region 793 794 0.999 + . logic_name=eponine scaffold_2212 . repeat_region 1584 2479 . ? . description=dust scaffold_2212 . repeat_region 2493 3445 . - . description=GypsyPi-1c_I-int scaffold_2212 ensembl protein_coding_gene 67 1546 . + . ID=Phyra87587;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2212000001;logic_name=jgi_phyra1 scaffold_2212 ensembl transcript 67 1546 . + . ID=Phyra87587;Parent=Phyra87587;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2212 . CDS 67 122 . + 0 ID=Phyra87587;Parent=Phyra87587;rank=1 scaffold_2212 . exon 67 122 . + . ID=Phyra87587.1;Parent=Phyra87587;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2212 . CDS 253 333 . + 0 ID=Phyra87587;Parent=Phyra87587;rank=2 scaffold_2212 . exon 253 333 . + . ID=Phyra87587.2;Parent=Phyra87587;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2212 . CDS 405 1397 . + 0 ID=Phyra87587;Parent=Phyra87587;rank=3 scaffold_2212 . exon 405 1397 . + . ID=Phyra87587.3;Parent=Phyra87587;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_2212 . CDS 1450 1546 . + 0 ID=Phyra87587;Parent=Phyra87587;rank=4 scaffold_2212 . exon 1450 1546 . + . ID=Phyra87587.4;Parent=Phyra87587;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_1822 1 3447 ##gff-version 3 ##sequence-region scaffold_2282 1 3447 scaffold_2282 . repeat_region 1125 1744 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2207 1 3448 scaffold_2207 . repeat_region 1259 2442 . ? . description=dust scaffold_2207 ensembl protein_coding_gene 35 971 . + . ID=Phyra44864;biotype=protein_coding;external_name=gwEuk.2207.1.1;logic_name=jgi_phyra1 scaffold_2207 ensembl transcript 35 971 . + . ID=Phyra44864;Parent=Phyra44864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2207 . CDS 35 129 . + 0 ID=Phyra44864;Parent=Phyra44864;rank=1 scaffold_2207 . exon 35 129 . + . ID=Phyra44864.1;Parent=Phyra44864;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2207 . CDS 188 971 . + 0 ID=Phyra44864;Parent=Phyra44864;rank=2 scaffold_2207 . exon 188 971 . + . ID=Phyra44864.2;Parent=Phyra44864;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_2204 1 3449 scaffold_2204 . repeat_region 1120 2398 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2208 1 3449 scaffold_2208 . repeat_region 1200 2205 . ? . description=dust scaffold_2208 ensembl protein_coding_gene 199 1071 . + . ID=Phyra87584;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2208000001;logic_name=jgi_phyra1 scaffold_2208 ensembl transcript 199 1071 . + . ID=Phyra87584;Parent=Phyra87584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2208 . CDS 199 228 . + 0 ID=Phyra87584;Parent=Phyra87584;rank=1 scaffold_2208 . exon 199 228 . + . ID=Phyra87584.1;Parent=Phyra87584;constitutive=1;rank=1 scaffold_2208 . CDS 478 1071 . + 0 ID=Phyra87584;Parent=Phyra87584;rank=2 scaffold_2208 . exon 478 1071 . + . ID=Phyra87584.2;Parent=Phyra87584;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2205 1 3450 scaffold_2205 . repeat_region 380 397 . ? . description=dust scaffold_2205 . repeat_region 1185 2319 . ? . description=dust scaffold_2205 ensembl protein_coding_gene 2706 3377 . - . ID=Phyra87582;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2205000001;logic_name=jgi_phyra1 scaffold_2205 ensembl transcript 2706 3377 . - . ID=Phyra87582;Parent=Phyra87582;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2205 . CDS 2706 2958 . - 0 ID=Phyra87582;Parent=Phyra87582;rank=3 scaffold_2205 . exon 2706 2958 . - . ID=Phyra87582.3;Parent=Phyra87582;constitutive=1;ensembl_phase=2;rank=3 scaffold_2205 . CDS 3006 3220 . - 0 ID=Phyra87582;Parent=Phyra87582;rank=2 scaffold_2205 . exon 3006 3220 . - . ID=Phyra87582.2;Parent=Phyra87582;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2205 . CDS 3303 3377 . - 0 ID=Phyra87582;Parent=Phyra87582;rank=1 scaffold_2205 . exon 3303 3377 . - . ID=Phyra87582.1;Parent=Phyra87582;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2337 1 3450 scaffold_2337 . biological_region 1161 1165 0.999 + . logic_name=eponine scaffold_2337 . biological_region 1212 1217 0.999 + . logic_name=eponine scaffold_2337 . biological_region 1241 1241 0.999 - . logic_name=eponine scaffold_2337 . biological_region 1278 1280 0.999 - . logic_name=eponine scaffold_2337 . biological_region 1315 1319 0.999 + . logic_name=eponine scaffold_2337 . biological_region 1369 1371 0.999 + . logic_name=eponine scaffold_2337 . repeat_region 1650 2339 . ? . description=dust scaffold_2337 . repeat_region 2343 3450 . + . description=GypsyPi-1c_I-int scaffold_2337 ensembl protein_coding_gene 2663 2989 . + . ID=Phyra45232;biotype=protein_coding;external_name=gwEuk.2337.1.1;logic_name=jgi_phyra1 scaffold_2337 ensembl transcript 2663 2989 . + . ID=Phyra45232;Parent=Phyra45232;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2337 . CDS 2663 2989 . + 0 ID=Phyra45232;Parent=Phyra45232;rank=1 scaffold_2337 . exon 2663 2989 . + . ID=Phyra45232.1;Parent=Phyra45232;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2201 1 3451 scaffold_2201 . repeat_region 948 1708 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2202 1 3451 scaffold_2202 . repeat_region 1307 2663 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2209 1 3451 scaffold_2209 . repeat_region 1415 2602 . ? . description=dust scaffold_2209 ensembl protein_coding_gene 576 3400 . - . ID=Phyra87585;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2209000001;logic_name=jgi_phyra1 scaffold_2209 ensembl transcript 576 3400 . - . ID=Phyra87585;Parent=Phyra87585;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2209 . CDS 576 1324 . - 0 ID=Phyra87585;Parent=Phyra87585;rank=2 scaffold_2209 . exon 576 1324 . - . ID=Phyra87585.2;Parent=Phyra87585;constitutive=1;ensembl_phase=1;rank=2 scaffold_2209 . CDS 2639 3398 . - 0 ID=Phyra87585;Parent=Phyra87585;rank=1 scaffold_2209 . exon 2639 3400 . - . ID=Phyra87585.1;Parent=Phyra87585;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2261 1 3453 scaffold_2261 . repeat_region 1156 2314 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2196 1 3454 scaffold_2196 . repeat_region 910 2335 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2197 1 3454 scaffold_2197 . biological_region 850 854 0.999 + . logic_name=eponine scaffold_2197 . biological_region 891 897 0.999 - . logic_name=eponine scaffold_2197 . repeat_region 1384 2731 . ? . description=dust scaffold_2197 ensembl protein_coding_gene 2997 3441 . + . ID=Phyra87577;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2197000001;logic_name=jgi_phyra1 scaffold_2197 ensembl transcript 2997 3441 . + . ID=Phyra87577;Parent=Phyra87577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2197 . CDS 2997 3441 . + 0 ID=Phyra87577;Parent=Phyra87577;rank=1 scaffold_2197 . exon 2997 3441 . + . ID=Phyra87577.1;Parent=Phyra87577;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2199 1 3454 scaffold_2199 . repeat_region 820 914 . ? . description=trf scaffold_2199 . repeat_region 820 914 . ? . description=dust scaffold_2199 . biological_region 1113 1118 0.999 - . logic_name=eponine scaffold_2199 . biological_region 1165 1170 0.999 - . logic_name=eponine scaffold_2199 . repeat_region 1541 2392 . ? . description=dust scaffold_2199 ensembl protein_coding_gene 25 3191 . + . ID=Phyra87579;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2199000001;logic_name=jgi_phyra1 scaffold_2199 ensembl transcript 25 3191 . + . ID=Phyra87579;Parent=Phyra87579;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2199 . CDS 25 1495 . + 0 ID=Phyra87579;Parent=Phyra87579;rank=1 scaffold_2199 . exon 25 1495 . + . ID=Phyra87579.1;Parent=Phyra87579;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2199 . CDS 2411 2981 . + 0 ID=Phyra87579;Parent=Phyra87579;rank=2 scaffold_2199 . exon 2411 2981 . + . ID=Phyra87579.2;Parent=Phyra87579;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2199 . CDS 3146 3191 . + 0 ID=Phyra87579;Parent=Phyra87579;rank=3 scaffold_2199 . exon 3146 3191 . + . ID=Phyra87579.3;Parent=Phyra87579;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_2215 1 3454 scaffold_2215 . repeat_region 1220 2462 . ? . description=dust scaffold_2215 ensembl snoRNA_gene 2782 3006 . + . ID=EPrPRAG00000000060;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_2215 ensembl snoRNA 2782 3006 . + . ID=EPrPRAT00000000060;Parent=EPrPRAG00000000060;biotype=snoRNA;logic_name=ncrna_eg scaffold_2215 . exon 2782 3006 . + . ID=EPrPRAE00000000060;Parent=EPrPRAT00000000060;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2243 1 3454 scaffold_2243 . repeat_region 1076 2418 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2195 1 3455 scaffold_2195 . repeat_region 261 285 . ? . description=trf scaffold_2195 . repeat_region 909 2340 . ? . description=dust scaffold_2195 . repeat_region 2646 2688 . ? . description=trf scaffold_2195 ensembl protein_coding_gene 8 837 . - . ID=Phyra87575;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2195000001;logic_name=jgi_phyra1 scaffold_2195 ensembl transcript 8 837 . - . ID=Phyra87575;Parent=Phyra87575;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2195 . CDS 8 837 . - 0 ID=Phyra87575;Parent=Phyra87575;rank=1 scaffold_2195 . exon 8 837 . - . ID=Phyra87575.1;Parent=Phyra87575;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2195 ensembl protein_coding_gene 2689 3393 . - . ID=Phyra87576;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2195000002;logic_name=jgi_phyra1 scaffold_2195 ensembl transcript 2689 3393 . - . ID=Phyra87576;Parent=Phyra87576;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2195 . CDS 2689 3393 . - 0 ID=Phyra87576;Parent=Phyra87576;rank=1 scaffold_2195 . exon 2689 3393 . - . ID=Phyra87576.1;Parent=Phyra87576;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2331 1 3456 scaffold_2331 . repeat_region 1 92 . - . description=GypsyPi-1c_I-int scaffold_2331 . biological_region 624 628 0.999 - . logic_name=eponine scaffold_2331 . biological_region 663 665 0.999 + . logic_name=eponine scaffold_2331 . biological_region 702 702 0.999 + . logic_name=eponine scaffold_2331 . biological_region 778 782 0.999 - . logic_name=eponine scaffold_2331 . repeat_region 978 2335 . ? . description=dust scaffold_2331 . biological_region 2909 2913 0.999 - . logic_name=eponine scaffold_2331 ensembl protein_coding_gene 23 737 . - . ID=Phyra87655;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2331000001;logic_name=jgi_phyra1 scaffold_2331 ensembl transcript 23 737 . - . ID=Phyra87655;Parent=Phyra87655;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2331 . CDS 23 737 . - 0 ID=Phyra87655;Parent=Phyra87655;rank=1 scaffold_2331 . exon 23 737 . - . ID=Phyra87655.1;Parent=Phyra87655;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2192 1 3457 scaffold_2192 . repeat_region 1 949 . + . description=GypsyPi-1c_I-int scaffold_2192 . repeat_region 1269 2348 . ? . description=dust scaffold_2192 . repeat_region 2791 2809 . ? . description=dust scaffold_2192 ensembl protein_coding_gene 568 936 . + . ID=Phyra44694;biotype=protein_coding;external_name=gwEuk.2192.1.1;logic_name=jgi_phyra1 scaffold_2192 ensembl transcript 568 936 . + . ID=Phyra44694;Parent=Phyra44694;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2192 . CDS 568 936 . + 0 ID=Phyra44694;Parent=Phyra44694;rank=1 scaffold_2192 . exon 568 936 . + . ID=Phyra44694.1;Parent=Phyra44694;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2193 1 3457 scaffold_2193 . biological_region 305 309 0.999 + . logic_name=eponine scaffold_2193 . repeat_region 979 1559 . ? . description=trf scaffold_2193 . repeat_region 1561 2662 . ? . description=dust scaffold_2193 ensembl protein_coding_gene 2991 3455 . - . ID=Phyra44696;biotype=protein_coding;external_name=gwEuk.2193.2.1;logic_name=jgi_phyra1 scaffold_2193 ensembl transcript 2991 3455 . - . ID=Phyra44696;Parent=Phyra44696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2193 . CDS 2991 3455 . - 0 ID=Phyra44696;Parent=Phyra44696;rank=1 scaffold_2193 . exon 2991 3455 . - . ID=Phyra44696.1;Parent=Phyra44696;constitutive=1;rank=1 scaffold_2193 ensembl protein_coding_gene 13 1429 . + . ID=Phyra87574;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2193000001;logic_name=jgi_phyra1 scaffold_2193 ensembl transcript 13 1429 . + . ID=Phyra87574;Parent=Phyra87574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2193 . CDS 13 861 . + 0 ID=Phyra87574;Parent=Phyra87574;rank=1 scaffold_2193 . exon 13 861 . + . ID=Phyra87574.1;Parent=Phyra87574;constitutive=1;rank=1 scaffold_2193 . CDS 988 1319 . + 0 ID=Phyra87574;Parent=Phyra87574;rank=2 scaffold_2193 . exon 988 1319 . + . ID=Phyra87574.2;Parent=Phyra87574;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2193 . CDS 1387 1429 . + 0 ID=Phyra87574;Parent=Phyra87574;rank=3 scaffold_2193 . exon 1387 1429 . + . ID=Phyra87574.3;Parent=Phyra87574;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_2191 1 3458 scaffold_2191 . biological_region 612 614 0.999 - . logic_name=eponine scaffold_2191 . repeat_region 1600 2194 . ? . description=dust scaffold_2191 ensembl protein_coding_gene 482 895 . - . ID=Phyra87573;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2191000001;logic_name=jgi_phyra1 scaffold_2191 ensembl transcript 482 895 . - . ID=Phyra87573;Parent=Phyra87573;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2191 . CDS 482 895 . - 0 ID=Phyra87573;Parent=Phyra87573;rank=1 scaffold_2191 . exon 482 895 . - . ID=Phyra87573.1;Parent=Phyra87573;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2194 1 3458 scaffold_2194 . repeat_region 1105 2327 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2187 1 3459 scaffold_2187 . repeat_region 1109 1773 . ? . description=dust scaffold_2187 . repeat_region 3132 3141 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2188 1 3459 scaffold_2188 . repeat_region 1032 2277 . ? . description=dust scaffold_2188 . biological_region 2440 2442 0.999 - . logic_name=eponine scaffold_2188 . biological_region 2464 2466 0.999 - . logic_name=eponine scaffold_2188 . biological_region 2793 2794 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2189 1 3459 scaffold_2189 . biological_region 775 776 0.999 + . logic_name=eponine scaffold_2189 . repeat_region 915 1078 . ? . description=trf scaffold_2189 . repeat_region 1005 1081 . ? . description=trf scaffold_2189 . repeat_region 1484 2174 . ? . description=dust scaffold_2189 . repeat_region 2650 2806 . ? . description=trf scaffold_2189 . biological_region 2843 2844 0.999 - . logic_name=eponine scaffold_2189 ensembl protein_coding_gene 797 2969 . - . ID=Phyra87572;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2189000001;logic_name=jgi_phyra1 scaffold_2189 ensembl transcript 797 2969 . - . ID=Phyra87572;Parent=Phyra87572;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2189 . CDS 797 1392 . - 0 ID=Phyra87572;Parent=Phyra87572;rank=2 scaffold_2189 . exon 797 1392 . - . ID=Phyra87572.2;Parent=Phyra87572;constitutive=1;ensembl_phase=1;rank=2 scaffold_2189 . CDS 2294 2969 . - 0 ID=Phyra87572;Parent=Phyra87572;rank=1 scaffold_2189 . exon 2294 2969 . - . ID=Phyra87572.1;Parent=Phyra87572;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2190 1 3459 ##gff-version 3 ##sequence-region scaffold_2184 1 3461 scaffold_2184 . biological_region 812 816 0.999 + . logic_name=eponine scaffold_2184 . repeat_region 1238 2341 . ? . description=dust scaffold_2184 ensembl protein_coding_gene 61 3443 . + . ID=Phyra87571;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2184000001;logic_name=jgi_phyra1 scaffold_2184 ensembl transcript 61 3443 . + . ID=Phyra87571;Parent=Phyra87571;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2184 . CDS 61 1227 . + 0 ID=Phyra87571;Parent=Phyra87571;rank=1 scaffold_2184 . exon 61 1227 . + . ID=Phyra87571.1;Parent=Phyra87571;constitutive=1;rank=1 scaffold_2184 . CDS 2386 3443 . + 0 ID=Phyra87571;Parent=Phyra87571;rank=2 scaffold_2184 . exon 2386 3443 . + . ID=Phyra87571.2;Parent=Phyra87571;constitutive=1;ensembl_end_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_2180 1 3462 scaffold_2180 . biological_region 498 500 0.999 - . logic_name=eponine scaffold_2180 . biological_region 539 541 0.999 + . logic_name=eponine scaffold_2180 . repeat_region 1045 2286 . ? . description=dust scaffold_2180 . repeat_region 3372 3379 . ? . description=dust scaffold_2180 ensembl protein_coding_gene 1 2414 . + . ID=Phyra87568;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2180000001;logic_name=jgi_phyra1 scaffold_2180 ensembl transcript 1 2414 . + . ID=Phyra87568;Parent=Phyra87568;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2180 . exon 1 1035 . + . ID=Phyra87568.1;Parent=Phyra87568;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2180 . CDS 2 1035 . + 0 ID=Phyra87568;Parent=Phyra87568;rank=1 scaffold_2180 . CDS 2396 2414 . + 0 ID=Phyra87568;Parent=Phyra87568;rank=2 scaffold_2180 . exon 2396 2414 . + . ID=Phyra87568.2;Parent=Phyra87568;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_2182 1 3462 scaffold_2182 ensembl protein_coding_gene 2721 3441 . + . ID=Phyra87569;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2182000001;logic_name=jgi_phyra1 scaffold_2182 ensembl transcript 2721 3441 . + . ID=Phyra87569;Parent=Phyra87569;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2182 . CDS 2721 2792 . + 0 ID=Phyra87569;Parent=Phyra87569;rank=1 scaffold_2182 . exon 2721 2792 . + . ID=Phyra87569.1;Parent=Phyra87569;constitutive=1;rank=1 scaffold_2182 . CDS 2883 3441 . + 0 ID=Phyra87569;Parent=Phyra87569;rank=2 scaffold_2182 . exon 2883 3441 . + . ID=Phyra87569.2;Parent=Phyra87569;constitutive=1;ensembl_end_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2224 1 3462 scaffold_2224 . repeat_region 1048 2161 . ? . description=dust scaffold_2224 ensembl protein_coding_gene 336 3340 . + . ID=Phyra87597;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2224000001;logic_name=jgi_phyra1 scaffold_2224 ensembl transcript 336 3340 . + . ID=Phyra87597;Parent=Phyra87597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2224 . CDS 336 930 . + 0 ID=Phyra87597;Parent=Phyra87597;rank=1 scaffold_2224 . exon 336 930 . + . ID=Phyra87597.1;Parent=Phyra87597;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2224 . CDS 2267 2399 . + 0 ID=Phyra87597;Parent=Phyra87597;rank=2 scaffold_2224 . exon 2267 2399 . + . ID=Phyra87597.2;Parent=Phyra87597;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2224 . CDS 2457 3340 . + 0 ID=Phyra87597;Parent=Phyra87597;rank=3 scaffold_2224 . exon 2457 3340 . + . ID=Phyra87597.3;Parent=Phyra87597;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_2179 1 3463 scaffold_2179 . repeat_region 819 2046 . ? . description=dust scaffold_2179 . repeat_region 2498 2540 . ? . description=trf scaffold_2179 ensembl protein_coding_gene 14 3444 . - . ID=Phyra87567;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2179000001;logic_name=jgi_phyra1 scaffold_2179 ensembl transcript 14 3444 . - . ID=Phyra87567;Parent=Phyra87567;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2179 . CDS 14 745 . - 0 ID=Phyra87567;Parent=Phyra87567;rank=4 scaffold_2179 . exon 14 745 . - . ID=Phyra87567.4;Parent=Phyra87567;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_2179 . CDS 2049 2255 . - 0 ID=Phyra87567;Parent=Phyra87567;rank=3 scaffold_2179 . exon 2049 2255 . - . ID=Phyra87567.3;Parent=Phyra87567;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_2179 . CDS 2595 2971 . - 0 ID=Phyra87567;Parent=Phyra87567;rank=2 scaffold_2179 . exon 2595 2971 . - . ID=Phyra87567.2;Parent=Phyra87567;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2179 . CDS 3064 3444 . - 0 ID=Phyra87567;Parent=Phyra87567;rank=1 scaffold_2179 . exon 3064 3444 . - . ID=Phyra87567.1;Parent=Phyra87567;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2181 1 3464 scaffold_2181 . biological_region 73 77 0.999 - . logic_name=eponine scaffold_2181 . biological_region 112 114 0.999 + . logic_name=eponine scaffold_2181 . biological_region 151 151 0.999 + . logic_name=eponine scaffold_2181 . biological_region 175 180 0.999 - . logic_name=eponine scaffold_2181 . biological_region 227 231 0.999 - . logic_name=eponine scaffold_2181 . repeat_region 567 659 . - . description=GypsyPi-1c_I-int scaffold_2181 . repeat_region 1349 2210 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2185 1 3464 scaffold_2185 . repeat_region 1208 2140 . ? . description=dust scaffold_2185 . repeat_region 3089 3148 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2225 1 3464 scaffold_2225 . repeat_region 1067 2503 . ? . description=dust scaffold_2225 . repeat_region 3359 3368 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2177 1 3465 scaffold_2177 . repeat_region 1149 2257 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2291 1 3465 scaffold_2291 . repeat_region 836 1957 . ? . description=dust scaffold_2291 . repeat_region 2581 2589 . ? . description=dust scaffold_2291 ensembl protein_coding_gene 2262 2393 . - . ID=Phyra44966;biotype=protein_coding;external_name=gwEuk.2291.1.1;logic_name=jgi_phyra1 scaffold_2291 ensembl transcript 2262 2393 . - . ID=Phyra44966;Parent=Phyra44966;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2291 . CDS 2262 2393 . - 0 ID=Phyra44966;Parent=Phyra44966;rank=1 scaffold_2291 . exon 2262 2393 . - . ID=Phyra44966.1;Parent=Phyra44966;constitutive=1;rank=1 scaffold_2291 ensembl protein_coding_gene 205 804 . - . ID=Phyra87635;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2291000001;logic_name=jgi_phyra1 scaffold_2291 ensembl transcript 205 804 . - . ID=Phyra87635;Parent=Phyra87635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2291 . CDS 205 804 . - 0 ID=Phyra87635;Parent=Phyra87635;rank=1 scaffold_2291 . exon 205 804 . - . ID=Phyra87635.1;Parent=Phyra87635;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2174 1 3467 scaffold_2174 . repeat_region 801 2193 . ? . description=dust scaffold_2174 . repeat_region 2826 2837 . ? . description=dust scaffold_2174 ensembl protein_coding_gene 2195 2602 . + . ID=Phyra44672;biotype=protein_coding;external_name=gwEuk.2174.1.1;logic_name=jgi_phyra1 scaffold_2174 ensembl transcript 2195 2602 . + . ID=Phyra44672;Parent=Phyra44672;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2174 . CDS 2195 2602 . + 0 ID=Phyra44672;Parent=Phyra44672;rank=1 scaffold_2174 . exon 2195 2602 . + . ID=Phyra44672.1;Parent=Phyra44672;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2175 1 3467 scaffold_2175 . repeat_region 980 1924 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2176 1 3467 scaffold_2176 . repeat_region 1163 1627 . ? . description=dust scaffold_2176 . repeat_region 1705 1755 . ? . description=dust scaffold_2176 . repeat_region 1866 1922 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2198 1 3468 scaffold_2198 . biological_region 531 533 0.999 - . logic_name=eponine scaffold_2198 . repeat_region 1961 2010 . ? . description=dust scaffold_2198 ensembl protein_coding_gene 631 1470 . - . ID=Phyra87578;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2198000001;logic_name=jgi_phyra1 scaffold_2198 ensembl transcript 631 1470 . - . ID=Phyra87578;Parent=Phyra87578;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2198 . CDS 631 1470 . - 0 ID=Phyra87578;Parent=Phyra87578;rank=1 scaffold_2198 . exon 631 1470 . - . ID=Phyra87578.1;Parent=Phyra87578;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2166 1 3471 scaffold_2166 . repeat_region 972 2140 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2170 1 3471 ##gff-version 3 ##sequence-region scaffold_2169 1 3472 scaffold_2169 . repeat_region 1391 2646 . ? . description=dust scaffold_2169 . repeat_region 3168 3182 . ? . description=dust scaffold_2169 ensembl protein_coding_gene 831 1391 . - . ID=Phyra44662;biotype=protein_coding;external_name=gwEuk.2169.13.1;logic_name=jgi_phyra1 scaffold_2169 ensembl transcript 831 1391 . - . ID=Phyra44662;Parent=Phyra44662;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2169 . CDS 831 1391 . - 0 ID=Phyra44662;Parent=Phyra44662;rank=1 scaffold_2169 . exon 831 1391 . - . ID=Phyra44662.1;Parent=Phyra44662;constitutive=1;rank=1 scaffold_2169 ensembl protein_coding_gene 103 417 . + . ID=Phyra72533;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2169000001;logic_name=jgi_phyra1 scaffold_2169 ensembl transcript 103 417 . + . ID=Phyra72533;Parent=Phyra72533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2169 . CDS 103 417 . + 0 ID=Phyra72533;Parent=Phyra72533;rank=1 scaffold_2169 . exon 103 417 . + . ID=Phyra72533.1;Parent=Phyra72533;constitutive=1;rank=1 scaffold_2169 ensembl protein_coding_gene 2653 3126 . + . ID=Phyra72535;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2169000003;logic_name=jgi_phyra1 scaffold_2169 ensembl transcript 2653 3126 . + . ID=Phyra72535;Parent=Phyra72535;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2169 . CDS 2653 3126 . + 0 ID=Phyra72535;Parent=Phyra72535;rank=1 scaffold_2169 . exon 2653 3126 . + . ID=Phyra72535.1;Parent=Phyra72535;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2168 1 3473 scaffold_2168 . biological_region 1220 1224 0.999 + . logic_name=eponine scaffold_2168 . repeat_region 1288 1367 . ? . description=trf scaffold_2168 . repeat_region 1579 2067 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2173 1 3473 scaffold_2173 . repeat_region 1033 2156 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2329 1 3476 scaffold_2329 . repeat_region 178 978 . + . description=GypsyPi-1c_I-int scaffold_2329 . repeat_region 979 2301 . ? . description=dust scaffold_2329 . biological_region 2378 2382 0.999 - . logic_name=eponine scaffold_2329 . biological_region 2456 2459 0.999 + . logic_name=eponine scaffold_2329 . biological_region 2483 2486 0.999 + . logic_name=eponine scaffold_2329 . repeat_region 2500 3213 . + . description=GypsyPi-1c_I-int scaffold_2329 . biological_region 2599 2603 0.999 - . logic_name=eponine scaffold_2329 ensembl protein_coding_gene 2761 3084 . + . ID=Phyra45215;biotype=protein_coding;external_name=gwEuk.2329.2.1;logic_name=jgi_phyra1 scaffold_2329 ensembl transcript 2761 3084 . + . ID=Phyra45215;Parent=Phyra45215;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2329 . CDS 2761 3084 . + 0 ID=Phyra45215;Parent=Phyra45215;rank=1 scaffold_2329 . exon 2761 3084 . + . ID=Phyra45215.1;Parent=Phyra45215;constitutive=1;rank=1 scaffold_2329 ensembl protein_coding_gene 64 864 . + . ID=Phyra87654;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2329000001;logic_name=jgi_phyra1 scaffold_2329 ensembl transcript 64 864 . + . ID=Phyra87654;Parent=Phyra87654;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2329 . exon 64 649 . + . ID=Phyra87654.1;Parent=Phyra87654;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2329 . CDS 66 649 . + 0 ID=Phyra87654;Parent=Phyra87654;rank=1 scaffold_2329 . CDS 819 864 . + 0 ID=Phyra87654;Parent=Phyra87654;rank=2 scaffold_2329 . exon 819 864 . + . ID=Phyra87654.2;Parent=Phyra87654;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_2163 1 3477 scaffold_2163 . repeat_region 1017 1059 . ? . description=trf scaffold_2163 . repeat_region 1423 2584 . ? . description=dust scaffold_2163 ensembl protein_coding_gene 32 748 . + . ID=Phyra87557;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2163000001;logic_name=jgi_phyra1 scaffold_2163 ensembl transcript 32 748 . + . ID=Phyra87557;Parent=Phyra87557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2163 . exon 32 710 . + . ID=Phyra87557.1;Parent=Phyra87557;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2163 . CDS 34 710 . + 0 ID=Phyra87557;Parent=Phyra87557;rank=1 scaffold_2163 . CDS 736 748 . + 0 ID=Phyra87557;Parent=Phyra87557;rank=2 scaffold_2163 . exon 736 748 . + . ID=Phyra87557.2;Parent=Phyra87557;constitutive=1;ensembl_phase=2;rank=2 scaffold_2163 ensembl protein_coding_gene 1097 3477 . - . ID=Phyra87558;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2163000002;logic_name=jgi_phyra1 scaffold_2163 ensembl transcript 1097 3477 . - . ID=Phyra87558;Parent=Phyra87558;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2163 . CDS 1097 1418 . - 0 ID=Phyra87558;Parent=Phyra87558;rank=2 scaffold_2163 . exon 1097 1418 . - . ID=Phyra87558.2;Parent=Phyra87558;constitutive=1;ensembl_phase=2;rank=2 scaffold_2163 . CDS 2593 3476 . - 0 ID=Phyra87558;Parent=Phyra87558;rank=1 scaffold_2163 . exon 2593 3477 . - . ID=Phyra87558.1;Parent=Phyra87558;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2164 1 3477 scaffold_2164 . repeat_region 1100 2478 . ? . description=dust scaffold_2164 . repeat_region 2498 2890 . + . description=GypsyPi-1c_I-int scaffold_2164 . repeat_region 3118 3474 . + . description=GypsyPi-1c_I-int scaffold_2164 ensembl pseudogene 2541 2853 . + . ID=Phyra44645;biotype=pseudogene;external_name=gwEuk.2164.1.1;logic_name=jgi_phyra1 scaffold_2164 ensembl pseudogene 2541 2853 . + . ID=Phyra44645;Parent=Phyra44645;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_2164 . exon 2541 2853 . + . ID=Phyra44645.1;Parent=Phyra44645;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2165 1 3478 scaffold_2165 . repeat_region 975 2201 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2296 1 3480 scaffold_2296 . biological_region 523 524 0.999 + . logic_name=eponine scaffold_2296 . repeat_region 1152 1832 . ? . description=dust scaffold_2296 . biological_region 3173 3177 0.999 - . logic_name=eponine scaffold_2296 ensembl protein_coding_gene 60 403 . - . ID=Phyra87638;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2296000001;logic_name=jgi_phyra1 scaffold_2296 ensembl transcript 60 403 . - . ID=Phyra87638;Parent=Phyra87638;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2296 . CDS 60 403 . - 0 ID=Phyra87638;Parent=Phyra87638;rank=1 scaffold_2296 . exon 60 403 . - . ID=Phyra87638.1;Parent=Phyra87638;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2160 1 3481 scaffold_2160 . repeat_region 867 927 . ? . description=trf scaffold_2160 . repeat_region 1230 2448 . ? . description=dust scaffold_2160 . biological_region 2931 2935 0.999 + . logic_name=eponine scaffold_2160 . repeat_region 3046 3076 . ? . description=trf scaffold_2160 ensembl protein_coding_gene 25 3451 . - . ID=Phyra87554;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2160000001;logic_name=jgi_phyra1 scaffold_2160 ensembl transcript 25 3451 . - . ID=Phyra87554;Parent=Phyra87554;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2160 . CDS 25 591 . - 0 ID=Phyra87554;Parent=Phyra87554;rank=3 scaffold_2160 . exon 25 591 . - . ID=Phyra87554.3;Parent=Phyra87554;constitutive=1;rank=3 scaffold_2160 . CDS 1003 1135 . - 0 ID=Phyra87554;Parent=Phyra87554;rank=2 scaffold_2160 . exon 1003 1135 . - . ID=Phyra87554.2;Parent=Phyra87554;constitutive=1;ensembl_phase=2;rank=2 scaffold_2160 . CDS 2469 3451 . - 0 ID=Phyra87554;Parent=Phyra87554;rank=1 scaffold_2160 . exon 2469 3451 . - . ID=Phyra87554.1;Parent=Phyra87554;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2157 1 3482 scaffold_2157 . biological_region 513 517 0.999 + . logic_name=eponine scaffold_2157 . repeat_region 627 657 . ? . description=trf scaffold_2157 . repeat_region 969 2254 . ? . description=dust scaffold_2157 . biological_region 2312 2316 0.999 + . logic_name=eponine scaffold_2157 . biological_region 2331 2334 0.999 + . logic_name=eponine scaffold_2157 . repeat_region 2502 2542 . ? . description=trf scaffold_2157 ensembl protein_coding_gene 8 885 . - . ID=Phyra87552;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2157000001;logic_name=jgi_phyra1 scaffold_2157 ensembl transcript 8 885 . - . ID=Phyra87552;Parent=Phyra87552;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2157 . CDS 8 885 . - 0 ID=Phyra87552;Parent=Phyra87552;rank=1 scaffold_2157 . exon 8 885 . - . ID=Phyra87552.1;Parent=Phyra87552;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2157 ensembl protein_coding_gene 2471 3475 . + . ID=Phyra87553;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2157000002;logic_name=jgi_phyra1 scaffold_2157 ensembl transcript 2471 3475 . + . ID=Phyra87553;Parent=Phyra87553;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2157 . CDS 2471 3475 . + 0 ID=Phyra87553;Parent=Phyra87553;rank=1 scaffold_2157 . exon 2471 3475 . + . ID=Phyra87553.1;Parent=Phyra87553;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2156 1 3483 scaffold_2156 . repeat_region 1711 2596 . ? . description=dust scaffold_2156 . repeat_region 2867 3481 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2153 1 3484 scaffold_2153 . repeat_region 944 2107 . ? . description=dust scaffold_2153 . repeat_region 2172 2321 . ? . description=trf scaffold_2153 . biological_region 2543 2547 0.999 - . logic_name=eponine scaffold_2153 . repeat_region 3407 3429 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2149 1 3485 scaffold_2149 . repeat_region 1135 2419 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2151 1 3485 scaffold_2151 . repeat_region 1173 2619 . ? . description=dust scaffold_2151 . repeat_region 2669 2692 . ? . description=dust scaffold_2151 . repeat_region 2695 2704 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2152 1 3485 scaffold_2152 . biological_region 82 86 0.999 - . logic_name=eponine scaffold_2152 . repeat_region 1042 1084 . ? . description=trf scaffold_2152 . biological_region 2597 2597 0.999 - . logic_name=eponine scaffold_2152 . repeat_region 3364 3406 . ? . description=trf scaffold_2152 ensembl protein_coding_gene 14 779 . - . ID=Phyra87550;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2152000001;logic_name=jgi_phyra1 scaffold_2152 ensembl transcript 14 779 . - . ID=Phyra87550;Parent=Phyra87550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2152 . CDS 14 779 . - 0 ID=Phyra87550;Parent=Phyra87550;rank=1 scaffold_2152 . exon 14 779 . - . ID=Phyra87550.1;Parent=Phyra87550;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2152 ensembl protein_coding_gene 2139 3199 . + . ID=Phyra87551;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2152000002;logic_name=jgi_phyra1 scaffold_2152 ensembl transcript 2139 3199 . + . ID=Phyra87551;Parent=Phyra87551;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2152 . CDS 2139 3033 . + 0 ID=Phyra87551;Parent=Phyra87551;rank=1 scaffold_2152 . exon 2139 3033 . + . ID=Phyra87551.1;Parent=Phyra87551;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2152 . CDS 3156 3199 . + 0 ID=Phyra87551;Parent=Phyra87551;rank=2 scaffold_2152 . exon 3156 3199 . + . ID=Phyra87551.2;Parent=Phyra87551;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2154 1 3485 scaffold_2154 . repeat_region 1156 2141 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2150 1 3486 scaffold_2150 . biological_region 7 7 0.999 + . logic_name=eponine scaffold_2150 . biological_region 75 77 0.999 + . logic_name=eponine scaffold_2150 . biological_region 92 103 0.999 + . logic_name=eponine scaffold_2150 . biological_region 171 177 0.999 - . logic_name=eponine scaffold_2150 . biological_region 199 203 0.999 - . logic_name=eponine scaffold_2150 . biological_region 212 217 0.999 + . logic_name=eponine scaffold_2150 . biological_region 225 232 0.999 + . logic_name=eponine scaffold_2150 . biological_region 243 248 0.999 - . logic_name=eponine scaffold_2150 . biological_region 253 255 0.999 + . logic_name=eponine scaffold_2150 . biological_region 300 305 0.999 + . logic_name=eponine scaffold_2150 . biological_region 595 598 0.999 + . logic_name=eponine scaffold_2150 . repeat_region 1111 2588 . ? . description=dust scaffold_2150 ensembl protein_coding_gene 1 3452 . + . ID=Phyra87549;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2150000001;logic_name=jgi_phyra1 scaffold_2150 ensembl transcript 1 3452 . + . ID=Phyra87549;Parent=Phyra87549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2150 . exon 1 1095 . + . ID=Phyra87549.1;Parent=Phyra87549;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_2150 . CDS 3 1095 . + 0 ID=Phyra87549;Parent=Phyra87549;rank=1 scaffold_2150 . CDS 2613 3452 . + 0 ID=Phyra87549;Parent=Phyra87549;rank=2 scaffold_2150 . exon 2613 3452 . + . ID=Phyra87549.2;Parent=Phyra87549;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2147 1 3487 scaffold_2147 . biological_region 446 451 0.999 - . logic_name=eponine scaffold_2147 . biological_region 501 505 0.999 + . logic_name=eponine scaffold_2147 . biological_region 582 584 0.999 - . logic_name=eponine scaffold_2147 . biological_region 1082 1088 0.999 - . logic_name=eponine scaffold_2147 . repeat_region 1424 1770 . ? . description=dust scaffold_2147 ensembl protein_coding_gene 58 1224 . - . ID=Phyra72532;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2147000001;logic_name=jgi_phyra1 scaffold_2147 ensembl transcript 58 1224 . - . ID=Phyra72532;Parent=Phyra72532;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2147 . CDS 58 1224 . - 0 ID=Phyra72532;Parent=Phyra72532;rank=1 scaffold_2147 . exon 58 1224 . - . ID=Phyra72532.1;Parent=Phyra72532;constitutive=1;rank=1 scaffold_2147 ensembl protein_coding_gene 2096 3376 . + . ID=Phyra87548;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2147000002;logic_name=jgi_phyra1 scaffold_2147 ensembl transcript 2096 3376 . + . ID=Phyra87548;Parent=Phyra87548;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2147 . CDS 2096 3376 . + 0 ID=Phyra87548;Parent=Phyra87548;rank=1 scaffold_2147 . exon 2096 3376 . + . ID=Phyra87548.1;Parent=Phyra87548;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2143 1 3490 scaffold_2143 . repeat_region 1134 2302 . ? . description=dust scaffold_2143 ensembl protein_coding_gene 267 1021 . + . ID=Phyra87544;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2143000001;logic_name=jgi_phyra1 scaffold_2143 ensembl transcript 267 1021 . + . ID=Phyra87544;Parent=Phyra87544;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2143 . CDS 267 873 . + 0 ID=Phyra87544;Parent=Phyra87544;rank=1 scaffold_2143 . exon 267 873 . + . ID=Phyra87544.1;Parent=Phyra87544;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2143 . CDS 915 1021 . + 0 ID=Phyra87544;Parent=Phyra87544;rank=2 scaffold_2143 . exon 915 1021 . + . ID=Phyra87544.2;Parent=Phyra87544;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2144 1 3491 scaffold_2144 . biological_region 42 45 0.999 - . logic_name=eponine scaffold_2144 . repeat_region 1318 2387 . ? . description=dust scaffold_2144 ensembl protein_coding_gene 182 936 . + . ID=Phyra87545;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2144000001;logic_name=jgi_phyra1 scaffold_2144 ensembl transcript 182 936 . + . ID=Phyra87545;Parent=Phyra87545;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2144 . CDS 182 219 . + 0 ID=Phyra87545;Parent=Phyra87545;rank=1 scaffold_2144 . exon 182 219 . + . ID=Phyra87545.1;Parent=Phyra87545;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2144 . CDS 294 675 . + 0 ID=Phyra87545;Parent=Phyra87545;rank=2 scaffold_2144 . exon 294 675 . + . ID=Phyra87545.2;Parent=Phyra87545;constitutive=1;ensembl_phase=2;rank=2 scaffold_2144 . CDS 757 828 . + 0 ID=Phyra87545;Parent=Phyra87545;rank=3 scaffold_2144 . exon 757 828 . + . ID=Phyra87545.3;Parent=Phyra87545;constitutive=1;rank=3 scaffold_2144 . CDS 901 936 . + 0 ID=Phyra87545;Parent=Phyra87545;rank=4 scaffold_2144 . exon 901 936 . + . ID=Phyra87545.4;Parent=Phyra87545;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_2142 1 3492 scaffold_2142 . repeat_region 1336 2189 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2161 1 3493 scaffold_2161 . biological_region 722 724 0.999 - . logic_name=eponine scaffold_2161 . biological_region 815 816 0.999 + . logic_name=eponine scaffold_2161 . biological_region 906 909 0.999 - . logic_name=eponine scaffold_2161 . repeat_region 1315 2380 . ? . description=dust scaffold_2161 . repeat_region 2687 2730 . ? . description=trf scaffold_2161 ensembl protein_coding_gene 246 915 . + . ID=Phyra87555;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2161000001;logic_name=jgi_phyra1 scaffold_2161 ensembl transcript 246 915 . + . ID=Phyra87555;Parent=Phyra87555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2161 . CDS 246 844 . + 0 ID=Phyra87555;Parent=Phyra87555;rank=1 scaffold_2161 . exon 246 844 . + . ID=Phyra87555.1;Parent=Phyra87555;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2161 . CDS 894 915 . + 0 ID=Phyra87555;Parent=Phyra87555;rank=2 scaffold_2161 . exon 894 915 . + . ID=Phyra87555.2;Parent=Phyra87555;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_2141 1 3495 scaffold_2141 . repeat_region 1356 2308 . ? . description=dust scaffold_2141 ensembl protein_coding_gene 637 1355 . - . ID=Phyra87543;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2141000001;logic_name=jgi_phyra1 scaffold_2141 ensembl transcript 637 1355 . - . ID=Phyra87543;Parent=Phyra87543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2141 . CDS 637 1028 . - 0 ID=Phyra87543;Parent=Phyra87543;rank=2 scaffold_2141 . exon 637 1028 . - . ID=Phyra87543.2;Parent=Phyra87543;constitutive=1;ensembl_phase=1;rank=2 scaffold_2141 . CDS 1310 1355 . - 0 ID=Phyra87543;Parent=Phyra87543;rank=1 scaffold_2141 . exon 1310 1355 . - . ID=Phyra87543.1;Parent=Phyra87543;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2138 1 3496 scaffold_2138 . repeat_region 1278 2217 . ? . description=dust scaffold_2138 . biological_region 2577 2579 0.999 + . logic_name=eponine scaffold_2138 ensembl protein_coding_gene 41 1077 . - . ID=Phyra87541;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2138000001;logic_name=jgi_phyra1 scaffold_2138 ensembl transcript 41 1077 . - . ID=Phyra87541;Parent=Phyra87541;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2138 . CDS 41 714 . - 0 ID=Phyra87541;Parent=Phyra87541;rank=2 scaffold_2138 . exon 41 714 . - . ID=Phyra87541.2;Parent=Phyra87541;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2138 . CDS 766 1077 . - 0 ID=Phyra87541;Parent=Phyra87541;rank=1 scaffold_2138 . exon 766 1077 . - . ID=Phyra87541.1;Parent=Phyra87541;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2139 1 3496 scaffold_2139 . repeat_region 192 278 . ? . description=trf scaffold_2139 . repeat_region 1244 2125 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2135 1 3497 scaffold_2135 . biological_region 952 953 0.999 + . logic_name=eponine scaffold_2135 . repeat_region 1167 1555 . ? . description=trf scaffold_2135 . repeat_region 1556 2453 . ? . description=dust scaffold_2135 ensembl protein_coding_gene 2469 3497 . - . ID=Phyra44614;biotype=protein_coding;external_name=gwEuk.2135.3.1;logic_name=jgi_phyra1 scaffold_2135 ensembl transcript 2469 3497 . - . ID=Phyra44614;Parent=Phyra44614;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2135 . CDS 2469 2716 . - 0 ID=Phyra44614;Parent=Phyra44614;rank=2 scaffold_2135 . exon 2469 2716 . - . ID=Phyra44614.2;Parent=Phyra44614;constitutive=1;ensembl_phase=1;rank=2 scaffold_2135 . CDS 3074 3497 . - 0 ID=Phyra44614;Parent=Phyra44614;rank=1 scaffold_2135 . exon 3074 3497 . - . ID=Phyra44614.1;Parent=Phyra44614;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2135 ensembl protein_coding_gene 9 581 . - . ID=Phyra87538;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2135000001;logic_name=jgi_phyra1 scaffold_2135 ensembl transcript 9 581 . - . ID=Phyra87538;Parent=Phyra87538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2135 . CDS 9 581 . - 0 ID=Phyra87538;Parent=Phyra87538;rank=1 scaffold_2135 . exon 9 581 . - . ID=Phyra87538.1;Parent=Phyra87538;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2134 1 3498 scaffold_2134 . repeat_region 737 2019 . ? . description=dust scaffold_2134 ensembl protein_coding_gene 6 713 . - . ID=Phyra87537;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2134000001;logic_name=jgi_phyra1 scaffold_2134 ensembl transcript 6 713 . - . ID=Phyra87537;Parent=Phyra87537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2134 . CDS 6 713 . - 0 ID=Phyra87537;Parent=Phyra87537;rank=1 scaffold_2134 . exon 6 713 . - . ID=Phyra87537.1;Parent=Phyra87537;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2137 1 3498 scaffold_2137 . repeat_region 43 121 . + . description=GypsyPi-1c_LTR scaffold_2137 . repeat_region 1280 2072 . ? . description=dust scaffold_2137 ensembl protein_coding_gene 2375 3394 . - . ID=Phyra87540;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2137000001;logic_name=jgi_phyra1 scaffold_2137 ensembl transcript 2375 3394 . - . ID=Phyra87540;Parent=Phyra87540;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2137 . CDS 2375 2818 . - 0 ID=Phyra87540;Parent=Phyra87540;rank=3 scaffold_2137 . exon 2375 2818 . - . ID=Phyra87540.3;Parent=Phyra87540;constitutive=1;rank=3 scaffold_2137 . CDS 2969 3229 . - 0 ID=Phyra87540;Parent=Phyra87540;rank=2 scaffold_2137 . exon 2969 3229 . - . ID=Phyra87540.2;Parent=Phyra87540;constitutive=1;rank=2 scaffold_2137 . CDS 3326 3394 . - 0 ID=Phyra87540;Parent=Phyra87540;rank=1 scaffold_2137 . exon 3326 3394 . - . ID=Phyra87540.1;Parent=Phyra87540;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2133 1 3499 scaffold_2133 . repeat_region 1350 2741 . ? . description=dust scaffold_2133 . biological_region 3135 3139 0.999 - . logic_name=eponine scaffold_2133 . repeat_region 3442 3486 . ? . description=trf scaffold_2133 ensembl protein_coding_gene 4 3355 . - . ID=Phyra87536;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2133000001;logic_name=jgi_phyra1 scaffold_2133 ensembl transcript 4 3355 . - . ID=Phyra87536;Parent=Phyra87536;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2133 . CDS 4 1344 . - 0 ID=Phyra87536;Parent=Phyra87536;rank=2 scaffold_2133 . exon 4 1344 . - . ID=Phyra87536.2;Parent=Phyra87536;constitutive=1;rank=2 scaffold_2133 . CDS 2753 3355 . - 0 ID=Phyra87536;Parent=Phyra87536;rank=1 scaffold_2133 . exon 2753 3355 . - . ID=Phyra87536.1;Parent=Phyra87536;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2254 1 3499 scaffold_2254 . repeat_region 1183 2264 . ? . description=dust scaffold_2254 . repeat_region 2269 3287 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_2131 1 3500 scaffold_2131 . biological_region 879 882 0.999 + . logic_name=eponine scaffold_2131 . repeat_region 1845 1887 . ? . description=trf scaffold_2131 . repeat_region 1986 2032 . ? . description=trf scaffold_2131 . repeat_region 2391 2618 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2129 1 3504 scaffold_2129 . repeat_region 1070 2365 . ? . description=dust scaffold_2129 . repeat_region 2917 2964 . ? . description=dust scaffold_2129 . repeat_region 2920 2947 . ? . description=trf scaffold_2129 . biological_region 3336 3338 0.999 - . logic_name=eponine scaffold_2129 ensembl protein_coding_gene 58 745 . - . ID=Phyra87533;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2129000001;logic_name=jgi_phyra1 scaffold_2129 ensembl transcript 58 745 . - . ID=Phyra87533;Parent=Phyra87533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2129 . CDS 58 745 . - 0 ID=Phyra87533;Parent=Phyra87533;rank=1 scaffold_2129 . exon 58 745 . - . ID=Phyra87533.1;Parent=Phyra87533;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2129 ensembl protein_coding_gene 2947 3501 . + . ID=Phyra87534;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2129000002;logic_name=jgi_phyra1 scaffold_2129 ensembl transcript 2947 3501 . + . ID=Phyra87534;Parent=Phyra87534;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2129 . CDS 2947 3501 . + 0 ID=Phyra87534;Parent=Phyra87534;rank=1 scaffold_2129 . exon 2947 3501 . + . ID=Phyra87534.1;Parent=Phyra87534;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2124 1 3505 scaffold_2124 . biological_region 1181 1183 0.999 + . logic_name=eponine scaffold_2124 . repeat_region 1383 2386 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2132 1 3505 scaffold_2132 . biological_region 63 67 0.999 + . logic_name=eponine scaffold_2132 . biological_region 1400 1401 0.999 - . logic_name=eponine scaffold_2132 . biological_region 1415 1420 0.999 - . logic_name=eponine scaffold_2132 . biological_region 1433 1437 0.999 - . logic_name=eponine scaffold_2132 . repeat_region 1507 2613 . ? . description=dust scaffold_2132 ensembl protein_coding_gene 3077 3494 . + . ID=Phyra87535;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2132000001;logic_name=jgi_phyra1 scaffold_2132 ensembl transcript 3077 3494 . + . ID=Phyra87535;Parent=Phyra87535;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2132 . CDS 3077 3494 . + 0 ID=Phyra87535;Parent=Phyra87535;rank=1 scaffold_2132 . exon 3077 3494 . + . ID=Phyra87535.1;Parent=Phyra87535;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2126 1 3506 scaffold_2126 . repeat_region 617 627 . ? . description=dust scaffold_2126 . repeat_region 1348 2300 . ? . description=dust scaffold_2126 . biological_region 2656 2658 0.999 + . logic_name=eponine scaffold_2126 . biological_region 2723 2728 0.999 - . logic_name=eponine scaffold_2126 . biological_region 2757 2762 0.999 - . logic_name=eponine scaffold_2126 . biological_region 2778 2783 0.999 + . logic_name=eponine scaffold_2126 ensembl protein_coding_gene 2301 3506 . - . ID=Phyra44599;biotype=protein_coding;external_name=gwEuk.2126.4.1;logic_name=jgi_phyra1 scaffold_2126 ensembl transcript 2301 3506 . - . ID=Phyra44599;Parent=Phyra44599;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2126 . CDS 2301 3506 . - 0 ID=Phyra44599;Parent=Phyra44599;rank=1 scaffold_2126 . exon 2301 3506 . - . ID=Phyra44599.1;Parent=Phyra44599;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2127 1 3506 scaffold_2127 . repeat_region 59 99 . ? . description=trf scaffold_2127 . repeat_region 1156 2288 . ? . description=dust scaffold_2127 . repeat_region 2606 2648 . ? . description=trf scaffold_2127 ensembl protein_coding_gene 2771 3445 . - . ID=Phyra44605;biotype=protein_coding;external_name=gwEuk.2127.5.1;logic_name=jgi_phyra1 scaffold_2127 ensembl transcript 2771 3445 . - . ID=Phyra44605;Parent=Phyra44605;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2127 . CDS 2771 3445 . - 0 ID=Phyra44605;Parent=Phyra44605;rank=1 scaffold_2127 . exon 2771 3445 . - . ID=Phyra44605.1;Parent=Phyra44605;constitutive=1;rank=1 scaffold_2127 ensembl protein_coding_gene 28 1142 . + . ID=Phyra87531;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2127000001;logic_name=jgi_phyra1 scaffold_2127 ensembl transcript 28 1142 . + . ID=Phyra87531;Parent=Phyra87531;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2127 . CDS 28 1061 . + 0 ID=Phyra87531;Parent=Phyra87531;rank=1 scaffold_2127 . exon 28 1061 . + . ID=Phyra87531.1;Parent=Phyra87531;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2127 . CDS 1106 1142 . + 0 ID=Phyra87531;Parent=Phyra87531;rank=2 scaffold_2127 . exon 1106 1142 . + . ID=Phyra87531.2;Parent=Phyra87531;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_2120 1 3508 scaffold_2120 . repeat_region 107 520 . + . description=GypsyPi-1c_I-int scaffold_2120 . biological_region 146 149 0.999 - . logic_name=eponine scaffold_2120 . biological_region 650 653 0.999 - . logic_name=eponine scaffold_2120 . biological_region 687 692 0.999 - . logic_name=eponine scaffold_2120 . repeat_region 703 710 . ? . description=dust scaffold_2120 . biological_region 765 770 0.999 + . logic_name=eponine scaffold_2120 . biological_region 794 795 0.999 + . logic_name=eponine scaffold_2120 . repeat_region 810 1474 . + . description=GypsyPi-1c_I-int scaffold_2120 . biological_region 909 912 0.999 - . logic_name=eponine scaffold_2120 . repeat_region 1475 2387 . ? . description=dust scaffold_2120 . biological_region 2553 2558 0.999 + . logic_name=eponine scaffold_2120 . biological_region 2608 2612 0.999 + . logic_name=eponine scaffold_2120 . repeat_region 2613 2637 . ? . description=trf scaffold_2120 . biological_region 2658 2664 0.999 - . logic_name=eponine scaffold_2120 . biological_region 3019 3024 0.999 - . logic_name=eponine scaffold_2120 . biological_region 3073 3075 0.999 + . logic_name=eponine scaffold_2120 . biological_region 3136 3142 0.999 + . logic_name=eponine scaffold_2120 . biological_region 3209 3216 0.999 - . logic_name=eponine scaffold_2120 . biological_region 3246 3250 0.999 - . logic_name=eponine scaffold_2120 . biological_region 3301 3305 0.999 + . logic_name=eponine scaffold_2120 ensembl protein_coding_gene 1071 1457 . + . ID=Phyra44591;biotype=protein_coding;external_name=gwEuk.2120.2.1;logic_name=jgi_phyra1 scaffold_2120 ensembl transcript 1071 1457 . + . ID=Phyra44591;Parent=Phyra44591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2120 . CDS 1071 1457 . + 0 ID=Phyra44591;Parent=Phyra44591;rank=1 scaffold_2120 . exon 1071 1457 . + . ID=Phyra44591.1;Parent=Phyra44591;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2121 1 3508 scaffold_2121 . repeat_region 1015 1023 . ? . description=dust scaffold_2121 . repeat_region 1589 2748 . ? . description=dust scaffold_2121 . repeat_region 3129 3143 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2122 1 3508 scaffold_2122 . repeat_region 2 388 . + . description=GypsyPi-1c_I-int scaffold_2122 . repeat_region 643 922 . + . description=GypsyPi-1c_I-int scaffold_2122 . biological_region 996 998 0.999 - . logic_name=eponine scaffold_2122 . biological_region 1038 1039 0.999 - . logic_name=eponine scaffold_2122 . repeat_region 1175 1188 . ? . description=dust scaffold_2122 . repeat_region 1282 2592 . ? . description=dust scaffold_2122 ensembl protein_coding_gene 34 267 . + . ID=Phyra44594;biotype=protein_coding;external_name=gwEuk.2122.1.1;logic_name=jgi_phyra1 scaffold_2122 ensembl transcript 34 267 . + . ID=Phyra44594;Parent=Phyra44594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2122 . CDS 34 267 . + 0 ID=Phyra44594;Parent=Phyra44594;rank=1 scaffold_2122 . exon 34 267 . + . ID=Phyra44594.1;Parent=Phyra44594;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2125 1 3508 scaffold_2125 . repeat_region 1446 2506 . ? . description=dust scaffold_2125 ensembl protein_coding_gene 434 3147 . - . ID=Phyra87529;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2125000001;logic_name=jgi_phyra1 scaffold_2125 ensembl transcript 434 3147 . - . ID=Phyra87529;Parent=Phyra87529;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2125 . CDS 434 1399 . - 0 ID=Phyra87529;Parent=Phyra87529;rank=3 scaffold_2125 . exon 434 1399 . - . ID=Phyra87529.3;Parent=Phyra87529;constitutive=1;rank=3 scaffold_2125 . CDS 2509 2985 . - 0 ID=Phyra87529;Parent=Phyra87529;rank=2 scaffold_2125 . exon 2509 2985 . - . ID=Phyra87529.2;Parent=Phyra87529;constitutive=1;rank=2 scaffold_2125 . CDS 3076 3147 . - 0 ID=Phyra87529;Parent=Phyra87529;rank=1 scaffold_2125 . exon 3076 3147 . - . ID=Phyra87529.1;Parent=Phyra87529;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2214 1 3508 scaffold_2214 . repeat_region 876 2245 . ? . description=dust scaffold_2214 ensembl protein_coding_gene 506 874 . - . ID=Phyra87588;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2214000001;logic_name=jgi_phyra1 scaffold_2214 ensembl transcript 506 874 . - . ID=Phyra87588;Parent=Phyra87588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2214 . CDS 506 874 . - 0 ID=Phyra87588;Parent=Phyra87588;rank=1 scaffold_2214 . exon 506 874 . - . ID=Phyra87588.1;Parent=Phyra87588;constitutive=1;rank=1 scaffold_2214 ensembl protein_coding_gene 2887 3462 . + . ID=Phyra87589;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2214000002;logic_name=jgi_phyra1 scaffold_2214 ensembl transcript 2887 3462 . + . ID=Phyra87589;Parent=Phyra87589;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2214 . CDS 2887 3204 . + 0 ID=Phyra87589;Parent=Phyra87589;rank=1 scaffold_2214 . exon 2887 3204 . + . ID=Phyra87589.1;Parent=Phyra87589;constitutive=1;rank=1 scaffold_2214 . CDS 3313 3462 . + 0 ID=Phyra87589;Parent=Phyra87589;rank=2 scaffold_2214 . exon 3313 3462 . + . ID=Phyra87589.2;Parent=Phyra87589;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2119 1 3509 scaffold_2119 . biological_region 948 954 0.999 - . logic_name=eponine scaffold_2119 . repeat_region 1031 2281 . ? . description=dust scaffold_2119 . repeat_region 2599 3341 . - . description=GypsyPi-1c_I-int scaffold_2119 ensembl protein_coding_gene 2781 3101 . - . ID=Phyra44577;biotype=protein_coding;external_name=gwEuk.2119.4.1;logic_name=jgi_phyra1 scaffold_2119 ensembl transcript 2781 3101 . - . ID=Phyra44577;Parent=Phyra44577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2119 . CDS 2781 3101 . - 0 ID=Phyra44577;Parent=Phyra44577;rank=1 scaffold_2119 . exon 2781 3101 . - . ID=Phyra44577.1;Parent=Phyra44577;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2117 1 3510 scaffold_2117 . repeat_region 1007 2100 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2259 1 3511 scaffold_2259 . repeat_region 898 2357 . ? . description=dust scaffold_2259 ensembl protein_coding_gene 47 711 . + . ID=Phyra87612;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2259000001;logic_name=jgi_phyra1 scaffold_2259 ensembl transcript 47 711 . + . ID=Phyra87612;Parent=Phyra87612;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2259 . exon 47 409 . + . ID=Phyra87612.1;Parent=Phyra87612;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2259 . CDS 48 409 . + 0 ID=Phyra87612;Parent=Phyra87612;rank=1 scaffold_2259 . CDS 524 644 . + 0 ID=Phyra87612;Parent=Phyra87612;rank=2 scaffold_2259 . exon 524 644 . + . ID=Phyra87612.2;Parent=Phyra87612;constitutive=1;ensembl_phase=2;rank=2 scaffold_2259 . CDS 706 711 . + 0 ID=Phyra87612;Parent=Phyra87612;rank=3 scaffold_2259 . exon 706 711 . + . ID=Phyra87612.3;Parent=Phyra87612;constitutive=1;rank=3 scaffold_2259 ensembl protein_coding_gene 2991 3503 . + . ID=Phyra87613;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2259000002;logic_name=jgi_phyra1 scaffold_2259 ensembl transcript 2991 3503 . + . ID=Phyra87613;Parent=Phyra87613;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2259 . CDS 2991 3154 . + 0 ID=Phyra87613;Parent=Phyra87613;rank=1 scaffold_2259 . exon 2991 3154 . + . ID=Phyra87613.1;Parent=Phyra87613;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2259 . CDS 3219 3503 . + 0 ID=Phyra87613;Parent=Phyra87613;rank=2 scaffold_2259 . exon 3219 3503 . + . ID=Phyra87613.2;Parent=Phyra87613;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_2325 1 3511 scaffold_2325 . repeat_region 266 320 . + . description=(TCCG)n scaffold_2325 . repeat_region 267 310 . ? . description=dust scaffold_2325 . repeat_region 268 310 . ? . description=trf scaffold_2325 . biological_region 333 337 0.999 - . logic_name=eponine scaffold_2325 . repeat_region 1050 2246 . ? . description=dust scaffold_2325 . repeat_region 2309 2871 . ? . description=trf scaffold_2325 . repeat_region 2309 2880 . ? . description=trf scaffold_2325 . biological_region 2956 2956 0.999 - . logic_name=eponine scaffold_2325 ensembl tRNA_gene 86 158 . + . ID=EPrPRAG00000000024;biotype=tRNA;description=tRNA-Ala for anticodon CGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_2325 ensembl transcript 86 158 . + . ID=EPrPRAT00000000024;Parent=EPrPRAG00000000024;biotype=tRNA;logic_name=ncrna_eg scaffold_2325 ensembl tRNA_gene 160 231 . + . ID=EPrPRAG00000000164;biotype=tRNA;description=tRNA-His for anticodon GUG [Source:TRNASCAN_SE%3BAcc:tRNA-His];external_name=tRNA-His;logic_name=ncrna_eg scaffold_2325 ensembl transcript 160 231 . + . ID=EPrPRAT00000000164;Parent=EPrPRAG00000000164;biotype=tRNA;logic_name=ncrna_eg scaffold_2325 . exon 86 158 . + . ID=EPrPRAE00000000024;Parent=EPrPRAT00000000024;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2325 . exon 160 231 . + . ID=EPrPRAE00000000164;Parent=EPrPRAT00000000164;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2162 1 3512 scaffold_2162 . repeat_region 1321 2633 . ? . description=dust scaffold_2162 . biological_region 2800 2803 0.999 + . logic_name=eponine scaffold_2162 ensembl protein_coding_gene 2714 3505 . + . ID=Phyra87556;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2162000001;logic_name=jgi_phyra1 scaffold_2162 ensembl transcript 2714 3505 . + . ID=Phyra87556;Parent=Phyra87556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2162 . CDS 2714 3505 . + 0 ID=Phyra87556;Parent=Phyra87556;rank=1 scaffold_2162 . exon 2714 3505 . + . ID=Phyra87556.1;Parent=Phyra87556;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2306 1 3512 scaffold_2306 . repeat_region 1009 2471 . ? . description=dust scaffold_2306 . biological_region 3466 3467 0.999 - . logic_name=eponine scaffold_2306 ensembl protein_coding_gene 31 3446 . + . ID=Phyra87644;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2306000001;logic_name=jgi_phyra1 scaffold_2306 ensembl transcript 31 3446 . + . ID=Phyra87644;Parent=Phyra87644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2306 . CDS 31 928 . + 0 ID=Phyra87644;Parent=Phyra87644;rank=1 scaffold_2306 . exon 31 928 . + . ID=Phyra87644.1;Parent=Phyra87644;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2306 . CDS 2500 3446 . + 0 ID=Phyra87644;Parent=Phyra87644;rank=2 scaffold_2306 . exon 2500 3446 . + . ID=Phyra87644.2;Parent=Phyra87644;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2112 1 3513 scaffold_2112 . repeat_region 936 1883 . ? . description=dust scaffold_2112 . repeat_region 2779 2791 . ? . description=dust scaffold_2112 . repeat_region 2902 2977 . ? . description=dust scaffold_2112 . repeat_region 2905 2978 . ? . description=trf scaffold_2112 . repeat_region 2905 2978 . + . description=(TCTG)n scaffold_2112 . biological_region 3052 3056 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2115 1 3513 scaffold_2115 . repeat_region 918 2029 . ? . description=dust scaffold_2115 . repeat_region 2792 2799 . ? . description=dust scaffold_2115 ensembl protein_coding_gene 101 839 . + . ID=Phyra87526;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2115000001;logic_name=jgi_phyra1 scaffold_2115 ensembl transcript 101 839 . + . ID=Phyra87526;Parent=Phyra87526;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2115 . CDS 101 762 . + 0 ID=Phyra87526;Parent=Phyra87526;rank=1 scaffold_2115 . exon 101 762 . + . ID=Phyra87526.1;Parent=Phyra87526;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2115 . CDS 803 839 . + 0 ID=Phyra87526;Parent=Phyra87526;rank=2 scaffold_2115 . exon 803 839 . + . ID=Phyra87526.2;Parent=Phyra87526;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_2116 1 3513 scaffold_2116 . biological_region 880 880 0.999 + . logic_name=eponine scaffold_2116 . repeat_region 1321 2560 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2443 1 3515 scaffold_2443 . repeat_region 300 341 . ? . description=trf scaffold_2443 . repeat_region 491 512 . ? . description=trf scaffold_2443 . repeat_region 1112 2626 . ? . description=dust scaffold_2443 . repeat_region 2654 2700 . ? . description=trf scaffold_2443 . biological_region 2913 2917 0.999 - . logic_name=eponine scaffold_2443 . repeat_region 3334 3376 . ? . description=trf scaffold_2443 ensembl protein_coding_gene 761 1111 . + . ID=Phyra45472;biotype=protein_coding;external_name=gwEuk.2443.2.1;logic_name=jgi_phyra1 scaffold_2443 ensembl transcript 761 1111 . + . ID=Phyra45472;Parent=Phyra45472;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2443 . CDS 761 1111 . + 0 ID=Phyra45472;Parent=Phyra45472;rank=1 scaffold_2443 . exon 761 1111 . + . ID=Phyra45472.1;Parent=Phyra45472;constitutive=1;rank=1 scaffold_2443 ensembl protein_coding_gene 2729 3241 . - . ID=Phyra87707;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2443000001;logic_name=jgi_phyra1 scaffold_2443 ensembl transcript 2729 3241 . - . ID=Phyra87707;Parent=Phyra87707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2443 . CDS 2729 3241 . - 0 ID=Phyra87707;Parent=Phyra87707;rank=1 scaffold_2443 . exon 2729 3241 . - . ID=Phyra87707.1;Parent=Phyra87707;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2113 1 3516 scaffold_2113 . repeat_region 744 786 . ? . description=trf scaffold_2113 . repeat_region 858 2310 . ? . description=dust scaffold_2113 . biological_region 2575 2579 0.999 + . logic_name=eponine scaffold_2113 . repeat_region 2764 2804 . ? . description=trf scaffold_2113 ensembl protein_coding_gene 3314 3511 . - . ID=Phyra44570;biotype=protein_coding;external_name=gwEuk.2113.1.1;logic_name=jgi_phyra1 scaffold_2113 ensembl transcript 3314 3511 . - . ID=Phyra44570;Parent=Phyra44570;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2113 . CDS 3314 3511 . - 0 ID=Phyra44570;Parent=Phyra44570;rank=1 scaffold_2113 . exon 3314 3511 . - . ID=Phyra44570.1;Parent=Phyra44570;constitutive=1;rank=1 scaffold_2113 ensembl protein_coding_gene 29 479 . - . ID=Phyra87524;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2113000001;logic_name=jgi_phyra1 scaffold_2113 ensembl transcript 29 479 . - . ID=Phyra87524;Parent=Phyra87524;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2113 . CDS 29 479 . - 0 ID=Phyra87524;Parent=Phyra87524;rank=1 scaffold_2113 . exon 29 479 . - . ID=Phyra87524.1;Parent=Phyra87524;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2113 ensembl protein_coding_gene 2511 2903 . + . ID=Phyra87525;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2113000002;logic_name=jgi_phyra1 scaffold_2113 ensembl transcript 2511 2903 . + . ID=Phyra87525;Parent=Phyra87525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2113 . CDS 2511 2903 . + 0 ID=Phyra87525;Parent=Phyra87525;rank=1 scaffold_2113 . exon 2511 2903 . + . ID=Phyra87525.1;Parent=Phyra87525;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2107 1 3517 scaffold_2107 . repeat_region 651 697 . ? . description=trf scaffold_2107 . repeat_region 1081 2333 . ? . description=dust scaffold_2107 . repeat_region 2482 2524 . ? . description=trf scaffold_2107 . biological_region 2773 2775 0.999 - . logic_name=eponine scaffold_2107 . biological_region 3125 3129 0.999 - . logic_name=eponine scaffold_2107 ensembl protein_coding_gene 1 459 . + . ID=Phyra87519;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2107000001;logic_name=jgi_phyra1 scaffold_2107 ensembl transcript 1 459 . + . ID=Phyra87519;Parent=Phyra87519;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2107 . CDS 1 459 . + 0 ID=Phyra87519;Parent=Phyra87519;rank=1 scaffold_2107 . exon 1 459 . + . ID=Phyra87519.1;Parent=Phyra87519;constitutive=1;rank=1 scaffold_2107 ensembl protein_coding_gene 2575 3477 . - . ID=Phyra87520;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2107000002;logic_name=jgi_phyra1 scaffold_2107 ensembl transcript 2575 3477 . - . ID=Phyra87520;Parent=Phyra87520;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2107 . CDS 2575 3477 . - 0 ID=Phyra87520;Parent=Phyra87520;rank=1 scaffold_2107 . exon 2575 3477 . - . ID=Phyra87520.1;Parent=Phyra87520;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2104 1 3518 scaffold_2104 . biological_region 971 974 0.999 + . logic_name=eponine scaffold_2104 . repeat_region 1136 2554 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2105 1 3518 scaffold_2105 . repeat_region 1063 2359 . ? . description=dust scaffold_2105 . repeat_region 2615 2671 . ? . description=trf scaffold_2105 . repeat_region 2628 2671 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2101 1 3519 scaffold_2101 . repeat_region 1613 2387 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2103 1 3519 scaffold_2103 . biological_region 174 176 0.999 + . logic_name=eponine scaffold_2103 . repeat_region 288 318 . ? . description=trf scaffold_2103 . repeat_region 1129 2400 . ? . description=dust scaffold_2103 . repeat_region 2675 3516 . + . description=GypsyPi-1c_I-int scaffold_2103 ensembl protein_coding_gene 1 918 . - . ID=Phyra87517;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2103000001;logic_name=jgi_phyra1 scaffold_2103 ensembl transcript 1 918 . - . ID=Phyra87517;Parent=Phyra87517;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2103 . CDS 1 836 . - 0 ID=Phyra87517;Parent=Phyra87517;rank=2 scaffold_2103 . exon 1 836 . - . ID=Phyra87517.2;Parent=Phyra87517;constitutive=1;ensembl_phase=1;rank=2 scaffold_2103 . CDS 888 918 . - 0 ID=Phyra87517;Parent=Phyra87517;rank=1 scaffold_2103 . exon 888 918 . - . ID=Phyra87517.1;Parent=Phyra87517;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2103 ensembl protein_coding_gene 2483 3258 . + . ID=Phyra87518;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2103000002;logic_name=jgi_phyra1 scaffold_2103 ensembl transcript 2483 3258 . + . ID=Phyra87518;Parent=Phyra87518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2103 . CDS 2483 3123 . + 0 ID=Phyra87518;Parent=Phyra87518;rank=1 scaffold_2103 . exon 2483 3123 . + . ID=Phyra87518.1;Parent=Phyra87518;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2103 . CDS 3237 3258 . + 0 ID=Phyra87518;Parent=Phyra87518;rank=2 scaffold_2103 . exon 3237 3258 . + . ID=Phyra87518.2;Parent=Phyra87518;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_2183 1 3519 scaffold_2183 . repeat_region 762 804 . ? . description=trf scaffold_2183 . repeat_region 1172 2465 . ? . description=dust scaffold_2183 ensembl protein_coding_gene 34 3449 . - . ID=Phyra87570;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2183000001;logic_name=jgi_phyra1 scaffold_2183 ensembl transcript 34 3449 . - . ID=Phyra87570;Parent=Phyra87570;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2183 . CDS 34 487 . - 0 ID=Phyra87570;Parent=Phyra87570;rank=3 scaffold_2183 . exon 34 487 . - . ID=Phyra87570.3;Parent=Phyra87570;constitutive=1;ensembl_phase=2;rank=3 scaffold_2183 . CDS 859 1148 . - 0 ID=Phyra87570;Parent=Phyra87570;rank=2 scaffold_2183 . exon 859 1148 . - . ID=Phyra87570.2;Parent=Phyra87570;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2183 . CDS 2472 3449 . - 0 ID=Phyra87570;Parent=Phyra87570;rank=1 scaffold_2183 . exon 2472 3449 . - . ID=Phyra87570.1;Parent=Phyra87570;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2111 1 3521 scaffold_2111 . biological_region 981 981 0.999 - . logic_name=eponine scaffold_2111 . biological_region 1113 1119 0.999 - . logic_name=eponine scaffold_2111 . repeat_region 1442 2499 . ? . description=dust scaffold_2111 . repeat_region 2992 3202 . ? . description=trf scaffold_2111 ensembl protein_coding_gene 417 887 . + . ID=Phyra87522;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2111000001;logic_name=jgi_phyra1 scaffold_2111 ensembl transcript 417 887 . + . ID=Phyra87522;Parent=Phyra87522;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2111 . CDS 417 887 . + 0 ID=Phyra87522;Parent=Phyra87522;rank=1 scaffold_2111 . exon 417 887 . + . ID=Phyra87522.1;Parent=Phyra87522;constitutive=1;rank=1 scaffold_2111 ensembl protein_coding_gene 2747 3277 . + . ID=Phyra87523;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2111000002;logic_name=jgi_phyra1 scaffold_2111 ensembl transcript 2747 3277 . + . ID=Phyra87523;Parent=Phyra87523;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2111 . CDS 2747 3277 . + 0 ID=Phyra87523;Parent=Phyra87523;rank=1 scaffold_2111 . exon 2747 3277 . + . ID=Phyra87523.1;Parent=Phyra87523;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2186 1 3521 scaffold_2186 . biological_region 780 785 0.999 - . logic_name=eponine scaffold_2186 . biological_region 836 839 0.999 + . logic_name=eponine scaffold_2186 . repeat_region 888 1976 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2099 1 3522 scaffold_2099 . repeat_region 1 184 . + . description=GypsyPi-1c_I-int scaffold_2099 . repeat_region 994 2239 . ? . description=dust scaffold_2099 . repeat_region 2763 3522 . - . description=GypsyPi-1c_I-int scaffold_2099 ensembl protein_coding_gene 3293 3517 . - . ID=Phyra44334;biotype=protein_coding;external_name=gwEuk.2099.2.1;logic_name=jgi_phyra1 scaffold_2099 ensembl transcript 3293 3517 . - . ID=Phyra44334;Parent=Phyra44334;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2099 . CDS 3293 3517 . - 0 ID=Phyra44334;Parent=Phyra44334;rank=1 scaffold_2099 . exon 3293 3517 . - . ID=Phyra44334.1;Parent=Phyra44334;constitutive=1;rank=1 scaffold_2099 ensembl protein_coding_gene 2678 3067 . - . ID=Phyra87514;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2099000001;logic_name=jgi_phyra1 scaffold_2099 ensembl transcript 2678 3067 . - . ID=Phyra87514;Parent=Phyra87514;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2099 . CDS 2678 2946 . - 0 ID=Phyra87514;Parent=Phyra87514;rank=2 scaffold_2099 . exon 2678 2946 . - . ID=Phyra87514.2;Parent=Phyra87514;constitutive=1;ensembl_phase=1;rank=2 scaffold_2099 . CDS 3016 3067 . - 0 ID=Phyra87514;Parent=Phyra87514;rank=1 scaffold_2099 . exon 3016 3067 . - . ID=Phyra87514.1;Parent=Phyra87514;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2102 1 3523 scaffold_2102 . repeat_region 84 127 . ? . description=trf scaffold_2102 . repeat_region 1312 2287 . ? . description=dust scaffold_2102 ensembl protein_coding_gene 2992 3390 . + . ID=Phyra72528;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2102000001;logic_name=jgi_phyra1 scaffold_2102 ensembl transcript 2992 3390 . + . ID=Phyra72528;Parent=Phyra72528;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2102 . CDS 2992 3390 . + 0 ID=Phyra72528;Parent=Phyra72528;rank=1 scaffold_2102 . exon 2992 3390 . + . ID=Phyra72528.1;Parent=Phyra72528;constitutive=1;rank=1 scaffold_2102 ensembl protein_coding_gene 18 563 . + . ID=Phyra87515;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2102000001;logic_name=jgi_phyra1 scaffold_2102 ensembl transcript 18 563 . + . ID=Phyra87515;Parent=Phyra87515;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2102 . CDS 18 563 . + 0 ID=Phyra87515;Parent=Phyra87515;rank=1 scaffold_2102 . exon 18 563 . + . ID=Phyra87515.1;Parent=Phyra87515;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2097 1 3528 scaffold_2097 . repeat_region 1197 2113 . ? . description=dust scaffold_2097 . biological_region 2445 2448 0.999 - . logic_name=eponine scaffold_2097 . biological_region 3197 3201 0.999 + . logic_name=eponine scaffold_2097 . repeat_region 3408 3490 . ? . description=trf scaffold_2097 . repeat_region 3409 3485 . ? . description=trf scaffold_2097 ensembl protein_coding_gene 2133 2845 . + . ID=Phyra44325;biotype=protein_coding;external_name=gwEuk.2097.1.1;logic_name=jgi_phyra1 scaffold_2097 ensembl transcript 2133 2845 . + . ID=Phyra44325;Parent=Phyra44325;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2097 . CDS 2133 2264 . + 0 ID=Phyra44325;Parent=Phyra44325;rank=1 scaffold_2097 . exon 2133 2264 . + . ID=Phyra44325.1;Parent=Phyra44325;constitutive=1;rank=1 scaffold_2097 . CDS 2287 2535 . + 0 ID=Phyra44325;Parent=Phyra44325;rank=2 scaffold_2097 . exon 2287 2535 . + . ID=Phyra44325.2;Parent=Phyra44325;constitutive=1;rank=2 scaffold_2097 . CDS 2603 2845 . + 0 ID=Phyra44325;Parent=Phyra44325;rank=3 scaffold_2097 . exon 2603 2845 . + . ID=Phyra44325.3;Parent=Phyra44325;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_2095 1 3531 scaffold_2095 . repeat_region 1162 1952 . ? . description=dust scaffold_2095 . repeat_region 2263 2304 . ? . description=trf scaffold_2095 ensembl protein_coding_gene 30 3508 . - . ID=Phyra87511;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2095000001;logic_name=jgi_phyra1 scaffold_2095 ensembl transcript 30 3508 . - . ID=Phyra87511;Parent=Phyra87511;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2095 . CDS 30 1120 . - 0 ID=Phyra87511;Parent=Phyra87511;rank=2 scaffold_2095 . exon 30 1120 . - . ID=Phyra87511.2;Parent=Phyra87511;constitutive=1;ensembl_phase=1;rank=2 scaffold_2095 . CDS 2383 3508 . - 0 ID=Phyra87511;Parent=Phyra87511;rank=1 scaffold_2095 . exon 2383 3508 . - . ID=Phyra87511.1;Parent=Phyra87511;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2079 1 3533 scaffold_2079 . repeat_region 20 41 . ? . description=trf scaffold_2079 . repeat_region 1095 2297 . ? . description=dust scaffold_2079 . repeat_region 2336 2378 . ? . description=trf scaffold_2079 . repeat_region 2844 2886 . ? . description=trf scaffold_2079 . repeat_region 3352 3394 . ? . description=trf scaffold_2079 ensembl protein_coding_gene 102 1073 . - . ID=Phyra87501;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2079000001;logic_name=jgi_phyra1 scaffold_2079 ensembl transcript 102 1073 . - . ID=Phyra87501;Parent=Phyra87501;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2079 . CDS 102 1073 . - 0 ID=Phyra87501;Parent=Phyra87501;rank=1 scaffold_2079 . exon 102 1073 . - . ID=Phyra87501.1;Parent=Phyra87501;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2093 1 3534 scaffold_2093 . biological_region 828 832 0.999 - . logic_name=eponine scaffold_2093 . biological_region 1015 1016 0.999 - . logic_name=eponine scaffold_2093 . repeat_region 1055 2028 . ? . description=dust scaffold_2093 . repeat_region 2029 2230 . - . description=GypsyPi-1c_I-int scaffold_2093 . repeat_region 2540 3284 . - . description=GypsyPi-1c_I-int scaffold_2093 ensembl protein_coding_gene 2718 3044 . - . ID=Phyra44322;biotype=protein_coding;external_name=gwEuk.2093.3.1;logic_name=jgi_phyra1 scaffold_2093 ensembl transcript 2718 3044 . - . ID=Phyra44322;Parent=Phyra44322;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2093 . CDS 2718 3044 . - 0 ID=Phyra44322;Parent=Phyra44322;rank=1 scaffold_2093 . exon 2718 3044 . - . ID=Phyra44322.1;Parent=Phyra44322;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2094 1 3535 scaffold_2094 . repeat_region 1764 2505 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2092 1 3537 scaffold_2092 . repeat_region 1427 2190 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2091 1 3538 scaffold_2091 . repeat_region 1148 2448 . ? . description=dust scaffold_2091 ensembl protein_coding_gene 45 819 . + . ID=Phyra87509;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2091000001;logic_name=jgi_phyra1 scaffold_2091 ensembl transcript 45 819 . + . ID=Phyra87509;Parent=Phyra87509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2091 . CDS 45 336 . + 0 ID=Phyra87509;Parent=Phyra87509;rank=1 scaffold_2091 . exon 45 336 . + . ID=Phyra87509.1;Parent=Phyra87509;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2091 . CDS 413 819 . + 0 ID=Phyra87509;Parent=Phyra87509;rank=2 scaffold_2091 . exon 413 819 . + . ID=Phyra87509.2;Parent=Phyra87509;constitutive=1;ensembl_phase=1;rank=2 scaffold_2091 ensembl protein_coding_gene 2586 3451 . - . ID=Phyra87510;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2091000002;logic_name=jgi_phyra1 scaffold_2091 ensembl transcript 2586 3451 . - . ID=Phyra87510;Parent=Phyra87510;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2091 . CDS 2586 2641 . - 0 ID=Phyra87510;Parent=Phyra87510;rank=2 scaffold_2091 . exon 2586 2641 . - . ID=Phyra87510.2;Parent=Phyra87510;constitutive=1;ensembl_phase=1;rank=2 scaffold_2091 . CDS 2773 3451 . - 0 ID=Phyra87510;Parent=Phyra87510;rank=1 scaffold_2091 . exon 2773 3451 . - . ID=Phyra87510.1;Parent=Phyra87510;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2090 1 3539 scaffold_2090 . repeat_region 965 1002 . ? . description=trf scaffold_2090 . repeat_region 965 1002 . ? . description=dust scaffold_2090 . repeat_region 1060 2386 . ? . description=dust scaffold_2090 . repeat_region 2806 2821 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2087 1 3541 scaffold_2087 . repeat_region 1801 1850 . ? . description=trf scaffold_2087 ensembl protein_coding_gene 2167 2574 . + . ID=Phyra44314;biotype=protein_coding;external_name=gwEuk.2087.1.1;logic_name=jgi_phyra1 scaffold_2087 ensembl transcript 2167 2574 . + . ID=Phyra44314;Parent=Phyra44314;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2087 . CDS 2167 2574 . + 0 ID=Phyra44314;Parent=Phyra44314;rank=1 scaffold_2087 . exon 2167 2574 . + . ID=Phyra44314.1;Parent=Phyra44314;constitutive=1;rank=1 scaffold_2087 ensembl protein_coding_gene 49 836 . + . ID=Phyra87507;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2087000001;logic_name=jgi_phyra1 scaffold_2087 ensembl transcript 49 836 . + . ID=Phyra87507;Parent=Phyra87507;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2087 . CDS 49 760 . + 0 ID=Phyra87507;Parent=Phyra87507;rank=1 scaffold_2087 . exon 49 760 . + . ID=Phyra87507.1;Parent=Phyra87507;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2087 . CDS 826 836 . + 0 ID=Phyra87507;Parent=Phyra87507;rank=2 scaffold_2087 . exon 826 836 . + . ID=Phyra87507.2;Parent=Phyra87507;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2089 1 3541 scaffold_2089 . biological_region 484 485 0.999 - . logic_name=eponine scaffold_2089 . biological_region 559 563 0.999 + . logic_name=eponine scaffold_2089 . repeat_region 774 1998 . ? . description=dust scaffold_2089 . biological_region 3426 3428 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2200 1 3541 scaffold_2200 . biological_region 12 16 0.999 + . logic_name=eponine scaffold_2200 . repeat_region 1005 2364 . ? . description=dust scaffold_2200 ensembl protein_coding_gene 32 3515 . + . ID=Phyra87580;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2200000001;logic_name=jgi_phyra1 scaffold_2200 ensembl transcript 32 3515 . + . ID=Phyra87580;Parent=Phyra87580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2200 . CDS 32 103 . + 0 ID=Phyra87580;Parent=Phyra87580;rank=1 scaffold_2200 . exon 32 103 . + . ID=Phyra87580.1;Parent=Phyra87580;constitutive=1;rank=1 scaffold_2200 . CDS 194 818 . + 0 ID=Phyra87580;Parent=Phyra87580;rank=2 scaffold_2200 . exon 194 818 . + . ID=Phyra87580.2;Parent=Phyra87580;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2200 . CDS 2407 3515 . + 0 ID=Phyra87580;Parent=Phyra87580;rank=3 scaffold_2200 . exon 2407 3515 . + . ID=Phyra87580.3;Parent=Phyra87580;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_2114 1 3543 scaffold_2114 . biological_region 169 169 0.999 + . logic_name=eponine scaffold_2114 . biological_region 538 542 0.999 + . logic_name=eponine scaffold_2114 . repeat_region 1796 2655 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2118 1 3543 scaffold_2118 . repeat_region 838 2031 . ? . description=dust scaffold_2118 . biological_region 3326 3330 0.999 - . logic_name=eponine scaffold_2118 . biological_region 3377 3377 0.999 - . logic_name=eponine scaffold_2118 ensembl protein_coding_gene 33 605 . - . ID=Phyra44572;biotype=protein_coding;external_name=gwEuk.2118.2.1;logic_name=jgi_phyra1 scaffold_2118 ensembl transcript 33 605 . - . ID=Phyra44572;Parent=Phyra44572;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2118 . CDS 33 605 . - 0 ID=Phyra44572;Parent=Phyra44572;rank=1 scaffold_2118 . exon 33 605 . - . ID=Phyra44572.1;Parent=Phyra44572;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2084 1 3544 scaffold_2084 . repeat_region 1334 2032 . ? . description=dust scaffold_2084 . biological_region 2280 2284 0.999 - . logic_name=eponine scaffold_2084 . biological_region 2526 2527 0.999 + . logic_name=eponine scaffold_2084 ensembl protein_coding_gene 2366 3286 . + . ID=Phyra87505;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2084000001;logic_name=jgi_phyra1 scaffold_2084 ensembl transcript 2366 3286 . + . ID=Phyra87505;Parent=Phyra87505;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2084 . CDS 2366 3286 . + 0 ID=Phyra87505;Parent=Phyra87505;rank=1 scaffold_2084 . exon 2366 3286 . + . ID=Phyra87505.1;Parent=Phyra87505;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2082 1 3545 scaffold_2082 . repeat_region 1279 1742 . ? . description=dust scaffold_2082 . biological_region 1945 1950 0.999 - . logic_name=eponine scaffold_2082 . biological_region 2794 2796 0.999 - . logic_name=eponine scaffold_2082 . biological_region 2819 2823 0.999 - . logic_name=eponine scaffold_2082 . biological_region 2855 2857 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2085 1 3545 scaffold_2085 . repeat_region 1271 2666 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2080 1 3546 scaffold_2080 . repeat_region 52 1470 . + . description=Polinton-1_PI scaffold_2080 . repeat_region 1474 2595 . ? . description=dust scaffold_2080 . repeat_region 2596 2793 . + . description=Polinton-1_PI scaffold_2080 . repeat_region 3262 3344 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_2130 1 3547 scaffold_2130 . repeat_region 1258 1868 . ? . description=dust scaffold_2130 ensembl protein_coding_gene 2347 2613 . + . ID=Phyra44609;biotype=protein_coding;external_name=gwEuk.2130.3.1;logic_name=jgi_phyra1 scaffold_2130 ensembl transcript 2347 2613 . + . ID=Phyra44609;Parent=Phyra44609;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2130 . CDS 2347 2613 . + 0 ID=Phyra44609;Parent=Phyra44609;rank=1 scaffold_2130 . exon 2347 2613 . + . ID=Phyra44609.1;Parent=Phyra44609;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2145 1 3547 scaffold_2145 . repeat_region 1118 2071 . ? . description=dust scaffold_2145 . repeat_region 2972 3014 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1982 1 3549 scaffold_1982 . repeat_region 1648 2045 . ? . description=dust scaffold_1982 ensembl protein_coding_gene 45 668 . + . ID=Phyra87435;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1982000001;logic_name=jgi_phyra1 scaffold_1982 ensembl transcript 45 668 . + . ID=Phyra87435;Parent=Phyra87435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1982 . CDS 45 668 . + 0 ID=Phyra87435;Parent=Phyra87435;rank=1 scaffold_1982 . exon 45 668 . + . ID=Phyra87435.1;Parent=Phyra87435;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2077 1 3550 scaffold_2077 . biological_region 1119 1123 0.999 + . logic_name=eponine scaffold_2077 . repeat_region 1127 1168 . ? . description=trf scaffold_2077 . repeat_region 1562 2326 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2078 1 3550 scaffold_2078 . biological_region 738 742 0.999 - . logic_name=eponine scaffold_2078 . repeat_region 1281 2629 . ? . description=dust scaffold_2078 ensembl protein_coding_gene 20 1219 . - . ID=Phyra87500;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2078000001;logic_name=jgi_phyra1 scaffold_2078 ensembl transcript 20 1219 . - . ID=Phyra87500;Parent=Phyra87500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2078 . CDS 20 1219 . - 0 ID=Phyra87500;Parent=Phyra87500;rank=1 scaffold_2078 . exon 20 1219 . - . ID=Phyra87500.1;Parent=Phyra87500;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2076 1 3551 scaffold_2076 . biological_region 171 172 0.999 - . logic_name=eponine scaffold_2076 . repeat_region 1061 1086 . ? . description=dust scaffold_2076 . repeat_region 1185 2232 . ? . description=dust scaffold_2076 ensembl protein_coding_gene 401 1144 . - . ID=Phyra87499;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2076000001;logic_name=jgi_phyra1 scaffold_2076 ensembl transcript 401 1144 . - . ID=Phyra87499;Parent=Phyra87499;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2076 . CDS 401 1144 . - 0 ID=Phyra87499;Parent=Phyra87499;rank=1 scaffold_2076 . exon 401 1144 . - . ID=Phyra87499.1;Parent=Phyra87499;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2072 1 3552 scaffold_2072 . repeat_region 193 256 . ? . description=dust scaffold_2072 . repeat_region 842 2321 . ? . description=dust scaffold_2072 . repeat_region 3398 3441 . ? . description=trf scaffold_2072 ensembl protein_coding_gene 361 726 . - . ID=Phyra44304;biotype=protein_coding;external_name=gwEuk.2072.5.1;logic_name=jgi_phyra1 scaffold_2072 ensembl transcript 361 726 . - . ID=Phyra44304;Parent=Phyra44304;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2072 . CDS 361 726 . - 0 ID=Phyra44304;Parent=Phyra44304;rank=1 scaffold_2072 . exon 361 726 . - . ID=Phyra44304.1;Parent=Phyra44304;constitutive=1;rank=1 scaffold_2072 ensembl protein_coding_gene 744 3507 . - . ID=Phyra87496;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2072000002;logic_name=jgi_phyra1 scaffold_2072 ensembl transcript 744 3507 . - . ID=Phyra87496;Parent=Phyra87496;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2072 . CDS 744 813 . - 0 ID=Phyra87496;Parent=Phyra87496;rank=2 scaffold_2072 . exon 744 813 . - . ID=Phyra87496.2;Parent=Phyra87496;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2072 . CDS 2347 3507 . - 0 ID=Phyra87496;Parent=Phyra87496;rank=1 scaffold_2072 . exon 2347 3507 . - . ID=Phyra87496.1;Parent=Phyra87496;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2074 1 3552 scaffold_2074 . repeat_region 930 2125 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2075 1 3552 scaffold_2075 . repeat_region 232 239 . ? . description=dust scaffold_2075 . repeat_region 1166 2139 . ? . description=dust scaffold_2075 ensembl protein_coding_gene 3080 3547 . - . ID=Phyra87498;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2075000001;logic_name=jgi_phyra1 scaffold_2075 ensembl transcript 3080 3547 . - . ID=Phyra87498;Parent=Phyra87498;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2075 . CDS 3080 3547 . - 0 ID=Phyra87498;Parent=Phyra87498;rank=1 scaffold_2075 . exon 3080 3547 . - . ID=Phyra87498.1;Parent=Phyra87498;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2071 1 3554 scaffold_2071 . repeat_region 1934 1941 . ? . description=dust scaffold_2071 . repeat_region 2175 2183 . ? . description=dust scaffold_2071 ensembl protein_coding_gene 550 1875 . + . ID=Phyra87493;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2071000001;logic_name=jgi_phyra1 scaffold_2071 ensembl transcript 550 1875 . + . ID=Phyra87493;Parent=Phyra87493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2071 . CDS 550 618 . + 0 ID=Phyra87493;Parent=Phyra87493;rank=1 scaffold_2071 . exon 550 618 . + . ID=Phyra87493.1;Parent=Phyra87493;constitutive=1;rank=1 scaffold_2071 . CDS 683 1018 . + 0 ID=Phyra87493;Parent=Phyra87493;rank=2 scaffold_2071 . exon 683 1018 . + . ID=Phyra87493.2;Parent=Phyra87493;constitutive=1;rank=2 scaffold_2071 . CDS 1091 1596 . + 0 ID=Phyra87493;Parent=Phyra87493;rank=3 scaffold_2071 . exon 1091 1596 . + . ID=Phyra87493.3;Parent=Phyra87493;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2071 . CDS 1659 1875 . + 0 ID=Phyra87493;Parent=Phyra87493;rank=4 scaffold_2071 . exon 1659 1875 . + . ID=Phyra87493.4;Parent=Phyra87493;constitutive=1;ensembl_phase=2;rank=4 scaffold_2071 ensembl protein_coding_gene 2028 3450 . + . ID=Phyra87494;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2071000002;logic_name=jgi_phyra1 scaffold_2071 ensembl transcript 2028 3450 . + . ID=Phyra87494;Parent=Phyra87494;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2071 . CDS 2028 2165 . + 0 ID=Phyra87494;Parent=Phyra87494;rank=1 scaffold_2071 . exon 2028 2165 . + . ID=Phyra87494.1;Parent=Phyra87494;constitutive=1;rank=1 scaffold_2071 . CDS 2242 2577 . + 0 ID=Phyra87494;Parent=Phyra87494;rank=2 scaffold_2071 . exon 2242 2577 . + . ID=Phyra87494.2;Parent=Phyra87494;constitutive=1;rank=2 scaffold_2071 . CDS 2651 3156 . + 0 ID=Phyra87494;Parent=Phyra87494;rank=3 scaffold_2071 . exon 2651 3156 . + . ID=Phyra87494.3;Parent=Phyra87494;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2071 . CDS 3234 3450 . + 0 ID=Phyra87494;Parent=Phyra87494;rank=4 scaffold_2071 . exon 3234 3450 . + . ID=Phyra87494.4;Parent=Phyra87494;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_2067 1 3555 scaffold_2067 . repeat_region 1424 2913 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2070 1 3555 scaffold_2070 . repeat_region 468 746 . + . description=GypsyPi-1c_I-int scaffold_2070 . repeat_region 859 2386 . ? . description=dust scaffold_2070 . biological_region 3393 3397 0.999 - . logic_name=eponine scaffold_2070 ensembl protein_coding_gene 3232 3555 . - . ID=Phyra87492;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2070000001;logic_name=jgi_phyra1 scaffold_2070 ensembl transcript 3232 3555 . - . ID=Phyra87492;Parent=Phyra87492;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2070 . CDS 3232 3555 . - 0 ID=Phyra87492;Parent=Phyra87492;rank=1 scaffold_2070 . exon 3232 3555 . - . ID=Phyra87492.1;Parent=Phyra87492;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2064 1 3556 scaffold_2064 . repeat_region 1093 2611 . ? . description=dust scaffold_2064 . repeat_region 2626 3168 . + . description=GypsyPi-1c_I-int scaffold_2064 . biological_region 3435 3438 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2069 1 3556 scaffold_2069 . repeat_region 1299 2711 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2065 1 3557 scaffold_2065 . biological_region 392 395 0.999 + . logic_name=eponine scaffold_2065 . biological_region 444 445 0.999 + . logic_name=eponine scaffold_2065 . biological_region 546 548 0.999 + . logic_name=eponine scaffold_2065 . repeat_region 1080 1249 . + . description=GypsyPi-1c_I-int scaffold_2065 . repeat_region 1270 2209 . ? . description=dust scaffold_2065 . repeat_region 2216 3387 . + . description=GypsyPi-1c_I-int scaffold_2065 ensembl protein_coding_gene 3010 3264 . + . ID=Phyra44292;biotype=protein_coding;external_name=gwEuk.2065.2.1;logic_name=jgi_phyra1 scaffold_2065 ensembl transcript 3010 3264 . + . ID=Phyra44292;Parent=Phyra44292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2065 . CDS 3010 3264 . + 0 ID=Phyra44292;Parent=Phyra44292;rank=1 scaffold_2065 . exon 3010 3264 . + . ID=Phyra44292.1;Parent=Phyra44292;constitutive=1;rank=1 scaffold_2065 ensembl protein_coding_gene 9 1251 . + . ID=Phyra87491;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2065000001;logic_name=jgi_phyra1 scaffold_2065 ensembl transcript 9 1251 . + . ID=Phyra87491;Parent=Phyra87491;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2065 . CDS 9 196 . + 0 ID=Phyra87491;Parent=Phyra87491;rank=1 scaffold_2065 . exon 9 196 . + . ID=Phyra87491.1;Parent=Phyra87491;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2065 . CDS 353 1149 . + 0 ID=Phyra87491;Parent=Phyra87491;rank=2 scaffold_2065 . exon 353 1149 . + . ID=Phyra87491.2;Parent=Phyra87491;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2065 . CDS 1232 1251 . + 0 ID=Phyra87491;Parent=Phyra87491;rank=3 scaffold_2065 . exon 1232 1251 . + . ID=Phyra87491.3;Parent=Phyra87491;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_2062 1 3558 scaffold_2062 . repeat_region 833 2253 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2363 1 3559 scaffold_2363 . repeat_region 683 1853 . ? . description=dust scaffold_2363 ensembl protein_coding_gene 170 3243 . + . ID=Phyra87671;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2363000001;logic_name=jgi_phyra1 scaffold_2363 ensembl transcript 170 3243 . + . ID=Phyra87671;Parent=Phyra87671;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2363 . CDS 170 562 . + 0 ID=Phyra87671;Parent=Phyra87671;rank=1 scaffold_2363 . exon 170 562 . + . ID=Phyra87671.1;Parent=Phyra87671;constitutive=1;rank=1 scaffold_2363 . CDS 1921 3243 . + 0 ID=Phyra87671;Parent=Phyra87671;rank=2 scaffold_2363 . exon 1921 3243 . + . ID=Phyra87671.2;Parent=Phyra87671;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2061 1 3560 scaffold_2061 . repeat_region 1167 2350 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2063 1 3560 scaffold_2063 . repeat_region 178 199 . ? . description=trf scaffold_2063 . biological_region 1397 1398 0.999 - . logic_name=eponine scaffold_2063 . repeat_region 1605 2234 . ? . description=dust scaffold_2063 . repeat_region 2315 2357 . ? . description=trf scaffold_2063 ensembl protein_coding_gene 9 3559 . - . ID=Phyra87490;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2063000001;logic_name=jgi_phyra1 scaffold_2063 ensembl transcript 9 3559 . - . ID=Phyra87490;Parent=Phyra87490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2063 . CDS 9 1553 . - 0 ID=Phyra87490;Parent=Phyra87490;rank=2 scaffold_2063 . exon 9 1553 . - . ID=Phyra87490.2;Parent=Phyra87490;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2063 . CDS 2412 3559 . - 0 ID=Phyra87490;Parent=Phyra87490;rank=1 scaffold_2063 . exon 2412 3559 . - . ID=Phyra87490.1;Parent=Phyra87490;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2057 1 3561 scaffold_2057 . biological_region 305 311 0.999 + . logic_name=eponine scaffold_2057 . repeat_region 373 452 . ? . description=trf scaffold_2057 . biological_region 801 806 0.999 - . logic_name=eponine scaffold_2057 . repeat_region 1339 2295 . ? . description=dust scaffold_2057 ensembl protein_coding_gene 50 1030 . + . ID=Phyra87486;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2057000001;logic_name=jgi_phyra1 scaffold_2057 ensembl transcript 50 1030 . + . ID=Phyra87486;Parent=Phyra87486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2057 . CDS 50 1030 . + 0 ID=Phyra87486;Parent=Phyra87486;rank=1 scaffold_2057 . exon 50 1030 . + . ID=Phyra87486.1;Parent=Phyra87486;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2059 1 3561 scaffold_2059 . repeat_region 251 269 . ? . description=dust scaffold_2059 . repeat_region 1216 1695 . ? . description=dust scaffold_2059 . repeat_region 2245 2253 . ? . description=dust scaffold_2059 . biological_region 2714 2719 0.999 - . logic_name=eponine scaffold_2059 ensembl protein_coding_gene 24 660 . + . ID=Phyra87488;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2059000001;logic_name=jgi_phyra1 scaffold_2059 ensembl transcript 24 660 . + . ID=Phyra87488;Parent=Phyra87488;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2059 . CDS 24 227 . + 0 ID=Phyra87488;Parent=Phyra87488;rank=1 scaffold_2059 . exon 24 227 . + . ID=Phyra87488.1;Parent=Phyra87488;constitutive=1;rank=1 scaffold_2059 . CDS 292 660 . + 0 ID=Phyra87488;Parent=Phyra87488;rank=2 scaffold_2059 . exon 292 660 . + . ID=Phyra87488.2;Parent=Phyra87488;constitutive=1;rank=2 scaffold_2059 ensembl protein_coding_gene 2937 3554 . + . ID=Phyra87489;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2059000002;logic_name=jgi_phyra1 scaffold_2059 ensembl transcript 2937 3554 . + . ID=Phyra87489;Parent=Phyra87489;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2059 . CDS 2937 3554 . + 0 ID=Phyra87489;Parent=Phyra87489;rank=1 scaffold_2059 . exon 2937 3554 . + . ID=Phyra87489.1;Parent=Phyra87489;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2167 1 3561 scaffold_2167 . biological_region 484 487 0.999 + . logic_name=eponine scaffold_2167 . repeat_region 498 529 . ? . description=trf scaffold_2167 . repeat_region 556 592 . ? . description=trf scaffold_2167 . repeat_region 921 963 . ? . description=trf scaffold_2167 . repeat_region 1288 2232 . ? . description=dust scaffold_2167 ensembl protein_coding_gene 1014 3522 . - . ID=Phyra87559;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2167000001;logic_name=jgi_phyra1 scaffold_2167 ensembl transcript 1014 3522 . - . ID=Phyra87559;Parent=Phyra87559;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2167 . CDS 1014 1259 . - 0 ID=Phyra87559;Parent=Phyra87559;rank=2 scaffold_2167 . exon 1014 1259 . - . ID=Phyra87559.2;Parent=Phyra87559;constitutive=1;rank=2 scaffold_2167 . CDS 2278 3522 . - 0 ID=Phyra87559;Parent=Phyra87559;rank=1 scaffold_2167 . exon 2278 3522 . - . ID=Phyra87559.1;Parent=Phyra87559;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2051 1 3563 scaffold_2051 . repeat_region 1251 2573 . ? . description=dust scaffold_2051 ensembl protein_coding_gene 927 3563 . - . ID=Phyra87482;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2051000001;logic_name=jgi_phyra1 scaffold_2051 ensembl transcript 927 3563 . - . ID=Phyra87482;Parent=Phyra87482;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2051 . CDS 927 1033 . - 0 ID=Phyra87482;Parent=Phyra87482;rank=2 scaffold_2051 . exon 927 1033 . - . ID=Phyra87482.2;Parent=Phyra87482;constitutive=1;ensembl_phase=1;rank=2 scaffold_2051 . CDS 2764 3562 . - 0 ID=Phyra87482;Parent=Phyra87482;rank=1 scaffold_2051 . exon 2764 3563 . - . ID=Phyra87482.1;Parent=Phyra87482;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2055 1 3563 scaffold_2055 . repeat_region 32 91 . ? . description=trf scaffold_2055 . biological_region 797 801 0.999 - . logic_name=eponine scaffold_2055 . repeat_region 1511 2207 . ? . description=dust scaffold_2055 . repeat_region 2419 2427 . ? . description=dust scaffold_2055 ensembl protein_coding_gene 56 1113 . + . ID=Phyra87485;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2055000001;logic_name=jgi_phyra1 scaffold_2055 ensembl transcript 56 1113 . + . ID=Phyra87485;Parent=Phyra87485;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2055 . CDS 56 275 . + 0 ID=Phyra87485;Parent=Phyra87485;rank=1 scaffold_2055 . exon 56 275 . + . ID=Phyra87485.1;Parent=Phyra87485;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2055 . CDS 393 624 . + 0 ID=Phyra87485;Parent=Phyra87485;rank=2 scaffold_2055 . exon 393 624 . + . ID=Phyra87485.2;Parent=Phyra87485;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2055 . CDS 864 1113 . + 0 ID=Phyra87485;Parent=Phyra87485;rank=3 scaffold_2055 . exon 864 1113 . + . ID=Phyra87485.3;Parent=Phyra87485;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_2052 1 3564 scaffold_2052 . repeat_region 1046 2161 . ? . description=dust scaffold_2052 . biological_region 2308 2310 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2053 1 3565 scaffold_2053 . repeat_region 1511 2779 . ? . description=dust scaffold_2053 . repeat_region 3347 3356 . ? . description=dust scaffold_2053 ensembl protein_coding_gene 39 565 . - . ID=Phyra87483;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2053000001;logic_name=jgi_phyra1 scaffold_2053 ensembl transcript 39 565 . - . ID=Phyra87483;Parent=Phyra87483;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2053 . CDS 39 201 . - 0 ID=Phyra87483;Parent=Phyra87483;rank=2 scaffold_2053 . exon 39 201 . - . ID=Phyra87483.2;Parent=Phyra87483;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2053 . CDS 310 565 . - 0 ID=Phyra87483;Parent=Phyra87483;rank=1 scaffold_2053 . exon 310 565 . - . ID=Phyra87483.1;Parent=Phyra87483;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2049 1 3568 scaffold_2049 . biological_region 346 348 0.999 - . logic_name=eponine scaffold_2049 . repeat_region 1119 2362 . ? . description=dust scaffold_2049 . repeat_region 3393 3459 . + . description=(CTCA)n scaffold_2049 . repeat_region 3399 3459 . ? . description=trf scaffold_2049 . repeat_region 3400 3459 . ? . description=dust scaffold_2049 ensembl protein_coding_gene 593 2570 . + . ID=Phyra87481;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2049000001;logic_name=jgi_phyra1 scaffold_2049 ensembl transcript 593 2570 . + . ID=Phyra87481;Parent=Phyra87481;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2049 . CDS 593 1099 . + 0 ID=Phyra87481;Parent=Phyra87481;rank=1 scaffold_2049 . exon 593 1099 . + . ID=Phyra87481.1;Parent=Phyra87481;constitutive=1;rank=1 scaffold_2049 . CDS 2562 2570 . + 0 ID=Phyra87481;Parent=Phyra87481;rank=2 scaffold_2049 . exon 2562 2570 . + . ID=Phyra87481.2;Parent=Phyra87481;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2048 1 3569 scaffold_2048 . repeat_region 268 971 . - . description=GypsyPi-1c_I-int scaffold_2048 . repeat_region 1184 2207 . ? . description=dust scaffold_2048 . repeat_region 2215 3021 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_2088 1 3569 scaffold_2088 . biological_region 133 137 0.999 - . logic_name=eponine scaffold_2088 . repeat_region 1353 2358 . ? . description=dust scaffold_2088 ensembl protein_coding_gene 2403 3083 . + . ID=Phyra87508;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2088000001;logic_name=jgi_phyra1 scaffold_2088 ensembl transcript 2403 3083 . + . ID=Phyra87508;Parent=Phyra87508;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2088 . CDS 2403 3083 . + 0 ID=Phyra87508;Parent=Phyra87508;rank=1 scaffold_2088 . exon 2403 3083 . + . ID=Phyra87508.1;Parent=Phyra87508;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2309 1 3569 scaffold_2309 . repeat_region 910 2145 . ? . description=dust scaffold_2309 . repeat_region 2238 2247 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2046 1 3570 scaffold_2046 . repeat_region 1306 2502 . ? . description=dust scaffold_2046 . repeat_region 2521 3565 . + . description=GypsyPi-1c_I-int scaffold_2046 ensembl protein_coding_gene 2671 3096 . + . ID=Phyra87479;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2046000001;logic_name=jgi_phyra1 scaffold_2046 ensembl transcript 2671 3096 . + . ID=Phyra87479;Parent=Phyra87479;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2046 . CDS 2671 3096 . + 0 ID=Phyra87479;Parent=Phyra87479;rank=1 scaffold_2046 . exon 2671 3096 . + . ID=Phyra87479.1;Parent=Phyra87479;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2050 1 3570 scaffold_2050 . repeat_region 715 725 . ? . description=dust scaffold_2050 . repeat_region 1454 2756 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2083 1 3570 scaffold_2083 . repeat_region 920 2350 . ? . description=dust scaffold_2083 ensembl protein_coding_gene 22 522 . - . ID=Phyra87503;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2083000001;logic_name=jgi_phyra1 scaffold_2083 ensembl transcript 22 522 . - . ID=Phyra87503;Parent=Phyra87503;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2083 . CDS 22 522 . - 0 ID=Phyra87503;Parent=Phyra87503;rank=1 scaffold_2083 . exon 22 522 . - . ID=Phyra87503.1;Parent=Phyra87503;constitutive=1;rank=1 scaffold_2083 ensembl protein_coding_gene 2424 3500 . + . ID=Phyra87504;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2083000002;logic_name=jgi_phyra1 scaffold_2083 ensembl transcript 2424 3500 . + . ID=Phyra87504;Parent=Phyra87504;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2083 . CDS 2424 3500 . + 0 ID=Phyra87504;Parent=Phyra87504;rank=1 scaffold_2083 . exon 2424 3500 . + . ID=Phyra87504.1;Parent=Phyra87504;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2044 1 3571 scaffold_2044 . repeat_region 5 782 . + . description=Polinton-1_PI scaffold_2044 . repeat_region 921 2173 . ? . description=dust scaffold_2044 . biological_region 2463 2464 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2042 1 3573 scaffold_2042 . repeat_region 1270 1290 . ? . description=trf scaffold_2042 . repeat_region 1845 2669 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2043 1 3573 scaffold_2043 . repeat_region 1130 1387 . ? . description=dust scaffold_2043 ensembl protein_coding_gene 1495 3280 . + . ID=Phyra87478;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2043000001;logic_name=jgi_phyra1 scaffold_2043 ensembl transcript 1495 3280 . + . ID=Phyra87478;Parent=Phyra87478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2043 . CDS 1495 3280 . + 0 ID=Phyra87478;Parent=Phyra87478;rank=1 scaffold_2043 . exon 1495 3280 . + . ID=Phyra87478.1;Parent=Phyra87478;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2036 1 3576 scaffold_2036 . repeat_region 1234 2360 . ? . description=dust scaffold_2036 . repeat_region 3029 3060 . ? . description=trf scaffold_2036 . repeat_region 3323 3381 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2039 1 3576 ##gff-version 3 ##sequence-region scaffold_2040 1 3576 scaffold_2040 . repeat_region 1508 2479 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2037 1 3577 scaffold_2037 . biological_region 604 606 0.999 + . logic_name=eponine scaffold_2037 . biological_region 788 793 0.999 + . logic_name=eponine scaffold_2037 . repeat_region 1342 2496 . ? . description=dust scaffold_2037 ensembl protein_coding_gene 93 1266 . - . ID=Phyra87475;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2037000001;logic_name=jgi_phyra1 scaffold_2037 ensembl transcript 93 1266 . - . ID=Phyra87475;Parent=Phyra87475;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2037 . CDS 93 290 . - 0 ID=Phyra87475;Parent=Phyra87475;rank=3 scaffold_2037 . exon 93 290 . - . ID=Phyra87475.3;Parent=Phyra87475;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2037 . CDS 315 332 . - 0 ID=Phyra87475;Parent=Phyra87475;rank=2 scaffold_2037 . exon 315 332 . - . ID=Phyra87475.2;Parent=Phyra87475;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2037 . CDS 387 1266 . - 0 ID=Phyra87475;Parent=Phyra87475;rank=1 scaffold_2037 . exon 387 1266 . - . ID=Phyra87475.1;Parent=Phyra87475;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2032 1 3578 scaffold_2032 . repeat_region 219 922 . - . description=GypsyPi-1c_I-int scaffold_2032 . repeat_region 1174 1255 . - . description=GypsyPi-1c_I-int scaffold_2032 . repeat_region 1256 2300 . ? . description=dust scaffold_2032 . repeat_region 2715 2729 . ? . description=dust scaffold_2032 ensembl protein_coding_gene 290 544 . - . ID=Phyra44262;biotype=protein_coding;external_name=gwEuk.2032.2.1;logic_name=jgi_phyra1 scaffold_2032 ensembl transcript 290 544 . - . ID=Phyra44262;Parent=Phyra44262;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2032 . CDS 290 544 . - 0 ID=Phyra44262;Parent=Phyra44262;rank=1 scaffold_2032 . exon 290 544 . - . ID=Phyra44262.1;Parent=Phyra44262;constitutive=1;rank=1 scaffold_2032 ensembl protein_coding_gene 2814 3508 . - . ID=Phyra87472;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2032000001;logic_name=jgi_phyra1 scaffold_2032 ensembl transcript 2814 3508 . - . ID=Phyra87472;Parent=Phyra87472;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2032 . CDS 2814 2873 . - 0 ID=Phyra87472;Parent=Phyra87472;rank=2 scaffold_2032 . exon 2814 2873 . - . ID=Phyra87472.2;Parent=Phyra87472;constitutive=1;rank=2 scaffold_2032 . CDS 3005 3508 . - 0 ID=Phyra87472;Parent=Phyra87472;rank=1 scaffold_2032 . exon 3005 3508 . - . ID=Phyra87472.1;Parent=Phyra87472;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2033 1 3578 scaffold_2033 . repeat_region 864 2354 . ? . description=dust scaffold_2033 ensembl protein_coding_gene 55 500 . - . ID=Phyra87473;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2033000001;logic_name=jgi_phyra1 scaffold_2033 ensembl transcript 55 500 . - . ID=Phyra87473;Parent=Phyra87473;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2033 . CDS 55 500 . - 0 ID=Phyra87473;Parent=Phyra87473;rank=1 scaffold_2033 . exon 55 500 . - . ID=Phyra87473.1;Parent=Phyra87473;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2034 1 3578 scaffold_2034 . repeat_region 1183 2552 . ? . description=dust scaffold_2034 . biological_region 2634 2638 0.999 + . logic_name=eponine scaffold_2034 ensembl protein_coding_gene 2607 3578 . - . ID=Phyra44264;biotype=protein_coding;external_name=gwEuk.2034.1.1;logic_name=jgi_phyra1 scaffold_2034 ensembl transcript 2607 3578 . - . ID=Phyra44264;Parent=Phyra44264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2034 . CDS 2607 3578 . - 0 ID=Phyra44264;Parent=Phyra44264;rank=1 scaffold_2034 . exon 2607 3578 . - . ID=Phyra44264.1;Parent=Phyra44264;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2035 1 3578 scaffold_2035 . repeat_region 812 2368 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2030 1 3581 scaffold_2030 . repeat_region 137 151 . ? . description=dust scaffold_2030 . repeat_region 904 1768 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2025 1 3584 scaffold_2025 . biological_region 100 102 0.999 - . logic_name=eponine scaffold_2025 . repeat_region 1127 2609 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2024 1 3585 scaffold_2024 . repeat_region 671 713 . ? . description=trf scaffold_2024 . repeat_region 1314 2750 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2026 1 3585 scaffold_2026 . repeat_region 1827 2355 . ? . description=dust scaffold_2026 ensembl protein_coding_gene 259 1137 . - . ID=Phyra87465;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2026000001;logic_name=jgi_phyra1 scaffold_2026 ensembl transcript 259 1137 . - . ID=Phyra87465;Parent=Phyra87465;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2026 . CDS 259 1137 . - 0 ID=Phyra87465;Parent=Phyra87465;rank=1 scaffold_2026 . exon 259 1137 . - . ID=Phyra87465.1;Parent=Phyra87465;constitutive=1;rank=1 scaffold_2026 ensembl protein_coding_gene 1312 3424 . - . ID=Phyra87466;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2026000002;logic_name=jgi_phyra1 scaffold_2026 ensembl transcript 1312 3424 . - . ID=Phyra87466;Parent=Phyra87466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2026 . CDS 1312 1689 . - 0 ID=Phyra87466;Parent=Phyra87466;rank=3 scaffold_2026 . exon 1312 1689 . - . ID=Phyra87466.3;Parent=Phyra87466;constitutive=1;rank=3 scaffold_2026 . CDS 2486 3284 . - 0 ID=Phyra87466;Parent=Phyra87466;rank=2 scaffold_2026 . exon 2486 3284 . - . ID=Phyra87466.2;Parent=Phyra87466;constitutive=1;ensembl_phase=2;rank=2 scaffold_2026 . CDS 3324 3424 . - 0 ID=Phyra87466;Parent=Phyra87466;rank=1 scaffold_2026 . exon 3324 3424 . - . ID=Phyra87466.1;Parent=Phyra87466;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2029 1 3585 scaffold_2029 ensembl protein_coding_gene 586 1461 . + . ID=Phyra44260;biotype=protein_coding;external_name=gwEuk.2029.4.1;logic_name=jgi_phyra1 scaffold_2029 ensembl transcript 586 1461 . + . ID=Phyra44260;Parent=Phyra44260;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2029 . CDS 586 1461 . + 0 ID=Phyra44260;Parent=Phyra44260;rank=1 scaffold_2029 . exon 586 1461 . + . ID=Phyra44260.1;Parent=Phyra44260;constitutive=1;rank=1 scaffold_2029 ensembl protein_coding_gene 6 326 . + . ID=Phyra87470;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2029000001;logic_name=jgi_phyra1 scaffold_2029 ensembl transcript 6 326 . + . ID=Phyra87470;Parent=Phyra87470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2029 . CDS 6 326 . + 0 ID=Phyra87470;Parent=Phyra87470;rank=1 scaffold_2029 . exon 6 326 . + . ID=Phyra87470.1;Parent=Phyra87470;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2023 1 3586 scaffold_2023 . repeat_region 980 1026 . ? . description=trf scaffold_2023 . repeat_region 1490 2465 . ? . description=dust scaffold_2023 . biological_region 3164 3170 0.999 + . logic_name=eponine scaffold_2023 ensembl protein_coding_gene 34 827 . - . ID=Phyra87464;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2023000001;logic_name=jgi_phyra1 scaffold_2023 ensembl transcript 34 827 . - . ID=Phyra87464;Parent=Phyra87464;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2023 . CDS 34 827 . - 0 ID=Phyra87464;Parent=Phyra87464;rank=1 scaffold_2023 . exon 34 827 . - . ID=Phyra87464.1;Parent=Phyra87464;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2027 1 3586 scaffold_2027 . biological_region 420 424 0.999 + . logic_name=eponine scaffold_2027 . repeat_region 1091 2125 . ? . description=dust scaffold_2027 . repeat_region 2167 3212 . + . description=GypsyPi-1c_I-int scaffold_2027 ensembl protein_coding_gene 2129 2503 . + . ID=Phyra44251;biotype=protein_coding;external_name=gwEuk.2027.1.1;logic_name=jgi_phyra1 scaffold_2027 ensembl transcript 2129 2503 . + . ID=Phyra44251;Parent=Phyra44251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2027 . CDS 2129 2503 . + 0 ID=Phyra44251;Parent=Phyra44251;rank=1 scaffold_2027 . exon 2129 2503 . + . ID=Phyra44251.1;Parent=Phyra44251;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2021 1 3588 scaffold_2021 . repeat_region 1276 2222 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2096 1 3588 scaffold_2096 . biological_region 305 306 0.999 - . logic_name=eponine scaffold_2096 . repeat_region 1358 2627 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2019 1 3589 scaffold_2019 . repeat_region 598 610 . ? . description=dust scaffold_2019 . repeat_region 1233 2332 . ? . description=dust scaffold_2019 . repeat_region 2959 2971 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2047 1 3589 scaffold_2047 . repeat_region 1260 2460 . ? . description=dust scaffold_2047 . repeat_region 2960 2978 . ? . description=dust scaffold_2047 ensembl protein_coding_gene 799 2817 . + . ID=Phyra87480;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2047000001;logic_name=jgi_phyra1 scaffold_2047 ensembl transcript 799 2817 . + . ID=Phyra87480;Parent=Phyra87480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2047 . CDS 799 1248 . + 0 ID=Phyra87480;Parent=Phyra87480;rank=1 scaffold_2047 . exon 799 1248 . + . ID=Phyra87480.1;Parent=Phyra87480;constitutive=1;rank=1 scaffold_2047 . CDS 2569 2817 . + 0 ID=Phyra87480;Parent=Phyra87480;rank=2 scaffold_2047 . exon 2569 2817 . + . ID=Phyra87480.2;Parent=Phyra87480;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2014 1 3590 scaffold_2014 . biological_region 119 121 0.999 + . logic_name=eponine scaffold_2014 . biological_region 542 544 0.999 + . logic_name=eponine scaffold_2014 . biological_region 611 617 0.999 + . logic_name=eponine scaffold_2014 . biological_region 653 658 0.999 - . logic_name=eponine scaffold_2014 . repeat_region 1031 2038 . ? . description=dust scaffold_2014 . biological_region 2524 2527 0.999 + . logic_name=eponine scaffold_2014 ensembl protein_coding_gene 58 2255 . + . ID=Phyra87457;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2014000001;logic_name=jgi_phyra1 scaffold_2014 ensembl transcript 58 2255 . + . ID=Phyra87457;Parent=Phyra87457;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2014 . CDS 58 719 . + 0 ID=Phyra87457;Parent=Phyra87457;rank=1 scaffold_2014 . exon 58 719 . + . ID=Phyra87457.1;Parent=Phyra87457;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2014 . CDS 743 1012 . + 0 ID=Phyra87457;Parent=Phyra87457;rank=2 scaffold_2014 . exon 743 1012 . + . ID=Phyra87457.2;Parent=Phyra87457;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2014 . CDS 2243 2255 . + 0 ID=Phyra87457;Parent=Phyra87457;rank=3 scaffold_2014 . exon 2243 2255 . + . ID=Phyra87457.3;Parent=Phyra87457;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_2018 1 3590 scaffold_2018 . repeat_region 1279 2196 . ? . description=dust scaffold_2018 ensembl protein_coding_gene 40 3585 . - . ID=Phyra87462;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2018000001;logic_name=jgi_phyra1 scaffold_2018 ensembl transcript 40 3585 . - . ID=Phyra87462;Parent=Phyra87462;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2018 . CDS 40 337 . - 0 ID=Phyra87462;Parent=Phyra87462;rank=4 scaffold_2018 . exon 40 337 . - . ID=Phyra87462.4;Parent=Phyra87462;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_2018 . CDS 385 1265 . - 0 ID=Phyra87462;Parent=Phyra87462;rank=3 scaffold_2018 . exon 385 1265 . - . ID=Phyra87462.3;Parent=Phyra87462;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2018 . CDS 2208 2839 . - 0 ID=Phyra87462;Parent=Phyra87462;rank=2 scaffold_2018 . exon 2208 2839 . - . ID=Phyra87462.2;Parent=Phyra87462;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2018 . CDS 2869 3585 . - 0 ID=Phyra87462;Parent=Phyra87462;rank=1 scaffold_2018 . exon 2869 3585 . - . ID=Phyra87462.1;Parent=Phyra87462;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2178 1 3591 scaffold_2178 . repeat_region 414 456 . ? . description=trf scaffold_2178 . repeat_region 1132 2388 . ? . description=dust scaffold_2178 . biological_region 2429 2430 0.999 + . logic_name=eponine scaffold_2178 ensembl protein_coding_gene 513 3485 . - . ID=Phyra87566;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2178000001;logic_name=jgi_phyra1 scaffold_2178 ensembl transcript 513 3485 . - . ID=Phyra87566;Parent=Phyra87566;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2178 . CDS 513 1047 . - 0 ID=Phyra87566;Parent=Phyra87566;rank=2 scaffold_2178 . exon 513 1047 . - . ID=Phyra87566.2;Parent=Phyra87566;constitutive=1;ensembl_phase=2;rank=2 scaffold_2178 . CDS 2416 3485 . - 0 ID=Phyra87566;Parent=Phyra87566;rank=1 scaffold_2178 . exon 2416 3485 . - . ID=Phyra87566.1;Parent=Phyra87566;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2020 1 3592 scaffold_2020 . repeat_region 1185 2430 . ? . description=dust scaffold_2020 ensembl protein_coding_gene 8 1183 . + . ID=Phyra44245;biotype=protein_coding;external_name=gwEuk.2020.1.1;logic_name=jgi_phyra1 scaffold_2020 ensembl transcript 8 1183 . + . ID=Phyra44245;Parent=Phyra44245;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2020 . CDS 8 1183 . + 0 ID=Phyra44245;Parent=Phyra44245;rank=1 scaffold_2020 . exon 8 1183 . + . ID=Phyra44245.1;Parent=Phyra44245;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2017 1 3594 scaffold_2017 . repeat_region 40 1367 . + . description=GypsyPi-1c_I-int scaffold_2017 . repeat_region 1445 2274 . ? . description=dust scaffold_2017 . repeat_region 3130 3173 . ? . description=trf scaffold_2017 ensembl protein_coding_gene 41 1097 . + . ID=Phyra87461;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2017000001;logic_name=jgi_phyra1 scaffold_2017 ensembl transcript 41 1097 . + . ID=Phyra87461;Parent=Phyra87461;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2017 . CDS 41 1000 . + 0 ID=Phyra87461;Parent=Phyra87461;rank=1 scaffold_2017 . exon 41 1000 . + . ID=Phyra87461.1;Parent=Phyra87461;constitutive=1;rank=1 scaffold_2017 . CDS 1059 1097 . + 0 ID=Phyra87461;Parent=Phyra87461;rank=2 scaffold_2017 . exon 1059 1097 . + . ID=Phyra87461.2;Parent=Phyra87461;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2011 1 3595 scaffold_2011 . repeat_region 1 339 . - . description=GypsyPi-1c_I-int scaffold_2011 . biological_region 812 813 0.999 - . logic_name=eponine scaffold_2011 . biological_region 864 868 0.999 - . logic_name=eponine scaffold_2011 . biological_region 904 907 0.999 + . logic_name=eponine scaffold_2011 . biological_region 942 942 0.999 + . logic_name=eponine scaffold_2011 . biological_region 967 970 0.999 - . logic_name=eponine scaffold_2011 . biological_region 1018 1022 0.999 - . logic_name=eponine scaffold_2011 . repeat_region 1358 1456 . - . description=GypsyPi-1c_I-int scaffold_2011 . repeat_region 1592 2484 . ? . description=dust scaffold_2011 . biological_region 2903 2907 0.999 - . logic_name=eponine scaffold_2011 ensembl protein_coding_gene 102 977 . - . ID=Phyra87455;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2011000001;logic_name=jgi_phyra1 scaffold_2011 ensembl transcript 102 977 . - . ID=Phyra87455;Parent=Phyra87455;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2011 . CDS 102 977 . - 0 ID=Phyra87455;Parent=Phyra87455;rank=1 scaffold_2011 . exon 102 977 . - . ID=Phyra87455.1;Parent=Phyra87455;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2016 1 3595 scaffold_2016 . repeat_region 449 491 . ? . description=trf scaffold_2016 . repeat_region 1813 1854 . ? . description=trf scaffold_2016 . repeat_region 2123 2165 . ? . description=trf scaffold_2016 . repeat_region 2264 2310 . ? . description=trf scaffold_2016 . biological_region 2722 2726 0.999 - . logic_name=eponine scaffold_2016 . repeat_region 3208 3250 . ? . description=trf scaffold_2016 ensembl protein_coding_gene 40 1521 . - . ID=Phyra87459;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2016000001;logic_name=jgi_phyra1 scaffold_2016 ensembl transcript 40 1521 . - . ID=Phyra87459;Parent=Phyra87459;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2016 . CDS 40 185 . - 0 ID=Phyra87459;Parent=Phyra87459;rank=2 scaffold_2016 . exon 40 185 . - . ID=Phyra87459.2;Parent=Phyra87459;constitutive=1;ensembl_phase=1;rank=2 scaffold_2016 . CDS 546 1521 . - 0 ID=Phyra87459;Parent=Phyra87459;rank=1 scaffold_2016 . exon 546 1521 . - . ID=Phyra87459.1;Parent=Phyra87459;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2016 ensembl protein_coding_gene 2352 3074 . - . ID=Phyra87460;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2016000002;logic_name=jgi_phyra1 scaffold_2016 ensembl transcript 2352 3074 . - . ID=Phyra87460;Parent=Phyra87460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2016 . CDS 2352 2771 . - 0 ID=Phyra87460;Parent=Phyra87460;rank=2 scaffold_2016 . exon 2352 2771 . - . ID=Phyra87460.2;Parent=Phyra87460;constitutive=1;rank=2 scaffold_2016 . CDS 2883 3074 . - 0 ID=Phyra87460;Parent=Phyra87460;rank=1 scaffold_2016 . exon 2883 3074 . - . ID=Phyra87460.1;Parent=Phyra87460;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2028 1 3595 scaffold_2028 . biological_region 48 52 0.999 + . logic_name=eponine scaffold_2028 . repeat_region 1579 1628 . ? . description=trf scaffold_2028 . biological_region 1593 1599 0.999 + . logic_name=eponine scaffold_2028 . biological_region 1635 1636 0.999 + . logic_name=eponine scaffold_2028 . repeat_region 2344 2351 . ? . description=dust scaffold_2028 ensembl pseudogene 2507 3099 . + . ID=Phyra44254;biotype=pseudogene;external_name=gwEuk.2028.3.1;logic_name=jgi_phyra1 scaffold_2028 ensembl pseudogene 2507 3099 . + . ID=Phyra44254;Parent=Phyra44254;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_2028 . exon 2507 2951 . + . ID=Phyra44254.1;Parent=Phyra44254;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2028 . exon 2967 3099 . + . ID=Phyra44254.2;Parent=Phyra44254;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2028 ensembl protein_coding_gene 34 445 . - . ID=Phyra87467;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2028000001;logic_name=jgi_phyra1 scaffold_2028 ensembl transcript 34 445 . - . ID=Phyra87467;Parent=Phyra87467;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2028 . CDS 34 445 . - 0 ID=Phyra87467;Parent=Phyra87467;rank=1 scaffold_2028 . exon 34 445 . - . ID=Phyra87467.1;Parent=Phyra87467;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2028 ensembl protein_coding_gene 3273 3587 . - . ID=Phyra87469;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2028000003;logic_name=jgi_phyra1 scaffold_2028 ensembl transcript 3273 3587 . - . ID=Phyra87469;Parent=Phyra87469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2028 . CDS 3273 3587 . - 0 ID=Phyra87469;Parent=Phyra87469;rank=1 scaffold_2028 . exon 3273 3587 . - . ID=Phyra87469.1;Parent=Phyra87469;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2010 1 3596 scaffold_2010 . repeat_region 1417 2159 . ? . description=dust scaffold_2010 ensembl protein_coding_gene 754 1298 . - . ID=Phyra87453;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2010000001;logic_name=jgi_phyra1 scaffold_2010 ensembl transcript 754 1298 . - . ID=Phyra87453;Parent=Phyra87453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2010 . CDS 754 1187 . - 0 ID=Phyra87453;Parent=Phyra87453;rank=2 scaffold_2010 . exon 754 1187 . - . ID=Phyra87453.2;Parent=Phyra87453;constitutive=1;ensembl_phase=1;rank=2 scaffold_2010 . CDS 1229 1298 . - 0 ID=Phyra87453;Parent=Phyra87453;rank=1 scaffold_2010 . exon 1229 1298 . - . ID=Phyra87453.1;Parent=Phyra87453;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2010 ensembl protein_coding_gene 2225 3517 . - . ID=Phyra87454;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2010000002;logic_name=jgi_phyra1 scaffold_2010 ensembl transcript 2225 3517 . - . ID=Phyra87454;Parent=Phyra87454;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2010 . CDS 2225 3517 . - 0 ID=Phyra87454;Parent=Phyra87454;rank=1 scaffold_2010 . exon 2225 3517 . - . ID=Phyra87454.1;Parent=Phyra87454;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2015 1 3596 scaffold_2015 . biological_region 603 606 0.999 + . logic_name=eponine scaffold_2015 . biological_region 956 958 0.999 + . logic_name=eponine scaffold_2015 . repeat_region 1154 2284 . ? . description=dust scaffold_2015 . repeat_region 3354 3395 . ? . description=trf scaffold_2015 ensembl protein_coding_gene 1 2879 . + . ID=Phyra87458;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2015000001;logic_name=jgi_phyra1 scaffold_2015 ensembl transcript 1 2879 . + . ID=Phyra87458;Parent=Phyra87458;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2015 . CDS 1 1106 . + 0 ID=Phyra87458;Parent=Phyra87458;rank=1 scaffold_2015 . exon 1 1106 . + . ID=Phyra87458.1;Parent=Phyra87458;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2015 . CDS 2396 2879 . + 0 ID=Phyra87458;Parent=Phyra87458;rank=2 scaffold_2015 . exon 2396 2879 . + . ID=Phyra87458.2;Parent=Phyra87458;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_2012 1 3597 scaffold_2012 . repeat_region 833 894 . ? . description=dust scaffold_2012 . repeat_region 1429 2527 . ? . description=dust scaffold_2012 ensembl protein_coding_gene 543 1273 . - . ID=Phyra87456;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2012000001;logic_name=jgi_phyra1 scaffold_2012 ensembl transcript 543 1273 . - . ID=Phyra87456;Parent=Phyra87456;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2012 . CDS 543 590 . - 0 ID=Phyra87456;Parent=Phyra87456;rank=3 scaffold_2012 . exon 543 590 . - . ID=Phyra87456.3;Parent=Phyra87456;constitutive=1;rank=3 scaffold_2012 . CDS 751 901 . - 0 ID=Phyra87456;Parent=Phyra87456;rank=2 scaffold_2012 . exon 751 901 . - . ID=Phyra87456.2;Parent=Phyra87456;constitutive=1;ensembl_phase=2;rank=2 scaffold_2012 . CDS 933 1273 . - 0 ID=Phyra87456;Parent=Phyra87456;rank=1 scaffold_2012 . exon 933 1273 . - . ID=Phyra87456.1;Parent=Phyra87456;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2006 1 3599 scaffold_2006 . repeat_region 400 418 . ? . description=dust scaffold_2006 . repeat_region 876 2150 . ? . description=dust scaffold_2006 . repeat_region 2300 2323 . ? . description=dust scaffold_2006 . repeat_region 2816 2828 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2007 1 3599 scaffold_2007 . repeat_region 1273 2433 . ? . description=dust scaffold_2007 ensembl tRNA_gene 379 455 . - . ID=EPrPRAG00000000038;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_2007 ensembl transcript 379 455 . - . ID=EPrPRAT00000000038;Parent=EPrPRAG00000000038;biotype=tRNA;logic_name=ncrna_eg scaffold_2007 . exon 379 455 . - . ID=EPrPRAE00000000038;Parent=EPrPRAT00000000038;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2005 1 3601 scaffold_2005 . repeat_region 1259 1816 . ? . description=dust scaffold_2005 . repeat_region 2747 2759 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2003 1 3603 scaffold_2003 . repeat_region 156 198 . ? . description=trf scaffold_2003 . repeat_region 1377 2188 . ? . description=dust scaffold_2003 . repeat_region 2718 2760 . ? . description=trf scaffold_2003 ensembl protein_coding_gene 685 1131 . + . ID=Phyra44226;biotype=protein_coding;external_name=gwEuk.2003.4.1;logic_name=jgi_phyra1 scaffold_2003 ensembl transcript 685 1131 . + . ID=Phyra44226;Parent=Phyra44226;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2003 . CDS 685 1131 . + 0 ID=Phyra44226;Parent=Phyra44226;rank=1 scaffold_2003 . exon 685 1131 . + . ID=Phyra44226.1;Parent=Phyra44226;constitutive=1;rank=1 scaffold_2003 ensembl protein_coding_gene 2214 2624 . + . ID=Phyra87451;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2003000002;logic_name=jgi_phyra1 scaffold_2003 ensembl transcript 2214 2624 . + . ID=Phyra87451;Parent=Phyra87451;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2003 . CDS 2214 2624 . + 0 ID=Phyra87451;Parent=Phyra87451;rank=1 scaffold_2003 . exon 2214 2624 . + . ID=Phyra87451.1;Parent=Phyra87451;constitutive=1;rank=1 scaffold_2003 ensembl protein_coding_gene 3031 3569 . - . ID=Phyra87452;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2003000003;logic_name=jgi_phyra1 scaffold_2003 ensembl transcript 3031 3569 . - . ID=Phyra87452;Parent=Phyra87452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2003 . CDS 3031 3567 . - 0 ID=Phyra87452;Parent=Phyra87452;rank=1 scaffold_2003 . exon 3031 3569 . - . ID=Phyra87452.1;Parent=Phyra87452;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2247 1 3603 scaffold_2247 . repeat_region 9 79 . ? . description=trf scaffold_2247 . repeat_region 90 125 . ? . description=trf scaffold_2247 . repeat_region 153 257 . ? . description=trf scaffold_2247 . repeat_region 327 382 . ? . description=trf scaffold_2247 . repeat_region 437 469 . ? . description=trf scaffold_2247 . repeat_region 617 1511 . ? . description=dust scaffold_2247 . repeat_region 1713 1848 . ? . description=trf scaffold_2247 . repeat_region 2551 2579 . ? . description=trf scaffold_2247 . repeat_region 2551 2579 . ? . description=dust scaffold_2247 . repeat_region 2735 2785 . ? . description=trf scaffold_2247 . repeat_region 2735 2785 . ? . description=dust scaffold_2247 . repeat_region 2836 2898 . ? . description=trf scaffold_2247 . repeat_region 2965 3069 . ? . description=trf scaffold_2247 . repeat_region 3097 3132 . ? . description=trf scaffold_2247 . repeat_region 3137 3246 . ? . description=trf scaffold_2247 ensembl protein_coding_gene 2594 3418 . + . ID=Phyra72539;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2247000001;logic_name=jgi_phyra1 scaffold_2247 ensembl transcript 2594 3418 . + . ID=Phyra72539;Parent=Phyra72539;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2247 . CDS 2594 3418 . + 0 ID=Phyra72539;Parent=Phyra72539;rank=1 scaffold_2247 . exon 2594 3418 . + . ID=Phyra72539.1;Parent=Phyra72539;constitutive=1;rank=1 scaffold_2247 ensembl protein_coding_gene 22 610 . - . ID=Phyra87603;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2247000001;logic_name=jgi_phyra1 scaffold_2247 ensembl transcript 22 610 . - . ID=Phyra87603;Parent=Phyra87603;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2247 . CDS 22 610 . - 0 ID=Phyra87603;Parent=Phyra87603;rank=1 scaffold_2247 . exon 22 610 . - . ID=Phyra87603.1;Parent=Phyra87603;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2001 1 3605 scaffold_2001 . repeat_region 1 41 . - . description=GypsyPi-1c_I-int scaffold_2001 . repeat_region 42 349 . - . description=GypsyPi-1c_LTR scaffold_2001 . repeat_region 392 399 . ? . description=dust scaffold_2001 . repeat_region 1225 1817 . ? . description=dust scaffold_2001 . repeat_region 2989 3015 . ? . description=trf scaffold_2001 ensembl protein_coding_gene 2020 2826 . + . ID=Phyra87449;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2001000001;logic_name=jgi_phyra1 scaffold_2001 ensembl transcript 2020 2826 . + . ID=Phyra87449;Parent=Phyra87449;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2001 . CDS 2020 2826 . + 0 ID=Phyra87449;Parent=Phyra87449;rank=1 scaffold_2001 . exon 2020 2826 . + . ID=Phyra87449.1;Parent=Phyra87449;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2002 1 3605 scaffold_2002 . repeat_region 482 490 . ? . description=dust scaffold_2002 . repeat_region 1259 2474 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2000 1 3608 scaffold_2000 . repeat_region 227 279 . ? . description=trf scaffold_2000 . repeat_region 227 283 . ? . description=trf scaffold_2000 . repeat_region 964 1930 . ? . description=dust scaffold_2000 . biological_region 3058 3064 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1997 1 3609 scaffold_1997 . repeat_region 977 1761 . ? . description=dust scaffold_1997 ensembl protein_coding_gene 3004 3552 . - . ID=Phyra87446;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1997000001;logic_name=jgi_phyra1 scaffold_1997 ensembl transcript 3004 3552 . - . ID=Phyra87446;Parent=Phyra87446;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1997 . CDS 3004 3552 . - 0 ID=Phyra87446;Parent=Phyra87446;rank=1 scaffold_1997 . exon 3004 3552 . - . ID=Phyra87446.1;Parent=Phyra87446;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1998 1 3609 scaffold_1998 . repeat_region 1736 1745 . ? . description=dust scaffold_1998 ensembl protein_coding_gene 1424 2328 . + . ID=Phyra87447;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1998000001;logic_name=jgi_phyra1 scaffold_1998 ensembl transcript 1424 2328 . + . ID=Phyra87447;Parent=Phyra87447;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1998 . CDS 1424 1725 . + 0 ID=Phyra87447;Parent=Phyra87447;rank=1 scaffold_1998 . exon 1424 1725 . + . ID=Phyra87447.1;Parent=Phyra87447;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1998 . CDS 1890 1987 . + 0 ID=Phyra87447;Parent=Phyra87447;rank=2 scaffold_1998 . exon 1890 1987 . + . ID=Phyra87447.2;Parent=Phyra87447;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1998 . CDS 2087 2328 . + 0 ID=Phyra87447;Parent=Phyra87447;rank=3 scaffold_1998 . exon 2087 2328 . + . ID=Phyra87447.3;Parent=Phyra87447;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_2081 1 3611 scaffold_2081 . repeat_region 899 1801 . ? . description=dust scaffold_2081 . repeat_region 2130 2149 . ? . description=trf scaffold_2081 . repeat_region 2335 2394 . ? . description=trf scaffold_2081 ensembl protein_coding_gene 2180 3591 . + . ID=Phyra87502;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2081000001;logic_name=jgi_phyra1 scaffold_2081 ensembl transcript 2180 3591 . + . ID=Phyra87502;Parent=Phyra87502;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2081 . CDS 2180 3591 . + 0 ID=Phyra87502;Parent=Phyra87502;rank=1 scaffold_2081 . exon 2180 3591 . + . ID=Phyra87502.1;Parent=Phyra87502;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2123 1 3611 scaffold_2123 . repeat_region 953 2530 . ? . description=dust scaffold_2123 . biological_region 3056 3058 0.999 - . logic_name=eponine scaffold_2123 . biological_region 3061 3068 0.999 - . logic_name=eponine scaffold_2123 ensembl protein_coding_gene 2843 3581 . + . ID=Phyra87528;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2123000001;logic_name=jgi_phyra1 scaffold_2123 ensembl transcript 2843 3581 . + . ID=Phyra87528;Parent=Phyra87528;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2123 . CDS 2843 3581 . + 0 ID=Phyra87528;Parent=Phyra87528;rank=1 scaffold_2123 . exon 2843 3581 . + . ID=Phyra87528.1;Parent=Phyra87528;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1994 1 3612 scaffold_1994 . biological_region 57 60 0.999 + . logic_name=eponine scaffold_1994 . biological_region 395 403 0.999 + . logic_name=eponine scaffold_1994 . biological_region 441 444 0.999 - . logic_name=eponine scaffold_1994 . repeat_region 1065 1982 . ? . description=dust scaffold_1994 ensembl protein_coding_gene 9 668 . - . ID=Phyra87442;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1994000001;logic_name=jgi_phyra1 scaffold_1994 ensembl transcript 9 668 . - . ID=Phyra87442;Parent=Phyra87442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1994 . CDS 9 668 . - 0 ID=Phyra87442;Parent=Phyra87442;rank=1 scaffold_1994 . exon 9 668 . - . ID=Phyra87442.1;Parent=Phyra87442;constitutive=1;rank=1 scaffold_1994 ensembl protein_coding_gene 2523 3559 . + . ID=Phyra87443;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1994000002;logic_name=jgi_phyra1 scaffold_1994 ensembl transcript 2523 3559 . + . ID=Phyra87443;Parent=Phyra87443;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1994 . CDS 2523 3061 . + 0 ID=Phyra87443;Parent=Phyra87443;rank=1 scaffold_1994 . exon 2523 3061 . + . ID=Phyra87443.1;Parent=Phyra87443;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1994 . CDS 3173 3559 . + 0 ID=Phyra87443;Parent=Phyra87443;rank=2 scaffold_1994 . exon 3173 3559 . + . ID=Phyra87443.2;Parent=Phyra87443;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1996 1 3613 scaffold_1996 . biological_region 3047 3047 0.999 + . logic_name=eponine scaffold_1996 . biological_region 3064 3071 0.999 - . logic_name=eponine scaffold_1996 . repeat_region 3265 3306 . ? . description=trf scaffold_1996 ensembl protein_coding_gene 725 2443 . - . ID=Phyra87444;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1996000001;logic_name=jgi_phyra1 scaffold_1996 ensembl transcript 725 2443 . - . ID=Phyra87444;Parent=Phyra87444;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1996 . CDS 725 2443 . - 0 ID=Phyra87444;Parent=Phyra87444;rank=1 scaffold_1996 . exon 725 2443 . - . ID=Phyra87444.1;Parent=Phyra87444;constitutive=1;rank=1 scaffold_1996 ensembl protein_coding_gene 2944 3564 . + . ID=Phyra87445;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1996000002;logic_name=jgi_phyra1 scaffold_1996 ensembl transcript 2944 3564 . + . ID=Phyra87445;Parent=Phyra87445;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1996 . CDS 2944 3564 . + 0 ID=Phyra87445;Parent=Phyra87445;rank=1 scaffold_1996 . exon 2944 3564 . + . ID=Phyra87445.1;Parent=Phyra87445;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1995 1 3614 scaffold_1995 . repeat_region 1244 2261 . ? . description=dust scaffold_1995 . repeat_region 2986 3051 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1992 1 3615 scaffold_1992 . repeat_region 18 517 . + . description=GypsyPi-1c_I-int scaffold_1992 . repeat_region 1305 2275 . ? . description=dust scaffold_1992 ensembl protein_coding_gene 8 535 . + . ID=Phyra87440;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1992000001;logic_name=jgi_phyra1 scaffold_1992 ensembl transcript 8 535 . + . ID=Phyra87440;Parent=Phyra87440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1992 . CDS 8 535 . + 0 ID=Phyra87440;Parent=Phyra87440;rank=1 scaffold_1992 . exon 8 535 . + . ID=Phyra87440.1;Parent=Phyra87440;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1987 1 3617 scaffold_1987 . repeat_region 1215 1257 . ? . description=trf scaffold_1987 . repeat_region 1302 2116 . ? . description=dust scaffold_1987 ensembl protein_coding_gene 2377 3585 . + . ID=Phyra87438;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1987000001;logic_name=jgi_phyra1 scaffold_1987 ensembl transcript 2377 3585 . + . ID=Phyra87438;Parent=Phyra87438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1987 . CDS 2377 3585 . + 0 ID=Phyra87438;Parent=Phyra87438;rank=1 scaffold_1987 . exon 2377 3585 . + . ID=Phyra87438.1;Parent=Phyra87438;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1988 1 3617 scaffold_1988 . repeat_region 1520 2730 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1991 1 3619 scaffold_1991 . repeat_region 1 1379 . - . description=Polinton-1_PI scaffold_1991 . repeat_region 1413 2334 . ? . description=dust scaffold_1991 . repeat_region 2345 2452 . - . description=Polinton-1_PI scaffold_1991 . repeat_region 2632 2788 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1985 1 3620 scaffold_1985 . repeat_region 1325 2170 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2066 1 3620 scaffold_2066 . repeat_region 1116 2374 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1984 1 3621 scaffold_1984 . repeat_region 2063 2677 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1983 1 3622 scaffold_1983 . repeat_region 16 690 . - . description=GypsyPi-1c_I-int scaffold_1983 . biological_region 1163 1164 0.999 - . logic_name=eponine scaffold_1983 . biological_region 1215 1219 0.999 - . logic_name=eponine scaffold_1983 . biological_region 1338 1342 0.999 - . logic_name=eponine scaffold_1983 . repeat_region 1384 2523 . ? . description=dust scaffold_1983 . biological_region 2934 2938 0.999 - . logic_name=eponine scaffold_1983 ensembl protein_coding_gene 59 968 . - . ID=Phyra87436;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1983000001;logic_name=jgi_phyra1 scaffold_1983 ensembl transcript 59 968 . - . ID=Phyra87436;Parent=Phyra87436;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1983 . CDS 59 968 . - 0 ID=Phyra87436;Parent=Phyra87436;rank=1 scaffold_1983 . exon 59 968 . - . ID=Phyra87436.1;Parent=Phyra87436;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1978 1 3623 scaffold_1978 . repeat_region 766 774 . ? . description=dust scaffold_1978 . repeat_region 1479 2700 . ? . description=dust scaffold_1978 . biological_region 2790 2793 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1979 1 3623 scaffold_1979 . biological_region 816 820 0.999 + . logic_name=eponine scaffold_1979 . repeat_region 1005 1045 . ? . description=trf scaffold_1979 . repeat_region 1215 2564 . ? . description=dust scaffold_1979 . repeat_region 2756 2777 . ? . description=trf scaffold_1979 ensembl protein_coding_gene 3026 3601 . + . ID=Phyra43742;biotype=protein_coding;external_name=gwEuk.1979.5.1;logic_name=jgi_phyra1 scaffold_1979 ensembl transcript 3026 3601 . + . ID=Phyra43742;Parent=Phyra43742;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1979 . CDS 3026 3601 . + 0 ID=Phyra43742;Parent=Phyra43742;rank=1 scaffold_1979 . exon 3026 3601 . + . ID=Phyra43742.1;Parent=Phyra43742;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1980 1 3623 scaffold_1980 . repeat_region 272 291 . ? . description=dust scaffold_1980 . biological_region 771 773 0.999 + . logic_name=eponine scaffold_1980 . repeat_region 1172 2267 . ? . description=dust scaffold_1980 . biological_region 2731 2737 0.999 + . logic_name=eponine scaffold_1980 . biological_region 2806 2808 0.999 - . logic_name=eponine scaffold_1980 . biological_region 2822 2828 0.999 - . logic_name=eponine scaffold_1980 . biological_region 2887 2889 0.999 - . logic_name=eponine scaffold_1980 . biological_region 3358 3358 0.999 + . logic_name=eponine scaffold_1980 ensembl protein_coding_gene 2973 3565 . + . ID=Phyra87433;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1980000001;logic_name=jgi_phyra1 scaffold_1980 ensembl transcript 2973 3565 . + . ID=Phyra87433;Parent=Phyra87433;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1980 . CDS 2973 3099 . + 0 ID=Phyra87433;Parent=Phyra87433;rank=1 scaffold_1980 . exon 2973 3099 . + . ID=Phyra87433.1;Parent=Phyra87433;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1980 . CDS 3162 3565 . + 0 ID=Phyra87433;Parent=Phyra87433;rank=2 scaffold_1980 . exon 3162 3565 . + . ID=Phyra87433.2;Parent=Phyra87433;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1993 1 3623 scaffold_1993 . repeat_region 1418 2651 . ? . description=dust scaffold_1993 ensembl protein_coding_gene 1 1158 . + . ID=Phyra87441;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1993000001;logic_name=jgi_phyra1 scaffold_1993 ensembl transcript 1 1158 . + . ID=Phyra87441;Parent=Phyra87441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1993 . exon 1 1117 . + . ID=Phyra87441.1;Parent=Phyra87441;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_1993 . CDS 3 1117 . + 0 ID=Phyra87441;Parent=Phyra87441;rank=1 scaffold_1993 . CDS 1143 1158 . + 0 ID=Phyra87441;Parent=Phyra87441;rank=2 scaffold_1993 . exon 1143 1158 . + . ID=Phyra87441.2;Parent=Phyra87441;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1976 1 3624 scaffold_1976 . repeat_region 911 921 . ? . description=dust scaffold_1976 . repeat_region 1449 2212 . ? . description=dust scaffold_1976 . repeat_region 3003 3010 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1973 1 3626 scaffold_1973 . biological_region 548 550 0.999 - . logic_name=eponine scaffold_1973 . repeat_region 1271 2340 . ? . description=dust scaffold_1973 ensembl protein_coding_gene 2604 3621 . - . ID=Phyra87430;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1973000001;logic_name=jgi_phyra1 scaffold_1973 ensembl transcript 2604 3621 . - . ID=Phyra87430;Parent=Phyra87430;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1973 . CDS 2604 2619 . - 0 ID=Phyra87430;Parent=Phyra87430;rank=2 scaffold_1973 . exon 2604 2619 . - . ID=Phyra87430.2;Parent=Phyra87430;constitutive=1;ensembl_phase=2;rank=2 scaffold_1973 . CDS 2645 3621 . - 0 ID=Phyra87430;Parent=Phyra87430;rank=1 scaffold_1973 . exon 2645 3621 . - . ID=Phyra87430.1;Parent=Phyra87430;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1974 1 3626 scaffold_1974 . repeat_region 1267 2402 . ? . description=dust scaffold_1974 . repeat_region 2651 2692 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1975 1 3626 scaffold_1975 . repeat_region 3 79 . - . description=GypsyPi-1c_I-int scaffold_1975 . biological_region 611 615 0.999 - . logic_name=eponine scaffold_1975 . biological_region 714 717 0.999 - . logic_name=eponine scaffold_1975 . biological_region 766 768 0.999 - . logic_name=eponine scaffold_1975 . repeat_region 1086 1938 . ? . description=dust scaffold_1975 . biological_region 2340 2343 0.999 - . logic_name=eponine scaffold_1975 ensembl protein_coding_gene 10 364 . - . ID=Phyra87431;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1975000001;logic_name=jgi_phyra1 scaffold_1975 ensembl transcript 10 364 . - . ID=Phyra87431;Parent=Phyra87431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1975 . CDS 10 364 . - 0 ID=Phyra87431;Parent=Phyra87431;rank=1 scaffold_1975 . exon 10 364 . - . ID=Phyra87431.1;Parent=Phyra87431;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1981 1 3626 scaffold_1981 . repeat_region 209 251 . ? . description=trf scaffold_1981 . repeat_region 568 610 . ? . description=trf scaffold_1981 . repeat_region 639 681 . ? . description=trf scaffold_1981 . repeat_region 843 1709 . ? . description=dust scaffold_1981 . biological_region 2093 2094 0.999 - . logic_name=eponine scaffold_1981 . biological_region 2276 2280 0.999 - . logic_name=eponine scaffold_1981 . repeat_region 2958 2971 . ? . description=dust scaffold_1981 . biological_region 3149 3150 0.999 + . logic_name=eponine scaffold_1981 . repeat_region 3224 3502 . - . description=GypsyPi-1c_I-int scaffold_1981 ensembl protein_coding_gene 1745 3207 . + . ID=Phyra87434;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1981000001;logic_name=jgi_phyra1 scaffold_1981 ensembl transcript 1745 3207 . + . ID=Phyra87434;Parent=Phyra87434;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1981 . CDS 1745 2495 . + 0 ID=Phyra87434;Parent=Phyra87434;rank=1 scaffold_1981 . exon 1745 2495 . + . ID=Phyra87434.1;Parent=Phyra87434;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1981 . CDS 2582 3207 . + 0 ID=Phyra87434;Parent=Phyra87434;rank=2 scaffold_1981 . exon 2582 3207 . + . ID=Phyra87434.2;Parent=Phyra87434;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1901 1 3627 scaffold_1901 . repeat_region 2896 2904 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2110 1 3628 scaffold_2110 . repeat_region 1184 2476 . ? . description=dust scaffold_2110 ensembl protein_coding_gene 90 1007 . - . ID=Phyra87521;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2110000001;logic_name=jgi_phyra1 scaffold_2110 ensembl transcript 90 1007 . - . ID=Phyra87521;Parent=Phyra87521;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2110 . CDS 90 1007 . - 0 ID=Phyra87521;Parent=Phyra87521;rank=1 scaffold_2110 . exon 90 1007 . - . ID=Phyra87521.1;Parent=Phyra87521;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2013 1 3630 scaffold_2013 . repeat_region 779 2088 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2054 1 3630 scaffold_2054 . repeat_region 1052 2497 . ? . description=dust scaffold_2054 . biological_region 3456 3461 0.999 - . logic_name=eponine scaffold_2054 . biological_region 3551 3551 0.999 + . logic_name=eponine scaffold_2054 ensembl protein_coding_gene 110 369 . + . ID=Phyra44265;biotype=protein_coding;external_name=gwEuk.2054.1.1;logic_name=jgi_phyra1 scaffold_2054 ensembl transcript 110 369 . + . ID=Phyra44265;Parent=Phyra44265;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2054 . CDS 110 369 . + 0 ID=Phyra44265;Parent=Phyra44265;rank=1 scaffold_2054 . exon 110 369 . + . ID=Phyra44265.1;Parent=Phyra44265;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2054 ensembl protein_coding_gene 2981 3579 . + . ID=Phyra87484;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2054000001;logic_name=jgi_phyra1 scaffold_2054 ensembl transcript 2981 3579 . + . ID=Phyra87484;Parent=Phyra87484;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2054 . CDS 2981 3579 . + 0 ID=Phyra87484;Parent=Phyra87484;rank=1 scaffold_2054 . exon 2981 3579 . + . ID=Phyra87484.1;Parent=Phyra87484;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1971 1 3632 scaffold_1971 . repeat_region 260 328 . ? . description=trf scaffold_1971 . biological_region 350 352 0.999 - . logic_name=eponine scaffold_1971 . biological_region 1096 1099 0.999 - . logic_name=eponine scaffold_1971 . biological_region 1256 1258 0.999 + . logic_name=eponine scaffold_1971 . biological_region 1698 1699 0.999 + . logic_name=eponine scaffold_1971 . repeat_region 1793 2762 . ? . description=dust scaffold_1971 ensembl protein_coding_gene 25 1718 . - . ID=Phyra87429;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1971000001;logic_name=jgi_phyra1 scaffold_1971 ensembl transcript 25 1718 . - . ID=Phyra87429;Parent=Phyra87429;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1971 . CDS 25 691 . - 0 ID=Phyra87429;Parent=Phyra87429;rank=2 scaffold_1971 . exon 25 691 . - . ID=Phyra87429.2;Parent=Phyra87429;constitutive=1;ensembl_phase=2;rank=2 scaffold_1971 . CDS 805 1718 . - 0 ID=Phyra87429;Parent=Phyra87429;rank=1 scaffold_1971 . exon 805 1718 . - . ID=Phyra87429.1;Parent=Phyra87429;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1968 1 3633 scaffold_1968 . repeat_region 4 1261 . - . description=Polinton-1_PI scaffold_1968 . repeat_region 1262 2067 . ? . description=dust scaffold_1968 . repeat_region 2085 2743 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1970 1 3633 scaffold_1970 . repeat_region 1433 2387 . ? . description=dust scaffold_1970 . biological_region 2447 2450 0.999 - . logic_name=eponine scaffold_1970 . biological_region 2504 2508 0.999 + . logic_name=eponine scaffold_1970 . biological_region 3080 3084 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2098 1 3633 scaffold_2098 . repeat_region 887 894 . ? . description=dust scaffold_2098 . repeat_region 1082 2360 . ? . description=dust scaffold_2098 ensembl protein_coding_gene 2857 3453 . - . ID=Phyra72527;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2098000001;logic_name=jgi_phyra1 scaffold_2098 ensembl transcript 2857 3453 . - . ID=Phyra72527;Parent=Phyra72527;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2098 . CDS 2857 3453 . - 0 ID=Phyra72527;Parent=Phyra72527;rank=1 scaffold_2098 . exon 2857 3453 . - . ID=Phyra72527.1;Parent=Phyra72527;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1972 1 3634 scaffold_1972 . repeat_region 1148 1303 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1964 1 3638 scaffold_1964 . biological_region 190 197 0.999 - . logic_name=eponine scaffold_1964 . biological_region 282 284 0.999 - . logic_name=eponine scaffold_1964 . repeat_region 1275 2319 . ? . description=dust scaffold_1964 ensembl protein_coding_gene 30 479 . - . ID=Phyra87427;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1964000001;logic_name=jgi_phyra1 scaffold_1964 ensembl transcript 30 479 . - . ID=Phyra87427;Parent=Phyra87427;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1964 . CDS 30 367 . - 0 ID=Phyra87427;Parent=Phyra87427;rank=2 scaffold_1964 . exon 30 367 . - . ID=Phyra87427.2;Parent=Phyra87427;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1964 . CDS 438 479 . - 0 ID=Phyra87427;Parent=Phyra87427;rank=1 scaffold_1964 . exon 438 479 . - . ID=Phyra87427.1;Parent=Phyra87427;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2068 1 3640 scaffold_2068 . repeat_region 1263 2535 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1960 1 3642 scaffold_1960 . biological_region 530 535 0.999 + . logic_name=eponine scaffold_1960 . biological_region 1065 1068 0.999 + . logic_name=eponine scaffold_1960 . biological_region 1944 1946 0.999 + . logic_name=eponine scaffold_1960 . repeat_region 2307 2336 . ? . description=trf scaffold_1960 . biological_region 2766 2770 0.999 + . logic_name=eponine scaffold_1960 . biological_region 2923 2930 0.999 + . logic_name=eponine scaffold_1960 . repeat_region 2945 3007 . ? . description=dust scaffold_1960 . repeat_region 2947 2976 . ? . description=trf scaffold_1960 . biological_region 2998 3004 0.999 - . logic_name=eponine scaffold_1960 . biological_region 3035 3038 0.999 - . logic_name=eponine scaffold_1960 . biological_region 3261 3266 0.999 + . logic_name=eponine scaffold_1960 . repeat_region 3267 3327 . ? . description=dust scaffold_1960 . biological_region 3327 3329 0.999 - . logic_name=eponine scaffold_1960 . biological_region 3383 3386 0.999 + . logic_name=eponine scaffold_1960 . repeat_region 3399 3437 . ? . description=dust scaffold_1960 . biological_region 3408 3412 0.999 + . logic_name=eponine scaffold_1960 ensembl protein_coding_gene 35 3559 . - . ID=Phyra87424;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1960000001;logic_name=jgi_phyra1 scaffold_1960 ensembl transcript 35 3559 . - . ID=Phyra87424;Parent=Phyra87424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1960 . CDS 35 3559 . - 0 ID=Phyra87424;Parent=Phyra87424;rank=1 scaffold_1960 . exon 35 3559 . - . ID=Phyra87424.1;Parent=Phyra87424;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2060 1 3642 scaffold_2060 . repeat_region 1567 2668 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1962 1 3643 scaffold_1962 . repeat_region 1672 2606 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1961 1 3644 scaffold_1961 . biological_region 1696 1698 0.999 - . logic_name=eponine scaffold_1961 . repeat_region 2185 2424 . ? . description=dust scaffold_1961 ensembl protein_coding_gene 508 3045 . - . ID=Phyra87425;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1961000001;logic_name=jgi_phyra1 scaffold_1961 ensembl transcript 508 3045 . - . ID=Phyra87425;Parent=Phyra87425;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1961 . CDS 508 2129 . - 0 ID=Phyra87425;Parent=Phyra87425;rank=3 scaffold_1961 . exon 508 2129 . - . ID=Phyra87425.3;Parent=Phyra87425;constitutive=1;ensembl_phase=1;rank=3 scaffold_1961 . CDS 2469 2883 . - 0 ID=Phyra87425;Parent=Phyra87425;rank=2 scaffold_1961 . exon 2469 2883 . - . ID=Phyra87425.2;Parent=Phyra87425;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1961 . CDS 2974 3045 . - 0 ID=Phyra87425;Parent=Phyra87425;rank=1 scaffold_1961 . exon 2974 3045 . - . ID=Phyra87425.1;Parent=Phyra87425;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2301 1 3644 scaffold_2301 . biological_region 60 61 0.999 + . logic_name=eponine scaffold_2301 . repeat_region 135 409 . - . description=GypsyPi-1c_I-int scaffold_2301 . repeat_region 776 2327 . ? . description=dust scaffold_2301 . repeat_region 2341 3129 . - . description=GypsyPi-1c_I-int scaffold_2301 . biological_region 3598 3599 0.999 - . logic_name=eponine scaffold_2301 ensembl protein_coding_gene 317 3442 . - . ID=Phyra87641;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2301000001;logic_name=jgi_phyra1 scaffold_2301 ensembl transcript 317 3442 . - . ID=Phyra87641;Parent=Phyra87641;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2301 . CDS 317 569 . - 0 ID=Phyra87641;Parent=Phyra87641;rank=5 scaffold_2301 . exon 317 569 . - . ID=Phyra87641.5;Parent=Phyra87641;constitutive=1;ensembl_phase=2;rank=5 scaffold_2301 . CDS 2345 2385 . - 0 ID=Phyra87641;Parent=Phyra87641;rank=4 scaffold_2301 . exon 2345 2385 . - . ID=Phyra87641.4;Parent=Phyra87641;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2301 . CDS 2449 2608 . - 0 ID=Phyra87641;Parent=Phyra87641;rank=3 scaffold_2301 . exon 2449 2608 . - . ID=Phyra87641.3;Parent=Phyra87641;constitutive=1;ensembl_phase=2;rank=3 scaffold_2301 . CDS 2681 2946 . - 0 ID=Phyra87641;Parent=Phyra87641;rank=2 scaffold_2301 . exon 2681 2946 . - . ID=Phyra87641.2;Parent=Phyra87641;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2301 . CDS 3182 3442 . - 0 ID=Phyra87641;Parent=Phyra87641;rank=1 scaffold_2301 . exon 3182 3442 . - . ID=Phyra87641.1;Parent=Phyra87641;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1955 1 3646 scaffold_1955 . biological_region 364 364 0.999 + . logic_name=eponine scaffold_1955 . repeat_region 439 675 . ? . description=trf scaffold_1955 . biological_region 880 885 0.999 - . logic_name=eponine scaffold_1955 . biological_region 931 931 0.999 - . logic_name=eponine scaffold_1955 . repeat_region 1396 2251 . ? . description=dust scaffold_1955 . biological_region 2727 2730 0.999 + . logic_name=eponine scaffold_1955 . repeat_region 2753 2775 . ? . description=trf scaffold_1955 . repeat_region 2947 3372 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1958 1 3647 scaffold_1958 . repeat_region 756 775 . ? . description=trf scaffold_1958 . repeat_region 756 775 . ? . description=dust scaffold_1958 . repeat_region 927 2010 . ? . description=dust scaffold_1958 . repeat_region 2619 2626 . ? . description=dust scaffold_1958 . repeat_region 3016 3077 . ? . description=trf scaffold_1958 . repeat_region 3016 3077 . ? . description=dust scaffold_1958 . repeat_region 3016 3077 . + . description=(GA)n ##gff-version 3 ##sequence-region scaffold_1969 1 3647 scaffold_1969 . repeat_region 1164 2131 . ? . description=dust scaffold_1969 . biological_region 3572 3575 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1959 1 3649 scaffold_1959 . repeat_region 1294 2315 . ? . description=dust scaffold_1959 . repeat_region 3479 3505 . ? . description=trf scaffold_1959 . biological_region 3633 3635 0.999 - . logic_name=eponine scaffold_1959 ensembl protein_coding_gene 265 1182 . - . ID=Phyra87423;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1959000001;logic_name=jgi_phyra1 scaffold_1959 ensembl transcript 265 1182 . - . ID=Phyra87423;Parent=Phyra87423;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1959 . CDS 265 600 . - 0 ID=Phyra87423;Parent=Phyra87423;rank=3 scaffold_1959 . exon 265 600 . - . ID=Phyra87423.3;Parent=Phyra87423;constitutive=1;rank=3 scaffold_1959 . CDS 633 888 . - 0 ID=Phyra87423;Parent=Phyra87423;rank=2 scaffold_1959 . exon 633 888 . - . ID=Phyra87423.2;Parent=Phyra87423;constitutive=1;ensembl_phase=2;rank=2 scaffold_1959 . CDS 956 1182 . - 0 ID=Phyra87423;Parent=Phyra87423;rank=1 scaffold_1959 . exon 956 1182 . - . ID=Phyra87423.1;Parent=Phyra87423;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2004 1 3649 scaffold_2004 . repeat_region 1826 1833 . ? . description=dust scaffold_2004 . repeat_region 3586 3625 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1956 1 3650 scaffold_1956 . repeat_region 866 2018 . ? . description=dust scaffold_1956 . repeat_region 2579 2587 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1948 1 3651 scaffold_1948 . repeat_region 1250 2537 . ? . description=dust scaffold_1948 . repeat_region 2538 3456 . ? . description=trf scaffold_1948 . repeat_region 2558 3405 . ? . description=trf scaffold_1948 . repeat_region 2568 3570 . ? . description=trf scaffold_1948 . repeat_region 2814 3595 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1953 1 3653 scaffold_1953 . repeat_region 1271 2783 . ? . description=dust scaffold_1953 . repeat_region 2798 2809 . ? . description=dust scaffold_1953 . biological_region 3444 3445 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1951 1 3654 scaffold_1951 . biological_region 957 960 0.999 - . logic_name=eponine scaffold_1951 . repeat_region 1375 2876 . ? . description=dust scaffold_1951 ensembl protein_coding_gene 2985 3629 . - . ID=Phyra72524;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1951000001;logic_name=jgi_phyra1 scaffold_1951 ensembl transcript 2985 3629 . - . ID=Phyra72524;Parent=Phyra72524;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1951 . CDS 2985 3629 . - 0 ID=Phyra72524;Parent=Phyra72524;rank=1 scaffold_1951 . exon 2985 3629 . - . ID=Phyra72524.1;Parent=Phyra72524;constitutive=1;rank=1 scaffold_1951 ensembl protein_coding_gene 7 1308 . - . ID=Phyra87419;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1951000001;logic_name=jgi_phyra1 scaffold_1951 ensembl transcript 7 1308 . - . ID=Phyra87419;Parent=Phyra87419;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1951 . CDS 7 1308 . - 0 ID=Phyra87419;Parent=Phyra87419;rank=1 scaffold_1951 . exon 7 1308 . - . ID=Phyra87419.1;Parent=Phyra87419;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1952 1 3655 scaffold_1952 . repeat_region 1087 2130 . ? . description=dust scaffold_1952 . repeat_region 3189 3230 . ? . description=trf scaffold_1952 ensembl protein_coding_gene 3342 3566 . - . ID=Phyra43722;biotype=protein_coding;external_name=gwEuk.1952.7.1;logic_name=jgi_phyra1 scaffold_1952 ensembl transcript 3342 3566 . - . ID=Phyra43722;Parent=Phyra43722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1952 . CDS 3342 3566 . - 0 ID=Phyra43722;Parent=Phyra43722;rank=1 scaffold_1952 . exon 3342 3566 . - . ID=Phyra43722.1;Parent=Phyra43722;constitutive=1;rank=1 scaffold_1952 ensembl protein_coding_gene 51 2916 . + . ID=Phyra87421;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1952000001;logic_name=jgi_phyra1 scaffold_1952 ensembl transcript 51 2916 . + . ID=Phyra87421;Parent=Phyra87421;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1952 . CDS 51 557 . + 0 ID=Phyra87421;Parent=Phyra87421;rank=1 scaffold_1952 . exon 51 557 . + . ID=Phyra87421.1;Parent=Phyra87421;constitutive=1;rank=1 scaffold_1952 . CDS 602 1030 . + 0 ID=Phyra87421;Parent=Phyra87421;rank=2 scaffold_1952 . exon 602 1030 . + . ID=Phyra87421.2;Parent=Phyra87421;constitutive=1;rank=2 scaffold_1952 . CDS 2137 2916 . + 0 ID=Phyra87421;Parent=Phyra87421;rank=3 scaffold_1952 . exon 2137 2916 . + . ID=Phyra87421.3;Parent=Phyra87421;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1946 1 3657 scaffold_1946 . repeat_region 1217 2412 . ? . description=dust scaffold_1946 . biological_region 3418 3418 0.999 + . logic_name=eponine scaffold_1946 ensembl protein_coding_gene 524 984 . - . ID=Phyra87418;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1946000001;logic_name=jgi_phyra1 scaffold_1946 ensembl transcript 524 984 . - . ID=Phyra87418;Parent=Phyra87418;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1946 . CDS 524 653 . - 0 ID=Phyra87418;Parent=Phyra87418;rank=2 scaffold_1946 . exon 524 653 . - . ID=Phyra87418.2;Parent=Phyra87418;constitutive=1;ensembl_phase=2;rank=2 scaffold_1946 . CDS 722 984 . - 0 ID=Phyra87418;Parent=Phyra87418;rank=1 scaffold_1946 . exon 722 984 . - . ID=Phyra87418.1;Parent=Phyra87418;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1947 1 3657 scaffold_1947 . repeat_region 667 977 . + . description=GypsyPi-1c_I-int scaffold_1947 . repeat_region 1287 2456 . ? . description=dust scaffold_1947 . repeat_region 2500 2778 . + . description=GypsyPi-1c_I-int scaffold_1947 . repeat_region 3182 3237 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1949 1 3657 scaffold_1949 . repeat_region 715 722 . ? . description=dust scaffold_1949 . repeat_region 1291 2377 . ? . description=dust scaffold_1949 . biological_region 2757 2762 0.999 - . logic_name=eponine scaffold_1949 . biological_region 2944 2945 0.999 - . logic_name=eponine scaffold_1949 . repeat_region 3635 3657 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2045 1 3657 scaffold_2045 . biological_region 425 425 0.999 + . logic_name=eponine scaffold_2045 . repeat_region 1293 2711 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2008 1 3658 scaffold_2008 . repeat_region 293 731 . - . description=GypsyPi-1c_I-int scaffold_2008 . repeat_region 748 2378 . ? . description=dust scaffold_2008 . biological_region 2463 2463 0.999 + . logic_name=eponine scaffold_2008 . biological_region 2487 2492 0.999 - . logic_name=eponine scaffold_2008 . biological_region 2539 2543 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2086 1 3658 scaffold_2086 . repeat_region 863 2038 . ? . description=dust scaffold_2086 ensembl protein_coding_gene 2292 3584 . - . ID=Phyra87506;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2086000001;logic_name=jgi_phyra1 scaffold_2086 ensembl transcript 2292 3584 . - . ID=Phyra87506;Parent=Phyra87506;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2086 . CDS 2292 3584 . - 0 ID=Phyra87506;Parent=Phyra87506;rank=1 scaffold_2086 . exon 2292 3584 . - . ID=Phyra87506.1;Parent=Phyra87506;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1943 1 3659 scaffold_1943 . repeat_region 1487 2339 . ? . description=dust scaffold_1943 . repeat_region 2865 2890 . ? . description=trf scaffold_1943 . repeat_region 2865 2890 . ? . description=dust scaffold_1943 ensembl protein_coding_gene 64 915 . - . ID=Phyra87414;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1943000001;logic_name=jgi_phyra1 scaffold_1943 ensembl transcript 64 915 . - . ID=Phyra87414;Parent=Phyra87414;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1943 . CDS 64 915 . - 0 ID=Phyra87414;Parent=Phyra87414;rank=1 scaffold_1943 . exon 64 915 . - . ID=Phyra87414.1;Parent=Phyra87414;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1941 1 3662 scaffold_1941 . biological_region 1228 1232 0.999 - . logic_name=eponine scaffold_1941 . repeat_region 1299 2560 . ? . description=dust scaffold_1941 ensembl protein_coding_gene 208 955 . + . ID=Phyra43675;biotype=protein_coding;external_name=gwEuk.1941.4.1;logic_name=jgi_phyra1 scaffold_1941 ensembl transcript 208 955 . + . ID=Phyra43675;Parent=Phyra43675;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1941 . CDS 208 762 . + 0 ID=Phyra43675;Parent=Phyra43675;rank=1 scaffold_1941 . exon 208 762 . + . ID=Phyra43675.1;Parent=Phyra43675;constitutive=1;rank=1 scaffold_1941 . CDS 827 955 . + 0 ID=Phyra43675;Parent=Phyra43675;rank=2 scaffold_1941 . exon 827 955 . + . ID=Phyra43675.2;Parent=Phyra43675;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1938 1 3663 scaffold_1938 . repeat_region 1473 2532 . ? . description=dust scaffold_1938 . repeat_region 2959 2991 . ? . description=trf scaffold_1938 . repeat_region 3014 3069 . ? . description=dust scaffold_1938 . repeat_region 3022 3060 . ? . description=trf scaffold_1938 ensembl protein_coding_gene 2950 3660 . - . ID=Phyra43661;biotype=protein_coding;external_name=gwEuk.1938.1.1;logic_name=jgi_phyra1 scaffold_1938 ensembl transcript 2950 3660 . - . ID=Phyra43661;Parent=Phyra43661;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1938 . CDS 2950 3660 . - 0 ID=Phyra43661;Parent=Phyra43661;rank=1 scaffold_1938 . exon 2950 3660 . - . ID=Phyra43661.1;Parent=Phyra43661;constitutive=1;rank=1 scaffold_1938 ensembl protein_coding_gene 834 1349 . + . ID=Phyra87408;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1938000001;logic_name=jgi_phyra1 scaffold_1938 ensembl transcript 834 1349 . + . ID=Phyra87408;Parent=Phyra87408;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1938 . CDS 834 1349 . + 0 ID=Phyra87408;Parent=Phyra87408;rank=1 scaffold_1938 . exon 834 1349 . + . ID=Phyra87408.1;Parent=Phyra87408;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1989 1 3663 scaffold_1989 . repeat_region 200 228 . ? . description=trf scaffold_1989 . repeat_region 200 228 . ? . description=dust scaffold_1989 . repeat_region 1059 2712 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1940 1 3664 scaffold_1940 . repeat_region 913 981 . ? . description=trf scaffold_1940 . biological_region 1420 1422 0.999 - . logic_name=eponine scaffold_1940 ensembl protein_coding_gene 142 1812 . - . ID=Phyra87411;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1940000001;logic_name=jgi_phyra1 scaffold_1940 ensembl transcript 142 1812 . - . ID=Phyra87411;Parent=Phyra87411;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1940 . CDS 142 1812 . - 0 ID=Phyra87411;Parent=Phyra87411;rank=1 scaffold_1940 . exon 142 1812 . - . ID=Phyra87411.1;Parent=Phyra87411;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1602 1 3665 scaffold_1602 ensembl protein_coding_gene 799 1833 . + . ID=Phyra87137;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1602000001;logic_name=jgi_phyra1 scaffold_1602 ensembl transcript 799 1833 . + . ID=Phyra87137;Parent=Phyra87137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1602 . CDS 799 1833 . + 0 ID=Phyra87137;Parent=Phyra87137;rank=1 scaffold_1602 . exon 799 1833 . + . ID=Phyra87137.1;Parent=Phyra87137;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1937 1 3667 scaffold_1937 . repeat_region 1223 2673 . ? . description=dust scaffold_1937 . biological_region 3232 3233 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1950 1 3667 scaffold_1950 . repeat_region 39 47 . ? . description=dust scaffold_1950 . repeat_region 387 394 . ? . description=dust scaffold_1950 . repeat_region 1378 2204 . ? . description=dust scaffold_1950 . repeat_region 2799 2810 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2136 1 3667 scaffold_2136 . repeat_region 149 167 . ? . description=dust scaffold_2136 . repeat_region 1449 2693 . ? . description=dust scaffold_2136 ensembl protein_coding_gene 539 1249 . + . ID=Phyra72531;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2136000001;logic_name=jgi_phyra1 scaffold_2136 ensembl transcript 539 1249 . + . ID=Phyra72531;Parent=Phyra72531;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2136 . CDS 539 1249 . + 0 ID=Phyra72531;Parent=Phyra72531;rank=1 scaffold_2136 . exon 539 1249 . + . ID=Phyra72531.1;Parent=Phyra72531;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1933 1 3669 scaffold_1933 . repeat_region 18 144 . ? . description=trf scaffold_1933 . repeat_region 28 150 . ? . description=trf scaffold_1933 . biological_region 1188 1191 0.999 + . logic_name=eponine scaffold_1933 . repeat_region 1489 2620 . ? . description=dust scaffold_1933 ensembl protein_coding_gene 634 1394 . - . ID=Phyra87403;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1933000001;logic_name=jgi_phyra1 scaffold_1933 ensembl transcript 634 1394 . - . ID=Phyra87403;Parent=Phyra87403;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1933 . CDS 634 940 . - 0 ID=Phyra87403;Parent=Phyra87403;rank=2 scaffold_1933 . exon 634 940 . - . ID=Phyra87403.2;Parent=Phyra87403;constitutive=1;ensembl_phase=2;rank=2 scaffold_1933 . CDS 1144 1394 . - 0 ID=Phyra87403;Parent=Phyra87403;rank=1 scaffold_1933 . exon 1144 1394 . - . ID=Phyra87403.1;Parent=Phyra87403;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1936 1 3669 scaffold_1936 . biological_region 613 614 0.999 + . logic_name=eponine scaffold_1936 . repeat_region 886 907 . ? . description=trf scaffold_1936 . repeat_region 1168 2354 . ? . description=dust scaffold_1936 . repeat_region 2370 2412 . ? . description=trf scaffold_1936 . repeat_region 2511 2557 . ? . description=trf scaffold_1936 . biological_region 3390 3394 0.999 + . logic_name=eponine scaffold_1936 ensembl protein_coding_gene 67 3653 . + . ID=Phyra87407;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1936000001;logic_name=jgi_phyra1 scaffold_1936 ensembl transcript 67 3653 . + . ID=Phyra87407;Parent=Phyra87407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1936 . CDS 67 1160 . + 0 ID=Phyra87407;Parent=Phyra87407;rank=1 scaffold_1936 . exon 67 1160 . + . ID=Phyra87407.1;Parent=Phyra87407;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1936 . CDS 2635 3653 . + 0 ID=Phyra87407;Parent=Phyra87407;rank=2 scaffold_1936 . exon 2635 3653 . + . ID=Phyra87407.2;Parent=Phyra87407;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1930 1 3671 scaffold_1930 . repeat_region 1 912 . + . description=GypsyPi-1c_I-int scaffold_1930 . biological_region 578 583 0.999 + . logic_name=eponine scaffold_1930 . repeat_region 1083 2481 . ? . description=dust scaffold_1930 . repeat_region 2545 2629 . + . description=GypsyPi-1c_I-int scaffold_1930 . repeat_region 2752 2821 . + . description=GypsyPi-1c_I-int scaffold_1930 ensembl protein_coding_gene 34 693 . + . ID=Phyra87401;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1930000001;logic_name=jgi_phyra1 scaffold_1930 ensembl transcript 34 693 . + . ID=Phyra87401;Parent=Phyra87401;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1930 . CDS 34 693 . + 0 ID=Phyra87401;Parent=Phyra87401;rank=1 scaffold_1930 . exon 34 693 . + . ID=Phyra87401.1;Parent=Phyra87401;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1939 1 3674 scaffold_1939 . repeat_region 344 415 . ? . description=trf scaffold_1939 . repeat_region 801 873 . ? . description=trf scaffold_1939 . repeat_region 1124 2198 . ? . description=dust scaffold_1939 ensembl protein_coding_gene 2525 3646 . + . ID=Phyra87410;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1939000001;logic_name=jgi_phyra1 scaffold_1939 ensembl transcript 2525 3646 . + . ID=Phyra87410;Parent=Phyra87410;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1939 . CDS 2525 3646 . + 0 ID=Phyra87410;Parent=Phyra87410;rank=1 scaffold_1939 . exon 2525 3646 . + . ID=Phyra87410.1;Parent=Phyra87410;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1945 1 3674 scaffold_1945 . biological_region 294 298 0.999 - . logic_name=eponine scaffold_1945 . repeat_region 978 2250 . ? . description=dust scaffold_1945 . repeat_region 3360 3402 . ? . description=trf scaffold_1945 . repeat_region 3501 3547 . ? . description=trf scaffold_1945 ensembl protein_coding_gene 2587 3162 . - . ID=Phyra43687;biotype=protein_coding;external_name=gwEuk.1945.5.1;logic_name=jgi_phyra1 scaffold_1945 ensembl transcript 2587 3162 . - . ID=Phyra43687;Parent=Phyra43687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1945 . CDS 2587 3162 . - 0 ID=Phyra43687;Parent=Phyra43687;rank=1 scaffold_1945 . exon 2587 3162 . - . ID=Phyra43687.1;Parent=Phyra43687;constitutive=1;rank=1 scaffold_1945 ensembl protein_coding_gene 34 916 . - . ID=Phyra87416;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1945000001;logic_name=jgi_phyra1 scaffold_1945 ensembl transcript 34 916 . - . ID=Phyra87416;Parent=Phyra87416;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1945 . CDS 34 916 . - 0 ID=Phyra87416;Parent=Phyra87416;rank=1 scaffold_1945 . exon 34 916 . - . ID=Phyra87416.1;Parent=Phyra87416;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1935 1 3675 scaffold_1935 . repeat_region 207 215 . ? . description=dust scaffold_1935 . repeat_region 673 694 . ? . description=trf scaffold_1935 . repeat_region 1694 2528 . ? . description=dust scaffold_1935 . repeat_region 2905 2947 . ? . description=trf scaffold_1935 . repeat_region 3046 3092 . ? . description=trf scaffold_1935 ensembl protein_coding_gene 2555 2779 . + . ID=Phyra43653;biotype=protein_coding;external_name=gwEuk.1935.1.1;logic_name=jgi_phyra1 scaffold_1935 ensembl transcript 2555 2779 . + . ID=Phyra43653;Parent=Phyra43653;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1935 . CDS 2555 2779 . + 0 ID=Phyra43653;Parent=Phyra43653;rank=1 scaffold_1935 . exon 2555 2779 . + . ID=Phyra43653.1;Parent=Phyra43653;constitutive=1;rank=1 scaffold_1935 ensembl protein_coding_gene 406 1559 . + . ID=Phyra87405;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1935000001;logic_name=jgi_phyra1 scaffold_1935 ensembl transcript 406 1559 . + . ID=Phyra87405;Parent=Phyra87405;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1935 . CDS 406 1482 . + 0 ID=Phyra87405;Parent=Phyra87405;rank=1 scaffold_1935 . exon 406 1482 . + . ID=Phyra87405.1;Parent=Phyra87405;constitutive=1;rank=1 scaffold_1935 . CDS 1506 1559 . + 0 ID=Phyra87405;Parent=Phyra87405;rank=2 scaffold_1935 . exon 1506 1559 . + . ID=Phyra87405.2;Parent=Phyra87405;constitutive=1;rank=2 scaffold_1935 ensembl protein_coding_gene 3095 3634 . - . ID=Phyra87406;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1935000002;logic_name=jgi_phyra1 scaffold_1935 ensembl transcript 3095 3634 . - . ID=Phyra87406;Parent=Phyra87406;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1935 . CDS 3095 3128 . - 0 ID=Phyra87406;Parent=Phyra87406;rank=2 scaffold_1935 . exon 3095 3128 . - . ID=Phyra87406.2;Parent=Phyra87406;constitutive=1;ensembl_phase=2;rank=2 scaffold_1935 . CDS 3246 3634 . - 0 ID=Phyra87406;Parent=Phyra87406;rank=1 scaffold_1935 . exon 3246 3634 . - . ID=Phyra87406.1;Parent=Phyra87406;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_2073 1 3675 scaffold_2073 . repeat_region 422 544 . - . description=GypsyPi-1c_LTR scaffold_2073 . biological_region 982 989 0.999 + . logic_name=eponine scaffold_2073 . biological_region 1000 1002 0.999 - . logic_name=eponine scaffold_2073 . repeat_region 1540 2567 . ? . description=dust scaffold_2073 ensembl protein_coding_gene 2678 3595 . + . ID=Phyra87497;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2073000001;logic_name=jgi_phyra1 scaffold_2073 ensembl transcript 2678 3595 . + . ID=Phyra87497;Parent=Phyra87497;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2073 . CDS 2678 2824 . + 0 ID=Phyra87497;Parent=Phyra87497;rank=1 scaffold_2073 . exon 2678 2824 . + . ID=Phyra87497.1;Parent=Phyra87497;constitutive=1;rank=1 scaffold_2073 . CDS 2869 3595 . + 0 ID=Phyra87497;Parent=Phyra87497;rank=2 scaffold_2073 . exon 2869 3595 . + . ID=Phyra87497.2;Parent=Phyra87497;constitutive=1;ensembl_end_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1931 1 3676 scaffold_1931 . repeat_region 1455 2751 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1932 1 3676 scaffold_1932 . repeat_region 962 992 . ? . description=trf scaffold_1932 . biological_region 1105 1107 0.999 - . logic_name=eponine scaffold_1932 . repeat_region 1315 2577 . ? . description=dust scaffold_1932 ensembl protein_coding_gene 62 3291 . + . ID=Phyra87402;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1932000001;logic_name=jgi_phyra1 scaffold_1932 ensembl transcript 62 3291 . + . ID=Phyra87402;Parent=Phyra87402;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1932 . CDS 62 1303 . + 0 ID=Phyra87402;Parent=Phyra87402;rank=1 scaffold_1932 . exon 62 1303 . + . ID=Phyra87402.1;Parent=Phyra87402;constitutive=1;rank=1 scaffold_1932 . CDS 2584 3291 . + 0 ID=Phyra87402;Parent=Phyra87402;rank=2 scaffold_1932 . exon 2584 3291 . + . ID=Phyra87402.2;Parent=Phyra87402;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1977 1 3678 scaffold_1977 . repeat_region 622 719 . ? . description=trf scaffold_1977 . repeat_region 897 2049 . ? . description=dust scaffold_1977 . repeat_region 3054 3081 . ? . description=trf scaffold_1977 . repeat_region 3054 3085 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1876 1 3679 scaffold_1876 . biological_region 2127 2129 0.999 + . logic_name=eponine scaffold_1876 . biological_region 2803 2809 0.999 - . logic_name=eponine scaffold_1876 . biological_region 2970 2974 0.999 - . logic_name=eponine scaffold_1876 ensembl protein_coding_gene 1244 3503 . + . ID=Phyra87353;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1876000001;logic_name=jgi_phyra1 scaffold_1876 ensembl transcript 1244 3503 . + . ID=Phyra87353;Parent=Phyra87353;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1876 . CDS 1244 1349 . + 0 ID=Phyra87353;Parent=Phyra87353;rank=1 scaffold_1876 . exon 1244 1349 . + . ID=Phyra87353.1;Parent=Phyra87353;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1876 . CDS 1654 1891 . + 0 ID=Phyra87353;Parent=Phyra87353;rank=2 scaffold_1876 . exon 1654 1891 . + . ID=Phyra87353.2;Parent=Phyra87353;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1876 . CDS 1992 2688 . + 0 ID=Phyra87353;Parent=Phyra87353;rank=3 scaffold_1876 . exon 1992 2688 . + . ID=Phyra87353.3;Parent=Phyra87353;constitutive=1;ensembl_phase=2;rank=3 scaffold_1876 . CDS 2898 3503 . + 0 ID=Phyra87353;Parent=Phyra87353;rank=4 scaffold_1876 . exon 2898 3503 . + . ID=Phyra87353.4;Parent=Phyra87353;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_1926 1 3681 scaffold_1926 . repeat_region 767 808 . ? . description=trf scaffold_1926 . repeat_region 1482 2272 . ? . description=dust scaffold_1926 . biological_region 2641 2641 0.999 + . logic_name=eponine scaffold_1926 ensembl protein_coding_gene 36 596 . + . ID=Phyra87394;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1926000001;logic_name=jgi_phyra1 scaffold_1926 ensembl transcript 36 596 . + . ID=Phyra87394;Parent=Phyra87394;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1926 . CDS 36 596 . + 0 ID=Phyra87394;Parent=Phyra87394;rank=1 scaffold_1926 . exon 36 596 . + . ID=Phyra87394.1;Parent=Phyra87394;constitutive=1;rank=1 scaffold_1926 ensembl protein_coding_gene 902 3626 . - . ID=Phyra87395;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1926000002;logic_name=jgi_phyra1 scaffold_1926 ensembl transcript 902 3626 . - . ID=Phyra87395;Parent=Phyra87395;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1926 . CDS 902 1475 . - 0 ID=Phyra87395;Parent=Phyra87395;rank=2 scaffold_1926 . exon 902 1475 . - . ID=Phyra87395.2;Parent=Phyra87395;constitutive=1;ensembl_phase=2;rank=2 scaffold_1926 . CDS 2314 3626 . - 0 ID=Phyra87395;Parent=Phyra87395;rank=1 scaffold_1926 . exon 2314 3626 . - . ID=Phyra87395.1;Parent=Phyra87395;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1924 1 3685 scaffold_1924 . repeat_region 1337 1378 . ? . description=trf scaffold_1924 . repeat_region 2072 2664 . ? . description=dust scaffold_1924 . repeat_region 3356 3381 . ? . description=dust scaffold_1924 . biological_region 3616 3619 0.999 - . logic_name=eponine scaffold_1924 ensembl protein_coding_gene 1472 2055 . - . ID=Phyra87392;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1924000001;logic_name=jgi_phyra1 scaffold_1924 ensembl transcript 1472 2055 . - . ID=Phyra87392;Parent=Phyra87392;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1924 . CDS 1472 1635 . - 0 ID=Phyra87392;Parent=Phyra87392;rank=2 scaffold_1924 . exon 1472 1635 . - . ID=Phyra87392.2;Parent=Phyra87392;constitutive=1;ensembl_phase=1;rank=2 scaffold_1924 . CDS 1656 2055 . - 0 ID=Phyra87392;Parent=Phyra87392;rank=1 scaffold_1924 . exon 1656 2055 . - . ID=Phyra87392.1;Parent=Phyra87392;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1924 ensembl protein_coding_gene 3199 3510 . + . ID=Phyra87393;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1924000002;logic_name=jgi_phyra1 scaffold_1924 ensembl transcript 3199 3510 . + . ID=Phyra87393;Parent=Phyra87393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1924 . CDS 3199 3510 . + 0 ID=Phyra87393;Parent=Phyra87393;rank=1 scaffold_1924 . exon 3199 3510 . + . ID=Phyra87393.1;Parent=Phyra87393;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1923 1 3687 scaffold_1923 . repeat_region 550 815 . + . description=GypsyPi-1c_LTR scaffold_1923 . repeat_region 1074 2031 . ? . description=dust scaffold_1923 . repeat_region 2702 2711 . ? . description=dust scaffold_1923 . repeat_region 3568 3580 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1942 1 3687 scaffold_1942 . repeat_region 1037 1079 . ? . description=trf scaffold_1942 . repeat_region 1243 2325 . ? . description=dust scaffold_1942 . repeat_region 3421 3507 . ? . description=trf scaffold_1942 ensembl protein_coding_gene 2430 3289 . + . ID=Phyra87413;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1942000001;logic_name=jgi_phyra1 scaffold_1942 ensembl transcript 2430 3289 . + . ID=Phyra87413;Parent=Phyra87413;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1942 . CDS 2430 3232 . + 0 ID=Phyra87413;Parent=Phyra87413;rank=1 scaffold_1942 . exon 2430 3232 . + . ID=Phyra87413.1;Parent=Phyra87413;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1942 . CDS 3286 3289 . + 0 ID=Phyra87413;Parent=Phyra87413;rank=2 scaffold_1942 . exon 3286 3289 . + . ID=Phyra87413.2;Parent=Phyra87413;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1919 1 3688 scaffold_1919 . biological_region 297 302 0.999 + . logic_name=eponine scaffold_1919 . repeat_region 556 570 . ? . description=dust scaffold_1919 . repeat_region 771 818 . ? . description=trf scaffold_1919 . biological_region 3159 3162 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1922 1 3688 scaffold_1922 . biological_region 116 117 0.999 + . logic_name=eponine scaffold_1922 . repeat_region 811 864 . ? . description=trf scaffold_1922 . repeat_region 1574 2112 . ? . description=dust scaffold_1922 ensembl protein_coding_gene 21 2618 . + . ID=Phyra87391;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1922000001;logic_name=jgi_phyra1 scaffold_1922 ensembl transcript 21 2618 . + . ID=Phyra87391;Parent=Phyra87391;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1922 . CDS 21 426 . + 0 ID=Phyra87391;Parent=Phyra87391;rank=1 scaffold_1922 . exon 21 426 . + . ID=Phyra87391.1;Parent=Phyra87391;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1922 . CDS 678 1562 . + 0 ID=Phyra87391;Parent=Phyra87391;rank=2 scaffold_1922 . exon 678 1562 . + . ID=Phyra87391.2;Parent=Phyra87391;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1922 . CDS 2206 2618 . + 0 ID=Phyra87391;Parent=Phyra87391;rank=3 scaffold_1922 . exon 2206 2618 . + . ID=Phyra87391.3;Parent=Phyra87391;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1921 1 3689 scaffold_1921 . repeat_region 1491 2308 . ? . description=dust scaffold_1921 . repeat_region 3291 3332 . ? . description=trf scaffold_1921 ensembl pseudogene 3444 3667 . - . ID=Phyra43632;biotype=pseudogene;external_name=gwEuk.1921.1.1;logic_name=jgi_phyra1 scaffold_1921 ensembl pseudogene 3444 3667 . - . ID=Phyra43632;Parent=Phyra43632;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1921 . exon 3444 3667 . - . ID=Phyra43632.1;Parent=Phyra43632;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1920 1 3690 scaffold_1920 . repeat_region 969 976 . ? . description=dust scaffold_1920 . repeat_region 1376 2030 . ? . description=dust scaffold_1920 . biological_region 2641 2645 0.999 - . logic_name=eponine scaffold_1920 . repeat_region 3007 3022 . ? . description=dust scaffold_1920 ensembl protein_coding_gene 2093 2686 . + . ID=Phyra87390;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1920000001;logic_name=jgi_phyra1 scaffold_1920 ensembl transcript 2093 2686 . + . ID=Phyra87390;Parent=Phyra87390;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1920 . CDS 2093 2686 . + 0 ID=Phyra87390;Parent=Phyra87390;rank=1 scaffold_1920 . exon 2093 2686 . + . ID=Phyra87390.1;Parent=Phyra87390;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1918 1 3691 scaffold_1918 . biological_region 63 65 0.999 + . logic_name=eponine scaffold_1918 . biological_region 282 285 0.999 + . logic_name=eponine scaffold_1918 . repeat_region 1332 1985 . ? . description=dust scaffold_1918 . repeat_region 3682 3690 . ? . description=dust scaffold_1918 ensembl protein_coding_gene 10 598 . - . ID=Phyra87389;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1918000001;logic_name=jgi_phyra1 scaffold_1918 ensembl transcript 10 598 . - . ID=Phyra87389;Parent=Phyra87389;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1918 . CDS 10 598 . - 0 ID=Phyra87389;Parent=Phyra87389;rank=1 scaffold_1918 . exon 10 598 . - . ID=Phyra87389.1;Parent=Phyra87389;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1913 1 3692 ##gff-version 3 ##sequence-region scaffold_1916 1 3692 scaffold_1916 . repeat_region 1361 2615 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1914 1 3693 scaffold_1914 . biological_region 477 478 0.999 - . logic_name=eponine scaffold_1914 . biological_region 607 607 0.999 - . logic_name=eponine scaffold_1914 . biological_region 717 719 0.999 + . logic_name=eponine scaffold_1914 . biological_region 803 808 0.999 - . logic_name=eponine scaffold_1914 . biological_region 825 831 0.999 - . logic_name=eponine scaffold_1914 . biological_region 861 866 0.999 - . logic_name=eponine scaffold_1914 . biological_region 1528 1529 0.999 - . logic_name=eponine scaffold_1914 . repeat_region 3430 3469 . ? . description=trf scaffold_1914 ensembl protein_coding_gene 2028 2495 . - . ID=Phyra87386;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1914000001;logic_name=jgi_phyra1 scaffold_1914 ensembl transcript 2028 2495 . - . ID=Phyra87386;Parent=Phyra87386;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1914 . CDS 2028 2495 . - 0 ID=Phyra87386;Parent=Phyra87386;rank=1 scaffold_1914 . exon 2028 2495 . - . ID=Phyra87386.1;Parent=Phyra87386;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1915 1 3693 scaffold_1915 . repeat_region 1341 2142 . ? . description=dust scaffold_1915 ensembl protein_coding_gene 1055 3690 . + . ID=Phyra87387;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1915000001;logic_name=jgi_phyra1 scaffold_1915 ensembl transcript 1055 3690 . + . ID=Phyra87387;Parent=Phyra87387;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1915 . CDS 1055 1068 . + 0 ID=Phyra87387;Parent=Phyra87387;rank=1 scaffold_1915 . exon 1055 1068 . + . ID=Phyra87387.1;Parent=Phyra87387;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1915 . CDS 2193 3690 . + 0 ID=Phyra87387;Parent=Phyra87387;rank=2 scaffold_1915 . exon 2193 3690 . + . ID=Phyra87387.2;Parent=Phyra87387;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1917 1 3693 scaffold_1917 . repeat_region 2409 2418 . ? . description=dust scaffold_1917 . repeat_region 2526 2659 . - . description=Polinton-1_PI scaffold_1917 . repeat_region 2664 2943 . - . description=Polinton-1_PI scaffold_1917 ensembl protein_coding_gene 42 734 . + . ID=Phyra87388;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1917000001;logic_name=jgi_phyra1 scaffold_1917 ensembl transcript 42 734 . + . ID=Phyra87388;Parent=Phyra87388;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1917 . CDS 42 734 . + 0 ID=Phyra87388;Parent=Phyra87388;rank=1 scaffold_1917 . exon 42 734 . + . ID=Phyra87388.1;Parent=Phyra87388;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1912 1 3695 scaffold_1912 . repeat_region 1709 2672 . ? . description=dust scaffold_1912 ensembl protein_coding_gene 28 509 . - . ID=Phyra87385;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1912000001;logic_name=jgi_phyra1 scaffold_1912 ensembl transcript 28 509 . - . ID=Phyra87385;Parent=Phyra87385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1912 . CDS 28 509 . - 0 ID=Phyra87385;Parent=Phyra87385;rank=1 scaffold_1912 . exon 28 509 . - . ID=Phyra87385.1;Parent=Phyra87385;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1999 1 3695 scaffold_1999 . repeat_region 1578 2515 . ? . description=dust scaffold_1999 ensembl protein_coding_gene 2681 3253 . + . ID=Phyra87448;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1999000001;logic_name=jgi_phyra1 scaffold_1999 ensembl transcript 2681 3253 . + . ID=Phyra87448;Parent=Phyra87448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1999 . CDS 2681 3253 . + 0 ID=Phyra87448;Parent=Phyra87448;rank=1 scaffold_1999 . exon 2681 3253 . + . ID=Phyra87448.1;Parent=Phyra87448;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1906 1 3697 scaffold_1906 . repeat_region 1542 2565 . ? . description=dust scaffold_1906 . biological_region 3365 3366 0.999 + . logic_name=eponine scaffold_1906 . biological_region 3421 3424 0.999 + . logic_name=eponine scaffold_1906 . repeat_region 3440 3661 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1909 1 3697 scaffold_1909 . repeat_region 1288 2034 . ? . description=dust scaffold_1909 ensembl protein_coding_gene 41 537 . + . ID=Phyra87381;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1909000001;logic_name=jgi_phyra1 scaffold_1909 ensembl transcript 41 537 . + . ID=Phyra87381;Parent=Phyra87381;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1909 . exon 41 537 . + . ID=Phyra87381.1;Parent=Phyra87381;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1909 . CDS 43 537 . + 0 ID=Phyra87381;Parent=Phyra87381;rank=1 scaffold_1909 ensembl protein_coding_gene 2136 2594 . + . ID=Phyra87382;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1909000002;logic_name=jgi_phyra1 scaffold_1909 ensembl transcript 2136 2594 . + . ID=Phyra87382;Parent=Phyra87382;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1909 . CDS 2136 2594 . + 0 ID=Phyra87382;Parent=Phyra87382;rank=1 scaffold_1909 . exon 2136 2594 . + . ID=Phyra87382.1;Parent=Phyra87382;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2041 1 3697 scaffold_2041 . repeat_region 1080 2386 . ? . description=dust scaffold_2041 . biological_region 2620 2620 0.999 + . logic_name=eponine scaffold_2041 . biological_region 3543 3547 0.999 - . logic_name=eponine scaffold_2041 ensembl protein_coding_gene 2572 3693 . + . ID=Phyra87477;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2041000001;logic_name=jgi_phyra1 scaffold_2041 ensembl transcript 2572 3693 . + . ID=Phyra87477;Parent=Phyra87477;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2041 . CDS 2572 3693 . + 0 ID=Phyra87477;Parent=Phyra87477;rank=1 scaffold_2041 . exon 2572 3693 . + . ID=Phyra87477.1;Parent=Phyra87477;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1907 1 3698 scaffold_1907 . repeat_region 185 227 . ? . description=trf scaffold_1907 . repeat_region 326 372 . ? . description=trf scaffold_1907 . repeat_region 557 578 . ? . description=trf scaffold_1907 . repeat_region 1102 2227 . ? . description=dust scaffold_1907 . repeat_region 2677 2719 . ? . description=trf scaffold_1907 . repeat_region 2748 2788 . ? . description=trf scaffold_1907 . repeat_region 2831 2877 . ? . description=trf scaffold_1907 . biological_region 3328 3332 0.999 - . logic_name=eponine scaffold_1907 ensembl protein_coding_gene 2228 2551 . + . ID=Phyra43622;biotype=protein_coding;external_name=gwEuk.1907.4.1;logic_name=jgi_phyra1 scaffold_1907 ensembl transcript 2228 2551 . + . ID=Phyra43622;Parent=Phyra43622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1907 . CDS 2228 2551 . + 0 ID=Phyra43622;Parent=Phyra43622;rank=1 scaffold_1907 . exon 2228 2551 . + . ID=Phyra43622.1;Parent=Phyra43622;constitutive=1;rank=1 scaffold_1907 ensembl protein_coding_gene 860 1081 . + . ID=Phyra43624;biotype=protein_coding;external_name=gwEuk.1907.6.1;logic_name=jgi_phyra1 scaffold_1907 ensembl transcript 860 1081 . + . ID=Phyra43624;Parent=Phyra43624;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1907 . CDS 860 1081 . + 0 ID=Phyra43624;Parent=Phyra43624;rank=1 scaffold_1907 . exon 860 1081 . + . ID=Phyra43624.1;Parent=Phyra43624;constitutive=1;rank=1 scaffold_1907 ensembl protein_coding_gene 281 849 . + . ID=Phyra87377;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1907000001;logic_name=jgi_phyra1 scaffold_1907 ensembl transcript 281 849 . + . ID=Phyra87377;Parent=Phyra87377;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1907 . CDS 281 330 . + 0 ID=Phyra87377;Parent=Phyra87377;rank=1 scaffold_1907 . exon 281 330 . + . ID=Phyra87377.1;Parent=Phyra87377;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1907 . CDS 466 669 . + 0 ID=Phyra87377;Parent=Phyra87377;rank=2 scaffold_1907 . exon 466 669 . + . ID=Phyra87377.2;Parent=Phyra87377;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1907 . CDS 765 849 . + 0 ID=Phyra87377;Parent=Phyra87377;rank=3 scaffold_1907 . exon 765 849 . + . ID=Phyra87377.3;Parent=Phyra87377;constitutive=1;ensembl_phase=2;rank=3 scaffold_1907 ensembl protein_coding_gene 2662 3680 . - . ID=Phyra87378;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1907000002;logic_name=jgi_phyra1 scaffold_1907 ensembl transcript 2662 3680 . - . ID=Phyra87378;Parent=Phyra87378;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1907 . CDS 2662 2704 . - 0 ID=Phyra87378;Parent=Phyra87378;rank=2 scaffold_1907 . exon 2662 2704 . - . ID=Phyra87378.2;Parent=Phyra87378;constitutive=1;ensembl_phase=2;rank=2 scaffold_1907 . CDS 3031 3680 . - 0 ID=Phyra87378;Parent=Phyra87378;rank=1 scaffold_1907 . exon 3031 3680 . - . ID=Phyra87378.1;Parent=Phyra87378;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1908 1 3698 scaffold_1908 . repeat_region 187 314 . + . description=(CAG)n scaffold_1908 . repeat_region 1048 2685 . ? . description=dust scaffold_1908 ensembl protein_coding_gene 150 476 . + . ID=Phyra87379;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1908000001;logic_name=jgi_phyra1 scaffold_1908 ensembl transcript 150 476 . + . ID=Phyra87379;Parent=Phyra87379;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1908 . CDS 150 476 . + 0 ID=Phyra87379;Parent=Phyra87379;rank=1 scaffold_1908 . exon 150 476 . + . ID=Phyra87379.1;Parent=Phyra87379;constitutive=1;rank=1 scaffold_1908 ensembl protein_coding_gene 3125 3647 . - . ID=Phyra87380;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1908000002;logic_name=jgi_phyra1 scaffold_1908 ensembl transcript 3125 3647 . - . ID=Phyra87380;Parent=Phyra87380;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1908 . CDS 3125 3646 . - 0 ID=Phyra87380;Parent=Phyra87380;rank=1 scaffold_1908 . exon 3125 3647 . - . ID=Phyra87380.1;Parent=Phyra87380;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1911 1 3698 scaffold_1911 . repeat_region 1843 2813 . ? . description=dust scaffold_1911 ensembl protein_coding_gene 95 3452 . + . ID=Phyra87384;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1911000001;logic_name=jgi_phyra1 scaffold_1911 ensembl transcript 95 3452 . + . ID=Phyra87384;Parent=Phyra87384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1911 . CDS 95 1218 . + 0 ID=Phyra87384;Parent=Phyra87384;rank=1 scaffold_1911 . exon 95 1218 . + . ID=Phyra87384.1;Parent=Phyra87384;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1911 . CDS 1515 1813 . + 0 ID=Phyra87384;Parent=Phyra87384;rank=2 scaffold_1911 . exon 1515 1813 . + . ID=Phyra87384.2;Parent=Phyra87384;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1911 . CDS 2890 3452 . + 0 ID=Phyra87384;Parent=Phyra87384;rank=3 scaffold_1911 . exon 2890 3452 . + . ID=Phyra87384.3;Parent=Phyra87384;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1904 1 3699 scaffold_1904 . repeat_region 413 432 . ? . description=trf scaffold_1904 . repeat_region 834 2195 . ? . description=dust scaffold_1904 . repeat_region 2541 2587 . ? . description=trf scaffold_1904 ensembl protein_coding_gene 22 3688 . + . ID=Phyra87375;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1904000001;logic_name=jgi_phyra1 scaffold_1904 ensembl transcript 22 3688 . + . ID=Phyra87375;Parent=Phyra87375;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1904 . CDS 22 817 . + 0 ID=Phyra87375;Parent=Phyra87375;rank=1 scaffold_1904 . exon 22 817 . + . ID=Phyra87375.1;Parent=Phyra87375;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1904 . CDS 2705 3688 . + 0 ID=Phyra87375;Parent=Phyra87375;rank=2 scaffold_1904 . exon 2705 3688 . + . ID=Phyra87375.2;Parent=Phyra87375;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1905 1 3699 scaffold_1905 . repeat_region 689 710 . ? . description=trf scaffold_1905 . repeat_region 1386 2316 . ? . description=dust scaffold_1905 . repeat_region 3045 3091 . ? . description=trf scaffold_1905 ensembl protein_coding_gene 1 3694 . + . ID=Phyra87376;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1905000001;logic_name=jgi_phyra1 scaffold_1905 ensembl transcript 1 3694 . + . ID=Phyra87376;Parent=Phyra87376;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1905 . exon 1 1383 . + . ID=Phyra87376.1;Parent=Phyra87376;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_1905 . CDS 2 1383 . + 0 ID=Phyra87376;Parent=Phyra87376;rank=1 scaffold_1905 . CDS 2365 2790 . + 0 ID=Phyra87376;Parent=Phyra87376;rank=2 scaffold_1905 . exon 2365 2790 . + . ID=Phyra87376.2;Parent=Phyra87376;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1905 . CDS 3189 3694 . + 0 ID=Phyra87376;Parent=Phyra87376;rank=3 scaffold_1905 . exon 3189 3694 . + . ID=Phyra87376.3;Parent=Phyra87376;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_1896 1 3702 scaffold_1896 . biological_region 266 273 0.999 + . logic_name=eponine scaffold_1896 . repeat_region 1182 2239 . ? . description=dust scaffold_1896 . repeat_region 2436 2878 . + . description=GypsyPi-1c_I-int scaffold_1896 . repeat_region 2962 3376 . + . description=GypsyPi-1c_I-int scaffold_1896 ensembl protein_coding_gene 117 854 . + . ID=Phyra87371;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1896000001;logic_name=jgi_phyra1 scaffold_1896 ensembl transcript 117 854 . + . ID=Phyra87371;Parent=Phyra87371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1896 . CDS 117 854 . + 0 ID=Phyra87371;Parent=Phyra87371;rank=1 scaffold_1896 . exon 117 854 . + . ID=Phyra87371.1;Parent=Phyra87371;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2056 1 3702 scaffold_2056 . repeat_region 1054 2171 . ? . description=dust scaffold_2056 . repeat_region 2372 2382 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1957 1 3703 scaffold_1957 . repeat_region 1392 2352 . ? . description=dust scaffold_1957 . biological_region 3310 3313 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1820 1 3704 scaffold_1820 . repeat_region 1529 2304 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1900 1 3704 scaffold_1900 . repeat_region 33 43 . ? . description=dust scaffold_1900 . biological_region 520 521 0.999 + . logic_name=eponine scaffold_1900 . biological_region 547 548 0.999 + . logic_name=eponine scaffold_1900 . biological_region 810 812 0.999 - . logic_name=eponine scaffold_1900 . biological_region 815 822 0.999 - . logic_name=eponine scaffold_1900 . repeat_region 1605 2331 . ? . description=dust scaffold_1900 . repeat_region 3035 3082 . ? . description=trf scaffold_1900 ensembl protein_coding_gene 209 2680 . + . ID=Phyra87373;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1900000001;logic_name=jgi_phyra1 scaffold_1900 ensembl transcript 209 2680 . + . ID=Phyra87373;Parent=Phyra87373;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1900 . CDS 209 258 . + 0 ID=Phyra87373;Parent=Phyra87373;rank=1 scaffold_1900 . exon 209 258 . + . ID=Phyra87373.1;Parent=Phyra87373;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1900 . CDS 293 1552 . + 0 ID=Phyra87373;Parent=Phyra87373;rank=2 scaffold_1900 . exon 293 1552 . + . ID=Phyra87373.2;Parent=Phyra87373;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1900 . CDS 2476 2680 . + 0 ID=Phyra87373;Parent=Phyra87373;rank=3 scaffold_1900 . exon 2476 2680 . + . ID=Phyra87373.3;Parent=Phyra87373;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_2108 1 3705 scaffold_2108 . repeat_region 749 807 . ? . description=trf scaffold_2108 . repeat_region 1529 2228 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1894 1 3706 scaffold_1894 . biological_region 79 83 0.999 + . logic_name=eponine scaffold_1894 . biological_region 130 136 0.999 + . logic_name=eponine scaffold_1894 . biological_region 232 237 0.999 + . logic_name=eponine scaffold_1894 . biological_region 287 289 0.999 + . logic_name=eponine scaffold_1894 . repeat_region 805 2101 . ? . description=dust scaffold_1894 . repeat_region 2142 2841 . + . description=GypsyPi-1c_I-int scaffold_1894 . repeat_region 3194 3415 . + . description=GypsyPi-1c_I-int scaffold_1894 . biological_region 3432 3435 0.999 - . logic_name=eponine scaffold_1894 . biological_region 3490 3491 0.999 - . logic_name=eponine scaffold_1894 ensembl pseudogene 2388 2761 . + . ID=Phyra43444;biotype=pseudogene;external_name=gwEuk.1894.1.1;logic_name=jgi_phyra1 scaffold_1894 ensembl pseudogene 2388 2761 . + . ID=Phyra43444;Parent=Phyra43444;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1894 . exon 2388 2761 . + . ID=Phyra43444.1;Parent=Phyra43444;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1893 1 3707 scaffold_1893 . repeat_region 767 809 . ? . description=trf scaffold_1893 . repeat_region 944 2354 . ? . description=dust scaffold_1893 . repeat_region 2458 2499 . ? . description=trf scaffold_1893 ensembl protein_coding_gene 115 594 . + . ID=Phyra87367;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1893000001;logic_name=jgi_phyra1 scaffold_1893 ensembl transcript 115 594 . + . ID=Phyra87367;Parent=Phyra87367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1893 . CDS 115 594 . + 0 ID=Phyra87367;Parent=Phyra87367;rank=1 scaffold_1893 . exon 115 594 . + . ID=Phyra87367.1;Parent=Phyra87367;constitutive=1;rank=1 scaffold_1893 ensembl protein_coding_gene 2593 3642 . - . ID=Phyra87368;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1893000002;logic_name=jgi_phyra1 scaffold_1893 ensembl transcript 2593 3642 . - . ID=Phyra87368;Parent=Phyra87368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1893 . CDS 2593 3642 . - 0 ID=Phyra87368;Parent=Phyra87368;rank=1 scaffold_1893 . exon 2593 3642 . - . ID=Phyra87368.1;Parent=Phyra87368;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1944 1 3707 scaffold_1944 . repeat_region 867 891 . ? . description=trf scaffold_1944 . repeat_region 1085 2502 . ? . description=dust scaffold_1944 . repeat_region 3383 3425 . ? . description=trf scaffold_1944 . repeat_region 3523 3569 . ? . description=trf scaffold_1944 ensembl protein_coding_gene 45 3271 . + . ID=Phyra87415;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1944000001;logic_name=jgi_phyra1 scaffold_1944 ensembl transcript 45 3271 . + . ID=Phyra87415;Parent=Phyra87415;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1944 . CDS 45 1060 . + 0 ID=Phyra87415;Parent=Phyra87415;rank=1 scaffold_1944 . exon 45 1060 . + . ID=Phyra87415.1;Parent=Phyra87415;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1944 . CDS 2514 3173 . + 0 ID=Phyra87415;Parent=Phyra87415;rank=2 scaffold_1944 . exon 2514 3173 . + . ID=Phyra87415.2;Parent=Phyra87415;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1944 . CDS 3217 3271 . + 0 ID=Phyra87415;Parent=Phyra87415;rank=3 scaffold_1944 . exon 3217 3271 . + . ID=Phyra87415.3;Parent=Phyra87415;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_1892 1 3708 scaffold_1892 . repeat_region 112 190 . ? . description=trf scaffold_1892 . repeat_region 433 478 . ? . description=trf scaffold_1892 . repeat_region 804 811 . ? . description=dust scaffold_1892 . repeat_region 1789 2539 . ? . description=dust scaffold_1892 ensembl protein_coding_gene 2554 2947 . - . ID=Phyra43432;biotype=protein_coding;external_name=gwEuk.1892.1.1;logic_name=jgi_phyra1 scaffold_1892 ensembl transcript 2554 2947 . - . ID=Phyra43432;Parent=Phyra43432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1892 . CDS 2554 2758 . - 0 ID=Phyra43432;Parent=Phyra43432;rank=2 scaffold_1892 . exon 2554 2758 . - . ID=Phyra43432.2;Parent=Phyra43432;constitutive=1;ensembl_phase=2;rank=2 scaffold_1892 . CDS 2829 2947 . - 0 ID=Phyra43432;Parent=Phyra43432;rank=1 scaffold_1892 . exon 2829 2947 . - . ID=Phyra43432.1;Parent=Phyra43432;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1891 1 3709 scaffold_1891 . repeat_region 827 869 . ? . description=trf scaffold_1891 . repeat_region 1262 2619 . ? . description=dust scaffold_1891 . repeat_region 3351 3392 . ? . description=trf scaffold_1891 ensembl protein_coding_gene 3504 3707 . - . ID=Phyra43431;biotype=protein_coding;external_name=gwEuk.1891.1.1;logic_name=jgi_phyra1 scaffold_1891 ensembl transcript 3504 3707 . - . ID=Phyra43431;Parent=Phyra43431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1891 . CDS 3504 3707 . - 0 ID=Phyra43431;Parent=Phyra43431;rank=1 scaffold_1891 . exon 3504 3707 . - . ID=Phyra43431.1;Parent=Phyra43431;constitutive=1;rank=1 scaffold_1891 ensembl protein_coding_gene 37 722 . - . ID=Phyra87365;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1891000001;logic_name=jgi_phyra1 scaffold_1891 ensembl transcript 37 722 . - . ID=Phyra87365;Parent=Phyra87365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1891 . CDS 37 722 . - 0 ID=Phyra87365;Parent=Phyra87365;rank=1 scaffold_1891 . exon 37 722 . - . ID=Phyra87365.1;Parent=Phyra87365;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1889 1 3710 scaffold_1889 . biological_region 1022 1024 0.999 + . logic_name=eponine scaffold_1889 . repeat_region 1136 1166 . ? . description=trf scaffold_1889 . repeat_region 2041 2953 . ? . description=dust scaffold_1889 . repeat_region 3210 3251 . ? . description=trf scaffold_1889 ensembl protein_coding_gene 1029 2033 . - . ID=Phyra87363;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1889000001;logic_name=jgi_phyra1 scaffold_1889 ensembl transcript 1029 2033 . - . ID=Phyra87363;Parent=Phyra87363;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1889 . CDS 1029 2033 . - 0 ID=Phyra87363;Parent=Phyra87363;rank=1 scaffold_1889 . exon 1029 2033 . - . ID=Phyra87363.1;Parent=Phyra87363;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1890 1 3710 scaffold_1890 . repeat_region 1514 1819 . - . description=GypsyPi-1c_LTR scaffold_1890 . repeat_region 1875 3023 . ? . description=dust scaffold_1890 . repeat_region 3210 3395 . - . description=GypsyPi-1c_I-int scaffold_1890 . biological_region 3466 3468 0.999 + . logic_name=eponine scaffold_1890 . repeat_region 3658 3709 . - . description=GypsyPi-1c_I-int scaffold_1890 ensembl protein_coding_gene 109 1516 . + . ID=Phyra87364;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1890000001;logic_name=jgi_phyra1 scaffold_1890 ensembl transcript 109 1516 . + . ID=Phyra87364;Parent=Phyra87364;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1890 . CDS 109 784 . + 0 ID=Phyra87364;Parent=Phyra87364;rank=1 scaffold_1890 . exon 109 784 . + . ID=Phyra87364.1;Parent=Phyra87364;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1890 . CDS 912 1516 . + 0 ID=Phyra87364;Parent=Phyra87364;rank=2 scaffold_1890 . exon 912 1516 . + . ID=Phyra87364.2;Parent=Phyra87364;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1888 1 3711 scaffold_1888 . repeat_region 813 1826 . ? . description=dust scaffold_1888 . repeat_region 3362 3383 . ? . description=dust scaffold_1888 ensembl protein_coding_gene 1 648 . - . ID=Phyra87362;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1888000001;logic_name=jgi_phyra1 scaffold_1888 ensembl transcript 1 648 . - . ID=Phyra87362;Parent=Phyra87362;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1888 . CDS 1 648 . - 0 ID=Phyra87362;Parent=Phyra87362;rank=1 scaffold_1888 . exon 1 648 . - . ID=Phyra87362.1;Parent=Phyra87362;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1690 1 3712 scaffold_1690 . repeat_region 1035 1301 . + . description=GypsyPi-1c_LTR ##gff-version 3 ##sequence-region scaffold_1844 1 3713 scaffold_1844 . repeat_region 1098 1786 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1954 1 3713 scaffold_1954 . biological_region 673 677 0.999 + . logic_name=eponine scaffold_1954 . repeat_region 862 902 . ? . description=trf scaffold_1954 . repeat_region 1295 2686 . ? . description=dust scaffold_1954 . repeat_region 3577 3618 . ? . description=trf scaffold_1954 . repeat_region 3686 3713 . ? . description=trf scaffold_1954 ensembl protein_coding_gene 54 2961 . + . ID=Phyra87422;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1954000001;logic_name=jgi_phyra1 scaffold_1954 ensembl transcript 54 2961 . + . ID=Phyra87422;Parent=Phyra87422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1954 . CDS 54 1290 . + 0 ID=Phyra87422;Parent=Phyra87422;rank=1 scaffold_1954 . exon 54 1290 . + . ID=Phyra87422.1;Parent=Phyra87422;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1954 . CDS 2894 2961 . + 0 ID=Phyra87422;Parent=Phyra87422;rank=2 scaffold_1954 . exon 2894 2961 . + . ID=Phyra87422.2;Parent=Phyra87422;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1886 1 3714 scaffold_1886 . repeat_region 646 676 . ? . description=trf scaffold_1886 . repeat_region 1499 1539 . ? . description=trf scaffold_1886 . repeat_region 1775 2637 . ? . description=dust scaffold_1886 ensembl protein_coding_gene 5 3714 . - . ID=Phyra87360;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1886000001;logic_name=jgi_phyra1 scaffold_1886 ensembl transcript 5 3714 . - . ID=Phyra87360;Parent=Phyra87360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1886 . CDS 5 1285 . - 0 ID=Phyra87360;Parent=Phyra87360;rank=2 scaffold_1886 . exon 5 1285 . - . ID=Phyra87360.2;Parent=Phyra87360;constitutive=1;rank=2 scaffold_1886 . CDS 2640 3713 . - 0 ID=Phyra87360;Parent=Phyra87360;rank=1 scaffold_1886 . exon 2640 3714 . - . ID=Phyra87360.1;Parent=Phyra87360;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1887 1 3714 scaffold_1887 . biological_region 281 285 0.999 + . logic_name=eponine scaffold_1887 . biological_region 332 337 0.999 + . logic_name=eponine scaffold_1887 . biological_region 361 362 0.999 - . logic_name=eponine scaffold_1887 . biological_region 398 400 0.999 - . logic_name=eponine scaffold_1887 . biological_region 434 439 0.999 + . logic_name=eponine scaffold_1887 . biological_region 490 491 0.999 + . logic_name=eponine scaffold_1887 . repeat_region 970 3220 . + . description=GypsyPi-1c_I-int scaffold_1887 ensembl protein_coding_gene 325 3274 . + . ID=Phyra87361;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1887000001;logic_name=jgi_phyra1 scaffold_1887 ensembl transcript 325 3274 . + . ID=Phyra87361;Parent=Phyra87361;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1887 . CDS 325 1157 . + 0 ID=Phyra87361;Parent=Phyra87361;rank=1 scaffold_1887 . exon 325 1157 . + . ID=Phyra87361.1;Parent=Phyra87361;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1887 . CDS 1272 1923 . + 0 ID=Phyra87361;Parent=Phyra87361;rank=2 scaffold_1887 . exon 1272 1923 . + . ID=Phyra87361.2;Parent=Phyra87361;constitutive=1;ensembl_phase=2;rank=2 scaffold_1887 . CDS 2227 2706 . + 0 ID=Phyra87361;Parent=Phyra87361;rank=3 scaffold_1887 . exon 2227 2706 . + . ID=Phyra87361.3;Parent=Phyra87361;constitutive=1;rank=3 scaffold_1887 . CDS 3031 3180 . + 0 ID=Phyra87361;Parent=Phyra87361;rank=4 scaffold_1887 . exon 3031 3180 . + . ID=Phyra87361.4;Parent=Phyra87361;constitutive=1;rank=4 scaffold_1887 . CDS 3263 3274 . + 0 ID=Phyra87361;Parent=Phyra87361;rank=5 scaffold_1887 . exon 3263 3274 . + . ID=Phyra87361.5;Parent=Phyra87361;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_1884 1 3715 scaffold_1884 . repeat_region 1901 2681 . ? . description=dust scaffold_1884 . repeat_region 3194 3201 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1885 1 3715 scaffold_1885 . repeat_region 1649 2442 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1881 1 3717 scaffold_1881 . biological_region 1963 1968 0.999 + . logic_name=eponine scaffold_1881 ensembl protein_coding_gene 12 2570 . - . ID=Phyra87356;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1881000001;logic_name=jgi_phyra1 scaffold_1881 ensembl transcript 12 2570 . - . ID=Phyra87356;Parent=Phyra87356;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1881 . CDS 12 2570 . - 0 ID=Phyra87356;Parent=Phyra87356;rank=1 scaffold_1881 . exon 12 2570 . - . ID=Phyra87356.1;Parent=Phyra87356;constitutive=1;rank=1 scaffold_1881 ensembl protein_coding_gene 3265 3714 . - . ID=Phyra87357;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1881000002;logic_name=jgi_phyra1 scaffold_1881 ensembl transcript 3265 3714 . - . ID=Phyra87357;Parent=Phyra87357;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1881 . CDS 3265 3714 . - 0 ID=Phyra87357;Parent=Phyra87357;rank=1 scaffold_1881 . exon 3265 3714 . - . ID=Phyra87357.1;Parent=Phyra87357;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1879 1 3718 scaffold_1879 . repeat_region 1422 2772 . ? . description=dust scaffold_1879 ensembl protein_coding_gene 3014 3451 . + . ID=Phyra87354;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1879000001;logic_name=jgi_phyra1 scaffold_1879 ensembl transcript 3014 3451 . + . ID=Phyra87354;Parent=Phyra87354;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1879 . CDS 3014 3451 . + 0 ID=Phyra87354;Parent=Phyra87354;rank=1 scaffold_1879 . exon 3014 3451 . + . ID=Phyra87354.1;Parent=Phyra87354;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1880 1 3718 scaffold_1880 . biological_region 226 227 0.999 - . logic_name=eponine scaffold_1880 . biological_region 666 668 0.999 - . logic_name=eponine scaffold_1880 . biological_region 827 827 0.999 + . logic_name=eponine scaffold_1880 . repeat_region 1179 1449 . ? . description=dust scaffold_1880 . biological_region 1532 1536 0.999 + . logic_name=eponine scaffold_1880 . repeat_region 1599 1678 . ? . description=trf scaffold_1880 . biological_region 2027 2032 0.999 - . logic_name=eponine scaffold_1880 ensembl protein_coding_gene 47 2256 . + . ID=Phyra87355;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1880000001;logic_name=jgi_phyra1 scaffold_1880 ensembl transcript 47 2256 . + . ID=Phyra87355;Parent=Phyra87355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1880 . CDS 47 1151 . + 0 ID=Phyra87355;Parent=Phyra87355;rank=1 scaffold_1880 . exon 47 1151 . + . ID=Phyra87355.1;Parent=Phyra87355;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1880 . CDS 1733 2256 . + 0 ID=Phyra87355;Parent=Phyra87355;rank=2 scaffold_1880 . exon 1733 2256 . + . ID=Phyra87355.2;Parent=Phyra87355;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1878 1 3722 scaffold_1878 . repeat_region 1145 2039 . ? . description=dust scaffold_1878 . repeat_region 3643 3686 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1877 1 3726 scaffold_1877 . repeat_region 156 460 . + . description=GypsyPi-1c_LTR scaffold_1877 . repeat_region 1425 2931 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1873 1 3728 scaffold_1873 . repeat_region 1164 1776 . ? . description=dust scaffold_1873 . repeat_region 2458 2670 . ? . description=trf scaffold_1873 . repeat_region 3432 3443 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1882 1 3728 scaffold_1882 . repeat_region 1578 2442 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1898 1 3728 scaffold_1898 . biological_region 64 67 0.999 + . logic_name=eponine scaffold_1898 . biological_region 776 780 0.999 + . logic_name=eponine scaffold_1898 . biological_region 820 825 0.999 + . logic_name=eponine scaffold_1898 . repeat_region 844 923 . ? . description=trf scaffold_1898 . repeat_region 1151 2492 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1874 1 3729 scaffold_1874 . repeat_region 377 509 . ? . description=trf scaffold_1874 . repeat_region 1440 2298 . ? . description=dust scaffold_1874 . biological_region 3090 3093 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1895 1 3730 scaffold_1895 . repeat_region 1129 2212 . ? . description=dust scaffold_1895 . repeat_region 3402 3423 . ? . description=trf scaffold_1895 ensembl protein_coding_gene 918 1127 . - . ID=Phyra43455;biotype=protein_coding;external_name=gwEuk.1895.7.1;logic_name=jgi_phyra1 scaffold_1895 ensembl transcript 918 1127 . - . ID=Phyra43455;Parent=Phyra43455;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1895 . CDS 918 1127 . - 0 ID=Phyra43455;Parent=Phyra43455;rank=1 scaffold_1895 . exon 918 1127 . - . ID=Phyra43455.1;Parent=Phyra43455;constitutive=1;rank=1 scaffold_1895 ensembl protein_coding_gene 4 866 . - . ID=Phyra87369;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1895000001;logic_name=jgi_phyra1 scaffold_1895 ensembl transcript 4 866 . - . ID=Phyra87369;Parent=Phyra87369;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1895 . CDS 4 866 . - 0 ID=Phyra87369;Parent=Phyra87369;rank=1 scaffold_1895 . exon 4 866 . - . ID=Phyra87369.1;Parent=Phyra87369;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1895 ensembl protein_coding_gene 2646 3724 . + . ID=Phyra87370;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1895000002;logic_name=jgi_phyra1 scaffold_1895 ensembl transcript 2646 3724 . + . ID=Phyra87370;Parent=Phyra87370;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1895 . CDS 2646 3724 . + 0 ID=Phyra87370;Parent=Phyra87370;rank=1 scaffold_1895 . exon 2646 3724 . + . ID=Phyra87370.1;Parent=Phyra87370;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1871 1 3732 scaffold_1871 . biological_region 408 409 0.999 + . logic_name=eponine scaffold_1871 . biological_region 552 552 0.999 - . logic_name=eponine scaffold_1871 . biological_region 823 825 0.999 + . logic_name=eponine scaffold_1871 . biological_region 1184 1187 0.999 + . logic_name=eponine scaffold_1871 . biological_region 1734 1735 0.999 - . logic_name=eponine scaffold_1871 . repeat_region 1970 2414 . ? . description=dust scaffold_1871 ensembl protein_coding_gene 25 1942 . - . ID=Phyra87352;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1871000001;logic_name=jgi_phyra1 scaffold_1871 ensembl transcript 25 1942 . - . ID=Phyra87352;Parent=Phyra87352;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1871 . CDS 25 1487 . - 0 ID=Phyra87352;Parent=Phyra87352;rank=2 scaffold_1871 . exon 25 1487 . - . ID=Phyra87352.2;Parent=Phyra87352;constitutive=1;ensembl_phase=1;rank=2 scaffold_1871 . CDS 1555 1942 . - 0 ID=Phyra87352;Parent=Phyra87352;rank=1 scaffold_1871 . exon 1555 1942 . - . ID=Phyra87352.1;Parent=Phyra87352;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1902 1 3735 scaffold_1902 . biological_region 370 371 0.999 - . logic_name=eponine scaffold_1902 . biological_region 461 462 0.999 - . logic_name=eponine scaffold_1902 . repeat_region 831 2257 . ? . description=dust scaffold_1902 . repeat_region 2258 3733 . - . description=GypsyPi-1c_I-int scaffold_1902 ensembl protein_coding_gene 2261 2571 . - . ID=Phyra43603;biotype=protein_coding;external_name=gwEuk.1902.1.1;logic_name=jgi_phyra1 scaffold_1902 ensembl transcript 2261 2571 . - . ID=Phyra43603;Parent=Phyra43603;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1902 . CDS 2261 2571 . - 0 ID=Phyra43603;Parent=Phyra43603;rank=1 scaffold_1902 . exon 2261 2571 . - . ID=Phyra43603.1;Parent=Phyra43603;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1869 1 3737 scaffold_1869 . biological_region 790 799 0.999 + . logic_name=eponine scaffold_1869 . repeat_region 1101 2323 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1866 1 3740 scaffold_1866 . repeat_region 1174 2332 . ? . description=dust scaffold_1866 . repeat_region 2848 2889 . ? . description=trf scaffold_1866 ensembl protein_coding_gene 3087 3734 . + . ID=Phyra72520;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1866000001;logic_name=jgi_phyra1 scaffold_1866 ensembl transcript 3087 3734 . + . ID=Phyra72520;Parent=Phyra72520;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1866 . CDS 3087 3734 . + 0 ID=Phyra72520;Parent=Phyra72520;rank=1 scaffold_1866 . exon 3087 3734 . + . ID=Phyra72520.1;Parent=Phyra72520;constitutive=1;rank=1 scaffold_1866 ensembl protein_coding_gene 1 928 . + . ID=Phyra87350;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1866000001;logic_name=jgi_phyra1 scaffold_1866 ensembl transcript 1 928 . + . ID=Phyra87350;Parent=Phyra87350;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1866 . CDS 1 885 . + 0 ID=Phyra87350;Parent=Phyra87350;rank=1 scaffold_1866 . exon 1 885 . + . ID=Phyra87350.1;Parent=Phyra87350;constitutive=1;rank=1 scaffold_1866 . CDS 917 928 . + 0 ID=Phyra87350;Parent=Phyra87350;rank=2 scaffold_1866 . exon 917 928 . + . ID=Phyra87350.2;Parent=Phyra87350;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1868 1 3740 scaffold_1868 . repeat_region 1240 2257 . ? . description=dust scaffold_1868 . biological_region 3268 3268 0.999 + . logic_name=eponine scaffold_1868 ensembl protein_coding_gene 682 828 . + . ID=Phyra43416;biotype=protein_coding;external_name=gwEuk.1868.2.1;logic_name=jgi_phyra1 scaffold_1868 ensembl transcript 682 828 . + . ID=Phyra43416;Parent=Phyra43416;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1868 . CDS 682 828 . + 0 ID=Phyra43416;Parent=Phyra43416;rank=1 scaffold_1868 . exon 682 828 . + . ID=Phyra43416.1;Parent=Phyra43416;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1867 1 3742 scaffold_1867 . repeat_region 1475 2649 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1864 1 3743 scaffold_1864 . biological_region 24 27 0.999 + . logic_name=eponine scaffold_1864 . biological_region 92 94 0.999 + . logic_name=eponine scaffold_1864 . repeat_region 167 445 . - . description=GypsyPi-1c_I-int scaffold_1864 . repeat_region 763 1948 . - . description=GypsyPi-1c_I-int scaffold_1864 . repeat_region 1949 2417 . ? . description=dust scaffold_1864 . repeat_region 2418 3409 . - . description=GypsyPi-1c_I-int scaffold_1864 ensembl protein_coding_gene 709 3733 . - . ID=Phyra87349;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1864000001;logic_name=jgi_phyra1 scaffold_1864 ensembl transcript 709 3733 . - . ID=Phyra87349;Parent=Phyra87349;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1864 . CDS 709 720 . - 0 ID=Phyra87349;Parent=Phyra87349;rank=4 scaffold_1864 . exon 709 720 . - . ID=Phyra87349.4;Parent=Phyra87349;constitutive=1;rank=4 scaffold_1864 . CDS 803 952 . - 0 ID=Phyra87349;Parent=Phyra87349;rank=3 scaffold_1864 . exon 803 952 . - . ID=Phyra87349.3;Parent=Phyra87349;constitutive=1;rank=3 scaffold_1864 . CDS 1278 1757 . - 0 ID=Phyra87349;Parent=Phyra87349;rank=2 scaffold_1864 . exon 1278 1757 . - . ID=Phyra87349.2;Parent=Phyra87349;constitutive=1;rank=2 scaffold_1864 . CDS 2456 3733 . - 0 ID=Phyra87349;Parent=Phyra87349;rank=1 scaffold_1864 . exon 2456 3733 . - . ID=Phyra87349.1;Parent=Phyra87349;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1862 1 3745 scaffold_1862 . biological_region 975 976 0.999 - . logic_name=eponine scaffold_1862 . biological_region 979 982 0.999 + . logic_name=eponine scaffold_1862 . biological_region 1036 1038 0.999 - . logic_name=eponine scaffold_1862 . repeat_region 1402 2267 . ? . description=dust scaffold_1862 . biological_region 3634 3636 0.999 + . logic_name=eponine scaffold_1862 ensembl protein_coding_gene 691 1344 . - . ID=Phyra43398;biotype=protein_coding;external_name=gwEuk.1862.1.1;logic_name=jgi_phyra1 scaffold_1862 ensembl transcript 691 1344 . - . ID=Phyra43398;Parent=Phyra43398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1862 . CDS 691 1344 . - 0 ID=Phyra43398;Parent=Phyra43398;rank=1 scaffold_1862 . exon 691 1344 . - . ID=Phyra43398.1;Parent=Phyra43398;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1859 1 3747 scaffold_1859 . repeat_region 1393 2355 . ? . description=dust scaffold_1859 . biological_region 2665 2669 0.999 - . logic_name=eponine scaffold_1859 . biological_region 2827 2830 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1863 1 3747 scaffold_1863 . repeat_region 311 345 . ? . description=trf scaffold_1863 . repeat_region 527 576 . ? . description=trf scaffold_1863 . biological_region 637 640 0.999 - . logic_name=eponine scaffold_1863 . biological_region 667 667 0.999 - . logic_name=eponine scaffold_1863 . biological_region 736 743 0.999 - . logic_name=eponine scaffold_1863 . biological_region 793 798 0.999 + . logic_name=eponine scaffold_1863 . biological_region 840 841 0.999 + . logic_name=eponine scaffold_1863 ensembl protein_coding_gene 60 1046 . - . ID=Phyra87347;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1863000001;logic_name=jgi_phyra1 scaffold_1863 ensembl transcript 60 1046 . - . ID=Phyra87347;Parent=Phyra87347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1863 . CDS 60 1046 . - 0 ID=Phyra87347;Parent=Phyra87347;rank=1 scaffold_1863 . exon 60 1046 . - . ID=Phyra87347.1;Parent=Phyra87347;constitutive=1;rank=1 scaffold_1863 ensembl protein_coding_gene 1704 3679 . + . ID=Phyra87348;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1863000002;logic_name=jgi_phyra1 scaffold_1863 ensembl transcript 1704 3679 . + . ID=Phyra87348;Parent=Phyra87348;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1863 . CDS 1704 3679 . + 0 ID=Phyra87348;Parent=Phyra87348;rank=1 scaffold_1863 . exon 1704 3679 . + . ID=Phyra87348.1;Parent=Phyra87348;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1963 1 3747 scaffold_1963 . repeat_region 966 2516 . ? . description=dust scaffold_1963 ensembl protein_coding_gene 248 912 . + . ID=Phyra87426;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1963000001;logic_name=jgi_phyra1 scaffold_1963 ensembl transcript 248 912 . + . ID=Phyra87426;Parent=Phyra87426;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1963 . CDS 248 854 . + 0 ID=Phyra87426;Parent=Phyra87426;rank=1 scaffold_1963 . exon 248 854 . + . ID=Phyra87426.1;Parent=Phyra87426;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1963 . CDS 905 912 . + 0 ID=Phyra87426;Parent=Phyra87426;rank=2 scaffold_1963 . exon 905 912 . + . ID=Phyra87426.2;Parent=Phyra87426;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1860 1 3748 scaffold_1860 . biological_region 958 962 0.999 - . logic_name=eponine scaffold_1860 . repeat_region 2117 2565 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1861 1 3748 scaffold_1861 . repeat_region 1691 2859 . ? . description=dust scaffold_1861 . repeat_region 3034 3733 . + . description=GypsyPi-1c_I-int scaffold_1861 ensembl protein_coding_gene 882 3741 . + . ID=Phyra87345;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1861000001;logic_name=jgi_phyra1 scaffold_1861 ensembl transcript 882 3741 . + . ID=Phyra87345;Parent=Phyra87345;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1861 . CDS 882 1683 . + 0 ID=Phyra87345;Parent=Phyra87345;rank=1 scaffold_1861 . exon 882 1683 . + . ID=Phyra87345.1;Parent=Phyra87345;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1861 . CDS 2934 3741 . + 0 ID=Phyra87345;Parent=Phyra87345;rank=2 scaffold_1861 . exon 2934 3741 . + . ID=Phyra87345.2;Parent=Phyra87345;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1857 1 3749 scaffold_1857 . repeat_region 1224 2902 . ? . description=dust scaffold_1857 . biological_region 3480 3484 0.999 + . logic_name=eponine scaffold_1857 ensembl protein_coding_gene 22 3617 . - . ID=Phyra87344;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1857000001;logic_name=jgi_phyra1 scaffold_1857 ensembl transcript 22 3617 . - . ID=Phyra87344;Parent=Phyra87344;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1857 . CDS 22 1177 . - 0 ID=Phyra87344;Parent=Phyra87344;rank=2 scaffold_1857 . exon 22 1177 . - . ID=Phyra87344.2;Parent=Phyra87344;constitutive=1;ensembl_phase=2;rank=2 scaffold_1857 . CDS 2911 3617 . - 0 ID=Phyra87344;Parent=Phyra87344;rank=1 scaffold_1857 . exon 2911 3617 . - . ID=Phyra87344.1;Parent=Phyra87344;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1852 1 3750 scaffold_1852 . biological_region 206 209 0.999 + . logic_name=eponine scaffold_1852 . repeat_region 2006 2113 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1854 1 3751 scaffold_1854 . biological_region 269 270 0.999 - . logic_name=eponine scaffold_1854 . biological_region 321 326 0.999 - . logic_name=eponine scaffold_1854 . biological_region 361 362 0.999 + . logic_name=eponine scaffold_1854 . biological_region 399 399 0.999 + . logic_name=eponine scaffold_1854 . biological_region 423 428 0.999 - . logic_name=eponine scaffold_1854 . biological_region 475 479 0.999 - . logic_name=eponine scaffold_1854 . repeat_region 1537 2763 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1855 1 3751 scaffold_1855 . biological_region 250 255 0.999 + . logic_name=eponine scaffold_1855 . biological_region 347 350 0.999 - . logic_name=eponine scaffold_1855 . biological_region 505 506 0.999 - . logic_name=eponine scaffold_1855 . repeat_region 1709 2318 . ? . description=dust scaffold_1855 . repeat_region 3686 3694 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1856 1 3752 scaffold_1856 . repeat_region 245 261 . ? . description=dust scaffold_1856 . repeat_region 1518 1595 . ? . description=trf scaffold_1856 . repeat_region 1876 1943 . ? . description=trf scaffold_1856 . biological_region 2167 2168 0.999 + . logic_name=eponine scaffold_1856 . biological_region 3353 3356 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1849 1 3753 scaffold_1849 . biological_region 687 691 0.999 + . logic_name=eponine scaffold_1849 . repeat_region 1480 1487 . ? . description=dust scaffold_1849 . repeat_region 1627 2822 . ? . description=dust scaffold_1849 ensembl protein_coding_gene 541 1212 . - . ID=Phyra87341;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1849000001;logic_name=jgi_phyra1 scaffold_1849 ensembl transcript 541 1212 . - . ID=Phyra87341;Parent=Phyra87341;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1849 . CDS 541 837 . - 0 ID=Phyra87341;Parent=Phyra87341;rank=3 scaffold_1849 . exon 541 837 . - . ID=Phyra87341.3;Parent=Phyra87341;constitutive=1;rank=3 scaffold_1849 . CDS 893 1041 . - 0 ID=Phyra87341;Parent=Phyra87341;rank=2 scaffold_1849 . exon 893 1041 . - . ID=Phyra87341.2;Parent=Phyra87341;constitutive=1;ensembl_phase=1;rank=2 scaffold_1849 . CDS 1176 1212 . - 0 ID=Phyra87341;Parent=Phyra87341;rank=1 scaffold_1849 . exon 1176 1212 . - . ID=Phyra87341.1;Parent=Phyra87341;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1853 1 3754 scaffold_1853 . biological_region 439 441 0.999 - . logic_name=eponine scaffold_1853 . biological_region 461 466 0.999 - . logic_name=eponine scaffold_1853 . biological_region 528 530 0.999 - . logic_name=eponine scaffold_1853 . repeat_region 1584 2476 . ? . description=dust scaffold_1853 ensembl protein_coding_gene 5 1330 . - . ID=Phyra87343;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1853000001;logic_name=jgi_phyra1 scaffold_1853 ensembl transcript 5 1330 . - . ID=Phyra87343;Parent=Phyra87343;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1853 . CDS 5 1330 . - 0 ID=Phyra87343;Parent=Phyra87343;rank=1 scaffold_1853 . exon 5 1330 . - . ID=Phyra87343.1;Parent=Phyra87343;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1848 1 3755 scaffold_1848 . repeat_region 1750 2281 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1850 1 3755 scaffold_1850 . repeat_region 1331 2491 . ? . description=dust scaffold_1850 ensembl protein_coding_gene 2716 3755 . - . ID=Phyra87342;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1850000001;logic_name=jgi_phyra1 scaffold_1850 ensembl transcript 2716 3755 . - . ID=Phyra87342;Parent=Phyra87342;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1850 . CDS 2716 2751 . - 0 ID=Phyra87342;Parent=Phyra87342;rank=2 scaffold_1850 . exon 2716 2751 . - . ID=Phyra87342.2;Parent=Phyra87342;constitutive=1;rank=2 scaffold_1850 . CDS 2846 3754 . - 0 ID=Phyra87342;Parent=Phyra87342;rank=1 scaffold_1850 . exon 2846 3755 . - . ID=Phyra87342.1;Parent=Phyra87342;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1851 1 3755 scaffold_1851 . repeat_region 987 1071 . ? . description=dust scaffold_1851 . repeat_region 1782 2347 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1555 1 3756 scaffold_1555 . biological_region 444 447 0.999 + . logic_name=eponine scaffold_1555 . repeat_region 1621 2293 . ? . description=dust scaffold_1555 . repeat_region 2721 2729 . ? . description=dust scaffold_1555 ensembl protein_coding_gene 44 2544 . + . ID=Phyra87095;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1555000001;logic_name=jgi_phyra1 scaffold_1555 ensembl transcript 44 2544 . + . ID=Phyra87095;Parent=Phyra87095;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1555 . CDS 44 1618 . + 0 ID=Phyra87095;Parent=Phyra87095;rank=1 scaffold_1555 . exon 44 1618 . + . ID=Phyra87095.1;Parent=Phyra87095;constitutive=1;rank=1 scaffold_1555 . CDS 2362 2544 . + 0 ID=Phyra87095;Parent=Phyra87095;rank=2 scaffold_1555 . exon 2362 2544 . + . ID=Phyra87095.2;Parent=Phyra87095;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1842 1 3761 scaffold_1842 . repeat_region 1000 1845 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1828 1 3762 scaffold_1828 . repeat_region 1748 2530 . ? . description=dust scaffold_1828 . repeat_region 3153 3161 . ? . description=dust scaffold_1828 ensembl protein_coding_gene 375 1745 . + . ID=Phyra43347;biotype=protein_coding;external_name=gwEuk.1828.1.1;logic_name=jgi_phyra1 scaffold_1828 ensembl transcript 375 1745 . + . ID=Phyra43347;Parent=Phyra43347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1828 . CDS 375 652 . + 0 ID=Phyra43347;Parent=Phyra43347;rank=1 scaffold_1828 . exon 375 652 . + . ID=Phyra43347.1;Parent=Phyra43347;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1828 . CDS 1364 1745 . + 0 ID=Phyra43347;Parent=Phyra43347;rank=2 scaffold_1828 . exon 1364 1745 . + . ID=Phyra43347.2;Parent=Phyra43347;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1840 1 3764 scaffold_1840 . biological_region 766 767 0.999 + . logic_name=eponine scaffold_1840 . repeat_region 1346 1386 . ? . description=trf scaffold_1840 . repeat_region 1517 2346 . ? . description=dust scaffold_1840 . repeat_region 3677 3720 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1838 1 3766 scaffold_1838 . repeat_region 234 276 . ? . description=trf scaffold_1838 . repeat_region 699 719 . ? . description=trf scaffold_1838 . repeat_region 1526 2727 . ? . description=dust scaffold_1838 ensembl protein_coding_gene 396 3740 . + . ID=Phyra87337;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1838000001;logic_name=jgi_phyra1 scaffold_1838 ensembl transcript 396 3740 . + . ID=Phyra87337;Parent=Phyra87337;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1838 . CDS 396 1520 . + 0 ID=Phyra87337;Parent=Phyra87337;rank=1 scaffold_1838 . exon 396 1520 . + . ID=Phyra87337.1;Parent=Phyra87337;constitutive=1;rank=1 scaffold_1838 . CDS 2769 3740 . + 0 ID=Phyra87337;Parent=Phyra87337;rank=2 scaffold_1838 . exon 2769 3740 . + . ID=Phyra87337.2;Parent=Phyra87337;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1836 1 3772 scaffold_1836 . repeat_region 5 41 . ? . description=dust scaffold_1836 . repeat_region 6 41 . ? . description=trf scaffold_1836 . repeat_region 7 42 . ? . description=trf scaffold_1836 . repeat_region 58 100 . ? . description=trf scaffold_1836 . repeat_region 373 417 . ? . description=trf scaffold_1836 . repeat_region 1476 2521 . ? . description=dust scaffold_1836 . repeat_region 3439 3460 . ? . description=trf scaffold_1836 . repeat_region 3729 3751 . ? . description=trf scaffold_1836 ensembl tRNA_gene 101 172 . + . ID=EPrPRAG00000000209;biotype=tRNA;description=tRNA-Gly for anticodon UCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_1836 ensembl transcript 101 172 . + . ID=EPrPRAT00000000209;Parent=EPrPRAG00000000209;biotype=tRNA;logic_name=ncrna_eg scaffold_1836 . exon 101 172 . + . ID=EPrPRAE00000000209;Parent=EPrPRAT00000000209;constitutive=1;rank=1 scaffold_1836 ensembl protein_coding_gene 1031 3326 . - . ID=Phyra87335;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1836000001;logic_name=jgi_phyra1 scaffold_1836 ensembl transcript 1031 3326 . - . ID=Phyra87335;Parent=Phyra87335;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1836 . CDS 1031 1409 . - 0 ID=Phyra87335;Parent=Phyra87335;rank=2 scaffold_1836 . exon 1031 1409 . - . ID=Phyra87335.2;Parent=Phyra87335;constitutive=1;ensembl_phase=2;rank=2 scaffold_1836 . CDS 2527 3326 . - 0 ID=Phyra87335;Parent=Phyra87335;rank=1 scaffold_1836 . exon 2527 3326 . - . ID=Phyra87335.1;Parent=Phyra87335;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1967 1 3772 scaffold_1967 . repeat_region 1411 2258 . ? . description=dust scaffold_1967 . biological_region 3306 3310 0.999 + . logic_name=eponine scaffold_1967 ensembl protein_coding_gene 54 1200 . + . ID=Phyra87428;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1967000001;logic_name=jgi_phyra1 scaffold_1967 ensembl transcript 54 1200 . + . ID=Phyra87428;Parent=Phyra87428;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1967 . exon 54 1106 . + . ID=Phyra87428.1;Parent=Phyra87428;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1967 . CDS 56 1106 . + 0 ID=Phyra87428;Parent=Phyra87428;rank=1 scaffold_1967 . CDS 1160 1200 . + 0 ID=Phyra87428;Parent=Phyra87428;rank=2 scaffold_1967 . exon 1160 1200 . + . ID=Phyra87428.2;Parent=Phyra87428;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2171 1 3772 scaffold_2171 . repeat_region 1249 2321 . ? . description=dust scaffold_2171 ensembl protein_coding_gene 338 601 . + . ID=Phyra44670;biotype=protein_coding;external_name=gwEuk.2171.4.1;logic_name=jgi_phyra1 scaffold_2171 ensembl transcript 338 601 . + . ID=Phyra44670;Parent=Phyra44670;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2171 . CDS 338 601 . + 0 ID=Phyra44670;Parent=Phyra44670;rank=1 scaffold_2171 . exon 338 601 . + . ID=Phyra44670.1;Parent=Phyra44670;constitutive=1;rank=1 scaffold_2171 ensembl protein_coding_gene 625 3115 . + . ID=Phyra87564;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2171000002;logic_name=jgi_phyra1 scaffold_2171 ensembl transcript 625 3115 . + . ID=Phyra87564;Parent=Phyra87564;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2171 . exon 625 1235 . + . ID=Phyra87564.1;Parent=Phyra87564;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_2171 . CDS 626 1235 . + 0 ID=Phyra87564;Parent=Phyra87564;rank=1 scaffold_2171 . CDS 2514 3115 . + 0 ID=Phyra87564;Parent=Phyra87564;rank=2 scaffold_2171 . exon 2514 3115 . + . ID=Phyra87564.2;Parent=Phyra87564;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1833 1 3773 scaffold_1833 . repeat_region 425 444 . ? . description=trf scaffold_1833 . repeat_region 817 848 . ? . description=trf scaffold_1833 . biological_region 1243 1248 0.999 - . logic_name=eponine scaffold_1833 . biological_region 1298 1302 0.999 + . logic_name=eponine scaffold_1833 . biological_region 1338 1339 0.999 - . logic_name=eponine scaffold_1833 . repeat_region 1967 2768 . ? . description=dust scaffold_1833 ensembl protein_coding_gene 451 738 . + . ID=Phyra43360;biotype=protein_coding;external_name=gwEuk.1833.1.1;logic_name=jgi_phyra1 scaffold_1833 ensembl transcript 451 738 . + . ID=Phyra43360;Parent=Phyra43360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1833 . CDS 451 738 . + 0 ID=Phyra43360;Parent=Phyra43360;rank=1 scaffold_1833 . exon 451 738 . + . ID=Phyra43360.1;Parent=Phyra43360;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1834 1 3774 scaffold_1834 . biological_region 148 148 0.999 - . logic_name=eponine scaffold_1834 . repeat_region 620 1271 . - . description=GypsyPi-1c_I-int scaffold_1834 . biological_region 1266 1273 0.999 + . logic_name=eponine scaffold_1834 . biological_region 1357 1363 0.999 - . logic_name=eponine scaffold_1834 . biological_region 1416 1422 0.999 + . logic_name=eponine scaffold_1834 . biological_region 1444 1448 0.999 + . logic_name=eponine scaffold_1834 . biological_region 1524 1527 0.999 + . logic_name=eponine scaffold_1834 . repeat_region 1584 2989 . - . description=GypsyPi-1c_I-int scaffold_1834 . repeat_region 1886 2198 . ? . description=dust scaffold_1834 . repeat_region 3570 3583 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1875 1 3774 scaffold_1875 . repeat_region 554 586 . ? . description=dust scaffold_1875 . repeat_region 594 2291 . ? . description=dust scaffold_1875 . repeat_region 2293 2771 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1832 1 3777 scaffold_1832 . biological_region 521 526 0.999 + . logic_name=eponine scaffold_1832 . biological_region 525 529 0.999 - . logic_name=eponine scaffold_1832 . biological_region 549 549 0.999 - . logic_name=eponine scaffold_1832 . repeat_region 1106 2361 . ? . description=dust scaffold_1832 . biological_region 2810 2818 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1830 1 3779 scaffold_1830 . biological_region 158 162 0.999 - . logic_name=eponine scaffold_1830 . repeat_region 594 636 . ? . description=trf scaffold_1830 . repeat_region 1020 1062 . ? . description=trf scaffold_1830 . repeat_region 1491 2330 . ? . description=dust scaffold_1830 . biological_region 3072 3076 0.999 + . logic_name=eponine scaffold_1830 ensembl protein_coding_gene 1188 1490 . - . ID=Phyra43359;biotype=protein_coding;external_name=gwEuk.1830.3.1;logic_name=jgi_phyra1 scaffold_1830 ensembl transcript 1188 1490 . - . ID=Phyra43359;Parent=Phyra43359;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1830 . CDS 1188 1490 . - 0 ID=Phyra43359;Parent=Phyra43359;rank=1 scaffold_1830 . exon 1188 1490 . - . ID=Phyra43359.1;Parent=Phyra43359;constitutive=1;rank=1 scaffold_1830 ensembl protein_coding_gene 2378 3768 . + . ID=Phyra87329;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1830000001;logic_name=jgi_phyra1 scaffold_1830 ensembl transcript 2378 3768 . + . ID=Phyra87329;Parent=Phyra87329;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1830 . CDS 2378 3768 . + 0 ID=Phyra87329;Parent=Phyra87329;rank=1 scaffold_1830 . exon 2378 3768 . + . ID=Phyra87329.1;Parent=Phyra87329;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1837 1 3780 scaffold_1837 . repeat_region 1755 2691 . ? . description=dust scaffold_1837 . repeat_region 3247 3293 . ? . description=trf scaffold_1837 ensembl protein_coding_gene 941 1660 . - . ID=Phyra87336;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1837000001;logic_name=jgi_phyra1 scaffold_1837 ensembl transcript 941 1660 . - . ID=Phyra87336;Parent=Phyra87336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1837 . CDS 941 1660 . - 0 ID=Phyra87336;Parent=Phyra87336;rank=1 scaffold_1837 . exon 941 1660 . - . ID=Phyra87336.1;Parent=Phyra87336;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1829 1 3783 scaffold_1829 . repeat_region 72 79 . ? . description=dust scaffold_1829 . repeat_region 1044 1984 . ? . description=dust scaffold_1829 . biological_region 3559 3559 0.999 + . logic_name=eponine scaffold_1829 . biological_region 3600 3603 0.999 + . logic_name=eponine scaffold_1829 . biological_region 3661 3666 0.999 - . logic_name=eponine scaffold_1829 ensembl protein_coding_gene 2189 3776 . - . ID=Phyra87328;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1829000001;logic_name=jgi_phyra1 scaffold_1829 ensembl transcript 2189 3776 . - . ID=Phyra87328;Parent=Phyra87328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1829 . CDS 2189 3183 . - 0 ID=Phyra87328;Parent=Phyra87328;rank=3 scaffold_1829 . exon 2189 3183 . - . ID=Phyra87328.3;Parent=Phyra87328;constitutive=1;ensembl_phase=1;rank=3 scaffold_1829 . CDS 3246 3446 . - 0 ID=Phyra87328;Parent=Phyra87328;rank=2 scaffold_1829 . exon 3246 3446 . - . ID=Phyra87328.2;Parent=Phyra87328;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1829 . CDS 3512 3776 . - 0 ID=Phyra87328;Parent=Phyra87328;rank=1 scaffold_1829 . exon 3512 3776 . - . ID=Phyra87328.1;Parent=Phyra87328;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1826 1 3784 scaffold_1826 . biological_region 1584 1587 0.999 + . logic_name=eponine scaffold_1826 . repeat_region 1730 2879 . ? . description=dust scaffold_1826 . repeat_region 2979 3009 . ? . description=trf scaffold_1826 ensembl protein_coding_gene 1 498 . + . ID=Phyra43338;biotype=protein_coding;external_name=gwEuk.1826.5.1;logic_name=jgi_phyra1 scaffold_1826 ensembl transcript 1 498 . + . ID=Phyra43338;Parent=Phyra43338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1826 . CDS 1 498 . + 0 ID=Phyra43338;Parent=Phyra43338;rank=1 scaffold_1826 . exon 1 498 . + . ID=Phyra43338.1;Parent=Phyra43338;constitutive=1;rank=1 scaffold_1826 ensembl protein_coding_gene 953 1681 . - . ID=Phyra72518;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1826000002;logic_name=jgi_phyra1 scaffold_1826 ensembl transcript 953 1681 . - . ID=Phyra72518;Parent=Phyra72518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1826 . CDS 953 1681 . - 0 ID=Phyra72518;Parent=Phyra72518;rank=1 scaffold_1826 . exon 953 1681 . - . ID=Phyra72518.1;Parent=Phyra72518;constitutive=1;rank=1 scaffold_1826 ensembl protein_coding_gene 2884 3784 . - . ID=Phyra87324;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1826000003;logic_name=jgi_phyra1 scaffold_1826 ensembl transcript 2884 3784 . - . ID=Phyra87324;Parent=Phyra87324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1826 . CDS 2884 3783 . - 0 ID=Phyra87324;Parent=Phyra87324;rank=1 scaffold_1826 . exon 2884 3784 . - . ID=Phyra87324.1;Parent=Phyra87324;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1825 1 3786 scaffold_1825 . biological_region 117 117 0.999 - . logic_name=eponine scaffold_1825 . repeat_region 1757 2393 . ? . description=dust scaffold_1825 . repeat_region 2620 2706 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1843 1 3786 scaffold_1843 . biological_region 844 845 0.999 + . logic_name=eponine scaffold_1843 . biological_region 1396 1399 0.999 - . logic_name=eponine scaffold_1843 . repeat_region 1660 2457 . ? . description=dust scaffold_1843 . repeat_region 3104 3248 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1824 1 3787 scaffold_1824 . repeat_region 1042 1061 . ? . description=trf scaffold_1824 . repeat_region 1387 2928 . ? . description=dust scaffold_1824 ensembl protein_coding_gene 307 1035 . + . ID=Phyra72516;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1824000001;logic_name=jgi_phyra1 scaffold_1824 ensembl transcript 307 1035 . + . ID=Phyra72516;Parent=Phyra72516;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1824 . CDS 307 1035 . + 0 ID=Phyra72516;Parent=Phyra72516;rank=1 scaffold_1824 . exon 307 1035 . + . ID=Phyra72516.1;Parent=Phyra72516;constitutive=1;rank=1 scaffold_1824 ensembl protein_coding_gene 2946 3784 . + . ID=Phyra87321;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1824000002;logic_name=jgi_phyra1 scaffold_1824 ensembl transcript 2946 3784 . + . ID=Phyra87321;Parent=Phyra87321;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1824 . CDS 2946 3784 . + 0 ID=Phyra87321;Parent=Phyra87321;rank=1 scaffold_1824 . exon 2946 3784 . + . ID=Phyra87321.1;Parent=Phyra87321;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1823 1 3791 scaffold_1823 . repeat_region 982 1022 . ? . description=trf scaffold_1823 . repeat_region 1338 1485 . ? . description=trf scaffold_1823 . repeat_region 1809 2644 . ? . description=dust scaffold_1823 . repeat_region 3143 3162 . ? . description=trf scaffold_1823 ensembl protein_coding_gene 241 1250 . - . ID=Phyra87319;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1823000001;logic_name=jgi_phyra1 scaffold_1823 ensembl transcript 241 1250 . - . ID=Phyra87319;Parent=Phyra87319;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1823 . CDS 241 889 . - 0 ID=Phyra87319;Parent=Phyra87319;rank=3 scaffold_1823 . exon 241 889 . - . ID=Phyra87319.3;Parent=Phyra87319;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1823 . CDS 918 1035 . - 0 ID=Phyra87319;Parent=Phyra87319;rank=2 scaffold_1823 . exon 918 1035 . - . ID=Phyra87319.2;Parent=Phyra87319;constitutive=1;ensembl_phase=2;rank=2 scaffold_1823 . CDS 1222 1250 . - 0 ID=Phyra87319;Parent=Phyra87319;rank=1 scaffold_1823 . exon 1222 1250 . - . ID=Phyra87319.1;Parent=Phyra87319;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1835 1 3792 scaffold_1835 . repeat_region 1689 2609 . ? . description=dust scaffold_1835 . biological_region 3154 3156 0.999 - . logic_name=eponine scaffold_1835 ensembl protein_coding_gene 8 328 . + . ID=Phyra87332;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1835000001;logic_name=jgi_phyra1 scaffold_1835 ensembl transcript 8 328 . + . ID=Phyra87332;Parent=Phyra87332;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1835 . CDS 8 328 . + 0 ID=Phyra87332;Parent=Phyra87332;rank=1 scaffold_1835 . exon 8 328 . + . ID=Phyra87332.1;Parent=Phyra87332;constitutive=1;rank=1 scaffold_1835 ensembl protein_coding_gene 525 1388 . + . ID=Phyra87333;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1835000002;logic_name=jgi_phyra1 scaffold_1835 ensembl transcript 525 1388 . + . ID=Phyra87333;Parent=Phyra87333;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1835 . CDS 525 1388 . + 0 ID=Phyra87333;Parent=Phyra87333;rank=1 scaffold_1835 . exon 525 1388 . + . ID=Phyra87333.1;Parent=Phyra87333;constitutive=1;rank=1 scaffold_1835 ensembl protein_coding_gene 2659 3027 . + . ID=Phyra87334;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1835000003;logic_name=jgi_phyra1 scaffold_1835 ensembl transcript 2659 3027 . + . ID=Phyra87334;Parent=Phyra87334;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1835 . CDS 2659 3027 . + 0 ID=Phyra87334;Parent=Phyra87334;rank=1 scaffold_1835 . exon 2659 3027 . + . ID=Phyra87334.1;Parent=Phyra87334;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1925 1 3793 scaffold_1925 . biological_region 1100 1103 0.999 - . logic_name=eponine scaffold_1925 . repeat_region 1849 2434 . ? . description=dust scaffold_1925 . repeat_region 2790 2799 . ? . description=dust scaffold_1925 . biological_region 3494 3498 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1793 1 3796 scaffold_1793 . repeat_region 693 992 . + . description=GypsyPi-1c_LTR ##gff-version 3 ##sequence-region scaffold_1819 1 3797 scaffold_1819 ensembl protein_coding_gene 1864 3739 . - . ID=Phyra72515;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1819000001;logic_name=jgi_phyra1 scaffold_1819 ensembl transcript 1864 3739 . - . ID=Phyra72515;Parent=Phyra72515;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1819 . CDS 1864 2198 . - 0 ID=Phyra72515;Parent=Phyra72515;rank=3 scaffold_1819 . exon 1864 2198 . - . ID=Phyra72515.3;Parent=Phyra72515;constitutive=1;ensembl_phase=1;rank=3 scaffold_1819 . CDS 2284 3592 . - 0 ID=Phyra72515;Parent=Phyra72515;rank=2 scaffold_1819 . exon 2284 3592 . - . ID=Phyra72515.2;Parent=Phyra72515;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1819 . CDS 3629 3739 . - 0 ID=Phyra72515;Parent=Phyra72515;rank=1 scaffold_1819 . exon 3629 3739 . - . ID=Phyra72515.1;Parent=Phyra72515;constitutive=1;rank=1 scaffold_1819 ensembl protein_coding_gene 85 1522 . - . ID=Phyra87317;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1819000001;logic_name=jgi_phyra1 scaffold_1819 ensembl transcript 85 1522 . - . ID=Phyra87317;Parent=Phyra87317;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1819 . CDS 85 1522 . - 0 ID=Phyra87317;Parent=Phyra87317;rank=1 scaffold_1819 . exon 85 1522 . - . ID=Phyra87317.1;Parent=Phyra87317;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1965 1 3802 scaffold_1965 . repeat_region 143 151 . ? . description=dust scaffold_1965 . repeat_region 1508 2886 . ? . description=dust scaffold_1965 . biological_region 3359 3361 0.999 - . logic_name=eponine scaffold_1965 . biological_region 3544 3546 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1817 1 3805 scaffold_1817 . repeat_region 75 105 . ? . description=trf scaffold_1817 . repeat_region 1380 2845 . ? . description=dust scaffold_1817 . biological_region 2890 2894 0.999 + . logic_name=eponine scaffold_1817 ensembl protein_coding_gene 15 1305 . - . ID=Phyra87315;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1817000001;logic_name=jgi_phyra1 scaffold_1817 ensembl transcript 15 1305 . - . ID=Phyra87315;Parent=Phyra87315;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1817 . CDS 15 1305 . - 0 ID=Phyra87315;Parent=Phyra87315;rank=1 scaffold_1817 . exon 15 1305 . - . ID=Phyra87315.1;Parent=Phyra87315;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1817 ensembl protein_coding_gene 2963 3773 . + . ID=Phyra87316;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1817000002;logic_name=jgi_phyra1 scaffold_1817 ensembl transcript 2963 3773 . + . ID=Phyra87316;Parent=Phyra87316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1817 . CDS 2963 3773 . + 0 ID=Phyra87316;Parent=Phyra87316;rank=1 scaffold_1817 . exon 2963 3773 . + . ID=Phyra87316.1;Parent=Phyra87316;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1815 1 3808 scaffold_1815 . repeat_region 675 738 . ? . description=trf scaffold_1815 . repeat_region 837 883 . ? . description=trf scaffold_1815 . repeat_region 1011 1032 . ? . description=trf scaffold_1815 . repeat_region 1354 2557 . ? . description=dust scaffold_1815 ensembl protein_coding_gene 13 549 . + . ID=Phyra43317;biotype=protein_coding;external_name=gwEuk.1815.6.1;logic_name=jgi_phyra1 scaffold_1815 ensembl transcript 13 549 . + . ID=Phyra43317;Parent=Phyra43317;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1815 . CDS 13 549 . + 0 ID=Phyra43317;Parent=Phyra43317;rank=1 scaffold_1815 . exon 13 549 . + . ID=Phyra43317.1;Parent=Phyra43317;constitutive=1;rank=1 scaffold_1815 ensembl protein_coding_gene 2603 3780 . - . ID=Phyra87313;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1815000002;logic_name=jgi_phyra1 scaffold_1815 ensembl transcript 2603 3780 . - . ID=Phyra87313;Parent=Phyra87313;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1815 . CDS 2603 2636 . - 0 ID=Phyra87313;Parent=Phyra87313;rank=2 scaffold_1815 . exon 2603 2636 . - . ID=Phyra87313.2;Parent=Phyra87313;constitutive=1;ensembl_phase=2;rank=2 scaffold_1815 . CDS 2705 3780 . - 0 ID=Phyra87313;Parent=Phyra87313;rank=1 scaffold_1815 . exon 2705 3780 . - . ID=Phyra87313.1;Parent=Phyra87313;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1816 1 3808 scaffold_1816 . repeat_region 579 621 . ? . description=trf scaffold_1816 . repeat_region 1165 2415 . ? . description=dust scaffold_1816 . repeat_region 3308 3350 . ? . description=trf scaffold_1816 . repeat_region 3448 3494 . ? . description=trf scaffold_1816 ensembl protein_coding_gene 47 3804 . + . ID=Phyra87314;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1816000001;logic_name=jgi_phyra1 scaffold_1816 ensembl transcript 47 3804 . + . ID=Phyra87314;Parent=Phyra87314;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1816 . CDS 47 500 . + 0 ID=Phyra87314;Parent=Phyra87314;rank=1 scaffold_1816 . exon 47 500 . + . ID=Phyra87314.1;Parent=Phyra87314;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1816 . CDS 813 1150 . + 0 ID=Phyra87314;Parent=Phyra87314;rank=2 scaffold_1816 . exon 813 1150 . + . ID=Phyra87314.2;Parent=Phyra87314;constitutive=1;ensembl_phase=1;rank=2 scaffold_1816 . CDS 2457 3253 . + 0 ID=Phyra87314;Parent=Phyra87314;rank=3 scaffold_1816 . exon 2457 3253 . + . ID=Phyra87314.3;Parent=Phyra87314;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1816 . CDS 3592 3804 . + 0 ID=Phyra87314;Parent=Phyra87314;rank=4 scaffold_1816 . exon 3592 3804 . + . ID=Phyra87314.4;Parent=Phyra87314;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_1812 1 3809 scaffold_1812 . repeat_region 694 1054 . + . description=GypsyPi-1c_I-int scaffold_1812 . repeat_region 1674 2623 . ? . description=dust scaffold_1812 . repeat_region 2726 2947 . + . description=GypsyPi-1c_I-int scaffold_1812 . repeat_region 3351 3406 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1813 1 3810 scaffold_1813 . biological_region 254 255 0.999 + . logic_name=eponine scaffold_1813 . biological_region 2339 2342 0.999 + . logic_name=eponine scaffold_1813 . biological_region 2384 2389 0.999 + . logic_name=eponine scaffold_1813 . biological_region 2586 2588 0.999 + . logic_name=eponine scaffold_1813 . biological_region 2608 2614 0.999 + . logic_name=eponine scaffold_1813 . biological_region 2675 2680 0.999 + . logic_name=eponine scaffold_1813 ensembl protein_coding_gene 1657 2799 . - . ID=Phyra72514;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1813000001;logic_name=jgi_phyra1 scaffold_1813 ensembl transcript 1657 2799 . - . ID=Phyra72514;Parent=Phyra72514;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1813 . CDS 1657 2799 . - 0 ID=Phyra72514;Parent=Phyra72514;rank=1 scaffold_1813 . exon 1657 2799 . - . ID=Phyra72514.1;Parent=Phyra72514;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1810 1 3811 scaffold_1810 . repeat_region 990 1981 . ? . description=dust scaffold_1810 ensembl protein_coding_gene 2753 3799 . + . ID=Phyra87309;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1810000001;logic_name=jgi_phyra1 scaffold_1810 ensembl transcript 2753 3799 . + . ID=Phyra87309;Parent=Phyra87309;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1810 . CDS 2753 3799 . + 0 ID=Phyra87309;Parent=Phyra87309;rank=1 scaffold_1810 . exon 2753 3799 . + . ID=Phyra87309.1;Parent=Phyra87309;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1927 1 3811 scaffold_1927 . repeat_region 478 499 . ? . description=trf scaffold_1927 . repeat_region 1442 2429 . ? . description=dust scaffold_1927 . repeat_region 3006 3048 . ? . description=trf scaffold_1927 ensembl protein_coding_gene 6 2723 . - . ID=Phyra87396;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1927000001;logic_name=jgi_phyra1 scaffold_1927 ensembl transcript 6 2723 . - . ID=Phyra87396;Parent=Phyra87396;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1927 . CDS 6 1411 . - 0 ID=Phyra87396;Parent=Phyra87396;rank=2 scaffold_1927 . exon 6 1411 . - . ID=Phyra87396.2;Parent=Phyra87396;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1927 . CDS 2487 2723 . - 0 ID=Phyra87396;Parent=Phyra87396;rank=1 scaffold_1927 . exon 2487 2723 . - . ID=Phyra87396.1;Parent=Phyra87396;constitutive=1;rank=1 scaffold_1927 ensembl protein_coding_gene 3253 3782 . + . ID=Phyra87397;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1927000002;logic_name=jgi_phyra1 scaffold_1927 ensembl transcript 3253 3782 . + . ID=Phyra87397;Parent=Phyra87397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1927 . CDS 3253 3782 . + 0 ID=Phyra87397;Parent=Phyra87397;rank=1 scaffold_1927 . exon 3253 3782 . + . ID=Phyra87397.1;Parent=Phyra87397;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1806 1 3812 scaffold_1806 . repeat_region 1355 2091 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1811 1 3812 scaffold_1811 . repeat_region 1420 2482 . ? . description=dust scaffold_1811 . biological_region 3073 3078 0.999 + . logic_name=eponine scaffold_1811 . repeat_region 3426 3505 . ? . description=trf scaffold_1811 . biological_region 3446 3448 0.999 + . logic_name=eponine scaffold_1811 . biological_region 3569 3573 0.999 - . logic_name=eponine scaffold_1811 ensembl protein_coding_gene 2848 3761 . - . ID=Phyra87310;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1811000001;logic_name=jgi_phyra1 scaffold_1811 ensembl transcript 2848 3761 . - . ID=Phyra87310;Parent=Phyra87310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1811 . CDS 2848 3759 . - 0 ID=Phyra87310;Parent=Phyra87310;rank=1 scaffold_1811 . exon 2848 3761 . - . ID=Phyra87310.1;Parent=Phyra87310;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1839 1 3813 scaffold_1839 . biological_region 235 239 0.999 + . logic_name=eponine scaffold_1839 . biological_region 305 307 0.999 - . logic_name=eponine scaffold_1839 . biological_region 403 411 0.999 - . logic_name=eponine scaffold_1839 . repeat_region 1388 1407 . ? . description=trf scaffold_1839 . repeat_region 1880 2783 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1814 1 3814 scaffold_1814 . repeat_region 1012 2367 . ? . description=dust scaffold_1814 . repeat_region 3798 3814 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2022 1 3815 scaffold_2022 . repeat_region 706 775 . - . description=GypsyPi-1c_I-int scaffold_2022 . repeat_region 920 983 . - . description=GypsyPi-1c_I-int scaffold_2022 . repeat_region 1775 2332 . ? . description=dust scaffold_2022 . biological_region 2571 2576 0.999 - . logic_name=eponine scaffold_2022 . biological_region 2665 2666 0.999 + . logic_name=eponine scaffold_2022 . biological_region 2756 2759 0.999 - . logic_name=eponine scaffold_2022 . repeat_region 3471 3490 . ? . description=trf scaffold_2022 . repeat_region 3471 3490 . ? . description=dust scaffold_2022 . biological_region 3663 3664 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1805 1 3816 scaffold_1805 . repeat_region 1849 2407 . ? . description=dust scaffold_1805 . repeat_region 3139 3166 . ? . description=trf scaffold_1805 . repeat_region 3343 3371 . ? . description=trf scaffold_1805 ensembl protein_coding_gene 2558 3259 . + . ID=Phyra87306;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1805000001;logic_name=jgi_phyra1 scaffold_1805 ensembl transcript 2558 3259 . + . ID=Phyra87306;Parent=Phyra87306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1805 . CDS 2558 3259 . + 0 ID=Phyra87306;Parent=Phyra87306;rank=1 scaffold_1805 . exon 2558 3259 . + . ID=Phyra87306.1;Parent=Phyra87306;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1801 1 3817 scaffold_1801 . repeat_region 1 610 . ? . description=trf scaffold_1801 . repeat_region 611 1065 . ? . description=trf scaffold_1801 . repeat_region 1242 1923 . ? . description=trf scaffold_1801 . repeat_region 1925 2181 . ? . description=dust scaffold_1801 . repeat_region 2182 2710 . ? . description=trf scaffold_1801 . repeat_region 2182 2710 . ? . description=trf scaffold_1801 . biological_region 2465 2465 0.999 - . logic_name=eponine scaffold_1801 . biological_region 2599 2601 0.999 - . logic_name=eponine scaffold_1801 ensembl protein_coding_gene 10 3240 . - . ID=Phyra87301;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1801000001;logic_name=jgi_phyra1 scaffold_1801 ensembl transcript 10 3240 . - . ID=Phyra87301;Parent=Phyra87301;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1801 . CDS 10 414 . - 0 ID=Phyra87301;Parent=Phyra87301;rank=3 scaffold_1801 . exon 10 414 . - . ID=Phyra87301.3;Parent=Phyra87301;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1801 . CDS 633 1907 . - 0 ID=Phyra87301;Parent=Phyra87301;rank=2 scaffold_1801 . exon 633 1907 . - . ID=Phyra87301.2;Parent=Phyra87301;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1801 . CDS 2196 3240 . - 0 ID=Phyra87301;Parent=Phyra87301;rank=1 scaffold_1801 . exon 2196 3240 . - . ID=Phyra87301.1;Parent=Phyra87301;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1802 1 3817 scaffold_1802 . biological_region 253 254 0.999 - . logic_name=eponine scaffold_1802 . biological_region 288 289 0.999 - . logic_name=eponine scaffold_1802 . biological_region 301 308 0.999 - . logic_name=eponine scaffold_1802 . biological_region 317 317 0.999 - . logic_name=eponine scaffold_1802 . biological_region 327 330 0.999 + . logic_name=eponine scaffold_1802 . biological_region 358 361 0.999 + . logic_name=eponine scaffold_1802 . repeat_region 1269 2302 . ? . description=dust scaffold_1802 . biological_region 2680 2683 0.999 - . logic_name=eponine scaffold_1802 . biological_region 2711 2714 0.999 - . logic_name=eponine scaffold_1802 . biological_region 2724 2724 0.999 + . logic_name=eponine scaffold_1802 . biological_region 2733 2740 0.999 + . logic_name=eponine scaffold_1802 . biological_region 2752 2753 0.999 + . logic_name=eponine scaffold_1802 . biological_region 2787 2788 0.999 + . logic_name=eponine scaffold_1802 ensembl protein_coding_gene 2304 2963 . + . ID=Phyra43298;biotype=protein_coding;external_name=gwEuk.1802.5.1;logic_name=jgi_phyra1 scaffold_1802 ensembl transcript 2304 2963 . + . ID=Phyra43298;Parent=Phyra43298;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1802 . CDS 2304 2963 . + 0 ID=Phyra43298;Parent=Phyra43298;rank=1 scaffold_1802 . exon 2304 2963 . + . ID=Phyra43298.1;Parent=Phyra43298;constitutive=1;rank=1 scaffold_1802 ensembl protein_coding_gene 53 1243 . - . ID=Phyra72513;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1802000001;logic_name=jgi_phyra1 scaffold_1802 ensembl transcript 53 1243 . - . ID=Phyra72513;Parent=Phyra72513;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1802 . CDS 53 1243 . - 0 ID=Phyra72513;Parent=Phyra72513;rank=1 scaffold_1802 . exon 53 1243 . - . ID=Phyra72513.1;Parent=Phyra72513;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1804 1 3817 scaffold_1804 . repeat_region 162 172 . ? . description=dust scaffold_1804 . repeat_region 1938 1950 . ? . description=dust scaffold_1804 . repeat_region 2227 2499 . ? . description=dust scaffold_1804 . biological_region 3075 3080 0.999 - . logic_name=eponine scaffold_1804 ensembl protein_coding_gene 2600 3776 . + . ID=Phyra87305;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1804000001;logic_name=jgi_phyra1 scaffold_1804 ensembl transcript 2600 3776 . + . ID=Phyra87305;Parent=Phyra87305;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1804 . CDS 2600 3479 . + 0 ID=Phyra87305;Parent=Phyra87305;rank=1 scaffold_1804 . exon 2600 3479 . + . ID=Phyra87305.1;Parent=Phyra87305;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1804 . CDS 3534 3551 . + 0 ID=Phyra87305;Parent=Phyra87305;rank=2 scaffold_1804 . exon 3534 3551 . + . ID=Phyra87305.2;Parent=Phyra87305;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1804 . CDS 3576 3776 . + 0 ID=Phyra87305;Parent=Phyra87305;rank=3 scaffold_1804 . exon 3576 3776 . + . ID=Phyra87305.3;Parent=Phyra87305;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1803 1 3820 scaffold_1803 . repeat_region 945 990 . ? . description=trf scaffold_1803 . repeat_region 1095 1137 . ? . description=trf scaffold_1803 . repeat_region 1691 2277 . ? . description=dust scaffold_1803 . biological_region 3416 3416 0.999 + . logic_name=eponine scaffold_1803 ensembl protein_coding_gene 13 653 . - . ID=Phyra87304;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1803000001;logic_name=jgi_phyra1 scaffold_1803 ensembl transcript 13 653 . - . ID=Phyra87304;Parent=Phyra87304;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1803 . CDS 13 653 . - 0 ID=Phyra87304;Parent=Phyra87304;rank=1 scaffold_1803 . exon 13 653 . - . ID=Phyra87304.1;Parent=Phyra87304;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1799 1 3821 scaffold_1799 . biological_region 133 135 0.999 - . logic_name=eponine scaffold_1799 ensembl pseudogene 2117 2481 . - . ID=Phyra43037;biotype=pseudogene;external_name=gwEuk.1799.5.1;logic_name=jgi_phyra1 scaffold_1799 ensembl pseudogene 2117 2481 . - . ID=Phyra43037;Parent=Phyra43037;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1799 . exon 2117 2481 . - . ID=Phyra43037.1;Parent=Phyra43037;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1796 1 3822 scaffold_1796 . biological_region 699 703 0.999 + . logic_name=eponine scaffold_1796 . biological_region 778 780 0.999 - . logic_name=eponine scaffold_1796 . biological_region 1842 1842 0.999 + . logic_name=eponine scaffold_1796 . biological_region 2309 2313 0.999 - . logic_name=eponine scaffold_1796 . biological_region 2367 2368 0.999 + . logic_name=eponine scaffold_1796 . repeat_region 3313 3338 . ? . description=trf scaffold_1796 . repeat_region 3313 3338 . ? . description=dust scaffold_1796 ensembl protein_coding_gene 47 1410 . + . ID=Phyra87296;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1796000001;logic_name=jgi_phyra1 scaffold_1796 ensembl transcript 47 1410 . + . ID=Phyra87296;Parent=Phyra87296;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1796 . exon 47 1410 . + . ID=Phyra87296.1;Parent=Phyra87296;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1796 . CDS 49 1410 . + 0 ID=Phyra87296;Parent=Phyra87296;rank=1 scaffold_1796 ensembl protein_coding_gene 1671 2606 . - . ID=Phyra87297;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1796000002;logic_name=jgi_phyra1 scaffold_1796 ensembl transcript 1671 2606 . - . ID=Phyra87297;Parent=Phyra87297;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1796 . CDS 1671 2606 . - 0 ID=Phyra87297;Parent=Phyra87297;rank=1 scaffold_1796 . exon 1671 2606 . - . ID=Phyra87297.1;Parent=Phyra87297;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1794 1 3824 scaffold_1794 . repeat_region 1624 1666 . ? . description=trf scaffold_1794 . repeat_region 2317 2436 . ? . description=dust scaffold_1794 ensembl protein_coding_gene 561 1018 . + . ID=Phyra87295;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1794000001;logic_name=jgi_phyra1 scaffold_1794 ensembl transcript 561 1018 . + . ID=Phyra87295;Parent=Phyra87295;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1794 . CDS 561 795 . + 0 ID=Phyra87295;Parent=Phyra87295;rank=1 scaffold_1794 . exon 561 795 . + . ID=Phyra87295.1;Parent=Phyra87295;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1794 . CDS 819 1018 . + 0 ID=Phyra87295;Parent=Phyra87295;rank=2 scaffold_1794 . exon 819 1018 . + . ID=Phyra87295.2;Parent=Phyra87295;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1798 1 3824 scaffold_1798 . repeat_region 1641 2406 . ? . description=dust scaffold_1798 ensembl protein_coding_gene 62 592 . + . ID=Phyra87298;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1798000001;logic_name=jgi_phyra1 scaffold_1798 ensembl transcript 62 592 . + . ID=Phyra87298;Parent=Phyra87298;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1798 . CDS 62 592 . + 0 ID=Phyra87298;Parent=Phyra87298;rank=1 scaffold_1798 . exon 62 592 . + . ID=Phyra87298.1;Parent=Phyra87298;constitutive=1;rank=1 scaffold_1798 ensembl protein_coding_gene 793 3542 . - . ID=Phyra87299;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1798000002;logic_name=jgi_phyra1 scaffold_1798 ensembl transcript 793 3542 . - . ID=Phyra87299;Parent=Phyra87299;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1798 . CDS 793 1602 . - 0 ID=Phyra87299;Parent=Phyra87299;rank=2 scaffold_1798 . exon 793 1602 . - . ID=Phyra87299.2;Parent=Phyra87299;constitutive=1;rank=2 scaffold_1798 . CDS 2460 3542 . - 0 ID=Phyra87299;Parent=Phyra87299;rank=1 scaffold_1798 . exon 2460 3542 . - . ID=Phyra87299.1;Parent=Phyra87299;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1792 1 3825 scaffold_1792 . repeat_region 2926 3019 . ? . description=trf scaffold_1792 . repeat_region 3008 3066 . ? . description=trf scaffold_1792 . repeat_region 3432 3439 . ? . description=dust scaffold_1792 . biological_region 3801 3802 0.999 - . logic_name=eponine scaffold_1792 ensembl protein_coding_gene 2030 3724 . + . ID=Phyra87294;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1792000001;logic_name=jgi_phyra1 scaffold_1792 ensembl transcript 2030 3724 . + . ID=Phyra87294;Parent=Phyra87294;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1792 . CDS 2030 2261 . + 0 ID=Phyra87294;Parent=Phyra87294;rank=1 scaffold_1792 . exon 2030 2261 . + . ID=Phyra87294.1;Parent=Phyra87294;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1792 . CDS 2323 2505 . + 0 ID=Phyra87294;Parent=Phyra87294;rank=2 scaffold_1792 . exon 2323 2505 . + . ID=Phyra87294.2;Parent=Phyra87294;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1792 . CDS 2593 2709 . + 0 ID=Phyra87294;Parent=Phyra87294;rank=3 scaffold_1792 . exon 2593 2709 . + . ID=Phyra87294.3;Parent=Phyra87294;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1792 . CDS 2777 3088 . + 0 ID=Phyra87294;Parent=Phyra87294;rank=4 scaffold_1792 . exon 2777 3088 . + . ID=Phyra87294.4;Parent=Phyra87294;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1792 . CDS 3189 3724 . + 0 ID=Phyra87294;Parent=Phyra87294;rank=5 scaffold_1792 . exon 3189 3724 . + . ID=Phyra87294.5;Parent=Phyra87294;constitutive=1;ensembl_phase=1;rank=5 ##gff-version 3 ##sequence-region scaffold_1795 1 3825 scaffold_1795 . repeat_region 1329 2224 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1831 1 3828 scaffold_1831 . repeat_region 105 888 . - . description=GypsyPi-1c_I-int scaffold_1831 . biological_region 1412 1418 0.999 - . logic_name=eponine scaffold_1831 . biological_region 1444 1444 0.999 + . logic_name=eponine scaffold_1831 . biological_region 1452 1454 0.999 + . logic_name=eponine scaffold_1831 . biological_region 1471 1471 0.999 + . logic_name=eponine scaffold_1831 . biological_region 1489 1492 0.999 + . logic_name=eponine scaffold_1831 . biological_region 1515 1520 0.999 - . logic_name=eponine scaffold_1831 . biological_region 1566 1572 0.999 - . logic_name=eponine scaffold_1831 . repeat_region 2931 2980 . ? . description=dust scaffold_1831 ensembl protein_coding_gene 152 2004 . - . ID=Phyra87330;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1831000001;logic_name=jgi_phyra1 scaffold_1831 ensembl transcript 152 2004 . - . ID=Phyra87330;Parent=Phyra87330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1831 . CDS 152 185 . - 0 ID=Phyra87330;Parent=Phyra87330;rank=5 scaffold_1831 . exon 152 185 . - . ID=Phyra87330.5;Parent=Phyra87330;constitutive=1;ensembl_phase=2;rank=5 scaffold_1831 . CDS 434 729 . - 0 ID=Phyra87330;Parent=Phyra87330;rank=4 scaffold_1831 . exon 434 729 . - . ID=Phyra87330.4;Parent=Phyra87330;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1831 . CDS 756 1356 . - 0 ID=Phyra87330;Parent=Phyra87330;rank=3 scaffold_1831 . exon 756 1356 . - . ID=Phyra87330.3;Parent=Phyra87330;constitutive=1;ensembl_phase=2;rank=3 scaffold_1831 . CDS 1446 1608 . - 0 ID=Phyra87330;Parent=Phyra87330;rank=2 scaffold_1831 . exon 1446 1608 . - . ID=Phyra87330.2;Parent=Phyra87330;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1831 . CDS 1977 2004 . - 0 ID=Phyra87330;Parent=Phyra87330;rank=1 scaffold_1831 . exon 1977 2004 . - . ID=Phyra87330.1;Parent=Phyra87330;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1847 1 3829 scaffold_1847 . repeat_region 1829 2776 . ? . description=dust scaffold_1847 ensembl protein_coding_gene 786 3816 . + . ID=Phyra87340;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1847000001;logic_name=jgi_phyra1 scaffold_1847 ensembl transcript 786 3816 . + . ID=Phyra87340;Parent=Phyra87340;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1847 . CDS 786 1784 . + 0 ID=Phyra87340;Parent=Phyra87340;rank=1 scaffold_1847 . exon 786 1784 . + . ID=Phyra87340.1;Parent=Phyra87340;constitutive=1;rank=1 scaffold_1847 . CDS 2785 3816 . + 0 ID=Phyra87340;Parent=Phyra87340;rank=2 scaffold_1847 . exon 2785 3816 . + . ID=Phyra87340.2;Parent=Phyra87340;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1790 1 3830 scaffold_1790 . repeat_region 1327 2658 . ? . description=dust scaffold_1790 . biological_region 3226 3229 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1791 1 3830 scaffold_1791 . biological_region 1079 1080 0.999 - . logic_name=eponine scaffold_1791 . biological_region 1093 1096 0.999 + . logic_name=eponine scaffold_1791 . repeat_region 1939 2697 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1788 1 3833 scaffold_1788 . repeat_region 648 690 . ? . description=trf scaffold_1788 . repeat_region 1106 1969 . ? . description=dust scaffold_1788 . repeat_region 2250 2271 . ? . description=trf scaffold_1788 . biological_region 2546 2549 0.999 - . logic_name=eponine scaffold_1788 . repeat_region 3381 3423 . ? . description=trf scaffold_1788 ensembl protein_coding_gene 12 3791 . - . ID=Phyra87290;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1788000001;logic_name=jgi_phyra1 scaffold_1788 ensembl transcript 12 3791 . - . ID=Phyra87290;Parent=Phyra87290;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1788 . CDS 12 337 . - 0 ID=Phyra87290;Parent=Phyra87290;rank=4 scaffold_1788 . exon 12 337 . - . ID=Phyra87290.4;Parent=Phyra87290;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_1788 . CDS 745 1097 . - 0 ID=Phyra87290;Parent=Phyra87290;rank=3 scaffold_1788 . exon 745 1097 . - . ID=Phyra87290.3;Parent=Phyra87290;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1788 . CDS 1972 3158 . - 0 ID=Phyra87290;Parent=Phyra87290;rank=2 scaffold_1788 . exon 1972 3158 . - . ID=Phyra87290.2;Parent=Phyra87290;constitutive=1;ensembl_phase=1;rank=2 scaffold_1788 . CDS 3545 3791 . - 0 ID=Phyra87290;Parent=Phyra87290;rank=1 scaffold_1788 . exon 3545 3791 . - . ID=Phyra87290.1;Parent=Phyra87290;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1883 1 3833 scaffold_1883 . repeat_region 113 159 . ? . description=trf scaffold_1883 . repeat_region 1023 1065 . ? . description=trf scaffold_1883 . repeat_region 1602 2709 . ? . description=dust scaffold_1883 . biological_region 2757 2761 0.999 + . logic_name=eponine scaffold_1883 . biological_region 2784 2784 0.999 + . logic_name=eponine scaffold_1883 . repeat_region 3410 3452 . ? . description=trf scaffold_1883 . repeat_region 3551 3597 . ? . description=trf scaffold_1883 ensembl protein_coding_gene 285 929 . + . ID=Phyra72521;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1883000001;logic_name=jgi_phyra1 scaffold_1883 ensembl transcript 285 929 . + . ID=Phyra72521;Parent=Phyra72521;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1883 . CDS 285 929 . + 0 ID=Phyra72521;Parent=Phyra72521;rank=1 scaffold_1883 . exon 285 929 . + . ID=Phyra72521.1;Parent=Phyra72521;constitutive=1;rank=1 scaffold_1883 ensembl protein_coding_gene 1337 3277 . - . ID=Phyra87359;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1883000002;logic_name=jgi_phyra1 scaffold_1883 ensembl transcript 1337 3277 . - . ID=Phyra87359;Parent=Phyra87359;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1883 . CDS 1337 1560 . - 0 ID=Phyra87359;Parent=Phyra87359;rank=2 scaffold_1883 . exon 1337 1560 . - . ID=Phyra87359.2;Parent=Phyra87359;constitutive=1;ensembl_phase=1;rank=2 scaffold_1883 . CDS 2746 3277 . - 0 ID=Phyra87359;Parent=Phyra87359;rank=1 scaffold_1883 . exon 2746 3277 . - . ID=Phyra87359.1;Parent=Phyra87359;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1784 1 3834 scaffold_1784 . repeat_region 531 1228 . - . description=Polinton-1_PI scaffold_1784 . repeat_region 859 866 . ? . description=dust scaffold_1784 . repeat_region 1229 2276 . ? . description=dust scaffold_1784 . repeat_region 2277 3834 . - . description=Polinton-1_PI scaffold_1784 . repeat_region 3079 3087 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1786 1 3835 scaffold_1786 . repeat_region 3 1162 . - . description=GypsyPi-1c_I-int scaffold_1786 . repeat_region 1592 2635 . ? . description=dust scaffold_1786 . biological_region 3462 3466 0.999 - . logic_name=eponine scaffold_1786 ensembl protein_coding_gene 324 1447 . - . ID=Phyra87289;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1786000001;logic_name=jgi_phyra1 scaffold_1786 ensembl transcript 324 1447 . - . ID=Phyra87289;Parent=Phyra87289;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1786 . CDS 324 437 . - 0 ID=Phyra87289;Parent=Phyra87289;rank=4 scaffold_1786 . exon 324 437 . - . ID=Phyra87289.4;Parent=Phyra87289;constitutive=1;rank=4 scaffold_1786 . CDS 501 522 . - 0 ID=Phyra87289;Parent=Phyra87289;rank=3 scaffold_1786 . exon 501 522 . - . ID=Phyra87289.3;Parent=Phyra87289;constitutive=1;ensembl_phase=2;rank=3 scaffold_1786 . CDS 732 878 . - 0 ID=Phyra87289;Parent=Phyra87289;rank=2 scaffold_1786 . exon 732 878 . - . ID=Phyra87289.2;Parent=Phyra87289;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1786 . CDS 975 1447 . - 0 ID=Phyra87289;Parent=Phyra87289;rank=1 scaffold_1786 . exon 975 1447 . - . ID=Phyra87289.1;Parent=Phyra87289;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1827 1 3835 scaffold_1827 . repeat_region 1072 1768 . ? . description=dust scaffold_1827 . biological_region 1860 1864 0.999 + . logic_name=eponine scaffold_1827 . repeat_region 2934 2983 . ? . description=dust scaffold_1827 ensembl protein_coding_gene 82 627 . - . ID=Phyra43344;biotype=protein_coding;external_name=gwEuk.1827.3.1;logic_name=jgi_phyra1 scaffold_1827 ensembl transcript 82 627 . - . ID=Phyra43344;Parent=Phyra43344;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1827 . CDS 82 627 . - 0 ID=Phyra43344;Parent=Phyra43344;rank=1 scaffold_1827 . exon 82 627 . - . ID=Phyra43344.1;Parent=Phyra43344;constitutive=1;rank=1 scaffold_1827 ensembl protein_coding_gene 1796 2563 . + . ID=Phyra87326;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1827000002;logic_name=jgi_phyra1 scaffold_1827 ensembl transcript 1796 2563 . + . ID=Phyra87326;Parent=Phyra87326;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1827 . CDS 1796 2563 . + 0 ID=Phyra87326;Parent=Phyra87326;rank=1 scaffold_1827 . exon 1796 2563 . + . ID=Phyra87326.1;Parent=Phyra87326;constitutive=1;rank=1 scaffold_1827 ensembl protein_coding_gene 3105 3818 . + . ID=Phyra87327;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1827000003;logic_name=jgi_phyra1 scaffold_1827 ensembl transcript 3105 3818 . + . ID=Phyra87327;Parent=Phyra87327;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1827 . CDS 3105 3818 . + 0 ID=Phyra87327;Parent=Phyra87327;rank=1 scaffold_1827 . exon 3105 3818 . + . ID=Phyra87327.1;Parent=Phyra87327;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1785 1 3836 scaffold_1785 . repeat_region 1841 2572 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1626 1 3838 scaffold_1626 . biological_region 1220 1222 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1782 1 3838 scaffold_1782 . repeat_region 168 1769 . + . description=GypsyPi-1c_I-int scaffold_1782 . repeat_region 1809 2784 . ? . description=dust scaffold_1782 . biological_region 3688 3693 0.999 + . logic_name=eponine scaffold_1782 . biological_region 3782 3783 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1783 1 3839 scaffold_1783 . repeat_region 1095 2264 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1780 1 3841 scaffold_1780 . repeat_region 701 708 . ? . description=dust scaffold_1780 . repeat_region 1226 1267 . ? . description=trf scaffold_1780 . repeat_region 1728 2243 . ? . description=dust scaffold_1780 . biological_region 3815 3815 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1781 1 3841 scaffold_1781 . repeat_region 1 758 . - . description=Polinton-1_PI scaffold_1781 . repeat_region 760 814 . ? . description=trf scaffold_1781 . repeat_region 831 850 . ? . description=trf scaffold_1781 . repeat_region 889 1525 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1800 1 3843 scaffold_1800 . repeat_region 7 644 . + . description=GypsyPi-1c_I-int scaffold_1800 . biological_region 688 690 0.999 - . logic_name=eponine scaffold_1800 . repeat_region 768 2290 . ? . description=dust scaffold_1800 ensembl protein_coding_gene 178 564 . + . ID=Phyra43292;biotype=protein_coding;external_name=gwEuk.1800.1.1;logic_name=jgi_phyra1 scaffold_1800 ensembl transcript 178 564 . + . ID=Phyra43292;Parent=Phyra43292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1800 . CDS 178 564 . + 0 ID=Phyra43292;Parent=Phyra43292;rank=1 scaffold_1800 . exon 178 564 . + . ID=Phyra43292.1;Parent=Phyra43292;constitutive=1;rank=1 scaffold_1800 ensembl protein_coding_gene 3282 3823 . + . ID=Phyra87300;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1800000001;logic_name=jgi_phyra1 scaffold_1800 ensembl transcript 3282 3823 . + . ID=Phyra87300;Parent=Phyra87300;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1800 . CDS 3282 3823 . + 0 ID=Phyra87300;Parent=Phyra87300;rank=1 scaffold_1800 . exon 3282 3823 . + . ID=Phyra87300.1;Parent=Phyra87300;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1777 1 3844 scaffold_1777 . repeat_region 2370 2389 . ? . description=trf scaffold_1777 ensembl protein_coding_gene 1927 3468 . + . ID=Phyra87286;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1777000001;logic_name=jgi_phyra1 scaffold_1777 ensembl transcript 1927 3468 . + . ID=Phyra87286;Parent=Phyra87286;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1777 . CDS 1927 3468 . + 0 ID=Phyra87286;Parent=Phyra87286;rank=1 scaffold_1777 . exon 1927 3468 . + . ID=Phyra87286.1;Parent=Phyra87286;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1778 1 3844 scaffold_1778 . repeat_region 869 918 . ? . description=trf scaffold_1778 . repeat_region 1469 2951 . ? . description=dust scaffold_1778 . biological_region 3307 3311 0.999 + . logic_name=eponine scaffold_1778 . biological_region 3362 3365 0.999 + . logic_name=eponine scaffold_1778 ensembl protein_coding_gene 2997 3714 . - . ID=Phyra87287;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1778000001;logic_name=jgi_phyra1 scaffold_1778 ensembl transcript 2997 3714 . - . ID=Phyra87287;Parent=Phyra87287;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1778 . CDS 2997 2999 . - 0 ID=Phyra87287;Parent=Phyra87287;rank=3 scaffold_1778 . exon 2997 2999 . - . ID=Phyra87287.3;Parent=Phyra87287;constitutive=1;rank=3 scaffold_1778 . CDS 3022 3199 . - 0 ID=Phyra87287;Parent=Phyra87287;rank=2 scaffold_1778 . exon 3022 3199 . - . ID=Phyra87287.2;Parent=Phyra87287;constitutive=1;ensembl_phase=2;rank=2 scaffold_1778 . CDS 3221 3714 . - 0 ID=Phyra87287;Parent=Phyra87287;rank=1 scaffold_1778 . exon 3221 3714 . - . ID=Phyra87287.1;Parent=Phyra87287;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1846 1 3844 scaffold_1846 . repeat_region 1151 2925 . ? . description=dust scaffold_1846 ensembl protein_coding_gene 7 3727 . - . ID=Phyra87339;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1846000001;logic_name=jgi_phyra1 scaffold_1846 ensembl transcript 7 3727 . - . ID=Phyra87339;Parent=Phyra87339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1846 . CDS 7 971 . - 0 ID=Phyra87339;Parent=Phyra87339;rank=2 scaffold_1846 . exon 7 971 . - . ID=Phyra87339.2;Parent=Phyra87339;constitutive=1;ensembl_phase=1;rank=2 scaffold_1846 . CDS 2935 3727 . - 0 ID=Phyra87339;Parent=Phyra87339;rank=1 scaffold_1846 . exon 2935 3727 . - . ID=Phyra87339.1;Parent=Phyra87339;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1928 1 3845 scaffold_1928 . repeat_region 273 315 . ? . description=trf scaffold_1928 . biological_region 1140 1142 0.999 + . logic_name=eponine scaffold_1928 . repeat_region 1254 1284 . ? . description=trf scaffold_1928 . repeat_region 1304 2364 . ? . description=dust scaffold_1928 . repeat_region 3576 3618 . ? . description=trf scaffold_1928 ensembl protein_coding_gene 559 3298 . - . ID=Phyra87398;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1928000001;logic_name=jgi_phyra1 scaffold_1928 ensembl transcript 559 3298 . - . ID=Phyra87398;Parent=Phyra87398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1928 . CDS 559 1218 . - 0 ID=Phyra87398;Parent=Phyra87398;rank=2 scaffold_1928 . exon 559 1218 . - . ID=Phyra87398.2;Parent=Phyra87398;constitutive=1;rank=2 scaffold_1928 . CDS 2384 3298 . - 0 ID=Phyra87398;Parent=Phyra87398;rank=1 scaffold_1928 . exon 2384 3298 . - . ID=Phyra87398.1;Parent=Phyra87398;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1617 1 3848 scaffold_1617 ensembl protein_coding_gene 1185 3834 . - . ID=Phyra87156;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1617000001;logic_name=jgi_phyra1 scaffold_1617 ensembl transcript 1185 3834 . - . ID=Phyra87156;Parent=Phyra87156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1617 . CDS 1185 2615 . - 0 ID=Phyra87156;Parent=Phyra87156;rank=3 scaffold_1617 . exon 1185 2615 . - . ID=Phyra87156.3;Parent=Phyra87156;constitutive=1;rank=3 scaffold_1617 . CDS 2765 2950 . - 0 ID=Phyra87156;Parent=Phyra87156;rank=2 scaffold_1617 . exon 2765 2950 . - . ID=Phyra87156.2;Parent=Phyra87156;constitutive=1;rank=2 scaffold_1617 . CDS 3136 3834 . - 0 ID=Phyra87156;Parent=Phyra87156;rank=1 scaffold_1617 . exon 3136 3834 . - . ID=Phyra87156.1;Parent=Phyra87156;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1776 1 3848 scaffold_1776 . repeat_region 757 2399 . ? . description=dust scaffold_1776 ensembl protein_coding_gene 3159 3806 . - . ID=Phyra72510;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1776000001;logic_name=jgi_phyra1 scaffold_1776 ensembl transcript 3159 3806 . - . ID=Phyra72510;Parent=Phyra72510;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1776 . CDS 3159 3806 . - 0 ID=Phyra72510;Parent=Phyra72510;rank=1 scaffold_1776 . exon 3159 3806 . - . ID=Phyra72510.1;Parent=Phyra72510;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1779 1 3849 scaffold_1779 . biological_region 696 697 0.999 - . logic_name=eponine scaffold_1779 . repeat_region 1039 2336 . ? . description=dust scaffold_1779 . biological_region 2753 2755 0.999 + . logic_name=eponine scaffold_1779 . repeat_region 2820 2899 . ? . description=trf scaffold_1779 . repeat_region 2833 2876 . ? . description=trf scaffold_1779 . biological_region 3046 3047 0.999 + . logic_name=eponine scaffold_1779 . biological_region 3248 3253 0.999 - . logic_name=eponine scaffold_1779 ensembl protein_coding_gene 15 3477 . + . ID=Phyra87288;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1779000001;logic_name=jgi_phyra1 scaffold_1779 ensembl transcript 15 3477 . + . ID=Phyra87288;Parent=Phyra87288;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1779 . CDS 15 785 . + 0 ID=Phyra87288;Parent=Phyra87288;rank=1 scaffold_1779 . exon 15 785 . + . ID=Phyra87288.1;Parent=Phyra87288;constitutive=1;rank=1 scaffold_1779 . CDS 2389 3477 . + 0 ID=Phyra87288;Parent=Phyra87288;rank=2 scaffold_1779 . exon 2389 3477 . + . ID=Phyra87288.2;Parent=Phyra87288;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1807 1 3852 scaffold_1807 . repeat_region 1861 2635 . ? . description=dust scaffold_1807 ensembl protein_coding_gene 999 1439 . + . ID=Phyra87307;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1807000001;logic_name=jgi_phyra1 scaffold_1807 ensembl transcript 999 1439 . + . ID=Phyra87307;Parent=Phyra87307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1807 . CDS 999 1439 . + 0 ID=Phyra87307;Parent=Phyra87307;rank=1 scaffold_1807 . exon 999 1439 . + . ID=Phyra87307.1;Parent=Phyra87307;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1775 1 3853 scaffold_1775 . biological_region 432 434 0.999 + . logic_name=eponine scaffold_1775 . biological_region 615 621 0.999 + . logic_name=eponine scaffold_1775 . biological_region 1818 1822 0.999 - . logic_name=eponine scaffold_1775 . biological_region 1872 1877 0.999 + . logic_name=eponine scaffold_1775 . repeat_region 2504 2703 . ? . description=dust scaffold_1775 ensembl protein_coding_gene 79 1094 . - . ID=Phyra87284;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1775000001;logic_name=jgi_phyra1 scaffold_1775 ensembl transcript 79 1094 . - . ID=Phyra87284;Parent=Phyra87284;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1775 . CDS 79 1094 . - 0 ID=Phyra87284;Parent=Phyra87284;rank=1 scaffold_1775 . exon 79 1094 . - . ID=Phyra87284.1;Parent=Phyra87284;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1772 1 3854 scaffold_1772 . biological_region 1093 1095 0.999 - . logic_name=eponine scaffold_1772 . repeat_region 1596 3268 . ? . description=dust scaffold_1772 . biological_region 3656 3664 0.999 - . logic_name=eponine scaffold_1772 . repeat_region 3658 3854 . ? . description=trf scaffold_1772 . biological_region 3724 3727 0.999 - . logic_name=eponine scaffold_1772 . biological_region 3758 3759 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1773 1 3854 scaffold_1773 . repeat_region 1428 2083 . ? . description=dust scaffold_1773 ensembl protein_coding_gene 3061 3813 . - . ID=Phyra87282;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1773000001;logic_name=jgi_phyra1 scaffold_1773 ensembl transcript 3061 3813 . - . ID=Phyra87282;Parent=Phyra87282;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1773 . CDS 3061 3813 . - 0 ID=Phyra87282;Parent=Phyra87282;rank=1 scaffold_1773 . exon 3061 3813 . - . ID=Phyra87282.1;Parent=Phyra87282;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1929 1 3854 scaffold_1929 . repeat_region 2 1518 . + . description=GypsyPi-1c_I-int scaffold_1929 . repeat_region 1519 2119 . ? . description=dust scaffold_1929 . repeat_region 2181 2402 . + . description=GypsyPi-1c_I-int scaffold_1929 . biological_region 2518 2520 0.999 - . logic_name=eponine scaffold_1929 . repeat_region 2655 2668 . ? . description=dust scaffold_1929 . biological_region 3358 3361 0.999 + . logic_name=eponine scaffold_1929 . biological_region 3451 3451 0.999 - . logic_name=eponine scaffold_1929 . biological_region 3541 3546 0.999 + . logic_name=eponine scaffold_1929 ensembl protein_coding_gene 498 1478 . + . ID=Phyra87399;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1929000001;logic_name=jgi_phyra1 scaffold_1929 ensembl transcript 498 1478 . + . ID=Phyra87399;Parent=Phyra87399;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1929 . CDS 498 1478 . + 0 ID=Phyra87399;Parent=Phyra87399;rank=1 scaffold_1929 . exon 498 1478 . + . ID=Phyra87399.1;Parent=Phyra87399;constitutive=1;rank=1 scaffold_1929 ensembl protein_coding_gene 2419 3804 . - . ID=Phyra87400;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1929000002;logic_name=jgi_phyra1 scaffold_1929 ensembl transcript 2419 3804 . - . ID=Phyra87400;Parent=Phyra87400;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1929 . CDS 2419 3044 . - 0 ID=Phyra87400;Parent=Phyra87400;rank=3 scaffold_1929 . exon 2419 3044 . - . ID=Phyra87400.3;Parent=Phyra87400;constitutive=1;ensembl_phase=1;rank=3 scaffold_1929 . CDS 3069 3086 . - 0 ID=Phyra87400;Parent=Phyra87400;rank=2 scaffold_1929 . exon 3069 3086 . - . ID=Phyra87400.2;Parent=Phyra87400;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1929 . CDS 3141 3804 . - 0 ID=Phyra87400;Parent=Phyra87400;rank=1 scaffold_1929 . exon 3141 3804 . - . ID=Phyra87400.1;Parent=Phyra87400;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1765 1 3855 ##gff-version 3 ##sequence-region scaffold_1771 1 3855 scaffold_1771 . repeat_region 1292 2073 . ? . description=dust scaffold_1771 . biological_region 3557 3561 0.999 - . logic_name=eponine scaffold_1771 . biological_region 3788 3790 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1774 1 3855 scaffold_1774 . repeat_region 34 1372 . - . description=GypsyPi-1c_I-int scaffold_1774 . biological_region 406 409 0.999 + . logic_name=eponine scaffold_1774 . biological_region 1815 1821 0.999 + . logic_name=eponine scaffold_1774 . repeat_region 2035 2614 . ? . description=dust scaffold_1774 ensembl protein_coding_gene 5 3597 . - . ID=Phyra87283;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1774000001;logic_name=jgi_phyra1 scaffold_1774 ensembl transcript 5 3597 . - . ID=Phyra87283;Parent=Phyra87283;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1774 . CDS 5 40 . - 0 ID=Phyra87283;Parent=Phyra87283;rank=4 scaffold_1774 . exon 5 40 . - . ID=Phyra87283.4;Parent=Phyra87283;constitutive=1;rank=4 scaffold_1774 . CDS 330 1685 . - 0 ID=Phyra87283;Parent=Phyra87283;rank=3 scaffold_1774 . exon 330 1685 . - . ID=Phyra87283.3;Parent=Phyra87283;constitutive=1;rank=3 scaffold_1774 . CDS 1744 1956 . - 0 ID=Phyra87283;Parent=Phyra87283;rank=2 scaffold_1774 . exon 1744 1956 . - . ID=Phyra87283.2;Parent=Phyra87283;constitutive=1;rank=2 scaffold_1774 . CDS 2785 3597 . - 0 ID=Phyra87283;Parent=Phyra87283;rank=1 scaffold_1774 . exon 2785 3597 . - . ID=Phyra87283.1;Parent=Phyra87283;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1770 1 3857 scaffold_1770 . repeat_region 1431 2315 . ? . description=dust scaffold_1770 . repeat_region 2707 2714 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2009 1 3857 scaffold_2009 . repeat_region 1290 2901 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1764 1 3860 scaffold_1764 . biological_region 1388 1388 0.999 - . logic_name=eponine scaffold_1764 . repeat_region 2006 2539 . ? . description=dust scaffold_1764 . biological_region 2735 2744 0.999 - . logic_name=eponine scaffold_1764 . repeat_region 3720 3860 . ? . description=trf scaffold_1764 ensembl protein_coding_gene 5 526 . + . ID=Phyra87278;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1764000001;logic_name=jgi_phyra1 scaffold_1764 ensembl transcript 5 526 . + . ID=Phyra87278;Parent=Phyra87278;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1764 . CDS 5 526 . + 0 ID=Phyra87278;Parent=Phyra87278;rank=1 scaffold_1764 . exon 5 526 . + . ID=Phyra87278.1;Parent=Phyra87278;constitutive=1;rank=1 scaffold_1764 ensembl protein_coding_gene 2822 3736 . + . ID=Phyra87279;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1764000002;logic_name=jgi_phyra1 scaffold_1764 ensembl transcript 2822 3736 . + . ID=Phyra87279;Parent=Phyra87279;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1764 . CDS 2822 3736 . + 0 ID=Phyra87279;Parent=Phyra87279;rank=1 scaffold_1764 . exon 2822 3736 . + . ID=Phyra87279.1;Parent=Phyra87279;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1762 1 3861 scaffold_1762 . repeat_region 1598 1642 . ? . description=trf scaffold_1762 ensembl protein_coding_gene 179 3518 . + . ID=Phyra87276;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1762000001;logic_name=jgi_phyra1 scaffold_1762 ensembl transcript 179 3518 . + . ID=Phyra87276;Parent=Phyra87276;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1762 . CDS 179 3112 . + 0 ID=Phyra87276;Parent=Phyra87276;rank=1 scaffold_1762 . exon 179 3112 . + . ID=Phyra87276.1;Parent=Phyra87276;constitutive=1;rank=1 scaffold_1762 . CDS 3507 3518 . + 0 ID=Phyra87276;Parent=Phyra87276;rank=2 scaffold_1762 . exon 3507 3518 . + . ID=Phyra87276.2;Parent=Phyra87276;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1759 1 3862 scaffold_1759 . repeat_region 1205 1900 . ? . description=dust scaffold_1759 . biological_region 3381 3382 0.999 - . logic_name=eponine scaffold_1759 . biological_region 3473 3474 0.999 + . logic_name=eponine scaffold_1759 . biological_region 3564 3567 0.999 - . logic_name=eponine scaffold_1759 ensembl protein_coding_gene 2904 3855 . + . ID=Phyra87275;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1759000001;logic_name=jgi_phyra1 scaffold_1759 ensembl transcript 2904 3855 . + . ID=Phyra87275;Parent=Phyra87275;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1759 . CDS 2904 3855 . + 0 ID=Phyra87275;Parent=Phyra87275;rank=1 scaffold_1759 . exon 2904 3855 . + . ID=Phyra87275.1;Parent=Phyra87275;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1760 1 3862 scaffold_1760 . repeat_region 1636 1693 . ? . description=trf scaffold_1760 . repeat_region 1759 2957 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1761 1 3862 scaffold_1761 . repeat_region 796 834 . ? . description=trf scaffold_1761 . repeat_region 1661 2498 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1763 1 3862 scaffold_1763 . biological_region 1095 1096 0.999 - . logic_name=eponine scaffold_1763 ensembl protein_coding_gene 565 3849 . - . ID=Phyra87277;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1763000001;logic_name=jgi_phyra1 scaffold_1763 ensembl transcript 565 3849 . - . ID=Phyra87277;Parent=Phyra87277;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1763 . CDS 565 3849 . - 0 ID=Phyra87277;Parent=Phyra87277;rank=1 scaffold_1763 . exon 565 3849 . - . ID=Phyra87277.1;Parent=Phyra87277;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1758 1 3865 scaffold_1758 . repeat_region 1450 2778 . ? . description=dust scaffold_1758 ensembl protein_coding_gene 324 779 . + . ID=Phyra87273;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1758000001;logic_name=jgi_phyra1 scaffold_1758 ensembl transcript 324 779 . + . ID=Phyra87273;Parent=Phyra87273;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1758 . CDS 324 779 . + 0 ID=Phyra87273;Parent=Phyra87273;rank=1 scaffold_1758 . exon 324 779 . + . ID=Phyra87273.1;Parent=Phyra87273;constitutive=1;rank=1 scaffold_1758 ensembl protein_coding_gene 3198 3560 . + . ID=Phyra87274;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1758000002;logic_name=jgi_phyra1 scaffold_1758 ensembl transcript 3198 3560 . + . ID=Phyra87274;Parent=Phyra87274;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1758 . CDS 3198 3560 . + 0 ID=Phyra87274;Parent=Phyra87274;rank=1 scaffold_1758 . exon 3198 3560 . + . ID=Phyra87274.1;Parent=Phyra87274;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1751 1 3866 scaffold_1751 . biological_region 1373 1379 0.999 - . logic_name=eponine scaffold_1751 . repeat_region 1442 2621 . ? . description=dust scaffold_1751 . biological_region 2900 2904 0.999 + . logic_name=eponine scaffold_1751 . biological_region 3221 3224 0.999 - . logic_name=eponine scaffold_1751 . biological_region 3380 3386 0.999 + . logic_name=eponine scaffold_1751 ensembl protein_coding_gene 2999 3712 . - . ID=Phyra87270;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1751000001;logic_name=jgi_phyra1 scaffold_1751 ensembl transcript 2999 3712 . - . ID=Phyra87270;Parent=Phyra87270;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1751 . CDS 2999 3712 . - 0 ID=Phyra87270;Parent=Phyra87270;rank=1 scaffold_1751 . exon 2999 3712 . - . ID=Phyra87270.1;Parent=Phyra87270;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1757 1 3869 scaffold_1757 . repeat_region 1793 2394 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1577 1 3870 scaffold_1577 . repeat_region 249 291 . ? . description=trf scaffold_1577 . repeat_region 1589 1610 . ? . description=trf scaffold_1577 . repeat_region 3479 3521 . ? . description=trf scaffold_1577 . repeat_region 3620 3666 . ? . description=trf scaffold_1577 ensembl protein_coding_gene 318 3428 . + . ID=Phyra87115;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1577000001;logic_name=jgi_phyra1 scaffold_1577 ensembl transcript 318 3428 . + . ID=Phyra87115;Parent=Phyra87115;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1577 . CDS 318 352 . + 0 ID=Phyra87115;Parent=Phyra87115;rank=1 scaffold_1577 . exon 318 352 . + . ID=Phyra87115.1;Parent=Phyra87115;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1577 . CDS 505 1861 . + 0 ID=Phyra87115;Parent=Phyra87115;rank=2 scaffold_1577 . exon 505 1861 . + . ID=Phyra87115.2;Parent=Phyra87115;constitutive=1;ensembl_phase=2;rank=2 scaffold_1577 . CDS 2016 3428 . + 0 ID=Phyra87115;Parent=Phyra87115;rank=3 scaffold_1577 . exon 2016 3428 . + . ID=Phyra87115.3;Parent=Phyra87115;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1755 1 3871 scaffold_1755 . biological_region 78 82 0.999 + . logic_name=eponine scaffold_1755 . repeat_region 1239 2155 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1754 1 3872 scaffold_1754 . biological_region 644 648 0.999 - . logic_name=eponine scaffold_1754 . repeat_region 1076 1670 . ? . description=dust scaffold_1754 . repeat_region 2798 2896 . + . description=GypsyPi-1c_I-int scaffold_1754 . biological_region 3203 3209 0.999 + . logic_name=eponine scaffold_1754 . biological_region 3303 3304 0.999 - . logic_name=eponine scaffold_1754 . biological_region 3340 3344 0.999 + . logic_name=eponine scaffold_1754 . biological_region 3395 3396 0.999 + . logic_name=eponine scaffold_1754 ensembl protein_coding_gene 3230 3818 . + . ID=Phyra87272;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1754000001;logic_name=jgi_phyra1 scaffold_1754 ensembl transcript 3230 3818 . + . ID=Phyra87272;Parent=Phyra87272;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1754 . CDS 3230 3818 . + 0 ID=Phyra87272;Parent=Phyra87272;rank=1 scaffold_1754 . exon 3230 3818 . + . ID=Phyra87272.1;Parent=Phyra87272;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1756 1 3872 scaffold_1756 . repeat_region 2332 3103 . ? . description=dust scaffold_1756 . repeat_region 3107 3117 . ? . description=dust scaffold_1756 . biological_region 3295 3296 0.999 + . logic_name=eponine scaffold_1756 . repeat_region 3370 3648 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1752 1 3876 scaffold_1752 . repeat_region 1342 2490 . ? . description=dust scaffold_1752 ensembl protein_coding_gene 14 3666 . - . ID=Phyra87271;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1752000001;logic_name=jgi_phyra1 scaffold_1752 ensembl transcript 14 3666 . - . ID=Phyra87271;Parent=Phyra87271;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1752 . CDS 14 1294 . - 0 ID=Phyra87271;Parent=Phyra87271;rank=2 scaffold_1752 . exon 14 1294 . - . ID=Phyra87271.2;Parent=Phyra87271;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1752 . CDS 2493 3666 . - 0 ID=Phyra87271;Parent=Phyra87271;rank=1 scaffold_1752 . exon 2493 3666 . - . ID=Phyra87271.1;Parent=Phyra87271;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1750 1 3879 scaffold_1750 . repeat_region 1350 2493 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1749 1 3881 scaffold_1749 . repeat_region 1297 2259 . ? . description=dust scaffold_1749 . repeat_region 2575 2841 . ? . description=trf scaffold_1749 . repeat_region 3556 3574 . ? . description=dust scaffold_1749 ensembl protein_coding_gene 101 928 . + . ID=Phyra87269;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1749000001;logic_name=jgi_phyra1 scaffold_1749 ensembl transcript 101 928 . + . ID=Phyra87269;Parent=Phyra87269;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1749 . CDS 101 928 . + 0 ID=Phyra87269;Parent=Phyra87269;rank=1 scaffold_1749 . exon 101 928 . + . ID=Phyra87269.1;Parent=Phyra87269;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1990 1 3881 scaffold_1990 . repeat_region 831 873 . ? . description=trf scaffold_1990 . repeat_region 971 1017 . ? . description=trf scaffold_1990 . repeat_region 1432 2774 . ? . description=dust scaffold_1990 . repeat_region 3683 3704 . ? . description=trf scaffold_1990 ensembl protein_coding_gene 1161 3873 . + . ID=Phyra87439;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1990000001;logic_name=jgi_phyra1 scaffold_1990 ensembl transcript 1161 3873 . + . ID=Phyra87439;Parent=Phyra87439;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1990 . CDS 1161 1397 . + 0 ID=Phyra87439;Parent=Phyra87439;rank=1 scaffold_1990 . exon 1161 1397 . + . ID=Phyra87439.1;Parent=Phyra87439;constitutive=1;rank=1 scaffold_1990 . CDS 2810 3873 . + 0 ID=Phyra87439;Parent=Phyra87439;rank=2 scaffold_1990 . exon 2810 3873 . + . ID=Phyra87439.2;Parent=Phyra87439;constitutive=1;ensembl_end_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1747 1 3882 scaffold_1747 . repeat_region 1639 2313 . ? . description=dust scaffold_1747 . biological_region 3069 3070 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1745 1 3884 scaffold_1745 . repeat_region 1565 2452 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1742 1 3886 scaffold_1742 . repeat_region 1100 1759 . ? . description=dust scaffold_1742 . biological_region 2753 2759 0.999 + . logic_name=eponine scaffold_1742 . biological_region 2814 2821 0.999 + . logic_name=eponine scaffold_1742 . biological_region 2815 2820 0.999 - . logic_name=eponine scaffold_1742 . biological_region 2870 2874 0.999 - . logic_name=eponine scaffold_1742 . biological_region 2873 2873 0.999 + . logic_name=eponine scaffold_1742 . biological_region 2886 2897 0.999 + . logic_name=eponine scaffold_1742 . biological_region 2892 2896 0.999 - . logic_name=eponine scaffold_1742 . biological_region 2928 2930 0.999 - . logic_name=eponine scaffold_1742 . biological_region 2946 2951 0.999 + . logic_name=eponine scaffold_1742 . biological_region 3028 3029 0.999 - . logic_name=eponine scaffold_1742 . biological_region 3608 3609 0.999 - . logic_name=eponine scaffold_1742 ensembl protein_coding_gene 2519 3784 . - . ID=Phyra72509;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1742000001;logic_name=jgi_phyra1 scaffold_1742 ensembl transcript 2519 3784 . - . ID=Phyra72509;Parent=Phyra72509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1742 . CDS 2519 3784 . - 0 ID=Phyra72509;Parent=Phyra72509;rank=1 scaffold_1742 . exon 2519 3784 . - . ID=Phyra72509.1;Parent=Phyra72509;constitutive=1;rank=1 scaffold_1742 ensembl protein_coding_gene 187 1960 . - . ID=Phyra87265;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1742000001;logic_name=jgi_phyra1 scaffold_1742 ensembl transcript 187 1960 . - . ID=Phyra87265;Parent=Phyra87265;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1742 . CDS 187 297 . - 0 ID=Phyra87265;Parent=Phyra87265;rank=4 scaffold_1742 . exon 187 297 . - . ID=Phyra87265.4;Parent=Phyra87265;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1742 . CDS 362 791 . - 0 ID=Phyra87265;Parent=Phyra87265;rank=3 scaffold_1742 . exon 362 791 . - . ID=Phyra87265.3;Parent=Phyra87265;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1742 . CDS 860 1072 . - 0 ID=Phyra87265;Parent=Phyra87265;rank=2 scaffold_1742 . exon 860 1072 . - . ID=Phyra87265.2;Parent=Phyra87265;constitutive=1;rank=2 scaffold_1742 . CDS 1949 1960 . - 0 ID=Phyra87265;Parent=Phyra87265;rank=1 scaffold_1742 . exon 1949 1960 . - . ID=Phyra87265.1;Parent=Phyra87265;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1767 1 3886 scaffold_1767 . repeat_region 4 514 . - . description=Polinton-1_PI scaffold_1767 . repeat_region 618 796 . - . description=Polinton-1_PI scaffold_1767 . repeat_region 1030 2251 . ? . description=dust scaffold_1767 . repeat_region 2269 2837 . - . description=Polinton-1_PI scaffold_1767 . repeat_region 2313 2321 . ? . description=dust scaffold_1767 . repeat_region 2544 2552 . ? . description=dust scaffold_1767 . repeat_region 3409 3884 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1743 1 3887 scaffold_1743 . repeat_region 44 310 . - . description=GypsyPi-1c_I-int scaffold_1743 . biological_region 918 920 0.999 + . logic_name=eponine scaffold_1743 . repeat_region 1155 1684 . ? . description=dust scaffold_1743 . repeat_region 2022 2138 . - . description=GypsyPi-1c_I-int scaffold_1743 . repeat_region 3853 3863 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1739 1 3891 scaffold_1739 . repeat_region 597 641 . ? . description=trf scaffold_1739 . repeat_region 1379 2599 . ? . description=dust scaffold_1739 ensembl protein_coding_gene 683 1288 . - . ID=Phyra72508;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1739000001;logic_name=jgi_phyra1 scaffold_1739 ensembl transcript 683 1288 . - . ID=Phyra72508;Parent=Phyra72508;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1739 . CDS 683 1288 . - 0 ID=Phyra72508;Parent=Phyra72508;rank=1 scaffold_1739 . exon 683 1288 . - . ID=Phyra72508.1;Parent=Phyra72508;constitutive=1;rank=1 scaffold_1739 ensembl protein_coding_gene 2682 3878 . + . ID=Phyra87261;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1739000002;logic_name=jgi_phyra1 scaffold_1739 ensembl transcript 2682 3878 . + . ID=Phyra87261;Parent=Phyra87261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1739 . CDS 2682 3878 . + 0 ID=Phyra87261;Parent=Phyra87261;rank=1 scaffold_1739 . exon 2682 3878 . + . ID=Phyra87261.1;Parent=Phyra87261;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1557 1 3892 scaffold_1557 . repeat_region 3325 3888 . + . description=Gypsy-1-I_PI-int scaffold_1557 ensembl protein_coding_gene 1494 2336 . + . ID=Phyra87097;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1557000001;logic_name=jgi_phyra1 scaffold_1557 ensembl transcript 1494 2336 . + . ID=Phyra87097;Parent=Phyra87097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1557 . CDS 1494 2336 . + 0 ID=Phyra87097;Parent=Phyra87097;rank=1 scaffold_1557 . exon 1494 2336 . + . ID=Phyra87097.1;Parent=Phyra87097;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1738 1 3892 scaffold_1738 . biological_region 51 52 0.999 + . logic_name=eponine scaffold_1738 . biological_region 107 110 0.999 - . logic_name=eponine scaffold_1738 . biological_region 1258 1261 0.999 - . logic_name=eponine scaffold_1738 . repeat_region 2062 2947 . ? . description=dust scaffold_1738 ensembl protein_coding_gene 4 2024 . - . ID=Phyra87259;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1738000001;logic_name=jgi_phyra1 scaffold_1738 ensembl transcript 4 2024 . - . ID=Phyra87259;Parent=Phyra87259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1738 . CDS 4 595 . - 0 ID=Phyra87259;Parent=Phyra87259;rank=4 scaffold_1738 . exon 4 595 . - . ID=Phyra87259.4;Parent=Phyra87259;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1738 . CDS 685 1254 . - 0 ID=Phyra87259;Parent=Phyra87259;rank=3 scaffold_1738 . exon 685 1254 . - . ID=Phyra87259.3;Parent=Phyra87259;constitutive=1;rank=3 scaffold_1738 . CDS 1394 1397 . - 0 ID=Phyra87259;Parent=Phyra87259;rank=2 scaffold_1738 . exon 1394 1397 . - . ID=Phyra87259.2;Parent=Phyra87259;constitutive=1;ensembl_phase=2;rank=2 scaffold_1738 . CDS 1480 2024 . - 0 ID=Phyra87259;Parent=Phyra87259;rank=1 scaffold_1738 . exon 1480 2024 . - . ID=Phyra87259.1;Parent=Phyra87259;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1733 1 3895 scaffold_1733 . repeat_region 1816 2247 . ? . description=dust scaffold_1733 ensembl protein_coding_gene 176 1664 . + . ID=Phyra87254;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1733000001;logic_name=jgi_phyra1 scaffold_1733 ensembl transcript 176 1664 . + . ID=Phyra87254;Parent=Phyra87254;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1733 . CDS 176 551 . + 0 ID=Phyra87254;Parent=Phyra87254;rank=1 scaffold_1733 . exon 176 551 . + . ID=Phyra87254.1;Parent=Phyra87254;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1733 . CDS 739 1664 . + 0 ID=Phyra87254;Parent=Phyra87254;rank=2 scaffold_1733 . exon 739 1664 . + . ID=Phyra87254.2;Parent=Phyra87254;constitutive=1;ensembl_phase=1;rank=2 scaffold_1733 ensembl protein_coding_gene 2636 3523 . - . ID=Phyra87255;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1733000002;logic_name=jgi_phyra1 scaffold_1733 ensembl transcript 2636 3523 . - . ID=Phyra87255;Parent=Phyra87255;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1733 . CDS 2636 3523 . - 0 ID=Phyra87255;Parent=Phyra87255;rank=1 scaffold_1733 . exon 2636 3523 . - . ID=Phyra87255.1;Parent=Phyra87255;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1737 1 3896 scaffold_1737 . repeat_region 1626 2212 . ? . description=dust scaffold_1737 . repeat_region 2915 3301 . + . description=GypsyPi-1c_I-int scaffold_1737 . biological_region 2929 2934 0.999 + . logic_name=eponine scaffold_1737 . repeat_region 3554 3894 . + . description=GypsyPi-1c_I-int scaffold_1737 ensembl pseudogene 2947 3283 . + . ID=Phyra42970;biotype=pseudogene;external_name=gwEuk.1737.1.1;logic_name=jgi_phyra1 scaffold_1737 ensembl pseudogene 2947 3283 . + . ID=Phyra42970;Parent=Phyra42970;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1737 . exon 2947 3283 . + . ID=Phyra42970.1;Parent=Phyra42970;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1737 ensembl protein_coding_gene 11 1066 . - . ID=Phyra87258;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1737000001;logic_name=jgi_phyra1 scaffold_1737 ensembl transcript 11 1066 . - . ID=Phyra87258;Parent=Phyra87258;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1737 . CDS 11 1066 . - 0 ID=Phyra87258;Parent=Phyra87258;rank=1 scaffold_1737 . exon 11 1066 . - . ID=Phyra87258.1;Parent=Phyra87258;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1858 1 3898 scaffold_1858 . repeat_region 1160 1850 . ? . description=dust scaffold_1858 . repeat_region 3246 3337 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1735 1 3900 scaffold_1735 . repeat_region 845 861 . ? . description=dust scaffold_1735 . repeat_region 863 874 . ? . description=dust scaffold_1735 . repeat_region 1938 2364 . ? . description=dust scaffold_1735 . repeat_region 2726 2735 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1734 1 3901 scaffold_1734 . biological_region 664 666 0.999 + . logic_name=eponine scaffold_1734 . repeat_region 1192 1894 . ? . description=dust scaffold_1734 . biological_region 1969 1976 0.999 + . logic_name=eponine scaffold_1734 . biological_region 2070 2071 0.999 - . logic_name=eponine scaffold_1734 . biological_region 2107 2111 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1740 1 3904 scaffold_1740 . biological_region 101 104 0.999 + . logic_name=eponine scaffold_1740 . repeat_region 1287 2096 . ? . description=dust scaffold_1740 . biological_region 2316 2319 0.999 + . logic_name=eponine scaffold_1740 ensembl protein_coding_gene 11 364 . - . ID=Phyra87262;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1740000001;logic_name=jgi_phyra1 scaffold_1740 ensembl transcript 11 364 . - . ID=Phyra87262;Parent=Phyra87262;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1740 . CDS 11 364 . - 0 ID=Phyra87262;Parent=Phyra87262;rank=1 scaffold_1740 . exon 11 364 . - . ID=Phyra87262.1;Parent=Phyra87262;constitutive=1;rank=1 scaffold_1740 ensembl protein_coding_gene 806 2588 . - . ID=Phyra87263;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1740000002;logic_name=jgi_phyra1 scaffold_1740 ensembl transcript 806 2588 . - . ID=Phyra87263;Parent=Phyra87263;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1740 . CDS 806 1277 . - 0 ID=Phyra87263;Parent=Phyra87263;rank=2 scaffold_1740 . exon 806 1277 . - . ID=Phyra87263.2;Parent=Phyra87263;constitutive=1;ensembl_phase=2;rank=2 scaffold_1740 . CDS 2158 2588 . - 0 ID=Phyra87263;Parent=Phyra87263;rank=1 scaffold_1740 . exon 2158 2588 . - . ID=Phyra87263.1;Parent=Phyra87263;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1740 ensembl protein_coding_gene 3384 3890 . - . ID=Phyra87264;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1740000003;logic_name=jgi_phyra1 scaffold_1740 ensembl transcript 3384 3890 . - . ID=Phyra87264;Parent=Phyra87264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1740 . CDS 3384 3890 . - 0 ID=Phyra87264;Parent=Phyra87264;rank=1 scaffold_1740 . exon 3384 3890 . - . ID=Phyra87264.1;Parent=Phyra87264;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1789 1 3906 scaffold_1789 . repeat_region 1040 2362 . ? . description=dust scaffold_1789 . repeat_region 2844 2886 . ? . description=trf scaffold_1789 . repeat_region 2985 3031 . ? . description=trf scaffold_1789 . repeat_region 3852 3892 . ? . description=trf scaffold_1789 ensembl protein_coding_gene 2365 2718 . + . ID=Phyra43016;biotype=protein_coding;external_name=gwEuk.1789.4.1;logic_name=jgi_phyra1 scaffold_1789 ensembl transcript 2365 2718 . + . ID=Phyra43016;Parent=Phyra43016;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1789 . CDS 2365 2718 . + 0 ID=Phyra43016;Parent=Phyra43016;rank=1 scaffold_1789 . exon 2365 2718 . + . ID=Phyra43016.1;Parent=Phyra43016;constitutive=1;rank=1 scaffold_1789 ensembl protein_coding_gene 3161 3607 . - . ID=Phyra43020;biotype=protein_coding;external_name=gwEuk.1789.8.1;logic_name=jgi_phyra1 scaffold_1789 ensembl transcript 3161 3607 . - . ID=Phyra43020;Parent=Phyra43020;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1789 . CDS 3161 3607 . - 0 ID=Phyra43020;Parent=Phyra43020;rank=1 scaffold_1789 . exon 3161 3607 . - . ID=Phyra43020.1;Parent=Phyra43020;constitutive=1;rank=1 scaffold_1789 ensembl protein_coding_gene 67 1035 . + . ID=Phyra87291;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1789000001;logic_name=jgi_phyra1 scaffold_1789 ensembl transcript 67 1035 . + . ID=Phyra87291;Parent=Phyra87291;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1789 . CDS 67 1035 . + 0 ID=Phyra87291;Parent=Phyra87291;rank=1 scaffold_1789 . exon 67 1035 . + . ID=Phyra87291.1;Parent=Phyra87291;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1731 1 3907 scaffold_1731 . repeat_region 1051 2128 . ? . description=dust scaffold_1731 . biological_region 3691 3693 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1730 1 3908 scaffold_1730 . repeat_region 774 819 . ? . description=trf scaffold_1730 . repeat_region 1066 2015 . ? . description=dust scaffold_1730 . biological_region 2199 2204 0.999 - . logic_name=eponine scaffold_1730 ensembl protein_coding_gene 77 535 . + . ID=Phyra87251;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1730000001;logic_name=jgi_phyra1 scaffold_1730 ensembl transcript 77 535 . + . ID=Phyra87251;Parent=Phyra87251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1730 . CDS 77 535 . + 0 ID=Phyra87251;Parent=Phyra87251;rank=1 scaffold_1730 . exon 77 535 . + . ID=Phyra87251.1;Parent=Phyra87251;constitutive=1;rank=1 scaffold_1730 ensembl protein_coding_gene 2205 3266 . + . ID=Phyra87252;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1730000002;logic_name=jgi_phyra1 scaffold_1730 ensembl transcript 2205 3266 . + . ID=Phyra87252;Parent=Phyra87252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1730 . CDS 2205 3266 . + 0 ID=Phyra87252;Parent=Phyra87252;rank=1 scaffold_1730 . exon 2205 3266 . + . ID=Phyra87252.1;Parent=Phyra87252;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1729 1 3909 scaffold_1729 . repeat_region 116 140 . ? . description=trf scaffold_1729 ensembl protein_coding_gene 597 863 . - . ID=Phyra42963;biotype=protein_coding;external_name=gwEuk.1729.1.1;logic_name=jgi_phyra1 scaffold_1729 ensembl transcript 597 863 . - . ID=Phyra42963;Parent=Phyra42963;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1729 . CDS 597 863 . - 0 ID=Phyra42963;Parent=Phyra42963;rank=1 scaffold_1729 . exon 597 863 . - . ID=Phyra42963.1;Parent=Phyra42963;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1797 1 3909 scaffold_1797 . biological_region 96 99 0.999 + . logic_name=eponine scaffold_1797 . biological_region 130 132 0.999 - . logic_name=eponine scaffold_1797 . repeat_region 1128 2498 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1728 1 3913 scaffold_1728 . repeat_region 1649 2278 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1727 1 3914 scaffold_1727 . repeat_region 1423 2562 . ? . description=dust scaffold_1727 . repeat_region 2652 2695 . ? . description=trf scaffold_1727 . repeat_region 2804 2848 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1725 1 3915 scaffold_1725 . repeat_region 1540 2116 . ? . description=dust scaffold_1725 ensembl protein_coding_gene 2371 3851 . - . ID=Phyra87249;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1725000001;logic_name=jgi_phyra1 scaffold_1725 ensembl transcript 2371 3851 . - . ID=Phyra87249;Parent=Phyra87249;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1725 . CDS 2371 2871 . - 0 ID=Phyra87249;Parent=Phyra87249;rank=2 scaffold_1725 . exon 2371 2871 . - . ID=Phyra87249.2;Parent=Phyra87249;constitutive=1;rank=2 scaffold_1725 . CDS 2943 3851 . - 0 ID=Phyra87249;Parent=Phyra87249;rank=1 scaffold_1725 . exon 2943 3851 . - . ID=Phyra87249.1;Parent=Phyra87249;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1726 1 3915 scaffold_1726 . repeat_region 1845 2673 . ? . description=dust scaffold_1726 ensembl protein_coding_gene 400 1164 . - . ID=Phyra87250;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1726000001;logic_name=jgi_phyra1 scaffold_1726 ensembl transcript 400 1164 . - . ID=Phyra87250;Parent=Phyra87250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1726 . CDS 400 1164 . - 0 ID=Phyra87250;Parent=Phyra87250;rank=1 scaffold_1726 . exon 400 1164 . - . ID=Phyra87250.1;Parent=Phyra87250;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1723 1 3917 scaffold_1723 . repeat_region 2421 2653 . ? . description=dust scaffold_1723 . repeat_region 2661 2671 . ? . description=dust scaffold_1723 ensembl protein_coding_gene 51 1163 . - . ID=Phyra87248;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1723000001;logic_name=jgi_phyra1 scaffold_1723 ensembl transcript 51 1163 . - . ID=Phyra87248;Parent=Phyra87248;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1723 . CDS 51 1163 . - 0 ID=Phyra87248;Parent=Phyra87248;rank=1 scaffold_1723 . exon 51 1163 . - . ID=Phyra87248.1;Parent=Phyra87248;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1721 1 3918 scaffold_1721 . repeat_region 696 859 . ? . description=trf scaffold_1721 . repeat_region 2135 2289 . ? . description=dust scaffold_1721 . repeat_region 3361 3386 . ? . description=trf scaffold_1721 . repeat_region 3604 3710 . ? . description=trf scaffold_1721 . repeat_region 3616 3700 . ? . description=trf scaffold_1721 . repeat_region 3628 3688 . ? . description=trf scaffold_1721 . repeat_region 3633 3695 . ? . description=dust scaffold_1721 . repeat_region 3640 3676 . ? . description=trf scaffold_1721 . biological_region 3709 3710 0.999 - . logic_name=eponine scaffold_1721 ensembl protein_coding_gene 3307 3850 . - . ID=Phyra87247;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1721000001;logic_name=jgi_phyra1 scaffold_1721 ensembl transcript 3307 3850 . - . ID=Phyra87247;Parent=Phyra87247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1721 . CDS 3307 3516 . - 0 ID=Phyra87247;Parent=Phyra87247;rank=2 scaffold_1721 . exon 3307 3516 . - . ID=Phyra87247.2;Parent=Phyra87247;constitutive=1;rank=2 scaffold_1721 . CDS 3539 3850 . - 0 ID=Phyra87247;Parent=Phyra87247;rank=1 scaffold_1721 . exon 3539 3850 . - . ID=Phyra87247.1;Parent=Phyra87247;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1720 1 3920 scaffold_1720 . repeat_region 779 795 . ? . description=dust scaffold_1720 . repeat_region 3088 3145 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1724 1 3920 scaffold_1724 . repeat_region 558 572 . ? . description=dust scaffold_1724 . biological_region 843 848 0.999 - . logic_name=eponine scaffold_1724 . repeat_region 2206 2274 . ? . description=dust scaffold_1724 . repeat_region 2206 2298 . + . description=(TATAA)n scaffold_1724 . repeat_region 2614 2781 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1716 1 3921 scaffold_1716 . biological_region 148 150 0.999 - . logic_name=eponine scaffold_1716 . repeat_region 1129 2306 . ? . description=dust scaffold_1716 . biological_region 3322 3326 0.999 + . logic_name=eponine scaffold_1716 . biological_region 3373 3378 0.999 + . logic_name=eponine scaffold_1716 . biological_region 3402 3402 0.999 - . logic_name=eponine scaffold_1716 . biological_region 3439 3441 0.999 - . logic_name=eponine scaffold_1716 . biological_region 3476 3480 0.999 + . logic_name=eponine scaffold_1716 ensembl protein_coding_gene 42 245 . - . ID=Phyra42946;biotype=protein_coding;external_name=gwEuk.1716.1.1;logic_name=jgi_phyra1 scaffold_1716 ensembl transcript 42 245 . - . ID=Phyra42946;Parent=Phyra42946;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1716 . CDS 42 245 . - 0 ID=Phyra42946;Parent=Phyra42946;rank=1 scaffold_1716 . exon 42 245 . - . ID=Phyra42946.1;Parent=Phyra42946;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1715 1 3925 scaffold_1715 . repeat_region 1495 2640 . ? . description=dust scaffold_1715 . biological_region 3000 3009 0.999 - . logic_name=eponine scaffold_1715 . biological_region 3004 3006 0.999 + . logic_name=eponine scaffold_1715 . biological_region 3028 3029 0.999 - . logic_name=eponine scaffold_1715 . repeat_region 3374 3425 . ? . description=trf scaffold_1715 ensembl protein_coding_gene 588 3115 . - . ID=Phyra87244;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1715000001;logic_name=jgi_phyra1 scaffold_1715 ensembl transcript 588 3115 . - . ID=Phyra87244;Parent=Phyra87244;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1715 . CDS 588 659 . - 0 ID=Phyra87244;Parent=Phyra87244;rank=5 scaffold_1715 . exon 588 659 . - . ID=Phyra87244.5;Parent=Phyra87244;constitutive=1;rank=5 scaffold_1715 . CDS 679 743 . - 0 ID=Phyra87244;Parent=Phyra87244;rank=4 scaffold_1715 . exon 679 743 . - . ID=Phyra87244.4;Parent=Phyra87244;constitutive=1;ensembl_phase=1;rank=4 scaffold_1715 . CDS 816 921 . - 0 ID=Phyra87244;Parent=Phyra87244;rank=3 scaffold_1715 . exon 816 921 . - . ID=Phyra87244.3;Parent=Phyra87244;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1715 . CDS 1006 1454 . - 0 ID=Phyra87244;Parent=Phyra87244;rank=2 scaffold_1715 . exon 1006 1454 . - . ID=Phyra87244.2;Parent=Phyra87244;constitutive=1;ensembl_phase=1;rank=2 scaffold_1715 . CDS 2704 3115 . - 0 ID=Phyra87244;Parent=Phyra87244;rank=1 scaffold_1715 . exon 2704 3115 . - . ID=Phyra87244.1;Parent=Phyra87244;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1718 1 3925 scaffold_1718 . repeat_region 2453 2709 . ? . description=dust scaffold_1718 . repeat_region 3646 3667 . ? . description=dust scaffold_1718 . repeat_region 3773 3803 . ? . description=dust scaffold_1718 ensembl protein_coding_gene 732 2381 . - . ID=Phyra42948;biotype=protein_coding;external_name=gwEuk.1718.2.1;logic_name=jgi_phyra1 scaffold_1718 ensembl transcript 732 2381 . - . ID=Phyra42948;Parent=Phyra42948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1718 . CDS 732 1441 . - 0 ID=Phyra42948;Parent=Phyra42948;rank=3 scaffold_1718 . exon 732 1441 . - . ID=Phyra42948.3;Parent=Phyra42948;constitutive=1;ensembl_phase=1;rank=3 scaffold_1718 . CDS 1499 1850 . - 0 ID=Phyra42948;Parent=Phyra42948;rank=2 scaffold_1718 . exon 1499 1850 . - . ID=Phyra42948.2;Parent=Phyra42948;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1718 . CDS 1971 2381 . - 0 ID=Phyra42948;Parent=Phyra42948;rank=1 scaffold_1718 . exon 1971 2381 . - . ID=Phyra42948.1;Parent=Phyra42948;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1712 1 3931 scaffold_1712 . repeat_region 178 313 . ? . description=trf scaffold_1712 . repeat_region 1290 1344 . ? . description=dust scaffold_1712 . repeat_region 1290 1346 . ? . description=trf scaffold_1712 . repeat_region 1349 2814 . ? . description=dust scaffold_1712 . repeat_region 3850 3895 . ? . description=dust scaffold_1712 . repeat_region 3869 3900 . ? . description=trf scaffold_1712 ensembl protein_coding_gene 3131 3901 . - . ID=Phyra87242;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1712000001;logic_name=jgi_phyra1 scaffold_1712 ensembl transcript 3131 3901 . - . ID=Phyra87242;Parent=Phyra87242;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1712 . CDS 3131 3495 . - 0 ID=Phyra87242;Parent=Phyra87242;rank=2 scaffold_1712 . exon 3131 3495 . - . ID=Phyra87242.2;Parent=Phyra87242;constitutive=1;ensembl_phase=1;rank=2 scaffold_1712 . CDS 3877 3901 . - 0 ID=Phyra87242;Parent=Phyra87242;rank=1 scaffold_1712 . exon 3877 3901 . - . ID=Phyra87242.1;Parent=Phyra87242;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1748 1 3932 scaffold_1748 . repeat_region 838 887 . ? . description=dust scaffold_1748 . repeat_region 1880 2825 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1732 1 3936 scaffold_1732 . biological_region 546 546 0.999 - . logic_name=eponine scaffold_1732 ensembl protein_coding_gene 1071 3074 . + . ID=Phyra87253;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1732000001;logic_name=jgi_phyra1 scaffold_1732 ensembl transcript 1071 3074 . + . ID=Phyra87253;Parent=Phyra87253;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1732 . CDS 1071 3074 . + 0 ID=Phyra87253;Parent=Phyra87253;rank=1 scaffold_1732 . exon 1071 3074 . + . ID=Phyra87253.1;Parent=Phyra87253;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1711 1 3937 scaffold_1711 . repeat_region 1818 2501 . ? . description=dust scaffold_1711 . repeat_region 3132 3186 . ? . description=trf scaffold_1711 . repeat_region 3363 3399 . ? . description=trf scaffold_1711 ensembl protein_coding_gene 3532 3864 . - . ID=Phyra87241;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1711000001;logic_name=jgi_phyra1 scaffold_1711 ensembl transcript 3532 3864 . - . ID=Phyra87241;Parent=Phyra87241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1711 . CDS 3532 3864 . - 0 ID=Phyra87241;Parent=Phyra87241;rank=1 scaffold_1711 . exon 3532 3864 . - . ID=Phyra87241.1;Parent=Phyra87241;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1709 1 3939 scaffold_1709 . biological_region 700 704 0.999 - . logic_name=eponine scaffold_1709 . repeat_region 1336 2503 . ? . description=dust scaffold_1709 . repeat_region 3870 3900 . ? . description=trf scaffold_1709 ensembl protein_coding_gene 7 1184 . - . ID=Phyra87238;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1709000001;logic_name=jgi_phyra1 scaffold_1709 ensembl transcript 7 1184 . - . ID=Phyra87238;Parent=Phyra87238;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1709 . CDS 7 1184 . - 0 ID=Phyra87238;Parent=Phyra87238;rank=1 scaffold_1709 . exon 7 1184 . - . ID=Phyra87238.1;Parent=Phyra87238;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1709 ensembl protein_coding_gene 2670 3939 . + . ID=Phyra87239;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1709000002;logic_name=jgi_phyra1 scaffold_1709 ensembl transcript 2670 3939 . + . ID=Phyra87239;Parent=Phyra87239;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1709 . CDS 2670 3939 . + 0 ID=Phyra87239;Parent=Phyra87239;rank=1 scaffold_1709 . exon 2670 3939 . + . ID=Phyra87239.1;Parent=Phyra87239;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1707 1 3941 scaffold_1707 . biological_region 1448 1451 0.999 - . logic_name=eponine scaffold_1707 . repeat_region 1499 1522 . ? . description=dust scaffold_1707 . repeat_region 1523 1542 . ? . description=trf scaffold_1707 . repeat_region 1543 1852 . ? . description=dust scaffold_1707 . biological_region 2176 2180 0.999 - . logic_name=eponine scaffold_1707 . repeat_region 2556 2585 . ? . description=trf scaffold_1707 . repeat_region 2950 3047 . ? . description=trf scaffold_1707 . repeat_region 3458 3465 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1706 1 3943 scaffold_1706 . repeat_region 1523 2704 . ? . description=dust scaffold_1706 ensembl protein_coding_gene 86 791 . - . ID=Phyra87236;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1706000001;logic_name=jgi_phyra1 scaffold_1706 ensembl transcript 86 791 . - . ID=Phyra87236;Parent=Phyra87236;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1706 . CDS 86 470 . - 0 ID=Phyra87236;Parent=Phyra87236;rank=3 scaffold_1706 . exon 86 470 . - . ID=Phyra87236.3;Parent=Phyra87236;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1706 . CDS 502 567 . - 0 ID=Phyra87236;Parent=Phyra87236;rank=2 scaffold_1706 . exon 502 567 . - . ID=Phyra87236.2;Parent=Phyra87236;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1706 . CDS 695 791 . - 0 ID=Phyra87236;Parent=Phyra87236;rank=1 scaffold_1706 . exon 695 791 . - . ID=Phyra87236.1;Parent=Phyra87236;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1706 ensembl protein_coding_gene 2776 3816 . + . ID=Phyra87237;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1706000002;logic_name=jgi_phyra1 scaffold_1706 ensembl transcript 2776 3816 . + . ID=Phyra87237;Parent=Phyra87237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1706 . CDS 2776 3816 . + 0 ID=Phyra87237;Parent=Phyra87237;rank=1 scaffold_1706 . exon 2776 3816 . + . ID=Phyra87237.1;Parent=Phyra87237;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1705 1 3946 scaffold_1705 . biological_region 43 46 0.999 + . logic_name=eponine scaffold_1705 . biological_region 159 161 0.999 + . logic_name=eponine scaffold_1705 . repeat_region 1579 2762 . ? . description=dust scaffold_1705 ensembl protein_coding_gene 356 937 . + . ID=Phyra87235;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1705000001;logic_name=jgi_phyra1 scaffold_1705 ensembl transcript 356 937 . + . ID=Phyra87235;Parent=Phyra87235;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1705 . CDS 356 937 . + 0 ID=Phyra87235;Parent=Phyra87235;rank=1 scaffold_1705 . exon 356 937 . + . ID=Phyra87235.1;Parent=Phyra87235;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1701 1 3951 scaffold_1701 . biological_region 120 125 0.999 + . logic_name=eponine scaffold_1701 ensembl protein_coding_gene 1119 2689 . + . ID=Phyra87231;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1701000001;logic_name=jgi_phyra1 scaffold_1701 ensembl transcript 1119 2689 . + . ID=Phyra87231;Parent=Phyra87231;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1701 . CDS 1119 1987 . + 0 ID=Phyra87231;Parent=Phyra87231;rank=1 scaffold_1701 . exon 1119 1987 . + . ID=Phyra87231.1;Parent=Phyra87231;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1701 . CDS 2020 2484 . + 0 ID=Phyra87231;Parent=Phyra87231;rank=2 scaffold_1701 . exon 2020 2484 . + . ID=Phyra87231.2;Parent=Phyra87231;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1701 . CDS 2542 2689 . + 0 ID=Phyra87231;Parent=Phyra87231;rank=3 scaffold_1701 . exon 2542 2689 . + . ID=Phyra87231.3;Parent=Phyra87231;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_1719 1 3951 scaffold_1719 . repeat_region 1522 2991 . ? . description=dust scaffold_1719 ensembl protein_coding_gene 816 1226 . + . ID=Phyra42954;biotype=protein_coding;external_name=gwEuk.1719.6.1;logic_name=jgi_phyra1 scaffold_1719 ensembl transcript 816 1226 . + . ID=Phyra42954;Parent=Phyra42954;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1719 . CDS 816 1226 . + 0 ID=Phyra42954;Parent=Phyra42954;rank=1 scaffold_1719 . exon 816 1226 . + . ID=Phyra42954.1;Parent=Phyra42954;constitutive=1;rank=1 scaffold_1719 ensembl protein_coding_gene 3203 3838 . + . ID=Phyra87246;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1719000002;logic_name=jgi_phyra1 scaffold_1719 ensembl transcript 3203 3838 . + . ID=Phyra87246;Parent=Phyra87246;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1719 . CDS 3203 3838 . + 0 ID=Phyra87246;Parent=Phyra87246;rank=1 scaffold_1719 . exon 3203 3838 . + . ID=Phyra87246.1;Parent=Phyra87246;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1700 1 3952 scaffold_1700 . repeat_region 1750 2453 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1702 1 3952 scaffold_1702 . repeat_region 974 2781 . ? . description=dust scaffold_1702 . repeat_region 3117 3128 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1698 1 3953 scaffold_1698 . repeat_region 183 208 . ? . description=trf scaffold_1698 . repeat_region 206 230 . ? . description=trf scaffold_1698 . biological_region 406 408 0.999 + . logic_name=eponine scaffold_1698 . repeat_region 804 2593 . ? . description=dust scaffold_1698 . biological_region 3797 3801 0.999 + . logic_name=eponine scaffold_1698 . biological_region 3806 3808 0.999 - . logic_name=eponine scaffold_1698 . biological_region 3913 3914 0.999 - . logic_name=eponine scaffold_1698 ensembl snRNA_gene 2693 2882 . - . ID=EPrPRAG00000000089;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_1698 ensembl snRNA 2693 2882 . - . ID=EPrPRAT00000000089;Parent=EPrPRAG00000000089;biotype=snRNA;logic_name=ncrna_eg scaffold_1698 ensembl snRNA_gene 3199 3343 . - . ID=EPrPRAG00000000197;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_1698 ensembl snRNA 3199 3343 . - . ID=EPrPRAT00000000197;Parent=EPrPRAG00000000197;biotype=snRNA;logic_name=ncrna_eg scaffold_1698 . exon 2693 2882 . - . ID=EPrPRAE00000000089;Parent=EPrPRAT00000000089;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1698 . exon 3199 3343 . - . ID=EPrPRAE00000000197;Parent=EPrPRAT00000000197;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1698 ensembl protein_coding_gene 3535 3908 . - . ID=Phyra87229;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1698000001;logic_name=jgi_phyra1 scaffold_1698 ensembl transcript 3535 3908 . - . ID=Phyra87229;Parent=Phyra87229;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1698 . CDS 3535 3906 . - 0 ID=Phyra87229;Parent=Phyra87229;rank=1 scaffold_1698 . exon 3535 3908 . - . ID=Phyra87229.1;Parent=Phyra87229;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1699 1 3953 scaffold_1699 . repeat_region 1069 2308 . ? . description=dust scaffold_1699 . biological_region 2408 2412 0.999 + . logic_name=eponine scaffold_1699 . repeat_region 2597 2637 . ? . description=trf scaffold_1699 ensembl protein_coding_gene 2344 3900 . + . ID=Phyra87230;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1699000001;logic_name=jgi_phyra1 scaffold_1699 ensembl transcript 2344 3900 . + . ID=Phyra87230;Parent=Phyra87230;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1699 . CDS 2344 3900 . + 0 ID=Phyra87230;Parent=Phyra87230;rank=1 scaffold_1699 . exon 2344 3900 . + . ID=Phyra87230.1;Parent=Phyra87230;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1736 1 3958 scaffold_1736 . repeat_region 1320 2110 . ? . description=dust scaffold_1736 ensembl protein_coding_gene 46 348 . + . ID=Phyra87256;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1736000001;logic_name=jgi_phyra1 scaffold_1736 ensembl transcript 46 348 . + . ID=Phyra87256;Parent=Phyra87256;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1736 . CDS 46 348 . + 0 ID=Phyra87256;Parent=Phyra87256;rank=1 scaffold_1736 . exon 46 348 . + . ID=Phyra87256.1;Parent=Phyra87256;constitutive=1;rank=1 scaffold_1736 ensembl protein_coding_gene 465 1286 . - . ID=Phyra87257;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1736000002;logic_name=jgi_phyra1 scaffold_1736 ensembl transcript 465 1286 . - . ID=Phyra87257;Parent=Phyra87257;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1736 . CDS 465 1286 . - 0 ID=Phyra87257;Parent=Phyra87257;rank=1 scaffold_1736 . exon 465 1286 . - . ID=Phyra87257.1;Parent=Phyra87257;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1695 1 3961 scaffold_1695 . repeat_region 1786 2555 . ? . description=dust scaffold_1695 ensembl protein_coding_gene 2697 3452 . - . ID=Phyra72504;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1695000001;logic_name=jgi_phyra1 scaffold_1695 ensembl transcript 2697 3452 . - . ID=Phyra72504;Parent=Phyra72504;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1695 . CDS 2697 3452 . - 0 ID=Phyra72504;Parent=Phyra72504;rank=1 scaffold_1695 . exon 2697 3452 . - . ID=Phyra72504.1;Parent=Phyra72504;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1708 1 3962 scaffold_1708 . repeat_region 845 2274 . ? . description=dust scaffold_1708 . biological_region 2822 2828 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1692 1 3965 scaffold_1692 . repeat_region 1595 2129 . ? . description=dust scaffold_1692 ensembl protein_coding_gene 66 2671 . + . ID=Phyra87226;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1692000001;logic_name=jgi_phyra1 scaffold_1692 ensembl transcript 66 2671 . + . ID=Phyra87226;Parent=Phyra87226;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1692 . CDS 66 1586 . + 0 ID=Phyra87226;Parent=Phyra87226;rank=1 scaffold_1692 . exon 66 1586 . + . ID=Phyra87226.1;Parent=Phyra87226;constitutive=1;rank=1 scaffold_1692 . CDS 2177 2671 . + 0 ID=Phyra87226;Parent=Phyra87226;rank=2 scaffold_1692 . exon 2177 2671 . + . ID=Phyra87226.2;Parent=Phyra87226;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1450 1 3967 scaffold_1450 . repeat_region 1440 1459 . ? . description=trf scaffold_1450 ensembl protein_coding_gene 2818 3826 . - . ID=Phyra87002;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1450000001;logic_name=jgi_phyra1 scaffold_1450 ensembl transcript 2818 3826 . - . ID=Phyra87002;Parent=Phyra87002;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1450 . CDS 2818 2877 . - 0 ID=Phyra87002;Parent=Phyra87002;rank=2 scaffold_1450 . exon 2818 2877 . - . ID=Phyra87002.2;Parent=Phyra87002;constitutive=1;rank=2 scaffold_1450 . CDS 2945 3826 . - 0 ID=Phyra87002;Parent=Phyra87002;rank=1 scaffold_1450 . exon 2945 3826 . - . ID=Phyra87002.1;Parent=Phyra87002;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1689 1 3968 scaffold_1689 . biological_region 771 772 0.999 - . logic_name=eponine scaffold_1689 . biological_region 980 983 0.999 + . logic_name=eponine scaffold_1689 . biological_region 1064 1065 0.999 - . logic_name=eponine scaffold_1689 . repeat_region 1934 2810 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1688 1 3970 scaffold_1688 . repeat_region 121 170 . ? . description=trf scaffold_1688 . repeat_region 392 432 . ? . description=trf scaffold_1688 . repeat_region 397 432 . ? . description=trf scaffold_1688 . biological_region 443 450 0.999 - . logic_name=eponine scaffold_1688 . repeat_region 1737 3178 . ? . description=dust scaffold_1688 . repeat_region 3320 3379 . ? . description=dust scaffold_1688 . repeat_region 3322 3379 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1687 1 3971 scaffold_1687 . repeat_region 273 315 . ? . description=trf scaffold_1687 . repeat_region 414 460 . ? . description=trf scaffold_1687 . repeat_region 1542 2376 . ? . description=dust scaffold_1687 ensembl protein_coding_gene 2561 3706 . + . ID=Phyra72502;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1687000001;logic_name=jgi_phyra1 scaffold_1687 ensembl transcript 2561 3706 . + . ID=Phyra72502;Parent=Phyra72502;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1687 . CDS 2561 3706 . + 0 ID=Phyra72502;Parent=Phyra72502;rank=1 scaffold_1687 . exon 2561 3706 . + . ID=Phyra72502.1;Parent=Phyra72502;constitutive=1;rank=1 scaffold_1687 ensembl protein_coding_gene 369 1537 . + . ID=Phyra87222;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1687000001;logic_name=jgi_phyra1 scaffold_1687 ensembl transcript 369 1537 . + . ID=Phyra87222;Parent=Phyra87222;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1687 . CDS 369 418 . + 0 ID=Phyra87222;Parent=Phyra87222;rank=1 scaffold_1687 . exon 369 418 . + . ID=Phyra87222.1;Parent=Phyra87222;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1687 . CDS 537 1537 . + 0 ID=Phyra87222;Parent=Phyra87222;rank=2 scaffold_1687 . exon 537 1537 . + . ID=Phyra87222.2;Parent=Phyra87222;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1685 1 3973 scaffold_1685 . biological_region 989 993 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1686 1 3973 scaffold_1686 . biological_region 263 265 0.999 + . logic_name=eponine scaffold_1686 . repeat_region 896 1830 . ? . description=dust scaffold_1686 . repeat_region 3172 3234 . ? . description=trf scaffold_1686 . repeat_region 3624 3640 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1903 1 3975 scaffold_1903 . repeat_region 749 791 . ? . description=trf scaffold_1903 . repeat_region 1152 2998 . ? . description=dust scaffold_1903 . biological_region 3785 3789 0.999 + . logic_name=eponine scaffold_1903 . biological_region 3836 3841 0.999 + . logic_name=eponine scaffold_1903 . biological_region 3865 3865 0.999 - . logic_name=eponine scaffold_1903 . biological_region 3902 3903 0.999 - . logic_name=eponine scaffold_1903 ensembl protein_coding_gene 11 655 . + . ID=Phyra72522;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1903000001;logic_name=jgi_phyra1 scaffold_1903 ensembl transcript 11 655 . + . ID=Phyra72522;Parent=Phyra72522;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1903 . CDS 11 655 . + 0 ID=Phyra72522;Parent=Phyra72522;rank=1 scaffold_1903 . exon 11 655 . + . ID=Phyra72522.1;Parent=Phyra72522;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1683 1 3976 scaffold_1683 . biological_region 1752 1754 0.999 - . logic_name=eponine scaffold_1683 ensembl protein_coding_gene 18 2318 . - . ID=Phyra87219;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1683000001;logic_name=jgi_phyra1 scaffold_1683 ensembl transcript 18 2318 . - . ID=Phyra87219;Parent=Phyra87219;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1683 . CDS 18 576 . - 0 ID=Phyra87219;Parent=Phyra87219;rank=4 scaffold_1683 . exon 18 576 . - . ID=Phyra87219.4;Parent=Phyra87219;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1683 . CDS 641 860 . - 0 ID=Phyra87219;Parent=Phyra87219;rank=3 scaffold_1683 . exon 641 860 . - . ID=Phyra87219.3;Parent=Phyra87219;constitutive=1;ensembl_phase=2;rank=3 scaffold_1683 . CDS 1115 2007 . - 0 ID=Phyra87219;Parent=Phyra87219;rank=2 scaffold_1683 . exon 1115 2007 . - . ID=Phyra87219.2;Parent=Phyra87219;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1683 . CDS 2100 2318 . - 0 ID=Phyra87219;Parent=Phyra87219;rank=1 scaffold_1683 . exon 2100 2318 . - . ID=Phyra87219.1;Parent=Phyra87219;constitutive=1;rank=1 scaffold_1683 ensembl protein_coding_gene 2707 3619 . + . ID=Phyra87220;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1683000002;logic_name=jgi_phyra1 scaffold_1683 ensembl transcript 2707 3619 . + . ID=Phyra87220;Parent=Phyra87220;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1683 . CDS 2707 2767 . + 0 ID=Phyra87220;Parent=Phyra87220;rank=1 scaffold_1683 . exon 2707 2767 . + . ID=Phyra87220.1;Parent=Phyra87220;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1683 . CDS 2860 3093 . + 0 ID=Phyra87220;Parent=Phyra87220;rank=2 scaffold_1683 . exon 2860 3093 . + . ID=Phyra87220.2;Parent=Phyra87220;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1683 . CDS 3193 3324 . + 0 ID=Phyra87220;Parent=Phyra87220;rank=3 scaffold_1683 . exon 3193 3324 . + . ID=Phyra87220.3;Parent=Phyra87220;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1683 . CDS 3405 3619 . + 0 ID=Phyra87220;Parent=Phyra87220;rank=4 scaffold_1683 . exon 3405 3619 . + . ID=Phyra87220.4;Parent=Phyra87220;constitutive=1;ensembl_phase=1;rank=4 ##gff-version 3 ##sequence-region scaffold_1845 1 3976 scaffold_1845 . repeat_region 1264 1283 . ? . description=trf scaffold_1845 . biological_region 1318 1322 0.999 + . logic_name=eponine scaffold_1845 . repeat_region 1413 2787 . ? . description=dust scaffold_1845 . biological_region 2971 2975 0.999 - . logic_name=eponine scaffold_1845 . biological_region 3240 3242 0.999 + . logic_name=eponine scaffold_1845 . repeat_region 3248 3291 . ? . description=trf scaffold_1845 . repeat_region 3665 3749 . ? . description=trf scaffold_1845 . repeat_region 3857 3905 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1684 1 3979 scaffold_1684 . biological_region 1539 1539 0.999 - . logic_name=eponine scaffold_1684 . repeat_region 2185 2908 . ? . description=dust scaffold_1684 ensembl protein_coding_gene 290 1545 . + . ID=Phyra87221;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1684000001;logic_name=jgi_phyra1 scaffold_1684 ensembl transcript 290 1545 . + . ID=Phyra87221;Parent=Phyra87221;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1684 . CDS 290 443 . + 0 ID=Phyra87221;Parent=Phyra87221;rank=1 scaffold_1684 . exon 290 443 . + . ID=Phyra87221.1;Parent=Phyra87221;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1684 . CDS 527 1545 . + 0 ID=Phyra87221;Parent=Phyra87221;rank=2 scaffold_1684 . exon 527 1545 . + . ID=Phyra87221.2;Parent=Phyra87221;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1679 1 3981 scaffold_1679 . repeat_region 1771 2563 . ? . description=dust scaffold_1679 . biological_region 2976 2977 0.999 - . logic_name=eponine scaffold_1679 ensembl protein_coding_gene 1250 1741 . + . ID=Phyra42787;biotype=protein_coding;external_name=gwEuk.1679.2.1;logic_name=jgi_phyra1 scaffold_1679 ensembl transcript 1250 1741 . + . ID=Phyra42787;Parent=Phyra42787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1679 . CDS 1250 1741 . + 0 ID=Phyra42787;Parent=Phyra42787;rank=1 scaffold_1679 . exon 1250 1741 . + . ID=Phyra42787.1;Parent=Phyra42787;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1693 1 3982 scaffold_1693 . repeat_region 443 475 . ? . description=trf scaffold_1693 . repeat_region 471 647 . + . description=(CAT)n scaffold_1693 . biological_region 477 478 0.999 - . logic_name=eponine scaffold_1693 . repeat_region 545 608 . ? . description=dust scaffold_1693 . repeat_region 1415 2110 . ? . description=dust scaffold_1693 . repeat_region 2775 2822 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1680 1 3983 scaffold_1680 . repeat_region 1052 2080 . ? . description=dust scaffold_1680 ensembl protein_coding_gene 115 3922 . - . ID=Phyra87214;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1680000001;logic_name=jgi_phyra1 scaffold_1680 ensembl transcript 115 3922 . - . ID=Phyra87214;Parent=Phyra87214;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1680 . CDS 115 985 . - 0 ID=Phyra87214;Parent=Phyra87214;rank=2 scaffold_1680 . exon 115 985 . - . ID=Phyra87214.2;Parent=Phyra87214;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1680 . CDS 2114 3922 . - 0 ID=Phyra87214;Parent=Phyra87214;rank=1 scaffold_1680 . exon 2114 3922 . - . ID=Phyra87214.1;Parent=Phyra87214;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1678 1 3984 scaffold_1678 . repeat_region 2302 3115 . ? . description=dust scaffold_1678 . biological_region 3289 3291 0.999 + . logic_name=eponine scaffold_1678 . biological_region 3311 3312 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1677 1 3985 scaffold_1677 . biological_region 188 191 0.999 + . logic_name=eponine scaffold_1677 . biological_region 300 300 0.999 + . logic_name=eponine scaffold_1677 . repeat_region 833 935 . + . description=GypsyPi-1c_I-int scaffold_1677 . repeat_region 963 2882 . ? . description=dust scaffold_1677 . repeat_region 2884 3977 . + . description=GypsyPi-1c_I-int scaffold_1677 ensembl protein_coding_gene 3655 3981 . + . ID=Phyra42785;biotype=protein_coding;external_name=gwEuk.1677.3.1;logic_name=jgi_phyra1 scaffold_1677 ensembl transcript 3655 3981 . + . ID=Phyra42785;Parent=Phyra42785;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1677 . CDS 3655 3981 . + 0 ID=Phyra42785;Parent=Phyra42785;rank=1 scaffold_1677 . exon 3655 3981 . + . ID=Phyra42785.1;Parent=Phyra42785;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1676 1 3986 scaffold_1676 . repeat_region 9 17 . ? . description=dust scaffold_1676 . repeat_region 1021 1574 . - . description=GypsyPi-1c_I-int scaffold_1676 . repeat_region 1593 2398 . ? . description=dust scaffold_1676 . biological_region 2749 2752 0.999 + . logic_name=eponine scaffold_1676 . biological_region 3189 3193 0.999 + . logic_name=eponine scaffold_1676 . biological_region 3292 3294 0.999 + . logic_name=eponine scaffold_1676 . repeat_region 3867 3969 . + . description=GypsyPi-1c_I-int scaffold_1676 ensembl protein_coding_gene 1014 1334 . - . ID=Phyra42782;biotype=protein_coding;external_name=gwEuk.1676.3.1;logic_name=jgi_phyra1 scaffold_1676 ensembl transcript 1014 1334 . - . ID=Phyra42782;Parent=Phyra42782;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1676 . CDS 1014 1334 . - 0 ID=Phyra42782;Parent=Phyra42782;rank=1 scaffold_1676 . exon 1014 1334 . - . ID=Phyra42782.1;Parent=Phyra42782;constitutive=1;rank=1 scaffold_1676 ensembl protein_coding_gene 3181 3936 . + . ID=Phyra87212;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1676000001;logic_name=jgi_phyra1 scaffold_1676 ensembl transcript 3181 3936 . + . ID=Phyra87212;Parent=Phyra87212;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1676 . CDS 3181 3472 . + 0 ID=Phyra87212;Parent=Phyra87212;rank=1 scaffold_1676 . exon 3181 3472 . + . ID=Phyra87212.1;Parent=Phyra87212;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1676 . CDS 3595 3936 . + 0 ID=Phyra87212;Parent=Phyra87212;rank=2 scaffold_1676 . exon 3595 3936 . + . ID=Phyra87212.2;Parent=Phyra87212;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1673 1 3988 scaffold_1673 . repeat_region 1025 2492 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1710 1 3988 scaffold_1710 . repeat_region 1134 1183 . ? . description=dust scaffold_1710 . repeat_region 1797 1839 . ? . description=trf scaffold_1710 . repeat_region 1951 2643 . ? . description=dust scaffold_1710 ensembl protein_coding_gene 74 3980 . + . ID=Phyra87240;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1710000001;logic_name=jgi_phyra1 scaffold_1710 ensembl transcript 74 3980 . + . ID=Phyra87240;Parent=Phyra87240;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1710 . CDS 74 1127 . + 0 ID=Phyra87240;Parent=Phyra87240;rank=1 scaffold_1710 . exon 74 1127 . + . ID=Phyra87240.1;Parent=Phyra87240;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1710 . CDS 2675 3142 . + 0 ID=Phyra87240;Parent=Phyra87240;rank=2 scaffold_1710 . exon 2675 3142 . + . ID=Phyra87240.2;Parent=Phyra87240;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1710 . CDS 3167 3354 . + 0 ID=Phyra87240;Parent=Phyra87240;rank=3 scaffold_1710 . exon 3167 3354 . + . ID=Phyra87240.3;Parent=Phyra87240;constitutive=1;ensembl_phase=1;rank=3 scaffold_1710 . CDS 3379 3980 . + 0 ID=Phyra87240;Parent=Phyra87240;rank=4 scaffold_1710 . exon 3379 3980 . + . ID=Phyra87240.4;Parent=Phyra87240;constitutive=1;ensembl_end_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_1670 1 3989 scaffold_1670 . repeat_region 1315 1332 . ? . description=dust scaffold_1670 . repeat_region 1482 2362 . ? . description=dust scaffold_1670 . biological_region 2855 2859 0.999 - . logic_name=eponine scaffold_1670 . repeat_region 2929 2974 . ? . description=trf scaffold_1670 . biological_region 3580 3585 0.999 - . logic_name=eponine scaffold_1670 ensembl protein_coding_gene 2538 3904 . + . ID=Phyra87206;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1670000001;logic_name=jgi_phyra1 scaffold_1670 ensembl transcript 2538 3904 . + . ID=Phyra87206;Parent=Phyra87206;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1670 . CDS 2538 3904 . + 0 ID=Phyra87206;Parent=Phyra87206;rank=1 scaffold_1670 . exon 2538 3904 . + . ID=Phyra87206.1;Parent=Phyra87206;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1696 1 3991 scaffold_1696 . biological_region 599 603 0.999 + . logic_name=eponine scaffold_1696 . repeat_region 1299 1539 . + . description=GypsyPi-1c_LTR scaffold_1696 . repeat_region 1542 2382 . ? . description=dust scaffold_1696 . repeat_region 2383 3452 . + . description=GypsyPi-1c_I-int scaffold_1696 . biological_region 3118 3122 0.999 + . logic_name=eponine scaffold_1696 . repeat_region 3489 3752 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1703 1 3991 scaffold_1703 . repeat_region 1007 1048 . ? . description=trf scaffold_1703 . repeat_region 1297 1339 . ? . description=trf scaffold_1703 . repeat_region 1438 1484 . ? . description=trf scaffold_1703 . repeat_region 1791 2982 . ? . description=dust scaffold_1703 ensembl protein_coding_gene 59 714 . - . ID=Phyra87232;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1703000001;logic_name=jgi_phyra1 scaffold_1703 ensembl transcript 59 714 . - . ID=Phyra87232;Parent=Phyra87232;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1703 . CDS 59 714 . - 0 ID=Phyra87232;Parent=Phyra87232;rank=1 scaffold_1703 . exon 59 714 . - . ID=Phyra87232.1;Parent=Phyra87232;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1703 ensembl protein_coding_gene 1571 3974 . + . ID=Phyra87233;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1703000002;logic_name=jgi_phyra1 scaffold_1703 ensembl transcript 1571 3974 . + . ID=Phyra87233;Parent=Phyra87233;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1703 . CDS 1571 1788 . + 0 ID=Phyra87233;Parent=Phyra87233;rank=1 scaffold_1703 . exon 1571 1788 . + . ID=Phyra87233.1;Parent=Phyra87233;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1703 . CDS 2987 3974 . + 0 ID=Phyra87233;Parent=Phyra87233;rank=2 scaffold_1703 . exon 2987 3974 . + . ID=Phyra87233.2;Parent=Phyra87233;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1669 1 3992 scaffold_1669 . biological_region 2483 2484 0.999 - . logic_name=eponine scaffold_1669 ensembl protein_coding_gene 13 1020 . - . ID=Phyra42765;biotype=protein_coding;external_name=gwEuk.1669.4.1;logic_name=jgi_phyra1 scaffold_1669 ensembl transcript 13 1020 . - . ID=Phyra42765;Parent=Phyra42765;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1669 . CDS 13 1020 . - 0 ID=Phyra42765;Parent=Phyra42765;rank=1 scaffold_1669 . exon 13 1020 . - . ID=Phyra42765.1;Parent=Phyra42765;constitutive=1;rank=1 scaffold_1669 ensembl protein_coding_gene 1465 3486 . - . ID=Phyra87205;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1669000002;logic_name=jgi_phyra1 scaffold_1669 ensembl transcript 1465 3486 . - . ID=Phyra87205;Parent=Phyra87205;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1669 . CDS 1465 3486 . - 0 ID=Phyra87205;Parent=Phyra87205;rank=1 scaffold_1669 . exon 1465 3486 . - . ID=Phyra87205.1;Parent=Phyra87205;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1639 1 3999 scaffold_1639 ensembl protein_coding_gene 176 907 . + . ID=Phyra87179;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1639000001;logic_name=jgi_phyra1 scaffold_1639 ensembl transcript 176 907 . + . ID=Phyra87179;Parent=Phyra87179;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1639 . CDS 176 907 . + 0 ID=Phyra87179;Parent=Phyra87179;rank=1 scaffold_1639 . exon 176 907 . + . ID=Phyra87179.1;Parent=Phyra87179;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1666 1 3999 scaffold_1666 . biological_region 853 856 0.999 + . logic_name=eponine scaffold_1666 . repeat_region 2057 2615 . ? . description=dust scaffold_1666 . biological_region 2765 2769 0.999 - . logic_name=eponine scaffold_1666 ensembl protein_coding_gene 557 3133 . - . ID=Phyra42759;biotype=protein_coding;description=Cellulose binding elicitor lectin [Source:UniProtKB/TrEMBL%3BAcc:B2ZU23];external_name=CBEL;logic_name=jgi_phyra1 scaffold_1666 ensembl transcript 557 3133 . - . ID=Phyra42759;Parent=Phyra42759;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1666 . CDS 557 852 . - 0 ID=Phyra42759;Parent=Phyra42759;rank=2 scaffold_1666 . exon 557 852 . - . ID=Phyra42759.2;Parent=Phyra42759;constitutive=1;ensembl_phase=1;rank=2 scaffold_1666 . CDS 2620 3133 . - 0 ID=Phyra42759;Parent=Phyra42759;rank=1 scaffold_1666 . exon 2620 3133 . - . ID=Phyra42759.1;Parent=Phyra42759;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1665 1 4000 ##gff-version 3 ##sequence-region scaffold_1624 1 4002 scaffold_1624 . biological_region 130 132 0.999 + . logic_name=eponine scaffold_1624 . biological_region 680 682 0.999 - . logic_name=eponine scaffold_1624 . biological_region 735 738 0.999 + . logic_name=eponine scaffold_1624 . repeat_region 2732 2773 . ? . description=trf scaffold_1624 . repeat_region 3880 3922 . ? . description=trf scaffold_1624 ensembl protein_coding_gene 2873 3829 . + . ID=Phyra72497;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1624000001;logic_name=jgi_phyra1 scaffold_1624 ensembl transcript 2873 3829 . + . ID=Phyra72497;Parent=Phyra72497;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1624 . CDS 2873 3829 . + 0 ID=Phyra72497;Parent=Phyra72497;rank=1 scaffold_1624 . exon 2873 3829 . + . ID=Phyra72497.1;Parent=Phyra72497;constitutive=1;rank=1 scaffold_1624 ensembl protein_coding_gene 11 1662 . - . ID=Phyra87164;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1624000001;logic_name=jgi_phyra1 scaffold_1624 ensembl transcript 11 1662 . - . ID=Phyra87164;Parent=Phyra87164;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1624 . CDS 11 433 . - 0 ID=Phyra87164;Parent=Phyra87164;rank=3 scaffold_1624 . exon 11 433 . - . ID=Phyra87164.3;Parent=Phyra87164;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1624 . CDS 501 1500 . - 0 ID=Phyra87164;Parent=Phyra87164;rank=2 scaffold_1624 . exon 501 1500 . - . ID=Phyra87164.2;Parent=Phyra87164;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1624 . CDS 1591 1662 . - 0 ID=Phyra87164;Parent=Phyra87164;rank=1 scaffold_1624 . exon 1591 1662 . - . ID=Phyra87164.1;Parent=Phyra87164;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1667 1 4002 scaffold_1667 . repeat_region 2 91 . ? . description=trf scaffold_1667 . biological_region 92 97 0.999 + . logic_name=eponine scaffold_1667 . repeat_region 378 513 . - . description=GypsyPi-1c_I-int scaffold_1667 . biological_region 828 829 0.999 - . logic_name=eponine scaffold_1667 . biological_region 959 964 0.999 - . logic_name=eponine scaffold_1667 . repeat_region 1587 2184 . ? . description=dust scaffold_1667 . biological_region 2857 2863 0.999 - . logic_name=eponine scaffold_1667 . biological_region 3044 3045 0.999 - . logic_name=eponine scaffold_1667 ensembl protein_coding_gene 2383 3984 . + . ID=Phyra87202;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1667000001;logic_name=jgi_phyra1 scaffold_1667 ensembl transcript 2383 3984 . + . ID=Phyra87202;Parent=Phyra87202;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1667 . CDS 2383 3984 . + 0 ID=Phyra87202;Parent=Phyra87202;rank=1 scaffold_1667 . exon 2383 3984 . + . ID=Phyra87202.1;Parent=Phyra87202;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1691 1 4004 scaffold_1691 . repeat_region 1370 1394 . ? . description=trf scaffold_1691 . repeat_region 1370 1394 . ? . description=dust scaffold_1691 . repeat_region 1408 2478 . ? . description=dust scaffold_1691 . biological_region 2869 2873 0.999 - . logic_name=eponine scaffold_1691 . biological_region 3309 3310 0.999 + . logic_name=eponine scaffold_1691 . biological_region 3329 3330 0.999 - . logic_name=eponine scaffold_1691 ensembl protein_coding_gene 3159 3740 . - . ID=Phyra72503;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1691000001;logic_name=jgi_phyra1 scaffold_1691 ensembl transcript 3159 3740 . - . ID=Phyra72503;Parent=Phyra72503;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1691 . CDS 3159 3740 . - 0 ID=Phyra72503;Parent=Phyra72503;rank=1 scaffold_1691 . exon 3159 3740 . - . ID=Phyra72503.1;Parent=Phyra72503;constitutive=1;rank=1 scaffold_1691 ensembl protein_coding_gene 6 883 . - . ID=Phyra87224;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1691000001;logic_name=jgi_phyra1 scaffold_1691 ensembl transcript 6 883 . - . ID=Phyra87224;Parent=Phyra87224;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1691 . CDS 6 416 . - 0 ID=Phyra87224;Parent=Phyra87224;rank=2 scaffold_1691 . exon 6 416 . - . ID=Phyra87224.2;Parent=Phyra87224;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1691 . CDS 490 883 . - 0 ID=Phyra87224;Parent=Phyra87224;rank=1 scaffold_1691 . exon 490 883 . - . ID=Phyra87224.1;Parent=Phyra87224;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1661 1 4005 scaffold_1661 . repeat_region 1 480 . - . description=GypsyPi-1c_I-int scaffold_1661 . biological_region 1005 1009 0.999 - . logic_name=eponine scaffold_1661 . biological_region 1044 1047 0.999 + . logic_name=eponine scaffold_1661 . biological_region 1082 1083 0.999 + . logic_name=eponine scaffold_1661 . biological_region 1107 1112 0.999 - . logic_name=eponine scaffold_1661 . biological_region 1159 1163 0.999 - . logic_name=eponine scaffold_1661 . biological_region 1217 1218 0.999 - . logic_name=eponine scaffold_1661 . repeat_region 2109 2774 . ? . description=dust scaffold_1661 . repeat_region 3720 3728 . ? . description=dust scaffold_1661 . repeat_region 3840 4005 . - . description=Gypsy-1-I_PI-int scaffold_1661 ensembl protein_coding_gene 25 1118 . - . ID=Phyra87199;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1661000001;logic_name=jgi_phyra1 scaffold_1661 ensembl transcript 25 1118 . - . ID=Phyra87199;Parent=Phyra87199;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1661 . CDS 25 1118 . - 0 ID=Phyra87199;Parent=Phyra87199;rank=1 scaffold_1661 . exon 25 1118 . - . ID=Phyra87199.1;Parent=Phyra87199;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1662 1 4006 scaffold_1662 . repeat_region 1660 2584 . ? . description=dust scaffold_1662 . repeat_region 3736 3971 . - . description=GypsyPi-1c_LTR ##gff-version 3 ##sequence-region scaffold_1660 1 4009 scaffold_1660 . repeat_region 933 942 . ? . description=dust scaffold_1660 . repeat_region 1583 2501 . ? . description=dust scaffold_1660 . repeat_region 3310 3322 . ? . description=dust scaffold_1660 . repeat_region 3931 3948 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1746 1 4009 scaffold_1746 . repeat_region 1621 2465 . ? . description=dust scaffold_1746 . repeat_region 2785 2854 . ? . description=dust scaffold_1746 . repeat_region 3745 3792 . ? . description=trf scaffold_1746 . repeat_region 3745 3801 . ? . description=dust scaffold_1746 ensembl protein_coding_gene 2493 3796 . + . ID=Phyra87268;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1746000001;logic_name=jgi_phyra1 scaffold_1746 ensembl transcript 2493 3796 . + . ID=Phyra87268;Parent=Phyra87268;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1746 . CDS 2493 2985 . + 0 ID=Phyra87268;Parent=Phyra87268;rank=1 scaffold_1746 . exon 2493 2985 . + . ID=Phyra87268.1;Parent=Phyra87268;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1746 . CDS 3050 3534 . + 0 ID=Phyra87268;Parent=Phyra87268;rank=2 scaffold_1746 . exon 3050 3534 . + . ID=Phyra87268.2;Parent=Phyra87268;constitutive=1;ensembl_phase=1;rank=2 scaffold_1746 . CDS 3596 3796 . + 0 ID=Phyra87268;Parent=Phyra87268;rank=3 scaffold_1746 . exon 3596 3796 . + . ID=Phyra87268.3;Parent=Phyra87268;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1744 1 4010 scaffold_1744 . repeat_region 207 222 . ? . description=dust scaffold_1744 . repeat_region 3719 3761 . ? . description=trf scaffold_1744 . repeat_region 3944 3952 . ? . description=dust scaffold_1744 ensembl protein_coding_gene 2402 3378 . - . ID=Phyra87267;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1744000001;logic_name=jgi_phyra1 scaffold_1744 ensembl transcript 2402 3378 . - . ID=Phyra87267;Parent=Phyra87267;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1744 . CDS 2402 2656 . - 0 ID=Phyra87267;Parent=Phyra87267;rank=2 scaffold_1744 . exon 2402 2656 . - . ID=Phyra87267.2;Parent=Phyra87267;constitutive=1;rank=2 scaffold_1744 . CDS 2716 3378 . - 0 ID=Phyra87267;Parent=Phyra87267;rank=1 scaffold_1744 . exon 2716 3378 . - . ID=Phyra87267.1;Parent=Phyra87267;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1659 1 4013 scaffold_1659 . biological_region 470 472 0.999 - . logic_name=eponine scaffold_1659 . repeat_region 838 891 . ? . description=trf scaffold_1659 . repeat_region 917 925 . ? . description=dust scaffold_1659 . repeat_region 996 1237 . ? . description=trf scaffold_1659 . repeat_region 1219 1249 . ? . description=trf scaffold_1659 . repeat_region 1657 2625 . ? . description=dust scaffold_1659 ensembl protein_coding_gene 2966 3502 . - . ID=Phyra87198;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1659000001;logic_name=jgi_phyra1 scaffold_1659 ensembl transcript 2966 3502 . - . ID=Phyra87198;Parent=Phyra87198;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1659 . CDS 2966 3502 . - 0 ID=Phyra87198;Parent=Phyra87198;rank=1 scaffold_1659 . exon 2966 3502 . - . ID=Phyra87198.1;Parent=Phyra87198;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1658 1 4020 scaffold_1658 . repeat_region 888 919 . ? . description=dust scaffold_1658 . repeat_region 1049 2344 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1656 1 4026 scaffold_1656 . repeat_region 1742 3272 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1654 1 4028 scaffold_1654 . repeat_region 1923 2696 . ? . description=dust scaffold_1654 . biological_region 3205 3205 0.999 - . logic_name=eponine scaffold_1654 . repeat_region 3572 4028 . ? . description=trf scaffold_1654 . repeat_region 3596 4028 . ? . description=trf scaffold_1654 . repeat_region 3596 4028 . ? . description=trf scaffold_1654 ensembl protein_coding_gene 257 1702 . - . ID=Phyra87195;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1654000001;logic_name=jgi_phyra1 scaffold_1654 ensembl transcript 257 1702 . - . ID=Phyra87195;Parent=Phyra87195;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1654 . CDS 257 448 . - 0 ID=Phyra87195;Parent=Phyra87195;rank=3 scaffold_1654 . exon 257 448 . - . ID=Phyra87195.3;Parent=Phyra87195;constitutive=1;rank=3 scaffold_1654 . CDS 521 578 . - 0 ID=Phyra87195;Parent=Phyra87195;rank=2 scaffold_1654 . exon 521 578 . - . ID=Phyra87195.2;Parent=Phyra87195;constitutive=1;ensembl_phase=2;rank=2 scaffold_1654 . CDS 606 1702 . - 0 ID=Phyra87195;Parent=Phyra87195;rank=1 scaffold_1654 . exon 606 1702 . - . ID=Phyra87195.1;Parent=Phyra87195;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1654 ensembl protein_coding_gene 2995 3525 . + . ID=Phyra87196;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1654000002;logic_name=jgi_phyra1 scaffold_1654 ensembl transcript 2995 3525 . + . ID=Phyra87196;Parent=Phyra87196;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1654 . CDS 2995 3525 . + 0 ID=Phyra87196;Parent=Phyra87196;rank=1 scaffold_1654 . exon 2995 3525 . + . ID=Phyra87196.1;Parent=Phyra87196;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1986 1 4028 scaffold_1986 . repeat_region 1200 2871 . ? . description=dust scaffold_1986 ensembl protein_coding_gene 81 1023 . + . ID=Phyra87437;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1986000001;logic_name=jgi_phyra1 scaffold_1986 ensembl transcript 81 1023 . + . ID=Phyra87437;Parent=Phyra87437;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1986 . CDS 81 973 . + 0 ID=Phyra87437;Parent=Phyra87437;rank=1 scaffold_1986 . exon 81 973 . + . ID=Phyra87437.1;Parent=Phyra87437;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1986 . CDS 1002 1023 . + 0 ID=Phyra87437;Parent=Phyra87437;rank=2 scaffold_1986 . exon 1002 1023 . + . ID=Phyra87437.2;Parent=Phyra87437;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1653 1 4029 scaffold_1653 . biological_region 4 6 0.999 + . logic_name=eponine scaffold_1653 . repeat_region 1590 2488 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1655 1 4029 scaffold_1655 . biological_region 1816 1818 0.999 - . logic_name=eponine scaffold_1655 . biological_region 1823 1827 0.999 + . logic_name=eponine scaffold_1655 . biological_region 1899 1901 0.999 - . logic_name=eponine scaffold_1655 . biological_region 1954 1958 0.999 + . logic_name=eponine scaffold_1655 . biological_region 2003 2006 0.999 - . logic_name=eponine scaffold_1655 . repeat_region 2198 2542 . ? . description=dust scaffold_1655 ensembl protein_coding_gene 1104 2141 . - . ID=Phyra87197;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1655000001;logic_name=jgi_phyra1 scaffold_1655 ensembl transcript 1104 2141 . - . ID=Phyra87197;Parent=Phyra87197;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1655 . CDS 1104 2141 . - 0 ID=Phyra87197;Parent=Phyra87197;rank=1 scaffold_1655 . exon 1104 2141 . - . ID=Phyra87197.1;Parent=Phyra87197;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1934 1 4030 scaffold_1934 . biological_region 236 238 0.999 + . logic_name=eponine scaffold_1934 . repeat_region 1512 2744 . ? . description=dust scaffold_1934 ensembl protein_coding_gene 118 963 . + . ID=Phyra87404;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1934000001;logic_name=jgi_phyra1 scaffold_1934 ensembl transcript 118 963 . + . ID=Phyra87404;Parent=Phyra87404;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1934 . CDS 118 963 . + 0 ID=Phyra87404;Parent=Phyra87404;rank=1 scaffold_1934 . exon 118 963 . + . ID=Phyra87404.1;Parent=Phyra87404;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1652 1 4032 scaffold_1652 . repeat_region 111 153 . ? . description=trf scaffold_1652 . repeat_region 841 2765 . ? . description=dust scaffold_1652 . biological_region 3086 3090 0.999 + . logic_name=eponine scaffold_1652 ensembl protein_coding_gene 204 4032 . - . ID=Phyra87194;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1652000001;logic_name=jgi_phyra1 scaffold_1652 ensembl transcript 204 4032 . - . ID=Phyra87194;Parent=Phyra87194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1652 . CDS 204 556 . - 0 ID=Phyra87194;Parent=Phyra87194;rank=2 scaffold_1652 . exon 204 556 . - . ID=Phyra87194.2;Parent=Phyra87194;constitutive=1;ensembl_phase=1;rank=2 scaffold_1652 . CDS 2820 4032 . - 0 ID=Phyra87194;Parent=Phyra87194;rank=1 scaffold_1652 . exon 2820 4032 . - . ID=Phyra87194.1;Parent=Phyra87194;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1651 1 4036 scaffold_1651 . repeat_region 1678 2601 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1645 1 4037 scaffold_1645 . biological_region 184 185 0.999 + . logic_name=eponine scaffold_1645 ensembl protein_coding_gene 5 361 . + . ID=Phyra87185;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1645000001;logic_name=jgi_phyra1 scaffold_1645 ensembl transcript 5 361 . + . ID=Phyra87185;Parent=Phyra87185;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1645 . CDS 5 361 . + 0 ID=Phyra87185;Parent=Phyra87185;rank=1 scaffold_1645 . exon 5 361 . + . ID=Phyra87185.1;Parent=Phyra87185;constitutive=1;rank=1 scaffold_1645 ensembl protein_coding_gene 1542 2501 . + . ID=Phyra87186;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1645000002;logic_name=jgi_phyra1 scaffold_1645 ensembl transcript 1542 2501 . + . ID=Phyra87186;Parent=Phyra87186;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1645 . CDS 1542 2501 . + 0 ID=Phyra87186;Parent=Phyra87186;rank=1 scaffold_1645 . exon 1542 2501 . + . ID=Phyra87186.1;Parent=Phyra87186;constitutive=1;rank=1 scaffold_1645 ensembl protein_coding_gene 2715 3856 . + . ID=Phyra87187;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1645000003;logic_name=jgi_phyra1 scaffold_1645 ensembl transcript 2715 3856 . + . ID=Phyra87187;Parent=Phyra87187;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1645 . CDS 2715 2995 . + 0 ID=Phyra87187;Parent=Phyra87187;rank=1 scaffold_1645 . exon 2715 2995 . + . ID=Phyra87187.1;Parent=Phyra87187;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1645 . CDS 3064 3332 . + 0 ID=Phyra87187;Parent=Phyra87187;rank=2 scaffold_1645 . exon 3064 3332 . + . ID=Phyra87187.2;Parent=Phyra87187;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1645 . CDS 3392 3856 . + 0 ID=Phyra87187;Parent=Phyra87187;rank=3 scaffold_1645 . exon 3392 3856 . + . ID=Phyra87187.3;Parent=Phyra87187;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1648 1 4037 scaffold_1648 . repeat_region 1713 2667 . ? . description=dust scaffold_1648 ensembl protein_coding_gene 2997 3692 . - . ID=Phyra72500;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1648000001;logic_name=jgi_phyra1 scaffold_1648 ensembl transcript 2997 3692 . - . ID=Phyra72500;Parent=Phyra72500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1648 . CDS 2997 3692 . - 0 ID=Phyra72500;Parent=Phyra72500;rank=1 scaffold_1648 . exon 2997 3692 . - . ID=Phyra72500.1;Parent=Phyra72500;constitutive=1;rank=1 scaffold_1648 ensembl protein_coding_gene 99 741 . + . ID=Phyra87190;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1648000001;logic_name=jgi_phyra1 scaffold_1648 ensembl transcript 99 741 . + . ID=Phyra87190;Parent=Phyra87190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1648 . CDS 99 291 . + 0 ID=Phyra87190;Parent=Phyra87190;rank=1 scaffold_1648 . exon 99 291 . + . ID=Phyra87190.1;Parent=Phyra87190;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1648 . CDS 361 689 . + 0 ID=Phyra87190;Parent=Phyra87190;rank=2 scaffold_1648 . exon 361 689 . + . ID=Phyra87190.2;Parent=Phyra87190;constitutive=1;ensembl_phase=1;rank=2 scaffold_1648 . CDS 727 741 . + 0 ID=Phyra87190;Parent=Phyra87190;rank=3 scaffold_1648 . exon 727 741 . + . ID=Phyra87190.3;Parent=Phyra87190;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1649 1 4040 scaffold_1649 . repeat_region 1791 2461 . ? . description=dust scaffold_1649 ensembl protein_coding_gene 103 2807 . - . ID=Phyra87192;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1649000001;logic_name=jgi_phyra1 scaffold_1649 ensembl transcript 103 2807 . - . ID=Phyra87192;Parent=Phyra87192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1649 . CDS 103 1198 . - 0 ID=Phyra87192;Parent=Phyra87192;rank=3 scaffold_1649 . exon 103 1198 . - . ID=Phyra87192.3;Parent=Phyra87192;constitutive=1;ensembl_phase=2;rank=3 scaffold_1649 . CDS 1270 1757 . - 0 ID=Phyra87192;Parent=Phyra87192;rank=2 scaffold_1649 . exon 1270 1757 . - . ID=Phyra87192.2;Parent=Phyra87192;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1649 . CDS 2505 2807 . - 0 ID=Phyra87192;Parent=Phyra87192;rank=1 scaffold_1649 . exon 2505 2807 . - . ID=Phyra87192.1;Parent=Phyra87192;constitutive=1;rank=1 scaffold_1649 ensembl protein_coding_gene 3410 4036 . + . ID=Phyra87193;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1649000002;logic_name=jgi_phyra1 scaffold_1649 ensembl transcript 3410 4036 . + . ID=Phyra87193;Parent=Phyra87193;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1649 . CDS 3410 4036 . + 0 ID=Phyra87193;Parent=Phyra87193;rank=1 scaffold_1649 . exon 3410 4036 . + . ID=Phyra87193.1;Parent=Phyra87193;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1646 1 4042 scaffold_1646 . repeat_region 25 745 . - . description=GypsyPi-1c_I-int scaffold_1646 . biological_region 1277 1282 0.999 - . logic_name=eponine scaffold_1646 . biological_region 1380 1383 0.999 - . logic_name=eponine scaffold_1646 . repeat_region 1433 2213 . ? . description=dust scaffold_1646 . biological_region 2591 2593 0.999 - . logic_name=eponine scaffold_1646 . repeat_region 3910 3968 . ? . description=dust scaffold_1646 . repeat_region 3911 3945 . ? . description=trf scaffold_1646 . repeat_region 3911 3976 . ? . description=trf scaffold_1646 . repeat_region 3938 3975 . ? . description=trf scaffold_1646 ensembl protein_coding_gene 64 1030 . - . ID=Phyra87188;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1646000001;logic_name=jgi_phyra1 scaffold_1646 ensembl transcript 64 1030 . - . ID=Phyra87188;Parent=Phyra87188;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1646 . CDS 64 688 . - 0 ID=Phyra87188;Parent=Phyra87188;rank=2 scaffold_1646 . exon 64 688 . - . ID=Phyra87188.2;Parent=Phyra87188;constitutive=1;ensembl_phase=2;rank=2 scaffold_1646 . CDS 708 1030 . - 0 ID=Phyra87188;Parent=Phyra87188;rank=1 scaffold_1646 . exon 708 1030 . - . ID=Phyra87188.1;Parent=Phyra87188;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1672 1 4043 scaffold_1672 . biological_region 588 589 0.999 - . logic_name=eponine scaffold_1672 . biological_region 694 697 0.999 - . logic_name=eponine scaffold_1672 . repeat_region 738 2259 . ? . description=dust scaffold_1672 . biological_region 2400 2400 0.999 + . logic_name=eponine scaffold_1672 . biological_region 2469 2469 0.999 - . logic_name=eponine scaffold_1672 . biological_region 2781 2784 0.999 - . logic_name=eponine scaffold_1672 . biological_region 3617 3620 0.999 - . logic_name=eponine scaffold_1672 ensembl snRNA_gene 232 421 . + . ID=EPrPRAG00000000127;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_1672 ensembl snRNA 232 421 . + . ID=EPrPRAT00000000127;Parent=EPrPRAG00000000127;biotype=snRNA;logic_name=ncrna_eg scaffold_1672 . exon 232 421 . + . ID=EPrPRAE00000000127;Parent=EPrPRAT00000000127;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1672 ensembl protein_coding_gene 2707 4014 . + . ID=Phyra87209;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1672000001;logic_name=jgi_phyra1 scaffold_1672 ensembl transcript 2707 4014 . + . ID=Phyra87209;Parent=Phyra87209;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1672 . CDS 2707 4014 . + 0 ID=Phyra87209;Parent=Phyra87209;rank=1 scaffold_1672 . exon 2707 4014 . + . ID=Phyra87209.1;Parent=Phyra87209;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1641 1 4044 scaffold_1641 . repeat_region 7 1348 . - . description=Polinton-1_PI scaffold_1641 . repeat_region 1499 2067 . - . description=Polinton-1_PI scaffold_1641 . repeat_region 1543 1551 . ? . description=dust scaffold_1641 . repeat_region 1773 1780 . ? . description=dust scaffold_1641 . repeat_region 2639 4044 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1644 1 4044 scaffold_1644 . biological_region 602 606 0.999 - . logic_name=eponine scaffold_1644 . repeat_region 1386 2711 . ? . description=dust scaffold_1644 ensembl protein_coding_gene 6 1299 . - . ID=Phyra87183;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1644000001;logic_name=jgi_phyra1 scaffold_1644 ensembl transcript 6 1299 . - . ID=Phyra87183;Parent=Phyra87183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1644 . CDS 6 1299 . - 0 ID=Phyra87183;Parent=Phyra87183;rank=1 scaffold_1644 . exon 6 1299 . - . ID=Phyra87183.1;Parent=Phyra87183;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1644 ensembl protein_coding_gene 3116 4037 . + . ID=Phyra87184;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1644000002;logic_name=jgi_phyra1 scaffold_1644 ensembl transcript 3116 4037 . + . ID=Phyra87184;Parent=Phyra87184;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1644 . CDS 3116 4037 . + 0 ID=Phyra87184;Parent=Phyra87184;rank=1 scaffold_1644 . exon 3116 4037 . + . ID=Phyra87184.1;Parent=Phyra87184;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1650 1 4044 scaffold_1650 . repeat_region 1196 1229 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1415 1 4047 scaffold_1415 . repeat_region 176 202 . ? . description=trf scaffold_1415 . repeat_region 176 202 . ? . description=dust scaffold_1415 . repeat_region 1734 2003 . ? . description=dust scaffold_1415 . repeat_region 2384 2393 . ? . description=dust scaffold_1415 . repeat_region 3779 3800 . ? . description=trf scaffold_1415 ensembl protein_coding_gene 1001 1717 . - . ID=Phyra72477;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1415000001;logic_name=jgi_phyra1 scaffold_1415 ensembl transcript 1001 1717 . - . ID=Phyra72477;Parent=Phyra72477;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1415 . CDS 1001 1717 . - 0 ID=Phyra72477;Parent=Phyra72477;rank=1 scaffold_1415 . exon 1001 1717 . - . ID=Phyra72477.1;Parent=Phyra72477;constitutive=1;rank=1 scaffold_1415 ensembl protein_coding_gene 2597 3316 . + . ID=Phyra86968;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1415000002;logic_name=jgi_phyra1 scaffold_1415 ensembl transcript 2597 3316 . + . ID=Phyra86968;Parent=Phyra86968;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1415 . CDS 2597 3316 . + 0 ID=Phyra86968;Parent=Phyra86968;rank=1 scaffold_1415 . exon 2597 3316 . + . ID=Phyra86968.1;Parent=Phyra86968;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1643 1 4047 scaffold_1643 . repeat_region 1487 2652 . ? . description=dust scaffold_1643 ensembl protein_coding_gene 3016 4040 . + . ID=Phyra87182;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1643000001;logic_name=jgi_phyra1 scaffold_1643 ensembl transcript 3016 4040 . + . ID=Phyra87182;Parent=Phyra87182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1643 . CDS 3016 4040 . + 0 ID=Phyra87182;Parent=Phyra87182;rank=1 scaffold_1643 . exon 3016 4040 . + . ID=Phyra87182.1;Parent=Phyra87182;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1713 1 4049 scaffold_1713 . repeat_region 949 990 . ? . description=trf scaffold_1713 . repeat_region 1846 3267 . ? . description=dust scaffold_1713 . biological_region 3839 3840 0.999 - . logic_name=eponine scaffold_1713 ensembl protein_coding_gene 1084 1812 . - . ID=Phyra72506;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1713000001;logic_name=jgi_phyra1 scaffold_1713 ensembl transcript 1084 1812 . - . ID=Phyra72506;Parent=Phyra72506;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1713 . CDS 1084 1812 . - 0 ID=Phyra72506;Parent=Phyra72506;rank=1 scaffold_1713 . exon 1084 1812 . - . ID=Phyra72506.1;Parent=Phyra72506;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1704 1 4050 scaffold_1704 . biological_region 387 390 0.999 + . logic_name=eponine scaffold_1704 . repeat_region 449 495 . + . description=(CGGA)n scaffold_1704 . repeat_region 452 493 . ? . description=dust scaffold_1704 . repeat_region 459 493 . ? . description=trf scaffold_1704 . biological_region 789 791 0.999 + . logic_name=eponine scaffold_1704 . repeat_region 814 840 . ? . description=trf scaffold_1704 . repeat_region 2207 2832 . ? . description=dust scaffold_1704 . repeat_region 2956 2977 . ? . description=trf scaffold_1704 . repeat_region 3577 3619 . + . description=(CGGA)n scaffold_1704 . repeat_region 3580 3617 . ? . description=dust scaffold_1704 . repeat_region 3587 3617 . ? . description=trf scaffold_1704 . repeat_region 3708 3774 . ? . description=trf scaffold_1704 ensembl pseudogenic_tRNA 3623 3690 . + . ID=EPrPRAG00000000084;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_1704 ensembl transcript 3623 3690 . + . ID=EPrPRAT00000000084;Parent=EPrPRAG00000000084;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_1704 . exon 3623 3690 . + . ID=EPrPRAE00000000084;Parent=EPrPRAT00000000084;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1704 ensembl protein_coding_gene 1377 1820 . - . ID=Phyra72505;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1704000001;logic_name=jgi_phyra1 scaffold_1704 ensembl transcript 1377 1820 . - . ID=Phyra72505;Parent=Phyra72505;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1704 . CDS 1377 1820 . - 0 ID=Phyra72505;Parent=Phyra72505;rank=1 scaffold_1704 . exon 1377 1820 . - . ID=Phyra72505.1;Parent=Phyra72505;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1640 1 4051 scaffold_1640 . repeat_region 1153 1954 . ? . description=dust scaffold_1640 . repeat_region 1955 2314 . ? . description=trf scaffold_1640 . repeat_region 2308 2878 . ? . description=trf scaffold_1640 . repeat_region 2308 2914 . ? . description=trf scaffold_1640 . repeat_region 2987 4048 . ? . description=trf scaffold_1640 . repeat_region 3107 4048 . ? . description=trf scaffold_1640 . biological_region 3737 3738 0.999 - . logic_name=eponine scaffold_1640 . biological_region 3957 3961 0.999 - . logic_name=eponine scaffold_1640 ensembl protein_coding_gene 922 3959 . - . ID=Phyra87180;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1640000001;logic_name=jgi_phyra1 scaffold_1640 ensembl transcript 922 3959 . - . ID=Phyra87180;Parent=Phyra87180;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1640 . CDS 922 962 . - 0 ID=Phyra87180;Parent=Phyra87180;rank=2 scaffold_1640 . exon 922 962 . - . ID=Phyra87180.2;Parent=Phyra87180;constitutive=1;ensembl_phase=1;rank=2 scaffold_1640 . CDS 1966 3958 . - 0 ID=Phyra87180;Parent=Phyra87180;rank=1 scaffold_1640 . exon 1966 3959 . - . ID=Phyra87180.1;Parent=Phyra87180;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1638 1 4053 scaffold_1638 ensembl protein_coding_gene 77 4042 . - . ID=Phyra87178;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1638000001;logic_name=jgi_phyra1 scaffold_1638 ensembl transcript 77 4042 . - . ID=Phyra87178;Parent=Phyra87178;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1638 . CDS 77 909 . - 0 ID=Phyra87178;Parent=Phyra87178;rank=5 scaffold_1638 . exon 77 909 . - . ID=Phyra87178.5;Parent=Phyra87178;constitutive=1;ensembl_phase=1;rank=5 scaffold_1638 . CDS 976 1214 . - 0 ID=Phyra87178;Parent=Phyra87178;rank=4 scaffold_1638 . exon 976 1214 . - . ID=Phyra87178.4;Parent=Phyra87178;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_1638 . CDS 1651 2124 . - 0 ID=Phyra87178;Parent=Phyra87178;rank=3 scaffold_1638 . exon 1651 2124 . - . ID=Phyra87178.3;Parent=Phyra87178;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1638 . CDS 2166 2792 . - 0 ID=Phyra87178;Parent=Phyra87178;rank=2 scaffold_1638 . exon 2166 2792 . - . ID=Phyra87178.2;Parent=Phyra87178;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1638 . CDS 2856 4042 . - 0 ID=Phyra87178;Parent=Phyra87178;rank=1 scaffold_1638 . exon 2856 4042 . - . ID=Phyra87178.1;Parent=Phyra87178;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1865 1 4054 scaffold_1865 . repeat_region 1316 2525 . ? . description=dust scaffold_1865 . repeat_region 3655 3685 . ? . description=trf scaffold_1865 ensembl protein_coding_gene 1170 1307 . - . ID=Phyra43403;biotype=protein_coding;external_name=gwEuk.1865.1.1;logic_name=jgi_phyra1 scaffold_1865 ensembl transcript 1170 1307 . - . ID=Phyra43403;Parent=Phyra43403;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1865 . CDS 1170 1307 . - 0 ID=Phyra43403;Parent=Phyra43403;rank=1 scaffold_1865 . exon 1170 1307 . - . ID=Phyra43403.1;Parent=Phyra43403;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1663 1 4056 scaffold_1663 . repeat_region 151 163 . ? . description=dust scaffold_1663 . repeat_region 922 2049 . ? . description=dust scaffold_1663 . biological_region 2384 2388 0.999 + . logic_name=eponine scaffold_1663 . repeat_region 2809 2826 . ? . description=dust scaffold_1663 ensembl protein_coding_gene 2115 2681 . + . ID=Phyra87200;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1663000001;logic_name=jgi_phyra1 scaffold_1663 ensembl transcript 2115 2681 . + . ID=Phyra87200;Parent=Phyra87200;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1663 . CDS 2115 2681 . + 0 ID=Phyra87200;Parent=Phyra87200;rank=1 scaffold_1663 . exon 2115 2681 . + . ID=Phyra87200.1;Parent=Phyra87200;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1631 1 4060 scaffold_1631 . repeat_region 1722 2280 . ? . description=dust scaffold_1631 . biological_region 3943 3945 0.999 - . logic_name=eponine scaffold_1631 ensembl protein_coding_gene 3576 4037 . - . ID=Phyra87172;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1631000001;logic_name=jgi_phyra1 scaffold_1631 ensembl transcript 3576 4037 . - . ID=Phyra87172;Parent=Phyra87172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1631 . CDS 3576 4037 . - 0 ID=Phyra87172;Parent=Phyra87172;rank=1 scaffold_1631 . exon 3576 4037 . - . ID=Phyra87172.1;Parent=Phyra87172;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1636 1 4060 scaffold_1636 . repeat_region 5 1562 . + . description=GypsyPi-1c_I-int scaffold_1636 . repeat_region 2184 3265 . ? . description=dust scaffold_1636 . biological_region 3815 3820 0.999 - . logic_name=eponine scaffold_1636 . biological_region 3910 3910 0.999 + . logic_name=eponine scaffold_1636 . biological_region 4000 4003 0.999 - . logic_name=eponine scaffold_1636 ensembl protein_coding_gene 1143 1625 . - . ID=Phyra87177;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1636000001;logic_name=jgi_phyra1 scaffold_1636 ensembl transcript 1143 1625 . - . ID=Phyra87177;Parent=Phyra87177;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1636 . CDS 1143 1625 . - 0 ID=Phyra87177;Parent=Phyra87177;rank=1 scaffold_1636 . exon 1143 1625 . - . ID=Phyra87177.1;Parent=Phyra87177;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1637 1 4061 scaffold_1637 . repeat_region 1941 2596 . ? . description=dust scaffold_1637 ensembl protein_coding_gene 920 1180 . + . ID=Phyra42738;biotype=protein_coding;external_name=gwEuk.1637.3.1;logic_name=jgi_phyra1 scaffold_1637 ensembl transcript 920 1180 . + . ID=Phyra42738;Parent=Phyra42738;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1637 . CDS 920 1180 . + 0 ID=Phyra42738;Parent=Phyra42738;rank=1 scaffold_1637 . exon 920 1180 . + . ID=Phyra42738.1;Parent=Phyra42738;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1634 1 4062 scaffold_1634 . repeat_region 1240 1247 . ? . description=dust scaffold_1634 . biological_region 1393 1394 0.999 + . logic_name=eponine scaffold_1634 . repeat_region 1717 2074 . ? . description=dust scaffold_1634 . biological_region 4034 4038 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1635 1 4063 scaffold_1635 . repeat_region 999 2137 . ? . description=dust scaffold_1635 ensembl pseudogene 6 4063 . - . ID=Phyra42733;biotype=pseudogene;external_name=gwEuk.1635.5.1;logic_name=jgi_phyra1 scaffold_1635 ensembl pseudogene 6 4063 . - . ID=Phyra42733;Parent=Phyra42733;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1635 . exon 6 325 . - . ID=Phyra42733.4;Parent=Phyra42733;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1635 . exon 362 985 . - . ID=Phyra42733.3;Parent=Phyra42733;constitutive=1;rank=3 scaffold_1635 . exon 2306 3177 . - . ID=Phyra42733.2;Parent=Phyra42733;constitutive=1;ensembl_phase=1;rank=2 scaffold_1635 . exon 3235 4063 . - . ID=Phyra42733.1;Parent=Phyra42733;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1630 1 4064 scaffold_1630 . repeat_region 249 291 . ? . description=trf scaffold_1630 . repeat_region 390 436 . ? . description=trf scaffold_1630 . repeat_region 1201 1224 . ? . description=trf scaffold_1630 . repeat_region 1484 2843 . ? . description=dust scaffold_1630 . repeat_region 3631 3694 . ? . description=trf scaffold_1630 ensembl protein_coding_gene 2985 3314 . - . ID=Phyra42722;biotype=protein_coding;external_name=gwEuk.1630.8.1;logic_name=jgi_phyra1 scaffold_1630 ensembl transcript 2985 3314 . - . ID=Phyra42722;Parent=Phyra42722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1630 . CDS 2985 3314 . - 0 ID=Phyra42722;Parent=Phyra42722;rank=1 scaffold_1630 . exon 2985 3314 . - . ID=Phyra42722.1;Parent=Phyra42722;constitutive=1;rank=1 scaffold_1630 ensembl protein_coding_gene 482 1471 . - . ID=Phyra87170;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1630000001;logic_name=jgi_phyra1 scaffold_1630 ensembl transcript 482 1471 . - . ID=Phyra87170;Parent=Phyra87170;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1630 . CDS 482 1471 . - 0 ID=Phyra87170;Parent=Phyra87170;rank=1 scaffold_1630 . exon 482 1471 . - . ID=Phyra87170.1;Parent=Phyra87170;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1584 1 4066 scaffold_1584 ensembl pseudogene 2369 2631 . + . ID=Phyra42335;biotype=pseudogene;external_name=gwEuk.1584.2.1;logic_name=jgi_phyra1 scaffold_1584 ensembl pseudogene 2369 2631 . + . ID=Phyra42335;Parent=Phyra42335;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1584 . exon 2369 2631 . + . ID=Phyra42335.1;Parent=Phyra42335;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1628 1 4067 scaffold_1628 . biological_region 392 397 0.999 + . logic_name=eponine scaffold_1628 . biological_region 413 418 0.999 + . logic_name=eponine scaffold_1628 . biological_region 417 421 0.999 - . logic_name=eponine scaffold_1628 . repeat_region 844 2049 . ? . description=dust scaffold_1628 . repeat_region 2110 2196 . ? . description=trf scaffold_1628 . biological_region 3106 3109 0.999 - . logic_name=eponine scaffold_1628 . biological_region 3638 3640 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1623 1 4076 scaffold_1623 . repeat_region 94 138 . ? . description=trf scaffold_1623 . biological_region 435 439 0.999 - . logic_name=eponine scaffold_1623 . biological_region 788 790 0.999 + . logic_name=eponine scaffold_1623 . repeat_region 2093 2487 . ? . description=dust scaffold_1623 . repeat_region 2507 2524 . ? . description=dust scaffold_1623 . repeat_region 2584 2591 . ? . description=dust scaffold_1623 . biological_region 3147 3149 0.999 - . logic_name=eponine scaffold_1623 . biological_region 3498 3502 0.999 + . logic_name=eponine scaffold_1623 . biological_region 4064 4064 0.999 - . logic_name=eponine scaffold_1623 ensembl protein_coding_gene 36 683 . - . ID=Phyra87162;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1623000001;logic_name=jgi_phyra1 scaffold_1623 ensembl transcript 36 683 . - . ID=Phyra87162;Parent=Phyra87162;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1623 . CDS 36 683 . - 0 ID=Phyra87162;Parent=Phyra87162;rank=1 scaffold_1623 . exon 36 683 . - . ID=Phyra87162.1;Parent=Phyra87162;constitutive=1;rank=1 scaffold_1623 ensembl protein_coding_gene 3253 4073 . + . ID=Phyra87163;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1623000002;logic_name=jgi_phyra1 scaffold_1623 ensembl transcript 3253 4073 . + . ID=Phyra87163;Parent=Phyra87163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1623 . CDS 3253 4073 . + 0 ID=Phyra87163;Parent=Phyra87163;rank=1 scaffold_1623 . exon 3253 4073 . + . ID=Phyra87163.1;Parent=Phyra87163;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1694 1 4079 scaffold_1694 . repeat_region 675 682 . ? . description=dust scaffold_1694 . repeat_region 1487 1915 . ? . description=dust scaffold_1694 ensembl protein_coding_gene 2857 3681 . + . ID=Phyra87227;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1694000001;logic_name=jgi_phyra1 scaffold_1694 ensembl transcript 2857 3681 . + . ID=Phyra87227;Parent=Phyra87227;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1694 . CDS 2857 3681 . + 0 ID=Phyra87227;Parent=Phyra87227;rank=1 scaffold_1694 . exon 2857 3681 . + . ID=Phyra87227.1;Parent=Phyra87227;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1621 1 4082 scaffold_1621 . biological_region 1069 1073 0.999 + . logic_name=eponine scaffold_1621 . biological_region 1137 1140 0.999 - . logic_name=eponine scaffold_1621 . biological_region 1158 1158 0.999 + . logic_name=eponine scaffold_1621 . biological_region 1323 1330 0.999 + . logic_name=eponine scaffold_1621 . biological_region 1333 1335 0.999 - . logic_name=eponine scaffold_1621 . biological_region 1371 1373 0.999 + . logic_name=eponine scaffold_1621 . biological_region 1405 1407 0.999 - . logic_name=eponine scaffold_1621 . repeat_region 2105 2944 . ? . description=dust scaffold_1621 ensembl protein_coding_gene 13 1515 . - . ID=Phyra87159;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1621000001;logic_name=jgi_phyra1 scaffold_1621 ensembl transcript 13 1515 . - . ID=Phyra87159;Parent=Phyra87159;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1621 . CDS 13 1515 . - 0 ID=Phyra87159;Parent=Phyra87159;rank=1 scaffold_1621 . exon 13 1515 . - . ID=Phyra87159.1;Parent=Phyra87159;constitutive=1;rank=1 scaffold_1621 ensembl protein_coding_gene 1760 3117 . - . ID=Phyra87160;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1621000002;logic_name=jgi_phyra1 scaffold_1621 ensembl transcript 1760 3117 . - . ID=Phyra87160;Parent=Phyra87160;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1621 . CDS 1760 2054 . - 0 ID=Phyra87160;Parent=Phyra87160;rank=2 scaffold_1621 . exon 1760 2054 . - . ID=Phyra87160.2;Parent=Phyra87160;constitutive=1;ensembl_phase=2;rank=2 scaffold_1621 . CDS 2993 3117 . - 0 ID=Phyra87160;Parent=Phyra87160;rank=1 scaffold_1621 . exon 2993 3117 . - . ID=Phyra87160.1;Parent=Phyra87160;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1632 1 4086 scaffold_1632 . biological_region 102 102 0.999 + . logic_name=eponine scaffold_1632 . biological_region 1175 1180 0.999 + . logic_name=eponine scaffold_1632 . repeat_region 1289 1319 . ? . description=trf scaffold_1632 . repeat_region 1909 2948 . ? . description=dust scaffold_1632 . repeat_region 3569 3611 . ? . description=trf scaffold_1632 . repeat_region 3710 3756 . ? . description=trf scaffold_1632 ensembl protein_coding_gene 27 3429 . - . ID=Phyra87173;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1632000001;logic_name=jgi_phyra1 scaffold_1632 ensembl transcript 27 3429 . - . ID=Phyra87173;Parent=Phyra87173;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1632 . CDS 27 496 . - 0 ID=Phyra87173;Parent=Phyra87173;rank=3 scaffold_1632 . exon 27 496 . - . ID=Phyra87173.3;Parent=Phyra87173;constitutive=1;ensembl_phase=1;rank=3 scaffold_1632 . CDS 566 1877 . - 0 ID=Phyra87173;Parent=Phyra87173;rank=2 scaffold_1632 . exon 566 1877 . - . ID=Phyra87173.2;Parent=Phyra87173;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1632 . CDS 2965 3429 . - 0 ID=Phyra87173;Parent=Phyra87173;rank=1 scaffold_1632 . exon 2965 3429 . - . ID=Phyra87173.1;Parent=Phyra87173;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1620 1 4088 scaffold_1620 . repeat_region 1885 2752 . ? . description=dust scaffold_1620 ensembl protein_coding_gene 3201 3380 . - . ID=Phyra42674;biotype=protein_coding;external_name=gwEuk.1620.1.1;logic_name=jgi_phyra1 scaffold_1620 ensembl transcript 3201 3380 . - . ID=Phyra42674;Parent=Phyra42674;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1620 . CDS 3201 3380 . - 0 ID=Phyra42674;Parent=Phyra42674;rank=1 scaffold_1620 . exon 3201 3380 . - . ID=Phyra42674.1;Parent=Phyra42674;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1619 1 4092 scaffold_1619 . repeat_region 264 306 . ? . description=trf scaffold_1619 . biological_region 1453 1456 0.999 + . logic_name=eponine scaffold_1619 . repeat_region 1692 2288 . ? . description=dust scaffold_1619 . repeat_region 3488 3530 . ? . description=trf scaffold_1619 . repeat_region 3628 3674 . ? . description=trf scaffold_1619 ensembl pseudogene 2290 3365 . + . ID=Phyra42670;biotype=pseudogene;external_name=gwEuk.1619.6.1;logic_name=jgi_phyra1 scaffold_1619 ensembl pseudogene 2290 3365 . + . ID=Phyra42670;Parent=Phyra42670;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1619 . exon 2290 3365 . + . ID=Phyra42670.1;Parent=Phyra42670;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1674 1 4093 scaffold_1674 . biological_region 643 647 0.999 + . logic_name=eponine scaffold_1674 . biological_region 1093 1100 0.999 - . logic_name=eponine scaffold_1674 . biological_region 1138 1143 0.999 - . logic_name=eponine scaffold_1674 . repeat_region 1498 2874 . ? . description=dust scaffold_1674 . biological_region 3899 3899 0.999 - . logic_name=eponine scaffold_1674 . biological_region 3930 3932 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1616 1 4096 scaffold_1616 . biological_region 685 688 0.999 + . logic_name=eponine scaffold_1616 . biological_region 732 734 0.999 + . logic_name=eponine scaffold_1616 . repeat_region 757 781 . ? . description=trf scaffold_1616 . repeat_region 951 1731 . ? . description=dust scaffold_1616 . biological_region 2584 2584 0.999 + . logic_name=eponine scaffold_1616 . biological_region 2629 2633 0.999 + . logic_name=eponine scaffold_1616 . repeat_region 2645 2699 . + . description=(CGGA)n scaffold_1616 . repeat_region 2648 2697 . ? . description=dust scaffold_1616 . repeat_region 2655 2697 . ? . description=trf scaffold_1616 ensembl protein_coding_gene 2977 3918 . + . ID=Phyra42663;biotype=protein_coding;external_name=gwEuk.1616.6.1;logic_name=jgi_phyra1 scaffold_1616 ensembl transcript 2977 3918 . + . ID=Phyra42663;Parent=Phyra42663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1616 . CDS 2977 3918 . + 0 ID=Phyra42663;Parent=Phyra42663;rank=1 scaffold_1616 . exon 2977 3918 . + . ID=Phyra42663.1;Parent=Phyra42663;constitutive=1;rank=1 scaffold_1616 ensembl protein_coding_gene 47 361 . - . ID=Phyra87154;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1616000001;logic_name=jgi_phyra1 scaffold_1616 ensembl transcript 47 361 . - . ID=Phyra87154;Parent=Phyra87154;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1616 . CDS 47 361 . - 0 ID=Phyra87154;Parent=Phyra87154;rank=1 scaffold_1616 . exon 47 361 . - . ID=Phyra87154.1;Parent=Phyra87154;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1615 1 4099 scaffold_1615 . repeat_region 1449 2245 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1657 1 4101 scaffold_1657 . repeat_region 1444 2086 . ? . description=dust scaffold_1657 . repeat_region 2939 3016 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1463 1 4103 scaffold_1463 . biological_region 1691 1695 0.999 + . logic_name=eponine scaffold_1463 ensembl protein_coding_gene 1047 2701 . + . ID=Phyra87021;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1463000001;logic_name=jgi_phyra1 scaffold_1463 ensembl transcript 1047 2701 . + . ID=Phyra87021;Parent=Phyra87021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1463 . CDS 1047 1949 . + 0 ID=Phyra87021;Parent=Phyra87021;rank=1 scaffold_1463 . exon 1047 1949 . + . ID=Phyra87021.1;Parent=Phyra87021;constitutive=1;rank=1 scaffold_1463 . CDS 1991 2701 . + 0 ID=Phyra87021;Parent=Phyra87021;rank=2 scaffold_1463 . exon 1991 2701 . + . ID=Phyra87021.2;Parent=Phyra87021;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1625 1 4105 scaffold_1625 . repeat_region 428 470 . ? . description=trf scaffold_1625 . repeat_region 1308 2152 . ? . description=dust scaffold_1625 . repeat_region 2940 2961 . ? . description=trf scaffold_1625 . biological_region 3236 3239 0.999 - . logic_name=eponine scaffold_1625 ensembl protein_coding_gene 2 316 . + . ID=Phyra42691;biotype=protein_coding;external_name=gwEuk.1625.12.1;logic_name=jgi_phyra1 scaffold_1625 ensembl transcript 2 316 . + . ID=Phyra42691;Parent=Phyra42691;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1625 . CDS 2 316 . + 0 ID=Phyra42691;Parent=Phyra42691;rank=1 scaffold_1625 . exon 2 316 . + . ID=Phyra42691.1;Parent=Phyra42691;constitutive=1;rank=1 scaffold_1625 ensembl protein_coding_gene 755 1300 . - . ID=Phyra42692;biotype=protein_coding;external_name=gwEuk.1625.13.1;logic_name=jgi_phyra1 scaffold_1625 ensembl transcript 755 1300 . - . ID=Phyra42692;Parent=Phyra42692;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1625 . CDS 755 1300 . - 0 ID=Phyra42692;Parent=Phyra42692;rank=1 scaffold_1625 . exon 755 1300 . - . ID=Phyra42692.1;Parent=Phyra42692;constitutive=1;rank=1 scaffold_1625 ensembl protein_coding_gene 2169 4105 . - . ID=Phyra87167;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1625000002;logic_name=jgi_phyra1 scaffold_1625 ensembl transcript 2169 4105 . - . ID=Phyra87167;Parent=Phyra87167;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1625 . CDS 2169 2187 . - 0 ID=Phyra87167;Parent=Phyra87167;rank=3 scaffold_1625 . exon 2169 2187 . - . ID=Phyra87167.3;Parent=Phyra87167;constitutive=1;ensembl_phase=2;rank=3 scaffold_1625 . CDS 2219 3301 . - 0 ID=Phyra87167;Parent=Phyra87167;rank=2 scaffold_1625 . exon 2219 3301 . - . ID=Phyra87167.2;Parent=Phyra87167;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1625 . CDS 3519 4105 . - 0 ID=Phyra87167;Parent=Phyra87167;rank=1 scaffold_1625 . exon 3519 4105 . - . ID=Phyra87167.1;Parent=Phyra87167;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1565 1 4109 scaffold_1565 . repeat_region 713 761 . ? . description=dust scaffold_1565 . repeat_region 717 744 . ? . description=trf scaffold_1565 . biological_region 856 857 0.999 - . logic_name=eponine scaffold_1565 . biological_region 1552 1555 0.999 - . logic_name=eponine scaffold_1565 . biological_region 1711 1715 0.999 + . logic_name=eponine scaffold_1565 . repeat_region 2185 2234 . ? . description=dust scaffold_1565 . biological_region 2404 2405 0.999 + . logic_name=eponine scaffold_1565 . biological_region 2556 2560 0.999 - . logic_name=eponine scaffold_1565 . biological_region 2626 2632 0.999 - . logic_name=eponine scaffold_1565 ensembl protein_coding_gene 744 2856 . + . ID=Phyra87104;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1565000001;logic_name=jgi_phyra1 scaffold_1565 ensembl transcript 744 2856 . + . ID=Phyra87104;Parent=Phyra87104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1565 . CDS 744 1465 . + 0 ID=Phyra87104;Parent=Phyra87104;rank=1 scaffold_1565 . exon 744 1465 . + . ID=Phyra87104.1;Parent=Phyra87104;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1565 . CDS 1547 2121 . + 0 ID=Phyra87104;Parent=Phyra87104;rank=2 scaffold_1565 . exon 1547 2121 . + . ID=Phyra87104.2;Parent=Phyra87104;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1565 . CDS 2327 2580 . + 0 ID=Phyra87104;Parent=Phyra87104;rank=3 scaffold_1565 . exon 2327 2580 . + . ID=Phyra87104.3;Parent=Phyra87104;constitutive=1;ensembl_phase=1;rank=3 scaffold_1565 . CDS 2734 2856 . + 0 ID=Phyra87104;Parent=Phyra87104;rank=4 scaffold_1565 . exon 2734 2856 . + . ID=Phyra87104.4;Parent=Phyra87104;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_1613 1 4109 scaffold_1613 ensembl protein_coding_gene 1 1871 . + . ID=Phyra87151;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1613000001;logic_name=jgi_phyra1 scaffold_1613 ensembl transcript 1 1871 . + . ID=Phyra87151;Parent=Phyra87151;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1613 . exon 1 1169 . + . ID=Phyra87151.1;Parent=Phyra87151;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1613 . CDS 3 1169 . + 0 ID=Phyra87151;Parent=Phyra87151;rank=1 scaffold_1613 . CDS 1284 1871 . + 0 ID=Phyra87151;Parent=Phyra87151;rank=2 scaffold_1613 . exon 1284 1871 . + . ID=Phyra87151.2;Parent=Phyra87151;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1614 1 4109 scaffold_1614 . repeat_region 227 268 . ? . description=trf scaffold_1614 . repeat_region 2033 2698 . ? . description=dust scaffold_1614 ensembl pseudogene 500 1051 . + . ID=Phyra42655;biotype=pseudogene;external_name=gwEuk.1614.8.1;logic_name=jgi_phyra1 scaffold_1614 ensembl pseudogene 500 1051 . + . ID=Phyra42655;Parent=Phyra42655;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1614 . exon 500 1051 . + . ID=Phyra42655.1;Parent=Phyra42655;constitutive=1;rank=1 scaffold_1614 ensembl protein_coding_gene 1028 4071 . + . ID=Phyra87153;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1614000002;logic_name=jgi_phyra1 scaffold_1614 ensembl transcript 1028 4071 . + . ID=Phyra87153;Parent=Phyra87153;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1614 . CDS 1028 2003 . + 0 ID=Phyra87153;Parent=Phyra87153;rank=1 scaffold_1614 . exon 1028 2003 . + . ID=Phyra87153.1;Parent=Phyra87153;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1614 . CDS 2704 4071 . + 0 ID=Phyra87153;Parent=Phyra87153;rank=2 scaffold_1614 . exon 2704 4071 . + . ID=Phyra87153.2;Parent=Phyra87153;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1681 1 4110 scaffold_1681 . repeat_region 1142 1270 . ? . description=trf scaffold_1681 . repeat_region 1174 1363 . ? . description=trf scaffold_1681 . biological_region 1195 1200 0.999 + . logic_name=eponine scaffold_1681 . repeat_region 1576 2143 . ? . description=dust scaffold_1681 ensembl protein_coding_gene 1107 2353 . + . ID=Phyra87215;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1681000001;logic_name=jgi_phyra1 scaffold_1681 ensembl transcript 1107 2353 . + . ID=Phyra87215;Parent=Phyra87215;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1681 . CDS 1107 1565 . + 0 ID=Phyra87215;Parent=Phyra87215;rank=1 scaffold_1681 . exon 1107 1565 . + . ID=Phyra87215.1;Parent=Phyra87215;constitutive=1;rank=1 scaffold_1681 . CDS 2183 2353 . + 0 ID=Phyra87215;Parent=Phyra87215;rank=2 scaffold_1681 . exon 2183 2353 . + . ID=Phyra87215.2;Parent=Phyra87215;constitutive=1;rank=2 scaffold_1681 ensembl protein_coding_gene 2945 3890 . - . ID=Phyra87216;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1681000002;logic_name=jgi_phyra1 scaffold_1681 ensembl transcript 2945 3890 . - . ID=Phyra87216;Parent=Phyra87216;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1681 . CDS 2945 3194 . - 0 ID=Phyra87216;Parent=Phyra87216;rank=5 scaffold_1681 . exon 2945 3194 . - . ID=Phyra87216.5;Parent=Phyra87216;constitutive=1;ensembl_phase=2;rank=5 scaffold_1681 . CDS 3218 3281 . - 0 ID=Phyra87216;Parent=Phyra87216;rank=4 scaffold_1681 . exon 3218 3281 . - . ID=Phyra87216.4;Parent=Phyra87216;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_1681 . CDS 3531 3597 . - 0 ID=Phyra87216;Parent=Phyra87216;rank=3 scaffold_1681 . exon 3531 3597 . - . ID=Phyra87216.3;Parent=Phyra87216;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1681 . CDS 3708 3775 . - 0 ID=Phyra87216;Parent=Phyra87216;rank=2 scaffold_1681 . exon 3708 3775 . - . ID=Phyra87216.2;Parent=Phyra87216;constitutive=1;ensembl_phase=1;rank=2 scaffold_1681 . CDS 3857 3890 . - 0 ID=Phyra87216;Parent=Phyra87216;rank=1 scaffold_1681 . exon 3857 3890 . - . ID=Phyra87216.1;Parent=Phyra87216;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1633 1 4114 scaffold_1633 . repeat_region 1614 1878 . ? . description=dust scaffold_1633 . repeat_region 2748 2791 . ? . description=dust scaffold_1633 . repeat_region 2752 2779 . ? . description=trf scaffold_1633 . repeat_region 2859 2908 . ? . description=dust scaffold_1633 . biological_region 3090 3092 0.999 - . logic_name=eponine scaffold_1633 . biological_region 3530 3535 0.999 - . logic_name=eponine scaffold_1633 . biological_region 3690 3692 0.999 + . logic_name=eponine scaffold_1633 ensembl protein_coding_gene 119 1108 . + . ID=Phyra87174;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1633000001;logic_name=jgi_phyra1 scaffold_1633 ensembl transcript 119 1108 . + . ID=Phyra87174;Parent=Phyra87174;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1633 . CDS 119 1108 . + 0 ID=Phyra87174;Parent=Phyra87174;rank=1 scaffold_1633 . exon 119 1108 . + . ID=Phyra87174.1;Parent=Phyra87174;constitutive=1;rank=1 scaffold_1633 ensembl protein_coding_gene 2911 4091 . + . ID=Phyra87175;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1633000002;logic_name=jgi_phyra1 scaffold_1633 ensembl transcript 2911 4091 . + . ID=Phyra87175;Parent=Phyra87175;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1633 . CDS 2911 4091 . + 0 ID=Phyra87175;Parent=Phyra87175;rank=1 scaffold_1633 . exon 2911 4091 . + . ID=Phyra87175.1;Parent=Phyra87175;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1610 1 4117 scaffold_1610 . repeat_region 1774 2574 . ? . description=dust scaffold_1610 . repeat_region 2987 3287 . ? . description=trf scaffold_1610 . repeat_region 3804 4088 . ? . description=trf scaffold_1610 ensembl protein_coding_gene 56 709 . + . ID=Phyra87145;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1610000001;logic_name=jgi_phyra1 scaffold_1610 ensembl transcript 56 709 . + . ID=Phyra87145;Parent=Phyra87145;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1610 . CDS 56 709 . + 0 ID=Phyra87145;Parent=Phyra87145;rank=1 scaffold_1610 . exon 56 709 . + . ID=Phyra87145.1;Parent=Phyra87145;constitutive=1;rank=1 scaffold_1610 ensembl protein_coding_gene 1477 4101 . + . ID=Phyra87146;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1610000002;logic_name=jgi_phyra1 scaffold_1610 ensembl transcript 1477 4101 . + . ID=Phyra87146;Parent=Phyra87146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1610 . CDS 1477 1769 . + 0 ID=Phyra87146;Parent=Phyra87146;rank=1 scaffold_1610 . exon 1477 1769 . + . ID=Phyra87146.1;Parent=Phyra87146;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1610 . CDS 2616 4101 . + 0 ID=Phyra87146;Parent=Phyra87146;rank=2 scaffold_1610 . exon 2616 4101 . + . ID=Phyra87146.2;Parent=Phyra87146;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1611 1 4117 scaffold_1611 . repeat_region 1 376 . + . description=GypsyPi-1c_I-int scaffold_1611 . repeat_region 631 909 . + . description=GypsyPi-1c_I-int scaffold_1611 . repeat_region 1427 2744 . ? . description=dust scaffold_1611 . biological_region 3046 3047 0.999 - . logic_name=eponine scaffold_1611 . biological_region 3098 3102 0.999 - . logic_name=eponine scaffold_1611 . biological_region 3138 3139 0.999 + . logic_name=eponine scaffold_1611 . biological_region 3200 3205 0.999 - . logic_name=eponine scaffold_1611 . biological_region 3252 3256 0.999 - . logic_name=eponine scaffold_1611 . repeat_region 3632 3673 . ? . description=trf scaffold_1611 . repeat_region 3679 3712 . ? . description=trf scaffold_1611 . repeat_region 3741 3769 . ? . description=trf scaffold_1611 ensembl protein_coding_gene 1 255 . + . ID=Phyra42635;biotype=protein_coding;external_name=gwEuk.1611.4.1;logic_name=jgi_phyra1 scaffold_1611 ensembl transcript 1 255 . + . ID=Phyra42635;Parent=Phyra42635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1611 . CDS 1 255 . + 0 ID=Phyra42635;Parent=Phyra42635;rank=1 scaffold_1611 . exon 1 255 . + . ID=Phyra42635.1;Parent=Phyra42635;constitutive=1;rank=1 scaffold_1611 ensembl protein_coding_gene 3776 4111 . - . ID=Phyra87147;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1611000001;logic_name=jgi_phyra1 scaffold_1611 ensembl transcript 3776 4111 . - . ID=Phyra87147;Parent=Phyra87147;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1611 . CDS 3776 4111 . - 0 ID=Phyra87147;Parent=Phyra87147;rank=1 scaffold_1611 . exon 3776 4111 . - . ID=Phyra87147.1;Parent=Phyra87147;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1618 1 4119 scaffold_1618 . repeat_region 848 2274 . ? . description=dust scaffold_1618 . repeat_region 2426 2435 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1607 1 4123 scaffold_1607 . biological_region 940 943 0.999 + . logic_name=eponine scaffold_1607 . repeat_region 2019 2117 . + . description=GypsyPi-1c_I-int scaffold_1607 . repeat_region 2149 2869 . ? . description=dust scaffold_1607 . biological_region 2921 2923 0.999 + . logic_name=eponine scaffold_1607 . repeat_region 3401 4106 . + . description=GypsyPi-1c_I-int scaffold_1607 ensembl protein_coding_gene 3116 4081 . + . ID=Phyra87142;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1607000001;logic_name=jgi_phyra1 scaffold_1607 ensembl transcript 3116 4081 . + . ID=Phyra87142;Parent=Phyra87142;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1607 . CDS 3116 4081 . + 0 ID=Phyra87142;Parent=Phyra87142;rank=1 scaffold_1607 . exon 3116 4081 . + . ID=Phyra87142.1;Parent=Phyra87142;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1605 1 4128 scaffold_1605 . biological_region 110 113 0.999 + . logic_name=eponine scaffold_1605 . repeat_region 1137 2265 . ? . description=dust scaffold_1605 . repeat_region 3821 3861 . ? . description=trf scaffold_1605 ensembl protein_coding_gene 3652 4083 . - . ID=Phyra87140;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1605000001;logic_name=jgi_phyra1 scaffold_1605 ensembl transcript 3652 4083 . - . ID=Phyra87140;Parent=Phyra87140;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1605 . CDS 3652 3947 . - 0 ID=Phyra87140;Parent=Phyra87140;rank=2 scaffold_1605 . exon 3652 3947 . - . ID=Phyra87140.2;Parent=Phyra87140;constitutive=1;ensembl_phase=1;rank=2 scaffold_1605 . CDS 4015 4081 . - 0 ID=Phyra87140;Parent=Phyra87140;rank=1 scaffold_1605 . exon 4015 4083 . - . ID=Phyra87140.1;Parent=Phyra87140;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1604 1 4130 scaffold_1604 . repeat_region 321 333 . ? . description=dust scaffold_1604 . repeat_region 515 644 . ? . description=trf scaffold_1604 . repeat_region 605 676 . ? . description=trf scaffold_1604 . repeat_region 619 676 . ? . description=trf scaffold_1604 . repeat_region 1596 3066 . ? . description=dust scaffold_1604 . biological_region 3402 3406 0.999 - . logic_name=eponine scaffold_1604 ensembl protein_coding_gene 3309 3753 . - . ID=Phyra87139;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1604000001;logic_name=jgi_phyra1 scaffold_1604 ensembl transcript 3309 3753 . - . ID=Phyra87139;Parent=Phyra87139;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1604 . CDS 3309 3338 . - 0 ID=Phyra87139;Parent=Phyra87139;rank=2 scaffold_1604 . exon 3309 3338 . - . ID=Phyra87139.2;Parent=Phyra87139;constitutive=1;rank=2 scaffold_1604 . CDS 3364 3753 . - 0 ID=Phyra87139;Parent=Phyra87139;rank=1 scaffold_1604 . exon 3364 3753 . - . ID=Phyra87139.1;Parent=Phyra87139;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1606 1 4130 scaffold_1606 . repeat_region 331 338 . ? . description=dust scaffold_1606 . repeat_region 1709 1717 . ? . description=dust scaffold_1606 ensembl protein_coding_gene 1962 2663 . + . ID=Phyra87141;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1606000001;logic_name=jgi_phyra1 scaffold_1606 ensembl transcript 1962 2663 . + . ID=Phyra87141;Parent=Phyra87141;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1606 . CDS 1962 2663 . + 0 ID=Phyra87141;Parent=Phyra87141;rank=1 scaffold_1606 . exon 1962 2663 . + . ID=Phyra87141.1;Parent=Phyra87141;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1609 1 4132 scaffold_1609 . repeat_region 15 752 . + . description=GypsyPi-1c_I-int scaffold_1609 . repeat_region 995 1273 . + . description=GypsyPi-1c_I-int scaffold_1609 . repeat_region 1526 1539 . ? . description=dust scaffold_1609 . repeat_region 1819 2840 . ? . description=dust scaffold_1609 . repeat_region 3648 3718 . ? . description=trf scaffold_1609 ensembl protein_coding_gene 384 629 . + . ID=Phyra42606;biotype=protein_coding;external_name=gwEuk.1609.1.1;logic_name=jgi_phyra1 scaffold_1609 ensembl transcript 384 629 . + . ID=Phyra42606;Parent=Phyra42606;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1609 . CDS 384 629 . + 0 ID=Phyra42606;Parent=Phyra42606;rank=1 scaffold_1609 . exon 384 629 . + . ID=Phyra42606.1;Parent=Phyra42606;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1629 1 4140 scaffold_1629 . repeat_region 604 646 . ? . description=trf scaffold_1629 . repeat_region 745 791 . ? . description=trf scaffold_1629 . repeat_region 1593 1635 . ? . description=trf scaffold_1629 . repeat_region 1704 3097 . ? . description=dust scaffold_1629 . repeat_region 3679 3721 . ? . description=trf scaffold_1629 . repeat_region 3820 3866 . ? . description=trf scaffold_1629 ensembl pseudogene 149 478 . + . ID=Phyra42696;biotype=pseudogene;external_name=gwEuk.1629.3.1;logic_name=jgi_phyra1 scaffold_1629 ensembl pseudogene 149 478 . + . ID=Phyra42696;Parent=Phyra42696;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1629 . exon 149 478 . + . ID=Phyra42696.1;Parent=Phyra42696;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1599 1 4141 scaffold_1599 . biological_region 538 539 0.999 - . logic_name=eponine scaffold_1599 . repeat_region 1798 2774 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1647 1 4141 scaffold_1647 . repeat_region 1574 1623 . ? . description=dust scaffold_1647 . repeat_region 2973 3022 . ? . description=dust scaffold_1647 . repeat_region 3432 3474 . ? . description=trf scaffold_1647 ensembl protein_coding_gene 3766 4134 . + . ID=Phyra87189;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1647000001;logic_name=jgi_phyra1 scaffold_1647 ensembl transcript 3766 4134 . + . ID=Phyra87189;Parent=Phyra87189;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1647 . CDS 3766 4134 . + 0 ID=Phyra87189;Parent=Phyra87189;rank=1 scaffold_1647 . exon 3766 4134 . + . ID=Phyra87189.1;Parent=Phyra87189;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1597 1 4142 scaffold_1597 . repeat_region 1964 2619 . ? . description=dust scaffold_1597 . repeat_region 2765 2821 . ? . description=trf scaffold_1597 . repeat_region 2778 2821 . ? . description=trf scaffold_1597 . repeat_region 3642 3650 . ? . description=dust scaffold_1597 ensembl protein_coding_gene 102 1648 . - . ID=Phyra87134;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1597000001;logic_name=jgi_phyra1 scaffold_1597 ensembl transcript 102 1648 . - . ID=Phyra87134;Parent=Phyra87134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1597 . CDS 102 131 . - 0 ID=Phyra87134;Parent=Phyra87134;rank=2 scaffold_1597 . exon 102 131 . - . ID=Phyra87134.2;Parent=Phyra87134;constitutive=1;rank=2 scaffold_1597 . CDS 632 1648 . - 0 ID=Phyra87134;Parent=Phyra87134;rank=1 scaffold_1597 . exon 632 1648 . - . ID=Phyra87134.1;Parent=Phyra87134;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1598 1 4142 scaffold_1598 . biological_region 304 308 0.999 - . logic_name=eponine scaffold_1598 . biological_region 344 345 0.999 + . logic_name=eponine scaffold_1598 . biological_region 406 409 0.999 - . logic_name=eponine scaffold_1598 . biological_region 457 461 0.999 - . logic_name=eponine scaffold_1598 . repeat_region 978 2115 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1697 1 4143 scaffold_1697 . repeat_region 1110 1826 . ? . description=dust scaffold_1697 . repeat_region 4011 4032 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1787 1 4148 scaffold_1787 . repeat_region 1107 2657 . ? . description=dust scaffold_1787 . biological_region 3109 3113 0.999 + . logic_name=eponine scaffold_1787 . biological_region 3767 3770 0.999 + . logic_name=eponine scaffold_1787 . biological_region 3823 3827 0.999 + . logic_name=eponine scaffold_1787 . biological_region 4003 4003 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1595 1 4149 scaffold_1595 . repeat_region 1623 2361 . ? . description=dust scaffold_1595 ensembl protein_coding_gene 1050 4133 . + . ID=Phyra87132;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1595000001;logic_name=jgi_phyra1 scaffold_1595 ensembl transcript 1050 4133 . + . ID=Phyra87132;Parent=Phyra87132;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1595 . CDS 1050 1616 . + 0 ID=Phyra87132;Parent=Phyra87132;rank=1 scaffold_1595 . exon 1050 1616 . + . ID=Phyra87132.1;Parent=Phyra87132;constitutive=1;rank=1 scaffold_1595 . CDS 2423 4133 . + 0 ID=Phyra87132;Parent=Phyra87132;rank=2 scaffold_1595 . exon 2423 4133 . + . ID=Phyra87132.2;Parent=Phyra87132;constitutive=1;ensembl_end_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1593 1 4155 scaffold_1593 . biological_region 1251 1255 0.999 - . logic_name=eponine scaffold_1593 . repeat_region 1468 2813 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1591 1 4158 scaffold_1591 ensembl protein_coding_gene 57 944 . + . ID=Phyra87127;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1591000001;logic_name=jgi_phyra1 scaffold_1591 ensembl transcript 57 944 . + . ID=Phyra87127;Parent=Phyra87127;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1591 . CDS 57 944 . + 0 ID=Phyra87127;Parent=Phyra87127;rank=1 scaffold_1591 . exon 57 944 . + . ID=Phyra87127.1;Parent=Phyra87127;constitutive=1;rank=1 scaffold_1591 ensembl protein_coding_gene 3375 3964 . - . ID=Phyra87128;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1591000002;logic_name=jgi_phyra1 scaffold_1591 ensembl transcript 3375 3964 . - . ID=Phyra87128;Parent=Phyra87128;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1591 . CDS 3375 3797 . - 0 ID=Phyra87128;Parent=Phyra87128;rank=2 scaffold_1591 . exon 3375 3797 . - . ID=Phyra87128.2;Parent=Phyra87128;constitutive=1;rank=2 scaffold_1591 . CDS 3938 3964 . - 0 ID=Phyra87128;Parent=Phyra87128;rank=1 scaffold_1591 . exon 3938 3964 . - . ID=Phyra87128.1;Parent=Phyra87128;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1594 1 4159 scaffold_1594 . repeat_region 1293 1558 . ? . description=dust scaffold_1594 . repeat_region 1941 1976 . ? . description=trf scaffold_1594 . biological_region 2802 2803 0.999 + . logic_name=eponine scaffold_1594 ensembl protein_coding_gene 856 1287 . - . ID=Phyra87131;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1594000001;logic_name=jgi_phyra1 scaffold_1594 ensembl transcript 856 1287 . - . ID=Phyra87131;Parent=Phyra87131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1594 . CDS 856 1287 . - 0 ID=Phyra87131;Parent=Phyra87131;rank=1 scaffold_1594 . exon 856 1287 . - . ID=Phyra87131.1;Parent=Phyra87131;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1590 1 4165 scaffold_1590 . repeat_region 201 256 . ? . description=dust scaffold_1590 . repeat_region 544 587 . ? . description=trf scaffold_1590 . repeat_region 1173 2372 . ? . description=dust scaffold_1590 . biological_region 2511 2511 0.999 + . logic_name=eponine scaffold_1590 . biological_region 2546 2549 0.999 - . logic_name=eponine scaffold_1590 . repeat_region 3393 3456 . ? . description=dust scaffold_1590 ensembl protein_coding_gene 2415 3353 . + . ID=Phyra72491;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1590000001;logic_name=jgi_phyra1 scaffold_1590 ensembl transcript 2415 3353 . + . ID=Phyra72491;Parent=Phyra72491;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1590 . CDS 2415 3353 . + 0 ID=Phyra72491;Parent=Phyra72491;rank=1 scaffold_1590 . exon 2415 3353 . + . ID=Phyra72491.1;Parent=Phyra72491;constitutive=1;rank=1 scaffold_1590 ensembl protein_coding_gene 310 1151 . + . ID=Phyra87125;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1590000001;logic_name=jgi_phyra1 scaffold_1590 ensembl transcript 310 1151 . + . ID=Phyra87125;Parent=Phyra87125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1590 . CDS 310 1003 . + 0 ID=Phyra87125;Parent=Phyra87125;rank=1 scaffold_1590 . exon 310 1003 . + . ID=Phyra87125.1;Parent=Phyra87125;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1590 . CDS 1063 1151 . + 0 ID=Phyra87125;Parent=Phyra87125;rank=2 scaffold_1590 . exon 1063 1151 . + . ID=Phyra87125.2;Parent=Phyra87125;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1587 1 4169 scaffold_1587 . biological_region 226 230 0.999 + . logic_name=eponine scaffold_1587 . repeat_region 1266 1673 . ? . description=dust scaffold_1587 ensembl protein_coding_gene 2821 4018 . - . ID=Phyra87122;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1587000001;logic_name=jgi_phyra1 scaffold_1587 ensembl transcript 2821 4018 . - . ID=Phyra87122;Parent=Phyra87122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1587 . CDS 2821 2925 . - 0 ID=Phyra87122;Parent=Phyra87122;rank=3 scaffold_1587 . exon 2821 2925 . - . ID=Phyra87122.3;Parent=Phyra87122;constitutive=1;rank=3 scaffold_1587 . CDS 3032 3515 . - 0 ID=Phyra87122;Parent=Phyra87122;rank=2 scaffold_1587 . exon 3032 3515 . - . ID=Phyra87122.2;Parent=Phyra87122;constitutive=1;ensembl_phase=2;rank=2 scaffold_1587 . CDS 3702 4018 . - 0 ID=Phyra87122;Parent=Phyra87122;rank=1 scaffold_1587 . exon 3702 4018 . - . ID=Phyra87122.1;Parent=Phyra87122;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1585 1 4176 scaffold_1585 . repeat_region 791 808 . ? . description=dust scaffold_1585 . repeat_region 1813 2896 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1586 1 4177 scaffold_1586 . biological_region 168 169 0.999 + . logic_name=eponine scaffold_1586 . biological_region 219 223 0.999 - . logic_name=eponine scaffold_1586 . biological_region 279 279 0.999 - . logic_name=eponine scaffold_1586 . biological_region 311 317 0.999 - . logic_name=eponine scaffold_1586 . repeat_region 1275 3099 . ? . description=dust scaffold_1586 ensembl protein_coding_gene 3147 4118 . + . ID=Phyra87121;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1586000001;logic_name=jgi_phyra1 scaffold_1586 ensembl transcript 3147 4118 . + . ID=Phyra87121;Parent=Phyra87121;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1586 . CDS 3147 4118 . + 0 ID=Phyra87121;Parent=Phyra87121;rank=1 scaffold_1586 . exon 3147 4118 . + . ID=Phyra87121.1;Parent=Phyra87121;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1642 1 4177 scaffold_1642 . biological_region 307 310 0.999 - . logic_name=eponine scaffold_1642 ensembl protein_coding_gene 221 1184 . - . ID=Phyra87181;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1642000001;logic_name=jgi_phyra1 scaffold_1642 ensembl transcript 221 1184 . - . ID=Phyra87181;Parent=Phyra87181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1642 . CDS 221 582 . - 0 ID=Phyra87181;Parent=Phyra87181;rank=2 scaffold_1642 . exon 221 582 . - . ID=Phyra87181.2;Parent=Phyra87181;constitutive=1;ensembl_phase=1;rank=2 scaffold_1642 . CDS 638 1184 . - 0 ID=Phyra87181;Parent=Phyra87181;rank=1 scaffold_1642 . exon 638 1184 . - . ID=Phyra87181.1;Parent=Phyra87181;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1714 1 4178 scaffold_1714 . repeat_region 819 2774 . ? . description=dust scaffold_1714 . repeat_region 4025 4068 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1910 1 4182 scaffold_1910 . repeat_region 853 2806 . ? . description=dust scaffold_1910 . biological_region 4046 4047 0.999 + . logic_name=eponine scaffold_1910 ensembl protein_coding_gene 2951 4159 . + . ID=Phyra87383;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1910000001;logic_name=jgi_phyra1 scaffold_1910 ensembl transcript 2951 4159 . + . ID=Phyra87383;Parent=Phyra87383;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1910 . CDS 2951 4159 . + 0 ID=Phyra87383;Parent=Phyra87383;rank=1 scaffold_1910 . exon 2951 4159 . + . ID=Phyra87383.1;Parent=Phyra87383;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1580 1 4188 scaffold_1580 . repeat_region 1516 2565 . ? . description=dust scaffold_1580 . biological_region 2604 2605 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1600 1 4188 scaffold_1600 . repeat_region 1593 1642 . ? . description=dust scaffold_1600 ensembl protein_coding_gene 3812 4089 . + . ID=Phyra42597;biotype=protein_coding;external_name=gwEuk.1600.1.1;logic_name=jgi_phyra1 scaffold_1600 ensembl transcript 3812 4089 . + . ID=Phyra42597;Parent=Phyra42597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1600 . CDS 3812 3922 . + 0 ID=Phyra42597;Parent=Phyra42597;rank=1 scaffold_1600 . exon 3812 3922 . + . ID=Phyra42597.1;Parent=Phyra42597;constitutive=1;rank=1 scaffold_1600 . CDS 3991 4089 . + 0 ID=Phyra42597;Parent=Phyra42597;rank=2 scaffold_1600 . exon 3991 4089 . + . ID=Phyra42597.2;Parent=Phyra42597;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1581 1 4189 scaffold_1581 . repeat_region 896 918 . ? . description=trf scaffold_1581 . repeat_region 1168 1277 . ? . description=dust scaffold_1581 ensembl protein_coding_gene 1394 4081 . + . ID=Phyra87117;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1581000001;logic_name=jgi_phyra1 scaffold_1581 ensembl transcript 1394 4081 . + . ID=Phyra87117;Parent=Phyra87117;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1581 . CDS 1394 1551 . + 0 ID=Phyra87117;Parent=Phyra87117;rank=1 scaffold_1581 . exon 1394 1551 . + . ID=Phyra87117.1;Parent=Phyra87117;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1581 . CDS 1707 2084 . + 0 ID=Phyra87117;Parent=Phyra87117;rank=2 scaffold_1581 . exon 1707 2084 . + . ID=Phyra87117.2;Parent=Phyra87117;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1581 . CDS 2560 3152 . + 0 ID=Phyra87117;Parent=Phyra87117;rank=3 scaffold_1581 . exon 2560 3152 . + . ID=Phyra87117.3;Parent=Phyra87117;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1581 . CDS 3212 3436 . + 0 ID=Phyra87117;Parent=Phyra87117;rank=4 scaffold_1581 . exon 3212 3436 . + . ID=Phyra87117.4;Parent=Phyra87117;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1581 . CDS 3468 3516 . + 0 ID=Phyra87117;Parent=Phyra87117;rank=5 scaffold_1581 . exon 3468 3516 . + . ID=Phyra87117.5;Parent=Phyra87117;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_1581 . CDS 3537 4081 . + 0 ID=Phyra87117;Parent=Phyra87117;rank=6 scaffold_1581 . exon 3537 4081 . + . ID=Phyra87117.6;Parent=Phyra87117;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 ##gff-version 3 ##sequence-region scaffold_1582 1 4189 scaffold_1582 . repeat_region 892 2419 . ? . description=dust scaffold_1582 ensembl protein_coding_gene 3153 4178 . + . ID=Phyra87118;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1582000001;logic_name=jgi_phyra1 scaffold_1582 ensembl transcript 3153 4178 . + . ID=Phyra87118;Parent=Phyra87118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1582 . CDS 3153 4178 . + 0 ID=Phyra87118;Parent=Phyra87118;rank=1 scaffold_1582 . exon 3153 4178 . + . ID=Phyra87118.1;Parent=Phyra87118;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1403 1 4191 scaffold_1403 . repeat_region 2233 2365 . ? . description=trf scaffold_1403 . repeat_region 3221 3270 . ? . description=dust scaffold_1403 . repeat_region 3503 3541 . ? . description=trf scaffold_1403 . repeat_region 3579 3649 . ? . description=trf scaffold_1403 . repeat_region 3660 3695 . ? . description=trf scaffold_1403 . repeat_region 3723 3827 . ? . description=trf scaffold_1403 . repeat_region 3897 3952 . ? . description=trf scaffold_1403 . repeat_region 4007 4039 . ? . description=trf scaffold_1403 ensembl protein_coding_gene 3338 4180 . - . ID=Phyra72474;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1403000001;logic_name=jgi_phyra1 scaffold_1403 ensembl transcript 3338 4180 . - . ID=Phyra72474;Parent=Phyra72474;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1403 . CDS 3338 4180 . - 0 ID=Phyra72474;Parent=Phyra72474;rank=1 scaffold_1403 . exon 3338 4180 . - . ID=Phyra72474.1;Parent=Phyra72474;constitutive=1;rank=1 scaffold_1403 ensembl protein_coding_gene 980 2372 . + . ID=Phyra86952;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1403000001;logic_name=jgi_phyra1 scaffold_1403 ensembl transcript 980 2372 . + . ID=Phyra86952;Parent=Phyra86952;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1403 . CDS 980 1676 . + 0 ID=Phyra86952;Parent=Phyra86952;rank=1 scaffold_1403 . exon 980 1676 . + . ID=Phyra86952.1;Parent=Phyra86952;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1403 . CDS 1772 1825 . + 0 ID=Phyra86952;Parent=Phyra86952;rank=2 scaffold_1403 . exon 1772 1825 . + . ID=Phyra86952.2;Parent=Phyra86952;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1403 . CDS 2246 2287 . + 0 ID=Phyra86952;Parent=Phyra86952;rank=3 scaffold_1403 . exon 2246 2287 . + . ID=Phyra86952.3;Parent=Phyra86952;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1403 . CDS 2311 2372 . + 0 ID=Phyra86952;Parent=Phyra86952;rank=4 scaffold_1403 . exon 2311 2372 . + . ID=Phyra86952.4;Parent=Phyra86952;constitutive=1;ensembl_phase=1;rank=4 ##gff-version 3 ##sequence-region scaffold_1818 1 4191 scaffold_1818 . biological_region 1415 1415 0.999 + . logic_name=eponine scaffold_1818 . biological_region 1433 1438 0.999 + . logic_name=eponine scaffold_1818 . biological_region 1475 1480 0.999 - . logic_name=eponine scaffold_1818 . repeat_region 1668 2853 . ? . description=dust scaffold_1818 . repeat_region 2918 3095 . ? . description=trf scaffold_1818 . repeat_region 2927 3064 . ? . description=trf scaffold_1818 . repeat_region 2927 3095 . ? . description=trf scaffold_1818 . repeat_region 2948 3085 . ? . description=trf scaffold_1818 . repeat_region 3237 3244 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1579 1 4195 scaffold_1579 . repeat_region 430 439 . ? . description=dust scaffold_1579 . repeat_region 928 935 . ? . description=dust scaffold_1579 . repeat_region 2258 3026 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1596 1 4197 scaffold_1596 . repeat_region 857 906 . ? . description=dust scaffold_1596 . repeat_region 1849 2328 . ? . description=dust scaffold_1596 . biological_region 2574 2576 0.999 + . logic_name=eponine scaffold_1596 . biological_region 2607 2610 0.999 - . logic_name=eponine scaffold_1596 ensembl pseudogene 2930 3190 . + . ID=Phyra42352;biotype=pseudogene;external_name=gwEuk.1596.1.1;logic_name=jgi_phyra1 scaffold_1596 ensembl pseudogene 2930 3190 . + . ID=Phyra42352;Parent=Phyra42352;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1596 . exon 2930 3190 . + . ID=Phyra42352.1;Parent=Phyra42352;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1578 1 4200 scaffold_1578 . repeat_region 2043 3114 . ? . description=dust scaffold_1578 . repeat_region 4181 4190 . ? . description=dust scaffold_1578 ensembl protein_coding_gene 11 1340 . + . ID=Phyra87116;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1578000001;logic_name=jgi_phyra1 scaffold_1578 ensembl transcript 11 1340 . + . ID=Phyra87116;Parent=Phyra87116;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1578 . CDS 11 572 . + 0 ID=Phyra87116;Parent=Phyra87116;rank=1 scaffold_1578 . exon 11 572 . + . ID=Phyra87116.1;Parent=Phyra87116;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1578 . CDS 661 849 . + 0 ID=Phyra87116;Parent=Phyra87116;rank=2 scaffold_1578 . exon 661 849 . + . ID=Phyra87116.2;Parent=Phyra87116;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1578 . CDS 895 1059 . + 0 ID=Phyra87116;Parent=Phyra87116;rank=3 scaffold_1578 . exon 895 1059 . + . ID=Phyra87116.3;Parent=Phyra87116;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1578 . CDS 1141 1340 . + 0 ID=Phyra87116;Parent=Phyra87116;rank=4 scaffold_1578 . exon 1141 1340 . + . ID=Phyra87116.4;Parent=Phyra87116;constitutive=1;ensembl_phase=1;rank=4 ##gff-version 3 ##sequence-region scaffold_1769 1 4201 scaffold_1769 . repeat_region 1 598 . + . description=GypsyPi-1c_I-int scaffold_1769 . biological_region 1333 1335 0.999 + . logic_name=eponine scaffold_1769 . repeat_region 1546 2942 . ? . description=dust scaffold_1769 ensembl protein_coding_gene 315 792 . + . ID=Phyra87281;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1769000001;logic_name=jgi_phyra1 scaffold_1769 ensembl transcript 315 792 . + . ID=Phyra87281;Parent=Phyra87281;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1769 . CDS 315 366 . + 0 ID=Phyra87281;Parent=Phyra87281;rank=1 scaffold_1769 . exon 315 366 . + . ID=Phyra87281.1;Parent=Phyra87281;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1769 . CDS 436 596 . + 0 ID=Phyra87281;Parent=Phyra87281;rank=2 scaffold_1769 . exon 436 596 . + . ID=Phyra87281.2;Parent=Phyra87281;constitutive=1;ensembl_phase=1;rank=2 scaffold_1769 . CDS 700 792 . + 0 ID=Phyra87281;Parent=Phyra87281;rank=3 scaffold_1769 . exon 700 792 . + . ID=Phyra87281.3;Parent=Phyra87281;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1575 1 4202 scaffold_1575 . repeat_region 1845 3376 . ? . description=dust scaffold_1575 ensembl protein_coding_gene 372 878 . + . ID=Phyra87113;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1575000001;logic_name=jgi_phyra1 scaffold_1575 ensembl transcript 372 878 . + . ID=Phyra87113;Parent=Phyra87113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1575 . CDS 372 878 . + 0 ID=Phyra87113;Parent=Phyra87113;rank=1 scaffold_1575 . exon 372 878 . + . ID=Phyra87113.1;Parent=Phyra87113;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1576 1 4202 scaffold_1576 . repeat_region 602 629 . ? . description=trf scaffold_1576 . biological_region 2403 2403 0.999 + . logic_name=eponine scaffold_1576 . biological_region 3964 3970 0.999 - . logic_name=eponine scaffold_1576 . biological_region 4140 4143 0.999 - . logic_name=eponine scaffold_1576 ensembl protein_coding_gene 3490 4149 . + . ID=Phyra87114;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1576000001;logic_name=jgi_phyra1 scaffold_1576 ensembl transcript 3490 4149 . + . ID=Phyra87114;Parent=Phyra87114;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1576 . CDS 3490 4149 . + 0 ID=Phyra87114;Parent=Phyra87114;rank=1 scaffold_1576 . exon 3490 4149 . + . ID=Phyra87114.1;Parent=Phyra87114;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1574 1 4205 scaffold_1574 . repeat_region 515 1569 . + . description=GypsyPi-1c_I-int scaffold_1574 . biological_region 679 681 0.999 + . logic_name=eponine scaffold_1574 . repeat_region 1575 2475 . ? . description=dust scaffold_1574 . repeat_region 2479 2750 . + . description=GypsyPi-1c_I-int scaffold_1574 . repeat_region 3055 3333 . + . description=GypsyPi-1c_I-int scaffold_1574 . biological_region 3407 3409 0.999 - . logic_name=eponine scaffold_1574 ensembl protein_coding_gene 191 1349 . + . ID=Phyra87112;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1574000001;logic_name=jgi_phyra1 scaffold_1574 ensembl transcript 191 1349 . + . ID=Phyra87112;Parent=Phyra87112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1574 . CDS 191 1299 . + 0 ID=Phyra87112;Parent=Phyra87112;rank=1 scaffold_1574 . exon 191 1299 . + . ID=Phyra87112.1;Parent=Phyra87112;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1574 . CDS 1343 1349 . + 0 ID=Phyra87112;Parent=Phyra87112;rank=2 scaffold_1574 . exon 1343 1349 . + . ID=Phyra87112.2;Parent=Phyra87112;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1573 1 4209 scaffold_1573 . repeat_region 1390 1398 . ? . description=dust scaffold_1573 . repeat_region 1799 3314 . ? . description=dust scaffold_1573 ensembl protein_coding_gene 405 866 . - . ID=Phyra87111;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1573000001;logic_name=jgi_phyra1 scaffold_1573 ensembl transcript 405 866 . - . ID=Phyra87111;Parent=Phyra87111;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1573 . CDS 405 866 . - 0 ID=Phyra87111;Parent=Phyra87111;rank=1 scaffold_1573 . exon 405 866 . - . ID=Phyra87111.1;Parent=Phyra87111;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1572 1 4210 scaffold_1572 . repeat_region 1533 2968 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1465 1 4216 scaffold_1465 . repeat_region 3828 3857 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1589 1 4217 scaffold_1589 . repeat_region 577 639 . ? . description=dust scaffold_1589 . repeat_region 583 639 . ? . description=trf scaffold_1589 . repeat_region 927 983 . ? . description=trf scaffold_1589 . repeat_region 1759 2391 . ? . description=dust scaffold_1589 . repeat_region 3363 3412 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1608 1 4217 scaffold_1608 . repeat_region 330 347 . ? . description=dust scaffold_1608 . repeat_region 1516 2493 . ? . description=dust scaffold_1608 ensembl protein_coding_gene 972 1472 . - . ID=Phyra87143;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1608000001;logic_name=jgi_phyra1 scaffold_1608 ensembl transcript 972 1472 . - . ID=Phyra87143;Parent=Phyra87143;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1608 . CDS 972 1472 . - 0 ID=Phyra87143;Parent=Phyra87143;rank=1 scaffold_1608 . exon 972 1472 . - . ID=Phyra87143.1;Parent=Phyra87143;constitutive=1;rank=1 scaffold_1608 ensembl protein_coding_gene 3680 4168 . + . ID=Phyra87144;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1608000002;logic_name=jgi_phyra1 scaffold_1608 ensembl transcript 3680 4168 . + . ID=Phyra87144;Parent=Phyra87144;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1608 . CDS 3680 4168 . + 0 ID=Phyra87144;Parent=Phyra87144;rank=1 scaffold_1608 . exon 3680 4168 . + . ID=Phyra87144.1;Parent=Phyra87144;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1569 1 4224 scaffold_1569 . repeat_region 2026 2039 . ? . description=dust scaffold_1569 . repeat_region 2593 2639 . ? . description=trf scaffold_1569 ensembl protein_coding_gene 580 1626 . + . ID=Phyra72489;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1569000001;logic_name=jgi_phyra1 scaffold_1569 ensembl transcript 580 1626 . + . ID=Phyra72489;Parent=Phyra72489;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1569 . CDS 580 1626 . + 0 ID=Phyra72489;Parent=Phyra72489;rank=1 scaffold_1569 . exon 580 1626 . + . ID=Phyra72489.1;Parent=Phyra72489;constitutive=1;rank=1 scaffold_1569 ensembl protein_coding_gene 2991 4037 . + . ID=Phyra72490;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1569000002;logic_name=jgi_phyra1 scaffold_1569 ensembl transcript 2991 4037 . + . ID=Phyra72490;Parent=Phyra72490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1569 . CDS 2991 4037 . + 0 ID=Phyra72490;Parent=Phyra72490;rank=1 scaffold_1569 . exon 2991 4037 . + . ID=Phyra72490.1;Parent=Phyra72490;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1570 1 4225 scaffold_1570 . repeat_region 181 188 . ? . description=dust scaffold_1570 . biological_region 1037 1040 0.999 + . logic_name=eponine scaffold_1570 . biological_region 1102 1103 0.999 - . logic_name=eponine scaffold_1570 . biological_region 1138 1143 0.999 + . logic_name=eponine scaffold_1570 . repeat_region 1674 2077 . + . description=GypsyPi-1c_I-int scaffold_1570 . repeat_region 2078 3366 . ? . description=dust scaffold_1570 . repeat_region 3467 4170 . + . description=GypsyPi-1c_I-int scaffold_1570 ensembl protein_coding_gene 3845 4099 . + . ID=Phyra42288;biotype=protein_coding;external_name=gwEuk.1570.2.1;logic_name=jgi_phyra1 scaffold_1570 ensembl transcript 3845 4099 . + . ID=Phyra42288;Parent=Phyra42288;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1570 . CDS 3845 4099 . + 0 ID=Phyra42288;Parent=Phyra42288;rank=1 scaffold_1570 . exon 3845 4099 . + . ID=Phyra42288.1;Parent=Phyra42288;constitutive=1;rank=1 scaffold_1570 ensembl protein_coding_gene 15 1766 . + . ID=Phyra87109;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1570000001;logic_name=jgi_phyra1 scaffold_1570 ensembl transcript 15 1766 . + . ID=Phyra87109;Parent=Phyra87109;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1570 . CDS 15 71 . + 0 ID=Phyra87109;Parent=Phyra87109;rank=1 scaffold_1570 . exon 15 71 . + . ID=Phyra87109.1;Parent=Phyra87109;constitutive=1;rank=1 scaffold_1570 . CDS 195 338 . + 0 ID=Phyra87109;Parent=Phyra87109;rank=2 scaffold_1570 . exon 195 338 . + . ID=Phyra87109.2;Parent=Phyra87109;constitutive=1;rank=2 scaffold_1570 . CDS 414 1766 . + 0 ID=Phyra87109;Parent=Phyra87109;rank=3 scaffold_1570 . exon 414 1766 . + . ID=Phyra87109.3;Parent=Phyra87109;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1682 1 4226 scaffold_1682 . repeat_region 2019 2962 . ? . description=dust scaffold_1682 ensembl protein_coding_gene 70 1236 . - . ID=Phyra87217;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1682000001;logic_name=jgi_phyra1 scaffold_1682 ensembl transcript 70 1236 . - . ID=Phyra87217;Parent=Phyra87217;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1682 . CDS 70 952 . - 0 ID=Phyra87217;Parent=Phyra87217;rank=2 scaffold_1682 . exon 70 952 . - . ID=Phyra87217.2;Parent=Phyra87217;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1682 . CDS 1180 1236 . - 0 ID=Phyra87217;Parent=Phyra87217;rank=1 scaffold_1682 . exon 1180 1236 . - . ID=Phyra87217.1;Parent=Phyra87217;constitutive=1;rank=1 scaffold_1682 ensembl protein_coding_gene 3716 4141 . - . ID=Phyra87218;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1682000002;logic_name=jgi_phyra1 scaffold_1682 ensembl transcript 3716 4141 . - . ID=Phyra87218;Parent=Phyra87218;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1682 . CDS 3716 4141 . - 0 ID=Phyra87218;Parent=Phyra87218;rank=1 scaffold_1682 . exon 3716 4141 . - . ID=Phyra87218.1;Parent=Phyra87218;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1603 1 4230 scaffold_1603 . repeat_region 1919 1939 . ? . description=trf scaffold_1603 . repeat_region 1943 2993 . ? . description=dust scaffold_1603 ensembl protein_coding_gene 63 1225 . - . ID=Phyra87138;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1603000001;logic_name=jgi_phyra1 scaffold_1603 ensembl transcript 63 1225 . - . ID=Phyra87138;Parent=Phyra87138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1603 . CDS 63 1225 . - 0 ID=Phyra87138;Parent=Phyra87138;rank=1 scaffold_1603 . exon 63 1225 . - . ID=Phyra87138.1;Parent=Phyra87138;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1567 1 4232 scaffold_1567 . repeat_region 624 917 . + . description=GypsyPi-1c_LTR scaffold_1567 . repeat_region 918 2189 . + . description=GypsyPi-1c_I-int scaffold_1567 . biological_region 1855 1860 0.999 + . logic_name=eponine scaffold_1567 . repeat_region 2219 3166 . + . description=GypsyPi-1c_I-int scaffold_1567 . repeat_region 3429 3622 . + . description=GypsyPi-1c_I-int scaffold_1567 . repeat_region 3779 3851 . + . description=GypsyPi-1c_I-int scaffold_1567 . repeat_region 3979 4053 . + . description=GypsyPi-1c_I-int scaffold_1567 ensembl protein_coding_gene 1005 1970 . + . ID=Phyra87105;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1567000001;logic_name=jgi_phyra1 scaffold_1567 ensembl transcript 1005 1970 . + . ID=Phyra87105;Parent=Phyra87105;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1567 . CDS 1005 1970 . + 0 ID=Phyra87105;Parent=Phyra87105;rank=1 scaffold_1567 . exon 1005 1970 . + . ID=Phyra87105.1;Parent=Phyra87105;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1568 1 4233 scaffold_1568 . repeat_region 1088 1107 . ? . description=trf scaffold_1568 . repeat_region 1441 2782 . ? . description=dust scaffold_1568 ensembl protein_coding_gene 3133 4227 . - . ID=Phyra42269;biotype=protein_coding;external_name=gwEuk.1568.6.1;logic_name=jgi_phyra1 scaffold_1568 ensembl transcript 3133 4227 . - . ID=Phyra42269;Parent=Phyra42269;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1568 . CDS 3133 4227 . - 0 ID=Phyra42269;Parent=Phyra42269;rank=1 scaffold_1568 . exon 3133 4227 . - . ID=Phyra42269.1;Parent=Phyra42269;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1601 1 4234 scaffold_1601 . biological_region 142 144 0.999 + . logic_name=eponine scaffold_1601 . biological_region 496 497 0.999 + . logic_name=eponine scaffold_1601 . repeat_region 1469 2682 . ? . description=dust scaffold_1601 . repeat_region 3156 3198 . ? . description=trf scaffold_1601 . repeat_region 3297 3343 . ? . description=trf scaffold_1601 . repeat_region 3471 3490 . ? . description=trf scaffold_1601 . repeat_region 3796 3816 . ? . description=trf scaffold_1601 . repeat_region 4120 4149 . ? . description=trf scaffold_1601 ensembl protein_coding_gene 2722 3155 . + . ID=Phyra72492;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1601000001;logic_name=jgi_phyra1 scaffold_1601 ensembl transcript 2722 3155 . + . ID=Phyra72492;Parent=Phyra72492;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1601 . CDS 2722 3034 . + 0 ID=Phyra72492;Parent=Phyra72492;rank=1 scaffold_1601 . exon 2722 3034 . + . ID=Phyra72492.1;Parent=Phyra72492;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1601 . CDS 3106 3155 . + 0 ID=Phyra72492;Parent=Phyra72492;rank=2 scaffold_1601 . exon 3106 3155 . + . ID=Phyra72492.2;Parent=Phyra72492;constitutive=1;ensembl_phase=1;rank=2 scaffold_1601 ensembl protein_coding_gene 77 1463 . + . ID=Phyra87135;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1601000001;logic_name=jgi_phyra1 scaffold_1601 ensembl transcript 77 1463 . + . ID=Phyra87135;Parent=Phyra87135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1601 . CDS 77 901 . + 0 ID=Phyra87135;Parent=Phyra87135;rank=1 scaffold_1601 . exon 77 901 . + . ID=Phyra87135.1;Parent=Phyra87135;constitutive=1;rank=1 scaffold_1601 . CDS 922 1463 . + 0 ID=Phyra87135;Parent=Phyra87135;rank=2 scaffold_1601 . exon 922 1463 . + . ID=Phyra87135.2;Parent=Phyra87135;constitutive=1;ensembl_end_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1571 1 4235 scaffold_1571 . repeat_region 1672 2543 . ? . description=dust scaffold_1571 . biological_region 3198 3201 0.999 + . logic_name=eponine scaffold_1571 . biological_region 3232 3234 0.999 - . logic_name=eponine scaffold_1571 ensembl pseudogene 2617 2877 . - . ID=Phyra42289;biotype=pseudogene;external_name=gwEuk.1571.1.1;logic_name=jgi_phyra1 scaffold_1571 ensembl pseudogene 2617 2877 . - . ID=Phyra42289;Parent=Phyra42289;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1571 . exon 2617 2877 . - . ID=Phyra42289.1;Parent=Phyra42289;constitutive=1;rank=1 scaffold_1571 ensembl protein_coding_gene 2997 3745 . + . ID=Phyra87110;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1571000001;logic_name=jgi_phyra1 scaffold_1571 ensembl transcript 2997 3745 . + . ID=Phyra87110;Parent=Phyra87110;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1571 . CDS 2997 3264 . + 0 ID=Phyra87110;Parent=Phyra87110;rank=1 scaffold_1571 . exon 2997 3264 . + . ID=Phyra87110.1;Parent=Phyra87110;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1571 . CDS 3597 3745 . + 0 ID=Phyra87110;Parent=Phyra87110;rank=2 scaffold_1571 . exon 3597 3745 . + . ID=Phyra87110.2;Parent=Phyra87110;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1564 1 4246 scaffold_1564 . biological_region 834 835 0.999 + . logic_name=eponine scaffold_1564 . biological_region 849 850 0.999 + . logic_name=eponine scaffold_1564 . biological_region 1016 1020 0.999 - . logic_name=eponine scaffold_1564 . biological_region 1113 1113 0.999 + . logic_name=eponine scaffold_1564 . repeat_region 1140 1306 . ? . description=dust scaffold_1564 . biological_region 1884 1888 0.999 + . logic_name=eponine scaffold_1564 . biological_region 2218 2222 0.999 - . logic_name=eponine scaffold_1564 . repeat_region 3608 3627 . ? . description=trf scaffold_1564 . biological_region 3821 3823 0.999 - . logic_name=eponine scaffold_1564 . biological_region 3876 3877 0.999 + . logic_name=eponine scaffold_1564 . biological_region 3916 3918 0.999 + . logic_name=eponine scaffold_1564 . biological_region 4085 4086 0.999 - . logic_name=eponine scaffold_1564 . biological_region 4100 4101 0.999 - . logic_name=eponine scaffold_1564 ensembl protein_coding_gene 404 1087 . + . ID=Phyra87101;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1564000001;logic_name=jgi_phyra1 scaffold_1564 ensembl transcript 404 1087 . + . ID=Phyra87101;Parent=Phyra87101;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1564 . CDS 404 1087 . + 0 ID=Phyra87101;Parent=Phyra87101;rank=1 scaffold_1564 . exon 404 1087 . + . ID=Phyra87101.1;Parent=Phyra87101;constitutive=1;rank=1 scaffold_1564 ensembl protein_coding_gene 2116 2754 . + . ID=Phyra87102;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1564000002;logic_name=jgi_phyra1 scaffold_1564 ensembl transcript 2116 2754 . + . ID=Phyra87102;Parent=Phyra87102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1564 . CDS 2116 2754 . + 0 ID=Phyra87102;Parent=Phyra87102;rank=1 scaffold_1564 . exon 2116 2754 . + . ID=Phyra87102.1;Parent=Phyra87102;constitutive=1;rank=1 scaffold_1564 ensembl protein_coding_gene 3847 4245 . - . ID=Phyra87103;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1564000003;logic_name=jgi_phyra1 scaffold_1564 ensembl transcript 3847 4245 . - . ID=Phyra87103;Parent=Phyra87103;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1564 . CDS 3847 4245 . - 0 ID=Phyra87103;Parent=Phyra87103;rank=1 scaffold_1564 . exon 3847 4245 . - . ID=Phyra87103.1;Parent=Phyra87103;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1563 1 4247 scaffold_1563 . repeat_region 2209 3468 . ? . description=dust scaffold_1563 ensembl pseudogene 1087 1558 . - . ID=Phyra42263;biotype=pseudogene;external_name=gwEuk.1563.3.1;logic_name=jgi_phyra1 scaffold_1563 ensembl pseudogene 1087 1558 . - . ID=Phyra42263;Parent=Phyra42263;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1563 . exon 1087 1558 . - . ID=Phyra42263.1;Parent=Phyra42263;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1563 ensembl protein_coding_gene 256 1006 . + . ID=Phyra87100;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1563000001;logic_name=jgi_phyra1 scaffold_1563 ensembl transcript 256 1006 . + . ID=Phyra87100;Parent=Phyra87100;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1563 . CDS 256 373 . + 0 ID=Phyra87100;Parent=Phyra87100;rank=1 scaffold_1563 . exon 256 373 . + . ID=Phyra87100.1;Parent=Phyra87100;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1563 . CDS 423 1006 . + 0 ID=Phyra87100;Parent=Phyra87100;rank=2 scaffold_1563 . exon 423 1006 . + . ID=Phyra87100.2;Parent=Phyra87100;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1622 1 4248 scaffold_1622 . repeat_region 150 208 . ? . description=trf scaffold_1622 . repeat_region 866 1822 . ? . description=dust scaffold_1622 . repeat_region 2069 2100 . ? . description=trf scaffold_1622 . biological_region 3925 3929 0.999 - . logic_name=eponine scaffold_1622 ensembl protein_coding_gene 2078 2731 . - . ID=Phyra87161;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1622000001;logic_name=jgi_phyra1 scaffold_1622 ensembl transcript 2078 2731 . - . ID=Phyra87161;Parent=Phyra87161;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1622 . CDS 2078 2731 . - 0 ID=Phyra87161;Parent=Phyra87161;rank=1 scaffold_1622 . exon 2078 2731 . - . ID=Phyra87161.1;Parent=Phyra87161;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1480 1 4251 scaffold_1480 . repeat_region 160 247 . + . description=GypsyPi-1c_I-int scaffold_1480 . repeat_region 248 555 . + . description=GypsyPi-1c_LTR scaffold_1480 . repeat_region 2696 2704 . ? . description=dust scaffold_1480 ensembl protein_coding_gene 1743 2645 . + . ID=Phyra72483;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1480000001;logic_name=jgi_phyra1 scaffold_1480 ensembl transcript 1743 2645 . + . ID=Phyra72483;Parent=Phyra72483;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1480 . CDS 1743 2645 . + 0 ID=Phyra72483;Parent=Phyra72483;rank=1 scaffold_1480 . exon 1743 2645 . + . ID=Phyra72483.1;Parent=Phyra72483;constitutive=1;rank=1 scaffold_1480 ensembl protein_coding_gene 2995 4191 . - . ID=Phyra87035;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1480000002;logic_name=jgi_phyra1 scaffold_1480 ensembl transcript 2995 4191 . - . ID=Phyra87035;Parent=Phyra87035;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1480 . CDS 2995 4191 . - 0 ID=Phyra87035;Parent=Phyra87035;rank=1 scaffold_1480 . exon 2995 4191 . - . ID=Phyra87035.1;Parent=Phyra87035;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1562 1 4251 scaffold_1562 . biological_region 142 143 0.999 + . logic_name=eponine scaffold_1562 . biological_region 247 250 0.999 - . logic_name=eponine scaffold_1562 . biological_region 505 508 0.999 - . logic_name=eponine scaffold_1562 . repeat_region 2109 2458 . ? . description=dust scaffold_1562 . biological_region 2620 2621 0.999 + . logic_name=eponine scaffold_1562 . repeat_region 3308 3327 . ? . description=trf scaffold_1562 ensembl protein_coding_gene 14 2817 . - . ID=Phyra87099;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1562000001;logic_name=jgi_phyra1 scaffold_1562 ensembl transcript 14 2817 . - . ID=Phyra87099;Parent=Phyra87099;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1562 . CDS 14 672 . - 0 ID=Phyra87099;Parent=Phyra87099;rank=6 scaffold_1562 . exon 14 672 . - . ID=Phyra87099.6;Parent=Phyra87099;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_1562 . CDS 706 796 . - 0 ID=Phyra87099;Parent=Phyra87099;rank=5 scaffold_1562 . exon 706 796 . - . ID=Phyra87099.5;Parent=Phyra87099;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_1562 . CDS 1013 1120 . - 0 ID=Phyra87099;Parent=Phyra87099;rank=4 scaffold_1562 . exon 1013 1120 . - . ID=Phyra87099.4;Parent=Phyra87099;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1562 . CDS 1478 2028 . - 0 ID=Phyra87099;Parent=Phyra87099;rank=3 scaffold_1562 . exon 1478 2028 . - . ID=Phyra87099.3;Parent=Phyra87099;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1562 . CDS 2464 2524 . - 0 ID=Phyra87099;Parent=Phyra87099;rank=2 scaffold_1562 . exon 2464 2524 . - . ID=Phyra87099.2;Parent=Phyra87099;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1562 . CDS 2586 2817 . - 0 ID=Phyra87099;Parent=Phyra87099;rank=1 scaffold_1562 . exon 2586 2817 . - . ID=Phyra87099.1;Parent=Phyra87099;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1612 1 4258 scaffold_1612 . repeat_region 679 721 . ? . description=trf scaffold_1612 . repeat_region 820 866 . ? . description=trf scaffold_1612 . repeat_region 1691 2162 . ? . description=dust scaffold_1612 . repeat_region 3970 3998 . ? . description=trf scaffold_1612 . repeat_region 4027 4069 . ? . description=trf scaffold_1612 ensembl protein_coding_gene 8 553 . + . ID=Phyra42647;biotype=protein_coding;external_name=gwEuk.1612.9.1;logic_name=jgi_phyra1 scaffold_1612 ensembl transcript 8 553 . + . ID=Phyra42647;Parent=Phyra42647;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1612 . CDS 8 553 . + 0 ID=Phyra42647;Parent=Phyra42647;rank=1 scaffold_1612 . exon 8 553 . + . ID=Phyra42647.1;Parent=Phyra42647;constitutive=1;rank=1 scaffold_1612 ensembl protein_coding_gene 1083 2250 . + . ID=Phyra87149;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1612000002;logic_name=jgi_phyra1 scaffold_1612 ensembl transcript 1083 2250 . + . ID=Phyra87149;Parent=Phyra87149;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1612 . CDS 1083 1675 . + 0 ID=Phyra87149;Parent=Phyra87149;rank=1 scaffold_1612 . exon 1083 1675 . + . ID=Phyra87149.1;Parent=Phyra87149;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1612 . CDS 2205 2250 . + 0 ID=Phyra87149;Parent=Phyra87149;rank=2 scaffold_1612 . exon 2205 2250 . + . ID=Phyra87149.2;Parent=Phyra87149;constitutive=1;ensembl_phase=2;rank=2 scaffold_1612 ensembl protein_coding_gene 2455 3987 . - . ID=Phyra87150;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1612000003;logic_name=jgi_phyra1 scaffold_1612 ensembl transcript 2455 3987 . - . ID=Phyra87150;Parent=Phyra87150;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1612 . CDS 2455 2745 . - 0 ID=Phyra87150;Parent=Phyra87150;rank=3 scaffold_1612 . exon 2455 2745 . - . ID=Phyra87150.3;Parent=Phyra87150;constitutive=1;rank=3 scaffold_1612 . CDS 2770 3804 . - 0 ID=Phyra87150;Parent=Phyra87150;rank=2 scaffold_1612 . exon 2770 3804 . - . ID=Phyra87150.2;Parent=Phyra87150;constitutive=1;rank=2 scaffold_1612 . CDS 3985 3987 . - 0 ID=Phyra87150;Parent=Phyra87150;rank=1 scaffold_1612 . exon 3985 3987 . - . ID=Phyra87150.1;Parent=Phyra87150;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1560 1 4259 scaffold_1560 . biological_region 695 697 0.999 - . logic_name=eponine scaffold_1560 . repeat_region 1468 1500 . ? . description=trf scaffold_1560 . repeat_region 1536 1600 . ? . description=trf scaffold_1560 . repeat_region 1536 1647 . ? . description=trf scaffold_1560 . biological_region 1560 1563 0.999 + . logic_name=eponine scaffold_1560 . repeat_region 1563 1607 . ? . description=trf scaffold_1560 . repeat_region 1576 1645 . ? . description=trf scaffold_1560 . repeat_region 1591 1664 . ? . description=trf scaffold_1560 . repeat_region 1604 1737 . ? . description=trf scaffold_1560 . biological_region 1699 1704 0.999 - . logic_name=eponine scaffold_1560 . repeat_region 1975 3545 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1566 1 4261 scaffold_1566 . repeat_region 1013 1125 . ? . description=trf scaffold_1566 . repeat_region 2799 2807 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1671 1 4263 scaffold_1671 . biological_region 196 200 0.999 + . logic_name=eponine scaffold_1671 . biological_region 223 223 0.999 + . logic_name=eponine scaffold_1671 . repeat_region 311 341 . ? . description=trf scaffold_1671 . repeat_region 1312 2450 . ? . description=dust scaffold_1671 . repeat_region 3316 3357 . ? . description=trf scaffold_1671 ensembl protein_coding_gene 11 3026 . - . ID=Phyra87207;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1671000001;logic_name=jgi_phyra1 scaffold_1671 ensembl transcript 11 3026 . - . ID=Phyra87207;Parent=Phyra87207;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1671 . CDS 11 827 . - 0 ID=Phyra87207;Parent=Phyra87207;rank=3 scaffold_1671 . exon 11 827 . - . ID=Phyra87207.3;Parent=Phyra87207;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1671 . CDS 854 1261 . - 0 ID=Phyra87207;Parent=Phyra87207;rank=2 scaffold_1671 . exon 854 1261 . - . ID=Phyra87207.2;Parent=Phyra87207;constitutive=1;rank=2 scaffold_1671 . CDS 2478 3026 . - 0 ID=Phyra87207;Parent=Phyra87207;rank=1 scaffold_1671 . exon 2478 3026 . - . ID=Phyra87207.1;Parent=Phyra87207;constitutive=1;rank=1 scaffold_1671 ensembl protein_coding_gene 3451 4215 . - . ID=Phyra87208;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1671000002;logic_name=jgi_phyra1 scaffold_1671 ensembl transcript 3451 4215 . - . ID=Phyra87208;Parent=Phyra87208;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1671 . CDS 3451 3726 . - 0 ID=Phyra87208;Parent=Phyra87208;rank=2 scaffold_1671 . exon 3451 3726 . - . ID=Phyra87208.2;Parent=Phyra87208;constitutive=1;rank=2 scaffold_1671 . CDS 3844 4215 . - 0 ID=Phyra87208;Parent=Phyra87208;rank=1 scaffold_1671 . exon 3844 4215 . - . ID=Phyra87208.1;Parent=Phyra87208;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1559 1 4267 scaffold_1559 . biological_region 201 201 0.999 - . logic_name=eponine scaffold_1559 . repeat_region 1680 1781 . ? . description=trf scaffold_1559 . repeat_region 3279 3298 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1556 1 4273 scaffold_1556 . repeat_region 899 1675 . ? . description=dust scaffold_1556 . biological_region 2362 2365 0.999 - . logic_name=eponine scaffold_1556 . biological_region 2636 2637 0.999 + . logic_name=eponine scaffold_1556 . biological_region 3057 3059 0.999 + . logic_name=eponine scaffold_1556 . biological_region 3104 3106 0.999 - . logic_name=eponine scaffold_1556 . biological_region 3148 3149 0.999 - . logic_name=eponine scaffold_1556 . biological_region 3191 3196 0.999 - . logic_name=eponine scaffold_1556 . biological_region 3370 3371 0.999 + . logic_name=eponine scaffold_1556 . biological_region 3449 3451 0.999 + . logic_name=eponine scaffold_1556 ensembl protein_coding_gene 3354 3953 . + . ID=Phyra42227;biotype=protein_coding;external_name=gwEuk.1556.3.1;logic_name=jgi_phyra1 scaffold_1556 ensembl transcript 3354 3953 . + . ID=Phyra42227;Parent=Phyra42227;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1556 . CDS 3354 3953 . + 0 ID=Phyra42227;Parent=Phyra42227;rank=1 scaffold_1556 . exon 3354 3953 . + . ID=Phyra42227.1;Parent=Phyra42227;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1841 1 4273 scaffold_1841 . repeat_region 211 226 . ? . description=dust scaffold_1841 . biological_region 368 371 0.999 - . logic_name=eponine scaffold_1841 . repeat_region 912 1980 . ? . description=dust scaffold_1841 . repeat_region 3203 3251 . ? . description=trf scaffold_1841 . repeat_region 3297 3581 . ? . description=dust scaffold_1841 ensembl protein_coding_gene 499 2268 . + . ID=Phyra87338;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1841000001;logic_name=jgi_phyra1 scaffold_1841 ensembl transcript 499 2268 . + . ID=Phyra87338;Parent=Phyra87338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1841 . CDS 499 908 . + 0 ID=Phyra87338;Parent=Phyra87338;rank=1 scaffold_1841 . exon 499 908 . + . ID=Phyra87338.1;Parent=Phyra87338;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1841 . CDS 2072 2105 . + 0 ID=Phyra87338;Parent=Phyra87338;rank=2 scaffold_1841 . exon 2072 2105 . + . ID=Phyra87338.2;Parent=Phyra87338;constitutive=1;ensembl_phase=2;rank=2 scaffold_1841 . CDS 2251 2268 . + 0 ID=Phyra87338;Parent=Phyra87338;rank=3 scaffold_1841 . exon 2251 2268 . + . ID=Phyra87338.3;Parent=Phyra87338;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1551 1 4289 scaffold_1551 . biological_region 805 808 0.999 - . logic_name=eponine scaffold_1551 . biological_region 912 915 0.999 - . logic_name=eponine scaffold_1551 . biological_region 1075 1080 0.999 - . logic_name=eponine scaffold_1551 . biological_region 1114 1118 0.999 - . logic_name=eponine scaffold_1551 . repeat_region 1123 1180 . ? . description=trf scaffold_1551 . biological_region 1131 1135 0.999 + . logic_name=eponine scaffold_1551 . biological_region 1141 1142 0.999 - . logic_name=eponine scaffold_1551 . biological_region 1336 1342 0.999 + . logic_name=eponine scaffold_1551 . biological_region 1374 1381 0.999 + . logic_name=eponine scaffold_1551 . biological_region 1392 1395 0.999 - . logic_name=eponine scaffold_1551 . biological_region 1416 1422 0.999 - . logic_name=eponine scaffold_1551 . biological_region 1646 1652 0.999 - . logic_name=eponine scaffold_1551 . biological_region 1865 1866 0.999 - . logic_name=eponine scaffold_1551 . biological_region 2150 2156 0.999 - . logic_name=eponine scaffold_1551 . biological_region 2213 2217 0.999 + . logic_name=eponine scaffold_1551 . biological_region 2370 2373 0.999 - . logic_name=eponine scaffold_1551 . repeat_region 2721 2784 . ? . description=dust scaffold_1551 . biological_region 3152 3154 0.999 - . logic_name=eponine scaffold_1551 . biological_region 4036 4041 0.999 - . logic_name=eponine scaffold_1551 . biological_region 4092 4094 0.999 + . logic_name=eponine scaffold_1551 ensembl snRNA_gene 455 639 . + . ID=EPrPRAG00000000015;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_1551 ensembl snRNA 455 639 . + . ID=EPrPRAT00000000015;Parent=EPrPRAG00000000015;biotype=snRNA;logic_name=ncrna_eg scaffold_1551 . exon 455 639 . + . ID=EPrPRAE00000000015;Parent=EPrPRAT00000000015;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1551 ensembl protein_coding_gene 739 4284 . + . ID=Phyra87091;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1551000001;logic_name=jgi_phyra1 scaffold_1551 ensembl transcript 739 4284 . + . ID=Phyra87091;Parent=Phyra87091;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1551 . CDS 739 1868 . + 0 ID=Phyra87091;Parent=Phyra87091;rank=1 scaffold_1551 . exon 739 1868 . + . ID=Phyra87091.1;Parent=Phyra87091;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1551 . CDS 1978 2174 . + 0 ID=Phyra87091;Parent=Phyra87091;rank=2 scaffold_1551 . exon 1978 2174 . + . ID=Phyra87091.2;Parent=Phyra87091;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1551 . CDS 2309 2558 . + 0 ID=Phyra87091;Parent=Phyra87091;rank=3 scaffold_1551 . exon 2309 2558 . + . ID=Phyra87091.3;Parent=Phyra87091;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1551 . CDS 2587 4284 . + 0 ID=Phyra87091;Parent=Phyra87091;rank=4 scaffold_1551 . exon 2587 4284 . + . ID=Phyra87091.4;Parent=Phyra87091;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_1553 1 4290 scaffold_1553 . repeat_region 597 606 . ? . description=dust scaffold_1553 ensembl pseudogenic_tRNA 2452 2528 . - . ID=EPrPRAG00000000082;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_1553 ensembl transcript 2452 2528 . - . ID=EPrPRAT00000000082;Parent=EPrPRAG00000000082;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_1553 . exon 2452 2528 . - . ID=EPrPRAE00000000082;Parent=EPrPRAT00000000082;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1553 ensembl protein_coding_gene 1169 2329 . + . ID=Phyra87093;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1553000001;logic_name=jgi_phyra1 scaffold_1553 ensembl transcript 1169 2329 . + . ID=Phyra87093;Parent=Phyra87093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1553 . CDS 1169 2329 . + 0 ID=Phyra87093;Parent=Phyra87093;rank=1 scaffold_1553 . exon 1169 2329 . + . ID=Phyra87093.1;Parent=Phyra87093;constitutive=1;rank=1 scaffold_1553 ensembl protein_coding_gene 3010 4264 . + . ID=Phyra87094;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1553000002;logic_name=jgi_phyra1 scaffold_1553 ensembl transcript 3010 4264 . + . ID=Phyra87094;Parent=Phyra87094;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1553 . CDS 3010 3297 . + 0 ID=Phyra87094;Parent=Phyra87094;rank=1 scaffold_1553 . exon 3010 3297 . + . ID=Phyra87094.1;Parent=Phyra87094;constitutive=1;rank=1 scaffold_1553 . CDS 3368 4264 . + 0 ID=Phyra87094;Parent=Phyra87094;rank=2 scaffold_1553 . exon 3368 4264 . + . ID=Phyra87094.2;Parent=Phyra87094;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1583 1 4294 scaffold_1583 . repeat_region 14 447 . + . description=Gypsy-2-I_PI-int scaffold_1583 . biological_region 132 133 0.999 + . logic_name=eponine scaffold_1583 . repeat_region 803 858 . ? . description=dust scaffold_1583 . repeat_region 1110 1211 . + . description=Gypsy-1-LTR_PI scaffold_1583 . repeat_region 1591 1876 . ? . description=dust scaffold_1583 . repeat_region 2357 2386 . ? . description=trf scaffold_1583 . repeat_region 3350 3455 . ? . description=dust scaffold_1583 . repeat_region 3463 3490 . ? . description=trf scaffold_1583 . biological_region 3531 3536 0.999 + . logic_name=eponine scaffold_1583 . biological_region 3574 3580 0.999 - . logic_name=eponine scaffold_1583 . biological_region 3976 3977 0.999 - . logic_name=eponine scaffold_1583 ensembl protein_coding_gene 3738 4241 . - . ID=Phyra42333;biotype=protein_coding;external_name=gwEuk.1583.1.1;logic_name=jgi_phyra1 scaffold_1583 ensembl transcript 3738 4241 . - . ID=Phyra42333;Parent=Phyra42333;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1583 . CDS 3738 4241 . - 0 ID=Phyra42333;Parent=Phyra42333;rank=1 scaffold_1583 . exon 3738 4241 . - . ID=Phyra42333.1;Parent=Phyra42333;constitutive=1;rank=1 scaffold_1583 ensembl protein_coding_gene 36 879 . - . ID=Phyra87119;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1583000001;logic_name=jgi_phyra1 scaffold_1583 ensembl transcript 36 879 . - . ID=Phyra87119;Parent=Phyra87119;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1583 . CDS 36 879 . - 0 ID=Phyra87119;Parent=Phyra87119;rank=1 scaffold_1583 . exon 36 879 . - . ID=Phyra87119.1;Parent=Phyra87119;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1487 1 4296 scaffold_1487 . repeat_region 74 104 . ? . description=trf scaffold_1487 . repeat_region 1681 2738 . ? . description=dust scaffold_1487 . repeat_region 4105 4146 . ? . description=trf scaffold_1487 ensembl protein_coding_gene 14 1304 . - . ID=Phyra87042;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1487000001;logic_name=jgi_phyra1 scaffold_1487 ensembl transcript 14 1304 . - . ID=Phyra87042;Parent=Phyra87042;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1487 . CDS 14 1304 . - 0 ID=Phyra87042;Parent=Phyra87042;rank=1 scaffold_1487 . exon 14 1304 . - . ID=Phyra87042.1;Parent=Phyra87042;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1487 ensembl protein_coding_gene 2799 4077 . - . ID=Phyra87043;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1487000002;logic_name=jgi_phyra1 scaffold_1487 ensembl transcript 2799 4077 . - . ID=Phyra87043;Parent=Phyra87043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1487 . CDS 2799 3327 . - 0 ID=Phyra87043;Parent=Phyra87043;rank=3 scaffold_1487 . exon 2799 3327 . - . ID=Phyra87043.3;Parent=Phyra87043;constitutive=1;ensembl_phase=2;rank=3 scaffold_1487 . CDS 3417 3890 . - 0 ID=Phyra87043;Parent=Phyra87043;rank=2 scaffold_1487 . exon 3417 3890 . - . ID=Phyra87043.2;Parent=Phyra87043;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1487 . CDS 4043 4077 . - 0 ID=Phyra87043;Parent=Phyra87043;rank=1 scaffold_1487 . exon 4043 4077 . - . ID=Phyra87043.1;Parent=Phyra87043;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1741 1 4306 scaffold_1741 . biological_region 1275 1277 0.999 - . logic_name=eponine scaffold_1741 . repeat_region 1323 2874 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1627 1 4308 scaffold_1627 . repeat_region 691 2709 . ? . description=dust scaffold_1627 . biological_region 3926 3928 0.999 + . logic_name=eponine scaffold_1627 ensembl protein_coding_gene 3644 4057 . + . ID=Phyra87168;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1627000001;logic_name=jgi_phyra1 scaffold_1627 ensembl transcript 3644 4057 . + . ID=Phyra87168;Parent=Phyra87168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1627 . CDS 3644 4057 . + 0 ID=Phyra87168;Parent=Phyra87168;rank=1 scaffold_1627 . exon 3644 4057 . + . ID=Phyra87168.1;Parent=Phyra87168;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1547 1 4314 scaffold_1547 . repeat_region 1194 1864 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1489 1 4323 scaffold_1489 . repeat_region 1689 2159 . - . description=GypsyPi-1c_I-int scaffold_1489 . biological_region 2955 2958 0.999 + . logic_name=eponine scaffold_1489 . repeat_region 4034 4132 . + . description=GypsyPi-1c_I-int scaffold_1489 ensembl protein_coding_gene 102 332 . + . ID=Phyra41946;biotype=protein_coding;external_name=gwEuk.1489.2.1;logic_name=jgi_phyra1 scaffold_1489 ensembl transcript 102 332 . + . ID=Phyra41946;Parent=Phyra41946;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1489 . CDS 102 332 . + 0 ID=Phyra41946;Parent=Phyra41946;rank=1 scaffold_1489 . exon 102 332 . + . ID=Phyra41946.1;Parent=Phyra41946;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1538 1 4330 scaffold_1538 . repeat_region 18 32 . ? . description=dust scaffold_1538 . repeat_region 120 167 . ? . description=trf scaffold_1538 . biological_region 1981 1981 0.999 - . logic_name=eponine scaffold_1538 ensembl protein_coding_gene 1523 3838 . + . ID=Phyra87078;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1538000001;logic_name=jgi_phyra1 scaffold_1538 ensembl transcript 1523 3838 . + . ID=Phyra87078;Parent=Phyra87078;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1538 . CDS 1523 3838 . + 0 ID=Phyra87078;Parent=Phyra87078;rank=1 scaffold_1538 . exon 1523 3838 . + . ID=Phyra87078.1;Parent=Phyra87078;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1543 1 4331 scaffold_1543 . repeat_region 858 865 . ? . description=dust scaffold_1543 . repeat_region 2141 2705 . ? . description=dust scaffold_1543 . repeat_region 3662 3692 . ? . description=trf scaffold_1543 . repeat_region 3662 3719 . ? . description=trf scaffold_1543 . repeat_region 3665 3728 . ? . description=dust scaffold_1543 . repeat_region 3697 3728 . ? . description=trf scaffold_1543 ensembl protein_coding_gene 64 639 . - . ID=Phyra87081;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1543000001;logic_name=jgi_phyra1 scaffold_1543 ensembl transcript 64 639 . - . ID=Phyra87081;Parent=Phyra87081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1543 . CDS 64 639 . - 0 ID=Phyra87081;Parent=Phyra87081;rank=1 scaffold_1543 . exon 64 639 . - . ID=Phyra87081.1;Parent=Phyra87081;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1539 1 4335 scaffold_1539 . repeat_region 1000 1010 . ? . description=dust scaffold_1539 . repeat_region 1519 2460 . ? . description=dust scaffold_1539 . biological_region 3080 3080 0.999 - . logic_name=eponine scaffold_1539 ensembl protein_coding_gene 1316 3227 . + . ID=Phyra87079;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1539000001;logic_name=jgi_phyra1 scaffold_1539 ensembl transcript 1316 3227 . + . ID=Phyra87079;Parent=Phyra87079;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1539 . CDS 1316 1404 . + 0 ID=Phyra87079;Parent=Phyra87079;rank=1 scaffold_1539 . exon 1316 1404 . + . ID=Phyra87079.1;Parent=Phyra87079;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1539 . CDS 2510 3227 . + 0 ID=Phyra87079;Parent=Phyra87079;rank=2 scaffold_1539 . exon 2510 3227 . + . ID=Phyra87079.2;Parent=Phyra87079;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1541 1 4335 scaffold_1541 . repeat_region 5 75 . ? . description=trf scaffold_1541 . repeat_region 1897 3269 . ? . description=dust scaffold_1541 . repeat_region 3467 3485 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1540 1 4337 scaffold_1540 . repeat_region 1561 2618 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1537 1 4341 scaffold_1537 . biological_region 1638 1638 0.999 - . logic_name=eponine scaffold_1537 . repeat_region 1680 3025 . ? . description=dust scaffold_1537 ensembl protein_coding_gene 3248 3784 . + . ID=Phyra87076;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1537000001;logic_name=jgi_phyra1 scaffold_1537 ensembl transcript 3248 3784 . + . ID=Phyra87076;Parent=Phyra87076;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1537 . CDS 3248 3784 . + 0 ID=Phyra87076;Parent=Phyra87076;rank=1 scaffold_1537 . exon 3248 3784 . + . ID=Phyra87076.1;Parent=Phyra87076;constitutive=1;rank=1 scaffold_1537 ensembl protein_coding_gene 3912 4312 . - . ID=Phyra87077;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1537000002;logic_name=jgi_phyra1 scaffold_1537 ensembl transcript 3912 4312 . - . ID=Phyra87077;Parent=Phyra87077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1537 . CDS 3912 4310 . - 0 ID=Phyra87077;Parent=Phyra87077;rank=1 scaffold_1537 . exon 3912 4312 . - . ID=Phyra87077.1;Parent=Phyra87077;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1536 1 4345 scaffold_1536 . biological_region 129 130 0.999 - . logic_name=eponine scaffold_1536 . repeat_region 1569 2747 . ? . description=dust scaffold_1536 . biological_region 3225 3227 0.999 - . logic_name=eponine scaffold_1536 . biological_region 3859 3861 0.999 + . logic_name=eponine scaffold_1536 ensembl protein_coding_gene 2907 4289 . + . ID=Phyra87075;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1536000001;logic_name=jgi_phyra1 scaffold_1536 ensembl transcript 2907 4289 . + . ID=Phyra87075;Parent=Phyra87075;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1536 . CDS 2907 4289 . + 0 ID=Phyra87075;Parent=Phyra87075;rank=1 scaffold_1536 . exon 2907 4289 . + . ID=Phyra87075.1;Parent=Phyra87075;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1592 1 4346 scaffold_1592 . repeat_region 1943 2780 . ? . description=dust scaffold_1592 ensembl protein_coding_gene 15 563 . - . ID=Phyra87129;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1592000001;logic_name=jgi_phyra1 scaffold_1592 ensembl transcript 15 563 . - . ID=Phyra87129;Parent=Phyra87129;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1592 . CDS 15 218 . - 0 ID=Phyra87129;Parent=Phyra87129;rank=2 scaffold_1592 . exon 15 218 . - . ID=Phyra87129.2;Parent=Phyra87129;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1592 . CDS 418 563 . - 0 ID=Phyra87129;Parent=Phyra87129;rank=1 scaffold_1592 . exon 418 563 . - . ID=Phyra87129.1;Parent=Phyra87129;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1592 ensembl protein_coding_gene 2998 3923 . - . ID=Phyra87130;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1592000002;logic_name=jgi_phyra1 scaffold_1592 ensembl transcript 2998 3923 . - . ID=Phyra87130;Parent=Phyra87130;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1592 . CDS 2998 3048 . - 0 ID=Phyra87130;Parent=Phyra87130;rank=4 scaffold_1592 . exon 2998 3048 . - . ID=Phyra87130.4;Parent=Phyra87130;constitutive=1;rank=4 scaffold_1592 . CDS 3115 3153 . - 0 ID=Phyra87130;Parent=Phyra87130;rank=3 scaffold_1592 . exon 3115 3153 . - . ID=Phyra87130.3;Parent=Phyra87130;constitutive=1;rank=3 scaffold_1592 . CDS 3275 3580 . - 0 ID=Phyra87130;Parent=Phyra87130;rank=2 scaffold_1592 . exon 3275 3580 . - . ID=Phyra87130.2;Parent=Phyra87130;constitutive=1;rank=2 scaffold_1592 . CDS 3693 3923 . - 0 ID=Phyra87130;Parent=Phyra87130;rank=1 scaffold_1592 . exon 3693 3923 . - . ID=Phyra87130.1;Parent=Phyra87130;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1548 1 4350 scaffold_1548 . repeat_region 1989 3553 . ? . description=dust scaffold_1548 ensembl protein_coding_gene 226 918 . + . ID=Phyra87086;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1548000001;logic_name=jgi_phyra1 scaffold_1548 ensembl transcript 226 918 . + . ID=Phyra87086;Parent=Phyra87086;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1548 . CDS 226 918 . + 0 ID=Phyra87086;Parent=Phyra87086;rank=1 scaffold_1548 . exon 226 918 . + . ID=Phyra87086.1;Parent=Phyra87086;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1535 1 4352 scaffold_1535 . biological_region 396 399 0.999 + . logic_name=eponine scaffold_1535 . biological_region 399 404 0.999 - . logic_name=eponine scaffold_1535 . repeat_region 1813 1961 . ? . description=trf scaffold_1535 . repeat_region 2707 3209 . ? . description=dust scaffold_1535 . biological_region 3254 3263 0.999 + . logic_name=eponine scaffold_1535 ensembl protein_coding_gene 1945 2406 . - . ID=Phyra87074;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1535000001;logic_name=jgi_phyra1 scaffold_1535 ensembl transcript 1945 2406 . - . ID=Phyra87074;Parent=Phyra87074;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1535 . CDS 1945 2406 . - 0 ID=Phyra87074;Parent=Phyra87074;rank=1 scaffold_1535 . exon 1945 2406 . - . ID=Phyra87074.1;Parent=Phyra87074;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1552 1 4353 scaffold_1552 . repeat_region 1621 1628 . ? . description=dust scaffold_1552 . repeat_region 1767 3523 . ? . description=dust scaffold_1552 . repeat_region 3734 3742 . ? . description=dust scaffold_1552 ensembl protein_coding_gene 538 1248 . - . ID=Phyra87092;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1552000001;logic_name=jgi_phyra1 scaffold_1552 ensembl transcript 538 1248 . - . ID=Phyra87092;Parent=Phyra87092;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1552 . CDS 538 1248 . - 0 ID=Phyra87092;Parent=Phyra87092;rank=1 scaffold_1552 . exon 538 1248 . - . ID=Phyra87092.1;Parent=Phyra87092;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1545 1 4354 scaffold_1545 . repeat_region 1020 1054 . ? . description=trf scaffold_1545 . repeat_region 1163 1254 . + . description=(CTG)n scaffold_1545 . repeat_region 1185 1236 . ? . description=trf scaffold_1545 . repeat_region 1185 1236 . ? . description=dust scaffold_1545 . biological_region 2460 2460 0.999 - . logic_name=eponine scaffold_1545 ensembl protein_coding_gene 324 2611 . + . ID=Phyra87084;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1545000001;logic_name=jgi_phyra1 scaffold_1545 ensembl transcript 324 2611 . + . ID=Phyra87084;Parent=Phyra87084;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1545 . CDS 324 809 . + 0 ID=Phyra87084;Parent=Phyra87084;rank=1 scaffold_1545 . exon 324 809 . + . ID=Phyra87084.1;Parent=Phyra87084;constitutive=1;rank=1 scaffold_1545 . CDS 1124 1342 . + 0 ID=Phyra87084;Parent=Phyra87084;rank=2 scaffold_1545 . exon 1124 1342 . + . ID=Phyra87084.2;Parent=Phyra87084;constitutive=1;rank=2 scaffold_1545 . CDS 1428 1532 . + 0 ID=Phyra87084;Parent=Phyra87084;rank=3 scaffold_1545 . exon 1428 1532 . + . ID=Phyra87084.3;Parent=Phyra87084;constitutive=1;rank=3 scaffold_1545 . CDS 1574 1598 . + 0 ID=Phyra87084;Parent=Phyra87084;rank=4 scaffold_1545 . exon 1574 1598 . + . ID=Phyra87084.4;Parent=Phyra87084;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1545 . CDS 1658 1703 . + 0 ID=Phyra87084;Parent=Phyra87084;rank=5 scaffold_1545 . exon 1658 1703 . + . ID=Phyra87084.5;Parent=Phyra87084;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_1545 . CDS 1764 1860 . + 0 ID=Phyra87084;Parent=Phyra87084;rank=6 scaffold_1545 . exon 1764 1860 . + . ID=Phyra87084.6;Parent=Phyra87084;constitutive=1;ensembl_phase=2;rank=6 scaffold_1545 . CDS 1925 1991 . + 0 ID=Phyra87084;Parent=Phyra87084;rank=7 scaffold_1545 . exon 1925 1991 . + . ID=Phyra87084.7;Parent=Phyra87084;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_1545 . CDS 2067 2168 . + 0 ID=Phyra87084;Parent=Phyra87084;rank=8 scaffold_1545 . exon 2067 2168 . + . ID=Phyra87084.8;Parent=Phyra87084;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_1545 . CDS 2343 2611 . + 0 ID=Phyra87084;Parent=Phyra87084;rank=9 scaffold_1545 . exon 2343 2611 . + . ID=Phyra87084.9;Parent=Phyra87084;constitutive=1;ensembl_phase=1;rank=9 scaffold_1545 ensembl protein_coding_gene 3328 4332 . - . ID=Phyra87085;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1545000002;logic_name=jgi_phyra1 scaffold_1545 ensembl transcript 3328 4332 . - . ID=Phyra87085;Parent=Phyra87085;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1545 . CDS 3328 4332 . - 0 ID=Phyra87085;Parent=Phyra87085;rank=1 scaffold_1545 . exon 3328 4332 . - . ID=Phyra87085.1;Parent=Phyra87085;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1534 1 4355 scaffold_1534 ensembl protein_coding_gene 149 1156 . + . ID=Phyra87072;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1534000001;logic_name=jgi_phyra1 scaffold_1534 ensembl transcript 149 1156 . + . ID=Phyra87072;Parent=Phyra87072;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1534 . exon 149 721 . + . ID=Phyra87072.1;Parent=Phyra87072;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1534 . CDS 151 721 . + 0 ID=Phyra87072;Parent=Phyra87072;rank=1 scaffold_1534 . CDS 876 1156 . + 0 ID=Phyra87072;Parent=Phyra87072;rank=2 scaffold_1534 . exon 876 1156 . + . ID=Phyra87072.2;Parent=Phyra87072;constitutive=1;ensembl_phase=1;rank=2 scaffold_1534 ensembl protein_coding_gene 1584 3361 . - . ID=Phyra87073;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1534000002;logic_name=jgi_phyra1 scaffold_1534 ensembl transcript 1584 3361 . - . ID=Phyra87073;Parent=Phyra87073;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1534 . CDS 1584 1613 . - 0 ID=Phyra87073;Parent=Phyra87073;rank=4 scaffold_1534 . exon 1584 1613 . - . ID=Phyra87073.4;Parent=Phyra87073;constitutive=1;rank=4 scaffold_1534 . CDS 1753 2586 . - 0 ID=Phyra87073;Parent=Phyra87073;rank=3 scaffold_1534 . exon 1753 2586 . - . ID=Phyra87073.3;Parent=Phyra87073;constitutive=1;rank=3 scaffold_1534 . CDS 2654 2764 . - 0 ID=Phyra87073;Parent=Phyra87073;rank=2 scaffold_1534 . exon 2654 2764 . - . ID=Phyra87073.2;Parent=Phyra87073;constitutive=1;rank=2 scaffold_1534 . CDS 2864 3361 . - 0 ID=Phyra87073;Parent=Phyra87073;rank=1 scaffold_1534 . exon 2864 3361 . - . ID=Phyra87073.1;Parent=Phyra87073;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1533 1 4363 scaffold_1533 . repeat_region 1322 3531 . ? . description=dust scaffold_1533 . biological_region 4279 4283 0.999 + . logic_name=eponine scaffold_1533 . repeat_region 4287 4328 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1532 1 4372 scaffold_1532 . repeat_region 1933 2047 . ? . description=dust scaffold_1532 . biological_region 2308 2311 0.999 + . logic_name=eponine scaffold_1532 . repeat_region 2644 2828 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1529 1 4381 scaffold_1529 . repeat_region 336 609 . + . description=GypsyPi-1c_I-int scaffold_1529 . biological_region 725 726 0.999 - . logic_name=eponine scaffold_1529 . repeat_region 858 878 . ? . description=dust scaffold_1529 . repeat_region 1418 2868 . ? . description=dust scaffold_1529 . repeat_region 3662 3731 . ? . description=trf scaffold_1529 . repeat_region 3665 3732 . ? . description=trf scaffold_1529 ensembl protein_coding_gene 3178 4092 . - . ID=Phyra87067;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1529000001;logic_name=jgi_phyra1 scaffold_1529 ensembl transcript 3178 4092 . - . ID=Phyra87067;Parent=Phyra87067;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1529 . CDS 3178 3377 . - 0 ID=Phyra87067;Parent=Phyra87067;rank=4 scaffold_1529 . exon 3178 3377 . - . ID=Phyra87067.4;Parent=Phyra87067;constitutive=1;ensembl_phase=1;rank=4 scaffold_1529 . CDS 3431 3619 . - 0 ID=Phyra87067;Parent=Phyra87067;rank=3 scaffold_1529 . exon 3431 3619 . - . ID=Phyra87067.3;Parent=Phyra87067;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1529 . CDS 3757 3953 . - 0 ID=Phyra87067;Parent=Phyra87067;rank=2 scaffold_1529 . exon 3757 3953 . - . ID=Phyra87067.2;Parent=Phyra87067;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1529 . CDS 3974 4092 . - 0 ID=Phyra87067;Parent=Phyra87067;rank=1 scaffold_1529 . exon 3974 4092 . - . ID=Phyra87067.1;Parent=Phyra87067;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1550 1 4381 scaffold_1550 . repeat_region 565 578 . ? . description=dust scaffold_1550 . repeat_region 1943 2627 . ? . description=dust scaffold_1550 ensembl protein_coding_gene 15 461 . - . ID=Phyra87089;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1550000001;logic_name=jgi_phyra1 scaffold_1550 ensembl transcript 15 461 . - . ID=Phyra87089;Parent=Phyra87089;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1550 . CDS 15 356 . - 0 ID=Phyra87089;Parent=Phyra87089;rank=2 scaffold_1550 . exon 15 356 . - . ID=Phyra87089.2;Parent=Phyra87089;constitutive=1;rank=2 scaffold_1550 . CDS 402 461 . - 0 ID=Phyra87089;Parent=Phyra87089;rank=1 scaffold_1550 . exon 402 461 . - . ID=Phyra87089.1;Parent=Phyra87089;constitutive=1;rank=1 scaffold_1550 ensembl protein_coding_gene 936 4346 . - . ID=Phyra87090;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1550000002;logic_name=jgi_phyra1 scaffold_1550 ensembl transcript 936 4346 . - . ID=Phyra87090;Parent=Phyra87090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1550 . CDS 936 1402 . - 0 ID=Phyra87090;Parent=Phyra87090;rank=5 scaffold_1550 . exon 936 1402 . - . ID=Phyra87090.5;Parent=Phyra87090;constitutive=1;ensembl_phase=1;rank=5 scaffold_1550 . CDS 1482 1530 . - 0 ID=Phyra87090;Parent=Phyra87090;rank=4 scaffold_1550 . exon 1482 1530 . - . ID=Phyra87090.4;Parent=Phyra87090;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1550 . CDS 1616 1660 . - 0 ID=Phyra87090;Parent=Phyra87090;rank=3 scaffold_1550 . exon 1616 1660 . - . ID=Phyra87090.3;Parent=Phyra87090;constitutive=1;rank=3 scaffold_1550 . CDS 1741 1863 . - 0 ID=Phyra87090;Parent=Phyra87090;rank=2 scaffold_1550 . exon 1741 1863 . - . ID=Phyra87090.2;Parent=Phyra87090;constitutive=1;rank=2 scaffold_1550 . CDS 2655 4346 . - 0 ID=Phyra87090;Parent=Phyra87090;rank=1 scaffold_1550 . exon 2655 4346 . - . ID=Phyra87090.1;Parent=Phyra87090;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1528 1 4382 scaffold_1528 . repeat_region 1321 1376 . ? . description=dust scaffold_1528 . repeat_region 2242 3494 . ? . description=dust scaffold_1528 . biological_region 3648 3651 0.999 + . logic_name=eponine scaffold_1528 . biological_region 3699 3702 0.999 + . logic_name=eponine scaffold_1528 . biological_region 3765 3765 0.999 - . logic_name=eponine scaffold_1528 . biological_region 3801 3805 0.999 + . logic_name=eponine scaffold_1528 . repeat_region 4329 4382 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1549 1 4382 scaffold_1549 . biological_region 431 434 0.999 - . logic_name=eponine scaffold_1549 . repeat_region 1134 1144 . ? . description=dust scaffold_1549 . repeat_region 1367 1436 . ? . description=trf scaffold_1549 . repeat_region 1424 1465 . ? . description=trf scaffold_1549 . repeat_region 1466 1504 . ? . description=dust scaffold_1549 . repeat_region 1638 2803 . ? . description=dust scaffold_1549 . repeat_region 3328 3482 . ? . description=trf scaffold_1549 . repeat_region 3367 3485 . ? . description=trf scaffold_1549 . biological_region 3386 3393 0.999 + . logic_name=eponine scaffold_1549 . biological_region 3461 3462 0.999 - . logic_name=eponine scaffold_1549 . repeat_region 3633 3664 . ? . description=trf scaffold_1549 . biological_region 3762 3765 0.999 - . logic_name=eponine scaffold_1549 ensembl protein_coding_gene 318 716 . + . ID=Phyra87087;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1549000001;logic_name=jgi_phyra1 scaffold_1549 ensembl transcript 318 716 . + . ID=Phyra87087;Parent=Phyra87087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1549 . CDS 318 716 . + 0 ID=Phyra87087;Parent=Phyra87087;rank=1 scaffold_1549 . exon 318 716 . + . ID=Phyra87087.1;Parent=Phyra87087;constitutive=1;rank=1 scaffold_1549 ensembl protein_coding_gene 1567 3626 . - . ID=Phyra87088;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1549000002;logic_name=jgi_phyra1 scaffold_1549 ensembl transcript 1567 3626 . - . ID=Phyra87088;Parent=Phyra87088;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1549 . CDS 1567 1580 . - 0 ID=Phyra87088;Parent=Phyra87088;rank=2 scaffold_1549 . exon 1567 1580 . - . ID=Phyra87088.2;Parent=Phyra87088;constitutive=1;ensembl_phase=1;rank=2 scaffold_1549 . CDS 2813 3626 . - 0 ID=Phyra87088;Parent=Phyra87088;rank=1 scaffold_1549 . exon 2813 3626 . - . ID=Phyra87088.1;Parent=Phyra87088;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1527 1 4383 scaffold_1527 . biological_region 1251 1254 0.999 + . logic_name=eponine scaffold_1527 . repeat_region 1373 2995 . ? . description=dust scaffold_1527 . repeat_region 3897 3943 . ? . description=trf scaffold_1527 ensembl protein_coding_gene 3247 3522 . + . ID=Phyra42184;biotype=protein_coding;external_name=gwEuk.1527.1.1;logic_name=jgi_phyra1 scaffold_1527 ensembl transcript 3247 3522 . + . ID=Phyra42184;Parent=Phyra42184;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1527 . CDS 3247 3522 . + 0 ID=Phyra42184;Parent=Phyra42184;rank=1 scaffold_1527 . exon 3247 3522 . + . ID=Phyra42184.1;Parent=Phyra42184;constitutive=1;rank=1 scaffold_1527 ensembl protein_coding_gene 25 1173 . - . ID=Phyra87066;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1527000001;logic_name=jgi_phyra1 scaffold_1527 ensembl transcript 25 1173 . - . ID=Phyra87066;Parent=Phyra87066;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1527 . CDS 25 974 . - 0 ID=Phyra87066;Parent=Phyra87066;rank=2 scaffold_1527 . exon 25 974 . - . ID=Phyra87066.2;Parent=Phyra87066;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1527 . CDS 1148 1173 . - 0 ID=Phyra87066;Parent=Phyra87066;rank=1 scaffold_1527 . exon 1148 1173 . - . ID=Phyra87066.1;Parent=Phyra87066;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1542 1 4386 scaffold_1542 . repeat_region 1724 2210 . ? . description=dust scaffold_1542 . repeat_region 4074 4081 . ? . description=dust scaffold_1542 . repeat_region 4291 4300 . ? . description=dust scaffold_1542 ensembl protein_coding_gene 309 3422 . - . ID=Phyra87080;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1542000001;logic_name=jgi_phyra1 scaffold_1542 ensembl transcript 309 3422 . - . ID=Phyra87080;Parent=Phyra87080;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1542 . CDS 309 1607 . - 0 ID=Phyra87080;Parent=Phyra87080;rank=3 scaffold_1542 . exon 309 1607 . - . ID=Phyra87080.3;Parent=Phyra87080;constitutive=1;rank=3 scaffold_1542 . CDS 2241 2473 . - 0 ID=Phyra87080;Parent=Phyra87080;rank=2 scaffold_1542 . exon 2241 2473 . - . ID=Phyra87080.2;Parent=Phyra87080;constitutive=1;ensembl_phase=1;rank=2 scaffold_1542 . CDS 2504 3422 . - 0 ID=Phyra87080;Parent=Phyra87080;rank=1 scaffold_1542 . exon 2504 3422 . - . ID=Phyra87080.1;Parent=Phyra87080;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1526 1 4396 scaffold_1526 . biological_region 541 545 0.999 + . logic_name=eponine scaffold_1526 . repeat_region 2332 3239 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1544 1 4406 scaffold_1544 . repeat_region 1921 1998 . ? . description=dust scaffold_1544 . repeat_region 1922 1979 . ? . description=trf scaffold_1544 . repeat_region 1944 2123 . + . description=(CGA)n scaffold_1544 . biological_region 1947 1955 0.999 + . logic_name=eponine scaffold_1544 . repeat_region 1948 2072 . ? . description=trf scaffold_1544 . repeat_region 1950 2038 . ? . description=trf scaffold_1544 . repeat_region 1981 2088 . ? . description=trf scaffold_1544 . biological_region 1997 1999 0.999 + . logic_name=eponine scaffold_1544 . biological_region 2007 2010 0.999 - . logic_name=eponine scaffold_1544 . biological_region 2046 2052 0.999 - . logic_name=eponine scaffold_1544 . biological_region 2060 2063 0.999 + . logic_name=eponine scaffold_1544 . repeat_region 2262 2646 . ? . description=dust scaffold_1544 . biological_region 2816 2818 0.999 + . logic_name=eponine scaffold_1544 . biological_region 3247 3248 0.999 + . logic_name=eponine scaffold_1544 . biological_region 3875 3877 0.999 - . logic_name=eponine scaffold_1544 . biological_region 3890 3892 0.999 + . logic_name=eponine scaffold_1544 . biological_region 4117 4124 0.999 + . logic_name=eponine scaffold_1544 ensembl protein_coding_gene 184 2944 . + . ID=Phyra87082;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1544000001;logic_name=jgi_phyra1 scaffold_1544 ensembl transcript 184 2944 . + . ID=Phyra87082;Parent=Phyra87082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1544 . CDS 184 1270 . + 0 ID=Phyra87082;Parent=Phyra87082;rank=1 scaffold_1544 . exon 184 1270 . + . ID=Phyra87082.1;Parent=Phyra87082;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1544 . CDS 1331 1491 . + 0 ID=Phyra87082;Parent=Phyra87082;rank=2 scaffold_1544 . exon 1331 1491 . + . ID=Phyra87082.2;Parent=Phyra87082;constitutive=1;ensembl_phase=1;rank=2 scaffold_1544 . CDS 1834 2257 . + 0 ID=Phyra87082;Parent=Phyra87082;rank=3 scaffold_1544 . exon 1834 2257 . + . ID=Phyra87082.3;Parent=Phyra87082;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1544 . CDS 2937 2944 . + 0 ID=Phyra87082;Parent=Phyra87082;rank=4 scaffold_1544 . exon 2937 2944 . + . ID=Phyra87082.4;Parent=Phyra87082;constitutive=1;ensembl_phase=1;rank=4 scaffold_1544 ensembl protein_coding_gene 3116 4303 . - . ID=Phyra87083;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1544000002;logic_name=jgi_phyra1 scaffold_1544 ensembl transcript 3116 4303 . - . ID=Phyra87083;Parent=Phyra87083;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1544 . CDS 3116 4303 . - 0 ID=Phyra87083;Parent=Phyra87083;rank=1 scaffold_1544 . exon 3116 4303 . - . ID=Phyra87083.1;Parent=Phyra87083;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1558 1 4406 scaffold_1558 . biological_region 49 55 0.999 + . logic_name=eponine scaffold_1558 . repeat_region 97 156 . ? . description=dust scaffold_1558 . repeat_region 100 161 . + . description=(CACG)n scaffold_1558 . biological_region 444 444 0.999 + . logic_name=eponine scaffold_1558 . biological_region 497 502 0.999 - . logic_name=eponine scaffold_1558 . biological_region 538 543 0.999 - . logic_name=eponine scaffold_1558 . biological_region 593 600 0.999 + . logic_name=eponine scaffold_1558 . repeat_region 641 700 . ? . description=dust scaffold_1558 . repeat_region 644 705 . + . description=(CACG)n scaffold_1558 . biological_region 1171 1173 0.999 - . logic_name=eponine scaffold_1558 . repeat_region 1360 3290 . ? . description=dust scaffold_1558 ensembl tRNA_gene 194 279 . - . ID=EPrPRAG00000000138;biotype=tRNA;description=tRNA-Leu for anticodon AAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_1558 ensembl transcript 194 279 . - . ID=EPrPRAT00000000138;Parent=EPrPRAG00000000138;biotype=tRNA;logic_name=ncrna_eg scaffold_1558 . exon 194 279 . - . ID=EPrPRAE00000000138;Parent=EPrPRAT00000000138;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1524 1 4410 scaffold_1524 . repeat_region 130 1238 . - . description=GypsyPi-1c_I-int scaffold_1524 . repeat_region 1316 2457 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1531 1 4410 scaffold_1531 . biological_region 1811 1813 0.999 - . logic_name=eponine scaffold_1531 . biological_region 1827 1829 0.999 - . logic_name=eponine scaffold_1531 . biological_region 1868 1868 0.999 + . logic_name=eponine scaffold_1531 . biological_region 2853 2854 0.999 + . logic_name=eponine scaffold_1531 ensembl protein_coding_gene 5 1860 . - . ID=Phyra87069;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1531000001;logic_name=jgi_phyra1 scaffold_1531 ensembl transcript 5 1860 . - . ID=Phyra87069;Parent=Phyra87069;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1531 . CDS 5 1860 . - 0 ID=Phyra87069;Parent=Phyra87069;rank=1 scaffold_1531 . exon 5 1860 . - . ID=Phyra87069.1;Parent=Phyra87069;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1531 ensembl protein_coding_gene 2004 3203 . - . ID=Phyra87070;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1531000002;logic_name=jgi_phyra1 scaffold_1531 ensembl transcript 2004 3203 . - . ID=Phyra87070;Parent=Phyra87070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1531 . CDS 2004 3203 . - 0 ID=Phyra87070;Parent=Phyra87070;rank=1 scaffold_1531 . exon 2004 3203 . - . ID=Phyra87070.1;Parent=Phyra87070;constitutive=1;rank=1 scaffold_1531 ensembl protein_coding_gene 3851 4376 . + . ID=Phyra87071;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1531000003;logic_name=jgi_phyra1 scaffold_1531 ensembl transcript 3851 4376 . + . ID=Phyra87071;Parent=Phyra87071;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1531 . CDS 3851 4376 . + 0 ID=Phyra87071;Parent=Phyra87071;rank=1 scaffold_1531 . exon 3851 4376 . + . ID=Phyra87071.1;Parent=Phyra87071;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1588 1 4416 scaffold_1588 . biological_region 512 517 0.999 + . logic_name=eponine scaffold_1588 . biological_region 552 556 0.999 - . logic_name=eponine scaffold_1588 . repeat_region 1611 3357 . ? . description=dust scaffold_1588 . repeat_region 3991 4036 . ? . description=trf scaffold_1588 . biological_region 4051 4053 0.999 - . logic_name=eponine scaffold_1588 . repeat_region 4057 4145 . ? . description=trf scaffold_1588 . biological_region 4084 4086 0.999 - . logic_name=eponine scaffold_1588 . repeat_region 4171 4247 . ? . description=trf scaffold_1588 ensembl protein_coding_gene 15 636 . - . ID=Phyra87123;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1588000001;logic_name=jgi_phyra1 scaffold_1588 ensembl transcript 15 636 . - . ID=Phyra87123;Parent=Phyra87123;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1588 . CDS 15 163 . - 0 ID=Phyra87123;Parent=Phyra87123;rank=3 scaffold_1588 . exon 15 163 . - . ID=Phyra87123.3;Parent=Phyra87123;constitutive=1;ensembl_phase=1;rank=3 scaffold_1588 . CDS 220 334 . - 0 ID=Phyra87123;Parent=Phyra87123;rank=2 scaffold_1588 . exon 220 334 . - . ID=Phyra87123.2;Parent=Phyra87123;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1588 . CDS 400 636 . - 0 ID=Phyra87123;Parent=Phyra87123;rank=1 scaffold_1588 . exon 400 636 . - . ID=Phyra87123.1;Parent=Phyra87123;constitutive=1;rank=1 scaffold_1588 ensembl protein_coding_gene 3691 4366 . + . ID=Phyra87124;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1588000002;logic_name=jgi_phyra1 scaffold_1588 ensembl transcript 3691 4366 . + . ID=Phyra87124;Parent=Phyra87124;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1588 . CDS 3691 4366 . + 0 ID=Phyra87124;Parent=Phyra87124;rank=1 scaffold_1588 . exon 3691 4366 . + . ID=Phyra87124.1;Parent=Phyra87124;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1522 1 4419 scaffold_1522 . repeat_region 2081 3131 . ? . description=dust scaffold_1522 ensembl protein_coding_gene 137 1971 . - . ID=Phyra42174;biotype=protein_coding;external_name=gwEuk.1522.1.1;logic_name=jgi_phyra1 scaffold_1522 ensembl transcript 137 1971 . - . ID=Phyra42174;Parent=Phyra42174;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1522 . CDS 137 229 . - 0 ID=Phyra42174;Parent=Phyra42174;rank=6 scaffold_1522 . exon 137 229 . - . ID=Phyra42174.6;Parent=Phyra42174;constitutive=1;rank=6 scaffold_1522 . CDS 362 467 . - 0 ID=Phyra42174;Parent=Phyra42174;rank=5 scaffold_1522 . exon 362 467 . - . ID=Phyra42174.5;Parent=Phyra42174;constitutive=1;ensembl_phase=2;rank=5 scaffold_1522 . CDS 733 858 . - 0 ID=Phyra42174;Parent=Phyra42174;rank=4 scaffold_1522 . exon 733 858 . - . ID=Phyra42174.4;Parent=Phyra42174;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_1522 . CDS 942 1027 . - 0 ID=Phyra42174;Parent=Phyra42174;rank=3 scaffold_1522 . exon 942 1027 . - . ID=Phyra42174.3;Parent=Phyra42174;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1522 . CDS 1112 1400 . - 0 ID=Phyra42174;Parent=Phyra42174;rank=2 scaffold_1522 . exon 1112 1400 . - . ID=Phyra42174.2;Parent=Phyra42174;constitutive=1;ensembl_phase=2;rank=2 scaffold_1522 . CDS 1490 1971 . - 0 ID=Phyra42174;Parent=Phyra42174;rank=1 scaffold_1522 . exon 1490 1971 . - . ID=Phyra42174.1;Parent=Phyra42174;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1522 ensembl protein_coding_gene 3338 4312 . - . ID=Phyra72486;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1522000002;logic_name=jgi_phyra1 scaffold_1522 ensembl transcript 3338 4312 . - . ID=Phyra72486;Parent=Phyra72486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1522 . CDS 3338 4312 . - 0 ID=Phyra72486;Parent=Phyra72486;rank=1 scaffold_1522 . exon 3338 4312 . - . ID=Phyra72486.1;Parent=Phyra72486;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1523 1 4419 scaffold_1523 . repeat_region 1 341 . + . description=Polinton-1_PI scaffold_1523 . repeat_region 4373 4419 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1525 1 4420 scaffold_1525 . repeat_region 1955 2642 . ? . description=dust scaffold_1525 ensembl protein_coding_gene 30 1296 . - . ID=Phyra87064;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1525000001;logic_name=jgi_phyra1 scaffold_1525 ensembl transcript 30 1296 . - . ID=Phyra87064;Parent=Phyra87064;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1525 . CDS 30 1296 . - 0 ID=Phyra87064;Parent=Phyra87064;rank=1 scaffold_1525 . exon 30 1296 . - . ID=Phyra87064.1;Parent=Phyra87064;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1525 ensembl protein_coding_gene 2699 3630 . + . ID=Phyra87065;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1525000002;logic_name=jgi_phyra1 scaffold_1525 ensembl transcript 2699 3630 . + . ID=Phyra87065;Parent=Phyra87065;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1525 . CDS 2699 2701 . + 0 ID=Phyra87065;Parent=Phyra87065;rank=1 scaffold_1525 . exon 2699 2701 . + . ID=Phyra87065.1;Parent=Phyra87065;constitutive=1;rank=1 scaffold_1525 . CDS 2767 3294 . + 0 ID=Phyra87065;Parent=Phyra87065;rank=2 scaffold_1525 . exon 2767 3294 . + . ID=Phyra87065.2;Parent=Phyra87065;constitutive=1;rank=2 scaffold_1525 . CDS 3381 3485 . + 0 ID=Phyra87065;Parent=Phyra87065;rank=3 scaffold_1525 . exon 3381 3485 . + . ID=Phyra87065.3;Parent=Phyra87065;constitutive=1;rank=3 scaffold_1525 . CDS 3546 3586 . + 0 ID=Phyra87065;Parent=Phyra87065;rank=4 scaffold_1525 . exon 3546 3586 . + . ID=Phyra87065.4;Parent=Phyra87065;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1525 . CDS 3624 3630 . + 0 ID=Phyra87065;Parent=Phyra87065;rank=5 scaffold_1525 . exon 3624 3630 . + . ID=Phyra87065.5;Parent=Phyra87065;constitutive=1;ensembl_phase=2;rank=5 ##gff-version 3 ##sequence-region scaffold_1675 1 4420 scaffold_1675 . repeat_region 1672 3346 . ? . description=dust scaffold_1675 ensembl protein_coding_gene 218 529 . - . ID=Phyra42770;biotype=protein_coding;external_name=gwEuk.1675.2.1;logic_name=jgi_phyra1 scaffold_1675 ensembl transcript 218 529 . - . ID=Phyra42770;Parent=Phyra42770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1675 . CDS 218 529 . - 0 ID=Phyra42770;Parent=Phyra42770;rank=1 scaffold_1675 . exon 218 529 . - . ID=Phyra42770.1;Parent=Phyra42770;constitutive=1;rank=1 scaffold_1675 ensembl protein_coding_gene 3373 3612 . + . ID=Phyra42772;biotype=protein_coding;external_name=gwEuk.1675.4.1;logic_name=jgi_phyra1 scaffold_1675 ensembl transcript 3373 3612 . + . ID=Phyra42772;Parent=Phyra42772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1675 . CDS 3373 3612 . + 0 ID=Phyra42772;Parent=Phyra42772;rank=1 scaffold_1675 . exon 3373 3612 . + . ID=Phyra42772.1;Parent=Phyra42772;constitutive=1;rank=1 scaffold_1675 ensembl protein_coding_gene 3770 4363 . - . ID=Phyra87211;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1675000002;logic_name=jgi_phyra1 scaffold_1675 ensembl transcript 3770 4363 . - . ID=Phyra87211;Parent=Phyra87211;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1675 . CDS 3770 4188 . - 0 ID=Phyra87211;Parent=Phyra87211;rank=2 scaffold_1675 . exon 3770 4188 . - . ID=Phyra87211.2;Parent=Phyra87211;constitutive=1;ensembl_phase=1;rank=2 scaffold_1675 . CDS 4273 4363 . - 0 ID=Phyra87211;Parent=Phyra87211;rank=1 scaffold_1675 . exon 4273 4363 . - . ID=Phyra87211.1;Parent=Phyra87211;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1521 1 4421 scaffold_1521 . repeat_region 1399 1429 . ? . description=trf scaffold_1521 . repeat_region 1539 1656 . - . description=Polinton-1_PI scaffold_1521 . repeat_region 1736 1758 . ? . description=dust scaffold_1521 . repeat_region 2044 2673 . ? . description=dust scaffold_1521 . repeat_region 3069 3359 . - . description=Polinton-1_PI scaffold_1521 . repeat_region 3437 3543 . + . description=Polinton-1_PI scaffold_1521 . repeat_region 4140 4148 . ? . description=dust scaffold_1521 ensembl protein_coding_gene 2680 3236 . - . ID=Phyra87061;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1521000001;logic_name=jgi_phyra1 scaffold_1521 ensembl transcript 2680 3236 . - . ID=Phyra87061;Parent=Phyra87061;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1521 . CDS 2680 2771 . - 0 ID=Phyra87061;Parent=Phyra87061;rank=2 scaffold_1521 . exon 2680 2771 . - . ID=Phyra87061.2;Parent=Phyra87061;constitutive=1;ensembl_phase=1;rank=2 scaffold_1521 . CDS 2852 3236 . - 0 ID=Phyra87061;Parent=Phyra87061;rank=1 scaffold_1521 . exon 2852 3236 . - . ID=Phyra87061.1;Parent=Phyra87061;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1412 1 4422 scaffold_1412 . repeat_region 1969 2703 . ? . description=dust scaffold_1412 ensembl protein_coding_gene 280 1817 . - . ID=Phyra86964;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1412000001;logic_name=jgi_phyra1 scaffold_1412 ensembl transcript 280 1817 . - . ID=Phyra86964;Parent=Phyra86964;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1412 . CDS 280 325 . - 0 ID=Phyra86964;Parent=Phyra86964;rank=2 scaffold_1412 . exon 280 325 . - . ID=Phyra86964.2;Parent=Phyra86964;constitutive=1;ensembl_phase=2;rank=2 scaffold_1412 . CDS 625 1817 . - 0 ID=Phyra86964;Parent=Phyra86964;rank=1 scaffold_1412 . exon 625 1817 . - . ID=Phyra86964.1;Parent=Phyra86964;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1412 ensembl protein_coding_gene 3285 4218 . - . ID=Phyra86965;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1412000002;logic_name=jgi_phyra1 scaffold_1412 ensembl transcript 3285 4218 . - . ID=Phyra86965;Parent=Phyra86965;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1412 . CDS 3285 3321 . - 0 ID=Phyra86965;Parent=Phyra86965;rank=2 scaffold_1412 . exon 3285 3321 . - . ID=Phyra86965.2;Parent=Phyra86965;constitutive=1;ensembl_phase=2;rank=2 scaffold_1412 . CDS 3518 4218 . - 0 ID=Phyra86965;Parent=Phyra86965;rank=1 scaffold_1412 . exon 3518 4218 . - . ID=Phyra86965.1;Parent=Phyra86965;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1519 1 4424 scaffold_1519 ensembl protein_coding_gene 3192 4375 . + . ID=Phyra87060;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1519000001;logic_name=jgi_phyra1 scaffold_1519 ensembl transcript 3192 4375 . + . ID=Phyra87060;Parent=Phyra87060;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1519 . CDS 3192 4375 . + 0 ID=Phyra87060;Parent=Phyra87060;rank=1 scaffold_1519 . exon 3192 4375 . + . ID=Phyra87060.1;Parent=Phyra87060;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1518 1 4426 scaffold_1518 . repeat_region 2205 3478 . ? . description=dust scaffold_1518 . biological_region 3920 3922 0.999 - . logic_name=eponine scaffold_1518 . biological_region 3975 3978 0.999 + . logic_name=eponine scaffold_1518 ensembl protein_coding_gene 1791 4351 . - . ID=Phyra87059;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1518000001;logic_name=jgi_phyra1 scaffold_1518 ensembl transcript 1791 4351 . - . ID=Phyra87059;Parent=Phyra87059;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1518 . CDS 1791 2145 . - 0 ID=Phyra87059;Parent=Phyra87059;rank=3 scaffold_1518 . exon 1791 2145 . - . ID=Phyra87059.3;Parent=Phyra87059;constitutive=1;ensembl_phase=2;rank=3 scaffold_1518 . CDS 3519 3603 . - 0 ID=Phyra87059;Parent=Phyra87059;rank=2 scaffold_1518 . exon 3519 3603 . - . ID=Phyra87059.2;Parent=Phyra87059;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1518 . CDS 3741 4350 . - 0 ID=Phyra87059;Parent=Phyra87059;rank=1 scaffold_1518 . exon 3741 4351 . - . ID=Phyra87059.1;Parent=Phyra87059;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1520 1 4426 scaffold_1520 . repeat_region 964 3118 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1515 1 4437 scaffold_1515 . biological_region 1017 1021 0.999 - . logic_name=eponine scaffold_1515 . repeat_region 1776 2535 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1516 1 4437 scaffold_1516 . repeat_region 1258 2113 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1514 1 4438 scaffold_1514 . biological_region 206 208 0.999 + . logic_name=eponine scaffold_1514 . repeat_region 207 570 . ? . description=trf scaffold_1514 . repeat_region 212 570 . ? . description=trf scaffold_1514 . repeat_region 234 518 . ? . description=trf scaffold_1514 . biological_region 317 317 0.999 + . logic_name=eponine scaffold_1514 . repeat_region 614 654 . ? . description=trf scaffold_1514 . repeat_region 2137 3029 . ? . description=dust scaffold_1514 . repeat_region 3461 3516 . ? . description=trf scaffold_1514 ensembl protein_coding_gene 53 1652 . + . ID=Phyra87057;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1514000001;logic_name=jgi_phyra1 scaffold_1514 ensembl transcript 53 1652 . + . ID=Phyra87057;Parent=Phyra87057;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1514 . CDS 53 89 . + 0 ID=Phyra87057;Parent=Phyra87057;rank=1 scaffold_1514 . exon 53 89 . + . ID=Phyra87057.1;Parent=Phyra87057;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1514 . CDS 157 701 . + 0 ID=Phyra87057;Parent=Phyra87057;rank=2 scaffold_1514 . exon 157 701 . + . ID=Phyra87057.2;Parent=Phyra87057;constitutive=1;ensembl_phase=1;rank=2 scaffold_1514 . CDS 791 1574 . + 0 ID=Phyra87057;Parent=Phyra87057;rank=3 scaffold_1514 . exon 791 1574 . + . ID=Phyra87057.3;Parent=Phyra87057;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1514 . CDS 1648 1652 . + 0 ID=Phyra87057;Parent=Phyra87057;rank=4 scaffold_1514 . exon 1648 1652 . + . ID=Phyra87057.4;Parent=Phyra87057;constitutive=1;ensembl_phase=1;rank=4 ##gff-version 3 ##sequence-region scaffold_1561 1 4440 scaffold_1561 . biological_region 1124 1131 0.999 - . logic_name=eponine scaffold_1561 . repeat_region 1952 3196 . ? . description=dust scaffold_1561 ensembl protein_coding_gene 3310 4380 . + . ID=Phyra87098;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1561000001;logic_name=jgi_phyra1 scaffold_1561 ensembl transcript 3310 4380 . + . ID=Phyra87098;Parent=Phyra87098;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1561 . CDS 3310 3451 . + 0 ID=Phyra87098;Parent=Phyra87098;rank=1 scaffold_1561 . exon 3310 3451 . + . ID=Phyra87098.1;Parent=Phyra87098;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1561 . CDS 3538 3747 . + 0 ID=Phyra87098;Parent=Phyra87098;rank=2 scaffold_1561 . exon 3538 3747 . + . ID=Phyra87098.2;Parent=Phyra87098;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1561 . CDS 3822 4120 . + 0 ID=Phyra87098;Parent=Phyra87098;rank=3 scaffold_1561 . exon 3822 4120 . + . ID=Phyra87098.3;Parent=Phyra87098;constitutive=1;ensembl_phase=1;rank=3 scaffold_1561 . CDS 4145 4213 . + 0 ID=Phyra87098;Parent=Phyra87098;rank=4 scaffold_1561 . exon 4145 4213 . + . ID=Phyra87098.4;Parent=Phyra87098;constitutive=1;rank=4 scaffold_1561 . CDS 4369 4380 . + 0 ID=Phyra87098;Parent=Phyra87098;rank=5 scaffold_1561 . exon 4369 4380 . + . ID=Phyra87098.5;Parent=Phyra87098;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_1513 1 4441 scaffold_1513 . repeat_region 1050 1096 . ? . description=trf scaffold_1513 . repeat_region 1718 3506 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1511 1 4447 scaffold_1511 . repeat_region 974 1198 . + . description=GypsyPi-1c_I-int scaffold_1511 . biological_region 1203 1204 0.999 - . logic_name=eponine scaffold_1511 . repeat_region 1433 1644 . + . description=GypsyPi-1c_I-int scaffold_1511 . biological_region 1468 1473 0.999 + . logic_name=eponine scaffold_1511 . biological_region 1540 1540 0.999 - . logic_name=eponine scaffold_1511 . biological_region 1547 1549 0.999 + . logic_name=eponine scaffold_1511 . biological_region 1571 1573 0.999 + . logic_name=eponine scaffold_1511 . biological_region 1582 1592 0.999 - . logic_name=eponine scaffold_1511 . repeat_region 1863 2169 . + . description=GypsyPi-1c_LTR scaffold_1511 ensembl protein_coding_gene 961 1680 . - . ID=Phyra87055;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1511000001;logic_name=jgi_phyra1 scaffold_1511 ensembl transcript 961 1680 . - . ID=Phyra87055;Parent=Phyra87055;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1511 . CDS 961 1680 . - 0 ID=Phyra87055;Parent=Phyra87055;rank=1 scaffold_1511 . exon 961 1680 . - . ID=Phyra87055.1;Parent=Phyra87055;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1512 1 4449 scaffold_1512 . repeat_region 2135 3373 . ? . description=dust scaffold_1512 ensembl protein_coding_gene 591 1169 . + . ID=Phyra87056;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1512000001;logic_name=jgi_phyra1 scaffold_1512 ensembl transcript 591 1169 . + . ID=Phyra87056;Parent=Phyra87056;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1512 . CDS 591 1169 . + 0 ID=Phyra87056;Parent=Phyra87056;rank=1 scaffold_1512 . exon 591 1169 . + . ID=Phyra87056.1;Parent=Phyra87056;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1508 1 4450 scaffold_1508 . biological_region 302 304 0.999 - . logic_name=eponine scaffold_1508 . repeat_region 1135 1971 . ? . description=dust scaffold_1508 . biological_region 2891 2898 0.999 + . logic_name=eponine scaffold_1508 . repeat_region 4309 4334 . ? . description=trf scaffold_1508 ensembl protein_coding_gene 10 949 . - . ID=Phyra87053;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1508000001;logic_name=jgi_phyra1 scaffold_1508 ensembl transcript 10 949 . - . ID=Phyra87053;Parent=Phyra87053;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1508 . CDS 10 949 . - 0 ID=Phyra87053;Parent=Phyra87053;rank=1 scaffold_1508 . exon 10 949 . - . ID=Phyra87053.1;Parent=Phyra87053;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1509 1 4450 scaffold_1509 . repeat_region 940 2164 . ? . description=dust scaffold_1509 . repeat_region 2371 2428 . ? . description=trf scaffold_1509 . repeat_region 2371 2450 . ? . description=trf scaffold_1509 . biological_region 3368 3372 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1505 1 4451 scaffold_1505 . repeat_region 2036 2999 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1506 1 4451 scaffold_1506 . repeat_region 1233 2084 . ? . description=dust scaffold_1506 . repeat_region 2215 2243 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1507 1 4451 scaffold_1507 . biological_region 755 758 0.999 - . logic_name=eponine scaffold_1507 . biological_region 934 934 0.999 - . logic_name=eponine scaffold_1507 . biological_region 1475 1477 0.999 - . logic_name=eponine scaffold_1507 . biological_region 1798 1799 0.999 + . logic_name=eponine scaffold_1507 . repeat_region 2029 3327 . ? . description=dust scaffold_1507 . repeat_region 3665 3672 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1504 1 4453 scaffold_1504 . repeat_region 1264 2570 . ? . description=dust scaffold_1504 ensembl protein_coding_gene 168 896 . - . ID=Phyra87052;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1504000001;logic_name=jgi_phyra1 scaffold_1504 ensembl transcript 168 896 . - . ID=Phyra87052;Parent=Phyra87052;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1504 . CDS 168 425 . - 0 ID=Phyra87052;Parent=Phyra87052;rank=3 scaffold_1504 . exon 168 425 . - . ID=Phyra87052.3;Parent=Phyra87052;constitutive=1;rank=3 scaffold_1504 . CDS 481 588 . - 0 ID=Phyra87052;Parent=Phyra87052;rank=2 scaffold_1504 . exon 481 588 . - . ID=Phyra87052.2;Parent=Phyra87052;constitutive=1;rank=2 scaffold_1504 . CDS 657 896 . - 0 ID=Phyra87052;Parent=Phyra87052;rank=1 scaffold_1504 . exon 657 896 . - . ID=Phyra87052.1;Parent=Phyra87052;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_891 1 4456 scaffold_891 . repeat_region 1682 1706 . ? . description=trf scaffold_891 . repeat_region 1682 2895 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1502 1 4467 scaffold_1502 . biological_region 113 118 0.999 + . logic_name=eponine scaffold_1502 . biological_region 297 303 0.999 + . logic_name=eponine scaffold_1502 . repeat_region 877 2284 . ? . description=dust scaffold_1502 . repeat_region 2636 2643 . ? . description=dust scaffold_1502 . repeat_region 3275 3422 . + . description=(ATG)n scaffold_1502 . repeat_region 3279 3348 . ? . description=trf scaffold_1502 . repeat_region 3311 3363 . ? . description=trf scaffold_1502 . repeat_region 3350 3414 . ? . description=trf scaffold_1502 . biological_region 3905 3905 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1501 1 4473 scaffold_1501 . repeat_region 1371 3030 . ? . description=dust scaffold_1501 ensembl protein_coding_gene 3091 4444 . - . ID=Phyra87050;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1501000001;logic_name=jgi_phyra1 scaffold_1501 ensembl transcript 3091 4444 . - . ID=Phyra87050;Parent=Phyra87050;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1501 . CDS 3091 3109 . - 0 ID=Phyra87050;Parent=Phyra87050;rank=4 scaffold_1501 . exon 3091 3109 . - . ID=Phyra87050.4;Parent=Phyra87050;constitutive=1;ensembl_phase=2;rank=4 scaffold_1501 . CDS 3184 3219 . - 0 ID=Phyra87050;Parent=Phyra87050;rank=3 scaffold_1501 . exon 3184 3219 . - . ID=Phyra87050.3;Parent=Phyra87050;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1501 . CDS 3277 4050 . - 0 ID=Phyra87050;Parent=Phyra87050;rank=2 scaffold_1501 . exon 3277 4050 . - . ID=Phyra87050.2;Parent=Phyra87050;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1501 . CDS 4125 4444 . - 0 ID=Phyra87050;Parent=Phyra87050;rank=1 scaffold_1501 . exon 4125 4444 . - . ID=Phyra87050.1;Parent=Phyra87050;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1500 1 4476 scaffold_1500 . repeat_region 270 281 . ? . description=dust scaffold_1500 ensembl protein_coding_gene 2634 3530 . + . ID=Phyra42131;biotype=protein_coding;external_name=gwEuk.1500.2.1;logic_name=jgi_phyra1 scaffold_1500 ensembl transcript 2634 3530 . + . ID=Phyra42131;Parent=Phyra42131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1500 . CDS 2634 3530 . + 0 ID=Phyra42131;Parent=Phyra42131;rank=1 scaffold_1500 . exon 2634 3530 . + . ID=Phyra42131.1;Parent=Phyra42131;constitutive=1;rank=1 scaffold_1500 ensembl protein_coding_gene 417 2199 . + . ID=Phyra87049;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1500000001;logic_name=jgi_phyra1 scaffold_1500 ensembl transcript 417 2199 . + . ID=Phyra87049;Parent=Phyra87049;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1500 . CDS 417 2050 . + 0 ID=Phyra87049;Parent=Phyra87049;rank=1 scaffold_1500 . exon 417 2050 . + . ID=Phyra87049.1;Parent=Phyra87049;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1500 . CDS 2193 2199 . + 0 ID=Phyra87049;Parent=Phyra87049;rank=2 scaffold_1500 . exon 2193 2199 . + . ID=Phyra87049.2;Parent=Phyra87049;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1554 1 4477 scaffold_1554 . repeat_region 3 247 . - . description=GypsyPi-1c_I-int scaffold_1554 . repeat_region 470 1420 . - . description=GypsyPi-1c_I-int scaffold_1554 . repeat_region 1421 2981 . ? . description=dust scaffold_1554 . biological_region 4186 4190 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1498 1 4478 scaffold_1498 . repeat_region 1165 2580 . ? . description=dust scaffold_1498 . repeat_region 3276 4475 . - . description=GypsyPi-1c_I-int scaffold_1498 ensembl protein_coding_gene 3468 3779 . - . ID=Phyra41955;biotype=protein_coding;external_name=gwEuk.1498.2.1;logic_name=jgi_phyra1 scaffold_1498 ensembl transcript 3468 3779 . - . ID=Phyra41955;Parent=Phyra41955;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1498 . CDS 3468 3779 . - 0 ID=Phyra41955;Parent=Phyra41955;rank=1 scaffold_1498 . exon 3468 3779 . - . ID=Phyra41955.1;Parent=Phyra41955;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1495 1 4480 scaffold_1495 . biological_region 394 398 0.999 - . logic_name=eponine scaffold_1495 . repeat_region 1163 1851 . ? . description=dust scaffold_1495 . repeat_region 2245 2286 . ? . description=trf scaffold_1495 ensembl protein_coding_gene 12 1091 . - . ID=Phyra87047;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1495000001;logic_name=jgi_phyra1 scaffold_1495 ensembl transcript 12 1091 . - . ID=Phyra87047;Parent=Phyra87047;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1495 . CDS 12 1091 . - 0 ID=Phyra87047;Parent=Phyra87047;rank=1 scaffold_1495 . exon 12 1091 . - . ID=Phyra87047.1;Parent=Phyra87047;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1494 1 4486 scaffold_1494 . biological_region 117 120 0.999 + . logic_name=eponine scaffold_1494 . biological_region 224 227 0.999 + . logic_name=eponine scaffold_1494 . biological_region 996 1000 0.999 + . logic_name=eponine scaffold_1494 . biological_region 1005 1007 0.999 - . logic_name=eponine scaffold_1494 . repeat_region 1227 2050 . ? . description=dust scaffold_1494 . biological_region 2128 2132 0.999 + . logic_name=eponine scaffold_1494 . biological_region 2799 2800 0.999 + . logic_name=eponine scaffold_1494 . biological_region 3122 3124 0.999 - . logic_name=eponine scaffold_1494 . biological_region 3495 3500 0.999 + . logic_name=eponine scaffold_1494 . biological_region 3934 3937 0.999 + . logic_name=eponine scaffold_1494 . biological_region 3987 3990 0.999 + . logic_name=eponine scaffold_1494 ensembl snRNA_gene 392 576 . - . ID=EPrPRAG00000000198;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_1494 ensembl snRNA 392 576 . - . ID=EPrPRAT00000000198;Parent=EPrPRAG00000000198;biotype=snRNA;logic_name=ncrna_eg scaffold_1494 . exon 392 576 . - . ID=EPrPRAE00000000198;Parent=EPrPRAT00000000198;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1494 ensembl protein_coding_gene 734 4378 . - . ID=Phyra87046;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1494000001;logic_name=jgi_phyra1 scaffold_1494 ensembl transcript 734 4378 . - . ID=Phyra87046;Parent=Phyra87046;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1494 . CDS 734 1156 . - 0 ID=Phyra87046;Parent=Phyra87046;rank=2 scaffold_1494 . exon 734 1156 . - . ID=Phyra87046.2;Parent=Phyra87046;constitutive=1;rank=2 scaffold_1494 . CDS 2093 4378 . - 0 ID=Phyra87046;Parent=Phyra87046;rank=1 scaffold_1494 . exon 2093 4378 . - . ID=Phyra87046.1;Parent=Phyra87046;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1496 1 4489 scaffold_1496 ensembl protein_coding_gene 672 4183 . + . ID=Phyra87048;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1496000001;logic_name=jgi_phyra1 scaffold_1496 ensembl transcript 672 4183 . + . ID=Phyra87048;Parent=Phyra87048;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1496 . CDS 672 755 . + 0 ID=Phyra87048;Parent=Phyra87048;rank=1 scaffold_1496 . exon 672 755 . + . ID=Phyra87048.1;Parent=Phyra87048;constitutive=1;rank=1 scaffold_1496 . CDS 849 1037 . + 0 ID=Phyra87048;Parent=Phyra87048;rank=2 scaffold_1496 . exon 849 1037 . + . ID=Phyra87048.2;Parent=Phyra87048;constitutive=1;rank=2 scaffold_1496 . CDS 1113 1926 . + 0 ID=Phyra87048;Parent=Phyra87048;rank=3 scaffold_1496 . exon 1113 1926 . + . ID=Phyra87048.3;Parent=Phyra87048;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1496 . CDS 1995 2419 . + 0 ID=Phyra87048;Parent=Phyra87048;rank=4 scaffold_1496 . exon 1995 2419 . + . ID=Phyra87048.4;Parent=Phyra87048;constitutive=1;ensembl_phase=1;rank=4 scaffold_1496 . CDS 2744 2981 . + 0 ID=Phyra87048;Parent=Phyra87048;rank=5 scaffold_1496 . exon 2744 2981 . + . ID=Phyra87048.5;Parent=Phyra87048;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1496 . CDS 3492 4073 . + 0 ID=Phyra87048;Parent=Phyra87048;rank=6 scaffold_1496 . exon 3492 4073 . + . ID=Phyra87048.6;Parent=Phyra87048;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_1496 . CDS 4161 4183 . + 0 ID=Phyra87048;Parent=Phyra87048;rank=7 scaffold_1496 . exon 4161 4183 . + . ID=Phyra87048.7;Parent=Phyra87048;constitutive=1;ensembl_phase=1;rank=7 ##gff-version 3 ##sequence-region scaffold_1492 1 4490 scaffold_1492 . repeat_region 562 604 . ? . description=trf scaffold_1492 . repeat_region 703 749 . ? . description=trf scaffold_1492 . repeat_region 1596 3522 . ? . description=dust scaffold_1492 . repeat_region 3642 3672 . ? . description=trf scaffold_1492 ensembl protein_coding_gene 53 561 . + . ID=Phyra72484;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1492000001;logic_name=jgi_phyra1 scaffold_1492 ensembl transcript 53 561 . + . ID=Phyra72484;Parent=Phyra72484;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1492 . CDS 53 440 . + 0 ID=Phyra72484;Parent=Phyra72484;rank=1 scaffold_1492 . exon 53 440 . + . ID=Phyra72484.1;Parent=Phyra72484;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1492 . CDS 512 561 . + 0 ID=Phyra72484;Parent=Phyra72484;rank=2 scaffold_1492 . exon 512 561 . + . ID=Phyra72484.2;Parent=Phyra72484;constitutive=1;ensembl_phase=1;rank=2 scaffold_1492 ensembl protein_coding_gene 813 4452 . - . ID=Phyra87045;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1492000002;logic_name=jgi_phyra1 scaffold_1492 ensembl transcript 813 4452 . - . ID=Phyra87045;Parent=Phyra87045;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1492 . CDS 813 1526 . - 0 ID=Phyra87045;Parent=Phyra87045;rank=2 scaffold_1492 . exon 813 1526 . - . ID=Phyra87045.2;Parent=Phyra87045;constitutive=1;rank=2 scaffold_1492 . CDS 3547 4452 . - 0 ID=Phyra87045;Parent=Phyra87045;rank=1 scaffold_1492 . exon 3547 4452 . - . ID=Phyra87045.1;Parent=Phyra87045;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1321 1 4491 scaffold_1321 ensembl protein_coding_gene 2854 4464 . - . ID=Phyra86842;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1321000001;logic_name=jgi_phyra1 scaffold_1321 ensembl transcript 2854 4464 . - . ID=Phyra86842;Parent=Phyra86842;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1321 . CDS 2854 4464 . - 0 ID=Phyra86842;Parent=Phyra86842;rank=1 scaffold_1321 . exon 2854 4464 . - . ID=Phyra86842.1;Parent=Phyra86842;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1488 1 4496 scaffold_1488 . repeat_region 3874 3893 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1503 1 4497 scaffold_1503 . repeat_region 111 126 . ? . description=dust scaffold_1503 . repeat_region 1664 2177 . ? . description=dust scaffold_1503 . repeat_region 3939 3959 . ? . description=trf scaffold_1503 ensembl protein_coding_gene 2286 3344 . + . ID=Phyra87051;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1503000001;logic_name=jgi_phyra1 scaffold_1503 ensembl transcript 2286 3344 . + . ID=Phyra87051;Parent=Phyra87051;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1503 . CDS 2286 3344 . + 0 ID=Phyra87051;Parent=Phyra87051;rank=1 scaffold_1503 . exon 2286 3344 . + . ID=Phyra87051.1;Parent=Phyra87051;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1493 1 4507 scaffold_1493 . repeat_region 989 997 . ? . description=dust scaffold_1493 . repeat_region 1301 1309 . ? . description=dust scaffold_1493 . repeat_region 1802 3194 . ? . description=dust scaffold_1493 . repeat_region 4388 4395 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1530 1 4507 scaffold_1530 . repeat_region 1906 1990 . ? . description=trf scaffold_1530 . repeat_region 2168 2821 . ? . description=dust scaffold_1530 . repeat_region 3051 3062 . ? . description=dust scaffold_1530 . repeat_region 3159 3168 . ? . description=dust scaffold_1530 . repeat_region 3571 3702 . ? . description=dust scaffold_1530 ensembl pseudogene 4162 4505 . + . ID=Phyra42197;biotype=pseudogene;external_name=gwEuk.1530.5.1;logic_name=jgi_phyra1 scaffold_1530 ensembl pseudogene 4162 4505 . + . ID=Phyra42197;Parent=Phyra42197;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1530 . exon 4162 4505 . + . ID=Phyra42197.1;Parent=Phyra42197;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1486 1 4508 scaffold_1486 ensembl protein_coding_gene 1309 4482 . + . ID=Phyra87041;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1486000001;logic_name=jgi_phyra1 scaffold_1486 ensembl transcript 1309 4482 . + . ID=Phyra87041;Parent=Phyra87041;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1486 . CDS 1309 4482 . + 0 ID=Phyra87041;Parent=Phyra87041;rank=1 scaffold_1486 . exon 1309 4482 . + . ID=Phyra87041.1;Parent=Phyra87041;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1485 1 4509 scaffold_1485 . biological_region 1766 1769 0.999 + . logic_name=eponine scaffold_1485 ensembl protein_coding_gene 69 4489 . + . ID=Phyra87040;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1485000001;logic_name=jgi_phyra1 scaffold_1485 ensembl transcript 69 4489 . + . ID=Phyra87040;Parent=Phyra87040;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1485 . CDS 69 1532 . + 0 ID=Phyra87040;Parent=Phyra87040;rank=1 scaffold_1485 . exon 69 1532 . + . ID=Phyra87040.1;Parent=Phyra87040;constitutive=1;rank=1 scaffold_1485 . CDS 1654 3179 . + 0 ID=Phyra87040;Parent=Phyra87040;rank=2 scaffold_1485 . exon 1654 3179 . + . ID=Phyra87040.2;Parent=Phyra87040;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1485 . CDS 3329 4489 . + 0 ID=Phyra87040;Parent=Phyra87040;rank=3 scaffold_1485 . exon 3329 4489 . + . ID=Phyra87040.3;Parent=Phyra87040;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_1482 1 4516 scaffold_1482 . repeat_region 27 301 . - . description=GypsyPi-1c_I-int scaffold_1482 . repeat_region 536 1862 . - . description=GypsyPi-1c_I-int scaffold_1482 . repeat_region 2248 3577 . ? . description=dust scaffold_1482 ensembl protein_coding_gene 137 2147 . - . ID=Phyra87037;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1482000001;logic_name=jgi_phyra1 scaffold_1482 ensembl transcript 137 2147 . - . ID=Phyra87037;Parent=Phyra87037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1482 . CDS 137 616 . - 0 ID=Phyra87037;Parent=Phyra87037;rank=5 scaffold_1482 . exon 137 616 . - . ID=Phyra87037.5;Parent=Phyra87037;constitutive=1;rank=5 scaffold_1482 . CDS 920 1129 . - 0 ID=Phyra87037;Parent=Phyra87037;rank=4 scaffold_1482 . exon 920 1129 . - . ID=Phyra87037.4;Parent=Phyra87037;constitutive=1;rank=4 scaffold_1482 . CDS 1193 1352 . - 0 ID=Phyra87037;Parent=Phyra87037;rank=3 scaffold_1482 . exon 1193 1352 . - . ID=Phyra87037.3;Parent=Phyra87037;constitutive=1;ensembl_phase=2;rank=3 scaffold_1482 . CDS 1425 1721 . - 0 ID=Phyra87037;Parent=Phyra87037;rank=2 scaffold_1482 . exon 1425 1721 . - . ID=Phyra87037.2;Parent=Phyra87037;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1482 . CDS 1834 2147 . - 0 ID=Phyra87037;Parent=Phyra87037;rank=1 scaffold_1482 . exon 1834 2147 . - . ID=Phyra87037.1;Parent=Phyra87037;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1481 1 4517 scaffold_1481 . biological_region 163 163 0.999 + . logic_name=eponine scaffold_1481 . repeat_region 1346 2988 . ? . description=dust scaffold_1481 . biological_region 3265 3269 0.999 + . logic_name=eponine scaffold_1481 ensembl protein_coding_gene 65 808 . - . ID=Phyra87036;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1481000001;logic_name=jgi_phyra1 scaffold_1481 ensembl transcript 65 808 . - . ID=Phyra87036;Parent=Phyra87036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1481 . CDS 65 808 . - 0 ID=Phyra87036;Parent=Phyra87036;rank=1 scaffold_1481 . exon 65 808 . - . ID=Phyra87036.1;Parent=Phyra87036;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1483 1 4517 scaffold_1483 . repeat_region 614 623 . ? . description=dust scaffold_1483 . repeat_region 686 693 . ? . description=dust scaffold_1483 . repeat_region 2603 3298 . ? . description=dust scaffold_1483 . repeat_region 3720 3797 . ? . description=trf scaffold_1483 . repeat_region 3932 3956 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1484 1 4517 scaffold_1484 . biological_region 3856 3857 0.999 + . logic_name=eponine scaffold_1484 . repeat_region 3987 4517 . ? . description=trf scaffold_1484 ensembl protein_coding_gene 1160 3016 . + . ID=Phyra87038;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1484000001;logic_name=jgi_phyra1 scaffold_1484 ensembl transcript 1160 3016 . + . ID=Phyra87038;Parent=Phyra87038;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1484 . CDS 1160 3016 . + 0 ID=Phyra87038;Parent=Phyra87038;rank=1 scaffold_1484 . exon 1160 3016 . + . ID=Phyra87038.1;Parent=Phyra87038;constitutive=1;rank=1 scaffold_1484 ensembl protein_coding_gene 3350 4398 . - . ID=Phyra87039;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1484000002;logic_name=jgi_phyra1 scaffold_1484 ensembl transcript 3350 4398 . - . ID=Phyra87039;Parent=Phyra87039;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1484 . CDS 3350 4396 . - 0 ID=Phyra87039;Parent=Phyra87039;rank=1 scaffold_1484 . exon 3350 4398 . - . ID=Phyra87039.1;Parent=Phyra87039;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1499 1 4529 scaffold_1499 . repeat_region 1694 2218 . ? . description=dust scaffold_1499 . repeat_region 3454 3503 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1479 1 4531 scaffold_1479 . repeat_region 904 1811 . ? . description=dust scaffold_1479 . biological_region 1964 1969 0.999 + . logic_name=eponine scaffold_1479 ensembl protein_coding_gene 1814 3956 . + . ID=Phyra87033;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1479000001;logic_name=jgi_phyra1 scaffold_1479 ensembl transcript 1814 3956 . + . ID=Phyra87033;Parent=Phyra87033;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1479 . CDS 1814 2260 . + 0 ID=Phyra87033;Parent=Phyra87033;rank=1 scaffold_1479 . exon 1814 2260 . + . ID=Phyra87033.1;Parent=Phyra87033;constitutive=1;rank=1 scaffold_1479 . CDS 2344 2486 . + 0 ID=Phyra87033;Parent=Phyra87033;rank=2 scaffold_1479 . exon 2344 2486 . + . ID=Phyra87033.2;Parent=Phyra87033;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1479 . CDS 2581 2656 . + 0 ID=Phyra87033;Parent=Phyra87033;rank=3 scaffold_1479 . exon 2581 2656 . + . ID=Phyra87033.3;Parent=Phyra87033;constitutive=1;ensembl_phase=2;rank=3 scaffold_1479 . CDS 2799 3439 . + 0 ID=Phyra87033;Parent=Phyra87033;rank=4 scaffold_1479 . exon 2799 3439 . + . ID=Phyra87033.4;Parent=Phyra87033;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1479 . CDS 3532 3562 . + 0 ID=Phyra87033;Parent=Phyra87033;rank=5 scaffold_1479 . exon 3532 3562 . + . ID=Phyra87033.5;Parent=Phyra87033;constitutive=1;ensembl_phase=2;rank=5 scaffold_1479 . CDS 3633 3956 . + 0 ID=Phyra87033;Parent=Phyra87033;rank=6 scaffold_1479 . exon 3633 3956 . + . ID=Phyra87033.6;Parent=Phyra87033;constitutive=1;rank=6 ##gff-version 3 ##sequence-region scaffold_1475 1 4534 scaffold_1475 . repeat_region 1278 1338 . ? . description=trf scaffold_1475 . biological_region 2634 2637 0.999 - . logic_name=eponine scaffold_1475 . biological_region 2686 2689 0.999 - . logic_name=eponine scaffold_1475 . repeat_region 2895 2902 . ? . description=dust scaffold_1475 ensembl protein_coding_gene 1289 4050 . + . ID=Phyra87028;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1475000001;logic_name=jgi_phyra1 scaffold_1475 ensembl transcript 1289 4050 . + . ID=Phyra87028;Parent=Phyra87028;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1475 . CDS 1289 1317 . + 0 ID=Phyra87028;Parent=Phyra87028;rank=1 scaffold_1475 . exon 1289 1317 . + . ID=Phyra87028.1;Parent=Phyra87028;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1475 . CDS 1362 1580 . + 0 ID=Phyra87028;Parent=Phyra87028;rank=2 scaffold_1475 . exon 1362 1580 . + . ID=Phyra87028.2;Parent=Phyra87028;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1475 . CDS 1676 2863 . + 0 ID=Phyra87028;Parent=Phyra87028;rank=3 scaffold_1475 . exon 1676 2863 . + . ID=Phyra87028.3;Parent=Phyra87028;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1475 . CDS 2982 4050 . + 0 ID=Phyra87028;Parent=Phyra87028;rank=4 scaffold_1475 . exon 2982 4050 . + . ID=Phyra87028.4;Parent=Phyra87028;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_1477 1 4534 scaffold_1477 . repeat_region 169 198 . ? . description=trf scaffold_1477 . repeat_region 814 1246 . ? . description=dust scaffold_1477 . biological_region 2372 2376 0.999 - . logic_name=eponine scaffold_1477 . biological_region 3671 3676 0.999 + . logic_name=eponine scaffold_1477 . biological_region 3738 3741 0.999 - . logic_name=eponine scaffold_1477 . biological_region 3767 3774 0.999 - . logic_name=eponine scaffold_1477 ensembl protein_coding_gene 1812 3512 . - . ID=Phyra87031;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1477000001;logic_name=jgi_phyra1 scaffold_1477 ensembl transcript 1812 3512 . - . ID=Phyra87031;Parent=Phyra87031;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1477 . CDS 1812 3131 . - 0 ID=Phyra87031;Parent=Phyra87031;rank=2 scaffold_1477 . exon 1812 3131 . - . ID=Phyra87031.2;Parent=Phyra87031;constitutive=1;rank=2 scaffold_1477 . CDS 3285 3512 . - 0 ID=Phyra87031;Parent=Phyra87031;rank=1 scaffold_1477 . exon 3285 3512 . - . ID=Phyra87031.1;Parent=Phyra87031;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1476 1 4535 scaffold_1476 . repeat_region 2628 2636 . ? . description=dust scaffold_1476 . biological_region 3663 3663 0.999 - . logic_name=eponine scaffold_1476 ensembl protein_coding_gene 1 2622 . + . ID=Phyra87029;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1476000001;logic_name=jgi_phyra1 scaffold_1476 ensembl transcript 1 2622 . + . ID=Phyra87029;Parent=Phyra87029;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1476 . CDS 1 198 . + 0 ID=Phyra87029;Parent=Phyra87029;rank=1 scaffold_1476 . exon 1 198 . + . ID=Phyra87029.1;Parent=Phyra87029;constitutive=1;rank=1 scaffold_1476 . CDS 261 404 . + 0 ID=Phyra87029;Parent=Phyra87029;rank=2 scaffold_1476 . exon 261 404 . + . ID=Phyra87029.2;Parent=Phyra87029;constitutive=1;rank=2 scaffold_1476 . CDS 475 1854 . + 0 ID=Phyra87029;Parent=Phyra87029;rank=3 scaffold_1476 . exon 475 1854 . + . ID=Phyra87029.3;Parent=Phyra87029;constitutive=1;rank=3 scaffold_1476 . CDS 1987 2022 . + 0 ID=Phyra87029;Parent=Phyra87029;rank=4 scaffold_1476 . exon 1987 2022 . + . ID=Phyra87029.4;Parent=Phyra87029;constitutive=1;rank=4 scaffold_1476 . CDS 2098 2164 . + 0 ID=Phyra87029;Parent=Phyra87029;rank=5 scaffold_1476 . exon 2098 2164 . + . ID=Phyra87029.5;Parent=Phyra87029;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1476 . CDS 2240 2622 . + 0 ID=Phyra87029;Parent=Phyra87029;rank=6 scaffold_1476 . exon 2240 2622 . + . ID=Phyra87029.6;Parent=Phyra87029;constitutive=1;ensembl_phase=1;rank=6 scaffold_1476 ensembl protein_coding_gene 3385 4288 . - . ID=Phyra87030;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1476000002;logic_name=jgi_phyra1 scaffold_1476 ensembl transcript 3385 4288 . - . ID=Phyra87030;Parent=Phyra87030;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1476 . CDS 3385 4048 . - 0 ID=Phyra87030;Parent=Phyra87030;rank=2 scaffold_1476 . exon 3385 4048 . - . ID=Phyra87030.2;Parent=Phyra87030;constitutive=1;ensembl_phase=2;rank=2 scaffold_1476 . CDS 4125 4288 . - 0 ID=Phyra87030;Parent=Phyra87030;rank=1 scaffold_1476 . exon 4125 4288 . - . ID=Phyra87030.1;Parent=Phyra87030;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1491 1 4541 scaffold_1491 . repeat_region 4 590 . + . description=GypsyPi-1c_I-int scaffold_1491 . repeat_region 845 1123 . + . description=GypsyPi-1c_I-int scaffold_1491 . repeat_region 1372 1381 . ? . description=dust scaffold_1491 ensembl protein_coding_gene 215 469 . + . ID=Phyra41948;biotype=protein_coding;external_name=gwEuk.1491.2.1;logic_name=jgi_phyra1 scaffold_1491 ensembl transcript 215 469 . + . ID=Phyra41948;Parent=Phyra41948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1491 . CDS 215 469 . + 0 ID=Phyra41948;Parent=Phyra41948;rank=1 scaffold_1491 . exon 215 469 . + . ID=Phyra41948.1;Parent=Phyra41948;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1497 1 4541 scaffold_1497 . biological_region 188 188 0.999 - . logic_name=eponine scaffold_1497 . repeat_region 1164 1553 . ? . description=dust scaffold_1497 . repeat_region 2774 2823 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1471 1 4551 scaffold_1471 . biological_region 213 215 0.999 - . logic_name=eponine scaffold_1471 . biological_region 288 290 0.999 + . logic_name=eponine scaffold_1471 . biological_region 308 309 0.999 - . logic_name=eponine scaffold_1471 . biological_region 340 343 0.999 - . logic_name=eponine scaffold_1471 . repeat_region 1661 1871 . ? . description=dust scaffold_1471 . repeat_region 2515 2577 . ? . description=trf scaffold_1471 . repeat_region 4417 4429 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1472 1 4555 scaffold_1472 . biological_region 884 888 0.999 + . logic_name=eponine scaffold_1472 . biological_region 1160 1162 0.999 + . logic_name=eponine scaffold_1472 . repeat_region 1589 2480 . ? . description=dust scaffold_1472 . repeat_region 4117 4155 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1510 1 4556 scaffold_1510 . biological_region 628 630 0.999 + . logic_name=eponine scaffold_1510 . repeat_region 2303 2877 . ? . description=dust scaffold_1510 ensembl protein_coding_gene 2985 4501 . - . ID=Phyra42172;biotype=protein_coding;external_name=gwEuk.1510.2.1;logic_name=jgi_phyra1 scaffold_1510 ensembl transcript 2985 4501 . - . ID=Phyra42172;Parent=Phyra42172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1510 . CDS 2985 3634 . - 0 ID=Phyra42172;Parent=Phyra42172;rank=3 scaffold_1510 . exon 2985 3634 . - . ID=Phyra42172.3;Parent=Phyra42172;constitutive=1;ensembl_phase=1;rank=3 scaffold_1510 . CDS 3686 3899 . - 0 ID=Phyra42172;Parent=Phyra42172;rank=2 scaffold_1510 . exon 3686 3899 . - . ID=Phyra42172.2;Parent=Phyra42172;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1510 . CDS 3911 4501 . - 0 ID=Phyra42172;Parent=Phyra42172;rank=1 scaffold_1510 . exon 3911 4501 . - . ID=Phyra42172.1;Parent=Phyra42172;constitutive=1;rank=1 scaffold_1510 ensembl protein_coding_gene 117 1290 . - . ID=Phyra87054;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1510000001;logic_name=jgi_phyra1 scaffold_1510 ensembl transcript 117 1290 . - . ID=Phyra87054;Parent=Phyra87054;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1510 . CDS 117 314 . - 0 ID=Phyra87054;Parent=Phyra87054;rank=3 scaffold_1510 . exon 117 314 . - . ID=Phyra87054.3;Parent=Phyra87054;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1510 . CDS 339 356 . - 0 ID=Phyra87054;Parent=Phyra87054;rank=2 scaffold_1510 . exon 339 356 . - . ID=Phyra87054.2;Parent=Phyra87054;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1510 . CDS 411 1290 . - 0 ID=Phyra87054;Parent=Phyra87054;rank=1 scaffold_1510 . exon 411 1290 . - . ID=Phyra87054.1;Parent=Phyra87054;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1470 1 4558 scaffold_1470 . repeat_region 15 25 . ? . description=dust scaffold_1470 . biological_region 2014 2017 0.999 + . logic_name=eponine scaffold_1470 . biological_region 3474 3475 0.999 - . logic_name=eponine scaffold_1470 . biological_region 3528 3532 0.999 + . logic_name=eponine scaffold_1470 . biological_region 3575 3575 0.999 - . logic_name=eponine scaffold_1470 . biological_region 3581 3582 0.999 + . logic_name=eponine scaffold_1470 . biological_region 3595 3596 0.999 - . logic_name=eponine scaffold_1470 . biological_region 3647 3655 0.999 + . logic_name=eponine scaffold_1470 . biological_region 3703 3705 0.999 + . logic_name=eponine scaffold_1470 . repeat_region 4173 4558 . + . description=GypsyPi-1c_I-int scaffold_1470 ensembl protein_coding_gene 3888 4364 . + . ID=Phyra87025;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1470000001;logic_name=jgi_phyra1 scaffold_1470 ensembl transcript 3888 4364 . + . ID=Phyra87025;Parent=Phyra87025;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1470 . CDS 3888 4364 . + 0 ID=Phyra87025;Parent=Phyra87025;rank=1 scaffold_1470 . exon 3888 4364 . + . ID=Phyra87025.1;Parent=Phyra87025;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1469 1 4567 scaffold_1469 . biological_region 211 217 0.999 + . logic_name=eponine scaffold_1469 . repeat_region 1183 1316 . ? . description=trf scaffold_1469 . repeat_region 1188 1215 . ? . description=trf scaffold_1469 . biological_region 3122 3126 0.999 + . logic_name=eponine scaffold_1469 . biological_region 3186 3190 0.999 - . logic_name=eponine scaffold_1469 . biological_region 4311 4316 0.999 + . logic_name=eponine scaffold_1469 . biological_region 4448 4450 0.999 - . logic_name=eponine scaffold_1469 ensembl protein_coding_gene 1951 4550 . + . ID=Phyra87024;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1469000001;logic_name=jgi_phyra1 scaffold_1469 ensembl transcript 1951 4550 . + . ID=Phyra87024;Parent=Phyra87024;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1469 . CDS 1951 2109 . + 0 ID=Phyra87024;Parent=Phyra87024;rank=1 scaffold_1469 . exon 1951 2109 . + . ID=Phyra87024.1;Parent=Phyra87024;constitutive=1;rank=1 scaffold_1469 . CDS 2367 2591 . + 0 ID=Phyra87024;Parent=Phyra87024;rank=2 scaffold_1469 . exon 2367 2591 . + . ID=Phyra87024.2;Parent=Phyra87024;constitutive=1;rank=2 scaffold_1469 . CDS 2737 2838 . + 0 ID=Phyra87024;Parent=Phyra87024;rank=3 scaffold_1469 . exon 2737 2838 . + . ID=Phyra87024.3;Parent=Phyra87024;constitutive=1;rank=3 scaffold_1469 . CDS 3035 4550 . + 0 ID=Phyra87024;Parent=Phyra87024;rank=4 scaffold_1469 . exon 3035 4550 . + . ID=Phyra87024.4;Parent=Phyra87024;constitutive=1;ensembl_end_phase=1;rank=4 ##gff-version 3 ##sequence-region scaffold_1466 1 4575 scaffold_1466 . repeat_region 250 1589 . - . description=GypsyPi-1c_I-int scaffold_1466 . biological_region 1391 1393 0.999 - . logic_name=eponine scaffold_1466 . repeat_region 1628 3034 . ? . description=dust scaffold_1466 . biological_region 3208 3215 0.999 - . logic_name=eponine scaffold_1466 ensembl protein_coding_gene 691 1467 . - . ID=Phyra87022;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1466000001;logic_name=jgi_phyra1 scaffold_1466 ensembl transcript 691 1467 . - . ID=Phyra87022;Parent=Phyra87022;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1466 . CDS 691 1467 . - 0 ID=Phyra87022;Parent=Phyra87022;rank=1 scaffold_1466 . exon 691 1467 . - . ID=Phyra87022.1;Parent=Phyra87022;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1467 1 4575 scaffold_1467 . repeat_region 1490 2697 . ? . description=dust scaffold_1467 . repeat_region 3847 3888 . ? . description=trf scaffold_1467 . repeat_region 3889 3930 . ? . description=trf scaffold_1467 ensembl protein_coding_gene 10 3752 . + . ID=Phyra87023;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1467000001;logic_name=jgi_phyra1 scaffold_1467 ensembl transcript 10 3752 . + . ID=Phyra87023;Parent=Phyra87023;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1467 . CDS 10 1464 . + 0 ID=Phyra87023;Parent=Phyra87023;rank=1 scaffold_1467 . exon 10 1464 . + . ID=Phyra87023.1;Parent=Phyra87023;constitutive=1;rank=1 scaffold_1467 . CDS 2757 3387 . + 0 ID=Phyra87023;Parent=Phyra87023;rank=2 scaffold_1467 . exon 2757 3387 . + . ID=Phyra87023.2;Parent=Phyra87023;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1467 . CDS 3412 3752 . + 0 ID=Phyra87023;Parent=Phyra87023;rank=3 scaffold_1467 . exon 3412 3752 . + . ID=Phyra87023.3;Parent=Phyra87023;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1392 1 4582 scaffold_1392 . repeat_region 2244 2290 . ? . description=trf scaffold_1392 . repeat_region 3196 3272 . ? . description=trf scaffold_1392 . repeat_region 3750 3785 . ? . description=trf scaffold_1392 ensembl protein_coding_gene 3524 4339 . + . ID=Phyra86936;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1392000001;logic_name=jgi_phyra1 scaffold_1392 ensembl transcript 3524 4339 . + . ID=Phyra86936;Parent=Phyra86936;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1392 . CDS 3524 4339 . + 0 ID=Phyra86936;Parent=Phyra86936;rank=1 scaffold_1392 . exon 3524 4339 . + . ID=Phyra86936.1;Parent=Phyra86936;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1464 1 4582 scaffold_1464 . biological_region 117 120 0.999 - . logic_name=eponine scaffold_1464 . repeat_region 394 407 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1460 1 4590 scaffold_1460 . biological_region 981 985 0.999 + . logic_name=eponine scaffold_1460 . repeat_region 2552 2712 . ? . description=dust scaffold_1460 ensembl protein_coding_gene 320 1273 . - . ID=Phyra87015;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1460000001;logic_name=jgi_phyra1 scaffold_1460 ensembl transcript 320 1273 . - . ID=Phyra87015;Parent=Phyra87015;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1460 . CDS 320 682 . - 0 ID=Phyra87015;Parent=Phyra87015;rank=2 scaffold_1460 . exon 320 682 . - . ID=Phyra87015.2;Parent=Phyra87015;constitutive=1;rank=2 scaffold_1460 . CDS 896 1273 . - 0 ID=Phyra87015;Parent=Phyra87015;rank=1 scaffold_1460 . exon 896 1273 . - . ID=Phyra87015.1;Parent=Phyra87015;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1459 1 4598 scaffold_1459 . repeat_region 2810 3096 . ? . description=dust scaffold_1459 . biological_region 3608 3613 0.999 + . logic_name=eponine scaffold_1459 . biological_region 3670 3674 0.999 - . logic_name=eponine scaffold_1459 ensembl protein_coding_gene 238 3731 . - . ID=Phyra87014;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1459000001;logic_name=jgi_phyra1 scaffold_1459 ensembl transcript 238 3731 . - . ID=Phyra87014;Parent=Phyra87014;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1459 . CDS 238 323 . - 0 ID=Phyra87014;Parent=Phyra87014;rank=9 scaffold_1459 . exon 238 323 . - . ID=Phyra87014.9;Parent=Phyra87014;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_1459 . CDS 396 824 . - 0 ID=Phyra87014;Parent=Phyra87014;rank=8 scaffold_1459 . exon 396 824 . - . ID=Phyra87014.8;Parent=Phyra87014;constitutive=1;rank=8 scaffold_1459 . CDS 891 1214 . - 0 ID=Phyra87014;Parent=Phyra87014;rank=7 scaffold_1459 . exon 891 1214 . - . ID=Phyra87014.7;Parent=Phyra87014;constitutive=1;rank=7 scaffold_1459 . CDS 1282 1434 . - 0 ID=Phyra87014;Parent=Phyra87014;rank=6 scaffold_1459 . exon 1282 1434 . - . ID=Phyra87014.6;Parent=Phyra87014;constitutive=1;rank=6 scaffold_1459 . CDS 1509 1640 . - 0 ID=Phyra87014;Parent=Phyra87014;rank=5 scaffold_1459 . exon 1509 1640 . - . ID=Phyra87014.5;Parent=Phyra87014;constitutive=1;rank=5 scaffold_1459 . CDS 1717 2148 . - 0 ID=Phyra87014;Parent=Phyra87014;rank=4 scaffold_1459 . exon 1717 2148 . - . ID=Phyra87014.4;Parent=Phyra87014;constitutive=1;rank=4 scaffold_1459 . CDS 2223 2422 . - 0 ID=Phyra87014;Parent=Phyra87014;rank=3 scaffold_1459 . exon 2223 2422 . - . ID=Phyra87014.3;Parent=Phyra87014;constitutive=1;ensembl_phase=1;rank=3 scaffold_1459 . CDS 2496 2772 . - 0 ID=Phyra87014;Parent=Phyra87014;rank=2 scaffold_1459 . exon 2496 2772 . - . ID=Phyra87014.2;Parent=Phyra87014;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1459 . CDS 3099 3731 . - 0 ID=Phyra87014;Parent=Phyra87014;rank=1 scaffold_1459 . exon 3099 3731 . - . ID=Phyra87014.1;Parent=Phyra87014;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1458 1 4600 scaffold_1458 . repeat_region 1982 2028 . ? . description=trf scaffold_1458 . repeat_region 2206 3024 . ? . description=dust scaffold_1458 . repeat_region 3945 3969 . ? . description=trf scaffold_1458 ensembl protein_coding_gene 594 1811 . + . ID=Phyra87012;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1458000001;logic_name=jgi_phyra1 scaffold_1458 ensembl transcript 594 1811 . + . ID=Phyra87012;Parent=Phyra87012;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1458 . CDS 594 1811 . + 0 ID=Phyra87012;Parent=Phyra87012;rank=1 scaffold_1458 . exon 594 1811 . + . ID=Phyra87012.1;Parent=Phyra87012;constitutive=1;rank=1 scaffold_1458 ensembl protein_coding_gene 3054 4592 . + . ID=Phyra87013;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1458000002;logic_name=jgi_phyra1 scaffold_1458 ensembl transcript 3054 4592 . + . ID=Phyra87013;Parent=Phyra87013;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1458 . CDS 3054 4592 . + 0 ID=Phyra87013;Parent=Phyra87013;rank=1 scaffold_1458 . exon 3054 4592 . + . ID=Phyra87013.1;Parent=Phyra87013;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1474 1 4603 scaffold_1474 . biological_region 430 431 0.999 - . logic_name=eponine scaffold_1474 . biological_region 589 590 0.999 + . logic_name=eponine scaffold_1474 . repeat_region 891 2375 . ? . description=dust scaffold_1474 . biological_region 4575 4580 0.999 - . logic_name=eponine scaffold_1474 ensembl protein_coding_gene 3624 4593 . + . ID=Phyra87027;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1474000001;logic_name=jgi_phyra1 scaffold_1474 ensembl transcript 3624 4593 . + . ID=Phyra87027;Parent=Phyra87027;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1474 . CDS 3624 3651 . + 0 ID=Phyra87027;Parent=Phyra87027;rank=1 scaffold_1474 . exon 3624 3651 . + . ID=Phyra87027.1;Parent=Phyra87027;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1474 . CDS 3992 4593 . + 0 ID=Phyra87027;Parent=Phyra87027;rank=2 scaffold_1474 . exon 3992 4593 . + . ID=Phyra87027.2;Parent=Phyra87027;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1385 1 4621 scaffold_1385 . repeat_region 245 935 . + . description=GypsyPi-1c_I-int scaffold_1385 . repeat_region 1310 1531 . + . description=GypsyPi-1c_I-int scaffold_1385 . biological_region 1605 1607 0.999 - . logic_name=eponine scaffold_1385 . repeat_region 1784 1800 . ? . description=dust scaffold_1385 . biological_region 2489 2491 0.999 + . logic_name=eponine scaffold_1385 . repeat_region 3627 4621 . - . description=GypsyPi-1c_I-int scaffold_1385 ensembl protein_coding_gene 623 877 . + . ID=Phyra41432;biotype=protein_coding;external_name=gwEuk.1385.4.1;logic_name=jgi_phyra1 scaffold_1385 ensembl transcript 623 877 . + . ID=Phyra41432;Parent=Phyra41432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1385 . CDS 623 877 . + 0 ID=Phyra41432;Parent=Phyra41432;rank=1 scaffold_1385 . exon 623 877 . + . ID=Phyra41432.1;Parent=Phyra41432;constitutive=1;rank=1 scaffold_1385 ensembl protein_coding_gene 1548 3151 . - . ID=Phyra86926;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1385000001;logic_name=jgi_phyra1 scaffold_1385 ensembl transcript 1548 3151 . - . ID=Phyra86926;Parent=Phyra86926;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1385 . CDS 1548 1714 . - 0 ID=Phyra86926;Parent=Phyra86926;rank=4 scaffold_1385 . exon 1548 1714 . - . ID=Phyra86926.4;Parent=Phyra86926;constitutive=1;ensembl_phase=1;rank=4 scaffold_1385 . CDS 1978 2175 . - 0 ID=Phyra86926;Parent=Phyra86926;rank=3 scaffold_1385 . exon 1978 2175 . - . ID=Phyra86926.3;Parent=Phyra86926;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1385 . CDS 2200 2217 . - 0 ID=Phyra86926;Parent=Phyra86926;rank=2 scaffold_1385 . exon 2200 2217 . - . ID=Phyra86926.2;Parent=Phyra86926;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1385 . CDS 2272 3151 . - 0 ID=Phyra86926;Parent=Phyra86926;rank=1 scaffold_1385 . exon 2272 3151 . - . ID=Phyra86926.1;Parent=Phyra86926;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1385 ensembl protein_coding_gene 4177 4599 . - . ID=Phyra86927;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1385000002;logic_name=jgi_phyra1 scaffold_1385 ensembl transcript 4177 4599 . - . ID=Phyra86927;Parent=Phyra86927;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1385 . CDS 4177 4599 . - 0 ID=Phyra86927;Parent=Phyra86927;rank=1 scaffold_1385 . exon 4177 4599 . - . ID=Phyra86927.1;Parent=Phyra86927;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1427 1 4621 scaffold_1427 ensembl protein_coding_gene 270 1391 . - . ID=Phyra86981;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1427000001;logic_name=jgi_phyra1 scaffold_1427 ensembl transcript 270 1391 . - . ID=Phyra86981;Parent=Phyra86981;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1427 . CDS 270 463 . - 0 ID=Phyra86981;Parent=Phyra86981;rank=2 scaffold_1427 . exon 270 463 . - . ID=Phyra86981.2;Parent=Phyra86981;constitutive=1;ensembl_phase=1;rank=2 scaffold_1427 . CDS 530 1391 . - 0 ID=Phyra86981;Parent=Phyra86981;rank=1 scaffold_1427 . exon 530 1391 . - . ID=Phyra86981.1;Parent=Phyra86981;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1427 ensembl protein_coding_gene 1951 2829 . - . ID=Phyra86982;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1427000002;logic_name=jgi_phyra1 scaffold_1427 ensembl transcript 1951 2829 . - . ID=Phyra86982;Parent=Phyra86982;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1427 . CDS 1951 2829 . - 0 ID=Phyra86982;Parent=Phyra86982;rank=1 scaffold_1427 . exon 1951 2829 . - . ID=Phyra86982.1;Parent=Phyra86982;constitutive=1;rank=1 scaffold_1427 ensembl protein_coding_gene 3256 4302 . - . ID=Phyra86983;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1427000003;logic_name=jgi_phyra1 scaffold_1427 ensembl transcript 3256 4302 . - . ID=Phyra86983;Parent=Phyra86983;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1427 . CDS 3256 4302 . - 0 ID=Phyra86983;Parent=Phyra86983;rank=1 scaffold_1427 . exon 3256 4302 . - . ID=Phyra86983.1;Parent=Phyra86983;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1457 1 4622 scaffold_1457 . biological_region 916 920 0.999 - . logic_name=eponine scaffold_1457 . biological_region 1162 1163 0.999 + . logic_name=eponine scaffold_1457 . repeat_region 1349 2511 . ? . description=dust scaffold_1457 . repeat_region 3018 3064 . ? . description=trf scaffold_1457 . repeat_region 3101 3210 . ? . description=trf scaffold_1457 . biological_region 3123 3127 0.999 + . logic_name=eponine scaffold_1457 . repeat_region 3125 3180 . ? . description=dust scaffold_1457 . repeat_region 3128 3183 . ? . description=trf scaffold_1457 . repeat_region 3138 3183 . ? . description=trf scaffold_1457 . repeat_region 3176 3270 . ? . description=trf scaffold_1457 . biological_region 3180 3184 0.999 - . logic_name=eponine scaffold_1457 . biological_region 3197 3197 0.999 - . logic_name=eponine scaffold_1457 . biological_region 3232 3238 0.999 - . logic_name=eponine scaffold_1457 ensembl protein_coding_gene 2681 4543 . - . ID=Phyra87011;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1457000001;logic_name=jgi_phyra1 scaffold_1457 ensembl transcript 2681 4543 . - . ID=Phyra87011;Parent=Phyra87011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1457 . CDS 2681 2806 . - 0 ID=Phyra87011;Parent=Phyra87011;rank=3 scaffold_1457 . exon 2681 2806 . - . ID=Phyra87011.3;Parent=Phyra87011;constitutive=1;rank=3 scaffold_1457 . CDS 2866 3821 . - 0 ID=Phyra87011;Parent=Phyra87011;rank=2 scaffold_1457 . exon 2866 3821 . - . ID=Phyra87011.2;Parent=Phyra87011;constitutive=1;ensembl_phase=1;rank=2 scaffold_1457 . CDS 3916 4543 . - 0 ID=Phyra87011;Parent=Phyra87011;rank=1 scaffold_1457 . exon 3916 4543 . - . ID=Phyra87011.1;Parent=Phyra87011;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1456 1 4629 scaffold_1456 . biological_region 359 361 0.999 + . logic_name=eponine scaffold_1456 . biological_region 392 392 0.999 + . logic_name=eponine scaffold_1456 . biological_region 425 429 0.999 + . logic_name=eponine scaffold_1456 . biological_region 491 497 0.999 - . logic_name=eponine scaffold_1456 . biological_region 521 524 0.999 - . logic_name=eponine scaffold_1456 . repeat_region 2238 3230 . ? . description=dust scaffold_1456 . biological_region 3687 3688 0.999 + . logic_name=eponine scaffold_1456 . biological_region 3962 3963 0.999 - . logic_name=eponine scaffold_1456 ensembl protein_coding_gene 4 419 . - . ID=Phyra87009;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1456000001;logic_name=jgi_phyra1 scaffold_1456 ensembl transcript 4 419 . - . ID=Phyra87009;Parent=Phyra87009;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1456 . CDS 4 419 . - 0 ID=Phyra87009;Parent=Phyra87009;rank=1 scaffold_1456 . exon 4 419 . - . ID=Phyra87009.1;Parent=Phyra87009;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1456 ensembl protein_coding_gene 3426 4301 . + . ID=Phyra87010;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1456000002;logic_name=jgi_phyra1 scaffold_1456 ensembl transcript 3426 4301 . + . ID=Phyra87010;Parent=Phyra87010;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1456 . CDS 3426 4301 . + 0 ID=Phyra87010;Parent=Phyra87010;rank=1 scaffold_1456 . exon 3426 4301 . + . ID=Phyra87010.1;Parent=Phyra87010;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1473 1 4639 scaffold_1473 . repeat_region 2196 3059 . ? . description=dust scaffold_1473 . repeat_region 3687 3713 . ? . description=dust scaffold_1473 . repeat_region 4126 4142 . ? . description=dust scaffold_1473 ensembl protein_coding_gene 3173 3547 . + . ID=Phyra41921;biotype=protein_coding;external_name=gwEuk.1473.1.1;logic_name=jgi_phyra1 scaffold_1473 ensembl transcript 3173 3547 . + . ID=Phyra41921;Parent=Phyra41921;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1473 . CDS 3173 3547 . + 0 ID=Phyra41921;Parent=Phyra41921;rank=1 scaffold_1473 . exon 3173 3547 . + . ID=Phyra41921.1;Parent=Phyra41921;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1454 1 4640 scaffold_1454 . biological_region 101 106 0.999 - . logic_name=eponine scaffold_1454 . repeat_region 2088 2293 . ? . description=dust scaffold_1454 . biological_region 2498 2506 0.999 + . logic_name=eponine scaffold_1454 . biological_region 2624 2627 0.999 + . logic_name=eponine scaffold_1454 . biological_region 2626 2630 0.999 - . logic_name=eponine scaffold_1454 . biological_region 3261 3264 0.999 - . logic_name=eponine scaffold_1454 . biological_region 3743 3744 0.999 + . logic_name=eponine scaffold_1454 ensembl pseudogene 1372 3363 . - . ID=Phyra41888;biotype=pseudogene;external_name=gwEuk.1454.3.1;logic_name=jgi_phyra1 scaffold_1454 ensembl pseudogene 1372 3363 . - . ID=Phyra41888;Parent=Phyra41888;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1454 . exon 1372 2073 . - . ID=Phyra41888.2;Parent=Phyra41888;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1454 . exon 2309 3363 . - . ID=Phyra41888.1;Parent=Phyra41888;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1454 ensembl protein_coding_gene 3743 4531 . + . ID=Phyra41894;biotype=protein_coding;external_name=gwEuk.1454.9.1;logic_name=jgi_phyra1 scaffold_1454 ensembl transcript 3743 4531 . + . ID=Phyra41894;Parent=Phyra41894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1454 . CDS 3743 4531 . + 0 ID=Phyra41894;Parent=Phyra41894;rank=1 scaffold_1454 . exon 3743 4531 . + . ID=Phyra41894.1;Parent=Phyra41894;constitutive=1;rank=1 scaffold_1454 ensembl protein_coding_gene 7 660 . - . ID=Phyra87005;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1454000001;logic_name=jgi_phyra1 scaffold_1454 ensembl transcript 7 660 . - . ID=Phyra87005;Parent=Phyra87005;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1454 . CDS 7 660 . - 0 ID=Phyra87005;Parent=Phyra87005;rank=1 scaffold_1454 . exon 7 660 . - . ID=Phyra87005.1;Parent=Phyra87005;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1453 1 4642 scaffold_1453 ensembl protein_coding_gene 1646 2038 . + . ID=Phyra87003;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1453000001;logic_name=jgi_phyra1 scaffold_1453 ensembl transcript 1646 2038 . + . ID=Phyra87003;Parent=Phyra87003;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1453 . CDS 1646 2038 . + 0 ID=Phyra87003;Parent=Phyra87003;rank=1 scaffold_1453 . exon 1646 2038 . + . ID=Phyra87003.1;Parent=Phyra87003;constitutive=1;rank=1 scaffold_1453 ensembl protein_coding_gene 3243 3737 . + . ID=Phyra87004;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1453000002;logic_name=jgi_phyra1 scaffold_1453 ensembl transcript 3243 3737 . + . ID=Phyra87004;Parent=Phyra87004;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1453 . CDS 3243 3314 . + 0 ID=Phyra87004;Parent=Phyra87004;rank=1 scaffold_1453 . exon 3243 3314 . + . ID=Phyra87004.1;Parent=Phyra87004;constitutive=1;rank=1 scaffold_1453 . CDS 3405 3737 . + 0 ID=Phyra87004;Parent=Phyra87004;rank=2 scaffold_1453 . exon 3405 3737 . + . ID=Phyra87004.2;Parent=Phyra87004;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1397 1 4656 scaffold_1397 . biological_region 492 493 0.999 + . logic_name=eponine scaffold_1397 . biological_region 816 819 0.999 + . logic_name=eponine scaffold_1397 . repeat_region 1774 1814 . ? . description=dust scaffold_1397 . repeat_region 1781 1814 . ? . description=trf scaffold_1397 . repeat_region 1784 1822 . ? . description=trf scaffold_1397 . repeat_region 2629 2636 . ? . description=dust scaffold_1397 ensembl protein_coding_gene 15 2220 . - . ID=Phyra86942;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1397000001;logic_name=jgi_phyra1 scaffold_1397 ensembl transcript 15 2220 . - . ID=Phyra86942;Parent=Phyra86942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1397 . CDS 15 2220 . - 0 ID=Phyra86942;Parent=Phyra86942;rank=1 scaffold_1397 . exon 15 2220 . - . ID=Phyra86942.1;Parent=Phyra86942;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1397 ensembl protein_coding_gene 3253 4494 . + . ID=Phyra86943;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1397000002;logic_name=jgi_phyra1 scaffold_1397 ensembl transcript 3253 4494 . + . ID=Phyra86943;Parent=Phyra86943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1397 . CDS 3253 4494 . + 0 ID=Phyra86943;Parent=Phyra86943;rank=1 scaffold_1397 . exon 3253 4494 . + . ID=Phyra86943.1;Parent=Phyra86943;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1447 1 4663 scaffold_1447 . repeat_region 3737 3745 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1448 1 4664 scaffold_1448 . biological_region 1687 1692 0.999 + . logic_name=eponine scaffold_1448 . repeat_region 2011 2477 . ? . description=dust scaffold_1448 . biological_region 3066 3066 0.999 + . logic_name=eponine scaffold_1448 . biological_region 3803 3804 0.999 + . logic_name=eponine scaffold_1448 . repeat_region 3879 3926 . ? . description=trf scaffold_1448 . repeat_region 3879 3926 . ? . description=dust scaffold_1448 . repeat_region 4151 4199 . ? . description=trf scaffold_1448 ensembl protein_coding_gene 1462 3896 . - . ID=Phyra87001;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1448000001;logic_name=jgi_phyra1 scaffold_1448 ensembl transcript 1462 3896 . - . ID=Phyra87001;Parent=Phyra87001;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1448 . CDS 1462 1985 . - 0 ID=Phyra87001;Parent=Phyra87001;rank=2 scaffold_1448 . exon 1462 1985 . - . ID=Phyra87001.2;Parent=Phyra87001;constitutive=1;ensembl_phase=1;rank=2 scaffold_1448 . CDS 2483 3896 . - 0 ID=Phyra87001;Parent=Phyra87001;rank=1 scaffold_1448 . exon 2483 3896 . - . ID=Phyra87001.1;Parent=Phyra87001;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1455 1 4669 scaffold_1455 . repeat_region 883 3033 . ? . description=dust scaffold_1455 . repeat_region 4302 4396 . ? . description=trf scaffold_1455 . repeat_region 4302 4396 . ? . description=trf scaffold_1455 ensembl protein_coding_gene 9 3286 . - . ID=Phyra87008;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1455000001;logic_name=jgi_phyra1 scaffold_1455 ensembl transcript 9 3286 . - . ID=Phyra87008;Parent=Phyra87008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1455 . CDS 9 866 . - 0 ID=Phyra87008;Parent=Phyra87008;rank=2 scaffold_1455 . exon 9 866 . - . ID=Phyra87008.2;Parent=Phyra87008;constitutive=1;rank=2 scaffold_1455 . CDS 3044 3286 . - 0 ID=Phyra87008;Parent=Phyra87008;rank=1 scaffold_1455 . exon 3044 3286 . - . ID=Phyra87008.1;Parent=Phyra87008;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1433 1 4679 scaffold_1433 . repeat_region 786 794 . ? . description=dust scaffold_1433 . repeat_region 1253 1541 . ? . description=dust scaffold_1433 . repeat_region 1772 1873 . + . description=Gypsy-1-LTR_PI scaffold_1433 . repeat_region 1902 4679 . + . description=Gypsy-2-I_PI-int scaffold_1433 ensembl protein_coding_gene 1939 2756 . + . ID=Phyra86989;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1433000001;logic_name=jgi_phyra1 scaffold_1433 ensembl transcript 1939 2756 . + . ID=Phyra86989;Parent=Phyra86989;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1433 . CDS 1939 2233 . + 0 ID=Phyra86989;Parent=Phyra86989;rank=1 scaffold_1433 . exon 1939 2233 . + . ID=Phyra86989.1;Parent=Phyra86989;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1433 . CDS 2416 2756 . + 0 ID=Phyra86989;Parent=Phyra86989;rank=2 scaffold_1433 . exon 2416 2756 . + . ID=Phyra86989.2;Parent=Phyra86989;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1462 1 4685 scaffold_1462 . repeat_region 3146 3242 . ? . description=dust scaffold_1462 . biological_region 3412 3417 0.999 - . logic_name=eponine scaffold_1462 . biological_region 3730 3733 0.999 + . logic_name=eponine scaffold_1462 . biological_region 3806 3806 0.999 + . logic_name=eponine scaffold_1462 . biological_region 3960 3962 0.999 + . logic_name=eponine scaffold_1462 ensembl protein_coding_gene 1596 2093 . + . ID=Phyra41915;biotype=protein_coding;external_name=gwEuk.1462.5.1;logic_name=jgi_phyra1 scaffold_1462 ensembl transcript 1596 2093 . + . ID=Phyra41915;Parent=Phyra41915;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1462 . CDS 1596 2093 . + 0 ID=Phyra41915;Parent=Phyra41915;rank=1 scaffold_1462 . exon 1596 2093 . + . ID=Phyra41915.1;Parent=Phyra41915;constitutive=1;rank=1 scaffold_1462 ensembl protein_coding_gene 3244 4507 . - . ID=Phyra41916;biotype=protein_coding;external_name=gwEuk.1462.6.1;logic_name=jgi_phyra1 scaffold_1462 ensembl transcript 3244 4507 . - . ID=Phyra41916;Parent=Phyra41916;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1462 . CDS 3244 4185 . - 0 ID=Phyra41916;Parent=Phyra41916;rank=2 scaffold_1462 . exon 3244 4185 . - . ID=Phyra41916.2;Parent=Phyra41916;constitutive=1;rank=2 scaffold_1462 . CDS 4283 4507 . - 0 ID=Phyra41916;Parent=Phyra41916;rank=1 scaffold_1462 . exon 4283 4507 . - . ID=Phyra41916.1;Parent=Phyra41916;constitutive=1;rank=1 scaffold_1462 ensembl protein_coding_gene 54 1449 . + . ID=Phyra87018;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1462000001;logic_name=jgi_phyra1 scaffold_1462 ensembl transcript 54 1449 . + . ID=Phyra87018;Parent=Phyra87018;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1462 . CDS 54 1376 . + 0 ID=Phyra87018;Parent=Phyra87018;rank=1 scaffold_1462 . exon 54 1376 . + . ID=Phyra87018.1;Parent=Phyra87018;constitutive=1;rank=1 scaffold_1462 . CDS 1411 1449 . + 0 ID=Phyra87018;Parent=Phyra87018;rank=2 scaffold_1462 . exon 1411 1449 . + . ID=Phyra87018.2;Parent=Phyra87018;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1446 1 4691 scaffold_1446 . biological_region 483 483 0.999 + . logic_name=eponine scaffold_1446 . biological_region 567 569 0.999 - . logic_name=eponine scaffold_1446 . biological_region 618 624 0.999 - . logic_name=eponine scaffold_1446 . biological_region 659 660 0.999 + . logic_name=eponine scaffold_1446 . biological_region 697 697 0.999 + . logic_name=eponine scaffold_1446 . biological_region 721 726 0.999 - . logic_name=eponine scaffold_1446 . biological_region 773 777 0.999 - . logic_name=eponine scaffold_1446 . biological_region 2287 2291 0.999 - . logic_name=eponine scaffold_1446 . biological_region 3376 3379 0.999 - . logic_name=eponine scaffold_1446 . repeat_region 3452 3461 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1386 1 4694 scaffold_1386 . biological_region 185 186 0.999 - . logic_name=eponine scaffold_1386 . repeat_region 1208 1734 . ? . description=dust scaffold_1386 . biological_region 2005 2006 0.999 - . logic_name=eponine scaffold_1386 . repeat_region 2064 2096 . ? . description=trf scaffold_1386 . repeat_region 3652 3699 . ? . description=trf scaffold_1386 . repeat_region 3752 3774 . ? . description=trf scaffold_1386 ensembl protein_coding_gene 2480 2981 . + . ID=Phyra41433;biotype=protein_coding;external_name=gwEuk.1386.1.1;logic_name=jgi_phyra1 scaffold_1386 ensembl transcript 2480 2981 . + . ID=Phyra41433;Parent=Phyra41433;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1386 . CDS 2480 2776 . + 0 ID=Phyra41433;Parent=Phyra41433;rank=1 scaffold_1386 . exon 2480 2776 . + . ID=Phyra41433.1;Parent=Phyra41433;constitutive=1;rank=1 scaffold_1386 . CDS 2856 2981 . + 0 ID=Phyra41433;Parent=Phyra41433;rank=2 scaffold_1386 . exon 2856 2981 . + . ID=Phyra41433.2;Parent=Phyra41433;constitutive=1;rank=2 scaffold_1386 ensembl protein_coding_gene 49 1074 . - . ID=Phyra41436;biotype=protein_coding;external_name=gwEuk.1386.4.1;logic_name=jgi_phyra1 scaffold_1386 ensembl transcript 49 1074 . - . ID=Phyra41436;Parent=Phyra41436;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1386 . CDS 49 1074 . - 0 ID=Phyra41436;Parent=Phyra41436;rank=1 scaffold_1386 . exon 49 1074 . - . ID=Phyra41436.1;Parent=Phyra41436;constitutive=1;rank=1 scaffold_1386 ensembl protein_coding_gene 3352 3930 . - . ID=Phyra86930;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1386000003;logic_name=jgi_phyra1 scaffold_1386 ensembl transcript 3352 3930 . - . ID=Phyra86930;Parent=Phyra86930;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1386 . CDS 3352 3930 . - 0 ID=Phyra86930;Parent=Phyra86930;rank=1 scaffold_1386 . exon 3352 3930 . - . ID=Phyra86930.1;Parent=Phyra86930;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1445 1 4695 scaffold_1445 . biological_region 2072 2075 0.999 - . logic_name=eponine scaffold_1445 . repeat_region 2144 3152 . ? . description=dust scaffold_1445 ensembl protein_coding_gene 1144 2001 . - . ID=Phyra87000;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1445000001;logic_name=jgi_phyra1 scaffold_1445 ensembl transcript 1144 2001 . - . ID=Phyra87000;Parent=Phyra87000;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1445 . CDS 1144 2001 . - 0 ID=Phyra87000;Parent=Phyra87000;rank=1 scaffold_1445 . exon 1144 2001 . - . ID=Phyra87000.1;Parent=Phyra87000;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1449 1 4699 scaffold_1449 . repeat_region 2 2141 . - . description=Polinton-1_PI scaffold_1449 . repeat_region 2142 2191 . ? . description=dust scaffold_1449 . repeat_region 2193 3718 . - . description=Polinton-1_PI scaffold_1449 . repeat_region 3044 3051 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1443 1 4705 scaffold_1443 . biological_region 1358 1363 0.999 + . logic_name=eponine scaffold_1443 . repeat_region 1614 2546 . ? . description=dust scaffold_1443 . biological_region 2976 2979 0.999 + . logic_name=eponine scaffold_1443 . biological_region 3134 3135 0.999 + . logic_name=eponine scaffold_1443 . biological_region 3229 3233 0.999 - . logic_name=eponine scaffold_1443 . biological_region 3360 3361 0.999 - . logic_name=eponine scaffold_1443 . biological_region 3471 3472 0.999 + . logic_name=eponine scaffold_1443 . biological_region 3522 3526 0.999 - . logic_name=eponine scaffold_1443 . biological_region 3582 3582 0.999 - . logic_name=eponine scaffold_1443 . biological_region 3616 3619 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1444 1 4706 scaffold_1444 . biological_region 2715 2719 0.999 - . logic_name=eponine scaffold_1444 . biological_region 2772 2775 0.999 + . logic_name=eponine scaffold_1444 . biological_region 3688 3689 0.999 - . logic_name=eponine scaffold_1444 . repeat_region 3889 3932 . ? . description=trf scaffold_1444 ensembl protein_coding_gene 1183 3614 . - . ID=Phyra86999;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1444000001;logic_name=jgi_phyra1 scaffold_1444 ensembl transcript 1183 3614 . - . ID=Phyra86999;Parent=Phyra86999;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1444 . CDS 1183 1214 . - 0 ID=Phyra86999;Parent=Phyra86999;rank=6 scaffold_1444 . exon 1183 1214 . - . ID=Phyra86999.6;Parent=Phyra86999;constitutive=1;ensembl_phase=1;rank=6 scaffold_1444 . CDS 1238 1418 . - 0 ID=Phyra86999;Parent=Phyra86999;rank=5 scaffold_1444 . exon 1238 1418 . - . ID=Phyra86999.5;Parent=Phyra86999;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1444 . CDS 1689 2966 . - 0 ID=Phyra86999;Parent=Phyra86999;rank=4 scaffold_1444 . exon 1689 2966 . - . ID=Phyra86999.4;Parent=Phyra86999;constitutive=1;rank=4 scaffold_1444 . CDS 3053 3343 . - 0 ID=Phyra86999;Parent=Phyra86999;rank=3 scaffold_1444 . exon 3053 3343 . - . ID=Phyra86999.3;Parent=Phyra86999;constitutive=1;rank=3 scaffold_1444 . CDS 3427 3451 . - 0 ID=Phyra86999;Parent=Phyra86999;rank=2 scaffold_1444 . exon 3427 3451 . - . ID=Phyra86999.2;Parent=Phyra86999;constitutive=1;ensembl_phase=2;rank=2 scaffold_1444 . CDS 3541 3614 . - 0 ID=Phyra86999;Parent=Phyra86999;rank=1 scaffold_1444 . exon 3541 3614 . - . ID=Phyra86999.1;Parent=Phyra86999;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1442 1 4716 scaffold_1442 . repeat_region 718 737 . ? . description=trf scaffold_1442 . repeat_region 718 737 . ? . description=dust scaffold_1442 . repeat_region 1125 1229 . ? . description=trf scaffold_1442 . repeat_region 1140 1200 . ? . description=trf scaffold_1442 . repeat_region 2858 3062 . ? . description=dust scaffold_1442 ensembl protein_coding_gene 1092 2093 . + . ID=Phyra86998;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1442000001;logic_name=jgi_phyra1 scaffold_1442 ensembl transcript 1092 2093 . + . ID=Phyra86998;Parent=Phyra86998;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1442 . CDS 1092 2093 . + 0 ID=Phyra86998;Parent=Phyra86998;rank=1 scaffold_1442 . exon 1092 2093 . + . ID=Phyra86998.1;Parent=Phyra86998;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1441 1 4726 scaffold_1441 . repeat_region 2142 2163 . ? . description=trf scaffold_1441 . repeat_region 2787 3087 . ? . description=dust scaffold_1441 . biological_region 3492 3494 0.999 + . logic_name=eponine scaffold_1441 . biological_region 4436 4438 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1490 1 4728 scaffold_1490 . repeat_region 2085 2483 . ? . description=dust scaffold_1490 . repeat_region 2593 2609 . ? . description=dust scaffold_1490 . repeat_region 3287 3511 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1438 1 4731 scaffold_1438 . biological_region 479 482 0.999 - . logic_name=eponine scaffold_1438 . biological_region 504 506 0.999 - . logic_name=eponine scaffold_1438 . biological_region 1787 1791 0.999 - . logic_name=eponine scaffold_1438 . repeat_region 2442 2461 . ? . description=trf scaffold_1438 . repeat_region 3501 3579 . ? . description=trf scaffold_1438 . repeat_region 3501 3584 . ? . description=dust scaffold_1438 . repeat_region 3501 3585 . ? . description=trf scaffold_1438 . repeat_region 3511 3585 . ? . description=trf scaffold_1438 . repeat_region 3511 3585 . ? . description=trf scaffold_1438 . biological_region 3729 3734 0.999 - . logic_name=eponine scaffold_1438 ensembl protein_coding_gene 5 3052 . - . ID=Phyra86994;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1438000001;logic_name=jgi_phyra1 scaffold_1438 ensembl transcript 5 3052 . - . ID=Phyra86994;Parent=Phyra86994;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1438 . CDS 5 2674 . - 0 ID=Phyra86994;Parent=Phyra86994;rank=3 scaffold_1438 . exon 5 2674 . - . ID=Phyra86994.3;Parent=Phyra86994;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1438 . CDS 2744 2820 . - 0 ID=Phyra86994;Parent=Phyra86994;rank=2 scaffold_1438 . exon 2744 2820 . - . ID=Phyra86994.2;Parent=Phyra86994;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1438 . CDS 2892 3052 . - 0 ID=Phyra86994;Parent=Phyra86994;rank=1 scaffold_1438 . exon 2892 3052 . - . ID=Phyra86994.1;Parent=Phyra86994;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1438 ensembl protein_coding_gene 3373 3960 . - . ID=Phyra86995;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1438000002;logic_name=jgi_phyra1 scaffold_1438 ensembl transcript 3373 3960 . - . ID=Phyra86995;Parent=Phyra86995;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1438 . CDS 3373 3960 . - 0 ID=Phyra86995;Parent=Phyra86995;rank=1 scaffold_1438 . exon 3373 3960 . - . ID=Phyra86995.1;Parent=Phyra86995;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1437 1 4737 scaffold_1437 . repeat_region 1324 2073 . ? . description=dust scaffold_1437 . biological_region 2769 2772 0.999 + . logic_name=eponine scaffold_1437 . biological_region 4475 4479 0.999 - . logic_name=eponine scaffold_1437 ensembl protein_coding_gene 2669 4694 . - . ID=Phyra86993;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1437000001;logic_name=jgi_phyra1 scaffold_1437 ensembl transcript 2669 4694 . - . ID=Phyra86993;Parent=Phyra86993;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1437 . CDS 2669 3480 . - 0 ID=Phyra86993;Parent=Phyra86993;rank=4 scaffold_1437 . exon 2669 3480 . - . ID=Phyra86993.4;Parent=Phyra86993;constitutive=1;ensembl_phase=1;rank=4 scaffold_1437 . CDS 3509 3737 . - 0 ID=Phyra86993;Parent=Phyra86993;rank=3 scaffold_1437 . exon 3509 3737 . - . ID=Phyra86993.3;Parent=Phyra86993;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1437 . CDS 3779 4042 . - 0 ID=Phyra86993;Parent=Phyra86993;rank=2 scaffold_1437 . exon 3779 4042 . - . ID=Phyra86993.2;Parent=Phyra86993;constitutive=1;rank=2 scaffold_1437 . CDS 4519 4692 . - 0 ID=Phyra86993;Parent=Phyra86993;rank=1 scaffold_1437 . exon 4519 4694 . - . ID=Phyra86993.1;Parent=Phyra86993;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1434 1 4747 scaffold_1434 . repeat_region 217 364 . ? . description=trf scaffold_1434 . repeat_region 1228 2280 . ? . description=dust scaffold_1434 . repeat_region 2283 3034 . + . description=Gypsy-2-I_PI-int ##gff-version 3 ##sequence-region scaffold_1452 1 4754 scaffold_1452 . repeat_region 2183 2191 . ? . description=dust scaffold_1452 . repeat_region 2211 2225 . ? . description=dust scaffold_1452 . repeat_region 2306 2611 . ? . description=dust scaffold_1452 . repeat_region 3684 3713 . ? . description=trf scaffold_1452 . repeat_region 3903 3918 . ? . description=dust scaffold_1452 . repeat_region 4042 4049 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1546 1 4774 scaffold_1546 . repeat_region 840 848 . ? . description=dust scaffold_1546 . repeat_region 1553 3052 . ? . description=dust scaffold_1546 . repeat_region 4765 4774 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1432 1 4775 scaffold_1432 . biological_region 549 554 0.999 + . logic_name=eponine scaffold_1432 . repeat_region 655 702 . ? . description=trf scaffold_1432 . repeat_region 655 702 . ? . description=trf scaffold_1432 . repeat_region 3681 3762 . ? . description=trf scaffold_1432 . repeat_region 3682 3762 . ? . description=trf scaffold_1432 . repeat_region 3690 3762 . ? . description=trf scaffold_1432 . repeat_region 3693 3762 . ? . description=trf scaffold_1432 ensembl protein_coding_gene 3309 4365 . - . ID=Phyra86988;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1432000001;logic_name=jgi_phyra1 scaffold_1432 ensembl transcript 3309 4365 . - . ID=Phyra86988;Parent=Phyra86988;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1432 . CDS 3309 3481 . - 0 ID=Phyra86988;Parent=Phyra86988;rank=6 scaffold_1432 . exon 3309 3481 . - . ID=Phyra86988.6;Parent=Phyra86988;constitutive=1;ensembl_phase=1;rank=6 scaffold_1432 . CDS 3583 3611 . - 0 ID=Phyra86988;Parent=Phyra86988;rank=5 scaffold_1432 . exon 3583 3611 . - . ID=Phyra86988.5;Parent=Phyra86988;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_1432 . CDS 3671 3804 . - 0 ID=Phyra86988;Parent=Phyra86988;rank=4 scaffold_1432 . exon 3671 3804 . - . ID=Phyra86988.4;Parent=Phyra86988;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1432 . CDS 3937 3988 . - 0 ID=Phyra86988;Parent=Phyra86988;rank=3 scaffold_1432 . exon 3937 3988 . - . ID=Phyra86988.3;Parent=Phyra86988;constitutive=1;ensembl_phase=2;rank=3 scaffold_1432 . CDS 4015 4118 . - 0 ID=Phyra86988;Parent=Phyra86988;rank=2 scaffold_1432 . exon 4015 4118 . - . ID=Phyra86988.2;Parent=Phyra86988;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1432 . CDS 4336 4365 . - 0 ID=Phyra86988;Parent=Phyra86988;rank=1 scaffold_1432 . exon 4336 4365 . - . ID=Phyra86988.1;Parent=Phyra86988;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1431 1 4777 scaffold_1431 . biological_region 4479 4479 0.999 + . logic_name=eponine scaffold_1431 ensembl protein_coding_gene 3058 4703 . + . ID=Phyra86987;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1431000001;logic_name=jgi_phyra1 scaffold_1431 ensembl transcript 3058 4703 . + . ID=Phyra86987;Parent=Phyra86987;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1431 . CDS 3058 3692 . + 0 ID=Phyra86987;Parent=Phyra86987;rank=1 scaffold_1431 . exon 3058 3692 . + . ID=Phyra86987.1;Parent=Phyra86987;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1431 . CDS 3750 4703 . + 0 ID=Phyra86987;Parent=Phyra86987;rank=2 scaffold_1431 . exon 3750 4703 . + . ID=Phyra86987.2;Parent=Phyra86987;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1430 1 4796 scaffold_1430 . biological_region 1330 1334 0.999 + . logic_name=eponine scaffold_1430 . repeat_region 1710 1740 . ? . description=dust scaffold_1430 . repeat_region 1713 1740 . ? . description=trf scaffold_1430 . biological_region 2126 2132 0.999 - . logic_name=eponine scaffold_1430 . biological_region 3670 3671 0.999 + . logic_name=eponine scaffold_1430 . biological_region 3820 3822 0.999 - . logic_name=eponine scaffold_1430 . biological_region 3891 3893 0.999 - . logic_name=eponine scaffold_1430 ensembl protein_coding_gene 1740 3850 . + . ID=Phyra86986;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1430000001;logic_name=jgi_phyra1 scaffold_1430 ensembl transcript 1740 3850 . + . ID=Phyra86986;Parent=Phyra86986;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1430 . CDS 1740 2313 . + 0 ID=Phyra86986;Parent=Phyra86986;rank=1 scaffold_1430 . exon 1740 2313 . + . ID=Phyra86986.1;Parent=Phyra86986;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1430 . CDS 2334 2562 . + 0 ID=Phyra86986;Parent=Phyra86986;rank=2 scaffold_1430 . exon 2334 2562 . + . ID=Phyra86986.2;Parent=Phyra86986;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1430 . CDS 2699 3543 . + 0 ID=Phyra86986;Parent=Phyra86986;rank=3 scaffold_1430 . exon 2699 3543 . + . ID=Phyra86986.3;Parent=Phyra86986;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1430 . CDS 3588 3850 . + 0 ID=Phyra86986;Parent=Phyra86986;rank=4 scaffold_1430 . exon 3588 3850 . + . ID=Phyra86986.4;Parent=Phyra86986;constitutive=1;ensembl_phase=1;rank=4 ##gff-version 3 ##sequence-region scaffold_1383 1 4800 scaffold_1383 . repeat_region 1097 1104 . ? . description=dust scaffold_1383 . repeat_region 1315 1346 . ? . description=trf scaffold_1383 . biological_region 1545 1545 0.999 - . logic_name=eponine scaffold_1383 . biological_region 1996 1997 0.999 + . logic_name=eponine scaffold_1383 . biological_region 2748 2751 0.999 - . logic_name=eponine scaffold_1383 . biological_region 3286 3288 0.999 - . logic_name=eponine scaffold_1383 ensembl protein_coding_gene 1745 4108 . + . ID=Phyra86922;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1383000001;logic_name=jgi_phyra1 scaffold_1383 ensembl transcript 1745 4108 . + . ID=Phyra86922;Parent=Phyra86922;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1383 . CDS 1745 4108 . + 0 ID=Phyra86922;Parent=Phyra86922;rank=1 scaffold_1383 . exon 1745 4108 . + . ID=Phyra86922.1;Parent=Phyra86922;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1429 1 4802 scaffold_1429 . biological_region 627 628 0.999 + . logic_name=eponine scaffold_1429 . biological_region 810 814 0.999 + . logic_name=eponine scaffold_1429 . repeat_region 3635 3653 . ? . description=dust scaffold_1429 . repeat_region 4478 4485 . ? . description=dust scaffold_1429 ensembl protein_coding_gene 115 1241 . - . ID=Phyra86985;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1429000001;logic_name=jgi_phyra1 scaffold_1429 ensembl transcript 115 1241 . - . ID=Phyra86985;Parent=Phyra86985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1429 . CDS 115 312 . - 0 ID=Phyra86985;Parent=Phyra86985;rank=3 scaffold_1429 . exon 115 312 . - . ID=Phyra86985.3;Parent=Phyra86985;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1429 . CDS 337 1016 . - 0 ID=Phyra86985;Parent=Phyra86985;rank=2 scaffold_1429 . exon 337 1016 . - . ID=Phyra86985.2;Parent=Phyra86985;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1429 . CDS 1117 1241 . - 0 ID=Phyra86985;Parent=Phyra86985;rank=1 scaffold_1429 . exon 1117 1241 . - . ID=Phyra86985.1;Parent=Phyra86985;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1428 1 4810 scaffold_1428 . biological_region 3299 3299 0.999 + . logic_name=eponine scaffold_1428 . biological_region 3363 3366 0.999 + . logic_name=eponine scaffold_1428 . biological_region 3694 3696 0.999 + . logic_name=eponine scaffold_1428 ensembl protein_coding_gene 221 2504 . - . ID=Phyra86984;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1428000001;logic_name=jgi_phyra1 scaffold_1428 ensembl transcript 221 2504 . - . ID=Phyra86984;Parent=Phyra86984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1428 . CDS 221 601 . - 0 ID=Phyra86984;Parent=Phyra86984;rank=2 scaffold_1428 . exon 221 601 . - . ID=Phyra86984.2;Parent=Phyra86984;constitutive=1;rank=2 scaffold_1428 . CDS 672 2504 . - 0 ID=Phyra86984;Parent=Phyra86984;rank=1 scaffold_1428 . exon 672 2504 . - . ID=Phyra86984.1;Parent=Phyra86984;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1517 1 4815 scaffold_1517 . repeat_region 2323 3739 . ? . description=dust scaffold_1517 ensembl protein_coding_gene 969 4513 . - . ID=Phyra87058;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1517000001;logic_name=jgi_phyra1 scaffold_1517 ensembl transcript 969 4513 . - . ID=Phyra87058;Parent=Phyra87058;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1517 . CDS 969 2255 . - 0 ID=Phyra87058;Parent=Phyra87058;rank=2 scaffold_1517 . exon 969 2255 . - . ID=Phyra87058.2;Parent=Phyra87058;constitutive=1;rank=2 scaffold_1517 . CDS 3743 4513 . - 0 ID=Phyra87058;Parent=Phyra87058;rank=1 scaffold_1517 . exon 3743 4513 . - . ID=Phyra87058.1;Parent=Phyra87058;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1440 1 4820 scaffold_1440 . repeat_region 2060 2733 . ? . description=dust scaffold_1440 . repeat_region 3463 3470 . ? . description=dust scaffold_1440 . repeat_region 3742 3761 . ? . description=trf scaffold_1440 . repeat_region 3742 3761 . ? . description=dust scaffold_1440 . repeat_region 4806 4815 . ? . description=dust scaffold_1440 ensembl protein_coding_gene 1997 4773 . + . ID=Phyra86997;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1440000001;logic_name=jgi_phyra1 scaffold_1440 ensembl transcript 1997 4773 . + . ID=Phyra86997;Parent=Phyra86997;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1440 . CDS 1997 2048 . + 0 ID=Phyra86997;Parent=Phyra86997;rank=1 scaffold_1440 . exon 1997 2048 . + . ID=Phyra86997.1;Parent=Phyra86997;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1440 . CDS 2776 3088 . + 0 ID=Phyra86997;Parent=Phyra86997;rank=2 scaffold_1440 . exon 2776 3088 . + . ID=Phyra86997.2;Parent=Phyra86997;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1440 . CDS 3153 3239 . + 0 ID=Phyra86997;Parent=Phyra86997;rank=3 scaffold_1440 . exon 3153 3239 . + . ID=Phyra86997.3;Parent=Phyra86997;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1440 . CDS 3322 3450 . + 0 ID=Phyra86997;Parent=Phyra86997;rank=4 scaffold_1440 . exon 3322 3450 . + . ID=Phyra86997.4;Parent=Phyra86997;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_1440 . CDS 3537 4000 . + 0 ID=Phyra86997;Parent=Phyra86997;rank=5 scaffold_1440 . exon 3537 4000 . + . ID=Phyra86997.5;Parent=Phyra86997;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_1440 . CDS 4074 4374 . + 0 ID=Phyra86997;Parent=Phyra86997;rank=6 scaffold_1440 . exon 4074 4374 . + . ID=Phyra86997.6;Parent=Phyra86997;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_1440 . CDS 4420 4773 . + 0 ID=Phyra86997;Parent=Phyra86997;rank=7 scaffold_1440 . exon 4420 4773 . + . ID=Phyra86997.7;Parent=Phyra86997;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 ##gff-version 3 ##sequence-region scaffold_1426 1 4832 scaffold_1426 . repeat_region 10 1610 . - . description=Polinton-1_PI scaffold_1426 . repeat_region 1790 1914 . - . description=Polinton-1_PI scaffold_1426 . repeat_region 1926 2061 . ? . description=dust scaffold_1426 . repeat_region 2062 2342 . ? . description=trf scaffold_1426 . repeat_region 3705 3712 . ? . description=dust scaffold_1426 . repeat_region 3749 4832 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1425 1 4836 scaffold_1425 . biological_region 1704 1705 0.999 - . logic_name=eponine scaffold_1425 . biological_region 1807 1808 0.999 - . logic_name=eponine scaffold_1425 . biological_region 2198 2199 0.999 - . logic_name=eponine scaffold_1425 ensembl protein_coding_gene 1064 2392 . - . ID=Phyra86979;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1425000001;logic_name=jgi_phyra1 scaffold_1425 ensembl transcript 1064 2392 . - . ID=Phyra86979;Parent=Phyra86979;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1425 . CDS 1064 2392 . - 0 ID=Phyra86979;Parent=Phyra86979;rank=1 scaffold_1425 . exon 1064 2392 . - . ID=Phyra86979.1;Parent=Phyra86979;constitutive=1;rank=1 scaffold_1425 ensembl protein_coding_gene 4381 4773 . + . ID=Phyra86980;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1425000002;logic_name=jgi_phyra1 scaffold_1425 ensembl transcript 4381 4773 . + . ID=Phyra86980;Parent=Phyra86980;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1425 . CDS 4381 4773 . + 0 ID=Phyra86980;Parent=Phyra86980;rank=1 scaffold_1425 . exon 4381 4773 . + . ID=Phyra86980.1;Parent=Phyra86980;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1436 1 4837 scaffold_1436 . repeat_region 355 396 . ? . description=trf scaffold_1436 . repeat_region 406 414 . ? . description=dust scaffold_1436 . repeat_region 1382 1431 . ? . description=dust scaffold_1436 . repeat_region 2864 2913 . ? . description=dust scaffold_1436 ensembl protein_coding_gene 2070 3267 . + . ID=Phyra86992;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1436000001;logic_name=jgi_phyra1 scaffold_1436 ensembl transcript 2070 3267 . + . ID=Phyra86992;Parent=Phyra86992;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1436 . CDS 2070 2235 . + 0 ID=Phyra86992;Parent=Phyra86992;rank=1 scaffold_1436 . exon 2070 2235 . + . ID=Phyra86992.1;Parent=Phyra86992;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1436 . CDS 2262 2848 . + 0 ID=Phyra86992;Parent=Phyra86992;rank=2 scaffold_1436 . exon 2262 2848 . + . ID=Phyra86992.2;Parent=Phyra86992;constitutive=1;ensembl_phase=1;rank=2 scaffold_1436 . CDS 2971 3081 . + 0 ID=Phyra86992;Parent=Phyra86992;rank=3 scaffold_1436 . exon 2971 3081 . + . ID=Phyra86992.3;Parent=Phyra86992;constitutive=1;rank=3 scaffold_1436 . CDS 3142 3267 . + 0 ID=Phyra86992;Parent=Phyra86992;rank=4 scaffold_1436 . exon 3142 3267 . + . ID=Phyra86992.4;Parent=Phyra86992;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_1423 1 4840 scaffold_1423 . repeat_region 330 343 . ? . description=dust scaffold_1423 . repeat_region 678 706 . ? . description=trf scaffold_1423 . repeat_region 2165 2561 . ? . description=dust scaffold_1423 ensembl protein_coding_gene 2651 4824 . + . ID=Phyra86978;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1423000001;logic_name=jgi_phyra1 scaffold_1423 ensembl transcript 2651 4824 . + . ID=Phyra86978;Parent=Phyra86978;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1423 . CDS 2651 4013 . + 0 ID=Phyra86978;Parent=Phyra86978;rank=1 scaffold_1423 . exon 2651 4013 . + . ID=Phyra86978.1;Parent=Phyra86978;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1423 . CDS 4037 4824 . + 0 ID=Phyra86978;Parent=Phyra86978;rank=2 scaffold_1423 . exon 4037 4824 . + . ID=Phyra86978.2;Parent=Phyra86978;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1418 1 4847 scaffold_1418 . biological_region 1 1 0.999 + . logic_name=eponine scaffold_1418 . repeat_region 1009 2266 . ? . description=dust scaffold_1418 . biological_region 3962 3966 0.999 - . logic_name=eponine scaffold_1418 . biological_region 4186 4192 0.999 - . logic_name=eponine scaffold_1418 ensembl protein_coding_gene 2478 2921 . + . ID=Phyra41848;biotype=protein_coding;external_name=gwEuk.1418.3.1;logic_name=jgi_phyra1 scaffold_1418 ensembl transcript 2478 2921 . + . ID=Phyra41848;Parent=Phyra41848;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1418 . CDS 2478 2921 . + 0 ID=Phyra41848;Parent=Phyra41848;rank=1 scaffold_1418 . exon 2478 2921 . + . ID=Phyra41848.1;Parent=Phyra41848;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1420 1 4852 scaffold_1420 . repeat_region 7 560 . + . description=GypsyPi-1c_I-int scaffold_1420 . repeat_region 815 1093 . + . description=GypsyPi-1c_I-int scaffold_1420 . biological_region 1112 1115 0.999 + . logic_name=eponine scaffold_1420 . biological_region 1166 1170 0.999 - . logic_name=eponine scaffold_1420 . repeat_region 1346 1360 . ? . description=dust scaffold_1420 . repeat_region 1670 2338 . ? . description=dust scaffold_1420 . repeat_region 4379 4480 . ? . description=trf scaffold_1420 . repeat_region 4452 4526 . ? . description=trf scaffold_1420 . repeat_region 4739 4752 . ? . description=dust scaffold_1420 ensembl protein_coding_gene 185 439 . + . ID=Phyra41873;biotype=protein_coding;external_name=gwEuk.1420.2.1;logic_name=jgi_phyra1 scaffold_1420 ensembl transcript 185 439 . + . ID=Phyra41873;Parent=Phyra41873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1420 . CDS 185 439 . + 0 ID=Phyra41873;Parent=Phyra41873;rank=1 scaffold_1420 . exon 185 439 . + . ID=Phyra41873.1;Parent=Phyra41873;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1419 1 4855 scaffold_1419 . biological_region 658 662 0.999 - . logic_name=eponine scaffold_1419 . repeat_region 2320 2331 . ? . description=dust scaffold_1419 . repeat_region 2699 3400 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1422 1 4856 scaffold_1422 . repeat_region 430 468 . ? . description=trf scaffold_1422 . biological_region 759 763 0.999 + . logic_name=eponine scaffold_1422 . biological_region 1577 1580 0.999 - . logic_name=eponine scaffold_1422 . biological_region 1720 1722 0.999 - . logic_name=eponine scaffold_1422 ensembl protein_coding_gene 1401 3383 . - . ID=Phyra72479;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1422000001;logic_name=jgi_phyra1 scaffold_1422 ensembl transcript 1401 3383 . - . ID=Phyra72479;Parent=Phyra72479;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1422 . CDS 1401 3383 . - 0 ID=Phyra72479;Parent=Phyra72479;rank=1 scaffold_1422 . exon 1401 3383 . - . ID=Phyra72479.1;Parent=Phyra72479;constitutive=1;rank=1 scaffold_1422 ensembl protein_coding_gene 6 848 . - . ID=Phyra86976;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1422000001;logic_name=jgi_phyra1 scaffold_1422 ensembl transcript 6 848 . - . ID=Phyra86976;Parent=Phyra86976;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1422 . CDS 6 848 . - 0 ID=Phyra86976;Parent=Phyra86976;rank=1 scaffold_1422 . exon 6 848 . - . ID=Phyra86976.1;Parent=Phyra86976;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1478 1 4857 scaffold_1478 . repeat_region 685 2534 . ? . description=dust scaffold_1478 . biological_region 3164 3168 0.999 + . logic_name=eponine scaffold_1478 . biological_region 3242 3246 0.999 - . logic_name=eponine scaffold_1478 . biological_region 3262 3264 0.999 - . logic_name=eponine scaffold_1478 . biological_region 3316 3322 0.999 + . logic_name=eponine scaffold_1478 ensembl protein_coding_gene 3208 4806 . + . ID=Phyra87032;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1478000001;logic_name=jgi_phyra1 scaffold_1478 ensembl transcript 3208 4806 . + . ID=Phyra87032;Parent=Phyra87032;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1478 . CDS 3208 4806 . + 0 ID=Phyra87032;Parent=Phyra87032;rank=1 scaffold_1478 . exon 3208 4806 . + . ID=Phyra87032.1;Parent=Phyra87032;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1468 1 4860 ##gff-version 3 ##sequence-region scaffold_1417 1 4864 scaffold_1417 . repeat_region 1840 2010 . ? . description=dust scaffold_1417 ensembl protein_coding_gene 3817 4785 . - . ID=Phyra72478;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1417000001;logic_name=jgi_phyra1 scaffold_1417 ensembl transcript 3817 4785 . - . ID=Phyra72478;Parent=Phyra72478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1417 . CDS 3817 4785 . - 0 ID=Phyra72478;Parent=Phyra72478;rank=1 scaffold_1417 . exon 3817 4785 . - . ID=Phyra72478.1;Parent=Phyra72478;constitutive=1;rank=1 scaffold_1417 ensembl protein_coding_gene 22 2809 . - . ID=Phyra86971;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1417000001;logic_name=jgi_phyra1 scaffold_1417 ensembl transcript 22 2809 . - . ID=Phyra86971;Parent=Phyra86971;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1417 . CDS 22 1577 . - 0 ID=Phyra86971;Parent=Phyra86971;rank=3 scaffold_1417 . exon 22 1577 . - . ID=Phyra86971.3;Parent=Phyra86971;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1417 . CDS 1651 1731 . - 0 ID=Phyra86971;Parent=Phyra86971;rank=2 scaffold_1417 . exon 1651 1731 . - . ID=Phyra86971.2;Parent=Phyra86971;constitutive=1;rank=2 scaffold_1417 . CDS 2033 2809 . - 0 ID=Phyra86971;Parent=Phyra86971;rank=1 scaffold_1417 . exon 2033 2809 . - . ID=Phyra86971.1;Parent=Phyra86971;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1435 1 4885 scaffold_1435 . biological_region 24 29 0.999 + . logic_name=eponine scaffold_1435 . biological_region 108 112 0.999 + . logic_name=eponine scaffold_1435 . repeat_region 643 714 . + . description=GypsyPi-1c_I-int scaffold_1435 . biological_region 1659 1661 0.999 + . logic_name=eponine scaffold_1435 . repeat_region 2394 3166 . ? . description=dust scaffold_1435 . biological_region 3383 3385 0.999 + . logic_name=eponine scaffold_1435 . repeat_region 3584 4210 . + . description=GypsyPi-1c_I-int scaffold_1435 . biological_region 3950 3950 0.999 + . logic_name=eponine scaffold_1435 ensembl protein_coding_gene 736 2136 . - . ID=Phyra86990;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1435000001;logic_name=jgi_phyra1 scaffold_1435 ensembl transcript 736 2136 . - . ID=Phyra86990;Parent=Phyra86990;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1435 . CDS 736 2136 . - 0 ID=Phyra86990;Parent=Phyra86990;rank=1 scaffold_1435 . exon 736 2136 . - . ID=Phyra86990.1;Parent=Phyra86990;constitutive=1;rank=1 scaffold_1435 ensembl protein_coding_gene 3508 4074 . + . ID=Phyra86991;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1435000002;logic_name=jgi_phyra1 scaffold_1435 ensembl transcript 3508 4074 . + . ID=Phyra86991;Parent=Phyra86991;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1435 . CDS 3508 4074 . + 0 ID=Phyra86991;Parent=Phyra86991;rank=1 scaffold_1435 . exon 3508 4074 . + . ID=Phyra86991.1;Parent=Phyra86991;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1411 1 4910 scaffold_1411 . repeat_region 546 567 . ? . description=trf scaffold_1411 . repeat_region 1236 2691 . ? . description=dust scaffold_1411 . biological_region 2834 2839 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1363 1 4914 scaffold_1363 . repeat_region 7 442 . + . description=GypsyPi-1c_I-int scaffold_1363 . repeat_region 760 1038 . + . description=GypsyPi-1c_I-int scaffold_1363 . biological_region 1153 1156 0.999 - . logic_name=eponine scaffold_1363 . repeat_region 1291 1308 . ? . description=dust scaffold_1363 . biological_region 1994 1995 0.999 + . logic_name=eponine scaffold_1363 . biological_region 2175 2182 0.999 + . logic_name=eponine scaffold_1363 . repeat_region 3101 3784 . ? . description=dust scaffold_1363 ensembl protein_coding_gene 130 384 . + . ID=Phyra41390;biotype=protein_coding;external_name=gwEuk.1363.3.1;logic_name=jgi_phyra1 scaffold_1363 ensembl transcript 130 384 . + . ID=Phyra41390;Parent=Phyra41390;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1363 . CDS 130 384 . + 0 ID=Phyra41390;Parent=Phyra41390;rank=1 scaffold_1363 . exon 130 384 . + . ID=Phyra41390.1;Parent=Phyra41390;constitutive=1;rank=1 scaffold_1363 ensembl protein_coding_gene 1540 2655 . - . ID=Phyra86895;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1363000001;logic_name=jgi_phyra1 scaffold_1363 ensembl transcript 1540 2655 . - . ID=Phyra86895;Parent=Phyra86895;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1363 . CDS 1540 2655 . - 0 ID=Phyra86895;Parent=Phyra86895;rank=1 scaffold_1363 . exon 1540 2655 . - . ID=Phyra86895.1;Parent=Phyra86895;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1410 1 4914 scaffold_1410 . repeat_region 1108 3234 . ? . description=dust scaffold_1410 ensembl protein_coding_gene 3236 4264 . - . ID=Phyra41820;biotype=protein_coding;external_name=gwEuk.1410.1.1;logic_name=jgi_phyra1 scaffold_1410 ensembl transcript 3236 4264 . - . ID=Phyra41820;Parent=Phyra41820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1410 . CDS 3236 4264 . - 0 ID=Phyra41820;Parent=Phyra41820;rank=1 scaffold_1410 . exon 3236 4264 . - . ID=Phyra41820.1;Parent=Phyra41820;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1421 1 4914 scaffold_1421 . repeat_region 160 181 . ? . description=trf scaffold_1421 . repeat_region 1150 1216 . ? . description=dust scaffold_1421 . biological_region 1583 1586 0.999 - . logic_name=eponine scaffold_1421 . repeat_region 2562 2572 . ? . description=dust scaffold_1421 . repeat_region 2657 2664 . ? . description=dust scaffold_1421 . repeat_region 2799 2806 . ? . description=dust scaffold_1421 . biological_region 3735 3739 0.999 - . logic_name=eponine scaffold_1421 . repeat_region 4115 4144 . ? . description=trf scaffold_1421 . repeat_region 4509 4606 . ? . description=trf scaffold_1421 ensembl protein_coding_gene 10 2247 . - . ID=Phyra86974;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1421000001;logic_name=jgi_phyra1 scaffold_1421 ensembl transcript 10 2247 . - . ID=Phyra86974;Parent=Phyra86974;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1421 . CDS 10 1110 . - 0 ID=Phyra86974;Parent=Phyra86974;rank=3 scaffold_1421 . exon 10 1110 . - . ID=Phyra86974.3;Parent=Phyra86974;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1421 . CDS 1253 2004 . - 0 ID=Phyra86974;Parent=Phyra86974;rank=2 scaffold_1421 . exon 1253 2004 . - . ID=Phyra86974.2;Parent=Phyra86974;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1421 . CDS 2069 2247 . - 0 ID=Phyra86974;Parent=Phyra86974;rank=1 scaffold_1421 . exon 2069 2247 . - . ID=Phyra86974.1;Parent=Phyra86974;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1421 ensembl protein_coding_gene 2977 4862 . + . ID=Phyra86975;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1421000002;logic_name=jgi_phyra1 scaffold_1421 ensembl transcript 2977 4862 . + . ID=Phyra86975;Parent=Phyra86975;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1421 . CDS 2977 3514 . + 0 ID=Phyra86975;Parent=Phyra86975;rank=1 scaffold_1421 . exon 2977 3514 . + . ID=Phyra86975.1;Parent=Phyra86975;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1421 . CDS 3545 3648 . + 0 ID=Phyra86975;Parent=Phyra86975;rank=2 scaffold_1421 . exon 3545 3648 . + . ID=Phyra86975.2;Parent=Phyra86975;constitutive=1;ensembl_phase=1;rank=2 scaffold_1421 . CDS 3928 4431 . + 0 ID=Phyra86975;Parent=Phyra86975;rank=3 scaffold_1421 . exon 3928 4431 . + . ID=Phyra86975.3;Parent=Phyra86975;constitutive=1;rank=3 scaffold_1421 . CDS 4521 4862 . + 0 ID=Phyra86975;Parent=Phyra86975;rank=4 scaffold_1421 . exon 4521 4862 . + . ID=Phyra86975.4;Parent=Phyra86975;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_1408 1 4922 scaffold_1408 . biological_region 2110 2113 0.999 + . logic_name=eponine scaffold_1408 . biological_region 2398 2402 0.999 - . logic_name=eponine scaffold_1408 . repeat_region 3329 3354 . ? . description=trf scaffold_1408 . repeat_region 3749 3778 . ? . description=trf scaffold_1408 ensembl protein_coding_gene 26 433 . + . ID=Phyra86959;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1408000001;logic_name=jgi_phyra1 scaffold_1408 ensembl transcript 26 433 . + . ID=Phyra86959;Parent=Phyra86959;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1408 . CDS 26 433 . + 0 ID=Phyra86959;Parent=Phyra86959;rank=1 scaffold_1408 . exon 26 433 . + . ID=Phyra86959.1;Parent=Phyra86959;constitutive=1;rank=1 scaffold_1408 ensembl protein_coding_gene 640 1719 . + . ID=Phyra86960;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1408000002;logic_name=jgi_phyra1 scaffold_1408 ensembl transcript 640 1719 . + . ID=Phyra86960;Parent=Phyra86960;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1408 . CDS 640 1719 . + 0 ID=Phyra86960;Parent=Phyra86960;rank=1 scaffold_1408 . exon 640 1719 . + . ID=Phyra86960.1;Parent=Phyra86960;constitutive=1;rank=1 scaffold_1408 ensembl protein_coding_gene 1814 3057 . - . ID=Phyra86961;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1408000003;logic_name=jgi_phyra1 scaffold_1408 ensembl transcript 1814 3057 . - . ID=Phyra86961;Parent=Phyra86961;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1408 . CDS 1814 2502 . - 0 ID=Phyra86961;Parent=Phyra86961;rank=4 scaffold_1408 . exon 1814 2502 . - . ID=Phyra86961.4;Parent=Phyra86961;constitutive=1;ensembl_phase=1;rank=4 scaffold_1408 . CDS 2581 2670 . - 0 ID=Phyra86961;Parent=Phyra86961;rank=3 scaffold_1408 . exon 2581 2670 . - . ID=Phyra86961.3;Parent=Phyra86961;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1408 . CDS 2748 2793 . - 0 ID=Phyra86961;Parent=Phyra86961;rank=2 scaffold_1408 . exon 2748 2793 . - . ID=Phyra86961.2;Parent=Phyra86961;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1408 . CDS 2884 3057 . - 0 ID=Phyra86961;Parent=Phyra86961;rank=1 scaffold_1408 . exon 2884 3057 . - . ID=Phyra86961.1;Parent=Phyra86961;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1409 1 4922 scaffold_1409 . repeat_region 39 61 . ? . description=trf scaffold_1409 . repeat_region 39 61 . ? . description=dust scaffold_1409 . repeat_region 846 855 . ? . description=dust scaffold_1409 . repeat_region 1198 2726 . ? . description=dust scaffold_1409 . repeat_region 3225 3235 . ? . description=dust scaffold_1409 ensembl protein_coding_gene 3413 4144 . + . ID=Phyra72475;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1409000001;logic_name=jgi_phyra1 scaffold_1409 ensembl transcript 3413 4144 . + . ID=Phyra72475;Parent=Phyra72475;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1409 . CDS 3413 4144 . + 0 ID=Phyra72475;Parent=Phyra72475;rank=1 scaffold_1409 . exon 3413 4144 . + . ID=Phyra72475.1;Parent=Phyra72475;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1414 1 4931 scaffold_1414 . repeat_region 37 79 . ? . description=trf scaffold_1414 . repeat_region 352 389 . ? . description=trf scaffold_1414 . repeat_region 2112 2133 . ? . description=trf scaffold_1414 . repeat_region 2151 3140 . ? . description=trf scaffold_1414 . repeat_region 2743 2765 . ? . description=trf scaffold_1414 . repeat_region 3074 3116 . + . description=(CGGA)n scaffold_1414 . repeat_region 3077 3114 . ? . description=dust scaffold_1414 . repeat_region 3084 3114 . ? . description=trf scaffold_1414 . repeat_region 3205 3271 . ? . description=trf scaffold_1414 . repeat_region 3608 3659 . ? . description=trf scaffold_1414 . repeat_region 3608 3659 . ? . description=dust scaffold_1414 . repeat_region 3708 3757 . ? . description=dust scaffold_1414 . repeat_region 3942 4000 . + . description=(CAGG)n scaffold_1414 . repeat_region 4017 4075 . ? . description=trf scaffold_1414 . repeat_region 4021 4082 . ? . description=dust scaffold_1414 . repeat_region 4149 4222 . ? . description=dust scaffold_1414 . repeat_region 4173 4222 . ? . description=trf scaffold_1414 . repeat_region 4173 4222 . ? . description=trf scaffold_1414 . repeat_region 4372 4424 . ? . description=trf scaffold_1414 . repeat_region 4372 4425 . ? . description=trf scaffold_1414 . repeat_region 4761 4816 . ? . description=trf scaffold_1414 . repeat_region 4761 4816 . ? . description=dust scaffold_1414 ensembl pseudogenic_tRNA 3120 3187 . + . ID=EPrPRAG00000000033;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_1414 ensembl transcript 3120 3187 . + . ID=EPrPRAT00000000033;Parent=EPrPRAG00000000033;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_1414 ensembl tRNA_gene 80 151 . + . ID=EPrPRAG00000000061;biotype=tRNA;description=tRNA-Gly for anticodon UCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_1414 ensembl transcript 80 151 . + . ID=EPrPRAT00000000061;Parent=EPrPRAG00000000061;biotype=tRNA;logic_name=ncrna_eg scaffold_1414 ensembl pseudogenic_tRNA 4283 4354 . + . ID=EPrPRAG00000000212;biotype=tRNA_pseudogene;description=tRNA-Gly for anticodon UCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_1414 ensembl transcript 4283 4354 . + . ID=EPrPRAT00000000212;Parent=EPrPRAG00000000212;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_1414 . exon 3120 3187 . + . ID=EPrPRAE00000000033;Parent=EPrPRAT00000000033;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1414 . exon 80 151 . + . ID=EPrPRAE00000000061;Parent=EPrPRAT00000000061;constitutive=1;rank=1 scaffold_1414 . exon 4283 4354 . + . ID=EPrPRAE00000000212;Parent=EPrPRAT00000000212;constitutive=1;rank=1 scaffold_1414 ensembl protein_coding_gene 1070 1513 . - . ID=Phyra72476;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1414000001;logic_name=jgi_phyra1 scaffold_1414 ensembl transcript 1070 1513 . - . ID=Phyra72476;Parent=Phyra72476;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1414 . CDS 1070 1513 . - 0 ID=Phyra72476;Parent=Phyra72476;rank=1 scaffold_1414 . exon 1070 1513 . - . ID=Phyra72476.1;Parent=Phyra72476;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1416 1 4941 scaffold_1416 . biological_region 2296 2298 0.999 + . logic_name=eponine scaffold_1416 . repeat_region 2301 2354 . ? . description=trf scaffold_1416 . repeat_region 2409 2687 . ? . description=dust scaffold_1416 . repeat_region 3171 3179 . ? . description=dust scaffold_1416 ensembl protein_coding_gene 106 1515 . + . ID=Phyra86969;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1416000001;logic_name=jgi_phyra1 scaffold_1416 ensembl transcript 106 1515 . + . ID=Phyra86969;Parent=Phyra86969;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1416 . CDS 106 1515 . + 0 ID=Phyra86969;Parent=Phyra86969;rank=1 scaffold_1416 . exon 106 1515 . + . ID=Phyra86969.1;Parent=Phyra86969;constitutive=1;rank=1 scaffold_1416 ensembl protein_coding_gene 1908 3432 . - . ID=Phyra86970;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1416000002;logic_name=jgi_phyra1 scaffold_1416 ensembl transcript 1908 3432 . - . ID=Phyra86970;Parent=Phyra86970;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1416 . CDS 1908 2386 . - 0 ID=Phyra86970;Parent=Phyra86970;rank=4 scaffold_1416 . exon 1908 2386 . - . ID=Phyra86970.4;Parent=Phyra86970;constitutive=1;ensembl_phase=1;rank=4 scaffold_1416 . CDS 2783 2990 . - 0 ID=Phyra86970;Parent=Phyra86970;rank=3 scaffold_1416 . exon 2783 2990 . - . ID=Phyra86970.3;Parent=Phyra86970;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1416 . CDS 3065 3135 . - 0 ID=Phyra86970;Parent=Phyra86970;rank=2 scaffold_1416 . exon 3065 3135 . - . ID=Phyra86970.2;Parent=Phyra86970;constitutive=1;ensembl_phase=1;rank=2 scaffold_1416 . CDS 3207 3432 . - 0 ID=Phyra86970;Parent=Phyra86970;rank=1 scaffold_1416 . exon 3207 3432 . - . ID=Phyra86970.1;Parent=Phyra86970;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1400 1 4953 scaffold_1400 . repeat_region 1088 1130 . ? . description=trf scaffold_1400 . repeat_region 1968 2819 . ? . description=dust scaffold_1400 . repeat_region 3602 3644 . ? . description=trf scaffold_1400 . repeat_region 4021 4061 . ? . description=trf scaffold_1400 . repeat_region 4162 4208 . ? . description=trf scaffold_1400 . repeat_region 4717 4769 . ? . description=trf scaffold_1400 . repeat_region 4717 4773 . ? . description=trf scaffold_1400 . repeat_region 4888 4947 . ? . description=trf scaffold_1400 ensembl protein_coding_gene 1256 3097 . - . ID=Phyra41787;biotype=protein_coding;external_name=gwEuk.1400.5.1;logic_name=jgi_phyra1 scaffold_1400 ensembl transcript 1256 3097 . - . ID=Phyra41787;Parent=Phyra41787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1400 . CDS 1256 1655 . - 0 ID=Phyra41787;Parent=Phyra41787;rank=2 scaffold_1400 . exon 1256 1655 . - . ID=Phyra41787.2;Parent=Phyra41787;constitutive=1;ensembl_phase=2;rank=2 scaffold_1400 . CDS 2838 3097 . - 0 ID=Phyra41787;Parent=Phyra41787;rank=1 scaffold_1400 . exon 2838 3097 . - . ID=Phyra41787.1;Parent=Phyra41787;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1400 ensembl protein_coding_gene 2 901 . + . ID=Phyra86948;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1400000001;logic_name=jgi_phyra1 scaffold_1400 ensembl transcript 2 901 . + . ID=Phyra86948;Parent=Phyra86948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1400 . CDS 2 901 . + 0 ID=Phyra86948;Parent=Phyra86948;rank=1 scaffold_1400 . exon 2 901 . + . ID=Phyra86948.1;Parent=Phyra86948;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1405 1 4953 scaffold_1405 . biological_region 2465 2468 0.999 - . logic_name=eponine scaffold_1405 ensembl protein_coding_gene 5 407 . - . ID=Phyra86956;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1405000001;logic_name=jgi_phyra1 scaffold_1405 ensembl transcript 5 407 . - . ID=Phyra86956;Parent=Phyra86956;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1405 . CDS 5 407 . - 0 ID=Phyra86956;Parent=Phyra86956;rank=1 scaffold_1405 . exon 5 407 . - . ID=Phyra86956.1;Parent=Phyra86956;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1405 ensembl protein_coding_gene 1135 2826 . - . ID=Phyra86957;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1405000002;logic_name=jgi_phyra1 scaffold_1405 ensembl transcript 1135 2826 . - . ID=Phyra86957;Parent=Phyra86957;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1405 . CDS 1135 2826 . - 0 ID=Phyra86957;Parent=Phyra86957;rank=1 scaffold_1405 . exon 1135 2826 . - . ID=Phyra86957.1;Parent=Phyra86957;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1404 1 4955 scaffold_1404 . repeat_region 1195 2432 . ? . description=dust scaffold_1404 ensembl protein_coding_gene 814 3596 . + . ID=Phyra86954;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1404000001;logic_name=jgi_phyra1 scaffold_1404 ensembl transcript 814 3596 . + . ID=Phyra86954;Parent=Phyra86954;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1404 . CDS 814 846 . + 0 ID=Phyra86954;Parent=Phyra86954;rank=1 scaffold_1404 . exon 814 846 . + . ID=Phyra86954.1;Parent=Phyra86954;constitutive=1;rank=1 scaffold_1404 . CDS 2438 2857 . + 0 ID=Phyra86954;Parent=Phyra86954;rank=2 scaffold_1404 . exon 2438 2857 . + . ID=Phyra86954.2;Parent=Phyra86954;constitutive=1;rank=2 scaffold_1404 . CDS 2934 3080 . + 0 ID=Phyra86954;Parent=Phyra86954;rank=3 scaffold_1404 . exon 2934 3080 . + . ID=Phyra86954.3;Parent=Phyra86954;constitutive=1;rank=3 scaffold_1404 . CDS 3144 3306 . + 0 ID=Phyra86954;Parent=Phyra86954;rank=4 scaffold_1404 . exon 3144 3306 . + . ID=Phyra86954.4;Parent=Phyra86954;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1404 . CDS 3367 3596 . + 0 ID=Phyra86954;Parent=Phyra86954;rank=5 scaffold_1404 . exon 3367 3596 . + . ID=Phyra86954.5;Parent=Phyra86954;constitutive=1;ensembl_phase=1;rank=5 scaffold_1404 ensembl protein_coding_gene 4239 4768 . + . ID=Phyra86955;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1404000002;logic_name=jgi_phyra1 scaffold_1404 ensembl transcript 4239 4768 . + . ID=Phyra86955;Parent=Phyra86955;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1404 . CDS 4239 4768 . + 0 ID=Phyra86955;Parent=Phyra86955;rank=1 scaffold_1404 . exon 4239 4768 . + . ID=Phyra86955.1;Parent=Phyra86955;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1399 1 4964 scaffold_1399 . biological_region 1998 1998 0.999 + . logic_name=eponine scaffold_1399 . biological_region 2074 2078 0.999 + . logic_name=eponine scaffold_1399 ensembl protein_coding_gene 4 2163 . + . ID=Phyra86946;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1399000001;logic_name=jgi_phyra1 scaffold_1399 ensembl transcript 4 2163 . + . ID=Phyra86946;Parent=Phyra86946;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1399 . CDS 4 2163 . + 0 ID=Phyra86946;Parent=Phyra86946;rank=1 scaffold_1399 . exon 4 2163 . + . ID=Phyra86946.1;Parent=Phyra86946;constitutive=1;rank=1 scaffold_1399 ensembl protein_coding_gene 2683 4689 . - . ID=Phyra86947;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1399000002;logic_name=jgi_phyra1 scaffold_1399 ensembl transcript 2683 4689 . - . ID=Phyra86947;Parent=Phyra86947;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1399 . CDS 2683 4689 . - 0 ID=Phyra86947;Parent=Phyra86947;rank=1 scaffold_1399 . exon 2683 4689 . - . ID=Phyra86947.1;Parent=Phyra86947;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1402 1 4966 scaffold_1402 . biological_region 1192 1194 0.999 + . logic_name=eponine scaffold_1402 . repeat_region 1751 2257 . ? . description=dust scaffold_1402 . repeat_region 2258 3513 . + . description=GypsyPi-1c_I-int scaffold_1402 . biological_region 3180 3185 0.999 + . logic_name=eponine scaffold_1402 . repeat_region 3543 3813 . + . description=GypsyPi-1c_I-int scaffold_1402 . repeat_region 4063 4189 . + . description=GypsyPi-1c_I-int scaffold_1402 ensembl protein_coding_gene 2330 3334 . + . ID=Phyra86951;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1402000001;logic_name=jgi_phyra1 scaffold_1402 ensembl transcript 2330 3334 . + . ID=Phyra86951;Parent=Phyra86951;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1402 . CDS 2330 3334 . + 0 ID=Phyra86951;Parent=Phyra86951;rank=1 scaffold_1402 . exon 2330 3334 . + . ID=Phyra86951.1;Parent=Phyra86951;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1406 1 4972 scaffold_1406 . repeat_region 1 1490 . + . description=GypsyPi-1c_I-int scaffold_1406 . biological_region 652 655 0.999 + . logic_name=eponine scaffold_1406 . repeat_region 1491 2701 . ? . description=dust scaffold_1406 . repeat_region 2820 4872 . + . description=GypsyPi-1c_I-int scaffold_1406 . biological_region 4478 4483 0.999 + . logic_name=eponine scaffold_1406 . biological_region 4550 4550 0.999 - . logic_name=eponine scaffold_1406 . biological_region 4557 4559 0.999 + . logic_name=eponine scaffold_1406 . biological_region 4580 4585 0.999 + . logic_name=eponine scaffold_1406 . biological_region 4593 4602 0.999 - . logic_name=eponine scaffold_1406 ensembl protein_coding_gene 1277 4690 . - . ID=Phyra86958;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1406000001;logic_name=jgi_phyra1 scaffold_1406 ensembl transcript 1277 4690 . - . ID=Phyra86958;Parent=Phyra86958;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1406 . CDS 1277 1326 . - 0 ID=Phyra86958;Parent=Phyra86958;rank=2 scaffold_1406 . exon 1277 1326 . - . ID=Phyra86958.2;Parent=Phyra86958;constitutive=1;ensembl_phase=1;rank=2 scaffold_1406 . CDS 2707 4690 . - 0 ID=Phyra86958;Parent=Phyra86958;rank=1 scaffold_1406 . exon 2707 4690 . - . ID=Phyra86958.1;Parent=Phyra86958;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1407 1 4977 scaffold_1407 . biological_region 199 202 0.999 - . logic_name=eponine scaffold_1407 . repeat_region 2826 2875 . ? . description=dust scaffold_1407 ensembl protein_coding_gene 486 2060 . + . ID=Phyra41791;biotype=protein_coding;external_name=gwEuk.1407.2.1;logic_name=jgi_phyra1 scaffold_1407 ensembl transcript 486 2060 . + . ID=Phyra41791;Parent=Phyra41791;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1407 . CDS 486 896 . + 0 ID=Phyra41791;Parent=Phyra41791;rank=1 scaffold_1407 . exon 486 896 . + . ID=Phyra41791.1;Parent=Phyra41791;constitutive=1;rank=1 scaffold_1407 . CDS 1017 1311 . + 0 ID=Phyra41791;Parent=Phyra41791;rank=2 scaffold_1407 . exon 1017 1311 . + . ID=Phyra41791.2;Parent=Phyra41791;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1407 . CDS 1393 2060 . + 0 ID=Phyra41791;Parent=Phyra41791;rank=3 scaffold_1407 . exon 1393 2060 . + . ID=Phyra41791.3;Parent=Phyra41791;constitutive=1;ensembl_phase=1;rank=3 scaffold_1407 ensembl protein_coding_gene 2387 2824 . - . ID=Phyra41793;biotype=protein_coding;external_name=gwEuk.1407.4.1;logic_name=jgi_phyra1 scaffold_1407 ensembl transcript 2387 2824 . - . ID=Phyra41793;Parent=Phyra41793;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1407 . CDS 2387 2824 . - 0 ID=Phyra41793;Parent=Phyra41793;rank=1 scaffold_1407 . exon 2387 2824 . - . ID=Phyra41793.1;Parent=Phyra41793;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1396 1 4986 scaffold_1396 . repeat_region 1119 1140 . ? . description=trf scaffold_1396 . repeat_region 1898 3747 . ? . description=dust scaffold_1396 . repeat_region 4426 4468 . ? . description=trf scaffold_1396 ensembl protein_coding_gene 9 4986 . - . ID=Phyra86941;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1396000001;logic_name=jgi_phyra1 scaffold_1396 ensembl transcript 9 4986 . - . ID=Phyra86941;Parent=Phyra86941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1396 . CDS 9 1890 . - 0 ID=Phyra86941;Parent=Phyra86941;rank=3 scaffold_1396 . exon 9 1890 . - . ID=Phyra86941.3;Parent=Phyra86941;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1396 . CDS 3778 4212 . - 0 ID=Phyra86941;Parent=Phyra86941;rank=2 scaffold_1396 . exon 3778 4212 . - . ID=Phyra86941.2;Parent=Phyra86941;constitutive=1;rank=2 scaffold_1396 . CDS 4566 4985 . - 0 ID=Phyra86941;Parent=Phyra86941;rank=1 scaffold_1396 . exon 4566 4986 . - . ID=Phyra86941.1;Parent=Phyra86941;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1461 1 4999 scaffold_1461 . repeat_region 417 464 . ? . description=dust scaffold_1461 . repeat_region 1142 1185 . ? . description=trf scaffold_1461 . repeat_region 1441 2920 . ? . description=dust scaffold_1461 ensembl protein_coding_gene 12 618 . - . ID=Phyra87016;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1461000001;logic_name=jgi_phyra1 scaffold_1461 ensembl transcript 12 618 . - . ID=Phyra87016;Parent=Phyra87016;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1461 . CDS 12 618 . - 0 ID=Phyra87016;Parent=Phyra87016;rank=1 scaffold_1461 . exon 12 618 . - . ID=Phyra87016.1;Parent=Phyra87016;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1461 ensembl protein_coding_gene 2993 3664 . + . ID=Phyra87017;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1461000002;logic_name=jgi_phyra1 scaffold_1461 ensembl transcript 2993 3664 . + . ID=Phyra87017;Parent=Phyra87017;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1461 . CDS 2993 3664 . + 0 ID=Phyra87017;Parent=Phyra87017;rank=1 scaffold_1461 . exon 2993 3664 . + . ID=Phyra87017.1;Parent=Phyra87017;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1395 1 5000 scaffold_1395 . biological_region 2002 2003 0.999 - . logic_name=eponine scaffold_1395 . biological_region 2496 2497 0.999 - . logic_name=eponine scaffold_1395 . repeat_region 3233 3245 . ? . description=dust scaffold_1395 ensembl protein_coding_gene 99 884 . + . ID=Phyra86939;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1395000001;logic_name=jgi_phyra1 scaffold_1395 ensembl transcript 99 884 . + . ID=Phyra86939;Parent=Phyra86939;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1395 . CDS 99 884 . + 0 ID=Phyra86939;Parent=Phyra86939;rank=1 scaffold_1395 . exon 99 884 . + . ID=Phyra86939.1;Parent=Phyra86939;constitutive=1;rank=1 scaffold_1395 ensembl protein_coding_gene 1362 3095 . - . ID=Phyra86940;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1395000002;logic_name=jgi_phyra1 scaffold_1395 ensembl transcript 1362 3095 . - . ID=Phyra86940;Parent=Phyra86940;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1395 . CDS 1362 3095 . - 0 ID=Phyra86940;Parent=Phyra86940;rank=1 scaffold_1395 . exon 1362 3095 . - . ID=Phyra86940.1;Parent=Phyra86940;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1401 1 5009 scaffold_1401 . repeat_region 909 955 . ? . description=trf scaffold_1401 . repeat_region 1873 2068 . + . description=Sola3-2_PS scaffold_1401 . repeat_region 3376 3425 . ? . description=dust scaffold_1401 . biological_region 3796 3800 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1398 1 5012 scaffold_1398 . repeat_region 1732 1781 . ? . description=dust scaffold_1398 . repeat_region 3452 3460 . ? . description=dust scaffold_1398 ensembl protein_coding_gene 2337 3389 . + . ID=Phyra72472;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1398000001;logic_name=jgi_phyra1 scaffold_1398 ensembl transcript 2337 3389 . + . ID=Phyra72472;Parent=Phyra72472;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1398 . CDS 2337 3389 . + 0 ID=Phyra72472;Parent=Phyra72472;rank=1 scaffold_1398 . exon 2337 3389 . + . ID=Phyra72472.1;Parent=Phyra72472;constitutive=1;rank=1 scaffold_1398 ensembl protein_coding_gene 6 1314 . - . ID=Phyra86944;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1398000001;logic_name=jgi_phyra1 scaffold_1398 ensembl transcript 6 1314 . - . ID=Phyra86944;Parent=Phyra86944;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1398 . CDS 6 739 . - 0 ID=Phyra86944;Parent=Phyra86944;rank=4 scaffold_1398 . exon 6 739 . - . ID=Phyra86944.4;Parent=Phyra86944;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_1398 . CDS 778 947 . - 0 ID=Phyra86944;Parent=Phyra86944;rank=3 scaffold_1398 . exon 778 947 . - . ID=Phyra86944.3;Parent=Phyra86944;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1398 . CDS 969 1087 . - 0 ID=Phyra86944;Parent=Phyra86944;rank=2 scaffold_1398 . exon 969 1087 . - . ID=Phyra86944.2;Parent=Phyra86944;constitutive=1;ensembl_phase=1;rank=2 scaffold_1398 . CDS 1107 1314 . - 0 ID=Phyra86944;Parent=Phyra86944;rank=1 scaffold_1398 . exon 1107 1314 . - . ID=Phyra86944.1;Parent=Phyra86944;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1394 1 5016 scaffold_1394 . repeat_region 2440 3225 . ? . description=dust scaffold_1394 . biological_region 3453 3458 0.999 + . logic_name=eponine scaffold_1394 . biological_region 3504 3511 0.999 - . logic_name=eponine scaffold_1394 . biological_region 3566 3567 0.999 - . logic_name=eponine scaffold_1394 . biological_region 3598 3604 0.999 - . logic_name=eponine scaffold_1394 . biological_region 4896 4899 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1390 1 5028 scaffold_1390 . repeat_region 191 200 . ? . description=dust scaffold_1390 . repeat_region 4187 4198 . ? . description=dust scaffold_1390 . repeat_region 4831 5012 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1391 1 5030 scaffold_1391 . repeat_region 907 949 . ? . description=dust scaffold_1391 . repeat_region 1701 1717 . ? . description=dust scaffold_1391 . biological_region 4475 4477 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1389 1 5041 scaffold_1389 . repeat_region 528 579 . ? . description=trf scaffold_1389 . repeat_region 962 1006 . ? . description=trf scaffold_1389 . biological_region 4557 4557 0.999 - . logic_name=eponine scaffold_1389 . biological_region 4568 4570 0.999 + . logic_name=eponine scaffold_1389 . biological_region 4591 4594 0.999 + . logic_name=eponine scaffold_1389 . biological_region 4634 4639 0.999 - . logic_name=eponine scaffold_1389 ensembl protein_coding_gene 1642 2649 . - . ID=Phyra41442;biotype=protein_coding;external_name=gwEuk.1389.5.1;logic_name=jgi_phyra1 scaffold_1389 ensembl transcript 1642 2649 . - . ID=Phyra41442;Parent=Phyra41442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1389 . CDS 1642 2649 . - 0 ID=Phyra41442;Parent=Phyra41442;rank=1 scaffold_1389 . exon 1642 2649 . - . ID=Phyra41442.1;Parent=Phyra41442;constitutive=1;rank=1 scaffold_1389 ensembl protein_coding_gene 3535 4722 . - . ID=Phyra86935;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1389000002;logic_name=jgi_phyra1 scaffold_1389 ensembl transcript 3535 4722 . - . ID=Phyra86935;Parent=Phyra86935;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1389 . CDS 3535 4722 . - 0 ID=Phyra86935;Parent=Phyra86935;rank=1 scaffold_1389 . exon 3535 4722 . - . ID=Phyra86935.1;Parent=Phyra86935;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1388 1 5043 scaffold_1388 . repeat_region 336 343 . ? . description=dust scaffold_1388 . biological_region 571 576 0.999 - . logic_name=eponine scaffold_1388 . biological_region 2021 2022 0.999 - . logic_name=eponine scaffold_1388 ensembl protein_coding_gene 826 2754 . + . ID=Phyra86932;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1388000001;logic_name=jgi_phyra1 scaffold_1388 ensembl transcript 826 2754 . + . ID=Phyra86932;Parent=Phyra86932;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1388 . CDS 826 2754 . + 0 ID=Phyra86932;Parent=Phyra86932;rank=1 scaffold_1388 . exon 826 2754 . + . ID=Phyra86932.1;Parent=Phyra86932;constitutive=1;rank=1 scaffold_1388 ensembl protein_coding_gene 2996 4954 . - . ID=Phyra86933;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1388000002;logic_name=jgi_phyra1 scaffold_1388 ensembl transcript 2996 4954 . - . ID=Phyra86933;Parent=Phyra86933;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1388 . CDS 2996 4954 . - 0 ID=Phyra86933;Parent=Phyra86933;rank=1 scaffold_1388 . exon 2996 4954 . - . ID=Phyra86933.1;Parent=Phyra86933;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1387 1 5046 scaffold_1387 . repeat_region 1 412 . - . description=GypsyPi-1c_I-int scaffold_1387 . biological_region 944 948 0.999 - . logic_name=eponine scaffold_1387 . biological_region 1019 1023 0.999 + . logic_name=eponine scaffold_1387 . biological_region 1047 1050 0.999 - . logic_name=eponine scaffold_1387 . biological_region 1098 1102 0.999 - . logic_name=eponine scaffold_1387 . biological_region 1370 1370 0.999 + . logic_name=eponine scaffold_1387 . repeat_region 1459 2574 . ? . description=dust scaffold_1387 . repeat_region 3569 3931 . ? . description=dust scaffold_1387 ensembl protein_coding_gene 44 1057 . - . ID=Phyra86931;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1387000001;logic_name=jgi_phyra1 scaffold_1387 ensembl transcript 44 1057 . - . ID=Phyra86931;Parent=Phyra86931;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1387 . CDS 44 1057 . - 0 ID=Phyra86931;Parent=Phyra86931;rank=1 scaffold_1387 . exon 44 1057 . - . ID=Phyra86931.1;Parent=Phyra86931;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1439 1 5053 scaffold_1439 . repeat_region 2480 2488 . ? . description=dust scaffold_1439 . repeat_region 2555 3521 . ? . description=dust scaffold_1439 . biological_region 4493 4496 0.999 + . logic_name=eponine scaffold_1439 . biological_region 4837 4840 0.999 - . logic_name=eponine scaffold_1439 ensembl protein_coding_gene 3935 5050 . + . ID=Phyra86996;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1439000001;logic_name=jgi_phyra1 scaffold_1439 ensembl transcript 3935 5050 . + . ID=Phyra86996;Parent=Phyra86996;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1439 . CDS 3935 4153 . + 0 ID=Phyra86996;Parent=Phyra86996;rank=1 scaffold_1439 . exon 3935 4153 . + . ID=Phyra86996.1;Parent=Phyra86996;constitutive=1;rank=1 scaffold_1439 . CDS 4256 5050 . + 0 ID=Phyra86996;Parent=Phyra86996;rank=2 scaffold_1439 . exon 4256 5050 . + . ID=Phyra86996.2;Parent=Phyra86996;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1413 1 5068 scaffold_1413 . repeat_region 1166 2933 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1384 1 5076 scaffold_1384 . repeat_region 972 991 . ? . description=trf scaffold_1384 . repeat_region 1618 1641 . ? . description=dust scaffold_1384 . repeat_region 3674 3684 . ? . description=dust scaffold_1384 . biological_region 4845 4845 0.999 + . logic_name=eponine scaffold_1384 . biological_region 4904 4909 0.999 + . logic_name=eponine scaffold_1384 . repeat_region 4929 4985 . ? . description=dust scaffold_1384 . biological_region 4977 4981 0.999 - . logic_name=eponine scaffold_1384 ensembl protein_coding_gene 1273 2075 . + . ID=Phyra72470;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1384000001;logic_name=jgi_phyra1 scaffold_1384 ensembl transcript 1273 2075 . + . ID=Phyra72470;Parent=Phyra72470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1384 . CDS 1273 1301 . + 0 ID=Phyra72470;Parent=Phyra72470;rank=1 scaffold_1384 . exon 1273 1301 . + . ID=Phyra72470.1;Parent=Phyra72470;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1384 . CDS 1380 1607 . + 0 ID=Phyra72470;Parent=Phyra72470;rank=2 scaffold_1384 . exon 1380 1607 . + . ID=Phyra72470.2;Parent=Phyra72470;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1384 . CDS 1667 1832 . + 0 ID=Phyra72470;Parent=Phyra72470;rank=3 scaffold_1384 . exon 1667 1832 . + . ID=Phyra72470.3;Parent=Phyra72470;constitutive=1;ensembl_phase=2;rank=3 scaffold_1384 . CDS 1911 2075 . + 0 ID=Phyra72470;Parent=Phyra72470;rank=4 scaffold_1384 . exon 1911 2075 . + . ID=Phyra72470.4;Parent=Phyra72470;constitutive=1;rank=4 scaffold_1384 ensembl protein_coding_gene 407 976 . + . ID=Phyra86923;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1384000001;logic_name=jgi_phyra1 scaffold_1384 ensembl transcript 407 976 . + . ID=Phyra86923;Parent=Phyra86923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1384 . CDS 407 494 . + 0 ID=Phyra86923;Parent=Phyra86923;rank=1 scaffold_1384 . exon 407 494 . + . ID=Phyra86923.1;Parent=Phyra86923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1384 . CDS 529 708 . + 0 ID=Phyra86923;Parent=Phyra86923;rank=2 scaffold_1384 . exon 529 708 . + . ID=Phyra86923.2;Parent=Phyra86923;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1384 . CDS 765 869 . + 0 ID=Phyra86923;Parent=Phyra86923;rank=3 scaffold_1384 . exon 765 869 . + . ID=Phyra86923.3;Parent=Phyra86923;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1384 . CDS 951 976 . + 0 ID=Phyra86923;Parent=Phyra86923;rank=4 scaffold_1384 . exon 951 976 . + . ID=Phyra86923.4;Parent=Phyra86923;constitutive=1;ensembl_phase=1;rank=4 scaffold_1384 ensembl protein_coding_gene 2308 3595 . + . ID=Phyra86925;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1384000003;logic_name=jgi_phyra1 scaffold_1384 ensembl transcript 2308 3595 . + . ID=Phyra86925;Parent=Phyra86925;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1384 . CDS 2308 2470 . + 0 ID=Phyra86925;Parent=Phyra86925;rank=1 scaffold_1384 . exon 2308 2470 . + . ID=Phyra86925.1;Parent=Phyra86925;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1384 . CDS 2534 2680 . + 0 ID=Phyra86925;Parent=Phyra86925;rank=2 scaffold_1384 . exon 2534 2680 . + . ID=Phyra86925.2;Parent=Phyra86925;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1384 . CDS 2749 2882 . + 0 ID=Phyra86925;Parent=Phyra86925;rank=3 scaffold_1384 . exon 2749 2882 . + . ID=Phyra86925.3;Parent=Phyra86925;constitutive=1;ensembl_phase=1;rank=3 scaffold_1384 . CDS 2952 3068 . + 0 ID=Phyra86925;Parent=Phyra86925;rank=4 scaffold_1384 . exon 2952 3068 . + . ID=Phyra86925.4;Parent=Phyra86925;constitutive=1;rank=4 scaffold_1384 . CDS 3131 3595 . + 0 ID=Phyra86925;Parent=Phyra86925;rank=5 scaffold_1384 . exon 3131 3595 . + . ID=Phyra86925.5;Parent=Phyra86925;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_1382 1 5083 scaffold_1382 . biological_region 926 934 0.999 - . logic_name=eponine scaffold_1382 . biological_region 953 955 0.999 + . logic_name=eponine scaffold_1382 . biological_region 969 974 0.999 - . logic_name=eponine scaffold_1382 . biological_region 1006 1007 0.999 + . logic_name=eponine scaffold_1382 . biological_region 1062 1067 0.999 + . logic_name=eponine scaffold_1382 . biological_region 1098 1104 0.999 + . logic_name=eponine scaffold_1382 . biological_region 1201 1202 0.999 - . logic_name=eponine scaffold_1382 . biological_region 1232 1235 0.999 - . logic_name=eponine scaffold_1382 ensembl protein_coding_gene 838 1389 . + . ID=Phyra86920;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1382000001;logic_name=jgi_phyra1 scaffold_1382 ensembl transcript 838 1389 . + . ID=Phyra86920;Parent=Phyra86920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1382 . CDS 838 1389 . + 0 ID=Phyra86920;Parent=Phyra86920;rank=1 scaffold_1382 . exon 838 1389 . + . ID=Phyra86920.1;Parent=Phyra86920;constitutive=1;rank=1 scaffold_1382 ensembl protein_coding_gene 2804 4342 . + . ID=Phyra86921;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1382000002;logic_name=jgi_phyra1 scaffold_1382 ensembl transcript 2804 4342 . + . ID=Phyra86921;Parent=Phyra86921;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1382 . CDS 2804 4342 . + 0 ID=Phyra86921;Parent=Phyra86921;rank=1 scaffold_1382 . exon 2804 4342 . + . ID=Phyra86921.1;Parent=Phyra86921;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1393 1 5084 scaffold_1393 . biological_region 54 57 0.999 + . logic_name=eponine scaffold_1393 . repeat_region 89 107 . ? . description=dust scaffold_1393 . repeat_region 2094 2136 . ? . description=trf scaffold_1393 ensembl protein_coding_gene 16 671 . - . ID=Phyra86937;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1393000001;logic_name=jgi_phyra1 scaffold_1393 ensembl transcript 16 671 . - . ID=Phyra86937;Parent=Phyra86937;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1393 . CDS 16 192 . - 0 ID=Phyra86937;Parent=Phyra86937;rank=4 scaffold_1393 . exon 16 192 . - . ID=Phyra86937.4;Parent=Phyra86937;constitutive=1;rank=4 scaffold_1393 . CDS 272 337 . - 0 ID=Phyra86937;Parent=Phyra86937;rank=3 scaffold_1393 . exon 272 337 . - . ID=Phyra86937.3;Parent=Phyra86937;constitutive=1;rank=3 scaffold_1393 . CDS 445 607 . - 0 ID=Phyra86937;Parent=Phyra86937;rank=2 scaffold_1393 . exon 445 607 . - . ID=Phyra86937.2;Parent=Phyra86937;constitutive=1;ensembl_phase=2;rank=2 scaffold_1393 . CDS 652 671 . - 0 ID=Phyra86937;Parent=Phyra86937;rank=1 scaffold_1393 . exon 652 671 . - . ID=Phyra86937.1;Parent=Phyra86937;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1393 ensembl protein_coding_gene 2187 5062 . - . ID=Phyra86938;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1393000002;logic_name=jgi_phyra1 scaffold_1393 ensembl transcript 2187 5062 . - . ID=Phyra86938;Parent=Phyra86938;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1393 . CDS 2187 2513 . - 0 ID=Phyra86938;Parent=Phyra86938;rank=2 scaffold_1393 . exon 2187 2513 . - . ID=Phyra86938.2;Parent=Phyra86938;constitutive=1;rank=2 scaffold_1393 . CDS 2540 5062 . - 0 ID=Phyra86938;Parent=Phyra86938;rank=1 scaffold_1393 . exon 2540 5062 . - . ID=Phyra86938.1;Parent=Phyra86938;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1381 1 5098 scaffold_1381 . repeat_region 102 146 . ? . description=trf scaffold_1381 . repeat_region 530 1405 . - . description=GypsyPi-1c_I-int scaffold_1381 . repeat_region 2232 2819 . ? . description=dust scaffold_1381 ensembl protein_coding_gene 1107 1297 . - . ID=Phyra41415;biotype=protein_coding;external_name=gwEuk.1381.2.1;logic_name=jgi_phyra1 scaffold_1381 ensembl transcript 1107 1297 . - . ID=Phyra41415;Parent=Phyra41415;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1381 . CDS 1107 1297 . - 0 ID=Phyra41415;Parent=Phyra41415;rank=1 scaffold_1381 . exon 1107 1297 . - . ID=Phyra41415.1;Parent=Phyra41415;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1381 ensembl protein_coding_gene 3369 4925 . + . ID=Phyra86919;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1381000001;logic_name=jgi_phyra1 scaffold_1381 ensembl transcript 3369 4925 . + . ID=Phyra86919;Parent=Phyra86919;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1381 . CDS 3369 4925 . + 0 ID=Phyra86919;Parent=Phyra86919;rank=1 scaffold_1381 . exon 3369 4925 . + . ID=Phyra86919.1;Parent=Phyra86919;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1378 1 5123 scaffold_1378 . repeat_region 3510 4231 . ? . description=dust scaffold_1378 ensembl protein_coding_gene 3314 3499 . + . ID=Phyra41407;biotype=protein_coding;external_name=gwEuk.1378.5.1;logic_name=jgi_phyra1 scaffold_1378 ensembl transcript 3314 3499 . + . ID=Phyra41407;Parent=Phyra41407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1378 . CDS 3314 3499 . + 0 ID=Phyra41407;Parent=Phyra41407;rank=1 scaffold_1378 . exon 3314 3499 . + . ID=Phyra41407.1;Parent=Phyra41407;constitutive=1;rank=1 scaffold_1378 ensembl protein_coding_gene 191 2273 . + . ID=Phyra86914;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1378000001;logic_name=jgi_phyra1 scaffold_1378 ensembl transcript 191 2273 . + . ID=Phyra86914;Parent=Phyra86914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1378 . CDS 191 2120 . + 0 ID=Phyra86914;Parent=Phyra86914;rank=1 scaffold_1378 . exon 191 2120 . + . ID=Phyra86914.1;Parent=Phyra86914;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1378 . CDS 2227 2273 . + 0 ID=Phyra86914;Parent=Phyra86914;rank=2 scaffold_1378 . exon 2227 2273 . + . ID=Phyra86914.2;Parent=Phyra86914;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1379 1 5124 scaffold_1379 . repeat_region 405 497 . ? . description=trf scaffold_1379 . repeat_region 943 1987 . ? . description=dust scaffold_1379 . biological_region 2366 2369 0.999 + . logic_name=eponine scaffold_1379 . biological_region 4819 4819 0.999 + . logic_name=eponine scaffold_1379 ensembl protein_coding_gene 2173 2986 . + . ID=Phyra86915;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1379000001;logic_name=jgi_phyra1 scaffold_1379 ensembl transcript 2173 2986 . + . ID=Phyra86915;Parent=Phyra86915;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1379 . CDS 2173 2813 . + 0 ID=Phyra86915;Parent=Phyra86915;rank=1 scaffold_1379 . exon 2173 2813 . + . ID=Phyra86915.1;Parent=Phyra86915;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1379 . CDS 2890 2986 . + 0 ID=Phyra86915;Parent=Phyra86915;rank=2 scaffold_1379 . exon 2890 2986 . + . ID=Phyra86915.2;Parent=Phyra86915;constitutive=1;ensembl_phase=2;rank=2 scaffold_1379 ensembl protein_coding_gene 3704 5027 . - . ID=Phyra86916;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1379000002;logic_name=jgi_phyra1 scaffold_1379 ensembl transcript 3704 5027 . - . ID=Phyra86916;Parent=Phyra86916;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1379 . CDS 3704 3757 . - 0 ID=Phyra86916;Parent=Phyra86916;rank=2 scaffold_1379 . exon 3704 3757 . - . ID=Phyra86916.2;Parent=Phyra86916;constitutive=1;rank=2 scaffold_1379 . CDS 3807 5027 . - 0 ID=Phyra86916;Parent=Phyra86916;rank=1 scaffold_1379 . exon 3807 5027 . - . ID=Phyra86916.1;Parent=Phyra86916;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1375 1 5138 scaffold_1375 ensembl protein_coding_gene 728 2710 . - . ID=Phyra86911;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1375000001;logic_name=jgi_phyra1 scaffold_1375 ensembl transcript 728 2710 . - . ID=Phyra86911;Parent=Phyra86911;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1375 . CDS 728 2710 . - 0 ID=Phyra86911;Parent=Phyra86911;rank=1 scaffold_1375 . exon 728 2710 . - . ID=Phyra86911.1;Parent=Phyra86911;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1377 1 5153 scaffold_1377 . repeat_region 867 874 . ? . description=dust scaffold_1377 . repeat_region 2519 3239 . ? . description=dust scaffold_1377 . repeat_region 3764 3792 . ? . description=trf scaffold_1377 . biological_region 4452 4455 0.999 + . logic_name=eponine scaffold_1377 . biological_region 4552 4556 0.999 + . logic_name=eponine scaffold_1377 ensembl protein_coding_gene 3836 4811 . + . ID=Phyra86913;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1377000001;logic_name=jgi_phyra1 scaffold_1377 ensembl transcript 3836 4811 . + . ID=Phyra86913;Parent=Phyra86913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1377 . CDS 3836 4039 . + 0 ID=Phyra86913;Parent=Phyra86913;rank=1 scaffold_1377 . exon 3836 4039 . + . ID=Phyra86913.1;Parent=Phyra86913;constitutive=1;rank=1 scaffold_1377 . CDS 4106 4244 . + 0 ID=Phyra86913;Parent=Phyra86913;rank=2 scaffold_1377 . exon 4106 4244 . + . ID=Phyra86913.2;Parent=Phyra86913;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1377 . CDS 4315 4811 . + 0 ID=Phyra86913;Parent=Phyra86913;rank=3 scaffold_1377 . exon 4315 4811 . + . ID=Phyra86913.3;Parent=Phyra86913;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1343 1 5154 scaffold_1343 . repeat_region 1106 1872 . ? . description=dust scaffold_1343 . repeat_region 2511 2576 . ? . description=trf scaffold_1343 ensembl protein_coding_gene 2331 2861 . + . ID=Phyra86871;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1343000001;logic_name=jgi_phyra1 scaffold_1343 ensembl transcript 2331 2861 . + . ID=Phyra86871;Parent=Phyra86871;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1343 . CDS 2331 2861 . + 0 ID=Phyra86871;Parent=Phyra86871;rank=1 scaffold_1343 . exon 2331 2861 . + . ID=Phyra86871.1;Parent=Phyra86871;constitutive=1;rank=1 scaffold_1343 ensembl protein_coding_gene 3271 4056 . + . ID=Phyra86872;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1343000002;logic_name=jgi_phyra1 scaffold_1343 ensembl transcript 3271 4056 . + . ID=Phyra86872;Parent=Phyra86872;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1343 . CDS 3271 4056 . + 0 ID=Phyra86872;Parent=Phyra86872;rank=1 scaffold_1343 . exon 3271 4056 . + . ID=Phyra86872.1;Parent=Phyra86872;constitutive=1;rank=1 scaffold_1343 ensembl protein_coding_gene 4497 4962 . + . ID=Phyra86873;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1343000003;logic_name=jgi_phyra1 scaffold_1343 ensembl transcript 4497 4962 . + . ID=Phyra86873;Parent=Phyra86873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1343 . CDS 4497 4827 . + 0 ID=Phyra86873;Parent=Phyra86873;rank=1 scaffold_1343 . exon 4497 4827 . + . ID=Phyra86873.1;Parent=Phyra86873;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1343 . CDS 4892 4962 . + 0 ID=Phyra86873;Parent=Phyra86873;rank=2 scaffold_1343 . exon 4892 4962 . + . ID=Phyra86873.2;Parent=Phyra86873;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1373 1 5155 scaffold_1373 . repeat_region 1111 1878 . ? . description=dust scaffold_1373 ensembl protein_coding_gene 305 911 . + . ID=Phyra86907;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1373000001;logic_name=jgi_phyra1 scaffold_1373 ensembl transcript 305 911 . + . ID=Phyra86907;Parent=Phyra86907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1373 . CDS 305 607 . + 0 ID=Phyra86907;Parent=Phyra86907;rank=1 scaffold_1373 . exon 305 607 . + . ID=Phyra86907.1;Parent=Phyra86907;constitutive=1;rank=1 scaffold_1373 . CDS 738 911 . + 0 ID=Phyra86907;Parent=Phyra86907;rank=2 scaffold_1373 . exon 738 911 . + . ID=Phyra86907.2;Parent=Phyra86907;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1376 1 5156 scaffold_1376 . repeat_region 1927 3002 . ? . description=dust scaffold_1376 ensembl protein_coding_gene 809 1752 . + . ID=Phyra86912;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1376000001;logic_name=jgi_phyra1 scaffold_1376 ensembl transcript 809 1752 . + . ID=Phyra86912;Parent=Phyra86912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1376 . CDS 809 1688 . + 0 ID=Phyra86912;Parent=Phyra86912;rank=1 scaffold_1376 . exon 809 1688 . + . ID=Phyra86912.1;Parent=Phyra86912;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1376 . CDS 1748 1752 . + 0 ID=Phyra86912;Parent=Phyra86912;rank=2 scaffold_1376 . exon 1748 1752 . + . ID=Phyra86912.2;Parent=Phyra86912;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1374 1 5158 scaffold_1374 . repeat_region 1397 1421 . ? . description=trf scaffold_1374 . repeat_region 1689 1725 . ? . description=trf scaffold_1374 . biological_region 1878 1879 0.999 + . logic_name=eponine scaffold_1374 . biological_region 1965 1968 0.999 + . logic_name=eponine scaffold_1374 . biological_region 2644 2645 0.999 - . logic_name=eponine scaffold_1374 . repeat_region 3156 4229 . ? . description=dust scaffold_1374 ensembl protein_coding_gene 483 1374 . + . ID=Phyra86908;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1374000001;logic_name=jgi_phyra1 scaffold_1374 ensembl transcript 483 1374 . + . ID=Phyra86908;Parent=Phyra86908;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1374 . CDS 483 912 . + 0 ID=Phyra86908;Parent=Phyra86908;rank=1 scaffold_1374 . exon 483 912 . + . ID=Phyra86908.1;Parent=Phyra86908;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1374 . CDS 953 1374 . + 0 ID=Phyra86908;Parent=Phyra86908;rank=2 scaffold_1374 . exon 953 1374 . + . ID=Phyra86908.2;Parent=Phyra86908;constitutive=1;ensembl_phase=1;rank=2 scaffold_1374 ensembl protein_coding_gene 2121 2948 . + . ID=Phyra86909;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1374000002;logic_name=jgi_phyra1 scaffold_1374 ensembl transcript 2121 2948 . + . ID=Phyra86909;Parent=Phyra86909;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1374 . CDS 2121 2948 . + 0 ID=Phyra86909;Parent=Phyra86909;rank=1 scaffold_1374 . exon 2121 2948 . + . ID=Phyra86909.1;Parent=Phyra86909;constitutive=1;rank=1 scaffold_1374 ensembl protein_coding_gene 4269 4658 . + . ID=Phyra86910;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1374000003;logic_name=jgi_phyra1 scaffold_1374 ensembl transcript 4269 4658 . + . ID=Phyra86910;Parent=Phyra86910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1374 . CDS 4269 4658 . + 0 ID=Phyra86910;Parent=Phyra86910;rank=1 scaffold_1374 . exon 4269 4658 . + . ID=Phyra86910.1;Parent=Phyra86910;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1380 1 5163 scaffold_1380 . repeat_region 904 1631 . ? . description=dust scaffold_1380 . repeat_region 3834 4049 . ? . description=dust scaffold_1380 ensembl protein_coding_gene 221 2556 . + . ID=Phyra86917;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1380000001;logic_name=jgi_phyra1 scaffold_1380 ensembl transcript 221 2556 . + . ID=Phyra86917;Parent=Phyra86917;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1380 . CDS 221 787 . + 0 ID=Phyra86917;Parent=Phyra86917;rank=1 scaffold_1380 . exon 221 787 . + . ID=Phyra86917.1;Parent=Phyra86917;constitutive=1;rank=1 scaffold_1380 . CDS 1702 2556 . + 0 ID=Phyra86917;Parent=Phyra86917;rank=2 scaffold_1380 . exon 1702 2556 . + . ID=Phyra86917.2;Parent=Phyra86917;constitutive=1;rank=2 scaffold_1380 ensembl protein_coding_gene 4085 5155 . + . ID=Phyra86918;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1380000002;logic_name=jgi_phyra1 scaffold_1380 ensembl transcript 4085 5155 . + . ID=Phyra86918;Parent=Phyra86918;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1380 . CDS 4085 5155 . + 0 ID=Phyra86918;Parent=Phyra86918;rank=1 scaffold_1380 . exon 4085 5155 . + . ID=Phyra86918.1;Parent=Phyra86918;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1424 1 5204 scaffold_1424 . repeat_region 49 242 . - . description=GypsyPi-1c_I-int scaffold_1424 . biological_region 314 314 0.999 + . logic_name=eponine scaffold_1424 . repeat_region 507 577 . - . description=GypsyPi-1c_I-int scaffold_1424 . repeat_region 1459 2948 . ? . description=dust scaffold_1424 . repeat_region 2949 3322 . - . description=GypsyPi-1c_I-int scaffold_1424 . repeat_region 3323 3625 . - . description=GypsyPi-1c_LTR scaffold_1424 . repeat_region 4695 4764 . - . description=GypsyPi-1c_I-int scaffold_1424 . repeat_region 4901 4973 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1368 1 5216 scaffold_1368 . repeat_region 1964 3354 . ? . description=dust scaffold_1368 ensembl protein_coding_gene 3657 4622 . - . ID=Phyra72469;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1368000001;logic_name=jgi_phyra1 scaffold_1368 ensembl transcript 3657 4622 . - . ID=Phyra72469;Parent=Phyra72469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1368 . CDS 3657 4622 . - 0 ID=Phyra72469;Parent=Phyra72469;rank=1 scaffold_1368 . exon 3657 4622 . - . ID=Phyra72469.1;Parent=Phyra72469;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1367 1 5220 scaffold_1367 . repeat_region 1235 1260 . ? . description=trf scaffold_1367 . repeat_region 1503 1552 . ? . description=dust scaffold_1367 . repeat_region 1574 1752 . ? . description=trf scaffold_1367 . repeat_region 2179 2295 . ? . description=trf scaffold_1367 . repeat_region 2866 2891 . ? . description=trf scaffold_1367 . repeat_region 4315 4400 . ? . description=trf scaffold_1367 . repeat_region 4356 4421 . ? . description=trf scaffold_1367 ensembl protein_coding_gene 2046 2489 . - . ID=Phyra86903;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1367000001;logic_name=jgi_phyra1 scaffold_1367 ensembl transcript 2046 2489 . - . ID=Phyra86903;Parent=Phyra86903;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1367 . CDS 2046 2489 . - 0 ID=Phyra86903;Parent=Phyra86903;rank=1 scaffold_1367 . exon 2046 2489 . - . ID=Phyra86903.1;Parent=Phyra86903;constitutive=1;rank=1 scaffold_1367 ensembl protein_coding_gene 4069 4554 . + . ID=Phyra86904;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1367000002;logic_name=jgi_phyra1 scaffold_1367 ensembl transcript 4069 4554 . + . ID=Phyra86904;Parent=Phyra86904;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1367 . CDS 4069 4554 . + 0 ID=Phyra86904;Parent=Phyra86904;rank=1 scaffold_1367 . exon 4069 4554 . + . ID=Phyra86904.1;Parent=Phyra86904;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1371 1 5240 scaffold_1371 . repeat_region 267 1316 . - . description=Polinton-1_PI scaffold_1371 . repeat_region 1332 1768 . ? . description=dust scaffold_1371 . repeat_region 1769 3113 . - . description=Polinton-1_PI scaffold_1371 . repeat_region 3185 3234 . ? . description=dust scaffold_1371 . repeat_region 3235 3837 . - . description=Polinton-1_PI scaffold_1371 . repeat_region 3869 5073 . - . description=Polinton-1_PI scaffold_1371 . repeat_region 4156 4165 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1370 1 5249 scaffold_1370 . repeat_region 1393 1442 . ? . description=dust scaffold_1370 . biological_region 2047 2051 0.999 + . logic_name=eponine scaffold_1370 . biological_region 2854 2854 0.999 + . logic_name=eponine scaffold_1370 . biological_region 2956 2957 0.999 + . logic_name=eponine scaffold_1370 ensembl protein_coding_gene 3964 5231 . + . ID=Phyra86906;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1370000001;logic_name=jgi_phyra1 scaffold_1370 ensembl transcript 3964 5231 . + . ID=Phyra86906;Parent=Phyra86906;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1370 . CDS 3964 4175 . + 0 ID=Phyra86906;Parent=Phyra86906;rank=1 scaffold_1370 . exon 3964 4175 . + . ID=Phyra86906.1;Parent=Phyra86906;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1370 . CDS 4240 5231 . + 0 ID=Phyra86906;Parent=Phyra86906;rank=2 scaffold_1370 . exon 4240 5231 . + . ID=Phyra86906.2;Parent=Phyra86906;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1369 1 5258 scaffold_1369 . repeat_region 3180 3187 . ? . description=dust scaffold_1369 . repeat_region 3570 3721 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1366 1 5266 scaffold_1366 . repeat_region 20 78 . ? . description=dust scaffold_1366 . repeat_region 54 78 . ? . description=trf scaffold_1366 . repeat_region 508 592 . ? . description=trf scaffold_1366 . repeat_region 1071 1103 . ? . description=trf scaffold_1366 . repeat_region 1116 1172 . ? . description=trf scaffold_1366 . biological_region 1379 1383 0.999 - . logic_name=eponine scaffold_1366 . biological_region 1823 1823 0.999 + . logic_name=eponine scaffold_1366 . biological_region 2146 2149 0.999 - . logic_name=eponine scaffold_1366 . repeat_region 2614 3106 . ? . description=dust scaffold_1366 . repeat_region 3158 3277 . ? . description=trf scaffold_1366 . repeat_region 3706 3730 . ? . description=trf scaffold_1366 . repeat_region 3706 3746 . ? . description=dust scaffold_1366 . repeat_region 4722 4771 . ? . description=dust scaffold_1366 . repeat_region 4747 4771 . ? . description=trf scaffold_1366 ensembl pseudogene 1834 2603 . + . ID=Phyra41396;biotype=pseudogene;external_name=gwEuk.1366.1.1;logic_name=jgi_phyra1 scaffold_1366 ensembl pseudogene 1834 2603 . + . ID=Phyra41396;Parent=Phyra41396;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1366 . exon 1834 1965 . + . ID=Phyra41396.1;Parent=Phyra41396;constitutive=1;rank=1 scaffold_1366 . exon 1988 2236 . + . ID=Phyra41396.2;Parent=Phyra41396;constitutive=1;rank=2 scaffold_1366 . exon 2304 2603 . + . ID=Phyra41396.3;Parent=Phyra41396;constitutive=1;rank=3 scaffold_1366 ensembl protein_coding_gene 85 882 . + . ID=Phyra86900;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1366000001;logic_name=jgi_phyra1 scaffold_1366 ensembl transcript 85 882 . + . ID=Phyra86900;Parent=Phyra86900;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1366 . CDS 85 882 . + 0 ID=Phyra86900;Parent=Phyra86900;rank=1 scaffold_1366 . exon 85 882 . + . ID=Phyra86900.1;Parent=Phyra86900;constitutive=1;rank=1 scaffold_1366 ensembl protein_coding_gene 4778 5246 . + . ID=Phyra86902;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1366000003;logic_name=jgi_phyra1 scaffold_1366 ensembl transcript 4778 5246 . + . ID=Phyra86902;Parent=Phyra86902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1366 . CDS 4778 5246 . + 0 ID=Phyra86902;Parent=Phyra86902;rank=1 scaffold_1366 . exon 4778 5246 . + . ID=Phyra86902.1;Parent=Phyra86902;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1365 1 5269 scaffold_1365 . biological_region 4609 4611 0.999 - . logic_name=eponine scaffold_1365 . biological_region 4633 4635 0.999 - . logic_name=eponine scaffold_1365 ensembl protein_coding_gene 38 418 . + . ID=Phyra86897;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1365000001;logic_name=jgi_phyra1 scaffold_1365 ensembl transcript 38 418 . + . ID=Phyra86897;Parent=Phyra86897;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1365 . CDS 38 418 . + 0 ID=Phyra86897;Parent=Phyra86897;rank=1 scaffold_1365 . exon 38 418 . + . ID=Phyra86897.1;Parent=Phyra86897;constitutive=1;rank=1 scaffold_1365 ensembl protein_coding_gene 2526 3162 . - . ID=Phyra86898;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1365000002;logic_name=jgi_phyra1 scaffold_1365 ensembl transcript 2526 3162 . - . ID=Phyra86898;Parent=Phyra86898;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1365 . CDS 2526 2898 . - 0 ID=Phyra86898;Parent=Phyra86898;rank=2 scaffold_1365 . exon 2526 2898 . - . ID=Phyra86898.2;Parent=Phyra86898;constitutive=1;ensembl_phase=2;rank=2 scaffold_1365 . CDS 2999 3162 . - 0 ID=Phyra86898;Parent=Phyra86898;rank=1 scaffold_1365 . exon 2999 3162 . - . ID=Phyra86898.1;Parent=Phyra86898;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1365 ensembl protein_coding_gene 3297 4016 . + . ID=Phyra86899;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1365000003;logic_name=jgi_phyra1 scaffold_1365 ensembl transcript 3297 4016 . + . ID=Phyra86899;Parent=Phyra86899;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1365 . CDS 3297 3785 . + 0 ID=Phyra86899;Parent=Phyra86899;rank=1 scaffold_1365 . exon 3297 3785 . + . ID=Phyra86899.1;Parent=Phyra86899;constitutive=1;rank=1 scaffold_1365 . CDS 3978 4016 . + 0 ID=Phyra86899;Parent=Phyra86899;rank=2 scaffold_1365 . exon 3978 4016 . + . ID=Phyra86899.2;Parent=Phyra86899;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1372 1 5288 scaffold_1372 . repeat_region 1732 2501 . ? . description=dust scaffold_1372 . repeat_region 3824 3870 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1334 1 5301 scaffold_1334 . biological_region 965 967 0.999 + . logic_name=eponine scaffold_1334 . biological_region 979 979 0.999 - . logic_name=eponine scaffold_1334 . biological_region 2230 2231 0.999 + . logic_name=eponine scaffold_1334 . biological_region 2469 2470 0.999 - . logic_name=eponine scaffold_1334 . repeat_region 3610 3798 . - . description=Polinton-1_PI scaffold_1334 . repeat_region 4632 4976 . - . description=Polinton-1_PI scaffold_1334 ensembl protein_coding_gene 24 1145 . + . ID=Phyra86855;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1334000001;logic_name=jgi_phyra1 scaffold_1334 ensembl transcript 24 1145 . + . ID=Phyra86855;Parent=Phyra86855;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1334 . CDS 24 1145 . + 0 ID=Phyra86855;Parent=Phyra86855;rank=1 scaffold_1334 . exon 24 1145 . + . ID=Phyra86855.1;Parent=Phyra86855;constitutive=1;rank=1 scaffold_1334 ensembl protein_coding_gene 1314 2602 . - . ID=Phyra86856;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1334000002;logic_name=jgi_phyra1 scaffold_1334 ensembl transcript 1314 2602 . - . ID=Phyra86856;Parent=Phyra86856;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1334 . CDS 1314 1352 . - 0 ID=Phyra86856;Parent=Phyra86856;rank=2 scaffold_1334 . exon 1314 1352 . - . ID=Phyra86856.2;Parent=Phyra86856;constitutive=1;rank=2 scaffold_1334 . CDS 1466 2602 . - 0 ID=Phyra86856;Parent=Phyra86856;rank=1 scaffold_1334 . exon 1466 2602 . - . ID=Phyra86856.1;Parent=Phyra86856;constitutive=1;rank=1 scaffold_1334 ensembl protein_coding_gene 2776 3658 . + . ID=Phyra86857;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1334000003;logic_name=jgi_phyra1 scaffold_1334 ensembl transcript 2776 3658 . + . ID=Phyra86857;Parent=Phyra86857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1334 . CDS 2776 3147 . + 0 ID=Phyra86857;Parent=Phyra86857;rank=1 scaffold_1334 . exon 2776 3147 . + . ID=Phyra86857.1;Parent=Phyra86857;constitutive=1;rank=1 scaffold_1334 . CDS 3176 3205 . + 0 ID=Phyra86857;Parent=Phyra86857;rank=2 scaffold_1334 . exon 3176 3205 . + . ID=Phyra86857.2;Parent=Phyra86857;constitutive=1;rank=2 scaffold_1334 . CDS 3263 3587 . + 0 ID=Phyra86857;Parent=Phyra86857;rank=3 scaffold_1334 . exon 3263 3587 . + . ID=Phyra86857.3;Parent=Phyra86857;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1334 . CDS 3654 3658 . + 0 ID=Phyra86857;Parent=Phyra86857;rank=4 scaffold_1334 . exon 3654 3658 . + . ID=Phyra86857.4;Parent=Phyra86857;constitutive=1;ensembl_phase=1;rank=4 ##gff-version 3 ##sequence-region scaffold_1356 1 5319 scaffold_1356 . repeat_region 1281 2747 . ? . description=dust scaffold_1356 . biological_region 3336 3339 0.999 - . logic_name=eponine scaffold_1356 . biological_region 3547 3548 0.999 + . logic_name=eponine scaffold_1356 . repeat_region 4081 4151 . - . description=GypsyPi-1c_I-int scaffold_1356 . repeat_region 4320 4359 . ? . description=trf scaffold_1356 . repeat_region 4320 4372 . ? . description=trf scaffold_1356 . repeat_region 4677 4780 . ? . description=trf scaffold_1356 . biological_region 4894 4897 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1358 1 5319 scaffold_1358 . biological_region 222 222 0.999 + . logic_name=eponine scaffold_1358 . repeat_region 2932 2945 . ? . description=dust scaffold_1358 ensembl protein_coding_gene 1702 2226 . - . ID=Phyra86887;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1358000001;logic_name=jgi_phyra1 scaffold_1358 ensembl transcript 1702 2226 . - . ID=Phyra86887;Parent=Phyra86887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1358 . CDS 1702 2226 . - 0 ID=Phyra86887;Parent=Phyra86887;rank=1 scaffold_1358 . exon 1702 2226 . - . ID=Phyra86887.1;Parent=Phyra86887;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1357 1 5325 scaffold_1357 . biological_region 2922 2922 0.999 - . logic_name=eponine scaffold_1357 ensembl protein_coding_gene 14 621 . - . ID=Phyra86885;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1357000001;logic_name=jgi_phyra1 scaffold_1357 ensembl transcript 14 621 . - . ID=Phyra86885;Parent=Phyra86885;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1357 . CDS 14 621 . - 0 ID=Phyra86885;Parent=Phyra86885;rank=1 scaffold_1357 . exon 14 621 . - . ID=Phyra86885.1;Parent=Phyra86885;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1357 ensembl protein_coding_gene 3895 5321 . + . ID=Phyra86886;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1357000002;logic_name=jgi_phyra1 scaffold_1357 ensembl transcript 3895 5321 . + . ID=Phyra86886;Parent=Phyra86886;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1357 . CDS 3895 5321 . + 0 ID=Phyra86886;Parent=Phyra86886;rank=1 scaffold_1357 . exon 3895 5321 . + . ID=Phyra86886.1;Parent=Phyra86886;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1355 1 5326 scaffold_1355 . repeat_region 1247 1955 . ? . description=dust scaffold_1355 . biological_region 3219 3221 0.999 + . logic_name=eponine scaffold_1355 . biological_region 3580 3582 0.999 + . logic_name=eponine scaffold_1355 . repeat_region 3802 4337 . ? . description=dust scaffold_1355 ensembl protein_coding_gene 2442 3767 . - . ID=Phyra86884;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1355000001;logic_name=jgi_phyra1 scaffold_1355 ensembl transcript 2442 3767 . - . ID=Phyra86884;Parent=Phyra86884;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1355 . CDS 2442 3767 . - 0 ID=Phyra86884;Parent=Phyra86884;rank=1 scaffold_1355 . exon 2442 3767 . - . ID=Phyra86884.1;Parent=Phyra86884;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1361 1 5330 scaffold_1361 . repeat_region 3411 3460 . ? . description=dust scaffold_1361 ensembl protein_coding_gene 59 2399 . - . ID=Phyra86891;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1361000001;logic_name=jgi_phyra1 scaffold_1361 ensembl transcript 59 2399 . - . ID=Phyra86891;Parent=Phyra86891;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1361 . CDS 59 2215 . - 0 ID=Phyra86891;Parent=Phyra86891;rank=2 scaffold_1361 . exon 59 2215 . - . ID=Phyra86891.2;Parent=Phyra86891;constitutive=1;rank=2 scaffold_1361 . CDS 2277 2399 . - 0 ID=Phyra86891;Parent=Phyra86891;rank=1 scaffold_1361 . exon 2277 2399 . - . ID=Phyra86891.1;Parent=Phyra86891;constitutive=1;rank=1 scaffold_1361 ensembl protein_coding_gene 3843 4214 . - . ID=Phyra86892;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1361000002;logic_name=jgi_phyra1 scaffold_1361 ensembl transcript 3843 4214 . - . ID=Phyra86892;Parent=Phyra86892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1361 . CDS 3843 4214 . - 0 ID=Phyra86892;Parent=Phyra86892;rank=1 scaffold_1361 . exon 3843 4214 . - . ID=Phyra86892.1;Parent=Phyra86892;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1354 1 5356 scaffold_1354 . biological_region 3535 3541 0.999 + . logic_name=eponine scaffold_1354 . biological_region 3571 3575 0.999 - . logic_name=eponine scaffold_1354 . biological_region 3945 3946 0.999 + . logic_name=eponine scaffold_1354 . biological_region 3949 3954 0.999 - . logic_name=eponine scaffold_1354 . repeat_region 5344 5356 . ? . description=dust scaffold_1354 ensembl protein_coding_gene 3456 4229 . - . ID=Phyra72468;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1354000001;logic_name=jgi_phyra1 scaffold_1354 ensembl transcript 3456 4229 . - . ID=Phyra72468;Parent=Phyra72468;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1354 . CDS 3456 4229 . - 0 ID=Phyra72468;Parent=Phyra72468;rank=1 scaffold_1354 . exon 3456 4229 . - . ID=Phyra72468.1;Parent=Phyra72468;constitutive=1;rank=1 scaffold_1354 ensembl protein_coding_gene 488 1357 . + . ID=Phyra86881;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1354000001;logic_name=jgi_phyra1 scaffold_1354 ensembl transcript 488 1357 . + . ID=Phyra86881;Parent=Phyra86881;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1354 . CDS 488 1357 . + 0 ID=Phyra86881;Parent=Phyra86881;rank=1 scaffold_1354 . exon 488 1357 . + . ID=Phyra86881.1;Parent=Phyra86881;constitutive=1;rank=1 scaffold_1354 ensembl protein_coding_gene 2459 3307 . - . ID=Phyra86882;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1354000002;logic_name=jgi_phyra1 scaffold_1354 ensembl transcript 2459 3307 . - . ID=Phyra86882;Parent=Phyra86882;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1354 . CDS 2459 3307 . - 0 ID=Phyra86882;Parent=Phyra86882;rank=1 scaffold_1354 . exon 2459 3307 . - . ID=Phyra86882.1;Parent=Phyra86882;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1360 1 5361 scaffold_1360 . repeat_region 749 896 . ? . description=trf scaffold_1360 . repeat_region 1420 2631 . ? . description=dust scaffold_1360 . biological_region 3299 3301 0.999 + . logic_name=eponine scaffold_1360 . biological_region 3368 3371 0.999 - . logic_name=eponine scaffold_1360 ensembl protein_coding_gene 880 1341 . - . ID=Phyra86889;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1360000001;logic_name=jgi_phyra1 scaffold_1360 ensembl transcript 880 1341 . - . ID=Phyra86889;Parent=Phyra86889;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1360 . CDS 880 1341 . - 0 ID=Phyra86889;Parent=Phyra86889;rank=1 scaffold_1360 . exon 880 1341 . - . ID=Phyra86889.1;Parent=Phyra86889;constitutive=1;rank=1 scaffold_1360 ensembl protein_coding_gene 3127 5206 . - . ID=Phyra86890;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1360000002;logic_name=jgi_phyra1 scaffold_1360 ensembl transcript 3127 5206 . - . ID=Phyra86890;Parent=Phyra86890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1360 . CDS 3127 3150 . - 0 ID=Phyra86890;Parent=Phyra86890;rank=2 scaffold_1360 . exon 3127 3150 . - . ID=Phyra86890.2;Parent=Phyra86890;constitutive=1;rank=2 scaffold_1360 . CDS 3281 5206 . - 0 ID=Phyra86890;Parent=Phyra86890;rank=1 scaffold_1360 . exon 3281 5206 . - . ID=Phyra86890.1;Parent=Phyra86890;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1353 1 5364 scaffold_1353 . repeat_region 1119 2206 . ? . description=dust scaffold_1353 . repeat_region 3790 4629 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1359 1 5370 scaffold_1359 . repeat_region 2844 2893 . ? . description=dust scaffold_1359 . biological_region 3386 3389 0.999 + . logic_name=eponine scaffold_1359 . biological_region 4759 4760 0.999 + . logic_name=eponine scaffold_1359 . biological_region 4899 4902 0.999 + . logic_name=eponine scaffold_1359 . biological_region 4951 4954 0.999 + . logic_name=eponine scaffold_1359 . biological_region 5053 5057 0.999 + . logic_name=eponine scaffold_1359 . repeat_region 5264 5363 . + . description=GypsyPi-1c_I-int scaffold_1359 ensembl protein_coding_gene 1280 2196 . + . ID=Phyra86888;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1359000001;logic_name=jgi_phyra1 scaffold_1359 ensembl transcript 1280 2196 . + . ID=Phyra86888;Parent=Phyra86888;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1359 . CDS 1280 1527 . + 0 ID=Phyra86888;Parent=Phyra86888;rank=1 scaffold_1359 . exon 1280 1527 . + . ID=Phyra86888.1;Parent=Phyra86888;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1359 . CDS 1602 1962 . + 0 ID=Phyra86888;Parent=Phyra86888;rank=2 scaffold_1359 . exon 1602 1962 . + . ID=Phyra86888.2;Parent=Phyra86888;constitutive=1;ensembl_phase=2;rank=2 scaffold_1359 . CDS 2014 2196 . + 0 ID=Phyra86888;Parent=Phyra86888;rank=3 scaffold_1359 . exon 2014 2196 . + . ID=Phyra86888.3;Parent=Phyra86888;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1352 1 5373 scaffold_1352 . biological_region 471 472 0.999 + . logic_name=eponine scaffold_1352 . biological_region 3966 3968 0.999 - . logic_name=eponine scaffold_1352 . repeat_region 4251 4260 . ? . description=dust scaffold_1352 ensembl protein_coding_gene 1539 2246 . - . ID=Phyra86880;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1352000001;logic_name=jgi_phyra1 scaffold_1352 ensembl transcript 1539 2246 . - . ID=Phyra86880;Parent=Phyra86880;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1352 . CDS 1539 2246 . - 0 ID=Phyra86880;Parent=Phyra86880;rank=1 scaffold_1352 . exon 1539 2246 . - . ID=Phyra86880.1;Parent=Phyra86880;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1364 1 5400 scaffold_1364 . biological_region 3017 3020 0.999 + . logic_name=eponine scaffold_1364 . biological_region 4060 4061 0.999 + . logic_name=eponine scaffold_1364 . biological_region 4237 4237 0.999 + . logic_name=eponine scaffold_1364 . biological_region 5324 5327 0.999 - . logic_name=eponine scaffold_1364 ensembl protein_coding_gene 3613 4038 . - . ID=Phyra41393;biotype=protein_coding;external_name=gwEuk.1364.3.1;logic_name=jgi_phyra1 scaffold_1364 ensembl transcript 3613 4038 . - . ID=Phyra41393;Parent=Phyra41393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1364 . CDS 3613 4038 . - 0 ID=Phyra41393;Parent=Phyra41393;rank=1 scaffold_1364 . exon 3613 4038 . - . ID=Phyra41393.1;Parent=Phyra41393;constitutive=1;rank=1 scaffold_1364 ensembl protein_coding_gene 302 3064 . - . ID=Phyra86896;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1364000001;logic_name=jgi_phyra1 scaffold_1364 ensembl transcript 302 3064 . - . ID=Phyra86896;Parent=Phyra86896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1364 . CDS 302 3064 . - 0 ID=Phyra86896;Parent=Phyra86896;rank=1 scaffold_1364 . exon 302 3064 . - . ID=Phyra86896.1;Parent=Phyra86896;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1351 1 5447 scaffold_1351 . repeat_region 1514 1563 . ? . description=dust scaffold_1351 . repeat_region 4244 4333 . ? . description=trf scaffold_1351 ensembl pseudogene 29 374 . - . ID=Phyra41370;biotype=pseudogene;external_name=gwEuk.1351.1.1;logic_name=jgi_phyra1 scaffold_1351 ensembl pseudogene 29 374 . - . ID=Phyra41370;Parent=Phyra41370;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1351 . exon 29 374 . - . ID=Phyra41370.1;Parent=Phyra41370;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1351 ensembl protein_coding_gene 840 1196 . - . ID=Phyra41371;biotype=protein_coding;external_name=gwEuk.1351.2.1;logic_name=jgi_phyra1 scaffold_1351 ensembl transcript 840 1196 . - . ID=Phyra41371;Parent=Phyra41371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1351 . CDS 840 1196 . - 0 ID=Phyra41371;Parent=Phyra41371;rank=1 scaffold_1351 . exon 840 1196 . - . ID=Phyra41371.1;Parent=Phyra41371;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1349 1 5448 scaffold_1349 . biological_region 2048 2050 0.999 + . logic_name=eponine scaffold_1349 . repeat_region 2123 2344 . - . description=GypsyPi-1c_I-int scaffold_1349 . repeat_region 2825 4069 . ? . description=dust scaffold_1349 . repeat_region 4093 4755 . - . description=GypsyPi-1c_I-int scaffold_1349 ensembl protein_coding_gene 505 2106 . + . ID=Phyra86878;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1349000001;logic_name=jgi_phyra1 scaffold_1349 ensembl transcript 505 2106 . + . ID=Phyra86878;Parent=Phyra86878;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1349 . CDS 505 867 . + 0 ID=Phyra86878;Parent=Phyra86878;rank=1 scaffold_1349 . exon 505 867 . + . ID=Phyra86878.1;Parent=Phyra86878;constitutive=1;rank=1 scaffold_1349 . CDS 910 1456 . + 0 ID=Phyra86878;Parent=Phyra86878;rank=2 scaffold_1349 . exon 910 1456 . + . ID=Phyra86878.2;Parent=Phyra86878;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1349 . CDS 1481 1678 . + 0 ID=Phyra86878;Parent=Phyra86878;rank=3 scaffold_1349 . exon 1481 1678 . + . ID=Phyra86878.3;Parent=Phyra86878;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1349 . CDS 1745 2106 . + 0 ID=Phyra86878;Parent=Phyra86878;rank=4 scaffold_1349 . exon 1745 2106 . + . ID=Phyra86878.4;Parent=Phyra86878;constitutive=1;ensembl_phase=1;rank=4 scaffold_1349 ensembl protein_coding_gene 4159 4590 . - . ID=Phyra86879;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1349000002;logic_name=jgi_phyra1 scaffold_1349 ensembl transcript 4159 4590 . - . ID=Phyra86879;Parent=Phyra86879;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1349 . CDS 4159 4590 . - 0 ID=Phyra86879;Parent=Phyra86879;rank=1 scaffold_1349 . exon 4159 4590 . - . ID=Phyra86879.1;Parent=Phyra86879;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1362 1 5454 scaffold_1362 . repeat_region 53 60 . ? . description=dust scaffold_1362 . repeat_region 1808 2249 . ? . description=dust scaffold_1362 . biological_region 5086 5088 0.999 - . logic_name=eponine scaffold_1362 ensembl protein_coding_gene 1109 1684 . + . ID=Phyra41378;biotype=protein_coding;external_name=gwEuk.1362.2.1;logic_name=jgi_phyra1 scaffold_1362 ensembl transcript 1109 1684 . + . ID=Phyra41378;Parent=Phyra41378;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1362 . CDS 1109 1684 . + 0 ID=Phyra41378;Parent=Phyra41378;rank=1 scaffold_1362 . exon 1109 1684 . + . ID=Phyra41378.1;Parent=Phyra41378;constitutive=1;rank=1 scaffold_1362 ensembl protein_coding_gene 3014 5390 . - . ID=Phyra86894;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1362000002;logic_name=jgi_phyra1 scaffold_1362 ensembl transcript 3014 5390 . - . ID=Phyra86894;Parent=Phyra86894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1362 . CDS 3014 3469 . - 0 ID=Phyra86894;Parent=Phyra86894;rank=3 scaffold_1362 . exon 3014 3469 . - . ID=Phyra86894.3;Parent=Phyra86894;constitutive=1;rank=3 scaffold_1362 . CDS 3615 5238 . - 0 ID=Phyra86894;Parent=Phyra86894;rank=2 scaffold_1362 . exon 3615 5238 . - . ID=Phyra86894.2;Parent=Phyra86894;constitutive=1;ensembl_phase=2;rank=2 scaffold_1362 . CDS 5266 5390 . - 0 ID=Phyra86894;Parent=Phyra86894;rank=1 scaffold_1362 . exon 5266 5390 . - . ID=Phyra86894.1;Parent=Phyra86894;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1348 1 5464 scaffold_1348 . repeat_region 8 285 . + . description=GypsyPi-1c_I-int scaffold_1348 . biological_region 360 361 0.999 - . logic_name=eponine scaffold_1348 . repeat_region 534 554 . ? . description=dust scaffold_1348 . repeat_region 1198 1902 . ? . description=dust scaffold_1348 . biological_region 2751 2751 0.999 + . logic_name=eponine scaffold_1348 . biological_region 3191 3193 0.999 + . logic_name=eponine scaffold_1348 . repeat_region 3519 4579 . ? . description=dust scaffold_1348 ensembl protein_coding_gene 2574 3431 . - . ID=Phyra86877;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1348000001;logic_name=jgi_phyra1 scaffold_1348 ensembl transcript 2574 3431 . - . ID=Phyra86877;Parent=Phyra86877;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1348 . CDS 2574 3431 . - 0 ID=Phyra86877;Parent=Phyra86877;rank=1 scaffold_1348 . exon 2574 3431 . - . ID=Phyra86877.1;Parent=Phyra86877;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1346 1 5494 scaffold_1346 . repeat_region 227 240 . ? . description=dust scaffold_1346 . repeat_region 821 2324 . ? . description=dust scaffold_1346 . repeat_region 2853 2960 . ? . description=trf scaffold_1346 . repeat_region 3140 3176 . ? . description=trf scaffold_1346 . repeat_region 3665 3672 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1347 1 5494 scaffold_1347 . repeat_region 1477 1520 . ? . description=trf scaffold_1347 . repeat_region 2242 2322 . ? . description=dust scaffold_1347 . biological_region 3228 3229 0.999 + . logic_name=eponine scaffold_1347 . biological_region 3420 3422 0.999 + . logic_name=eponine scaffold_1347 . biological_region 3472 3475 0.999 - . logic_name=eponine scaffold_1347 . biological_region 3603 3603 0.999 - . logic_name=eponine scaffold_1347 . biological_region 3712 3715 0.999 + . logic_name=eponine scaffold_1347 . biological_region 3799 3804 0.999 - . logic_name=eponine scaffold_1347 . biological_region 3821 3827 0.999 - . logic_name=eponine scaffold_1347 . biological_region 3857 3862 0.999 - . logic_name=eponine scaffold_1347 . biological_region 4512 4513 0.999 - . logic_name=eponine scaffold_1347 . repeat_region 5383 5430 . ? . description=dust scaffold_1347 ensembl protein_coding_gene 181 1853 . - . ID=Phyra86875;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1347000001;logic_name=jgi_phyra1 scaffold_1347 ensembl transcript 181 1853 . - . ID=Phyra86875;Parent=Phyra86875;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1347 . CDS 181 857 . - 0 ID=Phyra86875;Parent=Phyra86875;rank=2 scaffold_1347 . exon 181 857 . - . ID=Phyra86875.2;Parent=Phyra86875;constitutive=1;ensembl_phase=1;rank=2 scaffold_1347 . CDS 914 1853 . - 0 ID=Phyra86875;Parent=Phyra86875;rank=1 scaffold_1347 . exon 914 1853 . - . ID=Phyra86875.1;Parent=Phyra86875;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1347 ensembl protein_coding_gene 4742 5485 . - . ID=Phyra86876;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1347000002;logic_name=jgi_phyra1 scaffold_1347 ensembl transcript 4742 5485 . - . ID=Phyra86876;Parent=Phyra86876;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1347 . CDS 4742 5485 . - 0 ID=Phyra86876;Parent=Phyra86876;rank=1 scaffold_1347 . exon 4742 5485 . - . ID=Phyra86876.1;Parent=Phyra86876;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1350 1 5512 ##gff-version 3 ##sequence-region scaffold_1333 1 5521 scaffold_1333 . biological_region 125 129 0.999 - . logic_name=eponine scaffold_1333 . repeat_region 2041 2059 . ? . description=dust scaffold_1333 . biological_region 2089 2092 0.999 + . logic_name=eponine scaffold_1333 . repeat_region 2290 2297 . ? . description=dust scaffold_1333 . repeat_region 2850 2857 . ? . description=dust scaffold_1333 . repeat_region 3551 4121 . ? . description=dust scaffold_1333 ensembl protein_coding_gene 927 1289 . - . ID=Phyra86853;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1333000001;logic_name=jgi_phyra1 scaffold_1333 ensembl transcript 927 1289 . - . ID=Phyra86853;Parent=Phyra86853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1333 . CDS 927 1289 . - 0 ID=Phyra86853;Parent=Phyra86853;rank=1 scaffold_1333 . exon 927 1289 . - . ID=Phyra86853.1;Parent=Phyra86853;constitutive=1;rank=1 scaffold_1333 ensembl protein_coding_gene 4371 5479 . - . ID=Phyra86854;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1333000002;logic_name=jgi_phyra1 scaffold_1333 ensembl transcript 4371 5479 . - . ID=Phyra86854;Parent=Phyra86854;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1333 . CDS 4371 5104 . - 0 ID=Phyra86854;Parent=Phyra86854;rank=2 scaffold_1333 . exon 4371 5104 . - . ID=Phyra86854.2;Parent=Phyra86854;constitutive=1;ensembl_phase=1;rank=2 scaffold_1333 . CDS 5155 5479 . - 0 ID=Phyra86854;Parent=Phyra86854;rank=1 scaffold_1333 . exon 5155 5479 . - . ID=Phyra86854.1;Parent=Phyra86854;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1340 1 5580 scaffold_1340 . repeat_region 1221 2205 . ? . description=dust scaffold_1340 . biological_region 2416 2418 0.999 - . logic_name=eponine scaffold_1340 . biological_region 3016 3018 0.999 + . logic_name=eponine scaffold_1340 . repeat_region 3714 4679 . ? . description=dust scaffold_1340 ensembl protein_coding_gene 2237 3617 . + . ID=Phyra86866;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1340000001;logic_name=jgi_phyra1 scaffold_1340 ensembl transcript 2237 3617 . + . ID=Phyra86866;Parent=Phyra86866;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1340 . CDS 2237 3577 . + 0 ID=Phyra86866;Parent=Phyra86866;rank=1 scaffold_1340 . exon 2237 3577 . + . ID=Phyra86866.1;Parent=Phyra86866;constitutive=1;rank=1 scaffold_1340 . CDS 3606 3617 . + 0 ID=Phyra86866;Parent=Phyra86866;rank=2 scaffold_1340 . exon 3606 3617 . + . ID=Phyra86866.2;Parent=Phyra86866;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1341 1 5584 scaffold_1341 . repeat_region 4854 4868 . ? . description=dust scaffold_1341 ensembl protein_coding_gene 859 1396 . + . ID=Phyra86867;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1341000001;logic_name=jgi_phyra1 scaffold_1341 ensembl transcript 859 1396 . + . ID=Phyra86867;Parent=Phyra86867;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1341 . CDS 859 995 . + 0 ID=Phyra86867;Parent=Phyra86867;rank=1 scaffold_1341 . exon 859 995 . + . ID=Phyra86867.1;Parent=Phyra86867;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1341 . CDS 1024 1232 . + 0 ID=Phyra86867;Parent=Phyra86867;rank=2 scaffold_1341 . exon 1024 1232 . + . ID=Phyra86867.2;Parent=Phyra86867;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1341 . CDS 1275 1396 . + 0 ID=Phyra86867;Parent=Phyra86867;rank=3 scaffold_1341 . exon 1275 1396 . + . ID=Phyra86867.3;Parent=Phyra86867;constitutive=1;ensembl_phase=1;rank=3 scaffold_1341 ensembl protein_coding_gene 1853 4603 . - . ID=Phyra86868;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1341000002;logic_name=jgi_phyra1 scaffold_1341 ensembl transcript 1853 4603 . - . ID=Phyra86868;Parent=Phyra86868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1341 . CDS 1853 4603 . - 0 ID=Phyra86868;Parent=Phyra86868;rank=1 scaffold_1341 . exon 1853 4603 . - . ID=Phyra86868.1;Parent=Phyra86868;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1342 1 5588 scaffold_1342 . repeat_region 1296 1338 . ? . description=trf scaffold_1342 . repeat_region 1390 2148 . ? . description=dust scaffold_1342 . repeat_region 2265 2297 . ? . description=trf scaffold_1342 . biological_region 2411 2414 0.999 - . logic_name=eponine scaffold_1342 . repeat_region 3530 4281 . ? . description=dust scaffold_1342 . repeat_region 4604 4646 . ? . description=trf scaffold_1342 . biological_region 5555 5556 0.999 - . logic_name=eponine scaffold_1342 ensembl protein_coding_gene 18 1202 . + . ID=Phyra72467;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1342000001;logic_name=jgi_phyra1 scaffold_1342 ensembl transcript 18 1202 . + . ID=Phyra72467;Parent=Phyra72467;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1342 . CDS 18 1202 . + 0 ID=Phyra72467;Parent=Phyra72467;rank=1 scaffold_1342 . exon 18 1202 . + . ID=Phyra72467.1;Parent=Phyra72467;constitutive=1;rank=1 scaffold_1342 ensembl protein_coding_gene 2199 5537 . + . ID=Phyra86870;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1342000002;logic_name=jgi_phyra1 scaffold_1342 ensembl transcript 2199 5537 . + . ID=Phyra86870;Parent=Phyra86870;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1342 . CDS 2199 3499 . + 0 ID=Phyra86870;Parent=Phyra86870;rank=1 scaffold_1342 . exon 2199 3499 . + . ID=Phyra86870.1;Parent=Phyra86870;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1342 . CDS 4828 5537 . + 0 ID=Phyra86870;Parent=Phyra86870;rank=2 scaffold_1342 . exon 4828 5537 . + . ID=Phyra86870.2;Parent=Phyra86870;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1339 1 5596 scaffold_1339 . repeat_region 909 1394 . ? . description=dust scaffold_1339 ensembl protein_coding_gene 2953 3882 . - . ID=Phyra72466;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1339000001;logic_name=jgi_phyra1 scaffold_1339 ensembl transcript 2953 3882 . - . ID=Phyra72466;Parent=Phyra72466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1339 . CDS 2953 3882 . - 0 ID=Phyra72466;Parent=Phyra72466;rank=1 scaffold_1339 . exon 2953 3882 . - . ID=Phyra72466.1;Parent=Phyra72466;constitutive=1;rank=1 scaffold_1339 ensembl protein_coding_gene 543 2626 . - . ID=Phyra86864;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1339000001;logic_name=jgi_phyra1 scaffold_1339 ensembl transcript 543 2626 . - . ID=Phyra86864;Parent=Phyra86864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1339 . CDS 543 859 . - 0 ID=Phyra86864;Parent=Phyra86864;rank=3 scaffold_1339 . exon 543 859 . - . ID=Phyra86864.3;Parent=Phyra86864;constitutive=1;ensembl_phase=1;rank=3 scaffold_1339 . CDS 2059 2438 . - 0 ID=Phyra86864;Parent=Phyra86864;rank=2 scaffold_1339 . exon 2059 2438 . - . ID=Phyra86864.2;Parent=Phyra86864;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1339 . CDS 2496 2626 . - 0 ID=Phyra86864;Parent=Phyra86864;rank=1 scaffold_1339 . exon 2496 2626 . - . ID=Phyra86864.1;Parent=Phyra86864;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1338 1 5605 scaffold_1338 . biological_region 596 602 0.999 + . logic_name=eponine scaffold_1338 . repeat_region 861 2225 . ? . description=dust scaffold_1338 . biological_region 2487 2488 0.999 + . logic_name=eponine scaffold_1338 . repeat_region 2581 2628 . ? . description=dust scaffold_1338 . repeat_region 2599 2626 . ? . description=trf scaffold_1338 . repeat_region 3602 4125 . - . description=GypsyPi-1c_I-int scaffold_1338 . repeat_region 4126 4268 . - . description=GypsyPi-1c_LTR scaffold_1338 . repeat_region 4348 4709 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1345 1 5606 scaffold_1345 . repeat_region 1298 1347 . ? . description=dust scaffold_1345 . repeat_region 4827 4862 . ? . description=trf scaffold_1345 . repeat_region 4827 4862 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1337 1 5607 scaffold_1337 . repeat_region 249 291 . ? . description=trf scaffold_1337 . repeat_region 1195 2178 . ? . description=dust scaffold_1337 . repeat_region 3616 4853 . ? . description=dust scaffold_1337 . repeat_region 5057 5098 . ? . description=trf scaffold_1337 ensembl protein_coding_gene 397 4909 . + . ID=Phyra86862;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1337000001;logic_name=jgi_phyra1 scaffold_1337 ensembl transcript 397 4909 . + . ID=Phyra86862;Parent=Phyra86862;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1337 . CDS 397 1154 . + 0 ID=Phyra86862;Parent=Phyra86862;rank=1 scaffold_1337 . exon 397 1154 . + . ID=Phyra86862.1;Parent=Phyra86862;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1337 . CDS 2207 3534 . + 0 ID=Phyra86862;Parent=Phyra86862;rank=2 scaffold_1337 . exon 2207 3534 . + . ID=Phyra86862.2;Parent=Phyra86862;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1337 . CDS 4905 4909 . + 0 ID=Phyra86862;Parent=Phyra86862;rank=3 scaffold_1337 . exon 4905 4909 . + . ID=Phyra86862.3;Parent=Phyra86862;constitutive=1;ensembl_phase=1;rank=3 scaffold_1337 ensembl protein_coding_gene 4991 5557 . - . ID=Phyra86863;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1337000002;logic_name=jgi_phyra1 scaffold_1337 ensembl transcript 4991 5557 . - . ID=Phyra86863;Parent=Phyra86863;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1337 . CDS 4991 5036 . - 0 ID=Phyra86863;Parent=Phyra86863;rank=2 scaffold_1337 . exon 4991 5036 . - . ID=Phyra86863.2;Parent=Phyra86863;constitutive=1;ensembl_phase=2;rank=2 scaffold_1337 . CDS 5202 5557 . - 0 ID=Phyra86863;Parent=Phyra86863;rank=1 scaffold_1337 . exon 5202 5557 . - . ID=Phyra86863.1;Parent=Phyra86863;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1335 1 5609 scaffold_1335 . biological_region 2051 2052 0.999 + . logic_name=eponine scaffold_1335 . repeat_region 3382 4336 . ? . description=dust scaffold_1335 ensembl pseudogene 1604 2789 . - . ID=Phyra41284;biotype=pseudogene;external_name=gwEuk.1335.4.1;logic_name=jgi_phyra1 scaffold_1335 ensembl pseudogene 1604 2789 . - . ID=Phyra41284;Parent=Phyra41284;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1335 . exon 1604 2789 . - . ID=Phyra41284.1;Parent=Phyra41284;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1335 ensembl protein_coding_gene 4339 5607 . - . ID=Phyra41288;biotype=protein_coding;external_name=gwEuk.1335.8.1;logic_name=jgi_phyra1 scaffold_1335 ensembl transcript 4339 5607 . - . ID=Phyra41288;Parent=Phyra41288;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1335 . CDS 4339 5607 . - 0 ID=Phyra41288;Parent=Phyra41288;rank=1 scaffold_1335 . exon 4339 5607 . - . ID=Phyra41288.1;Parent=Phyra41288;constitutive=1;rank=1 scaffold_1335 ensembl protein_coding_gene 77 892 . + . ID=Phyra86858;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1335000001;logic_name=jgi_phyra1 scaffold_1335 ensembl transcript 77 892 . + . ID=Phyra86858;Parent=Phyra86858;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1335 . CDS 77 892 . + 0 ID=Phyra86858;Parent=Phyra86858;rank=1 scaffold_1335 . exon 77 892 . + . ID=Phyra86858.1;Parent=Phyra86858;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1336 1 5620 scaffold_1336 . repeat_region 1951 2833 . ? . description=dust scaffold_1336 . repeat_region 3524 3531 . ? . description=dust scaffold_1336 . biological_region 3555 3557 0.999 + . logic_name=eponine scaffold_1336 ensembl protein_coding_gene 4523 5620 . + . ID=Phyra41292;biotype=protein_coding;external_name=gwEuk.1336.2.1;logic_name=jgi_phyra1 scaffold_1336 ensembl transcript 4523 5620 . + . ID=Phyra41292;Parent=Phyra41292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1336 . CDS 4523 5620 . + 0 ID=Phyra41292;Parent=Phyra41292;rank=1 scaffold_1336 . exon 4523 5620 . + . ID=Phyra41292.1;Parent=Phyra41292;constitutive=1;rank=1 scaffold_1336 ensembl protein_coding_gene 72 1624 . + . ID=Phyra86860;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1336000001;logic_name=jgi_phyra1 scaffold_1336 ensembl transcript 72 1624 . + . ID=Phyra86860;Parent=Phyra86860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1336 . exon 72 658 . + . ID=Phyra86860.1;Parent=Phyra86860;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1336 . CDS 73 658 . + 0 ID=Phyra86860;Parent=Phyra86860;rank=1 scaffold_1336 . CDS 751 839 . + 0 ID=Phyra86860;Parent=Phyra86860;rank=2 scaffold_1336 . exon 751 839 . + . ID=Phyra86860.2;Parent=Phyra86860;constitutive=1;ensembl_phase=1;rank=2 scaffold_1336 . CDS 918 977 . + 0 ID=Phyra86860;Parent=Phyra86860;rank=3 scaffold_1336 . exon 918 977 . + . ID=Phyra86860.3;Parent=Phyra86860;constitutive=1;rank=3 scaffold_1336 . CDS 1008 1142 . + 0 ID=Phyra86860;Parent=Phyra86860;rank=4 scaffold_1336 . exon 1008 1142 . + . ID=Phyra86860.4;Parent=Phyra86860;constitutive=1;rank=4 scaffold_1336 . CDS 1220 1624 . + 0 ID=Phyra86860;Parent=Phyra86860;rank=5 scaffold_1336 . exon 1220 1624 . + . ID=Phyra86860.5;Parent=Phyra86860;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_1314 1 5648 scaffold_1314 . repeat_region 1011 1032 . ? . description=trf scaffold_1314 . repeat_region 1075 1660 . ? . description=dust scaffold_1314 . biological_region 2494 2496 0.999 - . logic_name=eponine scaffold_1314 . repeat_region 2982 3024 . ? . description=trf scaffold_1314 . repeat_region 4270 4300 . ? . description=trf scaffold_1314 . repeat_region 4416 4457 . ? . description=trf scaffold_1314 ensembl protein_coding_gene 7 5468 . - . ID=Phyra86833;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1314000001;logic_name=jgi_phyra1 scaffold_1314 ensembl transcript 7 5468 . - . ID=Phyra86833;Parent=Phyra86833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1314 . CDS 7 1050 . - 0 ID=Phyra86833;Parent=Phyra86833;rank=4 scaffold_1314 . exon 7 1050 . - . ID=Phyra86833.4;Parent=Phyra86833;constitutive=1;rank=4 scaffold_1314 . CDS 1664 2723 . - 0 ID=Phyra86833;Parent=Phyra86833;rank=3 scaffold_1314 . exon 1664 2723 . - . ID=Phyra86833.3;Parent=Phyra86833;constitutive=1;ensembl_phase=2;rank=3 scaffold_1314 . CDS 3079 4127 . - 0 ID=Phyra86833;Parent=Phyra86833;rank=2 scaffold_1314 . exon 3079 4127 . - . ID=Phyra86833.2;Parent=Phyra86833;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1314 . CDS 4536 5468 . - 0 ID=Phyra86833;Parent=Phyra86833;rank=1 scaffold_1314 . exon 4536 5468 . - . ID=Phyra86833.1;Parent=Phyra86833;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1331 1 5660 scaffold_1331 . repeat_region 1196 1380 . ? . description=dust scaffold_1331 . repeat_region 1534 1699 . ? . description=trf scaffold_1331 . repeat_region 3431 4184 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1330 1 5665 scaffold_1330 . biological_region 515 520 0.999 - . logic_name=eponine scaffold_1330 . repeat_region 859 891 . ? . description=trf scaffold_1330 . biological_region 3142 3144 0.999 + . logic_name=eponine scaffold_1330 . biological_region 3184 3187 0.999 + . logic_name=eponine scaffold_1330 . biological_region 3252 3255 0.999 + . logic_name=eponine scaffold_1330 . biological_region 3911 3913 0.999 - . logic_name=eponine scaffold_1330 . biological_region 4102 4106 0.999 + . logic_name=eponine scaffold_1330 . biological_region 4484 4487 0.999 - . logic_name=eponine scaffold_1330 ensembl protein_coding_gene 292 1800 . + . ID=Phyra86850;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1330000001;logic_name=jgi_phyra1 scaffold_1330 ensembl transcript 292 1800 . + . ID=Phyra86850;Parent=Phyra86850;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1330 . CDS 292 1369 . + 0 ID=Phyra86850;Parent=Phyra86850;rank=1 scaffold_1330 . exon 292 1369 . + . ID=Phyra86850.1;Parent=Phyra86850;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1330 . CDS 1439 1800 . + 0 ID=Phyra86850;Parent=Phyra86850;rank=2 scaffold_1330 . exon 1439 1800 . + . ID=Phyra86850.2;Parent=Phyra86850;constitutive=1;ensembl_phase=1;rank=2 scaffold_1330 ensembl protein_coding_gene 4002 5618 . + . ID=Phyra86851;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1330000002;logic_name=jgi_phyra1 scaffold_1330 ensembl transcript 4002 5618 . + . ID=Phyra86851;Parent=Phyra86851;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1330 . CDS 4002 4357 . + 0 ID=Phyra86851;Parent=Phyra86851;rank=1 scaffold_1330 . exon 4002 4357 . + . ID=Phyra86851.1;Parent=Phyra86851;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1330 . CDS 5246 5618 . + 0 ID=Phyra86851;Parent=Phyra86851;rank=2 scaffold_1330 . exon 5246 5618 . + . ID=Phyra86851.2;Parent=Phyra86851;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1332 1 5675 scaffold_1332 . repeat_region 1 820 . - . description=Polinton-1_PI scaffold_1332 . repeat_region 834 2021 . ? . description=dust scaffold_1332 . repeat_region 2023 2969 . - . description=Polinton-1_PI scaffold_1332 . repeat_region 2971 3025 . ? . description=trf scaffold_1332 . repeat_region 3042 3061 . ? . description=trf scaffold_1332 . repeat_region 3128 3240 . - . description=Polinton-1_PI scaffold_1332 . repeat_region 3263 3370 . ? . description=trf scaffold_1332 . repeat_region 3444 3527 . + . description=Polinton-1_PI scaffold_1332 . repeat_region 3576 4688 . ? . description=dust scaffold_1332 . biological_region 5277 5278 0.999 + . logic_name=eponine scaffold_1332 ensembl protein_coding_gene 3383 5606 . - . ID=Phyra86852;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1332000001;logic_name=jgi_phyra1 scaffold_1332 ensembl transcript 3383 5606 . - . ID=Phyra86852;Parent=Phyra86852;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1332 . CDS 3383 3393 . - 0 ID=Phyra86852;Parent=Phyra86852;rank=3 scaffold_1332 . exon 3383 3393 . - . ID=Phyra86852.3;Parent=Phyra86852;constitutive=1;ensembl_phase=1;rank=3 scaffold_1332 . CDS 4694 4817 . - 0 ID=Phyra86852;Parent=Phyra86852;rank=2 scaffold_1332 . exon 4694 4817 . - . ID=Phyra86852.2;Parent=Phyra86852;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1332 . CDS 4914 5606 . - 0 ID=Phyra86852;Parent=Phyra86852;rank=1 scaffold_1332 . exon 4914 5606 . - . ID=Phyra86852.1;Parent=Phyra86852;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1344 1 5677 scaffold_1344 . repeat_region 1007 2045 . ? . description=dust scaffold_1344 . repeat_region 3635 4520 . ? . description=dust scaffold_1344 ensembl protein_coding_gene 2545 3618 . - . ID=Phyra86874;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1344000001;logic_name=jgi_phyra1 scaffold_1344 ensembl transcript 2545 3618 . - . ID=Phyra86874;Parent=Phyra86874;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1344 . CDS 2545 3618 . - 0 ID=Phyra86874;Parent=Phyra86874;rank=1 scaffold_1344 . exon 2545 3618 . - . ID=Phyra86874.1;Parent=Phyra86874;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1327 1 5681 scaffold_1327 . biological_region 397 399 0.999 - . logic_name=eponine scaffold_1327 . repeat_region 938 2384 . ? . description=dust scaffold_1327 . biological_region 3091 3094 0.999 + . logic_name=eponine scaffold_1327 . biological_region 3203 3203 0.999 + . logic_name=eponine scaffold_1327 . repeat_region 3577 4688 . ? . description=dust scaffold_1327 . repeat_region 4694 5426 . + . description=GypsyPi-1c_I-int scaffold_1327 ensembl protein_coding_gene 4694 5470 . + . ID=Phyra72465;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1327000001;logic_name=jgi_phyra1 scaffold_1327 ensembl transcript 4694 5470 . + . ID=Phyra72465;Parent=Phyra72465;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1327 . CDS 4694 5470 . + 0 ID=Phyra72465;Parent=Phyra72465;rank=1 scaffold_1327 . exon 4694 5470 . + . ID=Phyra72465.1;Parent=Phyra72465;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1325 1 5716 scaffold_1325 . biological_region 1050 1051 0.999 - . logic_name=eponine scaffold_1325 . biological_region 2200 2204 0.999 + . logic_name=eponine scaffold_1325 . biological_region 3541 3545 0.999 - . logic_name=eponine scaffold_1325 . biological_region 3895 3897 0.999 - . logic_name=eponine scaffold_1325 ensembl protein_coding_gene 8 1366 . - . ID=Phyra86847;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1325000001;logic_name=jgi_phyra1 scaffold_1325 ensembl transcript 8 1366 . - . ID=Phyra86847;Parent=Phyra86847;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1325 . CDS 8 393 . - 0 ID=Phyra86847;Parent=Phyra86847;rank=2 scaffold_1325 . exon 8 393 . - . ID=Phyra86847.2;Parent=Phyra86847;constitutive=1;ensembl_phase=1;rank=2 scaffold_1325 . CDS 475 1366 . - 0 ID=Phyra86847;Parent=Phyra86847;rank=1 scaffold_1325 . exon 475 1366 . - . ID=Phyra86847.1;Parent=Phyra86847;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1325 ensembl protein_coding_gene 2230 5192 . - . ID=Phyra86848;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1325000002;logic_name=jgi_phyra1 scaffold_1325 ensembl transcript 2230 5192 . - . ID=Phyra86848;Parent=Phyra86848;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1325 . CDS 2230 3755 . - 0 ID=Phyra86848;Parent=Phyra86848;rank=2 scaffold_1325 . exon 2230 3755 . - . ID=Phyra86848.2;Parent=Phyra86848;constitutive=1;ensembl_phase=1;rank=2 scaffold_1325 . CDS 3824 5192 . - 0 ID=Phyra86848;Parent=Phyra86848;rank=1 scaffold_1325 . exon 3824 5192 . - . ID=Phyra86848.1;Parent=Phyra86848;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1324 1 5720 scaffold_1324 . biological_region 585 587 0.999 + . logic_name=eponine scaffold_1324 . biological_region 1278 1281 0.999 + . logic_name=eponine scaffold_1324 . biological_region 1819 1826 0.999 + . logic_name=eponine scaffold_1324 . biological_region 1868 1870 0.999 - . logic_name=eponine scaffold_1324 . biological_region 1887 1890 0.999 - . logic_name=eponine scaffold_1324 . repeat_region 4387 4413 . ? . description=trf scaffold_1324 . biological_region 5000 5004 0.999 + . logic_name=eponine scaffold_1324 . biological_region 5031 5036 0.999 - . logic_name=eponine scaffold_1324 . biological_region 5092 5098 0.999 - . logic_name=eponine scaffold_1324 . biological_region 5658 5660 0.999 + . logic_name=eponine scaffold_1324 ensembl protein_coding_gene 1166 2725 . + . ID=Phyra86844;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1324000001;logic_name=jgi_phyra1 scaffold_1324 ensembl transcript 1166 2725 . + . ID=Phyra86844;Parent=Phyra86844;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1324 . CDS 1166 1260 . + 0 ID=Phyra86844;Parent=Phyra86844;rank=1 scaffold_1324 . exon 1166 1260 . + . ID=Phyra86844.1;Parent=Phyra86844;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1324 . CDS 1340 1392 . + 0 ID=Phyra86844;Parent=Phyra86844;rank=2 scaffold_1324 . exon 1340 1392 . + . ID=Phyra86844.2;Parent=Phyra86844;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1324 . CDS 1479 2725 . + 0 ID=Phyra86844;Parent=Phyra86844;rank=3 scaffold_1324 . exon 1479 2725 . + . ID=Phyra86844.3;Parent=Phyra86844;constitutive=1;ensembl_phase=1;rank=3 scaffold_1324 ensembl protein_coding_gene 2892 4700 . - . ID=Phyra86845;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1324000002;logic_name=jgi_phyra1 scaffold_1324 ensembl transcript 2892 4700 . - . ID=Phyra86845;Parent=Phyra86845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1324 . CDS 2892 4700 . - 0 ID=Phyra86845;Parent=Phyra86845;rank=1 scaffold_1324 . exon 2892 4700 . - . ID=Phyra86845.1;Parent=Phyra86845;constitutive=1;rank=1 scaffold_1324 ensembl protein_coding_gene 5092 5707 . + . ID=Phyra86846;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1324000003;logic_name=jgi_phyra1 scaffold_1324 ensembl transcript 5092 5707 . + . ID=Phyra86846;Parent=Phyra86846;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1324 . CDS 5092 5543 . + 0 ID=Phyra86846;Parent=Phyra86846;rank=1 scaffold_1324 . exon 5092 5543 . + . ID=Phyra86846.1;Parent=Phyra86846;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1324 . CDS 5614 5707 . + 0 ID=Phyra86846;Parent=Phyra86846;rank=2 scaffold_1324 . exon 5614 5707 . + . ID=Phyra86846.2;Parent=Phyra86846;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1328 1 5730 scaffold_1328 . repeat_region 426 469 . ? . description=trf scaffold_1328 . repeat_region 1128 1177 . ? . description=dust scaffold_1328 . repeat_region 3059 3636 . ? . description=dust scaffold_1328 . repeat_region 3688 3698 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1323 1 5742 scaffold_1323 . biological_region 388 389 0.999 - . logic_name=eponine scaffold_1323 . biological_region 1206 1206 0.999 + . logic_name=eponine scaffold_1323 . biological_region 1395 1397 0.999 + . logic_name=eponine scaffold_1323 . repeat_region 4555 4563 . ? . description=dust scaffold_1323 ensembl protein_coding_gene 819 1727 . + . ID=Phyra72464;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1323000001;logic_name=jgi_phyra1 scaffold_1323 ensembl transcript 819 1727 . + . ID=Phyra72464;Parent=Phyra72464;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1323 . CDS 819 1727 . + 0 ID=Phyra72464;Parent=Phyra72464;rank=1 scaffold_1323 . exon 819 1727 . + . ID=Phyra72464.1;Parent=Phyra72464;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1320 1 5748 scaffold_1320 . biological_region 2839 2839 0.999 + . logic_name=eponine scaffold_1320 . biological_region 3517 3519 0.999 + . logic_name=eponine scaffold_1320 . biological_region 3542 3555 0.999 - . logic_name=eponine scaffold_1320 . biological_region 3601 3603 0.999 + . logic_name=eponine scaffold_1320 . biological_region 4478 4482 0.999 + . logic_name=eponine scaffold_1320 . biological_region 4486 4490 0.999 - . logic_name=eponine scaffold_1320 . repeat_region 5355 5418 . ? . description=trf scaffold_1320 ensembl protein_coding_gene 2310 4137 . + . ID=Phyra86839;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1320000001;logic_name=jgi_phyra1 scaffold_1320 ensembl transcript 2310 4137 . + . ID=Phyra86839;Parent=Phyra86839;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1320 . CDS 2310 3038 . + 0 ID=Phyra86839;Parent=Phyra86839;rank=1 scaffold_1320 . exon 2310 3038 . + . ID=Phyra86839.1;Parent=Phyra86839;constitutive=1;rank=1 scaffold_1320 . CDS 3322 4137 . + 0 ID=Phyra86839;Parent=Phyra86839;rank=2 scaffold_1320 . exon 3322 4137 . + . ID=Phyra86839.2;Parent=Phyra86839;constitutive=1;rank=2 scaffold_1320 ensembl protein_coding_gene 4380 4826 . + . ID=Phyra86840;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1320000002;logic_name=jgi_phyra1 scaffold_1320 ensembl transcript 4380 4826 . + . ID=Phyra86840;Parent=Phyra86840;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1320 . CDS 4380 4826 . + 0 ID=Phyra86840;Parent=Phyra86840;rank=1 scaffold_1320 . exon 4380 4826 . + . ID=Phyra86840.1;Parent=Phyra86840;constitutive=1;rank=1 scaffold_1320 ensembl protein_coding_gene 5037 5733 . + . ID=Phyra86841;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1320000003;logic_name=jgi_phyra1 scaffold_1320 ensembl transcript 5037 5733 . + . ID=Phyra86841;Parent=Phyra86841;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1320 . CDS 5037 5733 . + 0 ID=Phyra86841;Parent=Phyra86841;rank=1 scaffold_1320 . exon 5037 5733 . + . ID=Phyra86841.1;Parent=Phyra86841;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1326 1 5761 scaffold_1326 . biological_region 97 99 0.999 + . logic_name=eponine scaffold_1326 . biological_region 298 300 0.999 + . logic_name=eponine scaffold_1326 . biological_region 350 352 0.999 - . logic_name=eponine scaffold_1326 . biological_region 589 594 0.999 + . logic_name=eponine scaffold_1326 . biological_region 641 647 0.999 - . logic_name=eponine scaffold_1326 . biological_region 700 704 0.999 - . logic_name=eponine scaffold_1326 . biological_region 735 740 0.999 - . logic_name=eponine scaffold_1326 . repeat_region 1375 2428 . ? . description=dust scaffold_1326 . repeat_region 3936 5013 . ? . description=dust scaffold_1326 . biological_region 5266 5267 0.999 - . logic_name=eponine scaffold_1326 . repeat_region 5686 5734 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1319 1 5786 scaffold_1319 . repeat_region 4776 4786 . ? . description=dust scaffold_1319 . repeat_region 5660 5705 . ? . description=trf scaffold_1319 ensembl protein_coding_gene 2250 4624 . + . ID=Phyra86838;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1319000001;logic_name=jgi_phyra1 scaffold_1319 ensembl transcript 2250 4624 . + . ID=Phyra86838;Parent=Phyra86838;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1319 . CDS 2250 3272 . + 0 ID=Phyra86838;Parent=Phyra86838;rank=1 scaffold_1319 . exon 2250 3272 . + . ID=Phyra86838.1;Parent=Phyra86838;constitutive=1;rank=1 scaffold_1319 . CDS 3348 3659 . + 0 ID=Phyra86838;Parent=Phyra86838;rank=2 scaffold_1319 . exon 3348 3659 . + . ID=Phyra86838.2;Parent=Phyra86838;constitutive=1;rank=2 scaffold_1319 . CDS 3734 4624 . + 0 ID=Phyra86838;Parent=Phyra86838;rank=3 scaffold_1319 . exon 3734 4624 . + . ID=Phyra86838.3;Parent=Phyra86838;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1329 1 5823 scaffold_1329 . biological_region 233 236 0.999 - . logic_name=eponine scaffold_1329 . repeat_region 996 1934 . ? . description=dust scaffold_1329 . repeat_region 2990 3015 . ? . description=dust scaffold_1329 . repeat_region 3461 3480 . ? . description=trf scaffold_1329 . repeat_region 3497 3550 . ? . description=trf scaffold_1329 . repeat_region 3739 4517 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1318 1 5946 scaffold_1318 . repeat_region 640 661 . ? . description=trf scaffold_1318 . repeat_region 2028 2162 . ? . description=dust scaffold_1318 . repeat_region 3895 4040 . ? . description=dust scaffold_1318 . repeat_region 4168 4195 . ? . description=trf scaffold_1318 ensembl protein_coding_gene 4799 5572 . - . ID=Phyra86837;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1318000001;logic_name=jgi_phyra1 scaffold_1318 ensembl transcript 4799 5572 . - . ID=Phyra86837;Parent=Phyra86837;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1318 . CDS 4799 5329 . - 0 ID=Phyra86837;Parent=Phyra86837;rank=2 scaffold_1318 . exon 4799 5329 . - . ID=Phyra86837.2;Parent=Phyra86837;constitutive=1;rank=2 scaffold_1318 . CDS 5426 5572 . - 0 ID=Phyra86837;Parent=Phyra86837;rank=1 scaffold_1318 . exon 5426 5572 . - . ID=Phyra86837.1;Parent=Phyra86837;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1322 1 5949 scaffold_1322 . repeat_region 620 627 . ? . description=dust scaffold_1322 . repeat_region 874 2466 . ? . description=dust scaffold_1322 . biological_region 3846 3851 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1317 1 5975 scaffold_1317 . repeat_region 2834 3617 . ? . description=dust scaffold_1317 . biological_region 3734 3739 0.999 + . logic_name=eponine scaffold_1317 . biological_region 3753 3756 0.999 + . logic_name=eponine scaffold_1317 . biological_region 3811 3813 0.999 + . logic_name=eponine scaffold_1317 . biological_region 3885 3887 0.999 + . logic_name=eponine scaffold_1317 . biological_region 3947 3952 0.999 - . logic_name=eponine scaffold_1317 . biological_region 3979 3982 0.999 - . logic_name=eponine scaffold_1317 . biological_region 5267 5268 0.999 - . logic_name=eponine scaffold_1317 . repeat_region 5499 5506 . ? . description=dust scaffold_1317 ensembl protein_coding_gene 260 3975 . - . ID=Phyra86836;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1317000001;logic_name=jgi_phyra1 scaffold_1317 ensembl transcript 260 3975 . - . ID=Phyra86836;Parent=Phyra86836;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1317 . CDS 260 541 . - 0 ID=Phyra86836;Parent=Phyra86836;rank=5 scaffold_1317 . exon 260 541 . - . ID=Phyra86836.5;Parent=Phyra86836;constitutive=1;rank=5 scaffold_1317 . CDS 602 749 . - 0 ID=Phyra86836;Parent=Phyra86836;rank=4 scaffold_1317 . exon 602 749 . - . ID=Phyra86836.4;Parent=Phyra86836;constitutive=1;ensembl_phase=2;rank=4 scaffold_1317 . CDS 831 1090 . - 0 ID=Phyra86836;Parent=Phyra86836;rank=3 scaffold_1317 . exon 831 1090 . - . ID=Phyra86836.3;Parent=Phyra86836;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1317 . CDS 1271 2812 . - 0 ID=Phyra86836;Parent=Phyra86836;rank=2 scaffold_1317 . exon 1271 2812 . - . ID=Phyra86836.2;Parent=Phyra86836;constitutive=1;rank=2 scaffold_1317 . CDS 3646 3975 . - 0 ID=Phyra86836;Parent=Phyra86836;rank=1 scaffold_1317 . exon 3646 3975 . - . ID=Phyra86836.1;Parent=Phyra86836;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1315 1 6003 scaffold_1315 . repeat_region 891 898 . ? . description=dust scaffold_1315 . repeat_region 5524 5607 . - . description=Polinton-1_PI scaffold_1315 . repeat_region 5670 5817 . ? . description=trf scaffold_1315 . repeat_region 5840 5952 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1312 1 6052 scaffold_1312 . repeat_region 5685 5717 . ? . description=trf scaffold_1312 ensembl protein_coding_gene 77 869 . - . ID=Phyra86828;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1312000001;logic_name=jgi_phyra1 scaffold_1312 ensembl transcript 77 869 . - . ID=Phyra86828;Parent=Phyra86828;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1312 . CDS 77 484 . - 0 ID=Phyra86828;Parent=Phyra86828;rank=2 scaffold_1312 . exon 77 484 . - . ID=Phyra86828.2;Parent=Phyra86828;constitutive=1;rank=2 scaffold_1312 . CDS 618 869 . - 0 ID=Phyra86828;Parent=Phyra86828;rank=1 scaffold_1312 . exon 618 869 . - . ID=Phyra86828.1;Parent=Phyra86828;constitutive=1;rank=1 scaffold_1312 ensembl protein_coding_gene 992 2062 . - . ID=Phyra86829;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1312000002;logic_name=jgi_phyra1 scaffold_1312 ensembl transcript 992 2062 . - . ID=Phyra86829;Parent=Phyra86829;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1312 . CDS 992 1755 . - 0 ID=Phyra86829;Parent=Phyra86829;rank=3 scaffold_1312 . exon 992 1755 . - . ID=Phyra86829.3;Parent=Phyra86829;constitutive=1;ensembl_phase=1;rank=3 scaffold_1312 . CDS 1849 1900 . - 0 ID=Phyra86829;Parent=Phyra86829;rank=2 scaffold_1312 . exon 1849 1900 . - . ID=Phyra86829.2;Parent=Phyra86829;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1312 . CDS 2000 2062 . - 0 ID=Phyra86829;Parent=Phyra86829;rank=1 scaffold_1312 . exon 2000 2062 . - . ID=Phyra86829.1;Parent=Phyra86829;constitutive=1;rank=1 scaffold_1312 ensembl protein_coding_gene 3255 4267 . - . ID=Phyra86830;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1312000003;logic_name=jgi_phyra1 scaffold_1312 ensembl transcript 3255 4267 . - . ID=Phyra86830;Parent=Phyra86830;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1312 . CDS 3255 4086 . - 0 ID=Phyra86830;Parent=Phyra86830;rank=2 scaffold_1312 . exon 3255 4086 . - . ID=Phyra86830.2;Parent=Phyra86830;constitutive=1;ensembl_phase=2;rank=2 scaffold_1312 . CDS 4215 4267 . - 0 ID=Phyra86830;Parent=Phyra86830;rank=1 scaffold_1312 . exon 4215 4267 . - . ID=Phyra86830.1;Parent=Phyra86830;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1313 1 6057 scaffold_1313 . biological_region 807 809 0.999 + . logic_name=eponine scaffold_1313 . repeat_region 1980 2564 . ? . description=dust scaffold_1313 . repeat_region 2684 2723 . ? . description=trf scaffold_1313 . biological_region 4497 4498 0.999 - . logic_name=eponine scaffold_1313 . biological_region 4836 4841 0.999 - . logic_name=eponine scaffold_1313 . biological_region 4896 4899 0.999 - . logic_name=eponine scaffold_1313 . repeat_region 5003 5052 . ? . description=dust scaffold_1313 ensembl protein_coding_gene 2625 4601 . - . ID=Phyra72463;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1313000001;logic_name=jgi_phyra1 scaffold_1313 ensembl transcript 2625 4601 . - . ID=Phyra72463;Parent=Phyra72463;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1313 . CDS 2625 4601 . - 0 ID=Phyra72463;Parent=Phyra72463;rank=1 scaffold_1313 . exon 2625 4601 . - . ID=Phyra72463.1;Parent=Phyra72463;constitutive=1;rank=1 scaffold_1313 ensembl protein_coding_gene 814 1462 . + . ID=Phyra86831;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1313000001;logic_name=jgi_phyra1 scaffold_1313 ensembl transcript 814 1462 . + . ID=Phyra86831;Parent=Phyra86831;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1313 . CDS 814 894 . + 0 ID=Phyra86831;Parent=Phyra86831;rank=1 scaffold_1313 . exon 814 894 . + . ID=Phyra86831.1;Parent=Phyra86831;constitutive=1;rank=1 scaffold_1313 . CDS 1013 1112 . + 0 ID=Phyra86831;Parent=Phyra86831;rank=2 scaffold_1313 . exon 1013 1112 . + . ID=Phyra86831.2;Parent=Phyra86831;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1313 . CDS 1263 1293 . + 0 ID=Phyra86831;Parent=Phyra86831;rank=3 scaffold_1313 . exon 1263 1293 . + . ID=Phyra86831.3;Parent=Phyra86831;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1313 . CDS 1360 1462 . + 0 ID=Phyra86831;Parent=Phyra86831;rank=4 scaffold_1313 . exon 1360 1462 . + . ID=Phyra86831.4;Parent=Phyra86831;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_1311 1 6103 scaffold_1311 . repeat_region 1060 1069 . ? . description=dust scaffold_1311 . repeat_region 1175 2513 . ? . description=dust scaffold_1311 ensembl protein_coding_gene 8 938 . - . ID=Phyra86826;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1311000001;logic_name=jgi_phyra1 scaffold_1311 ensembl transcript 8 938 . - . ID=Phyra86826;Parent=Phyra86826;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1311 . CDS 8 938 . - 0 ID=Phyra86826;Parent=Phyra86826;rank=1 scaffold_1311 . exon 8 938 . - . ID=Phyra86826.1;Parent=Phyra86826;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1311 ensembl protein_coding_gene 2902 6046 . + . ID=Phyra86827;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1311000002;logic_name=jgi_phyra1 scaffold_1311 ensembl transcript 2902 6046 . + . ID=Phyra86827;Parent=Phyra86827;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1311 . CDS 2902 3455 . + 0 ID=Phyra86827;Parent=Phyra86827;rank=1 scaffold_1311 . exon 2902 3455 . + . ID=Phyra86827.1;Parent=Phyra86827;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1311 . CDS 3480 4011 . + 0 ID=Phyra86827;Parent=Phyra86827;rank=2 scaffold_1311 . exon 3480 4011 . + . ID=Phyra86827.2;Parent=Phyra86827;constitutive=1;ensembl_phase=2;rank=2 scaffold_1311 . CDS 4049 4489 . + 0 ID=Phyra86827;Parent=Phyra86827;rank=3 scaffold_1311 . exon 4049 4489 . + . ID=Phyra86827.3;Parent=Phyra86827;constitutive=1;rank=3 scaffold_1311 . CDS 5135 6046 . + 0 ID=Phyra86827;Parent=Phyra86827;rank=4 scaffold_1311 . exon 5135 6046 . + . ID=Phyra86827.4;Parent=Phyra86827;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_1310 1 6126 scaffold_1310 . biological_region 1100 1104 0.999 + . logic_name=eponine scaffold_1310 . biological_region 1151 1155 0.999 + . logic_name=eponine scaffold_1310 . biological_region 1180 1181 0.999 - . logic_name=eponine scaffold_1310 . biological_region 1217 1218 0.999 - . logic_name=eponine scaffold_1310 . biological_region 1253 1258 0.999 + . logic_name=eponine scaffold_1310 . repeat_region 1405 2437 . ? . description=dust scaffold_1310 . repeat_region 2438 3654 . + . description=GypsyPi-1c_I-int scaffold_1310 . repeat_region 3773 5494 . ? . description=dust scaffold_1310 . repeat_region 5524 5549 . ? . description=dust scaffold_1310 . repeat_region 5649 5668 . ? . description=trf scaffold_1310 . repeat_region 5649 5668 . ? . description=dust scaffold_1310 ensembl protein_coding_gene 3279 3533 . + . ID=Phyra41207;biotype=protein_coding;external_name=gwEuk.1310.2.1;logic_name=jgi_phyra1 scaffold_1310 ensembl transcript 3279 3533 . + . ID=Phyra41207;Parent=Phyra41207;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1310 . CDS 3279 3533 . + 0 ID=Phyra41207;Parent=Phyra41207;rank=1 scaffold_1310 . exon 3279 3533 . + . ID=Phyra41207.1;Parent=Phyra41207;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1309 1 6132 scaffold_1309 . repeat_region 1812 1853 . ? . description=trf scaffold_1309 . repeat_region 2349 3147 . ? . description=dust scaffold_1309 . repeat_region 3227 3257 . ? . description=trf scaffold_1309 . repeat_region 3227 3257 . ? . description=dust scaffold_1309 . repeat_region 4582 4638 . ? . description=trf scaffold_1309 ensembl protein_coding_gene 1979 2347 . - . ID=Phyra41163;biotype=protein_coding;external_name=gwEuk.1309.4.1;logic_name=jgi_phyra1 scaffold_1309 ensembl transcript 1979 2347 . - . ID=Phyra41163;Parent=Phyra41163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1309 . CDS 1979 2347 . - 0 ID=Phyra41163;Parent=Phyra41163;rank=1 scaffold_1309 . exon 1979 2347 . - . ID=Phyra41163.1;Parent=Phyra41163;constitutive=1;rank=1 scaffold_1309 ensembl protein_coding_gene 1 1566 . + . ID=Phyra86823;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1309000001;logic_name=jgi_phyra1 scaffold_1309 ensembl transcript 1 1566 . + . ID=Phyra86823;Parent=Phyra86823;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1309 . CDS 1 387 . + 0 ID=Phyra86823;Parent=Phyra86823;rank=1 scaffold_1309 . exon 1 387 . + . ID=Phyra86823.1;Parent=Phyra86823;constitutive=1;rank=1 scaffold_1309 . CDS 440 1566 . + 0 ID=Phyra86823;Parent=Phyra86823;rank=2 scaffold_1309 . exon 440 1566 . + . ID=Phyra86823.2;Parent=Phyra86823;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1309 ensembl protein_coding_gene 3153 6132 . - . ID=Phyra86825;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1309000003;logic_name=jgi_phyra1 scaffold_1309 ensembl transcript 3153 6132 . - . ID=Phyra86825;Parent=Phyra86825;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1309 . CDS 3153 3329 . - 0 ID=Phyra86825;Parent=Phyra86825;rank=3 scaffold_1309 . exon 3153 3329 . - . ID=Phyra86825.3;Parent=Phyra86825;constitutive=1;rank=3 scaffold_1309 . CDS 3382 4306 . - 0 ID=Phyra86825;Parent=Phyra86825;rank=2 scaffold_1309 . exon 3382 4306 . - . ID=Phyra86825.2;Parent=Phyra86825;constitutive=1;ensembl_phase=2;rank=2 scaffold_1309 . CDS 4867 6131 . - 0 ID=Phyra86825;Parent=Phyra86825;rank=1 scaffold_1309 . exon 4867 6132 . - . ID=Phyra86825.1;Parent=Phyra86825;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1308 1 6142 scaffold_1308 . biological_region 1582 1587 0.999 - . logic_name=eponine scaffold_1308 . biological_region 1639 1642 0.999 + . logic_name=eponine scaffold_1308 . repeat_region 2464 2674 . ? . description=dust scaffold_1308 . repeat_region 3766 5142 . ? . description=dust scaffold_1308 . repeat_region 5914 6140 . ? . description=trf scaffold_1308 ensembl protein_coding_gene 1039 1614 . - . ID=Phyra86822;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1308000001;logic_name=jgi_phyra1 scaffold_1308 ensembl transcript 1039 1614 . - . ID=Phyra86822;Parent=Phyra86822;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1308 . CDS 1039 1614 . - 0 ID=Phyra86822;Parent=Phyra86822;rank=1 scaffold_1308 . exon 1039 1614 . - . ID=Phyra86822.1;Parent=Phyra86822;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1307 1 6149 scaffold_1307 . repeat_region 1001 1144 . ? . description=trf scaffold_1307 . repeat_region 1080 1144 . ? . description=trf scaffold_1307 . biological_region 1086 1088 0.999 + . logic_name=eponine scaffold_1307 . repeat_region 2100 2757 . ? . description=dust scaffold_1307 . repeat_region 4436 5046 . ? . description=dust scaffold_1307 ensembl protein_coding_gene 5049 6143 . + . ID=Phyra41159;biotype=protein_coding;external_name=gwEuk.1307.2.1;logic_name=jgi_phyra1 scaffold_1307 ensembl transcript 5049 6143 . + . ID=Phyra41159;Parent=Phyra41159;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1307 . CDS 5049 6143 . + 0 ID=Phyra41159;Parent=Phyra41159;rank=1 scaffold_1307 . exon 5049 6143 . + . ID=Phyra41159.1;Parent=Phyra41159;constitutive=1;rank=1 scaffold_1307 ensembl protein_coding_gene 521 3620 . + . ID=Phyra86820;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1307000001;logic_name=jgi_phyra1 scaffold_1307 ensembl transcript 521 3620 . + . ID=Phyra86820;Parent=Phyra86820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1307 . CDS 521 666 . + 0 ID=Phyra86820;Parent=Phyra86820;rank=1 scaffold_1307 . exon 521 666 . + . ID=Phyra86820.1;Parent=Phyra86820;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1307 . CDS 735 2001 . + 0 ID=Phyra86820;Parent=Phyra86820;rank=2 scaffold_1307 . exon 735 2001 . + . ID=Phyra86820.2;Parent=Phyra86820;constitutive=1;ensembl_phase=2;rank=2 scaffold_1307 . CDS 2976 3620 . + 0 ID=Phyra86820;Parent=Phyra86820;rank=3 scaffold_1307 . exon 2976 3620 . + . ID=Phyra86820.3;Parent=Phyra86820;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1306 1 6163 scaffold_1306 . repeat_region 3169 3389 . + . description=Gypsy-1-I_PI-int scaffold_1306 . repeat_region 4937 6150 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1305 1 6188 scaffold_1305 . biological_region 2097 2102 0.999 + . logic_name=eponine scaffold_1305 . repeat_region 2416 2423 . ? . description=dust scaffold_1305 . repeat_region 2819 2826 . ? . description=dust scaffold_1305 . repeat_region 4315 4322 . ? . description=dust scaffold_1305 ensembl protein_coding_gene 52 2143 . - . ID=Phyra86818;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1305000001;logic_name=jgi_phyra1 scaffold_1305 ensembl transcript 52 2143 . - . ID=Phyra86818;Parent=Phyra86818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1305 . CDS 52 2143 . - 0 ID=Phyra86818;Parent=Phyra86818;rank=1 scaffold_1305 . exon 52 2143 . - . ID=Phyra86818.1;Parent=Phyra86818;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1305 ensembl protein_coding_gene 4547 6184 . + . ID=Phyra86819;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1305000002;logic_name=jgi_phyra1 scaffold_1305 ensembl transcript 4547 6184 . + . ID=Phyra86819;Parent=Phyra86819;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1305 . CDS 4547 6184 . + 0 ID=Phyra86819;Parent=Phyra86819;rank=1 scaffold_1305 . exon 4547 6184 . + . ID=Phyra86819.1;Parent=Phyra86819;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1304 1 6189 scaffold_1304 . repeat_region 629 660 . ? . description=trf scaffold_1304 . repeat_region 1511 2076 . ? . description=dust scaffold_1304 . repeat_region 2911 2953 . ? . description=trf scaffold_1304 . repeat_region 4781 4788 . ? . description=dust scaffold_1304 ensembl protein_coding_gene 3559 4283 . - . ID=Phyra86817;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1304000001;logic_name=jgi_phyra1 scaffold_1304 ensembl transcript 3559 4283 . - . ID=Phyra86817;Parent=Phyra86817;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1304 . CDS 3559 3758 . - 0 ID=Phyra86817;Parent=Phyra86817;rank=2 scaffold_1304 . exon 3559 3758 . - . ID=Phyra86817.2;Parent=Phyra86817;constitutive=1;ensembl_phase=1;rank=2 scaffold_1304 . CDS 3782 4283 . - 0 ID=Phyra86817;Parent=Phyra86817;rank=1 scaffold_1304 . exon 3782 4283 . - . ID=Phyra86817.1;Parent=Phyra86817;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1316 1 6245 scaffold_1316 . repeat_region 1579 1586 . ? . description=dust scaffold_1316 . repeat_region 2224 2261 . ? . description=trf scaffold_1316 . repeat_region 2506 4770 . ? . description=dust scaffold_1316 . biological_region 5519 5524 0.999 - . logic_name=eponine scaffold_1316 ensembl protein_coding_gene 56 1250 . - . ID=Phyra86834;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1316000001;logic_name=jgi_phyra1 scaffold_1316 ensembl transcript 56 1250 . - . ID=Phyra86834;Parent=Phyra86834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1316 . CDS 56 1250 . - 0 ID=Phyra86834;Parent=Phyra86834;rank=1 scaffold_1316 . exon 56 1250 . - . ID=Phyra86834.1;Parent=Phyra86834;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1316 ensembl protein_coding_gene 2351 6245 . - . ID=Phyra86835;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1316000002;logic_name=jgi_phyra1 scaffold_1316 ensembl transcript 2351 6245 . - . ID=Phyra86835;Parent=Phyra86835;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1316 . CDS 2351 2470 . - 0 ID=Phyra86835;Parent=Phyra86835;rank=2 scaffold_1316 . exon 2351 2470 . - . ID=Phyra86835.2;Parent=Phyra86835;constitutive=1;rank=2 scaffold_1316 . CDS 4826 6244 . - 0 ID=Phyra86835;Parent=Phyra86835;rank=1 scaffold_1316 . exon 4826 6245 . - . ID=Phyra86835.1;Parent=Phyra86835;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1303 1 6285 scaffold_1303 . biological_region 134 135 0.999 - . logic_name=eponine scaffold_1303 . biological_region 297 300 0.999 - . logic_name=eponine scaffold_1303 . biological_region 531 537 0.999 + . logic_name=eponine scaffold_1303 . repeat_region 546 608 . ? . description=dust scaffold_1303 . biological_region 569 576 0.999 + . logic_name=eponine scaffold_1303 . biological_region 587 590 0.999 - . logic_name=eponine scaffold_1303 . biological_region 611 616 0.999 - . logic_name=eponine scaffold_1303 . biological_region 841 847 0.999 - . logic_name=eponine scaffold_1303 . biological_region 1060 1061 0.999 - . logic_name=eponine scaffold_1303 . biological_region 1410 1413 0.999 + . logic_name=eponine scaffold_1303 . repeat_region 1502 1551 . ? . description=dust scaffold_1303 . repeat_region 1715 1756 . ? . description=dust scaffold_1303 . biological_region 1788 1790 0.999 + . logic_name=eponine scaffold_1303 . repeat_region 1813 1872 . ? . description=dust scaffold_1303 . biological_region 1823 1828 0.999 + . logic_name=eponine scaffold_1303 . biological_region 1891 1895 0.999 - . logic_name=eponine scaffold_1303 . biological_region 2046 2051 0.999 - . logic_name=eponine scaffold_1303 . repeat_region 2338 2537 . ? . description=dust scaffold_1303 . biological_region 2765 2767 0.999 - . logic_name=eponine scaffold_1303 . repeat_region 3618 3649 . ? . description=trf scaffold_1303 . repeat_region 3624 3649 . ? . description=trf scaffold_1303 . biological_region 3636 3637 0.999 - . logic_name=eponine scaffold_1303 . biological_region 3654 3661 0.999 - . logic_name=eponine scaffold_1303 . biological_region 3695 3696 0.999 - . logic_name=eponine scaffold_1303 . biological_region 3711 3713 0.999 + . logic_name=eponine scaffold_1303 . biological_region 4188 4193 0.999 - . logic_name=eponine scaffold_1303 . biological_region 4922 4926 0.999 + . logic_name=eponine scaffold_1303 . biological_region 5344 5344 0.999 + . logic_name=eponine scaffold_1303 . biological_region 5350 5353 0.999 - . logic_name=eponine scaffold_1303 . biological_region 5415 5418 0.999 - . logic_name=eponine scaffold_1303 . biological_region 5470 5474 0.999 + . logic_name=eponine scaffold_1303 . biological_region 5546 5550 0.999 + . logic_name=eponine scaffold_1303 . biological_region 5939 5943 0.999 + . logic_name=eponine scaffold_1303 . biological_region 6104 6107 0.999 + . logic_name=eponine scaffold_1303 . biological_region 6124 6126 0.999 + . logic_name=eponine scaffold_1303 . biological_region 6170 6174 0.999 - . logic_name=eponine scaffold_1303 ensembl protein_coding_gene 61 6193 . + . ID=Phyra86816;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1303000001;logic_name=jgi_phyra1 scaffold_1303 ensembl transcript 61 6193 . + . ID=Phyra86816;Parent=Phyra86816;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1303 . exon 61 1496 . + . ID=Phyra86816.1;Parent=Phyra86816;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1303 . CDS 62 1496 . + 0 ID=Phyra86816;Parent=Phyra86816;rank=1 scaffold_1303 . CDS 1654 2244 . + 0 ID=Phyra86816;Parent=Phyra86816;rank=2 scaffold_1303 . exon 1654 2244 . + . ID=Phyra86816.2;Parent=Phyra86816;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1303 . CDS 2613 6193 . + 0 ID=Phyra86816;Parent=Phyra86816;rank=3 scaffold_1303 . exon 2613 6193 . + . ID=Phyra86816.3;Parent=Phyra86816;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1301 1 6295 scaffold_1301 . repeat_region 1273 2390 . ? . description=dust scaffold_1301 . repeat_region 3987 5089 . ? . description=dust scaffold_1301 . biological_region 5336 5336 0.999 - . logic_name=eponine scaffold_1301 ensembl protein_coding_gene 2623 3024 . - . ID=Phyra41150;biotype=protein_coding;external_name=gwEuk.1301.5.1;logic_name=jgi_phyra1 scaffold_1301 ensembl transcript 2623 3024 . - . ID=Phyra41150;Parent=Phyra41150;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1301 . CDS 2623 3024 . - 0 ID=Phyra41150;Parent=Phyra41150;rank=1 scaffold_1301 . exon 2623 3024 . - . ID=Phyra41150.1;Parent=Phyra41150;constitutive=1;rank=1 scaffold_1301 ensembl protein_coding_gene 3481 3768 . - . ID=Phyra41151;biotype=protein_coding;external_name=gwEuk.1301.6.1;logic_name=jgi_phyra1 scaffold_1301 ensembl transcript 3481 3768 . - . ID=Phyra41151;Parent=Phyra41151;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1301 . CDS 3481 3768 . - 0 ID=Phyra41151;Parent=Phyra41151;rank=1 scaffold_1301 . exon 3481 3768 . - . ID=Phyra41151.1;Parent=Phyra41151;constitutive=1;rank=1 scaffold_1301 ensembl protein_coding_gene 230 1123 . + . ID=Phyra86813;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1301000001;logic_name=jgi_phyra1 scaffold_1301 ensembl transcript 230 1123 . + . ID=Phyra86813;Parent=Phyra86813;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1301 . CDS 230 1123 . + 0 ID=Phyra86813;Parent=Phyra86813;rank=1 scaffold_1301 . exon 230 1123 . + . ID=Phyra86813.1;Parent=Phyra86813;constitutive=1;rank=1 scaffold_1301 ensembl protein_coding_gene 5213 5769 . - . ID=Phyra86814;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1301000002;logic_name=jgi_phyra1 scaffold_1301 ensembl transcript 5213 5769 . - . ID=Phyra86814;Parent=Phyra86814;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1301 . CDS 5213 5231 . - 0 ID=Phyra86814;Parent=Phyra86814;rank=2 scaffold_1301 . exon 5213 5231 . - . ID=Phyra86814.2;Parent=Phyra86814;constitutive=1;ensembl_phase=2;rank=2 scaffold_1301 . CDS 5252 5769 . - 0 ID=Phyra86814;Parent=Phyra86814;rank=1 scaffold_1301 . exon 5252 5769 . - . ID=Phyra86814.1;Parent=Phyra86814;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1300 1 6323 scaffold_1300 . repeat_region 268 353 . ? . description=trf scaffold_1300 . repeat_region 1884 2028 . ? . description=trf scaffold_1300 . repeat_region 1985 2202 . ? . description=trf scaffold_1300 . biological_region 2060 2063 0.999 - . logic_name=eponine scaffold_1300 . repeat_region 2159 2603 . ? . description=trf scaffold_1300 . biological_region 2266 2268 0.999 + . logic_name=eponine scaffold_1300 . biological_region 2295 2299 0.999 + . logic_name=eponine scaffold_1300 . biological_region 2300 2302 0.999 - . logic_name=eponine scaffold_1300 . biological_region 2327 2332 0.999 + . logic_name=eponine scaffold_1300 . biological_region 2397 2399 0.999 - . logic_name=eponine scaffold_1300 . biological_region 2460 2466 0.999 - . logic_name=eponine scaffold_1300 . biological_region 2487 2493 0.999 - . logic_name=eponine scaffold_1300 . biological_region 2518 2518 0.999 + . logic_name=eponine scaffold_1300 . repeat_region 3311 3318 . ? . description=dust scaffold_1300 . repeat_region 4200 4209 . ? . description=dust scaffold_1300 . repeat_region 4602 4888 . ? . description=trf scaffold_1300 . repeat_region 5570 5604 . ? . description=trf scaffold_1300 . repeat_region 5883 5897 . ? . description=dust scaffold_1300 ensembl protein_coding_gene 1725 2819 . - . ID=Phyra86811;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1300000001;logic_name=jgi_phyra1 scaffold_1300 ensembl transcript 1725 2819 . - . ID=Phyra86811;Parent=Phyra86811;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1300 . CDS 1725 2819 . - 0 ID=Phyra86811;Parent=Phyra86811;rank=1 scaffold_1300 . exon 1725 2819 . - . ID=Phyra86811.1;Parent=Phyra86811;constitutive=1;rank=1 scaffold_1300 ensembl protein_coding_gene 4571 5023 . - . ID=Phyra86812;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1300000002;logic_name=jgi_phyra1 scaffold_1300 ensembl transcript 4571 5023 . - . ID=Phyra86812;Parent=Phyra86812;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1300 . CDS 4571 5023 . - 0 ID=Phyra86812;Parent=Phyra86812;rank=1 scaffold_1300 . exon 4571 5023 . - . ID=Phyra86812.1;Parent=Phyra86812;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1299 1 6342 scaffold_1299 . biological_region 4208 4208 0.999 + . logic_name=eponine scaffold_1299 . biological_region 4367 4370 0.999 + . logic_name=eponine scaffold_1299 . biological_region 4424 4428 0.999 - . logic_name=eponine scaffold_1299 . biological_region 4502 4505 0.999 + . logic_name=eponine scaffold_1299 . biological_region 4593 4599 0.999 + . logic_name=eponine scaffold_1299 . repeat_region 4673 4732 . ? . description=dust scaffold_1299 . biological_region 4718 4719 0.999 + . logic_name=eponine scaffold_1299 . biological_region 4741 4744 0.999 - . logic_name=eponine scaffold_1299 . biological_region 4766 4768 0.999 + . logic_name=eponine scaffold_1299 . biological_region 4777 4780 0.999 - . logic_name=eponine scaffold_1299 . biological_region 4794 4802 0.999 - . logic_name=eponine scaffold_1299 . biological_region 4850 4858 0.999 + . logic_name=eponine scaffold_1299 . biological_region 4979 4982 0.999 + . logic_name=eponine scaffold_1299 . biological_region 5056 5063 0.999 - . logic_name=eponine scaffold_1299 . biological_region 5079 5085 0.999 - . logic_name=eponine scaffold_1299 . biological_region 5316 5322 0.999 + . logic_name=eponine scaffold_1299 . biological_region 5427 5431 0.999 - . logic_name=eponine scaffold_1299 . biological_region 5580 5581 0.999 - . logic_name=eponine scaffold_1299 ensembl protein_coding_gene 1180 5018 . - . ID=Phyra86809;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1299000001;logic_name=jgi_phyra1 scaffold_1299 ensembl transcript 1180 5018 . - . ID=Phyra86809;Parent=Phyra86809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1299 . CDS 1180 1190 . - 0 ID=Phyra86809;Parent=Phyra86809;rank=2 scaffold_1299 . exon 1180 1190 . - . ID=Phyra86809.2;Parent=Phyra86809;constitutive=1;ensembl_phase=1;rank=2 scaffold_1299 . CDS 1430 5018 . - 0 ID=Phyra86809;Parent=Phyra86809;rank=1 scaffold_1299 . exon 1430 5018 . - . ID=Phyra86809.1;Parent=Phyra86809;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1299 ensembl protein_coding_gene 5241 6023 . + . ID=Phyra86810;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1299000002;logic_name=jgi_phyra1 scaffold_1299 ensembl transcript 5241 6023 . + . ID=Phyra86810;Parent=Phyra86810;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1299 . CDS 5241 6023 . + 0 ID=Phyra86810;Parent=Phyra86810;rank=1 scaffold_1299 . exon 5241 6023 . + . ID=Phyra86810.1;Parent=Phyra86810;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1297 1 6424 scaffold_1297 . repeat_region 3360 3469 . ? . description=trf scaffold_1297 . repeat_region 4045 4054 . ? . description=dust scaffold_1297 ensembl protein_coding_gene 3678 4039 . + . ID=Phyra40921;biotype=protein_coding;external_name=gwEuk.1297.9.1;logic_name=jgi_phyra1 scaffold_1297 ensembl transcript 3678 4039 . + . ID=Phyra40921;Parent=Phyra40921;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1297 . CDS 3678 3842 . + 0 ID=Phyra40921;Parent=Phyra40921;rank=1 scaffold_1297 . exon 3678 3842 . + . ID=Phyra40921.1;Parent=Phyra40921;constitutive=1;rank=1 scaffold_1297 . CDS 3917 4039 . + 0 ID=Phyra40921;Parent=Phyra40921;rank=2 scaffold_1297 . exon 3917 4039 . + . ID=Phyra40921.2;Parent=Phyra40921;constitutive=1;rank=2 scaffold_1297 ensembl protein_coding_gene 4761 6422 . - . ID=Phyra40923;biotype=protein_coding;external_name=gwEuk.1297.11.1;logic_name=jgi_phyra1 scaffold_1297 ensembl transcript 4761 6422 . - . ID=Phyra40923;Parent=Phyra40923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1297 . CDS 4761 6422 . - 0 ID=Phyra40923;Parent=Phyra40923;rank=1 scaffold_1297 . exon 4761 6422 . - . ID=Phyra40923.1;Parent=Phyra40923;constitutive=1;rank=1 scaffold_1297 ensembl protein_coding_gene 1806 2690 . + . ID=Phyra72460;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1297000001;logic_name=jgi_phyra1 scaffold_1297 ensembl transcript 1806 2690 . + . ID=Phyra72460;Parent=Phyra72460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1297 . CDS 1806 2690 . + 0 ID=Phyra72460;Parent=Phyra72460;rank=1 scaffold_1297 . exon 1806 2690 . + . ID=Phyra72460.1;Parent=Phyra72460;constitutive=1;rank=1 scaffold_1297 ensembl protein_coding_gene 5 496 . - . ID=Phyra86805;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1297000001;logic_name=jgi_phyra1 scaffold_1297 ensembl transcript 5 496 . - . ID=Phyra86805;Parent=Phyra86805;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1297 . CDS 5 496 . - 0 ID=Phyra86805;Parent=Phyra86805;rank=1 scaffold_1297 . exon 5 496 . - . ID=Phyra86805.1;Parent=Phyra86805;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1296 1 6531 scaffold_1296 . repeat_region 1040 1106 . ? . description=trf scaffold_1296 . repeat_region 1283 1319 . + . description=GypsyPi-1c_LTR scaffold_1296 . repeat_region 1320 2930 . + . description=GypsyPi-1c_I-int scaffold_1296 . repeat_region 3024 3531 . ? . description=dust scaffold_1296 . repeat_region 3532 6023 . + . description=GypsyPi-1c_I-int scaffold_1296 . biological_region 3660 3660 0.999 + . logic_name=eponine scaffold_1296 . biological_region 4609 4611 0.999 + . logic_name=eponine scaffold_1296 ensembl protein_coding_gene 3614 5729 . + . ID=Phyra86803;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1296000001;logic_name=jgi_phyra1 scaffold_1296 ensembl transcript 3614 5729 . + . ID=Phyra86803;Parent=Phyra86803;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1296 . CDS 3614 5209 . + 0 ID=Phyra86803;Parent=Phyra86803;rank=1 scaffold_1296 . exon 3614 5209 . + . ID=Phyra86803.1;Parent=Phyra86803;constitutive=1;rank=1 scaffold_1296 . CDS 5329 5625 . + 0 ID=Phyra86803;Parent=Phyra86803;rank=2 scaffold_1296 . exon 5329 5625 . + . ID=Phyra86803.2;Parent=Phyra86803;constitutive=1;rank=2 scaffold_1296 . CDS 5724 5729 . + 0 ID=Phyra86803;Parent=Phyra86803;rank=3 scaffold_1296 . exon 5724 5729 . + . ID=Phyra86803.3;Parent=Phyra86803;constitutive=1;rank=3 scaffold_1296 ensembl protein_coding_gene 5958 6515 . - . ID=Phyra86804;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1296000002;logic_name=jgi_phyra1 scaffold_1296 ensembl transcript 5958 6515 . - . ID=Phyra86804;Parent=Phyra86804;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1296 . CDS 5958 6515 . - 0 ID=Phyra86804;Parent=Phyra86804;rank=1 scaffold_1296 . exon 5958 6515 . - . ID=Phyra86804.1;Parent=Phyra86804;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1295 1 6551 scaffold_1295 . repeat_region 565 613 . ? . description=trf scaffold_1295 . repeat_region 601 637 . ? . description=trf scaffold_1295 . biological_region 2679 2680 0.999 + . logic_name=eponine scaffold_1295 . biological_region 4540 4545 0.999 + . logic_name=eponine scaffold_1295 . repeat_region 4594 4620 . ? . description=trf scaffold_1295 . biological_region 5765 5771 0.999 + . logic_name=eponine scaffold_1295 . biological_region 6024 6030 0.999 - . logic_name=eponine scaffold_1295 ensembl protein_coding_gene 695 1351 . - . ID=Phyra86799;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1295000001;logic_name=jgi_phyra1 scaffold_1295 ensembl transcript 695 1351 . - . ID=Phyra86799;Parent=Phyra86799;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1295 . CDS 695 1351 . - 0 ID=Phyra86799;Parent=Phyra86799;rank=1 scaffold_1295 . exon 695 1351 . - . ID=Phyra86799.1;Parent=Phyra86799;constitutive=1;rank=1 scaffold_1295 ensembl protein_coding_gene 1873 3409 . - . ID=Phyra86800;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1295000002;logic_name=jgi_phyra1 scaffold_1295 ensembl transcript 1873 3409 . - . ID=Phyra86800;Parent=Phyra86800;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1295 . CDS 1873 2530 . - 0 ID=Phyra86800;Parent=Phyra86800;rank=2 scaffold_1295 . exon 1873 2530 . - . ID=Phyra86800.2;Parent=Phyra86800;constitutive=1;ensembl_phase=2;rank=2 scaffold_1295 . CDS 2727 3409 . - 0 ID=Phyra86800;Parent=Phyra86800;rank=1 scaffold_1295 . exon 2727 3409 . - . ID=Phyra86800.1;Parent=Phyra86800;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1295 ensembl protein_coding_gene 3661 5361 . - . ID=Phyra86801;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1295000003;logic_name=jgi_phyra1 scaffold_1295 ensembl transcript 3661 5361 . - . ID=Phyra86801;Parent=Phyra86801;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1295 . CDS 3661 5361 . - 0 ID=Phyra86801;Parent=Phyra86801;rank=1 scaffold_1295 . exon 3661 5361 . - . ID=Phyra86801.1;Parent=Phyra86801;constitutive=1;rank=1 scaffold_1295 ensembl protein_coding_gene 5909 6467 . + . ID=Phyra86802;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1295000004;logic_name=jgi_phyra1 scaffold_1295 ensembl transcript 5909 6467 . + . ID=Phyra86802;Parent=Phyra86802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1295 . CDS 5909 6036 . + 0 ID=Phyra86802;Parent=Phyra86802;rank=1 scaffold_1295 . exon 5909 6036 . + . ID=Phyra86802.1;Parent=Phyra86802;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1295 . CDS 6113 6467 . + 0 ID=Phyra86802;Parent=Phyra86802;rank=2 scaffold_1295 . exon 6113 6467 . + . ID=Phyra86802.2;Parent=Phyra86802;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1294 1 6572 scaffold_1294 . biological_region 5050 5057 0.999 + . logic_name=eponine scaffold_1294 . biological_region 5153 5155 0.999 + . logic_name=eponine scaffold_1294 . biological_region 5221 5225 0.999 - . logic_name=eponine scaffold_1294 . biological_region 5457 5459 0.999 - . logic_name=eponine scaffold_1294 . biological_region 5512 5517 0.999 + . logic_name=eponine scaffold_1294 . biological_region 5658 5663 0.999 + . logic_name=eponine scaffold_1294 . repeat_region 5899 5955 . ? . description=trf scaffold_1294 . repeat_region 5899 5955 . ? . description=trf scaffold_1294 . repeat_region 6027 6111 . ? . description=trf scaffold_1294 . repeat_region 6219 6251 . ? . description=trf scaffold_1294 ensembl protein_coding_gene 618 2711 . + . ID=Phyra86797;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1294000001;logic_name=jgi_phyra1 scaffold_1294 ensembl transcript 618 2711 . + . ID=Phyra86797;Parent=Phyra86797;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1294 . CDS 618 2711 . + 0 ID=Phyra86797;Parent=Phyra86797;rank=1 scaffold_1294 . exon 618 2711 . + . ID=Phyra86797.1;Parent=Phyra86797;constitutive=1;rank=1 scaffold_1294 ensembl protein_coding_gene 4656 5696 . - . ID=Phyra86798;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1294000002;logic_name=jgi_phyra1 scaffold_1294 ensembl transcript 4656 5696 . - . ID=Phyra86798;Parent=Phyra86798;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1294 . CDS 4656 5696 . - 0 ID=Phyra86798;Parent=Phyra86798;rank=1 scaffold_1294 . exon 4656 5696 . - . ID=Phyra86798.1;Parent=Phyra86798;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1285 1 6606 scaffold_1285 . repeat_region 4040 4724 . ? . description=dust scaffold_1285 . repeat_region 5838 5867 . ? . description=trf scaffold_1285 ensembl protein_coding_gene 5296 6592 . + . ID=Phyra86783;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1285000001;logic_name=jgi_phyra1 scaffold_1285 ensembl transcript 5296 6592 . + . ID=Phyra86783;Parent=Phyra86783;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1285 . CDS 5296 6592 . + 0 ID=Phyra86783;Parent=Phyra86783;rank=1 scaffold_1285 . exon 5296 6592 . + . ID=Phyra86783.1;Parent=Phyra86783;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1298 1 6606 scaffold_1298 . biological_region 382 384 0.999 + . logic_name=eponine scaffold_1298 . repeat_region 1714 2514 . ? . description=dust scaffold_1298 . repeat_region 4095 5078 . ? . description=dust scaffold_1298 . biological_region 6397 6398 0.999 + . logic_name=eponine scaffold_1298 ensembl protein_coding_gene 102 2771 . - . ID=Phyra86808;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1298000001;logic_name=jgi_phyra1 scaffold_1298 ensembl transcript 102 2771 . - . ID=Phyra86808;Parent=Phyra86808;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1298 . CDS 102 685 . - 0 ID=Phyra86808;Parent=Phyra86808;rank=3 scaffold_1298 . exon 102 685 . - . ID=Phyra86808.3;Parent=Phyra86808;constitutive=1;ensembl_phase=1;rank=3 scaffold_1298 . CDS 753 1656 . - 0 ID=Phyra86808;Parent=Phyra86808;rank=2 scaffold_1298 . exon 753 1656 . - . ID=Phyra86808.2;Parent=Phyra86808;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1298 . CDS 2730 2771 . - 0 ID=Phyra86808;Parent=Phyra86808;rank=1 scaffold_1298 . exon 2730 2771 . - . ID=Phyra86808.1;Parent=Phyra86808;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1293 1 6610 scaffold_1293 . repeat_region 2605 3012 . ? . description=dust scaffold_1293 . biological_region 3337 3338 0.999 - . logic_name=eponine scaffold_1293 . repeat_region 4087 4202 . ? . description=trf scaffold_1293 . biological_region 4370 4374 0.999 - . logic_name=eponine scaffold_1293 . repeat_region 4405 4413 . ? . description=dust scaffold_1293 . repeat_region 4919 5676 . ? . description=dust scaffold_1293 . repeat_region 6199 6297 . + . description=GypsyPi-1c_I-int scaffold_1293 ensembl protein_coding_gene 1057 4342 . - . ID=Phyra86796;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1293000001;logic_name=jgi_phyra1 scaffold_1293 ensembl transcript 1057 4342 . - . ID=Phyra86796;Parent=Phyra86796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1293 . CDS 1057 1291 . - 0 ID=Phyra86796;Parent=Phyra86796;rank=9 scaffold_1293 . exon 1057 1291 . - . ID=Phyra86796.9;Parent=Phyra86796;constitutive=1;ensembl_phase=2;rank=9 scaffold_1293 . CDS 1353 1597 . - 0 ID=Phyra86796;Parent=Phyra86796;rank=8 scaffold_1293 . exon 1353 1597 . - . ID=Phyra86796.8;Parent=Phyra86796;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_1293 . CDS 1679 2006 . - 0 ID=Phyra86796;Parent=Phyra86796;rank=7 scaffold_1293 . exon 1679 2006 . - . ID=Phyra86796.7;Parent=Phyra86796;constitutive=1;ensembl_phase=2;rank=7 scaffold_1293 . CDS 2070 2326 . - 0 ID=Phyra86796;Parent=Phyra86796;rank=6 scaffold_1293 . exon 2070 2326 . - . ID=Phyra86796.6;Parent=Phyra86796;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_1293 . CDS 2450 2492 . - 0 ID=Phyra86796;Parent=Phyra86796;rank=5 scaffold_1293 . exon 2450 2492 . - . ID=Phyra86796.5;Parent=Phyra86796;constitutive=1;ensembl_phase=2;rank=5 scaffold_1293 . CDS 3047 3128 . - 0 ID=Phyra86796;Parent=Phyra86796;rank=4 scaffold_1293 . exon 3047 3128 . - . ID=Phyra86796.4;Parent=Phyra86796;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_1293 . CDS 3251 3413 . - 0 ID=Phyra86796;Parent=Phyra86796;rank=3 scaffold_1293 . exon 3251 3413 . - . ID=Phyra86796.3;Parent=Phyra86796;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1293 . CDS 3559 3602 . - 0 ID=Phyra86796;Parent=Phyra86796;rank=2 scaffold_1293 . exon 3559 3602 . - . ID=Phyra86796.2;Parent=Phyra86796;constitutive=1;ensembl_phase=1;rank=2 scaffold_1293 . CDS 3703 4342 . - 0 ID=Phyra86796;Parent=Phyra86796;rank=1 scaffold_1293 . exon 3703 4342 . - . ID=Phyra86796.1;Parent=Phyra86796;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1292 1 6615 scaffold_1292 . repeat_region 1677 1758 . ? . description=trf scaffold_1292 . repeat_region 4376 4383 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1291 1 6628 scaffold_1291 . biological_region 2610 2614 0.999 + . logic_name=eponine scaffold_1291 . repeat_region 2687 2720 . ? . description=trf scaffold_1291 . biological_region 3098 3100 0.999 - . logic_name=eponine scaffold_1291 . biological_region 3154 3155 0.999 + . logic_name=eponine scaffold_1291 . biological_region 3174 3176 0.999 + . logic_name=eponine scaffold_1291 . biological_region 3380 3385 0.999 - . logic_name=eponine scaffold_1291 . biological_region 3878 3882 0.999 - . logic_name=eponine scaffold_1291 . biological_region 4637 4642 0.999 + . logic_name=eponine scaffold_1291 . biological_region 5978 5985 0.999 + . logic_name=eponine scaffold_1291 . biological_region 6076 6078 0.999 - . logic_name=eponine scaffold_1291 . biological_region 6212 6216 0.999 + . logic_name=eponine scaffold_1291 . repeat_region 6510 6533 . ? . description=dust scaffold_1291 ensembl protein_coding_gene 2360 3469 . - . ID=Phyra72459;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1291000001;logic_name=jgi_phyra1 scaffold_1291 ensembl transcript 2360 3469 . - . ID=Phyra72459;Parent=Phyra72459;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1291 . CDS 2360 3469 . - 0 ID=Phyra72459;Parent=Phyra72459;rank=1 scaffold_1291 . exon 2360 3469 . - . ID=Phyra72459.1;Parent=Phyra72459;constitutive=1;rank=1 scaffold_1291 ensembl protein_coding_gene 63 553 . + . ID=Phyra86791;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1291000001;logic_name=jgi_phyra1 scaffold_1291 ensembl transcript 63 553 . + . ID=Phyra86791;Parent=Phyra86791;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1291 . exon 63 553 . + . ID=Phyra86791.1;Parent=Phyra86791;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1291 . CDS 65 553 . + 0 ID=Phyra86791;Parent=Phyra86791;rank=1 scaffold_1291 ensembl protein_coding_gene 1588 2001 . + . ID=Phyra86792;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1291000002;logic_name=jgi_phyra1 scaffold_1291 ensembl transcript 1588 2001 . + . ID=Phyra86792;Parent=Phyra86792;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1291 . CDS 1588 2001 . + 0 ID=Phyra86792;Parent=Phyra86792;rank=1 scaffold_1291 . exon 1588 2001 . + . ID=Phyra86792.1;Parent=Phyra86792;constitutive=1;rank=1 scaffold_1291 ensembl protein_coding_gene 3681 4058 . + . ID=Phyra86794;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1291000004;logic_name=jgi_phyra1 scaffold_1291 ensembl transcript 3681 4058 . + . ID=Phyra86794;Parent=Phyra86794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1291 . CDS 3681 4058 . + 0 ID=Phyra86794;Parent=Phyra86794;rank=1 scaffold_1291 . exon 3681 4058 . + . ID=Phyra86794.1;Parent=Phyra86794;constitutive=1;rank=1 scaffold_1291 ensembl protein_coding_gene 4624 6084 . - . ID=Phyra86795;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1291000005;logic_name=jgi_phyra1 scaffold_1291 ensembl transcript 4624 6084 . - . ID=Phyra86795;Parent=Phyra86795;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1291 . CDS 4624 4791 . - 0 ID=Phyra86795;Parent=Phyra86795;rank=6 scaffold_1291 . exon 4624 4791 . - . ID=Phyra86795.6;Parent=Phyra86795;constitutive=1;rank=6 scaffold_1291 . CDS 4860 4972 . - 0 ID=Phyra86795;Parent=Phyra86795;rank=5 scaffold_1291 . exon 4860 4972 . - . ID=Phyra86795.5;Parent=Phyra86795;constitutive=1;ensembl_phase=1;rank=5 scaffold_1291 . CDS 5049 5279 . - 0 ID=Phyra86795;Parent=Phyra86795;rank=4 scaffold_1291 . exon 5049 5279 . - . ID=Phyra86795.4;Parent=Phyra86795;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1291 . CDS 5322 5402 . - 0 ID=Phyra86795;Parent=Phyra86795;rank=3 scaffold_1291 . exon 5322 5402 . - . ID=Phyra86795.3;Parent=Phyra86795;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1291 . CDS 5466 5615 . - 0 ID=Phyra86795;Parent=Phyra86795;rank=2 scaffold_1291 . exon 5466 5615 . - . ID=Phyra86795.2;Parent=Phyra86795;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1291 . CDS 5688 6084 . - 0 ID=Phyra86795;Parent=Phyra86795;rank=1 scaffold_1291 . exon 5688 6084 . - . ID=Phyra86795.1;Parent=Phyra86795;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1302 1 6666 scaffold_1302 . repeat_region 518 576 . ? . description=dust scaffold_1302 . repeat_region 598 608 . ? . description=dust scaffold_1302 . repeat_region 611 2099 . ? . description=dust scaffold_1302 . biological_region 2920 2922 0.999 - . logic_name=eponine scaffold_1302 . repeat_region 3480 3755 . ? . description=dust scaffold_1302 . repeat_region 3763 3826 . ? . description=dust scaffold_1302 . repeat_region 3841 3852 . ? . description=dust scaffold_1302 . repeat_region 5045 5094 . ? . description=dust scaffold_1302 . repeat_region 5710 5784 . ? . description=dust scaffold_1302 ensembl protein_coding_gene 2244 5654 . + . ID=Phyra86815;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1302000001;logic_name=jgi_phyra1 scaffold_1302 ensembl transcript 2244 5654 . + . ID=Phyra86815;Parent=Phyra86815;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1302 . CDS 2244 3470 . + 0 ID=Phyra86815;Parent=Phyra86815;rank=1 scaffold_1302 . exon 2244 3470 . + . ID=Phyra86815.1;Parent=Phyra86815;constitutive=1;rank=1 scaffold_1302 . CDS 5151 5654 . + 0 ID=Phyra86815;Parent=Phyra86815;rank=2 scaffold_1302 . exon 5151 5654 . + . ID=Phyra86815.2;Parent=Phyra86815;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1290 1 6752 scaffold_1290 . biological_region 842 846 0.999 + . logic_name=eponine scaffold_1290 . repeat_region 1270 1360 . ? . description=trf scaffold_1290 ensembl protein_coding_gene 203 1490 . + . ID=Phyra86788;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1290000001;logic_name=jgi_phyra1 scaffold_1290 ensembl transcript 203 1490 . + . ID=Phyra86788;Parent=Phyra86788;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1290 . CDS 203 307 . + 0 ID=Phyra86788;Parent=Phyra86788;rank=1 scaffold_1290 . exon 203 307 . + . ID=Phyra86788.1;Parent=Phyra86788;constitutive=1;rank=1 scaffold_1290 . CDS 393 1490 . + 0 ID=Phyra86788;Parent=Phyra86788;rank=2 scaffold_1290 . exon 393 1490 . + . ID=Phyra86788.2;Parent=Phyra86788;constitutive=1;rank=2 scaffold_1290 ensembl protein_coding_gene 1739 4004 . - . ID=Phyra86789;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1290000002;logic_name=jgi_phyra1 scaffold_1290 ensembl transcript 1739 4004 . - . ID=Phyra86789;Parent=Phyra86789;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1290 . CDS 1739 1840 . - 0 ID=Phyra86789;Parent=Phyra86789;rank=7 scaffold_1290 . exon 1739 1840 . - . ID=Phyra86789.7;Parent=Phyra86789;constitutive=1;rank=7 scaffold_1290 . CDS 1903 2027 . - 0 ID=Phyra86789;Parent=Phyra86789;rank=6 scaffold_1290 . exon 1903 2027 . - . ID=Phyra86789.6;Parent=Phyra86789;constitutive=1;ensembl_phase=1;rank=6 scaffold_1290 . CDS 2315 2807 . - 0 ID=Phyra86789;Parent=Phyra86789;rank=5 scaffold_1290 . exon 2315 2807 . - . ID=Phyra86789.5;Parent=Phyra86789;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1290 . CDS 2885 3304 . - 0 ID=Phyra86789;Parent=Phyra86789;rank=4 scaffold_1290 . exon 2885 3304 . - . ID=Phyra86789.4;Parent=Phyra86789;constitutive=1;rank=4 scaffold_1290 . CDS 3375 3470 . - 0 ID=Phyra86789;Parent=Phyra86789;rank=3 scaffold_1290 . exon 3375 3470 . - . ID=Phyra86789.3;Parent=Phyra86789;constitutive=1;rank=3 scaffold_1290 . CDS 3527 3695 . - 0 ID=Phyra86789;Parent=Phyra86789;rank=2 scaffold_1290 . exon 3527 3695 . - . ID=Phyra86789.2;Parent=Phyra86789;constitutive=1;ensembl_phase=2;rank=2 scaffold_1290 . CDS 3760 4004 . - 0 ID=Phyra86789;Parent=Phyra86789;rank=1 scaffold_1290 . exon 3760 4004 . - . ID=Phyra86789.1;Parent=Phyra86789;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1290 ensembl protein_coding_gene 4286 6698 . + . ID=Phyra86790;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1290000003;logic_name=jgi_phyra1 scaffold_1290 ensembl transcript 4286 6698 . + . ID=Phyra86790;Parent=Phyra86790;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1290 . CDS 4286 6525 . + 0 ID=Phyra86790;Parent=Phyra86790;rank=1 scaffold_1290 . exon 4286 6525 . + . ID=Phyra86790.1;Parent=Phyra86790;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1290 . CDS 6591 6698 . + 0 ID=Phyra86790;Parent=Phyra86790;rank=2 scaffold_1290 . exon 6591 6698 . + . ID=Phyra86790.2;Parent=Phyra86790;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1289 1 6772 scaffold_1289 . biological_region 146 147 0.999 - . logic_name=eponine scaffold_1289 . repeat_region 2910 4792 . ? . description=dust scaffold_1289 . biological_region 6091 6095 0.999 - . logic_name=eponine scaffold_1289 . biological_region 6491 6494 0.999 - . logic_name=eponine scaffold_1289 ensembl protein_coding_gene 60 905 . + . ID=Phyra86786;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1289000001;logic_name=jgi_phyra1 scaffold_1289 ensembl transcript 60 905 . + . ID=Phyra86786;Parent=Phyra86786;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1289 . CDS 60 905 . + 0 ID=Phyra86786;Parent=Phyra86786;rank=1 scaffold_1289 . exon 60 905 . + . ID=Phyra86786.1;Parent=Phyra86786;constitutive=1;rank=1 scaffold_1289 ensembl protein_coding_gene 5905 6717 . + . ID=Phyra86787;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1289000002;logic_name=jgi_phyra1 scaffold_1289 ensembl transcript 5905 6717 . + . ID=Phyra86787;Parent=Phyra86787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1289 . CDS 5905 6717 . + 0 ID=Phyra86787;Parent=Phyra86787;rank=1 scaffold_1289 . exon 5905 6717 . + . ID=Phyra86787.1;Parent=Phyra86787;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1288 1 6796 scaffold_1288 . repeat_region 2617 2637 . ? . description=dust scaffold_1288 . repeat_region 3013 3199 . ? . description=dust scaffold_1288 . repeat_region 3503 3524 . ? . description=trf scaffold_1288 . repeat_region 3503 3524 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_614 1 6947 scaffold_614 . biological_region 532 538 0.999 + . logic_name=eponine scaffold_614 . biological_region 602 603 0.999 - . logic_name=eponine scaffold_614 . repeat_region 878 927 . ? . description=dust scaffold_614 . repeat_region 2548 3102 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1287 1 6967 scaffold_1287 . biological_region 1034 1039 0.999 - . logic_name=eponine scaffold_1287 . biological_region 1066 1068 0.999 + . logic_name=eponine scaffold_1287 . biological_region 1150 1155 0.999 + . logic_name=eponine scaffold_1287 . repeat_region 1478 1946 . ? . description=dust scaffold_1287 . repeat_region 2041 2100 . ? . description=trf scaffold_1287 . biological_region 3259 3262 0.999 - . logic_name=eponine scaffold_1287 . repeat_region 3906 4932 . ? . description=dust scaffold_1287 ensembl protein_coding_gene 130 1323 . - . ID=Phyra72458;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1287000001;logic_name=jgi_phyra1 scaffold_1287 ensembl transcript 130 1323 . - . ID=Phyra72458;Parent=Phyra72458;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1287 . CDS 130 1323 . - 0 ID=Phyra72458;Parent=Phyra72458;rank=1 scaffold_1287 . exon 130 1323 . - . ID=Phyra72458.1;Parent=Phyra72458;constitutive=1;rank=1 scaffold_1287 ensembl protein_coding_gene 3131 3586 . + . ID=Phyra86785;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1287000002;logic_name=jgi_phyra1 scaffold_1287 ensembl transcript 3131 3586 . + . ID=Phyra86785;Parent=Phyra86785;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1287 . CDS 3131 3586 . + 0 ID=Phyra86785;Parent=Phyra86785;rank=1 scaffold_1287 . exon 3131 3586 . + . ID=Phyra86785.1;Parent=Phyra86785;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1286 1 7051 scaffold_1286 . repeat_region 49 230 . ? . description=trf scaffold_1286 . biological_region 4770 4774 0.999 - . logic_name=eponine scaffold_1286 . repeat_region 4913 5225 . ? . description=dust scaffold_1286 . repeat_region 5452 5459 . ? . description=dust scaffold_1286 . repeat_region 5848 7051 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1283 1 7147 scaffold_1283 . repeat_region 4383 4390 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1281 1 7174 scaffold_1281 . repeat_region 4537 4584 . ? . description=trf scaffold_1281 . repeat_region 5363 5666 . + . description=GypsyPi-1c_LTR ##gff-version 3 ##sequence-region scaffold_1279 1 7205 scaffold_1279 . repeat_region 743 763 . ? . description=dust scaffold_1279 . repeat_region 870 2882 . ? . description=dust scaffold_1279 . repeat_region 5106 5219 . + . description=Gypsy-1-I_PI-int scaffold_1279 ensembl protein_coding_gene 5610 7105 . + . ID=Phyra86778;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1279000001;logic_name=jgi_phyra1 scaffold_1279 ensembl transcript 5610 7105 . + . ID=Phyra86778;Parent=Phyra86778;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1279 . CDS 5610 6392 . + 0 ID=Phyra86778;Parent=Phyra86778;rank=1 scaffold_1279 . exon 5610 6392 . + . ID=Phyra86778.1;Parent=Phyra86778;constitutive=1;rank=1 scaffold_1279 . CDS 6665 7105 . + 0 ID=Phyra86778;Parent=Phyra86778;rank=2 scaffold_1279 . exon 6665 7105 . + . ID=Phyra86778.2;Parent=Phyra86778;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1278 1 7273 scaffold_1278 . repeat_region 1388 2764 . ? . description=dust scaffold_1278 . repeat_region 4809 5594 . ? . description=dust scaffold_1278 ensembl protein_coding_gene 1 1236 . + . ID=Phyra86777;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1278000001;logic_name=jgi_phyra1 scaffold_1278 ensembl transcript 1 1236 . + . ID=Phyra86777;Parent=Phyra86777;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1278 . exon 1 1195 . + . ID=Phyra86777.1;Parent=Phyra86777;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_1278 . CDS 3 1195 . + 0 ID=Phyra86777;Parent=Phyra86777;rank=1 scaffold_1278 . CDS 1221 1236 . + 0 ID=Phyra86777;Parent=Phyra86777;rank=2 scaffold_1278 . exon 1221 1236 . + . ID=Phyra86777.2;Parent=Phyra86777;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1280 1 7297 scaffold_1280 . biological_region 485 488 0.999 - . logic_name=eponine scaffold_1280 . biological_region 5335 5338 0.999 - . logic_name=eponine scaffold_1280 . biological_region 6519 6520 0.999 + . logic_name=eponine scaffold_1280 . biological_region 6832 6835 0.999 + . logic_name=eponine scaffold_1280 ensembl protein_coding_gene 56 3195 . + . ID=Phyra86779;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1280000001;logic_name=jgi_phyra1 scaffold_1280 ensembl transcript 56 3195 . + . ID=Phyra86779;Parent=Phyra86779;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1280 . exon 56 3195 . + . ID=Phyra86779.1;Parent=Phyra86779;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1280 . CDS 58 3195 . + 0 ID=Phyra86779;Parent=Phyra86779;rank=1 scaffold_1280 ensembl protein_coding_gene 3340 4359 . + . ID=Phyra86780;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1280000002;logic_name=jgi_phyra1 scaffold_1280 ensembl transcript 3340 4359 . + . ID=Phyra86780;Parent=Phyra86780;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1280 . CDS 3340 4359 . + 0 ID=Phyra86780;Parent=Phyra86780;rank=1 scaffold_1280 . exon 3340 4359 . + . ID=Phyra86780.1;Parent=Phyra86780;constitutive=1;rank=1 scaffold_1280 ensembl protein_coding_gene 5797 6891 . + . ID=Phyra86781;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1280000003;logic_name=jgi_phyra1 scaffold_1280 ensembl transcript 5797 6891 . + . ID=Phyra86781;Parent=Phyra86781;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1280 . CDS 5797 6245 . + 0 ID=Phyra86781;Parent=Phyra86781;rank=1 scaffold_1280 . exon 5797 6245 . + . ID=Phyra86781.1;Parent=Phyra86781;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1280 . CDS 6329 6411 . + 0 ID=Phyra86781;Parent=Phyra86781;rank=2 scaffold_1280 . exon 6329 6411 . + . ID=Phyra86781.2;Parent=Phyra86781;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1280 . CDS 6443 6891 . + 0 ID=Phyra86781;Parent=Phyra86781;rank=3 scaffold_1280 . exon 6443 6891 . + . ID=Phyra86781.3;Parent=Phyra86781;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1282 1 7297 scaffold_1282 . biological_region 1439 1441 0.999 - . logic_name=eponine scaffold_1282 . biological_region 1946 1946 0.999 - . logic_name=eponine scaffold_1282 . repeat_region 2015 2030 . ? . description=dust scaffold_1282 . repeat_region 2222 3101 . ? . description=dust scaffold_1282 . repeat_region 4542 5014 . ? . description=dust scaffold_1282 . repeat_region 5307 5316 . ? . description=dust scaffold_1282 . repeat_region 5379 5416 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1284 1 7343 scaffold_1284 . repeat_region 1269 1997 . ? . description=dust scaffold_1284 . repeat_region 2131 2232 . ? . description=trf scaffold_1284 . repeat_region 2137 2232 . ? . description=trf scaffold_1284 . repeat_region 2158 2242 . ? . description=trf scaffold_1284 . repeat_region 5014 5375 . ? . description=dust scaffold_1284 ensembl protein_coding_gene 3028 5564 . - . ID=Phyra86782;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1284000001;logic_name=jgi_phyra1 scaffold_1284 ensembl transcript 3028 5564 . - . ID=Phyra86782;Parent=Phyra86782;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1284 . CDS 3028 3110 . - 0 ID=Phyra86782;Parent=Phyra86782;rank=4 scaffold_1284 . exon 3028 3110 . - . ID=Phyra86782.4;Parent=Phyra86782;constitutive=1;ensembl_phase=1;rank=4 scaffold_1284 . CDS 3165 4642 . - 0 ID=Phyra86782;Parent=Phyra86782;rank=3 scaffold_1284 . exon 3165 4642 . - . ID=Phyra86782.3;Parent=Phyra86782;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1284 . CDS 4754 5009 . - 0 ID=Phyra86782;Parent=Phyra86782;rank=2 scaffold_1284 . exon 4754 5009 . - . ID=Phyra86782.2;Parent=Phyra86782;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1284 . CDS 5474 5564 . - 0 ID=Phyra86782;Parent=Phyra86782;rank=1 scaffold_1284 . exon 5474 5564 . - . ID=Phyra86782.1;Parent=Phyra86782;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1276 1 7355 scaffold_1276 . repeat_region 1627 1782 . ? . description=trf scaffold_1276 ensembl protein_coding_gene 2158 3141 . - . ID=Phyra72457;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1276000001;logic_name=jgi_phyra1 scaffold_1276 ensembl transcript 2158 3141 . - . ID=Phyra72457;Parent=Phyra72457;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1276 . CDS 2158 3141 . - 0 ID=Phyra72457;Parent=Phyra72457;rank=1 scaffold_1276 . exon 2158 3141 . - . ID=Phyra72457.1;Parent=Phyra72457;constitutive=1;rank=1 scaffold_1276 ensembl protein_coding_gene 421 1881 . + . ID=Phyra86772;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1276000001;logic_name=jgi_phyra1 scaffold_1276 ensembl transcript 421 1881 . + . ID=Phyra86772;Parent=Phyra86772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1276 . CDS 421 1881 . + 0 ID=Phyra86772;Parent=Phyra86772;rank=1 scaffold_1276 . exon 421 1881 . + . ID=Phyra86772.1;Parent=Phyra86772;constitutive=1;rank=1 scaffold_1276 ensembl protein_coding_gene 4636 5178 . - . ID=Phyra86774;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1276000003;logic_name=jgi_phyra1 scaffold_1276 ensembl transcript 4636 5178 . - . ID=Phyra86774;Parent=Phyra86774;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1276 . CDS 4636 5178 . - 0 ID=Phyra86774;Parent=Phyra86774;rank=1 scaffold_1276 . exon 4636 5178 . - . ID=Phyra86774.1;Parent=Phyra86774;constitutive=1;rank=1 scaffold_1276 ensembl protein_coding_gene 5538 6522 . - . ID=Phyra86775;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1276000004;logic_name=jgi_phyra1 scaffold_1276 ensembl transcript 5538 6522 . - . ID=Phyra86775;Parent=Phyra86775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1276 . CDS 5538 5987 . - 0 ID=Phyra86775;Parent=Phyra86775;rank=2 scaffold_1276 . exon 5538 5987 . - . ID=Phyra86775.2;Parent=Phyra86775;constitutive=1;rank=2 scaffold_1276 . CDS 6010 6522 . - 0 ID=Phyra86775;Parent=Phyra86775;rank=1 scaffold_1276 . exon 6010 6522 . - . ID=Phyra86775.1;Parent=Phyra86775;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_234 1 7401 scaffold_234 . repeat_region 767 809 . ? . description=trf scaffold_234 . repeat_region 1444 2325 . ? . description=dust scaffold_234 . repeat_region 2816 2857 . ? . description=trf scaffold_234 . biological_region 3471 3472 0.999 - . logic_name=eponine scaffold_234 . repeat_region 4198 4240 . ? . description=trf scaffold_234 . repeat_region 4446 5624 . ? . description=dust scaffold_234 . repeat_region 7202 7244 . ? . description=trf scaffold_234 ensembl protein_coding_gene 3055 4104 . + . ID=Phyra72348;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_234000001;logic_name=jgi_phyra1 scaffold_234 ensembl transcript 3055 4104 . + . ID=Phyra72348;Parent=Phyra72348;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_234 . CDS 3055 4104 . + 0 ID=Phyra72348;Parent=Phyra72348;rank=1 scaffold_234 . exon 3055 4104 . + . ID=Phyra72348.1;Parent=Phyra72348;constitutive=1;rank=1 scaffold_234 ensembl protein_coding_gene 6 2521 . - . ID=Phyra85568;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_234000001;logic_name=jgi_phyra1 scaffold_234 ensembl transcript 6 2521 . - . ID=Phyra85568;Parent=Phyra85568;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_234 . CDS 6 524 . - 0 ID=Phyra85568;Parent=Phyra85568;rank=3 scaffold_234 . exon 6 524 . - . ID=Phyra85568.3;Parent=Phyra85568;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_234 . CDS 864 1409 . - 0 ID=Phyra85568;Parent=Phyra85568;rank=2 scaffold_234 . exon 864 1409 . - . ID=Phyra85568.2;Parent=Phyra85568;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_234 . CDS 2352 2521 . - 0 ID=Phyra85568;Parent=Phyra85568;rank=1 scaffold_234 . exon 2352 2521 . - . ID=Phyra85568.1;Parent=Phyra85568;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_234 ensembl protein_coding_gene 5634 7108 . + . ID=Phyra85570;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_234000003;logic_name=jgi_phyra1 scaffold_234 ensembl transcript 5634 7108 . + . ID=Phyra85570;Parent=Phyra85570;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_234 . CDS 5634 6447 . + 0 ID=Phyra85570;Parent=Phyra85570;rank=1 scaffold_234 . exon 5634 6447 . + . ID=Phyra85570.1;Parent=Phyra85570;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_234 . CDS 6525 7108 . + 0 ID=Phyra85570;Parent=Phyra85570;rank=2 scaffold_234 . exon 6525 7108 . + . ID=Phyra85570.2;Parent=Phyra85570;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1242 1 7466 scaffold_1242 . repeat_region 300 343 . ? . description=trf scaffold_1242 . repeat_region 4290 4537 . - . description=GypsyPi-1c_I-int scaffold_1242 . repeat_region 4784 5970 . - . description=GypsyPi-1c_I-int scaffold_1242 . repeat_region 4963 5044 . ? . description=dust scaffold_1242 . biological_region 6568 6569 0.999 + . logic_name=eponine scaffold_1242 . biological_region 6594 6597 0.999 - . logic_name=eponine scaffold_1242 . biological_region 6645 6649 0.999 - . logic_name=eponine scaffold_1242 . biological_region 6702 6702 0.999 + . logic_name=eponine scaffold_1242 ensembl protein_coding_gene 42 3943 . + . ID=Phyra86754;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1242000001;logic_name=jgi_phyra1 scaffold_1242 ensembl transcript 42 3943 . + . ID=Phyra86754;Parent=Phyra86754;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1242 . CDS 42 812 . + 0 ID=Phyra86754;Parent=Phyra86754;rank=1 scaffold_1242 . exon 42 812 . + . ID=Phyra86754.1;Parent=Phyra86754;constitutive=1;rank=1 scaffold_1242 . CDS 1024 1540 . + 0 ID=Phyra86754;Parent=Phyra86754;rank=2 scaffold_1242 . exon 1024 1540 . + . ID=Phyra86754.2;Parent=Phyra86754;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1242 . CDS 1585 2592 . + 0 ID=Phyra86754;Parent=Phyra86754;rank=3 scaffold_1242 . exon 1585 2592 . + . ID=Phyra86754.3;Parent=Phyra86754;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1242 . CDS 2675 3837 . + 0 ID=Phyra86754;Parent=Phyra86754;rank=4 scaffold_1242 . exon 2675 3837 . + . ID=Phyra86754.4;Parent=Phyra86754;constitutive=1;ensembl_phase=1;rank=4 scaffold_1242 . CDS 3863 3943 . + 0 ID=Phyra86754;Parent=Phyra86754;rank=5 scaffold_1242 . exon 3863 3943 . + . ID=Phyra86754.5;Parent=Phyra86754;constitutive=1;rank=5 scaffold_1242 ensembl protein_coding_gene 4658 6254 . - . ID=Phyra86755;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1242000002;logic_name=jgi_phyra1 scaffold_1242 ensembl transcript 4658 6254 . - . ID=Phyra86755;Parent=Phyra86755;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1242 . CDS 4658 4852 . - 0 ID=Phyra86755;Parent=Phyra86755;rank=4 scaffold_1242 . exon 4658 4852 . - . ID=Phyra86755.4;Parent=Phyra86755;constitutive=1;rank=4 scaffold_1242 . CDS 5143 5352 . - 0 ID=Phyra86755;Parent=Phyra86755;rank=3 scaffold_1242 . exon 5143 5352 . - . ID=Phyra86755.3;Parent=Phyra86755;constitutive=1;rank=3 scaffold_1242 . CDS 5395 5975 . - 0 ID=Phyra86755;Parent=Phyra86755;rank=2 scaffold_1242 . exon 5395 5975 . - . ID=Phyra86755.2;Parent=Phyra86755;constitutive=1;ensembl_phase=1;rank=2 scaffold_1242 . CDS 6026 6254 . - 0 ID=Phyra86755;Parent=Phyra86755;rank=1 scaffold_1242 . exon 6026 6254 . - . ID=Phyra86755.1;Parent=Phyra86755;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1277 1 7537 scaffold_1277 . repeat_region 562 2115 . ? . description=dust scaffold_1277 . biological_region 2774 2776 0.999 - . logic_name=eponine scaffold_1277 . biological_region 2780 2782 0.999 - . logic_name=eponine scaffold_1277 . repeat_region 4849 6106 . ? . description=dust scaffold_1277 ensembl protein_coding_gene 259 537 . + . ID=Phyra40851;biotype=protein_coding;external_name=gwEuk.1277.2.1;logic_name=jgi_phyra1 scaffold_1277 ensembl transcript 259 537 . + . ID=Phyra40851;Parent=Phyra40851;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1277 . CDS 259 537 . + 0 ID=Phyra40851;Parent=Phyra40851;rank=1 scaffold_1277 . exon 259 537 . + . ID=Phyra40851.1;Parent=Phyra40851;constitutive=1;rank=1 scaffold_1277 ensembl protein_coding_gene 6353 7525 . + . ID=Phyra86776;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1277000001;logic_name=jgi_phyra1 scaffold_1277 ensembl transcript 6353 7525 . + . ID=Phyra86776;Parent=Phyra86776;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1277 . CDS 6353 7525 . + 0 ID=Phyra86776;Parent=Phyra86776;rank=1 scaffold_1277 . exon 6353 7525 . + . ID=Phyra86776.1;Parent=Phyra86776;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1275 1 7560 scaffold_1275 . repeat_region 1538 1587 . ? . description=dust scaffold_1275 . repeat_region 6052 6060 . ? . description=dust scaffold_1275 . biological_region 6472 6477 0.999 + . logic_name=eponine scaffold_1275 . biological_region 6632 6634 0.999 - . logic_name=eponine scaffold_1275 . biological_region 6640 6646 0.999 - . logic_name=eponine scaffold_1275 . biological_region 6667 6672 0.999 - . logic_name=eponine scaffold_1275 . biological_region 6731 6733 0.999 - . logic_name=eponine scaffold_1275 . biological_region 6940 6940 0.999 + . logic_name=eponine scaffold_1275 . repeat_region 7016 7035 . ? . description=trf scaffold_1275 ensembl protein_coding_gene 686 1915 . + . ID=Phyra86769;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1275000001;logic_name=jgi_phyra1 scaffold_1275 ensembl transcript 686 1915 . + . ID=Phyra86769;Parent=Phyra86769;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1275 . CDS 686 1497 . + 0 ID=Phyra86769;Parent=Phyra86769;rank=1 scaffold_1275 . exon 686 1497 . + . ID=Phyra86769.1;Parent=Phyra86769;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1275 . CDS 1594 1915 . + 0 ID=Phyra86769;Parent=Phyra86769;rank=2 scaffold_1275 . exon 1594 1915 . + . ID=Phyra86769.2;Parent=Phyra86769;constitutive=1;ensembl_phase=2;rank=2 scaffold_1275 ensembl protein_coding_gene 2699 5483 . + . ID=Phyra86770;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1275000002;logic_name=jgi_phyra1 scaffold_1275 ensembl transcript 2699 5483 . + . ID=Phyra86770;Parent=Phyra86770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1275 . CDS 2699 3186 . + 0 ID=Phyra86770;Parent=Phyra86770;rank=1 scaffold_1275 . exon 2699 3186 . + . ID=Phyra86770.1;Parent=Phyra86770;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1275 . CDS 3236 5483 . + 0 ID=Phyra86770;Parent=Phyra86770;rank=2 scaffold_1275 . exon 3236 5483 . + . ID=Phyra86770.2;Parent=Phyra86770;constitutive=1;ensembl_phase=2;rank=2 scaffold_1275 ensembl protein_coding_gene 6480 7520 . + . ID=Phyra86771;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1275000003;logic_name=jgi_phyra1 scaffold_1275 ensembl transcript 6480 7520 . + . ID=Phyra86771;Parent=Phyra86771;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1275 . CDS 6480 6600 . + 0 ID=Phyra86771;Parent=Phyra86771;rank=1 scaffold_1275 . exon 6480 6600 . + . ID=Phyra86771.1;Parent=Phyra86771;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1275 . CDS 6718 7520 . + 0 ID=Phyra86771;Parent=Phyra86771;rank=2 scaffold_1275 . exon 6718 7520 . + . ID=Phyra86771.2;Parent=Phyra86771;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1272 1 7595 scaffold_1272 . biological_region 3789 3793 0.999 - . logic_name=eponine scaffold_1272 . biological_region 7050 7051 0.999 - . logic_name=eponine scaffold_1272 . biological_region 7088 7092 0.999 + . logic_name=eponine scaffold_1272 ensembl protein_coding_gene 2781 4436 . - . ID=Phyra86764;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1272000001;logic_name=jgi_phyra1 scaffold_1272 ensembl transcript 2781 4436 . - . ID=Phyra86764;Parent=Phyra86764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1272 . CDS 2781 4436 . - 0 ID=Phyra86764;Parent=Phyra86764;rank=1 scaffold_1272 . exon 2781 4436 . - . ID=Phyra86764.1;Parent=Phyra86764;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1274 1 7637 scaffold_1274 . repeat_region 3595 3620 . ? . description=trf scaffold_1274 . repeat_region 3595 3630 . ? . description=dust scaffold_1274 . repeat_region 6241 6407 . ? . description=dust scaffold_1274 . biological_region 6826 6828 0.999 - . logic_name=eponine scaffold_1274 . repeat_region 7588 7637 . ? . description=dust scaffold_1274 . repeat_region 7593 7637 . ? . description=trf scaffold_1274 ensembl protein_coding_gene 37 3335 . - . ID=Phyra86768;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1274000001;logic_name=jgi_phyra1 scaffold_1274 ensembl transcript 37 3335 . - . ID=Phyra86768;Parent=Phyra86768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1274 . CDS 37 3335 . - 0 ID=Phyra86768;Parent=Phyra86768;rank=1 scaffold_1274 . exon 37 3335 . - . ID=Phyra86768.1;Parent=Phyra86768;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1267 1 7669 scaffold_1267 . repeat_region 1368 1377 . ? . description=dust scaffold_1267 . repeat_region 1692 1700 . ? . description=dust scaffold_1267 . repeat_region 1983 3013 . ? . description=dust scaffold_1267 . repeat_region 4879 4899 . ? . description=dust scaffold_1267 . repeat_region 6446 6574 . - . description=GypsyPi-1c_LTR scaffold_1267 ensembl protein_coding_gene 365 1000 . + . ID=Phyra86762;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1267000001;logic_name=jgi_phyra1 scaffold_1267 ensembl transcript 365 1000 . + . ID=Phyra86762;Parent=Phyra86762;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1267 . CDS 365 1000 . + 0 ID=Phyra86762;Parent=Phyra86762;rank=1 scaffold_1267 . exon 365 1000 . + . ID=Phyra86762.1;Parent=Phyra86762;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1273 1 7682 scaffold_1273 . repeat_region 809 850 . ? . description=trf scaffold_1273 . repeat_region 1025 1033 . ? . description=dust scaffold_1273 . repeat_region 1232 1281 . ? . description=dust scaffold_1273 . biological_region 3084 3086 0.999 + . logic_name=eponine scaffold_1273 . biological_region 3115 3115 0.999 + . logic_name=eponine scaffold_1273 . biological_region 3197 3198 0.999 - . logic_name=eponine scaffold_1273 . repeat_region 3702 3746 . ? . description=trf scaffold_1273 . repeat_region 4766 5096 . ? . description=dust scaffold_1273 . repeat_region 6437 6486 . ? . description=dust scaffold_1273 ensembl tRNA_gene 5710 5782 . + . ID=EPrPRAG00000000206;biotype=tRNA;description=tRNA-Val for anticodon UAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_1273 ensembl transcript 5710 5782 . + . ID=EPrPRAT00000000206;Parent=EPrPRAG00000000206;biotype=tRNA;logic_name=ncrna_eg scaffold_1273 . exon 5710 5782 . + . ID=EPrPRAE00000000206;Parent=EPrPRAT00000000206;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1273 ensembl protein_coding_gene 2680 3276 . - . ID=Phyra86765;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1273000001;logic_name=jgi_phyra1 scaffold_1273 ensembl transcript 2680 3276 . - . ID=Phyra86765;Parent=Phyra86765;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1273 . CDS 2680 3276 . - 0 ID=Phyra86765;Parent=Phyra86765;rank=1 scaffold_1273 . exon 2680 3276 . - . ID=Phyra86765.1;Parent=Phyra86765;constitutive=1;rank=1 scaffold_1273 ensembl protein_coding_gene 4317 4717 . + . ID=Phyra86766;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1273000002;logic_name=jgi_phyra1 scaffold_1273 ensembl transcript 4317 4717 . + . ID=Phyra86766;Parent=Phyra86766;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1273 . CDS 4317 4653 . + 0 ID=Phyra86766;Parent=Phyra86766;rank=1 scaffold_1273 . exon 4317 4653 . + . ID=Phyra86766.1;Parent=Phyra86766;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1273 . CDS 4707 4717 . + 0 ID=Phyra86766;Parent=Phyra86766;rank=2 scaffold_1273 . exon 4707 4717 . + . ID=Phyra86766.2;Parent=Phyra86766;constitutive=1;ensembl_phase=1;rank=2 scaffold_1273 ensembl protein_coding_gene 6562 6969 . + . ID=Phyra86767;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1273000003;logic_name=jgi_phyra1 scaffold_1273 ensembl transcript 6562 6969 . + . ID=Phyra86767;Parent=Phyra86767;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1273 . CDS 6562 6969 . + 0 ID=Phyra86767;Parent=Phyra86767;rank=1 scaffold_1273 . exon 6562 6969 . + . ID=Phyra86767.1;Parent=Phyra86767;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1255 1 7727 scaffold_1255 . repeat_region 605 616 . ? . description=dust scaffold_1255 . repeat_region 1694 6792 . ? . description=dust scaffold_1255 . biological_region 7007 7009 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1253 1 7729 scaffold_1253 . repeat_region 812 6438 . ? . description=dust scaffold_1253 ensembl protein_coding_gene 6550 7726 . + . ID=Phyra86758;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1253000001;logic_name=jgi_phyra1 scaffold_1253 ensembl transcript 6550 7726 . + . ID=Phyra86758;Parent=Phyra86758;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1253 . CDS 6550 6612 . + 0 ID=Phyra86758;Parent=Phyra86758;rank=1 scaffold_1253 . exon 6550 6612 . + . ID=Phyra86758.1;Parent=Phyra86758;constitutive=1;rank=1 scaffold_1253 . CDS 6665 7726 . + 0 ID=Phyra86758;Parent=Phyra86758;rank=2 scaffold_1253 . exon 6665 7726 . + . ID=Phyra86758.2;Parent=Phyra86758;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1265 1 7737 scaffold_1265 . biological_region 1448 1453 0.999 + . logic_name=eponine scaffold_1265 . biological_region 1712 1715 0.999 - . logic_name=eponine scaffold_1265 . repeat_region 3331 3380 . ? . description=dust scaffold_1265 ensembl protein_coding_gene 105 545 . - . ID=Phyra86759;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1265000001;logic_name=jgi_phyra1 scaffold_1265 ensembl transcript 105 545 . - . ID=Phyra86759;Parent=Phyra86759;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1265 . CDS 105 193 . - 0 ID=Phyra86759;Parent=Phyra86759;rank=3 scaffold_1265 . exon 105 193 . - . ID=Phyra86759.3;Parent=Phyra86759;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1265 . CDS 251 381 . - 0 ID=Phyra86759;Parent=Phyra86759;rank=2 scaffold_1265 . exon 251 381 . - . ID=Phyra86759.2;Parent=Phyra86759;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1265 . CDS 459 545 . - 0 ID=Phyra86759;Parent=Phyra86759;rank=1 scaffold_1265 . exon 459 545 . - . ID=Phyra86759.1;Parent=Phyra86759;constitutive=1;rank=1 scaffold_1265 ensembl protein_coding_gene 1407 6549 . + . ID=Phyra86760;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1265000002;logic_name=jgi_phyra1 scaffold_1265 ensembl transcript 1407 6549 . + . ID=Phyra86760;Parent=Phyra86760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1265 . CDS 1407 3178 . + 0 ID=Phyra86760;Parent=Phyra86760;rank=1 scaffold_1265 . exon 1407 3178 . + . ID=Phyra86760.1;Parent=Phyra86760;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1265 . CDS 3418 4102 . + 0 ID=Phyra86760;Parent=Phyra86760;rank=2 scaffold_1265 . exon 3418 4102 . + . ID=Phyra86760.2;Parent=Phyra86760;constitutive=1;ensembl_phase=2;rank=2 scaffold_1265 . CDS 4242 5209 . + 0 ID=Phyra86760;Parent=Phyra86760;rank=3 scaffold_1265 . exon 4242 5209 . + . ID=Phyra86760.3;Parent=Phyra86760;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1265 . CDS 5439 6549 . + 0 ID=Phyra86760;Parent=Phyra86760;rank=4 scaffold_1265 . exon 5439 6549 . + . ID=Phyra86760.4;Parent=Phyra86760;constitutive=1;ensembl_phase=2;rank=4 scaffold_1265 ensembl protein_coding_gene 6959 7680 . - . ID=Phyra86761;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1265000003;logic_name=jgi_phyra1 scaffold_1265 ensembl transcript 6959 7680 . - . ID=Phyra86761;Parent=Phyra86761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1265 . CDS 6959 7678 . - 0 ID=Phyra86761;Parent=Phyra86761;rank=1 scaffold_1265 . exon 6959 7680 . - . ID=Phyra86761.1;Parent=Phyra86761;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1247 1 7745 scaffold_1247 . repeat_region 1689 3169 . ? . description=dust scaffold_1247 . repeat_region 4709 7038 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1251 1 7768 scaffold_1251 . repeat_region 1658 6933 . ? . description=dust scaffold_1251 ensembl protein_coding_gene 4 1386 . - . ID=Phyra86757;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1251000001;logic_name=jgi_phyra1 scaffold_1251 ensembl transcript 4 1386 . - . ID=Phyra86757;Parent=Phyra86757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1251 . CDS 4 1386 . - 0 ID=Phyra86757;Parent=Phyra86757;rank=1 scaffold_1251 . exon 4 1386 . - . ID=Phyra86757.1;Parent=Phyra86757;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1241 1 7780 scaffold_1241 . repeat_region 166 174 . ? . description=dust scaffold_1241 . repeat_region 1007 6416 . ? . description=dust scaffold_1241 . repeat_region 7295 7337 . ? . description=trf scaffold_1241 ensembl protein_coding_gene 7338 7771 . - . ID=Phyra72456;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1241000001;logic_name=jgi_phyra1 scaffold_1241 ensembl transcript 7338 7771 . - . ID=Phyra72456;Parent=Phyra72456;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1241 . CDS 7338 7387 . - 0 ID=Phyra72456;Parent=Phyra72456;rank=2 scaffold_1241 . exon 7338 7387 . - . ID=Phyra72456.2;Parent=Phyra72456;constitutive=1;ensembl_phase=1;rank=2 scaffold_1241 . CDS 7459 7771 . - 0 ID=Phyra72456;Parent=Phyra72456;rank=1 scaffold_1241 . exon 7459 7771 . - . ID=Phyra72456.1;Parent=Phyra72456;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1089 1 7782 scaffold_1089 . biological_region 1563 1565 0.999 + . logic_name=eponine scaffold_1089 . biological_region 2482 2484 0.999 - . logic_name=eponine scaffold_1089 . biological_region 2583 2585 0.999 - . logic_name=eponine scaffold_1089 . repeat_region 3802 6635 . ? . description=dust scaffold_1089 ensembl protein_coding_gene 427 3124 . - . ID=Phyra86705;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1089000001;logic_name=jgi_phyra1 scaffold_1089 ensembl transcript 427 3124 . - . ID=Phyra86705;Parent=Phyra86705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1089 . CDS 427 429 . - 0 ID=Phyra86705;Parent=Phyra86705;rank=3 scaffold_1089 . exon 427 429 . - . ID=Phyra86705.3;Parent=Phyra86705;constitutive=1;rank=3 scaffold_1089 . CDS 510 2815 . - 0 ID=Phyra86705;Parent=Phyra86705;rank=2 scaffold_1089 . exon 510 2815 . - . ID=Phyra86705.2;Parent=Phyra86705;constitutive=1;ensembl_phase=1;rank=2 scaffold_1089 . CDS 2866 3124 . - 0 ID=Phyra86705;Parent=Phyra86705;rank=1 scaffold_1089 . exon 2866 3124 . - . ID=Phyra86705.1;Parent=Phyra86705;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1089 ensembl protein_coding_gene 6711 7733 . + . ID=Phyra86706;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1089000002;logic_name=jgi_phyra1 scaffold_1089 ensembl transcript 6711 7733 . + . ID=Phyra86706;Parent=Phyra86706;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1089 . CDS 6711 7733 . + 0 ID=Phyra86706;Parent=Phyra86706;rank=1 scaffold_1089 . exon 6711 7733 . + . ID=Phyra86706.1;Parent=Phyra86706;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1239 1 7785 scaffold_1239 . repeat_region 95 103 . ? . description=dust scaffold_1239 . repeat_region 846 4282 . ? . description=dust scaffold_1239 . repeat_region 4285 4637 . + . description=GypsyPi-1c_I-int scaffold_1239 . repeat_region 4678 5137 . + . description=GypsyPi-1c_I-int scaffold_1239 . repeat_region 5283 6714 . ? . description=dust scaffold_1239 . biological_region 7099 7101 0.999 + . logic_name=eponine scaffold_1239 . biological_region 7135 7139 0.999 - . logic_name=eponine scaffold_1239 . biological_region 7189 7194 0.999 + . logic_name=eponine scaffold_1239 . biological_region 7697 7699 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1136 1 7787 scaffold_1136 . repeat_region 55 4489 . - . description=GypsyPi-1c_I-int scaffold_1136 . biological_region 725 728 0.999 - . logic_name=eponine scaffold_1136 . biological_region 1679 1679 0.999 - . logic_name=eponine scaffold_1136 . biological_region 1733 1736 0.999 + . logic_name=eponine scaffold_1136 . repeat_region 4490 4799 . - . description=GypsyPi-1c_LTR scaffold_1136 . biological_region 6317 6321 0.999 + . logic_name=eponine scaffold_1136 ensembl protein_coding_gene 211 4402 . - . ID=Phyra86727;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1136000001;logic_name=jgi_phyra1 scaffold_1136 ensembl transcript 211 4402 . - . ID=Phyra86727;Parent=Phyra86727;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1136 . CDS 211 1114 . - 0 ID=Phyra86727;Parent=Phyra86727;rank=4 scaffold_1136 . exon 211 1114 . - . ID=Phyra86727.4;Parent=Phyra86727;constitutive=1;ensembl_phase=2;rank=4 scaffold_1136 . CDS 1204 3106 . - 0 ID=Phyra86727;Parent=Phyra86727;rank=3 scaffold_1136 . exon 1204 3106 . - . ID=Phyra86727.3;Parent=Phyra86727;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1136 . CDS 3572 4223 . - 0 ID=Phyra86727;Parent=Phyra86727;rank=2 scaffold_1136 . exon 3572 4223 . - . ID=Phyra86727.2;Parent=Phyra86727;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1136 . CDS 4274 4402 . - 0 ID=Phyra86727;Parent=Phyra86727;rank=1 scaffold_1136 . exon 4274 4402 . - . ID=Phyra86727.1;Parent=Phyra86727;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1237 1 7788 scaffold_1237 . repeat_region 273 315 . ? . description=trf scaffold_1237 . repeat_region 414 460 . ? . description=trf scaffold_1237 . repeat_region 609 746 . ? . description=trf scaffold_1237 . repeat_region 1909 2699 . ? . description=dust scaffold_1237 . repeat_region 4608 6876 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1231 1 7809 scaffold_1231 . repeat_region 2652 2676 . ? . description=trf scaffold_1231 . repeat_region 2652 2676 . ? . description=dust scaffold_1231 . repeat_region 3003 3012 . ? . description=dust scaffold_1231 . biological_region 3903 3909 0.999 - . logic_name=eponine scaffold_1231 . repeat_region 7396 7447 . ? . description=dust scaffold_1231 . biological_region 7423 7423 0.999 - . logic_name=eponine scaffold_1231 . repeat_region 7482 7533 . ? . description=trf scaffold_1231 . repeat_region 7580 7631 . ? . description=dust scaffold_1231 ensembl protein_coding_gene 5491 5769 . - . ID=Phyra40716;biotype=protein_coding;external_name=gwEuk.1231.10.1;logic_name=jgi_phyra1 scaffold_1231 ensembl transcript 5491 5769 . - . ID=Phyra40716;Parent=Phyra40716;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1231 . CDS 5491 5769 . - 0 ID=Phyra40716;Parent=Phyra40716;rank=1 scaffold_1231 . exon 5491 5769 . - . ID=Phyra40716.1;Parent=Phyra40716;constitutive=1;rank=1 scaffold_1231 ensembl protein_coding_gene 3584 4969 . + . ID=Phyra72455;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1231000001;logic_name=jgi_phyra1 scaffold_1231 ensembl transcript 3584 4969 . + . ID=Phyra72455;Parent=Phyra72455;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1231 . CDS 3584 3736 . + 0 ID=Phyra72455;Parent=Phyra72455;rank=1 scaffold_1231 . exon 3584 3736 . + . ID=Phyra72455.1;Parent=Phyra72455;constitutive=1;rank=1 scaffold_1231 . CDS 3758 4969 . + 0 ID=Phyra72455;Parent=Phyra72455;rank=2 scaffold_1231 . exon 3758 4969 . + . ID=Phyra72455.2;Parent=Phyra72455;constitutive=1;rank=2 scaffold_1231 ensembl protein_coding_gene 6364 7658 . + . ID=Phyra86750;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1231000002;logic_name=jgi_phyra1 scaffold_1231 ensembl transcript 6364 7658 . + . ID=Phyra86750;Parent=Phyra86750;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1231 . CDS 6364 6388 . + 0 ID=Phyra86750;Parent=Phyra86750;rank=1 scaffold_1231 . exon 6364 6388 . + . ID=Phyra86750.1;Parent=Phyra86750;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1231 . CDS 6506 6624 . + 0 ID=Phyra86750;Parent=Phyra86750;rank=2 scaffold_1231 . exon 6506 6624 . + . ID=Phyra86750.2;Parent=Phyra86750;constitutive=1;ensembl_phase=1;rank=2 scaffold_1231 . CDS 6693 7067 . + 0 ID=Phyra86750;Parent=Phyra86750;rank=3 scaffold_1231 . exon 6693 7067 . + . ID=Phyra86750.3;Parent=Phyra86750;constitutive=1;rank=3 scaffold_1231 . CDS 7142 7394 . + 0 ID=Phyra86750;Parent=Phyra86750;rank=4 scaffold_1231 . exon 7142 7394 . + . ID=Phyra86750.4;Parent=Phyra86750;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1231 . CDS 7645 7658 . + 0 ID=Phyra86750;Parent=Phyra86750;rank=5 scaffold_1231 . exon 7645 7658 . + . ID=Phyra86750.5;Parent=Phyra86750;constitutive=1;ensembl_phase=1;rank=5 ##gff-version 3 ##sequence-region scaffold_1233 1 7814 scaffold_1233 . repeat_region 188 197 . ? . description=dust scaffold_1233 . repeat_region 1893 2105 . ? . description=dust scaffold_1233 . biological_region 2147 2148 0.999 + . logic_name=eponine scaffold_1233 . biological_region 4398 4401 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1221 1 7817 scaffold_1221 . biological_region 75 77 0.999 - . logic_name=eponine scaffold_1221 . repeat_region 932 3476 . ? . description=dust scaffold_1221 . repeat_region 5250 5262 . ? . description=dust scaffold_1221 . repeat_region 5561 5863 . ? . description=dust scaffold_1221 . repeat_region 5927 5962 . ? . description=trf scaffold_1221 . biological_region 6083 6084 0.999 - . logic_name=eponine scaffold_1221 . repeat_region 6377 6387 . ? . description=dust scaffold_1221 . biological_region 6630 6630 0.999 + . logic_name=eponine scaffold_1221 . repeat_region 7783 7816 . ? . description=trf scaffold_1221 ensembl protein_coding_gene 7065 7813 . + . ID=Phyra86748;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1221000001;logic_name=jgi_phyra1 scaffold_1221 ensembl transcript 7065 7813 . + . ID=Phyra86748;Parent=Phyra86748;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1221 . CDS 7065 7330 . + 0 ID=Phyra86748;Parent=Phyra86748;rank=1 scaffold_1221 . exon 7065 7330 . + . ID=Phyra86748.1;Parent=Phyra86748;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1221 . CDS 7636 7813 . + 0 ID=Phyra86748;Parent=Phyra86748;rank=2 scaffold_1221 . exon 7636 7813 . + . ID=Phyra86748.2;Parent=Phyra86748;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1224 1 7818 scaffold_1224 . repeat_region 1403 6984 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1234 1 7828 scaffold_1234 . repeat_region 6000 6007 . ? . description=dust scaffold_1234 ensembl protein_coding_gene 2094 2762 . - . ID=Phyra86751;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1234000001;logic_name=jgi_phyra1 scaffold_1234 ensembl transcript 2094 2762 . - . ID=Phyra86751;Parent=Phyra86751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1234 . CDS 2094 2116 . - 0 ID=Phyra86751;Parent=Phyra86751;rank=3 scaffold_1234 . exon 2094 2116 . - . ID=Phyra86751.3;Parent=Phyra86751;constitutive=1;ensembl_phase=1;rank=3 scaffold_1234 . CDS 2238 2396 . - 0 ID=Phyra86751;Parent=Phyra86751;rank=2 scaffold_1234 . exon 2238 2396 . - . ID=Phyra86751.2;Parent=Phyra86751;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1234 . CDS 2453 2762 . - 0 ID=Phyra86751;Parent=Phyra86751;rank=1 scaffold_1234 . exon 2453 2762 . - . ID=Phyra86751.1;Parent=Phyra86751;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1234 ensembl protein_coding_gene 4195 5097 . - . ID=Phyra86752;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1234000002;logic_name=jgi_phyra1 scaffold_1234 ensembl transcript 4195 5097 . - . ID=Phyra86752;Parent=Phyra86752;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1234 . CDS 4195 5097 . - 0 ID=Phyra86752;Parent=Phyra86752;rank=1 scaffold_1234 . exon 4195 5097 . - . ID=Phyra86752.1;Parent=Phyra86752;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1219 1 7830 scaffold_1219 . repeat_region 260 279 . ? . description=trf scaffold_1219 . repeat_region 1533 6964 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1215 1 7837 scaffold_1215 . repeat_region 1843 2818 . ? . description=dust scaffold_1215 . repeat_region 4279 6830 . ? . description=dust scaffold_1215 ensembl protein_coding_gene 1 255 . + . ID=Phyra40640;biotype=protein_coding;external_name=gwEuk.1215.1.1;logic_name=jgi_phyra1 scaffold_1215 ensembl transcript 1 255 . + . ID=Phyra40640;Parent=Phyra40640;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1215 . CDS 1 255 . + 0 ID=Phyra40640;Parent=Phyra40640;rank=1 scaffold_1215 . exon 1 255 . + . ID=Phyra40640.1;Parent=Phyra40640;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1203 1 7861 scaffold_1203 . repeat_region 1279 6899 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1192 1 7868 scaffold_1192 . repeat_region 1254 2278 . ? . description=dust scaffold_1192 . repeat_region 3516 6469 . ? . description=dust scaffold_1192 . repeat_region 6481 6488 . ? . description=dust scaffold_1192 ensembl protein_coding_gene 143 505 . + . ID=Phyra40371;biotype=protein_coding;external_name=gwEuk.1192.1.1;logic_name=jgi_phyra1 scaffold_1192 ensembl transcript 143 505 . + . ID=Phyra40371;Parent=Phyra40371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1192 . CDS 143 505 . + 0 ID=Phyra40371;Parent=Phyra40371;rank=1 scaffold_1192 . exon 143 505 . + . ID=Phyra40371.1;Parent=Phyra40371;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1199 1 7868 scaffold_1199 . repeat_region 1029 6743 . ? . description=dust scaffold_1199 . repeat_region 7086 7115 . ? . description=trf scaffold_1199 ensembl protein_coding_gene 7316 7814 . + . ID=Phyra86745;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1199000001;logic_name=jgi_phyra1 scaffold_1199 ensembl transcript 7316 7814 . + . ID=Phyra86745;Parent=Phyra86745;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1199 . CDS 7316 7814 . + 0 ID=Phyra86745;Parent=Phyra86745;rank=1 scaffold_1199 . exon 7316 7814 . + . ID=Phyra86745.1;Parent=Phyra86745;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1195 1 7872 scaffold_1195 . biological_region 302 306 0.999 - . logic_name=eponine scaffold_1195 . repeat_region 905 6507 . ? . description=dust scaffold_1195 . repeat_region 7461 7500 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1220 1 7872 scaffold_1220 . repeat_region 103 159 . ? . description=trf scaffold_1220 . biological_region 875 880 0.999 + . logic_name=eponine scaffold_1220 . repeat_region 1462 6630 . ? . description=dust scaffold_1220 ensembl protein_coding_gene 244 1293 . - . ID=Phyra72454;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1220000001;logic_name=jgi_phyra1 scaffold_1220 ensembl transcript 244 1293 . - . ID=Phyra72454;Parent=Phyra72454;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1220 . CDS 244 1293 . - 0 ID=Phyra72454;Parent=Phyra72454;rank=1 scaffold_1220 . exon 244 1293 . - . ID=Phyra72454.1;Parent=Phyra72454;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1197 1 7873 scaffold_1197 . repeat_region 875 6124 . ? . description=dust scaffold_1197 . repeat_region 7555 7579 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1190 1 7874 scaffold_1190 . repeat_region 1002 6769 . ? . description=dust scaffold_1190 . repeat_region 6771 7806 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1189 1 7875 scaffold_1189 . repeat_region 125 144 . ? . description=trf scaffold_1189 . repeat_region 324 360 . ? . description=trf scaffold_1189 . repeat_region 346 389 . ? . description=trf scaffold_1189 . biological_region 596 599 0.999 - . logic_name=eponine scaffold_1189 . repeat_region 1238 7023 . ? . description=dust scaffold_1189 ensembl protein_coding_gene 175 965 . + . ID=Phyra86744;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1189000001;logic_name=jgi_phyra1 scaffold_1189 ensembl transcript 175 965 . + . ID=Phyra86744;Parent=Phyra86744;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1189 . CDS 175 884 . + 0 ID=Phyra86744;Parent=Phyra86744;rank=1 scaffold_1189 . exon 175 884 . + . ID=Phyra86744.1;Parent=Phyra86744;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1189 . CDS 956 965 . + 0 ID=Phyra86744;Parent=Phyra86744;rank=2 scaffold_1189 . exon 956 965 . + . ID=Phyra86744.2;Parent=Phyra86744;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1218 1 7881 scaffold_1218 . repeat_region 1003 6688 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1181 1 7886 scaffold_1181 . repeat_region 973 6609 . ? . description=dust scaffold_1181 ensembl protein_coding_gene 216 607 . + . ID=Phyra86741;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1181000001;logic_name=jgi_phyra1 scaffold_1181 ensembl transcript 216 607 . + . ID=Phyra86741;Parent=Phyra86741;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1181 . exon 216 607 . + . ID=Phyra86741.1;Parent=Phyra86741;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1181 . CDS 218 607 . + 0 ID=Phyra86741;Parent=Phyra86741;rank=1 ##gff-version 3 ##sequence-region scaffold_1178 1 7889 scaffold_1178 . biological_region 688 693 0.999 - . logic_name=eponine scaffold_1178 . repeat_region 1187 6817 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1179 1 7890 scaffold_1179 . biological_region 385 389 0.999 + . logic_name=eponine scaffold_1179 . repeat_region 574 614 . ? . description=trf scaffold_1179 . repeat_region 924 6733 . ? . description=dust scaffold_1179 ensembl protein_coding_gene 36 7882 . + . ID=Phyra86740;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1179000001;logic_name=jgi_phyra1 scaffold_1179 ensembl transcript 36 7882 . + . ID=Phyra86740;Parent=Phyra86740;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1179 . CDS 36 864 . + 0 ID=Phyra86740;Parent=Phyra86740;rank=1 scaffold_1179 . exon 36 864 . + . ID=Phyra86740.1;Parent=Phyra86740;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1179 . CDS 6768 7882 . + 0 ID=Phyra86740;Parent=Phyra86740;rank=2 scaffold_1179 . exon 6768 7882 . + . ID=Phyra86740.2;Parent=Phyra86740;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1177 1 7892 scaffold_1177 . repeat_region 857 4127 . ? . description=dust scaffold_1177 . repeat_region 5153 6418 . ? . description=dust scaffold_1177 ensembl protein_coding_gene 6 680 . - . ID=Phyra86738;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1177000001;logic_name=jgi_phyra1 scaffold_1177 ensembl transcript 6 680 . - . ID=Phyra86738;Parent=Phyra86738;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1177 . CDS 6 680 . - 0 ID=Phyra86738;Parent=Phyra86738;rank=1 scaffold_1177 . exon 6 680 . - . ID=Phyra86738.1;Parent=Phyra86738;constitutive=1;rank=1 scaffold_1177 ensembl protein_coding_gene 4337 4829 . - . ID=Phyra86739;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1177000002;logic_name=jgi_phyra1 scaffold_1177 ensembl transcript 4337 4829 . - . ID=Phyra86739;Parent=Phyra86739;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1177 . CDS 4337 4352 . - 0 ID=Phyra86739;Parent=Phyra86739;rank=2 scaffold_1177 . exon 4337 4352 . - . ID=Phyra86739.2;Parent=Phyra86739;constitutive=1;ensembl_phase=2;rank=2 scaffold_1177 . CDS 4372 4829 . - 0 ID=Phyra86739;Parent=Phyra86739;rank=1 scaffold_1177 . exon 4372 4829 . - . ID=Phyra86739.1;Parent=Phyra86739;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1271 1 7892 scaffold_1271 . repeat_region 1451 1499 . ? . description=trf scaffold_1271 . repeat_region 1588 2266 . ? . description=dust scaffold_1271 ensembl protein_coding_gene 4171 4997 . - . ID=Phyra86763;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1271000001;logic_name=jgi_phyra1 scaffold_1271 ensembl transcript 4171 4997 . - . ID=Phyra86763;Parent=Phyra86763;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1271 . CDS 4171 4650 . - 0 ID=Phyra86763;Parent=Phyra86763;rank=2 scaffold_1271 . exon 4171 4650 . - . ID=Phyra86763.2;Parent=Phyra86763;constitutive=1;rank=2 scaffold_1271 . CDS 4947 4997 . - 0 ID=Phyra86763;Parent=Phyra86763;rank=1 scaffold_1271 . exon 4947 4997 . - . ID=Phyra86763.1;Parent=Phyra86763;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1176 1 7893 scaffold_1176 . repeat_region 1454 7087 . ? . description=dust scaffold_1176 ensembl protein_coding_gene 7521 7826 . + . ID=Phyra40294;biotype=protein_coding;external_name=gwEuk.1176.1.1;logic_name=jgi_phyra1 scaffold_1176 ensembl transcript 7521 7826 . + . ID=Phyra40294;Parent=Phyra40294;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1176 . CDS 7521 7826 . + 0 ID=Phyra40294;Parent=Phyra40294;rank=1 scaffold_1176 . exon 7521 7826 . + . ID=Phyra40294.1;Parent=Phyra40294;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1173 1 7896 scaffold_1173 . repeat_region 992 6606 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1169 1 7898 scaffold_1169 . repeat_region 2126 6316 . ? . description=dust scaffold_1169 . biological_region 7349 7350 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1165 1 7904 scaffold_1165 . biological_region 356 356 0.999 + . logic_name=eponine scaffold_1165 . biological_region 1121 1124 0.999 + . logic_name=eponine scaffold_1165 . biological_region 1396 1398 0.999 - . logic_name=eponine scaffold_1165 . repeat_region 3469 3610 . ? . description=trf scaffold_1165 . repeat_region 3873 7212 . ? . description=dust scaffold_1165 ensembl protein_coding_gene 48 1793 . - . ID=Phyra86736;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1165000001;logic_name=jgi_phyra1 scaffold_1165 ensembl transcript 48 1793 . - . ID=Phyra86736;Parent=Phyra86736;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1165 . CDS 48 872 . - 0 ID=Phyra86736;Parent=Phyra86736;rank=3 scaffold_1165 . exon 48 872 . - . ID=Phyra86736.3;Parent=Phyra86736;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1165 . CDS 1073 1658 . - 0 ID=Phyra86736;Parent=Phyra86736;rank=2 scaffold_1165 . exon 1073 1658 . - . ID=Phyra86736.2;Parent=Phyra86736;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1165 . CDS 1731 1793 . - 0 ID=Phyra86736;Parent=Phyra86736;rank=1 scaffold_1165 . exon 1731 1793 . - . ID=Phyra86736.1;Parent=Phyra86736;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1248 1 7909 scaffold_1248 . biological_region 97 98 0.999 + . logic_name=eponine scaffold_1248 . repeat_region 1003 1041 . ? . description=trf scaffold_1248 . repeat_region 1303 2640 . ? . description=dust scaffold_1248 . repeat_region 4305 4318 . ? . description=dust scaffold_1248 . repeat_region 4434 6905 . ? . description=dust scaffold_1248 . repeat_region 6924 7909 . + . description=GypsyPi-1c_I-int scaffold_1248 ensembl protein_coding_gene 6906 7280 . + . ID=Phyra40756;biotype=protein_coding;external_name=gwEuk.1248.1.1;logic_name=jgi_phyra1 scaffold_1248 ensembl transcript 6906 7280 . + . ID=Phyra40756;Parent=Phyra40756;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1248 . CDS 6906 7280 . + 0 ID=Phyra40756;Parent=Phyra40756;rank=1 scaffold_1248 . exon 6906 7280 . + . ID=Phyra40756.1;Parent=Phyra40756;constitutive=1;rank=1 scaffold_1248 ensembl protein_coding_gene 2673 3452 . - . ID=Phyra86756;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1248000001;logic_name=jgi_phyra1 scaffold_1248 ensembl transcript 2673 3452 . - . ID=Phyra86756;Parent=Phyra86756;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1248 . CDS 2673 2851 . - 0 ID=Phyra86756;Parent=Phyra86756;rank=3 scaffold_1248 . exon 2673 2851 . - . ID=Phyra86756.3;Parent=Phyra86756;constitutive=1;ensembl_phase=1;rank=3 scaffold_1248 . CDS 3098 3294 . - 0 ID=Phyra86756;Parent=Phyra86756;rank=2 scaffold_1248 . exon 3098 3294 . - . ID=Phyra86756.2;Parent=Phyra86756;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1248 . CDS 3379 3452 . - 0 ID=Phyra86756;Parent=Phyra86756;rank=1 scaffold_1248 . exon 3379 3452 . - . ID=Phyra86756.1;Parent=Phyra86756;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1163 1 7910 scaffold_1163 . repeat_region 8 521 . + . description=GypsyPi-1c_I-int scaffold_1163 . repeat_region 974 6872 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1164 1 7910 scaffold_1164 . repeat_region 1003 6739 . ? . description=dust scaffold_1164 . biological_region 6976 6980 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1155 1 7912 scaffold_1155 . repeat_region 1112 1869 . ? . description=dust scaffold_1155 . repeat_region 2674 2685 . ? . description=dust scaffold_1155 . repeat_region 2731 2767 . ? . description=trf scaffold_1155 . repeat_region 3599 4622 . ? . description=dust scaffold_1155 . biological_region 5257 5259 0.999 - . logic_name=eponine scaffold_1155 . biological_region 5441 5443 0.999 - . logic_name=eponine scaffold_1155 . repeat_region 5620 6852 . ? . description=dust scaffold_1155 . repeat_region 7019 7731 . - . description=GypsyPi-1c_I-int scaffold_1155 ensembl protein_coding_gene 7099 7344 . - . ID=Phyra40218;biotype=protein_coding;external_name=gwEuk.1155.1.1;logic_name=jgi_phyra1 scaffold_1155 ensembl transcript 7099 7344 . - . ID=Phyra40218;Parent=Phyra40218;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1155 . CDS 7099 7344 . - 0 ID=Phyra40218;Parent=Phyra40218;rank=1 scaffold_1155 . exon 7099 7344 . - . ID=Phyra40218.1;Parent=Phyra40218;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1160 1 7919 scaffold_1160 . repeat_region 1203 6976 . ? . description=dust scaffold_1160 . biological_region 7571 7573 0.999 - . logic_name=eponine scaffold_1160 . biological_region 7612 7614 0.999 + . logic_name=eponine scaffold_1160 ensembl protein_coding_gene 7051 7845 . - . ID=Phyra86734;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1160000001;logic_name=jgi_phyra1 scaffold_1160 ensembl transcript 7051 7845 . - . ID=Phyra86734;Parent=Phyra86734;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1160 . CDS 7051 7845 . - 0 ID=Phyra86734;Parent=Phyra86734;rank=1 scaffold_1160 . exon 7051 7845 . - . ID=Phyra86734.1;Parent=Phyra86734;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1153 1 7921 scaffold_1153 . repeat_region 823 6724 . ? . description=dust scaffold_1153 ensembl pseudogene 7290 7919 . + . ID=Phyra40214;biotype=pseudogene;external_name=gwEuk.1153.7.1;logic_name=jgi_phyra1 scaffold_1153 ensembl pseudogene 7290 7919 . + . ID=Phyra40214;Parent=Phyra40214;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1153 . exon 7290 7919 . + . ID=Phyra40214.1;Parent=Phyra40214;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1152 1 7925 scaffold_1152 . repeat_region 1030 6678 . ? . description=dust scaffold_1152 . repeat_region 7080 7122 . ? . description=trf scaffold_1152 . biological_region 7240 7245 0.999 + . logic_name=eponine scaffold_1152 ensembl pseudogene 7609 7920 . + . ID=Phyra40200;biotype=pseudogene;external_name=gwEuk.1152.3.1;logic_name=jgi_phyra1 scaffold_1152 ensembl pseudogene 7609 7920 . + . ID=Phyra40200;Parent=Phyra40200;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1152 . exon 7609 7733 . + . ID=Phyra40200.1;Parent=Phyra40200;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1152 . exon 7810 7920 . + . ID=Phyra40200.2;Parent=Phyra40200;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1152 ensembl protein_coding_gene 55 698 . - . ID=Phyra86729;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1152000001;logic_name=jgi_phyra1 scaffold_1152 ensembl transcript 55 698 . - . ID=Phyra86729;Parent=Phyra86729;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1152 . CDS 55 698 . - 0 ID=Phyra86729;Parent=Phyra86729;rank=1 scaffold_1152 . exon 55 698 . - . ID=Phyra86729.1;Parent=Phyra86729;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1161 1 7926 scaffold_1161 . repeat_region 838 6681 . ? . description=dust scaffold_1161 . biological_region 6997 7001 0.999 - . logic_name=eponine scaffold_1161 . repeat_region 7188 7206 . ? . description=dust scaffold_1161 ensembl protein_coding_gene 716 7229 . - . ID=Phyra86735;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1161000001;logic_name=jgi_phyra1 scaffold_1161 ensembl transcript 716 7229 . - . ID=Phyra86735;Parent=Phyra86735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1161 . CDS 716 752 . - 0 ID=Phyra86735;Parent=Phyra86735;rank=2 scaffold_1161 . exon 716 752 . - . ID=Phyra86735.2;Parent=Phyra86735;constitutive=1;ensembl_phase=2;rank=2 scaffold_1161 . CDS 6724 7229 . - 0 ID=Phyra86735;Parent=Phyra86735;rank=1 scaffold_1161 . exon 6724 7229 . - . ID=Phyra86735.1;Parent=Phyra86735;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1151 1 7927 scaffold_1151 . repeat_region 1319 7125 . ? . description=dust scaffold_1151 . repeat_region 7618 7639 . ? . description=trf scaffold_1151 ensembl protein_coding_gene 7177 7452 . + . ID=Phyra40197;biotype=protein_coding;external_name=gwEuk.1151.1.1;logic_name=jgi_phyra1 scaffold_1151 ensembl transcript 7177 7452 . + . ID=Phyra40197;Parent=Phyra40197;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1151 . CDS 7177 7452 . + 0 ID=Phyra40197;Parent=Phyra40197;rank=1 scaffold_1151 . exon 7177 7452 . + . ID=Phyra40197.1;Parent=Phyra40197;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1154 1 7928 scaffold_1154 . biological_region 3736 3740 0.999 - . logic_name=eponine scaffold_1154 . biological_region 7208 7209 0.999 - . logic_name=eponine scaffold_1154 ensembl protein_coding_gene 50 1825 . - . ID=Phyra86730;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1154000001;logic_name=jgi_phyra1 scaffold_1154 ensembl transcript 50 1825 . - . ID=Phyra86730;Parent=Phyra86730;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1154 . CDS 50 1306 . - 0 ID=Phyra86730;Parent=Phyra86730;rank=2 scaffold_1154 . exon 50 1306 . - . ID=Phyra86730.2;Parent=Phyra86730;constitutive=1;rank=2 scaffold_1154 . CDS 1574 1825 . - 0 ID=Phyra86730;Parent=Phyra86730;rank=1 scaffold_1154 . exon 1574 1825 . - . ID=Phyra86730.1;Parent=Phyra86730;constitutive=1;rank=1 scaffold_1154 ensembl protein_coding_gene 3118 4313 . + . ID=Phyra86731;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1154000002;logic_name=jgi_phyra1 scaffold_1154 ensembl transcript 3118 4313 . + . ID=Phyra86731;Parent=Phyra86731;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1154 . CDS 3118 3223 . + 0 ID=Phyra86731;Parent=Phyra86731;rank=1 scaffold_1154 . exon 3118 3223 . + . ID=Phyra86731.1;Parent=Phyra86731;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1154 . CDS 3319 3432 . + 0 ID=Phyra86731;Parent=Phyra86731;rank=2 scaffold_1154 . exon 3319 3432 . + . ID=Phyra86731.2;Parent=Phyra86731;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1154 . CDS 3502 4313 . + 0 ID=Phyra86731;Parent=Phyra86731;rank=3 scaffold_1154 . exon 3502 4313 . + . ID=Phyra86731.3;Parent=Phyra86731;constitutive=1;ensembl_phase=1;rank=3 scaffold_1154 ensembl protein_coding_gene 4933 5997 . + . ID=Phyra86732;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1154000003;logic_name=jgi_phyra1 scaffold_1154 ensembl transcript 4933 5997 . + . ID=Phyra86732;Parent=Phyra86732;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1154 . CDS 4933 5997 . + 0 ID=Phyra86732;Parent=Phyra86732;rank=1 scaffold_1154 . exon 4933 5997 . + . ID=Phyra86732.1;Parent=Phyra86732;constitutive=1;rank=1 scaffold_1154 ensembl protein_coding_gene 6749 7816 . + . ID=Phyra86733;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1154000004;logic_name=jgi_phyra1 scaffold_1154 ensembl transcript 6749 7816 . + . ID=Phyra86733;Parent=Phyra86733;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1154 . CDS 6749 7816 . + 0 ID=Phyra86733;Parent=Phyra86733;rank=1 scaffold_1154 . exon 6749 7816 . + . ID=Phyra86733.1;Parent=Phyra86733;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1149 1 7929 scaffold_1149 . repeat_region 932 6653 . ? . description=dust scaffold_1149 . repeat_region 7346 7379 . ? . description=dust scaffold_1149 . repeat_region 7358 7379 . ? . description=trf scaffold_1149 . repeat_region 7704 7725 . ? . description=trf scaffold_1149 ensembl protein_coding_gene 6718 6931 . + . ID=Phyra40181;biotype=protein_coding;external_name=gwEuk.1149.1.1;logic_name=jgi_phyra1 scaffold_1149 ensembl transcript 6718 6931 . + . ID=Phyra40181;Parent=Phyra40181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1149 . CDS 6718 6931 . + 0 ID=Phyra40181;Parent=Phyra40181;rank=1 scaffold_1149 . exon 6718 6931 . + . ID=Phyra40181.1;Parent=Phyra40181;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1147 1 7931 scaffold_1147 . repeat_region 387 434 . ? . description=dust scaffold_1147 . repeat_region 397 434 . ? . description=trf scaffold_1147 . repeat_region 1258 6757 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1145 1 7939 scaffold_1145 . repeat_region 308 366 . ? . description=trf scaffold_1145 . repeat_region 1195 6916 . ? . description=dust scaffold_1145 . repeat_region 7062 7078 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_955 1 7942 scaffold_955 . repeat_region 1003 4445 . ? . description=dust scaffold_955 ensembl protein_coding_gene 6884 7927 . - . ID=Phyra86639;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_955000001;logic_name=jgi_phyra1 scaffold_955 ensembl transcript 6884 7927 . - . ID=Phyra86639;Parent=Phyra86639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_955 . CDS 6884 7927 . - 0 ID=Phyra86639;Parent=Phyra86639;rank=1 scaffold_955 . exon 6884 7927 . - . ID=Phyra86639.1;Parent=Phyra86639;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1141 1 7943 scaffold_1141 . repeat_region 803 6705 . ? . description=dust scaffold_1141 . repeat_region 7087 7139 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1142 1 7943 scaffold_1142 . repeat_region 893 6820 . ? . description=dust scaffold_1142 ensembl protein_coding_gene 197 807 . + . ID=Phyra86728;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1142000001;logic_name=jgi_phyra1 scaffold_1142 ensembl transcript 197 807 . + . ID=Phyra86728;Parent=Phyra86728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1142 . exon 197 405 . + . ID=Phyra86728.1;Parent=Phyra86728;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1142 . CDS 199 405 . + 0 ID=Phyra86728;Parent=Phyra86728;rank=1 scaffold_1142 . CDS 508 571 . + 0 ID=Phyra86728;Parent=Phyra86728;rank=2 scaffold_1142 . exon 508 571 . + . ID=Phyra86728.2;Parent=Phyra86728;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1142 . CDS 628 742 . + 0 ID=Phyra86728;Parent=Phyra86728;rank=3 scaffold_1142 . exon 628 742 . + . ID=Phyra86728.3;Parent=Phyra86728;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1142 . CDS 774 807 . + 0 ID=Phyra86728;Parent=Phyra86728;rank=4 scaffold_1142 . exon 774 807 . + . ID=Phyra86728.4;Parent=Phyra86728;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_1143 1 7943 scaffold_1143 . repeat_region 62 229 . ? . description=trf scaffold_1143 . repeat_region 252 364 . + . description=Polinton-1_PI scaffold_1143 . repeat_region 431 450 . ? . description=trf scaffold_1143 . repeat_region 467 521 . ? . description=trf scaffold_1143 . repeat_region 523 1610 . + . description=Polinton-1_PI scaffold_1143 . repeat_region 1616 7147 . ? . description=dust scaffold_1143 . repeat_region 7151 7675 . + . description=Polinton-1_PI scaffold_1143 . repeat_region 7392 7399 . ? . description=dust scaffold_1143 . repeat_region 7623 7631 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1140 1 7947 scaffold_1140 . biological_region 425 427 0.999 + . logic_name=eponine scaffold_1140 . biological_region 437 442 0.999 - . logic_name=eponine scaffold_1140 . biological_region 452 455 0.999 + . logic_name=eponine scaffold_1140 . biological_region 487 495 0.999 - . logic_name=eponine scaffold_1140 . biological_region 510 522 0.999 - . logic_name=eponine scaffold_1140 . biological_region 538 539 0.999 - . logic_name=eponine scaffold_1140 . biological_region 562 562 0.999 - . logic_name=eponine scaffold_1140 . biological_region 679 680 0.999 + . logic_name=eponine scaffold_1140 . biological_region 711 713 0.999 - . logic_name=eponine scaffold_1140 . biological_region 727 733 0.999 - . logic_name=eponine scaffold_1140 . repeat_region 834 6752 . ? . description=dust scaffold_1140 ensembl protein_coding_gene 6754 7571 . + . ID=Phyra40180;biotype=protein_coding;external_name=gwEuk.1140.1.1;logic_name=jgi_phyra1 scaffold_1140 ensembl transcript 6754 7571 . + . ID=Phyra40180;Parent=Phyra40180;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1140 . CDS 6754 6783 . + 0 ID=Phyra40180;Parent=Phyra40180;rank=1 scaffold_1140 . exon 6754 6783 . + . ID=Phyra40180.1;Parent=Phyra40180;constitutive=1;rank=1 scaffold_1140 . CDS 6844 6915 . + 0 ID=Phyra40180;Parent=Phyra40180;rank=2 scaffold_1140 . exon 6844 6915 . + . ID=Phyra40180.2;Parent=Phyra40180;constitutive=1;rank=2 scaffold_1140 . CDS 6984 7082 . + 0 ID=Phyra40180;Parent=Phyra40180;rank=3 scaffold_1140 . exon 6984 7082 . + . ID=Phyra40180.3;Parent=Phyra40180;constitutive=1;rank=3 scaffold_1140 . CDS 7156 7262 . + 0 ID=Phyra40180;Parent=Phyra40180;rank=4 scaffold_1140 . exon 7156 7262 . + . ID=Phyra40180.4;Parent=Phyra40180;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1140 . CDS 7329 7420 . + 0 ID=Phyra40180;Parent=Phyra40180;rank=5 scaffold_1140 . exon 7329 7420 . + . ID=Phyra40180.5;Parent=Phyra40180;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_1140 . CDS 7498 7571 . + 0 ID=Phyra40180;Parent=Phyra40180;rank=6 scaffold_1140 . exon 7498 7571 . + . ID=Phyra40180.6;Parent=Phyra40180;constitutive=1;ensembl_phase=1;rank=6 ##gff-version 3 ##sequence-region scaffold_1130 1 7952 scaffold_1130 . biological_region 1248 1250 0.999 + . logic_name=eponine scaffold_1130 . biological_region 1518 1521 0.999 - . logic_name=eponine scaffold_1130 . biological_region 1655 1657 0.999 + . logic_name=eponine scaffold_1130 . repeat_region 2723 2746 . ? . description=trf scaffold_1130 . biological_region 3213 3214 0.999 + . logic_name=eponine scaffold_1130 . repeat_region 3362 3418 . ? . description=dust scaffold_1130 . repeat_region 3365 3418 . ? . description=trf scaffold_1130 ensembl protein_coding_gene 674 1574 . - . ID=Phyra86722;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1130000001;logic_name=jgi_phyra1 scaffold_1130 ensembl transcript 674 1574 . - . ID=Phyra86722;Parent=Phyra86722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1130 . CDS 674 831 . - 0 ID=Phyra86722;Parent=Phyra86722;rank=2 scaffold_1130 . exon 674 831 . - . ID=Phyra86722.2;Parent=Phyra86722;constitutive=1;ensembl_phase=1;rank=2 scaffold_1130 . CDS 896 1574 . - 0 ID=Phyra86722;Parent=Phyra86722;rank=1 scaffold_1130 . exon 896 1574 . - . ID=Phyra86722.1;Parent=Phyra86722;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1130 ensembl protein_coding_gene 1897 4832 . + . ID=Phyra86723;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1130000002;logic_name=jgi_phyra1 scaffold_1130 ensembl transcript 1897 4832 . + . ID=Phyra86723;Parent=Phyra86723;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1130 . CDS 1897 2218 . + 0 ID=Phyra86723;Parent=Phyra86723;rank=1 scaffold_1130 . exon 1897 2218 . + . ID=Phyra86723.1;Parent=Phyra86723;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1130 . CDS 2286 2499 . + 0 ID=Phyra86723;Parent=Phyra86723;rank=2 scaffold_1130 . exon 2286 2499 . + . ID=Phyra86723.2;Parent=Phyra86723;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1130 . CDS 2545 2671 . + 0 ID=Phyra86723;Parent=Phyra86723;rank=3 scaffold_1130 . exon 2545 2671 . + . ID=Phyra86723.3;Parent=Phyra86723;constitutive=1;ensembl_phase=2;rank=3 scaffold_1130 . CDS 2751 2819 . + 0 ID=Phyra86723;Parent=Phyra86723;rank=4 scaffold_1130 . exon 2751 2819 . + . ID=Phyra86723.4;Parent=Phyra86723;constitutive=1;rank=4 scaffold_1130 . CDS 2900 3027 . + 0 ID=Phyra86723;Parent=Phyra86723;rank=5 scaffold_1130 . exon 2900 3027 . + . ID=Phyra86723.5;Parent=Phyra86723;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_1130 . CDS 3357 3506 . + 0 ID=Phyra86723;Parent=Phyra86723;rank=6 scaffold_1130 . exon 3357 3506 . + . ID=Phyra86723.6;Parent=Phyra86723;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_1130 . CDS 3533 3797 . + 0 ID=Phyra86723;Parent=Phyra86723;rank=7 scaffold_1130 . exon 3533 3797 . + . ID=Phyra86723.7;Parent=Phyra86723;constitutive=1;ensembl_phase=2;rank=7 scaffold_1130 . CDS 3891 4832 . + 0 ID=Phyra86723;Parent=Phyra86723;rank=8 scaffold_1130 . exon 3891 4832 . + . ID=Phyra86723.8;Parent=Phyra86723;constitutive=1;rank=8 scaffold_1130 ensembl protein_coding_gene 5658 6046 . - . ID=Phyra86724;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1130000003;logic_name=jgi_phyra1 scaffold_1130 ensembl transcript 5658 6046 . - . ID=Phyra86724;Parent=Phyra86724;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1130 . CDS 5658 5945 . - 0 ID=Phyra86724;Parent=Phyra86724;rank=2 scaffold_1130 . exon 5658 5945 . - . ID=Phyra86724.2;Parent=Phyra86724;constitutive=1;rank=2 scaffold_1130 . CDS 6011 6046 . - 0 ID=Phyra86724;Parent=Phyra86724;rank=1 scaffold_1130 . exon 6011 6046 . - . ID=Phyra86724.1;Parent=Phyra86724;constitutive=1;rank=1 scaffold_1130 ensembl protein_coding_gene 6427 7860 . + . ID=Phyra86725;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1130000004;logic_name=jgi_phyra1 scaffold_1130 ensembl transcript 6427 7860 . + . ID=Phyra86725;Parent=Phyra86725;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1130 . CDS 6427 7860 . + 0 ID=Phyra86725;Parent=Phyra86725;rank=1 scaffold_1130 . exon 6427 7860 . + . ID=Phyra86725.1;Parent=Phyra86725;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1137 1 7953 scaffold_1137 . repeat_region 767 774 . ? . description=dust scaffold_1137 . repeat_region 1101 6915 . ? . description=dust scaffold_1137 ensembl protein_coding_gene 107 1096 . - . ID=Phyra40070;biotype=protein_coding;external_name=gwEuk.1137.3.1;logic_name=jgi_phyra1 scaffold_1137 ensembl transcript 107 1096 . - . ID=Phyra40070;Parent=Phyra40070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1137 . CDS 107 197 . - 0 ID=Phyra40070;Parent=Phyra40070;rank=7 scaffold_1137 . exon 107 197 . - . ID=Phyra40070.7;Parent=Phyra40070;constitutive=1;ensembl_phase=2;rank=7 scaffold_1137 . CDS 264 313 . - 0 ID=Phyra40070;Parent=Phyra40070;rank=6 scaffold_1137 . exon 264 313 . - . ID=Phyra40070.6;Parent=Phyra40070;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_1137 . CDS 383 427 . - 0 ID=Phyra40070;Parent=Phyra40070;rank=5 scaffold_1137 . exon 383 427 . - . ID=Phyra40070.5;Parent=Phyra40070;constitutive=1;rank=5 scaffold_1137 . CDS 507 595 . - 0 ID=Phyra40070;Parent=Phyra40070;rank=4 scaffold_1137 . exon 507 595 . - . ID=Phyra40070.4;Parent=Phyra40070;constitutive=1;ensembl_phase=1;rank=4 scaffold_1137 . CDS 664 729 . - 0 ID=Phyra40070;Parent=Phyra40070;rank=3 scaffold_1137 . exon 664 729 . - . ID=Phyra40070.3;Parent=Phyra40070;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1137 . CDS 793 883 . - 0 ID=Phyra40070;Parent=Phyra40070;rank=2 scaffold_1137 . exon 793 883 . - . ID=Phyra40070.2;Parent=Phyra40070;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1137 . CDS 953 1096 . - 0 ID=Phyra40070;Parent=Phyra40070;rank=1 scaffold_1137 . exon 953 1096 . - . ID=Phyra40070.1;Parent=Phyra40070;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1132 1 7960 scaffold_1132 . repeat_region 1173 6006 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1133 1 7960 scaffold_1133 . biological_region 473 476 0.999 + . logic_name=eponine scaffold_1133 . biological_region 566 567 0.999 - . logic_name=eponine scaffold_1133 . biological_region 658 660 0.999 + . logic_name=eponine scaffold_1133 . repeat_region 1013 6803 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1129 1 7963 scaffold_1129 . repeat_region 889 6725 . ? . description=dust scaffold_1129 . repeat_region 7312 7324 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1124 1 7967 scaffold_1124 . repeat_region 1 1212 . + . description=Polinton-1_PI scaffold_1124 . repeat_region 1251 6896 . ? . description=dust scaffold_1124 . repeat_region 6898 6953 . + . description=Polinton-1_PI scaffold_1124 . repeat_region 7114 7464 . + . description=Polinton-1_PI scaffold_1124 . repeat_region 7745 7963 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1123 1 7968 scaffold_1123 . repeat_region 401 408 . ? . description=dust scaffold_1123 . repeat_region 1597 7011 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1121 1 7969 scaffold_1121 . repeat_region 917 6808 . ? . description=dust scaffold_1121 . biological_region 7085 7088 0.999 + . logic_name=eponine scaffold_1121 . biological_region 7242 7245 0.999 + . logic_name=eponine scaffold_1121 . biological_region 7337 7342 0.999 - . logic_name=eponine scaffold_1121 . biological_region 7469 7470 0.999 - . logic_name=eponine scaffold_1121 . biological_region 7580 7581 0.999 + . logic_name=eponine scaffold_1121 . biological_region 7631 7635 0.999 - . logic_name=eponine scaffold_1121 . biological_region 7691 7691 0.999 - . logic_name=eponine scaffold_1121 . biological_region 7724 7728 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1117 1 7970 scaffold_1117 . repeat_region 1092 6942 . ? . description=dust scaffold_1117 ensembl protein_coding_gene 7160 7879 . + . ID=Phyra39975;biotype=protein_coding;external_name=gwEuk.1117.1.1;logic_name=jgi_phyra1 scaffold_1117 ensembl transcript 7160 7879 . + . ID=Phyra39975;Parent=Phyra39975;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1117 . CDS 7160 7289 . + 0 ID=Phyra39975;Parent=Phyra39975;rank=1 scaffold_1117 . exon 7160 7289 . + . ID=Phyra39975.1;Parent=Phyra39975;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1117 . CDS 7359 7879 . + 0 ID=Phyra39975;Parent=Phyra39975;rank=2 scaffold_1117 . exon 7359 7879 . + . ID=Phyra39975.2;Parent=Phyra39975;constitutive=1;ensembl_phase=1;rank=2 scaffold_1117 ensembl protein_coding_gene 26 1075 . + . ID=Phyra72451;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1117000001;logic_name=jgi_phyra1 scaffold_1117 ensembl transcript 26 1075 . + . ID=Phyra72451;Parent=Phyra72451;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1117 . CDS 26 1075 . + 0 ID=Phyra72451;Parent=Phyra72451;rank=1 scaffold_1117 . exon 26 1075 . + . ID=Phyra72451.1;Parent=Phyra72451;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1116 1 7972 scaffold_1116 . repeat_region 1211 6646 . ? . description=dust scaffold_1116 . repeat_region 7196 7206 . ? . description=dust scaffold_1116 . repeat_region 7219 7276 . ? . description=dust scaffold_1116 ensembl protein_coding_gene 7295 7972 . + . ID=Phyra39974;biotype=protein_coding;external_name=gwEuk.1116.5.1;logic_name=jgi_phyra1 scaffold_1116 ensembl transcript 7295 7972 . + . ID=Phyra39974;Parent=Phyra39974;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1116 . CDS 7295 7972 . + 0 ID=Phyra39974;Parent=Phyra39974;rank=1 scaffold_1116 . exon 7295 7972 . + . ID=Phyra39974.1;Parent=Phyra39974;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1113 1 7979 scaffold_1113 . repeat_region 1124 7055 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1111 1 7980 scaffold_1111 . biological_region 280 283 0.999 - . logic_name=eponine scaffold_1111 . biological_region 881 883 0.999 + . logic_name=eponine scaffold_1111 . biological_region 1594 1597 0.999 + . logic_name=eponine scaffold_1111 . repeat_region 1677 7185 . ? . description=dust scaffold_1111 ensembl protein_coding_gene 42 1482 . + . ID=Phyra86718;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1111000001;logic_name=jgi_phyra1 scaffold_1111 ensembl transcript 42 1482 . + . ID=Phyra86718;Parent=Phyra86718;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1111 . CDS 42 1442 . + 0 ID=Phyra86718;Parent=Phyra86718;rank=1 scaffold_1111 . exon 42 1442 . + . ID=Phyra86718.1;Parent=Phyra86718;constitutive=1;rank=1 scaffold_1111 . CDS 1471 1482 . + 0 ID=Phyra86718;Parent=Phyra86718;rank=2 scaffold_1111 . exon 1471 1482 . + . ID=Phyra86718.2;Parent=Phyra86718;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1135 1 7980 scaffold_1135 . biological_region 234 236 0.999 - . logic_name=eponine scaffold_1135 . biological_region 327 328 0.999 + . logic_name=eponine scaffold_1135 . biological_region 418 421 0.999 - . logic_name=eponine scaffold_1135 . repeat_region 1110 1123 . ? . description=dust scaffold_1135 . repeat_region 1253 7146 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1106 1 7983 scaffold_1106 . repeat_region 1092 6825 . ? . description=dust scaffold_1106 ensembl protein_coding_gene 22 147 . - . ID=Phyra39938;biotype=protein_coding;external_name=gwEuk.1106.1.1;logic_name=jgi_phyra1 scaffold_1106 ensembl transcript 22 147 . - . ID=Phyra39938;Parent=Phyra39938;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1106 . CDS 22 147 . - 0 ID=Phyra39938;Parent=Phyra39938;rank=1 scaffold_1106 . exon 22 147 . - . ID=Phyra39938.1;Parent=Phyra39938;constitutive=1;rank=1 scaffold_1106 ensembl protein_coding_gene 571 996 . - . ID=Phyra39940;biotype=protein_coding;external_name=gwEuk.1106.3.1;logic_name=jgi_phyra1 scaffold_1106 ensembl transcript 571 996 . - . ID=Phyra39940;Parent=Phyra39940;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1106 . CDS 571 996 . - 0 ID=Phyra39940;Parent=Phyra39940;rank=1 scaffold_1106 . exon 571 996 . - . ID=Phyra39940.1;Parent=Phyra39940;constitutive=1;rank=1 scaffold_1106 ensembl protein_coding_gene 6983 7756 . + . ID=Phyra86716;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1106000002;logic_name=jgi_phyra1 scaffold_1106 ensembl transcript 6983 7756 . + . ID=Phyra86716;Parent=Phyra86716;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1106 . CDS 6983 7756 . + 0 ID=Phyra86716;Parent=Phyra86716;rank=1 scaffold_1106 . exon 6983 7756 . + . ID=Phyra86716.1;Parent=Phyra86716;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1109 1 7983 scaffold_1109 . repeat_region 803 6733 . ? . description=dust scaffold_1109 ensembl protein_coding_gene 6890 7965 . - . ID=Phyra86717;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1109000001;logic_name=jgi_phyra1 scaffold_1109 ensembl transcript 6890 7965 . - . ID=Phyra86717;Parent=Phyra86717;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1109 . CDS 6890 6918 . - 0 ID=Phyra86717;Parent=Phyra86717;rank=2 scaffold_1109 . exon 6890 6918 . - . ID=Phyra86717.2;Parent=Phyra86717;constitutive=1;ensembl_phase=1;rank=2 scaffold_1109 . CDS 6939 7965 . - 0 ID=Phyra86717;Parent=Phyra86717;rank=1 scaffold_1109 . exon 6939 7965 . - . ID=Phyra86717.1;Parent=Phyra86717;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1108 1 7984 scaffold_1108 . repeat_region 801 6663 . ? . description=dust scaffold_1108 . repeat_region 7208 7512 . - . description=GypsyPi-1c_LTR scaffold_1108 . repeat_region 7711 7768 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1104 1 7986 scaffold_1104 . repeat_region 1070 7051 . ? . description=dust scaffold_1104 . repeat_region 7702 7727 . ? . description=trf scaffold_1104 . biological_region 7907 7911 0.999 - . logic_name=eponine scaffold_1104 ensembl protein_coding_gene 36 906 . - . ID=Phyra86714;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1104000001;logic_name=jgi_phyra1 scaffold_1104 ensembl transcript 36 906 . - . ID=Phyra86714;Parent=Phyra86714;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1104 . CDS 36 906 . - 0 ID=Phyra86714;Parent=Phyra86714;rank=1 scaffold_1104 . exon 36 906 . - . ID=Phyra86714.1;Parent=Phyra86714;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1101 1 7988 scaffold_1101 . repeat_region 1355 6970 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1102 1 7988 scaffold_1102 . biological_region 751 753 0.999 - . logic_name=eponine scaffold_1102 . repeat_region 871 6656 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1103 1 7988 scaffold_1103 . biological_region 732 736 0.999 + . logic_name=eponine scaffold_1103 . biological_region 762 764 0.999 + . logic_name=eponine scaffold_1103 . repeat_region 1183 6698 . ? . description=dust scaffold_1103 . repeat_region 6766 6940 . ? . description=trf scaffold_1103 . repeat_region 6836 6899 . ? . description=trf scaffold_1103 . repeat_region 6851 6981 . ? . description=trf scaffold_1103 . repeat_region 6904 6954 . ? . description=trf scaffold_1103 . biological_region 7158 7160 0.999 - . logic_name=eponine scaffold_1103 . biological_region 7176 7180 0.999 - . logic_name=eponine scaffold_1103 . biological_region 7318 7320 0.999 - . logic_name=eponine scaffold_1103 . biological_region 7526 7526 0.999 - . logic_name=eponine scaffold_1103 . biological_region 7580 7584 0.999 + . logic_name=eponine scaffold_1103 . biological_region 7726 7733 0.999 - . logic_name=eponine scaffold_1103 . repeat_region 7751 7762 . ? . description=dust scaffold_1103 ensembl protein_coding_gene 6 865 . - . ID=Phyra86713;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1103000001;logic_name=jgi_phyra1 scaffold_1103 ensembl transcript 6 865 . - . ID=Phyra86713;Parent=Phyra86713;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1103 . CDS 6 277 . - 0 ID=Phyra86713;Parent=Phyra86713;rank=4 scaffold_1103 . exon 6 277 . - . ID=Phyra86713.4;Parent=Phyra86713;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1103 . CDS 320 340 . - 0 ID=Phyra86713;Parent=Phyra86713;rank=3 scaffold_1103 . exon 320 340 . - . ID=Phyra86713.3;Parent=Phyra86713;constitutive=1;rank=3 scaffold_1103 . CDS 427 597 . - 0 ID=Phyra86713;Parent=Phyra86713;rank=2 scaffold_1103 . exon 427 597 . - . ID=Phyra86713.2;Parent=Phyra86713;constitutive=1;rank=2 scaffold_1103 . CDS 671 865 . - 0 ID=Phyra86713;Parent=Phyra86713;rank=1 scaffold_1103 . exon 671 865 . - . ID=Phyra86713.1;Parent=Phyra86713;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1100 1 7989 scaffold_1100 . repeat_region 1004 4257 . ? . description=dust scaffold_1100 . repeat_region 4316 4363 . ? . description=dust scaffold_1100 . repeat_region 4319 4346 . ? . description=trf scaffold_1100 . biological_region 4458 4459 0.999 - . logic_name=eponine scaffold_1100 . biological_region 4735 4737 0.999 - . logic_name=eponine scaffold_1100 . biological_region 5335 5338 0.999 + . logic_name=eponine scaffold_1100 . repeat_region 5761 6618 . ? . description=dust scaffold_1100 ensembl protein_coding_gene 66 647 . + . ID=Phyra86711;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1100000001;logic_name=jgi_phyra1 scaffold_1100 ensembl transcript 66 647 . + . ID=Phyra86711;Parent=Phyra86711;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1100 . CDS 66 647 . + 0 ID=Phyra86711;Parent=Phyra86711;rank=1 scaffold_1100 . exon 66 647 . + . ID=Phyra86711.1;Parent=Phyra86711;constitutive=1;rank=1 scaffold_1100 ensembl protein_coding_gene 4346 5495 . + . ID=Phyra86712;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1100000002;logic_name=jgi_phyra1 scaffold_1100 ensembl transcript 4346 5495 . + . ID=Phyra86712;Parent=Phyra86712;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1100 . CDS 4346 5450 . + 0 ID=Phyra86712;Parent=Phyra86712;rank=1 scaffold_1100 . exon 4346 5450 . + . ID=Phyra86712.1;Parent=Phyra86712;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1100 . CDS 5479 5495 . + 0 ID=Phyra86712;Parent=Phyra86712;rank=2 scaffold_1100 . exon 5479 5495 . + . ID=Phyra86712.2;Parent=Phyra86712;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1096 1 7993 scaffold_1096 . repeat_region 967 6856 . ? . description=dust scaffold_1096 ensembl protein_coding_gene 6948 7103 . - . ID=Phyra39549;biotype=protein_coding;external_name=gwEuk.1096.2.1;logic_name=jgi_phyra1 scaffold_1096 ensembl transcript 6948 7103 . - . ID=Phyra39549;Parent=Phyra39549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1096 . CDS 6948 7103 . - 0 ID=Phyra39549;Parent=Phyra39549;rank=1 scaffold_1096 . exon 6948 7103 . - . ID=Phyra39549.1;Parent=Phyra39549;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1099 1 7993 scaffold_1099 . repeat_region 927 3005 . ? . description=dust scaffold_1099 . repeat_region 3893 3904 . ? . description=dust scaffold_1099 . repeat_region 6012 6908 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1098 1 7996 scaffold_1098 . repeat_region 1441 7058 . ? . description=dust scaffold_1098 . repeat_region 7558 7621 . ? . description=trf scaffold_1098 . repeat_region 7720 7766 . ? . description=trf scaffold_1098 ensembl protein_coding_gene 7064 7432 . + . ID=Phyra39552;biotype=protein_coding;external_name=gwEuk.1098.3.1;logic_name=jgi_phyra1 scaffold_1098 ensembl transcript 7064 7432 . + . ID=Phyra39552;Parent=Phyra39552;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1098 . CDS 7064 7432 . + 0 ID=Phyra39552;Parent=Phyra39552;rank=1 scaffold_1098 . exon 7064 7432 . + . ID=Phyra39552.1;Parent=Phyra39552;constitutive=1;rank=1 scaffold_1098 ensembl protein_coding_gene 979 1353 . + . ID=Phyra86709;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1098000001;logic_name=jgi_phyra1 scaffold_1098 ensembl transcript 979 1353 . + . ID=Phyra86709;Parent=Phyra86709;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1098 . CDS 979 1353 . + 0 ID=Phyra86709;Parent=Phyra86709;rank=1 scaffold_1098 . exon 979 1353 . + . ID=Phyra86709.1;Parent=Phyra86709;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1126 1 7996 scaffold_1126 . repeat_region 1576 7069 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1097 1 7997 scaffold_1097 . repeat_region 923 6750 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1094 1 8000 scaffold_1094 . repeat_region 566 583 . ? . description=dust scaffold_1094 . repeat_region 654 4715 . ? . description=dust scaffold_1094 . biological_region 4929 4933 0.999 - . logic_name=eponine scaffold_1094 . repeat_region 5624 6843 . ? . description=dust scaffold_1094 . repeat_region 6849 7525 . - . description=GypsyPi-1c_I-int scaffold_1094 . repeat_region 7526 7831 . - . description=GypsyPi-1c_LTR ##gff-version 3 ##sequence-region scaffold_1093 1 8001 scaffold_1093 . biological_region 206 212 0.999 - . logic_name=eponine scaffold_1093 . repeat_region 243 251 . ? . description=dust scaffold_1093 . repeat_region 896 6819 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1202 1 8001 scaffold_1202 . biological_region 565 570 0.999 + . logic_name=eponine scaffold_1202 . repeat_region 930 6708 . ? . description=dust scaffold_1202 ensembl protein_coding_gene 454 800 . + . ID=Phyra86746;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1202000001;logic_name=jgi_phyra1 scaffold_1202 ensembl transcript 454 800 . + . ID=Phyra86746;Parent=Phyra86746;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1202 . CDS 454 756 . + 0 ID=Phyra86746;Parent=Phyra86746;rank=1 scaffold_1202 . exon 454 756 . + . ID=Phyra86746.1;Parent=Phyra86746;constitutive=1;rank=1 scaffold_1202 . CDS 798 800 . + 0 ID=Phyra86746;Parent=Phyra86746;rank=2 scaffold_1202 . exon 798 800 . + . ID=Phyra86746.2;Parent=Phyra86746;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1128 1 8005 scaffold_1128 . repeat_region 693 6643 . ? . description=dust scaffold_1128 . biological_region 6700 6700 0.999 + . logic_name=eponine scaffold_1128 . repeat_region 6788 6818 . ? . description=trf scaffold_1128 . repeat_region 7454 7496 . ? . description=trf scaffold_1128 . repeat_region 7595 7641 . ? . description=trf scaffold_1128 ensembl protein_coding_gene 48 593 . + . ID=Phyra40027;biotype=protein_coding;external_name=gwEuk.1128.4.1;logic_name=jgi_phyra1 scaffold_1128 ensembl transcript 48 593 . + . ID=Phyra40027;Parent=Phyra40027;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1128 . CDS 48 593 . + 0 ID=Phyra40027;Parent=Phyra40027;rank=1 scaffold_1128 . exon 48 593 . + . ID=Phyra40027.1;Parent=Phyra40027;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1086 1 8007 scaffold_1086 . repeat_region 1 929 . - . description=Gypsy-2-I_PI-int scaffold_1086 . repeat_region 931 2121 . - . description=Gypsy-2-I_PI-int scaffold_1086 . repeat_region 2125 7027 . ? . description=dust scaffold_1086 . repeat_region 7029 8001 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1088 1 8007 scaffold_1088 . repeat_region 452 459 . ? . description=dust scaffold_1088 . repeat_region 1140 6838 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1090 1 8007 scaffold_1090 . repeat_region 1000 6672 . ? . description=dust scaffold_1090 . repeat_region 7127 7749 . - . description=GypsyPi-1c_I-int scaffold_1090 ensembl protein_coding_gene 7229 7941 . - . ID=Phyra86707;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1090000001;logic_name=jgi_phyra1 scaffold_1090 ensembl transcript 7229 7941 . - . ID=Phyra86707;Parent=Phyra86707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1090 . CDS 7229 7239 . - 0 ID=Phyra86707;Parent=Phyra86707;rank=2 scaffold_1090 . exon 7229 7239 . - . ID=Phyra86707.2;Parent=Phyra86707;constitutive=1;ensembl_phase=1;rank=2 scaffold_1090 . CDS 7287 7941 . - 0 ID=Phyra86707;Parent=Phyra86707;rank=1 scaffold_1090 . exon 7287 7941 . - . ID=Phyra86707.1;Parent=Phyra86707;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1083 1 8013 scaffold_1083 . repeat_region 654 701 . ? . description=dust scaffold_1083 . repeat_region 1026 6819 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1075 1 8015 scaffold_1075 . repeat_region 31 77 . ? . description=trf scaffold_1075 . repeat_region 798 6537 . ? . description=dust scaffold_1075 . biological_region 7231 7233 0.999 + . logic_name=eponine scaffold_1075 ensembl protein_coding_gene 164 774 . + . ID=Phyra86700;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1075000001;logic_name=jgi_phyra1 scaffold_1075 ensembl transcript 164 774 . + . ID=Phyra86700;Parent=Phyra86700;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1075 . CDS 164 643 . + 0 ID=Phyra86700;Parent=Phyra86700;rank=1 scaffold_1075 . exon 164 643 . + . ID=Phyra86700.1;Parent=Phyra86700;constitutive=1;rank=1 scaffold_1075 . CDS 682 774 . + 0 ID=Phyra86700;Parent=Phyra86700;rank=2 scaffold_1075 . exon 682 774 . + . ID=Phyra86700.2;Parent=Phyra86700;constitutive=1;rank=2 scaffold_1075 ensembl protein_coding_gene 6834 8005 . - . ID=Phyra86701;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1075000002;logic_name=jgi_phyra1 scaffold_1075 ensembl transcript 6834 8005 . - . ID=Phyra86701;Parent=Phyra86701;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1075 . CDS 6834 6845 . - 0 ID=Phyra86701;Parent=Phyra86701;rank=2 scaffold_1075 . exon 6834 6845 . - . ID=Phyra86701.2;Parent=Phyra86701;constitutive=1;rank=2 scaffold_1075 . CDS 6887 8005 . - 0 ID=Phyra86701;Parent=Phyra86701;rank=1 scaffold_1075 . exon 6887 8005 . - . ID=Phyra86701.1;Parent=Phyra86701;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1082 1 8015 scaffold_1082 . repeat_region 1111 6909 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1085 1 8015 scaffold_1085 . repeat_region 1624 6913 . ? . description=dust scaffold_1085 . repeat_region 7042 7103 . ? . description=dust scaffold_1085 . repeat_region 7044 7093 . ? . description=trf scaffold_1085 . repeat_region 7842 7885 . ? . description=trf scaffold_1085 ensembl protein_coding_gene 7509 7982 . + . ID=Phyra86704;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1085000001;logic_name=jgi_phyra1 scaffold_1085 ensembl transcript 7509 7982 . + . ID=Phyra86704;Parent=Phyra86704;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1085 . CDS 7509 7982 . + 0 ID=Phyra86704;Parent=Phyra86704;rank=1 scaffold_1085 . exon 7509 7982 . + . ID=Phyra86704.1;Parent=Phyra86704;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1080 1 8017 scaffold_1080 . repeat_region 956 6615 . ? . description=dust scaffold_1080 . biological_region 7240 7245 0.999 + . logic_name=eponine scaffold_1080 ensembl protein_coding_gene 7156 7890 . + . ID=Phyra86703;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1080000001;logic_name=jgi_phyra1 scaffold_1080 ensembl transcript 7156 7890 . + . ID=Phyra86703;Parent=Phyra86703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1080 . CDS 7156 7890 . + 0 ID=Phyra86703;Parent=Phyra86703;rank=1 scaffold_1080 . exon 7156 7890 . + . ID=Phyra86703.1;Parent=Phyra86703;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1150 1 8017 scaffold_1150 . repeat_region 1089 2642 . ? . description=dust scaffold_1150 . repeat_region 3439 7030 . ? . description=dust scaffold_1150 . repeat_region 7623 7872 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1078 1 8018 scaffold_1078 . repeat_region 1041 6787 . ? . description=dust scaffold_1078 . repeat_region 7297 7360 . ? . description=dust scaffold_1078 ensembl protein_coding_gene 17 374 . - . ID=Phyra86702;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1078000001;logic_name=jgi_phyra1 scaffold_1078 ensembl transcript 17 374 . - . ID=Phyra86702;Parent=Phyra86702;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1078 . CDS 17 374 . - 0 ID=Phyra86702;Parent=Phyra86702;rank=1 scaffold_1078 . exon 17 374 . - . ID=Phyra86702.1;Parent=Phyra86702;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1079 1 8018 scaffold_1079 . repeat_region 1251 7268 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1134 1 8018 scaffold_1134 . repeat_region 1819 3209 . ? . description=dust scaffold_1134 . biological_region 3464 3466 0.999 + . logic_name=eponine scaffold_1134 . biological_region 3887 3890 0.999 - . logic_name=eponine scaffold_1134 . repeat_region 4068 4387 . ? . description=dust scaffold_1134 . repeat_region 5170 5182 . ? . description=dust scaffold_1134 . repeat_region 5392 6515 . ? . description=dust scaffold_1134 ensembl protein_coding_gene 33 851 . + . ID=Phyra72452;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1134000001;logic_name=jgi_phyra1 scaffold_1134 ensembl transcript 33 851 . + . ID=Phyra72452;Parent=Phyra72452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1134 . CDS 33 851 . + 0 ID=Phyra72452;Parent=Phyra72452;rank=1 scaffold_1134 . exon 33 851 . + . ID=Phyra72452.1;Parent=Phyra72452;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1076 1 8019 scaffold_1076 . repeat_region 980 6955 . ? . description=dust scaffold_1076 . repeat_region 7903 7936 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1070 1 8027 scaffold_1070 . repeat_region 79 1019 . - . description=GypsyPi-1c_I-int scaffold_1070 . repeat_region 1056 1426 . - . description=GypsyPi-1c_I-int scaffold_1070 . biological_region 1386 1391 0.999 - . logic_name=eponine scaffold_1070 . repeat_region 1429 7009 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1072 1 8029 scaffold_1072 . repeat_region 1286 6988 . ? . description=dust scaffold_1072 . repeat_region 7367 7390 . ? . description=dust scaffold_1072 . repeat_region 7989 7997 . ? . description=dust scaffold_1072 ensembl protein_coding_gene 516 1202 . - . ID=Phyra86698;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1072000001;logic_name=jgi_phyra1 scaffold_1072 ensembl transcript 516 1202 . - . ID=Phyra86698;Parent=Phyra86698;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1072 . CDS 516 1202 . - 0 ID=Phyra86698;Parent=Phyra86698;rank=1 scaffold_1072 . exon 516 1202 . - . ID=Phyra86698.1;Parent=Phyra86698;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1069 1 8031 scaffold_1069 . biological_region 587 588 0.999 + . logic_name=eponine scaffold_1069 . biological_region 815 819 0.999 + . logic_name=eponine scaffold_1069 . repeat_region 1085 2510 . ? . description=dust scaffold_1069 . repeat_region 3920 5003 . ? . description=dust scaffold_1069 . repeat_region 5773 5797 . ? . description=trf scaffold_1069 . repeat_region 7505 7591 . ? . description=trf scaffold_1069 ensembl protein_coding_gene 5327 7497 . - . ID=Phyra86696;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1069000001;logic_name=jgi_phyra1 scaffold_1069 ensembl transcript 5327 7497 . - . ID=Phyra86696;Parent=Phyra86696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1069 . CDS 5327 7314 . - 0 ID=Phyra86696;Parent=Phyra86696;rank=2 scaffold_1069 . exon 5327 7314 . - . ID=Phyra86696.2;Parent=Phyra86696;constitutive=1;ensembl_phase=1;rank=2 scaffold_1069 . CDS 7407 7497 . - 0 ID=Phyra86696;Parent=Phyra86696;rank=1 scaffold_1069 . exon 7407 7497 . - . ID=Phyra86696.1;Parent=Phyra86696;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1074 1 8031 scaffold_1074 . repeat_region 666 681 . ? . description=dust scaffold_1074 . repeat_region 800 6676 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1068 1 8032 scaffold_1068 . repeat_region 984 992 . ? . description=dust scaffold_1068 . repeat_region 1087 7014 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1067 1 8034 scaffold_1067 . repeat_region 1095 6921 . ? . description=dust scaffold_1067 . repeat_region 7634 7643 . ? . description=dust scaffold_1067 . repeat_region 7706 7743 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1061 1 8035 scaffold_1061 . repeat_region 773 1124 . ? . description=trf scaffold_1061 . repeat_region 902 974 . ? . description=trf scaffold_1061 . repeat_region 914 975 . ? . description=trf scaffold_1061 . repeat_region 1130 6132 . ? . description=dust scaffold_1061 . repeat_region 7491 7500 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1114 1 8035 scaffold_1114 . repeat_region 1017 1057 . ? . description=trf scaffold_1114 . repeat_region 1305 2429 . ? . description=dust scaffold_1114 . repeat_region 2622 2629 . ? . description=dust scaffold_1114 . repeat_region 2978 2992 . ? . description=dust scaffold_1114 . repeat_region 3214 7285 . ? . description=dust scaffold_1114 ensembl protein_coding_gene 18 972 . - . ID=Phyra86719;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1114000001;logic_name=jgi_phyra1 scaffold_1114 ensembl transcript 18 972 . - . ID=Phyra86719;Parent=Phyra86719;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1114 . CDS 18 489 . - 0 ID=Phyra86719;Parent=Phyra86719;rank=2 scaffold_1114 . exon 18 489 . - . ID=Phyra86719.2;Parent=Phyra86719;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1114 . CDS 540 972 . - 0 ID=Phyra86719;Parent=Phyra86719;rank=1 scaffold_1114 . exon 540 972 . - . ID=Phyra86719.1;Parent=Phyra86719;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1066 1 8036 scaffold_1066 . repeat_region 909 6866 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1065 1 8038 scaffold_1065 . repeat_region 1243 7218 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1064 1 8039 scaffold_1064 . repeat_region 699 1053 . - . description=GypsyPi-1c_I-int scaffold_1064 . repeat_region 1061 6788 . ? . description=dust scaffold_1064 . repeat_region 7236 7706 . - . description=GypsyPi-1c_I-int scaffold_1064 ensembl protein_coding_gene 820 1059 . - . ID=Phyra39426;biotype=protein_coding;external_name=gwEuk.1064.1.1;logic_name=jgi_phyra1 scaffold_1064 ensembl transcript 820 1059 . - . ID=Phyra39426;Parent=Phyra39426;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1064 . CDS 820 1059 . - 0 ID=Phyra39426;Parent=Phyra39426;rank=1 scaffold_1064 . exon 820 1059 . - . ID=Phyra39426.1;Parent=Phyra39426;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1062 1 8042 scaffold_1062 . repeat_region 1169 2199 . ? . description=dust scaffold_1062 . repeat_region 3316 7099 . ? . description=dust scaffold_1062 . biological_region 7148 7150 0.999 + . logic_name=eponine scaffold_1062 . biological_region 7192 7198 0.999 + . logic_name=eponine scaffold_1062 . biological_region 7196 7201 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1059 1 8051 scaffold_1059 . biological_region 593 596 0.999 + . logic_name=eponine scaffold_1059 . biological_region 644 647 0.999 + . logic_name=eponine scaffold_1059 . biological_region 746 750 0.999 + . logic_name=eponine scaffold_1059 . biological_region 801 802 0.999 + . logic_name=eponine scaffold_1059 . repeat_region 1306 7290 . ? . description=dust scaffold_1059 . repeat_region 7667 7777 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1052 1 8058 scaffold_1052 . repeat_region 1148 6803 . ? . description=dust scaffold_1052 ensembl protein_coding_gene 7627 8016 . + . ID=Phyra86690;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1052000001;logic_name=jgi_phyra1 scaffold_1052 ensembl transcript 7627 8016 . + . ID=Phyra86690;Parent=Phyra86690;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1052 . CDS 7627 8016 . + 0 ID=Phyra86690;Parent=Phyra86690;rank=1 scaffold_1052 . exon 7627 8016 . + . ID=Phyra86690.1;Parent=Phyra86690;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1049 1 8064 scaffold_1049 . repeat_region 19 730 . + . description=GypsyPi-1c_I-int scaffold_1049 . repeat_region 1166 6981 . ? . description=dust scaffold_1049 ensembl protein_coding_gene 406 584 . + . ID=Phyra39313;biotype=protein_coding;external_name=gwEuk.1049.1.1;logic_name=jgi_phyra1 scaffold_1049 ensembl transcript 406 584 . + . ID=Phyra39313;Parent=Phyra39313;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1049 . CDS 406 584 . + 0 ID=Phyra39313;Parent=Phyra39313;rank=1 scaffold_1049 . exon 406 584 . + . ID=Phyra39313.1;Parent=Phyra39313;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1050 1 8064 scaffold_1050 . repeat_region 1511 6702 . ? . description=dust scaffold_1050 ensembl protein_coding_gene 7778 8062 . + . ID=Phyra39368;biotype=protein_coding;external_name=gwEuk.1050.3.1;logic_name=jgi_phyra1 scaffold_1050 ensembl transcript 7778 8062 . + . ID=Phyra39368;Parent=Phyra39368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1050 . CDS 7778 8062 . + 0 ID=Phyra39368;Parent=Phyra39368;rank=1 scaffold_1050 . exon 7778 8062 . + . ID=Phyra39368.1;Parent=Phyra39368;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1047 1 8065 scaffold_1047 . repeat_region 528 578 . ? . description=dust scaffold_1047 . repeat_region 1391 7409 . ? . description=dust scaffold_1047 . repeat_region 7768 7810 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1054 1 8065 scaffold_1054 . repeat_region 967 6491 . ? . description=dust scaffold_1054 . repeat_region 6683 6769 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1043 1 8069 scaffold_1043 . repeat_region 1295 6124 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1063 1 8069 scaffold_1063 . repeat_region 370 412 . ? . description=trf scaffold_1063 . repeat_region 1017 6792 . ? . description=dust scaffold_1063 . repeat_region 6929 6959 . ? . description=trf scaffold_1063 . biological_region 7072 7074 0.999 - . logic_name=eponine scaffold_1063 . repeat_region 7262 7304 . ? . description=trf scaffold_1063 ensembl protein_coding_gene 7600 8046 . + . ID=Phyra86695;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1063000001;logic_name=jgi_phyra1 scaffold_1063 ensembl transcript 7600 8046 . + . ID=Phyra86695;Parent=Phyra86695;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1063 . CDS 7600 8046 . + 0 ID=Phyra86695;Parent=Phyra86695;rank=1 scaffold_1063 . exon 7600 8046 . + . ID=Phyra86695.1;Parent=Phyra86695;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1045 1 8071 scaffold_1045 . repeat_region 559 569 . ? . description=dust scaffold_1045 . repeat_region 785 1060 . + . description=Polinton-1_PI scaffold_1045 . repeat_region 1144 6810 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1073 1 8071 scaffold_1073 . repeat_region 2793 2842 . ? . description=dust scaffold_1073 . repeat_region 5260 5293 . ? . description=trf scaffold_1073 . repeat_region 5616 6298 . ? . description=dust scaffold_1073 . biological_region 6782 6783 0.999 - . logic_name=eponine scaffold_1073 ensembl protein_coding_gene 6488 7803 . - . ID=Phyra86699;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1073000001;logic_name=jgi_phyra1 scaffold_1073 ensembl transcript 6488 7803 . - . ID=Phyra86699;Parent=Phyra86699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1073 . CDS 6488 6585 . - 0 ID=Phyra86699;Parent=Phyra86699;rank=3 scaffold_1073 . exon 6488 6585 . - . ID=Phyra86699.3;Parent=Phyra86699;constitutive=1;ensembl_phase=1;rank=3 scaffold_1073 . CDS 6886 7460 . - 0 ID=Phyra86699;Parent=Phyra86699;rank=2 scaffold_1073 . exon 6886 7460 . - . ID=Phyra86699.2;Parent=Phyra86699;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1073 . CDS 7664 7803 . - 0 ID=Phyra86699;Parent=Phyra86699;rank=1 scaffold_1073 . exon 7664 7803 . - . ID=Phyra86699.1;Parent=Phyra86699;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1046 1 8072 scaffold_1046 . repeat_region 2614 3040 . ? . description=dust scaffold_1046 . repeat_region 3116 3136 . ? . description=trf scaffold_1046 . repeat_region 3876 7290 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1044 1 8074 scaffold_1044 . repeat_region 1160 6842 . ? . description=dust scaffold_1044 . biological_region 7000 7001 0.999 + . logic_name=eponine scaffold_1044 . repeat_region 7075 7349 . - . description=GypsyPi-1c_I-int scaffold_1044 . repeat_region 7598 8057 . - . description=GypsyPi-1c_I-int scaffold_1044 ensembl protein_coding_gene 7719 8051 . - . ID=Phyra39312;biotype=protein_coding;external_name=gwEuk.1044.3.1;logic_name=jgi_phyra1 scaffold_1044 ensembl transcript 7719 8051 . - . ID=Phyra39312;Parent=Phyra39312;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1044 . CDS 7719 8051 . - 0 ID=Phyra39312;Parent=Phyra39312;rank=1 scaffold_1044 . exon 7719 8051 . - . ID=Phyra39312.1;Parent=Phyra39312;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1041 1 8078 scaffold_1041 . repeat_region 1528 7135 . ? . description=dust scaffold_1041 ensembl protein_coding_gene 538 1230 . - . ID=Phyra39309;biotype=protein_coding;external_name=gwEuk.1041.2.1;logic_name=jgi_phyra1 scaffold_1041 ensembl transcript 538 1230 . - . ID=Phyra39309;Parent=Phyra39309;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1041 . CDS 538 1230 . - 0 ID=Phyra39309;Parent=Phyra39309;rank=1 scaffold_1041 . exon 538 1230 . - . ID=Phyra39309.1;Parent=Phyra39309;constitutive=1;rank=1 scaffold_1041 ensembl protein_coding_gene 7756 8056 . + . ID=Phyra86687;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1041000002;logic_name=jgi_phyra1 scaffold_1041 ensembl transcript 7756 8056 . + . ID=Phyra86687;Parent=Phyra86687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1041 . CDS 7756 8056 . + 0 ID=Phyra86687;Parent=Phyra86687;rank=1 scaffold_1041 . exon 7756 8056 . + . ID=Phyra86687.1;Parent=Phyra86687;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1092 1 8079 scaffold_1092 . biological_region 510 514 0.999 + . logic_name=eponine scaffold_1092 . biological_region 915 919 0.999 - . logic_name=eponine scaffold_1092 . repeat_region 968 6341 . ? . description=dust scaffold_1092 . repeat_region 7253 7321 . ? . description=trf scaffold_1092 . repeat_region 7255 7321 . ? . description=trf scaffold_1092 . repeat_region 7393 7477 . ? . description=trf scaffold_1092 . repeat_region 7585 7649 . ? . description=trf scaffold_1092 . repeat_region 7585 7649 . ? . description=trf scaffold_1092 . repeat_region 7588 7648 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1040 1 8080 scaffold_1040 . repeat_region 1400 2326 . ? . description=dust scaffold_1040 . repeat_region 2327 3431 . + . description=GypsyPi-1c_I-int scaffold_1040 . repeat_region 3684 7235 . ? . description=dust scaffold_1040 ensembl protein_coding_gene 2489 2758 . + . ID=Phyra39307;biotype=protein_coding;external_name=gwEuk.1040.1.1;logic_name=jgi_phyra1 scaffold_1040 ensembl transcript 2489 2758 . + . ID=Phyra39307;Parent=Phyra39307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1040 . CDS 2489 2758 . + 0 ID=Phyra39307;Parent=Phyra39307;rank=1 scaffold_1040 . exon 2489 2758 . + . ID=Phyra39307.1;Parent=Phyra39307;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1039 1 8082 scaffold_1039 . repeat_region 1295 7105 . ? . description=dust scaffold_1039 ensembl protein_coding_gene 24 1043 . - . ID=Phyra86685;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1039000001;logic_name=jgi_phyra1 scaffold_1039 ensembl transcript 24 1043 . - . ID=Phyra86685;Parent=Phyra86685;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1039 . CDS 24 1043 . - 0 ID=Phyra86685;Parent=Phyra86685;rank=1 scaffold_1039 . exon 24 1043 . - . ID=Phyra86685.1;Parent=Phyra86685;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1035 1 8086 scaffold_1035 . repeat_region 4 59 . ? . description=trf scaffold_1035 . repeat_region 298 441 . ? . description=trf scaffold_1035 . repeat_region 298 460 . ? . description=trf scaffold_1035 . repeat_region 298 460 . ? . description=trf scaffold_1035 . repeat_region 298 479 . ? . description=trf scaffold_1035 . biological_region 1107 1110 0.999 - . logic_name=eponine scaffold_1035 . repeat_region 1258 4731 . ? . description=dust scaffold_1035 . repeat_region 5666 6689 . ? . description=dust scaffold_1035 . repeat_region 6781 6867 . ? . description=trf scaffold_1035 . repeat_region 7464 7471 . ? . description=dust scaffold_1035 ensembl protein_coding_gene 211 1037 . - . ID=Phyra86684;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1035000001;logic_name=jgi_phyra1 scaffold_1035 ensembl transcript 211 1037 . - . ID=Phyra86684;Parent=Phyra86684;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1035 . CDS 211 449 . - 0 ID=Phyra86684;Parent=Phyra86684;rank=2 scaffold_1035 . exon 211 449 . - . ID=Phyra86684.2;Parent=Phyra86684;constitutive=1;ensembl_phase=1;rank=2 scaffold_1035 . CDS 491 1037 . - 0 ID=Phyra86684;Parent=Phyra86684;rank=1 scaffold_1035 . exon 491 1037 . - . ID=Phyra86684.1;Parent=Phyra86684;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1042 1 8086 scaffold_1042 . repeat_region 966 6944 . ? . description=dust scaffold_1042 . repeat_region 7060 7109 . ? . description=trf scaffold_1042 . repeat_region 7182 7239 . ? . description=trf scaffold_1042 . repeat_region 7810 7845 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1038 1 8089 scaffold_1038 . repeat_region 703 889 . + . description=GypsyPi-1c_LTR scaffold_1038 . repeat_region 912 6880 . ? . description=dust scaffold_1038 . repeat_region 7780 7811 . ? . description=trf scaffold_1038 ensembl pseudogene 7324 7724 . - . ID=Phyra39262;biotype=pseudogene;external_name=gwEuk.1038.3.1;logic_name=jgi_phyra1 scaffold_1038 ensembl pseudogene 7324 7724 . - . ID=Phyra39262;Parent=Phyra39262;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1038 . exon 7324 7724 . - . ID=Phyra39262.1;Parent=Phyra39262;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1036 1 8095 scaffold_1036 . repeat_region 14 230 . - . description=Polinton-1_PI scaffold_1036 . repeat_region 739 746 . ? . description=dust scaffold_1036 . repeat_region 802 1028 . - . description=Polinton-1_PI scaffold_1036 . repeat_region 1030 6832 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1058 1 8097 scaffold_1058 . biological_region 817 821 0.999 - . logic_name=eponine scaffold_1058 . repeat_region 1423 7221 . ? . description=dust scaffold_1058 ensembl protein_coding_gene 49 948 . + . ID=Phyra86694;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1058000001;logic_name=jgi_phyra1 scaffold_1058 ensembl transcript 49 948 . + . ID=Phyra86694;Parent=Phyra86694;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1058 . CDS 49 948 . + 0 ID=Phyra86694;Parent=Phyra86694;rank=1 scaffold_1058 . exon 49 948 . + . ID=Phyra86694.1;Parent=Phyra86694;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1033 1 8098 scaffold_1033 . biological_region 52 55 0.999 + . logic_name=eponine scaffold_1033 . biological_region 121 128 0.999 - . logic_name=eponine scaffold_1033 . biological_region 179 183 0.999 + . logic_name=eponine scaffold_1033 . biological_region 304 306 0.999 - . logic_name=eponine scaffold_1033 . biological_region 414 418 0.999 + . logic_name=eponine scaffold_1033 . biological_region 584 588 0.999 - . logic_name=eponine scaffold_1033 . repeat_region 877 6931 . ? . description=dust scaffold_1033 . biological_region 7679 7683 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1034 1 8098 scaffold_1034 . repeat_region 1055 2579 . ? . description=dust scaffold_1034 . repeat_region 5220 6952 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1032 1 8102 scaffold_1032 . repeat_region 296 337 . ? . description=trf scaffold_1032 . repeat_region 1143 7123 . ? . description=dust scaffold_1032 ensembl protein_coding_gene 230 981 . - . ID=Phyra86682;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1032000001;logic_name=jgi_phyra1 scaffold_1032 ensembl transcript 230 981 . - . ID=Phyra86682;Parent=Phyra86682;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1032 . CDS 230 275 . - 0 ID=Phyra86682;Parent=Phyra86682;rank=2 scaffold_1032 . exon 230 275 . - . ID=Phyra86682.2;Parent=Phyra86682;constitutive=1;ensembl_phase=2;rank=2 scaffold_1032 . CDS 416 981 . - 0 ID=Phyra86682;Parent=Phyra86682;rank=1 scaffold_1032 . exon 416 981 . - . ID=Phyra86682.1;Parent=Phyra86682;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1032 ensembl protein_coding_gene 7451 8071 . + . ID=Phyra86683;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1032000002;logic_name=jgi_phyra1 scaffold_1032 ensembl transcript 7451 8071 . + . ID=Phyra86683;Parent=Phyra86683;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1032 . CDS 7451 8071 . + 0 ID=Phyra86683;Parent=Phyra86683;rank=1 scaffold_1032 . exon 7451 8071 . + . ID=Phyra86683.1;Parent=Phyra86683;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1056 1 8102 scaffold_1056 . repeat_region 820 835 . ? . description=dust scaffold_1056 . repeat_region 1314 2477 . ? . description=dust scaffold_1056 . biological_region 3495 3497 0.999 - . logic_name=eponine scaffold_1056 . repeat_region 3825 6615 . ? . description=dust scaffold_1056 . repeat_region 6708 6715 . ? . description=dust scaffold_1056 ensembl protein_coding_gene 2627 3070 . + . ID=Phyra72448;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1056000001;logic_name=jgi_phyra1 scaffold_1056 ensembl transcript 2627 3070 . + . ID=Phyra72448;Parent=Phyra72448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1056 . CDS 2627 3070 . + 0 ID=Phyra72448;Parent=Phyra72448;rank=1 scaffold_1056 . exon 2627 3070 . + . ID=Phyra72448.1;Parent=Phyra72448;constitutive=1;rank=1 scaffold_1056 ensembl protein_coding_gene 6795 7184 . + . ID=Phyra86693;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1056000002;logic_name=jgi_phyra1 scaffold_1056 ensembl transcript 6795 7184 . + . ID=Phyra86693;Parent=Phyra86693;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1056 . CDS 6795 7184 . + 0 ID=Phyra86693;Parent=Phyra86693;rank=1 scaffold_1056 . exon 6795 7184 . + . ID=Phyra86693.1;Parent=Phyra86693;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1031 1 8103 scaffold_1031 . repeat_region 997 6768 . ? . description=dust scaffold_1031 ensembl protein_coding_gene 426 947 . - . ID=Phyra86681;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1031000001;logic_name=jgi_phyra1 scaffold_1031 ensembl transcript 426 947 . - . ID=Phyra86681;Parent=Phyra86681;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1031 . CDS 426 947 . - 0 ID=Phyra86681;Parent=Phyra86681;rank=1 scaffold_1031 . exon 426 947 . - . ID=Phyra86681.1;Parent=Phyra86681;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1030 1 8106 scaffold_1030 . biological_region 305 310 0.999 - . logic_name=eponine scaffold_1030 . repeat_region 1107 6815 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1188 1 8107 scaffold_1188 . biological_region 667 670 0.999 - . logic_name=eponine scaffold_1188 . repeat_region 824 4006 . ? . description=dust scaffold_1188 . repeat_region 5045 6508 . ? . description=dust scaffold_1188 . repeat_region 6669 6677 . ? . description=dust scaffold_1188 ensembl protein_coding_gene 22 733 . - . ID=Phyra86742;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1188000001;logic_name=jgi_phyra1 scaffold_1188 ensembl transcript 22 733 . - . ID=Phyra86742;Parent=Phyra86742;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1188 . CDS 22 733 . - 0 ID=Phyra86742;Parent=Phyra86742;rank=1 scaffold_1188 . exon 22 733 . - . ID=Phyra86742.1;Parent=Phyra86742;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1188 ensembl protein_coding_gene 6615 7627 . + . ID=Phyra86743;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1188000002;logic_name=jgi_phyra1 scaffold_1188 ensembl transcript 6615 7627 . + . ID=Phyra86743;Parent=Phyra86743;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1188 . CDS 6615 6647 . + 0 ID=Phyra86743;Parent=Phyra86743;rank=1 scaffold_1188 . exon 6615 6647 . + . ID=Phyra86743.1;Parent=Phyra86743;constitutive=1;rank=1 scaffold_1188 . CDS 6726 6897 . + 0 ID=Phyra86743;Parent=Phyra86743;rank=2 scaffold_1188 . exon 6726 6897 . + . ID=Phyra86743.2;Parent=Phyra86743;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1188 . CDS 6960 7101 . + 0 ID=Phyra86743;Parent=Phyra86743;rank=3 scaffold_1188 . exon 6960 7101 . + . ID=Phyra86743.3;Parent=Phyra86743;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1188 . CDS 7158 7408 . + 0 ID=Phyra86743;Parent=Phyra86743;rank=4 scaffold_1188 . exon 7158 7408 . + . ID=Phyra86743.4;Parent=Phyra86743;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_1188 . CDS 7506 7539 . + 0 ID=Phyra86743;Parent=Phyra86743;rank=5 scaffold_1188 . exon 7506 7539 . + . ID=Phyra86743.5;Parent=Phyra86743;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_1188 . CDS 7606 7627 . + 0 ID=Phyra86743;Parent=Phyra86743;rank=6 scaffold_1188 . exon 7606 7627 . + . ID=Phyra86743.6;Parent=Phyra86743;constitutive=1;ensembl_phase=2;rank=6 ##gff-version 3 ##sequence-region scaffold_1051 1 8108 scaffold_1051 . biological_region 295 298 0.999 - . logic_name=eponine scaffold_1051 . biological_region 877 881 0.999 + . logic_name=eponine scaffold_1051 . biological_region 919 923 0.999 + . logic_name=eponine scaffold_1051 . repeat_region 957 1023 . ? . description=trf scaffold_1051 . repeat_region 1148 3837 . ? . description=dust scaffold_1051 . repeat_region 5261 5945 . ? . description=dust scaffold_1051 . repeat_region 6822 6871 . ? . description=dust scaffold_1051 ensembl protein_coding_gene 58 1074 . + . ID=Phyra86689;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1051000001;logic_name=jgi_phyra1 scaffold_1051 ensembl transcript 58 1074 . + . ID=Phyra86689;Parent=Phyra86689;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1051 . CDS 58 279 . + 0 ID=Phyra86689;Parent=Phyra86689;rank=1 scaffold_1051 . exon 58 279 . + . ID=Phyra86689.1;Parent=Phyra86689;constitutive=1;rank=1 scaffold_1051 . CDS 360 1040 . + 0 ID=Phyra86689;Parent=Phyra86689;rank=2 scaffold_1051 . exon 360 1040 . + . ID=Phyra86689.2;Parent=Phyra86689;constitutive=1;rank=2 scaffold_1051 . CDS 1072 1074 . + 0 ID=Phyra86689;Parent=Phyra86689;rank=3 scaffold_1051 . exon 1072 1074 . + . ID=Phyra86689.3;Parent=Phyra86689;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1037 1 8115 scaffold_1037 . biological_region 1410 1417 0.999 - . logic_name=eponine scaffold_1037 . repeat_region 1479 2067 . ? . description=dust scaffold_1037 . biological_region 3472 3474 0.999 + . logic_name=eponine scaffold_1037 . biological_region 3494 3498 0.999 + . logic_name=eponine scaffold_1037 . biological_region 4391 4396 0.999 + . logic_name=eponine scaffold_1037 . repeat_region 4881 7406 . ? . description=dust scaffold_1037 . repeat_region 7407 8113 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1027 1 8116 scaffold_1027 . repeat_region 883 6891 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1071 1 8116 scaffold_1071 . repeat_region 1077 6742 . ? . description=dust scaffold_1071 . biological_region 6967 6972 0.999 - . logic_name=eponine scaffold_1071 . biological_region 7026 7027 0.999 + . logic_name=eponine scaffold_1071 ensembl protein_coding_gene 7333 7996 . + . ID=Phyra86697;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1071000001;logic_name=jgi_phyra1 scaffold_1071 ensembl transcript 7333 7996 . + . ID=Phyra86697;Parent=Phyra86697;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1071 . CDS 7333 7354 . + 0 ID=Phyra86697;Parent=Phyra86697;rank=1 scaffold_1071 . exon 7333 7354 . + . ID=Phyra86697.1;Parent=Phyra86697;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1071 . CDS 7380 7996 . + 0 ID=Phyra86697;Parent=Phyra86697;rank=2 scaffold_1071 . exon 7380 7996 . + . ID=Phyra86697.2;Parent=Phyra86697;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1026 1 8117 scaffold_1026 . repeat_region 1472 6765 . ? . description=dust scaffold_1026 ensembl protein_coding_gene 744 1367 . - . ID=Phyra86679;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1026000001;logic_name=jgi_phyra1 scaffold_1026 ensembl transcript 744 1367 . - . ID=Phyra86679;Parent=Phyra86679;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1026 . CDS 744 1367 . - 0 ID=Phyra86679;Parent=Phyra86679;rank=1 scaffold_1026 . exon 744 1367 . - . ID=Phyra86679.1;Parent=Phyra86679;constitutive=1;rank=1 scaffold_1026 ensembl protein_coding_gene 7719 8105 . + . ID=Phyra86680;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1026000002;logic_name=jgi_phyra1 scaffold_1026 ensembl transcript 7719 8105 . + . ID=Phyra86680;Parent=Phyra86680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1026 . CDS 7719 8105 . + 0 ID=Phyra86680;Parent=Phyra86680;rank=1 scaffold_1026 . exon 7719 8105 . + . ID=Phyra86680.1;Parent=Phyra86680;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1025 1 8118 scaffold_1025 . repeat_region 1066 6981 . ? . description=dust scaffold_1025 . repeat_region 7451 7506 . ? . description=trf scaffold_1025 ensembl protein_coding_gene 7756 8106 . - . ID=Phyra86678;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1025000001;logic_name=jgi_phyra1 scaffold_1025 ensembl transcript 7756 8106 . - . ID=Phyra86678;Parent=Phyra86678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1025 . CDS 7756 8106 . - 0 ID=Phyra86678;Parent=Phyra86678;rank=1 scaffold_1025 . exon 7756 8106 . - . ID=Phyra86678.1;Parent=Phyra86678;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1028 1 8119 scaffold_1028 . repeat_region 1052 7024 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1023 1 8120 scaffold_1023 . repeat_region 1091 2100 . ? . description=dust scaffold_1023 . repeat_region 3503 4383 . ? . description=dust scaffold_1023 . repeat_region 5567 6725 . ? . description=dust scaffold_1023 ensembl protein_coding_gene 7181 8065 . + . ID=Phyra86677;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1023000001;logic_name=jgi_phyra1 scaffold_1023 ensembl transcript 7181 8065 . + . ID=Phyra86677;Parent=Phyra86677;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1023 . CDS 7181 8065 . + 0 ID=Phyra86677;Parent=Phyra86677;rank=1 scaffold_1023 . exon 7181 8065 . + . ID=Phyra86677.1;Parent=Phyra86677;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1022 1 8122 scaffold_1022 . repeat_region 1112 7228 . ? . description=dust scaffold_1022 . biological_region 7541 7541 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1029 1 8126 scaffold_1029 . repeat_region 1154 7173 . ? . description=dust scaffold_1029 . biological_region 7666 7669 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1020 1 8127 scaffold_1020 . repeat_region 1093 7113 . ? . description=dust scaffold_1020 . repeat_region 7874 7963 . ? . description=dust scaffold_1020 . repeat_region 7887 7963 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1024 1 8127 scaffold_1024 . repeat_region 1103 6809 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1017 1 8129 scaffold_1017 . repeat_region 1254 7039 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1019 1 8129 scaffold_1019 . biological_region 312 314 0.999 - . logic_name=eponine scaffold_1019 . repeat_region 814 6895 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1018 1 8130 scaffold_1018 . repeat_region 1062 6712 . ? . description=dust scaffold_1018 . repeat_region 7001 7049 . ? . description=dust scaffold_1018 . repeat_region 7001 7053 . ? . description=trf scaffold_1018 . repeat_region 7005 7045 . ? . description=trf scaffold_1018 . repeat_region 7053 7065 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1120 1 8133 scaffold_1120 . repeat_region 33 349 . + . description=GypsyPi-1c_I-int scaffold_1120 . biological_region 298 306 0.999 - . logic_name=eponine scaffold_1120 . biological_region 611 613 0.999 - . logic_name=eponine scaffold_1120 . biological_region 646 651 0.999 - . logic_name=eponine scaffold_1120 . biological_region 665 671 0.999 + . logic_name=eponine scaffold_1120 . biological_region 903 907 0.999 - . logic_name=eponine scaffold_1120 . biological_region 1061 1066 0.999 + . logic_name=eponine scaffold_1120 . biological_region 1116 1118 0.999 + . logic_name=eponine scaffold_1120 . repeat_region 1121 1145 . ? . description=trf scaffold_1120 . biological_region 1166 1172 0.999 - . logic_name=eponine scaffold_1120 . repeat_region 1278 2535 . ? . description=dust scaffold_1120 . repeat_region 2867 2896 . ? . description=trf scaffold_1120 . biological_region 3429 3433 0.999 + . logic_name=eponine scaffold_1120 . biological_region 3470 3476 0.999 - . logic_name=eponine scaffold_1120 . repeat_region 3971 3983 . ? . description=dust scaffold_1120 . repeat_region 4485 4534 . ? . description=dust scaffold_1120 . biological_region 4535 4537 0.999 - . logic_name=eponine scaffold_1120 . biological_region 4638 4639 0.999 - . logic_name=eponine scaffold_1120 . biological_region 4689 4691 0.999 - . logic_name=eponine scaffold_1120 . repeat_region 5574 5945 . ? . description=dust scaffold_1120 . biological_region 6422 6426 0.999 - . logic_name=eponine scaffold_1120 . biological_region 7773 7773 0.999 + . logic_name=eponine scaffold_1120 ensembl protein_coding_gene 111 350 . + . ID=Phyra40023;biotype=protein_coding;external_name=gwEuk.1120.5.1;logic_name=jgi_phyra1 scaffold_1120 ensembl transcript 111 350 . + . ID=Phyra40023;Parent=Phyra40023;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1120 . CDS 111 350 . + 0 ID=Phyra40023;Parent=Phyra40023;rank=1 scaffold_1120 . exon 111 350 . + . ID=Phyra40023.1;Parent=Phyra40023;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1016 1 8135 scaffold_1016 . repeat_region 937 6845 . ? . description=dust scaffold_1016 . repeat_region 6865 7648 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1013 1 8143 scaffold_1013 . repeat_region 574 601 . ? . description=trf scaffold_1013 . repeat_region 1133 6014 . ? . description=dust scaffold_1013 . biological_region 6630 6632 0.999 + . logic_name=eponine scaffold_1013 ensembl protein_coding_gene 6016 6486 . - . ID=Phyra39172;biotype=protein_coding;external_name=gwEuk.1013.3.1;logic_name=jgi_phyra1 scaffold_1013 ensembl transcript 6016 6486 . - . ID=Phyra39172;Parent=Phyra39172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1013 . CDS 6016 6486 . - 0 ID=Phyra39172;Parent=Phyra39172;rank=1 scaffold_1013 . exon 6016 6486 . - . ID=Phyra39172.1;Parent=Phyra39172;constitutive=1;rank=1 scaffold_1013 ensembl protein_coding_gene 6525 8103 . - . ID=Phyra86676;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1013000001;logic_name=jgi_phyra1 scaffold_1013 ensembl transcript 6525 8103 . - . ID=Phyra86676;Parent=Phyra86676;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1013 . CDS 6525 6538 . - 0 ID=Phyra86676;Parent=Phyra86676;rank=3 scaffold_1013 . exon 6525 6538 . - . ID=Phyra86676.3;Parent=Phyra86676;constitutive=1;ensembl_phase=1;rank=3 scaffold_1013 . CDS 6684 7440 . - 0 ID=Phyra86676;Parent=Phyra86676;rank=2 scaffold_1013 . exon 6684 7440 . - . ID=Phyra86676.2;Parent=Phyra86676;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1013 . CDS 7513 8103 . - 0 ID=Phyra86676;Parent=Phyra86676;rank=1 scaffold_1013 . exon 7513 8103 . - . ID=Phyra86676.1;Parent=Phyra86676;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1087 1 8144 scaffold_1087 . biological_region 441 441 0.999 - . logic_name=eponine scaffold_1087 . repeat_region 1231 2433 . ? . description=dust scaffold_1087 . repeat_region 3171 3358 . + . description=GypsyPi-1c_LTR scaffold_1087 . repeat_region 3438 7136 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1011 1 8145 scaffold_1011 . repeat_region 926 6998 . ? . description=dust scaffold_1011 ensembl protein_coding_gene 289 861 . + . ID=Phyra39169;biotype=protein_coding;external_name=gwEuk.1011.3.1;logic_name=jgi_phyra1 scaffold_1011 ensembl transcript 289 861 . + . ID=Phyra39169;Parent=Phyra39169;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1011 . CDS 289 861 . + 0 ID=Phyra39169;Parent=Phyra39169;rank=1 scaffold_1011 . exon 289 861 . + . ID=Phyra39169.1;Parent=Phyra39169;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1010 1 8146 scaffold_1010 . repeat_region 1207 7162 . ? . description=dust scaffold_1010 . repeat_region 7409 7495 . ? . description=trf scaffold_1010 . repeat_region 7409 7508 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1009 1 8148 scaffold_1009 . repeat_region 836 6582 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1012 1 8148 scaffold_1012 . repeat_region 215 245 . ? . description=trf scaffold_1012 . repeat_region 730 760 . ? . description=trf scaffold_1012 . repeat_region 907 6948 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1006 1 8149 scaffold_1006 . repeat_region 1 142 . ? . description=trf scaffold_1006 . repeat_region 1225 7032 . ? . description=dust scaffold_1006 . biological_region 7942 7943 0.999 - . logic_name=eponine scaffold_1006 ensembl protein_coding_gene 7042 7347 . + . ID=Phyra39116;biotype=protein_coding;external_name=gwEuk.1006.1.1;logic_name=jgi_phyra1 scaffold_1006 ensembl transcript 7042 7347 . + . ID=Phyra39116;Parent=Phyra39116;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1006 . CDS 7042 7347 . + 0 ID=Phyra39116;Parent=Phyra39116;rank=1 scaffold_1006 . exon 7042 7347 . + . ID=Phyra39116.1;Parent=Phyra39116;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1008 1 8149 scaffold_1008 . repeat_region 699 706 . ? . description=dust scaffold_1008 . biological_region 762 767 0.999 - . logic_name=eponine scaffold_1008 . biological_region 842 843 0.999 - . logic_name=eponine scaffold_1008 . repeat_region 1138 1229 . + . description=Polinton-1_PI scaffold_1008 . repeat_region 1657 1664 . ? . description=dust scaffold_1008 . repeat_region 1855 6439 . ? . description=dust scaffold_1008 ensembl protein_coding_gene 6773 7681 . + . ID=Phyra86675;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1008000001;logic_name=jgi_phyra1 scaffold_1008 ensembl transcript 6773 7681 . + . ID=Phyra86675;Parent=Phyra86675;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1008 . CDS 6773 7681 . + 0 ID=Phyra86675;Parent=Phyra86675;rank=1 scaffold_1008 . exon 6773 7681 . + . ID=Phyra86675.1;Parent=Phyra86675;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1007 1 8151 scaffold_1007 . biological_region 499 500 0.999 + . logic_name=eponine scaffold_1007 . biological_region 571 573 0.999 - . logic_name=eponine scaffold_1007 . biological_region 598 599 0.999 - . logic_name=eponine scaffold_1007 . repeat_region 915 6597 . ? . description=dust scaffold_1007 . biological_region 6755 6762 0.999 - . logic_name=eponine scaffold_1007 . biological_region 6764 6771 0.999 + . logic_name=eponine scaffold_1007 . biological_region 6782 6787 0.999 - . logic_name=eponine scaffold_1007 . biological_region 6989 6993 0.999 + . logic_name=eponine scaffold_1007 . biological_region 7643 7645 0.999 + . logic_name=eponine scaffold_1007 . biological_region 7686 7688 0.999 - . logic_name=eponine scaffold_1007 ensembl protein_coding_gene 6870 7661 . + . ID=Phyra86674;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1007000001;logic_name=jgi_phyra1 scaffold_1007 ensembl transcript 6870 7661 . + . ID=Phyra86674;Parent=Phyra86674;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1007 . CDS 6870 7661 . + 0 ID=Phyra86674;Parent=Phyra86674;rank=1 scaffold_1007 . exon 6870 7661 . + . ID=Phyra86674.1;Parent=Phyra86674;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1014 1 8153 scaffold_1014 . repeat_region 673 6772 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1004 1 8154 scaffold_1004 . repeat_region 1052 6720 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1001 1 8160 scaffold_1001 . repeat_region 21 544 . + . description=Polinton-1_PI scaffold_1001 . repeat_region 262 270 . ? . description=dust scaffold_1001 . repeat_region 492 500 . ? . description=dust scaffold_1001 . repeat_region 695 1179 . + . description=Polinton-1_PI scaffold_1001 . repeat_region 1697 2165 . ? . description=dust scaffold_1001 . repeat_region 2281 3101 . + . description=Polinton-1_PI scaffold_1001 . repeat_region 3138 3145 . ? . description=dust scaffold_1001 . repeat_region 3509 7280 . ? . description=dust scaffold_1001 . repeat_region 7281 7554 . + . description=Polinton-1_PI scaffold_1001 . repeat_region 7557 7565 . ? . description=dust scaffold_1001 . repeat_region 7952 7959 . ? . description=dust scaffold_1001 . repeat_region 8024 8106 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1002 1 8160 scaffold_1002 . repeat_region 4000 7139 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_999 1 8161 scaffold_999 . repeat_region 1040 6857 . ? . description=dust scaffold_999 ensembl protein_coding_gene 526 645 . - . ID=Phyra55007;biotype=protein_coding;external_name=gwEuk.999.1.1;logic_name=jgi_phyra1 scaffold_999 ensembl transcript 526 645 . - . ID=Phyra55007;Parent=Phyra55007;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_999 . CDS 526 645 . - 0 ID=Phyra55007;Parent=Phyra55007;rank=1 scaffold_999 . exon 526 645 . - . ID=Phyra55007.1;Parent=Phyra55007;constitutive=1;rank=1 scaffold_999 ensembl protein_coding_gene 7061 7858 . - . ID=Phyra86673;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_999000001;logic_name=jgi_phyra1 scaffold_999 ensembl transcript 7061 7858 . - . ID=Phyra86673;Parent=Phyra86673;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_999 . CDS 7061 7858 . - 0 ID=Phyra86673;Parent=Phyra86673;rank=1 scaffold_999 . exon 7061 7858 . - . ID=Phyra86673.1;Parent=Phyra86673;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_998 1 8169 scaffold_998 . repeat_region 1235 7090 . ? . description=dust scaffold_998 . repeat_region 7253 7342 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_995 1 8173 scaffold_995 . repeat_region 1433 7152 . ? . description=dust scaffold_995 ensembl protein_coding_gene 198 589 . + . ID=Phyra86669;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_995000001;logic_name=jgi_phyra1 scaffold_995 ensembl transcript 198 589 . + . ID=Phyra86669;Parent=Phyra86669;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_995 . exon 198 589 . + . ID=Phyra86669.1;Parent=Phyra86669;constitutive=1;ensembl_phase=-1;rank=1 scaffold_995 . CDS 200 589 . + 0 ID=Phyra86669;Parent=Phyra86669;rank=1 ##gff-version 3 ##sequence-region scaffold_997 1 8173 scaffold_997 . repeat_region 17 1145 . + . description=GypsyPi-1c_I-int scaffold_997 . biological_region 79 85 0.999 - . logic_name=eponine scaffold_997 . repeat_region 1480 7110 . ? . description=dust scaffold_997 ensembl protein_coding_gene 143 1279 . + . ID=Phyra86672;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_997000001;logic_name=jgi_phyra1 scaffold_997 ensembl transcript 143 1279 . + . ID=Phyra86672;Parent=Phyra86672;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_997 . CDS 143 1279 . + 0 ID=Phyra86672;Parent=Phyra86672;rank=1 scaffold_997 . exon 143 1279 . + . ID=Phyra86672.1;Parent=Phyra86672;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_994 1 8174 scaffold_994 . biological_region 109 109 0.999 - . logic_name=eponine scaffold_994 . biological_region 1613 1618 0.999 - . logic_name=eponine scaffold_994 . repeat_region 1872 6746 . ? . description=dust scaffold_994 ensembl protein_coding_gene 7161 8112 . + . ID=Phyra86668;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_994000001;logic_name=jgi_phyra1 scaffold_994 ensembl transcript 7161 8112 . + . ID=Phyra86668;Parent=Phyra86668;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_994 . CDS 7161 8112 . + 0 ID=Phyra86668;Parent=Phyra86668;rank=1 scaffold_994 . exon 7161 8112 . + . ID=Phyra86668.1;Parent=Phyra86668;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_996 1 8175 scaffold_996 . repeat_region 1 278 . ? . description=trf scaffold_996 . repeat_region 6 268 . ? . description=trf scaffold_996 . repeat_region 6 268 . ? . description=trf scaffold_996 . repeat_region 51 268 . ? . description=trf scaffold_996 . biological_region 870 872 0.999 - . logic_name=eponine scaffold_996 . repeat_region 1810 6837 . ? . description=dust scaffold_996 ensembl protein_coding_gene 36 368 . + . ID=Phyra86670;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_996000001;logic_name=jgi_phyra1 scaffold_996 ensembl transcript 36 368 . + . ID=Phyra86670;Parent=Phyra86670;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_996 . CDS 36 368 . + 0 ID=Phyra86670;Parent=Phyra86670;rank=1 scaffold_996 . exon 36 368 . + . ID=Phyra86670.1;Parent=Phyra86670;constitutive=1;rank=1 scaffold_996 ensembl protein_coding_gene 687 1542 . + . ID=Phyra86671;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_996000002;logic_name=jgi_phyra1 scaffold_996 ensembl transcript 687 1542 . + . ID=Phyra86671;Parent=Phyra86671;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_996 . CDS 687 1490 . + 0 ID=Phyra86671;Parent=Phyra86671;rank=1 scaffold_996 . exon 687 1490 . + . ID=Phyra86671.1;Parent=Phyra86671;constitutive=1;rank=1 scaffold_996 . CDS 1534 1542 . + 0 ID=Phyra86671;Parent=Phyra86671;rank=2 scaffold_996 . exon 1534 1542 . + . ID=Phyra86671.2;Parent=Phyra86671;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_993 1 8176 scaffold_993 . repeat_region 5190 5199 . ? . description=dust scaffold_993 . repeat_region 5770 5777 . ? . description=dust scaffold_993 . biological_region 6005 6010 0.999 - . logic_name=eponine scaffold_993 . repeat_region 6421 7387 . ? . description=dust scaffold_993 . biological_region 7636 7637 0.999 - . logic_name=eponine scaffold_993 ensembl protein_coding_gene 477 2828 . - . ID=Phyra86665;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_993000001;logic_name=jgi_phyra1 scaffold_993 ensembl transcript 477 2828 . - . ID=Phyra86665;Parent=Phyra86665;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_993 . CDS 477 2828 . - 0 ID=Phyra86665;Parent=Phyra86665;rank=1 scaffold_993 . exon 477 2828 . - . ID=Phyra86665.1;Parent=Phyra86665;constitutive=1;rank=1 scaffold_993 ensembl protein_coding_gene 3094 4234 . + . ID=Phyra86666;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_993000002;logic_name=jgi_phyra1 scaffold_993 ensembl transcript 3094 4234 . + . ID=Phyra86666;Parent=Phyra86666;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_993 . CDS 3094 3816 . + 0 ID=Phyra86666;Parent=Phyra86666;rank=1 scaffold_993 . exon 3094 3816 . + . ID=Phyra86666.1;Parent=Phyra86666;constitutive=1;rank=1 scaffold_993 . CDS 3890 4234 . + 0 ID=Phyra86666;Parent=Phyra86666;rank=2 scaffold_993 . exon 3890 4234 . + . ID=Phyra86666.2;Parent=Phyra86666;constitutive=1;rank=2 scaffold_993 ensembl protein_coding_gene 6260 8172 . + . ID=Phyra86667;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_993000003;logic_name=jgi_phyra1 scaffold_993 ensembl transcript 6260 8172 . + . ID=Phyra86667;Parent=Phyra86667;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_993 . CDS 6260 6412 . + 0 ID=Phyra86667;Parent=Phyra86667;rank=1 scaffold_993 . exon 6260 6412 . + . ID=Phyra86667.1;Parent=Phyra86667;constitutive=1;rank=1 scaffold_993 . CDS 7410 8172 . + 0 ID=Phyra86667;Parent=Phyra86667;rank=2 scaffold_993 . exon 7410 8172 . + . ID=Phyra86667.2;Parent=Phyra86667;constitutive=1;ensembl_end_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_992 1 8178 scaffold_992 . biological_region 418 421 0.999 + . logic_name=eponine scaffold_992 . biological_region 973 974 0.999 - . logic_name=eponine scaffold_992 . repeat_region 1428 7041 . ? . description=dust scaffold_992 . biological_region 8029 8036 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_991 1 8183 scaffold_991 . repeat_region 11 146 . + . description=Gypsy-2-I_PI-int scaffold_991 . repeat_region 943 2692 . ? . description=dust scaffold_991 . repeat_region 2707 4856 . + . description=GypsyPi-1c_I-int scaffold_991 . repeat_region 4859 5300 . ? . description=dust scaffold_991 . biological_region 5931 5932 0.999 - . logic_name=eponine scaffold_991 . biological_region 6291 6293 0.999 + . logic_name=eponine scaffold_991 . biological_region 6593 6595 0.999 - . logic_name=eponine scaffold_991 . biological_region 6927 6929 0.999 + . logic_name=eponine scaffold_991 ensembl protein_coding_gene 3244 4116 . + . ID=Phyra72447;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_991000001;logic_name=jgi_phyra1 scaffold_991 ensembl transcript 3244 4116 . + . ID=Phyra72447;Parent=Phyra72447;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_991 . CDS 3244 4116 . + 0 ID=Phyra72447;Parent=Phyra72447;rank=1 scaffold_991 . exon 3244 4116 . + . ID=Phyra72447.1;Parent=Phyra72447;constitutive=1;rank=1 scaffold_991 ensembl protein_coding_gene 4549 5723 . + . ID=Phyra86663;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_991000002;logic_name=jgi_phyra1 scaffold_991 ensembl transcript 4549 5723 . + . ID=Phyra86663;Parent=Phyra86663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_991 . CDS 4549 4728 . + 0 ID=Phyra86663;Parent=Phyra86663;rank=1 scaffold_991 . exon 4549 4728 . + . ID=Phyra86663.1;Parent=Phyra86663;constitutive=1;rank=1 scaffold_991 . CDS 5547 5723 . + 0 ID=Phyra86663;Parent=Phyra86663;rank=2 scaffold_991 . exon 5547 5723 . + . ID=Phyra86663.2;Parent=Phyra86663;constitutive=1;rank=2 scaffold_991 ensembl protein_coding_gene 6690 7532 . - . ID=Phyra86664;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_991000003;logic_name=jgi_phyra1 scaffold_991 ensembl transcript 6690 7532 . - . ID=Phyra86664;Parent=Phyra86664;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_991 . CDS 6690 7532 . - 0 ID=Phyra86664;Parent=Phyra86664;rank=1 scaffold_991 . exon 6690 7532 . - . ID=Phyra86664.1;Parent=Phyra86664;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_988 1 8185 scaffold_988 . repeat_region 1032 6786 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_986 1 8190 scaffold_986 . biological_region 971 973 0.999 + . logic_name=eponine scaffold_986 . biological_region 1054 1059 0.999 - . logic_name=eponine scaffold_986 . repeat_region 1244 4510 . ? . description=dust scaffold_986 . repeat_region 5506 6782 . ? . description=dust scaffold_986 . repeat_region 6858 6918 . ? . description=trf scaffold_986 ensembl protein_coding_gene 7 645 . + . ID=Phyra86658;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_986000001;logic_name=jgi_phyra1 scaffold_986 ensembl transcript 7 645 . + . ID=Phyra86658;Parent=Phyra86658;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_986 . CDS 7 645 . + 0 ID=Phyra86658;Parent=Phyra86658;rank=1 scaffold_986 . exon 7 645 . + . ID=Phyra86658.1;Parent=Phyra86658;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_979 1 8195 scaffold_979 . repeat_region 953 1100 . ? . description=trf scaffold_979 . repeat_region 1324 7215 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_984 1 8195 scaffold_984 . biological_region 218 221 0.999 - . logic_name=eponine scaffold_984 . biological_region 233 235 0.999 + . logic_name=eponine scaffold_984 . biological_region 631 633 0.999 - . logic_name=eponine scaffold_984 . repeat_region 967 6669 . ? . description=dust scaffold_984 . biological_region 6772 6773 0.999 - . logic_name=eponine scaffold_984 ensembl protein_coding_gene 244 819 . - . ID=Phyra86654;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_984000001;logic_name=jgi_phyra1 scaffold_984 ensembl transcript 244 819 . - . ID=Phyra86654;Parent=Phyra86654;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_984 . CDS 244 819 . - 0 ID=Phyra86654;Parent=Phyra86654;rank=1 scaffold_984 . exon 244 819 . - . ID=Phyra86654.1;Parent=Phyra86654;constitutive=1;rank=1 scaffold_984 ensembl protein_coding_gene 6993 7838 . + . ID=Phyra86655;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_984000002;logic_name=jgi_phyra1 scaffold_984 ensembl transcript 6993 7838 . + . ID=Phyra86655;Parent=Phyra86655;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_984 . CDS 6993 7838 . + 0 ID=Phyra86655;Parent=Phyra86655;rank=1 scaffold_984 . exon 6993 7838 . + . ID=Phyra86655.1;Parent=Phyra86655;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_981 1 8196 scaffold_981 . repeat_region 545 607 . ? . description=dust scaffold_981 . repeat_region 1636 7111 . ? . description=dust scaffold_981 ensembl protein_coding_gene 7723 8065 . + . ID=Phyra86652;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_981000001;logic_name=jgi_phyra1 scaffold_981 ensembl transcript 7723 8065 . + . ID=Phyra86652;Parent=Phyra86652;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_981 . CDS 7723 8065 . + 0 ID=Phyra86652;Parent=Phyra86652;rank=1 scaffold_981 . exon 7723 8065 . + . ID=Phyra86652.1;Parent=Phyra86652;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_985 1 8196 scaffold_985 . biological_region 110 112 0.999 + . logic_name=eponine scaffold_985 . biological_region 823 827 0.999 + . logic_name=eponine scaffold_985 . biological_region 864 868 0.999 + . logic_name=eponine scaffold_985 . repeat_region 890 969 . ? . description=trf scaffold_985 . biological_region 1094 1099 0.999 + . logic_name=eponine scaffold_985 . biological_region 1318 1323 0.999 - . logic_name=eponine scaffold_985 . repeat_region 1817 7488 . ? . description=dust scaffold_985 ensembl protein_coding_gene 24 1547 . + . ID=Phyra86656;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_985000001;logic_name=jgi_phyra1 scaffold_985 ensembl transcript 24 1547 . + . ID=Phyra86656;Parent=Phyra86656;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_985 . CDS 24 1547 . + 0 ID=Phyra86656;Parent=Phyra86656;rank=1 scaffold_985 . exon 24 1547 . + . ID=Phyra86656.1;Parent=Phyra86656;constitutive=1;rank=1 scaffold_985 ensembl protein_coding_gene 7570 8094 . - . ID=Phyra86657;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_985000002;logic_name=jgi_phyra1 scaffold_985 ensembl transcript 7570 8094 . - . ID=Phyra86657;Parent=Phyra86657;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_985 . CDS 7570 8094 . - 0 ID=Phyra86657;Parent=Phyra86657;rank=1 scaffold_985 . exon 7570 8094 . - . ID=Phyra86657.1;Parent=Phyra86657;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_982 1 8197 scaffold_982 . repeat_region 1056 6619 . ? . description=dust scaffold_982 ensembl protein_coding_gene 6805 7245 . + . ID=Phyra72446;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_982000001;logic_name=jgi_phyra1 scaffold_982 ensembl transcript 6805 7245 . + . ID=Phyra72446;Parent=Phyra72446;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_982 . CDS 6805 7245 . + 0 ID=Phyra72446;Parent=Phyra72446;rank=1 scaffold_982 . exon 6805 7245 . + . ID=Phyra72446.1;Parent=Phyra72446;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_978 1 8199 scaffold_978 . repeat_region 1007 1048 . ? . description=trf scaffold_978 . biological_region 1245 1248 0.999 + . logic_name=eponine scaffold_978 . repeat_region 1308 7094 . ? . description=dust scaffold_978 . biological_region 7373 7374 0.999 - . logic_name=eponine scaffold_978 ensembl protein_coding_gene 20 1165 . - . ID=Phyra86651;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_978000001;logic_name=jgi_phyra1 scaffold_978 ensembl transcript 20 1165 . - . ID=Phyra86651;Parent=Phyra86651;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_978 . CDS 20 1165 . - 0 ID=Phyra86651;Parent=Phyra86651;rank=1 scaffold_978 . exon 20 1165 . - . ID=Phyra86651.1;Parent=Phyra86651;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1015 1 8200 scaffold_1015 . repeat_region 1476 7399 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_975 1 8203 scaffold_975 . biological_region 135 137 0.999 + . logic_name=eponine scaffold_975 . biological_region 1079 1081 0.999 - . logic_name=eponine scaffold_975 . repeat_region 1566 7181 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_974 1 8205 scaffold_974 . repeat_region 1226 7128 . ? . description=dust scaffold_974 ensembl protein_coding_gene 7 384 . + . ID=Phyra86650;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_974000001;logic_name=jgi_phyra1 scaffold_974 ensembl transcript 7 384 . + . ID=Phyra86650;Parent=Phyra86650;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_974 . CDS 7 384 . + 0 ID=Phyra86650;Parent=Phyra86650;rank=1 scaffold_974 . exon 7 384 . + . ID=Phyra86650.1;Parent=Phyra86650;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_973 1 8206 scaffold_973 . repeat_region 849 945 . ? . description=trf scaffold_973 . biological_region 871 874 0.999 - . logic_name=eponine scaffold_973 . biological_region 913 914 0.999 + . logic_name=eponine scaffold_973 . biological_region 938 946 0.999 - . logic_name=eponine scaffold_973 . biological_region 994 998 0.999 + . logic_name=eponine scaffold_973 . biological_region 1028 1030 0.999 - . logic_name=eponine scaffold_973 . biological_region 2377 2381 0.999 - . logic_name=eponine scaffold_973 . repeat_region 3418 7403 . ? . description=dust scaffold_973 . repeat_region 7425 8180 . + . description=GypsyPi-1c_I-int scaffold_973 . biological_region 7537 7542 0.999 - . logic_name=eponine scaffold_973 . biological_region 7574 7578 0.999 - . logic_name=eponine scaffold_973 ensembl protein_coding_gene 7720 8109 . + . ID=Phyra54888;biotype=protein_coding;external_name=gwEuk.973.1.1;logic_name=jgi_phyra1 scaffold_973 ensembl transcript 7720 8109 . + . ID=Phyra54888;Parent=Phyra54888;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_973 . CDS 7720 8109 . + 0 ID=Phyra54888;Parent=Phyra54888;rank=1 scaffold_973 . exon 7720 8109 . + . ID=Phyra54888.1;Parent=Phyra54888;constitutive=1;rank=1 scaffold_973 ensembl protein_coding_gene 1187 3054 . - . ID=Phyra86649;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_973000001;logic_name=jgi_phyra1 scaffold_973 ensembl transcript 1187 3054 . - . ID=Phyra86649;Parent=Phyra86649;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_973 . CDS 1187 2569 . - 0 ID=Phyra86649;Parent=Phyra86649;rank=2 scaffold_973 . exon 1187 2569 . - . ID=Phyra86649.2;Parent=Phyra86649;constitutive=1;rank=2 scaffold_973 . CDS 2617 3054 . - 0 ID=Phyra86649;Parent=Phyra86649;rank=1 scaffold_973 . exon 2617 3054 . - . ID=Phyra86649.1;Parent=Phyra86649;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_971 1 8211 scaffold_971 . repeat_region 1208 1228 . ? . description=trf scaffold_971 . repeat_region 1208 1228 . ? . description=dust scaffold_971 . repeat_region 1236 7381 . ? . description=dust scaffold_971 . repeat_region 7916 7929 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_969 1 8214 scaffold_969 . biological_region 108 112 0.999 + . logic_name=eponine scaffold_969 . repeat_region 1404 7241 . ? . description=dust scaffold_969 . biological_region 7673 7675 0.999 - . logic_name=eponine scaffold_969 . biological_region 7857 7860 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_967 1 8216 scaffold_967 . repeat_region 1031 6822 . ? . description=dust scaffold_967 ensembl protein_coding_gene 7055 7513 . + . ID=Phyra86646;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_967000001;logic_name=jgi_phyra1 scaffold_967 ensembl transcript 7055 7513 . + . ID=Phyra86646;Parent=Phyra86646;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_967 . CDS 7055 7098 . + 0 ID=Phyra86646;Parent=Phyra86646;rank=1 scaffold_967 . exon 7055 7098 . + . ID=Phyra86646.1;Parent=Phyra86646;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_967 . CDS 7146 7419 . + 0 ID=Phyra86646;Parent=Phyra86646;rank=2 scaffold_967 . exon 7146 7419 . + . ID=Phyra86646.2;Parent=Phyra86646;constitutive=1;ensembl_phase=2;rank=2 scaffold_967 . CDS 7490 7513 . + 0 ID=Phyra86646;Parent=Phyra86646;rank=3 scaffold_967 . exon 7490 7513 . + . ID=Phyra86646.3;Parent=Phyra86646;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_968 1 8216 scaffold_968 . biological_region 401 402 0.999 + . logic_name=eponine scaffold_968 . repeat_region 467 546 . ? . description=trf scaffold_968 . biological_region 662 668 0.999 + . logic_name=eponine scaffold_968 . biological_region 895 900 0.999 - . logic_name=eponine scaffold_968 . repeat_region 1328 6568 . ? . description=dust scaffold_968 . biological_region 7895 7897 0.999 - . logic_name=eponine scaffold_968 ensembl protein_coding_gene 144 1124 . + . ID=Phyra86647;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_968000001;logic_name=jgi_phyra1 scaffold_968 ensembl transcript 144 1124 . + . ID=Phyra86647;Parent=Phyra86647;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_968 . CDS 144 1124 . + 0 ID=Phyra86647;Parent=Phyra86647;rank=1 scaffold_968 . exon 144 1124 . + . ID=Phyra86647.1;Parent=Phyra86647;constitutive=1;rank=1 scaffold_968 ensembl protein_coding_gene 7169 8206 . - . ID=Phyra86648;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_968000002;logic_name=jgi_phyra1 scaffold_968 ensembl transcript 7169 8206 . - . ID=Phyra86648;Parent=Phyra86648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_968 . CDS 7169 8206 . - 0 ID=Phyra86648;Parent=Phyra86648;rank=1 scaffold_968 . exon 7169 8206 . - . ID=Phyra86648.1;Parent=Phyra86648;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_966 1 8217 scaffold_966 . repeat_region 1210 6354 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_989 1 8218 scaffold_989 . repeat_region 2459 7405 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_965 1 8219 scaffold_965 . repeat_region 1 357 . + . description=GypsyPi-1c_I-int scaffold_965 . repeat_region 1305 7317 . ? . description=dust scaffold_965 ensembl protein_coding_gene 7576 8143 . + . ID=Phyra86645;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_965000001;logic_name=jgi_phyra1 scaffold_965 ensembl transcript 7576 8143 . + . ID=Phyra86645;Parent=Phyra86645;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_965 . CDS 7576 8143 . + 0 ID=Phyra86645;Parent=Phyra86645;rank=1 scaffold_965 . exon 7576 8143 . + . ID=Phyra86645.1;Parent=Phyra86645;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_963 1 8221 scaffold_963 . repeat_region 1110 6531 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_962 1 8222 scaffold_962 . repeat_region 277 284 . ? . description=dust scaffold_962 . repeat_region 642 706 . ? . description=trf scaffold_962 . repeat_region 646 705 . ? . description=dust scaffold_962 . repeat_region 1500 7038 . ? . description=dust scaffold_962 . repeat_region 7596 7631 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_954 1 8226 scaffold_954 . repeat_region 924 6801 . ? . description=dust scaffold_954 . repeat_region 7027 7048 . ? . description=trf scaffold_954 . repeat_region 7027 7048 . ? . description=dust scaffold_954 . repeat_region 7657 8147 . - . description=Gypsy-1-I_PI-int ##gff-version 3 ##sequence-region scaffold_961 1 8227 scaffold_961 . repeat_region 853 895 . ? . description=trf scaffold_961 . repeat_region 988 7180 . ? . description=dust scaffold_961 . repeat_region 7451 7493 . ? . description=trf scaffold_961 . repeat_region 7733 7775 . ? . description=trf scaffold_961 ensembl protein_coding_gene 31 759 . - . ID=Phyra86643;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_961000001;logic_name=jgi_phyra1 scaffold_961 ensembl transcript 31 759 . - . ID=Phyra86643;Parent=Phyra86643;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_961 . CDS 31 759 . - 0 ID=Phyra86643;Parent=Phyra86643;rank=1 scaffold_961 . exon 31 759 . - . ID=Phyra86643.1;Parent=Phyra86643;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_960 1 8228 scaffold_960 . repeat_region 121 159 . ? . description=trf scaffold_960 . repeat_region 919 7007 . ? . description=dust scaffold_960 . repeat_region 7009 7830 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_958 1 8229 scaffold_958 . repeat_region 2 807 . - . description=GypsyPi-1c_I-int scaffold_958 . biological_region 1341 1342 0.999 - . logic_name=eponine scaffold_958 . biological_region 1380 1381 0.999 + . logic_name=eponine scaffold_958 . biological_region 1441 1448 0.999 - . logic_name=eponine scaffold_958 . repeat_region 1497 7087 . ? . description=dust scaffold_958 . repeat_region 7212 7221 . ? . description=dust scaffold_958 . repeat_region 8061 8099 . ? . description=trf scaffold_958 ensembl protein_coding_gene 140 418 . - . ID=Phyra54783;biotype=protein_coding;external_name=gwEuk.958.1.1;logic_name=jgi_phyra1 scaffold_958 ensembl transcript 140 418 . - . ID=Phyra54783;Parent=Phyra54783;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_958 . CDS 140 418 . - 0 ID=Phyra54783;Parent=Phyra54783;rank=1 scaffold_958 . exon 140 418 . - . ID=Phyra54783.1;Parent=Phyra54783;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_959 1 8233 scaffold_959 . repeat_region 1290 1967 . ? . description=dust scaffold_959 . repeat_region 2110 2151 . ? . description=trf scaffold_959 . biological_region 2733 2735 0.999 + . logic_name=eponine scaffold_959 . repeat_region 3587 6740 . ? . description=dust scaffold_959 . repeat_region 8015 8057 . ? . description=trf scaffold_959 . repeat_region 8154 8202 . ? . description=trf scaffold_959 ensembl protein_coding_gene 3312 3533 . + . ID=Phyra54787;biotype=protein_coding;external_name=gwEuk.959.2.1;logic_name=jgi_phyra1 scaffold_959 ensembl transcript 3312 3533 . + . ID=Phyra54787;Parent=Phyra54787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_959 . CDS 3312 3533 . + 0 ID=Phyra54787;Parent=Phyra54787;rank=1 scaffold_959 . exon 3312 3533 . + . ID=Phyra54787.1;Parent=Phyra54787;constitutive=1;rank=1 scaffold_959 ensembl protein_coding_gene 644 1189 . + . ID=Phyra54801;biotype=protein_coding;external_name=gwEuk.959.16.1;logic_name=jgi_phyra1 scaffold_959 ensembl transcript 644 1189 . + . ID=Phyra54801;Parent=Phyra54801;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_959 . CDS 644 1189 . + 0 ID=Phyra54801;Parent=Phyra54801;rank=1 scaffold_959 . exon 644 1189 . + . ID=Phyra54801.1;Parent=Phyra54801;constitutive=1;rank=1 scaffold_959 ensembl protein_coding_gene 6813 7964 . + . ID=Phyra72445;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_959000002;logic_name=jgi_phyra1 scaffold_959 ensembl transcript 6813 7964 . + . ID=Phyra72445;Parent=Phyra72445;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_959 . CDS 6813 7964 . + 0 ID=Phyra72445;Parent=Phyra72445;rank=1 scaffold_959 . exon 6813 7964 . + . ID=Phyra72445.1;Parent=Phyra72445;constitutive=1;rank=1 scaffold_959 ensembl protein_coding_gene 2253 3301 . + . ID=Phyra86641;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_959000002;logic_name=jgi_phyra1 scaffold_959 ensembl transcript 2253 3301 . + . ID=Phyra86641;Parent=Phyra86641;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_959 . CDS 2253 2602 . + 0 ID=Phyra86641;Parent=Phyra86641;rank=1 scaffold_959 . exon 2253 2602 . + . ID=Phyra86641.1;Parent=Phyra86641;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_959 . CDS 2669 3121 . + 0 ID=Phyra86641;Parent=Phyra86641;rank=2 scaffold_959 . exon 2669 3121 . + . ID=Phyra86641.2;Parent=Phyra86641;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_959 . CDS 3217 3301 . + 0 ID=Phyra86641;Parent=Phyra86641;rank=3 scaffold_959 . exon 3217 3301 . + . ID=Phyra86641.3;Parent=Phyra86641;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_953 1 8234 scaffold_953 . repeat_region 949 6450 . ? . description=dust scaffold_953 . biological_region 7099 7103 0.999 - . logic_name=eponine scaffold_953 ensembl protein_coding_gene 14 573 . - . ID=Phyra86638;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_953000001;logic_name=jgi_phyra1 scaffold_953 ensembl transcript 14 573 . - . ID=Phyra86638;Parent=Phyra86638;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_953 . CDS 14 573 . - 0 ID=Phyra86638;Parent=Phyra86638;rank=1 scaffold_953 . exon 14 573 . - . ID=Phyra86638.1;Parent=Phyra86638;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_980 1 8234 scaffold_980 . repeat_region 1 331 . ? . description=trf scaffold_980 . biological_region 541 543 0.999 - . logic_name=eponine scaffold_980 . repeat_region 1182 7216 . ? . description=dust scaffold_980 . repeat_region 7219 7293 . ? . description=trf scaffold_980 . repeat_region 7294 7422 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_952 1 8235 scaffold_952 . repeat_region 518 532 . ? . description=dust scaffold_952 . repeat_region 838 851 . ? . description=dust scaffold_952 . repeat_region 887 894 . ? . description=dust scaffold_952 . repeat_region 1267 7069 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_951 1 8237 scaffold_951 . biological_region 378 380 0.999 + . logic_name=eponine scaffold_951 . biological_region 563 565 0.999 + . logic_name=eponine scaffold_951 . repeat_region 1452 6936 . ? . description=dust scaffold_951 . biological_region 8121 8121 0.999 + . logic_name=eponine scaffold_951 ensembl protein_coding_gene 25 1040 . - . ID=Phyra86637;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_951000001;logic_name=jgi_phyra1 scaffold_951 ensembl transcript 25 1040 . - . ID=Phyra86637;Parent=Phyra86637;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_951 . CDS 25 64 . - 0 ID=Phyra86637;Parent=Phyra86637;rank=3 scaffold_951 . exon 25 64 . - . ID=Phyra86637.3;Parent=Phyra86637;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_951 . CDS 89 106 . - 0 ID=Phyra86637;Parent=Phyra86637;rank=2 scaffold_951 . exon 89 106 . - . ID=Phyra86637.2;Parent=Phyra86637;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_951 . CDS 161 1040 . - 0 ID=Phyra86637;Parent=Phyra86637;rank=1 scaffold_951 . exon 161 1040 . - . ID=Phyra86637.1;Parent=Phyra86637;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_949 1 8238 scaffold_949 . repeat_region 917 7073 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_950 1 8238 scaffold_950 . repeat_region 327 994 . - . description=Gypsy-1-I_PI-int scaffold_950 . repeat_region 1935 7461 . ? . description=dust scaffold_950 . repeat_region 7939 7954 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_820 1 8239 scaffold_820 . repeat_region 1287 3602 . ? . description=dust scaffold_820 . repeat_region 4523 4547 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_948 1 8241 scaffold_948 . repeat_region 630 672 . ? . description=trf scaffold_948 . repeat_region 999 7007 . ? . description=dust scaffold_948 . repeat_region 7466 7508 . ? . description=trf scaffold_948 . repeat_region 8190 8231 . ? . description=trf scaffold_948 ensembl protein_coding_gene 798 998 . - . ID=Phyra54763;biotype=protein_coding;external_name=gwEuk.948.1.1;logic_name=jgi_phyra1 scaffold_948 ensembl transcript 798 998 . - . ID=Phyra54763;Parent=Phyra54763;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_948 . CDS 798 998 . - 0 ID=Phyra54763;Parent=Phyra54763;rank=1 scaffold_948 . exon 798 998 . - . ID=Phyra54763.1;Parent=Phyra54763;constitutive=1;rank=1 scaffold_948 ensembl protein_coding_gene 4 347 . - . ID=Phyra86635;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_948000001;logic_name=jgi_phyra1 scaffold_948 ensembl transcript 4 347 . - . ID=Phyra86635;Parent=Phyra86635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_948 . CDS 4 347 . - 0 ID=Phyra86635;Parent=Phyra86635;rank=1 scaffold_948 . exon 4 347 . - . ID=Phyra86635.1;Parent=Phyra86635;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_948 ensembl protein_coding_gene 7546 7896 . - . ID=Phyra86636;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_948000002;logic_name=jgi_phyra1 scaffold_948 ensembl transcript 7546 7896 . - . ID=Phyra86636;Parent=Phyra86636;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_948 . CDS 7546 7558 . - 0 ID=Phyra86636;Parent=Phyra86636;rank=2 scaffold_948 . exon 7546 7558 . - . ID=Phyra86636.2;Parent=Phyra86636;constitutive=1;ensembl_phase=2;rank=2 scaffold_948 . CDS 7607 7896 . - 0 ID=Phyra86636;Parent=Phyra86636;rank=1 scaffold_948 . exon 7607 7896 . - . ID=Phyra86636.1;Parent=Phyra86636;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_947 1 8242 scaffold_947 . repeat_region 1205 6811 . ? . description=dust scaffold_947 . repeat_region 6822 7950 . + . description=GypsyPi-1c_I-int scaffold_947 . biological_region 6886 6888 0.999 - . logic_name=eponine scaffold_947 . biological_region 6924 6925 0.999 - . logic_name=eponine scaffold_947 ensembl protein_coding_gene 7074 8196 . + . ID=Phyra86634;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_947000001;logic_name=jgi_phyra1 scaffold_947 ensembl transcript 7074 8196 . + . ID=Phyra86634;Parent=Phyra86634;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_947 . CDS 7074 8196 . + 0 ID=Phyra86634;Parent=Phyra86634;rank=1 scaffold_947 . exon 7074 8196 . + . ID=Phyra86634.1;Parent=Phyra86634;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1055 1 8243 scaffold_1055 . repeat_region 1279 7256 . ? . description=dust scaffold_1055 . repeat_region 7326 7457 . ? . description=dust scaffold_1055 . repeat_region 7328 7457 . ? . description=trf scaffold_1055 . repeat_region 7528 7585 . ? . description=trf scaffold_1055 . repeat_region 7528 7585 . ? . description=trf scaffold_1055 ensembl protein_coding_gene 18 1091 . + . ID=Phyra86691;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1055000001;logic_name=jgi_phyra1 scaffold_1055 ensembl transcript 18 1091 . + . ID=Phyra86691;Parent=Phyra86691;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1055 . CDS 18 1091 . + 0 ID=Phyra86691;Parent=Phyra86691;rank=1 scaffold_1055 . exon 18 1091 . + . ID=Phyra86691.1;Parent=Phyra86691;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_946 1 8244 scaffold_946 . repeat_region 287 322 . ? . description=trf scaffold_946 . repeat_region 773 6856 . ? . description=dust scaffold_946 . repeat_region 7377 7422 . ? . description=trf scaffold_946 . repeat_region 7454 7572 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_945 1 8248 scaffold_945 . biological_region 351 354 0.999 - . logic_name=eponine scaffold_945 . biological_region 473 475 0.999 - . logic_name=eponine scaffold_945 . repeat_region 1398 7443 . ? . description=dust scaffold_945 ensembl protein_coding_gene 143 1192 . + . ID=Phyra72442;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_945000001;logic_name=jgi_phyra1 scaffold_945 ensembl transcript 143 1192 . + . ID=Phyra72442;Parent=Phyra72442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_945 . CDS 143 687 . + 0 ID=Phyra72442;Parent=Phyra72442;rank=1 scaffold_945 . exon 143 687 . + . ID=Phyra72442.1;Parent=Phyra72442;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_945 . CDS 766 1192 . + 0 ID=Phyra72442;Parent=Phyra72442;rank=2 scaffold_945 . exon 766 1192 . + . ID=Phyra72442.2;Parent=Phyra72442;constitutive=1;ensembl_phase=2;rank=2 scaffold_945 ensembl protein_coding_gene 7614 7961 . + . ID=Phyra72443;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_945000002;logic_name=jgi_phyra1 scaffold_945 ensembl transcript 7614 7961 . + . ID=Phyra72443;Parent=Phyra72443;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_945 . CDS 7614 7961 . + 0 ID=Phyra72443;Parent=Phyra72443;rank=1 scaffold_945 . exon 7614 7961 . + . ID=Phyra72443.1;Parent=Phyra72443;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_944 1 8251 scaffold_944 . repeat_region 1019 7224 . ? . description=dust scaffold_944 . biological_region 7527 7528 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_943 1 8252 scaffold_943 . repeat_region 1251 7045 . ? . description=dust scaffold_943 ensembl protein_coding_gene 385 702 . - . ID=Phyra86631;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_943000001;logic_name=jgi_phyra1 scaffold_943 ensembl transcript 385 702 . - . ID=Phyra86631;Parent=Phyra86631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_943 . CDS 385 702 . - 0 ID=Phyra86631;Parent=Phyra86631;rank=1 scaffold_943 . exon 385 702 . - . ID=Phyra86631.1;Parent=Phyra86631;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_942 1 8256 scaffold_942 . repeat_region 1857 7416 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_941 1 8257 scaffold_941 . repeat_region 1159 6391 . ? . description=dust scaffold_941 ensembl protein_coding_gene 7471 7647 . + . ID=Phyra54751;biotype=protein_coding;external_name=gwEuk.941.1.1;logic_name=jgi_phyra1 scaffold_941 ensembl transcript 7471 7647 . + . ID=Phyra54751;Parent=Phyra54751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_941 . CDS 7471 7647 . + 0 ID=Phyra54751;Parent=Phyra54751;rank=1 scaffold_941 . exon 7471 7647 . + . ID=Phyra54751.1;Parent=Phyra54751;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_940 1 8258 scaffold_940 . repeat_region 949 6722 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_930 1 8260 scaffold_930 . repeat_region 1135 6927 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_936 1 8260 scaffold_936 . repeat_region 806 4765 . ? . description=dust scaffold_936 . biological_region 5473 5476 0.999 + . logic_name=eponine scaffold_936 . biological_region 5522 5529 0.999 + . logic_name=eponine scaffold_936 . biological_region 5587 5593 0.999 - . logic_name=eponine scaffold_936 . biological_region 5626 5630 0.999 + . logic_name=eponine scaffold_936 . repeat_region 5995 6919 . ? . description=dust scaffold_936 . repeat_region 6928 7787 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_939 1 8260 scaffold_939 . biological_region 204 208 0.999 + . logic_name=eponine scaffold_939 . repeat_region 401 577 . ? . description=trf scaffold_939 . repeat_region 1133 7220 . ? . description=dust scaffold_939 . repeat_region 7740 7769 . ? . description=dust scaffold_939 . repeat_region 7875 7892 . ? . description=dust scaffold_939 ensembl protein_coding_gene 233 757 . - . ID=Phyra86630;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_939000001;logic_name=jgi_phyra1 scaffold_939 ensembl transcript 233 757 . - . ID=Phyra86630;Parent=Phyra86630;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_939 . CDS 233 398 . - 0 ID=Phyra86630;Parent=Phyra86630;rank=3 scaffold_939 . exon 233 398 . - . ID=Phyra86630.3;Parent=Phyra86630;constitutive=1;ensembl_phase=2;rank=3 scaffold_939 . CDS 454 481 . - 0 ID=Phyra86630;Parent=Phyra86630;rank=2 scaffold_939 . exon 454 481 . - . ID=Phyra86630.2;Parent=Phyra86630;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_939 . CDS 523 757 . - 0 ID=Phyra86630;Parent=Phyra86630;rank=1 scaffold_939 . exon 523 757 . - . ID=Phyra86630.1;Parent=Phyra86630;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_937 1 8261 scaffold_937 . biological_region 154 160 0.999 - . logic_name=eponine scaffold_937 . repeat_region 840 3283 . ? . description=dust scaffold_937 . repeat_region 5013 6190 . ? . description=dust scaffold_937 ensembl protein_coding_gene 6429 7064 . - . ID=Phyra72441;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_937000001;logic_name=jgi_phyra1 scaffold_937 ensembl transcript 6429 7064 . - . ID=Phyra72441;Parent=Phyra72441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_937 . CDS 6429 7064 . - 0 ID=Phyra72441;Parent=Phyra72441;rank=1 scaffold_937 . exon 6429 7064 . - . ID=Phyra72441.1;Parent=Phyra72441;constitutive=1;rank=1 scaffold_937 ensembl protein_coding_gene 7226 8261 . - . ID=Phyra86628;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_937000002;logic_name=jgi_phyra1 scaffold_937 ensembl transcript 7226 8261 . - . ID=Phyra86628;Parent=Phyra86628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_937 . CDS 7226 8260 . - 0 ID=Phyra86628;Parent=Phyra86628;rank=1 scaffold_937 . exon 7226 8261 . - . ID=Phyra86628.1;Parent=Phyra86628;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_938 1 8261 scaffold_938 . repeat_region 211 236 . ? . description=dust scaffold_938 . repeat_region 217 236 . ? . description=trf scaffold_938 . repeat_region 1284 6988 . ? . description=dust scaffold_938 ensembl protein_coding_gene 7856 8232 . + . ID=Phyra54708;biotype=protein_coding;external_name=gwEuk.938.2.1;logic_name=jgi_phyra1 scaffold_938 ensembl transcript 7856 8232 . + . ID=Phyra54708;Parent=Phyra54708;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_938 . CDS 7856 8057 . + 0 ID=Phyra54708;Parent=Phyra54708;rank=1 scaffold_938 . exon 7856 8057 . + . ID=Phyra54708.1;Parent=Phyra54708;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_938 . CDS 8138 8232 . + 0 ID=Phyra54708;Parent=Phyra54708;rank=2 scaffold_938 . exon 8138 8232 . + . ID=Phyra54708.2;Parent=Phyra54708;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_934 1 8264 scaffold_934 . repeat_region 1602 7189 . ? . description=dust scaffold_934 . repeat_region 7838 7920 . ? . description=trf scaffold_934 ensembl pseudogene 7436 7829 . + . ID=Phyra54706;biotype=pseudogene;external_name=gwEuk.934.1.1;logic_name=jgi_phyra1 scaffold_934 ensembl pseudogene 7436 7829 . + . ID=Phyra54706;Parent=Phyra54706;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_934 . exon 7436 7829 . + . ID=Phyra54706.1;Parent=Phyra54706;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_990 1 8264 scaffold_990 . repeat_region 1321 2146 . ? . description=dust scaffold_990 . repeat_region 2254 2274 . ? . description=trf scaffold_990 . repeat_region 3317 3366 . ? . description=dust scaffold_990 . repeat_region 3962 3982 . ? . description=trf scaffold_990 . biological_region 4360 4362 0.999 - . logic_name=eponine scaffold_990 . repeat_region 4713 5837 . ? . description=dust scaffold_990 ensembl protein_coding_gene 374 691 . + . ID=Phyra86660;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_990000001;logic_name=jgi_phyra1 scaffold_990 ensembl transcript 374 691 . + . ID=Phyra86660;Parent=Phyra86660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_990 . CDS 374 691 . + 0 ID=Phyra86660;Parent=Phyra86660;rank=1 scaffold_990 . exon 374 691 . + . ID=Phyra86660.1;Parent=Phyra86660;constitutive=1;rank=1 scaffold_990 ensembl protein_coding_gene 4003 8260 . + . ID=Phyra86661;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_990000002;logic_name=jgi_phyra1 scaffold_990 ensembl transcript 4003 8260 . + . ID=Phyra86661;Parent=Phyra86661;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_990 . CDS 4003 4705 . + 0 ID=Phyra86661;Parent=Phyra86661;rank=1 scaffold_990 . exon 4003 4705 . + . ID=Phyra86661.1;Parent=Phyra86661;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_990 . CDS 5922 6077 . + 0 ID=Phyra86661;Parent=Phyra86661;rank=2 scaffold_990 . exon 5922 6077 . + . ID=Phyra86661.2;Parent=Phyra86661;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_990 . CDS 6234 8260 . + 0 ID=Phyra86661;Parent=Phyra86661;rank=3 scaffold_990 . exon 6234 8260 . + . ID=Phyra86661.3;Parent=Phyra86661;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_932 1 8265 scaffold_932 . repeat_region 1744 7293 . ? . description=dust scaffold_932 ensembl protein_coding_gene 580 1577 . - . ID=Phyra86622;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_932000001;logic_name=jgi_phyra1 scaffold_932 ensembl transcript 580 1577 . - . ID=Phyra86622;Parent=Phyra86622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_932 . CDS 580 987 . - 0 ID=Phyra86622;Parent=Phyra86622;rank=3 scaffold_932 . exon 580 987 . - . ID=Phyra86622.3;Parent=Phyra86622;constitutive=1;rank=3 scaffold_932 . CDS 1107 1371 . - 0 ID=Phyra86622;Parent=Phyra86622;rank=2 scaffold_932 . exon 1107 1371 . - . ID=Phyra86622.2;Parent=Phyra86622;constitutive=1;ensembl_phase=2;rank=2 scaffold_932 . CDS 1432 1577 . - 0 ID=Phyra86622;Parent=Phyra86622;rank=1 scaffold_932 . exon 1432 1577 . - . ID=Phyra86622.1;Parent=Phyra86622;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_924 1 8269 scaffold_924 . repeat_region 1217 7196 . ? . description=dust scaffold_924 . biological_region 7745 7749 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_929 1 8270 scaffold_929 . repeat_region 1095 6861 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_927 1 8271 scaffold_927 . repeat_region 786 6743 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_928 1 8271 scaffold_928 . biological_region 1153 1156 0.999 - . logic_name=eponine scaffold_928 . repeat_region 1216 7121 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_926 1 8272 scaffold_926 . repeat_region 977 1033 . ? . description=trf scaffold_926 . repeat_region 1415 2566 . ? . description=dust scaffold_926 . repeat_region 3423 3430 . ? . description=dust scaffold_926 . repeat_region 4071 6257 . ? . description=dust scaffold_926 . biological_region 7620 7623 0.999 - . logic_name=eponine scaffold_926 . biological_region 7655 7655 0.999 + . logic_name=eponine scaffold_926 . biological_region 7792 7794 0.999 + . logic_name=eponine scaffold_926 . biological_region 7904 7911 0.999 - . logic_name=eponine scaffold_926 . biological_region 7956 7958 0.999 - . logic_name=eponine scaffold_926 ensembl protein_coding_gene 6301 8073 . - . ID=Phyra86621;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_926000001;logic_name=jgi_phyra1 scaffold_926 ensembl transcript 6301 8073 . - . ID=Phyra86621;Parent=Phyra86621;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_926 . CDS 6301 8073 . - 0 ID=Phyra86621;Parent=Phyra86621;rank=1 scaffold_926 . exon 6301 8073 . - . ID=Phyra86621.1;Parent=Phyra86621;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_983 1 8272 scaffold_983 . repeat_region 161 308 . ? . description=trf scaffold_983 . repeat_region 1261 6930 . ? . description=dust scaffold_983 . repeat_region 7247 7254 . ? . description=dust scaffold_983 . repeat_region 7592 7605 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_922 1 8279 scaffold_922 . repeat_region 3369 6543 . ? . description=dust scaffold_922 ensembl protein_coding_gene 87 1625 . - . ID=Phyra86619;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_922000001;logic_name=jgi_phyra1 scaffold_922 ensembl transcript 87 1625 . - . ID=Phyra86619;Parent=Phyra86619;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_922 . CDS 87 1625 . - 0 ID=Phyra86619;Parent=Phyra86619;rank=1 scaffold_922 . exon 87 1625 . - . ID=Phyra86619.1;Parent=Phyra86619;constitutive=1;rank=1 scaffold_922 ensembl protein_coding_gene 6837 8276 . + . ID=Phyra86620;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_922000002;logic_name=jgi_phyra1 scaffold_922 ensembl transcript 6837 8276 . + . ID=Phyra86620;Parent=Phyra86620;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_922 . CDS 6837 8276 . + 0 ID=Phyra86620;Parent=Phyra86620;rank=1 scaffold_922 . exon 6837 8276 . + . ID=Phyra86620.1;Parent=Phyra86620;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_957 1 8286 scaffold_957 . repeat_region 371 407 . ? . description=trf scaffold_957 . repeat_region 909 6781 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_921 1 8287 scaffold_921 . repeat_region 1292 6270 . ? . description=dust scaffold_921 ensembl protein_coding_gene 6424 7806 . + . ID=Phyra86618;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_921000001;logic_name=jgi_phyra1 scaffold_921 ensembl transcript 6424 7806 . + . ID=Phyra86618;Parent=Phyra86618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_921 . CDS 6424 7806 . + 0 ID=Phyra86618;Parent=Phyra86618;rank=1 scaffold_921 . exon 6424 7806 . + . ID=Phyra86618.1;Parent=Phyra86618;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_919 1 8288 scaffold_919 . repeat_region 1410 4680 . ? . description=dust scaffold_919 . repeat_region 5902 6741 . ? . description=dust scaffold_919 ensembl protein_coding_gene 29 484 . + . ID=Phyra86616;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_919000001;logic_name=jgi_phyra1 scaffold_919 ensembl transcript 29 484 . + . ID=Phyra86616;Parent=Phyra86616;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_919 . CDS 29 484 . + 0 ID=Phyra86616;Parent=Phyra86616;rank=1 scaffold_919 . exon 29 484 . + . ID=Phyra86616.1;Parent=Phyra86616;constitutive=1;rank=1 scaffold_919 ensembl protein_coding_gene 7288 8013 . + . ID=Phyra86617;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_919000002;logic_name=jgi_phyra1 scaffold_919 ensembl transcript 7288 8013 . + . ID=Phyra86617;Parent=Phyra86617;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_919 . CDS 7288 8013 . + 0 ID=Phyra86617;Parent=Phyra86617;rank=1 scaffold_919 . exon 7288 8013 . + . ID=Phyra86617.1;Parent=Phyra86617;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_917 1 8290 scaffold_917 . biological_region 616 617 0.999 + . logic_name=eponine scaffold_917 . repeat_region 885 961 . ? . description=trf scaffold_917 . repeat_region 946 1024 . ? . description=trf scaffold_917 . repeat_region 1009 1067 . ? . description=trf scaffold_917 . repeat_region 1364 1417 . ? . description=trf scaffold_917 . biological_region 1599 1599 0.999 + . logic_name=eponine scaffold_917 . repeat_region 1711 7313 . ? . description=dust scaffold_917 . biological_region 7572 7576 0.999 + . logic_name=eponine scaffold_917 . biological_region 8035 8038 0.999 - . logic_name=eponine scaffold_917 ensembl protein_coding_gene 609 1673 . + . ID=Phyra86615;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_917000001;logic_name=jgi_phyra1 scaffold_917 ensembl transcript 609 1673 . + . ID=Phyra86615;Parent=Phyra86615;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_917 . CDS 609 1673 . + 0 ID=Phyra86615;Parent=Phyra86615;rank=1 scaffold_917 . exon 609 1673 . + . ID=Phyra86615.1;Parent=Phyra86615;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1053 1 8292 scaffold_1053 . repeat_region 97 203 . ? . description=trf scaffold_1053 . repeat_region 97 216 . ? . description=dust scaffold_1053 . repeat_region 962 6856 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_914 1 8293 scaffold_914 . repeat_region 1356 7012 . ? . description=dust scaffold_914 . repeat_region 7403 7411 . ? . description=dust scaffold_914 . repeat_region 7994 8002 . ? . description=dust scaffold_914 ensembl protein_coding_gene 1 1353 . + . ID=Phyra86614;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_914000001;logic_name=jgi_phyra1 scaffold_914 ensembl transcript 1 1353 . + . ID=Phyra86614;Parent=Phyra86614;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_914 . exon 1 1278 . + . ID=Phyra86614.1;Parent=Phyra86614;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_914 . CDS 3 1278 . + 0 ID=Phyra86614;Parent=Phyra86614;rank=1 scaffold_914 . CDS 1343 1353 . + 0 ID=Phyra86614;Parent=Phyra86614;rank=2 scaffold_914 . exon 1343 1353 . + . ID=Phyra86614.2;Parent=Phyra86614;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_915 1 8293 scaffold_915 . repeat_region 1631 7136 . ? . description=dust scaffold_915 . repeat_region 7414 7507 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_916 1 8293 scaffold_916 . repeat_region 206 213 . ? . description=dust scaffold_916 . repeat_region 1013 7252 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_913 1 8294 scaffold_913 . repeat_region 245 296 . ? . description=dust scaffold_913 . repeat_region 357 396 . ? . description=trf scaffold_913 . repeat_region 421 482 . ? . description=dust scaffold_913 . biological_region 456 457 0.999 + . logic_name=eponine scaffold_913 . repeat_region 1763 2382 . ? . description=dust scaffold_913 . repeat_region 3748 6457 . ? . description=dust scaffold_913 ensembl protein_coding_gene 472 1071 . + . ID=Phyra86612;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_913000001;logic_name=jgi_phyra1 scaffold_913 ensembl transcript 472 1071 . + . ID=Phyra86612;Parent=Phyra86612;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_913 . CDS 472 1071 . + 0 ID=Phyra86612;Parent=Phyra86612;rank=1 scaffold_913 . exon 472 1071 . + . ID=Phyra86612.1;Parent=Phyra86612;constitutive=1;rank=1 scaffold_913 ensembl protein_coding_gene 2548 3516 . + . ID=Phyra86613;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_913000002;logic_name=jgi_phyra1 scaffold_913 ensembl transcript 2548 3516 . + . ID=Phyra86613;Parent=Phyra86613;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_913 . CDS 2548 3516 . + 0 ID=Phyra86613;Parent=Phyra86613;rank=1 scaffold_913 . exon 2548 3516 . + . ID=Phyra86613.1;Parent=Phyra86613;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_920 1 8294 scaffold_920 . repeat_region 81 360 . ? . description=trf scaffold_920 . repeat_region 128 401 . ? . description=trf scaffold_920 . repeat_region 792 6581 . ? . description=dust scaffold_920 . repeat_region 8119 8126 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_910 1 8295 scaffold_910 . repeat_region 1195 6485 . ? . description=dust scaffold_910 . repeat_region 6897 6940 . ? . description=trf scaffold_910 . repeat_region 8099 8284 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_912 1 8295 scaffold_912 . repeat_region 53 74 . ? . description=dust scaffold_912 . biological_region 801 803 0.999 - . logic_name=eponine scaffold_912 . biological_region 853 860 0.999 + . logic_name=eponine scaffold_912 . biological_region 948 951 0.999 + . logic_name=eponine scaffold_912 . repeat_region 1666 7307 . ? . description=dust scaffold_912 ensembl protein_coding_gene 253 1425 . - . ID=Phyra86611;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_912000001;logic_name=jgi_phyra1 scaffold_912 ensembl transcript 253 1425 . - . ID=Phyra86611;Parent=Phyra86611;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_912 . CDS 253 450 . - 0 ID=Phyra86611;Parent=Phyra86611;rank=3 scaffold_912 . exon 253 450 . - . ID=Phyra86611.3;Parent=Phyra86611;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_912 . CDS 547 1350 . - 0 ID=Phyra86611;Parent=Phyra86611;rank=2 scaffold_912 . exon 547 1350 . - . ID=Phyra86611.2;Parent=Phyra86611;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_912 . CDS 1371 1425 . - 0 ID=Phyra86611;Parent=Phyra86611;rank=1 scaffold_912 . exon 1371 1425 . - . ID=Phyra86611.1;Parent=Phyra86611;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_908 1 8296 scaffold_908 . repeat_region 15 990 . + . description=Polinton-1_PI scaffold_908 . repeat_region 1046 1053 . ? . description=dust scaffold_908 . repeat_region 1551 7368 . ? . description=dust scaffold_908 . repeat_region 7735 7891 . + . description=Polinton-1_PI scaffold_908 . repeat_region 8071 8295 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_909 1 8296 scaffold_909 . repeat_region 1455 6797 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_907 1 8297 scaffold_907 . repeat_region 1210 7157 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_899 1 8299 scaffold_899 . repeat_region 4960 7178 . ? . description=dust scaffold_899 ensembl protein_coding_gene 3726 4634 . - . ID=Phyra54175;biotype=protein_coding;external_name=gwEuk.899.5.1;logic_name=jgi_phyra1 scaffold_899 ensembl transcript 3726 4634 . - . ID=Phyra54175;Parent=Phyra54175;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_899 . CDS 3726 4634 . - 0 ID=Phyra54175;Parent=Phyra54175;rank=1 scaffold_899 . exon 3726 4634 . - . ID=Phyra54175.1;Parent=Phyra54175;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_905 1 8300 scaffold_905 . repeat_region 1097 7075 . ? . description=dust scaffold_905 . repeat_region 7919 7939 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_911 1 8300 scaffold_911 . repeat_region 2015 7369 . ? . description=dust scaffold_911 . repeat_region 7423 7466 . ? . description=trf scaffold_911 ensembl protein_coding_gene 14 1984 . + . ID=Phyra86609;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_911000001;logic_name=jgi_phyra1 scaffold_911 ensembl transcript 14 1984 . + . ID=Phyra86609;Parent=Phyra86609;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_911 . CDS 14 766 . + 0 ID=Phyra86609;Parent=Phyra86609;rank=1 scaffold_911 . exon 14 766 . + . ID=Phyra86609.1;Parent=Phyra86609;constitutive=1;rank=1 scaffold_911 . CDS 799 1918 . + 0 ID=Phyra86609;Parent=Phyra86609;rank=2 scaffold_911 . exon 799 1918 . + . ID=Phyra86609.2;Parent=Phyra86609;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_911 . CDS 1953 1984 . + 0 ID=Phyra86609;Parent=Phyra86609;rank=3 scaffold_911 . exon 1953 1984 . + . ID=Phyra86609.3;Parent=Phyra86609;constitutive=1;ensembl_phase=1;rank=3 scaffold_911 ensembl protein_coding_gene 7453 8041 . + . ID=Phyra86610;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_911000002;logic_name=jgi_phyra1 scaffold_911 ensembl transcript 7453 8041 . + . ID=Phyra86610;Parent=Phyra86610;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_911 . CDS 7453 7933 . + 0 ID=Phyra86610;Parent=Phyra86610;rank=1 scaffold_911 . exon 7453 7933 . + . ID=Phyra86610.1;Parent=Phyra86610;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_911 . CDS 8031 8041 . + 0 ID=Phyra86610;Parent=Phyra86610;rank=2 scaffold_911 . exon 8031 8041 . + . ID=Phyra86610.2;Parent=Phyra86610;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_906 1 8301 scaffold_906 . repeat_region 1 19 . ? . description=dust scaffold_906 . repeat_region 93 105 . ? . description=dust scaffold_906 . repeat_region 1200 6680 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_935 1 8302 scaffold_935 . biological_region 425 431 0.999 - . logic_name=eponine scaffold_935 . biological_region 480 483 0.999 - . logic_name=eponine scaffold_935 . biological_region 519 521 0.999 - . logic_name=eponine scaffold_935 . biological_region 533 539 0.999 + . logic_name=eponine scaffold_935 . repeat_region 920 4670 . ? . description=dust scaffold_935 . repeat_region 5061 5940 . + . description=Gypsy-1-I_PI-int scaffold_935 . repeat_region 5973 6962 . ? . description=dust scaffold_935 . repeat_region 6977 8151 . + . description=Gypsy-1-I_PI-int scaffold_935 ensembl protein_coding_gene 46 642 . - . ID=Phyra86626;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_935000001;logic_name=jgi_phyra1 scaffold_935 ensembl transcript 46 642 . - . ID=Phyra86626;Parent=Phyra86626;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_935 . CDS 46 642 . - 0 ID=Phyra86626;Parent=Phyra86626;rank=1 scaffold_935 . exon 46 642 . - . ID=Phyra86626.1;Parent=Phyra86626;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_904 1 8303 scaffold_904 . repeat_region 1349 7050 . ? . description=dust scaffold_904 . repeat_region 7362 7369 . ? . description=dust scaffold_904 . biological_region 8167 8169 0.999 + . logic_name=eponine scaffold_904 ensembl protein_coding_gene 23 765 . + . ID=Phyra86608;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_904000001;logic_name=jgi_phyra1 scaffold_904 ensembl transcript 23 765 . + . ID=Phyra86608;Parent=Phyra86608;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_904 . CDS 23 466 . + 0 ID=Phyra86608;Parent=Phyra86608;rank=1 scaffold_904 . exon 23 466 . + . ID=Phyra86608.1;Parent=Phyra86608;constitutive=1;rank=1 scaffold_904 . CDS 637 765 . + 0 ID=Phyra86608;Parent=Phyra86608;rank=2 scaffold_904 . exon 637 765 . + . ID=Phyra86608.2;Parent=Phyra86608;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_902 1 8309 scaffold_902 . repeat_region 161 201 . ? . description=trf scaffold_902 . repeat_region 756 841 . + . description=GypsyPi-1c_LTR scaffold_902 . repeat_region 854 6509 . ? . description=dust scaffold_902 . repeat_region 6783 8103 . - . description=GypsyPi-1c_I-int scaffold_902 ensembl protein_coding_gene 7053 8298 . - . ID=Phyra86606;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_902000001;logic_name=jgi_phyra1 scaffold_902 ensembl transcript 7053 8298 . - . ID=Phyra86606;Parent=Phyra86606;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_902 . CDS 7053 7091 . - 0 ID=Phyra86606;Parent=Phyra86606;rank=3 scaffold_902 . exon 7053 7091 . - . ID=Phyra86606.3;Parent=Phyra86606;constitutive=1;rank=3 scaffold_902 . CDS 7150 7359 . - 0 ID=Phyra86606;Parent=Phyra86606;rank=2 scaffold_902 . exon 7150 7359 . - . ID=Phyra86606.2;Parent=Phyra86606;constitutive=1;rank=2 scaffold_902 . CDS 7402 8298 . - 0 ID=Phyra86606;Parent=Phyra86606;rank=1 scaffold_902 . exon 7402 8298 . - . ID=Phyra86606.1;Parent=Phyra86606;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_900 1 8311 scaffold_900 . repeat_region 1498 7191 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_898 1 8312 scaffold_898 . repeat_region 1588 7275 . ? . description=dust scaffold_898 ensembl protein_coding_gene 30 1291 . - . ID=Phyra86604;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_898000001;logic_name=jgi_phyra1 scaffold_898 ensembl transcript 30 1291 . - . ID=Phyra86604;Parent=Phyra86604;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_898 . CDS 30 653 . - 0 ID=Phyra86604;Parent=Phyra86604;rank=2 scaffold_898 . exon 30 653 . - . ID=Phyra86604.2;Parent=Phyra86604;constitutive=1;rank=2 scaffold_898 . CDS 707 1291 . - 0 ID=Phyra86604;Parent=Phyra86604;rank=1 scaffold_898 . exon 707 1291 . - . ID=Phyra86604.1;Parent=Phyra86604;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_895 1 8320 scaffold_895 . biological_region 186 190 0.999 - . logic_name=eponine scaffold_895 . repeat_region 566 595 . ? . description=trf scaffold_895 . repeat_region 960 1057 . ? . description=trf scaffold_895 . repeat_region 1393 7306 . ? . description=dust scaffold_895 . biological_region 8262 8267 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_892 1 8322 scaffold_892 . repeat_region 1642 7243 . ? . description=dust scaffold_892 ensembl protein_coding_gene 6 530 . - . ID=Phyra54163;biotype=protein_coding;external_name=gwEuk.892.1.1;logic_name=jgi_phyra1 scaffold_892 ensembl transcript 6 530 . - . ID=Phyra54163;Parent=Phyra54163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_892 . CDS 6 530 . - 0 ID=Phyra54163;Parent=Phyra54163;rank=1 scaffold_892 . exon 6 530 . - . ID=Phyra54163.1;Parent=Phyra54163;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_901 1 8322 scaffold_901 . biological_region 233 234 0.999 - . logic_name=eponine scaffold_901 . repeat_region 1124 4083 . ? . description=dust scaffold_901 . repeat_region 4617 4624 . ? . description=dust scaffold_901 . biological_region 4811 4814 0.999 - . logic_name=eponine scaffold_901 . biological_region 4862 4870 0.999 + . logic_name=eponine scaffold_901 . biological_region 4958 4962 0.999 + . logic_name=eponine scaffold_901 . repeat_region 5306 5335 . ? . description=trf scaffold_901 . repeat_region 5769 7030 . ? . description=dust scaffold_901 . biological_region 7286 7287 0.999 + . logic_name=eponine scaffold_901 . biological_region 7419 7420 0.999 + . logic_name=eponine scaffold_901 . biological_region 8152 8159 0.999 - . logic_name=eponine scaffold_901 . repeat_region 8155 8322 . ? . description=trf scaffold_901 . repeat_region 8156 8322 . ? . description=trf scaffold_901 . biological_region 8278 8286 0.999 - . logic_name=eponine scaffold_901 ensembl protein_coding_gene 150 623 . + . ID=Phyra86605;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_901000001;logic_name=jgi_phyra1 scaffold_901 ensembl transcript 150 623 . + . ID=Phyra86605;Parent=Phyra86605;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_901 . CDS 150 428 . + 0 ID=Phyra86605;Parent=Phyra86605;rank=1 scaffold_901 . exon 150 428 . + . ID=Phyra86605.1;Parent=Phyra86605;constitutive=1;rank=1 scaffold_901 . CDS 492 623 . + 0 ID=Phyra86605;Parent=Phyra86605;rank=2 scaffold_901 . exon 492 623 . + . ID=Phyra86605.2;Parent=Phyra86605;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_894 1 8323 scaffold_894 . repeat_region 1013 6461 . ? . description=dust scaffold_894 . repeat_region 6866 6884 . ? . description=dust scaffold_894 . repeat_region 7354 7362 . ? . description=dust scaffold_894 . repeat_region 7505 7524 . ? . description=trf scaffold_894 . repeat_region 7505 7524 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_893 1 8324 scaffold_893 . repeat_region 1204 4960 . ? . description=dust scaffold_893 . repeat_region 5837 6791 . ? . description=dust scaffold_893 . repeat_region 7271 7292 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_888 1 8328 scaffold_888 . repeat_region 201 479 . + . description=GypsyPi-1c_I-int scaffold_888 . biological_region 553 556 0.999 - . logic_name=eponine scaffold_888 . repeat_region 732 747 . ? . description=dust scaffold_888 . repeat_region 999 7041 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_885 1 8329 scaffold_885 . repeat_region 1143 1980 . ? . description=dust scaffold_885 . repeat_region 3207 4549 . ? . description=dust scaffold_885 . repeat_region 4550 4855 . - . description=GypsyPi-1c_I-int scaffold_885 . biological_region 4767 4772 0.999 + . logic_name=eponine scaffold_885 . biological_region 5268 5272 0.999 - . logic_name=eponine scaffold_885 . repeat_region 5525 5677 . ? . description=trf scaffold_885 . repeat_region 5787 6398 . ? . description=dust scaffold_885 . biological_region 7046 7047 0.999 + . logic_name=eponine scaffold_885 . biological_region 7135 7135 0.999 - . logic_name=eponine scaffold_885 ensembl protein_coding_gene 4669 5779 . - . ID=Phyra86594;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_885000001;logic_name=jgi_phyra1 scaffold_885 ensembl transcript 4669 5779 . - . ID=Phyra86594;Parent=Phyra86594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_885 . CDS 4669 4783 . - 0 ID=Phyra86594;Parent=Phyra86594;rank=2 scaffold_885 . exon 4669 4783 . - . ID=Phyra86594.2;Parent=Phyra86594;constitutive=1;ensembl_phase=2;rank=2 scaffold_885 . CDS 4803 5779 . - 0 ID=Phyra86594;Parent=Phyra86594;rank=1 scaffold_885 . exon 4803 5779 . - . ID=Phyra86594.1;Parent=Phyra86594;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_885 ensembl protein_coding_gene 7070 8241 . + . ID=Phyra86595;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_885000002;logic_name=jgi_phyra1 scaffold_885 ensembl transcript 7070 8241 . + . ID=Phyra86595;Parent=Phyra86595;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_885 . CDS 7070 7720 . + 0 ID=Phyra86595;Parent=Phyra86595;rank=1 scaffold_885 . exon 7070 7720 . + . ID=Phyra86595.1;Parent=Phyra86595;constitutive=1;rank=1 scaffold_885 . CDS 7792 7917 . + 0 ID=Phyra86595;Parent=Phyra86595;rank=2 scaffold_885 . exon 7792 7917 . + . ID=Phyra86595.2;Parent=Phyra86595;constitutive=1;rank=2 scaffold_885 . CDS 8177 8241 . + 0 ID=Phyra86595;Parent=Phyra86595;rank=3 scaffold_885 . exon 8177 8241 . + . ID=Phyra86595.3;Parent=Phyra86595;constitutive=1;ensembl_end_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_887 1 8329 scaffold_887 . repeat_region 281 322 . ? . description=trf scaffold_887 . repeat_region 1362 6951 . ? . description=dust scaffold_887 . biological_region 7260 7264 0.999 + . logic_name=eponine scaffold_887 ensembl protein_coding_gene 422 945 . + . ID=Phyra86597;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_887000001;logic_name=jgi_phyra1 scaffold_887 ensembl transcript 422 945 . + . ID=Phyra86597;Parent=Phyra86597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_887 . CDS 422 868 . + 0 ID=Phyra86597;Parent=Phyra86597;rank=1 scaffold_887 . exon 422 868 . + . ID=Phyra86597.1;Parent=Phyra86597;constitutive=1;rank=1 scaffold_887 . CDS 892 945 . + 0 ID=Phyra86597;Parent=Phyra86597;rank=2 scaffold_887 . exon 892 945 . + . ID=Phyra86597.2;Parent=Phyra86597;constitutive=1;rank=2 scaffold_887 ensembl protein_coding_gene 7196 8310 . + . ID=Phyra86598;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_887000002;logic_name=jgi_phyra1 scaffold_887 ensembl transcript 7196 8310 . + . ID=Phyra86598;Parent=Phyra86598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_887 . CDS 7196 8310 . + 0 ID=Phyra86598;Parent=Phyra86598;rank=1 scaffold_887 . exon 7196 8310 . + . ID=Phyra86598.1;Parent=Phyra86598;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_886 1 8331 scaffold_886 . repeat_region 1 515 . - . description=GypsyPi-1c_I-int scaffold_886 . biological_region 33 34 0.999 + . logic_name=eponine scaffold_886 . biological_region 344 344 0.999 - . logic_name=eponine scaffold_886 . biological_region 604 607 0.999 + . logic_name=eponine scaffold_886 . biological_region 989 989 0.999 - . logic_name=eponine scaffold_886 . biological_region 1040 1045 0.999 - . logic_name=eponine scaffold_886 . biological_region 1079 1081 0.999 + . logic_name=eponine scaffold_886 . biological_region 1117 1118 0.999 + . logic_name=eponine scaffold_886 . biological_region 1142 1147 0.999 - . logic_name=eponine scaffold_886 . biological_region 1194 1198 0.999 - . logic_name=eponine scaffold_886 . repeat_region 1335 6103 . ? . description=dust scaffold_886 . repeat_region 6105 8319 . + . description=Polinton-1_PI scaffold_886 . repeat_region 6388 6396 . ? . description=dust scaffold_886 ensembl protein_coding_gene 70 793 . - . ID=Phyra86596;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_886000001;logic_name=jgi_phyra1 scaffold_886 ensembl transcript 70 793 . - . ID=Phyra86596;Parent=Phyra86596;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_886 . CDS 70 335 . - 0 ID=Phyra86596;Parent=Phyra86596;rank=2 scaffold_886 . exon 70 335 . - . ID=Phyra86596.2;Parent=Phyra86596;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_886 . CDS 383 793 . - 0 ID=Phyra86596;Parent=Phyra86596;rank=1 scaffold_886 . exon 383 793 . - . ID=Phyra86596.1;Parent=Phyra86596;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_977 1 8331 scaffold_977 . repeat_region 1834 7495 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_889 1 8335 scaffold_889 . repeat_region 1038 1147 . ? . description=trf scaffold_889 . repeat_region 1093 1200 . ? . description=trf scaffold_889 . repeat_region 1499 2038 . ? . description=dust scaffold_889 . repeat_region 3390 7253 . ? . description=dust scaffold_889 . repeat_region 7489 7725 . - . description=GypsyPi-1c_LTR ##gff-version 3 ##sequence-region scaffold_987 1 8337 scaffold_987 . repeat_region 1 56 . - . description=GypsyPi-1c_I-int scaffold_987 . biological_region 536 537 0.999 - . logic_name=eponine scaffold_987 . biological_region 587 592 0.999 - . logic_name=eponine scaffold_987 . biological_region 627 630 0.999 + . logic_name=eponine scaffold_987 . biological_region 691 694 0.999 - . logic_name=eponine scaffold_987 . biological_region 743 745 0.999 - . logic_name=eponine scaffold_987 . repeat_region 1100 3033 . ? . description=dust scaffold_987 . repeat_region 4032 4081 . ? . description=dust scaffold_987 . repeat_region 4321 4387 . ? . description=trf scaffold_987 . repeat_region 5115 5210 . ? . description=dust scaffold_987 . biological_region 6773 6779 0.999 + . logic_name=eponine scaffold_987 . biological_region 6845 6849 0.999 + . logic_name=eponine scaffold_987 . biological_region 7000 7001 0.999 - . logic_name=eponine scaffold_987 . repeat_region 7126 7192 . ? . description=trf scaffold_987 . repeat_region 7126 7205 . ? . description=trf scaffold_987 . biological_region 7268 7274 0.999 - . logic_name=eponine scaffold_987 . biological_region 7983 7987 0.999 - . logic_name=eponine scaffold_987 . biological_region 8143 8146 0.999 + . logic_name=eponine scaffold_987 ensembl protein_coding_gene 6548 8332 . - . ID=Phyra86659;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_987000001;logic_name=jgi_phyra1 scaffold_987 ensembl transcript 6548 8332 . - . ID=Phyra86659;Parent=Phyra86659;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_987 . CDS 6548 6670 . - 0 ID=Phyra86659;Parent=Phyra86659;rank=3 scaffold_987 . exon 6548 6670 . - . ID=Phyra86659.3;Parent=Phyra86659;constitutive=1;rank=3 scaffold_987 . CDS 6824 8150 . - 0 ID=Phyra86659;Parent=Phyra86659;rank=2 scaffold_987 . exon 6824 8150 . - . ID=Phyra86659.2;Parent=Phyra86659;constitutive=1;ensembl_phase=2;rank=2 scaffold_987 . CDS 8232 8332 . - 0 ID=Phyra86659;Parent=Phyra86659;rank=1 scaffold_987 . exon 8232 8332 . - . ID=Phyra86659.1;Parent=Phyra86659;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_884 1 8342 scaffold_884 . repeat_region 1532 6851 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_856 1 8344 scaffold_856 . repeat_region 266 277 . ? . description=dust scaffold_856 . repeat_region 5156 6487 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_883 1 8348 scaffold_883 . repeat_region 1648 7213 . ? . description=dust scaffold_883 . biological_region 8260 8260 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1021 1 8350 scaffold_1021 . repeat_region 1354 2486 . ? . description=dust scaffold_1021 . repeat_region 3388 7104 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_881 1 8352 scaffold_881 . repeat_region 731 882 . - . description=GypsyPi-1c_LTR scaffold_881 . repeat_region 1362 7489 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_879 1 8359 scaffold_879 . repeat_region 430 448 . ? . description=dust scaffold_879 . repeat_region 450 6592 . ? . description=dust scaffold_879 ensembl protein_coding_gene 112 363 . + . ID=Phyra54036;biotype=protein_coding;external_name=gwEuk.879.1.1;logic_name=jgi_phyra1 scaffold_879 ensembl transcript 112 363 . + . ID=Phyra54036;Parent=Phyra54036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_879 . CDS 112 363 . + 0 ID=Phyra54036;Parent=Phyra54036;rank=1 scaffold_879 . exon 112 363 . + . ID=Phyra54036.1;Parent=Phyra54036;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_877 1 8360 scaffold_877 . repeat_region 848 4528 . ? . description=dust scaffold_877 . repeat_region 5582 6618 . ? . description=dust scaffold_877 . repeat_region 6619 6795 . + . description=(CGA)n scaffold_877 . repeat_region 6650 6704 . ? . description=trf scaffold_877 . biological_region 6737 6737 0.999 + . logic_name=eponine scaffold_877 . repeat_region 6764 6796 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_874 1 8362 scaffold_874 . repeat_region 1 260 . - . description=GypsyPi-1c_I-int scaffold_874 . repeat_region 810 6833 . ? . description=dust scaffold_874 . biological_region 8043 8046 0.999 + . logic_name=eponine scaffold_874 ensembl protein_coding_gene 30 545 . - . ID=Phyra86591;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_874000001;logic_name=jgi_phyra1 scaffold_874 ensembl transcript 30 545 . - . ID=Phyra86591;Parent=Phyra86591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_874 . CDS 30 545 . - 0 ID=Phyra86591;Parent=Phyra86591;rank=1 scaffold_874 . exon 30 545 . - . ID=Phyra86591.1;Parent=Phyra86591;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_875 1 8362 scaffold_875 . repeat_region 2195 7459 . ? . description=dust scaffold_875 ensembl protein_coding_gene 7694 8152 . - . ID=Phyra86592;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_875000001;logic_name=jgi_phyra1 scaffold_875 ensembl transcript 7694 8152 . - . ID=Phyra86592;Parent=Phyra86592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_875 . CDS 7694 8152 . - 0 ID=Phyra86592;Parent=Phyra86592;rank=1 scaffold_875 . exon 7694 8152 . - . ID=Phyra86592.1;Parent=Phyra86592;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_880 1 8362 scaffold_880 . repeat_region 1268 1310 . ? . description=trf scaffold_880 . repeat_region 1744 6552 . ? . description=dust scaffold_880 . biological_region 6786 6789 0.999 - . logic_name=eponine scaffold_880 . biological_region 6816 6817 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_873 1 8365 scaffold_873 . biological_region 148 152 0.999 - . logic_name=eponine scaffold_873 . biological_region 188 189 0.999 + . logic_name=eponine scaffold_873 . biological_region 225 226 0.999 + . logic_name=eponine scaffold_873 . biological_region 250 255 0.999 - . logic_name=eponine scaffold_873 . biological_region 302 306 0.999 - . logic_name=eponine scaffold_873 . repeat_region 1175 6834 . ? . description=dust scaffold_873 . biological_region 8251 8254 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_872 1 8367 scaffold_872 . repeat_region 857 6914 . ? . description=dust scaffold_872 ensembl protein_coding_gene 7836 8355 . - . ID=Phyra86590;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_872000001;logic_name=jgi_phyra1 scaffold_872 ensembl transcript 7836 8355 . - . ID=Phyra86590;Parent=Phyra86590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_872 . CDS 7836 8354 . - 0 ID=Phyra86590;Parent=Phyra86590;rank=1 scaffold_872 . exon 7836 8355 . - . ID=Phyra86590.1;Parent=Phyra86590;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_970 1 8371 scaffold_970 . repeat_region 1027 7367 . ? . description=dust scaffold_970 . repeat_region 7708 7731 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_890 1 8373 scaffold_890 . biological_region 616 618 0.999 + . logic_name=eponine scaffold_890 . repeat_region 1250 6946 . ? . description=dust scaffold_890 ensembl protein_coding_gene 694 1017 . + . ID=Phyra86599;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_890000001;logic_name=jgi_phyra1 scaffold_890 ensembl transcript 694 1017 . + . ID=Phyra86599;Parent=Phyra86599;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_890 . CDS 694 1017 . + 0 ID=Phyra86599;Parent=Phyra86599;rank=1 scaffold_890 . exon 694 1017 . + . ID=Phyra86599.1;Parent=Phyra86599;constitutive=1;rank=1 scaffold_890 ensembl protein_coding_gene 7069 7764 . - . ID=Phyra86600;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_890000002;logic_name=jgi_phyra1 scaffold_890 ensembl transcript 7069 7764 . - . ID=Phyra86600;Parent=Phyra86600;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_890 . CDS 7069 7764 . - 0 ID=Phyra86600;Parent=Phyra86600;rank=1 scaffold_890 . exon 7069 7764 . - . ID=Phyra86600.1;Parent=Phyra86600;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_882 1 8374 scaffold_882 . repeat_region 1127 7148 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_897 1 8374 scaffold_897 . repeat_region 3 526 . + . description=GypsyPi-1c_I-int scaffold_897 . repeat_region 1312 1329 . ? . description=dust scaffold_897 . repeat_region 1372 2385 . ? . description=dust scaffold_897 . repeat_region 3777 7091 . ? . description=dust scaffold_897 . repeat_region 7114 7122 . ? . description=dust scaffold_897 . repeat_region 7803 7885 . - . description=Polinton-1_PI scaffold_897 . repeat_region 8344 8352 . ? . description=dust scaffold_897 ensembl protein_coding_gene 151 405 . + . ID=Phyra54168;biotype=protein_coding;external_name=gwEuk.897.1.1;logic_name=jgi_phyra1 scaffold_897 ensembl transcript 151 405 . + . ID=Phyra54168;Parent=Phyra54168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_897 . CDS 151 405 . + 0 ID=Phyra54168;Parent=Phyra54168;rank=1 scaffold_897 . exon 151 405 . + . ID=Phyra54168.1;Parent=Phyra54168;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_868 1 8379 scaffold_868 . biological_region 181 184 0.999 - . logic_name=eponine scaffold_868 . biological_region 182 182 0.999 + . logic_name=eponine scaffold_868 . biological_region 272 275 0.999 - . logic_name=eponine scaffold_868 . biological_region 1147 1148 0.999 + . logic_name=eponine scaffold_868 . repeat_region 1248 7081 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_867 1 8382 scaffold_867 . repeat_region 11 440 . + . description=GypsyPi-1c_I-int scaffold_867 . repeat_region 695 973 . + . description=GypsyPi-1c_I-int scaffold_867 . repeat_region 982 6777 . ? . description=dust scaffold_867 ensembl protein_coding_gene 65 319 . + . ID=Phyra53926;biotype=protein_coding;external_name=gwEuk.867.2.1;logic_name=jgi_phyra1 scaffold_867 ensembl transcript 65 319 . + . ID=Phyra53926;Parent=Phyra53926;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_867 . CDS 65 319 . + 0 ID=Phyra53926;Parent=Phyra53926;rank=1 scaffold_867 . exon 65 319 . + . ID=Phyra53926.1;Parent=Phyra53926;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_866 1 8383 scaffold_866 . repeat_region 200 230 . ? . description=trf scaffold_866 . repeat_region 1612 7419 . ? . description=dust scaffold_866 . biological_region 7942 7942 0.999 - . logic_name=eponine scaffold_866 . repeat_region 7979 7987 . ? . description=dust scaffold_866 . repeat_region 8231 8239 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_865 1 8387 scaffold_865 . repeat_region 209 218 . ? . description=dust scaffold_865 . repeat_region 973 6388 . ? . description=dust scaffold_865 . repeat_region 6768 7185 . + . description=GypsyPi-1c_I-int scaffold_865 . biological_region 6852 6855 0.999 + . logic_name=eponine scaffold_865 . repeat_region 7226 7499 . + . description=GypsyPi-1c_I-int scaffold_865 . repeat_region 7810 7839 . ? . description=trf scaffold_865 . biological_region 8042 8047 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_864 1 8388 scaffold_864 . repeat_region 178 190 . ? . description=dust scaffold_864 . repeat_region 1225 1257 . ? . description=trf scaffold_864 . repeat_region 1527 6807 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_964 1 8388 scaffold_964 . repeat_region 1436 2655 . ? . description=dust scaffold_964 . repeat_region 3716 7270 . ? . description=dust scaffold_964 ensembl protein_coding_gene 7493 8375 . - . ID=Phyra86644;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_964000001;logic_name=jgi_phyra1 scaffold_964 ensembl transcript 7493 8375 . - . ID=Phyra86644;Parent=Phyra86644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_964 . CDS 7493 7578 . - 0 ID=Phyra86644;Parent=Phyra86644;rank=2 scaffold_964 . exon 7493 7578 . - . ID=Phyra86644.2;Parent=Phyra86644;constitutive=1;ensembl_phase=1;rank=2 scaffold_964 . CDS 7605 8373 . - 0 ID=Phyra86644;Parent=Phyra86644;rank=1 scaffold_964 . exon 7605 8375 . - . ID=Phyra86644.1;Parent=Phyra86644;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_863 1 8391 scaffold_863 . repeat_region 1293 1308 . ? . description=dust scaffold_863 . repeat_region 1659 1666 . ? . description=dust scaffold_863 . repeat_region 1844 7644 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_903 1 8395 scaffold_903 . biological_region 48 51 0.999 + . logic_name=eponine scaffold_903 . repeat_region 770 4925 . ? . description=dust scaffold_903 . repeat_region 5432 5589 . ? . description=trf scaffold_903 . repeat_region 5432 5612 . ? . description=trf scaffold_903 . biological_region 5660 5660 0.999 + . logic_name=eponine scaffold_903 . biological_region 5804 5808 0.999 - . logic_name=eponine scaffold_903 . biological_region 5855 5855 0.999 - . logic_name=eponine scaffold_903 . repeat_region 6051 6884 . ? . description=dust scaffold_903 . biological_region 7359 7363 0.999 + . logic_name=eponine scaffold_903 . biological_region 7405 7408 0.999 + . logic_name=eponine scaffold_903 . repeat_region 7431 7457 . ? . description=trf scaffold_903 ensembl protein_coding_gene 8001 8393 . - . ID=Phyra54473;biotype=protein_coding;external_name=gwEuk.903.3.1;logic_name=jgi_phyra1 scaffold_903 ensembl transcript 8001 8393 . - . ID=Phyra54473;Parent=Phyra54473;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_903 . CDS 8001 8393 . - 0 ID=Phyra54473;Parent=Phyra54473;rank=1 scaffold_903 . exon 8001 8393 . - . ID=Phyra54473.1;Parent=Phyra54473;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_862 1 8399 scaffold_862 . biological_region 783 785 0.999 + . logic_name=eponine scaffold_862 . repeat_region 1150 4504 . ? . description=dust scaffold_862 . repeat_region 5789 6623 . ? . description=dust scaffold_862 . repeat_region 7050 7074 . ? . description=trf scaffold_862 . repeat_region 7570 8347 . ? . description=trf scaffold_862 . repeat_region 7574 8347 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_861 1 8404 scaffold_861 . biological_region 681 686 0.999 + . logic_name=eponine scaffold_861 . repeat_region 800 4635 . ? . description=dust scaffold_861 . biological_region 5128 5128 0.999 + . logic_name=eponine scaffold_861 . biological_region 5613 5617 0.999 + . logic_name=eponine scaffold_861 . biological_region 6207 6211 0.999 - . logic_name=eponine scaffold_861 . biological_region 6612 6613 0.999 + . logic_name=eponine scaffold_861 . repeat_region 7103 7155 . ? . description=trf scaffold_861 ensembl protein_coding_gene 7202 7666 . + . ID=Phyra53922;biotype=protein_coding;external_name=gwEuk.861.4.1;logic_name=jgi_phyra1 scaffold_861 ensembl transcript 7202 7666 . + . ID=Phyra53922;Parent=Phyra53922;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_861 . CDS 7202 7666 . + 0 ID=Phyra53922;Parent=Phyra53922;rank=1 scaffold_861 . exon 7202 7666 . + . ID=Phyra53922.1;Parent=Phyra53922;constitutive=1;rank=1 scaffold_861 ensembl protein_coding_gene 31 545 . + . ID=Phyra86584;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_861000001;logic_name=jgi_phyra1 scaffold_861 ensembl transcript 31 545 . + . ID=Phyra86584;Parent=Phyra86584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_861 . CDS 31 421 . + 0 ID=Phyra86584;Parent=Phyra86584;rank=1 scaffold_861 . exon 31 421 . + . ID=Phyra86584.1;Parent=Phyra86584;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_861 . CDS 469 545 . + 0 ID=Phyra86584;Parent=Phyra86584;rank=2 scaffold_861 . exon 469 545 . + . ID=Phyra86584.2;Parent=Phyra86584;constitutive=1;ensembl_phase=1;rank=2 scaffold_861 ensembl protein_coding_gene 4642 5888 . - . ID=Phyra86585;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_861000002;logic_name=jgi_phyra1 scaffold_861 ensembl transcript 4642 5888 . - . ID=Phyra86585;Parent=Phyra86585;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_861 . CDS 4642 4663 . - 0 ID=Phyra86585;Parent=Phyra86585;rank=3 scaffold_861 . exon 4642 4663 . - . ID=Phyra86585.3;Parent=Phyra86585;constitutive=1;ensembl_phase=2;rank=3 scaffold_861 . CDS 4747 4877 . - 0 ID=Phyra86585;Parent=Phyra86585;rank=2 scaffold_861 . exon 4747 4877 . - . ID=Phyra86585.2;Parent=Phyra86585;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_861 . CDS 4977 5888 . - 0 ID=Phyra86585;Parent=Phyra86585;rank=1 scaffold_861 . exon 4977 5888 . - . ID=Phyra86585.1;Parent=Phyra86585;constitutive=1;rank=1 scaffold_861 ensembl protein_coding_gene 6132 6694 . + . ID=Phyra86586;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_861000003;logic_name=jgi_phyra1 scaffold_861 ensembl transcript 6132 6694 . + . ID=Phyra86586;Parent=Phyra86586;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_861 . CDS 6132 6398 . + 0 ID=Phyra86586;Parent=Phyra86586;rank=1 scaffold_861 . exon 6132 6398 . + . ID=Phyra86586.1;Parent=Phyra86586;constitutive=1;rank=1 scaffold_861 . CDS 6485 6694 . + 0 ID=Phyra86586;Parent=Phyra86586;rank=2 scaffold_861 . exon 6485 6694 . + . ID=Phyra86586.2;Parent=Phyra86586;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_933 1 8406 scaffold_933 . repeat_region 722 765 . ? . description=trf scaffold_933 . repeat_region 1256 2066 . ? . description=dust scaffold_933 . biological_region 3489 3493 0.999 - . logic_name=eponine scaffold_933 . repeat_region 3794 4626 . ? . description=dust scaffold_933 . biological_region 5058 5062 0.999 + . logic_name=eponine scaffold_933 . repeat_region 5660 7395 . ? . description=dust scaffold_933 . repeat_region 7906 7948 . ? . description=trf scaffold_933 . repeat_region 8047 8093 . ? . description=trf scaffold_933 ensembl protein_coding_gene 7396 7780 . + . ID=Phyra54705;biotype=protein_coding;external_name=gwEuk.933.5.1;logic_name=jgi_phyra1 scaffold_933 ensembl transcript 7396 7780 . + . ID=Phyra54705;Parent=Phyra54705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_933 . CDS 7396 7780 . + 0 ID=Phyra54705;Parent=Phyra54705;rank=1 scaffold_933 . exon 7396 7780 . + . ID=Phyra54705.1;Parent=Phyra54705;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_933 ensembl protein_coding_gene 52 563 . + . ID=Phyra86623;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_933000001;logic_name=jgi_phyra1 scaffold_933 ensembl transcript 52 563 . + . ID=Phyra86623;Parent=Phyra86623;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_933 . CDS 52 235 . + 0 ID=Phyra86623;Parent=Phyra86623;rank=1 scaffold_933 . exon 52 235 . + . ID=Phyra86623.1;Parent=Phyra86623;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_933 . CDS 331 563 . + 0 ID=Phyra86623;Parent=Phyra86623;rank=2 scaffold_933 . exon 331 563 . + . ID=Phyra86623.2;Parent=Phyra86623;constitutive=1;ensembl_phase=1;rank=2 scaffold_933 ensembl protein_coding_gene 4709 5657 . + . ID=Phyra86624;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_933000002;logic_name=jgi_phyra1 scaffold_933 ensembl transcript 4709 5657 . + . ID=Phyra86624;Parent=Phyra86624;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_933 . CDS 4709 5657 . + 0 ID=Phyra86624;Parent=Phyra86624;rank=1 scaffold_933 . exon 4709 5657 . + . ID=Phyra86624.1;Parent=Phyra86624;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_876 1 8411 scaffold_876 . repeat_region 878 927 . ? . description=dust scaffold_876 . repeat_region 1889 1935 . ? . description=trf scaffold_876 . repeat_region 2079 7274 . ? . description=dust scaffold_876 . biological_region 7655 7656 0.999 - . logic_name=eponine scaffold_876 ensembl protein_coding_gene 7400 8355 . + . ID=Phyra86593;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_876000001;logic_name=jgi_phyra1 scaffold_876 ensembl transcript 7400 8355 . + . ID=Phyra86593;Parent=Phyra86593;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_876 . CDS 7400 8355 . + 0 ID=Phyra86593;Parent=Phyra86593;rank=1 scaffold_876 . exon 7400 8355 . + . ID=Phyra86593.1;Parent=Phyra86593;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_857 1 8413 scaffold_857 . repeat_region 547 554 . ? . description=dust scaffold_857 . repeat_region 753 760 . ? . description=dust scaffold_857 . repeat_region 2163 2190 . ? . description=trf scaffold_857 . repeat_region 2163 2191 . ? . description=dust scaffold_857 . repeat_region 2235 2242 . ? . description=dust scaffold_857 . repeat_region 5231 5421 . ? . description=trf scaffold_857 . repeat_region 5264 5402 . ? . description=trf scaffold_857 . repeat_region 5888 6828 . ? . description=dust scaffold_857 . repeat_region 7042 7053 . ? . description=dust scaffold_857 . repeat_region 7238 7286 . ? . description=trf scaffold_857 ensembl protein_coding_gene 15 455 . + . ID=Phyra86581;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_857000001;logic_name=jgi_phyra1 scaffold_857 ensembl transcript 15 455 . + . ID=Phyra86581;Parent=Phyra86581;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_857 . CDS 15 455 . + 0 ID=Phyra86581;Parent=Phyra86581;rank=1 scaffold_857 . exon 15 455 . + . ID=Phyra86581.1;Parent=Phyra86581;constitutive=1;rank=1 scaffold_857 ensembl protein_coding_gene 3063 4424 . + . ID=Phyra86582;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_857000002;logic_name=jgi_phyra1 scaffold_857 ensembl transcript 3063 4424 . + . ID=Phyra86582;Parent=Phyra86582;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_857 . CDS 3063 3255 . + 0 ID=Phyra86582;Parent=Phyra86582;rank=1 scaffold_857 . exon 3063 3255 . + . ID=Phyra86582.1;Parent=Phyra86582;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_857 . CDS 3601 4424 . + 0 ID=Phyra86582;Parent=Phyra86582;rank=2 scaffold_857 . exon 3601 4424 . + . ID=Phyra86582.2;Parent=Phyra86582;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1003 1 8417 scaffold_1003 . repeat_region 1460 2449 . ? . description=dust scaffold_1003 . repeat_region 3080 3104 . ? . description=dust scaffold_1003 . repeat_region 3080 3109 . ? . description=trf scaffold_1003 . repeat_region 3107 3668 . + . description=GypsyPi-1c_I-int scaffold_1003 . repeat_region 3710 6973 . ? . description=dust scaffold_1003 . repeat_region 7552 7584 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_854 1 8426 scaffold_854 . repeat_region 95 125 . ? . description=trf scaffold_854 . biological_region 679 682 0.999 - . logic_name=eponine scaffold_854 . repeat_region 1539 7588 . ? . description=dust scaffold_854 ensembl protein_coding_gene 39 1325 . - . ID=Phyra86580;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_854000001;logic_name=jgi_phyra1 scaffold_854 ensembl transcript 39 1325 . - . ID=Phyra86580;Parent=Phyra86580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_854 . CDS 39 1325 . - 0 ID=Phyra86580;Parent=Phyra86580;rank=1 scaffold_854 . exon 39 1325 . - . ID=Phyra86580.1;Parent=Phyra86580;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_853 1 8427 scaffold_853 . repeat_region 187 201 . ? . description=dust scaffold_853 . repeat_region 1255 4868 . ? . description=dust scaffold_853 . repeat_region 6345 6352 . ? . description=dust scaffold_853 . biological_region 7767 7767 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_852 1 8428 scaffold_852 . repeat_region 1794 6788 . ? . description=dust scaffold_852 ensembl protein_coding_gene 108 1592 . - . ID=Phyra86578;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_852000001;logic_name=jgi_phyra1 scaffold_852 ensembl transcript 108 1592 . - . ID=Phyra86578;Parent=Phyra86578;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_852 . CDS 108 1592 . - 0 ID=Phyra86578;Parent=Phyra86578;rank=1 scaffold_852 . exon 108 1592 . - . ID=Phyra86578.1;Parent=Phyra86578;constitutive=1;rank=1 scaffold_852 ensembl protein_coding_gene 7578 8399 . - . ID=Phyra86579;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_852000002;logic_name=jgi_phyra1 scaffold_852 ensembl transcript 7578 8399 . - . ID=Phyra86579;Parent=Phyra86579;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_852 . CDS 7578 8399 . - 0 ID=Phyra86579;Parent=Phyra86579;rank=1 scaffold_852 . exon 7578 8399 . - . ID=Phyra86579.1;Parent=Phyra86579;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_849 1 8434 scaffold_849 . repeat_region 1674 7325 . ? . description=dust scaffold_849 . biological_region 7729 7733 0.999 + . logic_name=eponine scaffold_849 . biological_region 7853 7855 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_850 1 8437 scaffold_850 . biological_region 218 225 0.999 - . logic_name=eponine scaffold_850 . repeat_region 470 494 . ? . description=trf scaffold_850 . biological_region 1039 1045 0.999 + . logic_name=eponine scaffold_850 . biological_region 1131 1134 0.999 - . logic_name=eponine scaffold_850 . repeat_region 2497 6771 . ? . description=dust scaffold_850 ensembl protein_coding_gene 1005 1919 . - . ID=Phyra86575;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_850000001;logic_name=jgi_phyra1 scaffold_850 ensembl transcript 1005 1919 . - . ID=Phyra86575;Parent=Phyra86575;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_850 . CDS 1005 1919 . - 0 ID=Phyra86575;Parent=Phyra86575;rank=1 scaffold_850 . exon 1005 1919 . - . ID=Phyra86575.1;Parent=Phyra86575;constitutive=1;rank=1 scaffold_850 ensembl protein_coding_gene 7054 8437 . - . ID=Phyra86576;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_850000002;logic_name=jgi_phyra1 scaffold_850 ensembl transcript 7054 8437 . - . ID=Phyra86576;Parent=Phyra86576;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_850 . CDS 7054 7224 . - 0 ID=Phyra86576;Parent=Phyra86576;rank=4 scaffold_850 . exon 7054 7224 . - . ID=Phyra86576.4;Parent=Phyra86576;constitutive=1;rank=4 scaffold_850 . CDS 7286 7496 . - 0 ID=Phyra86576;Parent=Phyra86576;rank=3 scaffold_850 . exon 7286 7496 . - . ID=Phyra86576.3;Parent=Phyra86576;constitutive=1;ensembl_phase=2;rank=3 scaffold_850 . CDS 7569 8000 . - 0 ID=Phyra86576;Parent=Phyra86576;rank=2 scaffold_850 . exon 7569 8000 . - . ID=Phyra86576.2;Parent=Phyra86576;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_850 . CDS 8206 8435 . - 0 ID=Phyra86576;Parent=Phyra86576;rank=1 scaffold_850 . exon 8206 8437 . - . ID=Phyra86576.1;Parent=Phyra86576;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_848 1 8438 scaffold_848 . repeat_region 1572 6842 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_855 1 8439 scaffold_855 . repeat_region 714 6754 . ? . description=dust scaffold_855 . repeat_region 7956 7964 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_860 1 8439 scaffold_860 . repeat_region 1532 7536 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_847 1 8441 scaffold_847 . repeat_region 440 447 . ? . description=dust scaffold_847 . biological_region 920 923 0.999 - . logic_name=eponine scaffold_847 . repeat_region 965 978 . ? . description=dust scaffold_847 . repeat_region 981 5435 . ? . description=dust scaffold_847 . repeat_region 5739 5747 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_846 1 8447 scaffold_846 . repeat_region 1346 7170 . ? . description=dust scaffold_846 ensembl protein_coding_gene 6 716 . - . ID=Phyra72438;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_846000001;logic_name=jgi_phyra1 scaffold_846 ensembl transcript 6 716 . - . ID=Phyra72438;Parent=Phyra72438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_846 . CDS 6 716 . - 0 ID=Phyra72438;Parent=Phyra72438;rank=1 scaffold_846 . exon 6 716 . - . ID=Phyra72438.1;Parent=Phyra72438;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_844 1 8448 scaffold_844 . biological_region 410 412 0.999 - . logic_name=eponine scaffold_844 . repeat_region 441 885 . ? . description=trf scaffold_844 . biological_region 463 467 0.999 + . logic_name=eponine scaffold_844 . biological_region 1086 1088 0.999 - . logic_name=eponine scaffold_844 . repeat_region 1688 6905 . ? . description=dust scaffold_844 ensembl protein_coding_gene 43 1126 . - . ID=Phyra86571;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_844000001;logic_name=jgi_phyra1 scaffold_844 ensembl transcript 43 1126 . - . ID=Phyra86571;Parent=Phyra86571;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_844 . CDS 43 1126 . - 0 ID=Phyra86571;Parent=Phyra86571;rank=1 scaffold_844 . exon 43 1126 . - . ID=Phyra86571.1;Parent=Phyra86571;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_918 1 8452 scaffold_918 . repeat_region 273 578 . + . description=GypsyPi-1c_LTR scaffold_918 . repeat_region 1065 6773 . ? . description=dust scaffold_918 . biological_region 8140 8142 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_843 1 8453 scaffold_843 . repeat_region 1361 7170 . ? . description=dust scaffold_843 . repeat_region 7175 7232 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_845 1 8461 scaffold_845 . repeat_region 454 754 . + . description=Sola3-2_PS scaffold_845 . biological_region 2910 2913 0.999 + . logic_name=eponine scaffold_845 . repeat_region 3561 3606 . ? . description=trf scaffold_845 . biological_region 3938 3941 0.999 + . logic_name=eponine scaffold_845 . repeat_region 4429 4859 . ? . description=dust scaffold_845 . repeat_region 5766 7295 . ? . description=dust scaffold_845 ensembl protein_coding_gene 74 1396 . + . ID=Phyra86572;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_845000001;logic_name=jgi_phyra1 scaffold_845 ensembl transcript 74 1396 . + . ID=Phyra86572;Parent=Phyra86572;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_845 . CDS 74 1396 . + 0 ID=Phyra86572;Parent=Phyra86572;rank=1 scaffold_845 . exon 74 1396 . + . ID=Phyra86572.1;Parent=Phyra86572;constitutive=1;rank=1 scaffold_845 ensembl protein_coding_gene 1973 4131 . - . ID=Phyra86573;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_845000002;logic_name=jgi_phyra1 scaffold_845 ensembl transcript 1973 4131 . - . ID=Phyra86573;Parent=Phyra86573;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_845 . CDS 1973 2131 . - 0 ID=Phyra86573;Parent=Phyra86573;rank=5 scaffold_845 . exon 1973 2131 . - . ID=Phyra86573.5;Parent=Phyra86573;constitutive=1;rank=5 scaffold_845 . CDS 2339 3035 . - 0 ID=Phyra86573;Parent=Phyra86573;rank=4 scaffold_845 . exon 2339 3035 . - . ID=Phyra86573.4;Parent=Phyra86573;constitutive=1;ensembl_phase=2;rank=4 scaffold_845 . CDS 3097 3567 . - 0 ID=Phyra86573;Parent=Phyra86573;rank=3 scaffold_845 . exon 3097 3567 . - . ID=Phyra86573.3;Parent=Phyra86573;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_845 . CDS 3612 3721 . - 0 ID=Phyra86573;Parent=Phyra86573;rank=2 scaffold_845 . exon 3612 3721 . - . ID=Phyra86573.2;Parent=Phyra86573;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_845 . CDS 3922 4131 . - 0 ID=Phyra86573;Parent=Phyra86573;rank=1 scaffold_845 . exon 3922 4131 . - . ID=Phyra86573.1;Parent=Phyra86573;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_838 1 8463 scaffold_838 . repeat_region 1 52 . ? . description=dust scaffold_838 . repeat_region 1 1154 . ? . description=trf scaffold_838 . repeat_region 193 232 . ? . description=trf scaffold_838 . repeat_region 193 234 . ? . description=dust scaffold_838 . repeat_region 207 234 . ? . description=trf scaffold_838 . biological_region 302 303 0.999 + . logic_name=eponine scaffold_838 . repeat_region 417 468 . ? . description=dust scaffold_838 . repeat_region 609 647 . ? . description=trf scaffold_838 . repeat_region 609 654 . ? . description=dust scaffold_838 . repeat_region 623 647 . ? . description=trf scaffold_838 . biological_region 715 716 0.999 + . logic_name=eponine scaffold_838 . repeat_region 833 896 . ? . description=dust scaffold_838 . repeat_region 1015 1071 . ? . description=dust scaffold_838 . repeat_region 1022 1071 . ? . description=trf scaffold_838 . repeat_region 1022 1071 . ? . description=trf scaffold_838 . repeat_region 1036 1071 . ? . description=trf scaffold_838 . repeat_region 1155 7133 . ? . description=dust scaffold_838 . biological_region 8325 8330 0.999 + . logic_name=eponine scaffold_838 . biological_region 8391 8392 0.999 - . logic_name=eponine scaffold_838 . biological_region 8422 8422 0.999 - . logic_name=eponine scaffold_838 ensembl tRNA_gene 325 397 . - . ID=EPrPRAG00000000144;biotype=tRNA;description=tRNA-Glu for anticodon UUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_838 ensembl transcript 325 397 . - . ID=EPrPRAT00000000144;Parent=EPrPRAG00000000144;biotype=tRNA;logic_name=ncrna_eg scaffold_838 ensembl tRNA_gene 738 810 . - . ID=EPrPRAG00000000184;biotype=tRNA;description=tRNA-Glu for anticodon UUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_838 ensembl transcript 738 810 . - . ID=EPrPRAT00000000184;Parent=EPrPRAG00000000184;biotype=tRNA;logic_name=ncrna_eg scaffold_838 . exon 325 397 . - . ID=EPrPRAE00000000144;Parent=EPrPRAT00000000144;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_838 . exon 738 810 . - . ID=EPrPRAE00000000184;Parent=EPrPRAT00000000184;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_838 ensembl protein_coding_gene 103 701 . - . ID=Phyra86568;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_838000001;logic_name=jgi_phyra1 scaffold_838 ensembl transcript 103 701 . - . ID=Phyra86568;Parent=Phyra86568;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_838 . CDS 103 382 . - 0 ID=Phyra86568;Parent=Phyra86568;rank=2 scaffold_838 . exon 103 382 . - . ID=Phyra86568.2;Parent=Phyra86568;constitutive=1;ensembl_phase=2;rank=2 scaffold_838 . CDS 523 701 . - 0 ID=Phyra86568;Parent=Phyra86568;rank=1 scaffold_838 . exon 523 701 . - . ID=Phyra86568.1;Parent=Phyra86568;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_840 1 8463 scaffold_840 . repeat_region 1218 7161 . ? . description=dust scaffold_840 . biological_region 7401 7403 0.999 - . logic_name=eponine scaffold_840 . biological_region 8001 8004 0.999 + . logic_name=eponine scaffold_840 . biological_region 8280 8280 0.999 + . logic_name=eponine scaffold_840 . repeat_region 8373 8420 . ? . description=dust scaffold_840 . repeat_region 8391 8418 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_839 1 8465 scaffold_839 . repeat_region 844 4118 . ? . description=dust scaffold_839 . repeat_region 4997 5018 . ? . description=dust scaffold_839 . repeat_region 5124 5154 . ? . description=dust scaffold_839 . biological_region 6274 6275 0.999 + . logic_name=eponine scaffold_839 ensembl protein_coding_gene 6697 7950 . - . ID=Phyra53774;biotype=protein_coding;external_name=gwEuk.839.5.1;logic_name=jgi_phyra1 scaffold_839 ensembl transcript 6697 7950 . - . ID=Phyra53774;Parent=Phyra53774;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_839 . CDS 6697 7223 . - 0 ID=Phyra53774;Parent=Phyra53774;rank=2 scaffold_839 . exon 6697 7223 . - . ID=Phyra53774.2;Parent=Phyra53774;constitutive=1;ensembl_phase=1;rank=2 scaffold_839 . CDS 7560 7950 . - 0 ID=Phyra53774;Parent=Phyra53774;rank=1 scaffold_839 . exon 7560 7950 . - . ID=Phyra53774.1;Parent=Phyra53774;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_842 1 8465 scaffold_842 . repeat_region 836 856 . ? . description=trf scaffold_842 . repeat_region 1784 3159 . ? . description=dust scaffold_842 . repeat_region 3966 7541 . ? . description=dust scaffold_842 . repeat_region 8061 8117 . ? . description=trf scaffold_842 . repeat_region 8391 8464 . ? . description=dust scaffold_842 . repeat_region 8405 8465 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_836 1 8471 scaffold_836 . repeat_region 985 1010 . ? . description=trf scaffold_836 . repeat_region 1116 6915 . ? . description=dust scaffold_836 . repeat_region 6946 8471 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_835 1 8474 scaffold_835 . repeat_region 1139 6830 . ? . description=dust scaffold_835 ensembl protein_coding_gene 7135 7659 . + . ID=Phyra86566;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_835000001;logic_name=jgi_phyra1 scaffold_835 ensembl transcript 7135 7659 . + . ID=Phyra86566;Parent=Phyra86566;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_835 . CDS 7135 7659 . + 0 ID=Phyra86566;Parent=Phyra86566;rank=1 scaffold_835 . exon 7135 7659 . + . ID=Phyra86566.1;Parent=Phyra86566;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_834 1 8476 scaffold_834 . repeat_region 1700 7227 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_837 1 8476 scaffold_837 . repeat_region 255 297 . ? . description=trf scaffold_837 . repeat_region 1109 1130 . ? . description=trf scaffold_837 . repeat_region 1492 7298 . ? . description=dust scaffold_837 . repeat_region 8123 8165 . ? . description=trf scaffold_837 . repeat_region 8263 8309 . ? . description=trf scaffold_837 ensembl protein_coding_gene 467 8111 . - . ID=Phyra86567;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_837000001;logic_name=jgi_phyra1 scaffold_837 ensembl transcript 467 8111 . - . ID=Phyra86567;Parent=Phyra86567;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_837 . CDS 467 787 . - 0 ID=Phyra86567;Parent=Phyra86567;rank=5 scaffold_837 . exon 467 787 . - . ID=Phyra86567.5;Parent=Phyra86567;constitutive=1;rank=5 scaffold_837 . CDS 807 1447 . - 0 ID=Phyra86567;Parent=Phyra86567;rank=4 scaffold_837 . exon 807 1447 . - . ID=Phyra86567.4;Parent=Phyra86567;constitutive=1;ensembl_phase=1;rank=4 scaffold_837 . CDS 7366 7432 . - 0 ID=Phyra86567;Parent=Phyra86567;rank=3 scaffold_837 . exon 7366 7432 . - . ID=Phyra86567.3;Parent=Phyra86567;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_837 . CDS 7493 8028 . - 0 ID=Phyra86567;Parent=Phyra86567;rank=2 scaffold_837 . exon 7493 8028 . - . ID=Phyra86567.2;Parent=Phyra86567;constitutive=1;ensembl_phase=1;rank=2 scaffold_837 . CDS 8087 8111 . - 0 ID=Phyra86567;Parent=Phyra86567;rank=1 scaffold_837 . exon 8087 8111 . - . ID=Phyra86567.1;Parent=Phyra86567;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_833 1 8477 scaffold_833 . repeat_region 1529 7197 . ? . description=dust scaffold_833 . repeat_region 8178 8477 . ? . description=trf scaffold_833 ensembl protein_coding_gene 7211 8073 . + . ID=Phyra53754;biotype=protein_coding;external_name=gwEuk.833.4.1;logic_name=jgi_phyra1 scaffold_833 ensembl transcript 7211 8073 . + . ID=Phyra53754;Parent=Phyra53754;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_833 . CDS 7211 7292 . + 0 ID=Phyra53754;Parent=Phyra53754;rank=1 scaffold_833 . exon 7211 7292 . + . ID=Phyra53754.1;Parent=Phyra53754;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_833 . CDS 7328 8073 . + 0 ID=Phyra53754;Parent=Phyra53754;rank=2 scaffold_833 . exon 7328 8073 . + . ID=Phyra53754.2;Parent=Phyra53754;constitutive=1;ensembl_phase=1;rank=2 scaffold_833 ensembl protein_coding_gene 5 1116 . + . ID=Phyra53760;biotype=protein_coding;external_name=gwEuk.833.10.1;logic_name=jgi_phyra1 scaffold_833 ensembl transcript 5 1116 . + . ID=Phyra53760;Parent=Phyra53760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_833 . CDS 5 335 . + 0 ID=Phyra53760;Parent=Phyra53760;rank=1 scaffold_833 . exon 5 335 . + . ID=Phyra53760.1;Parent=Phyra53760;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_833 . CDS 371 1116 . + 0 ID=Phyra53760;Parent=Phyra53760;rank=2 scaffold_833 . exon 371 1116 . + . ID=Phyra53760.2;Parent=Phyra53760;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_896 1 8477 scaffold_896 . repeat_region 1037 2733 . ? . description=dust scaffold_896 . repeat_region 3039 3308 . - . description=Polinton-1_PI scaffold_896 . repeat_region 3386 3564 . + . description=Polinton-1_PI scaffold_896 . repeat_region 3526 3533 . ? . description=dust scaffold_896 . biological_region 3660 3660 0.999 + . logic_name=eponine scaffold_896 . repeat_region 4131 7096 . ? . description=dust scaffold_896 . repeat_region 7372 8477 . - . description=GypsyPi-1c_I-int scaffold_896 ensembl protein_coding_gene 28 429 . - . ID=Phyra54167;biotype=protein_coding;external_name=gwEuk.896.1.1;logic_name=jgi_phyra1 scaffold_896 ensembl transcript 28 429 . - . ID=Phyra54167;Parent=Phyra54167;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_896 . CDS 28 429 . - 0 ID=Phyra54167;Parent=Phyra54167;rank=1 scaffold_896 . exon 28 429 . - . ID=Phyra54167.1;Parent=Phyra54167;constitutive=1;rank=1 scaffold_896 ensembl protein_coding_gene 2870 3206 . - . ID=Phyra86602;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_896000001;logic_name=jgi_phyra1 scaffold_896 ensembl transcript 2870 3206 . - . ID=Phyra86602;Parent=Phyra86602;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_896 . CDS 2870 2962 . - 0 ID=Phyra86602;Parent=Phyra86602;rank=2 scaffold_896 . exon 2870 2962 . - . ID=Phyra86602.2;Parent=Phyra86602;constitutive=1;rank=2 scaffold_896 . CDS 2997 3206 . - 0 ID=Phyra86602;Parent=Phyra86602;rank=1 scaffold_896 . exon 2997 3206 . - . ID=Phyra86602.1;Parent=Phyra86602;constitutive=1;rank=1 scaffold_896 ensembl protein_coding_gene 7642 8413 . - . ID=Phyra86603;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_896000002;logic_name=jgi_phyra1 scaffold_896 ensembl transcript 7642 8413 . - . ID=Phyra86603;Parent=Phyra86603;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_896 . CDS 7642 7680 . - 0 ID=Phyra86603;Parent=Phyra86603;rank=4 scaffold_896 . exon 7642 7680 . - . ID=Phyra86603.4;Parent=Phyra86603;constitutive=1;rank=4 scaffold_896 . CDS 7739 7948 . - 0 ID=Phyra86603;Parent=Phyra86603;rank=3 scaffold_896 . exon 7739 7948 . - . ID=Phyra86603.3;Parent=Phyra86603;constitutive=1;rank=3 scaffold_896 . CDS 7991 8171 . - 0 ID=Phyra86603;Parent=Phyra86603;rank=2 scaffold_896 . exon 7991 8171 . - . ID=Phyra86603.2;Parent=Phyra86603;constitutive=1;ensembl_phase=2;rank=2 scaffold_896 . CDS 8244 8413 . - 0 ID=Phyra86603;Parent=Phyra86603;rank=1 scaffold_896 . exon 8244 8413 . - . ID=Phyra86603.1;Parent=Phyra86603;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_832 1 8480 scaffold_832 . repeat_region 2246 7504 . ? . description=dust scaffold_832 . repeat_region 7505 8480 . + . description=GypsyPi-1c_I-int scaffold_832 ensembl protein_coding_gene 7658 8332 . + . ID=Phyra86563;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_832000001;logic_name=jgi_phyra1 scaffold_832 ensembl transcript 7658 8332 . + . ID=Phyra86563;Parent=Phyra86563;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_832 . CDS 7658 8080 . + 0 ID=Phyra86563;Parent=Phyra86563;rank=1 scaffold_832 . exon 7658 8080 . + . ID=Phyra86563.1;Parent=Phyra86563;constitutive=1;rank=1 scaffold_832 . CDS 8123 8332 . + 0 ID=Phyra86563;Parent=Phyra86563;rank=2 scaffold_832 . exon 8123 8332 . + . ID=Phyra86563.2;Parent=Phyra86563;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_830 1 8488 scaffold_830 . biological_region 28 29 0.999 + . logic_name=eponine scaffold_830 . biological_region 78 79 0.999 + . logic_name=eponine scaffold_830 . repeat_region 1268 6542 . ? . description=dust scaffold_830 . biological_region 6623 6628 0.999 + . logic_name=eponine scaffold_830 ensembl protein_coding_gene 529 7276 . - . ID=Phyra86561;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_830000001;logic_name=jgi_phyra1 scaffold_830 ensembl transcript 529 7276 . - . ID=Phyra86561;Parent=Phyra86561;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_830 . CDS 529 870 . - 0 ID=Phyra86561;Parent=Phyra86561;rank=3 scaffold_830 . exon 529 870 . - . ID=Phyra86561.3;Parent=Phyra86561;constitutive=1;rank=3 scaffold_830 . CDS 911 1240 . - 0 ID=Phyra86561;Parent=Phyra86561;rank=2 scaffold_830 . exon 911 1240 . - . ID=Phyra86561.2;Parent=Phyra86561;constitutive=1;rank=2 scaffold_830 . CDS 6548 7276 . - 0 ID=Phyra86561;Parent=Phyra86561;rank=1 scaffold_830 . exon 6548 7276 . - . ID=Phyra86561.1;Parent=Phyra86561;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_829 1 8491 scaffold_829 . repeat_region 1981 7150 . ? . description=dust scaffold_829 ensembl protein_coding_gene 7215 7787 . - . ID=Phyra53694;biotype=protein_coding;external_name=gwEuk.829.2.1;logic_name=jgi_phyra1 scaffold_829 ensembl transcript 7215 7787 . - . ID=Phyra53694;Parent=Phyra53694;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_829 . CDS 7215 7787 . - 0 ID=Phyra53694;Parent=Phyra53694;rank=1 scaffold_829 . exon 7215 7787 . - . ID=Phyra53694.1;Parent=Phyra53694;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_825 1 8498 scaffold_825 . repeat_region 1414 6958 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_826 1 8498 scaffold_826 . repeat_region 1594 2298 . ? . description=dust scaffold_826 . repeat_region 3890 7462 . ? . description=dust scaffold_826 . repeat_region 7736 7783 . ? . description=dust scaffold_826 ensembl protein_coding_gene 2553 3812 . - . ID=Phyra72435;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_826000001;logic_name=jgi_phyra1 scaffold_826 ensembl transcript 2553 3812 . - . ID=Phyra72435;Parent=Phyra72435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_826 . CDS 2553 3812 . - 0 ID=Phyra72435;Parent=Phyra72435;rank=1 scaffold_826 . exon 2553 3812 . - . ID=Phyra72435.1;Parent=Phyra72435;constitutive=1;rank=1 scaffold_826 ensembl protein_coding_gene 7582 8472 . + . ID=Phyra86559;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_826000002;logic_name=jgi_phyra1 scaffold_826 ensembl transcript 7582 8472 . + . ID=Phyra86559;Parent=Phyra86559;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_826 . CDS 7582 8472 . + 0 ID=Phyra86559;Parent=Phyra86559;rank=1 scaffold_826 . exon 7582 8472 . + . ID=Phyra86559.1;Parent=Phyra86559;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_824 1 8508 scaffold_824 . repeat_region 1591 7226 . ? . description=dust scaffold_824 . repeat_region 7312 8494 . - . description=GypsyPi-1c_I-int scaffold_824 ensembl pseudogene 7433 7824 . - . ID=Phyra53688;biotype=pseudogene;external_name=gwEuk.824.3.1;logic_name=jgi_phyra1 scaffold_824 ensembl pseudogene 7433 7824 . - . ID=Phyra53688;Parent=Phyra53688;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_824 . exon 7433 7824 . - . ID=Phyra53688.1;Parent=Phyra53688;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_812 1 8510 scaffold_812 . repeat_region 1864 3709 . ? . description=dust scaffold_812 . biological_region 3909 3914 0.999 + . logic_name=eponine scaffold_812 . biological_region 3964 3966 0.999 + . logic_name=eponine scaffold_812 . repeat_region 4445 6721 . + . description=GypsyPi-1c_I-int scaffold_812 . repeat_region 7089 7310 . + . description=GypsyPi-1c_I-int scaffold_812 . biological_region 8259 8262 0.999 + . logic_name=eponine scaffold_812 . biological_region 8352 8353 0.999 - . logic_name=eponine scaffold_812 ensembl protein_coding_gene 4160 5755 . + . ID=Phyra86551;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_812000001;logic_name=jgi_phyra1 scaffold_812 ensembl transcript 4160 5755 . + . ID=Phyra86551;Parent=Phyra86551;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_812 . CDS 4160 5146 . + 0 ID=Phyra86551;Parent=Phyra86551;rank=1 scaffold_812 . exon 4160 5146 . + . ID=Phyra86551.1;Parent=Phyra86551;constitutive=1;rank=1 scaffold_812 . CDS 5189 5398 . + 0 ID=Phyra86551;Parent=Phyra86551;rank=2 scaffold_812 . exon 5189 5398 . + . ID=Phyra86551.2;Parent=Phyra86551;constitutive=1;rank=2 scaffold_812 . CDS 5702 5755 . + 0 ID=Phyra86551;Parent=Phyra86551;rank=3 scaffold_812 . exon 5702 5755 . + . ID=Phyra86551.3;Parent=Phyra86551;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_859 1 8511 scaffold_859 . repeat_region 1032 1039 . ? . description=dust scaffold_859 . repeat_region 1507 7704 . ? . description=dust scaffold_859 . repeat_region 8431 8440 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_841 1 8513 scaffold_841 . repeat_region 8 786 . - . description=GypsyPi-1c_I-int scaffold_841 . repeat_region 851 901 . ? . description=dust scaffold_841 . repeat_region 998 3188 . - . description=GypsyPi-1c_I-int scaffold_841 . repeat_region 3189 6978 . ? . description=dust scaffold_841 ensembl protein_coding_gene 1165 2052 . - . ID=Phyra86570;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_841000001;logic_name=jgi_phyra1 scaffold_841 ensembl transcript 1165 2052 . - . ID=Phyra86570;Parent=Phyra86570;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_841 . CDS 1165 1548 . - 0 ID=Phyra86570;Parent=Phyra86570;rank=2 scaffold_841 . exon 1165 1548 . - . ID=Phyra86570.2;Parent=Phyra86570;constitutive=1;rank=2 scaffold_841 . CDS 1624 2052 . - 0 ID=Phyra86570;Parent=Phyra86570;rank=1 scaffold_841 . exon 1624 2052 . - . ID=Phyra86570.1;Parent=Phyra86570;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_823 1 8515 scaffold_823 . repeat_region 2687 3079 . ? . description=dust scaffold_823 . repeat_region 3366 3505 . + . description=Gypsy-1-I_PI-int scaffold_823 . repeat_region 4517 4735 . + . description=Gypsy-1-I_PI-int scaffold_823 . biological_region 5478 5482 0.999 - . logic_name=eponine scaffold_823 . repeat_region 5771 6549 . ? . description=dust scaffold_823 . repeat_region 6953 7519 . + . description=GypsyPi-1c_I-int scaffold_823 . repeat_region 8251 8513 . + . description=GypsyPi-1c_I-int scaffold_823 ensembl protein_coding_gene 6560 8481 . + . ID=Phyra86557;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_823000001;logic_name=jgi_phyra1 scaffold_823 ensembl transcript 6560 8481 . + . ID=Phyra86557;Parent=Phyra86557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_823 . CDS 6560 6865 . + 0 ID=Phyra86557;Parent=Phyra86557;rank=1 scaffold_823 . exon 6560 6865 . + . ID=Phyra86557.1;Parent=Phyra86557;constitutive=1;rank=1 scaffold_823 . CDS 7036 7717 . + 0 ID=Phyra86557;Parent=Phyra86557;rank=2 scaffold_823 . exon 7036 7717 . + . ID=Phyra86557.2;Parent=Phyra86557;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_823 . CDS 7883 8481 . + 0 ID=Phyra86557;Parent=Phyra86557;rank=3 scaffold_823 . exon 7883 8481 . + . ID=Phyra86557.3;Parent=Phyra86557;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_821 1 8517 scaffold_821 . repeat_region 1436 7400 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_822 1 8517 scaffold_822 . biological_region 988 990 0.999 - . logic_name=eponine scaffold_822 . repeat_region 1665 7244 . ? . description=dust scaffold_822 ensembl protein_coding_gene 105 1319 . - . ID=Phyra86556;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_822000001;logic_name=jgi_phyra1 scaffold_822 ensembl transcript 105 1319 . - . ID=Phyra86556;Parent=Phyra86556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_822 . CDS 105 1319 . - 0 ID=Phyra86556;Parent=Phyra86556;rank=1 scaffold_822 . exon 105 1319 . - . ID=Phyra86556.1;Parent=Phyra86556;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_858 1 8519 scaffold_858 . biological_region 599 602 0.999 - . logic_name=eponine scaffold_858 . repeat_region 682 707 . ? . description=trf scaffold_858 . repeat_region 1051 4891 . ? . description=dust scaffold_858 . repeat_region 5791 7002 . ? . description=dust scaffold_858 . repeat_region 7186 7195 . ? . description=dust scaffold_858 ensembl protein_coding_gene 7544 8405 . + . ID=Phyra86583;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_858000001;logic_name=jgi_phyra1 scaffold_858 ensembl transcript 7544 8405 . + . ID=Phyra86583;Parent=Phyra86583;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_858 . CDS 7544 7847 . + 0 ID=Phyra86583;Parent=Phyra86583;rank=1 scaffold_858 . exon 7544 7847 . + . ID=Phyra86583.1;Parent=Phyra86583;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_858 . CDS 7912 8288 . + 0 ID=Phyra86583;Parent=Phyra86583;rank=2 scaffold_858 . exon 7912 8288 . + . ID=Phyra86583.2;Parent=Phyra86583;constitutive=1;ensembl_phase=1;rank=2 scaffold_858 . CDS 8343 8405 . + 0 ID=Phyra86583;Parent=Phyra86583;rank=3 scaffold_858 . exon 8343 8405 . + . ID=Phyra86583.3;Parent=Phyra86583;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_797 1 8520 scaffold_797 . repeat_region 887 3901 . ? . description=dust scaffold_797 . biological_region 5684 5689 0.999 + . logic_name=eponine scaffold_797 . biological_region 6611 6614 0.999 - . logic_name=eponine scaffold_797 . repeat_region 7618 7644 . ? . description=trf scaffold_797 . repeat_region 8369 8406 . ? . description=trf scaffold_797 ensembl protein_coding_gene 1 875 . + . ID=Phyra86539;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_797000001;logic_name=jgi_phyra1 scaffold_797 ensembl transcript 1 875 . + . ID=Phyra86539;Parent=Phyra86539;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_797 . exon 1 798 . + . ID=Phyra86539.1;Parent=Phyra86539;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_797 . CDS 2 798 . + 0 ID=Phyra86539;Parent=Phyra86539;rank=1 scaffold_797 . CDS 869 875 . + 0 ID=Phyra86539;Parent=Phyra86539;rank=2 scaffold_797 . exon 869 875 . + . ID=Phyra86539.2;Parent=Phyra86539;constitutive=1;ensembl_phase=2;rank=2 scaffold_797 ensembl protein_coding_gene 4240 8130 . + . ID=Phyra86540;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_797000002;logic_name=jgi_phyra1 scaffold_797 ensembl transcript 4240 8130 . + . ID=Phyra86540;Parent=Phyra86540;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_797 . CDS 4240 8130 . + 0 ID=Phyra86540;Parent=Phyra86540;rank=1 scaffold_797 . exon 4240 8130 . + . ID=Phyra86540.1;Parent=Phyra86540;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_817 1 8523 scaffold_817 . repeat_region 286 293 . ? . description=dust scaffold_817 . repeat_region 1454 6804 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_816 1 8525 scaffold_816 . repeat_region 1466 6735 . ? . description=dust scaffold_816 ensembl protein_coding_gene 18 773 . + . ID=Phyra86552;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_816000001;logic_name=jgi_phyra1 scaffold_816 ensembl transcript 18 773 . + . ID=Phyra86552;Parent=Phyra86552;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_816 . CDS 18 773 . + 0 ID=Phyra86552;Parent=Phyra86552;rank=1 scaffold_816 . exon 18 773 . + . ID=Phyra86552.1;Parent=Phyra86552;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_814 1 8529 scaffold_814 . biological_region 408 410 0.999 + . logic_name=eponine scaffold_814 . repeat_region 1372 7217 . ? . description=dust scaffold_814 . biological_region 7428 7435 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_811 1 8537 scaffold_811 . repeat_region 609 748 . + . description=Gypsy-1-I_PI-int scaffold_811 . repeat_region 1786 7540 . ? . description=dust scaffold_811 ensembl protein_coding_gene 7620 8465 . - . ID=Phyra86550;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_811000001;logic_name=jgi_phyra1 scaffold_811 ensembl transcript 7620 8465 . - . ID=Phyra86550;Parent=Phyra86550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_811 . CDS 7620 7716 . - 0 ID=Phyra86550;Parent=Phyra86550;rank=3 scaffold_811 . exon 7620 7716 . - . ID=Phyra86550.3;Parent=Phyra86550;constitutive=1;ensembl_phase=2;rank=3 scaffold_811 . CDS 7769 7894 . - 0 ID=Phyra86550;Parent=Phyra86550;rank=2 scaffold_811 . exon 7769 7894 . - . ID=Phyra86550.2;Parent=Phyra86550;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_811 . CDS 7919 8463 . - 0 ID=Phyra86550;Parent=Phyra86550;rank=1 scaffold_811 . exon 7919 8465 . - . ID=Phyra86550.1;Parent=Phyra86550;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_810 1 8539 scaffold_810 . repeat_region 1525 6572 . ? . description=dust scaffold_810 ensembl protein_coding_gene 7647 8534 . + . ID=Phyra86549;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_810000001;logic_name=jgi_phyra1 scaffold_810 ensembl transcript 7647 8534 . + . ID=Phyra86549;Parent=Phyra86549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_810 . CDS 7647 8534 . + 0 ID=Phyra86549;Parent=Phyra86549;rank=1 scaffold_810 . exon 7647 8534 . + . ID=Phyra86549.1;Parent=Phyra86549;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_809 1 8543 scaffold_809 . biological_region 1100 1102 0.999 - . logic_name=eponine scaffold_809 . repeat_region 1669 7741 . ? . description=dust scaffold_809 ensembl protein_coding_gene 7742 8449 . - . ID=Phyra53557;biotype=protein_coding;external_name=gwEuk.809.2.1;logic_name=jgi_phyra1 scaffold_809 ensembl transcript 7742 8449 . - . ID=Phyra53557;Parent=Phyra53557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_809 . CDS 7742 7779 . - 0 ID=Phyra53557;Parent=Phyra53557;rank=4 scaffold_809 . exon 7742 7779 . - . ID=Phyra53557.4;Parent=Phyra53557;constitutive=1;ensembl_phase=1;rank=4 scaffold_809 . CDS 7856 8126 . - 0 ID=Phyra53557;Parent=Phyra53557;rank=3 scaffold_809 . exon 7856 8126 . - . ID=Phyra53557.3;Parent=Phyra53557;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_809 . CDS 8201 8284 . - 0 ID=Phyra53557;Parent=Phyra53557;rank=2 scaffold_809 . exon 8201 8284 . - . ID=Phyra53557.2;Parent=Phyra53557;constitutive=1;rank=2 scaffold_809 . CDS 8357 8449 . - 0 ID=Phyra53557;Parent=Phyra53557;rank=1 scaffold_809 . exon 8357 8449 . - . ID=Phyra53557.1;Parent=Phyra53557;constitutive=1;rank=1 scaffold_809 ensembl protein_coding_gene 1283 1669 . - . ID=Phyra53560;biotype=protein_coding;external_name=gwEuk.809.5.1;logic_name=jgi_phyra1 scaffold_809 ensembl transcript 1283 1669 . - . ID=Phyra53560;Parent=Phyra53560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_809 . CDS 1283 1669 . - 0 ID=Phyra53560;Parent=Phyra53560;rank=1 scaffold_809 . exon 1283 1669 . - . ID=Phyra53560.1;Parent=Phyra53560;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_813 1 8549 scaffold_813 . repeat_region 1320 7641 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_807 1 8552 scaffold_807 . biological_region 973 974 0.999 - . logic_name=eponine scaffold_807 . repeat_region 1271 7538 . ? . description=dust scaffold_807 ensembl protein_coding_gene 7598 8192 . - . ID=Phyra53546;biotype=protein_coding;external_name=gwEuk.807.4.1;logic_name=jgi_phyra1 scaffold_807 ensembl transcript 7598 8192 . - . ID=Phyra53546;Parent=Phyra53546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_807 . CDS 7598 8192 . - 0 ID=Phyra53546;Parent=Phyra53546;rank=1 scaffold_807 . exon 7598 8192 . - . ID=Phyra53546.1;Parent=Phyra53546;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_807 ensembl protein_coding_gene 8316 8486 . - . ID=Phyra53548;biotype=protein_coding;external_name=gwEuk.807.6.1;logic_name=jgi_phyra1 scaffold_807 ensembl transcript 8316 8486 . - . ID=Phyra53548;Parent=Phyra53548;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_807 . CDS 8316 8486 . - 0 ID=Phyra53548;Parent=Phyra53548;rank=1 scaffold_807 . exon 8316 8486 . - . ID=Phyra53548.1;Parent=Phyra53548;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_808 1 8553 scaffold_808 . repeat_region 1346 6866 . ? . description=dust scaffold_808 . biological_region 8463 8466 0.999 - . logic_name=eponine scaffold_808 ensembl protein_coding_gene 8299 8553 . + . ID=Phyra53550;biotype=protein_coding;external_name=gwEuk.808.2.1;logic_name=jgi_phyra1 scaffold_808 ensembl transcript 8299 8553 . + . ID=Phyra53550;Parent=Phyra53550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_808 . CDS 8299 8553 . + 0 ID=Phyra53550;Parent=Phyra53550;rank=1 scaffold_808 . exon 8299 8553 . + . ID=Phyra53550.1;Parent=Phyra53550;constitutive=1;rank=1 scaffold_808 ensembl pseudogene 28 1338 . - . ID=Phyra53551;biotype=pseudogene;external_name=gwEuk.808.3.1;logic_name=jgi_phyra1 scaffold_808 ensembl pseudogene 28 1338 . - . ID=Phyra53551;Parent=Phyra53551;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_808 . exon 28 1338 . - . ID=Phyra53551.1;Parent=Phyra53551;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_806 1 8555 scaffold_806 . repeat_region 1648 7242 . ? . description=dust scaffold_806 . repeat_region 7358 7400 . ? . description=trf scaffold_806 . repeat_region 7688 7735 . ? . description=dust scaffold_806 . repeat_region 7688 7743 . ? . description=trf scaffold_806 ensembl protein_coding_gene 1526 1642 . - . ID=Phyra53540;biotype=protein_coding;external_name=gwEuk.806.1.1;logic_name=jgi_phyra1 scaffold_806 ensembl transcript 1526 1642 . - . ID=Phyra53540;Parent=Phyra53540;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_806 . CDS 1526 1642 . - 0 ID=Phyra53540;Parent=Phyra53540;rank=1 scaffold_806 . exon 1526 1642 . - . ID=Phyra53540.1;Parent=Phyra53540;constitutive=1;rank=1 scaffold_806 ensembl protein_coding_gene 521 1522 . - . ID=Phyra86545;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_806000001;logic_name=jgi_phyra1 scaffold_806 ensembl transcript 521 1522 . - . ID=Phyra86545;Parent=Phyra86545;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_806 . CDS 521 1522 . - 0 ID=Phyra86545;Parent=Phyra86545;rank=1 scaffold_806 . exon 521 1522 . - . ID=Phyra86545.1;Parent=Phyra86545;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_805 1 8557 scaffold_805 . repeat_region 9 634 . + . description=GypsyPi-1c_I-int scaffold_805 . repeat_region 889 1167 . + . description=GypsyPi-1c_I-int scaffold_805 . biological_region 1242 1243 0.999 - . logic_name=eponine scaffold_805 . repeat_region 1406 6955 . ? . description=dust scaffold_805 . repeat_region 8145 8182 . ? . description=trf scaffold_805 ensembl protein_coding_gene 259 513 . + . ID=Phyra53539;biotype=protein_coding;external_name=gwEuk.805.2.1;logic_name=jgi_phyra1 scaffold_805 ensembl transcript 259 513 . + . ID=Phyra53539;Parent=Phyra53539;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_805 . CDS 259 513 . + 0 ID=Phyra53539;Parent=Phyra53539;rank=1 scaffold_805 . exon 259 513 . + . ID=Phyra53539.1;Parent=Phyra53539;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_827 1 8559 scaffold_827 . repeat_region 678 1161 . - . description=Sola3-2_PS scaffold_827 . repeat_region 1184 7402 . ? . description=dust scaffold_827 . biological_region 7922 7929 0.999 - . logic_name=eponine scaffold_827 . biological_region 8109 8112 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_801 1 8560 scaffold_801 . repeat_region 178 199 . ? . description=trf scaffold_801 . repeat_region 1273 7351 . ? . description=dust scaffold_801 . biological_region 7470 7471 0.999 - . logic_name=eponine scaffold_801 . repeat_region 7607 7620 . ? . description=dust scaffold_801 . repeat_region 8376 8417 . ? . description=trf scaffold_801 ensembl protein_coding_gene 9 955 . - . ID=Phyra86542;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_801000001;logic_name=jgi_phyra1 scaffold_801 ensembl transcript 9 955 . - . ID=Phyra86542;Parent=Phyra86542;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_801 . CDS 9 955 . - 0 ID=Phyra86542;Parent=Phyra86542;rank=1 scaffold_801 . exon 9 955 . - . ID=Phyra86542.1;Parent=Phyra86542;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_804 1 8560 scaffold_804 . repeat_region 1607 7183 . ? . description=dust scaffold_804 ensembl protein_coding_gene 7189 7518 . - . ID=Phyra53537;biotype=protein_coding;external_name=gwEuk.804.2.1;logic_name=jgi_phyra1 scaffold_804 ensembl transcript 7189 7518 . - . ID=Phyra53537;Parent=Phyra53537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_804 . CDS 7189 7518 . - 0 ID=Phyra53537;Parent=Phyra53537;rank=1 scaffold_804 . exon 7189 7518 . - . ID=Phyra53537.1;Parent=Phyra53537;constitutive=1;rank=1 scaffold_804 ensembl protein_coding_gene 95 1341 . + . ID=Phyra86544;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_804000001;logic_name=jgi_phyra1 scaffold_804 ensembl transcript 95 1341 . + . ID=Phyra86544;Parent=Phyra86544;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_804 . exon 95 1341 . + . ID=Phyra86544.1;Parent=Phyra86544;constitutive=1;ensembl_phase=-1;rank=1 scaffold_804 . CDS 97 1341 . + 0 ID=Phyra86544;Parent=Phyra86544;rank=1 ##gff-version 3 ##sequence-region scaffold_803 1 8561 scaffold_803 . repeat_region 189 345 . + . description=Polinton-1_PI scaffold_803 . repeat_region 525 1181 . + . description=Polinton-1_PI scaffold_803 . repeat_region 1284 7252 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_802 1 8562 scaffold_802 . repeat_region 1733 2560 . ? . description=dust scaffold_802 . biological_region 3811 3814 0.999 + . logic_name=eponine scaffold_802 . repeat_region 3916 3963 . ? . description=trf scaffold_802 . repeat_region 3926 3966 . ? . description=trf scaffold_802 . repeat_region 3962 4028 . ? . description=trf scaffold_802 . repeat_region 3978 4028 . ? . description=trf scaffold_802 . repeat_region 4032 7115 . ? . description=dust scaffold_802 . repeat_region 7438 7519 . ? . description=trf scaffold_802 . repeat_region 7439 7519 . ? . description=trf scaffold_802 . repeat_region 7447 7519 . ? . description=trf scaffold_802 . repeat_region 7450 7519 . ? . description=trf scaffold_802 ensembl protein_coding_gene 7253 8122 . - . ID=Phyra86543;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_802000001;logic_name=jgi_phyra1 scaffold_802 ensembl transcript 7253 8122 . - . ID=Phyra86543;Parent=Phyra86543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_802 . CDS 7253 7265 . - 0 ID=Phyra86543;Parent=Phyra86543;rank=6 scaffold_802 . exon 7253 7265 . - . ID=Phyra86543.6;Parent=Phyra86543;constitutive=1;ensembl_phase=2;rank=6 scaffold_802 . CDS 7306 7368 . - 0 ID=Phyra86543;Parent=Phyra86543;rank=5 scaffold_802 . exon 7306 7368 . - . ID=Phyra86543.5;Parent=Phyra86543;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_802 . CDS 7428 7561 . - 0 ID=Phyra86543;Parent=Phyra86543;rank=4 scaffold_802 . exon 7428 7561 . - . ID=Phyra86543.4;Parent=Phyra86543;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_802 . CDS 7694 7745 . - 0 ID=Phyra86543;Parent=Phyra86543;rank=3 scaffold_802 . exon 7694 7745 . - . ID=Phyra86543.3;Parent=Phyra86543;constitutive=1;ensembl_phase=2;rank=3 scaffold_802 . CDS 7772 7875 . - 0 ID=Phyra86543;Parent=Phyra86543;rank=2 scaffold_802 . exon 7772 7875 . - . ID=Phyra86543.2;Parent=Phyra86543;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_802 . CDS 8093 8122 . - 0 ID=Phyra86543;Parent=Phyra86543;rank=1 scaffold_802 . exon 8093 8122 . - . ID=Phyra86543.1;Parent=Phyra86543;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_799 1 8564 scaffold_799 . repeat_region 1566 5363 . ? . description=dust scaffold_799 . biological_region 5608 5611 0.999 - . logic_name=eponine scaffold_799 . repeat_region 5987 6016 . ? . description=trf scaffold_799 . repeat_region 6381 6478 . ? . description=trf scaffold_799 . repeat_region 6904 6936 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_800 1 8567 scaffold_800 . repeat_region 1249 7156 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_851 1 8567 scaffold_851 . biological_region 1150 1153 0.999 + . logic_name=eponine scaffold_851 . repeat_region 1496 4704 . ? . description=dust scaffold_851 . repeat_region 4708 5284 . + . description=GypsyPi-1c_I-int scaffold_851 . repeat_region 5819 6933 . ? . description=dust scaffold_851 . repeat_region 7191 7220 . ? . description=trf scaffold_851 . biological_region 7813 7815 0.999 + . logic_name=eponine scaffold_851 ensembl protein_coding_gene 5040 5255 . + . ID=Phyra53878;biotype=protein_coding;external_name=gwEuk.851.1.1;logic_name=jgi_phyra1 scaffold_851 ensembl transcript 5040 5255 . + . ID=Phyra53878;Parent=Phyra53878;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_851 . CDS 5040 5255 . + 0 ID=Phyra53878;Parent=Phyra53878;rank=1 scaffold_851 . exon 5040 5255 . + . ID=Phyra53878.1;Parent=Phyra53878;constitutive=1;rank=1 scaffold_851 ensembl protein_coding_gene 7048 8558 . + . ID=Phyra86577;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_851000001;logic_name=jgi_phyra1 scaffold_851 ensembl transcript 7048 8558 . + . ID=Phyra86577;Parent=Phyra86577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_851 . CDS 7048 8558 . + 0 ID=Phyra86577;Parent=Phyra86577;rank=1 scaffold_851 . exon 7048 8558 . + . ID=Phyra86577.1;Parent=Phyra86577;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_798 1 8572 scaffold_798 . repeat_region 1218 1260 . ? . description=trf scaffold_798 . repeat_region 2014 7698 . ? . description=dust scaffold_798 ensembl protein_coding_gene 9 1670 . - . ID=Phyra86541;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_798000001;logic_name=jgi_phyra1 scaffold_798 ensembl transcript 9 1670 . - . ID=Phyra86541;Parent=Phyra86541;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_798 . CDS 9 1178 . - 0 ID=Phyra86541;Parent=Phyra86541;rank=2 scaffold_798 . exon 9 1178 . - . ID=Phyra86541.2;Parent=Phyra86541;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_798 . CDS 1315 1670 . - 0 ID=Phyra86541;Parent=Phyra86541;rank=1 scaffold_798 . exon 1315 1670 . - . ID=Phyra86541.1;Parent=Phyra86541;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_796 1 8580 scaffold_796 . repeat_region 345 1366 . - . description=GypsyPi-1c_I-int scaffold_796 . repeat_region 1368 1452 . ? . description=dust scaffold_796 . biological_region 1966 1971 0.999 - . logic_name=eponine scaffold_796 . biological_region 2006 2007 0.999 + . logic_name=eponine scaffold_796 . biological_region 2068 2073 0.999 - . logic_name=eponine scaffold_796 . repeat_region 2456 2547 . - . description=GypsyPi-1c_I-int scaffold_796 . biological_region 3623 3627 0.999 - . logic_name=eponine scaffold_796 . repeat_region 3733 3904 . ? . description=dust scaffold_796 . repeat_region 5654 5691 . ? . description=dust scaffold_796 . repeat_region 5729 5764 . ? . description=trf scaffold_796 . biological_region 6229 6229 0.999 + . logic_name=eponine scaffold_796 . biological_region 6285 6288 0.999 - . logic_name=eponine scaffold_796 . biological_region 6286 6287 0.999 + . logic_name=eponine scaffold_796 . biological_region 6291 6294 0.999 - . logic_name=eponine scaffold_796 . repeat_region 6971 6978 . ? . description=dust scaffold_796 ensembl protein_coding_gene 15 2079 . - . ID=Phyra86537;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_796000001;logic_name=jgi_phyra1 scaffold_796 ensembl transcript 15 2079 . - . ID=Phyra86537;Parent=Phyra86537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_796 . CDS 15 408 . - 0 ID=Phyra86537;Parent=Phyra86537;rank=4 scaffold_796 . exon 15 408 . - . ID=Phyra86537.4;Parent=Phyra86537;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_796 . CDS 712 921 . - 0 ID=Phyra86537;Parent=Phyra86537;rank=3 scaffold_796 . exon 712 921 . - . ID=Phyra86537.3;Parent=Phyra86537;constitutive=1;rank=3 scaffold_796 . CDS 985 1332 . - 0 ID=Phyra86537;Parent=Phyra86537;rank=2 scaffold_796 . exon 985 1332 . - . ID=Phyra86537.2;Parent=Phyra86537;constitutive=1;rank=2 scaffold_796 . CDS 1477 2079 . - 0 ID=Phyra86537;Parent=Phyra86537;rank=1 scaffold_796 . exon 1477 2079 . - . ID=Phyra86537.1;Parent=Phyra86537;constitutive=1;rank=1 scaffold_796 ensembl protein_coding_gene 6503 8217 . + . ID=Phyra86538;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_796000002;logic_name=jgi_phyra1 scaffold_796 ensembl transcript 6503 8217 . + . ID=Phyra86538;Parent=Phyra86538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_796 . CDS 6503 6589 . + 0 ID=Phyra86538;Parent=Phyra86538;rank=1 scaffold_796 . exon 6503 6589 . + . ID=Phyra86538.1;Parent=Phyra86538;constitutive=1;rank=1 scaffold_796 . CDS 6655 6923 . + 0 ID=Phyra86538;Parent=Phyra86538;rank=2 scaffold_796 . exon 6655 6923 . + . ID=Phyra86538.2;Parent=Phyra86538;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_796 . CDS 6994 7360 . + 0 ID=Phyra86538;Parent=Phyra86538;rank=3 scaffold_796 . exon 6994 7360 . + . ID=Phyra86538.3;Parent=Phyra86538;constitutive=1;ensembl_phase=2;rank=3 scaffold_796 . CDS 7501 8217 . + 0 ID=Phyra86538;Parent=Phyra86538;rank=4 scaffold_796 . exon 7501 8217 . + . ID=Phyra86538.4;Parent=Phyra86538;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_795 1 8581 scaffold_795 . repeat_region 1249 1266 . ? . description=dust scaffold_795 . repeat_region 1329 1338 . ? . description=dust scaffold_795 . repeat_region 1916 6570 . ? . description=dust scaffold_795 . repeat_region 7660 7707 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_815 1 8581 scaffold_815 . repeat_region 1138 6791 . ? . description=dust scaffold_815 . biological_region 7123 7125 0.999 - . logic_name=eponine scaffold_815 . repeat_region 7568 7617 . ? . description=dust scaffold_815 . biological_region 8468 8468 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_870 1 8584 scaffold_870 . biological_region 1080 1083 0.999 + . logic_name=eponine scaffold_870 . repeat_region 2092 2100 . ? . description=dust scaffold_870 . repeat_region 3547 4058 . ? . description=dust scaffold_870 . biological_region 4991 4992 0.999 - . logic_name=eponine scaffold_870 . repeat_region 5667 7260 . ? . description=dust scaffold_870 . repeat_region 7500 7509 . ? . description=dust scaffold_870 ensembl protein_coding_gene 917 3276 . - . ID=Phyra86588;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_870000001;logic_name=jgi_phyra1 scaffold_870 ensembl transcript 917 3276 . - . ID=Phyra86588;Parent=Phyra86588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_870 . CDS 917 951 . - 0 ID=Phyra86588;Parent=Phyra86588;rank=4 scaffold_870 . exon 917 951 . - . ID=Phyra86588.4;Parent=Phyra86588;constitutive=1;ensembl_phase=1;rank=4 scaffold_870 . CDS 972 2014 . - 0 ID=Phyra86588;Parent=Phyra86588;rank=3 scaffold_870 . exon 972 2014 . - . ID=Phyra86588.3;Parent=Phyra86588;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_870 . CDS 2106 3136 . - 0 ID=Phyra86588;Parent=Phyra86588;rank=2 scaffold_870 . exon 2106 3136 . - . ID=Phyra86588.2;Parent=Phyra86588;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_870 . CDS 3220 3276 . - 0 ID=Phyra86588;Parent=Phyra86588;rank=1 scaffold_870 . exon 3220 3276 . - . ID=Phyra86588.1;Parent=Phyra86588;constitutive=1;rank=1 scaffold_870 ensembl protein_coding_gene 4134 5393 . + . ID=Phyra86589;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_870000002;logic_name=jgi_phyra1 scaffold_870 ensembl transcript 4134 5393 . + . ID=Phyra86589;Parent=Phyra86589;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_870 . CDS 4134 5053 . + 0 ID=Phyra86589;Parent=Phyra86589;rank=1 scaffold_870 . exon 4134 5053 . + . ID=Phyra86589.1;Parent=Phyra86589;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_870 . CDS 5140 5337 . + 0 ID=Phyra86589;Parent=Phyra86589;rank=2 scaffold_870 . exon 5140 5337 . + . ID=Phyra86589.2;Parent=Phyra86589;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_870 . CDS 5384 5393 . + 0 ID=Phyra86589;Parent=Phyra86589;rank=3 scaffold_870 . exon 5384 5393 . + . ID=Phyra86589.3;Parent=Phyra86589;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_794 1 8588 scaffold_794 . repeat_region 958 6910 . ? . description=dust scaffold_794 . repeat_region 8112 8122 . ? . description=dust scaffold_794 . biological_region 8131 8132 0.999 - . logic_name=eponine scaffold_794 . biological_region 8143 8150 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_819 1 8589 scaffold_819 . repeat_region 1262 7127 . ? . description=dust scaffold_819 . biological_region 7212 7213 0.999 + . logic_name=eponine scaffold_819 . repeat_region 7725 8216 . - . description=Sola3-2_PS scaffold_819 ensembl protein_coding_gene 7319 8495 . - . ID=Phyra86555;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_819000001;logic_name=jgi_phyra1 scaffold_819 ensembl transcript 7319 8495 . - . ID=Phyra86555;Parent=Phyra86555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_819 . CDS 7319 7333 . - 0 ID=Phyra86555;Parent=Phyra86555;rank=2 scaffold_819 . exon 7319 7333 . - . ID=Phyra86555.2;Parent=Phyra86555;constitutive=1;rank=2 scaffold_819 . CDS 7359 8495 . - 0 ID=Phyra86555;Parent=Phyra86555;rank=1 scaffold_819 . exon 7359 8495 . - . ID=Phyra86555.1;Parent=Phyra86555;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_791 1 8595 scaffold_791 . biological_region 381 381 0.999 - . logic_name=eponine scaffold_791 . repeat_region 920 927 . ? . description=dust scaffold_791 . biological_region 1253 1254 0.999 + . logic_name=eponine scaffold_791 . biological_region 1575 1576 0.999 - . logic_name=eponine scaffold_791 . repeat_region 1701 7481 . ? . description=dust scaffold_791 . biological_region 8084 8088 0.999 - . logic_name=eponine scaffold_791 . biological_region 8425 8427 0.999 + . logic_name=eponine scaffold_791 ensembl protein_coding_gene 4 447 . - . ID=Phyra86533;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_791000001;logic_name=jgi_phyra1 scaffold_791 ensembl transcript 4 447 . - . ID=Phyra86533;Parent=Phyra86533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_791 . CDS 4 281 . - 0 ID=Phyra86533;Parent=Phyra86533;rank=2 scaffold_791 . exon 4 281 . - . ID=Phyra86533.2;Parent=Phyra86533;constitutive=1;ensembl_phase=1;rank=2 scaffold_791 . CDS 330 447 . - 0 ID=Phyra86533;Parent=Phyra86533;rank=1 scaffold_791 . exon 330 447 . - . ID=Phyra86533.1;Parent=Phyra86533;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_791 ensembl protein_coding_gene 1035 1667 . - . ID=Phyra86534;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_791000002;logic_name=jgi_phyra1 scaffold_791 ensembl transcript 1035 1667 . - . ID=Phyra86534;Parent=Phyra86534;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_791 . CDS 1035 1667 . - 0 ID=Phyra86534;Parent=Phyra86534;rank=1 scaffold_791 . exon 1035 1667 . - . ID=Phyra86534.1;Parent=Phyra86534;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1048 1 8595 scaffold_1048 . repeat_region 979 5087 . ? . description=dust scaffold_1048 . repeat_region 5192 5209 . ? . description=dust scaffold_1048 . repeat_region 6404 6436 . ? . description=trf scaffold_1048 . repeat_region 6544 6625 . ? . description=trf scaffold_1048 . repeat_region 6626 7173 . ? . description=dust scaffold_1048 . repeat_region 8471 8502 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_792 1 8596 scaffold_792 . repeat_region 887 1574 . ? . description=trf scaffold_792 . repeat_region 942 1574 . ? . description=trf scaffold_792 . repeat_region 1575 7129 . ? . description=dust scaffold_792 ensembl protein_coding_gene 7284 8538 . + . ID=Phyra86535;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_792000001;logic_name=jgi_phyra1 scaffold_792 ensembl transcript 7284 8538 . + . ID=Phyra86535;Parent=Phyra86535;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_792 . CDS 7284 8538 . + 0 ID=Phyra86535;Parent=Phyra86535;rank=1 scaffold_792 . exon 7284 8538 . + . ID=Phyra86535.1;Parent=Phyra86535;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_786 1 8598 scaffold_786 . biological_region 168 172 0.999 + . logic_name=eponine scaffold_786 . biological_region 1999 1999 0.999 + . logic_name=eponine scaffold_786 . biological_region 2475 2476 0.999 + . logic_name=eponine scaffold_786 . repeat_region 2889 3359 . ? . description=dust scaffold_786 . biological_region 3859 3861 0.999 + . logic_name=eponine scaffold_786 . repeat_region 4988 7210 . ? . description=dust scaffold_786 ensembl protein_coding_gene 1 1011 . + . ID=Phyra86529;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_786000001;logic_name=jgi_phyra1 scaffold_786 ensembl transcript 1 1011 . + . ID=Phyra86529;Parent=Phyra86529;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_786 . exon 1 336 . + . ID=Phyra86529.1;Parent=Phyra86529;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_786 . CDS 3 336 . + 0 ID=Phyra86529;Parent=Phyra86529;rank=1 scaffold_786 . CDS 414 477 . + 0 ID=Phyra86529;Parent=Phyra86529;rank=2 scaffold_786 . exon 414 477 . + . ID=Phyra86529.2;Parent=Phyra86529;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_786 . CDS 549 611 . + 0 ID=Phyra86529;Parent=Phyra86529;rank=3 scaffold_786 . exon 549 611 . + . ID=Phyra86529.3;Parent=Phyra86529;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_786 . CDS 681 1011 . + 0 ID=Phyra86529;Parent=Phyra86529;rank=4 scaffold_786 . exon 681 1011 . + . ID=Phyra86529.4;Parent=Phyra86529;constitutive=1;ensembl_phase=2;rank=4 scaffold_786 ensembl protein_coding_gene 2354 3775 . + . ID=Phyra86530;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_786000002;logic_name=jgi_phyra1 scaffold_786 ensembl transcript 2354 3775 . + . ID=Phyra86530;Parent=Phyra86530;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_786 . CDS 2354 2842 . + 0 ID=Phyra86530;Parent=Phyra86530;rank=1 scaffold_786 . exon 2354 2842 . + . ID=Phyra86530.1;Parent=Phyra86530;constitutive=1;rank=1 scaffold_786 . CDS 3440 3775 . + 0 ID=Phyra86530;Parent=Phyra86530;rank=2 scaffold_786 . exon 3440 3775 . + . ID=Phyra86530.2;Parent=Phyra86530;constitutive=1;rank=2 scaffold_786 ensembl protein_coding_gene 4314 4826 . - . ID=Phyra86531;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_786000003;logic_name=jgi_phyra1 scaffold_786 ensembl transcript 4314 4826 . - . ID=Phyra86531;Parent=Phyra86531;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_786 . CDS 4314 4826 . - 0 ID=Phyra86531;Parent=Phyra86531;rank=1 scaffold_786 . exon 4314 4826 . - . ID=Phyra86531.1;Parent=Phyra86531;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_783 1 8600 scaffold_783 . repeat_region 1475 1482 . ? . description=dust scaffold_783 . biological_region 2544 2548 0.999 - . logic_name=eponine scaffold_783 . biological_region 2600 2605 0.999 + . logic_name=eponine scaffold_783 . biological_region 2620 2622 0.999 + . logic_name=eponine scaffold_783 . repeat_region 2779 2824 . ? . description=trf scaffold_783 . repeat_region 5004 6484 . ? . description=dust scaffold_783 . biological_region 8016 8019 0.999 + . logic_name=eponine scaffold_783 ensembl protein_coding_gene 7733 8599 . + . ID=Phyra53138;biotype=protein_coding;external_name=gwEuk.783.2.1;logic_name=jgi_phyra1 scaffold_783 ensembl transcript 7733 8599 . + . ID=Phyra53138;Parent=Phyra53138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_783 . CDS 7733 8599 . + 0 ID=Phyra53138;Parent=Phyra53138;rank=1 scaffold_783 . exon 7733 8599 . + . ID=Phyra53138.1;Parent=Phyra53138;constitutive=1;rank=1 scaffold_783 ensembl protein_coding_gene 212 1378 . + . ID=Phyra86523;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_783000001;logic_name=jgi_phyra1 scaffold_783 ensembl transcript 212 1378 . + . ID=Phyra86523;Parent=Phyra86523;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_783 . CDS 212 1378 . + 0 ID=Phyra86523;Parent=Phyra86523;rank=1 scaffold_783 . exon 212 1378 . + . ID=Phyra86523.1;Parent=Phyra86523;constitutive=1;rank=1 scaffold_783 ensembl protein_coding_gene 2154 3701 . + . ID=Phyra86524;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_783000002;logic_name=jgi_phyra1 scaffold_783 ensembl transcript 2154 3701 . + . ID=Phyra86524;Parent=Phyra86524;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_783 . CDS 2154 3701 . + 0 ID=Phyra86524;Parent=Phyra86524;rank=1 scaffold_783 . exon 2154 3701 . + . ID=Phyra86524.1;Parent=Phyra86524;constitutive=1;rank=1 scaffold_783 ensembl protein_coding_gene 4296 4934 . - . ID=Phyra86525;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_783000003;logic_name=jgi_phyra1 scaffold_783 ensembl transcript 4296 4934 . - . ID=Phyra86525;Parent=Phyra86525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_783 . CDS 4296 4934 . - 0 ID=Phyra86525;Parent=Phyra86525;rank=1 scaffold_783 . exon 4296 4934 . - . ID=Phyra86525.1;Parent=Phyra86525;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_790 1 8601 scaffold_790 . repeat_region 801 6917 . ? . description=dust scaffold_790 . repeat_region 7907 7993 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_789 1 8603 scaffold_789 . biological_region 1547 1550 0.999 + . logic_name=eponine scaffold_789 . repeat_region 2486 3023 . ? . description=dust scaffold_789 . biological_region 3857 3861 0.999 + . logic_name=eponine scaffold_789 . repeat_region 4170 7244 . ? . description=dust scaffold_789 . repeat_region 7253 7374 . - . description=GypsyPi-1c_I-int scaffold_789 . biological_region 7838 7838 0.999 - . logic_name=eponine scaffold_789 . biological_region 7889 7894 0.999 - . logic_name=eponine scaffold_789 . biological_region 7929 7930 0.999 + . logic_name=eponine scaffold_789 . biological_region 7967 7967 0.999 + . logic_name=eponine scaffold_789 . biological_region 7990 7996 0.999 - . logic_name=eponine scaffold_789 . biological_region 8043 8047 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_785 1 8605 scaffold_785 . biological_region 149 152 0.999 + . logic_name=eponine scaffold_785 . repeat_region 184 202 . ? . description=dust scaffold_785 . repeat_region 1143 7115 . ? . description=dust scaffold_785 ensembl protein_coding_gene 21 929 . - . ID=Phyra86528;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_785000001;logic_name=jgi_phyra1 scaffold_785 ensembl transcript 21 929 . - . ID=Phyra86528;Parent=Phyra86528;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_785 . CDS 21 287 . - 0 ID=Phyra86528;Parent=Phyra86528;rank=4 scaffold_785 . exon 21 287 . - . ID=Phyra86528.4;Parent=Phyra86528;constitutive=1;rank=4 scaffold_785 . CDS 367 432 . - 0 ID=Phyra86528;Parent=Phyra86528;rank=3 scaffold_785 . exon 367 432 . - . ID=Phyra86528.3;Parent=Phyra86528;constitutive=1;rank=3 scaffold_785 . CDS 540 702 . - 0 ID=Phyra86528;Parent=Phyra86528;rank=2 scaffold_785 . exon 540 702 . - . ID=Phyra86528.2;Parent=Phyra86528;constitutive=1;ensembl_phase=2;rank=2 scaffold_785 . CDS 748 929 . - 0 ID=Phyra86528;Parent=Phyra86528;rank=1 scaffold_785 . exon 748 929 . - . ID=Phyra86528.1;Parent=Phyra86528;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_787 1 8605 scaffold_787 . repeat_region 335 386 . ? . description=trf scaffold_787 . repeat_region 931 6851 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_784 1 8607 scaffold_784 . biological_region 175 175 0.999 - . logic_name=eponine scaffold_784 . biological_region 214 216 0.999 + . logic_name=eponine scaffold_784 . biological_region 230 232 0.999 + . logic_name=eponine scaffold_784 . repeat_region 915 6394 . ? . description=dust scaffold_784 . repeat_region 7561 7817 . ? . description=trf scaffold_784 ensembl protein_coding_gene 6503 7148 . - . ID=Phyra53139;biotype=protein_coding;external_name=gwEuk.784.1.1;logic_name=jgi_phyra1 scaffold_784 ensembl transcript 6503 7148 . - . ID=Phyra53139;Parent=Phyra53139;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_784 . CDS 6503 6628 . - 0 ID=Phyra53139;Parent=Phyra53139;rank=4 scaffold_784 . exon 6503 6628 . - . ID=Phyra53139.4;Parent=Phyra53139;constitutive=1;rank=4 scaffold_784 . CDS 6700 6787 . - 0 ID=Phyra53139;Parent=Phyra53139;rank=3 scaffold_784 . exon 6700 6787 . - . ID=Phyra53139.3;Parent=Phyra53139;constitutive=1;ensembl_phase=2;rank=3 scaffold_784 . CDS 6863 6946 . - 0 ID=Phyra53139;Parent=Phyra53139;rank=2 scaffold_784 . exon 6863 6946 . - . ID=Phyra53139.2;Parent=Phyra53139;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_784 . CDS 7021 7148 . - 0 ID=Phyra53139;Parent=Phyra53139;rank=1 scaffold_784 . exon 7021 7148 . - . ID=Phyra53139.1;Parent=Phyra53139;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_784 ensembl protein_coding_gene 7383 8512 . - . ID=Phyra86527;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_784000001;logic_name=jgi_phyra1 scaffold_784 ensembl transcript 7383 8512 . - . ID=Phyra86527;Parent=Phyra86527;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_784 . CDS 7383 7850 . - 0 ID=Phyra86527;Parent=Phyra86527;rank=3 scaffold_784 . exon 7383 7850 . - . ID=Phyra86527.3;Parent=Phyra86527;constitutive=1;rank=3 scaffold_784 . CDS 8244 8355 . - 0 ID=Phyra86527;Parent=Phyra86527;rank=2 scaffold_784 . exon 8244 8355 . - . ID=Phyra86527.2;Parent=Phyra86527;constitutive=1;ensembl_phase=2;rank=2 scaffold_784 . CDS 8430 8512 . - 0 ID=Phyra86527;Parent=Phyra86527;rank=1 scaffold_784 . exon 8430 8512 . - . ID=Phyra86527.1;Parent=Phyra86527;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_782 1 8610 scaffold_782 . repeat_region 1 1129 . + . description=GypsyPi-1c_I-int scaffold_782 . repeat_region 1159 7291 . ? . description=dust scaffold_782 ensembl protein_coding_gene 7453 8574 . + . ID=Phyra86522;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_782000001;logic_name=jgi_phyra1 scaffold_782 ensembl transcript 7453 8574 . + . ID=Phyra86522;Parent=Phyra86522;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_782 . CDS 7453 8574 . + 0 ID=Phyra86522;Parent=Phyra86522;rank=1 scaffold_782 . exon 7453 8574 . + . ID=Phyra86522.1;Parent=Phyra86522;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_818 1 8614 scaffold_818 . repeat_region 1053 1087 . ? . description=trf scaffold_818 . biological_region 1610 1614 0.999 - . logic_name=eponine scaffold_818 . biological_region 1689 1695 0.999 + . logic_name=eponine scaffold_818 . biological_region 1722 1724 0.999 - . logic_name=eponine scaffold_818 . repeat_region 1882 2849 . ? . description=dust scaffold_818 . repeat_region 4155 7402 . ? . description=dust scaffold_818 . biological_region 8440 8444 0.999 - . logic_name=eponine scaffold_818 ensembl protein_coding_gene 1123 1881 . + . ID=Phyra53628;biotype=protein_coding;external_name=gwEuk.818.3.1;logic_name=jgi_phyra1 scaffold_818 ensembl transcript 1123 1881 . + . ID=Phyra53628;Parent=Phyra53628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_818 . CDS 1123 1881 . + 0 ID=Phyra53628;Parent=Phyra53628;rank=1 scaffold_818 . exon 1123 1881 . + . ID=Phyra53628.1;Parent=Phyra53628;constitutive=1;rank=1 scaffold_818 ensembl protein_coding_gene 3062 3652 . - . ID=Phyra86554;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_818000002;logic_name=jgi_phyra1 scaffold_818 ensembl transcript 3062 3652 . - . ID=Phyra86554;Parent=Phyra86554;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_818 . CDS 3062 3652 . - 0 ID=Phyra86554;Parent=Phyra86554;rank=1 scaffold_818 . exon 3062 3652 . - . ID=Phyra86554.1;Parent=Phyra86554;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_781 1 8616 scaffold_781 . repeat_region 140 149 . ? . description=dust scaffold_781 . repeat_region 1486 6921 . ? . description=dust scaffold_781 ensembl protein_coding_gene 485 1369 . - . ID=Phyra86520;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_781000001;logic_name=jgi_phyra1 scaffold_781 ensembl transcript 485 1369 . - . ID=Phyra86520;Parent=Phyra86520;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_781 . CDS 485 1369 . - 0 ID=Phyra86520;Parent=Phyra86520;rank=1 scaffold_781 . exon 485 1369 . - . ID=Phyra86520.1;Parent=Phyra86520;constitutive=1;rank=1 scaffold_781 ensembl protein_coding_gene 7707 8587 . + . ID=Phyra86521;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_781000002;logic_name=jgi_phyra1 scaffold_781 ensembl transcript 7707 8587 . + . ID=Phyra86521;Parent=Phyra86521;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_781 . CDS 7707 8587 . + 0 ID=Phyra86521;Parent=Phyra86521;rank=1 scaffold_781 . exon 7707 8587 . + . ID=Phyra86521.1;Parent=Phyra86521;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_778 1 8618 scaffold_778 . repeat_region 480 491 . ? . description=dust scaffold_778 . repeat_region 2127 7772 . ? . description=dust scaffold_778 . repeat_region 8134 8228 . ? . description=trf scaffold_778 . repeat_region 8134 8228 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_779 1 8624 scaffold_779 . repeat_region 1998 7578 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_776 1 8625 scaffold_776 . biological_region 475 478 0.999 + . logic_name=eponine scaffold_776 . repeat_region 753 6548 . ? . description=dust scaffold_776 . repeat_region 6549 7129 . + . description=GypsyPi-1c_I-int scaffold_776 . biological_region 7078 7085 0.999 - . logic_name=eponine scaffold_776 . biological_region 7391 7393 0.999 - . logic_name=eponine scaffold_776 . biological_region 7426 7431 0.999 - . logic_name=eponine scaffold_776 . biological_region 7445 7451 0.999 + . logic_name=eponine scaffold_776 . biological_region 7684 7687 0.999 - . logic_name=eponine scaffold_776 . biological_region 7841 7846 0.999 + . logic_name=eponine scaffold_776 . biological_region 7896 7900 0.999 + . logic_name=eponine scaffold_776 . biological_region 7947 7952 0.999 - . logic_name=eponine scaffold_776 . biological_region 8307 8312 0.999 - . logic_name=eponine scaffold_776 . repeat_region 8406 8484 . ? . description=trf scaffold_776 . biological_region 8423 8427 0.999 + . logic_name=eponine scaffold_776 . biological_region 8530 8536 0.999 - . logic_name=eponine scaffold_776 . biological_region 8566 8570 0.999 - . logic_name=eponine scaffold_776 ensembl protein_coding_gene 6672 7058 . + . ID=Phyra53081;biotype=protein_coding;external_name=gwEuk.776.3.1;logic_name=jgi_phyra1 scaffold_776 ensembl transcript 6672 7058 . + . ID=Phyra53081;Parent=Phyra53081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_776 . CDS 6672 7058 . + 0 ID=Phyra53081;Parent=Phyra53081;rank=1 scaffold_776 . exon 6672 7058 . + . ID=Phyra53081.1;Parent=Phyra53081;constitutive=1;rank=1 scaffold_776 ensembl protein_coding_gene 7258 8561 . + . ID=Phyra86518;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_776000002;logic_name=jgi_phyra1 scaffold_776 ensembl transcript 7258 8561 . + . ID=Phyra86518;Parent=Phyra86518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_776 . exon 7258 7382 . + . ID=Phyra86518.1;Parent=Phyra86518;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_776 . CDS 7259 7382 . + 0 ID=Phyra86518;Parent=Phyra86518;rank=1 scaffold_776 . CDS 7453 8561 . + 0 ID=Phyra86518;Parent=Phyra86518;rank=2 scaffold_776 . exon 7453 8561 . + . ID=Phyra86518.2;Parent=Phyra86518;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_777 1 8631 scaffold_777 . repeat_region 160 216 . ? . description=trf scaffold_777 . repeat_region 160 216 . ? . description=trf scaffold_777 . repeat_region 288 372 . ? . description=trf scaffold_777 . repeat_region 479 510 . ? . description=trf scaffold_777 . repeat_region 1154 6824 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_775 1 8632 scaffold_775 . biological_region 459 466 0.999 + . logic_name=eponine scaffold_775 . repeat_region 1983 7351 . ? . description=dust scaffold_775 ensembl protein_coding_gene 40 546 . - . ID=Phyra86515;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_775000001;logic_name=jgi_phyra1 scaffold_775 ensembl transcript 40 546 . - . ID=Phyra86515;Parent=Phyra86515;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_775 . CDS 40 546 . - 0 ID=Phyra86515;Parent=Phyra86515;rank=1 scaffold_775 . exon 40 546 . - . ID=Phyra86515.1;Parent=Phyra86515;constitutive=1;rank=1 scaffold_775 ensembl protein_coding_gene 934 1812 . - . ID=Phyra86516;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_775000002;logic_name=jgi_phyra1 scaffold_775 ensembl transcript 934 1812 . - . ID=Phyra86516;Parent=Phyra86516;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_775 . CDS 934 1812 . - 0 ID=Phyra86516;Parent=Phyra86516;rank=1 scaffold_775 . exon 934 1812 . - . ID=Phyra86516.1;Parent=Phyra86516;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_773 1 8633 scaffold_773 . repeat_region 1357 6912 . ? . description=dust scaffold_773 ensembl protein_coding_gene 625 1146 . - . ID=Phyra86513;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_773000001;logic_name=jgi_phyra1 scaffold_773 ensembl transcript 625 1146 . - . ID=Phyra86513;Parent=Phyra86513;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_773 . CDS 625 1146 . - 0 ID=Phyra86513;Parent=Phyra86513;rank=1 scaffold_773 . exon 625 1146 . - . ID=Phyra86513.1;Parent=Phyra86513;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_780 1 8633 scaffold_780 . repeat_region 698 5544 . ? . description=dust scaffold_780 . repeat_region 6761 6770 . ? . description=dust scaffold_780 ensembl pseudogene 6133 6475 . - . ID=Phyra53130;biotype=pseudogene;external_name=gwEuk.780.3.1;logic_name=jgi_phyra1 scaffold_780 ensembl pseudogene 6133 6475 . - . ID=Phyra53130;Parent=Phyra53130;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_780 . exon 6133 6475 . - . ID=Phyra53130.1;Parent=Phyra53130;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_780 ensembl protein_coding_gene 6890 7840 . - . ID=Phyra72433;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_780000001;logic_name=jgi_phyra1 scaffold_780 ensembl transcript 6890 7840 . - . ID=Phyra72433;Parent=Phyra72433;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_780 . CDS 6890 7563 . - 0 ID=Phyra72433;Parent=Phyra72433;rank=2 scaffold_780 . exon 6890 7563 . - . ID=Phyra72433.2;Parent=Phyra72433;constitutive=1;ensembl_phase=1;rank=2 scaffold_780 . CDS 7777 7840 . - 0 ID=Phyra72433;Parent=Phyra72433;rank=1 scaffold_780 . exon 7777 7840 . - . ID=Phyra72433.1;Parent=Phyra72433;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_828 1 8634 scaffold_828 . repeat_region 2080 3342 . ? . description=dust scaffold_828 . biological_region 3601 3607 0.999 - . logic_name=eponine scaffold_828 . repeat_region 4432 5140 . ? . description=dust scaffold_828 . biological_region 6032 6034 0.999 - . logic_name=eponine scaffold_828 . repeat_region 6489 7370 . ? . description=dust scaffold_828 . repeat_region 7467 7888 . ? . description=trf scaffold_828 . biological_region 7492 7497 0.999 + . logic_name=eponine scaffold_828 . repeat_region 8017 8634 . + . description=GypsyPi-1c_I-int scaffold_828 . biological_region 8253 8254 0.999 + . logic_name=eponine scaffold_828 . biological_region 8383 8384 0.999 + . logic_name=eponine scaffold_828 ensembl pseudogene 388 2037 . - . ID=Phyra53691;biotype=pseudogene;external_name=gwEuk.828.1.1;logic_name=jgi_phyra1 scaffold_828 ensembl pseudogene 388 2037 . - . ID=Phyra53691;Parent=Phyra53691;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_828 . exon 388 1123 . - . ID=Phyra53691.3;Parent=Phyra53691;constitutive=1;ensembl_phase=2;rank=3 scaffold_828 . exon 1172 1506 . - . ID=Phyra53691.2;Parent=Phyra53691;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_828 . exon 1627 2037 . - . ID=Phyra53691.1;Parent=Phyra53691;constitutive=1;rank=1 scaffold_828 ensembl protein_coding_gene 5466 8483 . + . ID=Phyra86560;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_828000001;logic_name=jgi_phyra1 scaffold_828 ensembl transcript 5466 8483 . + . ID=Phyra86560;Parent=Phyra86560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_828 . CDS 5466 6289 . + 0 ID=Phyra86560;Parent=Phyra86560;rank=1 scaffold_828 . exon 5466 6289 . + . ID=Phyra86560.1;Parent=Phyra86560;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_828 . CDS 7428 7916 . + 0 ID=Phyra86560;Parent=Phyra86560;rank=2 scaffold_828 . exon 7428 7916 . + . ID=Phyra86560.2;Parent=Phyra86560;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_828 . CDS 7949 8483 . + 0 ID=Phyra86560;Parent=Phyra86560;rank=3 scaffold_828 . exon 7949 8483 . + . ID=Phyra86560.3;Parent=Phyra86560;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_770 1 8636 scaffold_770 . repeat_region 768 792 . ? . description=trf scaffold_770 . biological_region 1264 1268 0.999 - . logic_name=eponine scaffold_770 . biological_region 1358 1361 0.999 - . logic_name=eponine scaffold_770 . biological_region 1451 1451 0.999 - . logic_name=eponine scaffold_770 . repeat_region 1912 7274 . ? . description=dust scaffold_770 ensembl protein_coding_gene 8257 8631 . + . ID=Phyra86512;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_770000001;logic_name=jgi_phyra1 scaffold_770 ensembl transcript 8257 8631 . + . ID=Phyra86512;Parent=Phyra86512;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_770 . CDS 8257 8631 . + 0 ID=Phyra86512;Parent=Phyra86512;rank=1 scaffold_770 . exon 8257 8631 . + . ID=Phyra86512.1;Parent=Phyra86512;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_769 1 8638 scaffold_769 . repeat_region 2421 3138 . ? . description=dust scaffold_769 . repeat_region 4946 5211 . ? . description=dust scaffold_769 ensembl protein_coding_gene 2 887 . + . ID=Phyra86509;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_769000001;logic_name=jgi_phyra1 scaffold_769 ensembl transcript 2 887 . + . ID=Phyra86509;Parent=Phyra86509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_769 . CDS 2 320 . + 0 ID=Phyra86509;Parent=Phyra86509;rank=1 scaffold_769 . exon 2 320 . + . ID=Phyra86509.1;Parent=Phyra86509;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_769 . CDS 394 440 . + 0 ID=Phyra86509;Parent=Phyra86509;rank=2 scaffold_769 . exon 394 440 . + . ID=Phyra86509.2;Parent=Phyra86509;constitutive=1;ensembl_phase=1;rank=2 scaffold_769 . CDS 509 742 . + 0 ID=Phyra86509;Parent=Phyra86509;rank=3 scaffold_769 . exon 509 742 . + . ID=Phyra86509.3;Parent=Phyra86509;constitutive=1;rank=3 scaffold_769 . CDS 876 887 . + 0 ID=Phyra86509;Parent=Phyra86509;rank=4 scaffold_769 . exon 876 887 . + . ID=Phyra86509.4;Parent=Phyra86509;constitutive=1;rank=4 scaffold_769 ensembl protein_coding_gene 1072 4616 . - . ID=Phyra86510;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_769000002;logic_name=jgi_phyra1 scaffold_769 ensembl transcript 1072 4616 . - . ID=Phyra86510;Parent=Phyra86510;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_769 . CDS 1072 1341 . - 0 ID=Phyra86510;Parent=Phyra86510;rank=9 scaffold_769 . exon 1072 1341 . - . ID=Phyra86510.9;Parent=Phyra86510;constitutive=1;rank=9 scaffold_769 . CDS 1419 1763 . - 0 ID=Phyra86510;Parent=Phyra86510;rank=8 scaffold_769 . exon 1419 1763 . - . ID=Phyra86510.8;Parent=Phyra86510;constitutive=1;rank=8 scaffold_769 . CDS 1824 1962 . - 0 ID=Phyra86510;Parent=Phyra86510;rank=7 scaffold_769 . exon 1824 1962 . - . ID=Phyra86510.7;Parent=Phyra86510;constitutive=1;ensembl_phase=2;rank=7 scaffold_769 . CDS 2044 2273 . - 0 ID=Phyra86510;Parent=Phyra86510;rank=6 scaffold_769 . exon 2044 2273 . - . ID=Phyra86510.6;Parent=Phyra86510;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_769 . CDS 3146 3280 . - 0 ID=Phyra86510;Parent=Phyra86510;rank=5 scaffold_769 . exon 3146 3280 . - . ID=Phyra86510.5;Parent=Phyra86510;constitutive=1;rank=5 scaffold_769 . CDS 3353 3486 . - 0 ID=Phyra86510;Parent=Phyra86510;rank=4 scaffold_769 . exon 3353 3486 . - . ID=Phyra86510.4;Parent=Phyra86510;constitutive=1;ensembl_phase=1;rank=4 scaffold_769 . CDS 3592 3703 . - 0 ID=Phyra86510;Parent=Phyra86510;rank=3 scaffold_769 . exon 3592 3703 . - . ID=Phyra86510.3;Parent=Phyra86510;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_769 . CDS 4033 4317 . - 0 ID=Phyra86510;Parent=Phyra86510;rank=2 scaffold_769 . exon 4033 4317 . - . ID=Phyra86510.2;Parent=Phyra86510;constitutive=1;rank=2 scaffold_769 . CDS 4389 4616 . - 0 ID=Phyra86510;Parent=Phyra86510;rank=1 scaffold_769 . exon 4389 4616 . - . ID=Phyra86510.1;Parent=Phyra86510;constitutive=1;rank=1 scaffold_769 ensembl protein_coding_gene 4880 6330 . + . ID=Phyra86511;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_769000003;logic_name=jgi_phyra1 scaffold_769 ensembl transcript 4880 6330 . + . ID=Phyra86511;Parent=Phyra86511;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_769 . CDS 4880 4942 . + 0 ID=Phyra86511;Parent=Phyra86511;rank=1 scaffold_769 . exon 4880 4942 . + . ID=Phyra86511.1;Parent=Phyra86511;constitutive=1;rank=1 scaffold_769 . CDS 5254 6330 . + 0 ID=Phyra86511;Parent=Phyra86511;rank=2 scaffold_769 . exon 5254 6330 . + . ID=Phyra86511.2;Parent=Phyra86511;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_771 1 8640 scaffold_771 . repeat_region 1178 1221 . ? . description=trf scaffold_771 . repeat_region 1615 1649 . ? . description=trf scaffold_771 . repeat_region 1879 7693 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_768 1 8643 scaffold_768 . biological_region 874 877 0.999 + . logic_name=eponine scaffold_768 . repeat_region 1666 7523 . ? . description=dust scaffold_768 . biological_region 7610 7612 0.999 - . logic_name=eponine scaffold_768 ensembl protein_coding_gene 8299 8603 . + . ID=Phyra86508;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_768000001;logic_name=jgi_phyra1 scaffold_768 ensembl transcript 8299 8603 . + . ID=Phyra86508;Parent=Phyra86508;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_768 . CDS 8299 8603 . + 0 ID=Phyra86508;Parent=Phyra86508;rank=1 scaffold_768 . exon 8299 8603 . + . ID=Phyra86508.1;Parent=Phyra86508;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_878 1 8643 scaffold_878 . repeat_region 5 1322 . - . description=Polinton-1_PI scaffold_878 . repeat_region 1342 2545 . ? . description=dust scaffold_878 . repeat_region 2565 3043 . - . description=Polinton-1_PI scaffold_878 . repeat_region 2750 2758 . ? . description=dust scaffold_878 . repeat_region 3498 4270 . ? . description=dust scaffold_878 . repeat_region 4275 6253 . - . description=Polinton-1_PI scaffold_878 . repeat_region 6254 7025 . ? . description=dust scaffold_878 . repeat_region 7026 8643 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_788 1 8653 scaffold_788 . repeat_region 1099 1148 . ? . description=dust scaffold_788 . repeat_region 2560 4663 . ? . description=dust scaffold_788 . biological_region 4907 4908 0.999 + . logic_name=eponine scaffold_788 . repeat_region 5771 7215 . ? . description=dust scaffold_788 . repeat_region 8309 8335 . ? . description=trf scaffold_788 . repeat_region 8309 8335 . ? . description=dust scaffold_788 ensembl protein_coding_gene 4853 5601 . + . ID=Phyra86532;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_788000001;logic_name=jgi_phyra1 scaffold_788 ensembl transcript 4853 5601 . + . ID=Phyra86532;Parent=Phyra86532;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_788 . CDS 4853 5478 . + 0 ID=Phyra86532;Parent=Phyra86532;rank=1 scaffold_788 . exon 4853 5478 . + . ID=Phyra86532.1;Parent=Phyra86532;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_788 . CDS 5508 5541 . + 0 ID=Phyra86532;Parent=Phyra86532;rank=2 scaffold_788 . exon 5508 5541 . + . ID=Phyra86532.2;Parent=Phyra86532;constitutive=1;ensembl_phase=2;rank=2 scaffold_788 . CDS 5575 5601 . + 0 ID=Phyra86532;Parent=Phyra86532;rank=3 scaffold_788 . exon 5575 5601 . + . ID=Phyra86532.3;Parent=Phyra86532;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_774 1 8663 scaffold_774 . repeat_region 1666 7436 . ? . description=dust scaffold_774 ensembl protein_coding_gene 110 8146 . - . ID=Phyra86514;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_774000001;logic_name=jgi_phyra1 scaffold_774 ensembl transcript 110 8146 . - . ID=Phyra86514;Parent=Phyra86514;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_774 . CDS 110 1621 . - 0 ID=Phyra86514;Parent=Phyra86514;rank=2 scaffold_774 . exon 110 1621 . - . ID=Phyra86514.2;Parent=Phyra86514;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_774 . CDS 7447 8146 . - 0 ID=Phyra86514;Parent=Phyra86514;rank=1 scaffold_774 . exon 7447 8146 . - . ID=Phyra86514.1;Parent=Phyra86514;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_766 1 8665 scaffold_766 . repeat_region 2303 4580 . ? . description=dust scaffold_766 . repeat_region 6132 6637 . ? . description=dust scaffold_766 . repeat_region 6704 6712 . ? . description=dust scaffold_766 . biological_region 6881 6885 0.999 + . logic_name=eponine scaffold_766 . repeat_region 6947 6981 . ? . description=dust scaffold_766 . repeat_region 6954 6981 . ? . description=trf scaffold_766 . repeat_region 6954 6986 . ? . description=trf scaffold_766 . repeat_region 6954 6986 . ? . description=trf scaffold_766 . biological_region 7317 7319 0.999 + . logic_name=eponine scaffold_766 . biological_region 7360 7364 0.999 - . logic_name=eponine scaffold_766 ensembl protein_coding_gene 829 1401 . - . ID=Phyra53011;biotype=protein_coding;external_name=gwEuk.766.7.1;logic_name=jgi_phyra1 scaffold_766 ensembl transcript 829 1401 . - . ID=Phyra53011;Parent=Phyra53011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_766 . CDS 829 1401 . - 0 ID=Phyra53011;Parent=Phyra53011;rank=1 scaffold_766 . exon 829 1401 . - . ID=Phyra53011.1;Parent=Phyra53011;constitutive=1;rank=1 scaffold_766 ensembl protein_coding_gene 5462 5905 . - . ID=Phyra72431;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_766000001;logic_name=jgi_phyra1 scaffold_766 ensembl transcript 5462 5905 . - . ID=Phyra72431;Parent=Phyra72431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_766 . CDS 5462 5905 . - 0 ID=Phyra72431;Parent=Phyra72431;rank=1 scaffold_766 . exon 5462 5905 . - . ID=Phyra72431.1;Parent=Phyra72431;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_765 1 8667 scaffold_765 . repeat_region 1059 6644 . ? . description=dust scaffold_765 ensembl protein_coding_gene 7058 7774 . - . ID=Phyra72430;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_765000001;logic_name=jgi_phyra1 scaffold_765 ensembl transcript 7058 7774 . - . ID=Phyra72430;Parent=Phyra72430;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_765 . CDS 7058 7774 . - 0 ID=Phyra72430;Parent=Phyra72430;rank=1 scaffold_765 . exon 7058 7774 . - . ID=Phyra72430.1;Parent=Phyra72430;constitutive=1;rank=1 scaffold_765 ensembl protein_coding_gene 32 622 . - . ID=Phyra86503;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_765000001;logic_name=jgi_phyra1 scaffold_765 ensembl transcript 32 622 . - . ID=Phyra86503;Parent=Phyra86503;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_765 . CDS 32 622 . - 0 ID=Phyra86503;Parent=Phyra86503;rank=1 scaffold_765 . exon 32 622 . - . ID=Phyra86503.1;Parent=Phyra86503;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_831 1 8667 scaffold_831 . repeat_region 41 1588 . + . description=GypsyPi-1c_I-int scaffold_831 . biological_region 159 159 0.999 + . logic_name=eponine scaffold_831 . biological_region 1213 1213 0.999 - . logic_name=eponine scaffold_831 . repeat_region 1589 7785 . ? . description=dust scaffold_831 ensembl protein_coding_gene 277 933 . + . ID=Phyra86562;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_831000001;logic_name=jgi_phyra1 scaffold_831 ensembl transcript 277 933 . + . ID=Phyra86562;Parent=Phyra86562;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_831 . CDS 277 933 . + 0 ID=Phyra86562;Parent=Phyra86562;rank=1 scaffold_831 . exon 277 933 . + . ID=Phyra86562.1;Parent=Phyra86562;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_767 1 8668 scaffold_767 . biological_region 1255 1256 0.999 + . logic_name=eponine scaffold_767 . repeat_region 1852 7013 . ? . description=dust scaffold_767 . repeat_region 7466 7574 . ? . description=dust scaffold_767 . repeat_region 7467 7573 . ? . description=trf scaffold_767 . repeat_region 7471 7577 . ? . description=trf scaffold_767 . repeat_region 7477 7577 . ? . description=trf scaffold_767 . biological_region 7484 7488 0.999 + . logic_name=eponine scaffold_767 ensembl protein_coding_gene 86 1203 . + . ID=Phyra86506;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_767000001;logic_name=jgi_phyra1 scaffold_767 ensembl transcript 86 1203 . + . ID=Phyra86506;Parent=Phyra86506;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_767 . exon 86 1079 . + . ID=Phyra86506.1;Parent=Phyra86506;constitutive=1;ensembl_phase=-1;rank=1 scaffold_767 . CDS 87 1079 . + 0 ID=Phyra86506;Parent=Phyra86506;rank=1 scaffold_767 . CDS 1099 1203 . + 0 ID=Phyra86506;Parent=Phyra86506;rank=2 scaffold_767 . exon 1099 1203 . + . ID=Phyra86506.2;Parent=Phyra86506;constitutive=1;rank=2 scaffold_767 ensembl protein_coding_gene 7393 8491 . + . ID=Phyra86507;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_767000002;logic_name=jgi_phyra1 scaffold_767 ensembl transcript 7393 8491 . + . ID=Phyra86507;Parent=Phyra86507;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_767 . CDS 7393 7606 . + 0 ID=Phyra86507;Parent=Phyra86507;rank=1 scaffold_767 . exon 7393 7606 . + . ID=Phyra86507.1;Parent=Phyra86507;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_767 . CDS 7683 8491 . + 0 ID=Phyra86507;Parent=Phyra86507;rank=2 scaffold_767 . exon 7683 8491 . + . ID=Phyra86507.2;Parent=Phyra86507;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_764 1 8682 scaffold_764 . repeat_region 789 7003 . ? . description=dust scaffold_764 . biological_region 7799 7800 0.999 - . logic_name=eponine scaffold_764 ensembl protein_coding_gene 7992 8609 . - . ID=Phyra86502;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_764000001;logic_name=jgi_phyra1 scaffold_764 ensembl transcript 7992 8609 . - . ID=Phyra86502;Parent=Phyra86502;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_764 . CDS 7992 8609 . - 0 ID=Phyra86502;Parent=Phyra86502;rank=1 scaffold_764 . exon 7992 8609 . - . ID=Phyra86502.1;Parent=Phyra86502;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_763 1 8686 scaffold_763 . biological_region 385 387 0.999 + . logic_name=eponine scaffold_763 . repeat_region 2271 3089 . ? . description=dust scaffold_763 . repeat_region 4210 7031 . ? . description=dust scaffold_763 . biological_region 7858 7863 0.999 + . logic_name=eponine scaffold_763 . biological_region 8195 8195 0.999 + . logic_name=eponine scaffold_763 . repeat_region 8211 8277 . ? . description=trf scaffold_763 . repeat_region 8211 8290 . ? . description=trf scaffold_763 ensembl protein_coding_gene 102 1574 . + . ID=Phyra86500;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_763000001;logic_name=jgi_phyra1 scaffold_763 ensembl transcript 102 1574 . + . ID=Phyra86500;Parent=Phyra86500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_763 . CDS 102 1574 . + 0 ID=Phyra86500;Parent=Phyra86500;rank=1 scaffold_763 . exon 102 1574 . + . ID=Phyra86500.1;Parent=Phyra86500;constitutive=1;rank=1 scaffold_763 ensembl protein_coding_gene 7633 8643 . - . ID=Phyra86501;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_763000002;logic_name=jgi_phyra1 scaffold_763 ensembl transcript 7633 8643 . - . ID=Phyra86501;Parent=Phyra86501;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_763 . CDS 7633 8643 . - 0 ID=Phyra86501;Parent=Phyra86501;rank=1 scaffold_763 . exon 7633 8643 . - . ID=Phyra86501.1;Parent=Phyra86501;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_759 1 8688 scaffold_759 . repeat_region 418 511 . ? . description=trf scaffold_759 . biological_region 1450 1452 0.999 + . logic_name=eponine scaffold_759 . biological_region 1968 1972 0.999 - . logic_name=eponine scaffold_759 . biological_region 2368 2371 0.999 - . logic_name=eponine scaffold_759 . biological_region 3521 3527 0.999 - . logic_name=eponine scaffold_759 . biological_region 3595 3596 0.999 - . logic_name=eponine scaffold_759 . biological_region 3600 3605 0.999 + . logic_name=eponine scaffold_759 . repeat_region 4943 5053 . ? . description=trf scaffold_759 . repeat_region 4946 5041 . ? . description=trf scaffold_759 . repeat_region 4966 5301 . ? . description=trf scaffold_759 . repeat_region 5057 5125 . ? . description=trf scaffold_759 . repeat_region 5141 5209 . ? . description=trf scaffold_759 . repeat_region 5199 5232 . ? . description=trf scaffold_759 . repeat_region 5215 5326 . ? . description=trf scaffold_759 . repeat_region 5223 5325 . ? . description=trf scaffold_759 . repeat_region 6014 7272 . ? . description=dust scaffold_759 . repeat_region 8082 8090 . ? . description=dust scaffold_759 ensembl protein_coding_gene 1782 2690 . + . ID=Phyra86497;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_759000001;logic_name=jgi_phyra1 scaffold_759 ensembl transcript 1782 2690 . + . ID=Phyra86497;Parent=Phyra86497;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_759 . CDS 1782 2690 . + 0 ID=Phyra86497;Parent=Phyra86497;rank=1 scaffold_759 . exon 1782 2690 . + . ID=Phyra86497.1;Parent=Phyra86497;constitutive=1;rank=1 scaffold_759 ensembl protein_coding_gene 3453 7804 . + . ID=Phyra86498;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_759000002;logic_name=jgi_phyra1 scaffold_759 ensembl transcript 3453 7804 . + . ID=Phyra86498;Parent=Phyra86498;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_759 . CDS 3453 3944 . + 0 ID=Phyra86498;Parent=Phyra86498;rank=1 scaffold_759 . exon 3453 3944 . + . ID=Phyra86498.1;Parent=Phyra86498;constitutive=1;rank=1 scaffold_759 . CDS 4022 4286 . + 0 ID=Phyra86498;Parent=Phyra86498;rank=2 scaffold_759 . exon 4022 4286 . + . ID=Phyra86498.2;Parent=Phyra86498;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_759 . CDS 4638 5340 . + 0 ID=Phyra86498;Parent=Phyra86498;rank=3 scaffold_759 . exon 4638 5340 . + . ID=Phyra86498.3;Parent=Phyra86498;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_759 . CDS 5712 5735 . + 0 ID=Phyra86498;Parent=Phyra86498;rank=4 scaffold_759 . exon 5712 5735 . + . ID=Phyra86498.4;Parent=Phyra86498;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_759 . CDS 7318 7804 . + 0 ID=Phyra86498;Parent=Phyra86498;rank=5 scaffold_759 . exon 7318 7804 . + . ID=Phyra86498.5;Parent=Phyra86498;constitutive=1;ensembl_phase=2;rank=5 ##gff-version 3 ##sequence-region scaffold_762 1 8689 scaffold_762 . repeat_region 931 972 . ? . description=trf scaffold_762 . repeat_region 1288 7441 . ? . description=dust scaffold_762 ensembl protein_coding_gene 1084 1287 . - . ID=Phyra53004;biotype=protein_coding;external_name=gwEuk.762.1.1;logic_name=jgi_phyra1 scaffold_762 ensembl transcript 1084 1287 . - . ID=Phyra53004;Parent=Phyra53004;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_762 . CDS 1084 1287 . - 0 ID=Phyra53004;Parent=Phyra53004;rank=1 scaffold_762 . exon 1084 1287 . - . ID=Phyra53004.1;Parent=Phyra53004;constitutive=1;rank=1 scaffold_762 ensembl protein_coding_gene 15 692 . + . ID=Phyra86499;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_762000001;logic_name=jgi_phyra1 scaffold_762 ensembl transcript 15 692 . + . ID=Phyra86499;Parent=Phyra86499;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_762 . CDS 15 692 . + 0 ID=Phyra86499;Parent=Phyra86499;rank=1 scaffold_762 . exon 15 692 . + . ID=Phyra86499.1;Parent=Phyra86499;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_758 1 8694 scaffold_758 . repeat_region 1538 6607 . ? . description=dust scaffold_758 ensembl protein_coding_gene 6852 8042 . + . ID=Phyra86496;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_758000001;logic_name=jgi_phyra1 scaffold_758 ensembl transcript 6852 8042 . + . ID=Phyra86496;Parent=Phyra86496;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_758 . CDS 6852 7298 . + 0 ID=Phyra86496;Parent=Phyra86496;rank=1 scaffold_758 . exon 6852 7298 . + . ID=Phyra86496.1;Parent=Phyra86496;constitutive=1;rank=1 scaffold_758 . CDS 7424 7697 . + 0 ID=Phyra86496;Parent=Phyra86496;rank=2 scaffold_758 . exon 7424 7697 . + . ID=Phyra86496.2;Parent=Phyra86496;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_758 . CDS 7818 7912 . + 0 ID=Phyra86496;Parent=Phyra86496;rank=3 scaffold_758 . exon 7818 7912 . + . ID=Phyra86496.3;Parent=Phyra86496;constitutive=1;ensembl_phase=1;rank=3 scaffold_758 . CDS 7992 8042 . + 0 ID=Phyra86496;Parent=Phyra86496;rank=4 scaffold_758 . exon 7992 8042 . + . ID=Phyra86496.4;Parent=Phyra86496;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_757 1 8699 scaffold_757 . repeat_region 2247 7777 . ? . description=dust scaffold_757 . repeat_region 7778 8677 . - . description=GypsyPi-1c_I-int scaffold_757 . biological_region 7916 7919 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_756 1 8702 scaffold_756 . repeat_region 1050 5478 . ? . description=dust scaffold_756 . repeat_region 7305 7326 . ? . description=trf scaffold_756 ensembl protein_coding_gene 5826 7853 . + . ID=Phyra86495;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_756000001;logic_name=jgi_phyra1 scaffold_756 ensembl transcript 5826 7853 . + . ID=Phyra86495;Parent=Phyra86495;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_756 . CDS 5826 7853 . + 0 ID=Phyra86495;Parent=Phyra86495;rank=1 scaffold_756 . exon 5826 7853 . + . ID=Phyra86495.1;Parent=Phyra86495;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_749 1 8709 scaffold_749 . repeat_region 3203 3237 . ? . description=trf scaffold_749 . biological_region 3710 3712 0.999 + . logic_name=eponine scaffold_749 . repeat_region 5837 5858 . ? . description=dust scaffold_749 . biological_region 6572 6577 0.999 + . logic_name=eponine scaffold_749 . biological_region 6594 6598 0.999 - . logic_name=eponine scaffold_749 ensembl protein_coding_gene 661 2580 . + . ID=Phyra86488;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_749000001;logic_name=jgi_phyra1 scaffold_749 ensembl transcript 661 2580 . + . ID=Phyra86488;Parent=Phyra86488;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_749 . CDS 661 2580 . + 0 ID=Phyra86488;Parent=Phyra86488;rank=1 scaffold_749 . exon 661 2580 . + . ID=Phyra86488.1;Parent=Phyra86488;constitutive=1;rank=1 scaffold_749 ensembl protein_coding_gene 5818 6988 . + . ID=Phyra86490;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_749000003;logic_name=jgi_phyra1 scaffold_749 ensembl transcript 5818 6988 . + . ID=Phyra86490;Parent=Phyra86490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_749 . CDS 5818 5902 . + 0 ID=Phyra86490;Parent=Phyra86490;rank=1 scaffold_749 . exon 5818 5902 . + . ID=Phyra86490.1;Parent=Phyra86490;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_749 . CDS 5969 6296 . + 0 ID=Phyra86490;Parent=Phyra86490;rank=2 scaffold_749 . exon 5969 6296 . + . ID=Phyra86490.2;Parent=Phyra86490;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_749 . CDS 6362 6708 . + 0 ID=Phyra86490;Parent=Phyra86490;rank=3 scaffold_749 . exon 6362 6708 . + . ID=Phyra86490.3;Parent=Phyra86490;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_749 . CDS 6813 6988 . + 0 ID=Phyra86490;Parent=Phyra86490;rank=4 scaffold_749 . exon 6813 6988 . + . ID=Phyra86490.4;Parent=Phyra86490;constitutive=1;ensembl_phase=1;rank=4 scaffold_749 ensembl protein_coding_gene 7234 8158 . + . ID=Phyra86491;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_749000004;logic_name=jgi_phyra1 scaffold_749 ensembl transcript 7234 8158 . + . ID=Phyra86491;Parent=Phyra86491;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_749 . CDS 7234 7298 . + 0 ID=Phyra86491;Parent=Phyra86491;rank=1 scaffold_749 . exon 7234 7298 . + . ID=Phyra86491.1;Parent=Phyra86491;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_749 . CDS 7354 7590 . + 0 ID=Phyra86491;Parent=Phyra86491;rank=2 scaffold_749 . exon 7354 7590 . + . ID=Phyra86491.2;Parent=Phyra86491;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_749 . CDS 7642 8158 . + 0 ID=Phyra86491;Parent=Phyra86491;rank=3 scaffold_749 . exon 7642 8158 . + . ID=Phyra86491.3;Parent=Phyra86491;constitutive=1;ensembl_phase=2;rank=3 scaffold_749 ensembl protein_coding_gene 2915 5653 . - . ID=Phyra97195;biotype=protein_coding;external_name=C_scaffold_749000004;logic_name=jgi_phyra1 scaffold_749 ensembl transcript 2915 5653 . - . ID=Phyra97195;Parent=Phyra97195;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_749 . CDS 2915 2932 . - 0 ID=Phyra97195;Parent=Phyra97195;rank=9 scaffold_749 . exon 2915 2932 . - . ID=Phyra97195.9;Parent=Phyra97195;constitutive=1;rank=9 scaffold_749 . CDS 3007 3276 . - 0 ID=Phyra97195;Parent=Phyra97195;rank=8 scaffold_749 . exon 3007 3276 . - . ID=Phyra97195.8;Parent=Phyra97195;constitutive=1;rank=8 scaffold_749 . CDS 3524 3975 . - 0 ID=Phyra97195;Parent=Phyra97195;rank=7 scaffold_749 . exon 3524 3975 . - . ID=Phyra97195.7;Parent=Phyra97195;constitutive=1;ensembl_phase=1;rank=7 scaffold_749 . CDS 4179 4227 . - 0 ID=Phyra97195;Parent=Phyra97195;rank=6 scaffold_749 . exon 4179 4227 . - . ID=Phyra97195.6;Parent=Phyra97195;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_749 . CDS 4289 4401 . - 0 ID=Phyra97195;Parent=Phyra97195;rank=5 scaffold_749 . exon 4289 4401 . - . ID=Phyra97195.5;Parent=Phyra97195;constitutive=1;ensembl_phase=1;rank=5 scaffold_749 . CDS 4475 4535 . - 0 ID=Phyra97195;Parent=Phyra97195;rank=4 scaffold_749 . exon 4475 4535 . - . ID=Phyra97195.4;Parent=Phyra97195;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_749 . CDS 4606 4688 . - 0 ID=Phyra97195;Parent=Phyra97195;rank=3 scaffold_749 . exon 4606 4688 . - . ID=Phyra97195.3;Parent=Phyra97195;constitutive=1;ensembl_phase=1;rank=3 scaffold_749 . CDS 4774 5143 . - 0 ID=Phyra97195;Parent=Phyra97195;rank=2 scaffold_749 . exon 4774 5143 . - . ID=Phyra97195.2;Parent=Phyra97195;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_749 . CDS 5198 5653 . - 0 ID=Phyra97195;Parent=Phyra97195;rank=1 scaffold_749 . exon 5198 5653 . - . ID=Phyra97195.1;Parent=Phyra97195;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_752 1 8711 scaffold_752 . repeat_region 1179 1186 . ? . description=dust scaffold_752 . repeat_region 1645 6945 . ? . description=dust scaffold_752 ensembl protein_coding_gene 17 369 . - . ID=Phyra86492;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_752000001;logic_name=jgi_phyra1 scaffold_752 ensembl transcript 17 369 . - . ID=Phyra86492;Parent=Phyra86492;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_752 . CDS 17 369 . - 0 ID=Phyra86492;Parent=Phyra86492;rank=1 scaffold_752 . exon 17 369 . - . ID=Phyra86492.1;Parent=Phyra86492;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_752 ensembl protein_coding_gene 7841 8579 . + . ID=Phyra86493;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_752000002;logic_name=jgi_phyra1 scaffold_752 ensembl transcript 7841 8579 . + . ID=Phyra86493;Parent=Phyra86493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_752 . CDS 7841 8531 . + 0 ID=Phyra86493;Parent=Phyra86493;rank=1 scaffold_752 . exon 7841 8531 . + . ID=Phyra86493.1;Parent=Phyra86493;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_752 . CDS 8551 8579 . + 0 ID=Phyra86493;Parent=Phyra86493;rank=2 scaffold_752 . exon 8551 8579 . + . ID=Phyra86493.2;Parent=Phyra86493;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_753 1 8713 scaffold_753 . repeat_region 2128 7270 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_750 1 8714 scaffold_750 . repeat_region 616 635 . ? . description=dust scaffold_750 . repeat_region 832 6674 . ? . description=dust scaffold_750 . repeat_region 6759 6801 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_754 1 8715 scaffold_754 . repeat_region 3619 3650 . ? . description=trf scaffold_754 . repeat_region 4124 4173 . ? . description=dust scaffold_754 . repeat_region 5185 7329 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_755 1 8721 scaffold_755 . repeat_region 1705 7779 . ? . description=dust scaffold_755 ensembl protein_coding_gene 514 1207 . + . ID=Phyra86494;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_755000001;logic_name=jgi_phyra1 scaffold_755 ensembl transcript 514 1207 . + . ID=Phyra86494;Parent=Phyra86494;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_755 . CDS 514 1144 . + 0 ID=Phyra86494;Parent=Phyra86494;rank=1 scaffold_755 . exon 514 1144 . + . ID=Phyra86494.1;Parent=Phyra86494;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_755 . CDS 1194 1207 . + 0 ID=Phyra86494;Parent=Phyra86494;rank=2 scaffold_755 . exon 1194 1207 . + . ID=Phyra86494.2;Parent=Phyra86494;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_746 1 8727 scaffold_746 . repeat_region 1105 1117 . ? . description=dust scaffold_746 . repeat_region 1644 4148 . ? . description=dust scaffold_746 . repeat_region 5535 7214 . ? . description=dust scaffold_746 ensembl protein_coding_gene 4227 5207 . - . ID=Phyra52929;biotype=protein_coding;external_name=gwEuk.746.2.1;logic_name=jgi_phyra1 scaffold_746 ensembl transcript 4227 5207 . - . ID=Phyra52929;Parent=Phyra52929;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_746 . CDS 4227 5207 . - 0 ID=Phyra52929;Parent=Phyra52929;rank=1 scaffold_746 . exon 4227 5207 . - . ID=Phyra52929.1;Parent=Phyra52929;constitutive=1;rank=1 scaffold_746 ensembl protein_coding_gene 8231 8708 . + . ID=Phyra86485;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_746000002;logic_name=jgi_phyra1 scaffold_746 ensembl transcript 8231 8708 . + . ID=Phyra86485;Parent=Phyra86485;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_746 . CDS 8231 8408 . + 0 ID=Phyra86485;Parent=Phyra86485;rank=1 scaffold_746 . exon 8231 8408 . + . ID=Phyra86485.1;Parent=Phyra86485;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_746 . CDS 8475 8625 . + 0 ID=Phyra86485;Parent=Phyra86485;rank=2 scaffold_746 . exon 8475 8625 . + . ID=Phyra86485.2;Parent=Phyra86485;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_746 . CDS 8694 8708 . + 0 ID=Phyra86485;Parent=Phyra86485;rank=3 scaffold_746 . exon 8694 8708 . + . ID=Phyra86485.3;Parent=Phyra86485;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_743 1 8733 scaffold_743 . repeat_region 2000 7362 . ? . description=dust scaffold_743 ensembl protein_coding_gene 7548 8688 . - . ID=Phyra86480;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_743000001;logic_name=jgi_phyra1 scaffold_743 ensembl transcript 7548 8688 . - . ID=Phyra86480;Parent=Phyra86480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_743 . CDS 7548 7934 . - 0 ID=Phyra86480;Parent=Phyra86480;rank=3 scaffold_743 . exon 7548 7934 . - . ID=Phyra86480.3;Parent=Phyra86480;constitutive=1;rank=3 scaffold_743 . CDS 8009 8197 . - 0 ID=Phyra86480;Parent=Phyra86480;rank=2 scaffold_743 . exon 8009 8197 . - . ID=Phyra86480.2;Parent=Phyra86480;constitutive=1;rank=2 scaffold_743 . CDS 8294 8686 . - 0 ID=Phyra86480;Parent=Phyra86480;rank=1 scaffold_743 . exon 8294 8688 . - . ID=Phyra86480.1;Parent=Phyra86480;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_741 1 8735 scaffold_741 . repeat_region 294 311 . ? . description=dust scaffold_741 . repeat_region 614 627 . ? . description=dust scaffold_741 . repeat_region 838 6856 . ? . description=dust scaffold_741 . repeat_region 8242 8267 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_740 1 8738 scaffold_740 . biological_region 119 121 0.999 - . logic_name=eponine scaffold_740 . biological_region 750 755 0.999 - . logic_name=eponine scaffold_740 . biological_region 1192 1198 0.999 + . logic_name=eponine scaffold_740 . biological_region 1241 1243 0.999 + . logic_name=eponine scaffold_740 . biological_region 1419 1425 0.999 - . logic_name=eponine scaffold_740 . biological_region 1475 1478 0.999 + . logic_name=eponine scaffold_740 . biological_region 1478 1484 0.999 - . logic_name=eponine scaffold_740 . repeat_region 1622 7053 . ? . description=dust scaffold_740 ensembl protein_coding_gene 8059 8502 . + . ID=Phyra86477;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_740000001;logic_name=jgi_phyra1 scaffold_740 ensembl transcript 8059 8502 . + . ID=Phyra86477;Parent=Phyra86477;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_740 . CDS 8059 8502 . + 0 ID=Phyra86477;Parent=Phyra86477;rank=1 scaffold_740 . exon 8059 8502 . + . ID=Phyra86477.1;Parent=Phyra86477;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_760 1 8739 scaffold_760 . repeat_region 689 738 . ? . description=dust scaffold_760 . repeat_region 2008 7204 . ? . description=dust scaffold_760 . repeat_region 7769 7792 . ? . description=trf scaffold_760 . repeat_region 7769 7792 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_793 1 8743 scaffold_793 . biological_region 25 27 0.999 + . logic_name=eponine scaffold_793 . biological_region 63 68 0.999 + . logic_name=eponine scaffold_793 . biological_region 128 135 0.999 - . logic_name=eponine scaffold_793 . biological_region 129 135 0.999 + . logic_name=eponine scaffold_793 . repeat_region 1400 7872 . ? . description=dust scaffold_793 . biological_region 8416 8420 0.999 + . logic_name=eponine scaffold_793 . biological_region 8467 8472 0.999 + . logic_name=eponine scaffold_793 . biological_region 8496 8497 0.999 - . logic_name=eponine scaffold_793 . biological_region 8533 8535 0.999 - . logic_name=eponine scaffold_793 . biological_region 8570 8574 0.999 + . logic_name=eponine scaffold_793 ensembl protein_coding_gene 195 512 . + . ID=Phyra86536;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_793000001;logic_name=jgi_phyra1 scaffold_793 ensembl transcript 195 512 . + . ID=Phyra86536;Parent=Phyra86536;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_793 . CDS 195 512 . + 0 ID=Phyra86536;Parent=Phyra86536;rank=1 scaffold_793 . exon 195 512 . + . ID=Phyra86536.1;Parent=Phyra86536;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_738 1 8746 scaffold_738 . repeat_region 1396 4389 . ? . description=dust scaffold_738 . repeat_region 5159 5167 . ? . description=dust scaffold_738 . repeat_region 5449 5491 . ? . description=trf scaffold_738 . repeat_region 5779 5828 . ? . description=trf scaffold_738 . repeat_region 5779 5840 . ? . description=dust scaffold_738 . repeat_region 6310 6818 . ? . description=dust scaffold_738 . repeat_region 6942 6959 . ? . description=dust scaffold_738 ensembl pseudogenic_tRNA 8457 8521 . - . ID=EPrPRAG00000000202;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_738 ensembl transcript 8457 8521 . - . ID=EPrPRAT00000000202;Parent=EPrPRAG00000000202;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_738 . exon 8457 8521 . - . ID=EPrPRAE00000000202;Parent=EPrPRAT00000000202;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_738 ensembl protein_coding_gene 75 885 . - . ID=Phyra86475;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_738000001;logic_name=jgi_phyra1 scaffold_738 ensembl transcript 75 885 . - . ID=Phyra86475;Parent=Phyra86475;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_738 . CDS 75 885 . - 0 ID=Phyra86475;Parent=Phyra86475;rank=1 scaffold_738 . exon 75 885 . - . ID=Phyra86475.1;Parent=Phyra86475;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_736 1 8764 scaffold_736 . repeat_region 1237 1267 . ? . description=dust scaffold_736 . repeat_region 1373 1393 . ? . description=trf scaffold_736 . repeat_region 1373 1393 . ? . description=dust scaffold_736 . repeat_region 2059 2066 . ? . description=dust scaffold_736 . repeat_region 2150 7305 . ? . description=dust scaffold_736 . repeat_region 7908 8208 . + . description=GypsyPi-1c_LTR scaffold_736 ensembl protein_coding_gene 7306 7596 . + . ID=Phyra52839;biotype=protein_coding;external_name=gwEuk.736.1.1;logic_name=jgi_phyra1 scaffold_736 ensembl transcript 7306 7596 . + . ID=Phyra52839;Parent=Phyra52839;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_736 . CDS 7306 7596 . + 0 ID=Phyra52839;Parent=Phyra52839;rank=1 scaffold_736 . exon 7306 7596 . + . ID=Phyra52839.1;Parent=Phyra52839;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_747 1 8770 scaffold_747 . repeat_region 558 582 . ? . description=trf scaffold_747 . repeat_region 1192 1241 . ? . description=dust scaffold_747 . biological_region 1736 1741 0.999 + . logic_name=eponine scaffold_747 . biological_region 1738 1739 0.999 - . logic_name=eponine scaffold_747 . biological_region 1757 1763 0.999 + . logic_name=eponine scaffold_747 . biological_region 1761 1766 0.999 - . logic_name=eponine scaffold_747 . biological_region 2313 2314 0.999 - . logic_name=eponine scaffold_747 . repeat_region 2367 7076 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_731 1 8777 scaffold_731 . biological_region 1332 1334 0.999 - . logic_name=eponine scaffold_731 . biological_region 1388 1392 0.999 + . logic_name=eponine scaffold_731 . biological_region 1409 1410 0.999 + . logic_name=eponine scaffold_731 . repeat_region 2247 7501 . ? . description=dust scaffold_731 . biological_region 7637 7641 0.999 + . logic_name=eponine scaffold_731 . biological_region 8582 8584 0.999 + . logic_name=eponine scaffold_731 ensembl protein_coding_gene 337 876 . + . ID=Phyra86466;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_731000001;logic_name=jgi_phyra1 scaffold_731 ensembl transcript 337 876 . + . ID=Phyra86466;Parent=Phyra86466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_731 . CDS 337 876 . + 0 ID=Phyra86466;Parent=Phyra86466;rank=1 scaffold_731 . exon 337 876 . + . ID=Phyra86466.1;Parent=Phyra86466;constitutive=1;rank=1 scaffold_731 ensembl protein_coding_gene 7786 8339 . + . ID=Phyra86467;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_731000002;logic_name=jgi_phyra1 scaffold_731 ensembl transcript 7786 8339 . + . ID=Phyra86467;Parent=Phyra86467;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_731 . CDS 7786 7800 . + 0 ID=Phyra86467;Parent=Phyra86467;rank=1 scaffold_731 . exon 7786 7800 . + . ID=Phyra86467.1;Parent=Phyra86467;constitutive=1;rank=1 scaffold_731 . CDS 7865 8053 . + 0 ID=Phyra86467;Parent=Phyra86467;rank=2 scaffold_731 . exon 7865 8053 . + . ID=Phyra86467.2;Parent=Phyra86467;constitutive=1;rank=2 scaffold_731 . CDS 8121 8339 . + 0 ID=Phyra86467;Parent=Phyra86467;rank=3 scaffold_731 . exon 8121 8339 . + . ID=Phyra86467.3;Parent=Phyra86467;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_739 1 8777 scaffold_739 . repeat_region 979 992 . ? . description=dust scaffold_739 . repeat_region 1492 1499 . ? . description=dust scaffold_739 . repeat_region 2347 2391 . ? . description=trf scaffold_739 . repeat_region 2389 2414 . ? . description=trf scaffold_739 . repeat_region 2421 2455 . ? . description=trf scaffold_739 . repeat_region 2459 2480 . ? . description=trf scaffold_739 . repeat_region 2621 7618 . ? . description=dust scaffold_739 . biological_region 7788 7792 0.999 + . logic_name=eponine scaffold_739 . repeat_region 8007 8569 . ? . description=trf scaffold_739 . repeat_region 8007 8578 . ? . description=trf scaffold_739 . biological_region 8654 8654 0.999 - . logic_name=eponine scaffold_739 ensembl protein_coding_gene 7767 8753 . + . ID=Phyra86476;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_739000001;logic_name=jgi_phyra1 scaffold_739 ensembl transcript 7767 8753 . + . ID=Phyra86476;Parent=Phyra86476;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_739 . CDS 7767 8753 . + 0 ID=Phyra86476;Parent=Phyra86476;rank=1 scaffold_739 . exon 7767 8753 . + . ID=Phyra86476.1;Parent=Phyra86476;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_729 1 8782 scaffold_729 . biological_region 506 510 0.999 + . logic_name=eponine scaffold_729 . repeat_region 1860 2623 . ? . description=dust scaffold_729 . repeat_region 3887 7586 . ? . description=dust scaffold_729 ensembl protein_coding_gene 7586 7996 . + . ID=Phyra52765;biotype=protein_coding;external_name=gwEuk.729.2.1;logic_name=jgi_phyra1 scaffold_729 ensembl transcript 7586 7996 . + . ID=Phyra52765;Parent=Phyra52765;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_729 . CDS 7586 7996 . + 0 ID=Phyra52765;Parent=Phyra52765;rank=1 scaffold_729 . exon 7586 7996 . + . ID=Phyra52765.1;Parent=Phyra52765;constitutive=1;rank=1 scaffold_729 ensembl protein_coding_gene 3108 3548 . + . ID=Phyra86463;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_729000001;logic_name=jgi_phyra1 scaffold_729 ensembl transcript 3108 3548 . + . ID=Phyra86463;Parent=Phyra86463;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_729 . CDS 3108 3548 . + 0 ID=Phyra86463;Parent=Phyra86463;rank=1 scaffold_729 . exon 3108 3548 . + . ID=Phyra86463.1;Parent=Phyra86463;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_745 1 8782 scaffold_745 . repeat_region 29 1349 . - . description=GypsyPi-1c_I-int scaffold_745 . repeat_region 1625 6860 . ? . description=dust scaffold_745 . repeat_region 7724 7787 . ? . description=dust scaffold_745 . repeat_region 7850 7857 . ? . description=dust scaffold_745 . biological_region 7994 7997 0.999 + . logic_name=eponine scaffold_745 . repeat_region 8362 8449 . ? . description=trf scaffold_745 . repeat_region 8411 8476 . ? . description=trf scaffold_745 ensembl protein_coding_gene 356 1070 . - . ID=Phyra86483;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_745000001;logic_name=jgi_phyra1 scaffold_745 ensembl transcript 356 1070 . - . ID=Phyra86483;Parent=Phyra86483;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_745 . CDS 356 373 . - 0 ID=Phyra86483;Parent=Phyra86483;rank=4 scaffold_745 . exon 356 373 . - . ID=Phyra86483.4;Parent=Phyra86483;constitutive=1;rank=4 scaffold_745 . CDS 396 605 . - 0 ID=Phyra86483;Parent=Phyra86483;rank=3 scaffold_745 . exon 396 605 . - . ID=Phyra86483.3;Parent=Phyra86483;constitutive=1;rank=3 scaffold_745 . CDS 648 828 . - 0 ID=Phyra86483;Parent=Phyra86483;rank=2 scaffold_745 . exon 648 828 . - . ID=Phyra86483.2;Parent=Phyra86483;constitutive=1;ensembl_phase=2;rank=2 scaffold_745 . CDS 901 1070 . - 0 ID=Phyra86483;Parent=Phyra86483;rank=1 scaffold_745 . exon 901 1070 . - . ID=Phyra86483.1;Parent=Phyra86483;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_734 1 8784 scaffold_734 . repeat_region 878 932 . ? . description=trf scaffold_734 . repeat_region 1191 1247 . ? . description=trf scaffold_734 . repeat_region 2030 2079 . ? . description=dust scaffold_734 . repeat_region 3574 8046 . ? . description=dust scaffold_734 ensembl protein_coding_gene 442 1327 . - . ID=Phyra86471;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_734000001;logic_name=jgi_phyra1 scaffold_734 ensembl transcript 442 1327 . - . ID=Phyra86471;Parent=Phyra86471;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_734 . CDS 442 1225 . - 0 ID=Phyra86471;Parent=Phyra86471;rank=2 scaffold_734 . exon 442 1225 . - . ID=Phyra86471.2;Parent=Phyra86471;constitutive=1;ensembl_phase=2;rank=2 scaffold_734 . CDS 1269 1327 . - 0 ID=Phyra86471;Parent=Phyra86471;rank=1 scaffold_734 . exon 1269 1327 . - . ID=Phyra86471.1;Parent=Phyra86471;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_751 1 8786 scaffold_751 . repeat_region 245 1716 . - . description=Polinton-1_PI scaffold_751 . repeat_region 573 581 . ? . description=dust scaffold_751 . repeat_region 1719 7860 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_727 1 8792 scaffold_727 . biological_region 671 677 0.999 - . logic_name=eponine scaffold_727 . repeat_region 1043 6439 . ? . description=dust scaffold_727 . repeat_region 6440 6643 . + . description=Polinton-1_PI scaffold_727 . repeat_region 7789 8616 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_726 1 8796 scaffold_726 . biological_region 1469 1473 0.999 + . logic_name=eponine scaffold_726 . repeat_region 1596 4067 . ? . description=dust scaffold_726 . repeat_region 5404 6392 . ? . description=dust scaffold_726 . biological_region 6749 6749 0.999 + . logic_name=eponine scaffold_726 . biological_region 6941 6943 0.999 - . logic_name=eponine scaffold_726 . biological_region 6996 6998 0.999 + . logic_name=eponine scaffold_726 ensembl protein_coding_gene 25 820 . - . ID=Phyra86457;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_726000001;logic_name=jgi_phyra1 scaffold_726 ensembl transcript 25 820 . - . ID=Phyra86457;Parent=Phyra86457;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_726 . CDS 25 820 . - 0 ID=Phyra86457;Parent=Phyra86457;rank=1 scaffold_726 . exon 25 820 . - . ID=Phyra86457.1;Parent=Phyra86457;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_726 ensembl protein_coding_gene 4949 7220 . + . ID=Phyra86458;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_726000002;logic_name=jgi_phyra1 scaffold_726 ensembl transcript 4949 7220 . + . ID=Phyra86458;Parent=Phyra86458;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_726 . CDS 4949 5371 . + 0 ID=Phyra86458;Parent=Phyra86458;rank=1 scaffold_726 . exon 4949 5371 . + . ID=Phyra86458.1;Parent=Phyra86458;constitutive=1;rank=1 scaffold_726 . CDS 6399 7220 . + 0 ID=Phyra86458;Parent=Phyra86458;rank=2 scaffold_726 . exon 6399 7220 . + . ID=Phyra86458.2;Parent=Phyra86458;constitutive=1;rank=2 scaffold_726 ensembl protein_coding_gene 7935 8788 . + . ID=Phyra86459;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_726000003;logic_name=jgi_phyra1 scaffold_726 ensembl transcript 7935 8788 . + . ID=Phyra86459;Parent=Phyra86459;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_726 . CDS 7935 8788 . + 0 ID=Phyra86459;Parent=Phyra86459;rank=1 scaffold_726 . exon 7935 8788 . + . ID=Phyra86459.1;Parent=Phyra86459;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_732 1 8797 scaffold_732 . biological_region 233 235 0.999 + . logic_name=eponine scaffold_732 . repeat_region 1339 6945 . ? . description=dust scaffold_732 . repeat_region 7876 7888 . ? . description=dust scaffold_732 . repeat_region 8401 8408 . ? . description=dust scaffold_732 ensembl protein_coding_gene 15 429 . - . ID=Phyra86468;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_732000001;logic_name=jgi_phyra1 scaffold_732 ensembl transcript 15 429 . - . ID=Phyra86468;Parent=Phyra86468;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_732 . CDS 15 429 . - 0 ID=Phyra86468;Parent=Phyra86468;rank=1 scaffold_732 . exon 15 429 . - . ID=Phyra86468.1;Parent=Phyra86468;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_730 1 8806 scaffold_730 . biological_region 470 478 0.999 + . logic_name=eponine scaffold_730 . repeat_region 1873 2734 . ? . description=dust scaffold_730 . repeat_region 3824 7704 . ? . description=dust scaffold_730 . repeat_region 7705 8803 . + . description=GypsyPi-1c_I-int scaffold_730 ensembl protein_coding_gene 7894 8665 . + . ID=Phyra86465;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_730000001;logic_name=jgi_phyra1 scaffold_730 ensembl transcript 7894 8665 . + . ID=Phyra86465;Parent=Phyra86465;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_730 . CDS 7894 8295 . + 0 ID=Phyra86465;Parent=Phyra86465;rank=1 scaffold_730 . exon 7894 8295 . + . ID=Phyra86465.1;Parent=Phyra86465;constitutive=1;rank=1 scaffold_730 . CDS 8359 8568 . + 0 ID=Phyra86465;Parent=Phyra86465;rank=2 scaffold_730 . exon 8359 8568 . + . ID=Phyra86465.2;Parent=Phyra86465;constitutive=1;rank=2 scaffold_730 . CDS 8627 8665 . + 0 ID=Phyra86465;Parent=Phyra86465;rank=3 scaffold_730 . exon 8627 8665 . + . ID=Phyra86465.3;Parent=Phyra86465;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_737 1 8816 scaffold_737 . repeat_region 858 870 . ? . description=dust scaffold_737 . repeat_region 1393 2176 . ? . description=dust scaffold_737 . repeat_region 4058 6050 . ? . description=dust scaffold_737 . repeat_region 7037 7447 . ? . description=dust scaffold_737 . repeat_region 8074 8102 . ? . description=trf scaffold_737 ensembl protein_coding_gene 6551 6874 . - . ID=Phyra52842;biotype=protein_coding;external_name=gwEuk.737.2.1;logic_name=jgi_phyra1 scaffold_737 ensembl transcript 6551 6874 . - . ID=Phyra52842;Parent=Phyra52842;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_737 . CDS 6551 6874 . - 0 ID=Phyra52842;Parent=Phyra52842;rank=1 scaffold_737 . exon 6551 6874 . - . ID=Phyra52842.1;Parent=Phyra52842;constitutive=1;rank=1 scaffold_737 ensembl protein_coding_gene 7451 8816 . - . ID=Phyra86474;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_737000002;logic_name=jgi_phyra1 scaffold_737 ensembl transcript 7451 8816 . - . ID=Phyra86474;Parent=Phyra86474;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_737 . CDS 7451 8053 . - 0 ID=Phyra86474;Parent=Phyra86474;rank=3 scaffold_737 . exon 7451 8053 . - . ID=Phyra86474.3;Parent=Phyra86474;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_737 . CDS 8104 8664 . - 0 ID=Phyra86474;Parent=Phyra86474;rank=2 scaffold_737 . exon 8104 8664 . - . ID=Phyra86474.2;Parent=Phyra86474;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_737 . CDS 8725 8816 . - 0 ID=Phyra86474;Parent=Phyra86474;rank=1 scaffold_737 . exon 8725 8816 . - . ID=Phyra86474.1;Parent=Phyra86474;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_725 1 8817 scaffold_725 . repeat_region 1901 1920 . ? . description=dust scaffold_725 . repeat_region 1901 1927 . ? . description=trf scaffold_725 . repeat_region 1937 7589 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_735 1 8818 scaffold_735 . repeat_region 1016 1065 . ? . description=dust scaffold_735 . repeat_region 2325 7250 . ? . description=dust scaffold_735 ensembl protein_coding_gene 8294 8695 . - . ID=Phyra86472;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_735000001;logic_name=jgi_phyra1 scaffold_735 ensembl transcript 8294 8695 . - . ID=Phyra86472;Parent=Phyra86472;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_735 . CDS 8294 8695 . - 0 ID=Phyra86472;Parent=Phyra86472;rank=1 scaffold_735 . exon 8294 8695 . - . ID=Phyra86472.1;Parent=Phyra86472;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_744 1 8818 scaffold_744 . repeat_region 1945 1963 . ? . description=dust scaffold_744 . repeat_region 2047 3439 . ? . description=dust scaffold_744 . repeat_region 6281 6299 . ? . description=dust scaffold_744 . biological_region 6681 6682 0.999 - . logic_name=eponine scaffold_744 ensembl pseudogene 1069 1946 . - . ID=Phyra52922;biotype=pseudogene;external_name=gwEuk.744.1.1;logic_name=jgi_phyra1 scaffold_744 ensembl pseudogene 1069 1946 . - . ID=Phyra52922;Parent=Phyra52922;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_744 . exon 1069 1239 . - . ID=Phyra52922.2;Parent=Phyra52922;constitutive=1;rank=2 scaffold_744 . exon 1725 1946 . - . ID=Phyra52922.1;Parent=Phyra52922;constitutive=1;rank=1 scaffold_744 ensembl protein_coding_gene 6335 6820 . + . ID=Phyra72429;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_744000001;logic_name=jgi_phyra1 scaffold_744 ensembl transcript 6335 6820 . + . ID=Phyra72429;Parent=Phyra72429;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_744 . CDS 6335 6820 . + 0 ID=Phyra72429;Parent=Phyra72429;rank=1 scaffold_744 . exon 6335 6820 . + . ID=Phyra72429.1;Parent=Phyra72429;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_721 1 8821 scaffold_721 . repeat_region 1470 6998 . ? . description=dust scaffold_721 ensembl protein_coding_gene 7143 7634 . + . ID=Phyra86451;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_721000001;logic_name=jgi_phyra1 scaffold_721 ensembl transcript 7143 7634 . + . ID=Phyra86451;Parent=Phyra86451;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_721 . CDS 7143 7634 . + 0 ID=Phyra86451;Parent=Phyra86451;rank=1 scaffold_721 . exon 7143 7634 . + . ID=Phyra86451.1;Parent=Phyra86451;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_719 1 8825 scaffold_719 . repeat_region 1255 6856 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_718 1 8826 scaffold_718 . biological_region 299 304 0.999 + . logic_name=eponine scaffold_718 . repeat_region 1328 4619 . ? . description=dust scaffold_718 . repeat_region 5191 5199 . ? . description=dust scaffold_718 . repeat_region 5721 6972 . ? . description=dust scaffold_718 . repeat_region 8409 8425 . ? . description=dust scaffold_718 ensembl protein_coding_gene 4767 5722 . - . ID=Phyra52633;biotype=protein_coding;external_name=gwEuk.718.1.1;logic_name=jgi_phyra1 scaffold_718 ensembl transcript 4767 5722 . - . ID=Phyra52633;Parent=Phyra52633;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_718 . CDS 4767 5184 . - 0 ID=Phyra52633;Parent=Phyra52633;rank=2 scaffold_718 . exon 4767 5184 . - . ID=Phyra52633.2;Parent=Phyra52633;constitutive=1;ensembl_phase=2;rank=2 scaffold_718 . CDS 5265 5722 . - 0 ID=Phyra52633;Parent=Phyra52633;rank=1 scaffold_718 . exon 5265 5722 . - . ID=Phyra52633.1;Parent=Phyra52633;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_718 ensembl protein_coding_gene 7603 8400 . - . ID=Phyra72427;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_718000001;logic_name=jgi_phyra1 scaffold_718 ensembl transcript 7603 8400 . - . ID=Phyra72427;Parent=Phyra72427;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_718 . CDS 7603 8400 . - 0 ID=Phyra72427;Parent=Phyra72427;rank=1 scaffold_718 . exon 7603 8400 . - . ID=Phyra72427.1;Parent=Phyra72427;constitutive=1;rank=1 scaffold_718 ensembl protein_coding_gene 5 399 . + . ID=Phyra86449;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_718000001;logic_name=jgi_phyra1 scaffold_718 ensembl transcript 5 399 . + . ID=Phyra86449;Parent=Phyra86449;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_718 . exon 5 399 . + . ID=Phyra86449.1;Parent=Phyra86449;constitutive=1;ensembl_phase=-1;rank=1 scaffold_718 . CDS 7 399 . + 0 ID=Phyra86449;Parent=Phyra86449;rank=1 ##gff-version 3 ##sequence-region scaffold_761 1 8829 scaffold_761 . biological_region 878 881 0.999 - . logic_name=eponine scaffold_761 . repeat_region 1323 6888 . ? . description=dust scaffold_761 . repeat_region 6890 8829 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_728 1 8837 scaffold_728 . repeat_region 934 1069 . ? . description=trf scaffold_728 . repeat_region 1041 1112 . ? . description=trf scaffold_728 . biological_region 2838 2839 0.999 - . logic_name=eponine scaffold_728 . repeat_region 3529 3536 . ? . description=dust scaffold_728 . biological_region 3897 3898 0.999 - . logic_name=eponine scaffold_728 . repeat_region 4030 4079 . ? . description=dust scaffold_728 . repeat_region 5145 7496 . ? . description=dust scaffold_728 ensembl protein_coding_gene 1488 3122 . - . ID=Phyra86460;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_728000001;logic_name=jgi_phyra1 scaffold_728 ensembl transcript 1488 3122 . - . ID=Phyra86460;Parent=Phyra86460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_728 . CDS 1488 3122 . - 0 ID=Phyra86460;Parent=Phyra86460;rank=1 scaffold_728 . exon 1488 3122 . - . ID=Phyra86460.1;Parent=Phyra86460;constitutive=1;rank=1 scaffold_728 ensembl protein_coding_gene 3488 4371 . + . ID=Phyra86461;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_728000002;logic_name=jgi_phyra1 scaffold_728 ensembl transcript 3488 4371 . + . ID=Phyra86461;Parent=Phyra86461;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_728 . CDS 3488 3515 . + 0 ID=Phyra86461;Parent=Phyra86461;rank=1 scaffold_728 . exon 3488 3515 . + . ID=Phyra86461.1;Parent=Phyra86461;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_728 . CDS 3579 4012 . + 0 ID=Phyra86461;Parent=Phyra86461;rank=2 scaffold_728 . exon 3579 4012 . + . ID=Phyra86461.2;Parent=Phyra86461;constitutive=1;ensembl_phase=1;rank=2 scaffold_728 . CDS 4261 4371 . + 0 ID=Phyra86461;Parent=Phyra86461;rank=3 scaffold_728 . exon 4261 4371 . + . ID=Phyra86461.3;Parent=Phyra86461;constitutive=1;rank=3 scaffold_728 ensembl protein_coding_gene 7533 8117 . - . ID=Phyra86462;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_728000003;logic_name=jgi_phyra1 scaffold_728 ensembl transcript 7533 8117 . - . ID=Phyra86462;Parent=Phyra86462;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_728 . CDS 7533 8117 . - 0 ID=Phyra86462;Parent=Phyra86462;rank=1 scaffold_728 . exon 7533 8117 . - . ID=Phyra86462.1;Parent=Phyra86462;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_714 1 8838 scaffold_714 . repeat_region 6753 7993 . ? . description=dust scaffold_714 ensembl protein_coding_gene 3708 5056 . + . ID=Phyra86443;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_714000001;logic_name=jgi_phyra1 scaffold_714 ensembl transcript 3708 5056 . + . ID=Phyra86443;Parent=Phyra86443;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_714 . CDS 3708 3718 . + 0 ID=Phyra86443;Parent=Phyra86443;rank=1 scaffold_714 . exon 3708 3718 . + . ID=Phyra86443.1;Parent=Phyra86443;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_714 . CDS 3782 3935 . + 0 ID=Phyra86443;Parent=Phyra86443;rank=2 scaffold_714 . exon 3782 3935 . + . ID=Phyra86443.2;Parent=Phyra86443;constitutive=1;ensembl_phase=2;rank=2 scaffold_714 . CDS 4003 4055 . + 0 ID=Phyra86443;Parent=Phyra86443;rank=3 scaffold_714 . exon 4003 4055 . + . ID=Phyra86443.3;Parent=Phyra86443;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_714 . CDS 4080 4197 . + 0 ID=Phyra86443;Parent=Phyra86443;rank=4 scaffold_714 . exon 4080 4197 . + . ID=Phyra86443.4;Parent=Phyra86443;constitutive=1;ensembl_phase=2;rank=4 scaffold_714 . CDS 4283 5056 . + 0 ID=Phyra86443;Parent=Phyra86443;rank=5 scaffold_714 . exon 4283 5056 . + . ID=Phyra86443.5;Parent=Phyra86443;constitutive=1;rank=5 scaffold_714 ensembl protein_coding_gene 5206 6396 . - . ID=Phyra86444;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_714000002;logic_name=jgi_phyra1 scaffold_714 ensembl transcript 5206 6396 . - . ID=Phyra86444;Parent=Phyra86444;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_714 . CDS 5206 6396 . - 0 ID=Phyra86444;Parent=Phyra86444;rank=1 scaffold_714 . exon 5206 6396 . - . ID=Phyra86444.1;Parent=Phyra86444;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_715 1 8847 scaffold_715 . repeat_region 1467 6959 . ? . description=dust scaffold_715 ensembl protein_coding_gene 346 1260 . - . ID=Phyra86445;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_715000001;logic_name=jgi_phyra1 scaffold_715 ensembl transcript 346 1260 . - . ID=Phyra86445;Parent=Phyra86445;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_715 . CDS 346 579 . - 0 ID=Phyra86445;Parent=Phyra86445;rank=3 scaffold_715 . exon 346 579 . - . ID=Phyra86445.3;Parent=Phyra86445;constitutive=1;rank=3 scaffold_715 . CDS 655 777 . - 0 ID=Phyra86445;Parent=Phyra86445;rank=2 scaffold_715 . exon 655 777 . - . ID=Phyra86445.2;Parent=Phyra86445;constitutive=1;rank=2 scaffold_715 . CDS 928 1260 . - 0 ID=Phyra86445;Parent=Phyra86445;rank=1 scaffold_715 . exon 928 1260 . - . ID=Phyra86445.1;Parent=Phyra86445;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_711 1 8857 scaffold_711 . repeat_region 192 199 . ? . description=dust scaffold_711 . repeat_region 730 5175 . ? . description=dust scaffold_711 . repeat_region 5676 5735 . ? . description=dust scaffold_711 . repeat_region 6150 6174 . ? . description=trf scaffold_711 . repeat_region 7338 7446 . + . description=(TGAG)n scaffold_711 . repeat_region 7339 7433 . ? . description=dust scaffold_711 . repeat_region 7342 7410 . ? . description=trf scaffold_711 . repeat_region 7343 7416 . ? . description=trf scaffold_711 . repeat_region 8365 8425 . ? . description=dust scaffold_711 . repeat_region 8665 8677 . ? . description=dust scaffold_711 ensembl tRNA_gene 7950 8023 . - . ID=EPrPRAG00000000145;biotype=tRNA;description=tRNA-Ile for anticodon UAU [Source:TRNASCAN_SE%3BAcc:tRNA-Ile];external_name=tRNA-Ile;logic_name=ncrna_eg scaffold_711 ensembl transcript 7950 8023 . - . ID=EPrPRAT00000000145;Parent=EPrPRAG00000000145;biotype=tRNA;logic_name=ncrna_eg scaffold_711 . exon 7950 8023 . - . ID=EPrPRAE00000000145;Parent=EPrPRAT00000000145;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_713 1 8858 scaffold_713 . biological_region 523 524 0.999 + . logic_name=eponine scaffold_713 . repeat_region 909 6970 . ? . description=dust scaffold_713 . biological_region 8608 8611 0.999 - . logic_name=eponine scaffold_713 ensembl protein_coding_gene 7304 8814 . - . ID=Phyra86442;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_713000001;logic_name=jgi_phyra1 scaffold_713 ensembl transcript 7304 8814 . - . ID=Phyra86442;Parent=Phyra86442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_713 . CDS 7304 7316 . - 0 ID=Phyra86442;Parent=Phyra86442;rank=5 scaffold_713 . exon 7304 7316 . - . ID=Phyra86442.5;Parent=Phyra86442;constitutive=1;ensembl_phase=2;rank=5 scaffold_713 . CDS 7351 7457 . - 0 ID=Phyra86442;Parent=Phyra86442;rank=4 scaffold_713 . exon 7351 7457 . - . ID=Phyra86442.4;Parent=Phyra86442;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_713 . CDS 7523 7711 . - 0 ID=Phyra86442;Parent=Phyra86442;rank=3 scaffold_713 . exon 7523 7711 . - . ID=Phyra86442.3;Parent=Phyra86442;constitutive=1;rank=3 scaffold_713 . CDS 7793 7796 . - 0 ID=Phyra86442;Parent=Phyra86442;rank=2 scaffold_713 . exon 7793 7796 . - . ID=Phyra86442.2;Parent=Phyra86442;constitutive=1;ensembl_phase=2;rank=2 scaffold_713 . CDS 7820 8814 . - 0 ID=Phyra86442;Parent=Phyra86442;rank=1 scaffold_713 . exon 7820 8814 . - . ID=Phyra86442.1;Parent=Phyra86442;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_712 1 8859 scaffold_712 . repeat_region 657 722 . ? . description=trf scaffold_712 . repeat_region 1868 7418 . ? . description=dust scaffold_712 . repeat_region 7608 7627 . ? . description=trf scaffold_712 ensembl protein_coding_gene 372 902 . - . ID=Phyra86441;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_712000001;logic_name=jgi_phyra1 scaffold_712 ensembl transcript 372 902 . - . ID=Phyra86441;Parent=Phyra86441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_712 . CDS 372 902 . - 0 ID=Phyra86441;Parent=Phyra86441;rank=1 scaffold_712 . exon 372 902 . - . ID=Phyra86441.1;Parent=Phyra86441;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_724 1 8862 scaffold_724 . repeat_region 19 662 . + . description=GypsyPi-1c_I-int scaffold_724 . repeat_region 2028 6470 . ? . description=dust scaffold_724 . repeat_region 6778 7717 . - . description=GypsyPi-1c_I-int scaffold_724 . repeat_region 8014 8063 . ? . description=dust scaffold_724 ensembl protein_coding_gene 149 475 . + . ID=Phyra52753;biotype=protein_coding;external_name=gwEuk.724.1.1;logic_name=jgi_phyra1 scaffold_724 ensembl transcript 149 475 . + . ID=Phyra52753;Parent=Phyra52753;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_724 . CDS 149 475 . + 0 ID=Phyra52753;Parent=Phyra52753;rank=1 scaffold_724 . exon 149 475 . + . ID=Phyra52753.1;Parent=Phyra52753;constitutive=1;rank=1 scaffold_724 ensembl protein_coding_gene 8069 8849 . + . ID=Phyra86456;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_724000001;logic_name=jgi_phyra1 scaffold_724 ensembl transcript 8069 8849 . + . ID=Phyra86456;Parent=Phyra86456;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_724 . CDS 8069 8849 . + 0 ID=Phyra86456;Parent=Phyra86456;rank=1 scaffold_724 . exon 8069 8849 . + . ID=Phyra86456.1;Parent=Phyra86456;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_709 1 8865 scaffold_709 . repeat_region 1003 6918 . ? . description=dust scaffold_709 ensembl protein_coding_gene 7071 8730 . + . ID=Phyra86439;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_709000001;logic_name=jgi_phyra1 scaffold_709 ensembl transcript 7071 8730 . + . ID=Phyra86439;Parent=Phyra86439;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_709 . CDS 7071 7210 . + 0 ID=Phyra86439;Parent=Phyra86439;rank=1 scaffold_709 . exon 7071 7210 . + . ID=Phyra86439.1;Parent=Phyra86439;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_709 . CDS 7466 7854 . + 0 ID=Phyra86439;Parent=Phyra86439;rank=2 scaffold_709 . exon 7466 7854 . + . ID=Phyra86439.2;Parent=Phyra86439;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_709 . CDS 7935 8730 . + 0 ID=Phyra86439;Parent=Phyra86439;rank=3 scaffold_709 . exon 7935 8730 . + . ID=Phyra86439.3;Parent=Phyra86439;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_710 1 8865 scaffold_710 . repeat_region 1615 7104 . ? . description=dust scaffold_710 ensembl protein_coding_gene 7865 8668 . - . ID=Phyra86440;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_710000001;logic_name=jgi_phyra1 scaffold_710 ensembl transcript 7865 8668 . - . ID=Phyra86440;Parent=Phyra86440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_710 . CDS 7865 8668 . - 0 ID=Phyra86440;Parent=Phyra86440;rank=1 scaffold_710 . exon 7865 8668 . - . ID=Phyra86440.1;Parent=Phyra86440;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_723 1 8865 scaffold_723 . biological_region 1705 1708 0.999 + . logic_name=eponine scaffold_723 . repeat_region 1877 2461 . ? . description=dust scaffold_723 . repeat_region 3987 4036 . ? . description=dust scaffold_723 . biological_region 5289 5294 0.999 + . logic_name=eponine scaffold_723 . repeat_region 5852 6063 . ? . description=dust scaffold_723 . biological_region 6139 6140 0.999 - . logic_name=eponine scaffold_723 . repeat_region 7555 7585 . ? . description=trf scaffold_723 . repeat_region 8047 8216 . ? . description=trf scaffold_723 . biological_region 8051 8054 0.999 + . logic_name=eponine scaffold_723 ensembl protein_coding_gene 174 788 . - . ID=Phyra86452;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_723000001;logic_name=jgi_phyra1 scaffold_723 ensembl transcript 174 788 . - . ID=Phyra86452;Parent=Phyra86452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_723 . CDS 174 788 . - 0 ID=Phyra86452;Parent=Phyra86452;rank=1 scaffold_723 . exon 174 788 . - . ID=Phyra86452.1;Parent=Phyra86452;constitutive=1;rank=1 scaffold_723 ensembl protein_coding_gene 1552 3728 . - . ID=Phyra86453;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_723000002;logic_name=jgi_phyra1 scaffold_723 ensembl transcript 1552 3728 . - . ID=Phyra86453;Parent=Phyra86453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_723 . CDS 1552 1844 . - 0 ID=Phyra86453;Parent=Phyra86453;rank=2 scaffold_723 . exon 1552 1844 . - . ID=Phyra86453.2;Parent=Phyra86453;constitutive=1;ensembl_phase=1;rank=2 scaffold_723 . CDS 2675 3728 . - 0 ID=Phyra86453;Parent=Phyra86453;rank=1 scaffold_723 . exon 2675 3728 . - . ID=Phyra86453.1;Parent=Phyra86453;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_723 ensembl protein_coding_gene 5214 6355 . + . ID=Phyra86454;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_723000003;logic_name=jgi_phyra1 scaffold_723 ensembl transcript 5214 6355 . + . ID=Phyra86454;Parent=Phyra86454;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_723 . CDS 5214 5376 . + 0 ID=Phyra86454;Parent=Phyra86454;rank=1 scaffold_723 . exon 5214 5376 . + . ID=Phyra86454.1;Parent=Phyra86454;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_723 . CDS 5480 5804 . + 0 ID=Phyra86454;Parent=Phyra86454;rank=2 scaffold_723 . exon 5480 5804 . + . ID=Phyra86454.2;Parent=Phyra86454;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_723 . CDS 6334 6355 . + 0 ID=Phyra86454;Parent=Phyra86454;rank=3 scaffold_723 . exon 6334 6355 . + . ID=Phyra86454.3;Parent=Phyra86454;constitutive=1;ensembl_phase=2;rank=3 scaffold_723 ensembl protein_coding_gene 7011 8426 . + . ID=Phyra86455;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_723000004;logic_name=jgi_phyra1 scaffold_723 ensembl transcript 7011 8426 . + . ID=Phyra86455;Parent=Phyra86455;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_723 . CDS 7011 8426 . + 0 ID=Phyra86455;Parent=Phyra86455;rank=1 scaffold_723 . exon 7011 8426 . + . ID=Phyra86455.1;Parent=Phyra86455;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_708 1 8870 scaffold_708 . repeat_region 2260 7936 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_720 1 8874 scaffold_720 . repeat_region 1570 6838 . ? . description=dust scaffold_720 . repeat_region 7705 7754 . ? . description=dust scaffold_720 . repeat_region 7758 7938 . + . description=Gypsy-2-I_PI-int ##gff-version 3 ##sequence-region scaffold_707 1 8877 scaffold_707 . repeat_region 1 64 . ? . description=dust scaffold_707 . biological_region 1031 1033 0.999 + . logic_name=eponine scaffold_707 . repeat_region 1977 2008 . ? . description=trf scaffold_707 . repeat_region 2547 7686 . ? . description=dust scaffold_707 ensembl protein_coding_gene 521 1864 . - . ID=Phyra86437;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_707000001;logic_name=jgi_phyra1 scaffold_707 ensembl transcript 521 1864 . - . ID=Phyra86437;Parent=Phyra86437;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_707 . CDS 521 1864 . - 0 ID=Phyra86437;Parent=Phyra86437;rank=1 scaffold_707 . exon 521 1864 . - . ID=Phyra86437.1;Parent=Phyra86437;constitutive=1;rank=1 scaffold_707 ensembl protein_coding_gene 8340 8825 . - . ID=Phyra86438;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_707000002;logic_name=jgi_phyra1 scaffold_707 ensembl transcript 8340 8825 . - . ID=Phyra86438;Parent=Phyra86438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_707 . CDS 8340 8825 . - 0 ID=Phyra86438;Parent=Phyra86438;rank=1 scaffold_707 . exon 8340 8825 . - . ID=Phyra86438.1;Parent=Phyra86438;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_717 1 8885 scaffold_717 . repeat_region 1354 1403 . ? . description=dust scaffold_717 . repeat_region 2281 3472 . ? . description=dust scaffold_717 . repeat_region 4809 4833 . ? . description=trf scaffold_717 . repeat_region 4890 5856 . ? . description=dust scaffold_717 . repeat_region 6936 6974 . ? . description=trf scaffold_717 . repeat_region 6936 6978 . ? . description=trf scaffold_717 . repeat_region 6936 6978 . ? . description=trf scaffold_717 . repeat_region 6936 6978 . ? . description=dust scaffold_717 . repeat_region 6940 6978 . ? . description=trf scaffold_717 . biological_region 7736 7739 0.999 + . logic_name=eponine scaffold_717 . biological_region 8162 8164 0.999 + . logic_name=eponine scaffold_717 . repeat_region 8173 8358 . ? . description=trf scaffold_717 ensembl protein_coding_gene 7771 8637 . + . ID=Phyra86448;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_717000001;logic_name=jgi_phyra1 scaffold_717 ensembl transcript 7771 8637 . + . ID=Phyra86448;Parent=Phyra86448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_717 . CDS 7771 8637 . + 0 ID=Phyra86448;Parent=Phyra86448;rank=1 scaffold_717 . exon 7771 8637 . + . ID=Phyra86448.1;Parent=Phyra86448;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_704 1 8889 scaffold_704 . biological_region 119 120 0.999 - . logic_name=eponine scaffold_704 . biological_region 171 176 0.999 - . logic_name=eponine scaffold_704 . biological_region 210 212 0.999 + . logic_name=eponine scaffold_704 . biological_region 248 249 0.999 + . logic_name=eponine scaffold_704 . biological_region 273 278 0.999 - . logic_name=eponine scaffold_704 . biological_region 325 329 0.999 - . logic_name=eponine scaffold_704 . biological_region 1839 1843 0.999 - . logic_name=eponine scaffold_704 . repeat_region 1968 6970 . ? . description=dust scaffold_704 . repeat_region 7170 7178 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_703 1 8906 scaffold_703 . repeat_region 450 572 . ? . description=trf scaffold_703 . repeat_region 450 572 . ? . description=dust scaffold_703 . repeat_region 450 572 . + . description=(CA)n scaffold_703 . repeat_region 891 898 . ? . description=dust scaffold_703 . repeat_region 2235 7966 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_699 1 8909 scaffold_699 . repeat_region 1810 7955 . ? . description=dust scaffold_699 . biological_region 8050 8054 0.999 - . logic_name=eponine scaffold_699 . biological_region 8145 8145 0.999 + . logic_name=eponine scaffold_699 . biological_region 8235 8238 0.999 - . logic_name=eponine scaffold_699 ensembl protein_coding_gene 440 1340 . + . ID=Phyra86430;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_699000001;logic_name=jgi_phyra1 scaffold_699 ensembl transcript 440 1340 . + . ID=Phyra86430;Parent=Phyra86430;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_699 . CDS 440 907 . + 0 ID=Phyra86430;Parent=Phyra86430;rank=1 scaffold_699 . exon 440 907 . + . ID=Phyra86430.1;Parent=Phyra86430;constitutive=1;rank=1 scaffold_699 . CDS 1119 1340 . + 0 ID=Phyra86430;Parent=Phyra86430;rank=2 scaffold_699 . exon 1119 1340 . + . ID=Phyra86430.2;Parent=Phyra86430;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_701 1 8909 scaffold_701 . repeat_region 1 966 . + . description=GypsyPi-1c_I-int scaffold_701 . repeat_region 971 3474 . ? . description=dust scaffold_701 . repeat_region 4601 4662 . ? . description=trf scaffold_701 . biological_region 8547 8548 0.999 - . logic_name=eponine scaffold_701 . biological_region 8640 8640 0.999 + . logic_name=eponine scaffold_701 . biological_region 8730 8733 0.999 - . logic_name=eponine scaffold_701 ensembl pseudogenic_tRNA 6933 7005 . + . ID=EPrPRAG00000000137;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_701 ensembl transcript 6933 7005 . + . ID=EPrPRAT00000000137;Parent=EPrPRAG00000000137;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_701 . exon 6933 7005 . + . ID=EPrPRAE00000000137;Parent=EPrPRAT00000000137;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_701 ensembl protein_coding_gene 837 965 . + . ID=Phyra52601;biotype=protein_coding;external_name=gwEuk.701.1.1;logic_name=jgi_phyra1 scaffold_701 ensembl transcript 837 965 . + . ID=Phyra52601;Parent=Phyra52601;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_701 . CDS 837 965 . + 0 ID=Phyra52601;Parent=Phyra52601;rank=1 scaffold_701 . exon 837 965 . + . ID=Phyra52601.1;Parent=Phyra52601;constitutive=1;rank=1 scaffold_701 ensembl protein_coding_gene 8070 8788 . + . ID=Phyra86432;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_701000001;logic_name=jgi_phyra1 scaffold_701 ensembl transcript 8070 8788 . + . ID=Phyra86432;Parent=Phyra86432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_701 . CDS 8070 8788 . + 0 ID=Phyra86432;Parent=Phyra86432;rank=1 scaffold_701 . exon 8070 8788 . + . ID=Phyra86432.1;Parent=Phyra86432;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_702 1 8912 scaffold_702 . biological_region 97 98 0.999 + . logic_name=eponine scaffold_702 . biological_region 241 243 0.999 + . logic_name=eponine scaffold_702 . repeat_region 1414 7488 . ? . description=dust scaffold_702 . biological_region 7755 7757 0.999 - . logic_name=eponine scaffold_702 . biological_region 7847 7852 0.999 - . logic_name=eponine scaffold_702 . biological_region 7849 7849 0.999 + . logic_name=eponine scaffold_702 . biological_region 7902 7906 0.999 + . logic_name=eponine scaffold_702 . biological_region 7939 7942 0.999 - . logic_name=eponine scaffold_702 . repeat_region 8595 8610 . ? . description=dust scaffold_702 . biological_region 8788 8789 0.999 + . logic_name=eponine scaffold_702 ensembl protein_coding_gene 139 1092 . + . ID=Phyra86433;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_702000001;logic_name=jgi_phyra1 scaffold_702 ensembl transcript 139 1092 . + . ID=Phyra86433;Parent=Phyra86433;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_702 . CDS 139 1092 . + 0 ID=Phyra86433;Parent=Phyra86433;rank=1 scaffold_702 . exon 139 1092 . + . ID=Phyra86433.1;Parent=Phyra86433;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_742 1 8924 scaffold_742 . repeat_region 755 817 . ? . description=dust scaffold_742 . repeat_region 1408 7272 . ? . description=dust scaffold_742 . repeat_region 7323 7526 . ? . description=trf scaffold_742 ensembl protein_coding_gene 250 1153 . + . ID=Phyra86478;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_742000001;logic_name=jgi_phyra1 scaffold_742 ensembl transcript 250 1153 . + . ID=Phyra86478;Parent=Phyra86478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_742 . CDS 250 728 . + 0 ID=Phyra86478;Parent=Phyra86478;rank=1 scaffold_742 . exon 250 728 . + . ID=Phyra86478.1;Parent=Phyra86478;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_742 . CDS 1129 1153 . + 0 ID=Phyra86478;Parent=Phyra86478;rank=2 scaffold_742 . exon 1129 1153 . + . ID=Phyra86478.2;Parent=Phyra86478;constitutive=1;ensembl_phase=2;rank=2 scaffold_742 ensembl protein_coding_gene 7452 8138 . + . ID=Phyra86479;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_742000002;logic_name=jgi_phyra1 scaffold_742 ensembl transcript 7452 8138 . + . ID=Phyra86479;Parent=Phyra86479;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_742 . CDS 7452 8138 . + 0 ID=Phyra86479;Parent=Phyra86479;rank=1 scaffold_742 . exon 7452 8138 . + . ID=Phyra86479.1;Parent=Phyra86479;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_697 1 8929 scaffold_697 . repeat_region 2131 5280 . ? . description=dust scaffold_697 . repeat_region 6541 7744 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_695 1 8940 scaffold_695 . repeat_region 892 949 . ? . description=trf scaffold_695 . biological_region 1408 1411 0.999 + . logic_name=eponine scaffold_695 . repeat_region 2362 7518 . ? . description=dust scaffold_695 . repeat_region 8441 8536 . ? . description=trf scaffold_695 . repeat_region 8441 8554 . ? . description=trf scaffold_695 . repeat_region 8927 8940 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_696 1 8940 scaffold_696 . repeat_region 1671 2638 . ? . description=dust scaffold_696 . repeat_region 3667 6953 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_694 1 8942 scaffold_694 . repeat_region 2153 8087 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_772 1 8959 scaffold_772 . repeat_region 1229 2400 . ? . description=dust scaffold_772 . repeat_region 3458 7697 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_692 1 8965 scaffold_692 . repeat_region 1498 6978 . ? . description=dust scaffold_692 ensembl protein_coding_gene 1370 8477 . - . ID=Phyra86424;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_692000001;logic_name=jgi_phyra1 scaffold_692 ensembl transcript 1370 8477 . - . ID=Phyra86424;Parent=Phyra86424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_692 . CDS 1370 1420 . - 0 ID=Phyra86424;Parent=Phyra86424;rank=5 scaffold_692 . exon 1370 1420 . - . ID=Phyra86424.5;Parent=Phyra86424;constitutive=1;rank=5 scaffold_692 . CDS 6982 7043 . - 0 ID=Phyra86424;Parent=Phyra86424;rank=4 scaffold_692 . exon 6982 7043 . - . ID=Phyra86424.4;Parent=Phyra86424;constitutive=1;ensembl_phase=1;rank=4 scaffold_692 . CDS 7179 8107 . - 0 ID=Phyra86424;Parent=Phyra86424;rank=3 scaffold_692 . exon 7179 8107 . - . ID=Phyra86424.3;Parent=Phyra86424;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_692 . CDS 8181 8343 . - 0 ID=Phyra86424;Parent=Phyra86424;rank=2 scaffold_692 . exon 8181 8343 . - . ID=Phyra86424.2;Parent=Phyra86424;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_692 . CDS 8408 8477 . - 0 ID=Phyra86424;Parent=Phyra86424;rank=1 scaffold_692 . exon 8408 8477 . - . ID=Phyra86424.1;Parent=Phyra86424;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_716 1 8970 scaffold_716 . repeat_region 1961 5649 . ? . description=dust scaffold_716 . repeat_region 6788 7927 . ? . description=dust scaffold_716 . repeat_region 8044 8070 . ? . description=trf scaffold_716 . biological_region 8317 8321 0.999 + . logic_name=eponine scaffold_716 . repeat_region 8417 8434 . ? . description=dust scaffold_716 ensembl protein_coding_gene 955 1704 . - . ID=Phyra72425;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_716000001;logic_name=jgi_phyra1 scaffold_716 ensembl transcript 955 1704 . - . ID=Phyra72425;Parent=Phyra72425;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_716 . CDS 955 1704 . - 0 ID=Phyra72425;Parent=Phyra72425;rank=1 scaffold_716 . exon 955 1704 . - . ID=Phyra72425.1;Parent=Phyra72425;constitutive=1;rank=1 scaffold_716 ensembl protein_coding_gene 5808 6707 . - . ID=Phyra72426;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_716000002;logic_name=jgi_phyra1 scaffold_716 ensembl transcript 5808 6707 . - . ID=Phyra72426;Parent=Phyra72426;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_716 . CDS 5808 6707 . - 0 ID=Phyra72426;Parent=Phyra72426;rank=1 scaffold_716 . exon 5808 6707 . - . ID=Phyra72426.1;Parent=Phyra72426;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_698 1 8977 scaffold_698 . biological_region 173 179 0.999 - . logic_name=eponine scaffold_698 . repeat_region 1756 1766 . ? . description=dust scaffold_698 . biological_region 1803 1803 0.999 - . logic_name=eponine scaffold_698 . repeat_region 1804 1817 . ? . description=dust scaffold_698 . repeat_region 1862 2128 . ? . description=dust scaffold_698 . repeat_region 3800 3849 . ? . description=dust scaffold_698 . repeat_region 5000 7139 . ? . description=dust scaffold_698 ensembl protein_coding_gene 49 648 . + . ID=Phyra86429;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_698000001;logic_name=jgi_phyra1 scaffold_698 ensembl transcript 49 648 . + . ID=Phyra86429;Parent=Phyra86429;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_698 . CDS 49 648 . + 0 ID=Phyra86429;Parent=Phyra86429;rank=1 scaffold_698 . exon 49 648 . + . ID=Phyra86429.1;Parent=Phyra86429;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_691 1 8987 scaffold_691 . repeat_region 1 3065 . - . description=GypsyPi-1c_I-int scaffold_691 . biological_region 289 290 0.999 + . logic_name=eponine scaffold_691 . biological_region 2536 2538 0.999 - . logic_name=eponine scaffold_691 . repeat_region 3067 3243 . ? . description=dust scaffold_691 . repeat_region 3246 4466 . - . description=GypsyPi-1c_I-int scaffold_691 . biological_region 3651 3652 0.999 - . logic_name=eponine scaffold_691 . biological_region 3706 3709 0.999 + . logic_name=eponine scaffold_691 . repeat_region 4838 5195 . - . description=GypsyPi-1c_I-int scaffold_691 . repeat_region 5197 7965 . ? . description=dust scaffold_691 ensembl protein_coding_gene 65 1176 . + . ID=Phyra86422;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_691000001;logic_name=jgi_phyra1 scaffold_691 ensembl transcript 65 1176 . + . ID=Phyra86422;Parent=Phyra86422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_691 . exon 65 1176 . + . ID=Phyra86422.1;Parent=Phyra86422;constitutive=1;ensembl_phase=-1;rank=1 scaffold_691 . CDS 67 1176 . + 0 ID=Phyra86422;Parent=Phyra86422;rank=1 scaffold_691 ensembl protein_coding_gene 1445 8983 . - . ID=Phyra86423;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_691000002;logic_name=jgi_phyra1 scaffold_691 ensembl transcript 1445 8983 . - . ID=Phyra86423;Parent=Phyra86423;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_691 . CDS 1445 1480 . - 0 ID=Phyra86423;Parent=Phyra86423;rank=7 scaffold_691 . exon 1445 1480 . - . ID=Phyra86423.7;Parent=Phyra86423;constitutive=1;rank=7 scaffold_691 . CDS 1520 2599 . - 0 ID=Phyra86423;Parent=Phyra86423;rank=6 scaffold_691 . exon 1520 2599 . - . ID=Phyra86423.6;Parent=Phyra86423;constitutive=1;rank=6 scaffold_691 . CDS 2709 3020 . - 0 ID=Phyra86423;Parent=Phyra86423;rank=5 scaffold_691 . exon 2709 3020 . - . ID=Phyra86423.5;Parent=Phyra86423;constitutive=1;rank=5 scaffold_691 . CDS 3275 4175 . - 0 ID=Phyra86423;Parent=Phyra86423;rank=4 scaffold_691 . exon 3275 4175 . - . ID=Phyra86423.4;Parent=Phyra86423;constitutive=1;ensembl_phase=2;rank=4 scaffold_691 . CDS 4225 5068 . - 0 ID=Phyra86423;Parent=Phyra86423;rank=3 scaffold_691 . exon 4225 5068 . - . ID=Phyra86423.3;Parent=Phyra86423;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_691 . CDS 8086 8229 . - 0 ID=Phyra86423;Parent=Phyra86423;rank=2 scaffold_691 . exon 8086 8229 . - . ID=Phyra86423.2;Parent=Phyra86423;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_691 . CDS 8251 8983 . - 0 ID=Phyra86423;Parent=Phyra86423;rank=1 scaffold_691 . exon 8251 8983 . - . ID=Phyra86423.1;Parent=Phyra86423;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_690 1 8995 scaffold_690 . repeat_region 2025 7136 . ? . description=dust scaffold_690 . repeat_region 8497 8530 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_689 1 9000 scaffold_689 . biological_region 1848 1850 0.999 - . logic_name=eponine scaffold_689 . repeat_region 2179 7318 . ? . description=dust scaffold_689 . repeat_region 8702 8772 . ? . description=trf scaffold_689 . repeat_region 8716 8783 . ? . description=dust scaffold_689 . repeat_region 8736 8779 . ? . description=trf scaffold_689 . repeat_region 8738 8779 . ? . description=trf scaffold_689 . repeat_region 8811 8872 . ? . description=trf scaffold_689 . repeat_region 8814 8934 . ? . description=dust scaffold_689 . repeat_region 8828 8878 . ? . description=trf scaffold_689 . repeat_region 8840 8946 . ? . description=trf scaffold_689 . repeat_region 8846 8946 . ? . description=trf scaffold_689 . repeat_region 8864 8946 . ? . description=trf scaffold_689 ensembl protein_coding_gene 977 2055 . + . ID=Phyra86419;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_689000001;logic_name=jgi_phyra1 scaffold_689 ensembl transcript 977 2055 . + . ID=Phyra86419;Parent=Phyra86419;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_689 . CDS 977 1168 . + 0 ID=Phyra86419;Parent=Phyra86419;rank=1 scaffold_689 . exon 977 1168 . + . ID=Phyra86419.1;Parent=Phyra86419;constitutive=1;rank=1 scaffold_689 . CDS 1249 2055 . + 0 ID=Phyra86419;Parent=Phyra86419;rank=2 scaffold_689 . exon 1249 2055 . + . ID=Phyra86419.2;Parent=Phyra86419;constitutive=1;rank=2 scaffold_689 ensembl protein_coding_gene 7608 8162 . + . ID=Phyra86420;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_689000002;logic_name=jgi_phyra1 scaffold_689 ensembl transcript 7608 8162 . + . ID=Phyra86420;Parent=Phyra86420;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_689 . CDS 7608 8162 . + 0 ID=Phyra86420;Parent=Phyra86420;rank=1 scaffold_689 . exon 7608 8162 . + . ID=Phyra86420.1;Parent=Phyra86420;constitutive=1;rank=1 scaffold_689 ensembl protein_coding_gene 8630 8984 . + . ID=Phyra86421;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_689000003;logic_name=jgi_phyra1 scaffold_689 ensembl transcript 8630 8984 . + . ID=Phyra86421;Parent=Phyra86421;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_689 . CDS 8630 8984 . + 0 ID=Phyra86421;Parent=Phyra86421;rank=1 scaffold_689 . exon 8630 8984 . + . ID=Phyra86421.1;Parent=Phyra86421;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_722 1 9001 scaffold_722 . biological_region 47 51 0.999 + . logic_name=eponine scaffold_722 . biological_region 140 144 0.999 + . logic_name=eponine scaffold_722 . biological_region 194 195 0.999 - . logic_name=eponine scaffold_722 . biological_region 433 438 0.999 + . logic_name=eponine scaffold_722 . biological_region 530 533 0.999 - . logic_name=eponine scaffold_722 . biological_region 687 690 0.999 - . logic_name=eponine scaffold_722 . repeat_region 2236 7461 . ? . description=dust scaffold_722 . repeat_region 7486 7505 . ? . description=trf scaffold_722 . biological_region 8149 8152 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_688 1 9003 scaffold_688 . repeat_region 1425 7070 . ? . description=dust scaffold_688 . biological_region 8716 8716 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_700 1 9008 scaffold_700 . repeat_region 1483 6622 . ? . description=dust scaffold_700 ensembl protein_coding_gene 7136 8828 . - . ID=Phyra86431;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_700000001;logic_name=jgi_phyra1 scaffold_700 ensembl transcript 7136 8828 . - . ID=Phyra86431;Parent=Phyra86431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_700 . CDS 7136 7177 . - 0 ID=Phyra86431;Parent=Phyra86431;rank=2 scaffold_700 . exon 7136 7177 . - . ID=Phyra86431.2;Parent=Phyra86431;constitutive=1;rank=2 scaffold_700 . CDS 7317 8828 . - 0 ID=Phyra86431;Parent=Phyra86431;rank=1 scaffold_700 . exon 7317 8828 . - . ID=Phyra86431.1;Parent=Phyra86431;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_693 1 9012 scaffold_693 . biological_region 335 337 0.999 + . logic_name=eponine scaffold_693 . biological_region 360 373 0.999 - . logic_name=eponine scaffold_693 . biological_region 419 421 0.999 + . logic_name=eponine scaffold_693 . biological_region 1296 1300 0.999 + . logic_name=eponine scaffold_693 . biological_region 1304 1308 0.999 - . logic_name=eponine scaffold_693 . repeat_region 2176 2237 . ? . description=trf scaffold_693 . biological_region 2841 2842 0.999 + . logic_name=eponine scaffold_693 . repeat_region 4026 4075 . ? . description=dust scaffold_693 . repeat_region 4416 4461 . ? . description=dust scaffold_693 . repeat_region 6300 6349 . ? . description=dust scaffold_693 . biological_region 7297 7301 0.999 + . logic_name=eponine scaffold_693 . biological_region 7327 7329 0.999 + . logic_name=eponine scaffold_693 . biological_region 7810 7810 0.999 - . logic_name=eponine scaffold_693 . biological_region 7862 7869 0.999 + . logic_name=eponine scaffold_693 . biological_region 8024 8026 0.999 - . logic_name=eponine scaffold_693 . biological_region 8255 8263 0.999 - . logic_name=eponine scaffold_693 ensembl protein_coding_gene 143 955 . + . ID=Phyra86425;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_693000001;logic_name=jgi_phyra1 scaffold_693 ensembl transcript 143 955 . + . ID=Phyra86425;Parent=Phyra86425;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_693 . CDS 143 955 . + 0 ID=Phyra86425;Parent=Phyra86425;rank=1 scaffold_693 . exon 143 955 . + . ID=Phyra86425.1;Parent=Phyra86425;constitutive=1;rank=1 scaffold_693 ensembl protein_coding_gene 1198 1644 . + . ID=Phyra86426;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_693000002;logic_name=jgi_phyra1 scaffold_693 ensembl transcript 1198 1644 . + . ID=Phyra86426;Parent=Phyra86426;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_693 . CDS 1198 1644 . + 0 ID=Phyra86426;Parent=Phyra86426;rank=1 scaffold_693 . exon 1198 1644 . + . ID=Phyra86426.1;Parent=Phyra86426;constitutive=1;rank=1 scaffold_693 ensembl protein_coding_gene 6118 7430 . - . ID=Phyra86428;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_693000004;logic_name=jgi_phyra1 scaffold_693 ensembl transcript 6118 7430 . - . ID=Phyra86428;Parent=Phyra86428;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_693 . CDS 6118 6182 . - 0 ID=Phyra86428;Parent=Phyra86428;rank=5 scaffold_693 . exon 6118 6182 . - . ID=Phyra86428.5;Parent=Phyra86428;constitutive=1;ensembl_phase=1;rank=5 scaffold_693 . CDS 6353 6842 . - 0 ID=Phyra86428;Parent=Phyra86428;rank=4 scaffold_693 . exon 6353 6842 . - . ID=Phyra86428.4;Parent=Phyra86428;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_693 . CDS 6885 6905 . - 0 ID=Phyra86428;Parent=Phyra86428;rank=3 scaffold_693 . exon 6885 6905 . - . ID=Phyra86428.3;Parent=Phyra86428;constitutive=1;rank=3 scaffold_693 . CDS 6992 7162 . - 0 ID=Phyra86428;Parent=Phyra86428;rank=2 scaffold_693 . exon 6992 7162 . - . ID=Phyra86428.2;Parent=Phyra86428;constitutive=1;rank=2 scaffold_693 . CDS 7236 7430 . - 0 ID=Phyra86428;Parent=Phyra86428;rank=1 scaffold_693 . exon 7236 7430 . - . ID=Phyra86428.1;Parent=Phyra86428;constitutive=1;rank=1 scaffold_693 ensembl protein_coding_gene 1855 2866 . + . ID=Phyra97190;biotype=protein_coding;external_name=C_scaffold_693000001;logic_name=jgi_phyra1 scaffold_693 ensembl transcript 1855 2866 . + . ID=Phyra97190;Parent=Phyra97190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_693 . CDS 1855 1939 . + 0 ID=Phyra97190;Parent=Phyra97190;rank=1 scaffold_693 . exon 1855 1939 . + . ID=Phyra97190.1;Parent=Phyra97190;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_693 . CDS 1961 2076 . + 0 ID=Phyra97190;Parent=Phyra97190;rank=2 scaffold_693 . exon 1961 2076 . + . ID=Phyra97190.2;Parent=Phyra97190;constitutive=1;ensembl_phase=1;rank=2 scaffold_693 . CDS 2147 2866 . + 0 ID=Phyra97190;Parent=Phyra97190;rank=3 scaffold_693 . exon 2147 2866 . + . ID=Phyra97190.3;Parent=Phyra97190;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_685 1 9015 scaffold_685 . repeat_region 818 862 . ? . description=trf scaffold_685 . repeat_region 1023 4653 . ? . description=dust scaffold_685 . repeat_region 5446 5601 . ? . description=trf scaffold_685 . repeat_region 5468 5514 . ? . description=trf scaffold_685 . repeat_region 8935 8943 . ? . description=dust scaffold_685 ensembl protein_coding_gene 56 372 . - . ID=Phyra86414;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_685000001;logic_name=jgi_phyra1 scaffold_685 ensembl transcript 56 372 . - . ID=Phyra86414;Parent=Phyra86414;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_685 . CDS 56 372 . - 0 ID=Phyra86414;Parent=Phyra86414;rank=1 scaffold_685 . exon 56 372 . - . ID=Phyra86414.1;Parent=Phyra86414;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_684 1 9020 scaffold_684 . repeat_region 1267 1274 . ? . description=dust scaffold_684 . repeat_region 1815 7210 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_680 1 9044 scaffold_680 . repeat_region 1908 6659 . ? . description=dust scaffold_680 . repeat_region 8343 8352 . ? . description=dust scaffold_680 ensembl protein_coding_gene 191 1270 . + . ID=Phyra86408;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_680000001;logic_name=jgi_phyra1 scaffold_680 ensembl transcript 191 1270 . + . ID=Phyra86408;Parent=Phyra86408;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_680 . CDS 191 1270 . + 0 ID=Phyra86408;Parent=Phyra86408;rank=1 scaffold_680 . exon 191 1270 . + . ID=Phyra86408.1;Parent=Phyra86408;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_679 1 9046 scaffold_679 . repeat_region 288 312 . ? . description=trf scaffold_679 . biological_region 811 815 0.999 + . logic_name=eponine scaffold_679 . biological_region 904 907 0.999 + . logic_name=eponine scaffold_679 . biological_region 931 936 0.999 - . logic_name=eponine scaffold_679 . repeat_region 3923 7445 . ? . description=dust scaffold_679 ensembl protein_coding_gene 41 620 . - . ID=Phyra86405;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_679000001;logic_name=jgi_phyra1 scaffold_679 ensembl transcript 41 620 . - . ID=Phyra86405;Parent=Phyra86405;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_679 . CDS 41 620 . - 0 ID=Phyra86405;Parent=Phyra86405;rank=1 scaffold_679 . exon 41 620 . - . ID=Phyra86405.1;Parent=Phyra86405;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_679 ensembl protein_coding_gene 964 3240 . + . ID=Phyra86406;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_679000002;logic_name=jgi_phyra1 scaffold_679 ensembl transcript 964 3240 . + . ID=Phyra86406;Parent=Phyra86406;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_679 . CDS 964 3240 . + 0 ID=Phyra86406;Parent=Phyra86406;rank=1 scaffold_679 . exon 964 3240 . + . ID=Phyra86406.1;Parent=Phyra86406;constitutive=1;rank=1 scaffold_679 ensembl protein_coding_gene 7845 8597 . + . ID=Phyra86407;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_679000003;logic_name=jgi_phyra1 scaffold_679 ensembl transcript 7845 8597 . + . ID=Phyra86407;Parent=Phyra86407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_679 . CDS 7845 8597 . + 0 ID=Phyra86407;Parent=Phyra86407;rank=1 scaffold_679 . exon 7845 8597 . + . ID=Phyra86407.1;Parent=Phyra86407;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_681 1 9047 scaffold_681 . repeat_region 2202 5084 . ? . description=dust scaffold_681 . repeat_region 5246 5255 . ? . description=dust scaffold_681 . repeat_region 6069 7639 . ? . description=dust scaffold_681 . repeat_region 7642 9046 . + . description=Polinton-1_PI scaffold_681 ensembl protein_coding_gene 393 1706 . - . ID=Phyra86409;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_681000001;logic_name=jgi_phyra1 scaffold_681 ensembl transcript 393 1706 . - . ID=Phyra86409;Parent=Phyra86409;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_681 . CDS 393 1706 . - 0 ID=Phyra86409;Parent=Phyra86409;rank=1 scaffold_681 . exon 393 1706 . - . ID=Phyra86409.1;Parent=Phyra86409;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_678 1 9050 scaffold_678 . repeat_region 1495 7763 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_748 1 9056 scaffold_748 . repeat_region 625 667 . ? . description=trf scaffold_748 . repeat_region 1083 7209 . ? . description=dust scaffold_748 . repeat_region 7666 7708 . ? . description=trf scaffold_748 ensembl protein_coding_gene 71 463 . - . ID=Phyra86486;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_748000001;logic_name=jgi_phyra1 scaffold_748 ensembl transcript 71 463 . - . ID=Phyra86486;Parent=Phyra86486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_748 . CDS 71 463 . - 0 ID=Phyra86486;Parent=Phyra86486;rank=1 scaffold_748 . exon 71 463 . - . ID=Phyra86486.1;Parent=Phyra86486;constitutive=1;rank=1 scaffold_748 ensembl protein_coding_gene 7720 9046 . + . ID=Phyra86487;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_748000002;logic_name=jgi_phyra1 scaffold_748 ensembl transcript 7720 9046 . + . ID=Phyra86487;Parent=Phyra86487;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_748 . CDS 7720 7744 . + 0 ID=Phyra86487;Parent=Phyra86487;rank=1 scaffold_748 . exon 7720 7744 . + . ID=Phyra86487.1;Parent=Phyra86487;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_748 . CDS 7776 9046 . + 0 ID=Phyra86487;Parent=Phyra86487;rank=2 scaffold_748 . exon 7776 9046 . + . ID=Phyra86487.2;Parent=Phyra86487;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_675 1 9058 scaffold_675 . biological_region 2086 2088 0.999 - . logic_name=eponine scaffold_675 . repeat_region 2317 7069 . ? . description=dust scaffold_675 ensembl protein_coding_gene 36 2203 . + . ID=Phyra86403;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_675000001;logic_name=jgi_phyra1 scaffold_675 ensembl transcript 36 2203 . + . ID=Phyra86403;Parent=Phyra86403;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_675 . CDS 36 2151 . + 0 ID=Phyra86403;Parent=Phyra86403;rank=1 scaffold_675 . exon 36 2151 . + . ID=Phyra86403.1;Parent=Phyra86403;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_675 . CDS 2181 2203 . + 0 ID=Phyra86403;Parent=Phyra86403;rank=2 scaffold_675 . exon 2181 2203 . + . ID=Phyra86403.2;Parent=Phyra86403;constitutive=1;ensembl_phase=1;rank=2 scaffold_675 ensembl protein_coding_gene 7502 8752 . + . ID=Phyra86404;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_675000002;logic_name=jgi_phyra1 scaffold_675 ensembl transcript 7502 8752 . + . ID=Phyra86404;Parent=Phyra86404;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_675 . CDS 7502 8752 . + 0 ID=Phyra86404;Parent=Phyra86404;rank=1 scaffold_675 . exon 7502 8752 . + . ID=Phyra86404.1;Parent=Phyra86404;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_676 1 9058 scaffold_676 . repeat_region 2122 7722 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_672 1 9068 scaffold_672 . biological_region 829 831 0.999 - . logic_name=eponine scaffold_672 . repeat_region 1710 1717 . ? . description=dust scaffold_672 . repeat_region 2032 5015 . ? . description=dust scaffold_672 . biological_region 5526 5528 0.999 + . logic_name=eponine scaffold_672 . biological_region 7406 7407 0.999 - . logic_name=eponine scaffold_672 . biological_region 7463 7465 0.999 + . logic_name=eponine scaffold_672 ensembl protein_coding_gene 6 1103 . - . ID=Phyra86401;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_672000001;logic_name=jgi_phyra1 scaffold_672 ensembl transcript 6 1103 . - . ID=Phyra86401;Parent=Phyra86401;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_672 . CDS 6 1103 . - 0 ID=Phyra86401;Parent=Phyra86401;rank=1 scaffold_672 . exon 6 1103 . - . ID=Phyra86401.1;Parent=Phyra86401;constitutive=1;rank=1 scaffold_672 ensembl protein_coding_gene 1774 8965 . - . ID=Phyra86402;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_672000002;logic_name=jgi_phyra1 scaffold_672 ensembl transcript 1774 8965 . - . ID=Phyra86402;Parent=Phyra86402;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_672 . CDS 1774 1785 . - 0 ID=Phyra86402;Parent=Phyra86402;rank=2 scaffold_672 . exon 1774 1785 . - . ID=Phyra86402.2;Parent=Phyra86402;constitutive=1;rank=2 scaffold_672 . CDS 5024 8965 . - 0 ID=Phyra86402;Parent=Phyra86402;rank=1 scaffold_672 . exon 5024 8965 . - . ID=Phyra86402.1;Parent=Phyra86402;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_670 1 9072 scaffold_670 . biological_region 1409 1414 0.999 + . logic_name=eponine scaffold_670 . biological_region 1453 1456 0.999 - . logic_name=eponine scaffold_670 . repeat_region 1797 1828 . ? . description=trf scaffold_670 . repeat_region 2397 7847 . ? . description=dust scaffold_670 . biological_region 8039 8043 0.999 - . logic_name=eponine scaffold_670 . biological_region 8642 8644 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_671 1 9072 scaffold_671 . biological_region 127 128 0.999 + . logic_name=eponine scaffold_671 . repeat_region 934 941 . ? . description=dust scaffold_671 . repeat_region 1862 1941 . ? . description=trf scaffold_671 . repeat_region 1894 2023 . ? . description=trf scaffold_671 . repeat_region 2205 2217 . ? . description=dust scaffold_671 . repeat_region 2547 3770 . ? . description=dust scaffold_671 . repeat_region 4733 5140 . ? . description=dust scaffold_671 . repeat_region 8104 8118 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_682 1 9080 scaffold_682 . repeat_region 572 579 . ? . description=dust scaffold_682 . biological_region 1791 1791 0.999 - . logic_name=eponine scaffold_682 . repeat_region 3719 7499 . ? . description=dust scaffold_682 . biological_region 8010 8014 0.999 + . logic_name=eponine scaffold_682 . repeat_region 8219 8251 . ? . description=trf scaffold_682 . biological_region 8636 8641 0.999 - . logic_name=eponine scaffold_682 . biological_region 8691 8697 0.999 + . logic_name=eponine scaffold_682 . biological_region 8730 8733 0.999 - . logic_name=eponine scaffold_682 ensembl protein_coding_gene 847 1836 . + . ID=Phyra72422;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_682000001;logic_name=jgi_phyra1 scaffold_682 ensembl transcript 847 1836 . + . ID=Phyra72422;Parent=Phyra72422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_682 . CDS 847 1836 . + 0 ID=Phyra72422;Parent=Phyra72422;rank=1 scaffold_682 . exon 847 1836 . + . ID=Phyra72422.1;Parent=Phyra72422;constitutive=1;rank=1 scaffold_682 ensembl protein_coding_gene 7747 8199 . - . ID=Phyra86411;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_682000002;logic_name=jgi_phyra1 scaffold_682 ensembl transcript 7747 8199 . - . ID=Phyra86411;Parent=Phyra86411;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_682 . CDS 7747 8199 . - 0 ID=Phyra86411;Parent=Phyra86411;rank=1 scaffold_682 . exon 7747 8199 . - . ID=Phyra86411.1;Parent=Phyra86411;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_669 1 9083 scaffold_669 . biological_region 222 222 0.999 - . logic_name=eponine scaffold_669 . biological_region 465 468 0.999 + . logic_name=eponine scaffold_669 . biological_region 481 481 0.999 + . logic_name=eponine scaffold_669 . repeat_region 1939 7340 . ? . description=dust scaffold_669 . biological_region 8408 8409 0.999 + . logic_name=eponine scaffold_669 . biological_region 8487 8487 0.999 + . logic_name=eponine scaffold_669 . biological_region 8565 8567 0.999 - . logic_name=eponine scaffold_669 ensembl protein_coding_gene 15 587 . - . ID=Phyra86400;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_669000001;logic_name=jgi_phyra1 scaffold_669 ensembl transcript 15 587 . - . ID=Phyra86400;Parent=Phyra86400;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_669 . CDS 15 587 . - 0 ID=Phyra86400;Parent=Phyra86400;rank=1 scaffold_669 . exon 15 587 . - . ID=Phyra86400.1;Parent=Phyra86400;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_683 1 9083 scaffold_683 . repeat_region 1310 1317 . ? . description=dust scaffold_683 . biological_region 1435 1439 0.999 + . logic_name=eponine scaffold_683 . biological_region 1453 1457 0.999 - . logic_name=eponine scaffold_683 . biological_region 1522 1525 0.999 - . logic_name=eponine scaffold_683 . repeat_region 2015 7011 . ? . description=dust scaffold_683 . repeat_region 7738 7787 . ? . description=dust scaffold_683 . biological_region 8363 8364 0.999 + . logic_name=eponine scaffold_683 ensembl protein_coding_gene 813 1241 . - . ID=Phyra72423;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_683000001;logic_name=jgi_phyra1 scaffold_683 ensembl transcript 813 1241 . - . ID=Phyra72423;Parent=Phyra72423;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_683 . CDS 813 1029 . - 0 ID=Phyra72423;Parent=Phyra72423;rank=2 scaffold_683 . exon 813 1029 . - . ID=Phyra72423.2;Parent=Phyra72423;constitutive=1;ensembl_phase=2;rank=2 scaffold_683 . CDS 1099 1241 . - 0 ID=Phyra72423;Parent=Phyra72423;rank=1 scaffold_683 . exon 1099 1241 . - . ID=Phyra72423.1;Parent=Phyra72423;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_683 ensembl protein_coding_gene 8044 8998 . + . ID=Phyra86413;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_683000002;logic_name=jgi_phyra1 scaffold_683 ensembl transcript 8044 8998 . + . ID=Phyra86413;Parent=Phyra86413;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_683 . CDS 8044 8068 . + 0 ID=Phyra86413;Parent=Phyra86413;rank=1 scaffold_683 . exon 8044 8068 . + . ID=Phyra86413.1;Parent=Phyra86413;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_683 . CDS 8244 8290 . + 0 ID=Phyra86413;Parent=Phyra86413;rank=2 scaffold_683 . exon 8244 8290 . + . ID=Phyra86413.2;Parent=Phyra86413;constitutive=1;ensembl_phase=1;rank=2 scaffold_683 . CDS 8360 8998 . + 0 ID=Phyra86413;Parent=Phyra86413;rank=3 scaffold_683 . exon 8360 8998 . + . ID=Phyra86413.3;Parent=Phyra86413;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_686 1 9093 scaffold_686 . repeat_region 1804 1881 . ? . description=dust scaffold_686 . biological_region 2686 2691 0.999 + . logic_name=eponine scaffold_686 . repeat_region 2800 2830 . ? . description=trf scaffold_686 . repeat_region 3235 6548 . ? . description=dust scaffold_686 ensembl protein_coding_gene 1538 3058 . - . ID=Phyra86415;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_686000001;logic_name=jgi_phyra1 scaffold_686 ensembl transcript 1538 3058 . - . ID=Phyra86415;Parent=Phyra86415;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_686 . CDS 1538 1633 . - 0 ID=Phyra86415;Parent=Phyra86415;rank=2 scaffold_686 . exon 1538 1633 . - . ID=Phyra86415.2;Parent=Phyra86415;constitutive=1;rank=2 scaffold_686 . CDS 1931 3058 . - 0 ID=Phyra86415;Parent=Phyra86415;rank=1 scaffold_686 . exon 1931 3058 . - . ID=Phyra86415.1;Parent=Phyra86415;constitutive=1;rank=1 scaffold_686 ensembl protein_coding_gene 7988 8986 . + . ID=Phyra86416;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_686000002;logic_name=jgi_phyra1 scaffold_686 ensembl transcript 7988 8986 . + . ID=Phyra86416;Parent=Phyra86416;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_686 . CDS 7988 8198 . + 0 ID=Phyra86416;Parent=Phyra86416;rank=1 scaffold_686 . exon 7988 8198 . + . ID=Phyra86416.1;Parent=Phyra86416;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_686 . CDS 8262 8986 . + 0 ID=Phyra86416;Parent=Phyra86416;rank=2 scaffold_686 . exon 8262 8986 . + . ID=Phyra86416.2;Parent=Phyra86416;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_677 1 9110 scaffold_677 . repeat_region 1565 1572 . ? . description=dust scaffold_677 . repeat_region 1920 1962 . ? . description=trf scaffold_677 . repeat_region 3496 6343 . ? . description=dust scaffold_677 . repeat_region 8212 8261 . ? . description=dust scaffold_677 . repeat_region 8666 8722 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_668 1 9111 scaffold_668 . repeat_region 2235 8046 . ? . description=dust scaffold_668 . repeat_region 8361 8378 . ? . description=dust scaffold_668 . repeat_region 8538 8593 . ? . description=dust scaffold_668 . repeat_region 8558 8593 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_733 1 9114 scaffold_733 . repeat_region 1681 2775 . ? . description=dust scaffold_733 . biological_region 5044 5049 0.999 - . logic_name=eponine scaffold_733 . biological_region 5089 5090 0.999 - . logic_name=eponine scaffold_733 . biological_region 5417 5422 0.999 - . logic_name=eponine scaffold_733 ensembl protein_coding_gene 3391 4554 . - . ID=Phyra86469;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_733000001;logic_name=jgi_phyra1 scaffold_733 ensembl transcript 3391 4554 . - . ID=Phyra86469;Parent=Phyra86469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_733 . CDS 3391 4554 . - 0 ID=Phyra86469;Parent=Phyra86469;rank=1 scaffold_733 . exon 3391 4554 . - . ID=Phyra86469.1;Parent=Phyra86469;constitutive=1;rank=1 scaffold_733 ensembl protein_coding_gene 5938 6891 . - . ID=Phyra86470;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_733000002;logic_name=jgi_phyra1 scaffold_733 ensembl transcript 5938 6891 . - . ID=Phyra86470;Parent=Phyra86470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_733 . CDS 5938 6891 . - 0 ID=Phyra86470;Parent=Phyra86470;rank=1 scaffold_733 . exon 5938 6891 . - . ID=Phyra86470.1;Parent=Phyra86470;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_674 1 9116 scaffold_674 . repeat_region 946 995 . ? . description=dust scaffold_674 . biological_region 7150 7152 0.999 + . logic_name=eponine scaffold_674 . biological_region 7251 7255 0.999 - . logic_name=eponine scaffold_674 . biological_region 7410 7417 0.999 - . logic_name=eponine scaffold_674 . biological_region 7460 7462 0.999 - . logic_name=eponine scaffold_674 . repeat_region 8505 8551 . ? . description=trf scaffold_674 . repeat_region 8505 8553 . ? . description=trf scaffold_674 . repeat_region 8514 8556 . ? . description=dust scaffold_674 . repeat_region 8609 8715 . ? . description=dust scaffold_674 . repeat_region 8646 8687 . ? . description=trf scaffold_674 . repeat_region 8821 8853 . ? . description=trf scaffold_674 . repeat_region 8821 8858 . ? . description=trf scaffold_674 . repeat_region 8929 9056 . ? . description=dust scaffold_674 . repeat_region 8929 9064 . ? . description=trf scaffold_674 ensembl tRNA_gene 8746 8818 . + . ID=EPrPRAG00000000046;biotype=tRNA;description=tRNA-Glu for anticodon UUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_674 ensembl transcript 8746 8818 . + . ID=EPrPRAT00000000046;Parent=EPrPRAG00000000046;biotype=tRNA;logic_name=ncrna_eg scaffold_674 . exon 8746 8818 . + . ID=EPrPRAE00000000046;Parent=EPrPRAT00000000046;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_666 1 9136 scaffold_666 . repeat_region 732 747 . ? . description=dust scaffold_666 . repeat_region 1190 6952 . ? . description=dust scaffold_666 ensembl protein_coding_gene 7381 8114 . + . ID=Phyra72421;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_666000001;logic_name=jgi_phyra1 scaffold_666 ensembl transcript 7381 8114 . + . ID=Phyra72421;Parent=Phyra72421;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_666 . CDS 7381 7631 . + 0 ID=Phyra72421;Parent=Phyra72421;rank=1 scaffold_666 . exon 7381 7631 . + . ID=Phyra72421.1;Parent=Phyra72421;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_666 . CDS 7707 7940 . + 0 ID=Phyra72421;Parent=Phyra72421;rank=2 scaffold_666 . exon 7707 7940 . + . ID=Phyra72421.2;Parent=Phyra72421;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_666 . CDS 8006 8114 . + 0 ID=Phyra72421;Parent=Phyra72421;rank=3 scaffold_666 . exon 8006 8114 . + . ID=Phyra72421.3;Parent=Phyra72421;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_673 1 9142 scaffold_673 . repeat_region 740 748 . ? . description=dust scaffold_673 . repeat_region 1947 2023 . ? . description=trf scaffold_673 . repeat_region 2888 8191 . ? . description=dust scaffold_673 . repeat_region 8192 9139 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_664 1 9148 scaffold_664 . repeat_region 1810 7827 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_662 1 9157 scaffold_662 . repeat_region 1318 7123 . ? . description=dust scaffold_662 ensembl protein_coding_gene 117 1096 . - . ID=Phyra86393;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_662000001;logic_name=jgi_phyra1 scaffold_662 ensembl transcript 117 1096 . - . ID=Phyra86393;Parent=Phyra86393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_662 . CDS 117 1096 . - 0 ID=Phyra86393;Parent=Phyra86393;rank=1 scaffold_662 . exon 117 1096 . - . ID=Phyra86393.1;Parent=Phyra86393;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_662 ensembl protein_coding_gene 7364 8470 . + . ID=Phyra86394;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_662000002;logic_name=jgi_phyra1 scaffold_662 ensembl transcript 7364 8470 . + . ID=Phyra86394;Parent=Phyra86394;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_662 . CDS 7364 7771 . + 0 ID=Phyra86394;Parent=Phyra86394;rank=1 scaffold_662 . exon 7364 7771 . + . ID=Phyra86394.1;Parent=Phyra86394;constitutive=1;rank=1 scaffold_662 . CDS 7914 8169 . + 0 ID=Phyra86394;Parent=Phyra86394;rank=2 scaffold_662 . exon 7914 8169 . + . ID=Phyra86394.2;Parent=Phyra86394;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_662 . CDS 8196 8470 . + 0 ID=Phyra86394;Parent=Phyra86394;rank=3 scaffold_662 . exon 8196 8470 . + . ID=Phyra86394.3;Parent=Phyra86394;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_659 1 9178 scaffold_659 . repeat_region 1440 6949 . ? . description=dust scaffold_659 . biological_region 7019 7024 0.999 + . logic_name=eponine scaffold_659 . biological_region 7305 7307 0.999 - . logic_name=eponine scaffold_659 . biological_region 7358 7359 0.999 - . logic_name=eponine scaffold_659 . repeat_region 8019 8085 . ? . description=trf scaffold_659 . repeat_region 8055 8096 . ? . description=trf scaffold_659 ensembl protein_coding_gene 101 1087 . - . ID=Phyra86384;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_659000001;logic_name=jgi_phyra1 scaffold_659 ensembl transcript 101 1087 . - . ID=Phyra86384;Parent=Phyra86384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_659 . CDS 101 584 . - 0 ID=Phyra86384;Parent=Phyra86384;rank=2 scaffold_659 . exon 101 584 . - . ID=Phyra86384.2;Parent=Phyra86384;constitutive=1;ensembl_phase=2;rank=2 scaffold_659 . CDS 771 1087 . - 0 ID=Phyra86384;Parent=Phyra86384;rank=1 scaffold_659 . exon 771 1087 . - . ID=Phyra86384.1;Parent=Phyra86384;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_659 ensembl protein_coding_gene 6991 7733 . - . ID=Phyra86385;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_659000002;logic_name=jgi_phyra1 scaffold_659 ensembl transcript 6991 7733 . - . ID=Phyra86385;Parent=Phyra86385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_659 . CDS 6991 7058 . - 0 ID=Phyra86385;Parent=Phyra86385;rank=2 scaffold_659 . exon 6991 7058 . - . ID=Phyra86385.2;Parent=Phyra86385;constitutive=1;ensembl_phase=1;rank=2 scaffold_659 . CDS 7079 7733 . - 0 ID=Phyra86385;Parent=Phyra86385;rank=1 scaffold_659 . exon 7079 7733 . - . ID=Phyra86385.1;Parent=Phyra86385;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_657 1 9201 scaffold_657 . repeat_region 3262 3821 . ? . description=dust scaffold_657 . repeat_region 4918 8143 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_656 1 9207 scaffold_656 . repeat_region 383 390 . ? . description=dust scaffold_656 . repeat_region 2603 2659 . ? . description=trf scaffold_656 . repeat_region 2687 7494 . ? . description=dust scaffold_656 . biological_region 7577 7582 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_661 1 9215 scaffold_661 . biological_region 1 3 0.999 + . logic_name=eponine scaffold_661 . biological_region 45 48 0.999 + . logic_name=eponine scaffold_661 . biological_region 77 80 0.999 - . logic_name=eponine scaffold_661 . biological_region 104 106 0.999 + . logic_name=eponine scaffold_661 . biological_region 346 350 0.999 - . logic_name=eponine scaffold_661 . biological_region 703 706 0.999 + . logic_name=eponine scaffold_661 . biological_region 754 757 0.999 + . logic_name=eponine scaffold_661 . biological_region 853 853 0.999 - . logic_name=eponine scaffold_661 . biological_region 1782 1782 0.999 + . logic_name=eponine scaffold_661 . biological_region 3317 3321 0.999 + . logic_name=eponine scaffold_661 . repeat_region 3481 3563 . ? . description=dust scaffold_661 . biological_region 3765 3767 0.999 + . logic_name=eponine scaffold_661 . biological_region 4131 4137 0.999 + . logic_name=eponine scaffold_661 . repeat_region 6853 6925 . ? . description=dust scaffold_661 ensembl protein_coding_gene 1997 3052 . + . ID=Phyra72420;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_661000001;logic_name=jgi_phyra1 scaffold_661 ensembl transcript 1997 3052 . + . ID=Phyra72420;Parent=Phyra72420;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_661 . CDS 1997 3052 . + 0 ID=Phyra72420;Parent=Phyra72420;rank=1 scaffold_661 . exon 1997 3052 . + . ID=Phyra72420.1;Parent=Phyra72420;constitutive=1;rank=1 scaffold_661 ensembl protein_coding_gene 162 1894 . + . ID=Phyra86389;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_661000001;logic_name=jgi_phyra1 scaffold_661 ensembl transcript 162 1894 . + . ID=Phyra86389;Parent=Phyra86389;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_661 . exon 162 414 . + . ID=Phyra86389.1;Parent=Phyra86389;constitutive=1;ensembl_phase=-1;rank=1 scaffold_661 . CDS 163 414 . + 0 ID=Phyra86389;Parent=Phyra86389;rank=1 scaffold_661 . CDS 509 1894 . + 0 ID=Phyra86389;Parent=Phyra86389;rank=2 scaffold_661 . exon 509 1894 . + . ID=Phyra86389.2;Parent=Phyra86389;constitutive=1;rank=2 scaffold_661 ensembl protein_coding_gene 3596 5896 . + . ID=Phyra86391;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_661000003;logic_name=jgi_phyra1 scaffold_661 ensembl transcript 3596 5896 . + . ID=Phyra86391;Parent=Phyra86391;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_661 . CDS 3596 4282 . + 0 ID=Phyra86391;Parent=Phyra86391;rank=1 scaffold_661 . exon 3596 4282 . + . ID=Phyra86391.1;Parent=Phyra86391;constitutive=1;rank=1 scaffold_661 . CDS 4331 5896 . + 0 ID=Phyra86391;Parent=Phyra86391;rank=2 scaffold_661 . exon 4331 5896 . + . ID=Phyra86391.2;Parent=Phyra86391;constitutive=1;rank=2 scaffold_661 ensembl protein_coding_gene 7459 8067 . + . ID=Phyra86392;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_661000004;logic_name=jgi_phyra1 scaffold_661 ensembl transcript 7459 8067 . + . ID=Phyra86392;Parent=Phyra86392;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_661 . CDS 7459 7579 . + 0 ID=Phyra86392;Parent=Phyra86392;rank=1 scaffold_661 . exon 7459 7579 . + . ID=Phyra86392.1;Parent=Phyra86392;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_661 . CDS 7742 8067 . + 0 ID=Phyra86392;Parent=Phyra86392;rank=2 scaffold_661 . exon 7742 8067 . + . ID=Phyra86392.2;Parent=Phyra86392;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_658 1 9219 scaffold_658 . repeat_region 20 27 . ? . description=dust scaffold_658 . biological_region 3156 3157 0.999 + . logic_name=eponine scaffold_658 . repeat_region 3790 4223 . ? . description=dust scaffold_658 . repeat_region 6074 6107 . ? . description=trf scaffold_658 . repeat_region 6242 6961 . ? . description=dust scaffold_658 . repeat_region 8880 9002 . + . description=GypsyPi-1c_I-int scaffold_658 . repeat_region 9099 9218 . + . description=GypsyPi-1c_I-int scaffold_658 ensembl protein_coding_gene 1300 1656 . - . ID=Phyra52093;biotype=protein_coding;external_name=gwEuk.658.1.1;logic_name=jgi_phyra1 scaffold_658 ensembl transcript 1300 1656 . - . ID=Phyra52093;Parent=Phyra52093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_658 . CDS 1300 1656 . - 0 ID=Phyra52093;Parent=Phyra52093;rank=1 scaffold_658 . exon 1300 1656 . - . ID=Phyra52093.1;Parent=Phyra52093;constitutive=1;rank=1 scaffold_658 ensembl protein_coding_gene 478 834 . - . ID=Phyra52094;biotype=protein_coding;external_name=gwEuk.658.2.1;logic_name=jgi_phyra1 scaffold_658 ensembl transcript 478 834 . - . ID=Phyra52094;Parent=Phyra52094;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_658 . CDS 478 834 . - 0 ID=Phyra52094;Parent=Phyra52094;rank=1 scaffold_658 . exon 478 834 . - . ID=Phyra52094.1;Parent=Phyra52094;constitutive=1;rank=1 scaffold_658 ensembl protein_coding_gene 7875 8177 . + . ID=Phyra86383;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_658000002;logic_name=jgi_phyra1 scaffold_658 ensembl transcript 7875 8177 . + . ID=Phyra86383;Parent=Phyra86383;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_658 . CDS 7875 8177 . + 0 ID=Phyra86383;Parent=Phyra86383;rank=1 scaffold_658 . exon 7875 8177 . + . ID=Phyra86383.1;Parent=Phyra86383;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_654 1 9222 scaffold_654 . biological_region 1185 1185 0.999 + . logic_name=eponine scaffold_654 . repeat_region 2619 3020 . ? . description=dust scaffold_654 . biological_region 3793 3795 0.999 - . logic_name=eponine scaffold_654 . biological_region 3886 3887 0.999 + . logic_name=eponine scaffold_654 . biological_region 3977 3980 0.999 - . logic_name=eponine scaffold_654 . repeat_region 4155 6971 . ? . description=dust scaffold_654 . biological_region 7825 7827 0.999 - . logic_name=eponine scaffold_654 ensembl protein_coding_gene 8858 9175 . - . ID=Phyra86379;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_654000001;logic_name=jgi_phyra1 scaffold_654 ensembl transcript 8858 9175 . - . ID=Phyra86379;Parent=Phyra86379;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_654 . CDS 8858 9175 . - 0 ID=Phyra86379;Parent=Phyra86379;rank=1 scaffold_654 . exon 8858 9175 . - . ID=Phyra86379.1;Parent=Phyra86379;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_655 1 9222 scaffold_655 . repeat_region 2301 6786 . ? . description=dust scaffold_655 . biological_region 9071 9075 0.999 - . logic_name=eponine scaffold_655 ensembl protein_coding_gene 166 788 . + . ID=Phyra86380;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_655000001;logic_name=jgi_phyra1 scaffold_655 ensembl transcript 166 788 . + . ID=Phyra86380;Parent=Phyra86380;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_655 . CDS 166 730 . + 0 ID=Phyra86380;Parent=Phyra86380;rank=1 scaffold_655 . exon 166 730 . + . ID=Phyra86380.1;Parent=Phyra86380;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_655 . CDS 781 788 . + 0 ID=Phyra86380;Parent=Phyra86380;rank=2 scaffold_655 . exon 781 788 . + . ID=Phyra86380.2;Parent=Phyra86380;constitutive=1;ensembl_phase=1;rank=2 scaffold_655 ensembl protein_coding_gene 7713 9205 . + . ID=Phyra86381;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_655000002;logic_name=jgi_phyra1 scaffold_655 ensembl transcript 7713 9205 . + . ID=Phyra86381;Parent=Phyra86381;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_655 . CDS 7713 7752 . + 0 ID=Phyra86381;Parent=Phyra86381;rank=1 scaffold_655 . exon 7713 7752 . + . ID=Phyra86381.1;Parent=Phyra86381;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_655 . CDS 7826 7966 . + 0 ID=Phyra86381;Parent=Phyra86381;rank=2 scaffold_655 . exon 7826 7966 . + . ID=Phyra86381.2;Parent=Phyra86381;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_655 . CDS 8037 9205 . + 0 ID=Phyra86381;Parent=Phyra86381;rank=3 scaffold_655 . exon 8037 9205 . + . ID=Phyra86381.3;Parent=Phyra86381;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_652 1 9230 scaffold_652 . repeat_region 2 585 . - . description=GypsyPi-1c_I-int scaffold_652 . repeat_region 586 895 . - . description=GypsyPi-1c_LTR scaffold_652 . repeat_region 906 914 . ? . description=dust scaffold_652 . repeat_region 991 5208 . ? . description=dust scaffold_652 . repeat_region 6288 6374 . ? . description=trf scaffold_652 . repeat_region 6504 6923 . ? . description=dust scaffold_652 . repeat_region 8617 8648 . ? . description=trf scaffold_652 . repeat_region 8755 8843 . ? . description=trf scaffold_652 . repeat_region 8911 8969 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_651 1 9235 scaffold_651 . biological_region 307 312 0.999 + . logic_name=eponine scaffold_651 . repeat_region 660 726 . ? . description=trf scaffold_651 . repeat_region 660 739 . ? . description=trf scaffold_651 . biological_region 802 808 0.999 - . logic_name=eponine scaffold_651 . biological_region 860 863 0.999 - . logic_name=eponine scaffold_651 . repeat_region 1557 6788 . ? . description=dust scaffold_651 . biological_region 8175 8177 0.999 - . logic_name=eponine scaffold_651 ensembl protein_coding_gene 82 1257 . - . ID=Phyra86377;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_651000001;logic_name=jgi_phyra1 scaffold_651 ensembl transcript 82 1257 . - . ID=Phyra86377;Parent=Phyra86377;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_651 . CDS 82 1257 . - 0 ID=Phyra86377;Parent=Phyra86377;rank=1 scaffold_651 . exon 82 1257 . - . ID=Phyra86377.1;Parent=Phyra86377;constitutive=1;rank=1 scaffold_651 ensembl protein_coding_gene 6917 9187 . + . ID=Phyra86378;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_651000002;logic_name=jgi_phyra1 scaffold_651 ensembl transcript 6917 9187 . + . ID=Phyra86378;Parent=Phyra86378;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_651 . CDS 6917 9187 . + 0 ID=Phyra86378;Parent=Phyra86378;rank=1 scaffold_651 . exon 6917 9187 . + . ID=Phyra86378.1;Parent=Phyra86378;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_650 1 9237 scaffold_650 . repeat_region 1001 1028 . ? . description=trf scaffold_650 . biological_region 2849 2849 0.999 - . logic_name=eponine scaffold_650 . biological_region 2860 2862 0.999 + . logic_name=eponine scaffold_650 . biological_region 2883 2886 0.999 + . logic_name=eponine scaffold_650 . biological_region 2926 2931 0.999 - . logic_name=eponine scaffold_650 . repeat_region 4254 4262 . ? . description=dust scaffold_650 . biological_region 5811 5812 0.999 + . logic_name=eponine scaffold_650 ensembl protein_coding_gene 5393 6143 . + . ID=Phyra52084;biotype=protein_coding;external_name=gwEuk.650.8.1;logic_name=jgi_phyra1 scaffold_650 ensembl transcript 5393 6143 . + . ID=Phyra52084;Parent=Phyra52084;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_650 . CDS 5393 5493 . + 0 ID=Phyra52084;Parent=Phyra52084;rank=1 scaffold_650 . exon 5393 5493 . + . ID=Phyra52084.1;Parent=Phyra52084;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_650 . CDS 5571 5712 . + 0 ID=Phyra52084;Parent=Phyra52084;rank=2 scaffold_650 . exon 5571 5712 . + . ID=Phyra52084.2;Parent=Phyra52084;constitutive=1;ensembl_phase=2;rank=2 scaffold_650 . CDS 5796 5917 . + 0 ID=Phyra52084;Parent=Phyra52084;rank=3 scaffold_650 . exon 5796 5917 . + . ID=Phyra52084.3;Parent=Phyra52084;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_650 . CDS 5987 6143 . + 0 ID=Phyra52084;Parent=Phyra52084;rank=4 scaffold_650 . exon 5987 6143 . + . ID=Phyra52084.4;Parent=Phyra52084;constitutive=1;ensembl_phase=2;rank=4 scaffold_650 ensembl protein_coding_gene 2 925 . - . ID=Phyra52089;biotype=protein_coding;external_name=gwEuk.650.13.1;logic_name=jgi_phyra1 scaffold_650 ensembl transcript 2 925 . - . ID=Phyra52089;Parent=Phyra52089;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_650 . CDS 2 925 . - 0 ID=Phyra52089;Parent=Phyra52089;rank=1 scaffold_650 . exon 2 925 . - . ID=Phyra52089.1;Parent=Phyra52089;constitutive=1;rank=1 scaffold_650 ensembl protein_coding_gene 1827 3014 . - . ID=Phyra86372;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_650000002;logic_name=jgi_phyra1 scaffold_650 ensembl transcript 1827 3014 . - . ID=Phyra86372;Parent=Phyra86372;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_650 . CDS 1827 3014 . - 0 ID=Phyra86372;Parent=Phyra86372;rank=1 scaffold_650 . exon 1827 3014 . - . ID=Phyra86372.1;Parent=Phyra86372;constitutive=1;rank=1 scaffold_650 ensembl protein_coding_gene 4534 5113 . - . ID=Phyra86373;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_650000003;logic_name=jgi_phyra1 scaffold_650 ensembl transcript 4534 5113 . - . ID=Phyra86373;Parent=Phyra86373;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_650 . CDS 4534 4613 . - 0 ID=Phyra86373;Parent=Phyra86373;rank=4 scaffold_650 . exon 4534 4613 . - . ID=Phyra86373.4;Parent=Phyra86373;constitutive=1;ensembl_phase=1;rank=4 scaffold_650 . CDS 4692 4769 . - 0 ID=Phyra86373;Parent=Phyra86373;rank=3 scaffold_650 . exon 4692 4769 . - . ID=Phyra86373.3;Parent=Phyra86373;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_650 . CDS 4838 4912 . - 0 ID=Phyra86373;Parent=Phyra86373;rank=2 scaffold_650 . exon 4838 4912 . - . ID=Phyra86373.2;Parent=Phyra86373;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_650 . CDS 4978 5113 . - 0 ID=Phyra86373;Parent=Phyra86373;rank=1 scaffold_650 . exon 4978 5113 . - . ID=Phyra86373.1;Parent=Phyra86373;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_650 ensembl protein_coding_gene 6361 7852 . - . ID=Phyra86375;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_650000005;logic_name=jgi_phyra1 scaffold_650 ensembl transcript 6361 7852 . - . ID=Phyra86375;Parent=Phyra86375;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_650 . CDS 6361 6436 . - 0 ID=Phyra86375;Parent=Phyra86375;rank=9 scaffold_650 . exon 6361 6436 . - . ID=Phyra86375.9;Parent=Phyra86375;constitutive=1;ensembl_phase=2;rank=9 scaffold_650 . CDS 6512 6573 . - 0 ID=Phyra86375;Parent=Phyra86375;rank=8 scaffold_650 . exon 6512 6573 . - . ID=Phyra86375.8;Parent=Phyra86375;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_650 . CDS 6648 6745 . - 0 ID=Phyra86375;Parent=Phyra86375;rank=7 scaffold_650 . exon 6648 6745 . - . ID=Phyra86375.7;Parent=Phyra86375;constitutive=1;ensembl_phase=1;rank=7 scaffold_650 . CDS 6830 6934 . - 0 ID=Phyra86375;Parent=Phyra86375;rank=6 scaffold_650 . exon 6830 6934 . - . ID=Phyra86375.6;Parent=Phyra86375;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_650 . CDS 7029 7110 . - 0 ID=Phyra86375;Parent=Phyra86375;rank=5 scaffold_650 . exon 7029 7110 . - . ID=Phyra86375.5;Parent=Phyra86375;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_650 . CDS 7300 7422 . - 0 ID=Phyra86375;Parent=Phyra86375;rank=4 scaffold_650 . exon 7300 7422 . - . ID=Phyra86375.4;Parent=Phyra86375;constitutive=1;rank=4 scaffold_650 . CDS 7490 7597 . - 0 ID=Phyra86375;Parent=Phyra86375;rank=3 scaffold_650 . exon 7490 7597 . - . ID=Phyra86375.3;Parent=Phyra86375;constitutive=1;rank=3 scaffold_650 . CDS 7674 7768 . - 0 ID=Phyra86375;Parent=Phyra86375;rank=2 scaffold_650 . exon 7674 7768 . - . ID=Phyra86375.2;Parent=Phyra86375;constitutive=1;ensembl_phase=1;rank=2 scaffold_650 . CDS 7843 7852 . - 0 ID=Phyra86375;Parent=Phyra86375;rank=1 scaffold_650 . exon 7843 7852 . - . ID=Phyra86375.1;Parent=Phyra86375;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_650 ensembl protein_coding_gene 8168 9229 . + . ID=Phyra86376;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_650000006;logic_name=jgi_phyra1 scaffold_650 ensembl transcript 8168 9229 . + . ID=Phyra86376;Parent=Phyra86376;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_650 . CDS 8168 8283 . + 0 ID=Phyra86376;Parent=Phyra86376;rank=1 scaffold_650 . exon 8168 8283 . + . ID=Phyra86376.1;Parent=Phyra86376;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_650 . CDS 8360 8387 . + 0 ID=Phyra86376;Parent=Phyra86376;rank=2 scaffold_650 . exon 8360 8387 . + . ID=Phyra86376.2;Parent=Phyra86376;constitutive=1;ensembl_phase=2;rank=2 scaffold_650 . CDS 8471 8582 . + 0 ID=Phyra86376;Parent=Phyra86376;rank=3 scaffold_650 . exon 8471 8582 . + . ID=Phyra86376.3;Parent=Phyra86376;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_650 . CDS 8665 8771 . + 0 ID=Phyra86376;Parent=Phyra86376;rank=4 scaffold_650 . exon 8665 8771 . + . ID=Phyra86376.4;Parent=Phyra86376;constitutive=1;ensembl_phase=1;rank=4 scaffold_650 . CDS 8843 9007 . + 0 ID=Phyra86376;Parent=Phyra86376;rank=5 scaffold_650 . exon 8843 9007 . + . ID=Phyra86376.5;Parent=Phyra86376;constitutive=1;rank=5 scaffold_650 . CDS 9082 9229 . + 0 ID=Phyra86376;Parent=Phyra86376;rank=6 scaffold_650 . exon 9082 9229 . + . ID=Phyra86376.6;Parent=Phyra86376;constitutive=1;ensembl_end_phase=1;rank=6 ##gff-version 3 ##sequence-region scaffold_667 1 9237 scaffold_667 . biological_region 56 58 0.999 + . logic_name=eponine scaffold_667 . biological_region 768 772 0.999 + . logic_name=eponine scaffold_667 . repeat_region 836 906 . ? . description=trf scaffold_667 . biological_region 1196 1197 0.999 - . logic_name=eponine scaffold_667 . repeat_region 1292 2482 . ? . description=dust scaffold_667 . repeat_region 3837 5027 . ? . description=dust scaffold_667 . repeat_region 6064 6916 . ? . description=dust scaffold_667 . biological_region 7808 7811 0.999 - . logic_name=eponine scaffold_667 . biological_region 8147 8151 0.999 + . logic_name=eponine scaffold_667 . biological_region 8271 8272 0.999 - . logic_name=eponine scaffold_667 . biological_region 8856 8858 0.999 + . logic_name=eponine scaffold_667 ensembl protein_coding_gene 62 975 . + . ID=Phyra86398;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_667000001;logic_name=jgi_phyra1 scaffold_667 ensembl transcript 62 975 . + . ID=Phyra86398;Parent=Phyra86398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_667 . exon 62 932 . + . ID=Phyra86398.1;Parent=Phyra86398;constitutive=1;ensembl_phase=-1;rank=1 scaffold_667 . CDS 63 932 . + 0 ID=Phyra86398;Parent=Phyra86398;rank=1 scaffold_667 . CDS 970 975 . + 0 ID=Phyra86398;Parent=Phyra86398;rank=2 scaffold_667 . exon 970 975 . + . ID=Phyra86398.2;Parent=Phyra86398;constitutive=1;rank=2 scaffold_667 ensembl protein_coding_gene 7082 9175 . - . ID=Phyra86399;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_667000002;logic_name=jgi_phyra1 scaffold_667 ensembl transcript 7082 9175 . - . ID=Phyra86399;Parent=Phyra86399;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_667 . CDS 7082 9175 . - 0 ID=Phyra86399;Parent=Phyra86399;rank=1 scaffold_667 . exon 7082 9175 . - . ID=Phyra86399.1;Parent=Phyra86399;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_649 1 9239 scaffold_649 . biological_region 790 795 0.999 - . logic_name=eponine scaffold_649 . repeat_region 2324 8072 . ? . description=dust scaffold_649 . biological_region 8364 8368 0.999 + . logic_name=eponine scaffold_649 ensembl protein_coding_gene 447 1324 . + . ID=Phyra86370;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_649000001;logic_name=jgi_phyra1 scaffold_649 ensembl transcript 447 1324 . + . ID=Phyra86370;Parent=Phyra86370;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_649 . CDS 447 545 . + 0 ID=Phyra86370;Parent=Phyra86370;rank=1 scaffold_649 . exon 447 545 . + . ID=Phyra86370.1;Parent=Phyra86370;constitutive=1;rank=1 scaffold_649 . CDS 698 778 . + 0 ID=Phyra86370;Parent=Phyra86370;rank=2 scaffold_649 . exon 698 778 . + . ID=Phyra86370.2;Parent=Phyra86370;constitutive=1;rank=2 scaffold_649 . CDS 878 1324 . + 0 ID=Phyra86370;Parent=Phyra86370;rank=3 scaffold_649 . exon 878 1324 . + . ID=Phyra86370.3;Parent=Phyra86370;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_648 1 9245 scaffold_648 . biological_region 443 451 0.999 + . logic_name=eponine scaffold_648 . biological_region 489 492 0.999 - . logic_name=eponine scaffold_648 . repeat_region 775 6786 . ? . description=dust scaffold_648 . biological_region 9164 9166 0.999 + . logic_name=eponine scaffold_648 ensembl protein_coding_gene 6847 9242 . + . ID=Phyra86369;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_648000001;logic_name=jgi_phyra1 scaffold_648 ensembl transcript 6847 9242 . + . ID=Phyra86369;Parent=Phyra86369;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_648 . CDS 6847 9242 . + 0 ID=Phyra86369;Parent=Phyra86369;rank=1 scaffold_648 . exon 6847 9242 . + . ID=Phyra86369.1;Parent=Phyra86369;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_647 1 9247 scaffold_647 . repeat_region 609 768 . + . description=GypsyPi-1c_LTR scaffold_647 . repeat_region 921 928 . ? . description=dust scaffold_647 . biological_region 3293 3297 0.999 - . logic_name=eponine scaffold_647 . biological_region 3331 3331 0.999 - . logic_name=eponine scaffold_647 . repeat_region 3390 3397 . ? . description=dust scaffold_647 . biological_region 3635 3637 0.999 + . logic_name=eponine scaffold_647 . biological_region 3743 3746 0.999 - . logic_name=eponine scaffold_647 . repeat_region 5128 7679 . ? . description=dust scaffold_647 . repeat_region 8423 8447 . ? . description=trf scaffold_647 . repeat_region 8671 9014 . - . description=GypsyPi-1c_I-int scaffold_647 ensembl protein_coding_gene 2261 4976 . + . ID=Phyra86368;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_647000001;logic_name=jgi_phyra1 scaffold_647 ensembl transcript 2261 4976 . + . ID=Phyra86368;Parent=Phyra86368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_647 . CDS 2261 2323 . + 0 ID=Phyra86368;Parent=Phyra86368;rank=1 scaffold_647 . exon 2261 2323 . + . ID=Phyra86368.1;Parent=Phyra86368;constitutive=1;rank=1 scaffold_647 . CDS 2698 2856 . + 0 ID=Phyra86368;Parent=Phyra86368;rank=2 scaffold_647 . exon 2698 2856 . + . ID=Phyra86368.2;Parent=Phyra86368;constitutive=1;rank=2 scaffold_647 . CDS 2959 3022 . + 0 ID=Phyra86368;Parent=Phyra86368;rank=3 scaffold_647 . exon 2959 3022 . + . ID=Phyra86368.3;Parent=Phyra86368;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_647 . CDS 3079 3300 . + 0 ID=Phyra86368;Parent=Phyra86368;rank=4 scaffold_647 . exon 3079 3300 . + . ID=Phyra86368.4;Parent=Phyra86368;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_647 . CDS 3527 4925 . + 0 ID=Phyra86368;Parent=Phyra86368;rank=5 scaffold_647 . exon 3527 4925 . + . ID=Phyra86368.5;Parent=Phyra86368;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_647 . CDS 4964 4976 . + 0 ID=Phyra86368;Parent=Phyra86368;rank=6 scaffold_647 . exon 4964 4976 . + . ID=Phyra86368.6;Parent=Phyra86368;constitutive=1;ensembl_phase=2;rank=6 ##gff-version 3 ##sequence-region scaffold_502 1 9249 scaffold_502 . biological_region 626 628 0.999 - . logic_name=eponine scaffold_502 . biological_region 2833 2836 0.999 + . logic_name=eponine scaffold_502 ensembl protein_coding_gene 13 2180 . - . ID=Phyra86163;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_502000001;logic_name=jgi_phyra1 scaffold_502 ensembl transcript 13 2180 . - . ID=Phyra86163;Parent=Phyra86163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_502 . CDS 13 2180 . - 0 ID=Phyra86163;Parent=Phyra86163;rank=1 scaffold_502 . exon 13 2180 . - . ID=Phyra86163.1;Parent=Phyra86163;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_502 ensembl protein_coding_gene 3726 7854 . - . ID=Phyra86164;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_502000002;logic_name=jgi_phyra1 scaffold_502 ensembl transcript 3726 7854 . - . ID=Phyra86164;Parent=Phyra86164;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_502 . CDS 3726 7596 . - 0 ID=Phyra86164;Parent=Phyra86164;rank=2 scaffold_502 . exon 3726 7596 . - . ID=Phyra86164.2;Parent=Phyra86164;constitutive=1;ensembl_phase=2;rank=2 scaffold_502 . CDS 7634 7854 . - 0 ID=Phyra86164;Parent=Phyra86164;rank=1 scaffold_502 . exon 7634 7854 . - . ID=Phyra86164.1;Parent=Phyra86164;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_660 1 9249 scaffold_660 . repeat_region 961 978 . ? . description=dust scaffold_660 . biological_region 1075 1079 0.999 - . logic_name=eponine scaffold_660 . repeat_region 1325 1351 . ? . description=trf scaffold_660 . repeat_region 1359 4199 . ? . description=dust scaffold_660 . repeat_region 5800 5813 . ? . description=dust scaffold_660 . repeat_region 6164 6405 . ? . description=dust scaffold_660 . repeat_region 8260 8309 . ? . description=dust scaffold_660 . biological_region 8792 8796 0.999 + . logic_name=eponine scaffold_660 . biological_region 8808 8812 0.999 + . logic_name=eponine scaffold_660 ensembl protein_coding_gene 6538 7374 . + . ID=Phyra72419;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_660000001;logic_name=jgi_phyra1 scaffold_660 ensembl transcript 6538 7374 . + . ID=Phyra72419;Parent=Phyra72419;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_660 . CDS 6538 7374 . + 0 ID=Phyra72419;Parent=Phyra72419;rank=1 scaffold_660 . exon 6538 7374 . + . ID=Phyra72419.1;Parent=Phyra72419;constitutive=1;rank=1 scaffold_660 ensembl protein_coding_gene 1 358 . + . ID=Phyra86386;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_660000001;logic_name=jgi_phyra1 scaffold_660 ensembl transcript 1 358 . + . ID=Phyra86386;Parent=Phyra86386;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_660 . CDS 1 317 . + 0 ID=Phyra86386;Parent=Phyra86386;rank=1 scaffold_660 . exon 1 317 . + . ID=Phyra86386.1;Parent=Phyra86386;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_660 . CDS 346 358 . + 0 ID=Phyra86386;Parent=Phyra86386;rank=2 scaffold_660 . exon 346 358 . + . ID=Phyra86386.2;Parent=Phyra86386;constitutive=1;ensembl_phase=2;rank=2 scaffold_660 ensembl protein_coding_gene 4453 4897 . - . ID=Phyra86387;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_660000002;logic_name=jgi_phyra1 scaffold_660 ensembl transcript 4453 4897 . - . ID=Phyra86387;Parent=Phyra86387;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_660 . CDS 4453 4831 . - 0 ID=Phyra86387;Parent=Phyra86387;rank=2 scaffold_660 . exon 4453 4831 . - . ID=Phyra86387.2;Parent=Phyra86387;constitutive=1;ensembl_phase=2;rank=2 scaffold_660 . CDS 4893 4897 . - 0 ID=Phyra86387;Parent=Phyra86387;rank=1 scaffold_660 . exon 4893 4897 . - . ID=Phyra86387.1;Parent=Phyra86387;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_646 1 9253 scaffold_646 . repeat_region 3010 3017 . ? . description=dust scaffold_646 . repeat_region 3246 7199 . ? . description=dust scaffold_646 . repeat_region 7312 7324 . ? . description=dust scaffold_646 . repeat_region 7655 7702 . ? . description=trf scaffold_646 . biological_region 8191 8191 0.999 - . logic_name=eponine scaffold_646 ensembl protein_coding_gene 1782 2975 . + . ID=Phyra86366;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_646000001;logic_name=jgi_phyra1 scaffold_646 ensembl transcript 1782 2975 . + . ID=Phyra86366;Parent=Phyra86366;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_646 . CDS 1782 2975 . + 0 ID=Phyra86366;Parent=Phyra86366;rank=1 scaffold_646 . exon 1782 2975 . + . ID=Phyra86366.1;Parent=Phyra86366;constitutive=1;rank=1 scaffold_646 ensembl protein_coding_gene 7726 8190 . + . ID=Phyra86367;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_646000002;logic_name=jgi_phyra1 scaffold_646 ensembl transcript 7726 8190 . + . ID=Phyra86367;Parent=Phyra86367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_646 . CDS 7726 8190 . + 0 ID=Phyra86367;Parent=Phyra86367;rank=1 scaffold_646 . exon 7726 8190 . + . ID=Phyra86367.1;Parent=Phyra86367;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_665 1 9257 scaffold_665 . repeat_region 1039 5058 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_645 1 9261 scaffold_645 . repeat_region 1472 1479 . ? . description=dust scaffold_645 . repeat_region 2254 7354 . ? . description=dust scaffold_645 . repeat_region 7461 7545 . - . description=GypsyPi-1c_I-int scaffold_645 . repeat_region 7723 7908 . - . description=GypsyPi-1c_I-int scaffold_645 . biological_region 7980 7980 0.999 + . logic_name=eponine scaffold_645 . repeat_region 8171 9111 . - . description=GypsyPi-1c_I-int scaffold_645 . repeat_region 9148 9257 . - . description=GypsyPi-1c_I-int scaffold_645 ensembl protein_coding_gene 52 929 . - . ID=Phyra86365;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_645000001;logic_name=jgi_phyra1 scaffold_645 ensembl transcript 52 929 . - . ID=Phyra86365;Parent=Phyra86365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_645 . CDS 52 929 . - 0 ID=Phyra86365;Parent=Phyra86365;rank=1 scaffold_645 . exon 52 929 . - . ID=Phyra86365.1;Parent=Phyra86365;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_643 1 9275 scaffold_643 . repeat_region 358 379 . ? . description=dust scaffold_643 . repeat_region 746 915 . ? . description=dust scaffold_643 . repeat_region 1371 1737 . - . description=GypsyPi-1c_I-int scaffold_643 . repeat_region 1743 1883 . ? . description=dust scaffold_643 . repeat_region 2369 3701 . - . description=GypsyPi-1c_I-int scaffold_643 . biological_region 4221 4225 0.999 - . logic_name=eponine scaffold_643 . biological_region 4324 4327 0.999 - . logic_name=eponine scaffold_643 . biological_region 4376 4378 0.999 - . logic_name=eponine scaffold_643 . repeat_region 5510 6410 . ? . description=dust scaffold_643 . repeat_region 7268 7277 . ? . description=dust scaffold_643 ensembl protein_coding_gene 1011 4334 . - . ID=Phyra86362;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_643000001;logic_name=jgi_phyra1 scaffold_643 ensembl transcript 1011 4334 . - . ID=Phyra86362;Parent=Phyra86362;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_643 . CDS 1011 1017 . - 0 ID=Phyra86362;Parent=Phyra86362;rank=5 scaffold_643 . exon 1011 1017 . - . ID=Phyra86362.5;Parent=Phyra86362;constitutive=1;ensembl_phase=2;rank=5 scaffold_643 . CDS 1058 1219 . - 0 ID=Phyra86362;Parent=Phyra86362;rank=4 scaffold_643 . exon 1058 1219 . - . ID=Phyra86362.4;Parent=Phyra86362;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_643 . CDS 1307 1560 . - 0 ID=Phyra86362;Parent=Phyra86362;rank=3 scaffold_643 . exon 1307 1560 . - . ID=Phyra86362.3;Parent=Phyra86362;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_643 . CDS 2003 2374 . - 0 ID=Phyra86362;Parent=Phyra86362;rank=2 scaffold_643 . exon 2003 2374 . - . ID=Phyra86362.2;Parent=Phyra86362;constitutive=1;rank=2 scaffold_643 . CDS 2736 4334 . - 0 ID=Phyra86362;Parent=Phyra86362;rank=1 scaffold_643 . exon 2736 4334 . - . ID=Phyra86362.1;Parent=Phyra86362;constitutive=1;rank=1 scaffold_643 ensembl protein_coding_gene 7958 8788 . + . ID=Phyra86363;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_643000002;logic_name=jgi_phyra1 scaffold_643 ensembl transcript 7958 8788 . + . ID=Phyra86363;Parent=Phyra86363;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_643 . CDS 7958 8788 . + 0 ID=Phyra86363;Parent=Phyra86363;rank=1 scaffold_643 . exon 7958 8788 . + . ID=Phyra86363.1;Parent=Phyra86363;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_640 1 9299 scaffold_640 . repeat_region 651 7157 . ? . description=dust scaffold_640 . repeat_region 8960 8984 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_636 1 9302 scaffold_636 . repeat_region 665 673 . ? . description=dust scaffold_636 . repeat_region 2347 3754 . ? . description=dust scaffold_636 . biological_region 7694 7696 0.999 - . logic_name=eponine scaffold_636 ensembl protein_coding_gene 724 1626 . - . ID=Phyra86356;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_636000001;logic_name=jgi_phyra1 scaffold_636 ensembl transcript 724 1626 . - . ID=Phyra86356;Parent=Phyra86356;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_636 . CDS 724 1626 . - 0 ID=Phyra86356;Parent=Phyra86356;rank=1 scaffold_636 . exon 724 1626 . - . ID=Phyra86356.1;Parent=Phyra86356;constitutive=1;rank=1 scaffold_636 ensembl protein_coding_gene 8120 9103 . + . ID=Phyra86357;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_636000002;logic_name=jgi_phyra1 scaffold_636 ensembl transcript 8120 9103 . + . ID=Phyra86357;Parent=Phyra86357;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_636 . CDS 8120 8497 . + 0 ID=Phyra86357;Parent=Phyra86357;rank=1 scaffold_636 . exon 8120 8497 . + . ID=Phyra86357.1;Parent=Phyra86357;constitutive=1;rank=1 scaffold_636 . CDS 8693 8944 . + 0 ID=Phyra86357;Parent=Phyra86357;rank=2 scaffold_636 . exon 8693 8944 . + . ID=Phyra86357.2;Parent=Phyra86357;constitutive=1;rank=2 scaffold_636 . CDS 9020 9103 . + 0 ID=Phyra86357;Parent=Phyra86357;rank=3 scaffold_636 . exon 9020 9103 . + . ID=Phyra86357.3;Parent=Phyra86357;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_637 1 9306 scaffold_637 . repeat_region 770 4816 . ? . description=dust scaffold_637 . biological_region 4965 4973 0.999 + . logic_name=eponine scaffold_637 . biological_region 5030 5031 0.999 - . logic_name=eponine scaffold_637 . repeat_region 6190 6867 . ? . description=dust scaffold_637 . biological_region 7178 7179 0.999 - . logic_name=eponine scaffold_637 . biological_region 7437 7443 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_642 1 9330 scaffold_642 . repeat_region 1 1199 . + . description=GypsyPi-1c_I-int scaffold_642 . repeat_region 1200 1249 . ? . description=dust scaffold_642 . repeat_region 1288 1374 . ? . description=dust scaffold_642 . biological_region 2213 2216 0.999 + . logic_name=eponine scaffold_642 . biological_region 2251 2251 0.999 - . logic_name=eponine scaffold_642 . repeat_region 2718 5794 . ? . description=dust scaffold_642 . biological_region 8372 8376 0.999 + . logic_name=eponine scaffold_642 ensembl protein_coding_gene 1408 2634 . - . ID=Phyra72417;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_642000001;logic_name=jgi_phyra1 scaffold_642 ensembl transcript 1408 2634 . - . ID=Phyra72417;Parent=Phyra72417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_642 . CDS 1408 2634 . - 0 ID=Phyra72417;Parent=Phyra72417;rank=1 scaffold_642 . exon 1408 2634 . - . ID=Phyra72417.1;Parent=Phyra72417;constitutive=1;rank=1 scaffold_642 ensembl protein_coding_gene 1 1122 . + . ID=Phyra86360;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_642000001;logic_name=jgi_phyra1 scaffold_642 ensembl transcript 1 1122 . + . ID=Phyra86360;Parent=Phyra86360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_642 . exon 1 1058 . + . ID=Phyra86360.1;Parent=Phyra86360;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_642 . CDS 2 1058 . + 0 ID=Phyra86360;Parent=Phyra86360;rank=1 scaffold_642 . CDS 1118 1122 . + 0 ID=Phyra86360;Parent=Phyra86360;rank=2 scaffold_642 . exon 1118 1122 . + . ID=Phyra86360.2;Parent=Phyra86360;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_634 1 9339 scaffold_634 . repeat_region 946 4354 . ? . description=dust scaffold_634 . biological_region 5058 5064 0.999 - . logic_name=eponine scaffold_634 . biological_region 7082 7088 0.999 - . logic_name=eponine scaffold_634 . repeat_region 7870 8014 . ? . description=dust scaffold_634 ensembl protein_coding_gene 4585 5283 . + . ID=Phyra86350;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_634000001;logic_name=jgi_phyra1 scaffold_634 ensembl transcript 4585 5283 . + . ID=Phyra86350;Parent=Phyra86350;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_634 . CDS 4585 5283 . + 0 ID=Phyra86350;Parent=Phyra86350;rank=1 scaffold_634 . exon 4585 5283 . + . ID=Phyra86350.1;Parent=Phyra86350;constitutive=1;rank=1 scaffold_634 ensembl protein_coding_gene 6089 7301 . + . ID=Phyra86351;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_634000002;logic_name=jgi_phyra1 scaffold_634 ensembl transcript 6089 7301 . + . ID=Phyra86351;Parent=Phyra86351;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_634 . CDS 6089 6096 . + 0 ID=Phyra86351;Parent=Phyra86351;rank=1 scaffold_634 . exon 6089 6096 . + . ID=Phyra86351.1;Parent=Phyra86351;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_634 . CDS 6182 7301 . + 0 ID=Phyra86351;Parent=Phyra86351;rank=2 scaffold_634 . exon 6182 7301 . + . ID=Phyra86351.2;Parent=Phyra86351;constitutive=1;ensembl_phase=2;rank=2 scaffold_634 ensembl protein_coding_gene 8043 8432 . - . ID=Phyra86352;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_634000003;logic_name=jgi_phyra1 scaffold_634 ensembl transcript 8043 8432 . - . ID=Phyra86352;Parent=Phyra86352;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_634 . CDS 8043 8432 . - 0 ID=Phyra86352;Parent=Phyra86352;rank=1 scaffold_634 . exon 8043 8432 . - . ID=Phyra86352.1;Parent=Phyra86352;constitutive=1;rank=1 scaffold_634 ensembl protein_coding_gene 8912 9309 . + . ID=Phyra86353;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_634000004;logic_name=jgi_phyra1 scaffold_634 ensembl transcript 8912 9309 . + . ID=Phyra86353;Parent=Phyra86353;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_634 . CDS 8912 9309 . + 0 ID=Phyra86353;Parent=Phyra86353;rank=1 scaffold_634 . exon 8912 9309 . + . ID=Phyra86353.1;Parent=Phyra86353;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_663 1 9341 scaffold_663 . repeat_region 364 409 . ? . description=trf scaffold_663 . repeat_region 3007 6876 . ? . description=dust scaffold_663 . repeat_region 7984 8036 . ? . description=trf scaffold_663 . repeat_region 7984 8040 . ? . description=trf scaffold_663 . repeat_region 8211 8435 . ? . description=dust scaffold_663 ensembl protein_coding_gene 459 1373 . - . ID=Phyra86395;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_663000001;logic_name=jgi_phyra1 scaffold_663 ensembl transcript 459 1373 . - . ID=Phyra86395;Parent=Phyra86395;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_663 . CDS 459 470 . - 0 ID=Phyra86395;Parent=Phyra86395;rank=2 scaffold_663 . exon 459 470 . - . ID=Phyra86395.2;Parent=Phyra86395;constitutive=1;rank=2 scaffold_663 . CDS 603 1373 . - 0 ID=Phyra86395;Parent=Phyra86395;rank=1 scaffold_663 . exon 603 1373 . - . ID=Phyra86395.1;Parent=Phyra86395;constitutive=1;rank=1 scaffold_663 ensembl protein_coding_gene 1944 2303 . + . ID=Phyra86396;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_663000002;logic_name=jgi_phyra1 scaffold_663 ensembl transcript 1944 2303 . + . ID=Phyra86396;Parent=Phyra86396;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_663 . CDS 1944 2303 . + 0 ID=Phyra86396;Parent=Phyra86396;rank=1 scaffold_663 . exon 1944 2303 . + . ID=Phyra86396.1;Parent=Phyra86396;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_633 1 9350 scaffold_633 . biological_region 7659 7661 0.999 - . logic_name=eponine scaffold_633 . biological_region 7684 7687 0.999 + . logic_name=eponine scaffold_633 . biological_region 7730 7736 0.999 - . logic_name=eponine scaffold_633 . biological_region 7747 7753 0.999 - . logic_name=eponine scaffold_633 . biological_region 7811 7812 0.999 - . logic_name=eponine scaffold_633 . biological_region 8024 8026 0.999 + . logic_name=eponine scaffold_633 . biological_region 8373 8378 0.999 + . logic_name=eponine scaffold_633 . biological_region 8699 8700 0.999 + . logic_name=eponine scaffold_633 . repeat_region 9060 9067 . ? . description=dust scaffold_633 ensembl protein_coding_gene 7453 9108 . - . ID=Phyra72416;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_633000001;logic_name=jgi_phyra1 scaffold_633 ensembl transcript 7453 9108 . - . ID=Phyra72416;Parent=Phyra72416;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_633 . CDS 7453 9017 . - 0 ID=Phyra72416;Parent=Phyra72416;rank=2 scaffold_633 . exon 7453 9017 . - . ID=Phyra72416.2;Parent=Phyra72416;constitutive=1;ensembl_phase=1;rank=2 scaffold_633 . CDS 9081 9108 . - 0 ID=Phyra72416;Parent=Phyra72416;rank=1 scaffold_633 . exon 9081 9108 . - . ID=Phyra72416.1;Parent=Phyra72416;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_633 ensembl protein_coding_gene 5843 7305 . - . ID=Phyra86348;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_633000001;logic_name=jgi_phyra1 scaffold_633 ensembl transcript 5843 7305 . - . ID=Phyra86348;Parent=Phyra86348;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_633 . CDS 5843 5856 . - 0 ID=Phyra86348;Parent=Phyra86348;rank=3 scaffold_633 . exon 5843 5856 . - . ID=Phyra86348.3;Parent=Phyra86348;constitutive=1;ensembl_phase=1;rank=3 scaffold_633 . CDS 6021 6942 . - 0 ID=Phyra86348;Parent=Phyra86348;rank=2 scaffold_633 . exon 6021 6942 . - . ID=Phyra86348.2;Parent=Phyra86348;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_633 . CDS 7024 7305 . - 0 ID=Phyra86348;Parent=Phyra86348;rank=1 scaffold_633 . exon 7024 7305 . - . ID=Phyra86348.1;Parent=Phyra86348;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_632 1 9356 scaffold_632 . repeat_region 1 717 . + . description=LSU-rRNA_Hca scaffold_632 . repeat_region 1374 1441 . ? . description=trf scaffold_632 . repeat_region 1734 1743 . ? . description=dust scaffold_632 . biological_region 4757 4758 0.999 + . logic_name=eponine scaffold_632 . repeat_region 5095 5137 . ? . description=trf scaffold_632 . biological_region 7455 7460 0.999 + . logic_name=eponine scaffold_632 . biological_region 8014 8016 0.999 + . logic_name=eponine scaffold_632 . repeat_region 8068 8114 . ? . description=trf scaffold_632 . repeat_region 8875 9059 . ? . description=trf scaffold_632 . repeat_region 9121 9354 . + . description=LSU-rRNA_Hca scaffold_632 ensembl protein_coding_gene 9121 9258 . - . ID=Phyra51913;biotype=protein_coding;external_name=gwEuk.632.1.1;logic_name=jgi_phyra1 scaffold_632 ensembl transcript 9121 9258 . - . ID=Phyra51913;Parent=Phyra51913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_632 . CDS 9121 9258 . - 0 ID=Phyra51913;Parent=Phyra51913;rank=1 scaffold_632 . exon 9121 9258 . - . ID=Phyra51913.1;Parent=Phyra51913;constitutive=1;rank=1 scaffold_632 ensembl pseudogene 174 717 . - . ID=Phyra51918;biotype=pseudogene;external_name=gwEuk.632.6.1;logic_name=jgi_phyra1 scaffold_632 ensembl pseudogene 174 717 . - . ID=Phyra51918;Parent=Phyra51918;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_632 . exon 174 717 . - . ID=Phyra51918.1;Parent=Phyra51918;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_632 ensembl protein_coding_gene 6097 8133 . - . ID=Phyra86347;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_632000001;logic_name=jgi_phyra1 scaffold_632 ensembl transcript 6097 8133 . - . ID=Phyra86347;Parent=Phyra86347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_632 . CDS 6097 8133 . - 0 ID=Phyra86347;Parent=Phyra86347;rank=1 scaffold_632 . exon 6097 8133 . - . ID=Phyra86347.1;Parent=Phyra86347;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_639 1 9356 scaffold_639 . repeat_region 1054 7320 . ? . description=dust scaffold_639 . repeat_region 7952 7979 . ? . description=trf scaffold_639 . repeat_region 8511 8520 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_631 1 9359 scaffold_631 . biological_region 1273 1279 0.999 + . logic_name=eponine scaffold_631 . repeat_region 1989 4580 . ? . description=dust scaffold_631 . biological_region 4876 4877 0.999 - . logic_name=eponine scaffold_631 . biological_region 5215 5220 0.999 - . logic_name=eponine scaffold_631 . biological_region 5275 5278 0.999 - . logic_name=eponine scaffold_631 . biological_region 6074 6077 0.999 + . logic_name=eponine scaffold_631 . biological_region 6132 6137 0.999 + . logic_name=eponine scaffold_631 . biological_region 6475 6476 0.999 + . logic_name=eponine scaffold_631 ensembl protein_coding_gene 4582 4968 . - . ID=Phyra51904;biotype=protein_coding;external_name=gwEuk.631.7.1;logic_name=jgi_phyra1 scaffold_631 ensembl transcript 4582 4968 . - . ID=Phyra51904;Parent=Phyra51904;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_631 . CDS 4582 4968 . - 0 ID=Phyra51904;Parent=Phyra51904;rank=1 scaffold_631 . exon 4582 4968 . - . ID=Phyra51904.1;Parent=Phyra51904;constitutive=1;rank=1 scaffold_631 ensembl protein_coding_gene 6371 8338 . + . ID=Phyra72415;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_631000002;logic_name=jgi_phyra1 scaffold_631 ensembl transcript 6371 8338 . + . ID=Phyra72415;Parent=Phyra72415;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_631 . CDS 6371 8338 . + 0 ID=Phyra72415;Parent=Phyra72415;rank=1 scaffold_631 . exon 6371 8338 . + . ID=Phyra72415.1;Parent=Phyra72415;constitutive=1;rank=1 scaffold_631 ensembl protein_coding_gene 719 1461 . + . ID=Phyra86344;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_631000001;logic_name=jgi_phyra1 scaffold_631 ensembl transcript 719 1461 . + . ID=Phyra86344;Parent=Phyra86344;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_631 . CDS 719 1006 . + 0 ID=Phyra86344;Parent=Phyra86344;rank=1 scaffold_631 . exon 719 1006 . + . ID=Phyra86344.1;Parent=Phyra86344;constitutive=1;rank=1 scaffold_631 . CDS 1027 1461 . + 0 ID=Phyra86344;Parent=Phyra86344;rank=2 scaffold_631 . exon 1027 1461 . + . ID=Phyra86344.2;Parent=Phyra86344;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_706 1 9360 scaffold_706 . biological_region 762 763 0.999 - . logic_name=eponine scaffold_706 . repeat_region 1596 1644 . ? . description=trf scaffold_706 . repeat_region 1680 5054 . ? . description=dust scaffold_706 . repeat_region 6302 7274 . ? . description=dust scaffold_706 . repeat_region 7605 8104 . + . description=GypsyPi-1c_I-int scaffold_706 . repeat_region 8111 8160 . ? . description=dust scaffold_706 . biological_region 8957 8960 0.999 + . logic_name=eponine scaffold_706 . biological_region 8974 8976 0.999 - . logic_name=eponine scaffold_706 . biological_region 9009 9010 0.999 + . logic_name=eponine scaffold_706 . biological_region 9077 9081 0.999 + . logic_name=eponine scaffold_706 ensembl protein_coding_gene 542 1305 . + . ID=Phyra86435;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_706000001;logic_name=jgi_phyra1 scaffold_706 ensembl transcript 542 1305 . + . ID=Phyra86435;Parent=Phyra86435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_706 . CDS 542 959 . + 0 ID=Phyra86435;Parent=Phyra86435;rank=1 scaffold_706 . exon 542 959 . + . ID=Phyra86435.1;Parent=Phyra86435;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_706 . CDS 1032 1099 . + 0 ID=Phyra86435;Parent=Phyra86435;rank=2 scaffold_706 . exon 1032 1099 . + . ID=Phyra86435.2;Parent=Phyra86435;constitutive=1;ensembl_phase=1;rank=2 scaffold_706 . CDS 1168 1305 . + 0 ID=Phyra86435;Parent=Phyra86435;rank=3 scaffold_706 . exon 1168 1305 . + . ID=Phyra86435.3;Parent=Phyra86435;constitutive=1;rank=3 scaffold_706 ensembl protein_coding_gene 7328 9051 . + . ID=Phyra86436;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_706000002;logic_name=jgi_phyra1 scaffold_706 ensembl transcript 7328 9051 . + . ID=Phyra86436;Parent=Phyra86436;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_706 . CDS 7328 7555 . + 0 ID=Phyra86436;Parent=Phyra86436;rank=1 scaffold_706 . exon 7328 7555 . + . ID=Phyra86436.1;Parent=Phyra86436;constitutive=1;rank=1 scaffold_706 . CDS 7606 8060 . + 0 ID=Phyra86436;Parent=Phyra86436;rank=2 scaffold_706 . exon 7606 8060 . + . ID=Phyra86436.2;Parent=Phyra86436;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_706 . CDS 8252 8309 . + 0 ID=Phyra86436;Parent=Phyra86436;rank=3 scaffold_706 . exon 8252 8309 . + . ID=Phyra86436.3;Parent=Phyra86436;constitutive=1;ensembl_phase=2;rank=3 scaffold_706 . CDS 8385 8697 . + 0 ID=Phyra86436;Parent=Phyra86436;rank=4 scaffold_706 . exon 8385 8697 . + . ID=Phyra86436.4;Parent=Phyra86436;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_706 . CDS 8918 9051 . + 0 ID=Phyra86436;Parent=Phyra86436;rank=5 scaffold_706 . exon 8918 9051 . + . ID=Phyra86436.5;Parent=Phyra86436;constitutive=1;ensembl_phase=1;rank=5 ##gff-version 3 ##sequence-region scaffold_635 1 9369 scaffold_635 . repeat_region 904 953 . ? . description=dust scaffold_635 . repeat_region 2401 2409 . ? . description=dust scaffold_635 . repeat_region 2554 4971 . ? . description=dust scaffold_635 . biological_region 5731 5736 0.999 - . logic_name=eponine scaffold_635 . repeat_region 6137 6762 . ? . description=dust scaffold_635 ensembl protein_coding_gene 5147 6136 . + . ID=Phyra51928;biotype=protein_coding;external_name=gwEuk.635.5.1;logic_name=jgi_phyra1 scaffold_635 ensembl transcript 5147 6136 . + . ID=Phyra51928;Parent=Phyra51928;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_635 . CDS 5147 6136 . + 0 ID=Phyra51928;Parent=Phyra51928;rank=1 scaffold_635 . exon 5147 6136 . + . ID=Phyra51928.1;Parent=Phyra51928;constitutive=1;rank=1 scaffold_635 ensembl protein_coding_gene 7646 9321 . - . ID=Phyra86355;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_635000002;logic_name=jgi_phyra1 scaffold_635 ensembl transcript 7646 9321 . - . ID=Phyra86355;Parent=Phyra86355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_635 . CDS 7646 7813 . - 0 ID=Phyra86355;Parent=Phyra86355;rank=3 scaffold_635 . exon 7646 7813 . - . ID=Phyra86355.3;Parent=Phyra86355;constitutive=1;rank=3 scaffold_635 . CDS 7906 8264 . - 0 ID=Phyra86355;Parent=Phyra86355;rank=2 scaffold_635 . exon 7906 8264 . - . ID=Phyra86355.2;Parent=Phyra86355;constitutive=1;ensembl_phase=1;rank=2 scaffold_635 . CDS 8598 9321 . - 0 ID=Phyra86355;Parent=Phyra86355;rank=1 scaffold_635 . exon 8598 9321 . - . ID=Phyra86355.1;Parent=Phyra86355;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_630 1 9373 scaffold_630 . repeat_region 233 1150 . - . description=GypsyPi-1c_I-int scaffold_630 . repeat_region 1151 6580 . ? . description=dust scaffold_630 . repeat_region 8441 8472 . ? . description=trf scaffold_630 . repeat_region 8447 8472 . ? . description=trf scaffold_630 . repeat_region 8450 8475 . ? . description=trf scaffold_630 . repeat_region 8450 8481 . ? . description=dust scaffold_630 ensembl protein_coding_gene 7657 8061 . - . ID=Phyra86343;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_630000001;logic_name=jgi_phyra1 scaffold_630 ensembl transcript 7657 8061 . - . ID=Phyra86343;Parent=Phyra86343;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_630 . CDS 7657 8061 . - 0 ID=Phyra86343;Parent=Phyra86343;rank=1 scaffold_630 . exon 7657 8061 . - . ID=Phyra86343.1;Parent=Phyra86343;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_628 1 9389 scaffold_628 . biological_region 2216 2217 0.999 - . logic_name=eponine scaffold_628 . biological_region 6855 6859 0.999 - . logic_name=eponine scaffold_628 . biological_region 7548 7551 0.999 - . logic_name=eponine scaffold_628 . repeat_region 9179 9186 . ? . description=dust scaffold_628 ensembl protein_coding_gene 6853 7297 . - . ID=Phyra51821;biotype=protein_coding;external_name=gwEuk.628.2.1;logic_name=jgi_phyra1 scaffold_628 ensembl transcript 6853 7297 . - . ID=Phyra51821;Parent=Phyra51821;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_628 . CDS 6853 7096 . - 0 ID=Phyra51821;Parent=Phyra51821;rank=2 scaffold_628 . exon 6853 7096 . - . ID=Phyra51821.2;Parent=Phyra51821;constitutive=1;ensembl_phase=2;rank=2 scaffold_628 . CDS 7158 7297 . - 0 ID=Phyra51821;Parent=Phyra51821;rank=1 scaffold_628 . exon 7158 7297 . - . ID=Phyra51821.1;Parent=Phyra51821;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_628 ensembl protein_coding_gene 2342 2806 . + . ID=Phyra86341;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_628000001;logic_name=jgi_phyra1 scaffold_628 ensembl transcript 2342 2806 . + . ID=Phyra86341;Parent=Phyra86341;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_628 . CDS 2342 2806 . + 0 ID=Phyra86341;Parent=Phyra86341;rank=1 scaffold_628 . exon 2342 2806 . + . ID=Phyra86341.1;Parent=Phyra86341;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_626 1 9404 scaffold_626 . repeat_region 160 167 . ? . description=dust scaffold_626 . repeat_region 1073 6972 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_625 1 9408 scaffold_625 . biological_region 1354 1356 0.999 + . logic_name=eponine scaffold_625 . biological_region 1435 1438 0.999 - . logic_name=eponine scaffold_625 . biological_region 1674 1677 0.999 + . logic_name=eponine scaffold_625 . biological_region 2147 2149 0.999 - . logic_name=eponine scaffold_625 . biological_region 2246 2251 0.999 - . logic_name=eponine scaffold_625 . biological_region 2286 2292 0.999 + . logic_name=eponine scaffold_625 . biological_region 2301 2308 0.999 + . logic_name=eponine scaffold_625 . biological_region 2528 2532 0.999 - . logic_name=eponine scaffold_625 . biological_region 2912 2916 0.999 + . logic_name=eponine scaffold_625 . biological_region 2996 3000 0.999 - . logic_name=eponine scaffold_625 . biological_region 4003 4010 0.999 + . logic_name=eponine scaffold_625 . repeat_region 4502 4549 . ? . description=trf scaffold_625 . repeat_region 5006 5042 . ? . description=trf scaffold_625 . biological_region 5900 5904 0.999 - . logic_name=eponine scaffold_625 . biological_region 5955 5959 0.999 + . logic_name=eponine scaffold_625 . biological_region 5980 5984 0.999 + . logic_name=eponine scaffold_625 . repeat_region 6833 6842 . ? . description=dust scaffold_625 . biological_region 6864 6869 0.999 + . logic_name=eponine scaffold_625 . biological_region 8859 8864 0.999 - . logic_name=eponine scaffold_625 . repeat_region 8885 8894 . ? . description=dust scaffold_625 ensembl protein_coding_gene 2456 6574 . + . ID=Phyra86338;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_625000001;logic_name=jgi_phyra1 scaffold_625 ensembl transcript 2456 6574 . + . ID=Phyra86338;Parent=Phyra86338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_625 . CDS 2456 6574 . + 0 ID=Phyra86338;Parent=Phyra86338;rank=1 scaffold_625 . exon 2456 6574 . + . ID=Phyra86338.1;Parent=Phyra86338;constitutive=1;rank=1 scaffold_625 ensembl protein_coding_gene 6874 8199 . - . ID=Phyra86339;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_625000002;logic_name=jgi_phyra1 scaffold_625 ensembl transcript 6874 8199 . - . ID=Phyra86339;Parent=Phyra86339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_625 . CDS 6874 8199 . - 0 ID=Phyra86339;Parent=Phyra86339;rank=1 scaffold_625 . exon 6874 8199 . - . ID=Phyra86339.1;Parent=Phyra86339;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_627 1 9420 scaffold_627 . repeat_region 1711 5388 . ? . description=dust scaffold_627 . repeat_region 5389 5819 . ? . description=trf scaffold_627 . repeat_region 6268 7328 . ? . description=dust scaffold_627 . repeat_region 7794 8099 . + . description=GypsyPi-1c_LTR scaffold_627 . repeat_region 8100 9358 . + . description=GypsyPi-1c_I-int scaffold_627 . biological_region 9026 9031 0.999 + . logic_name=eponine scaffold_627 ensembl protein_coding_gene 8126 8595 . + . ID=Phyra86340;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_627000001;logic_name=jgi_phyra1 scaffold_627 ensembl transcript 8126 8595 . + . ID=Phyra86340;Parent=Phyra86340;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_627 . CDS 8126 8196 . + 0 ID=Phyra86340;Parent=Phyra86340;rank=1 scaffold_627 . exon 8126 8196 . + . ID=Phyra86340.1;Parent=Phyra86340;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_627 . CDS 8226 8595 . + 0 ID=Phyra86340;Parent=Phyra86340;rank=2 scaffold_627 . exon 8226 8595 . + . ID=Phyra86340.2;Parent=Phyra86340;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_629 1 9423 scaffold_629 . biological_region 1489 1492 0.999 + . logic_name=eponine scaffold_629 . biological_region 1576 1580 0.999 - . logic_name=eponine scaffold_629 . repeat_region 1790 1839 . ? . description=dust scaffold_629 . repeat_region 2784 7592 . ? . description=dust scaffold_629 . biological_region 8772 8775 0.999 + . logic_name=eponine scaffold_629 ensembl protein_coding_gene 8820 9134 . + . ID=Phyra51826;biotype=protein_coding;external_name=gwEuk.629.2.1;logic_name=jgi_phyra1 scaffold_629 ensembl transcript 8820 9134 . + . ID=Phyra51826;Parent=Phyra51826;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_629 . CDS 8820 9134 . + 0 ID=Phyra51826;Parent=Phyra51826;rank=1 scaffold_629 . exon 8820 9134 . + . ID=Phyra51826.1;Parent=Phyra51826;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_705 1 9430 scaffold_705 . repeat_region 2666 2725 . ? . description=dust scaffold_705 . repeat_region 3976 7627 . ? . description=dust scaffold_705 ensembl protein_coding_gene 741 2817 . - . ID=Phyra86434;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_705000001;logic_name=jgi_phyra1 scaffold_705 ensembl transcript 741 2817 . - . ID=Phyra86434;Parent=Phyra86434;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_705 . CDS 741 2576 . - 0 ID=Phyra86434;Parent=Phyra86434;rank=2 scaffold_705 . exon 741 2576 . - . ID=Phyra86434.2;Parent=Phyra86434;constitutive=1;rank=2 scaffold_705 . CDS 2728 2817 . - 0 ID=Phyra86434;Parent=Phyra86434;rank=1 scaffold_705 . exon 2728 2817 . - . ID=Phyra86434.1;Parent=Phyra86434;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_604 1 9432 scaffold_604 . repeat_region 3856 3863 . ? . description=dust scaffold_604 . repeat_region 4166 8515 . ? . description=dust scaffold_604 ensembl protein_coding_gene 657 2384 . - . ID=Phyra86297;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_604000001;logic_name=jgi_phyra1 scaffold_604 ensembl transcript 657 2384 . - . ID=Phyra86297;Parent=Phyra86297;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_604 . CDS 657 2384 . - 0 ID=Phyra86297;Parent=Phyra86297;rank=1 scaffold_604 . exon 657 2384 . - . ID=Phyra86297.1;Parent=Phyra86297;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_620 1 9473 scaffold_620 . repeat_region 2058 2123 . ? . description=trf scaffold_620 . repeat_region 2369 3963 . ? . description=dust scaffold_620 . repeat_region 5493 5500 . ? . description=dust scaffold_620 . repeat_region 7072 7168 . ? . description=dust scaffold_620 . repeat_region 7074 7167 . ? . description=trf scaffold_620 . repeat_region 7238 7295 . ? . description=trf scaffold_620 . repeat_region 7238 7295 . ? . description=trf scaffold_620 ensembl protein_coding_gene 5785 7600 . - . ID=Phyra51813;biotype=protein_coding;external_name=gwEuk.620.4.1;logic_name=jgi_phyra1 scaffold_620 ensembl transcript 5785 7600 . - . ID=Phyra51813;Parent=Phyra51813;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_620 . CDS 5785 5920 . - 0 ID=Phyra51813;Parent=Phyra51813;rank=6 scaffold_620 . exon 5785 5920 . - . ID=Phyra51813.6;Parent=Phyra51813;constitutive=1;ensembl_phase=2;rank=6 scaffold_620 . CDS 6050 6127 . - 0 ID=Phyra51813;Parent=Phyra51813;rank=5 scaffold_620 . exon 6050 6127 . - . ID=Phyra51813.5;Parent=Phyra51813;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_620 . CDS 6202 6609 . - 0 ID=Phyra51813;Parent=Phyra51813;rank=4 scaffold_620 . exon 6202 6609 . - . ID=Phyra51813.4;Parent=Phyra51813;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_620 . CDS 6687 7069 . - 0 ID=Phyra51813;Parent=Phyra51813;rank=3 scaffold_620 . exon 6687 7069 . - . ID=Phyra51813.3;Parent=Phyra51813;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_620 . CDS 7343 7465 . - 0 ID=Phyra51813;Parent=Phyra51813;rank=2 scaffold_620 . exon 7343 7465 . - . ID=Phyra51813.2;Parent=Phyra51813;constitutive=1;rank=2 scaffold_620 . CDS 7532 7600 . - 0 ID=Phyra51813;Parent=Phyra51813;rank=1 scaffold_620 . exon 7532 7600 . - . ID=Phyra51813.1;Parent=Phyra51813;constitutive=1;rank=1 scaffold_620 ensembl protein_coding_gene 4 1671 . - . ID=Phyra86331;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_620000001;logic_name=jgi_phyra1 scaffold_620 ensembl transcript 4 1671 . - . ID=Phyra86331;Parent=Phyra86331;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_620 . CDS 4 1671 . - 0 ID=Phyra86331;Parent=Phyra86331;rank=1 scaffold_620 . exon 4 1671 . - . ID=Phyra86331.1;Parent=Phyra86331;constitutive=1;rank=1 scaffold_620 ensembl protein_coding_gene 4129 5379 . - . ID=Phyra86332;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_620000002;logic_name=jgi_phyra1 scaffold_620 ensembl transcript 4129 5379 . - . ID=Phyra86332;Parent=Phyra86332;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_620 . CDS 4129 4746 . - 0 ID=Phyra86332;Parent=Phyra86332;rank=3 scaffold_620 . exon 4129 4746 . - . ID=Phyra86332.3;Parent=Phyra86332;constitutive=1;rank=3 scaffold_620 . CDS 4819 4962 . - 0 ID=Phyra86332;Parent=Phyra86332;rank=2 scaffold_620 . exon 4819 4962 . - . ID=Phyra86332.2;Parent=Phyra86332;constitutive=1;rank=2 scaffold_620 . CDS 5122 5379 . - 0 ID=Phyra86332;Parent=Phyra86332;rank=1 scaffold_620 . exon 5122 5379 . - . ID=Phyra86332.1;Parent=Phyra86332;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_621 1 9477 scaffold_621 . biological_region 1071 1075 0.999 + . logic_name=eponine scaffold_621 . repeat_region 1289 4920 . ? . description=dust scaffold_621 . biological_region 7248 7249 0.999 + . logic_name=eponine scaffold_621 . biological_region 7608 7610 0.999 + . logic_name=eponine scaffold_621 . biological_region 8157 8160 0.999 - . logic_name=eponine scaffold_621 . biological_region 8212 8217 0.999 + . logic_name=eponine scaffold_621 ensembl protein_coding_gene 5786 9140 . - . ID=Phyra86334;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_621000001;logic_name=jgi_phyra1 scaffold_621 ensembl transcript 5786 9140 . - . ID=Phyra86334;Parent=Phyra86334;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_621 . CDS 5786 7911 . - 0 ID=Phyra86334;Parent=Phyra86334;rank=3 scaffold_621 . exon 5786 7911 . - . ID=Phyra86334.3;Parent=Phyra86334;constitutive=1;ensembl_phase=1;rank=3 scaffold_621 . CDS 7979 8978 . - 0 ID=Phyra86334;Parent=Phyra86334;rank=2 scaffold_621 . exon 7979 8978 . - . ID=Phyra86334.2;Parent=Phyra86334;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_621 . CDS 9069 9140 . - 0 ID=Phyra86334;Parent=Phyra86334;rank=1 scaffold_621 . exon 9069 9140 . - . ID=Phyra86334.1;Parent=Phyra86334;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_644 1 9479 scaffold_644 . biological_region 212 214 0.999 + . logic_name=eponine scaffold_644 . biological_region 842 843 0.999 - . logic_name=eponine scaffold_644 . biological_region 856 859 0.999 + . logic_name=eponine scaffold_644 . biological_region 1085 1088 0.999 + . logic_name=eponine scaffold_644 . repeat_region 3829 3966 . ? . description=dust scaffold_644 . repeat_region 4815 7457 . ? . description=dust scaffold_644 . repeat_region 7757 7767 . ? . description=dust scaffold_644 . repeat_region 8322 9427 . + . description=Gypsy-1-I_PI-int scaffold_644 ensembl protein_coding_gene 82 4536 . - . ID=Phyra86364;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_644000001;logic_name=jgi_phyra1 scaffold_644 ensembl transcript 82 4536 . - . ID=Phyra86364;Parent=Phyra86364;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_644 . CDS 82 3723 . - 0 ID=Phyra86364;Parent=Phyra86364;rank=3 scaffold_644 . exon 82 3723 . - . ID=Phyra86364.3;Parent=Phyra86364;constitutive=1;rank=3 scaffold_644 . CDS 3983 4425 . - 0 ID=Phyra86364;Parent=Phyra86364;rank=2 scaffold_644 . exon 3983 4425 . - . ID=Phyra86364.2;Parent=Phyra86364;constitutive=1;ensembl_phase=1;rank=2 scaffold_644 . CDS 4467 4536 . - 0 ID=Phyra86364;Parent=Phyra86364;rank=1 scaffold_644 . exon 4467 4536 . - . ID=Phyra86364.1;Parent=Phyra86364;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_624 1 9480 scaffold_624 . repeat_region 1235 1244 . ? . description=dust scaffold_624 . repeat_region 1939 1988 . ? . description=dust scaffold_624 . repeat_region 2302 2309 . ? . description=dust scaffold_624 . repeat_region 2322 2358 . ? . description=trf scaffold_624 . repeat_region 3907 7571 . ? . description=dust scaffold_624 ensembl protein_coding_gene 8061 9190 . - . ID=Phyra86337;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_624000001;logic_name=jgi_phyra1 scaffold_624 ensembl transcript 8061 9190 . - . ID=Phyra86337;Parent=Phyra86337;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_624 . CDS 8061 8173 . - 0 ID=Phyra86337;Parent=Phyra86337;rank=2 scaffold_624 . exon 8061 8173 . - . ID=Phyra86337.2;Parent=Phyra86337;constitutive=1;ensembl_phase=1;rank=2 scaffold_624 . CDS 8194 9190 . - 0 ID=Phyra86337;Parent=Phyra86337;rank=1 scaffold_624 . exon 8194 9190 . - . ID=Phyra86337.1;Parent=Phyra86337;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_616 1 9495 scaffold_616 ensembl protein_coding_gene 4428 5932 . - . ID=Phyra72413;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_616000001;logic_name=jgi_phyra1 scaffold_616 ensembl transcript 4428 5932 . - . ID=Phyra72413;Parent=Phyra72413;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_616 . CDS 4428 4671 . - 0 ID=Phyra72413;Parent=Phyra72413;rank=4 scaffold_616 . exon 4428 4671 . - . ID=Phyra72413.4;Parent=Phyra72413;constitutive=1;ensembl_phase=2;rank=4 scaffold_616 . CDS 4745 5709 . - 0 ID=Phyra72413;Parent=Phyra72413;rank=3 scaffold_616 . exon 4745 5709 . - . ID=Phyra72413.3;Parent=Phyra72413;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_616 . CDS 5774 5865 . - 0 ID=Phyra72413;Parent=Phyra72413;rank=2 scaffold_616 . exon 5774 5865 . - . ID=Phyra72413.2;Parent=Phyra72413;constitutive=1;ensembl_phase=1;rank=2 scaffold_616 . CDS 5920 5932 . - 0 ID=Phyra72413;Parent=Phyra72413;rank=1 scaffold_616 . exon 5920 5932 . - . ID=Phyra72413.1;Parent=Phyra72413;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_616 ensembl protein_coding_gene 1 2025 . + . ID=Phyra86319;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_616000001;logic_name=jgi_phyra1 scaffold_616 ensembl transcript 1 2025 . + . ID=Phyra86319;Parent=Phyra86319;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_616 . CDS 1 2025 . + 0 ID=Phyra86319;Parent=Phyra86319;rank=1 scaffold_616 . exon 1 2025 . + . ID=Phyra86319.1;Parent=Phyra86319;constitutive=1;rank=1 scaffold_616 ensembl protein_coding_gene 3615 4203 . + . ID=Phyra86320;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_616000002;logic_name=jgi_phyra1 scaffold_616 ensembl transcript 3615 4203 . + . ID=Phyra86320;Parent=Phyra86320;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_616 . CDS 3615 3698 . + 0 ID=Phyra86320;Parent=Phyra86320;rank=1 scaffold_616 . exon 3615 3698 . + . ID=Phyra86320.1;Parent=Phyra86320;constitutive=1;rank=1 scaffold_616 . CDS 3720 3783 . + 0 ID=Phyra86320;Parent=Phyra86320;rank=2 scaffold_616 . exon 3720 3783 . + . ID=Phyra86320.2;Parent=Phyra86320;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_616 . CDS 3852 4070 . + 0 ID=Phyra86320;Parent=Phyra86320;rank=3 scaffold_616 . exon 3852 4070 . + . ID=Phyra86320.3;Parent=Phyra86320;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_616 . CDS 4124 4203 . + 0 ID=Phyra86320;Parent=Phyra86320;rank=4 scaffold_616 . exon 4124 4203 . + . ID=Phyra86320.4;Parent=Phyra86320;constitutive=1;ensembl_phase=1;rank=4 scaffold_616 ensembl protein_coding_gene 7133 9361 . + . ID=Phyra86322;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_616000004;logic_name=jgi_phyra1 scaffold_616 ensembl transcript 7133 9361 . + . ID=Phyra86322;Parent=Phyra86322;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_616 . CDS 7133 9361 . + 0 ID=Phyra86322;Parent=Phyra86322;rank=1 scaffold_616 . exon 7133 9361 . + . ID=Phyra86322.1;Parent=Phyra86322;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_617 1 9504 scaffold_617 . biological_region 774 776 0.999 - . logic_name=eponine scaffold_617 . biological_region 1509 1515 0.999 + . logic_name=eponine scaffold_617 . repeat_region 2817 3411 . ? . description=dust scaffold_617 . repeat_region 3657 5712 . - . description=GypsyPi-1c_I-int scaffold_617 . repeat_region 5721 5770 . ? . description=dust scaffold_617 . biological_region 6674 6678 0.999 - . logic_name=eponine scaffold_617 . repeat_region 7052 7803 . ? . description=dust scaffold_617 ensembl pseudogene 4625 4937 . - . ID=Phyra51668;biotype=pseudogene;external_name=gwEuk.617.1.1;logic_name=jgi_phyra1 scaffold_617 ensembl pseudogene 4625 4937 . - . ID=Phyra51668;Parent=Phyra51668;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_617 . exon 4625 4937 . - . ID=Phyra51668.1;Parent=Phyra51668;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_617 ensembl protein_coding_gene 138 629 . - . ID=Phyra86323;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_617000001;logic_name=jgi_phyra1 scaffold_617 ensembl transcript 138 629 . - . ID=Phyra86323;Parent=Phyra86323;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_617 . CDS 138 629 . - 0 ID=Phyra86323;Parent=Phyra86323;rank=1 scaffold_617 . exon 138 629 . - . ID=Phyra86323.1;Parent=Phyra86323;constitutive=1;rank=1 scaffold_617 ensembl protein_coding_gene 1458 2147 . + . ID=Phyra86324;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_617000002;logic_name=jgi_phyra1 scaffold_617 ensembl transcript 1458 2147 . + . ID=Phyra86324;Parent=Phyra86324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_617 . CDS 1458 2147 . + 0 ID=Phyra86324;Parent=Phyra86324;rank=1 scaffold_617 . exon 1458 2147 . + . ID=Phyra86324.1;Parent=Phyra86324;constitutive=1;rank=1 scaffold_617 ensembl protein_coding_gene 4936 5887 . - . ID=Phyra86325;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_617000003;logic_name=jgi_phyra1 scaffold_617 ensembl transcript 4936 5887 . - . ID=Phyra86325;Parent=Phyra86325;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_617 . CDS 4936 5553 . - 0 ID=Phyra86325;Parent=Phyra86325;rank=2 scaffold_617 . exon 4936 5553 . - . ID=Phyra86325.2;Parent=Phyra86325;constitutive=1;rank=2 scaffold_617 . CDS 5810 5887 . - 0 ID=Phyra86325;Parent=Phyra86325;rank=1 scaffold_617 . exon 5810 5887 . - . ID=Phyra86325.1;Parent=Phyra86325;constitutive=1;rank=1 scaffold_617 ensembl protein_coding_gene 8254 9372 . - . ID=Phyra86326;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_617000004;logic_name=jgi_phyra1 scaffold_617 ensembl transcript 8254 9372 . - . ID=Phyra86326;Parent=Phyra86326;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_617 . CDS 8254 8724 . - 0 ID=Phyra86326;Parent=Phyra86326;rank=2 scaffold_617 . exon 8254 8724 . - . ID=Phyra86326.2;Parent=Phyra86326;constitutive=1;rank=2 scaffold_617 . CDS 8851 9372 . - 0 ID=Phyra86326;Parent=Phyra86326;rank=1 scaffold_617 . exon 8851 9372 . - . ID=Phyra86326.1;Parent=Phyra86326;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_618 1 9507 scaffold_618 . repeat_region 1230 3443 . ? . description=dust scaffold_618 . biological_region 4727 4735 0.999 - . logic_name=eponine scaffold_618 . biological_region 4783 4788 0.999 + . logic_name=eponine scaffold_618 . biological_region 5389 5392 0.999 + . logic_name=eponine scaffold_618 . biological_region 6353 6355 0.999 - . logic_name=eponine scaffold_618 . biological_region 7349 7350 0.999 + . logic_name=eponine scaffold_618 . biological_region 7440 7444 0.999 + . logic_name=eponine scaffold_618 . biological_region 8104 8107 0.999 + . logic_name=eponine scaffold_618 . biological_region 8284 8287 0.999 - . logic_name=eponine scaffold_618 . biological_region 8427 8433 0.999 - . logic_name=eponine scaffold_618 . biological_region 8514 8516 0.999 + . logic_name=eponine scaffold_618 . biological_region 8634 8634 0.999 - . logic_name=eponine scaffold_618 ensembl protein_coding_gene 4212 5066 . - . ID=Phyra86327;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_618000001;logic_name=jgi_phyra1 scaffold_618 ensembl transcript 4212 5066 . - . ID=Phyra86327;Parent=Phyra86327;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_618 . CDS 4212 5066 . - 0 ID=Phyra86327;Parent=Phyra86327;rank=1 scaffold_618 . exon 4212 5066 . - . ID=Phyra86327.1;Parent=Phyra86327;constitutive=1;rank=1 scaffold_618 ensembl protein_coding_gene 5476 6520 . + . ID=Phyra86328;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_618000002;logic_name=jgi_phyra1 scaffold_618 ensembl transcript 5476 6520 . + . ID=Phyra86328;Parent=Phyra86328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_618 . CDS 5476 5850 . + 0 ID=Phyra86328;Parent=Phyra86328;rank=1 scaffold_618 . exon 5476 5850 . + . ID=Phyra86328.1;Parent=Phyra86328;constitutive=1;rank=1 scaffold_618 . CDS 5927 6520 . + 0 ID=Phyra86328;Parent=Phyra86328;rank=2 scaffold_618 . exon 5927 6520 . + . ID=Phyra86328.2;Parent=Phyra86328;constitutive=1;rank=2 scaffold_618 ensembl protein_coding_gene 6815 9033 . - . ID=Phyra86329;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_618000003;logic_name=jgi_phyra1 scaffold_618 ensembl transcript 6815 9033 . - . ID=Phyra86329;Parent=Phyra86329;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_618 . CDS 6815 6907 . - 0 ID=Phyra86329;Parent=Phyra86329;rank=4 scaffold_618 . exon 6815 6907 . - . ID=Phyra86329.4;Parent=Phyra86329;constitutive=1;rank=4 scaffold_618 . CDS 6983 8805 . - 0 ID=Phyra86329;Parent=Phyra86329;rank=3 scaffold_618 . exon 6983 8805 . - . ID=Phyra86329.3;Parent=Phyra86329;constitutive=1;ensembl_phase=1;rank=3 scaffold_618 . CDS 8866 8931 . - 0 ID=Phyra86329;Parent=Phyra86329;rank=2 scaffold_618 . exon 8866 8931 . - . ID=Phyra86329.2;Parent=Phyra86329;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_618 . CDS 8988 9033 . - 0 ID=Phyra86329;Parent=Phyra86329;rank=1 scaffold_618 . exon 8988 9033 . - . ID=Phyra86329.1;Parent=Phyra86329;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_622 1 9507 scaffold_622 . repeat_region 1770 5822 . ? . description=dust scaffold_622 . biological_region 6242 6247 0.999 + . logic_name=eponine scaffold_622 . repeat_region 6595 6661 . ? . description=trf scaffold_622 . repeat_region 6670 6719 . ? . description=dust scaffold_622 . biological_region 6938 6941 0.999 - . logic_name=eponine scaffold_622 . repeat_region 7993 8097 . ? . description=trf scaffold_622 . biological_region 8644 8645 0.999 + . logic_name=eponine scaffold_622 . repeat_region 8720 8767 . ? . description=trf scaffold_622 . repeat_region 8720 8767 . ? . description=dust scaffold_622 . repeat_region 8994 9042 . ? . description=trf scaffold_622 ensembl protein_coding_gene 6017 8737 . - . ID=Phyra86335;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_622000001;logic_name=jgi_phyra1 scaffold_622 ensembl transcript 6017 8737 . - . ID=Phyra86335;Parent=Phyra86335;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_622 . CDS 6017 6540 . - 0 ID=Phyra86335;Parent=Phyra86335;rank=4 scaffold_622 . exon 6017 6540 . - . ID=Phyra86335.4;Parent=Phyra86335;constitutive=1;ensembl_phase=1;rank=4 scaffold_622 . CDS 6825 7671 . - 0 ID=Phyra86335;Parent=Phyra86335;rank=3 scaffold_622 . exon 6825 7671 . - . ID=Phyra86335.3;Parent=Phyra86335;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_622 . CDS 7909 8170 . - 0 ID=Phyra86335;Parent=Phyra86335;rank=2 scaffold_622 . exon 7909 8170 . - . ID=Phyra86335.2;Parent=Phyra86335;constitutive=1;ensembl_phase=2;rank=2 scaffold_622 . CDS 8304 8737 . - 0 ID=Phyra86335;Parent=Phyra86335;rank=1 scaffold_622 . exon 8304 8737 . - . ID=Phyra86335.1;Parent=Phyra86335;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_653 1 9507 scaffold_653 . repeat_region 3967 3975 . ? . description=dust scaffold_653 . repeat_region 6039 6088 . ? . description=dust scaffold_653 . repeat_region 7032 8410 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_687 1 9518 scaffold_687 . biological_region 798 800 0.999 + . logic_name=eponine scaffold_687 . repeat_region 1516 2180 . ? . description=dust scaffold_687 . repeat_region 3742 7179 . ? . description=dust scaffold_687 . repeat_region 7899 7934 . ? . description=trf scaffold_687 . repeat_region 7960 8009 . ? . description=dust scaffold_687 ensembl protein_coding_gene 7367 7789 . + . ID=Phyra72424;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_687000001;logic_name=jgi_phyra1 scaffold_687 ensembl transcript 7367 7789 . + . ID=Phyra72424;Parent=Phyra72424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_687 . CDS 7367 7789 . + 0 ID=Phyra72424;Parent=Phyra72424;rank=1 scaffold_687 . exon 7367 7789 . + . ID=Phyra72424.1;Parent=Phyra72424;constitutive=1;rank=1 scaffold_687 ensembl protein_coding_gene 665 2786 . - . ID=Phyra86417;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_687000001;logic_name=jgi_phyra1 scaffold_687 ensembl transcript 665 2786 . - . ID=Phyra86417;Parent=Phyra86417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_687 . CDS 665 1384 . - 0 ID=Phyra86417;Parent=Phyra86417;rank=2 scaffold_687 . exon 665 1384 . - . ID=Phyra86417.2;Parent=Phyra86417;constitutive=1;rank=2 scaffold_687 . CDS 2205 2786 . - 0 ID=Phyra86417;Parent=Phyra86417;rank=1 scaffold_687 . exon 2205 2786 . - . ID=Phyra86417.1;Parent=Phyra86417;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_613 1 9525 scaffold_613 . repeat_region 1323 5327 . ? . description=dust scaffold_613 . repeat_region 7350 7361 . ? . description=dust scaffold_613 . repeat_region 8507 8522 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_638 1 9530 scaffold_638 . repeat_region 1827 6839 . ? . description=dust scaffold_638 ensembl protein_coding_gene 455 1652 . + . ID=Phyra86358;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_638000001;logic_name=jgi_phyra1 scaffold_638 ensembl transcript 455 1652 . + . ID=Phyra86358;Parent=Phyra86358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_638 . CDS 455 477 . + 0 ID=Phyra86358;Parent=Phyra86358;rank=1 scaffold_638 . exon 455 477 . + . ID=Phyra86358.1;Parent=Phyra86358;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_638 . CDS 600 1504 . + 0 ID=Phyra86358;Parent=Phyra86358;rank=2 scaffold_638 . exon 600 1504 . + . ID=Phyra86358.2;Parent=Phyra86358;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_638 . CDS 1639 1652 . + 0 ID=Phyra86358;Parent=Phyra86358;rank=3 scaffold_638 . exon 1639 1652 . + . ID=Phyra86358.3;Parent=Phyra86358;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_623 1 9532 scaffold_623 . biological_region 1835 1837 0.999 + . logic_name=eponine scaffold_623 . repeat_region 1951 2000 . ? . description=dust scaffold_623 . repeat_region 3111 3138 . ? . description=trf scaffold_623 . repeat_region 3222 3271 . ? . description=dust scaffold_623 . repeat_region 4488 8025 . ? . description=dust scaffold_623 ensembl protein_coding_gene 16 732 . - . ID=Phyra86336;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_623000001;logic_name=jgi_phyra1 scaffold_623 ensembl transcript 16 732 . - . ID=Phyra86336;Parent=Phyra86336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_623 . CDS 16 732 . - 0 ID=Phyra86336;Parent=Phyra86336;rank=1 scaffold_623 . exon 16 732 . - . ID=Phyra86336.1;Parent=Phyra86336;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_615 1 9540 scaffold_615 . biological_region 2742 2743 0.999 - . logic_name=eponine scaffold_615 . biological_region 2979 2981 0.999 + . logic_name=eponine scaffold_615 . biological_region 3290 3297 0.999 - . logic_name=eponine scaffold_615 . biological_region 3347 3355 0.999 + . logic_name=eponine scaffold_615 . biological_region 3420 3423 0.999 - . logic_name=eponine scaffold_615 . biological_region 3924 3927 0.999 + . logic_name=eponine scaffold_615 . biological_region 4112 4118 0.999 + . logic_name=eponine scaffold_615 . repeat_region 4484 4497 . ? . description=dust scaffold_615 . repeat_region 5166 8536 . ? . description=dust scaffold_615 ensembl protein_coding_gene 682 1773 . - . ID=Phyra86316;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_615000001;logic_name=jgi_phyra1 scaffold_615 ensembl transcript 682 1773 . - . ID=Phyra86316;Parent=Phyra86316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_615 . CDS 682 1332 . - 0 ID=Phyra86316;Parent=Phyra86316;rank=2 scaffold_615 . exon 682 1332 . - . ID=Phyra86316.2;Parent=Phyra86316;constitutive=1;rank=2 scaffold_615 . CDS 1423 1773 . - 0 ID=Phyra86316;Parent=Phyra86316;rank=1 scaffold_615 . exon 1423 1773 . - . ID=Phyra86316.1;Parent=Phyra86316;constitutive=1;rank=1 scaffold_615 ensembl protein_coding_gene 3827 4477 . + . ID=Phyra86317;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_615000002;logic_name=jgi_phyra1 scaffold_615 ensembl transcript 3827 4477 . + . ID=Phyra86317;Parent=Phyra86317;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_615 . CDS 3827 4477 . + 0 ID=Phyra86317;Parent=Phyra86317;rank=1 scaffold_615 . exon 3827 4477 . + . ID=Phyra86317.1;Parent=Phyra86317;constitutive=1;rank=1 scaffold_615 ensembl protein_coding_gene 5101 9535 . - . ID=Phyra86318;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_615000003;logic_name=jgi_phyra1 scaffold_615 ensembl transcript 5101 9535 . - . ID=Phyra86318;Parent=Phyra86318;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_615 . CDS 5101 5110 . - 0 ID=Phyra86318;Parent=Phyra86318;rank=4 scaffold_615 . exon 5101 5110 . - . ID=Phyra86318.4;Parent=Phyra86318;constitutive=1;ensembl_phase=2;rank=4 scaffold_615 . CDS 8574 8653 . - 0 ID=Phyra86318;Parent=Phyra86318;rank=3 scaffold_615 . exon 8574 8653 . - . ID=Phyra86318.3;Parent=Phyra86318;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_615 . CDS 8729 8991 . - 0 ID=Phyra86318;Parent=Phyra86318;rank=2 scaffold_615 . exon 8729 8991 . - . ID=Phyra86318.2;Parent=Phyra86318;constitutive=1;ensembl_phase=1;rank=2 scaffold_615 . CDS 9022 9535 . - 0 ID=Phyra86318;Parent=Phyra86318;rank=1 scaffold_615 . exon 9022 9535 . - . ID=Phyra86318.1;Parent=Phyra86318;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_611 1 9545 scaffold_611 . repeat_region 4276 7261 . ? . description=dust scaffold_611 ensembl protein_coding_gene 7262 9477 . + . ID=Phyra86312;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_611000001;logic_name=jgi_phyra1 scaffold_611 ensembl transcript 7262 9477 . + . ID=Phyra86312;Parent=Phyra86312;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_611 . CDS 7262 9477 . + 0 ID=Phyra86312;Parent=Phyra86312;rank=1 scaffold_611 . exon 7262 9477 . + . ID=Phyra86312.1;Parent=Phyra86312;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_619 1 9547 scaffold_619 . repeat_region 1202 1229 . ? . description=trf scaffold_619 . repeat_region 1612 1661 . ? . description=dust scaffold_619 . repeat_region 2888 3391 . ? . description=dust scaffold_619 . repeat_region 3392 4564 . + . description=GypsyPi-1c_I-int scaffold_619 . repeat_region 4567 5562 . ? . description=dust scaffold_619 . repeat_region 6014 6027 . ? . description=dust scaffold_619 . repeat_region 6275 6553 . - . description=GypsyPi-1c_I-int scaffold_619 . repeat_region 6806 9133 . - . description=GypsyPi-1c_I-int scaffold_619 ensembl protein_coding_gene 6995 7321 . - . ID=Phyra51671;biotype=protein_coding;external_name=gwEuk.619.2.1;logic_name=jgi_phyra1 scaffold_619 ensembl transcript 6995 7321 . - . ID=Phyra51671;Parent=Phyra51671;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_619 . CDS 6995 7321 . - 0 ID=Phyra51671;Parent=Phyra51671;rank=1 scaffold_619 . exon 6995 7321 . - . ID=Phyra51671.1;Parent=Phyra51671;constitutive=1;rank=1 scaffold_619 ensembl protein_coding_gene 8558 9457 . - . ID=Phyra86330;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_619000001;logic_name=jgi_phyra1 scaffold_619 ensembl transcript 8558 9457 . - . ID=Phyra86330;Parent=Phyra86330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_619 . CDS 8558 9457 . - 0 ID=Phyra86330;Parent=Phyra86330;rank=1 scaffold_619 . exon 8558 9457 . - . ID=Phyra86330.1;Parent=Phyra86330;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_641 1 9551 scaffold_641 . repeat_region 1205 1692 . ? . description=dust scaffold_641 . repeat_region 2716 2738 . ? . description=trf scaffold_641 . repeat_region 3096 3353 . ? . description=dust scaffold_641 . repeat_region 3665 3673 . ? . description=dust scaffold_641 ensembl protein_coding_gene 4723 6981 . - . ID=Phyra86359;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_641000001;logic_name=jgi_phyra1 scaffold_641 ensembl transcript 4723 6981 . - . ID=Phyra86359;Parent=Phyra86359;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_641 . CDS 4723 6981 . - 0 ID=Phyra86359;Parent=Phyra86359;rank=1 scaffold_641 . exon 4723 6981 . - . ID=Phyra86359.1;Parent=Phyra86359;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_608 1 9553 scaffold_608 . biological_region 498 501 0.999 - . logic_name=eponine scaffold_608 . biological_region 548 553 0.999 - . logic_name=eponine scaffold_608 . repeat_region 1294 1417 . ? . description=trf scaffold_608 . repeat_region 2167 6645 . ? . description=dust scaffold_608 ensembl protein_coding_gene 1987 2157 . + . ID=Phyra51601;biotype=protein_coding;external_name=gwEuk.608.1.1;logic_name=jgi_phyra1 scaffold_608 ensembl transcript 1987 2157 . + . ID=Phyra51601;Parent=Phyra51601;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_608 . CDS 1987 2157 . + 0 ID=Phyra51601;Parent=Phyra51601;rank=1 scaffold_608 . exon 1987 2157 . + . ID=Phyra51601.1;Parent=Phyra51601;constitutive=1;rank=1 scaffold_608 ensembl protein_coding_gene 373 1737 . - . ID=Phyra86308;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_608000001;logic_name=jgi_phyra1 scaffold_608 ensembl transcript 373 1737 . - . ID=Phyra86308;Parent=Phyra86308;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_608 . CDS 373 797 . - 0 ID=Phyra86308;Parent=Phyra86308;rank=2 scaffold_608 . exon 373 797 . - . ID=Phyra86308.2;Parent=Phyra86308;constitutive=1;ensembl_phase=1;rank=2 scaffold_608 . CDS 864 1737 . - 0 ID=Phyra86308;Parent=Phyra86308;rank=1 scaffold_608 . exon 864 1737 . - . ID=Phyra86308.1;Parent=Phyra86308;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_608 ensembl protein_coding_gene 7261 9330 . + . ID=Phyra86309;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_608000002;logic_name=jgi_phyra1 scaffold_608 ensembl transcript 7261 9330 . + . ID=Phyra86309;Parent=Phyra86309;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_608 . CDS 7261 9330 . + 0 ID=Phyra86309;Parent=Phyra86309;rank=1 scaffold_608 . exon 7261 9330 . + . ID=Phyra86309.1;Parent=Phyra86309;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_610 1 9555 scaffold_610 . biological_region 197 199 0.999 + . logic_name=eponine scaffold_610 . repeat_region 3723 7134 . ? . description=dust scaffold_610 . biological_region 8239 8242 0.999 + . logic_name=eponine scaffold_610 ensembl protein_coding_gene 8086 8463 . - . ID=Phyra86311;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_610000001;logic_name=jgi_phyra1 scaffold_610 ensembl transcript 8086 8463 . - . ID=Phyra86311;Parent=Phyra86311;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_610 . CDS 8086 8463 . - 0 ID=Phyra86311;Parent=Phyra86311;rank=1 scaffold_610 . exon 8086 8463 . - . ID=Phyra86311.1;Parent=Phyra86311;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_609 1 9560 scaffold_609 . repeat_region 1384 6200 . ? . description=dust scaffold_609 ensembl protein_coding_gene 8697 9203 . - . ID=Phyra51605;biotype=protein_coding;external_name=gwEuk.609.1.1;logic_name=jgi_phyra1 scaffold_609 ensembl transcript 8697 9203 . - . ID=Phyra51605;Parent=Phyra51605;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_609 . CDS 8697 8896 . - 0 ID=Phyra51605;Parent=Phyra51605;rank=2 scaffold_609 . exon 8697 8896 . - . ID=Phyra51605.2;Parent=Phyra51605;constitutive=1;ensembl_phase=1;rank=2 scaffold_609 . CDS 9074 9203 . - 0 ID=Phyra51605;Parent=Phyra51605;rank=1 scaffold_609 . exon 9074 9203 . - . ID=Phyra51605.1;Parent=Phyra51605;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_609 ensembl protein_coding_gene 141 6902 . + . ID=Phyra86310;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_609000001;logic_name=jgi_phyra1 scaffold_609 ensembl transcript 141 6902 . + . ID=Phyra86310;Parent=Phyra86310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_609 . CDS 141 1346 . + 0 ID=Phyra86310;Parent=Phyra86310;rank=1 scaffold_609 . exon 141 1346 . + . ID=Phyra86310.1;Parent=Phyra86310;constitutive=1;rank=1 scaffold_609 . CDS 6423 6432 . + 0 ID=Phyra86310;Parent=Phyra86310;rank=2 scaffold_609 . exon 6423 6432 . + . ID=Phyra86310.2;Parent=Phyra86310;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_609 . CDS 6649 6902 . + 0 ID=Phyra86310;Parent=Phyra86310;rank=3 scaffold_609 . exon 6649 6902 . + . ID=Phyra86310.3;Parent=Phyra86310;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_607 1 9588 scaffold_607 . repeat_region 1031 1040 . ? . description=dust scaffold_607 . repeat_region 2796 8764 . ? . description=dust scaffold_607 ensembl protein_coding_gene 598 1914 . - . ID=Phyra86306;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_607000001;logic_name=jgi_phyra1 scaffold_607 ensembl transcript 598 1914 . - . ID=Phyra86306;Parent=Phyra86306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_607 . CDS 598 1026 . - 0 ID=Phyra86306;Parent=Phyra86306;rank=2 scaffold_607 . exon 598 1026 . - . ID=Phyra86306.2;Parent=Phyra86306;constitutive=1;rank=2 scaffold_607 . CDS 1093 1914 . - 0 ID=Phyra86306;Parent=Phyra86306;rank=1 scaffold_607 . exon 1093 1914 . - . ID=Phyra86306.1;Parent=Phyra86306;constitutive=1;rank=1 scaffold_607 ensembl protein_coding_gene 8853 9569 . - . ID=Phyra86307;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_607000002;logic_name=jgi_phyra1 scaffold_607 ensembl transcript 8853 9569 . - . ID=Phyra86307;Parent=Phyra86307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_607 . CDS 8853 9473 . - 0 ID=Phyra86307;Parent=Phyra86307;rank=2 scaffold_607 . exon 8853 9473 . - . ID=Phyra86307.2;Parent=Phyra86307;constitutive=1;rank=2 scaffold_607 . CDS 9567 9569 . - 0 ID=Phyra86307;Parent=Phyra86307;rank=1 scaffold_607 . exon 9567 9569 . - . ID=Phyra86307.1;Parent=Phyra86307;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_605 1 9628 scaffold_605 . repeat_region 1098 1111 . ? . description=dust scaffold_605 . repeat_region 3229 3280 . ? . description=dust scaffold_605 . repeat_region 3638 3651 . ? . description=dust scaffold_605 . biological_region 4566 4570 0.999 + . logic_name=eponine scaffold_605 . repeat_region 5273 5281 . ? . description=dust scaffold_605 . repeat_region 8508 8515 . ? . description=dust scaffold_605 ensembl protein_coding_gene 1792 2622 . + . ID=Phyra86298;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_605000001;logic_name=jgi_phyra1 scaffold_605 ensembl transcript 1792 2622 . + . ID=Phyra86298;Parent=Phyra86298;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_605 . CDS 1792 2622 . + 0 ID=Phyra86298;Parent=Phyra86298;rank=1 scaffold_605 . exon 1792 2622 . + . ID=Phyra86298.1;Parent=Phyra86298;constitutive=1;rank=1 scaffold_605 ensembl protein_coding_gene 3774 4898 . + . ID=Phyra86299;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_605000002;logic_name=jgi_phyra1 scaffold_605 ensembl transcript 3774 4898 . + . ID=Phyra86299;Parent=Phyra86299;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_605 . CDS 3774 4898 . + 0 ID=Phyra86299;Parent=Phyra86299;rank=1 scaffold_605 . exon 3774 4898 . + . ID=Phyra86299.1;Parent=Phyra86299;constitutive=1;rank=1 scaffold_605 ensembl protein_coding_gene 6716 9564 . - . ID=Phyra86300;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_605000003;logic_name=jgi_phyra1 scaffold_605 ensembl transcript 6716 9564 . - . ID=Phyra86300;Parent=Phyra86300;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_605 . CDS 6716 7585 . - 0 ID=Phyra86300;Parent=Phyra86300;rank=5 scaffold_605 . exon 6716 7585 . - . ID=Phyra86300.5;Parent=Phyra86300;constitutive=1;rank=5 scaffold_605 . CDS 7968 8029 . - 0 ID=Phyra86300;Parent=Phyra86300;rank=4 scaffold_605 . exon 7968 8029 . - . ID=Phyra86300.4;Parent=Phyra86300;constitutive=1;ensembl_phase=1;rank=4 scaffold_605 . CDS 8071 8504 . - 0 ID=Phyra86300;Parent=Phyra86300;rank=3 scaffold_605 . exon 8071 8504 . - . ID=Phyra86300.3;Parent=Phyra86300;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_605 . CDS 8616 8840 . - 0 ID=Phyra86300;Parent=Phyra86300;rank=2 scaffold_605 . exon 8616 8840 . - . ID=Phyra86300.2;Parent=Phyra86300;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_605 . CDS 9008 9564 . - 0 ID=Phyra86300;Parent=Phyra86300;rank=1 scaffold_605 . exon 9008 9564 . - . ID=Phyra86300.1;Parent=Phyra86300;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_591 1 9651 scaffold_591 . repeat_region 267 279 . ? . description=dust scaffold_591 . biological_region 456 459 0.999 + . logic_name=eponine scaffold_591 . repeat_region 532 782 . - . description=GypsyPi-1c_I-int scaffold_591 . repeat_region 1100 3362 . - . description=GypsyPi-1c_I-int scaffold_591 . repeat_region 3756 3888 . ? . description=dust scaffold_591 . repeat_region 3986 4084 . - . description=GypsyPi-1c_I-int scaffold_591 . biological_region 5150 5151 0.999 - . logic_name=eponine scaffold_591 . repeat_region 5758 6960 . ? . description=dust scaffold_591 ensembl protein_coding_gene 1320 2147 . - . ID=Phyra72408;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_591000001;logic_name=jgi_phyra1 scaffold_591 ensembl transcript 1320 2147 . - . ID=Phyra72408;Parent=Phyra72408;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_591 . CDS 1320 2147 . - 0 ID=Phyra72408;Parent=Phyra72408;rank=1 scaffold_591 . exon 1320 2147 . - . ID=Phyra72408.1;Parent=Phyra72408;constitutive=1;rank=1 scaffold_591 ensembl protein_coding_gene 2260 3647 . - . ID=Phyra86286;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_591000002;logic_name=jgi_phyra1 scaffold_591 ensembl transcript 2260 3647 . - . ID=Phyra86286;Parent=Phyra86286;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_591 . CDS 2260 3647 . - 0 ID=Phyra86286;Parent=Phyra86286;rank=1 scaffold_591 . exon 2260 3647 . - . ID=Phyra86286.1;Parent=Phyra86286;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_606 1 9653 scaffold_606 . repeat_region 9 140 . ? . description=dust scaffold_606 . repeat_region 10 139 . ? . description=trf scaffold_606 . biological_region 5011 5015 0.999 - . logic_name=eponine scaffold_606 . biological_region 5387 5394 0.999 - . logic_name=eponine scaffold_606 . repeat_region 5600 5636 . ? . description=trf scaffold_606 . repeat_region 5645 7172 . ? . description=dust scaffold_606 . repeat_region 8380 8429 . ? . description=dust scaffold_606 . biological_region 9612 9617 0.999 - . logic_name=eponine scaffold_606 ensembl protein_coding_gene 102 1422 . + . ID=Phyra51599;biotype=protein_coding;external_name=gwEuk.606.13.1;logic_name=jgi_phyra1 scaffold_606 ensembl transcript 102 1422 . + . ID=Phyra51599;Parent=Phyra51599;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_606 . CDS 102 526 . + 0 ID=Phyra51599;Parent=Phyra51599;rank=1 scaffold_606 . exon 102 526 . + . ID=Phyra51599.1;Parent=Phyra51599;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_606 . CDS 604 1011 . + 0 ID=Phyra51599;Parent=Phyra51599;rank=2 scaffold_606 . exon 604 1011 . + . ID=Phyra51599.2;Parent=Phyra51599;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_606 . CDS 1086 1163 . + 0 ID=Phyra51599;Parent=Phyra51599;rank=3 scaffold_606 . exon 1086 1163 . + . ID=Phyra51599.3;Parent=Phyra51599;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_606 . CDS 1293 1422 . + 0 ID=Phyra51599;Parent=Phyra51599;rank=4 scaffold_606 . exon 1293 1422 . + . ID=Phyra51599.4;Parent=Phyra51599;constitutive=1;ensembl_phase=2;rank=4 scaffold_606 ensembl protein_coding_gene 4108 4911 . - . ID=Phyra72411;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_606000001;logic_name=jgi_phyra1 scaffold_606 ensembl transcript 4108 4911 . - . ID=Phyra72411;Parent=Phyra72411;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_606 . CDS 4108 4911 . - 0 ID=Phyra72411;Parent=Phyra72411;rank=1 scaffold_606 . exon 4108 4911 . - . ID=Phyra72411.1;Parent=Phyra72411;constitutive=1;rank=1 scaffold_606 ensembl protein_coding_gene 1741 2766 . - . ID=Phyra86302;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_606000002;logic_name=jgi_phyra1 scaffold_606 ensembl transcript 1741 2766 . - . ID=Phyra86302;Parent=Phyra86302;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_606 . CDS 1741 2766 . - 0 ID=Phyra86302;Parent=Phyra86302;rank=1 scaffold_606 . exon 1741 2766 . - . ID=Phyra86302.1;Parent=Phyra86302;constitutive=1;rank=1 scaffold_606 ensembl protein_coding_gene 2974 3872 . + . ID=Phyra86303;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_606000003;logic_name=jgi_phyra1 scaffold_606 ensembl transcript 2974 3872 . + . ID=Phyra86303;Parent=Phyra86303;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_606 . CDS 2974 3326 . + 0 ID=Phyra86303;Parent=Phyra86303;rank=1 scaffold_606 . exon 2974 3326 . + . ID=Phyra86303.1;Parent=Phyra86303;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_606 . CDS 3398 3484 . + 0 ID=Phyra86303;Parent=Phyra86303;rank=2 scaffold_606 . exon 3398 3484 . + . ID=Phyra86303.2;Parent=Phyra86303;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_606 . CDS 3542 3872 . + 0 ID=Phyra86303;Parent=Phyra86303;rank=3 scaffold_606 . exon 3542 3872 . + . ID=Phyra86303.3;Parent=Phyra86303;constitutive=1;ensembl_phase=2;rank=3 scaffold_606 ensembl protein_coding_gene 7280 9639 . - . ID=Phyra86305;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_606000005;logic_name=jgi_phyra1 scaffold_606 ensembl transcript 7280 9639 . - . ID=Phyra86305;Parent=Phyra86305;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_606 . CDS 7280 7323 . - 0 ID=Phyra86305;Parent=Phyra86305;rank=5 scaffold_606 . exon 7280 7323 . - . ID=Phyra86305.5;Parent=Phyra86305;constitutive=1;ensembl_phase=1;rank=5 scaffold_606 . CDS 7446 8367 . - 0 ID=Phyra86305;Parent=Phyra86305;rank=4 scaffold_606 . exon 7446 8367 . - . ID=Phyra86305.4;Parent=Phyra86305;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_606 . CDS 8437 9099 . - 0 ID=Phyra86305;Parent=Phyra86305;rank=3 scaffold_606 . exon 8437 9099 . - . ID=Phyra86305.3;Parent=Phyra86305;constitutive=1;rank=3 scaffold_606 . CDS 9179 9416 . - 0 ID=Phyra86305;Parent=Phyra86305;rank=2 scaffold_606 . exon 9179 9416 . - . ID=Phyra86305.2;Parent=Phyra86305;constitutive=1;ensembl_phase=2;rank=2 scaffold_606 . CDS 9482 9639 . - 0 ID=Phyra86305;Parent=Phyra86305;rank=1 scaffold_606 . exon 9482 9639 . - . ID=Phyra86305.1;Parent=Phyra86305;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_601 1 9686 scaffold_601 . repeat_region 821 828 . ? . description=dust scaffold_601 . repeat_region 2185 2714 . ? . description=dust scaffold_601 . repeat_region 2998 3017 . ? . description=trf scaffold_601 . repeat_region 4118 6622 . ? . description=dust scaffold_601 . repeat_region 6885 6911 . ? . description=trf scaffold_601 . biological_region 6961 6964 0.999 + . logic_name=eponine scaffold_601 . biological_region 6979 6984 0.999 - . logic_name=eponine scaffold_601 . biological_region 6986 6988 0.999 + . logic_name=eponine scaffold_601 . biological_region 7002 7012 0.999 + . logic_name=eponine scaffold_601 . biological_region 7026 7026 0.999 + . logic_name=eponine scaffold_601 . biological_region 7068 7069 0.999 - . logic_name=eponine scaffold_601 . repeat_region 7162 7203 . ? . description=trf scaffold_601 . biological_region 8265 8267 0.999 - . logic_name=eponine scaffold_601 ensembl protein_coding_gene 17 412 . - . ID=Phyra86290;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_601000001;logic_name=jgi_phyra1 scaffold_601 ensembl transcript 17 412 . - . ID=Phyra86290;Parent=Phyra86290;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_601 . CDS 17 412 . - 0 ID=Phyra86290;Parent=Phyra86290;rank=1 scaffold_601 . exon 17 412 . - . ID=Phyra86290.1;Parent=Phyra86290;constitutive=1;rank=1 scaffold_601 ensembl protein_coding_gene 1445 2758 . + . ID=Phyra86291;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_601000002;logic_name=jgi_phyra1 scaffold_601 ensembl transcript 1445 2758 . + . ID=Phyra86291;Parent=Phyra86291;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_601 . CDS 1445 2163 . + 0 ID=Phyra86291;Parent=Phyra86291;rank=1 scaffold_601 . exon 1445 2163 . + . ID=Phyra86291.1;Parent=Phyra86291;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_601 . CDS 2752 2758 . + 0 ID=Phyra86291;Parent=Phyra86291;rank=2 scaffold_601 . exon 2752 2758 . + . ID=Phyra86291.2;Parent=Phyra86291;constitutive=1;ensembl_phase=2;rank=2 scaffold_601 ensembl protein_coding_gene 7936 9570 . + . ID=Phyra86292;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_601000003;logic_name=jgi_phyra1 scaffold_601 ensembl transcript 7936 9570 . + . ID=Phyra86292;Parent=Phyra86292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_601 . CDS 7936 9570 . + 0 ID=Phyra86292;Parent=Phyra86292;rank=1 scaffold_601 . exon 7936 9570 . + . ID=Phyra86292.1;Parent=Phyra86292;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_602 1 9689 scaffold_602 . repeat_region 1 1175 . - . description=GypsyPi-1c_I-int scaffold_602 . biological_region 1707 1712 0.999 - . logic_name=eponine scaffold_602 . biological_region 1747 1748 0.999 + . logic_name=eponine scaffold_602 . biological_region 1784 1785 0.999 + . logic_name=eponine scaffold_602 . biological_region 1810 1814 0.999 - . logic_name=eponine scaffold_602 . biological_region 1861 1865 0.999 - . logic_name=eponine scaffold_602 . biological_region 3374 3380 0.999 - . logic_name=eponine scaffold_602 . repeat_region 3749 4377 . - . description=GypsyPi-1c_I-int scaffold_602 . repeat_region 4382 4683 . - . description=GypsyPi-1c_LTR scaffold_602 . repeat_region 5128 8997 . ? . description=dust scaffold_602 ensembl protein_coding_gene 125 3280 . - . ID=Phyra86293;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_602000001;logic_name=jgi_phyra1 scaffold_602 ensembl transcript 125 3280 . - . ID=Phyra86293;Parent=Phyra86293;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_602 . CDS 125 163 . - 0 ID=Phyra86293;Parent=Phyra86293;rank=5 scaffold_602 . exon 125 163 . - . ID=Phyra86293.5;Parent=Phyra86293;constitutive=1;rank=5 scaffold_602 . CDS 222 1894 . - 0 ID=Phyra86293;Parent=Phyra86293;rank=4 scaffold_602 . exon 222 1894 . - . ID=Phyra86293.4;Parent=Phyra86293;constitutive=1;ensembl_phase=1;rank=4 scaffold_602 . CDS 2126 2309 . - 0 ID=Phyra86293;Parent=Phyra86293;rank=3 scaffold_602 . exon 2126 2309 . - . ID=Phyra86293.3;Parent=Phyra86293;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_602 . CDS 2511 2654 . - 0 ID=Phyra86293;Parent=Phyra86293;rank=2 scaffold_602 . exon 2511 2654 . - . ID=Phyra86293.2;Parent=Phyra86293;constitutive=1;rank=2 scaffold_602 . CDS 2777 3280 . - 0 ID=Phyra86293;Parent=Phyra86293;rank=1 scaffold_602 . exon 2777 3280 . - . ID=Phyra86293.1;Parent=Phyra86293;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_600 1 9693 scaffold_600 . repeat_region 1 1227 . - . description=GypsyPi-1c_I-int scaffold_600 . repeat_region 836 1100 . ? . description=dust scaffold_600 . repeat_region 1228 1536 . - . description=GypsyPi-1c_LTR scaffold_600 . repeat_region 2231 2316 . ? . description=trf scaffold_600 . repeat_region 3487 8203 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_603 1 9695 scaffold_603 . repeat_region 10 1251 . + . description=GypsyPi-1c_I-int scaffold_603 . biological_region 877 880 0.999 - . logic_name=eponine scaffold_603 . repeat_region 1332 1381 . ? . description=dust scaffold_603 . biological_region 1430 1431 0.999 - . logic_name=eponine scaffold_603 . biological_region 1467 1470 0.999 - . logic_name=eponine scaffold_603 . biological_region 1544 1549 0.999 + . logic_name=eponine scaffold_603 . biological_region 1573 1574 0.999 + . logic_name=eponine scaffold_603 . repeat_region 1589 2307 . + . description=GypsyPi-1c_I-int scaffold_603 . biological_region 1688 1691 0.999 - . logic_name=eponine scaffold_603 . biological_region 2256 2262 0.999 - . logic_name=eponine scaffold_603 . biological_region 2569 2571 0.999 - . logic_name=eponine scaffold_603 . biological_region 2604 2609 0.999 - . logic_name=eponine scaffold_603 . biological_region 2623 2629 0.999 + . logic_name=eponine scaffold_603 . biological_region 3019 3024 0.999 + . logic_name=eponine scaffold_603 . repeat_region 3079 3103 . ? . description=trf scaffold_603 . repeat_region 3122 3723 . ? . description=dust scaffold_603 . repeat_region 4468 4497 . ? . description=trf scaffold_603 . repeat_region 5616 6318 . ? . description=dust scaffold_603 . biological_region 7197 7201 0.999 + . logic_name=eponine scaffold_603 . biological_region 7249 7252 0.999 + . logic_name=eponine scaffold_603 . biological_region 7313 7314 0.999 - . logic_name=eponine scaffold_603 . biological_region 7350 7354 0.999 + . logic_name=eponine scaffold_603 . repeat_region 7878 9205 . + . description=GypsyPi-1c_I-int scaffold_603 . biological_region 8367 8369 0.999 - . logic_name=eponine scaffold_603 ensembl protein_coding_gene 1850 2236 . + . ID=Phyra51585;biotype=protein_coding;external_name=gwEuk.603.1.1;logic_name=jgi_phyra1 scaffold_603 ensembl transcript 1850 2236 . + . ID=Phyra51585;Parent=Phyra51585;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_603 . CDS 1850 2236 . + 0 ID=Phyra51585;Parent=Phyra51585;rank=1 scaffold_603 . exon 1850 2236 . + . ID=Phyra51585.1;Parent=Phyra51585;constitutive=1;rank=1 scaffold_603 ensembl protein_coding_gene 1 1753 . + . ID=Phyra86294;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_603000001;logic_name=jgi_phyra1 scaffold_603 ensembl transcript 1 1753 . + . ID=Phyra86294;Parent=Phyra86294;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_603 . exon 1 595 . + . ID=Phyra86294.1;Parent=Phyra86294;constitutive=1;ensembl_phase=-1;rank=1 scaffold_603 . CDS 2 595 . + 0 ID=Phyra86294;Parent=Phyra86294;rank=1 scaffold_603 . CDS 746 1317 . + 0 ID=Phyra86294;Parent=Phyra86294;rank=2 scaffold_603 . exon 746 1317 . + . ID=Phyra86294.2;Parent=Phyra86294;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_603 . CDS 1492 1753 . + 0 ID=Phyra86294;Parent=Phyra86294;rank=3 scaffold_603 . exon 1492 1753 . + . ID=Phyra86294.3;Parent=Phyra86294;constitutive=1;ensembl_phase=2;rank=3 scaffold_603 ensembl protein_coding_gene 7600 8945 . + . ID=Phyra86296;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_603000003;logic_name=jgi_phyra1 scaffold_603 ensembl transcript 7600 8945 . + . ID=Phyra86296;Parent=Phyra86296;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_603 . CDS 7600 8905 . + 0 ID=Phyra86296;Parent=Phyra86296;rank=1 scaffold_603 . exon 7600 8905 . + . ID=Phyra86296.1;Parent=Phyra86296;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_603 . CDS 8932 8945 . + 0 ID=Phyra86296;Parent=Phyra86296;rank=2 scaffold_603 . exon 8932 8945 . + . ID=Phyra86296.2;Parent=Phyra86296;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_612 1 9711 scaffold_612 . repeat_region 1429 1452 . ? . description=trf scaffold_612 . repeat_region 1793 1857 . ? . description=dust scaffold_612 . biological_region 2649 2652 0.999 + . logic_name=eponine scaffold_612 . biological_region 2687 2694 0.999 - . logic_name=eponine scaffold_612 . repeat_region 3531 3585 . + . description=(TCCG)n scaffold_612 . repeat_region 3532 3575 . ? . description=dust scaffold_612 . repeat_region 3533 3575 . ? . description=trf scaffold_612 . biological_region 3599 3602 0.999 - . logic_name=eponine scaffold_612 . biological_region 3647 3647 0.999 - . logic_name=eponine scaffold_612 . repeat_region 3737 4435 . ? . description=dust scaffold_612 . repeat_region 5081 5509 . ? . description=trf scaffold_612 . repeat_region 5679 5721 . + . description=(TCCG)n scaffold_612 . repeat_region 5680 5718 . ? . description=dust scaffold_612 . repeat_region 5681 5711 . ? . description=trf scaffold_612 . biological_region 5735 5738 0.999 - . logic_name=eponine scaffold_612 . repeat_region 6438 7789 . ? . description=dust scaffold_612 . repeat_region 8096 8118 . ? . description=trf scaffold_612 . biological_region 8142 8145 0.999 - . logic_name=eponine scaffold_612 . repeat_region 9377 9415 . ? . description=dust scaffold_612 . repeat_region 9378 9408 . ? . description=trf scaffold_612 . biological_region 9432 9434 0.999 - . logic_name=eponine scaffold_612 . biological_region 9478 9481 0.999 - . logic_name=eponine scaffold_612 ensembl protein_coding_gene 4618 5061 . + . ID=Phyra72412;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_612000001;logic_name=jgi_phyra1 scaffold_612 ensembl transcript 4618 5061 . + . ID=Phyra72412;Parent=Phyra72412;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_612 . CDS 4618 5061 . + 0 ID=Phyra72412;Parent=Phyra72412;rank=1 scaffold_612 . exon 4618 5061 . + . ID=Phyra72412.1;Parent=Phyra72412;constitutive=1;rank=1 scaffold_612 ensembl protein_coding_gene 1523 2753 . - . ID=Phyra86313;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_612000001;logic_name=jgi_phyra1 scaffold_612 ensembl transcript 1523 2753 . - . ID=Phyra86313;Parent=Phyra86313;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_612 . CDS 1523 1563 . - 0 ID=Phyra86313;Parent=Phyra86313;rank=2 scaffold_612 . exon 1523 1563 . - . ID=Phyra86313.2;Parent=Phyra86313;constitutive=1;ensembl_phase=1;rank=2 scaffold_612 . CDS 1895 2753 . - 0 ID=Phyra86313;Parent=Phyra86313;rank=1 scaffold_612 . exon 1895 2753 . - . ID=Phyra86313.1;Parent=Phyra86313;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_612 ensembl protein_coding_gene 8513 8989 . + . ID=Phyra86315;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_612000003;logic_name=jgi_phyra1 scaffold_612 ensembl transcript 8513 8989 . + . ID=Phyra86315;Parent=Phyra86315;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_612 . CDS 8513 8989 . + 0 ID=Phyra86315;Parent=Phyra86315;rank=1 scaffold_612 . exon 8513 8989 . + . ID=Phyra86315.1;Parent=Phyra86315;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_597 1 9716 scaffold_597 . repeat_region 611 623 . ? . description=dust scaffold_597 . repeat_region 1494 2701 . ? . description=dust scaffold_597 . repeat_region 3773 3790 . ? . description=dust scaffold_597 . biological_region 3818 3823 0.999 + . logic_name=eponine scaffold_597 . biological_region 3833 3839 0.999 + . logic_name=eponine scaffold_597 . biological_region 3874 3878 0.999 - . logic_name=eponine scaffold_597 . biological_region 3913 3914 0.999 - . logic_name=eponine scaffold_597 . repeat_region 3985 5121 . ? . description=dust scaffold_597 . biological_region 5270 5274 0.999 + . logic_name=eponine scaffold_597 . biological_region 5279 5281 0.999 - . logic_name=eponine scaffold_597 . biological_region 5474 5475 0.999 + . logic_name=eponine scaffold_597 . biological_region 5553 5555 0.999 - . logic_name=eponine scaffold_597 . biological_region 5571 5578 0.999 - . logic_name=eponine scaffold_597 . biological_region 6128 6133 0.999 - . logic_name=eponine scaffold_597 . biological_region 6203 6208 0.999 - . logic_name=eponine scaffold_597 . biological_region 6261 6262 0.999 + . logic_name=eponine scaffold_597 . biological_region 6269 6272 0.999 - . logic_name=eponine scaffold_597 . biological_region 6323 6329 0.999 + . logic_name=eponine scaffold_597 . biological_region 6332 6337 0.999 - . logic_name=eponine scaffold_597 . biological_region 6752 6756 0.999 - . logic_name=eponine scaffold_597 . repeat_region 7308 8303 . ? . description=dust scaffold_597 . biological_region 8344 8346 0.999 + . logic_name=eponine scaffold_597 . biological_region 9223 9223 0.999 + . logic_name=eponine scaffold_597 . repeat_region 9602 9652 . ? . description=dust scaffold_597 ensembl protein_coding_gene 1153 9565 . - . ID=Phyra86288;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_597000001;logic_name=jgi_phyra1 scaffold_597 ensembl transcript 1153 9565 . - . ID=Phyra86288;Parent=Phyra86288;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_597 . CDS 1153 1456 . - 0 ID=Phyra86288;Parent=Phyra86288;rank=8 scaffold_597 . exon 1153 1456 . - . ID=Phyra86288.8;Parent=Phyra86288;constitutive=1;ensembl_phase=2;rank=8 scaffold_597 . CDS 2726 3082 . - 0 ID=Phyra86288;Parent=Phyra86288;rank=7 scaffold_597 . exon 2726 3082 . - . ID=Phyra86288.7;Parent=Phyra86288;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_597 . CDS 3132 3274 . - 0 ID=Phyra86288;Parent=Phyra86288;rank=6 scaffold_597 . exon 3132 3274 . - . ID=Phyra86288.6;Parent=Phyra86288;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_597 . CDS 3301 3749 . - 0 ID=Phyra86288;Parent=Phyra86288;rank=5 scaffold_597 . exon 3301 3749 . - . ID=Phyra86288.5;Parent=Phyra86288;constitutive=1;ensembl_phase=1;rank=5 scaffold_597 . CDS 3839 3932 . - 0 ID=Phyra86288;Parent=Phyra86288;rank=4 scaffold_597 . exon 3839 3932 . - . ID=Phyra86288.4;Parent=Phyra86288;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_597 . CDS 5143 5640 . - 0 ID=Phyra86288;Parent=Phyra86288;rank=3 scaffold_597 . exon 5143 5640 . - . ID=Phyra86288.3;Parent=Phyra86288;constitutive=1;rank=3 scaffold_597 . CDS 5685 7261 . - 0 ID=Phyra86288;Parent=Phyra86288;rank=2 scaffold_597 . exon 5685 7261 . - . ID=Phyra86288.2;Parent=Phyra86288;constitutive=1;ensembl_phase=1;rank=2 scaffold_597 . CDS 8320 9565 . - 0 ID=Phyra86288;Parent=Phyra86288;rank=1 scaffold_597 . exon 8320 9565 . - . ID=Phyra86288.1;Parent=Phyra86288;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_599 1 9764 scaffold_599 . repeat_region 3231 3238 . ? . description=dust scaffold_599 . repeat_region 5193 5242 . ? . description=dust scaffold_599 . biological_region 6198 6200 0.999 - . logic_name=eponine scaffold_599 . repeat_region 6303 8460 . ? . description=dust scaffold_599 . repeat_region 9312 9321 . ? . description=dust scaffold_599 ensembl protein_coding_gene 5671 6042 . - . ID=Phyra86289;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_599000001;logic_name=jgi_phyra1 scaffold_599 ensembl transcript 5671 6042 . - . ID=Phyra86289;Parent=Phyra86289;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_599 . CDS 5671 6042 . - 0 ID=Phyra86289;Parent=Phyra86289;rank=1 scaffold_599 . exon 5671 6042 . - . ID=Phyra86289.1;Parent=Phyra86289;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_564 1 9772 scaffold_564 . repeat_region 2176 2184 . ? . description=dust scaffold_564 . repeat_region 2466 4736 . ? . description=dust scaffold_564 . biological_region 6525 6535 0.999 + . logic_name=eponine scaffold_564 . biological_region 6552 6553 0.999 + . logic_name=eponine scaffold_564 . biological_region 6581 6588 0.999 - . logic_name=eponine scaffold_564 . biological_region 6594 6600 0.999 + . logic_name=eponine scaffold_564 ensembl protein_coding_gene 541 1722 . + . ID=Phyra86252;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_564000001;logic_name=jgi_phyra1 scaffold_564 ensembl transcript 541 1722 . + . ID=Phyra86252;Parent=Phyra86252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_564 . CDS 541 574 . + 0 ID=Phyra86252;Parent=Phyra86252;rank=1 scaffold_564 . exon 541 574 . + . ID=Phyra86252.1;Parent=Phyra86252;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_564 . CDS 701 1722 . + 0 ID=Phyra86252;Parent=Phyra86252;rank=2 scaffold_564 . exon 701 1722 . + . ID=Phyra86252.2;Parent=Phyra86252;constitutive=1;ensembl_phase=1;rank=2 scaffold_564 ensembl protein_coding_gene 9254 9718 . - . ID=Phyra86253;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_564000002;logic_name=jgi_phyra1 scaffold_564 ensembl transcript 9254 9718 . - . ID=Phyra86253;Parent=Phyra86253;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_564 . CDS 9254 9718 . - 0 ID=Phyra86253;Parent=Phyra86253;rank=1 scaffold_564 . exon 9254 9718 . - . ID=Phyra86253.1;Parent=Phyra86253;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_595 1 9777 scaffold_595 . repeat_region 2048 2058 . ? . description=dust scaffold_595 . repeat_region 2952 7133 . ? . description=dust scaffold_595 . biological_region 7648 7648 0.999 + . logic_name=eponine scaffold_595 . repeat_region 9062 9069 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_594 1 9799 scaffold_594 . repeat_region 1279 1862 . - . description=Gypsy-1-I_PI-int scaffold_594 . repeat_region 3089 3115 . ? . description=trf scaffold_594 . repeat_region 3336 7883 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_592 1 9808 scaffold_592 . repeat_region 953 7061 . ? . description=dust scaffold_592 . repeat_region 7366 7375 . ? . description=dust scaffold_592 . repeat_region 8092 8219 . - . description=GypsyPi-1c_LTR scaffold_592 ensembl snRNA_gene 7649 7764 . - . ID=EPrPRAG00000000168;biotype=snRNA;description=U5 spliceosomal RNA [Source:RFAM%3BAcc:RF00020];external_name=U5;logic_name=ncrna_eg scaffold_592 ensembl snRNA 7649 7764 . - . ID=EPrPRAT00000000168;Parent=EPrPRAG00000000168;biotype=snRNA;logic_name=ncrna_eg scaffold_592 . exon 7649 7764 . - . ID=EPrPRAE00000000168;Parent=EPrPRAT00000000168;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_596 1 9822 scaffold_596 . repeat_region 1416 1424 . ? . description=dust scaffold_596 . repeat_region 2580 2598 . ? . description=dust scaffold_596 . repeat_region 3514 4394 . ? . description=dust scaffold_596 . repeat_region 5361 8120 . ? . description=dust scaffold_596 . repeat_region 8851 8900 . ? . description=dust scaffold_596 . repeat_region 9265 9320 . ? . description=trf scaffold_596 . repeat_region 9318 9347 . ? . description=trf scaffold_596 ensembl protein_coding_gene 205 648 . + . ID=Phyra72409;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_596000001;logic_name=jgi_phyra1 scaffold_596 ensembl transcript 205 648 . + . ID=Phyra72409;Parent=Phyra72409;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_596 . CDS 205 648 . + 0 ID=Phyra72409;Parent=Phyra72409;rank=1 scaffold_596 . exon 205 648 . + . ID=Phyra72409.1;Parent=Phyra72409;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_593 1 9850 scaffold_593 . biological_region 851 855 0.999 - . logic_name=eponine scaffold_593 . repeat_region 3589 7319 . ? . description=dust scaffold_593 . biological_region 7981 7983 0.999 - . logic_name=eponine scaffold_593 . biological_region 8165 8168 0.999 - . logic_name=eponine scaffold_593 . repeat_region 8278 8327 . ? . description=dust scaffold_593 . repeat_region 8702 8718 . ? . description=dust scaffold_593 . biological_region 8896 8897 0.999 + . logic_name=eponine scaffold_593 . repeat_region 8971 9249 . - . description=GypsyPi-1c_I-int scaffold_593 . repeat_region 9504 9828 . - . description=GypsyPi-1c_I-int scaffold_593 ensembl protein_coding_gene 9625 9846 . - . ID=Phyra51301;biotype=protein_coding;external_name=gwEuk.593.3.1;logic_name=jgi_phyra1 scaffold_593 ensembl transcript 9625 9846 . - . ID=Phyra51301;Parent=Phyra51301;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_593 . CDS 9625 9846 . - 0 ID=Phyra51301;Parent=Phyra51301;rank=1 scaffold_593 . exon 9625 9846 . - . ID=Phyra51301.1;Parent=Phyra51301;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_590 1 9908 scaffold_590 . repeat_region 2198 2247 . ? . description=dust scaffold_590 . repeat_region 3170 8343 . ? . description=dust scaffold_590 ensembl protein_coding_gene 2348 2749 . + . ID=Phyra86284;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_590000001;logic_name=jgi_phyra1 scaffold_590 ensembl transcript 2348 2749 . + . ID=Phyra86284;Parent=Phyra86284;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_590 . CDS 2348 2749 . + 0 ID=Phyra86284;Parent=Phyra86284;rank=1 scaffold_590 . exon 2348 2749 . + . ID=Phyra86284.1;Parent=Phyra86284;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_598 1 9919 scaffold_598 . repeat_region 727 771 . ? . description=trf scaffold_598 . repeat_region 1905 6096 . ? . description=dust scaffold_598 . repeat_region 6686 6694 . ? . description=dust scaffold_598 . repeat_region 9694 9842 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_574 1 9925 scaffold_574 . repeat_region 381 397 . ? . description=dust scaffold_574 . repeat_region 1308 5109 . ? . description=dust scaffold_574 . repeat_region 6289 6303 . ? . description=dust scaffold_574 . repeat_region 7154 7214 . ? . description=trf scaffold_574 . biological_region 9096 9096 0.999 - . logic_name=eponine scaffold_574 . biological_region 9126 9130 0.999 - . logic_name=eponine scaffold_574 . biological_region 9349 9354 0.999 - . logic_name=eponine scaffold_574 ensembl protein_coding_gene 8902 9916 . - . ID=Phyra86263;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_574000001;logic_name=jgi_phyra1 scaffold_574 ensembl transcript 8902 9916 . - . ID=Phyra86263;Parent=Phyra86263;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_574 . CDS 8902 9732 . - 0 ID=Phyra86263;Parent=Phyra86263;rank=2 scaffold_574 . exon 8902 9732 . - . ID=Phyra86263.2;Parent=Phyra86263;constitutive=1;rank=2 scaffold_574 . CDS 9815 9916 . - 0 ID=Phyra86263;Parent=Phyra86263;rank=1 scaffold_574 . exon 9815 9916 . - . ID=Phyra86263.1;Parent=Phyra86263;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_585 1 9927 scaffold_585 . repeat_region 1219 6939 . ? . description=dust scaffold_585 . biological_region 9348 9355 0.999 + . logic_name=eponine scaffold_585 . biological_region 9350 9354 0.999 - . logic_name=eponine scaffold_585 . biological_region 9404 9408 0.999 - . logic_name=eponine scaffold_585 . biological_region 9407 9407 0.999 + . logic_name=eponine scaffold_585 . biological_region 9420 9431 0.999 + . logic_name=eponine scaffold_585 . biological_region 9426 9430 0.999 - . logic_name=eponine scaffold_585 . biological_region 9462 9464 0.999 - . logic_name=eponine scaffold_585 . biological_region 9480 9485 0.999 + . logic_name=eponine scaffold_585 ensembl protein_coding_gene 9053 9890 . - . ID=Phyra86278;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_585000001;logic_name=jgi_phyra1 scaffold_585 ensembl transcript 9053 9890 . - . ID=Phyra86278;Parent=Phyra86278;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_585 . CDS 9053 9889 . - 0 ID=Phyra86278;Parent=Phyra86278;rank=1 scaffold_585 . exon 9053 9890 . - . ID=Phyra86278.1;Parent=Phyra86278;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_588 1 9942 scaffold_588 . repeat_region 1967 2003 . ? . description=trf scaffold_588 . repeat_region 4139 4188 . ? . description=dust scaffold_588 . biological_region 6187 6189 0.999 - . logic_name=eponine scaffold_588 . repeat_region 6637 8502 . ? . description=dust scaffold_588 ensembl protein_coding_gene 6236 6607 . + . ID=Phyra51170;biotype=protein_coding;external_name=gwEuk.588.1.1;logic_name=jgi_phyra1 scaffold_588 ensembl transcript 6236 6607 . + . ID=Phyra51170;Parent=Phyra51170;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_588 . CDS 6236 6607 . + 0 ID=Phyra51170;Parent=Phyra51170;rank=1 scaffold_588 . exon 6236 6607 . + . ID=Phyra51170.1;Parent=Phyra51170;constitutive=1;rank=1 scaffold_588 ensembl protein_coding_gene 2477 3439 . + . ID=Phyra86281;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_588000001;logic_name=jgi_phyra1 scaffold_588 ensembl transcript 2477 3439 . + . ID=Phyra86281;Parent=Phyra86281;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_588 . CDS 2477 3439 . + 0 ID=Phyra86281;Parent=Phyra86281;rank=1 scaffold_588 . exon 2477 3439 . + . ID=Phyra86281.1;Parent=Phyra86281;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_589 1 9947 scaffold_589 . repeat_region 982 6358 . ? . description=dust scaffold_589 . repeat_region 8126 9016 . ? . description=dust scaffold_589 . biological_region 9404 9411 0.999 - . logic_name=eponine scaffold_589 ensembl protein_coding_gene 7991 9627 . + . ID=Phyra86283;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_589000001;logic_name=jgi_phyra1 scaffold_589 ensembl transcript 7991 9627 . + . ID=Phyra86283;Parent=Phyra86283;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_589 . CDS 7991 8011 . + 0 ID=Phyra86283;Parent=Phyra86283;rank=1 scaffold_589 . exon 7991 8011 . + . ID=Phyra86283.1;Parent=Phyra86283;constitutive=1;rank=1 scaffold_589 . CDS 9076 9627 . + 0 ID=Phyra86283;Parent=Phyra86283;rank=2 scaffold_589 . exon 9076 9627 . + . ID=Phyra86283.2;Parent=Phyra86283;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_581 1 9962 scaffold_581 . biological_region 595 598 0.999 - . logic_name=eponine scaffold_581 . biological_region 1325 1327 0.999 + . logic_name=eponine scaffold_581 . biological_region 1627 1628 0.999 - . logic_name=eponine scaffold_581 . biological_region 1804 1806 0.999 - . logic_name=eponine scaffold_581 . repeat_region 2280 7175 . ? . description=dust scaffold_581 . biological_region 9002 9003 0.999 + . logic_name=eponine scaffold_581 ensembl protein_coding_gene 1387 1743 . - . ID=Phyra86271;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_581000001;logic_name=jgi_phyra1 scaffold_581 ensembl transcript 1387 1743 . - . ID=Phyra86271;Parent=Phyra86271;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_581 . CDS 1387 1704 . - 0 ID=Phyra86271;Parent=Phyra86271;rank=2 scaffold_581 . exon 1387 1704 . - . ID=Phyra86271.2;Parent=Phyra86271;constitutive=1;rank=2 scaffold_581 . CDS 1732 1743 . - 0 ID=Phyra86271;Parent=Phyra86271;rank=1 scaffold_581 . exon 1732 1743 . - . ID=Phyra86271.1;Parent=Phyra86271;constitutive=1;rank=1 scaffold_581 ensembl protein_coding_gene 7828 8322 . + . ID=Phyra86272;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_581000002;logic_name=jgi_phyra1 scaffold_581 ensembl transcript 7828 8322 . + . ID=Phyra86272;Parent=Phyra86272;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_581 . CDS 7828 8322 . + 0 ID=Phyra86272;Parent=Phyra86272;rank=1 scaffold_581 . exon 7828 8322 . + . ID=Phyra86272.1;Parent=Phyra86272;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_580 1 9987 scaffold_580 . repeat_region 30 38 . ? . description=dust scaffold_580 . repeat_region 1818 1943 . ? . description=trf scaffold_580 . repeat_region 1825 1919 . ? . description=dust scaffold_580 . repeat_region 4698 6713 . ? . description=dust scaffold_580 . repeat_region 9143 9170 . ? . description=trf scaffold_580 ensembl protein_coding_gene 6721 9530 . + . ID=Phyra86270;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_580000001;logic_name=jgi_phyra1 scaffold_580 ensembl transcript 6721 9530 . + . ID=Phyra86270;Parent=Phyra86270;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_580 . CDS 6721 9082 . + 0 ID=Phyra86270;Parent=Phyra86270;rank=1 scaffold_580 . exon 6721 9082 . + . ID=Phyra86270.1;Parent=Phyra86270;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_580 . CDS 9253 9530 . + 0 ID=Phyra86270;Parent=Phyra86270;rank=2 scaffold_580 . exon 9253 9530 . + . ID=Phyra86270.2;Parent=Phyra86270;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_578 1 10028 scaffold_578 . repeat_region 1374 6643 . ? . description=dust scaffold_578 . biological_region 7221 7222 0.999 - . logic_name=eponine scaffold_578 . biological_region 7381 7387 0.999 + . logic_name=eponine scaffold_578 . biological_region 7412 7417 0.999 - . logic_name=eponine scaffold_578 . biological_region 7475 7475 0.999 - . logic_name=eponine scaffold_578 . repeat_region 7844 7898 . ? . description=trf scaffold_578 ensembl protein_coding_gene 7138 7503 . + . ID=Phyra86268;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_578000001;logic_name=jgi_phyra1 scaffold_578 ensembl transcript 7138 7503 . + . ID=Phyra86268;Parent=Phyra86268;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_578 . CDS 7138 7503 . + 0 ID=Phyra86268;Parent=Phyra86268;rank=1 scaffold_578 . exon 7138 7503 . + . ID=Phyra86268.1;Parent=Phyra86268;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_587 1 10028 scaffold_587 . repeat_region 1056 5925 . ? . description=dust scaffold_587 ensembl protein_coding_gene 5964 7542 . - . ID=Phyra86279;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_587000001;logic_name=jgi_phyra1 scaffold_587 ensembl transcript 5964 7542 . - . ID=Phyra86279;Parent=Phyra86279;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_587 . CDS 5964 5976 . - 0 ID=Phyra86279;Parent=Phyra86279;rank=3 scaffold_587 . exon 5964 5976 . - . ID=Phyra86279.3;Parent=Phyra86279;constitutive=1;ensembl_phase=2;rank=3 scaffold_587 . CDS 6022 6053 . - 0 ID=Phyra86279;Parent=Phyra86279;rank=2 scaffold_587 . exon 6022 6053 . - . ID=Phyra86279.2;Parent=Phyra86279;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_587 . CDS 6142 7542 . - 0 ID=Phyra86279;Parent=Phyra86279;rank=1 scaffold_587 . exon 6142 7542 . - . ID=Phyra86279.1;Parent=Phyra86279;constitutive=1;rank=1 scaffold_587 ensembl protein_coding_gene 9671 10016 . + . ID=Phyra86280;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_587000002;logic_name=jgi_phyra1 scaffold_587 ensembl transcript 9671 10016 . + . ID=Phyra86280;Parent=Phyra86280;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_587 . CDS 9671 10016 . + 0 ID=Phyra86280;Parent=Phyra86280;rank=1 scaffold_587 . exon 9671 10016 . + . ID=Phyra86280.1;Parent=Phyra86280;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_575 1 10047 scaffold_575 . biological_region 54 60 0.999 + . logic_name=eponine scaffold_575 . repeat_region 3531 3597 . ? . description=trf scaffold_575 . repeat_region 4049 4079 . ? . description=trf scaffold_575 ensembl protein_coding_gene 71 532 . - . ID=Phyra86264;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_575000001;logic_name=jgi_phyra1 scaffold_575 ensembl transcript 71 532 . - . ID=Phyra86264;Parent=Phyra86264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_575 . CDS 71 532 . - 0 ID=Phyra86264;Parent=Phyra86264;rank=1 scaffold_575 . exon 71 532 . - . ID=Phyra86264.1;Parent=Phyra86264;constitutive=1;rank=1 scaffold_575 . repeat_region 5911 6341 . ? . description=dust scaffold_575 . repeat_region 7333 8532 . ? . description=dust scaffold_575 . repeat_region 8533 9747 . + . description=GypsyPi-1c_I-int scaffold_575 ensembl protein_coding_gene 9372 9626 . + . ID=Phyra50984;biotype=protein_coding;external_name=gwEuk.575.2.1;logic_name=jgi_phyra1 scaffold_575 ensembl transcript 9372 9626 . + . ID=Phyra50984;Parent=Phyra50984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_575 . CDS 9372 9626 . + 0 ID=Phyra50984;Parent=Phyra50984;rank=1 scaffold_575 . exon 9372 9626 . + . ID=Phyra50984.1;Parent=Phyra50984;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_570 1 10055 scaffold_570 . repeat_region 127 146 . ? . description=trf scaffold_570 . repeat_region 4152 9263 . ? . description=dust scaffold_570 ensembl protein_coding_gene 177 776 . + . ID=Phyra86260;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_570000001;logic_name=jgi_phyra1 scaffold_570 ensembl transcript 177 776 . + . ID=Phyra86260;Parent=Phyra86260;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_570 . CDS 177 776 . + 0 ID=Phyra86260;Parent=Phyra86260;rank=1 scaffold_570 . exon 177 776 . + . ID=Phyra86260.1;Parent=Phyra86260;constitutive=1;rank=1 scaffold_570 ensembl protein_coding_gene 1660 3931 . + . ID=Phyra86261;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_570000002;logic_name=jgi_phyra1 scaffold_570 ensembl transcript 1660 3931 . + . ID=Phyra86261;Parent=Phyra86261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_570 . CDS 1660 1954 . + 0 ID=Phyra86261;Parent=Phyra86261;rank=1 scaffold_570 . exon 1660 1954 . + . ID=Phyra86261.1;Parent=Phyra86261;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_570 . CDS 2002 2180 . + 0 ID=Phyra86261;Parent=Phyra86261;rank=2 scaffold_570 . exon 2002 2180 . + . ID=Phyra86261.2;Parent=Phyra86261;constitutive=1;ensembl_phase=1;rank=2 scaffold_570 . CDS 2369 3931 . + 0 ID=Phyra86261;Parent=Phyra86261;rank=3 scaffold_570 . exon 2369 3931 . + . ID=Phyra86261.3;Parent=Phyra86261;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_582 1 10056 scaffold_582 . repeat_region 666 715 . ? . description=dust scaffold_582 . repeat_region 1448 2826 . ? . description=dust scaffold_582 ensembl protein_coding_gene 287 640 . - . ID=Phyra86273;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_582000001;logic_name=jgi_phyra1 scaffold_582 ensembl transcript 287 640 . - . ID=Phyra86273;Parent=Phyra86273;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_582 . CDS 287 640 . - 0 ID=Phyra86273;Parent=Phyra86273;rank=1 scaffold_582 . exon 287 640 . - . ID=Phyra86273.1;Parent=Phyra86273;constitutive=1;rank=1 scaffold_582 ensembl protein_coding_gene 3162 4843 . + . ID=Phyra86274;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_582000002;logic_name=jgi_phyra1 scaffold_582 ensembl transcript 3162 4843 . + . ID=Phyra86274;Parent=Phyra86274;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_582 . CDS 3162 3782 . + 0 ID=Phyra86274;Parent=Phyra86274;rank=1 scaffold_582 . exon 3162 3782 . + . ID=Phyra86274.1;Parent=Phyra86274;constitutive=1;rank=1 scaffold_582 . CDS 4053 4072 . + 0 ID=Phyra86274;Parent=Phyra86274;rank=2 scaffold_582 . exon 4053 4072 . + . ID=Phyra86274.2;Parent=Phyra86274;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_582 . CDS 4135 4843 . + 0 ID=Phyra86274;Parent=Phyra86274;rank=3 scaffold_582 . exon 4135 4843 . + . ID=Phyra86274.3;Parent=Phyra86274;constitutive=1;ensembl_phase=2;rank=3 scaffold_582 . repeat_region 5433 5453 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_577 1 10067 scaffold_577 . repeat_region 988 2079 . ? . description=dust scaffold_577 . repeat_region 3638 7329 . ? . description=dust scaffold_577 . biological_region 8014 8017 0.999 - . logic_name=eponine scaffold_577 . biological_region 8484 8489 0.999 + . logic_name=eponine scaffold_577 ensembl protein_coding_gene 7357 8596 . - . ID=Phyra86266;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_577000001;logic_name=jgi_phyra1 scaffold_577 ensembl transcript 7357 8596 . - . ID=Phyra86266;Parent=Phyra86266;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_577 . CDS 7357 8259 . - 0 ID=Phyra86266;Parent=Phyra86266;rank=2 scaffold_577 . exon 7357 8259 . - . ID=Phyra86266.2;Parent=Phyra86266;constitutive=1;rank=2 scaffold_577 . CDS 8399 8596 . - 0 ID=Phyra86266;Parent=Phyra86266;rank=1 scaffold_577 . exon 8399 8596 . - . ID=Phyra86266.1;Parent=Phyra86266;constitutive=1;rank=1 scaffold_577 ensembl protein_coding_gene 9070 10039 . + . ID=Phyra86267;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_577000002;logic_name=jgi_phyra1 scaffold_577 ensembl transcript 9070 10039 . + . ID=Phyra86267;Parent=Phyra86267;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_577 . CDS 9070 9132 . + 0 ID=Phyra86267;Parent=Phyra86267;rank=1 scaffold_577 . exon 9070 9132 . + . ID=Phyra86267.1;Parent=Phyra86267;constitutive=1;rank=1 scaffold_577 . CDS 9287 9316 . + 0 ID=Phyra86267;Parent=Phyra86267;rank=2 scaffold_577 . exon 9287 9316 . + . ID=Phyra86267.2;Parent=Phyra86267;constitutive=1;rank=2 scaffold_577 . CDS 9378 10039 . + 0 ID=Phyra86267;Parent=Phyra86267;rank=3 scaffold_577 . exon 9378 10039 . + . ID=Phyra86267.3;Parent=Phyra86267;constitutive=1;ensembl_end_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_579 1 10067 scaffold_579 . repeat_region 309 752 . + . description=GypsyPi-1c_I-int scaffold_579 . repeat_region 1373 2268 . ? . description=dust scaffold_579 . biological_region 2307 2312 0.999 + . logic_name=eponine scaffold_579 . repeat_region 2328 3246 . + . description=GypsyPi-1c_I-int scaffold_579 . repeat_region 3610 8179 . ? . description=dust scaffold_579 ensembl protein_coding_gene 45 741 . + . ID=Phyra86269;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_579000001;logic_name=jgi_phyra1 scaffold_579 ensembl transcript 45 741 . + . ID=Phyra86269;Parent=Phyra86269;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_579 . exon 45 741 . + . ID=Phyra86269.1;Parent=Phyra86269;constitutive=1;ensembl_phase=-1;rank=1 scaffold_579 . CDS 46 741 . + 0 ID=Phyra86269;Parent=Phyra86269;rank=1 ##gff-version 3 ##sequence-region scaffold_571 1 10081 scaffold_571 . repeat_region 1707 1918 . + . description=(TGAG)n scaffold_571 . repeat_region 1882 1918 . ? . description=trf scaffold_571 . repeat_region 1882 1918 . ? . description=dust scaffold_571 . repeat_region 2126 2134 . ? . description=dust scaffold_571 . repeat_region 3566 8830 . ? . description=dust scaffold_571 ensembl tRNA_gene 3263 3343 . + . ID=EPrPRAG00000000160;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_571 ensembl transcript 3263 3343 . + . ID=EPrPRAT00000000160;Parent=EPrPRAG00000000160;biotype=tRNA;logic_name=ncrna_eg scaffold_571 . exon 3263 3343 . + . ID=EPrPRAE00000000160;Parent=EPrPRAT00000000160;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_555 1 10086 scaffold_555 . biological_region 3425 3430 0.999 + . logic_name=eponine scaffold_555 . repeat_region 3756 7079 . ? . description=dust scaffold_555 ensembl protein_coding_gene 88 2558 . - . ID=Phyra86240;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_555000001;logic_name=jgi_phyra1 scaffold_555 ensembl transcript 88 2558 . - . ID=Phyra86240;Parent=Phyra86240;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_555 . CDS 88 1871 . - 0 ID=Phyra86240;Parent=Phyra86240;rank=2 scaffold_555 . exon 88 1871 . - . ID=Phyra86240.2;Parent=Phyra86240;constitutive=1;ensembl_phase=1;rank=2 scaffold_555 . CDS 2399 2558 . - 0 ID=Phyra86240;Parent=Phyra86240;rank=1 scaffold_555 . exon 2399 2558 . - . ID=Phyra86240.1;Parent=Phyra86240;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_555 . repeat_region 8519 8567 . ? . description=trf scaffold_555 ensembl protein_coding_gene 9361 10004 . + . ID=Phyra86241;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_555000002;logic_name=jgi_phyra1 scaffold_555 ensembl transcript 9361 10004 . + . ID=Phyra86241;Parent=Phyra86241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_555 . CDS 9361 9729 . + 0 ID=Phyra86241;Parent=Phyra86241;rank=1 scaffold_555 . exon 9361 9729 . + . ID=Phyra86241.1;Parent=Phyra86241;constitutive=1;rank=1 scaffold_555 . CDS 9786 10004 . + 0 ID=Phyra86241;Parent=Phyra86241;rank=2 scaffold_555 . exon 9786 10004 . + . ID=Phyra86241.2;Parent=Phyra86241;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_583 1 10086 scaffold_583 . biological_region 236 239 0.999 + . logic_name=eponine scaffold_583 . repeat_region 1069 1117 . ? . description=dust scaffold_583 . repeat_region 1073 1100 . ? . description=trf scaffold_583 . repeat_region 1169 6206 . ? . description=dust scaffold_583 ensembl protein_coding_gene 41 552 . - . ID=Phyra86275;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_583000001;logic_name=jgi_phyra1 scaffold_583 ensembl transcript 41 552 . - . ID=Phyra86275;Parent=Phyra86275;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_583 . CDS 41 552 . - 0 ID=Phyra86275;Parent=Phyra86275;rank=1 scaffold_583 . exon 41 552 . - . ID=Phyra86275.1;Parent=Phyra86275;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_567 1 10109 scaffold_567 . repeat_region 233 243 . ? . description=dust scaffold_567 . repeat_region 2095 6334 . ? . description=dust scaffold_567 ensembl protein_coding_gene 6536 6685 . - . ID=Phyra50868;biotype=protein_coding;external_name=gwEuk.567.1.1;logic_name=jgi_phyra1 scaffold_567 ensembl transcript 6536 6685 . - . ID=Phyra50868;Parent=Phyra50868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_567 . CDS 6536 6685 . - 0 ID=Phyra50868;Parent=Phyra50868;rank=1 scaffold_567 . exon 6536 6685 . - . ID=Phyra50868.1;Parent=Phyra50868;constitutive=1;rank=1 scaffold_567 ensembl protein_coding_gene 8148 9812 . - . ID=Phyra86257;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_567000001;logic_name=jgi_phyra1 scaffold_567 ensembl transcript 8148 9812 . - . ID=Phyra86257;Parent=Phyra86257;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_567 . CDS 8148 8157 . - 0 ID=Phyra86257;Parent=Phyra86257;rank=3 scaffold_567 . exon 8148 8157 . - . ID=Phyra86257.3;Parent=Phyra86257;constitutive=1;ensembl_phase=2;rank=3 scaffold_567 . CDS 8652 9352 . - 0 ID=Phyra86257;Parent=Phyra86257;rank=2 scaffold_567 . exon 8652 9352 . - . ID=Phyra86257.2;Parent=Phyra86257;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_567 . CDS 9429 9812 . - 0 ID=Phyra86257;Parent=Phyra86257;rank=1 scaffold_567 . exon 9429 9812 . - . ID=Phyra86257.1;Parent=Phyra86257;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_576 1 10112 scaffold_576 . repeat_region 888 5745 . ? . description=dust scaffold_576 . biological_region 6429 6431 0.999 + . logic_name=eponine scaffold_576 . biological_region 6612 6618 0.999 + . logic_name=eponine scaffold_576 . repeat_region 8073 8244 . ? . description=trf scaffold_576 . biological_region 8089 8096 0.999 - . logic_name=eponine scaffold_576 . repeat_region 8093 8250 . ? . description=trf scaffold_576 . repeat_region 8093 8273 . ? . description=trf scaffold_576 . biological_region 8125 8126 0.999 - . logic_name=eponine scaffold_576 . repeat_region 9287 10112 . + . description=GypsyPi-1c_I-int scaffold_576 . biological_region 9873 9874 0.999 - . logic_name=eponine scaffold_576 ensembl protein_coding_gene 9315 9593 . + . ID=Phyra50985;biotype=protein_coding;external_name=gwEuk.576.1.1;logic_name=jgi_phyra1 scaffold_576 ensembl transcript 9315 9593 . + . ID=Phyra50985;Parent=Phyra50985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_576 . CDS 9315 9593 . + 0 ID=Phyra50985;Parent=Phyra50985;rank=1 scaffold_576 . exon 9315 9593 . + . ID=Phyra50985.1;Parent=Phyra50985;constitutive=1;rank=1 scaffold_576 ensembl protein_coding_gene 5876 7091 . - . ID=Phyra86265;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_576000001;logic_name=jgi_phyra1 scaffold_576 ensembl transcript 5876 7091 . - . ID=Phyra86265;Parent=Phyra86265;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_576 . CDS 5876 5887 . - 0 ID=Phyra86265;Parent=Phyra86265;rank=4 scaffold_576 . exon 5876 5887 . - . ID=Phyra86265.4;Parent=Phyra86265;constitutive=1;rank=4 scaffold_576 . CDS 5982 6115 . - 0 ID=Phyra86265;Parent=Phyra86265;rank=3 scaffold_576 . exon 5982 6115 . - . ID=Phyra86265.3;Parent=Phyra86265;constitutive=1;ensembl_phase=1;rank=3 scaffold_576 . CDS 6140 6157 . - 0 ID=Phyra86265;Parent=Phyra86265;rank=2 scaffold_576 . exon 6140 6157 . - . ID=Phyra86265.2;Parent=Phyra86265;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_576 . CDS 6212 7091 . - 0 ID=Phyra86265;Parent=Phyra86265;rank=1 scaffold_576 . exon 6212 7091 . - . ID=Phyra86265.1;Parent=Phyra86265;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_566 1 10122 scaffold_566 . biological_region 1010 1016 0.999 - . logic_name=eponine scaffold_566 . biological_region 1022 1029 0.999 + . logic_name=eponine scaffold_566 . biological_region 1057 1058 0.999 - . logic_name=eponine scaffold_566 . biological_region 1075 1085 0.999 - . logic_name=eponine scaffold_566 . repeat_region 2076 8196 . ? . description=dust scaffold_566 ensembl protein_coding_gene 32 804 . - . ID=Phyra86256;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_566000001;logic_name=jgi_phyra1 scaffold_566 ensembl transcript 32 804 . - . ID=Phyra86256;Parent=Phyra86256;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_566 . CDS 32 804 . - 0 ID=Phyra86256;Parent=Phyra86256;rank=1 scaffold_566 . exon 32 804 . - . ID=Phyra86256.1;Parent=Phyra86256;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_572 1 10125 scaffold_572 . repeat_region 2078 6195 . ? . description=dust scaffold_572 ensembl protein_coding_gene 906 1790 . - . ID=Phyra86262;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_572000001;logic_name=jgi_phyra1 scaffold_572 ensembl transcript 906 1790 . - . ID=Phyra86262;Parent=Phyra86262;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_572 . CDS 906 1790 . - 0 ID=Phyra86262;Parent=Phyra86262;rank=1 scaffold_572 . exon 906 1790 . - . ID=Phyra86262.1;Parent=Phyra86262;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_565 1 10131 scaffold_565 . repeat_region 4604 9383 . ? . description=dust scaffold_565 ensembl protein_coding_gene 504 4342 . - . ID=Phyra86254;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_565000001;logic_name=jgi_phyra1 scaffold_565 ensembl transcript 504 4342 . - . ID=Phyra86254;Parent=Phyra86254;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_565 . CDS 504 1212 . - 0 ID=Phyra86254;Parent=Phyra86254;rank=8 scaffold_565 . exon 504 1212 . - . ID=Phyra86254.8;Parent=Phyra86254;constitutive=1;ensembl_phase=2;rank=8 scaffold_565 . CDS 1275 1294 . - 0 ID=Phyra86254;Parent=Phyra86254;rank=7 scaffold_565 . exon 1275 1294 . - . ID=Phyra86254.7;Parent=Phyra86254;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_565 . CDS 1565 2199 . - 0 ID=Phyra86254;Parent=Phyra86254;rank=6 scaffold_565 . exon 1565 2199 . - . ID=Phyra86254.6;Parent=Phyra86254;constitutive=1;ensembl_phase=1;rank=6 scaffold_565 . CDS 2335 2380 . - 0 ID=Phyra86254;Parent=Phyra86254;rank=5 scaffold_565 . exon 2335 2380 . - . ID=Phyra86254.5;Parent=Phyra86254;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_565 . CDS 2824 3254 . - 0 ID=Phyra86254;Parent=Phyra86254;rank=4 scaffold_565 . exon 2824 3254 . - . ID=Phyra86254.4;Parent=Phyra86254;constitutive=1;ensembl_phase=1;rank=4 scaffold_565 . CDS 3366 3711 . - 0 ID=Phyra86254;Parent=Phyra86254;rank=3 scaffold_565 . exon 3366 3711 . - . ID=Phyra86254.3;Parent=Phyra86254;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_565 . CDS 3780 4076 . - 0 ID=Phyra86254;Parent=Phyra86254;rank=2 scaffold_565 . exon 3780 4076 . - . ID=Phyra86254.2;Parent=Phyra86254;constitutive=1;rank=2 scaffold_565 . CDS 4199 4342 . - 0 ID=Phyra86254;Parent=Phyra86254;rank=1 scaffold_565 . exon 4199 4342 . - . ID=Phyra86254.1;Parent=Phyra86254;constitutive=1;rank=1 scaffold_565 ensembl protein_coding_gene 9701 10081 . + . ID=Phyra86255;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_565000002;logic_name=jgi_phyra1 scaffold_565 ensembl transcript 9701 10081 . + . ID=Phyra86255;Parent=Phyra86255;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_565 . CDS 9701 10081 . + 0 ID=Phyra86255;Parent=Phyra86255;rank=1 scaffold_565 . exon 9701 10081 . + . ID=Phyra86255.1;Parent=Phyra86255;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_569 1 10148 scaffold_569 . repeat_region 2111 4622 . ? . description=dust scaffold_569 . repeat_region 4677 4685 . ? . description=dust scaffold_569 ensembl protein_coding_gene 94 1760 . - . ID=Phyra86258;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_569000001;logic_name=jgi_phyra1 scaffold_569 ensembl transcript 94 1760 . - . ID=Phyra86258;Parent=Phyra86258;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_569 . CDS 94 787 . - 0 ID=Phyra86258;Parent=Phyra86258;rank=3 scaffold_569 . exon 94 787 . - . ID=Phyra86258.3;Parent=Phyra86258;constitutive=1;ensembl_phase=2;rank=3 scaffold_569 . CDS 850 869 . - 0 ID=Phyra86258;Parent=Phyra86258;rank=2 scaffold_569 . exon 850 869 . - . ID=Phyra86258.2;Parent=Phyra86258;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_569 . CDS 1140 1760 . - 0 ID=Phyra86258;Parent=Phyra86258;rank=1 scaffold_569 . exon 1140 1760 . - . ID=Phyra86258.1;Parent=Phyra86258;constitutive=1;rank=1 scaffold_569 . biological_region 6534 6539 0.999 - . logic_name=eponine scaffold_569 . biological_region 9029 9029 0.999 - . logic_name=eponine scaffold_569 ensembl protein_coding_gene 6080 6649 . - . ID=Phyra86259;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_569000002;logic_name=jgi_phyra1 scaffold_569 ensembl transcript 6080 6649 . - . ID=Phyra86259;Parent=Phyra86259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_569 . CDS 6080 6099 . - 0 ID=Phyra86259;Parent=Phyra86259;rank=2 scaffold_569 . exon 6080 6099 . - . ID=Phyra86259.2;Parent=Phyra86259;constitutive=1;ensembl_phase=1;rank=2 scaffold_569 . CDS 6307 6649 . - 0 ID=Phyra86259;Parent=Phyra86259;rank=1 scaffold_569 . exon 6307 6649 . - . ID=Phyra86259.1;Parent=Phyra86259;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_563 1 10160 scaffold_563 . repeat_region 547 607 . ? . description=dust scaffold_563 . repeat_region 1504 1751 . ? . description=dust scaffold_563 . repeat_region 2399 2436 . ? . description=dust scaffold_563 . repeat_region 2474 2509 . ? . description=trf scaffold_563 . repeat_region 3427 8919 . ? . description=dust scaffold_563 ensembl protein_coding_gene 979 1449 . + . ID=Phyra86251;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_563000001;logic_name=jgi_phyra1 scaffold_563 ensembl transcript 979 1449 . + . ID=Phyra86251;Parent=Phyra86251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_563 . CDS 979 1449 . + 0 ID=Phyra86251;Parent=Phyra86251;rank=1 scaffold_563 . exon 979 1449 . + . ID=Phyra86251.1;Parent=Phyra86251;constitutive=1;rank=1 scaffold_563 . biological_region 9663 9667 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_586 1 10162 scaffold_586 . repeat_region 2175 2860 . ? . description=dust scaffold_586 . repeat_region 4199 5698 . ? . description=dust scaffold_586 . biological_region 9290 9291 0.999 - . logic_name=eponine scaffold_586 . biological_region 9297 9303 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_551 1 10168 scaffold_551 . repeat_region 1796 6375 . ? . description=dust scaffold_551 ensembl protein_coding_gene 2 646 . + . ID=Phyra72406;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_551000001;logic_name=jgi_phyra1 scaffold_551 ensembl transcript 2 646 . + . ID=Phyra72406;Parent=Phyra72406;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_551 . CDS 2 646 . + 0 ID=Phyra72406;Parent=Phyra72406;rank=1 scaffold_551 . exon 2 646 . + . ID=Phyra72406.1;Parent=Phyra72406;constitutive=1;rank=1 scaffold_551 . repeat_region 6659 6701 . ? . description=trf scaffold_551 . repeat_region 7791 7814 . ? . description=trf scaffold_551 . biological_region 8029 8031 0.999 - . logic_name=eponine scaffold_551 . repeat_region 9196 9226 . ? . description=trf scaffold_551 . biological_region 9315 9315 0.999 - . logic_name=eponine scaffold_551 ensembl protein_coding_gene 6994 10082 . + . ID=Phyra86229;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_551000002;logic_name=jgi_phyra1 scaffold_551 ensembl transcript 6994 10082 . + . ID=Phyra86229;Parent=Phyra86229;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_551 . CDS 6994 7253 . + 0 ID=Phyra86229;Parent=Phyra86229;rank=1 scaffold_551 . exon 6994 7253 . + . ID=Phyra86229.1;Parent=Phyra86229;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_551 . CDS 7300 8591 . + 0 ID=Phyra86229;Parent=Phyra86229;rank=2 scaffold_551 . exon 7300 8591 . + . ID=Phyra86229.2;Parent=Phyra86229;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_551 . CDS 8633 10082 . + 0 ID=Phyra86229;Parent=Phyra86229;rank=3 scaffold_551 . exon 8633 10082 . + . ID=Phyra86229.3;Parent=Phyra86229;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_560 1 10181 scaffold_560 . repeat_region 553 580 . ? . description=trf scaffold_560 . repeat_region 713 845 . ? . description=trf scaffold_560 . repeat_region 864 6320 . ? . description=dust scaffold_560 ensembl protein_coding_gene 9983 10180 . - . ID=Phyra50867;biotype=protein_coding;external_name=gwEuk.560.2.1;logic_name=jgi_phyra1 scaffold_560 ensembl transcript 9983 10180 . - . ID=Phyra50867;Parent=Phyra50867;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_560 . CDS 9983 10180 . - 0 ID=Phyra50867;Parent=Phyra50867;rank=1 scaffold_560 . exon 9983 10180 . - . ID=Phyra50867.1;Parent=Phyra50867;constitutive=1;rank=1 scaffold_560 ensembl protein_coding_gene 7523 9137 . + . ID=Phyra86248;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_560000001;logic_name=jgi_phyra1 scaffold_560 ensembl transcript 7523 9137 . + . ID=Phyra86248;Parent=Phyra86248;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_560 . CDS 7523 7745 . + 0 ID=Phyra86248;Parent=Phyra86248;rank=1 scaffold_560 . exon 7523 7745 . + . ID=Phyra86248.1;Parent=Phyra86248;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_560 . CDS 8000 8022 . + 0 ID=Phyra86248;Parent=Phyra86248;rank=2 scaffold_560 . exon 8000 8022 . + . ID=Phyra86248.2;Parent=Phyra86248;constitutive=1;ensembl_phase=1;rank=2 scaffold_560 . CDS 8394 9059 . + 0 ID=Phyra86248;Parent=Phyra86248;rank=3 scaffold_560 . exon 8394 9059 . + . ID=Phyra86248.3;Parent=Phyra86248;constitutive=1;rank=3 scaffold_560 . CDS 9132 9137 . + 0 ID=Phyra86248;Parent=Phyra86248;rank=4 scaffold_560 . exon 9132 9137 . + . ID=Phyra86248.4;Parent=Phyra86248;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_561 1 10195 scaffold_561 . repeat_region 1159 1842 . ? . description=dust scaffold_561 . repeat_region 2278 2317 . ? . description=dust scaffold_561 . repeat_region 2281 2317 . ? . description=trf scaffold_561 . repeat_region 2284 2317 . ? . description=trf scaffold_561 . repeat_region 2326 2402 . ? . description=trf scaffold_561 . repeat_region 2835 2855 . ? . description=dust scaffold_561 . repeat_region 3468 3542 . ? . description=trf scaffold_561 . repeat_region 4106 4152 . ? . description=trf scaffold_561 . repeat_region 4195 4216 . ? . description=dust scaffold_561 . repeat_region 4462 5532 . ? . description=dust scaffold_561 ensembl snoRNA_gene 2019 2243 . + . ID=EPrPRAG00000000049;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_561 ensembl snoRNA 2019 2243 . + . ID=EPrPRAT00000000049;Parent=EPrPRAG00000000049;biotype=snoRNA;logic_name=ncrna_eg scaffold_561 . exon 2019 2243 . + . ID=EPrPRAE00000000049;Parent=EPrPRAT00000000049;constitutive=1;rank=1 scaffold_561 . biological_region 8194 8197 0.999 - . logic_name=eponine scaffold_561 ensembl protein_coding_gene 9324 9797 . - . ID=Phyra86249;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_561000001;logic_name=jgi_phyra1 scaffold_561 ensembl transcript 9324 9797 . - . ID=Phyra86249;Parent=Phyra86249;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_561 . CDS 9324 9797 . - 0 ID=Phyra86249;Parent=Phyra86249;rank=1 scaffold_561 . exon 9324 9797 . - . ID=Phyra86249.1;Parent=Phyra86249;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_559 1 10202 scaffold_559 . repeat_region 338 1093 . - . description=GypsyPi-1c_I-int scaffold_559 . repeat_region 1262 2303 . ? . description=dust scaffold_559 . repeat_region 2304 2871 . - . description=GypsyPi-1c_I-int scaffold_559 . biological_region 3351 3353 0.999 - . logic_name=eponine scaffold_559 . biological_region 3403 3407 0.999 - . logic_name=eponine scaffold_559 . biological_region 3443 3444 0.999 + . logic_name=eponine scaffold_559 . repeat_region 3560 9315 . ? . description=dust scaffold_559 ensembl protein_coding_gene 461 715 . - . ID=Phyra50756;biotype=protein_coding;external_name=gwEuk.559.2.1;logic_name=jgi_phyra1 scaffold_559 ensembl transcript 461 715 . - . ID=Phyra50756;Parent=Phyra50756;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_559 . CDS 461 715 . - 0 ID=Phyra50756;Parent=Phyra50756;rank=1 scaffold_559 . exon 461 715 . - . ID=Phyra50756.1;Parent=Phyra50756;constitutive=1;rank=1 scaffold_559 ensembl protein_coding_gene 2812 3156 . - . ID=Phyra86247;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_559000001;logic_name=jgi_phyra1 scaffold_559 ensembl transcript 2812 3156 . - . ID=Phyra86247;Parent=Phyra86247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_559 . CDS 2812 3156 . - 0 ID=Phyra86247;Parent=Phyra86247;rank=1 scaffold_559 . exon 2812 3156 . - . ID=Phyra86247.1;Parent=Phyra86247;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_562 1 10216 scaffold_562 . repeat_region 257 358 . ? . description=trf scaffold_562 . repeat_region 791 934 . ? . description=trf scaffold_562 . repeat_region 837 874 . ? . description=trf scaffold_562 . repeat_region 855 951 . ? . description=trf scaffold_562 . repeat_region 1330 1379 . ? . description=dust scaffold_562 . repeat_region 1606 1620 . ? . description=dust scaffold_562 . repeat_region 2199 5654 . ? . description=dust scaffold_562 ensembl protein_coding_gene 239 1099 . - . ID=Phyra86250;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_562000001;logic_name=jgi_phyra1 scaffold_562 ensembl transcript 239 1099 . - . ID=Phyra86250;Parent=Phyra86250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_562 . CDS 239 1099 . - 0 ID=Phyra86250;Parent=Phyra86250;rank=1 scaffold_562 . exon 239 1099 . - . ID=Phyra86250.1;Parent=Phyra86250;constitutive=1;rank=1 scaffold_562 . biological_region 8462 8463 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_535 1 10248 scaffold_535 . repeat_region 1 2278 . + . description=GypsyPi-1c_I-int scaffold_535 . repeat_region 2533 2811 . + . description=GypsyPi-1c_I-int scaffold_535 . biological_region 2886 2887 0.999 - . logic_name=eponine scaffold_535 . biological_region 3761 3763 0.999 + . logic_name=eponine scaffold_535 . biological_region 3854 3854 0.999 - . logic_name=eponine scaffold_535 . biological_region 3945 3949 0.999 + . logic_name=eponine scaffold_535 . biological_region 3972 3973 0.999 + . logic_name=eponine scaffold_535 ensembl protein_coding_gene 50 1655 . + . ID=Phyra86205;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_535000001;logic_name=jgi_phyra1 scaffold_535 ensembl transcript 50 1655 . + . ID=Phyra86205;Parent=Phyra86205;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_535 . CDS 50 694 . + 0 ID=Phyra86205;Parent=Phyra86205;rank=1 scaffold_535 . exon 50 694 . + . ID=Phyra86205.1;Parent=Phyra86205;constitutive=1;rank=1 scaffold_535 . CDS 737 946 . + 0 ID=Phyra86205;Parent=Phyra86205;rank=2 scaffold_535 . exon 737 946 . + . ID=Phyra86205.2;Parent=Phyra86205;constitutive=1;rank=2 scaffold_535 . CDS 1308 1655 . + 0 ID=Phyra86205;Parent=Phyra86205;rank=3 scaffold_535 . exon 1308 1655 . + . ID=Phyra86205.3;Parent=Phyra86205;constitutive=1;rank=3 scaffold_535 ensembl protein_coding_gene 2828 4423 . - . ID=Phyra86206;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_535000002;logic_name=jgi_phyra1 scaffold_535 ensembl transcript 2828 4423 . - . ID=Phyra86206;Parent=Phyra86206;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_535 . CDS 2828 4423 . - 0 ID=Phyra86206;Parent=Phyra86206;rank=1 scaffold_535 . exon 2828 4423 . - . ID=Phyra86206.1;Parent=Phyra86206;constitutive=1;rank=1 scaffold_535 . repeat_region 5173 5182 . ? . description=dust scaffold_535 . repeat_region 5363 8141 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_557 1 10262 scaffold_557 . repeat_region 1336 6600 . ? . description=dust scaffold_557 . repeat_region 9309 9576 . - . description=Polinton-1_PI scaffold_557 . repeat_region 9654 9832 . + . description=Polinton-1_PI scaffold_557 ensembl protein_coding_gene 9140 9476 . - . ID=Phyra86243;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_557000001;logic_name=jgi_phyra1 scaffold_557 ensembl transcript 9140 9476 . - . ID=Phyra86243;Parent=Phyra86243;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_557 . CDS 9140 9232 . - 0 ID=Phyra86243;Parent=Phyra86243;rank=2 scaffold_557 . exon 9140 9232 . - . ID=Phyra86243.2;Parent=Phyra86243;constitutive=1;rank=2 scaffold_557 . CDS 9267 9476 . - 0 ID=Phyra86243;Parent=Phyra86243;rank=1 scaffold_557 . exon 9267 9476 . - . ID=Phyra86243.1;Parent=Phyra86243;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_558 1 10272 scaffold_558 . repeat_region 2745 2863 . ? . description=dust scaffold_558 . repeat_region 4751 5901 . ? . description=dust scaffold_558 ensembl protein_coding_gene 55 1542 . + . ID=Phyra50754;biotype=protein_coding;external_name=gwEuk.558.1.1;logic_name=jgi_phyra1 scaffold_558 ensembl transcript 55 1542 . + . ID=Phyra50754;Parent=Phyra50754;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_558 . CDS 55 163 . + 0 ID=Phyra50754;Parent=Phyra50754;rank=1 scaffold_558 . exon 55 163 . + . ID=Phyra50754.1;Parent=Phyra50754;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_558 . CDS 311 1059 . + 0 ID=Phyra50754;Parent=Phyra50754;rank=2 scaffold_558 . exon 311 1059 . + . ID=Phyra50754.2;Parent=Phyra50754;constitutive=1;ensembl_phase=1;rank=2 scaffold_558 . CDS 1300 1542 . + 0 ID=Phyra50754;Parent=Phyra50754;rank=3 scaffold_558 . exon 1300 1542 . + . ID=Phyra50754.3;Parent=Phyra50754;constitutive=1;rank=3 scaffold_558 ensembl protein_coding_gene 4138 7341 . - . ID=Phyra86245;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_558000002;logic_name=jgi_phyra1 scaffold_558 ensembl transcript 4138 7341 . - . ID=Phyra86245;Parent=Phyra86245;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_558 . CDS 4138 4170 . - 0 ID=Phyra86245;Parent=Phyra86245;rank=3 scaffold_558 . exon 4138 4170 . - . ID=Phyra86245.3;Parent=Phyra86245;constitutive=1;rank=3 scaffold_558 . CDS 4259 4738 . - 0 ID=Phyra86245;Parent=Phyra86245;rank=2 scaffold_558 . exon 4259 4738 . - . ID=Phyra86245.2;Parent=Phyra86245;constitutive=1;rank=2 scaffold_558 . CDS 5962 7341 . - 0 ID=Phyra86245;Parent=Phyra86245;rank=1 scaffold_558 . exon 5962 7341 . - . ID=Phyra86245.1;Parent=Phyra86245;constitutive=1;rank=1 scaffold_558 ensembl protein_coding_gene 8546 9919 . - . ID=Phyra86246;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_558000003;logic_name=jgi_phyra1 scaffold_558 ensembl transcript 8546 9919 . - . ID=Phyra86246;Parent=Phyra86246;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_558 . CDS 8546 9919 . - 0 ID=Phyra86246;Parent=Phyra86246;rank=1 scaffold_558 . exon 8546 9919 . - . ID=Phyra86246.1;Parent=Phyra86246;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_573 1 10274 scaffold_573 . repeat_region 1622 1629 . ? . description=dust scaffold_573 . repeat_region 2937 8713 . ? . description=dust scaffold_573 . repeat_region 8714 10274 . ? . description=trf scaffold_573 . repeat_region 8813 8861 . ? . description=trf scaffold_573 . repeat_region 9179 9227 . ? . description=trf scaffold_573 . repeat_region 9544 9592 . ? . description=trf scaffold_573 . repeat_region 9564 10274 . ? . description=trf scaffold_573 . repeat_region 9910 9954 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_556 1 10277 scaffold_556 . biological_region 1231 1232 0.999 - . logic_name=eponine scaffold_556 . biological_region 1285 1287 0.999 + . logic_name=eponine scaffold_556 . biological_region 1717 1717 0.999 - . logic_name=eponine scaffold_556 . repeat_region 3200 8612 . ? . description=dust scaffold_556 ensembl protein_coding_gene 1 2169 . - . ID=Phyra86242;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_556000001;logic_name=jgi_phyra1 scaffold_556 ensembl transcript 1 2169 . - . ID=Phyra86242;Parent=Phyra86242;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_556 . CDS 1 1643 . - 0 ID=Phyra86242;Parent=Phyra86242;rank=3 scaffold_556 . exon 1 1643 . - . ID=Phyra86242.3;Parent=Phyra86242;constitutive=1;ensembl_phase=1;rank=3 scaffold_556 . CDS 1693 2012 . - 0 ID=Phyra86242;Parent=Phyra86242;rank=2 scaffold_556 . exon 1693 2012 . - . ID=Phyra86242.2;Parent=Phyra86242;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_556 . CDS 2132 2169 . - 0 ID=Phyra86242;Parent=Phyra86242;rank=1 scaffold_556 . exon 2132 2169 . - . ID=Phyra86242.1;Parent=Phyra86242;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_553 1 10338 scaffold_553 . biological_region 228 234 0.999 - . logic_name=eponine scaffold_553 . biological_region 288 290 0.999 + . logic_name=eponine scaffold_553 . biological_region 298 301 0.999 - . logic_name=eponine scaffold_553 . repeat_region 4133 4215 . ? . description=dust scaffold_553 . repeat_region 4133 4341 . + . description=(CTG)n scaffold_553 . repeat_region 4619 4752 . ? . description=trf scaffold_553 . repeat_region 4622 4753 . ? . description=trf scaffold_553 . repeat_region 4641 4735 . ? . description=dust scaffold_553 . repeat_region 4818 4848 . ? . description=trf scaffold_553 ensembl protein_coding_gene 23 982 . - . ID=Phyra86233;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_553000001;logic_name=jgi_phyra1 scaffold_553 ensembl transcript 23 982 . - . ID=Phyra86233;Parent=Phyra86233;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_553 . CDS 23 81 . - 0 ID=Phyra86233;Parent=Phyra86233;rank=3 scaffold_553 . exon 23 81 . - . ID=Phyra86233.3;Parent=Phyra86233;constitutive=1;ensembl_phase=1;rank=3 scaffold_553 . CDS 150 365 . - 0 ID=Phyra86233;Parent=Phyra86233;rank=2 scaffold_553 . exon 150 365 . - . ID=Phyra86233.2;Parent=Phyra86233;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_553 . CDS 436 982 . - 0 ID=Phyra86233;Parent=Phyra86233;rank=1 scaffold_553 . exon 436 982 . - . ID=Phyra86233.1;Parent=Phyra86233;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_553 ensembl protein_coding_gene 2203 5392 . - . ID=Phyra86234;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_553000002;logic_name=jgi_phyra1 scaffold_553 ensembl transcript 2203 5392 . - . ID=Phyra86234;Parent=Phyra86234;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_553 . CDS 2203 4992 . - 0 ID=Phyra86234;Parent=Phyra86234;rank=3 scaffold_553 . exon 2203 4992 . - . ID=Phyra86234.3;Parent=Phyra86234;constitutive=1;rank=3 scaffold_553 . CDS 5050 5152 . - 0 ID=Phyra86234;Parent=Phyra86234;rank=2 scaffold_553 . exon 5050 5152 . - . ID=Phyra86234.2;Parent=Phyra86234;constitutive=1;ensembl_phase=2;rank=2 scaffold_553 . CDS 5331 5392 . - 0 ID=Phyra86234;Parent=Phyra86234;rank=1 scaffold_553 . exon 5331 5392 . - . ID=Phyra86234.1;Parent=Phyra86234;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_553 ensembl protein_coding_gene 6549 6917 . - . ID=Phyra86235;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_553000003;logic_name=jgi_phyra1 scaffold_553 ensembl transcript 6549 6917 . - . ID=Phyra86235;Parent=Phyra86235;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_553 . CDS 6549 6917 . - 0 ID=Phyra86235;Parent=Phyra86235;rank=1 scaffold_553 . exon 6549 6917 . - . ID=Phyra86235.1;Parent=Phyra86235;constitutive=1;rank=1 scaffold_553 ensembl protein_coding_gene 8624 10048 . + . ID=Phyra86236;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_553000004;logic_name=jgi_phyra1 scaffold_553 ensembl transcript 8624 10048 . + . ID=Phyra86236;Parent=Phyra86236;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_553 . CDS 8624 10048 . + 0 ID=Phyra86236;Parent=Phyra86236;rank=1 scaffold_553 . exon 8624 10048 . + . ID=Phyra86236.1;Parent=Phyra86236;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_554 1 10339 scaffold_554 . biological_region 2927 2931 0.999 - . logic_name=eponine scaffold_554 . repeat_region 3679 8336 . ? . description=dust scaffold_554 ensembl protein_coding_gene 83 1291 . + . ID=Phyra86237;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_554000001;logic_name=jgi_phyra1 scaffold_554 ensembl transcript 83 1291 . + . ID=Phyra86237;Parent=Phyra86237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_554 . CDS 83 445 . + 0 ID=Phyra86237;Parent=Phyra86237;rank=1 scaffold_554 . exon 83 445 . + . ID=Phyra86237.1;Parent=Phyra86237;constitutive=1;rank=1 scaffold_554 . CDS 521 1291 . + 0 ID=Phyra86237;Parent=Phyra86237;rank=2 scaffold_554 . exon 521 1291 . + . ID=Phyra86237.2;Parent=Phyra86237;constitutive=1;rank=2 scaffold_554 ensembl protein_coding_gene 1483 3262 . - . ID=Phyra86238;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_554000002;logic_name=jgi_phyra1 scaffold_554 ensembl transcript 1483 3262 . - . ID=Phyra86238;Parent=Phyra86238;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_554 . CDS 1483 1980 . - 0 ID=Phyra86238;Parent=Phyra86238;rank=3 scaffold_554 . exon 1483 1980 . - . ID=Phyra86238.3;Parent=Phyra86238;constitutive=1;rank=3 scaffold_554 . CDS 2051 2353 . - 0 ID=Phyra86238;Parent=Phyra86238;rank=2 scaffold_554 . exon 2051 2353 . - . ID=Phyra86238.2;Parent=Phyra86238;constitutive=1;rank=2 scaffold_554 . CDS 2483 3262 . - 0 ID=Phyra86238;Parent=Phyra86238;rank=1 scaffold_554 . exon 2483 3262 . - . ID=Phyra86238.1;Parent=Phyra86238;constitutive=1;rank=1 scaffold_554 ensembl protein_coding_gene 9482 10291 . - . ID=Phyra86239;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_554000003;logic_name=jgi_phyra1 scaffold_554 ensembl transcript 9482 10291 . - . ID=Phyra86239;Parent=Phyra86239;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_554 . CDS 9482 9499 . - 0 ID=Phyra86239;Parent=Phyra86239;rank=2 scaffold_554 . exon 9482 9499 . - . ID=Phyra86239.2;Parent=Phyra86239;constitutive=1;rank=2 scaffold_554 . CDS 9841 10290 . - 0 ID=Phyra86239;Parent=Phyra86239;rank=1 scaffold_554 . exon 9841 10291 . - . ID=Phyra86239.1;Parent=Phyra86239;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_552 1 10347 scaffold_552 . biological_region 543 545 0.999 + . logic_name=eponine scaffold_552 . biological_region 2120 2122 0.999 - . logic_name=eponine scaffold_552 . biological_region 2173 2175 0.999 + . logic_name=eponine scaffold_552 . biological_region 2571 2574 0.999 - . logic_name=eponine scaffold_552 . biological_region 3396 3398 0.999 - . logic_name=eponine scaffold_552 . biological_region 3443 3450 0.999 - . logic_name=eponine scaffold_552 . biological_region 3597 3600 0.999 + . logic_name=eponine scaffold_552 . repeat_region 4884 7708 . ? . description=dust scaffold_552 ensembl protein_coding_gene 3191 3790 . - . ID=Phyra72407;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_552000001;logic_name=jgi_phyra1 scaffold_552 ensembl transcript 3191 3790 . - . ID=Phyra72407;Parent=Phyra72407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_552 . CDS 3191 3790 . - 0 ID=Phyra72407;Parent=Phyra72407;rank=1 scaffold_552 . exon 3191 3790 . - . ID=Phyra72407.1;Parent=Phyra72407;constitutive=1;rank=1 scaffold_552 ensembl protein_coding_gene 329 2821 . + . ID=Phyra86230;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_552000001;logic_name=jgi_phyra1 scaffold_552 ensembl transcript 329 2821 . + . ID=Phyra86230;Parent=Phyra86230;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_552 . CDS 329 2821 . + 0 ID=Phyra86230;Parent=Phyra86230;rank=1 scaffold_552 . exon 329 2821 . + . ID=Phyra86230.1;Parent=Phyra86230;constitutive=1;rank=1 scaffold_552 ensembl protein_coding_gene 9483 10342 . + . ID=Phyra86232;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_552000003;logic_name=jgi_phyra1 scaffold_552 ensembl transcript 9483 10342 . + . ID=Phyra86232;Parent=Phyra86232;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_552 . CDS 9483 10342 . + 0 ID=Phyra86232;Parent=Phyra86232;rank=1 scaffold_552 . exon 9483 10342 . + . ID=Phyra86232.1;Parent=Phyra86232;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_550 1 10351 scaffold_550 ensembl protein_coding_gene 1564 3240 . - . ID=Phyra86225;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_550000001;logic_name=jgi_phyra1 scaffold_550 ensembl transcript 1564 3240 . - . ID=Phyra86225;Parent=Phyra86225;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_550 . CDS 1564 3240 . - 0 ID=Phyra86225;Parent=Phyra86225;rank=1 scaffold_550 . exon 1564 3240 . - . ID=Phyra86225.1;Parent=Phyra86225;constitutive=1;rank=1 scaffold_550 ensembl protein_coding_gene 5905 6318 . + . ID=Phyra86226;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_550000002;logic_name=jgi_phyra1 scaffold_550 ensembl transcript 5905 6318 . + . ID=Phyra86226;Parent=Phyra86226;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_550 . CDS 5905 6318 . + 0 ID=Phyra86226;Parent=Phyra86226;rank=1 scaffold_550 . exon 5905 6318 . + . ID=Phyra86226.1;Parent=Phyra86226;constitutive=1;rank=1 scaffold_550 ensembl protein_coding_gene 6464 8407 . - . ID=Phyra86227;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_550000003;logic_name=jgi_phyra1 scaffold_550 ensembl transcript 6464 8407 . - . ID=Phyra86227;Parent=Phyra86227;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_550 . CDS 6464 6499 . - 0 ID=Phyra86227;Parent=Phyra86227;rank=4 scaffold_550 . exon 6464 6499 . - . ID=Phyra86227.4;Parent=Phyra86227;constitutive=1;rank=4 scaffold_550 . CDS 6578 6634 . - 0 ID=Phyra86227;Parent=Phyra86227;rank=3 scaffold_550 . exon 6578 6634 . - . ID=Phyra86227.3;Parent=Phyra86227;constitutive=1;rank=3 scaffold_550 . CDS 6706 8198 . - 0 ID=Phyra86227;Parent=Phyra86227;rank=2 scaffold_550 . exon 6706 8198 . - . ID=Phyra86227.2;Parent=Phyra86227;constitutive=1;ensembl_phase=1;rank=2 scaffold_550 . CDS 8269 8407 . - 0 ID=Phyra86227;Parent=Phyra86227;rank=1 scaffold_550 . exon 8269 8407 . - . ID=Phyra86227.1;Parent=Phyra86227;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_568 1 10351 scaffold_568 . repeat_region 587 628 . ? . description=trf scaffold_568 . repeat_region 783 823 . ? . description=trf scaffold_568 . repeat_region 1329 7182 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_584 1 10364 scaffold_584 . biological_region 413 415 0.999 + . logic_name=eponine scaffold_584 . biological_region 526 530 0.999 - . logic_name=eponine scaffold_584 . repeat_region 1000 1527 . ? . description=dust scaffold_584 . repeat_region 2024 2055 . ? . description=dust scaffold_584 . repeat_region 2400 2449 . ? . description=dust scaffold_584 . repeat_region 3808 8721 . ? . description=dust scaffold_584 ensembl protein_coding_gene 54 887 . - . ID=Phyra86276;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_584000001;logic_name=jgi_phyra1 scaffold_584 ensembl transcript 54 887 . - . ID=Phyra86276;Parent=Phyra86276;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_584 . CDS 54 887 . - 0 ID=Phyra86276;Parent=Phyra86276;rank=1 scaffold_584 . exon 54 887 . - . ID=Phyra86276.1;Parent=Phyra86276;constitutive=1;rank=1 scaffold_584 ensembl protein_coding_gene 8829 10241 . + . ID=Phyra51168;biotype=protein_coding;external_name=gwEuk.584.4.1;logic_name=jgi_phyra1 scaffold_584 ensembl transcript 8829 10241 . + . ID=Phyra51168;Parent=Phyra51168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_584 . CDS 8829 9218 . + 0 ID=Phyra51168;Parent=Phyra51168;rank=1 scaffold_584 . exon 8829 9218 . + . ID=Phyra51168.1;Parent=Phyra51168;constitutive=1;rank=1 scaffold_584 . CDS 9286 9899 . + 0 ID=Phyra51168;Parent=Phyra51168;rank=2 scaffold_584 . exon 9286 9899 . + . ID=Phyra51168.2;Parent=Phyra51168;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_584 . CDS 9975 10070 . + 0 ID=Phyra51168;Parent=Phyra51168;rank=3 scaffold_584 . exon 9975 10070 . + . ID=Phyra51168.3;Parent=Phyra51168;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_584 . CDS 10136 10241 . + 0 ID=Phyra51168;Parent=Phyra51168;rank=4 scaffold_584 . exon 10136 10241 . + . ID=Phyra51168.4;Parent=Phyra51168;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_547 1 10417 scaffold_547 . biological_region 820 820 0.999 + . logic_name=eponine scaffold_547 . biological_region 1238 1242 0.999 - . logic_name=eponine scaffold_547 . repeat_region 1588 6128 . ? . description=dust scaffold_547 ensembl protein_coding_gene 688 1335 . + . ID=Phyra50629;biotype=protein_coding;external_name=gwEuk.547.1.1;logic_name=jgi_phyra1 scaffold_547 ensembl transcript 688 1335 . + . ID=Phyra50629;Parent=Phyra50629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_547 . CDS 688 1335 . + 0 ID=Phyra50629;Parent=Phyra50629;rank=1 scaffold_547 . exon 688 1335 . + . ID=Phyra50629.1;Parent=Phyra50629;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_548 1 10447 scaffold_548 . repeat_region 1479 1508 . ? . description=trf scaffold_548 . repeat_region 1983 7138 . ? . description=dust scaffold_548 . biological_region 8612 8617 0.999 - . logic_name=eponine scaffold_548 . biological_region 8669 8672 0.999 + . logic_name=eponine scaffold_548 . biological_region 8903 8907 0.999 + . logic_name=eponine scaffold_548 . biological_region 9073 9077 0.999 - . logic_name=eponine scaffold_548 ensembl protein_coding_gene 8431 9471 . + . ID=Phyra86223;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_548000001;logic_name=jgi_phyra1 scaffold_548 ensembl transcript 8431 9471 . + . ID=Phyra86223;Parent=Phyra86223;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_548 . CDS 8431 9471 . + 0 ID=Phyra86223;Parent=Phyra86223;rank=1 scaffold_548 . exon 8431 9471 . + . ID=Phyra86223.1;Parent=Phyra86223;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_546 1 10452 scaffold_546 . repeat_region 1248 1284 . ? . description=trf scaffold_546 . biological_region 1354 1357 0.999 - . logic_name=eponine scaffold_546 . repeat_region 1916 2162 . ? . description=dust scaffold_546 . repeat_region 4163 6885 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_545 1 10456 scaffold_545 . repeat_region 1 1251 . + . description=GypsyPi-1c_I-int scaffold_545 . biological_region 70 71 0.999 + . logic_name=eponine scaffold_545 . biological_region 156 159 0.999 + . logic_name=eponine scaffold_545 . repeat_region 1266 2143 . ? . description=dust scaffold_545 . repeat_region 2144 2852 . + . description=GypsyPi-1c_I-int scaffold_545 . biological_region 2945 2947 0.999 - . logic_name=eponine scaffold_545 . biological_region 3210 3215 0.999 + . logic_name=eponine scaffold_545 . biological_region 3289 3291 0.999 + . logic_name=eponine scaffold_545 . biological_region 3311 3317 0.999 + . logic_name=eponine scaffold_545 . biological_region 3325 3333 0.999 - . logic_name=eponine scaffold_545 . repeat_region 3440 9298 . ? . description=dust scaffold_545 ensembl protein_coding_gene 97 2959 . + . ID=Phyra86221;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_545000001;logic_name=jgi_phyra1 scaffold_545 ensembl transcript 97 2959 . + . ID=Phyra86221;Parent=Phyra86221;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_545 . CDS 97 1173 . + 0 ID=Phyra86221;Parent=Phyra86221;rank=1 scaffold_545 . exon 97 1173 . + . ID=Phyra86221.1;Parent=Phyra86221;constitutive=1;rank=1 scaffold_545 . CDS 2181 2262 . + 0 ID=Phyra86221;Parent=Phyra86221;rank=2 scaffold_545 . exon 2181 2262 . + . ID=Phyra86221.2;Parent=Phyra86221;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_545 . CDS 2384 2547 . + 0 ID=Phyra86221;Parent=Phyra86221;rank=3 scaffold_545 . exon 2384 2547 . + . ID=Phyra86221.3;Parent=Phyra86221;constitutive=1;ensembl_phase=1;rank=3 scaffold_545 . CDS 2864 2959 . + 0 ID=Phyra86221;Parent=Phyra86221;rank=4 scaffold_545 . exon 2864 2959 . + . ID=Phyra86221.4;Parent=Phyra86221;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_542 1 10464 scaffold_542 . biological_region 161 162 0.999 + . logic_name=eponine scaffold_542 . repeat_region 769 1131 . - . description=GypsyPi-1c_I-int scaffold_542 . repeat_region 1132 5547 . ? . description=dust scaffold_542 ensembl protein_coding_gene 890 1132 . - . ID=Phyra50622;biotype=protein_coding;external_name=gwEuk.542.2.1;logic_name=jgi_phyra1 scaffold_542 ensembl transcript 890 1132 . - . ID=Phyra50622;Parent=Phyra50622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_542 . CDS 890 1132 . - 0 ID=Phyra50622;Parent=Phyra50622;rank=1 scaffold_542 . exon 890 1132 . - . ID=Phyra50622.1;Parent=Phyra50622;constitutive=1;rank=1 scaffold_542 ensembl protein_coding_gene 7077 7589 . + . ID=Phyra86213;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_542000001;logic_name=jgi_phyra1 scaffold_542 ensembl transcript 7077 7589 . + . ID=Phyra86213;Parent=Phyra86213;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_542 . CDS 7077 7589 . + 0 ID=Phyra86213;Parent=Phyra86213;rank=1 scaffold_542 . exon 7077 7589 . + . ID=Phyra86213.1;Parent=Phyra86213;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_543 1 10470 scaffold_543 . repeat_region 1426 3897 . ? . description=dust scaffold_543 ensembl protein_coding_gene 32 1048 . - . ID=Phyra86214;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_543000001;logic_name=jgi_phyra1 scaffold_543 ensembl transcript 32 1048 . - . ID=Phyra86214;Parent=Phyra86214;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_543 . CDS 32 900 . - 0 ID=Phyra86214;Parent=Phyra86214;rank=2 scaffold_543 . exon 32 900 . - . ID=Phyra86214.2;Parent=Phyra86214;constitutive=1;ensembl_phase=1;rank=2 scaffold_543 . CDS 958 1048 . - 0 ID=Phyra86214;Parent=Phyra86214;rank=1 scaffold_543 . exon 958 1048 . - . ID=Phyra86214.1;Parent=Phyra86214;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_543 ensembl protein_coding_gene 4156 4972 . - . ID=Phyra86215;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_543000002;logic_name=jgi_phyra1 scaffold_543 ensembl transcript 4156 4972 . - . ID=Phyra86215;Parent=Phyra86215;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_543 . CDS 4156 4557 . - 0 ID=Phyra86215;Parent=Phyra86215;rank=2 scaffold_543 . exon 4156 4557 . - . ID=Phyra86215.2;Parent=Phyra86215;constitutive=1;rank=2 scaffold_543 . CDS 4637 4972 . - 0 ID=Phyra86215;Parent=Phyra86215;rank=1 scaffold_543 . exon 4637 4972 . - . ID=Phyra86215.1;Parent=Phyra86215;constitutive=1;rank=1 scaffold_543 ensembl protein_coding_gene 5091 6401 . - . ID=Phyra86216;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_543000003;logic_name=jgi_phyra1 scaffold_543 ensembl transcript 5091 6401 . - . ID=Phyra86216;Parent=Phyra86216;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_543 . CDS 5091 6401 . - 0 ID=Phyra86216;Parent=Phyra86216;rank=1 scaffold_543 . exon 5091 6401 . - . ID=Phyra86216.1;Parent=Phyra86216;constitutive=1;rank=1 scaffold_543 . biological_region 7602 7603 0.999 - . logic_name=eponine scaffold_543 . repeat_region 9342 9411 . ? . description=trf scaffold_543 ensembl protein_coding_gene 7501 9186 . + . ID=Phyra86217;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_543000004;logic_name=jgi_phyra1 scaffold_543 ensembl transcript 7501 9186 . + . ID=Phyra86217;Parent=Phyra86217;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_543 . CDS 7501 8886 . + 0 ID=Phyra86217;Parent=Phyra86217;rank=1 scaffold_543 . exon 7501 8886 . + . ID=Phyra86217.1;Parent=Phyra86217;constitutive=1;rank=1 scaffold_543 . CDS 8961 9021 . + 0 ID=Phyra86217;Parent=Phyra86217;rank=2 scaffold_543 . exon 8961 9021 . + . ID=Phyra86217.2;Parent=Phyra86217;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_543 . CDS 9095 9186 . + 0 ID=Phyra86217;Parent=Phyra86217;rank=3 scaffold_543 . exon 9095 9186 . + . ID=Phyra86217.3;Parent=Phyra86217;constitutive=1;ensembl_phase=1;rank=3 scaffold_543 ensembl protein_coding_gene 9387 10163 . + . ID=Phyra86218;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_543000005;logic_name=jgi_phyra1 scaffold_543 ensembl transcript 9387 10163 . + . ID=Phyra86218;Parent=Phyra86218;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_543 . CDS 9387 10163 . + 0 ID=Phyra86218;Parent=Phyra86218;rank=1 scaffold_543 . exon 9387 10163 . + . ID=Phyra86218.1;Parent=Phyra86218;constitutive=1;rank=1 scaffold_543 ensembl protein_coding_gene 10239 10457 . - . ID=Phyra97186;biotype=protein_coding;external_name=C_scaffold_543000002;logic_name=jgi_phyra1 scaffold_543 ensembl transcript 10239 10457 . - . ID=Phyra97186;Parent=Phyra97186;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_543 . CDS 10239 10457 . - 0 ID=Phyra97186;Parent=Phyra97186;rank=1 scaffold_543 . exon 10239 10457 . - . ID=Phyra97186.1;Parent=Phyra97186;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_541 1 10534 scaffold_541 . biological_region 502 503 0.999 - . logic_name=eponine scaffold_541 . repeat_region 1272 1674 . ? . description=dust scaffold_541 . repeat_region 3187 3214 . ? . description=dust scaffold_541 . repeat_region 3188 3214 . ? . description=trf scaffold_541 . repeat_region 4131 9334 . ? . description=dust scaffold_541 ensembl protein_coding_gene 99 1169 . - . ID=Phyra86212;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_541000001;logic_name=jgi_phyra1 scaffold_541 ensembl transcript 99 1169 . - . ID=Phyra86212;Parent=Phyra86212;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_541 . CDS 99 1169 . - 0 ID=Phyra86212;Parent=Phyra86212;rank=1 scaffold_541 . exon 99 1169 . - . ID=Phyra86212.1;Parent=Phyra86212;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_538 1 10548 scaffold_538 . repeat_region 1490 2724 . ? . description=dust scaffold_538 . repeat_region 3791 6652 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_549 1 10568 scaffold_549 . repeat_region 2111 2139 . ? . description=trf scaffold_549 . repeat_region 3454 4865 . ? . description=dust scaffold_549 ensembl protein_coding_gene 5074 5501 . + . ID=Phyra86224;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_549000001;logic_name=jgi_phyra1 scaffold_549 ensembl transcript 5074 5501 . + . ID=Phyra86224;Parent=Phyra86224;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_549 . CDS 5074 5285 . + 0 ID=Phyra86224;Parent=Phyra86224;rank=1 scaffold_549 . exon 5074 5285 . + . ID=Phyra86224.1;Parent=Phyra86224;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_549 . CDS 5345 5501 . + 0 ID=Phyra86224;Parent=Phyra86224;rank=2 scaffold_549 . exon 5345 5501 . + . ID=Phyra86224.2;Parent=Phyra86224;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_537 1 10569 scaffold_537 . repeat_region 2252 2299 . ? . description=trf scaffold_537 . biological_region 4455 4458 0.999 + . logic_name=eponine scaffold_537 . repeat_region 4895 5654 . ? . description=dust scaffold_537 ensembl protein_coding_gene 1 7464 . + . ID=Phyra86209;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_537000001;logic_name=jgi_phyra1 scaffold_537 ensembl transcript 1 7464 . + . ID=Phyra86209;Parent=Phyra86209;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_537 . CDS 1 4825 . + 0 ID=Phyra86209;Parent=Phyra86209;rank=1 scaffold_537 . exon 1 4825 . + . ID=Phyra86209.1;Parent=Phyra86209;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_537 . CDS 5660 7464 . + 0 ID=Phyra86209;Parent=Phyra86209;rank=2 scaffold_537 . exon 5660 7464 . + . ID=Phyra86209.2;Parent=Phyra86209;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_544 1 10582 scaffold_544 . repeat_region 1019 1658 . ? . description=dust scaffold_544 . repeat_region 3336 3343 . ? . description=dust scaffold_544 . repeat_region 3835 3932 . ? . description=trf scaffold_544 . repeat_region 4083 4132 . ? . description=dust scaffold_544 . biological_region 4816 4818 0.999 - . logic_name=eponine scaffold_544 . repeat_region 5083 5132 . ? . description=dust scaffold_544 ensembl protein_coding_gene 2212 2685 . + . ID=Phyra86219;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_544000001;logic_name=jgi_phyra1 scaffold_544 ensembl transcript 2212 2685 . + . ID=Phyra86219;Parent=Phyra86219;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_544 . CDS 2212 2400 . + 0 ID=Phyra86219;Parent=Phyra86219;rank=1 scaffold_544 . exon 2212 2400 . + . ID=Phyra86219.1;Parent=Phyra86219;constitutive=1;rank=1 scaffold_544 . CDS 2569 2685 . + 0 ID=Phyra86219;Parent=Phyra86219;rank=2 scaffold_544 . exon 2569 2685 . + . ID=Phyra86219.2;Parent=Phyra86219;constitutive=1;rank=2 scaffold_544 ensembl protein_coding_gene 3468 5328 . + . ID=Phyra86220;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_544000002;logic_name=jgi_phyra1 scaffold_544 ensembl transcript 3468 5328 . + . ID=Phyra86220;Parent=Phyra86220;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_544 . CDS 3468 3980 . + 0 ID=Phyra86220;Parent=Phyra86220;rank=1 scaffold_544 . exon 3468 3980 . + . ID=Phyra86220.1;Parent=Phyra86220;constitutive=1;rank=1 scaffold_544 . CDS 4253 5035 . + 0 ID=Phyra86220;Parent=Phyra86220;rank=2 scaffold_544 . exon 4253 5035 . + . ID=Phyra86220.2;Parent=Phyra86220;constitutive=1;rank=2 scaffold_544 . CDS 5182 5328 . + 0 ID=Phyra86220;Parent=Phyra86220;rank=3 scaffold_544 . exon 5182 5328 . + . ID=Phyra86220.3;Parent=Phyra86220;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_536 1 10592 scaffold_536 . repeat_region 103 144 . ? . description=trf scaffold_536 . repeat_region 2062 2092 . ? . description=trf scaffold_536 . repeat_region 4492 8457 . ? . description=dust scaffold_536 ensembl protein_coding_gene 238 3861 . - . ID=Phyra86207;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_536000001;logic_name=jgi_phyra1 scaffold_536 ensembl transcript 238 3861 . - . ID=Phyra86207;Parent=Phyra86207;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_536 . CDS 238 1670 . - 0 ID=Phyra86207;Parent=Phyra86207;rank=4 scaffold_536 . exon 238 1670 . - . ID=Phyra86207.4;Parent=Phyra86207;constitutive=1;ensembl_phase=1;rank=4 scaffold_536 . CDS 1762 2259 . - 0 ID=Phyra86207;Parent=Phyra86207;rank=3 scaffold_536 . exon 1762 2259 . - . ID=Phyra86207.3;Parent=Phyra86207;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_536 . CDS 2317 2578 . - 0 ID=Phyra86207;Parent=Phyra86207;rank=2 scaffold_536 . exon 2317 2578 . - . ID=Phyra86207.2;Parent=Phyra86207;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_536 . CDS 2605 3861 . - 0 ID=Phyra86207;Parent=Phyra86207;rank=1 scaffold_536 . exon 2605 3861 . - . ID=Phyra86207.1;Parent=Phyra86207;constitutive=1;rank=1 scaffold_536 . biological_region 9625 9628 0.999 - . logic_name=eponine scaffold_536 . biological_region 9645 9650 0.999 - . logic_name=eponine scaffold_536 . biological_region 9829 9830 0.999 + . logic_name=eponine scaffold_536 . biological_region 10127 10129 0.999 + . logic_name=eponine scaffold_536 . biological_region 10155 10158 0.999 + . logic_name=eponine scaffold_536 ensembl protein_coding_gene 8741 9698 . + . ID=Phyra86208;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_536000002;logic_name=jgi_phyra1 scaffold_536 ensembl transcript 8741 9698 . + . ID=Phyra86208;Parent=Phyra86208;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_536 . CDS 8741 9339 . + 0 ID=Phyra86208;Parent=Phyra86208;rank=1 scaffold_536 . exon 8741 9339 . + . ID=Phyra86208.1;Parent=Phyra86208;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_536 . CDS 9416 9698 . + 0 ID=Phyra86208;Parent=Phyra86208;rank=2 scaffold_536 . exon 9416 9698 . + . ID=Phyra86208.2;Parent=Phyra86208;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_540 1 10616 scaffold_540 . repeat_region 679 728 . ? . description=dust scaffold_540 . biological_region 3345 3345 0.999 + . logic_name=eponine scaffold_540 . repeat_region 3551 7487 . ? . description=dust scaffold_540 ensembl protein_coding_gene 7975 9033 . + . ID=Phyra86211;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_540000001;logic_name=jgi_phyra1 scaffold_540 ensembl transcript 7975 9033 . + . ID=Phyra86211;Parent=Phyra86211;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_540 . CDS 7975 8154 . + 0 ID=Phyra86211;Parent=Phyra86211;rank=1 scaffold_540 . exon 7975 8154 . + . ID=Phyra86211.1;Parent=Phyra86211;constitutive=1;rank=1 scaffold_540 . CDS 8250 8936 . + 0 ID=Phyra86211;Parent=Phyra86211;rank=2 scaffold_540 . exon 8250 8936 . + . ID=Phyra86211.2;Parent=Phyra86211;constitutive=1;rank=2 scaffold_540 . CDS 8989 9033 . + 0 ID=Phyra86211;Parent=Phyra86211;rank=3 scaffold_540 . exon 8989 9033 . + . ID=Phyra86211.3;Parent=Phyra86211;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_533 1 10649 scaffold_533 . biological_region 616 618 0.999 + . logic_name=eponine scaffold_533 . biological_region 1037 1043 0.999 - . logic_name=eponine scaffold_533 . repeat_region 1151 2178 . ? . description=dust scaffold_533 . repeat_region 2393 2614 . - . description=GypsyPi-1c_I-int scaffold_533 . repeat_region 2901 3656 . - . description=GypsyPi-1c_I-int scaffold_533 . repeat_region 3683 9384 . ? . description=dust scaffold_533 ensembl protein_coding_gene 3024 3278 . - . ID=Phyra50512;biotype=protein_coding;external_name=gwEuk.533.2.1;logic_name=jgi_phyra1 scaffold_533 ensembl transcript 3024 3278 . - . ID=Phyra50512;Parent=Phyra50512;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_533 . CDS 3024 3278 . - 0 ID=Phyra50512;Parent=Phyra50512;rank=1 scaffold_533 . exon 3024 3278 . - . ID=Phyra50512.1;Parent=Phyra50512;constitutive=1;rank=1 scaffold_533 ensembl protein_coding_gene 9734 10429 . + . ID=Phyra86202;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_533000001;logic_name=jgi_phyra1 scaffold_533 ensembl transcript 9734 10429 . + . ID=Phyra86202;Parent=Phyra86202;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_533 . CDS 9734 10237 . + 0 ID=Phyra86202;Parent=Phyra86202;rank=1 scaffold_533 . exon 9734 10237 . + . ID=Phyra86202.1;Parent=Phyra86202;constitutive=1;rank=1 scaffold_533 . CDS 10358 10429 . + 0 ID=Phyra86202;Parent=Phyra86202;rank=2 scaffold_533 . exon 10358 10429 . + . ID=Phyra86202.2;Parent=Phyra86202;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_532 1 10654 scaffold_532 . biological_region 1883 1885 0.999 + . logic_name=eponine scaffold_532 . biological_region 1919 1922 0.999 - . logic_name=eponine scaffold_532 . biological_region 4794 4797 0.999 + . logic_name=eponine scaffold_532 . repeat_region 5304 6043 . ? . description=dust scaffold_532 ensembl protein_coding_gene 1838 2701 . + . ID=Phyra86201;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_532000001;logic_name=jgi_phyra1 scaffold_532 ensembl transcript 1838 2701 . + . ID=Phyra86201;Parent=Phyra86201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_532 . CDS 1838 2701 . + 0 ID=Phyra86201;Parent=Phyra86201;rank=1 scaffold_532 . exon 1838 2701 . + . ID=Phyra86201.1;Parent=Phyra86201;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_534 1 10654 scaffold_534 . biological_region 727 731 0.999 - . logic_name=eponine scaffold_534 . repeat_region 4260 8932 . ? . description=dust scaffold_534 ensembl protein_coding_gene 52 3896 . + . ID=Phyra86203;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_534000001;logic_name=jgi_phyra1 scaffold_534 ensembl transcript 52 3896 . + . ID=Phyra86203;Parent=Phyra86203;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_534 . CDS 52 907 . + 0 ID=Phyra86203;Parent=Phyra86203;rank=1 scaffold_534 . exon 52 907 . + . ID=Phyra86203.1;Parent=Phyra86203;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_534 . CDS 1036 3896 . + 0 ID=Phyra86203;Parent=Phyra86203;rank=2 scaffold_534 . exon 1036 3896 . + . ID=Phyra86203.2;Parent=Phyra86203;constitutive=1;ensembl_phase=1;rank=2 scaffold_534 ensembl protein_coding_gene 9603 10622 . + . ID=Phyra72405;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_534000001;logic_name=jgi_phyra1 scaffold_534 ensembl transcript 9603 10622 . + . ID=Phyra72405;Parent=Phyra72405;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_534 . CDS 9603 10622 . + 0 ID=Phyra72405;Parent=Phyra72405;rank=1 scaffold_534 . exon 9603 10622 . + . ID=Phyra72405.1;Parent=Phyra72405;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_531 1 10660 scaffold_531 . repeat_region 66 89 . ? . description=trf scaffold_531 . repeat_region 66 89 . ? . description=dust scaffold_531 . biological_region 551 554 0.999 + . logic_name=eponine scaffold_531 . biological_region 593 598 0.999 + . logic_name=eponine scaffold_531 . biological_region 613 614 0.999 + . logic_name=eponine scaffold_531 . biological_region 622 624 0.999 - . logic_name=eponine scaffold_531 . biological_region 634 639 0.999 + . logic_name=eponine scaffold_531 . biological_region 727 728 0.999 - . logic_name=eponine scaffold_531 . repeat_region 914 6231 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_539 1 10679 scaffold_539 . biological_region 1286 1288 0.999 - . logic_name=eponine scaffold_539 . repeat_region 1482 1992 . ? . description=dust scaffold_539 . biological_region 2683 2685 0.999 + . logic_name=eponine scaffold_539 . biological_region 3233 3235 0.999 - . logic_name=eponine scaffold_539 . repeat_region 4053 5056 . ? . description=dust scaffold_539 . repeat_region 9894 9973 . ? . description=trf scaffold_539 ensembl protein_coding_gene 6174 6431 . - . ID=Phyra50525;biotype=protein_coding;external_name=gwEuk.539.1.1;logic_name=jgi_phyra1 scaffold_539 ensembl transcript 6174 6431 . - . ID=Phyra50525;Parent=Phyra50525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_539 . CDS 6174 6431 . - 0 ID=Phyra50525;Parent=Phyra50525;rank=1 scaffold_539 . exon 6174 6431 . - . ID=Phyra50525.1;Parent=Phyra50525;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_529 1 10690 scaffold_529 . repeat_region 901 908 . ? . description=dust scaffold_529 . repeat_region 984 995 . ? . description=dust scaffold_529 . biological_region 3904 3909 0.999 + . logic_name=eponine scaffold_529 . repeat_region 4321 4729 . ? . description=dust scaffold_529 ensembl protein_coding_gene 1111 1893 . - . ID=Phyra86199;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_529000001;logic_name=jgi_phyra1 scaffold_529 ensembl transcript 1111 1893 . - . ID=Phyra86199;Parent=Phyra86199;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_529 . CDS 1111 1893 . - 0 ID=Phyra86199;Parent=Phyra86199;rank=1 scaffold_529 . exon 1111 1893 . - . ID=Phyra86199.1;Parent=Phyra86199;constitutive=1;rank=1 scaffold_529 . repeat_region 6022 6173 . - . description=GypsyPi-1c_LTR ##gff-version 3 ##sequence-region scaffold_528 1 10703 scaffold_528 . repeat_region 961 5082 . ? . description=dust scaffold_528 . repeat_region 5183 5211 . ? . description=trf scaffold_528 . biological_region 10256 10262 0.999 + . logic_name=eponine scaffold_528 . biological_region 10299 10303 0.999 - . logic_name=eponine scaffold_528 ensembl protein_coding_gene 7547 10328 . + . ID=Phyra86198;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_528000001;logic_name=jgi_phyra1 scaffold_528 ensembl transcript 7547 10328 . + . ID=Phyra86198;Parent=Phyra86198;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_528 . CDS 7547 7549 . + 0 ID=Phyra86198;Parent=Phyra86198;rank=1 scaffold_528 . exon 7547 7549 . + . ID=Phyra86198.1;Parent=Phyra86198;constitutive=1;rank=1 scaffold_528 . CDS 7640 7643 . + 0 ID=Phyra86198;Parent=Phyra86198;rank=2 scaffold_528 . exon 7640 7643 . + . ID=Phyra86198.2;Parent=Phyra86198;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_528 . CDS 7826 8040 . + 0 ID=Phyra86198;Parent=Phyra86198;rank=3 scaffold_528 . exon 7826 8040 . + . ID=Phyra86198.3;Parent=Phyra86198;constitutive=1;ensembl_phase=1;rank=3 scaffold_528 . CDS 8072 8536 . + 0 ID=Phyra86198;Parent=Phyra86198;rank=4 scaffold_528 . exon 8072 8536 . + . ID=Phyra86198.4;Parent=Phyra86198;constitutive=1;rank=4 scaffold_528 . CDS 9490 9645 . + 0 ID=Phyra86198;Parent=Phyra86198;rank=5 scaffold_528 . exon 9490 9645 . + . ID=Phyra86198.5;Parent=Phyra86198;constitutive=1;rank=5 scaffold_528 . CDS 10245 10328 . + 0 ID=Phyra86198;Parent=Phyra86198;rank=6 scaffold_528 . exon 10245 10328 . + . ID=Phyra86198.6;Parent=Phyra86198;constitutive=1;rank=6 ##gff-version 3 ##sequence-region scaffold_527 1 10746 scaffold_527 . repeat_region 2235 2367 . - . description=GypsyPi-1c_LTR scaffold_527 . biological_region 2804 2813 0.999 + . logic_name=eponine scaffold_527 . biological_region 2822 2826 0.999 - . logic_name=eponine scaffold_527 . biological_region 2925 2927 0.999 - . logic_name=eponine scaffold_527 . biological_region 3672 3672 0.999 + . logic_name=eponine scaffold_527 . repeat_region 4007 7000 . ? . description=dust scaffold_527 ensembl protein_coding_gene 1380 1796 . - . ID=Phyra86195;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_527000001;logic_name=jgi_phyra1 scaffold_527 ensembl transcript 1380 1796 . - . ID=Phyra86195;Parent=Phyra86195;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_527 . CDS 1380 1796 . - 0 ID=Phyra86195;Parent=Phyra86195;rank=1 scaffold_527 . exon 1380 1796 . - . ID=Phyra86195.1;Parent=Phyra86195;constitutive=1;rank=1 scaffold_527 ensembl protein_coding_gene 2715 3545 . + . ID=Phyra86196;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_527000002;logic_name=jgi_phyra1 scaffold_527 ensembl transcript 2715 3545 . + . ID=Phyra86196;Parent=Phyra86196;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_527 . CDS 2715 3545 . + 0 ID=Phyra86196;Parent=Phyra86196;rank=1 scaffold_527 . exon 2715 3545 . + . ID=Phyra86196.1;Parent=Phyra86196;constitutive=1;rank=1 scaffold_527 ensembl protein_coding_gene 7226 8812 . - . ID=Phyra86197;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_527000003;logic_name=jgi_phyra1 scaffold_527 ensembl transcript 7226 8812 . - . ID=Phyra86197;Parent=Phyra86197;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_527 . CDS 7226 8812 . - 0 ID=Phyra86197;Parent=Phyra86197;rank=1 scaffold_527 . exon 7226 8812 . - . ID=Phyra86197.1;Parent=Phyra86197;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_521 1 10754 scaffold_521 . repeat_region 312 344 . ? . description=trf scaffold_521 . biological_region 550 553 0.999 - . logic_name=eponine scaffold_521 . biological_region 3005 3006 0.999 + . logic_name=eponine scaffold_521 . biological_region 3042 3044 0.999 + . logic_name=eponine scaffold_521 ensembl protein_coding_gene 2113 3126 . + . ID=Phyra50438;biotype=protein_coding;external_name=gwEuk.521.2.1;logic_name=jgi_phyra1 scaffold_521 ensembl transcript 2113 3126 . + . ID=Phyra50438;Parent=Phyra50438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_521 . CDS 2113 2157 . + 0 ID=Phyra50438;Parent=Phyra50438;rank=1 scaffold_521 . exon 2113 2157 . + . ID=Phyra50438.1;Parent=Phyra50438;constitutive=1;rank=1 scaffold_521 . CDS 2223 2377 . + 0 ID=Phyra50438;Parent=Phyra50438;rank=2 scaffold_521 . exon 2223 2377 . + . ID=Phyra50438.2;Parent=Phyra50438;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_521 . CDS 2448 2522 . + 0 ID=Phyra50438;Parent=Phyra50438;rank=3 scaffold_521 . exon 2448 2522 . + . ID=Phyra50438.3;Parent=Phyra50438;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_521 . CDS 2594 2709 . + 0 ID=Phyra50438;Parent=Phyra50438;rank=4 scaffold_521 . exon 2594 2709 . + . ID=Phyra50438.4;Parent=Phyra50438;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_521 . CDS 2771 3126 . + 0 ID=Phyra50438;Parent=Phyra50438;rank=5 scaffold_521 . exon 2771 3126 . + . ID=Phyra50438.5;Parent=Phyra50438;constitutive=1;ensembl_phase=1;rank=5 scaffold_521 ensembl protein_coding_gene 3630 4646 . - . ID=Phyra86187;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_521000002;logic_name=jgi_phyra1 scaffold_521 ensembl transcript 3630 4646 . - . ID=Phyra86187;Parent=Phyra86187;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_521 . CDS 3630 4646 . - 0 ID=Phyra86187;Parent=Phyra86187;rank=1 scaffold_521 . exon 3630 4646 . - . ID=Phyra86187.1;Parent=Phyra86187;constitutive=1;rank=1 scaffold_521 ensembl protein_coding_gene 5481 6470 . - . ID=Phyra72404;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_521000001;logic_name=jgi_phyra1 scaffold_521 ensembl transcript 5481 6470 . - . ID=Phyra72404;Parent=Phyra72404;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_521 . CDS 5481 6470 . - 0 ID=Phyra72404;Parent=Phyra72404;rank=1 scaffold_521 . exon 5481 6470 . - . ID=Phyra72404.1;Parent=Phyra72404;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_525 1 10788 scaffold_525 . repeat_region 1159 2887 . ? . description=dust scaffold_525 . repeat_region 4508 4515 . ? . description=dust scaffold_525 . biological_region 5979 5980 0.999 - . logic_name=eponine scaffold_525 . biological_region 6589 6592 0.999 - . logic_name=eponine scaffold_525 . biological_region 6692 6698 0.999 - . logic_name=eponine scaffold_525 . biological_region 6752 6752 0.999 + . logic_name=eponine scaffold_525 . repeat_region 9364 9641 . - . description=GypsyPi-1c_I-int scaffold_525 . repeat_region 9961 10649 . - . description=GypsyPi-1c_I-int scaffold_525 ensembl protein_coding_gene 10017 10271 . - . ID=Phyra50440;biotype=protein_coding;external_name=gwEuk.525.2.1;logic_name=jgi_phyra1 scaffold_525 ensembl transcript 10017 10271 . - . ID=Phyra50440;Parent=Phyra50440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_525 . CDS 10017 10271 . - 0 ID=Phyra50440;Parent=Phyra50440;rank=1 scaffold_525 . exon 10017 10271 . - . ID=Phyra50440.1;Parent=Phyra50440;constitutive=1;rank=1 scaffold_525 ensembl protein_coding_gene 6038 9347 . + . ID=Phyra86192;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_525000001;logic_name=jgi_phyra1 scaffold_525 ensembl transcript 6038 9347 . + . ID=Phyra86192;Parent=Phyra86192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_525 . CDS 6038 6097 . + 0 ID=Phyra86192;Parent=Phyra86192;rank=1 scaffold_525 . exon 6038 6097 . + . ID=Phyra86192.1;Parent=Phyra86192;constitutive=1;rank=1 scaffold_525 . CDS 6476 7520 . + 0 ID=Phyra86192;Parent=Phyra86192;rank=2 scaffold_525 . exon 6476 7520 . + . ID=Phyra86192.2;Parent=Phyra86192;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_525 . CDS 7650 7728 . + 0 ID=Phyra86192;Parent=Phyra86192;rank=3 scaffold_525 . exon 7650 7728 . + . ID=Phyra86192.3;Parent=Phyra86192;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_525 . CDS 8177 8631 . + 0 ID=Phyra86192;Parent=Phyra86192;rank=4 scaffold_525 . exon 8177 8631 . + . ID=Phyra86192.4;Parent=Phyra86192;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_525 . CDS 8686 8703 . + 0 ID=Phyra86192;Parent=Phyra86192;rank=5 scaffold_525 . exon 8686 8703 . + . ID=Phyra86192.5;Parent=Phyra86192;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_525 . CDS 8728 8771 . + 0 ID=Phyra86192;Parent=Phyra86192;rank=6 scaffold_525 . exon 8728 8771 . + . ID=Phyra86192.6;Parent=Phyra86192;constitutive=1;ensembl_phase=1;rank=6 scaffold_525 . CDS 8866 8919 . + 0 ID=Phyra86192;Parent=Phyra86192;rank=7 scaffold_525 . exon 8866 8919 . + . ID=Phyra86192.7;Parent=Phyra86192;constitutive=1;rank=7 scaffold_525 . CDS 8991 9347 . + 0 ID=Phyra86192;Parent=Phyra86192;rank=8 scaffold_525 . exon 8991 9347 . + . ID=Phyra86192.8;Parent=Phyra86192;constitutive=1;rank=8 ##gff-version 3 ##sequence-region scaffold_520 1 10860 scaffold_520 . repeat_region 1052 2240 . ? . description=dust scaffold_520 . repeat_region 3821 9538 . ? . description=dust scaffold_520 . biological_region 10074 10077 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_522 1 10868 scaffold_522 . repeat_region 1699 2793 . ? . description=dust scaffold_522 . biological_region 3414 3417 0.999 + . logic_name=eponine scaffold_522 . repeat_region 3481 3560 . ? . description=trf scaffold_522 . biological_region 3857 3860 0.999 - . logic_name=eponine scaffold_522 . repeat_region 3944 9676 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_526 1 10871 scaffold_526 . repeat_region 1230 5284 . ? . description=dust scaffold_526 . repeat_region 5289 6301 . + . description=GypsyPi-1c_I-int scaffold_526 ensembl protein_coding_gene 410 1110 . - . ID=Phyra86193;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_526000001;logic_name=jgi_phyra1 scaffold_526 ensembl transcript 410 1110 . - . ID=Phyra86193;Parent=Phyra86193;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_526 . CDS 410 1110 . - 0 ID=Phyra86193;Parent=Phyra86193;rank=1 scaffold_526 . exon 410 1110 . - . ID=Phyra86193.1;Parent=Phyra86193;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_526 . biological_region 7720 7721 0.999 - . logic_name=eponine scaffold_526 . biological_region 8391 8395 0.999 - . logic_name=eponine scaffold_526 . biological_region 9021 9022 0.999 + . logic_name=eponine scaffold_526 . biological_region 9936 9937 0.999 + . logic_name=eponine scaffold_526 ensembl protein_coding_gene 6007 6300 . + . ID=Phyra50443;biotype=protein_coding;external_name=gwEuk.526.3.1;logic_name=jgi_phyra1 scaffold_526 ensembl transcript 6007 6300 . + . ID=Phyra50443;Parent=Phyra50443;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_526 . CDS 6007 6300 . + 0 ID=Phyra50443;Parent=Phyra50443;rank=1 scaffold_526 . exon 6007 6300 . + . ID=Phyra50443.1;Parent=Phyra50443;constitutive=1;rank=1 scaffold_526 ensembl protein_coding_gene 7770 7931 . + . ID=Phyra50444;biotype=protein_coding;external_name=gwEuk.526.4.1;logic_name=jgi_phyra1 scaffold_526 ensembl transcript 7770 7931 . + . ID=Phyra50444;Parent=Phyra50444;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_526 . CDS 7770 7931 . + 0 ID=Phyra50444;Parent=Phyra50444;rank=1 scaffold_526 . exon 7770 7931 . + . ID=Phyra50444.1;Parent=Phyra50444;constitutive=1;rank=1 scaffold_526 ensembl protein_coding_gene 8125 9329 . - . ID=Phyra86194;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_526000002;logic_name=jgi_phyra1 scaffold_526 ensembl transcript 8125 9329 . - . ID=Phyra86194;Parent=Phyra86194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_526 . CDS 8125 8863 . - 0 ID=Phyra86194;Parent=Phyra86194;rank=2 scaffold_526 . exon 8125 8863 . - . ID=Phyra86194.2;Parent=Phyra86194;constitutive=1;ensembl_phase=2;rank=2 scaffold_526 . CDS 8998 9329 . - 0 ID=Phyra86194;Parent=Phyra86194;rank=1 scaffold_526 . exon 8998 9329 . - . ID=Phyra86194.1;Parent=Phyra86194;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_519 1 10874 scaffold_519 . repeat_region 1340 2527 . ? . description=dust scaffold_519 . repeat_region 2953 3007 . ? . description=trf scaffold_519 . repeat_region 3431 3459 . ? . description=trf scaffold_519 . repeat_region 3636 3663 . ? . description=trf scaffold_519 . repeat_region 3747 9987 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_518 1 10885 scaffold_518 . repeat_region 97 107 . ? . description=dust scaffold_518 . repeat_region 264 387 . ? . description=trf scaffold_518 . repeat_region 281 371 . ? . description=dust scaffold_518 . repeat_region 282 319 . ? . description=trf scaffold_518 . repeat_region 1374 1578 . ? . description=dust scaffold_518 . repeat_region 1579 2065 . ? . description=trf scaffold_518 . repeat_region 1579 2314 . ? . description=trf scaffold_518 . repeat_region 1590 2257 . ? . description=trf scaffold_518 . repeat_region 1625 1758 . ? . description=trf scaffold_518 . repeat_region 1667 1894 . ? . description=trf scaffold_518 . repeat_region 1797 1930 . ? . description=trf scaffold_518 . repeat_region 1839 2277 . ? . description=trf scaffold_518 . repeat_region 1839 2277 . ? . description=trf scaffold_518 . biological_region 2682 2682 0.999 + . logic_name=eponine scaffold_518 . repeat_region 4535 4619 . ? . description=trf scaffold_518 . repeat_region 4541 4629 . ? . description=trf scaffold_518 . repeat_region 4666 9203 . ? . description=dust scaffold_518 ensembl protein_coding_gene 2361 4010 . - . ID=Phyra86185;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_518000001;logic_name=jgi_phyra1 scaffold_518 ensembl transcript 2361 4010 . - . ID=Phyra86185;Parent=Phyra86185;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_518 . CDS 2361 4010 . - 0 ID=Phyra86185;Parent=Phyra86185;rank=1 scaffold_518 . exon 2361 4010 . - . ID=Phyra86185.1;Parent=Phyra86185;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_523 1 10915 scaffold_523 . repeat_region 17 2053 . + . description=GypsyPi-1c_I-int scaffold_523 . repeat_region 2088 2849 . ? . description=dust scaffold_523 . biological_region 3149 3154 0.999 + . logic_name=eponine scaffold_523 . biological_region 3243 3243 0.999 - . logic_name=eponine scaffold_523 . biological_region 3333 3339 0.999 + . logic_name=eponine scaffold_523 . repeat_region 3719 4393 . ? . description=dust scaffold_523 . biological_region 4535 4537 0.999 + . logic_name=eponine scaffold_523 . repeat_region 4610 4831 . - . description=GypsyPi-1c_I-int scaffold_523 . repeat_region 5143 7468 . - . description=GypsyPi-1c_I-int scaffold_523 ensembl protein_coding_gene 7 1551 . + . ID=Phyra86189;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_523000001;logic_name=jgi_phyra1 scaffold_523 ensembl transcript 7 1551 . + . ID=Phyra86189;Parent=Phyra86189;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_523 . CDS 7 1551 . + 0 ID=Phyra86189;Parent=Phyra86189;rank=1 scaffold_523 . exon 7 1551 . + . ID=Phyra86189.1;Parent=Phyra86189;constitutive=1;rank=1 scaffold_523 ensembl protein_coding_gene 5645 7894 . - . ID=Phyra86190;biotype=protein_coding;description=Reverse transcriptase [Source:UniProtKB/TrEMBL%3BAcc:Q0Q534];external_name=fgenesh1_pg.C_scaffold_523000002;logic_name=jgi_phyra1 scaffold_523 ensembl transcript 5645 7894 . - . ID=Phyra86190;Parent=Phyra86190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_523 . CDS 5645 7894 . - 0 ID=Phyra86190;Parent=Phyra86190;rank=1 scaffold_523 . exon 5645 7894 . - . ID=Phyra86190.1;Parent=Phyra86190;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_517 1 10941 scaffold_517 . repeat_region 3192 3259 . ? . description=trf scaffold_517 ensembl protein_coding_gene 257 5437 . + . ID=Phyra86184;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_517000001;logic_name=jgi_phyra1 scaffold_517 ensembl transcript 257 5437 . + . ID=Phyra86184;Parent=Phyra86184;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_517 . CDS 257 578 . + 0 ID=Phyra86184;Parent=Phyra86184;rank=1 scaffold_517 . exon 257 578 . + . ID=Phyra86184.1;Parent=Phyra86184;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_517 . CDS 642 922 . + 0 ID=Phyra86184;Parent=Phyra86184;rank=2 scaffold_517 . exon 642 922 . + . ID=Phyra86184.2;Parent=Phyra86184;constitutive=1;ensembl_phase=1;rank=2 scaffold_517 . CDS 1031 1489 . + 0 ID=Phyra86184;Parent=Phyra86184;rank=3 scaffold_517 . exon 1031 1489 . + . ID=Phyra86184.3;Parent=Phyra86184;constitutive=1;rank=3 scaffold_517 . CDS 1557 1619 . + 0 ID=Phyra86184;Parent=Phyra86184;rank=4 scaffold_517 . exon 1557 1619 . + . ID=Phyra86184.4;Parent=Phyra86184;constitutive=1;rank=4 scaffold_517 . CDS 1809 2795 . + 0 ID=Phyra86184;Parent=Phyra86184;rank=5 scaffold_517 . exon 1809 2795 . + . ID=Phyra86184.5;Parent=Phyra86184;constitutive=1;rank=5 scaffold_517 . CDS 3093 5387 . + 0 ID=Phyra86184;Parent=Phyra86184;rank=6 scaffold_517 . exon 3093 5387 . + . ID=Phyra86184.6;Parent=Phyra86184;constitutive=1;rank=6 scaffold_517 . CDS 5432 5437 . + 0 ID=Phyra86184;Parent=Phyra86184;rank=7 scaffold_517 . exon 5432 5437 . + . ID=Phyra86184.7;Parent=Phyra86184;constitutive=1;rank=7 scaffold_517 . repeat_region 5604 7893 . ? . description=dust scaffold_517 . repeat_region 8421 8440 . ? . description=dust scaffold_517 . repeat_region 10781 10800 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_516 1 11046 scaffold_516 . repeat_region 1653 1666 . ? . description=dust scaffold_516 . repeat_region 3681 3738 . ? . description=trf scaffold_516 . repeat_region 5061 7059 . ? . description=dust scaffold_516 ensembl protein_coding_gene 4396 5010 . - . ID=Phyra86181;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_516000001;logic_name=jgi_phyra1 scaffold_516 ensembl transcript 4396 5010 . - . ID=Phyra86181;Parent=Phyra86181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_516 . CDS 4396 5010 . - 0 ID=Phyra86181;Parent=Phyra86181;rank=1 scaffold_516 . exon 4396 5010 . - . ID=Phyra86181.1;Parent=Phyra86181;constitutive=1;rank=1 scaffold_516 . biological_region 10672 10676 0.999 + . logic_name=eponine scaffold_516 . biological_region 10809 10809 0.999 + . logic_name=eponine scaffold_516 ensembl protein_coding_gene 7832 8551 . - . ID=Phyra72403;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_516000001;logic_name=jgi_phyra1 scaffold_516 ensembl transcript 7832 8551 . - . ID=Phyra72403;Parent=Phyra72403;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_516 . CDS 7832 8551 . - 0 ID=Phyra72403;Parent=Phyra72403;rank=1 scaffold_516 . exon 7832 8551 . - . ID=Phyra72403.1;Parent=Phyra72403;constitutive=1;rank=1 scaffold_516 ensembl protein_coding_gene 10001 10848 . - . ID=Phyra86183;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_516000003;logic_name=jgi_phyra1 scaffold_516 ensembl transcript 10001 10848 . - . ID=Phyra86183;Parent=Phyra86183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_516 . CDS 10001 10048 . - 0 ID=Phyra86183;Parent=Phyra86183;rank=3 scaffold_516 . exon 10001 10048 . - . ID=Phyra86183.3;Parent=Phyra86183;constitutive=1;rank=3 scaffold_516 . CDS 10168 10331 . - 0 ID=Phyra86183;Parent=Phyra86183;rank=2 scaffold_516 . exon 10168 10331 . - . ID=Phyra86183.2;Parent=Phyra86183;constitutive=1;ensembl_phase=1;rank=2 scaffold_516 . CDS 10449 10848 . - 0 ID=Phyra86183;Parent=Phyra86183;rank=1 scaffold_516 . exon 10449 10848 . - . ID=Phyra86183.1;Parent=Phyra86183;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_514 1 11060 scaffold_514 . repeat_region 29 225 . + . description=GypsyPi-1c_I-int scaffold_514 . repeat_region 466 743 . ? . description=trf scaffold_514 . biological_region 491 496 0.999 + . logic_name=eponine scaffold_514 . repeat_region 744 2098 . ? . description=dust scaffold_514 . repeat_region 2110 3309 . + . description=GypsyPi-1c_I-int scaffold_514 . biological_region 2894 2898 0.999 - . logic_name=eponine scaffold_514 . biological_region 2932 2934 0.999 - . logic_name=eponine scaffold_514 . repeat_region 3310 7273 . ? . description=dust scaffold_514 ensembl protein_coding_gene 3077 3301 . + . ID=Phyra50368;biotype=protein_coding;external_name=gwEuk.514.1.1;logic_name=jgi_phyra1 scaffold_514 ensembl transcript 3077 3301 . + . ID=Phyra50368;Parent=Phyra50368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_514 . CDS 3077 3301 . + 0 ID=Phyra50368;Parent=Phyra50368;rank=1 scaffold_514 . exon 3077 3301 . + . ID=Phyra50368.1;Parent=Phyra50368;constitutive=1;rank=1 scaffold_514 ensembl protein_coding_gene 9227 9633 . - . ID=Phyra86179;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_514000001;logic_name=jgi_phyra1 scaffold_514 ensembl transcript 9227 9633 . - . ID=Phyra86179;Parent=Phyra86179;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_514 . CDS 9227 9291 . - 0 ID=Phyra86179;Parent=Phyra86179;rank=2 scaffold_514 . exon 9227 9291 . - . ID=Phyra86179.2;Parent=Phyra86179;constitutive=1;ensembl_phase=1;rank=2 scaffold_514 . CDS 9327 9633 . - 0 ID=Phyra86179;Parent=Phyra86179;rank=1 scaffold_514 . exon 9327 9633 . - . ID=Phyra86179.1;Parent=Phyra86179;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_514 ensembl protein_coding_gene 10056 11053 . + . ID=Phyra86180;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_514000002;logic_name=jgi_phyra1 scaffold_514 ensembl transcript 10056 11053 . + . ID=Phyra86180;Parent=Phyra86180;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_514 . CDS 10056 11053 . + 0 ID=Phyra86180;Parent=Phyra86180;rank=1 scaffold_514 . exon 10056 11053 . + . ID=Phyra86180.1;Parent=Phyra86180;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_513 1 11066 scaffold_513 . biological_region 191 195 0.999 - . logic_name=eponine scaffold_513 . repeat_region 751 2014 . ? . description=dust scaffold_513 . repeat_region 4231 9412 . ? . description=dust scaffold_513 ensembl protein_coding_gene 3236 4049 . + . ID=Phyra86177;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_513000001;logic_name=jgi_phyra1 scaffold_513 ensembl transcript 3236 4049 . + . ID=Phyra86177;Parent=Phyra86177;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_513 . CDS 3236 3981 . + 0 ID=Phyra86177;Parent=Phyra86177;rank=1 scaffold_513 . exon 3236 3981 . + . ID=Phyra86177.1;Parent=Phyra86177;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_513 . CDS 4001 4049 . + 0 ID=Phyra86177;Parent=Phyra86177;rank=2 scaffold_513 . exon 4001 4049 . + . ID=Phyra86177.2;Parent=Phyra86177;constitutive=1;ensembl_phase=2;rank=2 scaffold_513 ensembl protein_coding_gene 9766 11045 . - . ID=Phyra86178;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_513000002;logic_name=jgi_phyra1 scaffold_513 ensembl transcript 9766 11045 . - . ID=Phyra86178;Parent=Phyra86178;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_513 . CDS 9766 10117 . - 0 ID=Phyra86178;Parent=Phyra86178;rank=2 scaffold_513 . exon 9766 10117 . - . ID=Phyra86178.2;Parent=Phyra86178;constitutive=1;ensembl_phase=2;rank=2 scaffold_513 . CDS 10168 11045 . - 0 ID=Phyra86178;Parent=Phyra86178;rank=1 scaffold_513 . exon 10168 11045 . - . ID=Phyra86178.1;Parent=Phyra86178;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_515 1 11082 scaffold_515 . biological_region 529 532 0.999 + . logic_name=eponine scaffold_515 . biological_region 1507 1513 0.999 - . logic_name=eponine scaffold_515 . repeat_region 1833 1878 . + . description=GypsyPi-1c_LTR scaffold_515 . repeat_region 3968 5313 . ? . description=dust scaffold_515 . repeat_region 5723 5789 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_511 1 11100 scaffold_511 . repeat_region 1011 6951 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_530 1 11121 scaffold_530 . repeat_region 635 717 . - . description=Polinton-1_PI scaffold_530 . repeat_region 782 789 . ? . description=dust scaffold_530 . repeat_region 1176 1184 . ? . description=dust scaffold_530 . repeat_region 1187 1763 . - . description=Polinton-1_PI scaffold_530 . repeat_region 1764 6098 . ? . description=dust scaffold_530 ensembl protein_coding_gene 4 494 . - . ID=Phyra50507;biotype=protein_coding;external_name=gwEuk.530.2.1;logic_name=jgi_phyra1 scaffold_530 ensembl transcript 4 494 . - . ID=Phyra50507;Parent=Phyra50507;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_530 . CDS 4 494 . - 0 ID=Phyra50507;Parent=Phyra50507;rank=1 scaffold_530 . exon 4 494 . - . ID=Phyra50507.1;Parent=Phyra50507;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_530 . repeat_region 6626 7299 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_524 1 11138 scaffold_524 . repeat_region 975 2198 . ? . description=dust scaffold_524 . repeat_region 3285 9406 . ? . description=dust scaffold_524 . repeat_region 10016 10068 . ? . description=trf scaffold_524 ensembl protein_coding_gene 9824 10300 . + . ID=Phyra86191;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_524000001;logic_name=jgi_phyra1 scaffold_524 ensembl transcript 9824 10300 . + . ID=Phyra86191;Parent=Phyra86191;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_524 . CDS 9824 10300 . + 0 ID=Phyra86191;Parent=Phyra86191;rank=1 scaffold_524 . exon 9824 10300 . + . ID=Phyra86191.1;Parent=Phyra86191;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_512 1 11141 scaffold_512 . repeat_region 2180 5876 . ? . description=dust scaffold_512 . biological_region 6736 6740 0.999 + . logic_name=eponine scaffold_512 . biological_region 6773 6775 0.999 - . logic_name=eponine scaffold_512 . repeat_region 8675 8989 . ? . description=trf scaffold_512 . repeat_region 8681 8995 . + . description=(CAGA)n scaffold_512 ensembl protein_coding_gene 5878 8513 . + . ID=Phyra86176;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_512000001;logic_name=jgi_phyra1 scaffold_512 ensembl transcript 5878 8513 . + . ID=Phyra86176;Parent=Phyra86176;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_512 . CDS 5878 6145 . + 0 ID=Phyra86176;Parent=Phyra86176;rank=1 scaffold_512 . exon 5878 6145 . + . ID=Phyra86176.1;Parent=Phyra86176;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_512 . CDS 6172 6720 . + 0 ID=Phyra86176;Parent=Phyra86176;rank=2 scaffold_512 . exon 6172 6720 . + . ID=Phyra86176.2;Parent=Phyra86176;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_512 . CDS 6872 7128 . + 0 ID=Phyra86176;Parent=Phyra86176;rank=3 scaffold_512 . exon 6872 7128 . + . ID=Phyra86176.3;Parent=Phyra86176;constitutive=1;ensembl_phase=1;rank=3 scaffold_512 . CDS 7195 8319 . + 0 ID=Phyra86176;Parent=Phyra86176;rank=4 scaffold_512 . exon 7195 8319 . + . ID=Phyra86176.4;Parent=Phyra86176;constitutive=1;rank=4 scaffold_512 . CDS 8466 8513 . + 0 ID=Phyra86176;Parent=Phyra86176;rank=5 scaffold_512 . exon 8466 8513 . + . ID=Phyra86176.5;Parent=Phyra86176;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_510 1 11144 scaffold_510 . biological_region 913 914 0.999 + . logic_name=eponine scaffold_510 . repeat_region 1410 1429 . ? . description=trf scaffold_510 . repeat_region 1430 7166 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_493 1 11145 scaffold_493 ensembl pseudogene 4815 5065 . + . ID=Phyra49777;biotype=pseudogene;external_name=gwEuk.493.1.1;logic_name=jgi_phyra1 scaffold_493 ensembl pseudogene 4815 5065 . + . ID=Phyra49777;Parent=Phyra49777;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_493 . exon 4815 5065 . + . ID=Phyra49777.1;Parent=Phyra49777;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_493 ensembl protein_coding_gene 6019 7030 . + . ID=Phyra86150;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_493000001;logic_name=jgi_phyra1 scaffold_493 ensembl transcript 6019 7030 . + . ID=Phyra86150;Parent=Phyra86150;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_493 . CDS 6019 6213 . + 0 ID=Phyra86150;Parent=Phyra86150;rank=1 scaffold_493 . exon 6019 6213 . + . ID=Phyra86150.1;Parent=Phyra86150;constitutive=1;rank=1 scaffold_493 . CDS 6514 6971 . + 0 ID=Phyra86150;Parent=Phyra86150;rank=2 scaffold_493 . exon 6514 6971 . + . ID=Phyra86150.2;Parent=Phyra86150;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_493 . CDS 7027 7030 . + 0 ID=Phyra86150;Parent=Phyra86150;rank=3 scaffold_493 . exon 7027 7030 . + . ID=Phyra86150.3;Parent=Phyra86150;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_509 1 11155 scaffold_509 . repeat_region 1386 6325 . ? . description=dust scaffold_509 . biological_region 6867 6871 0.999 + . logic_name=eponine scaffold_509 . repeat_region 8027 8053 . ? . description=trf scaffold_509 . repeat_region 8339 8452 . + . description=Gypsy-1-I_PI-int scaffold_509 ensembl protein_coding_gene 6797 7297 . - . ID=Phyra86175;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_509000001;logic_name=jgi_phyra1 scaffold_509 ensembl transcript 6797 7297 . - . ID=Phyra86175;Parent=Phyra86175;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_509 . CDS 6797 7297 . - 0 ID=Phyra86175;Parent=Phyra86175;rank=1 scaffold_509 . exon 6797 7297 . - . ID=Phyra86175.1;Parent=Phyra86175;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_507 1 11165 scaffold_507 . biological_region 934 938 0.999 - . logic_name=eponine scaffold_507 . biological_region 1193 1197 0.999 + . logic_name=eponine scaffold_507 . biological_region 1289 1291 0.999 - . logic_name=eponine scaffold_507 . biological_region 3855 3857 0.999 - . logic_name=eponine scaffold_507 . biological_region 4436 4440 0.999 + . logic_name=eponine scaffold_507 . biological_region 4478 4482 0.999 + . logic_name=eponine scaffold_507 . repeat_region 4516 4582 . ? . description=trf scaffold_507 . biological_region 4931 4936 0.999 - . logic_name=eponine scaffold_507 ensembl protein_coding_gene 639 1983 . - . ID=Phyra86171;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_507000001;logic_name=jgi_phyra1 scaffold_507 ensembl transcript 639 1983 . - . ID=Phyra86171;Parent=Phyra86171;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_507 . CDS 639 1186 . - 0 ID=Phyra86171;Parent=Phyra86171;rank=4 scaffold_507 . exon 639 1186 . - . ID=Phyra86171.4;Parent=Phyra86171;constitutive=1;ensembl_phase=1;rank=4 scaffold_507 . CDS 1243 1497 . - 0 ID=Phyra86171;Parent=Phyra86171;rank=3 scaffold_507 . exon 1243 1497 . - . ID=Phyra86171.3;Parent=Phyra86171;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_507 . CDS 1565 1781 . - 0 ID=Phyra86171;Parent=Phyra86171;rank=2 scaffold_507 . exon 1565 1781 . - . ID=Phyra86171.2;Parent=Phyra86171;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_507 . CDS 1960 1983 . - 0 ID=Phyra86171;Parent=Phyra86171;rank=1 scaffold_507 . exon 1960 1983 . - . ID=Phyra86171.1;Parent=Phyra86171;constitutive=1;rank=1 scaffold_507 ensembl protein_coding_gene 2733 5160 . + . ID=Phyra86172;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_507000002;logic_name=jgi_phyra1 scaffold_507 ensembl transcript 2733 5160 . + . ID=Phyra86172;Parent=Phyra86172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_507 . CDS 2733 3410 . + 0 ID=Phyra86172;Parent=Phyra86172;rank=1 scaffold_507 . exon 2733 3410 . + . ID=Phyra86172.1;Parent=Phyra86172;constitutive=1;rank=1 scaffold_507 . CDS 3436 5160 . + 0 ID=Phyra86172;Parent=Phyra86172;rank=2 scaffold_507 . exon 3436 5160 . + . ID=Phyra86172.2;Parent=Phyra86172;constitutive=1;rank=2 scaffold_507 ensembl protein_coding_gene 6620 10557 . + . ID=Phyra86173;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_507000003;logic_name=jgi_phyra1 scaffold_507 ensembl transcript 6620 10557 . + . ID=Phyra86173;Parent=Phyra86173;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_507 . CDS 6620 9665 . + 0 ID=Phyra86173;Parent=Phyra86173;rank=1 scaffold_507 . exon 6620 9665 . + . ID=Phyra86173.1;Parent=Phyra86173;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_507 . CDS 9918 10478 . + 0 ID=Phyra86173;Parent=Phyra86173;rank=2 scaffold_507 . exon 9918 10478 . + . ID=Phyra86173.2;Parent=Phyra86173;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_507 . CDS 10535 10557 . + 0 ID=Phyra86173;Parent=Phyra86173;rank=3 scaffold_507 . exon 10535 10557 . + . ID=Phyra86173.3;Parent=Phyra86173;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_508 1 11171 scaffold_508 . repeat_region 2001 4947 . ? . description=dust scaffold_508 ensembl protein_coding_gene 5651 6785 . + . ID=Phyra86174;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_508000001;logic_name=jgi_phyra1 scaffold_508 ensembl transcript 5651 6785 . + . ID=Phyra86174;Parent=Phyra86174;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_508 . CDS 5651 6512 . + 0 ID=Phyra86174;Parent=Phyra86174;rank=1 scaffold_508 . exon 5651 6512 . + . ID=Phyra86174.1;Parent=Phyra86174;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_508 . CDS 6549 6754 . + 0 ID=Phyra86174;Parent=Phyra86174;rank=2 scaffold_508 . exon 6549 6754 . + . ID=Phyra86174.2;Parent=Phyra86174;constitutive=1;ensembl_phase=1;rank=2 scaffold_508 . CDS 6777 6785 . + 0 ID=Phyra86174;Parent=Phyra86174;rank=3 scaffold_508 . exon 6777 6785 . + . ID=Phyra86174.3;Parent=Phyra86174;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_503 1 11291 scaffold_503 . biological_region 296 296 0.999 + . logic_name=eponine scaffold_503 . biological_region 3518 3521 0.999 + . logic_name=eponine scaffold_503 . biological_region 3818 3824 0.999 - . logic_name=eponine scaffold_503 . biological_region 3844 3847 0.999 - . logic_name=eponine scaffold_503 . biological_region 3910 3910 0.999 - . logic_name=eponine scaffold_503 . repeat_region 4497 4593 . ? . description=trf scaffold_503 ensembl protein_coding_gene 7 4149 . + . ID=Phyra86165;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_503000001;logic_name=jgi_phyra1 scaffold_503 ensembl transcript 7 4149 . + . ID=Phyra86165;Parent=Phyra86165;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_503 . CDS 7 187 . + 0 ID=Phyra86165;Parent=Phyra86165;rank=1 scaffold_503 . exon 7 187 . + . ID=Phyra86165.1;Parent=Phyra86165;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_503 . CDS 320 512 . + 0 ID=Phyra86165;Parent=Phyra86165;rank=2 scaffold_503 . exon 320 512 . + . ID=Phyra86165.2;Parent=Phyra86165;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_503 . CDS 594 864 . + 0 ID=Phyra86165;Parent=Phyra86165;rank=3 scaffold_503 . exon 594 864 . + . ID=Phyra86165.3;Parent=Phyra86165;constitutive=1;ensembl_phase=2;rank=3 scaffold_503 . CDS 973 4149 . + 0 ID=Phyra86165;Parent=Phyra86165;rank=4 scaffold_503 . exon 973 4149 . + . ID=Phyra86165.4;Parent=Phyra86165;constitutive=1;rank=4 scaffold_503 ensembl protein_coding_gene 5199 6396 . + . ID=Phyra86166;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_503000002;logic_name=jgi_phyra1 scaffold_503 ensembl transcript 5199 6396 . + . ID=Phyra86166;Parent=Phyra86166;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_503 . CDS 5199 5963 . + 0 ID=Phyra86166;Parent=Phyra86166;rank=1 scaffold_503 . exon 5199 5963 . + . ID=Phyra86166.1;Parent=Phyra86166;constitutive=1;rank=1 scaffold_503 . CDS 6024 6170 . + 0 ID=Phyra86166;Parent=Phyra86166;rank=2 scaffold_503 . CDS 6247 6396 . + 0 ID=Phyra86166;Parent=Phyra86166;rank=3 scaffold_503 . repeat_region 7173 7220 . ? . description=dust scaffold_503 . repeat_region 7329 9422 . ? . description=dust scaffold_503 . repeat_region 9424 10148 . - . description=GypsyPi-1c_I-int scaffold_503 . repeat_region 11199 11272 . - . description=GypsyPi-1c_I-int scaffold_503 . exon 6024 6170 . + . ID=Phyra86166.2;Parent=Phyra86166;constitutive=1;rank=2 scaffold_503 . exon 6247 6396 . + . ID=Phyra86166.3;Parent=Phyra86166;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_501 1 11315 scaffold_501 . repeat_region 1 653 . - . description=GypsyPi-1c_I-int scaffold_501 . repeat_region 1126 2691 . - . description=GypsyPi-1c_I-int scaffold_501 . repeat_region 2019 2269 . ? . description=dust scaffold_501 . repeat_region 2692 2834 . - . description=GypsyPi-1c_LTR scaffold_501 . repeat_region 3012 3020 . ? . description=dust scaffold_501 . repeat_region 3162 3265 . - . description=Polinton-1_PI scaffold_501 . repeat_region 5231 6932 . ? . description=dust scaffold_501 ensembl protein_coding_gene 3691 3906 . - . ID=Phyra50183;biotype=protein_coding;external_name=gwEuk.501.1.1;logic_name=jgi_phyra1 scaffold_501 ensembl transcript 3691 3906 . - . ID=Phyra50183;Parent=Phyra50183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_501 . CDS 3691 3792 . - 0 ID=Phyra50183;Parent=Phyra50183;rank=2 scaffold_501 . exon 3691 3792 . - . ID=Phyra50183.2;Parent=Phyra50183;constitutive=1;rank=2 scaffold_501 . CDS 3859 3906 . - 0 ID=Phyra50183;Parent=Phyra50183;rank=1 scaffold_501 . exon 3859 3906 . - . ID=Phyra50183.1;Parent=Phyra50183;constitutive=1;rank=1 scaffold_501 ensembl protein_coding_gene 265 810 . - . ID=Phyra86162;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_501000001;logic_name=jgi_phyra1 scaffold_501 ensembl transcript 265 810 . - . ID=Phyra86162;Parent=Phyra86162;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_501 . CDS 265 663 . - 0 ID=Phyra86162;Parent=Phyra86162;rank=2 scaffold_501 . exon 265 663 . - . ID=Phyra86162.2;Parent=Phyra86162;constitutive=1;rank=2 scaffold_501 . CDS 703 810 . - 0 ID=Phyra86162;Parent=Phyra86162;rank=1 scaffold_501 . exon 703 810 . - . ID=Phyra86162.1;Parent=Phyra86162;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_500 1 11318 scaffold_500 . repeat_region 1460 1467 . ? . description=dust scaffold_500 . repeat_region 2349 3764 . ? . description=dust scaffold_500 . repeat_region 4837 6005 . ? . description=dust scaffold_500 ensembl protein_coding_gene 244 786 . + . ID=Phyra86158;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_500000001;logic_name=jgi_phyra1 scaffold_500 ensembl transcript 244 786 . + . ID=Phyra86158;Parent=Phyra86158;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_500 . CDS 244 786 . + 0 ID=Phyra86158;Parent=Phyra86158;rank=1 scaffold_500 . exon 244 786 . + . ID=Phyra86158.1;Parent=Phyra86158;constitutive=1;rank=1 scaffold_500 ensembl protein_coding_gene 4224 4655 . - . ID=Phyra86159;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_500000002;logic_name=jgi_phyra1 scaffold_500 ensembl transcript 4224 4655 . - . ID=Phyra86159;Parent=Phyra86159;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_500 . CDS 4224 4655 . - 0 ID=Phyra86159;Parent=Phyra86159;rank=1 scaffold_500 . exon 4224 4655 . - . ID=Phyra86159.1;Parent=Phyra86159;constitutive=1;rank=1 scaffold_500 . biological_region 8345 8349 0.999 + . logic_name=eponine scaffold_500 . biological_region 8496 8498 0.999 - . logic_name=eponine scaffold_500 . biological_region 9655 9660 0.999 + . logic_name=eponine scaffold_500 ensembl protein_coding_gene 6681 8528 . + . ID=Phyra86160;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_500000003;logic_name=jgi_phyra1 scaffold_500 ensembl transcript 6681 8528 . + . ID=Phyra86160;Parent=Phyra86160;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_500 . CDS 6681 8528 . + 0 ID=Phyra86160;Parent=Phyra86160;rank=1 scaffold_500 . exon 6681 8528 . + . ID=Phyra86160.1;Parent=Phyra86160;constitutive=1;rank=1 scaffold_500 ensembl protein_coding_gene 8847 10568 . - . ID=Phyra86161;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_500000004;logic_name=jgi_phyra1 scaffold_500 ensembl transcript 8847 10568 . - . ID=Phyra86161;Parent=Phyra86161;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_500 . CDS 8847 10568 . - 0 ID=Phyra86161;Parent=Phyra86161;rank=1 scaffold_500 . exon 8847 10568 . - . ID=Phyra86161.1;Parent=Phyra86161;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_499 1 11323 scaffold_499 . repeat_region 893 902 . ? . description=dust scaffold_499 . repeat_region 1319 2309 . ? . description=dust scaffold_499 . repeat_region 3959 4027 . ? . description=trf scaffold_499 . repeat_region 4588 10061 . ? . description=dust scaffold_499 . biological_region 10472 10475 0.999 - . logic_name=eponine scaffold_499 . biological_region 10484 10487 0.999 + . logic_name=eponine scaffold_499 . biological_region 10530 10530 0.999 + . logic_name=eponine scaffold_499 . biological_region 11078 11081 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_505 1 11345 scaffold_505 . biological_region 1187 1188 0.999 - . logic_name=eponine scaffold_505 . repeat_region 1530 1587 . ? . description=trf scaffold_505 . repeat_region 1666 2264 . ? . description=dust scaffold_505 . repeat_region 2368 2391 . ? . description=trf scaffold_505 . biological_region 2941 2943 0.999 - . logic_name=eponine scaffold_505 . repeat_region 4411 10084 . ? . description=dust scaffold_505 ensembl protein_coding_gene 802 3333 . - . ID=Phyra86169;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_505000001;logic_name=jgi_phyra1 scaffold_505 ensembl transcript 802 3333 . - . ID=Phyra86169;Parent=Phyra86169;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_505 . CDS 802 1624 . - 0 ID=Phyra86169;Parent=Phyra86169;rank=2 scaffold_505 . exon 802 1624 . - . ID=Phyra86169.2;Parent=Phyra86169;constitutive=1;ensembl_phase=2;rank=2 scaffold_505 . CDS 2270 3333 . - 0 ID=Phyra86169;Parent=Phyra86169;rank=1 scaffold_505 . exon 2270 3333 . - . ID=Phyra86169.1;Parent=Phyra86169;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_506 1 11348 scaffold_506 . repeat_region 404 1399 . - . description=GypsyPi-1c_I-int scaffold_506 . repeat_region 1810 2449 . ? . description=dust scaffold_506 . biological_region 2516 2517 0.999 - . logic_name=eponine scaffold_506 . repeat_region 3366 3373 . ? . description=dust scaffold_506 . repeat_region 3971 4020 . ? . description=dust scaffold_506 ensembl protein_coding_gene 824 1684 . - . ID=Phyra86170;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_506000001;logic_name=jgi_phyra1 scaffold_506 ensembl transcript 824 1684 . - . ID=Phyra86170;Parent=Phyra86170;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_506 . CDS 824 1684 . - 0 ID=Phyra86170;Parent=Phyra86170;rank=1 scaffold_506 . exon 824 1684 . - . ID=Phyra86170.1;Parent=Phyra86170;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_497 1 11350 scaffold_497 . biological_region 1105 1110 0.999 - . logic_name=eponine scaffold_497 . repeat_region 2884 8206 . ? . description=dust scaffold_497 ensembl protein_coding_gene 849 2121 . - . ID=Phyra49780;biotype=protein_coding;external_name=gwEuk.497.2.1;logic_name=jgi_phyra1 scaffold_497 ensembl transcript 849 2121 . - . ID=Phyra49780;Parent=Phyra49780;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_497 . CDS 849 1499 . - 0 ID=Phyra49780;Parent=Phyra49780;rank=2 scaffold_497 . exon 849 1499 . - . ID=Phyra49780.2;Parent=Phyra49780;constitutive=1;rank=2 scaffold_497 . CDS 1576 2121 . - 0 ID=Phyra49780;Parent=Phyra49780;rank=1 scaffold_497 . exon 1576 2121 . - . ID=Phyra49780.1;Parent=Phyra49780;constitutive=1;rank=1 scaffold_497 ensembl protein_coding_gene 8307 10913 . + . ID=Phyra86156;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_497000002;logic_name=jgi_phyra1 scaffold_497 ensembl transcript 8307 10913 . + . ID=Phyra86156;Parent=Phyra86156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_497 . CDS 8307 10913 . + 0 ID=Phyra86156;Parent=Phyra86156;rank=1 scaffold_497 . exon 8307 10913 . + . ID=Phyra86156.1;Parent=Phyra86156;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_498 1 11383 scaffold_498 . repeat_region 1002 7009 . ? . description=dust scaffold_498 . repeat_region 7802 8107 . - . description=GypsyPi-1c_LTR scaffold_498 ensembl protein_coding_gene 10343 10931 . - . ID=Phyra86157;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_498000001;logic_name=jgi_phyra1 scaffold_498 ensembl transcript 10343 10931 . - . ID=Phyra86157;Parent=Phyra86157;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_498 . CDS 10343 10579 . - 0 ID=Phyra86157;Parent=Phyra86157;rank=2 scaffold_498 . exon 10343 10579 . - . ID=Phyra86157.2;Parent=Phyra86157;constitutive=1;rank=2 scaffold_498 . CDS 10647 10931 . - 0 ID=Phyra86157;Parent=Phyra86157;rank=1 scaffold_498 . exon 10647 10931 . - . ID=Phyra86157.1;Parent=Phyra86157;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_496 1 11389 scaffold_496 . repeat_region 724 753 . ? . description=trf scaffold_496 . repeat_region 724 753 . ? . description=dust scaffold_496 . biological_region 1882 1885 0.999 - . logic_name=eponine scaffold_496 . repeat_region 2332 2610 . ? . description=trf scaffold_496 . biological_region 2700 2704 0.999 + . logic_name=eponine scaffold_496 . biological_region 3365 3366 0.999 - . logic_name=eponine scaffold_496 . biological_region 3425 3428 0.999 - . logic_name=eponine scaffold_496 . biological_region 3939 3941 0.999 + . logic_name=eponine scaffold_496 . biological_region 4011 4019 0.999 - . logic_name=eponine scaffold_496 . repeat_region 5302 10135 . ? . description=dust scaffold_496 ensembl protein_coding_gene 1546 2760 . + . ID=Phyra86154;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_496000001;logic_name=jgi_phyra1 scaffold_496 ensembl transcript 1546 2760 . + . ID=Phyra86154;Parent=Phyra86154;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_496 . CDS 1546 2760 . + 0 ID=Phyra86154;Parent=Phyra86154;rank=1 scaffold_496 . exon 1546 2760 . + . ID=Phyra86154.1;Parent=Phyra86154;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_494 1 11395 scaffold_494 . repeat_region 881 1681 . ? . description=dust scaffold_494 . repeat_region 3713 7333 . ? . description=dust scaffold_494 . repeat_region 8028 8066 . ? . description=trf scaffold_494 ensembl protein_coding_gene 7902 8676 . - . ID=Phyra86151;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_494000001;logic_name=jgi_phyra1 scaffold_494 ensembl transcript 7902 8676 . - . ID=Phyra86151;Parent=Phyra86151;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_494 . CDS 7902 8113 . - 0 ID=Phyra86151;Parent=Phyra86151;rank=3 scaffold_494 . exon 7902 8113 . - . ID=Phyra86151.3;Parent=Phyra86151;constitutive=1;ensembl_phase=1;rank=3 scaffold_494 . CDS 8344 8607 . - 0 ID=Phyra86151;Parent=Phyra86151;rank=2 scaffold_494 . exon 8344 8607 . - . ID=Phyra86151.2;Parent=Phyra86151;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_494 . CDS 8640 8676 . - 0 ID=Phyra86151;Parent=Phyra86151;rank=1 scaffold_494 . exon 8640 8676 . - . ID=Phyra86151.1;Parent=Phyra86151;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_494 ensembl protein_coding_gene 9433 10468 . - . ID=Phyra86152;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_494000002;logic_name=jgi_phyra1 scaffold_494 ensembl transcript 9433 10468 . - . ID=Phyra86152;Parent=Phyra86152;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_494 . CDS 9433 10053 . - 0 ID=Phyra86152;Parent=Phyra86152;rank=2 scaffold_494 . exon 9433 10053 . - . ID=Phyra86152.2;Parent=Phyra86152;constitutive=1;rank=2 scaffold_494 . CDS 10127 10468 . - 0 ID=Phyra86152;Parent=Phyra86152;rank=1 scaffold_494 . exon 10127 10468 . - . ID=Phyra86152.1;Parent=Phyra86152;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_504 1 11407 scaffold_504 . repeat_region 897 5472 . ? . description=dust scaffold_504 ensembl protein_coding_gene 5617 6069 . + . ID=Phyra50197;biotype=protein_coding;external_name=gwEuk.504.4.1;logic_name=jgi_phyra1 scaffold_504 ensembl transcript 5617 6069 . + . ID=Phyra50197;Parent=Phyra50197;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_504 . CDS 5617 6069 . + 0 ID=Phyra50197;Parent=Phyra50197;rank=1 scaffold_504 . exon 5617 6069 . + . ID=Phyra50197.1;Parent=Phyra50197;constitutive=1;rank=1 scaffold_504 . repeat_region 7416 7547 . ? . description=trf scaffold_504 . biological_region 10322 10322 0.999 + . logic_name=eponine scaffold_504 ensembl protein_coding_gene 7758 11393 . + . ID=Phyra86168;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_504000002;logic_name=jgi_phyra1 scaffold_504 ensembl transcript 7758 11393 . + . ID=Phyra86168;Parent=Phyra86168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_504 . CDS 7758 9733 . + 0 ID=Phyra86168;Parent=Phyra86168;rank=1 scaffold_504 . exon 7758 9733 . + . ID=Phyra86168.1;Parent=Phyra86168;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_504 . CDS 10142 11393 . + 0 ID=Phyra86168;Parent=Phyra86168;rank=2 scaffold_504 . exon 10142 11393 . + . ID=Phyra86168.2;Parent=Phyra86168;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_492 1 11432 scaffold_492 . repeat_region 16 433 . + . description=GypsyPi-1c_I-int scaffold_492 . repeat_region 756 977 . + . description=GypsyPi-1c_I-int scaffold_492 . biological_region 1052 1053 0.999 - . logic_name=eponine scaffold_492 . repeat_region 2092 3161 . ? . description=dust scaffold_492 . repeat_region 3275 3378 . - . description=GypsyPi-1c_I-int scaffold_492 . biological_region 3475 3475 0.999 + . logic_name=eponine scaffold_492 . biological_region 3910 3914 0.999 - . logic_name=eponine scaffold_492 . biological_region 3919 3922 0.999 + . logic_name=eponine scaffold_492 . biological_region 3949 3952 0.999 + . logic_name=eponine scaffold_492 . biological_region 3968 3968 0.999 + . logic_name=eponine scaffold_492 . biological_region 3987 3989 0.999 + . logic_name=eponine scaffold_492 . biological_region 4013 4016 0.999 - . logic_name=eponine scaffold_492 . biological_region 4064 4069 0.999 - . logic_name=eponine scaffold_492 . repeat_region 4602 10262 . ? . description=dust scaffold_492 ensembl pseudogene 22 353 . + . ID=Phyra49776;biotype=pseudogene;external_name=gwEuk.492.2.1;logic_name=jgi_phyra1 scaffold_492 ensembl pseudogene 22 353 . + . ID=Phyra49776;Parent=Phyra49776;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_492 . exon 22 353 . + . ID=Phyra49776.1;Parent=Phyra49776;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_492 ensembl protein_coding_gene 3274 4023 . - . ID=Phyra86149;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_492000001;logic_name=jgi_phyra1 scaffold_492 ensembl transcript 3274 4023 . - . ID=Phyra86149;Parent=Phyra86149;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_492 . CDS 3274 4023 . - 0 ID=Phyra86149;Parent=Phyra86149;rank=1 scaffold_492 . exon 3274 4023 . - . ID=Phyra86149.1;Parent=Phyra86149;constitutive=1;rank=1 scaffold_492 . repeat_region 11228 11266 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_491 1 11434 scaffold_491 . repeat_region 264 336 . ? . description=trf scaffold_491 . repeat_region 312 468 . ? . description=trf scaffold_491 . repeat_region 314 468 . ? . description=trf scaffold_491 . repeat_region 380 661 . ? . description=trf scaffold_491 . repeat_region 446 516 . ? . description=trf scaffold_491 . repeat_region 492 580 . ? . description=trf scaffold_491 . repeat_region 525 742 . ? . description=trf scaffold_491 . repeat_region 560 630 . ? . description=trf scaffold_491 . repeat_region 639 709 . ? . description=trf scaffold_491 . repeat_region 687 836 . ? . description=trf scaffold_491 . repeat_region 689 836 . ? . description=trf scaffold_491 . repeat_region 837 2526 . ? . description=dust scaffold_491 . biological_region 3256 3258 0.999 + . logic_name=eponine scaffold_491 . biological_region 4329 4330 0.999 - . logic_name=eponine scaffold_491 . repeat_region 5067 5104 . ? . description=trf scaffold_491 . biological_region 5181 5187 0.999 + . logic_name=eponine scaffold_491 ensembl protein_coding_gene 3100 3711 . - . ID=Phyra86146;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_491000001;logic_name=jgi_phyra1 scaffold_491 ensembl transcript 3100 3711 . - . ID=Phyra86146;Parent=Phyra86146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_491 . CDS 3100 3711 . - 0 ID=Phyra86146;Parent=Phyra86146;rank=1 scaffold_491 . exon 3100 3711 . - . ID=Phyra86146.1;Parent=Phyra86146;constitutive=1;rank=1 scaffold_491 ensembl protein_coding_gene 4068 7087 . + . ID=Phyra86147;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_491000002;logic_name=jgi_phyra1 scaffold_491 ensembl transcript 4068 7087 . + . ID=Phyra86147;Parent=Phyra86147;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_491 . CDS 4068 6902 . + 0 ID=Phyra86147;Parent=Phyra86147;rank=1 scaffold_491 . exon 4068 6902 . + . ID=Phyra86147.1;Parent=Phyra86147;constitutive=1;rank=1 scaffold_491 . CDS 7052 7087 . + 0 ID=Phyra86147;Parent=Phyra86147;rank=2 scaffold_491 . exon 7052 7087 . + . ID=Phyra86147.2;Parent=Phyra86147;constitutive=1;rank=2 scaffold_491 ensembl protein_coding_gene 10140 11374 . + . ID=Phyra86148;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_491000003;logic_name=jgi_phyra1 scaffold_491 ensembl transcript 10140 11374 . + . ID=Phyra86148;Parent=Phyra86148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_491 . CDS 10140 10216 . + 0 ID=Phyra86148;Parent=Phyra86148;rank=1 scaffold_491 . exon 10140 10216 . + . ID=Phyra86148.1;Parent=Phyra86148;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_491 . CDS 10492 10727 . + 0 ID=Phyra86148;Parent=Phyra86148;rank=2 scaffold_491 . exon 10492 10727 . + . ID=Phyra86148.2;Parent=Phyra86148;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_491 . CDS 10776 11374 . + 0 ID=Phyra86148;Parent=Phyra86148;rank=3 scaffold_491 . exon 10776 11374 . + . ID=Phyra86148.3;Parent=Phyra86148;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_489 1 11474 scaffold_489 . repeat_region 177 184 . ? . description=dust scaffold_489 . repeat_region 7647 7669 . ? . description=trf scaffold_489 ensembl protein_coding_gene 6070 6530 . - . ID=Phyra86144;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_489000001;logic_name=jgi_phyra1 scaffold_489 ensembl transcript 6070 6530 . - . ID=Phyra86144;Parent=Phyra86144;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_489 . CDS 6070 6216 . - 0 ID=Phyra86144;Parent=Phyra86144;rank=2 scaffold_489 . exon 6070 6216 . - . ID=Phyra86144.2;Parent=Phyra86144;constitutive=1;rank=2 scaffold_489 . CDS 6243 6530 . - 0 ID=Phyra86144;Parent=Phyra86144;rank=1 scaffold_489 . exon 6243 6530 . - . ID=Phyra86144.1;Parent=Phyra86144;constitutive=1;rank=1 scaffold_489 ensembl protein_coding_gene 10346 10735 . + . ID=Phyra86145;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_489000002;logic_name=jgi_phyra1 scaffold_489 ensembl transcript 10346 10735 . + . ID=Phyra86145;Parent=Phyra86145;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_489 . CDS 10346 10735 . + 0 ID=Phyra86145;Parent=Phyra86145;rank=1 scaffold_489 . exon 10346 10735 . + . ID=Phyra86145.1;Parent=Phyra86145;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_495 1 11504 scaffold_495 . repeat_region 29 71 . ? . description=trf scaffold_495 . biological_region 3027 3029 0.999 - . logic_name=eponine scaffold_495 . biological_region 3639 3640 0.999 + . logic_name=eponine scaffold_495 . biological_region 3760 3764 0.999 - . logic_name=eponine scaffold_495 . biological_region 4100 4103 0.999 + . logic_name=eponine scaffold_495 . repeat_region 4307 7677 . ? . description=dust scaffold_495 ensembl protein_coding_gene 1494 4179 . + . ID=Phyra86153;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_495000001;logic_name=jgi_phyra1 scaffold_495 ensembl transcript 1494 4179 . + . ID=Phyra86153;Parent=Phyra86153;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_495 . CDS 1494 1565 . + 0 ID=Phyra86153;Parent=Phyra86153;rank=1 scaffold_495 . exon 1494 1565 . + . ID=Phyra86153.1;Parent=Phyra86153;constitutive=1;rank=1 scaffold_495 . CDS 1656 2507 . + 0 ID=Phyra86153;Parent=Phyra86153;rank=2 scaffold_495 . exon 1656 2507 . + . ID=Phyra86153.2;Parent=Phyra86153;constitutive=1;rank=2 scaffold_495 . CDS 2546 2657 . + 0 ID=Phyra86153;Parent=Phyra86153;rank=3 scaffold_495 . exon 2546 2657 . + . ID=Phyra86153.3;Parent=Phyra86153;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_495 . CDS 2725 3486 . + 0 ID=Phyra86153;Parent=Phyra86153;rank=4 scaffold_495 . exon 2725 3486 . + . ID=Phyra86153.4;Parent=Phyra86153;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_495 . CDS 3567 4052 . + 0 ID=Phyra86153;Parent=Phyra86153;rank=5 scaffold_495 . exon 3567 4052 . + . ID=Phyra86153.5;Parent=Phyra86153;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_495 . CDS 4166 4179 . + 0 ID=Phyra86153;Parent=Phyra86153;rank=6 scaffold_495 . exon 4166 4179 . + . ID=Phyra86153.6;Parent=Phyra86153;constitutive=1;ensembl_phase=1;rank=6 ##gff-version 3 ##sequence-region scaffold_487 1 11513 scaffold_487 . repeat_region 2037 6410 . ? . description=dust scaffold_487 . biological_region 6859 6862 0.999 + . logic_name=eponine scaffold_487 . biological_region 6961 6965 0.999 + . logic_name=eponine scaffold_487 . repeat_region 7496 9462 . + . description=GypsyPi-1c_I-int scaffold_487 . biological_region 10343 10344 0.999 - . logic_name=eponine scaffold_487 . biological_region 10383 10386 0.999 - . logic_name=eponine scaffold_487 . biological_region 11228 11231 0.999 + . logic_name=eponine scaffold_487 ensembl protein_coding_gene 7211 9248 . + . ID=Phyra86141;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_487000001;logic_name=jgi_phyra1 scaffold_487 ensembl transcript 7211 9248 . + . ID=Phyra86141;Parent=Phyra86141;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_487 . CDS 7211 8176 . + 0 ID=Phyra86141;Parent=Phyra86141;rank=1 scaffold_487 . exon 7211 8176 . + . ID=Phyra86141.1;Parent=Phyra86141;constitutive=1;rank=1 scaffold_487 . CDS 8240 8449 . + 0 ID=Phyra86141;Parent=Phyra86141;rank=2 scaffold_487 . exon 8240 8449 . + . ID=Phyra86141.2;Parent=Phyra86141;constitutive=1;rank=2 scaffold_487 . CDS 8753 8937 . + 0 ID=Phyra86141;Parent=Phyra86141;rank=3 scaffold_487 . exon 8753 8937 . + . ID=Phyra86141.3;Parent=Phyra86141;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_487 . CDS 9040 9105 . + 0 ID=Phyra86141;Parent=Phyra86141;rank=4 scaffold_487 . exon 9040 9105 . + . ID=Phyra86141.4;Parent=Phyra86141;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_487 . CDS 9197 9248 . + 0 ID=Phyra86141;Parent=Phyra86141;rank=5 scaffold_487 . exon 9197 9248 . + . ID=Phyra86141.5;Parent=Phyra86141;constitutive=1;ensembl_phase=2;rank=5 ##gff-version 3 ##sequence-region scaffold_486 1 11525 scaffold_486 . repeat_region 1926 3131 . ? . description=dust scaffold_486 . repeat_region 4854 10664 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_472 1 11542 scaffold_472 . repeat_region 1336 2963 . ? . description=dust scaffold_472 . biological_region 3048 3053 0.999 + . logic_name=eponine scaffold_472 . repeat_region 3259 3341 . ? . description=trf scaffold_472 . repeat_region 3260 3336 . ? . description=trf scaffold_472 . repeat_region 3843 3961 . ? . description=trf scaffold_472 . repeat_region 3916 4001 . ? . description=trf scaffold_472 . repeat_region 4016 4065 . ? . description=dust scaffold_472 . repeat_region 4138 4180 . ? . description=trf scaffold_472 . repeat_region 4139 4251 . ? . description=trf scaffold_472 . repeat_region 4156 4205 . ? . description=trf scaffold_472 . repeat_region 4182 4250 . ? . description=trf scaffold_472 . repeat_region 4198 4247 . ? . description=trf scaffold_472 . repeat_region 4260 4316 . ? . description=trf scaffold_472 . biological_region 4523 4528 0.999 - . logic_name=eponine scaffold_472 . biological_region 4960 4961 0.999 + . logic_name=eponine scaffold_472 . biological_region 5283 5286 0.999 - . logic_name=eponine scaffold_472 . repeat_region 5346 6481 . ? . description=dust scaffold_472 ensembl protein_coding_gene 3575 4269 . - . ID=Phyra86121;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_472000001;logic_name=jgi_phyra1 scaffold_472 ensembl transcript 3575 4269 . - . ID=Phyra86121;Parent=Phyra86121;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_472 . CDS 3575 3979 . - 0 ID=Phyra86121;Parent=Phyra86121;rank=2 scaffold_472 . exon 3575 3979 . - . ID=Phyra86121.2;Parent=Phyra86121;constitutive=1;rank=2 scaffold_472 . CDS 4135 4269 . - 0 ID=Phyra86121;Parent=Phyra86121;rank=1 scaffold_472 . exon 4135 4269 . - . ID=Phyra86121.1;Parent=Phyra86121;constitutive=1;rank=1 scaffold_472 ensembl protein_coding_gene 4818 5123 . + . ID=Phyra86122;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_472000002;logic_name=jgi_phyra1 scaffold_472 ensembl transcript 4818 5123 . + . ID=Phyra86122;Parent=Phyra86122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_472 . CDS 4818 5123 . + 0 ID=Phyra86122;Parent=Phyra86122;rank=1 scaffold_472 . exon 4818 5123 . + . ID=Phyra86122.1;Parent=Phyra86122;constitutive=1;rank=1 scaffold_472 ensembl protein_coding_gene 6547 7395 . - . ID=Phyra86123;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_472000003;logic_name=jgi_phyra1 scaffold_472 ensembl transcript 6547 7395 . - . ID=Phyra86123;Parent=Phyra86123;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_472 . CDS 6547 7395 . - 0 ID=Phyra86123;Parent=Phyra86123;rank=1 scaffold_472 . exon 6547 7395 . - . ID=Phyra86123.1;Parent=Phyra86123;constitutive=1;rank=1 scaffold_472 ensembl protein_coding_gene 10145 10997 . - . ID=Phyra86124;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_472000004;logic_name=jgi_phyra1 scaffold_472 ensembl transcript 10145 10997 . - . ID=Phyra86124;Parent=Phyra86124;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_472 . CDS 10145 10591 . - 0 ID=Phyra86124;Parent=Phyra86124;rank=3 scaffold_472 . exon 10145 10591 . - . ID=Phyra86124.3;Parent=Phyra86124;constitutive=1;rank=3 scaffold_472 . CDS 10659 10916 . - 0 ID=Phyra86124;Parent=Phyra86124;rank=2 scaffold_472 . exon 10659 10916 . - . ID=Phyra86124.2;Parent=Phyra86124;constitutive=1;rank=2 scaffold_472 . CDS 10980 10997 . - 0 ID=Phyra86124;Parent=Phyra86124;rank=1 scaffold_472 . exon 10980 10997 . - . ID=Phyra86124.1;Parent=Phyra86124;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_490 1 11553 scaffold_490 . repeat_region 4 1255 . - . description=GypsyPi-1c_I-int scaffold_490 . repeat_region 1256 2437 . ? . description=dust scaffold_490 . repeat_region 2438 2545 . - . description=GypsyPi-1c_I-int scaffold_490 . biological_region 3018 3019 0.999 - . logic_name=eponine scaffold_490 . biological_region 3070 3074 0.999 - . logic_name=eponine scaffold_490 . biological_region 3173 3176 0.999 - . logic_name=eponine scaffold_490 . biological_region 3224 3227 0.999 - . logic_name=eponine scaffold_490 . repeat_region 3292 4455 . ? . description=dust scaffold_490 . repeat_region 5630 5692 . ? . description=trf scaffold_490 . repeat_region 5633 5692 . ? . description=dust scaffold_490 ensembl protein_coding_gene 127 381 . - . ID=Phyra49774;biotype=protein_coding;external_name=gwEuk.490.2.1;logic_name=jgi_phyra1 scaffold_490 ensembl transcript 127 381 . - . ID=Phyra49774;Parent=Phyra49774;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_490 . CDS 127 381 . - 0 ID=Phyra49774;Parent=Phyra49774;rank=1 scaffold_490 . exon 127 381 . - . ID=Phyra49774.1;Parent=Phyra49774;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_483 1 11581 scaffold_483 . repeat_region 2862 7151 . ? . description=dust scaffold_483 ensembl protein_coding_gene 642 2542 . - . ID=Phyra86137;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_483000001;logic_name=jgi_phyra1 scaffold_483 ensembl transcript 642 2542 . - . ID=Phyra86137;Parent=Phyra86137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_483 . CDS 642 1063 . - 0 ID=Phyra86137;Parent=Phyra86137;rank=2 scaffold_483 . exon 642 1063 . - . ID=Phyra86137.2;Parent=Phyra86137;constitutive=1;ensembl_phase=1;rank=2 scaffold_483 . CDS 1135 2542 . - 0 ID=Phyra86137;Parent=Phyra86137;rank=1 scaffold_483 . exon 1135 2542 . - . ID=Phyra86137.1;Parent=Phyra86137;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_483 . repeat_region 7353 7376 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_484 1 11582 scaffold_484 . repeat_region 1067 1731 . ? . description=dust scaffold_484 . repeat_region 4563 4571 . ? . description=dust scaffold_484 . repeat_region 5142 5810 . ? . description=dust scaffold_484 ensembl protein_coding_gene 1929 4192 . - . ID=Phyra86138;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_484000001;logic_name=jgi_phyra1 scaffold_484 ensembl transcript 1929 4192 . - . ID=Phyra86138;Parent=Phyra86138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_484 . CDS 1929 2371 . - 0 ID=Phyra86138;Parent=Phyra86138;rank=2 scaffold_484 . exon 1929 2371 . - . ID=Phyra86138.2;Parent=Phyra86138;constitutive=1;ensembl_phase=1;rank=2 scaffold_484 . CDS 2470 4192 . - 0 ID=Phyra86138;Parent=Phyra86138;rank=1 scaffold_484 . exon 2470 4192 . - . ID=Phyra86138.1;Parent=Phyra86138;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_484 . repeat_region 5886 6164 . - . description=GypsyPi-1c_I-int scaffold_484 . biological_region 6374 6377 0.999 - . logic_name=eponine scaffold_484 . repeat_region 6419 8752 . - . description=GypsyPi-1c_I-int scaffold_484 . biological_region 9226 9226 0.999 - . logic_name=eponine scaffold_484 . biological_region 9277 9282 0.999 - . logic_name=eponine scaffold_484 . biological_region 9316 9318 0.999 + . logic_name=eponine scaffold_484 . biological_region 9355 9355 0.999 + . logic_name=eponine scaffold_484 . biological_region 9379 9384 0.999 - . logic_name=eponine scaffold_484 . biological_region 9431 9435 0.999 - . logic_name=eponine scaffold_484 . repeat_region 10475 10591 . - . description=GypsyPi-1c_I-int scaffold_484 . biological_region 10946 10950 0.999 - . logic_name=eponine scaffold_484 ensembl protein_coding_gene 6406 11229 . - . ID=Phyra86139;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_484000002;logic_name=jgi_phyra1 scaffold_484 ensembl transcript 6406 11229 . - . ID=Phyra86139;Parent=Phyra86139;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_484 . CDS 6406 6672 . - 0 ID=Phyra86139;Parent=Phyra86139;rank=6 scaffold_484 . exon 6406 6672 . - . ID=Phyra86139.6;Parent=Phyra86139;constitutive=1;rank=6 scaffold_484 . CDS 6796 7488 . - 0 ID=Phyra86139;Parent=Phyra86139;rank=5 scaffold_484 . exon 6796 7488 . - . ID=Phyra86139.5;Parent=Phyra86139;constitutive=1;rank=5 scaffold_484 . CDS 7792 9879 . - 0 ID=Phyra86139;Parent=Phyra86139;rank=4 scaffold_484 . exon 7792 9879 . - . ID=Phyra86139.4;Parent=Phyra86139;constitutive=1;rank=4 scaffold_484 . CDS 10081 10224 . - 0 ID=Phyra86139;Parent=Phyra86139;rank=3 scaffold_484 . exon 10081 10224 . - . ID=Phyra86139.3;Parent=Phyra86139;constitutive=1;rank=3 scaffold_484 . CDS 10348 10770 . - 0 ID=Phyra86139;Parent=Phyra86139;rank=2 scaffold_484 . exon 10348 10770 . - . ID=Phyra86139.2;Parent=Phyra86139;constitutive=1;rank=2 scaffold_484 . CDS 10966 11229 . - 0 ID=Phyra86139;Parent=Phyra86139;rank=1 scaffold_484 . exon 10966 11229 . - . ID=Phyra86139.1;Parent=Phyra86139;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_485 1 11591 scaffold_485 . biological_region 1921 1925 0.999 + . logic_name=eponine scaffold_485 . biological_region 1926 1926 0.999 - . logic_name=eponine scaffold_485 . biological_region 1946 1947 0.999 + . logic_name=eponine scaffold_485 . repeat_region 2149 2198 . ? . description=dust scaffold_485 . repeat_region 3159 7019 . ? . description=dust scaffold_485 ensembl protein_coding_gene 250 582 . + . ID=Phyra86140;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_485000001;logic_name=jgi_phyra1 scaffold_485 ensembl transcript 250 582 . + . ID=Phyra86140;Parent=Phyra86140;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_485 . CDS 250 582 . + 0 ID=Phyra86140;Parent=Phyra86140;rank=1 scaffold_485 . exon 250 582 . + . ID=Phyra86140.1;Parent=Phyra86140;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_482 1 11601 scaffold_482 . biological_region 688 691 0.999 - . logic_name=eponine scaffold_482 . repeat_region 1796 6932 . ? . description=dust scaffold_482 ensembl protein_coding_gene 485 1638 . + . ID=Phyra86136;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_482000001;logic_name=jgi_phyra1 scaffold_482 ensembl transcript 485 1638 . + . ID=Phyra86136;Parent=Phyra86136;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_482 . CDS 485 950 . + 0 ID=Phyra86136;Parent=Phyra86136;rank=1 scaffold_482 . exon 485 950 . + . ID=Phyra86136.1;Parent=Phyra86136;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_482 . CDS 1105 1591 . + 0 ID=Phyra86136;Parent=Phyra86136;rank=2 scaffold_482 . exon 1105 1591 . + . ID=Phyra86136.2;Parent=Phyra86136;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_482 . CDS 1623 1638 . + 0 ID=Phyra86136;Parent=Phyra86136;rank=3 scaffold_482 . exon 1623 1638 . + . ID=Phyra86136.3;Parent=Phyra86136;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_480 1 11611 scaffold_480 . repeat_region 842 867 . ? . description=trf scaffold_480 . repeat_region 842 867 . ? . description=dust scaffold_480 . repeat_region 1365 4366 . ? . description=dust scaffold_480 . repeat_region 5592 5599 . ? . description=dust scaffold_480 . biological_region 10712 10715 0.999 - . logic_name=eponine scaffold_480 ensembl protein_coding_gene 6150 6626 . - . ID=Phyra86133;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_480000001;logic_name=jgi_phyra1 scaffold_480 ensembl transcript 6150 6626 . - . ID=Phyra86133;Parent=Phyra86133;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_480 . CDS 6150 6626 . - 0 ID=Phyra86133;Parent=Phyra86133;rank=1 scaffold_480 . exon 6150 6626 . - . ID=Phyra86133.1;Parent=Phyra86133;constitutive=1;rank=1 scaffold_480 ensembl protein_coding_gene 8058 9019 . + . ID=Phyra86134;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_480000002;logic_name=jgi_phyra1 scaffold_480 ensembl transcript 8058 9019 . + . ID=Phyra86134;Parent=Phyra86134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_480 . CDS 8058 8948 . + 0 ID=Phyra86134;Parent=Phyra86134;rank=1 scaffold_480 . exon 8058 8948 . + . ID=Phyra86134.1;Parent=Phyra86134;constitutive=1;rank=1 scaffold_480 . CDS 9017 9019 . + 0 ID=Phyra86134;Parent=Phyra86134;rank=2 scaffold_480 . exon 9017 9019 . + . ID=Phyra86134.2;Parent=Phyra86134;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_227 1 11683 scaffold_227 . repeat_region 1327 1335 . ? . description=dust scaffold_227 . repeat_region 1931 5884 . ? . description=dust scaffold_227 . biological_region 9382 9382 0.999 + . logic_name=eponine scaffold_227 . biological_region 9591 9592 0.999 - . logic_name=eponine scaffold_227 . biological_region 9927 9927 0.999 + . logic_name=eponine scaffold_227 . biological_region 10136 10137 0.999 - . logic_name=eponine scaffold_227 . biological_region 10472 10472 0.999 + . logic_name=eponine scaffold_227 . biological_region 10681 10682 0.999 - . logic_name=eponine scaffold_227 . biological_region 11017 11017 0.999 + . logic_name=eponine scaffold_227 . biological_region 11226 11227 0.999 - . logic_name=eponine scaffold_227 . biological_region 11562 11562 0.999 + . logic_name=eponine scaffold_227 . biological_region 11681 11682 0.999 - . logic_name=eponine scaffold_227 ensembl tRNA_gene 10754 10825 . - . ID=EPrPRAG00000000012;biotype=tRNA;description=tRNA-Ala for anticodon CGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_227 ensembl transcript 10754 10825 . - . ID=EPrPRAT00000000012;Parent=EPrPRAG00000000012;biotype=tRNA;logic_name=ncrna_eg scaffold_227 ensembl tRNA_gene 9664 9735 . - . ID=EPrPRAG00000000035;biotype=tRNA;description=tRNA-Ala for anticodon CGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_227 ensembl transcript 9664 9735 . - . ID=EPrPRAT00000000035;Parent=EPrPRAG00000000035;biotype=tRNA;logic_name=ncrna_eg scaffold_227 ensembl tRNA_gene 10209 10280 . - . ID=EPrPRAG00000000118;biotype=tRNA;description=tRNA-Ala for anticodon CGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_227 ensembl transcript 10209 10280 . - . ID=EPrPRAT00000000118;Parent=EPrPRAG00000000118;biotype=tRNA;logic_name=ncrna_eg scaffold_227 ensembl tRNA_gene 11299 11370 . - . ID=EPrPRAG00000000126;biotype=tRNA;description=tRNA-Ala for anticodon CGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_227 ensembl transcript 11299 11370 . - . ID=EPrPRAT00000000126;Parent=EPrPRAG00000000126;biotype=tRNA;logic_name=ncrna_eg scaffold_227 . exon 10754 10825 . - . ID=EPrPRAE00000000012;Parent=EPrPRAT00000000012;constitutive=1;rank=1 scaffold_227 . exon 9664 9735 . - . ID=EPrPRAE00000000035;Parent=EPrPRAT00000000035;constitutive=1;rank=1 scaffold_227 . exon 10209 10280 . - . ID=EPrPRAE00000000118;Parent=EPrPRAT00000000118;constitutive=1;rank=1 scaffold_227 . exon 11299 11370 . - . ID=EPrPRAE00000000126;Parent=EPrPRAT00000000126;constitutive=1;rank=1 scaffold_227 ensembl protein_coding_gene 8873 9034 . + . ID=Phyra44940;biotype=protein_coding;external_name=gwEuk.227.5.1;logic_name=jgi_phyra1 scaffold_227 ensembl transcript 8873 9034 . + . ID=Phyra44940;Parent=Phyra44940;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_227 . CDS 8873 9034 . + 0 ID=Phyra44940;Parent=Phyra44940;rank=1 scaffold_227 . exon 8873 9034 . + . ID=Phyra44940.1;Parent=Phyra44940;constitutive=1;rank=1 scaffold_227 ensembl protein_coding_gene 6016 6516 . + . ID=Phyra85550;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_227000001;logic_name=jgi_phyra1 scaffold_227 ensembl transcript 6016 6516 . + . ID=Phyra85550;Parent=Phyra85550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_227 . CDS 6016 6516 . + 0 ID=Phyra85550;Parent=Phyra85550;rank=1 scaffold_227 . exon 6016 6516 . + . ID=Phyra85550.1;Parent=Phyra85550;constitutive=1;rank=1 scaffold_227 ensembl protein_coding_gene 10832 11221 . + . ID=Phyra85551;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_227000002;logic_name=jgi_phyra1 scaffold_227 ensembl transcript 10832 11221 . + . ID=Phyra85551;Parent=Phyra85551;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_227 . CDS 10832 11221 . + 0 ID=Phyra85551;Parent=Phyra85551;rank=1 scaffold_227 . exon 10832 11221 . + . ID=Phyra85551.1;Parent=Phyra85551;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_488 1 11723 scaffold_488 . repeat_region 1640 1689 . ? . description=dust scaffold_488 . biological_region 2390 2392 0.999 + . logic_name=eponine scaffold_488 . biological_region 2423 2426 0.999 - . logic_name=eponine scaffold_488 . biological_region 2954 2954 0.999 + . logic_name=eponine scaffold_488 . repeat_region 3076 3084 . ? . description=dust scaffold_488 ensembl protein_coding_gene 2142 3582 . - . ID=Phyra86142;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_488000001;logic_name=jgi_phyra1 scaffold_488 ensembl transcript 2142 3582 . - . ID=Phyra86142;Parent=Phyra86142;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_488 . CDS 2142 2149 . - 0 ID=Phyra86142;Parent=Phyra86142;rank=5 scaffold_488 . exon 2142 2149 . - . ID=Phyra86142.5;Parent=Phyra86142;constitutive=1;ensembl_phase=1;rank=5 scaffold_488 . CDS 2359 2694 . - 0 ID=Phyra86142;Parent=Phyra86142;rank=4 scaffold_488 . exon 2359 2694 . - . ID=Phyra86142.4;Parent=Phyra86142;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_488 . CDS 2744 2899 . - 0 ID=Phyra86142;Parent=Phyra86142;rank=3 scaffold_488 . exon 2744 2899 . - . ID=Phyra86142.3;Parent=Phyra86142;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_488 . CDS 3221 3417 . - 0 ID=Phyra86142;Parent=Phyra86142;rank=2 scaffold_488 . exon 3221 3417 . - . ID=Phyra86142.2;Parent=Phyra86142;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_488 . CDS 3446 3582 . - 0 ID=Phyra86142;Parent=Phyra86142;rank=1 scaffold_488 . exon 3446 3582 . - . ID=Phyra86142.1;Parent=Phyra86142;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_488 ensembl protein_coding_gene 7647 9383 . + . ID=Phyra86143;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_488000002;logic_name=jgi_phyra1 scaffold_488 ensembl transcript 7647 9383 . + . ID=Phyra86143;Parent=Phyra86143;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_488 . CDS 7647 9383 . + 0 ID=Phyra86143;Parent=Phyra86143;rank=1 scaffold_488 . exon 7647 9383 . + . ID=Phyra86143.1;Parent=Phyra86143;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_477 1 11738 scaffold_477 . repeat_region 1487 2714 . ? . description=dust scaffold_477 . repeat_region 4861 4869 . ? . description=dust scaffold_477 ensembl protein_coding_gene 9238 10131 . + . ID=Phyra86129;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_477000001;logic_name=jgi_phyra1 scaffold_477 ensembl transcript 9238 10131 . + . ID=Phyra86129;Parent=Phyra86129;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_477 . CDS 9238 9453 . + 0 ID=Phyra86129;Parent=Phyra86129;rank=1 scaffold_477 . exon 9238 9453 . + . ID=Phyra86129.1;Parent=Phyra86129;constitutive=1;rank=1 scaffold_477 . CDS 9625 9975 . + 0 ID=Phyra86129;Parent=Phyra86129;rank=2 scaffold_477 . exon 9625 9975 . + . ID=Phyra86129.2;Parent=Phyra86129;constitutive=1;rank=2 scaffold_477 . CDS 10054 10131 . + 0 ID=Phyra86129;Parent=Phyra86129;rank=3 scaffold_477 . exon 10054 10131 . + . ID=Phyra86129.3;Parent=Phyra86129;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_478 1 11743 scaffold_478 . biological_region 279 286 0.999 - . logic_name=eponine scaffold_478 . biological_region 341 345 0.999 - . logic_name=eponine scaffold_478 . biological_region 2896 2898 0.999 - . logic_name=eponine scaffold_478 . biological_region 5825 5827 0.999 - . logic_name=eponine scaffold_478 ensembl protein_coding_gene 683 8355 . - . ID=Phyra86130;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_478000001;logic_name=jgi_phyra1 scaffold_478 ensembl transcript 683 8355 . - . ID=Phyra86130;Parent=Phyra86130;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_478 . CDS 683 1914 . - 0 ID=Phyra86130;Parent=Phyra86130;rank=5 scaffold_478 . exon 683 1914 . - . ID=Phyra86130.5;Parent=Phyra86130;constitutive=1;ensembl_phase=1;rank=5 scaffold_478 . CDS 2065 2506 . - 0 ID=Phyra86130;Parent=Phyra86130;rank=4 scaffold_478 . exon 2065 2506 . - . ID=Phyra86130.4;Parent=Phyra86130;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_478 . CDS 2702 6038 . - 0 ID=Phyra86130;Parent=Phyra86130;rank=3 scaffold_478 . exon 2702 6038 . - . ID=Phyra86130.3;Parent=Phyra86130;constitutive=1;ensembl_phase=2;rank=3 scaffold_478 . CDS 6431 6851 . - 0 ID=Phyra86130;Parent=Phyra86130;rank=2 scaffold_478 . CDS 6885 8355 . - 0 ID=Phyra86130;Parent=Phyra86130;rank=1 scaffold_478 . repeat_region 9028 9080 . ? . description=trf scaffold_478 . repeat_region 9546 9595 . ? . description=dust scaffold_478 . exon 6431 6851 . - . ID=Phyra86130.2;Parent=Phyra86130;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_478 . exon 6885 8355 . - . ID=Phyra86130.1;Parent=Phyra86130;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_478 ensembl protein_coding_gene 9690 11704 . + . ID=Phyra86131;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_478000002;logic_name=jgi_phyra1 scaffold_478 ensembl transcript 9690 11704 . + . ID=Phyra86131;Parent=Phyra86131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_478 . CDS 9690 11704 . + 0 ID=Phyra86131;Parent=Phyra86131;rank=1 scaffold_478 . exon 9690 11704 . + . ID=Phyra86131.1;Parent=Phyra86131;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_479 1 11772 scaffold_479 . repeat_region 1043 1092 . ? . description=dust scaffold_479 . repeat_region 1210 1222 . ? . description=dust scaffold_479 . biological_region 1673 1677 0.999 + . logic_name=eponine scaffold_479 . repeat_region 2108 5120 . ? . description=dust scaffold_479 ensembl protein_coding_gene 6377 7269 . - . ID=Phyra86132;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_479000001;logic_name=jgi_phyra1 scaffold_479 ensembl transcript 6377 7269 . - . ID=Phyra86132;Parent=Phyra86132;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_479 . CDS 6377 6853 . - 0 ID=Phyra86132;Parent=Phyra86132;rank=3 scaffold_479 . exon 6377 6853 . - . ID=Phyra86132.3;Parent=Phyra86132;constitutive=1;rank=3 scaffold_479 . CDS 6978 7151 . - 0 ID=Phyra86132;Parent=Phyra86132;rank=2 scaffold_479 . exon 6978 7151 . - . ID=Phyra86132.2;Parent=Phyra86132;constitutive=1;rank=2 scaffold_479 . CDS 7195 7269 . - 0 ID=Phyra86132;Parent=Phyra86132;rank=1 scaffold_479 . exon 7195 7269 . - . ID=Phyra86132.1;Parent=Phyra86132;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_476 1 11821 scaffold_476 . repeat_region 980 1010 . ? . description=trf scaffold_476 . biological_region 1123 1125 0.999 - . logic_name=eponine scaffold_476 . repeat_region 1179 3264 . ? . description=dust scaffold_476 . repeat_region 4215 4222 . ? . description=dust scaffold_476 . repeat_region 4426 4458 . ? . description=dust scaffold_476 . biological_region 4897 4901 0.999 + . logic_name=eponine scaffold_476 . repeat_region 5606 10761 . ? . description=dust scaffold_476 ensembl protein_coding_gene 380 1127 . + . ID=Phyra86128;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_476000001;logic_name=jgi_phyra1 scaffold_476 ensembl transcript 380 1127 . + . ID=Phyra86128;Parent=Phyra86128;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_476 . CDS 380 410 . + 0 ID=Phyra86128;Parent=Phyra86128;rank=1 scaffold_476 . exon 380 410 . + . ID=Phyra86128.1;Parent=Phyra86128;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_476 . CDS 462 1070 . + 0 ID=Phyra86128;Parent=Phyra86128;rank=2 scaffold_476 . exon 462 1070 . + . ID=Phyra86128.2;Parent=Phyra86128;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_476 . CDS 1096 1127 . + 0 ID=Phyra86128;Parent=Phyra86128;rank=3 scaffold_476 . exon 1096 1127 . + . ID=Phyra86128.3;Parent=Phyra86128;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_190 1 11828 scaffold_190 . biological_region 3935 3940 0.999 - . logic_name=eponine scaffold_190 . repeat_region 5804 5826 . ? . description=dust scaffold_190 ensembl protein_coding_gene 4469 4615 . + . ID=Phyra43600;biotype=protein_coding;external_name=gwEuk.190.2.1;logic_name=jgi_phyra1 scaffold_190 ensembl transcript 4469 4615 . + . ID=Phyra43600;Parent=Phyra43600;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_190 . CDS 4469 4615 . + 0 ID=Phyra43600;Parent=Phyra43600;rank=1 scaffold_190 . exon 4469 4615 . + . ID=Phyra43600.1;Parent=Phyra43600;constitutive=1;rank=1 scaffold_190 ensembl protein_coding_gene 38 2372 . - . ID=Phyra85445;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_190000001;logic_name=jgi_phyra1 scaffold_190 ensembl transcript 38 2372 . - . ID=Phyra85445;Parent=Phyra85445;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_190 . CDS 38 2372 . - 0 ID=Phyra85445;Parent=Phyra85445;rank=1 scaffold_190 . exon 38 2372 . - . ID=Phyra85445.1;Parent=Phyra85445;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_190 . repeat_region 10273 10305 . ? . description=trf scaffold_190 . repeat_region 11062 11094 . ? . description=trf scaffold_190 ensembl tRNA_gene 10438 10510 . - . ID=EPrPRAG00000000062;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_190 ensembl transcript 10438 10510 . - . ID=EPrPRAT00000000062;Parent=EPrPRAG00000000062;biotype=tRNA;logic_name=ncrna_eg scaffold_190 ensembl tRNA_gene 11227 11299 . - . ID=EPrPRAG00000000129;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_190 ensembl transcript 11227 11299 . - . ID=EPrPRAT00000000129;Parent=EPrPRAG00000000129;biotype=tRNA;logic_name=ncrna_eg scaffold_190 . exon 10438 10510 . - . ID=EPrPRAE00000000062;Parent=EPrPRAT00000000062;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_190 . exon 11227 11299 . - . ID=EPrPRAE00000000129;Parent=EPrPRAT00000000129;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_475 1 11830 scaffold_475 . repeat_region 885 911 . ? . description=trf scaffold_475 . repeat_region 912 961 . ? . description=dust scaffold_475 . repeat_region 1756 1798 . ? . description=trf scaffold_475 . repeat_region 1904 1931 . ? . description=trf scaffold_475 . repeat_region 1999 2041 . ? . description=trf scaffold_475 . repeat_region 2730 3683 . ? . description=dust scaffold_475 . repeat_region 3709 3777 . ? . description=trf scaffold_475 . repeat_region 4822 7054 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_481 1 11869 scaffold_481 . repeat_region 1631 7293 . ? . description=dust scaffold_481 ensembl protein_coding_gene 171 875 . + . ID=Phyra86135;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_481000001;logic_name=jgi_phyra1 scaffold_481 ensembl transcript 171 875 . + . ID=Phyra86135;Parent=Phyra86135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_481 . CDS 171 179 . + 0 ID=Phyra86135;Parent=Phyra86135;rank=1 scaffold_481 . exon 171 179 . + . ID=Phyra86135.1;Parent=Phyra86135;constitutive=1;rank=1 scaffold_481 . CDS 218 388 . + 0 ID=Phyra86135;Parent=Phyra86135;rank=2 scaffold_481 . exon 218 388 . + . ID=Phyra86135.2;Parent=Phyra86135;constitutive=1;rank=2 scaffold_481 . CDS 438 875 . + 0 ID=Phyra86135;Parent=Phyra86135;rank=3 scaffold_481 . exon 438 875 . + . ID=Phyra86135.3;Parent=Phyra86135;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_474 1 11874 scaffold_474 . repeat_region 2 15 . ? . description=dust scaffold_474 . biological_region 402 406 0.999 + . logic_name=eponine scaffold_474 . repeat_region 636 694 . ? . description=trf scaffold_474 . repeat_region 639 700 . ? . description=trf scaffold_474 . repeat_region 675 721 . ? . description=trf scaffold_474 . biological_region 785 791 0.999 + . logic_name=eponine scaffold_474 . biological_region 1453 1458 0.999 - . logic_name=eponine scaffold_474 . biological_region 2950 2953 0.999 - . logic_name=eponine scaffold_474 . repeat_region 3629 3678 . ? . description=dust scaffold_474 . repeat_region 4092 4121 . ? . description=trf scaffold_474 . repeat_region 4828 4970 . ? . description=dust scaffold_474 ensembl protein_coding_gene 416 3098 . + . ID=Phyra86127;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_474000001;logic_name=jgi_phyra1 scaffold_474 ensembl transcript 416 3098 . + . ID=Phyra86127;Parent=Phyra86127;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_474 . CDS 416 847 . + 0 ID=Phyra86127;Parent=Phyra86127;rank=1 scaffold_474 . exon 416 847 . + . ID=Phyra86127.1;Parent=Phyra86127;constitutive=1;rank=1 scaffold_474 . CDS 891 1209 . + 0 ID=Phyra86127;Parent=Phyra86127;rank=2 scaffold_474 . exon 891 1209 . + . ID=Phyra86127.2;Parent=Phyra86127;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_474 . CDS 1438 1900 . + 0 ID=Phyra86127;Parent=Phyra86127;rank=3 scaffold_474 . exon 1438 1900 . + . ID=Phyra86127.3;Parent=Phyra86127;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_474 . CDS 1930 2064 . + 0 ID=Phyra86127;Parent=Phyra86127;rank=4 scaffold_474 . exon 1930 2064 . + . ID=Phyra86127.4;Parent=Phyra86127;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_474 . CDS 2156 2672 . + 0 ID=Phyra86127;Parent=Phyra86127;rank=5 scaffold_474 . exon 2156 2672 . + . ID=Phyra86127.5;Parent=Phyra86127;constitutive=1;ensembl_phase=2;rank=5 scaffold_474 . CDS 2694 3098 . + 0 ID=Phyra86127;Parent=Phyra86127;rank=6 scaffold_474 . exon 2694 3098 . + . ID=Phyra86127.6;Parent=Phyra86127;constitutive=1;rank=6 ##gff-version 3 ##sequence-region scaffold_470 1 11913 scaffold_470 . repeat_region 1861 1897 . ? . description=trf scaffold_470 . repeat_region 2047 3689 . ? . description=dust scaffold_470 . repeat_region 4246 4324 . ? . description=trf scaffold_470 . repeat_region 4246 4324 . ? . description=dust scaffold_470 . repeat_region 4246 4324 . + . description=(CA)n scaffold_470 ensembl protein_coding_gene 4643 5762 . - . ID=Phyra86117;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_470000001;logic_name=jgi_phyra1 scaffold_470 ensembl transcript 4643 5762 . - . ID=Phyra86117;Parent=Phyra86117;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_470 . CDS 4643 5377 . - 0 ID=Phyra86117;Parent=Phyra86117;rank=2 scaffold_470 . exon 4643 5377 . - . ID=Phyra86117.2;Parent=Phyra86117;constitutive=1;rank=2 scaffold_470 . CDS 5529 5762 . - 0 ID=Phyra86117;Parent=Phyra86117;rank=1 scaffold_470 . exon 5529 5762 . - . ID=Phyra86117.1;Parent=Phyra86117;constitutive=1;rank=1 scaffold_470 . biological_region 6483 6485 0.999 + . logic_name=eponine scaffold_470 . biological_region 7437 7440 0.999 + . logic_name=eponine scaffold_470 . repeat_region 8508 8609 . + . description=GypsyPi-1c_I-int scaffold_470 . biological_region 8953 8956 0.999 + . logic_name=eponine scaffold_470 . biological_region 9005 9008 0.999 + . logic_name=eponine scaffold_470 . biological_region 9071 9071 0.999 - . logic_name=eponine scaffold_470 . biological_region 9106 9111 0.999 + . logic_name=eponine scaffold_470 . biological_region 9162 9163 0.999 + . logic_name=eponine scaffold_470 . repeat_region 9964 11912 . + . description=GypsyPi-1c_I-int scaffold_470 ensembl protein_coding_gene 10243 11673 . + . ID=Phyra86118;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_470000002;logic_name=jgi_phyra1 scaffold_470 ensembl transcript 10243 11673 . + . ID=Phyra86118;Parent=Phyra86118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_470 . CDS 10243 10665 . + 0 ID=Phyra86118;Parent=Phyra86118;rank=1 scaffold_470 . exon 10243 10665 . + . ID=Phyra86118.1;Parent=Phyra86118;constitutive=1;rank=1 scaffold_470 . CDS 10708 11066 . + 0 ID=Phyra86118;Parent=Phyra86118;rank=2 scaffold_470 . exon 10708 11066 . + . ID=Phyra86118.2;Parent=Phyra86118;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_470 . CDS 11241 11673 . + 0 ID=Phyra86118;Parent=Phyra86118;rank=3 scaffold_470 . exon 11241 11673 . + . ID=Phyra86118.3;Parent=Phyra86118;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_435 1 11921 scaffold_435 . repeat_region 848 867 . ? . description=trf scaffold_435 . repeat_region 2027 2061 . ? . description=trf scaffold_435 . repeat_region 2652 2701 . ? . description=dust scaffold_435 . biological_region 3464 3471 0.999 + . logic_name=eponine scaffold_435 . repeat_region 5522 6037 . ? . description=dust scaffold_435 ensembl protein_coding_gene 3172 3945 . - . ID=Phyra86050;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_435000001;logic_name=jgi_phyra1 scaffold_435 ensembl transcript 3172 3945 . - . ID=Phyra86050;Parent=Phyra86050;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_435 . CDS 3172 3945 . - 0 ID=Phyra86050;Parent=Phyra86050;rank=1 scaffold_435 . exon 3172 3945 . - . ID=Phyra86050.1;Parent=Phyra86050;constitutive=1;rank=1 scaffold_435 ensembl protein_coding_gene 5244 6969 . - . ID=Phyra86051;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_435000002;logic_name=jgi_phyra1 scaffold_435 ensembl transcript 5244 6969 . - . ID=Phyra86051;Parent=Phyra86051;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_435 . CDS 5244 5293 . - 0 ID=Phyra86051;Parent=Phyra86051;rank=3 scaffold_435 . exon 5244 5293 . - . ID=Phyra86051.3;Parent=Phyra86051;constitutive=1;ensembl_phase=1;rank=3 scaffold_435 . CDS 5383 5476 . - 0 ID=Phyra86051;Parent=Phyra86051;rank=2 scaffold_435 . exon 5383 5476 . - . ID=Phyra86051.2;Parent=Phyra86051;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_435 . CDS 6187 6969 . - 0 ID=Phyra86051;Parent=Phyra86051;rank=1 scaffold_435 . exon 6187 6969 . - . ID=Phyra86051.1;Parent=Phyra86051;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_468 1 11940 scaffold_468 ensembl protein_coding_gene 1063 2283 . + . ID=Phyra86111;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_468000001;logic_name=jgi_phyra1 scaffold_468 ensembl transcript 1063 2283 . + . ID=Phyra86111;Parent=Phyra86111;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_468 . CDS 1063 2283 . + 0 ID=Phyra86111;Parent=Phyra86111;rank=1 scaffold_468 . exon 1063 2283 . + . ID=Phyra86111.1;Parent=Phyra86111;constitutive=1;rank=1 scaffold_468 ensembl protein_coding_gene 4387 5516 . + . ID=Phyra86112;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_468000002;logic_name=jgi_phyra1 scaffold_468 ensembl transcript 4387 5516 . + . ID=Phyra86112;Parent=Phyra86112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_468 . CDS 4387 5383 . + 0 ID=Phyra86112;Parent=Phyra86112;rank=1 scaffold_468 . exon 4387 5383 . + . ID=Phyra86112.1;Parent=Phyra86112;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_468 . CDS 5404 5516 . + 0 ID=Phyra86112;Parent=Phyra86112;rank=2 scaffold_468 . exon 5404 5516 . + . ID=Phyra86112.2;Parent=Phyra86112;constitutive=1;ensembl_phase=1;rank=2 scaffold_468 ensembl protein_coding_gene 6197 7510 . - . ID=Phyra86113;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_468000003;logic_name=jgi_phyra1 scaffold_468 ensembl transcript 6197 7510 . - . ID=Phyra86113;Parent=Phyra86113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_468 . CDS 6197 7510 . - 0 ID=Phyra86113;Parent=Phyra86113;rank=1 scaffold_468 . exon 6197 7510 . - . ID=Phyra86113.1;Parent=Phyra86113;constitutive=1;rank=1 scaffold_468 ensembl protein_coding_gene 7654 8604 . + . ID=Phyra86114;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_468000004;logic_name=jgi_phyra1 scaffold_468 ensembl transcript 7654 8604 . + . ID=Phyra86114;Parent=Phyra86114;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_468 . CDS 7654 8604 . + 0 ID=Phyra86114;Parent=Phyra86114;rank=1 scaffold_468 . exon 7654 8604 . + . ID=Phyra86114.1;Parent=Phyra86114;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_467 1 11964 scaffold_467 . repeat_region 777 1841 . ? . description=dust scaffold_467 . biological_region 2186 2189 0.999 - . logic_name=eponine scaffold_467 . biological_region 3088 3088 0.999 - . logic_name=eponine scaffold_467 . biological_region 3281 3285 0.999 + . logic_name=eponine scaffold_467 . biological_region 3335 3340 0.999 + . logic_name=eponine scaffold_467 . repeat_region 3659 8727 . ? . description=dust scaffold_467 ensembl protein_coding_gene 2489 3482 . - . ID=Phyra86109;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_467000001;logic_name=jgi_phyra1 scaffold_467 ensembl transcript 2489 3482 . - . ID=Phyra86109;Parent=Phyra86109;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_467 . CDS 2489 3238 . - 0 ID=Phyra86109;Parent=Phyra86109;rank=2 scaffold_467 . exon 2489 3238 . - . ID=Phyra86109.2;Parent=Phyra86109;constitutive=1;rank=2 scaffold_467 . CDS 3294 3482 . - 0 ID=Phyra86109;Parent=Phyra86109;rank=1 scaffold_467 . exon 3294 3482 . - . ID=Phyra86109.1;Parent=Phyra86109;constitutive=1;rank=1 scaffold_467 . repeat_region 11653 11789 . ? . description=trf scaffold_467 . repeat_region 11892 11945 . ? . description=trf scaffold_467 ensembl protein_coding_gene 11552 11951 . - . ID=Phyra86110;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_467000002;logic_name=jgi_phyra1 scaffold_467 ensembl transcript 11552 11951 . - . ID=Phyra86110;Parent=Phyra86110;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_467 . CDS 11552 11950 . - 0 ID=Phyra86110;Parent=Phyra86110;rank=1 scaffold_467 . exon 11552 11951 . - . ID=Phyra86110.1;Parent=Phyra86110;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_464 1 11988 scaffold_464 . repeat_region 2112 6823 . ? . description=dust scaffold_464 ensembl protein_coding_gene 29 712 . - . ID=Phyra86102;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_464000001;logic_name=jgi_phyra1 scaffold_464 ensembl transcript 29 712 . - . ID=Phyra86102;Parent=Phyra86102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_464 . CDS 29 712 . - 0 ID=Phyra86102;Parent=Phyra86102;rank=1 scaffold_464 . exon 29 712 . - . ID=Phyra86102.1;Parent=Phyra86102;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_465 1 11996 scaffold_465 . biological_region 998 1004 0.999 - . logic_name=eponine scaffold_465 . biological_region 1074 1077 0.999 - . logic_name=eponine scaffold_465 . biological_region 1090 1090 0.999 - . logic_name=eponine scaffold_465 . biological_region 1132 1134 0.999 + . logic_name=eponine scaffold_465 . biological_region 1143 1150 0.999 - . logic_name=eponine scaffold_465 . biological_region 1172 1174 0.999 + . logic_name=eponine scaffold_465 . biological_region 1199 1205 0.999 + . logic_name=eponine scaffold_465 . biological_region 1205 1208 0.999 - . logic_name=eponine scaffold_465 . biological_region 1231 1240 0.999 - . logic_name=eponine scaffold_465 . biological_region 1250 1251 0.999 + . logic_name=eponine scaffold_465 . biological_region 1255 1255 0.999 - . logic_name=eponine scaffold_465 . biological_region 1286 1293 0.999 + . logic_name=eponine scaffold_465 . repeat_region 3844 3870 . ? . description=trf scaffold_465 . repeat_region 4138 4159 . ? . description=trf scaffold_465 . repeat_region 4138 4159 . ? . description=dust scaffold_465 . biological_region 4837 4838 0.999 + . logic_name=eponine scaffold_465 ensembl protein_coding_gene 942 1424 . + . ID=Phyra86103;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_465000001;logic_name=jgi_phyra1 scaffold_465 ensembl transcript 942 1424 . + . ID=Phyra86103;Parent=Phyra86103;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_465 . CDS 942 1424 . + 0 ID=Phyra86103;Parent=Phyra86103;rank=1 scaffold_465 . exon 942 1424 . + . ID=Phyra86103.1;Parent=Phyra86103;constitutive=1;rank=1 scaffold_465 ensembl protein_coding_gene 3633 4091 . - . ID=Phyra86104;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_465000002;logic_name=jgi_phyra1 scaffold_465 ensembl transcript 3633 4091 . - . ID=Phyra86104;Parent=Phyra86104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_465 . CDS 3633 4091 . - 0 ID=Phyra86104;Parent=Phyra86104;rank=1 scaffold_465 . exon 3633 4091 . - . ID=Phyra86104.1;Parent=Phyra86104;constitutive=1;rank=1 scaffold_465 ensembl protein_coding_gene 9541 11818 . - . ID=Phyra86105;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_465000003;logic_name=jgi_phyra1 scaffold_465 ensembl transcript 9541 11818 . - . ID=Phyra86105;Parent=Phyra86105;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_465 . CDS 9541 10436 . - 0 ID=Phyra86105;Parent=Phyra86105;rank=2 scaffold_465 . exon 9541 10436 . - . ID=Phyra86105.2;Parent=Phyra86105;constitutive=1;ensembl_phase=1;rank=2 scaffold_465 . CDS 10963 11818 . - 0 ID=Phyra86105;Parent=Phyra86105;rank=1 scaffold_465 . exon 10963 11818 . - . ID=Phyra86105.1;Parent=Phyra86105;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_473 1 12008 scaffold_473 . biological_region 174 179 0.999 - . logic_name=eponine scaffold_473 . repeat_region 1051 1066 . ? . description=dust scaffold_473 . biological_region 1204 1207 0.999 + . logic_name=eponine scaffold_473 . biological_region 1245 1246 0.999 + . logic_name=eponine scaffold_473 . repeat_region 1319 1597 . - . description=GypsyPi-1c_I-int scaffold_473 . repeat_region 1850 1863 . ? . description=dust scaffold_473 . repeat_region 1854 4200 . - . description=GypsyPi-1c_I-int scaffold_473 . repeat_region 2494 2845 . ? . description=dust scaffold_473 . biological_region 4725 4729 0.999 - . logic_name=eponine scaffold_473 . biological_region 4762 4765 0.999 + . logic_name=eponine scaffold_473 . biological_region 4828 4831 0.999 - . logic_name=eponine scaffold_473 . biological_region 4879 4882 0.999 - . logic_name=eponine scaffold_473 ensembl protein_coding_gene 1 1302 . + . ID=Phyra86125;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_473000001;logic_name=jgi_phyra1 scaffold_473 ensembl transcript 1 1302 . + . ID=Phyra86125;Parent=Phyra86125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_473 . exon 1 650 . + . ID=Phyra86125.1;Parent=Phyra86125;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_473 . CDS 2 650 . + 0 ID=Phyra86125;Parent=Phyra86125;rank=1 scaffold_473 . CDS 675 872 . + 0 ID=Phyra86125;Parent=Phyra86125;rank=2 scaffold_473 . exon 675 872 . + . ID=Phyra86125.2;Parent=Phyra86125;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_473 . CDS 1223 1302 . + 0 ID=Phyra86125;Parent=Phyra86125;rank=3 scaffold_473 . exon 1223 1302 . + . ID=Phyra86125.3;Parent=Phyra86125;constitutive=1;ensembl_phase=1;rank=3 scaffold_473 ensembl protein_coding_gene 3133 5327 . - . ID=Phyra86126;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_473000002;logic_name=jgi_phyra1 scaffold_473 ensembl transcript 3133 5327 . - . ID=Phyra86126;Parent=Phyra86126;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_473 . CDS 3133 3146 . - 0 ID=Phyra86126;Parent=Phyra86126;rank=4 scaffold_473 . exon 3133 3146 . - . ID=Phyra86126.4;Parent=Phyra86126;constitutive=1;ensembl_phase=1;rank=4 scaffold_473 . CDS 3173 4920 . - 0 ID=Phyra86126;Parent=Phyra86126;rank=3 scaffold_473 . exon 3173 4920 . - . ID=Phyra86126.3;Parent=Phyra86126;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_473 . CDS 4964 5027 . - 0 ID=Phyra86126;Parent=Phyra86126;rank=2 scaffold_473 . exon 4964 5027 . - . ID=Phyra86126.2;Parent=Phyra86126;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_473 . CDS 5141 5327 . - 0 ID=Phyra86126;Parent=Phyra86126;rank=1 scaffold_473 . exon 5141 5327 . - . ID=Phyra86126.1;Parent=Phyra86126;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_462 1 12032 scaffold_462 . repeat_region 1044 1051 . ? . description=dust scaffold_462 . repeat_region 2910 3030 . ? . description=dust scaffold_462 . biological_region 3321 3325 0.999 + . logic_name=eponine scaffold_462 . repeat_region 4400 4498 . + . description=GypsyPi-1c_I-int scaffold_462 . biological_region 4836 4838 0.999 + . logic_name=eponine scaffold_462 . biological_region 4887 4890 0.999 + . logic_name=eponine scaffold_462 . biological_region 4913 4916 0.999 - . logic_name=eponine scaffold_462 . biological_region 4989 4993 0.999 + . logic_name=eponine scaffold_462 . repeat_region 5549 6780 . ? . description=dust scaffold_462 ensembl pseudogene 1359 2111 . - . ID=Phyra49441;biotype=pseudogene;external_name=gwEuk.462.1.1;logic_name=jgi_phyra1 scaffold_462 ensembl pseudogene 1359 2111 . - . ID=Phyra49441;Parent=Phyra49441;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_462 . exon 1359 1718 . - . ID=Phyra49441.2;Parent=Phyra49441;constitutive=1;rank=2 scaffold_462 . exon 1818 2111 . - . ID=Phyra49441.1;Parent=Phyra49441;constitutive=1;rank=1 scaffold_462 ensembl protein_coding_gene 9421 11871 . + . ID=Phyra86097;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_462000001;logic_name=jgi_phyra1 scaffold_462 ensembl transcript 9421 11871 . + . ID=Phyra86097;Parent=Phyra86097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_462 . CDS 9421 11871 . + 0 ID=Phyra86097;Parent=Phyra86097;rank=1 scaffold_462 . exon 9421 11871 . + . ID=Phyra86097.1;Parent=Phyra86097;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_466 1 12035 scaffold_466 . biological_region 582 585 0.999 + . logic_name=eponine scaffold_466 . biological_region 675 675 0.999 - . logic_name=eponine scaffold_466 . biological_region 767 769 0.999 + . logic_name=eponine scaffold_466 . repeat_region 2216 5309 . ? . description=dust scaffold_466 ensembl protein_coding_gene 71 1244 . - . ID=Phyra86106;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_466000001;logic_name=jgi_phyra1 scaffold_466 ensembl transcript 71 1244 . - . ID=Phyra86106;Parent=Phyra86106;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_466 . CDS 71 268 . - 0 ID=Phyra86106;Parent=Phyra86106;rank=3 scaffold_466 . exon 71 268 . - . ID=Phyra86106.3;Parent=Phyra86106;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_466 . CDS 293 310 . - 0 ID=Phyra86106;Parent=Phyra86106;rank=2 scaffold_466 . exon 293 310 . - . ID=Phyra86106.2;Parent=Phyra86106;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_466 . CDS 365 1244 . - 0 ID=Phyra86106;Parent=Phyra86106;rank=1 scaffold_466 . exon 365 1244 . - . ID=Phyra86106.1;Parent=Phyra86106;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_466 . repeat_region 11185 11226 . ? . description=trf scaffold_466 . repeat_region 11187 11231 . ? . description=trf scaffold_466 . repeat_region 11252 11329 . ? . description=trf scaffold_466 . repeat_region 11289 11380 . ? . description=trf scaffold_466 . repeat_region 11301 11435 . ? . description=trf scaffold_466 ensembl protein_coding_gene 7385 10115 . + . ID=Phyra86107;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_466000002;logic_name=jgi_phyra1 scaffold_466 ensembl transcript 7385 10115 . + . ID=Phyra86107;Parent=Phyra86107;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_466 . CDS 7385 8864 . + 0 ID=Phyra86107;Parent=Phyra86107;rank=1 scaffold_466 . exon 7385 8864 . + . ID=Phyra86107.1;Parent=Phyra86107;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_466 . CDS 9277 10115 . + 0 ID=Phyra86107;Parent=Phyra86107;rank=2 scaffold_466 . exon 9277 10115 . + . ID=Phyra86107.2;Parent=Phyra86107;constitutive=1;ensembl_phase=1;rank=2 scaffold_466 ensembl protein_coding_gene 10848 11916 . - . ID=Phyra86108;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_466000003;logic_name=jgi_phyra1 scaffold_466 ensembl transcript 10848 11916 . - . ID=Phyra86108;Parent=Phyra86108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_466 . CDS 10848 10973 . - 0 ID=Phyra86108;Parent=Phyra86108;rank=3 scaffold_466 . exon 10848 10973 . - . ID=Phyra86108.3;Parent=Phyra86108;constitutive=1;rank=3 scaffold_466 . CDS 11033 11690 . - 0 ID=Phyra86108;Parent=Phyra86108;rank=2 scaffold_466 . exon 11033 11690 . - . ID=Phyra86108.2;Parent=Phyra86108;constitutive=1;ensembl_phase=2;rank=2 scaffold_466 . CDS 11858 11916 . - 0 ID=Phyra86108;Parent=Phyra86108;rank=1 scaffold_466 . exon 11858 11916 . - . ID=Phyra86108.1;Parent=Phyra86108;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_459 1 12089 scaffold_459 . biological_region 4685 4686 0.999 - . logic_name=eponine scaffold_459 . repeat_region 5627 8487 . ? . description=dust scaffold_459 ensembl protein_coding_gene 2626 4665 . + . ID=Phyra86091;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_459000001;logic_name=jgi_phyra1 scaffold_459 ensembl transcript 2626 4665 . + . ID=Phyra86091;Parent=Phyra86091;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_459 . CDS 2626 3059 . + 0 ID=Phyra86091;Parent=Phyra86091;rank=1 scaffold_459 . exon 2626 3059 . + . ID=Phyra86091.1;Parent=Phyra86091;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_459 . CDS 3201 4665 . + 0 ID=Phyra86091;Parent=Phyra86091;rank=2 scaffold_459 . exon 3201 4665 . + . ID=Phyra86091.2;Parent=Phyra86091;constitutive=1;ensembl_phase=2;rank=2 scaffold_459 ensembl protein_coding_gene 9835 10728 . + . ID=Phyra72401;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_459000001;logic_name=jgi_phyra1 scaffold_459 ensembl transcript 9835 10728 . + . ID=Phyra72401;Parent=Phyra72401;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_459 . CDS 9835 9972 . + 0 ID=Phyra72401;Parent=Phyra72401;rank=1 scaffold_459 . exon 9835 9972 . + . ID=Phyra72401.1;Parent=Phyra72401;constitutive=1;rank=1 scaffold_459 . CDS 10045 10728 . + 0 ID=Phyra72401;Parent=Phyra72401;rank=2 scaffold_459 . exon 10045 10728 . + . ID=Phyra72401.2;Parent=Phyra72401;constitutive=1;rank=2 scaffold_459 ensembl protein_coding_gene 11572 12048 . + . ID=Phyra86093;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_459000003;logic_name=jgi_phyra1 scaffold_459 ensembl transcript 11572 12048 . + . ID=Phyra86093;Parent=Phyra86093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_459 . CDS 11572 12048 . + 0 ID=Phyra86093;Parent=Phyra86093;rank=1 scaffold_459 . exon 11572 12048 . + . ID=Phyra86093.1;Parent=Phyra86093;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_463 1 12108 scaffold_463 . repeat_region 1583 1632 . ? . description=dust scaffold_463 . repeat_region 3445 3494 . ? . description=dust scaffold_463 . repeat_region 4357 4370 . ? . description=dust scaffold_463 ensembl protein_coding_gene 1 1886 . + . ID=Phyra86098;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_463000001;logic_name=jgi_phyra1 scaffold_463 ensembl transcript 1 1886 . + . ID=Phyra86098;Parent=Phyra86098;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_463 . exon 1 1516 . + . ID=Phyra86098.1;Parent=Phyra86098;constitutive=1;ensembl_phase=-1;rank=1 scaffold_463 . CDS 2 1516 . + 0 ID=Phyra86098;Parent=Phyra86098;rank=1 scaffold_463 . CDS 1776 1886 . + 0 ID=Phyra86098;Parent=Phyra86098;rank=2 scaffold_463 . exon 1776 1886 . + . ID=Phyra86098.2;Parent=Phyra86098;constitutive=1;rank=2 scaffold_463 ensembl protein_coding_gene 4925 5296 . + . ID=Phyra86099;biotype=protein_coding;description=Elicitin-like protein RAL7AElicitin-like protein RAL7B [Source:UniProtKB/TrEMBL%3BAcc:Q2N0B1];external_name=fgenesh1_pg.C_scaffold_463000002;logic_name=jgi_phyra1 scaffold_463 ensembl transcript 4925 5296 . + . ID=Phyra86099;Parent=Phyra86099;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_463 . CDS 4925 5296 . + 0 ID=Phyra86099;Parent=Phyra86099;rank=1 scaffold_463 . exon 4925 5296 . + . ID=Phyra86099.1;Parent=Phyra86099;constitutive=1;rank=1 scaffold_463 ensembl protein_coding_gene 5611 6351 . - . ID=Phyra86100;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_463000003;logic_name=jgi_phyra1 scaffold_463 ensembl transcript 5611 6351 . - . ID=Phyra86100;Parent=Phyra86100;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_463 . CDS 5611 6351 . - 0 ID=Phyra86100;Parent=Phyra86100;rank=1 scaffold_463 . exon 5611 6351 . - . ID=Phyra86100.1;Parent=Phyra86100;constitutive=1;rank=1 scaffold_463 . repeat_region 8595 9611 . + . description=Gypsy-1-I_PI-int scaffold_463 . repeat_region 10304 10792 . + . description=Gypsy-1-I_PI-int scaffold_463 ensembl protein_coding_gene 6764 7606 . + . ID=Phyra86101;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_463000004;logic_name=jgi_phyra1 scaffold_463 ensembl transcript 6764 7606 . + . ID=Phyra86101;Parent=Phyra86101;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_463 . CDS 6764 7606 . + 0 ID=Phyra86101;Parent=Phyra86101;rank=1 scaffold_463 . exon 6764 7606 . + . ID=Phyra86101.1;Parent=Phyra86101;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_471 1 12138 scaffold_471 . repeat_region 1537 1680 . ? . description=trf scaffold_471 . repeat_region 1616 1680 . ? . description=trf scaffold_471 . biological_region 1622 1624 0.999 + . logic_name=eponine scaffold_471 . biological_region 2870 2871 0.999 - . logic_name=eponine scaffold_471 . repeat_region 5773 9840 . ? . description=dust scaffold_471 ensembl protein_coding_gene 1057 4195 . + . ID=Phyra86119;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_471000001;logic_name=jgi_phyra1 scaffold_471 ensembl transcript 1057 4195 . + . ID=Phyra86119;Parent=Phyra86119;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_471 . CDS 1057 1202 . + 0 ID=Phyra86119;Parent=Phyra86119;rank=1 scaffold_471 . exon 1057 1202 . + . ID=Phyra86119.1;Parent=Phyra86119;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_471 . CDS 1271 2932 . + 0 ID=Phyra86119;Parent=Phyra86119;rank=2 scaffold_471 . exon 1271 2932 . + . ID=Phyra86119.2;Parent=Phyra86119;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_471 . CDS 3019 4195 . + 0 ID=Phyra86119;Parent=Phyra86119;rank=3 scaffold_471 . exon 3019 4195 . + . ID=Phyra86119.3;Parent=Phyra86119;constitutive=1;ensembl_phase=2;rank=3 scaffold_471 ensembl protein_coding_gene 4499 5257 . - . ID=Phyra86120;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_471000002;logic_name=jgi_phyra1 scaffold_471 ensembl transcript 4499 5257 . - . ID=Phyra86120;Parent=Phyra86120;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_471 . CDS 4499 5257 . - 0 ID=Phyra86120;Parent=Phyra86120;rank=1 scaffold_471 . exon 4499 5257 . - . ID=Phyra86120.1;Parent=Phyra86120;constitutive=1;rank=1 scaffold_471 ensembl snoRNA_gene 11707 11931 . + . ID=EPrPRAG00000000147;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_471 ensembl snoRNA 11707 11931 . + . ID=EPrPRAT00000000147;Parent=EPrPRAG00000000147;biotype=snoRNA;logic_name=ncrna_eg scaffold_471 . exon 11707 11931 . + . ID=EPrPRAE00000000147;Parent=EPrPRAT00000000147;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_457 1 12142 scaffold_457 . repeat_region 575 594 . ? . description=trf scaffold_457 . repeat_region 1446 1809 . ? . description=dust scaffold_457 . biological_region 2324 2325 0.999 + . logic_name=eponine scaffold_457 . biological_region 2688 2691 0.999 + . logic_name=eponine scaffold_457 . biological_region 3778 3778 0.999 - . logic_name=eponine scaffold_457 . biological_region 3954 3955 0.999 - . logic_name=eponine scaffold_457 . biological_region 4996 4999 0.999 - . logic_name=eponine scaffold_457 . repeat_region 5406 10835 . ? . description=dust scaffold_457 ensembl protein_coding_gene 3976 4401 . + . ID=Phyra49328;biotype=protein_coding;external_name=gwEuk.457.3.1;logic_name=jgi_phyra1 scaffold_457 ensembl transcript 3976 4401 . + . ID=Phyra49328;Parent=Phyra49328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_457 . CDS 3976 4401 . + 0 ID=Phyra49328;Parent=Phyra49328;rank=1 scaffold_457 . exon 3976 4401 . + . ID=Phyra49328.1;Parent=Phyra49328;constitutive=1;rank=1 scaffold_457 ensembl protein_coding_gene 4714 5070 . + . ID=Phyra49330;biotype=protein_coding;external_name=gwEuk.457.5.1;logic_name=jgi_phyra1 scaffold_457 ensembl transcript 4714 5070 . + . ID=Phyra49330;Parent=Phyra49330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_457 . CDS 4714 5070 . + 0 ID=Phyra49330;Parent=Phyra49330;rank=1 scaffold_457 . exon 4714 5070 . + . ID=Phyra49330.1;Parent=Phyra49330;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_455 1 12145 scaffold_455 . repeat_region 1158 6789 . ? . description=dust scaffold_455 . biological_region 7180 7181 0.999 + . logic_name=eponine scaffold_455 . repeat_region 8417 8475 . ? . description=trf scaffold_455 . biological_region 8644 8649 0.999 + . logic_name=eponine scaffold_455 . biological_region 10956 10957 0.999 - . logic_name=eponine scaffold_455 ensembl protein_coding_gene 7048 7620 . + . ID=Phyra86087;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_455000001;logic_name=jgi_phyra1 scaffold_455 ensembl transcript 7048 7620 . + . ID=Phyra86087;Parent=Phyra86087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_455 . CDS 7048 7620 . + 0 ID=Phyra86087;Parent=Phyra86087;rank=1 scaffold_455 . exon 7048 7620 . + . ID=Phyra86087.1;Parent=Phyra86087;constitutive=1;rank=1 scaffold_455 ensembl protein_coding_gene 9203 9901 . + . ID=Phyra86088;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_455000002;logic_name=jgi_phyra1 scaffold_455 ensembl transcript 9203 9901 . + . ID=Phyra86088;Parent=Phyra86088;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_455 . CDS 9203 9901 . + 0 ID=Phyra86088;Parent=Phyra86088;rank=1 scaffold_455 . exon 9203 9901 . + . ID=Phyra86088.1;Parent=Phyra86088;constitutive=1;rank=1 scaffold_455 ensembl protein_coding_gene 10618 11208 . + . ID=Phyra86089;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_455000003;logic_name=jgi_phyra1 scaffold_455 ensembl transcript 10618 11208 . + . ID=Phyra86089;Parent=Phyra86089;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_455 . CDS 10618 11208 . + 0 ID=Phyra86089;Parent=Phyra86089;rank=1 scaffold_455 . exon 10618 11208 . + . ID=Phyra86089.1;Parent=Phyra86089;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_469 1 12151 scaffold_469 . repeat_region 1439 1676 . ? . description=dust scaffold_469 . repeat_region 1856 1878 . ? . description=trf scaffold_469 . biological_region 2623 2624 0.999 + . logic_name=eponine scaffold_469 . repeat_region 3535 3542 . ? . description=dust scaffold_469 . repeat_region 4215 5411 . ? . description=dust scaffold_469 . repeat_region 6003 6010 . ? . description=dust scaffold_469 . repeat_region 7818 7893 . + . description=GypsyPi-1c_LTR scaffold_469 . repeat_region 7894 9505 . + . description=GypsyPi-1c_I-int scaffold_469 . repeat_region 11686 11963 . - . description=GypsyPi-1c_I-int scaffold_469 ensembl protein_coding_gene 7981 8757 . + . ID=Phyra86115;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_469000001;logic_name=jgi_phyra1 scaffold_469 ensembl transcript 7981 8757 . + . ID=Phyra86115;Parent=Phyra86115;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_469 . CDS 7981 8757 . + 0 ID=Phyra86115;Parent=Phyra86115;rank=1 scaffold_469 . exon 7981 8757 . + . ID=Phyra86115.1;Parent=Phyra86115;constitutive=1;rank=1 scaffold_469 ensembl protein_coding_gene 9531 10124 . - . ID=Phyra86116;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_469000002;logic_name=jgi_phyra1 scaffold_469 ensembl transcript 9531 10124 . - . ID=Phyra86116;Parent=Phyra86116;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_469 . CDS 9531 10124 . - 0 ID=Phyra86116;Parent=Phyra86116;rank=1 scaffold_469 . exon 9531 10124 . - . ID=Phyra86116.1;Parent=Phyra86116;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_454 1 12152 scaffold_454 . repeat_region 1124 1160 . ? . description=trf scaffold_454 . repeat_region 4556 10001 . ? . description=dust scaffold_454 ensembl protein_coding_gene 3251 4411 . - . ID=Phyra86086;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_454000001;logic_name=jgi_phyra1 scaffold_454 ensembl transcript 3251 4411 . - . ID=Phyra86086;Parent=Phyra86086;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_454 . CDS 3251 4411 . - 0 ID=Phyra86086;Parent=Phyra86086;rank=1 scaffold_454 . exon 3251 4411 . - . ID=Phyra86086.1;Parent=Phyra86086;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_460 1 12156 scaffold_460 . biological_region 656 660 0.999 + . logic_name=eponine scaffold_460 . biological_region 707 712 0.999 + . logic_name=eponine scaffold_460 . biological_region 736 737 0.999 - . logic_name=eponine scaffold_460 . biological_region 773 775 0.999 - . logic_name=eponine scaffold_460 . biological_region 810 814 0.999 + . logic_name=eponine scaffold_460 . repeat_region 1092 4508 . ? . description=dust scaffold_460 . biological_region 4567 4570 0.999 + . logic_name=eponine scaffold_460 . biological_region 4752 4753 0.999 + . logic_name=eponine scaffold_460 ensembl protein_coding_gene 4560 5229 . - . ID=Phyra86094;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_460000001;logic_name=jgi_phyra1 scaffold_460 ensembl transcript 4560 5229 . - . ID=Phyra86094;Parent=Phyra86094;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_460 . CDS 4560 4581 . - 0 ID=Phyra86094;Parent=Phyra86094;rank=2 scaffold_460 . exon 4560 4581 . - . ID=Phyra86094.2;Parent=Phyra86094;constitutive=1;ensembl_phase=2;rank=2 scaffold_460 . CDS 4631 5229 . - 0 ID=Phyra86094;Parent=Phyra86094;rank=1 scaffold_460 . exon 4631 5229 . - . ID=Phyra86094.1;Parent=Phyra86094;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_460 . repeat_region 6951 7109 . + . description=GypsyPi-1c_I-int scaffold_460 . repeat_region 7898 8038 . + . description=GypsyPi-1c_LTR ##gff-version 3 ##sequence-region scaffold_443 1 12171 scaffold_443 . biological_region 686 689 0.999 + . logic_name=eponine scaffold_443 . biological_region 871 872 0.999 + . logic_name=eponine scaffold_443 . repeat_region 3656 3673 . ? . description=dust scaffold_443 . biological_region 5710 5714 0.999 + . logic_name=eponine scaffold_443 . biological_region 5761 5765 0.999 - . logic_name=eponine scaffold_443 ensembl protein_coding_gene 175 1348 . - . ID=Phyra86065;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_443000001;logic_name=jgi_phyra1 scaffold_443 ensembl transcript 175 1348 . - . ID=Phyra86065;Parent=Phyra86065;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_443 . CDS 175 372 . - 0 ID=Phyra86065;Parent=Phyra86065;rank=2 scaffold_443 . exon 175 372 . - . ID=Phyra86065.2;Parent=Phyra86065;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_443 . CDS 397 1348 . - 0 ID=Phyra86065;Parent=Phyra86065;rank=1 scaffold_443 . exon 397 1348 . - . ID=Phyra86065.1;Parent=Phyra86065;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_443 . repeat_region 7109 7150 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_458 1 12174 scaffold_458 . repeat_region 1409 5837 . ? . description=dust scaffold_458 . repeat_region 6312 6338 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_452 1 12209 scaffold_452 . biological_region 1022 1023 0.999 + . logic_name=eponine scaffold_452 . repeat_region 1122 1155 . ? . description=trf scaffold_452 . repeat_region 5462 5471 . ? . description=dust scaffold_452 ensembl protein_coding_gene 227 1160 . - . ID=Phyra86082;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_452000001;logic_name=jgi_phyra1 scaffold_452 ensembl transcript 227 1160 . - . ID=Phyra86082;Parent=Phyra86082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_452 . CDS 227 314 . - 0 ID=Phyra86082;Parent=Phyra86082;rank=3 scaffold_452 . exon 227 314 . - . ID=Phyra86082.3;Parent=Phyra86082;constitutive=1;ensembl_phase=2;rank=3 scaffold_452 . CDS 381 672 . - 0 ID=Phyra86082;Parent=Phyra86082;rank=2 scaffold_452 . exon 381 672 . - . ID=Phyra86082.2;Parent=Phyra86082;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_452 . CDS 842 1160 . - 0 ID=Phyra86082;Parent=Phyra86082;rank=1 scaffold_452 . exon 842 1160 . - . ID=Phyra86082.1;Parent=Phyra86082;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_453 1 12242 scaffold_453 . repeat_region 1886 3425 . ? . description=dust scaffold_453 . repeat_region 3448 3726 . + . description=GypsyPi-1c_I-int scaffold_453 . biological_region 3800 3803 0.999 - . logic_name=eponine scaffold_453 . biological_region 3840 3844 0.999 - . logic_name=eponine scaffold_453 . repeat_region 3979 3993 . ? . description=dust scaffold_453 . repeat_region 4543 6072 . ? . description=dust scaffold_453 ensembl protein_coding_gene 71 916 . + . ID=Phyra86083;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_453000001;logic_name=jgi_phyra1 scaffold_453 ensembl transcript 71 916 . + . ID=Phyra86083;Parent=Phyra86083;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_453 . CDS 71 916 . + 0 ID=Phyra86083;Parent=Phyra86083;rank=1 scaffold_453 . exon 71 916 . + . ID=Phyra86083.1;Parent=Phyra86083;constitutive=1;rank=1 scaffold_453 ensembl protein_coding_gene 3743 4444 . - . ID=Phyra86084;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_453000002;logic_name=jgi_phyra1 scaffold_453 ensembl transcript 3743 4444 . - . ID=Phyra86084;Parent=Phyra86084;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_453 . CDS 3743 3952 . - 0 ID=Phyra86084;Parent=Phyra86084;rank=4 scaffold_453 . exon 3743 3952 . - . ID=Phyra86084.4;Parent=Phyra86084;constitutive=1;rank=4 scaffold_453 . CDS 4008 4135 . - 0 ID=Phyra86084;Parent=Phyra86084;rank=3 scaffold_453 . exon 4008 4135 . - . ID=Phyra86084.3;Parent=Phyra86084;constitutive=1;ensembl_phase=1;rank=3 scaffold_453 . CDS 4172 4307 . - 0 ID=Phyra86084;Parent=Phyra86084;rank=2 scaffold_453 . exon 4172 4307 . - . ID=Phyra86084.2;Parent=Phyra86084;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_453 . CDS 4394 4444 . - 0 ID=Phyra86084;Parent=Phyra86084;rank=1 scaffold_453 . exon 4394 4444 . - . ID=Phyra86084.1;Parent=Phyra86084;constitutive=1;rank=1 scaffold_453 . repeat_region 9905 10730 . ? . description=trf scaffold_453 ensembl protein_coding_gene 7647 10650 . + . ID=Phyra86085;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_453000003;logic_name=jgi_phyra1 scaffold_453 ensembl transcript 7647 10650 . + . ID=Phyra86085;Parent=Phyra86085;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_453 . CDS 7647 7794 . + 0 ID=Phyra86085;Parent=Phyra86085;rank=1 scaffold_453 . exon 7647 7794 . + . ID=Phyra86085.1;Parent=Phyra86085;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_453 . CDS 7821 7887 . + 0 ID=Phyra86085;Parent=Phyra86085;rank=2 scaffold_453 . exon 7821 7887 . + . ID=Phyra86085.2;Parent=Phyra86085;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_453 . CDS 8468 8799 . + 0 ID=Phyra86085;Parent=Phyra86085;rank=3 scaffold_453 . exon 8468 8799 . + . ID=Phyra86085.3;Parent=Phyra86085;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_453 . CDS 10007 10650 . + 0 ID=Phyra86085;Parent=Phyra86085;rank=4 scaffold_453 . exon 10007 10650 . + . ID=Phyra86085.4;Parent=Phyra86085;constitutive=1;ensembl_phase=1;rank=4 ##gff-version 3 ##sequence-region scaffold_461 1 12246 scaffold_461 . repeat_region 1183 5321 . ? . description=dust scaffold_461 . biological_region 6146 6151 0.999 - . logic_name=eponine scaffold_461 . biological_region 6824 6827 0.999 + . logic_name=eponine scaffold_461 . biological_region 7334 7340 0.999 - . logic_name=eponine scaffold_461 . biological_region 7375 7377 0.999 + . logic_name=eponine scaffold_461 . biological_region 9338 9340 0.999 - . logic_name=eponine scaffold_461 . biological_region 9375 9381 0.999 + . logic_name=eponine scaffold_461 . repeat_region 11392 11510 . ? . description=trf scaffold_461 . repeat_region 11465 11549 . ? . description=trf scaffold_461 . repeat_region 11979 12003 . ? . description=trf scaffold_461 ensembl protein_coding_gene 6292 7485 . - . ID=Phyra72402;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_461000001;logic_name=jgi_phyra1 scaffold_461 ensembl transcript 6292 7485 . - . ID=Phyra72402;Parent=Phyra72402;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_461 . CDS 6292 7485 . - 0 ID=Phyra72402;Parent=Phyra72402;rank=1 scaffold_461 . exon 6292 7485 . - . ID=Phyra72402.1;Parent=Phyra72402;constitutive=1;rank=1 scaffold_461 ensembl protein_coding_gene 9130 11972 . - . ID=Phyra86096;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_461000002;logic_name=jgi_phyra1 scaffold_461 ensembl transcript 9130 11972 . - . ID=Phyra86096;Parent=Phyra86096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_461 . CDS 9130 9610 . - 0 ID=Phyra86096;Parent=Phyra86096;rank=2 scaffold_461 . exon 9130 9610 . - . ID=Phyra86096.2;Parent=Phyra86096;constitutive=1;ensembl_phase=2;rank=2 scaffold_461 . CDS 11230 11972 . - 0 ID=Phyra86096;Parent=Phyra86096;rank=1 scaffold_461 . exon 11230 11972 . - . ID=Phyra86096.1;Parent=Phyra86096;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_451 1 12299 scaffold_451 . biological_region 8 8 0.999 + . logic_name=eponine scaffold_451 ensembl pseudogene 1754 2004 . - . ID=Phyra49319;biotype=pseudogene;external_name=gwEuk.451.1.1;logic_name=jgi_phyra1 scaffold_451 ensembl pseudogene 1754 2004 . - . ID=Phyra49319;Parent=Phyra49319;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_451 . exon 1754 2004 . - . ID=Phyra49319.1;Parent=Phyra49319;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_451 ensembl protein_coding_gene 7566 8770 . + . ID=Phyra86081;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_451000001;logic_name=jgi_phyra1 scaffold_451 ensembl transcript 7566 8770 . + . ID=Phyra86081;Parent=Phyra86081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_451 . CDS 7566 7953 . + 0 ID=Phyra86081;Parent=Phyra86081;rank=1 scaffold_451 . exon 7566 7953 . + . ID=Phyra86081.1;Parent=Phyra86081;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_451 . CDS 8016 8770 . + 0 ID=Phyra86081;Parent=Phyra86081;rank=2 scaffold_451 . exon 8016 8770 . + . ID=Phyra86081.2;Parent=Phyra86081;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_450 1 12324 scaffold_450 . repeat_region 1690 2666 . ? . description=dust scaffold_450 . repeat_region 3715 3722 . ? . description=dust scaffold_450 . repeat_region 4278 4291 . ? . description=dust scaffold_450 . repeat_region 4866 8755 . ? . description=dust scaffold_450 ensembl protein_coding_gene 83 735 . - . ID=Phyra86080;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_450000001;logic_name=jgi_phyra1 scaffold_450 ensembl transcript 83 735 . - . ID=Phyra86080;Parent=Phyra86080;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_450 . CDS 83 735 . - 0 ID=Phyra86080;Parent=Phyra86080;rank=1 scaffold_450 . exon 83 735 . - . ID=Phyra86080.1;Parent=Phyra86080;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_450 . repeat_region 9699 9774 . ? . description=trf scaffold_450 . biological_region 10363 10369 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_449 1 12355 scaffold_449 . repeat_region 3325 3357 . ? . description=dust scaffold_449 . repeat_region 3330 3357 . ? . description=trf scaffold_449 . repeat_region 4917 4933 . ? . description=dust scaffold_449 ensembl protein_coding_gene 40 1191 . + . ID=Phyra86076;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_449000001;logic_name=jgi_phyra1 scaffold_449 ensembl transcript 40 1191 . + . ID=Phyra86076;Parent=Phyra86076;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_449 . CDS 40 1191 . + 0 ID=Phyra86076;Parent=Phyra86076;rank=1 scaffold_449 . exon 40 1191 . + . ID=Phyra86076.1;Parent=Phyra86076;constitutive=1;rank=1 scaffold_449 ensembl protein_coding_gene 3366 4319 . + . ID=Phyra86077;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_449000002;logic_name=jgi_phyra1 scaffold_449 ensembl transcript 3366 4319 . + . ID=Phyra86077;Parent=Phyra86077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_449 . CDS 3366 4319 . + 0 ID=Phyra86077;Parent=Phyra86077;rank=1 scaffold_449 . exon 3366 4319 . + . ID=Phyra86077.1;Parent=Phyra86077;constitutive=1;rank=1 scaffold_449 ensembl protein_coding_gene 4978 5931 . - . ID=Phyra86078;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_449000003;logic_name=jgi_phyra1 scaffold_449 ensembl transcript 4978 5931 . - . ID=Phyra86078;Parent=Phyra86078;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_449 . CDS 4978 5931 . - 0 ID=Phyra86078;Parent=Phyra86078;rank=1 scaffold_449 . exon 4978 5931 . - . ID=Phyra86078.1;Parent=Phyra86078;constitutive=1;rank=1 scaffold_449 ensembl protein_coding_gene 8374 9834 . - . ID=Phyra86079;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_449000004;logic_name=jgi_phyra1 scaffold_449 ensembl transcript 8374 9834 . - . ID=Phyra86079;Parent=Phyra86079;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_449 . CDS 8374 9834 . - 0 ID=Phyra86079;Parent=Phyra86079;rank=1 scaffold_449 . exon 8374 9834 . - . ID=Phyra86079.1;Parent=Phyra86079;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_448 1 12392 scaffold_448 . biological_region 315 316 0.999 + . logic_name=eponine scaffold_448 . repeat_region 1259 1286 . ? . description=trf scaffold_448 . biological_region 1347 1352 0.999 - . logic_name=eponine scaffold_448 . biological_region 4213 4215 0.999 - . logic_name=eponine scaffold_448 ensembl protein_coding_gene 1856 2275 . - . ID=Phyra49215;biotype=protein_coding;external_name=gwEuk.448.1.1;logic_name=jgi_phyra1 scaffold_448 ensembl transcript 1856 2275 . - . ID=Phyra49215;Parent=Phyra49215;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_448 . CDS 1856 2275 . - 0 ID=Phyra49215;Parent=Phyra49215;rank=1 scaffold_448 . exon 1856 2275 . - . ID=Phyra49215.1;Parent=Phyra49215;constitutive=1;rank=1 scaffold_448 ensembl protein_coding_gene 1150 1482 . + . ID=Phyra86073;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_448000001;logic_name=jgi_phyra1 scaffold_448 ensembl transcript 1150 1482 . + . ID=Phyra86073;Parent=Phyra86073;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_448 . CDS 1150 1482 . + 0 ID=Phyra86073;Parent=Phyra86073;rank=1 scaffold_448 . exon 1150 1482 . + . ID=Phyra86073.1;Parent=Phyra86073;constitutive=1;rank=1 scaffold_448 ensembl protein_coding_gene 2444 3421 . - . ID=Phyra86075;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_448000003;logic_name=jgi_phyra1 scaffold_448 ensembl transcript 2444 3421 . - . ID=Phyra86075;Parent=Phyra86075;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_448 . CDS 2444 3421 . - 0 ID=Phyra86075;Parent=Phyra86075;rank=1 scaffold_448 . exon 2444 3421 . - . ID=Phyra86075.1;Parent=Phyra86075;constitutive=1;rank=1 scaffold_448 . repeat_region 6444 6942 . ? . description=dust scaffold_448 . repeat_region 7045 7056 . ? . description=dust scaffold_448 . repeat_region 7157 7169 . ? . description=dust scaffold_448 . repeat_region 10556 10566 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_456 1 12430 scaffold_456 . repeat_region 1203 1255 . ? . description=trf scaffold_456 . repeat_region 1203 1259 . ? . description=trf scaffold_456 . repeat_region 1289 6760 . ? . description=dust scaffold_456 ensembl protein_coding_gene 57 509 . - . ID=Phyra86090;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_456000001;logic_name=jgi_phyra1 scaffold_456 ensembl transcript 57 509 . - . ID=Phyra86090;Parent=Phyra86090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_456 . CDS 57 509 . - 0 ID=Phyra86090;Parent=Phyra86090;rank=1 scaffold_456 . exon 57 509 . - . ID=Phyra86090.1;Parent=Phyra86090;constitutive=1;rank=1 scaffold_456 . biological_region 9324 9329 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_446 1 12452 scaffold_446 . biological_region 893 898 0.999 - . logic_name=eponine scaffold_446 . repeat_region 2206 2232 . ? . description=trf scaffold_446 . repeat_region 2286 2293 . ? . description=dust scaffold_446 . biological_region 3908 3913 0.999 + . logic_name=eponine scaffold_446 . biological_region 3950 3953 0.999 + . logic_name=eponine scaffold_446 . biological_region 4063 4065 0.999 + . logic_name=eponine scaffold_446 . biological_region 4088 4102 0.999 - . logic_name=eponine scaffold_446 . biological_region 4105 4110 0.999 + . logic_name=eponine scaffold_446 . biological_region 4125 4132 0.999 + . logic_name=eponine scaffold_446 . biological_region 4127 4135 0.999 - . logic_name=eponine scaffold_446 . biological_region 4168 4173 0.999 - . logic_name=eponine scaffold_446 ensembl protein_coding_gene 19 2034 . + . ID=Phyra86068;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_446000001;logic_name=jgi_phyra1 scaffold_446 ensembl transcript 19 2034 . + . ID=Phyra86068;Parent=Phyra86068;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_446 . CDS 19 2034 . + 0 ID=Phyra86068;Parent=Phyra86068;rank=1 scaffold_446 . exon 19 2034 . + . ID=Phyra86068.1;Parent=Phyra86068;constitutive=1;rank=1 scaffold_446 ensembl protein_coding_gene 2297 4214 . - . ID=Phyra86069;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_446000002;logic_name=jgi_phyra1 scaffold_446 ensembl transcript 2297 4214 . - . ID=Phyra86069;Parent=Phyra86069;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_446 . CDS 2297 2428 . - 0 ID=Phyra86069;Parent=Phyra86069;rank=3 scaffold_446 . exon 2297 2428 . - . ID=Phyra86069.3;Parent=Phyra86069;constitutive=1;rank=3 scaffold_446 . CDS 2504 3877 . - 0 ID=Phyra86069;Parent=Phyra86069;rank=2 scaffold_446 . exon 2504 3877 . - . ID=Phyra86069.2;Parent=Phyra86069;constitutive=1;rank=2 scaffold_446 . CDS 3939 4214 . - 0 ID=Phyra86069;Parent=Phyra86069;rank=1 scaffold_446 . exon 3939 4214 . - . ID=Phyra86069.1;Parent=Phyra86069;constitutive=1;rank=1 scaffold_446 ensembl protein_coding_gene 7185 10115 . - . ID=Phyra86070;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_446000003;logic_name=jgi_phyra1 scaffold_446 ensembl transcript 7185 10115 . - . ID=Phyra86070;Parent=Phyra86070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_446 . CDS 7185 8348 . - 0 ID=Phyra86070;Parent=Phyra86070;rank=7 scaffold_446 . exon 7185 8348 . - . ID=Phyra86070.7;Parent=Phyra86070;constitutive=1;rank=7 scaffold_446 . CDS 8429 8453 . - 0 ID=Phyra86070;Parent=Phyra86070;rank=6 scaffold_446 . exon 8429 8453 . - . ID=Phyra86070.6;Parent=Phyra86070;constitutive=1;ensembl_phase=2;rank=6 scaffold_446 . CDS 8786 9360 . - 0 ID=Phyra86070;Parent=Phyra86070;rank=5 scaffold_446 . exon 8786 9360 . - . ID=Phyra86070.5;Parent=Phyra86070;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_446 . CDS 9445 9527 . - 0 ID=Phyra86070;Parent=Phyra86070;rank=4 scaffold_446 . exon 9445 9527 . - . ID=Phyra86070.4;Parent=Phyra86070;constitutive=1;ensembl_phase=1;rank=4 scaffold_446 . CDS 9591 9764 . - 0 ID=Phyra86070;Parent=Phyra86070;rank=3 scaffold_446 . exon 9591 9764 . - . ID=Phyra86070.3;Parent=Phyra86070;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_446 . CDS 9827 9927 . - 0 ID=Phyra86070;Parent=Phyra86070;rank=2 scaffold_446 . exon 9827 9927 . - . ID=Phyra86070.2;Parent=Phyra86070;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_446 . CDS 10012 10115 . - 0 ID=Phyra86070;Parent=Phyra86070;rank=1 scaffold_446 . exon 10012 10115 . - . ID=Phyra86070.1;Parent=Phyra86070;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_446 ensembl protein_coding_gene 10228 11920 . + . ID=Phyra86071;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_446000004;logic_name=jgi_phyra1 scaffold_446 ensembl transcript 10228 11920 . + . ID=Phyra86071;Parent=Phyra86071;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_446 . CDS 10228 11837 . + 0 ID=Phyra86071;Parent=Phyra86071;rank=1 scaffold_446 . exon 10228 11837 . + . ID=Phyra86071.1;Parent=Phyra86071;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_446 . CDS 11899 11920 . + 0 ID=Phyra86071;Parent=Phyra86071;rank=2 scaffold_446 . exon 11899 11920 . + . ID=Phyra86071.2;Parent=Phyra86071;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_444 1 12466 scaffold_444 . repeat_region 7 1459 . - . description=GypsyPi-1c_I-int scaffold_444 . repeat_region 1460 2380 . ? . description=dust scaffold_444 . repeat_region 3233 3696 . - . description=GypsyPi-1c_I-int scaffold_444 . biological_region 3533 3535 0.999 - . logic_name=eponine scaffold_444 . repeat_region 3738 9715 . ? . description=dust scaffold_444 ensembl protein_coding_gene 9 1304 . - . ID=Phyra86066;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_444000001;logic_name=jgi_phyra1 scaffold_444 ensembl transcript 9 1304 . - . ID=Phyra86066;Parent=Phyra86066;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_444 . CDS 9 169 . - 0 ID=Phyra86066;Parent=Phyra86066;rank=2 scaffold_444 . exon 9 169 . - . ID=Phyra86066.2;Parent=Phyra86066;constitutive=1;ensembl_phase=1;rank=2 scaffold_444 . CDS 239 1304 . - 0 ID=Phyra86066;Parent=Phyra86066;rank=1 scaffold_444 . exon 239 1304 . - . ID=Phyra86066.1;Parent=Phyra86066;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_444 ensembl protein_coding_gene 10395 10625 . + . ID=Phyra49208;biotype=protein_coding;external_name=gwEuk.444.2.1;logic_name=jgi_phyra1 scaffold_444 ensembl transcript 10395 10625 . + . ID=Phyra49208;Parent=Phyra49208;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_444 . CDS 10395 10625 . + 0 ID=Phyra49208;Parent=Phyra49208;rank=1 scaffold_444 . exon 10395 10625 . + . ID=Phyra49208.1;Parent=Phyra49208;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_442 1 12534 scaffold_442 . repeat_region 4361 6990 . ? . description=dust scaffold_442 ensembl protein_coding_gene 60 1548 . + . ID=Phyra86062;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_442000001;logic_name=jgi_phyra1 scaffold_442 ensembl transcript 60 1548 . + . ID=Phyra86062;Parent=Phyra86062;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_442 . exon 60 652 . + . ID=Phyra86062.1;Parent=Phyra86062;constitutive=1;ensembl_phase=-1;rank=1 scaffold_442 . CDS 62 652 . + 0 ID=Phyra86062;Parent=Phyra86062;rank=1 scaffold_442 . CDS 879 923 . + 0 ID=Phyra86062;Parent=Phyra86062;rank=2 scaffold_442 . exon 879 923 . + . ID=Phyra86062.2;Parent=Phyra86062;constitutive=1;rank=2 scaffold_442 . CDS 988 1054 . + 0 ID=Phyra86062;Parent=Phyra86062;rank=3 scaffold_442 . exon 988 1054 . + . ID=Phyra86062.3;Parent=Phyra86062;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_442 . CDS 1115 1548 . + 0 ID=Phyra86062;Parent=Phyra86062;rank=4 scaffold_442 . exon 1115 1548 . + . ID=Phyra86062.4;Parent=Phyra86062;constitutive=1;ensembl_phase=1;rank=4 scaffold_442 ensembl protein_coding_gene 2113 4245 . - . ID=Phyra86063;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_442000002;logic_name=jgi_phyra1 scaffold_442 ensembl transcript 2113 4245 . - . ID=Phyra86063;Parent=Phyra86063;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_442 . CDS 2113 4245 . - 0 ID=Phyra86063;Parent=Phyra86063;rank=1 scaffold_442 . exon 2113 4245 . - . ID=Phyra86063.1;Parent=Phyra86063;constitutive=1;rank=1 scaffold_442 ensembl protein_coding_gene 7748 11563 . - . ID=Phyra86064;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_442000003;logic_name=jgi_phyra1 scaffold_442 ensembl transcript 7748 11563 . - . ID=Phyra86064;Parent=Phyra86064;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_442 . CDS 7748 9791 . - 0 ID=Phyra86064;Parent=Phyra86064;rank=5 scaffold_442 . exon 7748 9791 . - . ID=Phyra86064.5;Parent=Phyra86064;constitutive=1;ensembl_phase=2;rank=5 scaffold_442 . CDS 9994 9998 . - 0 ID=Phyra86064;Parent=Phyra86064;rank=4 scaffold_442 . exon 9994 9998 . - . ID=Phyra86064.4;Parent=Phyra86064;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_442 . CDS 10532 10930 . - 0 ID=Phyra86064;Parent=Phyra86064;rank=3 scaffold_442 . exon 10532 10930 . - . ID=Phyra86064.3;Parent=Phyra86064;constitutive=1;rank=3 scaffold_442 . CDS 11003 11146 . - 0 ID=Phyra86064;Parent=Phyra86064;rank=2 scaffold_442 . exon 11003 11146 . - . ID=Phyra86064.2;Parent=Phyra86064;constitutive=1;rank=2 scaffold_442 . CDS 11306 11563 . - 0 ID=Phyra86064;Parent=Phyra86064;rank=1 scaffold_442 . exon 11306 11563 . - . ID=Phyra86064.1;Parent=Phyra86064;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_447 1 12550 scaffold_447 . biological_region 593 595 0.999 + . logic_name=eponine scaffold_447 . biological_region 1024 1025 0.999 + . logic_name=eponine scaffold_447 . biological_region 1653 1654 0.999 - . logic_name=eponine scaffold_447 . biological_region 1895 1900 0.999 + . logic_name=eponine scaffold_447 . repeat_region 3860 6985 . ? . description=dust scaffold_447 ensembl protein_coding_gene 893 3634 . - . ID=Phyra86072;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_447000001;logic_name=jgi_phyra1 scaffold_447 ensembl transcript 893 3634 . - . ID=Phyra86072;Parent=Phyra86072;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_447 . CDS 893 3634 . - 0 ID=Phyra86072;Parent=Phyra86072;rank=1 scaffold_447 . exon 893 3634 . - . ID=Phyra86072.1;Parent=Phyra86072;constitutive=1;rank=1 scaffold_447 . repeat_region 9433 9943 . + . description=GypsyPi-1c_I-int scaffold_447 . repeat_region 10237 10515 . + . description=GypsyPi-1c_I-int scaffold_447 ensembl protein_coding_gene 9618 9863 . + . ID=Phyra49214;biotype=protein_coding;external_name=gwEuk.447.1.1;logic_name=jgi_phyra1 scaffold_447 ensembl transcript 9618 9863 . + . ID=Phyra49214;Parent=Phyra49214;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_447 . CDS 9618 9863 . + 0 ID=Phyra49214;Parent=Phyra49214;rank=1 scaffold_447 . exon 9618 9863 . + . ID=Phyra49214.1;Parent=Phyra49214;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_445 1 12617 scaffold_445 . biological_region 224 228 0.999 - . logic_name=eponine scaffold_445 . repeat_region 1457 4424 . ? . description=dust scaffold_445 . repeat_region 4594 4623 . ? . description=trf scaffold_445 . repeat_region 5543 6823 . ? . description=dust scaffold_445 . repeat_region 6824 8846 . - . description=Gypsy-1-I_PI-int scaffold_445 . repeat_region 8902 9692 . - . description=Gypsy-1-I_PI-int scaffold_445 . repeat_region 11203 11305 . - . description=Gypsy-1-I_PI-int scaffold_445 ensembl protein_coding_gene 6946 7311 . - . ID=Phyra49209;biotype=protein_coding;external_name=gwEuk.445.1.1;logic_name=jgi_phyra1 scaffold_445 ensembl transcript 6946 7311 . - . ID=Phyra49209;Parent=Phyra49209;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_445 . CDS 6946 7311 . - 0 ID=Phyra49209;Parent=Phyra49209;rank=1 scaffold_445 . exon 6946 7311 . - . ID=Phyra49209.1;Parent=Phyra49209;constitutive=1;rank=1 scaffold_445 ensembl protein_coding_gene 8529 8846 . - . ID=Phyra49211;biotype=protein_coding;external_name=gwEuk.445.3.1;logic_name=jgi_phyra1 scaffold_445 ensembl transcript 8529 8846 . - . ID=Phyra49211;Parent=Phyra49211;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_445 . CDS 8529 8846 . - 0 ID=Phyra49211;Parent=Phyra49211;rank=1 scaffold_445 . exon 8529 8846 . - . ID=Phyra49211.1;Parent=Phyra49211;constitutive=1;rank=1 scaffold_445 ensembl protein_coding_gene 11937 12614 . - . ID=Phyra86067;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_445000001;logic_name=jgi_phyra1 scaffold_445 ensembl transcript 11937 12614 . - . ID=Phyra86067;Parent=Phyra86067;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_445 . CDS 11937 12614 . - 0 ID=Phyra86067;Parent=Phyra86067;rank=1 scaffold_445 . exon 11937 12614 . - . ID=Phyra86067.1;Parent=Phyra86067;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_441 1 12671 scaffold_441 . biological_region 234 235 0.999 - . logic_name=eponine scaffold_441 . repeat_region 889 1599 . ? . description=dust scaffold_441 . repeat_region 2408 2436 . ? . description=trf scaffold_441 . repeat_region 2408 2436 . ? . description=dust scaffold_441 . biological_region 2426 2429 0.999 - . logic_name=eponine scaffold_441 . biological_region 2457 2460 0.999 - . logic_name=eponine scaffold_441 . repeat_region 4452 4501 . ? . description=dust scaffold_441 . repeat_region 5033 5040 . ? . description=dust scaffold_441 . repeat_region 5844 5886 . ? . description=trf scaffold_441 . repeat_region 6301 11864 . ? . description=dust scaffold_441 ensembl protein_coding_gene 2257 2862 . + . ID=Phyra86061;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_441000001;logic_name=jgi_phyra1 scaffold_441 ensembl transcript 2257 2862 . + . ID=Phyra86061;Parent=Phyra86061;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_441 . CDS 2257 2862 . + 0 ID=Phyra86061;Parent=Phyra86061;rank=1 scaffold_441 . exon 2257 2862 . + . ID=Phyra86061.1;Parent=Phyra86061;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_437 1 12742 scaffold_437 . repeat_region 438 480 . ? . description=trf scaffold_437 . repeat_region 1167 2082 . ? . description=dust scaffold_437 . biological_region 2772 2772 0.999 + . logic_name=eponine scaffold_437 . biological_region 3320 3325 0.999 + . logic_name=eponine scaffold_437 . biological_region 3324 3329 0.999 - . logic_name=eponine scaffold_437 . biological_region 3345 3347 0.999 + . logic_name=eponine scaffold_437 . repeat_region 3879 9163 . ? . description=dust scaffold_437 ensembl protein_coding_gene 24 787 . - . ID=Phyra86055;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_437000001;logic_name=jgi_phyra1 scaffold_437 ensembl transcript 24 787 . - . ID=Phyra86055;Parent=Phyra86055;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_437 . CDS 24 195 . - 0 ID=Phyra86055;Parent=Phyra86055;rank=2 scaffold_437 . exon 24 195 . - . ID=Phyra86055.2;Parent=Phyra86055;constitutive=1;ensembl_phase=2;rank=2 scaffold_437 . CDS 579 787 . - 0 ID=Phyra86055;Parent=Phyra86055;rank=1 scaffold_437 . exon 579 787 . - . ID=Phyra86055.1;Parent=Phyra86055;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_438 1 12749 scaffold_438 . repeat_region 1082 2787 . ? . description=dust scaffold_438 . biological_region 6227 6231 0.999 + . logic_name=eponine scaffold_438 . repeat_region 10539 10559 . ? . description=trf scaffold_438 ensembl protein_coding_gene 11149 12620 . - . ID=Phyra86056;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_438000001;logic_name=jgi_phyra1 scaffold_438 ensembl transcript 11149 12620 . - . ID=Phyra86056;Parent=Phyra86056;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_438 . CDS 11149 11857 . - 0 ID=Phyra86056;Parent=Phyra86056;rank=3 scaffold_438 . exon 11149 11857 . - . ID=Phyra86056.3;Parent=Phyra86056;constitutive=1;ensembl_phase=2;rank=3 scaffold_438 . CDS 11920 11939 . - 0 ID=Phyra86056;Parent=Phyra86056;rank=2 scaffold_438 . exon 11920 11939 . - . ID=Phyra86056.2;Parent=Phyra86056;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_438 . CDS 12210 12620 . - 0 ID=Phyra86056;Parent=Phyra86056;rank=1 scaffold_438 . exon 12210 12620 . - . ID=Phyra86056.1;Parent=Phyra86056;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_436 1 12848 scaffold_436 . repeat_region 887 906 . ? . description=dust scaffold_436 . repeat_region 1786 1794 . ? . description=dust scaffold_436 . repeat_region 3060 3171 . ? . description=dust scaffold_436 . repeat_region 3465 3512 . ? . description=trf scaffold_436 . repeat_region 3465 3512 . ? . description=dust scaffold_436 . repeat_region 4766 4903 . ? . description=dust scaffold_436 . repeat_region 4766 4903 . + . description=(TCTA)n scaffold_436 . repeat_region 4769 4903 . ? . description=trf scaffold_436 . biological_region 5310 5311 0.999 + . logic_name=eponine scaffold_436 . biological_region 5351 5356 0.999 + . logic_name=eponine scaffold_436 . biological_region 5392 5397 0.999 + . logic_name=eponine scaffold_436 . biological_region 6088 6091 0.999 + . logic_name=eponine scaffold_436 ensembl protein_coding_gene 2405 3052 . - . ID=Phyra49009;biotype=protein_coding;external_name=gwEuk.436.2.1;logic_name=jgi_phyra1 scaffold_436 ensembl transcript 2405 3052 . - . ID=Phyra49009;Parent=Phyra49009;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_436 . CDS 2405 3052 . - 0 ID=Phyra49009;Parent=Phyra49009;rank=1 scaffold_436 . exon 2405 3052 . - . ID=Phyra49009.1;Parent=Phyra49009;constitutive=1;rank=1 scaffold_436 ensembl protein_coding_gene 5247 8381 . + . ID=Phyra86053;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_436000002;logic_name=jgi_phyra1 scaffold_436 ensembl transcript 5247 8381 . + . ID=Phyra86053;Parent=Phyra86053;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_436 . CDS 5247 8381 . + 0 ID=Phyra86053;Parent=Phyra86053;rank=1 scaffold_436 . exon 5247 8381 . + . ID=Phyra86053.1;Parent=Phyra86053;constitutive=1;rank=1 scaffold_436 ensembl protein_coding_gene 11633 12842 . + . ID=Phyra86054;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_436000003;logic_name=jgi_phyra1 scaffold_436 ensembl transcript 11633 12842 . + . ID=Phyra86054;Parent=Phyra86054;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_436 . CDS 11633 12000 . + 0 ID=Phyra86054;Parent=Phyra86054;rank=1 scaffold_436 . exon 11633 12000 . + . ID=Phyra86054.1;Parent=Phyra86054;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_436 . CDS 12297 12639 . + 0 ID=Phyra86054;Parent=Phyra86054;rank=2 scaffold_436 . exon 12297 12639 . + . ID=Phyra86054.2;Parent=Phyra86054;constitutive=1;ensembl_phase=2;rank=2 scaffold_436 . CDS 12710 12842 . + 0 ID=Phyra86054;Parent=Phyra86054;rank=3 scaffold_436 . exon 12710 12842 . + . ID=Phyra86054.3;Parent=Phyra86054;constitutive=1;ensembl_end_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_433 1 12869 scaffold_433 ensembl protein_coding_gene 4908 6660 . - . ID=Phyra86046;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_433000001;logic_name=jgi_phyra1 scaffold_433 ensembl transcript 4908 6660 . - . ID=Phyra86046;Parent=Phyra86046;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_433 . CDS 4908 5055 . - 0 ID=Phyra86046;Parent=Phyra86046;rank=5 scaffold_433 . exon 4908 5055 . - . ID=Phyra86046.5;Parent=Phyra86046;constitutive=1;ensembl_phase=2;rank=5 scaffold_433 . CDS 5120 5619 . - 0 ID=Phyra86046;Parent=Phyra86046;rank=4 scaffold_433 . exon 5120 5619 . - . ID=Phyra86046.4;Parent=Phyra86046;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_433 . CDS 5717 6021 . - 0 ID=Phyra86046;Parent=Phyra86046;rank=3 scaffold_433 . exon 5717 6021 . - . ID=Phyra86046.3;Parent=Phyra86046;constitutive=1;ensembl_phase=1;rank=3 scaffold_433 . CDS 6096 6238 . - 0 ID=Phyra86046;Parent=Phyra86046;rank=2 scaffold_433 . exon 6096 6238 . - . ID=Phyra86046.2;Parent=Phyra86046;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_433 . CDS 6260 6660 . - 0 ID=Phyra86046;Parent=Phyra86046;rank=1 scaffold_433 . exon 6260 6660 . - . ID=Phyra86046.1;Parent=Phyra86046;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_433 . repeat_region 6830 6842 . ? . description=dust scaffold_433 . biological_region 7331 7333 0.999 - . logic_name=eponine scaffold_433 . biological_region 10735 10736 0.999 + . logic_name=eponine scaffold_433 ensembl protein_coding_gene 9842 11843 . - . ID=Phyra72398;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_433000001;logic_name=jgi_phyra1 scaffold_433 ensembl transcript 9842 11843 . - . ID=Phyra72398;Parent=Phyra72398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_433 . CDS 9842 11584 . - 0 ID=Phyra72398;Parent=Phyra72398;rank=3 scaffold_433 . exon 9842 11584 . - . ID=Phyra72398.3;Parent=Phyra72398;constitutive=1;rank=3 scaffold_433 . CDS 11662 11705 . - 0 ID=Phyra72398;Parent=Phyra72398;rank=2 scaffold_433 . exon 11662 11705 . - . ID=Phyra72398.2;Parent=Phyra72398;constitutive=1;ensembl_phase=1;rank=2 scaffold_433 . CDS 11774 11843 . - 0 ID=Phyra72398;Parent=Phyra72398;rank=1 scaffold_433 . exon 11774 11843 . - . ID=Phyra72398.1;Parent=Phyra72398;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_433 ensembl protein_coding_gene 7065 9555 . - . ID=Phyra86047;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_433000002;logic_name=jgi_phyra1 scaffold_433 ensembl transcript 7065 9555 . - . ID=Phyra86047;Parent=Phyra86047;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_433 . CDS 7065 9068 . - 0 ID=Phyra86047;Parent=Phyra86047;rank=4 scaffold_433 . exon 7065 9068 . - . ID=Phyra86047.4;Parent=Phyra86047;constitutive=1;rank=4 scaffold_433 . CDS 9133 9272 . - 0 ID=Phyra86047;Parent=Phyra86047;rank=3 scaffold_433 . exon 9133 9272 . - . ID=Phyra86047.3;Parent=Phyra86047;constitutive=1;ensembl_phase=1;rank=3 scaffold_433 . CDS 9378 9382 . - 0 ID=Phyra86047;Parent=Phyra86047;rank=2 scaffold_433 . exon 9378 9382 . - . ID=Phyra86047.2;Parent=Phyra86047;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_433 . CDS 9458 9555 . - 0 ID=Phyra86047;Parent=Phyra86047;rank=1 scaffold_433 . exon 9458 9555 . - . ID=Phyra86047.1;Parent=Phyra86047;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_432 1 12898 scaffold_432 . biological_region 1335 1337 0.999 - . logic_name=eponine scaffold_432 . biological_region 2587 2590 0.999 + . logic_name=eponine scaffold_432 . biological_region 4368 4368 0.999 + . logic_name=eponine scaffold_432 . biological_region 4565 4569 0.999 - . logic_name=eponine scaffold_432 . biological_region 5410 5412 0.999 + . logic_name=eponine scaffold_432 ensembl protein_coding_gene 2410 6015 . + . ID=Phyra86041;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_432000001;logic_name=jgi_phyra1 scaffold_432 ensembl transcript 2410 6015 . + . ID=Phyra86041;Parent=Phyra86041;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_432 . CDS 2410 6015 . + 0 ID=Phyra86041;Parent=Phyra86041;rank=1 scaffold_432 . exon 2410 6015 . + . ID=Phyra86041.1;Parent=Phyra86041;constitutive=1;rank=1 scaffold_432 ensembl protein_coding_gene 6667 8292 . + . ID=Phyra72397;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_432000001;logic_name=jgi_phyra1 scaffold_432 ensembl transcript 6667 8292 . + . ID=Phyra72397;Parent=Phyra72397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_432 . CDS 6667 8292 . + 0 ID=Phyra72397;Parent=Phyra72397;rank=1 scaffold_432 . exon 6667 8292 . + . ID=Phyra72397.1;Parent=Phyra72397;constitutive=1;rank=1 scaffold_432 ensembl protein_coding_gene 8414 9430 . - . ID=Phyra86043;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_432000003;logic_name=jgi_phyra1 scaffold_432 ensembl transcript 8414 9430 . - . ID=Phyra86043;Parent=Phyra86043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_432 . CDS 8414 9430 . - 0 ID=Phyra86043;Parent=Phyra86043;rank=1 scaffold_432 . exon 8414 9430 . - . ID=Phyra86043.1;Parent=Phyra86043;constitutive=1;rank=1 scaffold_432 ensembl protein_coding_gene 9818 11373 . + . ID=Phyra86044;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_432000004;logic_name=jgi_phyra1 scaffold_432 ensembl transcript 9818 11373 . + . ID=Phyra86044;Parent=Phyra86044;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_432 . CDS 9818 10477 . + 0 ID=Phyra86044;Parent=Phyra86044;rank=1 scaffold_432 . exon 9818 10477 . + . ID=Phyra86044.1;Parent=Phyra86044;constitutive=1;rank=1 scaffold_432 . CDS 10704 10748 . + 0 ID=Phyra86044;Parent=Phyra86044;rank=2 scaffold_432 . exon 10704 10748 . + . ID=Phyra86044.2;Parent=Phyra86044;constitutive=1;rank=2 scaffold_432 . CDS 10813 10879 . + 0 ID=Phyra86044;Parent=Phyra86044;rank=3 scaffold_432 . exon 10813 10879 . + . ID=Phyra86044.3;Parent=Phyra86044;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_432 . CDS 10940 11373 . + 0 ID=Phyra86044;Parent=Phyra86044;rank=4 scaffold_432 . exon 10940 11373 . + . ID=Phyra86044.4;Parent=Phyra86044;constitutive=1;ensembl_phase=1;rank=4 scaffold_432 ensembl protein_coding_gene 11938 12858 . - . ID=Phyra86045;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_432000005;logic_name=jgi_phyra1 scaffold_432 ensembl transcript 11938 12858 . - . ID=Phyra86045;Parent=Phyra86045;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_432 . CDS 11938 12858 . - 0 ID=Phyra86045;Parent=Phyra86045;rank=1 scaffold_432 . exon 11938 12858 . - . ID=Phyra86045.1;Parent=Phyra86045;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_439 1 12918 scaffold_439 . repeat_region 1559 1588 . ? . description=trf scaffold_439 . repeat_region 1827 2886 . ? . description=dust scaffold_439 . biological_region 2930 2933 0.999 + . logic_name=eponine scaffold_439 . biological_region 3166 3173 0.999 - . logic_name=eponine scaffold_439 . biological_region 3186 3191 0.999 + . logic_name=eponine scaffold_439 . biological_region 3225 3226 0.999 + . logic_name=eponine scaffold_439 . repeat_region 3488 4193 . - . description=GypsyPi-1c_I-int scaffold_439 . biological_region 4091 4095 0.999 + . logic_name=eponine scaffold_439 . biological_region 4208 4211 0.999 - . logic_name=eponine scaffold_439 . biological_region 4235 4238 0.999 - . logic_name=eponine scaffold_439 . biological_region 4313 4316 0.999 + . logic_name=eponine scaffold_439 . repeat_region 4367 4495 . ? . description=dust scaffold_439 . repeat_region 4507 4828 . - . description=GypsyPi-1c_I-int scaffold_439 . biological_region 5271 5277 0.999 + . logic_name=eponine scaffold_439 . biological_region 6159 6163 0.999 - . logic_name=eponine scaffold_439 . repeat_region 6184 6191 . ? . description=dust scaffold_439 ensembl protein_coding_gene 3353 7219 . - . ID=Phyra86057;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_439000001;logic_name=jgi_phyra1 scaffold_439 ensembl transcript 3353 7219 . - . ID=Phyra86057;Parent=Phyra86057;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_439 . CDS 3353 3358 . - 0 ID=Phyra86057;Parent=Phyra86057;rank=6 scaffold_439 . exon 3353 3358 . - . ID=Phyra86057.6;Parent=Phyra86057;constitutive=1;rank=6 scaffold_439 . CDS 3627 4247 . - 0 ID=Phyra86057;Parent=Phyra86057;rank=5 scaffold_439 . exon 3627 4247 . - . ID=Phyra86057.5;Parent=Phyra86057;constitutive=1;rank=5 scaffold_439 . CDS 4545 5141 . - 0 ID=Phyra86057;Parent=Phyra86057;rank=4 scaffold_439 . exon 4545 5141 . - . ID=Phyra86057.4;Parent=Phyra86057;constitutive=1;rank=4 scaffold_439 . CDS 5200 6137 . - 0 ID=Phyra86057;Parent=Phyra86057;rank=3 scaffold_439 . exon 5200 6137 . - . ID=Phyra86057.3;Parent=Phyra86057;constitutive=1;ensembl_phase=1;rank=3 scaffold_439 . CDS 6172 6286 . - 0 ID=Phyra86057;Parent=Phyra86057;rank=2 scaffold_439 . exon 6172 6286 . - . ID=Phyra86057.2;Parent=Phyra86057;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_439 . CDS 6407 7219 . - 0 ID=Phyra86057;Parent=Phyra86057;rank=1 scaffold_439 . exon 6407 7219 . - . ID=Phyra86057.1;Parent=Phyra86057;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_434 1 12974 scaffold_434 . repeat_region 1436 4253 . ? . description=dust scaffold_434 ensembl protein_coding_gene 5369 5914 . + . ID=Phyra86049;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_434000001;logic_name=jgi_phyra1 scaffold_434 ensembl transcript 5369 5914 . + . ID=Phyra86049;Parent=Phyra86049;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_434 . CDS 5369 5914 . + 0 ID=Phyra86049;Parent=Phyra86049;rank=1 scaffold_434 . exon 5369 5914 . + . ID=Phyra86049.1;Parent=Phyra86049;constitutive=1;rank=1 scaffold_434 . repeat_region 7941 8704 . ? . description=trf scaffold_434 . biological_region 7963 7967 0.999 + . logic_name=eponine scaffold_434 . biological_region 8002 8005 0.999 - . logic_name=eponine scaffold_434 . repeat_region 8015 8627 . ? . description=trf scaffold_434 . repeat_region 8018 8704 . ? . description=trf scaffold_434 . biological_region 8092 8095 0.999 - . logic_name=eponine scaffold_434 . repeat_region 8228 8704 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_431 1 12991 scaffold_431 . repeat_region 1222 1280 . ? . description=dust scaffold_431 . repeat_region 1521 2499 . ? . description=dust scaffold_431 . repeat_region 3155 3295 . + . description=GypsyPi-1c_LTR scaffold_431 . repeat_region 4409 8935 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_428 1 13059 scaffold_428 . biological_region 1930 1934 0.999 - . logic_name=eponine scaffold_428 . biological_region 5853 5854 0.999 + . logic_name=eponine scaffold_428 ensembl protein_coding_gene 2874 3530 . - . ID=Phyra86033;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_428000001;logic_name=jgi_phyra1 scaffold_428 ensembl transcript 2874 3530 . - . ID=Phyra86033;Parent=Phyra86033;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_428 . CDS 2874 3530 . - 0 ID=Phyra86033;Parent=Phyra86033;rank=1 scaffold_428 . exon 2874 3530 . - . ID=Phyra86033.1;Parent=Phyra86033;constitutive=1;rank=1 scaffold_428 ensembl protein_coding_gene 5864 8733 . - . ID=Phyra86034;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_428000002;logic_name=jgi_phyra1 scaffold_428 ensembl transcript 5864 8733 . - . ID=Phyra86034;Parent=Phyra86034;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_428 . CDS 5864 7069 . - 0 ID=Phyra86034;Parent=Phyra86034;rank=4 scaffold_428 . exon 5864 7069 . - . ID=Phyra86034.4;Parent=Phyra86034;constitutive=1;rank=4 scaffold_428 . CDS 7143 7256 . - 0 ID=Phyra86034;Parent=Phyra86034;rank=3 scaffold_428 . CDS 7327 7463 . - 0 ID=Phyra86034;Parent=Phyra86034;rank=2 scaffold_428 . CDS 8019 8733 . - 0 ID=Phyra86034;Parent=Phyra86034;rank=1 scaffold_428 . repeat_region 8498 8541 . ? . description=dust scaffold_428 . repeat_region 8501 8541 . ? . description=trf scaffold_428 . repeat_region 9746 9772 . ? . description=dust scaffold_428 . repeat_region 11408 11440 . ? . description=dust scaffold_428 . exon 7143 7256 . - . ID=Phyra86034.3;Parent=Phyra86034;constitutive=1;rank=3 scaffold_428 . exon 7327 7463 . - . ID=Phyra86034.2;Parent=Phyra86034;constitutive=1;ensembl_phase=1;rank=2 scaffold_428 . exon 8019 8733 . - . ID=Phyra86034.1;Parent=Phyra86034;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_429 1 13066 scaffold_429 . biological_region 1003 1005 0.999 + . logic_name=eponine scaffold_429 . repeat_region 3089 3096 . ? . description=dust scaffold_429 ensembl protein_coding_gene 339 1394 . - . ID=Phyra72396;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_429000001;logic_name=jgi_phyra1 scaffold_429 ensembl transcript 339 1394 . - . ID=Phyra72396;Parent=Phyra72396;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_429 . CDS 339 1394 . - 0 ID=Phyra72396;Parent=Phyra72396;rank=1 scaffold_429 . exon 339 1394 . - . ID=Phyra72396.1;Parent=Phyra72396;constitutive=1;rank=1 scaffold_429 ensembl protein_coding_gene 2316 3238 . - . ID=Phyra86036;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_429000002;logic_name=jgi_phyra1 scaffold_429 ensembl transcript 2316 3238 . - . ID=Phyra86036;Parent=Phyra86036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_429 . CDS 2316 2454 . - 0 ID=Phyra86036;Parent=Phyra86036;rank=5 scaffold_429 . exon 2316 2454 . - . ID=Phyra86036.5;Parent=Phyra86036;constitutive=1;ensembl_phase=2;rank=5 scaffold_429 . CDS 2538 2715 . - 0 ID=Phyra86036;Parent=Phyra86036;rank=4 scaffold_429 . exon 2538 2715 . - . ID=Phyra86036.4;Parent=Phyra86036;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_429 . CDS 2780 2851 . - 0 ID=Phyra86036;Parent=Phyra86036;rank=3 scaffold_429 . exon 2780 2851 . - . ID=Phyra86036.3;Parent=Phyra86036;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_429 . CDS 2910 3034 . - 0 ID=Phyra86036;Parent=Phyra86036;rank=2 scaffold_429 . exon 2910 3034 . - . ID=Phyra86036.2;Parent=Phyra86036;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_429 . CDS 3102 3238 . - 0 ID=Phyra86036;Parent=Phyra86036;rank=1 scaffold_429 . exon 3102 3238 . - . ID=Phyra86036.1;Parent=Phyra86036;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_429 ensembl pseudogene 12324 12813 . - . ID=Phyra48846;biotype=pseudogene;external_name=gwEuk.429.2.1;logic_name=jgi_phyra1 scaffold_429 ensembl pseudogene 12324 12813 . - . ID=Phyra48846;Parent=Phyra48846;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_429 . exon 12324 12813 . - . ID=Phyra48846.1;Parent=Phyra48846;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_429 ensembl protein_coding_gene 6852 8001 . - . ID=Phyra86037;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_429000003;logic_name=jgi_phyra1 scaffold_429 ensembl transcript 6852 8001 . - . ID=Phyra86037;Parent=Phyra86037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_429 . CDS 6852 7708 . - 0 ID=Phyra86037;Parent=Phyra86037;rank=2 scaffold_429 . exon 6852 7708 . - . ID=Phyra86037.2;Parent=Phyra86037;constitutive=1;ensembl_phase=1;rank=2 scaffold_429 . CDS 7791 8001 . - 0 ID=Phyra86037;Parent=Phyra86037;rank=1 scaffold_429 . exon 7791 8001 . - . ID=Phyra86037.1;Parent=Phyra86037;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_429 ensembl protein_coding_gene 8318 9286 . - . ID=Phyra86038;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_429000004;logic_name=jgi_phyra1 scaffold_429 ensembl transcript 8318 9286 . - . ID=Phyra86038;Parent=Phyra86038;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_429 . CDS 8318 9286 . - 0 ID=Phyra86038;Parent=Phyra86038;rank=1 scaffold_429 . exon 8318 9286 . - . ID=Phyra86038.1;Parent=Phyra86038;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_430 1 13099 scaffold_430 . repeat_region 1524 2065 . ? . description=dust scaffold_430 . repeat_region 3999 5231 . ? . description=dust scaffold_430 . repeat_region 6273 6302 . ? . description=trf scaffold_430 ensembl protein_coding_gene 5281 9781 . - . ID=Phyra86040;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_430000001;logic_name=jgi_phyra1 scaffold_430 ensembl transcript 5281 9781 . - . ID=Phyra86040;Parent=Phyra86040;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_430 . CDS 5281 5337 . - 0 ID=Phyra86040;Parent=Phyra86040;rank=9 scaffold_430 . exon 5281 5337 . - . ID=Phyra86040.9;Parent=Phyra86040;constitutive=1;rank=9 scaffold_430 . CDS 5390 5998 . - 0 ID=Phyra86040;Parent=Phyra86040;rank=8 scaffold_430 . exon 5390 5998 . - . ID=Phyra86040.8;Parent=Phyra86040;constitutive=1;rank=8 scaffold_430 . CDS 6081 6332 . - 0 ID=Phyra86040;Parent=Phyra86040;rank=7 scaffold_430 . exon 6081 6332 . - . ID=Phyra86040.7;Parent=Phyra86040;constitutive=1;rank=7 scaffold_430 . CDS 6360 6384 . - 0 ID=Phyra86040;Parent=Phyra86040;rank=6 scaffold_430 . exon 6360 6384 . - . ID=Phyra86040.6;Parent=Phyra86040;constitutive=1;ensembl_phase=2;rank=6 scaffold_430 . CDS 6445 6543 . - 0 ID=Phyra86040;Parent=Phyra86040;rank=5 scaffold_430 . exon 6445 6543 . - . ID=Phyra86040.5;Parent=Phyra86040;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_430 . CDS 7228 8180 . - 0 ID=Phyra86040;Parent=Phyra86040;rank=4 scaffold_430 . CDS 8625 9089 . - 0 ID=Phyra86040;Parent=Phyra86040;rank=3 scaffold_430 . CDS 9178 9556 . - 0 ID=Phyra86040;Parent=Phyra86040;rank=2 scaffold_430 . CDS 9699 9781 . - 0 ID=Phyra86040;Parent=Phyra86040;rank=1 scaffold_430 . biological_region 9550 9554 0.999 + . logic_name=eponine scaffold_430 . biological_region 12083 12087 0.999 + . logic_name=eponine scaffold_430 . biological_region 12203 12203 0.999 + . logic_name=eponine scaffold_430 . exon 7228 8180 . - . ID=Phyra86040.4;Parent=Phyra86040;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_430 . exon 8625 9089 . - . ID=Phyra86040.3;Parent=Phyra86040;constitutive=1;rank=3 scaffold_430 . exon 9178 9556 . - . ID=Phyra86040.2;Parent=Phyra86040;constitutive=1;ensembl_phase=2;rank=2 scaffold_430 . exon 9699 9781 . - . ID=Phyra86040.1;Parent=Phyra86040;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_425 1 13126 scaffold_425 . repeat_region 3156 3176 . ? . description=trf scaffold_425 . repeat_region 4098 4105 . ? . description=dust scaffold_425 . repeat_region 4863 7387 . ? . description=dust scaffold_425 ensembl protein_coding_gene 1313 2848 . + . ID=Phyra86028;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_425000001;logic_name=jgi_phyra1 scaffold_425 ensembl transcript 1313 2848 . + . ID=Phyra86028;Parent=Phyra86028;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_425 . CDS 1313 2848 . + 0 ID=Phyra86028;Parent=Phyra86028;rank=1 scaffold_425 . exon 1313 2848 . + . ID=Phyra86028.1;Parent=Phyra86028;constitutive=1;rank=1 scaffold_425 ensembl protein_coding_gene 4215 4862 . - . ID=Phyra86029;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_425000002;logic_name=jgi_phyra1 scaffold_425 ensembl transcript 4215 4862 . - . ID=Phyra86029;Parent=Phyra86029;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_425 . CDS 4215 4862 . - 0 ID=Phyra86029;Parent=Phyra86029;rank=1 scaffold_425 . exon 4215 4862 . - . ID=Phyra86029.1;Parent=Phyra86029;constitutive=1;rank=1 scaffold_425 . biological_region 7499 7502 0.999 - . logic_name=eponine scaffold_425 . biological_region 7557 7561 0.999 + . logic_name=eponine scaffold_425 . biological_region 8615 8619 0.999 - . logic_name=eponine scaffold_425 . biological_region 8674 8677 0.999 + . logic_name=eponine scaffold_425 . biological_region 8764 8765 0.999 + . logic_name=eponine scaffold_425 . biological_region 8931 8934 0.999 - . logic_name=eponine scaffold_425 . biological_region 10588 10591 0.999 + . logic_name=eponine scaffold_425 ensembl protein_coding_gene 9030 13121 . + . ID=Phyra86030;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_425000003;logic_name=jgi_phyra1 scaffold_425 ensembl transcript 9030 13121 . + . ID=Phyra86030;Parent=Phyra86030;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_425 . CDS 9030 13121 . + 0 ID=Phyra86030;Parent=Phyra86030;rank=1 scaffold_425 . exon 9030 13121 . + . ID=Phyra86030.1;Parent=Phyra86030;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_426 1 13126 scaffold_426 . repeat_region 808 6944 . ? . description=dust scaffold_426 ensembl protein_coding_gene 397 10196 . - . ID=Phyra86031;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_426000001;logic_name=jgi_phyra1 scaffold_426 ensembl transcript 397 10196 . - . ID=Phyra86031;Parent=Phyra86031;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_426 . CDS 397 451 . - 0 ID=Phyra86031;Parent=Phyra86031;rank=3 scaffold_426 . exon 397 451 . - . ID=Phyra86031.3;Parent=Phyra86031;constitutive=1;ensembl_phase=2;rank=3 scaffold_426 . CDS 487 692 . - 0 ID=Phyra86031;Parent=Phyra86031;rank=2 scaffold_426 . exon 487 692 . - . ID=Phyra86031.2;Parent=Phyra86031;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_426 . CDS 6960 10196 . - 0 ID=Phyra86031;Parent=Phyra86031;rank=1 scaffold_426 . biological_region 10140 10143 0.999 + . logic_name=eponine scaffold_426 . biological_region 10191 10197 0.999 - . logic_name=eponine scaffold_426 . biological_region 10196 10200 0.999 + . logic_name=eponine scaffold_426 . biological_region 10265 10270 0.999 - . logic_name=eponine scaffold_426 . exon 6960 10196 . - . ID=Phyra86031.1;Parent=Phyra86031;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_424 1 13159 scaffold_424 . repeat_region 172 274 . - . description=Gypsy-1-I_PI-int scaffold_424 . biological_region 1360 1364 0.999 + . logic_name=eponine scaffold_424 . repeat_region 2439 2538 . + . description=GypsyPi-1c_I-int scaffold_424 . biological_region 2903 2906 0.999 + . logic_name=eponine scaffold_424 . biological_region 3005 3009 0.999 + . logic_name=eponine scaffold_424 . repeat_region 3530 5822 . + . description=GypsyPi-1c_I-int scaffold_424 . repeat_region 6075 6353 . + . description=GypsyPi-1c_I-int scaffold_424 ensembl protein_coding_gene 5320 5754 . + . ID=Phyra72395;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_424000001;logic_name=jgi_phyra1 scaffold_424 ensembl transcript 5320 5754 . + . ID=Phyra72395;Parent=Phyra72395;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_424 . CDS 5320 5754 . + 0 ID=Phyra72395;Parent=Phyra72395;rank=1 scaffold_424 . exon 5320 5754 . + . ID=Phyra72395.1;Parent=Phyra72395;constitutive=1;rank=1 scaffold_424 ensembl protein_coding_gene 1080 2153 . + . ID=Phyra86024;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_424000001;logic_name=jgi_phyra1 scaffold_424 ensembl transcript 1080 2153 . + . ID=Phyra86024;Parent=Phyra86024;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_424 . CDS 1080 1961 . + 0 ID=Phyra86024;Parent=Phyra86024;rank=1 scaffold_424 . exon 1080 1961 . + . ID=Phyra86024.1;Parent=Phyra86024;constitutive=1;rank=1 scaffold_424 . CDS 2094 2153 . + 0 ID=Phyra86024;Parent=Phyra86024;rank=2 scaffold_424 . exon 2094 2153 . + . ID=Phyra86024.2;Parent=Phyra86024;constitutive=1;rank=2 scaffold_424 ensembl protein_coding_gene 3206 5205 . + . ID=Phyra86025;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_424000002;logic_name=jgi_phyra1 scaffold_424 ensembl transcript 3206 5205 . + . ID=Phyra86025;Parent=Phyra86025;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_424 . CDS 3206 3473 . + 0 ID=Phyra86025;Parent=Phyra86025;rank=1 scaffold_424 . exon 3206 3473 . + . ID=Phyra86025.1;Parent=Phyra86025;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_424 . CDS 3569 4197 . + 0 ID=Phyra86025;Parent=Phyra86025;rank=2 scaffold_424 . exon 3569 4197 . + . ID=Phyra86025.2;Parent=Phyra86025;constitutive=1;ensembl_phase=1;rank=2 scaffold_424 . CDS 4240 4449 . + 0 ID=Phyra86025;Parent=Phyra86025;rank=3 scaffold_424 . exon 4240 4449 . + . ID=Phyra86025.3;Parent=Phyra86025;constitutive=1;rank=3 scaffold_424 . CDS 4753 5205 . + 0 ID=Phyra86025;Parent=Phyra86025;rank=4 scaffold_424 . exon 4753 5205 . + . ID=Phyra86025.4;Parent=Phyra86025;constitutive=1;rank=4 scaffold_424 . repeat_region 7219 12042 . ? . description=dust scaffold_424 ensembl protein_coding_gene 12359 12691 . - . ID=Phyra86027;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_424000004;logic_name=jgi_phyra1 scaffold_424 ensembl transcript 12359 12691 . - . ID=Phyra86027;Parent=Phyra86027;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_424 . CDS 12359 12691 . - 0 ID=Phyra86027;Parent=Phyra86027;rank=1 scaffold_424 . exon 12359 12691 . - . ID=Phyra86027.1;Parent=Phyra86027;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_415 1 13205 scaffold_415 . repeat_region 423 432 . ? . description=dust scaffold_415 . biological_region 1884 1886 0.999 + . logic_name=eponine scaffold_415 ensembl protein_coding_gene 1511 3844 . - . ID=Phyra48671;biotype=protein_coding;external_name=gwEuk.415.1.1;logic_name=jgi_phyra1 scaffold_415 ensembl transcript 1511 3844 . - . ID=Phyra48671;Parent=Phyra48671;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_415 . CDS 1511 2944 . - 0 ID=Phyra48671;Parent=Phyra48671;rank=4 scaffold_415 . exon 1511 2944 . - . ID=Phyra48671.4;Parent=Phyra48671;constitutive=1;rank=4 scaffold_415 . CDS 3020 3211 . - 0 ID=Phyra48671;Parent=Phyra48671;rank=3 scaffold_415 . exon 3020 3211 . - . ID=Phyra48671.3;Parent=Phyra48671;constitutive=1;rank=3 scaffold_415 . CDS 3278 3329 . - 0 ID=Phyra48671;Parent=Phyra48671;rank=2 scaffold_415 . exon 3278 3329 . - . ID=Phyra48671.2;Parent=Phyra48671;constitutive=1;ensembl_phase=2;rank=2 scaffold_415 . CDS 3411 3844 . - 0 ID=Phyra48671;Parent=Phyra48671;rank=1 scaffold_415 . exon 3411 3844 . - . ID=Phyra48671.1;Parent=Phyra48671;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_415 ensembl protein_coding_gene 230 1357 . + . ID=Phyra86009;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_415000001;logic_name=jgi_phyra1 scaffold_415 ensembl transcript 230 1357 . + . ID=Phyra86009;Parent=Phyra86009;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_415 . CDS 230 391 . + 0 ID=Phyra86009;Parent=Phyra86009;rank=1 scaffold_415 . exon 230 391 . + . ID=Phyra86009.1;Parent=Phyra86009;constitutive=1;rank=1 scaffold_415 . CDS 464 540 . + 0 ID=Phyra86009;Parent=Phyra86009;rank=2 scaffold_415 . exon 464 540 . + . ID=Phyra86009.2;Parent=Phyra86009;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_415 . CDS 741 775 . + 0 ID=Phyra86009;Parent=Phyra86009;rank=3 scaffold_415 . exon 741 775 . + . ID=Phyra86009.3;Parent=Phyra86009;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_415 . CDS 1009 1188 . + 0 ID=Phyra86009;Parent=Phyra86009;rank=4 scaffold_415 . exon 1009 1188 . + . ID=Phyra86009.4;Parent=Phyra86009;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_415 . CDS 1260 1357 . + 0 ID=Phyra86009;Parent=Phyra86009;rank=5 scaffold_415 . exon 1260 1357 . + . ID=Phyra86009.5;Parent=Phyra86009;constitutive=1;ensembl_phase=1;rank=5 scaffold_415 ensembl protein_coding_gene 7865 8457 . - . ID=Phyra86011;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_415000003;logic_name=jgi_phyra1 scaffold_415 ensembl transcript 7865 8457 . - . ID=Phyra86011;Parent=Phyra86011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_415 . CDS 7865 7926 . - 0 ID=Phyra86011;Parent=Phyra86011;rank=2 scaffold_415 . exon 7865 7926 . - . ID=Phyra86011.2;Parent=Phyra86011;constitutive=1;ensembl_phase=1;rank=2 scaffold_415 . CDS 8037 8457 . - 0 ID=Phyra86011;Parent=Phyra86011;rank=1 scaffold_415 . exon 8037 8457 . - . ID=Phyra86011.1;Parent=Phyra86011;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_440 1 13215 scaffold_440 . biological_region 130 133 0.999 - . logic_name=eponine scaffold_440 . biological_region 182 184 0.999 - . logic_name=eponine scaffold_440 . repeat_region 527 625 . - . description=GypsyPi-1c_I-int scaffold_440 . repeat_region 1255 1386 . ? . description=dust scaffold_440 . repeat_region 2412 2420 . ? . description=dust scaffold_440 . repeat_region 4232 4240 . ? . description=dust scaffold_440 . biological_region 4276 4279 0.999 + . logic_name=eponine scaffold_440 . biological_region 4391 4392 0.999 + . logic_name=eponine scaffold_440 . repeat_region 4912 6961 . ? . description=dust scaffold_440 ensembl protein_coding_gene 1787 3667 . + . ID=Phyra86058;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_440000001;logic_name=jgi_phyra1 scaffold_440 ensembl transcript 1787 3667 . + . ID=Phyra86058;Parent=Phyra86058;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_440 . CDS 1787 2406 . + 0 ID=Phyra86058;Parent=Phyra86058;rank=1 scaffold_440 . exon 1787 2406 . + . ID=Phyra86058.1;Parent=Phyra86058;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_440 . CDS 2497 2805 . + 0 ID=Phyra86058;Parent=Phyra86058;rank=2 scaffold_440 . exon 2497 2805 . + . ID=Phyra86058.2;Parent=Phyra86058;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_440 . CDS 2884 3667 . + 0 ID=Phyra86058;Parent=Phyra86058;rank=3 scaffold_440 . exon 2884 3667 . + . ID=Phyra86058.3;Parent=Phyra86058;constitutive=1;ensembl_phase=2;rank=3 scaffold_440 ensembl protein_coding_gene 4270 4635 . - . ID=Phyra86059;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_440000002;logic_name=jgi_phyra1 scaffold_440 ensembl transcript 4270 4635 . - . ID=Phyra86059;Parent=Phyra86059;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_440 . CDS 4270 4635 . - 0 ID=Phyra86059;Parent=Phyra86059;rank=1 scaffold_440 . exon 4270 4635 . - . ID=Phyra86059.1;Parent=Phyra86059;constitutive=1;rank=1 scaffold_440 ensembl protein_coding_gene 8994 9967 . + . ID=Phyra86060;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_440000003;logic_name=jgi_phyra1 scaffold_440 ensembl transcript 8994 9967 . + . ID=Phyra86060;Parent=Phyra86060;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_440 . CDS 8994 9038 . + 0 ID=Phyra86060;Parent=Phyra86060;rank=1 scaffold_440 . exon 8994 9038 . + . ID=Phyra86060.1;Parent=Phyra86060;constitutive=1;rank=1 scaffold_440 . CDS 9067 9234 . + 0 ID=Phyra86060;Parent=Phyra86060;rank=2 scaffold_440 . exon 9067 9234 . + . ID=Phyra86060.2;Parent=Phyra86060;constitutive=1;rank=2 scaffold_440 . CDS 9516 9780 . + 0 ID=Phyra86060;Parent=Phyra86060;rank=3 scaffold_440 . exon 9516 9780 . + . ID=Phyra86060.3;Parent=Phyra86060;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_440 . CDS 9864 9967 . + 0 ID=Phyra86060;Parent=Phyra86060;rank=4 scaffold_440 . exon 9864 9967 . + . ID=Phyra86060.4;Parent=Phyra86060;constitutive=1;ensembl_phase=1;rank=4 ##gff-version 3 ##sequence-region scaffold_419 1 13320 scaffold_419 . repeat_region 1 70 . - . description=GypsyPi-1c_I-int scaffold_419 . biological_region 550 551 0.999 - . logic_name=eponine scaffold_419 . biological_region 602 607 0.999 - . logic_name=eponine scaffold_419 . biological_region 612 612 0.999 + . logic_name=eponine scaffold_419 . biological_region 641 644 0.999 + . logic_name=eponine scaffold_419 . biological_region 659 661 0.999 + . logic_name=eponine scaffold_419 . biological_region 679 681 0.999 + . logic_name=eponine scaffold_419 . biological_region 704 709 0.999 - . logic_name=eponine scaffold_419 . biological_region 756 760 0.999 - . logic_name=eponine scaffold_419 . biological_region 2270 2274 0.999 - . logic_name=eponine scaffold_419 ensembl protein_coding_gene 33 2553 . - . ID=Phyra86017;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_419000001;logic_name=jgi_phyra1 scaffold_419 ensembl transcript 33 2553 . - . ID=Phyra86017;Parent=Phyra86017;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_419 . CDS 33 693 . - 0 ID=Phyra86017;Parent=Phyra86017;rank=4 scaffold_419 . exon 33 693 . - . ID=Phyra86017.4;Parent=Phyra86017;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_419 . CDS 1018 1204 . - 0 ID=Phyra86017;Parent=Phyra86017;rank=3 scaffold_419 . exon 1018 1204 . - . ID=Phyra86017.3;Parent=Phyra86017;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_419 . CDS 1406 1621 . - 0 ID=Phyra86017;Parent=Phyra86017;rank=2 scaffold_419 . exon 1406 1621 . - . ID=Phyra86017.2;Parent=Phyra86017;constitutive=1;rank=2 scaffold_419 . CDS 1672 2553 . - 0 ID=Phyra86017;Parent=Phyra86017;rank=1 scaffold_419 . exon 1672 2553 . - . ID=Phyra86017.1;Parent=Phyra86017;constitutive=1;rank=1 scaffold_419 . repeat_region 7224 7234 . ? . description=dust scaffold_419 . repeat_region 8551 11497 . ? . description=dust scaffold_419 . repeat_region 11810 11821 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_427 1 13342 scaffold_427 . repeat_region 362 640 . + . description=GypsyPi-1c_I-int scaffold_427 . biological_region 1593 1595 0.999 + . logic_name=eponine scaffold_427 . biological_region 1684 1688 0.999 + . logic_name=eponine scaffold_427 . repeat_region 1786 2613 . ? . description=dust scaffold_427 . repeat_region 3917 4903 . ? . description=dust scaffold_427 . repeat_region 6589 7687 . ? . description=dust scaffold_427 ensembl protein_coding_gene 5138 5800 . + . ID=Phyra86032;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_427000001;logic_name=jgi_phyra1 scaffold_427 ensembl transcript 5138 5800 . + . ID=Phyra86032;Parent=Phyra86032;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_427 . CDS 5138 5800 . + 0 ID=Phyra86032;Parent=Phyra86032;rank=1 scaffold_427 . exon 5138 5800 . + . ID=Phyra86032.1;Parent=Phyra86032;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_400 1 13357 scaffold_400 . repeat_region 4405 4412 . ? . description=dust scaffold_400 . repeat_region 4933 5008 . ? . description=dust scaffold_400 . biological_region 5533 5536 0.999 - . logic_name=eponine scaffold_400 . biological_region 6105 6109 0.999 - . logic_name=eponine scaffold_400 . biological_region 6587 6591 0.999 + . logic_name=eponine scaffold_400 . biological_region 6624 6627 0.999 + . logic_name=eponine scaffold_400 ensembl protein_coding_gene 5369 6442 . + . ID=Phyra85979;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_400000001;logic_name=jgi_phyra1 scaffold_400 ensembl transcript 5369 6442 . + . ID=Phyra85979;Parent=Phyra85979;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_400 . CDS 5369 6442 . + 0 ID=Phyra85979;Parent=Phyra85979;rank=1 scaffold_400 . exon 5369 6442 . + . ID=Phyra85979.1;Parent=Phyra85979;constitutive=1;rank=1 scaffold_400 . repeat_region 7247 7951 . - . description=GypsyPi-1c_I-int scaffold_400 ensembl protein_coding_gene 6896 7684 . - . ID=Phyra85980;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_400000002;logic_name=jgi_phyra1 scaffold_400 ensembl transcript 6896 7684 . - . ID=Phyra85980;Parent=Phyra85980;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_400 . CDS 6896 7684 . - 0 ID=Phyra85980;Parent=Phyra85980;rank=1 scaffold_400 . exon 6896 7684 . - . ID=Phyra85980.1;Parent=Phyra85980;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_420 1 13377 scaffold_420 . repeat_region 67 108 . ? . description=trf scaffold_420 . repeat_region 1140 4483 . ? . description=dust scaffold_420 . biological_region 5111 5112 0.999 + . logic_name=eponine scaffold_420 . repeat_region 6371 6492 . ? . description=dust scaffold_420 ensembl protein_coding_gene 152 1018 . - . ID=Phyra86018;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_420000001;logic_name=jgi_phyra1 scaffold_420 ensembl transcript 152 1018 . - . ID=Phyra86018;Parent=Phyra86018;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_420 . CDS 152 552 . - 0 ID=Phyra86018;Parent=Phyra86018;rank=2 scaffold_420 . exon 152 552 . - . ID=Phyra86018.2;Parent=Phyra86018;constitutive=1;ensembl_phase=1;rank=2 scaffold_420 . CDS 631 1018 . - 0 ID=Phyra86018;Parent=Phyra86018;rank=1 scaffold_420 . exon 631 1018 . - . ID=Phyra86018.1;Parent=Phyra86018;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_420 ensembl protein_coding_gene 12806 13361 . + . ID=Phyra86019;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_420000002;logic_name=jgi_phyra1 scaffold_420 ensembl transcript 12806 13361 . + . ID=Phyra86019;Parent=Phyra86019;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_420 . CDS 12806 13361 . + 0 ID=Phyra86019;Parent=Phyra86019;rank=1 scaffold_420 . exon 12806 13361 . + . ID=Phyra86019.1;Parent=Phyra86019;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_421 1 13397 scaffold_421 . repeat_region 438 448 . ? . description=dust scaffold_421 . biological_region 918 919 0.999 + . logic_name=eponine scaffold_421 . biological_region 956 970 0.999 + . logic_name=eponine scaffold_421 . biological_region 1007 1017 0.999 - . logic_name=eponine scaffold_421 . biological_region 1012 1013 0.999 + . logic_name=eponine scaffold_421 . biological_region 1029 1037 0.999 + . logic_name=eponine scaffold_421 . biological_region 1055 1059 0.999 - . logic_name=eponine scaffold_421 . biological_region 1065 1070 0.999 + . logic_name=eponine scaffold_421 . biological_region 1081 1086 0.999 - . logic_name=eponine scaffold_421 . biological_region 1097 1098 0.999 - . logic_name=eponine scaffold_421 . biological_region 1104 1104 0.999 - . logic_name=eponine scaffold_421 . biological_region 1136 1140 0.999 + . logic_name=eponine scaffold_421 . repeat_region 1158 1201 . ? . description=trf scaffold_421 . biological_region 1170 1171 0.999 - . logic_name=eponine scaffold_421 . biological_region 1236 1238 0.999 - . logic_name=eponine scaffold_421 . biological_region 1697 1697 0.999 - . logic_name=eponine scaffold_421 . repeat_region 1914 1963 . ? . description=dust scaffold_421 . biological_region 2503 2504 0.999 - . logic_name=eponine scaffold_421 . repeat_region 3290 3339 . ? . description=dust scaffold_421 . repeat_region 4257 4306 . ? . description=dust scaffold_421 . repeat_region 5361 5374 . ? . description=dust scaffold_421 . repeat_region 5460 5467 . ? . description=dust scaffold_421 . repeat_region 5692 5699 . ? . description=dust scaffold_421 ensembl snRNA_gene 7 138 . + . ID=EPrPRAG00000000005;biotype=snRNA;description=U1 spliceosomal RNA [Source:RFAM%3BAcc:RF00003];external_name=U1;logic_name=ncrna_eg scaffold_421 ensembl snRNA 7 138 . + . ID=EPrPRAT00000000005;Parent=EPrPRAG00000000005;biotype=snRNA;logic_name=ncrna_eg scaffold_421 . exon 7 138 . + . ID=EPrPRAE00000000005;Parent=EPrPRAT00000000005;constitutive=1;rank=1 scaffold_421 ensembl protein_coding_gene 891 1517 . + . ID=Phyra86020;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_421000001;logic_name=jgi_phyra1 scaffold_421 ensembl transcript 891 1517 . + . ID=Phyra86020;Parent=Phyra86020;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_421 . CDS 891 1517 . + 0 ID=Phyra86020;Parent=Phyra86020;rank=1 scaffold_421 . exon 891 1517 . + . ID=Phyra86020.1;Parent=Phyra86020;constitutive=1;rank=1 scaffold_421 ensembl protein_coding_gene 1772 3284 . - . ID=Phyra86021;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_421000002;logic_name=jgi_phyra1 scaffold_421 ensembl transcript 1772 3284 . - . ID=Phyra86021;Parent=Phyra86021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_421 . CDS 1772 1783 . - 0 ID=Phyra86021;Parent=Phyra86021;rank=5 scaffold_421 . exon 1772 1783 . - . ID=Phyra86021.5;Parent=Phyra86021;constitutive=1;rank=5 scaffold_421 . CDS 1989 2096 . - 0 ID=Phyra86021;Parent=Phyra86021;rank=4 scaffold_421 . exon 1989 2096 . - . ID=Phyra86021.4;Parent=Phyra86021;constitutive=1;rank=4 scaffold_421 . CDS 2169 2669 . - 0 ID=Phyra86021;Parent=Phyra86021;rank=3 scaffold_421 . exon 2169 2669 . - . ID=Phyra86021.3;Parent=Phyra86021;constitutive=1;rank=3 scaffold_421 . CDS 2735 2932 . - 0 ID=Phyra86021;Parent=Phyra86021;rank=2 scaffold_421 . exon 2735 2932 . - . ID=Phyra86021.2;Parent=Phyra86021;constitutive=1;rank=2 scaffold_421 . CDS 3000 3284 . - 0 ID=Phyra86021;Parent=Phyra86021;rank=1 scaffold_421 . exon 3000 3284 . - . ID=Phyra86021.1;Parent=Phyra86021;constitutive=1;rank=1 scaffold_421 ensembl protein_coding_gene 9449 11634 . - . ID=Phyra86022;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_421000003;logic_name=jgi_phyra1 scaffold_421 ensembl transcript 9449 11634 . - . ID=Phyra86022;Parent=Phyra86022;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_421 . CDS 9449 10496 . - 0 ID=Phyra86022;Parent=Phyra86022;rank=3 scaffold_421 . exon 9449 10496 . - . ID=Phyra86022.3;Parent=Phyra86022;constitutive=1;ensembl_phase=2;rank=3 scaffold_421 . CDS 10571 10848 . - 0 ID=Phyra86022;Parent=Phyra86022;rank=2 scaffold_421 . exon 10571 10848 . - . ID=Phyra86022.2;Parent=Phyra86022;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_421 . CDS 11086 11634 . - 0 ID=Phyra86022;Parent=Phyra86022;rank=1 scaffold_421 . exon 11086 11634 . - . ID=Phyra86022.1;Parent=Phyra86022;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_422 1 13436 scaffold_422 . repeat_region 2279 2328 . ? . description=dust scaffold_422 . repeat_region 5079 5128 . ? . description=dust scaffold_422 . repeat_region 6209 6258 . ? . description=dust scaffold_422 ensembl protein_coding_gene 1583 1804 . - . ID=Phyra48826;biotype=protein_coding;external_name=gwEuk.422.1.1;logic_name=jgi_phyra1 scaffold_422 ensembl transcript 1583 1804 . - . ID=Phyra48826;Parent=Phyra48826;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_422 . CDS 1583 1804 . - 0 ID=Phyra48826;Parent=Phyra48826;rank=1 scaffold_422 . exon 1583 1804 . - . ID=Phyra48826.1;Parent=Phyra48826;constitutive=1;rank=1 scaffold_422 ensembl protein_coding_gene 9379 11686 . + . ID=Phyra86023;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_422000001;logic_name=jgi_phyra1 scaffold_422 ensembl transcript 9379 11686 . + . ID=Phyra86023;Parent=Phyra86023;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_422 . CDS 9379 9972 . + 0 ID=Phyra86023;Parent=Phyra86023;rank=1 scaffold_422 . exon 9379 9972 . + . ID=Phyra86023.1;Parent=Phyra86023;constitutive=1;rank=1 scaffold_422 . CDS 10373 11686 . + 0 ID=Phyra86023;Parent=Phyra86023;rank=2 scaffold_422 . exon 10373 11686 . + . ID=Phyra86023.2;Parent=Phyra86023;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_412 1 13506 scaffold_412 . repeat_region 134 1460 . - . description=GypsyPi-1c_I-int scaffold_412 . biological_region 1848 1849 0.999 + . logic_name=eponine scaffold_412 . biological_region 1933 1934 0.999 - . logic_name=eponine scaffold_412 . biological_region 1984 1990 0.999 - . logic_name=eponine scaffold_412 . biological_region 2025 2026 0.999 + . logic_name=eponine scaffold_412 . biological_region 2040 2046 0.999 + . logic_name=eponine scaffold_412 . biological_region 2063 2063 0.999 + . logic_name=eponine scaffold_412 . biological_region 2087 2092 0.999 - . logic_name=eponine scaffold_412 . biological_region 2139 2143 0.999 - . logic_name=eponine scaffold_412 . repeat_region 2531 2581 . ? . description=dust scaffold_412 . repeat_region 2596 2606 . ? . description=dust scaffold_412 . repeat_region 3228 5438 . ? . description=dust scaffold_412 . repeat_region 6223 6281 . ? . description=dust scaffold_412 . repeat_region 6302 6313 . ? . description=dust scaffold_412 . repeat_region 6445 7522 . ? . description=dust scaffold_412 ensembl protein_coding_gene 5459 6133 . + . ID=Phyra48652;biotype=protein_coding;external_name=gwEuk.412.3.1;logic_name=jgi_phyra1 scaffold_412 ensembl transcript 5459 6133 . + . ID=Phyra48652;Parent=Phyra48652;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_412 . CDS 5459 6133 . + 0 ID=Phyra48652;Parent=Phyra48652;rank=1 scaffold_412 . exon 5459 6133 . + . ID=Phyra48652.1;Parent=Phyra48652;constitutive=1;rank=1 scaffold_412 ensembl protein_coding_gene 551 1645 . - . ID=Phyra85998;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_412000001;logic_name=jgi_phyra1 scaffold_412 ensembl transcript 551 1645 . - . ID=Phyra85998;Parent=Phyra85998;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_412 . CDS 551 1645 . - 0 ID=Phyra85998;Parent=Phyra85998;rank=1 scaffold_412 . exon 551 1645 . - . ID=Phyra85998.1;Parent=Phyra85998;constitutive=1;rank=1 scaffold_412 ensembl protein_coding_gene 9205 13506 . - . ID=Phyra86000;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_412000003;logic_name=jgi_phyra1 scaffold_412 ensembl transcript 9205 13506 . - . ID=Phyra86000;Parent=Phyra86000;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_412 . CDS 9205 9213 . - 0 ID=Phyra86000;Parent=Phyra86000;rank=5 scaffold_412 . exon 9205 9213 . - . ID=Phyra86000.5;Parent=Phyra86000;constitutive=1;rank=5 scaffold_412 . CDS 10238 11664 . - 0 ID=Phyra86000;Parent=Phyra86000;rank=4 scaffold_412 . exon 10238 11664 . - . ID=Phyra86000.4;Parent=Phyra86000;constitutive=1;ensembl_phase=1;rank=4 scaffold_412 . CDS 11854 12511 . - 0 ID=Phyra86000;Parent=Phyra86000;rank=3 scaffold_412 . exon 11854 12511 . - . ID=Phyra86000.3;Parent=Phyra86000;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_412 . CDS 12635 13191 . - 0 ID=Phyra86000;Parent=Phyra86000;rank=2 scaffold_412 . exon 12635 13191 . - . ID=Phyra86000.2;Parent=Phyra86000;constitutive=1;ensembl_phase=1;rank=2 scaffold_412 . CDS 13386 13506 . - 0 ID=Phyra86000;Parent=Phyra86000;rank=1 scaffold_412 . exon 13386 13506 . - . ID=Phyra86000.1;Parent=Phyra86000;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_416 1 13539 scaffold_416 . repeat_region 1274 2334 . ? . description=dust scaffold_416 . repeat_region 4294 4749 . ? . description=dust scaffold_416 . repeat_region 5964 6909 . ? . description=dust scaffold_416 ensembl protein_coding_gene 4871 5785 . + . ID=Phyra86012;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_416000001;logic_name=jgi_phyra1 scaffold_416 ensembl transcript 4871 5785 . + . ID=Phyra86012;Parent=Phyra86012;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_416 . CDS 4871 5785 . + 0 ID=Phyra86012;Parent=Phyra86012;rank=1 scaffold_416 . exon 4871 5785 . + . ID=Phyra86012.1;Parent=Phyra86012;constitutive=1;rank=1 scaffold_416 . repeat_region 9027 9111 . ? . description=trf scaffold_416 . repeat_region 9219 9283 . ? . description=trf scaffold_416 . repeat_region 9219 9283 . ? . description=trf scaffold_416 . repeat_region 10279 10363 . ? . description=trf scaffold_416 . biological_region 12701 12705 0.999 + . logic_name=eponine scaffold_416 ensembl protein_coding_gene 10881 13539 . - . ID=Phyra86013;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_416000002;logic_name=jgi_phyra1 scaffold_416 ensembl transcript 10881 13539 . - . ID=Phyra86013;Parent=Phyra86013;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_416 . CDS 10881 13006 . - 0 ID=Phyra86013;Parent=Phyra86013;rank=2 scaffold_416 . exon 10881 13006 . - . ID=Phyra86013.2;Parent=Phyra86013;constitutive=1;ensembl_phase=1;rank=2 scaffold_416 . CDS 13074 13539 . - 0 ID=Phyra86013;Parent=Phyra86013;rank=1 scaffold_416 . exon 13074 13539 . - . ID=Phyra86013.1;Parent=Phyra86013;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_423 1 13544 scaffold_423 . repeat_region 1084 6988 . ? . description=dust scaffold_423 . biological_region 7244 7245 0.999 + . logic_name=eponine scaffold_423 . biological_region 9869 9870 0.999 - . logic_name=eponine scaffold_423 . repeat_region 13275 13316 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_418 1 13567 scaffold_418 . repeat_region 495 800 . - . description=GypsyPi-1c_LTR scaffold_418 . repeat_region 1439 4003 . ? . description=dust scaffold_418 . repeat_region 4674 4681 . ? . description=dust scaffold_418 . biological_region 4818 4820 0.999 + . logic_name=eponine scaffold_418 . repeat_region 5185 5272 . ? . description=trf scaffold_418 . repeat_region 5234 5299 . ? . description=trf scaffold_418 . repeat_region 6340 6833 . ? . description=trf scaffold_418 ensembl protein_coding_gene 12436 13146 . + . ID=Phyra86016;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_418000001;logic_name=jgi_phyra1 scaffold_418 ensembl transcript 12436 13146 . + . ID=Phyra86016;Parent=Phyra86016;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_418 . CDS 12436 13146 . + 0 ID=Phyra86016;Parent=Phyra86016;rank=1 scaffold_418 . exon 12436 13146 . + . ID=Phyra86016.1;Parent=Phyra86016;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_404 1 13597 scaffold_404 . repeat_region 5833 5858 . ? . description=trf scaffold_404 ensembl protein_coding_gene 4132 5460 . + . ID=Phyra85984;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_404000001;logic_name=jgi_phyra1 scaffold_404 ensembl transcript 4132 5460 . + . ID=Phyra85984;Parent=Phyra85984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_404 . CDS 4132 5460 . + 0 ID=Phyra85984;Parent=Phyra85984;rank=1 scaffold_404 . exon 4132 5460 . + . ID=Phyra85984.1;Parent=Phyra85984;constitutive=1;rank=1 scaffold_404 . repeat_region 8830 9393 . + . description=Gypsy-1-I_PI-int scaffold_404 . repeat_region 9500 9534 . ? . description=dust scaffold_404 . repeat_region 10268 12518 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_414 1 13610 scaffold_414 . repeat_region 1964 2013 . ? . description=dust scaffold_414 . biological_region 2252 2256 0.999 - . logic_name=eponine scaffold_414 . repeat_region 3626 3671 . ? . description=dust scaffold_414 . biological_region 5544 5545 0.999 + . logic_name=eponine scaffold_414 ensembl protein_coding_gene 1645 3117 . + . ID=Phyra86007;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_414000001;logic_name=jgi_phyra1 scaffold_414 ensembl transcript 1645 3117 . + . ID=Phyra86007;Parent=Phyra86007;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_414 . CDS 1645 1944 . + 0 ID=Phyra86007;Parent=Phyra86007;rank=1 scaffold_414 . exon 1645 1944 . + . ID=Phyra86007.1;Parent=Phyra86007;constitutive=1;rank=1 scaffold_414 . CDS 2017 3117 . + 0 ID=Phyra86007;Parent=Phyra86007;rank=2 scaffold_414 . exon 2017 3117 . + . ID=Phyra86007.2;Parent=Phyra86007;constitutive=1;rank=2 scaffold_414 ensembl protein_coding_gene 4648 6147 . - . ID=Phyra86008;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_414000002;logic_name=jgi_phyra1 scaffold_414 ensembl transcript 4648 6147 . - . ID=Phyra86008;Parent=Phyra86008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_414 . CDS 4648 6147 . - 0 ID=Phyra86008;Parent=Phyra86008;rank=1 scaffold_414 . exon 4648 6147 . - . ID=Phyra86008.1;Parent=Phyra86008;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_413 1 13630 scaffold_413 . biological_region 721 728 0.999 + . logic_name=eponine scaffold_413 . biological_region 6234 6237 0.999 + . logic_name=eponine scaffold_413 ensembl protein_coding_gene 2289 5601 . + . ID=Phyra86001;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_413000001;logic_name=jgi_phyra1 scaffold_413 ensembl transcript 2289 5601 . + . ID=Phyra86001;Parent=Phyra86001;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_413 . CDS 2289 5422 . + 0 ID=Phyra86001;Parent=Phyra86001;rank=1 scaffold_413 . exon 2289 5422 . + . ID=Phyra86001.1;Parent=Phyra86001;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_413 . CDS 5490 5601 . + 0 ID=Phyra86001;Parent=Phyra86001;rank=2 scaffold_413 . exon 5490 5601 . + . ID=Phyra86001.2;Parent=Phyra86001;constitutive=1;ensembl_phase=2;rank=2 scaffold_413 ensembl protein_coding_gene 5703 6350 . - . ID=Phyra86002;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_413000002;logic_name=jgi_phyra1 scaffold_413 ensembl transcript 5703 6350 . - . ID=Phyra86002;Parent=Phyra86002;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_413 . CDS 5703 6350 . - 0 ID=Phyra86002;Parent=Phyra86002;rank=1 scaffold_413 . exon 5703 6350 . - . ID=Phyra86002.1;Parent=Phyra86002;constitutive=1;rank=1 scaffold_413 ensembl protein_coding_gene 8338 9912 . + . ID=Phyra72392;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_413000001;logic_name=jgi_phyra1 scaffold_413 ensembl transcript 8338 9912 . + . ID=Phyra72392;Parent=Phyra72392;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_413 . CDS 8338 8724 . + 0 ID=Phyra72392;Parent=Phyra72392;rank=1 scaffold_413 . exon 8338 8724 . + . ID=Phyra72392.1;Parent=Phyra72392;constitutive=1;rank=1 scaffold_413 . CDS 8758 8771 . + 0 ID=Phyra72392;Parent=Phyra72392;rank=2 scaffold_413 . exon 8758 8771 . + . ID=Phyra72392.2;Parent=Phyra72392;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_413 . CDS 8796 9912 . + 0 ID=Phyra72392;Parent=Phyra72392;rank=3 scaffold_413 . exon 8796 9912 . + . ID=Phyra72392.3;Parent=Phyra72392;constitutive=1;ensembl_phase=2;rank=3 scaffold_413 ensembl protein_coding_gene 6877 7720 . - . ID=Phyra86003;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_413000003;logic_name=jgi_phyra1 scaffold_413 ensembl transcript 6877 7720 . - . ID=Phyra86003;Parent=Phyra86003;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_413 . CDS 6877 7437 . - 0 ID=Phyra86003;Parent=Phyra86003;rank=2 scaffold_413 . exon 6877 7437 . - . ID=Phyra86003.2;Parent=Phyra86003;constitutive=1;rank=2 scaffold_413 . CDS 7496 7720 . - 0 ID=Phyra86003;Parent=Phyra86003;rank=1 scaffold_413 . exon 7496 7720 . - . ID=Phyra86003.1;Parent=Phyra86003;constitutive=1;rank=1 scaffold_413 ensembl protein_coding_gene 10180 11552 . + . ID=Phyra86005;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_413000005;logic_name=jgi_phyra1 scaffold_413 ensembl transcript 10180 11552 . + . ID=Phyra86005;Parent=Phyra86005;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_413 . CDS 10180 10187 . + 0 ID=Phyra86005;Parent=Phyra86005;rank=1 scaffold_413 . exon 10180 10187 . + . ID=Phyra86005.1;Parent=Phyra86005;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_413 . CDS 10325 11552 . + 0 ID=Phyra86005;Parent=Phyra86005;rank=2 scaffold_413 . exon 10325 11552 . + . ID=Phyra86005.2;Parent=Phyra86005;constitutive=1;ensembl_phase=2;rank=2 scaffold_413 ensembl protein_coding_gene 12266 13630 . - . ID=Phyra86006;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_413000006;logic_name=jgi_phyra1 scaffold_413 ensembl transcript 12266 13630 . - . ID=Phyra86006;Parent=Phyra86006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_413 . CDS 12266 13630 . - 0 ID=Phyra86006;Parent=Phyra86006;rank=1 scaffold_413 . exon 12266 13630 . - . ID=Phyra86006.1;Parent=Phyra86006;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_411 1 13745 scaffold_411 . repeat_region 1323 6391 . ? . description=dust scaffold_411 . biological_region 9118 9120 0.999 - . logic_name=eponine scaffold_411 . biological_region 10416 10418 0.999 + . logic_name=eponine scaffold_411 ensembl protein_coding_gene 8310 9186 . - . ID=Phyra85995;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_411000001;logic_name=jgi_phyra1 scaffold_411 ensembl transcript 8310 9186 . - . ID=Phyra85995;Parent=Phyra85995;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_411 . CDS 8310 8569 . - 0 ID=Phyra85995;Parent=Phyra85995;rank=3 scaffold_411 . exon 8310 8569 . - . ID=Phyra85995.3;Parent=Phyra85995;constitutive=1;ensembl_phase=1;rank=3 scaffold_411 . CDS 8697 8766 . - 0 ID=Phyra85995;Parent=Phyra85995;rank=2 scaffold_411 . exon 8697 8766 . - . ID=Phyra85995.2;Parent=Phyra85995;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_411 . CDS 8941 9186 . - 0 ID=Phyra85995;Parent=Phyra85995;rank=1 scaffold_411 . exon 8941 9186 . - . ID=Phyra85995.1;Parent=Phyra85995;constitutive=1;rank=1 scaffold_411 ensembl protein_coding_gene 10349 11374 . + . ID=Phyra85996;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_411000002;logic_name=jgi_phyra1 scaffold_411 ensembl transcript 10349 11374 . + . ID=Phyra85996;Parent=Phyra85996;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_411 . CDS 10349 10594 . + 0 ID=Phyra85996;Parent=Phyra85996;rank=1 scaffold_411 . exon 10349 10594 . + . ID=Phyra85996.1;Parent=Phyra85996;constitutive=1;rank=1 scaffold_411 . CDS 10769 10838 . + 0 ID=Phyra85996;Parent=Phyra85996;rank=2 scaffold_411 . exon 10769 10838 . + . ID=Phyra85996.2;Parent=Phyra85996;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_411 . CDS 10966 11149 . + 0 ID=Phyra85996;Parent=Phyra85996;rank=3 scaffold_411 . exon 10966 11149 . + . ID=Phyra85996.3;Parent=Phyra85996;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_411 . CDS 11332 11374 . + 0 ID=Phyra85996;Parent=Phyra85996;rank=4 scaffold_411 . exon 11332 11374 . + . ID=Phyra85996.4;Parent=Phyra85996;constitutive=1;ensembl_phase=2;rank=4 scaffold_411 ensembl protein_coding_gene 11738 12349 . - . ID=Phyra85997;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_411000003;logic_name=jgi_phyra1 scaffold_411 ensembl transcript 11738 12349 . - . ID=Phyra85997;Parent=Phyra85997;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_411 . CDS 11738 12349 . - 0 ID=Phyra85997;Parent=Phyra85997;rank=1 scaffold_411 . exon 11738 12349 . - . ID=Phyra85997.1;Parent=Phyra85997;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_407 1 13753 scaffold_407 . repeat_region 2482 2491 . ? . description=dust scaffold_407 ensembl protein_coding_gene 570 3902 . + . ID=Phyra85988;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_407000001;logic_name=jgi_phyra1 scaffold_407 ensembl transcript 570 3902 . + . ID=Phyra85988;Parent=Phyra85988;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_407 . CDS 570 750 . + 0 ID=Phyra85988;Parent=Phyra85988;rank=1 scaffold_407 . exon 570 750 . + . ID=Phyra85988.1;Parent=Phyra85988;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_407 . CDS 806 871 . + 0 ID=Phyra85988;Parent=Phyra85988;rank=2 scaffold_407 . exon 806 871 . + . ID=Phyra85988.2;Parent=Phyra85988;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_407 . CDS 942 1127 . + 0 ID=Phyra85988;Parent=Phyra85988;rank=3 scaffold_407 . exon 942 1127 . + . ID=Phyra85988.3;Parent=Phyra85988;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_407 . CDS 1197 1361 . + 0 ID=Phyra85988;Parent=Phyra85988;rank=4 scaffold_407 . exon 1197 1361 . + . ID=Phyra85988.4;Parent=Phyra85988;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_407 . CDS 1433 1706 . + 0 ID=Phyra85988;Parent=Phyra85988;rank=5 scaffold_407 . exon 1433 1706 . + . ID=Phyra85988.5;Parent=Phyra85988;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_407 . CDS 1943 2449 . + 0 ID=Phyra85988;Parent=Phyra85988;rank=6 scaffold_407 . exon 1943 2449 . + . ID=Phyra85988.6;Parent=Phyra85988;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_407 . CDS 2555 2654 . + 0 ID=Phyra85988;Parent=Phyra85988;rank=7 scaffold_407 . exon 2555 2654 . + . ID=Phyra85988.7;Parent=Phyra85988;constitutive=1;ensembl_phase=2;rank=7 scaffold_407 . CDS 2916 3002 . + 0 ID=Phyra85988;Parent=Phyra85988;rank=8 scaffold_407 . exon 2916 3002 . + . ID=Phyra85988.8;Parent=Phyra85988;constitutive=1;rank=8 scaffold_407 . CDS 3072 3118 . + 0 ID=Phyra85988;Parent=Phyra85988;rank=9 scaffold_407 . exon 3072 3118 . + . ID=Phyra85988.9;Parent=Phyra85988;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_407 . CDS 3174 3303 . + 0 ID=Phyra85988;Parent=Phyra85988;rank=10 scaffold_407 . exon 3174 3303 . + . ID=Phyra85988.10;Parent=Phyra85988;constitutive=1;ensembl_phase=2;rank=10 scaffold_407 . CDS 3696 3902 . + 0 ID=Phyra85988;Parent=Phyra85988;rank=11 scaffold_407 . exon 3696 3902 . + . ID=Phyra85988.11;Parent=Phyra85988;constitutive=1;rank=11 scaffold_407 ensembl protein_coding_gene 6649 7155 . + . ID=Phyra85989;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_407000002;logic_name=jgi_phyra1 scaffold_407 ensembl transcript 6649 7155 . + . ID=Phyra85989;Parent=Phyra85989;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_407 . CDS 6649 7155 . + 0 ID=Phyra85989;Parent=Phyra85989;rank=1 scaffold_407 . exon 6649 7155 . + . ID=Phyra85989.1;Parent=Phyra85989;constitutive=1;rank=1 scaffold_407 . biological_region 12187 12192 0.999 - . logic_name=eponine scaffold_407 . biological_region 12242 12249 0.999 + . logic_name=eponine scaffold_407 . biological_region 12255 12260 0.999 - . logic_name=eponine scaffold_407 ensembl protein_coding_gene 7359 8072 . - . ID=Phyra72390;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_407000001;logic_name=jgi_phyra1 scaffold_407 ensembl transcript 7359 8072 . - . ID=Phyra72390;Parent=Phyra72390;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_407 . CDS 7359 8072 . - 0 ID=Phyra72390;Parent=Phyra72390;rank=1 scaffold_407 . exon 7359 8072 . - . ID=Phyra72390.1;Parent=Phyra72390;constitutive=1;rank=1 scaffold_407 ensembl protein_coding_gene 8778 10871 . - . ID=Phyra85991;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_407000004;logic_name=jgi_phyra1 scaffold_407 ensembl transcript 8778 10871 . - . ID=Phyra85991;Parent=Phyra85991;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_407 . CDS 8778 10871 . - 0 ID=Phyra85991;Parent=Phyra85991;rank=1 scaffold_407 . exon 8778 10871 . - . ID=Phyra85991.1;Parent=Phyra85991;constitutive=1;rank=1 scaffold_407 ensembl protein_coding_gene 13033 13707 . - . ID=Phyra85992;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_407000005;logic_name=jgi_phyra1 scaffold_407 ensembl transcript 13033 13707 . - . ID=Phyra85992;Parent=Phyra85992;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_407 . CDS 13033 13707 . - 0 ID=Phyra85992;Parent=Phyra85992;rank=1 scaffold_407 . exon 13033 13707 . - . ID=Phyra85992.1;Parent=Phyra85992;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_408 1 13753 scaffold_408 . repeat_region 1932 5333 . ? . description=dust scaffold_408 . repeat_region 6539 6562 . ? . description=trf scaffold_408 ensembl protein_coding_gene 13042 13353 . - . ID=Phyra48557;biotype=protein_coding;external_name=gwEuk.408.1.1;logic_name=jgi_phyra1 scaffold_408 ensembl transcript 13042 13353 . - . ID=Phyra48557;Parent=Phyra48557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_408 . CDS 13042 13353 . - 0 ID=Phyra48557;Parent=Phyra48557;rank=1 scaffold_408 . exon 13042 13353 . - . ID=Phyra48557.1;Parent=Phyra48557;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_409 1 13762 scaffold_409 . repeat_region 3069 3076 . ? . description=dust scaffold_409 . repeat_region 3685 3692 . ? . description=dust scaffold_409 . repeat_region 5106 5307 . ? . description=trf scaffold_409 ensembl protein_coding_gene 12829 13748 . - . ID=Phyra85993;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_409000001;logic_name=jgi_phyra1 scaffold_409 ensembl transcript 12829 13748 . - . ID=Phyra85993;Parent=Phyra85993;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_409 . CDS 12829 12892 . - 0 ID=Phyra85993;Parent=Phyra85993;rank=2 scaffold_409 . exon 12829 12892 . - . ID=Phyra85993.2;Parent=Phyra85993;constitutive=1;ensembl_phase=2;rank=2 scaffold_409 . CDS 12928 13748 . - 0 ID=Phyra85993;Parent=Phyra85993;rank=1 scaffold_409 . exon 12928 13748 . - . ID=Phyra85993.1;Parent=Phyra85993;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_405 1 13773 scaffold_405 . repeat_region 1111 1128 . ? . description=dust scaffold_405 . repeat_region 4164 4178 . ? . description=dust scaffold_405 ensembl protein_coding_gene 6870 7927 . - . ID=Phyra85985;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_405000001;logic_name=jgi_phyra1 scaffold_405 ensembl transcript 6870 7927 . - . ID=Phyra85985;Parent=Phyra85985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_405 . CDS 6870 6934 . - 0 ID=Phyra85985;Parent=Phyra85985;rank=4 scaffold_405 . exon 6870 6934 . - . ID=Phyra85985.4;Parent=Phyra85985;constitutive=1;ensembl_phase=1;rank=4 scaffold_405 . CDS 6992 7195 . - 0 ID=Phyra85985;Parent=Phyra85985;rank=3 scaffold_405 . CDS 7417 7606 . - 0 ID=Phyra85985;Parent=Phyra85985;rank=2 scaffold_405 . CDS 7805 7927 . - 0 ID=Phyra85985;Parent=Phyra85985;rank=1 scaffold_405 . biological_region 12985 12987 0.999 + . logic_name=eponine scaffold_405 . biological_region 13309 13310 0.999 + . logic_name=eponine scaffold_405 . exon 6992 7195 . - . ID=Phyra85985.3;Parent=Phyra85985;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_405 . exon 7417 7606 . - . ID=Phyra85985.2;Parent=Phyra85985;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_405 . exon 7805 7927 . - . ID=Phyra85985.1;Parent=Phyra85985;constitutive=1;rank=1 scaffold_405 ensembl protein_coding_gene 11728 13443 . - . ID=Phyra85986;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_405000002;logic_name=jgi_phyra1 scaffold_405 ensembl transcript 11728 13443 . - . ID=Phyra85986;Parent=Phyra85986;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_405 . CDS 11728 13443 . - 0 ID=Phyra85986;Parent=Phyra85986;rank=1 scaffold_405 . exon 11728 13443 . - . ID=Phyra85986.1;Parent=Phyra85986;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_410 1 13798 scaffold_410 . repeat_region 2009 7120 . ? . description=dust scaffold_410 . biological_region 7226 7226 0.999 - . logic_name=eponine scaffold_410 ensembl protein_coding_gene 8458 11210 . - . ID=Phyra85994;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_410000001;logic_name=jgi_phyra1 scaffold_410 ensembl transcript 8458 11210 . - . ID=Phyra85994;Parent=Phyra85994;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_410 . CDS 8458 9580 . - 0 ID=Phyra85994;Parent=Phyra85994;rank=2 scaffold_410 . exon 8458 9580 . - . ID=Phyra85994.2;Parent=Phyra85994;constitutive=1;ensembl_phase=2;rank=2 scaffold_410 . CDS 10174 11210 . - 0 ID=Phyra85994;Parent=Phyra85994;rank=1 scaffold_410 . exon 10174 11210 . - . ID=Phyra85994.1;Parent=Phyra85994;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_403 1 13864 scaffold_403 ensembl protein_coding_gene 1214 3057 . - . ID=Phyra85982;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_403000001;logic_name=jgi_phyra1 scaffold_403 ensembl transcript 1214 3057 . - . ID=Phyra85982;Parent=Phyra85982;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_403 . CDS 1214 1257 . - 0 ID=Phyra85982;Parent=Phyra85982;rank=3 scaffold_403 . exon 1214 1257 . - . ID=Phyra85982.3;Parent=Phyra85982;constitutive=1;ensembl_phase=1;rank=3 scaffold_403 . CDS 1353 1556 . - 0 ID=Phyra85982;Parent=Phyra85982;rank=2 scaffold_403 . exon 1353 1556 . - . ID=Phyra85982.2;Parent=Phyra85982;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_403 . CDS 1647 3057 . - 0 ID=Phyra85982;Parent=Phyra85982;rank=1 scaffold_403 . exon 1647 3057 . - . ID=Phyra85982.1;Parent=Phyra85982;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_403 ensembl protein_coding_gene 3219 4157 . - . ID=Phyra85983;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_403000002;logic_name=jgi_phyra1 scaffold_403 ensembl transcript 3219 4157 . - . ID=Phyra85983;Parent=Phyra85983;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_403 . CDS 3219 4157 . - 0 ID=Phyra85983;Parent=Phyra85983;rank=1 scaffold_403 . exon 3219 4157 . - . ID=Phyra85983.1;Parent=Phyra85983;constitutive=1;rank=1 scaffold_403 . biological_region 9735 9736 0.999 + . logic_name=eponine scaffold_403 . repeat_region 13194 13406 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_402 1 13896 scaffold_402 . repeat_region 51 99 . ? . description=trf scaffold_402 . repeat_region 51 99 . ? . description=dust scaffold_402 . repeat_region 1049 2815 . ? . description=dust scaffold_402 . repeat_region 3904 4456 . ? . description=dust scaffold_402 . biological_region 10771 10773 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_406 1 13955 scaffold_406 . repeat_region 1591 1599 . ? . description=dust scaffold_406 . repeat_region 4332 8719 . ? . description=dust scaffold_406 ensembl protein_coding_gene 364 1374 . + . ID=Phyra85987;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_406000001;logic_name=jgi_phyra1 scaffold_406 ensembl transcript 364 1374 . + . ID=Phyra85987;Parent=Phyra85987;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_406 . CDS 364 1374 . + 0 ID=Phyra85987;Parent=Phyra85987;rank=1 scaffold_406 . exon 364 1374 . + . ID=Phyra85987.1;Parent=Phyra85987;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_401 1 13996 scaffold_401 . repeat_region 817 5594 . ? . description=dust scaffold_401 . biological_region 6440 6440 0.999 + . logic_name=eponine scaffold_401 . repeat_region 6644 6672 . ? . description=trf scaffold_401 ensembl protein_coding_gene 6231 13943 . - . ID=Phyra85981;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_401000001;logic_name=jgi_phyra1 scaffold_401 ensembl transcript 6231 13943 . - . ID=Phyra85981;Parent=Phyra85981;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_401 . CDS 6231 6314 . - 0 ID=Phyra85981;Parent=Phyra85981;rank=5 scaffold_401 . exon 6231 6314 . - . ID=Phyra85981.5;Parent=Phyra85981;constitutive=1;rank=5 scaffold_401 . CDS 6437 6748 . - 0 ID=Phyra85981;Parent=Phyra85981;rank=4 scaffold_401 . exon 6437 6748 . - . ID=Phyra85981.4;Parent=Phyra85981;constitutive=1;rank=4 scaffold_401 . CDS 7018 7071 . - 0 ID=Phyra85981;Parent=Phyra85981;rank=3 scaffold_401 . CDS 12430 12617 . - 0 ID=Phyra85981;Parent=Phyra85981;rank=2 scaffold_401 . CDS 12693 13941 . - 0 ID=Phyra85981;Parent=Phyra85981;rank=1 scaffold_401 . exon 7018 7071 . - . ID=Phyra85981.3;Parent=Phyra85981;constitutive=1;rank=3 scaffold_401 . exon 12430 12617 . - . ID=Phyra85981.2;Parent=Phyra85981;constitutive=1;ensembl_phase=1;rank=2 scaffold_401 . exon 12693 13943 . - . ID=Phyra85981.1;Parent=Phyra85981;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_417 1 14091 scaffold_417 . repeat_region 1256 5112 . ? . description=dust scaffold_417 . repeat_region 6910 6959 . ? . description=dust scaffold_417 . biological_region 9181 9182 0.999 - . logic_name=eponine scaffold_417 ensembl protein_coding_gene 12865 13767 . - . ID=Phyra72394;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_417000001;logic_name=jgi_phyra1 scaffold_417 ensembl transcript 12865 13767 . - . ID=Phyra72394;Parent=Phyra72394;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_417 . CDS 12865 13767 . - 0 ID=Phyra72394;Parent=Phyra72394;rank=1 scaffold_417 . exon 12865 13767 . - . ID=Phyra72394.1;Parent=Phyra72394;constitutive=1;rank=1 scaffold_417 ensembl protein_coding_gene 9288 10360 . + . ID=Phyra86014;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_417000001;logic_name=jgi_phyra1 scaffold_417 ensembl transcript 9288 10360 . + . ID=Phyra86014;Parent=Phyra86014;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_417 . CDS 9288 10278 . + 0 ID=Phyra86014;Parent=Phyra86014;rank=1 scaffold_417 . exon 9288 10278 . + . ID=Phyra86014.1;Parent=Phyra86014;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_417 . CDS 10323 10360 . + 0 ID=Phyra86014;Parent=Phyra86014;rank=2 scaffold_417 . exon 10323 10360 . + . ID=Phyra86014.2;Parent=Phyra86014;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_393 1 14092 scaffold_393 . repeat_region 965 3641 . ? . description=dust scaffold_393 . repeat_region 5575 5657 . - . description=Polinton-1_PI scaffold_393 . repeat_region 5660 5788 . ? . description=dust scaffold_393 . repeat_region 5859 8012 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_395 1 14098 scaffold_395 . repeat_region 1090 6960 . ? . description=dust scaffold_395 . biological_region 12448 12450 0.999 - . logic_name=eponine scaffold_395 . biological_region 12907 12911 0.999 - . logic_name=eponine scaffold_395 ensembl protein_coding_gene 12041 14021 . - . ID=Phyra85967;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_395000001;logic_name=jgi_phyra1 scaffold_395 ensembl transcript 12041 14021 . - . ID=Phyra85967;Parent=Phyra85967;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_395 . CDS 12041 12079 . - 0 ID=Phyra85967;Parent=Phyra85967;rank=3 scaffold_395 . exon 12041 12079 . - . ID=Phyra85967.3;Parent=Phyra85967;constitutive=1;rank=3 scaffold_395 . CDS 12142 13206 . - 0 ID=Phyra85967;Parent=Phyra85967;rank=2 scaffold_395 . exon 12142 13206 . - . ID=Phyra85967.2;Parent=Phyra85967;constitutive=1;rank=2 scaffold_395 . CDS 13818 14021 . - 0 ID=Phyra85967;Parent=Phyra85967;rank=1 scaffold_395 . exon 13818 14021 . - . ID=Phyra85967.1;Parent=Phyra85967;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_398 1 14106 scaffold_398 . biological_region 3985 3988 0.999 + . logic_name=eponine scaffold_398 . biological_region 6438 6438 0.999 + . logic_name=eponine scaffold_398 ensembl protein_coding_gene 3157 4605 . + . ID=Phyra85974;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_398000001;logic_name=jgi_phyra1 scaffold_398 ensembl transcript 3157 4605 . + . ID=Phyra85974;Parent=Phyra85974;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_398 . CDS 3157 3611 . + 0 ID=Phyra85974;Parent=Phyra85974;rank=1 scaffold_398 . exon 3157 3611 . + . ID=Phyra85974.1;Parent=Phyra85974;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_398 . CDS 3683 4432 . + 0 ID=Phyra85974;Parent=Phyra85974;rank=2 scaffold_398 . exon 3683 4432 . + . ID=Phyra85974.2;Parent=Phyra85974;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_398 . CDS 4509 4605 . + 0 ID=Phyra85974;Parent=Phyra85974;rank=3 scaffold_398 . exon 4509 4605 . + . ID=Phyra85974.3;Parent=Phyra85974;constitutive=1;ensembl_phase=2;rank=3 scaffold_398 ensembl protein_coding_gene 5229 6646 . - . ID=Phyra97184;biotype=protein_coding;external_name=C_scaffold_398000002;logic_name=jgi_phyra1 scaffold_398 ensembl transcript 5229 6646 . - . ID=Phyra97184;Parent=Phyra97184;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_398 . CDS 5229 5237 . - 0 ID=Phyra97184;Parent=Phyra97184;rank=4 scaffold_398 . exon 5229 5237 . - . ID=Phyra97184.4;Parent=Phyra97184;constitutive=1;rank=4 scaffold_398 . CDS 5261 5466 . - 0 ID=Phyra97184;Parent=Phyra97184;rank=3 scaffold_398 . exon 5261 5466 . - . ID=Phyra97184.3;Parent=Phyra97184;constitutive=1;ensembl_phase=1;rank=3 scaffold_398 . CDS 5587 5845 . - 0 ID=Phyra97184;Parent=Phyra97184;rank=2 scaffold_398 . exon 5587 5845 . - . ID=Phyra97184.2;Parent=Phyra97184;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_398 . CDS 5957 6646 . - 0 ID=Phyra97184;Parent=Phyra97184;rank=1 scaffold_398 . exon 5957 6646 . - . ID=Phyra97184.1;Parent=Phyra97184;constitutive=1;rank=1 scaffold_398 . repeat_region 10099 10148 . ? . description=dust scaffold_398 . repeat_region 12029 12096 . ? . description=trf scaffold_398 . repeat_region 12200 12297 . ? . description=trf scaffold_398 . repeat_region 12225 12288 . ? . description=dust scaffold_398 . repeat_region 12243 12283 . ? . description=trf scaffold_398 . repeat_region 12405 12469 . ? . description=trf scaffold_398 . repeat_region 12412 12501 . ? . description=trf scaffold_398 ensembl protein_coding_gene 10151 10708 . - . ID=Phyra48352;biotype=protein_coding;external_name=gwEuk.398.6.1;logic_name=jgi_phyra1 scaffold_398 ensembl transcript 10151 10708 . - . ID=Phyra48352;Parent=Phyra48352;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_398 . CDS 10151 10708 . - 0 ID=Phyra48352;Parent=Phyra48352;rank=1 scaffold_398 . exon 10151 10708 . - . ID=Phyra48352.1;Parent=Phyra48352;constitutive=1;rank=1 scaffold_398 ensembl protein_coding_gene 11069 11352 . - . ID=Phyra48360;biotype=protein_coding;external_name=gwEuk.398.14.1;logic_name=jgi_phyra1 scaffold_398 ensembl transcript 11069 11352 . - . ID=Phyra48360;Parent=Phyra48360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_398 . CDS 11069 11113 . - 0 ID=Phyra48360;Parent=Phyra48360;rank=2 scaffold_398 . exon 11069 11113 . - . ID=Phyra48360.2;Parent=Phyra48360;constitutive=1;rank=2 scaffold_398 . CDS 11191 11352 . - 0 ID=Phyra48360;Parent=Phyra48360;rank=1 scaffold_398 . exon 11191 11352 . - . ID=Phyra48360.1;Parent=Phyra48360;constitutive=1;rank=1 scaffold_398 ensembl protein_coding_gene 7389 9638 . + . ID=Phyra85976;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_398000003;logic_name=jgi_phyra1 scaffold_398 ensembl transcript 7389 9638 . + . ID=Phyra85976;Parent=Phyra85976;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_398 . CDS 7389 9417 . + 0 ID=Phyra85976;Parent=Phyra85976;rank=1 scaffold_398 . exon 7389 9417 . + . ID=Phyra85976.1;Parent=Phyra85976;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_398 . CDS 9628 9638 . + 0 ID=Phyra85976;Parent=Phyra85976;rank=2 scaffold_398 . exon 9628 9638 . + . ID=Phyra85976.2;Parent=Phyra85976;constitutive=1;ensembl_phase=1;rank=2 scaffold_398 ensembl protein_coding_gene 11877 12704 . - . ID=Phyra85978;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_398000005;logic_name=jgi_phyra1 scaffold_398 ensembl transcript 11877 12704 . - . ID=Phyra85978;Parent=Phyra85978;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_398 . CDS 11877 12704 . - 0 ID=Phyra85978;Parent=Phyra85978;rank=1 scaffold_398 . exon 11877 12704 . - . ID=Phyra85978.1;Parent=Phyra85978;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_397 1 14120 scaffold_397 . biological_region 2414 2416 0.999 - . logic_name=eponine scaffold_397 . repeat_region 2899 2907 . ? . description=dust scaffold_397 . repeat_region 3248 3294 . ? . description=trf scaffold_397 . biological_region 3401 3405 0.999 - . logic_name=eponine scaffold_397 . biological_region 3420 3422 0.999 - . logic_name=eponine scaffold_397 . biological_region 5232 5234 0.999 + . logic_name=eponine scaffold_397 . repeat_region 5835 6260 . ? . description=trf scaffold_397 . repeat_region 5835 6419 . ? . description=trf scaffold_397 . repeat_region 5841 6419 . ? . description=trf scaffold_397 . repeat_region 6463 6691 . ? . description=trf scaffold_397 ensembl protein_coding_gene 101 2379 . + . ID=Phyra85971;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_397000001;logic_name=jgi_phyra1 scaffold_397 ensembl transcript 101 2379 . + . ID=Phyra85971;Parent=Phyra85971;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_397 . CDS 101 121 . + 0 ID=Phyra85971;Parent=Phyra85971;rank=1 scaffold_397 . exon 101 121 . + . ID=Phyra85971.1;Parent=Phyra85971;constitutive=1;rank=1 scaffold_397 . CDS 163 2379 . + 0 ID=Phyra85971;Parent=Phyra85971;rank=2 scaffold_397 . exon 163 2379 . + . ID=Phyra85971.2;Parent=Phyra85971;constitutive=1;rank=2 scaffold_397 ensembl protein_coding_gene 2822 7115 . - . ID=Phyra85972;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_397000002;logic_name=jgi_phyra1 scaffold_397 ensembl transcript 2822 7115 . - . ID=Phyra85972;Parent=Phyra85972;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_397 . CDS 2822 2865 . - 0 ID=Phyra85972;Parent=Phyra85972;rank=6 scaffold_397 . exon 2822 2865 . - . ID=Phyra85972.6;Parent=Phyra85972;constitutive=1;ensembl_phase=1;rank=6 scaffold_397 . CDS 2932 3004 . - 0 ID=Phyra85972;Parent=Phyra85972;rank=5 scaffold_397 . exon 2932 3004 . - . ID=Phyra85972.5;Parent=Phyra85972;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_397 . CDS 3068 3416 . - 0 ID=Phyra85972;Parent=Phyra85972;rank=4 scaffold_397 . exon 3068 3416 . - . ID=Phyra85972.4;Parent=Phyra85972;constitutive=1;ensembl_phase=2;rank=4 scaffold_397 . CDS 3649 4283 . - 0 ID=Phyra85972;Parent=Phyra85972;rank=3 scaffold_397 . exon 3649 4283 . - . ID=Phyra85972.3;Parent=Phyra85972;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_397 . CDS 4355 5423 . - 0 ID=Phyra85972;Parent=Phyra85972;rank=2 scaffold_397 . exon 4355 5423 . - . ID=Phyra85972.2;Parent=Phyra85972;constitutive=1;ensembl_phase=2;rank=2 scaffold_397 . CDS 6139 7115 . - 0 ID=Phyra85972;Parent=Phyra85972;rank=1 scaffold_397 . exon 6139 7115 . - . ID=Phyra85972.1;Parent=Phyra85972;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_397 ensembl protein_coding_gene 9565 13132 . + . ID=Phyra85973;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_397000003;logic_name=jgi_phyra1 scaffold_397 ensembl transcript 9565 13132 . + . ID=Phyra85973;Parent=Phyra85973;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_397 . CDS 9565 13035 . + 0 ID=Phyra85973;Parent=Phyra85973;rank=1 scaffold_397 . exon 9565 13035 . + . ID=Phyra85973.1;Parent=Phyra85973;constitutive=1;rank=1 scaffold_397 . CDS 13130 13132 . + 0 ID=Phyra85973;Parent=Phyra85973;rank=2 scaffold_397 . exon 13130 13132 . + . ID=Phyra85973.2;Parent=Phyra85973;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_394 1 14122 scaffold_394 . biological_region 2510 2513 0.999 + . logic_name=eponine scaffold_394 . biological_region 2539 2544 0.999 + . logic_name=eponine scaffold_394 . biological_region 2560 2564 0.999 + . logic_name=eponine scaffold_394 . biological_region 2584 2589 0.999 + . logic_name=eponine scaffold_394 . biological_region 2620 2621 0.999 + . logic_name=eponine scaffold_394 . biological_region 3086 3091 0.999 - . logic_name=eponine scaffold_394 . biological_region 4169 4169 0.999 - . logic_name=eponine scaffold_394 ensembl protein_coding_gene 6786 7841 . - . ID=Phyra48345;biotype=protein_coding;external_name=gwEuk.394.2.1;logic_name=jgi_phyra1 scaffold_394 ensembl transcript 6786 7841 . - . ID=Phyra48345;Parent=Phyra48345;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_394 . CDS 6786 7841 . - 0 ID=Phyra48345;Parent=Phyra48345;rank=1 scaffold_394 . exon 6786 7841 . - . ID=Phyra48345.1;Parent=Phyra48345;constitutive=1;rank=1 scaffold_394 ensembl protein_coding_gene 380 2767 . - . ID=Phyra85960;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_394000001;logic_name=jgi_phyra1 scaffold_394 ensembl transcript 380 2767 . - . ID=Phyra85960;Parent=Phyra85960;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_394 . CDS 380 2767 . - 0 ID=Phyra85960;Parent=Phyra85960;rank=1 scaffold_394 . exon 380 2767 . - . ID=Phyra85960.1;Parent=Phyra85960;constitutive=1;rank=1 scaffold_394 ensembl protein_coding_gene 4005 4637 . - . ID=Phyra85961;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_394000002;logic_name=jgi_phyra1 scaffold_394 ensembl transcript 4005 4637 . - . ID=Phyra85961;Parent=Phyra85961;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_394 . CDS 4005 4637 . - 0 ID=Phyra85961;Parent=Phyra85961;rank=1 scaffold_394 . exon 4005 4637 . - . ID=Phyra85961.1;Parent=Phyra85961;constitutive=1;rank=1 scaffold_394 ensembl protein_coding_gene 5008 5841 . + . ID=Phyra85962;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_394000003;logic_name=jgi_phyra1 scaffold_394 ensembl transcript 5008 5841 . + . ID=Phyra85962;Parent=Phyra85962;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_394 . CDS 5008 5841 . + 0 ID=Phyra85962;Parent=Phyra85962;rank=1 scaffold_394 . exon 5008 5841 . + . ID=Phyra85962.1;Parent=Phyra85962;constitutive=1;rank=1 scaffold_394 ensembl protein_coding_gene 9723 11184 . - . ID=Phyra85964;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_394000005;logic_name=jgi_phyra1 scaffold_394 ensembl transcript 9723 11184 . - . ID=Phyra85964;Parent=Phyra85964;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_394 . CDS 9723 9746 . - 0 ID=Phyra85964;Parent=Phyra85964;rank=4 scaffold_394 . exon 9723 9746 . - . ID=Phyra85964.4;Parent=Phyra85964;constitutive=1;rank=4 scaffold_394 . CDS 9869 9977 . - 0 ID=Phyra85964;Parent=Phyra85964;rank=3 scaffold_394 . exon 9869 9977 . - . ID=Phyra85964.3;Parent=Phyra85964;constitutive=1;ensembl_phase=2;rank=3 scaffold_394 . CDS 10038 10833 . - 0 ID=Phyra85964;Parent=Phyra85964;rank=2 scaffold_394 . exon 10038 10833 . - . ID=Phyra85964.2;Parent=Phyra85964;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_394 . CDS 10887 11184 . - 0 ID=Phyra85964;Parent=Phyra85964;rank=1 scaffold_394 . exon 10887 11184 . - . ID=Phyra85964.1;Parent=Phyra85964;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_394 ensembl protein_coding_gene 11627 13090 . + . ID=Phyra85965;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_394000006;logic_name=jgi_phyra1 scaffold_394 ensembl transcript 11627 13090 . + . ID=Phyra85965;Parent=Phyra85965;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_394 . CDS 11627 13090 . + 0 ID=Phyra85965;Parent=Phyra85965;rank=1 scaffold_394 . exon 11627 13090 . + . ID=Phyra85965.1;Parent=Phyra85965;constitutive=1;rank=1 scaffold_394 ensembl protein_coding_gene 13496 13816 . - . ID=Phyra85966;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_394000007;logic_name=jgi_phyra1 scaffold_394 ensembl transcript 13496 13816 . - . ID=Phyra85966;Parent=Phyra85966;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_394 . CDS 13496 13816 . - 0 ID=Phyra85966;Parent=Phyra85966;rank=1 scaffold_394 . exon 13496 13816 . - . ID=Phyra85966.1;Parent=Phyra85966;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_396 1 14179 scaffold_396 . repeat_region 1972 1986 . ? . description=dust scaffold_396 . repeat_region 2722 2818 . ? . description=trf scaffold_396 . repeat_region 2739 2882 . ? . description=trf scaffold_396 . repeat_region 2799 2836 . ? . description=trf scaffold_396 . repeat_region 3315 3360 . ? . description=trf scaffold_396 . repeat_region 3683 3732 . ? . description=dust scaffold_396 . biological_region 3955 3962 0.999 + . logic_name=eponine scaffold_396 . biological_region 4743 4747 0.999 + . logic_name=eponine scaffold_396 . biological_region 5178 5183 0.999 - . logic_name=eponine scaffold_396 ensembl protein_coding_gene 2574 3377 . + . ID=Phyra85968;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_396000001;logic_name=jgi_phyra1 scaffold_396 ensembl transcript 2574 3377 . + . ID=Phyra85968;Parent=Phyra85968;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_396 . CDS 2574 3377 . + 0 ID=Phyra85968;Parent=Phyra85968;rank=1 scaffold_396 . exon 2574 3377 . + . ID=Phyra85968.1;Parent=Phyra85968;constitutive=1;rank=1 scaffold_396 ensembl protein_coding_gene 3862 5391 . - . ID=Phyra85969;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_396000002;logic_name=jgi_phyra1 scaffold_396 ensembl transcript 3862 5391 . - . ID=Phyra85969;Parent=Phyra85969;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_396 . CDS 3862 4141 . - 0 ID=Phyra85969;Parent=Phyra85969;rank=5 scaffold_396 . exon 3862 4141 . - . ID=Phyra85969.5;Parent=Phyra85969;constitutive=1;ensembl_phase=2;rank=5 scaffold_396 . CDS 4191 4438 . - 0 ID=Phyra85969;Parent=Phyra85969;rank=4 scaffold_396 . exon 4191 4438 . - . ID=Phyra85969.4;Parent=Phyra85969;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_396 . CDS 4751 4835 . - 0 ID=Phyra85969;Parent=Phyra85969;rank=3 scaffold_396 . exon 4751 4835 . - . ID=Phyra85969.3;Parent=Phyra85969;constitutive=1;ensembl_phase=2;rank=3 scaffold_396 . CDS 4976 5142 . - 0 ID=Phyra85969;Parent=Phyra85969;rank=2 scaffold_396 . exon 4976 5142 . - . ID=Phyra85969.2;Parent=Phyra85969;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_396 . CDS 5221 5391 . - 0 ID=Phyra85969;Parent=Phyra85969;rank=1 scaffold_396 . exon 5221 5391 . - . ID=Phyra85969.1;Parent=Phyra85969;constitutive=1;rank=1 scaffold_396 ensembl protein_coding_gene 7110 9861 . + . ID=Phyra85970;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_396000003;logic_name=jgi_phyra1 scaffold_396 ensembl transcript 7110 9861 . + . ID=Phyra85970;Parent=Phyra85970;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_396 . CDS 7110 7607 . + 0 ID=Phyra85970;Parent=Phyra85970;rank=1 scaffold_396 . exon 7110 7607 . + . ID=Phyra85970.1;Parent=Phyra85970;constitutive=1;rank=1 scaffold_396 . CDS 7706 7816 . + 0 ID=Phyra85970;Parent=Phyra85970;rank=2 scaffold_396 . exon 7706 7816 . + . ID=Phyra85970.2;Parent=Phyra85970;constitutive=1;rank=2 scaffold_396 . CDS 7884 8989 . + 0 ID=Phyra85970;Parent=Phyra85970;rank=3 scaffold_396 . exon 7884 8989 . + . ID=Phyra85970.3;Parent=Phyra85970;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_396 . CDS 9089 9494 . + 0 ID=Phyra85970;Parent=Phyra85970;rank=4 scaffold_396 . exon 9089 9494 . + . ID=Phyra85970.4;Parent=Phyra85970;constitutive=1;ensembl_phase=2;rank=4 scaffold_396 . CDS 9694 9861 . + 0 ID=Phyra85970;Parent=Phyra85970;rank=5 scaffold_396 . exon 9694 9861 . + . ID=Phyra85970.5;Parent=Phyra85970;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_399 1 14204 scaffold_399 . biological_region 682 685 0.999 + . logic_name=eponine scaffold_399 . repeat_region 754 790 . ? . description=trf scaffold_399 . repeat_region 1372 6990 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_390 1 14252 scaffold_390 . repeat_region 117 131 . ? . description=dust scaffold_390 . repeat_region 2497 2504 . ? . description=dust scaffold_390 . repeat_region 2631 3460 . ? . description=dust scaffold_390 . repeat_region 3808 3850 . ? . description=trf scaffold_390 . biological_region 5275 5279 0.999 - . logic_name=eponine scaffold_390 ensembl protein_coding_gene 7264 7647 . - . ID=Phyra48336;biotype=protein_coding;external_name=gwEuk.390.1.1;logic_name=jgi_phyra1 scaffold_390 ensembl transcript 7264 7647 . - . ID=Phyra48336;Parent=Phyra48336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_390 . CDS 7264 7647 . - 0 ID=Phyra48336;Parent=Phyra48336;rank=1 scaffold_390 . exon 7264 7647 . - . ID=Phyra48336.1;Parent=Phyra48336;constitutive=1;rank=1 scaffold_390 ensembl protein_coding_gene 7953 8442 . - . ID=Phyra72389;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_390000001;logic_name=jgi_phyra1 scaffold_390 ensembl transcript 7953 8442 . - . ID=Phyra72389;Parent=Phyra72389;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_390 . CDS 7953 7978 . - 0 ID=Phyra72389;Parent=Phyra72389;rank=2 scaffold_390 . exon 7953 7978 . - . ID=Phyra72389.2;Parent=Phyra72389;constitutive=1;ensembl_phase=1;rank=2 scaffold_390 . CDS 8094 8442 . - 0 ID=Phyra72389;Parent=Phyra72389;rank=1 scaffold_390 . exon 8094 8442 . - . ID=Phyra72389.1;Parent=Phyra72389;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_389 1 14312 scaffold_389 . repeat_region 1335 1700 . ? . description=dust scaffold_389 . repeat_region 2272 2312 . ? . description=trf scaffold_389 . biological_region 4985 4990 0.999 + . logic_name=eponine scaffold_389 ensembl protein_coding_gene 3345 5789 . + . ID=Phyra48256;biotype=protein_coding;external_name=gwEuk.389.3.1;logic_name=jgi_phyra1 scaffold_389 ensembl transcript 3345 5789 . + . ID=Phyra48256;Parent=Phyra48256;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_389 . CDS 3345 5789 . + 0 ID=Phyra48256;Parent=Phyra48256;rank=1 scaffold_389 . exon 3345 5789 . + . ID=Phyra48256.1;Parent=Phyra48256;constitutive=1;rank=1 scaffold_389 ensembl protein_coding_gene 8891 9637 . + . ID=Phyra85953;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_389000002;logic_name=jgi_phyra1 scaffold_389 ensembl transcript 8891 9637 . + . ID=Phyra85953;Parent=Phyra85953;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_389 . CDS 8891 9637 . + 0 ID=Phyra85953;Parent=Phyra85953;rank=1 scaffold_389 . exon 8891 9637 . + . ID=Phyra85953.1;Parent=Phyra85953;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_391 1 14354 scaffold_391 . repeat_region 25 239 . - . description=GypsyPi-1c_I-int scaffold_391 . repeat_region 492 923 . - . description=GypsyPi-1c_I-int scaffold_391 . repeat_region 941 2376 . ? . description=dust scaffold_391 . biological_region 2693 2698 0.999 - . logic_name=eponine scaffold_391 . biological_region 2771 2774 0.999 - . logic_name=eponine scaffold_391 . biological_region 2822 2826 0.999 - . logic_name=eponine scaffold_391 . repeat_region 3376 3425 . ? . description=dust scaffold_391 . biological_region 3780 3782 0.999 - . logic_name=eponine scaffold_391 . repeat_region 6778 8203 . ? . description=dust scaffold_391 . repeat_region 10581 10604 . ? . description=trf scaffold_391 . repeat_region 11041 11131 . + . description=(TCG)n scaffold_391 . repeat_region 11058 11120 . ? . description=trf scaffold_391 . repeat_region 13177 13218 . ? . description=trf scaffold_391 ensembl protein_coding_gene 8361 9533 . + . ID=Phyra85955;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_391000001;logic_name=jgi_phyra1 scaffold_391 ensembl transcript 8361 9533 . + . ID=Phyra85955;Parent=Phyra85955;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_391 . CDS 8361 9533 . + 0 ID=Phyra85955;Parent=Phyra85955;rank=1 scaffold_391 . exon 8361 9533 . + . ID=Phyra85955.1;Parent=Phyra85955;constitutive=1;rank=1 scaffold_391 ensembl protein_coding_gene 13111 14083 . - . ID=Phyra85956;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_391000002;logic_name=jgi_phyra1 scaffold_391 ensembl transcript 13111 14083 . - . ID=Phyra85956;Parent=Phyra85956;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_391 . CDS 13111 13156 . - 0 ID=Phyra85956;Parent=Phyra85956;rank=2 scaffold_391 . exon 13111 13156 . - . ID=Phyra85956.2;Parent=Phyra85956;constitutive=1;ensembl_phase=2;rank=2 scaffold_391 . CDS 13296 14083 . - 0 ID=Phyra85956;Parent=Phyra85956;rank=1 scaffold_391 . exon 13296 14083 . - . ID=Phyra85956.1;Parent=Phyra85956;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_387 1 14485 scaffold_387 . repeat_region 838 887 . ? . description=dust scaffold_387 ensembl protein_coding_gene 336 1537 . + . ID=Phyra85945;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_387000001;logic_name=jgi_phyra1 scaffold_387 ensembl transcript 336 1537 . + . ID=Phyra85945;Parent=Phyra85945;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_387 . CDS 336 828 . + 0 ID=Phyra85945;Parent=Phyra85945;rank=1 scaffold_387 . exon 336 828 . + . ID=Phyra85945.1;Parent=Phyra85945;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_387 . CDS 935 1420 . + 0 ID=Phyra85945;Parent=Phyra85945;rank=2 scaffold_387 . exon 935 1420 . + . ID=Phyra85945.2;Parent=Phyra85945;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_387 . CDS 1527 1537 . + 0 ID=Phyra85945;Parent=Phyra85945;rank=3 scaffold_387 . exon 1527 1537 . + . ID=Phyra85945.3;Parent=Phyra85945;constitutive=1;ensembl_phase=1;rank=3 scaffold_387 ensembl protein_coding_gene 1908 6029 . - . ID=Phyra85946;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_387000002;logic_name=jgi_phyra1 scaffold_387 ensembl transcript 1908 6029 . - . ID=Phyra85946;Parent=Phyra85946;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_387 . CDS 1908 3736 . - 0 ID=Phyra85946;Parent=Phyra85946;rank=4 scaffold_387 . exon 1908 3736 . - . ID=Phyra85946.4;Parent=Phyra85946;constitutive=1;ensembl_phase=1;rank=4 scaffold_387 . CDS 3875 4045 . - 0 ID=Phyra85946;Parent=Phyra85946;rank=3 scaffold_387 . exon 3875 4045 . - . ID=Phyra85946.3;Parent=Phyra85946;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_387 . CDS 4493 5239 . - 0 ID=Phyra85946;Parent=Phyra85946;rank=2 scaffold_387 . exon 4493 5239 . - . ID=Phyra85946.2;Parent=Phyra85946;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_387 . CDS 5267 6029 . - 0 ID=Phyra85946;Parent=Phyra85946;rank=1 scaffold_387 . exon 5267 6029 . - . ID=Phyra85946.1;Parent=Phyra85946;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_387 ensembl protein_coding_gene 6328 8603 . + . ID=Phyra85947;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_387000003;logic_name=jgi_phyra1 scaffold_387 ensembl transcript 6328 8603 . + . ID=Phyra85947;Parent=Phyra85947;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_387 . CDS 6328 8603 . + 0 ID=Phyra85947;Parent=Phyra85947;rank=1 scaffold_387 . exon 6328 8603 . + . ID=Phyra85947.1;Parent=Phyra85947;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_387 . biological_region 9139 9141 0.999 - . logic_name=eponine scaffold_387 . biological_region 13025 13026 0.999 + . logic_name=eponine scaffold_387 ensembl protein_coding_gene 8590 9585 . + . ID=Phyra48251;biotype=protein_coding;external_name=gwEuk.387.5.1;logic_name=jgi_phyra1 scaffold_387 ensembl transcript 8590 9585 . + . ID=Phyra48251;Parent=Phyra48251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_387 . CDS 8590 9585 . + 0 ID=Phyra48251;Parent=Phyra48251;rank=1 scaffold_387 . exon 8590 9585 . + . ID=Phyra48251.1;Parent=Phyra48251;constitutive=1;rank=1 scaffold_387 ensembl protein_coding_gene 12417 13484 . - . ID=Phyra72388;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_387000002;logic_name=jgi_phyra1 scaffold_387 ensembl transcript 12417 13484 . - . ID=Phyra72388;Parent=Phyra72388;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_387 . CDS 12417 13484 . - 0 ID=Phyra72388;Parent=Phyra72388;rank=1 scaffold_387 . exon 12417 13484 . - . ID=Phyra72388.1;Parent=Phyra72388;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_388 1 14486 scaffold_388 . biological_region 1752 1757 0.999 - . logic_name=eponine scaffold_388 . repeat_region 5245 7007 . ? . description=dust scaffold_388 ensembl protein_coding_gene 3438 4863 . + . ID=Phyra85951;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_388000001;logic_name=jgi_phyra1 scaffold_388 ensembl transcript 3438 4863 . + . ID=Phyra85951;Parent=Phyra85951;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_388 . CDS 3438 4058 . + 0 ID=Phyra85951;Parent=Phyra85951;rank=1 scaffold_388 . exon 3438 4058 . + . ID=Phyra85951.1;Parent=Phyra85951;constitutive=1;rank=1 scaffold_388 . CDS 4147 4863 . + 0 ID=Phyra85951;Parent=Phyra85951;rank=2 scaffold_388 . exon 4147 4863 . + . ID=Phyra85951.2;Parent=Phyra85951;constitutive=1;rank=2 scaffold_388 . repeat_region 13711 13774 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_344 1 14515 scaffold_344 . repeat_region 1735 1771 . ? . description=trf scaffold_344 . repeat_region 2914 2927 . ? . description=dust scaffold_344 ensembl protein_coding_gene 4082 5029 . - . ID=Phyra85883;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_344000001;logic_name=jgi_phyra1 scaffold_344 ensembl transcript 4082 5029 . - . ID=Phyra85883;Parent=Phyra85883;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_344 . CDS 4082 5029 . - 0 ID=Phyra85883;Parent=Phyra85883;rank=1 scaffold_344 . exon 4082 5029 . - . ID=Phyra85883.1;Parent=Phyra85883;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_386 1 14586 scaffold_386 . repeat_region 4009 4016 . ? . description=dust scaffold_386 . repeat_region 4121 4170 . ? . description=dust scaffold_386 . repeat_region 4694 4744 . ? . description=trf scaffold_386 ensembl protein_coding_gene 7606 7881 . + . ID=Phyra48244;biotype=protein_coding;external_name=gwEuk.386.3.1;logic_name=jgi_phyra1 scaffold_386 ensembl transcript 7606 7881 . + . ID=Phyra48244;Parent=Phyra48244;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_386 . CDS 7606 7881 . + 0 ID=Phyra48244;Parent=Phyra48244;rank=1 scaffold_386 . exon 7606 7881 . + . ID=Phyra48244.1;Parent=Phyra48244;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_364 1 14596 scaffold_364 . repeat_region 1350 1386 . ? . description=dust scaffold_364 . repeat_region 1501 4205 . ? . description=dust scaffold_364 . biological_region 6851 6853 0.999 - . logic_name=eponine scaffold_364 . biological_region 7079 7080 0.999 - . logic_name=eponine scaffold_364 ensembl protein_coding_gene 6418 11798 . + . ID=Phyra85911;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_364000001;logic_name=jgi_phyra1 scaffold_364 ensembl transcript 6418 11798 . + . ID=Phyra85911;Parent=Phyra85911;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_364 . CDS 6418 7369 . + 0 ID=Phyra85911;Parent=Phyra85911;rank=1 scaffold_364 . exon 6418 7369 . + . ID=Phyra85911.1;Parent=Phyra85911;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_364 . CDS 7394 7555 . + 0 ID=Phyra85911;Parent=Phyra85911;rank=2 scaffold_364 . CDS 8370 9069 . + 0 ID=Phyra85911;Parent=Phyra85911;rank=3 scaffold_364 . CDS 9124 9202 . + 0 ID=Phyra85911;Parent=Phyra85911;rank=4 scaffold_364 . CDS 9325 9468 . + 0 ID=Phyra85911;Parent=Phyra85911;rank=5 scaffold_364 . CDS 9544 9856 . + 0 ID=Phyra85911;Parent=Phyra85911;rank=6 scaffold_364 . CDS 10076 10653 . + 0 ID=Phyra85911;Parent=Phyra85911;rank=7 scaffold_364 . CDS 10678 10758 . + 0 ID=Phyra85911;Parent=Phyra85911;rank=8 scaffold_364 . CDS 10809 11798 . + 0 ID=Phyra85911;Parent=Phyra85911;rank=9 scaffold_364 . repeat_region 9680 9778 . + . description=GypsyPi-1c_I-int scaffold_364 . repeat_region 10800 12910 . + . description=GypsyPi-1c_I-int scaffold_364 . repeat_region 14134 14163 . ? . description=trf scaffold_364 . exon 7394 7555 . + . ID=Phyra85911.2;Parent=Phyra85911;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_364 . exon 8370 9069 . + . ID=Phyra85911.3;Parent=Phyra85911;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_364 . exon 9124 9202 . + . ID=Phyra85911.4;Parent=Phyra85911;constitutive=1;ensembl_phase=2;rank=4 scaffold_364 . exon 9325 9468 . + . ID=Phyra85911.5;Parent=Phyra85911;constitutive=1;rank=5 scaffold_364 . exon 9544 9856 . + . ID=Phyra85911.6;Parent=Phyra85911;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_364 . exon 10076 10653 . + . ID=Phyra85911.7;Parent=Phyra85911;constitutive=1;ensembl_phase=1;rank=7 scaffold_364 . exon 10678 10758 . + . ID=Phyra85911.8;Parent=Phyra85911;constitutive=1;rank=8 scaffold_364 . exon 10809 11798 . + . ID=Phyra85911.9;Parent=Phyra85911;constitutive=1;rank=9 scaffold_364 ensembl protein_coding_gene 12842 14064 . - . ID=Phyra85912;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_364000002;logic_name=jgi_phyra1 scaffold_364 ensembl transcript 12842 14064 . - . ID=Phyra85912;Parent=Phyra85912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_364 . CDS 12842 12846 . - 0 ID=Phyra85912;Parent=Phyra85912;rank=3 scaffold_364 . exon 12842 12846 . - . ID=Phyra85912.3;Parent=Phyra85912;constitutive=1;ensembl_phase=1;rank=3 scaffold_364 . CDS 13020 13217 . - 0 ID=Phyra85912;Parent=Phyra85912;rank=2 scaffold_364 . exon 13020 13217 . - . ID=Phyra85912.2;Parent=Phyra85912;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_364 . CDS 13242 14064 . - 0 ID=Phyra85912;Parent=Phyra85912;rank=1 scaffold_364 . exon 13242 14064 . - . ID=Phyra85912.1;Parent=Phyra85912;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_384 1 14708 scaffold_384 . repeat_region 539 556 . ? . description=dust scaffold_384 . repeat_region 893 3750 . ? . description=dust scaffold_384 . biological_region 4113 4115 0.999 + . logic_name=eponine scaffold_384 . biological_region 4158 4163 0.999 + . logic_name=eponine scaffold_384 . repeat_region 4175 4241 . + . description=(CGGA)n scaffold_384 . repeat_region 4178 4239 . ? . description=dust scaffold_384 . repeat_region 4185 4239 . ? . description=trf scaffold_384 . repeat_region 4339 4377 . ? . description=trf scaffold_384 . repeat_region 4371 4399 . ? . description=trf scaffold_384 . repeat_region 4548 4560 . ? . description=dust scaffold_384 . repeat_region 5898 6131 . ? . description=dust scaffold_384 ensembl protein_coding_gene 6401 6778 . - . ID=Phyra48241;biotype=protein_coding;external_name=gwEuk.384.5.1;logic_name=jgi_phyra1 scaffold_384 ensembl transcript 6401 6778 . - . ID=Phyra48241;Parent=Phyra48241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_384 . CDS 6401 6778 . - 0 ID=Phyra48241;Parent=Phyra48241;rank=1 scaffold_384 . exon 6401 6778 . - . ID=Phyra48241.1;Parent=Phyra48241;constitutive=1;rank=1 scaffold_384 ensembl protein_coding_gene 7258 8007 . + . ID=Phyra85943;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_384000001;logic_name=jgi_phyra1 scaffold_384 ensembl transcript 7258 8007 . + . ID=Phyra85943;Parent=Phyra85943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_384 . CDS 7258 8007 . + 0 ID=Phyra85943;Parent=Phyra85943;rank=1 scaffold_384 . exon 7258 8007 . + . ID=Phyra85943.1;Parent=Phyra85943;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_392 1 14715 scaffold_392 . repeat_region 254 280 . ? . description=trf scaffold_392 . repeat_region 2133 2144 . ? . description=dust scaffold_392 . repeat_region 2152 2201 . ? . description=dust scaffold_392 . repeat_region 3182 3561 . ? . description=dust scaffold_392 . repeat_region 4864 4911 . ? . description=dust scaffold_392 . biological_region 5871 5876 0.999 + . logic_name=eponine scaffold_392 . biological_region 6584 6588 0.999 + . logic_name=eponine scaffold_392 . repeat_region 6652 6731 . ? . description=trf scaffold_392 . biological_region 7081 7085 0.999 - . logic_name=eponine scaffold_392 ensembl protein_coding_gene 17 729 . - . ID=Phyra85957;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_392000001;logic_name=jgi_phyra1 scaffold_392 ensembl transcript 17 729 . - . ID=Phyra85957;Parent=Phyra85957;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_392 . CDS 17 640 . - 0 ID=Phyra85957;Parent=Phyra85957;rank=2 scaffold_392 . exon 17 640 . - . ID=Phyra85957.2;Parent=Phyra85957;constitutive=1;rank=2 scaffold_392 . CDS 706 729 . - 0 ID=Phyra85957;Parent=Phyra85957;rank=1 scaffold_392 . exon 706 729 . - . ID=Phyra85957.1;Parent=Phyra85957;constitutive=1;rank=1 scaffold_392 ensembl protein_coding_gene 4894 7309 . + . ID=Phyra85958;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_392000002;logic_name=jgi_phyra1 scaffold_392 ensembl transcript 4894 7309 . + . ID=Phyra85958;Parent=Phyra85958;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_392 . CDS 4894 5154 . + 0 ID=Phyra85958;Parent=Phyra85958;rank=1 scaffold_392 . exon 4894 5154 . + . ID=Phyra85958.1;Parent=Phyra85958;constitutive=1;rank=1 scaffold_392 . CDS 5216 5482 . + 0 ID=Phyra85958;Parent=Phyra85958;rank=2 scaffold_392 . exon 5216 5482 . + . ID=Phyra85958.2;Parent=Phyra85958;constitutive=1;rank=2 scaffold_392 . CDS 5561 7309 . + 0 ID=Phyra85958;Parent=Phyra85958;rank=3 scaffold_392 . exon 5561 7309 . + . ID=Phyra85958.3;Parent=Phyra85958;constitutive=1;rank=3 scaffold_392 ensembl protein_coding_gene 13301 14473 . - . ID=Phyra85959;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_392000003;logic_name=jgi_phyra1 scaffold_392 ensembl transcript 13301 14473 . - . ID=Phyra85959;Parent=Phyra85959;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_392 . CDS 13301 14473 . - 0 ID=Phyra85959;Parent=Phyra85959;rank=1 scaffold_392 . exon 13301 14473 . - . ID=Phyra85959.1;Parent=Phyra85959;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_383 1 14740 scaffold_383 . repeat_region 750 4167 . ? . description=dust scaffold_383 . repeat_region 4192 5447 . - . description=Gypsy-2-I_PI-int scaffold_383 ensembl protein_coding_gene 4170 4496 . - . ID=Phyra48235;biotype=protein_coding;external_name=gwEuk.383.1.1;logic_name=jgi_phyra1 scaffold_383 ensembl transcript 4170 4496 . - . ID=Phyra48235;Parent=Phyra48235;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_383 . CDS 4170 4496 . - 0 ID=Phyra48235;Parent=Phyra48235;rank=1 scaffold_383 . exon 4170 4496 . - . ID=Phyra48235.1;Parent=Phyra48235;constitutive=1;rank=1 scaffold_383 ensembl protein_coding_gene 206 484 . - . ID=Phyra48236;biotype=protein_coding;external_name=gwEuk.383.2.1;logic_name=jgi_phyra1 scaffold_383 ensembl transcript 206 484 . - . ID=Phyra48236;Parent=Phyra48236;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_383 . CDS 206 484 . - 0 ID=Phyra48236;Parent=Phyra48236;rank=1 scaffold_383 . exon 206 484 . - . ID=Phyra48236.1;Parent=Phyra48236;constitutive=1;rank=1 scaffold_383 ensembl protein_coding_gene 12028 13839 . + . ID=Phyra85942;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_383000001;logic_name=jgi_phyra1 scaffold_383 ensembl transcript 12028 13839 . + . ID=Phyra85942;Parent=Phyra85942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_383 . CDS 12028 13839 . + 0 ID=Phyra85942;Parent=Phyra85942;rank=1 scaffold_383 . exon 12028 13839 . + . ID=Phyra85942.1;Parent=Phyra85942;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_381 1 14829 scaffold_381 . biological_region 306 309 0.999 + . logic_name=eponine scaffold_381 . repeat_region 770 2169 . ? . description=dust scaffold_381 ensembl protein_coding_gene 1 432 . - . ID=Phyra48232;biotype=protein_coding;external_name=gwEuk.381.3.1;logic_name=jgi_phyra1 scaffold_381 ensembl transcript 1 432 . - . ID=Phyra48232;Parent=Phyra48232;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_381 . CDS 1 432 . - 0 ID=Phyra48232;Parent=Phyra48232;rank=1 scaffold_381 . exon 1 432 . - . ID=Phyra48232.1;Parent=Phyra48232;constitutive=1;rank=1 scaffold_381 ensembl protein_coding_gene 2845 4527 . - . ID=Phyra85939;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_381000002;logic_name=jgi_phyra1 scaffold_381 ensembl transcript 2845 4527 . - . ID=Phyra85939;Parent=Phyra85939;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_381 . CDS 2845 3233 . - 0 ID=Phyra85939;Parent=Phyra85939;rank=3 scaffold_381 . exon 2845 3233 . - . ID=Phyra85939.3;Parent=Phyra85939;constitutive=1;ensembl_phase=1;rank=3 scaffold_381 . CDS 3353 4342 . - 0 ID=Phyra85939;Parent=Phyra85939;rank=2 scaffold_381 . exon 3353 4342 . - . ID=Phyra85939.2;Parent=Phyra85939;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_381 . CDS 4464 4527 . - 0 ID=Phyra85939;Parent=Phyra85939;rank=1 scaffold_381 . exon 4464 4527 . - . ID=Phyra85939.1;Parent=Phyra85939;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_381 ensembl protein_coding_gene 5307 6017 . - . ID=Phyra85940;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_381000003;logic_name=jgi_phyra1 scaffold_381 ensembl transcript 5307 6017 . - . ID=Phyra85940;Parent=Phyra85940;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_381 . CDS 5307 6017 . - 0 ID=Phyra85940;Parent=Phyra85940;rank=1 scaffold_381 . exon 5307 6017 . - . ID=Phyra85940.1;Parent=Phyra85940;constitutive=1;rank=1 scaffold_381 . repeat_region 8614 8640 . ? . description=trf scaffold_381 . repeat_region 11838 11889 . - . description=IS30 ##gff-version 3 ##sequence-region scaffold_382 1 14831 scaffold_382 . repeat_region 23 65 . ? . description=trf scaffold_382 . repeat_region 1020 6099 . ? . description=dust scaffold_382 . repeat_region 6656 6698 . ? . description=trf scaffold_382 . repeat_region 6821 6846 . ? . description=trf scaffold_382 ensembl tRNA_gene 7074 7145 . + . ID=EPrPRAG00000000148;biotype=tRNA;description=tRNA-Gly for anticodon UCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_382 ensembl transcript 7074 7145 . + . ID=EPrPRAT00000000148;Parent=EPrPRAG00000000148;biotype=tRNA;logic_name=ncrna_eg scaffold_382 . exon 7074 7145 . + . ID=EPrPRAE00000000148;Parent=EPrPRAT00000000148;constitutive=1;rank=1 scaffold_382 ensembl protein_coding_gene 7427 9262 . - . ID=Phyra85941;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_382000001;logic_name=jgi_phyra1 scaffold_382 ensembl transcript 7427 9262 . - . ID=Phyra85941;Parent=Phyra85941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_382 . CDS 7427 9262 . - 0 ID=Phyra85941;Parent=Phyra85941;rank=1 scaffold_382 . exon 7427 9262 . - . ID=Phyra85941.1;Parent=Phyra85941;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_380 1 14844 scaffold_380 . biological_region 1357 1360 0.999 + . logic_name=eponine scaffold_380 . biological_region 6378 6380 0.999 + . logic_name=eponine scaffold_380 ensembl protein_coding_gene 323 2026 . - . ID=Phyra85936;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_380000001;logic_name=jgi_phyra1 scaffold_380 ensembl transcript 323 2026 . - . ID=Phyra85936;Parent=Phyra85936;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_380 . CDS 323 2026 . - 0 ID=Phyra85936;Parent=Phyra85936;rank=1 scaffold_380 . exon 323 2026 . - . ID=Phyra85936.1;Parent=Phyra85936;constitutive=1;rank=1 scaffold_380 ensembl protein_coding_gene 3138 7316 . - . ID=Phyra85937;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_380000002;logic_name=jgi_phyra1 scaffold_380 ensembl transcript 3138 7316 . - . ID=Phyra85937;Parent=Phyra85937;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_380 . CDS 3138 3437 . - 0 ID=Phyra85937;Parent=Phyra85937;rank=5 scaffold_380 . exon 3138 3437 . - . ID=Phyra85937.5;Parent=Phyra85937;constitutive=1;rank=5 scaffold_380 . CDS 3491 4728 . - 0 ID=Phyra85937;Parent=Phyra85937;rank=4 scaffold_380 . exon 3491 4728 . - . ID=Phyra85937.4;Parent=Phyra85937;constitutive=1;ensembl_phase=1;rank=4 scaffold_380 . CDS 5828 6348 . - 0 ID=Phyra85937;Parent=Phyra85937;rank=3 scaffold_380 . exon 5828 6348 . - . ID=Phyra85937.3;Parent=Phyra85937;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_380 . CDS 6403 6864 . - 0 ID=Phyra85937;Parent=Phyra85937;rank=2 scaffold_380 . exon 6403 6864 . - . ID=Phyra85937.2;Parent=Phyra85937;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_380 . CDS 6907 7316 . - 0 ID=Phyra85937;Parent=Phyra85937;rank=1 scaffold_380 . exon 6907 7316 . - . ID=Phyra85937.1;Parent=Phyra85937;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_380 . repeat_region 8041 8975 . ? . description=dust scaffold_380 . repeat_region 14588 14595 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_367 1 14894 scaffold_367 . repeat_region 1767 1816 . ? . description=dust scaffold_367 . biological_region 2050 2051 0.999 + . logic_name=eponine scaffold_367 . repeat_region 3620 6199 . ? . description=dust scaffold_367 . repeat_region 6418 6425 . ? . description=dust scaffold_367 . repeat_region 6461 6477 . ? . description=dust scaffold_367 . repeat_region 6769 6799 . ? . description=dust scaffold_367 . repeat_region 14302 14335 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_385 1 14896 scaffold_385 . repeat_region 94 663 . - . description=GypsyPi-1c_I-int scaffold_385 . biological_region 483 486 0.999 + . logic_name=eponine scaffold_385 . repeat_region 1136 1179 . ? . description=trf scaffold_385 . repeat_region 1618 4738 . ? . description=dust scaffold_385 . repeat_region 5515 6306 . ? . description=dust scaffold_385 ensembl protein_coding_gene 13699 14603 . - . ID=Phyra85944;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_385000001;logic_name=jgi_phyra1 scaffold_385 ensembl transcript 13699 14603 . - . ID=Phyra85944;Parent=Phyra85944;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_385 . CDS 13699 13784 . - 0 ID=Phyra85944;Parent=Phyra85944;rank=2 scaffold_385 . exon 13699 13784 . - . ID=Phyra85944.2;Parent=Phyra85944;constitutive=1;ensembl_phase=1;rank=2 scaffold_385 . CDS 13811 14603 . - 0 ID=Phyra85944;Parent=Phyra85944;rank=1 scaffold_385 . exon 13811 14603 . - . ID=Phyra85944.1;Parent=Phyra85944;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_376 1 14908 scaffold_376 . biological_region 636 642 0.999 - . logic_name=eponine scaffold_376 . biological_region 732 732 0.999 + . logic_name=eponine scaffold_376 . biological_region 823 826 0.999 - . logic_name=eponine scaffold_376 . repeat_region 1638 2283 . ? . description=dust scaffold_376 . repeat_region 2287 2685 . - . description=GypsyPi-1c_I-int scaffold_376 . repeat_region 2909 4040 . - . description=GypsyPi-1c_I-int scaffold_376 . repeat_region 4042 5354 . ? . description=dust scaffold_376 . repeat_region 7363 7414 . ? . description=trf scaffold_376 ensembl protein_coding_gene 162 1384 . + . ID=Phyra85930;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_376000001;logic_name=jgi_phyra1 scaffold_376 ensembl transcript 162 1384 . + . ID=Phyra85930;Parent=Phyra85930;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_376 . CDS 162 738 . + 0 ID=Phyra85930;Parent=Phyra85930;rank=1 scaffold_376 . exon 162 738 . + . ID=Phyra85930.1;Parent=Phyra85930;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_376 . CDS 842 1042 . + 0 ID=Phyra85930;Parent=Phyra85930;rank=2 scaffold_376 . exon 842 1042 . + . ID=Phyra85930.2;Parent=Phyra85930;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_376 . CDS 1139 1182 . + 0 ID=Phyra85930;Parent=Phyra85930;rank=3 scaffold_376 . exon 1139 1182 . + . ID=Phyra85930.3;Parent=Phyra85930;constitutive=1;ensembl_phase=1;rank=3 scaffold_376 . CDS 1277 1384 . + 0 ID=Phyra85930;Parent=Phyra85930;rank=4 scaffold_376 . exon 1277 1384 . + . ID=Phyra85930.4;Parent=Phyra85930;constitutive=1;rank=4 scaffold_376 ensembl protein_coding_gene 10140 12955 . + . ID=Phyra85931;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_376000002;logic_name=jgi_phyra1 scaffold_376 ensembl transcript 10140 12955 . + . ID=Phyra85931;Parent=Phyra85931;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_376 . CDS 10140 10925 . + 0 ID=Phyra85931;Parent=Phyra85931;rank=1 scaffold_376 . exon 10140 10925 . + . ID=Phyra85931.1;Parent=Phyra85931;constitutive=1;rank=1 scaffold_376 . CDS 11440 11637 . + 0 ID=Phyra85931;Parent=Phyra85931;rank=2 scaffold_376 . exon 11440 11637 . + . ID=Phyra85931.2;Parent=Phyra85931;constitutive=1;rank=2 scaffold_376 . CDS 11686 12848 . + 0 ID=Phyra85931;Parent=Phyra85931;rank=3 scaffold_376 . exon 11686 12848 . + . ID=Phyra85931.3;Parent=Phyra85931;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_376 . CDS 12943 12955 . + 0 ID=Phyra85931;Parent=Phyra85931;rank=4 scaffold_376 . exon 12943 12955 . + . ID=Phyra85931.4;Parent=Phyra85931;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_378 1 14951 scaffold_378 . biological_region 581 586 0.999 + . logic_name=eponine scaffold_378 . biological_region 1100 1100 0.999 - . logic_name=eponine scaffold_378 . biological_region 6916 6919 0.999 + . logic_name=eponine scaffold_378 . biological_region 6961 6963 0.999 + . logic_name=eponine scaffold_378 . biological_region 7321 7325 0.999 - . logic_name=eponine scaffold_378 ensembl protein_coding_gene 306 1019 . - . ID=Phyra72385;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_378000001;logic_name=jgi_phyra1 scaffold_378 ensembl transcript 306 1019 . - . ID=Phyra72385;Parent=Phyra72385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_378 . CDS 306 1019 . - 0 ID=Phyra72385;Parent=Phyra72385;rank=1 scaffold_378 . exon 306 1019 . - . ID=Phyra72385.1;Parent=Phyra72385;constitutive=1;rank=1 scaffold_378 ensembl protein_coding_gene 2299 7320 . - . ID=Phyra85934;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_378000002;logic_name=jgi_phyra1 scaffold_378 ensembl transcript 2299 7320 . - . ID=Phyra85934;Parent=Phyra85934;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_378 . CDS 2299 3655 . - 0 ID=Phyra85934;Parent=Phyra85934;rank=4 scaffold_378 . exon 2299 3655 . - . ID=Phyra85934.4;Parent=Phyra85934;constitutive=1;ensembl_phase=2;rank=4 scaffold_378 . CDS 3707 3807 . - 0 ID=Phyra85934;Parent=Phyra85934;rank=3 scaffold_378 . exon 3707 3807 . - . ID=Phyra85934.3;Parent=Phyra85934;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_378 . CDS 4357 4538 . - 0 ID=Phyra85934;Parent=Phyra85934;rank=2 scaffold_378 . exon 4357 4538 . - . ID=Phyra85934.2;Parent=Phyra85934;constitutive=1;ensembl_phase=1;rank=2 scaffold_378 . CDS 4752 7320 . - 0 ID=Phyra85934;Parent=Phyra85934;rank=1 scaffold_378 . exon 4752 7320 . - . ID=Phyra85934.1;Parent=Phyra85934;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_378 . repeat_region 7825 7874 . ? . description=dust scaffold_378 ensembl protein_coding_gene 10648 11802 . - . ID=Phyra48104;biotype=protein_coding;external_name=gwEuk.378.2.1;logic_name=jgi_phyra1 scaffold_378 ensembl transcript 10648 11802 . - . ID=Phyra48104;Parent=Phyra48104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_378 . CDS 10648 11514 . - 0 ID=Phyra48104;Parent=Phyra48104;rank=2 scaffold_378 . exon 10648 11514 . - . ID=Phyra48104.2;Parent=Phyra48104;constitutive=1;rank=2 scaffold_378 . CDS 11587 11802 . - 0 ID=Phyra48104;Parent=Phyra48104;rank=1 scaffold_378 . exon 11587 11802 . - . ID=Phyra48104.1;Parent=Phyra48104;constitutive=1;rank=1 scaffold_378 ensembl protein_coding_gene 13678 14415 . + . ID=Phyra72386;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_378000002;logic_name=jgi_phyra1 scaffold_378 ensembl transcript 13678 14415 . + . ID=Phyra72386;Parent=Phyra72386;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_378 . CDS 13678 14415 . + 0 ID=Phyra72386;Parent=Phyra72386;rank=1 scaffold_378 . exon 13678 14415 . + . ID=Phyra72386.1;Parent=Phyra72386;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_377 1 14953 scaffold_377 . repeat_region 977 1941 . ? . description=dust scaffold_377 . repeat_region 3290 6856 . ? . description=dust scaffold_377 ensembl protein_coding_gene 446 2923 . + . ID=Phyra85932;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_377000001;logic_name=jgi_phyra1 scaffold_377 ensembl transcript 446 2923 . + . ID=Phyra85932;Parent=Phyra85932;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_377 . CDS 446 779 . + 0 ID=Phyra85932;Parent=Phyra85932;rank=1 scaffold_377 . exon 446 779 . + . ID=Phyra85932.1;Parent=Phyra85932;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_377 . CDS 1996 2811 . + 0 ID=Phyra85932;Parent=Phyra85932;rank=2 scaffold_377 . exon 1996 2811 . + . ID=Phyra85932.2;Parent=Phyra85932;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_377 . CDS 2901 2923 . + 0 ID=Phyra85932;Parent=Phyra85932;rank=3 scaffold_377 . exon 2901 2923 . + . ID=Phyra85932.3;Parent=Phyra85932;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_379 1 14962 scaffold_379 . repeat_region 1222 5193 . ? . description=dust scaffold_379 . repeat_region 6225 6274 . ? . description=dust scaffold_379 . biological_region 7407 7409 0.999 + . logic_name=eponine scaffold_379 . repeat_region 7557 7580 . ? . description=trf scaffold_379 . repeat_region 7925 7979 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_372 1 14989 scaffold_372 . repeat_region 741 6257 . ? . description=dust scaffold_372 . biological_region 9329 9331 0.999 + . logic_name=eponine scaffold_372 ensembl protein_coding_gene 12069 13346 . - . ID=Phyra85922;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_372000001;logic_name=jgi_phyra1 scaffold_372 ensembl transcript 12069 13346 . - . ID=Phyra85922;Parent=Phyra85922;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_372 . CDS 12069 12099 . - 0 ID=Phyra85922;Parent=Phyra85922;rank=2 scaffold_372 . exon 12069 12099 . - . ID=Phyra85922.2;Parent=Phyra85922;constitutive=1;ensembl_phase=2;rank=2 scaffold_372 . CDS 12946 13346 . - 0 ID=Phyra85922;Parent=Phyra85922;rank=1 scaffold_372 . exon 12946 13346 . - . ID=Phyra85922.1;Parent=Phyra85922;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_375 1 14997 scaffold_375 . repeat_region 119 397 . + . description=GypsyPi-1c_I-int scaffold_375 . repeat_region 650 5783 . ? . description=dust scaffold_375 . repeat_region 5809 6187 . + . description=GypsyPi-1c_I-int scaffold_375 . repeat_region 6618 6809 . ? . description=dust scaffold_375 ensembl protein_coding_gene 6097 7426 . - . ID=Phyra85929;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_375000001;logic_name=jgi_phyra1 scaffold_375 ensembl transcript 6097 7426 . - . ID=Phyra85929;Parent=Phyra85929;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_375 . CDS 6097 6360 . - 0 ID=Phyra85929;Parent=Phyra85929;rank=2 scaffold_375 . exon 6097 6360 . - . ID=Phyra85929.2;Parent=Phyra85929;constitutive=1;rank=2 scaffold_375 . CDS 6851 7426 . - 0 ID=Phyra85929;Parent=Phyra85929;rank=1 scaffold_375 . exon 6851 7426 . - . ID=Phyra85929.1;Parent=Phyra85929;constitutive=1;rank=1 scaffold_375 . biological_region 14340 14340 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_373 1 15022 scaffold_373 . repeat_region 185 192 . ? . description=dust scaffold_373 . repeat_region 596 603 . ? . description=dust scaffold_373 ensembl pseudogene 3064 3333 . - . ID=Phyra48101;biotype=pseudogene;external_name=gwEuk.373.7.1;logic_name=jgi_phyra1 scaffold_373 ensembl pseudogene 3064 3333 . - . ID=Phyra48101;Parent=Phyra48101;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_373 . exon 3064 3333 . - . ID=Phyra48101.1;Parent=Phyra48101;constitutive=1;rank=1 scaffold_373 ensembl protein_coding_gene 3355 3519 . - . ID=Phyra48102;biotype=protein_coding;external_name=gwEuk.373.8.1;logic_name=jgi_phyra1 scaffold_373 ensembl transcript 3355 3519 . - . ID=Phyra48102;Parent=Phyra48102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_373 . CDS 3355 3519 . - 0 ID=Phyra48102;Parent=Phyra48102;rank=1 scaffold_373 . exon 3355 3519 . - . ID=Phyra48102.1;Parent=Phyra48102;constitutive=1;rank=1 scaffold_373 ensembl protein_coding_gene 2092 3066 . - . ID=Phyra85923;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_373000001;logic_name=jgi_phyra1 scaffold_373 ensembl transcript 2092 3066 . - . ID=Phyra85923;Parent=Phyra85923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_373 . CDS 2092 2421 . - 0 ID=Phyra85923;Parent=Phyra85923;rank=2 scaffold_373 . exon 2092 2421 . - . ID=Phyra85923.2;Parent=Phyra85923;constitutive=1;rank=2 scaffold_373 . CDS 2452 3066 . - 0 ID=Phyra85923;Parent=Phyra85923;rank=1 scaffold_373 . exon 2452 3066 . - . ID=Phyra85923.1;Parent=Phyra85923;constitutive=1;rank=1 scaffold_373 ensembl protein_coding_gene 4605 6179 . - . ID=Phyra85925;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_373000003;logic_name=jgi_phyra1 scaffold_373 ensembl transcript 4605 6179 . - . ID=Phyra85925;Parent=Phyra85925;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_373 . CDS 4605 6179 . - 0 ID=Phyra85925;Parent=Phyra85925;rank=1 scaffold_373 . exon 4605 6179 . - . ID=Phyra85925.1;Parent=Phyra85925;constitutive=1;rank=1 scaffold_373 . repeat_region 8588 8634 . ? . description=trf scaffold_373 . repeat_region 9074 9101 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_374 1 15025 scaffold_374 . repeat_region 2176 4609 . ? . description=dust scaffold_374 . repeat_region 5459 5466 . ? . description=dust scaffold_374 ensembl protein_coding_gene 7276 7584 . - . ID=Phyra85926;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_374000001;logic_name=jgi_phyra1 scaffold_374 ensembl transcript 7276 7584 . - . ID=Phyra85926;Parent=Phyra85926;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_374 . CDS 7276 7584 . - 0 ID=Phyra85926;Parent=Phyra85926;rank=1 scaffold_374 . exon 7276 7584 . - . ID=Phyra85926.1;Parent=Phyra85926;constitutive=1;rank=1 scaffold_374 . repeat_region 8967 9026 . ? . description=trf scaffold_374 . repeat_region 8967 9026 . ? . description=trf scaffold_374 . repeat_region 14916 15025 . ? . description=trf scaffold_374 ensembl protein_coding_gene 9538 12849 . + . ID=Phyra85927;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_374000002;logic_name=jgi_phyra1 scaffold_374 ensembl transcript 9538 12849 . + . ID=Phyra85927;Parent=Phyra85927;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_374 . CDS 9538 12408 . + 0 ID=Phyra85927;Parent=Phyra85927;rank=1 scaffold_374 . exon 9538 12408 . + . ID=Phyra85927.1;Parent=Phyra85927;constitutive=1;rank=1 scaffold_374 . CDS 12472 12849 . + 0 ID=Phyra85927;Parent=Phyra85927;rank=2 scaffold_374 . exon 12472 12849 . + . ID=Phyra85927.2;Parent=Phyra85927;constitutive=1;rank=2 scaffold_374 ensembl protein_coding_gene 14242 14912 . + . ID=Phyra85928;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_374000003;logic_name=jgi_phyra1 scaffold_374 ensembl transcript 14242 14912 . + . ID=Phyra85928;Parent=Phyra85928;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_374 . CDS 14242 14494 . + 0 ID=Phyra85928;Parent=Phyra85928;rank=1 scaffold_374 . exon 14242 14494 . + . ID=Phyra85928.1;Parent=Phyra85928;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_374 . CDS 14541 14912 . + 0 ID=Phyra85928;Parent=Phyra85928;rank=2 scaffold_374 . exon 14541 14912 . + . ID=Phyra85928.2;Parent=Phyra85928;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_369 1 15151 scaffold_369 . repeat_region 52 404 . - . description=Polinton-1_PI scaffold_369 . repeat_region 502 1688 . - . description=Polinton-1_PI scaffold_369 . repeat_region 1703 7079 . ? . description=dust scaffold_369 . repeat_region 7290 7774 . - . description=Polinton-1_PI scaffold_369 . repeat_region 14487 14554 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_361 1 15166 scaffold_361 . repeat_region 410 430 . ? . description=trf scaffold_361 . repeat_region 3065 3074 . ? . description=dust scaffold_361 . biological_region 6079 6083 0.999 + . logic_name=eponine scaffold_361 . repeat_region 6184 6231 . ? . description=trf scaffold_361 . repeat_region 6184 6231 . ? . description=trf scaffold_361 ensembl protein_coding_gene 1774 2853 . - . ID=Phyra85908;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_361000001;logic_name=jgi_phyra1 scaffold_361 ensembl transcript 1774 2853 . - . ID=Phyra85908;Parent=Phyra85908;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_361 . CDS 1774 2377 . - 0 ID=Phyra85908;Parent=Phyra85908;rank=3 scaffold_361 . exon 1774 2377 . - . ID=Phyra85908.3;Parent=Phyra85908;constitutive=1;ensembl_phase=2;rank=3 scaffold_361 . CDS 2400 2617 . - 0 ID=Phyra85908;Parent=Phyra85908;rank=2 scaffold_361 . exon 2400 2617 . - . ID=Phyra85908.2;Parent=Phyra85908;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_361 . CDS 2641 2853 . - 0 ID=Phyra85908;Parent=Phyra85908;rank=1 scaffold_361 . exon 2641 2853 . - . ID=Phyra85908.1;Parent=Phyra85908;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_368 1 15170 scaffold_368 . repeat_region 884 4598 . ? . description=dust scaffold_368 ensembl protein_coding_gene 6132 7944 . + . ID=Phyra85914;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_368000001;logic_name=jgi_phyra1 scaffold_368 ensembl transcript 6132 7944 . + . ID=Phyra85914;Parent=Phyra85914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_368 . CDS 6132 7755 . + 0 ID=Phyra85914;Parent=Phyra85914;rank=1 scaffold_368 . exon 6132 7755 . + . ID=Phyra85914.1;Parent=Phyra85914;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_368 . CDS 7853 7944 . + 0 ID=Phyra85914;Parent=Phyra85914;rank=2 scaffold_368 . exon 7853 7944 . + . ID=Phyra85914.2;Parent=Phyra85914;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_366 1 15230 scaffold_366 . repeat_region 368 1994 . - . description=GypsyPi-1c_I-int scaffold_366 . repeat_region 1995 7549 . ? . description=dust scaffold_366 ensembl protein_coding_gene 7566 8714 . + . ID=Phyra72383;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_366000001;logic_name=jgi_phyra1 scaffold_366 ensembl transcript 7566 8714 . + . ID=Phyra72383;Parent=Phyra72383;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_366 . CDS 7566 8714 . + 0 ID=Phyra72383;Parent=Phyra72383;rank=1 scaffold_366 . exon 7566 8714 . + . ID=Phyra72383.1;Parent=Phyra72383;constitutive=1;rank=1 scaffold_366 . biological_region 14779 14781 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_365 1 15238 scaffold_365 . repeat_region 1390 1453 . ? . description=trf scaffold_365 . repeat_region 1763 6815 . ? . description=dust scaffold_365 . repeat_region 6930 6965 . ? . description=trf scaffold_365 . repeat_region 6930 6965 . ? . description=trf scaffold_365 . repeat_region 7569 7639 . ? . description=trf scaffold_365 . repeat_region 7582 7658 . ? . description=trf scaffold_365 . biological_region 8143 8146 0.999 - . logic_name=eponine scaffold_365 . biological_region 8289 8295 0.999 - . logic_name=eponine scaffold_365 . biological_region 8319 8323 0.999 - . logic_name=eponine scaffold_365 . biological_region 9334 9335 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_370 1 15350 scaffold_370 . biological_region 540 542 0.999 + . logic_name=eponine scaffold_370 . repeat_region 1392 6872 . ? . description=dust scaffold_370 . repeat_region 6897 6964 . ? . description=trf scaffold_370 . repeat_region 6900 6933 . ? . description=trf scaffold_370 . repeat_region 6903 6931 . ? . description=trf scaffold_370 . repeat_region 6903 6931 . ? . description=dust scaffold_370 ensembl protein_coding_gene 329 1171 . - . ID=Phyra85915;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_370000001;logic_name=jgi_phyra1 scaffold_370 ensembl transcript 329 1171 . - . ID=Phyra85915;Parent=Phyra85915;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_370 . CDS 329 1171 . - 0 ID=Phyra85915;Parent=Phyra85915;rank=1 scaffold_370 . exon 329 1171 . - . ID=Phyra85915.1;Parent=Phyra85915;constitutive=1;rank=1 scaffold_370 ensembl protein_coding_gene 7431 9305 . + . ID=Phyra85916;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_370000002;logic_name=jgi_phyra1 scaffold_370 ensembl transcript 7431 9305 . + . ID=Phyra85916;Parent=Phyra85916;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_370 . CDS 7431 7553 . + 0 ID=Phyra85916;Parent=Phyra85916;rank=1 scaffold_370 . exon 7431 7553 . + . ID=Phyra85916.1;Parent=Phyra85916;constitutive=1;rank=1 scaffold_370 . CDS 7649 7765 . + 0 ID=Phyra85916;Parent=Phyra85916;rank=2 scaffold_370 . exon 7649 7765 . + . ID=Phyra85916.2;Parent=Phyra85916;constitutive=1;rank=2 scaffold_370 . CDS 7829 7891 . + 0 ID=Phyra85916;Parent=Phyra85916;rank=3 scaffold_370 . CDS 7964 8255 . + 0 ID=Phyra85916;Parent=Phyra85916;rank=4 scaffold_370 . CDS 8347 9305 . + 0 ID=Phyra85916;Parent=Phyra85916;rank=5 scaffold_370 . exon 7829 7891 . + . ID=Phyra85916.3;Parent=Phyra85916;constitutive=1;rank=3 scaffold_370 . exon 7964 8255 . + . ID=Phyra85916.4;Parent=Phyra85916;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_370 . exon 8347 9305 . + . ID=Phyra85916.5;Parent=Phyra85916;constitutive=1;ensembl_phase=1;rank=5 ##gff-version 3 ##sequence-region scaffold_363 1 15492 scaffold_363 . repeat_region 1662 1686 . ? . description=trf scaffold_363 . repeat_region 5289 5310 . ? . description=trf scaffold_363 . repeat_region 5289 5310 . ? . description=dust scaffold_363 . repeat_region 7669 7676 . ? . description=dust scaffold_363 ensembl protein_coding_gene 126 596 . - . ID=Phyra85910;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_363000001;logic_name=jgi_phyra1 scaffold_363 ensembl transcript 126 596 . - . ID=Phyra85910;Parent=Phyra85910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_363 . CDS 126 596 . - 0 ID=Phyra85910;Parent=Phyra85910;rank=1 scaffold_363 . exon 126 596 . - . ID=Phyra85910.1;Parent=Phyra85910;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_362 1 15553 scaffold_362 . repeat_region 1022 2287 . ? . description=dust scaffold_362 . repeat_region 3922 5130 . ? . description=dust scaffold_362 . repeat_region 5764 5934 . - . description=GypsyPi-1c_I-int scaffold_362 . repeat_region 5935 6075 . - . description=GypsyPi-1c_LTR scaffold_362 . repeat_region 6556 6568 . ? . description=dust scaffold_362 . biological_region 7959 7960 0.999 - . logic_name=eponine scaffold_362 . repeat_region 10893 10964 . ? . description=trf scaffold_362 . repeat_region 12478 12497 . ? . description=trf scaffold_362 . repeat_region 12677 12730 . ? . description=trf scaffold_362 . repeat_region 12683 12742 . ? . description=trf scaffold_362 ensembl protein_coding_gene 9467 10636 . + . ID=Phyra85909;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_362000001;logic_name=jgi_phyra1 scaffold_362 ensembl transcript 9467 10636 . + . ID=Phyra85909;Parent=Phyra85909;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_362 . CDS 9467 10636 . + 0 ID=Phyra85909;Parent=Phyra85909;rank=1 scaffold_362 . exon 9467 10636 . + . ID=Phyra85909.1;Parent=Phyra85909;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_360 1 15589 scaffold_360 . biological_region 591 594 0.999 + . logic_name=eponine scaffold_360 . biological_region 678 685 0.999 - . logic_name=eponine scaffold_360 . repeat_region 1771 6740 . ? . description=dust scaffold_360 . repeat_region 14918 14987 . ? . description=trf scaffold_360 . repeat_region 14975 15016 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_371 1 15596 scaffold_371 . biological_region 1844 1847 0.999 + . logic_name=eponine scaffold_371 . biological_region 2004 2006 0.999 - . logic_name=eponine scaffold_371 . repeat_region 4710 5199 . ? . description=dust scaffold_371 ensembl protein_coding_gene 1900 3444 . + . ID=Phyra85917;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_371000001;logic_name=jgi_phyra1 scaffold_371 ensembl transcript 1900 3444 . + . ID=Phyra85917;Parent=Phyra85917;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_371 . CDS 1900 3444 . + 0 ID=Phyra85917;Parent=Phyra85917;rank=1 scaffold_371 . exon 1900 3444 . + . ID=Phyra85917.1;Parent=Phyra85917;constitutive=1;rank=1 scaffold_371 ensembl protein_coding_gene 4198 4635 . - . ID=Phyra85918;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_371000002;logic_name=jgi_phyra1 scaffold_371 ensembl transcript 4198 4635 . - . ID=Phyra85918;Parent=Phyra85918;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_371 . CDS 4198 4635 . - 0 ID=Phyra85918;Parent=Phyra85918;rank=1 scaffold_371 . exon 4198 4635 . - . ID=Phyra85918.1;Parent=Phyra85918;constitutive=1;rank=1 scaffold_371 ensembl protein_coding_gene 5391 5885 . + . ID=Phyra85919;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_371000003;logic_name=jgi_phyra1 scaffold_371 ensembl transcript 5391 5885 . + . ID=Phyra85919;Parent=Phyra85919;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_371 . CDS 5391 5885 . + 0 ID=Phyra85919;Parent=Phyra85919;rank=1 scaffold_371 . exon 5391 5885 . + . ID=Phyra85919.1;Parent=Phyra85919;constitutive=1;rank=1 scaffold_371 ensembl protein_coding_gene 8809 9660 . - . ID=Phyra85920;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_371000004;logic_name=jgi_phyra1 scaffold_371 ensembl transcript 8809 9660 . - . ID=Phyra85920;Parent=Phyra85920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_371 . CDS 8809 9660 . - 0 ID=Phyra85920;Parent=Phyra85920;rank=1 scaffold_371 . exon 8809 9660 . - . ID=Phyra85920.1;Parent=Phyra85920;constitutive=1;rank=1 scaffold_371 ensembl protein_coding_gene 10137 12212 . + . ID=Phyra85921;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_371000005;logic_name=jgi_phyra1 scaffold_371 ensembl transcript 10137 12212 . + . ID=Phyra85921;Parent=Phyra85921;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_371 . CDS 10137 10407 . + 0 ID=Phyra85921;Parent=Phyra85921;rank=1 scaffold_371 . exon 10137 10407 . + . ID=Phyra85921.1;Parent=Phyra85921;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_371 . CDS 10436 11351 . + 0 ID=Phyra85921;Parent=Phyra85921;rank=2 scaffold_371 . exon 10436 11351 . + . ID=Phyra85921.2;Parent=Phyra85921;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_371 . CDS 11439 11737 . + 0 ID=Phyra85921;Parent=Phyra85921;rank=3 scaffold_371 . exon 11439 11737 . + . ID=Phyra85921.3;Parent=Phyra85921;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_371 . CDS 12013 12212 . + 0 ID=Phyra85921;Parent=Phyra85921;rank=4 scaffold_371 . exon 12013 12212 . + . ID=Phyra85921.4;Parent=Phyra85921;constitutive=1;ensembl_phase=1;rank=4 ##gff-version 3 ##sequence-region scaffold_357 1 15724 scaffold_357 . biological_region 236 239 0.999 - . logic_name=eponine scaffold_357 . repeat_region 1071 1119 . ? . description=trf scaffold_357 . repeat_region 1125 1184 . ? . description=dust scaffold_357 . repeat_region 1442 1535 . ? . description=trf scaffold_357 . biological_region 1908 1915 0.999 + . logic_name=eponine scaffold_357 . biological_region 1966 1969 0.999 - . logic_name=eponine scaffold_357 . repeat_region 2114 7593 . ? . description=dust scaffold_357 ensembl protein_coding_gene 1179 2114 . - . ID=Phyra47906;biotype=protein_coding;external_name=gwEuk.357.3.1;logic_name=jgi_phyra1 scaffold_357 ensembl transcript 1179 2114 . - . ID=Phyra47906;Parent=Phyra47906;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_357 . CDS 1179 2114 . - 0 ID=Phyra47906;Parent=Phyra47906;rank=1 scaffold_357 . exon 1179 2114 . - . ID=Phyra47906.1;Parent=Phyra47906;constitutive=1;rank=1 scaffold_357 ensembl protein_coding_gene 7682 8549 . + . ID=Phyra85904;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_357000002;logic_name=jgi_phyra1 scaffold_357 ensembl transcript 7682 8549 . + . ID=Phyra85904;Parent=Phyra85904;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_357 . CDS 7682 7909 . + 0 ID=Phyra85904;Parent=Phyra85904;rank=1 scaffold_357 . exon 7682 7909 . + . ID=Phyra85904.1;Parent=Phyra85904;constitutive=1;rank=1 scaffold_357 . CDS 7960 8414 . + 0 ID=Phyra85904;Parent=Phyra85904;rank=2 scaffold_357 . CDS 8528 8549 . + 0 ID=Phyra85904;Parent=Phyra85904;rank=3 scaffold_357 . repeat_region 7959 8633 . + . description=GypsyPi-1c_I-int scaffold_357 . exon 7960 8414 . + . ID=Phyra85904.2;Parent=Phyra85904;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_357 . exon 8528 8549 . + . ID=Phyra85904.3;Parent=Phyra85904;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_358 1 15729 scaffold_358 . repeat_region 5 2138 . - . description=GypsyPi-1c_I-int scaffold_358 . repeat_region 2407 7231 . ? . description=dust scaffold_358 ensembl protein_coding_gene 20 2164 . - . ID=Phyra85905;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_358000001;logic_name=jgi_phyra1 scaffold_358 ensembl transcript 20 2164 . - . ID=Phyra85905;Parent=Phyra85905;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_358 . CDS 20 2164 . - 0 ID=Phyra85905;Parent=Phyra85905;rank=1 scaffold_358 . exon 20 2164 . - . ID=Phyra85905.1;Parent=Phyra85905;constitutive=1;rank=1 scaffold_358 . repeat_region 9877 9919 . ? . description=trf scaffold_358 . biological_region 13313 13313 0.999 - . logic_name=eponine scaffold_358 ensembl protein_coding_gene 10562 12206 . - . ID=Phyra85906;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_358000002;logic_name=jgi_phyra1 scaffold_358 ensembl transcript 10562 12206 . - . ID=Phyra85906;Parent=Phyra85906;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_358 . CDS 10562 10583 . - 0 ID=Phyra85906;Parent=Phyra85906;rank=3 scaffold_358 . exon 10562 10583 . - . ID=Phyra85906.3;Parent=Phyra85906;constitutive=1;ensembl_phase=2;rank=3 scaffold_358 . CDS 10871 12155 . - 0 ID=Phyra85906;Parent=Phyra85906;rank=2 scaffold_358 . exon 10871 12155 . - . ID=Phyra85906.2;Parent=Phyra85906;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_358 . CDS 12182 12206 . - 0 ID=Phyra85906;Parent=Phyra85906;rank=1 scaffold_358 . exon 12182 12206 . - . ID=Phyra85906.1;Parent=Phyra85906;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_356 1 15767 scaffold_356 . repeat_region 1047 6855 . ? . description=dust scaffold_356 . repeat_region 8019 8054 . ? . description=trf scaffold_356 . repeat_region 8551 8858 . - . description=GypsyPi-1c_LTR scaffold_356 . biological_region 15118 15119 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_355 1 15848 scaffold_355 . repeat_region 744 1049 . - . description=GypsyPi-1c_LTR scaffold_355 . repeat_region 1467 5790 . ? . description=dust scaffold_355 . repeat_region 6125 6167 . ? . description=trf scaffold_355 ensembl protein_coding_gene 5795 6013 . + . ID=Phyra47902;biotype=protein_coding;external_name=gwEuk.355.1.1;logic_name=jgi_phyra1 scaffold_355 ensembl transcript 5795 6013 . + . ID=Phyra47902;Parent=Phyra47902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_355 . CDS 5795 6013 . + 0 ID=Phyra47902;Parent=Phyra47902;rank=1 scaffold_355 . exon 5795 6013 . + . ID=Phyra47902.1;Parent=Phyra47902;constitutive=1;rank=1 scaffold_355 . biological_region 15526 15529 0.999 + . logic_name=eponine scaffold_355 . biological_region 15615 15619 0.999 - . logic_name=eponine scaffold_355 ensembl protein_coding_gene 14133 15806 . - . ID=Phyra85902;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_355000001;logic_name=jgi_phyra1 scaffold_355 ensembl transcript 14133 15806 . - . ID=Phyra85902;Parent=Phyra85902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_355 . CDS 14133 14194 . - 0 ID=Phyra85902;Parent=Phyra85902;rank=6 scaffold_355 . exon 14133 14194 . - . ID=Phyra85902.6;Parent=Phyra85902;constitutive=1;ensembl_phase=1;rank=6 scaffold_355 . CDS 14315 14339 . - 0 ID=Phyra85902;Parent=Phyra85902;rank=5 scaffold_355 . exon 14315 14339 . - . ID=Phyra85902.5;Parent=Phyra85902;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_355 . CDS 14532 14694 . - 0 ID=Phyra85902;Parent=Phyra85902;rank=4 scaffold_355 . exon 14532 14694 . - . ID=Phyra85902.4;Parent=Phyra85902;constitutive=1;ensembl_phase=2;rank=4 scaffold_355 . CDS 14766 15410 . - 0 ID=Phyra85902;Parent=Phyra85902;rank=3 scaffold_355 . exon 14766 15410 . - . ID=Phyra85902.3;Parent=Phyra85902;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_355 . CDS 15528 15628 . - 0 ID=Phyra85902;Parent=Phyra85902;rank=2 scaffold_355 . exon 15528 15628 . - . ID=Phyra85902.2;Parent=Phyra85902;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_355 . CDS 15804 15806 . - 0 ID=Phyra85902;Parent=Phyra85902;rank=1 scaffold_355 . exon 15804 15806 . - . ID=Phyra85902.1;Parent=Phyra85902;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_353 1 15987 scaffold_353 . repeat_region 206 2511 . + . description=GypsyPi-1c_I-int scaffold_353 . repeat_region 2798 3018 . + . description=GypsyPi-1c_I-int scaffold_353 . repeat_region 3274 3285 . ? . description=dust scaffold_353 . biological_region 3966 3971 0.999 + . logic_name=eponine scaffold_353 . biological_region 4150 4156 0.999 + . logic_name=eponine scaffold_353 . repeat_region 6087 6094 . ? . description=dust scaffold_353 . repeat_region 6720 6873 . + . description=(ATG)n scaffold_353 . repeat_region 6730 6799 . ? . description=trf scaffold_353 . repeat_region 6762 6814 . ? . description=trf scaffold_353 . repeat_region 6801 6865 . ? . description=trf scaffold_353 . repeat_region 6895 6969 . + . description=GypsyPi-1c_I-int scaffold_353 . biological_region 7356 7356 0.999 + . logic_name=eponine scaffold_353 ensembl protein_coding_gene 163 2793 . + . ID=Phyra85896;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_353000001;logic_name=jgi_phyra1 scaffold_353 ensembl transcript 163 2793 . + . ID=Phyra85896;Parent=Phyra85896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_353 . exon 163 661 . + . ID=Phyra85896.1;Parent=Phyra85896;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_353 . CDS 165 661 . + 0 ID=Phyra85896;Parent=Phyra85896;rank=1 scaffold_353 . CDS 734 893 . + 0 ID=Phyra85896;Parent=Phyra85896;rank=2 scaffold_353 . exon 734 893 . + . ID=Phyra85896.2;Parent=Phyra85896;constitutive=1;ensembl_phase=2;rank=2 scaffold_353 . CDS 957 1168 . + 0 ID=Phyra85896;Parent=Phyra85896;rank=3 scaffold_353 . exon 957 1168 . + . ID=Phyra85896.3;Parent=Phyra85896;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_353 . CDS 1728 1920 . + 0 ID=Phyra85896;Parent=Phyra85896;rank=4 scaffold_353 . exon 1728 1920 . + . ID=Phyra85896.4;Parent=Phyra85896;constitutive=1;ensembl_phase=2;rank=4 scaffold_353 . CDS 2257 2510 . + 0 ID=Phyra85896;Parent=Phyra85896;rank=5 scaffold_353 . exon 2257 2510 . + . ID=Phyra85896.5;Parent=Phyra85896;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_353 . CDS 2598 2793 . + 0 ID=Phyra85896;Parent=Phyra85896;rank=6 scaffold_353 . exon 2598 2793 . + . ID=Phyra85896.6;Parent=Phyra85896;constitutive=1;ensembl_phase=2;rank=6 scaffold_353 ensembl protein_coding_gene 3036 4628 . - . ID=Phyra85897;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_353000002;logic_name=jgi_phyra1 scaffold_353 ensembl transcript 3036 4628 . - . ID=Phyra85897;Parent=Phyra85897;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_353 . CDS 3036 3233 . - 0 ID=Phyra85897;Parent=Phyra85897;rank=6 scaffold_353 . exon 3036 3233 . - . ID=Phyra85897.6;Parent=Phyra85897;constitutive=1;rank=6 scaffold_353 . CDS 3300 3427 . - 0 ID=Phyra85897;Parent=Phyra85897;rank=5 scaffold_353 . exon 3300 3427 . - . ID=Phyra85897.5;Parent=Phyra85897;constitutive=1;ensembl_phase=1;rank=5 scaffold_353 . CDS 3464 3661 . - 0 ID=Phyra85897;Parent=Phyra85897;rank=4 scaffold_353 . exon 3464 3661 . - . ID=Phyra85897.4;Parent=Phyra85897;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_353 . CDS 3686 3795 . - 0 ID=Phyra85897;Parent=Phyra85897;rank=3 scaffold_353 . exon 3686 3795 . - . ID=Phyra85897.3;Parent=Phyra85897;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_353 . CDS 3911 4328 . - 0 ID=Phyra85897;Parent=Phyra85897;rank=2 scaffold_353 . exon 3911 4328 . - . ID=Phyra85897.2;Parent=Phyra85897;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_353 . CDS 4364 4628 . - 0 ID=Phyra85897;Parent=Phyra85897;rank=1 scaffold_353 . exon 4364 4628 . - . ID=Phyra85897.1;Parent=Phyra85897;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_353 ensembl protein_coding_gene 5119 7312 . + . ID=Phyra85898;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_353000003;logic_name=jgi_phyra1 scaffold_353 ensembl transcript 5119 7312 . + . ID=Phyra85898;Parent=Phyra85898;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_353 . CDS 5119 5295 . + 0 ID=Phyra85898;Parent=Phyra85898;rank=1 scaffold_353 . exon 5119 5295 . + . ID=Phyra85898.1;Parent=Phyra85898;constitutive=1;rank=1 scaffold_353 . CDS 5340 5910 . + 0 ID=Phyra85898;Parent=Phyra85898;rank=2 scaffold_353 . exon 5340 5910 . + . ID=Phyra85898.2;Parent=Phyra85898;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_353 . CDS 5997 6059 . + 0 ID=Phyra85898;Parent=Phyra85898;rank=3 scaffold_353 . exon 5997 6059 . + . ID=Phyra85898.3;Parent=Phyra85898;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_353 . CDS 6154 7140 . + 0 ID=Phyra85898;Parent=Phyra85898;rank=4 scaffold_353 . exon 6154 7140 . + . ID=Phyra85898.4;Parent=Phyra85898;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_353 . CDS 7224 7312 . + 0 ID=Phyra85898;Parent=Phyra85898;rank=5 scaffold_353 . exon 7224 7312 . + . ID=Phyra85898.5;Parent=Phyra85898;constitutive=1;ensembl_phase=1;rank=5 scaffold_353 ensembl protein_coding_gene 8192 10136 . - . ID=Phyra85899;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_353000004;logic_name=jgi_phyra1 scaffold_353 ensembl transcript 8192 10136 . - . ID=Phyra85899;Parent=Phyra85899;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_353 . CDS 8192 8996 . - 0 ID=Phyra85899;Parent=Phyra85899;rank=2 scaffold_353 . exon 8192 8996 . - . ID=Phyra85899.2;Parent=Phyra85899;constitutive=1;ensembl_phase=2;rank=2 scaffold_353 . CDS 9058 10136 . - 0 ID=Phyra85899;Parent=Phyra85899;rank=1 scaffold_353 . exon 9058 10136 . - . ID=Phyra85899.1;Parent=Phyra85899;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_353 ensembl protein_coding_gene 14372 15975 . + . ID=Phyra85900;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_353000005;logic_name=jgi_phyra1 scaffold_353 ensembl transcript 14372 15975 . + . ID=Phyra85900;Parent=Phyra85900;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_353 . CDS 14372 15975 . + 0 ID=Phyra85900;Parent=Phyra85900;rank=1 scaffold_353 . exon 14372 15975 . + . ID=Phyra85900.1;Parent=Phyra85900;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_359 1 15995 scaffold_359 . repeat_region 970 5819 . ? . description=dust scaffold_359 . repeat_region 6730 6779 . ? . description=dust scaffold_359 . repeat_region 7488 7498 . ? . description=dust scaffold_359 . repeat_region 8081 8420 . - . description=Gypsy-1-I_PI-int scaffold_359 . biological_region 14157 14157 0.999 + . logic_name=eponine scaffold_359 ensembl protein_coding_gene 12139 12797 . + . ID=Phyra85907;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_359000001;logic_name=jgi_phyra1 scaffold_359 ensembl transcript 12139 12797 . + . ID=Phyra85907;Parent=Phyra85907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_359 . CDS 12139 12571 . + 0 ID=Phyra85907;Parent=Phyra85907;rank=1 scaffold_359 . exon 12139 12571 . + . ID=Phyra85907.1;Parent=Phyra85907;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_359 . CDS 12604 12797 . + 0 ID=Phyra85907;Parent=Phyra85907;rank=2 scaffold_359 . exon 12604 12797 . + . ID=Phyra85907.2;Parent=Phyra85907;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_217 1 16018 scaffold_217 . repeat_region 846 6494 . ? . description=dust scaffold_217 . biological_region 8460 8461 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_354 1 16039 scaffold_354 . repeat_region 591 630 . ? . description=trf scaffold_354 . repeat_region 2744 2751 . ? . description=dust scaffold_354 . repeat_region 3239 6372 . ? . description=dust scaffold_354 . repeat_region 6543 6768 . + . description=GypsyPi-1c_LTR scaffold_354 . repeat_region 6769 8010 . + . description=GypsyPi-1c_I-int scaffold_354 . biological_region 7677 7682 0.999 + . logic_name=eponine scaffold_354 ensembl protein_coding_gene 510 967 . - . ID=Phyra47897;biotype=protein_coding;external_name=gwEuk.354.1.1;logic_name=jgi_phyra1 scaffold_354 ensembl transcript 510 967 . - . ID=Phyra47897;Parent=Phyra47897;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_354 . CDS 510 588 . - 0 ID=Phyra47897;Parent=Phyra47897;rank=3 scaffold_354 . exon 510 588 . - . ID=Phyra47897.3;Parent=Phyra47897;constitutive=1;ensembl_phase=2;rank=3 scaffold_354 . CDS 658 763 . - 0 ID=Phyra47897;Parent=Phyra47897;rank=2 scaffold_354 . exon 658 763 . - . ID=Phyra47897.2;Parent=Phyra47897;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_354 . CDS 841 967 . - 0 ID=Phyra47897;Parent=Phyra47897;rank=1 scaffold_354 . exon 841 967 . - . ID=Phyra47897.1;Parent=Phyra47897;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_350 1 16067 scaffold_350 . repeat_region 699 730 . ? . description=trf scaffold_350 . repeat_region 780 815 . ? . description=trf scaffold_350 . repeat_region 814 884 . ? . description=trf scaffold_350 . repeat_region 832 899 . ? . description=trf scaffold_350 . repeat_region 863 926 . ? . description=trf scaffold_350 . repeat_region 1202 1244 . ? . description=trf scaffold_350 . biological_region 1444 1446 0.999 - . logic_name=eponine scaffold_350 . repeat_region 1506 1513 . ? . description=dust scaffold_350 . repeat_region 2536 2975 . + . description=GypsyPi-1c_I-int scaffold_350 . repeat_region 4637 4645 . ? . description=dust scaffold_350 . repeat_region 5490 5499 . ? . description=dust scaffold_350 . repeat_region 5874 5923 . ? . description=dust scaffold_350 . repeat_region 7423 7431 . ? . description=dust scaffold_350 ensembl protein_coding_gene 696 1499 . - . ID=Phyra85893;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_350000001;logic_name=jgi_phyra1 scaffold_350 ensembl transcript 696 1499 . - . ID=Phyra85893;Parent=Phyra85893;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_350 . CDS 696 1499 . - 0 ID=Phyra85893;Parent=Phyra85893;rank=1 scaffold_350 . exon 696 1499 . - . ID=Phyra85893.1;Parent=Phyra85893;constitutive=1;rank=1 scaffold_350 . repeat_region 10645 10962 . - . description=GypsyPi-1c_LTR scaffold_350 . repeat_region 15048 15090 . + . description=(TCCG)n scaffold_350 ensembl tRNA_gene 14121 14191 . - . ID=EPrPRAG00000000076;biotype=tRNA;description=tRNA-Gly for anticodon UCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_350 ensembl transcript 14121 14191 . - . ID=EPrPRAT00000000076;Parent=EPrPRAG00000000076;biotype=tRNA;logic_name=ncrna_eg scaffold_350 ensembl tRNA_gene 14546 14616 . - . ID=EPrPRAG00000000150;biotype=tRNA;description=tRNA-Gly for anticodon UCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_350 ensembl transcript 14546 14616 . - . ID=EPrPRAT00000000150;Parent=EPrPRAG00000000150;biotype=tRNA;logic_name=ncrna_eg scaffold_350 . exon 14121 14191 . - . ID=EPrPRAE00000000076;Parent=EPrPRAT00000000076;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_350 . exon 14546 14616 . - . ID=EPrPRAE00000000150;Parent=EPrPRAT00000000150;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_350 ensembl protein_coding_gene 11349 12239 . - . ID=Phyra85894;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_350000002;logic_name=jgi_phyra1 scaffold_350 ensembl transcript 11349 12239 . - . ID=Phyra85894;Parent=Phyra85894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_350 . CDS 11349 12239 . - 0 ID=Phyra85894;Parent=Phyra85894;rank=1 scaffold_350 . exon 11349 12239 . - . ID=Phyra85894.1;Parent=Phyra85894;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_351 1 16097 scaffold_351 . repeat_region 1331 1339 . ? . description=dust scaffold_351 . repeat_region 3606 5974 . ? . description=dust scaffold_351 ensembl protein_coding_gene 1485 2527 . + . ID=Phyra85895;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_351000001;logic_name=jgi_phyra1 scaffold_351 ensembl transcript 1485 2527 . + . ID=Phyra85895;Parent=Phyra85895;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_351 . CDS 1485 1487 . + 0 ID=Phyra85895;Parent=Phyra85895;rank=1 scaffold_351 . exon 1485 1487 . + . ID=Phyra85895.1;Parent=Phyra85895;constitutive=1;rank=1 scaffold_351 . CDS 1552 2242 . + 0 ID=Phyra85895;Parent=Phyra85895;rank=2 scaffold_351 . exon 1552 2242 . + . ID=Phyra85895.2;Parent=Phyra85895;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_351 . CDS 2364 2527 . + 0 ID=Phyra85895;Parent=Phyra85895;rank=3 scaffold_351 . exon 2364 2527 . + . ID=Phyra85895.3;Parent=Phyra85895;constitutive=1;ensembl_phase=1;rank=3 scaffold_351 . biological_region 8836 8840 0.999 + . logic_name=eponine scaffold_351 . biological_region 8976 8978 0.999 - . logic_name=eponine scaffold_351 . repeat_region 13889 13946 . ? . description=trf scaffold_351 . biological_region 13910 13917 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_352 1 16187 scaffold_352 . repeat_region 1713 1722 . ? . description=dust scaffold_352 . repeat_region 2599 2607 . ? . description=dust scaffold_352 . repeat_region 4009 4039 . ? . description=trf scaffold_352 . repeat_region 6825 8123 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_349 1 16299 scaffold_349 . biological_region 267 268 0.999 - . logic_name=eponine scaffold_349 . repeat_region 1186 1237 . ? . description=dust scaffold_349 . repeat_region 1243 6575 . ? . description=dust scaffold_349 . repeat_region 7050 9077 . + . description=GypsyPi-1c_I-int scaffold_349 ensembl protein_coding_gene 6772 7650 . + . ID=Phyra85892;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_349000001;logic_name=jgi_phyra1 scaffold_349 ensembl transcript 6772 7650 . + . ID=Phyra85892;Parent=Phyra85892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_349 . CDS 6772 7650 . + 0 ID=Phyra85892;Parent=Phyra85892;rank=1 scaffold_349 . exon 6772 7650 . + . ID=Phyra85892.1;Parent=Phyra85892;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_348 1 16360 scaffold_348 . repeat_region 32 298 . - . description=GypsyPi-1c_I-int scaffold_348 . biological_region 133 135 0.999 - . logic_name=eponine scaffold_348 . biological_region 778 779 0.999 - . logic_name=eponine scaffold_348 . biological_region 830 834 0.999 - . logic_name=eponine scaffold_348 . biological_region 907 909 0.999 - . logic_name=eponine scaffold_348 . biological_region 958 960 0.999 - . logic_name=eponine scaffold_348 . repeat_region 2190 3592 . ? . description=dust scaffold_348 . repeat_region 5420 5428 . ? . description=dust scaffold_348 . repeat_region 7909 7945 . ? . description=trf scaffold_348 ensembl protein_coding_gene 68 622 . - . ID=Phyra85891;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_348000001;logic_name=jgi_phyra1 scaffold_348 ensembl transcript 68 622 . - . ID=Phyra85891;Parent=Phyra85891;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_348 . CDS 68 622 . - 0 ID=Phyra85891;Parent=Phyra85891;rank=1 scaffold_348 . exon 68 622 . - . ID=Phyra85891.1;Parent=Phyra85891;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_347 1 16616 scaffold_347 . repeat_region 852 5364 . ? . description=dust scaffold_347 ensembl protein_coding_gene 6452 7597 . + . ID=Phyra47701;biotype=protein_coding;external_name=gwEuk.347.5.1;logic_name=jgi_phyra1 scaffold_347 ensembl transcript 6452 7597 . + . ID=Phyra47701;Parent=Phyra47701;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_347 . CDS 6452 7408 . + 0 ID=Phyra47701;Parent=Phyra47701;rank=1 scaffold_347 . exon 6452 7408 . + . ID=Phyra47701.1;Parent=Phyra47701;constitutive=1;rank=1 scaffold_347 . CDS 7478 7597 . + 0 ID=Phyra47701;Parent=Phyra47701;rank=2 scaffold_347 . exon 7478 7597 . + . ID=Phyra47701.2;Parent=Phyra47701;constitutive=1;rank=2 scaffold_347 . biological_region 15104 15104 0.999 + . logic_name=eponine scaffold_347 ensembl protein_coding_gene 8542 9686 . - . ID=Phyra85888;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_347000002;logic_name=jgi_phyra1 scaffold_347 ensembl transcript 8542 9686 . - . ID=Phyra85888;Parent=Phyra85888;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_347 . CDS 8542 8583 . - 0 ID=Phyra85888;Parent=Phyra85888;rank=2 scaffold_347 . exon 8542 8583 . - . ID=Phyra85888.2;Parent=Phyra85888;constitutive=1;rank=2 scaffold_347 . CDS 8610 9686 . - 0 ID=Phyra85888;Parent=Phyra85888;rank=1 scaffold_347 . exon 8610 9686 . - . ID=Phyra85888.1;Parent=Phyra85888;constitutive=1;rank=1 scaffold_347 ensembl protein_coding_gene 12132 12677 . + . ID=Phyra85889;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_347000003;logic_name=jgi_phyra1 scaffold_347 ensembl transcript 12132 12677 . + . ID=Phyra85889;Parent=Phyra85889;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_347 . CDS 12132 12677 . + 0 ID=Phyra85889;Parent=Phyra85889;rank=1 scaffold_347 . exon 12132 12677 . + . ID=Phyra85889.1;Parent=Phyra85889;constitutive=1;rank=1 scaffold_347 ensembl protein_coding_gene 12996 16587 . + . ID=Phyra85890;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_347000004;logic_name=jgi_phyra1 scaffold_347 ensembl transcript 12996 16587 . + . ID=Phyra85890;Parent=Phyra85890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_347 . CDS 12996 15716 . + 0 ID=Phyra85890;Parent=Phyra85890;rank=1 scaffold_347 . exon 12996 15716 . + . ID=Phyra85890.1;Parent=Phyra85890;constitutive=1;rank=1 scaffold_347 . CDS 15736 16587 . + 0 ID=Phyra85890;Parent=Phyra85890;rank=2 scaffold_347 . exon 15736 16587 . + . ID=Phyra85890.2;Parent=Phyra85890;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_323 1 16620 scaffold_323 . repeat_region 701 1590 . ? . description=dust scaffold_323 . biological_region 1667 1671 0.999 + . logic_name=eponine scaffold_323 . biological_region 2528 2531 0.999 + . logic_name=eponine scaffold_323 . biological_region 3152 3154 0.999 + . logic_name=eponine scaffold_323 . biological_region 3597 3599 0.999 + . logic_name=eponine scaffold_323 . repeat_region 4595 4603 . ? . description=dust scaffold_323 . repeat_region 5172 5247 . ? . description=trf scaffold_323 . repeat_region 5256 5826 . ? . description=dust scaffold_323 . biological_region 6035 6038 0.999 + . logic_name=eponine scaffold_323 . biological_region 6200 6201 0.999 + . logic_name=eponine scaffold_323 . biological_region 6306 6310 0.999 + . logic_name=eponine scaffold_323 . repeat_region 6740 9917 . ? . description=dust scaffold_323 ensembl snRNA_gene 6478 6667 . - . ID=EPrPRAG00000000080;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_323 ensembl snRNA 6478 6667 . - . ID=EPrPRAT00000000080;Parent=EPrPRAG00000000080;biotype=snRNA;logic_name=ncrna_eg scaffold_323 . exon 6478 6667 . - . ID=EPrPRAE00000000080;Parent=EPrPRAT00000000080;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_323 ensembl protein_coding_gene 307 6152 . - . ID=Phyra85823;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_323000001;logic_name=jgi_phyra1 scaffold_323 ensembl transcript 307 6152 . - . ID=Phyra85823;Parent=Phyra85823;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_323 . CDS 307 675 . - 0 ID=Phyra85823;Parent=Phyra85823;rank=4 scaffold_323 . exon 307 675 . - . ID=Phyra85823.4;Parent=Phyra85823;constitutive=1;rank=4 scaffold_323 . CDS 1635 4338 . - 0 ID=Phyra85823;Parent=Phyra85823;rank=3 scaffold_323 . exon 1635 4338 . - . ID=Phyra85823.3;Parent=Phyra85823;constitutive=1;ensembl_phase=2;rank=3 scaffold_323 . CDS 4467 5207 . - 0 ID=Phyra85823;Parent=Phyra85823;rank=2 scaffold_323 . exon 4467 5207 . - . ID=Phyra85823.2;Parent=Phyra85823;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_323 . CDS 5905 6152 . - 0 ID=Phyra85823;Parent=Phyra85823;rank=1 scaffold_323 . exon 5905 6152 . - . ID=Phyra85823.1;Parent=Phyra85823;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_323 ensembl protein_coding_gene 9958 16306 . - . ID=Phyra85824;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_323000002;logic_name=jgi_phyra1 scaffold_323 ensembl transcript 9958 16306 . - . ID=Phyra85824;Parent=Phyra85824;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_323 . CDS 9958 10108 . - 0 ID=Phyra85824;Parent=Phyra85824;rank=6 scaffold_323 . exon 9958 10108 . - . ID=Phyra85824.6;Parent=Phyra85824;constitutive=1;ensembl_phase=2;rank=6 scaffold_323 . CDS 10129 11537 . - 0 ID=Phyra85824;Parent=Phyra85824;rank=5 scaffold_323 . exon 10129 11537 . - . ID=Phyra85824.5;Parent=Phyra85824;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_323 . CDS 11647 12947 . - 0 ID=Phyra85824;Parent=Phyra85824;rank=4 scaffold_323 . exon 11647 12947 . - . ID=Phyra85824.4;Parent=Phyra85824;constitutive=1;ensembl_phase=1;rank=4 scaffold_323 . CDS 13037 13128 . - 0 ID=Phyra85824;Parent=Phyra85824;rank=3 scaffold_323 . exon 13037 13128 . - . ID=Phyra85824.3;Parent=Phyra85824;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_323 . CDS 13384 13427 . - 0 ID=Phyra85824;Parent=Phyra85824;rank=2 scaffold_323 . exon 13384 13427 . - . ID=Phyra85824.2;Parent=Phyra85824;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_323 . CDS 13522 16305 . - 0 ID=Phyra85824;Parent=Phyra85824;rank=1 scaffold_323 . exon 13522 16306 . - . ID=Phyra85824.1;Parent=Phyra85824;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_345 1 16666 scaffold_345 . repeat_region 1177 1280 . ? . description=dust scaffold_345 . repeat_region 4290 6252 . ? . description=dust scaffold_345 . repeat_region 10892 10937 . ? . description=trf scaffold_345 . repeat_region 12481 12519 . ? . description=trf scaffold_345 . repeat_region 12530 12579 . ? . description=trf scaffold_345 ensembl protein_coding_gene 12896 13303 . + . ID=Phyra47692;biotype=protein_coding;external_name=gwEuk.345.1.1;logic_name=jgi_phyra1 scaffold_345 ensembl transcript 12896 13303 . + . ID=Phyra47692;Parent=Phyra47692;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_345 . CDS 12896 13303 . + 0 ID=Phyra47692;Parent=Phyra47692;rank=1 scaffold_345 . exon 12896 13303 . + . ID=Phyra47692.1;Parent=Phyra47692;constitutive=1;rank=1 scaffold_345 ensembl protein_coding_gene 9752 11565 . + . ID=Phyra85884;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_345000001;logic_name=jgi_phyra1 scaffold_345 ensembl transcript 9752 11565 . + . ID=Phyra85884;Parent=Phyra85884;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_345 . CDS 9752 10084 . + 0 ID=Phyra85884;Parent=Phyra85884;rank=1 scaffold_345 . exon 9752 10084 . + . ID=Phyra85884.1;Parent=Phyra85884;constitutive=1;rank=1 scaffold_345 . CDS 10195 10314 . + 0 ID=Phyra85884;Parent=Phyra85884;rank=2 scaffold_345 . exon 10195 10314 . + . ID=Phyra85884.2;Parent=Phyra85884;constitutive=1;rank=2 scaffold_345 . CDS 10349 10693 . + 0 ID=Phyra85884;Parent=Phyra85884;rank=3 scaffold_345 . exon 10349 10693 . + . ID=Phyra85884.3;Parent=Phyra85884;constitutive=1;rank=3 scaffold_345 . CDS 10889 11489 . + 0 ID=Phyra85884;Parent=Phyra85884;rank=4 scaffold_345 . exon 10889 11489 . + . ID=Phyra85884.4;Parent=Phyra85884;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_345 . CDS 11555 11565 . + 0 ID=Phyra85884;Parent=Phyra85884;rank=5 scaffold_345 . exon 11555 11565 . + . ID=Phyra85884.5;Parent=Phyra85884;constitutive=1;ensembl_phase=1;rank=5 scaffold_345 ensembl protein_coding_gene 14505 15453 . - . ID=Phyra85886;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_345000003;logic_name=jgi_phyra1 scaffold_345 ensembl transcript 14505 15453 . - . ID=Phyra85886;Parent=Phyra85886;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_345 . CDS 14505 14581 . - 0 ID=Phyra85886;Parent=Phyra85886;rank=2 scaffold_345 . exon 14505 14581 . - . ID=Phyra85886.2;Parent=Phyra85886;constitutive=1;ensembl_phase=1;rank=2 scaffold_345 . CDS 14694 15453 . - 0 ID=Phyra85886;Parent=Phyra85886;rank=1 scaffold_345 . exon 14694 15453 . - . ID=Phyra85886.1;Parent=Phyra85886;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_343 1 16686 scaffold_343 . repeat_region 3092 3922 . ? . description=dust scaffold_343 . biological_region 3979 3983 0.999 - . logic_name=eponine scaffold_343 . biological_region 4672 4675 0.999 - . logic_name=eponine scaffold_343 . repeat_region 5151 7592 . ? . description=dust scaffold_343 ensembl protein_coding_gene 3977 4421 . - . ID=Phyra47688;biotype=protein_coding;external_name=gwEuk.343.1.1;logic_name=jgi_phyra1 scaffold_343 ensembl transcript 3977 4421 . - . ID=Phyra47688;Parent=Phyra47688;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_343 . CDS 3977 4220 . - 0 ID=Phyra47688;Parent=Phyra47688;rank=2 scaffold_343 . exon 3977 4220 . - . ID=Phyra47688.2;Parent=Phyra47688;constitutive=1;ensembl_phase=2;rank=2 scaffold_343 . CDS 4282 4421 . - 0 ID=Phyra47688;Parent=Phyra47688;rank=1 scaffold_343 . exon 4282 4421 . - . ID=Phyra47688.1;Parent=Phyra47688;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_346 1 16712 scaffold_346 . repeat_region 83 113 . ? . description=trf scaffold_346 . repeat_region 796 6760 . ? . description=dust scaffold_346 . biological_region 13807 13808 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_342 1 16749 scaffold_342 . biological_region 315 318 0.999 - . logic_name=eponine scaffold_342 . repeat_region 1876 6864 . ? . description=dust scaffold_342 . biological_region 7643 7644 0.999 - . logic_name=eponine scaffold_342 ensembl protein_coding_gene 132 1609 . - . ID=Phyra85878;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_342000001;logic_name=jgi_phyra1 scaffold_342 ensembl transcript 132 1609 . - . ID=Phyra85878;Parent=Phyra85878;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_342 . CDS 132 160 . - 0 ID=Phyra85878;Parent=Phyra85878;rank=6 scaffold_342 . exon 132 160 . - . ID=Phyra85878.6;Parent=Phyra85878;constitutive=1;ensembl_phase=1;rank=6 scaffold_342 . CDS 181 268 . - 0 ID=Phyra85878;Parent=Phyra85878;rank=5 scaffold_342 . exon 181 268 . - . ID=Phyra85878.5;Parent=Phyra85878;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_342 . CDS 335 623 . - 0 ID=Phyra85878;Parent=Phyra85878;rank=4 scaffold_342 . exon 335 623 . - . ID=Phyra85878.4;Parent=Phyra85878;constitutive=1;ensembl_phase=2;rank=4 scaffold_342 . CDS 712 863 . - 0 ID=Phyra85878;Parent=Phyra85878;rank=3 scaffold_342 . exon 712 863 . - . ID=Phyra85878.3;Parent=Phyra85878;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_342 . CDS 940 1435 . - 0 ID=Phyra85878;Parent=Phyra85878;rank=2 scaffold_342 . exon 940 1435 . - . ID=Phyra85878.2;Parent=Phyra85878;constitutive=1;ensembl_phase=2;rank=2 scaffold_342 . CDS 1527 1609 . - 0 ID=Phyra85878;Parent=Phyra85878;rank=1 scaffold_342 . exon 1527 1609 . - . ID=Phyra85878.1;Parent=Phyra85878;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_342 ensembl protein_coding_gene 11898 12356 . + . ID=Phyra47681;biotype=protein_coding;external_name=gwEuk.342.4.1;logic_name=jgi_phyra1 scaffold_342 ensembl transcript 11898 12356 . + . ID=Phyra47681;Parent=Phyra47681;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_342 . CDS 11898 12200 . + 0 ID=Phyra47681;Parent=Phyra47681;rank=1 scaffold_342 . exon 11898 12200 . + . ID=Phyra47681.1;Parent=Phyra47681;constitutive=1;rank=1 scaffold_342 . CDS 12267 12356 . + 0 ID=Phyra47681;Parent=Phyra47681;rank=2 scaffold_342 . exon 12267 12356 . + . ID=Phyra47681.2;Parent=Phyra47681;constitutive=1;rank=2 scaffold_342 ensembl protein_coding_gene 12500 12964 . - . ID=Phyra72379;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_342000001;logic_name=jgi_phyra1 scaffold_342 ensembl transcript 12500 12964 . - . ID=Phyra72379;Parent=Phyra72379;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_342 . CDS 12500 12964 . - 0 ID=Phyra72379;Parent=Phyra72379;rank=1 scaffold_342 . exon 12500 12964 . - . ID=Phyra72379.1;Parent=Phyra72379;constitutive=1;rank=1 scaffold_342 ensembl protein_coding_gene 13969 14791 . - . ID=Phyra85881;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_342000004;logic_name=jgi_phyra1 scaffold_342 ensembl transcript 13969 14791 . - . ID=Phyra85881;Parent=Phyra85881;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_342 . CDS 13969 14002 . - 0 ID=Phyra85881;Parent=Phyra85881;rank=2 scaffold_342 . exon 13969 14002 . - . ID=Phyra85881.2;Parent=Phyra85881;constitutive=1;ensembl_phase=2;rank=2 scaffold_342 . CDS 14034 14791 . - 0 ID=Phyra85881;Parent=Phyra85881;rank=1 scaffold_342 . exon 14034 14791 . - . ID=Phyra85881.1;Parent=Phyra85881;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_342 ensembl protein_coding_gene 15343 16398 . - . ID=Phyra85882;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_342000005;logic_name=jgi_phyra1 scaffold_342 ensembl transcript 15343 16398 . - . ID=Phyra85882;Parent=Phyra85882;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_342 . CDS 15343 16398 . - 0 ID=Phyra85882;Parent=Phyra85882;rank=1 scaffold_342 . exon 15343 16398 . - . ID=Phyra85882.1;Parent=Phyra85882;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_341 1 16788 scaffold_341 . biological_region 2523 2527 0.999 + . logic_name=eponine scaffold_341 . repeat_region 6742 6749 . ? . description=dust scaffold_341 ensembl protein_coding_gene 845 2314 . - . ID=Phyra85876;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_341000001;logic_name=jgi_phyra1 scaffold_341 ensembl transcript 845 2314 . - . ID=Phyra85876;Parent=Phyra85876;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_341 . CDS 845 2314 . - 0 ID=Phyra85876;Parent=Phyra85876;rank=1 scaffold_341 . exon 845 2314 . - . ID=Phyra85876.1;Parent=Phyra85876;constitutive=1;rank=1 scaffold_341 ensembl protein_coding_gene 7638 8354 . - . ID=Phyra85877;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_341000002;logic_name=jgi_phyra1 scaffold_341 ensembl transcript 7638 8354 . - . ID=Phyra85877;Parent=Phyra85877;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_341 . CDS 7638 8354 . - 0 ID=Phyra85877;Parent=Phyra85877;rank=1 scaffold_341 . exon 7638 8354 . - . ID=Phyra85877.1;Parent=Phyra85877;constitutive=1;rank=1 scaffold_341 . repeat_region 11168 11196 . ? . description=trf scaffold_341 . repeat_region 14371 14414 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_340 1 16902 scaffold_340 . repeat_region 2129 6797 . ? . description=dust scaffold_340 . repeat_region 7010 7030 . ? . description=trf scaffold_340 . repeat_region 7010 7030 . ? . description=dust scaffold_340 ensembl protein_coding_gene 1004 1855 . - . ID=Phyra85873;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_340000001;logic_name=jgi_phyra1 scaffold_340 ensembl transcript 1004 1855 . - . ID=Phyra85873;Parent=Phyra85873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_340 . CDS 1004 1855 . - 0 ID=Phyra85873;Parent=Phyra85873;rank=1 scaffold_340 . exon 1004 1855 . - . ID=Phyra85873.1;Parent=Phyra85873;constitutive=1;rank=1 scaffold_340 . biological_region 16365 16366 0.999 + . logic_name=eponine scaffold_340 ensembl protein_coding_gene 13795 14746 . - . ID=Phyra85874;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_340000002;logic_name=jgi_phyra1 scaffold_340 ensembl transcript 13795 14746 . - . ID=Phyra85874;Parent=Phyra85874;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_340 . CDS 13795 14607 . - 0 ID=Phyra85874;Parent=Phyra85874;rank=2 scaffold_340 . exon 13795 14607 . - . ID=Phyra85874.2;Parent=Phyra85874;constitutive=1;rank=2 scaffold_340 . CDS 14690 14746 . - 0 ID=Phyra85874;Parent=Phyra85874;rank=1 scaffold_340 . exon 14690 14746 . - . ID=Phyra85874.1;Parent=Phyra85874;constitutive=1;rank=1 scaffold_340 ensembl protein_coding_gene 15641 16548 . - . ID=Phyra85875;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_340000003;logic_name=jgi_phyra1 scaffold_340 ensembl transcript 15641 16548 . - . ID=Phyra85875;Parent=Phyra85875;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_340 . CDS 15641 16546 . - 0 ID=Phyra85875;Parent=Phyra85875;rank=1 scaffold_340 . exon 15641 16548 . - . ID=Phyra85875.1;Parent=Phyra85875;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_338 1 16918 scaffold_338 . biological_region 6550 6554 0.999 - . logic_name=eponine scaffold_338 ensembl protein_coding_gene 805 4037 . + . ID=Phyra85865;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_338000001;logic_name=jgi_phyra1 scaffold_338 ensembl transcript 805 4037 . + . ID=Phyra85865;Parent=Phyra85865;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_338 . CDS 805 1892 . + 0 ID=Phyra85865;Parent=Phyra85865;rank=1 scaffold_338 . exon 805 1892 . + . ID=Phyra85865.1;Parent=Phyra85865;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_338 . CDS 2187 2214 . + 0 ID=Phyra85865;Parent=Phyra85865;rank=2 scaffold_338 . exon 2187 2214 . + . ID=Phyra85865.2;Parent=Phyra85865;constitutive=1;ensembl_phase=2;rank=2 scaffold_338 . CDS 2274 2401 . + 0 ID=Phyra85865;Parent=Phyra85865;rank=3 scaffold_338 . exon 2274 2401 . + . ID=Phyra85865.3;Parent=Phyra85865;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_338 . CDS 2429 2937 . + 0 ID=Phyra85865;Parent=Phyra85865;rank=4 scaffold_338 . exon 2429 2937 . + . ID=Phyra85865.4;Parent=Phyra85865;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_338 . CDS 2997 3117 . + 0 ID=Phyra85865;Parent=Phyra85865;rank=5 scaffold_338 . exon 2997 3117 . + . ID=Phyra85865.5;Parent=Phyra85865;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_338 . CDS 3172 3569 . + 0 ID=Phyra85865;Parent=Phyra85865;rank=6 scaffold_338 . exon 3172 3569 . + . ID=Phyra85865.6;Parent=Phyra85865;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_338 . CDS 3635 3720 . + 0 ID=Phyra85865;Parent=Phyra85865;rank=7 scaffold_338 . exon 3635 3720 . + . ID=Phyra85865.7;Parent=Phyra85865;constitutive=1;ensembl_phase=1;rank=7 scaffold_338 . CDS 3783 4037 . + 0 ID=Phyra85865;Parent=Phyra85865;rank=8 scaffold_338 . exon 3783 4037 . + . ID=Phyra85865.8;Parent=Phyra85865;constitutive=1;rank=8 scaffold_338 ensembl protein_coding_gene 4104 5648 . - . ID=Phyra85866;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_338000002;logic_name=jgi_phyra1 scaffold_338 ensembl transcript 4104 5648 . - . ID=Phyra85866;Parent=Phyra85866;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_338 . CDS 4104 5648 . - 0 ID=Phyra85866;Parent=Phyra85866;rank=1 scaffold_338 . exon 4104 5648 . - . ID=Phyra85866.1;Parent=Phyra85866;constitutive=1;rank=1 scaffold_338 ensembl protein_coding_gene 6328 9264 . + . ID=Phyra97181;biotype=protein_coding;external_name=C_scaffold_338000001;logic_name=jgi_phyra1 scaffold_338 ensembl transcript 6328 9264 . + . ID=Phyra97181;Parent=Phyra97181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_338 . CDS 6328 7659 . + 0 ID=Phyra97181;Parent=Phyra97181;rank=1 scaffold_338 . exon 6328 7659 . + . ID=Phyra97181.1;Parent=Phyra97181;constitutive=1;rank=1 scaffold_338 . CDS 7703 7901 . + 0 ID=Phyra97181;Parent=Phyra97181;rank=2 scaffold_338 . exon 7703 7901 . + . ID=Phyra97181.2;Parent=Phyra97181;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_338 . CDS 8012 8223 . + 0 ID=Phyra97181;Parent=Phyra97181;rank=3 scaffold_338 . exon 8012 8223 . + . ID=Phyra97181.3;Parent=Phyra97181;constitutive=1;ensembl_phase=1;rank=3 scaffold_338 . CDS 8593 8922 . + 0 ID=Phyra97181;Parent=Phyra97181;rank=4 scaffold_338 . CDS 9124 9264 . + 0 ID=Phyra97181;Parent=Phyra97181;rank=5 scaffold_338 ensembl protein_coding_gene 9436 12603 . - . ID=Phyra85868;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_338000004;logic_name=jgi_phyra1 scaffold_338 ensembl transcript 9436 12603 . - . ID=Phyra85868;Parent=Phyra85868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_338 . CDS 9436 12603 . - 0 ID=Phyra85868;Parent=Phyra85868;rank=1 scaffold_338 . exon 9436 12603 . - . ID=Phyra85868.1;Parent=Phyra85868;constitutive=1;rank=1 scaffold_338 ensembl protein_coding_gene 12861 15299 . + . ID=Phyra85869;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_338000005;logic_name=jgi_phyra1 scaffold_338 ensembl transcript 12861 15299 . + . ID=Phyra85869;Parent=Phyra85869;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_338 . CDS 12861 15299 . + 0 ID=Phyra85869;Parent=Phyra85869;rank=1 scaffold_338 . exon 12861 15299 . + . ID=Phyra85869.1;Parent=Phyra85869;constitutive=1;rank=1 scaffold_338 ensembl protein_coding_gene 15495 16031 . - . ID=Phyra85870;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_338000006;logic_name=jgi_phyra1 scaffold_338 ensembl transcript 15495 16031 . - . ID=Phyra85870;Parent=Phyra85870;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_338 . CDS 15495 16031 . - 0 ID=Phyra85870;Parent=Phyra85870;rank=1 scaffold_338 . exon 15495 16031 . - . ID=Phyra85870.1;Parent=Phyra85870;constitutive=1;rank=1 scaffold_338 . exon 8593 8922 . + . ID=Phyra97181.4;Parent=Phyra97181;constitutive=1;rank=4 scaffold_338 . exon 9124 9264 . + . ID=Phyra97181.5;Parent=Phyra97181;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_337 1 16998 scaffold_337 . repeat_region 4524 7273 . ? . description=dust scaffold_337 . biological_region 7633 7636 0.999 + . logic_name=eponine scaffold_337 . biological_region 7667 7668 0.999 + . logic_name=eponine scaffold_337 . biological_region 7686 7688 0.999 - . logic_name=eponine scaffold_337 . biological_region 7761 7763 0.999 + . logic_name=eponine scaffold_337 . repeat_region 8140 8226 . ? . description=trf scaffold_337 . repeat_region 9197 9834 . + . description=GypsyPi-1c_I-int scaffold_337 ensembl protein_coding_gene 8916 9851 . + . ID=Phyra85864;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_337000001;logic_name=jgi_phyra1 scaffold_337 ensembl transcript 8916 9851 . + . ID=Phyra85864;Parent=Phyra85864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_337 . CDS 8916 9851 . + 0 ID=Phyra85864;Parent=Phyra85864;rank=1 scaffold_337 . exon 8916 9851 . + . ID=Phyra85864.1;Parent=Phyra85864;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_335 1 17095 scaffold_335 . repeat_region 1033 1125 . ? . description=trf scaffold_335 . repeat_region 1429 7357 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_336 1 17099 scaffold_336 . repeat_region 1473 1522 . ? . description=dust scaffold_336 . biological_region 2421 2422 0.999 + . logic_name=eponine scaffold_336 . biological_region 2462 2462 0.999 - . logic_name=eponine scaffold_336 . biological_region 2480 2483 0.999 - . logic_name=eponine scaffold_336 . repeat_region 4519 4526 . ? . description=dust scaffold_336 . repeat_region 7111 7120 . ? . description=dust scaffold_336 . biological_region 8329 8333 0.999 + . logic_name=eponine scaffold_336 ensembl protein_coding_gene 3540 4166 . - . ID=Phyra72378;biotype=protein_coding;description=Ribosomal protein L10 [Source:UniProtKB/TrEMBL%3BAcc:A7XKI1];external_name=fgenesh1_pm.C_scaffold_336000001;logic_name=jgi_phyra1 scaffold_336 ensembl transcript 3540 4166 . - . ID=Phyra72378;Parent=Phyra72378;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_336 . CDS 3540 4166 . - 0 ID=Phyra72378;Parent=Phyra72378;rank=1 scaffold_336 . exon 3540 4166 . - . ID=Phyra72378.1;Parent=Phyra72378;constitutive=1;rank=1 scaffold_336 ensembl protein_coding_gene 56 1400 . - . ID=Phyra85860;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_336000001;logic_name=jgi_phyra1 scaffold_336 ensembl transcript 56 1400 . - . ID=Phyra85860;Parent=Phyra85860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_336 . CDS 56 1400 . - 0 ID=Phyra85860;Parent=Phyra85860;rank=1 scaffold_336 . exon 56 1400 . - . ID=Phyra85860.1;Parent=Phyra85860;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_336 ensembl protein_coding_gene 1659 3371 . + . ID=Phyra85861;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_336000002;logic_name=jgi_phyra1 scaffold_336 ensembl transcript 1659 3371 . + . ID=Phyra85861;Parent=Phyra85861;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_336 . CDS 1659 2268 . + 0 ID=Phyra85861;Parent=Phyra85861;rank=1 scaffold_336 . exon 1659 2268 . + . ID=Phyra85861.1;Parent=Phyra85861;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_336 . CDS 2344 2548 . + 0 ID=Phyra85861;Parent=Phyra85861;rank=2 scaffold_336 . exon 2344 2548 . + . ID=Phyra85861.2;Parent=Phyra85861;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_336 . CDS 2618 3371 . + 0 ID=Phyra85861;Parent=Phyra85861;rank=3 scaffold_336 . exon 2618 3371 . + . ID=Phyra85861.3;Parent=Phyra85861;constitutive=1;ensembl_phase=2;rank=3 scaffold_336 ensembl protein_coding_gene 14680 15045 . - . ID=Phyra85863;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_336000004;logic_name=jgi_phyra1 scaffold_336 ensembl transcript 14680 15045 . - . ID=Phyra85863;Parent=Phyra85863;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_336 . CDS 14680 15045 . - 0 ID=Phyra85863;Parent=Phyra85863;rank=1 scaffold_336 . exon 14680 15045 . - . ID=Phyra85863.1;Parent=Phyra85863;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_334 1 17184 scaffold_334 . repeat_region 699 2214 . ? . description=dust scaffold_334 . repeat_region 4537 4582 . + . description=GypsyPi-1c_LTR scaffold_334 . repeat_region 4650 9255 . ? . description=dust scaffold_334 ensembl protein_coding_gene 89 553 . + . ID=Phyra85857;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_334000001;logic_name=jgi_phyra1 scaffold_334 ensembl transcript 89 553 . + . ID=Phyra85857;Parent=Phyra85857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_334 . CDS 89 553 . + 0 ID=Phyra85857;Parent=Phyra85857;rank=1 scaffold_334 . exon 89 553 . + . ID=Phyra85857.1;Parent=Phyra85857;constitutive=1;rank=1 scaffold_334 ensembl protein_coding_gene 4023 4394 . - . ID=Phyra85858;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_334000002;logic_name=jgi_phyra1 scaffold_334 ensembl transcript 4023 4394 . - . ID=Phyra85858;Parent=Phyra85858;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_334 . CDS 4023 4394 . - 0 ID=Phyra85858;Parent=Phyra85858;rank=1 scaffold_334 . exon 4023 4394 . - . ID=Phyra85858.1;Parent=Phyra85858;constitutive=1;rank=1 scaffold_334 . biological_region 16690 16691 0.999 - . logic_name=eponine scaffold_334 ensembl protein_coding_gene 9572 10517 . - . ID=Phyra85859;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_334000003;logic_name=jgi_phyra1 scaffold_334 ensembl transcript 9572 10517 . - . ID=Phyra85859;Parent=Phyra85859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_334 . CDS 9572 9588 . - 0 ID=Phyra85859;Parent=Phyra85859;rank=2 scaffold_334 . exon 9572 9588 . - . ID=Phyra85859.2;Parent=Phyra85859;constitutive=1;ensembl_phase=1;rank=2 scaffold_334 . CDS 9611 10517 . - 0 ID=Phyra85859;Parent=Phyra85859;rank=1 scaffold_334 . exon 9611 10517 . - . ID=Phyra85859.1;Parent=Phyra85859;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_339 1 17336 scaffold_339 . biological_region 540 544 0.999 - . logic_name=eponine scaffold_339 . repeat_region 1802 3155 . ? . description=dust scaffold_339 . repeat_region 5284 5928 . ? . description=dust scaffold_339 . repeat_region 8292 8570 . - . description=GypsyPi-1c_I-int scaffold_339 ensembl pseudogene 3237 4385 . + . ID=Phyra47621;biotype=pseudogene;external_name=gwEuk.339.8.1;logic_name=jgi_phyra1 scaffold_339 ensembl pseudogene 3237 4385 . + . ID=Phyra47621;Parent=Phyra47621;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_339 . exon 3237 4385 . + . ID=Phyra47621.1;Parent=Phyra47621;constitutive=1;rank=1 scaffold_339 ensembl protein_coding_gene 15180 16937 . - . ID=Phyra85872;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_339000002;logic_name=jgi_phyra1 scaffold_339 ensembl transcript 15180 16937 . - . ID=Phyra85872;Parent=Phyra85872;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_339 . CDS 15180 16937 . - 0 ID=Phyra85872;Parent=Phyra85872;rank=1 scaffold_339 . exon 15180 16937 . - . ID=Phyra85872.1;Parent=Phyra85872;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_320 1 17340 scaffold_320 . biological_region 6936 6939 0.999 - . logic_name=eponine scaffold_320 . biological_region 8154 8159 0.999 + . logic_name=eponine scaffold_320 ensembl protein_coding_gene 476 7935 . + . ID=Phyra85813;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_320000001;logic_name=jgi_phyra1 scaffold_320 ensembl transcript 476 7935 . + . ID=Phyra85813;Parent=Phyra85813;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_320 . CDS 476 2687 . + 0 ID=Phyra85813;Parent=Phyra85813;rank=1 scaffold_320 . exon 476 2687 . + . ID=Phyra85813.1;Parent=Phyra85813;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_320 . CDS 2866 2877 . + 0 ID=Phyra85813;Parent=Phyra85813;rank=2 scaffold_320 . exon 2866 2877 . + . ID=Phyra85813.2;Parent=Phyra85813;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_320 . CDS 2981 7935 . + 0 ID=Phyra85813;Parent=Phyra85813;rank=3 scaffold_320 . exon 2981 7935 . + . ID=Phyra85813.3;Parent=Phyra85813;constitutive=1;ensembl_phase=1;rank=3 scaffold_320 ensembl protein_coding_gene 8032 10526 . - . ID=Phyra85814;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_320000002;logic_name=jgi_phyra1 scaffold_320 ensembl transcript 8032 10526 . - . ID=Phyra85814;Parent=Phyra85814;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_320 . CDS 8032 8429 . - 0 ID=Phyra85814;Parent=Phyra85814;rank=4 scaffold_320 . exon 8032 8429 . - . ID=Phyra85814.4;Parent=Phyra85814;constitutive=1;ensembl_phase=1;rank=4 scaffold_320 . CDS 8970 9287 . - 0 ID=Phyra85814;Parent=Phyra85814;rank=3 scaffold_320 . CDS 9350 9695 . - 0 ID=Phyra85814;Parent=Phyra85814;rank=2 scaffold_320 . CDS 9801 10526 . - 0 ID=Phyra85814;Parent=Phyra85814;rank=1 scaffold_320 . repeat_region 8771 8820 . ? . description=dust scaffold_320 . repeat_region 11775 11900 . ? . description=trf scaffold_320 . repeat_region 11819 11867 . ? . description=trf scaffold_320 . repeat_region 11819 12168 . ? . description=trf scaffold_320 . repeat_region 11843 11997 . ? . description=trf scaffold_320 . repeat_region 11876 12168 . ? . description=trf scaffold_320 . repeat_region 11911 12135 . ? . description=trf scaffold_320 . repeat_region 11942 12170 . ? . description=trf scaffold_320 . repeat_region 11975 12045 . ? . description=trf scaffold_320 . repeat_region 12001 12209 . ? . description=trf scaffold_320 . repeat_region 12023 12113 . ? . description=trf scaffold_320 . repeat_region 12091 12137 . ? . description=trf scaffold_320 . repeat_region 12115 12185 . ? . description=trf scaffold_320 . repeat_region 12417 16051 . ? . description=dust scaffold_320 . exon 8970 9287 . - . ID=Phyra85814.3;Parent=Phyra85814;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_320 . exon 9350 9695 . - . ID=Phyra85814.2;Parent=Phyra85814;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_320 . exon 9801 10526 . - . ID=Phyra85814.1;Parent=Phyra85814;constitutive=1;rank=1 scaffold_320 ensembl protein_coding_gene 16437 17294 . + . ID=Phyra85815;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_320000003;logic_name=jgi_phyra1 scaffold_320 ensembl transcript 16437 17294 . + . ID=Phyra85815;Parent=Phyra85815;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_320 . CDS 16437 16647 . + 0 ID=Phyra85815;Parent=Phyra85815;rank=1 scaffold_320 . exon 16437 16647 . + . ID=Phyra85815.1;Parent=Phyra85815;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_320 . CDS 16696 17294 . + 0 ID=Phyra85815;Parent=Phyra85815;rank=2 scaffold_320 . exon 16696 17294 . + . ID=Phyra85815.2;Parent=Phyra85815;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_332 1 17415 scaffold_332 . repeat_region 1153 1185 . ? . description=trf scaffold_332 . repeat_region 8119 8126 . ? . description=dust scaffold_332 ensembl protein_coding_gene 1497 3567 . - . ID=Phyra85842;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_332000001;logic_name=jgi_phyra1 scaffold_332 ensembl transcript 1497 3567 . - . ID=Phyra85842;Parent=Phyra85842;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_332 . CDS 1497 1502 . - 0 ID=Phyra85842;Parent=Phyra85842;rank=3 scaffold_332 . exon 1497 1502 . - . ID=Phyra85842.3;Parent=Phyra85842;constitutive=1;rank=3 scaffold_332 . CDS 1542 2098 . - 0 ID=Phyra85842;Parent=Phyra85842;rank=2 scaffold_332 . exon 1542 2098 . - . ID=Phyra85842.2;Parent=Phyra85842;constitutive=1;ensembl_phase=1;rank=2 scaffold_332 . CDS 2196 3567 . - 0 ID=Phyra85842;Parent=Phyra85842;rank=1 scaffold_332 . exon 2196 3567 . - . ID=Phyra85842.1;Parent=Phyra85842;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_332 ensembl protein_coding_gene 6000 6785 . + . ID=Phyra85843;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_332000002;logic_name=jgi_phyra1 scaffold_332 ensembl transcript 6000 6785 . + . ID=Phyra85843;Parent=Phyra85843;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_332 . CDS 6000 6068 . + 0 ID=Phyra85843;Parent=Phyra85843;rank=1 scaffold_332 . exon 6000 6068 . + . ID=Phyra85843.1;Parent=Phyra85843;constitutive=1;rank=1 scaffold_332 . CDS 6137 6185 . + 0 ID=Phyra85843;Parent=Phyra85843;rank=2 scaffold_332 . exon 6137 6185 . + . ID=Phyra85843.2;Parent=Phyra85843;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_332 . CDS 6348 6427 . + 0 ID=Phyra85843;Parent=Phyra85843;rank=3 scaffold_332 . exon 6348 6427 . + . ID=Phyra85843.3;Parent=Phyra85843;constitutive=1;ensembl_phase=1;rank=3 scaffold_332 . CDS 6513 6785 . + 0 ID=Phyra85843;Parent=Phyra85843;rank=4 scaffold_332 . exon 6513 6785 . + . ID=Phyra85843.4;Parent=Phyra85843;constitutive=1;rank=4 scaffold_332 ensembl protein_coding_gene 7532 8765 . + . ID=Phyra85844;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_332000003;logic_name=jgi_phyra1 scaffold_332 ensembl transcript 7532 8765 . + . ID=Phyra85844;Parent=Phyra85844;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_332 . CDS 7532 7539 . + 0 ID=Phyra85844;Parent=Phyra85844;rank=1 scaffold_332 . exon 7532 7539 . + . ID=Phyra85844.1;Parent=Phyra85844;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_332 . CDS 7596 7821 . + 0 ID=Phyra85844;Parent=Phyra85844;rank=2 scaffold_332 . exon 7596 7821 . + . ID=Phyra85844.2;Parent=Phyra85844;constitutive=1;ensembl_phase=2;rank=2 scaffold_332 . CDS 7893 8072 . + 0 ID=Phyra85844;Parent=Phyra85844;rank=3 scaffold_332 . exon 7893 8072 . + . ID=Phyra85844.3;Parent=Phyra85844;constitutive=1;rank=3 scaffold_332 . CDS 8134 8424 . + 0 ID=Phyra85844;Parent=Phyra85844;rank=4 scaffold_332 . exon 8134 8424 . + . ID=Phyra85844.4;Parent=Phyra85844;constitutive=1;rank=4 scaffold_332 . CDS 8493 8765 . + 0 ID=Phyra85844;Parent=Phyra85844;rank=5 scaffold_332 . exon 8493 8765 . + . ID=Phyra85844.5;Parent=Phyra85844;constitutive=1;rank=5 scaffold_332 . biological_region 9090 9091 0.999 + . logic_name=eponine scaffold_332 . biological_region 9638 9640 0.999 - . logic_name=eponine scaffold_332 . biological_region 10824 10826 0.999 + . logic_name=eponine scaffold_332 . biological_region 10886 10889 0.999 - . logic_name=eponine scaffold_332 . biological_region 13883 13886 0.999 - . logic_name=eponine scaffold_332 . biological_region 15933 15939 0.999 - . logic_name=eponine scaffold_332 ensembl protein_coding_gene 13570 15459 . - . ID=Phyra72376;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_332000001;logic_name=jgi_phyra1 scaffold_332 ensembl transcript 13570 15459 . - . ID=Phyra72376;Parent=Phyra72376;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_332 . CDS 13570 15459 . - 0 ID=Phyra72376;Parent=Phyra72376;rank=1 scaffold_332 . exon 13570 15459 . - . ID=Phyra72376.1;Parent=Phyra72376;constitutive=1;rank=1 scaffold_332 ensembl protein_coding_gene 8990 10189 . + . ID=Phyra85845;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_332000004;logic_name=jgi_phyra1 scaffold_332 ensembl transcript 8990 10189 . + . ID=Phyra85845;Parent=Phyra85845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_332 . CDS 8990 9454 . + 0 ID=Phyra85845;Parent=Phyra85845;rank=1 scaffold_332 . exon 8990 9454 . + . ID=Phyra85845.1;Parent=Phyra85845;constitutive=1;rank=1 scaffold_332 . CDS 9523 9813 . + 0 ID=Phyra85845;Parent=Phyra85845;rank=2 scaffold_332 . exon 9523 9813 . + . ID=Phyra85845.2;Parent=Phyra85845;constitutive=1;rank=2 scaffold_332 . CDS 9896 10189 . + 0 ID=Phyra85845;Parent=Phyra85845;rank=3 scaffold_332 . exon 9896 10189 . + . ID=Phyra85845.3;Parent=Phyra85845;constitutive=1;rank=3 scaffold_332 ensembl protein_coding_gene 10579 11683 . - . ID=Phyra85846;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_332000005;logic_name=jgi_phyra1 scaffold_332 ensembl transcript 10579 11683 . - . ID=Phyra85846;Parent=Phyra85846;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_332 . CDS 10579 11122 . - 0 ID=Phyra85846;Parent=Phyra85846;rank=4 scaffold_332 . exon 10579 11122 . - . ID=Phyra85846.4;Parent=Phyra85846;constitutive=1;ensembl_phase=2;rank=4 scaffold_332 . CDS 11196 11286 . - 0 ID=Phyra85846;Parent=Phyra85846;rank=3 scaffold_332 . exon 11196 11286 . - . ID=Phyra85846.3;Parent=Phyra85846;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_332 . CDS 11343 11476 . - 0 ID=Phyra85846;Parent=Phyra85846;rank=2 scaffold_332 . exon 11343 11476 . - . ID=Phyra85846.2;Parent=Phyra85846;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_332 . CDS 11535 11683 . - 0 ID=Phyra85846;Parent=Phyra85846;rank=1 scaffold_332 . exon 11535 11683 . - . ID=Phyra85846.1;Parent=Phyra85846;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_332 ensembl protein_coding_gene 16484 17330 . - . ID=Phyra85848;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_332000007;logic_name=jgi_phyra1 scaffold_332 ensembl transcript 16484 17330 . - . ID=Phyra85848;Parent=Phyra85848;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_332 . CDS 16484 17329 . - 0 ID=Phyra85848;Parent=Phyra85848;rank=1 scaffold_332 . exon 16484 17330 . - . ID=Phyra85848.1;Parent=Phyra85848;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_333 1 17415 scaffold_333 . biological_region 271 273 0.999 - . logic_name=eponine scaffold_333 . repeat_region 2666 2744 . + . description=(TCG)n scaffold_333 . biological_region 2856 2859 0.999 + . logic_name=eponine scaffold_333 . repeat_region 5017 5087 . ? . description=dust scaffold_333 . biological_region 5309 5311 0.999 - . logic_name=eponine scaffold_333 . biological_region 5557 5559 0.999 - . logic_name=eponine scaffold_333 . biological_region 5845 5850 0.999 + . logic_name=eponine scaffold_333 . biological_region 6380 6383 0.999 + . logic_name=eponine scaffold_333 ensembl protein_coding_gene 6911 7774 . + . ID=Phyra85851;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_333000003;logic_name=jgi_phyra1 scaffold_333 ensembl transcript 6911 7774 . + . ID=Phyra85851;Parent=Phyra85851;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_333 . CDS 6911 7774 . + 0 ID=Phyra85851;Parent=Phyra85851;rank=1 scaffold_333 . exon 6911 7774 . + . ID=Phyra85851.1;Parent=Phyra85851;constitutive=1;rank=1 scaffold_333 ensembl protein_coding_gene 8009 11831 . + . ID=Phyra85852;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_333000004;logic_name=jgi_phyra1 scaffold_333 ensembl transcript 8009 11831 . + . ID=Phyra85852;Parent=Phyra85852;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_333 . CDS 8009 8158 . + 0 ID=Phyra85852;Parent=Phyra85852;rank=1 scaffold_333 . exon 8009 8158 . + . ID=Phyra85852.1;Parent=Phyra85852;constitutive=1;rank=1 scaffold_333 . CDS 8244 8333 . + 0 ID=Phyra85852;Parent=Phyra85852;rank=2 scaffold_333 . exon 8244 8333 . + . ID=Phyra85852.2;Parent=Phyra85852;constitutive=1;rank=2 scaffold_333 . CDS 8392 8638 . + 0 ID=Phyra85852;Parent=Phyra85852;rank=3 scaffold_333 . exon 8392 8638 . + . ID=Phyra85852.3;Parent=Phyra85852;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_333 . CDS 8719 11831 . + 0 ID=Phyra85852;Parent=Phyra85852;rank=4 scaffold_333 ensembl protein_coding_gene 44 510 . + . ID=Phyra97177;biotype=protein_coding;external_name=C_scaffold_333000001;logic_name=jgi_phyra1 scaffold_333 ensembl transcript 44 510 . + . ID=Phyra97177;Parent=Phyra97177;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_333 . exon 44 510 . + . ID=Phyra97177.1;Parent=Phyra97177;constitutive=1;ensembl_phase=-1;rank=1 scaffold_333 . CDS 46 510 . + 0 ID=Phyra97177;Parent=Phyra97177;rank=1 scaffold_333 ensembl protein_coding_gene 890 5803 . - . ID=Phyra97178;biotype=protein_coding;external_name=C_scaffold_333000002;logic_name=jgi_phyra1 scaffold_333 ensembl transcript 890 5803 . - . ID=Phyra97178;Parent=Phyra97178;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_333 . CDS 890 994 . - 0 ID=Phyra97178;Parent=Phyra97178;rank=9 scaffold_333 . exon 890 994 . - . ID=Phyra97178.9;Parent=Phyra97178;constitutive=1;rank=9 scaffold_333 . CDS 1059 1600 . - 0 ID=Phyra97178;Parent=Phyra97178;rank=8 scaffold_333 . exon 1059 1600 . - . ID=Phyra97178.8;Parent=Phyra97178;constitutive=1;ensembl_phase=1;rank=8 scaffold_333 . CDS 1659 1735 . - 0 ID=Phyra97178;Parent=Phyra97178;rank=7 scaffold_333 . exon 1659 1735 . - . ID=Phyra97178.7;Parent=Phyra97178;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_333 . CDS 1811 3039 . - 0 ID=Phyra97178;Parent=Phyra97178;rank=6 scaffold_333 . exon 1811 3039 . - . ID=Phyra97178.6;Parent=Phyra97178;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_333 . CDS 3088 3239 . - 0 ID=Phyra97178;Parent=Phyra97178;rank=5 scaffold_333 . exon 3088 3239 . - . ID=Phyra97178.5;Parent=Phyra97178;constitutive=1;ensembl_phase=1;rank=5 scaffold_333 . CDS 3264 4318 . - 0 ID=Phyra97178;Parent=Phyra97178;rank=4 scaffold_333 . exon 3264 4318 . - . ID=Phyra97178.4;Parent=Phyra97178;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_333 . CDS 4400 4655 . - 0 ID=Phyra97178;Parent=Phyra97178;rank=3 scaffold_333 . exon 4400 4655 . - . ID=Phyra97178.3;Parent=Phyra97178;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_333 . CDS 4740 4940 . - 0 ID=Phyra97178;Parent=Phyra97178;rank=2 scaffold_333 . exon 4740 4940 . - . ID=Phyra97178.2;Parent=Phyra97178;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_333 . CDS 5170 5803 . - 0 ID=Phyra97178;Parent=Phyra97178;rank=1 scaffold_333 . exon 5170 5803 . - . ID=Phyra97178.1;Parent=Phyra97178;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_333 . repeat_region 16492 16525 . ? . description=trf scaffold_333 ensembl protein_coding_gene 16165 17274 . - . ID=Phyra72377;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_333000001;logic_name=jgi_phyra1 scaffold_333 ensembl transcript 16165 17274 . - . ID=Phyra72377;Parent=Phyra72377;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_333 . CDS 16165 17274 . - 0 ID=Phyra72377;Parent=Phyra72377;rank=1 scaffold_333 . exon 16165 17274 . - . ID=Phyra72377.1;Parent=Phyra72377;constitutive=1;rank=1 scaffold_333 . exon 8719 11831 . + . ID=Phyra85852.4;Parent=Phyra85852;constitutive=1;ensembl_phase=1;rank=4 scaffold_333 ensembl protein_coding_gene 12119 12967 . + . ID=Phyra85853;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_333000005;logic_name=jgi_phyra1 scaffold_333 ensembl transcript 12119 12967 . + . ID=Phyra85853;Parent=Phyra85853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_333 . CDS 12119 12967 . + 0 ID=Phyra85853;Parent=Phyra85853;rank=1 scaffold_333 . exon 12119 12967 . + . ID=Phyra85853.1;Parent=Phyra85853;constitutive=1;rank=1 scaffold_333 ensembl protein_coding_gene 13107 14360 . + . ID=Phyra85854;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_333000006;logic_name=jgi_phyra1 scaffold_333 ensembl transcript 13107 14360 . + . ID=Phyra85854;Parent=Phyra85854;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_333 . CDS 13107 14360 . + 0 ID=Phyra85854;Parent=Phyra85854;rank=1 scaffold_333 . exon 13107 14360 . + . ID=Phyra85854.1;Parent=Phyra85854;constitutive=1;rank=1 scaffold_333 ensembl protein_coding_gene 15393 15806 . + . ID=Phyra85855;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_333000007;logic_name=jgi_phyra1 scaffold_333 ensembl transcript 15393 15806 . + . ID=Phyra85855;Parent=Phyra85855;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_333 . CDS 15393 15806 . + 0 ID=Phyra85855;Parent=Phyra85855;rank=1 scaffold_333 . exon 15393 15806 . + . ID=Phyra85855.1;Parent=Phyra85855;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_330 1 17632 scaffold_330 . repeat_region 1037 3714 . ? . description=dust scaffold_330 . repeat_region 4596 4663 . ? . description=dust scaffold_330 . repeat_region 8590 9781 . ? . description=dust scaffold_330 ensembl pseudogene 4677 5136 . + . ID=Phyra47578;biotype=pseudogene;external_name=gwEuk.330.1.1;logic_name=jgi_phyra1 scaffold_330 ensembl pseudogene 4677 5136 . + . ID=Phyra47578;Parent=Phyra47578;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_330 . exon 4677 5136 . + . ID=Phyra47578.1;Parent=Phyra47578;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_330 ensembl protein_coding_gene 5950 7365 . + . ID=Phyra85838;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_330000001;logic_name=jgi_phyra1 scaffold_330 ensembl transcript 5950 7365 . + . ID=Phyra85838;Parent=Phyra85838;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_330 . CDS 5950 7365 . + 0 ID=Phyra85838;Parent=Phyra85838;rank=1 scaffold_330 . exon 5950 7365 . + . ID=Phyra85838.1;Parent=Phyra85838;constitutive=1;rank=1 scaffold_330 . repeat_region 9783 9967 . - . description=GypsyPi-1c_LTR scaffold_330 . repeat_region 11027 11096 . - . description=GypsyPi-1c_I-int scaffold_330 . repeat_region 11179 11198 . ? . description=trf scaffold_330 . repeat_region 11250 11322 . - . description=GypsyPi-1c_I-int scaffold_330 . repeat_region 11492 11685 . - . description=GypsyPi-1c_I-int scaffold_330 . repeat_region 11950 12815 . - . description=GypsyPi-1c_I-int scaffold_330 . repeat_region 12925 14185 . - . description=GypsyPi-1c_I-int scaffold_330 . biological_region 13255 13260 0.999 - . logic_name=eponine scaffold_330 . repeat_region 14186 14491 . - . description=GypsyPi-1c_LTR scaffold_330 . biological_region 16128 16130 0.999 - . logic_name=eponine scaffold_330 ensembl protein_coding_gene 13479 14098 . - . ID=Phyra85839;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_330000002;logic_name=jgi_phyra1 scaffold_330 ensembl transcript 13479 14098 . - . ID=Phyra85839;Parent=Phyra85839;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_330 . CDS 13479 13921 . - 0 ID=Phyra85839;Parent=Phyra85839;rank=2 scaffold_330 . exon 13479 13921 . - . ID=Phyra85839.2;Parent=Phyra85839;constitutive=1;ensembl_phase=1;rank=2 scaffold_330 . CDS 14089 14098 . - 0 ID=Phyra85839;Parent=Phyra85839;rank=1 scaffold_330 . exon 14089 14098 . - . ID=Phyra85839.1;Parent=Phyra85839;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_331 1 17634 scaffold_331 . repeat_region 939 6694 . ? . description=dust scaffold_331 . repeat_region 8313 8334 . ? . description=trf scaffold_331 ensembl protein_coding_gene 33 437 . - . ID=Phyra85840;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_331000001;logic_name=jgi_phyra1 scaffold_331 ensembl transcript 33 437 . - . ID=Phyra85840;Parent=Phyra85840;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_331 . CDS 33 237 . - 0 ID=Phyra85840;Parent=Phyra85840;rank=2 scaffold_331 . exon 33 237 . - . ID=Phyra85840.2;Parent=Phyra85840;constitutive=1;ensembl_phase=2;rank=2 scaffold_331 . CDS 343 437 . - 0 ID=Phyra85840;Parent=Phyra85840;rank=1 scaffold_331 . exon 343 437 . - . ID=Phyra85840.1;Parent=Phyra85840;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_331 ensembl protein_coding_gene 10128 10433 . - . ID=Phyra47580;biotype=protein_coding;external_name=gwEuk.331.2.1;logic_name=jgi_phyra1 scaffold_331 ensembl transcript 10128 10433 . - . ID=Phyra47580;Parent=Phyra47580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_331 . CDS 10128 10433 . - 0 ID=Phyra47580;Parent=Phyra47580;rank=1 scaffold_331 . exon 10128 10433 . - . ID=Phyra47580.1;Parent=Phyra47580;constitutive=1;rank=1 scaffold_331 ensembl protein_coding_gene 9228 9569 . - . ID=Phyra85841;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_331000002;logic_name=jgi_phyra1 scaffold_331 ensembl transcript 9228 9569 . - . ID=Phyra85841;Parent=Phyra85841;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_331 . CDS 9228 9569 . - 0 ID=Phyra85841;Parent=Phyra85841;rank=1 scaffold_331 . exon 9228 9569 . - . ID=Phyra85841.1;Parent=Phyra85841;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_328 1 17671 scaffold_328 . biological_region 621 622 0.999 + . logic_name=eponine scaffold_328 . repeat_region 844 863 . ? . description=trf scaffold_328 . repeat_region 844 863 . ? . description=dust scaffold_328 . repeat_region 888 2659 . ? . description=dust scaffold_328 . repeat_region 3694 3727 . ? . description=trf scaffold_328 . repeat_region 3984 4033 . ? . description=dust scaffold_328 . biological_region 4522 4525 0.999 + . logic_name=eponine scaffold_328 . repeat_region 4794 4843 . ? . description=dust scaffold_328 . repeat_region 7711 8841 . ? . description=dust scaffold_328 ensembl protein_coding_gene 5 541 . - . ID=Phyra85833;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_328000001;logic_name=jgi_phyra1 scaffold_328 ensembl transcript 5 541 . - . ID=Phyra85833;Parent=Phyra85833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_328 . CDS 5 108 . - 0 ID=Phyra85833;Parent=Phyra85833;rank=2 scaffold_328 . exon 5 108 . - . ID=Phyra85833.2;Parent=Phyra85833;constitutive=1;ensembl_phase=1;rank=2 scaffold_328 . CDS 139 541 . - 0 ID=Phyra85833;Parent=Phyra85833;rank=1 scaffold_328 . exon 139 541 . - . ID=Phyra85833.1;Parent=Phyra85833;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_328 ensembl protein_coding_gene 7025 7534 . - . ID=Phyra85834;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_328000002;logic_name=jgi_phyra1 scaffold_328 ensembl transcript 7025 7534 . - . ID=Phyra85834;Parent=Phyra85834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_328 . CDS 7025 7032 . - 0 ID=Phyra85834;Parent=Phyra85834;rank=2 scaffold_328 . exon 7025 7032 . - . ID=Phyra85834.2;Parent=Phyra85834;constitutive=1;ensembl_phase=1;rank=2 scaffold_328 . CDS 7111 7534 . - 0 ID=Phyra85834;Parent=Phyra85834;rank=1 scaffold_328 . exon 7111 7534 . - . ID=Phyra85834.1;Parent=Phyra85834;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_328 . repeat_region 17108 17386 . - . description=GypsyPi-1c_I-int scaffold_328 ensembl protein_coding_gene 9268 9981 . + . ID=Phyra85835;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_328000003;logic_name=jgi_phyra1 scaffold_328 ensembl transcript 9268 9981 . + . ID=Phyra85835;Parent=Phyra85835;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_328 . CDS 9268 9981 . + 0 ID=Phyra85835;Parent=Phyra85835;rank=1 scaffold_328 . exon 9268 9981 . + . ID=Phyra85835.1;Parent=Phyra85835;constitutive=1;rank=1 scaffold_328 ensembl protein_coding_gene 10856 12164 . - . ID=Phyra85836;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_328000004;logic_name=jgi_phyra1 scaffold_328 ensembl transcript 10856 12164 . - . ID=Phyra85836;Parent=Phyra85836;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_328 . CDS 10856 10885 . - 0 ID=Phyra85836;Parent=Phyra85836;rank=6 scaffold_328 . exon 10856 10885 . - . ID=Phyra85836.6;Parent=Phyra85836;constitutive=1;rank=6 scaffold_328 . CDS 10911 10979 . - 0 ID=Phyra85836;Parent=Phyra85836;rank=5 scaffold_328 . exon 10911 10979 . - . ID=Phyra85836.5;Parent=Phyra85836;constitutive=1;rank=5 scaffold_328 . CDS 11004 11302 . - 0 ID=Phyra85836;Parent=Phyra85836;rank=4 scaffold_328 . exon 11004 11302 . - . ID=Phyra85836.4;Parent=Phyra85836;constitutive=1;ensembl_phase=1;rank=4 scaffold_328 . CDS 11377 11586 . - 0 ID=Phyra85836;Parent=Phyra85836;rank=3 scaffold_328 . exon 11377 11586 . - . ID=Phyra85836.3;Parent=Phyra85836;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_328 . CDS 11673 11856 . - 0 ID=Phyra85836;Parent=Phyra85836;rank=2 scaffold_328 . exon 11673 11856 . - . ID=Phyra85836.2;Parent=Phyra85836;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_328 . CDS 11931 12164 . - 0 ID=Phyra85836;Parent=Phyra85836;rank=1 scaffold_328 . exon 11931 12164 . - . ID=Phyra85836.1;Parent=Phyra85836;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_327 1 17791 scaffold_327 . repeat_region 3205 3212 . ? . description=dust scaffold_327 . repeat_region 3612 3696 . ? . description=trf scaffold_327 . repeat_region 4186 4193 . ? . description=dust scaffold_327 . repeat_region 5505 6546 . ? . description=dust scaffold_327 . repeat_region 7083 7170 . ? . description=trf scaffold_327 . repeat_region 7083 7262 . + . description=(CGA)n scaffold_327 . biological_region 7119 7126 0.999 + . logic_name=eponine scaffold_327 . repeat_region 7164 7236 . ? . description=trf scaffold_327 . repeat_region 7172 7232 . ? . description=dust scaffold_327 . biological_region 7210 7214 0.999 - . logic_name=eponine scaffold_327 . biological_region 7230 7231 0.999 + . logic_name=eponine scaffold_327 . repeat_region 7977 11780 . ? . description=dust scaffold_327 ensembl protein_coding_gene 12151 13074 . - . ID=Phyra85832;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_327000001;logic_name=jgi_phyra1 scaffold_327 ensembl transcript 12151 13074 . - . ID=Phyra85832;Parent=Phyra85832;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_327 . CDS 12151 13074 . - 0 ID=Phyra85832;Parent=Phyra85832;rank=1 scaffold_327 . exon 12151 13074 . - . ID=Phyra85832.1;Parent=Phyra85832;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_324 1 17867 scaffold_324 . repeat_region 1295 2488 . ? . description=dust scaffold_324 . repeat_region 3547 5328 . ? . description=dust scaffold_324 . repeat_region 5331 5348 . ? . description=dust scaffold_324 . repeat_region 6713 6726 . ? . description=dust scaffold_324 . repeat_region 7633 7737 . ? . description=trf scaffold_324 . repeat_region 8423 14350 . ? . description=dust scaffold_324 ensembl protein_coding_gene 2628 3200 . + . ID=Phyra47487;biotype=protein_coding;external_name=gwEuk.324.3.1;logic_name=jgi_phyra1 scaffold_324 ensembl transcript 2628 3200 . + . ID=Phyra47487;Parent=Phyra47487;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_324 . CDS 2628 3200 . + 0 ID=Phyra47487;Parent=Phyra47487;rank=1 scaffold_324 . exon 2628 3200 . + . ID=Phyra47487.1;Parent=Phyra47487;constitutive=1;rank=1 scaffold_324 . biological_region 14513 14517 0.999 + . logic_name=eponine scaffold_324 . biological_region 15284 15286 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_329 1 17901 scaffold_329 . repeat_region 1158 1196 . ? . description=trf scaffold_329 . repeat_region 1248 1255 . ? . description=dust scaffold_329 . repeat_region 2065 3072 . ? . description=dust scaffold_329 . biological_region 4302 4305 0.999 - . logic_name=eponine scaffold_329 . biological_region 4414 4415 0.999 + . logic_name=eponine scaffold_329 . biological_region 5000 5002 0.999 + . logic_name=eponine scaffold_329 ensembl protein_coding_gene 1382 1908 . + . ID=Phyra85837;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_329000001;logic_name=jgi_phyra1 scaffold_329 ensembl transcript 1382 1908 . + . ID=Phyra85837;Parent=Phyra85837;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_329 . CDS 1382 1447 . + 0 ID=Phyra85837;Parent=Phyra85837;rank=1 scaffold_329 . exon 1382 1447 . + . ID=Phyra85837.1;Parent=Phyra85837;constitutive=1;rank=1 scaffold_329 . CDS 1582 1908 . + 0 ID=Phyra85837;Parent=Phyra85837;rank=2 scaffold_329 . exon 1582 1908 . + . ID=Phyra85837.2;Parent=Phyra85837;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_321 1 18006 scaffold_321 . biological_region 927 928 0.999 + . logic_name=eponine scaffold_321 . repeat_region 1501 2678 . ? . description=dust scaffold_321 . repeat_region 2846 3201 . ? . description=trf scaffold_321 . repeat_region 2860 2954 . ? . description=dust scaffold_321 . repeat_region 2865 2902 . ? . description=trf scaffold_321 . repeat_region 2912 3115 . ? . description=trf scaffold_321 . repeat_region 2989 3115 . ? . description=dust scaffold_321 . repeat_region 3006 3115 . ? . description=trf scaffold_321 . repeat_region 4129 5187 . ? . description=dust scaffold_321 . biological_region 5533 5533 0.999 + . logic_name=eponine scaffold_321 . repeat_region 6547 7443 . ? . description=dust scaffold_321 ensembl protein_coding_gene 41 734 . + . ID=Phyra85816;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_321000001;logic_name=jgi_phyra1 scaffold_321 ensembl transcript 41 734 . + . ID=Phyra85816;Parent=Phyra85816;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_321 . exon 41 734 . + . ID=Phyra85816.1;Parent=Phyra85816;constitutive=1;ensembl_phase=-1;rank=1 scaffold_321 . CDS 42 734 . + 0 ID=Phyra85816;Parent=Phyra85816;rank=1 scaffold_321 ensembl protein_coding_gene 5212 6369 . - . ID=Phyra85817;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_321000002;logic_name=jgi_phyra1 scaffold_321 ensembl transcript 5212 6369 . - . ID=Phyra85817;Parent=Phyra85817;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_321 . CDS 5212 6369 . - 0 ID=Phyra85817;Parent=Phyra85817;rank=1 scaffold_321 . exon 5212 6369 . - . ID=Phyra85817.1;Parent=Phyra85817;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_325 1 18062 scaffold_325 . repeat_region 2699 6634 . ? . description=dust scaffold_325 . biological_region 16030 16033 0.999 - . logic_name=eponine scaffold_325 . biological_region 16798 16799 0.999 + . logic_name=eponine scaffold_325 ensembl protein_coding_gene 17210 17914 . + . ID=Phyra72374;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_325000001;logic_name=jgi_phyra1 scaffold_325 ensembl transcript 17210 17914 . + . ID=Phyra72374;Parent=Phyra72374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_325 . CDS 17210 17914 . + 0 ID=Phyra72374;Parent=Phyra72374;rank=1 scaffold_325 . exon 17210 17914 . + . ID=Phyra72374.1;Parent=Phyra72374;constitutive=1;rank=1 scaffold_325 ensembl protein_coding_gene 9081 11039 . - . ID=Phyra85825;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_325000001;logic_name=jgi_phyra1 scaffold_325 ensembl transcript 9081 11039 . - . ID=Phyra85825;Parent=Phyra85825;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_325 . CDS 9081 9094 . - 0 ID=Phyra85825;Parent=Phyra85825;rank=2 scaffold_325 . exon 9081 9094 . - . ID=Phyra85825.2;Parent=Phyra85825;constitutive=1;ensembl_phase=1;rank=2 scaffold_325 . CDS 9344 11039 . - 0 ID=Phyra85825;Parent=Phyra85825;rank=1 scaffold_325 . exon 9344 11039 . - . ID=Phyra85825.1;Parent=Phyra85825;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_325 ensembl protein_coding_gene 13833 15419 . + . ID=Phyra85826;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_325000002;logic_name=jgi_phyra1 scaffold_325 ensembl transcript 13833 15419 . + . ID=Phyra85826;Parent=Phyra85826;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_325 . CDS 13833 15419 . + 0 ID=Phyra85826;Parent=Phyra85826;rank=1 scaffold_325 . exon 13833 15419 . + . ID=Phyra85826.1;Parent=Phyra85826;constitutive=1;rank=1 scaffold_325 ensembl protein_coding_gene 15809 16912 . - . ID=Phyra85827;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_325000003;logic_name=jgi_phyra1 scaffold_325 ensembl transcript 15809 16912 . - . ID=Phyra85827;Parent=Phyra85827;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_325 . CDS 15809 16912 . - 0 ID=Phyra85827;Parent=Phyra85827;rank=1 scaffold_325 . exon 15809 16912 . - . ID=Phyra85827.1;Parent=Phyra85827;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_326 1 18095 scaffold_326 . repeat_region 505 547 . + . description=(CGGA)n scaffold_326 . repeat_region 508 545 . ? . description=dust scaffold_326 . repeat_region 515 545 . ? . description=trf scaffold_326 . repeat_region 896 903 . ? . description=dust scaffold_326 . repeat_region 1005 1054 . ? . description=dust scaffold_326 . repeat_region 1955 2286 . ? . description=dust scaffold_326 . repeat_region 3914 3936 . ? . description=dust scaffold_326 . repeat_region 4042 4072 . ? . description=dust scaffold_326 . biological_region 5186 5187 0.999 + . logic_name=eponine scaffold_326 . repeat_region 7659 7708 . ? . description=dust scaffold_326 ensembl pseudogene 5781 6919 . - . ID=Phyra47496;biotype=pseudogene;external_name=gwEuk.326.4.1;logic_name=jgi_phyra1 scaffold_326 ensembl pseudogene 5781 6919 . - . ID=Phyra47496;Parent=Phyra47496;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_326 . exon 5781 6919 . - . ID=Phyra47496.1;Parent=Phyra47496;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_326 . repeat_region 10649 10751 . - . description=Gypsy-1-I_PI-int scaffold_326 ensembl protein_coding_gene 13783 14274 . - . ID=Phyra85830;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_326000002;logic_name=jgi_phyra1 scaffold_326 ensembl transcript 13783 14274 . - . ID=Phyra85830;Parent=Phyra85830;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_326 . CDS 13783 14274 . - 0 ID=Phyra85830;Parent=Phyra85830;rank=1 scaffold_326 . exon 13783 14274 . - . ID=Phyra85830.1;Parent=Phyra85830;constitutive=1;rank=1 scaffold_326 ensembl protein_coding_gene 17230 17823 . - . ID=Phyra85831;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_326000003;logic_name=jgi_phyra1 scaffold_326 ensembl transcript 17230 17823 . - . ID=Phyra85831;Parent=Phyra85831;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_326 . CDS 17230 17823 . - 0 ID=Phyra85831;Parent=Phyra85831;rank=1 scaffold_326 . exon 17230 17823 . - . ID=Phyra85831.1;Parent=Phyra85831;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_322 1 18135 scaffold_322 . biological_region 2670 2671 0.999 - . logic_name=eponine scaffold_322 . biological_region 2897 2899 0.999 - . logic_name=eponine scaffold_322 . biological_region 2928 2932 0.999 - . logic_name=eponine scaffold_322 . biological_region 4064 4069 0.999 + . logic_name=eponine scaffold_322 . biological_region 4123 4125 0.999 - . logic_name=eponine scaffold_322 . biological_region 4154 4156 0.999 + . logic_name=eponine scaffold_322 . biological_region 4174 4175 0.999 - . logic_name=eponine scaffold_322 . repeat_region 6477 6595 . ? . description=dust scaffold_322 . biological_region 7387 7390 0.999 + . logic_name=eponine scaffold_322 ensembl protein_coding_gene 581 1489 . + . ID=Phyra85818;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_322000001;logic_name=jgi_phyra1 scaffold_322 ensembl transcript 581 1489 . + . ID=Phyra85818;Parent=Phyra85818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_322 . CDS 581 1489 . + 0 ID=Phyra85818;Parent=Phyra85818;rank=1 scaffold_322 . exon 581 1489 . + . ID=Phyra85818.1;Parent=Phyra85818;constitutive=1;rank=1 scaffold_322 ensembl protein_coding_gene 1795 4125 . - . ID=Phyra85819;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_322000002;logic_name=jgi_phyra1 scaffold_322 ensembl transcript 1795 4125 . - . ID=Phyra85819;Parent=Phyra85819;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_322 . CDS 1795 4125 . - 0 ID=Phyra85819;Parent=Phyra85819;rank=1 scaffold_322 . exon 1795 4125 . - . ID=Phyra85819.1;Parent=Phyra85819;constitutive=1;rank=1 scaffold_322 ensembl protein_coding_gene 5893 12503 . + . ID=Phyra85820;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_322000003;logic_name=jgi_phyra1 scaffold_322 ensembl transcript 5893 12503 . + . ID=Phyra85820;Parent=Phyra85820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_322 . CDS 5893 6463 . + 0 ID=Phyra85820;Parent=Phyra85820;rank=1 scaffold_322 . exon 5893 6463 . + . ID=Phyra85820.1;Parent=Phyra85820;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_322 . CDS 6634 7595 . + 0 ID=Phyra85820;Parent=Phyra85820;rank=2 scaffold_322 . exon 6634 7595 . + . ID=Phyra85820.2;Parent=Phyra85820;constitutive=1;ensembl_phase=1;rank=2 scaffold_322 . CDS 7620 12503 . + 0 ID=Phyra85820;Parent=Phyra85820;rank=3 scaffold_322 . exon 7620 12503 . + . ID=Phyra85820.3;Parent=Phyra85820;constitutive=1;rank=3 scaffold_322 . repeat_region 15280 15318 . ? . description=trf scaffold_322 ensembl protein_coding_gene 12634 15075 . - . ID=Phyra85821;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_322000004;logic_name=jgi_phyra1 scaffold_322 ensembl transcript 12634 15075 . - . ID=Phyra85821;Parent=Phyra85821;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_322 . CDS 12634 15075 . - 0 ID=Phyra85821;Parent=Phyra85821;rank=1 scaffold_322 . exon 12634 15075 . - . ID=Phyra85821.1;Parent=Phyra85821;constitutive=1;rank=1 scaffold_322 ensembl protein_coding_gene 16448 17946 . - . ID=Phyra85822;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_322000005;logic_name=jgi_phyra1 scaffold_322 ensembl transcript 16448 17946 . - . ID=Phyra85822;Parent=Phyra85822;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_322 . CDS 16448 17134 . - 0 ID=Phyra85822;Parent=Phyra85822;rank=3 scaffold_322 . exon 16448 17134 . - . ID=Phyra85822.3;Parent=Phyra85822;constitutive=1;rank=3 scaffold_322 . CDS 17183 17542 . - 0 ID=Phyra85822;Parent=Phyra85822;rank=2 scaffold_322 . exon 17183 17542 . - . ID=Phyra85822.2;Parent=Phyra85822;constitutive=1;rank=2 scaffold_322 . CDS 17622 17945 . - 0 ID=Phyra85822;Parent=Phyra85822;rank=1 scaffold_322 . exon 17622 17946 . - . ID=Phyra85822.1;Parent=Phyra85822;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_319 1 18160 scaffold_319 . repeat_region 879 4337 . ? . description=dust scaffold_319 . repeat_region 6818 6840 . ? . description=trf scaffold_319 . repeat_region 7245 7294 . ? . description=dust scaffold_319 . repeat_region 8077 10445 . ? . description=dust scaffold_319 ensembl protein_coding_gene 4552 5838 . + . ID=Phyra85812;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_319000001;logic_name=jgi_phyra1 scaffold_319 ensembl transcript 4552 5838 . + . ID=Phyra85812;Parent=Phyra85812;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_319 . CDS 4552 5838 . + 0 ID=Phyra85812;Parent=Phyra85812;rank=1 scaffold_319 . exon 4552 5838 . + . ID=Phyra85812.1;Parent=Phyra85812;constitutive=1;rank=1 scaffold_319 ensembl protein_coding_gene 14339 14866 . + . ID=Phyra47241;biotype=protein_coding;external_name=gwEuk.319.4.1;logic_name=jgi_phyra1 scaffold_319 ensembl transcript 14339 14866 . + . ID=Phyra47241;Parent=Phyra47241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_319 . CDS 14339 14866 . + 0 ID=Phyra47241;Parent=Phyra47241;rank=1 scaffold_319 . exon 14339 14866 . + . ID=Phyra47241.1;Parent=Phyra47241;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_317 1 18174 scaffold_317 . biological_region 2225 2229 0.999 + . logic_name=eponine scaffold_317 . biological_region 2249 2250 0.999 + . logic_name=eponine scaffold_317 . biological_region 3862 3868 0.999 - . logic_name=eponine scaffold_317 . repeat_region 6083 6092 . ? . description=dust scaffold_317 . biological_region 6312 6315 0.999 + . logic_name=eponine scaffold_317 . repeat_region 7250 7259 . ? . description=dust scaffold_317 . repeat_region 7471 7496 . ? . description=trf scaffold_317 . repeat_region 7593 7637 . ? . description=dust scaffold_317 . repeat_region 7594 7636 . ? . description=trf scaffold_317 . repeat_region 7731 7765 . ? . description=trf scaffold_317 . repeat_region 8010 8081 . ? . description=trf scaffold_317 . repeat_region 8040 8082 . ? . description=trf scaffold_317 ensembl protein_coding_gene 8499 10274 . + . ID=Phyra47235;biotype=protein_coding;external_name=gwEuk.317.6.1;logic_name=jgi_phyra1 scaffold_317 ensembl transcript 8499 10274 . + . ID=Phyra47235;Parent=Phyra47235;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_317 . CDS 8499 10274 . + 0 ID=Phyra47235;Parent=Phyra47235;rank=1 scaffold_317 . exon 8499 10274 . + . ID=Phyra47235.1;Parent=Phyra47235;constitutive=1;rank=1 scaffold_317 ensembl protein_coding_gene 2202 2663 . + . ID=Phyra85803;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_317000001;logic_name=jgi_phyra1 scaffold_317 ensembl transcript 2202 2663 . + . ID=Phyra85803;Parent=Phyra85803;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_317 . CDS 2202 2663 . + 0 ID=Phyra85803;Parent=Phyra85803;rank=1 scaffold_317 . exon 2202 2663 . + . ID=Phyra85803.1;Parent=Phyra85803;constitutive=1;rank=1 scaffold_317 ensembl protein_coding_gene 2776 3859 . - . ID=Phyra85804;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_317000002;logic_name=jgi_phyra1 scaffold_317 ensembl transcript 2776 3859 . - . ID=Phyra85804;Parent=Phyra85804;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_317 . CDS 2776 3504 . - 0 ID=Phyra85804;Parent=Phyra85804;rank=3 scaffold_317 . exon 2776 3504 . - . ID=Phyra85804.3;Parent=Phyra85804;constitutive=1;rank=3 scaffold_317 . CDS 3567 3672 . - 0 ID=Phyra85804;Parent=Phyra85804;rank=2 scaffold_317 . exon 3567 3672 . - . ID=Phyra85804.2;Parent=Phyra85804;constitutive=1;ensembl_phase=2;rank=2 scaffold_317 . CDS 3747 3859 . - 0 ID=Phyra85804;Parent=Phyra85804;rank=1 scaffold_317 . exon 3747 3859 . - . ID=Phyra85804.1;Parent=Phyra85804;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_317 ensembl protein_coding_gene 6210 6995 . + . ID=Phyra85806;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_317000004;logic_name=jgi_phyra1 scaffold_317 ensembl transcript 6210 6995 . + . ID=Phyra85806;Parent=Phyra85806;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_317 . CDS 6210 6995 . + 0 ID=Phyra85806;Parent=Phyra85806;rank=1 scaffold_317 . exon 6210 6995 . + . ID=Phyra85806.1;Parent=Phyra85806;constitutive=1;rank=1 scaffold_317 ensembl protein_coding_gene 4224 5600 . + . ID=Phyra97175;biotype=protein_coding;external_name=C_scaffold_317000003;logic_name=jgi_phyra1 scaffold_317 ensembl transcript 4224 5600 . + . ID=Phyra97175;Parent=Phyra97175;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_317 . CDS 4224 4406 . + 0 ID=Phyra97175;Parent=Phyra97175;rank=1 scaffold_317 . exon 4224 4406 . + . ID=Phyra97175.1;Parent=Phyra97175;constitutive=1;rank=1 scaffold_317 . CDS 4619 4736 . + 0 ID=Phyra97175;Parent=Phyra97175;rank=2 scaffold_317 . exon 4619 4736 . + . ID=Phyra97175.2;Parent=Phyra97175;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_317 . CDS 4817 5056 . + 0 ID=Phyra97175;Parent=Phyra97175;rank=3 scaffold_317 . exon 4817 5056 . + . ID=Phyra97175.3;Parent=Phyra97175;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_317 . CDS 5143 5266 . + 0 ID=Phyra97175;Parent=Phyra97175;rank=4 scaffold_317 . exon 5143 5266 . + . ID=Phyra97175.4;Parent=Phyra97175;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_317 . CDS 5334 5444 . + 0 ID=Phyra97175;Parent=Phyra97175;rank=5 scaffold_317 . exon 5334 5444 . + . ID=Phyra97175.5;Parent=Phyra97175;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_317 . CDS 5519 5600 . + 0 ID=Phyra97175;Parent=Phyra97175;rank=6 scaffold_317 . exon 5519 5600 . + . ID=Phyra97175.6;Parent=Phyra97175;constitutive=1;ensembl_phase=2;rank=6 scaffold_317 ensembl protein_coding_gene 11441 12337 . + . ID=Phyra85808;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_317000006;logic_name=jgi_phyra1 scaffold_317 ensembl transcript 11441 12337 . + . ID=Phyra85808;Parent=Phyra85808;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_317 . CDS 11441 12337 . + 0 ID=Phyra85808;Parent=Phyra85808;rank=1 scaffold_317 . exon 11441 12337 . + . ID=Phyra85808.1;Parent=Phyra85808;constitutive=1;rank=1 scaffold_317 ensembl protein_coding_gene 13554 16496 . - . ID=Phyra85809;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_317000007;logic_name=jgi_phyra1 scaffold_317 ensembl transcript 13554 16496 . - . ID=Phyra85809;Parent=Phyra85809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_317 . CDS 13554 16496 . - 0 ID=Phyra85809;Parent=Phyra85809;rank=1 scaffold_317 . exon 13554 16496 . - . ID=Phyra85809.1;Parent=Phyra85809;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_318 1 18205 scaffold_318 . repeat_region 1 152 . - . description=GypsyPi-1c_I-int scaffold_318 . biological_region 609 611 0.999 - . logic_name=eponine scaffold_318 . biological_region 661 665 0.999 - . logic_name=eponine scaffold_318 . biological_region 700 702 0.999 + . logic_name=eponine scaffold_318 . biological_region 738 739 0.999 + . logic_name=eponine scaffold_318 . biological_region 762 768 0.999 - . logic_name=eponine scaffold_318 . biological_region 816 816 0.999 - . logic_name=eponine scaffold_318 . repeat_region 1858 1907 . ? . description=dust scaffold_318 . biological_region 2237 2241 0.999 - . logic_name=eponine scaffold_318 . repeat_region 3431 3462 . ? . description=trf scaffold_318 . repeat_region 5383 8968 . ? . description=dust scaffold_318 ensembl protein_coding_gene 15 425 . - . ID=Phyra85810;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_318000001;logic_name=jgi_phyra1 scaffold_318 ensembl transcript 15 425 . - . ID=Phyra85810;Parent=Phyra85810;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_318 . CDS 15 425 . - 0 ID=Phyra85810;Parent=Phyra85810;rank=1 scaffold_318 . exon 15 425 . - . ID=Phyra85810.1;Parent=Phyra85810;constitutive=1;rank=1 scaffold_318 ensembl protein_coding_gene 4544 5027 . + . ID=Phyra85811;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_318000002;logic_name=jgi_phyra1 scaffold_318 ensembl transcript 4544 5027 . + . ID=Phyra85811;Parent=Phyra85811;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_318 . CDS 4544 4591 . + 0 ID=Phyra85811;Parent=Phyra85811;rank=1 scaffold_318 . exon 4544 4591 . + . ID=Phyra85811.1;Parent=Phyra85811;constitutive=1;rank=1 scaffold_318 . CDS 4646 4889 . + 0 ID=Phyra85811;Parent=Phyra85811;rank=2 scaffold_318 . exon 4646 4889 . + . ID=Phyra85811.2;Parent=Phyra85811;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_318 . CDS 5014 5027 . + 0 ID=Phyra85811;Parent=Phyra85811;rank=3 scaffold_318 . exon 5014 5027 . + . ID=Phyra85811.3;Parent=Phyra85811;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_315 1 18480 scaffold_315 . biological_region 73 74 0.999 - . logic_name=eponine scaffold_315 . repeat_region 188 291 . ? . description=trf scaffold_315 . repeat_region 543 733 . + . description=GypsyPi-1c_I-int scaffold_315 . repeat_region 957 1190 . ? . description=dust scaffold_315 . biological_region 1574 1576 0.999 - . logic_name=eponine scaffold_315 . repeat_region 3478 3911 . ? . description=dust scaffold_315 . repeat_region 4868 4926 . ? . description=dust scaffold_315 . repeat_region 4951 4959 . ? . description=dust scaffold_315 . repeat_region 5677 5720 . ? . description=trf scaffold_315 . repeat_region 7212 7261 . ? . description=dust scaffold_315 . repeat_region 8607 8616 . ? . description=dust scaffold_315 . biological_region 8695 8699 0.999 + . logic_name=eponine scaffold_315 . repeat_region 8782 8899 . + . description=(TCG)n scaffold_315 . repeat_region 8793 8867 . ? . description=trf scaffold_315 . repeat_region 9025 9626 . ? . description=dust scaffold_315 ensembl protein_coding_gene 2233 2801 . - . ID=Phyra85797;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_315000001;logic_name=jgi_phyra1 scaffold_315 ensembl transcript 2233 2801 . - . ID=Phyra85797;Parent=Phyra85797;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_315 . CDS 2233 2278 . - 0 ID=Phyra85797;Parent=Phyra85797;rank=2 scaffold_315 . exon 2233 2278 . - . ID=Phyra85797.2;Parent=Phyra85797;constitutive=1;ensembl_phase=2;rank=2 scaffold_315 . CDS 2437 2801 . - 0 ID=Phyra85797;Parent=Phyra85797;rank=1 scaffold_315 . exon 2437 2801 . - . ID=Phyra85797.1;Parent=Phyra85797;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_315 ensembl protein_coding_gene 3915 7338 . + . ID=Phyra85798;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_315000002;logic_name=jgi_phyra1 scaffold_315 ensembl transcript 3915 7338 . + . ID=Phyra85798;Parent=Phyra85798;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_315 . CDS 3915 3940 . + 0 ID=Phyra85798;Parent=Phyra85798;rank=1 scaffold_315 . exon 3915 3940 . + . ID=Phyra85798.1;Parent=Phyra85798;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_315 . CDS 3989 4807 . + 0 ID=Phyra85798;Parent=Phyra85798;rank=2 scaffold_315 . exon 3989 4807 . + . ID=Phyra85798.2;Parent=Phyra85798;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_315 . CDS 4869 4916 . + 0 ID=Phyra85798;Parent=Phyra85798;rank=3 scaffold_315 . exon 4869 4916 . + . ID=Phyra85798.3;Parent=Phyra85798;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_315 . CDS 5349 7082 . + 0 ID=Phyra85798;Parent=Phyra85798;rank=4 scaffold_315 . exon 5349 7082 . + . ID=Phyra85798.4;Parent=Phyra85798;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_315 . CDS 7314 7338 . + 0 ID=Phyra85798;Parent=Phyra85798;rank=5 scaffold_315 . exon 7314 7338 . + . ID=Phyra85798.5;Parent=Phyra85798;constitutive=1;ensembl_phase=2;rank=5 scaffold_315 ensembl protein_coding_gene 9963 11213 . + . ID=Phyra85799;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_315000003;logic_name=jgi_phyra1 scaffold_315 ensembl transcript 9963 11213 . + . ID=Phyra85799;Parent=Phyra85799;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_315 . CDS 9963 10174 . + 0 ID=Phyra85799;Parent=Phyra85799;rank=1 scaffold_315 . exon 9963 10174 . + . ID=Phyra85799.1;Parent=Phyra85799;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_315 . CDS 10239 11167 . + 0 ID=Phyra85799;Parent=Phyra85799;rank=2 scaffold_315 . exon 10239 11167 . + . ID=Phyra85799.2;Parent=Phyra85799;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_315 . CDS 11197 11213 . + 0 ID=Phyra85799;Parent=Phyra85799;rank=3 scaffold_315 . exon 11197 11213 . + . ID=Phyra85799.3;Parent=Phyra85799;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_316 1 18632 scaffold_316 . biological_region 162 162 0.999 - . logic_name=eponine scaffold_316 . biological_region 216 217 0.999 + . logic_name=eponine scaffold_316 . biological_region 321 324 0.999 - . logic_name=eponine scaffold_316 . biological_region 579 582 0.999 - . logic_name=eponine scaffold_316 . biological_region 671 674 0.999 - . logic_name=eponine scaffold_316 . repeat_region 960 4846 . ? . description=dust scaffold_316 . repeat_region 5724 5732 . ? . description=dust scaffold_316 . repeat_region 6342 6444 . + . description=LSU-rRNA_Hca scaffold_316 . repeat_region 6718 6751 . ? . description=trf scaffold_316 . repeat_region 6839 7021 . ? . description=dust scaffold_316 . biological_region 8720 8723 0.999 + . logic_name=eponine scaffold_316 ensembl protein_coding_gene 6438 6617 . + . ID=Phyra47219;biotype=protein_coding;external_name=gwEuk.316.2.1;logic_name=jgi_phyra1 scaffold_316 ensembl transcript 6438 6617 . + . ID=Phyra47219;Parent=Phyra47219;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_316 . CDS 6438 6617 . + 0 ID=Phyra47219;Parent=Phyra47219;rank=1 scaffold_316 . exon 6438 6617 . + . ID=Phyra47219.1;Parent=Phyra47219;constitutive=1;rank=1 scaffold_316 ensembl protein_coding_gene 7812 8087 . - . ID=Phyra47223;biotype=protein_coding;external_name=gwEuk.316.6.1;logic_name=jgi_phyra1 scaffold_316 ensembl transcript 7812 8087 . - . ID=Phyra47223;Parent=Phyra47223;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_316 . CDS 7812 8087 . - 0 ID=Phyra47223;Parent=Phyra47223;rank=1 scaffold_316 . exon 7812 8087 . - . ID=Phyra47223.1;Parent=Phyra47223;constitutive=1;rank=1 scaffold_316 ensembl protein_coding_gene 59 5413 . - . ID=Phyra85800;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_316000001;logic_name=jgi_phyra1 scaffold_316 ensembl transcript 59 5413 . - . ID=Phyra85800;Parent=Phyra85800;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_316 . CDS 59 944 . - 0 ID=Phyra85800;Parent=Phyra85800;rank=2 scaffold_316 . exon 59 944 . - . ID=Phyra85800.2;Parent=Phyra85800;constitutive=1;ensembl_phase=2;rank=2 scaffold_316 . CDS 4851 5413 . - 0 ID=Phyra85800;Parent=Phyra85800;rank=1 scaffold_316 . exon 4851 5413 . - . ID=Phyra85800.1;Parent=Phyra85800;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_316 ensembl protein_coding_gene 13707 14931 . - . ID=Phyra85802;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_316000003;logic_name=jgi_phyra1 scaffold_316 ensembl transcript 13707 14931 . - . ID=Phyra85802;Parent=Phyra85802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_316 . CDS 13707 13721 . - 0 ID=Phyra85802;Parent=Phyra85802;rank=4 scaffold_316 . exon 13707 13721 . - . ID=Phyra85802.4;Parent=Phyra85802;constitutive=1;rank=4 scaffold_316 . CDS 13783 14067 . - 0 ID=Phyra85802;Parent=Phyra85802;rank=3 scaffold_316 . exon 13783 14067 . - . ID=Phyra85802.3;Parent=Phyra85802;constitutive=1;rank=3 scaffold_316 . CDS 14112 14311 . - 0 ID=Phyra85802;Parent=Phyra85802;rank=2 scaffold_316 . exon 14112 14311 . - . ID=Phyra85802.2;Parent=Phyra85802;constitutive=1;ensembl_phase=1;rank=2 scaffold_316 . CDS 14586 14931 . - 0 ID=Phyra85802;Parent=Phyra85802;rank=1 scaffold_316 . exon 14586 14931 . - . ID=Phyra85802.1;Parent=Phyra85802;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_312 1 18633 scaffold_312 . repeat_region 332 463 . - . description=GypsyPi-1c_LTR scaffold_312 . biological_region 900 909 0.999 + . logic_name=eponine scaffold_312 . biological_region 917 922 0.999 - . logic_name=eponine scaffold_312 . biological_region 943 945 0.999 - . logic_name=eponine scaffold_312 . repeat_region 1006 4555 . ? . description=dust scaffold_312 . repeat_region 4556 4920 . - . description=GypsyPi-1c_I-int scaffold_312 . repeat_region 4921 5229 . - . description=GypsyPi-1c_LTR scaffold_312 . repeat_region 6725 6960 . - . description=GypsyPi-1c_LTR scaffold_312 . repeat_region 7020 7027 . ? . description=dust scaffold_312 . repeat_region 8940 8983 . ? . description=dust scaffold_312 . repeat_region 8944 8971 . ? . description=trf scaffold_312 ensembl protein_coding_gene 8971 10880 . + . ID=Phyra85790;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_312000001;logic_name=jgi_phyra1 scaffold_312 ensembl transcript 8971 10880 . + . ID=Phyra85790;Parent=Phyra85790;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_312 . CDS 8971 10541 . + 0 ID=Phyra85790;Parent=Phyra85790;rank=1 scaffold_312 . exon 8971 10541 . + . ID=Phyra85790.1;Parent=Phyra85790;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_312 . CDS 10862 10880 . + 0 ID=Phyra85790;Parent=Phyra85790;rank=2 scaffold_312 . exon 10862 10880 . + . ID=Phyra85790.2;Parent=Phyra85790;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_314 1 18634 scaffold_314 . biological_region 69 70 0.999 + . logic_name=eponine scaffold_314 . biological_region 525 528 0.999 + . logic_name=eponine scaffold_314 . biological_region 2746 2748 0.999 + . logic_name=eponine scaffold_314 . biological_region 3247 3248 0.999 - . logic_name=eponine scaffold_314 . repeat_region 3393 3400 . ? . description=dust scaffold_314 . repeat_region 6090 6102 . ? . description=dust scaffold_314 . repeat_region 8226 8233 . ? . description=dust scaffold_314 ensembl protein_coding_gene 52 780 . - . ID=Phyra85795;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_314000001;logic_name=jgi_phyra1 scaffold_314 ensembl transcript 52 780 . - . ID=Phyra85795;Parent=Phyra85795;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_314 . CDS 52 780 . - 0 ID=Phyra85795;Parent=Phyra85795;rank=1 scaffold_314 . exon 52 780 . - . ID=Phyra85795.1;Parent=Phyra85795;constitutive=1;rank=1 scaffold_314 . repeat_region 9372 9409 . ? . description=trf scaffold_314 ensembl protein_coding_gene 9786 10766 . - . ID=Phyra85796;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_314000002;logic_name=jgi_phyra1 scaffold_314 ensembl transcript 9786 10766 . - . ID=Phyra85796;Parent=Phyra85796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_314 . CDS 9786 10766 . - 0 ID=Phyra85796;Parent=Phyra85796;rank=1 scaffold_314 . exon 9786 10766 . - . ID=Phyra85796.1;Parent=Phyra85796;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_311 1 18725 scaffold_311 . repeat_region 2223 2261 . ? . description=trf scaffold_311 . repeat_region 2488 2542 . ? . description=trf scaffold_311 . repeat_region 2491 2544 . ? . description=trf scaffold_311 . repeat_region 2545 2721 . ? . description=dust scaffold_311 . repeat_region 4440 7712 . ? . description=dust scaffold_311 . repeat_region 7964 9150 . - . description=GypsyPi-1c_I-int scaffold_311 . repeat_region 9152 10161 . ? . description=dust scaffold_311 ensembl protein_coding_gene 948 1756 . + . ID=Phyra85786;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_311000001;logic_name=jgi_phyra1 scaffold_311 ensembl transcript 948 1756 . + . ID=Phyra85786;Parent=Phyra85786;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_311 . CDS 948 1079 . + 0 ID=Phyra85786;Parent=Phyra85786;rank=1 scaffold_311 . exon 948 1079 . + . ID=Phyra85786.1;Parent=Phyra85786;constitutive=1;rank=1 scaffold_311 . CDS 1157 1756 . + 0 ID=Phyra85786;Parent=Phyra85786;rank=2 scaffold_311 . exon 1157 1756 . + . ID=Phyra85786.2;Parent=Phyra85786;constitutive=1;rank=2 scaffold_311 ensembl protein_coding_gene 2058 2491 . - . ID=Phyra85787;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_311000002;logic_name=jgi_phyra1 scaffold_311 ensembl transcript 2058 2491 . - . ID=Phyra85787;Parent=Phyra85787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_311 . CDS 2058 2370 . - 0 ID=Phyra85787;Parent=Phyra85787;rank=2 scaffold_311 . exon 2058 2370 . - . ID=Phyra85787.2;Parent=Phyra85787;constitutive=1;ensembl_phase=2;rank=2 scaffold_311 . CDS 2454 2491 . - 0 ID=Phyra85787;Parent=Phyra85787;rank=1 scaffold_311 . exon 2454 2491 . - . ID=Phyra85787.1;Parent=Phyra85787;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_311 ensembl protein_coding_gene 8451 9029 . - . ID=Phyra85788;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_311000003;logic_name=jgi_phyra1 scaffold_311 ensembl transcript 8451 9029 . - . ID=Phyra85788;Parent=Phyra85788;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_311 . CDS 8451 9029 . - 0 ID=Phyra85788;Parent=Phyra85788;rank=1 scaffold_311 . exon 8451 9029 . - . ID=Phyra85788.1;Parent=Phyra85788;constitutive=1;rank=1 scaffold_311 . biological_region 11192 11199 0.999 - . logic_name=eponine scaffold_311 ensembl protein_coding_gene 17225 17914 . - . ID=Phyra85789;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_311000004;logic_name=jgi_phyra1 scaffold_311 ensembl transcript 17225 17914 . - . ID=Phyra85789;Parent=Phyra85789;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_311 . CDS 17225 17260 . - 0 ID=Phyra85789;Parent=Phyra85789;rank=4 scaffold_311 . exon 17225 17260 . - . ID=Phyra85789.4;Parent=Phyra85789;constitutive=1;rank=4 scaffold_311 . CDS 17334 17497 . - 0 ID=Phyra85789;Parent=Phyra85789;rank=3 scaffold_311 . exon 17334 17497 . - . ID=Phyra85789.3;Parent=Phyra85789;constitutive=1;ensembl_phase=1;rank=3 scaffold_311 . CDS 17539 17556 . - 0 ID=Phyra85789;Parent=Phyra85789;rank=2 scaffold_311 . exon 17539 17556 . - . ID=Phyra85789.2;Parent=Phyra85789;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_311 . CDS 17596 17914 . - 0 ID=Phyra85789;Parent=Phyra85789;rank=1 scaffold_311 . exon 17596 17914 . - . ID=Phyra85789.1;Parent=Phyra85789;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_313 1 18787 scaffold_313 . repeat_region 1204 1253 . ? . description=dust scaffold_313 . repeat_region 3932 3981 . ? . description=dust scaffold_313 . repeat_region 4949 4998 . ? . description=dust scaffold_313 . biological_region 5372 5373 0.999 + . logic_name=eponine scaffold_313 . biological_region 5498 5501 0.999 - . logic_name=eponine scaffold_313 . repeat_region 5925 5974 . ? . description=dust scaffold_313 ensembl protein_coding_gene 5316 6022 . + . ID=Phyra85791;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_313000001;logic_name=jgi_phyra1 scaffold_313 ensembl transcript 5316 6022 . + . ID=Phyra85791;Parent=Phyra85791;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_313 . CDS 5316 5910 . + 0 ID=Phyra85791;Parent=Phyra85791;rank=1 scaffold_313 . exon 5316 5910 . + . ID=Phyra85791.1;Parent=Phyra85791;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_313 . CDS 6015 6022 . + 0 ID=Phyra85791;Parent=Phyra85791;rank=2 scaffold_313 . exon 6015 6022 . + . ID=Phyra85791.2;Parent=Phyra85791;constitutive=1;ensembl_phase=1;rank=2 scaffold_313 ensembl protein_coding_gene 6790 8518 . + . ID=Phyra85792;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_313000002;logic_name=jgi_phyra1 scaffold_313 ensembl transcript 6790 8518 . + . ID=Phyra85792;Parent=Phyra85792;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_313 . CDS 6790 8392 . + 0 ID=Phyra85792;Parent=Phyra85792;rank=1 scaffold_313 . exon 6790 8392 . + . ID=Phyra85792.1;Parent=Phyra85792;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_313 . CDS 8490 8518 . + 0 ID=Phyra85792;Parent=Phyra85792;rank=2 scaffold_313 . exon 8490 8518 . + . ID=Phyra85792.2;Parent=Phyra85792;constitutive=1;ensembl_phase=1;rank=2 scaffold_313 . repeat_region 17828 17847 . ? . description=trf scaffold_313 ensembl protein_coding_gene 10210 11715 . + . ID=Phyra85793;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_313000003;logic_name=jgi_phyra1 scaffold_313 ensembl transcript 10210 11715 . + . ID=Phyra85793;Parent=Phyra85793;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_313 . CDS 10210 11715 . + 0 ID=Phyra85793;Parent=Phyra85793;rank=1 scaffold_313 . exon 10210 11715 . + . ID=Phyra85793.1;Parent=Phyra85793;constitutive=1;rank=1 scaffold_313 ensembl protein_coding_gene 14213 14991 . - . ID=Phyra85794;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_313000004;logic_name=jgi_phyra1 scaffold_313 ensembl transcript 14213 14991 . - . ID=Phyra85794;Parent=Phyra85794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_313 . CDS 14213 14361 . - 0 ID=Phyra85794;Parent=Phyra85794;rank=2 scaffold_313 . exon 14213 14361 . - . ID=Phyra85794.2;Parent=Phyra85794;constitutive=1;ensembl_phase=1;rank=2 scaffold_313 . CDS 14448 14991 . - 0 ID=Phyra85794;Parent=Phyra85794;rank=1 scaffold_313 . exon 14448 14991 . - . ID=Phyra85794.1;Parent=Phyra85794;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_310 1 18805 scaffold_310 . repeat_region 385 410 . ? . description=trf scaffold_310 . repeat_region 1551 6886 . ? . description=dust scaffold_310 . repeat_region 8229 8236 . ? . description=dust scaffold_310 . biological_region 11660 11661 0.999 + . logic_name=eponine scaffold_310 . biological_region 13907 13907 0.999 - . logic_name=eponine scaffold_310 . repeat_region 18398 18695 . - . description=GypsyPi-1c_I-int scaffold_310 ensembl protein_coding_gene 11317 11755 . + . ID=Phyra85784;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_310000001;logic_name=jgi_phyra1 scaffold_310 ensembl transcript 11317 11755 . + . ID=Phyra85784;Parent=Phyra85784;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_310 . CDS 11317 11700 . + 0 ID=Phyra85784;Parent=Phyra85784;rank=1 scaffold_310 . exon 11317 11700 . + . ID=Phyra85784.1;Parent=Phyra85784;constitutive=1;rank=1 scaffold_310 . CDS 11726 11755 . + 0 ID=Phyra85784;Parent=Phyra85784;rank=2 scaffold_310 . exon 11726 11755 . + . ID=Phyra85784.2;Parent=Phyra85784;constitutive=1;rank=2 scaffold_310 ensembl protein_coding_gene 13729 14627 . - . ID=Phyra85785;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_310000002;logic_name=jgi_phyra1 scaffold_310 ensembl transcript 13729 14627 . - . ID=Phyra85785;Parent=Phyra85785;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_310 . CDS 13729 13902 . - 0 ID=Phyra85785;Parent=Phyra85785;rank=5 scaffold_310 . exon 13729 13902 . - . ID=Phyra85785.5;Parent=Phyra85785;constitutive=1;rank=5 scaffold_310 . CDS 13936 14190 . - 0 ID=Phyra85785;Parent=Phyra85785;rank=4 scaffold_310 . exon 13936 14190 . - . ID=Phyra85785.4;Parent=Phyra85785;constitutive=1;rank=4 scaffold_310 . CDS 14230 14448 . - 0 ID=Phyra85785;Parent=Phyra85785;rank=3 scaffold_310 . exon 14230 14448 . - . ID=Phyra85785.3;Parent=Phyra85785;constitutive=1;rank=3 scaffold_310 . CDS 14484 14544 . - 0 ID=Phyra85785;Parent=Phyra85785;rank=2 scaffold_310 . exon 14484 14544 . - . ID=Phyra85785.2;Parent=Phyra85785;constitutive=1;ensembl_phase=2;rank=2 scaffold_310 . CDS 14617 14627 . - 0 ID=Phyra85785;Parent=Phyra85785;rank=1 scaffold_310 . exon 14617 14627 . - . ID=Phyra85785.1;Parent=Phyra85785;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_309 1 18845 scaffold_309 . repeat_region 2574 2623 . ? . description=dust scaffold_309 . biological_region 3206 3209 0.999 + . logic_name=eponine scaffold_309 . repeat_region 7433 7443 . ? . description=dust scaffold_309 . repeat_region 7992 8018 . ? . description=trf scaffold_309 ensembl protein_coding_gene 4882 5786 . - . ID=Phyra47086;biotype=protein_coding;external_name=gwEuk.309.3.1;logic_name=jgi_phyra1 scaffold_309 ensembl transcript 4882 5786 . - . ID=Phyra47086;Parent=Phyra47086;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_309 . CDS 4882 5034 . - 0 ID=Phyra47086;Parent=Phyra47086;rank=6 scaffold_309 . exon 4882 5034 . - . ID=Phyra47086.6;Parent=Phyra47086;constitutive=1;rank=6 scaffold_309 . CDS 5104 5283 . - 0 ID=Phyra47086;Parent=Phyra47086;rank=5 scaffold_309 . exon 5104 5283 . - . ID=Phyra47086.5;Parent=Phyra47086;constitutive=1;rank=5 scaffold_309 . CDS 5374 5425 . - 0 ID=Phyra47086;Parent=Phyra47086;rank=4 scaffold_309 . exon 5374 5425 . - . ID=Phyra47086.4;Parent=Phyra47086;constitutive=1;ensembl_phase=2;rank=4 scaffold_309 . CDS 5487 5540 . - 0 ID=Phyra47086;Parent=Phyra47086;rank=3 scaffold_309 . exon 5487 5540 . - . ID=Phyra47086.3;Parent=Phyra47086;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_309 . CDS 5620 5693 . - 0 ID=Phyra47086;Parent=Phyra47086;rank=2 scaffold_309 . exon 5620 5693 . - . ID=Phyra47086.2;Parent=Phyra47086;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_309 . CDS 5754 5786 . - 0 ID=Phyra47086;Parent=Phyra47086;rank=1 scaffold_309 . exon 5754 5786 . - . ID=Phyra47086.1;Parent=Phyra47086;constitutive=1;rank=1 scaffold_309 ensembl protein_coding_gene 2983 4059 . + . ID=Phyra97168;biotype=protein_coding;external_name=C_scaffold_309000001;logic_name=jgi_phyra1 scaffold_309 ensembl transcript 2983 4059 . + . ID=Phyra97168;Parent=Phyra97168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_309 . CDS 2983 4059 . + 0 ID=Phyra97168;Parent=Phyra97168;rank=1 scaffold_309 . exon 2983 4059 . + . ID=Phyra97168.1;Parent=Phyra97168;constitutive=1;rank=1 scaffold_309 ensembl protein_coding_gene 17799 18671 . - . ID=Phyra72372;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_309000001;logic_name=jgi_phyra1 scaffold_309 ensembl transcript 17799 18671 . - . ID=Phyra72372;Parent=Phyra72372;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_309 . CDS 17799 18671 . - 0 ID=Phyra72372;Parent=Phyra72372;rank=1 scaffold_309 . exon 17799 18671 . - . ID=Phyra72372.1;Parent=Phyra72372;constitutive=1;rank=1 scaffold_309 ensembl protein_coding_gene 9533 11270 . - . ID=Phyra85779;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_309000002;logic_name=jgi_phyra1 scaffold_309 ensembl transcript 9533 11270 . - . ID=Phyra85779;Parent=Phyra85779;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_309 . CDS 9533 11003 . - 0 ID=Phyra85779;Parent=Phyra85779;rank=2 scaffold_309 . exon 9533 11003 . - . ID=Phyra85779.2;Parent=Phyra85779;constitutive=1;ensembl_phase=2;rank=2 scaffold_309 . CDS 11083 11270 . - 0 ID=Phyra85779;Parent=Phyra85779;rank=1 scaffold_309 . exon 11083 11270 . - . ID=Phyra85779.1;Parent=Phyra85779;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_309 ensembl protein_coding_gene 17063 17416 . - . ID=Phyra85782;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_309000005;logic_name=jgi_phyra1 scaffold_309 ensembl transcript 17063 17416 . - . ID=Phyra85782;Parent=Phyra85782;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_309 . CDS 17063 17416 . - 0 ID=Phyra85782;Parent=Phyra85782;rank=1 scaffold_309 . exon 17063 17416 . - . ID=Phyra85782.1;Parent=Phyra85782;constitutive=1;rank=1 scaffold_309 ensembl protein_coding_gene 11659 12561 . - . ID=Phyra97170;biotype=protein_coding;external_name=C_scaffold_309000003;logic_name=jgi_phyra1 scaffold_309 ensembl transcript 11659 12561 . - . ID=Phyra97170;Parent=Phyra97170;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_309 . CDS 11659 12561 . - 0 ID=Phyra97170;Parent=Phyra97170;rank=1 scaffold_309 . exon 11659 12561 . - . ID=Phyra97170.1;Parent=Phyra97170;constitutive=1;rank=1 scaffold_309 ensembl protein_coding_gene 12776 14130 . + . ID=Phyra97171;biotype=protein_coding;external_name=C_scaffold_309000004;logic_name=jgi_phyra1 scaffold_309 ensembl transcript 12776 14130 . + . ID=Phyra97171;Parent=Phyra97171;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_309 . CDS 12776 12835 . + 0 ID=Phyra97171;Parent=Phyra97171;rank=1 scaffold_309 . exon 12776 12835 . + . ID=Phyra97171.1;Parent=Phyra97171;constitutive=1;rank=1 scaffold_309 . CDS 13013 13779 . + 0 ID=Phyra97171;Parent=Phyra97171;rank=2 scaffold_309 . exon 13013 13779 . + . ID=Phyra97171.2;Parent=Phyra97171;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_309 . CDS 13844 14033 . + 0 ID=Phyra97171;Parent=Phyra97171;rank=3 scaffold_309 . exon 13844 14033 . + . ID=Phyra97171.3;Parent=Phyra97171;constitutive=1;ensembl_phase=2;rank=3 scaffold_309 . CDS 14107 14130 . + 0 ID=Phyra97171;Parent=Phyra97171;rank=4 scaffold_309 . exon 14107 14130 . + . ID=Phyra97171.4;Parent=Phyra97171;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_308 1 18884 scaffold_308 . repeat_region 3323 3369 . ? . description=trf scaffold_308 . biological_region 4144 4147 0.999 - . logic_name=eponine scaffold_308 . repeat_region 4902 4999 . ? . description=trf scaffold_308 . repeat_region 5397 5420 . ? . description=dust scaffold_308 . repeat_region 5439 5471 . ? . description=trf scaffold_308 . repeat_region 7196 7203 . ? . description=dust scaffold_308 ensembl protein_coding_gene 2064 2983 . - . ID=Phyra85775;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_308000001;logic_name=jgi_phyra1 scaffold_308 ensembl transcript 2064 2983 . - . ID=Phyra85775;Parent=Phyra85775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_308 . CDS 2064 2075 . - 0 ID=Phyra85775;Parent=Phyra85775;rank=2 scaffold_308 . exon 2064 2075 . - . ID=Phyra85775.2;Parent=Phyra85775;constitutive=1;rank=2 scaffold_308 . CDS 2168 2983 . - 0 ID=Phyra85775;Parent=Phyra85775;rank=1 scaffold_308 . exon 2168 2983 . - . ID=Phyra85775.1;Parent=Phyra85775;constitutive=1;rank=1 scaffold_308 ensembl protein_coding_gene 3384 4920 . + . ID=Phyra85776;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_308000002;logic_name=jgi_phyra1 scaffold_308 ensembl transcript 3384 4920 . + . ID=Phyra85776;Parent=Phyra85776;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_308 . CDS 3384 3708 . + 0 ID=Phyra85776;Parent=Phyra85776;rank=1 scaffold_308 . exon 3384 3708 . + . ID=Phyra85776.1;Parent=Phyra85776;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_308 . CDS 3810 3923 . + 0 ID=Phyra85776;Parent=Phyra85776;rank=2 scaffold_308 . exon 3810 3923 . + . ID=Phyra85776.2;Parent=Phyra85776;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_308 . CDS 4433 4920 . + 0 ID=Phyra85776;Parent=Phyra85776;rank=3 scaffold_308 . exon 4433 4920 . + . ID=Phyra85776.3;Parent=Phyra85776;constitutive=1;ensembl_phase=1;rank=3 scaffold_308 ensembl protein_coding_gene 10392 10766 . - . ID=Phyra85777;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_308000003;logic_name=jgi_phyra1 scaffold_308 ensembl transcript 10392 10766 . - . ID=Phyra85777;Parent=Phyra85777;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_308 . CDS 10392 10766 . - 0 ID=Phyra85777;Parent=Phyra85777;rank=1 scaffold_308 . exon 10392 10766 . - . ID=Phyra85777.1;Parent=Phyra85777;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_307 1 19018 scaffold_307 . repeat_region 904 953 . ? . description=dust scaffold_307 . biological_region 1534 1537 0.999 - . logic_name=eponine scaffold_307 . repeat_region 1912 1931 . ? . description=trf scaffold_307 . biological_region 2303 2307 0.999 + . logic_name=eponine scaffold_307 . biological_region 2370 2372 0.999 - . logic_name=eponine scaffold_307 . repeat_region 2430 2479 . ? . description=dust scaffold_307 . repeat_region 3090 3098 . ? . description=dust scaffold_307 . biological_region 4647 4652 0.999 + . logic_name=eponine scaffold_307 . repeat_region 6119 6127 . ? . description=dust scaffold_307 . repeat_region 7837 7845 . ? . description=dust scaffold_307 . repeat_region 8208 8257 . ? . description=dust scaffold_307 ensembl protein_coding_gene 561 1764 . - . ID=Phyra85769;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_307000001;logic_name=jgi_phyra1 scaffold_307 ensembl transcript 561 1764 . - . ID=Phyra85769;Parent=Phyra85769;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_307 . CDS 561 570 . - 0 ID=Phyra85769;Parent=Phyra85769;rank=2 scaffold_307 . exon 561 570 . - . ID=Phyra85769.2;Parent=Phyra85769;constitutive=1;ensembl_phase=2;rank=2 scaffold_307 . CDS 959 1764 . - 0 ID=Phyra85769;Parent=Phyra85769;rank=1 scaffold_307 . exon 959 1764 . - . ID=Phyra85769.1;Parent=Phyra85769;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_307 ensembl protein_coding_gene 2190 3028 . + . ID=Phyra85770;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_307000002;logic_name=jgi_phyra1 scaffold_307 ensembl transcript 2190 3028 . + . ID=Phyra85770;Parent=Phyra85770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_307 . CDS 2190 2213 . + 0 ID=Phyra85770;Parent=Phyra85770;rank=1 scaffold_307 . exon 2190 2213 . + . ID=Phyra85770.1;Parent=Phyra85770;constitutive=1;rank=1 scaffold_307 . CDS 2582 3028 . + 0 ID=Phyra85770;Parent=Phyra85770;rank=2 scaffold_307 . exon 2582 3028 . + . ID=Phyra85770.2;Parent=Phyra85770;constitutive=1;rank=2 scaffold_307 ensembl protein_coding_gene 9689 10544 . - . ID=Phyra85771;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_307000003;logic_name=jgi_phyra1 scaffold_307 ensembl transcript 9689 10544 . - . ID=Phyra85771;Parent=Phyra85771;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_307 . CDS 9689 9725 . - 0 ID=Phyra85771;Parent=Phyra85771;rank=2 scaffold_307 . exon 9689 9725 . - . ID=Phyra85771.2;Parent=Phyra85771;constitutive=1;ensembl_phase=2;rank=2 scaffold_307 . CDS 9796 10544 . - 0 ID=Phyra85771;Parent=Phyra85771;rank=1 scaffold_307 . exon 9796 10544 . - . ID=Phyra85771.1;Parent=Phyra85771;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_307 ensembl protein_coding_gene 11763 12315 . + . ID=Phyra85772;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_307000004;logic_name=jgi_phyra1 scaffold_307 ensembl transcript 11763 12315 . + . ID=Phyra85772;Parent=Phyra85772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_307 . CDS 11763 12152 . + 0 ID=Phyra85772;Parent=Phyra85772;rank=1 scaffold_307 . exon 11763 12152 . + . ID=Phyra85772.1;Parent=Phyra85772;constitutive=1;rank=1 scaffold_307 . CDS 12202 12315 . + 0 ID=Phyra85772;Parent=Phyra85772;rank=2 scaffold_307 . exon 12202 12315 . + . ID=Phyra85772.2;Parent=Phyra85772;constitutive=1;rank=2 scaffold_307 ensembl protein_coding_gene 13239 14699 . - . ID=Phyra85773;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_307000005;logic_name=jgi_phyra1 scaffold_307 ensembl transcript 13239 14699 . - . ID=Phyra85773;Parent=Phyra85773;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_307 . CDS 13239 14699 . - 0 ID=Phyra85773;Parent=Phyra85773;rank=1 scaffold_307 . exon 13239 14699 . - . ID=Phyra85773.1;Parent=Phyra85773;constitutive=1;rank=1 scaffold_307 ensembl protein_coding_gene 16092 17555 . - . ID=Phyra85774;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_307000006;logic_name=jgi_phyra1 scaffold_307 ensembl transcript 16092 17555 . - . ID=Phyra85774;Parent=Phyra85774;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_307 . CDS 16092 17555 . - 0 ID=Phyra85774;Parent=Phyra85774;rank=1 scaffold_307 . exon 16092 17555 . - . ID=Phyra85774.1;Parent=Phyra85774;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_300 1 19051 scaffold_300 . repeat_region 2 619 . - . description=GypsyPi-1c_I-int scaffold_300 . biological_region 383 384 0.999 - . logic_name=eponine scaffold_300 . biological_region 829 830 0.999 - . logic_name=eponine scaffold_300 . repeat_region 1098 2358 . - . description=GypsyPi-1c_I-int scaffold_300 . repeat_region 3365 3375 . ? . description=dust scaffold_300 . repeat_region 3438 3445 . ? . description=dust scaffold_300 . repeat_region 4830 5017 . ? . description=dust scaffold_300 . repeat_region 5145 5197 . ? . description=trf scaffold_300 . biological_region 5382 5382 0.999 - . logic_name=eponine scaffold_300 . biological_region 5435 5439 0.999 + . logic_name=eponine scaffold_300 . biological_region 5558 5562 0.999 + . logic_name=eponine scaffold_300 . biological_region 5613 5614 0.999 + . logic_name=eponine scaffold_300 . repeat_region 5762 8152 . ? . description=dust scaffold_300 ensembl pseudogene 9108 10744 . - . ID=Phyra47061;biotype=pseudogene;external_name=gwEuk.300.2.1;logic_name=jgi_phyra1 scaffold_300 ensembl pseudogene 9108 10744 . - . ID=Phyra47061;Parent=Phyra47061;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_300 . exon 9108 9805 . - . ID=Phyra47061.3;Parent=Phyra47061;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_300 ensembl protein_coding_gene 1634 2371 . - . ID=Phyra85747;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_300000001;logic_name=jgi_phyra1 scaffold_300 ensembl transcript 1634 2371 . - . ID=Phyra85747;Parent=Phyra85747;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_300 . CDS 1634 2371 . - 0 ID=Phyra85747;Parent=Phyra85747;rank=1 scaffold_300 . exon 1634 2371 . - . ID=Phyra85747.1;Parent=Phyra85747;constitutive=1;rank=1 scaffold_300 . exon 9863 10213 . - . ID=Phyra47061.2;Parent=Phyra47061;constitutive=1;rank=2 scaffold_300 . exon 10334 10744 . - . ID=Phyra47061.1;Parent=Phyra47061;constitutive=1;rank=1 scaffold_300 ensembl protein_coding_gene 10928 11452 . + . ID=Phyra85748;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_300000002;logic_name=jgi_phyra1 scaffold_300 ensembl transcript 10928 11452 . + . ID=Phyra85748;Parent=Phyra85748;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_300 . CDS 10928 11452 . + 0 ID=Phyra85748;Parent=Phyra85748;rank=1 scaffold_300 . exon 10928 11452 . + . ID=Phyra85748.1;Parent=Phyra85748;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_306 1 19155 scaffold_306 . repeat_region 4014 4058 . ? . description=trf scaffold_306 ensembl protein_coding_gene 2327 5477 . - . ID=Phyra85765;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_306000001;logic_name=jgi_phyra1 scaffold_306 ensembl transcript 2327 5477 . - . ID=Phyra85765;Parent=Phyra85765;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_306 . CDS 2327 2344 . - 0 ID=Phyra85765;Parent=Phyra85765;rank=2 scaffold_306 . exon 2327 2344 . - . ID=Phyra85765.2;Parent=Phyra85765;constitutive=1;rank=2 scaffold_306 . CDS 2463 5477 . - 0 ID=Phyra85765;Parent=Phyra85765;rank=1 scaffold_306 . exon 2463 5477 . - . ID=Phyra85765.1;Parent=Phyra85765;constitutive=1;rank=1 scaffold_306 . biological_region 12140 12141 0.999 + . logic_name=eponine scaffold_306 . repeat_region 14107 14299 . ? . description=dust scaffold_306 . repeat_region 15919 15926 . ? . description=dust scaffold_306 . repeat_region 15969 16399 . ? . description=dust scaffold_306 . biological_region 18745 18746 0.999 - . logic_name=eponine scaffold_306 . biological_region 18800 18802 0.999 + . logic_name=eponine scaffold_306 . biological_region 18851 18854 0.999 + . logic_name=eponine scaffold_306 . biological_region 18881 18883 0.999 - . logic_name=eponine scaffold_306 . biological_region 18922 18926 0.999 - . logic_name=eponine scaffold_306 ensembl protein_coding_gene 14443 14829 . + . ID=Phyra47082;biotype=protein_coding;external_name=gwEuk.306.2.1;logic_name=jgi_phyra1 scaffold_306 ensembl transcript 14443 14829 . + . ID=Phyra47082;Parent=Phyra47082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_306 . CDS 14443 14829 . + 0 ID=Phyra47082;Parent=Phyra47082;rank=1 scaffold_306 . exon 14443 14829 . + . ID=Phyra47082.1;Parent=Phyra47082;constitutive=1;rank=1 scaffold_306 ensembl protein_coding_gene 11018 14030 . - . ID=Phyra85766;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_306000002;logic_name=jgi_phyra1 scaffold_306 ensembl transcript 11018 14030 . - . ID=Phyra85766;Parent=Phyra85766;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_306 . CDS 11018 11062 . - 0 ID=Phyra85766;Parent=Phyra85766;rank=3 scaffold_306 . exon 11018 11062 . - . ID=Phyra85766.3;Parent=Phyra85766;constitutive=1;rank=3 scaffold_306 . CDS 11427 11945 . - 0 ID=Phyra85766;Parent=Phyra85766;rank=2 scaffold_306 . exon 11427 11945 . - . ID=Phyra85766.2;Parent=Phyra85766;constitutive=1;rank=2 scaffold_306 . CDS 12609 14030 . - 0 ID=Phyra85766;Parent=Phyra85766;rank=1 scaffold_306 . exon 12609 14030 . - . ID=Phyra85766.1;Parent=Phyra85766;constitutive=1;rank=1 scaffold_306 ensembl protein_coding_gene 15055 18930 . - . ID=Phyra85768;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_306000004;logic_name=jgi_phyra1 scaffold_306 ensembl transcript 15055 18930 . - . ID=Phyra85768;Parent=Phyra85768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_306 . CDS 15055 15219 . - 0 ID=Phyra85768;Parent=Phyra85768;rank=8 scaffold_306 . exon 15055 15219 . - . ID=Phyra85768.8;Parent=Phyra85768;constitutive=1;rank=8 scaffold_306 . CDS 15293 15411 . - 0 ID=Phyra85768;Parent=Phyra85768;rank=7 scaffold_306 . exon 15293 15411 . - . ID=Phyra85768.7;Parent=Phyra85768;constitutive=1;ensembl_phase=1;rank=7 scaffold_306 . CDS 15481 15634 . - 0 ID=Phyra85768;Parent=Phyra85768;rank=6 scaffold_306 . exon 15481 15634 . - . ID=Phyra85768.6;Parent=Phyra85768;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_306 . CDS 15696 15914 . - 0 ID=Phyra85768;Parent=Phyra85768;rank=5 scaffold_306 . exon 15696 15914 . - . ID=Phyra85768.5;Parent=Phyra85768;constitutive=1;rank=5 scaffold_306 . CDS 16539 16691 . - 0 ID=Phyra85768;Parent=Phyra85768;rank=4 scaffold_306 . exon 16539 16691 . - . ID=Phyra85768.4;Parent=Phyra85768;constitutive=1;rank=4 scaffold_306 . CDS 16769 18166 . - 0 ID=Phyra85768;Parent=Phyra85768;rank=3 scaffold_306 . exon 16769 18166 . - . ID=Phyra85768.3;Parent=Phyra85768;constitutive=1;rank=3 scaffold_306 . CDS 18236 18368 . - 0 ID=Phyra85768;Parent=Phyra85768;rank=2 scaffold_306 . exon 18236 18368 . - . ID=Phyra85768.2;Parent=Phyra85768;constitutive=1;ensembl_phase=2;rank=2 scaffold_306 . CDS 18440 18930 . - 0 ID=Phyra85768;Parent=Phyra85768;rank=1 scaffold_306 . exon 18440 18930 . - . ID=Phyra85768.1;Parent=Phyra85768;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_305 1 19197 scaffold_305 . repeat_region 935 991 . ? . description=dust scaffold_305 . repeat_region 935 992 . ? . description=trf scaffold_305 . repeat_region 1205 4013 . ? . description=dust scaffold_305 . biological_region 4707 4711 0.999 + . logic_name=eponine scaffold_305 . biological_region 6009 6013 0.999 + . logic_name=eponine scaffold_305 . biological_region 7991 7991 0.999 - . logic_name=eponine scaffold_305 . biological_region 8491 8492 0.999 + . logic_name=eponine scaffold_305 . biological_region 9582 9584 0.999 + . logic_name=eponine scaffold_305 ensembl protein_coding_gene 4657 8733 . - . ID=Phyra85763;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_305000001;logic_name=jgi_phyra1 scaffold_305 ensembl transcript 4657 8733 . - . ID=Phyra85763;Parent=Phyra85763;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_305 . CDS 4657 8733 . - 0 ID=Phyra85763;Parent=Phyra85763;rank=1 scaffold_305 . exon 4657 8733 . - . ID=Phyra85763.1;Parent=Phyra85763;constitutive=1;rank=1 scaffold_305 ensembl protein_coding_gene 12362 13795 . + . ID=Phyra85764;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_305000002;logic_name=jgi_phyra1 scaffold_305 ensembl transcript 12362 13795 . + . ID=Phyra85764;Parent=Phyra85764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_305 . CDS 12362 13795 . + 0 ID=Phyra85764;Parent=Phyra85764;rank=1 scaffold_305 . exon 12362 13795 . + . ID=Phyra85764.1;Parent=Phyra85764;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_301 1 19264 scaffold_301 . biological_region 69 72 0.999 + . logic_name=eponine scaffold_301 . repeat_region 432 466 . ? . description=trf scaffold_301 . biological_region 2381 2382 0.999 - . logic_name=eponine scaffold_301 . biological_region 8580 8584 0.999 + . logic_name=eponine scaffold_301 . biological_region 8894 8896 0.999 - . logic_name=eponine scaffold_301 ensembl protein_coding_gene 1 4560 . + . ID=Phyra85749;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_301000001;logic_name=jgi_phyra1 scaffold_301 ensembl transcript 1 4560 . + . ID=Phyra85749;Parent=Phyra85749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_301 . exon 1 1590 . + . ID=Phyra85749.1;Parent=Phyra85749;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_301 . CDS 2 1590 . + 0 ID=Phyra85749;Parent=Phyra85749;rank=1 scaffold_301 . CDS 1670 3115 . + 0 ID=Phyra85749;Parent=Phyra85749;rank=2 scaffold_301 . exon 1670 3115 . + . ID=Phyra85749.2;Parent=Phyra85749;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_301 . CDS 3178 3367 . + 0 ID=Phyra85749;Parent=Phyra85749;rank=3 scaffold_301 . exon 3178 3367 . + . ID=Phyra85749.3;Parent=Phyra85749;constitutive=1;ensembl_phase=2;rank=3 scaffold_301 . CDS 3442 3687 . + 0 ID=Phyra85749;Parent=Phyra85749;rank=4 scaffold_301 . exon 3442 3687 . + . ID=Phyra85749.4;Parent=Phyra85749;constitutive=1;rank=4 scaffold_301 . CDS 3754 4560 . + 0 ID=Phyra85749;Parent=Phyra85749;rank=5 scaffold_301 . exon 3754 4560 . + . ID=Phyra85749.5;Parent=Phyra85749;constitutive=1;rank=5 scaffold_301 ensembl protein_coding_gene 4686 8919 . - . ID=Phyra85750;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_301000002;logic_name=jgi_phyra1 scaffold_301 ensembl transcript 4686 8919 . - . ID=Phyra85750;Parent=Phyra85750;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_301 . CDS 4686 4880 . - 0 ID=Phyra85750;Parent=Phyra85750;rank=4 scaffold_301 . exon 4686 4880 . - . ID=Phyra85750.4;Parent=Phyra85750;constitutive=1;rank=4 scaffold_301 . CDS 4950 5325 . - 0 ID=Phyra85750;Parent=Phyra85750;rank=3 scaffold_301 . exon 4950 5325 . - . ID=Phyra85750.3;Parent=Phyra85750;constitutive=1;ensembl_phase=2;rank=3 scaffold_301 . CDS 5410 8171 . - 0 ID=Phyra85750;Parent=Phyra85750;rank=2 scaffold_301 . exon 5410 8171 . - . ID=Phyra85750.2;Parent=Phyra85750;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_301 . CDS 8257 8919 . - 0 ID=Phyra85750;Parent=Phyra85750;rank=1 scaffold_301 . exon 8257 8919 . - . ID=Phyra85750.1;Parent=Phyra85750;constitutive=1;rank=1 scaffold_301 . repeat_region 10058 10106 . ? . description=dust scaffold_301 . repeat_region 14564 14613 . ? . description=dust scaffold_301 . repeat_region 16262 16311 . ? . description=dust scaffold_301 . repeat_region 17360 17915 . ? . description=dust scaffold_301 ensembl protein_coding_gene 10089 15645 . + . ID=Phyra85751;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_301000003;logic_name=jgi_phyra1 scaffold_301 ensembl transcript 10089 15645 . + . ID=Phyra85751;Parent=Phyra85751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_301 . CDS 10089 12378 . + 0 ID=Phyra85751;Parent=Phyra85751;rank=1 scaffold_301 . exon 10089 12378 . + . ID=Phyra85751.1;Parent=Phyra85751;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_301 . CDS 13170 13319 . + 0 ID=Phyra85751;Parent=Phyra85751;rank=2 scaffold_301 . exon 13170 13319 . + . ID=Phyra85751.2;Parent=Phyra85751;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_301 . CDS 13659 14523 . + 0 ID=Phyra85751;Parent=Phyra85751;rank=3 scaffold_301 . exon 13659 14523 . + . ID=Phyra85751.3;Parent=Phyra85751;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_301 . CDS 14684 15183 . + 0 ID=Phyra85751;Parent=Phyra85751;rank=4 scaffold_301 . exon 14684 15183 . + . ID=Phyra85751.4;Parent=Phyra85751;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_301 . CDS 15269 15559 . + 0 ID=Phyra85751;Parent=Phyra85751;rank=5 scaffold_301 . exon 15269 15559 . + . ID=Phyra85751.5;Parent=Phyra85751;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_301 . CDS 15623 15645 . + 0 ID=Phyra85751;Parent=Phyra85751;rank=6 scaffold_301 . exon 15623 15645 . + . ID=Phyra85751.6;Parent=Phyra85751;constitutive=1;ensembl_phase=1;rank=6 ##gff-version 3 ##sequence-region scaffold_304 1 19344 scaffold_304 . repeat_region 1562 1596 . ? . description=trf scaffold_304 . repeat_region 1802 4360 . ? . description=dust scaffold_304 . biological_region 15053 15057 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_303 1 19375 scaffold_303 . biological_region 421 421 0.999 - . logic_name=eponine scaffold_303 . biological_region 557 560 0.999 - . logic_name=eponine scaffold_303 . biological_region 7128 7131 0.999 - . logic_name=eponine scaffold_303 ensembl protein_coding_gene 3146 3385 . - . ID=Phyra47063;biotype=protein_coding;external_name=gwEuk.303.1.1;logic_name=jgi_phyra1 scaffold_303 ensembl transcript 3146 3385 . - . ID=Phyra47063;Parent=Phyra47063;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_303 . CDS 3146 3385 . - 0 ID=Phyra47063;Parent=Phyra47063;rank=1 scaffold_303 . exon 3146 3385 . - . ID=Phyra47063.1;Parent=Phyra47063;constitutive=1;rank=1 scaffold_303 ensembl protein_coding_gene 5126 6730 . - . ID=Phyra47066;biotype=protein_coding;external_name=gwEuk.303.4.1;logic_name=jgi_phyra1 scaffold_303 ensembl transcript 5126 6730 . - . ID=Phyra47066;Parent=Phyra47066;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_303 . CDS 5126 6730 . - 0 ID=Phyra47066;Parent=Phyra47066;rank=1 scaffold_303 . exon 5126 6730 . - . ID=Phyra47066.1;Parent=Phyra47066;constitutive=1;rank=1 scaffold_303 ensembl protein_coding_gene 1 697 . + . ID=Phyra85755;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_303000001;logic_name=jgi_phyra1 scaffold_303 ensembl transcript 1 697 . + . ID=Phyra85755;Parent=Phyra85755;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_303 . exon 1 143 . + . ID=Phyra85755.1;Parent=Phyra85755;constitutive=1;ensembl_phase=-1;rank=1 scaffold_303 . CDS 3 143 . + 0 ID=Phyra85755;Parent=Phyra85755;rank=1 scaffold_303 . CDS 287 439 . + 0 ID=Phyra85755;Parent=Phyra85755;rank=2 scaffold_303 . exon 287 439 . + . ID=Phyra85755.2;Parent=Phyra85755;constitutive=1;rank=2 scaffold_303 . CDS 512 697 . + 0 ID=Phyra85755;Parent=Phyra85755;rank=3 scaffold_303 . exon 512 697 . + . ID=Phyra85755.3;Parent=Phyra85755;constitutive=1;rank=3 scaffold_303 ensembl protein_coding_gene 7468 8676 . + . ID=Phyra85757;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_303000003;logic_name=jgi_phyra1 scaffold_303 ensembl transcript 7468 8676 . + . ID=Phyra85757;Parent=Phyra85757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_303 . CDS 7468 8676 . + 0 ID=Phyra85757;Parent=Phyra85757;rank=1 scaffold_303 . exon 7468 8676 . + . ID=Phyra85757.1;Parent=Phyra85757;constitutive=1;rank=1 scaffold_303 ensembl protein_coding_gene 8746 10621 . - . ID=Phyra85758;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_303000004;logic_name=jgi_phyra1 scaffold_303 ensembl transcript 8746 10621 . - . ID=Phyra85758;Parent=Phyra85758;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_303 . CDS 8746 9113 . - 0 ID=Phyra85758;Parent=Phyra85758;rank=7 scaffold_303 . exon 8746 9113 . - . ID=Phyra85758.7;Parent=Phyra85758;constitutive=1;ensembl_phase=1;rank=7 scaffold_303 . CDS 9328 9427 . - 0 ID=Phyra85758;Parent=Phyra85758;rank=6 scaffold_303 . exon 9328 9427 . - . ID=Phyra85758.6;Parent=Phyra85758;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_303 . CDS 9500 9838 . - 0 ID=Phyra85758;Parent=Phyra85758;rank=5 scaffold_303 . exon 9500 9838 . - . ID=Phyra85758.5;Parent=Phyra85758;constitutive=1;rank=5 scaffold_303 . CDS 9903 10019 . - 0 ID=Phyra85758;Parent=Phyra85758;rank=4 scaffold_303 . CDS 10255 10344 . - 0 ID=Phyra85758;Parent=Phyra85758;rank=3 scaffold_303 . CDS 10406 10543 . - 0 ID=Phyra85758;Parent=Phyra85758;rank=2 scaffold_303 . CDS 10610 10621 . - 0 ID=Phyra85758;Parent=Phyra85758;rank=1 scaffold_303 ensembl protein_coding_gene 10920 12123 . + . ID=Phyra47070;biotype=protein_coding;external_name=gwEuk.303.8.1;logic_name=jgi_phyra1 scaffold_303 ensembl transcript 10920 12123 . + . ID=Phyra47070;Parent=Phyra47070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_303 . CDS 10920 11243 . + 0 ID=Phyra47070;Parent=Phyra47070;rank=1 scaffold_303 . exon 10920 11243 . + . ID=Phyra47070.1;Parent=Phyra47070;constitutive=1;rank=1 scaffold_303 . CDS 11311 11547 . + 0 ID=Phyra47070;Parent=Phyra47070;rank=2 scaffold_303 . exon 11311 11547 . + . ID=Phyra47070.2;Parent=Phyra47070;constitutive=1;rank=2 scaffold_303 . CDS 11616 11676 . + 0 ID=Phyra47070;Parent=Phyra47070;rank=3 scaffold_303 . exon 11616 11676 . + . ID=Phyra47070.3;Parent=Phyra47070;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_303 . CDS 11753 11826 . + 0 ID=Phyra47070;Parent=Phyra47070;rank=4 scaffold_303 . exon 11753 11826 . + . ID=Phyra47070.4;Parent=Phyra47070;constitutive=1;ensembl_phase=1;rank=4 scaffold_303 . CDS 11890 12123 . + 0 ID=Phyra47070;Parent=Phyra47070;rank=5 scaffold_303 . exon 11890 12123 . + . ID=Phyra47070.5;Parent=Phyra47070;constitutive=1;rank=5 scaffold_303 ensembl protein_coding_gene 12596 12742 . + . ID=Phyra47071;biotype=protein_coding;external_name=gwEuk.303.9.1;logic_name=jgi_phyra1 scaffold_303 ensembl transcript 12596 12742 . + . ID=Phyra47071;Parent=Phyra47071;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_303 . CDS 12596 12742 . + 0 ID=Phyra47071;Parent=Phyra47071;rank=1 scaffold_303 . exon 12596 12742 . + . ID=Phyra47071.1;Parent=Phyra47071;constitutive=1;rank=1 scaffold_303 ensembl protein_coding_gene 15687 16694 . - . ID=Phyra47075;biotype=protein_coding;external_name=gwEuk.303.13.1;logic_name=jgi_phyra1 scaffold_303 ensembl transcript 15687 16694 . - . ID=Phyra47075;Parent=Phyra47075;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_303 . CDS 15687 16694 . - 0 ID=Phyra47075;Parent=Phyra47075;rank=1 scaffold_303 . exon 15687 16694 . - . ID=Phyra47075.1;Parent=Phyra47075;constitutive=1;rank=1 scaffold_303 . exon 9903 10019 . - . ID=Phyra85758.4;Parent=Phyra85758;constitutive=1;rank=4 scaffold_303 . exon 10255 10344 . - . ID=Phyra85758.3;Parent=Phyra85758;constitutive=1;rank=3 scaffold_303 . exon 10406 10543 . - . ID=Phyra85758.2;Parent=Phyra85758;constitutive=1;rank=2 scaffold_303 . exon 10610 10621 . - . ID=Phyra85758.1;Parent=Phyra85758;constitutive=1;rank=1 scaffold_303 ensembl protein_coding_gene 17140 19161 . - . ID=Phyra85762;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_303000008;logic_name=jgi_phyra1 scaffold_303 ensembl transcript 17140 19161 . - . ID=Phyra85762;Parent=Phyra85762;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_303 . CDS 17140 19161 . - 0 ID=Phyra85762;Parent=Phyra85762;rank=1 scaffold_303 . exon 17140 19161 . - . ID=Phyra85762.1;Parent=Phyra85762;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_302 1 19525 scaffold_302 . biological_region 266 267 0.999 - . logic_name=eponine scaffold_302 . repeat_region 1598 2890 . ? . description=dust scaffold_302 . repeat_region 6195 6212 . ? . description=dust scaffold_302 . repeat_region 6275 6284 . ? . description=dust scaffold_302 ensembl protein_coding_gene 31 1356 . + . ID=Phyra85752;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_302000001;logic_name=jgi_phyra1 scaffold_302 ensembl transcript 31 1356 . + . ID=Phyra85752;Parent=Phyra85752;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_302 . CDS 31 1356 . + 0 ID=Phyra85752;Parent=Phyra85752;rank=1 scaffold_302 . exon 31 1356 . + . ID=Phyra85752.1;Parent=Phyra85752;constitutive=1;rank=1 scaffold_302 ensembl protein_coding_gene 3128 4863 . + . ID=Phyra85753;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_302000002;logic_name=jgi_phyra1 scaffold_302 ensembl transcript 3128 4863 . + . ID=Phyra85753;Parent=Phyra85753;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_302 . CDS 3128 3255 . + 0 ID=Phyra85753;Parent=Phyra85753;rank=1 scaffold_302 . exon 3128 3255 . + . ID=Phyra85753.1;Parent=Phyra85753;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_302 . CDS 3313 3759 . + 0 ID=Phyra85753;Parent=Phyra85753;rank=2 scaffold_302 . exon 3313 3759 . + . ID=Phyra85753.2;Parent=Phyra85753;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_302 . CDS 3855 4863 . + 0 ID=Phyra85753;Parent=Phyra85753;rank=3 scaffold_302 . exon 3855 4863 . + . ID=Phyra85753.3;Parent=Phyra85753;constitutive=1;ensembl_phase=2;rank=3 scaffold_302 ensembl protein_coding_gene 8256 8798 . + . ID=Phyra85754;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_302000003;logic_name=jgi_phyra1 scaffold_302 ensembl transcript 8256 8798 . + . ID=Phyra85754;Parent=Phyra85754;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_302 . CDS 8256 8798 . + 0 ID=Phyra85754;Parent=Phyra85754;rank=1 scaffold_302 . exon 8256 8798 . + . ID=Phyra85754.1;Parent=Phyra85754;constitutive=1;rank=1 scaffold_302 . repeat_region 16369 16416 . ? . description=trf scaffold_302 . repeat_region 17195 17391 . + . description=GypsyPi-1c_LTR ##gff-version 3 ##sequence-region scaffold_299 1 19884 scaffold_299 . repeat_region 384 393 . ? . description=dust scaffold_299 . repeat_region 3811 3821 . ? . description=dust scaffold_299 . repeat_region 4029 4071 . ? . description=trf scaffold_299 . repeat_region 4921 4928 . ? . description=dust scaffold_299 . repeat_region 5436 5453 . ? . description=dust scaffold_299 . repeat_region 7254 7261 . ? . description=dust scaffold_299 . repeat_region 7812 7819 . ? . description=dust scaffold_299 . repeat_region 8078 8085 . ? . description=dust scaffold_299 . repeat_region 8980 9029 . ? . description=dust scaffold_299 ensembl tRNA_gene 13327 13403 . - . ID=EPrPRAG00000000123;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_299 ensembl transcript 13327 13403 . - . ID=EPrPRAT00000000123;Parent=EPrPRAG00000000123;biotype=tRNA;logic_name=ncrna_eg scaffold_299 . exon 13327 13403 . - . ID=EPrPRAE00000000123;Parent=EPrPRAT00000000123;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_296 1 20156 scaffold_296 . biological_region 1140 1140 0.999 + . logic_name=eponine scaffold_296 . biological_region 2063 2067 0.999 - . logic_name=eponine scaffold_296 . biological_region 3283 3284 0.999 + . logic_name=eponine scaffold_296 . repeat_region 4104 5063 . ? . description=dust scaffold_296 . biological_region 5310 5315 0.999 + . logic_name=eponine scaffold_296 . biological_region 5710 5710 0.999 + . logic_name=eponine scaffold_296 . biological_region 5899 5905 0.999 - . logic_name=eponine scaffold_296 . biological_region 5956 5960 0.999 + . logic_name=eponine scaffold_296 ensembl protein_coding_gene 147 3062 . + . ID=Phyra85739;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_296000001;logic_name=jgi_phyra1 scaffold_296 ensembl transcript 147 3062 . + . ID=Phyra85739;Parent=Phyra85739;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_296 . CDS 147 3062 . + 0 ID=Phyra85739;Parent=Phyra85739;rank=1 scaffold_296 . exon 147 3062 . + . ID=Phyra85739.1;Parent=Phyra85739;constitutive=1;rank=1 scaffold_296 . repeat_region 7228 7353 . ? . description=trf scaffold_296 . repeat_region 7272 7320 . ? . description=trf scaffold_296 . repeat_region 7272 7621 . ? . description=trf scaffold_296 . repeat_region 7296 7450 . ? . description=trf scaffold_296 . repeat_region 7329 7621 . ? . description=trf scaffold_296 . repeat_region 7364 7588 . ? . description=trf scaffold_296 . repeat_region 7395 7623 . ? . description=trf scaffold_296 . repeat_region 7428 7498 . ? . description=trf scaffold_296 . repeat_region 7454 7662 . ? . description=trf scaffold_296 . repeat_region 7476 7566 . ? . description=trf scaffold_296 . repeat_region 7544 7590 . ? . description=trf scaffold_296 . repeat_region 7568 7638 . ? . description=trf scaffold_296 ensembl protein_coding_gene 11798 14647 . + . ID=Phyra85740;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_296000002;logic_name=jgi_phyra1 scaffold_296 ensembl transcript 11798 14647 . + . ID=Phyra85740;Parent=Phyra85740;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_296 . CDS 11798 14647 . + 0 ID=Phyra85740;Parent=Phyra85740;rank=1 scaffold_296 . exon 11798 14647 . + . ID=Phyra85740.1;Parent=Phyra85740;constitutive=1;rank=1 scaffold_296 . repeat_region 15680 15729 . ? . description=dust scaffold_296 . repeat_region 16674 18978 . ? . description=dust scaffold_296 ensembl protein_coding_gene 14949 16241 . - . ID=Phyra85741;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_296000003;logic_name=jgi_phyra1 scaffold_296 ensembl transcript 14949 16241 . - . ID=Phyra85741;Parent=Phyra85741;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_296 . CDS 14949 15140 . - 0 ID=Phyra85741;Parent=Phyra85741;rank=3 scaffold_296 . exon 14949 15140 . - . ID=Phyra85741.3;Parent=Phyra85741;constitutive=1;rank=3 scaffold_296 . CDS 15236 15495 . - 0 ID=Phyra85741;Parent=Phyra85741;rank=2 scaffold_296 . exon 15236 15495 . - . ID=Phyra85741.2;Parent=Phyra85741;constitutive=1;ensembl_phase=1;rank=2 scaffold_296 . CDS 15755 16241 . - 0 ID=Phyra85741;Parent=Phyra85741;rank=1 scaffold_296 . exon 15755 16241 . - . ID=Phyra85741.1;Parent=Phyra85741;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_298 1 20214 scaffold_298 . repeat_region 2001 2012 . ? . description=dust scaffold_298 . repeat_region 5288 5300 . ? . description=dust scaffold_298 ensembl protein_coding_gene 3807 4511 . - . ID=Phyra46659;biotype=protein_coding;external_name=gwEuk.298.3.1;logic_name=jgi_phyra1 scaffold_298 ensembl transcript 3807 4511 . - . ID=Phyra46659;Parent=Phyra46659;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_298 . CDS 3807 4511 . - 0 ID=Phyra46659;Parent=Phyra46659;rank=1 scaffold_298 . exon 3807 4511 . - . ID=Phyra46659.1;Parent=Phyra46659;constitutive=1;rank=1 scaffold_298 . biological_region 13187 13191 0.999 - . logic_name=eponine scaffold_298 ensembl protein_coding_gene 9632 9784 . + . ID=Phyra46662;biotype=protein_coding;external_name=gwEuk.298.6.1;logic_name=jgi_phyra1 scaffold_298 ensembl transcript 9632 9784 . + . ID=Phyra46662;Parent=Phyra46662;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_298 . CDS 9632 9784 . + 0 ID=Phyra46662;Parent=Phyra46662;rank=1 scaffold_298 . exon 9632 9784 . + . ID=Phyra46662.1;Parent=Phyra46662;constitutive=1;rank=1 scaffold_298 . repeat_region 13243 15524 . ? . description=dust scaffold_298 . repeat_region 15808 15851 . ? . description=trf scaffold_298 . repeat_region 16826 16951 . ? . description=dust scaffold_298 . repeat_region 19119 19168 . ? . description=dust scaffold_298 ensembl protein_coding_gene 16588 20211 . + . ID=Phyra85746;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_298000002;logic_name=jgi_phyra1 scaffold_298 ensembl transcript 16588 20211 . + . ID=Phyra85746;Parent=Phyra85746;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_298 . CDS 16588 16823 . + 0 ID=Phyra85746;Parent=Phyra85746;rank=1 scaffold_298 . exon 16588 16823 . + . ID=Phyra85746.1;Parent=Phyra85746;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_298 . CDS 16970 18980 . + 0 ID=Phyra85746;Parent=Phyra85746;rank=2 scaffold_298 . exon 16970 18980 . + . ID=Phyra85746.2;Parent=Phyra85746;constitutive=1;ensembl_phase=2;rank=2 scaffold_298 . CDS 19207 20211 . + 0 ID=Phyra85746;Parent=Phyra85746;rank=3 scaffold_298 . exon 19207 20211 . + . ID=Phyra85746.3;Parent=Phyra85746;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_297 1 20294 scaffold_297 . repeat_region 6266 6280 . ? . description=dust scaffold_297 ensembl protein_coding_gene 116 905 . - . ID=Phyra85742;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_297000001;logic_name=jgi_phyra1 scaffold_297 ensembl transcript 116 905 . - . ID=Phyra85742;Parent=Phyra85742;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_297 . CDS 116 291 . - 0 ID=Phyra85742;Parent=Phyra85742;rank=3 scaffold_297 . exon 116 291 . - . ID=Phyra85742.3;Parent=Phyra85742;constitutive=1;ensembl_phase=1;rank=3 scaffold_297 . CDS 511 747 . - 0 ID=Phyra85742;Parent=Phyra85742;rank=2 scaffold_297 . exon 511 747 . - . ID=Phyra85742.2;Parent=Phyra85742;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_297 . CDS 821 905 . - 0 ID=Phyra85742;Parent=Phyra85742;rank=1 scaffold_297 . exon 821 905 . - . ID=Phyra85742.1;Parent=Phyra85742;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_297 ensembl protein_coding_gene 13090 16161 . + . ID=Phyra85743;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_297000002;logic_name=jgi_phyra1 scaffold_297 ensembl transcript 13090 16161 . + . ID=Phyra85743;Parent=Phyra85743;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_297 . CDS 13090 13094 . + 0 ID=Phyra85743;Parent=Phyra85743;rank=1 scaffold_297 . exon 13090 13094 . + . ID=Phyra85743.1;Parent=Phyra85743;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_297 . CDS 13310 13831 . + 0 ID=Phyra85743;Parent=Phyra85743;rank=2 scaffold_297 . exon 13310 13831 . + . ID=Phyra85743.2;Parent=Phyra85743;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_297 . CDS 13875 14144 . + 0 ID=Phyra85743;Parent=Phyra85743;rank=3 scaffold_297 . CDS 14183 14602 . + 0 ID=Phyra85743;Parent=Phyra85743;rank=4 scaffold_297 . CDS 14762 14890 . + 0 ID=Phyra85743;Parent=Phyra85743;rank=5 scaffold_297 . CDS 14982 15500 . + 0 ID=Phyra85743;Parent=Phyra85743;rank=6 scaffold_297 . CDS 15532 15793 . + 0 ID=Phyra85743;Parent=Phyra85743;rank=7 scaffold_297 . CDS 15823 16161 . + 0 ID=Phyra85743;Parent=Phyra85743;rank=8 scaffold_297 . biological_region 14281 14282 0.999 - . logic_name=eponine scaffold_297 . biological_region 14598 14602 0.999 - . logic_name=eponine scaffold_297 . biological_region 16087 16092 0.999 + . logic_name=eponine scaffold_297 . biological_region 16112 16117 0.999 - . logic_name=eponine scaffold_297 . repeat_region 17317 17329 . ? . description=dust scaffold_297 . repeat_region 18087 18094 . ? . description=dust scaffold_297 . repeat_region 18912 18926 . ? . description=dust scaffold_297 . repeat_region 18926 18964 . ? . description=trf scaffold_297 . repeat_region 19390 19431 . ? . description=trf scaffold_297 ensembl protein_coding_gene 19516 20280 . - . ID=Phyra72367;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_297000001;logic_name=jgi_phyra1 scaffold_297 ensembl transcript 19516 20280 . - . ID=Phyra72367;Parent=Phyra72367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_297 . CDS 19516 20280 . - 0 ID=Phyra72367;Parent=Phyra72367;rank=1 scaffold_297 . exon 19516 20280 . - . ID=Phyra72367.1;Parent=Phyra72367;constitutive=1;rank=1 scaffold_297 . exon 13875 14144 . + . ID=Phyra85743.3;Parent=Phyra85743;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_297 . exon 14183 14602 . + . ID=Phyra85743.4;Parent=Phyra85743;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_297 . exon 14762 14890 . + . ID=Phyra85743.5;Parent=Phyra85743;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_297 . exon 14982 15500 . + . ID=Phyra85743.6;Parent=Phyra85743;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_297 . exon 15532 15793 . + . ID=Phyra85743.7;Parent=Phyra85743;constitutive=1;ensembl_phase=2;rank=7 scaffold_297 . exon 15823 16161 . + . ID=Phyra85743.8;Parent=Phyra85743;constitutive=1;rank=8 ##gff-version 3 ##sequence-region scaffold_295 1 20586 scaffold_295 . repeat_region 1054 3554 . ? . description=dust scaffold_295 . repeat_region 5201 6676 . ? . description=dust scaffold_295 ensembl protein_coding_gene 6755 7832 . - . ID=Phyra85737;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_295000001;logic_name=jgi_phyra1 scaffold_295 ensembl transcript 6755 7832 . - . ID=Phyra85737;Parent=Phyra85737;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_295 . CDS 6755 6824 . - 0 ID=Phyra85737;Parent=Phyra85737;rank=2 scaffold_295 . exon 6755 6824 . - . ID=Phyra85737.2;Parent=Phyra85737;constitutive=1;ensembl_phase=2;rank=2 scaffold_295 . CDS 6859 7832 . - 0 ID=Phyra85737;Parent=Phyra85737;rank=1 scaffold_295 . exon 6859 7832 . - . ID=Phyra85737.1;Parent=Phyra85737;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_295 . biological_region 7411 7414 0.999 + . logic_name=eponine scaffold_295 . biological_region 7449 7449 0.999 - . logic_name=eponine scaffold_295 ensembl protein_coding_gene 11775 13127 . + . ID=Phyra85738;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_295000002;logic_name=jgi_phyra1 scaffold_295 ensembl transcript 11775 13127 . + . ID=Phyra85738;Parent=Phyra85738;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_295 . CDS 11775 13127 . + 0 ID=Phyra85738;Parent=Phyra85738;rank=1 scaffold_295 . exon 11775 13127 . + . ID=Phyra85738.1;Parent=Phyra85738;constitutive=1;rank=1 scaffold_295 . repeat_region 13797 14570 . ? . description=dust scaffold_295 . repeat_region 15669 18735 . ? . description=dust scaffold_295 . repeat_region 19449 19498 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_294 1 20812 scaffold_294 . repeat_region 59 95 . ? . description=trf scaffold_294 . repeat_region 83 131 . ? . description=trf scaffold_294 . repeat_region 720 769 . ? . description=dust scaffold_294 . repeat_region 1419 1447 . ? . description=trf scaffold_294 . repeat_region 2345 2393 . ? . description=trf scaffold_294 . repeat_region 2381 2417 . ? . description=trf scaffold_294 . biological_region 4461 4462 0.999 + . logic_name=eponine scaffold_294 . repeat_region 5107 5156 . ? . description=dust scaffold_294 . repeat_region 5938 6174 . ? . description=dust scaffold_294 ensembl protein_coding_gene 495 1178 . - . ID=Phyra85727;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_294000001;logic_name=jgi_phyra1 scaffold_294 ensembl transcript 495 1178 . - . ID=Phyra85727;Parent=Phyra85727;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_294 . CDS 495 507 . - 0 ID=Phyra85727;Parent=Phyra85727;rank=2 scaffold_294 . exon 495 507 . - . ID=Phyra85727.2;Parent=Phyra85727;constitutive=1;ensembl_phase=2;rank=2 scaffold_294 . CDS 823 1178 . - 0 ID=Phyra85727;Parent=Phyra85727;rank=1 scaffold_294 . exon 823 1178 . - . ID=Phyra85727.1;Parent=Phyra85727;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_294 ensembl protein_coding_gene 1515 3131 . - . ID=Phyra85728;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_294000002;logic_name=jgi_phyra1 scaffold_294 ensembl transcript 1515 3131 . - . ID=Phyra85728;Parent=Phyra85728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_294 . CDS 1515 2218 . - 0 ID=Phyra85728;Parent=Phyra85728;rank=2 scaffold_294 . exon 1515 2218 . - . ID=Phyra85728.2;Parent=Phyra85728;constitutive=1;ensembl_phase=1;rank=2 scaffold_294 . CDS 2528 3131 . - 0 ID=Phyra85728;Parent=Phyra85728;rank=1 scaffold_294 . exon 2528 3131 . - . ID=Phyra85728.1;Parent=Phyra85728;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_294 ensembl protein_coding_gene 3655 5096 . - . ID=Phyra85729;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_294000003;logic_name=jgi_phyra1 scaffold_294 ensembl transcript 3655 5096 . - . ID=Phyra85729;Parent=Phyra85729;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_294 . CDS 3655 4312 . - 0 ID=Phyra85729;Parent=Phyra85729;rank=3 scaffold_294 . exon 3655 4312 . - . ID=Phyra85729.3;Parent=Phyra85729;constitutive=1;ensembl_phase=2;rank=3 scaffold_294 . CDS 4509 4936 . - 0 ID=Phyra85729;Parent=Phyra85729;rank=2 scaffold_294 . exon 4509 4936 . - . ID=Phyra85729.2;Parent=Phyra85729;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_294 . CDS 5043 5096 . - 0 ID=Phyra85729;Parent=Phyra85729;rank=1 scaffold_294 . exon 5043 5096 . - . ID=Phyra85729.1;Parent=Phyra85729;constitutive=1;rank=1 scaffold_294 ensembl protein_coding_gene 5380 6729 . - . ID=Phyra85730;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_294000004;logic_name=jgi_phyra1 scaffold_294 ensembl transcript 5380 6729 . - . ID=Phyra85730;Parent=Phyra85730;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_294 . CDS 5380 5886 . - 0 ID=Phyra85730;Parent=Phyra85730;rank=2 scaffold_294 . exon 5380 5886 . - . ID=Phyra85730.2;Parent=Phyra85730;constitutive=1;rank=2 scaffold_294 . CDS 6262 6729 . - 0 ID=Phyra85730;Parent=Phyra85730;rank=1 scaffold_294 . exon 6262 6729 . - . ID=Phyra85730.1;Parent=Phyra85730;constitutive=1;rank=1 scaffold_294 ensembl protein_coding_gene 9800 10641 . - . ID=Phyra72366;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_294000001;logic_name=jgi_phyra1 scaffold_294 ensembl transcript 9800 10641 . - . ID=Phyra72366;Parent=Phyra72366;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_294 . CDS 9800 10076 . - 0 ID=Phyra72366;Parent=Phyra72366;rank=4 scaffold_294 . exon 9800 10076 . - . ID=Phyra72366.4;Parent=Phyra72366;constitutive=1;ensembl_phase=2;rank=4 scaffold_294 . CDS 10144 10356 . - 0 ID=Phyra72366;Parent=Phyra72366;rank=3 scaffold_294 . exon 10144 10356 . - . ID=Phyra72366.3;Parent=Phyra72366;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_294 . CDS 10444 10534 . - 0 ID=Phyra72366;Parent=Phyra72366;rank=2 scaffold_294 . exon 10444 10534 . - . ID=Phyra72366.2;Parent=Phyra72366;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_294 . CDS 10623 10641 . - 0 ID=Phyra72366;Parent=Phyra72366;rank=1 scaffold_294 . exon 10623 10641 . - . ID=Phyra72366.1;Parent=Phyra72366;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_294 ensembl protein_coding_gene 7276 9098 . + . ID=Phyra85731;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_294000005;logic_name=jgi_phyra1 scaffold_294 ensembl transcript 7276 9098 . + . ID=Phyra85731;Parent=Phyra85731;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_294 . CDS 7276 7403 . + 0 ID=Phyra85731;Parent=Phyra85731;rank=1 scaffold_294 . exon 7276 7403 . + . ID=Phyra85731.1;Parent=Phyra85731;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_294 . CDS 7480 8945 . + 0 ID=Phyra85731;Parent=Phyra85731;rank=2 scaffold_294 . exon 7480 8945 . + . ID=Phyra85731.2;Parent=Phyra85731;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_294 . CDS 9019 9098 . + 0 ID=Phyra85731;Parent=Phyra85731;rank=3 scaffold_294 . exon 9019 9098 . + . ID=Phyra85731.3;Parent=Phyra85731;constitutive=1;ensembl_phase=1;rank=3 scaffold_294 ensembl protein_coding_gene 10844 14603 . + . ID=Phyra85733;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_294000007;logic_name=jgi_phyra1 scaffold_294 ensembl transcript 10844 14603 . + . ID=Phyra85733;Parent=Phyra85733;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_294 . CDS 10844 10980 . + 0 ID=Phyra85733;Parent=Phyra85733;rank=1 scaffold_294 . exon 10844 10980 . + . ID=Phyra85733.1;Parent=Phyra85733;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_294 . CDS 11052 11460 . + 0 ID=Phyra85733;Parent=Phyra85733;rank=2 scaffold_294 . exon 11052 11460 . + . ID=Phyra85733.2;Parent=Phyra85733;constitutive=1;ensembl_phase=2;rank=2 scaffold_294 . CDS 11715 12521 . + 0 ID=Phyra85733;Parent=Phyra85733;rank=3 scaffold_294 . exon 11715 12521 . + . ID=Phyra85733.3;Parent=Phyra85733;constitutive=1;rank=3 scaffold_294 . CDS 12696 14603 . + 0 ID=Phyra85733;Parent=Phyra85733;rank=4 scaffold_294 . exon 12696 14603 . + . ID=Phyra85733.4;Parent=Phyra85733;constitutive=1;rank=4 scaffold_294 . biological_region 15413 15415 0.999 - . logic_name=eponine scaffold_294 . biological_region 17102 17104 0.999 - . logic_name=eponine scaffold_294 . biological_region 17382 17383 0.999 - . logic_name=eponine scaffold_294 ensembl protein_coding_gene 15169 16915 . - . ID=Phyra85734;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_294000008;logic_name=jgi_phyra1 scaffold_294 ensembl transcript 15169 16915 . - . ID=Phyra85734;Parent=Phyra85734;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_294 . CDS 15169 15205 . - 0 ID=Phyra85734;Parent=Phyra85734;rank=2 scaffold_294 . exon 15169 15205 . - . ID=Phyra85734.2;Parent=Phyra85734;constitutive=1;ensembl_phase=2;rank=2 scaffold_294 . CDS 15282 16915 . - 0 ID=Phyra85734;Parent=Phyra85734;rank=1 scaffold_294 . exon 15282 16915 . - . ID=Phyra85734.1;Parent=Phyra85734;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_294 ensembl protein_coding_gene 17146 18300 . - . ID=Phyra85735;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_294000009;logic_name=jgi_phyra1 scaffold_294 ensembl transcript 17146 18300 . - . ID=Phyra85735;Parent=Phyra85735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_294 . CDS 17146 18065 . - 0 ID=Phyra85735;Parent=Phyra85735;rank=2 scaffold_294 . exon 17146 18065 . - . ID=Phyra85735.2;Parent=Phyra85735;constitutive=1;ensembl_phase=1;rank=2 scaffold_294 . CDS 18132 18300 . - 0 ID=Phyra85735;Parent=Phyra85735;rank=1 scaffold_294 . exon 18132 18300 . - . ID=Phyra85735.1;Parent=Phyra85735;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_294 ensembl protein_coding_gene 18793 19335 . + . ID=Phyra85736;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_294000010;logic_name=jgi_phyra1 scaffold_294 ensembl transcript 18793 19335 . + . ID=Phyra85736;Parent=Phyra85736;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_294 . CDS 18793 19335 . + 0 ID=Phyra85736;Parent=Phyra85736;rank=1 scaffold_294 . exon 18793 19335 . + . ID=Phyra85736.1;Parent=Phyra85736;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_293 1 20925 scaffold_293 . repeat_region 983 1032 . ? . description=dust scaffold_293 . repeat_region 2093 2142 . ? . description=dust scaffold_293 . repeat_region 2533 2541 . ? . description=dust scaffold_293 . repeat_region 3319 3655 . ? . description=dust scaffold_293 . repeat_region 4902 4951 . ? . description=dust scaffold_293 ensembl protein_coding_gene 3133 4019 . - . ID=Phyra85721;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_293000001;logic_name=jgi_phyra1 scaffold_293 ensembl transcript 3133 4019 . - . ID=Phyra85721;Parent=Phyra85721;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_293 . CDS 3133 3280 . - 0 ID=Phyra85721;Parent=Phyra85721;rank=2 scaffold_293 . exon 3133 3280 . - . ID=Phyra85721.2;Parent=Phyra85721;constitutive=1;ensembl_phase=2;rank=2 scaffold_293 . CDS 3667 4019 . - 0 ID=Phyra85721;Parent=Phyra85721;rank=1 scaffold_293 . exon 3667 4019 . - . ID=Phyra85721.1;Parent=Phyra85721;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_293 ensembl protein_coding_gene 10197 10523 . - . ID=Phyra85722;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_293000002;logic_name=jgi_phyra1 scaffold_293 ensembl transcript 10197 10523 . - . ID=Phyra85722;Parent=Phyra85722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_293 . CDS 10197 10523 . - 0 ID=Phyra85722;Parent=Phyra85722;rank=1 scaffold_293 . exon 10197 10523 . - . ID=Phyra85722.1;Parent=Phyra85722;constitutive=1;rank=1 scaffold_293 ensembl protein_coding_gene 13676 14272 . - . ID=Phyra85723;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_293000003;logic_name=jgi_phyra1 scaffold_293 ensembl transcript 13676 14272 . - . ID=Phyra85723;Parent=Phyra85723;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_293 . CDS 13676 14272 . - 0 ID=Phyra85723;Parent=Phyra85723;rank=1 scaffold_293 . exon 13676 14272 . - . ID=Phyra85723.1;Parent=Phyra85723;constitutive=1;rank=1 scaffold_293 ensembl protein_coding_gene 15718 16698 . + . ID=Phyra72365;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_293000001;logic_name=jgi_phyra1 scaffold_293 ensembl transcript 15718 16698 . + . ID=Phyra72365;Parent=Phyra72365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_293 . CDS 15718 16374 . + 0 ID=Phyra72365;Parent=Phyra72365;rank=1 scaffold_293 . exon 15718 16374 . + . ID=Phyra72365.1;Parent=Phyra72365;constitutive=1;rank=1 scaffold_293 . CDS 16489 16551 . + 0 ID=Phyra72365;Parent=Phyra72365;rank=2 scaffold_293 . exon 16489 16551 . + . ID=Phyra72365.2;Parent=Phyra72365;constitutive=1;rank=2 scaffold_293 . CDS 16597 16698 . + 0 ID=Phyra72365;Parent=Phyra72365;rank=3 scaffold_293 . exon 16597 16698 . + . ID=Phyra72365.3;Parent=Phyra72365;constitutive=1;rank=3 scaffold_293 ensembl protein_coding_gene 14428 14835 . + . ID=Phyra85724;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_293000004;logic_name=jgi_phyra1 scaffold_293 ensembl transcript 14428 14835 . + . ID=Phyra85724;Parent=Phyra85724;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_293 . CDS 14428 14835 . + 0 ID=Phyra85724;Parent=Phyra85724;rank=1 scaffold_293 . exon 14428 14835 . + . ID=Phyra85724.1;Parent=Phyra85724;constitutive=1;rank=1 scaffold_293 ensembl protein_coding_gene 16869 20840 . - . ID=Phyra85726;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_293000006;logic_name=jgi_phyra1 scaffold_293 ensembl transcript 16869 20840 . - . ID=Phyra85726;Parent=Phyra85726;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_293 . CDS 16869 20840 . - 0 ID=Phyra85726;Parent=Phyra85726;rank=1 scaffold_293 . exon 16869 20840 . - . ID=Phyra85726.1;Parent=Phyra85726;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_292 1 20992 scaffold_292 . repeat_region 125 250 . ? . description=trf scaffold_292 . repeat_region 161 256 . ? . description=dust scaffold_292 . repeat_region 1990 2027 . ? . description=trf scaffold_292 . repeat_region 2273 2952 . ? . description=dust scaffold_292 . repeat_region 3516 3527 . ? . description=dust scaffold_292 . repeat_region 4890 6943 . ? . description=dust scaffold_292 ensembl protein_coding_gene 13176 13729 . + . ID=Phyra72364;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_292000001;logic_name=jgi_phyra1 scaffold_292 ensembl transcript 13176 13729 . + . ID=Phyra72364;Parent=Phyra72364;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_292 . CDS 13176 13196 . + 0 ID=Phyra72364;Parent=Phyra72364;rank=1 scaffold_292 . exon 13176 13196 . + . ID=Phyra72364.1;Parent=Phyra72364;constitutive=1;rank=1 scaffold_292 . CDS 13268 13729 . + 0 ID=Phyra72364;Parent=Phyra72364;rank=2 scaffold_292 . exon 13268 13729 . + . ID=Phyra72364.2;Parent=Phyra72364;constitutive=1;rank=2 scaffold_292 ensembl protein_coding_gene 7386 9011 . + . ID=Phyra85718;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_292000001;logic_name=jgi_phyra1 scaffold_292 ensembl transcript 7386 9011 . + . ID=Phyra85718;Parent=Phyra85718;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_292 . CDS 7386 9011 . + 0 ID=Phyra85718;Parent=Phyra85718;rank=1 scaffold_292 . exon 7386 9011 . + . ID=Phyra85718.1;Parent=Phyra85718;constitutive=1;rank=1 scaffold_292 . repeat_region 16865 16888 . ? . description=trf scaffold_292 . repeat_region 16942 16999 . ? . description=trf scaffold_292 . repeat_region 16971 17080 . ? . description=trf scaffold_292 . repeat_region 17424 18914 . ? . description=dust scaffold_292 ensembl protein_coding_gene 16900 19556 . + . ID=Phyra85720;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_292000003;logic_name=jgi_phyra1 scaffold_292 ensembl transcript 16900 19556 . + . ID=Phyra85720;Parent=Phyra85720;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_292 . CDS 16900 17415 . + 0 ID=Phyra85720;Parent=Phyra85720;rank=1 scaffold_292 . exon 16900 17415 . + . ID=Phyra85720.1;Parent=Phyra85720;constitutive=1;rank=1 scaffold_292 . CDS 18918 19556 . + 0 ID=Phyra85720;Parent=Phyra85720;rank=2 scaffold_292 . exon 18918 19556 . + . ID=Phyra85720.2;Parent=Phyra85720;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_177 1 21053 scaffold_177 . biological_region 1061 1064 0.999 + . logic_name=eponine scaffold_177 . repeat_region 1472 2747 . ? . description=dust scaffold_177 . biological_region 2872 2876 0.999 + . logic_name=eponine scaffold_177 . biological_region 2923 2928 0.999 + . logic_name=eponine scaffold_177 . biological_region 2952 2952 0.999 - . logic_name=eponine scaffold_177 . biological_region 2989 2991 0.999 - . logic_name=eponine scaffold_177 . biological_region 3026 3030 0.999 + . logic_name=eponine scaffold_177 . biological_region 3080 3082 0.999 + . logic_name=eponine scaffold_177 . repeat_region 3549 4904 . + . description=GypsyPi-1c_I-int scaffold_177 . repeat_region 5206 7957 . ? . description=dust scaffold_177 ensembl protein_coding_gene 3276 4621 . + . ID=Phyra85397;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_177000001;logic_name=jgi_phyra1 scaffold_177 ensembl transcript 3276 4621 . + . ID=Phyra85397;Parent=Phyra85397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_177 . CDS 3276 3504 . + 0 ID=Phyra85397;Parent=Phyra85397;rank=1 scaffold_177 . exon 3276 3504 . + . ID=Phyra85397.1;Parent=Phyra85397;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_177 . CDS 3551 3780 . + 0 ID=Phyra85397;Parent=Phyra85397;rank=2 scaffold_177 . exon 3551 3780 . + . ID=Phyra85397.2;Parent=Phyra85397;constitutive=1;ensembl_phase=1;rank=2 scaffold_177 . CDS 3893 4621 . + 0 ID=Phyra85397;Parent=Phyra85397;rank=3 scaffold_177 . exon 3893 4621 . + . ID=Phyra85397.3;Parent=Phyra85397;constitutive=1;rank=3 scaffold_177 . repeat_region 10715 10741 . ? . description=trf scaffold_177 ensembl protein_coding_gene 8079 9681 . - . ID=Phyra85398;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_177000002;logic_name=jgi_phyra1 scaffold_177 ensembl transcript 8079 9681 . - . ID=Phyra85398;Parent=Phyra85398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_177 . CDS 8079 8276 . - 0 ID=Phyra85398;Parent=Phyra85398;rank=5 scaffold_177 . exon 8079 8276 . - . ID=Phyra85398.5;Parent=Phyra85398;constitutive=1;rank=5 scaffold_177 . CDS 8344 8471 . - 0 ID=Phyra85398;Parent=Phyra85398;rank=4 scaffold_177 . exon 8344 8471 . - . ID=Phyra85398.4;Parent=Phyra85398;constitutive=1;ensembl_phase=1;rank=4 scaffold_177 . CDS 8508 8705 . - 0 ID=Phyra85398;Parent=Phyra85398;rank=3 scaffold_177 . exon 8508 8705 . - . ID=Phyra85398.3;Parent=Phyra85398;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_177 . CDS 8730 9408 . - 0 ID=Phyra85398;Parent=Phyra85398;rank=2 scaffold_177 . exon 8730 9408 . - . ID=Phyra85398.2;Parent=Phyra85398;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_177 . CDS 9436 9681 . - 0 ID=Phyra85398;Parent=Phyra85398;rank=1 scaffold_177 . exon 9436 9681 . - . ID=Phyra85398.1;Parent=Phyra85398;constitutive=1;rank=1 scaffold_177 . repeat_region 13684 18118 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_291 1 21199 scaffold_291 . biological_region 2414 2415 0.999 + . logic_name=eponine scaffold_291 . biological_region 3183 3189 0.999 + . logic_name=eponine scaffold_291 . biological_region 3310 3316 0.999 - . logic_name=eponine scaffold_291 . biological_region 3320 3325 0.999 - . logic_name=eponine scaffold_291 . biological_region 3505 3508 0.999 - . logic_name=eponine scaffold_291 . biological_region 3525 3529 0.999 - . logic_name=eponine scaffold_291 . biological_region 3579 3585 0.999 + . logic_name=eponine scaffold_291 . biological_region 3923 3928 0.999 + . logic_name=eponine scaffold_291 . repeat_region 4458 4646 . ? . description=trf scaffold_291 . repeat_region 7029 9461 . ? . description=dust scaffold_291 ensembl protein_coding_gene 127 4929 . + . ID=Phyra85714;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_291000001;logic_name=jgi_phyra1 scaffold_291 ensembl transcript 127 4929 . + . ID=Phyra85714;Parent=Phyra85714;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_291 . CDS 127 548 . + 0 ID=Phyra85714;Parent=Phyra85714;rank=1 scaffold_291 . exon 127 548 . + . ID=Phyra85714.1;Parent=Phyra85714;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_291 . CDS 846 2651 . + 0 ID=Phyra85714;Parent=Phyra85714;rank=2 scaffold_291 . exon 846 2651 . + . ID=Phyra85714.2;Parent=Phyra85714;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_291 . CDS 3039 4929 . + 0 ID=Phyra85714;Parent=Phyra85714;rank=3 scaffold_291 . exon 3039 4929 . + . ID=Phyra85714.3;Parent=Phyra85714;constitutive=1;ensembl_phase=2;rank=3 scaffold_291 ensembl protein_coding_gene 5135 6149 . + . ID=Phyra85715;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_291000002;logic_name=jgi_phyra1 scaffold_291 ensembl transcript 5135 6149 . + . ID=Phyra85715;Parent=Phyra85715;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_291 . CDS 5135 6010 . + 0 ID=Phyra85715;Parent=Phyra85715;rank=1 scaffold_291 . exon 5135 6010 . + . ID=Phyra85715.1;Parent=Phyra85715;constitutive=1;rank=1 scaffold_291 . CDS 6078 6149 . + 0 ID=Phyra85715;Parent=Phyra85715;rank=2 scaffold_291 . exon 6078 6149 . + . ID=Phyra85715.2;Parent=Phyra85715;constitutive=1;rank=2 scaffold_291 ensembl protein_coding_gene 11745 12766 . + . ID=Phyra85716;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_291000003;logic_name=jgi_phyra1 scaffold_291 ensembl transcript 11745 12766 . + . ID=Phyra85716;Parent=Phyra85716;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_291 . CDS 11745 11750 . + 0 ID=Phyra85716;Parent=Phyra85716;rank=1 scaffold_291 . exon 11745 11750 . + . ID=Phyra85716.1;Parent=Phyra85716;constitutive=1;rank=1 scaffold_291 . CDS 11832 12011 . + 0 ID=Phyra85716;Parent=Phyra85716;rank=2 scaffold_291 . exon 11832 12011 . + . ID=Phyra85716.2;Parent=Phyra85716;constitutive=1;rank=2 scaffold_291 . CDS 12422 12766 . + 0 ID=Phyra85716;Parent=Phyra85716;rank=3 scaffold_291 . exon 12422 12766 . + . ID=Phyra85716.3;Parent=Phyra85716;constitutive=1;rank=3 scaffold_291 ensembl protein_coding_gene 12908 13774 . - . ID=Phyra85717;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_291000004;logic_name=jgi_phyra1 scaffold_291 ensembl transcript 12908 13774 . - . ID=Phyra85717;Parent=Phyra85717;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_291 . CDS 12908 13774 . - 0 ID=Phyra85717;Parent=Phyra85717;rank=1 scaffold_291 . exon 12908 13774 . - . ID=Phyra85717.1;Parent=Phyra85717;constitutive=1;rank=1 scaffold_291 . repeat_region 13982 18900 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_290 1 21303 scaffold_290 . repeat_region 1935 1974 . ? . description=trf scaffold_290 . repeat_region 2052 2064 . ? . description=dust scaffold_290 . biological_region 2969 2976 0.999 - . logic_name=eponine scaffold_290 . biological_region 3341 3344 0.999 + . logic_name=eponine scaffold_290 . biological_region 3348 3350 0.999 - . logic_name=eponine scaffold_290 . repeat_region 4133 4577 . - . description=GypsyPi-1c_I-int scaffold_290 . biological_region 4181 4183 0.999 + . logic_name=eponine scaffold_290 . repeat_region 4654 4703 . ? . description=dust scaffold_290 . repeat_region 5811 6985 . ? . description=dust scaffold_290 ensembl protein_coding_gene 12469 12825 . + . ID=Phyra46610;biotype=protein_coding;external_name=gwEuk.290.2.1;logic_name=jgi_phyra1 scaffold_290 ensembl transcript 12469 12825 . + . ID=Phyra46610;Parent=Phyra46610;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_290 . CDS 12469 12825 . + 0 ID=Phyra46610;Parent=Phyra46610;rank=1 scaffold_290 . exon 12469 12825 . + . ID=Phyra46610.1;Parent=Phyra46610;constitutive=1;rank=1 scaffold_290 ensembl protein_coding_gene 13291 13647 . + . ID=Phyra46611;biotype=protein_coding;external_name=gwEuk.290.3.1;logic_name=jgi_phyra1 scaffold_290 ensembl transcript 13291 13647 . + . ID=Phyra46611;Parent=Phyra46611;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_290 . CDS 13291 13647 . + 0 ID=Phyra46611;Parent=Phyra46611;rank=1 scaffold_290 . exon 13291 13647 . + . ID=Phyra46611.1;Parent=Phyra46611;constitutive=1;rank=1 scaffold_290 ensembl protein_coding_gene 8792 11172 . + . ID=Phyra85712;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_290000001;logic_name=jgi_phyra1 scaffold_290 ensembl transcript 8792 11172 . + . ID=Phyra85712;Parent=Phyra85712;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_290 . CDS 8792 8934 . + 0 ID=Phyra85712;Parent=Phyra85712;rank=1 scaffold_290 . exon 8792 8934 . + . ID=Phyra85712.1;Parent=Phyra85712;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_290 . CDS 8955 10360 . + 0 ID=Phyra85712;Parent=Phyra85712;rank=2 scaffold_290 . exon 8955 10360 . + . ID=Phyra85712.2;Parent=Phyra85712;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_290 . CDS 10528 11078 . + 0 ID=Phyra85712;Parent=Phyra85712;rank=3 scaffold_290 . exon 10528 11078 . + . ID=Phyra85712.3;Parent=Phyra85712;constitutive=1;ensembl_phase=1;rank=3 scaffold_290 . CDS 11110 11172 . + 0 ID=Phyra85712;Parent=Phyra85712;rank=4 scaffold_290 . exon 11110 11172 . + . ID=Phyra85712.4;Parent=Phyra85712;constitutive=1;rank=4 scaffold_290 . biological_region 16277 16281 0.999 - . logic_name=eponine scaffold_290 . repeat_region 16672 16693 . ? . description=trf scaffold_290 . repeat_region 16879 17154 . ? . description=dust scaffold_290 . repeat_region 17805 20234 . ? . description=dust scaffold_290 . repeat_region 20691 20818 . + . description=GypsyPi-1c_LTR scaffold_290 ensembl snRNA_gene 21146 21261 . + . ID=EPrPRAG00000000110;biotype=snRNA;description=U5 spliceosomal RNA [Source:RFAM%3BAcc:RF00020];external_name=U5;logic_name=ncrna_eg scaffold_290 ensembl snRNA 21146 21261 . + . ID=EPrPRAT00000000110;Parent=EPrPRAG00000000110;biotype=snRNA;logic_name=ncrna_eg scaffold_290 . exon 21146 21261 . + . ID=EPrPRAE00000000110;Parent=EPrPRAT00000000110;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_290 ensembl protein_coding_gene 14938 16396 . + . ID=Phyra85713;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_290000002;logic_name=jgi_phyra1 scaffold_290 ensembl transcript 14938 16396 . + . ID=Phyra85713;Parent=Phyra85713;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_290 . CDS 14938 15240 . + 0 ID=Phyra85713;Parent=Phyra85713;rank=1 scaffold_290 . exon 14938 15240 . + . ID=Phyra85713.1;Parent=Phyra85713;constitutive=1;rank=1 scaffold_290 . CDS 15388 15648 . + 0 ID=Phyra85713;Parent=Phyra85713;rank=2 scaffold_290 . exon 15388 15648 . + . ID=Phyra85713.2;Parent=Phyra85713;constitutive=1;rank=2 scaffold_290 . CDS 15869 16396 . + 0 ID=Phyra85713;Parent=Phyra85713;rank=3 scaffold_290 . exon 15869 16396 . + . ID=Phyra85713.3;Parent=Phyra85713;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_289 1 21440 scaffold_289 . repeat_region 3195 3206 . ? . description=dust scaffold_289 . repeat_region 3966 3989 . ? . description=trf scaffold_289 . repeat_region 3966 3989 . ? . description=dust scaffold_289 . biological_region 4973 4978 0.999 - . logic_name=eponine scaffold_289 . biological_region 5027 5035 0.999 + . logic_name=eponine scaffold_289 . biological_region 5223 5223 0.999 - . logic_name=eponine scaffold_289 . biological_region 5619 5622 0.999 - . logic_name=eponine scaffold_289 . biological_region 6336 6336 0.999 + . logic_name=eponine scaffold_289 . biological_region 6357 6363 0.999 + . logic_name=eponine scaffold_289 . biological_region 6372 6376 0.999 + . logic_name=eponine scaffold_289 . biological_region 6461 6465 0.999 - . logic_name=eponine scaffold_289 ensembl protein_coding_gene 863 2369 . - . ID=Phyra85709;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_289000001;logic_name=jgi_phyra1 scaffold_289 ensembl transcript 863 2369 . - . ID=Phyra85709;Parent=Phyra85709;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_289 . CDS 863 1887 . - 0 ID=Phyra85709;Parent=Phyra85709;rank=2 scaffold_289 . exon 863 1887 . - . ID=Phyra85709.2;Parent=Phyra85709;constitutive=1;ensembl_phase=1;rank=2 scaffold_289 . CDS 2054 2369 . - 0 ID=Phyra85709;Parent=Phyra85709;rank=1 scaffold_289 . exon 2054 2369 . - . ID=Phyra85709.1;Parent=Phyra85709;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_289 ensembl protein_coding_gene 4776 6911 . + . ID=Phyra85710;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_289000002;logic_name=jgi_phyra1 scaffold_289 ensembl transcript 4776 6911 . + . ID=Phyra85710;Parent=Phyra85710;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_289 . CDS 4776 5952 . + 0 ID=Phyra85710;Parent=Phyra85710;rank=1 scaffold_289 . exon 4776 5952 . + . ID=Phyra85710.1;Parent=Phyra85710;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_289 . CDS 6015 6363 . + 0 ID=Phyra85710;Parent=Phyra85710;rank=2 scaffold_289 . exon 6015 6363 . + . ID=Phyra85710.2;Parent=Phyra85710;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_289 . CDS 6482 6911 . + 0 ID=Phyra85710;Parent=Phyra85710;rank=3 scaffold_289 . exon 6482 6911 . + . ID=Phyra85710.3;Parent=Phyra85710;constitutive=1;ensembl_phase=2;rank=3 scaffold_289 ensembl protein_coding_gene 10896 12401 . - . ID=Phyra85711;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_289000003;logic_name=jgi_phyra1 scaffold_289 ensembl transcript 10896 12401 . - . ID=Phyra85711;Parent=Phyra85711;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_289 . CDS 10896 12401 . - 0 ID=Phyra85711;Parent=Phyra85711;rank=1 scaffold_289 . exon 10896 12401 . - . ID=Phyra85711.1;Parent=Phyra85711;constitutive=1;rank=1 scaffold_289 . repeat_region 15859 15882 . ? . description=trf scaffold_289 . repeat_region 15859 15882 . ? . description=dust scaffold_289 . repeat_region 16582 20343 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_288 1 21539 scaffold_288 . repeat_region 3430 7838 . ? . description=dust scaffold_288 . biological_region 8145 8147 0.999 - . logic_name=eponine scaffold_288 . repeat_region 12176 12218 . ? . description=trf scaffold_288 . biological_region 13201 13203 0.999 + . logic_name=eponine scaffold_288 . biological_region 13283 13288 0.999 + . logic_name=eponine scaffold_288 . biological_region 13328 13330 0.999 - . logic_name=eponine scaffold_288 ensembl protein_coding_gene 8003 8623 . - . ID=Phyra85707;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_288000001;logic_name=jgi_phyra1 scaffold_288 ensembl transcript 8003 8623 . - . ID=Phyra85707;Parent=Phyra85707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_288 . CDS 8003 8188 . - 0 ID=Phyra85707;Parent=Phyra85707;rank=3 scaffold_288 . exon 8003 8188 . - . ID=Phyra85707.3;Parent=Phyra85707;constitutive=1;rank=3 scaffold_288 . CDS 8415 8491 . - 0 ID=Phyra85707;Parent=Phyra85707;rank=2 scaffold_288 . exon 8415 8491 . - . ID=Phyra85707.2;Parent=Phyra85707;constitutive=1;ensembl_phase=1;rank=2 scaffold_288 . CDS 8548 8623 . - 0 ID=Phyra85707;Parent=Phyra85707;rank=1 scaffold_288 . exon 8548 8623 . - . ID=Phyra85707.1;Parent=Phyra85707;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_288 . repeat_region 14207 14506 . ? . description=dust scaffold_288 ensembl protein_coding_gene 19045 20117 . - . ID=Phyra85708;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_288000002;logic_name=jgi_phyra1 scaffold_288 ensembl transcript 19045 20117 . - . ID=Phyra85708;Parent=Phyra85708;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_288 . CDS 19045 19747 . - 0 ID=Phyra85708;Parent=Phyra85708;rank=3 scaffold_288 . exon 19045 19747 . - . ID=Phyra85708.3;Parent=Phyra85708;constitutive=1;ensembl_phase=2;rank=3 scaffold_288 . CDS 19830 20040 . - 0 ID=Phyra85708;Parent=Phyra85708;rank=2 scaffold_288 . exon 19830 20040 . - . ID=Phyra85708.2;Parent=Phyra85708;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_288 . CDS 20102 20117 . - 0 ID=Phyra85708;Parent=Phyra85708;rank=1 scaffold_288 . exon 20102 20117 . - . ID=Phyra85708.1;Parent=Phyra85708;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_286 1 21715 scaffold_286 . repeat_region 930 939 . ? . description=dust scaffold_286 . repeat_region 4615 4641 . ? . description=trf scaffold_286 ensembl protein_coding_gene 3651 4079 . - . ID=Phyra72363;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_286000001;logic_name=jgi_phyra1 scaffold_286 ensembl transcript 3651 4079 . - . ID=Phyra72363;Parent=Phyra72363;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_286 . CDS 3651 4079 . - 0 ID=Phyra72363;Parent=Phyra72363;rank=1 scaffold_286 . exon 3651 4079 . - . ID=Phyra72363.1;Parent=Phyra72363;constitutive=1;rank=1 scaffold_286 . biological_region 7451 7452 0.999 + . logic_name=eponine scaffold_286 . biological_region 11848 11853 0.999 - . logic_name=eponine scaffold_286 ensembl protein_coding_gene 10376 11504 . - . ID=Phyra85699;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_286000002;logic_name=jgi_phyra1 scaffold_286 ensembl transcript 10376 11504 . - . ID=Phyra85699;Parent=Phyra85699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_286 . CDS 10376 10546 . - 0 ID=Phyra85699;Parent=Phyra85699;rank=5 scaffold_286 . exon 10376 10546 . - . ID=Phyra85699.5;Parent=Phyra85699;constitutive=1;rank=5 scaffold_286 . CDS 10585 10764 . - 0 ID=Phyra85699;Parent=Phyra85699;rank=4 scaffold_286 . exon 10585 10764 . - . ID=Phyra85699.4;Parent=Phyra85699;constitutive=1;rank=4 scaffold_286 . CDS 10838 10892 . - 0 ID=Phyra85699;Parent=Phyra85699;rank=3 scaffold_286 . exon 10838 10892 . - . ID=Phyra85699.3;Parent=Phyra85699;constitutive=1;ensembl_phase=2;rank=3 scaffold_286 . CDS 11294 11410 . - 0 ID=Phyra85699;Parent=Phyra85699;rank=2 scaffold_286 . exon 11294 11410 . - . ID=Phyra85699.2;Parent=Phyra85699;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_286 . CDS 11497 11504 . - 0 ID=Phyra85699;Parent=Phyra85699;rank=1 scaffold_286 . exon 11497 11504 . - . ID=Phyra85699.1;Parent=Phyra85699;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_285 1 21834 scaffold_285 . biological_region 1315 1319 0.999 + . logic_name=eponine scaffold_285 . biological_region 1370 1373 0.999 - . logic_name=eponine scaffold_285 . repeat_region 1566 2020 . ? . description=dust scaffold_285 . repeat_region 2151 2176 . ? . description=trf scaffold_285 . repeat_region 2151 2176 . ? . description=dust scaffold_285 . repeat_region 3220 3288 . ? . description=dust scaffold_285 . biological_region 3856 3858 0.999 + . logic_name=eponine scaffold_285 . repeat_region 5038 5045 . ? . description=dust scaffold_285 . repeat_region 5242 5635 . - . description=Polinton-1_PI scaffold_285 . repeat_region 5782 5789 . ? . description=dust scaffold_285 . repeat_region 6042 6054 . ? . description=dust scaffold_285 ensembl protein_coding_gene 992 1564 . + . ID=Phyra46413;biotype=protein_coding;external_name=gwEuk.285.1.1;logic_name=jgi_phyra1 scaffold_285 ensembl transcript 992 1564 . + . ID=Phyra46413;Parent=Phyra46413;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_285 . CDS 992 1564 . + 0 ID=Phyra46413;Parent=Phyra46413;rank=1 scaffold_285 . exon 992 1564 . + . ID=Phyra46413.1;Parent=Phyra46413;constitutive=1;rank=1 scaffold_285 ensembl protein_coding_gene 6951 7550 . + . ID=Phyra85690;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_285000002;logic_name=jgi_phyra1 scaffold_285 ensembl transcript 6951 7550 . + . ID=Phyra85690;Parent=Phyra85690;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_285 . CDS 6951 7550 . + 0 ID=Phyra85690;Parent=Phyra85690;rank=1 scaffold_285 . exon 6951 7550 . + . ID=Phyra85690.1;Parent=Phyra85690;constitutive=1;rank=1 scaffold_285 ensembl protein_coding_gene 8097 10388 . + . ID=Phyra72360;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_285000001;logic_name=jgi_phyra1 scaffold_285 ensembl transcript 8097 10388 . + . ID=Phyra72360;Parent=Phyra72360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_285 . CDS 8097 8126 . + 0 ID=Phyra72360;Parent=Phyra72360;rank=1 scaffold_285 . exon 8097 8126 . + . ID=Phyra72360.1;Parent=Phyra72360;constitutive=1;rank=1 scaffold_285 . CDS 8169 9590 . + 0 ID=Phyra72360;Parent=Phyra72360;rank=2 scaffold_285 . exon 8169 9590 . + . ID=Phyra72360.2;Parent=Phyra72360;constitutive=1;rank=2 scaffold_285 . CDS 9618 9672 . + 0 ID=Phyra72360;Parent=Phyra72360;rank=3 scaffold_285 . exon 9618 9672 . + . ID=Phyra72360.3;Parent=Phyra72360;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_285 . CDS 9730 9836 . + 0 ID=Phyra72360;Parent=Phyra72360;rank=4 scaffold_285 . exon 9730 9836 . + . ID=Phyra72360.4;Parent=Phyra72360;constitutive=1;ensembl_phase=1;rank=4 scaffold_285 . CDS 9951 10388 . + 0 ID=Phyra72360;Parent=Phyra72360;rank=5 scaffold_285 . exon 9951 10388 . + . ID=Phyra72360.5;Parent=Phyra72360;constitutive=1;rank=5 scaffold_285 ensembl protein_coding_gene 11361 13067 . - . ID=Phyra85692;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_285000004;logic_name=jgi_phyra1 scaffold_285 ensembl transcript 11361 13067 . - . ID=Phyra85692;Parent=Phyra85692;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_285 . CDS 11361 13067 . - 0 ID=Phyra85692;Parent=Phyra85692;rank=1 scaffold_285 . exon 11361 13067 . - . ID=Phyra85692.1;Parent=Phyra85692;constitutive=1;rank=1 scaffold_285 ensembl protein_coding_gene 13372 14939 . + . ID=Phyra85693;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_285000005;logic_name=jgi_phyra1 scaffold_285 ensembl transcript 13372 14939 . + . ID=Phyra85693;Parent=Phyra85693;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_285 . CDS 13372 13538 . + 0 ID=Phyra85693;Parent=Phyra85693;rank=1 scaffold_285 . exon 13372 13538 . + . ID=Phyra85693.1;Parent=Phyra85693;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_285 . CDS 13599 13773 . + 0 ID=Phyra85693;Parent=Phyra85693;rank=2 scaffold_285 . exon 13599 13773 . + . ID=Phyra85693.2;Parent=Phyra85693;constitutive=1;ensembl_phase=2;rank=2 scaffold_285 . CDS 14130 14939 . + 0 ID=Phyra85693;Parent=Phyra85693;rank=3 scaffold_285 . exon 14130 14939 . + . ID=Phyra85693.3;Parent=Phyra85693;constitutive=1;rank=3 scaffold_285 . repeat_region 15071 15106 . ? . description=trf scaffold_285 . biological_region 15932 15934 0.999 - . logic_name=eponine scaffold_285 . biological_region 17136 17138 0.999 + . logic_name=eponine scaffold_285 . biological_region 18626 18627 0.999 - . logic_name=eponine scaffold_285 . repeat_region 19231 19240 . ? . description=dust scaffold_285 . repeat_region 21703 21717 . ? . description=dust scaffold_285 ensembl protein_coding_gene 15270 16187 . - . ID=Phyra72361;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_285000002;logic_name=jgi_phyra1 scaffold_285 ensembl transcript 15270 16187 . - . ID=Phyra72361;Parent=Phyra72361;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_285 . CDS 15270 16187 . - 0 ID=Phyra72361;Parent=Phyra72361;rank=1 scaffold_285 . exon 15270 16187 . - . ID=Phyra72361.1;Parent=Phyra72361;constitutive=1;rank=1 scaffold_285 ensembl protein_coding_gene 20469 21515 . + . ID=Phyra72362;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_285000003;logic_name=jgi_phyra1 scaffold_285 ensembl transcript 20469 21515 . + . ID=Phyra72362;Parent=Phyra72362;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_285 . CDS 20469 21515 . + 0 ID=Phyra72362;Parent=Phyra72362;rank=1 scaffold_285 . exon 20469 21515 . + . ID=Phyra72362.1;Parent=Phyra72362;constitutive=1;rank=1 scaffold_285 ensembl protein_coding_gene 17899 18717 . + . ID=Phyra85695;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_285000007;logic_name=jgi_phyra1 scaffold_285 ensembl transcript 17899 18717 . + . ID=Phyra85695;Parent=Phyra85695;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_285 . CDS 17899 18717 . + 0 ID=Phyra85695;Parent=Phyra85695;rank=1 scaffold_285 . exon 17899 18717 . + . ID=Phyra85695.1;Parent=Phyra85695;constitutive=1;rank=1 scaffold_285 ensembl protein_coding_gene 18965 19558 . - . ID=Phyra85696;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_285000008;logic_name=jgi_phyra1 scaffold_285 ensembl transcript 18965 19558 . - . ID=Phyra85696;Parent=Phyra85696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_285 . CDS 18965 19228 . - 0 ID=Phyra85696;Parent=Phyra85696;rank=2 scaffold_285 . exon 18965 19228 . - . ID=Phyra85696.2;Parent=Phyra85696;constitutive=1;rank=2 scaffold_285 . CDS 19310 19558 . - 0 ID=Phyra85696;Parent=Phyra85696;rank=1 scaffold_285 . exon 19310 19558 . - . ID=Phyra85696.1;Parent=Phyra85696;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_287 1 21869 scaffold_287 . biological_region 859 863 0.999 + . logic_name=eponine scaffold_287 . repeat_region 5520 5527 . ? . description=dust scaffold_287 ensembl protein_coding_gene 510 1349 . - . ID=Phyra85700;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_287000001;logic_name=jgi_phyra1 scaffold_287 ensembl transcript 510 1349 . - . ID=Phyra85700;Parent=Phyra85700;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_287 . CDS 510 1349 . - 0 ID=Phyra85700;Parent=Phyra85700;rank=1 scaffold_287 . exon 510 1349 . - . ID=Phyra85700.1;Parent=Phyra85700;constitutive=1;rank=1 scaffold_287 ensembl protein_coding_gene 5575 7435 . - . ID=Phyra85701;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_287000002;logic_name=jgi_phyra1 scaffold_287 ensembl transcript 5575 7435 . - . ID=Phyra85701;Parent=Phyra85701;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_287 . CDS 5575 6802 . - 0 ID=Phyra85701;Parent=Phyra85701;rank=3 scaffold_287 . exon 5575 6802 . - . ID=Phyra85701.3;Parent=Phyra85701;constitutive=1;ensembl_phase=2;rank=3 scaffold_287 . CDS 6877 7179 . - 0 ID=Phyra85701;Parent=Phyra85701;rank=2 scaffold_287 . exon 6877 7179 . - . ID=Phyra85701.2;Parent=Phyra85701;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_287 . CDS 7290 7435 . - 0 ID=Phyra85701;Parent=Phyra85701;rank=1 scaffold_287 . exon 7290 7435 . - . ID=Phyra85701.1;Parent=Phyra85701;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_287 . repeat_region 13962 14004 . ? . description=trf scaffold_287 ensembl protein_coding_gene 9131 10606 . - . ID=Phyra85702;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_287000003;logic_name=jgi_phyra1 scaffold_287 ensembl transcript 9131 10606 . - . ID=Phyra85702;Parent=Phyra85702;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_287 . CDS 9131 10162 . - 0 ID=Phyra85702;Parent=Phyra85702;rank=3 scaffold_287 . exon 9131 10162 . - . ID=Phyra85702.3;Parent=Phyra85702;constitutive=1;rank=3 scaffold_287 . CDS 10316 10386 . - 0 ID=Phyra85702;Parent=Phyra85702;rank=2 scaffold_287 . exon 10316 10386 . - . ID=Phyra85702.2;Parent=Phyra85702;constitutive=1;ensembl_phase=1;rank=2 scaffold_287 . CDS 10573 10606 . - 0 ID=Phyra85702;Parent=Phyra85702;rank=1 scaffold_287 . exon 10573 10606 . - . ID=Phyra85702.1;Parent=Phyra85702;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_287 ensembl protein_coding_gene 11015 12837 . + . ID=Phyra97154;biotype=protein_coding;external_name=C_scaffold_287000003;logic_name=jgi_phyra1 scaffold_287 ensembl transcript 11015 12837 . + . ID=Phyra97154;Parent=Phyra97154;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_287 . exon 11015 11211 . + . ID=Phyra97154.1;Parent=Phyra97154;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_287 . CDS 11016 11211 . + 0 ID=Phyra97154;Parent=Phyra97154;rank=1 scaffold_287 . CDS 11313 11486 . + 0 ID=Phyra97154;Parent=Phyra97154;rank=2 scaffold_287 . exon 11313 11486 . + . ID=Phyra97154.2;Parent=Phyra97154;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_287 . CDS 11565 11617 . + 0 ID=Phyra97154;Parent=Phyra97154;rank=3 scaffold_287 . exon 11565 11617 . + . ID=Phyra97154.3;Parent=Phyra97154;constitutive=1;ensembl_phase=1;rank=3 scaffold_287 . CDS 11684 11783 . + 0 ID=Phyra97154;Parent=Phyra97154;rank=4 scaffold_287 . exon 11684 11783 . + . ID=Phyra97154.4;Parent=Phyra97154;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_287 . CDS 11922 12288 . + 0 ID=Phyra97154;Parent=Phyra97154;rank=5 scaffold_287 . exon 11922 12288 . + . ID=Phyra97154.5;Parent=Phyra97154;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_287 . CDS 12363 12429 . + 0 ID=Phyra97154;Parent=Phyra97154;rank=6 scaffold_287 . exon 12363 12429 . + . ID=Phyra97154.6;Parent=Phyra97154;constitutive=1;ensembl_phase=2;rank=6 scaffold_287 . CDS 12547 12651 . + 0 ID=Phyra97154;Parent=Phyra97154;rank=7 scaffold_287 . exon 12547 12651 . + . ID=Phyra97154.7;Parent=Phyra97154;constitutive=1;rank=7 scaffold_287 . CDS 12730 12837 . + 0 ID=Phyra97154;Parent=Phyra97154;rank=8 scaffold_287 . exon 12730 12837 . + . ID=Phyra97154.8;Parent=Phyra97154;constitutive=1;rank=8 scaffold_287 ensembl protein_coding_gene 13196 14170 . - . ID=Phyra97155;biotype=protein_coding;external_name=C_scaffold_287000004;logic_name=jgi_phyra1 scaffold_287 ensembl transcript 13196 14170 . - . ID=Phyra97155;Parent=Phyra97155;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_287 . CDS 13196 13443 . - 0 ID=Phyra97155;Parent=Phyra97155;rank=3 scaffold_287 . exon 13196 13443 . - . ID=Phyra97155.3;Parent=Phyra97155;constitutive=1;ensembl_phase=1;rank=3 scaffold_287 . CDS 13522 13963 . - 0 ID=Phyra97155;Parent=Phyra97155;rank=2 scaffold_287 . exon 13522 13963 . - . ID=Phyra97155.2;Parent=Phyra97155;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_287 . CDS 13985 14170 . - 0 ID=Phyra97155;Parent=Phyra97155;rank=1 scaffold_287 . exon 13985 14170 . - . ID=Phyra97155.1;Parent=Phyra97155;constitutive=1;rank=1 scaffold_287 ensembl protein_coding_gene 14485 17122 . + . ID=Phyra97158;biotype=protein_coding;external_name=C_scaffold_287000007;logic_name=jgi_phyra1 scaffold_287 ensembl transcript 14485 17122 . + . ID=Phyra97158;Parent=Phyra97158;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_287 . CDS 14485 14888 . + 0 ID=Phyra97158;Parent=Phyra97158;rank=1 scaffold_287 . exon 14485 14888 . + . ID=Phyra97158.1;Parent=Phyra97158;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_287 . CDS 14974 15015 . + 0 ID=Phyra97158;Parent=Phyra97158;rank=2 scaffold_287 . CDS 15111 15209 . + 0 ID=Phyra97158;Parent=Phyra97158;rank=3 scaffold_287 . CDS 15292 15805 . + 0 ID=Phyra97158;Parent=Phyra97158;rank=4 scaffold_287 . CDS 15903 16153 . + 0 ID=Phyra97158;Parent=Phyra97158;rank=5 scaffold_287 . CDS 16225 16437 . + 0 ID=Phyra97158;Parent=Phyra97158;rank=6 scaffold_287 . CDS 16516 16777 . + 0 ID=Phyra97158;Parent=Phyra97158;rank=7 scaffold_287 . CDS 16859 17122 . + 0 ID=Phyra97158;Parent=Phyra97158;rank=8 scaffold_287 . repeat_region 14552 14607 . ? . description=dust scaffold_287 . biological_region 19054 19059 0.999 + . logic_name=eponine scaffold_287 . repeat_region 20022 20075 . ? . description=dust scaffold_287 ensembl protein_coding_gene 18027 18911 . - . ID=Phyra85705;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_287000006;logic_name=jgi_phyra1 scaffold_287 ensembl transcript 18027 18911 . - . ID=Phyra85705;Parent=Phyra85705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_287 . CDS 18027 18911 . - 0 ID=Phyra85705;Parent=Phyra85705;rank=1 scaffold_287 . exon 18027 18911 . - . ID=Phyra85705.1;Parent=Phyra85705;constitutive=1;rank=1 scaffold_287 ensembl protein_coding_gene 20602 21319 . - . ID=Phyra85706;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_287000007;logic_name=jgi_phyra1 scaffold_287 ensembl transcript 20602 21319 . - . ID=Phyra85706;Parent=Phyra85706;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_287 . CDS 20602 21158 . - 0 ID=Phyra85706;Parent=Phyra85706;rank=2 scaffold_287 . exon 20602 21158 . - . ID=Phyra85706.2;Parent=Phyra85706;constitutive=1;ensembl_phase=1;rank=2 scaffold_287 . CDS 21310 21319 . - 0 ID=Phyra85706;Parent=Phyra85706;rank=1 scaffold_287 . exon 21310 21319 . - . ID=Phyra85706.1;Parent=Phyra85706;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_287 . exon 14974 15015 . + . ID=Phyra97158.2;Parent=Phyra97158;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_287 . exon 15111 15209 . + . ID=Phyra97158.3;Parent=Phyra97158;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_287 . exon 15292 15805 . + . ID=Phyra97158.4;Parent=Phyra97158;constitutive=1;ensembl_phase=2;rank=4 scaffold_287 . exon 15903 16153 . + . ID=Phyra97158.5;Parent=Phyra97158;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_287 . exon 16225 16437 . + . ID=Phyra97158.6;Parent=Phyra97158;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_287 . exon 16516 16777 . + . ID=Phyra97158.7;Parent=Phyra97158;constitutive=1;ensembl_phase=2;rank=7 scaffold_287 . exon 16859 17122 . + . ID=Phyra97158.8;Parent=Phyra97158;constitutive=1;rank=8 ##gff-version 3 ##sequence-region scaffold_284 1 22590 scaffold_284 . repeat_region 2578 3364 . ? . description=dust scaffold_284 . biological_region 3929 3932 0.999 + . logic_name=eponine scaffold_284 . repeat_region 4431 6447 . ? . description=dust scaffold_284 . repeat_region 6448 8620 . - . description=GypsyPi-1c_I-int scaffold_284 . biological_region 6976 6977 0.999 - . logic_name=eponine scaffold_284 ensembl protein_coding_gene 6829 12593 . - . ID=Phyra85687;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_284000001;logic_name=jgi_phyra1 scaffold_284 ensembl transcript 6829 12593 . - . ID=Phyra85687;Parent=Phyra85687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_284 . CDS 6829 6881 . - 0 ID=Phyra85687;Parent=Phyra85687;rank=7 scaffold_284 . exon 6829 6881 . - . ID=Phyra85687.7;Parent=Phyra85687;constitutive=1;ensembl_phase=1;rank=7 scaffold_284 . CDS 6952 8863 . - 0 ID=Phyra85687;Parent=Phyra85687;rank=6 scaffold_284 . exon 6952 8863 . - . ID=Phyra85687.6;Parent=Phyra85687;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_284 . CDS 9227 9823 . - 0 ID=Phyra85687;Parent=Phyra85687;rank=5 scaffold_284 . CDS 9951 10050 . - 0 ID=Phyra85687;Parent=Phyra85687;rank=4 scaffold_284 . CDS 10123 10265 . - 0 ID=Phyra85687;Parent=Phyra85687;rank=3 scaffold_284 . CDS 10329 10777 . - 0 ID=Phyra85687;Parent=Phyra85687;rank=2 scaffold_284 . CDS 12005 12593 . - 0 ID=Phyra85687;Parent=Phyra85687;rank=1 scaffold_284 . exon 9227 9823 . - . ID=Phyra85687.5;Parent=Phyra85687;constitutive=1;rank=5 scaffold_284 . exon 9951 10050 . - . ID=Phyra85687.4;Parent=Phyra85687;constitutive=1;ensembl_phase=2;rank=4 scaffold_284 . exon 10123 10265 . - . ID=Phyra85687.3;Parent=Phyra85687;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_284 . exon 10329 10777 . - . ID=Phyra85687.2;Parent=Phyra85687;constitutive=1;ensembl_phase=1;rank=2 scaffold_284 . exon 12005 12593 . - . ID=Phyra85687.1;Parent=Phyra85687;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_284 . repeat_region 16162 16188 . ? . description=trf scaffold_284 . repeat_region 16162 16188 . ? . description=dust scaffold_284 . repeat_region 16507 16514 . ? . description=dust scaffold_284 . repeat_region 17989 18559 . ? . description=dust scaffold_284 . repeat_region 20059 21039 . ? . description=dust scaffold_284 . repeat_region 22224 22233 . ? . description=dust scaffold_284 ensembl protein_coding_gene 21248 21938 . - . ID=Phyra85688;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_284000002;logic_name=jgi_phyra1 scaffold_284 ensembl transcript 21248 21938 . - . ID=Phyra85688;Parent=Phyra85688;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_284 . CDS 21248 21257 . - 0 ID=Phyra85688;Parent=Phyra85688;rank=2 scaffold_284 . exon 21248 21257 . - . ID=Phyra85688.2;Parent=Phyra85688;constitutive=1;ensembl_phase=2;rank=2 scaffold_284 . CDS 21301 21938 . - 0 ID=Phyra85688;Parent=Phyra85688;rank=1 scaffold_284 . exon 21301 21938 . - . ID=Phyra85688.1;Parent=Phyra85688;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_283 1 23192 scaffold_283 . repeat_region 3613 3757 . ? . description=dust scaffold_283 . repeat_region 6978 12494 . ? . description=dust scaffold_283 . repeat_region 13746 13783 . ? . description=trf scaffold_283 ensembl protein_coding_gene 13688 14269 . + . ID=Phyra85685;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_283000001;logic_name=jgi_phyra1 scaffold_283 ensembl transcript 13688 14269 . + . ID=Phyra85685;Parent=Phyra85685;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_283 . CDS 13688 14002 . + 0 ID=Phyra85685;Parent=Phyra85685;rank=1 scaffold_283 . exon 13688 14002 . + . ID=Phyra85685.1;Parent=Phyra85685;constitutive=1;rank=1 scaffold_283 . CDS 14207 14269 . + 0 ID=Phyra85685;Parent=Phyra85685;rank=2 scaffold_283 . exon 14207 14269 . + . ID=Phyra85685.2;Parent=Phyra85685;constitutive=1;rank=2 scaffold_283 . repeat_region 16224 21894 . ? . description=dust scaffold_283 . repeat_region 22594 22626 . ? . description=dust scaffold_283 ensembl protein_coding_gene 15646 16050 . - . ID=Phyra85686;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_283000002;logic_name=jgi_phyra1 scaffold_283 ensembl transcript 15646 16050 . - . ID=Phyra85686;Parent=Phyra85686;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_283 . CDS 15646 16050 . - 0 ID=Phyra85686;Parent=Phyra85686;rank=1 scaffold_283 . exon 15646 16050 . - . ID=Phyra85686.1;Parent=Phyra85686;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_279 1 23330 scaffold_279 . repeat_region 302 626 . ? . description=trf scaffold_279 . repeat_region 730 816 . ? . description=trf scaffold_279 . repeat_region 1412 6813 . ? . description=dust scaffold_279 ensembl protein_coding_gene 6828 7094 . - . ID=Phyra46270;biotype=protein_coding;external_name=gwEuk.279.1.1;logic_name=jgi_phyra1 scaffold_279 ensembl transcript 6828 7094 . - . ID=Phyra46270;Parent=Phyra46270;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_279 . CDS 6828 7094 . - 0 ID=Phyra46270;Parent=Phyra46270;rank=1 scaffold_279 . exon 6828 7094 . - . ID=Phyra46270.1;Parent=Phyra46270;constitutive=1;rank=1 scaffold_279 . repeat_region 12510 12656 . - . description=Polinton-1_PI scaffold_279 . repeat_region 12735 13019 . + . description=Polinton-1_PI scaffold_279 . repeat_region 14330 14613 . + . description=Polinton-1_PI scaffold_279 . repeat_region 15385 15673 . + . description=Polinton-1_PI scaffold_279 ensembl protein_coding_gene 12858 14174 . + . ID=Phyra72359;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_279000001;logic_name=jgi_phyra1 scaffold_279 ensembl transcript 12858 14174 . + . ID=Phyra72359;Parent=Phyra72359;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_279 . CDS 12858 14174 . + 0 ID=Phyra72359;Parent=Phyra72359;rank=1 scaffold_279 . exon 12858 14174 . + . ID=Phyra72359.1;Parent=Phyra72359;constitutive=1;rank=1 scaffold_279 ensembl protein_coding_gene 8151 9663 . - . ID=Phyra85670;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_279000001;logic_name=jgi_phyra1 scaffold_279 ensembl transcript 8151 9663 . - . ID=Phyra85670;Parent=Phyra85670;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_279 . CDS 8151 8160 . - 0 ID=Phyra85670;Parent=Phyra85670;rank=6 scaffold_279 . exon 8151 8160 . - . ID=Phyra85670.6;Parent=Phyra85670;constitutive=1;ensembl_phase=2;rank=6 scaffold_279 . CDS 8214 8531 . - 0 ID=Phyra85670;Parent=Phyra85670;rank=5 scaffold_279 . exon 8214 8531 . - . ID=Phyra85670.5;Parent=Phyra85670;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_279 . CDS 8600 8804 . - 0 ID=Phyra85670;Parent=Phyra85670;rank=4 scaffold_279 . exon 8600 8804 . - . ID=Phyra85670.4;Parent=Phyra85670;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_279 . CDS 8861 8924 . - 0 ID=Phyra85670;Parent=Phyra85670;rank=3 scaffold_279 . exon 8861 8924 . - . ID=Phyra85670.3;Parent=Phyra85670;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_279 . CDS 9027 9235 . - 0 ID=Phyra85670;Parent=Phyra85670;rank=2 scaffold_279 . exon 9027 9235 . - . ID=Phyra85670.2;Parent=Phyra85670;constitutive=1;ensembl_phase=1;rank=2 scaffold_279 . CDS 9657 9663 . - 0 ID=Phyra85670;Parent=Phyra85670;rank=1 scaffold_279 . exon 9657 9663 . - . ID=Phyra85670.1;Parent=Phyra85670;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_279 ensembl protein_coding_gene 14452 15053 . + . ID=Phyra85672;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_279000003;logic_name=jgi_phyra1 scaffold_279 ensembl transcript 14452 15053 . + . ID=Phyra85672;Parent=Phyra85672;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_279 . CDS 14452 14845 . + 0 ID=Phyra85672;Parent=Phyra85672;rank=1 scaffold_279 . exon 14452 14845 . + . ID=Phyra85672.1;Parent=Phyra85672;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_279 . CDS 15025 15053 . + 0 ID=Phyra85672;Parent=Phyra85672;rank=2 scaffold_279 . exon 15025 15053 . + . ID=Phyra85672.2;Parent=Phyra85672;constitutive=1;ensembl_phase=1;rank=2 scaffold_279 . repeat_region 15581 15617 . ? . description=trf scaffold_279 . repeat_region 15630 15637 . ? . description=dust scaffold_279 . repeat_region 16263 16346 . ? . description=dust scaffold_279 . repeat_region 17060 17069 . ? . description=dust scaffold_279 . repeat_region 17267 17536 . ? . description=dust scaffold_279 . repeat_region 17751 17758 . ? . description=dust scaffold_279 . repeat_region 21234 22165 . ? . description=dust scaffold_279 . biological_region 22544 22547 0.999 + . logic_name=eponine scaffold_279 ensembl protein_coding_gene 22173 23249 . + . ID=Phyra85673;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_279000004;logic_name=jgi_phyra1 scaffold_279 ensembl transcript 22173 23249 . + . ID=Phyra85673;Parent=Phyra85673;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_279 . CDS 22173 23249 . + 0 ID=Phyra85673;Parent=Phyra85673;rank=1 scaffold_279 . exon 22173 23249 . + . ID=Phyra85673.1;Parent=Phyra85673;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_282 1 23413 scaffold_282 . repeat_region 716 745 . ? . description=trf scaffold_282 . repeat_region 1031 5182 . ? . description=dust scaffold_282 . biological_region 7043 7047 0.999 + . logic_name=eponine scaffold_282 . repeat_region 7632 7671 . ? . description=trf scaffold_282 ensembl protein_coding_gene 17 515 . - . ID=Phyra85681;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_282000001;logic_name=jgi_phyra1 scaffold_282 ensembl transcript 17 515 . - . ID=Phyra85681;Parent=Phyra85681;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_282 . CDS 17 515 . - 0 ID=Phyra85681;Parent=Phyra85681;rank=1 scaffold_282 . exon 17 515 . - . ID=Phyra85681.1;Parent=Phyra85681;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_282 ensembl protein_coding_gene 5882 6244 . + . ID=Phyra85682;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_282000002;logic_name=jgi_phyra1 scaffold_282 ensembl transcript 5882 6244 . + . ID=Phyra85682;Parent=Phyra85682;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_282 . CDS 5882 6244 . + 0 ID=Phyra85682;Parent=Phyra85682;rank=1 scaffold_282 . exon 5882 6244 . + . ID=Phyra85682.1;Parent=Phyra85682;constitutive=1;rank=1 scaffold_282 ensembl protein_coding_gene 7020 8167 . + . ID=Phyra85683;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_282000003;logic_name=jgi_phyra1 scaffold_282 ensembl transcript 7020 8167 . + . ID=Phyra85683;Parent=Phyra85683;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_282 . CDS 7020 8136 . + 0 ID=Phyra85683;Parent=Phyra85683;rank=1 scaffold_282 . exon 7020 8136 . + . ID=Phyra85683.1;Parent=Phyra85683;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_282 . CDS 8157 8167 . + 0 ID=Phyra85683;Parent=Phyra85683;rank=2 scaffold_282 . exon 8157 8167 . + . ID=Phyra85683.2;Parent=Phyra85683;constitutive=1;ensembl_phase=1;rank=2 scaffold_282 . repeat_region 17119 17899 . ? . description=dust scaffold_282 . repeat_region 18777 22542 . ? . description=dust scaffold_282 ensembl protein_coding_gene 15843 16790 . - . ID=Phyra85684;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_282000004;logic_name=jgi_phyra1 scaffold_282 ensembl transcript 15843 16790 . - . ID=Phyra85684;Parent=Phyra85684;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_282 . CDS 15843 16790 . - 0 ID=Phyra85684;Parent=Phyra85684;rank=1 scaffold_282 . exon 15843 16790 . - . ID=Phyra85684.1;Parent=Phyra85684;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_281 1 23510 scaffold_281 . repeat_region 564 605 . ? . description=trf scaffold_281 . repeat_region 941 997 . ? . description=trf scaffold_281 . repeat_region 941 997 . ? . description=trf scaffold_281 . repeat_region 1069 1153 . ? . description=trf scaffold_281 . repeat_region 1261 1309 . ? . description=trf scaffold_281 . repeat_region 3200 3394 . ? . description=dust scaffold_281 . biological_region 3788 3788 0.999 + . logic_name=eponine scaffold_281 . biological_region 7460 7464 0.999 + . logic_name=eponine scaffold_281 ensembl protein_coding_gene 1876 4300 . + . ID=Phyra85679;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_281000001;logic_name=jgi_phyra1 scaffold_281 ensembl transcript 1876 4300 . + . ID=Phyra85679;Parent=Phyra85679;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_281 . CDS 1876 3093 . + 0 ID=Phyra85679;Parent=Phyra85679;rank=1 scaffold_281 . exon 1876 3093 . + . ID=Phyra85679.1;Parent=Phyra85679;constitutive=1;rank=1 scaffold_281 . CDS 3527 4300 . + 0 ID=Phyra85679;Parent=Phyra85679;rank=2 scaffold_281 . exon 3527 4300 . + . ID=Phyra85679.2;Parent=Phyra85679;constitutive=1;rank=2 scaffold_281 ensembl protein_coding_gene 5643 9585 . + . ID=Phyra85680;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_281000002;logic_name=jgi_phyra1 scaffold_281 ensembl transcript 5643 9585 . + . ID=Phyra85680;Parent=Phyra85680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_281 . CDS 5643 6524 . + 0 ID=Phyra85680;Parent=Phyra85680;rank=1 scaffold_281 . exon 5643 6524 . + . ID=Phyra85680.1;Parent=Phyra85680;constitutive=1;rank=1 scaffold_281 . CDS 6632 7303 . + 0 ID=Phyra85680;Parent=Phyra85680;rank=2 scaffold_281 . exon 6632 7303 . + . ID=Phyra85680.2;Parent=Phyra85680;constitutive=1;rank=2 scaffold_281 . CDS 7654 8147 . + 0 ID=Phyra85680;Parent=Phyra85680;rank=3 scaffold_281 . exon 7654 8147 . + . ID=Phyra85680.3;Parent=Phyra85680;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_281 . CDS 8324 8493 . + 0 ID=Phyra85680;Parent=Phyra85680;rank=4 scaffold_281 . CDS 8674 9224 . + 0 ID=Phyra85680;Parent=Phyra85680;rank=5 scaffold_281 . CDS 9430 9585 . + 0 ID=Phyra85680;Parent=Phyra85680;rank=6 scaffold_281 . exon 8324 8493 . + . ID=Phyra85680.4;Parent=Phyra85680;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_281 . exon 8674 9224 . + . ID=Phyra85680.5;Parent=Phyra85680;constitutive=1;ensembl_phase=1;rank=5 scaffold_281 . exon 9430 9585 . + . ID=Phyra85680.6;Parent=Phyra85680;constitutive=1;rank=6 scaffold_281 . repeat_region 14238 19150 . ? . description=dust scaffold_281 . biological_region 19562 19566 0.999 - . logic_name=eponine scaffold_281 . repeat_region 20088 20097 . ? . description=dust scaffold_281 . repeat_region 20490 20719 . + . description=GypsyPi-1c_LTR scaffold_281 . repeat_region 20872 20884 . ? . description=dust scaffold_281 . repeat_region 21253 21305 . ? . description=trf scaffold_281 . repeat_region 21593 21969 . ? . description=dust scaffold_281 . repeat_region 22288 22296 . ? . description=dust scaffold_281 ensembl protein_coding_gene 19198 19692 . - . ID=Phyra46388;biotype=protein_coding;external_name=gwEuk.281.6.1;logic_name=jgi_phyra1 scaffold_281 ensembl transcript 19198 19692 . - . ID=Phyra46388;Parent=Phyra46388;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_281 . CDS 19198 19692 . - 0 ID=Phyra46388;Parent=Phyra46388;rank=1 scaffold_281 . exon 19198 19692 . - . ID=Phyra46388.1;Parent=Phyra46388;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_280 1 23667 scaffold_280 . repeat_region 1747 1780 . ? . description=trf scaffold_280 . repeat_region 3258 3286 . ? . description=trf scaffold_280 . repeat_region 3738 3787 . ? . description=dust scaffold_280 . repeat_region 4462 4519 . ? . description=trf scaffold_280 . repeat_region 4612 4852 . ? . description=dust scaffold_280 . repeat_region 6834 7112 . ? . description=dust scaffold_280 . biological_region 7216 7220 0.999 + . logic_name=eponine scaffold_280 . repeat_region 7598 7655 . ? . description=trf scaffold_280 ensembl protein_coding_gene 1794 2558 . + . ID=Phyra85674;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_280000001;logic_name=jgi_phyra1 scaffold_280 ensembl transcript 1794 2558 . + . ID=Phyra85674;Parent=Phyra85674;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_280 . CDS 1794 2558 . + 0 ID=Phyra85674;Parent=Phyra85674;rank=1 scaffold_280 . exon 1794 2558 . + . ID=Phyra85674.1;Parent=Phyra85674;constitutive=1;rank=1 scaffold_280 ensembl protein_coding_gene 4899 7479 . + . ID=Phyra85675;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_280000002;logic_name=jgi_phyra1 scaffold_280 ensembl transcript 4899 7479 . + . ID=Phyra85675;Parent=Phyra85675;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_280 . CDS 4899 6818 . + 0 ID=Phyra85675;Parent=Phyra85675;rank=1 scaffold_280 . exon 4899 6818 . + . ID=Phyra85675.1;Parent=Phyra85675;constitutive=1;rank=1 scaffold_280 . CDS 7237 7479 . + 0 ID=Phyra85675;Parent=Phyra85675;rank=2 scaffold_280 . exon 7237 7479 . + . ID=Phyra85675.2;Parent=Phyra85675;constitutive=1;rank=2 scaffold_280 ensembl protein_coding_gene 12399 13571 . + . ID=Phyra85676;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_280000003;logic_name=jgi_phyra1 scaffold_280 ensembl transcript 12399 13571 . + . ID=Phyra85676;Parent=Phyra85676;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_280 . CDS 12399 13571 . + 0 ID=Phyra85676;Parent=Phyra85676;rank=1 scaffold_280 . exon 12399 13571 . + . ID=Phyra85676.1;Parent=Phyra85676;constitutive=1;rank=1 scaffold_280 . repeat_region 17415 20285 . ? . description=dust scaffold_280 . biological_region 20899 20899 0.999 - . logic_name=eponine scaffold_280 . biological_region 21076 21079 0.999 - . logic_name=eponine scaffold_280 . biological_region 21112 21113 0.999 + . logic_name=eponine scaffold_280 . biological_region 21132 21134 0.999 + . logic_name=eponine scaffold_280 . biological_region 21187 21191 0.999 - . logic_name=eponine scaffold_280 ensembl protein_coding_gene 20961 22190 . + . ID=Phyra85677;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_280000004;logic_name=jgi_phyra1 scaffold_280 ensembl transcript 20961 22190 . + . ID=Phyra85677;Parent=Phyra85677;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_280 . CDS 20961 21438 . + 0 ID=Phyra85677;Parent=Phyra85677;rank=1 scaffold_280 . exon 20961 21438 . + . ID=Phyra85677.1;Parent=Phyra85677;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_280 . CDS 21515 21675 . + 0 ID=Phyra85677;Parent=Phyra85677;rank=2 scaffold_280 . exon 21515 21675 . + . ID=Phyra85677.2;Parent=Phyra85677;constitutive=1;ensembl_phase=1;rank=2 scaffold_280 . CDS 21745 21856 . + 0 ID=Phyra85677;Parent=Phyra85677;rank=3 scaffold_280 . exon 21745 21856 . + . ID=Phyra85677.3;Parent=Phyra85677;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_280 . CDS 21935 22006 . + 0 ID=Phyra85677;Parent=Phyra85677;rank=4 scaffold_280 . exon 21935 22006 . + . ID=Phyra85677.4;Parent=Phyra85677;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_280 . CDS 22069 22190 . + 0 ID=Phyra85677;Parent=Phyra85677;rank=5 scaffold_280 . exon 22069 22190 . + . ID=Phyra85677.5;Parent=Phyra85677;constitutive=1;ensembl_phase=1;rank=5 scaffold_280 ensembl protein_coding_gene 22382 23658 . - . ID=Phyra85678;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_280000005;logic_name=jgi_phyra1 scaffold_280 ensembl transcript 22382 23658 . - . ID=Phyra85678;Parent=Phyra85678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_280 . CDS 22382 23656 . - 0 ID=Phyra85678;Parent=Phyra85678;rank=1 scaffold_280 . exon 22382 23658 . - . ID=Phyra85678.1;Parent=Phyra85678;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_278 1 23783 scaffold_278 . repeat_region 843 6497 . ? . description=dust scaffold_278 ensembl protein_coding_gene 7557 7718 . + . ID=Phyra46255;biotype=protein_coding;external_name=gwEuk.278.1.1;logic_name=jgi_phyra1 scaffold_278 ensembl transcript 7557 7718 . + . ID=Phyra46255;Parent=Phyra46255;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_278 . CDS 7557 7718 . + 0 ID=Phyra46255;Parent=Phyra46255;rank=1 scaffold_278 . exon 7557 7718 . + . ID=Phyra46255.1;Parent=Phyra46255;constitutive=1;rank=1 scaffold_278 ensembl protein_coding_gene 6594 7321 . - . ID=Phyra85666;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_278000001;logic_name=jgi_phyra1 scaffold_278 ensembl transcript 6594 7321 . - . ID=Phyra85666;Parent=Phyra85666;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_278 . CDS 6594 6610 . - 0 ID=Phyra85666;Parent=Phyra85666;rank=2 scaffold_278 . exon 6594 6610 . - . ID=Phyra85666.2;Parent=Phyra85666;constitutive=1;ensembl_phase=1;rank=2 scaffold_278 . CDS 6778 7321 . - 0 ID=Phyra85666;Parent=Phyra85666;rank=1 scaffold_278 . exon 6778 7321 . - . ID=Phyra85666.1;Parent=Phyra85666;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_278 . repeat_region 8185 8210 . ? . description=trf scaffold_278 . biological_region 14305 14306 0.999 - . logic_name=eponine scaffold_278 ensembl protein_coding_gene 12918 14211 . - . ID=Phyra85668;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_278000003;logic_name=jgi_phyra1 scaffold_278 ensembl transcript 12918 14211 . - . ID=Phyra85668;Parent=Phyra85668;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_278 . CDS 12918 12934 . - 0 ID=Phyra85668;Parent=Phyra85668;rank=2 scaffold_278 . exon 12918 12934 . - . ID=Phyra85668.2;Parent=Phyra85668;constitutive=1;ensembl_phase=1;rank=2 scaffold_278 . CDS 13053 14211 . - 0 ID=Phyra85668;Parent=Phyra85668;rank=1 scaffold_278 . exon 13053 14211 . - . ID=Phyra85668.1;Parent=Phyra85668;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_278 . repeat_region 16132 16181 . ? . description=dust scaffold_278 . repeat_region 17100 19279 . ? . description=dust scaffold_278 . repeat_region 20056 20755 . ? . description=dust scaffold_278 ensembl protein_coding_gene 20950 23748 . - . ID=Phyra85669;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_278000004;logic_name=jgi_phyra1 scaffold_278 ensembl transcript 20950 23748 . - . ID=Phyra85669;Parent=Phyra85669;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_278 . CDS 20950 21570 . - 0 ID=Phyra85669;Parent=Phyra85669;rank=3 scaffold_278 . exon 20950 21570 . - . ID=Phyra85669.3;Parent=Phyra85669;constitutive=1;rank=3 scaffold_278 . CDS 21644 22633 . - 0 ID=Phyra85669;Parent=Phyra85669;rank=2 scaffold_278 . exon 21644 22633 . - . ID=Phyra85669.2;Parent=Phyra85669;constitutive=1;rank=2 scaffold_278 . CDS 22960 23748 . - 0 ID=Phyra85669;Parent=Phyra85669;rank=1 scaffold_278 . exon 22960 23748 . - . ID=Phyra85669.1;Parent=Phyra85669;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_275 1 24164 scaffold_275 . repeat_region 1621 1636 . ? . description=dust scaffold_275 . repeat_region 3239 3252 . ? . description=dust scaffold_275 . repeat_region 3563 3612 . ? . description=dust scaffold_275 . repeat_region 4487 5075 . ? . description=dust scaffold_275 . repeat_region 5153 5160 . ? . description=dust scaffold_275 . repeat_region 8722 8782 . ? . description=trf scaffold_275 . repeat_region 10094 10129 . ? . description=trf scaffold_275 . biological_region 11791 11793 0.999 + . logic_name=eponine scaffold_275 . biological_region 13040 13043 0.999 + . logic_name=eponine scaffold_275 . biological_region 13057 13060 0.999 - . logic_name=eponine scaffold_275 . biological_region 13160 13164 0.999 + . logic_name=eponine scaffold_275 . repeat_region 13695 14869 . + . description=GypsyPi-1c_I-int scaffold_275 . repeat_region 14944 15647 . + . description=GypsyPi-1c_I-int scaffold_275 . repeat_region 15952 16230 . + . description=GypsyPi-1c_I-int scaffold_275 ensembl protein_coding_gene 15184 15576 . + . ID=Phyra46223;biotype=protein_coding;external_name=gwEuk.275.1.1;logic_name=jgi_phyra1 scaffold_275 ensembl transcript 15184 15576 . + . ID=Phyra46223;Parent=Phyra46223;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_275 . CDS 15184 15576 . + 0 ID=Phyra46223;Parent=Phyra46223;rank=1 scaffold_275 . exon 15184 15576 . + . ID=Phyra46223.1;Parent=Phyra46223;constitutive=1;rank=1 scaffold_275 ensembl protein_coding_gene 13410 14745 . + . ID=Phyra85658;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_275000001;logic_name=jgi_phyra1 scaffold_275 ensembl transcript 13410 14745 . + . ID=Phyra85658;Parent=Phyra85658;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_275 . CDS 13410 13882 . + 0 ID=Phyra85658;Parent=Phyra85658;rank=1 scaffold_275 . exon 13410 13882 . + . ID=Phyra85658.1;Parent=Phyra85658;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_275 . CDS 13997 14648 . + 0 ID=Phyra85658;Parent=Phyra85658;rank=2 scaffold_275 . exon 13997 14648 . + . ID=Phyra85658.2;Parent=Phyra85658;constitutive=1;ensembl_phase=2;rank=2 scaffold_275 . CDS 14707 14745 . + 0 ID=Phyra85658;Parent=Phyra85658;rank=3 scaffold_275 . exon 14707 14745 . + . ID=Phyra85658.3;Parent=Phyra85658;constitutive=1;rank=3 scaffold_275 . repeat_region 16474 16494 . ? . description=dust scaffold_275 ensembl protein_coding_gene 16247 17806 . - . ID=Phyra85659;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_275000002;logic_name=jgi_phyra1 scaffold_275 ensembl transcript 16247 17806 . - . ID=Phyra85659;Parent=Phyra85659;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_275 . CDS 16247 16405 . - 0 ID=Phyra85659;Parent=Phyra85659;rank=5 scaffold_275 . exon 16247 16405 . - . ID=Phyra85659.5;Parent=Phyra85659;constitutive=1;rank=5 scaffold_275 . CDS 16519 16646 . - 0 ID=Phyra85659;Parent=Phyra85659;rank=4 scaffold_275 . exon 16519 16646 . - . ID=Phyra85659.4;Parent=Phyra85659;constitutive=1;ensembl_phase=1;rank=4 scaffold_275 . CDS 16683 16742 . - 0 ID=Phyra85659;Parent=Phyra85659;rank=3 scaffold_275 . exon 16683 16742 . - . ID=Phyra85659.3;Parent=Phyra85659;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_275 . CDS 16813 16872 . - 0 ID=Phyra85659;Parent=Phyra85659;rank=2 scaffold_275 . exon 16813 16872 . - . ID=Phyra85659.2;Parent=Phyra85659;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_275 . CDS 16927 17806 . - 0 ID=Phyra85659;Parent=Phyra85659;rank=1 scaffold_275 . exon 16927 17806 . - . ID=Phyra85659.1;Parent=Phyra85659;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_276 1 24581 scaffold_276 . repeat_region 4672 5749 . ? . description=dust scaffold_276 . biological_region 6315 6321 0.999 + . logic_name=eponine scaffold_276 . biological_region 6346 6351 0.999 - . logic_name=eponine scaffold_276 . biological_region 6409 6409 0.999 - . logic_name=eponine scaffold_276 . repeat_region 7766 7779 . ? . description=dust scaffold_276 ensembl protein_coding_gene 2386 3819 . + . ID=Phyra85660;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_276000001;logic_name=jgi_phyra1 scaffold_276 ensembl transcript 2386 3819 . + . ID=Phyra85660;Parent=Phyra85660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_276 . CDS 2386 3819 . + 0 ID=Phyra85660;Parent=Phyra85660;rank=1 scaffold_276 . exon 2386 3819 . + . ID=Phyra85660.1;Parent=Phyra85660;constitutive=1;rank=1 scaffold_276 ensembl protein_coding_gene 5865 6437 . + . ID=Phyra85661;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_276000002;logic_name=jgi_phyra1 scaffold_276 ensembl transcript 5865 6437 . + . ID=Phyra85661;Parent=Phyra85661;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_276 . CDS 5865 6437 . + 0 ID=Phyra85661;Parent=Phyra85661;rank=1 scaffold_276 . exon 5865 6437 . + . ID=Phyra85661.1;Parent=Phyra85661;constitutive=1;rank=1 scaffold_276 . repeat_region 15513 15538 . ? . description=trf scaffold_276 ensembl protein_coding_gene 15152 17361 . - . ID=Phyra85662;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_276000003;logic_name=jgi_phyra1 scaffold_276 ensembl transcript 15152 17361 . - . ID=Phyra85662;Parent=Phyra85662;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_276 . CDS 15152 15490 . - 0 ID=Phyra85662;Parent=Phyra85662;rank=4 scaffold_276 . exon 15152 15490 . - . ID=Phyra85662.4;Parent=Phyra85662;constitutive=1;rank=4 scaffold_276 . CDS 15580 16320 . - 0 ID=Phyra85662;Parent=Phyra85662;rank=3 scaffold_276 . exon 15580 16320 . - . ID=Phyra85662.3;Parent=Phyra85662;constitutive=1;rank=3 scaffold_276 . CDS 16593 16657 . - 0 ID=Phyra85662;Parent=Phyra85662;rank=2 scaffold_276 . CDS 16731 17361 . - 0 ID=Phyra85662;Parent=Phyra85662;rank=1 scaffold_276 . biological_region 18552 18557 0.999 - . logic_name=eponine scaffold_276 . repeat_region 20138 21032 . ? . description=dust scaffold_276 . repeat_region 22132 23476 . ? . description=dust scaffold_276 . exon 16593 16657 . - . ID=Phyra85662.2;Parent=Phyra85662;constitutive=1;ensembl_phase=1;rank=2 scaffold_276 . exon 16731 17361 . - . ID=Phyra85662.1;Parent=Phyra85662;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_276 ensembl protein_coding_gene 18322 19803 . - . ID=Phyra85663;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_276000004;logic_name=jgi_phyra1 scaffold_276 ensembl transcript 18322 19803 . - . ID=Phyra85663;Parent=Phyra85663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_276 . CDS 18322 18867 . - 0 ID=Phyra85663;Parent=Phyra85663;rank=2 scaffold_276 . exon 18322 18867 . - . ID=Phyra85663.2;Parent=Phyra85663;constitutive=1;rank=2 scaffold_276 . CDS 19123 19803 . - 0 ID=Phyra85663;Parent=Phyra85663;rank=1 scaffold_276 . exon 19123 19803 . - . ID=Phyra85663.1;Parent=Phyra85663;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_277 1 24834 scaffold_277 . repeat_region 1329 2695 . ? . description=dust scaffold_277 . biological_region 2900 2900 0.999 - . logic_name=eponine scaffold_277 . biological_region 3145 3146 0.999 - . logic_name=eponine scaffold_277 . repeat_region 3817 5239 . ? . description=dust scaffold_277 ensembl protein_coding_gene 14744 17216 . - . ID=Phyra85664;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_277000001;logic_name=jgi_phyra1 scaffold_277 ensembl transcript 14744 17216 . - . ID=Phyra85664;Parent=Phyra85664;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_277 . CDS 14744 14800 . - 0 ID=Phyra85664;Parent=Phyra85664;rank=3 scaffold_277 . exon 14744 14800 . - . ID=Phyra85664.3;Parent=Phyra85664;constitutive=1;rank=3 scaffold_277 . CDS 14863 17096 . - 0 ID=Phyra85664;Parent=Phyra85664;rank=2 scaffold_277 . exon 14863 17096 . - . ID=Phyra85664.2;Parent=Phyra85664;constitutive=1;ensembl_phase=1;rank=2 scaffold_277 . CDS 17138 17216 . - 0 ID=Phyra85664;Parent=Phyra85664;rank=1 scaffold_277 . repeat_region 17643 21586 . ? . description=dust scaffold_277 . repeat_region 24610 24686 . ? . description=trf scaffold_277 . exon 17138 17216 . - . ID=Phyra85664.1;Parent=Phyra85664;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_277 ensembl protein_coding_gene 22793 23612 . - . ID=Phyra85665;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_277000002;logic_name=jgi_phyra1 scaffold_277 ensembl transcript 22793 23612 . - . ID=Phyra85665;Parent=Phyra85665;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_277 . CDS 22793 23354 . - 0 ID=Phyra85665;Parent=Phyra85665;rank=2 scaffold_277 . exon 22793 23354 . - . ID=Phyra85665.2;Parent=Phyra85665;constitutive=1;ensembl_phase=2;rank=2 scaffold_277 . CDS 23434 23612 . - 0 ID=Phyra85665;Parent=Phyra85665;rank=1 scaffold_277 . exon 23434 23612 . - . ID=Phyra85665.1;Parent=Phyra85665;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_274 1 24967 scaffold_274 . repeat_region 1493 2591 . ? . description=dust scaffold_274 . repeat_region 4006 5147 . ? . description=dust scaffold_274 . biological_region 5421 5425 0.999 - . logic_name=eponine scaffold_274 . repeat_region 5960 6948 . - . description=GypsyPi-1c_I-int scaffold_274 . repeat_region 6970 7844 . ? . description=dust scaffold_274 . biological_region 8044 8044 0.999 - . logic_name=eponine scaffold_274 . repeat_region 8270 8836 . - . description=GypsyPi-1c_I-int scaffold_274 ensembl protein_coding_gene 154 1230 . + . ID=Phyra85655;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_274000001;logic_name=jgi_phyra1 scaffold_274 ensembl transcript 154 1230 . + . ID=Phyra85655;Parent=Phyra85655;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_274 . CDS 154 1230 . + 0 ID=Phyra85655;Parent=Phyra85655;rank=1 scaffold_274 . exon 154 1230 . + . ID=Phyra85655.1;Parent=Phyra85655;constitutive=1;rank=1 scaffold_274 . repeat_region 12588 12714 . ? . description=trf scaffold_274 . repeat_region 12734 12777 . ? . description=trf scaffold_274 . repeat_region 12734 12792 . ? . description=trf scaffold_274 . repeat_region 16149 16191 . ? . description=trf scaffold_274 ensembl protein_coding_gene 8795 9817 . - . ID=Phyra85656;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_274000002;logic_name=jgi_phyra1 scaffold_274 ensembl transcript 8795 9817 . - . ID=Phyra85656;Parent=Phyra85656;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_274 . CDS 8795 9817 . - 0 ID=Phyra85656;Parent=Phyra85656;rank=1 scaffold_274 . exon 8795 9817 . - . ID=Phyra85656.1;Parent=Phyra85656;constitutive=1;rank=1 scaffold_274 . repeat_region 18660 18667 . ? . description=dust scaffold_274 . biological_region 19118 19123 0.999 - . logic_name=eponine scaffold_274 . repeat_region 19365 21251 . ? . description=dust scaffold_274 . repeat_region 21357 22664 . - . description=GypsyPi-1c_I-int scaffold_274 . biological_region 22513 22513 0.999 - . logic_name=eponine scaffold_274 . repeat_region 22874 23610 . ? . description=dust scaffold_274 . biological_region 24669 24675 0.999 - . logic_name=eponine scaffold_274 ensembl protein_coding_gene 21757 22859 . - . ID=Phyra85657;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_274000003;logic_name=jgi_phyra1 scaffold_274 ensembl transcript 21757 22859 . - . ID=Phyra85657;Parent=Phyra85657;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_274 . CDS 21757 22620 . - 0 ID=Phyra85657;Parent=Phyra85657;rank=2 scaffold_274 . exon 21757 22620 . - . ID=Phyra85657.2;Parent=Phyra85657;constitutive=1;rank=2 scaffold_274 . CDS 22683 22859 . - 0 ID=Phyra85657;Parent=Phyra85657;rank=1 scaffold_274 . exon 22683 22859 . - . ID=Phyra85657.1;Parent=Phyra85657;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_271 1 25029 scaffold_271 . biological_region 5718 5721 0.999 + . logic_name=eponine scaffold_271 . biological_region 5769 5773 0.999 - . logic_name=eponine scaffold_271 . biological_region 5932 5939 0.999 + . logic_name=eponine scaffold_271 . biological_region 7011 7013 0.999 + . logic_name=eponine scaffold_271 . biological_region 7247 7247 0.999 + . logic_name=eponine scaffold_271 . biological_region 7313 7313 0.999 - . logic_name=eponine scaffold_271 . biological_region 7870 7873 0.999 - . logic_name=eponine scaffold_271 . biological_region 7946 7949 0.999 - . logic_name=eponine scaffold_271 ensembl snRNA_gene 6408 6592 . - . ID=EPrPRAG00000000156;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_271 ensembl snRNA 6408 6592 . - . ID=EPrPRAT00000000156;Parent=EPrPRAG00000000156;biotype=snRNA;logic_name=ncrna_eg scaffold_271 . exon 6408 6592 . - . ID=EPrPRAE00000000156;Parent=EPrPRAT00000000156;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_271 ensembl protein_coding_gene 2967 3671 . + . ID=Phyra72357;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_271000001;logic_name=jgi_phyra1 scaffold_271 ensembl transcript 2967 3671 . + . ID=Phyra72357;Parent=Phyra72357;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_271 . CDS 2967 3671 . + 0 ID=Phyra72357;Parent=Phyra72357;rank=1 scaffold_271 . exon 2967 3671 . + . ID=Phyra72357.1;Parent=Phyra72357;constitutive=1;rank=1 scaffold_271 ensembl protein_coding_gene 5485 6084 . - . ID=Phyra85645;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_271000002;logic_name=jgi_phyra1 scaffold_271 ensembl transcript 5485 6084 . - . ID=Phyra85645;Parent=Phyra85645;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_271 . CDS 5485 6084 . - 0 ID=Phyra85645;Parent=Phyra85645;rank=1 scaffold_271 . exon 5485 6084 . - . ID=Phyra85645.1;Parent=Phyra85645;constitutive=1;rank=1 scaffold_271 ensembl protein_coding_gene 6748 12889 . - . ID=Phyra85646;biotype=protein_coding;description=Reverse transcriptase [Source:UniProtKB/TrEMBL%3BAcc:Q0Q535];external_name=fgenesh1_pg.C_scaffold_271000003;logic_name=jgi_phyra1 scaffold_271 ensembl transcript 6748 12889 . - . ID=Phyra85646;Parent=Phyra85646;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_271 . CDS 6748 7377 . - 0 ID=Phyra85646;Parent=Phyra85646;rank=7 scaffold_271 . exon 6748 7377 . - . ID=Phyra85646.7;Parent=Phyra85646;constitutive=1;rank=7 scaffold_271 . CDS 7442 8129 . - 0 ID=Phyra85646;Parent=Phyra85646;rank=6 scaffold_271 . exon 7442 8129 . - . ID=Phyra85646.6;Parent=Phyra85646;constitutive=1;ensembl_phase=2;rank=6 scaffold_271 . CDS 8172 8422 . - 0 ID=Phyra85646;Parent=Phyra85646;rank=5 scaffold_271 . exon 8172 8422 . - . ID=Phyra85646.5;Parent=Phyra85646;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_271 . CDS 8444 10758 . - 0 ID=Phyra85646;Parent=Phyra85646;rank=4 scaffold_271 . CDS 10816 11204 . - 0 ID=Phyra85646;Parent=Phyra85646;rank=3 scaffold_271 . CDS 11233 11546 . - 0 ID=Phyra85646;Parent=Phyra85646;rank=2 scaffold_271 . CDS 11768 12889 . - 0 ID=Phyra85646;Parent=Phyra85646;rank=1 scaffold_271 . repeat_region 11020 11068 . ? . description=dust scaffold_271 . repeat_region 11666 11715 . ? . description=dust scaffold_271 . repeat_region 12943 12992 . ? . description=dust scaffold_271 . repeat_region 16260 16310 . ? . description=trf scaffold_271 ensembl snRNA_gene 13404 13548 . - . ID=EPrPRAG00000000040;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_271 ensembl snRNA 13404 13548 . - . ID=EPrPRAT00000000040;Parent=EPrPRAG00000000040;biotype=snRNA;logic_name=ncrna_eg scaffold_271 ensembl snRNA_gene 12986 13067 . - . ID=EPrPRAG00000000115;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_271 ensembl snRNA 12986 13067 . - . ID=EPrPRAT00000000115;Parent=EPrPRAG00000000115;biotype=snRNA;logic_name=ncrna_eg scaffold_271 . exon 13404 13548 . - . ID=EPrPRAE00000000040;Parent=EPrPRAT00000000040;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_271 . exon 12986 13067 . - . ID=EPrPRAE00000000115;Parent=EPrPRAT00000000115;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_271 . exon 8444 10758 . - . ID=Phyra85646.4;Parent=Phyra85646;constitutive=1;ensembl_phase=1;rank=4 scaffold_271 . exon 10816 11204 . - . ID=Phyra85646.3;Parent=Phyra85646;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_271 . exon 11233 11546 . - . ID=Phyra85646.2;Parent=Phyra85646;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_271 . exon 11768 12889 . - . ID=Phyra85646.1;Parent=Phyra85646;constitutive=1;rank=1 scaffold_271 ensembl protein_coding_gene 13701 19144 . - . ID=Phyra85647;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_271000004;logic_name=jgi_phyra1 scaffold_271 ensembl transcript 13701 19144 . - . ID=Phyra85647;Parent=Phyra85647;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_271 . CDS 13701 18830 . - 0 ID=Phyra85647;Parent=Phyra85647;rank=2 scaffold_271 . exon 13701 18830 . - . ID=Phyra85647.2;Parent=Phyra85647;constitutive=1;rank=2 scaffold_271 . CDS 19109 19144 . - 0 ID=Phyra85647;Parent=Phyra85647;rank=1 scaffold_271 . biological_region 16946 16949 0.999 + . logic_name=eponine scaffold_271 . biological_region 17455 17457 0.999 + . logic_name=eponine scaffold_271 . biological_region 17770 17770 0.999 + . logic_name=eponine scaffold_271 . biological_region 17839 17839 0.999 - . logic_name=eponine scaffold_271 . biological_region 18328 18332 0.999 + . logic_name=eponine scaffold_271 . biological_region 18442 18444 0.999 + . logic_name=eponine scaffold_271 . biological_region 18739 18739 0.999 - . logic_name=eponine scaffold_271 . biological_region 20233 20237 0.999 + . logic_name=eponine scaffold_271 . biological_region 20331 20333 0.999 - . logic_name=eponine scaffold_271 . biological_region 21488 21495 0.999 + . logic_name=eponine scaffold_271 . biological_region 21560 21564 0.999 + . logic_name=eponine scaffold_271 . biological_region 22421 22424 0.999 + . logic_name=eponine scaffold_271 . biological_region 23045 23047 0.999 + . logic_name=eponine scaffold_271 . biological_region 23490 23492 0.999 + . logic_name=eponine scaffold_271 . biological_region 24946 24950 0.999 - . logic_name=eponine scaffold_271 ensembl snRNA_gene 18862 19080 . - . ID=EPrPRAG00000000023;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_271 ensembl snRNA 18862 19080 . - . ID=EPrPRAT00000000023;Parent=EPrPRAG00000000023;biotype=snRNA;logic_name=ncrna_eg scaffold_271 ensembl snRNA_gene 19399 19589 . - . ID=EPrPRAG00000000070;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_271 ensembl snRNA 19399 19589 . - . ID=EPrPRAT00000000070;Parent=EPrPRAG00000000070;biotype=snRNA;logic_name=ncrna_eg scaffold_271 . exon 18862 19080 . - . ID=EPrPRAE00000000023;Parent=EPrPRAT00000000023;constitutive=1;rank=1 scaffold_271 . exon 19399 19589 . - . ID=EPrPRAE00000000070;Parent=EPrPRAT00000000070;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_271 . exon 19109 19144 . - . ID=Phyra85647.1;Parent=Phyra85647;constitutive=1;rank=1 scaffold_271 ensembl protein_coding_gene 19780 24986 . - . ID=Phyra85648;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_271000005;logic_name=jgi_phyra1 scaffold_271 ensembl transcript 19780 24986 . - . ID=Phyra85648;Parent=Phyra85648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_271 . CDS 19780 20589 . - 0 ID=Phyra85648;Parent=Phyra85648;rank=2 scaffold_271 . exon 19780 20589 . - . ID=Phyra85648.2;Parent=Phyra85648;constitutive=1;rank=2 scaffold_271 . CDS 20847 24986 . - 0 ID=Phyra85648;Parent=Phyra85648;rank=1 scaffold_271 . exon 20847 24986 . - . ID=Phyra85648.1;Parent=Phyra85648;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_273 1 25200 scaffold_273 . repeat_region 1263 3561 . ? . description=dust scaffold_273 . biological_region 4452 4454 0.999 + . logic_name=eponine scaffold_273 . repeat_region 4466 5225 . - . description=Polinton-1_PI scaffold_273 . biological_region 6182 6182 0.999 + . logic_name=eponine scaffold_273 . repeat_region 7322 7329 . ? . description=dust scaffold_273 . repeat_region 7334 9233 . - . description=Polinton-1_PI scaffold_273 . repeat_region 7558 7565 . ? . description=dust scaffold_273 . repeat_region 7683 7691 . ? . description=dust scaffold_273 . repeat_region 8155 8162 . ? . description=dust scaffold_273 ensembl protein_coding_gene 646 1194 . - . ID=Phyra85653;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_273000001;logic_name=jgi_phyra1 scaffold_273 ensembl transcript 646 1194 . - . ID=Phyra85653;Parent=Phyra85653;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_273 . CDS 646 1194 . - 0 ID=Phyra85653;Parent=Phyra85653;rank=1 scaffold_273 . exon 646 1194 . - . ID=Phyra85653.1;Parent=Phyra85653;constitutive=1;rank=1 scaffold_273 ensembl protein_coding_gene 13398 17281 . + . ID=Phyra85654;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_273000002;logic_name=jgi_phyra1 scaffold_273 ensembl transcript 13398 17281 . + . ID=Phyra85654;Parent=Phyra85654;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_273 . CDS 13398 14316 . + 0 ID=Phyra85654;Parent=Phyra85654;rank=1 scaffold_273 . exon 13398 14316 . + . ID=Phyra85654.1;Parent=Phyra85654;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_273 . CDS 14447 14472 . + 0 ID=Phyra85654;Parent=Phyra85654;rank=2 scaffold_273 . exon 14447 14472 . + . ID=Phyra85654.2;Parent=Phyra85654;constitutive=1;ensembl_phase=1;rank=2 scaffold_273 . CDS 15082 15178 . + 0 ID=Phyra85654;Parent=Phyra85654;rank=3 scaffold_273 . exon 15082 15178 . + . ID=Phyra85654.3;Parent=Phyra85654;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_273 . CDS 15471 15799 . + 0 ID=Phyra85654;Parent=Phyra85654;rank=4 scaffold_273 . exon 15471 15799 . + . ID=Phyra85654.4;Parent=Phyra85654;constitutive=1;ensembl_phase=1;rank=4 scaffold_273 . CDS 16017 16134 . + 0 ID=Phyra85654;Parent=Phyra85654;rank=5 scaffold_273 . exon 16017 16134 . + . ID=Phyra85654.5;Parent=Phyra85654;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_273 . CDS 16184 16515 . + 0 ID=Phyra85654;Parent=Phyra85654;rank=6 scaffold_273 . exon 16184 16515 . + . ID=Phyra85654.6;Parent=Phyra85654;constitutive=1;ensembl_phase=1;rank=6 scaffold_273 . CDS 16601 17281 . + 0 ID=Phyra85654;Parent=Phyra85654;rank=7 scaffold_273 . exon 16601 17281 . + . ID=Phyra85654.7;Parent=Phyra85654;constitutive=1;rank=7 scaffold_273 . repeat_region 18388 24028 . ? . description=dust scaffold_273 . biological_region 24331 24332 0.999 + . logic_name=eponine scaffold_273 . repeat_region 24425 24472 . ? . description=dust scaffold_273 . repeat_region 24443 24470 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_270 1 25472 scaffold_270 . biological_region 1356 1357 0.999 + . logic_name=eponine scaffold_270 . biological_region 1432 1434 0.999 - . logic_name=eponine scaffold_270 . repeat_region 1667 1674 . ? . description=dust scaffold_270 . repeat_region 1919 7159 . ? . description=dust scaffold_270 ensembl protein_coding_gene 540 1278 . - . ID=Phyra85642;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_270000001;logic_name=jgi_phyra1 scaffold_270 ensembl transcript 540 1278 . - . ID=Phyra85642;Parent=Phyra85642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_270 . CDS 540 551 . - 0 ID=Phyra85642;Parent=Phyra85642;rank=2 scaffold_270 . exon 540 551 . - . ID=Phyra85642.2;Parent=Phyra85642;constitutive=1;rank=2 scaffold_270 . CDS 610 1278 . - 0 ID=Phyra85642;Parent=Phyra85642;rank=1 scaffold_270 . exon 610 1278 . - . ID=Phyra85642.1;Parent=Phyra85642;constitutive=1;rank=1 scaffold_270 ensembl protein_coding_gene 12478 12801 . - . ID=Phyra46194;biotype=protein_coding;external_name=gwEuk.270.4.1;logic_name=jgi_phyra1 scaffold_270 ensembl transcript 12478 12801 . - . ID=Phyra46194;Parent=Phyra46194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_270 . CDS 12478 12801 . - 0 ID=Phyra46194;Parent=Phyra46194;rank=1 scaffold_270 . exon 12478 12801 . - . ID=Phyra46194.1;Parent=Phyra46194;constitutive=1;rank=1 scaffold_270 . repeat_region 17452 17464 . ? . description=dust scaffold_270 . biological_region 19241 19244 0.999 + . logic_name=eponine scaffold_270 . repeat_region 20237 20292 . ? . description=dust scaffold_270 . repeat_region 20883 20912 . ? . description=trf scaffold_270 . repeat_region 20912 20967 . ? . description=trf scaffold_270 . repeat_region 22123 23541 . ? . description=dust scaffold_270 . repeat_region 23882 23901 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_272 1 25554 scaffold_272 . repeat_region 1721 1728 . ? . description=dust scaffold_272 . repeat_region 1808 1836 . - . description=GypsyPi-1c_I-int scaffold_272 . repeat_region 1996 2189 . - . description=GypsyPi-1c_I-int scaffold_272 . repeat_region 2441 2749 . - . description=GypsyPi-1c_I-int scaffold_272 . repeat_region 2750 3207 . ? . description=dust scaffold_272 . repeat_region 3213 4331 . - . description=GypsyPi-1c_I-int scaffold_272 . biological_region 3475 3480 0.999 - . logic_name=eponine scaffold_272 . repeat_region 4332 4637 . - . description=GypsyPi-1c_LTR scaffold_272 . repeat_region 5205 5213 . ? . description=dust scaffold_272 . repeat_region 5217 5266 . ? . description=dust scaffold_272 . repeat_region 5350 5365 . ? . description=dust scaffold_272 . repeat_region 5612 5918 . + . description=GypsyPi-1c_I-int scaffold_272 . repeat_region 6067 6278 . + . description=GypsyPi-1c_I-int scaffold_272 . repeat_region 6524 6686 . + . description=GypsyPi-1c_I-int scaffold_272 . biological_region 6598 6601 0.999 - . logic_name=eponine scaffold_272 . biological_region 6657 6670 0.999 - . logic_name=eponine scaffold_272 . repeat_region 8147 8155 . ? . description=dust scaffold_272 ensembl protein_coding_gene 6016 6558 . - . ID=Phyra85649;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_272000001;logic_name=jgi_phyra1 scaffold_272 ensembl transcript 6016 6558 . - . ID=Phyra85649;Parent=Phyra85649;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_272 . CDS 6016 6558 . - 0 ID=Phyra85649;Parent=Phyra85649;rank=1 scaffold_272 . exon 6016 6558 . - . ID=Phyra85649.1;Parent=Phyra85649;constitutive=1;rank=1 scaffold_272 ensembl protein_coding_gene 8365 8767 . + . ID=Phyra85650;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_272000002;logic_name=jgi_phyra1 scaffold_272 ensembl transcript 8365 8767 . + . ID=Phyra85650;Parent=Phyra85650;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_272 . CDS 8365 8664 . + 0 ID=Phyra85650;Parent=Phyra85650;rank=1 scaffold_272 . exon 8365 8664 . + . ID=Phyra85650.1;Parent=Phyra85650;constitutive=1;rank=1 scaffold_272 . CDS 8687 8767 . + 0 ID=Phyra85650;Parent=Phyra85650;rank=2 scaffold_272 . repeat_region 13588 13672 . ? . description=trf scaffold_272 . exon 8687 8767 . + . ID=Phyra85650.2;Parent=Phyra85650;constitutive=1;rank=2 scaffold_272 ensembl protein_coding_gene 15114 18242 . - . ID=Phyra85651;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_272000003;logic_name=jgi_phyra1 scaffold_272 ensembl transcript 15114 18242 . - . ID=Phyra85651;Parent=Phyra85651;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_272 . CDS 15114 15127 . - 0 ID=Phyra85651;Parent=Phyra85651;rank=5 scaffold_272 . exon 15114 15127 . - . ID=Phyra85651.5;Parent=Phyra85651;constitutive=1;ensembl_phase=1;rank=5 scaffold_272 . CDS 15247 15585 . - 0 ID=Phyra85651;Parent=Phyra85651;rank=4 scaffold_272 . exon 15247 15585 . - . ID=Phyra85651.4;Parent=Phyra85651;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_272 . CDS 15723 16273 . - 0 ID=Phyra85651;Parent=Phyra85651;rank=3 scaffold_272 . exon 15723 16273 . - . ID=Phyra85651.3;Parent=Phyra85651;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_272 . CDS 16423 17297 . - 0 ID=Phyra85651;Parent=Phyra85651;rank=2 scaffold_272 . exon 16423 17297 . - . ID=Phyra85651.2;Parent=Phyra85651;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_272 . CDS 17595 18242 . - 0 ID=Phyra85651;Parent=Phyra85651;rank=1 scaffold_272 . repeat_region 22496 22531 . ? . description=dust scaffold_272 ensembl protein_coding_gene 18569 18922 . - . ID=Phyra72358;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_272000001;logic_name=jgi_phyra1 scaffold_272 ensembl transcript 18569 18922 . - . ID=Phyra72358;Parent=Phyra72358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_272 . CDS 18569 18922 . - 0 ID=Phyra72358;Parent=Phyra72358;rank=1 scaffold_272 . exon 18569 18922 . - . ID=Phyra72358.1;Parent=Phyra72358;constitutive=1;rank=1 scaffold_272 . exon 17595 18242 . - . ID=Phyra85651.1;Parent=Phyra85651;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_269 1 27196 scaffold_269 . biological_region 1112 1114 0.999 + . logic_name=eponine scaffold_269 . biological_region 1139 1140 0.999 + . logic_name=eponine scaffold_269 . repeat_region 1874 1883 . ? . description=dust scaffold_269 . repeat_region 2374 2423 . ? . description=dust scaffold_269 . repeat_region 3608 3620 . ? . description=dust scaffold_269 . repeat_region 4835 4843 . ? . description=dust scaffold_269 . biological_region 5728 5732 0.999 - . logic_name=eponine scaffold_269 . repeat_region 6203 6215 . ? . description=dust scaffold_269 . repeat_region 7112 7161 . ? . description=dust scaffold_269 . repeat_region 7332 7344 . ? . description=dust scaffold_269 . biological_region 8552 8553 0.999 - . logic_name=eponine scaffold_269 ensembl protein_coding_gene 6235 6705 . - . ID=Phyra85639;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_269000001;logic_name=jgi_phyra1 scaffold_269 ensembl transcript 6235 6705 . - . ID=Phyra85639;Parent=Phyra85639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_269 . CDS 6235 6705 . - 0 ID=Phyra85639;Parent=Phyra85639;rank=1 scaffold_269 . exon 6235 6705 . - . ID=Phyra85639.1;Parent=Phyra85639;constitutive=1;rank=1 scaffold_269 . repeat_region 14603 14663 . ? . description=trf scaffold_269 . repeat_region 14605 14655 . ? . description=trf scaffold_269 ensembl protein_coding_gene 11028 12032 . + . ID=Phyra72356;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_269000001;logic_name=jgi_phyra1 scaffold_269 ensembl transcript 11028 12032 . + . ID=Phyra72356;Parent=Phyra72356;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_269 . CDS 11028 12032 . + 0 ID=Phyra72356;Parent=Phyra72356;rank=1 scaffold_269 . exon 11028 12032 . + . ID=Phyra72356.1;Parent=Phyra72356;constitutive=1;rank=1 scaffold_269 . repeat_region 20965 21023 . ? . description=dust scaffold_269 . repeat_region 23252 26080 . ? . description=dust scaffold_269 . biological_region 26753 26754 0.999 - . logic_name=eponine scaffold_269 ensembl protein_coding_gene 26276 27155 . + . ID=Phyra85641;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_269000003;logic_name=jgi_phyra1 scaffold_269 ensembl transcript 26276 27155 . + . ID=Phyra85641;Parent=Phyra85641;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_269 . CDS 26276 27155 . + 0 ID=Phyra85641;Parent=Phyra85641;rank=1 scaffold_269 . exon 26276 27155 . + . ID=Phyra85641.1;Parent=Phyra85641;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_268 1 28476 scaffold_268 . repeat_region 1555 5510 . ? . description=dust scaffold_268 . repeat_region 6501 6550 . ? . description=dust scaffold_268 . biological_region 7959 7960 0.999 - . logic_name=eponine scaffold_268 . biological_region 8067 8071 0.999 + . logic_name=eponine scaffold_268 . repeat_region 9257 10120 . ? . description=dust scaffold_268 ensembl protein_coding_gene 7571 8302 . + . ID=Phyra85636;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_268000001;logic_name=jgi_phyra1 scaffold_268 ensembl transcript 7571 8302 . + . ID=Phyra85636;Parent=Phyra85636;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_268 . CDS 7571 8302 . + 0 ID=Phyra85636;Parent=Phyra85636;rank=1 scaffold_268 . exon 7571 8302 . + . ID=Phyra85636.1;Parent=Phyra85636;constitutive=1;rank=1 scaffold_268 . repeat_region 15238 15368 . ? . description=trf scaffold_268 ensembl protein_coding_gene 10960 13359 . - . ID=Phyra72355;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_268000001;logic_name=jgi_phyra1 scaffold_268 ensembl transcript 10960 13359 . - . ID=Phyra72355;Parent=Phyra72355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_268 . CDS 10960 13359 . - 0 ID=Phyra72355;Parent=Phyra72355;rank=1 scaffold_268 . exon 10960 13359 . - . ID=Phyra72355.1;Parent=Phyra72355;constitutive=1;rank=1 scaffold_268 ensembl protein_coding_gene 14074 15459 . - . ID=Phyra85638;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_268000003;logic_name=jgi_phyra1 scaffold_268 ensembl transcript 14074 15459 . - . ID=Phyra85638;Parent=Phyra85638;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_268 . CDS 14074 15459 . - 0 ID=Phyra85638;Parent=Phyra85638;rank=1 scaffold_268 . exon 14074 15459 . - . ID=Phyra85638.1;Parent=Phyra85638;constitutive=1;rank=1 scaffold_268 . repeat_region 21830 21840 . ? . description=dust scaffold_268 . biological_region 22287 22291 0.999 + . logic_name=eponine scaffold_268 . repeat_region 24455 24468 . ? . description=dust scaffold_268 . repeat_region 25053 27345 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_267 1 29552 scaffold_267 . repeat_region 134 212 . ? . description=dust scaffold_267 . repeat_region 149 212 . ? . description=trf scaffold_267 . repeat_region 149 212 . ? . description=trf scaffold_267 . repeat_region 425 469 . ? . description=dust scaffold_267 . repeat_region 436 471 . ? . description=trf scaffold_267 . repeat_region 482 519 . ? . description=trf scaffold_267 . repeat_region 497 547 . ? . description=dust scaffold_267 . repeat_region 1068 2189 . ? . description=dust scaffold_267 . repeat_region 2426 2470 . ? . description=dust scaffold_267 . repeat_region 2437 2472 . ? . description=trf scaffold_267 . repeat_region 2483 2520 . ? . description=trf scaffold_267 . repeat_region 2498 2545 . ? . description=dust scaffold_267 . repeat_region 3620 3669 . ? . description=dust scaffold_267 ensembl protein_coding_gene 245 550 . + . ID=Phyra85627;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_267000001;logic_name=jgi_phyra1 scaffold_267 ensembl transcript 245 550 . + . ID=Phyra85627;Parent=Phyra85627;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_267 . CDS 245 550 . + 0 ID=Phyra85627;Parent=Phyra85627;rank=1 scaffold_267 . exon 245 550 . + . ID=Phyra85627.1;Parent=Phyra85627;constitutive=1;rank=1 scaffold_267 ensembl protein_coding_gene 2246 2551 . + . ID=Phyra85628;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_267000002;logic_name=jgi_phyra1 scaffold_267 ensembl transcript 2246 2551 . + . ID=Phyra85628;Parent=Phyra85628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_267 . CDS 2246 2551 . + 0 ID=Phyra85628;Parent=Phyra85628;rank=1 scaffold_267 . exon 2246 2551 . + . ID=Phyra85628.1;Parent=Phyra85628;constitutive=1;rank=1 scaffold_267 ensembl protein_coding_gene 3673 5168 . - . ID=Phyra85629;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_267000003;logic_name=jgi_phyra1 scaffold_267 ensembl transcript 3673 5168 . - . ID=Phyra85629;Parent=Phyra85629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_267 . CDS 3673 4382 . - 0 ID=Phyra85629;Parent=Phyra85629;rank=3 scaffold_267 . exon 3673 4382 . - . ID=Phyra85629.3;Parent=Phyra85629;constitutive=1;ensembl_phase=1;rank=3 scaffold_267 . CDS 4498 4892 . - 0 ID=Phyra85629;Parent=Phyra85629;rank=2 scaffold_267 . exon 4498 4892 . - . ID=Phyra85629.2;Parent=Phyra85629;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_267 . CDS 5137 5168 . - 0 ID=Phyra85629;Parent=Phyra85629;rank=1 scaffold_267 . exon 5137 5168 . - . ID=Phyra85629.1;Parent=Phyra85629;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_267 ensembl protein_coding_gene 6293 7094 . + . ID=Phyra85630;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_267000004;logic_name=jgi_phyra1 scaffold_267 ensembl transcript 6293 7094 . + . ID=Phyra85630;Parent=Phyra85630;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_267 . CDS 6293 6948 . + 0 ID=Phyra85630;Parent=Phyra85630;rank=1 scaffold_267 . exon 6293 6948 . + . ID=Phyra85630.1;Parent=Phyra85630;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_267 . CDS 7016 7094 . + 0 ID=Phyra85630;Parent=Phyra85630;rank=2 scaffold_267 . exon 7016 7094 . + . ID=Phyra85630.2;Parent=Phyra85630;constitutive=1;ensembl_phase=2;rank=2 scaffold_267 ensembl protein_coding_gene 9264 9950 . + . ID=Phyra85631;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_267000005;logic_name=jgi_phyra1 scaffold_267 ensembl transcript 9264 9950 . + . ID=Phyra85631;Parent=Phyra85631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_267 . CDS 9264 9950 . + 0 ID=Phyra85631;Parent=Phyra85631;rank=1 scaffold_267 . exon 9264 9950 . + . ID=Phyra85631.1;Parent=Phyra85631;constitutive=1;rank=1 scaffold_267 . biological_region 11607 11608 0.999 + . logic_name=eponine scaffold_267 . biological_region 11710 11714 0.999 + . logic_name=eponine scaffold_267 . biological_region 13792 13793 0.999 - . logic_name=eponine scaffold_267 . biological_region 15241 15245 0.999 - . logic_name=eponine scaffold_267 . biological_region 15347 15348 0.999 - . logic_name=eponine scaffold_267 ensembl protein_coding_gene 10378 11982 . - . ID=Phyra85632;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_267000006;logic_name=jgi_phyra1 scaffold_267 ensembl transcript 10378 11982 . - . ID=Phyra85632;Parent=Phyra85632;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_267 . CDS 10378 11982 . - 0 ID=Phyra85632;Parent=Phyra85632;rank=1 scaffold_267 . exon 10378 11982 . - . ID=Phyra85632.1;Parent=Phyra85632;constitutive=1;rank=1 scaffold_267 ensembl protein_coding_gene 12835 14433 . + . ID=Phyra85633;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_267000007;logic_name=jgi_phyra1 scaffold_267 ensembl transcript 12835 14433 . + . ID=Phyra85633;Parent=Phyra85633;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_267 . CDS 12835 14433 . + 0 ID=Phyra85633;Parent=Phyra85633;rank=1 scaffold_267 . exon 12835 14433 . + . ID=Phyra85633.1;Parent=Phyra85633;constitutive=1;rank=1 scaffold_267 ensembl protein_coding_gene 14972 16576 . + . ID=Phyra85634;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_267000008;logic_name=jgi_phyra1 scaffold_267 ensembl transcript 14972 16576 . + . ID=Phyra85634;Parent=Phyra85634;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_267 . CDS 14972 16576 . + 0 ID=Phyra85634;Parent=Phyra85634;rank=1 scaffold_267 . exon 14972 16576 . + . ID=Phyra85634.1;Parent=Phyra85634;constitutive=1;rank=1 scaffold_267 . repeat_region 17321 20847 . ? . description=dust scaffold_267 . repeat_region 25458 28220 . ? . description=dust scaffold_267 ensembl protein_coding_gene 21235 24204 . + . ID=Phyra85635;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_267000009;logic_name=jgi_phyra1 scaffold_267 ensembl transcript 21235 24204 . + . ID=Phyra85635;Parent=Phyra85635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_267 . CDS 21235 22071 . + 0 ID=Phyra85635;Parent=Phyra85635;rank=1 scaffold_267 . exon 21235 22071 . + . ID=Phyra85635.1;Parent=Phyra85635;constitutive=1;rank=1 scaffold_267 . CDS 22225 22260 . + 0 ID=Phyra85635;Parent=Phyra85635;rank=2 scaffold_267 . exon 22225 22260 . + . ID=Phyra85635.2;Parent=Phyra85635;constitutive=1;rank=2 scaffold_267 . CDS 22322 22423 . + 0 ID=Phyra85635;Parent=Phyra85635;rank=3 scaffold_267 . exon 22322 22423 . + . ID=Phyra85635.3;Parent=Phyra85635;constitutive=1;rank=3 scaffold_267 . CDS 22618 24204 . + 0 ID=Phyra85635;Parent=Phyra85635;rank=4 scaffold_267 . exon 22618 24204 . + . ID=Phyra85635.4;Parent=Phyra85635;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_208 1 31161 scaffold_208 ensembl protein_coding_gene 3978 4953 . - . ID=Phyra44308;biotype=protein_coding;external_name=gwEuk.208.2.1;logic_name=jgi_phyra1 scaffold_208 ensembl transcript 3978 4953 . - . ID=Phyra44308;Parent=Phyra44308;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_208 . CDS 3978 4160 . - 0 ID=Phyra44308;Parent=Phyra44308;rank=5 scaffold_208 . exon 3978 4160 . - . ID=Phyra44308.5;Parent=Phyra44308;constitutive=1;rank=5 scaffold_208 . CDS 4224 4565 . - 0 ID=Phyra44308;Parent=Phyra44308;rank=4 scaffold_208 . exon 4224 4565 . - . ID=Phyra44308.4;Parent=Phyra44308;constitutive=1;rank=4 scaffold_208 . CDS 4640 4713 . - 0 ID=Phyra44308;Parent=Phyra44308;rank=3 scaffold_208 . exon 4640 4713 . - . ID=Phyra44308.3;Parent=Phyra44308;constitutive=1;ensembl_phase=1;rank=3 scaffold_208 . CDS 4791 4852 . - 0 ID=Phyra44308;Parent=Phyra44308;rank=2 scaffold_208 . exon 4791 4852 . - . ID=Phyra44308.2;Parent=Phyra44308;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_208 . CDS 4913 4953 . - 0 ID=Phyra44308;Parent=Phyra44308;rank=1 scaffold_208 . exon 4913 4953 . - . ID=Phyra44308.1;Parent=Phyra44308;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_208 ensembl protein_coding_gene 2230 3067 . - . ID=Phyra85508;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_208000001;logic_name=jgi_phyra1 scaffold_208 ensembl transcript 2230 3067 . - . ID=Phyra85508;Parent=Phyra85508;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_208 . CDS 2230 2915 . - 0 ID=Phyra85508;Parent=Phyra85508;rank=2 scaffold_208 . exon 2230 2915 . - . ID=Phyra85508.2;Parent=Phyra85508;constitutive=1;ensembl_phase=1;rank=2 scaffold_208 . CDS 2980 3067 . - 0 ID=Phyra85508;Parent=Phyra85508;rank=1 scaffold_208 . exon 2980 3067 . - . ID=Phyra85508.1;Parent=Phyra85508;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_208 ensembl protein_coding_gene 6025 6483 . + . ID=Phyra85509;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_208000002;logic_name=jgi_phyra1 scaffold_208 ensembl transcript 6025 6483 . + . ID=Phyra85509;Parent=Phyra85509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_208 . CDS 6025 6483 . + 0 ID=Phyra85509;Parent=Phyra85509;rank=1 scaffold_208 . exon 6025 6483 . + . ID=Phyra85509.1;Parent=Phyra85509;constitutive=1;rank=1 scaffold_208 . biological_region 10288 10289 0.999 + . logic_name=eponine scaffold_208 . biological_region 10430 10432 0.999 + . logic_name=eponine scaffold_208 . biological_region 10434 10439 0.999 - . logic_name=eponine scaffold_208 . biological_region 10447 10453 0.999 + . logic_name=eponine scaffold_208 . biological_region 10503 10508 0.999 - . logic_name=eponine scaffold_208 . repeat_region 12460 12484 . ? . description=trf scaffold_208 . biological_region 13063 13065 0.999 - . logic_name=eponine scaffold_208 . repeat_region 13981 13993 . ? . description=dust scaffold_208 . biological_region 14555 14559 0.999 + . logic_name=eponine scaffold_208 . biological_region 14730 14732 0.999 - . logic_name=eponine scaffold_208 . repeat_region 14753 14760 . ? . description=dust scaffold_208 ensembl protein_coding_gene 8481 9605 . - . ID=Phyra85510;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_208000003;logic_name=jgi_phyra1 scaffold_208 ensembl transcript 8481 9605 . - . ID=Phyra85510;Parent=Phyra85510;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_208 . CDS 8481 8515 . - 0 ID=Phyra85510;Parent=Phyra85510;rank=2 scaffold_208 . exon 8481 8515 . - . ID=Phyra85510.2;Parent=Phyra85510;constitutive=1;ensembl_phase=1;rank=2 scaffold_208 . CDS 8660 9605 . - 0 ID=Phyra85510;Parent=Phyra85510;rank=1 scaffold_208 . exon 8660 9605 . - . ID=Phyra85510.1;Parent=Phyra85510;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_208 ensembl protein_coding_gene 10356 12311 . + . ID=Phyra85511;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_208000004;logic_name=jgi_phyra1 scaffold_208 ensembl transcript 10356 12311 . + . ID=Phyra85511;Parent=Phyra85511;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_208 . CDS 10356 12311 . + 0 ID=Phyra85511;Parent=Phyra85511;rank=1 scaffold_208 . exon 10356 12311 . + . ID=Phyra85511.1;Parent=Phyra85511;constitutive=1;rank=1 scaffold_208 ensembl protein_coding_gene 12597 13739 . + . ID=Phyra85512;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_208000005;logic_name=jgi_phyra1 scaffold_208 ensembl transcript 12597 13739 . + . ID=Phyra85512;Parent=Phyra85512;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_208 . CDS 12597 13739 . + 0 ID=Phyra85512;Parent=Phyra85512;rank=1 scaffold_208 . exon 12597 13739 . + . ID=Phyra85512.1;Parent=Phyra85512;constitutive=1;rank=1 scaffold_208 . repeat_region 16853 17104 . + . description=GypsyPi-1c_I-int scaffold_208 . repeat_region 17719 17817 . + . description=GypsyPi-1c_I-int scaffold_208 . repeat_region 18403 20324 . + . description=GypsyPi-1c_I-int scaffold_208 . repeat_region 22995 23382 . + . description=GypsyPi-1c_I-int scaffold_208 ensembl protein_coding_gene 20192 23193 . + . ID=Phyra44309;biotype=protein_coding;external_name=gwEuk.208.3.1;logic_name=jgi_phyra1 scaffold_208 ensembl transcript 20192 23193 . + . ID=Phyra44309;Parent=Phyra44309;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_208 . CDS 20192 20290 . + 0 ID=Phyra44309;Parent=Phyra44309;rank=1 scaffold_208 . exon 20192 20290 . + . ID=Phyra44309.1;Parent=Phyra44309;constitutive=1;rank=1 scaffold_208 . CDS 22987 23193 . + 0 ID=Phyra44309;Parent=Phyra44309;rank=2 scaffold_208 . exon 22987 23193 . + . ID=Phyra44309.2;Parent=Phyra44309;constitutive=1;rank=2 scaffold_208 ensembl protein_coding_gene 16360 19072 . + . ID=Phyra85513;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_208000006;logic_name=jgi_phyra1 scaffold_208 ensembl transcript 16360 19072 . + . ID=Phyra85513;Parent=Phyra85513;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_208 . CDS 16360 17241 . + 0 ID=Phyra85513;Parent=Phyra85513;rank=1 scaffold_208 . exon 16360 17241 . + . ID=Phyra85513.1;Parent=Phyra85513;constitutive=1;rank=1 scaffold_208 . CDS 17364 17507 . + 0 ID=Phyra85513;Parent=Phyra85513;rank=2 scaffold_208 . exon 17364 17507 . + . ID=Phyra85513.2;Parent=Phyra85513;constitutive=1;rank=2 scaffold_208 . CDS 17583 17825 . + 0 ID=Phyra85513;Parent=Phyra85513;rank=3 scaffold_208 . exon 17583 17825 . + . ID=Phyra85513.3;Parent=Phyra85513;constitutive=1;rank=3 scaffold_208 . CDS 18184 18840 . + 0 ID=Phyra85513;Parent=Phyra85513;rank=4 scaffold_208 . exon 18184 18840 . + . ID=Phyra85513.4;Parent=Phyra85513;constitutive=1;rank=4 scaffold_208 . CDS 18989 19072 . + 0 ID=Phyra85513;Parent=Phyra85513;rank=5 scaffold_208 . exon 18989 19072 . + . ID=Phyra85513.5;Parent=Phyra85513;constitutive=1;rank=5 scaffold_208 . biological_region 24856 24861 0.999 + . logic_name=eponine scaffold_208 . biological_region 24950 24951 0.999 - . logic_name=eponine scaffold_208 . biological_region 25041 25044 0.999 + . logic_name=eponine scaffold_208 . repeat_region 25577 26500 . ? . description=dust scaffold_208 ensembl protein_coding_gene 23930 25507 . - . ID=Phyra85514;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_208000007;logic_name=jgi_phyra1 scaffold_208 ensembl transcript 23930 25507 . - . ID=Phyra85514;Parent=Phyra85514;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_208 . CDS 23930 24123 . - 0 ID=Phyra85514;Parent=Phyra85514;rank=4 scaffold_208 . exon 23930 24123 . - . ID=Phyra85514.4;Parent=Phyra85514;constitutive=1;ensembl_phase=1;rank=4 scaffold_208 . CDS 24346 24543 . - 0 ID=Phyra85514;Parent=Phyra85514;rank=3 scaffold_208 . exon 24346 24543 . - . ID=Phyra85514.3;Parent=Phyra85514;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_208 . CDS 24568 25213 . - 0 ID=Phyra85514;Parent=Phyra85514;rank=2 scaffold_208 . exon 24568 25213 . - . ID=Phyra85514.2;Parent=Phyra85514;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_208 . CDS 25262 25507 . - 0 ID=Phyra85514;Parent=Phyra85514;rank=1 scaffold_208 . exon 25262 25507 . - . ID=Phyra85514.1;Parent=Phyra85514;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_266 1 32176 scaffold_266 . biological_region 1298 1301 0.999 - . logic_name=eponine scaffold_266 . repeat_region 1369 1397 . ? . description=trf scaffold_266 . biological_region 1402 1402 0.999 - . logic_name=eponine scaffold_266 . biological_region 1423 1427 0.999 - . logic_name=eponine scaffold_266 . biological_region 1842 1844 0.999 + . logic_name=eponine scaffold_266 . repeat_region 2054 2073 . ? . description=trf scaffold_266 . biological_region 2116 2118 0.999 - . logic_name=eponine scaffold_266 . biological_region 2172 2175 0.999 + . logic_name=eponine scaffold_266 . repeat_region 2667 2710 . ? . description=trf scaffold_266 . repeat_region 4347 4354 . ? . description=dust scaffold_266 . biological_region 6055 6057 0.999 + . logic_name=eponine scaffold_266 . biological_region 6058 6060 0.999 - . logic_name=eponine scaffold_266 . biological_region 7312 7313 0.999 - . logic_name=eponine scaffold_266 ensembl protein_coding_gene 1532 2185 . + . ID=Phyra85613;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_266000001;logic_name=jgi_phyra1 scaffold_266 ensembl transcript 1532 2185 . + . ID=Phyra85613;Parent=Phyra85613;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_266 . CDS 1532 2185 . + 0 ID=Phyra85613;Parent=Phyra85613;rank=1 scaffold_266 . exon 1532 2185 . + . ID=Phyra85613.1;Parent=Phyra85613;constitutive=1;rank=1 scaffold_266 ensembl protein_coding_gene 7526 7906 . + . ID=Phyra85615;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_266000003;logic_name=jgi_phyra1 scaffold_266 ensembl transcript 7526 7906 . + . ID=Phyra85615;Parent=Phyra85615;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_266 . CDS 7526 7906 . + 0 ID=Phyra85615;Parent=Phyra85615;rank=1 scaffold_266 . exon 7526 7906 . + . ID=Phyra85615.1;Parent=Phyra85615;constitutive=1;rank=1 scaffold_266 ensembl protein_coding_gene 5617 6261 . + . ID=Phyra97140;biotype=protein_coding;external_name=C_scaffold_266000001;logic_name=jgi_phyra1 scaffold_266 ensembl transcript 5617 6261 . + . ID=Phyra97140;Parent=Phyra97140;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_266 . CDS 5617 6261 . + 0 ID=Phyra97140;Parent=Phyra97140;rank=1 scaffold_266 . exon 5617 6261 . + . ID=Phyra97140.1;Parent=Phyra97140;constitutive=1;rank=1 scaffold_266 ensembl protein_coding_gene 8273 8692 . - . ID=Phyra85616;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_266000004;logic_name=jgi_phyra1 scaffold_266 ensembl transcript 8273 8692 . - . ID=Phyra85616;Parent=Phyra85616;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_266 . CDS 8273 8692 . - 0 ID=Phyra85616;Parent=Phyra85616;rank=1 scaffold_266 . exon 8273 8692 . - . ID=Phyra85616.1;Parent=Phyra85616;constitutive=1;rank=1 scaffold_266 ensembl protein_coding_gene 9197 10376 . + . ID=Phyra85617;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_266000005;logic_name=jgi_phyra1 scaffold_266 ensembl transcript 9197 10376 . + . ID=Phyra85617;Parent=Phyra85617;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_266 . CDS 9197 9412 . + 0 ID=Phyra85617;Parent=Phyra85617;rank=1 scaffold_266 . exon 9197 9412 . + . ID=Phyra85617.1;Parent=Phyra85617;constitutive=1;rank=1 scaffold_266 . CDS 9507 10376 . + 0 ID=Phyra85617;Parent=Phyra85617;rank=2 scaffold_266 . exon 9507 10376 . + . ID=Phyra85617.2;Parent=Phyra85617;constitutive=1;rank=2 scaffold_266 ensembl protein_coding_gene 13555 14307 . - . ID=Phyra85619;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_266000007;logic_name=jgi_phyra1 scaffold_266 ensembl transcript 13555 14307 . - . ID=Phyra85619;Parent=Phyra85619;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_266 . CDS 13555 14307 . - 0 ID=Phyra85619;Parent=Phyra85619;rank=1 scaffold_266 . exon 13555 14307 . - . ID=Phyra85619.1;Parent=Phyra85619;constitutive=1;rank=1 scaffold_266 ensembl protein_coding_gene 15287 17089 . + . ID=Phyra85620;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_266000008;logic_name=jgi_phyra1 scaffold_266 ensembl transcript 15287 17089 . + . ID=Phyra85620;Parent=Phyra85620;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_266 . CDS 15287 17089 . + 0 ID=Phyra85620;Parent=Phyra85620;rank=1 scaffold_266 . exon 15287 17089 . + . ID=Phyra85620.1;Parent=Phyra85620;constitutive=1;rank=1 scaffold_266 ensembl protein_coding_gene 10548 11094 . - . ID=Phyra97145;biotype=protein_coding;external_name=C_scaffold_266000006;logic_name=jgi_phyra1 scaffold_266 ensembl transcript 10548 11094 . - . ID=Phyra97145;Parent=Phyra97145;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_266 . CDS 10548 10607 . - 0 ID=Phyra97145;Parent=Phyra97145;rank=4 scaffold_266 . exon 10548 10607 . - . ID=Phyra97145.4;Parent=Phyra97145;constitutive=1;rank=4 scaffold_266 . CDS 10681 10741 . - 0 ID=Phyra97145;Parent=Phyra97145;rank=3 scaffold_266 . exon 10681 10741 . - . ID=Phyra97145.3;Parent=Phyra97145;constitutive=1;ensembl_phase=2;rank=3 scaffold_266 . CDS 10823 10872 . - 0 ID=Phyra97145;Parent=Phyra97145;rank=2 scaffold_266 . exon 10823 10872 . - . ID=Phyra97145.2;Parent=Phyra97145;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_266 . CDS 11086 11094 . - 0 ID=Phyra97145;Parent=Phyra97145;rank=1 scaffold_266 . exon 11086 11094 . - . ID=Phyra97145.1;Parent=Phyra97145;constitutive=1;rank=1 scaffold_266 ensembl protein_coding_gene 11370 13200 . + . ID=Phyra97146;biotype=protein_coding;external_name=C_scaffold_266000007;logic_name=jgi_phyra1 scaffold_266 ensembl transcript 11370 13200 . + . ID=Phyra97146;Parent=Phyra97146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_266 . CDS 11370 11620 . + 0 ID=Phyra97146;Parent=Phyra97146;rank=1 scaffold_266 . exon 11370 11620 . + . ID=Phyra97146.1;Parent=Phyra97146;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_266 . CDS 11699 11919 . + 0 ID=Phyra97146;Parent=Phyra97146;rank=2 scaffold_266 . exon 11699 11919 . + . ID=Phyra97146.2;Parent=Phyra97146;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_266 . CDS 12127 12389 . + 0 ID=Phyra97146;Parent=Phyra97146;rank=3 scaffold_266 . exon 12127 12389 . + . ID=Phyra97146.3;Parent=Phyra97146;constitutive=1;ensembl_phase=1;rank=3 scaffold_266 . CDS 12470 12546 . + 0 ID=Phyra97146;Parent=Phyra97146;rank=4 scaffold_266 . exon 12470 12546 . + . ID=Phyra97146.4;Parent=Phyra97146;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_266 . CDS 12867 12948 . + 0 ID=Phyra97146;Parent=Phyra97146;rank=5 scaffold_266 . exon 12867 12948 . + . ID=Phyra97146.5;Parent=Phyra97146;constitutive=1;ensembl_phase=2;rank=5 scaffold_266 . CDS 13024 13200 . + 0 ID=Phyra97146;Parent=Phyra97146;rank=6 scaffold_266 . exon 13024 13200 . + . ID=Phyra97146.6;Parent=Phyra97146;constitutive=1;rank=6 scaffold_266 . repeat_region 16600 16762 . + . description=(CAG)n scaffold_266 . repeat_region 16610 16777 . ? . description=trf scaffold_266 . biological_region 16921 16924 0.999 + . logic_name=eponine scaffold_266 . biological_region 18117 18120 0.999 - . logic_name=eponine scaffold_266 ensembl protein_coding_gene 17484 18659 . + . ID=Phyra85621;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_266000009;logic_name=jgi_phyra1 scaffold_266 ensembl transcript 17484 18659 . + . ID=Phyra85621;Parent=Phyra85621;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_266 . CDS 17484 17547 . + 0 ID=Phyra85621;Parent=Phyra85621;rank=1 scaffold_266 . exon 17484 17547 . + . ID=Phyra85621.1;Parent=Phyra85621;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_266 . CDS 17613 17746 . + 0 ID=Phyra85621;Parent=Phyra85621;rank=2 scaffold_266 . exon 17613 17746 . + . ID=Phyra85621.2;Parent=Phyra85621;constitutive=1;ensembl_phase=1;rank=2 scaffold_266 . CDS 17808 18281 . + 0 ID=Phyra85621;Parent=Phyra85621;rank=3 scaffold_266 . exon 17808 18281 . + . ID=Phyra85621.3;Parent=Phyra85621;constitutive=1;rank=3 scaffold_266 . CDS 18348 18659 . + 0 ID=Phyra85621;Parent=Phyra85621;rank=4 scaffold_266 . exon 18348 18659 . + . ID=Phyra85621.4;Parent=Phyra85621;constitutive=1;rank=4 scaffold_266 ensembl protein_coding_gene 19631 20890 . + . ID=Phyra85622;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_266000010;logic_name=jgi_phyra1 scaffold_266 ensembl transcript 19631 20890 . + . ID=Phyra85622;Parent=Phyra85622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_266 . CDS 19631 20890 . + 0 ID=Phyra85622;Parent=Phyra85622;rank=1 scaffold_266 . exon 19631 20890 . + . ID=Phyra85622.1;Parent=Phyra85622;constitutive=1;rank=1 scaffold_266 ensembl protein_coding_gene 21902 24718 . + . ID=Phyra85623;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_266000011;logic_name=jgi_phyra1 scaffold_266 ensembl transcript 21902 24718 . + . ID=Phyra85623;Parent=Phyra85623;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_266 . CDS 21902 24718 . + 0 ID=Phyra85623;Parent=Phyra85623;rank=1 scaffold_266 . exon 21902 24718 . + . ID=Phyra85623.1;Parent=Phyra85623;constitutive=1;rank=1 scaffold_266 . repeat_region 26900 26949 . ? . description=dust scaffold_266 . repeat_region 28667 28716 . ? . description=dust scaffold_266 . repeat_region 29777 29826 . ? . description=dust scaffold_266 . repeat_region 32027 32034 . ? . description=dust scaffold_266 ensembl protein_coding_gene 25286 25837 . + . ID=Phyra85624;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_266000012;logic_name=jgi_phyra1 scaffold_266 ensembl transcript 25286 25837 . + . ID=Phyra85624;Parent=Phyra85624;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_266 . CDS 25286 25837 . + 0 ID=Phyra85624;Parent=Phyra85624;rank=1 scaffold_266 . exon 25286 25837 . + . ID=Phyra85624.1;Parent=Phyra85624;constitutive=1;rank=1 scaffold_266 ensembl protein_coding_gene 26764 29324 . + . ID=Phyra85625;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_266000013;logic_name=jgi_phyra1 scaffold_266 ensembl transcript 26764 29324 . + . ID=Phyra85625;Parent=Phyra85625;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_266 . CDS 26764 26855 . + 0 ID=Phyra85625;Parent=Phyra85625;rank=1 scaffold_266 . exon 26764 26855 . + . ID=Phyra85625.1;Parent=Phyra85625;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_266 . CDS 27048 27670 . + 0 ID=Phyra85625;Parent=Phyra85625;rank=2 scaffold_266 . exon 27048 27670 . + . ID=Phyra85625.2;Parent=Phyra85625;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_266 . CDS 27734 28567 . + 0 ID=Phyra85625;Parent=Phyra85625;rank=3 scaffold_266 . exon 27734 28567 . + . ID=Phyra85625.3;Parent=Phyra85625;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_266 . CDS 28789 28938 . + 0 ID=Phyra85625;Parent=Phyra85625;rank=4 scaffold_266 . exon 28789 28938 . + . ID=Phyra85625.4;Parent=Phyra85625;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_266 . CDS 28960 29324 . + 0 ID=Phyra85625;Parent=Phyra85625;rank=5 scaffold_266 . exon 28960 29324 . + . ID=Phyra85625.5;Parent=Phyra85625;constitutive=1;ensembl_phase=1;rank=5 scaffold_266 ensembl protein_coding_gene 30216 31420 . - . ID=Phyra85626;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_266000014;logic_name=jgi_phyra1 scaffold_266 ensembl transcript 30216 31420 . - . ID=Phyra85626;Parent=Phyra85626;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_266 . CDS 30216 30549 . - 0 ID=Phyra85626;Parent=Phyra85626;rank=2 scaffold_266 . exon 30216 30549 . - . ID=Phyra85626.2;Parent=Phyra85626;constitutive=1;ensembl_phase=2;rank=2 scaffold_266 . CDS 30615 31420 . - 0 ID=Phyra85626;Parent=Phyra85626;rank=1 scaffold_266 . exon 30615 31420 . - . ID=Phyra85626.1;Parent=Phyra85626;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_265 1 32496 scaffold_265 . repeat_region 435 459 . ? . description=trf scaffold_265 . biological_region 3198 3202 0.999 + . logic_name=eponine scaffold_265 . repeat_region 3510 3535 . ? . description=trf scaffold_265 . biological_region 6739 6744 0.999 + . logic_name=eponine scaffold_265 . repeat_region 6784 6830 . ? . description=trf scaffold_265 . biological_region 6842 6846 0.999 - . logic_name=eponine scaffold_265 . biological_region 6955 6957 0.999 - . logic_name=eponine scaffold_265 . biological_region 7630 7630 0.999 + . logic_name=eponine scaffold_265 . biological_region 7654 7655 0.999 - . logic_name=eponine scaffold_265 . biological_region 7734 7734 0.999 + . logic_name=eponine scaffold_265 ensembl protein_coding_gene 1492 1845 . - . ID=Phyra85602;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_265000001;logic_name=jgi_phyra1 scaffold_265 ensembl transcript 1492 1845 . - . ID=Phyra85602;Parent=Phyra85602;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_265 . CDS 1492 1845 . - 0 ID=Phyra85602;Parent=Phyra85602;rank=1 scaffold_265 . exon 1492 1845 . - . ID=Phyra85602.1;Parent=Phyra85602;constitutive=1;rank=1 scaffold_265 ensembl protein_coding_gene 2228 3285 . - . ID=Phyra85603;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_265000002;logic_name=jgi_phyra1 scaffold_265 ensembl transcript 2228 3285 . - . ID=Phyra85603;Parent=Phyra85603;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_265 . CDS 2228 3121 . - 0 ID=Phyra85603;Parent=Phyra85603;rank=2 scaffold_265 . exon 2228 3121 . - . ID=Phyra85603.2;Parent=Phyra85603;constitutive=1;rank=2 scaffold_265 . CDS 3202 3285 . - 0 ID=Phyra85603;Parent=Phyra85603;rank=1 scaffold_265 . exon 3202 3285 . - . ID=Phyra85603.1;Parent=Phyra85603;constitutive=1;rank=1 scaffold_265 ensembl protein_coding_gene 3487 5576 . + . ID=Phyra85604;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_265000003;logic_name=jgi_phyra1 scaffold_265 ensembl transcript 3487 5576 . + . ID=Phyra85604;Parent=Phyra85604;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_265 . CDS 3487 3731 . + 0 ID=Phyra85604;Parent=Phyra85604;rank=1 scaffold_265 . exon 3487 3731 . + . ID=Phyra85604.1;Parent=Phyra85604;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_265 . CDS 3800 4032 . + 0 ID=Phyra85604;Parent=Phyra85604;rank=2 scaffold_265 . exon 3800 4032 . + . ID=Phyra85604.2;Parent=Phyra85604;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_265 . CDS 4097 4378 . + 0 ID=Phyra85604;Parent=Phyra85604;rank=3 scaffold_265 . exon 4097 4378 . + . ID=Phyra85604.3;Parent=Phyra85604;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_265 . CDS 4461 4542 . + 0 ID=Phyra85604;Parent=Phyra85604;rank=4 scaffold_265 . exon 4461 4542 . + . ID=Phyra85604.4;Parent=Phyra85604;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_265 . CDS 4618 4940 . + 0 ID=Phyra85604;Parent=Phyra85604;rank=5 scaffold_265 . exon 4618 4940 . + . ID=Phyra85604.5;Parent=Phyra85604;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_265 . CDS 5200 5576 . + 0 ID=Phyra85604;Parent=Phyra85604;rank=6 scaffold_265 . exon 5200 5576 . + . ID=Phyra85604.6;Parent=Phyra85604;constitutive=1;ensembl_phase=1;rank=6 scaffold_265 ensembl protein_coding_gene 5787 6890 . - . ID=Phyra85605;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_265000004;logic_name=jgi_phyra1 scaffold_265 ensembl transcript 5787 6890 . - . ID=Phyra85605;Parent=Phyra85605;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_265 . CDS 5787 6890 . - 0 ID=Phyra85605;Parent=Phyra85605;rank=1 scaffold_265 . exon 5787 6890 . - . ID=Phyra85605.1;Parent=Phyra85605;constitutive=1;rank=1 scaffold_265 . repeat_region 8253 8261 . ? . description=dust scaffold_265 ensembl protein_coding_gene 11263 14751 . - . ID=Phyra72354;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_265000001;logic_name=jgi_phyra1 scaffold_265 ensembl transcript 11263 14751 . - . ID=Phyra72354;Parent=Phyra72354;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_265 . CDS 11263 11304 . - 0 ID=Phyra72354;Parent=Phyra72354;rank=5 scaffold_265 . exon 11263 11304 . - . ID=Phyra72354.5;Parent=Phyra72354;constitutive=1;rank=5 scaffold_265 . CDS 11359 12267 . - 0 ID=Phyra72354;Parent=Phyra72354;rank=4 scaffold_265 . exon 11359 12267 . - . ID=Phyra72354.4;Parent=Phyra72354;constitutive=1;rank=4 scaffold_265 . CDS 12358 14097 . - 0 ID=Phyra72354;Parent=Phyra72354;rank=3 scaffold_265 . exon 12358 14097 . - . ID=Phyra72354.3;Parent=Phyra72354;constitutive=1;rank=3 scaffold_265 . CDS 14426 14445 . - 0 ID=Phyra72354;Parent=Phyra72354;rank=2 scaffold_265 . exon 14426 14445 . - . ID=Phyra72354.2;Parent=Phyra72354;constitutive=1;ensembl_phase=1;rank=2 scaffold_265 . CDS 14733 14751 . - 0 ID=Phyra72354;Parent=Phyra72354;rank=1 scaffold_265 . exon 14733 14751 . - . ID=Phyra72354.1;Parent=Phyra72354;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_265 ensembl protein_coding_gene 8786 11107 . + . ID=Phyra85606;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_265000005;logic_name=jgi_phyra1 scaffold_265 ensembl transcript 8786 11107 . + . ID=Phyra85606;Parent=Phyra85606;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_265 . CDS 8786 11107 . + 0 ID=Phyra85606;Parent=Phyra85606;rank=1 scaffold_265 . exon 8786 11107 . + . ID=Phyra85606.1;Parent=Phyra85606;constitutive=1;rank=1 scaffold_265 ensembl protein_coding_gene 14942 17011 . + . ID=Phyra85608;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_265000007;logic_name=jgi_phyra1 scaffold_265 ensembl transcript 14942 17011 . + . ID=Phyra85608;Parent=Phyra85608;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_265 . CDS 14942 17011 . + 0 ID=Phyra85608;Parent=Phyra85608;rank=1 scaffold_265 . exon 14942 17011 . + . ID=Phyra85608.1;Parent=Phyra85608;constitutive=1;rank=1 scaffold_265 . biological_region 19119 19120 0.999 + . logic_name=eponine scaffold_265 . biological_region 20639 20643 0.999 + . logic_name=eponine scaffold_265 . biological_region 21156 21157 0.999 - . logic_name=eponine scaffold_265 ensembl protein_coding_gene 17143 20077 . - . ID=Phyra85609;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_265000008;logic_name=jgi_phyra1 scaffold_265 ensembl transcript 17143 20077 . - . ID=Phyra85609;Parent=Phyra85609;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_265 . CDS 17143 19752 . - 0 ID=Phyra85609;Parent=Phyra85609;rank=3 scaffold_265 . exon 17143 19752 . - . ID=Phyra85609.3;Parent=Phyra85609;constitutive=1;rank=3 scaffold_265 . CDS 19828 19947 . - 0 ID=Phyra85609;Parent=Phyra85609;rank=2 scaffold_265 . exon 19828 19947 . - . ID=Phyra85609.2;Parent=Phyra85609;constitutive=1;rank=2 scaffold_265 . CDS 20024 20077 . - 0 ID=Phyra85609;Parent=Phyra85609;rank=1 scaffold_265 . exon 20024 20077 . - . ID=Phyra85609.1;Parent=Phyra85609;constitutive=1;rank=1 scaffold_265 ensembl protein_coding_gene 21426 22814 . - . ID=Phyra85610;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_265000009;logic_name=jgi_phyra1 scaffold_265 ensembl transcript 21426 22814 . - . ID=Phyra85610;Parent=Phyra85610;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_265 . CDS 21426 22814 . - 0 ID=Phyra85610;Parent=Phyra85610;rank=1 scaffold_265 . exon 21426 22814 . - . ID=Phyra85610.1;Parent=Phyra85610;constitutive=1;rank=1 scaffold_265 . repeat_region 27064 31517 . ? . description=dust scaffold_265 ensembl protein_coding_gene 24513 25607 . - . ID=Phyra85611;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_265000010;logic_name=jgi_phyra1 scaffold_265 ensembl transcript 24513 25607 . - . ID=Phyra85611;Parent=Phyra85611;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_265 . CDS 24513 24995 . - 0 ID=Phyra85611;Parent=Phyra85611;rank=4 scaffold_265 . exon 24513 24995 . - . ID=Phyra85611.4;Parent=Phyra85611;constitutive=1;rank=4 scaffold_265 . CDS 25031 25120 . - 0 ID=Phyra85611;Parent=Phyra85611;rank=3 scaffold_265 . exon 25031 25120 . - . ID=Phyra85611.3;Parent=Phyra85611;constitutive=1;rank=3 scaffold_265 . CDS 25199 25383 . - 0 ID=Phyra85611;Parent=Phyra85611;rank=2 scaffold_265 . exon 25199 25383 . - . ID=Phyra85611.2;Parent=Phyra85611;constitutive=1;ensembl_phase=1;rank=2 scaffold_265 . CDS 25448 25607 . - 0 ID=Phyra85611;Parent=Phyra85611;rank=1 scaffold_265 . exon 25448 25607 . - . ID=Phyra85611.1;Parent=Phyra85611;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_265 ensembl protein_coding_gene 31657 32494 . - . ID=Phyra85612;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_265000011;logic_name=jgi_phyra1 scaffold_265 ensembl transcript 31657 32494 . - . ID=Phyra85612;Parent=Phyra85612;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_265 . CDS 31657 31676 . - 0 ID=Phyra85612;Parent=Phyra85612;rank=3 scaffold_265 . exon 31657 31676 . - . ID=Phyra85612.3;Parent=Phyra85612;constitutive=1;ensembl_phase=1;rank=3 scaffold_265 . CDS 31721 32162 . - 0 ID=Phyra85612;Parent=Phyra85612;rank=2 scaffold_265 . exon 31721 32162 . - . ID=Phyra85612.2;Parent=Phyra85612;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_265 . CDS 32198 32494 . - 0 ID=Phyra85612;Parent=Phyra85612;rank=1 scaffold_265 . exon 32198 32494 . - . ID=Phyra85612.1;Parent=Phyra85612;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_264 1 33914 scaffold_264 . repeat_region 3696 3934 . ? . description=dust scaffold_264 . repeat_region 5564 6804 . - . description=GypsyPi-1c_I-int scaffold_264 . repeat_region 6806 6923 . ? . description=dust scaffold_264 ensembl protein_coding_gene 114 833 . - . ID=Phyra45966;biotype=protein_coding;external_name=gwEuk.264.3.1;logic_name=jgi_phyra1 scaffold_264 ensembl transcript 114 833 . - . ID=Phyra45966;Parent=Phyra45966;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_264 . CDS 114 634 . - 0 ID=Phyra45966;Parent=Phyra45966;rank=2 scaffold_264 . exon 114 634 . - . ID=Phyra45966.2;Parent=Phyra45966;constitutive=1;ensembl_phase=1;rank=2 scaffold_264 . CDS 704 833 . - 0 ID=Phyra45966;Parent=Phyra45966;rank=1 scaffold_264 . exon 704 833 . - . ID=Phyra45966.1;Parent=Phyra45966;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_264 ensembl protein_coding_gene 6080 6505 . - . ID=Phyra85599;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_264000001;logic_name=jgi_phyra1 scaffold_264 ensembl transcript 6080 6505 . - . ID=Phyra85599;Parent=Phyra85599;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_264 . CDS 6080 6505 . - 0 ID=Phyra85599;Parent=Phyra85599;rank=1 scaffold_264 . exon 6080 6505 . - . ID=Phyra85599.1;Parent=Phyra85599;constitutive=1;rank=1 scaffold_264 ensembl pseudogene 9848 10198 . + . ID=Phyra45965;biotype=pseudogene;external_name=gwEuk.264.2.1;logic_name=jgi_phyra1 scaffold_264 ensembl pseudogene 9848 10198 . + . ID=Phyra45965;Parent=Phyra45965;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_264 . exon 9848 10198 . + . ID=Phyra45965.1;Parent=Phyra45965;constitutive=1;rank=1 scaffold_264 . repeat_region 17589 17687 . ? . description=trf scaffold_264 . repeat_region 18825 18874 . ? . description=dust scaffold_264 . repeat_region 19598 19647 . ? . description=dust scaffold_264 . repeat_region 21945 23021 . ? . description=dust scaffold_264 . repeat_region 25434 25483 . ? . description=dust scaffold_264 ensembl protein_coding_gene 19919 21270 . + . ID=Phyra85601;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_264000003;logic_name=jgi_phyra1 scaffold_264 ensembl transcript 19919 21270 . + . ID=Phyra85601;Parent=Phyra85601;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_264 . CDS 19919 20589 . + 0 ID=Phyra85601;Parent=Phyra85601;rank=1 scaffold_264 . exon 19919 20589 . + . ID=Phyra85601.1;Parent=Phyra85601;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_264 . CDS 20629 21047 . + 0 ID=Phyra85601;Parent=Phyra85601;rank=2 scaffold_264 . exon 20629 21047 . + . ID=Phyra85601.2;Parent=Phyra85601;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_264 . CDS 21212 21270 . + 0 ID=Phyra85601;Parent=Phyra85601;rank=3 scaffold_264 . exon 21212 21270 . + . ID=Phyra85601.3;Parent=Phyra85601;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_263 1 36001 scaffold_263 . repeat_region 5 423 . - . description=GypsyPi-1c_I-int scaffold_263 . biological_region 955 960 0.999 - . logic_name=eponine scaffold_263 . repeat_region 1064 32560 . ? . description=dust scaffold_263 ensembl protein_coding_gene 55 747 . - . ID=Phyra85598;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_263000001;logic_name=jgi_phyra1 scaffold_263 ensembl transcript 55 747 . - . ID=Phyra85598;Parent=Phyra85598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_263 . CDS 55 747 . - 0 ID=Phyra85598;Parent=Phyra85598;rank=1 scaffold_263 . exon 55 747 . - . ID=Phyra85598.1;Parent=Phyra85598;constitutive=1;rank=1 scaffold_263 . repeat_region 1064 32560 . ? . description=dust scaffold_263 . repeat_region 32561 32713 . - . description=GypsyPi-1c_I-int scaffold_263 . biological_region 33186 33187 0.999 - . logic_name=eponine scaffold_263 . biological_region 33238 33243 0.999 - . logic_name=eponine scaffold_263 . biological_region 35142 35145 0.999 - . logic_name=eponine scaffold_263 . repeat_region 35288 35485 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_257 1 36086 scaffold_257 . repeat_region 1453 35523 . ? . description=dust scaffold_257 ensembl protein_coding_gene 251 988 . - . ID=Phyra45764;biotype=protein_coding;external_name=gwEuk.257.7.1;logic_name=jgi_phyra1 scaffold_257 ensembl transcript 251 988 . - . ID=Phyra45764;Parent=Phyra45764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_257 . CDS 251 988 . - 0 ID=Phyra45764;Parent=Phyra45764;rank=1 scaffold_257 . exon 251 988 . - . ID=Phyra45764.1;Parent=Phyra45764;constitutive=1;rank=1 scaffold_257 ensembl protein_coding_gene 1097 1231 . + . ID=Phyra45767;biotype=protein_coding;external_name=gwEuk.257.10.1;logic_name=jgi_phyra1 scaffold_257 ensembl transcript 1097 1231 . + . ID=Phyra45767;Parent=Phyra45767;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_257 . CDS 1097 1231 . + 0 ID=Phyra45767;Parent=Phyra45767;rank=1 scaffold_257 . exon 1097 1231 . + . ID=Phyra45767.1;Parent=Phyra45767;constitutive=1;rank=1 scaffold_257 . repeat_region 1453 35523 . ? . description=dust scaffold_257 ensembl pseudogene 35524 35887 . + . ID=Phyra45759;biotype=pseudogene;external_name=gwEuk.257.2.1;logic_name=jgi_phyra1 scaffold_257 ensembl pseudogene 35524 35887 . + . ID=Phyra45759;Parent=Phyra45759;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_257 . exon 35524 35887 . + . ID=Phyra45759.1;Parent=Phyra45759;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_256 1 36092 scaffold_256 . biological_region 1232 1235 0.999 + . logic_name=eponine scaffold_256 . biological_region 1241 1241 0.999 - . logic_name=eponine scaffold_256 . repeat_region 1433 34721 . ? . description=dust scaffold_256 . repeat_region 1433 34721 . ? . description=dust scaffold_256 . repeat_region 34747 34829 . - . description=Polinton-1_PI scaffold_256 . repeat_region 35299 36090 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_253 1 36203 scaffold_253 . repeat_region 747 34917 . ? . description=dust scaffold_253 . repeat_region 747 34917 . ? . description=dust scaffold_253 . repeat_region 35690 35732 . ? . description=trf scaffold_253 ensembl protein_coding_gene 34943 35596 . + . ID=Phyra72351;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_253000001;logic_name=jgi_phyra1 scaffold_253 ensembl transcript 34943 35596 . + . ID=Phyra72351;Parent=Phyra72351;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_253 . CDS 34943 35596 . + 0 ID=Phyra72351;Parent=Phyra72351;rank=1 scaffold_253 . exon 34943 35596 . + . ID=Phyra72351.1;Parent=Phyra72351;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_248 1 36289 scaffold_248 . repeat_region 910 34987 . ? . description=dust scaffold_248 . repeat_region 910 34987 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_250 1 36301 scaffold_250 . repeat_region 1215 6354 . ? . description=dust scaffold_250 . biological_region 8599 8602 0.999 - . logic_name=eponine scaffold_250 . biological_region 8634 8634 0.999 + . logic_name=eponine scaffold_250 . biological_region 8771 8773 0.999 + . logic_name=eponine scaffold_250 . biological_region 8883 8890 0.999 - . logic_name=eponine scaffold_250 . biological_region 8935 8937 0.999 - . logic_name=eponine scaffold_250 ensembl protein_coding_gene 36 959 . + . ID=Phyra85587;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_250000001;logic_name=jgi_phyra1 scaffold_250 ensembl transcript 36 959 . + . ID=Phyra85587;Parent=Phyra85587;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_250 . CDS 36 959 . + 0 ID=Phyra85587;Parent=Phyra85587;rank=1 scaffold_250 . exon 36 959 . + . ID=Phyra85587.1;Parent=Phyra85587;constitutive=1;rank=1 scaffold_250 ensembl protein_coding_gene 7280 12313 . - . ID=Phyra85588;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_250000002;logic_name=jgi_phyra1 scaffold_250 ensembl transcript 7280 12313 . - . ID=Phyra85588;Parent=Phyra85588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_250 . CDS 7280 12313 . - 0 ID=Phyra85588;Parent=Phyra85588;rank=1 scaffold_250 . exon 7280 12313 . - . ID=Phyra85588.1;Parent=Phyra85588;constitutive=1;rank=1 scaffold_250 . repeat_region 11277 11314 . ? . description=trf scaffold_250 . repeat_region 13370 35601 . ? . description=dust scaffold_250 . repeat_region 35995 36301 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_251 1 36301 scaffold_251 . repeat_region 2787 2808 . ? . description=dust scaffold_251 . repeat_region 2813 2864 . ? . description=trf scaffold_251 . repeat_region 2815 2834 . ? . description=trf scaffold_251 . repeat_region 2930 2970 . ? . description=trf scaffold_251 . repeat_region 7342 8758 . ? . description=dust scaffold_251 ensembl protein_coding_gene 2593 3072 . - . ID=Phyra85589;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_251000001;logic_name=jgi_phyra1 scaffold_251 ensembl transcript 2593 3072 . - . ID=Phyra85589;Parent=Phyra85589;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_251 . CDS 2593 3072 . - 0 ID=Phyra85589;Parent=Phyra85589;rank=1 scaffold_251 . exon 2593 3072 . - . ID=Phyra85589.1;Parent=Phyra85589;constitutive=1;rank=1 scaffold_251 ensembl protein_coding_gene 5632 8820 . - . ID=Phyra85590;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_251000002;logic_name=jgi_phyra1 scaffold_251 ensembl transcript 5632 8820 . - . ID=Phyra85590;Parent=Phyra85590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_251 . CDS 5632 5935 . - 0 ID=Phyra85590;Parent=Phyra85590;rank=5 scaffold_251 . exon 5632 5935 . - . ID=Phyra85590.5;Parent=Phyra85590;constitutive=1;ensembl_phase=2;rank=5 scaffold_251 . CDS 6017 6178 . - 0 ID=Phyra85590;Parent=Phyra85590;rank=4 scaffold_251 . exon 6017 6178 . - . ID=Phyra85590.4;Parent=Phyra85590;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_251 . CDS 6259 6658 . - 0 ID=Phyra85590;Parent=Phyra85590;rank=3 scaffold_251 . exon 6259 6658 . - . ID=Phyra85590.3;Parent=Phyra85590;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_251 . CDS 6794 7192 . - 0 ID=Phyra85590;Parent=Phyra85590;rank=2 scaffold_251 . exon 6794 7192 . - . ID=Phyra85590.2;Parent=Phyra85590;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_251 . CDS 8808 8820 . - 0 ID=Phyra85590;Parent=Phyra85590;rank=1 scaffold_251 . exon 8808 8820 . - . ID=Phyra85590.1;Parent=Phyra85590;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_251 . biological_region 10512 10518 0.999 - . logic_name=eponine scaffold_251 ensembl protein_coding_gene 10388 10981 . + . ID=Phyra85591;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_251000003;logic_name=jgi_phyra1 scaffold_251 ensembl transcript 10388 10981 . + . ID=Phyra85591;Parent=Phyra85591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_251 . CDS 10388 10981 . + 0 ID=Phyra85591;Parent=Phyra85591;rank=1 scaffold_251 . exon 10388 10981 . + . ID=Phyra85591.1;Parent=Phyra85591;constitutive=1;rank=1 scaffold_251 . repeat_region 18138 18166 . ? . description=trf scaffold_251 . repeat_region 24931 24940 . ? . description=dust scaffold_251 ensembl protein_coding_gene 25452 26144 . + . ID=Phyra85592;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_251000004;logic_name=jgi_phyra1 scaffold_251 ensembl transcript 25452 26144 . + . ID=Phyra85592;Parent=Phyra85592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_251 . CDS 25452 26144 . + 0 ID=Phyra85592;Parent=Phyra85592;rank=1 scaffold_251 . exon 25452 26144 . + . ID=Phyra85592.1;Parent=Phyra85592;constitutive=1;rank=1 scaffold_251 . biological_region 27707 27709 0.999 - . logic_name=eponine scaffold_251 . biological_region 29966 29968 0.999 + . logic_name=eponine scaffold_251 ensembl protein_coding_gene 35767 36245 . - . ID=Phyra85593;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_251000005;logic_name=jgi_phyra1 scaffold_251 ensembl transcript 35767 36245 . - . ID=Phyra85593;Parent=Phyra85593;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_251 . CDS 35767 36097 . - 0 ID=Phyra85593;Parent=Phyra85593;rank=2 scaffold_251 . exon 35767 36097 . - . ID=Phyra85593.2;Parent=Phyra85593;constitutive=1;ensembl_phase=2;rank=2 scaffold_251 . CDS 36163 36245 . - 0 ID=Phyra85593;Parent=Phyra85593;rank=1 scaffold_251 . exon 36163 36245 . - . ID=Phyra85593.1;Parent=Phyra85593;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_247 1 36348 scaffold_247 . repeat_region 1266 35511 . ? . description=dust scaffold_247 ensembl protein_coding_gene 410 1075 . + . ID=Phyra85586;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_247000001;logic_name=jgi_phyra1 scaffold_247 ensembl transcript 410 1075 . + . ID=Phyra85586;Parent=Phyra85586;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_247 . CDS 410 1075 . + 0 ID=Phyra85586;Parent=Phyra85586;rank=1 scaffold_247 . exon 410 1075 . + . ID=Phyra85586.1;Parent=Phyra85586;constitutive=1;rank=1 scaffold_247 . repeat_region 1266 35511 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_258 1 36411 scaffold_258 . biological_region 147 150 0.999 - . logic_name=eponine scaffold_258 . biological_region 191 196 0.999 - . logic_name=eponine scaffold_258 . repeat_region 1246 28110 . ? . description=dust scaffold_258 . repeat_region 1246 28110 . ? . description=dust scaffold_258 . repeat_region 28533 28552 . ? . description=trf scaffold_258 . biological_region 29414 29419 0.999 + . logic_name=eponine scaffold_258 . biological_region 29562 29564 0.999 - . logic_name=eponine scaffold_258 . repeat_region 36084 36411 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_255 1 36416 scaffold_255 . repeat_region 545 631 . ? . description=dust scaffold_255 . repeat_region 577 631 . ? . description=trf scaffold_255 . repeat_region 578 638 . ? . description=trf scaffold_255 . repeat_region 753 845 . ? . description=trf scaffold_255 . repeat_region 1051 35184 . ? . description=dust scaffold_255 ensembl tRNA_gene 675 747 . + . ID=EPrPRAG00000000027;biotype=tRNA;description=tRNA-Ala for anticodon CGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_255 ensembl transcript 675 747 . + . ID=EPrPRAT00000000027;Parent=EPrPRAG00000000027;biotype=tRNA;logic_name=ncrna_eg scaffold_255 . exon 675 747 . + . ID=EPrPRAE00000000027;Parent=EPrPRAT00000000027;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_255 . repeat_region 1051 35184 . ? . description=dust scaffold_255 . repeat_region 36062 36122 . ? . description=trf scaffold_255 . repeat_region 36066 36118 . ? . description=trf scaffold_255 . repeat_region 36237 36329 . ? . description=trf scaffold_255 ensembl tRNA_gene 36159 36231 . + . ID=EPrPRAG00000000063;biotype=tRNA;description=tRNA-Ala for anticodon CGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_255 ensembl transcript 36159 36231 . + . ID=EPrPRAT00000000063;Parent=EPrPRAG00000000063;biotype=tRNA;logic_name=ncrna_eg scaffold_255 . exon 36159 36231 . + . ID=EPrPRAE00000000063;Parent=EPrPRAT00000000063;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_246 1 36461 scaffold_246 . repeat_region 343 381 . ? . description=trf scaffold_246 . repeat_region 1230 35526 . ? . description=dust scaffold_246 . repeat_region 1230 35526 . ? . description=dust scaffold_246 . repeat_region 35527 35966 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_245 1 36514 scaffold_245 . repeat_region 1052 35300 . ? . description=dust scaffold_245 ensembl protein_coding_gene 134 1015 . + . ID=Phyra72350;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_245000001;logic_name=jgi_phyra1 scaffold_245 ensembl transcript 134 1015 . + . ID=Phyra72350;Parent=Phyra72350;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_245 . CDS 134 1015 . + 0 ID=Phyra72350;Parent=Phyra72350;rank=1 scaffold_245 . exon 134 1015 . + . ID=Phyra72350.1;Parent=Phyra72350;constitutive=1;rank=1 scaffold_245 . repeat_region 1052 35300 . ? . description=dust scaffold_245 . repeat_region 35357 35399 . ? . description=trf scaffold_245 . repeat_region 35498 35544 . ? . description=trf scaffold_245 . biological_region 35735 35739 0.999 + . logic_name=eponine scaffold_245 . repeat_region 35924 35964 . ? . description=trf scaffold_245 ensembl protein_coding_gene 35671 36504 . + . ID=Phyra85585;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_245000002;logic_name=jgi_phyra1 scaffold_245 ensembl transcript 35671 36504 . + . ID=Phyra85585;Parent=Phyra85585;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_245 . CDS 35671 36504 . + 0 ID=Phyra85585;Parent=Phyra85585;rank=1 scaffold_245 . exon 35671 36504 . + . ID=Phyra85585.1;Parent=Phyra85585;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_243 1 36569 scaffold_243 . repeat_region 71 163 . ? . description=trf scaffold_243 . repeat_region 707 829 . ? . description=dust scaffold_243 . repeat_region 761 824 . ? . description=trf scaffold_243 . repeat_region 774 830 . ? . description=trf scaffold_243 . repeat_region 860 909 . ? . description=dust scaffold_243 . repeat_region 2237 28602 . ? . description=dust scaffold_243 . repeat_region 2237 28602 . ? . description=dust scaffold_243 . repeat_region 28612 28653 . ? . description=trf scaffold_243 . repeat_region 29322 29352 . ? . description=trf scaffold_243 . repeat_region 35762 35803 . ? . description=trf scaffold_243 . repeat_region 36270 36569 . ? . description=trf scaffold_243 ensembl protein_coding_gene 28747 29580 . - . ID=Phyra85583;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_243000001;logic_name=jgi_phyra1 scaffold_243 ensembl transcript 28747 29580 . - . ID=Phyra85583;Parent=Phyra85583;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_243 . CDS 28747 29580 . - 0 ID=Phyra85583;Parent=Phyra85583;rank=1 scaffold_243 . exon 28747 29580 . - . ID=Phyra85583.1;Parent=Phyra85583;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_244 1 36597 scaffold_244 . repeat_region 1747 32697 . ? . description=dust scaffold_244 . repeat_region 1747 32697 . ? . description=dust scaffold_244 . repeat_region 33974 33999 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_240 1 36622 scaffold_240 . repeat_region 267 291 . ? . description=trf scaffold_240 . repeat_region 1536 35296 . ? . description=dust scaffold_240 ensembl protein_coding_gene 483 1535 . + . ID=Phyra45443;biotype=protein_coding;external_name=gwEuk.240.10.1;logic_name=jgi_phyra1 scaffold_240 ensembl transcript 483 1535 . + . ID=Phyra45443;Parent=Phyra45443;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_240 . CDS 483 1535 . + 0 ID=Phyra45443;Parent=Phyra45443;rank=1 scaffold_240 . exon 483 1535 . + . ID=Phyra45443.1;Parent=Phyra45443;constitutive=1;rank=1 scaffold_240 . repeat_region 1536 35296 . ? . description=dust scaffold_240 . repeat_region 35417 35459 . ? . description=trf scaffold_240 . repeat_region 35558 35604 . ? . description=trf scaffold_240 ensembl protein_coding_gene 35759 36096 . + . ID=Phyra72349;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_240000001;logic_name=jgi_phyra1 scaffold_240 ensembl transcript 35759 36096 . + . ID=Phyra72349;Parent=Phyra72349;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_240 . CDS 35759 36019 . + 0 ID=Phyra72349;Parent=Phyra72349;rank=1 scaffold_240 . exon 35759 36019 . + . ID=Phyra72349.1;Parent=Phyra72349;constitutive=1;rank=1 scaffold_240 . CDS 36043 36096 . + 0 ID=Phyra72349;Parent=Phyra72349;rank=2 scaffold_240 . exon 36043 36096 . + . ID=Phyra72349.2;Parent=Phyra72349;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_242 1 36642 scaffold_242 . repeat_region 2632 7732 . ? . description=dust scaffold_242 . repeat_region 9057 9800 . ? . description=dust scaffold_242 ensembl protein_coding_gene 7824 8880 . + . ID=Phyra85581;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_242000001;logic_name=jgi_phyra1 scaffold_242 ensembl transcript 7824 8880 . + . ID=Phyra85581;Parent=Phyra85581;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_242 . CDS 7824 8821 . + 0 ID=Phyra85581;Parent=Phyra85581;rank=1 scaffold_242 . exon 7824 8821 . + . ID=Phyra85581.1;Parent=Phyra85581;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_242 . CDS 8841 8880 . + 0 ID=Phyra85581;Parent=Phyra85581;rank=2 scaffold_242 . exon 8841 8880 . + . ID=Phyra85581.2;Parent=Phyra85581;constitutive=1;ensembl_phase=2;rank=2 scaffold_242 . biological_region 10569 10570 0.999 + . logic_name=eponine scaffold_242 . repeat_region 21708 21722 . ? . description=dust scaffold_242 . repeat_region 21892 23200 . - . description=Polinton-1_PI scaffold_242 . repeat_region 23238 23296 . - . description=Polinton-1_PI scaffold_242 . repeat_region 23298 23375 . ? . description=trf scaffold_242 . repeat_region 23298 23375 . ? . description=dust scaffold_242 . repeat_region 23298 23375 . + . description=(GA)n scaffold_242 . repeat_region 23448 24251 . - . description=Polinton-1_PI scaffold_242 ensembl pseudogene 27678 27931 . + . ID=Phyra45451;biotype=pseudogene;external_name=gwEuk.242.5.1;logic_name=jgi_phyra1 scaffold_242 ensembl pseudogene 27678 27931 . + . ID=Phyra45451;Parent=Phyra45451;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_242 . exon 27678 27931 . + . ID=Phyra45451.1;Parent=Phyra45451;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_242 ensembl protein_coding_gene 30695 32099 . - . ID=Phyra85582;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_242000002;logic_name=jgi_phyra1 scaffold_242 ensembl transcript 30695 32099 . - . ID=Phyra85582;Parent=Phyra85582;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_242 . CDS 30695 30998 . - 0 ID=Phyra85582;Parent=Phyra85582;rank=4 scaffold_242 . exon 30695 30998 . - . ID=Phyra85582.4;Parent=Phyra85582;constitutive=1;ensembl_phase=2;rank=4 scaffold_242 . CDS 31154 31234 . - 0 ID=Phyra85582;Parent=Phyra85582;rank=3 scaffold_242 . exon 31154 31234 . - . ID=Phyra85582.3;Parent=Phyra85582;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_242 . CDS 31409 31855 . - 0 ID=Phyra85582;Parent=Phyra85582;rank=2 scaffold_242 . exon 31409 31855 . - . ID=Phyra85582.2;Parent=Phyra85582;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_242 . CDS 31882 32099 . - 0 ID=Phyra85582;Parent=Phyra85582;rank=1 scaffold_242 . exon 31882 32099 . - . ID=Phyra85582.1;Parent=Phyra85582;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_241 1 36660 scaffold_241 . repeat_region 759 787 . ? . description=trf scaffold_241 . repeat_region 1212 34978 . ? . description=dust scaffold_241 . repeat_region 1212 34978 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_238 1 36732 scaffold_238 . repeat_region 1685 1692 . ? . description=dust scaffold_238 . repeat_region 3337 35206 . ? . description=dust scaffold_238 . repeat_region 3337 35206 . ? . description=dust scaffold_238 . biological_region 35941 35941 0.999 - . logic_name=eponine scaffold_238 ensembl protein_coding_gene 35654 36586 . + . ID=Phyra85577;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_238000001;logic_name=jgi_phyra1 scaffold_238 ensembl transcript 35654 36586 . + . ID=Phyra85577;Parent=Phyra85577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_238 . CDS 35654 36586 . + 0 ID=Phyra85577;Parent=Phyra85577;rank=1 scaffold_238 . exon 35654 36586 . + . ID=Phyra85577.1;Parent=Phyra85577;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_236 1 36949 scaffold_236 . repeat_region 1508 28705 . ? . description=dust scaffold_236 . repeat_region 1508 28705 . ? . description=dust scaffold_236 . biological_region 29433 29436 0.999 + . logic_name=eponine scaffold_236 . biological_region 29857 29859 0.999 - . logic_name=eponine scaffold_236 . repeat_region 31274 31359 . ? . description=trf scaffold_236 ensembl protein_coding_gene 28821 29958 . - . ID=Phyra85573;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_236000001;logic_name=jgi_phyra1 scaffold_236 ensembl transcript 28821 29958 . - . ID=Phyra85573;Parent=Phyra85573;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_236 . CDS 28821 28830 . - 0 ID=Phyra85573;Parent=Phyra85573;rank=2 scaffold_236 . exon 28821 28830 . - . ID=Phyra85573.2;Parent=Phyra85573;constitutive=1;ensembl_phase=2;rank=2 scaffold_236 . CDS 28973 29958 . - 0 ID=Phyra85573;Parent=Phyra85573;rank=1 scaffold_236 . exon 28973 29958 . - . ID=Phyra85573.1;Parent=Phyra85573;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_236 ensembl protein_coding_gene 33998 34778 . + . ID=Phyra85574;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_236000002;logic_name=jgi_phyra1 scaffold_236 ensembl transcript 33998 34778 . + . ID=Phyra85574;Parent=Phyra85574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_236 . CDS 33998 34606 . + 0 ID=Phyra85574;Parent=Phyra85574;rank=1 scaffold_236 . exon 33998 34606 . + . ID=Phyra85574.1;Parent=Phyra85574;constitutive=1;rank=1 scaffold_236 . CDS 34710 34778 . + 0 ID=Phyra85574;Parent=Phyra85574;rank=2 scaffold_236 . exon 34710 34778 . + . ID=Phyra85574.2;Parent=Phyra85574;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_235 1 37087 scaffold_235 . repeat_region 1769 28504 . ? . description=dust scaffold_235 ensembl protein_coding_gene 70 1629 . + . ID=Phyra85571;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_235000001;logic_name=jgi_phyra1 scaffold_235 ensembl transcript 70 1629 . + . ID=Phyra85571;Parent=Phyra85571;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_235 . exon 70 665 . + . ID=Phyra85571.1;Parent=Phyra85571;constitutive=1;ensembl_phase=-1;rank=1 scaffold_235 . CDS 72 665 . + 0 ID=Phyra85571;Parent=Phyra85571;rank=1 scaffold_235 . CDS 1031 1568 . + 0 ID=Phyra85571;Parent=Phyra85571;rank=2 scaffold_235 . exon 1031 1568 . + . ID=Phyra85571.2;Parent=Phyra85571;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_235 . CDS 1616 1629 . + 0 ID=Phyra85571;Parent=Phyra85571;rank=3 scaffold_235 . exon 1616 1629 . + . ID=Phyra85571.3;Parent=Phyra85571;constitutive=1;ensembl_phase=1;rank=3 scaffold_235 . repeat_region 1769 28504 . ? . description=dust scaffold_235 . biological_region 28559 28563 0.999 + . logic_name=eponine scaffold_235 . biological_region 29156 29159 0.999 - . logic_name=eponine scaffold_235 . biological_region 29336 29339 0.999 + . logic_name=eponine scaffold_235 . biological_region 29544 29546 0.999 - . logic_name=eponine scaffold_235 . biological_region 29604 29610 0.999 - . logic_name=eponine scaffold_235 ensembl protein_coding_gene 35125 37083 . + . ID=Phyra45270;biotype=protein_coding;external_name=gwEuk.235.5.1;logic_name=jgi_phyra1 scaffold_235 ensembl transcript 35125 37083 . + . ID=Phyra45270;Parent=Phyra45270;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_235 . CDS 35125 37083 . + 0 ID=Phyra45270;Parent=Phyra45270;rank=1 scaffold_235 . exon 35125 37083 . + . ID=Phyra45270.1;Parent=Phyra45270;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_239 1 37155 scaffold_239 . repeat_region 1 283 . ? . description=trf scaffold_239 . repeat_region 1 283 . ? . description=dust scaffold_239 . repeat_region 765 807 . ? . description=trf scaffold_239 . biological_region 1516 1520 0.999 + . logic_name=eponine scaffold_239 . repeat_region 1658 3362 . ? . description=dust scaffold_239 . biological_region 3479 3482 0.999 - . logic_name=eponine scaffold_239 . repeat_region 4243 35529 . ? . description=dust scaffold_239 . repeat_region 4243 35529 . ? . description=dust scaffold_239 ensembl protein_coding_gene 36246 37145 . + . ID=Phyra85578;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_239000001;logic_name=jgi_phyra1 scaffold_239 ensembl transcript 36246 37145 . + . ID=Phyra85578;Parent=Phyra85578;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_239 . CDS 36246 37145 . + 0 ID=Phyra85578;Parent=Phyra85578;rank=1 scaffold_239 . exon 36246 37145 . + . ID=Phyra85578.1;Parent=Phyra85578;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_237 1 37167 scaffold_237 . biological_region 2313 2314 0.999 + . logic_name=eponine scaffold_237 . repeat_region 3275 3289 . ? . description=dust scaffold_237 . repeat_region 3820 7672 . ? . description=dust scaffold_237 ensembl protein_coding_gene 1114 2752 . + . ID=Phyra85575;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_237000001;logic_name=jgi_phyra1 scaffold_237 ensembl transcript 1114 2752 . + . ID=Phyra85575;Parent=Phyra85575;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_237 . CDS 1114 2620 . + 0 ID=Phyra85575;Parent=Phyra85575;rank=1 scaffold_237 . exon 1114 2620 . + . ID=Phyra85575.1;Parent=Phyra85575;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_237 . CDS 2724 2752 . + 0 ID=Phyra85575;Parent=Phyra85575;rank=2 scaffold_237 . exon 2724 2752 . + . ID=Phyra85575.2;Parent=Phyra85575;constitutive=1;ensembl_phase=1;rank=2 scaffold_237 ensembl protein_coding_gene 8453 9263 . + . ID=Phyra85576;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_237000002;logic_name=jgi_phyra1 scaffold_237 ensembl transcript 8453 9263 . + . ID=Phyra85576;Parent=Phyra85576;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_237 . CDS 8453 9193 . + 0 ID=Phyra85576;Parent=Phyra85576;rank=1 scaffold_237 . exon 8453 9193 . + . ID=Phyra85576.1;Parent=Phyra85576;constitutive=1;rank=1 scaffold_237 . CDS 9216 9263 . + 0 ID=Phyra85576;Parent=Phyra85576;rank=2 scaffold_237 . exon 9216 9263 . + . ID=Phyra85576.2;Parent=Phyra85576;constitutive=1;rank=2 scaffold_237 . repeat_region 9811 36318 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_230 1 37285 scaffold_230 . repeat_region 1382 1389 . ? . description=dust scaffold_230 . repeat_region 2103 36427 . ? . description=dust scaffold_230 . repeat_region 2103 36427 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_231 1 37292 scaffold_231 . repeat_region 1582 35907 . ? . description=dust scaffold_231 . repeat_region 1582 35907 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_232 1 37300 scaffold_232 . biological_region 1108 1110 0.999 - . logic_name=eponine scaffold_232 . repeat_region 1236 33677 . ? . description=dust scaffold_232 . repeat_region 1236 33677 . ? . description=dust scaffold_232 . biological_region 35056 35058 0.999 + . logic_name=eponine scaffold_232 . biological_region 36497 36502 0.999 - . logic_name=eponine scaffold_232 ensembl protein_coding_gene 34035 35136 . + . ID=Phyra85556;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_232000001;logic_name=jgi_phyra1 scaffold_232 ensembl transcript 34035 35136 . + . ID=Phyra85556;Parent=Phyra85556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_232 . CDS 34035 34279 . + 0 ID=Phyra85556;Parent=Phyra85556;rank=1 scaffold_232 . exon 34035 34279 . + . ID=Phyra85556.1;Parent=Phyra85556;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_232 . CDS 34349 34413 . + 0 ID=Phyra85556;Parent=Phyra85556;rank=2 scaffold_232 . exon 34349 34413 . + . ID=Phyra85556.2;Parent=Phyra85556;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_232 . CDS 34449 34461 . + 0 ID=Phyra85556;Parent=Phyra85556;rank=3 scaffold_232 . exon 34449 34461 . + . ID=Phyra85556.3;Parent=Phyra85556;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_232 . CDS 34520 34700 . + 0 ID=Phyra85556;Parent=Phyra85556;rank=4 scaffold_232 . exon 34520 34700 . + . ID=Phyra85556.4;Parent=Phyra85556;constitutive=1;ensembl_phase=2;rank=4 scaffold_232 . CDS 34765 35136 . + 0 ID=Phyra85556;Parent=Phyra85556;rank=5 scaffold_232 . exon 34765 35136 . + . ID=Phyra85556.5;Parent=Phyra85556;constitutive=1;rank=5 scaffold_232 ensembl protein_coding_gene 36663 37175 . - . ID=Phyra85557;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_232000002;logic_name=jgi_phyra1 scaffold_232 ensembl transcript 36663 37175 . - . ID=Phyra85557;Parent=Phyra85557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_232 . CDS 36663 36935 . - 0 ID=Phyra85557;Parent=Phyra85557;rank=2 scaffold_232 . exon 36663 36935 . - . ID=Phyra85557.2;Parent=Phyra85557;constitutive=1;rank=2 scaffold_232 . CDS 36996 37175 . - 0 ID=Phyra85557;Parent=Phyra85557;rank=1 scaffold_232 . exon 36996 37175 . - . ID=Phyra85557.1;Parent=Phyra85557;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_228 1 37418 scaffold_228 . repeat_region 1297 34798 . ? . description=dust scaffold_228 . repeat_region 1297 34798 . ? . description=dust scaffold_228 . biological_region 36550 36552 0.999 - . logic_name=eponine scaffold_228 . biological_region 36584 36588 0.999 - . logic_name=eponine scaffold_228 . biological_region 36622 36625 0.999 - . logic_name=eponine scaffold_228 . biological_region 36641 36643 0.999 + . logic_name=eponine scaffold_228 ensembl protein_coding_gene 35451 36720 . - . ID=Phyra85552;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_228000001;logic_name=jgi_phyra1 scaffold_228 ensembl transcript 35451 36720 . - . ID=Phyra85552;Parent=Phyra85552;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_228 . CDS 35451 35602 . - 0 ID=Phyra85552;Parent=Phyra85552;rank=3 scaffold_228 . exon 35451 35602 . - . ID=Phyra85552.3;Parent=Phyra85552;constitutive=1;ensembl_phase=1;rank=3 scaffold_228 . CDS 35669 35740 . - 0 ID=Phyra85552;Parent=Phyra85552;rank=2 scaffold_228 . exon 35669 35740 . - . ID=Phyra85552.2;Parent=Phyra85552;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_228 . CDS 35832 36720 . - 0 ID=Phyra85552;Parent=Phyra85552;rank=1 scaffold_228 . exon 35832 36720 . - . ID=Phyra85552.1;Parent=Phyra85552;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_229 1 37449 scaffold_229 . repeat_region 7 46 . ? . description=trf scaffold_229 . repeat_region 7 46 . ? . description=trf scaffold_229 . repeat_region 7 46 . ? . description=dust scaffold_229 . repeat_region 9 37 . ? . description=trf scaffold_229 . repeat_region 2891 2900 . ? . description=dust scaffold_229 . repeat_region 3930 6467 . ? . description=dust scaffold_229 . biological_region 6893 6896 0.999 + . logic_name=eponine scaffold_229 . repeat_region 8388 8399 . ? . description=dust scaffold_229 ensembl protein_coding_gene 953 1491 . + . ID=Phyra85553;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_229000001;logic_name=jgi_phyra1 scaffold_229 ensembl transcript 953 1491 . + . ID=Phyra85553;Parent=Phyra85553;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_229 . CDS 953 1049 . + 0 ID=Phyra85553;Parent=Phyra85553;rank=1 scaffold_229 . exon 953 1049 . + . ID=Phyra85553.1;Parent=Phyra85553;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_229 . CDS 1100 1491 . + 0 ID=Phyra85553;Parent=Phyra85553;rank=2 scaffold_229 . exon 1100 1491 . + . ID=Phyra85553.2;Parent=Phyra85553;constitutive=1;ensembl_phase=1;rank=2 scaffold_229 ensembl protein_coding_gene 7183 7794 . - . ID=Phyra85554;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_229000002;logic_name=jgi_phyra1 scaffold_229 ensembl transcript 7183 7794 . - . ID=Phyra85554;Parent=Phyra85554;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_229 . CDS 7183 7794 . - 0 ID=Phyra85554;Parent=Phyra85554;rank=1 scaffold_229 . exon 7183 7794 . - . ID=Phyra85554.1;Parent=Phyra85554;constitutive=1;rank=1 scaffold_229 . repeat_region 10540 36426 . ? . description=dust scaffold_229 ensembl protein_coding_gene 37123 37426 . + . ID=Phyra85555;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_229000003;logic_name=jgi_phyra1 scaffold_229 ensembl transcript 37123 37426 . + . ID=Phyra85555;Parent=Phyra85555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_229 . CDS 37123 37426 . + 0 ID=Phyra85555;Parent=Phyra85555;rank=1 scaffold_229 . exon 37123 37426 . + . ID=Phyra85555.1;Parent=Phyra85555;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_233 1 37458 scaffold_233 . biological_region 1007 1009 0.999 - . logic_name=eponine scaffold_233 . biological_region 3675 3681 0.999 + . logic_name=eponine scaffold_233 . biological_region 3756 3759 0.999 - . logic_name=eponine scaffold_233 . biological_region 3809 3814 0.999 - . logic_name=eponine scaffold_233 . biological_region 6396 6398 0.999 + . logic_name=eponine scaffold_233 . biological_region 8658 8662 0.999 + . logic_name=eponine scaffold_233 ensembl protein_coding_gene 47 2259 . + . ID=Phyra85558;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_233000001;logic_name=jgi_phyra1 scaffold_233 ensembl transcript 47 2259 . + . ID=Phyra85558;Parent=Phyra85558;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_233 . CDS 47 394 . + 0 ID=Phyra85558;Parent=Phyra85558;rank=1 scaffold_233 . exon 47 394 . + . ID=Phyra85558.1;Parent=Phyra85558;constitutive=1;rank=1 scaffold_233 . CDS 436 2259 . + 0 ID=Phyra85558;Parent=Phyra85558;rank=2 scaffold_233 . exon 436 2259 . + . ID=Phyra85558.2;Parent=Phyra85558;constitutive=1;rank=2 scaffold_233 ensembl protein_coding_gene 3465 4885 . + . ID=Phyra85559;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_233000002;logic_name=jgi_phyra1 scaffold_233 ensembl transcript 3465 4885 . + . ID=Phyra85559;Parent=Phyra85559;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_233 . CDS 3465 3586 . + 0 ID=Phyra85559;Parent=Phyra85559;rank=1 scaffold_233 . exon 3465 3586 . + . ID=Phyra85559.1;Parent=Phyra85559;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_233 . CDS 3626 3709 . + 0 ID=Phyra85559;Parent=Phyra85559;rank=2 scaffold_233 . exon 3626 3709 . + . ID=Phyra85559.2;Parent=Phyra85559;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_233 . CDS 3796 3957 . + 0 ID=Phyra85559;Parent=Phyra85559;rank=3 scaffold_233 . exon 3796 3957 . + . ID=Phyra85559.3;Parent=Phyra85559;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_233 . CDS 3980 4145 . + 0 ID=Phyra85559;Parent=Phyra85559;rank=4 scaffold_233 . exon 3980 4145 . + . ID=Phyra85559.4;Parent=Phyra85559;constitutive=1;ensembl_phase=2;rank=4 scaffold_233 . CDS 4508 4534 . + 0 ID=Phyra85559;Parent=Phyra85559;rank=5 scaffold_233 . exon 4508 4534 . + . ID=Phyra85559.5;Parent=Phyra85559;constitutive=1;rank=5 scaffold_233 . CDS 4604 4885 . + 0 ID=Phyra85559;Parent=Phyra85559;rank=6 scaffold_233 . exon 4604 4885 . + . ID=Phyra85559.6;Parent=Phyra85559;constitutive=1;rank=6 scaffold_233 ensembl protein_coding_gene 6091 6894 . - . ID=Phyra85560;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_233000003;logic_name=jgi_phyra1 scaffold_233 ensembl transcript 6091 6894 . - . ID=Phyra85560;Parent=Phyra85560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_233 . CDS 6091 6894 . - 0 ID=Phyra85560;Parent=Phyra85560;rank=1 scaffold_233 . exon 6091 6894 . - . ID=Phyra85560.1;Parent=Phyra85560;constitutive=1;rank=1 scaffold_233 ensembl protein_coding_gene 8700 11299 . + . ID=Phyra85561;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_233000004;logic_name=jgi_phyra1 scaffold_233 ensembl transcript 8700 11299 . + . ID=Phyra85561;Parent=Phyra85561;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_233 . CDS 8700 8790 . + 0 ID=Phyra85561;Parent=Phyra85561;rank=1 scaffold_233 . exon 8700 8790 . + . ID=Phyra85561.1;Parent=Phyra85561;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_233 . CDS 9210 11299 . + 0 ID=Phyra85561;Parent=Phyra85561;rank=2 scaffold_233 . exon 9210 11299 . + . ID=Phyra85561.2;Parent=Phyra85561;constitutive=1;ensembl_phase=1;rank=2 scaffold_233 . repeat_region 10376 10396 . ? . description=trf scaffold_233 ensembl protein_coding_gene 11514 12807 . - . ID=Phyra85562;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_233000005;logic_name=jgi_phyra1 scaffold_233 ensembl transcript 11514 12807 . - . ID=Phyra85562;Parent=Phyra85562;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_233 . CDS 11514 11765 . - 0 ID=Phyra85562;Parent=Phyra85562;rank=8 scaffold_233 . exon 11514 11765 . - . ID=Phyra85562.8;Parent=Phyra85562;constitutive=1;rank=8 scaffold_233 . CDS 11836 11886 . - 0 ID=Phyra85562;Parent=Phyra85562;rank=7 scaffold_233 . exon 11836 11886 . - . ID=Phyra85562.7;Parent=Phyra85562;constitutive=1;rank=7 scaffold_233 . CDS 11959 12087 . - 0 ID=Phyra85562;Parent=Phyra85562;rank=6 scaffold_233 . exon 11959 12087 . - . ID=Phyra85562.6;Parent=Phyra85562;constitutive=1;rank=6 scaffold_233 . CDS 12150 12208 . - 0 ID=Phyra85562;Parent=Phyra85562;rank=5 scaffold_233 . exon 12150 12208 . - . ID=Phyra85562.5;Parent=Phyra85562;constitutive=1;ensembl_phase=1;rank=5 scaffold_233 . CDS 12277 12370 . - 0 ID=Phyra85562;Parent=Phyra85562;rank=4 scaffold_233 . exon 12277 12370 . - . ID=Phyra85562.4;Parent=Phyra85562;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_233 . CDS 12450 12475 . - 0 ID=Phyra85562;Parent=Phyra85562;rank=3 scaffold_233 . exon 12450 12475 . - . ID=Phyra85562.3;Parent=Phyra85562;constitutive=1;ensembl_phase=1;rank=3 scaffold_233 . CDS 12517 12607 . - 0 ID=Phyra85562;Parent=Phyra85562;rank=2 scaffold_233 . exon 12517 12607 . - . ID=Phyra85562.2;Parent=Phyra85562;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_233 . CDS 12673 12807 . - 0 ID=Phyra85562;Parent=Phyra85562;rank=1 scaffold_233 . exon 12673 12807 . - . ID=Phyra85562.1;Parent=Phyra85562;constitutive=1;rank=1 scaffold_233 ensembl protein_coding_gene 18621 21695 . + . ID=Phyra85563;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_233000006;logic_name=jgi_phyra1 scaffold_233 ensembl transcript 18621 21695 . + . ID=Phyra85563;Parent=Phyra85563;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_233 . CDS 18621 21695 . + 0 ID=Phyra85563;Parent=Phyra85563;rank=1 scaffold_233 . exon 18621 21695 . + . ID=Phyra85563.1;Parent=Phyra85563;constitutive=1;rank=1 scaffold_233 . biological_region 19192 19193 0.999 - . logic_name=eponine scaffold_233 . repeat_region 26038 26059 . ? . description=dust scaffold_233 . biological_region 26814 26821 0.999 + . logic_name=eponine scaffold_233 ensembl protein_coding_gene 25036 25559 . - . ID=Phyra85564;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_233000007;logic_name=jgi_phyra1 scaffold_233 ensembl transcript 25036 25559 . - . ID=Phyra85564;Parent=Phyra85564;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_233 . CDS 25036 25175 . - 0 ID=Phyra85564;Parent=Phyra85564;rank=2 scaffold_233 . exon 25036 25175 . - . ID=Phyra85564.2;Parent=Phyra85564;constitutive=1;ensembl_phase=1;rank=2 scaffold_233 . CDS 25283 25559 . - 0 ID=Phyra85564;Parent=Phyra85564;rank=1 scaffold_233 . exon 25283 25559 . - . ID=Phyra85564.1;Parent=Phyra85564;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_233 ensembl protein_coding_gene 26114 26936 . + . ID=Phyra85565;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_233000008;logic_name=jgi_phyra1 scaffold_233 ensembl transcript 26114 26936 . + . ID=Phyra85565;Parent=Phyra85565;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_233 . CDS 26114 26147 . + 0 ID=Phyra85565;Parent=Phyra85565;rank=1 scaffold_233 . exon 26114 26147 . + . ID=Phyra85565.1;Parent=Phyra85565;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_233 . CDS 26398 26683 . + 0 ID=Phyra85565;Parent=Phyra85565;rank=2 scaffold_233 . exon 26398 26683 . + . ID=Phyra85565.2;Parent=Phyra85565;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_233 . CDS 26753 26936 . + 0 ID=Phyra85565;Parent=Phyra85565;rank=3 scaffold_233 . exon 26753 26936 . + . ID=Phyra85565.3;Parent=Phyra85565;constitutive=1;ensembl_phase=2;rank=3 scaffold_233 ensembl protein_coding_gene 29214 30641 . + . ID=Phyra85566;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_233000009;logic_name=jgi_phyra1 scaffold_233 ensembl transcript 29214 30641 . + . ID=Phyra85566;Parent=Phyra85566;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_233 . CDS 29214 30641 . + 0 ID=Phyra85566;Parent=Phyra85566;rank=1 scaffold_233 . exon 29214 30641 . + . ID=Phyra85566.1;Parent=Phyra85566;constitutive=1;rank=1 scaffold_233 ensembl protein_coding_gene 30898 33691 . - . ID=Phyra85567;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_233000010;logic_name=jgi_phyra1 scaffold_233 ensembl transcript 30898 33691 . - . ID=Phyra85567;Parent=Phyra85567;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_233 . CDS 30898 31054 . - 0 ID=Phyra85567;Parent=Phyra85567;rank=10 scaffold_233 . exon 30898 31054 . - . ID=Phyra85567.10;Parent=Phyra85567;constitutive=1;ensembl_phase=2;rank=10 scaffold_233 . CDS 31127 31281 . - 0 ID=Phyra85567;Parent=Phyra85567;rank=9 scaffold_233 . exon 31127 31281 . - . ID=Phyra85567.9;Parent=Phyra85567;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_233 . CDS 31359 31424 . - 0 ID=Phyra85567;Parent=Phyra85567;rank=8 scaffold_233 . exon 31359 31424 . - . ID=Phyra85567.8;Parent=Phyra85567;constitutive=1;rank=8 scaffold_233 . CDS 31505 31612 . - 0 ID=Phyra85567;Parent=Phyra85567;rank=7 scaffold_233 . exon 31505 31612 . - . ID=Phyra85567.7;Parent=Phyra85567;constitutive=1;rank=7 scaffold_233 . CDS 31672 31798 . - 0 ID=Phyra85567;Parent=Phyra85567;rank=6 scaffold_233 . exon 31672 31798 . - . ID=Phyra85567.6;Parent=Phyra85567;constitutive=1;ensembl_phase=2;rank=6 scaffold_233 . CDS 31959 32305 . - 0 ID=Phyra85567;Parent=Phyra85567;rank=5 scaffold_233 . exon 31959 32305 . - . ID=Phyra85567.5;Parent=Phyra85567;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_233 . CDS 32565 32674 . - 0 ID=Phyra85567;Parent=Phyra85567;rank=4 scaffold_233 . exon 32565 32674 . - . ID=Phyra85567.4;Parent=Phyra85567;constitutive=1;ensembl_phase=1;rank=4 scaffold_233 . CDS 32736 32871 . - 0 ID=Phyra85567;Parent=Phyra85567;rank=3 scaffold_233 . exon 32736 32871 . - . ID=Phyra85567.3;Parent=Phyra85567;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_233 . CDS 32943 33036 . - 0 ID=Phyra85567;Parent=Phyra85567;rank=2 scaffold_233 . exon 32943 33036 . - . ID=Phyra85567.2;Parent=Phyra85567;constitutive=1;ensembl_phase=2;rank=2 scaffold_233 . CDS 33510 33691 . - 0 ID=Phyra85567;Parent=Phyra85567;rank=1 scaffold_233 . exon 33510 33691 . - . ID=Phyra85567.1;Parent=Phyra85567;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_226 1 37628 scaffold_226 . repeat_region 1893 2133 . ? . description=dust scaffold_226 . repeat_region 2715 3021 . - . description=GypsyPi-1c_LTR scaffold_226 . repeat_region 3464 3473 . ? . description=dust scaffold_226 . repeat_region 4345 4896 . ? . description=dust scaffold_226 . repeat_region 5788 28370 . ? . description=dust scaffold_226 . repeat_region 5788 28370 . ? . description=dust scaffold_226 . biological_region 29757 29764 0.999 + . logic_name=eponine scaffold_226 . biological_region 34388 34391 0.999 + . logic_name=eponine scaffold_226 ensembl protein_coding_gene 37400 37600 . - . ID=Phyra44922;biotype=protein_coding;external_name=gwEuk.226.3.1;logic_name=jgi_phyra1 scaffold_226 ensembl transcript 37400 37600 . - . ID=Phyra44922;Parent=Phyra44922;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_226 . CDS 37400 37600 . - 0 ID=Phyra44922;Parent=Phyra44922;rank=1 scaffold_226 . exon 37400 37600 . - . ID=Phyra44922.1;Parent=Phyra44922;constitutive=1;rank=1 scaffold_226 ensembl protein_coding_gene 29465 30262 . - . ID=Phyra85546;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_226000001;logic_name=jgi_phyra1 scaffold_226 ensembl transcript 29465 30262 . - . ID=Phyra85546;Parent=Phyra85546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_226 . CDS 29465 30262 . - 0 ID=Phyra85546;Parent=Phyra85546;rank=1 scaffold_226 . exon 29465 30262 . - . ID=Phyra85546.1;Parent=Phyra85546;constitutive=1;rank=1 scaffold_226 ensembl protein_coding_gene 31210 33993 . - . ID=Phyra85547;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_226000002;logic_name=jgi_phyra1 scaffold_226 ensembl transcript 31210 33993 . - . ID=Phyra85547;Parent=Phyra85547;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_226 . CDS 31210 33993 . - 0 ID=Phyra85547;Parent=Phyra85547;rank=1 scaffold_226 . exon 31210 33993 . - . ID=Phyra85547.1;Parent=Phyra85547;constitutive=1;rank=1 scaffold_226 ensembl protein_coding_gene 34229 34576 . + . ID=Phyra85548;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_226000003;logic_name=jgi_phyra1 scaffold_226 ensembl transcript 34229 34576 . + . ID=Phyra85548;Parent=Phyra85548;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_226 . CDS 34229 34576 . + 0 ID=Phyra85548;Parent=Phyra85548;rank=1 scaffold_226 . exon 34229 34576 . + . ID=Phyra85548.1;Parent=Phyra85548;constitutive=1;rank=1 scaffold_226 ensembl protein_coding_gene 35946 36401 . - . ID=Phyra85549;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_226000004;logic_name=jgi_phyra1 scaffold_226 ensembl transcript 35946 36401 . - . ID=Phyra85549;Parent=Phyra85549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_226 . CDS 35946 36401 . - 0 ID=Phyra85549;Parent=Phyra85549;rank=1 scaffold_226 . exon 35946 36401 . - . ID=Phyra85549.1;Parent=Phyra85549;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_224 1 37677 scaffold_224 . biological_region 91 95 0.999 + . logic_name=eponine scaffold_224 . repeat_region 1102 28785 . ? . description=dust scaffold_224 . repeat_region 1102 28785 . ? . description=dust scaffold_224 . biological_region 35088 35090 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_223 1 37784 scaffold_223 . biological_region 945 948 0.999 + . logic_name=eponine scaffold_223 . biological_region 3034 3035 0.999 + . logic_name=eponine scaffold_223 . repeat_region 3088 3121 . ? . description=trf scaffold_223 . repeat_region 3155 3222 . ? . description=trf scaffold_223 . repeat_region 3266 6239 . ? . description=dust scaffold_223 ensembl protein_coding_gene 37 312 . - . ID=Phyra44893;biotype=protein_coding;external_name=gwEuk.223.5.1;logic_name=jgi_phyra1 scaffold_223 ensembl transcript 37 312 . - . ID=Phyra44893;Parent=Phyra44893;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_223 . CDS 37 312 . - 0 ID=Phyra44893;Parent=Phyra44893;rank=1 scaffold_223 . exon 37 312 . - . ID=Phyra44893.1;Parent=Phyra44893;constitutive=1;rank=1 scaffold_223 ensembl protein_coding_gene 7144 11086 . - . ID=Phyra85539;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_223000001;logic_name=jgi_phyra1 scaffold_223 ensembl transcript 7144 11086 . - . ID=Phyra85539;Parent=Phyra85539;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_223 . CDS 7144 7166 . - 0 ID=Phyra85539;Parent=Phyra85539;rank=6 scaffold_223 . exon 7144 7166 . - . ID=Phyra85539.6;Parent=Phyra85539;constitutive=1;ensembl_phase=1;rank=6 scaffold_223 . CDS 7442 8411 . - 0 ID=Phyra85539;Parent=Phyra85539;rank=5 scaffold_223 . exon 7442 8411 . - . ID=Phyra85539.5;Parent=Phyra85539;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_223 . CDS 8656 10446 . - 0 ID=Phyra85539;Parent=Phyra85539;rank=4 scaffold_223 . exon 8656 10446 . - . ID=Phyra85539.4;Parent=Phyra85539;constitutive=1;rank=4 scaffold_223 . CDS 10520 10729 . - 0 ID=Phyra85539;Parent=Phyra85539;rank=3 scaffold_223 . CDS 10809 10907 . - 0 ID=Phyra85539;Parent=Phyra85539;rank=2 scaffold_223 . CDS 10973 11086 . - 0 ID=Phyra85539;Parent=Phyra85539;rank=1 scaffold_223 . exon 10520 10729 . - . ID=Phyra85539.3;Parent=Phyra85539;constitutive=1;rank=3 scaffold_223 . exon 10809 10907 . - . ID=Phyra85539.2;Parent=Phyra85539;constitutive=1;rank=2 scaffold_223 . exon 10973 11086 . - . ID=Phyra85539.1;Parent=Phyra85539;constitutive=1;rank=1 scaffold_223 . repeat_region 11546 36798 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_225 1 37867 scaffold_225 . biological_region 2904 2905 0.999 + . logic_name=eponine scaffold_225 . biological_region 2969 2975 0.999 - . logic_name=eponine scaffold_225 . biological_region 5446 5449 0.999 + . logic_name=eponine scaffold_225 . biological_region 5539 5539 0.999 - . logic_name=eponine scaffold_225 . biological_region 5630 5634 0.999 + . logic_name=eponine scaffold_225 . biological_region 5675 5675 0.999 + . logic_name=eponine scaffold_225 . biological_region 6641 6642 0.999 + . logic_name=eponine scaffold_225 . repeat_region 7214 7263 . ? . description=dust scaffold_225 . repeat_region 8014 8063 . ? . description=dust scaffold_225 . biological_region 8338 8339 0.999 - . logic_name=eponine scaffold_225 ensembl protein_coding_gene 856 3675 . - . ID=Phyra85540;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_225000001;logic_name=jgi_phyra1 scaffold_225 ensembl transcript 856 3675 . - . ID=Phyra85540;Parent=Phyra85540;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_225 . CDS 856 3675 . - 0 ID=Phyra85540;Parent=Phyra85540;rank=1 scaffold_225 . exon 856 3675 . - . ID=Phyra85540.1;Parent=Phyra85540;constitutive=1;rank=1 scaffold_225 ensembl protein_coding_gene 4986 6098 . - . ID=Phyra85541;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_225000002;logic_name=jgi_phyra1 scaffold_225 ensembl transcript 4986 6098 . - . ID=Phyra85541;Parent=Phyra85541;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_225 . CDS 4986 5007 . - 0 ID=Phyra85541;Parent=Phyra85541;rank=5 scaffold_225 . exon 4986 5007 . - . ID=Phyra85541.5;Parent=Phyra85541;constitutive=1;ensembl_phase=2;rank=5 scaffold_225 . CDS 5093 5132 . - 0 ID=Phyra85541;Parent=Phyra85541;rank=4 scaffold_225 . exon 5093 5132 . - . ID=Phyra85541.4;Parent=Phyra85541;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_225 . CDS 5157 5174 . - 0 ID=Phyra85541;Parent=Phyra85541;rank=3 scaffold_225 . exon 5157 5174 . - . ID=Phyra85541.3;Parent=Phyra85541;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_225 . CDS 5229 5888 . - 0 ID=Phyra85541;Parent=Phyra85541;rank=2 scaffold_225 . exon 5229 5888 . - . ID=Phyra85541.2;Parent=Phyra85541;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_225 . CDS 5945 6098 . - 0 ID=Phyra85541;Parent=Phyra85541;rank=1 scaffold_225 . exon 5945 6098 . - . ID=Phyra85541.1;Parent=Phyra85541;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_225 ensembl protein_coding_gene 8078 8992 . + . ID=Phyra85542;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_225000003;logic_name=jgi_phyra1 scaffold_225 ensembl transcript 8078 8992 . + . ID=Phyra85542;Parent=Phyra85542;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_225 . CDS 8078 8992 . + 0 ID=Phyra85542;Parent=Phyra85542;rank=1 scaffold_225 . exon 8078 8992 . + . ID=Phyra85542.1;Parent=Phyra85542;constitutive=1;rank=1 scaffold_225 . repeat_region 10334 10353 . ? . description=trf scaffold_225 . repeat_region 12179 12247 . ? . description=trf scaffold_225 . repeat_region 12512 12544 . ? . description=trf scaffold_225 . repeat_region 16204 16246 . ? . description=trf scaffold_225 ensembl protein_coding_gene 16459 16602 . - . ID=Phyra44900;biotype=protein_coding;external_name=gwEuk.225.2.1;logic_name=jgi_phyra1 scaffold_225 ensembl transcript 16459 16602 . - . ID=Phyra44900;Parent=Phyra44900;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_225 . CDS 16459 16602 . - 0 ID=Phyra44900;Parent=Phyra44900;rank=1 scaffold_225 . exon 16459 16602 . - . ID=Phyra44900.1;Parent=Phyra44900;constitutive=1;rank=1 scaffold_225 ensembl protein_coding_gene 10938 11978 . - . ID=Phyra85543;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_225000004;logic_name=jgi_phyra1 scaffold_225 ensembl transcript 10938 11978 . - . ID=Phyra85543;Parent=Phyra85543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_225 . CDS 10938 11978 . - 0 ID=Phyra85543;Parent=Phyra85543;rank=1 scaffold_225 . exon 10938 11978 . - . ID=Phyra85543.1;Parent=Phyra85543;constitutive=1;rank=1 scaffold_225 ensembl protein_coding_gene 13765 14718 . + . ID=Phyra85544;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_225000005;logic_name=jgi_phyra1 scaffold_225 ensembl transcript 13765 14718 . + . ID=Phyra85544;Parent=Phyra85544;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_225 . CDS 13765 14718 . + 0 ID=Phyra85544;Parent=Phyra85544;rank=1 scaffold_225 . exon 13765 14718 . + . ID=Phyra85544.1;Parent=Phyra85544;constitutive=1;rank=1 scaffold_225 . repeat_region 16608 36626 . ? . description=dust scaffold_225 . biological_region 37078 37080 0.999 + . logic_name=eponine scaffold_225 ensembl protein_coding_gene 36947 37863 . + . ID=Phyra85545;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_225000006;logic_name=jgi_phyra1 scaffold_225 ensembl transcript 36947 37863 . + . ID=Phyra85545;Parent=Phyra85545;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_225 . CDS 36947 37863 . + 0 ID=Phyra85545;Parent=Phyra85545;rank=1 scaffold_225 . exon 36947 37863 . + . ID=Phyra85545.1;Parent=Phyra85545;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_221 1 37916 scaffold_221 . repeat_region 703 710 . ? . description=dust scaffold_221 . repeat_region 3532 8724 . ? . description=dust scaffold_221 . repeat_region 9008 9016 . ? . description=dust scaffold_221 . repeat_region 9740 29354 . ? . description=dust scaffold_221 ensembl protein_coding_gene 29520 30439 . + . ID=Phyra85535;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_221000001;logic_name=jgi_phyra1 scaffold_221 ensembl transcript 29520 30439 . + . ID=Phyra85535;Parent=Phyra85535;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_221 . CDS 29520 30335 . + 0 ID=Phyra85535;Parent=Phyra85535;rank=1 scaffold_221 . exon 29520 30335 . + . ID=Phyra85535.1;Parent=Phyra85535;constitutive=1;rank=1 scaffold_221 . CDS 30428 30439 . + 0 ID=Phyra85535;Parent=Phyra85535;rank=2 scaffold_221 . exon 30428 30439 . + . ID=Phyra85535.2;Parent=Phyra85535;constitutive=1;rank=2 scaffold_221 ensembl protein_coding_gene 37493 37912 . - . ID=Phyra85536;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_221000002;logic_name=jgi_phyra1 scaffold_221 ensembl transcript 37493 37912 . - . ID=Phyra85536;Parent=Phyra85536;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_221 . CDS 37493 37912 . - 0 ID=Phyra85536;Parent=Phyra85536;rank=1 scaffold_221 . exon 37493 37912 . - . ID=Phyra85536.1;Parent=Phyra85536;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_222 1 38036 scaffold_222 . biological_region 1328 1330 0.999 - . logic_name=eponine scaffold_222 . repeat_region 1388 1439 . ? . description=trf scaffold_222 . repeat_region 1486 1536 . ? . description=dust scaffold_222 . repeat_region 1660 2268 . ? . description=dust scaffold_222 . repeat_region 2497 2509 . ? . description=dust scaffold_222 . repeat_region 3449 3641 . - . description=GypsyPi-1c_I-int scaffold_222 . repeat_region 3678 3803 . - . description=GypsyPi-1c_I-int scaffold_222 . repeat_region 3807 3862 . ? . description=dust scaffold_222 . repeat_region 4981 5065 . ? . description=trf scaffold_222 . biological_region 5629 5631 0.999 - . logic_name=eponine scaffold_222 . biological_region 6930 6933 0.999 - . logic_name=eponine scaffold_222 . biological_region 6954 6955 0.999 - . logic_name=eponine scaffold_222 . repeat_region 8336 8484 . ? . description=trf scaffold_222 . repeat_region 9175 9506 . ? . description=dust scaffold_222 ensembl protein_coding_gene 75 534 . + . ID=Phyra85537;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_222000001;logic_name=jgi_phyra1 scaffold_222 ensembl transcript 75 534 . + . ID=Phyra85537;Parent=Phyra85537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_222 . CDS 75 101 . + 0 ID=Phyra85537;Parent=Phyra85537;rank=1 scaffold_222 . exon 75 101 . + . ID=Phyra85537.1;Parent=Phyra85537;constitutive=1;rank=1 scaffold_222 . CDS 162 308 . + 0 ID=Phyra85537;Parent=Phyra85537;rank=2 scaffold_222 . exon 162 308 . + . ID=Phyra85537.2;Parent=Phyra85537;constitutive=1;rank=2 scaffold_222 . CDS 385 534 . + 0 ID=Phyra85537;Parent=Phyra85537;rank=3 scaffold_222 . exon 385 534 . + . ID=Phyra85537.3;Parent=Phyra85537;constitutive=1;rank=3 scaffold_222 ensembl protein_coding_gene 8468 10944 . - . ID=Phyra85538;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_222000002;logic_name=jgi_phyra1 scaffold_222 ensembl transcript 8468 10944 . - . ID=Phyra85538;Parent=Phyra85538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_222 . CDS 8468 9100 . - 0 ID=Phyra85538;Parent=Phyra85538;rank=3 scaffold_222 . exon 8468 9100 . - . ID=Phyra85538.3;Parent=Phyra85538;constitutive=1;rank=3 scaffold_222 . CDS 9562 9984 . - 0 ID=Phyra85538;Parent=Phyra85538;rank=2 scaffold_222 . CDS 10333 10944 . - 0 ID=Phyra85538;Parent=Phyra85538;rank=1 scaffold_222 . exon 9562 9984 . - . ID=Phyra85538.2;Parent=Phyra85538;constitutive=1;rank=2 scaffold_222 . exon 10333 10944 . - . ID=Phyra85538.1;Parent=Phyra85538;constitutive=1;rank=1 scaffold_222 . repeat_region 13965 37032 . ? . description=dust scaffold_222 . repeat_region 37377 37400 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_220 1 38171 scaffold_220 . repeat_region 1754 7425 . ? . description=dust scaffold_220 ensembl protein_coding_gene 50 786 . - . ID=Phyra85532;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_220000001;logic_name=jgi_phyra1 scaffold_220 ensembl transcript 50 786 . - . ID=Phyra85532;Parent=Phyra85532;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_220 . CDS 50 621 . - 0 ID=Phyra85532;Parent=Phyra85532;rank=2 scaffold_220 . exon 50 621 . - . ID=Phyra85532.2;Parent=Phyra85532;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_220 . CDS 749 786 . - 0 ID=Phyra85532;Parent=Phyra85532;rank=1 scaffold_220 . exon 749 786 . - . ID=Phyra85532.1;Parent=Phyra85532;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_220 . repeat_region 9752 9781 . ? . description=trf scaffold_220 . repeat_region 10413 10469 . ? . description=trf scaffold_220 . biological_region 11533 11536 0.999 + . logic_name=eponine scaffold_220 . biological_region 11769 11775 0.999 - . logic_name=eponine scaffold_220 . biological_region 11789 11794 0.999 + . logic_name=eponine scaffold_220 . biological_region 11827 11829 0.999 + . logic_name=eponine scaffold_220 . repeat_region 12084 12360 . - . description=GypsyPi-1c_I-int scaffold_220 . biological_region 12128 12136 0.999 + . logic_name=eponine scaffold_220 ensembl protein_coding_gene 12083 12322 . - . ID=Phyra44857;biotype=protein_coding;external_name=gwEuk.220.1.1;logic_name=jgi_phyra1 scaffold_220 ensembl transcript 12083 12322 . - . ID=Phyra44857;Parent=Phyra44857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_220 . CDS 12083 12322 . - 0 ID=Phyra44857;Parent=Phyra44857;rank=1 scaffold_220 . exon 12083 12322 . - . ID=Phyra44857.1;Parent=Phyra44857;constitutive=1;rank=1 scaffold_220 . repeat_region 12363 27954 . ? . description=dust scaffold_220 ensembl protein_coding_gene 28210 29048 . + . ID=Phyra85533;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_220000002;logic_name=jgi_phyra1 scaffold_220 ensembl transcript 28210 29048 . + . ID=Phyra85533;Parent=Phyra85533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_220 . CDS 28210 28835 . + 0 ID=Phyra85533;Parent=Phyra85533;rank=1 scaffold_220 . exon 28210 28835 . + . ID=Phyra85533.1;Parent=Phyra85533;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_220 . CDS 29027 29048 . + 0 ID=Phyra85533;Parent=Phyra85533;rank=2 scaffold_220 . biological_region 37366 37366 0.999 - . logic_name=eponine scaffold_220 . exon 29027 29048 . + . ID=Phyra85533.2;Parent=Phyra85533;constitutive=1;ensembl_phase=2;rank=2 scaffold_220 ensembl protein_coding_gene 34886 37417 . + . ID=Phyra85534;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_220000003;logic_name=jgi_phyra1 scaffold_220 ensembl transcript 34886 37417 . + . ID=Phyra85534;Parent=Phyra85534;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_220 . CDS 34886 37417 . + 0 ID=Phyra85534;Parent=Phyra85534;rank=1 scaffold_220 . exon 34886 37417 . + . ID=Phyra85534.1;Parent=Phyra85534;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_219 1 38187 scaffold_219 . repeat_region 2027 7783 . ? . description=dust scaffold_219 . repeat_region 9043 34960 . ? . description=dust scaffold_219 ensembl protein_coding_gene 8349 8884 . + . ID=Phyra85530;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_219000001;logic_name=jgi_phyra1 scaffold_219 ensembl transcript 8349 8884 . + . ID=Phyra85530;Parent=Phyra85530;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_219 . CDS 8349 8811 . + 0 ID=Phyra85530;Parent=Phyra85530;rank=1 scaffold_219 . exon 8349 8811 . + . ID=Phyra85530.1;Parent=Phyra85530;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_219 . CDS 8865 8884 . + 0 ID=Phyra85530;Parent=Phyra85530;rank=2 scaffold_219 . exon 8865 8884 . + . ID=Phyra85530.2;Parent=Phyra85530;constitutive=1;ensembl_phase=1;rank=2 scaffold_219 . repeat_region 9043 34960 . ? . description=dust scaffold_219 . biological_region 35500 35504 0.999 + . logic_name=eponine scaffold_219 . biological_region 36934 36938 0.999 + . logic_name=eponine scaffold_219 . biological_region 36987 36991 0.999 + . logic_name=eponine scaffold_219 . biological_region 37052 37053 0.999 - . logic_name=eponine scaffold_219 . biological_region 37088 37094 0.999 + . logic_name=eponine scaffold_219 . repeat_region 37617 38182 . + . description=GypsyPi-1c_I-int scaffold_219 ensembl protein_coding_gene 36979 38072 . + . ID=Phyra85531;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_219000002;logic_name=jgi_phyra1 scaffold_219 ensembl transcript 36979 38072 . + . ID=Phyra85531;Parent=Phyra85531;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_219 . CDS 36979 38072 . + 0 ID=Phyra85531;Parent=Phyra85531;rank=1 scaffold_219 . exon 36979 38072 . + . ID=Phyra85531.1;Parent=Phyra85531;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_218 1 38499 scaffold_218 . biological_region 1594 1596 0.999 + . logic_name=eponine scaffold_218 . repeat_region 1968 34584 . ? . description=dust scaffold_218 ensembl protein_coding_gene 713 1670 . + . ID=Phyra85528;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_218000001;logic_name=jgi_phyra1 scaffold_218 ensembl transcript 713 1670 . + . ID=Phyra85528;Parent=Phyra85528;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_218 . CDS 713 1559 . + 0 ID=Phyra85528;Parent=Phyra85528;rank=1 scaffold_218 . exon 713 1559 . + . ID=Phyra85528.1;Parent=Phyra85528;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_218 . CDS 1648 1670 . + 0 ID=Phyra85528;Parent=Phyra85528;rank=2 scaffold_218 . exon 1648 1670 . + . ID=Phyra85528.2;Parent=Phyra85528;constitutive=1;ensembl_phase=1;rank=2 scaffold_218 . repeat_region 1968 34584 . ? . description=dust scaffold_218 . biological_region 34879 34881 0.999 - . logic_name=eponine scaffold_218 . biological_region 35220 35221 0.999 + . logic_name=eponine scaffold_218 . biological_region 35604 35605 0.999 + . logic_name=eponine scaffold_218 . biological_region 35965 35967 0.999 + . logic_name=eponine scaffold_218 . repeat_region 37801 37824 . ? . description=trf scaffold_218 ensembl protein_coding_gene 35310 38208 . - . ID=Phyra85529;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_218000002;logic_name=jgi_phyra1 scaffold_218 ensembl transcript 35310 38208 . - . ID=Phyra85529;Parent=Phyra85529;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_218 . CDS 35310 36198 . - 0 ID=Phyra85529;Parent=Phyra85529;rank=4 scaffold_218 . exon 35310 36198 . - . ID=Phyra85529.4;Parent=Phyra85529;constitutive=1;ensembl_phase=2;rank=4 scaffold_218 . CDS 37144 37658 . - 0 ID=Phyra85529;Parent=Phyra85529;rank=3 scaffold_218 . exon 37144 37658 . - . ID=Phyra85529.3;Parent=Phyra85529;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_218 . CDS 37749 37827 . - 0 ID=Phyra85529;Parent=Phyra85529;rank=2 scaffold_218 . exon 37749 37827 . - . ID=Phyra85529.2;Parent=Phyra85529;constitutive=1;ensembl_phase=2;rank=2 scaffold_218 . CDS 38195 38208 . - 0 ID=Phyra85529;Parent=Phyra85529;rank=1 scaffold_218 . exon 38195 38208 . - . ID=Phyra85529.1;Parent=Phyra85529;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_216 1 38627 scaffold_216 . repeat_region 1535 1874 . ? . description=dust scaffold_216 . biological_region 2500 2503 0.999 - . logic_name=eponine scaffold_216 . biological_region 2713 2720 0.999 + . logic_name=eponine scaffold_216 . biological_region 3101 3103 0.999 + . logic_name=eponine scaffold_216 . repeat_region 3490 3517 . ? . description=trf scaffold_216 . repeat_region 3490 3519 . ? . description=dust scaffold_216 . biological_region 3915 3919 0.999 - . logic_name=eponine scaffold_216 . repeat_region 4271 34822 . ? . description=dust scaffold_216 ensembl protein_coding_gene 1347 3490 . - . ID=Phyra85526;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_216000001;logic_name=jgi_phyra1 scaffold_216 ensembl transcript 1347 3490 . - . ID=Phyra85526;Parent=Phyra85526;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_216 . CDS 1347 1361 . - 0 ID=Phyra85526;Parent=Phyra85526;rank=3 scaffold_216 . exon 1347 1361 . - . ID=Phyra85526.3;Parent=Phyra85526;constitutive=1;rank=3 scaffold_216 . CDS 1878 3198 . - 0 ID=Phyra85526;Parent=Phyra85526;rank=2 scaffold_216 . exon 1878 3198 . - . ID=Phyra85526.2;Parent=Phyra85526;constitutive=1;ensembl_phase=2;rank=2 scaffold_216 . CDS 3225 3490 . - 0 ID=Phyra85526;Parent=Phyra85526;rank=1 scaffold_216 . exon 3225 3490 . - . ID=Phyra85526.1;Parent=Phyra85526;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_216 . repeat_region 4271 34822 . ? . description=dust scaffold_216 . biological_region 37571 37573 0.999 - . logic_name=eponine scaffold_216 . repeat_region 38342 38627 . ? . description=trf scaffold_216 ensembl protein_coding_gene 37122 38198 . + . ID=Phyra85527;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_216000002;logic_name=jgi_phyra1 scaffold_216 ensembl transcript 37122 38198 . + . ID=Phyra85527;Parent=Phyra85527;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_216 . CDS 37122 38198 . + 0 ID=Phyra85527;Parent=Phyra85527;rank=1 scaffold_216 . exon 37122 38198 . + . ID=Phyra85527.1;Parent=Phyra85527;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_215 1 38810 scaffold_215 . biological_region 95 96 0.999 - . logic_name=eponine scaffold_215 . biological_region 306 306 0.999 - . logic_name=eponine scaffold_215 . biological_region 336 336 0.999 + . logic_name=eponine scaffold_215 . biological_region 357 363 0.999 + . logic_name=eponine scaffold_215 . biological_region 405 408 0.999 - . logic_name=eponine scaffold_215 . biological_region 490 493 0.999 - . logic_name=eponine scaffold_215 . repeat_region 2743 35523 . ? . description=dust scaffold_215 ensembl protein_coding_gene 223 2107 . + . ID=Phyra85524;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_215000001;logic_name=jgi_phyra1 scaffold_215 ensembl transcript 223 2107 . + . ID=Phyra85524;Parent=Phyra85524;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_215 . CDS 223 849 . + 0 ID=Phyra85524;Parent=Phyra85524;rank=1 scaffold_215 . exon 223 849 . + . ID=Phyra85524.1;Parent=Phyra85524;constitutive=1;rank=1 scaffold_215 . CDS 1041 1421 . + 0 ID=Phyra85524;Parent=Phyra85524;rank=2 scaffold_215 . exon 1041 1421 . + . ID=Phyra85524.2;Parent=Phyra85524;constitutive=1;rank=2 scaffold_215 . CDS 1495 1791 . + 0 ID=Phyra85524;Parent=Phyra85524;rank=3 scaffold_215 . exon 1495 1791 . + . ID=Phyra85524.3;Parent=Phyra85524;constitutive=1;rank=3 scaffold_215 . CDS 1856 2107 . + 0 ID=Phyra85524;Parent=Phyra85524;rank=4 scaffold_215 . exon 1856 2107 . + . ID=Phyra85524.4;Parent=Phyra85524;constitutive=1;rank=4 scaffold_215 . repeat_region 2743 35523 . ? . description=dust scaffold_215 . biological_region 37521 37522 0.999 + . logic_name=eponine scaffold_215 . biological_region 38587 38592 0.999 + . logic_name=eponine scaffold_215 . biological_region 38628 38633 0.999 - . logic_name=eponine scaffold_215 ensembl protein_coding_gene 37404 38027 . + . ID=Phyra85525;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_215000002;logic_name=jgi_phyra1 scaffold_215 ensembl transcript 37404 38027 . + . ID=Phyra85525;Parent=Phyra85525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_215 . CDS 37404 38027 . + 0 ID=Phyra85525;Parent=Phyra85525;rank=1 scaffold_215 . exon 37404 38027 . + . ID=Phyra85525.1;Parent=Phyra85525;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_214 1 39087 scaffold_214 . biological_region 1250 1252 0.999 + . logic_name=eponine scaffold_214 . repeat_region 1748 1767 . ? . description=trf scaffold_214 . repeat_region 2944 35581 . ? . description=dust scaffold_214 . repeat_region 2944 35581 . ? . description=dust scaffold_214 ensembl protein_coding_gene 35581 36009 . + . ID=Phyra44618;biotype=protein_coding;external_name=gwEuk.214.1.1;logic_name=jgi_phyra1 scaffold_214 ensembl transcript 35581 36009 . + . ID=Phyra44618;Parent=Phyra44618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_214 . CDS 35581 36009 . + 0 ID=Phyra44618;Parent=Phyra44618;rank=1 scaffold_214 . exon 35581 36009 . + . ID=Phyra44618.1;Parent=Phyra44618;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_213 1 39327 scaffold_213 . biological_region 277 280 0.999 - . logic_name=eponine scaffold_213 . biological_region 676 678 0.999 - . logic_name=eponine scaffold_213 . repeat_region 2070 2714 . ? . description=dust scaffold_213 . repeat_region 4137 33727 . ? . description=dust scaffold_213 ensembl protein_coding_gene 791 1684 . + . ID=Phyra85521;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_213000001;logic_name=jgi_phyra1 scaffold_213 ensembl transcript 791 1684 . + . ID=Phyra85521;Parent=Phyra85521;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_213 . CDS 791 1684 . + 0 ID=Phyra85521;Parent=Phyra85521;rank=1 scaffold_213 . exon 791 1684 . + . ID=Phyra85521.1;Parent=Phyra85521;constitutive=1;rank=1 scaffold_213 . repeat_region 4137 33727 . ? . description=dust scaffold_213 . repeat_region 34653 34694 . ? . description=trf scaffold_213 ensembl protein_coding_gene 36393 36817 . + . ID=Phyra85522;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_213000002;logic_name=jgi_phyra1 scaffold_213 ensembl transcript 36393 36817 . + . ID=Phyra85522;Parent=Phyra85522;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_213 . CDS 36393 36717 . + 0 ID=Phyra85522;Parent=Phyra85522;rank=1 scaffold_213 . exon 36393 36717 . + . ID=Phyra85522.1;Parent=Phyra85522;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_213 . CDS 36753 36817 . + 0 ID=Phyra85522;Parent=Phyra85522;rank=2 scaffold_213 . exon 36753 36817 . + . ID=Phyra85522.2;Parent=Phyra85522;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_212 1 39531 scaffold_212 . biological_region 825 829 0.999 + . logic_name=eponine scaffold_212 . repeat_region 1090 1666 . ? . description=dust scaffold_212 . repeat_region 4320 4362 . ? . description=trf scaffold_212 . repeat_region 4461 4507 . ? . description=trf scaffold_212 . repeat_region 4509 35813 . ? . description=dust scaffold_212 ensembl protein_coding_gene 74 4269 . + . ID=Phyra85518;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_212000001;logic_name=jgi_phyra1 scaffold_212 ensembl transcript 74 4269 . + . ID=Phyra85518;Parent=Phyra85518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_212 . CDS 74 1069 . + 0 ID=Phyra85518;Parent=Phyra85518;rank=1 scaffold_212 . exon 74 1069 . + . ID=Phyra85518.1;Parent=Phyra85518;constitutive=1;rank=1 scaffold_212 . CDS 1675 4269 . + 0 ID=Phyra85518;Parent=Phyra85518;rank=2 scaffold_212 . exon 1675 4269 . + . ID=Phyra85518.2;Parent=Phyra85518;constitutive=1;rank=2 scaffold_212 . repeat_region 4509 35813 . ? . description=dust scaffold_212 . biological_region 36669 36673 0.999 - . logic_name=eponine scaffold_212 . repeat_region 38039 38081 . ? . description=trf scaffold_212 . biological_region 39228 39231 0.999 + . logic_name=eponine scaffold_212 ensembl protein_coding_gene 36049 36514 . - . ID=Phyra85519;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_212000002;logic_name=jgi_phyra1 scaffold_212 ensembl transcript 36049 36514 . - . ID=Phyra85519;Parent=Phyra85519;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_212 . CDS 36049 36125 . - 0 ID=Phyra85519;Parent=Phyra85519;rank=2 scaffold_212 . exon 36049 36125 . - . ID=Phyra85519.2;Parent=Phyra85519;constitutive=1;ensembl_phase=1;rank=2 scaffold_212 . CDS 36217 36514 . - 0 ID=Phyra85519;Parent=Phyra85519;rank=1 scaffold_212 . exon 36217 36514 . - . ID=Phyra85519.1;Parent=Phyra85519;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_212 ensembl protein_coding_gene 38235 39494 . + . ID=Phyra85520;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_212000003;logic_name=jgi_phyra1 scaffold_212 ensembl transcript 38235 39494 . + . ID=Phyra85520;Parent=Phyra85520;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_212 . CDS 38235 39494 . + 0 ID=Phyra85520;Parent=Phyra85520;rank=1 scaffold_212 . exon 38235 39494 . + . ID=Phyra85520.1;Parent=Phyra85520;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_211 1 39602 scaffold_211 . biological_region 163 167 0.999 - . logic_name=eponine scaffold_211 . repeat_region 521 651 . ? . description=trf scaffold_211 . biological_region 626 628 0.999 - . logic_name=eponine scaffold_211 . biological_region 876 880 0.999 - . logic_name=eponine scaffold_211 . repeat_region 1274 29763 . ? . description=dust scaffold_211 . repeat_region 1274 29763 . ? . description=dust scaffold_211 . biological_region 29863 29868 0.999 + . logic_name=eponine scaffold_211 . biological_region 29880 29886 0.999 - . logic_name=eponine scaffold_211 . biological_region 29894 29899 0.999 - . logic_name=eponine scaffold_211 . biological_region 29908 29912 0.999 + . logic_name=eponine scaffold_211 . biological_region 29934 29940 0.999 + . logic_name=eponine scaffold_211 . biological_region 30008 30019 0.999 - . logic_name=eponine scaffold_211 . biological_region 30034 30036 0.999 - . logic_name=eponine scaffold_211 . biological_region 30108 30116 0.999 - . logic_name=eponine scaffold_211 . biological_region 30132 30135 0.999 - . logic_name=eponine scaffold_211 . biological_region 32812 32817 0.999 - . logic_name=eponine scaffold_211 . biological_region 34378 34383 0.999 - . logic_name=eponine scaffold_211 . biological_region 36817 36821 0.999 + . logic_name=eponine scaffold_211 . biological_region 36823 36824 0.999 - . logic_name=eponine scaffold_211 . biological_region 36855 36857 0.999 - . logic_name=eponine scaffold_211 . biological_region 37206 37212 0.999 - . logic_name=eponine scaffold_211 . repeat_region 38938 38981 . ? . description=trf scaffold_211 . biological_region 38964 38965 0.999 - . logic_name=eponine scaffold_211 . biological_region 39020 39020 0.999 + . logic_name=eponine scaffold_211 . biological_region 39314 39317 0.999 + . logic_name=eponine scaffold_211 . biological_region 39417 39420 0.999 - . logic_name=eponine scaffold_211 ensembl protein_coding_gene 31028 39544 . - . ID=Phyra85517;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_211000001;logic_name=jgi_phyra1 scaffold_211 ensembl transcript 31028 39544 . - . ID=Phyra85517;Parent=Phyra85517;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_211 . CDS 31028 31093 . - 0 ID=Phyra85517;Parent=Phyra85517;rank=5 scaffold_211 . exon 31028 31093 . - . ID=Phyra85517.5;Parent=Phyra85517;constitutive=1;rank=5 scaffold_211 . CDS 31443 31615 . - 0 ID=Phyra85517;Parent=Phyra85517;rank=4 scaffold_211 . exon 31443 31615 . - . ID=Phyra85517.4;Parent=Phyra85517;constitutive=1;ensembl_phase=1;rank=4 scaffold_211 . CDS 31835 37033 . - 0 ID=Phyra85517;Parent=Phyra85517;rank=3 scaffold_211 . exon 31835 37033 . - . ID=Phyra85517.3;Parent=Phyra85517;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_211 . CDS 37065 37187 . - 0 ID=Phyra85517;Parent=Phyra85517;rank=2 scaffold_211 . exon 37065 37187 . - . ID=Phyra85517.2;Parent=Phyra85517;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_211 . CDS 38745 39543 . - 0 ID=Phyra85517;Parent=Phyra85517;rank=1 scaffold_211 . exon 38745 39544 . - . ID=Phyra85517.1;Parent=Phyra85517;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_210 1 40133 scaffold_210 . biological_region 452 453 0.999 - . logic_name=eponine scaffold_210 . repeat_region 4500 4801 . - . description=GypsyPi-1c_LTR scaffold_210 . repeat_region 5584 39489 . ? . description=dust scaffold_210 ensembl protein_coding_gene 683 3750 . - . ID=Phyra85516;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_210000001;logic_name=jgi_phyra1 scaffold_210 ensembl transcript 683 3750 . - . ID=Phyra85516;Parent=Phyra85516;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_210 . CDS 683 1976 . - 0 ID=Phyra85516;Parent=Phyra85516;rank=2 scaffold_210 . exon 683 1976 . - . ID=Phyra85516.2;Parent=Phyra85516;constitutive=1;ensembl_phase=2;rank=2 scaffold_210 . CDS 2441 3750 . - 0 ID=Phyra85516;Parent=Phyra85516;rank=1 scaffold_210 . exon 2441 3750 . - . ID=Phyra85516.1;Parent=Phyra85516;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_210 . repeat_region 5584 39489 . ? . description=dust scaffold_210 . repeat_region 5584 39489 . ? . description=dust scaffold_210 . repeat_region 39579 39603 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_207 1 40567 scaffold_207 . repeat_region 1749 28477 . ? . description=dust scaffold_207 . repeat_region 1749 28477 . ? . description=dust scaffold_207 . biological_region 28737 28742 0.999 + . logic_name=eponine scaffold_207 . biological_region 28788 28788 0.999 + . logic_name=eponine scaffold_207 . biological_region 28885 28891 0.999 + . logic_name=eponine scaffold_207 . biological_region 28949 28954 0.999 - . logic_name=eponine scaffold_207 . biological_region 30260 30264 0.999 - . logic_name=eponine scaffold_207 ensembl protein_coding_gene 28587 29307 . + . ID=Phyra85504;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_207000001;logic_name=jgi_phyra1 scaffold_207 ensembl transcript 28587 29307 . + . ID=Phyra85504;Parent=Phyra85504;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_207 . CDS 28587 29221 . + 0 ID=Phyra85504;Parent=Phyra85504;rank=1 scaffold_207 . exon 28587 29221 . + . ID=Phyra85504.1;Parent=Phyra85504;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_207 . CDS 29298 29307 . + 0 ID=Phyra85504;Parent=Phyra85504;rank=2 scaffold_207 . exon 29298 29307 . + . ID=Phyra85504.2;Parent=Phyra85504;constitutive=1;ensembl_phase=2;rank=2 scaffold_207 ensembl protein_coding_gene 29433 30014 . - . ID=Phyra85505;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_207000002;logic_name=jgi_phyra1 scaffold_207 ensembl transcript 29433 30014 . - . ID=Phyra85505;Parent=Phyra85505;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_207 . CDS 29433 30014 . - 0 ID=Phyra85505;Parent=Phyra85505;rank=1 scaffold_207 . exon 29433 30014 . - . ID=Phyra85505.1;Parent=Phyra85505;constitutive=1;rank=1 scaffold_207 ensembl protein_coding_gene 30195 31649 . + . ID=Phyra85506;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_207000003;logic_name=jgi_phyra1 scaffold_207 ensembl transcript 30195 31649 . + . ID=Phyra85506;Parent=Phyra85506;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_207 . CDS 30195 30448 . + 0 ID=Phyra85506;Parent=Phyra85506;rank=1 scaffold_207 . exon 30195 30448 . + . ID=Phyra85506.1;Parent=Phyra85506;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_207 . CDS 30533 30847 . + 0 ID=Phyra85506;Parent=Phyra85506;rank=2 scaffold_207 . exon 30533 30847 . + . ID=Phyra85506.2;Parent=Phyra85506;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_207 . CDS 30911 31457 . + 0 ID=Phyra85506;Parent=Phyra85506;rank=3 scaffold_207 . exon 30911 31457 . + . ID=Phyra85506.3;Parent=Phyra85506;constitutive=1;ensembl_phase=2;rank=3 scaffold_207 . CDS 31569 31649 . + 0 ID=Phyra85506;Parent=Phyra85506;rank=4 scaffold_207 . exon 31569 31649 . + . ID=Phyra85506.4;Parent=Phyra85506;constitutive=1;rank=4 scaffold_207 . repeat_region 32458 32470 . ? . description=dust scaffold_207 . repeat_region 34159 34202 . ? . description=trf scaffold_207 . repeat_region 34596 34630 . ? . description=trf scaffold_207 . repeat_region 34877 34893 . ? . description=dust scaffold_207 ensembl protein_coding_gene 35972 38660 . + . ID=Phyra85507;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_207000004;logic_name=jgi_phyra1 scaffold_207 ensembl transcript 35972 38660 . + . ID=Phyra85507;Parent=Phyra85507;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_207 . CDS 35972 36584 . + 0 ID=Phyra85507;Parent=Phyra85507;rank=1 scaffold_207 . exon 35972 36584 . + . ID=Phyra85507.1;Parent=Phyra85507;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_207 . CDS 36675 37082 . + 0 ID=Phyra85507;Parent=Phyra85507;rank=2 scaffold_207 . exon 36675 37082 . + . ID=Phyra85507.2;Parent=Phyra85507;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_207 . CDS 37109 37500 . + 0 ID=Phyra85507;Parent=Phyra85507;rank=3 scaffold_207 . exon 37109 37500 . + . ID=Phyra85507.3;Parent=Phyra85507;constitutive=1;ensembl_phase=1;rank=3 scaffold_207 . CDS 37603 37827 . + 0 ID=Phyra85507;Parent=Phyra85507;rank=4 scaffold_207 . exon 37603 37827 . + . ID=Phyra85507.4;Parent=Phyra85507;constitutive=1;rank=4 scaffold_207 . CDS 38104 38167 . + 0 ID=Phyra85507;Parent=Phyra85507;rank=5 scaffold_207 . exon 38104 38167 . + . ID=Phyra85507.5;Parent=Phyra85507;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_207 . CDS 38302 38660 . + 0 ID=Phyra85507;Parent=Phyra85507;rank=6 scaffold_207 . exon 38302 38660 . + . ID=Phyra85507.6;Parent=Phyra85507;constitutive=1;ensembl_phase=1;rank=6 ##gff-version 3 ##sequence-region scaffold_209 1 40606 scaffold_209 . repeat_region 1018 7029 . ? . description=dust scaffold_209 . repeat_region 7477 7500 . ? . description=trf scaffold_209 . repeat_region 7584 7625 . ? . description=trf scaffold_209 . repeat_region 7724 7770 . ? . description=trf scaffold_209 ensembl protein_coding_gene 7035 7313 . + . ID=Phyra44319;biotype=protein_coding;external_name=gwEuk.209.1.1;logic_name=jgi_phyra1 scaffold_209 ensembl transcript 7035 7313 . + . ID=Phyra44319;Parent=Phyra44319;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_209 . CDS 7035 7313 . + 0 ID=Phyra44319;Parent=Phyra44319;rank=1 scaffold_209 . exon 7035 7313 . + . ID=Phyra44319.1;Parent=Phyra44319;constitutive=1;rank=1 scaffold_209 . repeat_region 8298 39075 . ? . description=dust scaffold_209 . repeat_region 8298 39075 . ? . description=dust scaffold_209 . biological_region 39129 39133 0.999 + . logic_name=eponine scaffold_209 . repeat_region 39243 39273 . ? . description=trf scaffold_209 . repeat_region 40553 40595 . ? . description=trf scaffold_209 ensembl protein_coding_gene 39126 40445 . - . ID=Phyra85515;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_209000001;logic_name=jgi_phyra1 scaffold_209 ensembl transcript 39126 40445 . - . ID=Phyra85515;Parent=Phyra85515;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_209 . CDS 39126 39157 . - 0 ID=Phyra85515;Parent=Phyra85515;rank=2 scaffold_209 . exon 39126 39157 . - . ID=Phyra85515.2;Parent=Phyra85515;constitutive=1;ensembl_phase=1;rank=2 scaffold_209 . CDS 39183 40443 . - 0 ID=Phyra85515;Parent=Phyra85515;rank=1 scaffold_209 . exon 39183 40445 . - . ID=Phyra85515.1;Parent=Phyra85515;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_204 1 40820 scaffold_204 . biological_region 5321 5322 0.999 + . logic_name=eponine scaffold_204 . repeat_region 5529 5832 . ? . description=trf scaffold_204 . repeat_region 6031 6106 . ? . description=trf scaffold_204 . repeat_region 6374 7069 . ? . description=trf scaffold_204 . repeat_region 7070 7119 . ? . description=dust scaffold_204 . repeat_region 7517 7592 . ? . description=trf scaffold_204 . repeat_region 7799 8094 . ? . description=trf scaffold_204 . repeat_region 8927 9040 . - . description=Gypsy-1-I_PI-int scaffold_204 . repeat_region 10094 33779 . ? . description=dust scaffold_204 . repeat_region 10094 33779 . ? . description=dust scaffold_204 . repeat_region 37987 38172 . ? . description=dust scaffold_204 . biological_region 39753 39757 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_206 1 40863 scaffold_206 . biological_region 2218 2219 0.999 - . logic_name=eponine scaffold_206 . biological_region 5475 5481 0.999 + . logic_name=eponine scaffold_206 . biological_region 5850 5850 0.999 + . logic_name=eponine scaffold_206 . biological_region 5903 5903 0.999 - . logic_name=eponine scaffold_206 . biological_region 5961 5966 0.999 - . logic_name=eponine scaffold_206 . biological_region 5984 5991 0.999 - . logic_name=eponine scaffold_206 . biological_region 6015 6016 0.999 - . logic_name=eponine scaffold_206 . repeat_region 6869 6895 . ? . description=trf scaffold_206 . biological_region 7398 7399 0.999 - . logic_name=eponine scaffold_206 ensembl protein_coding_gene 1612 3660 . + . ID=Phyra72347;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_206000001;logic_name=jgi_phyra1 scaffold_206 ensembl transcript 1612 3660 . + . ID=Phyra72347;Parent=Phyra72347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_206 . CDS 1612 3660 . + 0 ID=Phyra72347;Parent=Phyra72347;rank=1 scaffold_206 . exon 1612 3660 . + . ID=Phyra72347.1;Parent=Phyra72347;constitutive=1;rank=1 scaffold_206 ensembl protein_coding_gene 296 1411 . - . ID=Phyra85494;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_206000001;logic_name=jgi_phyra1 scaffold_206 ensembl transcript 296 1411 . - . ID=Phyra85494;Parent=Phyra85494;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_206 . CDS 296 1411 . - 0 ID=Phyra85494;Parent=Phyra85494;rank=1 scaffold_206 . exon 296 1411 . - . ID=Phyra85494.1;Parent=Phyra85494;constitutive=1;rank=1 scaffold_206 ensembl protein_coding_gene 3845 4788 . - . ID=Phyra85496;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_206000003;logic_name=jgi_phyra1 scaffold_206 ensembl transcript 3845 4788 . - . ID=Phyra85496;Parent=Phyra85496;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_206 . CDS 3845 4585 . - 0 ID=Phyra85496;Parent=Phyra85496;rank=2 scaffold_206 . exon 3845 4585 . - . ID=Phyra85496.2;Parent=Phyra85496;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_206 . CDS 4650 4788 . - 0 ID=Phyra85496;Parent=Phyra85496;rank=1 scaffold_206 . exon 4650 4788 . - . ID=Phyra85496.1;Parent=Phyra85496;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_206 ensembl protein_coding_gene 5460 6131 . - . ID=Phyra85497;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_206000004;logic_name=jgi_phyra1 scaffold_206 ensembl transcript 5460 6131 . - . ID=Phyra85497;Parent=Phyra85497;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_206 . CDS 5460 6131 . - 0 ID=Phyra85497;Parent=Phyra85497;rank=1 scaffold_206 . exon 5460 6131 . - . ID=Phyra85497.1;Parent=Phyra85497;constitutive=1;rank=1 scaffold_206 ensembl protein_coding_gene 8111 9103 . - . ID=Phyra85498;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_206000005;logic_name=jgi_phyra1 scaffold_206 ensembl transcript 8111 9103 . - . ID=Phyra85498;Parent=Phyra85498;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_206 . CDS 8111 8898 . - 0 ID=Phyra85498;Parent=Phyra85498;rank=2 scaffold_206 . exon 8111 8898 . - . ID=Phyra85498.2;Parent=Phyra85498;constitutive=1;ensembl_phase=1;rank=2 scaffold_206 . CDS 9052 9103 . - 0 ID=Phyra85498;Parent=Phyra85498;rank=1 scaffold_206 . repeat_region 9322 9330 . ? . description=dust scaffold_206 . repeat_region 15735 27183 . ? . description=dust scaffold_206 . exon 9052 9103 . - . ID=Phyra85498.1;Parent=Phyra85498;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_206 ensembl protein_coding_gene 10745 11542 . + . ID=Phyra85499;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_206000006;logic_name=jgi_phyra1 scaffold_206 ensembl transcript 10745 11542 . + . ID=Phyra85499;Parent=Phyra85499;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_206 . CDS 10745 11542 . + 0 ID=Phyra85499;Parent=Phyra85499;rank=1 scaffold_206 . exon 10745 11542 . + . ID=Phyra85499.1;Parent=Phyra85499;constitutive=1;rank=1 scaffold_206 ensembl protein_coding_gene 12607 15346 . + . ID=Phyra85500;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_206000007;logic_name=jgi_phyra1 scaffold_206 ensembl transcript 12607 15346 . + . ID=Phyra85500;Parent=Phyra85500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_206 . CDS 12607 15184 . + 0 ID=Phyra85500;Parent=Phyra85500;rank=1 scaffold_206 . exon 12607 15184 . + . ID=Phyra85500.1;Parent=Phyra85500;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_206 . CDS 15327 15346 . + 0 ID=Phyra85500;Parent=Phyra85500;rank=2 scaffold_206 . exon 15327 15346 . + . ID=Phyra85500.2;Parent=Phyra85500;constitutive=1;ensembl_phase=1;rank=2 scaffold_206 . repeat_region 15735 27183 . ? . description=dust scaffold_206 . biological_region 27580 27583 0.999 - . logic_name=eponine scaffold_206 . biological_region 27611 27614 0.999 - . logic_name=eponine scaffold_206 . biological_region 27624 27624 0.999 + . logic_name=eponine scaffold_206 . biological_region 27633 27640 0.999 + . logic_name=eponine scaffold_206 . biological_region 27652 27653 0.999 + . logic_name=eponine scaffold_206 . biological_region 27687 27688 0.999 + . logic_name=eponine scaffold_206 . biological_region 31599 31600 0.999 + . logic_name=eponine scaffold_206 . repeat_region 31842 31849 . ? . description=dust scaffold_206 ensembl protein_coding_gene 27189 27863 . + . ID=Phyra44282;biotype=protein_coding;external_name=gwEuk.206.7.1;logic_name=jgi_phyra1 scaffold_206 ensembl transcript 27189 27863 . + . ID=Phyra44282;Parent=Phyra44282;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_206 . CDS 27189 27863 . + 0 ID=Phyra44282;Parent=Phyra44282;rank=1 scaffold_206 . exon 27189 27863 . + . ID=Phyra44282.1;Parent=Phyra44282;constitutive=1;rank=1 scaffold_206 . repeat_region 35531 35665 . ? . description=trf scaffold_206 . repeat_region 35622 35681 . ? . description=trf scaffold_206 . repeat_region 35623 35794 . ? . description=trf scaffold_206 . repeat_region 37302 37405 . ? . description=trf scaffold_206 ensembl protein_coding_gene 34959 35870 . + . ID=Phyra85502;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_206000009;logic_name=jgi_phyra1 scaffold_206 ensembl transcript 34959 35870 . + . ID=Phyra85502;Parent=Phyra85502;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_206 . CDS 34959 35870 . + 0 ID=Phyra85502;Parent=Phyra85502;rank=1 scaffold_206 . exon 34959 35870 . + . ID=Phyra85502.1;Parent=Phyra85502;constitutive=1;rank=1 scaffold_206 ensembl protein_coding_gene 36231 39129 . - . ID=Phyra85503;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_206000010;logic_name=jgi_phyra1 scaffold_206 ensembl transcript 36231 39129 . - . ID=Phyra85503;Parent=Phyra85503;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_206 . CDS 36231 36374 . - 0 ID=Phyra85503;Parent=Phyra85503;rank=5 scaffold_206 . exon 36231 36374 . - . ID=Phyra85503.5;Parent=Phyra85503;constitutive=1;rank=5 scaffold_206 . CDS 36454 36552 . - 0 ID=Phyra85503;Parent=Phyra85503;rank=4 scaffold_206 . exon 36454 36552 . - . ID=Phyra85503.4;Parent=Phyra85503;constitutive=1;rank=4 scaffold_206 . CDS 36625 37473 . - 0 ID=Phyra85503;Parent=Phyra85503;rank=3 scaffold_206 . exon 36625 37473 . - . ID=Phyra85503.3;Parent=Phyra85503;constitutive=1;rank=3 scaffold_206 . CDS 37738 37894 . - 0 ID=Phyra85503;Parent=Phyra85503;rank=2 scaffold_206 . exon 37738 37894 . - . ID=Phyra85503.2;Parent=Phyra85503;constitutive=1;ensembl_phase=2;rank=2 scaffold_206 . CDS 37973 39129 . - 0 ID=Phyra85503;Parent=Phyra85503;rank=1 scaffold_206 . exon 37973 39129 . - . ID=Phyra85503.1;Parent=Phyra85503;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_205 1 41066 scaffold_205 . repeat_region 2079 2353 . + . description=(CGA)n scaffold_205 . repeat_region 2093 2180 . ? . description=trf scaffold_205 . repeat_region 2112 2272 . ? . description=trf scaffold_205 . repeat_region 2112 2272 . ? . description=trf scaffold_205 . repeat_region 2168 2288 . ? . description=trf scaffold_205 . biological_region 2212 2213 0.999 - . logic_name=eponine scaffold_205 . repeat_region 2227 2294 . ? . description=trf scaffold_205 . biological_region 2269 2270 0.999 - . logic_name=eponine scaffold_205 . biological_region 4201 4205 0.999 - . logic_name=eponine scaffold_205 . biological_region 4447 4451 0.999 + . logic_name=eponine scaffold_205 . biological_region 4947 4950 0.999 + . logic_name=eponine scaffold_205 . biological_region 6779 6780 0.999 + . logic_name=eponine scaffold_205 . repeat_region 6992 8070 . ? . description=dust scaffold_205 ensembl protein_coding_gene 369 4153 . + . ID=Phyra85491;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_205000001;logic_name=jgi_phyra1 scaffold_205 ensembl transcript 369 4153 . + . ID=Phyra85491;Parent=Phyra85491;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_205 . CDS 369 1455 . + 0 ID=Phyra85491;Parent=Phyra85491;rank=1 scaffold_205 . exon 369 1455 . + . ID=Phyra85491.1;Parent=Phyra85491;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_205 . CDS 1516 2540 . + 0 ID=Phyra85491;Parent=Phyra85491;rank=2 scaffold_205 . exon 1516 2540 . + . ID=Phyra85491.2;Parent=Phyra85491;constitutive=1;ensembl_phase=1;rank=2 scaffold_205 . CDS 3467 4153 . + 0 ID=Phyra85491;Parent=Phyra85491;rank=3 scaffold_205 . exon 3467 4153 . + . ID=Phyra85491.3;Parent=Phyra85491;constitutive=1;rank=3 scaffold_205 ensembl protein_coding_gene 9437 11233 . - . ID=Phyra85492;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_205000002;logic_name=jgi_phyra1 scaffold_205 ensembl transcript 9437 11233 . - . ID=Phyra85492;Parent=Phyra85492;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_205 . CDS 9437 10786 . - 0 ID=Phyra85492;Parent=Phyra85492;rank=3 scaffold_205 . exon 9437 10786 . - . ID=Phyra85492.3;Parent=Phyra85492;constitutive=1;rank=3 scaffold_205 . CDS 11065 11088 . - 0 ID=Phyra85492;Parent=Phyra85492;rank=2 scaffold_205 . exon 11065 11088 . - . ID=Phyra85492.2;Parent=Phyra85492;constitutive=1;rank=2 scaffold_205 . CDS 11168 11233 . - 0 ID=Phyra85492;Parent=Phyra85492;rank=1 scaffold_205 . exon 11168 11233 . - . ID=Phyra85492.1;Parent=Phyra85492;constitutive=1;rank=1 scaffold_205 ensembl protein_coding_gene 11810 12433 . - . ID=Phyra85493;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_205000003;logic_name=jgi_phyra1 scaffold_205 ensembl transcript 11810 12433 . - . ID=Phyra85493;Parent=Phyra85493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_205 . CDS 11810 12433 . - 0 ID=Phyra85493;Parent=Phyra85493;rank=1 scaffold_205 . exon 11810 12433 . - . ID=Phyra85493.1;Parent=Phyra85493;constitutive=1;rank=1 scaffold_205 . repeat_region 13564 33963 . ? . description=dust scaffold_205 . repeat_region 13564 33963 . ? . description=dust scaffold_205 . biological_region 36152 36154 0.999 - . logic_name=eponine scaffold_205 . repeat_region 37989 40008 . ? . description=dust scaffold_205 . repeat_region 40562 40589 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_202 1 41577 scaffold_202 . repeat_region 32 116 . ? . description=trf scaffold_202 . repeat_region 310 358 . ? . description=dust scaffold_202 . repeat_region 314 341 . ? . description=trf scaffold_202 . biological_region 453 454 0.999 - . logic_name=eponine scaffold_202 . biological_region 730 732 0.999 - . logic_name=eponine scaffold_202 . repeat_region 836 2068 . ? . description=dust scaffold_202 . biological_region 2218 2222 0.999 + . logic_name=eponine scaffold_202 . repeat_region 2286 2365 . ? . description=trf scaffold_202 . biological_region 2714 2719 0.999 - . logic_name=eponine scaffold_202 . repeat_region 3301 4434 . ? . description=dust scaffold_202 . repeat_region 6410 11872 . ? . description=dust scaffold_202 ensembl protein_coding_gene 2158 2943 . + . ID=Phyra85488;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_202000001;logic_name=jgi_phyra1 scaffold_202 ensembl transcript 2158 2943 . + . ID=Phyra85488;Parent=Phyra85488;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_202 . CDS 2158 2943 . + 0 ID=Phyra85488;Parent=Phyra85488;rank=1 scaffold_202 . exon 2158 2943 . + . ID=Phyra85488.1;Parent=Phyra85488;constitutive=1;rank=1 scaffold_202 ensembl protein_coding_gene 16056 17016 . + . ID=Phyra85489;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_202000002;logic_name=jgi_phyra1 scaffold_202 ensembl transcript 16056 17016 . + . ID=Phyra85489;Parent=Phyra85489;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_202 . CDS 16056 16725 . + 0 ID=Phyra85489;Parent=Phyra85489;rank=1 scaffold_202 . exon 16056 16725 . + . ID=Phyra85489.1;Parent=Phyra85489;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_202 . CDS 17012 17016 . + 0 ID=Phyra85489;Parent=Phyra85489;rank=2 scaffold_202 . repeat_region 16823 16872 . ? . description=dust scaffold_202 . repeat_region 17790 38124 . ? . description=dust scaffold_202 . exon 17012 17016 . + . ID=Phyra85489.2;Parent=Phyra85489;constitutive=1;ensembl_phase=1;rank=2 scaffold_202 . repeat_region 17790 38124 . ? . description=dust scaffold_202 . biological_region 38164 38165 0.999 + . logic_name=eponine scaffold_202 . repeat_region 38862 38903 . ? . description=trf scaffold_202 . repeat_region 39194 40287 . ? . description=dust scaffold_202 . biological_region 40937 40942 0.999 + . logic_name=eponine scaffold_202 ensembl protein_coding_gene 38279 41577 . - . ID=Phyra85490;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_202000003;logic_name=jgi_phyra1 scaffold_202 ensembl transcript 38279 41577 . - . ID=Phyra85490;Parent=Phyra85490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_202 . CDS 38279 38326 . - 0 ID=Phyra85490;Parent=Phyra85490;rank=3 scaffold_202 . exon 38279 38326 . - . ID=Phyra85490.3;Parent=Phyra85490;constitutive=1;rank=3 scaffold_202 . CDS 38385 38585 . - 0 ID=Phyra85490;Parent=Phyra85490;rank=2 scaffold_202 . exon 38385 38585 . - . ID=Phyra85490.2;Parent=Phyra85490;constitutive=1;rank=2 scaffold_202 . CDS 40308 41576 . - 0 ID=Phyra85490;Parent=Phyra85490;rank=1 scaffold_202 . exon 40308 41577 . - . ID=Phyra85490.1;Parent=Phyra85490;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_201 1 41894 scaffold_201 . biological_region 478 481 0.999 + . logic_name=eponine scaffold_201 . biological_region 546 554 0.999 - . logic_name=eponine scaffold_201 . biological_region 604 611 0.999 + . logic_name=eponine scaffold_201 . biological_region 920 922 0.999 - . logic_name=eponine scaffold_201 . biological_region 1158 1158 0.999 + . logic_name=eponine scaffold_201 . repeat_region 6061 6068 . ? . description=dust scaffold_201 ensembl protein_coding_gene 2129 3220 . + . ID=Phyra85480;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_201000001;logic_name=jgi_phyra1 scaffold_201 ensembl transcript 2129 3220 . + . ID=Phyra85480;Parent=Phyra85480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_201 . CDS 2129 2479 . + 0 ID=Phyra85480;Parent=Phyra85480;rank=1 scaffold_201 . exon 2129 2479 . + . ID=Phyra85480.1;Parent=Phyra85480;constitutive=1;rank=1 scaffold_201 . CDS 2570 3220 . + 0 ID=Phyra85480;Parent=Phyra85480;rank=2 scaffold_201 . exon 2570 3220 . + . ID=Phyra85480.2;Parent=Phyra85480;constitutive=1;rank=2 scaffold_201 ensembl protein_coding_gene 6068 8095 . + . ID=Phyra85481;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_201000002;logic_name=jgi_phyra1 scaffold_201 ensembl transcript 6068 8095 . + . ID=Phyra85481;Parent=Phyra85481;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_201 . CDS 6068 8095 . + 0 ID=Phyra85481;Parent=Phyra85481;rank=1 scaffold_201 . exon 6068 8095 . + . ID=Phyra85481.1;Parent=Phyra85481;constitutive=1;rank=1 scaffold_201 . repeat_region 9145 25939 . ? . description=dust scaffold_201 . biological_region 27654 27655 0.999 + . logic_name=eponine scaffold_201 . biological_region 28965 28966 0.999 + . logic_name=eponine scaffold_201 . repeat_region 30707 30739 . ? . description=trf scaffold_201 . biological_region 31075 31077 0.999 + . logic_name=eponine scaffold_201 ensembl protein_coding_gene 26137 27291 . + . ID=Phyra85482;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_201000003;logic_name=jgi_phyra1 scaffold_201 ensembl transcript 26137 27291 . + . ID=Phyra85482;Parent=Phyra85482;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_201 . CDS 26137 26169 . + 0 ID=Phyra85482;Parent=Phyra85482;rank=1 scaffold_201 . exon 26137 26169 . + . ID=Phyra85482.1;Parent=Phyra85482;constitutive=1;rank=1 scaffold_201 . CDS 26231 26296 . + 0 ID=Phyra85482;Parent=Phyra85482;rank=2 scaffold_201 . exon 26231 26296 . + . ID=Phyra85482.2;Parent=Phyra85482;constitutive=1;rank=2 scaffold_201 . CDS 26539 27291 . + 0 ID=Phyra85482;Parent=Phyra85482;rank=3 scaffold_201 . exon 26539 27291 . + . ID=Phyra85482.3;Parent=Phyra85482;constitutive=1;rank=3 scaffold_201 ensembl protein_coding_gene 28975 30278 . - . ID=Phyra85483;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_201000004;logic_name=jgi_phyra1 scaffold_201 ensembl transcript 28975 30278 . - . ID=Phyra85483;Parent=Phyra85483;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_201 . CDS 28975 29477 . - 0 ID=Phyra85483;Parent=Phyra85483;rank=2 scaffold_201 . exon 28975 29477 . - . ID=Phyra85483.2;Parent=Phyra85483;constitutive=1;ensembl_phase=1;rank=2 scaffold_201 . CDS 29555 30278 . - 0 ID=Phyra85483;Parent=Phyra85483;rank=1 scaffold_201 . exon 29555 30278 . - . ID=Phyra85483.1;Parent=Phyra85483;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_201 ensembl protein_coding_gene 31583 34151 . - . ID=Phyra85484;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_201000005;logic_name=jgi_phyra1 scaffold_201 ensembl transcript 31583 34151 . - . ID=Phyra85484;Parent=Phyra85484;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_201 . CDS 31583 31745 . - 0 ID=Phyra85484;Parent=Phyra85484;rank=4 scaffold_201 . exon 31583 31745 . - . ID=Phyra85484.4;Parent=Phyra85484;constitutive=1;ensembl_phase=2;rank=4 scaffold_201 . CDS 31814 32158 . - 0 ID=Phyra85484;Parent=Phyra85484;rank=3 scaffold_201 . exon 31814 32158 . - . ID=Phyra85484.3;Parent=Phyra85484;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_201 . CDS 32234 32408 . - 0 ID=Phyra85484;Parent=Phyra85484;rank=2 scaffold_201 . exon 32234 32408 . - . ID=Phyra85484.2;Parent=Phyra85484;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_201 . CDS 32486 34151 . - 0 ID=Phyra85484;Parent=Phyra85484;rank=1 scaffold_201 . exon 32486 34151 . - . ID=Phyra85484.1;Parent=Phyra85484;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_201 ensembl protein_coding_gene 36774 38285 . - . ID=Phyra85486;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_201000007;logic_name=jgi_phyra1 scaffold_201 ensembl transcript 36774 38285 . - . ID=Phyra85486;Parent=Phyra85486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_201 . CDS 36774 38285 . - 0 ID=Phyra85486;Parent=Phyra85486;rank=1 scaffold_201 . exon 36774 38285 . - . ID=Phyra85486.1;Parent=Phyra85486;constitutive=1;rank=1 scaffold_201 ensembl protein_coding_gene 41199 41858 . + . ID=Phyra85487;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_201000008;logic_name=jgi_phyra1 scaffold_201 ensembl transcript 41199 41858 . + . ID=Phyra85487;Parent=Phyra85487;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_201 . CDS 41199 41287 . + 0 ID=Phyra85487;Parent=Phyra85487;rank=1 scaffold_201 . exon 41199 41287 . + . ID=Phyra85487.1;Parent=Phyra85487;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_201 . CDS 41345 41858 . + 0 ID=Phyra85487;Parent=Phyra85487;rank=2 scaffold_201 . exon 41345 41858 . + . ID=Phyra85487.2;Parent=Phyra85487;constitutive=1;ensembl_phase=2;rank=2 scaffold_201 ensembl protein_coding_gene 34318 36684 . + . ID=Phyra97135;biotype=protein_coding;external_name=C_scaffold_201000004;logic_name=jgi_phyra1 scaffold_201 ensembl transcript 34318 36684 . + . ID=Phyra97135;Parent=Phyra97135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_201 . CDS 34318 34448 . + 0 ID=Phyra97135;Parent=Phyra97135;rank=1 scaffold_201 . exon 34318 34448 . + . ID=Phyra97135.1;Parent=Phyra97135;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_201 . CDS 34584 34767 . + 0 ID=Phyra97135;Parent=Phyra97135;rank=2 scaffold_201 . exon 34584 34767 . + . ID=Phyra97135.2;Parent=Phyra97135;constitutive=1;ensembl_phase=2;rank=2 scaffold_201 . CDS 34789 35040 . + 0 ID=Phyra97135;Parent=Phyra97135;rank=3 scaffold_201 . exon 34789 35040 . + . ID=Phyra97135.3;Parent=Phyra97135;constitutive=1;rank=3 scaffold_201 . CDS 35104 35212 . + 0 ID=Phyra97135;Parent=Phyra97135;rank=4 scaffold_201 . exon 35104 35212 . + . ID=Phyra97135.4;Parent=Phyra97135;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_201 . CDS 35252 35567 . + 0 ID=Phyra97135;Parent=Phyra97135;rank=5 scaffold_201 . exon 35252 35567 . + . ID=Phyra97135.5;Parent=Phyra97135;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_201 . CDS 36059 36071 . + 0 ID=Phyra97135;Parent=Phyra97135;rank=6 scaffold_201 . exon 36059 36071 . + . ID=Phyra97135.6;Parent=Phyra97135;constitutive=1;ensembl_phase=2;rank=6 scaffold_201 . CDS 36166 36458 . + 0 ID=Phyra97135;Parent=Phyra97135;rank=7 scaffold_201 . exon 36166 36458 . + . ID=Phyra97135.7;Parent=Phyra97135;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_201 . CDS 36591 36684 . + 0 ID=Phyra97135;Parent=Phyra97135;rank=8 scaffold_201 . exon 36591 36684 . + . ID=Phyra97135.8;Parent=Phyra97135;constitutive=1;ensembl_phase=2;rank=8 ##gff-version 3 ##sequence-region scaffold_203 1 41907 scaffold_203 . repeat_region 1339 2645 . - . description=Polinton-1_PI scaffold_203 . repeat_region 2683 2742 . - . description=Polinton-1_PI scaffold_203 . repeat_region 2741 2798 . ? . description=trf scaffold_203 . repeat_region 2741 2798 . ? . description=dust scaffold_203 . repeat_region 2893 3672 . - . description=Polinton-1_PI scaffold_203 . repeat_region 4076 4751 . - . description=Polinton-1_PI scaffold_203 . repeat_region 4433 4441 . ? . description=dust scaffold_203 . repeat_region 4754 8477 . ? . description=dust scaffold_203 . repeat_region 11079 32601 . ? . description=dust scaffold_203 . repeat_region 33682 33689 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_200 1 42065 scaffold_200 . repeat_region 43 64 . ? . description=trf scaffold_200 . biological_region 233 238 0.999 - . logic_name=eponine scaffold_200 . biological_region 413 416 0.999 - . logic_name=eponine scaffold_200 . repeat_region 1133 3601 . ? . description=dust scaffold_200 . repeat_region 7568 7575 . ? . description=dust scaffold_200 . repeat_region 7717 7892 . ? . description=trf scaffold_200 . repeat_region 7722 7894 . ? . description=trf scaffold_200 . repeat_region 7727 7891 . ? . description=trf scaffold_200 ensembl protein_coding_gene 19 619 . - . ID=Phyra85478;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_200000001;logic_name=jgi_phyra1 scaffold_200 ensembl transcript 19 619 . - . ID=Phyra85478;Parent=Phyra85478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_200 . CDS 19 619 . - 0 ID=Phyra85478;Parent=Phyra85478;rank=1 scaffold_200 . exon 19 619 . - . ID=Phyra85478.1;Parent=Phyra85478;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_200 ensembl protein_coding_gene 4586 8259 . + . ID=Phyra85479;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_200000002;logic_name=jgi_phyra1 scaffold_200 ensembl transcript 4586 8259 . + . ID=Phyra85479;Parent=Phyra85479;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_200 . CDS 4586 5205 . + 0 ID=Phyra85479;Parent=Phyra85479;rank=1 scaffold_200 . exon 4586 5205 . + . ID=Phyra85479.1;Parent=Phyra85479;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_200 . CDS 5317 6774 . + 0 ID=Phyra85479;Parent=Phyra85479;rank=2 scaffold_200 . exon 5317 6774 . + . ID=Phyra85479.2;Parent=Phyra85479;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_200 . CDS 7128 7221 . + 0 ID=Phyra85479;Parent=Phyra85479;rank=3 scaffold_200 . exon 7128 7221 . + . ID=Phyra85479.3;Parent=Phyra85479;constitutive=1;ensembl_phase=2;rank=3 scaffold_200 . CDS 7282 8259 . + 0 ID=Phyra85479;Parent=Phyra85479;rank=4 scaffold_200 . exon 7282 8259 . + . ID=Phyra85479.4;Parent=Phyra85479;constitutive=1;rank=4 scaffold_200 . repeat_region 12307 32981 . ? . description=dust scaffold_200 . repeat_region 34937 40965 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_198 1 42826 scaffold_198 . repeat_region 1443 2417 . ? . description=dust scaffold_198 . repeat_region 3590 3630 . ? . description=trf scaffold_198 . repeat_region 3590 3660 . ? . description=trf scaffold_198 . repeat_region 5222 5232 . ? . description=dust scaffold_198 . repeat_region 5236 5687 . ? . description=dust scaffold_198 . repeat_region 8217 8446 . ? . description=trf scaffold_198 ensembl protein_coding_gene 6195 7843 . - . ID=Phyra43744;biotype=protein_coding;external_name=gwEuk.198.2.1;logic_name=jgi_phyra1 scaffold_198 ensembl transcript 6195 7843 . - . ID=Phyra43744;Parent=Phyra43744;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_198 . CDS 6195 6967 . - 0 ID=Phyra43744;Parent=Phyra43744;rank=3 scaffold_198 . exon 6195 6967 . - . ID=Phyra43744.3;Parent=Phyra43744;constitutive=1;ensembl_phase=1;rank=3 scaffold_198 . CDS 7019 7313 . - 0 ID=Phyra43744;Parent=Phyra43744;rank=2 scaffold_198 . exon 7019 7313 . - . ID=Phyra43744.2;Parent=Phyra43744;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_198 . CDS 7433 7843 . - 0 ID=Phyra43744;Parent=Phyra43744;rank=1 scaffold_198 . exon 7433 7843 . - . ID=Phyra43744.1;Parent=Phyra43744;constitutive=1;rank=1 scaffold_198 . repeat_region 15922 23891 . ? . description=dust scaffold_198 . biological_region 24588 24589 0.999 + . logic_name=eponine scaffold_198 . repeat_region 24872 26110 . ? . description=dust scaffold_198 ensembl protein_coding_gene 24090 24849 . - . ID=Phyra85472;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_198000001;logic_name=jgi_phyra1 scaffold_198 ensembl transcript 24090 24849 . - . ID=Phyra85472;Parent=Phyra85472;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_198 . CDS 24090 24093 . - 0 ID=Phyra85472;Parent=Phyra85472;rank=2 scaffold_198 . exon 24090 24093 . - . ID=Phyra85472.2;Parent=Phyra85472;constitutive=1;ensembl_phase=2;rank=2 scaffold_198 . CDS 24137 24849 . - 0 ID=Phyra85472;Parent=Phyra85472;rank=1 scaffold_198 . exon 24137 24849 . - . ID=Phyra85472.1;Parent=Phyra85472;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_198 . repeat_region 27632 31808 . - . description=Gypsy-1-I_PI-int scaffold_198 . repeat_region 35401 35408 . ? . description=dust scaffold_198 . repeat_region 36573 36582 . ? . description=dust scaffold_198 . repeat_region 37410 39330 . ? . description=dust scaffold_198 . repeat_region 39331 40087 . + . description=GypsyPi-1c_I-int scaffold_198 . repeat_region 40088 41879 . ? . description=dust scaffold_198 . repeat_region 41960 41968 . ? . description=dust scaffold_198 . repeat_region 42458 42466 . ? . description=dust scaffold_198 . repeat_region 42468 42498 . ? . description=trf scaffold_198 . repeat_region 42486 42536 . ? . description=trf scaffold_198 . repeat_region 42529 42825 . ? . description=dust scaffold_198 . repeat_region 42529 42826 . ? . description=trf scaffold_198 ensembl protein_coding_gene 37085 37399 . - . ID=Phyra72346;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_198000001;logic_name=jgi_phyra1 scaffold_198 ensembl transcript 37085 37399 . - . ID=Phyra72346;Parent=Phyra72346;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_198 . CDS 37085 37399 . - 0 ID=Phyra72346;Parent=Phyra72346;rank=1 scaffold_198 . exon 37085 37399 . - . ID=Phyra72346.1;Parent=Phyra72346;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_199 1 42858 scaffold_199 . repeat_region 1241 32779 . ? . description=dust scaffold_199 . repeat_region 1241 32779 . ? . description=dust scaffold_199 . repeat_region 32780 32921 . ? . description=trf scaffold_199 . repeat_region 32780 32921 . ? . description=trf scaffold_199 . repeat_region 32833 33149 . ? . description=trf scaffold_199 . repeat_region 32899 32969 . ? . description=trf scaffold_199 . repeat_region 32945 33033 . ? . description=trf scaffold_199 . repeat_region 33013 33083 . ? . description=trf scaffold_199 . repeat_region 33059 33180 . ? . description=trf scaffold_199 . repeat_region 33158 33228 . ? . description=trf scaffold_199 . repeat_region 33206 33377 . ? . description=trf scaffold_199 . repeat_region 33208 33377 . ? . description=trf scaffold_199 . biological_region 35842 35844 0.999 + . logic_name=eponine scaffold_199 . repeat_region 38913 39092 . ? . description=dust scaffold_199 . repeat_region 40964 41410 . ? . description=dust scaffold_199 ensembl protein_coding_gene 35686 36297 . - . ID=Phyra85474;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_199000001;logic_name=jgi_phyra1 scaffold_199 ensembl transcript 35686 36297 . - . ID=Phyra85474;Parent=Phyra85474;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_199 . CDS 35686 36297 . - 0 ID=Phyra85474;Parent=Phyra85474;rank=1 scaffold_199 . exon 35686 36297 . - . ID=Phyra85474.1;Parent=Phyra85474;constitutive=1;rank=1 scaffold_199 ensembl protein_coding_gene 36928 37629 . - . ID=Phyra85475;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_199000002;logic_name=jgi_phyra1 scaffold_199 ensembl transcript 36928 37629 . - . ID=Phyra85475;Parent=Phyra85475;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_199 . CDS 36928 37629 . - 0 ID=Phyra85475;Parent=Phyra85475;rank=1 scaffold_199 . exon 36928 37629 . - . ID=Phyra85475.1;Parent=Phyra85475;constitutive=1;rank=1 scaffold_199 ensembl protein_coding_gene 37843 39203 . + . ID=Phyra85476;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_199000003;logic_name=jgi_phyra1 scaffold_199 ensembl transcript 37843 39203 . + . ID=Phyra85476;Parent=Phyra85476;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_199 . CDS 37843 38053 . + 0 ID=Phyra85476;Parent=Phyra85476;rank=1 scaffold_199 . exon 37843 38053 . + . ID=Phyra85476.1;Parent=Phyra85476;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_199 . CDS 38102 38896 . + 0 ID=Phyra85476;Parent=Phyra85476;rank=2 scaffold_199 . exon 38102 38896 . + . ID=Phyra85476.2;Parent=Phyra85476;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_199 . CDS 39160 39203 . + 0 ID=Phyra85476;Parent=Phyra85476;rank=3 scaffold_199 . exon 39160 39203 . + . ID=Phyra85476.3;Parent=Phyra85476;constitutive=1;ensembl_phase=1;rank=3 scaffold_199 ensembl protein_coding_gene 40747 41930 . - . ID=Phyra85477;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_199000004;logic_name=jgi_phyra1 scaffold_199 ensembl transcript 40747 41930 . - . ID=Phyra85477;Parent=Phyra85477;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_199 . CDS 40747 40928 . - 0 ID=Phyra85477;Parent=Phyra85477;rank=2 scaffold_199 . exon 40747 40928 . - . ID=Phyra85477.2;Parent=Phyra85477;constitutive=1;ensembl_phase=1;rank=2 scaffold_199 . CDS 41444 41930 . - 0 ID=Phyra85477;Parent=Phyra85477;rank=1 scaffold_199 . exon 41444 41930 . - . ID=Phyra85477.1;Parent=Phyra85477;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_197 1 43000 scaffold_197 . biological_region 652 656 0.999 - . logic_name=eponine scaffold_197 . repeat_region 2407 34494 . ? . description=dust scaffold_197 . repeat_region 2407 34494 . ? . description=dust scaffold_197 . repeat_region 2407 34494 . ? . description=dust scaffold_197 . biological_region 35318 35321 0.999 - . logic_name=eponine scaffold_197 . repeat_region 35464 35661 . ? . description=trf scaffold_197 . repeat_region 36090 37574 . ? . description=dust scaffold_197 . repeat_region 38538 41953 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_196 1 43483 scaffold_196 . biological_region 4286 4287 0.999 + . logic_name=eponine scaffold_196 . biological_region 4378 4381 0.999 + . logic_name=eponine scaffold_196 . biological_region 4395 4397 0.999 - . logic_name=eponine scaffold_196 . biological_region 6143 6143 0.999 + . logic_name=eponine scaffold_196 . repeat_region 8412 8461 . ? . description=dust scaffold_196 . biological_region 8500 8506 0.999 + . logic_name=eponine scaffold_196 . biological_region 8541 8546 0.999 - . logic_name=eponine scaffold_196 ensembl snRNA_gene 8320 8504 . + . ID=EPrPRAG00000000017;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_196 ensembl snRNA 8320 8504 . + . ID=EPrPRAT00000000017;Parent=EPrPRAG00000000017;biotype=snRNA;logic_name=ncrna_eg scaffold_196 ensembl snRNA_gene 7801 7990 . + . ID=EPrPRAG00000000022;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_196 ensembl snRNA 7801 7990 . + . ID=EPrPRAT00000000022;Parent=EPrPRAG00000000022;biotype=snRNA;logic_name=ncrna_eg scaffold_196 ensembl snRNA_gene 7801 7990 . + . ID=EPrPRAG00000000122;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_196 ensembl snRNA 7801 7990 . + . ID=EPrPRAT00000000122;Parent=EPrPRAG00000000122;biotype=snRNA;logic_name=ncrna_eg scaffold_196 . exon 8320 8504 . + . ID=EPrPRAE00000000017;Parent=EPrPRAT00000000017;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_196 . exon 7801 7990 . + . ID=EPrPRAE00000000022;Parent=EPrPRAT00000000022;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_196 . exon 7801 7990 . + . ID=EPrPRAE00000000122;Parent=EPrPRAT00000000122;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_196 ensembl protein_coding_gene 1252 1989 . + . ID=Phyra72344;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_196000001;logic_name=jgi_phyra1 scaffold_196 ensembl transcript 1252 1989 . + . ID=Phyra72344;Parent=Phyra72344;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_196 . CDS 1252 1989 . + 0 ID=Phyra72344;Parent=Phyra72344;rank=1 scaffold_196 . exon 1252 1989 . + . ID=Phyra72344.1;Parent=Phyra72344;constitutive=1;rank=1 scaffold_196 ensembl protein_coding_gene 2944 3666 . - . ID=Phyra72345;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_196000002;logic_name=jgi_phyra1 scaffold_196 ensembl transcript 2944 3666 . - . ID=Phyra72345;Parent=Phyra72345;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_196 . CDS 2944 3666 . - 0 ID=Phyra72345;Parent=Phyra72345;rank=1 scaffold_196 . exon 2944 3666 . - . ID=Phyra72345.1;Parent=Phyra72345;constitutive=1;rank=1 scaffold_196 ensembl protein_coding_gene 4160 6866 . + . ID=Phyra85469;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_196000003;logic_name=jgi_phyra1 scaffold_196 ensembl transcript 4160 6866 . + . ID=Phyra85469;Parent=Phyra85469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_196 . CDS 4160 4459 . + 0 ID=Phyra85469;Parent=Phyra85469;rank=1 scaffold_196 . exon 4160 4459 . + . ID=Phyra85469.1;Parent=Phyra85469;constitutive=1;rank=1 scaffold_196 . CDS 4527 6866 . + 0 ID=Phyra85469;Parent=Phyra85469;rank=2 scaffold_196 . exon 4527 6866 . + . ID=Phyra85469.2;Parent=Phyra85469;constitutive=1;rank=2 scaffold_196 ensembl protein_coding_gene 8634 14929 . + . ID=Phyra85470;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_196000004;logic_name=jgi_phyra1 scaffold_196 ensembl transcript 8634 14929 . + . ID=Phyra85470;Parent=Phyra85470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_196 . CDS 8634 10176 . + 0 ID=Phyra85470;Parent=Phyra85470;rank=1 scaffold_196 . exon 8634 10176 . + . ID=Phyra85470.1;Parent=Phyra85470;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_196 . CDS 10369 11189 . + 0 ID=Phyra85470;Parent=Phyra85470;rank=2 scaffold_196 . CDS 11323 12401 . + 0 ID=Phyra85470;Parent=Phyra85470;rank=3 scaffold_196 . CDS 13956 14866 . + 0 ID=Phyra85470;Parent=Phyra85470;rank=4 scaffold_196 . CDS 14922 14929 . + 0 ID=Phyra85470;Parent=Phyra85470;rank=5 scaffold_196 . exon 10369 11189 . + . ID=Phyra85470.2;Parent=Phyra85470;constitutive=1;ensembl_phase=1;rank=2 scaffold_196 . exon 11323 12401 . + . ID=Phyra85470.3;Parent=Phyra85470;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_196 . exon 13956 14866 . + . ID=Phyra85470.4;Parent=Phyra85470;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_196 . exon 14922 14929 . + . ID=Phyra85470.5;Parent=Phyra85470;constitutive=1;ensembl_phase=1;rank=5 scaffold_196 . repeat_region 15049 39536 . ? . description=dust scaffold_196 . repeat_region 15049 39536 . ? . description=dust scaffold_196 . biological_region 39825 39827 0.999 + . logic_name=eponine scaffold_196 . biological_region 40149 40150 0.999 - . logic_name=eponine scaffold_196 . repeat_region 40537 41863 . ? . description=dust scaffold_196 . biological_region 42139 42141 0.999 + . logic_name=eponine scaffold_196 . biological_region 42146 42150 0.999 - . logic_name=eponine scaffold_196 . biological_region 43194 43197 0.999 - . logic_name=eponine scaffold_196 . biological_region 43430 43431 0.999 + . logic_name=eponine scaffold_196 ensembl snRNA_gene 42551 42752 . + . ID=EPrPRAG00000000094;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_196 ensembl snRNA 42551 42752 . + . ID=EPrPRAT00000000094;Parent=EPrPRAG00000000094;biotype=snRNA;logic_name=ncrna_eg scaffold_196 . exon 42551 42752 . + . ID=EPrPRAE00000000094;Parent=EPrPRAT00000000094;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_196 ensembl protein_coding_gene 40127 42411 . + . ID=Phyra85471;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_196000005;logic_name=jgi_phyra1 scaffold_196 ensembl transcript 40127 42411 . + . ID=Phyra85471;Parent=Phyra85471;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_196 . CDS 40127 40489 . + 0 ID=Phyra85471;Parent=Phyra85471;rank=1 scaffold_196 . exon 40127 40489 . + . ID=Phyra85471.1;Parent=Phyra85471;constitutive=1;rank=1 scaffold_196 . CDS 41875 42411 . + 0 ID=Phyra85471;Parent=Phyra85471;rank=2 scaffold_196 . exon 41875 42411 . + . ID=Phyra85471.2;Parent=Phyra85471;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_194 1 43612 scaffold_194 . biological_region 698 699 0.999 + . logic_name=eponine scaffold_194 . biological_region 1370 1370 0.999 + . logic_name=eponine scaffold_194 . biological_region 1454 1456 0.999 - . logic_name=eponine scaffold_194 . biological_region 1505 1511 0.999 - . logic_name=eponine scaffold_194 . biological_region 1546 1547 0.999 + . logic_name=eponine scaffold_194 . biological_region 1583 1584 0.999 + . logic_name=eponine scaffold_194 . biological_region 1608 1613 0.999 - . logic_name=eponine scaffold_194 . biological_region 1660 1664 0.999 - . logic_name=eponine scaffold_194 . repeat_region 1816 1865 . ? . description=dust scaffold_194 . biological_region 3167 3171 0.999 - . logic_name=eponine scaffold_194 . biological_region 4253 4256 0.999 - . logic_name=eponine scaffold_194 . repeat_region 4325 4336 . ? . description=dust scaffold_194 . biological_region 7654 7659 0.999 - . logic_name=eponine scaffold_194 ensembl protein_coding_gene 108 572 . - . ID=Phyra85451;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_194000001;logic_name=jgi_phyra1 scaffold_194 ensembl transcript 108 572 . - . ID=Phyra85451;Parent=Phyra85451;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_194 . CDS 108 572 . - 0 ID=Phyra85451;Parent=Phyra85451;rank=1 scaffold_194 . exon 108 572 . - . ID=Phyra85451.1;Parent=Phyra85451;constitutive=1;rank=1 scaffold_194 ensembl protein_coding_gene 4730 5523 . + . ID=Phyra85452;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_194000002;logic_name=jgi_phyra1 scaffold_194 ensembl transcript 4730 5523 . + . ID=Phyra85452;Parent=Phyra85452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_194 . CDS 4730 4976 . + 0 ID=Phyra85452;Parent=Phyra85452;rank=1 scaffold_194 . exon 4730 4976 . + . ID=Phyra85452.1;Parent=Phyra85452;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_194 . CDS 5075 5523 . + 0 ID=Phyra85452;Parent=Phyra85452;rank=2 scaffold_194 . exon 5075 5523 . + . ID=Phyra85452.2;Parent=Phyra85452;constitutive=1;ensembl_phase=1;rank=2 scaffold_194 ensembl protein_coding_gene 7955 8918 . + . ID=Phyra85453;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_194000003;logic_name=jgi_phyra1 scaffold_194 ensembl transcript 7955 8918 . + . ID=Phyra85453;Parent=Phyra85453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_194 . CDS 7955 8639 . + 0 ID=Phyra85453;Parent=Phyra85453;rank=1 scaffold_194 . exon 7955 8639 . + . ID=Phyra85453.1;Parent=Phyra85453;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_194 . CDS 8668 8918 . + 0 ID=Phyra85453;Parent=Phyra85453;rank=2 scaffold_194 . exon 8668 8918 . + . ID=Phyra85453.2;Parent=Phyra85453;constitutive=1;ensembl_phase=1;rank=2 scaffold_194 . repeat_region 10529 10575 . ? . description=trf scaffold_194 . repeat_region 11820 11871 . ? . description=trf scaffold_194 ensembl protein_coding_gene 11623 12169 . + . ID=Phyra85454;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_194000004;logic_name=jgi_phyra1 scaffold_194 ensembl transcript 11623 12169 . + . ID=Phyra85454;Parent=Phyra85454;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_194 . CDS 11623 11785 . + 0 ID=Phyra85454;Parent=Phyra85454;rank=1 scaffold_194 . exon 11623 11785 . + . ID=Phyra85454.1;Parent=Phyra85454;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_194 . CDS 11829 12021 . + 0 ID=Phyra85454;Parent=Phyra85454;rank=2 scaffold_194 . exon 11829 12021 . + . ID=Phyra85454.2;Parent=Phyra85454;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_194 . CDS 12151 12169 . + 0 ID=Phyra85454;Parent=Phyra85454;rank=3 scaffold_194 . exon 12151 12169 . + . ID=Phyra85454.3;Parent=Phyra85454;constitutive=1;ensembl_phase=2;rank=3 scaffold_194 . repeat_region 14478 41757 . ? . description=dust scaffold_194 . repeat_region 14478 41757 . ? . description=dust scaffold_194 . biological_region 41926 41931 0.999 + . logic_name=eponine scaffold_194 . biological_region 42021 42021 0.999 - . logic_name=eponine scaffold_194 . biological_region 43069 43070 0.999 - . logic_name=eponine scaffold_194 . biological_region 43161 43162 0.999 + . logic_name=eponine scaffold_194 . biological_region 43253 43255 0.999 - . logic_name=eponine scaffold_194 ensembl protein_coding_gene 42592 43607 . + . ID=Phyra85455;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_194000005;logic_name=jgi_phyra1 scaffold_194 ensembl transcript 42592 43607 . + . ID=Phyra85455;Parent=Phyra85455;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_194 . CDS 42592 43471 . + 0 ID=Phyra85455;Parent=Phyra85455;rank=1 scaffold_194 . exon 42592 43471 . + . ID=Phyra85455.1;Parent=Phyra85455;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_194 . CDS 43526 43543 . + 0 ID=Phyra85455;Parent=Phyra85455;rank=2 scaffold_194 . exon 43526 43543 . + . ID=Phyra85455.2;Parent=Phyra85455;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_194 . CDS 43568 43607 . + 0 ID=Phyra85455;Parent=Phyra85455;rank=3 scaffold_194 . exon 43568 43607 . + . ID=Phyra85455.3;Parent=Phyra85455;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_195 1 43631 scaffold_195 . biological_region 6662 6664 0.999 - . logic_name=eponine scaffold_195 . biological_region 6952 6957 0.999 + . logic_name=eponine scaffold_195 . biological_region 7143 7146 0.999 - . logic_name=eponine scaffold_195 . biological_region 7619 7626 0.999 - . logic_name=eponine scaffold_195 . biological_region 7674 7677 0.999 + . logic_name=eponine scaffold_195 . biological_region 7708 7714 0.999 + . logic_name=eponine scaffold_195 . biological_region 7757 7759 0.999 - . logic_name=eponine scaffold_195 . biological_region 7799 7799 0.999 - . logic_name=eponine scaffold_195 . biological_region 8156 8159 0.999 - . logic_name=eponine scaffold_195 ensembl protein_coding_gene 63 6166 . - . ID=Phyra85456;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_195000001;logic_name=jgi_phyra1 scaffold_195 ensembl transcript 63 6166 . - . ID=Phyra85456;Parent=Phyra85456;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_195 . CDS 63 6166 . - 0 ID=Phyra85456;Parent=Phyra85456;rank=1 scaffold_195 . exon 63 6166 . - . ID=Phyra85456.1;Parent=Phyra85456;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_195 ensembl protein_coding_gene 6933 9000 . + . ID=Phyra85457;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_195000002;logic_name=jgi_phyra1 scaffold_195 ensembl transcript 6933 9000 . + . ID=Phyra85457;Parent=Phyra85457;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_195 . CDS 6933 9000 . + 0 ID=Phyra85457;Parent=Phyra85457;rank=1 scaffold_195 . exon 6933 9000 . + . ID=Phyra85457.1;Parent=Phyra85457;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_195 . repeat_region 10142 10161 . ? . description=trf scaffold_195 . repeat_region 10712 10750 . ? . description=trf scaffold_195 . repeat_region 10763 10796 . ? . description=dust scaffold_195 . repeat_region 10766 10792 . ? . description=trf scaffold_195 . repeat_region 10766 10795 . ? . description=trf scaffold_195 . repeat_region 16647 16688 . ? . description=trf scaffold_195 . repeat_region 16663 16700 . ? . description=trf scaffold_195 . repeat_region 16873 16914 . ? . description=trf scaffold_195 . repeat_region 16897 16920 . ? . description=trf scaffold_195 ensembl protein_coding_gene 9084 10160 . + . ID=Phyra43688;biotype=protein_coding;external_name=gwEuk.195.1.1;logic_name=jgi_phyra1 scaffold_195 ensembl transcript 9084 10160 . + . ID=Phyra43688;Parent=Phyra43688;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_195 . CDS 9084 10160 . + 0 ID=Phyra43688;Parent=Phyra43688;rank=1 scaffold_195 . exon 9084 10160 . + . ID=Phyra43688.1;Parent=Phyra43688;constitutive=1;rank=1 scaffold_195 ensembl protein_coding_gene 14263 15498 . - . ID=Phyra72342;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_195000002;logic_name=jgi_phyra1 scaffold_195 ensembl transcript 14263 15498 . - . ID=Phyra72342;Parent=Phyra72342;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_195 . CDS 14263 14314 . - 0 ID=Phyra72342;Parent=Phyra72342;rank=5 scaffold_195 . exon 14263 14314 . - . ID=Phyra72342.5;Parent=Phyra72342;constitutive=1;ensembl_phase=2;rank=5 scaffold_195 . CDS 14386 14854 . - 0 ID=Phyra72342;Parent=Phyra72342;rank=4 scaffold_195 . exon 14386 14854 . - . ID=Phyra72342.4;Parent=Phyra72342;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_195 . CDS 14923 15167 . - 0 ID=Phyra72342;Parent=Phyra72342;rank=3 scaffold_195 . exon 14923 15167 . - . ID=Phyra72342.3;Parent=Phyra72342;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_195 . CDS 15232 15347 . - 0 ID=Phyra72342;Parent=Phyra72342;rank=2 scaffold_195 . exon 15232 15347 . - . ID=Phyra72342.2;Parent=Phyra72342;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_195 . CDS 15451 15498 . - 0 ID=Phyra72342;Parent=Phyra72342;rank=1 scaffold_195 . exon 15451 15498 . - . ID=Phyra72342.1;Parent=Phyra72342;constitutive=1;rank=1 scaffold_195 ensembl protein_coding_gene 10517 11494 . + . ID=Phyra85459;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_195000004;logic_name=jgi_phyra1 scaffold_195 ensembl transcript 10517 11494 . + . ID=Phyra85459;Parent=Phyra85459;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_195 . CDS 10517 11494 . + 0 ID=Phyra85459;Parent=Phyra85459;rank=1 scaffold_195 . exon 10517 11494 . + . ID=Phyra85459.1;Parent=Phyra85459;constitutive=1;rank=1 scaffold_195 ensembl protein_coding_gene 11731 12498 . - . ID=Phyra85460;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_195000005;logic_name=jgi_phyra1 scaffold_195 ensembl transcript 11731 12498 . - . ID=Phyra85460;Parent=Phyra85460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_195 . CDS 11731 12498 . - 0 ID=Phyra85460;Parent=Phyra85460;rank=1 scaffold_195 . exon 11731 12498 . - . ID=Phyra85460.1;Parent=Phyra85460;constitutive=1;rank=1 scaffold_195 ensembl protein_coding_gene 12852 13904 . + . ID=Phyra85461;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_195000006;logic_name=jgi_phyra1 scaffold_195 ensembl transcript 12852 13904 . + . ID=Phyra85461;Parent=Phyra85461;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_195 . CDS 12852 13904 . + 0 ID=Phyra85461;Parent=Phyra85461;rank=1 scaffold_195 . exon 12852 13904 . + . ID=Phyra85461.1;Parent=Phyra85461;constitutive=1;rank=1 scaffold_195 ensembl protein_coding_gene 15800 18768 . - . ID=Phyra85463;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_195000008;logic_name=jgi_phyra1 scaffold_195 ensembl transcript 15800 18768 . - . ID=Phyra85463;Parent=Phyra85463;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_195 . CDS 15800 15945 . - 0 ID=Phyra85463;Parent=Phyra85463;rank=5 scaffold_195 . exon 15800 15945 . - . ID=Phyra85463.5;Parent=Phyra85463;constitutive=1;ensembl_phase=1;rank=5 scaffold_195 . CDS 16029 16298 . - 0 ID=Phyra85463;Parent=Phyra85463;rank=4 scaffold_195 . exon 16029 16298 . - . ID=Phyra85463.4;Parent=Phyra85463;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_195 . CDS 16543 16871 . - 0 ID=Phyra85463;Parent=Phyra85463;rank=3 scaffold_195 . exon 16543 16871 . - . ID=Phyra85463.3;Parent=Phyra85463;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_195 . CDS 17033 17880 . - 0 ID=Phyra85463;Parent=Phyra85463;rank=2 scaffold_195 . exon 17033 17880 . - . ID=Phyra85463.2;Parent=Phyra85463;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_195 . CDS 17962 18768 . - 0 ID=Phyra85463;Parent=Phyra85463;rank=1 scaffold_195 . biological_region 20106 20109 0.999 - . logic_name=eponine scaffold_195 . biological_region 20125 20127 0.999 - . logic_name=eponine scaffold_195 . exon 17962 18768 . - . ID=Phyra85463.1;Parent=Phyra85463;constitutive=1;rank=1 scaffold_195 ensembl protein_coding_gene 19247 21472 . + . ID=Phyra85464;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_195000009;logic_name=jgi_phyra1 scaffold_195 ensembl transcript 19247 21472 . + . ID=Phyra85464;Parent=Phyra85464;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_195 . CDS 19247 21472 . + 0 ID=Phyra85464;Parent=Phyra85464;rank=1 scaffold_195 . exon 19247 21472 . + . ID=Phyra85464.1;Parent=Phyra85464;constitutive=1;rank=1 scaffold_195 . repeat_region 22201 34375 . ? . description=dust scaffold_195 . repeat_region 34426 34435 . ? . description=dust scaffold_195 ensembl protein_coding_gene 40633 40980 . - . ID=Phyra72343;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_195000003;logic_name=jgi_phyra1 scaffold_195 ensembl transcript 40633 40980 . - . ID=Phyra72343;Parent=Phyra72343;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_195 . CDS 40633 40980 . - 0 ID=Phyra72343;Parent=Phyra72343;rank=1 scaffold_195 . exon 40633 40980 . - . ID=Phyra72343.1;Parent=Phyra72343;constitutive=1;rank=1 scaffold_195 ensembl protein_coding_gene 41798 42257 . - . ID=Phyra85466;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_195000011;logic_name=jgi_phyra1 scaffold_195 ensembl transcript 41798 42257 . - . ID=Phyra85466;Parent=Phyra85466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_195 . CDS 41798 42084 . - 0 ID=Phyra85466;Parent=Phyra85466;rank=2 scaffold_195 . exon 41798 42084 . - . ID=Phyra85466.2;Parent=Phyra85466;constitutive=1;ensembl_phase=1;rank=2 scaffold_195 . CDS 42146 42257 . - 0 ID=Phyra85466;Parent=Phyra85466;rank=1 scaffold_195 . exon 42146 42257 . - . ID=Phyra85466.1;Parent=Phyra85466;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_191 1 43657 scaffold_191 . repeat_region 841 848 . ? . description=dust scaffold_191 . repeat_region 2623 2652 . ? . description=trf scaffold_191 . repeat_region 2910 2921 . ? . description=dust scaffold_191 . repeat_region 3236 4313 . ? . description=dust scaffold_191 ensembl protein_coding_gene 8112 9074 . + . ID=Phyra72340;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_191000001;logic_name=jgi_phyra1 scaffold_191 ensembl transcript 8112 9074 . + . ID=Phyra72340;Parent=Phyra72340;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_191 . CDS 8112 9074 . + 0 ID=Phyra72340;Parent=Phyra72340;rank=1 scaffold_191 . exon 8112 9074 . + . ID=Phyra72340.1;Parent=Phyra72340;constitutive=1;rank=1 scaffold_191 . biological_region 9894 9900 0.999 + . logic_name=eponine scaffold_191 . repeat_region 10235 42684 . ? . description=dust scaffold_191 . repeat_region 10235 42684 . ? . description=dust scaffold_191 ensembl protein_coding_gene 42797 43648 . + . ID=Phyra85447;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_191000002;logic_name=jgi_phyra1 scaffold_191 ensembl transcript 42797 43648 . + . ID=Phyra85447;Parent=Phyra85447;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_191 . CDS 42797 43648 . + 0 ID=Phyra85447;Parent=Phyra85447;rank=1 scaffold_191 . exon 42797 43648 . + . ID=Phyra85447.1;Parent=Phyra85447;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_193 1 44117 scaffold_193 . repeat_region 234 241 . ? . description=dust scaffold_193 . repeat_region 1731 6852 . ? . description=dust scaffold_193 . biological_region 8777 8783 0.999 + . logic_name=eponine scaffold_193 . repeat_region 8945 42742 . ? . description=dust scaffold_193 . repeat_region 8945 42742 . ? . description=dust scaffold_193 . repeat_region 42887 42894 . ? . description=dust scaffold_193 ensembl protein_coding_gene 44008 44115 . + . ID=Phyra43652;biotype=protein_coding;external_name=gwEuk.193.2.1;logic_name=jgi_phyra1 scaffold_193 ensembl transcript 44008 44115 . + . ID=Phyra43652;Parent=Phyra43652;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_193 . CDS 44008 44115 . + 0 ID=Phyra43652;Parent=Phyra43652;rank=1 scaffold_193 . exon 44008 44115 . + . ID=Phyra43652.1;Parent=Phyra43652;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_192 1 44567 scaffold_192 . repeat_region 1901 2241 . ? . description=dust scaffold_192 . repeat_region 2491 2522 . ? . description=trf scaffold_192 . repeat_region 2591 2633 . ? . description=trf scaffold_192 . repeat_region 2591 2638 . ? . description=dust scaffold_192 . biological_region 3102 3106 0.999 - . logic_name=eponine scaffold_192 . biological_region 3157 3162 0.999 + . logic_name=eponine scaffold_192 . biological_region 3191 3198 0.999 + . logic_name=eponine scaffold_192 . biological_region 3222 3224 0.999 + . logic_name=eponine scaffold_192 . repeat_region 3233 3311 . ? . description=trf scaffold_192 . biological_region 3290 3295 0.999 - . logic_name=eponine scaffold_192 . repeat_region 3410 4595 . ? . description=dust scaffold_192 . biological_region 4646 4652 0.999 - . logic_name=eponine scaffold_192 . biological_region 4667 4670 0.999 + . logic_name=eponine scaffold_192 . repeat_region 4967 5685 . - . description=GypsyPi-1c_I-int scaffold_192 . biological_region 5011 5019 0.999 + . logic_name=eponine scaffold_192 . biological_region 5584 5587 0.999 + . logic_name=eponine scaffold_192 . biological_region 5702 5702 0.999 - . logic_name=eponine scaffold_192 . biological_region 5805 5808 0.999 + . logic_name=eponine scaffold_192 . biological_region 5843 5845 0.999 + . logic_name=eponine scaffold_192 . repeat_region 5958 7018 . - . description=GypsyPi-1c_I-int scaffold_192 . biological_region 6347 6350 0.999 + . logic_name=eponine scaffold_192 . repeat_region 7019 7068 . ? . description=dust scaffold_192 . repeat_region 7069 7184 . - . description=GypsyPi-1c_I-int scaffold_192 . biological_region 7628 7632 0.999 + . logic_name=eponine scaffold_192 . repeat_region 7712 7919 . ? . description=trf scaffold_192 . repeat_region 7712 7924 . ? . description=trf scaffold_192 . repeat_region 7730 7921 . ? . description=trf scaffold_192 . biological_region 7917 7924 0.999 + . logic_name=eponine scaffold_192 . biological_region 8656 8657 0.999 - . logic_name=eponine scaffold_192 . biological_region 8788 8791 0.999 - . logic_name=eponine scaffold_192 ensembl protein_coding_gene 4966 5205 . - . ID=Phyra43631;biotype=protein_coding;external_name=gwEuk.192.1.1;logic_name=jgi_phyra1 scaffold_192 ensembl transcript 4966 5205 . - . ID=Phyra43631;Parent=Phyra43631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_192 . CDS 4966 5205 . - 0 ID=Phyra43631;Parent=Phyra43631;rank=1 scaffold_192 . exon 4966 5205 . - . ID=Phyra43631.1;Parent=Phyra43631;constitutive=1;rank=1 scaffold_192 ensembl protein_coding_gene 5438 9714 . - . ID=Phyra85448;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_192000001;logic_name=jgi_phyra1 scaffold_192 ensembl transcript 5438 9714 . - . ID=Phyra85448;Parent=Phyra85448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_192 . CDS 5438 5469 . - 0 ID=Phyra85448;Parent=Phyra85448;rank=6 scaffold_192 . exon 5438 5469 . - . ID=Phyra85448.6;Parent=Phyra85448;constitutive=1;ensembl_phase=1;rank=6 scaffold_192 . CDS 5511 6926 . - 0 ID=Phyra85448;Parent=Phyra85448;rank=5 scaffold_192 . exon 5511 6926 . - . ID=Phyra85448.5;Parent=Phyra85448;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_192 . CDS 7098 8557 . - 0 ID=Phyra85448;Parent=Phyra85448;rank=4 scaffold_192 . exon 7098 8557 . - . ID=Phyra85448.4;Parent=Phyra85448;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_192 . CDS 8668 8983 . - 0 ID=Phyra85448;Parent=Phyra85448;rank=3 scaffold_192 . exon 8668 8983 . - . ID=Phyra85448.3;Parent=Phyra85448;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_192 . CDS 9044 9254 . - 0 ID=Phyra85448;Parent=Phyra85448;rank=2 scaffold_192 . CDS 9328 9714 . - 0 ID=Phyra85448;Parent=Phyra85448;rank=1 scaffold_192 . exon 9044 9254 . - . ID=Phyra85448.2;Parent=Phyra85448;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_192 . exon 9328 9714 . - . ID=Phyra85448.1;Parent=Phyra85448;constitutive=1;rank=1 scaffold_192 . repeat_region 18606 18634 . ? . description=dust scaffold_192 . repeat_region 18738 19156 . ? . description=dust scaffold_192 . repeat_region 20783 39723 . ? . description=dust scaffold_192 ensembl protein_coding_gene 19240 20496 . - . ID=Phyra85449;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_192000002;logic_name=jgi_phyra1 scaffold_192 ensembl transcript 19240 20496 . - . ID=Phyra85449;Parent=Phyra85449;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_192 . CDS 19240 20496 . - 0 ID=Phyra85449;Parent=Phyra85449;rank=1 scaffold_192 . exon 19240 20496 . - . ID=Phyra85449.1;Parent=Phyra85449;constitutive=1;rank=1 scaffold_192 . repeat_region 20783 39723 . ? . description=dust scaffold_192 . biological_region 41190 41191 0.999 - . logic_name=eponine scaffold_192 . biological_region 41351 41351 0.999 - . logic_name=eponine scaffold_192 . biological_region 42423 42425 0.999 - . logic_name=eponine scaffold_192 ensembl protein_coding_gene 39765 42395 . + . ID=Phyra85450;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_192000003;logic_name=jgi_phyra1 scaffold_192 ensembl transcript 39765 42395 . + . ID=Phyra85450;Parent=Phyra85450;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_192 . CDS 39765 39847 . + 0 ID=Phyra85450;Parent=Phyra85450;rank=1 scaffold_192 . exon 39765 39847 . + . ID=Phyra85450.1;Parent=Phyra85450;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_192 . CDS 39909 39933 . + 0 ID=Phyra85450;Parent=Phyra85450;rank=2 scaffold_192 . exon 39909 39933 . + . ID=Phyra85450.2;Parent=Phyra85450;constitutive=1;ensembl_phase=2;rank=2 scaffold_192 . CDS 40091 40375 . + 0 ID=Phyra85450;Parent=Phyra85450;rank=3 scaffold_192 . exon 40091 40375 . + . ID=Phyra85450.3;Parent=Phyra85450;constitutive=1;rank=3 scaffold_192 . CDS 40458 42395 . + 0 ID=Phyra85450;Parent=Phyra85450;rank=4 scaffold_192 . exon 40458 42395 . + . ID=Phyra85450.4;Parent=Phyra85450;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_189 1 44691 scaffold_189 . repeat_region 735 30911 . ? . description=dust scaffold_189 ensembl protein_coding_gene 77 483 . - . ID=Phyra85443;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_189000001;logic_name=jgi_phyra1 scaffold_189 ensembl transcript 77 483 . - . ID=Phyra85443;Parent=Phyra85443;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_189 . CDS 77 483 . - 0 ID=Phyra85443;Parent=Phyra85443;rank=1 scaffold_189 . exon 77 483 . - . ID=Phyra85443.1;Parent=Phyra85443;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_189 . repeat_region 735 30911 . ? . description=dust scaffold_189 . repeat_region 36825 36883 . ? . description=trf scaffold_189 . repeat_region 38562 38604 . ? . description=trf scaffold_189 . biological_region 42880 42882 0.999 + . logic_name=eponine scaffold_189 . biological_region 42905 42907 0.999 - . logic_name=eponine scaffold_189 ensembl protein_coding_gene 43703 44652 . + . ID=Phyra85444;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_189000002;logic_name=jgi_phyra1 scaffold_189 ensembl transcript 43703 44652 . + . ID=Phyra85444;Parent=Phyra85444;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_189 . CDS 43703 44382 . + 0 ID=Phyra85444;Parent=Phyra85444;rank=1 scaffold_189 . exon 43703 44382 . + . ID=Phyra85444.1;Parent=Phyra85444;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_189 . CDS 44460 44652 . + 0 ID=Phyra85444;Parent=Phyra85444;rank=2 scaffold_189 . exon 44460 44652 . + . ID=Phyra85444.2;Parent=Phyra85444;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_188 1 44714 scaffold_188 . repeat_region 2913 2957 . ? . description=trf scaffold_188 . repeat_region 2913 2957 . ? . description=trf scaffold_188 . repeat_region 4408 4486 . ? . description=trf scaffold_188 . repeat_region 5780 5790 . ? . description=dust scaffold_188 . repeat_region 8097 8107 . ? . description=dust scaffold_188 ensembl protein_coding_gene 607 1023 . - . ID=Phyra85439;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_188000001;logic_name=jgi_phyra1 scaffold_188 ensembl transcript 607 1023 . - . ID=Phyra85439;Parent=Phyra85439;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_188 . CDS 607 1023 . - 0 ID=Phyra85439;Parent=Phyra85439;rank=1 scaffold_188 . exon 607 1023 . - . ID=Phyra85439.1;Parent=Phyra85439;constitutive=1;rank=1 scaffold_188 ensembl protein_coding_gene 4402 5672 . + . ID=Phyra85440;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_188000002;logic_name=jgi_phyra1 scaffold_188 ensembl transcript 4402 5672 . + . ID=Phyra85440;Parent=Phyra85440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_188 . CDS 4402 4413 . + 0 ID=Phyra85440;Parent=Phyra85440;rank=1 scaffold_188 . exon 4402 4413 . + . ID=Phyra85440.1;Parent=Phyra85440;constitutive=1;rank=1 scaffold_188 . CDS 4487 5500 . + 0 ID=Phyra85440;Parent=Phyra85440;rank=2 scaffold_188 . exon 4487 5500 . + . ID=Phyra85440.2;Parent=Phyra85440;constitutive=1;rank=2 scaffold_188 . CDS 5628 5672 . + 0 ID=Phyra85440;Parent=Phyra85440;rank=3 scaffold_188 . exon 5628 5672 . + . ID=Phyra85440.3;Parent=Phyra85440;constitutive=1;rank=3 scaffold_188 . biological_region 11149 11151 0.999 - . logic_name=eponine scaffold_188 . biological_region 12197 12200 0.999 - . logic_name=eponine scaffold_188 . biological_region 14037 14041 0.999 - . logic_name=eponine scaffold_188 . biological_region 14223 14224 0.999 - . logic_name=eponine scaffold_188 . biological_region 15091 15092 0.999 + . logic_name=eponine scaffold_188 . repeat_region 15166 15444 . - . description=GypsyPi-1c_I-int scaffold_188 . repeat_region 15697 17949 . - . description=GypsyPi-1c_I-int scaffold_188 ensembl protein_coding_gene 13562 14314 . + . ID=Phyra85441;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_188000003;logic_name=jgi_phyra1 scaffold_188 ensembl transcript 13562 14314 . + . ID=Phyra85441;Parent=Phyra85441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_188 . CDS 13562 14314 . + 0 ID=Phyra85441;Parent=Phyra85441;rank=1 scaffold_188 . exon 13562 14314 . + . ID=Phyra85441.1;Parent=Phyra85441;constitutive=1;rank=1 scaffold_188 ensembl protein_coding_gene 15402 17670 . - . ID=Phyra85442;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_188000004;logic_name=jgi_phyra1 scaffold_188 ensembl transcript 15402 17670 . - . ID=Phyra85442;Parent=Phyra85442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_188 . CDS 15402 15408 . - 0 ID=Phyra85442;Parent=Phyra85442;rank=4 scaffold_188 . exon 15402 15408 . - . ID=Phyra85442.4;Parent=Phyra85442;constitutive=1;ensembl_phase=2;rank=4 scaffold_188 . CDS 15449 15610 . - 0 ID=Phyra85442;Parent=Phyra85442;rank=3 scaffold_188 . exon 15449 15610 . - . ID=Phyra85442.3;Parent=Phyra85442;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_188 . CDS 15698 16480 . - 0 ID=Phyra85442;Parent=Phyra85442;rank=2 scaffold_188 . exon 15698 16480 . - . ID=Phyra85442.2;Parent=Phyra85442;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_188 . CDS 16892 17670 . - 0 ID=Phyra85442;Parent=Phyra85442;rank=1 scaffold_188 . exon 16892 17670 . - . ID=Phyra85442.1;Parent=Phyra85442;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_188 . repeat_region 18338 18345 . ? . description=dust scaffold_188 . repeat_region 19096 43849 . ? . description=dust scaffold_188 . repeat_region 19096 43849 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_186 1 44992 scaffold_186 . repeat_region 1071 6977 . ? . description=dust scaffold_186 . repeat_region 7783 7835 . ? . description=trf scaffold_186 . repeat_region 7792 7835 . ? . description=trf scaffold_186 . repeat_region 8349 41217 . ? . description=dust scaffold_186 . repeat_region 8349 41217 . ? . description=dust scaffold_186 . repeat_region 8349 41217 . ? . description=dust scaffold_186 . repeat_region 42171 43820 . - . description=GypsyPi-1c_I-int scaffold_186 . repeat_region 43058 43629 . ? . description=dust scaffold_186 . repeat_region 43821 44130 . - . description=GypsyPi-1c_LTR scaffold_186 . repeat_region 44141 44149 . ? . description=dust scaffold_186 . biological_region 44567 44573 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_187 1 45093 scaffold_187 . repeat_region 2064 2078 . ? . description=dust scaffold_187 . repeat_region 3056 3115 . ? . description=trf scaffold_187 . biological_region 4342 4344 0.999 - . logic_name=eponine scaffold_187 . repeat_region 4774 4781 . ? . description=dust scaffold_187 . repeat_region 5581 5621 . ? . description=trf scaffold_187 . repeat_region 7887 7936 . ? . description=dust scaffold_187 . repeat_region 7950 7990 . ? . description=trf scaffold_187 ensembl tRNA_gene 6360 6432 . - . ID=EPrPRAG00000000048;biotype=tRNA;description=tRNA-Val for anticodon UAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_187 ensembl transcript 6360 6432 . - . ID=EPrPRAT00000000048;Parent=EPrPRAG00000000048;biotype=tRNA;logic_name=ncrna_eg scaffold_187 ensembl tRNA_gene 8729 8801 . - . ID=EPrPRAG00000000158;biotype=tRNA;description=tRNA-Val for anticodon UAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_187 ensembl transcript 8729 8801 . - . ID=EPrPRAT00000000158;Parent=EPrPRAG00000000158;biotype=tRNA;logic_name=ncrna_eg scaffold_187 . exon 6360 6432 . - . ID=EPrPRAE00000000048;Parent=EPrPRAT00000000048;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_187 . exon 8729 8801 . - . ID=EPrPRAE00000000158;Parent=EPrPRAT00000000158;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_187 ensembl protein_coding_gene 13502 14098 . + . ID=Phyra85436;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_187000001;logic_name=jgi_phyra1 scaffold_187 ensembl transcript 13502 14098 . + . ID=Phyra85436;Parent=Phyra85436;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_187 . CDS 13502 14098 . + 0 ID=Phyra85436;Parent=Phyra85436;rank=1 scaffold_187 . exon 13502 14098 . + . ID=Phyra85436.1;Parent=Phyra85436;constitutive=1;rank=1 scaffold_187 ensembl protein_coding_gene 15256 15582 . + . ID=Phyra85437;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_187000002;logic_name=jgi_phyra1 scaffold_187 ensembl transcript 15256 15582 . + . ID=Phyra85437;Parent=Phyra85437;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_187 . CDS 15256 15582 . + 0 ID=Phyra85437;Parent=Phyra85437;rank=1 scaffold_187 . exon 15256 15582 . + . ID=Phyra85437.1;Parent=Phyra85437;constitutive=1;rank=1 scaffold_187 . repeat_region 18373 41478 . ? . description=dust scaffold_187 . repeat_region 18373 41478 . ? . description=dust scaffold_187 . repeat_region 42286 42425 . ? . description=trf scaffold_187 . biological_region 42849 42852 0.999 + . logic_name=eponine scaffold_187 . repeat_region 43044 43734 . ? . description=dust scaffold_187 . biological_region 44293 44293 0.999 - . logic_name=eponine scaffold_187 . repeat_region 44772 44779 . ? . description=dust scaffold_187 . repeat_region 44862 45092 . ? . description=trf scaffold_187 . repeat_region 44865 45087 . ? . description=dust scaffold_187 ensembl protein_coding_gene 42771 44718 . + . ID=Phyra85438;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_187000003;logic_name=jgi_phyra1 scaffold_187 ensembl transcript 42771 44718 . + . ID=Phyra85438;Parent=Phyra85438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_187 . CDS 42771 43041 . + 0 ID=Phyra85438;Parent=Phyra85438;rank=1 scaffold_187 . exon 42771 43041 . + . ID=Phyra85438.1;Parent=Phyra85438;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_187 . CDS 43793 44718 . + 0 ID=Phyra85438;Parent=Phyra85438;rank=2 scaffold_187 . exon 43793 44718 . + . ID=Phyra85438.2;Parent=Phyra85438;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_185 1 45601 scaffold_185 . repeat_region 2362 2385 . ? . description=trf scaffold_185 . repeat_region 2362 2385 . ? . description=dust scaffold_185 . biological_region 2771 2774 0.999 - . logic_name=eponine scaffold_185 . repeat_region 6868 6951 . ? . description=trf scaffold_185 . repeat_region 6868 6951 . ? . description=trf scaffold_185 . repeat_region 6874 6966 . ? . description=trf scaffold_185 . repeat_region 6934 6986 . ? . description=trf scaffold_185 . repeat_region 6937 6979 . ? . description=trf scaffold_185 ensembl protein_coding_gene 290 747 . + . ID=Phyra85430;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_185000001;logic_name=jgi_phyra1 scaffold_185 ensembl transcript 290 747 . + . ID=Phyra85430;Parent=Phyra85430;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_185 . CDS 290 397 . + 0 ID=Phyra85430;Parent=Phyra85430;rank=1 scaffold_185 . exon 290 397 . + . ID=Phyra85430.1;Parent=Phyra85430;constitutive=1;rank=1 scaffold_185 . CDS 465 549 . + 0 ID=Phyra85430;Parent=Phyra85430;rank=2 scaffold_185 . exon 465 549 . + . ID=Phyra85430.2;Parent=Phyra85430;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_185 . CDS 620 747 . + 0 ID=Phyra85430;Parent=Phyra85430;rank=3 scaffold_185 . exon 620 747 . + . ID=Phyra85430.3;Parent=Phyra85430;constitutive=1;ensembl_phase=1;rank=3 scaffold_185 ensembl protein_coding_gene 2534 3205 . + . ID=Phyra85431;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_185000002;logic_name=jgi_phyra1 scaffold_185 ensembl transcript 2534 3205 . + . ID=Phyra85431;Parent=Phyra85431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_185 . CDS 2534 3205 . + 0 ID=Phyra85431;Parent=Phyra85431;rank=1 scaffold_185 . exon 2534 3205 . + . ID=Phyra85431.1;Parent=Phyra85431;constitutive=1;rank=1 scaffold_185 ensembl protein_coding_gene 3709 8244 . - . ID=Phyra85432;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_185000003;logic_name=jgi_phyra1 scaffold_185 ensembl transcript 3709 8244 . - . ID=Phyra85432;Parent=Phyra85432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_185 . CDS 3709 4550 . - 0 ID=Phyra85432;Parent=Phyra85432;rank=6 scaffold_185 . exon 3709 4550 . - . ID=Phyra85432.6;Parent=Phyra85432;constitutive=1;ensembl_phase=1;rank=6 scaffold_185 . CDS 4670 4678 . - 0 ID=Phyra85432;Parent=Phyra85432;rank=5 scaffold_185 . exon 4670 4678 . - . ID=Phyra85432.5;Parent=Phyra85432;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_185 . CDS 5085 6986 . - 0 ID=Phyra85432;Parent=Phyra85432;rank=4 scaffold_185 . exon 5085 6986 . - . ID=Phyra85432.4;Parent=Phyra85432;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_185 . CDS 7300 7320 . - 0 ID=Phyra85432;Parent=Phyra85432;rank=3 scaffold_185 . exon 7300 7320 . - . ID=Phyra85432.3;Parent=Phyra85432;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_185 . CDS 7347 7779 . - 0 ID=Phyra85432;Parent=Phyra85432;rank=2 scaffold_185 . exon 7347 7779 . - . ID=Phyra85432.2;Parent=Phyra85432;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_185 . CDS 8101 8244 . - 0 ID=Phyra85432;Parent=Phyra85432;rank=1 scaffold_185 . exon 8101 8244 . - . ID=Phyra85432.1;Parent=Phyra85432;constitutive=1;rank=1 scaffold_185 ensembl protein_coding_gene 9794 11640 . - . ID=Phyra85433;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_185000004;logic_name=jgi_phyra1 scaffold_185 ensembl transcript 9794 11640 . - . ID=Phyra85433;Parent=Phyra85433;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_185 . CDS 9794 9848 . - 0 ID=Phyra85433;Parent=Phyra85433;rank=4 scaffold_185 . exon 9794 9848 . - . ID=Phyra85433.4;Parent=Phyra85433;constitutive=1;ensembl_phase=2;rank=4 scaffold_185 . CDS 9911 10049 . - 0 ID=Phyra85433;Parent=Phyra85433;rank=3 scaffold_185 . exon 9911 10049 . - . ID=Phyra85433.3;Parent=Phyra85433;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_185 . CDS 10122 11432 . - 0 ID=Phyra85433;Parent=Phyra85433;rank=2 scaffold_185 . exon 10122 11432 . - . ID=Phyra85433.2;Parent=Phyra85433;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_185 . CDS 11535 11640 . - 0 ID=Phyra85433;Parent=Phyra85433;rank=1 scaffold_185 . exon 11535 11640 . - . ID=Phyra85433.1;Parent=Phyra85433;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_185 . repeat_region 22472 22519 . ? . description=trf scaffold_185 . repeat_region 24130 28361 . ? . description=dust scaffold_185 ensembl protein_coding_gene 23200 23700 . + . ID=Phyra85434;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_185000005;logic_name=jgi_phyra1 scaffold_185 ensembl transcript 23200 23700 . + . ID=Phyra85434;Parent=Phyra85434;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_185 . CDS 23200 23700 . + 0 ID=Phyra85434;Parent=Phyra85434;rank=1 scaffold_185 . exon 23200 23700 . + . ID=Phyra85434.1;Parent=Phyra85434;constitutive=1;rank=1 scaffold_185 . repeat_region 29240 41758 . ? . description=dust scaffold_185 . repeat_region 43063 43991 . ? . description=dust scaffold_185 ensembl protein_coding_gene 44842 45348 . + . ID=Phyra85435;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_185000006;logic_name=jgi_phyra1 scaffold_185 ensembl transcript 44842 45348 . + . ID=Phyra85435;Parent=Phyra85435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_185 . CDS 44842 45348 . + 0 ID=Phyra85435;Parent=Phyra85435;rank=1 scaffold_185 . exon 44842 45348 . + . ID=Phyra85435.1;Parent=Phyra85435;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_184 1 46249 scaffold_184 . repeat_region 2265 2272 . ? . description=dust scaffold_184 . biological_region 5808 5808 0.999 + . logic_name=eponine scaffold_184 . biological_region 6241 6242 0.999 + . logic_name=eponine scaffold_184 . biological_region 8719 8724 0.999 + . logic_name=eponine scaffold_184 . biological_region 8780 8784 0.999 + . logic_name=eponine scaffold_184 ensembl protein_coding_gene 8 1497 . - . ID=Phyra85416;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_184000001;logic_name=jgi_phyra1 scaffold_184 ensembl transcript 8 1497 . - . ID=Phyra85416;Parent=Phyra85416;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_184 . CDS 8 1497 . - 0 ID=Phyra85416;Parent=Phyra85416;rank=1 scaffold_184 . exon 8 1497 . - . ID=Phyra85416.1;Parent=Phyra85416;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_184 ensembl protein_coding_gene 5087 6340 . - . ID=Phyra85417;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_184000002;logic_name=jgi_phyra1 scaffold_184 ensembl transcript 5087 6340 . - . ID=Phyra85417;Parent=Phyra85417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_184 . CDS 5087 6340 . - 0 ID=Phyra85417;Parent=Phyra85417;rank=1 scaffold_184 . exon 5087 6340 . - . ID=Phyra85417.1;Parent=Phyra85417;constitutive=1;rank=1 scaffold_184 ensembl protein_coding_gene 7815 9305 . - . ID=Phyra85418;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_184000003;logic_name=jgi_phyra1 scaffold_184 ensembl transcript 7815 9305 . - . ID=Phyra85418;Parent=Phyra85418;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_184 . CDS 7815 9305 . - 0 ID=Phyra85418;Parent=Phyra85418;rank=1 scaffold_184 . exon 7815 9305 . - . ID=Phyra85418.1;Parent=Phyra85418;constitutive=1;rank=1 scaffold_184 ensembl protein_coding_gene 12142 13632 . + . ID=Phyra85419;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_184000004;logic_name=jgi_phyra1 scaffold_184 ensembl transcript 12142 13632 . + . ID=Phyra85419;Parent=Phyra85419;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_184 . CDS 12142 13632 . + 0 ID=Phyra85419;Parent=Phyra85419;rank=1 scaffold_184 . exon 12142 13632 . + . ID=Phyra85419.1;Parent=Phyra85419;constitutive=1;rank=1 scaffold_184 ensembl protein_coding_gene 17190 19061 . - . ID=Phyra85421;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_184000006;logic_name=jgi_phyra1 scaffold_184 ensembl transcript 17190 19061 . - . ID=Phyra85421;Parent=Phyra85421;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_184 . CDS 17190 19061 . - 0 ID=Phyra85421;Parent=Phyra85421;rank=1 scaffold_184 . exon 17190 19061 . - . ID=Phyra85421.1;Parent=Phyra85421;constitutive=1;rank=1 scaffold_184 ensembl protein_coding_gene 16455 17057 . + . ID=Phyra97122;biotype=protein_coding;external_name=C_scaffold_184000001;logic_name=jgi_phyra1 scaffold_184 ensembl transcript 16455 17057 . + . ID=Phyra97122;Parent=Phyra97122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_184 . CDS 16455 17057 . + 0 ID=Phyra97122;Parent=Phyra97122;rank=1 scaffold_184 . exon 16455 17057 . + . ID=Phyra97122.1;Parent=Phyra97122;constitutive=1;rank=1 scaffold_184 . biological_region 20727 20731 0.999 + . logic_name=eponine scaffold_184 . repeat_region 21134 21197 . ? . description=trf scaffold_184 . repeat_region 21403 21411 . ? . description=dust scaffold_184 . biological_region 21928 21929 0.999 - . logic_name=eponine scaffold_184 . biological_region 21972 21974 0.999 - . logic_name=eponine scaffold_184 ensembl protein_coding_gene 25202 28213 . - . ID=Phyra43377;biotype=protein_coding;external_name=gwEuk.184.1.1;logic_name=jgi_phyra1 scaffold_184 ensembl transcript 25202 28213 . - . ID=Phyra43377;Parent=Phyra43377;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_184 . CDS 25202 28078 . - 0 ID=Phyra43377;Parent=Phyra43377;rank=2 scaffold_184 . exon 25202 28078 . - . ID=Phyra43377.2;Parent=Phyra43377;constitutive=1;rank=2 scaffold_184 . CDS 28148 28213 . - 0 ID=Phyra43377;Parent=Phyra43377;rank=1 scaffold_184 ensembl protein_coding_gene 19367 20872 . - . ID=Phyra85422;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_184000007;logic_name=jgi_phyra1 scaffold_184 ensembl transcript 19367 20872 . - . ID=Phyra85422;Parent=Phyra85422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_184 . CDS 19367 20872 . - 0 ID=Phyra85422;Parent=Phyra85422;rank=1 scaffold_184 . exon 19367 20872 . - . ID=Phyra85422.1;Parent=Phyra85422;constitutive=1;rank=1 scaffold_184 ensembl protein_coding_gene 21631 23278 . + . ID=Phyra85423;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_184000008;logic_name=jgi_phyra1 scaffold_184 ensembl transcript 21631 23278 . + . ID=Phyra85423;Parent=Phyra85423;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_184 . CDS 21631 22256 . + 0 ID=Phyra85423;Parent=Phyra85423;rank=1 scaffold_184 . exon 21631 22256 . + . ID=Phyra85423.1;Parent=Phyra85423;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_184 . CDS 22327 23278 . + 0 ID=Phyra85423;Parent=Phyra85423;rank=2 scaffold_184 . exon 22327 23278 . + . ID=Phyra85423.2;Parent=Phyra85423;constitutive=1;ensembl_phase=2;rank=2 scaffold_184 ensembl protein_coding_gene 23421 24833 . - . ID=Phyra85424;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_184000009;logic_name=jgi_phyra1 scaffold_184 ensembl transcript 23421 24833 . - . ID=Phyra85424;Parent=Phyra85424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_184 . CDS 23421 24833 . - 0 ID=Phyra85424;Parent=Phyra85424;rank=1 scaffold_184 . exon 23421 24833 . - . ID=Phyra85424.1;Parent=Phyra85424;constitutive=1;rank=1 scaffold_184 . exon 28148 28213 . - . ID=Phyra43377.1;Parent=Phyra43377;constitutive=1;rank=1 scaffold_184 ensembl protein_coding_gene 30718 32148 . + . ID=Phyra85427;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_184000012;logic_name=jgi_phyra1 scaffold_184 ensembl transcript 30718 32148 . + . ID=Phyra85427;Parent=Phyra85427;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_184 . CDS 30718 32148 . + 0 ID=Phyra85427;Parent=Phyra85427;rank=1 scaffold_184 . exon 30718 32148 . + . ID=Phyra85427.1;Parent=Phyra85427;constitutive=1;rank=1 scaffold_184 ensembl protein_coding_gene 32807 34228 . + . ID=Phyra85428;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_184000013;logic_name=jgi_phyra1 scaffold_184 ensembl transcript 32807 34228 . + . ID=Phyra85428;Parent=Phyra85428;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_184 . CDS 32807 34228 . + 0 ID=Phyra85428;Parent=Phyra85428;rank=1 scaffold_184 . exon 32807 34228 . + . ID=Phyra85428.1;Parent=Phyra85428;constitutive=1;rank=1 scaffold_184 . repeat_region 35807 37954 . ? . description=dust scaffold_184 . repeat_region 39595 39646 . ? . description=trf scaffold_184 . repeat_region 43722 44006 . ? . description=trf scaffold_184 ensembl protein_coding_gene 38791 43698 . + . ID=Phyra85429;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_184000014;logic_name=jgi_phyra1 scaffold_184 ensembl transcript 38791 43698 . + . ID=Phyra85429;Parent=Phyra85429;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_184 . CDS 38791 40434 . + 0 ID=Phyra85429;Parent=Phyra85429;rank=1 scaffold_184 . exon 38791 40434 . + . ID=Phyra85429.1;Parent=Phyra85429;constitutive=1;rank=1 scaffold_184 . CDS 40885 43698 . + 0 ID=Phyra85429;Parent=Phyra85429;rank=2 scaffold_184 . exon 40885 43698 . + . ID=Phyra85429.2;Parent=Phyra85429;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_183 1 46416 scaffold_183 . repeat_region 1 569 . + . description=Gypsy-1-I_PI-int scaffold_183 . repeat_region 1038 33575 . ? . description=dust scaffold_183 . repeat_region 1038 33575 . ? . description=dust scaffold_183 ensembl protein_coding_gene 36898 38109 . - . ID=Phyra85415;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_183000001;logic_name=jgi_phyra1 scaffold_183 ensembl transcript 36898 38109 . - . ID=Phyra85415;Parent=Phyra85415;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_183 . CDS 36898 38109 . - 0 ID=Phyra85415;Parent=Phyra85415;rank=1 scaffold_183 . exon 36898 38109 . - . ID=Phyra85415.1;Parent=Phyra85415;constitutive=1;rank=1 scaffold_183 . repeat_region 38194 42973 . ? . description=dust scaffold_183 . repeat_region 43360 43474 . ? . description=trf scaffold_183 . repeat_region 44314 45614 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_181 1 46483 scaffold_181 . repeat_region 59 146 . ? . description=trf scaffold_181 . repeat_region 169 1413 . + . description=Polinton-1_PI scaffold_181 . repeat_region 348 367 . ? . description=trf scaffold_181 . repeat_region 384 438 . ? . description=trf scaffold_181 . repeat_region 1414 1463 . ? . description=dust scaffold_181 . repeat_region 1475 2982 . + . description=Polinton-1_PI scaffold_181 . repeat_region 2987 3036 . ? . description=dust scaffold_181 . repeat_region 3039 4096 . + . description=Polinton-1_PI scaffold_181 . repeat_region 4097 6788 . ? . description=dust scaffold_181 . repeat_region 6833 6840 . ? . description=dust scaffold_181 . repeat_region 6844 8865 . + . description=Polinton-1_PI scaffold_181 . repeat_region 7064 7072 . ? . description=dust scaffold_181 . repeat_region 8866 8939 . ? . description=dust scaffold_181 . repeat_region 8940 9199 . + . description=Polinton-1_PI scaffold_181 . repeat_region 9236 9243 . ? . description=dust scaffold_181 . repeat_region 13367 44949 . ? . description=dust scaffold_181 . repeat_region 13367 44949 . ? . description=dust scaffold_181 . repeat_region 45607 45649 . ? . description=trf scaffold_181 . repeat_region 45678 45718 . ? . description=trf scaffold_181 . repeat_region 45771 45808 . ? . description=trf scaffold_181 . biological_region 46388 46392 0.999 - . logic_name=eponine scaffold_181 ensembl protein_coding_gene 44951 45481 . + . ID=Phyra43307;biotype=protein_coding;external_name=gwEuk.181.4.1;logic_name=jgi_phyra1 scaffold_181 ensembl transcript 44951 45481 . + . ID=Phyra43307;Parent=Phyra43307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_181 . CDS 44951 45481 . + 0 ID=Phyra43307;Parent=Phyra43307;rank=1 scaffold_181 . exon 44951 45481 . + . ID=Phyra43307.1;Parent=Phyra43307;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_179 1 46900 scaffold_179 . repeat_region 1687 1700 . ? . description=dust scaffold_179 . repeat_region 1955 2221 . ? . description=dust scaffold_179 . repeat_region 3548 3611 . ? . description=trf scaffold_179 . repeat_region 4048 4058 . ? . description=dust scaffold_179 . repeat_region 4398 4405 . ? . description=dust scaffold_179 . repeat_region 6215 6264 . ? . description=dust scaffold_179 . biological_region 8260 8266 0.999 + . logic_name=eponine scaffold_179 . biological_region 8388 8391 0.999 - . logic_name=eponine scaffold_179 . biological_region 8608 8609 0.999 - . logic_name=eponine scaffold_179 . repeat_region 8711 9457 . ? . description=dust scaffold_179 ensembl protein_coding_gene 8035 8547 . - . ID=Phyra72332;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_179000001;logic_name=jgi_phyra1 scaffold_179 ensembl transcript 8035 8547 . - . ID=Phyra72332;Parent=Phyra72332;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_179 . CDS 8035 8547 . - 0 ID=Phyra72332;Parent=Phyra72332;rank=1 scaffold_179 . exon 8035 8547 . - . ID=Phyra72332.1;Parent=Phyra72332;constitutive=1;rank=1 scaffold_179 ensembl protein_coding_gene 5310 6188 . + . ID=Phyra85401;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_179000001;logic_name=jgi_phyra1 scaffold_179 ensembl transcript 5310 6188 . + . ID=Phyra85401;Parent=Phyra85401;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_179 . CDS 5310 6188 . + 0 ID=Phyra85401;Parent=Phyra85401;rank=1 scaffold_179 . exon 5310 6188 . + . ID=Phyra85401.1;Parent=Phyra85401;constitutive=1;rank=1 scaffold_179 . repeat_region 12153 45755 . ? . description=dust scaffold_179 . repeat_region 12153 45755 . ? . description=dust scaffold_179 ensembl protein_coding_gene 46495 46896 . + . ID=Phyra43032;biotype=protein_coding;external_name=gwEuk.179.9.1;logic_name=jgi_phyra1 scaffold_179 ensembl transcript 46495 46896 . + . ID=Phyra43032;Parent=Phyra43032;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_179 . CDS 46495 46896 . + 0 ID=Phyra43032;Parent=Phyra43032;rank=1 scaffold_179 . exon 46495 46896 . + . ID=Phyra43032.1;Parent=Phyra43032;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_182 1 46930 scaffold_182 . repeat_region 824 33992 . ? . description=dust scaffold_182 . repeat_region 824 33992 . ? . description=dust scaffold_182 . repeat_region 38503 38582 . ? . description=trf scaffold_182 . repeat_region 39202 39584 . ? . description=dust scaffold_182 . repeat_region 39734 39769 . ? . description=dust scaffold_182 . repeat_region 40892 41271 . ? . description=dust scaffold_182 . repeat_region 44974 45286 . ? . description=dust scaffold_182 . biological_region 45743 45750 0.999 - . logic_name=eponine scaffold_182 ensembl protein_coding_gene 43138 43491 . + . ID=Phyra72338;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_182000001;logic_name=jgi_phyra1 scaffold_182 ensembl transcript 43138 43491 . + . ID=Phyra72338;Parent=Phyra72338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_182 . CDS 43138 43491 . + 0 ID=Phyra72338;Parent=Phyra72338;rank=1 scaffold_182 . exon 43138 43491 . + . ID=Phyra72338.1;Parent=Phyra72338;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_180 1 47183 scaffold_180 . repeat_region 4149 4172 . ? . description=trf scaffold_180 ensembl protein_coding_gene 2 499 . + . ID=Phyra43253;biotype=protein_coding;external_name=gwEuk.180.1.1;logic_name=jgi_phyra1 scaffold_180 ensembl transcript 2 499 . + . ID=Phyra43253;Parent=Phyra43253;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_180 . CDS 2 499 . + 0 ID=Phyra43253;Parent=Phyra43253;rank=1 scaffold_180 . exon 2 499 . + . ID=Phyra43253.1;Parent=Phyra43253;constitutive=1;rank=1 scaffold_180 ensembl protein_coding_gene 811 1425 . - . ID=Phyra72333;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_180000001;logic_name=jgi_phyra1 scaffold_180 ensembl transcript 811 1425 . - . ID=Phyra72333;Parent=Phyra72333;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_180 . CDS 811 1291 . - 0 ID=Phyra72333;Parent=Phyra72333;rank=2 scaffold_180 . exon 811 1291 . - . ID=Phyra72333.2;Parent=Phyra72333;constitutive=1;ensembl_phase=2;rank=2 scaffold_180 . CDS 1355 1425 . - 0 ID=Phyra72333;Parent=Phyra72333;rank=1 scaffold_180 . exon 1355 1425 . - . ID=Phyra72333.1;Parent=Phyra72333;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_180 ensembl protein_coding_gene 4235 5296 . + . ID=Phyra72334;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_180000002;logic_name=jgi_phyra1 scaffold_180 ensembl transcript 4235 5296 . + . ID=Phyra72334;Parent=Phyra72334;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_180 . CDS 4235 5296 . + 0 ID=Phyra72334;Parent=Phyra72334;rank=1 scaffold_180 . exon 4235 5296 . + . ID=Phyra72334.1;Parent=Phyra72334;constitutive=1;rank=1 scaffold_180 ensembl protein_coding_gene 6071 7423 . + . ID=Phyra72335;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_180000003;logic_name=jgi_phyra1 scaffold_180 ensembl transcript 6071 7423 . + . ID=Phyra72335;Parent=Phyra72335;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_180 . CDS 6071 7423 . + 0 ID=Phyra72335;Parent=Phyra72335;rank=1 scaffold_180 . exon 6071 7423 . + . ID=Phyra72335.1;Parent=Phyra72335;constitutive=1;rank=1 scaffold_180 ensembl protein_coding_gene 1594 3476 . - . ID=Phyra85404;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_180000002;logic_name=jgi_phyra1 scaffold_180 ensembl transcript 1594 3476 . - . ID=Phyra85404;Parent=Phyra85404;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_180 . CDS 1594 1689 . - 0 ID=Phyra85404;Parent=Phyra85404;rank=6 scaffold_180 . exon 1594 1689 . - . ID=Phyra85404.6;Parent=Phyra85404;constitutive=1;rank=6 scaffold_180 . CDS 1758 1880 . - 0 ID=Phyra85404;Parent=Phyra85404;rank=5 scaffold_180 . exon 1758 1880 . - . ID=Phyra85404.5;Parent=Phyra85404;constitutive=1;rank=5 scaffold_180 . CDS 1947 2189 . - 0 ID=Phyra85404;Parent=Phyra85404;rank=4 scaffold_180 . exon 1947 2189 . - . ID=Phyra85404.4;Parent=Phyra85404;constitutive=1;rank=4 scaffold_180 . CDS 2541 2715 . - 0 ID=Phyra85404;Parent=Phyra85404;rank=3 scaffold_180 . exon 2541 2715 . - . ID=Phyra85404.3;Parent=Phyra85404;constitutive=1;ensembl_phase=2;rank=3 scaffold_180 . CDS 2775 3334 . - 0 ID=Phyra85404;Parent=Phyra85404;rank=2 scaffold_180 . exon 2775 3334 . - . ID=Phyra85404.2;Parent=Phyra85404;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_180 . CDS 3459 3476 . - 0 ID=Phyra85404;Parent=Phyra85404;rank=1 scaffold_180 . exon 3459 3476 . - . ID=Phyra85404.1;Parent=Phyra85404;constitutive=1;rank=1 scaffold_180 ensembl protein_coding_gene 8431 30114 . + . ID=Phyra85407;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_180000005;logic_name=jgi_phyra1 scaffold_180 ensembl transcript 8431 30114 . + . ID=Phyra85407;Parent=Phyra85407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_180 . CDS 8431 9741 . + 0 ID=Phyra85407;Parent=Phyra85407;rank=1 scaffold_180 . exon 8431 9741 . + . ID=Phyra85407.1;Parent=Phyra85407;constitutive=1;rank=1 scaffold_180 . CDS 29770 30114 . + 0 ID=Phyra85407;Parent=Phyra85407;rank=2 scaffold_180 . biological_region 9610 9610 0.999 - . logic_name=eponine scaffold_180 . repeat_region 9804 29757 . ? . description=dust scaffold_180 ensembl protein_coding_gene 8431 30114 . + . ID=Phyra85407;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_180000005;logic_name=jgi_phyra1 scaffold_180 ensembl transcript 8431 30114 . + . ID=Phyra85407;Parent=Phyra85407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_180 . CDS 8431 9741 . + 0 ID=Phyra85407;Parent=Phyra85407;rank=1 scaffold_180 . CDS 29770 30114 . + 0 ID=Phyra85407;Parent=Phyra85407;rank=2 scaffold_180 . repeat_region 9804 29757 . ? . description=dust scaffold_180 . repeat_region 30650 33057 . ? . description=dust scaffold_180 . repeat_region 34049 34098 . ? . description=dust scaffold_180 . biological_region 36381 36390 0.999 + . logic_name=eponine scaffold_180 . biological_region 36422 36426 0.999 - . logic_name=eponine scaffold_180 . biological_region 36461 36464 0.999 - . logic_name=eponine scaffold_180 . biological_region 36639 36641 0.999 - . logic_name=eponine scaffold_180 . biological_region 36656 36659 0.999 - . logic_name=eponine scaffold_180 . exon 29770 30114 . + . ID=Phyra85407.2;Parent=Phyra85407;constitutive=1;rank=2 scaffold_180 ensembl protein_coding_gene 33146 34288 . + . ID=Phyra85408;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_180000006;logic_name=jgi_phyra1 scaffold_180 ensembl transcript 33146 34288 . + . ID=Phyra85408;Parent=Phyra85408;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_180 . CDS 33146 34028 . + 0 ID=Phyra85408;Parent=Phyra85408;rank=1 scaffold_180 . exon 33146 34028 . + . ID=Phyra85408.1;Parent=Phyra85408;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_180 . CDS 34110 34288 . + 0 ID=Phyra85408;Parent=Phyra85408;rank=2 scaffold_180 . exon 34110 34288 . + . ID=Phyra85408.2;Parent=Phyra85408;constitutive=1;ensembl_phase=1;rank=2 scaffold_180 ensembl protein_coding_gene 34968 39277 . + . ID=Phyra85409;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_180000007;logic_name=jgi_phyra1 scaffold_180 ensembl transcript 34968 39277 . + . ID=Phyra85409;Parent=Phyra85409;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_180 . CDS 34968 35324 . + 0 ID=Phyra85409;Parent=Phyra85409;rank=1 scaffold_180 . exon 34968 35324 . + . ID=Phyra85409.1;Parent=Phyra85409;constitutive=1;rank=1 scaffold_180 . CDS 35395 36110 . + 0 ID=Phyra85409;Parent=Phyra85409;rank=2 scaffold_180 . exon 35395 36110 . + . ID=Phyra85409.2;Parent=Phyra85409;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_180 . CDS 36185 36207 . + 0 ID=Phyra85409;Parent=Phyra85409;rank=3 scaffold_180 . exon 36185 36207 . + . ID=Phyra85409.3;Parent=Phyra85409;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_180 . CDS 36288 39277 . + 0 ID=Phyra85409;Parent=Phyra85409;rank=4 scaffold_180 . exon 36288 39277 . + . ID=Phyra85409.4;Parent=Phyra85409;constitutive=1;ensembl_phase=1;rank=4 scaffold_180 . repeat_region 43531 43581 . + . description=(CTA)n scaffold_180 . repeat_region 43552 43581 . ? . description=trf scaffold_180 ensembl protein_coding_gene 39414 40265 . - . ID=Phyra43284;biotype=protein_coding;external_name=gwEuk.180.32.1;logic_name=jgi_phyra1 scaffold_180 ensembl transcript 39414 40265 . - . ID=Phyra43284;Parent=Phyra43284;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_180 . CDS 39414 40265 . - 0 ID=Phyra43284;Parent=Phyra43284;rank=1 scaffold_180 . exon 39414 40265 . - . ID=Phyra43284.1;Parent=Phyra43284;constitutive=1;rank=1 scaffold_180 ensembl protein_coding_gene 40923 43422 . - . ID=Phyra85411;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_180000009;logic_name=jgi_phyra1 scaffold_180 ensembl transcript 40923 43422 . - . ID=Phyra85411;Parent=Phyra85411;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_180 . CDS 40923 43208 . - 0 ID=Phyra85411;Parent=Phyra85411;rank=2 scaffold_180 . exon 40923 43208 . - . ID=Phyra85411.2;Parent=Phyra85411;constitutive=1;rank=2 scaffold_180 . CDS 43357 43422 . - 0 ID=Phyra85411;Parent=Phyra85411;rank=1 scaffold_180 . exon 43357 43422 . - . ID=Phyra85411.1;Parent=Phyra85411;constitutive=1;rank=1 scaffold_180 ensembl protein_coding_gene 45844 47156 . + . ID=Phyra85412;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_180000010;logic_name=jgi_phyra1 scaffold_180 ensembl transcript 45844 47156 . + . ID=Phyra85412;Parent=Phyra85412;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_180 . CDS 45844 45879 . + 0 ID=Phyra85412;Parent=Phyra85412;rank=1 scaffold_180 . exon 45844 45879 . + . ID=Phyra85412.1;Parent=Phyra85412;constitutive=1;rank=1 scaffold_180 . CDS 45914 47156 . + 0 ID=Phyra85412;Parent=Phyra85412;rank=2 scaffold_180 . exon 45914 47156 . + . ID=Phyra85412.2;Parent=Phyra85412;constitutive=1;ensembl_end_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_178 1 47597 scaffold_178 . repeat_region 4993 5052 . ? . description=dust scaffold_178 . repeat_region 6888 6937 . ? . description=dust scaffold_178 ensembl protein_coding_gene 1002 2333 . - . ID=Phyra85399;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_178000001;logic_name=jgi_phyra1 scaffold_178 ensembl transcript 1002 2333 . - . ID=Phyra85399;Parent=Phyra85399;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_178 . CDS 1002 2333 . - 0 ID=Phyra85399;Parent=Phyra85399;rank=1 scaffold_178 . exon 1002 2333 . - . ID=Phyra85399.1;Parent=Phyra85399;constitutive=1;rank=1 scaffold_178 ensembl protein_coding_gene 3186 5773 . - . ID=Phyra85400;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_178000002;logic_name=jgi_phyra1 scaffold_178 ensembl transcript 3186 5773 . - . ID=Phyra85400;Parent=Phyra85400;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_178 . CDS 3186 3642 . - 0 ID=Phyra85400;Parent=Phyra85400;rank=5 scaffold_178 . exon 3186 3642 . - . ID=Phyra85400.5;Parent=Phyra85400;constitutive=1;ensembl_phase=2;rank=5 scaffold_178 . CDS 4064 4251 . - 0 ID=Phyra85400;Parent=Phyra85400;rank=4 scaffold_178 . exon 4064 4251 . - . ID=Phyra85400.4;Parent=Phyra85400;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_178 . CDS 4313 4797 . - 0 ID=Phyra85400;Parent=Phyra85400;rank=3 scaffold_178 . exon 4313 4797 . - . ID=Phyra85400.3;Parent=Phyra85400;constitutive=1;ensembl_phase=1;rank=3 scaffold_178 . CDS 4862 5524 . - 0 ID=Phyra85400;Parent=Phyra85400;rank=2 scaffold_178 . exon 4862 5524 . - . ID=Phyra85400.2;Parent=Phyra85400;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_178 . CDS 5605 5773 . - 0 ID=Phyra85400;Parent=Phyra85400;rank=1 scaffold_178 . exon 5605 5773 . - . ID=Phyra85400.1;Parent=Phyra85400;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_178 . biological_region 13898 13902 0.999 + . logic_name=eponine scaffold_178 . repeat_region 15960 37218 . ? . description=dust scaffold_178 . biological_region 37284 37290 0.999 + . logic_name=eponine scaffold_178 . repeat_region 37352 37423 . ? . description=trf scaffold_178 . biological_region 37780 37785 0.999 - . logic_name=eponine scaffold_178 . repeat_region 38869 39443 . ? . description=dust scaffold_178 . repeat_region 41304 46553 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_176 1 48991 scaffold_176 . repeat_region 910 3950 . ? . description=dust scaffold_176 . repeat_region 4778 5277 . ? . description=dust scaffold_176 . biological_region 6477 6480 0.999 - . logic_name=eponine scaffold_176 . repeat_region 9242 9521 . ? . description=trf scaffold_176 . biological_region 9244 9247 0.999 - . logic_name=eponine scaffold_176 ensembl protein_coding_gene 9013 9998 . - . ID=Phyra85395;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_176000001;logic_name=jgi_phyra1 scaffold_176 ensembl transcript 9013 9998 . - . ID=Phyra85395;Parent=Phyra85395;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_176 . CDS 9013 9094 . - 0 ID=Phyra85395;Parent=Phyra85395;rank=4 scaffold_176 . exon 9013 9094 . - . ID=Phyra85395.4;Parent=Phyra85395;constitutive=1;ensembl_phase=2;rank=4 scaffold_176 . CDS 9202 9563 . - 0 ID=Phyra85395;Parent=Phyra85395;rank=3 scaffold_176 . exon 9202 9563 . - . ID=Phyra85395.3;Parent=Phyra85395;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_176 . CDS 9790 9866 . - 0 ID=Phyra85395;Parent=Phyra85395;rank=2 scaffold_176 . exon 9790 9866 . - . ID=Phyra85395.2;Parent=Phyra85395;constitutive=1;ensembl_phase=1;rank=2 scaffold_176 . CDS 9923 9998 . - 0 ID=Phyra85395;Parent=Phyra85395;rank=1 scaffold_176 . exon 9923 9998 . - . ID=Phyra85395.1;Parent=Phyra85395;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_176 . repeat_region 15844 35656 . ? . description=dust scaffold_176 ensembl protein_coding_gene 36559 37605 . - . ID=Phyra85396;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_176000002;logic_name=jgi_phyra1 scaffold_176 ensembl transcript 36559 37605 . - . ID=Phyra85396;Parent=Phyra85396;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_176 . CDS 36559 37605 . - 0 ID=Phyra85396;Parent=Phyra85396;rank=1 scaffold_176 . exon 36559 37605 . - . ID=Phyra85396.1;Parent=Phyra85396;constitutive=1;rank=1 scaffold_176 . repeat_region 39425 40623 . ? . description=dust scaffold_176 . repeat_region 40831 40861 . ? . description=dust scaffold_176 . repeat_region 41720 41802 . ? . description=trf scaffold_176 . repeat_region 41882 43719 . ? . description=dust scaffold_176 . biological_region 43868 43869 0.999 - . logic_name=eponine scaffold_176 . biological_region 44036 44039 0.999 + . logic_name=eponine scaffold_176 . biological_region 44531 44536 0.999 - . logic_name=eponine scaffold_176 . repeat_region 47118 47313 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_174 1 49290 scaffold_174 . repeat_region 1506 3304 . ? . description=dust scaffold_174 . repeat_region 5141 5190 . ? . description=dust scaffold_174 . repeat_region 6155 6204 . ? . description=dust scaffold_174 . repeat_region 8560 12087 . ? . description=dust scaffold_174 ensembl protein_coding_gene 6215 8397 . - . ID=Phyra85383;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_174000001;logic_name=jgi_phyra1 scaffold_174 ensembl transcript 6215 8397 . - . ID=Phyra85383;Parent=Phyra85383;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_174 . CDS 6215 6237 . - 0 ID=Phyra85383;Parent=Phyra85383;rank=4 scaffold_174 . exon 6215 6237 . - . ID=Phyra85383.4;Parent=Phyra85383;constitutive=1;ensembl_phase=1;rank=4 scaffold_174 . CDS 6513 7684 . - 0 ID=Phyra85383;Parent=Phyra85383;rank=3 scaffold_174 . exon 6513 7684 . - . ID=Phyra85383.3;Parent=Phyra85383;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_174 . CDS 7708 7955 . - 0 ID=Phyra85383;Parent=Phyra85383;rank=2 scaffold_174 . exon 7708 7955 . - . ID=Phyra85383.2;Parent=Phyra85383;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_174 . CDS 7999 8397 . - 0 ID=Phyra85383;Parent=Phyra85383;rank=1 scaffold_174 . exon 7999 8397 . - . ID=Phyra85383.1;Parent=Phyra85383;constitutive=1;rank=1 scaffold_174 . repeat_region 14647 14733 . ? . description=trf scaffold_174 ensembl protein_coding_gene 12215 14472 . + . ID=Phyra85384;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_174000002;logic_name=jgi_phyra1 scaffold_174 ensembl transcript 12215 14472 . + . ID=Phyra85384;Parent=Phyra85384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_174 . CDS 12215 12764 . + 0 ID=Phyra85384;Parent=Phyra85384;rank=1 scaffold_174 . exon 12215 12764 . + . ID=Phyra85384.1;Parent=Phyra85384;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_174 . CDS 13394 13413 . + 0 ID=Phyra85384;Parent=Phyra85384;rank=2 scaffold_174 . exon 13394 13413 . + . ID=Phyra85384.2;Parent=Phyra85384;constitutive=1;ensembl_phase=1;rank=2 scaffold_174 . CDS 13846 14472 . + 0 ID=Phyra85384;Parent=Phyra85384;rank=3 scaffold_174 . exon 13846 14472 . + . ID=Phyra85384.3;Parent=Phyra85384;constitutive=1;rank=3 scaffold_174 . repeat_region 17052 36895 . ? . description=dust scaffold_174 . repeat_region 37980 38026 . ? . description=trf scaffold_174 . repeat_region 37981 38026 . ? . description=trf scaffold_174 . repeat_region 40042 40049 . ? . description=dust scaffold_174 . biological_region 40597 40599 0.999 + . logic_name=eponine scaffold_174 . biological_region 40836 40839 0.999 + . logic_name=eponine scaffold_174 . biological_region 40880 40886 0.999 - . logic_name=eponine scaffold_174 . biological_region 40939 40943 0.999 + . logic_name=eponine scaffold_174 . biological_region 41154 41154 0.999 - . logic_name=eponine scaffold_174 . biological_region 44716 44721 0.999 + . logic_name=eponine scaffold_174 . biological_region 44774 44776 0.999 - . logic_name=eponine scaffold_174 . biological_region 44829 44831 0.999 + . logic_name=eponine scaffold_174 . repeat_region 45269 45276 . ? . description=dust scaffold_174 . biological_region 47103 47105 0.999 + . logic_name=eponine scaffold_174 . biological_region 47134 47138 0.999 - . logic_name=eponine scaffold_174 . biological_region 47827 47827 0.999 + . logic_name=eponine scaffold_174 . biological_region 48769 48769 0.999 - . logic_name=eponine scaffold_174 . biological_region 48983 48985 0.999 + . logic_name=eponine scaffold_174 ensembl protein_coding_gene 40514 44185 . + . ID=Phyra85385;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_174000003;logic_name=jgi_phyra1 scaffold_174 ensembl transcript 40514 44185 . + . ID=Phyra85385;Parent=Phyra85385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_174 . CDS 40514 44185 . + 0 ID=Phyra85385;Parent=Phyra85385;rank=1 scaffold_174 . exon 40514 44185 . + . ID=Phyra85385.1;Parent=Phyra85385;constitutive=1;rank=1 scaffold_174 ensembl protein_coding_gene 45306 46717 . + . ID=Phyra85386;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_174000004;logic_name=jgi_phyra1 scaffold_174 ensembl transcript 45306 46717 . + . ID=Phyra85386;Parent=Phyra85386;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_174 . CDS 45306 45466 . + 0 ID=Phyra85386;Parent=Phyra85386;rank=1 scaffold_174 . exon 45306 45466 . + . ID=Phyra85386.1;Parent=Phyra85386;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_174 . CDS 45528 45780 . + 0 ID=Phyra85386;Parent=Phyra85386;rank=2 scaffold_174 . exon 45528 45780 . + . ID=Phyra85386.2;Parent=Phyra85386;constitutive=1;ensembl_phase=2;rank=2 scaffold_174 . CDS 45844 45881 . + 0 ID=Phyra85386;Parent=Phyra85386;rank=3 scaffold_174 . exon 45844 45881 . + . ID=Phyra85386.3;Parent=Phyra85386;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_174 . CDS 45950 46068 . + 0 ID=Phyra85386;Parent=Phyra85386;rank=4 scaffold_174 . exon 45950 46068 . + . ID=Phyra85386.4;Parent=Phyra85386;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_174 . CDS 46127 46276 . + 0 ID=Phyra85386;Parent=Phyra85386;rank=5 scaffold_174 . exon 46127 46276 . + . ID=Phyra85386.5;Parent=Phyra85386;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_174 . CDS 46346 46568 . + 0 ID=Phyra85386;Parent=Phyra85386;rank=6 scaffold_174 . exon 46346 46568 . + . ID=Phyra85386.6;Parent=Phyra85386;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_174 . CDS 46639 46717 . + 0 ID=Phyra85386;Parent=Phyra85386;rank=7 scaffold_174 . exon 46639 46717 . + . ID=Phyra85386.7;Parent=Phyra85386;constitutive=1;ensembl_phase=2;rank=7 scaffold_174 ensembl protein_coding_gene 47035 48141 . + . ID=Phyra85387;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_174000005;logic_name=jgi_phyra1 scaffold_174 ensembl transcript 47035 48141 . + . ID=Phyra85387;Parent=Phyra85387;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_174 . CDS 47035 48141 . + 0 ID=Phyra85387;Parent=Phyra85387;rank=1 scaffold_174 . exon 47035 48141 . + . ID=Phyra85387.1;Parent=Phyra85387;constitutive=1;rank=1 scaffold_174 ensembl protein_coding_gene 48349 49289 . - . ID=Phyra85388;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_174000006;logic_name=jgi_phyra1 scaffold_174 ensembl transcript 48349 49289 . - . ID=Phyra85388;Parent=Phyra85388;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_174 . CDS 48349 49128 . - 0 ID=Phyra85388;Parent=Phyra85388;rank=2 scaffold_174 . exon 48349 49128 . - . ID=Phyra85388.2;Parent=Phyra85388;constitutive=1;rank=2 scaffold_174 . CDS 49200 49289 . - 0 ID=Phyra85388;Parent=Phyra85388;rank=1 scaffold_174 . exon 49200 49289 . - . ID=Phyra85388.1;Parent=Phyra85388;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_175 1 49326 scaffold_175 . repeat_region 1406 1413 . ? . description=dust scaffold_175 . repeat_region 3005 3088 . ? . description=trf scaffold_175 . biological_region 3159 3159 0.999 + . logic_name=eponine scaffold_175 . biological_region 3192 3193 0.999 + . logic_name=eponine scaffold_175 . biological_region 3208 3211 0.999 + . logic_name=eponine scaffold_175 . biological_region 3379 3384 0.999 - . logic_name=eponine scaffold_175 . biological_region 7615 7617 0.999 + . logic_name=eponine scaffold_175 . biological_region 8162 8164 0.999 - . logic_name=eponine scaffold_175 . biological_region 8415 8418 0.999 - . logic_name=eponine scaffold_175 ensembl protein_coding_gene 3785 4988 . - . ID=Phyra42981;biotype=protein_coding;external_name=gwEuk.175.5.1;logic_name=jgi_phyra1 scaffold_175 ensembl transcript 3785 4988 . - . ID=Phyra42981;Parent=Phyra42981;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_175 . CDS 3785 4062 . - 0 ID=Phyra42981;Parent=Phyra42981;rank=5 scaffold_175 . exon 3785 4062 . - . ID=Phyra42981.5;Parent=Phyra42981;constitutive=1;ensembl_phase=1;rank=5 scaffold_175 . CDS 4127 4248 . - 0 ID=Phyra42981;Parent=Phyra42981;rank=4 scaffold_175 . exon 4127 4248 . - . ID=Phyra42981.4;Parent=Phyra42981;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_175 . CDS 4306 4549 . - 0 ID=Phyra42981;Parent=Phyra42981;rank=3 scaffold_175 . exon 4306 4549 . - . ID=Phyra42981.3;Parent=Phyra42981;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_175 . CDS 4690 4813 . - 0 ID=Phyra42981;Parent=Phyra42981;rank=2 scaffold_175 . exon 4690 4813 . - . ID=Phyra42981.2;Parent=Phyra42981;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_175 . CDS 4890 4988 . - 0 ID=Phyra42981;Parent=Phyra42981;rank=1 scaffold_175 . exon 4890 4988 . - . ID=Phyra42981.1;Parent=Phyra42981;constitutive=1;rank=1 scaffold_175 ensembl protein_coding_gene 2209 3368 . - . ID=Phyra85389;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_175000001;logic_name=jgi_phyra1 scaffold_175 ensembl transcript 2209 3368 . - . ID=Phyra85389;Parent=Phyra85389;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_175 . CDS 2209 2264 . - 0 ID=Phyra85389;Parent=Phyra85389;rank=2 scaffold_175 . exon 2209 2264 . - . ID=Phyra85389.2;Parent=Phyra85389;constitutive=1;ensembl_phase=1;rank=2 scaffold_175 . CDS 2285 3368 . - 0 ID=Phyra85389;Parent=Phyra85389;rank=1 scaffold_175 . exon 2285 3368 . - . ID=Phyra85389.1;Parent=Phyra85389;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_175 ensembl protein_coding_gene 5455 7217 . - . ID=Phyra85391;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_175000003;logic_name=jgi_phyra1 scaffold_175 ensembl transcript 5455 7217 . - . ID=Phyra85391;Parent=Phyra85391;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_175 . CDS 5455 5615 . - 0 ID=Phyra85391;Parent=Phyra85391;rank=9 scaffold_175 . exon 5455 5615 . - . ID=Phyra85391.9;Parent=Phyra85391;constitutive=1;ensembl_phase=1;rank=9 scaffold_175 . CDS 5695 5947 . - 0 ID=Phyra85391;Parent=Phyra85391;rank=8 scaffold_175 . exon 5695 5947 . - . ID=Phyra85391.8;Parent=Phyra85391;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_175 . CDS 6027 6134 . - 0 ID=Phyra85391;Parent=Phyra85391;rank=7 scaffold_175 . exon 6027 6134 . - . ID=Phyra85391.7;Parent=Phyra85391;constitutive=1;rank=7 scaffold_175 . CDS 6206 6360 . - 0 ID=Phyra85391;Parent=Phyra85391;rank=6 scaffold_175 . exon 6206 6360 . - . ID=Phyra85391.6;Parent=Phyra85391;constitutive=1;ensembl_phase=1;rank=6 scaffold_175 . CDS 6424 6538 . - 0 ID=Phyra85391;Parent=Phyra85391;rank=5 scaffold_175 . exon 6424 6538 . - . ID=Phyra85391.5;Parent=Phyra85391;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_175 . CDS 6618 6699 . - 0 ID=Phyra85391;Parent=Phyra85391;rank=4 scaffold_175 . exon 6618 6699 . - . ID=Phyra85391.4;Parent=Phyra85391;constitutive=1;ensembl_phase=2;rank=4 scaffold_175 . CDS 6770 6888 . - 0 ID=Phyra85391;Parent=Phyra85391;rank=3 scaffold_175 . exon 6770 6888 . - . ID=Phyra85391.3;Parent=Phyra85391;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_175 . CDS 6960 7012 . - 0 ID=Phyra85391;Parent=Phyra85391;rank=2 scaffold_175 . exon 6960 7012 . - . ID=Phyra85391.2;Parent=Phyra85391;constitutive=1;ensembl_phase=1;rank=2 scaffold_175 . CDS 7082 7217 . - 0 ID=Phyra85391;Parent=Phyra85391;rank=1 scaffold_175 . exon 7082 7217 . - . ID=Phyra85391.1;Parent=Phyra85391;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_175 ensembl protein_coding_gene 7353 10157 . + . ID=Phyra85392;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_175000004;logic_name=jgi_phyra1 scaffold_175 ensembl transcript 7353 10157 . + . ID=Phyra85392;Parent=Phyra85392;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_175 . CDS 7353 8042 . + 0 ID=Phyra85392;Parent=Phyra85392;rank=1 scaffold_175 . exon 7353 8042 . + . ID=Phyra85392.1;Parent=Phyra85392;constitutive=1;rank=1 scaffold_175 . CDS 8112 10157 . + 0 ID=Phyra85392;Parent=Phyra85392;rank=2 scaffold_175 . exon 8112 10157 . + . ID=Phyra85392.2;Parent=Phyra85392;constitutive=1;rank=2 scaffold_175 ensembl protein_coding_gene 10424 14013 . - . ID=Phyra85393;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_175000005;logic_name=jgi_phyra1 scaffold_175 ensembl transcript 10424 14013 . - . ID=Phyra85393;Parent=Phyra85393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_175 . CDS 10424 11793 . - 0 ID=Phyra85393;Parent=Phyra85393;rank=3 scaffold_175 . exon 10424 11793 . - . ID=Phyra85393.3;Parent=Phyra85393;constitutive=1;ensembl_phase=1;rank=3 scaffold_175 . CDS 11986 13943 . - 0 ID=Phyra85393;Parent=Phyra85393;rank=2 scaffold_175 . exon 11986 13943 . - . ID=Phyra85393.2;Parent=Phyra85393;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_175 . CDS 13976 14013 . - 0 ID=Phyra85393;Parent=Phyra85393;rank=1 scaffold_175 . exon 13976 14013 . - . ID=Phyra85393.1;Parent=Phyra85393;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_175 . repeat_region 14518 47721 . ? . description=dust scaffold_175 . repeat_region 14518 47721 . ? . description=dust scaffold_175 . biological_region 48063 48066 0.999 - . logic_name=eponine scaffold_175 . biological_region 48356 48361 0.999 - . logic_name=eponine scaffold_175 . biological_region 48406 48408 0.999 - . logic_name=eponine scaffold_175 . biological_region 48413 48418 0.999 + . logic_name=eponine scaffold_175 . biological_region 48429 48436 0.999 - . logic_name=eponine scaffold_175 . biological_region 48444 48449 0.999 - . logic_name=eponine scaffold_175 . biological_region 48458 48462 0.999 + . logic_name=eponine scaffold_175 . biological_region 48484 48490 0.999 + . logic_name=eponine scaffold_175 . biological_region 48561 48568 0.999 - . logic_name=eponine scaffold_175 . biological_region 48658 48665 0.999 - . logic_name=eponine scaffold_175 . biological_region 48683 48684 0.999 - . logic_name=eponine scaffold_175 ensembl protein_coding_gene 47853 49262 . - . ID=Phyra85394;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_175000006;logic_name=jgi_phyra1 scaffold_175 ensembl transcript 47853 49262 . - . ID=Phyra85394;Parent=Phyra85394;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_175 . CDS 47853 47869 . - 0 ID=Phyra85394;Parent=Phyra85394;rank=2 scaffold_175 . exon 47853 47869 . - . ID=Phyra85394.2;Parent=Phyra85394;constitutive=1;ensembl_phase=1;rank=2 scaffold_175 . CDS 47892 49260 . - 0 ID=Phyra85394;Parent=Phyra85394;rank=1 scaffold_175 . exon 47892 49262 . - . ID=Phyra85394.1;Parent=Phyra85394;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_173 1 49505 scaffold_173 . repeat_region 1 130 . ? . description=trf scaffold_173 . repeat_region 1235 3520 . ? . description=dust scaffold_173 . repeat_region 5484 5496 . ? . description=dust scaffold_173 . repeat_region 5864 5873 . ? . description=dust scaffold_173 ensembl protein_coding_gene 7192 8667 . + . ID=Phyra85377;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_173000001;logic_name=jgi_phyra1 scaffold_173 ensembl transcript 7192 8667 . + . ID=Phyra85377;Parent=Phyra85377;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_173 . CDS 7192 8667 . + 0 ID=Phyra85377;Parent=Phyra85377;rank=1 scaffold_173 . exon 7192 8667 . + . ID=Phyra85377.1;Parent=Phyra85377;constitutive=1;rank=1 scaffold_173 ensembl protein_coding_gene 11583 13586 . - . ID=Phyra85378;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_173000002;logic_name=jgi_phyra1 scaffold_173 ensembl transcript 11583 13586 . - . ID=Phyra85378;Parent=Phyra85378;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_173 . CDS 11583 13154 . - 0 ID=Phyra85378;Parent=Phyra85378;rank=2 scaffold_173 . exon 11583 13154 . - . ID=Phyra85378.2;Parent=Phyra85378;constitutive=1;rank=2 scaffold_173 . CDS 13545 13586 . - 0 ID=Phyra85378;Parent=Phyra85378;rank=1 scaffold_173 . exon 13545 13586 . - . ID=Phyra85378.1;Parent=Phyra85378;constitutive=1;rank=1 scaffold_173 ensembl protein_coding_gene 16364 17296 . + . ID=Phyra85379;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_173000003;logic_name=jgi_phyra1 scaffold_173 ensembl transcript 16364 17296 . + . ID=Phyra85379;Parent=Phyra85379;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_173 . CDS 16364 16691 . + 0 ID=Phyra85379;Parent=Phyra85379;rank=1 scaffold_173 . exon 16364 16691 . + . ID=Phyra85379.1;Parent=Phyra85379;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_173 . CDS 16731 17296 . + 0 ID=Phyra85379;Parent=Phyra85379;rank=2 scaffold_173 . exon 16731 17296 . + . ID=Phyra85379.2;Parent=Phyra85379;constitutive=1;ensembl_phase=1;rank=2 scaffold_173 ensembl protein_coding_gene 17948 18925 . - . ID=Phyra85380;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_173000004;logic_name=jgi_phyra1 scaffold_173 ensembl transcript 17948 18925 . - . ID=Phyra85380;Parent=Phyra85380;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_173 . CDS 17948 18925 . - 0 ID=Phyra85380;Parent=Phyra85380;rank=1 scaffold_173 . exon 17948 18925 . - . ID=Phyra85380.1;Parent=Phyra85380;constitutive=1;rank=1 scaffold_173 . repeat_region 24816 24823 . ? . description=dust scaffold_173 . repeat_region 26078 26474 . ? . description=dust scaffold_173 . repeat_region 26583 27987 . + . description=GypsyPi-1c_I-int scaffold_173 . repeat_region 26939 27201 . ? . description=trf scaffold_173 . biological_region 27047 27050 0.999 + . logic_name=eponine scaffold_173 . repeat_region 27988 28626 . ? . description=dust scaffold_173 . repeat_region 29356 29371 . ? . description=dust scaffold_173 ensembl protein_coding_gene 25498 26007 . + . ID=Phyra85381;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_173000005;logic_name=jgi_phyra1 scaffold_173 ensembl transcript 25498 26007 . + . ID=Phyra85381;Parent=Phyra85381;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_173 . CDS 25498 26007 . + 0 ID=Phyra85381;Parent=Phyra85381;rank=1 scaffold_173 . exon 25498 26007 . + . ID=Phyra85381.1;Parent=Phyra85381;constitutive=1;rank=1 scaffold_173 . repeat_region 38901 43933 . ? . description=dust scaffold_173 . repeat_region 45442 45450 . ? . description=dust scaffold_173 . repeat_region 45921 45946 . ? . description=trf scaffold_173 ensembl protein_coding_gene 47710 48603 . - . ID=Phyra85382;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_173000006;logic_name=jgi_phyra1 scaffold_173 ensembl transcript 47710 48603 . - . ID=Phyra85382;Parent=Phyra85382;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_173 . CDS 47710 48603 . - 0 ID=Phyra85382;Parent=Phyra85382;rank=1 scaffold_173 . exon 47710 48603 . - . ID=Phyra85382.1;Parent=Phyra85382;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_171 1 49720 scaffold_171 . biological_region 3726 3729 0.999 + . logic_name=eponine scaffold_171 . biological_region 4045 4045 0.999 + . logic_name=eponine scaffold_171 . biological_region 4188 4192 0.999 - . logic_name=eponine scaffold_171 . repeat_region 5819 5865 . ? . description=dust scaffold_171 . repeat_region 6590 6692 . ? . description=dust scaffold_171 . biological_region 7607 7609 0.999 - . logic_name=eponine scaffold_171 . biological_region 7663 7664 0.999 + . logic_name=eponine scaffold_171 . biological_region 8118 8118 0.999 + . logic_name=eponine scaffold_171 ensembl protein_coding_gene 47 5836 . - . ID=Phyra85369;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_171000001;logic_name=jgi_phyra1 scaffold_171 ensembl transcript 47 5836 . - . ID=Phyra85369;Parent=Phyra85369;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_171 . CDS 47 2152 . - 0 ID=Phyra85369;Parent=Phyra85369;rank=6 scaffold_171 . exon 47 2152 . - . ID=Phyra85369.6;Parent=Phyra85369;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_171 . CDS 2699 3406 . - 0 ID=Phyra85369;Parent=Phyra85369;rank=5 scaffold_171 . exon 2699 3406 . - . ID=Phyra85369.5;Parent=Phyra85369;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_171 . CDS 3606 3622 . - 0 ID=Phyra85369;Parent=Phyra85369;rank=4 scaffold_171 . exon 3606 3622 . - . ID=Phyra85369.4;Parent=Phyra85369;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_171 . CDS 3807 4072 . - 0 ID=Phyra85369;Parent=Phyra85369;rank=3 scaffold_171 . exon 3807 4072 . - . ID=Phyra85369.3;Parent=Phyra85369;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_171 . CDS 4172 4487 . - 0 ID=Phyra85369;Parent=Phyra85369;rank=2 scaffold_171 . exon 4172 4487 . - . ID=Phyra85369.2;Parent=Phyra85369;constitutive=1;ensembl_phase=2;rank=2 scaffold_171 . CDS 4656 5836 . - 0 ID=Phyra85369;Parent=Phyra85369;rank=1 scaffold_171 . exon 4656 5836 . - . ID=Phyra85369.1;Parent=Phyra85369;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_171 ensembl protein_coding_gene 6780 7826 . + . ID=Phyra85370;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_171000002;logic_name=jgi_phyra1 scaffold_171 ensembl transcript 6780 7826 . + . ID=Phyra85370;Parent=Phyra85370;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_171 . CDS 6780 7826 . + 0 ID=Phyra85370;Parent=Phyra85370;rank=1 scaffold_171 . exon 6780 7826 . + . ID=Phyra85370.1;Parent=Phyra85370;constitutive=1;rank=1 scaffold_171 . repeat_region 9986 10024 . ? . description=trf scaffold_171 . repeat_region 11549 11603 . ? . description=trf scaffold_171 . repeat_region 12175 12217 . ? . description=trf scaffold_171 . repeat_region 13074 13102 . ? . description=trf scaffold_171 ensembl protein_coding_gene 9956 10447 . + . ID=Phyra85371;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_171000003;logic_name=jgi_phyra1 scaffold_171 ensembl transcript 9956 10447 . + . ID=Phyra85371;Parent=Phyra85371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_171 . CDS 9956 10447 . + 0 ID=Phyra85371;Parent=Phyra85371;rank=1 scaffold_171 . exon 9956 10447 . + . ID=Phyra85371.1;Parent=Phyra85371;constitutive=1;rank=1 scaffold_171 ensembl protein_coding_gene 13058 13609 . + . ID=Phyra85372;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_171000004;logic_name=jgi_phyra1 scaffold_171 ensembl transcript 13058 13609 . + . ID=Phyra85372;Parent=Phyra85372;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_171 . CDS 13058 13609 . + 0 ID=Phyra85372;Parent=Phyra85372;rank=1 scaffold_171 . exon 13058 13609 . + . ID=Phyra85372.1;Parent=Phyra85372;constitutive=1;rank=1 scaffold_171 . repeat_region 16506 46966 . ? . description=dust scaffold_171 . repeat_region 16506 46966 . ? . description=dust scaffold_171 . repeat_region 48453 48859 . ? . description=trf scaffold_171 . repeat_region 48514 48815 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_172 1 49730 scaffold_172 . repeat_region 267 286 . ? . description=trf scaffold_172 . repeat_region 1412 1422 . ? . description=dust scaffold_172 . repeat_region 1611 2663 . ? . description=dust scaffold_172 . repeat_region 9418 9467 . ? . description=dust scaffold_172 ensembl protein_coding_gene 4943 9066 . - . ID=Phyra85373;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_172000001;logic_name=jgi_phyra1 scaffold_172 ensembl transcript 4943 9066 . - . ID=Phyra85373;Parent=Phyra85373;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_172 . CDS 4943 6009 . - 0 ID=Phyra85373;Parent=Phyra85373;rank=4 scaffold_172 . exon 4943 6009 . - . ID=Phyra85373.4;Parent=Phyra85373;constitutive=1;ensembl_phase=1;rank=4 scaffold_172 . CDS 6121 6558 . - 0 ID=Phyra85373;Parent=Phyra85373;rank=3 scaffold_172 . exon 6121 6558 . - . ID=Phyra85373.3;Parent=Phyra85373;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_172 . CDS 6714 7070 . - 0 ID=Phyra85373;Parent=Phyra85373;rank=2 scaffold_172 . exon 6714 7070 . - . ID=Phyra85373.2;Parent=Phyra85373;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_172 . CDS 7362 9066 . - 0 ID=Phyra85373;Parent=Phyra85373;rank=1 scaffold_172 . exon 7362 9066 . - . ID=Phyra85373.1;Parent=Phyra85373;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_172 ensembl protein_coding_gene 9768 11975 . - . ID=Phyra85374;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_172000002;logic_name=jgi_phyra1 scaffold_172 ensembl transcript 9768 11975 . - . ID=Phyra85374;Parent=Phyra85374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_172 . CDS 9768 10918 . - 0 ID=Phyra85374;Parent=Phyra85374;rank=3 scaffold_172 . exon 9768 10918 . - . ID=Phyra85374.3;Parent=Phyra85374;constitutive=1;ensembl_phase=1;rank=3 scaffold_172 . CDS 11224 11947 . - 0 ID=Phyra85374;Parent=Phyra85374;rank=2 scaffold_172 . CDS 11973 11975 . - 0 ID=Phyra85374;Parent=Phyra85374;rank=1 scaffold_172 . biological_region 10185 10186 0.999 - . logic_name=eponine scaffold_172 . repeat_region 14227 17861 . + . description=GypsyPi-1c_I-int scaffold_172 . exon 11224 11947 . - . ID=Phyra85374.2;Parent=Phyra85374;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_172 . exon 11973 11975 . - . ID=Phyra85374.1;Parent=Phyra85374;constitutive=1;rank=1 scaffold_172 ensembl protein_coding_gene 14146 17485 . + . ID=Phyra85375;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_172000003;logic_name=jgi_phyra1 scaffold_172 ensembl transcript 14146 17485 . + . ID=Phyra85375;Parent=Phyra85375;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_172 . CDS 14146 14959 . + 0 ID=Phyra85375;Parent=Phyra85375;rank=1 scaffold_172 . exon 14146 14959 . + . ID=Phyra85375.1;Parent=Phyra85375;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_172 . CDS 14992 15442 . + 0 ID=Phyra85375;Parent=Phyra85375;rank=2 scaffold_172 . exon 14992 15442 . + . ID=Phyra85375.2;Parent=Phyra85375;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_172 . CDS 15610 15629 . + 0 ID=Phyra85375;Parent=Phyra85375;rank=3 scaffold_172 . exon 15610 15629 . + . ID=Phyra85375.3;Parent=Phyra85375;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_172 . CDS 15715 15781 . + 0 ID=Phyra85375;Parent=Phyra85375;rank=4 scaffold_172 . exon 15715 15781 . + . ID=Phyra85375.4;Parent=Phyra85375;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_172 . CDS 15910 16013 . + 0 ID=Phyra85375;Parent=Phyra85375;rank=5 scaffold_172 . exon 15910 16013 . + . ID=Phyra85375.5;Parent=Phyra85375;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_172 . CDS 16056 16468 . + 0 ID=Phyra85375;Parent=Phyra85375;rank=6 scaffold_172 . exon 16056 16468 . + . ID=Phyra85375.6;Parent=Phyra85375;constitutive=1;ensembl_phase=1;rank=6 scaffold_172 . CDS 16519 17412 . + 0 ID=Phyra85375;Parent=Phyra85375;rank=7 scaffold_172 . exon 16519 17412 . + . ID=Phyra85375.7;Parent=Phyra85375;constitutive=1;rank=7 scaffold_172 . CDS 17462 17485 . + 0 ID=Phyra85375;Parent=Phyra85375;rank=8 scaffold_172 . exon 17462 17485 . + . ID=Phyra85375.8;Parent=Phyra85375;constitutive=1;rank=8 scaffold_172 . repeat_region 17890 45902 . ? . description=dust scaffold_172 . repeat_region 17890 45902 . ? . description=dust scaffold_172 . repeat_region 46567 46594 . ? . description=trf scaffold_172 . repeat_region 47188 47978 . ? . description=dust scaffold_172 ensembl pseudogene 48288 48989 . - . ID=Phyra42960;biotype=pseudogene;external_name=gwEuk.172.3.1;logic_name=jgi_phyra1 scaffold_172 ensembl pseudogene 48288 48989 . - . ID=Phyra42960;Parent=Phyra42960;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_172 . exon 48288 48989 . - . ID=Phyra42960.1;Parent=Phyra42960;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_158 1 50734 scaffold_158 . repeat_region 1005 1054 . ? . description=dust scaffold_158 . repeat_region 1539 1552 . ? . description=dust scaffold_158 . repeat_region 6378 6836 . ? . description=trf scaffold_158 ensembl protein_coding_gene 3761 4231 . + . ID=Phyra85269;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_158000001;logic_name=jgi_phyra1 scaffold_158 ensembl transcript 3761 4231 . + . ID=Phyra85269;Parent=Phyra85269;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_158 . CDS 3761 3991 . + 0 ID=Phyra85269;Parent=Phyra85269;rank=1 scaffold_158 . exon 3761 3991 . + . ID=Phyra85269.1;Parent=Phyra85269;constitutive=1;rank=1 scaffold_158 . CDS 4058 4231 . + 0 ID=Phyra85269;Parent=Phyra85269;rank=2 scaffold_158 . exon 4058 4231 . + . ID=Phyra85269.2;Parent=Phyra85269;constitutive=1;rank=2 scaffold_158 ensembl protein_coding_gene 7305 10251 . - . ID=Phyra85270;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_158000002;logic_name=jgi_phyra1 scaffold_158 ensembl transcript 7305 10251 . - . ID=Phyra85270;Parent=Phyra85270;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_158 . CDS 7305 7968 . - 0 ID=Phyra85270;Parent=Phyra85270;rank=2 scaffold_158 . exon 7305 7968 . - . ID=Phyra85270.2;Parent=Phyra85270;constitutive=1;ensembl_phase=2;rank=2 scaffold_158 . CDS 8453 10251 . - 0 ID=Phyra85270;Parent=Phyra85270;rank=1 scaffold_158 . exon 8453 10251 . - . ID=Phyra85270.1;Parent=Phyra85270;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_158 . biological_region 8631 8635 0.999 + . logic_name=eponine scaffold_158 . biological_region 9864 9866 0.999 + . logic_name=eponine scaffold_158 . biological_region 10504 10505 0.999 + . logic_name=eponine scaffold_158 . biological_region 10557 10560 0.999 - . logic_name=eponine scaffold_158 . biological_region 14629 14636 0.999 - . logic_name=eponine scaffold_158 ensembl protein_coding_gene 10472 12145 . + . ID=Phyra97084;biotype=protein_coding;external_name=C_scaffold_158000002;logic_name=jgi_phyra1 scaffold_158 ensembl transcript 10472 12145 . + . ID=Phyra97084;Parent=Phyra97084;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_158 . CDS 10472 10602 . + 0 ID=Phyra97084;Parent=Phyra97084;rank=1 scaffold_158 . exon 10472 10602 . + . ID=Phyra97084.1;Parent=Phyra97084;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_158 . CDS 10630 11623 . + 0 ID=Phyra97084;Parent=Phyra97084;rank=2 scaffold_158 . exon 10630 11623 . + . ID=Phyra97084.2;Parent=Phyra97084;constitutive=1;ensembl_phase=2;rank=2 scaffold_158 . CDS 11702 11911 . + 0 ID=Phyra97084;Parent=Phyra97084;rank=3 scaffold_158 . exon 11702 11911 . + . ID=Phyra97084.3;Parent=Phyra97084;constitutive=1;rank=3 scaffold_158 . CDS 12001 12145 . + 0 ID=Phyra97084;Parent=Phyra97084;rank=4 scaffold_158 . exon 12001 12145 . + . ID=Phyra97084.4;Parent=Phyra97084;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_158 ensembl protein_coding_gene 15933 16478 . - . ID=Phyra97085;biotype=protein_coding;external_name=C_scaffold_158000003;logic_name=jgi_phyra1 scaffold_158 ensembl transcript 15933 16478 . - . ID=Phyra97085;Parent=Phyra97085;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_158 . CDS 15933 16478 . - 0 ID=Phyra97085;Parent=Phyra97085;rank=1 scaffold_158 . exon 15933 16478 . - . ID=Phyra97085.1;Parent=Phyra97085;constitutive=1;rank=1 scaffold_158 . repeat_region 18763 18771 . ? . description=dust scaffold_158 . repeat_region 22752 23143 . ? . description=dust scaffold_158 ensembl protein_coding_gene 17433 31252 . - . ID=Phyra85272;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_158000004;logic_name=jgi_phyra1 scaffold_158 ensembl transcript 17433 31252 . - . ID=Phyra85272;Parent=Phyra85272;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_158 . CDS 17433 17686 . - 0 ID=Phyra85272;Parent=Phyra85272;rank=14 scaffold_158 . exon 17433 17686 . - . ID=Phyra85272.14;Parent=Phyra85272;constitutive=1;ensembl_phase=1;rank=14 scaffold_158 . CDS 17907 17988 . - 0 ID=Phyra85272;Parent=Phyra85272;rank=13 scaffold_158 . exon 17907 17988 . - . ID=Phyra85272.13;Parent=Phyra85272;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_158 . CDS 18468 18570 . - 0 ID=Phyra85272;Parent=Phyra85272;rank=12 scaffold_158 . exon 18468 18570 . - . ID=Phyra85272.12;Parent=Phyra85272;constitutive=1;ensembl_phase=2;rank=12 scaffold_158 . CDS 18664 18707 . - 0 ID=Phyra85272;Parent=Phyra85272;rank=11 scaffold_158 . exon 18664 18707 . - . ID=Phyra85272.11;Parent=Phyra85272;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_158 . CDS 19016 19091 . - 0 ID=Phyra85272;Parent=Phyra85272;rank=10 scaffold_158 . exon 19016 19091 . - . ID=Phyra85272.10;Parent=Phyra85272;constitutive=1;ensembl_phase=2;rank=10 scaffold_158 . CDS 19162 19387 . - 0 ID=Phyra85272;Parent=Phyra85272;rank=9 scaffold_158 . exon 19162 19387 . - . ID=Phyra85272.9;Parent=Phyra85272;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_158 . CDS 19666 19942 . - 0 ID=Phyra85272;Parent=Phyra85272;rank=8 scaffold_158 . exon 19666 19942 . - . ID=Phyra85272.8;Parent=Phyra85272;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_158 . CDS 20024 21034 . - 0 ID=Phyra85272;Parent=Phyra85272;rank=7 scaffold_158 . exon 20024 21034 . - . ID=Phyra85272.7;Parent=Phyra85272;constitutive=1;rank=7 scaffold_158 . CDS 21104 21202 . - 0 ID=Phyra85272;Parent=Phyra85272;rank=6 scaffold_158 . exon 21104 21202 . - . ID=Phyra85272.6;Parent=Phyra85272;constitutive=1;rank=6 scaffold_158 . CDS 21251 21270 . - 0 ID=Phyra85272;Parent=Phyra85272;rank=5 scaffold_158 . exon 21251 21270 . - . ID=Phyra85272.5;Parent=Phyra85272;constitutive=1;ensembl_phase=1;rank=5 scaffold_158 . CDS 21610 21709 . - 0 ID=Phyra85272;Parent=Phyra85272;rank=4 scaffold_158 . exon 21610 21709 . - . ID=Phyra85272.4;Parent=Phyra85272;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_158 . CDS 21783 22654 . - 0 ID=Phyra85272;Parent=Phyra85272;rank=3 scaffold_158 . exon 21783 22654 . - . ID=Phyra85272.3;Parent=Phyra85272;constitutive=1;ensembl_phase=1;rank=3 scaffold_158 . CDS 23190 26608 . - 0 ID=Phyra85272;Parent=Phyra85272;rank=2 scaffold_158 . exon 23190 26608 . - . ID=Phyra85272.2;Parent=Phyra85272;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_158 . CDS 27534 31252 . - 0 ID=Phyra85272;Parent=Phyra85272;rank=1 scaffold_158 . biological_region 32053 32054 0.999 - . logic_name=eponine scaffold_158 . exon 27534 31252 . - . ID=Phyra85272.1;Parent=Phyra85272;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_158 ensembl protein_coding_gene 31732 32343 . + . ID=Phyra85273;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_158000005;logic_name=jgi_phyra1 scaffold_158 ensembl transcript 31732 32343 . + . ID=Phyra85273;Parent=Phyra85273;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_158 . CDS 31732 31805 . + 0 ID=Phyra85273;Parent=Phyra85273;rank=1 scaffold_158 . exon 31732 31805 . + . ID=Phyra85273.1;Parent=Phyra85273;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_158 . CDS 31969 32113 . + 0 ID=Phyra85273;Parent=Phyra85273;rank=2 scaffold_158 . exon 31969 32113 . + . ID=Phyra85273.2;Parent=Phyra85273;constitutive=1;ensembl_phase=2;rank=2 scaffold_158 . CDS 32149 32343 . + 0 ID=Phyra85273;Parent=Phyra85273;rank=3 scaffold_158 . exon 32149 32343 . + . ID=Phyra85273.3;Parent=Phyra85273;constitutive=1;rank=3 scaffold_158 ensembl protein_coding_gene 32962 34954 . + . ID=Phyra85274;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_158000006;logic_name=jgi_phyra1 scaffold_158 ensembl transcript 32962 34954 . + . ID=Phyra85274;Parent=Phyra85274;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_158 . CDS 32962 33093 . + 0 ID=Phyra85274;Parent=Phyra85274;rank=1 scaffold_158 . exon 32962 33093 . + . ID=Phyra85274.1;Parent=Phyra85274;constitutive=1;rank=1 scaffold_158 . CDS 33359 33493 . + 0 ID=Phyra85274;Parent=Phyra85274;rank=2 scaffold_158 . exon 33359 33493 . + . ID=Phyra85274.2;Parent=Phyra85274;constitutive=1;rank=2 scaffold_158 . CDS 33558 33671 . + 0 ID=Phyra85274;Parent=Phyra85274;rank=3 scaffold_158 . exon 33558 33671 . + . ID=Phyra85274.3;Parent=Phyra85274;constitutive=1;rank=3 scaffold_158 . CDS 33746 34954 . + 0 ID=Phyra85274;Parent=Phyra85274;rank=4 scaffold_158 . exon 33746 34954 . + . ID=Phyra85274.4;Parent=Phyra85274;constitutive=1;rank=4 scaffold_158 ensembl protein_coding_gene 35077 42510 . - . ID=Phyra97087;biotype=protein_coding;external_name=C_scaffold_158000005;logic_name=jgi_phyra1 scaffold_158 ensembl transcript 35077 42510 . - . ID=Phyra97087;Parent=Phyra97087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_158 . CDS 35077 35922 . - 0 ID=Phyra97087;Parent=Phyra97087;rank=7 scaffold_158 . exon 35077 35922 . - . ID=Phyra97087.7;Parent=Phyra97087;constitutive=1;rank=7 scaffold_158 . CDS 35983 36966 . - 0 ID=Phyra97087;Parent=Phyra97087;rank=6 scaffold_158 . exon 35983 36966 . - . ID=Phyra97087.6;Parent=Phyra97087;constitutive=1;rank=6 scaffold_158 . CDS 37060 37682 . - 0 ID=Phyra97087;Parent=Phyra97087;rank=5 scaffold_158 . exon 37060 37682 . - . ID=Phyra97087.5;Parent=Phyra97087;constitutive=1;ensembl_phase=1;rank=5 scaffold_158 . CDS 37710 37970 . - 0 ID=Phyra97087;Parent=Phyra97087;rank=4 scaffold_158 . exon 37710 37970 . - . ID=Phyra97087.4;Parent=Phyra97087;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_158 . CDS 38064 39222 . - 0 ID=Phyra97087;Parent=Phyra97087;rank=3 scaffold_158 . exon 38064 39222 . - . ID=Phyra97087.3;Parent=Phyra97087;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_158 . CDS 39437 42352 . - 0 ID=Phyra97087;Parent=Phyra97087;rank=2 scaffold_158 . exon 39437 42352 . - . ID=Phyra97087.2;Parent=Phyra97087;constitutive=1;rank=2 scaffold_158 . CDS 42391 42510 . - 0 ID=Phyra97087;Parent=Phyra97087;rank=1 scaffold_158 . biological_region 44157 44160 0.999 - . logic_name=eponine scaffold_158 . biological_region 48845 48845 0.999 + . logic_name=eponine scaffold_158 . repeat_region 50092 50167 . ? . description=trf scaffold_158 . biological_region 50549 50554 0.999 - . logic_name=eponine scaffold_158 ensembl protein_coding_gene 45518 48025 . + . ID=Phyra72322;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_158000002;logic_name=jgi_phyra1 scaffold_158 ensembl transcript 45518 48025 . + . ID=Phyra72322;Parent=Phyra72322;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_158 . CDS 45518 48025 . + 0 ID=Phyra72322;Parent=Phyra72322;rank=1 scaffold_158 . exon 45518 48025 . + . ID=Phyra72322.1;Parent=Phyra72322;constitutive=1;rank=1 scaffold_158 ensembl protein_coding_gene 43702 45272 . + . ID=Phyra85277;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_158000009;logic_name=jgi_phyra1 scaffold_158 ensembl transcript 43702 45272 . + . ID=Phyra85277;Parent=Phyra85277;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_158 . CDS 43702 43848 . + 0 ID=Phyra85277;Parent=Phyra85277;rank=1 scaffold_158 . exon 43702 43848 . + . ID=Phyra85277.1;Parent=Phyra85277;constitutive=1;rank=1 scaffold_158 . CDS 44027 45109 . + 0 ID=Phyra85277;Parent=Phyra85277;rank=2 scaffold_158 . exon 44027 45109 . + . ID=Phyra85277.2;Parent=Phyra85277;constitutive=1;rank=2 scaffold_158 . CDS 45192 45272 . + 0 ID=Phyra85277;Parent=Phyra85277;rank=3 scaffold_158 . exon 45192 45272 . + . ID=Phyra85277.3;Parent=Phyra85277;constitutive=1;rank=3 scaffold_158 ensembl protein_coding_gene 49525 50286 . + . ID=Phyra85279;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_158000011;logic_name=jgi_phyra1 scaffold_158 ensembl transcript 49525 50286 . + . ID=Phyra85279;Parent=Phyra85279;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_158 . CDS 49525 50286 . + 0 ID=Phyra85279;Parent=Phyra85279;rank=1 scaffold_158 . exon 49525 50286 . + . ID=Phyra85279.1;Parent=Phyra85279;constitutive=1;rank=1 scaffold_158 . exon 42391 42510 . - . ID=Phyra97087.1;Parent=Phyra97087;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_169 1 50786 scaffold_169 . repeat_region 3297 3446 . ? . description=dust scaffold_169 . biological_region 3797 3799 0.999 - . logic_name=eponine scaffold_169 . biological_region 3890 3891 0.999 + . logic_name=eponine scaffold_169 . biological_region 3981 3984 0.999 - . logic_name=eponine scaffold_169 . repeat_region 4918 5196 . - . description=GypsyPi-1c_I-int scaffold_169 . repeat_region 5467 5516 . ? . description=dust scaffold_169 . repeat_region 5786 5799 . ? . description=dust scaffold_169 ensembl protein_coding_gene 54 1946 . + . ID=Phyra85354;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_169000001;logic_name=jgi_phyra1 scaffold_169 ensembl transcript 54 1946 . + . ID=Phyra85354;Parent=Phyra85354;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_169 . CDS 54 338 . + 0 ID=Phyra85354;Parent=Phyra85354;rank=1 scaffold_169 . exon 54 338 . + . ID=Phyra85354.1;Parent=Phyra85354;constitutive=1;rank=1 scaffold_169 . CDS 384 1614 . + 0 ID=Phyra85354;Parent=Phyra85354;rank=2 scaffold_169 . exon 384 1614 . + . ID=Phyra85354.2;Parent=Phyra85354;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_169 . CDS 1660 1946 . + 0 ID=Phyra85354;Parent=Phyra85354;rank=3 scaffold_169 . exon 1660 1946 . + . ID=Phyra85354.3;Parent=Phyra85354;constitutive=1;ensembl_phase=1;rank=3 scaffold_169 ensembl protein_coding_gene 3450 4901 . + . ID=Phyra85355;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_169000002;logic_name=jgi_phyra1 scaffold_169 ensembl transcript 3450 4901 . + . ID=Phyra85355;Parent=Phyra85355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_169 . CDS 3450 4901 . + 0 ID=Phyra85355;Parent=Phyra85355;rank=1 scaffold_169 . exon 3450 4901 . + . ID=Phyra85355.1;Parent=Phyra85355;constitutive=1;rank=1 scaffold_169 ensembl protein_coding_gene 5942 8434 . + . ID=Phyra85356;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_169000003;logic_name=jgi_phyra1 scaffold_169 ensembl transcript 5942 8434 . + . ID=Phyra85356;Parent=Phyra85356;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_169 . CDS 5942 6826 . + 0 ID=Phyra85356;Parent=Phyra85356;rank=1 scaffold_169 . exon 5942 6826 . + . ID=Phyra85356.1;Parent=Phyra85356;constitutive=1;rank=1 scaffold_169 . CDS 6872 8102 . + 0 ID=Phyra85356;Parent=Phyra85356;rank=2 scaffold_169 . exon 6872 8102 . + . ID=Phyra85356.2;Parent=Phyra85356;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_169 . CDS 8148 8434 . + 0 ID=Phyra85356;Parent=Phyra85356;rank=3 scaffold_169 . exon 8148 8434 . + . ID=Phyra85356.3;Parent=Phyra85356;constitutive=1;ensembl_phase=1;rank=3 scaffold_169 . repeat_region 16020 16039 . ? . description=trf scaffold_169 . repeat_region 19771 22557 . ? . description=dust scaffold_169 . repeat_region 24278 24327 . ? . description=dust scaffold_169 ensembl protein_coding_gene 18650 19093 . - . ID=Phyra85357;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_169000004;logic_name=jgi_phyra1 scaffold_169 ensembl transcript 18650 19093 . - . ID=Phyra85357;Parent=Phyra85357;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_169 . CDS 18650 19093 . - 0 ID=Phyra85357;Parent=Phyra85357;rank=1 scaffold_169 . exon 18650 19093 . - . ID=Phyra85357.1;Parent=Phyra85357;constitutive=1;rank=1 scaffold_169 ensembl protein_coding_gene 23408 24427 . + . ID=Phyra85358;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_169000005;logic_name=jgi_phyra1 scaffold_169 ensembl transcript 23408 24427 . + . ID=Phyra85358;Parent=Phyra85358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_169 . CDS 23408 24030 . + 0 ID=Phyra85358;Parent=Phyra85358;rank=1 scaffold_169 . exon 23408 24030 . + . ID=Phyra85358.1;Parent=Phyra85358;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_169 . CDS 24403 24427 . + 0 ID=Phyra85358;Parent=Phyra85358;rank=2 scaffold_169 . exon 24403 24427 . + . ID=Phyra85358.2;Parent=Phyra85358;constitutive=1;ensembl_phase=2;rank=2 scaffold_169 . repeat_region 25778 45029 . ? . description=dust scaffold_169 . repeat_region 46669 46712 . ? . description=trf scaffold_169 ensembl protein_coding_gene 46541 47045 . - . ID=Phyra85359;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_169000006;logic_name=jgi_phyra1 scaffold_169 ensembl transcript 46541 47045 . - . ID=Phyra85359;Parent=Phyra85359;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_169 . CDS 46541 46549 . - 0 ID=Phyra85359;Parent=Phyra85359;rank=2 scaffold_169 . exon 46541 46549 . - . ID=Phyra85359.2;Parent=Phyra85359;constitutive=1;rank=2 scaffold_169 . CDS 46572 47045 . - 0 ID=Phyra85359;Parent=Phyra85359;rank=1 scaffold_169 . exon 46572 47045 . - . ID=Phyra85359.1;Parent=Phyra85359;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_170 1 50867 scaffold_170 . repeat_region 1023 1066 . ? . description=trf scaffold_170 . biological_region 1184 1188 0.999 + . logic_name=eponine scaffold_170 . biological_region 1226 1234 0.999 - . logic_name=eponine scaffold_170 . biological_region 8025 8025 0.999 + . logic_name=eponine scaffold_170 ensembl protein_coding_gene 2954 3565 . - . ID=Phyra42921;biotype=protein_coding;external_name=gwEuk.170.6.1;logic_name=jgi_phyra1 scaffold_170 ensembl transcript 2954 3565 . - . ID=Phyra42921;Parent=Phyra42921;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_170 . CDS 2954 3565 . - 0 ID=Phyra42921;Parent=Phyra42921;rank=1 scaffold_170 . exon 2954 3565 . - . ID=Phyra42921.1;Parent=Phyra42921;constitutive=1;rank=1 scaffold_170 ensembl protein_coding_gene 30 705 . - . ID=Phyra85360;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_170000001;logic_name=jgi_phyra1 scaffold_170 ensembl transcript 30 705 . - . ID=Phyra85360;Parent=Phyra85360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_170 . CDS 30 519 . - 0 ID=Phyra85360;Parent=Phyra85360;rank=2 scaffold_170 . exon 30 519 . - . ID=Phyra85360.2;Parent=Phyra85360;constitutive=1;ensembl_phase=2;rank=2 scaffold_170 . CDS 611 705 . - 0 ID=Phyra85360;Parent=Phyra85360;rank=1 scaffold_170 . exon 611 705 . - . ID=Phyra85360.1;Parent=Phyra85360;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_170 ensembl protein_coding_gene 967 2924 . + . ID=Phyra85361;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_170000002;logic_name=jgi_phyra1 scaffold_170 ensembl transcript 967 2924 . + . ID=Phyra85361;Parent=Phyra85361;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_170 . CDS 967 2329 . + 0 ID=Phyra85361;Parent=Phyra85361;rank=1 scaffold_170 . exon 967 2329 . + . ID=Phyra85361.1;Parent=Phyra85361;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_170 . CDS 2381 2457 . + 0 ID=Phyra85361;Parent=Phyra85361;rank=2 scaffold_170 . exon 2381 2457 . + . ID=Phyra85361.2;Parent=Phyra85361;constitutive=1;ensembl_phase=1;rank=2 scaffold_170 . CDS 2512 2769 . + 0 ID=Phyra85361;Parent=Phyra85361;rank=3 scaffold_170 . exon 2512 2769 . + . ID=Phyra85361.3;Parent=Phyra85361;constitutive=1;rank=3 scaffold_170 . CDS 2907 2924 . + 0 ID=Phyra85361;Parent=Phyra85361;rank=4 scaffold_170 . exon 2907 2924 . + . ID=Phyra85361.4;Parent=Phyra85361;constitutive=1;rank=4 scaffold_170 ensembl protein_coding_gene 4299 6704 . + . ID=Phyra85362;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_170000003;logic_name=jgi_phyra1 scaffold_170 ensembl transcript 4299 6704 . + . ID=Phyra85362;Parent=Phyra85362;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_170 . CDS 4299 6704 . + 0 ID=Phyra85362;Parent=Phyra85362;rank=1 scaffold_170 . exon 4299 6704 . + . ID=Phyra85362.1;Parent=Phyra85362;constitutive=1;rank=1 scaffold_170 . repeat_region 15984 15992 . ? . description=dust scaffold_170 . repeat_region 16075 16086 . ? . description=dust scaffold_170 . repeat_region 16143 16175 . ? . description=dust scaffold_170 . repeat_region 16263 16275 . ? . description=dust scaffold_170 ensembl protein_coding_gene 11260 12387 . - . ID=Phyra42927;biotype=protein_coding;external_name=gwEuk.170.12.1;logic_name=jgi_phyra1 scaffold_170 ensembl transcript 11260 12387 . - . ID=Phyra42927;Parent=Phyra42927;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_170 . CDS 11260 12387 . - 0 ID=Phyra42927;Parent=Phyra42927;rank=1 scaffold_170 . exon 11260 12387 . - . ID=Phyra42927.1;Parent=Phyra42927;constitutive=1;rank=1 scaffold_170 ensembl protein_coding_gene 9417 10125 . - . ID=Phyra85363;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_170000004;logic_name=jgi_phyra1 scaffold_170 ensembl transcript 9417 10125 . - . ID=Phyra85363;Parent=Phyra85363;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_170 . CDS 9417 9500 . - 0 ID=Phyra85363;Parent=Phyra85363;rank=2 scaffold_170 . exon 9417 9500 . - . ID=Phyra85363.2;Parent=Phyra85363;constitutive=1;rank=2 scaffold_170 . CDS 9526 10125 . - 0 ID=Phyra85363;Parent=Phyra85363;rank=1 scaffold_170 . exon 9526 10125 . - . ID=Phyra85363.1;Parent=Phyra85363;constitutive=1;rank=1 scaffold_170 ensembl protein_coding_gene 12867 14828 . - . ID=Phyra85364;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_170000005;logic_name=jgi_phyra1 scaffold_170 ensembl transcript 12867 14828 . - . ID=Phyra85364;Parent=Phyra85364;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_170 . CDS 12867 14828 . - 0 ID=Phyra85364;Parent=Phyra85364;rank=1 scaffold_170 . exon 12867 14828 . - . ID=Phyra85364.1;Parent=Phyra85364;constitutive=1;rank=1 scaffold_170 . biological_region 24829 24831 0.999 - . logic_name=eponine scaffold_170 ensembl protein_coding_gene 21585 22135 . + . ID=Phyra85365;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_170000006;logic_name=jgi_phyra1 scaffold_170 ensembl transcript 21585 22135 . + . ID=Phyra85365;Parent=Phyra85365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_170 . CDS 21585 21604 . + 0 ID=Phyra85365;Parent=Phyra85365;rank=1 scaffold_170 . exon 21585 21604 . + . ID=Phyra85365.1;Parent=Phyra85365;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_170 . CDS 21685 22135 . + 0 ID=Phyra85365;Parent=Phyra85365;rank=2 scaffold_170 . exon 21685 22135 . + . ID=Phyra85365.2;Parent=Phyra85365;constitutive=1;ensembl_phase=2;rank=2 scaffold_170 . repeat_region 25419 25503 . ? . description=dust scaffold_170 . repeat_region 26477 26526 . ? . description=dust scaffold_170 . repeat_region 28010 28045 . ? . description=trf scaffold_170 . repeat_region 28083 28194 . ? . description=dust scaffold_170 . repeat_region 29567 29616 . ? . description=dust scaffold_170 . repeat_region 32438 32496 . ? . description=trf scaffold_170 ensembl protein_coding_gene 25538 26794 . + . ID=Phyra85366;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_170000007;logic_name=jgi_phyra1 scaffold_170 ensembl transcript 25538 26794 . + . ID=Phyra85366;Parent=Phyra85366;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_170 . CDS 25538 26470 . + 0 ID=Phyra85366;Parent=Phyra85366;rank=1 scaffold_170 . exon 25538 26470 . + . ID=Phyra85366.1;Parent=Phyra85366;constitutive=1;rank=1 scaffold_170 . CDS 26762 26794 . + 0 ID=Phyra85366;Parent=Phyra85366;rank=2 scaffold_170 . exon 26762 26794 . + . ID=Phyra85366.2;Parent=Phyra85366;constitutive=1;rank=2 scaffold_170 ensembl protein_coding_gene 31275 34378 . + . ID=Phyra85367;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_170000008;logic_name=jgi_phyra1 scaffold_170 ensembl transcript 31275 34378 . + . ID=Phyra85367;Parent=Phyra85367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_170 . CDS 31275 32205 . + 0 ID=Phyra85367;Parent=Phyra85367;rank=1 scaffold_170 . exon 31275 32205 . + . ID=Phyra85367.1;Parent=Phyra85367;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_170 . CDS 32225 34229 . + 0 ID=Phyra85367;Parent=Phyra85367;rank=2 scaffold_170 . exon 32225 34229 . + . ID=Phyra85367.2;Parent=Phyra85367;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_170 . CDS 34339 34378 . + 0 ID=Phyra85367;Parent=Phyra85367;rank=3 scaffold_170 . biological_region 41480 41481 0.999 + . logic_name=eponine scaffold_170 . biological_region 41732 41735 0.999 - . logic_name=eponine scaffold_170 . biological_region 41973 41976 0.999 + . logic_name=eponine scaffold_170 . biological_region 42026 42028 0.999 - . logic_name=eponine scaffold_170 . biological_region 42061 42064 0.999 - . logic_name=eponine scaffold_170 . biological_region 42085 42085 0.999 - . logic_name=eponine scaffold_170 . biological_region 42117 42123 0.999 - . logic_name=eponine scaffold_170 . exon 34339 34378 . + . ID=Phyra85367.3;Parent=Phyra85367;constitutive=1;ensembl_phase=2;rank=3 scaffold_170 . repeat_region 42415 43959 . ? . description=dust scaffold_170 . repeat_region 44982 44990 . ? . description=dust scaffold_170 . repeat_region 47669 47680 . ? . description=dust scaffold_170 . repeat_region 48511 48560 . ? . description=dust scaffold_170 . repeat_region 48599 48634 . ? . description=trf scaffold_170 . repeat_region 49710 49759 . ? . description=dust scaffold_170 . repeat_region 49906 49948 . ? . description=trf scaffold_170 . repeat_region 49907 49949 . ? . description=trf scaffold_170 ensembl protein_coding_gene 47182 47736 . + . ID=Phyra85368;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_170000009;logic_name=jgi_phyra1 scaffold_170 ensembl transcript 47182 47736 . + . ID=Phyra85368;Parent=Phyra85368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_170 . CDS 47182 47201 . + 0 ID=Phyra85368;Parent=Phyra85368;rank=1 scaffold_170 . exon 47182 47201 . + . ID=Phyra85368.1;Parent=Phyra85368;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_170 . CDS 47282 47634 . + 0 ID=Phyra85368;Parent=Phyra85368;rank=2 scaffold_170 . exon 47282 47634 . + . ID=Phyra85368.2;Parent=Phyra85368;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_170 . CDS 47699 47736 . + 0 ID=Phyra85368;Parent=Phyra85368;rank=3 scaffold_170 . exon 47699 47736 . + . ID=Phyra85368.3;Parent=Phyra85368;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_168 1 51124 scaffold_168 . repeat_region 1 206 . + . description=(CCCTAA)n scaffold_168 . repeat_region 1 240 . ? . description=dust scaffold_168 . repeat_region 4 240 . ? . description=trf scaffold_168 . repeat_region 707 749 . ? . description=trf scaffold_168 . repeat_region 897 30236 . ? . description=dust scaffold_168 . repeat_region 897 30236 . ? . description=dust scaffold_168 . repeat_region 31985 32004 . ? . description=trf scaffold_168 . biological_region 32200 32207 0.999 + . logic_name=eponine scaffold_168 . biological_region 33453 33453 0.999 + . logic_name=eponine scaffold_168 . biological_region 33497 33501 0.999 - . logic_name=eponine scaffold_168 . biological_region 33552 33556 0.999 + . logic_name=eponine scaffold_168 . biological_region 33592 33593 0.999 - . logic_name=eponine scaffold_168 . repeat_region 36801 36850 . ? . description=dust scaffold_168 . repeat_region 38988 39039 . ? . description=dust scaffold_168 . repeat_region 39156 39206 . ? . description=dust scaffold_168 . repeat_region 41101 41366 . ? . description=dust scaffold_168 ensembl protein_coding_gene 40163 42161 . + . ID=Phyra85352;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_168000001;logic_name=jgi_phyra1 scaffold_168 ensembl transcript 40163 42161 . + . ID=Phyra85352;Parent=Phyra85352;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_168 . CDS 40163 41020 . + 0 ID=Phyra85352;Parent=Phyra85352;rank=1 scaffold_168 . exon 40163 41020 . + . ID=Phyra85352.1;Parent=Phyra85352;constitutive=1;rank=1 scaffold_168 . CDS 41401 42085 . + 0 ID=Phyra85352;Parent=Phyra85352;rank=2 scaffold_168 . exon 41401 42085 . + . ID=Phyra85352.2;Parent=Phyra85352;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_168 . CDS 42151 42161 . + 0 ID=Phyra85352;Parent=Phyra85352;rank=3 scaffold_168 . exon 42151 42161 . + . ID=Phyra85352.3;Parent=Phyra85352;constitutive=1;ensembl_phase=1;rank=3 scaffold_168 . biological_region 47994 47999 0.999 + . logic_name=eponine scaffold_168 . repeat_region 48017 48045 . ? . description=trf scaffold_168 . biological_region 48024 48028 0.999 + . logic_name=eponine scaffold_168 . biological_region 49636 49637 0.999 + . logic_name=eponine scaffold_168 ensembl protein_coding_gene 43360 43929 . + . ID=Phyra42792;biotype=protein_coding;external_name=gwEuk.168.3.1;logic_name=jgi_phyra1 scaffold_168 ensembl transcript 43360 43929 . + . ID=Phyra42792;Parent=Phyra42792;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_168 . CDS 43360 43929 . + 0 ID=Phyra42792;Parent=Phyra42792;rank=1 scaffold_168 . exon 43360 43929 . + . ID=Phyra42792.1;Parent=Phyra42792;constitutive=1;rank=1 scaffold_168 ensembl protein_coding_gene 49243 50150 . + . ID=Phyra85353;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_168000002;logic_name=jgi_phyra1 scaffold_168 ensembl transcript 49243 50150 . + . ID=Phyra85353;Parent=Phyra85353;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_168 . CDS 49243 49959 . + 0 ID=Phyra85353;Parent=Phyra85353;rank=1 scaffold_168 . exon 49243 49959 . + . ID=Phyra85353.1;Parent=Phyra85353;constitutive=1;rank=1 scaffold_168 . CDS 50139 50150 . + 0 ID=Phyra85353;Parent=Phyra85353;rank=2 scaffold_168 . exon 50139 50150 . + . ID=Phyra85353.2;Parent=Phyra85353;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_167 1 51249 scaffold_167 . repeat_region 12 64 . ? . description=dust scaffold_167 . biological_region 85 92 0.999 - . logic_name=eponine scaffold_167 . biological_region 353 354 0.999 - . logic_name=eponine scaffold_167 . biological_region 865 868 0.999 + . logic_name=eponine scaffold_167 . biological_region 1079 1079 0.999 - . logic_name=eponine scaffold_167 . biological_region 2036 2041 0.999 + . logic_name=eponine scaffold_167 . biological_region 3847 3848 0.999 - . logic_name=eponine scaffold_167 . biological_region 4143 4145 0.999 - . logic_name=eponine scaffold_167 . biological_region 4204 4206 0.999 + . logic_name=eponine scaffold_167 . biological_region 4220 4227 0.999 + . logic_name=eponine scaffold_167 . biological_region 4689 4690 0.999 - . logic_name=eponine scaffold_167 . biological_region 5025 5027 0.999 + . logic_name=eponine scaffold_167 . biological_region 5912 5917 0.999 - . logic_name=eponine scaffold_167 . biological_region 5966 5970 0.999 + . logic_name=eponine scaffold_167 ensembl protein_coding_gene 1500 2467 . + . ID=Phyra85338;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_167000001;logic_name=jgi_phyra1 scaffold_167 ensembl transcript 1500 2467 . + . ID=Phyra85338;Parent=Phyra85338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_167 . CDS 1500 1508 . + 0 ID=Phyra85338;Parent=Phyra85338;rank=1 scaffold_167 . exon 1500 1508 . + . ID=Phyra85338.1;Parent=Phyra85338;constitutive=1;rank=1 scaffold_167 . CDS 1602 1874 . + 0 ID=Phyra85338;Parent=Phyra85338;rank=2 scaffold_167 . exon 1602 1874 . + . ID=Phyra85338.2;Parent=Phyra85338;constitutive=1;rank=2 scaffold_167 . CDS 1898 2467 . + 0 ID=Phyra85338;Parent=Phyra85338;rank=3 scaffold_167 . exon 1898 2467 . + . ID=Phyra85338.3;Parent=Phyra85338;constitutive=1;rank=3 scaffold_167 ensembl protein_coding_gene 3187 4455 . - . ID=Phyra85339;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_167000002;logic_name=jgi_phyra1 scaffold_167 ensembl transcript 3187 4455 . - . ID=Phyra85339;Parent=Phyra85339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_167 . CDS 3187 4455 . - 0 ID=Phyra85339;Parent=Phyra85339;rank=1 scaffold_167 . exon 3187 4455 . - . ID=Phyra85339.1;Parent=Phyra85339;constitutive=1;rank=1 scaffold_167 ensembl protein_coding_gene 4951 6210 . - . ID=Phyra85340;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_167000003;logic_name=jgi_phyra1 scaffold_167 ensembl transcript 4951 6210 . - . ID=Phyra85340;Parent=Phyra85340;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_167 . CDS 4951 6210 . - 0 ID=Phyra85340;Parent=Phyra85340;rank=1 scaffold_167 . exon 4951 6210 . - . ID=Phyra85340.1;Parent=Phyra85340;constitutive=1;rank=1 scaffold_167 ensembl protein_coding_gene 6874 9225 . + . ID=Phyra85341;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_167000004;logic_name=jgi_phyra1 scaffold_167 ensembl transcript 6874 9225 . + . ID=Phyra85341;Parent=Phyra85341;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_167 . CDS 6874 7354 . + 0 ID=Phyra85341;Parent=Phyra85341;rank=1 scaffold_167 . exon 6874 7354 . + . ID=Phyra85341.1;Parent=Phyra85341;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_167 . CDS 7417 8038 . + 0 ID=Phyra85341;Parent=Phyra85341;rank=2 scaffold_167 . exon 7417 8038 . + . ID=Phyra85341.2;Parent=Phyra85341;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_167 . CDS 8180 8795 . + 0 ID=Phyra85341;Parent=Phyra85341;rank=3 scaffold_167 . exon 8180 8795 . + . ID=Phyra85341.3;Parent=Phyra85341;constitutive=1;ensembl_phase=2;rank=3 scaffold_167 . CDS 8866 9225 . + 0 ID=Phyra85341;Parent=Phyra85341;rank=4 scaffold_167 . repeat_region 12790 12817 . ? . description=trf scaffold_167 . exon 8866 9225 . + . ID=Phyra85341.4;Parent=Phyra85341;constitutive=1;rank=4 scaffold_167 ensembl protein_coding_gene 12333 13769 . - . ID=Phyra85343;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_167000006;logic_name=jgi_phyra1 scaffold_167 ensembl transcript 12333 13769 . - . ID=Phyra85343;Parent=Phyra85343;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_167 . CDS 12333 12488 . - 0 ID=Phyra85343;Parent=Phyra85343;rank=3 scaffold_167 . exon 12333 12488 . - . ID=Phyra85343.3;Parent=Phyra85343;constitutive=1;rank=3 scaffold_167 . CDS 12560 12744 . - 0 ID=Phyra85343;Parent=Phyra85343;rank=2 scaffold_167 . exon 12560 12744 . - . ID=Phyra85343.2;Parent=Phyra85343;constitutive=1;ensembl_phase=1;rank=2 scaffold_167 . CDS 12824 13769 . - 0 ID=Phyra85343;Parent=Phyra85343;rank=1 scaffold_167 . exon 12824 13769 . - . ID=Phyra85343.1;Parent=Phyra85343;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_167 ensembl protein_coding_gene 10173 12197 . - . ID=Phyra97106;biotype=protein_coding;external_name=C_scaffold_167000001;logic_name=jgi_phyra1 scaffold_167 ensembl transcript 10173 12197 . - . ID=Phyra97106;Parent=Phyra97106;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_167 . CDS 10173 10240 . - 0 ID=Phyra97106;Parent=Phyra97106;rank=7 scaffold_167 . exon 10173 10240 . - . ID=Phyra97106.7;Parent=Phyra97106;constitutive=1;ensembl_phase=1;rank=7 scaffold_167 . CDS 10340 10517 . - 0 ID=Phyra97106;Parent=Phyra97106;rank=6 scaffold_167 . exon 10340 10517 . - . ID=Phyra97106.6;Parent=Phyra97106;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_167 . CDS 11230 11364 . - 0 ID=Phyra97106;Parent=Phyra97106;rank=5 scaffold_167 . exon 11230 11364 . - . ID=Phyra97106.5;Parent=Phyra97106;constitutive=1;rank=5 scaffold_167 . CDS 11435 11626 . - 0 ID=Phyra97106;Parent=Phyra97106;rank=4 scaffold_167 . exon 11435 11626 . - . ID=Phyra97106.4;Parent=Phyra97106;constitutive=1;rank=4 scaffold_167 . CDS 11651 11836 . - 0 ID=Phyra97106;Parent=Phyra97106;rank=3 scaffold_167 . exon 11651 11836 . - . ID=Phyra97106.3;Parent=Phyra97106;constitutive=1;rank=3 scaffold_167 . CDS 11907 11986 . - 0 ID=Phyra97106;Parent=Phyra97106;rank=2 scaffold_167 . exon 11907 11986 . - . ID=Phyra97106.2;Parent=Phyra97106;constitutive=1;ensembl_phase=1;rank=2 scaffold_167 . CDS 12095 12197 . - 0 ID=Phyra97106;Parent=Phyra97106;rank=1 scaffold_167 . exon 12095 12197 . - . ID=Phyra97106.1;Parent=Phyra97106;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_167 ensembl protein_coding_gene 13964 15307 . + . ID=Phyra97111;biotype=protein_coding;external_name=C_scaffold_167000006;logic_name=jgi_phyra1 scaffold_167 ensembl transcript 13964 15307 . + . ID=Phyra97111;Parent=Phyra97111;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_167 . CDS 13964 14209 . + 0 ID=Phyra97111;Parent=Phyra97111;rank=1 scaffold_167 . exon 13964 14209 . + . ID=Phyra97111.1;Parent=Phyra97111;constitutive=1;rank=1 scaffold_167 . CDS 14243 14647 . + 0 ID=Phyra97111;Parent=Phyra97111;rank=2 scaffold_167 . exon 14243 14647 . + . ID=Phyra97111.2;Parent=Phyra97111;constitutive=1;rank=2 scaffold_167 . CDS 14719 14840 . + 0 ID=Phyra97111;Parent=Phyra97111;rank=3 scaffold_167 . exon 14719 14840 . + . ID=Phyra97111.3;Parent=Phyra97111;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_167 . CDS 14913 15041 . + 0 ID=Phyra97111;Parent=Phyra97111;rank=4 scaffold_167 . exon 14913 15041 . + . ID=Phyra97111.4;Parent=Phyra97111;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_167 . CDS 15121 15307 . + 0 ID=Phyra97111;Parent=Phyra97111;rank=5 scaffold_167 . exon 15121 15307 . + . ID=Phyra97111.5;Parent=Phyra97111;constitutive=1;ensembl_phase=2;rank=5 scaffold_167 ensembl protein_coding_gene 15479 17509 . + . ID=Phyra97112;biotype=protein_coding;external_name=C_scaffold_167000007;logic_name=jgi_phyra1 scaffold_167 ensembl transcript 15479 17509 . + . ID=Phyra97112;Parent=Phyra97112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_167 . CDS 15479 15508 . + 0 ID=Phyra97112;Parent=Phyra97112;rank=1 scaffold_167 . exon 15479 15508 . + . ID=Phyra97112.1;Parent=Phyra97112;constitutive=1;rank=1 scaffold_167 . CDS 15569 15727 . + 0 ID=Phyra97112;Parent=Phyra97112;rank=2 scaffold_167 . exon 15569 15727 . + . ID=Phyra97112.2;Parent=Phyra97112;constitutive=1;rank=2 scaffold_167 . CDS 15813 16032 . + 0 ID=Phyra97112;Parent=Phyra97112;rank=3 scaffold_167 . exon 15813 16032 . + . ID=Phyra97112.3;Parent=Phyra97112;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_167 . CDS 16127 16236 . + 0 ID=Phyra97112;Parent=Phyra97112;rank=4 scaffold_167 . exon 16127 16236 . + . ID=Phyra97112.4;Parent=Phyra97112;constitutive=1;ensembl_phase=1;rank=4 scaffold_167 . CDS 16317 16390 . + 0 ID=Phyra97112;Parent=Phyra97112;rank=5 scaffold_167 . exon 16317 16390 . + . ID=Phyra97112.5;Parent=Phyra97112;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_167 . CDS 17037 17253 . + 0 ID=Phyra97112;Parent=Phyra97112;rank=6 scaffold_167 . exon 17037 17253 . + . ID=Phyra97112.6;Parent=Phyra97112;constitutive=1;ensembl_phase=2;rank=6 scaffold_167 . CDS 17507 17509 . + 0 ID=Phyra97112;Parent=Phyra97112;rank=7 scaffold_167 . biological_region 17901 17904 0.999 - . logic_name=eponine scaffold_167 . biological_region 18516 18520 0.999 - . logic_name=eponine scaffold_167 . repeat_region 19540 19589 . ? . description=dust scaffold_167 . repeat_region 20236 20320 . ? . description=dust scaffold_167 . repeat_region 21323 37082 . ? . description=dust scaffold_167 ensembl tRNA_gene 20121 20193 . - . ID=EPrPRAG00000000034;biotype=tRNA;description=tRNA-Ala for anticodon CGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_167 ensembl transcript 20121 20193 . - . ID=EPrPRAT00000000034;Parent=EPrPRAG00000000034;biotype=tRNA;logic_name=ncrna_eg scaffold_167 . exon 20121 20193 . - . ID=EPrPRAE00000000034;Parent=EPrPRAT00000000034;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_167 . exon 17507 17509 . + . ID=Phyra97112.7;Parent=Phyra97112;constitutive=1;rank=7 scaffold_167 . repeat_region 21323 37082 . ? . description=dust scaffold_167 . repeat_region 42014 42023 . ? . description=dust scaffold_167 ensembl protein_coding_gene 37324 38415 . - . ID=Phyra85346;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_167000009;logic_name=jgi_phyra1 scaffold_167 ensembl transcript 37324 38415 . - . ID=Phyra85346;Parent=Phyra85346;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_167 . CDS 37324 38415 . - 0 ID=Phyra85346;Parent=Phyra85346;rank=1 scaffold_167 . exon 37324 38415 . - . ID=Phyra85346.1;Parent=Phyra85346;constitutive=1;rank=1 scaffold_167 ensembl protein_coding_gene 39038 40123 . - . ID=Phyra85347;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_167000010;logic_name=jgi_phyra1 scaffold_167 ensembl transcript 39038 40123 . - . ID=Phyra85347;Parent=Phyra85347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_167 . CDS 39038 40123 . - 0 ID=Phyra85347;Parent=Phyra85347;rank=1 scaffold_167 . exon 39038 40123 . - . ID=Phyra85347.1;Parent=Phyra85347;constitutive=1;rank=1 scaffold_167 ensembl protein_coding_gene 40785 41863 . - . ID=Phyra85348;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_167000011;logic_name=jgi_phyra1 scaffold_167 ensembl transcript 40785 41863 . - . ID=Phyra85348;Parent=Phyra85348;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_167 . CDS 40785 41450 . - 0 ID=Phyra85348;Parent=Phyra85348;rank=2 scaffold_167 . exon 40785 41450 . - . ID=Phyra85348.2;Parent=Phyra85348;constitutive=1;rank=2 scaffold_167 . CDS 41537 41863 . - 0 ID=Phyra85348;Parent=Phyra85348;rank=1 scaffold_167 . exon 41537 41863 . - . ID=Phyra85348.1;Parent=Phyra85348;constitutive=1;rank=1 scaffold_167 ensembl protein_coding_gene 42213 44023 . + . ID=Phyra85349;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_167000012;logic_name=jgi_phyra1 scaffold_167 ensembl transcript 42213 44023 . + . ID=Phyra85349;Parent=Phyra85349;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_167 . CDS 42213 43891 . + 0 ID=Phyra85349;Parent=Phyra85349;rank=1 scaffold_167 . exon 42213 43891 . + . ID=Phyra85349.1;Parent=Phyra85349;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_167 . CDS 43936 44023 . + 0 ID=Phyra85349;Parent=Phyra85349;rank=2 scaffold_167 . biological_region 49329 49329 0.999 + . logic_name=eponine scaffold_167 . biological_region 50004 50008 0.999 - . logic_name=eponine scaffold_167 . exon 43936 44023 . + . ID=Phyra85349.2;Parent=Phyra85349;constitutive=1;ensembl_phase=2;rank=2 scaffold_167 ensembl protein_coding_gene 45102 46206 . + . ID=Phyra85350;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_167000013;logic_name=jgi_phyra1 scaffold_167 ensembl transcript 45102 46206 . + . ID=Phyra85350;Parent=Phyra85350;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_167 . CDS 45102 46133 . + 0 ID=Phyra85350;Parent=Phyra85350;rank=1 scaffold_167 . exon 45102 46133 . + . ID=Phyra85350.1;Parent=Phyra85350;constitutive=1;rank=1 scaffold_167 . CDS 46183 46206 . + 0 ID=Phyra85350;Parent=Phyra85350;rank=2 scaffold_167 . exon 46183 46206 . + . ID=Phyra85350.2;Parent=Phyra85350;constitutive=1;rank=2 scaffold_167 ensembl protein_coding_gene 49519 51156 . + . ID=Phyra85351;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_167000014;logic_name=jgi_phyra1 scaffold_167 ensembl transcript 49519 51156 . + . ID=Phyra85351;Parent=Phyra85351;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_167 . CDS 49519 51156 . + 0 ID=Phyra85351;Parent=Phyra85351;rank=1 scaffold_167 . exon 49519 51156 . + . ID=Phyra85351.1;Parent=Phyra85351;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_164 1 52575 scaffold_164 . repeat_region 993 6829 . ? . description=dust scaffold_164 . biological_region 7031 7036 0.999 - . logic_name=eponine scaffold_164 . repeat_region 8695 8900 . ? . description=dust scaffold_164 . repeat_region 12116 38096 . ? . description=dust scaffold_164 . repeat_region 12116 38096 . ? . description=dust scaffold_164 . repeat_region 40555 41200 . ? . description=dust scaffold_164 . repeat_region 42551 43924 . ? . description=dust scaffold_164 . repeat_region 46989 47008 . ? . description=trf scaffold_164 . repeat_region 47174 47271 . ? . description=trf scaffold_164 . biological_region 52251 52255 0.999 - . logic_name=eponine scaffold_164 ensembl protein_coding_gene 44616 47511 . - . ID=Phyra85334;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_164000001;logic_name=jgi_phyra1 scaffold_164 ensembl transcript 44616 47511 . - . ID=Phyra85334;Parent=Phyra85334;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_164 . CDS 44616 45676 . - 0 ID=Phyra85334;Parent=Phyra85334;rank=2 scaffold_164 . exon 44616 45676 . - . ID=Phyra85334.2;Parent=Phyra85334;constitutive=1;ensembl_phase=1;rank=2 scaffold_164 . CDS 45978 47511 . - 0 ID=Phyra85334;Parent=Phyra85334;rank=1 scaffold_164 . exon 45978 47511 . - . ID=Phyra85334.1;Parent=Phyra85334;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_166 1 52707 scaffold_166 . biological_region 546 548 0.999 + . logic_name=eponine scaffold_166 . biological_region 591 598 0.999 + . logic_name=eponine scaffold_166 . biological_region 753 757 0.999 + . logic_name=eponine scaffold_166 . biological_region 856 858 0.999 - . logic_name=eponine scaffold_166 . repeat_region 2097 2444 . ? . description=dust scaffold_166 . repeat_region 5924 6013 . ? . description=trf scaffold_166 . repeat_region 6756 10962 . ? . description=dust scaffold_166 ensembl protein_coding_gene 2542 2898 . + . ID=Phyra42757;biotype=protein_coding;external_name=gwEuk.166.1.1;logic_name=jgi_phyra1 scaffold_166 ensembl transcript 2542 2898 . + . ID=Phyra42757;Parent=Phyra42757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_166 . CDS 2542 2898 . + 0 ID=Phyra42757;Parent=Phyra42757;rank=1 scaffold_166 . exon 2542 2898 . + . ID=Phyra42757.1;Parent=Phyra42757;constitutive=1;rank=1 scaffold_166 ensembl pseudogene 3364 3716 . + . ID=Phyra42758;biotype=pseudogene;external_name=gwEuk.166.2.1;logic_name=jgi_phyra1 scaffold_166 ensembl pseudogene 3364 3716 . + . ID=Phyra42758;Parent=Phyra42758;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_166 . exon 3364 3716 . + . ID=Phyra42758.1;Parent=Phyra42758;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_166 ensembl protein_coding_gene 11225 11755 . + . ID=Phyra85336;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_166000001;logic_name=jgi_phyra1 scaffold_166 ensembl transcript 11225 11755 . + . ID=Phyra85336;Parent=Phyra85336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_166 . CDS 11225 11755 . + 0 ID=Phyra85336;Parent=Phyra85336;rank=1 scaffold_166 . exon 11225 11755 . + . ID=Phyra85336.1;Parent=Phyra85336;constitutive=1;rank=1 scaffold_166 . repeat_region 16543 44886 . ? . description=dust scaffold_166 . repeat_region 16543 44886 . ? . description=dust scaffold_166 . biological_region 45491 45492 0.999 + . logic_name=eponine scaffold_166 ensembl protein_coding_gene 48143 49817 . - . ID=Phyra85337;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_166000002;logic_name=jgi_phyra1 scaffold_166 ensembl transcript 48143 49817 . - . ID=Phyra85337;Parent=Phyra85337;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_166 . CDS 48143 48163 . - 0 ID=Phyra85337;Parent=Phyra85337;rank=2 scaffold_166 . exon 48143 48163 . - . ID=Phyra85337.2;Parent=Phyra85337;constitutive=1;rank=2 scaffold_166 . CDS 48219 49817 . - 0 ID=Phyra85337;Parent=Phyra85337;rank=1 scaffold_166 . exon 48219 49817 . - . ID=Phyra85337.1;Parent=Phyra85337;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_165 1 52839 scaffold_165 . repeat_region 1 234 . ? . description=dust scaffold_165 . repeat_region 1 235 . ? . description=trf scaffold_165 . repeat_region 257 280 . ? . description=trf scaffold_165 . repeat_region 774 816 . ? . description=trf scaffold_165 . repeat_region 904 28706 . ? . description=dust scaffold_165 . repeat_region 904 28706 . ? . description=dust scaffold_165 . repeat_region 32483 32529 . ? . description=trf scaffold_165 . repeat_region 36969 38509 . ? . description=dust scaffold_165 ensembl protein_coding_gene 44039 44971 . - . ID=Phyra85335;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_165000001;logic_name=jgi_phyra1 scaffold_165 ensembl transcript 44039 44971 . - . ID=Phyra85335;Parent=Phyra85335;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_165 . CDS 44039 44971 . - 0 ID=Phyra85335;Parent=Phyra85335;rank=1 scaffold_165 . exon 44039 44971 . - . ID=Phyra85335.1;Parent=Phyra85335;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_163 1 52956 scaffold_163 . biological_region 76 79 0.999 + . logic_name=eponine scaffold_163 . repeat_region 96 103 . ? . description=dust scaffold_163 . biological_region 102 104 0.999 + . logic_name=eponine scaffold_163 . biological_region 126 128 0.999 + . logic_name=eponine scaffold_163 . biological_region 166 166 0.999 + . logic_name=eponine scaffold_163 . biological_region 1493 1497 0.999 + . logic_name=eponine scaffold_163 . biological_region 2577 2577 0.999 + . logic_name=eponine scaffold_163 ensembl protein_coding_gene 92 919 . + . ID=Phyra85314;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_163000001;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 92 919 . + . ID=Phyra85314;Parent=Phyra85314;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 92 919 . + 0 ID=Phyra85314;Parent=Phyra85314;rank=1 scaffold_163 . exon 92 919 . + . ID=Phyra85314.1;Parent=Phyra85314;constitutive=1;rank=1 scaffold_163 ensembl protein_coding_gene 1224 2717 . + . ID=Phyra85315;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_163000002;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 1224 2717 . + . ID=Phyra85315;Parent=Phyra85315;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 1224 2717 . + 0 ID=Phyra85315;Parent=Phyra85315;rank=1 scaffold_163 . exon 1224 2717 . + . ID=Phyra85315.1;Parent=Phyra85315;constitutive=1;rank=1 scaffold_163 ensembl protein_coding_gene 3385 6606 . + . ID=Phyra85316;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_163000003;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 3385 6606 . + . ID=Phyra85316;Parent=Phyra85316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 3385 4899 . + 0 ID=Phyra85316;Parent=Phyra85316;rank=1 scaffold_163 . exon 3385 4899 . + . ID=Phyra85316.1;Parent=Phyra85316;constitutive=1;rank=1 scaffold_163 . CDS 5038 6606 . + 0 ID=Phyra85316;Parent=Phyra85316;rank=2 scaffold_163 . exon 5038 6606 . + . ID=Phyra85316.2;Parent=Phyra85316;constitutive=1;rank=2 scaffold_163 ensembl protein_coding_gene 8281 9738 . + . ID=Phyra85317;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_163000004;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 8281 9738 . + . ID=Phyra85317;Parent=Phyra85317;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 8281 9738 . + 0 ID=Phyra85317;Parent=Phyra85317;rank=1 scaffold_163 . exon 8281 9738 . + . ID=Phyra85317.1;Parent=Phyra85317;constitutive=1;rank=1 scaffold_163 . repeat_region 10117 10159 . ? . description=trf scaffold_163 . repeat_region 10782 10813 . ? . description=trf scaffold_163 ensembl protein_coding_gene 9897 14229 . - . ID=Phyra85318;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_163000005;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 9897 14229 . - . ID=Phyra85318;Parent=Phyra85318;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 9897 9971 . - 0 ID=Phyra85318;Parent=Phyra85318;rank=12 scaffold_163 . exon 9897 9971 . - . ID=Phyra85318.12;Parent=Phyra85318;constitutive=1;rank=12 scaffold_163 . CDS 10046 10589 . - 0 ID=Phyra85318;Parent=Phyra85318;rank=11 scaffold_163 . exon 10046 10589 . - . ID=Phyra85318.11;Parent=Phyra85318;constitutive=1;ensembl_phase=2;rank=11 scaffold_163 . CDS 10717 11686 . - 0 ID=Phyra85318;Parent=Phyra85318;rank=10 scaffold_163 . exon 10717 11686 . - . ID=Phyra85318.10;Parent=Phyra85318;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_163 . CDS 11843 12100 . - 0 ID=Phyra85318;Parent=Phyra85318;rank=9 scaffold_163 . exon 11843 12100 . - . ID=Phyra85318.9;Parent=Phyra85318;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_163 . CDS 12194 12241 . - 0 ID=Phyra85318;Parent=Phyra85318;rank=8 scaffold_163 . exon 12194 12241 . - . ID=Phyra85318.8;Parent=Phyra85318;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_163 . CDS 12359 12441 . - 0 ID=Phyra85318;Parent=Phyra85318;rank=7 scaffold_163 . exon 12359 12441 . - . ID=Phyra85318.7;Parent=Phyra85318;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_163 . CDS 12629 12645 . - 0 ID=Phyra85318;Parent=Phyra85318;rank=6 scaffold_163 . exon 12629 12645 . - . ID=Phyra85318.6;Parent=Phyra85318;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_163 . CDS 12747 12994 . - 0 ID=Phyra85318;Parent=Phyra85318;rank=5 scaffold_163 . exon 12747 12994 . - . ID=Phyra85318.5;Parent=Phyra85318;constitutive=1;ensembl_phase=1;rank=5 scaffold_163 . CDS 13084 13257 . - 0 ID=Phyra85318;Parent=Phyra85318;rank=4 scaffold_163 . exon 13084 13257 . - . ID=Phyra85318.4;Parent=Phyra85318;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_163 . CDS 13355 13403 . - 0 ID=Phyra85318;Parent=Phyra85318;rank=3 scaffold_163 . exon 13355 13403 . - . ID=Phyra85318.3;Parent=Phyra85318;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_163 . CDS 13482 13755 . - 0 ID=Phyra85318;Parent=Phyra85318;rank=2 scaffold_163 . exon 13482 13755 . - . ID=Phyra85318.2;Parent=Phyra85318;constitutive=1;ensembl_phase=2;rank=2 scaffold_163 . CDS 13832 14229 . - 0 ID=Phyra85318;Parent=Phyra85318;rank=1 scaffold_163 . exon 13832 14229 . - . ID=Phyra85318.1;Parent=Phyra85318;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_163 ensembl protein_coding_gene 14817 17503 . + . ID=Phyra85319;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_163000006;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 14817 17503 . + . ID=Phyra85319;Parent=Phyra85319;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 14817 15635 . + 0 ID=Phyra85319;Parent=Phyra85319;rank=1 scaffold_163 . exon 14817 15635 . + . ID=Phyra85319.1;Parent=Phyra85319;constitutive=1;rank=1 scaffold_163 . CDS 15696 15821 . + 0 ID=Phyra85319;Parent=Phyra85319;rank=2 scaffold_163 . exon 15696 15821 . + . ID=Phyra85319.2;Parent=Phyra85319;constitutive=1;rank=2 scaffold_163 . CDS 15893 16535 . + 0 ID=Phyra85319;Parent=Phyra85319;rank=3 scaffold_163 . exon 15893 16535 . + . ID=Phyra85319.3;Parent=Phyra85319;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_163 . CDS 17043 17150 . + 0 ID=Phyra85319;Parent=Phyra85319;rank=4 scaffold_163 . exon 17043 17150 . + . ID=Phyra85319.4;Parent=Phyra85319;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_163 . CDS 17283 17503 . + 0 ID=Phyra85319;Parent=Phyra85319;rank=5 scaffold_163 . exon 17283 17503 . + . ID=Phyra85319.5;Parent=Phyra85319;constitutive=1;ensembl_phase=1;rank=5 scaffold_163 . biological_region 21576 21579 0.999 + . logic_name=eponine scaffold_163 . biological_region 22660 22664 0.999 - . logic_name=eponine scaffold_163 . biological_region 22714 22720 0.999 + . logic_name=eponine scaffold_163 . biological_region 22790 22790 0.999 - . logic_name=eponine scaffold_163 ensembl protein_coding_gene 19466 21109 . - . ID=Phyra85320;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_163000007;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 19466 21109 . - . ID=Phyra85320;Parent=Phyra85320;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 19466 19485 . - 0 ID=Phyra85320;Parent=Phyra85320;rank=3 scaffold_163 . exon 19466 19485 . - . ID=Phyra85320.3;Parent=Phyra85320;constitutive=1;ensembl_phase=1;rank=3 scaffold_163 . CDS 19596 20289 . - 0 ID=Phyra85320;Parent=Phyra85320;rank=2 scaffold_163 . exon 19596 20289 . - . ID=Phyra85320.2;Parent=Phyra85320;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_163 . CDS 20378 21109 . - 0 ID=Phyra85320;Parent=Phyra85320;rank=1 scaffold_163 . exon 20378 21109 . - . ID=Phyra85320.1;Parent=Phyra85320;constitutive=1;rank=1 scaffold_163 ensembl protein_coding_gene 21510 22845 . - . ID=Phyra85321;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_163000008;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 21510 22845 . - . ID=Phyra85321;Parent=Phyra85321;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 21510 21830 . - 0 ID=Phyra85321;Parent=Phyra85321;rank=2 scaffold_163 . exon 21510 21830 . - . ID=Phyra85321.2;Parent=Phyra85321;constitutive=1;rank=2 scaffold_163 . CDS 21910 22845 . - 0 ID=Phyra85321;Parent=Phyra85321;rank=1 scaffold_163 . exon 21910 22845 . - . ID=Phyra85321.1;Parent=Phyra85321;constitutive=1;rank=1 scaffold_163 ensembl protein_coding_gene 24464 26161 . - . ID=Phyra85322;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_163000009;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 24464 26161 . - . ID=Phyra85322;Parent=Phyra85322;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 24464 26161 . - 0 ID=Phyra85322;Parent=Phyra85322;rank=1 scaffold_163 . exon 24464 26161 . - . ID=Phyra85322.1;Parent=Phyra85322;constitutive=1;rank=1 scaffold_163 . repeat_region 34761 34768 . ? . description=dust scaffold_163 ensembl protein_coding_gene 27789 29480 . - . ID=Phyra85323;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_163000010;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 27789 29480 . - . ID=Phyra85323;Parent=Phyra85323;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 27789 29480 . - 0 ID=Phyra85323;Parent=Phyra85323;rank=1 scaffold_163 . exon 27789 29480 . - . ID=Phyra85323.1;Parent=Phyra85323;constitutive=1;rank=1 scaffold_163 ensembl protein_coding_gene 31042 33265 . + . ID=Phyra85324;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_163000011;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 31042 33265 . + . ID=Phyra85324;Parent=Phyra85324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 31042 31599 . + 0 ID=Phyra85324;Parent=Phyra85324;rank=1 scaffold_163 . exon 31042 31599 . + . ID=Phyra85324.1;Parent=Phyra85324;constitutive=1;rank=1 scaffold_163 . CDS 31659 31718 . + 0 ID=Phyra85324;Parent=Phyra85324;rank=2 scaffold_163 . exon 31659 31718 . + . ID=Phyra85324.2;Parent=Phyra85324;constitutive=1;rank=2 scaffold_163 . CDS 31797 31895 . + 0 ID=Phyra85324;Parent=Phyra85324;rank=3 scaffold_163 . exon 31797 31895 . + . ID=Phyra85324.3;Parent=Phyra85324;constitutive=1;rank=3 scaffold_163 . CDS 32024 33265 . + 0 ID=Phyra85324;Parent=Phyra85324;rank=4 scaffold_163 . exon 32024 33265 . + . ID=Phyra85324.4;Parent=Phyra85324;constitutive=1;rank=4 scaffold_163 ensembl protein_coding_gene 33419 33742 . - . ID=Phyra85325;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_163000012;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 33419 33742 . - . ID=Phyra85325;Parent=Phyra85325;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 33419 33742 . - 0 ID=Phyra85325;Parent=Phyra85325;rank=1 scaffold_163 . exon 33419 33742 . - . ID=Phyra85325.1;Parent=Phyra85325;constitutive=1;rank=1 scaffold_163 ensembl protein_coding_gene 33960 35837 . + . ID=Phyra85326;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_163000013;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 33960 35837 . + . ID=Phyra85326;Parent=Phyra85326;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 33960 35837 . + 0 ID=Phyra85326;Parent=Phyra85326;rank=1 scaffold_163 . exon 33960 35837 . + . ID=Phyra85326.1;Parent=Phyra85326;constitutive=1;rank=1 scaffold_163 . biological_region 37328 37331 0.999 + . logic_name=eponine scaffold_163 . repeat_region 38652 38687 . ? . description=trf scaffold_163 . biological_region 42226 42230 0.999 - . logic_name=eponine scaffold_163 . biological_region 43199 43202 0.999 + . logic_name=eponine scaffold_163 ensembl protein_coding_gene 43000 46434 . + . ID=Phyra42703;biotype=protein_coding;external_name=gwEuk.163.5.1;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 43000 46434 . + . ID=Phyra42703;Parent=Phyra42703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 43000 46434 . + 0 ID=Phyra42703;Parent=Phyra42703;rank=1 scaffold_163 . exon 43000 46434 . + . ID=Phyra42703.1;Parent=Phyra42703;constitutive=1;rank=1 scaffold_163 ensembl protein_coding_gene 36112 37815 . - . ID=Phyra85327;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_163000014;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 36112 37815 . - . ID=Phyra85327;Parent=Phyra85327;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 36112 37815 . - 0 ID=Phyra85327;Parent=Phyra85327;rank=1 scaffold_163 . exon 36112 37815 . - . ID=Phyra85327.1;Parent=Phyra85327;constitutive=1;rank=1 scaffold_163 ensembl protein_coding_gene 38077 38728 . - . ID=Phyra85328;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_163000015;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 38077 38728 . - . ID=Phyra85328;Parent=Phyra85328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 38077 38247 . - 0 ID=Phyra85328;Parent=Phyra85328;rank=3 scaffold_163 . exon 38077 38247 . - . ID=Phyra85328.3;Parent=Phyra85328;constitutive=1;rank=3 scaffold_163 . CDS 38307 38651 . - 0 ID=Phyra85328;Parent=Phyra85328;rank=2 scaffold_163 . exon 38307 38651 . - . ID=Phyra85328.2;Parent=Phyra85328;constitutive=1;rank=2 scaffold_163 . CDS 38714 38728 . - 0 ID=Phyra85328;Parent=Phyra85328;rank=1 scaffold_163 . exon 38714 38728 . - . ID=Phyra85328.1;Parent=Phyra85328;constitutive=1;rank=1 scaffold_163 . repeat_region 51087 51109 . ? . description=dust scaffold_163 ensembl protein_coding_gene 46649 50059 . + . ID=Phyra85331;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_163000018;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 46649 50059 . + . ID=Phyra85331;Parent=Phyra85331;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 46649 50059 . + 0 ID=Phyra85331;Parent=Phyra85331;rank=1 scaffold_163 . exon 46649 50059 . + . ID=Phyra85331.1;Parent=Phyra85331;constitutive=1;rank=1 scaffold_163 ensembl protein_coding_gene 51184 52834 . - . ID=Phyra85333;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_163000020;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 51184 52834 . - . ID=Phyra85333;Parent=Phyra85333;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 51184 51401 . - 0 ID=Phyra85333;Parent=Phyra85333;rank=4 scaffold_163 . exon 51184 51401 . - . ID=Phyra85333.4;Parent=Phyra85333;constitutive=1;ensembl_phase=1;rank=4 scaffold_163 . CDS 51477 51754 . - 0 ID=Phyra85333;Parent=Phyra85333;rank=3 scaffold_163 . exon 51477 51754 . - . ID=Phyra85333.3;Parent=Phyra85333;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_163 . CDS 51836 52019 . - 0 ID=Phyra85333;Parent=Phyra85333;rank=2 scaffold_163 . exon 51836 52019 . - . ID=Phyra85333.2;Parent=Phyra85333;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_163 . CDS 52091 52832 . - 0 ID=Phyra85333;Parent=Phyra85333;rank=1 scaffold_163 . exon 52091 52834 . - . ID=Phyra85333.1;Parent=Phyra85333;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_163 ensembl protein_coding_gene 50126 51018 . - . ID=Phyra97104;biotype=protein_coding;external_name=C_scaffold_163000010;logic_name=jgi_phyra1 scaffold_163 ensembl transcript 50126 51018 . - . ID=Phyra97104;Parent=Phyra97104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_163 . CDS 50126 50638 . - 0 ID=Phyra97104;Parent=Phyra97104;rank=3 scaffold_163 . exon 50126 50638 . - . ID=Phyra97104.3;Parent=Phyra97104;constitutive=1;rank=3 scaffold_163 . CDS 50699 50809 . - 0 ID=Phyra97104;Parent=Phyra97104;rank=2 scaffold_163 . exon 50699 50809 . - . ID=Phyra97104.2;Parent=Phyra97104;constitutive=1;rank=2 scaffold_163 . CDS 50875 51018 . - 0 ID=Phyra97104;Parent=Phyra97104;rank=1 scaffold_163 . exon 50875 51018 . - . ID=Phyra97104.1;Parent=Phyra97104;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_162 1 53085 scaffold_162 . repeat_region 3002 3016 . ? . description=dust scaffold_162 . repeat_region 4113 4120 . ? . description=dust scaffold_162 . repeat_region 4190 4197 . ? . description=dust scaffold_162 ensembl protein_coding_gene 4562 5228 . + . ID=Phyra85309;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_162000001;logic_name=jgi_phyra1 scaffold_162 ensembl transcript 4562 5228 . + . ID=Phyra85309;Parent=Phyra85309;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_162 . CDS 4562 5155 . + 0 ID=Phyra85309;Parent=Phyra85309;rank=1 scaffold_162 . exon 4562 5155 . + . ID=Phyra85309.1;Parent=Phyra85309;constitutive=1;rank=1 scaffold_162 . CDS 5193 5228 . + 0 ID=Phyra85309;Parent=Phyra85309;rank=2 scaffold_162 . exon 5193 5228 . + . ID=Phyra85309.2;Parent=Phyra85309;constitutive=1;rank=2 scaffold_162 . repeat_region 11427 11655 . + . description=GypsyPi-1c_LTR scaffold_162 . biological_region 15520 15521 0.999 + . logic_name=eponine scaffold_162 . repeat_region 16549 16598 . ? . description=trf scaffold_162 . repeat_region 17822 36749 . ? . description=dust scaffold_162 . repeat_region 17822 36749 . ? . description=dust scaffold_162 . repeat_region 37628 37677 . ? . description=dust scaffold_162 . biological_region 40498 40498 0.999 - . logic_name=eponine scaffold_162 . repeat_region 41571 41590 . ? . description=trf scaffold_162 . repeat_region 41881 41890 . ? . description=dust scaffold_162 . repeat_region 42265 42310 . ? . description=trf scaffold_162 . repeat_region 43996 44044 . ? . description=trf scaffold_162 ensembl protein_coding_gene 37709 39916 . + . ID=Phyra85310;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_162000002;logic_name=jgi_phyra1 scaffold_162 ensembl transcript 37709 39916 . + . ID=Phyra85310;Parent=Phyra85310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_162 . CDS 37709 39916 . + 0 ID=Phyra85310;Parent=Phyra85310;rank=1 scaffold_162 . exon 37709 39916 . + . ID=Phyra85310.1;Parent=Phyra85310;constitutive=1;rank=1 scaffold_162 ensembl protein_coding_gene 40142 41401 . - . ID=Phyra85311;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_162000003;logic_name=jgi_phyra1 scaffold_162 ensembl transcript 40142 41401 . - . ID=Phyra85311;Parent=Phyra85311;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_162 . CDS 40142 41401 . - 0 ID=Phyra85311;Parent=Phyra85311;rank=1 scaffold_162 . exon 40142 41401 . - . ID=Phyra85311.1;Parent=Phyra85311;constitutive=1;rank=1 scaffold_162 ensembl protein_coding_gene 44301 44738 . + . ID=Phyra85312;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_162000004;logic_name=jgi_phyra1 scaffold_162 ensembl transcript 44301 44738 . + . ID=Phyra85312;Parent=Phyra85312;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_162 . CDS 44301 44738 . + 0 ID=Phyra85312;Parent=Phyra85312;rank=1 scaffold_162 . exon 44301 44738 . + . ID=Phyra85312.1;Parent=Phyra85312;constitutive=1;rank=1 scaffold_162 ensembl protein_coding_gene 48557 51255 . + . ID=Phyra85313;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_162000005;logic_name=jgi_phyra1 scaffold_162 ensembl transcript 48557 51255 . + . ID=Phyra85313;Parent=Phyra85313;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_162 . CDS 48557 49001 . + 0 ID=Phyra85313;Parent=Phyra85313;rank=1 scaffold_162 . exon 48557 49001 . + . ID=Phyra85313.1;Parent=Phyra85313;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_162 . CDS 49120 51188 . + 0 ID=Phyra85313;Parent=Phyra85313;rank=2 scaffold_162 . exon 49120 51188 . + . ID=Phyra85313.2;Parent=Phyra85313;constitutive=1;ensembl_phase=1;rank=2 scaffold_162 . CDS 51247 51255 . + 0 ID=Phyra85313;Parent=Phyra85313;rank=3 scaffold_162 . exon 51247 51255 . + . ID=Phyra85313.3;Parent=Phyra85313;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_161 1 54132 scaffold_161 . repeat_region 1277 1789 . ? . description=dust scaffold_161 . repeat_region 4752 7693 . ? . description=dust scaffold_161 ensembl protein_coding_gene 427 1218 . - . ID=Phyra72327;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_161000001;logic_name=jgi_phyra1 scaffold_161 ensembl transcript 427 1218 . - . ID=Phyra72327;Parent=Phyra72327;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_161 . CDS 427 454 . - 0 ID=Phyra72327;Parent=Phyra72327;rank=3 scaffold_161 . exon 427 454 . - . ID=Phyra72327.3;Parent=Phyra72327;constitutive=1;ensembl_phase=2;rank=3 scaffold_161 . CDS 474 1102 . - 0 ID=Phyra72327;Parent=Phyra72327;rank=2 scaffold_161 . exon 474 1102 . - . ID=Phyra72327.2;Parent=Phyra72327;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_161 . CDS 1150 1218 . - 0 ID=Phyra72327;Parent=Phyra72327;rank=1 scaffold_161 . exon 1150 1218 . - . ID=Phyra72327.1;Parent=Phyra72327;constitutive=1;rank=1 scaffold_161 ensembl protein_coding_gene 1853 4588 . - . ID=Phyra85299;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_161000002;logic_name=jgi_phyra1 scaffold_161 ensembl transcript 1853 4588 . - . ID=Phyra85299;Parent=Phyra85299;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_161 . CDS 1853 4588 . - 0 ID=Phyra85299;Parent=Phyra85299;rank=1 scaffold_161 . exon 1853 4588 . - . ID=Phyra85299.1;Parent=Phyra85299;constitutive=1;rank=1 scaffold_161 ensembl protein_coding_gene 7772 8850 . - . ID=Phyra85300;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_161000003;logic_name=jgi_phyra1 scaffold_161 ensembl transcript 7772 8850 . - . ID=Phyra85300;Parent=Phyra85300;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_161 . CDS 7772 7782 . - 0 ID=Phyra85300;Parent=Phyra85300;rank=2 scaffold_161 . exon 7772 7782 . - . ID=Phyra85300.2;Parent=Phyra85300;constitutive=1;ensembl_phase=1;rank=2 scaffold_161 . CDS 7815 8850 . - 0 ID=Phyra85300;Parent=Phyra85300;rank=1 scaffold_161 . exon 7815 8850 . - . ID=Phyra85300.1;Parent=Phyra85300;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_161 . biological_region 12402 12408 0.999 + . logic_name=eponine scaffold_161 . biological_region 14957 14959 0.999 + . logic_name=eponine scaffold_161 ensembl protein_coding_gene 9902 13576 . - . ID=Phyra42619;biotype=protein_coding;external_name=gwEuk.161.13.1;logic_name=jgi_phyra1 scaffold_161 ensembl transcript 9902 13576 . - . ID=Phyra42619;Parent=Phyra42619;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_161 . CDS 9902 13576 . - 0 ID=Phyra42619;Parent=Phyra42619;rank=1 scaffold_161 . exon 9902 13576 . - . ID=Phyra42619.1;Parent=Phyra42619;constitutive=1;rank=1 scaffold_161 ensembl protein_coding_gene 14942 17026 . + . ID=Phyra85303;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_161000006;logic_name=jgi_phyra1 scaffold_161 ensembl transcript 14942 17026 . + . ID=Phyra85303;Parent=Phyra85303;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_161 . CDS 14942 17026 . + 0 ID=Phyra85303;Parent=Phyra85303;rank=1 scaffold_161 . exon 14942 17026 . + . ID=Phyra85303.1;Parent=Phyra85303;constitutive=1;rank=1 scaffold_161 ensembl protein_coding_gene 17220 18441 . + . ID=Phyra85304;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_161000007;logic_name=jgi_phyra1 scaffold_161 ensembl transcript 17220 18441 . + . ID=Phyra85304;Parent=Phyra85304;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_161 . CDS 17220 18401 . + 0 ID=Phyra85304;Parent=Phyra85304;rank=1 scaffold_161 . exon 17220 18401 . + . ID=Phyra85304.1;Parent=Phyra85304;constitutive=1;rank=1 scaffold_161 . CDS 18424 18441 . + 0 ID=Phyra85304;Parent=Phyra85304;rank=2 scaffold_161 . repeat_region 18656 34555 . ? . description=dust scaffold_161 . exon 18424 18441 . + . ID=Phyra85304.2;Parent=Phyra85304;constitutive=1;rank=2 scaffold_161 . biological_region 39588 39589 0.999 + . logic_name=eponine scaffold_161 . biological_region 40231 40233 0.999 + . logic_name=eponine scaffold_161 . biological_region 40254 40258 0.999 + . logic_name=eponine scaffold_161 . repeat_region 40701 40708 . ? . description=dust scaffold_161 . repeat_region 42439 42463 . ? . description=trf scaffold_161 . repeat_region 42441 42465 . ? . description=trf scaffold_161 . biological_region 43016 43017 0.999 + . logic_name=eponine scaffold_161 . repeat_region 43131 43138 . ? . description=dust scaffold_161 ensembl protein_coding_gene 39466 40554 . - . ID=Phyra42624;biotype=protein_coding;external_name=gwEuk.161.18.1;logic_name=jgi_phyra1 scaffold_161 ensembl transcript 39466 40554 . - . ID=Phyra42624;Parent=Phyra42624;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_161 . CDS 39466 39960 . - 0 ID=Phyra42624;Parent=Phyra42624;rank=2 scaffold_161 . exon 39466 39960 . - . ID=Phyra42624.2;Parent=Phyra42624;constitutive=1;rank=2 scaffold_161 . CDS 40030 40554 . - 0 ID=Phyra42624;Parent=Phyra42624;rank=1 scaffold_161 . exon 40030 40554 . - . ID=Phyra42624.1;Parent=Phyra42624;constitutive=1;rank=1 scaffold_161 ensembl protein_coding_gene 41017 43114 . - . ID=Phyra85306;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_161000009;logic_name=jgi_phyra1 scaffold_161 ensembl transcript 41017 43114 . - . ID=Phyra85306;Parent=Phyra85306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_161 . CDS 41017 41808 . - 0 ID=Phyra85306;Parent=Phyra85306;rank=4 scaffold_161 . exon 41017 41808 . - . ID=Phyra85306.4;Parent=Phyra85306;constitutive=1;rank=4 scaffold_161 . CDS 41888 42091 . - 0 ID=Phyra85306;Parent=Phyra85306;rank=3 scaffold_161 . exon 41888 42091 . - . ID=Phyra85306.3;Parent=Phyra85306;constitutive=1;rank=3 scaffold_161 . CDS 42125 42632 . - 0 ID=Phyra85306;Parent=Phyra85306;rank=2 scaffold_161 . exon 42125 42632 . - . ID=Phyra85306.2;Parent=Phyra85306;constitutive=1;ensembl_phase=2;rank=2 scaffold_161 . CDS 43005 43114 . - 0 ID=Phyra85306;Parent=Phyra85306;rank=1 scaffold_161 . exon 43005 43114 . - . ID=Phyra85306.1;Parent=Phyra85306;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_161 . repeat_region 49138 53239 . + . description=Gypsy-2-I_PI-int scaffold_161 . repeat_region 53244 54120 . + . description=Gypsy-2-I_PI-int scaffold_161 ensembl protein_coding_gene 45884 47338 . + . ID=Phyra85307;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_161000010;logic_name=jgi_phyra1 scaffold_161 ensembl transcript 45884 47338 . + . ID=Phyra85307;Parent=Phyra85307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_161 . CDS 45884 47338 . + 0 ID=Phyra85307;Parent=Phyra85307;rank=1 scaffold_161 . exon 45884 47338 . + . ID=Phyra85307.1;Parent=Phyra85307;constitutive=1;rank=1 scaffold_161 ensembl protein_coding_gene 49177 51502 . + . ID=Phyra85308;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_161000011;logic_name=jgi_phyra1 scaffold_161 ensembl transcript 49177 51502 . + . ID=Phyra85308;Parent=Phyra85308;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_161 . CDS 49177 49749 . + 0 ID=Phyra85308;Parent=Phyra85308;rank=1 scaffold_161 . exon 49177 49749 . + . ID=Phyra85308.1;Parent=Phyra85308;constitutive=1;rank=1 scaffold_161 . CDS 49801 49984 . + 0 ID=Phyra85308;Parent=Phyra85308;rank=2 scaffold_161 . exon 49801 49984 . + . ID=Phyra85308.2;Parent=Phyra85308;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_161 . CDS 50116 51078 . + 0 ID=Phyra85308;Parent=Phyra85308;rank=3 scaffold_161 . exon 50116 51078 . + . ID=Phyra85308.3;Parent=Phyra85308;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_161 . CDS 51194 51231 . + 0 ID=Phyra85308;Parent=Phyra85308;rank=4 scaffold_161 . exon 51194 51231 . + . ID=Phyra85308.4;Parent=Phyra85308;constitutive=1;ensembl_phase=1;rank=4 scaffold_161 . CDS 51302 51502 . + 0 ID=Phyra85308;Parent=Phyra85308;rank=5 scaffold_161 . exon 51302 51502 . + . ID=Phyra85308.5;Parent=Phyra85308;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_160 1 54416 scaffold_160 . repeat_region 601 608 . ? . description=dust scaffold_160 . repeat_region 1493 1505 . ? . description=dust scaffold_160 . repeat_region 1508 1557 . ? . description=dust scaffold_160 . repeat_region 1803 1824 . ? . description=trf scaffold_160 . repeat_region 2490 2510 . ? . description=dust scaffold_160 . repeat_region 3173 4400 . ? . description=dust scaffold_160 . repeat_region 5325 5371 . ? . description=trf scaffold_160 . biological_region 6516 6519 0.999 + . logic_name=eponine scaffold_160 . repeat_region 6880 6888 . ? . description=dust scaffold_160 . repeat_region 8316 8337 . ? . description=trf scaffold_160 ensembl pseudogene 2153 2401 . + . ID=Phyra42566;biotype=pseudogene;external_name=gwEuk.160.4.1;logic_name=jgi_phyra1 scaffold_160 ensembl pseudogene 2153 2401 . + . ID=Phyra42566;Parent=Phyra42566;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_160 . exon 2153 2401 . + . ID=Phyra42566.1;Parent=Phyra42566;constitutive=1;rank=1 scaffold_160 ensembl protein_coding_gene 5276 8781 . - . ID=Phyra85284;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_160000001;logic_name=jgi_phyra1 scaffold_160 ensembl transcript 5276 8781 . - . ID=Phyra85284;Parent=Phyra85284;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_160 . CDS 5276 5473 . - 0 ID=Phyra85284;Parent=Phyra85284;rank=8 scaffold_160 . exon 5276 5473 . - . ID=Phyra85284.8;Parent=Phyra85284;constitutive=1;rank=8 scaffold_160 . CDS 5976 6295 . - 0 ID=Phyra85284;Parent=Phyra85284;rank=7 scaffold_160 . exon 5976 6295 . - . ID=Phyra85284.7;Parent=Phyra85284;constitutive=1;ensembl_phase=1;rank=7 scaffold_160 . CDS 6357 6612 . - 0 ID=Phyra85284;Parent=Phyra85284;rank=6 scaffold_160 . exon 6357 6612 . - . ID=Phyra85284.6;Parent=Phyra85284;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_160 . CDS 6932 6937 . - 0 ID=Phyra85284;Parent=Phyra85284;rank=5 scaffold_160 . exon 6932 6937 . - . ID=Phyra85284.5;Parent=Phyra85284;constitutive=1;rank=5 scaffold_160 . CDS 6973 7631 . - 0 ID=Phyra85284;Parent=Phyra85284;rank=4 scaffold_160 . exon 6973 7631 . - . ID=Phyra85284.4;Parent=Phyra85284;constitutive=1;ensembl_phase=1;rank=4 scaffold_160 . CDS 7734 7985 . - 0 ID=Phyra85284;Parent=Phyra85284;rank=3 scaffold_160 . exon 7734 7985 . - . ID=Phyra85284.3;Parent=Phyra85284;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_160 . CDS 8040 8058 . - 0 ID=Phyra85284;Parent=Phyra85284;rank=2 scaffold_160 . exon 8040 8058 . - . ID=Phyra85284.2;Parent=Phyra85284;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_160 . CDS 8146 8781 . - 0 ID=Phyra85284;Parent=Phyra85284;rank=1 scaffold_160 . exon 8146 8781 . - . ID=Phyra85284.1;Parent=Phyra85284;constitutive=1;rank=1 scaffold_160 . repeat_region 16083 21320 . ? . description=dust scaffold_160 . repeat_region 22349 22357 . ? . description=dust scaffold_160 . repeat_region 22747 22755 . ? . description=dust scaffold_160 . biological_region 23364 23365 0.999 + . logic_name=eponine scaffold_160 ensembl protein_coding_gene 23957 25276 . + . ID=Phyra72323;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_160000001;logic_name=jgi_phyra1 scaffold_160 ensembl transcript 23957 25276 . + . ID=Phyra72323;Parent=Phyra72323;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_160 . CDS 23957 25276 . + 0 ID=Phyra72323;Parent=Phyra72323;rank=1 scaffold_160 . exon 23957 25276 . + . ID=Phyra72323.1;Parent=Phyra72323;constitutive=1;rank=1 scaffold_160 ensembl protein_coding_gene 25528 27639 . - . ID=Phyra72324;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_160000002;logic_name=jgi_phyra1 scaffold_160 ensembl transcript 25528 27639 . - . ID=Phyra72324;Parent=Phyra72324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_160 . CDS 25528 27639 . - 0 ID=Phyra72324;Parent=Phyra72324;rank=1 scaffold_160 . exon 25528 27639 . - . ID=Phyra72324.1;Parent=Phyra72324;constitutive=1;rank=1 scaffold_160 . repeat_region 29827 29880 . ? . description=trf scaffold_160 . repeat_region 32984 33033 . ? . description=trf scaffold_160 ensembl protein_coding_gene 30446 30709 . - . ID=Phyra42580;biotype=protein_coding;external_name=gwEuk.160.18.1;logic_name=jgi_phyra1 scaffold_160 ensembl transcript 30446 30709 . - . ID=Phyra42580;Parent=Phyra42580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_160 . CDS 30446 30709 . - 0 ID=Phyra42580;Parent=Phyra42580;rank=1 scaffold_160 . exon 30446 30709 . - . ID=Phyra42580.1;Parent=Phyra42580;constitutive=1;rank=1 scaffold_160 ensembl protein_coding_gene 27898 28653 . + . ID=Phyra85287;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_160000004;logic_name=jgi_phyra1 scaffold_160 ensembl transcript 27898 28653 . + . ID=Phyra85287;Parent=Phyra85287;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_160 . CDS 27898 28653 . + 0 ID=Phyra85287;Parent=Phyra85287;rank=1 scaffold_160 . exon 27898 28653 . + . ID=Phyra85287.1;Parent=Phyra85287;constitutive=1;rank=1 scaffold_160 ensembl protein_coding_gene 28747 29474 . + . ID=Phyra85288;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_160000005;logic_name=jgi_phyra1 scaffold_160 ensembl transcript 28747 29474 . + . ID=Phyra85288;Parent=Phyra85288;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_160 . CDS 28747 29114 . + 0 ID=Phyra85288;Parent=Phyra85288;rank=1 scaffold_160 . exon 28747 29114 . + . ID=Phyra85288.1;Parent=Phyra85288;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_160 . CDS 29185 29293 . + 0 ID=Phyra85288;Parent=Phyra85288;rank=2 scaffold_160 . exon 29185 29293 . + . ID=Phyra85288.2;Parent=Phyra85288;constitutive=1;ensembl_phase=2;rank=2 scaffold_160 . CDS 29370 29474 . + 0 ID=Phyra85288;Parent=Phyra85288;rank=3 scaffold_160 . exon 29370 29474 . + . ID=Phyra85288.3;Parent=Phyra85288;constitutive=1;rank=3 scaffold_160 ensembl protein_coding_gene 30938 31932 . + . ID=Phyra85290;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_160000007;logic_name=jgi_phyra1 scaffold_160 ensembl transcript 30938 31932 . + . ID=Phyra85290;Parent=Phyra85290;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_160 . CDS 30938 31840 . + 0 ID=Phyra85290;Parent=Phyra85290;rank=1 scaffold_160 . exon 30938 31840 . + . ID=Phyra85290.1;Parent=Phyra85290;constitutive=1;rank=1 scaffold_160 . CDS 31861 31932 . + 0 ID=Phyra85290;Parent=Phyra85290;rank=2 scaffold_160 . exon 31861 31932 . + . ID=Phyra85290.2;Parent=Phyra85290;constitutive=1;rank=2 scaffold_160 ensembl protein_coding_gene 32235 32923 . - . ID=Phyra85291;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_160000008;logic_name=jgi_phyra1 scaffold_160 ensembl transcript 32235 32923 . - . ID=Phyra85291;Parent=Phyra85291;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_160 . CDS 32235 32504 . - 0 ID=Phyra85291;Parent=Phyra85291;rank=3 scaffold_160 . exon 32235 32504 . - . ID=Phyra85291.3;Parent=Phyra85291;constitutive=1;rank=3 scaffold_160 . CDS 32586 32677 . - 0 ID=Phyra85291;Parent=Phyra85291;rank=2 scaffold_160 . exon 32586 32677 . - . ID=Phyra85291.2;Parent=Phyra85291;constitutive=1;ensembl_phase=1;rank=2 scaffold_160 . CDS 32773 32923 . - 0 ID=Phyra85291;Parent=Phyra85291;rank=1 scaffold_160 . exon 32773 32923 . - . ID=Phyra85291.1;Parent=Phyra85291;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_160 ensembl protein_coding_gene 33148 33966 . - . ID=Phyra85292;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_160000009;logic_name=jgi_phyra1 scaffold_160 ensembl transcript 33148 33966 . - . ID=Phyra85292;Parent=Phyra85292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_160 . CDS 33148 33966 . - 0 ID=Phyra85292;Parent=Phyra85292;rank=1 scaffold_160 . exon 33148 33966 . - . ID=Phyra85292.1;Parent=Phyra85292;constitutive=1;rank=1 scaffold_160 ensembl protein_coding_gene 34274 34864 . - . ID=Phyra85293;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_160000010;logic_name=jgi_phyra1 scaffold_160 ensembl transcript 34274 34864 . - . ID=Phyra85293;Parent=Phyra85293;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_160 . CDS 34274 34864 . - 0 ID=Phyra85293;Parent=Phyra85293;rank=1 scaffold_160 . exon 34274 34864 . - . ID=Phyra85293.1;Parent=Phyra85293;constitutive=1;rank=1 scaffold_160 . repeat_region 39964 39974 . ? . description=dust scaffold_160 ensembl pseudogene 44230 46502 . + . ID=Phyra42585;biotype=pseudogene;external_name=gwEuk.160.23.1;logic_name=jgi_phyra1 scaffold_160 ensembl pseudogene 44230 46502 . + . ID=Phyra42585;Parent=Phyra42585;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_160 . exon 44230 44332 . + . ID=Phyra42585.1;Parent=Phyra42585;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_160 . exon 44416 44459 . + . ID=Phyra42585.2;Parent=Phyra42585;constitutive=1;ensembl_phase=1;rank=2 scaffold_160 . exon 44533 44607 . + . ID=Phyra42585.3;Parent=Phyra42585;constitutive=1;rank=3 scaffold_160 . exon 44681 44881 . + . ID=Phyra42585.4;Parent=Phyra42585;constitutive=1;rank=4 scaffold_160 . exon 44954 45240 . + . ID=Phyra42585.5;Parent=Phyra42585;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_160 . exon 45334 45867 . + . ID=Phyra42585.6;Parent=Phyra42585;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_160 ensembl protein_coding_gene 41064 42731 . + . ID=Phyra85295;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_160000012;logic_name=jgi_phyra1 scaffold_160 ensembl transcript 41064 42731 . + . ID=Phyra85295;Parent=Phyra85295;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_160 . CDS 41064 42731 . + 0 ID=Phyra85295;Parent=Phyra85295;rank=1 scaffold_160 . exon 41064 42731 . + . ID=Phyra85295.1;Parent=Phyra85295;constitutive=1;rank=1 scaffold_160 ensembl protein_coding_gene 36463 40117 . - . ID=Phyra97093;biotype=protein_coding;external_name=C_scaffold_160000005;logic_name=jgi_phyra1 scaffold_160 ensembl transcript 36463 40117 . - . ID=Phyra97093;Parent=Phyra97093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_160 . CDS 36463 36489 . - 0 ID=Phyra97093;Parent=Phyra97093;rank=7 scaffold_160 . exon 36463 36489 . - . ID=Phyra97093.7;Parent=Phyra97093;constitutive=1;rank=7 scaffold_160 . CDS 36554 37047 . - 0 ID=Phyra97093;Parent=Phyra97093;rank=6 scaffold_160 . exon 36554 37047 . - . ID=Phyra97093.6;Parent=Phyra97093;constitutive=1;ensembl_phase=1;rank=6 scaffold_160 . CDS 37375 37434 . - 0 ID=Phyra97093;Parent=Phyra97093;rank=5 scaffold_160 . exon 37375 37434 . - . ID=Phyra97093.5;Parent=Phyra97093;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_160 . CDS 37462 38022 . - 0 ID=Phyra97093;Parent=Phyra97093;rank=4 scaffold_160 . exon 37462 38022 . - . ID=Phyra97093.4;Parent=Phyra97093;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_160 . CDS 38050 38137 . - 0 ID=Phyra97093;Parent=Phyra97093;rank=3 scaffold_160 . exon 38050 38137 . - . ID=Phyra97093.3;Parent=Phyra97093;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_160 . CDS 38609 39913 . - 0 ID=Phyra97093;Parent=Phyra97093;rank=2 scaffold_160 . exon 38609 39913 . - . ID=Phyra97093.2;Parent=Phyra97093;constitutive=1;rank=2 scaffold_160 . CDS 39989 40117 . - 0 ID=Phyra97093;Parent=Phyra97093;rank=1 scaffold_160 . exon 39989 40117 . - . ID=Phyra97093.1;Parent=Phyra97093;constitutive=1;rank=1 scaffold_160 . biological_region 53686 53687 0.999 + . logic_name=eponine scaffold_160 . biological_region 53695 53696 0.999 - . logic_name=eponine scaffold_160 . exon 45939 46502 . + . ID=Phyra42585.7;Parent=Phyra42585;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_160 ensembl protein_coding_gene 46657 47705 . + . ID=Phyra42590;biotype=protein_coding;external_name=gwEuk.160.28.1;logic_name=jgi_phyra1 scaffold_160 ensembl transcript 46657 47705 . + . ID=Phyra42590;Parent=Phyra42590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_160 . CDS 46657 46728 . + 0 ID=Phyra42590;Parent=Phyra42590;rank=1 scaffold_160 . exon 46657 46728 . + . ID=Phyra42590.1;Parent=Phyra42590;constitutive=1;rank=1 scaffold_160 . CDS 46798 46843 . + 0 ID=Phyra42590;Parent=Phyra42590;rank=2 scaffold_160 . exon 46798 46843 . + . ID=Phyra42590.2;Parent=Phyra42590;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_160 . CDS 46918 47054 . + 0 ID=Phyra42590;Parent=Phyra42590;rank=3 scaffold_160 . exon 46918 47054 . + . ID=Phyra42590.3;Parent=Phyra42590;constitutive=1;ensembl_phase=1;rank=3 scaffold_160 . CDS 47116 47224 . + 0 ID=Phyra42590;Parent=Phyra42590;rank=4 scaffold_160 . exon 47116 47224 . + . ID=Phyra42590.4;Parent=Phyra42590;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_160 . CDS 47303 47369 . + 0 ID=Phyra42590;Parent=Phyra42590;rank=5 scaffold_160 . exon 47303 47369 . + . ID=Phyra42590.5;Parent=Phyra42590;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_160 . CDS 47442 47519 . + 0 ID=Phyra42590;Parent=Phyra42590;rank=6 scaffold_160 . exon 47442 47519 . + . ID=Phyra42590.6;Parent=Phyra42590;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_160 . CDS 47597 47705 . + 0 ID=Phyra42590;Parent=Phyra42590;rank=7 scaffold_160 . exon 47597 47705 . + . ID=Phyra42590.7;Parent=Phyra42590;constitutive=1;ensembl_phase=2;rank=7 scaffold_160 ensembl protein_coding_gene 48712 50247 . - . ID=Phyra72326;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_160000004;logic_name=jgi_phyra1 scaffold_160 ensembl transcript 48712 50247 . - . ID=Phyra72326;Parent=Phyra72326;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_160 . CDS 48712 50247 . - 0 ID=Phyra72326;Parent=Phyra72326;rank=1 scaffold_160 . exon 48712 50247 . - . ID=Phyra72326.1;Parent=Phyra72326;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_159 1 54555 scaffold_159 . repeat_region 1309 32980 . ? . description=dust scaffold_159 . repeat_region 1309 32980 . ? . description=dust scaffold_159 . biological_region 34724 34725 0.999 + . logic_name=eponine scaffold_159 ensembl protein_coding_gene 34937 36687 . + . ID=Phyra85280;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_159000001;logic_name=jgi_phyra1 scaffold_159 ensembl transcript 34937 36687 . + . ID=Phyra85280;Parent=Phyra85280;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_159 . CDS 34937 35006 . + 0 ID=Phyra85280;Parent=Phyra85280;rank=1 scaffold_159 . exon 34937 35006 . + . ID=Phyra85280.1;Parent=Phyra85280;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_159 . CDS 35226 35864 . + 0 ID=Phyra85280;Parent=Phyra85280;rank=2 scaffold_159 . exon 35226 35864 . + . ID=Phyra85280.2;Parent=Phyra85280;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_159 . CDS 36395 36687 . + 0 ID=Phyra85280;Parent=Phyra85280;rank=3 scaffold_159 . repeat_region 38885 38893 . ? . description=dust scaffold_159 . repeat_region 39267 39279 . ? . description=dust scaffold_159 . repeat_region 39597 39808 . ? . description=dust scaffold_159 . exon 36395 36687 . + . ID=Phyra85280.3;Parent=Phyra85280;constitutive=1;ensembl_phase=1;rank=3 scaffold_159 ensembl protein_coding_gene 37256 37835 . + . ID=Phyra85281;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_159000002;logic_name=jgi_phyra1 scaffold_159 ensembl transcript 37256 37835 . + . ID=Phyra85281;Parent=Phyra85281;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_159 . CDS 37256 37342 . + 0 ID=Phyra85281;Parent=Phyra85281;rank=1 scaffold_159 . exon 37256 37342 . + . ID=Phyra85281.1;Parent=Phyra85281;constitutive=1;rank=1 scaffold_159 . CDS 37422 37835 . + 0 ID=Phyra85281;Parent=Phyra85281;rank=2 scaffold_159 . exon 37422 37835 . + . ID=Phyra85281.2;Parent=Phyra85281;constitutive=1;rank=2 scaffold_159 ensembl protein_coding_gene 42342 44516 . + . ID=Phyra85282;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_159000003;logic_name=jgi_phyra1 scaffold_159 ensembl transcript 42342 44516 . + . ID=Phyra85282;Parent=Phyra85282;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_159 . CDS 42342 44516 . + 0 ID=Phyra85282;Parent=Phyra85282;rank=1 scaffold_159 . exon 42342 44516 . + . ID=Phyra85282.1;Parent=Phyra85282;constitutive=1;rank=1 scaffold_159 . biological_region 45704 45704 0.999 - . logic_name=eponine scaffold_159 ensembl protein_coding_gene 46731 49085 . + . ID=Phyra85283;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_159000004;logic_name=jgi_phyra1 scaffold_159 ensembl transcript 46731 49085 . + . ID=Phyra85283;Parent=Phyra85283;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_159 . CDS 46731 49085 . + 0 ID=Phyra85283;Parent=Phyra85283;rank=1 scaffold_159 . exon 46731 49085 . + . ID=Phyra85283.1;Parent=Phyra85283;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_157 1 56480 scaffold_157 . repeat_region 1 1222 . ? . description=trf scaffold_157 . repeat_region 35 64 . ? . description=trf scaffold_157 . repeat_region 116 148 . ? . description=trf scaffold_157 . repeat_region 252 283 . ? . description=trf scaffold_157 . repeat_region 252 289 . ? . description=trf scaffold_157 . repeat_region 332 361 . ? . description=trf scaffold_157 . repeat_region 413 445 . ? . description=trf scaffold_157 . repeat_region 549 580 . ? . description=trf scaffold_157 . repeat_region 549 586 . ? . description=trf scaffold_157 . repeat_region 629 658 . ? . description=trf scaffold_157 . repeat_region 710 742 . ? . description=trf scaffold_157 . repeat_region 846 877 . ? . description=trf scaffold_157 . repeat_region 846 883 . ? . description=trf scaffold_157 . repeat_region 926 955 . ? . description=trf scaffold_157 . repeat_region 1007 1039 . ? . description=trf scaffold_157 . repeat_region 1143 1174 . ? . description=trf scaffold_157 . repeat_region 1143 1180 . ? . description=trf scaffold_157 . repeat_region 1513 2248 . ? . description=trf scaffold_157 . biological_region 1610 1610 0.999 - . logic_name=eponine scaffold_157 . biological_region 1654 1654 0.999 - . logic_name=eponine scaffold_157 . biological_region 1903 1905 0.999 - . logic_name=eponine scaffold_157 . biological_region 1948 1948 0.999 - . logic_name=eponine scaffold_157 . biological_region 3251 3253 0.999 + . logic_name=eponine scaffold_157 . repeat_region 7921 7930 . ? . description=dust scaffold_157 . repeat_region 8200 8465 . ? . description=trf scaffold_157 . repeat_region 8200 8465 . ? . description=trf scaffold_157 . repeat_region 8200 8465 . ? . description=trf scaffold_157 . biological_region 9111 9115 0.999 - . logic_name=eponine scaffold_157 . biological_region 9135 9136 0.999 - . logic_name=eponine scaffold_157 ensembl pseudogene 4826 5700 . + . ID=Phyra42275;biotype=pseudogene;external_name=gwEuk.157.5.1;logic_name=jgi_phyra1 scaffold_157 ensembl pseudogene 4826 5700 . + . ID=Phyra42275;Parent=Phyra42275;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_157 . exon 4826 4950 . + . ID=Phyra42275.1;Parent=Phyra42275;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_157 . exon 5024 5446 . + . ID=Phyra42275.2;Parent=Phyra42275;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_157 . exon 5512 5700 . + . ID=Phyra42275.3;Parent=Phyra42275;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_157 ensembl protein_coding_gene 13 3829 . - . ID=Phyra85252;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_157000001;logic_name=jgi_phyra1 scaffold_157 ensembl transcript 13 3829 . - . ID=Phyra85252;Parent=Phyra85252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_157 . CDS 13 1212 . - 0 ID=Phyra85252;Parent=Phyra85252;rank=3 scaffold_157 . exon 13 1212 . - . ID=Phyra85252.3;Parent=Phyra85252;constitutive=1;rank=3 scaffold_157 . CDS 1511 2186 . - 0 ID=Phyra85252;Parent=Phyra85252;rank=2 scaffold_157 . exon 1511 2186 . - . ID=Phyra85252.2;Parent=Phyra85252;constitutive=1;ensembl_phase=2;rank=2 scaffold_157 . CDS 2277 3829 . - 0 ID=Phyra85252;Parent=Phyra85252;rank=1 scaffold_157 . exon 2277 3829 . - . ID=Phyra85252.1;Parent=Phyra85252;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_157 ensembl protein_coding_gene 15289 16903 . - . ID=Phyra72318;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_157000002;logic_name=jgi_phyra1 scaffold_157 ensembl transcript 15289 16903 . - . ID=Phyra72318;Parent=Phyra72318;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_157 . CDS 15289 15857 . - 0 ID=Phyra72318;Parent=Phyra72318;rank=7 scaffold_157 . exon 15289 15857 . - . ID=Phyra72318.7;Parent=Phyra72318;constitutive=1;ensembl_phase=1;rank=7 scaffold_157 . CDS 15926 16025 . - 0 ID=Phyra72318;Parent=Phyra72318;rank=6 scaffold_157 . exon 15926 16025 . - . ID=Phyra72318.6;Parent=Phyra72318;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_157 . CDS 16084 16243 . - 0 ID=Phyra72318;Parent=Phyra72318;rank=5 scaffold_157 . exon 16084 16243 . - . ID=Phyra72318.5;Parent=Phyra72318;constitutive=1;ensembl_phase=2;rank=5 scaffold_157 . CDS 16318 16566 . - 0 ID=Phyra72318;Parent=Phyra72318;rank=4 scaffold_157 . exon 16318 16566 . - . ID=Phyra72318.4;Parent=Phyra72318;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_157 . CDS 16590 16594 . - 0 ID=Phyra72318;Parent=Phyra72318;rank=3 scaffold_157 . exon 16590 16594 . - . ID=Phyra72318.3;Parent=Phyra72318;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_157 . CDS 16647 16715 . - 0 ID=Phyra72318;Parent=Phyra72318;rank=2 scaffold_157 . exon 16647 16715 . - . ID=Phyra72318.2;Parent=Phyra72318;constitutive=1;rank=2 scaffold_157 . CDS 16787 16903 . - 0 ID=Phyra72318;Parent=Phyra72318;rank=1 scaffold_157 . exon 16787 16903 . - . ID=Phyra72318.1;Parent=Phyra72318;constitutive=1;rank=1 scaffold_157 ensembl protein_coding_gene 12136 15141 . + . ID=Phyra85255;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_157000004;logic_name=jgi_phyra1 scaffold_157 ensembl transcript 12136 15141 . + . ID=Phyra85255;Parent=Phyra85255;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_157 . CDS 12136 15141 . + 0 ID=Phyra85255;Parent=Phyra85255;rank=1 scaffold_157 . exon 12136 15141 . + . ID=Phyra85255.1;Parent=Phyra85255;constitutive=1;rank=1 scaffold_157 ensembl protein_coding_gene 17340 18569 . - . ID=Phyra85257;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_157000006;logic_name=jgi_phyra1 scaffold_157 ensembl transcript 17340 18569 . - . ID=Phyra85257;Parent=Phyra85257;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_157 . CDS 17340 17708 . - 0 ID=Phyra85257;Parent=Phyra85257;rank=4 scaffold_157 . exon 17340 17708 . - . ID=Phyra85257.4;Parent=Phyra85257;constitutive=1;rank=4 scaffold_157 . CDS 17796 18185 . - 0 ID=Phyra85257;Parent=Phyra85257;rank=3 scaffold_157 . exon 17796 18185 . - . ID=Phyra85257.3;Parent=Phyra85257;constitutive=1;rank=3 scaffold_157 . CDS 18257 18340 . - 0 ID=Phyra85257;Parent=Phyra85257;rank=2 scaffold_157 . exon 18257 18340 . - . ID=Phyra85257.2;Parent=Phyra85257;constitutive=1;rank=2 scaffold_157 . CDS 18411 18569 . - 0 ID=Phyra85257;Parent=Phyra85257;rank=1 scaffold_157 . exon 18411 18569 . - . ID=Phyra85257.1;Parent=Phyra85257;constitutive=1;rank=1 scaffold_157 . biological_region 21201 21202 0.999 + . logic_name=eponine scaffold_157 . biological_region 21627 21627 0.999 + . logic_name=eponine scaffold_157 . biological_region 22445 22449 0.999 + . logic_name=eponine scaffold_157 . biological_region 22536 22539 0.999 - . logic_name=eponine scaffold_157 . biological_region 22898 22903 0.999 - . logic_name=eponine scaffold_157 . biological_region 22953 22958 0.999 + . logic_name=eponine scaffold_157 . biological_region 23149 23153 0.999 + . logic_name=eponine scaffold_157 . biological_region 23181 23183 0.999 + . logic_name=eponine scaffold_157 . biological_region 25149 25152 0.999 + . logic_name=eponine scaffold_157 . biological_region 25161 25167 0.999 - . logic_name=eponine scaffold_157 . biological_region 27087 27090 0.999 + . logic_name=eponine scaffold_157 ensembl protein_coding_gene 18846 19472 . - . ID=Phyra85258;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_157000007;logic_name=jgi_phyra1 scaffold_157 ensembl transcript 18846 19472 . - . ID=Phyra85258;Parent=Phyra85258;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_157 . CDS 18846 19472 . - 0 ID=Phyra85258;Parent=Phyra85258;rank=1 scaffold_157 . exon 18846 19472 . - . ID=Phyra85258.1;Parent=Phyra85258;constitutive=1;rank=1 scaffold_157 ensembl protein_coding_gene 19704 26645 . + . ID=Phyra85259;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_157000008;logic_name=jgi_phyra1 scaffold_157 ensembl transcript 19704 26645 . + . ID=Phyra85259;Parent=Phyra85259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_157 . CDS 19704 20219 . + 0 ID=Phyra85259;Parent=Phyra85259;rank=1 scaffold_157 . exon 19704 20219 . + . ID=Phyra85259.1;Parent=Phyra85259;constitutive=1;rank=1 scaffold_157 . CDS 20278 21969 . + 0 ID=Phyra85259;Parent=Phyra85259;rank=2 scaffold_157 . exon 20278 21969 . + . ID=Phyra85259.2;Parent=Phyra85259;constitutive=1;rank=2 scaffold_157 . CDS 22269 25629 . + 0 ID=Phyra85259;Parent=Phyra85259;rank=3 scaffold_157 . exon 22269 25629 . + . ID=Phyra85259.3;Parent=Phyra85259;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_157 . CDS 25689 25837 . + 0 ID=Phyra85259;Parent=Phyra85259;rank=4 scaffold_157 . exon 25689 25837 . + . ID=Phyra85259.4;Parent=Phyra85259;constitutive=1;ensembl_phase=1;rank=4 scaffold_157 . CDS 25912 26000 . + 0 ID=Phyra85259;Parent=Phyra85259;rank=5 scaffold_157 . exon 25912 26000 . + . ID=Phyra85259.5;Parent=Phyra85259;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_157 . CDS 26069 26645 . + 0 ID=Phyra85259;Parent=Phyra85259;rank=6 scaffold_157 . exon 26069 26645 . + . ID=Phyra85259.6;Parent=Phyra85259;constitutive=1;ensembl_phase=2;rank=6 scaffold_157 ensembl protein_coding_gene 26875 28434 . - . ID=Phyra85260;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_157000009;logic_name=jgi_phyra1 scaffold_157 ensembl transcript 26875 28434 . - . ID=Phyra85260;Parent=Phyra85260;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_157 . CDS 26875 28434 . - 0 ID=Phyra85260;Parent=Phyra85260;rank=1 scaffold_157 . exon 26875 28434 . - . ID=Phyra85260.1;Parent=Phyra85260;constitutive=1;rank=1 scaffold_157 . repeat_region 29096 29104 . ? . description=dust scaffold_157 . repeat_region 31453 31473 . ? . description=trf scaffold_157 . repeat_region 37197 37215 . ? . description=dust scaffold_157 ensembl protein_coding_gene 32376 33563 . + . ID=Phyra72319;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_157000003;logic_name=jgi_phyra1 scaffold_157 ensembl transcript 32376 33563 . + . ID=Phyra72319;Parent=Phyra72319;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_157 . CDS 32376 33563 . + 0 ID=Phyra72319;Parent=Phyra72319;rank=1 scaffold_157 . exon 32376 33563 . + . ID=Phyra72319.1;Parent=Phyra72319;constitutive=1;rank=1 scaffold_157 ensembl protein_coding_gene 29620 30765 . + . ID=Phyra85261;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_157000010;logic_name=jgi_phyra1 scaffold_157 ensembl transcript 29620 30765 . + . ID=Phyra85261;Parent=Phyra85261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_157 . CDS 29620 30765 . + 0 ID=Phyra85261;Parent=Phyra85261;rank=1 scaffold_157 . exon 29620 30765 . + . ID=Phyra85261.1;Parent=Phyra85261;constitutive=1;rank=1 scaffold_157 ensembl protein_coding_gene 33700 35694 . + . ID=Phyra85263;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_157000012;logic_name=jgi_phyra1 scaffold_157 ensembl transcript 33700 35694 . + . ID=Phyra85263;Parent=Phyra85263;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_157 . CDS 33700 35694 . + 0 ID=Phyra85263;Parent=Phyra85263;rank=1 scaffold_157 . exon 33700 35694 . + . ID=Phyra85263.1;Parent=Phyra85263;constitutive=1;rank=1 scaffold_157 ensembl protein_coding_gene 36916 38226 . + . ID=Phyra85264;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_157000013;logic_name=jgi_phyra1 scaffold_157 ensembl transcript 36916 38226 . + . ID=Phyra85264;Parent=Phyra85264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_157 . CDS 36916 38226 . + 0 ID=Phyra85264;Parent=Phyra85264;rank=1 scaffold_157 . exon 36916 38226 . + . ID=Phyra85264.1;Parent=Phyra85264;constitutive=1;rank=1 scaffold_157 . biological_region 37748 37754 0.999 + . logic_name=eponine scaffold_157 . biological_region 38061 38062 0.999 + . logic_name=eponine scaffold_157 . biological_region 39029 39034 0.999 + . logic_name=eponine scaffold_157 . biological_region 39159 39161 0.999 - . logic_name=eponine scaffold_157 . biological_region 39286 39287 0.999 - . logic_name=eponine scaffold_157 . biological_region 39563 39565 0.999 + . logic_name=eponine scaffold_157 . biological_region 39669 39670 0.999 - . logic_name=eponine scaffold_157 . biological_region 41142 41143 0.999 - . logic_name=eponine scaffold_157 . biological_region 41311 41316 0.999 + . logic_name=eponine scaffold_157 . biological_region 41348 41354 0.999 - . logic_name=eponine scaffold_157 . biological_region 41855 41860 0.999 - . logic_name=eponine scaffold_157 . repeat_region 42557 42853 . - . description=GypsyPi-1c_LTR scaffold_157 . repeat_region 42854 43969 . - . description=GypsyPi-1c_I-int scaffold_157 . biological_region 43125 43134 0.999 + . logic_name=eponine scaffold_157 . biological_region 43142 43147 0.999 - . logic_name=eponine scaffold_157 . biological_region 43168 43170 0.999 - . logic_name=eponine scaffold_157 . biological_region 43177 43177 0.999 + . logic_name=eponine scaffold_157 . biological_region 43244 43249 0.999 - . logic_name=eponine scaffold_157 . biological_region 43512 43515 0.999 + . logic_name=eponine scaffold_157 . biological_region 43991 43993 0.999 + . logic_name=eponine scaffold_157 . repeat_region 44347 44463 . + . description=GypsyPi-1c_I-int scaffold_157 . repeat_region 45614 46673 . - . description=GypsyPi-1c_I-int scaffold_157 . repeat_region 46727 47333 . + . description=GypsyPi-1c_I-int scaffold_157 ensembl protein_coding_gene 39558 42042 . - . ID=Phyra72320;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_157000004;logic_name=jgi_phyra1 scaffold_157 ensembl transcript 39558 42042 . - . ID=Phyra72320;Parent=Phyra72320;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_157 . CDS 39558 39615 . - 0 ID=Phyra72320;Parent=Phyra72320;rank=3 scaffold_157 . exon 39558 39615 . - . ID=Phyra72320.3;Parent=Phyra72320;constitutive=1;ensembl_phase=2;rank=3 scaffold_157 . CDS 39653 41262 . - 0 ID=Phyra72320;Parent=Phyra72320;rank=2 scaffold_157 . exon 39653 41262 . - . ID=Phyra72320.2;Parent=Phyra72320;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_157 . CDS 41329 42042 . - 0 ID=Phyra72320;Parent=Phyra72320;rank=1 scaffold_157 . exon 41329 42042 . - . ID=Phyra72320.1;Parent=Phyra72320;constitutive=1;rank=1 scaffold_157 ensembl protein_coding_gene 38529 39311 . - . ID=Phyra85265;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_157000014;logic_name=jgi_phyra1 scaffold_157 ensembl transcript 38529 39311 . - . ID=Phyra85265;Parent=Phyra85265;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_157 . CDS 38529 39311 . - 0 ID=Phyra85265;Parent=Phyra85265;rank=1 scaffold_157 . exon 38529 39311 . - . ID=Phyra85265.1;Parent=Phyra85265;constitutive=1;rank=1 scaffold_157 ensembl protein_coding_gene 43036 45679 . + . ID=Phyra85267;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_157000016;logic_name=jgi_phyra1 scaffold_157 ensembl transcript 43036 45679 . + . ID=Phyra85267;Parent=Phyra85267;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_157 . CDS 43036 43976 . + 0 ID=Phyra85267;Parent=Phyra85267;rank=1 scaffold_157 . exon 43036 43976 . + . ID=Phyra85267.1;Parent=Phyra85267;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_157 . CDS 44158 44590 . + 0 ID=Phyra85267;Parent=Phyra85267;rank=2 scaffold_157 . exon 44158 44590 . + . ID=Phyra85267.2;Parent=Phyra85267;constitutive=1;ensembl_phase=2;rank=2 scaffold_157 . CDS 44713 44856 . + 0 ID=Phyra85267;Parent=Phyra85267;rank=3 scaffold_157 . exon 44713 44856 . + . ID=Phyra85267.3;Parent=Phyra85267;constitutive=1;rank=3 scaffold_157 . CDS 45137 45679 . + 0 ID=Phyra85267;Parent=Phyra85267;rank=4 scaffold_157 . exon 45137 45679 . + . ID=Phyra85267.4;Parent=Phyra85267;constitutive=1;rank=4 scaffold_157 ensembl protein_coding_gene 45919 46646 . - . ID=Phyra85268;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_157000017;logic_name=jgi_phyra1 scaffold_157 ensembl transcript 45919 46646 . - . ID=Phyra85268;Parent=Phyra85268;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_157 . CDS 45919 45924 . - 0 ID=Phyra85268;Parent=Phyra85268;rank=2 scaffold_157 . exon 45919 45924 . - . ID=Phyra85268.2;Parent=Phyra85268;constitutive=1;rank=2 scaffold_157 . CDS 46023 46646 . - 0 ID=Phyra85268;Parent=Phyra85268;rank=1 scaffold_157 . exon 46023 46646 . - . ID=Phyra85268.1;Parent=Phyra85268;constitutive=1;rank=1 scaffold_157 . repeat_region 47742 47791 . ? . description=dust scaffold_157 . repeat_region 49256 54789 . ? . description=dust scaffold_157 . repeat_region 55564 55592 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_156 1 56601 scaffold_156 . repeat_region 5377 5384 . ? . description=dust scaffold_156 ensembl protein_coding_gene 5760 6625 . - . ID=Phyra72315;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_156000001;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 5760 6625 . - . ID=Phyra72315;Parent=Phyra72315;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 5760 5798 . - 0 ID=Phyra72315;Parent=Phyra72315;rank=7 scaffold_156 . exon 5760 5798 . - . ID=Phyra72315.7;Parent=Phyra72315;constitutive=1;rank=7 scaffold_156 . CDS 5906 6018 . - 0 ID=Phyra72315;Parent=Phyra72315;rank=6 scaffold_156 . exon 5906 6018 . - . ID=Phyra72315.6;Parent=Phyra72315;constitutive=1;ensembl_phase=1;rank=6 scaffold_156 . CDS 6090 6121 . - 0 ID=Phyra72315;Parent=Phyra72315;rank=5 scaffold_156 . exon 6090 6121 . - . ID=Phyra72315.5;Parent=Phyra72315;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_156 . CDS 6181 6231 . - 0 ID=Phyra72315;Parent=Phyra72315;rank=4 scaffold_156 . exon 6181 6231 . - . ID=Phyra72315.4;Parent=Phyra72315;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_156 . CDS 6306 6406 . - 0 ID=Phyra72315;Parent=Phyra72315;rank=3 scaffold_156 . exon 6306 6406 . - . ID=Phyra72315.3;Parent=Phyra72315;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_156 . CDS 6508 6509 . - 0 ID=Phyra72315;Parent=Phyra72315;rank=2 scaffold_156 . exon 6508 6509 . - . ID=Phyra72315.2;Parent=Phyra72315;constitutive=1;ensembl_phase=1;rank=2 scaffold_156 . CDS 6565 6625 . - 0 ID=Phyra72315;Parent=Phyra72315;rank=1 scaffold_156 . exon 6565 6625 . - . ID=Phyra72315.1;Parent=Phyra72315;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_156 ensembl protein_coding_gene 79 1688 . + . ID=Phyra85231;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_156000001;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 79 1688 . + . ID=Phyra85231;Parent=Phyra85231;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . exon 79 1688 . + . ID=Phyra85231.1;Parent=Phyra85231;constitutive=1;ensembl_phase=-1;rank=1 scaffold_156 . CDS 81 1688 . + 0 ID=Phyra85231;Parent=Phyra85231;rank=1 scaffold_156 ensembl protein_coding_gene 4129 5167 . + . ID=Phyra85234;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_156000004;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 4129 5167 . + . ID=Phyra85234;Parent=Phyra85234;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 4129 4417 . + 0 ID=Phyra85234;Parent=Phyra85234;rank=1 scaffold_156 . exon 4129 4417 . + . ID=Phyra85234.1;Parent=Phyra85234;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_156 . CDS 4488 5167 . + 0 ID=Phyra85234;Parent=Phyra85234;rank=2 scaffold_156 . exon 4488 5167 . + . ID=Phyra85234.2;Parent=Phyra85234;constitutive=1;ensembl_phase=1;rank=2 scaffold_156 ensembl protein_coding_gene 6931 7635 . - . ID=Phyra85236;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_156000006;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 6931 7635 . - . ID=Phyra85236;Parent=Phyra85236;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 6931 7635 . - 0 ID=Phyra85236;Parent=Phyra85236;rank=1 scaffold_156 . exon 6931 7635 . - . ID=Phyra85236.1;Parent=Phyra85236;constitutive=1;rank=1 scaffold_156 ensembl protein_coding_gene 8105 8728 . + . ID=Phyra85237;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_156000007;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 8105 8728 . + . ID=Phyra85237;Parent=Phyra85237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 8105 8728 . + 0 ID=Phyra85237;Parent=Phyra85237;rank=1 scaffold_156 . exon 8105 8728 . + . ID=Phyra85237.1;Parent=Phyra85237;constitutive=1;rank=1 scaffold_156 ensembl protein_coding_gene 8873 11332 . - . ID=Phyra85238;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_156000008;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 8873 11332 . - . ID=Phyra85238;Parent=Phyra85238;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 8873 11332 . - 0 ID=Phyra85238;Parent=Phyra85238;rank=1 scaffold_156 . exon 8873 11332 . - . ID=Phyra85238.1;Parent=Phyra85238;constitutive=1;rank=1 scaffold_156 ensembl protein_coding_gene 1865 2896 . - . ID=Phyra97076;biotype=protein_coding;external_name=C_scaffold_156000002;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 1865 2896 . - . ID=Phyra97076;Parent=Phyra97076;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 1865 1912 . - 0 ID=Phyra97076;Parent=Phyra97076;rank=6 scaffold_156 . exon 1865 1912 . - . ID=Phyra97076.6;Parent=Phyra97076;constitutive=1;rank=6 scaffold_156 . CDS 1973 2031 . - 0 ID=Phyra97076;Parent=Phyra97076;rank=5 scaffold_156 . exon 1973 2031 . - . ID=Phyra97076.5;Parent=Phyra97076;constitutive=1;ensembl_phase=1;rank=5 scaffold_156 . CDS 2129 2288 . - 0 ID=Phyra97076;Parent=Phyra97076;rank=4 scaffold_156 . exon 2129 2288 . - . ID=Phyra97076.4;Parent=Phyra97076;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_156 . CDS 2389 2547 . - 0 ID=Phyra97076;Parent=Phyra97076;rank=3 scaffold_156 . exon 2389 2547 . - . ID=Phyra97076.3;Parent=Phyra97076;constitutive=1;rank=3 scaffold_156 . CDS 2623 2687 . - 0 ID=Phyra97076;Parent=Phyra97076;rank=2 scaffold_156 . exon 2623 2687 . - . ID=Phyra97076.2;Parent=Phyra97076;constitutive=1;ensembl_phase=1;rank=2 scaffold_156 . CDS 2776 2896 . - 0 ID=Phyra97076;Parent=Phyra97076;rank=1 scaffold_156 . exon 2776 2896 . - . ID=Phyra97076.1;Parent=Phyra97076;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_156 ensembl protein_coding_gene 2984 4003 . - . ID=Phyra97077;biotype=protein_coding;external_name=C_scaffold_156000003;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 2984 4003 . - . ID=Phyra97077;Parent=Phyra97077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 2984 3115 . - 0 ID=Phyra97077;Parent=Phyra97077;rank=3 scaffold_156 . exon 2984 3115 . - . ID=Phyra97077.3;Parent=Phyra97077;constitutive=1;rank=3 scaffold_156 . CDS 3190 3759 . - 0 ID=Phyra97077;Parent=Phyra97077;rank=2 scaffold_156 . exon 3190 3759 . - . ID=Phyra97077.2;Parent=Phyra97077;constitutive=1;rank=2 scaffold_156 . CDS 3866 4003 . - 0 ID=Phyra97077;Parent=Phyra97077;rank=1 scaffold_156 . exon 3866 4003 . - . ID=Phyra97077.1;Parent=Phyra97077;constitutive=1;rank=1 scaffold_156 . biological_region 12099 12103 0.999 + . logic_name=eponine scaffold_156 . biological_region 13007 13007 0.999 + . logic_name=eponine scaffold_156 . biological_region 13025 13027 0.999 + . logic_name=eponine scaffold_156 . repeat_region 14713 14747 . ? . description=trf scaffold_156 ensembl protein_coding_gene 12087 12674 . - . ID=Phyra85239;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_156000009;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 12087 12674 . - . ID=Phyra85239;Parent=Phyra85239;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 12087 12674 . - 0 ID=Phyra85239;Parent=Phyra85239;rank=1 scaffold_156 . exon 12087 12674 . - . ID=Phyra85239.1;Parent=Phyra85239;constitutive=1;rank=1 scaffold_156 ensembl protein_coding_gene 12822 16189 . + . ID=Phyra85240;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_156000010;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 12822 16189 . + . ID=Phyra85240;Parent=Phyra85240;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 12822 13196 . + 0 ID=Phyra85240;Parent=Phyra85240;rank=1 scaffold_156 . exon 12822 13196 . + . ID=Phyra85240.1;Parent=Phyra85240;constitutive=1;rank=1 scaffold_156 . CDS 13257 13327 . + 0 ID=Phyra85240;Parent=Phyra85240;rank=2 scaffold_156 . exon 13257 13327 . + . ID=Phyra85240.2;Parent=Phyra85240;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_156 . CDS 13398 15981 . + 0 ID=Phyra85240;Parent=Phyra85240;rank=3 scaffold_156 . exon 13398 15981 . + . ID=Phyra85240.3;Parent=Phyra85240;constitutive=1;ensembl_phase=2;rank=3 scaffold_156 . CDS 16064 16189 . + 0 ID=Phyra85240;Parent=Phyra85240;rank=4 scaffold_156 . exon 16064 16189 . + . ID=Phyra85240.4;Parent=Phyra85240;constitutive=1;rank=4 scaffold_156 ensembl protein_coding_gene 16324 17618 . - . ID=Phyra85241;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_156000011;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 16324 17618 . - . ID=Phyra85241;Parent=Phyra85241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 16324 17343 . - 0 ID=Phyra85241;Parent=Phyra85241;rank=2 scaffold_156 . exon 16324 17343 . - . ID=Phyra85241.2;Parent=Phyra85241;constitutive=1;rank=2 scaffold_156 . CDS 17430 17618 . - 0 ID=Phyra85241;Parent=Phyra85241;rank=1 scaffold_156 . exon 17430 17618 . - . ID=Phyra85241.1;Parent=Phyra85241;constitutive=1;rank=1 scaffold_156 ensembl protein_coding_gene 17782 19029 . + . ID=Phyra85242;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_156000012;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 17782 19029 . + . ID=Phyra85242;Parent=Phyra85242;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 17782 18145 . + 0 ID=Phyra85242;Parent=Phyra85242;rank=1 scaffold_156 . exon 17782 18145 . + . ID=Phyra85242.1;Parent=Phyra85242;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_156 . CDS 18218 18628 . + 0 ID=Phyra85242;Parent=Phyra85242;rank=2 scaffold_156 . exon 18218 18628 . + . ID=Phyra85242.2;Parent=Phyra85242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_156 . CDS 18908 19029 . + 0 ID=Phyra85242;Parent=Phyra85242;rank=3 scaffold_156 . repeat_region 27974 27990 . ? . description=dust scaffold_156 . repeat_region 28040 28047 . ? . description=dust scaffold_156 ensembl protein_coding_gene 25891 27947 . - . ID=Phyra72316;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_156000002;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 25891 27947 . - . ID=Phyra72316;Parent=Phyra72316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 25891 27693 . - 0 ID=Phyra72316;Parent=Phyra72316;rank=2 scaffold_156 . exon 25891 27693 . - . ID=Phyra72316.2;Parent=Phyra72316;constitutive=1;rank=2 scaffold_156 . CDS 27909 27947 . - 0 ID=Phyra72316;Parent=Phyra72316;rank=1 scaffold_156 . exon 27909 27947 . - . ID=Phyra72316.1;Parent=Phyra72316;constitutive=1;rank=1 scaffold_156 . exon 18908 19029 . + . ID=Phyra85242.3;Parent=Phyra85242;constitutive=1;ensembl_phase=1;rank=3 scaffold_156 ensembl protein_coding_gene 19230 22483 . - . ID=Phyra85243;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_156000013;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 19230 22483 . - . ID=Phyra85243;Parent=Phyra85243;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 19230 20453 . - 0 ID=Phyra85243;Parent=Phyra85243;rank=10 scaffold_156 . exon 19230 20453 . - . ID=Phyra85243.10;Parent=Phyra85243;constitutive=1;rank=10 scaffold_156 . CDS 20538 20826 . - 0 ID=Phyra85243;Parent=Phyra85243;rank=9 scaffold_156 . exon 20538 20826 . - . ID=Phyra85243.9;Parent=Phyra85243;constitutive=1;ensembl_phase=2;rank=9 scaffold_156 . CDS 20901 20984 . - 0 ID=Phyra85243;Parent=Phyra85243;rank=8 scaffold_156 . exon 20901 20984 . - . ID=Phyra85243.8;Parent=Phyra85243;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_156 . CDS 21056 21160 . - 0 ID=Phyra85243;Parent=Phyra85243;rank=7 scaffold_156 . exon 21056 21160 . - . ID=Phyra85243.7;Parent=Phyra85243;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_156 . CDS 21406 21572 . - 0 ID=Phyra85243;Parent=Phyra85243;rank=6 scaffold_156 . exon 21406 21572 . - . ID=Phyra85243.6;Parent=Phyra85243;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_156 . CDS 21683 21754 . - 0 ID=Phyra85243;Parent=Phyra85243;rank=5 scaffold_156 . exon 21683 21754 . - . ID=Phyra85243.5;Parent=Phyra85243;constitutive=1;rank=5 scaffold_156 . CDS 21825 21875 . - 0 ID=Phyra85243;Parent=Phyra85243;rank=4 scaffold_156 . exon 21825 21875 . - . ID=Phyra85243.4;Parent=Phyra85243;constitutive=1;rank=4 scaffold_156 . CDS 21973 22035 . - 0 ID=Phyra85243;Parent=Phyra85243;rank=3 scaffold_156 . exon 21973 22035 . - . ID=Phyra85243.3;Parent=Phyra85243;constitutive=1;rank=3 scaffold_156 . CDS 22132 22211 . - 0 ID=Phyra85243;Parent=Phyra85243;rank=2 scaffold_156 . exon 22132 22211 . - . ID=Phyra85243.2;Parent=Phyra85243;constitutive=1;ensembl_phase=1;rank=2 scaffold_156 . CDS 22285 22483 . - 0 ID=Phyra85243;Parent=Phyra85243;rank=1 scaffold_156 . exon 22285 22483 . - . ID=Phyra85243.1;Parent=Phyra85243;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_156 ensembl protein_coding_gene 28268 28912 . + . ID=Phyra97079;biotype=protein_coding;external_name=C_scaffold_156000005;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 28268 28912 . + . ID=Phyra97079;Parent=Phyra97079;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 28268 28347 . + 0 ID=Phyra97079;Parent=Phyra97079;rank=1 scaffold_156 . exon 28268 28347 . + . ID=Phyra97079.1;Parent=Phyra97079;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_156 . CDS 28441 28506 . + 0 ID=Phyra97079;Parent=Phyra97079;rank=2 scaffold_156 . CDS 28578 28630 . + 0 ID=Phyra97079;Parent=Phyra97079;rank=3 scaffold_156 . CDS 28716 28912 . + 0 ID=Phyra97079;Parent=Phyra97079;rank=4 scaffold_156 . biological_region 31267 31270 0.999 + . logic_name=eponine scaffold_156 . biological_region 31323 31328 0.999 - . logic_name=eponine scaffold_156 . biological_region 31426 31427 0.999 - . logic_name=eponine scaffold_156 . biological_region 31911 31915 0.999 + . logic_name=eponine scaffold_156 . biological_region 32931 32934 0.999 - . logic_name=eponine scaffold_156 . repeat_region 37111 37149 . ? . description=trf scaffold_156 ensembl protein_coding_gene 30734 31531 . - . ID=Phyra85246;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_156000016;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 30734 31531 . - . ID=Phyra85246;Parent=Phyra85246;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 30734 31531 . - 0 ID=Phyra85246;Parent=Phyra85246;rank=1 scaffold_156 . exon 30734 31531 . - . ID=Phyra85246.1;Parent=Phyra85246;constitutive=1;rank=1 scaffold_156 ensembl protein_coding_gene 31907 34277 . + . ID=Phyra85247;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_156000017;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 31907 34277 . + . ID=Phyra85247;Parent=Phyra85247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 31907 33814 . + 0 ID=Phyra85247;Parent=Phyra85247;rank=1 scaffold_156 . exon 31907 33814 . + . ID=Phyra85247.1;Parent=Phyra85247;constitutive=1;rank=1 scaffold_156 . CDS 33888 34277 . + 0 ID=Phyra85247;Parent=Phyra85247;rank=2 scaffold_156 . exon 33888 34277 . + . ID=Phyra85247.2;Parent=Phyra85247;constitutive=1;rank=2 scaffold_156 ensembl protein_coding_gene 35983 36998 . - . ID=Phyra85248;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_156000018;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 35983 36998 . - . ID=Phyra85248;Parent=Phyra85248;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 35983 36014 . - 0 ID=Phyra85248;Parent=Phyra85248;rank=2 scaffold_156 . exon 35983 36014 . - . ID=Phyra85248.2;Parent=Phyra85248;constitutive=1;ensembl_phase=1;rank=2 scaffold_156 . CDS 36227 36998 . - 0 ID=Phyra85248;Parent=Phyra85248;rank=1 scaffold_156 . exon 36227 36998 . - . ID=Phyra85248.1;Parent=Phyra85248;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_156 ensembl protein_coding_gene 37553 39316 . - . ID=Phyra85249;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_156000019;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 37553 39316 . - . ID=Phyra85249;Parent=Phyra85249;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 37553 38025 . - 0 ID=Phyra85249;Parent=Phyra85249;rank=4 scaffold_156 . exon 37553 38025 . - . ID=Phyra85249.4;Parent=Phyra85249;constitutive=1;ensembl_phase=1;rank=4 scaffold_156 . CDS 38312 38611 . - 0 ID=Phyra85249;Parent=Phyra85249;rank=3 scaffold_156 . CDS 38681 38824 . - 0 ID=Phyra85249;Parent=Phyra85249;rank=2 scaffold_156 . CDS 38956 39316 . - 0 ID=Phyra85249;Parent=Phyra85249;rank=1 scaffold_156 . exon 28441 28506 . + . ID=Phyra97079.2;Parent=Phyra97079;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_156 . exon 28578 28630 . + . ID=Phyra97079.3;Parent=Phyra97079;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_156 . exon 28716 28912 . + . ID=Phyra97079.4;Parent=Phyra97079;constitutive=1;ensembl_phase=1;rank=4 scaffold_156 . repeat_region 44710 44717 . ? . description=dust scaffold_156 . exon 38312 38611 . - . ID=Phyra85249.3;Parent=Phyra85249;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_156 . exon 38681 38824 . - . ID=Phyra85249.2;Parent=Phyra85249;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_156 . exon 38956 39316 . - . ID=Phyra85249.1;Parent=Phyra85249;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_156 ensembl protein_coding_gene 45351 51030 . - . ID=Phyra85250;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_156000020;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 45351 51030 . - . ID=Phyra85250;Parent=Phyra85250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 45351 46025 . - 0 ID=Phyra85250;Parent=Phyra85250;rank=5 scaffold_156 . exon 45351 46025 . - . ID=Phyra85250.5;Parent=Phyra85250;constitutive=1;rank=5 scaffold_156 . CDS 46319 46328 . - 0 ID=Phyra85250;Parent=Phyra85250;rank=4 scaffold_156 . exon 46319 46328 . - . ID=Phyra85250.4;Parent=Phyra85250;constitutive=1;ensembl_phase=2;rank=4 scaffold_156 . CDS 47382 47497 . - 0 ID=Phyra85250;Parent=Phyra85250;rank=3 scaffold_156 . CDS 47563 50048 . - 0 ID=Phyra85250;Parent=Phyra85250;rank=2 scaffold_156 . CDS 50151 51030 . - 0 ID=Phyra85250;Parent=Phyra85250;rank=1 scaffold_156 . biological_region 48706 48709 0.999 + . logic_name=eponine scaffold_156 . repeat_region 48819 48849 . ? . description=trf scaffold_156 . biological_region 49955 49959 0.999 - . logic_name=eponine scaffold_156 . biological_region 50012 50018 0.999 + . logic_name=eponine scaffold_156 . repeat_region 51312 51372 . ? . description=trf scaffold_156 . biological_region 55658 55662 0.999 - . logic_name=eponine scaffold_156 . exon 47382 47497 . - . ID=Phyra85250.3;Parent=Phyra85250;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_156 . exon 47563 50048 . - . ID=Phyra85250.2;Parent=Phyra85250;constitutive=1;ensembl_phase=1;rank=2 scaffold_156 . exon 50151 51030 . - . ID=Phyra85250.1;Parent=Phyra85250;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_156 ensembl protein_coding_gene 55370 56593 . + . ID=Phyra85251;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_156000021;logic_name=jgi_phyra1 scaffold_156 ensembl transcript 55370 56593 . + . ID=Phyra85251;Parent=Phyra85251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_156 . CDS 55370 56593 . + 0 ID=Phyra85251;Parent=Phyra85251;rank=1 scaffold_156 . exon 55370 56593 . + . ID=Phyra85251.1;Parent=Phyra85251;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_155 1 58139 scaffold_155 . repeat_region 1550 1573 . ? . description=trf scaffold_155 . biological_region 1989 1991 0.999 + . logic_name=eponine scaffold_155 . biological_region 2038 2041 0.999 - . logic_name=eponine scaffold_155 . biological_region 6212 6215 0.999 + . logic_name=eponine scaffold_155 . biological_region 6288 6290 0.999 + . logic_name=eponine scaffold_155 . biological_region 6520 6521 0.999 + . logic_name=eponine scaffold_155 . biological_region 6677 6678 0.999 - . logic_name=eponine scaffold_155 . biological_region 7769 7774 0.999 + . logic_name=eponine scaffold_155 . biological_region 7892 7897 0.999 - . logic_name=eponine scaffold_155 . biological_region 8316 8319 0.999 + . logic_name=eponine scaffold_155 ensembl protein_coding_gene 7780 9707 . + . ID=Phyra72314;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_155000001;logic_name=jgi_phyra1 scaffold_155 ensembl transcript 7780 9707 . + . ID=Phyra72314;Parent=Phyra72314;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_155 . CDS 7780 7945 . + 0 ID=Phyra72314;Parent=Phyra72314;rank=1 scaffold_155 . exon 7780 7945 . + . ID=Phyra72314.1;Parent=Phyra72314;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_155 . CDS 7987 8662 . + 0 ID=Phyra72314;Parent=Phyra72314;rank=2 scaffold_155 . exon 7987 8662 . + . ID=Phyra72314.2;Parent=Phyra72314;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_155 . CDS 8736 8868 . + 0 ID=Phyra72314;Parent=Phyra72314;rank=3 scaffold_155 . exon 8736 8868 . + . ID=Phyra72314.3;Parent=Phyra72314;constitutive=1;ensembl_phase=2;rank=3 scaffold_155 . CDS 8942 9176 . + 0 ID=Phyra72314;Parent=Phyra72314;rank=4 scaffold_155 . exon 8942 9176 . + . ID=Phyra72314.4;Parent=Phyra72314;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_155 . CDS 9253 9707 . + 0 ID=Phyra72314;Parent=Phyra72314;rank=5 scaffold_155 . exon 9253 9707 . + . ID=Phyra72314.5;Parent=Phyra72314;constitutive=1;ensembl_phase=1;rank=5 scaffold_155 ensembl protein_coding_gene 1342 2211 . - . ID=Phyra85224;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_155000001;logic_name=jgi_phyra1 scaffold_155 ensembl transcript 1342 2211 . - . ID=Phyra85224;Parent=Phyra85224;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_155 . CDS 1342 2211 . - 0 ID=Phyra85224;Parent=Phyra85224;rank=1 scaffold_155 . exon 1342 2211 . - . ID=Phyra85224.1;Parent=Phyra85224;constitutive=1;rank=1 scaffold_155 ensembl protein_coding_gene 3050 4818 . + . ID=Phyra85225;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_155000002;logic_name=jgi_phyra1 scaffold_155 ensembl transcript 3050 4818 . + . ID=Phyra85225;Parent=Phyra85225;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_155 . CDS 3050 3196 . + 0 ID=Phyra85225;Parent=Phyra85225;rank=1 scaffold_155 . exon 3050 3196 . + . ID=Phyra85225.1;Parent=Phyra85225;constitutive=1;rank=1 scaffold_155 . CDS 3279 3528 . + 0 ID=Phyra85225;Parent=Phyra85225;rank=2 scaffold_155 . exon 3279 3528 . + . ID=Phyra85225.2;Parent=Phyra85225;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_155 . CDS 3670 3705 . + 0 ID=Phyra85225;Parent=Phyra85225;rank=3 scaffold_155 . exon 3670 3705 . + . ID=Phyra85225.3;Parent=Phyra85225;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_155 . CDS 3725 4818 . + 0 ID=Phyra85225;Parent=Phyra85225;rank=4 scaffold_155 . exon 3725 4818 . + . ID=Phyra85225.4;Parent=Phyra85225;constitutive=1;ensembl_phase=1;rank=4 scaffold_155 ensembl protein_coding_gene 12049 12180 . + . ID=Phyra42213;biotype=protein_coding;external_name=gwEuk.155.12.1;logic_name=jgi_phyra1 scaffold_155 ensembl transcript 12049 12180 . + . ID=Phyra42213;Parent=Phyra42213;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_155 . CDS 12049 12180 . + 0 ID=Phyra42213;Parent=Phyra42213;rank=1 scaffold_155 . exon 12049 12180 . + . ID=Phyra42213.1;Parent=Phyra42213;constitutive=1;rank=1 scaffold_155 ensembl protein_coding_gene 10006 11607 . - . ID=Phyra85227;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_155000004;logic_name=jgi_phyra1 scaffold_155 ensembl transcript 10006 11607 . - . ID=Phyra85227;Parent=Phyra85227;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_155 . CDS 10006 10726 . - 0 ID=Phyra85227;Parent=Phyra85227;rank=2 scaffold_155 . exon 10006 10726 . - . ID=Phyra85227.2;Parent=Phyra85227;constitutive=1;ensembl_phase=2;rank=2 scaffold_155 . CDS 10799 11607 . - 0 ID=Phyra85227;Parent=Phyra85227;rank=1 scaffold_155 . exon 10799 11607 . - . ID=Phyra85227.1;Parent=Phyra85227;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_155 ensembl protein_coding_gene 12513 14531 . - . ID=Phyra85228;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_155000005;logic_name=jgi_phyra1 scaffold_155 ensembl transcript 12513 14531 . - . ID=Phyra85228;Parent=Phyra85228;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_155 . CDS 12513 14531 . - 0 ID=Phyra85228;Parent=Phyra85228;rank=1 scaffold_155 . exon 12513 14531 . - . ID=Phyra85228.1;Parent=Phyra85228;constitutive=1;rank=1 scaffold_155 ensembl protein_coding_gene 14692 15926 . + . ID=Phyra85229;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_155000006;logic_name=jgi_phyra1 scaffold_155 ensembl transcript 14692 15926 . + . ID=Phyra85229;Parent=Phyra85229;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_155 . CDS 14692 14991 . + 0 ID=Phyra85229;Parent=Phyra85229;rank=1 scaffold_155 . exon 14692 14991 . + . ID=Phyra85229.1;Parent=Phyra85229;constitutive=1;rank=1 scaffold_155 . CDS 15051 15926 . + 0 ID=Phyra85229;Parent=Phyra85229;rank=2 scaffold_155 . exon 15051 15926 . + . ID=Phyra85229.2;Parent=Phyra85229;constitutive=1;rank=2 scaffold_155 ensembl protein_coding_gene 16189 22531 . - . ID=Phyra97074;biotype=protein_coding;external_name=C_scaffold_155000001;logic_name=jgi_phyra1 scaffold_155 ensembl transcript 16189 22531 . - . ID=Phyra97074;Parent=Phyra97074;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_155 . CDS 16189 16208 . - 0 ID=Phyra97074;Parent=Phyra97074;rank=16 scaffold_155 . exon 16189 16208 . - . ID=Phyra97074.16;Parent=Phyra97074;constitutive=1;ensembl_phase=1;rank=16 scaffold_155 . CDS 16280 16400 . - 0 ID=Phyra97074;Parent=Phyra97074;rank=15 scaffold_155 . exon 16280 16400 . - . ID=Phyra97074.15;Parent=Phyra97074;constitutive=1;ensembl_end_phase=1;rank=15 scaffold_155 . CDS 16477 16707 . - 0 ID=Phyra97074;Parent=Phyra97074;rank=14 scaffold_155 . exon 16477 16707 . - . ID=Phyra97074.14;Parent=Phyra97074;constitutive=1;rank=14 scaffold_155 . CDS 17147 17260 . - 0 ID=Phyra97074;Parent=Phyra97074;rank=13 scaffold_155 . exon 17147 17260 . - . ID=Phyra97074.13;Parent=Phyra97074;constitutive=1;rank=13 scaffold_155 . CDS 18035 18122 . - 0 ID=Phyra97074;Parent=Phyra97074;rank=12 scaffold_155 . exon 18035 18122 . - . ID=Phyra97074.12;Parent=Phyra97074;constitutive=1;ensembl_phase=2;rank=12 scaffold_155 . CDS 18323 18420 . - 0 ID=Phyra97074;Parent=Phyra97074;rank=11 scaffold_155 . exon 18323 18420 . - . ID=Phyra97074.11;Parent=Phyra97074;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_155 . CDS 18568 18792 . - 0 ID=Phyra97074;Parent=Phyra97074;rank=10 scaffold_155 . exon 18568 18792 . - . ID=Phyra97074.10;Parent=Phyra97074;constitutive=1;rank=10 scaffold_155 . CDS 18874 19165 . - 0 ID=Phyra97074;Parent=Phyra97074;rank=9 scaffold_155 . exon 18874 19165 . - . ID=Phyra97074.9;Parent=Phyra97074;constitutive=1;ensembl_phase=2;rank=9 scaffold_155 . CDS 19670 20008 . - 0 ID=Phyra97074;Parent=Phyra97074;rank=8 scaffold_155 . CDS 20060 20738 . - 0 ID=Phyra97074;Parent=Phyra97074;rank=7 scaffold_155 . CDS 20844 21257 . - 0 ID=Phyra97074;Parent=Phyra97074;rank=6 scaffold_155 . CDS 21288 21385 . - 0 ID=Phyra97074;Parent=Phyra97074;rank=5 scaffold_155 . CDS 21428 21602 . - 0 ID=Phyra97074;Parent=Phyra97074;rank=4 scaffold_155 . CDS 21859 21931 . - 0 ID=Phyra97074;Parent=Phyra97074;rank=3 scaffold_155 . CDS 21995 22318 . - 0 ID=Phyra97074;Parent=Phyra97074;rank=2 scaffold_155 . CDS 22382 22531 . - 0 ID=Phyra97074;Parent=Phyra97074;rank=1 scaffold_155 . biological_region 20142 20143 0.999 - . logic_name=eponine scaffold_155 . biological_region 20576 20577 0.999 - . logic_name=eponine scaffold_155 . biological_region 20780 20784 0.999 - . logic_name=eponine scaffold_155 . biological_region 22393 22395 0.999 + . logic_name=eponine scaffold_155 . biological_region 22469 22472 0.999 - . logic_name=eponine scaffold_155 . repeat_region 22595 22602 . ? . description=dust scaffold_155 . repeat_region 22765 22773 . ? . description=dust scaffold_155 . biological_region 23632 23635 0.999 + . logic_name=eponine scaffold_155 . repeat_region 24108 24127 . ? . description=trf scaffold_155 . biological_region 25443 25445 0.999 - . logic_name=eponine scaffold_155 . biological_region 25499 25503 0.999 + . logic_name=eponine scaffold_155 . biological_region 25520 25521 0.999 + . logic_name=eponine scaffold_155 . repeat_region 28084 28092 . ? . description=dust scaffold_155 . exon 19670 20008 . - . ID=Phyra97074.8;Parent=Phyra97074;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_155 . exon 20060 20738 . - . ID=Phyra97074.7;Parent=Phyra97074;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_155 . exon 20844 21257 . - . ID=Phyra97074.6;Parent=Phyra97074;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_155 . exon 21288 21385 . - . ID=Phyra97074.5;Parent=Phyra97074;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_155 . exon 21428 21602 . - . ID=Phyra97074.4;Parent=Phyra97074;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_155 . exon 21859 21931 . - . ID=Phyra97074.3;Parent=Phyra97074;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_155 . exon 21995 22318 . - . ID=Phyra97074.2;Parent=Phyra97074;constitutive=1;rank=2 scaffold_155 . exon 22382 22531 . - . ID=Phyra97074.1;Parent=Phyra97074;constitutive=1;rank=1 scaffold_155 . repeat_region 39878 39888 . ? . description=dust scaffold_155 . repeat_region 40817 41033 . ? . description=dust scaffold_155 . repeat_region 41994 42002 . ? . description=dust scaffold_155 . repeat_region 43261 43347 . ? . description=trf scaffold_155 . repeat_region 43733 48700 . ? . description=dust scaffold_155 . biological_region 50817 50823 0.999 + . logic_name=eponine scaffold_155 . biological_region 50822 50826 0.999 - . logic_name=eponine scaffold_155 . biological_region 51831 51833 0.999 - . logic_name=eponine scaffold_155 ensembl tRNA_gene 57230 57301 . - . ID=EPrPRAG00000000064;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_155 ensembl transcript 57230 57301 . - . ID=EPrPRAT00000000064;Parent=EPrPRAG00000000064;biotype=tRNA;logic_name=ncrna_eg scaffold_155 ensembl tRNA_gene 58012 58083 . - . ID=EPrPRAG00000000067;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_155 ensembl transcript 58012 58083 . - . ID=EPrPRAT00000000067;Parent=EPrPRAG00000000067;biotype=tRNA;logic_name=ncrna_eg scaffold_155 ensembl tRNA_gene 57832 57903 . - . ID=EPrPRAG00000000186;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_155 ensembl transcript 57832 57903 . - . ID=EPrPRAT00000000186;Parent=EPrPRAG00000000186;biotype=tRNA;logic_name=ncrna_eg scaffold_155 ensembl tRNA_gene 57050 57121 . - . ID=EPrPRAG00000000190;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_155 ensembl transcript 57050 57121 . - . ID=EPrPRAT00000000190;Parent=EPrPRAG00000000190;biotype=tRNA;logic_name=ncrna_eg scaffold_155 . exon 57230 57301 . - . ID=EPrPRAE00000000064;Parent=EPrPRAT00000000064;constitutive=1;rank=1 scaffold_155 . exon 58012 58083 . - . ID=EPrPRAE00000000067;Parent=EPrPRAT00000000067;constitutive=1;rank=1 scaffold_155 . exon 57832 57903 . - . ID=EPrPRAE00000000186;Parent=EPrPRAT00000000186;constitutive=1;rank=1 scaffold_155 . exon 57050 57121 . - . ID=EPrPRAE00000000190;Parent=EPrPRAT00000000190;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_154 1 58259 scaffold_154 . biological_region 75 77 0.999 + . logic_name=eponine scaffold_154 . biological_region 372 374 0.999 + . logic_name=eponine scaffold_154 . biological_region 2182 2187 0.999 - . logic_name=eponine scaffold_154 . biological_region 3143 3143 0.999 + . logic_name=eponine scaffold_154 . biological_region 3354 3357 0.999 - . logic_name=eponine scaffold_154 . biological_region 3869 3869 0.999 + . logic_name=eponine scaffold_154 . biological_region 4130 4138 0.999 + . logic_name=eponine scaffold_154 . biological_region 4188 4189 0.999 - . logic_name=eponine scaffold_154 . biological_region 4207 4213 0.999 + . logic_name=eponine scaffold_154 . biological_region 4227 4233 0.999 - . logic_name=eponine scaffold_154 . biological_region 4263 4268 0.999 + . logic_name=eponine scaffold_154 . biological_region 4268 4270 0.999 - . logic_name=eponine scaffold_154 . biological_region 4306 4308 0.999 + . logic_name=eponine scaffold_154 . biological_region 4374 4375 0.999 + . logic_name=eponine scaffold_154 . biological_region 4379 4387 0.999 - . logic_name=eponine scaffold_154 . biological_region 4393 4401 0.999 + . logic_name=eponine scaffold_154 . biological_region 4513 4515 0.999 - . logic_name=eponine scaffold_154 . biological_region 4532 4534 0.999 - . logic_name=eponine scaffold_154 . repeat_region 6031 6047 . ? . description=dust scaffold_154 ensembl protein_coding_gene 61 1032 . + . ID=Phyra85217;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_154000001;logic_name=jgi_phyra1 scaffold_154 ensembl transcript 61 1032 . + . ID=Phyra85217;Parent=Phyra85217;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_154 . CDS 61 1032 . + 0 ID=Phyra85217;Parent=Phyra85217;rank=1 scaffold_154 . exon 61 1032 . + . ID=Phyra85217.1;Parent=Phyra85217;constitutive=1;rank=1 scaffold_154 ensembl protein_coding_gene 1755 2722 . - . ID=Phyra85218;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_154000002;logic_name=jgi_phyra1 scaffold_154 ensembl transcript 1755 2722 . - . ID=Phyra85218;Parent=Phyra85218;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_154 . CDS 1755 2324 . - 0 ID=Phyra85218;Parent=Phyra85218;rank=3 scaffold_154 . exon 1755 2324 . - . ID=Phyra85218.3;Parent=Phyra85218;constitutive=1;rank=3 scaffold_154 . CDS 2348 2620 . - 0 ID=Phyra85218;Parent=Phyra85218;rank=2 scaffold_154 . exon 2348 2620 . - . ID=Phyra85218.2;Parent=Phyra85218;constitutive=1;rank=2 scaffold_154 . CDS 2714 2722 . - 0 ID=Phyra85218;Parent=Phyra85218;rank=1 scaffold_154 . exon 2714 2722 . - . ID=Phyra85218.1;Parent=Phyra85218;constitutive=1;rank=1 scaffold_154 ensembl protein_coding_gene 4127 5656 . + . ID=Phyra85219;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_154000003;logic_name=jgi_phyra1 scaffold_154 ensembl transcript 4127 5656 . + . ID=Phyra85219;Parent=Phyra85219;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_154 . CDS 4127 5656 . + 0 ID=Phyra85219;Parent=Phyra85219;rank=1 scaffold_154 . exon 4127 5656 . + . ID=Phyra85219.1;Parent=Phyra85219;constitutive=1;rank=1 scaffold_154 ensembl protein_coding_gene 6242 8491 . - . ID=Phyra85220;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_154000004;logic_name=jgi_phyra1 scaffold_154 ensembl transcript 6242 8491 . - . ID=Phyra85220;Parent=Phyra85220;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_154 . CDS 6242 6246 . - 0 ID=Phyra85220;Parent=Phyra85220;rank=5 scaffold_154 . exon 6242 6246 . - . ID=Phyra85220.5;Parent=Phyra85220;constitutive=1;ensembl_phase=1;rank=5 scaffold_154 . CDS 6392 7337 . - 0 ID=Phyra85220;Parent=Phyra85220;rank=4 scaffold_154 . exon 6392 7337 . - . ID=Phyra85220.4;Parent=Phyra85220;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_154 . CDS 7424 7884 . - 0 ID=Phyra85220;Parent=Phyra85220;rank=3 scaffold_154 . exon 7424 7884 . - . ID=Phyra85220.3;Parent=Phyra85220;constitutive=1;ensembl_phase=1;rank=3 scaffold_154 . CDS 8062 8211 . - 0 ID=Phyra85220;Parent=Phyra85220;rank=2 scaffold_154 . exon 8062 8211 . - . ID=Phyra85220.2;Parent=Phyra85220;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_154 . CDS 8287 8491 . - 0 ID=Phyra85220;Parent=Phyra85220;rank=1 scaffold_154 . exon 8287 8491 . - . ID=Phyra85220.1;Parent=Phyra85220;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_154 ensembl protein_coding_gene 10145 13056 . - . ID=Phyra85221;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_154000005;logic_name=jgi_phyra1 scaffold_154 ensembl transcript 10145 13056 . - . ID=Phyra85221;Parent=Phyra85221;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_154 . CDS 10145 10364 . - 0 ID=Phyra85221;Parent=Phyra85221;rank=11 scaffold_154 . exon 10145 10364 . - . ID=Phyra85221.11;Parent=Phyra85221;constitutive=1;ensembl_phase=2;rank=11 scaffold_154 . CDS 10430 10638 . - 0 ID=Phyra85221;Parent=Phyra85221;rank=10 scaffold_154 . exon 10430 10638 . - . ID=Phyra85221.10;Parent=Phyra85221;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_154 . CDS 10734 10835 . - 0 ID=Phyra85221;Parent=Phyra85221;rank=9 scaffold_154 . exon 10734 10835 . - . ID=Phyra85221.9;Parent=Phyra85221;constitutive=1;rank=9 scaffold_154 . CDS 10906 11139 . - 0 ID=Phyra85221;Parent=Phyra85221;rank=8 scaffold_154 . exon 10906 11139 . - . ID=Phyra85221.8;Parent=Phyra85221;constitutive=1;rank=8 scaffold_154 . CDS 11227 11304 . - 0 ID=Phyra85221;Parent=Phyra85221;rank=7 scaffold_154 . exon 11227 11304 . - . ID=Phyra85221.7;Parent=Phyra85221;constitutive=1;rank=7 scaffold_154 . CDS 11390 11581 . - 0 ID=Phyra85221;Parent=Phyra85221;rank=6 scaffold_154 . exon 11390 11581 . - . ID=Phyra85221.6;Parent=Phyra85221;constitutive=1;rank=6 scaffold_154 . CDS 11666 11779 . - 0 ID=Phyra85221;Parent=Phyra85221;rank=5 scaffold_154 . exon 11666 11779 . - . ID=Phyra85221.5;Parent=Phyra85221;constitutive=1;rank=5 scaffold_154 . CDS 11856 12038 . - 0 ID=Phyra85221;Parent=Phyra85221;rank=4 scaffold_154 . exon 11856 12038 . - . ID=Phyra85221.4;Parent=Phyra85221;constitutive=1;rank=4 scaffold_154 . CDS 12107 12480 . - 0 ID=Phyra85221;Parent=Phyra85221;rank=3 scaffold_154 . exon 12107 12480 . - . ID=Phyra85221.3;Parent=Phyra85221;constitutive=1;ensembl_phase=1;rank=3 scaffold_154 . CDS 12559 12706 . - 0 ID=Phyra85221;Parent=Phyra85221;rank=2 scaffold_154 . exon 12559 12706 . - . ID=Phyra85221.2;Parent=Phyra85221;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_154 . CDS 12766 13056 . - 0 ID=Phyra85221;Parent=Phyra85221;rank=1 scaffold_154 . exon 12766 13056 . - . ID=Phyra85221.1;Parent=Phyra85221;constitutive=1;rank=1 scaffold_154 ensembl protein_coding_gene 13154 14241 . + . ID=Phyra85222;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_154000006;logic_name=jgi_phyra1 scaffold_154 ensembl transcript 13154 14241 . + . ID=Phyra85222;Parent=Phyra85222;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_154 . CDS 13154 14092 . + 0 ID=Phyra85222;Parent=Phyra85222;rank=1 scaffold_154 . exon 13154 14092 . + . ID=Phyra85222.1;Parent=Phyra85222;constitutive=1;rank=1 scaffold_154 . CDS 14200 14241 . + 0 ID=Phyra85222;Parent=Phyra85222;rank=2 scaffold_154 . exon 14200 14241 . + . ID=Phyra85222.2;Parent=Phyra85222;constitutive=1;rank=2 scaffold_154 ensembl protein_coding_gene 27708 29367 . - . ID=Phyra85223;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_154000007;logic_name=jgi_phyra1 scaffold_154 ensembl transcript 27708 29367 . - . ID=Phyra85223;Parent=Phyra85223;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_154 . CDS 27708 29066 . - 0 ID=Phyra85223;Parent=Phyra85223;rank=2 scaffold_154 . exon 27708 29066 . - . ID=Phyra85223.2;Parent=Phyra85223;constitutive=1;rank=2 scaffold_154 . CDS 29140 29367 . - 0 ID=Phyra85223;Parent=Phyra85223;rank=1 scaffold_154 . biological_region 29323 29329 0.999 - . logic_name=eponine scaffold_154 . biological_region 29346 29347 0.999 - . logic_name=eponine scaffold_154 . biological_region 29592 29593 0.999 + . logic_name=eponine scaffold_154 . repeat_region 31110 55636 . ? . description=dust scaffold_154 . exon 29140 29367 . - . ID=Phyra85223.1;Parent=Phyra85223;constitutive=1;rank=1 scaffold_154 . repeat_region 31110 55636 . ? . description=dust scaffold_154 . biological_region 57369 57372 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_153 1 59310 scaffold_153 . biological_region 230 232 0.999 - . logic_name=eponine scaffold_153 . repeat_region 740 762 . ? . description=dust scaffold_153 . repeat_region 1425 1432 . ? . description=dust scaffold_153 . repeat_region 1641 1690 . ? . description=dust scaffold_153 . repeat_region 2681 2727 . + . description=(TCCG)n scaffold_153 . repeat_region 2683 2717 . ? . description=trf scaffold_153 . repeat_region 2683 2717 . ? . description=dust scaffold_153 . repeat_region 2745 30988 . ? . description=dust scaffold_153 ensembl protein_coding_gene 1703 2146 . + . ID=Phyra72313;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_153000001;logic_name=jgi_phyra1 scaffold_153 ensembl transcript 1703 2146 . + . ID=Phyra72313;Parent=Phyra72313;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_153 . CDS 1703 2146 . + 0 ID=Phyra72313;Parent=Phyra72313;rank=1 scaffold_153 . exon 1703 2146 . + . ID=Phyra72313.1;Parent=Phyra72313;constitutive=1;rank=1 scaffold_153 . repeat_region 2745 30988 . ? . description=dust scaffold_153 . biological_region 36106 36109 0.999 + . logic_name=eponine scaffold_153 . repeat_region 36692 36711 . ? . description=trf scaffold_153 . repeat_region 36714 36741 . ? . description=trf scaffold_153 . repeat_region 38254 42938 . - . description=GypsyPi-1c_I-int scaffold_153 . biological_region 39315 39320 0.999 + . logic_name=eponine scaffold_153 ensembl protein_coding_gene 31317 34415 . - . ID=Phyra85215;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_153000002;logic_name=jgi_phyra1 scaffold_153 ensembl transcript 31317 34415 . - . ID=Phyra85215;Parent=Phyra85215;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_153 . CDS 31317 31628 . - 0 ID=Phyra85215;Parent=Phyra85215;rank=5 scaffold_153 . exon 31317 31628 . - . ID=Phyra85215.5;Parent=Phyra85215;constitutive=1;rank=5 scaffold_153 . CDS 31757 32293 . - 0 ID=Phyra85215;Parent=Phyra85215;rank=4 scaffold_153 . exon 31757 32293 . - . ID=Phyra85215.4;Parent=Phyra85215;constitutive=1;rank=4 scaffold_153 . CDS 32359 33153 . - 0 ID=Phyra85215;Parent=Phyra85215;rank=3 scaffold_153 . exon 32359 33153 . - . ID=Phyra85215.3;Parent=Phyra85215;constitutive=1;rank=3 scaffold_153 . CDS 33699 34116 . - 0 ID=Phyra85215;Parent=Phyra85215;rank=2 scaffold_153 . exon 33699 34116 . - . ID=Phyra85215.2;Parent=Phyra85215;constitutive=1;ensembl_phase=2;rank=2 scaffold_153 . CDS 34159 34415 . - 0 ID=Phyra85215;Parent=Phyra85215;rank=1 scaffold_153 . exon 34159 34415 . - . ID=Phyra85215.1;Parent=Phyra85215;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_153 ensembl protein_coding_gene 38120 41766 . - . ID=Phyra85216;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_153000003;logic_name=jgi_phyra1 scaffold_153 ensembl transcript 38120 41766 . - . ID=Phyra85216;Parent=Phyra85216;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_153 . CDS 38120 40191 . - 0 ID=Phyra85216;Parent=Phyra85216;rank=4 scaffold_153 . exon 38120 40191 . - . ID=Phyra85216.4;Parent=Phyra85216;constitutive=1;ensembl_phase=1;rank=4 scaffold_153 . CDS 40384 40729 . - 0 ID=Phyra85216;Parent=Phyra85216;rank=3 scaffold_153 . CDS 40948 41277 . - 0 ID=Phyra85216;Parent=Phyra85216;rank=2 scaffold_153 . CDS 41524 41766 . - 0 ID=Phyra85216;Parent=Phyra85216;rank=1 scaffold_153 . repeat_region 41511 41518 . ? . description=dust scaffold_153 . repeat_region 44740 44889 . ? . description=dust scaffold_153 . repeat_region 44740 44889 . + . description=(CAGA)n scaffold_153 . repeat_region 46900 46911 . ? . description=dust scaffold_153 ensembl tRNA_gene 46829 46899 . - . ID=EPrPRAG00000000050;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_153 ensembl transcript 46829 46899 . - . ID=EPrPRAT00000000050;Parent=EPrPRAG00000000050;biotype=tRNA;logic_name=ncrna_eg scaffold_153 . exon 46829 46899 . - . ID=EPrPRAE00000000050;Parent=EPrPRAT00000000050;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_153 . exon 40384 40729 . - . ID=Phyra85216.3;Parent=Phyra85216;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_153 . exon 40948 41277 . - . ID=Phyra85216.2;Parent=Phyra85216;constitutive=1;rank=2 scaffold_153 . exon 41524 41766 . - . ID=Phyra85216.1;Parent=Phyra85216;constitutive=1;rank=1 scaffold_153 . repeat_region 53955 53991 . ? . description=trf scaffold_153 . repeat_region 57894 57950 . ? . description=trf scaffold_153 . repeat_region 57907 57950 . ? . description=trf scaffold_153 . biological_region 59036 59038 0.999 - . logic_name=eponine scaffold_153 . repeat_region 59152 59188 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_149 1 60000 scaffold_149 . repeat_region 750 6128 . ? . description=dust scaffold_149 . repeat_region 6560 6610 . ? . description=trf scaffold_149 . biological_region 7411 7411 0.999 - . logic_name=eponine scaffold_149 ensembl tRNA_gene 6459 6531 . - . ID=EPrPRAG00000000112;biotype=tRNA;description=tRNA-Val for anticodon UAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_149 ensembl transcript 6459 6531 . - . ID=EPrPRAT00000000112;Parent=EPrPRAG00000000112;biotype=tRNA;logic_name=ncrna_eg scaffold_149 . exon 6459 6531 . - . ID=EPrPRAE00000000112;Parent=EPrPRAT00000000112;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_149 ensembl protein_coding_gene 9560 10096 . + . ID=Phyra85165;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_149000001;logic_name=jgi_phyra1 scaffold_149 ensembl transcript 9560 10096 . + . ID=Phyra85165;Parent=Phyra85165;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_149 . CDS 9560 10096 . + 0 ID=Phyra85165;Parent=Phyra85165;rank=1 scaffold_149 . exon 9560 10096 . + . ID=Phyra85165.1;Parent=Phyra85165;constitutive=1;rank=1 scaffold_149 ensembl protein_coding_gene 10478 12465 . - . ID=Phyra85166;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_149000002;logic_name=jgi_phyra1 scaffold_149 ensembl transcript 10478 12465 . - . ID=Phyra85166;Parent=Phyra85166;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_149 . CDS 10478 11845 . - 0 ID=Phyra85166;Parent=Phyra85166;rank=3 scaffold_149 . exon 10478 11845 . - . ID=Phyra85166.3;Parent=Phyra85166;constitutive=1;rank=3 scaffold_149 . CDS 11918 12211 . - 0 ID=Phyra85166;Parent=Phyra85166;rank=2 scaffold_149 . exon 11918 12211 . - . ID=Phyra85166.2;Parent=Phyra85166;constitutive=1;rank=2 scaffold_149 . CDS 12325 12465 . - 0 ID=Phyra85166;Parent=Phyra85166;rank=1 scaffold_149 . exon 12325 12465 . - . ID=Phyra85166.1;Parent=Phyra85166;constitutive=1;rank=1 scaffold_149 ensembl protein_coding_gene 16509 16928 . - . ID=Phyra85167;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_149000003;logic_name=jgi_phyra1 scaffold_149 ensembl transcript 16509 16928 . - . ID=Phyra85167;Parent=Phyra85167;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_149 . CDS 16509 16928 . - 0 ID=Phyra85167;Parent=Phyra85167;rank=1 scaffold_149 . exon 16509 16928 . - . ID=Phyra85167.1;Parent=Phyra85167;constitutive=1;rank=1 scaffold_149 ensembl protein_coding_gene 17082 18059 . + . ID=Phyra85168;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_149000004;logic_name=jgi_phyra1 scaffold_149 ensembl transcript 17082 18059 . + . ID=Phyra85168;Parent=Phyra85168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_149 . CDS 17082 17401 . + 0 ID=Phyra85168;Parent=Phyra85168;rank=1 scaffold_149 . exon 17082 17401 . + . ID=Phyra85168.1;Parent=Phyra85168;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_149 . CDS 17475 17919 . + 0 ID=Phyra85168;Parent=Phyra85168;rank=2 scaffold_149 . exon 17475 17919 . + . ID=Phyra85168.2;Parent=Phyra85168;constitutive=1;ensembl_phase=2;rank=2 scaffold_149 . CDS 17994 18059 . + 0 ID=Phyra85168;Parent=Phyra85168;rank=3 scaffold_149 . exon 17994 18059 . + . ID=Phyra85168.3;Parent=Phyra85168;constitutive=1;rank=3 scaffold_149 ensembl protein_coding_gene 18468 20144 . + . ID=Phyra85169;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_149000005;logic_name=jgi_phyra1 scaffold_149 ensembl transcript 18468 20144 . + . ID=Phyra85169;Parent=Phyra85169;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_149 . CDS 18468 18539 . + 0 ID=Phyra85169;Parent=Phyra85169;rank=1 scaffold_149 . exon 18468 18539 . + . ID=Phyra85169.1;Parent=Phyra85169;constitutive=1;rank=1 scaffold_149 . CDS 18613 19149 . + 0 ID=Phyra85169;Parent=Phyra85169;rank=2 scaffold_149 . exon 18613 19149 . + . ID=Phyra85169.2;Parent=Phyra85169;constitutive=1;rank=2 scaffold_149 . CDS 19219 19263 . + 0 ID=Phyra85169;Parent=Phyra85169;rank=3 scaffold_149 . exon 19219 19263 . + . ID=Phyra85169.3;Parent=Phyra85169;constitutive=1;rank=3 scaffold_149 . CDS 19603 20015 . + 0 ID=Phyra85169;Parent=Phyra85169;rank=4 scaffold_149 . exon 19603 20015 . + . ID=Phyra85169.4;Parent=Phyra85169;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_149 . CDS 20105 20144 . + 0 ID=Phyra85169;Parent=Phyra85169;rank=5 scaffold_149 . repeat_region 28408 28416 . ? . description=dust scaffold_149 . biological_region 29642 29644 0.999 - . logic_name=eponine scaffold_149 ensembl protein_coding_gene 23377 24093 . + . ID=Phyra72306;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_149000001;logic_name=jgi_phyra1 scaffold_149 ensembl transcript 23377 24093 . + . ID=Phyra72306;Parent=Phyra72306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_149 . CDS 23377 24093 . + 0 ID=Phyra72306;Parent=Phyra72306;rank=1 scaffold_149 . exon 23377 24093 . + . ID=Phyra72306.1;Parent=Phyra72306;constitutive=1;rank=1 scaffold_149 . exon 20105 20144 . + . ID=Phyra85169.5;Parent=Phyra85169;constitutive=1;ensembl_phase=2;rank=5 scaffold_149 ensembl protein_coding_gene 21697 23154 . + . ID=Phyra85170;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_149000006;logic_name=jgi_phyra1 scaffold_149 ensembl transcript 21697 23154 . + . ID=Phyra85170;Parent=Phyra85170;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_149 . CDS 21697 23154 . + 0 ID=Phyra85170;Parent=Phyra85170;rank=1 scaffold_149 . exon 21697 23154 . + . ID=Phyra85170.1;Parent=Phyra85170;constitutive=1;rank=1 scaffold_149 ensembl protein_coding_gene 25022 26901 . + . ID=Phyra85172;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_149000008;logic_name=jgi_phyra1 scaffold_149 ensembl transcript 25022 26901 . + . ID=Phyra85172;Parent=Phyra85172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_149 . CDS 25022 26796 . + 0 ID=Phyra85172;Parent=Phyra85172;rank=1 scaffold_149 . exon 25022 26796 . + . ID=Phyra85172.1;Parent=Phyra85172;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_149 . CDS 26883 26901 . + 0 ID=Phyra85172;Parent=Phyra85172;rank=2 scaffold_149 . exon 26883 26901 . + . ID=Phyra85172.2;Parent=Phyra85172;constitutive=1;ensembl_phase=2;rank=2 scaffold_149 ensembl protein_coding_gene 28097 28634 . + . ID=Phyra85173;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_149000009;logic_name=jgi_phyra1 scaffold_149 ensembl transcript 28097 28634 . + . ID=Phyra85173;Parent=Phyra85173;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_149 . CDS 28097 28431 . + 0 ID=Phyra85173;Parent=Phyra85173;rank=1 scaffold_149 . exon 28097 28431 . + . ID=Phyra85173.1;Parent=Phyra85173;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_149 . CDS 28529 28634 . + 0 ID=Phyra85173;Parent=Phyra85173;rank=2 scaffold_149 . exon 28529 28634 . + . ID=Phyra85173.2;Parent=Phyra85173;constitutive=1;ensembl_phase=2;rank=2 scaffold_149 . repeat_region 33349 33997 . ? . description=trf scaffold_149 . repeat_region 33394 33427 . ? . description=trf scaffold_149 . repeat_region 33985 34028 . ? . description=trf scaffold_149 . repeat_region 34063 34859 . ? . description=trf scaffold_149 ensembl protein_coding_gene 30340 31926 . + . ID=Phyra85174;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_149000010;logic_name=jgi_phyra1 scaffold_149 ensembl transcript 30340 31926 . + . ID=Phyra85174;Parent=Phyra85174;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_149 . CDS 30340 31926 . + 0 ID=Phyra85174;Parent=Phyra85174;rank=1 scaffold_149 . exon 30340 31926 . + . ID=Phyra85174.1;Parent=Phyra85174;constitutive=1;rank=1 scaffold_149 ensembl protein_coding_gene 33334 34734 . - . ID=Phyra85175;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_149000011;logic_name=jgi_phyra1 scaffold_149 ensembl transcript 33334 34734 . - . ID=Phyra85175;Parent=Phyra85175;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_149 . CDS 33334 34734 . - 0 ID=Phyra85175;Parent=Phyra85175;rank=1 scaffold_149 . exon 33334 34734 . - . ID=Phyra85175.1;Parent=Phyra85175;constitutive=1;rank=1 scaffold_149 . repeat_region 34860 49319 . ? . description=dust scaffold_149 . biological_region 49605 49607 0.999 + . logic_name=eponine scaffold_149 . biological_region 49694 49698 0.999 + . logic_name=eponine scaffold_149 . biological_region 49707 49716 0.999 - . logic_name=eponine scaffold_149 . repeat_region 50152 50294 . + . description=GypsyPi-1c_LTR scaffold_149 . repeat_region 58911 60000 . ? . description=trf scaffold_149 . repeat_region 58947 60000 . ? . description=trf scaffold_149 ensembl protein_coding_gene 53807 57387 . - . ID=Phyra85176;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_149000012;logic_name=jgi_phyra1 scaffold_149 ensembl transcript 53807 57387 . - . ID=Phyra85176;Parent=Phyra85176;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_149 . CDS 53807 55579 . - 0 ID=Phyra85176;Parent=Phyra85176;rank=2 scaffold_149 . exon 53807 55579 . - . ID=Phyra85176.2;Parent=Phyra85176;constitutive=1;rank=2 scaffold_149 . CDS 55828 57387 . - 0 ID=Phyra85176;Parent=Phyra85176;rank=1 scaffold_149 . exon 55828 57387 . - . ID=Phyra85176.1;Parent=Phyra85176;constitutive=1;rank=1 scaffold_149 ensembl protein_coding_gene 58381 59964 . + . ID=Phyra85177;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_149000013;logic_name=jgi_phyra1 scaffold_149 ensembl transcript 58381 59964 . + . ID=Phyra85177;Parent=Phyra85177;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_149 . CDS 58381 59964 . + 0 ID=Phyra85177;Parent=Phyra85177;rank=1 scaffold_149 . exon 58381 59964 . + . ID=Phyra85177.1;Parent=Phyra85177;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_152 1 60096 scaffold_152 . repeat_region 1 482 . + . description=GypsyPi-1c_I-int scaffold_152 . repeat_region 794 1015 . + . description=GypsyPi-1c_I-int scaffold_152 . biological_region 1032 1035 0.999 - . logic_name=eponine scaffold_152 . biological_region 1090 1091 0.999 - . logic_name=eponine scaffold_152 . biological_region 1953 1954 0.999 + . logic_name=eponine scaffold_152 . biological_region 2137 2139 0.999 + . logic_name=eponine scaffold_152 . repeat_region 4965 5368 . ? . description=dust scaffold_152 . repeat_region 5515 6909 . - . description=Gypsy-1-I_PI-int scaffold_152 . repeat_region 7033 10183 . ? . description=dust scaffold_152 ensembl protein_coding_gene 1032 2566 . - . ID=Phyra85208;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_152000001;logic_name=jgi_phyra1 scaffold_152 ensembl transcript 1032 2566 . - . ID=Phyra85208;Parent=Phyra85208;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_152 . CDS 1032 1289 . - 0 ID=Phyra85208;Parent=Phyra85208;rank=5 scaffold_152 . exon 1032 1289 . - . ID=Phyra85208.5;Parent=Phyra85208;constitutive=1;rank=5 scaffold_152 . CDS 1463 1638 . - 0 ID=Phyra85208;Parent=Phyra85208;rank=4 scaffold_152 . exon 1463 1638 . - . ID=Phyra85208.4;Parent=Phyra85208;constitutive=1;ensembl_phase=1;rank=4 scaffold_152 . CDS 1663 1680 . - 0 ID=Phyra85208;Parent=Phyra85208;rank=3 scaffold_152 . exon 1663 1680 . - . ID=Phyra85208.3;Parent=Phyra85208;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_152 . CDS 1735 2394 . - 0 ID=Phyra85208;Parent=Phyra85208;rank=2 scaffold_152 . exon 1735 2394 . - . ID=Phyra85208.2;Parent=Phyra85208;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_152 . CDS 2461 2566 . - 0 ID=Phyra85208;Parent=Phyra85208;rank=1 scaffold_152 . exon 2461 2566 . - . ID=Phyra85208.1;Parent=Phyra85208;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_152 . repeat_region 10233 10289 . ? . description=trf scaffold_152 ensembl protein_coding_gene 10983 14141 . + . ID=Phyra85209;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_152000002;logic_name=jgi_phyra1 scaffold_152 ensembl transcript 10983 14141 . + . ID=Phyra85209;Parent=Phyra85209;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_152 . CDS 10983 12063 . + 0 ID=Phyra85209;Parent=Phyra85209;rank=1 scaffold_152 . exon 10983 12063 . + . ID=Phyra85209.1;Parent=Phyra85209;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_152 . CDS 12643 14141 . + 0 ID=Phyra85209;Parent=Phyra85209;rank=2 scaffold_152 . exon 12643 14141 . + . ID=Phyra85209.2;Parent=Phyra85209;constitutive=1;ensembl_phase=1;rank=2 scaffold_152 ensembl protein_coding_gene 16345 19461 . - . ID=Phyra85210;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_152000003;logic_name=jgi_phyra1 scaffold_152 ensembl transcript 16345 19461 . - . ID=Phyra85210;Parent=Phyra85210;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_152 . CDS 16345 17349 . - 0 ID=Phyra85210;Parent=Phyra85210;rank=3 scaffold_152 . exon 16345 17349 . - . ID=Phyra85210.3;Parent=Phyra85210;constitutive=1;rank=3 scaffold_152 . CDS 17461 17935 . - 0 ID=Phyra85210;Parent=Phyra85210;rank=2 scaffold_152 . CDS 17993 19461 . - 0 ID=Phyra85210;Parent=Phyra85210;rank=1 scaffold_152 . repeat_region 22228 22354 . ? . description=dust scaffold_152 . repeat_region 23951 24000 . ? . description=dust scaffold_152 . repeat_region 24277 25468 . - . description=Gypsy-1-I_PI-int scaffold_152 . exon 17461 17935 . - . ID=Phyra85210.2;Parent=Phyra85210;constitutive=1;ensembl_phase=2;rank=2 scaffold_152 . exon 17993 19461 . - . ID=Phyra85210.1;Parent=Phyra85210;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_152 ensembl protein_coding_gene 20441 22076 . - . ID=Phyra85211;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_152000004;logic_name=jgi_phyra1 scaffold_152 ensembl transcript 20441 22076 . - . ID=Phyra85211;Parent=Phyra85211;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_152 . CDS 20441 21095 . - 0 ID=Phyra85211;Parent=Phyra85211;rank=2 scaffold_152 . exon 20441 21095 . - . ID=Phyra85211.2;Parent=Phyra85211;constitutive=1;ensembl_phase=2;rank=2 scaffold_152 . CDS 21175 22076 . - 0 ID=Phyra85211;Parent=Phyra85211;rank=1 scaffold_152 . exon 21175 22076 . - . ID=Phyra85211.1;Parent=Phyra85211;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_152 . repeat_region 27524 27580 . ? . description=trf scaffold_152 . repeat_region 29164 29201 . ? . description=trf scaffold_152 . repeat_region 30187 30215 . ? . description=trf scaffold_152 ensembl protein_coding_gene 31507 32214 . - . ID=Phyra85212;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_152000005;logic_name=jgi_phyra1 scaffold_152 ensembl transcript 31507 32214 . - . ID=Phyra85212;Parent=Phyra85212;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_152 . CDS 31507 31898 . - 0 ID=Phyra85212;Parent=Phyra85212;rank=2 scaffold_152 . exon 31507 31898 . - . ID=Phyra85212.2;Parent=Phyra85212;constitutive=1;ensembl_phase=1;rank=2 scaffold_152 . CDS 32169 32214 . - 0 ID=Phyra85212;Parent=Phyra85212;rank=1 scaffold_152 . exon 32169 32214 . - . ID=Phyra85212.1;Parent=Phyra85212;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_152 . repeat_region 35400 53200 . ? . description=dust scaffold_152 . repeat_region 35400 53200 . ? . description=dust scaffold_152 . repeat_region 53575 54406 . + . description=GypsyPi-1c_I-int scaffold_152 . repeat_region 54399 54503 . - . description=GypsyPi-1c_LTR scaffold_152 . repeat_region 55068 55100 . ? . description=trf scaffold_152 . repeat_region 55208 55296 . ? . description=trf scaffold_152 . repeat_region 55364 55422 . ? . description=trf scaffold_152 . repeat_region 55695 56078 . - . description=GypsyPi-1c_I-int scaffold_152 . biological_region 55972 55974 0.999 + . logic_name=eponine scaffold_152 . repeat_region 56292 57853 . - . description=GypsyPi-1c_I-int scaffold_152 . repeat_region 56526 56537 . ? . description=dust scaffold_152 . repeat_region 58824 58870 . ? . description=dust scaffold_152 . repeat_region 58826 58853 . ? . description=trf scaffold_152 . biological_region 58965 58966 0.999 - . logic_name=eponine scaffold_152 . biological_region 59803 59806 0.999 + . logic_name=eponine scaffold_152 ensembl protein_coding_gene 58853 60051 . + . ID=Phyra85213;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_152000006;logic_name=jgi_phyra1 scaffold_152 ensembl transcript 58853 60051 . + . ID=Phyra85213;Parent=Phyra85213;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_152 . CDS 58853 60051 . + 0 ID=Phyra85213;Parent=Phyra85213;rank=1 scaffold_152 . exon 58853 60051 . + . ID=Phyra85213.1;Parent=Phyra85213;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_151 1 62108 scaffold_151 . biological_region 998 1002 0.999 + . logic_name=eponine scaffold_151 . biological_region 1035 1037 0.999 - . logic_name=eponine scaffold_151 . repeat_region 3349 3758 . ? . description=trf scaffold_151 . repeat_region 3353 3758 . ? . description=dust scaffold_151 . repeat_region 3355 3534 . + . description=(CAGA)n scaffold_151 . repeat_region 3551 3753 . + . description=(CAGA)n scaffold_151 . repeat_region 4039 4047 . ? . description=dust scaffold_151 . biological_region 5877 5883 0.999 - . logic_name=eponine scaffold_151 . biological_region 5971 5976 0.999 - . logic_name=eponine scaffold_151 . repeat_region 6039 6088 . ? . description=dust scaffold_151 . repeat_region 6345 6623 . - . description=GypsyPi-1c_I-int scaffold_151 . repeat_region 6941 9182 . - . description=GypsyPi-1c_I-int scaffold_151 ensembl protein_coding_gene 2518 2697 . + . ID=Phyra42137;biotype=protein_coding;external_name=gwEuk.151.6.1;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 2518 2697 . + . ID=Phyra42137;Parent=Phyra42137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 2518 2697 . + 0 ID=Phyra42137;Parent=Phyra42137;rank=1 scaffold_151 . exon 2518 2697 . + . ID=Phyra42137.1;Parent=Phyra42137;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 1463 2437 . + . ID=Phyra72307;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_151000001;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 1463 2437 . + . ID=Phyra72307;Parent=Phyra72307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 1463 2437 . + 0 ID=Phyra72307;Parent=Phyra72307;rank=1 scaffold_151 . exon 1463 2437 . + . ID=Phyra72307.1;Parent=Phyra72307;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 140 1329 . + . ID=Phyra85184;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_151000001;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 140 1329 . + . ID=Phyra85184;Parent=Phyra85184;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 140 407 . + 0 ID=Phyra85184;Parent=Phyra85184;rank=1 scaffold_151 . exon 140 407 . + . ID=Phyra85184.1;Parent=Phyra85184;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_151 . CDS 434 982 . + 0 ID=Phyra85184;Parent=Phyra85184;rank=2 scaffold_151 . exon 434 982 . + . ID=Phyra85184.2;Parent=Phyra85184;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_151 . CDS 1134 1329 . + 0 ID=Phyra85184;Parent=Phyra85184;rank=3 scaffold_151 . exon 1134 1329 . + . ID=Phyra85184.3;Parent=Phyra85184;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_151 ensembl protein_coding_gene 5403 6328 . + . ID=Phyra85186;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_151000003;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 5403 6328 . + . ID=Phyra85186;Parent=Phyra85186;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 5403 6029 . + 0 ID=Phyra85186;Parent=Phyra85186;rank=1 scaffold_151 . exon 5403 6029 . + . ID=Phyra85186.1;Parent=Phyra85186;constitutive=1;rank=1 scaffold_151 . CDS 6131 6328 . + 0 ID=Phyra85186;Parent=Phyra85186;rank=2 scaffold_151 . exon 6131 6328 . + . ID=Phyra85186.2;Parent=Phyra85186;constitutive=1;rank=2 scaffold_151 ensembl protein_coding_gene 8400 11665 . - . ID=Phyra85187;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_151000004;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 8400 11665 . - . ID=Phyra85187;Parent=Phyra85187;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 8400 10316 . - 0 ID=Phyra85187;Parent=Phyra85187;rank=3 scaffold_151 . exon 8400 10316 . - . ID=Phyra85187.3;Parent=Phyra85187;constitutive=1;rank=3 scaffold_151 . CDS 10518 10661 . - 0 ID=Phyra85187;Parent=Phyra85187;rank=2 scaffold_151 . CDS 10784 11665 . - 0 ID=Phyra85187;Parent=Phyra85187;rank=1 scaffold_151 ensembl protein_coding_gene 15969 16991 . - . ID=Phyra42145;biotype=protein_coding;external_name=gwEuk.151.14.1;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 15969 16991 . - . ID=Phyra42145;Parent=Phyra42145;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 15969 16358 . - 0 ID=Phyra42145;Parent=Phyra42145;rank=3 scaffold_151 . exon 15969 16358 . - . ID=Phyra42145.3;Parent=Phyra42145;constitutive=1;rank=3 scaffold_151 . CDS 16439 16687 . - 0 ID=Phyra42145;Parent=Phyra42145;rank=2 scaffold_151 . exon 16439 16687 . - . ID=Phyra42145.2;Parent=Phyra42145;constitutive=1;rank=2 scaffold_151 . CDS 16749 16991 . - 0 ID=Phyra42145;Parent=Phyra42145;rank=1 scaffold_151 . exon 16749 16991 . - . ID=Phyra42145.1;Parent=Phyra42145;constitutive=1;rank=1 scaffold_151 . exon 10518 10661 . - . ID=Phyra85187.2;Parent=Phyra85187;constitutive=1;rank=2 scaffold_151 . exon 10784 11665 . - . ID=Phyra85187.1;Parent=Phyra85187;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 12432 13280 . - . ID=Phyra85188;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_151000005;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 12432 13280 . - . ID=Phyra85188;Parent=Phyra85188;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 12432 13280 . - 0 ID=Phyra85188;Parent=Phyra85188;rank=1 scaffold_151 . exon 12432 13280 . - . ID=Phyra85188.1;Parent=Phyra85188;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 13893 15107 . - . ID=Phyra85189;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_151000006;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 13893 15107 . - . ID=Phyra85189;Parent=Phyra85189;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 13893 15107 . - 0 ID=Phyra85189;Parent=Phyra85189;rank=1 scaffold_151 . exon 13893 15107 . - . ID=Phyra85189.1;Parent=Phyra85189;constitutive=1;rank=1 scaffold_151 . biological_region 18021 18024 0.999 - . logic_name=eponine scaffold_151 . biological_region 19612 19617 0.999 - . logic_name=eponine scaffold_151 . repeat_region 19648 19664 . ? . description=dust scaffold_151 . biological_region 21791 21792 0.999 + . logic_name=eponine scaffold_151 . repeat_region 21806 21853 . + . description=(CGGA)n scaffold_151 . repeat_region 21809 21853 . ? . description=dust scaffold_151 . repeat_region 21816 21853 . ? . description=trf scaffold_151 . repeat_region 21816 22570 . ? . description=trf scaffold_151 . biological_region 22098 22100 0.999 + . logic_name=eponine scaffold_151 . biological_region 22143 22148 0.999 + . logic_name=eponine scaffold_151 . repeat_region 22160 22222 . + . description=(CGGA)n scaffold_151 . repeat_region 22163 22220 . ? . description=dust scaffold_151 . repeat_region 22170 22220 . ? . description=trf scaffold_151 . repeat_region 22533 22570 . ? . description=dust scaffold_151 . repeat_region 22540 22570 . ? . description=trf scaffold_151 . repeat_region 26429 26438 . ? . description=dust scaffold_151 . repeat_region 26530 26598 . ? . description=trf scaffold_151 ensembl protein_coding_gene 22658 23011 . + . ID=Phyra42148;biotype=protein_coding;external_name=gwEuk.151.17.1;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 22658 23011 . + . ID=Phyra42148;Parent=Phyra42148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 22658 23011 . + 0 ID=Phyra42148;Parent=Phyra42148;rank=1 scaffold_151 . exon 22658 23011 . + . ID=Phyra42148.1;Parent=Phyra42148;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 20503 20946 . - . ID=Phyra72309;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_151000003;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 20503 20946 . - . ID=Phyra72309;Parent=Phyra72309;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 20503 20946 . - 0 ID=Phyra72309;Parent=Phyra72309;rank=1 scaffold_151 . exon 20503 20946 . - . ID=Phyra72309.1;Parent=Phyra72309;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 17808 19068 . - . ID=Phyra85192;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_151000009;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 17808 19068 . - . ID=Phyra85192;Parent=Phyra85192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 17808 18219 . - 0 ID=Phyra85192;Parent=Phyra85192;rank=6 scaffold_151 . exon 17808 18219 . - . ID=Phyra85192.6;Parent=Phyra85192;constitutive=1;ensembl_phase=2;rank=6 scaffold_151 . CDS 18281 18313 . - 0 ID=Phyra85192;Parent=Phyra85192;rank=5 scaffold_151 . exon 18281 18313 . - . ID=Phyra85192.5;Parent=Phyra85192;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_151 . CDS 18335 18456 . - 0 ID=Phyra85192;Parent=Phyra85192;rank=4 scaffold_151 . exon 18335 18456 . - . ID=Phyra85192.4;Parent=Phyra85192;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_151 . CDS 18559 18652 . - 0 ID=Phyra85192;Parent=Phyra85192;rank=3 scaffold_151 . exon 18559 18652 . - . ID=Phyra85192.3;Parent=Phyra85192;constitutive=1;ensembl_phase=2;rank=3 scaffold_151 . CDS 18754 18854 . - 0 ID=Phyra85192;Parent=Phyra85192;rank=2 scaffold_151 . exon 18754 18854 . - . ID=Phyra85192.2;Parent=Phyra85192;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_151 . CDS 18949 19068 . - 0 ID=Phyra85192;Parent=Phyra85192;rank=1 scaffold_151 . exon 18949 19068 . - . ID=Phyra85192.1;Parent=Phyra85192;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 29365 29890 . + . ID=Phyra42150;biotype=protein_coding;external_name=gwEuk.151.19.1;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 29365 29890 . + . ID=Phyra42150;Parent=Phyra42150;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 29365 29890 . + 0 ID=Phyra42150;Parent=Phyra42150;rank=1 scaffold_151 . exon 29365 29890 . + . ID=Phyra42150.1;Parent=Phyra42150;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_151 ensembl protein_coding_gene 26812 28683 . - . ID=Phyra85194;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_151000011;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 26812 28683 . - . ID=Phyra85194;Parent=Phyra85194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 26812 26938 . - 0 ID=Phyra85194;Parent=Phyra85194;rank=6 scaffold_151 . exon 26812 26938 . - . ID=Phyra85194.6;Parent=Phyra85194;constitutive=1;ensembl_phase=2;rank=6 scaffold_151 . CDS 26974 27525 . - 0 ID=Phyra85194;Parent=Phyra85194;rank=5 scaffold_151 . exon 26974 27525 . - . ID=Phyra85194.5;Parent=Phyra85194;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_151 . CDS 27708 27871 . - 0 ID=Phyra85194;Parent=Phyra85194;rank=4 scaffold_151 . exon 27708 27871 . - . ID=Phyra85194.4;Parent=Phyra85194;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_151 . CDS 27956 28219 . - 0 ID=Phyra85194;Parent=Phyra85194;rank=3 scaffold_151 . exon 27956 28219 . - . ID=Phyra85194.3;Parent=Phyra85194;constitutive=1;rank=3 scaffold_151 . CDS 28275 28359 . - 0 ID=Phyra85194;Parent=Phyra85194;rank=2 scaffold_151 . exon 28275 28359 . - . ID=Phyra85194.2;Parent=Phyra85194;constitutive=1;ensembl_phase=2;rank=2 scaffold_151 . CDS 28457 28683 . - 0 ID=Phyra85194;Parent=Phyra85194;rank=1 scaffold_151 . exon 28457 28683 . - . ID=Phyra85194.1;Parent=Phyra85194;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_151 ensembl protein_coding_gene 31604 32269 . - . ID=Phyra85196;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_151000013;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 31604 32269 . - . ID=Phyra85196;Parent=Phyra85196;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 31604 31867 . - 0 ID=Phyra85196;Parent=Phyra85196;rank=3 scaffold_151 . exon 31604 31867 . - . ID=Phyra85196.3;Parent=Phyra85196;constitutive=1;rank=3 scaffold_151 . CDS 31918 32106 . - 0 ID=Phyra85196;Parent=Phyra85196;rank=2 scaffold_151 . exon 31918 32106 . - . ID=Phyra85196.2;Parent=Phyra85196;constitutive=1;rank=2 scaffold_151 . CDS 32183 32269 . - 0 ID=Phyra85196;Parent=Phyra85196;rank=1 scaffold_151 . exon 32183 32269 . - . ID=Phyra85196.1;Parent=Phyra85196;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 32792 33350 . - . ID=Phyra85197;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_151000014;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 32792 33350 . - . ID=Phyra85197;Parent=Phyra85197;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 32792 33223 . - 0 ID=Phyra85197;Parent=Phyra85197;rank=2 scaffold_151 . exon 32792 33223 . - . ID=Phyra85197.2;Parent=Phyra85197;constitutive=1;rank=2 scaffold_151 . CDS 33288 33350 . - 0 ID=Phyra85197;Parent=Phyra85197;rank=1 scaffold_151 . exon 33288 33350 . - . ID=Phyra85197.1;Parent=Phyra85197;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 33532 34397 . + . ID=Phyra85198;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_151000015;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 33532 34397 . + . ID=Phyra85198;Parent=Phyra85198;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 33532 33898 . + 0 ID=Phyra85198;Parent=Phyra85198;rank=1 scaffold_151 . exon 33532 33898 . + . ID=Phyra85198.1;Parent=Phyra85198;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_151 . CDS 33976 34397 . + 0 ID=Phyra85198;Parent=Phyra85198;rank=2 scaffold_151 . exon 33976 34397 . + . ID=Phyra85198.2;Parent=Phyra85198;constitutive=1;ensembl_phase=1;rank=2 scaffold_151 ensembl protein_coding_gene 30338 31519 . + . ID=Phyra97064;biotype=protein_coding;external_name=C_scaffold_151000002;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 30338 31519 . + . ID=Phyra97064;Parent=Phyra97064;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 30338 30399 . + 0 ID=Phyra97064;Parent=Phyra97064;rank=1 scaffold_151 . exon 30338 30399 . + . ID=Phyra97064.1;Parent=Phyra97064;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_151 . CDS 30453 30604 . + 0 ID=Phyra97064;Parent=Phyra97064;rank=2 scaffold_151 . exon 30453 30604 . + . ID=Phyra97064.2;Parent=Phyra97064;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_151 . CDS 30667 30765 . + 0 ID=Phyra97064;Parent=Phyra97064;rank=3 scaffold_151 . exon 30667 30765 . + . ID=Phyra97064.3;Parent=Phyra97064;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_151 . CDS 31188 31519 . + 0 ID=Phyra97064;Parent=Phyra97064;rank=4 scaffold_151 . exon 31188 31519 . + . ID=Phyra97064.4;Parent=Phyra97064;constitutive=1;ensembl_phase=1;rank=4 scaffold_151 ensembl protein_coding_gene 35129 40232 . - . ID=Phyra97068;biotype=protein_coding;external_name=C_scaffold_151000006;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 35129 40232 . - . ID=Phyra97068;Parent=Phyra97068;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 35129 35146 . - 0 ID=Phyra97068;Parent=Phyra97068;rank=8 scaffold_151 . exon 35129 35146 . - . ID=Phyra97068.8;Parent=Phyra97068;constitutive=1;rank=8 scaffold_151 . CDS 35202 35416 . - 0 ID=Phyra97068;Parent=Phyra97068;rank=7 scaffold_151 . exon 35202 35416 . - . ID=Phyra97068.7;Parent=Phyra97068;constitutive=1;ensembl_phase=1;rank=7 scaffold_151 . CDS 35564 36038 . - 0 ID=Phyra97068;Parent=Phyra97068;rank=6 scaffold_151 . CDS 36207 36490 . - 0 ID=Phyra97068;Parent=Phyra97068;rank=5 scaffold_151 . CDS 36662 37686 . - 0 ID=Phyra97068;Parent=Phyra97068;rank=4 scaffold_151 . CDS 37720 39457 . - 0 ID=Phyra97068;Parent=Phyra97068;rank=3 scaffold_151 . CDS 39488 40067 . - 0 ID=Phyra97068;Parent=Phyra97068;rank=2 scaffold_151 . CDS 40101 40232 . - 0 ID=Phyra97068;Parent=Phyra97068;rank=1 scaffold_151 . biological_region 36720 36724 0.999 - . logic_name=eponine scaffold_151 . exon 35564 36038 . - . ID=Phyra97068.6;Parent=Phyra97068;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_151 . exon 36207 36490 . - . ID=Phyra97068.5;Parent=Phyra97068;constitutive=1;ensembl_phase=1;rank=5 scaffold_151 . exon 36662 37686 . - . ID=Phyra97068.4;Parent=Phyra97068;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_151 . exon 37720 39457 . - . ID=Phyra97068.3;Parent=Phyra97068;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_151 . exon 39488 40067 . - . ID=Phyra97068.2;Parent=Phyra97068;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_151 . exon 40101 40232 . - . ID=Phyra97068.1;Parent=Phyra97068;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 40577 41735 . + . ID=Phyra97070;biotype=protein_coding;external_name=C_scaffold_151000008;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 40577 41735 . + . ID=Phyra97070;Parent=Phyra97070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 40577 40601 . + 0 ID=Phyra97070;Parent=Phyra97070;rank=1 scaffold_151 . exon 40577 40601 . + . ID=Phyra97070.1;Parent=Phyra97070;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_151 . CDS 40657 40777 . + 0 ID=Phyra97070;Parent=Phyra97070;rank=2 scaffold_151 . exon 40657 40777 . + . ID=Phyra97070.2;Parent=Phyra97070;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_151 . CDS 40892 41106 . + 0 ID=Phyra97070;Parent=Phyra97070;rank=3 scaffold_151 . exon 40892 41106 . + . ID=Phyra97070.3;Parent=Phyra97070;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_151 . CDS 41175 41263 . + 0 ID=Phyra97070;Parent=Phyra97070;rank=4 scaffold_151 . exon 41175 41263 . + . ID=Phyra97070.4;Parent=Phyra97070;constitutive=1;ensembl_phase=1;rank=4 scaffold_151 . CDS 41337 41735 . + 0 ID=Phyra97070;Parent=Phyra97070;rank=5 scaffold_151 . exon 41337 41735 . + . ID=Phyra97070.5;Parent=Phyra97070;constitutive=1;rank=5 scaffold_151 ensembl protein_coding_gene 43933 45016 . + . ID=Phyra97072;biotype=protein_coding;external_name=C_scaffold_151000010;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 43933 45016 . + . ID=Phyra97072;Parent=Phyra97072;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 43933 44070 . + 0 ID=Phyra97072;Parent=Phyra97072;rank=1 scaffold_151 . exon 43933 44070 . + . ID=Phyra97072.1;Parent=Phyra97072;constitutive=1;rank=1 scaffold_151 . CDS 44381 45016 . + 0 ID=Phyra97072;Parent=Phyra97072;rank=2 scaffold_151 . repeat_region 52292 52341 . ? . description=dust scaffold_151 ensembl protein_coding_gene 46058 47620 . - . ID=Phyra85201;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_151000018;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 46058 47620 . - . ID=Phyra85201;Parent=Phyra85201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 46058 47620 . - 0 ID=Phyra85201;Parent=Phyra85201;rank=1 scaffold_151 . exon 46058 47620 . - . ID=Phyra85201.1;Parent=Phyra85201;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 51292 52466 . + . ID=Phyra85202;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_151000019;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 51292 52466 . + . ID=Phyra85202;Parent=Phyra85202;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 51292 51352 . + 0 ID=Phyra85202;Parent=Phyra85202;rank=1 scaffold_151 . exon 51292 51352 . + . ID=Phyra85202.1;Parent=Phyra85202;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_151 . CDS 51486 51509 . + 0 ID=Phyra85202;Parent=Phyra85202;rank=2 scaffold_151 . exon 51486 51509 . + . ID=Phyra85202.2;Parent=Phyra85202;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_151 . CDS 51755 52266 . + 0 ID=Phyra85202;Parent=Phyra85202;rank=3 scaffold_151 . exon 51755 52266 . + . ID=Phyra85202.3;Parent=Phyra85202;constitutive=1;ensembl_phase=1;rank=3 scaffold_151 . CDS 52455 52466 . + 0 ID=Phyra85202;Parent=Phyra85202;rank=4 scaffold_151 . exon 52455 52466 . + . ID=Phyra85202.4;Parent=Phyra85202;constitutive=1;rank=4 scaffold_151 . exon 44381 45016 . + . ID=Phyra97072.2;Parent=Phyra97072;constitutive=1;rank=2 scaffold_151 . biological_region 61597 61598 0.999 + . logic_name=eponine scaffold_151 . biological_region 61806 61809 0.999 - . logic_name=eponine scaffold_151 ensembl tRNA_gene 61453 61524 . + . ID=EPrPRAG00000000088;biotype=tRNA;description=tRNA-Ala for anticodon CGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_151 ensembl transcript 61453 61524 . + . ID=EPrPRAT00000000088;Parent=EPrPRAG00000000088;biotype=tRNA;logic_name=ncrna_eg scaffold_151 ensembl tRNA_gene 61998 62069 . + . ID=EPrPRAG00000000188;biotype=tRNA;description=tRNA-Ala for anticodon CGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_151 ensembl transcript 61998 62069 . + . ID=EPrPRAT00000000188;Parent=EPrPRAG00000000188;biotype=tRNA;logic_name=ncrna_eg scaffold_151 . exon 61453 61524 . + . ID=EPrPRAE00000000088;Parent=EPrPRAT00000000088;constitutive=1;rank=1 scaffold_151 . exon 61998 62069 . + . ID=EPrPRAE00000000188;Parent=EPrPRAT00000000188;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 59693 59947 . + . ID=Phyra42163;biotype=protein_coding;external_name=gwEuk.151.32.1;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 59693 59947 . + . ID=Phyra42163;Parent=Phyra42163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 59693 59947 . + 0 ID=Phyra42163;Parent=Phyra42163;rank=1 scaffold_151 . exon 59693 59947 . + . ID=Phyra42163.1;Parent=Phyra42163;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 54948 56039 . + . ID=Phyra72310;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_151000004;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 54948 56039 . + . ID=Phyra72310;Parent=Phyra72310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 54948 56039 . + 0 ID=Phyra72310;Parent=Phyra72310;rank=1 scaffold_151 . exon 54948 56039 . + . ID=Phyra72310.1;Parent=Phyra72310;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 60373 60873 . + . ID=Phyra72312;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_151000006;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 60373 60873 . + . ID=Phyra72312;Parent=Phyra72312;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 60373 60873 . + 0 ID=Phyra72312;Parent=Phyra72312;rank=1 scaffold_151 . exon 60373 60873 . + . ID=Phyra72312.1;Parent=Phyra72312;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 56156 59203 . + . ID=Phyra85204;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_151000021;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 56156 59203 . + . ID=Phyra85204;Parent=Phyra85204;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 56156 56466 . + 0 ID=Phyra85204;Parent=Phyra85204;rank=1 scaffold_151 . exon 56156 56466 . + . ID=Phyra85204.1;Parent=Phyra85204;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_151 . CDS 56663 56670 . + 0 ID=Phyra85204;Parent=Phyra85204;rank=2 scaffold_151 . exon 56663 56670 . + . ID=Phyra85204.2;Parent=Phyra85204;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_151 . CDS 56695 56718 . + 0 ID=Phyra85204;Parent=Phyra85204;rank=3 scaffold_151 . exon 56695 56718 . + . ID=Phyra85204.3;Parent=Phyra85204;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_151 . CDS 56964 57561 . + 0 ID=Phyra85204;Parent=Phyra85204;rank=4 scaffold_151 . exon 56964 57561 . + . ID=Phyra85204.4;Parent=Phyra85204;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_151 . CDS 57733 59203 . + 0 ID=Phyra85204;Parent=Phyra85204;rank=5 scaffold_151 . exon 57733 59203 . + . ID=Phyra85204.5;Parent=Phyra85204;constitutive=1;ensembl_phase=2;rank=5 scaffold_151 ensembl protein_coding_gene 61602 61991 . - . ID=Phyra85207;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_151000024;logic_name=jgi_phyra1 scaffold_151 ensembl transcript 61602 61991 . - . ID=Phyra85207;Parent=Phyra85207;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_151 . CDS 61602 61991 . - 0 ID=Phyra85207;Parent=Phyra85207;rank=1 scaffold_151 . exon 61602 61991 . - . ID=Phyra85207.1;Parent=Phyra85207;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_150 1 63169 scaffold_150 . repeat_region 1300 1349 . ? . description=dust scaffold_150 . repeat_region 2744 3492 . ? . description=dust scaffold_150 . repeat_region 5085 5826 . ? . description=dust scaffold_150 . biological_region 7652 7652 0.999 - . logic_name=eponine scaffold_150 . repeat_region 7674 7683 . ? . description=dust scaffold_150 . biological_region 8453 8454 0.999 + . logic_name=eponine scaffold_150 . biological_region 8672 8673 0.999 - . logic_name=eponine scaffold_150 . biological_region 8834 8837 0.999 - . logic_name=eponine scaffold_150 ensembl protein_coding_gene 2382 4356 . - . ID=Phyra85178;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_150000001;logic_name=jgi_phyra1 scaffold_150 ensembl transcript 2382 4356 . - . ID=Phyra85178;Parent=Phyra85178;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_150 . CDS 2382 2532 . - 0 ID=Phyra85178;Parent=Phyra85178;rank=2 scaffold_150 . exon 2382 2532 . - . ID=Phyra85178.2;Parent=Phyra85178;constitutive=1;ensembl_phase=2;rank=2 scaffold_150 . CDS 3656 4356 . - 0 ID=Phyra85178;Parent=Phyra85178;rank=1 scaffold_150 . exon 3656 4356 . - . ID=Phyra85178.1;Parent=Phyra85178;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_150 ensembl protein_coding_gene 6068 6850 . - . ID=Phyra85179;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_150000002;logic_name=jgi_phyra1 scaffold_150 ensembl transcript 6068 6850 . - . ID=Phyra85179;Parent=Phyra85179;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_150 . CDS 6068 6850 . - 0 ID=Phyra85179;Parent=Phyra85179;rank=1 scaffold_150 . exon 6068 6850 . - . ID=Phyra85179.1;Parent=Phyra85179;constitutive=1;rank=1 scaffold_150 . repeat_region 10453 10488 . ? . description=trf scaffold_150 ensembl protein_coding_gene 12783 13851 . + . ID=Phyra85180;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_150000003;logic_name=jgi_phyra1 scaffold_150 ensembl transcript 12783 13851 . + . ID=Phyra85180;Parent=Phyra85180;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_150 . CDS 12783 13730 . + 0 ID=Phyra85180;Parent=Phyra85180;rank=1 scaffold_150 . exon 12783 13730 . + . ID=Phyra85180.1;Parent=Phyra85180;constitutive=1;rank=1 scaffold_150 . CDS 13834 13851 . + 0 ID=Phyra85180;Parent=Phyra85180;rank=2 scaffold_150 . exon 13834 13851 . + . ID=Phyra85180.2;Parent=Phyra85180;constitutive=1;rank=2 scaffold_150 . repeat_region 18461 18510 . ? . description=dust scaffold_150 . biological_region 24420 24423 0.999 + . logic_name=eponine scaffold_150 . repeat_region 32386 32428 . ? . description=trf scaffold_150 . repeat_region 32621 51565 . ? . description=dust scaffold_150 . biological_region 51800 51804 0.999 + . logic_name=eponine scaffold_150 . biological_region 53791 53792 0.999 + . logic_name=eponine scaffold_150 ensembl protein_coding_gene 53692 54606 . + . ID=Phyra85181;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_150000004;logic_name=jgi_phyra1 scaffold_150 ensembl transcript 53692 54606 . + . ID=Phyra85181;Parent=Phyra85181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_150 . CDS 53692 54606 . + 0 ID=Phyra85181;Parent=Phyra85181;rank=1 scaffold_150 . exon 53692 54606 . + . ID=Phyra85181.1;Parent=Phyra85181;constitutive=1;rank=1 scaffold_150 . repeat_region 55025 55075 . ? . description=dust scaffold_150 . repeat_region 57448 57514 . ? . description=trf scaffold_150 . repeat_region 57484 57525 . ? . description=trf scaffold_150 . repeat_region 59714 59763 . ? . description=dust scaffold_150 . repeat_region 61295 61427 . ? . description=trf scaffold_150 . repeat_region 61295 61431 . ? . description=trf scaffold_150 . repeat_region 61295 61431 . ? . description=trf scaffold_150 . repeat_region 61299 61361 . ? . description=dust scaffold_150 ensembl protein_coding_gene 55959 57162 . - . ID=Phyra85182;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_150000005;logic_name=jgi_phyra1 scaffold_150 ensembl transcript 55959 57162 . - . ID=Phyra85182;Parent=Phyra85182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_150 . CDS 55959 55969 . - 0 ID=Phyra85182;Parent=Phyra85182;rank=3 scaffold_150 . exon 55959 55969 . - . ID=Phyra85182.3;Parent=Phyra85182;constitutive=1;ensembl_phase=1;rank=3 scaffold_150 . CDS 55999 56163 . - 0 ID=Phyra85182;Parent=Phyra85182;rank=2 scaffold_150 . exon 55999 56163 . - . ID=Phyra85182.2;Parent=Phyra85182;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_150 . CDS 56235 57162 . - 0 ID=Phyra85182;Parent=Phyra85182;rank=1 scaffold_150 . exon 56235 57162 . - . ID=Phyra85182.1;Parent=Phyra85182;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_150 ensembl protein_coding_gene 60328 63030 . + . ID=Phyra85183;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_150000006;logic_name=jgi_phyra1 scaffold_150 ensembl transcript 60328 63030 . + . ID=Phyra85183;Parent=Phyra85183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_150 . CDS 60328 60512 . + 0 ID=Phyra85183;Parent=Phyra85183;rank=1 scaffold_150 . exon 60328 60512 . + . ID=Phyra85183.1;Parent=Phyra85183;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_150 . CDS 60544 60682 . + 0 ID=Phyra85183;Parent=Phyra85183;rank=2 scaffold_150 . exon 60544 60682 . + . ID=Phyra85183.2;Parent=Phyra85183;constitutive=1;ensembl_phase=2;rank=2 scaffold_150 . CDS 60739 60870 . + 0 ID=Phyra85183;Parent=Phyra85183;rank=3 scaffold_150 . exon 60739 60870 . + . ID=Phyra85183.3;Parent=Phyra85183;constitutive=1;rank=3 scaffold_150 . CDS 61068 61082 . + 0 ID=Phyra85183;Parent=Phyra85183;rank=4 scaffold_150 . exon 61068 61082 . + . ID=Phyra85183.4;Parent=Phyra85183;constitutive=1;rank=4 scaffold_150 . CDS 61269 61460 . + 0 ID=Phyra85183;Parent=Phyra85183;rank=5 scaffold_150 . exon 61269 61460 . + . ID=Phyra85183.5;Parent=Phyra85183;constitutive=1;rank=5 scaffold_150 . CDS 61537 61586 . + 0 ID=Phyra85183;Parent=Phyra85183;rank=6 scaffold_150 . exon 61537 61586 . + . ID=Phyra85183.6;Parent=Phyra85183;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_150 . CDS 61676 63030 . + 0 ID=Phyra85183;Parent=Phyra85183;rank=7 scaffold_150 . exon 61676 63030 . + . ID=Phyra85183.7;Parent=Phyra85183;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 ##gff-version 3 ##sequence-region scaffold_148 1 64242 scaffold_148 . biological_region 553 553 0.999 - . logic_name=eponine scaffold_148 . biological_region 1159 1163 0.999 + . logic_name=eponine scaffold_148 . repeat_region 2311 2319 . ? . description=dust scaffold_148 . repeat_region 7255 24020 . ? . description=dust scaffold_148 ensembl protein_coding_gene 45 1425 . - . ID=Phyra72304;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_148000001;logic_name=jgi_phyra1 scaffold_148 ensembl transcript 45 1425 . - . ID=Phyra72304;Parent=Phyra72304;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_148 . CDS 45 1257 . - 0 ID=Phyra72304;Parent=Phyra72304;rank=2 scaffold_148 . exon 45 1257 . - . ID=Phyra72304.2;Parent=Phyra72304;constitutive=1;ensembl_phase=2;rank=2 scaffold_148 . CDS 1382 1425 . - 0 ID=Phyra72304;Parent=Phyra72304;rank=1 scaffold_148 . exon 1382 1425 . - . ID=Phyra72304.1;Parent=Phyra72304;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_148 . repeat_region 7255 24020 . ? . description=dust scaffold_148 . repeat_region 25319 28417 . ? . description=dust scaffold_148 . repeat_region 32508 32547 . ? . description=trf scaffold_148 ensembl protein_coding_gene 33904 34803 . - . ID=Phyra85161;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_148000002;logic_name=jgi_phyra1 scaffold_148 ensembl transcript 33904 34803 . - . ID=Phyra85161;Parent=Phyra85161;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_148 . CDS 33904 34803 . - 0 ID=Phyra85161;Parent=Phyra85161;rank=1 scaffold_148 . exon 33904 34803 . - . ID=Phyra85161.1;Parent=Phyra85161;constitutive=1;rank=1 scaffold_148 ensembl protein_coding_gene 36378 37034 . - . ID=Phyra85162;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_148000003;logic_name=jgi_phyra1 scaffold_148 ensembl transcript 36378 37034 . - . ID=Phyra85162;Parent=Phyra85162;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_148 . CDS 36378 36707 . - 0 ID=Phyra85162;Parent=Phyra85162;rank=2 scaffold_148 . exon 36378 36707 . - . ID=Phyra85162.2;Parent=Phyra85162;constitutive=1;rank=2 scaffold_148 . CDS 36741 37034 . - 0 ID=Phyra85162;Parent=Phyra85162;rank=1 scaffold_148 . repeat_region 39039 39047 . ? . description=dust scaffold_148 . repeat_region 39112 39120 . ? . description=dust scaffold_148 . repeat_region 39207 39219 . ? . description=dust scaffold_148 . repeat_region 39932 40354 . ? . description=dust scaffold_148 . repeat_region 44473 44480 . ? . description=dust scaffold_148 . repeat_region 44623 44630 . ? . description=dust scaffold_148 ensembl pseudogene 41326 42006 . + . ID=Phyra41926;biotype=pseudogene;external_name=gwEuk.148.4.1;logic_name=jgi_phyra1 scaffold_148 ensembl pseudogene 41326 42006 . + . ID=Phyra41926;Parent=Phyra41926;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_148 . exon 41326 42006 . + . ID=Phyra41926.1;Parent=Phyra41926;constitutive=1;rank=1 scaffold_148 ensembl pseudogene 43979 44250 . - . ID=Phyra41929;biotype=pseudogene;external_name=gwEuk.148.7.1;logic_name=jgi_phyra1 scaffold_148 ensembl pseudogene 43979 44250 . - . ID=Phyra41929;Parent=Phyra41929;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_148 . exon 43979 44250 . - . ID=Phyra41929.1;Parent=Phyra41929;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_148 . exon 36741 37034 . - . ID=Phyra85162.1;Parent=Phyra85162;constitutive=1;rank=1 scaffold_148 ensembl protein_coding_gene 53390 54178 . + . ID=Phyra85164;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_148000005;logic_name=jgi_phyra1 scaffold_148 ensembl transcript 53390 54178 . + . ID=Phyra85164;Parent=Phyra85164;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_148 . CDS 53390 53474 . + 0 ID=Phyra85164;Parent=Phyra85164;rank=1 scaffold_148 . exon 53390 53474 . + . ID=Phyra85164.1;Parent=Phyra85164;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_148 . CDS 53547 54178 . + 0 ID=Phyra85164;Parent=Phyra85164;rank=2 scaffold_148 . exon 53547 54178 . + . ID=Phyra85164.2;Parent=Phyra85164;constitutive=1;ensembl_phase=1;rank=2 scaffold_148 . repeat_region 55899 55909 . ? . description=dust scaffold_148 . repeat_region 57279 57419 . + . description=GypsyPi-1c_LTR scaffold_148 . repeat_region 57899 62967 . ? . description=dust scaffold_148 . biological_region 63464 63468 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_146 1 64939 scaffold_146 . repeat_region 1111 1197 . ? . description=trf scaffold_146 . repeat_region 1247 7249 . ? . description=dust scaffold_146 . repeat_region 7959 8107 . ? . description=trf scaffold_146 . repeat_region 8136 8185 . ? . description=dust scaffold_146 . repeat_region 8699 8786 . ? . description=trf scaffold_146 ensembl protein_coding_gene 8203 8897 . + . ID=Phyra85149;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_146000001;logic_name=jgi_phyra1 scaffold_146 ensembl transcript 8203 8897 . + . ID=Phyra85149;Parent=Phyra85149;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_146 . CDS 8203 8517 . + 0 ID=Phyra85149;Parent=Phyra85149;rank=1 scaffold_146 . exon 8203 8517 . + . ID=Phyra85149.1;Parent=Phyra85149;constitutive=1;rank=1 scaffold_146 . CDS 8679 8897 . + 0 ID=Phyra85149;Parent=Phyra85149;rank=2 scaffold_146 . exon 8679 8897 . + . ID=Phyra85149.2;Parent=Phyra85149;constitutive=1;rank=2 scaffold_146 . biological_region 14633 14633 0.999 + . logic_name=eponine scaffold_146 ensembl protein_coding_gene 9388 9984 . + . ID=Phyra85150;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_146000002;logic_name=jgi_phyra1 scaffold_146 ensembl transcript 9388 9984 . + . ID=Phyra85150;Parent=Phyra85150;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_146 . CDS 9388 9791 . + 0 ID=Phyra85150;Parent=Phyra85150;rank=1 scaffold_146 . exon 9388 9791 . + . ID=Phyra85150.1;Parent=Phyra85150;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_146 . CDS 9861 9984 . + 0 ID=Phyra85150;Parent=Phyra85150;rank=2 scaffold_146 . exon 9861 9984 . + . ID=Phyra85150.2;Parent=Phyra85150;constitutive=1;ensembl_phase=2;rank=2 scaffold_146 ensembl protein_coding_gene 10563 17341 . + . ID=Phyra85151;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_146000003;logic_name=jgi_phyra1 scaffold_146 ensembl transcript 10563 17341 . + . ID=Phyra85151;Parent=Phyra85151;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_146 . CDS 10563 11291 . + 0 ID=Phyra85151;Parent=Phyra85151;rank=1 scaffold_146 . exon 10563 11291 . + . ID=Phyra85151.1;Parent=Phyra85151;constitutive=1;rank=1 scaffold_146 . CDS 11319 12191 . + 0 ID=Phyra85151;Parent=Phyra85151;rank=2 scaffold_146 . exon 11319 12191 . + . ID=Phyra85151.2;Parent=Phyra85151;constitutive=1;rank=2 scaffold_146 . CDS 12549 13847 . + 0 ID=Phyra85151;Parent=Phyra85151;rank=3 scaffold_146 . exon 12549 13847 . + . ID=Phyra85151.3;Parent=Phyra85151;constitutive=1;rank=3 scaffold_146 . CDS 14220 17115 . + 0 ID=Phyra85151;Parent=Phyra85151;rank=4 scaffold_146 . exon 14220 17115 . + . ID=Phyra85151.4;Parent=Phyra85151;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_146 . CDS 17190 17341 . + 0 ID=Phyra85151;Parent=Phyra85151;rank=5 scaffold_146 . exon 17190 17341 . + . ID=Phyra85151.5;Parent=Phyra85151;constitutive=1;ensembl_phase=1;rank=5 scaffold_146 . repeat_region 23014 26468 . ? . description=dust scaffold_146 . repeat_region 27826 34285 . ? . description=dust scaffold_146 ensembl protein_coding_gene 18881 20431 . - . ID=Phyra85152;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_146000004;logic_name=jgi_phyra1 scaffold_146 ensembl transcript 18881 20431 . - . ID=Phyra85152;Parent=Phyra85152;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_146 . CDS 18881 20431 . - 0 ID=Phyra85152;Parent=Phyra85152;rank=1 scaffold_146 . exon 18881 20431 . - . ID=Phyra85152.1;Parent=Phyra85152;constitutive=1;rank=1 scaffold_146 . repeat_region 37629 37638 . ? . description=dust scaffold_146 . biological_region 44189 44190 0.999 - . logic_name=eponine scaffold_146 ensembl protein_coding_gene 37661 48085 . + . ID=Phyra85153;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_146000005;logic_name=jgi_phyra1 scaffold_146 ensembl transcript 37661 48085 . + . ID=Phyra85153;Parent=Phyra85153;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_146 . CDS 37661 38141 . + 0 ID=Phyra85153;Parent=Phyra85153;rank=1 scaffold_146 . exon 37661 38141 . + . ID=Phyra85153.1;Parent=Phyra85153;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_146 . CDS 38340 48085 . + 0 ID=Phyra85153;Parent=Phyra85153;rank=2 scaffold_146 . exon 38340 48085 . + . ID=Phyra85153.2;Parent=Phyra85153;constitutive=1;ensembl_phase=1;rank=2 scaffold_146 ensembl protein_coding_gene 49460 50008 . - . ID=Phyra85154;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_146000006;logic_name=jgi_phyra1 scaffold_146 ensembl transcript 49460 50008 . - . ID=Phyra85154;Parent=Phyra85154;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_146 . CDS 49460 50008 . - 0 ID=Phyra85154;Parent=Phyra85154;rank=1 scaffold_146 . exon 49460 50008 . - . ID=Phyra85154.1;Parent=Phyra85154;constitutive=1;rank=1 scaffold_146 ensembl protein_coding_gene 53897 54394 . + . ID=Phyra85155;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_146000007;logic_name=jgi_phyra1 scaffold_146 ensembl transcript 53897 54394 . + . ID=Phyra85155;Parent=Phyra85155;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_146 . CDS 53897 54394 . + 0 ID=Phyra85155;Parent=Phyra85155;rank=1 scaffold_146 . exon 53897 54394 . + . ID=Phyra85155.1;Parent=Phyra85155;constitutive=1;rank=1 scaffold_146 ensembl protein_coding_gene 55271 56502 . + . ID=Phyra85156;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_146000008;logic_name=jgi_phyra1 scaffold_146 ensembl transcript 55271 56502 . + . ID=Phyra85156;Parent=Phyra85156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_146 . CDS 55271 56384 . + 0 ID=Phyra85156;Parent=Phyra85156;rank=1 scaffold_146 . exon 55271 56384 . + . ID=Phyra85156.1;Parent=Phyra85156;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_146 . CDS 56477 56502 . + 0 ID=Phyra85156;Parent=Phyra85156;rank=2 scaffold_146 . repeat_region 57200 61673 . ? . description=dust scaffold_146 . repeat_region 62428 62656 . + . description=GypsyPi-1c_LTR scaffold_146 . exon 56477 56502 . + . ID=Phyra85156.2;Parent=Phyra85156;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_147 1 64982 scaffold_147 . repeat_region 2093 2165 . ? . description=dust scaffold_147 . repeat_region 2714 2721 . ? . description=dust scaffold_147 . biological_region 2955 2957 0.999 + . logic_name=eponine scaffold_147 . biological_region 3032 3033 0.999 - . logic_name=eponine scaffold_147 . repeat_region 3631 4090 . ? . description=dust scaffold_147 . repeat_region 4169 4197 . ? . description=trf scaffold_147 . repeat_region 6537 7054 . ? . description=dust scaffold_147 . repeat_region 8563 8612 . ? . description=dust scaffold_147 ensembl protein_coding_gene 628 2033 . - . ID=Phyra85157;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_147000001;logic_name=jgi_phyra1 scaffold_147 ensembl transcript 628 2033 . - . ID=Phyra85157;Parent=Phyra85157;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_147 . CDS 628 638 . - 0 ID=Phyra85157;Parent=Phyra85157;rank=2 scaffold_147 . exon 628 638 . - . ID=Phyra85157.2;Parent=Phyra85157;constitutive=1;ensembl_phase=1;rank=2 scaffold_147 . CDS 704 2033 . - 0 ID=Phyra85157;Parent=Phyra85157;rank=1 scaffold_147 . exon 704 2033 . - . ID=Phyra85157.1;Parent=Phyra85157;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_147 ensembl protein_coding_gene 7301 8095 . + . ID=Phyra85158;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_147000002;logic_name=jgi_phyra1 scaffold_147 ensembl transcript 7301 8095 . + . ID=Phyra85158;Parent=Phyra85158;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_147 . CDS 7301 8095 . + 0 ID=Phyra85158;Parent=Phyra85158;rank=1 scaffold_147 . exon 7301 8095 . + . ID=Phyra85158.1;Parent=Phyra85158;constitutive=1;rank=1 scaffold_147 ensembl protein_coding_gene 9516 10677 . - . ID=Phyra85159;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_147000003;logic_name=jgi_phyra1 scaffold_147 ensembl transcript 9516 10677 . - . ID=Phyra85159;Parent=Phyra85159;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_147 . CDS 9516 9945 . - 0 ID=Phyra85159;Parent=Phyra85159;rank=3 scaffold_147 . exon 9516 9945 . - . ID=Phyra85159.3;Parent=Phyra85159;constitutive=1;ensembl_phase=2;rank=3 scaffold_147 . CDS 9999 10490 . - 0 ID=Phyra85159;Parent=Phyra85159;rank=2 scaffold_147 . exon 9999 10490 . - . ID=Phyra85159.2;Parent=Phyra85159;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_147 . CDS 10613 10677 . - 0 ID=Phyra85159;Parent=Phyra85159;rank=1 scaffold_147 . exon 10613 10677 . - . ID=Phyra85159.1;Parent=Phyra85159;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_147 . repeat_region 12104 38875 . ? . description=dust scaffold_147 . repeat_region 12104 38875 . ? . description=dust scaffold_147 . repeat_region 40251 40556 . - . description=GypsyPi-1c_LTR scaffold_147 . repeat_region 42257 44370 . + . description=Gypsy-1-I_PI-int scaffold_147 . repeat_region 44539 44943 . + . description=Gypsy-1-I_PI-int scaffold_147 . repeat_region 49368 49410 . ? . description=trf scaffold_147 . repeat_region 58331 59884 . ? . description=dust scaffold_147 . biological_region 60117 60118 0.999 + . logic_name=eponine scaffold_147 . repeat_region 60623 61166 . + . description=GypsyPi-1c_I-int scaffold_147 . repeat_region 61168 64096 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_145 1 66099 scaffold_145 . repeat_region 1865 2995 . ? . description=dust scaffold_145 . repeat_region 4314 4358 . ? . description=trf scaffold_145 . repeat_region 5028 5035 . ? . description=dust scaffold_145 ensembl protein_coding_gene 1259 5778 . - . ID=Phyra85143;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_145000001;logic_name=jgi_phyra1 scaffold_145 ensembl transcript 1259 5778 . - . ID=Phyra85143;Parent=Phyra85143;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_145 . CDS 1259 1312 . - 0 ID=Phyra85143;Parent=Phyra85143;rank=5 scaffold_145 . exon 1259 1312 . - . ID=Phyra85143.5;Parent=Phyra85143;constitutive=1;rank=5 scaffold_145 . CDS 1608 1738 . - 0 ID=Phyra85143;Parent=Phyra85143;rank=4 scaffold_145 . exon 1608 1738 . - . ID=Phyra85143.4;Parent=Phyra85143;constitutive=1;ensembl_phase=1;rank=4 scaffold_145 . CDS 3029 3050 . - 0 ID=Phyra85143;Parent=Phyra85143;rank=3 scaffold_145 . exon 3029 3050 . - . ID=Phyra85143.3;Parent=Phyra85143;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_145 . CDS 3102 4993 . - 0 ID=Phyra85143;Parent=Phyra85143;rank=2 scaffold_145 . exon 3102 4993 . - . ID=Phyra85143.2;Parent=Phyra85143;constitutive=1;ensembl_phase=1;rank=2 scaffold_145 . CDS 5040 5778 . - 0 ID=Phyra85143;Parent=Phyra85143;rank=1 scaffold_145 . exon 5040 5778 . - . ID=Phyra85143.1;Parent=Phyra85143;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_145 . biological_region 18879 18880 0.999 + . logic_name=eponine scaffold_145 ensembl protein_coding_gene 17757 20943 . - . ID=Phyra85144;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_145000002;logic_name=jgi_phyra1 scaffold_145 ensembl transcript 17757 20943 . - . ID=Phyra85144;Parent=Phyra85144;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_145 . CDS 17757 17801 . - 0 ID=Phyra85144;Parent=Phyra85144;rank=3 scaffold_145 . exon 17757 17801 . - . ID=Phyra85144.3;Parent=Phyra85144;constitutive=1;rank=3 scaffold_145 . CDS 18166 18684 . - 0 ID=Phyra85144;Parent=Phyra85144;rank=2 scaffold_145 . exon 18166 18684 . - . ID=Phyra85144.2;Parent=Phyra85144;constitutive=1;rank=2 scaffold_145 . CDS 19348 20943 . - 0 ID=Phyra85144;Parent=Phyra85144;rank=1 scaffold_145 . repeat_region 21609 21648 . ? . description=trf scaffold_145 . repeat_region 21618 21732 . ? . description=trf scaffold_145 . repeat_region 21660 21719 . ? . description=trf scaffold_145 . repeat_region 21660 21719 . ? . description=trf scaffold_145 . repeat_region 23289 23296 . ? . description=dust scaffold_145 . repeat_region 23644 26288 . ? . description=dust scaffold_145 . exon 19348 20943 . - . ID=Phyra85144.1;Parent=Phyra85144;constitutive=1;rank=1 scaffold_145 ensembl protein_coding_gene 21417 22223 . + . ID=Phyra85145;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_145000003;logic_name=jgi_phyra1 scaffold_145 ensembl transcript 21417 22223 . + . ID=Phyra85145;Parent=Phyra85145;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_145 . CDS 21417 22223 . + 0 ID=Phyra85145;Parent=Phyra85145;rank=1 scaffold_145 . exon 21417 22223 . + . ID=Phyra85145.1;Parent=Phyra85145;constitutive=1;rank=1 scaffold_145 ensembl protein_coding_gene 22425 26496 . - . ID=Phyra85146;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_145000004;logic_name=jgi_phyra1 scaffold_145 ensembl transcript 22425 26496 . - . ID=Phyra85146;Parent=Phyra85146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_145 . CDS 22425 22589 . - 0 ID=Phyra85146;Parent=Phyra85146;rank=6 scaffold_145 . exon 22425 22589 . - . ID=Phyra85146.6;Parent=Phyra85146;constitutive=1;rank=6 scaffold_145 . CDS 22663 22781 . - 0 ID=Phyra85146;Parent=Phyra85146;rank=5 scaffold_145 . exon 22663 22781 . - . ID=Phyra85146.5;Parent=Phyra85146;constitutive=1;ensembl_phase=1;rank=5 scaffold_145 . CDS 22851 23004 . - 0 ID=Phyra85146;Parent=Phyra85146;rank=4 scaffold_145 . exon 22851 23004 . - . ID=Phyra85146.4;Parent=Phyra85146;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_145 . CDS 23066 23284 . - 0 ID=Phyra85146;Parent=Phyra85146;rank=3 scaffold_145 . exon 23066 23284 . - . ID=Phyra85146.3;Parent=Phyra85146;constitutive=1;rank=3 scaffold_145 . CDS 23355 23624 . - 0 ID=Phyra85146;Parent=Phyra85146;rank=2 scaffold_145 . exon 23355 23624 . - . ID=Phyra85146.2;Parent=Phyra85146;constitutive=1;rank=2 scaffold_145 . CDS 26296 26496 . - 0 ID=Phyra85146;Parent=Phyra85146;rank=1 scaffold_145 . exon 26296 26496 . - . ID=Phyra85146.1;Parent=Phyra85146;constitutive=1;rank=1 scaffold_145 ensembl protein_coding_gene 26764 27355 . + . ID=Phyra85147;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_145000005;logic_name=jgi_phyra1 scaffold_145 ensembl transcript 26764 27355 . + . ID=Phyra85147;Parent=Phyra85147;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_145 . CDS 26764 27033 . + 0 ID=Phyra85147;Parent=Phyra85147;rank=1 scaffold_145 . exon 26764 27033 . + . ID=Phyra85147.1;Parent=Phyra85147;constitutive=1;rank=1 scaffold_145 . CDS 27094 27222 . + 0 ID=Phyra85147;Parent=Phyra85147;rank=2 scaffold_145 . exon 27094 27222 . + . ID=Phyra85147.2;Parent=Phyra85147;constitutive=1;rank=2 scaffold_145 . CDS 27251 27355 . + 0 ID=Phyra85147;Parent=Phyra85147;rank=3 scaffold_145 . exon 27251 27355 . + . ID=Phyra85147.3;Parent=Phyra85147;constitutive=1;rank=3 scaffold_145 ensembl protein_coding_gene 29870 30415 . - . ID=Phyra85148;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_145000006;logic_name=jgi_phyra1 scaffold_145 ensembl transcript 29870 30415 . - . ID=Phyra85148;Parent=Phyra85148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_145 . CDS 29870 30415 . - 0 ID=Phyra85148;Parent=Phyra85148;rank=1 scaffold_145 . exon 29870 30415 . - . ID=Phyra85148.1;Parent=Phyra85148;constitutive=1;rank=1 scaffold_145 . repeat_region 32998 48714 . ? . description=dust scaffold_145 . repeat_region 56926 62588 . ? . description=dust scaffold_145 . repeat_region 63933 64969 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_144 1 69576 scaffold_144 . repeat_region 2145 7647 . ? . description=dust scaffold_144 . repeat_region 8027 8069 . ? . description=trf scaffold_144 . repeat_region 8357 8423 . ? . description=trf scaffold_144 . repeat_region 8357 8436 . ? . description=dust scaffold_144 . repeat_region 8690 32031 . ? . description=dust scaffold_144 . repeat_region 8690 32031 . ? . description=dust scaffold_144 . biological_region 34159 34164 0.999 + . logic_name=eponine scaffold_144 . biological_region 34385 34388 0.999 - . logic_name=eponine scaffold_144 . repeat_region 34512 34578 . ? . description=trf scaffold_144 . repeat_region 34512 34591 . ? . description=trf scaffold_144 . biological_region 34514 34519 0.999 + . logic_name=eponine scaffold_144 . biological_region 34610 34618 0.999 - . logic_name=eponine scaffold_144 . biological_region 34654 34660 0.999 - . logic_name=eponine scaffold_144 . biological_region 35234 35240 0.999 - . logic_name=eponine scaffold_144 . biological_region 35539 35541 0.999 + . logic_name=eponine scaffold_144 . biological_region 35981 35982 0.999 + . logic_name=eponine scaffold_144 . biological_region 36118 36119 0.999 - . logic_name=eponine scaffold_144 . biological_region 37984 37988 0.999 + . logic_name=eponine scaffold_144 . repeat_region 39196 39392 . + . description=GypsyPi-1c_I-int scaffold_144 . repeat_region 39697 39975 . + . description=GypsyPi-1c_I-int scaffold_144 ensembl protein_coding_gene 34876 36220 . - . ID=Phyra85135;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_144000001;logic_name=jgi_phyra1 scaffold_144 ensembl transcript 34876 36220 . - . ID=Phyra85135;Parent=Phyra85135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_144 . CDS 34876 34954 . - 0 ID=Phyra85135;Parent=Phyra85135;rank=3 scaffold_144 . exon 34876 34954 . - . ID=Phyra85135.3;Parent=Phyra85135;constitutive=1;ensembl_phase=2;rank=3 scaffold_144 . CDS 35078 35227 . - 0 ID=Phyra85135;Parent=Phyra85135;rank=2 scaffold_144 . exon 35078 35227 . - . ID=Phyra85135.2;Parent=Phyra85135;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_144 . CDS 35454 36220 . - 0 ID=Phyra85135;Parent=Phyra85135;rank=1 scaffold_144 . exon 35454 36220 . - . ID=Phyra85135.1;Parent=Phyra85135;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_144 ensembl protein_coding_gene 37704 38696 . + . ID=Phyra85136;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_144000002;logic_name=jgi_phyra1 scaffold_144 ensembl transcript 37704 38696 . + . ID=Phyra85136;Parent=Phyra85136;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_144 . CDS 37704 38696 . + 0 ID=Phyra85136;Parent=Phyra85136;rank=1 scaffold_144 . exon 37704 38696 . + . ID=Phyra85136.1;Parent=Phyra85136;constitutive=1;rank=1 scaffold_144 . repeat_region 40224 40246 . ? . description=dust scaffold_144 . repeat_region 42788 42795 . ? . description=dust scaffold_144 . repeat_region 46988 47005 . ? . description=dust scaffold_144 . repeat_region 48167 50758 . ? . description=dust scaffold_144 ensembl protein_coding_gene 39992 41588 . - . ID=Phyra85137;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_144000003;logic_name=jgi_phyra1 scaffold_144 ensembl transcript 39992 41588 . - . ID=Phyra85137;Parent=Phyra85137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_144 . CDS 39992 40189 . - 0 ID=Phyra85137;Parent=Phyra85137;rank=5 scaffold_144 . exon 39992 40189 . - . ID=Phyra85137.5;Parent=Phyra85137;constitutive=1;rank=5 scaffold_144 . CDS 40261 40388 . - 0 ID=Phyra85137;Parent=Phyra85137;rank=4 scaffold_144 . exon 40261 40388 . - . ID=Phyra85137.4;Parent=Phyra85137;constitutive=1;ensembl_phase=1;rank=4 scaffold_144 . CDS 40425 40622 . - 0 ID=Phyra85137;Parent=Phyra85137;rank=3 scaffold_144 . exon 40425 40622 . - . ID=Phyra85137.3;Parent=Phyra85137;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_144 . CDS 40709 40775 . - 0 ID=Phyra85137;Parent=Phyra85137;rank=2 scaffold_144 . exon 40709 40775 . - . ID=Phyra85137.2;Parent=Phyra85137;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_144 . CDS 40938 41588 . - 0 ID=Phyra85137;Parent=Phyra85137;rank=1 scaffold_144 . exon 40938 41588 . - . ID=Phyra85137.1;Parent=Phyra85137;constitutive=1;rank=1 scaffold_144 ensembl protein_coding_gene 42175 46108 . + . ID=Phyra85138;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_144000004;logic_name=jgi_phyra1 scaffold_144 ensembl transcript 42175 46108 . + . ID=Phyra85138;Parent=Phyra85138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_144 . CDS 42175 42678 . + 0 ID=Phyra85138;Parent=Phyra85138;rank=1 scaffold_144 . exon 42175 42678 . + . ID=Phyra85138.1;Parent=Phyra85138;constitutive=1;rank=1 scaffold_144 . CDS 42802 42945 . + 0 ID=Phyra85138;Parent=Phyra85138;rank=2 scaffold_144 . exon 42802 42945 . + . ID=Phyra85138.2;Parent=Phyra85138;constitutive=1;rank=2 scaffold_144 . CDS 43147 43263 . + 0 ID=Phyra85138;Parent=Phyra85138;rank=3 scaffold_144 . exon 43147 43263 . + . ID=Phyra85138.3;Parent=Phyra85138;constitutive=1;rank=3 scaffold_144 . CDS 43739 44176 . + 0 ID=Phyra85138;Parent=Phyra85138;rank=4 scaffold_144 . exon 43739 44176 . + . ID=Phyra85138.4;Parent=Phyra85138;constitutive=1;rank=4 scaffold_144 . CDS 44240 44449 . + 0 ID=Phyra85138;Parent=Phyra85138;rank=5 scaffold_144 . exon 44240 44449 . + . ID=Phyra85138.5;Parent=Phyra85138;constitutive=1;rank=5 scaffold_144 . CDS 44753 45232 . + 0 ID=Phyra85138;Parent=Phyra85138;rank=6 scaffold_144 . exon 44753 45232 . + . ID=Phyra85138.6;Parent=Phyra85138;constitutive=1;rank=6 scaffold_144 . CDS 45559 46061 . + 0 ID=Phyra85138;Parent=Phyra85138;rank=7 scaffold_144 . exon 45559 46061 . + . ID=Phyra85138.7;Parent=Phyra85138;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_144 . CDS 46102 46108 . + 0 ID=Phyra85138;Parent=Phyra85138;rank=8 scaffold_144 . exon 46102 46108 . + . ID=Phyra85138.8;Parent=Phyra85138;constitutive=1;ensembl_phase=2;rank=8 scaffold_144 . repeat_region 55435 55477 . ? . description=trf scaffold_144 . repeat_region 55458 55570 . ? . description=trf scaffold_144 . repeat_region 55472 55563 . ? . description=trf scaffold_144 ensembl protein_coding_gene 53900 55572 . + . ID=Phyra85139;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_144000005;logic_name=jgi_phyra1 scaffold_144 ensembl transcript 53900 55572 . + . ID=Phyra85139;Parent=Phyra85139;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_144 . CDS 53900 54119 . + 0 ID=Phyra85139;Parent=Phyra85139;rank=1 scaffold_144 . exon 53900 54119 . + . ID=Phyra85139.1;Parent=Phyra85139;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_144 . CDS 54582 55001 . + 0 ID=Phyra85139;Parent=Phyra85139;rank=2 scaffold_144 . exon 54582 55001 . + . ID=Phyra85139.2;Parent=Phyra85139;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_144 . CDS 55083 55114 . + 0 ID=Phyra85139;Parent=Phyra85139;rank=3 scaffold_144 . exon 55083 55114 . + . ID=Phyra85139.3;Parent=Phyra85139;constitutive=1;ensembl_phase=1;rank=3 scaffold_144 . CDS 55363 55572 . + 0 ID=Phyra85139;Parent=Phyra85139;rank=4 scaffold_144 . exon 55363 55572 . + . ID=Phyra85139.4;Parent=Phyra85139;constitutive=1;rank=4 scaffold_144 . biological_region 61885 61886 0.999 + . logic_name=eponine scaffold_144 . repeat_region 62813 62831 . ? . description=dust scaffold_144 . repeat_region 63050 64471 . ? . description=dust scaffold_144 . repeat_region 66466 66846 . ? . description=dust scaffold_144 ensembl protein_coding_gene 59864 60334 . - . ID=Phyra85140;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_144000006;logic_name=jgi_phyra1 scaffold_144 ensembl transcript 59864 60334 . - . ID=Phyra85140;Parent=Phyra85140;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_144 . CDS 59864 59991 . - 0 ID=Phyra85140;Parent=Phyra85140;rank=3 scaffold_144 . exon 59864 59991 . - . ID=Phyra85140.3;Parent=Phyra85140;constitutive=1;ensembl_phase=1;rank=3 scaffold_144 . CDS 60071 60155 . - 0 ID=Phyra85140;Parent=Phyra85140;rank=2 scaffold_144 . exon 60071 60155 . - . ID=Phyra85140.2;Parent=Phyra85140;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_144 . CDS 60227 60334 . - 0 ID=Phyra85140;Parent=Phyra85140;rank=1 scaffold_144 . exon 60227 60334 . - . ID=Phyra85140.1;Parent=Phyra85140;constitutive=1;rank=1 scaffold_144 ensembl protein_coding_gene 64575 67317 . - . ID=Phyra85141;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_144000007;logic_name=jgi_phyra1 scaffold_144 ensembl transcript 64575 67317 . - . ID=Phyra85141;Parent=Phyra85141;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_144 . CDS 64575 64583 . - 0 ID=Phyra85141;Parent=Phyra85141;rank=5 scaffold_144 . exon 64575 64583 . - . ID=Phyra85141.5;Parent=Phyra85141;constitutive=1;rank=5 scaffold_144 . CDS 64615 65694 . - 0 ID=Phyra85141;Parent=Phyra85141;rank=4 scaffold_144 . exon 64615 65694 . - . ID=Phyra85141.4;Parent=Phyra85141;constitutive=1;rank=4 scaffold_144 . CDS 65764 65894 . - 0 ID=Phyra85141;Parent=Phyra85141;rank=3 scaffold_144 . exon 65764 65894 . - . ID=Phyra85141.3;Parent=Phyra85141;constitutive=1;ensembl_phase=1;rank=3 scaffold_144 . CDS 66057 66256 . - 0 ID=Phyra85141;Parent=Phyra85141;rank=2 scaffold_144 . exon 66057 66256 . - . ID=Phyra85141.2;Parent=Phyra85141;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_144 . CDS 66875 67317 . - 0 ID=Phyra85141;Parent=Phyra85141;rank=1 scaffold_144 . exon 66875 67317 . - . ID=Phyra85141.1;Parent=Phyra85141;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_144 ensembl protein_coding_gene 67424 69319 . - . ID=Phyra85142;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_144000008;logic_name=jgi_phyra1 scaffold_144 ensembl transcript 67424 69319 . - . ID=Phyra85142;Parent=Phyra85142;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_144 . CDS 67424 69319 . - 0 ID=Phyra85142;Parent=Phyra85142;rank=1 scaffold_144 . exon 67424 69319 . - . ID=Phyra85142.1;Parent=Phyra85142;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_143 1 75111 scaffold_143 . repeat_region 438 644 . + . description=GypsyPi-1c_I-int scaffold_143 . biological_region 1040 1043 0.999 + . logic_name=eponine scaffold_143 . biological_region 1146 1151 0.999 + . logic_name=eponine scaffold_143 . biological_region 1251 1254 0.999 - . logic_name=eponine scaffold_143 . repeat_region 1431 1529 . ? . description=dust scaffold_143 . biological_region 1737 1745 0.999 + . logic_name=eponine scaffold_143 . repeat_region 3193 3242 . ? . description=dust scaffold_143 . repeat_region 3827 3853 . ? . description=trf scaffold_143 . repeat_region 4246 7151 . ? . description=dust scaffold_143 . repeat_region 8232 30729 . ? . description=dust scaffold_143 ensembl protein_coding_gene 438 1942 . + . ID=Phyra85133;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_143000001;logic_name=jgi_phyra1 scaffold_143 ensembl transcript 438 1942 . + . ID=Phyra85133;Parent=Phyra85133;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_143 . CDS 438 1331 . + 0 ID=Phyra85133;Parent=Phyra85133;rank=1 scaffold_143 . exon 438 1331 . + . ID=Phyra85133.1;Parent=Phyra85133;constitutive=1;rank=1 scaffold_143 . CDS 1586 1942 . + 0 ID=Phyra85133;Parent=Phyra85133;rank=2 scaffold_143 . exon 1586 1942 . + . ID=Phyra85133.2;Parent=Phyra85133;constitutive=1;rank=2 scaffold_143 . repeat_region 8232 30729 . ? . description=dust scaffold_143 . biological_region 32832 32832 0.999 + . logic_name=eponine scaffold_143 . biological_region 32938 32940 0.999 - . logic_name=eponine scaffold_143 . repeat_region 34125 34149 . ? . description=trf scaffold_143 . repeat_region 39401 44099 . ? . description=dust scaffold_143 . repeat_region 46130 62209 . ? . description=dust scaffold_143 . repeat_region 46130 62209 . ? . description=dust scaffold_143 . repeat_region 64034 70291 . ? . description=dust scaffold_143 . biological_region 71513 71515 0.999 - . logic_name=eponine scaffold_143 . repeat_region 71800 71829 . ? . description=trf scaffold_143 . biological_region 73054 73056 0.999 + . logic_name=eponine scaffold_143 . biological_region 73187 73188 0.999 + . logic_name=eponine scaffold_143 . biological_region 73919 73927 0.999 - . logic_name=eponine scaffold_143 . repeat_region 73922 74000 . ? . description=trf scaffold_143 . biological_region 73952 73953 0.999 - . logic_name=eponine scaffold_143 . biological_region 74116 74121 0.999 - . logic_name=eponine scaffold_143 . repeat_region 74563 74862 . + . description=GypsyPi-1c_I-int scaffold_143 ensembl protein_coding_gene 72700 74880 . + . ID=Phyra85134;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_143000002;logic_name=jgi_phyra1 scaffold_143 ensembl transcript 72700 74880 . + . ID=Phyra85134;Parent=Phyra85134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_143 . CDS 72700 72745 . + 0 ID=Phyra85134;Parent=Phyra85134;rank=1 scaffold_143 . exon 72700 72745 . + . ID=Phyra85134.1;Parent=Phyra85134;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_143 . CDS 72812 73175 . + 0 ID=Phyra85134;Parent=Phyra85134;rank=2 scaffold_143 . exon 72812 73175 . + . ID=Phyra85134.2;Parent=Phyra85134;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_143 . CDS 73286 74709 . + 0 ID=Phyra85134;Parent=Phyra85134;rank=3 scaffold_143 . exon 73286 74709 . + . ID=Phyra85134.3;Parent=Phyra85134;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_143 . CDS 74735 74880 . + 0 ID=Phyra85134;Parent=Phyra85134;rank=4 scaffold_143 . exon 74735 74880 . + . ID=Phyra85134.4;Parent=Phyra85134;constitutive=1;ensembl_phase=1;rank=4 ##gff-version 3 ##sequence-region scaffold_142 1 76345 scaffold_142 . biological_region 2579 2584 0.999 + . logic_name=eponine scaffold_142 . biological_region 2752 2755 0.999 - . logic_name=eponine scaffold_142 . biological_region 2770 2771 0.999 - . logic_name=eponine scaffold_142 . biological_region 2804 2804 0.999 - . logic_name=eponine scaffold_142 . repeat_region 2874 2960 . ? . description=trf scaffold_142 . repeat_region 2936 2992 . ? . description=trf scaffold_142 . repeat_region 4549 4556 . ? . description=dust scaffold_142 . repeat_region 6515 6522 . ? . description=dust scaffold_142 . repeat_region 9512 9519 . ? . description=dust scaffold_142 ensembl protein_coding_gene 974 2177 . + . ID=Phyra41853;biotype=protein_coding;external_name=gwEuk.142.3.1;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 974 2177 . + . ID=Phyra41853;Parent=Phyra41853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 974 1072 . + 0 ID=Phyra41853;Parent=Phyra41853;rank=1 scaffold_142 . exon 974 1072 . + . ID=Phyra41853.1;Parent=Phyra41853;constitutive=1;rank=1 scaffold_142 . CDS 1149 1272 . + 0 ID=Phyra41853;Parent=Phyra41853;rank=2 scaffold_142 . exon 1149 1272 . + . ID=Phyra41853.2;Parent=Phyra41853;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_142 . CDS 1413 1656 . + 0 ID=Phyra41853;Parent=Phyra41853;rank=3 scaffold_142 . exon 1413 1656 . + . ID=Phyra41853.3;Parent=Phyra41853;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_142 . CDS 1714 1835 . + 0 ID=Phyra41853;Parent=Phyra41853;rank=4 scaffold_142 . exon 1714 1835 . + . ID=Phyra41853.4;Parent=Phyra41853;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_142 . CDS 1900 2177 . + 0 ID=Phyra41853;Parent=Phyra41853;rank=5 scaffold_142 . exon 1900 2177 . + . ID=Phyra41853.5;Parent=Phyra41853;constitutive=1;ensembl_phase=1;rank=5 scaffold_142 ensembl protein_coding_gene 8285 9281 . + . ID=Phyra41857;biotype=protein_coding;external_name=gwEuk.142.7.1;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 8285 9281 . + . ID=Phyra41857;Parent=Phyra41857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 8285 8344 . + 0 ID=Phyra41857;Parent=Phyra41857;rank=1 scaffold_142 . exon 8285 8344 . + . ID=Phyra41857.1;Parent=Phyra41857;constitutive=1;rank=1 scaffold_142 . CDS 8417 8477 . + 0 ID=Phyra41857;Parent=Phyra41857;rank=2 scaffold_142 . exon 8417 8477 . + . ID=Phyra41857.2;Parent=Phyra41857;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_142 . CDS 8569 8673 . + 0 ID=Phyra41857;Parent=Phyra41857;rank=3 scaffold_142 . exon 8569 8673 . + . ID=Phyra41857.3;Parent=Phyra41857;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_142 . CDS 8761 8810 . + 0 ID=Phyra41857;Parent=Phyra41857;rank=4 scaffold_142 . exon 8761 8810 . + . ID=Phyra41857.4;Parent=Phyra41857;constitutive=1;ensembl_phase=1;rank=4 scaffold_142 . CDS 8989 9063 . + 0 ID=Phyra41857;Parent=Phyra41857;rank=5 scaffold_142 . exon 8989 9063 . + . ID=Phyra41857.5;Parent=Phyra41857;constitutive=1;rank=5 scaffold_142 . CDS 9141 9281 . + 0 ID=Phyra41857;Parent=Phyra41857;rank=6 scaffold_142 . exon 9141 9281 . + . ID=Phyra41857.6;Parent=Phyra41857;constitutive=1;rank=6 scaffold_142 ensembl protein_coding_gene 21 507 . + . ID=Phyra85111;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_142000001;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 21 507 . + . ID=Phyra85111;Parent=Phyra85111;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 21 267 . + 0 ID=Phyra85111;Parent=Phyra85111;rank=1 scaffold_142 . exon 21 267 . + . ID=Phyra85111.1;Parent=Phyra85111;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_142 . CDS 347 507 . + 0 ID=Phyra85111;Parent=Phyra85111;rank=2 scaffold_142 . exon 347 507 . + . ID=Phyra85111.2;Parent=Phyra85111;constitutive=1;ensembl_phase=1;rank=2 scaffold_142 ensembl protein_coding_gene 2594 3753 . + . ID=Phyra85113;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_142000003;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 2594 3753 . + . ID=Phyra85113;Parent=Phyra85113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 2594 3677 . + 0 ID=Phyra85113;Parent=Phyra85113;rank=1 scaffold_142 . exon 2594 3677 . + . ID=Phyra85113.1;Parent=Phyra85113;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_142 . CDS 3698 3753 . + 0 ID=Phyra85113;Parent=Phyra85113;rank=2 scaffold_142 . exon 3698 3753 . + . ID=Phyra85113.2;Parent=Phyra85113;constitutive=1;ensembl_phase=1;rank=2 scaffold_142 ensembl protein_coding_gene 6595 8021 . - . ID=Phyra85114;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_142000004;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 6595 8021 . - . ID=Phyra85114;Parent=Phyra85114;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 6595 7881 . - 0 ID=Phyra85114;Parent=Phyra85114;rank=2 scaffold_142 . exon 6595 7881 . - . ID=Phyra85114.2;Parent=Phyra85114;constitutive=1;rank=2 scaffold_142 . CDS 7980 8021 . - 0 ID=Phyra85114;Parent=Phyra85114;rank=1 scaffold_142 . exon 7980 8021 . - . ID=Phyra85114.1;Parent=Phyra85114;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 18038 19030 . - . ID=Phyra41862;biotype=protein_coding;external_name=gwEuk.142.12.1;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 18038 19030 . - . ID=Phyra41862;Parent=Phyra41862;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 18038 18178 . - 0 ID=Phyra41862;Parent=Phyra41862;rank=6 scaffold_142 . exon 18038 18178 . - . ID=Phyra41862.6;Parent=Phyra41862;constitutive=1;rank=6 scaffold_142 . CDS 18252 18326 . - 0 ID=Phyra41862;Parent=Phyra41862;rank=5 scaffold_142 . exon 18252 18326 . - . ID=Phyra41862.5;Parent=Phyra41862;constitutive=1;rank=5 scaffold_142 . CDS 18505 18554 . - 0 ID=Phyra41862;Parent=Phyra41862;rank=4 scaffold_142 . exon 18505 18554 . - . ID=Phyra41862.4;Parent=Phyra41862;constitutive=1;ensembl_phase=1;rank=4 scaffold_142 . CDS 18642 18746 . - 0 ID=Phyra41862;Parent=Phyra41862;rank=3 scaffold_142 . exon 18642 18746 . - . ID=Phyra41862.3;Parent=Phyra41862;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_142 . CDS 18838 18898 . - 0 ID=Phyra41862;Parent=Phyra41862;rank=2 scaffold_142 . exon 18838 18898 . - . ID=Phyra41862.2;Parent=Phyra41862;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_142 . CDS 18971 19030 . - 0 ID=Phyra41862;Parent=Phyra41862;rank=1 scaffold_142 . exon 18971 19030 . - . ID=Phyra41862.1;Parent=Phyra41862;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 9558 11123 . + . ID=Phyra85116;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_142000006;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 9558 11123 . + . ID=Phyra85116;Parent=Phyra85116;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 9558 11123 . + 0 ID=Phyra85116;Parent=Phyra85116;rank=1 scaffold_142 . exon 9558 11123 . + . ID=Phyra85116.1;Parent=Phyra85116;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 11340 12988 . - . ID=Phyra85117;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_142000007;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 11340 12988 . - . ID=Phyra85117;Parent=Phyra85117;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 11340 11383 . - 0 ID=Phyra85117;Parent=Phyra85117;rank=4 scaffold_142 . exon 11340 11383 . - . ID=Phyra85117.4;Parent=Phyra85117;constitutive=1;ensembl_phase=1;rank=4 scaffold_142 . CDS 11416 11663 . - 0 ID=Phyra85117;Parent=Phyra85117;rank=3 scaffold_142 . exon 11416 11663 . - . ID=Phyra85117.3;Parent=Phyra85117;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_142 . CDS 11732 11781 . - 0 ID=Phyra85117;Parent=Phyra85117;rank=2 scaffold_142 . exon 11732 11781 . - . ID=Phyra85117.2;Parent=Phyra85117;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_142 . CDS 11867 12988 . - 0 ID=Phyra85117;Parent=Phyra85117;rank=1 scaffold_142 . exon 11867 12988 . - . ID=Phyra85117.1;Parent=Phyra85117;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 16226 17761 . - . ID=Phyra85118;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_142000008;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 16226 17761 . - . ID=Phyra85118;Parent=Phyra85118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 16226 17761 . - 0 ID=Phyra85118;Parent=Phyra85118;rank=1 scaffold_142 . exon 16226 17761 . - . ID=Phyra85118.1;Parent=Phyra85118;constitutive=1;rank=1 scaffold_142 . repeat_region 21372 21570 . ? . description=trf scaffold_142 . repeat_region 21532 21639 . ? . description=trf scaffold_142 . repeat_region 21558 21639 . ? . description=trf scaffold_142 . repeat_region 22273 22329 . ? . description=trf scaffold_142 . biological_region 26231 26232 0.999 + . logic_name=eponine scaffold_142 ensembl protein_coding_gene 19294 20591 . + . ID=Phyra85120;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_142000010;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 19294 20591 . + . ID=Phyra85120;Parent=Phyra85120;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 19294 19335 . + 0 ID=Phyra85120;Parent=Phyra85120;rank=1 scaffold_142 . exon 19294 19335 . + . ID=Phyra85120.1;Parent=Phyra85120;constitutive=1;rank=1 scaffold_142 . CDS 19434 20591 . + 0 ID=Phyra85120;Parent=Phyra85120;rank=2 scaffold_142 . exon 19434 20591 . + . ID=Phyra85120.2;Parent=Phyra85120;constitutive=1;rank=2 scaffold_142 ensembl protein_coding_gene 20893 24258 . - . ID=Phyra85121;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_142000011;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 20893 24258 . - . ID=Phyra85121;Parent=Phyra85121;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 20893 24258 . - 0 ID=Phyra85121;Parent=Phyra85121;rank=1 scaffold_142 . exon 20893 24258 . - . ID=Phyra85121.1;Parent=Phyra85121;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 24863 26348 . - . ID=Phyra85122;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_142000012;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 24863 26348 . - . ID=Phyra85122;Parent=Phyra85122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 24863 25870 . - 0 ID=Phyra85122;Parent=Phyra85122;rank=4 scaffold_142 . exon 24863 25870 . - . ID=Phyra85122.4;Parent=Phyra85122;constitutive=1;rank=4 scaffold_142 . CDS 25941 26046 . - 0 ID=Phyra85122;Parent=Phyra85122;rank=3 scaffold_142 . exon 25941 26046 . - . ID=Phyra85122.3;Parent=Phyra85122;constitutive=1;ensembl_phase=2;rank=3 scaffold_142 . CDS 26111 26150 . - 0 ID=Phyra85122;Parent=Phyra85122;rank=2 scaffold_142 . exon 26111 26150 . - . ID=Phyra85122.2;Parent=Phyra85122;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_142 . CDS 26174 26348 . - 0 ID=Phyra85122;Parent=Phyra85122;rank=1 scaffold_142 . exon 26174 26348 . - . ID=Phyra85122.1;Parent=Phyra85122;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_142 ensembl protein_coding_gene 27413 29135 . - . ID=Phyra85123;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_142000013;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 27413 29135 . - . ID=Phyra85123;Parent=Phyra85123;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 27413 28176 . - 0 ID=Phyra85123;Parent=Phyra85123;rank=3 scaffold_142 . exon 27413 28176 . - . ID=Phyra85123.3;Parent=Phyra85123;constitutive=1;ensembl_phase=1;rank=3 scaffold_142 . CDS 28339 28561 . - 0 ID=Phyra85123;Parent=Phyra85123;rank=2 scaffold_142 . exon 28339 28561 . - . ID=Phyra85123.2;Parent=Phyra85123;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_142 . CDS 28626 29135 . - 0 ID=Phyra85123;Parent=Phyra85123;rank=1 scaffold_142 . exon 28626 29135 . - . ID=Phyra85123.1;Parent=Phyra85123;constitutive=1;rank=1 scaffold_142 . repeat_region 30796 30821 . ? . description=dust scaffold_142 . repeat_region 32594 32899 . - . description=GypsyPi-1c_LTR scaffold_142 . repeat_region 34186 34267 . - . description=GypsyPi-1c_I-int scaffold_142 . repeat_region 34421 34614 . - . description=GypsyPi-1c_I-int scaffold_142 . repeat_region 34876 37099 . - . description=GypsyPi-1c_I-int scaffold_142 . repeat_region 37100 37405 . - . description=GypsyPi-1c_LTR scaffold_142 ensembl protein_coding_gene 36604 37073 . - . ID=Phyra85124;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_142000014;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 36604 37073 . - . ID=Phyra85124;Parent=Phyra85124;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 36604 36973 . - 0 ID=Phyra85124;Parent=Phyra85124;rank=2 scaffold_142 . exon 36604 36973 . - . ID=Phyra85124.2;Parent=Phyra85124;constitutive=1;ensembl_phase=2;rank=2 scaffold_142 . CDS 37003 37073 . - 0 ID=Phyra85124;Parent=Phyra85124;rank=1 scaffold_142 . exon 37003 37073 . - . ID=Phyra85124.1;Parent=Phyra85124;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_142 ensembl protein_coding_gene 37956 39206 . + . ID=Phyra85125;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_142000015;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 37956 39206 . + . ID=Phyra85125;Parent=Phyra85125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 37956 39206 . + 0 ID=Phyra85125;Parent=Phyra85125;rank=1 scaffold_142 . exon 37956 39206 . + . ID=Phyra85125.1;Parent=Phyra85125;constitutive=1;rank=1 scaffold_142 . biological_region 38189 38192 0.999 - . logic_name=eponine scaffold_142 . biological_region 38227 38228 0.999 - . logic_name=eponine scaffold_142 . biological_region 43511 43512 0.999 - . logic_name=eponine scaffold_142 . biological_region 44510 44513 0.999 - . logic_name=eponine scaffold_142 ensembl protein_coding_gene 46329 48246 . - . ID=Phyra72303;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_142000001;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 46329 48246 . - . ID=Phyra72303;Parent=Phyra72303;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 46329 46370 . - 0 ID=Phyra72303;Parent=Phyra72303;rank=7 scaffold_142 . exon 46329 46370 . - . ID=Phyra72303.7;Parent=Phyra72303;constitutive=1;rank=7 scaffold_142 . CDS 46400 46681 . - 0 ID=Phyra72303;Parent=Phyra72303;rank=6 scaffold_142 . exon 46400 46681 . - . ID=Phyra72303.6;Parent=Phyra72303;constitutive=1;rank=6 scaffold_142 . CDS 46762 46899 . - 0 ID=Phyra72303;Parent=Phyra72303;rank=5 scaffold_142 . exon 46762 46899 . - . ID=Phyra72303.5;Parent=Phyra72303;constitutive=1;rank=5 scaffold_142 . CDS 46970 47491 . - 0 ID=Phyra72303;Parent=Phyra72303;rank=4 scaffold_142 . exon 46970 47491 . - . ID=Phyra72303.4;Parent=Phyra72303;constitutive=1;rank=4 scaffold_142 . CDS 47551 47961 . - 0 ID=Phyra72303;Parent=Phyra72303;rank=3 scaffold_142 . exon 47551 47961 . - . ID=Phyra72303.3;Parent=Phyra72303;constitutive=1;rank=3 scaffold_142 . CDS 48043 48098 . - 0 ID=Phyra72303;Parent=Phyra72303;rank=2 scaffold_142 . CDS 48171 48246 . - 0 ID=Phyra72303;Parent=Phyra72303;rank=1 scaffold_142 ensembl protein_coding_gene 39239 44331 . - . ID=Phyra97058;biotype=protein_coding;external_name=C_scaffold_142000002;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 39239 44331 . - . ID=Phyra97058;Parent=Phyra97058;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 39239 39318 . - 0 ID=Phyra97058;Parent=Phyra97058;rank=13 scaffold_142 . exon 39239 39318 . - . ID=Phyra97058.13;Parent=Phyra97058;constitutive=1;ensembl_phase=1;rank=13 scaffold_142 . CDS 39422 39476 . - 0 ID=Phyra97058;Parent=Phyra97058;rank=12 scaffold_142 . exon 39422 39476 . - . ID=Phyra97058.12;Parent=Phyra97058;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_142 . CDS 39545 39637 . - 0 ID=Phyra97058;Parent=Phyra97058;rank=11 scaffold_142 . exon 39545 39637 . - . ID=Phyra97058.11;Parent=Phyra97058;constitutive=1;rank=11 scaffold_142 . CDS 39714 40003 . - 0 ID=Phyra97058;Parent=Phyra97058;rank=10 scaffold_142 . exon 39714 40003 . - . ID=Phyra97058.10;Parent=Phyra97058;constitutive=1;ensembl_phase=1;rank=10 scaffold_142 . CDS 40112 40435 . - 0 ID=Phyra97058;Parent=Phyra97058;rank=9 scaffold_142 . exon 40112 40435 . - . ID=Phyra97058.9;Parent=Phyra97058;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_142 . CDS 40910 41756 . - 0 ID=Phyra97058;Parent=Phyra97058;rank=8 scaffold_142 . exon 40910 41756 . - . ID=Phyra97058.8;Parent=Phyra97058;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_142 . CDS 41847 41924 . - 0 ID=Phyra97058;Parent=Phyra97058;rank=7 scaffold_142 . exon 41847 41924 . - . ID=Phyra97058.7;Parent=Phyra97058;constitutive=1;rank=7 scaffold_142 . CDS 42021 42238 . - 0 ID=Phyra97058;Parent=Phyra97058;rank=6 scaffold_142 . exon 42021 42238 . - . ID=Phyra97058.6;Parent=Phyra97058;constitutive=1;ensembl_phase=1;rank=6 scaffold_142 . CDS 42306 43198 . - 0 ID=Phyra97058;Parent=Phyra97058;rank=5 scaffold_142 . exon 42306 43198 . - . ID=Phyra97058.5;Parent=Phyra97058;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_142 . CDS 43272 43577 . - 0 ID=Phyra97058;Parent=Phyra97058;rank=4 scaffold_142 . exon 43272 43577 . - . ID=Phyra97058.4;Parent=Phyra97058;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_142 . CDS 43650 43759 . - 0 ID=Phyra97058;Parent=Phyra97058;rank=3 scaffold_142 . exon 43650 43759 . - . ID=Phyra97058.3;Parent=Phyra97058;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_142 . CDS 44068 44159 . - 0 ID=Phyra97058;Parent=Phyra97058;rank=2 scaffold_142 . exon 44068 44159 . - . ID=Phyra97058.2;Parent=Phyra97058;constitutive=1;ensembl_phase=1;rank=2 scaffold_142 . CDS 44259 44331 . - 0 ID=Phyra97058;Parent=Phyra97058;rank=1 scaffold_142 . exon 44259 44331 . - . ID=Phyra97058.1;Parent=Phyra97058;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_142 ensembl protein_coding_gene 44706 45572 . + . ID=Phyra97061;biotype=protein_coding;external_name=C_scaffold_142000005;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 44706 45572 . + . ID=Phyra97061;Parent=Phyra97061;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 44706 44801 . + 0 ID=Phyra97061;Parent=Phyra97061;rank=1 scaffold_142 . exon 44706 44801 . + . ID=Phyra97061.1;Parent=Phyra97061;constitutive=1;rank=1 scaffold_142 . CDS 44857 44933 . + 0 ID=Phyra97061;Parent=Phyra97061;rank=2 scaffold_142 . exon 44857 44933 . + . ID=Phyra97061.2;Parent=Phyra97061;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_142 . CDS 45007 45083 . + 0 ID=Phyra97061;Parent=Phyra97061;rank=3 scaffold_142 . exon 45007 45083 . + . ID=Phyra97061.3;Parent=Phyra97061;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_142 . CDS 45198 45517 . + 0 ID=Phyra97061;Parent=Phyra97061;rank=4 scaffold_142 . exon 45198 45517 . + . ID=Phyra97061.4;Parent=Phyra97061;constitutive=1;ensembl_phase=1;rank=4 scaffold_142 . CDS 45564 45572 . + 0 ID=Phyra97061;Parent=Phyra97061;rank=5 scaffold_142 . exon 45564 45572 . + . ID=Phyra97061.5;Parent=Phyra97061;constitutive=1;rank=5 scaffold_142 . repeat_region 53802 67773 . ? . description=dust scaffold_142 . exon 48043 48098 . - . ID=Phyra72303.2;Parent=Phyra72303;constitutive=1;ensembl_phase=1;rank=2 scaffold_142 . exon 48171 48246 . - . ID=Phyra72303.1;Parent=Phyra72303;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_142 ensembl protein_coding_gene 48476 49424 . - . ID=Phyra85129;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_142000019;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 48476 49424 . - . ID=Phyra85129;Parent=Phyra85129;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 48476 48833 . - 0 ID=Phyra85129;Parent=Phyra85129;rank=4 scaffold_142 . exon 48476 48833 . - . ID=Phyra85129.4;Parent=Phyra85129;constitutive=1;ensembl_phase=2;rank=4 scaffold_142 . CDS 48956 49075 . - 0 ID=Phyra85129;Parent=Phyra85129;rank=3 scaffold_142 . exon 48956 49075 . - . ID=Phyra85129.3;Parent=Phyra85129;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_142 . CDS 49162 49292 . - 0 ID=Phyra85129;Parent=Phyra85129;rank=2 scaffold_142 . exon 49162 49292 . - . ID=Phyra85129.2;Parent=Phyra85129;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_142 . CDS 49368 49424 . - 0 ID=Phyra85129;Parent=Phyra85129;rank=1 scaffold_142 . exon 49368 49424 . - . ID=Phyra85129.1;Parent=Phyra85129;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 50304 51258 . + . ID=Phyra85130;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_142000020;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 50304 51258 . + . ID=Phyra85130;Parent=Phyra85130;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 50304 50471 . + 0 ID=Phyra85130;Parent=Phyra85130;rank=1 scaffold_142 . exon 50304 50471 . + . ID=Phyra85130.1;Parent=Phyra85130;constitutive=1;rank=1 scaffold_142 . CDS 50543 51151 . + 0 ID=Phyra85130;Parent=Phyra85130;rank=2 scaffold_142 . exon 50543 51151 . + . ID=Phyra85130.2;Parent=Phyra85130;constitutive=1;rank=2 scaffold_142 . CDS 51229 51258 . + 0 ID=Phyra85130;Parent=Phyra85130;rank=3 scaffold_142 . exon 51229 51258 . + . ID=Phyra85130.3;Parent=Phyra85130;constitutive=1;rank=3 scaffold_142 ensembl protein_coding_gene 51432 52634 . - . ID=Phyra85131;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_142000021;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 51432 52634 . - . ID=Phyra85131;Parent=Phyra85131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 51432 51450 . - 0 ID=Phyra85131;Parent=Phyra85131;rank=4 scaffold_142 . exon 51432 51450 . - . ID=Phyra85131.4;Parent=Phyra85131;constitutive=1;ensembl_phase=2;rank=4 scaffold_142 . CDS 51533 52020 . - 0 ID=Phyra85131;Parent=Phyra85131;rank=3 scaffold_142 . exon 51533 52020 . - . ID=Phyra85131.3;Parent=Phyra85131;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_142 . CDS 52059 52128 . - 0 ID=Phyra85131;Parent=Phyra85131;rank=2 scaffold_142 . exon 52059 52128 . - . ID=Phyra85131.2;Parent=Phyra85131;constitutive=1;ensembl_phase=2;rank=2 scaffold_142 . CDS 52285 52634 . - 0 ID=Phyra85131;Parent=Phyra85131;rank=1 scaffold_142 . exon 52285 52634 . - . ID=Phyra85131.1;Parent=Phyra85131;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_142 ensembl protein_coding_gene 52952 53682 . - . ID=Phyra85132;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_142000022;logic_name=jgi_phyra1 scaffold_142 ensembl transcript 52952 53682 . - . ID=Phyra85132;Parent=Phyra85132;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_142 . CDS 52952 53030 . - 0 ID=Phyra85132;Parent=Phyra85132;rank=4 scaffold_142 . exon 52952 53030 . - . ID=Phyra85132.4;Parent=Phyra85132;constitutive=1;ensembl_phase=2;rank=4 scaffold_142 . CDS 53101 53323 . - 0 ID=Phyra85132;Parent=Phyra85132;rank=3 scaffold_142 . exon 53101 53323 . - . ID=Phyra85132.3;Parent=Phyra85132;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_142 . CDS 53393 53542 . - 0 ID=Phyra85132;Parent=Phyra85132;rank=2 scaffold_142 . exon 53393 53542 . - . ID=Phyra85132.2;Parent=Phyra85132;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_142 . CDS 53601 53682 . - 0 ID=Phyra85132;Parent=Phyra85132;rank=1 scaffold_142 . exon 53601 53682 . - . ID=Phyra85132.1;Parent=Phyra85132;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_142 . repeat_region 53802 67773 . ? . description=dust scaffold_142 . repeat_region 68101 68156 . ? . description=dust scaffold_142 . repeat_region 69141 74724 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_141 1 77783 scaffold_141 . biological_region 4959 4965 0.999 + . logic_name=eponine scaffold_141 . repeat_region 5080 5089 . ? . description=dust scaffold_141 . biological_region 5490 5491 0.999 - . logic_name=eponine scaffold_141 . biological_region 8292 8297 0.999 + . logic_name=eponine scaffold_141 . repeat_region 9659 9708 . ? . description=dust scaffold_141 ensembl protein_coding_gene 763 1632 . - . ID=Phyra85092;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_141000001;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 763 1632 . - . ID=Phyra85092;Parent=Phyra85092;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 763 1632 . - 0 ID=Phyra85092;Parent=Phyra85092;rank=1 scaffold_141 . exon 763 1632 . - . ID=Phyra85092.1;Parent=Phyra85092;constitutive=1;rank=1 scaffold_141 ensembl protein_coding_gene 5985 7070 . + . ID=Phyra85094;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_141000003;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 5985 7070 . + . ID=Phyra85094;Parent=Phyra85094;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 5985 7070 . + 0 ID=Phyra85094;Parent=Phyra85094;rank=1 scaffold_141 . exon 5985 7070 . + . ID=Phyra85094.1;Parent=Phyra85094;constitutive=1;rank=1 scaffold_141 ensembl protein_coding_gene 8028 8366 . - . ID=Phyra85095;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_141000004;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 8028 8366 . - . ID=Phyra85095;Parent=Phyra85095;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 8028 8366 . - 0 ID=Phyra85095;Parent=Phyra85095;rank=1 scaffold_141 . exon 8028 8366 . - . ID=Phyra85095.1;Parent=Phyra85095;constitutive=1;rank=1 scaffold_141 ensembl protein_coding_gene 1779 2676 . + . ID=Phyra97051;biotype=protein_coding;external_name=C_scaffold_141000002;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 1779 2676 . + . ID=Phyra97051;Parent=Phyra97051;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 1779 1850 . + 0 ID=Phyra97051;Parent=Phyra97051;rank=1 scaffold_141 . exon 1779 1850 . + . ID=Phyra97051.1;Parent=Phyra97051;constitutive=1;rank=1 scaffold_141 . CDS 1930 2676 . + 0 ID=Phyra97051;Parent=Phyra97051;rank=2 scaffold_141 . exon 1930 2676 . + . ID=Phyra97051.2;Parent=Phyra97051;constitutive=1;rank=2 scaffold_141 . repeat_region 14962 15007 . ? . description=trf scaffold_141 ensembl protein_coding_gene 11589 12185 . + . ID=Phyra85096;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_141000005;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 11589 12185 . + . ID=Phyra85096;Parent=Phyra85096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 11589 12185 . + 0 ID=Phyra85096;Parent=Phyra85096;rank=1 scaffold_141 . exon 11589 12185 . + . ID=Phyra85096.1;Parent=Phyra85096;constitutive=1;rank=1 scaffold_141 ensembl protein_coding_gene 12484 12852 . - . ID=Phyra85097;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_141000006;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 12484 12852 . - . ID=Phyra85097;Parent=Phyra85097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 12484 12852 . - 0 ID=Phyra85097;Parent=Phyra85097;rank=1 scaffold_141 . exon 12484 12852 . - . ID=Phyra85097.1;Parent=Phyra85097;constitutive=1;rank=1 scaffold_141 ensembl protein_coding_gene 14157 15236 . + . ID=Phyra85098;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_141000007;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 14157 15236 . + . ID=Phyra85098;Parent=Phyra85098;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 14157 15236 . + 0 ID=Phyra85098;Parent=Phyra85098;rank=1 scaffold_141 . exon 14157 15236 . + . ID=Phyra85098.1;Parent=Phyra85098;constitutive=1;rank=1 scaffold_141 ensembl protein_coding_gene 15602 16744 . - . ID=Phyra85099;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_141000008;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 15602 16744 . - . ID=Phyra85099;Parent=Phyra85099;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 15602 16744 . - 0 ID=Phyra85099;Parent=Phyra85099;rank=1 scaffold_141 . exon 15602 16744 . - . ID=Phyra85099.1;Parent=Phyra85099;constitutive=1;rank=1 scaffold_141 . repeat_region 18100 20487 . ? . description=dust scaffold_141 . biological_region 23101 23106 0.999 + . logic_name=eponine scaffold_141 . biological_region 23554 23556 0.999 - . logic_name=eponine scaffold_141 . repeat_region 23952 29488 . ? . description=dust scaffold_141 ensembl protein_coding_gene 20609 20977 . + . ID=Phyra85100;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_141000009;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 20609 20977 . + . ID=Phyra85100;Parent=Phyra85100;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 20609 20977 . + 0 ID=Phyra85100;Parent=Phyra85100;rank=1 scaffold_141 . exon 20609 20977 . + . ID=Phyra85100.1;Parent=Phyra85100;constitutive=1;rank=1 scaffold_141 ensembl protein_coding_gene 21276 23243 . - . ID=Phyra85101;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_141000010;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 21276 23243 . - . ID=Phyra85101;Parent=Phyra85101;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 21276 23243 . - 0 ID=Phyra85101;Parent=Phyra85101;rank=1 scaffold_141 . exon 21276 23243 . - . ID=Phyra85101.1;Parent=Phyra85101;constitutive=1;rank=1 scaffold_141 . repeat_region 32406 32451 . ? . description=trf scaffold_141 ensembl protein_coding_gene 33168 35837 . + . ID=Phyra85102;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_141000011;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 33168 35837 . + . ID=Phyra85102;Parent=Phyra85102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 33168 34893 . + 0 ID=Phyra85102;Parent=Phyra85102;rank=1 scaffold_141 . exon 33168 34893 . + . ID=Phyra85102.1;Parent=Phyra85102;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_141 . CDS 35095 35837 . + 0 ID=Phyra85102;Parent=Phyra85102;rank=2 scaffold_141 . exon 35095 35837 . + . ID=Phyra85102.2;Parent=Phyra85102;constitutive=1;ensembl_phase=1;rank=2 scaffold_141 ensembl protein_coding_gene 36074 38588 . + . ID=Phyra85103;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_141000012;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 36074 38588 . + . ID=Phyra85103;Parent=Phyra85103;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 36074 36303 . + 0 ID=Phyra85103;Parent=Phyra85103;rank=1 scaffold_141 . exon 36074 36303 . + . ID=Phyra85103.1;Parent=Phyra85103;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_141 . CDS 36357 36447 . + 0 ID=Phyra85103;Parent=Phyra85103;rank=2 scaffold_141 . exon 36357 36447 . + . ID=Phyra85103.2;Parent=Phyra85103;constitutive=1;ensembl_phase=2;rank=2 scaffold_141 . CDS 36512 36610 . + 0 ID=Phyra85103;Parent=Phyra85103;rank=3 scaffold_141 . exon 36512 36610 . + . ID=Phyra85103.3;Parent=Phyra85103;constitutive=1;rank=3 scaffold_141 . CDS 36693 36809 . + 0 ID=Phyra85103;Parent=Phyra85103;rank=4 scaffold_141 . exon 36693 36809 . + . ID=Phyra85103.4;Parent=Phyra85103;constitutive=1;rank=4 scaffold_141 . CDS 36887 37422 . + 0 ID=Phyra85103;Parent=Phyra85103;rank=5 scaffold_141 . exon 36887 37422 . + . ID=Phyra85103.5;Parent=Phyra85103;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_141 . CDS 37570 37636 . + 0 ID=Phyra85103;Parent=Phyra85103;rank=6 scaffold_141 . exon 37570 37636 . + . ID=Phyra85103.6;Parent=Phyra85103;constitutive=1;ensembl_phase=2;rank=6 scaffold_141 . CDS 37694 37855 . + 0 ID=Phyra85103;Parent=Phyra85103;rank=7 scaffold_141 . exon 37694 37855 . + . ID=Phyra85103.7;Parent=Phyra85103;constitutive=1;rank=7 scaffold_141 . CDS 37929 38012 . + 0 ID=Phyra85103;Parent=Phyra85103;rank=8 scaffold_141 . exon 37929 38012 . + . ID=Phyra85103.8;Parent=Phyra85103;constitutive=1;rank=8 scaffold_141 . CDS 38073 38588 . + 0 ID=Phyra85103;Parent=Phyra85103;rank=9 scaffold_141 . exon 38073 38588 . + . ID=Phyra85103.9;Parent=Phyra85103;constitutive=1;rank=9 scaffold_141 . biological_region 39444 39446 0.999 - . logic_name=eponine scaffold_141 . biological_region 39944 39944 0.999 + . logic_name=eponine scaffold_141 . biological_region 40305 40305 0.999 + . logic_name=eponine scaffold_141 . biological_region 42022 42027 0.999 + . logic_name=eponine scaffold_141 . biological_region 43425 43427 0.999 + . logic_name=eponine scaffold_141 . biological_region 43470 43474 0.999 - . logic_name=eponine scaffold_141 . biological_region 43489 43493 0.999 + . logic_name=eponine scaffold_141 . biological_region 43506 43512 0.999 + . logic_name=eponine scaffold_141 . biological_region 44694 44696 0.999 - . logic_name=eponine scaffold_141 . biological_region 46412 46415 0.999 + . logic_name=eponine scaffold_141 . biological_region 46473 46477 0.999 - . logic_name=eponine scaffold_141 . biological_region 46477 46478 0.999 + . logic_name=eponine scaffold_141 . biological_region 46528 46532 0.999 + . logic_name=eponine scaffold_141 . biological_region 46594 46599 0.999 + . logic_name=eponine scaffold_141 . biological_region 46661 46666 0.999 - . logic_name=eponine scaffold_141 . repeat_region 47174 47230 . ? . description=dust scaffold_141 . biological_region 47321 47324 0.999 + . logic_name=eponine scaffold_141 . biological_region 47452 47460 0.999 - . logic_name=eponine scaffold_141 . biological_region 47738 47741 0.999 + . logic_name=eponine scaffold_141 ensembl protein_coding_gene 38995 39234 . - . ID=Phyra41802;biotype=protein_coding;external_name=gwEuk.141.4.1;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 38995 39234 . - . ID=Phyra41802;Parent=Phyra41802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 38995 39040 . - 0 ID=Phyra41802;Parent=Phyra41802;rank=2 scaffold_141 . exon 38995 39040 . - . ID=Phyra41802.2;Parent=Phyra41802;constitutive=1;ensembl_phase=2;rank=2 scaffold_141 . CDS 39128 39234 . - 0 ID=Phyra41802;Parent=Phyra41802;rank=1 scaffold_141 . exon 39128 39234 . - . ID=Phyra41802.1;Parent=Phyra41802;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_141 ensembl protein_coding_gene 39949 43684 . + . ID=Phyra85104;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_141000013;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 39949 43684 . + . ID=Phyra85104;Parent=Phyra85104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 39949 42159 . + 0 ID=Phyra85104;Parent=Phyra85104;rank=1 scaffold_141 . exon 39949 42159 . + . ID=Phyra85104.1;Parent=Phyra85104;constitutive=1;rank=1 scaffold_141 . CDS 42191 43684 . + 0 ID=Phyra85104;Parent=Phyra85104;rank=2 scaffold_141 . exon 42191 43684 . + . ID=Phyra85104.2;Parent=Phyra85104;constitutive=1;rank=2 scaffold_141 ensembl protein_coding_gene 44260 45339 . + . ID=Phyra85105;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_141000014;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 44260 45339 . + . ID=Phyra85105;Parent=Phyra85105;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 44260 45339 . + 0 ID=Phyra85105;Parent=Phyra85105;rank=1 scaffold_141 . exon 44260 45339 . + . ID=Phyra85105.1;Parent=Phyra85105;constitutive=1;rank=1 scaffold_141 ensembl protein_coding_gene 45639 47648 . - . ID=Phyra85106;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_141000015;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 45639 47648 . - . ID=Phyra85106;Parent=Phyra85106;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 45639 47648 . - 0 ID=Phyra85106;Parent=Phyra85106;rank=1 scaffold_141 . exon 45639 47648 . - . ID=Phyra85106.1;Parent=Phyra85106;constitutive=1;rank=1 scaffold_141 . repeat_region 53139 53160 . ? . description=trf scaffold_141 ensembl protein_coding_gene 49783 50199 . - . ID=Phyra41806;biotype=protein_coding;external_name=gwEuk.141.8.1;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 49783 50199 . - . ID=Phyra41806;Parent=Phyra41806;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 49783 49963 . - 0 ID=Phyra41806;Parent=Phyra41806;rank=2 scaffold_141 . exon 49783 49963 . - . ID=Phyra41806.2;Parent=Phyra41806;constitutive=1;ensembl_phase=2;rank=2 scaffold_141 . CDS 50078 50199 . - 0 ID=Phyra41806;Parent=Phyra41806;rank=1 scaffold_141 . exon 50078 50199 . - . ID=Phyra41806.1;Parent=Phyra41806;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_141 ensembl protein_coding_gene 50781 50957 . - . ID=Phyra41809;biotype=protein_coding;external_name=gwEuk.141.11.1;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 50781 50957 . - . ID=Phyra41809;Parent=Phyra41809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 50781 50957 . - 0 ID=Phyra41809;Parent=Phyra41809;rank=1 scaffold_141 . exon 50781 50957 . - . ID=Phyra41809.1;Parent=Phyra41809;constitutive=1;rank=1 scaffold_141 ensembl protein_coding_gene 51346 52385 . + . ID=Phyra85108;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_141000017;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 51346 52385 . + . ID=Phyra85108;Parent=Phyra85108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 51346 51468 . + 0 ID=Phyra85108;Parent=Phyra85108;rank=1 scaffold_141 . exon 51346 51468 . + . ID=Phyra85108.1;Parent=Phyra85108;constitutive=1;rank=1 scaffold_141 . CDS 51534 51900 . + 0 ID=Phyra85108;Parent=Phyra85108;rank=2 scaffold_141 . exon 51534 51900 . + . ID=Phyra85108.2;Parent=Phyra85108;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_141 . CDS 51979 52073 . + 0 ID=Phyra85108;Parent=Phyra85108;rank=3 scaffold_141 . exon 51979 52073 . + . ID=Phyra85108.3;Parent=Phyra85108;constitutive=1;ensembl_phase=1;rank=3 scaffold_141 . CDS 52146 52385 . + 0 ID=Phyra85108;Parent=Phyra85108;rank=4 scaffold_141 . exon 52146 52385 . + . ID=Phyra85108.4;Parent=Phyra85108;constitutive=1;rank=4 scaffold_141 ensembl protein_coding_gene 56153 58672 . + . ID=Phyra85109;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_141000018;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 56153 58672 . + . ID=Phyra85109;Parent=Phyra85109;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 56153 58672 . + 0 ID=Phyra85109;Parent=Phyra85109;rank=1 scaffold_141 . exon 56153 58672 . + . ID=Phyra85109.1;Parent=Phyra85109;constitutive=1;rank=1 scaffold_141 . biological_region 60970 60970 0.999 + . logic_name=eponine scaffold_141 . biological_region 61903 61906 0.999 + . logic_name=eponine scaffold_141 . repeat_region 62491 75961 . ? . description=dust scaffold_141 ensembl protein_coding_gene 59792 61627 . - . ID=Phyra85110;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_141000019;logic_name=jgi_phyra1 scaffold_141 ensembl transcript 59792 61627 . - . ID=Phyra85110;Parent=Phyra85110;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_141 . CDS 59792 61627 . - 0 ID=Phyra85110;Parent=Phyra85110;rank=1 scaffold_141 . exon 59792 61627 . - . ID=Phyra85110.1;Parent=Phyra85110;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_140 1 80602 scaffold_140 . repeat_region 7598 7606 . ? . description=dust scaffold_140 ensembl pseudogene 5122 5746 . - . ID=Phyra41766;biotype=pseudogene;external_name=gwEuk.140.5.1;logic_name=jgi_phyra1 scaffold_140 ensembl pseudogene 5122 5746 . - . ID=Phyra41766;Parent=Phyra41766;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_140 . exon 5122 5746 . - . ID=Phyra41766.1;Parent=Phyra41766;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_140 . repeat_region 9663 9686 . ? . description=trf scaffold_140 ensembl protein_coding_gene 11309 14090 . + . ID=Phyra41772;biotype=protein_coding;external_name=gwEuk.140.11.1;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 11309 14090 . + . ID=Phyra41772;Parent=Phyra41772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 11309 11393 . + 0 ID=Phyra41772;Parent=Phyra41772;rank=1 scaffold_140 . exon 11309 11393 . + . ID=Phyra41772.1;Parent=Phyra41772;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_140 . CDS 13855 14090 . + 0 ID=Phyra41772;Parent=Phyra41772;rank=2 scaffold_140 . exon 13855 14090 . + . ID=Phyra41772.2;Parent=Phyra41772;constitutive=1;ensembl_phase=1;rank=2 scaffold_140 ensembl protein_coding_gene 9708 10878 . + . ID=Phyra85072;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000002;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 9708 10878 . + . ID=Phyra85072;Parent=Phyra85072;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 9708 9773 . + 0 ID=Phyra85072;Parent=Phyra85072;rank=1 scaffold_140 . exon 9708 9773 . + . ID=Phyra85072.1;Parent=Phyra85072;constitutive=1;rank=1 scaffold_140 . CDS 9844 9900 . + 0 ID=Phyra85072;Parent=Phyra85072;rank=2 scaffold_140 . exon 9844 9900 . + . ID=Phyra85072.2;Parent=Phyra85072;constitutive=1;rank=2 scaffold_140 . CDS 9973 10878 . + 0 ID=Phyra85072;Parent=Phyra85072;rank=3 scaffold_140 . exon 9973 10878 . + . ID=Phyra85072.3;Parent=Phyra85072;constitutive=1;rank=3 scaffold_140 ensembl protein_coding_gene 15309 16187 . - . ID=Phyra85073;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000003;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 15309 16187 . - . ID=Phyra85073;Parent=Phyra85073;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 15309 16187 . - 0 ID=Phyra85073;Parent=Phyra85073;rank=1 scaffold_140 . exon 15309 16187 . - . ID=Phyra85073.1;Parent=Phyra85073;constitutive=1;rank=1 scaffold_140 ensembl protein_coding_gene 17391 18269 . - . ID=Phyra85074;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000004;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 17391 18269 . - . ID=Phyra85074;Parent=Phyra85074;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 17391 18269 . - 0 ID=Phyra85074;Parent=Phyra85074;rank=1 scaffold_140 . exon 17391 18269 . - . ID=Phyra85074.1;Parent=Phyra85074;constitutive=1;rank=1 scaffold_140 . biological_region 23344 23346 0.999 - . logic_name=eponine scaffold_140 . biological_region 23401 23401 0.999 + . logic_name=eponine scaffold_140 ensembl protein_coding_gene 22053 22787 . - . ID=Phyra41777;biotype=protein_coding;external_name=gwEuk.140.16.1;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 22053 22787 . - . ID=Phyra41777;Parent=Phyra41777;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 22053 22787 . - 0 ID=Phyra41777;Parent=Phyra41777;rank=1 scaffold_140 . exon 22053 22787 . - . ID=Phyra41777.1;Parent=Phyra41777;constitutive=1;rank=1 scaffold_140 ensembl protein_coding_gene 24873 32138 . - . ID=Phyra85076;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000006;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 24873 32138 . - . ID=Phyra85076;Parent=Phyra85076;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 24873 25790 . - 0 ID=Phyra85076;Parent=Phyra85076;rank=3 scaffold_140 . exon 24873 25790 . - . ID=Phyra85076.3;Parent=Phyra85076;constitutive=1;rank=3 scaffold_140 . CDS 25981 29348 . - 0 ID=Phyra85076;Parent=Phyra85076;rank=2 scaffold_140 . exon 25981 29348 . - . ID=Phyra85076.2;Parent=Phyra85076;constitutive=1;ensembl_phase=1;rank=2 scaffold_140 . CDS 29729 32138 . - 0 ID=Phyra85076;Parent=Phyra85076;rank=1 scaffold_140 . repeat_region 32498 32505 . ? . description=dust scaffold_140 . repeat_region 34742 34779 . ? . description=trf scaffold_140 . exon 29729 32138 . - . ID=Phyra85076.1;Parent=Phyra85076;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_140 ensembl protein_coding_gene 32321 33455 . + . ID=Phyra85077;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000007;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 32321 33455 . + . ID=Phyra85077;Parent=Phyra85077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 32321 32444 . + 0 ID=Phyra85077;Parent=Phyra85077;rank=1 scaffold_140 . exon 32321 32444 . + . ID=Phyra85077.1;Parent=Phyra85077;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_140 . CDS 32519 33411 . + 0 ID=Phyra85077;Parent=Phyra85077;rank=2 scaffold_140 . exon 32519 33411 . + . ID=Phyra85077.2;Parent=Phyra85077;constitutive=1;ensembl_phase=1;rank=2 scaffold_140 . CDS 33441 33455 . + 0 ID=Phyra85077;Parent=Phyra85077;rank=3 scaffold_140 . exon 33441 33455 . + . ID=Phyra85077.3;Parent=Phyra85077;constitutive=1;rank=3 scaffold_140 . biological_region 38337 38339 0.999 - . logic_name=eponine scaffold_140 . biological_region 38351 38354 0.999 + . logic_name=eponine scaffold_140 . biological_region 38354 38360 0.999 - . logic_name=eponine scaffold_140 . biological_region 38388 38390 0.999 - . logic_name=eponine scaffold_140 . biological_region 38516 38518 0.999 + . logic_name=eponine scaffold_140 . biological_region 43651 43652 0.999 - . logic_name=eponine scaffold_140 ensembl protein_coding_gene 36026 37496 . - . ID=Phyra85078;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000008;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 36026 37496 . - . ID=Phyra85078;Parent=Phyra85078;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 36026 36928 . - 0 ID=Phyra85078;Parent=Phyra85078;rank=3 scaffold_140 . exon 36026 36928 . - . ID=Phyra85078.3;Parent=Phyra85078;constitutive=1;rank=3 scaffold_140 . CDS 37000 37049 . - 0 ID=Phyra85078;Parent=Phyra85078;rank=2 scaffold_140 . exon 37000 37049 . - . ID=Phyra85078.2;Parent=Phyra85078;constitutive=1;ensembl_phase=1;rank=2 scaffold_140 . CDS 37259 37496 . - 0 ID=Phyra85078;Parent=Phyra85078;rank=1 scaffold_140 . exon 37259 37496 . - . ID=Phyra85078.1;Parent=Phyra85078;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_140 ensembl protein_coding_gene 38278 41256 . + . ID=Phyra85079;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000009;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 38278 41256 . + . ID=Phyra85079;Parent=Phyra85079;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 38278 39417 . + 0 ID=Phyra85079;Parent=Phyra85079;rank=1 scaffold_140 . exon 38278 39417 . + . ID=Phyra85079.1;Parent=Phyra85079;constitutive=1;rank=1 scaffold_140 . CDS 39437 39602 . + 0 ID=Phyra85079;Parent=Phyra85079;rank=2 scaffold_140 . exon 39437 39602 . + . ID=Phyra85079.2;Parent=Phyra85079;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_140 . CDS 39836 41256 . + 0 ID=Phyra85079;Parent=Phyra85079;rank=3 scaffold_140 . exon 39836 41256 . + . ID=Phyra85079.3;Parent=Phyra85079;constitutive=1;ensembl_phase=1;rank=3 scaffold_140 ensembl protein_coding_gene 41342 42686 . - . ID=Phyra85080;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000010;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 41342 42686 . - . ID=Phyra85080;Parent=Phyra85080;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 41342 42238 . - 0 ID=Phyra85080;Parent=Phyra85080;rank=4 scaffold_140 . exon 41342 42238 . - . ID=Phyra85080.4;Parent=Phyra85080;constitutive=1;rank=4 scaffold_140 . CDS 42302 42352 . - 0 ID=Phyra85080;Parent=Phyra85080;rank=3 scaffold_140 . exon 42302 42352 . - . ID=Phyra85080.3;Parent=Phyra85080;constitutive=1;rank=3 scaffold_140 . CDS 42417 42466 . - 0 ID=Phyra85080;Parent=Phyra85080;rank=2 scaffold_140 . exon 42417 42466 . - . ID=Phyra85080.2;Parent=Phyra85080;constitutive=1;ensembl_phase=1;rank=2 scaffold_140 . CDS 42542 42686 . - 0 ID=Phyra85080;Parent=Phyra85080;rank=1 scaffold_140 . exon 42542 42686 . - . ID=Phyra85080.1;Parent=Phyra85080;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_140 ensembl protein_coding_gene 42943 44094 . - . ID=Phyra85081;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000011;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 42943 44094 . - . ID=Phyra85081;Parent=Phyra85081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 42943 44094 . - 0 ID=Phyra85081;Parent=Phyra85081;rank=1 scaffold_140 . exon 42943 44094 . - . ID=Phyra85081.1;Parent=Phyra85081;constitutive=1;rank=1 scaffold_140 ensembl protein_coding_gene 44380 45252 . - . ID=Phyra85082;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000012;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 44380 45252 . - . ID=Phyra85082;Parent=Phyra85082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 44380 45252 . - 0 ID=Phyra85082;Parent=Phyra85082;rank=1 scaffold_140 . exon 44380 45252 . - . ID=Phyra85082.1;Parent=Phyra85082;constitutive=1;rank=1 scaffold_140 . repeat_region 45157 45180 . ? . description=trf scaffold_140 . repeat_region 46495 46556 . ? . description=dust scaffold_140 . repeat_region 48113 48143 . ? . description=trf scaffold_140 . repeat_region 50626 50675 . ? . description=dust scaffold_140 . repeat_region 51377 51427 . ? . description=dust scaffold_140 . repeat_region 51476 51527 . ? . description=trf scaffold_140 . repeat_region 51563 51613 . ? . description=dust scaffold_140 . repeat_region 51790 51839 . ? . description=dust scaffold_140 . repeat_region 53214 55020 . ? . description=dust scaffold_140 ensembl protein_coding_gene 46565 46990 . + . ID=Phyra85083;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000013;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 46565 46990 . + . ID=Phyra85083;Parent=Phyra85083;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 46565 46990 . + 0 ID=Phyra85083;Parent=Phyra85083;rank=1 scaffold_140 . exon 46565 46990 . + . ID=Phyra85083.1;Parent=Phyra85083;constitutive=1;rank=1 scaffold_140 ensembl protein_coding_gene 47358 47738 . - . ID=Phyra85084;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000014;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 47358 47738 . - . ID=Phyra85084;Parent=Phyra85084;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 47358 47738 . - 0 ID=Phyra85084;Parent=Phyra85084;rank=1 scaffold_140 . exon 47358 47738 . - . ID=Phyra85084.1;Parent=Phyra85084;constitutive=1;rank=1 scaffold_140 ensembl protein_coding_gene 49003 49647 . - . ID=Phyra85085;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000015;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 49003 49647 . - . ID=Phyra85085;Parent=Phyra85085;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 49003 49647 . - 0 ID=Phyra85085;Parent=Phyra85085;rank=1 scaffold_140 . exon 49003 49647 . - . ID=Phyra85085.1;Parent=Phyra85085;constitutive=1;rank=1 scaffold_140 ensembl protein_coding_gene 51950 53107 . - . ID=Phyra85086;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000016;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 51950 53107 . - . ID=Phyra85086;Parent=Phyra85086;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 51950 52385 . - 0 ID=Phyra85086;Parent=Phyra85086;rank=2 scaffold_140 . exon 51950 52385 . - . ID=Phyra85086.2;Parent=Phyra85086;constitutive=1;ensembl_phase=2;rank=2 scaffold_140 . CDS 52464 53107 . - 0 ID=Phyra85086;Parent=Phyra85086;rank=1 scaffold_140 . exon 52464 53107 . - . ID=Phyra85086.1;Parent=Phyra85086;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_140 . biological_region 55485 55488 0.999 - . logic_name=eponine scaffold_140 . biological_region 55541 55545 0.999 + . logic_name=eponine scaffold_140 . biological_region 55816 55818 0.999 - . logic_name=eponine scaffold_140 . biological_region 56233 56237 0.999 + . logic_name=eponine scaffold_140 . biological_region 56258 56258 0.999 + . logic_name=eponine scaffold_140 . biological_region 56358 56363 0.999 + . logic_name=eponine scaffold_140 ensembl protein_coding_gene 55474 56127 . - . ID=Phyra85087;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000017;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 55474 56127 . - . ID=Phyra85087;Parent=Phyra85087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 55474 56127 . - 0 ID=Phyra85087;Parent=Phyra85087;rank=1 scaffold_140 . exon 55474 56127 . - . ID=Phyra85087.1;Parent=Phyra85087;constitutive=1;rank=1 scaffold_140 ensembl protein_coding_gene 57309 60263 . - . ID=Phyra85088;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000018;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 57309 60263 . - . ID=Phyra85088;Parent=Phyra85088;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 57309 57881 . - 0 ID=Phyra85088;Parent=Phyra85088;rank=4 scaffold_140 . exon 57309 57881 . - . ID=Phyra85088.4;Parent=Phyra85088;constitutive=1;rank=4 scaffold_140 . CDS 57953 58306 . - 0 ID=Phyra85088;Parent=Phyra85088;rank=3 scaffold_140 . exon 57953 58306 . - . ID=Phyra85088.3;Parent=Phyra85088;constitutive=1;rank=3 scaffold_140 . CDS 58377 58474 . - 0 ID=Phyra85088;Parent=Phyra85088;rank=2 scaffold_140 . exon 58377 58474 . - . ID=Phyra85088.2;Parent=Phyra85088;constitutive=1;ensembl_phase=1;rank=2 scaffold_140 . CDS 58658 60263 . - 0 ID=Phyra85088;Parent=Phyra85088;rank=1 scaffold_140 . exon 58658 60263 . - . ID=Phyra85088.1;Parent=Phyra85088;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_140 ensembl protein_coding_gene 61097 65252 . + . ID=Phyra97049;biotype=protein_coding;external_name=C_scaffold_140000005;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 61097 65252 . + . ID=Phyra97049;Parent=Phyra97049;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 61097 61217 . + 0 ID=Phyra97049;Parent=Phyra97049;rank=1 scaffold_140 . exon 61097 61217 . + . ID=Phyra97049.1;Parent=Phyra97049;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_140 . CDS 61491 61657 . + 0 ID=Phyra97049;Parent=Phyra97049;rank=2 scaffold_140 . exon 61491 61657 . + . ID=Phyra97049.2;Parent=Phyra97049;constitutive=1;ensembl_phase=1;rank=2 scaffold_140 . CDS 61713 61961 . + 0 ID=Phyra97049;Parent=Phyra97049;rank=3 scaffold_140 . exon 61713 61961 . + . ID=Phyra97049.3;Parent=Phyra97049;constitutive=1;rank=3 scaffold_140 . CDS 62037 62121 . + 0 ID=Phyra97049;Parent=Phyra97049;rank=4 scaffold_140 . exon 62037 62121 . + . ID=Phyra97049.4;Parent=Phyra97049;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_140 . CDS 62284 62698 . + 0 ID=Phyra97049;Parent=Phyra97049;rank=5 scaffold_140 . exon 62284 62698 . + . ID=Phyra97049.5;Parent=Phyra97049;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_140 . CDS 62807 62959 . + 0 ID=Phyra97049;Parent=Phyra97049;rank=6 scaffold_140 . CDS 63318 64053 . + 0 ID=Phyra97049;Parent=Phyra97049;rank=7 scaffold_140 . CDS 64147 64447 . + 0 ID=Phyra97049;Parent=Phyra97049;rank=8 scaffold_140 . CDS 64655 64938 . + 0 ID=Phyra97049;Parent=Phyra97049;rank=9 scaffold_140 . CDS 65226 65252 . + 0 ID=Phyra97049;Parent=Phyra97049;rank=10 scaffold_140 . repeat_region 67723 79218 . ? . description=dust scaffold_140 ensembl protein_coding_gene 66230 67284 . - . ID=Phyra85090;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000020;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 66230 67284 . - . ID=Phyra85090;Parent=Phyra85090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 66230 66716 . - 0 ID=Phyra85090;Parent=Phyra85090;rank=2 scaffold_140 . exon 66230 66716 . - . ID=Phyra85090.2;Parent=Phyra85090;constitutive=1;ensembl_phase=2;rank=2 scaffold_140 . CDS 66791 67284 . - 0 ID=Phyra85090;Parent=Phyra85090;rank=1 scaffold_140 . exon 66791 67284 . - . ID=Phyra85090.1;Parent=Phyra85090;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_140 . exon 62807 62959 . + . ID=Phyra97049.6;Parent=Phyra97049;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_140 . exon 63318 64053 . + . ID=Phyra97049.7;Parent=Phyra97049;constitutive=1;ensembl_phase=2;rank=7 scaffold_140 . exon 64147 64447 . + . ID=Phyra97049.8;Parent=Phyra97049;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_140 . exon 64655 64938 . + . ID=Phyra97049.9;Parent=Phyra97049;constitutive=1;ensembl_phase=1;rank=9 scaffold_140 . exon 65226 65252 . + . ID=Phyra97049.10;Parent=Phyra97049;constitutive=1;rank=10 scaffold_140 ensembl protein_coding_gene 79440 79859 . + . ID=Phyra85091;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_140000021;logic_name=jgi_phyra1 scaffold_140 ensembl transcript 79440 79859 . + . ID=Phyra85091;Parent=Phyra85091;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_140 . CDS 79440 79859 . + 0 ID=Phyra85091;Parent=Phyra85091;rank=1 scaffold_140 . exon 79440 79859 . + . ID=Phyra85091.1;Parent=Phyra85091;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_139 1 81645 scaffold_139 . repeat_region 1687 26410 . ? . description=dust scaffold_139 . repeat_region 1687 26410 . ? . description=dust scaffold_139 ensembl protein_coding_gene 26504 27370 . + . ID=Phyra85064;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_139000001;logic_name=jgi_phyra1 scaffold_139 ensembl transcript 26504 27370 . + . ID=Phyra85064;Parent=Phyra85064;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_139 . CDS 26504 27370 . + 0 ID=Phyra85064;Parent=Phyra85064;rank=1 scaffold_139 . exon 26504 27370 . + . ID=Phyra85064.1;Parent=Phyra85064;constitutive=1;rank=1 scaffold_139 . repeat_region 29081 29130 . ? . description=trf scaffold_139 . biological_region 29873 29876 0.999 + . logic_name=eponine scaffold_139 . biological_region 31387 31391 0.999 + . logic_name=eponine scaffold_139 . biological_region 31438 31443 0.999 + . logic_name=eponine scaffold_139 . biological_region 31467 31467 0.999 - . logic_name=eponine scaffold_139 . biological_region 31504 31505 0.999 - . logic_name=eponine scaffold_139 . biological_region 31540 31546 0.999 + . logic_name=eponine scaffold_139 . biological_region 31595 31598 0.999 + . logic_name=eponine scaffold_139 . repeat_region 32077 32460 . + . description=GypsyPi-1c_I-int scaffold_139 . repeat_region 33663 33727 . + . description=GypsyPi-1c_I-int scaffold_139 . repeat_region 34097 34318 . + . description=GypsyPi-1c_I-int scaffold_139 . biological_region 34392 34395 0.999 - . logic_name=eponine scaffold_139 . biological_region 34434 34436 0.999 - . logic_name=eponine scaffold_139 . repeat_region 34603 35908 . + . description=GypsyPi-1c_I-int scaffold_139 ensembl protein_coding_gene 32723 33088 . + . ID=Phyra41444;biotype=protein_coding;external_name=gwEuk.139.2.1;logic_name=jgi_phyra1 scaffold_139 ensembl transcript 32723 33088 . + . ID=Phyra41444;Parent=Phyra41444;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_139 . CDS 32723 33088 . + 0 ID=Phyra41444;Parent=Phyra41444;rank=1 scaffold_139 . exon 32723 33088 . + . ID=Phyra41444.1;Parent=Phyra41444;constitutive=1;rank=1 scaffold_139 ensembl protein_coding_gene 29592 32705 . + . ID=Phyra85065;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_139000002;logic_name=jgi_phyra1 scaffold_139 ensembl transcript 29592 32705 . + . ID=Phyra85065;Parent=Phyra85065;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_139 . CDS 29592 30473 . + 0 ID=Phyra85065;Parent=Phyra85065;rank=1 scaffold_139 . exon 29592 30473 . + . ID=Phyra85065.1;Parent=Phyra85065;constitutive=1;rank=1 scaffold_139 . CDS 30596 30739 . + 0 ID=Phyra85065;Parent=Phyra85065;rank=2 scaffold_139 . exon 30596 30739 . + . ID=Phyra85065.2;Parent=Phyra85065;constitutive=1;rank=2 scaffold_139 . CDS 30941 31224 . + 0 ID=Phyra85065;Parent=Phyra85065;rank=3 scaffold_139 . exon 30941 31224 . + . ID=Phyra85065.3;Parent=Phyra85065;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_139 . CDS 31349 32444 . + 0 ID=Phyra85065;Parent=Phyra85065;rank=4 scaffold_139 . exon 31349 32444 . + . ID=Phyra85065.4;Parent=Phyra85065;constitutive=1;ensembl_phase=2;rank=4 scaffold_139 . CDS 32636 32705 . + 0 ID=Phyra85065;Parent=Phyra85065;rank=5 scaffold_139 . exon 32636 32705 . + . ID=Phyra85065.5;Parent=Phyra85065;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_139 ensembl protein_coding_gene 36060 37729 . - . ID=Phyra85067;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_139000004;logic_name=jgi_phyra1 scaffold_139 ensembl transcript 36060 37729 . - . ID=Phyra85067;Parent=Phyra85067;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_139 . CDS 36060 36082 . - 0 ID=Phyra85067;Parent=Phyra85067;rank=5 scaffold_139 . exon 36060 36082 . - . ID=Phyra85067.5;Parent=Phyra85067;constitutive=1;ensembl_phase=1;rank=5 scaffold_139 . CDS 36566 36763 . - 0 ID=Phyra85067;Parent=Phyra85067;rank=4 scaffold_139 . CDS 36788 36805 . - 0 ID=Phyra85067;Parent=Phyra85067;rank=3 scaffold_139 . CDS 36860 36926 . - 0 ID=Phyra85067;Parent=Phyra85067;rank=2 scaffold_139 . CDS 37163 37729 . - 0 ID=Phyra85067;Parent=Phyra85067;rank=1 scaffold_139 . repeat_region 36178 36385 . ? . description=dust scaffold_139 . repeat_region 39548 63809 . ? . description=dust scaffold_139 . exon 36566 36763 . - . ID=Phyra85067.4;Parent=Phyra85067;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_139 . exon 36788 36805 . - . ID=Phyra85067.3;Parent=Phyra85067;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_139 . exon 36860 36926 . - . ID=Phyra85067.2;Parent=Phyra85067;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_139 . exon 37163 37729 . - . ID=Phyra85067.1;Parent=Phyra85067;constitutive=1;rank=1 scaffold_139 . repeat_region 39548 63809 . ? . description=dust scaffold_139 . biological_region 66237 66240 0.999 - . logic_name=eponine scaffold_139 . biological_region 66275 66277 0.999 - . logic_name=eponine scaffold_139 . biological_region 66375 66378 0.999 - . logic_name=eponine scaffold_139 . repeat_region 67028 67056 . ? . description=trf scaffold_139 . repeat_region 67242 67549 . - . description=GypsyPi-1c_LTR scaffold_139 . repeat_region 67550 67911 . - . description=GypsyPi-1c_I-int scaffold_139 . biological_region 67821 67830 0.999 + . logic_name=eponine scaffold_139 . biological_region 67838 67843 0.999 - . logic_name=eponine scaffold_139 . biological_region 67864 67866 0.999 - . logic_name=eponine scaffold_139 . repeat_region 68147 69645 . - . description=GypsyPi-1c_I-int scaffold_139 . biological_region 68578 68580 0.999 + . logic_name=eponine scaffold_139 . repeat_region 69706 74209 . - . description=GypsyPi-1c_I-int scaffold_139 . biological_region 70453 70456 0.999 - . logic_name=eponine scaffold_139 ensembl protein_coding_gene 66018 66984 . - . ID=Phyra85068;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_139000005;logic_name=jgi_phyra1 scaffold_139 ensembl transcript 66018 66984 . - . ID=Phyra85068;Parent=Phyra85068;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_139 . CDS 66018 66514 . - 0 ID=Phyra85068;Parent=Phyra85068;rank=4 scaffold_139 . exon 66018 66514 . - . ID=Phyra85068.4;Parent=Phyra85068;constitutive=1;ensembl_phase=1;rank=4 scaffold_139 . CDS 66586 66655 . - 0 ID=Phyra85068;Parent=Phyra85068;rank=3 scaffold_139 . exon 66586 66655 . - . ID=Phyra85068.3;Parent=Phyra85068;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_139 . CDS 66792 66887 . - 0 ID=Phyra85068;Parent=Phyra85068;rank=2 scaffold_139 . exon 66792 66887 . - . ID=Phyra85068.2;Parent=Phyra85068;constitutive=1;rank=2 scaffold_139 . CDS 66934 66984 . - 0 ID=Phyra85068;Parent=Phyra85068;rank=1 scaffold_139 . exon 66934 66984 . - . ID=Phyra85068.1;Parent=Phyra85068;constitutive=1;rank=1 scaffold_139 ensembl protein_coding_gene 67732 69333 . + . ID=Phyra85069;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_139000006;logic_name=jgi_phyra1 scaffold_139 ensembl transcript 67732 69333 . + . ID=Phyra85069;Parent=Phyra85069;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_139 . CDS 67732 67924 . + 0 ID=Phyra85069;Parent=Phyra85069;rank=1 scaffold_139 . exon 67732 67924 . + . ID=Phyra85069.1;Parent=Phyra85069;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_139 . CDS 68150 69333 . + 0 ID=Phyra85069;Parent=Phyra85069;rank=2 scaffold_139 . exon 68150 69333 . + . ID=Phyra85069.2;Parent=Phyra85069;constitutive=1;ensembl_phase=1;rank=2 scaffold_139 ensembl protein_coding_gene 72494 74122 . - . ID=Phyra85070;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_139000007;logic_name=jgi_phyra1 scaffold_139 ensembl transcript 72494 74122 . - . ID=Phyra85070;Parent=Phyra85070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_139 . CDS 72494 72547 . - 0 ID=Phyra85070;Parent=Phyra85070;rank=4 scaffold_139 . exon 72494 72547 . - . ID=Phyra85070.4;Parent=Phyra85070;constitutive=1;rank=4 scaffold_139 . CDS 72703 72899 . - 0 ID=Phyra85070;Parent=Phyra85070;rank=3 scaffold_139 . CDS 73322 73754 . - 0 ID=Phyra85070;Parent=Phyra85070;rank=2 scaffold_139 . CDS 73952 74122 . - 0 ID=Phyra85070;Parent=Phyra85070;rank=1 scaffold_139 . repeat_region 73800 73877 . ? . description=dust scaffold_139 . repeat_region 77256 77305 . ? . description=dust scaffold_139 . repeat_region 79957 80584 . ? . description=dust scaffold_139 . exon 72703 72899 . - . ID=Phyra85070.3;Parent=Phyra85070;constitutive=1;ensembl_phase=1;rank=3 scaffold_139 . exon 73322 73754 . - . ID=Phyra85070.2;Parent=Phyra85070;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_139 . exon 73952 74122 . - . ID=Phyra85070.1;Parent=Phyra85070;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_138 1 84123 scaffold_138 . repeat_region 1814 2955 . ? . description=dust scaffold_138 . repeat_region 4503 4552 . ? . description=dust scaffold_138 . repeat_region 4674 4681 . ? . description=dust scaffold_138 . repeat_region 6272 8256 . ? . description=dust scaffold_138 . biological_region 9182 9187 0.999 - . logic_name=eponine scaffold_138 ensembl protein_coding_gene 693 1523 . + . ID=Phyra85055;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_138000001;logic_name=jgi_phyra1 scaffold_138 ensembl transcript 693 1523 . + . ID=Phyra85055;Parent=Phyra85055;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_138 . CDS 693 1523 . + 0 ID=Phyra85055;Parent=Phyra85055;rank=1 scaffold_138 . exon 693 1523 . + . ID=Phyra85055.1;Parent=Phyra85055;constitutive=1;rank=1 scaffold_138 ensembl protein_coding_gene 3267 4429 . - . ID=Phyra85056;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_138000002;logic_name=jgi_phyra1 scaffold_138 ensembl transcript 3267 4429 . - . ID=Phyra85056;Parent=Phyra85056;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_138 . CDS 3267 3696 . - 0 ID=Phyra85056;Parent=Phyra85056;rank=2 scaffold_138 . exon 3267 3696 . - . ID=Phyra85056.2;Parent=Phyra85056;constitutive=1;ensembl_phase=2;rank=2 scaffold_138 . CDS 3750 4429 . - 0 ID=Phyra85056;Parent=Phyra85056;rank=1 scaffold_138 . exon 3750 4429 . - . ID=Phyra85056.1;Parent=Phyra85056;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_138 ensembl protein_coding_gene 8708 10309 . + . ID=Phyra85057;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_138000003;logic_name=jgi_phyra1 scaffold_138 ensembl transcript 8708 10309 . + . ID=Phyra85057;Parent=Phyra85057;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_138 . CDS 8708 10309 . + 0 ID=Phyra85057;Parent=Phyra85057;rank=1 scaffold_138 . exon 8708 10309 . + . ID=Phyra85057.1;Parent=Phyra85057;constitutive=1;rank=1 scaffold_138 . repeat_region 10326 10547 . - . description=GypsyPi-1c_I-int scaffold_138 . repeat_region 13040 18907 . ? . description=dust scaffold_138 . repeat_region 20142 22193 . ? . description=dust scaffold_138 . repeat_region 25038 25452 . ? . description=dust scaffold_138 . biological_region 25689 25693 0.999 + . logic_name=eponine scaffold_138 . repeat_region 36276 36387 . ? . description=trf scaffold_138 ensembl protein_coding_gene 37116 38903 . + . ID=Phyra85058;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_138000004;logic_name=jgi_phyra1 scaffold_138 ensembl transcript 37116 38903 . + . ID=Phyra85058;Parent=Phyra85058;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_138 . CDS 37116 38903 . + 0 ID=Phyra85058;Parent=Phyra85058;rank=1 scaffold_138 . exon 37116 38903 . + . ID=Phyra85058.1;Parent=Phyra85058;constitutive=1;rank=1 scaffold_138 . repeat_region 42884 42904 . ? . description=dust scaffold_138 . repeat_region 45270 45281 . ? . description=dust scaffold_138 ensembl protein_coding_gene 40049 40492 . - . ID=Phyra85059;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_138000005;logic_name=jgi_phyra1 scaffold_138 ensembl transcript 40049 40492 . - . ID=Phyra85059;Parent=Phyra85059;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_138 . CDS 40049 40492 . - 0 ID=Phyra85059;Parent=Phyra85059;rank=1 scaffold_138 . exon 40049 40492 . - . ID=Phyra85059.1;Parent=Phyra85059;constitutive=1;rank=1 scaffold_138 ensembl protein_coding_gene 43246 44906 . + . ID=Phyra85060;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_138000006;logic_name=jgi_phyra1 scaffold_138 ensembl transcript 43246 44906 . + . ID=Phyra85060;Parent=Phyra85060;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_138 . CDS 43246 44844 . + 0 ID=Phyra85060;Parent=Phyra85060;rank=1 scaffold_138 . exon 43246 44844 . + . ID=Phyra85060.1;Parent=Phyra85060;constitutive=1;rank=1 scaffold_138 . CDS 44889 44906 . + 0 ID=Phyra85060;Parent=Phyra85060;rank=2 scaffold_138 . exon 44889 44906 . + . ID=Phyra85060.2;Parent=Phyra85060;constitutive=1;rank=2 scaffold_138 ensembl protein_coding_gene 49331 51136 . + . ID=Phyra85061;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_138000007;logic_name=jgi_phyra1 scaffold_138 ensembl transcript 49331 51136 . + . ID=Phyra85061;Parent=Phyra85061;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_138 . CDS 49331 51136 . + 0 ID=Phyra85061;Parent=Phyra85061;rank=1 scaffold_138 . exon 49331 51136 . + . ID=Phyra85061.1;Parent=Phyra85061;constitutive=1;rank=1 scaffold_138 . repeat_region 58372 58400 . ? . description=trf scaffold_138 . repeat_region 58689 58715 . ? . description=trf scaffold_138 . repeat_region 60434 61464 . ? . description=dust scaffold_138 ensembl protein_coding_gene 59667 60353 . + . ID=Phyra85062;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_138000008;logic_name=jgi_phyra1 scaffold_138 ensembl transcript 59667 60353 . + . ID=Phyra85062;Parent=Phyra85062;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_138 . CDS 59667 60353 . + 0 ID=Phyra85062;Parent=Phyra85062;rank=1 scaffold_138 . exon 59667 60353 . + . ID=Phyra85062.1;Parent=Phyra85062;constitutive=1;rank=1 scaffold_138 . biological_region 69979 69981 0.999 - . logic_name=eponine scaffold_138 . biological_region 71276 71279 0.999 + . logic_name=eponine scaffold_138 . biological_region 71280 71282 0.999 - . logic_name=eponine scaffold_138 . biological_region 71325 71329 0.999 - . logic_name=eponine scaffold_138 . biological_region 73835 73842 0.999 + . logic_name=eponine scaffold_138 . repeat_region 74709 78840 . ? . description=dust scaffold_138 . repeat_region 80546 81026 . ? . description=dust scaffold_138 ensembl protein_coding_gene 82794 83620 . - . ID=Phyra85063;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_138000009;logic_name=jgi_phyra1 scaffold_138 ensembl transcript 82794 83620 . - . ID=Phyra85063;Parent=Phyra85063;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_138 . CDS 82794 83240 . - 0 ID=Phyra85063;Parent=Phyra85063;rank=2 scaffold_138 . exon 82794 83240 . - . ID=Phyra85063.2;Parent=Phyra85063;constitutive=1;rank=2 scaffold_138 . CDS 83573 83620 . - 0 ID=Phyra85063;Parent=Phyra85063;rank=1 scaffold_138 . exon 83573 83620 . - . ID=Phyra85063.1;Parent=Phyra85063;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_137 1 87836 scaffold_137 . repeat_region 4344 4352 . ? . description=dust scaffold_137 ensembl protein_coding_gene 4863 5246 . - . ID=Phyra85052;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_137000001;logic_name=jgi_phyra1 scaffold_137 ensembl transcript 4863 5246 . - . ID=Phyra85052;Parent=Phyra85052;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_137 . CDS 4863 5246 . - 0 ID=Phyra85052;Parent=Phyra85052;rank=1 scaffold_137 . exon 4863 5246 . - . ID=Phyra85052.1;Parent=Phyra85052;constitutive=1;rank=1 scaffold_137 . repeat_region 14915 14941 . ? . description=trf scaffold_137 . repeat_region 16168 16751 . + . description=Gypsy-1-I_PI-int scaffold_137 . repeat_region 19282 28893 . ? . description=dust scaffold_137 . repeat_region 36621 37211 . + . description=Gypsy-1-I_PI-int scaffold_137 . repeat_region 38322 38400 . ? . description=trf scaffold_137 ensembl protein_coding_gene 36809 37144 . + . ID=Phyra41398;biotype=protein_coding;external_name=gwEuk.137.1.1;logic_name=jgi_phyra1 scaffold_137 ensembl transcript 36809 37144 . + . ID=Phyra41398;Parent=Phyra41398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_137 . CDS 36809 37144 . + 0 ID=Phyra41398;Parent=Phyra41398;rank=1 scaffold_137 . exon 36809 37144 . + . ID=Phyra41398.1;Parent=Phyra41398;constitutive=1;rank=1 scaffold_137 . biological_region 41922 41923 0.999 + . logic_name=eponine scaffold_137 . repeat_region 42195 42207 . ? . description=dust scaffold_137 . repeat_region 44677 45065 . + . description=GypsyPi-1c_I-int scaffold_137 . repeat_region 45670 45768 . + . description=GypsyPi-1c_I-int scaffold_137 . biological_region 46074 46081 0.999 + . logic_name=eponine scaffold_137 . biological_region 46175 46176 0.999 - . logic_name=eponine scaffold_137 . biological_region 46212 46216 0.999 + . logic_name=eponine scaffold_137 . repeat_region 48264 48277 . ? . description=dust scaffold_137 . repeat_region 51278 51324 . ? . description=trf scaffold_137 . repeat_region 51296 51334 . ? . description=trf scaffold_137 . repeat_region 51297 51334 . ? . description=trf scaffold_137 . repeat_region 51297 51334 . ? . description=trf scaffold_137 . repeat_region 56147 56191 . ? . description=trf scaffold_137 . repeat_region 56147 56191 . ? . description=trf scaffold_137 ensembl pseudogene 51957 52357 . + . ID=Phyra41401;biotype=pseudogene;external_name=gwEuk.137.4.1;logic_name=jgi_phyra1 scaffold_137 ensembl pseudogene 51957 52357 . + . ID=Phyra41401;Parent=Phyra41401;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_137 . exon 51957 52357 . + . ID=Phyra41401.1;Parent=Phyra41401;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_137 ensembl protein_coding_gene 53841 54257 . - . ID=Phyra85053;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_137000002;logic_name=jgi_phyra1 scaffold_137 ensembl transcript 53841 54257 . - . ID=Phyra85053;Parent=Phyra85053;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_137 . CDS 53841 54257 . - 0 ID=Phyra85053;Parent=Phyra85053;rank=1 scaffold_137 . exon 53841 54257 . - . ID=Phyra85053.1;Parent=Phyra85053;constitutive=1;rank=1 scaffold_137 . repeat_region 56753 70802 . ? . description=dust scaffold_137 . repeat_region 70804 70920 . + . description=GypsyPi-1c_I-int scaffold_137 . repeat_region 79415 79424 . ? . description=dust scaffold_137 . repeat_region 82440 84878 . ? . description=dust scaffold_137 . repeat_region 86055 86104 . ? . description=dust scaffold_137 ensembl protein_coding_gene 85119 85956 . - . ID=Phyra85054;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_137000003;logic_name=jgi_phyra1 scaffold_137 ensembl transcript 85119 85956 . - . ID=Phyra85054;Parent=Phyra85054;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_137 . CDS 85119 85154 . - 0 ID=Phyra85054;Parent=Phyra85054;rank=2 scaffold_137 . exon 85119 85154 . - . ID=Phyra85054.2;Parent=Phyra85054;constitutive=1;rank=2 scaffold_137 . CDS 85216 85956 . - 0 ID=Phyra85054;Parent=Phyra85054;rank=1 scaffold_137 . exon 85216 85956 . - . ID=Phyra85054.1;Parent=Phyra85054;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_136 1 87839 scaffold_136 . biological_region 283 288 0.999 - . logic_name=eponine scaffold_136 . biological_region 529 530 0.999 + . logic_name=eponine scaffold_136 . repeat_region 845 31458 . ? . description=dust scaffold_136 . repeat_region 845 31458 . ? . description=dust scaffold_136 . repeat_region 31617 31699 . ? . description=trf scaffold_136 . repeat_region 31622 31698 . ? . description=trf scaffold_136 . biological_region 31906 31911 0.999 - . logic_name=eponine scaffold_136 . biological_region 32871 32877 0.999 + . logic_name=eponine scaffold_136 . biological_region 37326 37331 0.999 + . logic_name=eponine scaffold_136 . biological_region 37837 37843 0.999 - . logic_name=eponine scaffold_136 . biological_region 37878 37880 0.999 + . logic_name=eponine scaffold_136 ensembl protein_coding_gene 36696 37988 . - . ID=Phyra85045;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_136000001;logic_name=jgi_phyra1 scaffold_136 ensembl transcript 36696 37988 . - . ID=Phyra85045;Parent=Phyra85045;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_136 . CDS 36696 37988 . - 0 ID=Phyra85045;Parent=Phyra85045;rank=1 scaffold_136 . exon 36696 37988 . - . ID=Phyra85045.1;Parent=Phyra85045;constitutive=1;rank=1 scaffold_136 . repeat_region 40080 43963 . ? . description=dust scaffold_136 . repeat_region 46212 51329 . ? . description=dust scaffold_136 ensembl protein_coding_gene 39153 40079 . + . ID=Phyra85046;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_136000002;logic_name=jgi_phyra1 scaffold_136 ensembl transcript 39153 40079 . + . ID=Phyra85046;Parent=Phyra85046;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_136 . CDS 39153 40079 . + 0 ID=Phyra85046;Parent=Phyra85046;rank=1 scaffold_136 . exon 39153 40079 . + . ID=Phyra85046.1;Parent=Phyra85046;constitutive=1;rank=1 scaffold_136 . repeat_region 59298 59339 . ? . description=dust scaffold_136 . repeat_region 59765 59931 . ? . description=trf scaffold_136 . repeat_region 60224 61049 . ? . description=dust scaffold_136 . biological_region 61322 61325 0.999 + . logic_name=eponine scaffold_136 . repeat_region 62393 62446 . ? . description=trf scaffold_136 . repeat_region 62393 62454 . ? . description=dust scaffold_136 . repeat_region 62396 62467 . ? . description=trf scaffold_136 . repeat_region 63387 63430 . ? . description=trf scaffold_136 . biological_region 64086 64086 0.999 - . logic_name=eponine scaffold_136 . repeat_region 64725 64754 . ? . description=trf scaffold_136 ensembl protein_coding_gene 59346 60221 . + . ID=Phyra85047;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_136000003;logic_name=jgi_phyra1 scaffold_136 ensembl transcript 59346 60221 . + . ID=Phyra85047;Parent=Phyra85047;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_136 . CDS 59346 60221 . + 0 ID=Phyra85047;Parent=Phyra85047;rank=1 scaffold_136 . exon 59346 60221 . + . ID=Phyra85047.1;Parent=Phyra85047;constitutive=1;rank=1 scaffold_136 ensembl protein_coding_gene 61866 62558 . + . ID=Phyra85048;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_136000004;logic_name=jgi_phyra1 scaffold_136 ensembl transcript 61866 62558 . + . ID=Phyra85048;Parent=Phyra85048;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_136 . CDS 61866 62558 . + 0 ID=Phyra85048;Parent=Phyra85048;rank=1 scaffold_136 . exon 61866 62558 . + . ID=Phyra85048.1;Parent=Phyra85048;constitutive=1;rank=1 scaffold_136 ensembl protein_coding_gene 63132 63641 . + . ID=Phyra85049;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_136000005;logic_name=jgi_phyra1 scaffold_136 ensembl transcript 63132 63641 . + . ID=Phyra85049;Parent=Phyra85049;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_136 . CDS 63132 63641 . + 0 ID=Phyra85049;Parent=Phyra85049;rank=1 scaffold_136 . exon 63132 63641 . + . ID=Phyra85049.1;Parent=Phyra85049;constitutive=1;rank=1 scaffold_136 ensembl protein_coding_gene 64590 65111 . - . ID=Phyra85050;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_136000006;logic_name=jgi_phyra1 scaffold_136 ensembl transcript 64590 65111 . - . ID=Phyra85050;Parent=Phyra85050;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_136 . CDS 64590 65111 . - 0 ID=Phyra85050;Parent=Phyra85050;rank=1 scaffold_136 . exon 64590 65111 . - . ID=Phyra85050.1;Parent=Phyra85050;constitutive=1;rank=1 scaffold_136 ensembl protein_coding_gene 69091 69982 . + . ID=Phyra85051;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_136000007;logic_name=jgi_phyra1 scaffold_136 ensembl transcript 69091 69982 . + . ID=Phyra85051;Parent=Phyra85051;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_136 . CDS 69091 69212 . + 0 ID=Phyra85051;Parent=Phyra85051;rank=1 scaffold_136 . exon 69091 69212 . + . ID=Phyra85051.1;Parent=Phyra85051;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_136 . CDS 69297 69378 . + 0 ID=Phyra85051;Parent=Phyra85051;rank=2 scaffold_136 . exon 69297 69378 . + . ID=Phyra85051.2;Parent=Phyra85051;constitutive=1;ensembl_phase=2;rank=2 scaffold_136 . CDS 69449 69982 . + 0 ID=Phyra85051;Parent=Phyra85051;rank=3 scaffold_136 . exon 69449 69982 . + . ID=Phyra85051.3;Parent=Phyra85051;constitutive=1;rank=3 scaffold_136 . repeat_region 81145 85882 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_135 1 89750 scaffold_135 . repeat_region 2217 2350 . ? . description=trf scaffold_135 . repeat_region 2759 2776 . ? . description=dust scaffold_135 . repeat_region 3700 3911 . - . description=GypsyPi-1c_LTR scaffold_135 . repeat_region 3960 4005 . - . description=GypsyPi-1c_LTR scaffold_135 . repeat_region 5074 5150 . - . description=GypsyPi-1c_I-int scaffold_135 . repeat_region 5276 5348 . - . description=GypsyPi-1c_I-int scaffold_135 . repeat_region 5518 5709 . - . description=GypsyPi-1c_I-int scaffold_135 . repeat_region 5974 8235 . - . description=GypsyPi-1c_I-int scaffold_135 . repeat_region 7172 7180 . ? . description=dust scaffold_135 . biological_region 7300 7302 0.999 - . logic_name=eponine scaffold_135 . repeat_region 8236 8447 . - . description=GypsyPi-1c_LTR scaffold_135 . repeat_region 8496 8541 . - . description=GypsyPi-1c_LTR scaffold_135 ensembl protein_coding_gene 7166 8148 . - . ID=Phyra85034;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_135000001;logic_name=jgi_phyra1 scaffold_135 ensembl transcript 7166 8148 . - . ID=Phyra85034;Parent=Phyra85034;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_135 . CDS 7166 7561 . - 0 ID=Phyra85034;Parent=Phyra85034;rank=3 scaffold_135 . exon 7166 7561 . - . ID=Phyra85034.3;Parent=Phyra85034;constitutive=1;rank=3 scaffold_135 . CDS 7610 8109 . - 0 ID=Phyra85034;Parent=Phyra85034;rank=2 scaffold_135 . exon 7610 8109 . - . ID=Phyra85034.2;Parent=Phyra85034;constitutive=1;ensembl_phase=1;rank=2 scaffold_135 . CDS 8139 8148 . - 0 ID=Phyra85034;Parent=Phyra85034;rank=1 scaffold_135 . exon 8139 8148 . - . ID=Phyra85034.1;Parent=Phyra85034;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_135 ensembl protein_coding_gene 14165 15891 . + . ID=Phyra85035;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_135000002;logic_name=jgi_phyra1 scaffold_135 ensembl transcript 14165 15891 . + . ID=Phyra85035;Parent=Phyra85035;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_135 . CDS 14165 14312 . + 0 ID=Phyra85035;Parent=Phyra85035;rank=1 scaffold_135 . exon 14165 14312 . + . ID=Phyra85035.1;Parent=Phyra85035;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_135 . CDS 14488 15404 . + 0 ID=Phyra85035;Parent=Phyra85035;rank=2 scaffold_135 . exon 14488 15404 . + . ID=Phyra85035.2;Parent=Phyra85035;constitutive=1;ensembl_phase=1;rank=2 scaffold_135 . CDS 15454 15891 . + 0 ID=Phyra85035;Parent=Phyra85035;rank=3 scaffold_135 . exon 15454 15891 . + . ID=Phyra85035.3;Parent=Phyra85035;constitutive=1;rank=3 scaffold_135 ensembl protein_coding_gene 18118 19077 . - . ID=Phyra85036;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_135000003;logic_name=jgi_phyra1 scaffold_135 ensembl transcript 18118 19077 . - . ID=Phyra85036;Parent=Phyra85036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_135 . CDS 18118 19077 . - 0 ID=Phyra85036;Parent=Phyra85036;rank=1 scaffold_135 . exon 18118 19077 . - . ID=Phyra85036.1;Parent=Phyra85036;constitutive=1;rank=1 scaffold_135 . repeat_region 19368 20089 . ? . description=dust scaffold_135 . repeat_region 21505 21514 . ? . description=dust scaffold_135 . repeat_region 21798 22730 . ? . description=dust scaffold_135 ensembl protein_coding_gene 23978 25034 . + . ID=Phyra85037;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_135000004;logic_name=jgi_phyra1 scaffold_135 ensembl transcript 23978 25034 . + . ID=Phyra85037;Parent=Phyra85037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_135 . CDS 23978 24889 . + 0 ID=Phyra85037;Parent=Phyra85037;rank=1 scaffold_135 . exon 23978 24889 . + . ID=Phyra85037.1;Parent=Phyra85037;constitutive=1;rank=1 scaffold_135 . CDS 24972 25034 . + 0 ID=Phyra85037;Parent=Phyra85037;rank=2 scaffold_135 . exon 24972 25034 . + . ID=Phyra85037.2;Parent=Phyra85037;constitutive=1;rank=2 scaffold_135 ensembl protein_coding_gene 26346 27557 . + . ID=Phyra85038;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_135000005;logic_name=jgi_phyra1 scaffold_135 ensembl transcript 26346 27557 . + . ID=Phyra85038;Parent=Phyra85038;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_135 . CDS 26346 27557 . + 0 ID=Phyra85038;Parent=Phyra85038;rank=1 scaffold_135 . exon 26346 27557 . + . ID=Phyra85038.1;Parent=Phyra85038;constitutive=1;rank=1 scaffold_135 . repeat_region 39519 39562 . ? . description=trf scaffold_135 ensembl protein_coding_gene 32469 35718 . - . ID=Phyra85039;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_135000006;logic_name=jgi_phyra1 scaffold_135 ensembl transcript 32469 35718 . - . ID=Phyra85039;Parent=Phyra85039;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_135 . CDS 32469 32491 . - 0 ID=Phyra85039;Parent=Phyra85039;rank=3 scaffold_135 . exon 32469 32491 . - . ID=Phyra85039.3;Parent=Phyra85039;constitutive=1;ensembl_phase=1;rank=3 scaffold_135 . CDS 33259 35275 . - 0 ID=Phyra85039;Parent=Phyra85039;rank=2 scaffold_135 . exon 33259 35275 . - . ID=Phyra85039.2;Parent=Phyra85039;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_135 . CDS 35356 35718 . - 0 ID=Phyra85039;Parent=Phyra85039;rank=1 scaffold_135 . exon 35356 35718 . - . ID=Phyra85039.1;Parent=Phyra85039;constitutive=1;rank=1 scaffold_135 ensembl protein_coding_gene 37342 40539 . - . ID=Phyra85040;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_135000007;logic_name=jgi_phyra1 scaffold_135 ensembl transcript 37342 40539 . - . ID=Phyra85040;Parent=Phyra85040;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_135 . CDS 37342 37390 . - 0 ID=Phyra85040;Parent=Phyra85040;rank=7 scaffold_135 . exon 37342 37390 . - . ID=Phyra85040.7;Parent=Phyra85040;constitutive=1;ensembl_phase=2;rank=7 scaffold_135 . CDS 37489 37813 . - 0 ID=Phyra85040;Parent=Phyra85040;rank=6 scaffold_135 . exon 37489 37813 . - . ID=Phyra85040.6;Parent=Phyra85040;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_135 . CDS 37972 38036 . - 0 ID=Phyra85040;Parent=Phyra85040;rank=5 scaffold_135 . exon 37972 38036 . - . ID=Phyra85040.5;Parent=Phyra85040;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_135 . CDS 38143 39058 . - 0 ID=Phyra85040;Parent=Phyra85040;rank=4 scaffold_135 . exon 38143 39058 . - . ID=Phyra85040.4;Parent=Phyra85040;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_135 . CDS 39190 39910 . - 0 ID=Phyra85040;Parent=Phyra85040;rank=3 scaffold_135 . exon 39190 39910 . - . ID=Phyra85040.3;Parent=Phyra85040;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_135 . CDS 40325 40450 . - 0 ID=Phyra85040;Parent=Phyra85040;rank=2 scaffold_135 . CDS 40537 40539 . - 0 ID=Phyra85040;Parent=Phyra85040;rank=1 scaffold_135 . repeat_region 40287 40341 . ? . description=dust scaffold_135 . repeat_region 40377 40951 . - . description=GypsyPi-1c_I-int scaffold_135 . repeat_region 41171 41716 . ? . description=dust scaffold_135 . biological_region 41786 41788 0.999 - . logic_name=eponine scaffold_135 . biological_region 41837 41843 0.999 - . logic_name=eponine scaffold_135 . biological_region 41878 41879 0.999 + . logic_name=eponine scaffold_135 . biological_region 41916 41916 0.999 + . logic_name=eponine scaffold_135 . biological_region 41940 41945 0.999 - . logic_name=eponine scaffold_135 . biological_region 41992 41996 0.999 - . logic_name=eponine scaffold_135 . repeat_region 42333 42431 . - . description=GypsyPi-1c_I-int scaffold_135 . repeat_region 43037 43153 . - . description=GypsyPi-1c_I-int scaffold_135 . biological_region 43508 43512 0.999 - . logic_name=eponine scaffold_135 . biological_region 44584 44589 0.999 - . logic_name=eponine scaffold_135 . repeat_region 48309 48323 . ? . description=dust scaffold_135 . exon 40325 40450 . - . ID=Phyra85040.2;Parent=Phyra85040;constitutive=1;rank=2 scaffold_135 . exon 40537 40539 . - . ID=Phyra85040.1;Parent=Phyra85040;constitutive=1;rank=1 scaffold_135 ensembl protein_coding_gene 42154 43662 . - . ID=Phyra85041;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_135000008;logic_name=jgi_phyra1 scaffold_135 ensembl transcript 42154 43662 . - . ID=Phyra85041;Parent=Phyra85041;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_135 . CDS 42154 42441 . - 0 ID=Phyra85041;Parent=Phyra85041;rank=3 scaffold_135 . exon 42154 42441 . - . ID=Phyra85041.3;Parent=Phyra85041;constitutive=1;rank=3 scaffold_135 . CDS 42643 42777 . - 0 ID=Phyra85041;Parent=Phyra85041;rank=2 scaffold_135 . exon 42643 42777 . - . ID=Phyra85041.2;Parent=Phyra85041;constitutive=1;rank=2 scaffold_135 . CDS 42910 43662 . - 0 ID=Phyra85041;Parent=Phyra85041;rank=1 scaffold_135 . exon 42910 43662 . - . ID=Phyra85041.1;Parent=Phyra85041;constitutive=1;rank=1 scaffold_135 ensembl protein_coding_gene 49845 50468 . - . ID=Phyra85042;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_135000009;logic_name=jgi_phyra1 scaffold_135 ensembl transcript 49845 50468 . - . ID=Phyra85042;Parent=Phyra85042;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_135 . CDS 49845 50468 . - 0 ID=Phyra85042;Parent=Phyra85042;rank=1 scaffold_135 . exon 49845 50468 . - . ID=Phyra85042.1;Parent=Phyra85042;constitutive=1;rank=1 scaffold_135 . repeat_region 50668 50715 . ? . description=trf scaffold_135 . repeat_region 55379 55420 . ? . description=trf scaffold_135 . repeat_region 57983 58033 . ? . description=trf scaffold_135 ensembl protein_coding_gene 51596 56333 . - . ID=Phyra85043;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_135000010;logic_name=jgi_phyra1 scaffold_135 ensembl transcript 51596 56333 . - . ID=Phyra85043;Parent=Phyra85043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_135 . CDS 51596 53117 . - 0 ID=Phyra85043;Parent=Phyra85043;rank=9 scaffold_135 . exon 51596 53117 . - . ID=Phyra85043.9;Parent=Phyra85043;constitutive=1;ensembl_phase=2;rank=9 scaffold_135 . CDS 53166 53482 . - 0 ID=Phyra85043;Parent=Phyra85043;rank=8 scaffold_135 . exon 53166 53482 . - . ID=Phyra85043.8;Parent=Phyra85043;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_135 . CDS 53687 53746 . - 0 ID=Phyra85043;Parent=Phyra85043;rank=7 scaffold_135 . exon 53687 53746 . - . ID=Phyra85043.7;Parent=Phyra85043;constitutive=1;rank=7 scaffold_135 . CDS 53909 54231 . - 0 ID=Phyra85043;Parent=Phyra85043;rank=6 scaffold_135 . exon 53909 54231 . - . ID=Phyra85043.6;Parent=Phyra85043;constitutive=1;ensembl_phase=1;rank=6 scaffold_135 . CDS 54256 54318 . - 0 ID=Phyra85043;Parent=Phyra85043;rank=5 scaffold_135 . exon 54256 54318 . - . ID=Phyra85043.5;Parent=Phyra85043;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_135 . CDS 54413 54481 . - 0 ID=Phyra85043;Parent=Phyra85043;rank=4 scaffold_135 . exon 54413 54481 . - . ID=Phyra85043.4;Parent=Phyra85043;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_135 . CDS 54652 55766 . - 0 ID=Phyra85043;Parent=Phyra85043;rank=3 scaffold_135 . exon 54652 55766 . - . ID=Phyra85043.3;Parent=Phyra85043;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_135 . CDS 55881 56070 . - 0 ID=Phyra85043;Parent=Phyra85043;rank=2 scaffold_135 . exon 55881 56070 . - . ID=Phyra85043.2;Parent=Phyra85043;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_135 . CDS 56114 56333 . - 0 ID=Phyra85043;Parent=Phyra85043;rank=1 scaffold_135 . exon 56114 56333 . - . ID=Phyra85043.1;Parent=Phyra85043;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_135 . repeat_region 63861 65210 . ? . description=dust scaffold_135 . repeat_region 68388 71625 . ? . description=dust scaffold_135 ensembl protein_coding_gene 60569 62265 . - . ID=Phyra85044;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_135000011;logic_name=jgi_phyra1 scaffold_135 ensembl transcript 60569 62265 . - . ID=Phyra85044;Parent=Phyra85044;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_135 . CDS 60569 61190 . - 0 ID=Phyra85044;Parent=Phyra85044;rank=2 scaffold_135 . exon 60569 61190 . - . ID=Phyra85044.2;Parent=Phyra85044;constitutive=1;ensembl_phase=2;rank=2 scaffold_135 . CDS 61250 62265 . - 0 ID=Phyra85044;Parent=Phyra85044;rank=1 scaffold_135 . exon 61250 62265 . - . ID=Phyra85044.1;Parent=Phyra85044;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_135 . repeat_region 78628 78780 . + . description=GypsyPi-1c_LTR scaffold_135 . repeat_region 83034 85724 . ? . description=dust scaffold_135 . repeat_region 85725 86238 . - . description=GypsyPi-1c_I-int scaffold_135 . biological_region 86711 86712 0.999 - . logic_name=eponine scaffold_135 . biological_region 86763 86768 0.999 - . logic_name=eponine scaffold_135 . biological_region 86803 86804 0.999 + . logic_name=eponine scaffold_135 . biological_region 86865 86870 0.999 - . logic_name=eponine scaffold_135 . biological_region 86917 86921 0.999 - . logic_name=eponine scaffold_135 . repeat_region 87231 87855 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_134 1 91614 scaffold_134 . biological_region 6011 6014 0.999 + . logic_name=eponine scaffold_134 . biological_region 6134 6136 0.999 + . logic_name=eponine scaffold_134 . biological_region 6784 6790 0.999 - . logic_name=eponine scaffold_134 ensembl protein_coding_gene 2299 3441 . + . ID=Phyra85009;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_134000001;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 2299 3441 . + . ID=Phyra85009;Parent=Phyra85009;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 2299 2310 . + 0 ID=Phyra85009;Parent=Phyra85009;rank=1 scaffold_134 . exon 2299 2310 . + . ID=Phyra85009.1;Parent=Phyra85009;constitutive=1;rank=1 scaffold_134 . CDS 2451 2473 . + 0 ID=Phyra85009;Parent=Phyra85009;rank=2 scaffold_134 . exon 2451 2473 . + . ID=Phyra85009.2;Parent=Phyra85009;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_134 . CDS 2554 2680 . + 0 ID=Phyra85009;Parent=Phyra85009;rank=3 scaffold_134 . exon 2554 2680 . + . ID=Phyra85009.3;Parent=Phyra85009;constitutive=1;ensembl_phase=2;rank=3 scaffold_134 . CDS 2731 2887 . + 0 ID=Phyra85009;Parent=Phyra85009;rank=4 scaffold_134 . exon 2731 2887 . + . ID=Phyra85009.4;Parent=Phyra85009;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_134 . CDS 2957 3042 . + 0 ID=Phyra85009;Parent=Phyra85009;rank=5 scaffold_134 . exon 2957 3042 . + . ID=Phyra85009.5;Parent=Phyra85009;constitutive=1;ensembl_phase=1;rank=5 scaffold_134 . CDS 3127 3441 . + 0 ID=Phyra85009;Parent=Phyra85009;rank=6 scaffold_134 . exon 3127 3441 . + . ID=Phyra85009.6;Parent=Phyra85009;constitutive=1;rank=6 scaffold_134 ensembl protein_coding_gene 3641 5824 . + . ID=Phyra85010;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_134000002;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 3641 5824 . + . ID=Phyra85010;Parent=Phyra85010;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 3641 4126 . + 0 ID=Phyra85010;Parent=Phyra85010;rank=1 scaffold_134 . exon 3641 4126 . + . ID=Phyra85010.1;Parent=Phyra85010;constitutive=1;rank=1 scaffold_134 . CDS 4191 5219 . + 0 ID=Phyra85010;Parent=Phyra85010;rank=2 scaffold_134 . exon 4191 5219 . + . ID=Phyra85010.2;Parent=Phyra85010;constitutive=1;rank=2 scaffold_134 . CDS 5275 5496 . + 0 ID=Phyra85010;Parent=Phyra85010;rank=3 scaffold_134 . exon 5275 5496 . + . ID=Phyra85010.3;Parent=Phyra85010;constitutive=1;rank=3 scaffold_134 . CDS 5558 5671 . + 0 ID=Phyra85010;Parent=Phyra85010;rank=4 scaffold_134 . exon 5558 5671 . + . ID=Phyra85010.4;Parent=Phyra85010;constitutive=1;rank=4 scaffold_134 . CDS 5732 5824 . + 0 ID=Phyra85010;Parent=Phyra85010;rank=5 scaffold_134 . exon 5732 5824 . + . ID=Phyra85010.5;Parent=Phyra85010;constitutive=1;rank=5 scaffold_134 ensembl protein_coding_gene 5850 6863 . - . ID=Phyra85011;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_134000003;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 5850 6863 . - . ID=Phyra85011;Parent=Phyra85011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 5850 6065 . - 0 ID=Phyra85011;Parent=Phyra85011;rank=4 scaffold_134 . exon 5850 6065 . - . ID=Phyra85011.4;Parent=Phyra85011;constitutive=1;rank=4 scaffold_134 . CDS 6193 6303 . - 0 ID=Phyra85011;Parent=Phyra85011;rank=3 scaffold_134 . exon 6193 6303 . - . ID=Phyra85011.3;Parent=Phyra85011;constitutive=1;rank=3 scaffold_134 . CDS 6372 6536 . - 0 ID=Phyra85011;Parent=Phyra85011;rank=2 scaffold_134 . exon 6372 6536 . - . ID=Phyra85011.2;Parent=Phyra85011;constitutive=1;rank=2 scaffold_134 . CDS 6621 6863 . - 0 ID=Phyra85011;Parent=Phyra85011;rank=1 scaffold_134 . exon 6621 6863 . - . ID=Phyra85011.1;Parent=Phyra85011;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 8216 9404 . + . ID=Phyra85012;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_134000004;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 8216 9404 . + . ID=Phyra85012;Parent=Phyra85012;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 8216 8299 . + 0 ID=Phyra85012;Parent=Phyra85012;rank=1 scaffold_134 . exon 8216 8299 . + . ID=Phyra85012.1;Parent=Phyra85012;constitutive=1;rank=1 scaffold_134 . CDS 8370 9404 . + 0 ID=Phyra85012;Parent=Phyra85012;rank=2 scaffold_134 . exon 8370 9404 . + . ID=Phyra85012.2;Parent=Phyra85012;constitutive=1;rank=2 scaffold_134 . repeat_region 10617 10658 . ? . description=trf scaffold_134 ensembl protein_coding_gene 12463 13052 . - . ID=Phyra85015;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_134000007;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 12463 13052 . - . ID=Phyra85015;Parent=Phyra85015;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 12463 12783 . - 0 ID=Phyra85015;Parent=Phyra85015;rank=2 scaffold_134 . exon 12463 12783 . - . ID=Phyra85015.2;Parent=Phyra85015;constitutive=1;rank=2 scaffold_134 . CDS 12858 13052 . - 0 ID=Phyra85015;Parent=Phyra85015;rank=1 scaffold_134 . exon 12858 13052 . - . ID=Phyra85015.1;Parent=Phyra85015;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 9821 10576 . - . ID=Phyra97029;biotype=protein_coding;external_name=C_scaffold_134000002;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 9821 10576 . - . ID=Phyra97029;Parent=Phyra97029;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 9821 10018 . - 0 ID=Phyra97029;Parent=Phyra97029;rank=2 scaffold_134 . exon 9821 10018 . - . ID=Phyra97029.2;Parent=Phyra97029;constitutive=1;rank=2 scaffold_134 . CDS 10091 10576 . - 0 ID=Phyra97029;Parent=Phyra97029;rank=1 scaffold_134 . exon 10091 10576 . - . ID=Phyra97029.1;Parent=Phyra97029;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 10752 12282 . + . ID=Phyra97030;biotype=protein_coding;external_name=C_scaffold_134000003;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 10752 12282 . + . ID=Phyra97030;Parent=Phyra97030;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 10752 11174 . + 0 ID=Phyra97030;Parent=Phyra97030;rank=1 scaffold_134 . exon 10752 11174 . + . ID=Phyra97030.1;Parent=Phyra97030;constitutive=1;rank=1 scaffold_134 . CDS 11236 11516 . + 0 ID=Phyra97030;Parent=Phyra97030;rank=2 scaffold_134 . exon 11236 11516 . + . ID=Phyra97030.2;Parent=Phyra97030;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_134 . CDS 11590 11662 . + 0 ID=Phyra97030;Parent=Phyra97030;rank=3 scaffold_134 . exon 11590 11662 . + . ID=Phyra97030.3;Parent=Phyra97030;constitutive=1;ensembl_phase=2;rank=3 scaffold_134 . CDS 11758 11862 . + 0 ID=Phyra97030;Parent=Phyra97030;rank=4 scaffold_134 . exon 11758 11862 . + . ID=Phyra97030.4;Parent=Phyra97030;constitutive=1;rank=4 scaffold_134 . CDS 11935 12282 . + 0 ID=Phyra97030;Parent=Phyra97030;rank=5 scaffold_134 . exon 11935 12282 . + . ID=Phyra97030.5;Parent=Phyra97030;constitutive=1;rank=5 scaffold_134 . biological_region 19824 19828 0.999 + . logic_name=eponine scaffold_134 . biological_region 21536 21539 0.999 + . logic_name=eponine scaffold_134 . repeat_region 21831 21880 . ? . description=dust scaffold_134 . biological_region 22525 22525 0.999 - . logic_name=eponine scaffold_134 . biological_region 22545 22549 0.999 - . logic_name=eponine scaffold_134 . repeat_region 22849 22898 . ? . description=dust scaffold_134 . repeat_region 24594 24602 . ? . description=dust scaffold_134 . biological_region 26766 26768 0.999 + . logic_name=eponine scaffold_134 . biological_region 27400 27400 0.999 + . logic_name=eponine scaffold_134 ensembl protein_coding_gene 18374 20113 . - . ID=Phyra41309;biotype=protein_coding;external_name=gwEuk.134.9.1;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 18374 20113 . - . ID=Phyra41309;Parent=Phyra41309;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 18374 20113 . - 0 ID=Phyra41309;Parent=Phyra41309;rank=1 scaffold_134 . exon 18374 20113 . - . ID=Phyra41309.1;Parent=Phyra41309;constitutive=1;rank=1 scaffold_134 ensembl pseudogene 20418 21692 . + . ID=Phyra41314;biotype=pseudogene;external_name=gwEuk.134.14.1;logic_name=jgi_phyra1 scaffold_134 ensembl pseudogene 20418 21692 . + . ID=Phyra41314;Parent=Phyra41314;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_134 . exon 20418 20998 . + . ID=Phyra41314.1;Parent=Phyra41314;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_134 . exon 21059 21130 . + . ID=Phyra41314.2;Parent=Phyra41314;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_134 . exon 21211 21291 . + . ID=Phyra41314.3;Parent=Phyra41314;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_134 . exon 21363 21692 . + . ID=Phyra41314.4;Parent=Phyra41314;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_134 ensembl protein_coding_gene 21743 22933 . - . ID=Phyra97031;biotype=protein_coding;external_name=C_scaffold_134000004;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 21743 22933 . - . ID=Phyra97031;Parent=Phyra97031;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 21743 21762 . - 0 ID=Phyra97031;Parent=Phyra97031;rank=3 scaffold_134 . exon 21743 21762 . - . ID=Phyra97031.3;Parent=Phyra97031;constitutive=1;ensembl_phase=1;rank=3 scaffold_134 . CDS 21916 22846 . - 0 ID=Phyra97031;Parent=Phyra97031;rank=2 scaffold_134 . exon 21916 22846 . - . ID=Phyra97031.2;Parent=Phyra97031;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_134 . CDS 22925 22933 . - 0 ID=Phyra97031;Parent=Phyra97031;rank=1 scaffold_134 . exon 22925 22933 . - . ID=Phyra97031.1;Parent=Phyra97031;constitutive=1;rank=1 scaffold_134 . repeat_region 35800 35819 . ? . description=trf scaffold_134 ensembl protein_coding_gene 34981 37488 . - . ID=Phyra85019;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_134000011;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 34981 37488 . - . ID=Phyra85019;Parent=Phyra85019;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 34981 35328 . - 0 ID=Phyra85019;Parent=Phyra85019;rank=3 scaffold_134 . exon 34981 35328 . - . ID=Phyra85019.3;Parent=Phyra85019;constitutive=1;rank=3 scaffold_134 . CDS 35363 35985 . - 0 ID=Phyra85019;Parent=Phyra85019;rank=2 scaffold_134 . exon 35363 35985 . - . ID=Phyra85019.2;Parent=Phyra85019;constitutive=1;ensembl_phase=1;rank=2 scaffold_134 . CDS 36441 37488 . - 0 ID=Phyra85019;Parent=Phyra85019;rank=1 scaffold_134 . exon 36441 37488 . - . ID=Phyra85019.1;Parent=Phyra85019;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_134 . biological_region 36960 36963 0.999 - . logic_name=eponine scaffold_134 . biological_region 37125 37129 0.999 - . logic_name=eponine scaffold_134 . biological_region 37394 37396 0.999 + . logic_name=eponine scaffold_134 . repeat_region 37579 37628 . ? . description=dust scaffold_134 . biological_region 39886 39887 0.999 - . logic_name=eponine scaffold_134 . repeat_region 42079 42092 . ? . description=dust scaffold_134 . repeat_region 45681 45689 . ? . description=dust scaffold_134 ensembl protein_coding_gene 38232 39350 . - . ID=Phyra85020;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_134000012;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 38232 39350 . - . ID=Phyra85020;Parent=Phyra85020;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 38232 39350 . - 0 ID=Phyra85020;Parent=Phyra85020;rank=1 scaffold_134 . exon 38232 39350 . - . ID=Phyra85020.1;Parent=Phyra85020;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 50977 52023 . - . ID=Phyra72295;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_134000001;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 50977 52023 . - . ID=Phyra72295;Parent=Phyra72295;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 50977 51672 . - 0 ID=Phyra72295;Parent=Phyra72295;rank=3 scaffold_134 . exon 50977 51672 . - . ID=Phyra72295.3;Parent=Phyra72295;constitutive=1;rank=3 scaffold_134 . CDS 51736 51867 . - 0 ID=Phyra72295;Parent=Phyra72295;rank=2 scaffold_134 . exon 51736 51867 . - . ID=Phyra72295.2;Parent=Phyra72295;constitutive=1;rank=2 scaffold_134 . CDS 51931 52023 . - 0 ID=Phyra72295;Parent=Phyra72295;rank=1 scaffold_134 . exon 51931 52023 . - . ID=Phyra72295.1;Parent=Phyra72295;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 52169 54966 . + . ID=Phyra97032;biotype=protein_coding;external_name=C_scaffold_134000005;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 52169 54966 . + . ID=Phyra97032;Parent=Phyra97032;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 52169 52526 . + 0 ID=Phyra97032;Parent=Phyra97032;rank=1 scaffold_134 . exon 52169 52526 . + . ID=Phyra97032.1;Parent=Phyra97032;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_134 . CDS 52883 53086 . + 0 ID=Phyra97032;Parent=Phyra97032;rank=2 scaffold_134 . exon 52883 53086 . + . ID=Phyra97032.2;Parent=Phyra97032;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_134 . CDS 53141 53989 . + 0 ID=Phyra97032;Parent=Phyra97032;rank=3 scaffold_134 . exon 53141 53989 . + . ID=Phyra97032.3;Parent=Phyra97032;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_134 . CDS 54131 54226 . + 0 ID=Phyra97032;Parent=Phyra97032;rank=4 scaffold_134 . exon 54131 54226 . + . ID=Phyra97032.4;Parent=Phyra97032;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_134 . CDS 54347 54421 . + 0 ID=Phyra97032;Parent=Phyra97032;rank=5 scaffold_134 . exon 54347 54421 . + . ID=Phyra97032.5;Parent=Phyra97032;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_134 . CDS 54505 54596 . + 0 ID=Phyra97032;Parent=Phyra97032;rank=6 scaffold_134 . exon 54505 54596 . + . ID=Phyra97032.6;Parent=Phyra97032;constitutive=1;ensembl_phase=1;rank=6 scaffold_134 . CDS 54679 54966 . + 0 ID=Phyra97032;Parent=Phyra97032;rank=7 scaffold_134 . exon 54679 54966 . + . ID=Phyra97032.7;Parent=Phyra97032;constitutive=1;rank=7 scaffold_134 . biological_region 56166 56170 0.999 + . logic_name=eponine scaffold_134 . biological_region 56193 56198 0.999 + . logic_name=eponine scaffold_134 . biological_region 56694 56696 0.999 + . logic_name=eponine scaffold_134 . biological_region 57382 57388 0.999 - . logic_name=eponine scaffold_134 . biological_region 57689 57694 0.999 - . logic_name=eponine scaffold_134 ensembl protein_coding_gene 55413 56845 . - . ID=Phyra72296;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_134000002;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 55413 56845 . - . ID=Phyra72296;Parent=Phyra72296;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 55413 55535 . - 0 ID=Phyra72296;Parent=Phyra72296;rank=4 scaffold_134 . exon 55413 55535 . - . ID=Phyra72296.4;Parent=Phyra72296;constitutive=1;rank=4 scaffold_134 . CDS 55615 55720 . - 0 ID=Phyra72296;Parent=Phyra72296;rank=3 scaffold_134 . exon 55615 55720 . - . ID=Phyra72296.3;Parent=Phyra72296;constitutive=1;ensembl_phase=2;rank=3 scaffold_134 . CDS 55821 56771 . - 0 ID=Phyra72296;Parent=Phyra72296;rank=2 scaffold_134 . exon 55821 56771 . - . ID=Phyra72296.2;Parent=Phyra72296;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_134 . CDS 56814 56845 . - 0 ID=Phyra72296;Parent=Phyra72296;rank=1 scaffold_134 . exon 56814 56845 . - . ID=Phyra72296.1;Parent=Phyra72296;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_134 ensembl protein_coding_gene 57134 61459 . + . ID=Phyra85024;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_134000016;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 57134 61459 . + . ID=Phyra85024;Parent=Phyra85024;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 57134 58424 . + 0 ID=Phyra85024;Parent=Phyra85024;rank=1 scaffold_134 . exon 57134 58424 . + . ID=Phyra85024.1;Parent=Phyra85024;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_134 . CDS 58510 59188 . + 0 ID=Phyra85024;Parent=Phyra85024;rank=2 scaffold_134 . exon 58510 59188 . + . ID=Phyra85024.2;Parent=Phyra85024;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_134 . CDS 59266 59296 . + 0 ID=Phyra85024;Parent=Phyra85024;rank=3 scaffold_134 . exon 59266 59296 . + . ID=Phyra85024.3;Parent=Phyra85024;constitutive=1;ensembl_phase=2;rank=3 scaffold_134 . CDS 59409 59799 . + 0 ID=Phyra85024;Parent=Phyra85024;rank=4 scaffold_134 . exon 59409 59799 . + . ID=Phyra85024.4;Parent=Phyra85024;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_134 . CDS 59886 61267 . + 0 ID=Phyra85024;Parent=Phyra85024;rank=5 scaffold_134 . exon 59886 61267 . + . ID=Phyra85024.5;Parent=Phyra85024;constitutive=1;ensembl_phase=1;rank=5 scaffold_134 . CDS 61346 61459 . + 0 ID=Phyra85024;Parent=Phyra85024;rank=6 scaffold_134 . exon 61346 61459 . + . ID=Phyra85024.6;Parent=Phyra85024;constitutive=1;rank=6 scaffold_134 . repeat_region 71215 71248 . ? . description=trf scaffold_134 . repeat_region 72712 72721 . ? . description=dust scaffold_134 ensembl protein_coding_gene 69953 71293 . + . ID=Phyra72297;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_134000003;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 69953 71293 . + . ID=Phyra72297;Parent=Phyra72297;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 69953 71293 . + 0 ID=Phyra72297;Parent=Phyra72297;rank=1 scaffold_134 . exon 69953 71293 . + . ID=Phyra72297.1;Parent=Phyra72297;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 72934 74142 . - . ID=Phyra85026;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_134000018;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 72934 74142 . - . ID=Phyra85026;Parent=Phyra85026;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 72934 73231 . - 0 ID=Phyra85026;Parent=Phyra85026;rank=2 scaffold_134 . exon 72934 73231 . - . ID=Phyra85026.2;Parent=Phyra85026;constitutive=1;ensembl_phase=2;rank=2 scaffold_134 . CDS 73322 74142 . - 0 ID=Phyra85026;Parent=Phyra85026;rank=1 scaffold_134 ensembl protein_coding_gene 72270 72488 . + . ID=Phyra97034;biotype=protein_coding;external_name=C_scaffold_134000007;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 72270 72488 . + . ID=Phyra97034;Parent=Phyra97034;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 72270 72488 . + 0 ID=Phyra97034;Parent=Phyra97034;rank=1 scaffold_134 . exon 72270 72488 . + . ID=Phyra97034.1;Parent=Phyra97034;constitutive=1;rank=1 scaffold_134 . biological_region 78384 78385 0.999 - . logic_name=eponine scaffold_134 . biological_region 78440 78442 0.999 + . logic_name=eponine scaffold_134 . biological_region 78459 78466 0.999 + . logic_name=eponine scaffold_134 . biological_region 78478 78482 0.999 - . logic_name=eponine scaffold_134 ensembl protein_coding_gene 76794 78158 . - . ID=Phyra72298;biotype=protein_coding;description=Enolase [Source:UniProtKB/TrEMBL%3BAcc:A7XG38];external_name=ENL;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 76794 78158 . - . ID=Phyra72298;Parent=Phyra72298;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 76794 78158 . - 0 ID=Phyra72298;Parent=Phyra72298;rank=1 scaffold_134 . exon 76794 78158 . - . ID=Phyra72298.1;Parent=Phyra72298;constitutive=1;rank=1 scaffold_134 . exon 73322 74142 . - . ID=Phyra85026.1;Parent=Phyra85026;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_134 ensembl protein_coding_gene 76079 76672 . + . ID=Phyra85028;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_134000020;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 76079 76672 . + . ID=Phyra85028;Parent=Phyra85028;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 76079 76169 . + 0 ID=Phyra85028;Parent=Phyra85028;rank=1 scaffold_134 . exon 76079 76169 . + . ID=Phyra85028.1;Parent=Phyra85028;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_134 . CDS 76254 76672 . + 0 ID=Phyra85028;Parent=Phyra85028;rank=2 scaffold_134 . exon 76254 76672 . + . ID=Phyra85028.2;Parent=Phyra85028;constitutive=1;ensembl_phase=1;rank=2 scaffold_134 ensembl protein_coding_gene 74336 75858 . - . ID=Phyra97038;biotype=protein_coding;external_name=C_scaffold_134000011;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 74336 75858 . - . ID=Phyra97038;Parent=Phyra97038;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 74336 74395 . - 0 ID=Phyra97038;Parent=Phyra97038;rank=8 scaffold_134 . exon 74336 74395 . - . ID=Phyra97038.8;Parent=Phyra97038;constitutive=1;rank=8 scaffold_134 . CDS 74461 74696 . - 0 ID=Phyra97038;Parent=Phyra97038;rank=7 scaffold_134 . exon 74461 74696 . - . ID=Phyra97038.7;Parent=Phyra97038;constitutive=1;ensembl_phase=1;rank=7 scaffold_134 . CDS 74769 74871 . - 0 ID=Phyra97038;Parent=Phyra97038;rank=6 scaffold_134 . exon 74769 74871 . - . ID=Phyra97038.6;Parent=Phyra97038;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_134 . CDS 74934 75029 . - 0 ID=Phyra97038;Parent=Phyra97038;rank=5 scaffold_134 . exon 74934 75029 . - . ID=Phyra97038.5;Parent=Phyra97038;constitutive=1;rank=5 scaffold_134 . CDS 75066 75347 . - 0 ID=Phyra97038;Parent=Phyra97038;rank=4 scaffold_134 . exon 75066 75347 . - . ID=Phyra97038.4;Parent=Phyra97038;constitutive=1;rank=4 scaffold_134 . CDS 75381 75607 . - 0 ID=Phyra97038;Parent=Phyra97038;rank=3 scaffold_134 . exon 75381 75607 . - . ID=Phyra97038.3;Parent=Phyra97038;constitutive=1;ensembl_phase=1;rank=3 scaffold_134 . CDS 75674 75781 . - 0 ID=Phyra97038;Parent=Phyra97038;rank=2 scaffold_134 . exon 75674 75781 . - . ID=Phyra97038.2;Parent=Phyra97038;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_134 . CDS 75843 75858 . - 0 ID=Phyra97038;Parent=Phyra97038;rank=1 scaffold_134 . exon 75843 75858 . - . ID=Phyra97038.1;Parent=Phyra97038;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_134 . repeat_region 83761 83771 . ? . description=dust scaffold_134 . repeat_region 89594 89603 . ? . description=dust scaffold_134 . repeat_region 90480 90621 . - . description=Polinton-1_PI scaffold_134 . repeat_region 90649 90924 . + . description=Polinton-1_PI scaffold_134 . repeat_region 90952 91323 . - . description=Polinton-1_PI scaffold_134 ensembl pseudogene 86863 87974 . - . ID=Phyra41348;biotype=pseudogene;external_name=gwEuk.134.48.1;logic_name=jgi_phyra1 scaffold_134 ensembl pseudogene 86863 87974 . - . ID=Phyra41348;Parent=Phyra41348;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_134 . exon 86863 87348 . - . ID=Phyra41348.2;Parent=Phyra41348;constitutive=1;rank=2 scaffold_134 . exon 87420 87974 . - . ID=Phyra41348.1;Parent=Phyra41348;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 82636 84060 . - . ID=Phyra85030;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_134000022;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 82636 84060 . - . ID=Phyra85030;Parent=Phyra85030;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 82636 82852 . - 0 ID=Phyra85030;Parent=Phyra85030;rank=4 scaffold_134 . exon 82636 82852 . - . ID=Phyra85030.4;Parent=Phyra85030;constitutive=1;ensembl_phase=2;rank=4 scaffold_134 . CDS 82932 83557 . - 0 ID=Phyra85030;Parent=Phyra85030;rank=3 scaffold_134 . exon 82932 83557 . - . ID=Phyra85030.3;Parent=Phyra85030;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_134 . CDS 83634 83724 . - 0 ID=Phyra85030;Parent=Phyra85030;rank=2 scaffold_134 . exon 83634 83724 . - . ID=Phyra85030.2;Parent=Phyra85030;constitutive=1;ensembl_phase=2;rank=2 scaffold_134 . CDS 83792 84060 . - 0 ID=Phyra85030;Parent=Phyra85030;rank=1 scaffold_134 . exon 83792 84060 . - . ID=Phyra85030.1;Parent=Phyra85030;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_134 ensembl protein_coding_gene 84194 85630 . + . ID=Phyra85031;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_134000023;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 84194 85630 . + . ID=Phyra85031;Parent=Phyra85031;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 84194 84642 . + 0 ID=Phyra85031;Parent=Phyra85031;rank=1 scaffold_134 . exon 84194 84642 . + . ID=Phyra85031.1;Parent=Phyra85031;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_134 . CDS 84724 85630 . + 0 ID=Phyra85031;Parent=Phyra85031;rank=2 scaffold_134 . exon 84724 85630 . + . ID=Phyra85031.2;Parent=Phyra85031;constitutive=1;ensembl_phase=2;rank=2 scaffold_134 ensembl protein_coding_gene 85808 86550 . - . ID=Phyra97043;biotype=protein_coding;external_name=C_scaffold_134000016;logic_name=jgi_phyra1 scaffold_134 ensembl transcript 85808 86550 . - . ID=Phyra97043;Parent=Phyra97043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_134 . CDS 85808 86391 . - 0 ID=Phyra97043;Parent=Phyra97043;rank=2 scaffold_134 . exon 85808 86391 . - . ID=Phyra97043.2;Parent=Phyra97043;constitutive=1;ensembl_phase=1;rank=2 scaffold_134 . CDS 86463 86550 . - 0 ID=Phyra97043;Parent=Phyra97043;rank=1 scaffold_134 . exon 86463 86550 . - . ID=Phyra97043.1;Parent=Phyra97043;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_130 1 94934 scaffold_130 . biological_region 225 229 0.999 + . logic_name=eponine scaffold_130 . repeat_region 234 275 . ? . description=trf scaffold_130 . biological_region 1521 1524 0.999 + . logic_name=eponine scaffold_130 . repeat_region 2012 2038 . ? . description=trf scaffold_130 . repeat_region 2420 2448 . ? . description=trf scaffold_130 . biological_region 2868 2872 0.999 + . logic_name=eponine scaffold_130 . repeat_region 4003 5376 . ? . description=trf scaffold_130 . repeat_region 5377 23373 . ? . description=dust scaffold_130 ensembl protein_coding_gene 37 996 . - . ID=Phyra84900;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000001;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 37 996 . - . ID=Phyra84900;Parent=Phyra84900;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 37 996 . - 0 ID=Phyra84900;Parent=Phyra84900;rank=1 scaffold_130 . exon 37 996 . - . ID=Phyra84900.1;Parent=Phyra84900;constitutive=1;rank=1 scaffold_130 ensembl protein_coding_gene 2457 26795 . + . ID=Phyra84901;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000002;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 2457 26795 . + . ID=Phyra84901;Parent=Phyra84901;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 2457 5351 . + 0 ID=Phyra84901;Parent=Phyra84901;rank=1 scaffold_130 . exon 2457 5351 . + . ID=Phyra84901.1;Parent=Phyra84901;constitutive=1;rank=1 scaffold_130 . CDS 23391 26795 . + 0 ID=Phyra84901;Parent=Phyra84901;rank=2 scaffold_130 . repeat_region 5377 23373 . ? . description=dust scaffold_130 . repeat_region 23374 24017 . ? . description=trf scaffold_130 . repeat_region 23390 23456 . ? . description=trf scaffold_130 . repeat_region 23399 24017 . ? . description=trf scaffold_130 . repeat_region 23408 23606 . ? . description=trf scaffold_130 . repeat_region 23477 23504 . ? . description=trf scaffold_130 . repeat_region 23558 23615 . ? . description=trf scaffold_130 . repeat_region 23636 23663 . ? . description=trf scaffold_130 . repeat_region 23716 23752 . ? . description=dust scaffold_130 . repeat_region 23717 23783 . ? . description=trf scaffold_130 . repeat_region 23822 24008 . ? . description=trf scaffold_130 . repeat_region 23876 23933 . ? . description=trf scaffold_130 . repeat_region 23954 23981 . ? . description=trf scaffold_130 ensembl protein_coding_gene 2457 26795 . + . ID=Phyra84901;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000002;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 2457 26795 . + . ID=Phyra84901;Parent=Phyra84901;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 2457 5351 . + 0 ID=Phyra84901;Parent=Phyra84901;rank=1 scaffold_130 . CDS 23391 26795 . + 0 ID=Phyra84901;Parent=Phyra84901;rank=2 scaffold_130 . exon 23391 26795 . + . ID=Phyra84901.2;Parent=Phyra84901;constitutive=1;rank=2 scaffold_130 ensembl protein_coding_gene 27060 29641 . - . ID=Phyra84902;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000003;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 27060 29641 . - . ID=Phyra84902;Parent=Phyra84902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 27060 27307 . - 0 ID=Phyra84902;Parent=Phyra84902;rank=11 scaffold_130 . exon 27060 27307 . - . ID=Phyra84902.11;Parent=Phyra84902;constitutive=1;ensembl_phase=1;rank=11 scaffold_130 . CDS 27353 27575 . - 0 ID=Phyra84902;Parent=Phyra84902;rank=10 scaffold_130 . exon 27353 27575 . - . ID=Phyra84902.10;Parent=Phyra84902;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_130 . CDS 27645 27670 . - 0 ID=Phyra84902;Parent=Phyra84902;rank=9 scaffold_130 . exon 27645 27670 . - . ID=Phyra84902.9;Parent=Phyra84902;constitutive=1;ensembl_phase=1;rank=9 scaffold_130 . CDS 27776 27929 . - 0 ID=Phyra84902;Parent=Phyra84902;rank=8 scaffold_130 . exon 27776 27929 . - . ID=Phyra84902.8;Parent=Phyra84902;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_130 . CDS 28008 28154 . - 0 ID=Phyra84902;Parent=Phyra84902;rank=7 scaffold_130 . exon 28008 28154 . - . ID=Phyra84902.7;Parent=Phyra84902;constitutive=1;rank=7 scaffold_130 . CDS 28229 28461 . - 0 ID=Phyra84902;Parent=Phyra84902;rank=6 scaffold_130 . exon 28229 28461 . - . ID=Phyra84902.6;Parent=Phyra84902;constitutive=1;ensembl_phase=1;rank=6 scaffold_130 . CDS 28524 28588 . - 0 ID=Phyra84902;Parent=Phyra84902;rank=5 scaffold_130 . CDS 28676 28824 . - 0 ID=Phyra84902;Parent=Phyra84902;rank=4 scaffold_130 . CDS 29005 29056 . - 0 ID=Phyra84902;Parent=Phyra84902;rank=3 scaffold_130 . CDS 29116 29162 . - 0 ID=Phyra84902;Parent=Phyra84902;rank=2 scaffold_130 . CDS 29375 29641 . - 0 ID=Phyra84902;Parent=Phyra84902;rank=1 scaffold_130 . biological_region 30619 30621 0.999 + . logic_name=eponine scaffold_130 . biological_region 31318 31318 0.999 - . logic_name=eponine scaffold_130 . biological_region 31372 31376 0.999 + . logic_name=eponine scaffold_130 . biological_region 31425 31429 0.999 - . logic_name=eponine scaffold_130 . biological_region 31491 31491 0.999 - . logic_name=eponine scaffold_130 . biological_region 35065 35066 0.999 - . logic_name=eponine scaffold_130 . biological_region 35464 35466 0.999 - . logic_name=eponine scaffold_130 . exon 28524 28588 . - . ID=Phyra84902.5;Parent=Phyra84902;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_130 . exon 28676 28824 . - . ID=Phyra84902.4;Parent=Phyra84902;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_130 . exon 29005 29056 . - . ID=Phyra84902.3;Parent=Phyra84902;constitutive=1;ensembl_phase=2;rank=3 scaffold_130 . exon 29116 29162 . - . ID=Phyra84902.2;Parent=Phyra84902;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_130 . exon 29375 29641 . - . ID=Phyra84902.1;Parent=Phyra84902;constitutive=1;rank=1 scaffold_130 ensembl protein_coding_gene 33333 35271 . - . ID=Phyra84905;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000006;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 33333 35271 . - . ID=Phyra84905;Parent=Phyra84905;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 33333 33433 . - 0 ID=Phyra84905;Parent=Phyra84905;rank=2 scaffold_130 . exon 33333 33433 . - . ID=Phyra84905.2;Parent=Phyra84905;constitutive=1;ensembl_phase=1;rank=2 scaffold_130 . CDS 33513 35271 . - 0 ID=Phyra84905;Parent=Phyra84905;rank=1 scaffold_130 . exon 33513 35271 . - . ID=Phyra84905.1;Parent=Phyra84905;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_130 ensembl protein_coding_gene 35380 36957 . + . ID=Phyra84906;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000007;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 35380 36957 . + . ID=Phyra84906;Parent=Phyra84906;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 35380 36466 . + 0 ID=Phyra84906;Parent=Phyra84906;rank=1 scaffold_130 . exon 35380 36466 . + . ID=Phyra84906.1;Parent=Phyra84906;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_130 . CDS 36552 36673 . + 0 ID=Phyra84906;Parent=Phyra84906;rank=2 scaffold_130 . exon 36552 36673 . + . ID=Phyra84906.2;Parent=Phyra84906;constitutive=1;ensembl_phase=1;rank=2 scaffold_130 . CDS 36744 36814 . + 0 ID=Phyra84906;Parent=Phyra84906;rank=3 scaffold_130 . exon 36744 36814 . + . ID=Phyra84906.3;Parent=Phyra84906;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_130 . CDS 36906 36957 . + 0 ID=Phyra84906;Parent=Phyra84906;rank=4 scaffold_130 . exon 36906 36957 . + . ID=Phyra84906.4;Parent=Phyra84906;constitutive=1;ensembl_phase=2;rank=4 scaffold_130 ensembl protein_coding_gene 37094 38733 . - . ID=Phyra84907;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000008;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 37094 38733 . - . ID=Phyra84907;Parent=Phyra84907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 37094 37267 . - 0 ID=Phyra84907;Parent=Phyra84907;rank=5 scaffold_130 . exon 37094 37267 . - . ID=Phyra84907.5;Parent=Phyra84907;constitutive=1;rank=5 scaffold_130 . CDS 37350 37468 . - 0 ID=Phyra84907;Parent=Phyra84907;rank=4 scaffold_130 . exon 37350 37468 . - . ID=Phyra84907.4;Parent=Phyra84907;constitutive=1;ensembl_phase=1;rank=4 scaffold_130 . CDS 37542 37976 . - 0 ID=Phyra84907;Parent=Phyra84907;rank=3 scaffold_130 . exon 37542 37976 . - . ID=Phyra84907.3;Parent=Phyra84907;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_130 . CDS 38013 38172 . - 0 ID=Phyra84907;Parent=Phyra84907;rank=2 scaffold_130 . CDS 38248 38733 . - 0 ID=Phyra84907;Parent=Phyra84907;rank=1 scaffold_130 ensembl protein_coding_gene 31068 33163 . + . ID=Phyra96986;biotype=protein_coding;external_name=C_scaffold_130000002;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 31068 33163 . + . ID=Phyra96986;Parent=Phyra96986;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 31068 31948 . + 0 ID=Phyra96986;Parent=Phyra96986;rank=1 scaffold_130 . exon 31068 31948 . + . ID=Phyra96986.1;Parent=Phyra96986;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_130 . CDS 32148 32325 . + 0 ID=Phyra96986;Parent=Phyra96986;rank=2 scaffold_130 . exon 32148 32325 . + . ID=Phyra96986.2;Parent=Phyra96986;constitutive=1;ensembl_phase=2;rank=2 scaffold_130 . CDS 32408 32661 . + 0 ID=Phyra96986;Parent=Phyra96986;rank=3 scaffold_130 . exon 32408 32661 . + . ID=Phyra96986.3;Parent=Phyra96986;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_130 . CDS 32743 32916 . + 0 ID=Phyra96986;Parent=Phyra96986;rank=4 scaffold_130 . exon 32743 32916 . + . ID=Phyra96986.4;Parent=Phyra96986;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_130 . CDS 32977 33163 . + 0 ID=Phyra96986;Parent=Phyra96986;rank=5 scaffold_130 . exon 32977 33163 . + . ID=Phyra96986.5;Parent=Phyra96986;constitutive=1;ensembl_phase=2;rank=5 scaffold_130 . repeat_region 42921 43435 . ? . description=trf scaffold_130 . exon 38013 38172 . - . ID=Phyra84907.2;Parent=Phyra84907;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_130 . exon 38248 38733 . - . ID=Phyra84907.1;Parent=Phyra84907;constitutive=1;rank=1 scaffold_130 ensembl protein_coding_gene 43999 44844 . - . ID=Phyra84910;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000011;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 43999 44844 . - . ID=Phyra84910;Parent=Phyra84910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 43999 44844 . - 0 ID=Phyra84910;Parent=Phyra84910;rank=1 scaffold_130 . exon 43999 44844 . - . ID=Phyra84910.1;Parent=Phyra84910;constitutive=1;rank=1 scaffold_130 ensembl protein_coding_gene 39267 43826 . + . ID=Phyra96993;biotype=protein_coding;external_name=C_scaffold_130000009;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 39267 43826 . + . ID=Phyra96993;Parent=Phyra96993;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 39267 39653 . + 0 ID=Phyra96993;Parent=Phyra96993;rank=1 scaffold_130 . exon 39267 39653 . + . ID=Phyra96993.1;Parent=Phyra96993;constitutive=1;rank=1 scaffold_130 . CDS 39675 39814 . + 0 ID=Phyra96993;Parent=Phyra96993;rank=2 scaffold_130 . exon 39675 39814 . + . ID=Phyra96993.2;Parent=Phyra96993;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_130 . CDS 40193 40670 . + 0 ID=Phyra96993;Parent=Phyra96993;rank=3 scaffold_130 . exon 40193 40670 . + . ID=Phyra96993.3;Parent=Phyra96993;constitutive=1;ensembl_phase=2;rank=3 scaffold_130 . CDS 40713 40897 . + 0 ID=Phyra96993;Parent=Phyra96993;rank=4 scaffold_130 . exon 40713 40897 . + . ID=Phyra96993.4;Parent=Phyra96993;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_130 . CDS 40979 41080 . + 0 ID=Phyra96993;Parent=Phyra96993;rank=5 scaffold_130 . exon 40979 41080 . + . ID=Phyra96993.5;Parent=Phyra96993;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_130 . CDS 41126 41320 . + 0 ID=Phyra96993;Parent=Phyra96993;rank=6 scaffold_130 . exon 41126 41320 . + . ID=Phyra96993.6;Parent=Phyra96993;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_130 . CDS 41399 41540 . + 0 ID=Phyra96993;Parent=Phyra96993;rank=7 scaffold_130 . exon 41399 41540 . + . ID=Phyra96993.7;Parent=Phyra96993;constitutive=1;ensembl_phase=2;rank=7 scaffold_130 . CDS 41658 41698 . + 0 ID=Phyra96993;Parent=Phyra96993;rank=8 scaffold_130 . exon 41658 41698 . + . ID=Phyra96993.8;Parent=Phyra96993;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_130 . CDS 41888 42163 . + 0 ID=Phyra96993;Parent=Phyra96993;rank=9 scaffold_130 . exon 41888 42163 . + . ID=Phyra96993.9;Parent=Phyra96993;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_130 . CDS 42242 42401 . + 0 ID=Phyra96993;Parent=Phyra96993;rank=10 scaffold_130 . exon 42242 42401 . + . ID=Phyra96993.10;Parent=Phyra96993;constitutive=1;ensembl_phase=2;rank=10 scaffold_130 . CDS 42873 43457 . + 0 ID=Phyra96993;Parent=Phyra96993;rank=11 scaffold_130 . exon 42873 43457 . + . ID=Phyra96993.11;Parent=Phyra96993;constitutive=1;rank=11 scaffold_130 . CDS 43512 43826 . + 0 ID=Phyra96993;Parent=Phyra96993;rank=12 scaffold_130 . exon 43512 43826 . + . ID=Phyra96993.12;Parent=Phyra96993;constitutive=1;rank=12 scaffold_130 . biological_region 50371 50374 0.999 + . logic_name=eponine scaffold_130 . biological_region 51743 51747 0.999 + . logic_name=eponine scaffold_130 . biological_region 52778 52781 0.999 - . logic_name=eponine scaffold_130 . biological_region 52927 52931 0.999 + . logic_name=eponine scaffold_130 . biological_region 53158 53159 0.999 + . logic_name=eponine scaffold_130 . biological_region 53161 53163 0.999 - . logic_name=eponine scaffold_130 . biological_region 53172 53177 0.999 + . logic_name=eponine scaffold_130 . repeat_region 53346 53359 . ? . description=dust scaffold_130 . repeat_region 55553 55584 . ? . description=dust scaffold_130 . biological_region 55577 55581 0.999 - . logic_name=eponine scaffold_130 . biological_region 55609 55610 0.999 - . logic_name=eponine scaffold_130 ensembl protein_coding_gene 51670 52179 . + . ID=Phyra84911;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000012;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 51670 52179 . + . ID=Phyra84911;Parent=Phyra84911;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 51670 52179 . + 0 ID=Phyra84911;Parent=Phyra84911;rank=1 scaffold_130 . exon 51670 52179 . + . ID=Phyra84911.1;Parent=Phyra84911;constitutive=1;rank=1 scaffold_130 ensembl protein_coding_gene 52239 53333 . - . ID=Phyra84912;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000013;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 52239 53333 . - . ID=Phyra84912;Parent=Phyra84912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 52239 53333 . - 0 ID=Phyra84912;Parent=Phyra84912;rank=1 scaffold_130 . exon 52239 53333 . - . ID=Phyra84912.1;Parent=Phyra84912;constitutive=1;rank=1 scaffold_130 ensembl protein_coding_gene 53671 54467 . + . ID=Phyra84913;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000014;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 53671 54467 . + . ID=Phyra84913;Parent=Phyra84913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 53671 53688 . + 0 ID=Phyra84913;Parent=Phyra84913;rank=1 scaffold_130 . exon 53671 53688 . + . ID=Phyra84913.1;Parent=Phyra84913;constitutive=1;rank=1 scaffold_130 . CDS 53798 53960 . + 0 ID=Phyra84913;Parent=Phyra84913;rank=2 scaffold_130 . exon 53798 53960 . + . ID=Phyra84913.2;Parent=Phyra84913;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_130 . CDS 53986 54467 . + 0 ID=Phyra84913;Parent=Phyra84913;rank=3 scaffold_130 . exon 53986 54467 . + . ID=Phyra84913.3;Parent=Phyra84913;constitutive=1;ensembl_phase=1;rank=3 scaffold_130 ensembl protein_coding_gene 55523 57424 . - . ID=Phyra84914;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000015;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 55523 57424 . - . ID=Phyra84914;Parent=Phyra84914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 55523 56538 . - 0 ID=Phyra84914;Parent=Phyra84914;rank=4 scaffold_130 . exon 55523 56538 . - . ID=Phyra84914.4;Parent=Phyra84914;constitutive=1;ensembl_phase=1;rank=4 scaffold_130 . CDS 56649 56886 . - 0 ID=Phyra84914;Parent=Phyra84914;rank=3 scaffold_130 . exon 56649 56886 . - . ID=Phyra84914.3;Parent=Phyra84914;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_130 . CDS 57014 57186 . - 0 ID=Phyra84914;Parent=Phyra84914;rank=2 scaffold_130 . CDS 57289 57424 . - 0 ID=Phyra84914;Parent=Phyra84914;rank=1 scaffold_130 . exon 57014 57186 . - . ID=Phyra84914.2;Parent=Phyra84914;constitutive=1;ensembl_phase=1;rank=2 scaffold_130 . exon 57289 57424 . - . ID=Phyra84914.1;Parent=Phyra84914;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_130 ensembl protein_coding_gene 61463 62161 . + . ID=Phyra84915;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000016;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 61463 62161 . + . ID=Phyra84915;Parent=Phyra84915;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 61463 62161 . + 0 ID=Phyra84915;Parent=Phyra84915;rank=1 scaffold_130 . exon 61463 62161 . + . ID=Phyra84915.1;Parent=Phyra84915;constitutive=1;rank=1 scaffold_130 ensembl protein_coding_gene 63596 68321 . + . ID=Phyra84916;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000017;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 63596 68321 . + . ID=Phyra84916;Parent=Phyra84916;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 63596 66823 . + 0 ID=Phyra84916;Parent=Phyra84916;rank=1 scaffold_130 . exon 63596 66823 . + . ID=Phyra84916.1;Parent=Phyra84916;constitutive=1;rank=1 scaffold_130 . CDS 66857 67957 . + 0 ID=Phyra84916;Parent=Phyra84916;rank=2 scaffold_130 . CDS 68025 68321 . + 0 ID=Phyra84916;Parent=Phyra84916;rank=3 scaffold_130 . biological_region 68450 68455 0.999 - . logic_name=eponine scaffold_130 . biological_region 69020 69023 0.999 + . logic_name=eponine scaffold_130 . repeat_region 73606 73618 . ? . description=dust scaffold_130 . biological_region 75223 75226 0.999 - . logic_name=eponine scaffold_130 . exon 66857 67957 . + . ID=Phyra84916.2;Parent=Phyra84916;constitutive=1;rank=2 scaffold_130 . exon 68025 68321 . + . ID=Phyra84916.3;Parent=Phyra84916;constitutive=1;rank=3 scaffold_130 ensembl protein_coding_gene 68631 71544 . - . ID=Phyra84917;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000018;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 68631 71544 . - . ID=Phyra84917;Parent=Phyra84917;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 68631 69733 . - 0 ID=Phyra84917;Parent=Phyra84917;rank=2 scaffold_130 . exon 68631 69733 . - . ID=Phyra84917.2;Parent=Phyra84917;constitutive=1;ensembl_phase=1;rank=2 scaffold_130 . CDS 69909 71544 . - 0 ID=Phyra84917;Parent=Phyra84917;rank=1 scaffold_130 . exon 69909 71544 . - . ID=Phyra84917.1;Parent=Phyra84917;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_130 ensembl protein_coding_gene 71719 72931 . - . ID=Phyra84918;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000019;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 71719 72931 . - . ID=Phyra84918;Parent=Phyra84918;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 71719 71811 . - 0 ID=Phyra84918;Parent=Phyra84918;rank=8 scaffold_130 . exon 71719 71811 . - . ID=Phyra84918.8;Parent=Phyra84918;constitutive=1;rank=8 scaffold_130 . CDS 71879 71966 . - 0 ID=Phyra84918;Parent=Phyra84918;rank=7 scaffold_130 . exon 71879 71966 . - . ID=Phyra84918.7;Parent=Phyra84918;constitutive=1;ensembl_phase=2;rank=7 scaffold_130 . CDS 72050 72099 . - 0 ID=Phyra84918;Parent=Phyra84918;rank=6 scaffold_130 . exon 72050 72099 . - . ID=Phyra84918.6;Parent=Phyra84918;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_130 . CDS 72160 72204 . - 0 ID=Phyra84918;Parent=Phyra84918;rank=5 scaffold_130 . exon 72160 72204 . - . ID=Phyra84918.5;Parent=Phyra84918;constitutive=1;rank=5 scaffold_130 . CDS 72278 72366 . - 0 ID=Phyra84918;Parent=Phyra84918;rank=4 scaffold_130 . exon 72278 72366 . - . ID=Phyra84918.4;Parent=Phyra84918;constitutive=1;ensembl_phase=1;rank=4 scaffold_130 . CDS 72434 72499 . - 0 ID=Phyra84918;Parent=Phyra84918;rank=3 scaffold_130 . exon 72434 72499 . - . ID=Phyra84918.3;Parent=Phyra84918;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_130 . CDS 72579 72669 . - 0 ID=Phyra84918;Parent=Phyra84918;rank=2 scaffold_130 . exon 72579 72669 . - . ID=Phyra84918.2;Parent=Phyra84918;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_130 . CDS 72731 72931 . - 0 ID=Phyra84918;Parent=Phyra84918;rank=1 scaffold_130 . exon 72731 72931 . - . ID=Phyra84918.1;Parent=Phyra84918;constitutive=1;rank=1 scaffold_130 ensembl protein_coding_gene 73013 74716 . - . ID=Phyra84919;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000020;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 73013 74716 . - . ID=Phyra84919;Parent=Phyra84919;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 73013 73184 . - 0 ID=Phyra84919;Parent=Phyra84919;rank=7 scaffold_130 . exon 73013 73184 . - . ID=Phyra84919.7;Parent=Phyra84919;constitutive=1;ensembl_phase=2;rank=7 scaffold_130 . CDS 73250 73352 . - 0 ID=Phyra84919;Parent=Phyra84919;rank=6 scaffold_130 . exon 73250 73352 . - . ID=Phyra84919.6;Parent=Phyra84919;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_130 . CDS 73423 73555 . - 0 ID=Phyra84919;Parent=Phyra84919;rank=5 scaffold_130 . exon 73423 73555 . - . ID=Phyra84919.5;Parent=Phyra84919;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_130 . CDS 73633 73807 . - 0 ID=Phyra84919;Parent=Phyra84919;rank=4 scaffold_130 . exon 73633 73807 . - . ID=Phyra84919.4;Parent=Phyra84919;constitutive=1;ensembl_phase=2;rank=4 scaffold_130 . CDS 73870 73940 . - 0 ID=Phyra84919;Parent=Phyra84919;rank=3 scaffold_130 . exon 73870 73940 . - . ID=Phyra84919.3;Parent=Phyra84919;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_130 . CDS 74002 74278 . - 0 ID=Phyra84919;Parent=Phyra84919;rank=2 scaffold_130 . exon 74002 74278 . - . ID=Phyra84919.2;Parent=Phyra84919;constitutive=1;ensembl_phase=2;rank=2 scaffold_130 . CDS 74352 74716 . - 0 ID=Phyra84919;Parent=Phyra84919;rank=1 scaffold_130 . exon 74352 74716 . - . ID=Phyra84919.1;Parent=Phyra84919;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_130 . biological_region 85584 85586 0.999 + . logic_name=eponine scaffold_130 . biological_region 86545 86549 0.999 - . logic_name=eponine scaffold_130 . biological_region 88649 88653 0.999 + . logic_name=eponine scaffold_130 . biological_region 89862 89863 0.999 - . logic_name=eponine scaffold_130 . repeat_region 90521 90570 . ? . description=dust scaffold_130 . repeat_region 92133 92828 . ? . description=dust scaffold_130 . biological_region 94115 94119 0.999 + . logic_name=eponine scaffold_130 ensembl protein_coding_gene 93465 94346 . + . ID=Phyra72284;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_130000002;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 93465 94346 . + . ID=Phyra72284;Parent=Phyra72284;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 93465 94346 . + 0 ID=Phyra72284;Parent=Phyra72284;rank=1 scaffold_130 . exon 93465 94346 . + . ID=Phyra72284.1;Parent=Phyra72284;constitutive=1;rank=1 scaffold_130 ensembl protein_coding_gene 85584 86852 . + . ID=Phyra84920;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000021;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 85584 86852 . + . ID=Phyra84920;Parent=Phyra84920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 85584 86852 . + 0 ID=Phyra84920;Parent=Phyra84920;rank=1 scaffold_130 . exon 85584 86852 . + . ID=Phyra84920.1;Parent=Phyra84920;constitutive=1;rank=1 scaffold_130 ensembl protein_coding_gene 87975 91908 . + . ID=Phyra84921;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_130000022;logic_name=jgi_phyra1 scaffold_130 ensembl transcript 87975 91908 . + . ID=Phyra84921;Parent=Phyra84921;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_130 . CDS 87975 89269 . + 0 ID=Phyra84921;Parent=Phyra84921;rank=1 scaffold_130 . exon 87975 89269 . + . ID=Phyra84921.1;Parent=Phyra84921;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_130 . CDS 89758 90442 . + 0 ID=Phyra84921;Parent=Phyra84921;rank=2 scaffold_130 . exon 89758 90442 . + . ID=Phyra84921.2;Parent=Phyra84921;constitutive=1;ensembl_phase=2;rank=2 scaffold_130 . CDS 90679 90787 . + 0 ID=Phyra84921;Parent=Phyra84921;rank=3 scaffold_130 . exon 90679 90787 . + . ID=Phyra84921.3;Parent=Phyra84921;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_130 . CDS 90855 91044 . + 0 ID=Phyra84921;Parent=Phyra84921;rank=4 scaffold_130 . exon 90855 91044 . + . ID=Phyra84921.4;Parent=Phyra84921;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_130 . CDS 91122 91177 . + 0 ID=Phyra84921;Parent=Phyra84921;rank=5 scaffold_130 . exon 91122 91177 . + . ID=Phyra84921.5;Parent=Phyra84921;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_130 . CDS 91292 91626 . + 0 ID=Phyra84921;Parent=Phyra84921;rank=6 scaffold_130 . exon 91292 91626 . + . ID=Phyra84921.6;Parent=Phyra84921;constitutive=1;ensembl_phase=1;rank=6 scaffold_130 . CDS 91699 91908 . + 0 ID=Phyra84921;Parent=Phyra84921;rank=7 scaffold_130 . exon 91699 91908 . + . ID=Phyra84921.7;Parent=Phyra84921;constitutive=1;rank=7 ##gff-version 3 ##sequence-region scaffold_132 1 96342 scaffold_132 . repeat_region 6 82 . - . description=GypsyPi-1c_I-int scaffold_132 . biological_region 616 616 0.999 - . logic_name=eponine scaffold_132 . biological_region 725 728 0.999 - . logic_name=eponine scaffold_132 . repeat_region 2143 2192 . ? . description=dust scaffold_132 . biological_region 2568 2570 0.999 + . logic_name=eponine scaffold_132 . biological_region 2989 2995 0.999 - . logic_name=eponine scaffold_132 . biological_region 3175 3178 0.999 - . logic_name=eponine scaffold_132 . repeat_region 4045 4094 . ? . description=dust scaffold_132 . repeat_region 4132 5331 . - . description=GypsyPi-1c_I-int scaffold_132 . repeat_region 5347 12201 . ? . description=dust scaffold_132 ensembl protein_coding_gene 13 1451 . - . ID=Phyra84949;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000001;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 13 1451 . - . ID=Phyra84949;Parent=Phyra84949;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 13 765 . - 0 ID=Phyra84949;Parent=Phyra84949;rank=3 scaffold_132 . exon 13 765 . - . ID=Phyra84949.3;Parent=Phyra84949;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_132 . CDS 986 1298 . - 0 ID=Phyra84949;Parent=Phyra84949;rank=2 scaffold_132 . exon 986 1298 . - . ID=Phyra84949.2;Parent=Phyra84949;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_132 . CDS 1374 1451 . - 0 ID=Phyra84949;Parent=Phyra84949;rank=1 scaffold_132 . exon 1374 1451 . - . ID=Phyra84949.1;Parent=Phyra84949;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 2515 3736 . + . ID=Phyra84950;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000002;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 2515 3736 . + . ID=Phyra84950;Parent=Phyra84950;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 2515 2668 . + 0 ID=Phyra84950;Parent=Phyra84950;rank=1 scaffold_132 . exon 2515 2668 . + . ID=Phyra84950.1;Parent=Phyra84950;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_132 . CDS 2735 3394 . + 0 ID=Phyra84950;Parent=Phyra84950;rank=2 scaffold_132 . exon 2735 3394 . + . ID=Phyra84950.2;Parent=Phyra84950;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_132 . CDS 3449 3466 . + 0 ID=Phyra84950;Parent=Phyra84950;rank=3 scaffold_132 . exon 3449 3466 . + . ID=Phyra84950.3;Parent=Phyra84950;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_132 . CDS 3491 3534 . + 0 ID=Phyra84950;Parent=Phyra84950;rank=4 scaffold_132 . exon 3491 3534 . + . ID=Phyra84950.4;Parent=Phyra84950;constitutive=1;ensembl_phase=1;rank=4 scaffold_132 . CDS 3629 3736 . + 0 ID=Phyra84950;Parent=Phyra84950;rank=5 scaffold_132 . exon 3629 3736 . + . ID=Phyra84950.5;Parent=Phyra84950;constitutive=1;rank=5 scaffold_132 ensembl protein_coding_gene 14251 17362 . + . ID=Phyra84951;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000003;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 14251 17362 . + . ID=Phyra84951;Parent=Phyra84951;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 14251 14754 . + 0 ID=Phyra84951;Parent=Phyra84951;rank=1 scaffold_132 . exon 14251 14754 . + . ID=Phyra84951.1;Parent=Phyra84951;constitutive=1;rank=1 scaffold_132 . CDS 14877 15020 . + 0 ID=Phyra84951;Parent=Phyra84951;rank=2 scaffold_132 . exon 14877 15020 . + . ID=Phyra84951.2;Parent=Phyra84951;constitutive=1;rank=2 scaffold_132 . CDS 15096 15408 . + 0 ID=Phyra84951;Parent=Phyra84951;rank=3 scaffold_132 . exon 15096 15408 . + . ID=Phyra84951.3;Parent=Phyra84951;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_132 . CDS 15629 16992 . + 0 ID=Phyra84951;Parent=Phyra84951;rank=4 scaffold_132 . exon 15629 16992 . + . ID=Phyra84951.4;Parent=Phyra84951;constitutive=1;ensembl_phase=1;rank=4 scaffold_132 . CDS 17056 17265 . + 0 ID=Phyra84951;Parent=Phyra84951;rank=5 scaffold_132 . exon 17056 17265 . + . ID=Phyra84951.5;Parent=Phyra84951;constitutive=1;rank=5 scaffold_132 . CDS 17324 17362 . + 0 ID=Phyra84951;Parent=Phyra84951;rank=6 scaffold_132 . exon 17324 17362 . + . ID=Phyra84951.6;Parent=Phyra84951;constitutive=1;rank=6 scaffold_132 . repeat_region 19318 19367 . ? . description=dust scaffold_132 . biological_region 19446 19449 0.999 + . logic_name=eponine scaffold_132 . biological_region 19629 19635 0.999 + . logic_name=eponine scaffold_132 . repeat_region 23789 23801 . ? . description=dust scaffold_132 . repeat_region 24230 24237 . ? . description=dust scaffold_132 . biological_region 25630 25633 0.999 - . logic_name=eponine scaffold_132 . biological_region 27035 27038 0.999 - . logic_name=eponine scaffold_132 . repeat_region 27856 27875 . ? . description=dust scaffold_132 . biological_region 28722 28723 0.999 - . logic_name=eponine scaffold_132 ensembl protein_coding_gene 20795 22382 . - . ID=Phyra84952;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000004;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 20795 22382 . - . ID=Phyra84952;Parent=Phyra84952;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 20795 20978 . - 0 ID=Phyra84952;Parent=Phyra84952;rank=5 scaffold_132 . exon 20795 20978 . - . ID=Phyra84952.5;Parent=Phyra84952;constitutive=1;ensembl_phase=2;rank=5 scaffold_132 . CDS 21044 21176 . - 0 ID=Phyra84952;Parent=Phyra84952;rank=4 scaffold_132 . exon 21044 21176 . - . ID=Phyra84952.4;Parent=Phyra84952;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_132 . CDS 21292 21514 . - 0 ID=Phyra84952;Parent=Phyra84952;rank=3 scaffold_132 . exon 21292 21514 . - . ID=Phyra84952.3;Parent=Phyra84952;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_132 . CDS 21556 21977 . - 0 ID=Phyra84952;Parent=Phyra84952;rank=2 scaffold_132 . exon 21556 21977 . - . ID=Phyra84952.2;Parent=Phyra84952;constitutive=1;ensembl_phase=1;rank=2 scaffold_132 . CDS 22040 22382 . - 0 ID=Phyra84952;Parent=Phyra84952;rank=1 scaffold_132 . exon 22040 22382 . - . ID=Phyra84952.1;Parent=Phyra84952;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_132 ensembl protein_coding_gene 24342 27252 . + . ID=Phyra84953;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000005;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 24342 27252 . + . ID=Phyra84953;Parent=Phyra84953;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 24342 24663 . + 0 ID=Phyra84953;Parent=Phyra84953;rank=1 scaffold_132 . exon 24342 24663 . + . ID=Phyra84953.1;Parent=Phyra84953;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_132 . CDS 24985 25193 . + 0 ID=Phyra84953;Parent=Phyra84953;rank=2 scaffold_132 . exon 24985 25193 . + . ID=Phyra84953.2;Parent=Phyra84953;constitutive=1;ensembl_phase=1;rank=2 scaffold_132 . CDS 25296 25359 . + 0 ID=Phyra84953;Parent=Phyra84953;rank=3 scaffold_132 . exon 25296 25359 . + . ID=Phyra84953.3;Parent=Phyra84953;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_132 . CDS 25416 25648 . + 0 ID=Phyra84953;Parent=Phyra84953;rank=4 scaffold_132 . exon 25416 25648 . + . ID=Phyra84953.4;Parent=Phyra84953;constitutive=1;ensembl_phase=1;rank=4 scaffold_132 . CDS 26076 26263 . + 0 ID=Phyra84953;Parent=Phyra84953;rank=5 scaffold_132 . exon 26076 26263 . + . ID=Phyra84953.5;Parent=Phyra84953;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_132 . CDS 26333 26342 . + 0 ID=Phyra84953;Parent=Phyra84953;rank=6 scaffold_132 . exon 26333 26342 . + . ID=Phyra84953.6;Parent=Phyra84953;constitutive=1;ensembl_phase=2;rank=6 scaffold_132 . CDS 26431 26637 . + 0 ID=Phyra84953;Parent=Phyra84953;rank=7 scaffold_132 . exon 26431 26637 . + . ID=Phyra84953.7;Parent=Phyra84953;constitutive=1;rank=7 scaffold_132 . CDS 26694 26831 . + 0 ID=Phyra84953;Parent=Phyra84953;rank=8 scaffold_132 . exon 26694 26831 . + . ID=Phyra84953.8;Parent=Phyra84953;constitutive=1;rank=8 scaffold_132 . CDS 26887 27252 . + 0 ID=Phyra84953;Parent=Phyra84953;rank=9 scaffold_132 . exon 26887 27252 . + . ID=Phyra84953.9;Parent=Phyra84953;constitutive=1;rank=9 scaffold_132 ensembl protein_coding_gene 27986 29397 . - . ID=Phyra84954;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000006;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 27986 29397 . - . ID=Phyra84954;Parent=Phyra84954;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 27986 29155 . - 0 ID=Phyra84954;Parent=Phyra84954;rank=2 scaffold_132 . exon 27986 29155 . - . ID=Phyra84954.2;Parent=Phyra84954;constitutive=1;rank=2 scaffold_132 . CDS 29230 29397 . - 0 ID=Phyra84954;Parent=Phyra84954;rank=1 scaffold_132 . exon 29230 29397 . - . ID=Phyra84954.1;Parent=Phyra84954;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 31384 34367 . + . ID=Phyra84955;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000007;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 31384 34367 . + . ID=Phyra84955;Parent=Phyra84955;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 31384 31646 . + 0 ID=Phyra84955;Parent=Phyra84955;rank=1 scaffold_132 . exon 31384 31646 . + . ID=Phyra84955.1;Parent=Phyra84955;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_132 . CDS 31742 34367 . + 0 ID=Phyra84955;Parent=Phyra84955;rank=2 scaffold_132 . exon 31742 34367 . + . ID=Phyra84955.2;Parent=Phyra84955;constitutive=1;ensembl_phase=2;rank=2 scaffold_132 . biological_region 42061 42065 0.999 - . logic_name=eponine scaffold_132 . biological_region 46968 46971 0.999 - . logic_name=eponine scaffold_132 ensembl protein_coding_gene 47102 48967 . + . ID=Phyra72289;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_132000001;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 47102 48967 . + . ID=Phyra72289;Parent=Phyra72289;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 47102 48967 . + 0 ID=Phyra72289;Parent=Phyra72289;rank=1 scaffold_132 . exon 47102 48967 . + . ID=Phyra72289.1;Parent=Phyra72289;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 41741 42820 . + . ID=Phyra84956;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000008;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 41741 42820 . + . ID=Phyra84956;Parent=Phyra84956;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 41741 42139 . + 0 ID=Phyra84956;Parent=Phyra84956;rank=1 scaffold_132 . exon 41741 42139 . + . ID=Phyra84956.1;Parent=Phyra84956;constitutive=1;rank=1 scaffold_132 . CDS 42233 42820 . + 0 ID=Phyra84956;Parent=Phyra84956;rank=2 scaffold_132 . exon 42233 42820 . + . ID=Phyra84956.2;Parent=Phyra84956;constitutive=1;rank=2 scaffold_132 ensembl protein_coding_gene 43281 44254 . - . ID=Phyra84957;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000009;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 43281 44254 . - . ID=Phyra84957;Parent=Phyra84957;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 43281 43817 . - 0 ID=Phyra84957;Parent=Phyra84957;rank=2 scaffold_132 . exon 43281 43817 . - . ID=Phyra84957.2;Parent=Phyra84957;constitutive=1;rank=2 scaffold_132 . CDS 43892 44254 . - 0 ID=Phyra84957;Parent=Phyra84957;rank=1 scaffold_132 . exon 43892 44254 . - . ID=Phyra84957.1;Parent=Phyra84957;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 45939 46754 . + . ID=Phyra84958;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000010;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 45939 46754 . + . ID=Phyra84958;Parent=Phyra84958;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 45939 46754 . + 0 ID=Phyra84958;Parent=Phyra84958;rank=1 scaffold_132 . exon 45939 46754 . + . ID=Phyra84958.1;Parent=Phyra84958;constitutive=1;rank=1 scaffold_132 . repeat_region 48931 48951 . ? . description=trf scaffold_132 . repeat_region 48931 48951 . ? . description=dust scaffold_132 . repeat_region 49207 49267 . ? . description=dust scaffold_132 . repeat_region 49437 49477 . ? . description=dust scaffold_132 . repeat_region 49444 49480 . ? . description=trf scaffold_132 . repeat_region 50539 50592 . ? . description=trf scaffold_132 . repeat_region 50540 50598 . ? . description=trf scaffold_132 . repeat_region 50543 50595 . ? . description=trf scaffold_132 . repeat_region 50554 50598 . ? . description=dust scaffold_132 . repeat_region 55822 55864 . ? . description=trf scaffold_132 ensembl protein_coding_gene 50770 51567 . - . ID=Phyra84961;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000013;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 50770 51567 . - . ID=Phyra84961;Parent=Phyra84961;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 50770 51567 . - 0 ID=Phyra84961;Parent=Phyra84961;rank=1 scaffold_132 . exon 50770 51567 . - . ID=Phyra84961.1;Parent=Phyra84961;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 51675 52891 . + . ID=Phyra84962;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000014;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 51675 52891 . + . ID=Phyra84962;Parent=Phyra84962;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 51675 51894 . + 0 ID=Phyra84962;Parent=Phyra84962;rank=1 scaffold_132 . exon 51675 51894 . + . ID=Phyra84962.1;Parent=Phyra84962;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_132 . CDS 51955 52070 . + 0 ID=Phyra84962;Parent=Phyra84962;rank=2 scaffold_132 . exon 51955 52070 . + . ID=Phyra84962.2;Parent=Phyra84962;constitutive=1;ensembl_phase=1;rank=2 scaffold_132 . CDS 52137 52190 . + 0 ID=Phyra84962;Parent=Phyra84962;rank=3 scaffold_132 . exon 52137 52190 . + . ID=Phyra84962.3;Parent=Phyra84962;constitutive=1;rank=3 scaffold_132 . CDS 52263 52311 . + 0 ID=Phyra84962;Parent=Phyra84962;rank=4 scaffold_132 . exon 52263 52311 . + . ID=Phyra84962.4;Parent=Phyra84962;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_132 . CDS 52377 52891 . + 0 ID=Phyra84962;Parent=Phyra84962;rank=5 scaffold_132 . exon 52377 52891 . + . ID=Phyra84962.5;Parent=Phyra84962;constitutive=1;ensembl_phase=1;rank=5 scaffold_132 ensembl protein_coding_gene 56188 57171 . + . ID=Phyra84963;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000015;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 56188 57171 . + . ID=Phyra84963;Parent=Phyra84963;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 56188 57171 . + 0 ID=Phyra84963;Parent=Phyra84963;rank=1 scaffold_132 . exon 56188 57171 . + . ID=Phyra84963.1;Parent=Phyra84963;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 49092 50662 . + . ID=Phyra97006;biotype=protein_coding;external_name=C_scaffold_132000004;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 49092 50662 . + . ID=Phyra97006;Parent=Phyra97006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 49092 49352 . + 0 ID=Phyra97006;Parent=Phyra97006;rank=1 scaffold_132 . exon 49092 49352 . + . ID=Phyra97006.1;Parent=Phyra97006;constitutive=1;rank=1 scaffold_132 . CDS 49416 49715 . + 0 ID=Phyra97006;Parent=Phyra97006;rank=2 scaffold_132 . exon 49416 49715 . + . ID=Phyra97006.2;Parent=Phyra97006;constitutive=1;rank=2 scaffold_132 . CDS 49785 49912 . + 0 ID=Phyra97006;Parent=Phyra97006;rank=3 scaffold_132 . exon 49785 49912 . + . ID=Phyra97006.3;Parent=Phyra97006;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_132 . CDS 50215 50662 . + 0 ID=Phyra97006;Parent=Phyra97006;rank=4 scaffold_132 . exon 50215 50662 . + . ID=Phyra97006.4;Parent=Phyra97006;constitutive=1;ensembl_phase=2;rank=4 scaffold_132 . biological_region 62521 62523 0.999 - . logic_name=eponine scaffold_132 ensembl protein_coding_gene 64565 65377 . + . ID=Phyra41237;biotype=protein_coding;external_name=gwEuk.132.17.1;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 64565 65377 . + . ID=Phyra41237;Parent=Phyra41237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 64565 64635 . + 0 ID=Phyra41237;Parent=Phyra41237;rank=1 scaffold_132 . exon 64565 64635 . + . ID=Phyra41237.1;Parent=Phyra41237;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_132 . CDS 64713 64781 . + 0 ID=Phyra41237;Parent=Phyra41237;rank=2 scaffold_132 . exon 64713 64781 . + . ID=Phyra41237.2;Parent=Phyra41237;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_132 . CDS 64859 65007 . + 0 ID=Phyra41237;Parent=Phyra41237;rank=3 scaffold_132 . exon 64859 65007 . + . ID=Phyra41237.3;Parent=Phyra41237;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_132 . CDS 65085 65377 . + 0 ID=Phyra41237;Parent=Phyra41237;rank=4 scaffold_132 . exon 65085 65377 . + . ID=Phyra41237.4;Parent=Phyra41237;constitutive=1;ensembl_phase=1;rank=4 scaffold_132 ensembl protein_coding_gene 57836 58810 . + . ID=Phyra84964;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000016;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 57836 58810 . + . ID=Phyra84964;Parent=Phyra84964;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 57836 58810 . + 0 ID=Phyra84964;Parent=Phyra84964;rank=1 scaffold_132 . exon 57836 58810 . + . ID=Phyra84964.1;Parent=Phyra84964;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 59377 60149 . - . ID=Phyra84965;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000017;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 59377 60149 . - . ID=Phyra84965;Parent=Phyra84965;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 59377 59418 . - 0 ID=Phyra84965;Parent=Phyra84965;rank=4 scaffold_132 . exon 59377 59418 . - . ID=Phyra84965.4;Parent=Phyra84965;constitutive=1;rank=4 scaffold_132 . CDS 59490 59613 . - 0 ID=Phyra84965;Parent=Phyra84965;rank=3 scaffold_132 . exon 59490 59613 . - . ID=Phyra84965.3;Parent=Phyra84965;constitutive=1;ensembl_phase=2;rank=3 scaffold_132 . CDS 59691 59925 . - 0 ID=Phyra84965;Parent=Phyra84965;rank=2 scaffold_132 . exon 59691 59925 . - . ID=Phyra84965.2;Parent=Phyra84965;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_132 . CDS 59987 60149 . - 0 ID=Phyra84965;Parent=Phyra84965;rank=1 scaffold_132 . exon 59987 60149 . - . ID=Phyra84965.1;Parent=Phyra84965;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_132 ensembl protein_coding_gene 62317 63246 . + . ID=Phyra84967;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000019;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 62317 63246 . + . ID=Phyra84967;Parent=Phyra84967;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 62317 62990 . + 0 ID=Phyra84967;Parent=Phyra84967;rank=1 scaffold_132 . exon 62317 62990 . + . ID=Phyra84967.1;Parent=Phyra84967;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_132 . CDS 63060 63246 . + 0 ID=Phyra84967;Parent=Phyra84967;rank=2 scaffold_132 . exon 63060 63246 . + . ID=Phyra84967.2;Parent=Phyra84967;constitutive=1;ensembl_phase=2;rank=2 scaffold_132 ensembl protein_coding_gene 63410 64356 . - . ID=Phyra84968;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000020;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 63410 64356 . - . ID=Phyra84968;Parent=Phyra84968;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 63410 63652 . - 0 ID=Phyra84968;Parent=Phyra84968;rank=2 scaffold_132 . exon 63410 63652 . - . ID=Phyra84968.2;Parent=Phyra84968;constitutive=1;rank=2 scaffold_132 . CDS 63715 64356 . - 0 ID=Phyra84968;Parent=Phyra84968;rank=1 scaffold_132 . exon 63715 64356 . - . ID=Phyra84968.1;Parent=Phyra84968;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 60343 60737 . + . ID=Phyra97010;biotype=protein_coding;external_name=C_scaffold_132000008;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 60343 60737 . + . ID=Phyra97010;Parent=Phyra97010;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 60343 60364 . + 0 ID=Phyra97010;Parent=Phyra97010;rank=1 scaffold_132 . exon 60343 60364 . + . ID=Phyra97010.1;Parent=Phyra97010;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_132 . CDS 60526 60737 . + 0 ID=Phyra97010;Parent=Phyra97010;rank=2 scaffold_132 . exon 60526 60737 . + . ID=Phyra97010.2;Parent=Phyra97010;constitutive=1;ensembl_phase=1;rank=2 scaffold_132 ensembl protein_coding_gene 61055 62162 . - . ID=Phyra97011;biotype=protein_coding;external_name=C_scaffold_132000009;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 61055 62162 . - . ID=Phyra97011;Parent=Phyra97011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 61055 61733 . - 0 ID=Phyra97011;Parent=Phyra97011;rank=3 scaffold_132 . exon 61055 61733 . - . ID=Phyra97011.3;Parent=Phyra97011;constitutive=1;ensembl_phase=2;rank=3 scaffold_132 . CDS 61825 61901 . - 0 ID=Phyra97011;Parent=Phyra97011;rank=2 scaffold_132 . exon 61825 61901 . - . ID=Phyra97011.2;Parent=Phyra97011;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_132 . CDS 62010 62162 . - 0 ID=Phyra97011;Parent=Phyra97011;rank=1 scaffold_132 . exon 62010 62162 . - . ID=Phyra97011.1;Parent=Phyra97011;constitutive=1;rank=1 scaffold_132 . repeat_region 73969 73979 . ? . description=dust scaffold_132 ensembl protein_coding_gene 69239 70173 . - . ID=Phyra84970;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000022;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 69239 70173 . - . ID=Phyra84970;Parent=Phyra84970;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 69239 69352 . - 0 ID=Phyra84970;Parent=Phyra84970;rank=4 scaffold_132 . exon 69239 69352 . - . ID=Phyra84970.4;Parent=Phyra84970;constitutive=1;rank=4 scaffold_132 . CDS 69421 69564 . - 0 ID=Phyra84970;Parent=Phyra84970;rank=3 scaffold_132 . exon 69421 69564 . - . ID=Phyra84970.3;Parent=Phyra84970;constitutive=1;rank=3 scaffold_132 . CDS 69636 69987 . - 0 ID=Phyra84970;Parent=Phyra84970;rank=2 scaffold_132 . exon 69636 69987 . - . ID=Phyra84970.2;Parent=Phyra84970;constitutive=1;ensembl_phase=2;rank=2 scaffold_132 . CDS 70106 70173 . - 0 ID=Phyra84970;Parent=Phyra84970;rank=1 scaffold_132 . exon 70106 70173 . - . ID=Phyra84970.1;Parent=Phyra84970;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_132 ensembl protein_coding_gene 72142 73470 . - . ID=Phyra84971;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000023;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 72142 73470 . - . ID=Phyra84971;Parent=Phyra84971;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 72142 73470 . - 0 ID=Phyra84971;Parent=Phyra84971;rank=1 scaffold_132 . exon 72142 73470 . - . ID=Phyra84971.1;Parent=Phyra84971;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 75088 78170 . - . ID=Phyra97016;biotype=protein_coding;external_name=C_scaffold_132000014;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 75088 78170 . - . ID=Phyra97016;Parent=Phyra97016;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 75088 75611 . - 0 ID=Phyra97016;Parent=Phyra97016;rank=10 scaffold_132 . exon 75088 75611 . - . ID=Phyra97016.10;Parent=Phyra97016;constitutive=1;ensembl_phase=1;rank=10 scaffold_132 . CDS 75715 75896 . - 0 ID=Phyra97016;Parent=Phyra97016;rank=9 scaffold_132 . exon 75715 75896 . - . ID=Phyra97016.9;Parent=Phyra97016;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_132 . CDS 75930 76075 . - 0 ID=Phyra97016;Parent=Phyra97016;rank=8 scaffold_132 . exon 75930 76075 . - . ID=Phyra97016.8;Parent=Phyra97016;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_132 . CDS 76115 76307 . - 0 ID=Phyra97016;Parent=Phyra97016;rank=7 scaffold_132 . exon 76115 76307 . - . ID=Phyra97016.7;Parent=Phyra97016;constitutive=1;ensembl_phase=2;rank=7 scaffold_132 . CDS 76368 76684 . - 0 ID=Phyra97016;Parent=Phyra97016;rank=6 scaffold_132 . exon 76368 76684 . - . ID=Phyra97016.6;Parent=Phyra97016;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_132 . CDS 76766 77092 . - 0 ID=Phyra97016;Parent=Phyra97016;rank=5 scaffold_132 . exon 76766 77092 . - . ID=Phyra97016.5;Parent=Phyra97016;constitutive=1;rank=5 scaffold_132 . CDS 77432 77617 . - 0 ID=Phyra97016;Parent=Phyra97016;rank=4 scaffold_132 . CDS 77688 77795 . - 0 ID=Phyra97016;Parent=Phyra97016;rank=3 scaffold_132 . CDS 77865 77935 . - 0 ID=Phyra97016;Parent=Phyra97016;rank=2 scaffold_132 . CDS 78098 78170 . - 0 ID=Phyra97016;Parent=Phyra97016;rank=1 scaffold_132 . biological_region 83538 83542 0.999 + . logic_name=eponine scaffold_132 . biological_region 83888 83888 0.999 - . logic_name=eponine scaffold_132 . biological_region 86004 86008 0.999 + . logic_name=eponine scaffold_132 . biological_region 86073 86078 0.999 + . logic_name=eponine scaffold_132 ensembl protein_coding_gene 86110 86472 . - . ID=Phyra72291;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_132000003;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 86110 86472 . - . ID=Phyra72291;Parent=Phyra72291;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 86110 86472 . - 0 ID=Phyra72291;Parent=Phyra72291;rank=1 scaffold_132 . exon 86110 86472 . - . ID=Phyra72291.1;Parent=Phyra72291;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 80662 84102 . - . ID=Phyra84973;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000025;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 80662 84102 . - . ID=Phyra84973;Parent=Phyra84973;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 80662 84102 . - 0 ID=Phyra84973;Parent=Phyra84973;rank=1 scaffold_132 . exon 80662 84102 . - . ID=Phyra84973.1;Parent=Phyra84973;constitutive=1;rank=1 scaffold_132 . exon 77432 77617 . - . ID=Phyra97016.4;Parent=Phyra97016;constitutive=1;rank=4 scaffold_132 . exon 77688 77795 . - . ID=Phyra97016.3;Parent=Phyra97016;constitutive=1;rank=3 scaffold_132 . exon 77865 77935 . - . ID=Phyra97016.2;Parent=Phyra97016;constitutive=1;ensembl_phase=1;rank=2 scaffold_132 . exon 78098 78170 . - . ID=Phyra97016.1;Parent=Phyra97016;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_132 . repeat_region 93255 93304 . ? . description=dust scaffold_132 . repeat_region 94153 94559 . ? . description=dust scaffold_132 ensembl protein_coding_gene 86847 88459 . + . ID=Phyra84975;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000027;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 86847 88459 . + . ID=Phyra84975;Parent=Phyra84975;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 86847 87095 . + 0 ID=Phyra84975;Parent=Phyra84975;rank=1 scaffold_132 . exon 86847 87095 . + . ID=Phyra84975.1;Parent=Phyra84975;constitutive=1;rank=1 scaffold_132 . CDS 87158 87501 . + 0 ID=Phyra84975;Parent=Phyra84975;rank=2 scaffold_132 . exon 87158 87501 . + . ID=Phyra84975.2;Parent=Phyra84975;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_132 . CDS 87578 87721 . + 0 ID=Phyra84975;Parent=Phyra84975;rank=3 scaffold_132 . exon 87578 87721 . + . ID=Phyra84975.3;Parent=Phyra84975;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_132 . CDS 87802 88459 . + 0 ID=Phyra84975;Parent=Phyra84975;rank=4 scaffold_132 . exon 87802 88459 . + . ID=Phyra84975.4;Parent=Phyra84975;constitutive=1;ensembl_phase=2;rank=4 scaffold_132 ensembl protein_coding_gene 88799 90471 . + . ID=Phyra84976;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000028;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 88799 90471 . + . ID=Phyra84976;Parent=Phyra84976;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 88799 88834 . + 0 ID=Phyra84976;Parent=Phyra84976;rank=1 scaffold_132 . exon 88799 88834 . + . ID=Phyra84976.1;Parent=Phyra84976;constitutive=1;rank=1 scaffold_132 . CDS 88904 90162 . + 0 ID=Phyra84976;Parent=Phyra84976;rank=2 scaffold_132 . exon 88904 90162 . + . ID=Phyra84976.2;Parent=Phyra84976;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_132 . CDS 90243 90471 . + 0 ID=Phyra84976;Parent=Phyra84976;rank=3 scaffold_132 . exon 90243 90471 . + . ID=Phyra84976.3;Parent=Phyra84976;constitutive=1;ensembl_phase=2;rank=3 scaffold_132 ensembl protein_coding_gene 91383 93579 . - . ID=Phyra84977;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000029;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 91383 93579 . - . ID=Phyra84977;Parent=Phyra84977;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 91383 93249 . - 0 ID=Phyra84977;Parent=Phyra84977;rank=2 scaffold_132 . exon 91383 93249 . - . ID=Phyra84977.2;Parent=Phyra84977;constitutive=1;ensembl_phase=2;rank=2 scaffold_132 . CDS 93575 93579 . - 0 ID=Phyra84977;Parent=Phyra84977;rank=1 scaffold_132 . exon 93575 93579 . - . ID=Phyra84977.1;Parent=Phyra84977;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_132 ensembl protein_coding_gene 94676 96289 . + . ID=Phyra84978;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_132000030;logic_name=jgi_phyra1 scaffold_132 ensembl transcript 94676 96289 . + . ID=Phyra84978;Parent=Phyra84978;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_132 . CDS 94676 96289 . + 0 ID=Phyra84978;Parent=Phyra84978;rank=1 scaffold_132 . exon 94676 96289 . + . ID=Phyra84978.1;Parent=Phyra84978;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_133 1 97268 scaffold_133 . biological_region 393 395 0.999 + . logic_name=eponine scaffold_133 . biological_region 5122 5123 0.999 - . logic_name=eponine scaffold_133 . biological_region 8415 8420 0.999 + . logic_name=eponine scaffold_133 . biological_region 8448 8449 0.999 + . logic_name=eponine scaffold_133 . biological_region 8489 8492 0.999 - . logic_name=eponine scaffold_133 . biological_region 9005 9006 0.999 - . logic_name=eponine scaffold_133 . biological_region 9367 9371 0.999 + . logic_name=eponine scaffold_133 . biological_region 9459 9461 0.999 + . logic_name=eponine scaffold_133 . biological_region 9560 9562 0.999 + . logic_name=eponine scaffold_133 . biological_region 9597 9599 0.999 - . logic_name=eponine scaffold_133 . biological_region 9719 9724 0.999 - . logic_name=eponine scaffold_133 . biological_region 9720 9725 0.999 + . logic_name=eponine scaffold_133 ensembl protein_coding_gene 1220 1753 . + . ID=Phyra84979;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000001;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 1220 1753 . + . ID=Phyra84979;Parent=Phyra84979;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 1220 1753 . + 0 ID=Phyra84979;Parent=Phyra84979;rank=1 scaffold_133 . exon 1220 1753 . + . ID=Phyra84979.1;Parent=Phyra84979;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 3886 5295 . - . ID=Phyra84982;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000004;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 3886 5295 . - . ID=Phyra84982;Parent=Phyra84982;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 3886 5295 . - 0 ID=Phyra84982;Parent=Phyra84982;rank=1 scaffold_133 . exon 3886 5295 . - . ID=Phyra84982.1;Parent=Phyra84982;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 6815 10993 . - . ID=Phyra84983;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000005;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 6815 10993 . - . ID=Phyra84983;Parent=Phyra84983;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 6815 7195 . - 0 ID=Phyra84983;Parent=Phyra84983;rank=3 scaffold_133 . exon 6815 7195 . - . ID=Phyra84983.3;Parent=Phyra84983;constitutive=1;rank=3 scaffold_133 . CDS 7846 9168 . - 0 ID=Phyra84983;Parent=Phyra84983;rank=2 scaffold_133 . exon 7846 9168 . - . ID=Phyra84983.2;Parent=Phyra84983;constitutive=1;rank=2 scaffold_133 . CDS 9311 10993 . - 0 ID=Phyra84983;Parent=Phyra84983;rank=1 scaffold_133 . exon 9311 10993 . - . ID=Phyra84983.1;Parent=Phyra84983;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 2380 2837 . + . ID=Phyra97017;biotype=protein_coding;external_name=C_scaffold_133000001;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 2380 2837 . + . ID=Phyra97017;Parent=Phyra97017;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 2380 2618 . + 0 ID=Phyra97017;Parent=Phyra97017;rank=1 scaffold_133 . exon 2380 2618 . + . ID=Phyra97017.1;Parent=Phyra97017;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_133 . CDS 2777 2837 . + 0 ID=Phyra97017;Parent=Phyra97017;rank=2 scaffold_133 . exon 2777 2837 . + . ID=Phyra97017.2;Parent=Phyra97017;constitutive=1;ensembl_phase=2;rank=2 scaffold_133 ensembl protein_coding_gene 3239 3541 . - . ID=Phyra97018;biotype=protein_coding;external_name=C_scaffold_133000002;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 3239 3541 . - . ID=Phyra97018;Parent=Phyra97018;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 3239 3541 . - 0 ID=Phyra97018;Parent=Phyra97018;rank=1 scaffold_133 . exon 3239 3541 . - . ID=Phyra97018.1;Parent=Phyra97018;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 16302 17807 . + . ID=Phyra84984;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000006;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 16302 17807 . + . ID=Phyra84984;Parent=Phyra84984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 16302 17807 . + 0 ID=Phyra84984;Parent=Phyra84984;rank=1 scaffold_133 . exon 16302 17807 . + . ID=Phyra84984.1;Parent=Phyra84984;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 11611 12276 . + . ID=Phyra97021;biotype=protein_coding;external_name=C_scaffold_133000005;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 11611 12276 . + . ID=Phyra97021;Parent=Phyra97021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 11611 11959 . + 0 ID=Phyra97021;Parent=Phyra97021;rank=1 scaffold_133 . exon 11611 11959 . + . ID=Phyra97021.1;Parent=Phyra97021;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_133 . CDS 12026 12276 . + 0 ID=Phyra97021;Parent=Phyra97021;rank=2 scaffold_133 . exon 12026 12276 . + . ID=Phyra97021.2;Parent=Phyra97021;constitutive=1;ensembl_phase=1;rank=2 scaffold_133 . repeat_region 22660 23292 . ? . description=dust scaffold_133 . repeat_region 26835 39552 . ? . description=dust scaffold_133 ensembl protein_coding_gene 22490 24235 . - . ID=Phyra84985;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000007;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 22490 24235 . - . ID=Phyra84985;Parent=Phyra84985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 22490 22526 . - 0 ID=Phyra84985;Parent=Phyra84985;rank=2 scaffold_133 . exon 22490 22526 . - . ID=Phyra84985.2;Parent=Phyra84985;constitutive=1;ensembl_phase=2;rank=2 scaffold_133 . CDS 23307 24235 . - 0 ID=Phyra84985;Parent=Phyra84985;rank=1 scaffold_133 . exon 23307 24235 . - . ID=Phyra84985.1;Parent=Phyra84985;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_133 ensembl protein_coding_gene 24807 26152 . - . ID=Phyra84986;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000008;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 24807 26152 . - . ID=Phyra84986;Parent=Phyra84986;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 24807 25577 . - 0 ID=Phyra84986;Parent=Phyra84986;rank=5 scaffold_133 . exon 24807 25577 . - . ID=Phyra84986.5;Parent=Phyra84986;constitutive=1;rank=5 scaffold_133 . CDS 25663 25780 . - 0 ID=Phyra84986;Parent=Phyra84986;rank=4 scaffold_133 . exon 25663 25780 . - . ID=Phyra84986.4;Parent=Phyra84986;constitutive=1;ensembl_phase=2;rank=4 scaffold_133 . CDS 25805 25857 . - 0 ID=Phyra84986;Parent=Phyra84986;rank=3 scaffold_133 . exon 25805 25857 . - . ID=Phyra84986.3;Parent=Phyra84986;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_133 . CDS 25925 26078 . - 0 ID=Phyra84986;Parent=Phyra84986;rank=2 scaffold_133 . exon 25925 26078 . - . ID=Phyra84986.2;Parent=Phyra84986;constitutive=1;ensembl_phase=2;rank=2 scaffold_133 . CDS 26142 26152 . - 0 ID=Phyra84986;Parent=Phyra84986;rank=1 scaffold_133 . exon 26142 26152 . - . ID=Phyra84986.1;Parent=Phyra84986;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_133 . repeat_region 26835 39552 . ? . description=dust scaffold_133 . biological_region 42157 42161 0.999 + . logic_name=eponine scaffold_133 . repeat_region 45997 46030 . ? . description=trf scaffold_133 . repeat_region 46784 46792 . ? . description=dust scaffold_133 ensembl protein_coding_gene 46621 47354 . + . ID=Phyra72292;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_133000001;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 46621 47354 . + . ID=Phyra72292;Parent=Phyra72292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 46621 46692 . + 0 ID=Phyra72292;Parent=Phyra72292;rank=1 scaffold_133 . exon 46621 46692 . + . ID=Phyra72292.1;Parent=Phyra72292;constitutive=1;rank=1 scaffold_133 . CDS 46798 46839 . + 0 ID=Phyra72292;Parent=Phyra72292;rank=2 scaffold_133 . exon 46798 46839 . + . ID=Phyra72292.2;Parent=Phyra72292;constitutive=1;rank=2 scaffold_133 . CDS 46944 47354 . + 0 ID=Phyra72292;Parent=Phyra72292;rank=3 scaffold_133 . exon 46944 47354 . + . ID=Phyra72292.3;Parent=Phyra72292;constitutive=1;rank=3 scaffold_133 ensembl protein_coding_gene 39955 41284 . - . ID=Phyra84987;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000009;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 39955 41284 . - . ID=Phyra84987;Parent=Phyra84987;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 39955 39982 . - 0 ID=Phyra84987;Parent=Phyra84987;rank=4 scaffold_133 . exon 39955 39982 . - . ID=Phyra84987.4;Parent=Phyra84987;constitutive=1;ensembl_phase=2;rank=4 scaffold_133 . CDS 40098 40801 . - 0 ID=Phyra84987;Parent=Phyra84987;rank=3 scaffold_133 . exon 40098 40801 . - . ID=Phyra84987.3;Parent=Phyra84987;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_133 . CDS 40993 41046 . - 0 ID=Phyra84987;Parent=Phyra84987;rank=2 scaffold_133 . exon 40993 41046 . - . ID=Phyra84987.2;Parent=Phyra84987;constitutive=1;rank=2 scaffold_133 . CDS 41126 41284 . - 0 ID=Phyra84987;Parent=Phyra84987;rank=1 scaffold_133 . exon 41126 41284 . - . ID=Phyra84987.1;Parent=Phyra84987;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 41944 46211 . + . ID=Phyra84988;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000010;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 41944 46211 . + . ID=Phyra84988;Parent=Phyra84988;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 41944 44602 . + 0 ID=Phyra84988;Parent=Phyra84988;rank=1 scaffold_133 . exon 41944 44602 . + . ID=Phyra84988.1;Parent=Phyra84988;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_133 . CDS 44822 45772 . + 0 ID=Phyra84988;Parent=Phyra84988;rank=2 scaffold_133 . exon 44822 45772 . + . ID=Phyra84988.2;Parent=Phyra84988;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_133 . CDS 45856 45914 . + 0 ID=Phyra84988;Parent=Phyra84988;rank=3 scaffold_133 . exon 45856 45914 . + . ID=Phyra84988.3;Parent=Phyra84988;constitutive=1;ensembl_phase=1;rank=3 scaffold_133 . CDS 45978 46211 . + 0 ID=Phyra84988;Parent=Phyra84988;rank=4 scaffold_133 . exon 45978 46211 . + . ID=Phyra84988.4;Parent=Phyra84988;constitutive=1;rank=4 scaffold_133 ensembl protein_coding_gene 51314 52348 . + . ID=Phyra72293;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_133000002;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 51314 52348 . + . ID=Phyra72293;Parent=Phyra72293;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 51314 52348 . + 0 ID=Phyra72293;Parent=Phyra72293;rank=1 scaffold_133 . exon 51314 52348 . + . ID=Phyra72293.1;Parent=Phyra72293;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 50396 51179 . + . ID=Phyra84990;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000012;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 50396 51179 . + . ID=Phyra84990;Parent=Phyra84990;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 50396 50398 . + 0 ID=Phyra84990;Parent=Phyra84990;rank=1 scaffold_133 . exon 50396 50398 . + . ID=Phyra84990.1;Parent=Phyra84990;constitutive=1;rank=1 scaffold_133 . CDS 50437 50595 . + 0 ID=Phyra84990;Parent=Phyra84990;rank=2 scaffold_133 . exon 50437 50595 . + . ID=Phyra84990.2;Parent=Phyra84990;constitutive=1;rank=2 scaffold_133 . CDS 50698 50761 . + 0 ID=Phyra84990;Parent=Phyra84990;rank=3 scaffold_133 . exon 50698 50761 . + . ID=Phyra84990.3;Parent=Phyra84990;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_133 . CDS 50818 51050 . + 0 ID=Phyra84990;Parent=Phyra84990;rank=4 scaffold_133 . exon 50818 51050 . + . ID=Phyra84990.4;Parent=Phyra84990;constitutive=1;ensembl_phase=1;rank=4 scaffold_133 . CDS 51129 51179 . + 0 ID=Phyra84990;Parent=Phyra84990;rank=5 scaffold_133 . exon 51129 51179 . + . ID=Phyra84990.5;Parent=Phyra84990;constitutive=1;rank=5 scaffold_133 ensembl protein_coding_gene 55332 56798 . + . ID=Phyra84992;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000014;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 55332 56798 . + . ID=Phyra84992;Parent=Phyra84992;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 55332 56798 . + 0 ID=Phyra84992;Parent=Phyra84992;rank=1 scaffold_133 . exon 55332 56798 . + . ID=Phyra84992.1;Parent=Phyra84992;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 57002 59095 . - . ID=Phyra84993;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000015;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 57002 59095 . - . ID=Phyra84993;Parent=Phyra84993;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 57002 59095 . - 0 ID=Phyra84993;Parent=Phyra84993;rank=1 scaffold_133 . exon 57002 59095 . - . ID=Phyra84993.1;Parent=Phyra84993;constitutive=1;rank=1 scaffold_133 . biological_region 58365 58371 0.999 + . logic_name=eponine scaffold_133 . biological_region 58377 58383 0.999 - . logic_name=eponine scaffold_133 . biological_region 58484 58484 0.999 - . logic_name=eponine scaffold_133 . biological_region 58583 58584 0.999 + . logic_name=eponine scaffold_133 . biological_region 58673 58673 0.999 - . logic_name=eponine scaffold_133 . biological_region 58753 58755 0.999 + . logic_name=eponine scaffold_133 . biological_region 59770 59776 0.999 + . logic_name=eponine scaffold_133 ensembl tRNA_gene 63778 63858 . + . ID=EPrPRAG00000000053;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_133 ensembl transcript 63778 63858 . + . ID=EPrPRAT00000000053;Parent=EPrPRAG00000000053;biotype=tRNA;logic_name=ncrna_eg scaffold_133 . exon 63778 63858 . + . ID=EPrPRAE00000000053;Parent=EPrPRAT00000000053;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 65597 67601 . - . ID=Phyra41277;biotype=protein_coding;external_name=gwEuk.133.25.1;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 65597 67601 . - . ID=Phyra41277;Parent=Phyra41277;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 65597 65988 . - 0 ID=Phyra41277;Parent=Phyra41277;rank=3 scaffold_133 . exon 65597 65988 . - . ID=Phyra41277.3;Parent=Phyra41277;constitutive=1;ensembl_phase=1;rank=3 scaffold_133 . CDS 66070 67429 . - 0 ID=Phyra41277;Parent=Phyra41277;rank=2 scaffold_133 . exon 66070 67429 . - . ID=Phyra41277.2;Parent=Phyra41277;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_133 . CDS 67533 67601 . - 0 ID=Phyra41277;Parent=Phyra41277;rank=1 scaffold_133 . exon 67533 67601 . - . ID=Phyra41277.1;Parent=Phyra41277;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 59744 60805 . + . ID=Phyra72294;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_133000003;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 59744 60805 . + . ID=Phyra72294;Parent=Phyra72294;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 59744 60805 . + 0 ID=Phyra72294;Parent=Phyra72294;rank=1 scaffold_133 . exon 59744 60805 . + . ID=Phyra72294.1;Parent=Phyra72294;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 62850 63476 . + . ID=Phyra84995;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000017;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 62850 63476 . + . ID=Phyra84995;Parent=Phyra84995;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 62850 63476 . + 0 ID=Phyra84995;Parent=Phyra84995;rank=1 scaffold_133 . exon 62850 63476 . + . ID=Phyra84995.1;Parent=Phyra84995;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 67876 69351 . + . ID=Phyra84997;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000019;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 67876 69351 . + . ID=Phyra84997;Parent=Phyra84997;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 67876 68385 . + 0 ID=Phyra84997;Parent=Phyra84997;rank=1 scaffold_133 . exon 67876 68385 . + . ID=Phyra84997.1;Parent=Phyra84997;constitutive=1;rank=1 scaffold_133 . CDS 68461 69351 . + 0 ID=Phyra84997;Parent=Phyra84997;rank=2 scaffold_133 . repeat_region 69575 69608 . ? . description=trf scaffold_133 . repeat_region 71175 71205 . ? . description=trf scaffold_133 . repeat_region 76398 76405 . ? . description=dust scaffold_133 . exon 68461 69351 . + . ID=Phyra84997.2;Parent=Phyra84997;constitutive=1;rank=2 scaffold_133 ensembl protein_coding_gene 72177 72728 . + . ID=Phyra84998;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000020;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 72177 72728 . + . ID=Phyra84998;Parent=Phyra84998;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 72177 72728 . + 0 ID=Phyra84998;Parent=Phyra84998;rank=1 scaffold_133 . exon 72177 72728 . + . ID=Phyra84998.1;Parent=Phyra84998;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 73275 75866 . + . ID=Phyra84999;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000021;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 73275 75866 . + . ID=Phyra84999;Parent=Phyra84999;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 73275 75866 . + 0 ID=Phyra84999;Parent=Phyra84999;rank=1 scaffold_133 . exon 73275 75866 . + . ID=Phyra84999.1;Parent=Phyra84999;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 77618 79025 . + . ID=Phyra85000;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000022;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 77618 79025 . + . ID=Phyra85000;Parent=Phyra85000;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 77618 77965 . + 0 ID=Phyra85000;Parent=Phyra85000;rank=1 scaffold_133 . exon 77618 77965 . + . ID=Phyra85000.1;Parent=Phyra85000;constitutive=1;rank=1 scaffold_133 . CDS 78039 79025 . + 0 ID=Phyra85000;Parent=Phyra85000;rank=2 scaffold_133 . biological_region 78792 78794 0.999 + . logic_name=eponine scaffold_133 . biological_region 78856 78860 0.999 + . logic_name=eponine scaffold_133 . biological_region 78939 78940 0.999 - . logic_name=eponine scaffold_133 . biological_region 79463 79467 0.999 + . logic_name=eponine scaffold_133 . biological_region 79495 79497 0.999 + . logic_name=eponine scaffold_133 . biological_region 79534 79535 0.999 + . logic_name=eponine scaffold_133 . biological_region 83068 83068 0.999 - . logic_name=eponine scaffold_133 . biological_region 83309 83316 0.999 - . logic_name=eponine scaffold_133 . biological_region 84810 84814 0.999 - . logic_name=eponine scaffold_133 . biological_region 85967 85969 0.999 - . logic_name=eponine scaffold_133 . biological_region 86868 86871 0.999 - . logic_name=eponine scaffold_133 . biological_region 87062 87066 0.999 + . logic_name=eponine scaffold_133 . biological_region 87116 87121 0.999 + . logic_name=eponine scaffold_133 . exon 78039 79025 . + . ID=Phyra85000.2;Parent=Phyra85000;constitutive=1;rank=2 scaffold_133 ensembl protein_coding_gene 79420 81097 . + . ID=Phyra85001;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000023;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 79420 81097 . + . ID=Phyra85001;Parent=Phyra85001;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 79420 80124 . + 0 ID=Phyra85001;Parent=Phyra85001;rank=1 scaffold_133 . exon 79420 80124 . + . ID=Phyra85001.1;Parent=Phyra85001;constitutive=1;rank=1 scaffold_133 . CDS 80297 81097 . + 0 ID=Phyra85001;Parent=Phyra85001;rank=2 scaffold_133 . exon 80297 81097 . + . ID=Phyra85001.2;Parent=Phyra85001;constitutive=1;rank=2 scaffold_133 ensembl protein_coding_gene 82142 87430 . - . ID=Phyra97025;biotype=protein_coding;external_name=C_scaffold_133000009;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 82142 87430 . - . ID=Phyra97025;Parent=Phyra97025;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 82142 82148 . - 0 ID=Phyra97025;Parent=Phyra97025;rank=14 scaffold_133 . exon 82142 82148 . - . ID=Phyra97025.14;Parent=Phyra97025;constitutive=1;ensembl_phase=2;rank=14 scaffold_133 . CDS 82297 82572 . - 0 ID=Phyra97025;Parent=Phyra97025;rank=13 scaffold_133 . exon 82297 82572 . - . ID=Phyra97025.13;Parent=Phyra97025;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=13 scaffold_133 . CDS 82752 82928 . - 0 ID=Phyra97025;Parent=Phyra97025;rank=12 scaffold_133 . exon 82752 82928 . - . ID=Phyra97025.12;Parent=Phyra97025;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=12 scaffold_133 . CDS 82968 83557 . - 0 ID=Phyra97025;Parent=Phyra97025;rank=11 scaffold_133 . exon 82968 83557 . - . ID=Phyra97025.11;Parent=Phyra97025;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_133 . CDS 83632 83826 . - 0 ID=Phyra97025;Parent=Phyra97025;rank=10 scaffold_133 . exon 83632 83826 . - . ID=Phyra97025.10;Parent=Phyra97025;constitutive=1;rank=10 scaffold_133 . CDS 83884 84063 . - 0 ID=Phyra97025;Parent=Phyra97025;rank=9 scaffold_133 . exon 83884 84063 . - . ID=Phyra97025.9;Parent=Phyra97025;constitutive=1;rank=9 scaffold_133 . CDS 84211 84380 . - 0 ID=Phyra97025;Parent=Phyra97025;rank=8 scaffold_133 . exon 84211 84380 . - . ID=Phyra97025.8;Parent=Phyra97025;constitutive=1;ensembl_phase=1;rank=8 scaffold_133 . CDS 84447 85056 . - 0 ID=Phyra97025;Parent=Phyra97025;rank=7 scaffold_133 . exon 84447 85056 . - . ID=Phyra97025.7;Parent=Phyra97025;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_133 . CDS 85123 85317 . - 0 ID=Phyra97025;Parent=Phyra97025;rank=6 scaffold_133 . exon 85123 85317 . - . ID=Phyra97025.6;Parent=Phyra97025;constitutive=1;rank=6 scaffold_133 . CDS 85380 85464 . - 0 ID=Phyra97025;Parent=Phyra97025;rank=5 scaffold_133 . exon 85380 85464 . - . ID=Phyra97025.5;Parent=Phyra97025;constitutive=1;ensembl_phase=2;rank=5 scaffold_133 . CDS 86010 86150 . - 0 ID=Phyra97025;Parent=Phyra97025;rank=4 scaffold_133 . exon 86010 86150 . - . ID=Phyra97025.4;Parent=Phyra97025;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_133 . CDS 86274 87019 . - 0 ID=Phyra97025;Parent=Phyra97025;rank=3 scaffold_133 . exon 86274 87019 . - . ID=Phyra97025.3;Parent=Phyra97025;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_133 . CDS 87075 87269 . - 0 ID=Phyra97025;Parent=Phyra97025;rank=2 scaffold_133 . exon 87075 87269 . - . ID=Phyra97025.2;Parent=Phyra97025;constitutive=1;rank=2 scaffold_133 . CDS 87335 87430 . - 0 ID=Phyra97025;Parent=Phyra97025;rank=1 scaffold_133 . exon 87335 87430 . - . ID=Phyra97025.1;Parent=Phyra97025;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 87952 88997 . + . ID=Phyra85005;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000027;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 87952 88997 . + . ID=Phyra85005;Parent=Phyra85005;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 87952 88721 . + 0 ID=Phyra85005;Parent=Phyra85005;rank=1 scaffold_133 . exon 87952 88721 . + . ID=Phyra85005.1;Parent=Phyra85005;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_133 . CDS 88790 88997 . + 0 ID=Phyra85005;Parent=Phyra85005;rank=2 scaffold_133 . exon 88790 88997 . + . ID=Phyra85005.2;Parent=Phyra85005;constitutive=1;ensembl_phase=2;rank=2 scaffold_133 ensembl protein_coding_gene 89156 90685 . - . ID=Phyra85006;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000028;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 89156 90685 . - . ID=Phyra85006;Parent=Phyra85006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 89156 89791 . - 0 ID=Phyra85006;Parent=Phyra85006;rank=3 scaffold_133 . exon 89156 89791 . - . ID=Phyra85006.3;Parent=Phyra85006;constitutive=1;rank=3 scaffold_133 . CDS 89881 90528 . - 0 ID=Phyra85006;Parent=Phyra85006;rank=2 scaffold_133 . exon 89881 90528 . - . ID=Phyra85006.2;Parent=Phyra85006;constitutive=1;rank=2 scaffold_133 . CDS 90593 90685 . - 0 ID=Phyra85006;Parent=Phyra85006;rank=1 scaffold_133 . exon 90593 90685 . - . ID=Phyra85006.1;Parent=Phyra85006;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 92035 93276 . - . ID=Phyra85007;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000029;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 92035 93276 . - . ID=Phyra85007;Parent=Phyra85007;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 92035 93276 . - 0 ID=Phyra85007;Parent=Phyra85007;rank=1 scaffold_133 . exon 92035 93276 . - . ID=Phyra85007.1;Parent=Phyra85007;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 95319 96335 . - . ID=Phyra85008;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_133000030;logic_name=jgi_phyra1 scaffold_133 ensembl transcript 95319 96335 . - . ID=Phyra85008;Parent=Phyra85008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_133 . CDS 95319 96335 . - 0 ID=Phyra85008;Parent=Phyra85008;rank=1 scaffold_133 . exon 95319 96335 . - . ID=Phyra85008.1;Parent=Phyra85008;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_129 1 100030 scaffold_129 . repeat_region 2327 9783 . ? . description=dust scaffold_129 . repeat_region 15103 15146 . ? . description=trf scaffold_129 . repeat_region 17444 17472 . ? . description=trf scaffold_129 . repeat_region 17906 17989 . ? . description=trf scaffold_129 ensembl protein_coding_gene 11089 13242 . - . ID=Phyra84894;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_129000001;logic_name=jgi_phyra1 scaffold_129 ensembl transcript 11089 13242 . - . ID=Phyra84894;Parent=Phyra84894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_129 . CDS 11089 11963 . - 0 ID=Phyra84894;Parent=Phyra84894;rank=4 scaffold_129 . exon 11089 11963 . - . ID=Phyra84894.4;Parent=Phyra84894;constitutive=1;ensembl_phase=1;rank=4 scaffold_129 . CDS 12020 12470 . - 0 ID=Phyra84894;Parent=Phyra84894;rank=3 scaffold_129 . exon 12020 12470 . - . ID=Phyra84894.3;Parent=Phyra84894;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_129 . CDS 12529 12578 . - 0 ID=Phyra84894;Parent=Phyra84894;rank=2 scaffold_129 . exon 12529 12578 . - . ID=Phyra84894.2;Parent=Phyra84894;constitutive=1;ensembl_phase=1;rank=2 scaffold_129 . CDS 12771 13242 . - 0 ID=Phyra84894;Parent=Phyra84894;rank=1 scaffold_129 . exon 12771 13242 . - . ID=Phyra84894.1;Parent=Phyra84894;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_129 . repeat_region 18907 18956 . ? . description=dust scaffold_129 . biological_region 23311 23313 0.999 + . logic_name=eponine scaffold_129 . biological_region 23355 23356 0.999 - . logic_name=eponine scaffold_129 . repeat_region 26893 26902 . ? . description=dust scaffold_129 ensembl protein_coding_gene 21217 21924 . + . ID=Phyra84895;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_129000002;logic_name=jgi_phyra1 scaffold_129 ensembl transcript 21217 21924 . + . ID=Phyra84895;Parent=Phyra84895;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_129 . CDS 21217 21427 . + 0 ID=Phyra84895;Parent=Phyra84895;rank=1 scaffold_129 . exon 21217 21427 . + . ID=Phyra84895.1;Parent=Phyra84895;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_129 . CDS 21656 21924 . + 0 ID=Phyra84895;Parent=Phyra84895;rank=2 scaffold_129 . exon 21656 21924 . + . ID=Phyra84895.2;Parent=Phyra84895;constitutive=1;ensembl_phase=1;rank=2 scaffold_129 . repeat_region 33509 33667 . + . description=GypsyPi-1c_LTR scaffold_129 . repeat_region 33668 34918 . + . description=GypsyPi-1c_I-int scaffold_129 . repeat_region 34948 35897 . + . description=GypsyPi-1c_I-int scaffold_129 . repeat_region 36160 36330 . + . description=GypsyPi-1c_I-int scaffold_129 ensembl protein_coding_gene 31113 32113 . + . ID=Phyra40892;biotype=protein_coding;external_name=gwEuk.129.4.1;logic_name=jgi_phyra1 scaffold_129 ensembl transcript 31113 32113 . + . ID=Phyra40892;Parent=Phyra40892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_129 . CDS 31113 31779 . + 0 ID=Phyra40892;Parent=Phyra40892;rank=1 scaffold_129 . exon 31113 31779 . + . ID=Phyra40892.1;Parent=Phyra40892;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_129 . CDS 31842 32113 . + 0 ID=Phyra40892;Parent=Phyra40892;rank=2 scaffold_129 . exon 31842 32113 . + . ID=Phyra40892.2;Parent=Phyra40892;constitutive=1;ensembl_phase=1;rank=2 scaffold_129 . repeat_region 36613 36623 . ? . description=dust scaffold_129 . repeat_region 42079 42121 . ? . description=trf scaffold_129 . repeat_region 45127 45134 . ? . description=dust scaffold_129 ensembl protein_coding_gene 54185 55374 . + . ID=Phyra84896;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_129000003;logic_name=jgi_phyra1 scaffold_129 ensembl transcript 54185 55374 . + . ID=Phyra84896;Parent=Phyra84896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_129 . CDS 54185 54435 . + 0 ID=Phyra84896;Parent=Phyra84896;rank=1 scaffold_129 . exon 54185 54435 . + . ID=Phyra84896.1;Parent=Phyra84896;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_129 . CDS 54688 55083 . + 0 ID=Phyra84896;Parent=Phyra84896;rank=2 scaffold_129 . CDS 55149 55374 . + 0 ID=Phyra84896;Parent=Phyra84896;rank=3 scaffold_129 . repeat_region 56773 56781 . ? . description=dust scaffold_129 . biological_region 59101 59105 0.999 - . logic_name=eponine scaffold_129 . repeat_region 59791 62742 . - . description=GypsyPi-1c_I-int scaffold_129 . biological_region 60806 60808 0.999 + . logic_name=eponine scaffold_129 . biological_region 60842 60845 0.999 + . logic_name=eponine scaffold_129 . biological_region 62951 62955 0.999 - . logic_name=eponine scaffold_129 . repeat_region 63221 63602 . - . description=GypsyPi-1c_I-int scaffold_129 . exon 54688 55083 . + . ID=Phyra84896.2;Parent=Phyra84896;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_129 . exon 55149 55374 . + . ID=Phyra84896.3;Parent=Phyra84896;constitutive=1;ensembl_phase=2;rank=3 scaffold_129 ensembl protein_coding_gene 57297 58663 . + . ID=Phyra84897;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_129000004;logic_name=jgi_phyra1 scaffold_129 ensembl transcript 57297 58663 . + . ID=Phyra84897;Parent=Phyra84897;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_129 . CDS 57297 57324 . + 0 ID=Phyra84897;Parent=Phyra84897;rank=1 scaffold_129 . exon 57297 57324 . + . ID=Phyra84897.1;Parent=Phyra84897;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_129 . CDS 57383 57398 . + 0 ID=Phyra84897;Parent=Phyra84897;rank=2 scaffold_129 . exon 57383 57398 . + . ID=Phyra84897.2;Parent=Phyra84897;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_129 . CDS 58033 58663 . + 0 ID=Phyra84897;Parent=Phyra84897;rank=3 scaffold_129 . exon 58033 58663 . + . ID=Phyra84897.3;Parent=Phyra84897;constitutive=1;ensembl_phase=2;rank=3 scaffold_129 ensembl protein_coding_gene 60552 64907 . - . ID=Phyra84898;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_129000005;logic_name=jgi_phyra1 scaffold_129 ensembl transcript 60552 64907 . - . ID=Phyra84898;Parent=Phyra84898;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_129 . CDS 60552 61819 . - 0 ID=Phyra84898;Parent=Phyra84898;rank=6 scaffold_129 . exon 60552 61819 . - . ID=Phyra84898.6;Parent=Phyra84898;constitutive=1;ensembl_phase=1;rank=6 scaffold_129 . CDS 61909 62254 . - 0 ID=Phyra84898;Parent=Phyra84898;rank=5 scaffold_129 . exon 61909 62254 . - . ID=Phyra84898.5;Parent=Phyra84898;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_129 . CDS 62318 63612 . - 0 ID=Phyra84898;Parent=Phyra84898;rank=4 scaffold_129 . exon 62318 63612 . - . ID=Phyra84898.4;Parent=Phyra84898;constitutive=1;ensembl_phase=1;rank=4 scaffold_129 . CDS 63719 64065 . - 0 ID=Phyra84898;Parent=Phyra84898;rank=3 scaffold_129 . CDS 64125 64353 . - 0 ID=Phyra84898;Parent=Phyra84898;rank=2 scaffold_129 . CDS 64496 64907 . - 0 ID=Phyra84898;Parent=Phyra84898;rank=1 scaffold_129 . repeat_region 64259 64282 . ? . description=trf scaffold_129 . repeat_region 69466 69492 . ? . description=trf scaffold_129 . repeat_region 71668 71687 . ? . description=trf scaffold_129 . exon 63719 64065 . - . ID=Phyra84898.3;Parent=Phyra84898;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_129 . exon 64125 64353 . - . ID=Phyra84898.2;Parent=Phyra84898;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_129 . exon 64496 64907 . - . ID=Phyra84898.1;Parent=Phyra84898;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_129 . repeat_region 73884 74169 . ? . description=dust scaffold_129 . repeat_region 74479 74487 . ? . description=dust scaffold_129 . biological_region 74981 74988 0.999 + . logic_name=eponine scaffold_129 . repeat_region 75720 95828 . ? . description=dust scaffold_129 ensembl protein_coding_gene 74689 75462 . - . ID=Phyra84899;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_129000006;logic_name=jgi_phyra1 scaffold_129 ensembl transcript 74689 75462 . - . ID=Phyra84899;Parent=Phyra84899;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_129 . CDS 74689 75462 . - 0 ID=Phyra84899;Parent=Phyra84899;rank=1 scaffold_129 . exon 74689 75462 . - . ID=Phyra84899.1;Parent=Phyra84899;constitutive=1;rank=1 scaffold_129 . repeat_region 75720 95828 . ? . description=dust scaffold_129 . repeat_region 97250 97261 . ? . description=dust scaffold_129 . repeat_region 97274 97993 . ? . description=dust scaffold_129 . repeat_region 99823 99831 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_124 1 100713 scaffold_124 . repeat_region 1012 2947 . ? . description=dust scaffold_124 . biological_region 4835 4836 0.999 - . logic_name=eponine scaffold_124 . repeat_region 4838 4891 . ? . description=trf scaffold_124 . biological_region 4872 4878 0.999 - . logic_name=eponine scaffold_124 . biological_region 6431 6435 0.999 - . logic_name=eponine scaffold_124 . biological_region 6737 6743 0.999 - . logic_name=eponine scaffold_124 . biological_region 7091 7092 0.999 - . logic_name=eponine scaffold_124 . biological_region 8295 8297 0.999 - . logic_name=eponine scaffold_124 . biological_region 8314 8315 0.999 - . logic_name=eponine scaffold_124 . repeat_region 8349 8368 . ? . description=trf scaffold_124 . biological_region 8381 8381 0.999 - . logic_name=eponine scaffold_124 . biological_region 8880 8882 0.999 + . logic_name=eponine scaffold_124 . biological_region 9144 9150 0.999 + . logic_name=eponine scaffold_124 ensembl pseudogene 3372 3965 . - . ID=Phyra40720;biotype=pseudogene;external_name=gwEuk.124.4.1;logic_name=jgi_phyra1 scaffold_124 ensembl pseudogene 3372 3965 . - . ID=Phyra40720;Parent=Phyra40720;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_124 . exon 3372 3505 . - . ID=Phyra40720.2;Parent=Phyra40720;constitutive=1;ensembl_phase=1;rank=2 scaffold_124 . exon 3521 3965 . - . ID=Phyra40720.1;Parent=Phyra40720;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_124 ensembl protein_coding_gene 418 3198 . + . ID=Phyra84758;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_124000001;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 418 3198 . + . ID=Phyra84758;Parent=Phyra84758;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 418 980 . + 0 ID=Phyra84758;Parent=Phyra84758;rank=1 scaffold_124 . exon 418 980 . + . ID=Phyra84758.1;Parent=Phyra84758;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_124 . CDS 3069 3198 . + 0 ID=Phyra84758;Parent=Phyra84758;rank=2 scaffold_124 . exon 3069 3198 . + . ID=Phyra84758.2;Parent=Phyra84758;constitutive=1;ensembl_phase=2;rank=2 scaffold_124 ensembl protein_coding_gene 6025 7608 . + . ID=Phyra84760;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_124000003;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 6025 7608 . + . ID=Phyra84760;Parent=Phyra84760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 6025 7608 . + 0 ID=Phyra84760;Parent=Phyra84760;rank=1 scaffold_124 . exon 6025 7608 . + . ID=Phyra84760.1;Parent=Phyra84760;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 7732 8958 . - . ID=Phyra84761;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_124000004;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 7732 8958 . - . ID=Phyra84761;Parent=Phyra84761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 7732 8958 . - 0 ID=Phyra84761;Parent=Phyra84761;rank=1 scaffold_124 . exon 7732 8958 . - . ID=Phyra84761.1;Parent=Phyra84761;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 9150 10571 . + . ID=Phyra84762;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_124000005;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 9150 10571 . + . ID=Phyra84762;Parent=Phyra84762;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 9150 10571 . + 0 ID=Phyra84762;Parent=Phyra84762;rank=1 scaffold_124 . exon 9150 10571 . + . ID=Phyra84762.1;Parent=Phyra84762;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 11680 13215 . + . ID=Phyra84763;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_124000006;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 11680 13215 . + . ID=Phyra84763;Parent=Phyra84763;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 11680 13215 . + 0 ID=Phyra84763;Parent=Phyra84763;rank=1 scaffold_124 . exon 11680 13215 . + . ID=Phyra84763.1;Parent=Phyra84763;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 13624 15917 . + . ID=Phyra84764;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_124000007;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 13624 15917 . + . ID=Phyra84764;Parent=Phyra84764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 13624 15125 . + 0 ID=Phyra84764;Parent=Phyra84764;rank=1 scaffold_124 . exon 13624 15125 . + . ID=Phyra84764.1;Parent=Phyra84764;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_124 . CDS 15284 15917 . + 0 ID=Phyra84764;Parent=Phyra84764;rank=2 scaffold_124 . exon 15284 15917 . + . ID=Phyra84764.2;Parent=Phyra84764;constitutive=1;ensembl_phase=2;rank=2 scaffold_124 . repeat_region 16024 31140 . ? . description=dust scaffold_124 ensembl protein_coding_gene 32175 32369 . + . ID=Phyra40722;biotype=protein_coding;external_name=gwEuk.124.6.1;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 32175 32369 . + . ID=Phyra40722;Parent=Phyra40722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 32175 32369 . + 0 ID=Phyra40722;Parent=Phyra40722;rank=1 scaffold_124 . exon 32175 32369 . + . ID=Phyra40722.1;Parent=Phyra40722;constitutive=1;rank=1 scaffold_124 . repeat_region 33114 38286 . ? . description=dust scaffold_124 . biological_region 39464 39473 0.999 + . logic_name=eponine scaffold_124 . biological_region 39505 39509 0.999 - . logic_name=eponine scaffold_124 . biological_region 39544 39547 0.999 - . logic_name=eponine scaffold_124 . biological_region 39595 39596 0.999 - . logic_name=eponine scaffold_124 . repeat_region 39634 39683 . ? . description=dust scaffold_124 . repeat_region 40011 40031 . ? . description=trf scaffold_124 . repeat_region 41641 41661 . ? . description=trf scaffold_124 . biological_region 42038 42041 0.999 - . logic_name=eponine scaffold_124 . biological_region 43845 43846 0.999 - . logic_name=eponine scaffold_124 . biological_region 43931 43936 0.999 - . logic_name=eponine scaffold_124 ensembl protein_coding_gene 41682 42743 . + . ID=Phyra72270;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_124000001;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 41682 42743 . + . ID=Phyra72270;Parent=Phyra72270;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 41682 42743 . + 0 ID=Phyra72270;Parent=Phyra72270;rank=1 scaffold_124 . exon 41682 42743 . + . ID=Phyra72270.1;Parent=Phyra72270;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 42893 43978 . - . ID=Phyra72271;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_124000002;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 42893 43978 . - . ID=Phyra72271;Parent=Phyra72271;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 42893 43978 . - 0 ID=Phyra72271;Parent=Phyra72271;rank=1 scaffold_124 . exon 42893 43978 . - . ID=Phyra72271.1;Parent=Phyra72271;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 44839 48096 . + . ID=Phyra72272;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_124000003;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 44839 48096 . + . ID=Phyra72272;Parent=Phyra72272;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 44839 48096 . + 0 ID=Phyra72272;Parent=Phyra72272;rank=1 scaffold_124 . exon 44839 48096 . + . ID=Phyra72272.1;Parent=Phyra72272;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 38535 39961 . + . ID=Phyra84765;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_124000008;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 38535 39961 . + . ID=Phyra84765;Parent=Phyra84765;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 38535 39193 . + 0 ID=Phyra84765;Parent=Phyra84765;rank=1 scaffold_124 . exon 38535 39193 . + . ID=Phyra84765.1;Parent=Phyra84765;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_124 . CDS 39268 39290 . + 0 ID=Phyra84765;Parent=Phyra84765;rank=2 scaffold_124 . exon 39268 39290 . + . ID=Phyra84765.2;Parent=Phyra84765;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_124 . CDS 39371 39605 . + 0 ID=Phyra84765;Parent=Phyra84765;rank=3 scaffold_124 . exon 39371 39605 . + . ID=Phyra84765.3;Parent=Phyra84765;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_124 . CDS 39771 39807 . + 0 ID=Phyra84765;Parent=Phyra84765;rank=4 scaffold_124 . exon 39771 39807 . + . ID=Phyra84765.4;Parent=Phyra84765;constitutive=1;ensembl_phase=2;rank=4 scaffold_124 . CDS 39860 39961 . + 0 ID=Phyra84765;Parent=Phyra84765;rank=5 scaffold_124 . exon 39860 39961 . + . ID=Phyra84765.5;Parent=Phyra84765;constitutive=1;rank=5 scaffold_124 ensembl protein_coding_gene 54717 54911 . - . ID=Phyra40732;biotype=protein_coding;external_name=gwEuk.124.16.1;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 54717 54911 . - . ID=Phyra40732;Parent=Phyra40732;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 54717 54911 . - 0 ID=Phyra40732;Parent=Phyra40732;rank=1 scaffold_124 . exon 54717 54911 . - . ID=Phyra40732.1;Parent=Phyra40732;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 48485 52721 . + . ID=Phyra84769;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_124000012;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 48485 52721 . + . ID=Phyra84769;Parent=Phyra84769;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 48485 51451 . + 0 ID=Phyra84769;Parent=Phyra84769;rank=1 scaffold_124 . exon 48485 51451 . + . ID=Phyra84769.1;Parent=Phyra84769;constitutive=1;rank=1 scaffold_124 . CDS 52641 52721 . + 0 ID=Phyra84769;Parent=Phyra84769;rank=2 scaffold_124 . exon 52641 52721 . + . ID=Phyra84769.2;Parent=Phyra84769;constitutive=1;rank=2 scaffold_124 ensembl protein_coding_gene 53468 54554 . - . ID=Phyra84770;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_124000013;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 53468 54554 . - . ID=Phyra84770;Parent=Phyra84770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 53468 53541 . - 0 ID=Phyra84770;Parent=Phyra84770;rank=2 scaffold_124 . exon 53468 53541 . - . ID=Phyra84770.2;Parent=Phyra84770;constitutive=1;ensembl_phase=1;rank=2 scaffold_124 . CDS 53762 54554 . - 0 ID=Phyra84770;Parent=Phyra84770;rank=1 scaffold_124 . exon 53762 54554 . - . ID=Phyra84770.1;Parent=Phyra84770;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_124 . repeat_region 54981 59905 . ? . description=dust scaffold_124 . biological_region 60808 60810 0.999 + . logic_name=eponine scaffold_124 . biological_region 61326 61327 0.999 + . logic_name=eponine scaffold_124 . repeat_region 61740 61819 . ? . description=dust scaffold_124 . biological_region 63494 63495 0.999 - . logic_name=eponine scaffold_124 . biological_region 64011 64013 0.999 - . logic_name=eponine scaffold_124 ensembl protein_coding_gene 59950 61683 . + . ID=Phyra84771;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_124000014;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 59950 61683 . + . ID=Phyra84771;Parent=Phyra84771;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 59950 61683 . + 0 ID=Phyra84771;Parent=Phyra84771;rank=1 scaffold_124 . exon 59950 61683 . + . ID=Phyra84771.1;Parent=Phyra84771;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 63137 67267 . - . ID=Phyra84772;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_124000015;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 63137 67267 . - . ID=Phyra84772;Parent=Phyra84772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 63137 67267 . - 0 ID=Phyra84772;Parent=Phyra84772;rank=1 scaffold_124 . exon 63137 67267 . - . ID=Phyra84772.1;Parent=Phyra84772;constitutive=1;rank=1 scaffold_124 . repeat_region 68346 68370 . ? . description=trf scaffold_124 . repeat_region 69807 69836 . ? . description=trf scaffold_124 . repeat_region 74785 76004 . - . description=LSU-rRNA_Hca scaffold_124 . repeat_region 75527 75588 . ? . description=dust scaffold_124 . biological_region 78088 78094 0.999 + . logic_name=eponine scaffold_124 . biological_region 78491 78493 0.999 + . logic_name=eponine scaffold_124 . biological_region 78548 78551 0.999 - . logic_name=eponine scaffold_124 . biological_region 80124 80125 0.999 - . logic_name=eponine scaffold_124 . repeat_region 82196 82204 . ? . description=dust scaffold_124 . repeat_region 82266 82273 . ? . description=dust scaffold_124 ensembl protein_coding_gene 75636 75887 . + . ID=Phyra40745;biotype=protein_coding;external_name=gwEuk.124.29.1;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 75636 75887 . + . ID=Phyra40745;Parent=Phyra40745;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 75636 75887 . + 0 ID=Phyra40745;Parent=Phyra40745;rank=1 scaffold_124 . exon 75636 75887 . + . ID=Phyra40745.1;Parent=Phyra40745;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 77965 78276 . - . ID=Phyra84773;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_124000016;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 77965 78276 . - . ID=Phyra84773;Parent=Phyra84773;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 77965 78276 . - 0 ID=Phyra84773;Parent=Phyra84773;rank=1 scaffold_124 . exon 77965 78276 . - . ID=Phyra84773.1;Parent=Phyra84773;constitutive=1;rank=1 scaffold_124 . repeat_region 82928 82984 . ? . description=trf scaffold_124 . repeat_region 83272 83318 . ? . description=trf scaffold_124 . repeat_region 89127 89690 . + . description=SSU-rRNA_Tps scaffold_124 . repeat_region 90327 90431 . ? . description=trf scaffold_124 . repeat_region 90331 90437 . ? . description=trf scaffold_124 . repeat_region 91349 91575 . + . description=SSU-rRNA_Tps scaffold_124 ensembl rRNA_gene 89128 91621 . + . ID=EPrPRAG00000000032;biotype=rRNA;description=18s_rRNA [Source:RNAMMER%3BAcc:18s_rRNA];external_name=18s_rRNA;logic_name=ncrna_eg scaffold_124 ensembl rRNA 89128 91621 . + . ID=EPrPRAT00000000032;Parent=EPrPRAG00000000032;biotype=rRNA;logic_name=ncrna_eg scaffold_124 . exon 89128 91621 . + . ID=EPrPRAE00000000032;Parent=EPrPRAT00000000032;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_124 ensembl protein_coding_gene 84258 85002 . + . ID=Phyra84774;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_124000017;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 84258 85002 . + . ID=Phyra84774;Parent=Phyra84774;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 84258 84950 . + 0 ID=Phyra84774;Parent=Phyra84774;rank=1 scaffold_124 . exon 84258 84950 . + . ID=Phyra84774.1;Parent=Phyra84774;constitutive=1;rank=1 scaffold_124 . CDS 84976 85002 . + 0 ID=Phyra84774;Parent=Phyra84774;rank=2 scaffold_124 . exon 84976 85002 . + . ID=Phyra84774.2;Parent=Phyra84774;constitutive=1;rank=2 scaffold_124 . biological_region 91931 91935 0.999 + . logic_name=eponine scaffold_124 . biological_region 92060 92063 0.999 - . logic_name=eponine scaffold_124 . biological_region 92082 92084 0.999 - . logic_name=eponine scaffold_124 . biological_region 92311 92313 0.999 + . logic_name=eponine scaffold_124 . biological_region 96722 96728 0.999 + . logic_name=eponine scaffold_124 . biological_region 98578 98580 0.999 + . logic_name=eponine scaffold_124 . biological_region 98863 98867 0.999 + . logic_name=eponine scaffold_124 . biological_region 98909 98913 0.999 + . logic_name=eponine scaffold_124 . biological_region 99873 99876 0.999 + . logic_name=eponine scaffold_124 . biological_region 99893 99895 0.999 + . logic_name=eponine scaffold_124 ensembl pseudogene 100441 100653 . + . ID=Phyra40746;biotype=pseudogene;external_name=gwEuk.124.30.1;logic_name=jgi_phyra1 scaffold_124 ensembl pseudogene 100441 100653 . + . ID=Phyra40746;Parent=Phyra40746;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_124 . exon 100441 100653 . + . ID=Phyra40746.1;Parent=Phyra40746;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 91893 93629 . + . ID=Phyra84775;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_124000018;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 91893 93629 . + . ID=Phyra84775;Parent=Phyra84775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 91893 93629 . + 0 ID=Phyra84775;Parent=Phyra84775;rank=1 scaffold_124 . exon 91893 93629 . + . ID=Phyra84775.1;Parent=Phyra84775;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 94271 99798 . - . ID=Phyra84776;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_124000019;logic_name=jgi_phyra1 scaffold_124 ensembl transcript 94271 99798 . - . ID=Phyra84776;Parent=Phyra84776;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_124 . CDS 94271 94273 . - 0 ID=Phyra84776;Parent=Phyra84776;rank=5 scaffold_124 . exon 94271 94273 . - . ID=Phyra84776.5;Parent=Phyra84776;constitutive=1;rank=5 scaffold_124 . CDS 94330 97236 . - 0 ID=Phyra84776;Parent=Phyra84776;rank=4 scaffold_124 . exon 94330 97236 . - . ID=Phyra84776.4;Parent=Phyra84776;constitutive=1;rank=4 scaffold_124 . CDS 97354 97792 . - 0 ID=Phyra84776;Parent=Phyra84776;rank=3 scaffold_124 . exon 97354 97792 . - . ID=Phyra84776.3;Parent=Phyra84776;constitutive=1;ensembl_phase=2;rank=3 scaffold_124 . CDS 97899 98374 . - 0 ID=Phyra84776;Parent=Phyra84776;rank=2 scaffold_124 . exon 97899 98374 . - . ID=Phyra84776.2;Parent=Phyra84776;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_124 . CDS 98413 99798 . - 0 ID=Phyra84776;Parent=Phyra84776;rank=1 scaffold_124 . exon 98413 99798 . - . ID=Phyra84776.1;Parent=Phyra84776;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_131 1 101106 scaffold_131 . repeat_region 1256 4140 . ? . description=dust scaffold_131 . repeat_region 4166 4723 . + . description=GypsyPi-1c_I-int scaffold_131 . repeat_region 5111 5332 . + . description=GypsyPi-1c_I-int scaffold_131 . biological_region 5407 5408 0.999 - . logic_name=eponine scaffold_131 . repeat_region 5458 5580 . ? . description=dust scaffold_131 . biological_region 6198 6201 0.999 + . logic_name=eponine scaffold_131 . biological_region 6291 6292 0.999 - . logic_name=eponine scaffold_131 . biological_region 6381 6386 0.999 + . logic_name=eponine scaffold_131 . repeat_region 8317 8349 . ? . description=trf scaffold_131 ensembl protein_coding_gene 5308 6860 . - . ID=Phyra84923;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000001;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 5308 6860 . - . ID=Phyra84923;Parent=Phyra84923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 5308 5354 . - 0 ID=Phyra84923;Parent=Phyra84923;rank=2 scaffold_131 . exon 5308 5354 . - . ID=Phyra84923.2;Parent=Phyra84923;constitutive=1;ensembl_phase=1;rank=2 scaffold_131 . CDS 5696 6860 . - 0 ID=Phyra84923;Parent=Phyra84923;rank=1 scaffold_131 . exon 5696 6860 . - . ID=Phyra84923.1;Parent=Phyra84923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_131 . repeat_region 11951 23962 . ? . description=dust scaffold_131 . biological_region 24353 24354 0.999 + . logic_name=eponine scaffold_131 . biological_region 24445 24445 0.999 - . logic_name=eponine scaffold_131 . biological_region 24537 24542 0.999 + . logic_name=eponine scaffold_131 . repeat_region 26057 26077 . ? . description=trf scaffold_131 . repeat_region 26057 26077 . ? . description=dust scaffold_131 . repeat_region 26211 26260 . ? . description=dust scaffold_131 . repeat_region 26263 26886 . - . description=GypsyPi-1c_I-int scaffold_131 . biological_region 26625 26626 0.999 - . logic_name=eponine scaffold_131 . biological_region 26779 26780 0.999 + . logic_name=eponine scaffold_131 . repeat_region 26949 26998 . ? . description=dust scaffold_131 . repeat_region 27733 27910 . + . description=Gypsy-2-I_PI-int scaffold_131 . repeat_region 28070 28121 . + . description=Gypsy-2-I_PI-int scaffold_131 . repeat_region 29964 30213 . + . description=Gypsy-2-I_PI-int scaffold_131 . repeat_region 31396 31519 . + . description=Sola3-2_PS scaffold_131 ensembl protein_coding_gene 34780 36471 . + . ID=Phyra84924;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000002;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 34780 36471 . + . ID=Phyra84924;Parent=Phyra84924;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 34780 36471 . + 0 ID=Phyra84924;Parent=Phyra84924;rank=1 scaffold_131 . exon 34780 36471 . + . ID=Phyra84924.1;Parent=Phyra84924;constitutive=1;rank=1 scaffold_131 . biological_region 37188 37194 0.999 + . logic_name=eponine scaffold_131 . biological_region 37272 37276 0.999 - . logic_name=eponine scaffold_131 . biological_region 38067 38072 0.999 - . logic_name=eponine scaffold_131 . repeat_region 38377 38406 . ? . description=trf scaffold_131 . biological_region 38670 38672 0.999 - . logic_name=eponine scaffold_131 . biological_region 41682 41685 0.999 + . logic_name=eponine scaffold_131 . biological_region 41954 41958 0.999 + . logic_name=eponine scaffold_131 . repeat_region 45706 52601 . ? . description=dust scaffold_131 ensembl protein_coding_gene 39838 42018 . - . ID=Phyra41181;biotype=protein_coding;external_name=gwEuk.131.2.1;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 39838 42018 . - . ID=Phyra41181;Parent=Phyra41181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 39838 40834 . - 0 ID=Phyra41181;Parent=Phyra41181;rank=3 scaffold_131 . exon 39838 40834 . - . ID=Phyra41181.3;Parent=Phyra41181;constitutive=1;ensembl_phase=2;rank=3 scaffold_131 . CDS 40911 41215 . - 0 ID=Phyra41181;Parent=Phyra41181;rank=2 scaffold_131 . exon 40911 41215 . - . ID=Phyra41181.2;Parent=Phyra41181;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_131 . CDS 41290 42018 . - 0 ID=Phyra41181;Parent=Phyra41181;rank=1 scaffold_131 . exon 41290 42018 . - . ID=Phyra41181.1;Parent=Phyra41181;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 37925 38797 . + . ID=Phyra84925;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000003;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 37925 38797 . + . ID=Phyra84925;Parent=Phyra84925;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 37925 38797 . + 0 ID=Phyra84925;Parent=Phyra84925;rank=1 scaffold_131 . exon 37925 38797 . + . ID=Phyra84925.1;Parent=Phyra84925;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 52721 53251 . + . ID=Phyra84927;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000005;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 52721 53251 . + . ID=Phyra84927;Parent=Phyra84927;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 52721 53251 . + 0 ID=Phyra84927;Parent=Phyra84927;rank=1 scaffold_131 . exon 52721 53251 . + . ID=Phyra84927.1;Parent=Phyra84927;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 54844 56598 . + . ID=Phyra84928;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000006;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 54844 56598 . + . ID=Phyra84928;Parent=Phyra84928;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 54844 56598 . + 0 ID=Phyra84928;Parent=Phyra84928;rank=1 scaffold_131 . exon 54844 56598 . + . ID=Phyra84928.1;Parent=Phyra84928;constitutive=1;rank=1 scaffold_131 . biological_region 55593 55596 0.999 + . logic_name=eponine scaffold_131 . biological_region 57067 57074 0.999 - . logic_name=eponine scaffold_131 . biological_region 59965 59970 0.999 + . logic_name=eponine scaffold_131 ensembl protein_coding_gene 60281 60678 . + . ID=Phyra41190;biotype=protein_coding;external_name=gwEuk.131.11.1;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 60281 60678 . + . ID=Phyra41190;Parent=Phyra41190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 60281 60499 . + 0 ID=Phyra41190;Parent=Phyra41190;rank=1 scaffold_131 . exon 60281 60499 . + . ID=Phyra41190.1;Parent=Phyra41190;constitutive=1;rank=1 scaffold_131 . CDS 60583 60678 . + 0 ID=Phyra41190;Parent=Phyra41190;rank=2 scaffold_131 . exon 60583 60678 . + . ID=Phyra41190.2;Parent=Phyra41190;constitutive=1;rank=2 scaffold_131 ensembl protein_coding_gene 59003 59853 . - . ID=Phyra72285;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_131000001;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 59003 59853 . - . ID=Phyra72285;Parent=Phyra72285;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 59003 59692 . - 0 ID=Phyra72285;Parent=Phyra72285;rank=2 scaffold_131 . exon 59003 59692 . - . ID=Phyra72285.2;Parent=Phyra72285;constitutive=1;rank=2 scaffold_131 . CDS 59752 59853 . - 0 ID=Phyra72285;Parent=Phyra72285;rank=1 scaffold_131 . exon 59752 59853 . - . ID=Phyra72285.1;Parent=Phyra72285;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 56986 58553 . + . ID=Phyra84929;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000007;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 56986 58553 . + . ID=Phyra84929;Parent=Phyra84929;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 56986 57529 . + 0 ID=Phyra84929;Parent=Phyra84929;rank=1 scaffold_131 . exon 56986 57529 . + . ID=Phyra84929.1;Parent=Phyra84929;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_131 . CDS 57599 57674 . + 0 ID=Phyra84929;Parent=Phyra84929;rank=2 scaffold_131 . exon 57599 57674 . + . ID=Phyra84929.2;Parent=Phyra84929;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_131 . CDS 57827 58199 . + 0 ID=Phyra84929;Parent=Phyra84929;rank=3 scaffold_131 . exon 57827 58199 . + . ID=Phyra84929.3;Parent=Phyra84929;constitutive=1;ensembl_phase=2;rank=3 scaffold_131 . CDS 58259 58302 . + 0 ID=Phyra84929;Parent=Phyra84929;rank=4 scaffold_131 . exon 58259 58302 . + . ID=Phyra84929.4;Parent=Phyra84929;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_131 . CDS 58388 58553 . + 0 ID=Phyra84929;Parent=Phyra84929;rank=5 scaffold_131 . exon 58388 58553 . + . ID=Phyra84929.5;Parent=Phyra84929;constitutive=1;ensembl_phase=2;rank=5 scaffold_131 ensembl protein_coding_gene 62330 63700 . - . ID=Phyra84932;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000010;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 62330 63700 . - . ID=Phyra84932;Parent=Phyra84932;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 62330 63700 . - 0 ID=Phyra84932;Parent=Phyra84932;rank=1 scaffold_131 . exon 62330 63700 . - . ID=Phyra84932.1;Parent=Phyra84932;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 64044 65013 . + . ID=Phyra84933;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000011;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 64044 65013 . + . ID=Phyra84933;Parent=Phyra84933;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 64044 64092 . + 0 ID=Phyra84933;Parent=Phyra84933;rank=1 scaffold_131 . exon 64044 64092 . + . ID=Phyra84933.1;Parent=Phyra84933;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_131 . CDS 64163 65013 . + 0 ID=Phyra84933;Parent=Phyra84933;rank=2 scaffold_131 . exon 64163 65013 . + . ID=Phyra84933.2;Parent=Phyra84933;constitutive=1;ensembl_phase=1;rank=2 scaffold_131 . repeat_region 70013 70065 . ? . description=trf scaffold_131 . repeat_region 70013 70088 . ? . description=trf scaffold_131 . repeat_region 70019 70097 . ? . description=dust scaffold_131 . repeat_region 70028 70089 . ? . description=trf scaffold_131 . repeat_region 70034 70079 . ? . description=trf scaffold_131 ensembl protein_coding_gene 67136 67849 . - . ID=Phyra84934;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000012;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 67136 67849 . - . ID=Phyra84934;Parent=Phyra84934;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 67136 67144 . - 0 ID=Phyra84934;Parent=Phyra84934;rank=3 scaffold_131 . exon 67136 67144 . - . ID=Phyra84934.3;Parent=Phyra84934;constitutive=1;rank=3 scaffold_131 . CDS 67195 67687 . - 0 ID=Phyra84934;Parent=Phyra84934;rank=2 scaffold_131 . exon 67195 67687 . - . ID=Phyra84934.2;Parent=Phyra84934;constitutive=1;ensembl_phase=2;rank=2 scaffold_131 . CDS 67752 67849 . - 0 ID=Phyra84934;Parent=Phyra84934;rank=1 scaffold_131 . exon 67752 67849 . - . ID=Phyra84934.1;Parent=Phyra84934;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_131 ensembl protein_coding_gene 68054 70966 . + . ID=Phyra84935;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000013;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 68054 70966 . + . ID=Phyra84935;Parent=Phyra84935;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 68054 70966 . + 0 ID=Phyra84935;Parent=Phyra84935;rank=1 scaffold_131 . exon 68054 70966 . + . ID=Phyra84935.1;Parent=Phyra84935;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 71229 73058 . - . ID=Phyra84936;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000014;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 71229 73058 . - . ID=Phyra84936;Parent=Phyra84936;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 71229 73058 . - 0 ID=Phyra84936;Parent=Phyra84936;rank=1 scaffold_131 . exon 71229 73058 . - . ID=Phyra84936.1;Parent=Phyra84936;constitutive=1;rank=1 scaffold_131 . biological_region 73994 73995 0.999 - . logic_name=eponine scaffold_131 . biological_region 74963 74964 0.999 - . logic_name=eponine scaffold_131 . biological_region 75018 75023 0.999 + . logic_name=eponine scaffold_131 . biological_region 75090 75096 0.999 - . logic_name=eponine scaffold_131 . biological_region 75120 75123 0.999 - . logic_name=eponine scaffold_131 . biological_region 75174 75180 0.999 + . logic_name=eponine scaffold_131 . biological_region 78166 78167 0.999 + . logic_name=eponine scaffold_131 . biological_region 78173 78177 0.999 - . logic_name=eponine scaffold_131 . biological_region 78233 78234 0.999 + . logic_name=eponine scaffold_131 . biological_region 78321 78322 0.999 - . logic_name=eponine scaffold_131 . biological_region 79529 79535 0.999 - . logic_name=eponine scaffold_131 . biological_region 79552 79553 0.999 + . logic_name=eponine scaffold_131 . biological_region 79554 79558 0.999 - . logic_name=eponine scaffold_131 . biological_region 80808 80808 0.999 + . logic_name=eponine scaffold_131 . biological_region 80899 80905 0.999 - . logic_name=eponine scaffold_131 . biological_region 81520 81521 0.999 - . logic_name=eponine scaffold_131 . biological_region 81896 81896 0.999 + . logic_name=eponine scaffold_131 ensembl protein_coding_gene 74498 75917 . - . ID=Phyra84937;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000015;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 74498 75917 . - . ID=Phyra84937;Parent=Phyra84937;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 74498 74719 . - 0 ID=Phyra84937;Parent=Phyra84937;rank=4 scaffold_131 . exon 74498 74719 . - . ID=Phyra84937.4;Parent=Phyra84937;constitutive=1;rank=4 scaffold_131 . CDS 74797 75138 . - 0 ID=Phyra84937;Parent=Phyra84937;rank=3 scaffold_131 . exon 74797 75138 . - . ID=Phyra84937.3;Parent=Phyra84937;constitutive=1;rank=3 scaffold_131 . CDS 75266 75317 . - 0 ID=Phyra84937;Parent=Phyra84937;rank=2 scaffold_131 . exon 75266 75317 . - . ID=Phyra84937.2;Parent=Phyra84937;constitutive=1;ensembl_phase=2;rank=2 scaffold_131 . CDS 75424 75917 . - 0 ID=Phyra84937;Parent=Phyra84937;rank=1 scaffold_131 . exon 75424 75917 . - . ID=Phyra84937.1;Parent=Phyra84937;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_131 ensembl protein_coding_gene 76205 76896 . + . ID=Phyra84938;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000016;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 76205 76896 . + . ID=Phyra84938;Parent=Phyra84938;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 76205 76447 . + 0 ID=Phyra84938;Parent=Phyra84938;rank=1 scaffold_131 . exon 76205 76447 . + . ID=Phyra84938.1;Parent=Phyra84938;constitutive=1;rank=1 scaffold_131 . CDS 76504 76896 . + 0 ID=Phyra84938;Parent=Phyra84938;rank=2 scaffold_131 . exon 76504 76896 . + . ID=Phyra84938.2;Parent=Phyra84938;constitutive=1;rank=2 scaffold_131 ensembl protein_coding_gene 77090 77824 . + . ID=Phyra84939;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000017;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 77090 77824 . + . ID=Phyra84939;Parent=Phyra84939;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 77090 77824 . + 0 ID=Phyra84939;Parent=Phyra84939;rank=1 scaffold_131 . exon 77090 77824 . + . ID=Phyra84939.1;Parent=Phyra84939;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 78110 79434 . - . ID=Phyra84940;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000018;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 78110 79434 . - . ID=Phyra84940;Parent=Phyra84940;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 78110 79231 . - 0 ID=Phyra84940;Parent=Phyra84940;rank=2 scaffold_131 . exon 78110 79231 . - . ID=Phyra84940.2;Parent=Phyra84940;constitutive=1;rank=2 scaffold_131 . CDS 79294 79434 . - 0 ID=Phyra84940;Parent=Phyra84940;rank=1 scaffold_131 . exon 79294 79434 . - . ID=Phyra84940.1;Parent=Phyra84940;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 81117 82385 . - . ID=Phyra84941;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000019;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 81117 82385 . - . ID=Phyra84941;Parent=Phyra84941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 81117 82385 . - 0 ID=Phyra84941;Parent=Phyra84941;rank=1 scaffold_131 . exon 81117 82385 . - . ID=Phyra84941.1;Parent=Phyra84941;constitutive=1;rank=1 scaffold_131 . repeat_region 87277 87284 . ? . description=dust scaffold_131 ensembl protein_coding_gene 91866 92762 . + . ID=Phyra41200;biotype=protein_coding;external_name=gwEuk.131.21.1;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 91866 92762 . + . ID=Phyra41200;Parent=Phyra41200;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 91866 92762 . + 0 ID=Phyra41200;Parent=Phyra41200;rank=1 scaffold_131 . exon 91866 92762 . + . ID=Phyra41200.1;Parent=Phyra41200;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 88035 89178 . - . ID=Phyra72286;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_131000002;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 88035 89178 . - . ID=Phyra72286;Parent=Phyra72286;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 88035 88728 . - 0 ID=Phyra72286;Parent=Phyra72286;rank=3 scaffold_131 . exon 88035 88728 . - . ID=Phyra72286.3;Parent=Phyra72286;constitutive=1;ensembl_phase=2;rank=3 scaffold_131 . CDS 88812 88896 . - 0 ID=Phyra72286;Parent=Phyra72286;rank=2 scaffold_131 . exon 88812 88896 . - . ID=Phyra72286.2;Parent=Phyra72286;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_131 . CDS 88986 89178 . - 0 ID=Phyra72286;Parent=Phyra72286;rank=1 scaffold_131 . exon 88986 89178 . - . ID=Phyra72286.1;Parent=Phyra72286;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_131 ensembl protein_coding_gene 84109 86909 . - . ID=Phyra84942;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000020;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 84109 86909 . - . ID=Phyra84942;Parent=Phyra84942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 84109 84152 . - 0 ID=Phyra84942;Parent=Phyra84942;rank=4 scaffold_131 . exon 84109 84152 . - . ID=Phyra84942.4;Parent=Phyra84942;constitutive=1;ensembl_phase=1;rank=4 scaffold_131 . CDS 84263 84876 . - 0 ID=Phyra84942;Parent=Phyra84942;rank=3 scaffold_131 . exon 84263 84876 . - . ID=Phyra84942.3;Parent=Phyra84942;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_131 . CDS 84949 85195 . - 0 ID=Phyra84942;Parent=Phyra84942;rank=2 scaffold_131 . exon 84949 85195 . - . ID=Phyra84942.2;Parent=Phyra84942;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_131 . CDS 85424 86909 . - 0 ID=Phyra84942;Parent=Phyra84942;rank=1 scaffold_131 . exon 85424 86909 . - . ID=Phyra84942.1;Parent=Phyra84942;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_131 . biological_region 96105 96108 0.999 + . logic_name=eponine scaffold_131 . repeat_region 97154 97235 . ? . description=trf scaffold_131 . biological_region 100691 100691 0.999 - . logic_name=eponine scaffold_131 ensembl protein_coding_gene 93337 94239 . - . ID=Phyra72288;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_131000004;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 93337 94239 . - . ID=Phyra72288;Parent=Phyra72288;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 93337 94239 . - 0 ID=Phyra72288;Parent=Phyra72288;rank=1 scaffold_131 . exon 93337 94239 . - . ID=Phyra72288.1;Parent=Phyra72288;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 95791 96588 . + . ID=Phyra84947;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000025;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 95791 96588 . + . ID=Phyra84947;Parent=Phyra84947;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 95791 96588 . + 0 ID=Phyra84947;Parent=Phyra84947;rank=1 scaffold_131 . exon 95791 96588 . + . ID=Phyra84947.1;Parent=Phyra84947;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 100435 101100 . - . ID=Phyra84948;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_131000026;logic_name=jgi_phyra1 scaffold_131 ensembl transcript 100435 101100 . - . ID=Phyra84948;Parent=Phyra84948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_131 . CDS 100435 101100 . - 0 ID=Phyra84948;Parent=Phyra84948;rank=1 scaffold_131 . exon 100435 101100 . - . ID=Phyra84948.1;Parent=Phyra84948;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_128 1 107829 scaffold_128 . repeat_region 2400 2410 . ? . description=dust scaffold_128 ensembl protein_coding_gene 67 1476 . - . ID=Phyra84858;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000001;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 67 1476 . - . ID=Phyra84858;Parent=Phyra84858;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 67 654 . - 0 ID=Phyra84858;Parent=Phyra84858;rank=2 scaffold_128 . exon 67 654 . - . ID=Phyra84858.2;Parent=Phyra84858;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_128 . CDS 887 1476 . - 0 ID=Phyra84858;Parent=Phyra84858;rank=1 scaffold_128 . exon 887 1476 . - . ID=Phyra84858.1;Parent=Phyra84858;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_128 ensembl protein_coding_gene 3814 4965 . - . ID=Phyra84859;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000002;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 3814 4965 . - . ID=Phyra84859;Parent=Phyra84859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 3814 4965 . - 0 ID=Phyra84859;Parent=Phyra84859;rank=1 scaffold_128 . exon 3814 4965 . - . ID=Phyra84859.1;Parent=Phyra84859;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 5506 7025 . + . ID=Phyra84860;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000003;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 5506 7025 . + . ID=Phyra84860;Parent=Phyra84860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 5506 5669 . + 0 ID=Phyra84860;Parent=Phyra84860;rank=1 scaffold_128 . exon 5506 5669 . + . ID=Phyra84860.1;Parent=Phyra84860;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_128 . CDS 5740 6361 . + 0 ID=Phyra84860;Parent=Phyra84860;rank=2 scaffold_128 . exon 5740 6361 . + . ID=Phyra84860.2;Parent=Phyra84860;constitutive=1;ensembl_phase=2;rank=2 scaffold_128 . CDS 6438 6588 . + 0 ID=Phyra84860;Parent=Phyra84860;rank=3 scaffold_128 . exon 6438 6588 . + . ID=Phyra84860.3;Parent=Phyra84860;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_128 . CDS 6655 7025 . + 0 ID=Phyra84860;Parent=Phyra84860;rank=4 scaffold_128 . exon 6655 7025 . + . ID=Phyra84860.4;Parent=Phyra84860;constitutive=1;ensembl_phase=1;rank=4 scaffold_128 ensembl protein_coding_gene 8265 9281 . + . ID=Phyra84861;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000004;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 8265 9281 . + . ID=Phyra84861;Parent=Phyra84861;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 8265 8442 . + 0 ID=Phyra84861;Parent=Phyra84861;rank=1 scaffold_128 . exon 8265 8442 . + . ID=Phyra84861.1;Parent=Phyra84861;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_128 . CDS 8509 8659 . + 0 ID=Phyra84861;Parent=Phyra84861;rank=2 scaffold_128 . exon 8509 8659 . + . ID=Phyra84861.2;Parent=Phyra84861;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_128 . CDS 8728 9115 . + 0 ID=Phyra84861;Parent=Phyra84861;rank=3 scaffold_128 . exon 8728 9115 . + . ID=Phyra84861.3;Parent=Phyra84861;constitutive=1;ensembl_phase=2;rank=3 scaffold_128 . CDS 9195 9281 . + 0 ID=Phyra84861;Parent=Phyra84861;rank=4 scaffold_128 . exon 9195 9281 . + . ID=Phyra84861.4;Parent=Phyra84861;constitutive=1;rank=4 scaffold_128 ensembl protein_coding_gene 9558 10226 . + . ID=Phyra84862;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000005;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 9558 10226 . + . ID=Phyra84862;Parent=Phyra84862;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 9558 10226 . + 0 ID=Phyra84862;Parent=Phyra84862;rank=1 scaffold_128 . exon 9558 10226 . + . ID=Phyra84862.1;Parent=Phyra84862;constitutive=1;rank=1 scaffold_128 . biological_region 11571 11574 0.999 + . logic_name=eponine scaffold_128 . biological_region 11583 11586 0.999 + . logic_name=eponine scaffold_128 . biological_region 15210 15213 0.999 + . logic_name=eponine scaffold_128 ensembl protein_coding_gene 10501 11841 . - . ID=Phyra84863;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000006;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 10501 11841 . - . ID=Phyra84863;Parent=Phyra84863;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 10501 11841 . - 0 ID=Phyra84863;Parent=Phyra84863;rank=1 scaffold_128 . exon 10501 11841 . - . ID=Phyra84863.1;Parent=Phyra84863;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 12674 13921 . + . ID=Phyra84864;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000007;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 12674 13921 . + . ID=Phyra84864;Parent=Phyra84864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 12674 13128 . + 0 ID=Phyra84864;Parent=Phyra84864;rank=1 scaffold_128 . exon 12674 13128 . + . ID=Phyra84864.1;Parent=Phyra84864;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_128 . CDS 13269 13315 . + 0 ID=Phyra84864;Parent=Phyra84864;rank=2 scaffold_128 . exon 13269 13315 . + . ID=Phyra84864.2;Parent=Phyra84864;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_128 . CDS 13350 13921 . + 0 ID=Phyra84864;Parent=Phyra84864;rank=3 scaffold_128 . exon 13350 13921 . + . ID=Phyra84864.3;Parent=Phyra84864;constitutive=1;ensembl_phase=1;rank=3 scaffold_128 ensembl protein_coding_gene 14096 19645 . + . ID=Phyra84865;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000008;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 14096 19645 . + . ID=Phyra84865;Parent=Phyra84865;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 14096 14962 . + 0 ID=Phyra84865;Parent=Phyra84865;rank=1 scaffold_128 . exon 14096 14962 . + . ID=Phyra84865.1;Parent=Phyra84865;constitutive=1;rank=1 scaffold_128 . CDS 15039 15641 . + 0 ID=Phyra84865;Parent=Phyra84865;rank=2 scaffold_128 . exon 15039 15641 . + . ID=Phyra84865.2;Parent=Phyra84865;constitutive=1;rank=2 scaffold_128 . CDS 15705 15778 . + 0 ID=Phyra84865;Parent=Phyra84865;rank=3 scaffold_128 . exon 15705 15778 . + . ID=Phyra84865.3;Parent=Phyra84865;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_128 . CDS 15851 16385 . + 0 ID=Phyra84865;Parent=Phyra84865;rank=4 scaffold_128 . exon 15851 16385 . + . ID=Phyra84865.4;Parent=Phyra84865;constitutive=1;ensembl_phase=2;rank=4 scaffold_128 . CDS 16539 17198 . + 0 ID=Phyra84865;Parent=Phyra84865;rank=5 scaffold_128 . exon 16539 17198 . + . ID=Phyra84865.5;Parent=Phyra84865;constitutive=1;rank=5 scaffold_128 . CDS 17258 17323 . + 0 ID=Phyra84865;Parent=Phyra84865;rank=6 scaffold_128 . exon 17258 17323 . + . ID=Phyra84865.6;Parent=Phyra84865;constitutive=1;rank=6 scaffold_128 . CDS 17378 17434 . + 0 ID=Phyra84865;Parent=Phyra84865;rank=7 scaffold_128 . exon 17378 17434 . + . ID=Phyra84865.7;Parent=Phyra84865;constitutive=1;rank=7 scaffold_128 . CDS 17653 17760 . + 0 ID=Phyra84865;Parent=Phyra84865;rank=8 scaffold_128 . exon 17653 17760 . + . ID=Phyra84865.8;Parent=Phyra84865;constitutive=1;rank=8 scaffold_128 . CDS 18203 18460 . + 0 ID=Phyra84865;Parent=Phyra84865;rank=9 scaffold_128 . exon 18203 18460 . + . ID=Phyra84865.9;Parent=Phyra84865;constitutive=1;rank=9 scaffold_128 . CDS 18636 19616 . + 0 ID=Phyra84865;Parent=Phyra84865;rank=10 scaffold_128 . exon 18636 19616 . + . ID=Phyra84865.10;Parent=Phyra84865;constitutive=1;rank=10 scaffold_128 . CDS 19640 19645 . + 0 ID=Phyra84865;Parent=Phyra84865;rank=11 scaffold_128 . repeat_region 27559 27603 . ? . description=trf scaffold_128 . exon 19640 19645 . + . ID=Phyra84865.11;Parent=Phyra84865;constitutive=1;rank=11 scaffold_128 ensembl protein_coding_gene 19816 21381 . - . ID=Phyra84866;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000009;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 19816 21381 . - . ID=Phyra84866;Parent=Phyra84866;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 19816 21381 . - 0 ID=Phyra84866;Parent=Phyra84866;rank=1 scaffold_128 . exon 19816 21381 . - . ID=Phyra84866.1;Parent=Phyra84866;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 22719 23531 . - . ID=Phyra84867;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000010;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 22719 23531 . - . ID=Phyra84867;Parent=Phyra84867;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 22719 23531 . - 0 ID=Phyra84867;Parent=Phyra84867;rank=1 scaffold_128 . exon 22719 23531 . - . ID=Phyra84867.1;Parent=Phyra84867;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 24385 26899 . - . ID=Phyra84868;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000011;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 24385 26899 . - . ID=Phyra84868;Parent=Phyra84868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 24385 24735 . - 0 ID=Phyra84868;Parent=Phyra84868;rank=5 scaffold_128 . exon 24385 24735 . - . ID=Phyra84868.5;Parent=Phyra84868;constitutive=1;rank=5 scaffold_128 . CDS 24852 24966 . - 0 ID=Phyra84868;Parent=Phyra84868;rank=4 scaffold_128 . exon 24852 24966 . - . ID=Phyra84868.4;Parent=Phyra84868;constitutive=1;ensembl_phase=2;rank=4 scaffold_128 . CDS 25041 25111 . - 0 ID=Phyra84868;Parent=Phyra84868;rank=3 scaffold_128 . exon 25041 25111 . - . ID=Phyra84868.3;Parent=Phyra84868;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_128 . CDS 25184 26336 . - 0 ID=Phyra84868;Parent=Phyra84868;rank=2 scaffold_128 . exon 25184 26336 . - . ID=Phyra84868.2;Parent=Phyra84868;constitutive=1;ensembl_phase=2;rank=2 scaffold_128 . CDS 26409 26899 . - 0 ID=Phyra84868;Parent=Phyra84868;rank=1 scaffold_128 . exon 26409 26899 . - . ID=Phyra84868.1;Parent=Phyra84868;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_128 ensembl protein_coding_gene 27146 29034 . + . ID=Phyra84869;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000012;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 27146 29034 . + . ID=Phyra84869;Parent=Phyra84869;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 27146 28144 . + 0 ID=Phyra84869;Parent=Phyra84869;rank=1 scaffold_128 . exon 27146 28144 . + . ID=Phyra84869.1;Parent=Phyra84869;constitutive=1;rank=1 scaffold_128 . CDS 28216 28535 . + 0 ID=Phyra84869;Parent=Phyra84869;rank=2 scaffold_128 . exon 28216 28535 . + . ID=Phyra84869.2;Parent=Phyra84869;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_128 . CDS 28616 28699 . + 0 ID=Phyra84869;Parent=Phyra84869;rank=3 scaffold_128 . exon 28616 28699 . + . ID=Phyra84869.3;Parent=Phyra84869;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_128 . CDS 28779 29034 . + 0 ID=Phyra84869;Parent=Phyra84869;rank=4 scaffold_128 . exon 28779 29034 . + . ID=Phyra84869.4;Parent=Phyra84869;constitutive=1;ensembl_phase=2;rank=4 scaffold_128 . biological_region 29436 29438 0.999 + . logic_name=eponine scaffold_128 . biological_region 29851 29852 0.999 + . logic_name=eponine scaffold_128 . biological_region 31267 31268 0.999 + . logic_name=eponine scaffold_128 . biological_region 38938 38938 0.999 + . logic_name=eponine scaffold_128 ensembl protein_coding_gene 29826 30845 . + . ID=Phyra84870;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000013;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 29826 30845 . + . ID=Phyra84870;Parent=Phyra84870;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 29826 30845 . + 0 ID=Phyra84870;Parent=Phyra84870;rank=1 scaffold_128 . exon 29826 30845 . + . ID=Phyra84870.1;Parent=Phyra84870;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 35630 37679 . - . ID=Phyra84871;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000014;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 35630 37679 . - . ID=Phyra84871;Parent=Phyra84871;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 35630 36085 . - 0 ID=Phyra84871;Parent=Phyra84871;rank=6 scaffold_128 . exon 35630 36085 . - . ID=Phyra84871.6;Parent=Phyra84871;constitutive=1;rank=6 scaffold_128 . CDS 36138 36180 . - 0 ID=Phyra84871;Parent=Phyra84871;rank=5 scaffold_128 . exon 36138 36180 . - . ID=Phyra84871.5;Parent=Phyra84871;constitutive=1;ensembl_phase=2;rank=5 scaffold_128 . CDS 36216 36332 . - 0 ID=Phyra84871;Parent=Phyra84871;rank=4 scaffold_128 . exon 36216 36332 . - . ID=Phyra84871.4;Parent=Phyra84871;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_128 . CDS 36400 37282 . - 0 ID=Phyra84871;Parent=Phyra84871;rank=3 scaffold_128 . exon 36400 37282 . - . ID=Phyra84871.3;Parent=Phyra84871;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_128 . CDS 37358 37464 . - 0 ID=Phyra84871;Parent=Phyra84871;rank=2 scaffold_128 . exon 37358 37464 . - . ID=Phyra84871.2;Parent=Phyra84871;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_128 . CDS 37522 37679 . - 0 ID=Phyra84871;Parent=Phyra84871;rank=1 scaffold_128 . exon 37522 37679 . - . ID=Phyra84871.1;Parent=Phyra84871;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_128 ensembl protein_coding_gene 37988 39064 . + . ID=Phyra84872;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000015;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 37988 39064 . + . ID=Phyra84872;Parent=Phyra84872;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 37988 38078 . + 0 ID=Phyra84872;Parent=Phyra84872;rank=1 scaffold_128 . exon 37988 38078 . + . ID=Phyra84872.1;Parent=Phyra84872;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_128 . CDS 38190 39064 . + 0 ID=Phyra84872;Parent=Phyra84872;rank=2 scaffold_128 . exon 38190 39064 . + . ID=Phyra84872.2;Parent=Phyra84872;constitutive=1;ensembl_phase=1;rank=2 scaffold_128 . repeat_region 45112 45244 . + . description=(CTG)n scaffold_128 . repeat_region 45200 45240 . ? . description=trf scaffold_128 ensembl protein_coding_gene 48172 50205 . + . ID=Phyra40872;biotype=protein_coding;external_name=gwEuk.128.14.1;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 48172 50205 . + . ID=Phyra40872;Parent=Phyra40872;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 48172 48543 . + 0 ID=Phyra40872;Parent=Phyra40872;rank=1 scaffold_128 . exon 48172 48543 . + . ID=Phyra40872.1;Parent=Phyra40872;constitutive=1;rank=1 scaffold_128 . CDS 48610 50205 . + 0 ID=Phyra40872;Parent=Phyra40872;rank=2 scaffold_128 . exon 48610 50205 . + . ID=Phyra40872.2;Parent=Phyra40872;constitutive=1;rank=2 scaffold_128 ensembl protein_coding_gene 40105 41672 . + . ID=Phyra84873;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000016;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 40105 41672 . + . ID=Phyra84873;Parent=Phyra84873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 40105 40196 . + 0 ID=Phyra84873;Parent=Phyra84873;rank=1 scaffold_128 . exon 40105 40196 . + . ID=Phyra84873.1;Parent=Phyra84873;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_128 . CDS 40267 40519 . + 0 ID=Phyra84873;Parent=Phyra84873;rank=2 scaffold_128 . exon 40267 40519 . + . ID=Phyra84873.2;Parent=Phyra84873;constitutive=1;ensembl_phase=2;rank=2 scaffold_128 . CDS 40587 41672 . + 0 ID=Phyra84873;Parent=Phyra84873;rank=3 scaffold_128 . exon 40587 41672 . + . ID=Phyra84873.3;Parent=Phyra84873;constitutive=1;rank=3 scaffold_128 ensembl protein_coding_gene 42461 43135 . + . ID=Phyra84874;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000017;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 42461 43135 . + . ID=Phyra84874;Parent=Phyra84874;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 42461 43135 . + 0 ID=Phyra84874;Parent=Phyra84874;rank=1 scaffold_128 . exon 42461 43135 . + . ID=Phyra84874.1;Parent=Phyra84874;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 43345 43977 . + . ID=Phyra84875;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000018;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 43345 43977 . + . ID=Phyra84875;Parent=Phyra84875;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 43345 43977 . + 0 ID=Phyra84875;Parent=Phyra84875;rank=1 scaffold_128 . exon 43345 43977 . + . ID=Phyra84875.1;Parent=Phyra84875;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 44163 46808 . - . ID=Phyra84876;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000019;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 44163 46808 . - . ID=Phyra84876;Parent=Phyra84876;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 44163 46808 . - 0 ID=Phyra84876;Parent=Phyra84876;rank=1 scaffold_128 . exon 44163 46808 . - . ID=Phyra84876.1;Parent=Phyra84876;constitutive=1;rank=1 scaffold_128 . repeat_region 56322 56329 . ? . description=dust scaffold_128 ensembl protein_coding_gene 52264 53235 . + . ID=Phyra84879;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000022;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 52264 53235 . + . ID=Phyra84879;Parent=Phyra84879;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 52264 52966 . + 0 ID=Phyra84879;Parent=Phyra84879;rank=1 scaffold_128 . exon 52264 52966 . + . ID=Phyra84879.1;Parent=Phyra84879;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_128 . CDS 53030 53235 . + 0 ID=Phyra84879;Parent=Phyra84879;rank=2 scaffold_128 . exon 53030 53235 . + . ID=Phyra84879.2;Parent=Phyra84879;constitutive=1;ensembl_phase=1;rank=2 scaffold_128 ensembl protein_coding_gene 53539 58971 . + . ID=Phyra84880;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000023;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 53539 58971 . + . ID=Phyra84880;Parent=Phyra84880;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 53539 54300 . + 0 ID=Phyra84880;Parent=Phyra84880;rank=1 scaffold_128 . exon 53539 54300 . + . ID=Phyra84880.1;Parent=Phyra84880;constitutive=1;rank=1 scaffold_128 . CDS 54571 54747 . + 0 ID=Phyra84880;Parent=Phyra84880;rank=2 scaffold_128 . exon 54571 54747 . + . ID=Phyra84880.2;Parent=Phyra84880;constitutive=1;rank=2 scaffold_128 . CDS 54826 57136 . + 0 ID=Phyra84880;Parent=Phyra84880;rank=3 scaffold_128 . exon 54826 57136 . + . ID=Phyra84880.3;Parent=Phyra84880;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_128 . CDS 57365 57751 . + 0 ID=Phyra84880;Parent=Phyra84880;rank=4 scaffold_128 . exon 57365 57751 . + . ID=Phyra84880.4;Parent=Phyra84880;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_128 . CDS 58115 58971 . + 0 ID=Phyra84880;Parent=Phyra84880;rank=5 scaffold_128 . exon 58115 58971 . + . ID=Phyra84880.5;Parent=Phyra84880;constitutive=1;ensembl_phase=1;rank=5 scaffold_128 ensembl protein_coding_gene 50633 51307 . - . ID=Phyra96979;biotype=protein_coding;external_name=C_scaffold_128000010;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 50633 51307 . - . ID=Phyra96979;Parent=Phyra96979;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 50633 51307 . - 0 ID=Phyra96979;Parent=Phyra96979;rank=1 scaffold_128 . exon 50633 51307 . - . ID=Phyra96979.1;Parent=Phyra96979;constitutive=1;rank=1 scaffold_128 . biological_region 59352 59353 0.999 + . logic_name=eponine scaffold_128 . biological_region 60240 60247 0.999 + . logic_name=eponine scaffold_128 . biological_region 60849 60856 0.999 + . logic_name=eponine scaffold_128 . biological_region 68455 68455 0.999 + . logic_name=eponine scaffold_128 ensembl protein_coding_gene 59133 60497 . - . ID=Phyra84881;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000024;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 59133 60497 . - . ID=Phyra84881;Parent=Phyra84881;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 59133 60497 . - 0 ID=Phyra84881;Parent=Phyra84881;rank=1 scaffold_128 . exon 59133 60497 . - . ID=Phyra84881.1;Parent=Phyra84881;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 60710 61748 . - . ID=Phyra84882;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000025;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 60710 61748 . - . ID=Phyra84882;Parent=Phyra84882;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 60710 61058 . - 0 ID=Phyra84882;Parent=Phyra84882;rank=4 scaffold_128 . exon 60710 61058 . - . ID=Phyra84882.4;Parent=Phyra84882;constitutive=1;ensembl_phase=2;rank=4 scaffold_128 . CDS 61120 61232 . - 0 ID=Phyra84882;Parent=Phyra84882;rank=3 scaffold_128 . exon 61120 61232 . - . ID=Phyra84882.3;Parent=Phyra84882;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_128 . CDS 61301 61444 . - 0 ID=Phyra84882;Parent=Phyra84882;rank=2 scaffold_128 . exon 61301 61444 . - . ID=Phyra84882.2;Parent=Phyra84882;constitutive=1;rank=2 scaffold_128 . CDS 61530 61748 . - 0 ID=Phyra84882;Parent=Phyra84882;rank=1 scaffold_128 . exon 61530 61748 . - . ID=Phyra84882.1;Parent=Phyra84882;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 62893 64488 . + . ID=Phyra84883;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000026;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 62893 64488 . + . ID=Phyra84883;Parent=Phyra84883;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 62893 64488 . + 0 ID=Phyra84883;Parent=Phyra84883;rank=1 scaffold_128 . exon 62893 64488 . + . ID=Phyra84883.1;Parent=Phyra84883;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 65092 66576 . + . ID=Phyra84884;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000027;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 65092 66576 . + . ID=Phyra84884;Parent=Phyra84884;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 65092 66576 . + 0 ID=Phyra84884;Parent=Phyra84884;rank=1 scaffold_128 . exon 65092 66576 . + . ID=Phyra84884.1;Parent=Phyra84884;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 68083 69675 . + . ID=Phyra84885;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000028;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 68083 69675 . + . ID=Phyra84885;Parent=Phyra84885;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 68083 69675 . + 0 ID=Phyra84885;Parent=Phyra84885;rank=1 scaffold_128 . exon 68083 69675 . + . ID=Phyra84885.1;Parent=Phyra84885;constitutive=1;rank=1 scaffold_128 . repeat_region 72746 72753 . ? . description=dust scaffold_128 . repeat_region 73809 73817 . ? . description=dust scaffold_128 . repeat_region 77172 85873 . ? . description=dust scaffold_128 ensembl protein_coding_gene 69827 70288 . - . ID=Phyra84886;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000029;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 69827 70288 . - . ID=Phyra84886;Parent=Phyra84886;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 69827 70288 . - 0 ID=Phyra84886;Parent=Phyra84886;rank=1 scaffold_128 . exon 69827 70288 . - . ID=Phyra84886.1;Parent=Phyra84886;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 70736 72211 . - . ID=Phyra84887;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000030;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 70736 72211 . - . ID=Phyra84887;Parent=Phyra84887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 70736 72211 . - 0 ID=Phyra84887;Parent=Phyra84887;rank=1 scaffold_128 . exon 70736 72211 . - . ID=Phyra84887.1;Parent=Phyra84887;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 74352 75821 . - . ID=Phyra84888;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000031;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 74352 75821 . - . ID=Phyra84888;Parent=Phyra84888;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 74352 75821 . - 0 ID=Phyra84888;Parent=Phyra84888;rank=1 scaffold_128 . exon 74352 75821 . - . ID=Phyra84888.1;Parent=Phyra84888;constitutive=1;rank=1 scaffold_128 . repeat_region 86560 86833 . - . description=GypsyPi-1c_I-int scaffold_128 . repeat_region 87151 89251 . - . description=GypsyPi-1c_I-int scaffold_128 ensembl protein_coding_gene 86791 89164 . - . ID=Phyra84889;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000032;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 86791 89164 . - . ID=Phyra84889;Parent=Phyra84889;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 86791 86797 . - 0 ID=Phyra84889;Parent=Phyra84889;rank=6 scaffold_128 . exon 86791 86797 . - . ID=Phyra84889.6;Parent=Phyra84889;constitutive=1;ensembl_phase=2;rank=6 scaffold_128 . CDS 86838 86929 . - 0 ID=Phyra84889;Parent=Phyra84889;rank=5 scaffold_128 . exon 86838 86929 . - . ID=Phyra84889.5;Parent=Phyra84889;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_128 . CDS 87191 87340 . - 0 ID=Phyra84889;Parent=Phyra84889;rank=4 scaffold_128 . exon 87191 87340 . - . ID=Phyra84889.4;Parent=Phyra84889;constitutive=1;rank=4 scaffold_128 . CDS 87696 88145 . - 0 ID=Phyra84889;Parent=Phyra84889;rank=3 scaffold_128 . exon 87696 88145 . - . ID=Phyra84889.3;Parent=Phyra84889;constitutive=1;rank=3 scaffold_128 . CDS 88439 88636 . - 0 ID=Phyra84889;Parent=Phyra84889;rank=2 scaffold_128 . CDS 88679 89164 . - 0 ID=Phyra84889;Parent=Phyra84889;rank=1 scaffold_128 . repeat_region 89252 89619 . ? . description=dust scaffold_128 . repeat_region 90851 90900 . ? . description=dust scaffold_128 . biological_region 90984 90989 0.999 - . logic_name=eponine scaffold_128 . biological_region 91023 91026 0.999 + . logic_name=eponine scaffold_128 . biological_region 91042 91042 0.999 + . logic_name=eponine scaffold_128 . biological_region 91060 91064 0.999 + . logic_name=eponine scaffold_128 . biological_region 91086 91091 0.999 - . logic_name=eponine scaffold_128 . biological_region 91139 91142 0.999 - . logic_name=eponine scaffold_128 . biological_region 92653 92656 0.999 - . logic_name=eponine scaffold_128 . repeat_region 94975 94991 . ? . description=dust scaffold_128 . biological_region 96806 96806 0.999 + . logic_name=eponine scaffold_128 . repeat_region 96872 97285 . ? . description=dust scaffold_128 . biological_region 97910 97914 0.999 + . logic_name=eponine scaffold_128 . exon 88439 88636 . - . ID=Phyra84889.2;Parent=Phyra84889;constitutive=1;rank=2 scaffold_128 . exon 88679 89164 . - . ID=Phyra84889.1;Parent=Phyra84889;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 95602 96699 . - . ID=Phyra84890;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000033;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 95602 96699 . - . ID=Phyra84890;Parent=Phyra84890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 95602 95637 . - 0 ID=Phyra84890;Parent=Phyra84890;rank=3 scaffold_128 . exon 95602 95637 . - . ID=Phyra84890.3;Parent=Phyra84890;constitutive=1;rank=3 scaffold_128 . CDS 95712 95715 . - 0 ID=Phyra84890;Parent=Phyra84890;rank=2 scaffold_128 . exon 95712 95715 . - . ID=Phyra84890.2;Parent=Phyra84890;constitutive=1;ensembl_phase=2;rank=2 scaffold_128 . CDS 95753 96699 . - 0 ID=Phyra84890;Parent=Phyra84890;rank=1 scaffold_128 . exon 95753 96699 . - . ID=Phyra84890.1;Parent=Phyra84890;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_128 ensembl protein_coding_gene 97304 98905 . + . ID=Phyra84891;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000034;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 97304 98905 . + . ID=Phyra84891;Parent=Phyra84891;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 97304 98905 . + 0 ID=Phyra84891;Parent=Phyra84891;rank=1 scaffold_128 . exon 97304 98905 . + . ID=Phyra84891.1;Parent=Phyra84891;constitutive=1;rank=1 scaffold_128 . repeat_region 99303 99607 . + . description=GypsyPi-1c_I-int scaffold_128 . repeat_region 102226 102271 . ? . description=trf scaffold_128 ensembl protein_coding_gene 101324 102052 . - . ID=Phyra84892;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000035;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 101324 102052 . - . ID=Phyra84892;Parent=Phyra84892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 101324 102052 . - 0 ID=Phyra84892;Parent=Phyra84892;rank=1 scaffold_128 . exon 101324 102052 . - . ID=Phyra84892.1;Parent=Phyra84892;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 104735 106204 . - . ID=Phyra84893;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_128000036;logic_name=jgi_phyra1 scaffold_128 ensembl transcript 104735 106204 . - . ID=Phyra84893;Parent=Phyra84893;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_128 . CDS 104735 106204 . - 0 ID=Phyra84893;Parent=Phyra84893;rank=1 scaffold_128 . exon 104735 106204 . - . ID=Phyra84893.1;Parent=Phyra84893;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_127 1 109984 scaffold_127 . biological_region 6980 6984 0.999 + . logic_name=eponine scaffold_127 . repeat_region 7345 7390 . ? . description=trf scaffold_127 . biological_region 7386 7388 0.999 - . logic_name=eponine scaffold_127 . biological_region 7421 7424 0.999 - . logic_name=eponine scaffold_127 . biological_region 9972 9973 0.999 - . logic_name=eponine scaffold_127 ensembl tRNA_gene 442 514 . + . ID=EPrPRAG00000000052;biotype=tRNA;description=tRNA-Phe for anticodon AAA [Source:TRNASCAN_SE%3BAcc:tRNA-Phe];external_name=tRNA-Phe;logic_name=ncrna_eg scaffold_127 ensembl transcript 442 514 . + . ID=EPrPRAT00000000052;Parent=EPrPRAG00000000052;biotype=tRNA;logic_name=ncrna_eg scaffold_127 ensembl tRNA_gene 984 1056 . + . ID=EPrPRAG00000000205;biotype=tRNA;description=tRNA-Phe for anticodon AAA [Source:TRNASCAN_SE%3BAcc:tRNA-Phe];external_name=tRNA-Phe;logic_name=ncrna_eg scaffold_127 ensembl transcript 984 1056 . + . ID=EPrPRAT00000000205;Parent=EPrPRAG00000000205;biotype=tRNA;logic_name=ncrna_eg scaffold_127 . exon 442 514 . + . ID=EPrPRAE00000000052;Parent=EPrPRAT00000000052;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_127 . exon 984 1056 . + . ID=EPrPRAE00000000205;Parent=EPrPRAT00000000205;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_127 ensembl protein_coding_gene 1971 4146 . + . ID=Phyra84821;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000001;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 1971 4146 . + . ID=Phyra84821;Parent=Phyra84821;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 1971 2370 . + 0 ID=Phyra84821;Parent=Phyra84821;rank=1 scaffold_127 . exon 1971 2370 . + . ID=Phyra84821.1;Parent=Phyra84821;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_127 . CDS 2435 4146 . + 0 ID=Phyra84821;Parent=Phyra84821;rank=2 scaffold_127 . exon 2435 4146 . + . ID=Phyra84821.2;Parent=Phyra84821;constitutive=1;ensembl_phase=1;rank=2 scaffold_127 ensembl protein_coding_gene 8775 12926 . - . ID=Phyra84824;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000004;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 8775 12926 . - . ID=Phyra84824;Parent=Phyra84824;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 8775 12926 . - 0 ID=Phyra84824;Parent=Phyra84824;rank=1 scaffold_127 . exon 8775 12926 . - . ID=Phyra84824.1;Parent=Phyra84824;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 4240 7943 . - . ID=Phyra96954;biotype=protein_coding;external_name=C_scaffold_127000002;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 4240 7943 . - . ID=Phyra96954;Parent=Phyra96954;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 4240 4243 . - 0 ID=Phyra96954;Parent=Phyra96954;rank=6 scaffold_127 . exon 4240 4243 . - . ID=Phyra96954.6;Parent=Phyra96954;constitutive=1;ensembl_phase=2;rank=6 scaffold_127 . CDS 4448 4799 . - 0 ID=Phyra96954;Parent=Phyra96954;rank=5 scaffold_127 . exon 4448 4799 . - . ID=Phyra96954.5;Parent=Phyra96954;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_127 . CDS 4836 5887 . - 0 ID=Phyra96954;Parent=Phyra96954;rank=4 scaffold_127 . exon 4836 5887 . - . ID=Phyra96954.4;Parent=Phyra96954;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_127 . CDS 5986 6045 . - 0 ID=Phyra96954;Parent=Phyra96954;rank=3 scaffold_127 . exon 5986 6045 . - . ID=Phyra96954.3;Parent=Phyra96954;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_127 . CDS 6622 7361 . - 0 ID=Phyra96954;Parent=Phyra96954;rank=2 scaffold_127 . exon 6622 7361 . - . ID=Phyra96954.2;Parent=Phyra96954;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_127 . CDS 7389 7943 . - 0 ID=Phyra96954;Parent=Phyra96954;rank=1 scaffold_127 . exon 7389 7943 . - . ID=Phyra96954.1;Parent=Phyra96954;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 14432 14850 . - . ID=Phyra84825;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000005;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 14432 14850 . - . ID=Phyra84825;Parent=Phyra84825;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 14432 14629 . - 0 ID=Phyra84825;Parent=Phyra84825;rank=2 scaffold_127 . exon 14432 14629 . - . ID=Phyra84825.2;Parent=Phyra84825;constitutive=1;rank=2 scaffold_127 . CDS 14707 14850 . - 0 ID=Phyra84825;Parent=Phyra84825;rank=1 scaffold_127 . exon 14707 14850 . - . ID=Phyra84825.1;Parent=Phyra84825;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 18608 23035 . - . ID=Phyra96955;biotype=protein_coding;external_name=C_scaffold_127000003;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 18608 23035 . - . ID=Phyra96955;Parent=Phyra96955;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 18608 19201 . - 0 ID=Phyra96955;Parent=Phyra96955;rank=15 scaffold_127 . exon 18608 19201 . - . ID=Phyra96955.15;Parent=Phyra96955;constitutive=1;rank=15 scaffold_127 . CDS 19325 19478 . - 0 ID=Phyra96955;Parent=Phyra96955;rank=14 scaffold_127 . exon 19325 19478 . - . ID=Phyra96955.14;Parent=Phyra96955;constitutive=1;ensembl_phase=2;rank=14 scaffold_127 . CDS 19539 19653 . - 0 ID=Phyra96955;Parent=Phyra96955;rank=13 scaffold_127 . exon 19539 19653 . - . ID=Phyra96955.13;Parent=Phyra96955;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=13 scaffold_127 . CDS 19690 19897 . - 0 ID=Phyra96955;Parent=Phyra96955;rank=12 scaffold_127 . exon 19690 19897 . - . ID=Phyra96955.12;Parent=Phyra96955;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_127 . CDS 20124 20321 . - 0 ID=Phyra96955;Parent=Phyra96955;rank=11 scaffold_127 . CDS 20388 20436 . - 0 ID=Phyra96955;Parent=Phyra96955;rank=10 scaffold_127 . CDS 20658 20746 . - 0 ID=Phyra96955;Parent=Phyra96955;rank=9 scaffold_127 . CDS 20813 20895 . - 0 ID=Phyra96955;Parent=Phyra96955;rank=8 scaffold_127 . CDS 21005 21044 . - 0 ID=Phyra96955;Parent=Phyra96955;rank=7 scaffold_127 . CDS 21133 21382 . - 0 ID=Phyra96955;Parent=Phyra96955;rank=6 scaffold_127 . CDS 21444 21646 . - 0 ID=Phyra96955;Parent=Phyra96955;rank=5 scaffold_127 . CDS 21716 21790 . - 0 ID=Phyra96955;Parent=Phyra96955;rank=4 scaffold_127 . CDS 22636 22821 . - 0 ID=Phyra96955;Parent=Phyra96955;rank=3 scaffold_127 . CDS 22887 22985 . - 0 ID=Phyra96955;Parent=Phyra96955;rank=2 scaffold_127 . CDS 23018 23035 . - 0 ID=Phyra96955;Parent=Phyra96955;rank=1 scaffold_127 . biological_region 23150 23151 0.999 + . logic_name=eponine scaffold_127 . repeat_region 27307 27320 . ? . description=dust scaffold_127 ensembl protein_coding_gene 27479 28984 . - . ID=Phyra84830;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000010;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 27479 28984 . - . ID=Phyra84830;Parent=Phyra84830;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 27479 28984 . - 0 ID=Phyra84830;Parent=Phyra84830;rank=1 scaffold_127 . exon 27479 28984 . - . ID=Phyra84830.1;Parent=Phyra84830;constitutive=1;rank=1 scaffold_127 . exon 20124 20321 . - . ID=Phyra96955.11;Parent=Phyra96955;constitutive=1;rank=11 scaffold_127 . exon 20388 20436 . - . ID=Phyra96955.10;Parent=Phyra96955;constitutive=1;ensembl_phase=2;rank=10 scaffold_127 . exon 20658 20746 . - . ID=Phyra96955.9;Parent=Phyra96955;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_127 . exon 20813 20895 . - . ID=Phyra96955.8;Parent=Phyra96955;constitutive=1;ensembl_phase=1;rank=8 scaffold_127 . exon 21005 21044 . - . ID=Phyra96955.7;Parent=Phyra96955;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_127 . exon 21133 21382 . - . ID=Phyra96955.6;Parent=Phyra96955;constitutive=1;ensembl_phase=2;rank=6 scaffold_127 . exon 21444 21646 . - . ID=Phyra96955.5;Parent=Phyra96955;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_127 . exon 21716 21790 . - . ID=Phyra96955.4;Parent=Phyra96955;constitutive=1;rank=4 scaffold_127 . exon 22636 22821 . - . ID=Phyra96955.3;Parent=Phyra96955;constitutive=1;rank=3 scaffold_127 . exon 22887 22985 . - . ID=Phyra96955.2;Parent=Phyra96955;constitutive=1;rank=2 scaffold_127 . exon 23018 23035 . - . ID=Phyra96955.1;Parent=Phyra96955;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 23253 23973 . + . ID=Phyra96956;biotype=protein_coding;external_name=C_scaffold_127000004;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 23253 23973 . + . ID=Phyra96956;Parent=Phyra96956;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 23253 23664 . + 0 ID=Phyra96956;Parent=Phyra96956;rank=1 scaffold_127 . exon 23253 23664 . + . ID=Phyra96956.1;Parent=Phyra96956;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_127 . CDS 23744 23973 . + 0 ID=Phyra96956;Parent=Phyra96956;rank=2 scaffold_127 . exon 23744 23973 . + . ID=Phyra96956.2;Parent=Phyra96956;constitutive=1;ensembl_phase=1;rank=2 scaffold_127 ensembl protein_coding_gene 26022 27258 . - . ID=Phyra96957;biotype=protein_coding;external_name=C_scaffold_127000005;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 26022 27258 . - . ID=Phyra96957;Parent=Phyra96957;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 26022 26315 . - 0 ID=Phyra96957;Parent=Phyra96957;rank=4 scaffold_127 . exon 26022 26315 . - . ID=Phyra96957.4;Parent=Phyra96957;constitutive=1;rank=4 scaffold_127 . CDS 26406 26612 . - 0 ID=Phyra96957;Parent=Phyra96957;rank=3 scaffold_127 . exon 26406 26612 . - . ID=Phyra96957.3;Parent=Phyra96957;constitutive=1;rank=3 scaffold_127 . CDS 26680 26831 . - 0 ID=Phyra96957;Parent=Phyra96957;rank=2 scaffold_127 . exon 26680 26831 . - . ID=Phyra96957.2;Parent=Phyra96957;constitutive=1;ensembl_phase=1;rank=2 scaffold_127 . CDS 26868 27258 . - 0 ID=Phyra96957;Parent=Phyra96957;rank=1 scaffold_127 . exon 26868 27258 . - . ID=Phyra96957.1;Parent=Phyra96957;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_127 . repeat_region 32110 32141 . ? . description=trf scaffold_127 ensembl pseudogene 32148 33556 . - . ID=Phyra40835;biotype=pseudogene;external_name=gwEuk.127.20.1;logic_name=jgi_phyra1 scaffold_127 ensembl pseudogene 32148 33556 . - . ID=Phyra40835;Parent=Phyra40835;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_127 . exon 32148 32769 . - . ID=Phyra40835.2;Parent=Phyra40835;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_127 . exon 32821 33556 . - . ID=Phyra40835.1;Parent=Phyra40835;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_127 ensembl protein_coding_gene 38184 40599 . + . ID=Phyra72280;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_127000002;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 38184 40599 . + . ID=Phyra72280;Parent=Phyra72280;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 38184 38261 . + 0 ID=Phyra72280;Parent=Phyra72280;rank=1 scaffold_127 . exon 38184 38261 . + . ID=Phyra72280.1;Parent=Phyra72280;constitutive=1;rank=1 scaffold_127 . CDS 38335 39321 . + 0 ID=Phyra72280;Parent=Phyra72280;rank=2 scaffold_127 . exon 38335 39321 . + . ID=Phyra72280.2;Parent=Phyra72280;constitutive=1;rank=2 scaffold_127 . CDS 39399 39622 . + 0 ID=Phyra72280;Parent=Phyra72280;rank=3 scaffold_127 . exon 39399 39622 . + . ID=Phyra72280.3;Parent=Phyra72280;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_127 . CDS 39684 40403 . + 0 ID=Phyra72280;Parent=Phyra72280;rank=4 scaffold_127 . exon 39684 40403 . + . ID=Phyra72280.4;Parent=Phyra72280;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_127 . CDS 40455 40599 . + 0 ID=Phyra72280;Parent=Phyra72280;rank=5 scaffold_127 ensembl protein_coding_gene 34072 34824 . + . ID=Phyra84833;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000013;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 34072 34824 . + . ID=Phyra84833;Parent=Phyra84833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 34072 34824 . + 0 ID=Phyra84833;Parent=Phyra84833;rank=1 scaffold_127 . exon 34072 34824 . + . ID=Phyra84833.1;Parent=Phyra84833;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 35077 36303 . - . ID=Phyra84834;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000014;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 35077 36303 . - . ID=Phyra84834;Parent=Phyra84834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 35077 36303 . - 0 ID=Phyra84834;Parent=Phyra84834;rank=1 scaffold_127 . exon 35077 36303 . - . ID=Phyra84834.1;Parent=Phyra84834;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 37198 37968 . + . ID=Phyra84835;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000015;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 37198 37968 . + . ID=Phyra84835;Parent=Phyra84835;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 37198 37968 . + 0 ID=Phyra84835;Parent=Phyra84835;rank=1 scaffold_127 . exon 37198 37968 . + . ID=Phyra84835.1;Parent=Phyra84835;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 30450 31706 . + . ID=Phyra96960;biotype=protein_coding;external_name=C_scaffold_127000008;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 30450 31706 . + . ID=Phyra96960;Parent=Phyra96960;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 30450 30608 . + 0 ID=Phyra96960;Parent=Phyra96960;rank=1 scaffold_127 . exon 30450 30608 . + . ID=Phyra96960.1;Parent=Phyra96960;constitutive=1;rank=1 scaffold_127 . CDS 30871 30945 . + 0 ID=Phyra96960;Parent=Phyra96960;rank=2 scaffold_127 . exon 30871 30945 . + . ID=Phyra96960.2;Parent=Phyra96960;constitutive=1;rank=2 scaffold_127 . CDS 31006 31196 . + 0 ID=Phyra96960;Parent=Phyra96960;rank=3 scaffold_127 . exon 31006 31196 . + . ID=Phyra96960.3;Parent=Phyra96960;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_127 . CDS 31233 31658 . + 0 ID=Phyra96960;Parent=Phyra96960;rank=4 scaffold_127 . exon 31233 31658 . + . ID=Phyra96960.4;Parent=Phyra96960;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_127 . CDS 31703 31706 . + 0 ID=Phyra96960;Parent=Phyra96960;rank=5 scaffold_127 . exon 31703 31706 . + . ID=Phyra96960.5;Parent=Phyra96960;constitutive=1;ensembl_phase=2;rank=5 scaffold_127 . biological_region 43748 43751 0.999 + . logic_name=eponine scaffold_127 . biological_region 46460 46465 0.999 - . logic_name=eponine scaffold_127 . biological_region 46497 46498 0.999 + . logic_name=eponine scaffold_127 . biological_region 46516 46520 0.999 + . logic_name=eponine scaffold_127 . biological_region 46544 46549 0.999 + . logic_name=eponine scaffold_127 . biological_region 46588 46595 0.999 + . logic_name=eponine scaffold_127 . biological_region 46597 46601 0.999 - . logic_name=eponine scaffold_127 . biological_region 46612 46614 0.999 - . logic_name=eponine scaffold_127 . biological_region 47314 47315 0.999 - . logic_name=eponine scaffold_127 . biological_region 49069 49072 0.999 - . logic_name=eponine scaffold_127 . exon 40455 40599 . + . ID=Phyra72280.5;Parent=Phyra72280;constitutive=1;ensembl_phase=2;rank=5 scaffold_127 ensembl protein_coding_gene 46259 47365 . + . ID=Phyra84839;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000019;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 46259 47365 . + . ID=Phyra84839;Parent=Phyra84839;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 46259 47365 . + 0 ID=Phyra84839;Parent=Phyra84839;rank=1 scaffold_127 . exon 46259 47365 . + . ID=Phyra84839.1;Parent=Phyra84839;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 47577 48896 . - . ID=Phyra84840;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000020;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 47577 48896 . - . ID=Phyra84840;Parent=Phyra84840;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 47577 48896 . - 0 ID=Phyra84840;Parent=Phyra84840;rank=1 scaffold_127 . exon 47577 48896 . - . ID=Phyra84840.1;Parent=Phyra84840;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 41526 42331 . + . ID=Phyra96964;biotype=protein_coding;external_name=C_scaffold_127000012;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 41526 42331 . + . ID=Phyra96964;Parent=Phyra96964;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 41526 41673 . + 0 ID=Phyra96964;Parent=Phyra96964;rank=1 scaffold_127 . exon 41526 41673 . + . ID=Phyra96964.1;Parent=Phyra96964;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_127 . CDS 41753 41814 . + 0 ID=Phyra96964;Parent=Phyra96964;rank=2 scaffold_127 . exon 41753 41814 . + . ID=Phyra96964.2;Parent=Phyra96964;constitutive=1;ensembl_phase=1;rank=2 scaffold_127 . CDS 41896 42293 . + 0 ID=Phyra96964;Parent=Phyra96964;rank=3 scaffold_127 . exon 41896 42293 . + . ID=Phyra96964.3;Parent=Phyra96964;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_127 . CDS 42316 42331 . + 0 ID=Phyra96964;Parent=Phyra96964;rank=4 scaffold_127 . exon 42316 42331 . + . ID=Phyra96964.4;Parent=Phyra96964;constitutive=1;ensembl_phase=2;rank=4 scaffold_127 ensembl protein_coding_gene 42805 43922 . - . ID=Phyra96965;biotype=protein_coding;external_name=C_scaffold_127000013;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 42805 43922 . - . ID=Phyra96965;Parent=Phyra96965;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 42805 42895 . - 0 ID=Phyra96965;Parent=Phyra96965;rank=4 scaffold_127 . exon 42805 42895 . - . ID=Phyra96965.4;Parent=Phyra96965;constitutive=1;ensembl_phase=2;rank=4 scaffold_127 . CDS 42917 43221 . - 0 ID=Phyra96965;Parent=Phyra96965;rank=3 scaffold_127 . exon 42917 43221 . - . ID=Phyra96965.3;Parent=Phyra96965;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_127 . CDS 43296 43416 . - 0 ID=Phyra96965;Parent=Phyra96965;rank=2 scaffold_127 . exon 43296 43416 . - . ID=Phyra96965.2;Parent=Phyra96965;constitutive=1;ensembl_phase=2;rank=2 scaffold_127 . CDS 43480 43922 . - 0 ID=Phyra96965;Parent=Phyra96965;rank=1 scaffold_127 . exon 43480 43922 . - . ID=Phyra96965.1;Parent=Phyra96965;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_127 . repeat_region 58700 58707 . ? . description=dust scaffold_127 . repeat_region 59628 59677 . ? . description=dust scaffold_127 ensembl protein_coding_gene 50256 51090 . - . ID=Phyra84841;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000021;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 50256 51090 . - . ID=Phyra84841;Parent=Phyra84841;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 50256 50264 . - 0 ID=Phyra84841;Parent=Phyra84841;rank=4 scaffold_127 . exon 50256 50264 . - . ID=Phyra84841.4;Parent=Phyra84841;constitutive=1;rank=4 scaffold_127 . CDS 50340 50684 . - 0 ID=Phyra84841;Parent=Phyra84841;rank=3 scaffold_127 . exon 50340 50684 . - . ID=Phyra84841.3;Parent=Phyra84841;constitutive=1;rank=3 scaffold_127 . CDS 50762 51006 . - 0 ID=Phyra84841;Parent=Phyra84841;rank=2 scaffold_127 . exon 50762 51006 . - . ID=Phyra84841.2;Parent=Phyra84841;constitutive=1;ensembl_phase=1;rank=2 scaffold_127 . CDS 51078 51090 . - 0 ID=Phyra84841;Parent=Phyra84841;rank=1 scaffold_127 . exon 51078 51090 . - . ID=Phyra84841.1;Parent=Phyra84841;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_127 ensembl protein_coding_gene 51544 53488 . + . ID=Phyra84842;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000022;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 51544 53488 . + . ID=Phyra84842;Parent=Phyra84842;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 51544 53394 . + 0 ID=Phyra84842;Parent=Phyra84842;rank=1 scaffold_127 . exon 51544 53394 . + . ID=Phyra84842.1;Parent=Phyra84842;constitutive=1;rank=1 scaffold_127 . CDS 53417 53488 . + 0 ID=Phyra84842;Parent=Phyra84842;rank=2 scaffold_127 . exon 53417 53488 . + . ID=Phyra84842.2;Parent=Phyra84842;constitutive=1;rank=2 scaffold_127 ensembl protein_coding_gene 53725 56441 . - . ID=Phyra84843;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000023;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 53725 56441 . - . ID=Phyra84843;Parent=Phyra84843;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 53725 53751 . - 0 ID=Phyra84843;Parent=Phyra84843;rank=4 scaffold_127 . exon 53725 53751 . - . ID=Phyra84843.4;Parent=Phyra84843;constitutive=1;rank=4 scaffold_127 . CDS 53901 54222 . - 0 ID=Phyra84843;Parent=Phyra84843;rank=3 scaffold_127 . exon 53901 54222 . - . ID=Phyra84843.3;Parent=Phyra84843;constitutive=1;ensembl_phase=2;rank=3 scaffold_127 . CDS 54358 54527 . - 0 ID=Phyra84843;Parent=Phyra84843;rank=2 scaffold_127 . exon 54358 54527 . - . ID=Phyra84843.2;Parent=Phyra84843;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_127 . CDS 54588 56441 . - 0 ID=Phyra84843;Parent=Phyra84843;rank=1 scaffold_127 . exon 54588 56441 . - . ID=Phyra84843.1;Parent=Phyra84843;constitutive=1;rank=1 scaffold_127 . repeat_region 60912 61133 . - . description=GypsyPi-1c_I-int scaffold_127 . repeat_region 61508 63760 . - . description=GypsyPi-1c_I-int scaffold_127 . biological_region 64239 64240 0.999 - . logic_name=eponine scaffold_127 . biological_region 64291 64296 0.999 - . logic_name=eponine scaffold_127 . biological_region 64331 64332 0.999 + . logic_name=eponine scaffold_127 . biological_region 64368 64369 0.999 + . logic_name=eponine scaffold_127 . biological_region 64393 64398 0.999 - . logic_name=eponine scaffold_127 . biological_region 64428 64432 0.999 + . logic_name=eponine scaffold_127 . biological_region 64445 64451 0.999 - . logic_name=eponine scaffold_127 . repeat_region 64753 64773 . ? . description=trf scaffold_127 . biological_region 65957 65961 0.999 - . logic_name=eponine scaffold_127 . biological_region 67544 67547 0.999 - . logic_name=eponine scaffold_127 ensembl protein_coding_gene 61566 61958 . - . ID=Phyra40844;biotype=protein_coding;external_name=gwEuk.127.29.1;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 61566 61958 . - . ID=Phyra40844;Parent=Phyra40844;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 61566 61958 . - 0 ID=Phyra40844;Parent=Phyra40844;rank=1 scaffold_127 . exon 61566 61958 . - . ID=Phyra40844.1;Parent=Phyra40844;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 63068 65181 . - . ID=Phyra84844;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000024;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 63068 65181 . - . ID=Phyra84844;Parent=Phyra84844;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 63068 63239 . - 0 ID=Phyra84844;Parent=Phyra84844;rank=5 scaffold_127 . exon 63068 63239 . - . ID=Phyra84844.5;Parent=Phyra84844;constitutive=1;ensembl_phase=2;rank=5 scaffold_127 . CDS 63312 63766 . - 0 ID=Phyra84844;Parent=Phyra84844;rank=4 scaffold_127 . exon 63312 63766 . - . ID=Phyra84844.4;Parent=Phyra84844;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_127 . CDS 63817 64382 . - 0 ID=Phyra84844;Parent=Phyra84844;rank=3 scaffold_127 . exon 63817 64382 . - . ID=Phyra84844.3;Parent=Phyra84844;constitutive=1;ensembl_phase=1;rank=3 scaffold_127 . CDS 64707 64902 . - 0 ID=Phyra84844;Parent=Phyra84844;rank=2 scaffold_127 . exon 64707 64902 . - . ID=Phyra84844.2;Parent=Phyra84844;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_127 . CDS 65104 65181 . - 0 ID=Phyra84844;Parent=Phyra84844;rank=1 scaffold_127 . exon 65104 65181 . - . ID=Phyra84844.1;Parent=Phyra84844;constitutive=1;rank=1 scaffold_127 . repeat_region 71782 71790 . ? . description=dust scaffold_127 . repeat_region 71923 72058 . ? . description=dust scaffold_127 . repeat_region 72163 72170 . ? . description=dust scaffold_127 . repeat_region 78533 78582 . ? . description=dust scaffold_127 . repeat_region 79373 79422 . ? . description=dust scaffold_127 . repeat_region 79639 79653 . ? . description=dust scaffold_127 . repeat_region 79660 79709 . ? . description=dust scaffold_127 . repeat_region 79735 79757 . ? . description=dust scaffold_127 ensembl protein_coding_gene 71041 71764 . - . ID=Phyra84845;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000025;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 71041 71764 . - . ID=Phyra84845;Parent=Phyra84845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 71041 71078 . - 0 ID=Phyra84845;Parent=Phyra84845;rank=2 scaffold_127 . exon 71041 71078 . - . ID=Phyra84845.2;Parent=Phyra84845;constitutive=1;ensembl_phase=1;rank=2 scaffold_127 . CDS 71335 71764 . - 0 ID=Phyra84845;Parent=Phyra84845;rank=1 scaffold_127 . exon 71335 71764 . - . ID=Phyra84845.1;Parent=Phyra84845;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_127 ensembl protein_coding_gene 75243 76407 . + . ID=Phyra84846;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000026;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 75243 76407 . + . ID=Phyra84846;Parent=Phyra84846;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 75243 75450 . + 0 ID=Phyra84846;Parent=Phyra84846;rank=1 scaffold_127 . exon 75243 75450 . + . ID=Phyra84846.1;Parent=Phyra84846;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_127 . CDS 75522 75716 . + 0 ID=Phyra84846;Parent=Phyra84846;rank=2 scaffold_127 . exon 75522 75716 . + . ID=Phyra84846.2;Parent=Phyra84846;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_127 . CDS 75785 76407 . + 0 ID=Phyra84846;Parent=Phyra84846;rank=3 scaffold_127 . exon 75785 76407 . + . ID=Phyra84846.3;Parent=Phyra84846;constitutive=1;ensembl_phase=1;rank=3 scaffold_127 ensembl protein_coding_gene 76589 77998 . - . ID=Phyra84847;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000027;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 76589 77998 . - . ID=Phyra84847;Parent=Phyra84847;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 76589 77998 . - 0 ID=Phyra84847;Parent=Phyra84847;rank=1 scaffold_127 . exon 76589 77998 . - . ID=Phyra84847.1;Parent=Phyra84847;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 79896 82904 . + . ID=Phyra96967;biotype=protein_coding;external_name=C_scaffold_127000015;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 79896 82904 . + . ID=Phyra96967;Parent=Phyra96967;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 79896 80370 . + 0 ID=Phyra96967;Parent=Phyra96967;rank=1 scaffold_127 . exon 79896 80370 . + . ID=Phyra96967.1;Parent=Phyra96967;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_127 . CDS 80455 80673 . + 0 ID=Phyra96967;Parent=Phyra96967;rank=2 scaffold_127 . CDS 80731 81129 . + 0 ID=Phyra96967;Parent=Phyra96967;rank=3 scaffold_127 . CDS 81250 81554 . + 0 ID=Phyra96967;Parent=Phyra96967;rank=4 scaffold_127 . CDS 81633 81732 . + 0 ID=Phyra96967;Parent=Phyra96967;rank=5 scaffold_127 . CDS 82282 82475 . + 0 ID=Phyra96967;Parent=Phyra96967;rank=6 scaffold_127 . CDS 82713 82904 . + 0 ID=Phyra96967;Parent=Phyra96967;rank=7 scaffold_127 . biological_region 80110 80116 0.999 - . logic_name=eponine scaffold_127 . biological_region 80169 80172 0.999 - . logic_name=eponine scaffold_127 . biological_region 86831 86835 0.999 - . logic_name=eponine scaffold_127 . biological_region 88067 88070 0.999 - . logic_name=eponine scaffold_127 . biological_region 89230 89238 0.999 + . logic_name=eponine scaffold_127 . biological_region 89279 89279 0.999 - . logic_name=eponine scaffold_127 ensembl protein_coding_gene 83189 85456 . - . ID=Phyra84849;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000029;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 83189 85456 . - . ID=Phyra84849;Parent=Phyra84849;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 83189 85456 . - 0 ID=Phyra84849;Parent=Phyra84849;rank=1 scaffold_127 . exon 83189 85456 . - . ID=Phyra84849.1;Parent=Phyra84849;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 87033 88532 . + . ID=Phyra84850;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000030;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 87033 88532 . + . ID=Phyra84850;Parent=Phyra84850;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 87033 88532 . + 0 ID=Phyra84850;Parent=Phyra84850;rank=1 scaffold_127 . exon 87033 88532 . + . ID=Phyra84850.1;Parent=Phyra84850;constitutive=1;rank=1 scaffold_127 . exon 80455 80673 . + . ID=Phyra96967.2;Parent=Phyra96967;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_127 . exon 80731 81129 . + . ID=Phyra96967.3;Parent=Phyra96967;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_127 . exon 81250 81554 . + . ID=Phyra96967.4;Parent=Phyra96967;constitutive=1;ensembl_phase=1;rank=4 scaffold_127 . exon 81633 81732 . + . ID=Phyra96967.5;Parent=Phyra96967;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_127 . exon 82282 82475 . + . ID=Phyra96967.6;Parent=Phyra96967;constitutive=1;ensembl_phase=1;rank=6 scaffold_127 . exon 82713 82904 . + . ID=Phyra96967.7;Parent=Phyra96967;constitutive=1;rank=7 scaffold_127 ensembl protein_coding_gene 89034 89435 . - . ID=Phyra96968;biotype=protein_coding;external_name=C_scaffold_127000016;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 89034 89435 . - . ID=Phyra96968;Parent=Phyra96968;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 89034 89435 . - 0 ID=Phyra96968;Parent=Phyra96968;rank=1 scaffold_127 . exon 89034 89435 . - . ID=Phyra96968.1;Parent=Phyra96968;constitutive=1;rank=1 scaffold_127 . repeat_region 90528 90668 . ? . description=trf scaffold_127 . repeat_region 90558 90697 . ? . description=trf scaffold_127 . repeat_region 90558 90697 . ? . description=trf scaffold_127 . repeat_region 90571 90667 . ? . description=trf scaffold_127 . repeat_region 90735 90758 . ? . description=trf scaffold_127 . repeat_region 90739 90758 . ? . description=dust scaffold_127 . repeat_region 93148 93197 . ? . description=trf scaffold_127 ensembl protein_coding_gene 90306 96926 . - . ID=Phyra84852;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000032;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 90306 96926 . - . ID=Phyra84852;Parent=Phyra84852;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 90306 93416 . - 0 ID=Phyra84852;Parent=Phyra84852;rank=8 scaffold_127 . exon 90306 93416 . - . ID=Phyra84852.8;Parent=Phyra84852;constitutive=1;rank=8 scaffold_127 . CDS 93534 93571 . - 0 ID=Phyra84852;Parent=Phyra84852;rank=7 scaffold_127 . exon 93534 93571 . - . ID=Phyra84852.7;Parent=Phyra84852;constitutive=1;ensembl_phase=1;rank=7 scaffold_127 . CDS 94043 94582 . - 0 ID=Phyra84852;Parent=Phyra84852;rank=6 scaffold_127 . exon 94043 94582 . - . ID=Phyra84852.6;Parent=Phyra84852;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_127 . CDS 94631 94734 . - 0 ID=Phyra84852;Parent=Phyra84852;rank=5 scaffold_127 . exon 94631 94734 . - . ID=Phyra84852.5;Parent=Phyra84852;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_127 . CDS 94801 94876 . - 0 ID=Phyra84852;Parent=Phyra84852;rank=4 scaffold_127 . exon 94801 94876 . - . ID=Phyra84852.4;Parent=Phyra84852;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_127 . CDS 94919 95242 . - 0 ID=Phyra84852;Parent=Phyra84852;rank=3 scaffold_127 . exon 94919 95242 . - . ID=Phyra84852.3;Parent=Phyra84852;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_127 . CDS 95345 95367 . - 0 ID=Phyra84852;Parent=Phyra84852;rank=2 scaffold_127 . exon 95345 95367 . - . ID=Phyra84852.2;Parent=Phyra84852;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_127 . CDS 96043 96926 . - 0 ID=Phyra84852;Parent=Phyra84852;rank=1 scaffold_127 . exon 96043 96926 . - . ID=Phyra84852.1;Parent=Phyra84852;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_127 ensembl protein_coding_gene 97182 100406 . + . ID=Phyra84853;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000033;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 97182 100406 . + . ID=Phyra84853;Parent=Phyra84853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 97182 98939 . + 0 ID=Phyra84853;Parent=Phyra84853;rank=1 scaffold_127 . exon 97182 98939 . + . ID=Phyra84853.1;Parent=Phyra84853;constitutive=1;rank=1 scaffold_127 . CDS 99015 100406 . + 0 ID=Phyra84853;Parent=Phyra84853;rank=2 scaffold_127 . exon 99015 100406 . + . ID=Phyra84853.2;Parent=Phyra84853;constitutive=1;rank=2 scaffold_127 . biological_region 103798 103802 0.999 - . logic_name=eponine scaffold_127 . biological_region 106036 106039 0.999 - . logic_name=eponine scaffold_127 ensembl protein_coding_gene 101291 102502 . + . ID=Phyra84854;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000034;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 101291 102502 . + . ID=Phyra84854;Parent=Phyra84854;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 101291 102502 . + 0 ID=Phyra84854;Parent=Phyra84854;rank=1 scaffold_127 . exon 101291 102502 . + . ID=Phyra84854.1;Parent=Phyra84854;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 103244 104437 . + . ID=Phyra84855;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000035;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 103244 104437 . + . ID=Phyra84855;Parent=Phyra84855;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 103244 104437 . + 0 ID=Phyra84855;Parent=Phyra84855;rank=1 scaffold_127 . exon 103244 104437 . + . ID=Phyra84855.1;Parent=Phyra84855;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 105469 106713 . + . ID=Phyra84856;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000036;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 105469 106713 . + . ID=Phyra84856;Parent=Phyra84856;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 105469 106713 . + 0 ID=Phyra84856;Parent=Phyra84856;rank=1 scaffold_127 . exon 105469 106713 . + . ID=Phyra84856.1;Parent=Phyra84856;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 108145 109161 . + . ID=Phyra84857;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_127000037;logic_name=jgi_phyra1 scaffold_127 ensembl transcript 108145 109161 . + . ID=Phyra84857;Parent=Phyra84857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_127 . CDS 108145 109161 . + 0 ID=Phyra84857;Parent=Phyra84857;rank=1 scaffold_127 . exon 108145 109161 . + . ID=Phyra84857.1;Parent=Phyra84857;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_126 1 110710 scaffold_126 . repeat_region 260 271 . ? . description=dust scaffold_126 . repeat_region 1489 1638 . - . description=Polinton-1_PI scaffold_126 . repeat_region 1772 1821 . ? . description=dust scaffold_126 . repeat_region 2452 2534 . - . description=Polinton-1_PI scaffold_126 . repeat_region 3003 5396 . - . description=Polinton-1_PI scaffold_126 . repeat_region 5507 5898 . ? . description=dust scaffold_126 . repeat_region 5902 6825 . - . description=Polinton-1_PI scaffold_126 . repeat_region 6826 6875 . ? . description=dust scaffold_126 . repeat_region 10712 25720 . ? . description=dust scaffold_126 . repeat_region 25722 26037 . ? . description=dust scaffold_126 . repeat_region 25723 26043 . ? . description=trf scaffold_126 . repeat_region 26042 26091 . ? . description=trf scaffold_126 . repeat_region 26042 26091 . ? . description=trf scaffold_126 . repeat_region 26639 26688 . ? . description=dust scaffold_126 . repeat_region 26689 29445 . - . description=GypsyPi-1c_I-int scaffold_126 ensembl protein_coding_gene 26583 29641 . - . ID=Phyra84816;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_126000001;logic_name=jgi_phyra1 scaffold_126 ensembl transcript 26583 29641 . - . ID=Phyra84816;Parent=Phyra84816;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_126 . CDS 26583 26586 . - 0 ID=Phyra84816;Parent=Phyra84816;rank=3 scaffold_126 . exon 26583 26586 . - . ID=Phyra84816.3;Parent=Phyra84816;constitutive=1;ensembl_phase=2;rank=3 scaffold_126 . CDS 26707 28672 . - 0 ID=Phyra84816;Parent=Phyra84816;rank=2 scaffold_126 . exon 26707 28672 . - . ID=Phyra84816.2;Parent=Phyra84816;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_126 . CDS 28705 29641 . - 0 ID=Phyra84816;Parent=Phyra84816;rank=1 scaffold_126 . biological_region 27921 27923 0.999 - . logic_name=eponine scaffold_126 . exon 28705 29641 . - . ID=Phyra84816.1;Parent=Phyra84816;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_126 ensembl protein_coding_gene 34621 37549 . + . ID=Phyra84817;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_126000002;logic_name=jgi_phyra1 scaffold_126 ensembl transcript 34621 37549 . + . ID=Phyra84817;Parent=Phyra84817;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_126 . CDS 34621 35483 . + 0 ID=Phyra84817;Parent=Phyra84817;rank=1 scaffold_126 . exon 34621 35483 . + . ID=Phyra84817.1;Parent=Phyra84817;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_126 . CDS 35653 35807 . + 0 ID=Phyra84817;Parent=Phyra84817;rank=2 scaffold_126 . exon 35653 35807 . + . ID=Phyra84817.2;Parent=Phyra84817;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_126 . CDS 35928 36242 . + 0 ID=Phyra84817;Parent=Phyra84817;rank=3 scaffold_126 . exon 35928 36242 . + . ID=Phyra84817.3;Parent=Phyra84817;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_126 . CDS 36723 37549 . + 0 ID=Phyra84817;Parent=Phyra84817;rank=4 scaffold_126 . exon 36723 37549 . + . ID=Phyra84817.4;Parent=Phyra84817;constitutive=1;ensembl_phase=1;rank=4 scaffold_126 . repeat_region 40569 41231 . ? . description=trf scaffold_126 . repeat_region 40570 41205 . ? . description=trf scaffold_126 . repeat_region 40630 41221 . ? . description=trf scaffold_126 . repeat_region 46066 46343 . ? . description=trf scaffold_126 . repeat_region 46066 46343 . ? . description=trf scaffold_126 . repeat_region 46255 46262 . ? . description=dust scaffold_126 . biological_region 48305 48310 0.999 + . logic_name=eponine scaffold_126 . biological_region 48320 48321 0.999 - . logic_name=eponine scaffold_126 . repeat_region 51288 51296 . ? . description=dust scaffold_126 . repeat_region 54178 54227 . ? . description=dust scaffold_126 . repeat_region 65272 65289 . ? . description=dust scaffold_126 . repeat_region 67474 67518 . ? . description=dust scaffold_126 . repeat_region 67475 67521 . + . description=(TCCG)n scaffold_126 . repeat_region 67477 67511 . ? . description=trf scaffold_126 . repeat_region 67477 67518 . ? . description=trf scaffold_126 . repeat_region 67656 67683 . ? . description=trf scaffold_126 . repeat_region 67709 67895 . ? . description=dust scaffold_126 . repeat_region 69253 69302 . ? . description=dust scaffold_126 . repeat_region 69801 69830 . ? . description=dust scaffold_126 . repeat_region 69936 69958 . ? . description=dust scaffold_126 . repeat_region 70797 73086 . ? . description=dust scaffold_126 ensembl protein_coding_gene 74355 74900 . + . ID=Phyra84818;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_126000003;logic_name=jgi_phyra1 scaffold_126 ensembl transcript 74355 74900 . + . ID=Phyra84818;Parent=Phyra84818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_126 . CDS 74355 74900 . + 0 ID=Phyra84818;Parent=Phyra84818;rank=1 scaffold_126 . exon 74355 74900 . + . ID=Phyra84818.1;Parent=Phyra84818;constitutive=1;rank=1 scaffold_126 . repeat_region 75298 93967 . ? . description=dust scaffold_126 ensembl protein_coding_gene 99968 103098 . + . ID=Phyra84819;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_126000004;logic_name=jgi_phyra1 scaffold_126 ensembl transcript 99968 103098 . + . ID=Phyra84819;Parent=Phyra84819;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_126 . CDS 99968 100749 . + 0 ID=Phyra84819;Parent=Phyra84819;rank=1 scaffold_126 . exon 99968 100749 . + . ID=Phyra84819.1;Parent=Phyra84819;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_126 . CDS 101054 102134 . + 0 ID=Phyra84819;Parent=Phyra84819;rank=2 scaffold_126 . exon 101054 102134 . + . ID=Phyra84819.2;Parent=Phyra84819;constitutive=1;ensembl_phase=2;rank=2 scaffold_126 . CDS 102189 103034 . + 0 ID=Phyra84819;Parent=Phyra84819;rank=3 scaffold_126 . CDS 103057 103098 . + 0 ID=Phyra84819;Parent=Phyra84819;rank=4 scaffold_126 . repeat_region 102356 102387 . ? . description=trf scaffold_126 . biological_region 102498 102502 0.999 - . logic_name=eponine scaffold_126 . repeat_region 103154 104864 . ? . description=dust scaffold_126 . biological_region 105622 105624 0.999 + . logic_name=eponine scaffold_126 . biological_region 105701 105704 0.999 - . logic_name=eponine scaffold_126 . repeat_region 106277 106328 . ? . description=trf scaffold_126 . repeat_region 106374 106424 . ? . description=dust scaffold_126 . repeat_region 108809 108873 . ? . description=trf scaffold_126 . exon 102189 103034 . + . ID=Phyra84819.3;Parent=Phyra84819;constitutive=1;rank=3 scaffold_126 . exon 103057 103098 . + . ID=Phyra84819.4;Parent=Phyra84819;constitutive=1;rank=4 scaffold_126 ensembl protein_coding_gene 105147 105796 . - . ID=Phyra84820;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_126000005;logic_name=jgi_phyra1 scaffold_126 ensembl transcript 105147 105796 . - . ID=Phyra84820;Parent=Phyra84820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_126 . CDS 105147 105178 . - 0 ID=Phyra84820;Parent=Phyra84820;rank=2 scaffold_126 . exon 105147 105178 . - . ID=Phyra84820.2;Parent=Phyra84820;constitutive=1;ensembl_phase=1;rank=2 scaffold_126 . CDS 105217 105796 . - 0 ID=Phyra84820;Parent=Phyra84820;rank=1 scaffold_126 . exon 105217 105796 . - . ID=Phyra84820.1;Parent=Phyra84820;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_125 1 111622 scaffold_125 . repeat_region 661 1808 . ? . description=dust scaffold_125 . biological_region 9016 9022 0.999 + . logic_name=eponine scaffold_125 ensembl protein_coding_gene 121 552 . - . ID=Phyra84777;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000001;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 121 552 . - . ID=Phyra84777;Parent=Phyra84777;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 121 435 . - 0 ID=Phyra84777;Parent=Phyra84777;rank=2 scaffold_125 . exon 121 435 . - . ID=Phyra84777.2;Parent=Phyra84777;constitutive=1;rank=2 scaffold_125 . CDS 520 552 . - 0 ID=Phyra84777;Parent=Phyra84777;rank=1 scaffold_125 . exon 520 552 . - . ID=Phyra84777.1;Parent=Phyra84777;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 7234 9189 . - . ID=Phyra84778;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000002;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 7234 9189 . - . ID=Phyra84778;Parent=Phyra84778;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 7234 9189 . - 0 ID=Phyra84778;Parent=Phyra84778;rank=1 scaffold_125 . exon 7234 9189 . - . ID=Phyra84778.1;Parent=Phyra84778;constitutive=1;rank=1 scaffold_125 . repeat_region 14271 14295 . ? . description=trf scaffold_125 ensembl protein_coding_gene 17890 18219 . + . ID=Phyra40767;biotype=protein_coding;external_name=gwEuk.125.11.1;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 17890 18219 . + . ID=Phyra40767;Parent=Phyra40767;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 17890 18219 . + 0 ID=Phyra40767;Parent=Phyra40767;rank=1 scaffold_125 . exon 17890 18219 . + . ID=Phyra40767.1;Parent=Phyra40767;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 9909 12040 . + . ID=Phyra84779;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000003;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 9909 12040 . + . ID=Phyra84779;Parent=Phyra84779;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 9909 11858 . + 0 ID=Phyra84779;Parent=Phyra84779;rank=1 scaffold_125 . exon 9909 11858 . + . ID=Phyra84779.1;Parent=Phyra84779;constitutive=1;rank=1 scaffold_125 . CDS 11930 12040 . + 0 ID=Phyra84779;Parent=Phyra84779;rank=2 scaffold_125 . exon 11930 12040 . + . ID=Phyra84779.2;Parent=Phyra84779;constitutive=1;rank=2 scaffold_125 ensembl protein_coding_gene 12605 14330 . - . ID=Phyra84780;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000004;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 12605 14330 . - . ID=Phyra84780;Parent=Phyra84780;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 12605 13469 . - 0 ID=Phyra84780;Parent=Phyra84780;rank=3 scaffold_125 . exon 12605 13469 . - . ID=Phyra84780.3;Parent=Phyra84780;constitutive=1;ensembl_phase=2;rank=3 scaffold_125 . CDS 13546 13647 . - 0 ID=Phyra84780;Parent=Phyra84780;rank=2 scaffold_125 . exon 13546 13647 . - . ID=Phyra84780.2;Parent=Phyra84780;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_125 . CDS 13720 14330 . - 0 ID=Phyra84780;Parent=Phyra84780;rank=1 scaffold_125 . exon 13720 14330 . - . ID=Phyra84780.1;Parent=Phyra84780;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_125 ensembl protein_coding_gene 14823 15386 . + . ID=Phyra84781;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000005;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 14823 15386 . + . ID=Phyra84781;Parent=Phyra84781;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 14823 15386 . + 0 ID=Phyra84781;Parent=Phyra84781;rank=1 scaffold_125 . exon 14823 15386 . + . ID=Phyra84781.1;Parent=Phyra84781;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 15748 16606 . - . ID=Phyra84782;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000006;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 15748 16606 . - . ID=Phyra84782;Parent=Phyra84782;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 15748 15903 . - 0 ID=Phyra84782;Parent=Phyra84782;rank=2 scaffold_125 . exon 15748 15903 . - . ID=Phyra84782.2;Parent=Phyra84782;constitutive=1;rank=2 scaffold_125 . CDS 16022 16606 . - 0 ID=Phyra84782;Parent=Phyra84782;rank=1 scaffold_125 . exon 16022 16606 . - . ID=Phyra84782.1;Parent=Phyra84782;constitutive=1;rank=1 scaffold_125 . repeat_region 19320 19327 . ? . description=dust scaffold_125 ensembl protein_coding_gene 19606 21362 . + . ID=Phyra72273;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_125000001;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 19606 21362 . + . ID=Phyra72273;Parent=Phyra72273;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 19606 19707 . + 0 ID=Phyra72273;Parent=Phyra72273;rank=1 scaffold_125 . exon 19606 19707 . + . ID=Phyra72273.1;Parent=Phyra72273;constitutive=1;rank=1 scaffold_125 . CDS 19909 20616 . + 0 ID=Phyra72273;Parent=Phyra72273;rank=2 scaffold_125 . exon 19909 20616 . + . ID=Phyra72273.2;Parent=Phyra72273;constitutive=1;rank=2 scaffold_125 . CDS 20691 21362 . + 0 ID=Phyra72273;Parent=Phyra72273;rank=3 scaffold_125 . exon 20691 21362 . + . ID=Phyra72273.3;Parent=Phyra72273;constitutive=1;rank=3 scaffold_125 ensembl protein_coding_gene 24417 26536 . - . ID=Phyra72274;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_125000002;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 24417 26536 . - . ID=Phyra72274;Parent=Phyra72274;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 24417 24590 . - 0 ID=Phyra72274;Parent=Phyra72274;rank=7 scaffold_125 . exon 24417 24590 . - . ID=Phyra72274.7;Parent=Phyra72274;constitutive=1;rank=7 scaffold_125 . CDS 24655 25065 . - 0 ID=Phyra72274;Parent=Phyra72274;rank=6 scaffold_125 . exon 24655 25065 . - . ID=Phyra72274.6;Parent=Phyra72274;constitutive=1;rank=6 scaffold_125 . CDS 25131 25196 . - 0 ID=Phyra72274;Parent=Phyra72274;rank=5 scaffold_125 . exon 25131 25196 . - . ID=Phyra72274.5;Parent=Phyra72274;constitutive=1;rank=5 scaffold_125 . CDS 25258 26189 . - 0 ID=Phyra72274;Parent=Phyra72274;rank=4 scaffold_125 . exon 25258 26189 . - . ID=Phyra72274.4;Parent=Phyra72274;constitutive=1;ensembl_phase=1;rank=4 scaffold_125 . CDS 26266 26319 . - 0 ID=Phyra72274;Parent=Phyra72274;rank=3 scaffold_125 . exon 26266 26319 . - . ID=Phyra72274.3;Parent=Phyra72274;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_125 . CDS 26404 26492 . - 0 ID=Phyra72274;Parent=Phyra72274;rank=2 scaffold_125 . exon 26404 26492 . - . ID=Phyra72274.2;Parent=Phyra72274;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_125 . CDS 26517 26536 . - 0 ID=Phyra72274;Parent=Phyra72274;rank=1 scaffold_125 . exon 26517 26536 . - . ID=Phyra72274.1;Parent=Phyra72274;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_125 ensembl protein_coding_gene 27074 29224 . - . ID=Phyra84786;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000010;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 27074 29224 . - . ID=Phyra84786;Parent=Phyra84786;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 27074 29224 . - 0 ID=Phyra84786;Parent=Phyra84786;rank=1 scaffold_125 . exon 27074 29224 . - . ID=Phyra84786.1;Parent=Phyra84786;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 21617 23802 . + . ID=Phyra96936;biotype=protein_coding;external_name=C_scaffold_125000002;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 21617 23802 . + . ID=Phyra96936;Parent=Phyra96936;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 21617 21751 . + 0 ID=Phyra96936;Parent=Phyra96936;rank=1 scaffold_125 . exon 21617 21751 . + . ID=Phyra96936.1;Parent=Phyra96936;constitutive=1;rank=1 scaffold_125 . CDS 21823 21959 . + 0 ID=Phyra96936;Parent=Phyra96936;rank=2 scaffold_125 . exon 21823 21959 . + . ID=Phyra96936.2;Parent=Phyra96936;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_125 . CDS 22051 22119 . + 0 ID=Phyra96936;Parent=Phyra96936;rank=3 scaffold_125 . exon 22051 22119 . + . ID=Phyra96936.3;Parent=Phyra96936;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_125 . CDS 22189 22417 . + 0 ID=Phyra96936;Parent=Phyra96936;rank=4 scaffold_125 . exon 22189 22417 . + . ID=Phyra96936.4;Parent=Phyra96936;constitutive=1;ensembl_phase=2;rank=4 scaffold_125 . CDS 22503 22578 . + 0 ID=Phyra96936;Parent=Phyra96936;rank=5 scaffold_125 . exon 22503 22578 . + . ID=Phyra96936.5;Parent=Phyra96936;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_125 . CDS 23012 23094 . + 0 ID=Phyra96936;Parent=Phyra96936;rank=6 scaffold_125 . exon 23012 23094 . + . ID=Phyra96936.6;Parent=Phyra96936;constitutive=1;ensembl_phase=1;rank=6 scaffold_125 . CDS 23166 23244 . + 0 ID=Phyra96936;Parent=Phyra96936;rank=7 scaffold_125 . exon 23166 23244 . + . ID=Phyra96936.7;Parent=Phyra96936;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_125 . CDS 23389 23489 . + 0 ID=Phyra96936;Parent=Phyra96936;rank=8 scaffold_125 . exon 23389 23489 . + . ID=Phyra96936.8;Parent=Phyra96936;constitutive=1;ensembl_phase=1;rank=8 scaffold_125 . CDS 23552 23638 . + 0 ID=Phyra96936;Parent=Phyra96936;rank=9 scaffold_125 . exon 23552 23638 . + . ID=Phyra96936.9;Parent=Phyra96936;constitutive=1;rank=9 scaffold_125 . CDS 23707 23802 . + 0 ID=Phyra96936;Parent=Phyra96936;rank=10 scaffold_125 . exon 23707 23802 . + . ID=Phyra96936.10;Parent=Phyra96936;constitutive=1;rank=10 scaffold_125 . biological_region 28903 28906 0.999 + . logic_name=eponine scaffold_125 . biological_region 28953 28959 0.999 + . logic_name=eponine scaffold_125 . biological_region 29006 29008 0.999 + . logic_name=eponine scaffold_125 . biological_region 29041 29043 0.999 - . logic_name=eponine scaffold_125 . biological_region 29081 29086 0.999 - . logic_name=eponine scaffold_125 . biological_region 29133 29137 0.999 - . logic_name=eponine scaffold_125 . biological_region 32314 32316 0.999 - . logic_name=eponine scaffold_125 . biological_region 32937 32938 0.999 + . logic_name=eponine scaffold_125 . biological_region 32982 32987 0.999 + . logic_name=eponine scaffold_125 . biological_region 33021 33022 0.999 + . logic_name=eponine scaffold_125 . biological_region 33088 33091 0.999 + . logic_name=eponine scaffold_125 . biological_region 34302 34308 0.999 - . logic_name=eponine scaffold_125 . biological_region 34319 34326 0.999 - . logic_name=eponine scaffold_125 . biological_region 34359 34361 0.999 + . logic_name=eponine scaffold_125 . biological_region 34375 34381 0.999 - . logic_name=eponine scaffold_125 . biological_region 35955 35960 0.999 + . logic_name=eponine scaffold_125 . biological_region 36031 36038 0.999 + . logic_name=eponine scaffold_125 ensembl protein_coding_gene 29767 33185 . - . ID=Phyra84787;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000011;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 29767 33185 . - . ID=Phyra84787;Parent=Phyra84787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 29767 32790 . - 0 ID=Phyra84787;Parent=Phyra84787;rank=2 scaffold_125 . exon 29767 32790 . - . ID=Phyra84787.2;Parent=Phyra84787;constitutive=1;rank=2 scaffold_125 . CDS 32868 33185 . - 0 ID=Phyra84787;Parent=Phyra84787;rank=1 scaffold_125 . exon 32868 33185 . - . ID=Phyra84787.1;Parent=Phyra84787;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 33934 36293 . + . ID=Phyra84788;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000012;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 33934 36293 . + . ID=Phyra84788;Parent=Phyra84788;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 33934 34737 . + 0 ID=Phyra84788;Parent=Phyra84788;rank=1 scaffold_125 . exon 33934 34737 . + . ID=Phyra84788.1;Parent=Phyra84788;constitutive=1;rank=1 scaffold_125 . CDS 34808 35927 . + 0 ID=Phyra84788;Parent=Phyra84788;rank=2 scaffold_125 . exon 34808 35927 . + . ID=Phyra84788.2;Parent=Phyra84788;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_125 . CDS 36037 36293 . + 0 ID=Phyra84788;Parent=Phyra84788;rank=3 scaffold_125 . exon 36037 36293 . + . ID=Phyra84788.3;Parent=Phyra84788;constitutive=1;ensembl_phase=1;rank=3 scaffold_125 . repeat_region 39769 39776 . ? . description=dust scaffold_125 . repeat_region 41257 41276 . ? . description=dust scaffold_125 . repeat_region 41943 41950 . ? . description=dust scaffold_125 ensembl protein_coding_gene 41388 42090 . - . ID=Phyra40785;biotype=protein_coding;external_name=gwEuk.125.29.1;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 41388 42090 . - . ID=Phyra40785;Parent=Phyra40785;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 41388 41932 . - 0 ID=Phyra40785;Parent=Phyra40785;rank=2 scaffold_125 . exon 41388 41932 . - . ID=Phyra40785.2;Parent=Phyra40785;constitutive=1;ensembl_phase=1;rank=2 scaffold_125 . CDS 42030 42090 . - 0 ID=Phyra40785;Parent=Phyra40785;rank=1 scaffold_125 . exon 42030 42090 . - . ID=Phyra40785.1;Parent=Phyra40785;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_125 ensembl protein_coding_gene 37884 39062 . - . ID=Phyra84789;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000013;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 37884 39062 . - . ID=Phyra84789;Parent=Phyra84789;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 37884 37907 . - 0 ID=Phyra84789;Parent=Phyra84789;rank=3 scaffold_125 . exon 37884 37907 . - . ID=Phyra84789.3;Parent=Phyra84789;constitutive=1;rank=3 scaffold_125 . CDS 37948 38858 . - 0 ID=Phyra84789;Parent=Phyra84789;rank=2 scaffold_125 . exon 37948 38858 . - . ID=Phyra84789.2;Parent=Phyra84789;constitutive=1;ensembl_phase=1;rank=2 scaffold_125 . CDS 38930 39062 . - 0 ID=Phyra84789;Parent=Phyra84789;rank=1 scaffold_125 . exon 38930 39062 . - . ID=Phyra84789.1;Parent=Phyra84789;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_125 ensembl protein_coding_gene 42646 43952 . + . ID=Phyra84791;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000015;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 42646 43952 . + . ID=Phyra84791;Parent=Phyra84791;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 42646 42658 . + 0 ID=Phyra84791;Parent=Phyra84791;rank=1 scaffold_125 . exon 42646 42658 . + . ID=Phyra84791.1;Parent=Phyra84791;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_125 . CDS 42770 43594 . + 0 ID=Phyra84791;Parent=Phyra84791;rank=2 scaffold_125 . exon 42770 43594 . + . ID=Phyra84791.2;Parent=Phyra84791;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_125 . CDS 43677 43868 . + 0 ID=Phyra84791;Parent=Phyra84791;rank=3 scaffold_125 . exon 43677 43868 . + . ID=Phyra84791.3;Parent=Phyra84791;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_125 . CDS 43900 43952 . + 0 ID=Phyra84791;Parent=Phyra84791;rank=4 scaffold_125 . exon 43900 43952 . + . ID=Phyra84791.4;Parent=Phyra84791;constitutive=1;ensembl_phase=1;rank=4 scaffold_125 ensembl protein_coding_gene 45647 46489 . - . ID=Phyra84792;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000016;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 45647 46489 . - . ID=Phyra84792;Parent=Phyra84792;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 45647 46489 . - 0 ID=Phyra84792;Parent=Phyra84792;rank=1 scaffold_125 . exon 45647 46489 . - . ID=Phyra84792.1;Parent=Phyra84792;constitutive=1;rank=1 scaffold_125 . biological_region 46818 46818 0.999 - . logic_name=eponine scaffold_125 . biological_region 50846 50849 0.999 + . logic_name=eponine scaffold_125 . biological_region 54775 54778 0.999 + . logic_name=eponine scaffold_125 ensembl protein_coding_gene 47021 48327 . + . ID=Phyra84793;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000017;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 47021 48327 . + . ID=Phyra84793;Parent=Phyra84793;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 47021 47033 . + 0 ID=Phyra84793;Parent=Phyra84793;rank=1 scaffold_125 . exon 47021 47033 . + . ID=Phyra84793.1;Parent=Phyra84793;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_125 . CDS 47145 47969 . + 0 ID=Phyra84793;Parent=Phyra84793;rank=2 scaffold_125 . exon 47145 47969 . + . ID=Phyra84793.2;Parent=Phyra84793;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_125 . CDS 48052 48243 . + 0 ID=Phyra84793;Parent=Phyra84793;rank=3 scaffold_125 . exon 48052 48243 . + . ID=Phyra84793.3;Parent=Phyra84793;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_125 . CDS 48275 48327 . + 0 ID=Phyra84793;Parent=Phyra84793;rank=4 scaffold_125 . exon 48275 48327 . + . ID=Phyra84793.4;Parent=Phyra84793;constitutive=1;ensembl_phase=1;rank=4 scaffold_125 ensembl protein_coding_gene 50022 51023 . - . ID=Phyra84794;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000018;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 50022 51023 . - . ID=Phyra84794;Parent=Phyra84794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 50022 51023 . - 0 ID=Phyra84794;Parent=Phyra84794;rank=1 scaffold_125 . exon 50022 51023 . - . ID=Phyra84794.1;Parent=Phyra84794;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 52984 53832 . - . ID=Phyra84796;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000020;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 52984 53832 . - . ID=Phyra84796;Parent=Phyra84796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 52984 53832 . - 0 ID=Phyra84796;Parent=Phyra84796;rank=1 scaffold_125 . exon 52984 53832 . - . ID=Phyra84796.1;Parent=Phyra84796;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 54476 55348 . - . ID=Phyra84797;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000021;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 54476 55348 . - . ID=Phyra84797;Parent=Phyra84797;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 54476 55348 . - 0 ID=Phyra84797;Parent=Phyra84797;rank=1 scaffold_125 . exon 54476 55348 . - . ID=Phyra84797.1;Parent=Phyra84797;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 51209 52664 . + . ID=Phyra96941;biotype=protein_coding;external_name=C_scaffold_125000007;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 51209 52664 . + . ID=Phyra96941;Parent=Phyra96941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 51209 51559 . + 0 ID=Phyra96941;Parent=Phyra96941;rank=1 scaffold_125 . exon 51209 51559 . + . ID=Phyra96941.1;Parent=Phyra96941;constitutive=1;rank=1 scaffold_125 . CDS 51599 51672 . + 0 ID=Phyra96941;Parent=Phyra96941;rank=2 scaffold_125 . exon 51599 51672 . + . ID=Phyra96941.2;Parent=Phyra96941;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_125 . CDS 51739 52000 . + 0 ID=Phyra96941;Parent=Phyra96941;rank=3 scaffold_125 . exon 51739 52000 . + . ID=Phyra96941.3;Parent=Phyra96941;constitutive=1;ensembl_phase=2;rank=3 scaffold_125 . CDS 52343 52561 . + 0 ID=Phyra96941;Parent=Phyra96941;rank=4 scaffold_125 . exon 52343 52561 . + . ID=Phyra96941.4;Parent=Phyra96941;constitutive=1;rank=4 scaffold_125 . CDS 52629 52664 . + 0 ID=Phyra96941;Parent=Phyra96941;rank=5 scaffold_125 . exon 52629 52664 . + . ID=Phyra96941.5;Parent=Phyra96941;constitutive=1;rank=5 scaffold_125 . repeat_region 59921 63531 . ? . description=dust scaffold_125 ensembl protein_coding_gene 59382 59918 . + . ID=Phyra40789;biotype=protein_coding;external_name=gwEuk.125.33.1;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 59382 59918 . + . ID=Phyra40789;Parent=Phyra40789;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 59382 59918 . + 0 ID=Phyra40789;Parent=Phyra40789;rank=1 scaffold_125 . exon 59382 59918 . + . ID=Phyra40789.1;Parent=Phyra40789;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 63832 65784 . - . ID=Phyra40791;biotype=protein_coding;external_name=gwEuk.125.35.1;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 63832 65784 . - . ID=Phyra40791;Parent=Phyra40791;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 63832 65684 . - 0 ID=Phyra40791;Parent=Phyra40791;rank=2 scaffold_125 . exon 63832 65684 . - . ID=Phyra40791.2;Parent=Phyra40791;constitutive=1;ensembl_phase=1;rank=2 scaffold_125 . CDS 65745 65784 . - 0 ID=Phyra40791;Parent=Phyra40791;rank=1 scaffold_125 ensembl protein_coding_gene 56136 56648 . - . ID=Phyra84798;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000022;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 56136 56648 . - . ID=Phyra84798;Parent=Phyra84798;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 56136 56648 . - 0 ID=Phyra84798;Parent=Phyra84798;rank=1 scaffold_125 . exon 56136 56648 . - . ID=Phyra84798.1;Parent=Phyra84798;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 57458 57991 . - . ID=Phyra84799;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000023;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 57458 57991 . - . ID=Phyra84799;Parent=Phyra84799;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 57458 57991 . - 0 ID=Phyra84799;Parent=Phyra84799;rank=1 scaffold_125 . exon 57458 57991 . - . ID=Phyra84799.1;Parent=Phyra84799;constitutive=1;rank=1 scaffold_125 . repeat_region 65178 65204 . ? . description=trf scaffold_125 . repeat_region 66319 66338 . ? . description=trf scaffold_125 . biological_region 67646 67648 0.999 + . logic_name=eponine scaffold_125 . biological_region 68608 68612 0.999 - . logic_name=eponine scaffold_125 . biological_region 69298 69301 0.999 + . logic_name=eponine scaffold_125 . exon 65745 65784 . - . ID=Phyra40791.1;Parent=Phyra40791;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_125 ensembl protein_coding_gene 66872 73938 . - . ID=Phyra96943;biotype=protein_coding;external_name=C_scaffold_125000009;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 66872 73938 . - . ID=Phyra96943;Parent=Phyra96943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 66872 67610 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=18 scaffold_125 . exon 66872 67610 . - . ID=Phyra96943.18;Parent=Phyra96943;constitutive=1;ensembl_phase=2;rank=18 scaffold_125 . CDS 67644 68309 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=17 scaffold_125 . exon 67644 68309 . - . ID=Phyra96943.17;Parent=Phyra96943;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=17 scaffold_125 . CDS 68590 68804 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=16 scaffold_125 . exon 68590 68804 . - . ID=Phyra96943.16;Parent=Phyra96943;constitutive=1;ensembl_end_phase=2;rank=16 scaffold_125 . CDS 68872 69001 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=15 scaffold_125 . exon 68872 69001 . - . ID=Phyra96943.15;Parent=Phyra96943;constitutive=1;ensembl_phase=2;rank=15 scaffold_125 . CDS 69100 69155 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=14 scaffold_125 . exon 69100 69155 . - . ID=Phyra96943.14;Parent=Phyra96943;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_125 . CDS 69234 69815 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=13 scaffold_125 . exon 69234 69815 . - . ID=Phyra96943.13;Parent=Phyra96943;constitutive=1;rank=13 scaffold_125 . CDS 69888 70004 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=12 scaffold_125 . exon 69888 70004 . - . ID=Phyra96943.12;Parent=Phyra96943;constitutive=1;rank=12 scaffold_125 . CDS 70134 70285 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=11 scaffold_125 . exon 70134 70285 . - . ID=Phyra96943.11;Parent=Phyra96943;constitutive=1;ensembl_phase=1;rank=11 scaffold_125 . CDS 70325 70868 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=10 scaffold_125 . exon 70325 70868 . - . ID=Phyra96943.10;Parent=Phyra96943;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_125 . CDS 71377 71459 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=9 scaffold_125 . exon 71377 71459 . - . ID=Phyra96943.9;Parent=Phyra96943;constitutive=1;ensembl_phase=1;rank=9 scaffold_125 . CDS 71530 71686 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=8 scaffold_125 . exon 71530 71686 . - . ID=Phyra96943.8;Parent=Phyra96943;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_125 . CDS 71767 71844 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=7 scaffold_125 . exon 71767 71844 . - . ID=Phyra96943.7;Parent=Phyra96943;constitutive=1;rank=7 scaffold_125 . CDS 71974 72077 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=6 scaffold_125 . exon 71974 72077 . - . ID=Phyra96943.6;Parent=Phyra96943;constitutive=1;ensembl_phase=1;rank=6 scaffold_125 . CDS 72150 72420 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=5 scaffold_125 . exon 72150 72420 . - . ID=Phyra96943.5;Parent=Phyra96943;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_125 . CDS 72472 72549 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=4 scaffold_125 . exon 72472 72549 . - . ID=Phyra96943.4;Parent=Phyra96943;constitutive=1;rank=4 scaffold_125 . CDS 72647 72746 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=3 scaffold_125 . exon 72647 72746 . - . ID=Phyra96943.3;Parent=Phyra96943;constitutive=1;ensembl_phase=2;rank=3 scaffold_125 . CDS 72881 73345 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=2 scaffold_125 . exon 72881 73345 . - . ID=Phyra96943.2;Parent=Phyra96943;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_125 . CDS 73766 73938 . - 0 ID=Phyra96943;Parent=Phyra96943;rank=1 scaffold_125 . exon 73766 73938 . - . ID=Phyra96943.1;Parent=Phyra96943;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_125 . repeat_region 74480 74487 . ? . description=dust scaffold_125 ensembl protein_coding_gene 82633 84117 . - . ID=Phyra72277;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_125000005;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 82633 84117 . - . ID=Phyra72277;Parent=Phyra72277;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 82633 84117 . - 0 ID=Phyra72277;Parent=Phyra72277;rank=1 scaffold_125 . exon 82633 84117 . - . ID=Phyra72277.1;Parent=Phyra72277;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 74732 75506 . - . ID=Phyra96944;biotype=protein_coding;external_name=C_scaffold_125000010;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 74732 75506 . - . ID=Phyra96944;Parent=Phyra96944;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 74732 74821 . - 0 ID=Phyra96944;Parent=Phyra96944;rank=3 scaffold_125 . exon 74732 74821 . - . ID=Phyra96944.3;Parent=Phyra96944;constitutive=1;rank=3 scaffold_125 . CDS 74857 75064 . - 0 ID=Phyra96944;Parent=Phyra96944;rank=2 scaffold_125 . exon 74857 75064 . - . ID=Phyra96944.2;Parent=Phyra96944;constitutive=1;ensembl_phase=2;rank=2 scaffold_125 . CDS 75139 75506 . - 0 ID=Phyra96944;Parent=Phyra96944;rank=1 scaffold_125 . exon 75139 75506 . - . ID=Phyra96944.1;Parent=Phyra96944;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_125 ensembl protein_coding_gene 75794 78693 . + . ID=Phyra96945;biotype=protein_coding;external_name=C_scaffold_125000011;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 75794 78693 . + . ID=Phyra96945;Parent=Phyra96945;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 75794 76764 . + 0 ID=Phyra96945;Parent=Phyra96945;rank=1 scaffold_125 . exon 75794 76764 . + . ID=Phyra96945.1;Parent=Phyra96945;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_125 . CDS 76831 77038 . + 0 ID=Phyra96945;Parent=Phyra96945;rank=2 scaffold_125 . exon 76831 77038 . + . ID=Phyra96945.2;Parent=Phyra96945;constitutive=1;ensembl_phase=2;rank=2 scaffold_125 . CDS 77081 77199 . + 0 ID=Phyra96945;Parent=Phyra96945;rank=3 scaffold_125 . exon 77081 77199 . + . ID=Phyra96945.3;Parent=Phyra96945;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_125 . CDS 77357 77435 . + 0 ID=Phyra96945;Parent=Phyra96945;rank=4 scaffold_125 . exon 77357 77435 . + . ID=Phyra96945.4;Parent=Phyra96945;constitutive=1;ensembl_phase=2;rank=4 scaffold_125 . CDS 77478 77606 . + 0 ID=Phyra96945;Parent=Phyra96945;rank=5 scaffold_125 . exon 77478 77606 . + . ID=Phyra96945.5;Parent=Phyra96945;constitutive=1;rank=5 scaffold_125 . CDS 77652 78086 . + 0 ID=Phyra96945;Parent=Phyra96945;rank=6 scaffold_125 . exon 77652 78086 . + . ID=Phyra96945.6;Parent=Phyra96945;constitutive=1;rank=6 scaffold_125 . CDS 78148 78351 . + 0 ID=Phyra96945;Parent=Phyra96945;rank=7 scaffold_125 . exon 78148 78351 . + . ID=Phyra96945.7;Parent=Phyra96945;constitutive=1;rank=7 scaffold_125 . CDS 78426 78603 . + 0 ID=Phyra96945;Parent=Phyra96945;rank=8 scaffold_125 . exon 78426 78603 . + . ID=Phyra96945.8;Parent=Phyra96945;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_125 . CDS 78683 78693 . + 0 ID=Phyra96945;Parent=Phyra96945;rank=9 scaffold_125 . exon 78683 78693 . + . ID=Phyra96945.9;Parent=Phyra96945;constitutive=1;ensembl_phase=1;rank=9 scaffold_125 . biological_region 87678 87683 0.999 + . logic_name=eponine scaffold_125 . biological_region 87693 87696 0.999 + . logic_name=eponine scaffold_125 . biological_region 87783 87785 0.999 - . logic_name=eponine scaffold_125 . biological_region 88503 88506 0.999 + . logic_name=eponine scaffold_125 . biological_region 88646 88649 0.999 + . logic_name=eponine scaffold_125 . biological_region 89390 89393 0.999 + . logic_name=eponine scaffold_125 . biological_region 89586 89589 0.999 - . logic_name=eponine scaffold_125 ensembl protein_coding_gene 92933 94513 . - . ID=Phyra40807;biotype=protein_coding;external_name=gwEuk.125.51.1;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 92933 94513 . - . ID=Phyra40807;Parent=Phyra40807;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 92933 93082 . - 0 ID=Phyra40807;Parent=Phyra40807;rank=7 scaffold_125 . exon 92933 93082 . - . ID=Phyra40807.7;Parent=Phyra40807;constitutive=1;rank=7 scaffold_125 . CDS 93127 93243 . - 0 ID=Phyra40807;Parent=Phyra40807;rank=6 scaffold_125 . CDS 93330 93617 . - 0 ID=Phyra40807;Parent=Phyra40807;rank=5 scaffold_125 . CDS 93697 93807 . - 0 ID=Phyra40807;Parent=Phyra40807;rank=4 scaffold_125 . CDS 93892 94165 . - 0 ID=Phyra40807;Parent=Phyra40807;rank=3 scaffold_125 . CDS 94237 94369 . - 0 ID=Phyra40807;Parent=Phyra40807;rank=2 scaffold_125 . CDS 94438 94513 . - 0 ID=Phyra40807;Parent=Phyra40807;rank=1 scaffold_125 ensembl protein_coding_gene 84344 85522 . + . ID=Phyra72278;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_125000006;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 84344 85522 . + . ID=Phyra72278;Parent=Phyra72278;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 84344 85522 . + 0 ID=Phyra72278;Parent=Phyra72278;rank=1 scaffold_125 . exon 84344 85522 . + . ID=Phyra72278.1;Parent=Phyra72278;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 85883 87865 . - . ID=Phyra84807;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000031;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 85883 87865 . - . ID=Phyra84807;Parent=Phyra84807;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 85883 87865 . - 0 ID=Phyra84807;Parent=Phyra84807;rank=1 scaffold_125 . exon 85883 87865 . - . ID=Phyra84807.1;Parent=Phyra84807;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 91378 92663 . + . ID=Phyra84809;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000033;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 91378 92663 . + . ID=Phyra84809;Parent=Phyra84809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 91378 91585 . + 0 ID=Phyra84809;Parent=Phyra84809;rank=1 scaffold_125 . exon 91378 91585 . + . ID=Phyra84809.1;Parent=Phyra84809;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_125 . CDS 91651 91898 . + 0 ID=Phyra84809;Parent=Phyra84809;rank=2 scaffold_125 . exon 91651 91898 . + . ID=Phyra84809.2;Parent=Phyra84809;constitutive=1;ensembl_phase=1;rank=2 scaffold_125 . CDS 91964 92024 . + 0 ID=Phyra84809;Parent=Phyra84809;rank=3 scaffold_125 . exon 91964 92024 . + . ID=Phyra84809.3;Parent=Phyra84809;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_125 . CDS 92103 92205 . + 0 ID=Phyra84809;Parent=Phyra84809;rank=4 scaffold_125 . exon 92103 92205 . + . ID=Phyra84809.4;Parent=Phyra84809;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_125 . CDS 92297 92663 . + 0 ID=Phyra84809;Parent=Phyra84809;rank=5 scaffold_125 . exon 92297 92663 . + . ID=Phyra84809.5;Parent=Phyra84809;constitutive=1;ensembl_phase=2;rank=5 scaffold_125 ensembl protein_coding_gene 88286 88543 . + . ID=Phyra96947;biotype=protein_coding;external_name=C_scaffold_125000013;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 88286 88543 . + . ID=Phyra96947;Parent=Phyra96947;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 88286 88378 . + 0 ID=Phyra96947;Parent=Phyra96947;rank=1 scaffold_125 . exon 88286 88378 . + . ID=Phyra96947.1;Parent=Phyra96947;constitutive=1;rank=1 scaffold_125 . CDS 88442 88543 . + 0 ID=Phyra96947;Parent=Phyra96947;rank=2 scaffold_125 . exon 88442 88543 . + . ID=Phyra96947.2;Parent=Phyra96947;constitutive=1;rank=2 scaffold_125 ensembl protein_coding_gene 88730 91275 . - . ID=Phyra96948;biotype=protein_coding;external_name=C_scaffold_125000014;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 88730 91275 . - . ID=Phyra96948;Parent=Phyra96948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 88730 89155 . - 0 ID=Phyra96948;Parent=Phyra96948;rank=7 scaffold_125 . exon 88730 89155 . - . ID=Phyra96948.7;Parent=Phyra96948;constitutive=1;rank=7 scaffold_125 . CDS 89332 89445 . - 0 ID=Phyra96948;Parent=Phyra96948;rank=6 scaffold_125 . exon 89332 89445 . - . ID=Phyra96948.6;Parent=Phyra96948;constitutive=1;rank=6 scaffold_125 . CDS 89797 90172 . - 0 ID=Phyra96948;Parent=Phyra96948;rank=5 scaffold_125 . exon 89797 90172 . - . ID=Phyra96948.5;Parent=Phyra96948;constitutive=1;ensembl_phase=2;rank=5 scaffold_125 . CDS 90242 90423 . - 0 ID=Phyra96948;Parent=Phyra96948;rank=4 scaffold_125 . exon 90242 90423 . - . ID=Phyra96948.4;Parent=Phyra96948;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_125 . CDS 90496 90819 . - 0 ID=Phyra96948;Parent=Phyra96948;rank=3 scaffold_125 . exon 90496 90819 . - . ID=Phyra96948.3;Parent=Phyra96948;constitutive=1;rank=3 scaffold_125 . CDS 90894 91103 . - 0 ID=Phyra96948;Parent=Phyra96948;rank=2 scaffold_125 . exon 90894 91103 . - . ID=Phyra96948.2;Parent=Phyra96948;constitutive=1;rank=2 scaffold_125 . CDS 91168 91275 . - 0 ID=Phyra96948;Parent=Phyra96948;rank=1 scaffold_125 . exon 91168 91275 . - . ID=Phyra96948.1;Parent=Phyra96948;constitutive=1;rank=1 scaffold_125 . repeat_region 95596 95641 . ? . description=trf scaffold_125 . repeat_region 99062 99079 . ? . description=dust scaffold_125 . repeat_region 99063 99083 . ? . description=trf scaffold_125 . repeat_region 101266 101273 . ? . description=dust scaffold_125 . exon 93127 93243 . - . ID=Phyra40807.6;Parent=Phyra40807;constitutive=1;rank=6 scaffold_125 . exon 93330 93617 . - . ID=Phyra40807.5;Parent=Phyra40807;constitutive=1;rank=5 scaffold_125 . exon 93697 93807 . - . ID=Phyra40807.4;Parent=Phyra40807;constitutive=1;rank=4 scaffold_125 . exon 93892 94165 . - . ID=Phyra40807.3;Parent=Phyra40807;constitutive=1;ensembl_phase=2;rank=3 scaffold_125 . exon 94237 94369 . - . ID=Phyra40807.2;Parent=Phyra40807;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_125 . exon 94438 94513 . - . ID=Phyra40807.1;Parent=Phyra40807;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_125 ensembl protein_coding_gene 95278 96051 . + . ID=Phyra84811;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000035;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 95278 96051 . + . ID=Phyra84811;Parent=Phyra84811;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 95278 96051 . + 0 ID=Phyra84811;Parent=Phyra84811;rank=1 scaffold_125 . exon 95278 96051 . + . ID=Phyra84811.1;Parent=Phyra84811;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 96271 96749 . + . ID=Phyra84812;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000036;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 96271 96749 . + . ID=Phyra84812;Parent=Phyra84812;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 96271 96345 . + 0 ID=Phyra84812;Parent=Phyra84812;rank=1 scaffold_125 . exon 96271 96345 . + . ID=Phyra84812.1;Parent=Phyra84812;constitutive=1;rank=1 scaffold_125 . CDS 96417 96749 . + 0 ID=Phyra84812;Parent=Phyra84812;rank=2 scaffold_125 . exon 96417 96749 . + . ID=Phyra84812.2;Parent=Phyra84812;constitutive=1;rank=2 scaffold_125 ensembl protein_coding_gene 99004 100282 . + . ID=Phyra84813;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_125000037;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 99004 100282 . + . ID=Phyra84813;Parent=Phyra84813;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 99004 99053 . + 0 ID=Phyra84813;Parent=Phyra84813;rank=1 scaffold_125 . exon 99004 99053 . + . ID=Phyra84813.1;Parent=Phyra84813;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_125 . CDS 99143 99510 . + 0 ID=Phyra84813;Parent=Phyra84813;rank=2 scaffold_125 . exon 99143 99510 . + . ID=Phyra84813.2;Parent=Phyra84813;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_125 . CDS 99594 100282 . + 0 ID=Phyra84813;Parent=Phyra84813;rank=3 scaffold_125 . exon 99594 100282 . + . ID=Phyra84813.3;Parent=Phyra84813;constitutive=1;ensembl_phase=1;rank=3 scaffold_125 . biological_region 103038 103040 0.999 + . logic_name=eponine scaffold_125 . biological_region 104967 104971 0.999 + . logic_name=eponine scaffold_125 . biological_region 104974 104975 0.999 - . logic_name=eponine scaffold_125 . biological_region 107508 107510 0.999 - . logic_name=eponine scaffold_125 ensembl protein_coding_gene 102903 107123 . + . ID=Phyra96951;biotype=protein_coding;external_name=C_scaffold_125000017;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 102903 107123 . + . ID=Phyra96951;Parent=Phyra96951;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 102903 104412 . + 0 ID=Phyra96951;Parent=Phyra96951;rank=1 scaffold_125 . exon 102903 104412 . + . ID=Phyra96951.1;Parent=Phyra96951;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_125 . CDS 104706 105088 . + 0 ID=Phyra96951;Parent=Phyra96951;rank=2 scaffold_125 . exon 104706 105088 . + . ID=Phyra96951.2;Parent=Phyra96951;constitutive=1;ensembl_phase=1;rank=2 scaffold_125 . CDS 105140 105254 . + 0 ID=Phyra96951;Parent=Phyra96951;rank=3 scaffold_125 . exon 105140 105254 . + . ID=Phyra96951.3;Parent=Phyra96951;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_125 . CDS 105518 105735 . + 0 ID=Phyra96951;Parent=Phyra96951;rank=4 scaffold_125 . exon 105518 105735 . + . ID=Phyra96951.4;Parent=Phyra96951;constitutive=1;ensembl_phase=1;rank=4 scaffold_125 . CDS 105804 105986 . + 0 ID=Phyra96951;Parent=Phyra96951;rank=5 scaffold_125 . exon 105804 105986 . + . ID=Phyra96951.5;Parent=Phyra96951;constitutive=1;rank=5 scaffold_125 . CDS 106072 106140 . + 0 ID=Phyra96951;Parent=Phyra96951;rank=6 scaffold_125 . exon 106072 106140 . + . ID=Phyra96951.6;Parent=Phyra96951;constitutive=1;rank=6 scaffold_125 . CDS 106224 106651 . + 0 ID=Phyra96951;Parent=Phyra96951;rank=7 scaffold_125 . exon 106224 106651 . + . ID=Phyra96951.7;Parent=Phyra96951;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_125 . CDS 106728 106773 . + 0 ID=Phyra96951;Parent=Phyra96951;rank=8 scaffold_125 . exon 106728 106773 . + . ID=Phyra96951.8;Parent=Phyra96951;constitutive=1;ensembl_phase=2;rank=8 scaffold_125 . CDS 106852 106900 . + 0 ID=Phyra96951;Parent=Phyra96951;rank=9 scaffold_125 . exon 106852 106900 . + . ID=Phyra96951.9;Parent=Phyra96951;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_125 . CDS 106966 107123 . + 0 ID=Phyra96951;Parent=Phyra96951;rank=10 scaffold_125 . exon 106966 107123 . + . ID=Phyra96951.10;Parent=Phyra96951;constitutive=1;ensembl_phase=1;rank=10 scaffold_125 ensembl protein_coding_gene 107357 109065 . - . ID=Phyra96952;biotype=protein_coding;external_name=C_scaffold_125000018;logic_name=jgi_phyra1 scaffold_125 ensembl transcript 107357 109065 . - . ID=Phyra96952;Parent=Phyra96952;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_125 . CDS 107357 108030 . - 0 ID=Phyra96952;Parent=Phyra96952;rank=3 scaffold_125 . exon 107357 108030 . - . ID=Phyra96952.3;Parent=Phyra96952;constitutive=1;ensembl_phase=1;rank=3 scaffold_125 . CDS 108383 108445 . - 0 ID=Phyra96952;Parent=Phyra96952;rank=2 scaffold_125 . exon 108383 108445 . - . ID=Phyra96952.2;Parent=Phyra96952;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_125 . CDS 108802 109063 . - 0 ID=Phyra96952;Parent=Phyra96952;rank=1 scaffold_125 . exon 108802 109065 . - . ID=Phyra96952.1;Parent=Phyra96952;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_123 1 117378 scaffold_123 . biological_region 2048 2048 0.999 + . logic_name=eponine scaffold_123 . biological_region 2596 2601 0.999 + . logic_name=eponine scaffold_123 . biological_region 2600 2605 0.999 - . logic_name=eponine scaffold_123 . biological_region 2621 2623 0.999 + . logic_name=eponine scaffold_123 . repeat_region 4014 4161 . ? . description=trf scaffold_123 . repeat_region 4273 4414 . ? . description=dust scaffold_123 . repeat_region 5358 6726 . ? . description=dust scaffold_123 . repeat_region 9118 10115 . ? . description=dust scaffold_123 ensembl protein_coding_gene 10353 12931 . - . ID=Phyra84729;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000001;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 10353 12931 . - . ID=Phyra84729;Parent=Phyra84729;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 10353 10366 . - 0 ID=Phyra84729;Parent=Phyra84729;rank=4 scaffold_123 . exon 10353 10366 . - . ID=Phyra84729.4;Parent=Phyra84729;constitutive=1;ensembl_phase=1;rank=4 scaffold_123 . CDS 10416 11019 . - 0 ID=Phyra84729;Parent=Phyra84729;rank=3 scaffold_123 . exon 10416 11019 . - . ID=Phyra84729.3;Parent=Phyra84729;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_123 . CDS 11827 12815 . - 0 ID=Phyra84729;Parent=Phyra84729;rank=2 scaffold_123 . exon 11827 12815 . - . ID=Phyra84729.2;Parent=Phyra84729;constitutive=1;ensembl_phase=1;rank=2 scaffold_123 . CDS 12853 12931 . - 0 ID=Phyra84729;Parent=Phyra84729;rank=1 scaffold_123 . exon 12853 12931 . - . ID=Phyra84729.1;Parent=Phyra84729;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_123 ensembl protein_coding_gene 16015 22197 . - . ID=Phyra84730;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000002;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 16015 22197 . - . ID=Phyra84730;Parent=Phyra84730;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 16015 21210 . - 0 ID=Phyra84730;Parent=Phyra84730;rank=4 scaffold_123 . exon 16015 21210 . - . ID=Phyra84730.4;Parent=Phyra84730;constitutive=1;rank=4 scaffold_123 . CDS 21423 21568 . - 0 ID=Phyra84730;Parent=Phyra84730;rank=3 scaffold_123 . CDS 21638 21721 . - 0 ID=Phyra84730;Parent=Phyra84730;rank=2 scaffold_123 . CDS 21792 22197 . - 0 ID=Phyra84730;Parent=Phyra84730;rank=1 scaffold_123 . biological_region 22034 22035 0.999 - . logic_name=eponine scaffold_123 . biological_region 22756 22761 0.999 + . logic_name=eponine scaffold_123 . biological_region 24930 24933 0.999 - . logic_name=eponine scaffold_123 . repeat_region 25469 25476 . ? . description=dust scaffold_123 . repeat_region 25478 25491 . ? . description=dust scaffold_123 . biological_region 26043 26046 0.999 - . logic_name=eponine scaffold_123 . biological_region 26473 26476 0.999 - . logic_name=eponine scaffold_123 . biological_region 26494 26495 0.999 + . logic_name=eponine scaffold_123 . biological_region 26531 26533 0.999 + . logic_name=eponine scaffold_123 . biological_region 26770 26774 0.999 + . logic_name=eponine scaffold_123 ensembl pseudogene 25866 26980 . + . ID=Phyra40667;biotype=pseudogene;external_name=gwEuk.123.4.1;logic_name=jgi_phyra1 scaffold_123 ensembl pseudogene 25866 26980 . + . ID=Phyra40667;Parent=Phyra40667;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_123 . exon 25866 26980 . + . ID=Phyra40667.1;Parent=Phyra40667;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_123 ensembl protein_coding_gene 27233 27520 . + . ID=Phyra40670;biotype=protein_coding;external_name=gwEuk.123.7.1;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 27233 27520 . + . ID=Phyra40670;Parent=Phyra40670;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 27233 27520 . + 0 ID=Phyra40670;Parent=Phyra40670;rank=1 scaffold_123 . exon 27233 27520 . + . ID=Phyra40670.1;Parent=Phyra40670;constitutive=1;rank=1 scaffold_123 . exon 21423 21568 . - . ID=Phyra84730.3;Parent=Phyra84730;constitutive=1;ensembl_phase=1;rank=3 scaffold_123 . exon 21638 21721 . - . ID=Phyra84730.2;Parent=Phyra84730;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_123 . exon 21792 22197 . - . ID=Phyra84730.1;Parent=Phyra84730;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_123 ensembl protein_coding_gene 22378 23736 . + . ID=Phyra84731;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000003;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 22378 23736 . + . ID=Phyra84731;Parent=Phyra84731;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 22378 22629 . + 0 ID=Phyra84731;Parent=Phyra84731;rank=1 scaffold_123 . exon 22378 22629 . + . ID=Phyra84731.1;Parent=Phyra84731;constitutive=1;rank=1 scaffold_123 . CDS 22714 23112 . + 0 ID=Phyra84731;Parent=Phyra84731;rank=2 scaffold_123 . exon 22714 23112 . + . ID=Phyra84731.2;Parent=Phyra84731;constitutive=1;rank=2 scaffold_123 . CDS 23197 23371 . + 0 ID=Phyra84731;Parent=Phyra84731;rank=3 scaffold_123 . exon 23197 23371 . + . ID=Phyra84731.3;Parent=Phyra84731;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_123 . CDS 23447 23736 . + 0 ID=Phyra84731;Parent=Phyra84731;rank=4 scaffold_123 . exon 23447 23736 . + . ID=Phyra84731.4;Parent=Phyra84731;constitutive=1;ensembl_phase=1;rank=4 scaffold_123 ensembl protein_coding_gene 24437 25234 . + . ID=Phyra84732;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000004;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 24437 25234 . + . ID=Phyra84732;Parent=Phyra84732;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 24437 25234 . + 0 ID=Phyra84732;Parent=Phyra84732;rank=1 scaffold_123 . exon 24437 25234 . + . ID=Phyra84732.1;Parent=Phyra84732;constitutive=1;rank=1 scaffold_123 ensembl protein_coding_gene 27736 28128 . - . ID=Phyra84735;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000007;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 27736 28128 . - . ID=Phyra84735;Parent=Phyra84735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 27736 28128 . - 0 ID=Phyra84735;Parent=Phyra84735;rank=1 scaffold_123 . exon 27736 28128 . - . ID=Phyra84735.1;Parent=Phyra84735;constitutive=1;rank=1 scaffold_123 ensembl protein_coding_gene 28447 30105 . - . ID=Phyra84736;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000008;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 28447 30105 . - . ID=Phyra84736;Parent=Phyra84736;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 28447 30105 . - 0 ID=Phyra84736;Parent=Phyra84736;rank=1 scaffold_123 . exon 28447 30105 . - . ID=Phyra84736.1;Parent=Phyra84736;constitutive=1;rank=1 scaffold_123 . repeat_region 30218 30258 . ? . description=trf scaffold_123 ensembl protein_coding_gene 36557 36733 . + . ID=Phyra40681;biotype=protein_coding;external_name=gwEuk.123.18.1;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 36557 36733 . + . ID=Phyra40681;Parent=Phyra40681;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 36557 36733 . + 0 ID=Phyra40681;Parent=Phyra40681;rank=1 scaffold_123 . exon 36557 36733 . + . ID=Phyra40681.1;Parent=Phyra40681;constitutive=1;rank=1 scaffold_123 ensembl protein_coding_gene 30611 31338 . + . ID=Phyra84737;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000009;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 30611 31338 . + . ID=Phyra84737;Parent=Phyra84737;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 30611 30831 . + 0 ID=Phyra84737;Parent=Phyra84737;rank=1 scaffold_123 . exon 30611 30831 . + . ID=Phyra84737.1;Parent=Phyra84737;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_123 . CDS 30918 31338 . + 0 ID=Phyra84737;Parent=Phyra84737;rank=2 scaffold_123 . exon 30918 31338 . + . ID=Phyra84737.2;Parent=Phyra84737;constitutive=1;ensembl_phase=2;rank=2 scaffold_123 ensembl protein_coding_gene 34273 36014 . + . ID=Phyra84738;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000010;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 34273 36014 . + . ID=Phyra84738;Parent=Phyra84738;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 34273 34320 . + 0 ID=Phyra84738;Parent=Phyra84738;rank=1 scaffold_123 . exon 34273 34320 . + . ID=Phyra84738.1;Parent=Phyra84738;constitutive=1;rank=1 scaffold_123 . CDS 34394 34561 . + 0 ID=Phyra84738;Parent=Phyra84738;rank=2 scaffold_123 . exon 34394 34561 . + . ID=Phyra84738.2;Parent=Phyra84738;constitutive=1;rank=2 scaffold_123 . CDS 34620 36014 . + 0 ID=Phyra84738;Parent=Phyra84738;rank=3 scaffold_123 . exon 34620 36014 . + . ID=Phyra84738.3;Parent=Phyra84738;constitutive=1;rank=3 scaffold_123 ensembl protein_coding_gene 37512 39028 . - . ID=Phyra84739;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000011;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 37512 39028 . - . ID=Phyra84739;Parent=Phyra84739;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 37512 37643 . - 0 ID=Phyra84739;Parent=Phyra84739;rank=3 scaffold_123 . exon 37512 37643 . - . ID=Phyra84739.3;Parent=Phyra84739;constitutive=1;rank=3 scaffold_123 . CDS 37716 38937 . - 0 ID=Phyra84739;Parent=Phyra84739;rank=2 scaffold_123 . exon 37716 38937 . - . ID=Phyra84739.2;Parent=Phyra84739;constitutive=1;ensembl_phase=2;rank=2 scaffold_123 . CDS 38997 39028 . - 0 ID=Phyra84739;Parent=Phyra84739;rank=1 scaffold_123 . exon 38997 39028 . - . ID=Phyra84739.1;Parent=Phyra84739;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_123 . biological_region 40738 40740 0.999 - . logic_name=eponine scaffold_123 . biological_region 40798 40801 0.999 + . logic_name=eponine scaffold_123 . biological_region 44884 44887 0.999 + . logic_name=eponine scaffold_123 . biological_region 48521 48524 0.999 - . logic_name=eponine scaffold_123 . biological_region 48910 48914 0.999 + . logic_name=eponine scaffold_123 ensembl protein_coding_gene 41785 42435 . + . ID=Phyra40693;biotype=protein_coding;external_name=gwEuk.123.30.1;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 41785 42435 . + . ID=Phyra40693;Parent=Phyra40693;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 41785 41916 . + 0 ID=Phyra40693;Parent=Phyra40693;rank=1 scaffold_123 . exon 41785 41916 . + . ID=Phyra40693.1;Parent=Phyra40693;constitutive=1;rank=1 scaffold_123 . CDS 41989 42435 . + 0 ID=Phyra40693;Parent=Phyra40693;rank=2 scaffold_123 . exon 41989 42435 . + . ID=Phyra40693.2;Parent=Phyra40693;constitutive=1;rank=2 scaffold_123 ensembl protein_coding_gene 47493 48139 . - . ID=Phyra72268;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_123000003;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 47493 48139 . - . ID=Phyra72268;Parent=Phyra72268;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 47493 48008 . - 0 ID=Phyra72268;Parent=Phyra72268;rank=2 scaffold_123 . exon 47493 48008 . - . ID=Phyra72268.2;Parent=Phyra72268;constitutive=1;rank=2 scaffold_123 . CDS 48080 48139 . - 0 ID=Phyra72268;Parent=Phyra72268;rank=1 scaffold_123 . exon 48080 48139 . - . ID=Phyra72268.1;Parent=Phyra72268;constitutive=1;rank=1 scaffold_123 ensembl protein_coding_gene 48427 49551 . + . ID=Phyra72269;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_123000004;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 48427 49551 . + . ID=Phyra72269;Parent=Phyra72269;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 48427 48567 . + 0 ID=Phyra72269;Parent=Phyra72269;rank=1 scaffold_123 . exon 48427 48567 . + . ID=Phyra72269.1;Parent=Phyra72269;constitutive=1;rank=1 scaffold_123 . CDS 48601 49551 . + 0 ID=Phyra72269;Parent=Phyra72269;rank=2 scaffold_123 . exon 48601 49551 . + . ID=Phyra72269.2;Parent=Phyra72269;constitutive=1;rank=2 scaffold_123 ensembl protein_coding_gene 45687 47199 . + . ID=Phyra84742;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000014;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 45687 47199 . + . ID=Phyra84742;Parent=Phyra84742;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 45687 46428 . + 0 ID=Phyra84742;Parent=Phyra84742;rank=1 scaffold_123 . exon 45687 46428 . + . ID=Phyra84742.1;Parent=Phyra84742;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_123 . CDS 46500 46603 . + 0 ID=Phyra84742;Parent=Phyra84742;rank=2 scaffold_123 . exon 46500 46603 . + . ID=Phyra84742.2;Parent=Phyra84742;constitutive=1;ensembl_phase=1;rank=2 scaffold_123 . CDS 46682 46906 . + 0 ID=Phyra84742;Parent=Phyra84742;rank=3 scaffold_123 . exon 46682 46906 . + . ID=Phyra84742.3;Parent=Phyra84742;constitutive=1;rank=3 scaffold_123 . CDS 46973 47071 . + 0 ID=Phyra84742;Parent=Phyra84742;rank=4 scaffold_123 . exon 46973 47071 . + . ID=Phyra84742.4;Parent=Phyra84742;constitutive=1;rank=4 scaffold_123 . CDS 47137 47199 . + 0 ID=Phyra84742;Parent=Phyra84742;rank=5 scaffold_123 . exon 47137 47199 . + . ID=Phyra84742.5;Parent=Phyra84742;constitutive=1;rank=5 scaffold_123 ensembl protein_coding_gene 43027 44982 . - . ID=Phyra96931;biotype=protein_coding;external_name=C_scaffold_123000004;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 43027 44982 . - . ID=Phyra96931;Parent=Phyra96931;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 43027 43036 . - 0 ID=Phyra96931;Parent=Phyra96931;rank=10 scaffold_123 . exon 43027 43036 . - . ID=Phyra96931.10;Parent=Phyra96931;constitutive=1;ensembl_phase=2;rank=10 scaffold_123 . CDS 43242 43482 . - 0 ID=Phyra96931;Parent=Phyra96931;rank=9 scaffold_123 . exon 43242 43482 . - . ID=Phyra96931.9;Parent=Phyra96931;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_123 . CDS 43531 43702 . - 0 ID=Phyra96931;Parent=Phyra96931;rank=8 scaffold_123 . exon 43531 43702 . - . ID=Phyra96931.8;Parent=Phyra96931;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_123 . CDS 43774 43901 . - 0 ID=Phyra96931;Parent=Phyra96931;rank=7 scaffold_123 . exon 43774 43901 . - . ID=Phyra96931.7;Parent=Phyra96931;constitutive=1;ensembl_phase=1;rank=7 scaffold_123 . CDS 43971 44016 . - 0 ID=Phyra96931;Parent=Phyra96931;rank=6 scaffold_123 . exon 43971 44016 . - . ID=Phyra96931.6;Parent=Phyra96931;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_123 . CDS 44079 44210 . - 0 ID=Phyra96931;Parent=Phyra96931;rank=5 scaffold_123 . exon 44079 44210 . - . ID=Phyra96931.5;Parent=Phyra96931;constitutive=1;rank=5 scaffold_123 . CDS 44285 44383 . - 0 ID=Phyra96931;Parent=Phyra96931;rank=4 scaffold_123 . exon 44285 44383 . - . ID=Phyra96931.4;Parent=Phyra96931;constitutive=1;rank=4 scaffold_123 . CDS 44462 44599 . - 0 ID=Phyra96931;Parent=Phyra96931;rank=3 scaffold_123 . exon 44462 44599 . - . ID=Phyra96931.3;Parent=Phyra96931;constitutive=1;rank=3 scaffold_123 . CDS 44674 44818 . - 0 ID=Phyra96931;Parent=Phyra96931;rank=2 scaffold_123 . exon 44674 44818 . - . ID=Phyra96931.2;Parent=Phyra96931;constitutive=1;ensembl_phase=2;rank=2 scaffold_123 . CDS 44870 44982 . - 0 ID=Phyra96931;Parent=Phyra96931;rank=1 scaffold_123 . exon 44870 44982 . - . ID=Phyra96931.1;Parent=Phyra96931;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_123 . repeat_region 53255 53302 . ? . description=trf scaffold_123 . repeat_region 55097 55118 . ? . description=trf scaffold_123 . repeat_region 55139 55146 . ? . description=dust scaffold_123 ensembl protein_coding_gene 50618 51868 . + . ID=Phyra84745;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000017;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 50618 51868 . + . ID=Phyra84745;Parent=Phyra84745;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 50618 50721 . + 0 ID=Phyra84745;Parent=Phyra84745;rank=1 scaffold_123 . exon 50618 50721 . + . ID=Phyra84745.1;Parent=Phyra84745;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_123 . CDS 50771 51171 . + 0 ID=Phyra84745;Parent=Phyra84745;rank=2 scaffold_123 . exon 50771 51171 . + . ID=Phyra84745.2;Parent=Phyra84745;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_123 . CDS 51192 51481 . + 0 ID=Phyra84745;Parent=Phyra84745;rank=3 scaffold_123 . exon 51192 51481 . + . ID=Phyra84745.3;Parent=Phyra84745;constitutive=1;ensembl_phase=1;rank=3 scaffold_123 . CDS 51513 51783 . + 0 ID=Phyra84745;Parent=Phyra84745;rank=4 scaffold_123 . exon 51513 51783 . + . ID=Phyra84745.4;Parent=Phyra84745;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_123 . CDS 51858 51868 . + 0 ID=Phyra84745;Parent=Phyra84745;rank=5 scaffold_123 . exon 51858 51868 . + . ID=Phyra84745.5;Parent=Phyra84745;constitutive=1;ensembl_phase=1;rank=5 scaffold_123 ensembl protein_coding_gene 52536 53519 . - . ID=Phyra84746;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000018;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 52536 53519 . - . ID=Phyra84746;Parent=Phyra84746;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 52536 53519 . - 0 ID=Phyra84746;Parent=Phyra84746;rank=1 scaffold_123 . exon 52536 53519 . - . ID=Phyra84746.1;Parent=Phyra84746;constitutive=1;rank=1 scaffold_123 ensembl protein_coding_gene 54150 54572 . + . ID=Phyra84747;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000019;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 54150 54572 . + . ID=Phyra84747;Parent=Phyra84747;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 54150 54287 . + 0 ID=Phyra84747;Parent=Phyra84747;rank=1 scaffold_123 . exon 54150 54287 . + . ID=Phyra84747.1;Parent=Phyra84747;constitutive=1;rank=1 scaffold_123 . CDS 54351 54572 . + 0 ID=Phyra84747;Parent=Phyra84747;rank=2 scaffold_123 . exon 54351 54572 . + . ID=Phyra84747.2;Parent=Phyra84747;constitutive=1;rank=2 scaffold_123 ensembl protein_coding_gene 54883 60119 . - . ID=Phyra84748;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000020;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 54883 60119 . - . ID=Phyra84748;Parent=Phyra84748;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 54883 55121 . - 0 ID=Phyra84748;Parent=Phyra84748;rank=10 scaffold_123 . exon 54883 55121 . - . ID=Phyra84748.10;Parent=Phyra84748;constitutive=1;ensembl_phase=1;rank=10 scaffold_123 . CDS 55185 55623 . - 0 ID=Phyra84748;Parent=Phyra84748;rank=9 scaffold_123 . exon 55185 55623 . - . ID=Phyra84748.9;Parent=Phyra84748;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_123 . CDS 55795 55915 . - 0 ID=Phyra84748;Parent=Phyra84748;rank=8 scaffold_123 . exon 55795 55915 . - . ID=Phyra84748.8;Parent=Phyra84748;constitutive=1;ensembl_phase=2;rank=8 scaffold_123 . CDS 56289 56315 . - 0 ID=Phyra84748;Parent=Phyra84748;rank=7 scaffold_123 . exon 56289 56315 . - . ID=Phyra84748.7;Parent=Phyra84748;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_123 . CDS 56360 58677 . - 0 ID=Phyra84748;Parent=Phyra84748;rank=6 scaffold_123 . exon 56360 58677 . - . ID=Phyra84748.6;Parent=Phyra84748;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_123 . CDS 58754 58847 . - 0 ID=Phyra84748;Parent=Phyra84748;rank=5 scaffold_123 . CDS 58927 59248 . - 0 ID=Phyra84748;Parent=Phyra84748;rank=4 scaffold_123 . CDS 59614 59755 . - 0 ID=Phyra84748;Parent=Phyra84748;rank=3 scaffold_123 . CDS 59793 59948 . - 0 ID=Phyra84748;Parent=Phyra84748;rank=2 scaffold_123 . CDS 59994 60119 . - 0 ID=Phyra84748;Parent=Phyra84748;rank=1 scaffold_123 . biological_region 59328 59328 0.999 + . logic_name=eponine scaffold_123 . biological_region 60104 60104 0.999 - . logic_name=eponine scaffold_123 . biological_region 63220 63222 0.999 + . logic_name=eponine scaffold_123 . biological_region 63287 63288 0.999 - . logic_name=eponine scaffold_123 . biological_region 65694 65695 0.999 - . logic_name=eponine scaffold_123 . biological_region 68135 68141 0.999 + . logic_name=eponine scaffold_123 . biological_region 68153 68157 0.999 - . logic_name=eponine scaffold_123 . exon 58754 58847 . - . ID=Phyra84748.5;Parent=Phyra84748;constitutive=1;ensembl_phase=2;rank=5 scaffold_123 . exon 58927 59248 . - . ID=Phyra84748.4;Parent=Phyra84748;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_123 . exon 59614 59755 . - . ID=Phyra84748.3;Parent=Phyra84748;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_123 . exon 59793 59948 . - . ID=Phyra84748.2;Parent=Phyra84748;constitutive=1;rank=2 scaffold_123 . exon 59994 60119 . - . ID=Phyra84748.1;Parent=Phyra84748;constitutive=1;rank=1 scaffold_123 ensembl protein_coding_gene 60662 61036 . + . ID=Phyra84749;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000021;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 60662 61036 . + . ID=Phyra84749;Parent=Phyra84749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 60662 61036 . + 0 ID=Phyra84749;Parent=Phyra84749;rank=1 scaffold_123 . exon 60662 61036 . + . ID=Phyra84749.1;Parent=Phyra84749;constitutive=1;rank=1 scaffold_123 ensembl protein_coding_gene 61225 62931 . - . ID=Phyra84750;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000022;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 61225 62931 . - . ID=Phyra84750;Parent=Phyra84750;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 61225 62711 . - 0 ID=Phyra84750;Parent=Phyra84750;rank=2 scaffold_123 . exon 61225 62711 . - . ID=Phyra84750.2;Parent=Phyra84750;constitutive=1;ensembl_phase=1;rank=2 scaffold_123 . CDS 62781 62931 . - 0 ID=Phyra84750;Parent=Phyra84750;rank=1 scaffold_123 . exon 62781 62931 . - . ID=Phyra84750.1;Parent=Phyra84750;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_123 ensembl protein_coding_gene 63126 66353 . + . ID=Phyra84751;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000023;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 63126 66353 . + . ID=Phyra84751;Parent=Phyra84751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 63126 63811 . + 0 ID=Phyra84751;Parent=Phyra84751;rank=1 scaffold_123 . exon 63126 63811 . + . ID=Phyra84751.1;Parent=Phyra84751;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_123 . CDS 63950 64403 . + 0 ID=Phyra84751;Parent=Phyra84751;rank=2 scaffold_123 . exon 63950 64403 . + . ID=Phyra84751.2;Parent=Phyra84751;constitutive=1;ensembl_phase=2;rank=2 scaffold_123 . CDS 65323 65454 . + 0 ID=Phyra84751;Parent=Phyra84751;rank=3 scaffold_123 . exon 65323 65454 . + . ID=Phyra84751.3;Parent=Phyra84751;constitutive=1;rank=3 scaffold_123 . CDS 65532 65633 . + 0 ID=Phyra84751;Parent=Phyra84751;rank=4 scaffold_123 . exon 65532 65633 . + . ID=Phyra84751.4;Parent=Phyra84751;constitutive=1;rank=4 scaffold_123 . CDS 65685 66028 . + 0 ID=Phyra84751;Parent=Phyra84751;rank=5 scaffold_123 . exon 65685 66028 . + . ID=Phyra84751.5;Parent=Phyra84751;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_123 . CDS 66122 66353 . + 0 ID=Phyra84751;Parent=Phyra84751;rank=6 scaffold_123 . exon 66122 66353 . + . ID=Phyra84751.6;Parent=Phyra84751;constitutive=1;ensembl_phase=2;rank=6 scaffold_123 ensembl protein_coding_gene 66547 67904 . - . ID=Phyra84752;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000024;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 66547 67904 . - . ID=Phyra84752;Parent=Phyra84752;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 66547 66585 . - 0 ID=Phyra84752;Parent=Phyra84752;rank=8 scaffold_123 . exon 66547 66585 . - . ID=Phyra84752.8;Parent=Phyra84752;constitutive=1;rank=8 scaffold_123 . CDS 66653 66758 . - 0 ID=Phyra84752;Parent=Phyra84752;rank=7 scaffold_123 . exon 66653 66758 . - . ID=Phyra84752.7;Parent=Phyra84752;constitutive=1;ensembl_phase=2;rank=7 scaffold_123 . CDS 66836 67065 . - 0 ID=Phyra84752;Parent=Phyra84752;rank=6 scaffold_123 . exon 66836 67065 . - . ID=Phyra84752.6;Parent=Phyra84752;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_123 . CDS 67135 67243 . - 0 ID=Phyra84752;Parent=Phyra84752;rank=5 scaffold_123 . exon 67135 67243 . - . ID=Phyra84752.5;Parent=Phyra84752;constitutive=1;ensembl_phase=2;rank=5 scaffold_123 . CDS 67317 67483 . - 0 ID=Phyra84752;Parent=Phyra84752;rank=4 scaffold_123 . exon 67317 67483 . - . ID=Phyra84752.4;Parent=Phyra84752;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_123 . CDS 67561 67630 . - 0 ID=Phyra84752;Parent=Phyra84752;rank=3 scaffold_123 . exon 67561 67630 . - . ID=Phyra84752.3;Parent=Phyra84752;constitutive=1;ensembl_phase=2;rank=3 scaffold_123 . CDS 67690 67799 . - 0 ID=Phyra84752;Parent=Phyra84752;rank=2 scaffold_123 . exon 67690 67799 . - . ID=Phyra84752.2;Parent=Phyra84752;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_123 . CDS 67899 67904 . - 0 ID=Phyra84752;Parent=Phyra84752;rank=1 scaffold_123 . exon 67899 67904 . - . ID=Phyra84752.1;Parent=Phyra84752;constitutive=1;rank=1 scaffold_123 ensembl protein_coding_gene 68090 73458 . + . ID=Phyra84753;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000025;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 68090 73458 . + . ID=Phyra84753;Parent=Phyra84753;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 68090 69516 . + 0 ID=Phyra84753;Parent=Phyra84753;rank=1 scaffold_123 . exon 68090 69516 . + . ID=Phyra84753.1;Parent=Phyra84753;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_123 . CDS 70020 71562 . + 0 ID=Phyra84753;Parent=Phyra84753;rank=2 scaffold_123 . CDS 71898 73364 . + 0 ID=Phyra84753;Parent=Phyra84753;rank=3 scaffold_123 . CDS 73447 73458 . + 0 ID=Phyra84753;Parent=Phyra84753;rank=4 scaffold_123 . exon 70020 71562 . + . ID=Phyra84753.2;Parent=Phyra84753;constitutive=1;ensembl_phase=2;rank=2 scaffold_123 . exon 71898 73364 . + . ID=Phyra84753.3;Parent=Phyra84753;constitutive=1;rank=3 scaffold_123 . exon 73447 73458 . + . ID=Phyra84753.4;Parent=Phyra84753;constitutive=1;rank=4 scaffold_123 . repeat_region 81299 81348 . ? . description=dust scaffold_123 . biological_region 82592 82595 0.999 + . logic_name=eponine scaffold_123 . repeat_region 84433 84499 . - . description=Polinton-1_PI scaffold_123 . repeat_region 84646 84654 . ? . description=dust scaffold_123 . repeat_region 84688 85003 . + . description=Polinton-1_PI scaffold_123 . repeat_region 85458 85521 . ? . description=dust scaffold_123 . repeat_region 86242 86409 . ? . description=dust scaffold_123 . repeat_region 87789 87799 . ? . description=dust scaffold_123 . repeat_region 88024 92925 . - . description=Polinton-1_PI scaffold_123 ensembl protein_coding_gene 79569 83054 . + . ID=Phyra84754;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000026;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 79569 83054 . + . ID=Phyra84754;Parent=Phyra84754;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 79569 79747 . + 0 ID=Phyra84754;Parent=Phyra84754;rank=1 scaffold_123 . exon 79569 79747 . + . ID=Phyra84754.1;Parent=Phyra84754;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_123 . CDS 79784 80130 . + 0 ID=Phyra84754;Parent=Phyra84754;rank=2 scaffold_123 . exon 79784 80130 . + . ID=Phyra84754.2;Parent=Phyra84754;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_123 . CDS 80419 80515 . + 0 ID=Phyra84754;Parent=Phyra84754;rank=3 scaffold_123 . exon 80419 80515 . + . ID=Phyra84754.3;Parent=Phyra84754;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_123 . CDS 80753 81171 . + 0 ID=Phyra84754;Parent=Phyra84754;rank=4 scaffold_123 . exon 80753 81171 . + . ID=Phyra84754.4;Parent=Phyra84754;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_123 . CDS 81463 83054 . + 0 ID=Phyra84754;Parent=Phyra84754;rank=5 scaffold_123 . exon 81463 83054 . + . ID=Phyra84754.5;Parent=Phyra84754;constitutive=1;ensembl_phase=1;rank=5 scaffold_123 ensembl protein_coding_gene 83330 83680 . + . ID=Phyra84755;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000027;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 83330 83680 . + . ID=Phyra84755;Parent=Phyra84755;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 83330 83680 . + 0 ID=Phyra84755;Parent=Phyra84755;rank=1 scaffold_123 . exon 83330 83680 . + . ID=Phyra84755.1;Parent=Phyra84755;constitutive=1;rank=1 scaffold_123 ensembl protein_coding_gene 85560 87106 . - . ID=Phyra84756;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000028;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 85560 87106 . - . ID=Phyra84756;Parent=Phyra84756;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 85560 86201 . - 0 ID=Phyra84756;Parent=Phyra84756;rank=2 scaffold_123 . exon 85560 86201 . - . ID=Phyra84756.2;Parent=Phyra84756;constitutive=1;rank=2 scaffold_123 . CDS 86462 87106 . - 0 ID=Phyra84756;Parent=Phyra84756;rank=1 scaffold_123 . exon 86462 87106 . - . ID=Phyra84756.1;Parent=Phyra84756;constitutive=1;rank=1 scaffold_123 . repeat_region 93376 93477 . + . description=Gypsy-1-LTR_PI scaffold_123 . repeat_region 93506 94447 . + . description=Gypsy-2-I_PI-int scaffold_123 ensembl protein_coding_gene 93748 94350 . + . ID=Phyra84757;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_123000029;logic_name=jgi_phyra1 scaffold_123 ensembl transcript 93748 94350 . + . ID=Phyra84757;Parent=Phyra84757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_123 . CDS 93748 94350 . + 0 ID=Phyra84757;Parent=Phyra84757;rank=1 scaffold_123 . exon 93748 94350 . + . ID=Phyra84757.1;Parent=Phyra84757;constitutive=1;rank=1 scaffold_123 . repeat_region 94448 98775 . ? . description=dust scaffold_123 . biological_region 98883 98886 0.999 + . logic_name=eponine scaffold_123 . biological_region 98984 98990 0.999 - . logic_name=eponine scaffold_123 . repeat_region 100722 102459 . ? . description=dust scaffold_123 . repeat_region 102461 102944 . - . description=Polinton-1_PI scaffold_123 . repeat_region 103247 104353 . - . description=Polinton-1_PI scaffold_123 . repeat_region 105043 105140 . - . description=Polinton-1_PI scaffold_123 . repeat_region 105788 105832 . ? . description=trf scaffold_123 . repeat_region 106071 108707 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_122 1 119906 scaffold_122 . repeat_region 92 102 . ? . description=dust scaffold_122 . biological_region 175 177 0.999 + . logic_name=eponine scaffold_122 . repeat_region 1273 4690 . ? . description=dust scaffold_122 . repeat_region 6907 6914 . ? . description=dust scaffold_122 . repeat_region 7196 7207 . ? . description=dust scaffold_122 . repeat_region 7605 7665 . ? . description=dust scaffold_122 . repeat_region 7605 7666 . ? . description=trf scaffold_122 . repeat_region 8774 12998 . ? . description=dust scaffold_122 ensembl protein_coding_gene 7307 7858 . - . ID=Phyra84708;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_122000001;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 7307 7858 . - . ID=Phyra84708;Parent=Phyra84708;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 7307 7325 . - 0 ID=Phyra84708;Parent=Phyra84708;rank=2 scaffold_122 . exon 7307 7325 . - . ID=Phyra84708.2;Parent=Phyra84708;constitutive=1;ensembl_phase=2;rank=2 scaffold_122 . CDS 7455 7858 . - 0 ID=Phyra84708;Parent=Phyra84708;rank=1 scaffold_122 . exon 7455 7858 . - . ID=Phyra84708.1;Parent=Phyra84708;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 ensembl protein_coding_gene 13872 15014 . + . ID=Phyra72263;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_122000001;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 13872 15014 . + . ID=Phyra72263;Parent=Phyra72263;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 13872 15014 . + 0 ID=Phyra72263;Parent=Phyra72263;rank=1 scaffold_122 . exon 13872 15014 . + . ID=Phyra72263.1;Parent=Phyra72263;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 17421 20051 . + . ID=Phyra84710;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_122000003;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 17421 20051 . + . ID=Phyra84710;Parent=Phyra84710;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 17421 17503 . + 0 ID=Phyra84710;Parent=Phyra84710;rank=1 scaffold_122 . exon 17421 17503 . + . ID=Phyra84710.1;Parent=Phyra84710;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 . CDS 17565 17589 . + 0 ID=Phyra84710;Parent=Phyra84710;rank=2 scaffold_122 . exon 17565 17589 . + . ID=Phyra84710.2;Parent=Phyra84710;constitutive=1;ensembl_phase=2;rank=2 scaffold_122 . CDS 17672 18031 . + 0 ID=Phyra84710;Parent=Phyra84710;rank=3 scaffold_122 . exon 17672 18031 . + . ID=Phyra84710.3;Parent=Phyra84710;constitutive=1;rank=3 scaffold_122 . CDS 18114 20051 . + 0 ID=Phyra84710;Parent=Phyra84710;rank=4 scaffold_122 . exon 18114 20051 . + . ID=Phyra84710.4;Parent=Phyra84710;constitutive=1;rank=4 scaffold_122 . biological_region 20078 20082 0.999 - . logic_name=eponine scaffold_122 . repeat_region 20201 32967 . ? . description=dust scaffold_122 ensembl protein_coding_gene 33153 37346 . - . ID=Phyra84711;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_122000004;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 33153 37346 . - . ID=Phyra84711;Parent=Phyra84711;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 33153 34815 . - 0 ID=Phyra84711;Parent=Phyra84711;rank=6 scaffold_122 . exon 33153 34815 . - . ID=Phyra84711.6;Parent=Phyra84711;constitutive=1;ensembl_phase=2;rank=6 scaffold_122 . CDS 35196 35503 . - 0 ID=Phyra84711;Parent=Phyra84711;rank=5 scaffold_122 . exon 35196 35503 . - . ID=Phyra84711.5;Parent=Phyra84711;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_122 . CDS 35586 35610 . - 0 ID=Phyra84711;Parent=Phyra84711;rank=4 scaffold_122 . exon 35586 35610 . - . ID=Phyra84711.4;Parent=Phyra84711;constitutive=1;ensembl_phase=2;rank=4 scaffold_122 . CDS 35672 35770 . - 0 ID=Phyra84711;Parent=Phyra84711;rank=3 scaffold_122 . exon 35672 35770 . - . ID=Phyra84711.3;Parent=Phyra84711;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_122 . CDS 35991 36000 . - 0 ID=Phyra84711;Parent=Phyra84711;rank=2 scaffold_122 . exon 35991 36000 . - . ID=Phyra84711.2;Parent=Phyra84711;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_122 . CDS 36536 37346 . - 0 ID=Phyra84711;Parent=Phyra84711;rank=1 scaffold_122 . exon 36536 37346 . - . ID=Phyra84711.1;Parent=Phyra84711;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_122 . biological_region 40260 40261 0.999 - . logic_name=eponine scaffold_122 . repeat_region 41032 41052 . ? . description=trf scaffold_122 . repeat_region 41280 43221 . ? . description=dust scaffold_122 . biological_region 43729 43729 0.999 - . logic_name=eponine scaffold_122 . repeat_region 44262 47890 . ? . description=dust scaffold_122 . biological_region 49095 49097 0.999 + . logic_name=eponine scaffold_122 . repeat_region 49187 49296 . ? . description=dust scaffold_122 . biological_region 49767 49769 0.999 + . logic_name=eponine scaffold_122 ensembl protein_coding_gene 51159 51953 . - . ID=Phyra84712;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_122000005;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 51159 51953 . - . ID=Phyra84712;Parent=Phyra84712;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 51159 51953 . - 0 ID=Phyra84712;Parent=Phyra84712;rank=1 scaffold_122 . exon 51159 51953 . - . ID=Phyra84712.1;Parent=Phyra84712;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 52761 53619 . - . ID=Phyra84713;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_122000006;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 52761 53619 . - . ID=Phyra84713;Parent=Phyra84713;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 52761 53391 . - 0 ID=Phyra84713;Parent=Phyra84713;rank=2 scaffold_122 . exon 52761 53391 . - . ID=Phyra84713.2;Parent=Phyra84713;constitutive=1;ensembl_phase=2;rank=2 scaffold_122 . CDS 53459 53619 . - 0 ID=Phyra84713;Parent=Phyra84713;rank=1 scaffold_122 . exon 53459 53619 . - . ID=Phyra84713.1;Parent=Phyra84713;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 ensembl protein_coding_gene 54211 56228 . - . ID=Phyra84714;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_122000007;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 54211 56228 . - . ID=Phyra84714;Parent=Phyra84714;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 54211 54829 . - 0 ID=Phyra84714;Parent=Phyra84714;rank=4 scaffold_122 . exon 54211 54829 . - . ID=Phyra84714.4;Parent=Phyra84714;constitutive=1;ensembl_phase=2;rank=4 scaffold_122 . CDS 54889 55081 . - 0 ID=Phyra84714;Parent=Phyra84714;rank=3 scaffold_122 . exon 54889 55081 . - . ID=Phyra84714.3;Parent=Phyra84714;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_122 . CDS 55567 56021 . - 0 ID=Phyra84714;Parent=Phyra84714;rank=2 scaffold_122 . exon 55567 56021 . - . ID=Phyra84714.2;Parent=Phyra84714;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_122 . CDS 56065 56228 . - 0 ID=Phyra84714;Parent=Phyra84714;rank=1 scaffold_122 . exon 56065 56228 . - . ID=Phyra84714.1;Parent=Phyra84714;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 ensembl protein_coding_gene 56845 57713 . - . ID=Phyra84715;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_122000008;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 56845 57713 . - . ID=Phyra84715;Parent=Phyra84715;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 56845 57478 . - 0 ID=Phyra84715;Parent=Phyra84715;rank=2 scaffold_122 . exon 56845 57478 . - . ID=Phyra84715.2;Parent=Phyra84715;constitutive=1;ensembl_phase=2;rank=2 scaffold_122 . CDS 57553 57713 . - 0 ID=Phyra84715;Parent=Phyra84715;rank=1 scaffold_122 . exon 57553 57713 . - . ID=Phyra84715.1;Parent=Phyra84715;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 ensembl protein_coding_gene 59543 61954 . + . ID=Phyra96921;biotype=protein_coding;external_name=C_scaffold_122000004;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 59543 61954 . + . ID=Phyra96921;Parent=Phyra96921;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 59543 60356 . + 0 ID=Phyra96921;Parent=Phyra96921;rank=1 scaffold_122 . exon 59543 60356 . + . ID=Phyra96921.1;Parent=Phyra96921;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_122 . CDS 61143 61954 . + 0 ID=Phyra96921;Parent=Phyra96921;rank=2 scaffold_122 . repeat_region 60402 60474 . ? . description=dust scaffold_122 . repeat_region 60566 60575 . ? . description=dust scaffold_122 . repeat_region 64315 64322 . ? . description=dust scaffold_122 . repeat_region 66222 66231 . ? . description=dust scaffold_122 . biological_region 67408 67412 0.999 - . logic_name=eponine scaffold_122 . biological_region 68101 68104 0.999 - . logic_name=eponine scaffold_122 . repeat_region 69617 69641 . ? . description=dust scaffold_122 . repeat_region 69617 69645 . ? . description=trf scaffold_122 . exon 61143 61954 . + . ID=Phyra96921.2;Parent=Phyra96921;constitutive=1;ensembl_phase=1;rank=2 scaffold_122 . repeat_region 77667 78969 . + . description=GypsyPi-1c_I-int scaffold_122 ensembl protein_coding_gene 73869 74796 . - . ID=Phyra84718;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_122000011;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 73869 74796 . - . ID=Phyra84718;Parent=Phyra84718;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 73869 74155 . - 0 ID=Phyra84718;Parent=Phyra84718;rank=2 scaffold_122 . exon 73869 74155 . - . ID=Phyra84718.2;Parent=Phyra84718;constitutive=1;ensembl_phase=1;rank=2 scaffold_122 . CDS 74601 74796 . - 0 ID=Phyra84718;Parent=Phyra84718;rank=1 scaffold_122 . exon 74601 74796 . - . ID=Phyra84718.1;Parent=Phyra84718;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_122 ensembl protein_coding_gene 76574 79573 . + . ID=Phyra84719;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_122000012;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 76574 79573 . + . ID=Phyra84719;Parent=Phyra84719;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 76574 77444 . + 0 ID=Phyra84719;Parent=Phyra84719;rank=1 scaffold_122 . exon 76574 77444 . + . ID=Phyra84719.1;Parent=Phyra84719;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_122 . CDS 77652 78956 . + 0 ID=Phyra84719;Parent=Phyra84719;rank=2 scaffold_122 . exon 77652 78956 . + . ID=Phyra84719.2;Parent=Phyra84719;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_122 . CDS 79113 79573 . + 0 ID=Phyra84719;Parent=Phyra84719;rank=3 scaffold_122 . exon 79113 79573 . + . ID=Phyra84719.3;Parent=Phyra84719;constitutive=1;ensembl_phase=1;rank=3 scaffold_122 . repeat_region 81255 91370 . ? . description=dust scaffold_122 . repeat_region 91436 91468 . ? . description=trf scaffold_122 . repeat_region 91436 91469 . ? . description=trf scaffold_122 ensembl protein_coding_gene 98609 99361 . - . ID=Phyra84720;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_122000013;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 98609 99361 . - . ID=Phyra84720;Parent=Phyra84720;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 98609 99361 . - 0 ID=Phyra84720;Parent=Phyra84720;rank=1 scaffold_122 . exon 98609 99361 . - . ID=Phyra84720.1;Parent=Phyra84720;constitutive=1;rank=1 scaffold_122 . biological_region 103089 103093 0.999 + . logic_name=eponine scaffold_122 . repeat_region 104154 104162 . ? . description=dust scaffold_122 . repeat_region 107167 107175 . ? . description=dust scaffold_122 . repeat_region 109623 109630 . ? . description=dust scaffold_122 ensembl protein_coding_gene 104673 105560 . - . ID=Phyra72264;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_122000002;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 104673 105560 . - . ID=Phyra72264;Parent=Phyra72264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 104673 105560 . - 0 ID=Phyra72264;Parent=Phyra72264;rank=1 scaffold_122 . exon 104673 105560 . - . ID=Phyra72264.1;Parent=Phyra72264;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 100743 103268 . + . ID=Phyra84721;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_122000014;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 100743 103268 . + . ID=Phyra84721;Parent=Phyra84721;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 100743 101560 . + 0 ID=Phyra84721;Parent=Phyra84721;rank=1 scaffold_122 . exon 100743 101560 . + . ID=Phyra84721.1;Parent=Phyra84721;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 . CDS 101835 102183 . + 0 ID=Phyra84721;Parent=Phyra84721;rank=2 scaffold_122 . exon 101835 102183 . + . ID=Phyra84721.2;Parent=Phyra84721;constitutive=1;ensembl_phase=2;rank=2 scaffold_122 . CDS 102279 103268 . + 0 ID=Phyra84721;Parent=Phyra84721;rank=3 scaffold_122 . exon 102279 103268 . + . ID=Phyra84721.3;Parent=Phyra84721;constitutive=1;rank=3 scaffold_122 ensembl protein_coding_gene 109831 110511 . + . ID=Phyra84724;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_122000017;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 109831 110511 . + . ID=Phyra84724;Parent=Phyra84724;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 109831 110511 . + 0 ID=Phyra84724;Parent=Phyra84724;rank=1 scaffold_122 . exon 109831 110511 . + . ID=Phyra84724.1;Parent=Phyra84724;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 107064 109597 . - . ID=Phyra96926;biotype=protein_coding;external_name=C_scaffold_122000009;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 107064 109597 . - . ID=Phyra96926;Parent=Phyra96926;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 107064 107141 . - 0 ID=Phyra96926;Parent=Phyra96926;rank=12 scaffold_122 . exon 107064 107141 . - . ID=Phyra96926.12;Parent=Phyra96926;constitutive=1;rank=12 scaffold_122 . CDS 107207 107272 . - 0 ID=Phyra96926;Parent=Phyra96926;rank=11 scaffold_122 . exon 107207 107272 . - . ID=Phyra96926.11;Parent=Phyra96926;constitutive=1;rank=11 scaffold_122 . CDS 107335 107861 . - 0 ID=Phyra96926;Parent=Phyra96926;rank=10 scaffold_122 . exon 107335 107861 . - . ID=Phyra96926.10;Parent=Phyra96926;constitutive=1;ensembl_phase=1;rank=10 scaffold_122 . CDS 107940 108036 . - 0 ID=Phyra96926;Parent=Phyra96926;rank=9 scaffold_122 . exon 107940 108036 . - . ID=Phyra96926.9;Parent=Phyra96926;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_122 . CDS 108109 108204 . - 0 ID=Phyra96926;Parent=Phyra96926;rank=8 scaffold_122 . exon 108109 108204 . - . ID=Phyra96926.8;Parent=Phyra96926;constitutive=1;rank=8 scaffold_122 . CDS 108403 108442 . - 0 ID=Phyra96926;Parent=Phyra96926;rank=7 scaffold_122 . exon 108403 108442 . - . ID=Phyra96926.7;Parent=Phyra96926;constitutive=1;ensembl_phase=2;rank=7 scaffold_122 . CDS 108505 108578 . - 0 ID=Phyra96926;Parent=Phyra96926;rank=6 scaffold_122 . exon 108505 108578 . - . ID=Phyra96926.6;Parent=Phyra96926;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_122 . CDS 108648 108785 . - 0 ID=Phyra96926;Parent=Phyra96926;rank=5 scaffold_122 . exon 108648 108785 . - . ID=Phyra96926.5;Parent=Phyra96926;constitutive=1;rank=5 scaffold_122 . CDS 108859 108917 . - 0 ID=Phyra96926;Parent=Phyra96926;rank=4 scaffold_122 . exon 108859 108917 . - . ID=Phyra96926.4;Parent=Phyra96926;constitutive=1;ensembl_phase=1;rank=4 scaffold_122 . CDS 108981 109255 . - 0 ID=Phyra96926;Parent=Phyra96926;rank=3 scaffold_122 . exon 108981 109255 . - . ID=Phyra96926.3;Parent=Phyra96926;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_122 . CDS 109325 109456 . - 0 ID=Phyra96926;Parent=Phyra96926;rank=2 scaffold_122 . exon 109325 109456 . - . ID=Phyra96926.2;Parent=Phyra96926;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_122 . CDS 109518 109597 . - 0 ID=Phyra96926;Parent=Phyra96926;rank=1 scaffold_122 . exon 109518 109597 . - . ID=Phyra96926.1;Parent=Phyra96926;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 . repeat_region 111409 111547 . ? . description=trf scaffold_122 ensembl protein_coding_gene 114974 115723 . + . ID=Phyra72265;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_122000003;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 114974 115723 . + . ID=Phyra72265;Parent=Phyra72265;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 114974 115723 . + 0 ID=Phyra72265;Parent=Phyra72265;rank=1 scaffold_122 . exon 114974 115723 . + . ID=Phyra72265.1;Parent=Phyra72265;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 111621 112862 . + . ID=Phyra84725;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_122000018;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 111621 112862 . + . ID=Phyra84725;Parent=Phyra84725;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 111621 112862 . + 0 ID=Phyra84725;Parent=Phyra84725;rank=1 scaffold_122 . exon 111621 112862 . + . ID=Phyra84725.1;Parent=Phyra84725;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 113031 113825 . - . ID=Phyra84726;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_122000019;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 113031 113825 . - . ID=Phyra84726;Parent=Phyra84726;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 113031 113825 . - 0 ID=Phyra84726;Parent=Phyra84726;rank=1 scaffold_122 . exon 113031 113825 . - . ID=Phyra84726.1;Parent=Phyra84726;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 118094 118789 . - . ID=Phyra84728;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_122000021;logic_name=jgi_phyra1 scaffold_122 ensembl transcript 118094 118789 . - . ID=Phyra84728;Parent=Phyra84728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_122 . CDS 118094 118789 . - 0 ID=Phyra84728;Parent=Phyra84728;rank=1 scaffold_122 . exon 118094 118789 . - . ID=Phyra84728.1;Parent=Phyra84728;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_121 1 121071 scaffold_121 . biological_region 3787 3790 0.999 + . logic_name=eponine scaffold_121 . repeat_region 4084 4105 . ? . description=dust scaffold_121 . repeat_region 4084 4110 . ? . description=trf scaffold_121 . biological_region 4740 4745 0.999 + . logic_name=eponine scaffold_121 . biological_region 4815 4815 0.999 + . logic_name=eponine scaffold_121 . biological_region 5036 5037 0.999 - . logic_name=eponine scaffold_121 . biological_region 7568 7573 0.999 + . logic_name=eponine scaffold_121 . biological_region 7859 7862 0.999 + . logic_name=eponine scaffold_121 . biological_region 7868 7871 0.999 - . logic_name=eponine scaffold_121 ensembl protein_coding_gene 589 2055 . + . ID=Phyra72259;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_121000001;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 589 2055 . + . ID=Phyra72259;Parent=Phyra72259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 589 2055 . + 0 ID=Phyra72259;Parent=Phyra72259;rank=1 scaffold_121 . exon 589 2055 . + . ID=Phyra72259.1;Parent=Phyra72259;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 3750 4082 . - . ID=Phyra72260;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_121000002;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 3750 4082 . - . ID=Phyra72260;Parent=Phyra72260;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 3750 4082 . - 0 ID=Phyra72260;Parent=Phyra72260;rank=1 scaffold_121 . exon 3750 4082 . - . ID=Phyra72260.1;Parent=Phyra72260;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 5960 7204 . - . ID=Phyra72261;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_121000003;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 5960 7204 . - . ID=Phyra72261;Parent=Phyra72261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 5960 7204 . - 0 ID=Phyra72261;Parent=Phyra72261;rank=1 scaffold_121 . exon 5960 7204 . - . ID=Phyra72261.1;Parent=Phyra72261;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 8090 9601 . + . ID=Phyra72262;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_121000004;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 8090 9601 . + . ID=Phyra72262;Parent=Phyra72262;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 8090 9601 . + 0 ID=Phyra72262;Parent=Phyra72262;rank=1 scaffold_121 . exon 8090 9601 . + . ID=Phyra72262.1;Parent=Phyra72262;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 2463 3561 . + . ID=Phyra84675;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000002;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 2463 3561 . + . ID=Phyra84675;Parent=Phyra84675;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 2463 3008 . + 0 ID=Phyra84675;Parent=Phyra84675;rank=1 scaffold_121 . exon 2463 3008 . + . ID=Phyra84675.1;Parent=Phyra84675;constitutive=1;rank=1 scaffold_121 . CDS 3133 3561 . + 0 ID=Phyra84675;Parent=Phyra84675;rank=2 scaffold_121 . exon 3133 3561 . + . ID=Phyra84675.2;Parent=Phyra84675;constitutive=1;rank=2 scaffold_121 ensembl protein_coding_gene 4662 5357 . + . ID=Phyra84677;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000004;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 4662 5357 . + . ID=Phyra84677;Parent=Phyra84677;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 4662 5357 . + 0 ID=Phyra84677;Parent=Phyra84677;rank=1 scaffold_121 . exon 4662 5357 . + . ID=Phyra84677.1;Parent=Phyra84677;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 10512 16479 . + . ID=Phyra84680;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000007;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 10512 16479 . + . ID=Phyra84680;Parent=Phyra84680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 10512 10876 . + 0 ID=Phyra84680;Parent=Phyra84680;rank=1 scaffold_121 . exon 10512 10876 . + . ID=Phyra84680.1;Parent=Phyra84680;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_121 . CDS 11227 11278 . + 0 ID=Phyra84680;Parent=Phyra84680;rank=2 scaffold_121 . exon 11227 11278 . + . ID=Phyra84680.2;Parent=Phyra84680;constitutive=1;ensembl_phase=2;rank=2 scaffold_121 . CDS 11758 16479 . + 0 ID=Phyra84680;Parent=Phyra84680;rank=3 scaffold_121 . exon 11758 16479 . + . ID=Phyra84680.3;Parent=Phyra84680;constitutive=1;rank=3 scaffold_121 ensembl protein_coding_gene 16755 17428 . - . ID=Phyra84681;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000008;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 16755 17428 . - . ID=Phyra84681;Parent=Phyra84681;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 16755 17294 . - 0 ID=Phyra84681;Parent=Phyra84681;rank=2 scaffold_121 . exon 16755 17294 . - . ID=Phyra84681.2;Parent=Phyra84681;constitutive=1;rank=2 scaffold_121 . CDS 17360 17428 . - 0 ID=Phyra84681;Parent=Phyra84681;rank=1 scaffold_121 . exon 17360 17428 . - . ID=Phyra84681.1;Parent=Phyra84681;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 17638 20393 . + . ID=Phyra96912;biotype=protein_coding;external_name=C_scaffold_121000003;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 17638 20393 . + . ID=Phyra96912;Parent=Phyra96912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 17638 17931 . + 0 ID=Phyra96912;Parent=Phyra96912;rank=1 scaffold_121 . exon 17638 17931 . + . ID=Phyra96912.1;Parent=Phyra96912;constitutive=1;rank=1 scaffold_121 . CDS 17953 18687 . + 0 ID=Phyra96912;Parent=Phyra96912;rank=2 scaffold_121 . exon 17953 18687 . + . ID=Phyra96912.2;Parent=Phyra96912;constitutive=1;rank=2 scaffold_121 . CDS 18979 19182 . + 0 ID=Phyra96912;Parent=Phyra96912;rank=3 scaffold_121 . CDS 19258 19369 . + 0 ID=Phyra96912;Parent=Phyra96912;rank=4 scaffold_121 . CDS 19406 19519 . + 0 ID=Phyra96912;Parent=Phyra96912;rank=5 scaffold_121 . CDS 19577 20075 . + 0 ID=Phyra96912;Parent=Phyra96912;rank=6 scaffold_121 . CDS 20193 20313 . + 0 ID=Phyra96912;Parent=Phyra96912;rank=7 scaffold_121 . CDS 20385 20393 . + 0 ID=Phyra96912;Parent=Phyra96912;rank=8 scaffold_121 ensembl protein_coding_gene 21923 23383 . + . ID=Phyra84683;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000010;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 21923 23383 . + . ID=Phyra84683;Parent=Phyra84683;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 21923 23383 . + 0 ID=Phyra84683;Parent=Phyra84683;rank=1 scaffold_121 . exon 21923 23383 . + . ID=Phyra84683.1;Parent=Phyra84683;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 25131 26591 . + . ID=Phyra84684;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000011;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 25131 26591 . + . ID=Phyra84684;Parent=Phyra84684;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 25131 26591 . + 0 ID=Phyra84684;Parent=Phyra84684;rank=1 scaffold_121 . exon 25131 26591 . + . ID=Phyra84684.1;Parent=Phyra84684;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 26786 27877 . - . ID=Phyra84685;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000012;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 26786 27877 . - . ID=Phyra84685;Parent=Phyra84685;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 26786 27877 . - 0 ID=Phyra84685;Parent=Phyra84685;rank=1 scaffold_121 . exon 26786 27877 . - . ID=Phyra84685.1;Parent=Phyra84685;constitutive=1;rank=1 scaffold_121 . exon 18979 19182 . + . ID=Phyra96912.3;Parent=Phyra96912;constitutive=1;rank=3 scaffold_121 . exon 19258 19369 . + . ID=Phyra96912.4;Parent=Phyra96912;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_121 . exon 19406 19519 . + . ID=Phyra96912.5;Parent=Phyra96912;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_121 . exon 19577 20075 . + . ID=Phyra96912.6;Parent=Phyra96912;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_121 . exon 20193 20313 . + . ID=Phyra96912.7;Parent=Phyra96912;constitutive=1;ensembl_phase=2;rank=7 scaffold_121 . exon 20385 20393 . + . ID=Phyra96912.8;Parent=Phyra96912;constitutive=1;rank=8 scaffold_121 . biological_region 36311 36316 0.999 + . logic_name=eponine scaffold_121 . biological_region 36559 36560 0.999 + . logic_name=eponine scaffold_121 ensembl protein_coding_gene 28256 41668 . + . ID=Phyra84686;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000013;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 28256 41668 . + . ID=Phyra84686;Parent=Phyra84686;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 28256 28381 . + 0 ID=Phyra84686;Parent=Phyra84686;rank=1 scaffold_121 . exon 28256 28381 . + . ID=Phyra84686.1;Parent=Phyra84686;constitutive=1;rank=1 scaffold_121 . CDS 28466 29869 . + 0 ID=Phyra84686;Parent=Phyra84686;rank=2 scaffold_121 . exon 28466 29869 . + . ID=Phyra84686.2;Parent=Phyra84686;constitutive=1;rank=2 scaffold_121 . CDS 29997 33953 . + 0 ID=Phyra84686;Parent=Phyra84686;rank=3 scaffold_121 . exon 29997 33953 . + . ID=Phyra84686.3;Parent=Phyra84686;constitutive=1;rank=3 scaffold_121 . CDS 34372 34437 . + 0 ID=Phyra84686;Parent=Phyra84686;rank=4 scaffold_121 . exon 34372 34437 . + . ID=Phyra84686.4;Parent=Phyra84686;constitutive=1;rank=4 scaffold_121 . CDS 34509 34583 . + 0 ID=Phyra84686;Parent=Phyra84686;rank=5 scaffold_121 . exon 34509 34583 . + . ID=Phyra84686.5;Parent=Phyra84686;constitutive=1;rank=5 scaffold_121 . CDS 34656 36047 . + 0 ID=Phyra84686;Parent=Phyra84686;rank=6 scaffold_121 . exon 34656 36047 . + . ID=Phyra84686.6;Parent=Phyra84686;constitutive=1;rank=6 scaffold_121 . CDS 36106 41317 . + 0 ID=Phyra84686;Parent=Phyra84686;rank=7 scaffold_121 . exon 36106 41317 . + . ID=Phyra84686.7;Parent=Phyra84686;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_121 . CDS 41352 41368 . + 0 ID=Phyra84686;Parent=Phyra84686;rank=8 scaffold_121 . CDS 41630 41668 . + 0 ID=Phyra84686;Parent=Phyra84686;rank=9 scaffold_121 . repeat_region 42710 42838 . ? . description=trf scaffold_121 . repeat_region 42742 42931 . ? . description=trf scaffold_121 ensembl protein_coding_gene 45922 47244 . + . ID=Phyra40606;biotype=protein_coding;external_name=gwEuk.121.33.1;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 45922 47244 . + . ID=Phyra40606;Parent=Phyra40606;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 45922 47244 . + 0 ID=Phyra40606;Parent=Phyra40606;rank=1 scaffold_121 . exon 45922 47244 . + . ID=Phyra40606.1;Parent=Phyra40606;constitutive=1;rank=1 scaffold_121 . exon 41352 41368 . + . ID=Phyra84686.8;Parent=Phyra84686;constitutive=1;ensembl_phase=1;rank=8 scaffold_121 . exon 41630 41668 . + . ID=Phyra84686.9;Parent=Phyra84686;constitutive=1;rank=9 scaffold_121 ensembl protein_coding_gene 42675 43727 . + . ID=Phyra84687;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000014;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 42675 43727 . + . ID=Phyra84687;Parent=Phyra84687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 42675 43727 . + 0 ID=Phyra84687;Parent=Phyra84687;rank=1 scaffold_121 . exon 42675 43727 . + . ID=Phyra84687.1;Parent=Phyra84687;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 44310 45254 . - . ID=Phyra84688;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000015;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 44310 45254 . - . ID=Phyra84688;Parent=Phyra84688;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 44310 44559 . - 0 ID=Phyra84688;Parent=Phyra84688;rank=6 scaffold_121 . exon 44310 44559 . - . ID=Phyra84688.6;Parent=Phyra84688;constitutive=1;ensembl_phase=2;rank=6 scaffold_121 . CDS 44583 44646 . - 0 ID=Phyra84688;Parent=Phyra84688;rank=5 scaffold_121 . exon 44583 44646 . - . ID=Phyra84688.5;Parent=Phyra84688;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_121 . CDS 44734 44835 . - 0 ID=Phyra84688;Parent=Phyra84688;rank=4 scaffold_121 . exon 44734 44835 . - . ID=Phyra84688.4;Parent=Phyra84688;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_121 . CDS 44896 44962 . - 0 ID=Phyra84688;Parent=Phyra84688;rank=3 scaffold_121 . exon 44896 44962 . - . ID=Phyra84688.3;Parent=Phyra84688;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_121 . CDS 45072 45139 . - 0 ID=Phyra84688;Parent=Phyra84688;rank=2 scaffold_121 . exon 45072 45139 . - . ID=Phyra84688.2;Parent=Phyra84688;constitutive=1;ensembl_phase=1;rank=2 scaffold_121 . CDS 45221 45254 . - 0 ID=Phyra84688;Parent=Phyra84688;rank=1 scaffold_121 . exon 45221 45254 . - . ID=Phyra84688.1;Parent=Phyra84688;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_121 . biological_region 47333 47335 0.999 + . logic_name=eponine scaffold_121 . biological_region 47389 47390 0.999 + . logic_name=eponine scaffold_121 . repeat_region 50602 50609 . ? . description=dust scaffold_121 . repeat_region 54861 54878 . ? . description=dust scaffold_121 . repeat_region 54992 55041 . ? . description=dust scaffold_121 . biological_region 55076 55082 0.999 + . logic_name=eponine scaffold_121 ensembl protein_coding_gene 50654 55162 . - . ID=Phyra84690;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000017;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 50654 55162 . - . ID=Phyra84690;Parent=Phyra84690;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 50654 50683 . - 0 ID=Phyra84690;Parent=Phyra84690;rank=6 scaffold_121 . exon 50654 50683 . - . ID=Phyra84690.6;Parent=Phyra84690;constitutive=1;rank=6 scaffold_121 . CDS 50703 52076 . - 0 ID=Phyra84690;Parent=Phyra84690;rank=5 scaffold_121 . exon 50703 52076 . - . ID=Phyra84690.5;Parent=Phyra84690;constitutive=1;rank=5 scaffold_121 . CDS 52212 52318 . - 0 ID=Phyra84690;Parent=Phyra84690;rank=4 scaffold_121 . exon 52212 52318 . - . ID=Phyra84690.4;Parent=Phyra84690;constitutive=1;ensembl_phase=1;rank=4 scaffold_121 . CDS 52361 54809 . - 0 ID=Phyra84690;Parent=Phyra84690;rank=3 scaffold_121 . exon 52361 54809 . - . ID=Phyra84690.3;Parent=Phyra84690;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_121 . CDS 54888 54989 . - 0 ID=Phyra84690;Parent=Phyra84690;rank=2 scaffold_121 . exon 54888 54989 . - . ID=Phyra84690.2;Parent=Phyra84690;constitutive=1;rank=2 scaffold_121 . CDS 55151 55162 . - 0 ID=Phyra84690;Parent=Phyra84690;rank=1 scaffold_121 . exon 55151 55162 . - . ID=Phyra84690.1;Parent=Phyra84690;constitutive=1;rank=1 scaffold_121 . repeat_region 58088 58178 . ? . description=trf scaffold_121 . repeat_region 58112 58200 . ? . description=trf scaffold_121 . repeat_region 58121 58207 . ? . description=trf scaffold_121 . repeat_region 58261 58284 . ? . description=trf scaffold_121 . repeat_region 62840 62881 . ? . description=trf scaffold_121 ensembl protein_coding_gene 57143 58249 . - . ID=Phyra84691;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000018;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 57143 58249 . - . ID=Phyra84691;Parent=Phyra84691;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 57143 58249 . - 0 ID=Phyra84691;Parent=Phyra84691;rank=1 scaffold_121 . exon 57143 58249 . - . ID=Phyra84691.1;Parent=Phyra84691;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 59736 60244 . - . ID=Phyra84692;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000019;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 59736 60244 . - . ID=Phyra84692;Parent=Phyra84692;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 59736 59776 . - 0 ID=Phyra84692;Parent=Phyra84692;rank=3 scaffold_121 . exon 59736 59776 . - . ID=Phyra84692.3;Parent=Phyra84692;constitutive=1;ensembl_phase=1;rank=3 scaffold_121 . CDS 59864 59953 . - 0 ID=Phyra84692;Parent=Phyra84692;rank=2 scaffold_121 . exon 59864 59953 . - . ID=Phyra84692.2;Parent=Phyra84692;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_121 . CDS 60031 60244 . - 0 ID=Phyra84692;Parent=Phyra84692;rank=1 scaffold_121 . exon 60031 60244 . - . ID=Phyra84692.1;Parent=Phyra84692;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_121 ensembl protein_coding_gene 61385 64018 . + . ID=Phyra84693;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000020;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 61385 64018 . + . ID=Phyra84693;Parent=Phyra84693;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 61385 64018 . + 0 ID=Phyra84693;Parent=Phyra84693;rank=1 scaffold_121 . exon 61385 64018 . + . ID=Phyra84693.1;Parent=Phyra84693;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 64155 64934 . + . ID=Phyra84694;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000021;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 64155 64934 . + . ID=Phyra84694;Parent=Phyra84694;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 64155 64934 . + 0 ID=Phyra84694;Parent=Phyra84694;rank=1 scaffold_121 . exon 64155 64934 . + . ID=Phyra84694.1;Parent=Phyra84694;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 65192 67236 . - . ID=Phyra84695;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000022;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 65192 67236 . - . ID=Phyra84695;Parent=Phyra84695;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 65192 66069 . - 0 ID=Phyra84695;Parent=Phyra84695;rank=7 scaffold_121 . exon 65192 66069 . - . ID=Phyra84695.7;Parent=Phyra84695;constitutive=1;ensembl_phase=1;rank=7 scaffold_121 . CDS 66137 66200 . - 0 ID=Phyra84695;Parent=Phyra84695;rank=6 scaffold_121 . CDS 66270 66357 . - 0 ID=Phyra84695;Parent=Phyra84695;rank=5 scaffold_121 . CDS 66419 66524 . - 0 ID=Phyra84695;Parent=Phyra84695;rank=4 scaffold_121 . CDS 66584 66746 . - 0 ID=Phyra84695;Parent=Phyra84695;rank=3 scaffold_121 . CDS 66846 66993 . - 0 ID=Phyra84695;Parent=Phyra84695;rank=2 scaffold_121 . CDS 67073 67236 . - 0 ID=Phyra84695;Parent=Phyra84695;rank=1 scaffold_121 . biological_region 67759 67766 0.999 + . logic_name=eponine scaffold_121 . biological_region 67772 67777 0.999 - . logic_name=eponine scaffold_121 . biological_region 67819 67823 0.999 - . logic_name=eponine scaffold_121 . biological_region 67826 67834 0.999 + . logic_name=eponine scaffold_121 . biological_region 67875 67878 0.999 - . logic_name=eponine scaffold_121 . biological_region 67886 67892 0.999 - . logic_name=eponine scaffold_121 . biological_region 67897 67906 0.999 + . logic_name=eponine scaffold_121 . biological_region 67905 67912 0.999 - . logic_name=eponine scaffold_121 . biological_region 67928 67933 0.999 + . logic_name=eponine scaffold_121 . biological_region 68008 68014 0.999 - . logic_name=eponine scaffold_121 . biological_region 68034 68047 0.999 - . logic_name=eponine scaffold_121 . biological_region 68062 68064 0.999 - . logic_name=eponine scaffold_121 . biological_region 68062 68069 0.999 + . logic_name=eponine scaffold_121 . biological_region 68092 68094 0.999 - . logic_name=eponine scaffold_121 . biological_region 73542 73546 0.999 + . logic_name=eponine scaffold_121 . exon 66137 66200 . - . ID=Phyra84695.6;Parent=Phyra84695;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_121 . exon 66270 66357 . - . ID=Phyra84695.5;Parent=Phyra84695;constitutive=1;ensembl_phase=2;rank=5 scaffold_121 . exon 66419 66524 . - . ID=Phyra84695.4;Parent=Phyra84695;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_121 . exon 66584 66746 . - . ID=Phyra84695.3;Parent=Phyra84695;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_121 . exon 66846 66993 . - . ID=Phyra84695.2;Parent=Phyra84695;constitutive=1;ensembl_phase=2;rank=2 scaffold_121 . exon 67073 67236 . - . ID=Phyra84695.1;Parent=Phyra84695;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_121 ensembl protein_coding_gene 67677 70094 . + . ID=Phyra84696;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000023;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 67677 70094 . + . ID=Phyra84696;Parent=Phyra84696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 67677 69047 . + 0 ID=Phyra84696;Parent=Phyra84696;rank=1 scaffold_121 . exon 67677 69047 . + . ID=Phyra84696.1;Parent=Phyra84696;constitutive=1;rank=1 scaffold_121 . CDS 69130 69335 . + 0 ID=Phyra84696;Parent=Phyra84696;rank=2 scaffold_121 . exon 69130 69335 . + . ID=Phyra84696.2;Parent=Phyra84696;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_121 . CDS 69414 69674 . + 0 ID=Phyra84696;Parent=Phyra84696;rank=3 scaffold_121 . exon 69414 69674 . + . ID=Phyra84696.3;Parent=Phyra84696;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_121 . CDS 69731 69904 . + 0 ID=Phyra84696;Parent=Phyra84696;rank=4 scaffold_121 . exon 69731 69904 . + . ID=Phyra84696.4;Parent=Phyra84696;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_121 . CDS 69971 70094 . + 0 ID=Phyra84696;Parent=Phyra84696;rank=5 scaffold_121 . exon 69971 70094 . + . ID=Phyra84696.5;Parent=Phyra84696;constitutive=1;ensembl_phase=2;rank=5 scaffold_121 ensembl protein_coding_gene 70232 75036 . - . ID=Phyra84697;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000024;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 70232 75036 . - . ID=Phyra84697;Parent=Phyra84697;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 70232 70432 . - 0 ID=Phyra84697;Parent=Phyra84697;rank=6 scaffold_121 . exon 70232 70432 . - . ID=Phyra84697.6;Parent=Phyra84697;constitutive=1;rank=6 scaffold_121 . CDS 70489 70689 . - 0 ID=Phyra84697;Parent=Phyra84697;rank=5 scaffold_121 . exon 70489 70689 . - . ID=Phyra84697.5;Parent=Phyra84697;constitutive=1;rank=5 scaffold_121 . CDS 70763 71239 . - 0 ID=Phyra84697;Parent=Phyra84697;rank=4 scaffold_121 . exon 70763 71239 . - . ID=Phyra84697.4;Parent=Phyra84697;constitutive=1;rank=4 scaffold_121 . CDS 71311 73031 . - 0 ID=Phyra84697;Parent=Phyra84697;rank=3 scaffold_121 . exon 71311 73031 . - . ID=Phyra84697.3;Parent=Phyra84697;constitutive=1;ensembl_phase=1;rank=3 scaffold_121 . CDS 73491 73902 . - 0 ID=Phyra84697;Parent=Phyra84697;rank=2 scaffold_121 . exon 73491 73902 . - . ID=Phyra84697.2;Parent=Phyra84697;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_121 . CDS 73942 75036 . - 0 ID=Phyra84697;Parent=Phyra84697;rank=1 scaffold_121 . exon 73942 75036 . - . ID=Phyra84697.1;Parent=Phyra84697;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 75415 76173 . + . ID=Phyra96914;biotype=protein_coding;external_name=C_scaffold_121000005;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 75415 76173 . + . ID=Phyra96914;Parent=Phyra96914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 75415 75537 . + 0 ID=Phyra96914;Parent=Phyra96914;rank=1 scaffold_121 . exon 75415 75537 . + . ID=Phyra96914.1;Parent=Phyra96914;constitutive=1;rank=1 scaffold_121 . CDS 75596 75705 . + 0 ID=Phyra96914;Parent=Phyra96914;rank=2 scaffold_121 . exon 75596 75705 . + . ID=Phyra96914.2;Parent=Phyra96914;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_121 . CDS 75763 75854 . + 0 ID=Phyra96914;Parent=Phyra96914;rank=3 scaffold_121 . exon 75763 75854 . + . ID=Phyra96914.3;Parent=Phyra96914;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_121 . CDS 75914 76173 . + 0 ID=Phyra96914;Parent=Phyra96914;rank=4 scaffold_121 . exon 75914 76173 . + . ID=Phyra96914.4;Parent=Phyra96914;constitutive=1;ensembl_phase=1;rank=4 scaffold_121 ensembl protein_coding_gene 76356 78123 . + . ID=Phyra96916;biotype=protein_coding;external_name=C_scaffold_121000007;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 76356 78123 . + . ID=Phyra96916;Parent=Phyra96916;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 76356 76554 . + 0 ID=Phyra96916;Parent=Phyra96916;rank=1 scaffold_121 . exon 76356 76554 . + . ID=Phyra96916.1;Parent=Phyra96916;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_121 . CDS 76669 78123 . + 0 ID=Phyra96916;Parent=Phyra96916;rank=2 scaffold_121 . exon 76669 78123 . + . ID=Phyra96916.2;Parent=Phyra96916;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_121 ensembl protein_coding_gene 81174 86327 . + . ID=Phyra96917;biotype=protein_coding;external_name=C_scaffold_121000008;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 81174 86327 . + . ID=Phyra96917;Parent=Phyra96917;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 81174 81595 . + 0 ID=Phyra96917;Parent=Phyra96917;rank=1 scaffold_121 . exon 81174 81595 . + . ID=Phyra96917.1;Parent=Phyra96917;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_121 . CDS 81653 81695 . + 0 ID=Phyra96917;Parent=Phyra96917;rank=2 scaffold_121 . exon 81653 81695 . + . ID=Phyra96917.2;Parent=Phyra96917;constitutive=1;ensembl_phase=2;rank=2 scaffold_121 . CDS 81758 81922 . + 0 ID=Phyra96917;Parent=Phyra96917;rank=3 scaffold_121 . exon 81758 81922 . + . ID=Phyra96917.3;Parent=Phyra96917;constitutive=1;rank=3 scaffold_121 . CDS 81994 82134 . + 0 ID=Phyra96917;Parent=Phyra96917;rank=4 scaffold_121 . exon 81994 82134 . + . ID=Phyra96917.4;Parent=Phyra96917;constitutive=1;rank=4 scaffold_121 . CDS 82208 82288 . + 0 ID=Phyra96917;Parent=Phyra96917;rank=5 scaffold_121 . exon 82208 82288 . + . ID=Phyra96917.5;Parent=Phyra96917;constitutive=1;rank=5 scaffold_121 . CDS 82355 82466 . + 0 ID=Phyra96917;Parent=Phyra96917;rank=6 scaffold_121 . exon 82355 82466 . + . ID=Phyra96917.6;Parent=Phyra96917;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_121 . CDS 82548 82660 . + 0 ID=Phyra96917;Parent=Phyra96917;rank=7 scaffold_121 . exon 82548 82660 . + . ID=Phyra96917.7;Parent=Phyra96917;constitutive=1;ensembl_phase=1;rank=7 scaffold_121 . CDS 82737 82801 . + 0 ID=Phyra96917;Parent=Phyra96917;rank=8 scaffold_121 . exon 82737 82801 . + . ID=Phyra96917.8;Parent=Phyra96917;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_121 . CDS 83326 83734 . + 0 ID=Phyra96917;Parent=Phyra96917;rank=9 scaffold_121 . exon 83326 83734 . + . ID=Phyra96917.9;Parent=Phyra96917;constitutive=1;ensembl_phase=2;rank=9 scaffold_121 . CDS 83788 83925 . + 0 ID=Phyra96917;Parent=Phyra96917;rank=10 scaffold_121 . exon 83788 83925 . + . ID=Phyra96917.10;Parent=Phyra96917;constitutive=1;rank=10 scaffold_121 . CDS 84066 84272 . + 0 ID=Phyra96917;Parent=Phyra96917;rank=11 scaffold_121 . CDS 84300 84439 . + 0 ID=Phyra96917;Parent=Phyra96917;rank=12 scaffold_121 . CDS 84515 86327 . + 0 ID=Phyra96917;Parent=Phyra96917;rank=13 scaffold_121 . biological_region 85386 85388 0.999 - . logic_name=eponine scaffold_121 . biological_region 85782 85787 0.999 + . logic_name=eponine scaffold_121 . biological_region 87299 87300 0.999 + . logic_name=eponine scaffold_121 . repeat_region 87568 87644 . ? . description=trf scaffold_121 . repeat_region 87629 87707 . ? . description=trf scaffold_121 . repeat_region 88011 88085 . ? . description=trf scaffold_121 . repeat_region 91846 91854 . ? . description=dust scaffold_121 . repeat_region 92312 92333 . ? . description=trf scaffold_121 ensembl pseudogene 92525 93800 . + . ID=Phyra40627;biotype=pseudogene;external_name=gwEuk.121.54.1;logic_name=jgi_phyra1 scaffold_121 ensembl pseudogene 92525 93800 . + . ID=Phyra40627;Parent=Phyra40627;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_121 . exon 92525 93800 . + . ID=Phyra40627.1;Parent=Phyra40627;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_121 ensembl protein_coding_gene 87292 88341 . + . ID=Phyra84702;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000029;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 87292 88341 . + . ID=Phyra84702;Parent=Phyra84702;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 87292 88341 . + 0 ID=Phyra84702;Parent=Phyra84702;rank=1 scaffold_121 . exon 87292 88341 . + . ID=Phyra84702.1;Parent=Phyra84702;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 91175 91772 . - . ID=Phyra84703;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000030;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 91175 91772 . - . ID=Phyra84703;Parent=Phyra84703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 91175 91265 . - 0 ID=Phyra84703;Parent=Phyra84703;rank=2 scaffold_121 . exon 91175 91265 . - . ID=Phyra84703.2;Parent=Phyra84703;constitutive=1;ensembl_phase=2;rank=2 scaffold_121 . CDS 91333 91772 . - 0 ID=Phyra84703;Parent=Phyra84703;rank=1 scaffold_121 . exon 91333 91772 . - . ID=Phyra84703.1;Parent=Phyra84703;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_121 . exon 84066 84272 . + . ID=Phyra96917.11;Parent=Phyra96917;constitutive=1;rank=11 scaffold_121 . exon 84300 84439 . + . ID=Phyra96917.12;Parent=Phyra96917;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_121 . exon 84515 86327 . + . ID=Phyra96917.13;Parent=Phyra96917;constitutive=1;ensembl_phase=2;rank=13 scaffold_121 ensembl protein_coding_gene 98403 99210 . + . ID=Phyra84705;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000032;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 98403 99210 . + . ID=Phyra84705;Parent=Phyra84705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 98403 99091 . + 0 ID=Phyra84705;Parent=Phyra84705;rank=1 scaffold_121 . exon 98403 99091 . + . ID=Phyra84705.1;Parent=Phyra84705;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_121 . CDS 99195 99210 . + 0 ID=Phyra84705;Parent=Phyra84705;rank=2 scaffold_121 . exon 99195 99210 . + . ID=Phyra84705.2;Parent=Phyra84705;constitutive=1;ensembl_phase=2;rank=2 scaffold_121 . repeat_region 99622 115350 . ? . description=dust scaffold_121 . repeat_region 116319 116361 . ? . description=trf scaffold_121 . repeat_region 116460 116506 . ? . description=trf scaffold_121 . biological_region 117450 117453 0.999 + . logic_name=eponine scaffold_121 . biological_region 117486 117490 0.999 - . logic_name=eponine scaffold_121 . biological_region 117540 117545 0.999 + . logic_name=eponine scaffold_121 . biological_region 117543 117543 0.999 - . logic_name=eponine scaffold_121 . repeat_region 119280 119322 . ? . description=trf scaffold_121 ensembl protein_coding_gene 119448 121039 . - . ID=Phyra40639;biotype=protein_coding;external_name=gwEuk.121.66.1;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 119448 121039 . - . ID=Phyra40639;Parent=Phyra40639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 119448 119847 . - 0 ID=Phyra40639;Parent=Phyra40639;rank=2 scaffold_121 . exon 119448 119847 . - . ID=Phyra40639.2;Parent=Phyra40639;constitutive=1;ensembl_phase=2;rank=2 scaffold_121 . CDS 120837 121039 . - 0 ID=Phyra40639;Parent=Phyra40639;rank=1 scaffold_121 . exon 120837 121039 . - . ID=Phyra40639.1;Parent=Phyra40639;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_121 ensembl protein_coding_gene 115370 118108 . - . ID=Phyra84706;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_121000033;logic_name=jgi_phyra1 scaffold_121 ensembl transcript 115370 118108 . - . ID=Phyra84706;Parent=Phyra84706;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_121 . CDS 115370 115385 . - 0 ID=Phyra84706;Parent=Phyra84706;rank=7 scaffold_121 . exon 115370 115385 . - . ID=Phyra84706.7;Parent=Phyra84706;constitutive=1;ensembl_phase=2;rank=7 scaffold_121 . CDS 115411 115599 . - 0 ID=Phyra84706;Parent=Phyra84706;rank=6 scaffold_121 . exon 115411 115599 . - . ID=Phyra84706.6;Parent=Phyra84706;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_121 . CDS 115630 116251 . - 0 ID=Phyra84706;Parent=Phyra84706;rank=5 scaffold_121 . exon 115630 116251 . - . ID=Phyra84706.5;Parent=Phyra84706;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_121 . CDS 117002 117136 . - 0 ID=Phyra84706;Parent=Phyra84706;rank=4 scaffold_121 . exon 117002 117136 . - . ID=Phyra84706.4;Parent=Phyra84706;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_121 . CDS 117233 117270 . - 0 ID=Phyra84706;Parent=Phyra84706;rank=3 scaffold_121 . exon 117233 117270 . - . ID=Phyra84706.3;Parent=Phyra84706;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_121 . CDS 117349 117698 . - 0 ID=Phyra84706;Parent=Phyra84706;rank=2 scaffold_121 . exon 117349 117698 . - . ID=Phyra84706.2;Parent=Phyra84706;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_121 . CDS 117731 118108 . - 0 ID=Phyra84706;Parent=Phyra84706;rank=1 scaffold_121 . exon 117731 118108 . - . ID=Phyra84706.1;Parent=Phyra84706;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_120 1 122205 scaffold_120 . repeat_region 1080 1121 . ? . description=trf scaffold_120 . repeat_region 1088 1122 . ? . description=trf scaffold_120 . repeat_region 1788 5830 . ? . description=dust scaffold_120 . repeat_region 7417 7466 . ? . description=dust scaffold_120 . repeat_region 11556 12827 . + . description=GypsyPi-1c_I-int scaffold_120 . biological_region 12493 12498 0.999 + . logic_name=eponine scaffold_120 . repeat_region 12857 13804 . + . description=GypsyPi-1c_I-int scaffold_120 . biological_region 13608 13613 0.999 - . logic_name=eponine scaffold_120 . repeat_region 14067 14237 . + . description=GypsyPi-1c_I-int scaffold_120 . repeat_region 14430 14502 . + . description=GypsyPi-1c_I-int scaffold_120 ensembl protein_coding_gene 11643 12608 . + . ID=Phyra84653;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_120000001;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 11643 12608 . + . ID=Phyra84653;Parent=Phyra84653;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 11643 12608 . + 0 ID=Phyra84653;Parent=Phyra84653;rank=1 scaffold_120 . exon 11643 12608 . + . ID=Phyra84653.1;Parent=Phyra84653;constitutive=1;rank=1 scaffold_120 . repeat_region 14979 39724 . ? . description=dust scaffold_120 . repeat_region 14979 39724 . ? . description=dust scaffold_120 ensembl protein_coding_gene 41305 42498 . - . ID=Phyra84654;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_120000002;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 41305 42498 . - . ID=Phyra84654;Parent=Phyra84654;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 41305 42498 . - 0 ID=Phyra84654;Parent=Phyra84654;rank=1 scaffold_120 . exon 41305 42498 . - . ID=Phyra84654.1;Parent=Phyra84654;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 43203 44906 . - . ID=Phyra84655;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_120000003;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 43203 44906 . - . ID=Phyra84655;Parent=Phyra84655;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 43203 44337 . - 0 ID=Phyra84655;Parent=Phyra84655;rank=3 scaffold_120 . exon 43203 44337 . - . ID=Phyra84655.3;Parent=Phyra84655;constitutive=1;ensembl_phase=2;rank=3 scaffold_120 . CDS 44425 44481 . - 0 ID=Phyra84655;Parent=Phyra84655;rank=2 scaffold_120 . exon 44425 44481 . - . ID=Phyra84655.2;Parent=Phyra84655;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_120 . CDS 44587 44906 . - 0 ID=Phyra84655;Parent=Phyra84655;rank=1 scaffold_120 . exon 44587 44906 . - . ID=Phyra84655.1;Parent=Phyra84655;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_120 . biological_region 47168 47169 0.999 - . logic_name=eponine scaffold_120 . biological_region 47584 47585 0.999 - . logic_name=eponine scaffold_120 ensembl protein_coding_gene 51952 52800 . + . ID=Phyra40544;biotype=protein_coding;external_name=gwEuk.120.1.1;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 51952 52800 . + . ID=Phyra40544;Parent=Phyra40544;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 51952 52800 . + 0 ID=Phyra40544;Parent=Phyra40544;rank=1 scaffold_120 . exon 51952 52800 . + . ID=Phyra40544.1;Parent=Phyra40544;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 49548 50481 . - . ID=Phyra84656;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_120000004;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 49548 50481 . - . ID=Phyra84656;Parent=Phyra84656;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 49548 49561 . - 0 ID=Phyra84656;Parent=Phyra84656;rank=2 scaffold_120 . exon 49548 49561 . - . ID=Phyra84656.2;Parent=Phyra84656;constitutive=1;ensembl_phase=1;rank=2 scaffold_120 . CDS 49602 50481 . - 0 ID=Phyra84656;Parent=Phyra84656;rank=1 scaffold_120 . exon 49602 50481 . - . ID=Phyra84656.1;Parent=Phyra84656;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_120 ensembl protein_coding_gene 50616 51725 . + . ID=Phyra84657;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_120000005;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 50616 51725 . + . ID=Phyra84657;Parent=Phyra84657;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 50616 50665 . + 0 ID=Phyra84657;Parent=Phyra84657;rank=1 scaffold_120 . exon 50616 50665 . + . ID=Phyra84657.1;Parent=Phyra84657;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_120 . CDS 50756 51141 . + 0 ID=Phyra84657;Parent=Phyra84657;rank=2 scaffold_120 . exon 50756 51141 . + . ID=Phyra84657.2;Parent=Phyra84657;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_120 . CDS 51212 51626 . + 0 ID=Phyra84657;Parent=Phyra84657;rank=3 scaffold_120 . exon 51212 51626 . + . ID=Phyra84657.3;Parent=Phyra84657;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_120 . CDS 51713 51725 . + 0 ID=Phyra84657;Parent=Phyra84657;rank=4 scaffold_120 . exon 51713 51725 . + . ID=Phyra84657.4;Parent=Phyra84657;constitutive=1;ensembl_phase=2;rank=4 scaffold_120 ensembl protein_coding_gene 55392 55877 . + . ID=Phyra84658;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_120000006;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 55392 55877 . + . ID=Phyra84658;Parent=Phyra84658;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 55392 55877 . + 0 ID=Phyra84658;Parent=Phyra84658;rank=1 scaffold_120 . exon 55392 55877 . + . ID=Phyra84658.1;Parent=Phyra84658;constitutive=1;rank=1 scaffold_120 . repeat_region 65570 65611 . ? . description=trf scaffold_120 ensembl protein_coding_gene 56598 57092 . + . ID=Phyra84659;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_120000007;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 56598 57092 . + . ID=Phyra84659;Parent=Phyra84659;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 56598 57092 . + 0 ID=Phyra84659;Parent=Phyra84659;rank=1 scaffold_120 . exon 56598 57092 . + . ID=Phyra84659.1;Parent=Phyra84659;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 57546 58073 . + . ID=Phyra84660;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_120000008;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 57546 58073 . + . ID=Phyra84660;Parent=Phyra84660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 57546 58073 . + 0 ID=Phyra84660;Parent=Phyra84660;rank=1 scaffold_120 . exon 57546 58073 . + . ID=Phyra84660.1;Parent=Phyra84660;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 58503 60125 . - . ID=Phyra84661;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_120000009;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 58503 60125 . - . ID=Phyra84661;Parent=Phyra84661;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 58503 60125 . - 0 ID=Phyra84661;Parent=Phyra84661;rank=1 scaffold_120 . exon 58503 60125 . - . ID=Phyra84661.1;Parent=Phyra84661;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 60642 62390 . - . ID=Phyra84662;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_120000010;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 60642 62390 . - . ID=Phyra84662;Parent=Phyra84662;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 60642 62390 . - 0 ID=Phyra84662;Parent=Phyra84662;rank=1 scaffold_120 . exon 60642 62390 . - . ID=Phyra84662.1;Parent=Phyra84662;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 63204 64838 . - . ID=Phyra84663;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_120000011;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 63204 64838 . - . ID=Phyra84663;Parent=Phyra84663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 63204 64838 . - 0 ID=Phyra84663;Parent=Phyra84663;rank=1 scaffold_120 . exon 63204 64838 . - . ID=Phyra84663.1;Parent=Phyra84663;constitutive=1;rank=1 scaffold_120 . biological_region 65810 65813 0.999 - . logic_name=eponine scaffold_120 . repeat_region 66024 76948 . ? . description=dust scaffold_120 . repeat_region 83950 83985 . ? . description=trf scaffold_120 ensembl pseudogene 76958 77325 . - . ID=Phyra40546;biotype=pseudogene;external_name=gwEuk.120.3.1;logic_name=jgi_phyra1 scaffold_120 ensembl pseudogene 76958 77325 . - . ID=Phyra40546;Parent=Phyra40546;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_120 . exon 76958 77325 . - . ID=Phyra40546.1;Parent=Phyra40546;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_120 ensembl protein_coding_gene 77317 77877 . + . ID=Phyra40547;biotype=protein_coding;external_name=gwEuk.120.4.1;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 77317 77877 . + . ID=Phyra40547;Parent=Phyra40547;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 77317 77877 . + 0 ID=Phyra40547;Parent=Phyra40547;rank=1 scaffold_120 . exon 77317 77877 . + . ID=Phyra40547.1;Parent=Phyra40547;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 80526 81197 . + . ID=Phyra40548;biotype=protein_coding;external_name=gwEuk.120.5.1;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 80526 81197 . + . ID=Phyra40548;Parent=Phyra40548;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 80526 81197 . + 0 ID=Phyra40548;Parent=Phyra40548;rank=1 scaffold_120 . exon 80526 81197 . + . ID=Phyra40548.1;Parent=Phyra40548;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 83188 84649 . - . ID=Phyra84667;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_120000015;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 83188 84649 . - . ID=Phyra84667;Parent=Phyra84667;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 83188 83267 . - 0 ID=Phyra84667;Parent=Phyra84667;rank=3 scaffold_120 . exon 83188 83267 . - . ID=Phyra84667.3;Parent=Phyra84667;constitutive=1;ensembl_phase=1;rank=3 scaffold_120 . CDS 83356 83482 . - 0 ID=Phyra84667;Parent=Phyra84667;rank=2 scaffold_120 . exon 83356 83482 . - . ID=Phyra84667.2;Parent=Phyra84667;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_120 . CDS 83546 84649 . - 0 ID=Phyra84667;Parent=Phyra84667;rank=1 scaffold_120 . exon 83546 84649 . - . ID=Phyra84667.1;Parent=Phyra84667;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 82271 82963 . + . ID=Phyra96906;biotype=protein_coding;external_name=C_scaffold_120000002;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 82271 82963 . + . ID=Phyra96906;Parent=Phyra96906;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 82271 82658 . + 0 ID=Phyra96906;Parent=Phyra96906;rank=1 scaffold_120 . exon 82271 82658 . + . ID=Phyra96906.1;Parent=Phyra96906;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_120 . CDS 82746 82963 . + 0 ID=Phyra96906;Parent=Phyra96906;rank=2 scaffold_120 . exon 82746 82963 . + . ID=Phyra96906.2;Parent=Phyra96906;constitutive=1;ensembl_phase=1;rank=2 scaffold_120 . biological_region 85830 85833 0.999 + . logic_name=eponine scaffold_120 . biological_region 86201 86205 0.999 + . logic_name=eponine scaffold_120 ensembl protein_coding_gene 90229 90797 . + . ID=Phyra40551;biotype=protein_coding;external_name=gwEuk.120.8.1;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 90229 90797 . + . ID=Phyra40551;Parent=Phyra40551;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 90229 90300 . + 0 ID=Phyra40551;Parent=Phyra40551;rank=1 scaffold_120 . exon 90229 90300 . + . ID=Phyra40551.1;Parent=Phyra40551;constitutive=1;rank=1 scaffold_120 . CDS 90363 90425 . + 0 ID=Phyra40551;Parent=Phyra40551;rank=2 scaffold_120 . exon 90363 90425 . + . ID=Phyra40551.2;Parent=Phyra40551;constitutive=1;rank=2 scaffold_120 . CDS 90496 90560 . + 0 ID=Phyra40551;Parent=Phyra40551;rank=3 scaffold_120 . exon 90496 90560 . + . ID=Phyra40551.3;Parent=Phyra40551;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_120 . CDS 90632 90660 . + 0 ID=Phyra40551;Parent=Phyra40551;rank=4 scaffold_120 . exon 90632 90660 . + . ID=Phyra40551.4;Parent=Phyra40551;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_120 . CDS 90730 90797 . + 0 ID=Phyra40551;Parent=Phyra40551;rank=5 scaffold_120 . exon 90730 90797 . + . ID=Phyra40551.5;Parent=Phyra40551;constitutive=1;ensembl_phase=1;rank=5 scaffold_120 ensembl protein_coding_gene 85072 85770 . - . ID=Phyra84668;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_120000016;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 85072 85770 . - . ID=Phyra84668;Parent=Phyra84668;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 85072 85770 . - 0 ID=Phyra84668;Parent=Phyra84668;rank=1 scaffold_120 . exon 85072 85770 . - . ID=Phyra84668.1;Parent=Phyra84668;constitutive=1;rank=1 scaffold_120 . repeat_region 101055 101104 . ? . description=dust scaffold_120 . repeat_region 103020 114069 . ? . description=dust scaffold_120 ensembl protein_coding_gene 94571 95920 . - . ID=Phyra40557;biotype=protein_coding;external_name=gwEuk.120.14.1;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 94571 95920 . - . ID=Phyra40557;Parent=Phyra40557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 94571 94732 . - 0 ID=Phyra40557;Parent=Phyra40557;rank=6 scaffold_120 . exon 94571 94732 . - . ID=Phyra40557.6;Parent=Phyra40557;constitutive=1;rank=6 scaffold_120 . CDS 94816 94851 . - 0 ID=Phyra40557;Parent=Phyra40557;rank=5 scaffold_120 . exon 94816 94851 . - . ID=Phyra40557.5;Parent=Phyra40557;constitutive=1;rank=5 scaffold_120 . CDS 94921 94994 . - 0 ID=Phyra40557;Parent=Phyra40557;rank=4 scaffold_120 . exon 94921 94994 . - . ID=Phyra40557.4;Parent=Phyra40557;constitutive=1;ensembl_phase=1;rank=4 scaffold_120 . CDS 95040 95205 . - 0 ID=Phyra40557;Parent=Phyra40557;rank=3 scaffold_120 . exon 95040 95205 . - . ID=Phyra40557.3;Parent=Phyra40557;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_120 . CDS 95288 95539 . - 0 ID=Phyra40557;Parent=Phyra40557;rank=2 scaffold_120 . exon 95288 95539 . - . ID=Phyra40557.2;Parent=Phyra40557;constitutive=1;rank=2 scaffold_120 . CDS 95597 95920 . - 0 ID=Phyra40557;Parent=Phyra40557;rank=1 scaffold_120 . exon 95597 95920 . - . ID=Phyra40557.1;Parent=Phyra40557;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 102268 103011 . + . ID=Phyra40566;biotype=protein_coding;external_name=gwEuk.120.23.1;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 102268 103011 . + . ID=Phyra40566;Parent=Phyra40566;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 102268 103011 . + 0 ID=Phyra40566;Parent=Phyra40566;rank=1 scaffold_120 . exon 102268 103011 . + . ID=Phyra40566.1;Parent=Phyra40566;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 97057 101439 . + . ID=Phyra72258;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_120000001;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 97057 101439 . + . ID=Phyra72258;Parent=Phyra72258;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 97057 97214 . + 0 ID=Phyra72258;Parent=Phyra72258;rank=1 scaffold_120 . exon 97057 97214 . + . ID=Phyra72258.1;Parent=Phyra72258;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_120 . CDS 97280 97517 . + 0 ID=Phyra72258;Parent=Phyra72258;rank=2 scaffold_120 . exon 97280 97517 . + . ID=Phyra72258.2;Parent=Phyra72258;constitutive=1;ensembl_phase=2;rank=2 scaffold_120 . CDS 97597 101049 . + 0 ID=Phyra72258;Parent=Phyra72258;rank=3 scaffold_120 . exon 97597 101049 . + . ID=Phyra72258.3;Parent=Phyra72258;constitutive=1;rank=3 scaffold_120 . CDS 101155 101439 . + 0 ID=Phyra72258;Parent=Phyra72258;rank=4 scaffold_120 . exon 101155 101439 . + . ID=Phyra72258.4;Parent=Phyra72258;constitutive=1;rank=4 scaffold_120 . repeat_region 103020 114069 . ? . description=dust scaffold_120 . biological_region 119997 119997 0.999 + . logic_name=eponine scaffold_120 ensembl protein_coding_gene 114315 118088 . + . ID=Phyra84672;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_120000020;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 114315 118088 . + . ID=Phyra84672;Parent=Phyra84672;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 114315 118088 . + 0 ID=Phyra84672;Parent=Phyra84672;rank=1 scaffold_120 . exon 114315 118088 . + . ID=Phyra84672.1;Parent=Phyra84672;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 118463 119082 . + . ID=Phyra84673;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_120000021;logic_name=jgi_phyra1 scaffold_120 ensembl transcript 118463 119082 . + . ID=Phyra84673;Parent=Phyra84673;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_120 . CDS 118463 118989 . + 0 ID=Phyra84673;Parent=Phyra84673;rank=1 scaffold_120 . exon 118463 118989 . + . ID=Phyra84673.1;Parent=Phyra84673;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_120 . CDS 119067 119082 . + 0 ID=Phyra84673;Parent=Phyra84673;rank=2 scaffold_120 . exon 119067 119082 . + . ID=Phyra84673.2;Parent=Phyra84673;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_107 1 125070 scaffold_107 . biological_region 43 45 0.999 + . logic_name=eponine scaffold_107 . repeat_region 459 512 . ? . description=dust scaffold_107 . biological_region 588 589 0.999 + . logic_name=eponine scaffold_107 . biological_region 927 931 0.999 - . logic_name=eponine scaffold_107 . biological_region 1628 1632 0.999 + . logic_name=eponine scaffold_107 . biological_region 1811 1819 0.999 + . logic_name=eponine scaffold_107 . biological_region 3601 3606 0.999 - . logic_name=eponine scaffold_107 . biological_region 3635 3635 0.999 + . logic_name=eponine scaffold_107 . repeat_region 4520 4754 . ? . description=trf scaffold_107 . repeat_region 9150 9157 . ? . description=dust scaffold_107 ensembl tRNA_gene 526 598 . + . ID=EPrPRAG00000000099;biotype=tRNA;description=tRNA-Ile for anticodon UAU [Source:TRNASCAN_SE%3BAcc:tRNA-Ile];external_name=tRNA-Ile;logic_name=ncrna_eg scaffold_107 ensembl transcript 526 598 . + . ID=EPrPRAT00000000099;Parent=EPrPRAG00000000099;biotype=tRNA;logic_name=ncrna_eg scaffold_107 . exon 526 598 . + . ID=EPrPRAE00000000099;Parent=EPrPRAT00000000099;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 ensembl protein_coding_gene 725 2291 . - . ID=Phyra84224;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000001;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 725 2291 . - . ID=Phyra84224;Parent=Phyra84224;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 725 828 . - 0 ID=Phyra84224;Parent=Phyra84224;rank=4 scaffold_107 . exon 725 828 . - . ID=Phyra84224.4;Parent=Phyra84224;constitutive=1;ensembl_phase=1;rank=4 scaffold_107 . CDS 1151 1315 . - 0 ID=Phyra84224;Parent=Phyra84224;rank=3 scaffold_107 . exon 1151 1315 . - . ID=Phyra84224.3;Parent=Phyra84224;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_107 . CDS 1340 1357 . - 0 ID=Phyra84224;Parent=Phyra84224;rank=2 scaffold_107 . exon 1340 1357 . - . ID=Phyra84224.2;Parent=Phyra84224;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_107 . CDS 1412 2291 . - 0 ID=Phyra84224;Parent=Phyra84224;rank=1 scaffold_107 . exon 1412 2291 . - . ID=Phyra84224.1;Parent=Phyra84224;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 ensembl protein_coding_gene 3419 5404 . + . ID=Phyra84225;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000002;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 3419 5404 . + . ID=Phyra84225;Parent=Phyra84225;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 3419 5404 . + 0 ID=Phyra84225;Parent=Phyra84225;rank=1 scaffold_107 . exon 3419 5404 . + . ID=Phyra84225.1;Parent=Phyra84225;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 6329 7180 . - . ID=Phyra84226;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000003;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 6329 7180 . - . ID=Phyra84226;Parent=Phyra84226;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 6329 7180 . - 0 ID=Phyra84226;Parent=Phyra84226;rank=1 scaffold_107 . exon 6329 7180 . - . ID=Phyra84226.1;Parent=Phyra84226;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 9202 10264 . - . ID=Phyra84227;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000004;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 9202 10264 . - . ID=Phyra84227;Parent=Phyra84227;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 9202 9252 . - 0 ID=Phyra84227;Parent=Phyra84227;rank=3 scaffold_107 . exon 9202 9252 . - . ID=Phyra84227.3;Parent=Phyra84227;constitutive=1;rank=3 scaffold_107 . CDS 9314 9385 . - 0 ID=Phyra84227;Parent=Phyra84227;rank=2 scaffold_107 . exon 9314 9385 . - . ID=Phyra84227.2;Parent=Phyra84227;constitutive=1;rank=2 scaffold_107 . CDS 9569 10264 . - 0 ID=Phyra84227;Parent=Phyra84227;rank=1 scaffold_107 . exon 9569 10264 . - . ID=Phyra84227.1;Parent=Phyra84227;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 15495 16218 . - . ID=Phyra84230;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000007;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 15495 16218 . - . ID=Phyra84230;Parent=Phyra84230;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 15495 15583 . - 0 ID=Phyra84230;Parent=Phyra84230;rank=4 scaffold_107 . exon 15495 15583 . - . ID=Phyra84230.4;Parent=Phyra84230;constitutive=1;ensembl_phase=1;rank=4 scaffold_107 . CDS 15660 15810 . - 0 ID=Phyra84230;Parent=Phyra84230;rank=3 scaffold_107 . exon 15660 15810 . - . ID=Phyra84230.3;Parent=Phyra84230;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_107 . CDS 15882 15944 . - 0 ID=Phyra84230;Parent=Phyra84230;rank=2 scaffold_107 . exon 15882 15944 . - . ID=Phyra84230.2;Parent=Phyra84230;constitutive=1;rank=2 scaffold_107 . CDS 16015 16218 . - 0 ID=Phyra84230;Parent=Phyra84230;rank=1 scaffold_107 . exon 16015 16218 . - . ID=Phyra84230.1;Parent=Phyra84230;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 10754 12720 . + . ID=Phyra96788;biotype=protein_coding;external_name=C_scaffold_107000001;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 10754 12720 . + . ID=Phyra96788;Parent=Phyra96788;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 10754 11044 . + 0 ID=Phyra96788;Parent=Phyra96788;rank=1 scaffold_107 . exon 10754 11044 . + . ID=Phyra96788.1;Parent=Phyra96788;constitutive=1;rank=1 scaffold_107 . CDS 11115 11285 . + 0 ID=Phyra96788;Parent=Phyra96788;rank=2 scaffold_107 . exon 11115 11285 . + . ID=Phyra96788.2;Parent=Phyra96788;constitutive=1;rank=2 scaffold_107 . CDS 11355 11461 . + 0 ID=Phyra96788;Parent=Phyra96788;rank=3 scaffold_107 . exon 11355 11461 . + . ID=Phyra96788.3;Parent=Phyra96788;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_107 . CDS 11537 11678 . + 0 ID=Phyra96788;Parent=Phyra96788;rank=4 scaffold_107 . exon 11537 11678 . + . ID=Phyra96788.4;Parent=Phyra96788;constitutive=1;ensembl_phase=2;rank=4 scaffold_107 . CDS 11749 11838 . + 0 ID=Phyra96788;Parent=Phyra96788;rank=5 scaffold_107 . exon 11749 11838 . + . ID=Phyra96788.5;Parent=Phyra96788;constitutive=1;rank=5 scaffold_107 . CDS 11912 12031 . + 0 ID=Phyra96788;Parent=Phyra96788;rank=6 scaffold_107 . exon 11912 12031 . + . ID=Phyra96788.6;Parent=Phyra96788;constitutive=1;rank=6 scaffold_107 . CDS 12173 12391 . + 0 ID=Phyra96788;Parent=Phyra96788;rank=7 scaffold_107 . exon 12173 12391 . + . ID=Phyra96788.7;Parent=Phyra96788;constitutive=1;rank=7 scaffold_107 . CDS 12476 12652 . + 0 ID=Phyra96788;Parent=Phyra96788;rank=8 scaffold_107 . exon 12476 12652 . + . ID=Phyra96788.8;Parent=Phyra96788;constitutive=1;rank=8 scaffold_107 . CDS 12718 12720 . + 0 ID=Phyra96788;Parent=Phyra96788;rank=9 scaffold_107 . exon 12718 12720 . + . ID=Phyra96788.9;Parent=Phyra96788;constitutive=1;rank=9 scaffold_107 ensembl protein_coding_gene 13653 15415 . + . ID=Phyra96789;biotype=protein_coding;external_name=C_scaffold_107000002;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 13653 15415 . + . ID=Phyra96789;Parent=Phyra96789;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 13653 13724 . + 0 ID=Phyra96789;Parent=Phyra96789;rank=1 scaffold_107 . exon 13653 13724 . + . ID=Phyra96789.1;Parent=Phyra96789;constitutive=1;rank=1 scaffold_107 . CDS 13785 13873 . + 0 ID=Phyra96789;Parent=Phyra96789;rank=2 scaffold_107 . exon 13785 13873 . + . ID=Phyra96789.2;Parent=Phyra96789;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_107 . CDS 13940 14318 . + 0 ID=Phyra96789;Parent=Phyra96789;rank=3 scaffold_107 . exon 13940 14318 . + . ID=Phyra96789.3;Parent=Phyra96789;constitutive=1;ensembl_phase=2;rank=3 scaffold_107 . CDS 14451 14618 . + 0 ID=Phyra96789;Parent=Phyra96789;rank=4 scaffold_107 . exon 14451 14618 . + . ID=Phyra96789.4;Parent=Phyra96789;constitutive=1;rank=4 scaffold_107 . CDS 14845 15057 . + 0 ID=Phyra96789;Parent=Phyra96789;rank=5 scaffold_107 . exon 14845 15057 . + . ID=Phyra96789.5;Parent=Phyra96789;constitutive=1;rank=5 scaffold_107 . CDS 15134 15415 . + 0 ID=Phyra96789;Parent=Phyra96789;rank=6 scaffold_107 . exon 15134 15415 . + . ID=Phyra96789.6;Parent=Phyra96789;constitutive=1;rank=6 scaffold_107 ensembl protein_coding_gene 16423 18677 . + . ID=Phyra96791;biotype=protein_coding;external_name=C_scaffold_107000004;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 16423 18677 . + . ID=Phyra96791;Parent=Phyra96791;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 16423 16790 . + 0 ID=Phyra96791;Parent=Phyra96791;rank=1 scaffold_107 . exon 16423 16790 . + . ID=Phyra96791.1;Parent=Phyra96791;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 . CDS 16856 18677 . + 0 ID=Phyra96791;Parent=Phyra96791;rank=2 scaffold_107 . exon 16856 18677 . + . ID=Phyra96791.2;Parent=Phyra96791;constitutive=1;ensembl_phase=2;rank=2 scaffold_107 ensembl protein_coding_gene 18912 20090 . - . ID=Phyra96793;biotype=protein_coding;external_name=C_scaffold_107000006;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 18912 20090 . - . ID=Phyra96793;Parent=Phyra96793;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 18912 19234 . - 0 ID=Phyra96793;Parent=Phyra96793;rank=3 scaffold_107 . exon 18912 19234 . - . ID=Phyra96793.3;Parent=Phyra96793;constitutive=1;ensembl_phase=1;rank=3 scaffold_107 . CDS 19292 19301 . - 0 ID=Phyra96793;Parent=Phyra96793;rank=2 scaffold_107 . CDS 19395 20090 . - 0 ID=Phyra96793;Parent=Phyra96793;rank=1 scaffold_107 . repeat_region 19382 19389 . ? . description=dust scaffold_107 . biological_region 19914 19919 0.999 - . logic_name=eponine scaffold_107 . repeat_region 19967 20001 . ? . description=trf scaffold_107 . biological_region 20606 20608 0.999 - . logic_name=eponine scaffold_107 . repeat_region 20760 20768 . ? . description=dust scaffold_107 . repeat_region 22909 22934 . ? . description=trf scaffold_107 . biological_region 27005 27008 0.999 + . logic_name=eponine scaffold_107 . biological_region 27931 27933 0.999 - . logic_name=eponine scaffold_107 . biological_region 27984 27985 0.999 + . logic_name=eponine scaffold_107 ensembl protein_coding_gene 27703 28209 . - . ID=Phyra39435;biotype=protein_coding;external_name=gwEuk.107.9.1;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 27703 28209 . - . ID=Phyra39435;Parent=Phyra39435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 27703 28209 . - 0 ID=Phyra39435;Parent=Phyra39435;rank=1 scaffold_107 . exon 27703 28209 . - . ID=Phyra39435.1;Parent=Phyra39435;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 20283 20756 . + . ID=Phyra84233;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000010;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 20283 20756 . + . ID=Phyra84233;Parent=Phyra84233;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 20283 20756 . + 0 ID=Phyra84233;Parent=Phyra84233;rank=1 scaffold_107 . exon 20283 20756 . + . ID=Phyra84233.1;Parent=Phyra84233;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 22026 27428 . - . ID=Phyra84234;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000011;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 22026 27428 . - . ID=Phyra84234;Parent=Phyra84234;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 22026 27428 . - 0 ID=Phyra84234;Parent=Phyra84234;rank=1 scaffold_107 . exon 22026 27428 . - . ID=Phyra84234.1;Parent=Phyra84234;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 28256 29263 . - . ID=Phyra84236;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000013;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 28256 29263 . - . ID=Phyra84236;Parent=Phyra84236;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 28256 28869 . - 0 ID=Phyra84236;Parent=Phyra84236;rank=3 scaffold_107 . exon 28256 28869 . - . ID=Phyra84236.3;Parent=Phyra84236;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_107 . CDS 28935 29074 . - 0 ID=Phyra84236;Parent=Phyra84236;rank=2 scaffold_107 . CDS 29149 29263 . - 0 ID=Phyra84236;Parent=Phyra84236;rank=1 scaffold_107 . exon 19292 19301 . - . ID=Phyra96793.2;Parent=Phyra96793;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_107 . exon 19395 20090 . - . ID=Phyra96793.1;Parent=Phyra96793;constitutive=1;rank=1 scaffold_107 . exon 28935 29074 . - . ID=Phyra84236.2;Parent=Phyra84236;constitutive=1;ensembl_phase=1;rank=2 scaffold_107 . exon 29149 29263 . - . ID=Phyra84236.1;Parent=Phyra84236;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 ensembl protein_coding_gene 29650 30309 . - . ID=Phyra84237;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000014;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 29650 30309 . - . ID=Phyra84237;Parent=Phyra84237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 29650 29991 . - 0 ID=Phyra84237;Parent=Phyra84237;rank=2 scaffold_107 . exon 29650 29991 . - . ID=Phyra84237.2;Parent=Phyra84237;constitutive=1;rank=2 scaffold_107 . CDS 30070 30309 . - 0 ID=Phyra84237;Parent=Phyra84237;rank=1 scaffold_107 . exon 30070 30309 . - . ID=Phyra84237.1;Parent=Phyra84237;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 36354 37004 . + . ID=Phyra84241;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000018;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 36354 37004 . + . ID=Phyra84241;Parent=Phyra84241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 36354 36813 . + 0 ID=Phyra84241;Parent=Phyra84241;rank=1 scaffold_107 . exon 36354 36813 . + . ID=Phyra84241.1;Parent=Phyra84241;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 . CDS 36895 37004 . + 0 ID=Phyra84241;Parent=Phyra84241;rank=2 scaffold_107 . exon 36895 37004 . + . ID=Phyra84241.2;Parent=Phyra84241;constitutive=1;ensembl_phase=1;rank=2 scaffold_107 ensembl protein_coding_gene 30518 33501 . + . ID=Phyra96799;biotype=protein_coding;external_name=C_scaffold_107000012;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 30518 33501 . + . ID=Phyra96799;Parent=Phyra96799;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 30518 32963 . + 0 ID=Phyra96799;Parent=Phyra96799;rank=1 scaffold_107 . exon 30518 32963 . + . ID=Phyra96799.1;Parent=Phyra96799;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 . CDS 33108 33501 . + 0 ID=Phyra96799;Parent=Phyra96799;rank=2 scaffold_107 . exon 33108 33501 . + . ID=Phyra96799.2;Parent=Phyra96799;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_107 . biological_region 38565 38567 0.999 + . logic_name=eponine scaffold_107 . biological_region 44211 44216 0.999 - . logic_name=eponine scaffold_107 . repeat_region 53013 53021 . ? . description=dust scaffold_107 ensembl protein_coding_gene 51941 52958 . - . ID=Phyra84242;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000019;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 51941 52958 . - . ID=Phyra84242;Parent=Phyra84242;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 51941 51949 . - 0 ID=Phyra84242;Parent=Phyra84242;rank=2 scaffold_107 . exon 51941 51949 . - . ID=Phyra84242.2;Parent=Phyra84242;constitutive=1;rank=2 scaffold_107 . CDS 52047 52958 . - 0 ID=Phyra84242;Parent=Phyra84242;rank=1 scaffold_107 . exon 52047 52958 . - . ID=Phyra84242.1;Parent=Phyra84242;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 53071 53569 . + . ID=Phyra84243;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000020;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 53071 53569 . + . ID=Phyra84243;Parent=Phyra84243;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 53071 53438 . + 0 ID=Phyra84243;Parent=Phyra84243;rank=1 scaffold_107 . exon 53071 53438 . + . ID=Phyra84243.1;Parent=Phyra84243;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 . CDS 53485 53569 . + 0 ID=Phyra84243;Parent=Phyra84243;rank=2 scaffold_107 . exon 53485 53569 . + . ID=Phyra84243.2;Parent=Phyra84243;constitutive=1;ensembl_phase=2;rank=2 scaffold_107 ensembl protein_coding_gene 55646 59736 . - . ID=Phyra96800;biotype=protein_coding;external_name=C_scaffold_107000013;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 55646 59736 . - . ID=Phyra96800;Parent=Phyra96800;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 55646 55783 . - 0 ID=Phyra96800;Parent=Phyra96800;rank=14 scaffold_107 . exon 55646 55783 . - . ID=Phyra96800.14;Parent=Phyra96800;constitutive=1;rank=14 scaffold_107 . CDS 55832 55963 . - 0 ID=Phyra96800;Parent=Phyra96800;rank=13 scaffold_107 . exon 55832 55963 . - . ID=Phyra96800.13;Parent=Phyra96800;constitutive=1;rank=13 scaffold_107 . CDS 55997 56117 . - 0 ID=Phyra96800;Parent=Phyra96800;rank=12 scaffold_107 . exon 55997 56117 . - . ID=Phyra96800.12;Parent=Phyra96800;constitutive=1;ensembl_phase=2;rank=12 scaffold_107 . CDS 56205 56441 . - 0 ID=Phyra96800;Parent=Phyra96800;rank=11 scaffold_107 . exon 56205 56441 . - . ID=Phyra96800.11;Parent=Phyra96800;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_107 . CDS 56870 56888 . - 0 ID=Phyra96800;Parent=Phyra96800;rank=10 scaffold_107 . exon 56870 56888 . - . ID=Phyra96800.10;Parent=Phyra96800;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_107 . CDS 56990 57056 . - 0 ID=Phyra96800;Parent=Phyra96800;rank=9 scaffold_107 . exon 56990 57056 . - . ID=Phyra96800.9;Parent=Phyra96800;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_107 . CDS 57154 57352 . - 0 ID=Phyra96800;Parent=Phyra96800;rank=8 scaffold_107 . exon 57154 57352 . - . ID=Phyra96800.8;Parent=Phyra96800;constitutive=1;ensembl_phase=2;rank=8 scaffold_107 . CDS 57420 57487 . - 0 ID=Phyra96800;Parent=Phyra96800;rank=7 scaffold_107 . exon 57420 57487 . - . ID=Phyra96800.7;Parent=Phyra96800;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_107 . CDS 57558 57923 . - 0 ID=Phyra96800;Parent=Phyra96800;rank=6 scaffold_107 . exon 57558 57923 . - . ID=Phyra96800.6;Parent=Phyra96800;constitutive=1;rank=6 scaffold_107 . CDS 57954 57957 . - 0 ID=Phyra96800;Parent=Phyra96800;rank=5 scaffold_107 . CDS 58142 58283 . - 0 ID=Phyra96800;Parent=Phyra96800;rank=4 scaffold_107 . CDS 58536 58587 . - 0 ID=Phyra96800;Parent=Phyra96800;rank=3 scaffold_107 . CDS 58618 59210 . - 0 ID=Phyra96800;Parent=Phyra96800;rank=2 scaffold_107 . CDS 59256 59736 . - 0 ID=Phyra96800;Parent=Phyra96800;rank=1 scaffold_107 . biological_region 58122 58127 0.999 + . logic_name=eponine scaffold_107 . biological_region 59626 59628 0.999 + . logic_name=eponine scaffold_107 . biological_region 63114 63118 0.999 - . logic_name=eponine scaffold_107 ensembl protein_coding_gene 62360 63406 . - . ID=Phyra84247;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000024;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 62360 63406 . - . ID=Phyra84247;Parent=Phyra84247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 62360 63406 . - 0 ID=Phyra84247;Parent=Phyra84247;rank=1 scaffold_107 . exon 62360 63406 . - . ID=Phyra84247.1;Parent=Phyra84247;constitutive=1;rank=1 scaffold_107 . exon 57954 57957 . - . ID=Phyra96800.5;Parent=Phyra96800;constitutive=1;ensembl_phase=2;rank=5 scaffold_107 . exon 58142 58283 . - . ID=Phyra96800.4;Parent=Phyra96800;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_107 . exon 58536 58587 . - . ID=Phyra96800.3;Parent=Phyra96800;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_107 . exon 58618 59210 . - . ID=Phyra96800.2;Parent=Phyra96800;constitutive=1;ensembl_phase=1;rank=2 scaffold_107 . exon 59256 59736 . - . ID=Phyra96800.1;Parent=Phyra96800;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 ensembl protein_coding_gene 59894 60921 . + . ID=Phyra96801;biotype=protein_coding;external_name=C_scaffold_107000014;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 59894 60921 . + . ID=Phyra96801;Parent=Phyra96801;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 59894 60015 . + 0 ID=Phyra96801;Parent=Phyra96801;rank=1 scaffold_107 . exon 59894 60015 . + . ID=Phyra96801.1;Parent=Phyra96801;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 . CDS 60043 60689 . + 0 ID=Phyra96801;Parent=Phyra96801;rank=2 scaffold_107 . exon 60043 60689 . + . ID=Phyra96801.2;Parent=Phyra96801;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_107 . CDS 60767 60921 . + 0 ID=Phyra96801;Parent=Phyra96801;rank=3 scaffold_107 . exon 60767 60921 . + . ID=Phyra96801.3;Parent=Phyra96801;constitutive=1;ensembl_phase=1;rank=3 scaffold_107 ensembl protein_coding_gene 72954 74155 . - . ID=Phyra39448;biotype=protein_coding;external_name=gwEuk.107.22.1;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 72954 74155 . - . ID=Phyra39448;Parent=Phyra39448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 72954 73130 . - 0 ID=Phyra39448;Parent=Phyra39448;rank=6 scaffold_107 . exon 72954 73130 . - . ID=Phyra39448.6;Parent=Phyra39448;constitutive=1;rank=6 scaffold_107 . CDS 73230 73349 . - 0 ID=Phyra39448;Parent=Phyra39448;rank=5 scaffold_107 . exon 73230 73349 . - . ID=Phyra39448.5;Parent=Phyra39448;constitutive=1;rank=5 scaffold_107 . CDS 73412 73478 . - 0 ID=Phyra39448;Parent=Phyra39448;rank=4 scaffold_107 . exon 73412 73478 . - . ID=Phyra39448.4;Parent=Phyra39448;constitutive=1;ensembl_phase=2;rank=4 scaffold_107 . CDS 73554 73741 . - 0 ID=Phyra39448;Parent=Phyra39448;rank=3 scaffold_107 . exon 73554 73741 . - . ID=Phyra39448.3;Parent=Phyra39448;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_107 . CDS 73818 74031 . - 0 ID=Phyra39448;Parent=Phyra39448;rank=2 scaffold_107 . exon 73818 74031 . - . ID=Phyra39448.2;Parent=Phyra39448;constitutive=1;ensembl_phase=2;rank=2 scaffold_107 . CDS 74100 74155 . - 0 ID=Phyra39448;Parent=Phyra39448;rank=1 scaffold_107 . exon 74100 74155 . - . ID=Phyra39448.1;Parent=Phyra39448;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 ensembl protein_coding_gene 74096 76288 . - . ID=Phyra84250;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000027;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 74096 76288 . - . ID=Phyra84250;Parent=Phyra84250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 74096 74341 . - 0 ID=Phyra84250;Parent=Phyra84250;rank=5 scaffold_107 . exon 74096 74341 . - . ID=Phyra84250.5;Parent=Phyra84250;constitutive=1;rank=5 scaffold_107 . CDS 74419 74505 . - 0 ID=Phyra84250;Parent=Phyra84250;rank=4 scaffold_107 . exon 74419 74505 . - . ID=Phyra84250.4;Parent=Phyra84250;constitutive=1;rank=4 scaffold_107 . CDS 74569 75447 . - 0 ID=Phyra84250;Parent=Phyra84250;rank=3 scaffold_107 . exon 74569 75447 . - . ID=Phyra84250.3;Parent=Phyra84250;constitutive=1;rank=3 scaffold_107 . CDS 75519 75671 . - 0 ID=Phyra84250;Parent=Phyra84250;rank=2 scaffold_107 . exon 75519 75671 . - . ID=Phyra84250.2;Parent=Phyra84250;constitutive=1;rank=2 scaffold_107 . CDS 75740 76288 . - 0 ID=Phyra84250;Parent=Phyra84250;rank=1 scaffold_107 . exon 75740 76288 . - . ID=Phyra84250.1;Parent=Phyra84250;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 69571 71021 . - . ID=Phyra96802;biotype=protein_coding;external_name=C_scaffold_107000015;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 69571 71021 . - . ID=Phyra96802;Parent=Phyra96802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 69571 69586 . - 0 ID=Phyra96802;Parent=Phyra96802;rank=4 scaffold_107 . exon 69571 69586 . - . ID=Phyra96802.4;Parent=Phyra96802;constitutive=1;ensembl_phase=2;rank=4 scaffold_107 . CDS 69789 69895 . - 0 ID=Phyra96802;Parent=Phyra96802;rank=3 scaffold_107 . exon 69789 69895 . - . ID=Phyra96802.3;Parent=Phyra96802;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_107 . CDS 70250 70806 . - 0 ID=Phyra96802;Parent=Phyra96802;rank=2 scaffold_107 . exon 70250 70806 . - . ID=Phyra96802.2;Parent=Phyra96802;constitutive=1;ensembl_phase=1;rank=2 scaffold_107 . CDS 70883 71021 . - 0 ID=Phyra96802;Parent=Phyra96802;rank=1 scaffold_107 . exon 70883 71021 . - . ID=Phyra96802.1;Parent=Phyra96802;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 ensembl protein_coding_gene 71244 72729 . + . ID=Phyra96803;biotype=protein_coding;external_name=C_scaffold_107000016;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 71244 72729 . + . ID=Phyra96803;Parent=Phyra96803;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 71244 71417 . + 0 ID=Phyra96803;Parent=Phyra96803;rank=1 scaffold_107 . exon 71244 71417 . + . ID=Phyra96803.1;Parent=Phyra96803;constitutive=1;rank=1 scaffold_107 . CDS 71477 71629 . + 0 ID=Phyra96803;Parent=Phyra96803;rank=2 scaffold_107 . exon 71477 71629 . + . ID=Phyra96803.2;Parent=Phyra96803;constitutive=1;rank=2 scaffold_107 . CDS 71685 71806 . + 0 ID=Phyra96803;Parent=Phyra96803;rank=3 scaffold_107 . exon 71685 71806 . + . ID=Phyra96803.3;Parent=Phyra96803;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_107 . CDS 71858 72056 . + 0 ID=Phyra96803;Parent=Phyra96803;rank=4 scaffold_107 . exon 71858 72056 . + . ID=Phyra96803.4;Parent=Phyra96803;constitutive=1;ensembl_phase=2;rank=4 scaffold_107 . CDS 72200 72289 . + 0 ID=Phyra96803;Parent=Phyra96803;rank=5 scaffold_107 . exon 72200 72289 . + . ID=Phyra96803.5;Parent=Phyra96803;constitutive=1;rank=5 scaffold_107 . CDS 72375 72560 . + 0 ID=Phyra96803;Parent=Phyra96803;rank=6 scaffold_107 . exon 72375 72560 . + . ID=Phyra96803.6;Parent=Phyra96803;constitutive=1;rank=6 scaffold_107 . CDS 72727 72729 . + 0 ID=Phyra96803;Parent=Phyra96803;rank=7 scaffold_107 . exon 72727 72729 . + . ID=Phyra96803.7;Parent=Phyra96803;constitutive=1;rank=7 scaffold_107 . biological_region 80050 80057 0.999 - . logic_name=eponine scaffold_107 . biological_region 80064 80067 0.999 + . logic_name=eponine scaffold_107 . biological_region 80128 80132 0.999 + . logic_name=eponine scaffold_107 . biological_region 81165 81166 0.999 - . logic_name=eponine scaffold_107 . biological_region 81423 81427 0.999 - . logic_name=eponine scaffold_107 . biological_region 84726 84729 0.999 - . logic_name=eponine scaffold_107 . biological_region 84755 84757 0.999 + . logic_name=eponine scaffold_107 . repeat_region 84845 84884 . ? . description=trf scaffold_107 . repeat_region 84845 84888 . ? . description=trf scaffold_107 . biological_region 85170 85174 0.999 + . logic_name=eponine scaffold_107 ensembl protein_coding_gene 78418 78798 . + . ID=Phyra39453;biotype=protein_coding;external_name=gwEuk.107.27.1;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 78418 78798 . + . ID=Phyra39453;Parent=Phyra39453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 78418 78798 . + 0 ID=Phyra39453;Parent=Phyra39453;rank=1 scaffold_107 . exon 78418 78798 . + . ID=Phyra39453.1;Parent=Phyra39453;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 79377 80765 . - . ID=Phyra72205;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_107000003;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 79377 80765 . - . ID=Phyra72205;Parent=Phyra72205;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 79377 80765 . - 0 ID=Phyra72205;Parent=Phyra72205;rank=1 scaffold_107 . exon 79377 80765 . - . ID=Phyra72205.1;Parent=Phyra72205;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 83380 84807 . - . ID=Phyra72206;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_107000004;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 83380 84807 . - . ID=Phyra72206;Parent=Phyra72206;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 83380 84807 . - 0 ID=Phyra72206;Parent=Phyra72206;rank=1 scaffold_107 . exon 83380 84807 . - . ID=Phyra72206.1;Parent=Phyra72206;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 81033 82382 . + . ID=Phyra84253;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000030;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 81033 82382 . + . ID=Phyra84253;Parent=Phyra84253;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 81033 82382 . + 0 ID=Phyra84253;Parent=Phyra84253;rank=1 scaffold_107 . exon 81033 82382 . + . ID=Phyra84253.1;Parent=Phyra84253;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 82776 83198 . + . ID=Phyra84254;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000031;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 82776 83198 . + . ID=Phyra84254;Parent=Phyra84254;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 82776 83198 . + 0 ID=Phyra84254;Parent=Phyra84254;rank=1 scaffold_107 . exon 82776 83198 . + . ID=Phyra84254.1;Parent=Phyra84254;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 84922 86646 . + . ID=Phyra84256;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000033;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 84922 86646 . + . ID=Phyra84256;Parent=Phyra84256;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 84922 86646 . + 0 ID=Phyra84256;Parent=Phyra84256;rank=1 scaffold_107 . exon 84922 86646 . + . ID=Phyra84256.1;Parent=Phyra84256;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 86825 89160 . - . ID=Phyra84257;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000034;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 86825 89160 . - . ID=Phyra84257;Parent=Phyra84257;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 86825 88855 . - 0 ID=Phyra84257;Parent=Phyra84257;rank=2 scaffold_107 . exon 86825 88855 . - . ID=Phyra84257.2;Parent=Phyra84257;constitutive=1;rank=2 scaffold_107 . CDS 88939 89160 . - 0 ID=Phyra84257;Parent=Phyra84257;rank=1 scaffold_107 . exon 88939 89160 . - . ID=Phyra84257.1;Parent=Phyra84257;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 96071 97670 . - . ID=Phyra96804;biotype=protein_coding;external_name=C_scaffold_107000017;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 96071 97670 . - . ID=Phyra96804;Parent=Phyra96804;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 96071 96085 . - 0 ID=Phyra96804;Parent=Phyra96804;rank=6 scaffold_107 . exon 96071 96085 . - . ID=Phyra96804.6;Parent=Phyra96804;constitutive=1;rank=6 scaffold_107 . CDS 96228 96430 . - 0 ID=Phyra96804;Parent=Phyra96804;rank=5 scaffold_107 . CDS 96863 97127 . - 0 ID=Phyra96804;Parent=Phyra96804;rank=4 scaffold_107 . CDS 97170 97243 . - 0 ID=Phyra96804;Parent=Phyra96804;rank=3 scaffold_107 . CDS 97271 97589 . - 0 ID=Phyra96804;Parent=Phyra96804;rank=2 scaffold_107 . CDS 97638 97670 . - 0 ID=Phyra96804;Parent=Phyra96804;rank=1 scaffold_107 . biological_region 97377 97380 0.999 - . logic_name=eponine scaffold_107 . biological_region 98734 98734 0.999 - . logic_name=eponine scaffold_107 . biological_region 103600 103604 0.999 + . logic_name=eponine scaffold_107 . biological_region 103775 103776 0.999 - . logic_name=eponine scaffold_107 ensembl protein_coding_gene 99189 99608 . - . ID=Phyra72207;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_107000005;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 99189 99608 . - . ID=Phyra72207;Parent=Phyra72207;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 99189 99608 . - 0 ID=Phyra72207;Parent=Phyra72207;rank=1 scaffold_107 . exon 99189 99608 . - . ID=Phyra72207.1;Parent=Phyra72207;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 100045 100467 . + . ID=Phyra72208;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_107000006;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 100045 100467 . + . ID=Phyra72208;Parent=Phyra72208;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 100045 100467 . + 0 ID=Phyra72208;Parent=Phyra72208;rank=1 scaffold_107 . exon 100045 100467 . + . ID=Phyra72208.1;Parent=Phyra72208;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 97800 98740 . + . ID=Phyra84259;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000036;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 97800 98740 . + . ID=Phyra84259;Parent=Phyra84259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 97800 98552 . + 0 ID=Phyra84259;Parent=Phyra84259;rank=1 scaffold_107 . exon 97800 98552 . + . ID=Phyra84259.1;Parent=Phyra84259;constitutive=1;rank=1 scaffold_107 . CDS 98624 98740 . + 0 ID=Phyra84259;Parent=Phyra84259;rank=2 scaffold_107 . exon 98624 98740 . + . ID=Phyra84259.2;Parent=Phyra84259;constitutive=1;rank=2 scaffold_107 . exon 96228 96430 . - . ID=Phyra96804.5;Parent=Phyra96804;constitutive=1;ensembl_phase=1;rank=5 scaffold_107 . exon 96863 97127 . - . ID=Phyra96804.4;Parent=Phyra96804;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_107 . exon 97170 97243 . - . ID=Phyra96804.3;Parent=Phyra96804;constitutive=1;ensembl_phase=1;rank=3 scaffold_107 . exon 97271 97589 . - . ID=Phyra96804.2;Parent=Phyra96804;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_107 . exon 97638 97670 . - . ID=Phyra96804.1;Parent=Phyra96804;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 100836 103484 . - . ID=Phyra96809;biotype=protein_coding;external_name=C_scaffold_107000022;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 100836 103484 . - . ID=Phyra96809;Parent=Phyra96809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 100836 101171 . - 0 ID=Phyra96809;Parent=Phyra96809;rank=10 scaffold_107 . exon 100836 101171 . - . ID=Phyra96809.10;Parent=Phyra96809;constitutive=1;rank=10 scaffold_107 . CDS 101217 101513 . - 0 ID=Phyra96809;Parent=Phyra96809;rank=9 scaffold_107 . exon 101217 101513 . - . ID=Phyra96809.9;Parent=Phyra96809;constitutive=1;rank=9 scaffold_107 . CDS 101544 101586 . - 0 ID=Phyra96809;Parent=Phyra96809;rank=8 scaffold_107 . exon 101544 101586 . - . ID=Phyra96809.8;Parent=Phyra96809;constitutive=1;ensembl_phase=2;rank=8 scaffold_107 . CDS 101794 101794 . - 0 ID=Phyra96809;Parent=Phyra96809;rank=7 scaffold_107 . exon 101794 101794 . - . ID=Phyra96809.7;Parent=Phyra96809;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_107 . CDS 102201 102436 . - 0 ID=Phyra96809;Parent=Phyra96809;rank=6 scaffold_107 . exon 102201 102436 . - . ID=Phyra96809.6;Parent=Phyra96809;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_107 . CDS 102627 102766 . - 0 ID=Phyra96809;Parent=Phyra96809;rank=5 scaffold_107 . exon 102627 102766 . - . ID=Phyra96809.5;Parent=Phyra96809;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_107 . CDS 102823 102959 . - 0 ID=Phyra96809;Parent=Phyra96809;rank=4 scaffold_107 . exon 102823 102959 . - . ID=Phyra96809.4;Parent=Phyra96809;constitutive=1;ensembl_phase=1;rank=4 scaffold_107 . CDS 102984 103127 . - 0 ID=Phyra96809;Parent=Phyra96809;rank=3 scaffold_107 . exon 102984 103127 . - . ID=Phyra96809.3;Parent=Phyra96809;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_107 . CDS 103201 103299 . - 0 ID=Phyra96809;Parent=Phyra96809;rank=2 scaffold_107 . exon 103201 103299 . - . ID=Phyra96809.2;Parent=Phyra96809;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_107 . CDS 103379 103484 . - 0 ID=Phyra96809;Parent=Phyra96809;rank=1 scaffold_107 . exon 103379 103484 . - . ID=Phyra96809.1;Parent=Phyra96809;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 ensembl protein_coding_gene 103621 104618 . + . ID=Phyra96810;biotype=protein_coding;external_name=C_scaffold_107000023;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 103621 104618 . + . ID=Phyra96810;Parent=Phyra96810;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 103621 103713 . + 0 ID=Phyra96810;Parent=Phyra96810;rank=1 scaffold_107 . exon 103621 103713 . + . ID=Phyra96810.1;Parent=Phyra96810;constitutive=1;rank=1 scaffold_107 . CDS 103741 104493 . + 0 ID=Phyra96810;Parent=Phyra96810;rank=2 scaffold_107 . exon 103741 104493 . + . ID=Phyra96810.2;Parent=Phyra96810;constitutive=1;rank=2 scaffold_107 . CDS 104559 104618 . + 0 ID=Phyra96810;Parent=Phyra96810;rank=3 scaffold_107 . exon 104559 104618 . + . ID=Phyra96810.3;Parent=Phyra96810;constitutive=1;rank=3 scaffold_107 ensembl protein_coding_gene 106960 110768 . - . ID=Phyra96811;biotype=protein_coding;external_name=C_scaffold_107000024;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 106960 110768 . - . ID=Phyra96811;Parent=Phyra96811;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 106960 106979 . - 0 ID=Phyra96811;Parent=Phyra96811;rank=9 scaffold_107 . exon 106960 106979 . - . ID=Phyra96811.9;Parent=Phyra96811;constitutive=1;ensembl_phase=1;rank=9 scaffold_107 . CDS 106999 107079 . - 0 ID=Phyra96811;Parent=Phyra96811;rank=8 scaffold_107 . exon 106999 107079 . - . ID=Phyra96811.8;Parent=Phyra96811;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_107 . CDS 107101 107130 . - 0 ID=Phyra96811;Parent=Phyra96811;rank=7 scaffold_107 . exon 107101 107130 . - . ID=Phyra96811.7;Parent=Phyra96811;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_107 . CDS 107205 107262 . - 0 ID=Phyra96811;Parent=Phyra96811;rank=6 scaffold_107 . exon 107205 107262 . - . ID=Phyra96811.6;Parent=Phyra96811;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_107 . CDS 107331 107516 . - 0 ID=Phyra96811;Parent=Phyra96811;rank=5 scaffold_107 . exon 107331 107516 . - . ID=Phyra96811.5;Parent=Phyra96811;constitutive=1;rank=5 scaffold_107 . CDS 107600 107808 . - 0 ID=Phyra96811;Parent=Phyra96811;rank=4 scaffold_107 . exon 107600 107808 . - . ID=Phyra96811.4;Parent=Phyra96811;constitutive=1;ensembl_phase=1;rank=4 scaffold_107 . CDS 108192 108973 . - 0 ID=Phyra96811;Parent=Phyra96811;rank=3 scaffold_107 . exon 108192 108973 . - . ID=Phyra96811.3;Parent=Phyra96811;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_107 . CDS 109282 110165 . - 0 ID=Phyra96811;Parent=Phyra96811;rank=2 scaffold_107 . exon 109282 110165 . - . ID=Phyra96811.2;Parent=Phyra96811;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_107 . CDS 110223 110768 . - 0 ID=Phyra96811;Parent=Phyra96811;rank=1 scaffold_107 . exon 110223 110768 . - . ID=Phyra96811.1;Parent=Phyra96811;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 110937 112272 . - . ID=Phyra96812;biotype=protein_coding;external_name=C_scaffold_107000025;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 110937 112272 . - . ID=Phyra96812;Parent=Phyra96812;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 110937 111069 . - 0 ID=Phyra96812;Parent=Phyra96812;rank=7 scaffold_107 . exon 110937 111069 . - . ID=Phyra96812.7;Parent=Phyra96812;constitutive=1;ensembl_phase=2;rank=7 scaffold_107 . CDS 111131 111216 . - 0 ID=Phyra96812;Parent=Phyra96812;rank=6 scaffold_107 . exon 111131 111216 . - . ID=Phyra96812.6;Parent=Phyra96812;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_107 . CDS 111298 111366 . - 0 ID=Phyra96812;Parent=Phyra96812;rank=5 scaffold_107 . exon 111298 111366 . - . ID=Phyra96812.5;Parent=Phyra96812;constitutive=1;rank=5 scaffold_107 . CDS 111388 111497 . - 0 ID=Phyra96812;Parent=Phyra96812;rank=4 scaffold_107 . exon 111388 111497 . - . ID=Phyra96812.4;Parent=Phyra96812;constitutive=1;ensembl_phase=1;rank=4 scaffold_107 . CDS 111578 111686 . - 0 ID=Phyra96812;Parent=Phyra96812;rank=3 scaffold_107 . exon 111578 111686 . - . ID=Phyra96812.3;Parent=Phyra96812;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_107 . CDS 111744 111827 . - 0 ID=Phyra96812;Parent=Phyra96812;rank=2 scaffold_107 . exon 111744 111827 . - . ID=Phyra96812.2;Parent=Phyra96812;constitutive=1;rank=2 scaffold_107 . CDS 111889 112272 . - 0 ID=Phyra96812;Parent=Phyra96812;rank=1 scaffold_107 . exon 111889 112272 . - . ID=Phyra96812.1;Parent=Phyra96812;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 112424 115980 . + . ID=Phyra96815;biotype=protein_coding;external_name=C_scaffold_107000028;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 112424 115980 . + . ID=Phyra96815;Parent=Phyra96815;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 112424 112539 . + 0 ID=Phyra96815;Parent=Phyra96815;rank=1 scaffold_107 . exon 112424 112539 . + . ID=Phyra96815.1;Parent=Phyra96815;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 . CDS 112633 112705 . + 0 ID=Phyra96815;Parent=Phyra96815;rank=2 scaffold_107 . exon 112633 112705 . + . ID=Phyra96815.2;Parent=Phyra96815;constitutive=1;ensembl_phase=2;rank=2 scaffold_107 . CDS 112772 112943 . + 0 ID=Phyra96815;Parent=Phyra96815;rank=3 scaffold_107 . exon 112772 112943 . + . ID=Phyra96815.3;Parent=Phyra96815;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_107 . CDS 113024 113156 . + 0 ID=Phyra96815;Parent=Phyra96815;rank=4 scaffold_107 . exon 113024 113156 . + . ID=Phyra96815.4;Parent=Phyra96815;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_107 . CDS 113195 113232 . + 0 ID=Phyra96815;Parent=Phyra96815;rank=5 scaffold_107 . exon 113195 113232 . + . ID=Phyra96815.5;Parent=Phyra96815;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_107 . CDS 113418 113514 . + 0 ID=Phyra96815;Parent=Phyra96815;rank=6 scaffold_107 . exon 113418 113514 . + . ID=Phyra96815.6;Parent=Phyra96815;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_107 . CDS 113752 113915 . + 0 ID=Phyra96815;Parent=Phyra96815;rank=7 scaffold_107 . exon 113752 113915 . + . ID=Phyra96815.7;Parent=Phyra96815;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_107 . CDS 113940 114090 . + 0 ID=Phyra96815;Parent=Phyra96815;rank=8 scaffold_107 . exon 113940 114090 . + . ID=Phyra96815.8;Parent=Phyra96815;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_107 . CDS 114203 114257 . + 0 ID=Phyra96815;Parent=Phyra96815;rank=9 scaffold_107 . exon 114203 114257 . + . ID=Phyra96815.9;Parent=Phyra96815;constitutive=1;ensembl_phase=2;rank=9 scaffold_107 . CDS 114359 114946 . + 0 ID=Phyra96815;Parent=Phyra96815;rank=10 scaffold_107 . exon 114359 114946 . + . ID=Phyra96815.10;Parent=Phyra96815;constitutive=1;rank=10 scaffold_107 . CDS 115717 115980 . + 0 ID=Phyra96815;Parent=Phyra96815;rank=11 scaffold_107 . biological_region 119069 119069 0.999 - . logic_name=eponine scaffold_107 . biological_region 119313 119315 0.999 + . logic_name=eponine scaffold_107 . repeat_region 122381 122434 . ? . description=trf scaffold_107 ensembl protein_coding_gene 124126 124893 . + . ID=Phyra84270;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_107000047;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 124126 124893 . + . ID=Phyra84270;Parent=Phyra84270;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 124126 124893 . + 0 ID=Phyra84270;Parent=Phyra84270;rank=1 scaffold_107 . exon 124126 124893 . + . ID=Phyra84270.1;Parent=Phyra84270;constitutive=1;rank=1 scaffold_107 . exon 115717 115980 . + . ID=Phyra96815.11;Parent=Phyra96815;constitutive=1;rank=11 scaffold_107 ensembl protein_coding_gene 117118 119816 . - . ID=Phyra96816;biotype=protein_coding;external_name=C_scaffold_107000029;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 117118 119816 . - . ID=Phyra96816;Parent=Phyra96816;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 117118 117128 . - 0 ID=Phyra96816;Parent=Phyra96816;rank=6 scaffold_107 . exon 117118 117128 . - . ID=Phyra96816.6;Parent=Phyra96816;constitutive=1;ensembl_phase=1;rank=6 scaffold_107 . CDS 117167 117462 . - 0 ID=Phyra96816;Parent=Phyra96816;rank=5 scaffold_107 . exon 117167 117462 . - . ID=Phyra96816.5;Parent=Phyra96816;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_107 . CDS 117934 117998 . - 0 ID=Phyra96816;Parent=Phyra96816;rank=4 scaffold_107 . exon 117934 117998 . - . ID=Phyra96816.4;Parent=Phyra96816;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_107 . CDS 118066 118395 . - 0 ID=Phyra96816;Parent=Phyra96816;rank=3 scaffold_107 . exon 118066 118395 . - . ID=Phyra96816.3;Parent=Phyra96816;constitutive=1;rank=3 scaffold_107 . CDS 118723 119520 . - 0 ID=Phyra96816;Parent=Phyra96816;rank=2 scaffold_107 . exon 118723 119520 . - . ID=Phyra96816.2;Parent=Phyra96816;constitutive=1;rank=2 scaffold_107 . CDS 119595 119816 . - 0 ID=Phyra96816;Parent=Phyra96816;rank=1 scaffold_107 . exon 119595 119816 . - . ID=Phyra96816.1;Parent=Phyra96816;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 121879 123990 . + . ID=Phyra96818;biotype=protein_coding;external_name=C_scaffold_107000031;logic_name=jgi_phyra1 scaffold_107 ensembl transcript 121879 123990 . + . ID=Phyra96818;Parent=Phyra96818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_107 . CDS 121879 122399 . + 0 ID=Phyra96818;Parent=Phyra96818;rank=1 scaffold_107 . exon 121879 122399 . + . ID=Phyra96818.1;Parent=Phyra96818;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 . CDS 122421 122841 . + 0 ID=Phyra96818;Parent=Phyra96818;rank=2 scaffold_107 . exon 122421 122841 . + . ID=Phyra96818.2;Parent=Phyra96818;constitutive=1;ensembl_phase=2;rank=2 scaffold_107 . CDS 122926 122995 . + 0 ID=Phyra96818;Parent=Phyra96818;rank=3 scaffold_107 . exon 122926 122995 . + . ID=Phyra96818.3;Parent=Phyra96818;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_107 . CDS 123098 123990 . + 0 ID=Phyra96818;Parent=Phyra96818;rank=4 scaffold_107 . exon 123098 123990 . + . ID=Phyra96818.4;Parent=Phyra96818;constitutive=1;ensembl_phase=1;rank=4 ##gff-version 3 ##sequence-region scaffold_119 1 129508 scaffold_119 . repeat_region 897 999 . - . description=GypsyPi-1c_I-int scaffold_119 . repeat_region 1209 26667 . ? . description=dust scaffold_119 ensembl protein_coding_gene 47 759 . + . ID=Phyra84635;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_119000001;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 47 759 . + . ID=Phyra84635;Parent=Phyra84635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . exon 47 759 . + . ID=Phyra84635.1;Parent=Phyra84635;constitutive=1;ensembl_phase=-1;rank=1 scaffold_119 . CDS 49 759 . + 0 ID=Phyra84635;Parent=Phyra84635;rank=1 scaffold_119 . repeat_region 1209 26667 . ? . description=dust scaffold_119 . repeat_region 27827 27876 . ? . description=dust scaffold_119 . repeat_region 29169 29218 . ? . description=dust scaffold_119 . biological_region 33114 33117 0.999 + . logic_name=eponine scaffold_119 . biological_region 33159 33165 0.999 - . logic_name=eponine scaffold_119 . biological_region 33219 33221 0.999 + . logic_name=eponine scaffold_119 . biological_region 33227 33230 0.999 - . logic_name=eponine scaffold_119 . biological_region 33322 33324 0.999 - . logic_name=eponine scaffold_119 . biological_region 34187 34189 0.999 + . logic_name=eponine scaffold_119 . biological_region 34321 34325 0.999 - . logic_name=eponine scaffold_119 . biological_region 35246 35249 0.999 + . logic_name=eponine scaffold_119 . biological_region 35901 35904 0.999 + . logic_name=eponine scaffold_119 . biological_region 36266 36268 0.999 + . logic_name=eponine scaffold_119 . repeat_region 36462 38777 . + . description=GypsyPi-1c_I-int scaffold_119 . biological_region 37738 37741 0.999 + . logic_name=eponine scaffold_119 . biological_region 39266 39269 0.999 - . logic_name=eponine scaffold_119 . biological_region 39749 39751 0.999 + . logic_name=eponine scaffold_119 ensembl protein_coding_gene 30538 33452 . - . ID=Phyra84636;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_119000002;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 30538 33452 . - . ID=Phyra84636;Parent=Phyra84636;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 30538 30588 . - 0 ID=Phyra84636;Parent=Phyra84636;rank=4 scaffold_119 . exon 30538 30588 . - . ID=Phyra84636.4;Parent=Phyra84636;constitutive=1;rank=4 scaffold_119 . CDS 30680 31350 . - 0 ID=Phyra84636;Parent=Phyra84636;rank=3 scaffold_119 . exon 30680 31350 . - . ID=Phyra84636.3;Parent=Phyra84636;constitutive=1;ensembl_phase=1;rank=3 scaffold_119 . CDS 31427 31511 . - 0 ID=Phyra84636;Parent=Phyra84636;rank=2 scaffold_119 . exon 31427 31511 . - . ID=Phyra84636.2;Parent=Phyra84636;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_119 . CDS 32106 33452 . - 0 ID=Phyra84636;Parent=Phyra84636;rank=1 scaffold_119 . exon 32106 33452 . - . ID=Phyra84636.1;Parent=Phyra84636;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 33985 39764 . + . ID=Phyra84637;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_119000003;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 33985 39764 . + . ID=Phyra84637;Parent=Phyra84637;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 33985 34192 . + 0 ID=Phyra84637;Parent=Phyra84637;rank=1 scaffold_119 . exon 33985 34192 . + . ID=Phyra84637.1;Parent=Phyra84637;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_119 . CDS 34330 34743 . + 0 ID=Phyra84637;Parent=Phyra84637;rank=2 scaffold_119 . exon 34330 34743 . + . ID=Phyra84637.2;Parent=Phyra84637;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_119 . CDS 34830 35688 . + 0 ID=Phyra84637;Parent=Phyra84637;rank=3 scaffold_119 . exon 34830 35688 . + . ID=Phyra84637.3;Parent=Phyra84637;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_119 . CDS 35711 36519 . + 0 ID=Phyra84637;Parent=Phyra84637;rank=4 scaffold_119 . exon 35711 36519 . + . ID=Phyra84637.4;Parent=Phyra84637;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_119 . CDS 36556 36772 . + 0 ID=Phyra84637;Parent=Phyra84637;rank=5 scaffold_119 . exon 36556 36772 . + . ID=Phyra84637.5;Parent=Phyra84637;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_119 . CDS 36851 39098 . + 0 ID=Phyra84637;Parent=Phyra84637;rank=6 scaffold_119 . exon 36851 39098 . + . ID=Phyra84637.6;Parent=Phyra84637;constitutive=1;ensembl_phase=2;rank=6 scaffold_119 . CDS 39327 39764 . + 0 ID=Phyra84637;Parent=Phyra84637;rank=7 scaffold_119 . exon 39327 39764 . + . ID=Phyra84637.7;Parent=Phyra84637;constitutive=1;rank=7 scaffold_119 . repeat_region 40035 40608 . ? . description=dust scaffold_119 . repeat_region 44767 44794 . ? . description=trf scaffold_119 . repeat_region 46524 46602 . ? . description=trf scaffold_119 . repeat_region 46555 46623 . ? . description=trf scaffold_119 ensembl protein_coding_gene 49648 49907 . - . ID=Phyra40358;biotype=protein_coding;external_name=gwEuk.119.4.1;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 49648 49907 . - . ID=Phyra40358;Parent=Phyra40358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 49648 49907 . - 0 ID=Phyra40358;Parent=Phyra40358;rank=1 scaffold_119 . exon 49648 49907 . - . ID=Phyra40358.1;Parent=Phyra40358;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_119 ensembl protein_coding_gene 43725 44882 . + . ID=Phyra84638;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_119000004;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 43725 44882 . + . ID=Phyra84638;Parent=Phyra84638;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 43725 43940 . + 0 ID=Phyra84638;Parent=Phyra84638;rank=1 scaffold_119 . exon 43725 43940 . + . ID=Phyra84638.1;Parent=Phyra84638;constitutive=1;rank=1 scaffold_119 . CDS 43999 44011 . + 0 ID=Phyra84638;Parent=Phyra84638;rank=2 scaffold_119 . exon 43999 44011 . + . ID=Phyra84638.2;Parent=Phyra84638;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_119 . CDS 44121 44461 . + 0 ID=Phyra84638;Parent=Phyra84638;rank=3 scaffold_119 . exon 44121 44461 . + . ID=Phyra84638.3;Parent=Phyra84638;constitutive=1;ensembl_phase=1;rank=3 scaffold_119 . CDS 44566 44664 . + 0 ID=Phyra84638;Parent=Phyra84638;rank=4 scaffold_119 . exon 44566 44664 . + . ID=Phyra84638.4;Parent=Phyra84638;constitutive=1;rank=4 scaffold_119 . CDS 44811 44882 . + 0 ID=Phyra84638;Parent=Phyra84638;rank=5 scaffold_119 . exon 44811 44882 . + . ID=Phyra84638.5;Parent=Phyra84638;constitutive=1;rank=5 scaffold_119 . biological_region 54005 54008 0.999 + . logic_name=eponine scaffold_119 ensembl protein_coding_gene 51409 52804 . - . ID=Phyra84639;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_119000005;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 51409 52804 . - . ID=Phyra84639;Parent=Phyra84639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 51409 51419 . - 0 ID=Phyra84639;Parent=Phyra84639;rank=4 scaffold_119 . exon 51409 51419 . - . ID=Phyra84639.4;Parent=Phyra84639;constitutive=1;ensembl_phase=1;rank=4 scaffold_119 . CDS 51485 51843 . - 0 ID=Phyra84639;Parent=Phyra84639;rank=3 scaffold_119 . exon 51485 51843 . - . ID=Phyra84639.3;Parent=Phyra84639;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_119 . CDS 52222 52252 . - 0 ID=Phyra84639;Parent=Phyra84639;rank=2 scaffold_119 . exon 52222 52252 . - . ID=Phyra84639.2;Parent=Phyra84639;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_119 . CDS 52519 52804 . - 0 ID=Phyra84639;Parent=Phyra84639;rank=1 scaffold_119 . exon 52519 52804 . - . ID=Phyra84639.1;Parent=Phyra84639;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_119 . repeat_region 59970 60019 . ? . description=dust scaffold_119 . repeat_region 60204 60212 . ? . description=dust scaffold_119 . repeat_region 66409 66458 . ? . description=dust scaffold_119 ensembl protein_coding_gene 61034 62685 . - . ID=Phyra84640;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_119000006;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 61034 62685 . - . ID=Phyra84640;Parent=Phyra84640;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 61034 61148 . - 0 ID=Phyra84640;Parent=Phyra84640;rank=7 scaffold_119 . exon 61034 61148 . - . ID=Phyra84640.7;Parent=Phyra84640;constitutive=1;ensembl_phase=2;rank=7 scaffold_119 . CDS 61172 61593 . - 0 ID=Phyra84640;Parent=Phyra84640;rank=6 scaffold_119 . exon 61172 61593 . - . ID=Phyra84640.6;Parent=Phyra84640;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_119 . CDS 61657 61792 . - 0 ID=Phyra84640;Parent=Phyra84640;rank=5 scaffold_119 . exon 61657 61792 . - . ID=Phyra84640.5;Parent=Phyra84640;constitutive=1;ensembl_phase=2;rank=5 scaffold_119 . CDS 61862 61932 . - 0 ID=Phyra84640;Parent=Phyra84640;rank=4 scaffold_119 . exon 61862 61932 . - . ID=Phyra84640.4;Parent=Phyra84640;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_119 . CDS 61997 62105 . - 0 ID=Phyra84640;Parent=Phyra84640;rank=3 scaffold_119 . exon 61997 62105 . - . ID=Phyra84640.3;Parent=Phyra84640;constitutive=1;ensembl_phase=2;rank=3 scaffold_119 . CDS 62167 62387 . - 0 ID=Phyra84640;Parent=Phyra84640;rank=2 scaffold_119 . exon 62167 62387 . - . ID=Phyra84640.2;Parent=Phyra84640;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_119 . CDS 62482 62685 . - 0 ID=Phyra84640;Parent=Phyra84640;rank=1 scaffold_119 . exon 62482 62685 . - . ID=Phyra84640.1;Parent=Phyra84640;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 63657 70018 . + . ID=Phyra84641;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_119000007;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 63657 70018 . + . ID=Phyra84641;Parent=Phyra84641;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 63657 64239 . + 0 ID=Phyra84641;Parent=Phyra84641;rank=1 scaffold_119 . exon 63657 64239 . + . ID=Phyra84641.1;Parent=Phyra84641;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_119 . CDS 64570 64742 . + 0 ID=Phyra84641;Parent=Phyra84641;rank=2 scaffold_119 . exon 64570 64742 . + . ID=Phyra84641.2;Parent=Phyra84641;constitutive=1;ensembl_phase=1;rank=2 scaffold_119 . CDS 64857 65030 . + 0 ID=Phyra84641;Parent=Phyra84641;rank=3 scaffold_119 . exon 64857 65030 . + . ID=Phyra84641.3;Parent=Phyra84641;constitutive=1;rank=3 scaffold_119 . CDS 65472 65574 . + 0 ID=Phyra84641;Parent=Phyra84641;rank=4 scaffold_119 . exon 65472 65574 . + . ID=Phyra84641.4;Parent=Phyra84641;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_119 . CDS 65820 66386 . + 0 ID=Phyra84641;Parent=Phyra84641;rank=5 scaffold_119 . exon 65820 66386 . + . ID=Phyra84641.5;Parent=Phyra84641;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_119 . CDS 66822 67424 . + 0 ID=Phyra84641;Parent=Phyra84641;rank=6 scaffold_119 . exon 66822 67424 . + . ID=Phyra84641.6;Parent=Phyra84641;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_119 . CDS 67755 67927 . + 0 ID=Phyra84641;Parent=Phyra84641;rank=7 scaffold_119 . exon 67755 67927 . + . ID=Phyra84641.7;Parent=Phyra84641;constitutive=1;ensembl_phase=1;rank=7 scaffold_119 . CDS 68042 68215 . + 0 ID=Phyra84641;Parent=Phyra84641;rank=8 scaffold_119 . exon 68042 68215 . + . ID=Phyra84641.8;Parent=Phyra84641;constitutive=1;rank=8 scaffold_119 . CDS 68657 68759 . + 0 ID=Phyra84641;Parent=Phyra84641;rank=9 scaffold_119 . exon 68657 68759 . + . ID=Phyra84641.9;Parent=Phyra84641;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_119 . CDS 68943 70018 . + 0 ID=Phyra84641;Parent=Phyra84641;rank=10 scaffold_119 . exon 68943 70018 . + . ID=Phyra84641.10;Parent=Phyra84641;constitutive=1;ensembl_phase=1;rank=10 scaffold_119 . repeat_region 71325 71354 . ? . description=trf scaffold_119 . repeat_region 74040 74065 . ? . description=trf scaffold_119 . repeat_region 78469 78544 . ? . description=trf scaffold_119 . biological_region 79174 79178 0.999 - . logic_name=eponine scaffold_119 ensembl protein_coding_gene 72172 73278 . - . ID=Phyra72257;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_119000001;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 72172 73278 . - . ID=Phyra72257;Parent=Phyra72257;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 72172 73278 . - 0 ID=Phyra72257;Parent=Phyra72257;rank=1 scaffold_119 . exon 72172 73278 . - . ID=Phyra72257.1;Parent=Phyra72257;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 70080 71435 . - . ID=Phyra84642;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_119000008;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 70080 71435 . - . ID=Phyra84642;Parent=Phyra84642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 70080 71435 . - 0 ID=Phyra84642;Parent=Phyra84642;rank=1 scaffold_119 . exon 70080 71435 . - . ID=Phyra84642.1;Parent=Phyra84642;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 75734 77265 . - . ID=Phyra84644;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_119000010;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 75734 77265 . - . ID=Phyra84644;Parent=Phyra84644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 75734 75787 . - 0 ID=Phyra84644;Parent=Phyra84644;rank=4 scaffold_119 . exon 75734 75787 . - . ID=Phyra84644.4;Parent=Phyra84644;constitutive=1;rank=4 scaffold_119 . CDS 76212 76852 . - 0 ID=Phyra84644;Parent=Phyra84644;rank=3 scaffold_119 . exon 76212 76852 . - . ID=Phyra84644.3;Parent=Phyra84644;constitutive=1;ensembl_phase=1;rank=3 scaffold_119 . CDS 76962 77118 . - 0 ID=Phyra84644;Parent=Phyra84644;rank=2 scaffold_119 . exon 76962 77118 . - . ID=Phyra84644.2;Parent=Phyra84644;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_119 . CDS 77191 77265 . - 0 ID=Phyra84644;Parent=Phyra84644;rank=1 scaffold_119 . exon 77191 77265 . - . ID=Phyra84644.1;Parent=Phyra84644;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 78817 79542 . - . ID=Phyra84645;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_119000011;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 78817 79542 . - . ID=Phyra84645;Parent=Phyra84645;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 78817 79542 . - 0 ID=Phyra84645;Parent=Phyra84645;rank=1 scaffold_119 . exon 78817 79542 . - . ID=Phyra84645.1;Parent=Phyra84645;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 79953 83427 . - . ID=Phyra84646;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_119000012;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 79953 83427 . - . ID=Phyra84646;Parent=Phyra84646;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 79953 80454 . - 0 ID=Phyra84646;Parent=Phyra84646;rank=3 scaffold_119 . exon 79953 80454 . - . ID=Phyra84646.3;Parent=Phyra84646;constitutive=1;ensembl_phase=2;rank=3 scaffold_119 . CDS 80558 80665 . - 0 ID=Phyra84646;Parent=Phyra84646;rank=2 scaffold_119 . exon 80558 80665 . - . ID=Phyra84646.2;Parent=Phyra84646;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_119 . CDS 80912 83427 . - 0 ID=Phyra84646;Parent=Phyra84646;rank=1 scaffold_119 . exon 80912 83427 . - . ID=Phyra84646.1;Parent=Phyra84646;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_119 ensembl protein_coding_gene 84338 86614 . - . ID=Phyra84647;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_119000013;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 84338 86614 . - . ID=Phyra84647;Parent=Phyra84647;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 84338 86614 . - 0 ID=Phyra84647;Parent=Phyra84647;rank=1 scaffold_119 . exon 84338 86614 . - . ID=Phyra84647.1;Parent=Phyra84647;constitutive=1;rank=1 scaffold_119 . biological_region 91255 91257 0.999 + . logic_name=eponine scaffold_119 . biological_region 91318 91320 0.999 + . logic_name=eponine scaffold_119 . biological_region 92015 92015 0.999 + . logic_name=eponine scaffold_119 . biological_region 92024 92024 0.999 - . logic_name=eponine scaffold_119 . biological_region 92227 92227 0.999 - . logic_name=eponine scaffold_119 . biological_region 92280 92282 0.999 - . logic_name=eponine scaffold_119 . biological_region 93116 93119 0.999 - . logic_name=eponine scaffold_119 . biological_region 94055 94057 0.999 - . logic_name=eponine scaffold_119 . repeat_region 96060 96087 . ? . description=trf scaffold_119 . repeat_region 96060 96087 . ? . description=trf scaffold_119 . repeat_region 96938 96987 . ? . description=dust scaffold_119 . biological_region 98491 98495 0.999 - . logic_name=eponine scaffold_119 ensembl protein_coding_gene 96989 98299 . - . ID=Phyra40367;biotype=protein_coding;external_name=gwEuk.119.13.1;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 96989 98299 . - . ID=Phyra40367;Parent=Phyra40367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 96989 98299 . - 0 ID=Phyra40367;Parent=Phyra40367;rank=1 scaffold_119 . exon 96989 98299 . - . ID=Phyra40367.1;Parent=Phyra40367;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 90651 91580 . - . ID=Phyra84648;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_119000014;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 90651 91580 . - . ID=Phyra84648;Parent=Phyra84648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 90651 91580 . - 0 ID=Phyra84648;Parent=Phyra84648;rank=1 scaffold_119 . exon 90651 91580 . - . ID=Phyra84648.1;Parent=Phyra84648;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 91728 92405 . - . ID=Phyra84649;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_119000015;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 91728 92405 . - . ID=Phyra84649;Parent=Phyra84649;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 91728 92405 . - 0 ID=Phyra84649;Parent=Phyra84649;rank=1 scaffold_119 . exon 91728 92405 . - . ID=Phyra84649.1;Parent=Phyra84649;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 93191 95224 . + . ID=Phyra84650;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_119000016;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 93191 95224 . + . ID=Phyra84650;Parent=Phyra84650;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 93191 95224 . + 0 ID=Phyra84650;Parent=Phyra84650;rank=1 scaffold_119 . exon 93191 95224 . + . ID=Phyra84650.1;Parent=Phyra84650;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 101113 129132 . - . ID=Phyra84652;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_119000018;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 101113 129132 . - . ID=Phyra84652;Parent=Phyra84652;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 101113 101512 . - 0 ID=Phyra84652;Parent=Phyra84652;rank=3 scaffold_119 . exon 101113 101512 . - . ID=Phyra84652.3;Parent=Phyra84652;constitutive=1;ensembl_phase=2;rank=3 scaffold_119 . CDS 127559 127586 . - 0 ID=Phyra84652;Parent=Phyra84652;rank=2 scaffold_119 . CDS 127623 129132 . - 0 ID=Phyra84652;Parent=Phyra84652;rank=1 scaffold_119 . repeat_region 101520 127453 . ? . description=dust scaffold_119 . biological_region 127796 127801 0.999 - . logic_name=eponine scaffold_119 . repeat_region 128216 128323 . ? . description=trf scaffold_119 . repeat_region 128255 128354 . ? . description=trf scaffold_119 . biological_region 128861 128865 0.999 + . logic_name=eponine scaffold_119 . repeat_region 128874 128912 . ? . description=trf scaffold_119 . biological_region 128905 128914 0.999 + . logic_name=eponine scaffold_119 . biological_region 128999 129002 0.999 - . logic_name=eponine scaffold_119 . biological_region 129108 129112 0.999 - . logic_name=eponine scaffold_119 ensembl protein_coding_gene 101113 129132 . - . ID=Phyra84652;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_119000018;logic_name=jgi_phyra1 scaffold_119 ensembl transcript 101113 129132 . - . ID=Phyra84652;Parent=Phyra84652;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_119 . CDS 101113 101512 . - 0 ID=Phyra84652;Parent=Phyra84652;rank=3 scaffold_119 . CDS 127559 127586 . - 0 ID=Phyra84652;Parent=Phyra84652;rank=2 scaffold_119 . exon 127559 127586 . - . ID=Phyra84652.2;Parent=Phyra84652;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_119 . CDS 127623 129132 . - 0 ID=Phyra84652;Parent=Phyra84652;rank=1 scaffold_119 . exon 127623 129132 . - . ID=Phyra84652.1;Parent=Phyra84652;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_118 1 129900 scaffold_118 . repeat_region 127 540 . + . description=GypsyPi-1c_I-int scaffold_118 . biological_region 166 169 0.999 - . logic_name=eponine scaffold_118 . biological_region 671 672 0.999 - . logic_name=eponine scaffold_118 . biological_region 708 711 0.999 - . logic_name=eponine scaffold_118 . repeat_region 830 1547 . + . description=GypsyPi-1c_I-int scaffold_118 . biological_region 930 932 0.999 - . logic_name=eponine scaffold_118 . biological_region 1060 1061 0.999 + . logic_name=eponine scaffold_118 . biological_region 1496 1504 0.999 - . logic_name=eponine scaffold_118 . biological_region 1810 1811 0.999 - . logic_name=eponine scaffold_118 . biological_region 1845 1849 0.999 - . logic_name=eponine scaffold_118 . biological_region 1863 1869 0.999 + . logic_name=eponine scaffold_118 . biological_region 2102 2104 0.999 - . logic_name=eponine scaffold_118 . biological_region 2259 2264 0.999 + . logic_name=eponine scaffold_118 . biological_region 2313 2320 0.999 + . logic_name=eponine scaffold_118 . repeat_region 2319 2343 . ? . description=trf scaffold_118 . biological_region 2364 2371 0.999 - . logic_name=eponine scaffold_118 . biological_region 2463 2467 0.999 - . logic_name=eponine scaffold_118 . repeat_region 2734 4085 . ? . description=dust scaffold_118 . biological_region 4514 4518 0.999 + . logic_name=eponine scaffold_118 . biological_region 4608 4612 0.999 + . logic_name=eponine scaffold_118 . repeat_region 5159 5208 . ? . description=dust scaffold_118 ensembl protein_coding_gene 35 1486 . + . ID=Phyra84594;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000001;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 35 1486 . + . ID=Phyra84594;Parent=Phyra84594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 35 1486 . + 0 ID=Phyra84594;Parent=Phyra84594;rank=1 scaffold_118 . exon 35 1486 . + . ID=Phyra84594.1;Parent=Phyra84594;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 9265 9980 . + . ID=Phyra84595;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000002;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 9265 9980 . + . ID=Phyra84595;Parent=Phyra84595;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 9265 9412 . + 0 ID=Phyra84595;Parent=Phyra84595;rank=1 scaffold_118 . exon 9265 9412 . + . ID=Phyra84595.1;Parent=Phyra84595;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_118 . CDS 9508 9608 . + 0 ID=Phyra84595;Parent=Phyra84595;rank=2 scaffold_118 . exon 9508 9608 . + . ID=Phyra84595.2;Parent=Phyra84595;constitutive=1;ensembl_phase=1;rank=2 scaffold_118 . CDS 9695 9980 . + 0 ID=Phyra84595;Parent=Phyra84595;rank=3 scaffold_118 . exon 9695 9980 . + . ID=Phyra84595.3;Parent=Phyra84595;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_118 ensembl protein_coding_gene 10100 10624 . + . ID=Phyra72253;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_118000001;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 10100 10624 . + . ID=Phyra72253;Parent=Phyra72253;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 10100 10624 . + 0 ID=Phyra72253;Parent=Phyra72253;rank=1 scaffold_118 . exon 10100 10624 . + . ID=Phyra72253.1;Parent=Phyra72253;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 10771 14053 . + . ID=Phyra84597;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000004;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 10771 14053 . + . ID=Phyra84597;Parent=Phyra84597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 10771 11196 . + 0 ID=Phyra84597;Parent=Phyra84597;rank=1 scaffold_118 . exon 10771 11196 . + . ID=Phyra84597.1;Parent=Phyra84597;constitutive=1;rank=1 scaffold_118 . CDS 11419 12123 . + 0 ID=Phyra84597;Parent=Phyra84597;rank=2 scaffold_118 . exon 11419 12123 . + . ID=Phyra84597.2;Parent=Phyra84597;constitutive=1;rank=2 scaffold_118 . CDS 12205 12777 . + 0 ID=Phyra84597;Parent=Phyra84597;rank=3 scaffold_118 . exon 12205 12777 . + . ID=Phyra84597.3;Parent=Phyra84597;constitutive=1;rank=3 scaffold_118 . CDS 13234 13782 . + 0 ID=Phyra84597;Parent=Phyra84597;rank=4 scaffold_118 . exon 13234 13782 . + . ID=Phyra84597.4;Parent=Phyra84597;constitutive=1;rank=4 scaffold_118 . CDS 13850 14053 . + 0 ID=Phyra84597;Parent=Phyra84597;rank=5 scaffold_118 . exon 13850 14053 . + . ID=Phyra84597.5;Parent=Phyra84597;constitutive=1;rank=5 scaffold_118 ensembl protein_coding_gene 17163 18731 . + . ID=Phyra84599;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000006;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 17163 18731 . + . ID=Phyra84599;Parent=Phyra84599;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 17163 17885 . + 0 ID=Phyra84599;Parent=Phyra84599;rank=1 scaffold_118 . exon 17163 17885 . + . ID=Phyra84599.1;Parent=Phyra84599;constitutive=1;rank=1 scaffold_118 . CDS 17956 18009 . + 0 ID=Phyra84599;Parent=Phyra84599;rank=2 scaffold_118 . exon 17956 18009 . + . ID=Phyra84599.2;Parent=Phyra84599;constitutive=1;rank=2 scaffold_118 . CDS 18078 18165 . + 0 ID=Phyra84599;Parent=Phyra84599;rank=3 scaffold_118 . exon 18078 18165 . + . ID=Phyra84599.3;Parent=Phyra84599;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_118 . CDS 18232 18605 . + 0 ID=Phyra84599;Parent=Phyra84599;rank=4 scaffold_118 . exon 18232 18605 . + . ID=Phyra84599.4;Parent=Phyra84599;constitutive=1;ensembl_phase=1;rank=4 scaffold_118 . CDS 18672 18731 . + 0 ID=Phyra84599;Parent=Phyra84599;rank=5 scaffold_118 . exon 18672 18731 . + . ID=Phyra84599.5;Parent=Phyra84599;constitutive=1;rank=5 scaffold_118 ensembl protein_coding_gene 19231 19941 . + . ID=Phyra84600;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000007;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 19231 19941 . + . ID=Phyra84600;Parent=Phyra84600;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 19231 19941 . + 0 ID=Phyra84600;Parent=Phyra84600;rank=1 scaffold_118 . exon 19231 19941 . + . ID=Phyra84600.1;Parent=Phyra84600;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 14247 16006 . + . ID=Phyra96890;biotype=protein_coding;external_name=C_scaffold_118000002;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 14247 16006 . + . ID=Phyra96890;Parent=Phyra96890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 14247 14295 . + 0 ID=Phyra96890;Parent=Phyra96890;rank=1 scaffold_118 . exon 14247 14295 . + . ID=Phyra96890.1;Parent=Phyra96890;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_118 . CDS 14370 14672 . + 0 ID=Phyra96890;Parent=Phyra96890;rank=2 scaffold_118 . exon 14370 14672 . + . ID=Phyra96890.2;Parent=Phyra96890;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_118 . CDS 14734 14959 . + 0 ID=Phyra96890;Parent=Phyra96890;rank=3 scaffold_118 . exon 14734 14959 . + . ID=Phyra96890.3;Parent=Phyra96890;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_118 . CDS 15002 16006 . + 0 ID=Phyra96890;Parent=Phyra96890;rank=4 scaffold_118 . exon 15002 16006 . + . ID=Phyra96890.4;Parent=Phyra96890;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_118 . biological_region 22228 22230 0.999 + . logic_name=eponine scaffold_118 . biological_region 22374 22376 0.999 - . logic_name=eponine scaffold_118 . biological_region 24449 24449 0.999 + . logic_name=eponine scaffold_118 . biological_region 25940 25944 0.999 - . logic_name=eponine scaffold_118 . biological_region 26724 26736 0.999 + . logic_name=eponine scaffold_118 . biological_region 26731 26733 0.999 - . logic_name=eponine scaffold_118 . biological_region 26784 26785 0.999 + . logic_name=eponine scaffold_118 . biological_region 26802 26804 0.999 - . logic_name=eponine scaffold_118 . biological_region 26910 26916 0.999 + . logic_name=eponine scaffold_118 . repeat_region 28207 28261 . ? . description=trf scaffold_118 . biological_region 28263 28264 0.999 - . logic_name=eponine scaffold_118 ensembl protein_coding_gene 28046 29251 . + . ID=Phyra84603;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000010;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 28046 29251 . + . ID=Phyra84603;Parent=Phyra84603;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 28046 29251 . + 0 ID=Phyra84603;Parent=Phyra84603;rank=1 scaffold_118 . exon 28046 29251 . + . ID=Phyra84603.1;Parent=Phyra84603;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 20110 26983 . - . ID=Phyra96893;biotype=protein_coding;external_name=C_scaffold_118000005;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 20110 26983 . - . ID=Phyra96893;Parent=Phyra96893;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 20110 20139 . - 0 ID=Phyra96893;Parent=Phyra96893;rank=13 scaffold_118 . exon 20110 20139 . - . ID=Phyra96893.13;Parent=Phyra96893;constitutive=1;rank=13 scaffold_118 . CDS 20174 20666 . - 0 ID=Phyra96893;Parent=Phyra96893;rank=12 scaffold_118 . exon 20174 20666 . - . ID=Phyra96893.12;Parent=Phyra96893;constitutive=1;ensembl_phase=2;rank=12 scaffold_118 . CDS 20739 20758 . - 0 ID=Phyra96893;Parent=Phyra96893;rank=11 scaffold_118 . exon 20739 20758 . - . ID=Phyra96893.11;Parent=Phyra96893;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_118 . CDS 20834 21259 . - 0 ID=Phyra96893;Parent=Phyra96893;rank=10 scaffold_118 . exon 20834 21259 . - . ID=Phyra96893.10;Parent=Phyra96893;constitutive=1;rank=10 scaffold_118 . CDS 21370 21477 . - 0 ID=Phyra96893;Parent=Phyra96893;rank=9 scaffold_118 . exon 21370 21477 . - . ID=Phyra96893.9;Parent=Phyra96893;constitutive=1;rank=9 scaffold_118 . CDS 21577 21642 . - 0 ID=Phyra96893;Parent=Phyra96893;rank=8 scaffold_118 . exon 21577 21642 . - . ID=Phyra96893.8;Parent=Phyra96893;constitutive=1;rank=8 scaffold_118 . CDS 21713 21781 . - 0 ID=Phyra96893;Parent=Phyra96893;rank=7 scaffold_118 . exon 21713 21781 . - . ID=Phyra96893.7;Parent=Phyra96893;constitutive=1;rank=7 scaffold_118 . CDS 21841 21978 . - 0 ID=Phyra96893;Parent=Phyra96893;rank=6 scaffold_118 . exon 21841 21978 . - . ID=Phyra96893.6;Parent=Phyra96893;constitutive=1;rank=6 scaffold_118 . CDS 22090 22429 . - 0 ID=Phyra96893;Parent=Phyra96893;rank=5 scaffold_118 . exon 22090 22429 . - . ID=Phyra96893.5;Parent=Phyra96893;constitutive=1;ensembl_phase=2;rank=5 scaffold_118 . CDS 22545 22675 . - 0 ID=Phyra96893;Parent=Phyra96893;rank=4 scaffold_118 . exon 22545 22675 . - . ID=Phyra96893.4;Parent=Phyra96893;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_118 . CDS 22736 25384 . - 0 ID=Phyra96893;Parent=Phyra96893;rank=3 scaffold_118 . exon 22736 25384 . - . ID=Phyra96893.3;Parent=Phyra96893;constitutive=1;rank=3 scaffold_118 . CDS 25418 26770 . - 0 ID=Phyra96893;Parent=Phyra96893;rank=2 scaffold_118 . exon 25418 26770 . - . ID=Phyra96893.2;Parent=Phyra96893;constitutive=1;rank=2 scaffold_118 . CDS 26807 26983 . - 0 ID=Phyra96893;Parent=Phyra96893;rank=1 scaffold_118 . exon 26807 26983 . - . ID=Phyra96893.1;Parent=Phyra96893;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 29638 32910 . - . ID=Phyra96897;biotype=protein_coding;external_name=C_scaffold_118000009;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 29638 32910 . - . ID=Phyra96897;Parent=Phyra96897;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 29638 29687 . - 0 ID=Phyra96897;Parent=Phyra96897;rank=9 scaffold_118 . exon 29638 29687 . - . ID=Phyra96897.9;Parent=Phyra96897;constitutive=1;ensembl_phase=1;rank=9 scaffold_118 . CDS 29798 30053 . - 0 ID=Phyra96897;Parent=Phyra96897;rank=8 scaffold_118 . exon 29798 30053 . - . ID=Phyra96897.8;Parent=Phyra96897;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_118 . CDS 30111 30859 . - 0 ID=Phyra96897;Parent=Phyra96897;rank=7 scaffold_118 . CDS 30953 31081 . - 0 ID=Phyra96897;Parent=Phyra96897;rank=6 scaffold_118 . CDS 31172 31774 . - 0 ID=Phyra96897;Parent=Phyra96897;rank=5 scaffold_118 . CDS 31851 31860 . - 0 ID=Phyra96897;Parent=Phyra96897;rank=4 scaffold_118 . CDS 31945 32221 . - 0 ID=Phyra96897;Parent=Phyra96897;rank=3 scaffold_118 . CDS 32273 32439 . - 0 ID=Phyra96897;Parent=Phyra96897;rank=2 scaffold_118 . CDS 32470 32910 . - 0 ID=Phyra96897;Parent=Phyra96897;rank=1 scaffold_118 ensembl protein_coding_gene 35716 36112 . - . ID=Phyra84605;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000012;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 35716 36112 . - . ID=Phyra84605;Parent=Phyra84605;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 35716 35869 . - 0 ID=Phyra84605;Parent=Phyra84605;rank=2 scaffold_118 . exon 35716 35869 . - . ID=Phyra84605.2;Parent=Phyra84605;constitutive=1;ensembl_phase=2;rank=2 scaffold_118 . CDS 35922 36112 . - 0 ID=Phyra84605;Parent=Phyra84605;rank=1 scaffold_118 . exon 35922 36112 . - . ID=Phyra84605.1;Parent=Phyra84605;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_118 ensembl protein_coding_gene 36281 37150 . + . ID=Phyra84606;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000013;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 36281 37150 . + . ID=Phyra84606;Parent=Phyra84606;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 36281 37150 . + 0 ID=Phyra84606;Parent=Phyra84606;rank=1 scaffold_118 . exon 36281 37150 . + . ID=Phyra84606.1;Parent=Phyra84606;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 37434 38826 . - . ID=Phyra84607;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000014;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 37434 38826 . - . ID=Phyra84607;Parent=Phyra84607;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 37434 37493 . - 0 ID=Phyra84607;Parent=Phyra84607;rank=6 scaffold_118 . exon 37434 37493 . - . ID=Phyra84607.6;Parent=Phyra84607;constitutive=1;rank=6 scaffold_118 . CDS 37522 37632 . - 0 ID=Phyra84607;Parent=Phyra84607;rank=5 scaffold_118 . exon 37522 37632 . - . ID=Phyra84607.5;Parent=Phyra84607;constitutive=1;rank=5 scaffold_118 . CDS 37713 37830 . - 0 ID=Phyra84607;Parent=Phyra84607;rank=4 scaffold_118 . exon 37713 37830 . - . ID=Phyra84607.4;Parent=Phyra84607;constitutive=1;ensembl_phase=2;rank=4 scaffold_118 . CDS 37905 38065 . - 0 ID=Phyra84607;Parent=Phyra84607;rank=3 scaffold_118 . exon 37905 38065 . - . ID=Phyra84607.3;Parent=Phyra84607;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_118 . CDS 38145 38352 . - 0 ID=Phyra84607;Parent=Phyra84607;rank=2 scaffold_118 . exon 38145 38352 . - . ID=Phyra84607.2;Parent=Phyra84607;constitutive=1;ensembl_phase=2;rank=2 scaffold_118 . CDS 38426 38826 . - 0 ID=Phyra84607;Parent=Phyra84607;rank=1 scaffold_118 . exon 38426 38826 . - . ID=Phyra84607.1;Parent=Phyra84607;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_118 ensembl protein_coding_gene 39286 41233 . + . ID=Phyra84608;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000015;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 39286 41233 . + . ID=Phyra84608;Parent=Phyra84608;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 39286 40422 . + 0 ID=Phyra84608;Parent=Phyra84608;rank=1 scaffold_118 . exon 39286 40422 . + . ID=Phyra84608.1;Parent=Phyra84608;constitutive=1;rank=1 scaffold_118 . CDS 40502 40664 . + 0 ID=Phyra84608;Parent=Phyra84608;rank=2 scaffold_118 . CDS 40746 41233 . + 0 ID=Phyra84608;Parent=Phyra84608;rank=3 scaffold_118 . exon 30111 30859 . - . ID=Phyra96897.7;Parent=Phyra96897;constitutive=1;ensembl_phase=1;rank=7 scaffold_118 . exon 30953 31081 . - . ID=Phyra96897.6;Parent=Phyra96897;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_118 . exon 31172 31774 . - . ID=Phyra96897.5;Parent=Phyra96897;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_118 . exon 31851 31860 . - . ID=Phyra96897.4;Parent=Phyra96897;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_118 . exon 31945 32221 . - . ID=Phyra96897.3;Parent=Phyra96897;constitutive=1;ensembl_phase=2;rank=3 scaffold_118 . exon 32273 32439 . - . ID=Phyra96897.2;Parent=Phyra96897;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_118 . exon 32470 32910 . - . ID=Phyra96897.1;Parent=Phyra96897;constitutive=1;rank=1 scaffold_118 . repeat_region 41956 42001 . ? . description=dust scaffold_118 . biological_region 42204 42208 0.999 + . logic_name=eponine scaffold_118 . biological_region 43096 43102 0.999 + . logic_name=eponine scaffold_118 . biological_region 43116 43121 0.999 - . logic_name=eponine scaffold_118 . biological_region 48934 48937 0.999 + . logic_name=eponine scaffold_118 . biological_region 49384 49386 0.999 - . logic_name=eponine scaffold_118 . exon 40502 40664 . + . ID=Phyra84608.2;Parent=Phyra84608;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_118 . exon 40746 41233 . + . ID=Phyra84608.3;Parent=Phyra84608;constitutive=1;ensembl_phase=1;rank=3 scaffold_118 ensembl protein_coding_gene 41931 42724 . + . ID=Phyra84609;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000016;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 41931 42724 . + . ID=Phyra84609;Parent=Phyra84609;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 41931 42327 . + 0 ID=Phyra84609;Parent=Phyra84609;rank=1 scaffold_118 . exon 41931 42327 . + . ID=Phyra84609.1;Parent=Phyra84609;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_118 . CDS 42407 42514 . + 0 ID=Phyra84609;Parent=Phyra84609;rank=2 scaffold_118 . exon 42407 42514 . + . ID=Phyra84609.2;Parent=Phyra84609;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_118 . CDS 42600 42724 . + 0 ID=Phyra84609;Parent=Phyra84609;rank=3 scaffold_118 . exon 42600 42724 . + . ID=Phyra84609.3;Parent=Phyra84609;constitutive=1;ensembl_phase=1;rank=3 scaffold_118 ensembl protein_coding_gene 42958 44614 . + . ID=Phyra84610;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000017;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 42958 44614 . + . ID=Phyra84610;Parent=Phyra84610;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 42958 43158 . + 0 ID=Phyra84610;Parent=Phyra84610;rank=1 scaffold_118 . exon 42958 43158 . + . ID=Phyra84610.1;Parent=Phyra84610;constitutive=1;rank=1 scaffold_118 . CDS 43255 43472 . + 0 ID=Phyra84610;Parent=Phyra84610;rank=2 scaffold_118 . exon 43255 43472 . + . ID=Phyra84610.2;Parent=Phyra84610;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_118 . CDS 43538 43757 . + 0 ID=Phyra84610;Parent=Phyra84610;rank=3 scaffold_118 . exon 43538 43757 . + . ID=Phyra84610.3;Parent=Phyra84610;constitutive=1;ensembl_phase=2;rank=3 scaffold_118 . CDS 43830 43934 . + 0 ID=Phyra84610;Parent=Phyra84610;rank=4 scaffold_118 . exon 43830 43934 . + . ID=Phyra84610.4;Parent=Phyra84610;constitutive=1;rank=4 scaffold_118 . CDS 44008 44374 . + 0 ID=Phyra84610;Parent=Phyra84610;rank=5 scaffold_118 . exon 44008 44374 . + . ID=Phyra84610.5;Parent=Phyra84610;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_118 . CDS 44457 44614 . + 0 ID=Phyra84610;Parent=Phyra84610;rank=6 scaffold_118 . exon 44457 44614 . + . ID=Phyra84610.6;Parent=Phyra84610;constitutive=1;ensembl_phase=1;rank=6 scaffold_118 ensembl protein_coding_gene 47326 49808 . + . ID=Phyra96900;biotype=protein_coding;external_name=C_scaffold_118000012;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 47326 49808 . + . ID=Phyra96900;Parent=Phyra96900;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 47326 47580 . + 0 ID=Phyra96900;Parent=Phyra96900;rank=1 scaffold_118 . exon 47326 47580 . + . ID=Phyra96900.1;Parent=Phyra96900;constitutive=1;rank=1 scaffold_118 . CDS 47646 47875 . + 0 ID=Phyra96900;Parent=Phyra96900;rank=2 scaffold_118 . exon 47646 47875 . + . ID=Phyra96900.2;Parent=Phyra96900;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_118 . CDS 47947 48651 . + 0 ID=Phyra96900;Parent=Phyra96900;rank=3 scaffold_118 . exon 47947 48651 . + . ID=Phyra96900.3;Parent=Phyra96900;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_118 . CDS 48708 48953 . + 0 ID=Phyra96900;Parent=Phyra96900;rank=4 scaffold_118 . exon 48708 48953 . + . ID=Phyra96900.4;Parent=Phyra96900;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_118 . CDS 49205 49590 . + 0 ID=Phyra96900;Parent=Phyra96900;rank=5 scaffold_118 . exon 49205 49590 . + . ID=Phyra96900.5;Parent=Phyra96900;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_118 . CDS 49666 49808 . + 0 ID=Phyra96900;Parent=Phyra96900;rank=6 scaffold_118 . exon 49666 49808 . + . ID=Phyra96900.6;Parent=Phyra96900;constitutive=1;ensembl_phase=1;rank=6 scaffold_118 . repeat_region 52382 52405 . ? . description=trf scaffold_118 ensembl protein_coding_gene 50106 50804 . - . ID=Phyra72254;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_118000002;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 50106 50804 . - . ID=Phyra72254;Parent=Phyra72254;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 50106 50804 . - 0 ID=Phyra72254;Parent=Phyra72254;rank=1 scaffold_118 . exon 50106 50804 . - . ID=Phyra72254.1;Parent=Phyra72254;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 51040 52704 . + . ID=Phyra84614;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000021;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 51040 52704 . + . ID=Phyra84614;Parent=Phyra84614;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 51040 52704 . + 0 ID=Phyra84614;Parent=Phyra84614;rank=1 scaffold_118 . exon 51040 52704 . + . ID=Phyra84614.1;Parent=Phyra84614;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 52822 54670 . - . ID=Phyra84615;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000022;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 52822 54670 . - . ID=Phyra84615;Parent=Phyra84615;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 52822 53434 . - 0 ID=Phyra84615;Parent=Phyra84615;rank=2 scaffold_118 . exon 52822 53434 . - . ID=Phyra84615.2;Parent=Phyra84615;constitutive=1;ensembl_phase=2;rank=2 scaffold_118 . CDS 53517 54670 . - 0 ID=Phyra84615;Parent=Phyra84615;rank=1 scaffold_118 . exon 53517 54670 . - . ID=Phyra84615.1;Parent=Phyra84615;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_118 . repeat_region 60769 60943 . + . description=(CTCA)n scaffold_118 . repeat_region 60770 60961 . ? . description=dust scaffold_118 . repeat_region 62759 64183 . ? . description=dust scaffold_118 . repeat_region 66151 66200 . ? . description=dust scaffold_118 . repeat_region 66790 66937 . + . description=(CTCA)n scaffold_118 . repeat_region 66799 66912 . ? . description=dust scaffold_118 . repeat_region 67032 67081 . ? . description=dust scaffold_118 . repeat_region 69311 69360 . ? . description=dust scaffold_118 ensembl tRNA_gene 61782 61854 . + . ID=EPrPRAG00000000191;biotype=tRNA;description=tRNA-Val for anticodon UAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_118 ensembl transcript 61782 61854 . + . ID=EPrPRAT00000000191;Parent=EPrPRAG00000000191;biotype=tRNA;logic_name=ncrna_eg scaffold_118 . exon 61782 61854 . + . ID=EPrPRAE00000000191;Parent=EPrPRAT00000000191;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_118 ensembl protein_coding_gene 64283 65595 . - . ID=Phyra84616;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000023;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 64283 65595 . - . ID=Phyra84616;Parent=Phyra84616;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 64283 64296 . - 0 ID=Phyra84616;Parent=Phyra84616;rank=2 scaffold_118 . exon 64283 64296 . - . ID=Phyra84616.2;Parent=Phyra84616;constitutive=1;ensembl_phase=1;rank=2 scaffold_118 . CDS 64353 65595 . - 0 ID=Phyra84616;Parent=Phyra84616;rank=1 scaffold_118 . exon 64353 65595 . - . ID=Phyra84616.1;Parent=Phyra84616;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_118 ensembl protein_coding_gene 67423 71150 . - . ID=Phyra84617;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000024;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 67423 71150 . - . ID=Phyra84617;Parent=Phyra84617;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 67423 68534 . - 0 ID=Phyra84617;Parent=Phyra84617;rank=4 scaffold_118 . exon 67423 68534 . - . ID=Phyra84617.4;Parent=Phyra84617;constitutive=1;ensembl_phase=1;rank=4 scaffold_118 . CDS 68624 69305 . - 0 ID=Phyra84617;Parent=Phyra84617;rank=3 scaffold_118 . exon 68624 69305 . - . ID=Phyra84617.3;Parent=Phyra84617;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_118 . CDS 69442 70013 . - 0 ID=Phyra84617;Parent=Phyra84617;rank=2 scaffold_118 . exon 69442 70013 . - . ID=Phyra84617.2;Parent=Phyra84617;constitutive=1;ensembl_phase=1;rank=2 scaffold_118 . CDS 70220 71150 . - 0 ID=Phyra84617;Parent=Phyra84617;rank=1 scaffold_118 . repeat_region 71616 71674 . ? . description=trf scaffold_118 . repeat_region 72820 73015 . ? . description=trf scaffold_118 . repeat_region 77530 77594 . ? . description=trf scaffold_118 ensembl tRNA_gene 73834 73906 . + . ID=EPrPRAG00000000014;biotype=tRNA;description=tRNA-Val for anticodon UAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_118 ensembl transcript 73834 73906 . + . ID=EPrPRAT00000000014;Parent=EPrPRAG00000000014;biotype=tRNA;logic_name=ncrna_eg scaffold_118 . exon 73834 73906 . + . ID=EPrPRAE00000000014;Parent=EPrPRAT00000000014;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_118 . exon 70220 71150 . - . ID=Phyra84617.1;Parent=Phyra84617;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_118 ensembl protein_coding_gene 75432 76479 . + . ID=Phyra84618;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000025;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 75432 76479 . + . ID=Phyra84618;Parent=Phyra84618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 75432 75499 . + 0 ID=Phyra84618;Parent=Phyra84618;rank=1 scaffold_118 . exon 75432 75499 . + . ID=Phyra84618.1;Parent=Phyra84618;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_118 . CDS 75866 76142 . + 0 ID=Phyra84618;Parent=Phyra84618;rank=2 scaffold_118 . exon 75866 76142 . + . ID=Phyra84618.2;Parent=Phyra84618;constitutive=1;ensembl_phase=2;rank=2 scaffold_118 . CDS 76234 76479 . + 0 ID=Phyra84618;Parent=Phyra84618;rank=3 scaffold_118 . exon 76234 76479 . + . ID=Phyra84618.3;Parent=Phyra84618;constitutive=1;rank=3 scaffold_118 . repeat_region 81275 81282 . ? . description=dust scaffold_118 . repeat_region 81341 81349 . ? . description=dust scaffold_118 . repeat_region 81583 81590 . ? . description=dust scaffold_118 . repeat_region 83470 83612 . - . description=GypsyPi-1c_LTR scaffold_118 . repeat_region 84870 84880 . ? . description=dust scaffold_118 . biological_region 86054 86058 0.999 + . logic_name=eponine scaffold_118 ensembl protein_coding_gene 85606 85923 . - . ID=Phyra84619;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000026;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 85606 85923 . - . ID=Phyra84619;Parent=Phyra84619;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 85606 85923 . - 0 ID=Phyra84619;Parent=Phyra84619;rank=1 scaffold_118 . exon 85606 85923 . - . ID=Phyra84619.1;Parent=Phyra84619;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 86036 89026 . + . ID=Phyra84620;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000027;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 86036 89026 . + . ID=Phyra84620;Parent=Phyra84620;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 86036 89026 . + 0 ID=Phyra84620;Parent=Phyra84620;rank=1 scaffold_118 . exon 86036 89026 . + . ID=Phyra84620.1;Parent=Phyra84620;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 89094 92906 . - . ID=Phyra84621;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000028;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 89094 92906 . - . ID=Phyra84621;Parent=Phyra84621;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 89094 90888 . - 0 ID=Phyra84621;Parent=Phyra84621;rank=4 scaffold_118 . exon 89094 90888 . - . ID=Phyra84621.4;Parent=Phyra84621;constitutive=1;ensembl_phase=2;rank=4 scaffold_118 . CDS 90960 90991 . - 0 ID=Phyra84621;Parent=Phyra84621;rank=3 scaffold_118 . CDS 91096 91705 . - 0 ID=Phyra84621;Parent=Phyra84621;rank=2 scaffold_118 . CDS 91777 92906 . - 0 ID=Phyra84621;Parent=Phyra84621;rank=1 scaffold_118 . repeat_region 93218 93331 . + . description=(CAG)n scaffold_118 . repeat_region 93227 93276 . ? . description=trf scaffold_118 . repeat_region 93279 93331 . ? . description=trf scaffold_118 . exon 90960 90991 . - . ID=Phyra84621.3;Parent=Phyra84621;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_118 . exon 91096 91705 . - . ID=Phyra84621.2;Parent=Phyra84621;constitutive=1;ensembl_phase=2;rank=2 scaffold_118 . exon 91777 92906 . - . ID=Phyra84621.1;Parent=Phyra84621;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_118 ensembl protein_coding_gene 93072 94072 . + . ID=Phyra84622;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000029;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 93072 94072 . + . ID=Phyra84622;Parent=Phyra84622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 93072 93777 . + 0 ID=Phyra84622;Parent=Phyra84622;rank=1 scaffold_118 . exon 93072 93777 . + . ID=Phyra84622.1;Parent=Phyra84622;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_118 . CDS 93855 94072 . + 0 ID=Phyra84622;Parent=Phyra84622;rank=2 scaffold_118 . exon 93855 94072 . + . ID=Phyra84622.2;Parent=Phyra84622;constitutive=1;ensembl_phase=1;rank=2 scaffold_118 ensembl protein_coding_gene 94195 96682 . - . ID=Phyra84623;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000030;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 94195 96682 . - . ID=Phyra84623;Parent=Phyra84623;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 94195 96027 . - 0 ID=Phyra84623;Parent=Phyra84623;rank=3 scaffold_118 . exon 94195 96027 . - . ID=Phyra84623.3;Parent=Phyra84623;constitutive=1;rank=3 scaffold_118 . CDS 96072 96255 . - 0 ID=Phyra84623;Parent=Phyra84623;rank=2 scaffold_118 . exon 96072 96255 . - . ID=Phyra84623.2;Parent=Phyra84623;constitutive=1;ensembl_phase=2;rank=2 scaffold_118 . CDS 96321 96682 . - 0 ID=Phyra84623;Parent=Phyra84623;rank=1 scaffold_118 . exon 96321 96682 . - . ID=Phyra84623.1;Parent=Phyra84623;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_118 ensembl protein_coding_gene 98925 101425 . - . ID=Phyra84624;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000031;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 98925 101425 . - . ID=Phyra84624;Parent=Phyra84624;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 98925 100929 . - 0 ID=Phyra84624;Parent=Phyra84624;rank=2 scaffold_118 . exon 98925 100929 . - . ID=Phyra84624.2;Parent=Phyra84624;constitutive=1;ensembl_phase=2;rank=2 scaffold_118 . CDS 100992 101425 . - 0 ID=Phyra84624;Parent=Phyra84624;rank=1 scaffold_118 . biological_region 102725 102726 0.999 - . logic_name=eponine scaffold_118 . biological_region 103174 103174 0.999 - . logic_name=eponine scaffold_118 . repeat_region 105672 105680 . ? . description=dust scaffold_118 . repeat_region 106970 106977 . ? . description=dust scaffold_118 . biological_region 109145 109148 0.999 + . logic_name=eponine scaffold_118 ensembl protein_coding_gene 102895 104647 . + . ID=Phyra40336;biotype=protein_coding;external_name=gwEuk.118.33.1;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 102895 104647 . + . ID=Phyra40336;Parent=Phyra40336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 102895 103865 . + 0 ID=Phyra40336;Parent=Phyra40336;rank=1 scaffold_118 . exon 102895 103865 . + . ID=Phyra40336.1;Parent=Phyra40336;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_118 . CDS 103939 104647 . + 0 ID=Phyra40336;Parent=Phyra40336;rank=2 scaffold_118 . exon 103939 104647 . + . ID=Phyra40336.2;Parent=Phyra40336;constitutive=1;ensembl_phase=2;rank=2 scaffold_118 . exon 100992 101425 . - . ID=Phyra84624.1;Parent=Phyra84624;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_118 ensembl protein_coding_gene 105082 105489 . + . ID=Phyra84626;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000033;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 105082 105489 . + . ID=Phyra84626;Parent=Phyra84626;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 105082 105489 . + 0 ID=Phyra84626;Parent=Phyra84626;rank=1 scaffold_118 . exon 105082 105489 . + . ID=Phyra84626.1;Parent=Phyra84626;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 107383 107826 . + . ID=Phyra84627;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000034;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 107383 107826 . + . ID=Phyra84627;Parent=Phyra84627;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 107383 107826 . + 0 ID=Phyra84627;Parent=Phyra84627;rank=1 scaffold_118 . exon 107383 107826 . + . ID=Phyra84627.1;Parent=Phyra84627;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 108865 110712 . + . ID=Phyra84628;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000035;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 108865 110712 . + . ID=Phyra84628;Parent=Phyra84628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 108865 110012 . + 0 ID=Phyra84628;Parent=Phyra84628;rank=1 scaffold_118 . exon 108865 110012 . + . ID=Phyra84628.1;Parent=Phyra84628;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_118 . CDS 110136 110712 . + 0 ID=Phyra84628;Parent=Phyra84628;rank=2 scaffold_118 . repeat_region 113985 114480 . ? . description=trf scaffold_118 . repeat_region 115939 115964 . ? . description=trf scaffold_118 . exon 110136 110712 . + . ID=Phyra84628.2;Parent=Phyra84628;constitutive=1;ensembl_phase=2;rank=2 scaffold_118 ensembl protein_coding_gene 111039 112466 . - . ID=Phyra84629;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000036;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 111039 112466 . - . ID=Phyra84629;Parent=Phyra84629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 111039 111059 . - 0 ID=Phyra84629;Parent=Phyra84629;rank=3 scaffold_118 . exon 111039 111059 . - . ID=Phyra84629.3;Parent=Phyra84629;constitutive=1;rank=3 scaffold_118 . CDS 111104 112343 . - 0 ID=Phyra84629;Parent=Phyra84629;rank=2 scaffold_118 . exon 111104 112343 . - . ID=Phyra84629.2;Parent=Phyra84629;constitutive=1;ensembl_phase=2;rank=2 scaffold_118 . CDS 112417 112466 . - 0 ID=Phyra84629;Parent=Phyra84629;rank=1 scaffold_118 . exon 112417 112466 . - . ID=Phyra84629.1;Parent=Phyra84629;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_118 ensembl protein_coding_gene 113609 114598 . + . ID=Phyra84630;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000037;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 113609 114598 . + . ID=Phyra84630;Parent=Phyra84630;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 113609 114598 . + 0 ID=Phyra84630;Parent=Phyra84630;rank=1 scaffold_118 . exon 113609 114598 . + . ID=Phyra84630.1;Parent=Phyra84630;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 114894 116802 . + . ID=Phyra84631;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000038;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 114894 116802 . + . ID=Phyra84631;Parent=Phyra84631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 114894 114960 . + 0 ID=Phyra84631;Parent=Phyra84631;rank=1 scaffold_118 . exon 114894 114960 . + . ID=Phyra84631.1;Parent=Phyra84631;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_118 . CDS 115031 115074 . + 0 ID=Phyra84631;Parent=Phyra84631;rank=2 scaffold_118 . exon 115031 115074 . + . ID=Phyra84631.2;Parent=Phyra84631;constitutive=1;ensembl_phase=1;rank=2 scaffold_118 . CDS 115144 115754 . + 0 ID=Phyra84631;Parent=Phyra84631;rank=3 scaffold_118 . exon 115144 115754 . + . ID=Phyra84631.3;Parent=Phyra84631;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_118 . CDS 115839 115977 . + 0 ID=Phyra84631;Parent=Phyra84631;rank=4 scaffold_118 . exon 115839 115977 . + . ID=Phyra84631.4;Parent=Phyra84631;constitutive=1;ensembl_phase=2;rank=4 scaffold_118 . CDS 116101 116237 . + 0 ID=Phyra84631;Parent=Phyra84631;rank=5 scaffold_118 . exon 116101 116237 . + . ID=Phyra84631.5;Parent=Phyra84631;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_118 . CDS 116343 116802 . + 0 ID=Phyra84631;Parent=Phyra84631;rank=6 scaffold_118 . exon 116343 116802 . + . ID=Phyra84631.6;Parent=Phyra84631;constitutive=1;ensembl_phase=2;rank=6 scaffold_118 ensembl protein_coding_gene 118455 124133 . + . ID=Phyra84632;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000039;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 118455 124133 . + . ID=Phyra84632;Parent=Phyra84632;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 118455 118484 . + 0 ID=Phyra84632;Parent=Phyra84632;rank=1 scaffold_118 . exon 118455 118484 . + . ID=Phyra84632.1;Parent=Phyra84632;constitutive=1;rank=1 scaffold_118 . CDS 118572 118612 . + 0 ID=Phyra84632;Parent=Phyra84632;rank=2 scaffold_118 . exon 118572 118612 . + . ID=Phyra84632.2;Parent=Phyra84632;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_118 . CDS 118687 118827 . + 0 ID=Phyra84632;Parent=Phyra84632;rank=3 scaffold_118 . exon 118687 118827 . + . ID=Phyra84632.3;Parent=Phyra84632;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_118 . CDS 118896 119566 . + 0 ID=Phyra84632;Parent=Phyra84632;rank=4 scaffold_118 . exon 118896 119566 . + . ID=Phyra84632.4;Parent=Phyra84632;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_118 . CDS 119645 119850 . + 0 ID=Phyra84632;Parent=Phyra84632;rank=5 scaffold_118 . exon 119645 119850 . + . ID=Phyra84632.5;Parent=Phyra84632;constitutive=1;ensembl_phase=1;rank=5 scaffold_118 . CDS 120251 120329 . + 0 ID=Phyra84632;Parent=Phyra84632;rank=6 scaffold_118 . CDS 120413 120706 . + 0 ID=Phyra84632;Parent=Phyra84632;rank=7 scaffold_118 . CDS 120772 120903 . + 0 ID=Phyra84632;Parent=Phyra84632;rank=8 scaffold_118 . CDS 120967 121095 . + 0 ID=Phyra84632;Parent=Phyra84632;rank=9 scaffold_118 . CDS 121154 121282 . + 0 ID=Phyra84632;Parent=Phyra84632;rank=10 scaffold_118 . CDS 121372 123034 . + 0 ID=Phyra84632;Parent=Phyra84632;rank=11 scaffold_118 . CDS 123106 123220 . + 0 ID=Phyra84632;Parent=Phyra84632;rank=12 scaffold_118 . CDS 123286 123435 . + 0 ID=Phyra84632;Parent=Phyra84632;rank=13 scaffold_118 . CDS 123524 123719 . + 0 ID=Phyra84632;Parent=Phyra84632;rank=14 scaffold_118 . CDS 123790 124133 . + 0 ID=Phyra84632;Parent=Phyra84632;rank=15 scaffold_118 . biological_region 122766 122768 0.999 - . logic_name=eponine scaffold_118 . biological_region 124819 124823 0.999 + . logic_name=eponine scaffold_118 . biological_region 126193 126195 0.999 + . logic_name=eponine scaffold_118 . biological_region 126234 126238 0.999 - . logic_name=eponine scaffold_118 . biological_region 126258 126262 0.999 - . logic_name=eponine scaffold_118 . biological_region 126315 126318 0.999 + . logic_name=eponine scaffold_118 ensembl protein_coding_gene 124259 127441 . - . ID=Phyra72256;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_118000004;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 124259 127441 . - . ID=Phyra72256;Parent=Phyra72256;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 124259 127441 . - 0 ID=Phyra72256;Parent=Phyra72256;rank=1 scaffold_118 . exon 124259 127441 . - . ID=Phyra72256.1;Parent=Phyra72256;constitutive=1;rank=1 scaffold_118 . exon 120251 120329 . + . ID=Phyra84632.6;Parent=Phyra84632;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_118 . exon 120413 120706 . + . ID=Phyra84632.7;Parent=Phyra84632;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_118 . exon 120772 120903 . + . ID=Phyra84632.8;Parent=Phyra84632;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_118 . exon 120967 121095 . + . ID=Phyra84632.9;Parent=Phyra84632;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_118 . exon 121154 121282 . + . ID=Phyra84632.10;Parent=Phyra84632;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_118 . exon 121372 123034 . + . ID=Phyra84632.11;Parent=Phyra84632;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_118 . exon 123106 123220 . + . ID=Phyra84632.12;Parent=Phyra84632;constitutive=1;ensembl_phase=2;rank=12 scaffold_118 . exon 123286 123435 . + . ID=Phyra84632.13;Parent=Phyra84632;constitutive=1;rank=13 scaffold_118 . exon 123524 123719 . + . ID=Phyra84632.14;Parent=Phyra84632;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_118 . exon 123790 124133 . + . ID=Phyra84632.15;Parent=Phyra84632;constitutive=1;ensembl_phase=1;rank=15 scaffold_118 ensembl protein_coding_gene 128409 128771 . + . ID=Phyra84634;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_118000041;logic_name=jgi_phyra1 scaffold_118 ensembl transcript 128409 128771 . + . ID=Phyra84634;Parent=Phyra84634;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_118 . CDS 128409 128771 . + 0 ID=Phyra84634;Parent=Phyra84634;rank=1 scaffold_118 . exon 128409 128771 . + . ID=Phyra84634.1;Parent=Phyra84634;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_116 1 134645 scaffold_116 . biological_region 4054 4054 0.999 - . logic_name=eponine scaffold_116 . biological_region 6067 6069 0.999 + . logic_name=eponine scaffold_116 . biological_region 9169 9170 0.999 - . logic_name=eponine scaffold_116 ensembl protein_coding_gene 38 1559 . - . ID=Phyra84532;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000001;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 38 1559 . - . ID=Phyra84532;Parent=Phyra84532;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 38 1559 . - 0 ID=Phyra84532;Parent=Phyra84532;rank=1 scaffold_116 . exon 38 1559 . - . ID=Phyra84532.1;Parent=Phyra84532;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_116 ensembl protein_coding_gene 3151 3855 . - . ID=Phyra84533;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000002;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 3151 3855 . - . ID=Phyra84533;Parent=Phyra84533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 3151 3855 . - 0 ID=Phyra84533;Parent=Phyra84533;rank=1 scaffold_116 . exon 3151 3855 . - . ID=Phyra84533.1;Parent=Phyra84533;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 5233 9506 . - . ID=Phyra84534;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000003;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 5233 9506 . - . ID=Phyra84534;Parent=Phyra84534;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 5233 8945 . - 0 ID=Phyra84534;Parent=Phyra84534;rank=3 scaffold_116 . exon 5233 8945 . - . ID=Phyra84534.3;Parent=Phyra84534;constitutive=1;ensembl_phase=1;rank=3 scaffold_116 . CDS 9039 9417 . - 0 ID=Phyra84534;Parent=Phyra84534;rank=2 scaffold_116 . exon 9039 9417 . - . ID=Phyra84534.2;Parent=Phyra84534;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_116 . CDS 9492 9506 . - 0 ID=Phyra84534;Parent=Phyra84534;rank=1 scaffold_116 . exon 9492 9506 . - . ID=Phyra84534.1;Parent=Phyra84534;constitutive=1;rank=1 scaffold_116 . repeat_region 15327 15359 . ? . description=trf scaffold_116 . repeat_region 17311 17348 . ? . description=trf scaffold_116 ensembl protein_coding_gene 10098 12489 . + . ID=Phyra84535;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000004;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 10098 12489 . + . ID=Phyra84535;Parent=Phyra84535;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 10098 10274 . + 0 ID=Phyra84535;Parent=Phyra84535;rank=1 scaffold_116 . exon 10098 10274 . + . ID=Phyra84535.1;Parent=Phyra84535;constitutive=1;rank=1 scaffold_116 . CDS 10339 10869 . + 0 ID=Phyra84535;Parent=Phyra84535;rank=2 scaffold_116 . exon 10339 10869 . + . ID=Phyra84535.2;Parent=Phyra84535;constitutive=1;rank=2 scaffold_116 . CDS 10963 12489 . + 0 ID=Phyra84535;Parent=Phyra84535;rank=3 scaffold_116 . exon 10963 12489 . + . ID=Phyra84535.3;Parent=Phyra84535;constitutive=1;rank=3 scaffold_116 ensembl protein_coding_gene 13832 15286 . + . ID=Phyra84536;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000005;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 13832 15286 . + . ID=Phyra84536;Parent=Phyra84536;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 13832 15286 . + 0 ID=Phyra84536;Parent=Phyra84536;rank=1 scaffold_116 . exon 13832 15286 . + . ID=Phyra84536.1;Parent=Phyra84536;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 16360 16914 . + . ID=Phyra84537;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000006;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 16360 16914 . + . ID=Phyra84537;Parent=Phyra84537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 16360 16914 . + 0 ID=Phyra84537;Parent=Phyra84537;rank=1 scaffold_116 . exon 16360 16914 . + . ID=Phyra84537.1;Parent=Phyra84537;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 17257 19998 . - . ID=Phyra84538;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000007;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 17257 19998 . - . ID=Phyra84538;Parent=Phyra84538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 17257 19998 . - 0 ID=Phyra84538;Parent=Phyra84538;rank=1 scaffold_116 . exon 17257 19998 . - . ID=Phyra84538.1;Parent=Phyra84538;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 21105 21644 . - . ID=Phyra84539;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000008;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 21105 21644 . - . ID=Phyra84539;Parent=Phyra84539;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 21105 21644 . - 0 ID=Phyra84539;Parent=Phyra84539;rank=1 scaffold_116 . exon 21105 21644 . - . ID=Phyra84539.1;Parent=Phyra84539;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 22183 23951 . - . ID=Phyra84540;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000009;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 22183 23951 . - . ID=Phyra84540;Parent=Phyra84540;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 22183 23866 . - 0 ID=Phyra84540;Parent=Phyra84540;rank=2 scaffold_116 . exon 22183 23866 . - . ID=Phyra84540.2;Parent=Phyra84540;constitutive=1;ensembl_phase=2;rank=2 scaffold_116 . CDS 23899 23951 . - 0 ID=Phyra84540;Parent=Phyra84540;rank=1 scaffold_116 . exon 23899 23951 . - . ID=Phyra84540.1;Parent=Phyra84540;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_116 ensembl protein_coding_gene 25581 27722 . + . ID=Phyra84541;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000010;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 25581 27722 . + . ID=Phyra84541;Parent=Phyra84541;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 25581 27722 . + 0 ID=Phyra84541;Parent=Phyra84541;rank=1 scaffold_116 . exon 25581 27722 . + . ID=Phyra84541.1;Parent=Phyra84541;constitutive=1;rank=1 scaffold_116 . biological_region 31702 31705 0.999 - . logic_name=eponine scaffold_116 . biological_region 32699 32704 0.999 + . logic_name=eponine scaffold_116 . biological_region 32790 32790 0.999 - . logic_name=eponine scaffold_116 . repeat_region 32923 32967 . ? . description=trf scaffold_116 . repeat_region 33912 33945 . ? . description=dust scaffold_116 ensembl protein_coding_gene 29344 29835 . + . ID=Phyra84542;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000011;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 29344 29835 . + . ID=Phyra84542;Parent=Phyra84542;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 29344 29835 . + 0 ID=Phyra84542;Parent=Phyra84542;rank=1 scaffold_116 . exon 29344 29835 . + . ID=Phyra84542.1;Parent=Phyra84542;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 30010 32849 . - . ID=Phyra84543;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000012;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 30010 32849 . - . ID=Phyra84543;Parent=Phyra84543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 30010 31209 . - 0 ID=Phyra84543;Parent=Phyra84543;rank=4 scaffold_116 . exon 30010 31209 . - . ID=Phyra84543.4;Parent=Phyra84543;constitutive=1;rank=4 scaffold_116 . CDS 31285 31654 . - 0 ID=Phyra84543;Parent=Phyra84543;rank=3 scaffold_116 . exon 31285 31654 . - . ID=Phyra84543.3;Parent=Phyra84543;constitutive=1;ensembl_phase=2;rank=3 scaffold_116 . CDS 31754 32375 . - 0 ID=Phyra84543;Parent=Phyra84543;rank=2 scaffold_116 . exon 31754 32375 . - . ID=Phyra84543.2;Parent=Phyra84543;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_116 . CDS 32456 32849 . - 0 ID=Phyra84543;Parent=Phyra84543;rank=1 scaffold_116 . exon 32456 32849 . - . ID=Phyra84543.1;Parent=Phyra84543;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_116 ensembl protein_coding_gene 33793 34322 . + . ID=Phyra84544;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000013;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 33793 34322 . + . ID=Phyra84544;Parent=Phyra84544;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 33793 33801 . + 0 ID=Phyra84544;Parent=Phyra84544;rank=1 scaffold_116 . exon 33793 33801 . + . ID=Phyra84544.1;Parent=Phyra84544;constitutive=1;rank=1 scaffold_116 . CDS 33886 33888 . + 0 ID=Phyra84544;Parent=Phyra84544;rank=2 scaffold_116 . exon 33886 33888 . + . ID=Phyra84544.2;Parent=Phyra84544;constitutive=1;rank=2 scaffold_116 . CDS 33954 34322 . + 0 ID=Phyra84544;Parent=Phyra84544;rank=3 scaffold_116 . exon 33954 34322 . + . ID=Phyra84544.3;Parent=Phyra84544;constitutive=1;rank=3 scaffold_116 ensembl protein_coding_gene 34934 35343 . - . ID=Phyra84545;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000014;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 34934 35343 . - . ID=Phyra84545;Parent=Phyra84545;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 34934 35162 . - 0 ID=Phyra84545;Parent=Phyra84545;rank=2 scaffold_116 . exon 34934 35162 . - . ID=Phyra84545.2;Parent=Phyra84545;constitutive=1;ensembl_phase=2;rank=2 scaffold_116 . CDS 35210 35343 . - 0 ID=Phyra84545;Parent=Phyra84545;rank=1 scaffold_116 . exon 35210 35343 . - . ID=Phyra84545.1;Parent=Phyra84545;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_116 ensembl protein_coding_gene 37854 39074 . + . ID=Phyra84546;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000015;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 37854 39074 . + . ID=Phyra84546;Parent=Phyra84546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 37854 39074 . + 0 ID=Phyra84546;Parent=Phyra84546;rank=1 scaffold_116 . exon 37854 39074 . + . ID=Phyra84546.1;Parent=Phyra84546;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 44802 48649 . - . ID=Phyra84549;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000018;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 44802 48649 . - . ID=Phyra84549;Parent=Phyra84549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 44802 45937 . - 0 ID=Phyra84549;Parent=Phyra84549;rank=7 scaffold_116 . exon 44802 45937 . - . ID=Phyra84549.7;Parent=Phyra84549;constitutive=1;ensembl_phase=1;rank=7 scaffold_116 . CDS 46007 46137 . - 0 ID=Phyra84549;Parent=Phyra84549;rank=6 scaffold_116 . exon 46007 46137 . - . ID=Phyra84549.6;Parent=Phyra84549;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_116 . CDS 46202 46255 . - 0 ID=Phyra84549;Parent=Phyra84549;rank=5 scaffold_116 . exon 46202 46255 . - . ID=Phyra84549.5;Parent=Phyra84549;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_116 . CDS 46283 46414 . - 0 ID=Phyra84549;Parent=Phyra84549;rank=4 scaffold_116 . exon 46283 46414 . - . ID=Phyra84549.4;Parent=Phyra84549;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_116 . CDS 46788 47937 . - 0 ID=Phyra84549;Parent=Phyra84549;rank=3 scaffold_116 . exon 46788 47937 . - . ID=Phyra84549.3;Parent=Phyra84549;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_116 . CDS 48014 48554 . - 0 ID=Phyra84549;Parent=Phyra84549;rank=2 scaffold_116 . exon 48014 48554 . - . ID=Phyra84549.2;Parent=Phyra84549;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_116 . CDS 48647 48649 . - 0 ID=Phyra84549;Parent=Phyra84549;rank=1 scaffold_116 ensembl protein_coding_gene 40301 44254 . - . ID=Phyra96877;biotype=protein_coding;external_name=C_scaffold_116000004;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 40301 44254 . - . ID=Phyra96877;Parent=Phyra96877;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 40301 41447 . - 0 ID=Phyra96877;Parent=Phyra96877;rank=8 scaffold_116 . exon 40301 41447 . - . ID=Phyra96877.8;Parent=Phyra96877;constitutive=1;ensembl_phase=2;rank=8 scaffold_116 . CDS 41499 41541 . - 0 ID=Phyra96877;Parent=Phyra96877;rank=7 scaffold_116 . exon 41499 41541 . - . ID=Phyra96877.7;Parent=Phyra96877;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_116 . CDS 41614 41688 . - 0 ID=Phyra96877;Parent=Phyra96877;rank=6 scaffold_116 . exon 41614 41688 . - . ID=Phyra96877.6;Parent=Phyra96877;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_116 . CDS 41735 41975 . - 0 ID=Phyra96877;Parent=Phyra96877;rank=5 scaffold_116 . exon 41735 41975 . - . ID=Phyra96877.5;Parent=Phyra96877;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_116 . CDS 42509 43316 . - 0 ID=Phyra96877;Parent=Phyra96877;rank=4 scaffold_116 . exon 42509 43316 . - . ID=Phyra96877.4;Parent=Phyra96877;constitutive=1;ensembl_phase=2;rank=4 scaffold_116 . CDS 43461 43565 . - 0 ID=Phyra96877;Parent=Phyra96877;rank=3 scaffold_116 . exon 43461 43565 . - . ID=Phyra96877.3;Parent=Phyra96877;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_116 . CDS 43870 44154 . - 0 ID=Phyra96877;Parent=Phyra96877;rank=2 scaffold_116 . exon 43870 44154 . - . ID=Phyra96877.2;Parent=Phyra96877;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_116 . CDS 44235 44254 . - 0 ID=Phyra96877;Parent=Phyra96877;rank=1 scaffold_116 . exon 44235 44254 . - . ID=Phyra96877.1;Parent=Phyra96877;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_116 . repeat_region 48388 48446 . ? . description=trf scaffold_116 . repeat_region 54972 55018 . ? . description=trf scaffold_116 . exon 48647 48649 . - . ID=Phyra84549.1;Parent=Phyra84549;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 49043 52762 . - . ID=Phyra84550;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000019;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 49043 52762 . - . ID=Phyra84550;Parent=Phyra84550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 49043 51285 . - 0 ID=Phyra84550;Parent=Phyra84550;rank=2 scaffold_116 . exon 49043 51285 . - . ID=Phyra84550.2;Parent=Phyra84550;constitutive=1;ensembl_phase=1;rank=2 scaffold_116 . CDS 51607 52762 . - 0 ID=Phyra84550;Parent=Phyra84550;rank=1 scaffold_116 . exon 51607 52762 . - . ID=Phyra84550.1;Parent=Phyra84550;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_116 ensembl protein_coding_gene 55221 57137 . - . ID=Phyra84551;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000020;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 55221 57137 . - . ID=Phyra84551;Parent=Phyra84551;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 55221 57137 . - 0 ID=Phyra84551;Parent=Phyra84551;rank=1 scaffold_116 . exon 55221 57137 . - . ID=Phyra84551.1;Parent=Phyra84551;constitutive=1;rank=1 scaffold_116 . repeat_region 63479 63754 . + . description=Polinton-1_PI scaffold_116 ensembl protein_coding_gene 57716 59830 . + . ID=Phyra84552;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000021;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 57716 59830 . + . ID=Phyra84552;Parent=Phyra84552;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 57716 59830 . + 0 ID=Phyra84552;Parent=Phyra84552;rank=1 scaffold_116 . exon 57716 59830 . + . ID=Phyra84552.1;Parent=Phyra84552;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 59902 61896 . - . ID=Phyra84553;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000022;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 59902 61896 . - . ID=Phyra84553;Parent=Phyra84553;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 59902 61896 . - 0 ID=Phyra84553;Parent=Phyra84553;rank=1 scaffold_116 . exon 59902 61896 . - . ID=Phyra84553.1;Parent=Phyra84553;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 64179 66239 . + . ID=Phyra84554;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000023;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 64179 66239 . + . ID=Phyra84554;Parent=Phyra84554;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 64179 66239 . + 0 ID=Phyra84554;Parent=Phyra84554;rank=1 scaffold_116 . exon 64179 66239 . + . ID=Phyra84554.1;Parent=Phyra84554;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 66861 68852 . + . ID=Phyra84555;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000024;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 66861 68852 . + . ID=Phyra84555;Parent=Phyra84555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 66861 68852 . + 0 ID=Phyra84555;Parent=Phyra84555;rank=1 scaffold_116 . exon 66861 68852 . + . ID=Phyra84555.1;Parent=Phyra84555;constitutive=1;rank=1 scaffold_116 . biological_region 72707 72710 0.999 - . logic_name=eponine scaffold_116 . biological_region 72764 72765 0.999 + . logic_name=eponine scaffold_116 . biological_region 74704 74705 0.999 + . logic_name=eponine scaffold_116 ensembl protein_coding_gene 69130 69399 . - . ID=Phyra40242;biotype=protein_coding;external_name=gwEuk.116.24.1;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 69130 69399 . - . ID=Phyra40242;Parent=Phyra40242;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 69130 69399 . - 0 ID=Phyra40242;Parent=Phyra40242;rank=1 scaffold_116 . exon 69130 69399 . - . ID=Phyra40242.1;Parent=Phyra40242;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 72538 75120 . + . ID=Phyra84556;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000025;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 72538 75120 . + . ID=Phyra84556;Parent=Phyra84556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 72538 74022 . + 0 ID=Phyra84556;Parent=Phyra84556;rank=1 scaffold_116 . exon 72538 74022 . + . ID=Phyra84556.1;Parent=Phyra84556;constitutive=1;rank=1 scaffold_116 . CDS 74152 75120 . + 0 ID=Phyra84556;Parent=Phyra84556;rank=2 scaffold_116 . exon 74152 75120 . + . ID=Phyra84556.2;Parent=Phyra84556;constitutive=1;rank=2 scaffold_116 ensembl protein_coding_gene 75254 77185 . - . ID=Phyra84557;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000026;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 75254 77185 . - . ID=Phyra84557;Parent=Phyra84557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 75254 77185 . - 0 ID=Phyra84557;Parent=Phyra84557;rank=1 scaffold_116 . exon 75254 77185 . - . ID=Phyra84557.1;Parent=Phyra84557;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 78029 79276 . + . ID=Phyra84558;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000027;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 78029 79276 . + . ID=Phyra84558;Parent=Phyra84558;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 78029 79276 . + 0 ID=Phyra84558;Parent=Phyra84558;rank=1 scaffold_116 . exon 78029 79276 . + . ID=Phyra84558.1;Parent=Phyra84558;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 79940 88730 . + . ID=Phyra84559;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000028;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 79940 88730 . + . ID=Phyra84559;Parent=Phyra84559;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 79940 80312 . + 0 ID=Phyra84559;Parent=Phyra84559;rank=1 scaffold_116 . exon 79940 80312 . + . ID=Phyra84559.1;Parent=Phyra84559;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_116 . CDS 80463 80907 . + 0 ID=Phyra84559;Parent=Phyra84559;rank=2 scaffold_116 . exon 80463 80907 . + . ID=Phyra84559.2;Parent=Phyra84559;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_116 . CDS 81053 81955 . + 0 ID=Phyra84559;Parent=Phyra84559;rank=3 scaffold_116 . exon 81053 81955 . + . ID=Phyra84559.3;Parent=Phyra84559;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_116 . CDS 82080 84021 . + 0 ID=Phyra84559;Parent=Phyra84559;rank=4 scaffold_116 . exon 82080 84021 . + . ID=Phyra84559.4;Parent=Phyra84559;constitutive=1;ensembl_phase=2;rank=4 scaffold_116 . CDS 84087 86264 . + 0 ID=Phyra84559;Parent=Phyra84559;rank=5 scaffold_116 . exon 84087 86264 . + . ID=Phyra84559.5;Parent=Phyra84559;constitutive=1;rank=5 scaffold_116 . CDS 86619 88730 . + 0 ID=Phyra84559;Parent=Phyra84559;rank=6 scaffold_116 . repeat_region 88864 88924 . ? . description=dust scaffold_116 . repeat_region 88866 88903 . ? . description=trf scaffold_116 . biological_region 91186 91188 0.999 - . logic_name=eponine scaffold_116 . biological_region 95667 95669 0.999 - . logic_name=eponine scaffold_116 . exon 86619 88730 . + . ID=Phyra84559.6;Parent=Phyra84559;constitutive=1;rank=6 scaffold_116 ensembl protein_coding_gene 88856 89814 . - . ID=Phyra84560;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000029;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 88856 89814 . - . ID=Phyra84560;Parent=Phyra84560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 88856 88951 . - 0 ID=Phyra84560;Parent=Phyra84560;rank=3 scaffold_116 . exon 88856 88951 . - . ID=Phyra84560.3;Parent=Phyra84560;constitutive=1;rank=3 scaffold_116 . CDS 89017 89124 . - 0 ID=Phyra84560;Parent=Phyra84560;rank=2 scaffold_116 . exon 89017 89124 . - . ID=Phyra84560.2;Parent=Phyra84560;constitutive=1;rank=2 scaffold_116 . CDS 89191 89814 . - 0 ID=Phyra84560;Parent=Phyra84560;rank=1 scaffold_116 . exon 89191 89814 . - . ID=Phyra84560.1;Parent=Phyra84560;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 90282 92636 . + . ID=Phyra84561;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000030;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 90282 92636 . + . ID=Phyra84561;Parent=Phyra84561;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 90282 90732 . + 0 ID=Phyra84561;Parent=Phyra84561;rank=1 scaffold_116 . exon 90282 90732 . + . ID=Phyra84561.1;Parent=Phyra84561;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_116 . CDS 90798 90991 . + 0 ID=Phyra84561;Parent=Phyra84561;rank=2 scaffold_116 . exon 90798 90991 . + . ID=Phyra84561.2;Parent=Phyra84561;constitutive=1;ensembl_phase=1;rank=2 scaffold_116 . CDS 91059 91342 . + 0 ID=Phyra84561;Parent=Phyra84561;rank=3 scaffold_116 . exon 91059 91342 . + . ID=Phyra84561.3;Parent=Phyra84561;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_116 . CDS 91541 92636 . + 0 ID=Phyra84561;Parent=Phyra84561;rank=4 scaffold_116 . exon 91541 92636 . + . ID=Phyra84561.4;Parent=Phyra84561;constitutive=1;ensembl_phase=2;rank=4 scaffold_116 ensembl protein_coding_gene 95170 95973 . + . ID=Phyra84564;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000033;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 95170 95973 . + . ID=Phyra84564;Parent=Phyra84564;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 95170 95973 . + 0 ID=Phyra84564;Parent=Phyra84564;rank=1 scaffold_116 . exon 95170 95973 . + . ID=Phyra84564.1;Parent=Phyra84564;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 92674 94737 . - . ID=Phyra96881;biotype=protein_coding;external_name=C_scaffold_116000008;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 92674 94737 . - . ID=Phyra96881;Parent=Phyra96881;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 92674 92718 . - 0 ID=Phyra96881;Parent=Phyra96881;rank=7 scaffold_116 . exon 92674 92718 . - . ID=Phyra96881.7;Parent=Phyra96881;constitutive=1;rank=7 scaffold_116 . CDS 92757 92950 . - 0 ID=Phyra96881;Parent=Phyra96881;rank=6 scaffold_116 . exon 92757 92950 . - . ID=Phyra96881.6;Parent=Phyra96881;constitutive=1;ensembl_phase=1;rank=6 scaffold_116 . CDS 92996 93515 . - 0 ID=Phyra96881;Parent=Phyra96881;rank=5 scaffold_116 . exon 92996 93515 . - . ID=Phyra96881.5;Parent=Phyra96881;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_116 . CDS 93598 93802 . - 0 ID=Phyra96881;Parent=Phyra96881;rank=4 scaffold_116 . exon 93598 93802 . - . ID=Phyra96881.4;Parent=Phyra96881;constitutive=1;ensembl_phase=2;rank=4 scaffold_116 . CDS 94013 94360 . - 0 ID=Phyra96881;Parent=Phyra96881;rank=3 scaffold_116 . exon 94013 94360 . - . ID=Phyra96881.3;Parent=Phyra96881;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_116 . CDS 94388 94543 . - 0 ID=Phyra96881;Parent=Phyra96881;rank=2 scaffold_116 . exon 94388 94543 . - . ID=Phyra96881.2;Parent=Phyra96881;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_116 . CDS 94631 94737 . - 0 ID=Phyra96881;Parent=Phyra96881;rank=1 scaffold_116 . exon 94631 94737 . - . ID=Phyra96881.1;Parent=Phyra96881;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_116 ensembl protein_coding_gene 96787 99480 . - . ID=Phyra84565;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000034;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 96787 99480 . - . ID=Phyra84565;Parent=Phyra84565;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 96787 99480 . - 0 ID=Phyra84565;Parent=Phyra84565;rank=1 scaffold_116 . exon 96787 99480 . - . ID=Phyra84565.1;Parent=Phyra84565;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 99755 100828 . + . ID=Phyra84566;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000035;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 99755 100828 . + . ID=Phyra84566;Parent=Phyra84566;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 99755 100828 . + 0 ID=Phyra84566;Parent=Phyra84566;rank=1 scaffold_116 . exon 99755 100828 . + . ID=Phyra84566.1;Parent=Phyra84566;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 101161 103338 . + . ID=Phyra84567;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000036;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 101161 103338 . + . ID=Phyra84567;Parent=Phyra84567;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 101161 101209 . + 0 ID=Phyra84567;Parent=Phyra84567;rank=1 scaffold_116 . exon 101161 101209 . + . ID=Phyra84567.1;Parent=Phyra84567;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_116 . CDS 101297 103338 . + 0 ID=Phyra84567;Parent=Phyra84567;rank=2 scaffold_116 . exon 101297 103338 . + . ID=Phyra84567.2;Parent=Phyra84567;constitutive=1;ensembl_phase=1;rank=2 scaffold_116 ensembl protein_coding_gene 103654 107232 . - . ID=Phyra84568;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000037;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 103654 107232 . - . ID=Phyra84568;Parent=Phyra84568;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 103654 104499 . - 0 ID=Phyra84568;Parent=Phyra84568;rank=5 scaffold_116 . exon 103654 104499 . - . ID=Phyra84568.5;Parent=Phyra84568;constitutive=1;rank=5 scaffold_116 . CDS 104570 105692 . - 0 ID=Phyra84568;Parent=Phyra84568;rank=4 scaffold_116 . exon 104570 105692 . - . ID=Phyra84568.4;Parent=Phyra84568;constitutive=1;ensembl_phase=2;rank=4 scaffold_116 . CDS 105784 106052 . - 0 ID=Phyra84568;Parent=Phyra84568;rank=3 scaffold_116 . exon 105784 106052 . - . ID=Phyra84568.3;Parent=Phyra84568;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_116 . CDS 106092 106131 . - 0 ID=Phyra84568;Parent=Phyra84568;rank=2 scaffold_116 . CDS 106199 107232 . - 0 ID=Phyra84568;Parent=Phyra84568;rank=1 scaffold_116 . biological_region 106341 106346 0.999 + . logic_name=eponine scaffold_116 . biological_region 107608 107611 0.999 + . logic_name=eponine scaffold_116 . repeat_region 109319 109536 . ? . description=trf scaffold_116 . repeat_region 113328 113352 . ? . description=trf scaffold_116 . biological_region 113516 113519 0.999 + . logic_name=eponine scaffold_116 . biological_region 113592 113595 0.999 + . logic_name=eponine scaffold_116 . biological_region 113648 113651 0.999 + . logic_name=eponine scaffold_116 . biological_region 113700 113703 0.999 + . logic_name=eponine scaffold_116 . biological_region 113843 113846 0.999 - . logic_name=eponine scaffold_116 . repeat_region 114297 114304 . ? . description=dust scaffold_116 . exon 106092 106131 . - . ID=Phyra84568.2;Parent=Phyra84568;constitutive=1;ensembl_phase=2;rank=2 scaffold_116 . exon 106199 107232 . - . ID=Phyra84568.1;Parent=Phyra84568;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_116 ensembl protein_coding_gene 107593 110178 . + . ID=Phyra96886;biotype=protein_coding;external_name=C_scaffold_116000013;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 107593 110178 . + . ID=Phyra96886;Parent=Phyra96886;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 107593 108039 . + 0 ID=Phyra96886;Parent=Phyra96886;rank=1 scaffold_116 . exon 107593 108039 . + . ID=Phyra96886.1;Parent=Phyra96886;constitutive=1;rank=1 scaffold_116 . CDS 108115 108465 . + 0 ID=Phyra96886;Parent=Phyra96886;rank=2 scaffold_116 . exon 108115 108465 . + . ID=Phyra96886.2;Parent=Phyra96886;constitutive=1;rank=2 scaffold_116 . CDS 108536 108920 . + 0 ID=Phyra96886;Parent=Phyra96886;rank=3 scaffold_116 . exon 108536 108920 . + . ID=Phyra96886.3;Parent=Phyra96886;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_116 . CDS 109085 109423 . + 0 ID=Phyra96886;Parent=Phyra96886;rank=4 scaffold_116 . exon 109085 109423 . + . ID=Phyra96886.4;Parent=Phyra96886;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_116 . CDS 109529 110178 . + 0 ID=Phyra96886;Parent=Phyra96886;rank=5 scaffold_116 . exon 109529 110178 . + . ID=Phyra96886.5;Parent=Phyra96886;constitutive=1;ensembl_phase=1;rank=5 scaffold_116 ensembl protein_coding_gene 110918 116315 . - . ID=Phyra96888;biotype=protein_coding;external_name=C_scaffold_116000015;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 110918 116315 . - . ID=Phyra96888;Parent=Phyra96888;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 110918 110928 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=20 scaffold_116 . exon 110918 110928 . - . ID=Phyra96888.20;Parent=Phyra96888;constitutive=1;ensembl_phase=1;rank=20 scaffold_116 . CDS 110954 111027 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=19 scaffold_116 . exon 110954 111027 . - . ID=Phyra96888.19;Parent=Phyra96888;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=19 scaffold_116 . CDS 111218 111271 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=18 scaffold_116 . exon 111218 111271 . - . ID=Phyra96888.18;Parent=Phyra96888;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=18 scaffold_116 . CDS 111338 111433 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=17 scaffold_116 . exon 111338 111433 . - . ID=Phyra96888.17;Parent=Phyra96888;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=17 scaffold_116 . CDS 111653 111983 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=16 scaffold_116 . exon 111653 111983 . - . ID=Phyra96888.16;Parent=Phyra96888;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=16 scaffold_116 . CDS 112050 112198 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=15 scaffold_116 . exon 112050 112198 . - . ID=Phyra96888.15;Parent=Phyra96888;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=15 scaffold_116 . CDS 112261 112306 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=14 scaffold_116 . exon 112261 112306 . - . ID=Phyra96888.14;Parent=Phyra96888;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=14 scaffold_116 . CDS 112394 113042 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=13 scaffold_116 . exon 112394 113042 . - . ID=Phyra96888.13;Parent=Phyra96888;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_116 . CDS 113108 113320 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=12 scaffold_116 . exon 113108 113320 . - . ID=Phyra96888.12;Parent=Phyra96888;constitutive=1;rank=12 scaffold_116 . CDS 113515 114034 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=11 scaffold_116 . exon 113515 114034 . - . ID=Phyra96888.11;Parent=Phyra96888;constitutive=1;ensembl_phase=2;rank=11 scaffold_116 . CDS 114153 114250 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=10 scaffold_116 . exon 114153 114250 . - . ID=Phyra96888.10;Parent=Phyra96888;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_116 . CDS 114322 114363 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=9 scaffold_116 . exon 114322 114363 . - . ID=Phyra96888.9;Parent=Phyra96888;constitutive=1;rank=9 scaffold_116 . CDS 114432 114509 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=8 scaffold_116 . exon 114432 114509 . - . ID=Phyra96888.8;Parent=Phyra96888;constitutive=1;rank=8 scaffold_116 . CDS 114573 114668 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=7 scaffold_116 . exon 114573 114668 . - . ID=Phyra96888.7;Parent=Phyra96888;constitutive=1;rank=7 scaffold_116 . CDS 114740 114988 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=6 scaffold_116 . exon 114740 114988 . - . ID=Phyra96888.6;Parent=Phyra96888;constitutive=1;rank=6 scaffold_116 . CDS 115053 115257 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=5 scaffold_116 . exon 115053 115257 . - . ID=Phyra96888.5;Parent=Phyra96888;constitutive=1;ensembl_phase=2;rank=5 scaffold_116 . CDS 115315 115872 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=4 scaffold_116 . exon 115315 115872 . - . ID=Phyra96888.4;Parent=Phyra96888;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_116 . CDS 115936 116067 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=3 scaffold_116 . CDS 116113 116200 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=2 scaffold_116 . CDS 116255 116315 . - 0 ID=Phyra96888;Parent=Phyra96888;rank=1 scaffold_116 ensembl protein_coding_gene 124273 125403 . + . ID=Phyra40258;biotype=protein_coding;external_name=gwEuk.116.40.1;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 124273 125403 . + . ID=Phyra40258;Parent=Phyra40258;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 124273 124539 . + 0 ID=Phyra40258;Parent=Phyra40258;rank=1 scaffold_116 . exon 124273 124539 . + . ID=Phyra40258.1;Parent=Phyra40258;constitutive=1;rank=1 scaffold_116 . CDS 124617 124721 . + 0 ID=Phyra40258;Parent=Phyra40258;rank=2 scaffold_116 . exon 124617 124721 . + . ID=Phyra40258.2;Parent=Phyra40258;constitutive=1;rank=2 scaffold_116 . CDS 124792 124899 . + 0 ID=Phyra40258;Parent=Phyra40258;rank=3 scaffold_116 . exon 124792 124899 . + . ID=Phyra40258.3;Parent=Phyra40258;constitutive=1;rank=3 scaffold_116 . CDS 124968 125033 . + 0 ID=Phyra40258;Parent=Phyra40258;rank=4 scaffold_116 . exon 124968 125033 . + . ID=Phyra40258.4;Parent=Phyra40258;constitutive=1;rank=4 scaffold_116 . CDS 125119 125403 . + 0 ID=Phyra40258;Parent=Phyra40258;rank=5 scaffold_116 ensembl protein_coding_gene 119581 120417 . - . ID=Phyra84571;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000040;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 119581 120417 . - . ID=Phyra84571;Parent=Phyra84571;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 119581 120417 . - 0 ID=Phyra84571;Parent=Phyra84571;rank=1 scaffold_116 . exon 119581 120417 . - . ID=Phyra84571.1;Parent=Phyra84571;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 120859 122270 . + . ID=Phyra84572;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000041;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 120859 122270 . + . ID=Phyra84572;Parent=Phyra84572;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 120859 120892 . + 0 ID=Phyra84572;Parent=Phyra84572;rank=1 scaffold_116 . exon 120859 120892 . + . ID=Phyra84572.1;Parent=Phyra84572;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_116 . CDS 120933 121479 . + 0 ID=Phyra84572;Parent=Phyra84572;rank=2 scaffold_116 . exon 120933 121479 . + . ID=Phyra84572.2;Parent=Phyra84572;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_116 . CDS 121629 121853 . + 0 ID=Phyra84572;Parent=Phyra84572;rank=3 scaffold_116 . exon 121629 121853 . + . ID=Phyra84572.3;Parent=Phyra84572;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_116 . CDS 122006 122270 . + 0 ID=Phyra84572;Parent=Phyra84572;rank=4 scaffold_116 . exon 122006 122270 . + . ID=Phyra84572.4;Parent=Phyra84572;constitutive=1;ensembl_phase=2;rank=4 scaffold_116 . exon 115936 116067 . - . ID=Phyra96888.3;Parent=Phyra96888;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_116 . exon 116113 116200 . - . ID=Phyra96888.2;Parent=Phyra96888;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_116 . exon 116255 116315 . - . ID=Phyra96888.1;Parent=Phyra96888;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_116 . repeat_region 126269 126328 . ? . description=dust scaffold_116 . repeat_region 127473 128890 . ? . description=dust scaffold_116 . biological_region 131122 131128 0.999 - . logic_name=eponine scaffold_116 . repeat_region 131883 131904 . ? . description=dust scaffold_116 . repeat_region 132334 132381 . ? . description=trf scaffold_116 . repeat_region 132669 132690 . ? . description=trf scaffold_116 . repeat_region 132814 132842 . ? . description=trf scaffold_116 . biological_region 134372 134372 0.999 - . logic_name=eponine scaffold_116 . exon 125119 125403 . + . ID=Phyra40258.5;Parent=Phyra40258;constitutive=1;rank=5 scaffold_116 ensembl protein_coding_gene 127128 127398 . + . ID=Phyra40259;biotype=protein_coding;external_name=gwEuk.116.41.1;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 127128 127398 . + . ID=Phyra40259;Parent=Phyra40259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 127128 127259 . + 0 ID=Phyra40259;Parent=Phyra40259;rank=1 scaffold_116 . exon 127128 127259 . + . ID=Phyra40259.1;Parent=Phyra40259;constitutive=1;rank=1 scaffold_116 . CDS 127318 127398 . + 0 ID=Phyra40259;Parent=Phyra40259;rank=2 scaffold_116 . exon 127318 127398 . + . ID=Phyra40259.2;Parent=Phyra40259;constitutive=1;rank=2 scaffold_116 ensembl protein_coding_gene 130822 131828 . - . ID=Phyra84574;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000043;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 130822 131828 . - . ID=Phyra84574;Parent=Phyra84574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 130822 130985 . - 0 ID=Phyra84574;Parent=Phyra84574;rank=3 scaffold_116 . exon 130822 130985 . - . ID=Phyra84574.3;Parent=Phyra84574;constitutive=1;ensembl_phase=1;rank=3 scaffold_116 . CDS 131296 131544 . - 0 ID=Phyra84574;Parent=Phyra84574;rank=2 scaffold_116 . exon 131296 131544 . - . ID=Phyra84574.2;Parent=Phyra84574;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_116 . CDS 131795 131828 . - 0 ID=Phyra84574;Parent=Phyra84574;rank=1 scaffold_116 . exon 131795 131828 . - . ID=Phyra84574.1;Parent=Phyra84574;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_116 ensembl protein_coding_gene 132388 132884 . + . ID=Phyra84575;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_116000044;logic_name=jgi_phyra1 scaffold_116 ensembl transcript 132388 132884 . + . ID=Phyra84575;Parent=Phyra84575;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_116 . CDS 132388 132664 . + 0 ID=Phyra84575;Parent=Phyra84575;rank=1 scaffold_116 . exon 132388 132664 . + . ID=Phyra84575.1;Parent=Phyra84575;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_116 . CDS 132772 132884 . + 0 ID=Phyra84575;Parent=Phyra84575;rank=2 scaffold_116 . exon 132772 132884 . + . ID=Phyra84575.2;Parent=Phyra84575;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_117 1 135202 scaffold_117 . biological_region 386 390 0.999 - . logic_name=eponine scaffold_117 . repeat_region 4210 4318 . ? . description=trf scaffold_117 . repeat_region 4645 4694 . ? . description=dust scaffold_117 . biological_region 5643 5643 0.999 - . logic_name=eponine scaffold_117 . biological_region 7223 7225 0.999 + . logic_name=eponine scaffold_117 ensembl pseudogene 1186 5487 . - . ID=Phyra40264;biotype=pseudogene;external_name=gwEuk.117.2.1;logic_name=jgi_phyra1 scaffold_117 ensembl pseudogene 1186 5487 . - . ID=Phyra40264;Parent=Phyra40264;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_117 . exon 1186 2433 . - . ID=Phyra40264.3;Parent=Phyra40264;constitutive=1;rank=3 scaffold_117 . exon 5221 5336 . - . ID=Phyra40264.2;Parent=Phyra40264;constitutive=1;ensembl_phase=1;rank=2 scaffold_117 . exon 5397 5487 . - . ID=Phyra40264.1;Parent=Phyra40264;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_117 ensembl protein_coding_gene 5802 7484 . - . ID=Phyra40276;biotype=protein_coding;external_name=gwEuk.117.14.1;logic_name=jgi_phyra1 scaffold_117 ensembl transcript 5802 7484 . - . ID=Phyra40276;Parent=Phyra40276;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_117 . CDS 5802 7484 . - 0 ID=Phyra40276;Parent=Phyra40276;rank=1 scaffold_117 . exon 5802 7484 . - . ID=Phyra40276.1;Parent=Phyra40276;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 8183 10002 . - . ID=Phyra72250;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_117000002;logic_name=jgi_phyra1 scaffold_117 ensembl transcript 8183 10002 . - . ID=Phyra72250;Parent=Phyra72250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_117 . CDS 8183 8432 . - 0 ID=Phyra72250;Parent=Phyra72250;rank=9 scaffold_117 . exon 8183 8432 . - . ID=Phyra72250.9;Parent=Phyra72250;constitutive=1;ensembl_phase=2;rank=9 scaffold_117 . CDS 8499 8953 . - 0 ID=Phyra72250;Parent=Phyra72250;rank=8 scaffold_117 . exon 8499 8953 . - . ID=Phyra72250.8;Parent=Phyra72250;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_117 . CDS 9018 9159 . - 0 ID=Phyra72250;Parent=Phyra72250;rank=7 scaffold_117 . exon 9018 9159 . - . ID=Phyra72250.7;Parent=Phyra72250;constitutive=1;ensembl_phase=2;rank=7 scaffold_117 . CDS 9227 9365 . - 0 ID=Phyra72250;Parent=Phyra72250;rank=6 scaffold_117 . exon 9227 9365 . - . ID=Phyra72250.6;Parent=Phyra72250;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_117 . CDS 9430 9504 . - 0 ID=Phyra72250;Parent=Phyra72250;rank=5 scaffold_117 . exon 9430 9504 . - . ID=Phyra72250.5;Parent=Phyra72250;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_117 . CDS 9525 9559 . - 0 ID=Phyra72250;Parent=Phyra72250;rank=4 scaffold_117 . exon 9525 9559 . - . ID=Phyra72250.4;Parent=Phyra72250;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_117 . CDS 9582 9697 . - 0 ID=Phyra72250;Parent=Phyra72250;rank=3 scaffold_117 . exon 9582 9697 . - . ID=Phyra72250.3;Parent=Phyra72250;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_117 . CDS 9768 9880 . - 0 ID=Phyra72250;Parent=Phyra72250;rank=2 scaffold_117 . CDS 9960 10002 . - 0 ID=Phyra72250;Parent=Phyra72250;rank=1 scaffold_117 . exon 9768 9880 . - . ID=Phyra72250.2;Parent=Phyra72250;constitutive=1;ensembl_phase=1;rank=2 scaffold_117 . exon 9960 10002 . - . ID=Phyra72250.1;Parent=Phyra72250;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_117 ensembl protein_coding_gene 10470 11549 . + . ID=Phyra72251;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_117000003;logic_name=jgi_phyra1 scaffold_117 ensembl transcript 10470 11549 . + . ID=Phyra72251;Parent=Phyra72251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_117 . CDS 10470 11549 . + 0 ID=Phyra72251;Parent=Phyra72251;rank=1 scaffold_117 . exon 10470 11549 . + . ID=Phyra72251.1;Parent=Phyra72251;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 12180 12719 . - . ID=Phyra84580;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_117000005;logic_name=jgi_phyra1 scaffold_117 ensembl transcript 12180 12719 . - . ID=Phyra84580;Parent=Phyra84580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_117 . CDS 12180 12719 . - 0 ID=Phyra84580;Parent=Phyra84580;rank=1 scaffold_117 . exon 12180 12719 . - . ID=Phyra84580.1;Parent=Phyra84580;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 15563 15967 . + . ID=Phyra84581;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_117000006;logic_name=jgi_phyra1 scaffold_117 ensembl transcript 15563 15967 . + . ID=Phyra84581;Parent=Phyra84581;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_117 . CDS 15563 15967 . + 0 ID=Phyra84581;Parent=Phyra84581;rank=1 scaffold_117 . exon 15563 15967 . + . ID=Phyra84581.1;Parent=Phyra84581;constitutive=1;rank=1 scaffold_117 . repeat_region 20232 20241 . ? . description=dust scaffold_117 . repeat_region 20490 20711 . - . description=GypsyPi-1c_I-int scaffold_117 . repeat_region 21086 22823 . - . description=GypsyPi-1c_I-int scaffold_117 . repeat_region 22825 22874 . ? . description=dust scaffold_117 . repeat_region 22902 23645 . - . description=GypsyPi-1c_I-int scaffold_117 . repeat_region 23684 26079 . ? . description=dust scaffold_117 . repeat_region 26284 26505 . - . description=GypsyPi-1c_I-int scaffold_117 . repeat_region 26880 29105 . - . description=GypsyPi-1c_I-int scaffold_117 . repeat_region 27544 28015 . ? . description=dust scaffold_117 ensembl protein_coding_gene 28033 29378 . - . ID=Phyra84582;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_117000007;logic_name=jgi_phyra1 scaffold_117 ensembl transcript 28033 29378 . - . ID=Phyra84582;Parent=Phyra84582;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_117 . CDS 28033 28046 . - 0 ID=Phyra84582;Parent=Phyra84582;rank=2 scaffold_117 . exon 28033 28046 . - . ID=Phyra84582.2;Parent=Phyra84582;constitutive=1;ensembl_phase=1;rank=2 scaffold_117 . CDS 28073 29378 . - 0 ID=Phyra84582;Parent=Phyra84582;rank=1 scaffold_117 . exon 28073 29378 . - . ID=Phyra84582.1;Parent=Phyra84582;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_117 . biological_region 29562 29564 0.999 - . logic_name=eponine scaffold_117 . biological_region 29614 29618 0.999 - . logic_name=eponine scaffold_117 . biological_region 29716 29721 0.999 - . logic_name=eponine scaffold_117 . biological_region 31276 31279 0.999 - . logic_name=eponine scaffold_117 . repeat_region 32536 32567 . ? . description=trf scaffold_117 ensembl protein_coding_gene 33649 34132 . + . ID=Phyra84583;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_117000008;logic_name=jgi_phyra1 scaffold_117 ensembl transcript 33649 34132 . + . ID=Phyra84583;Parent=Phyra84583;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_117 . CDS 33649 33696 . + 0 ID=Phyra84583;Parent=Phyra84583;rank=1 scaffold_117 . exon 33649 33696 . + . ID=Phyra84583.1;Parent=Phyra84583;constitutive=1;rank=1 scaffold_117 . CDS 33751 33994 . + 0 ID=Phyra84583;Parent=Phyra84583;rank=2 scaffold_117 . exon 33751 33994 . + . ID=Phyra84583.2;Parent=Phyra84583;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_117 . CDS 34119 34132 . + 0 ID=Phyra84583;Parent=Phyra84583;rank=3 scaffold_117 . exon 34119 34132 . + . ID=Phyra84583.3;Parent=Phyra84583;constitutive=1;ensembl_phase=1;rank=3 scaffold_117 . repeat_region 35666 45319 . ? . description=dust scaffold_117 . repeat_region 45453 46766 . + . description=GypsyPi-1c_I-int scaffold_117 . repeat_region 47077 47630 . ? . description=dust scaffold_117 . repeat_region 47679 48133 . + . description=GypsyPi-1c_I-int scaffold_117 ensembl protein_coding_gene 47677 48063 . + . ID=Phyra40290;biotype=protein_coding;external_name=gwEuk.117.28.1;logic_name=jgi_phyra1 scaffold_117 ensembl transcript 47677 48063 . + . ID=Phyra40290;Parent=Phyra40290;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_117 . CDS 47677 48063 . + 0 ID=Phyra40290;Parent=Phyra40290;rank=1 scaffold_117 . exon 47677 48063 . + . ID=Phyra40290.1;Parent=Phyra40290;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 45724 46961 . + . ID=Phyra84584;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_117000009;logic_name=jgi_phyra1 scaffold_117 ensembl transcript 45724 46961 . + . ID=Phyra84584;Parent=Phyra84584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_117 . CDS 45724 46110 . + 0 ID=Phyra84584;Parent=Phyra84584;rank=1 scaffold_117 . exon 45724 46110 . + . ID=Phyra84584.1;Parent=Phyra84584;constitutive=1;rank=1 scaffold_117 . CDS 46261 46920 . + 0 ID=Phyra84584;Parent=Phyra84584;rank=2 scaffold_117 . exon 46261 46920 . + . ID=Phyra84584.2;Parent=Phyra84584;constitutive=1;rank=2 scaffold_117 . CDS 46959 46961 . + 0 ID=Phyra84584;Parent=Phyra84584;rank=3 scaffold_117 . exon 46959 46961 . + . ID=Phyra84584.3;Parent=Phyra84584;constitutive=1;rank=3 scaffold_117 . biological_region 48395 48397 0.999 - . logic_name=eponine scaffold_117 . biological_region 48430 48435 0.999 - . logic_name=eponine scaffold_117 . biological_region 48449 48455 0.999 + . logic_name=eponine scaffold_117 . biological_region 48688 48691 0.999 - . logic_name=eponine scaffold_117 . biological_region 48845 48850 0.999 + . logic_name=eponine scaffold_117 . biological_region 48900 48904 0.999 + . logic_name=eponine scaffold_117 . biological_region 48950 48957 0.999 - . logic_name=eponine scaffold_117 . biological_region 49008 49008 0.999 - . logic_name=eponine scaffold_117 . biological_region 49312 49316 0.999 - . logic_name=eponine scaffold_117 . repeat_region 49404 49494 . ? . description=trf scaffold_117 . repeat_region 49410 49488 . ? . description=trf scaffold_117 . biological_region 49477 49478 0.999 + . logic_name=eponine scaffold_117 . biological_region 49534 49541 0.999 - . logic_name=eponine scaffold_117 . biological_region 49571 49575 0.999 - . logic_name=eponine scaffold_117 . biological_region 49627 49629 0.999 + . logic_name=eponine scaffold_117 . repeat_region 50375 50406 . ? . description=trf scaffold_117 . repeat_region 55524 55549 . ? . description=trf scaffold_117 . repeat_region 55527 55552 . ? . description=trf scaffold_117 ensembl protein_coding_gene 48832 50175 . - . ID=Phyra84586;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_117000011;logic_name=jgi_phyra1 scaffold_117 ensembl transcript 48832 50175 . - . ID=Phyra84586;Parent=Phyra84586;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_117 . CDS 48832 50175 . - 0 ID=Phyra84586;Parent=Phyra84586;rank=1 scaffold_117 . exon 48832 50175 . - . ID=Phyra84586.1;Parent=Phyra84586;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 53064 53384 . - . ID=Phyra84587;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_117000012;logic_name=jgi_phyra1 scaffold_117 ensembl transcript 53064 53384 . - . ID=Phyra84587;Parent=Phyra84587;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_117 . CDS 53064 53384 . - 0 ID=Phyra84587;Parent=Phyra84587;rank=1 scaffold_117 . exon 53064 53384 . - . ID=Phyra84587.1;Parent=Phyra84587;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 55938 57056 . + . ID=Phyra84588;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_117000013;logic_name=jgi_phyra1 scaffold_117 ensembl transcript 55938 57056 . + . ID=Phyra84588;Parent=Phyra84588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_117 . CDS 55938 56323 . + 0 ID=Phyra84588;Parent=Phyra84588;rank=1 scaffold_117 . exon 55938 56323 . + . ID=Phyra84588.1;Parent=Phyra84588;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_117 . CDS 56390 57056 . + 0 ID=Phyra84588;Parent=Phyra84588;rank=2 scaffold_117 . exon 56390 57056 . + . ID=Phyra84588.2;Parent=Phyra84588;constitutive=1;ensembl_phase=2;rank=2 scaffold_117 ensembl protein_coding_gene 57183 58251 . - . ID=Phyra84589;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_117000014;logic_name=jgi_phyra1 scaffold_117 ensembl transcript 57183 58251 . - . ID=Phyra84589;Parent=Phyra84589;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_117 . CDS 57183 57501 . - 0 ID=Phyra84589;Parent=Phyra84589;rank=4 scaffold_117 . exon 57183 57501 . - . ID=Phyra84589.4;Parent=Phyra84589;constitutive=1;ensembl_phase=2;rank=4 scaffold_117 . CDS 57570 57726 . - 0 ID=Phyra84589;Parent=Phyra84589;rank=3 scaffold_117 . exon 57570 57726 . - . ID=Phyra84589.3;Parent=Phyra84589;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_117 . CDS 57808 57937 . - 0 ID=Phyra84589;Parent=Phyra84589;rank=2 scaffold_117 . exon 57808 57937 . - . ID=Phyra84589.2;Parent=Phyra84589;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_117 . CDS 58012 58251 . - 0 ID=Phyra84589;Parent=Phyra84589;rank=1 scaffold_117 . repeat_region 62041 62048 . ? . description=dust scaffold_117 . repeat_region 65586 65593 . ? . description=dust scaffold_117 . repeat_region 66426 66438 . ? . description=dust scaffold_117 . repeat_region 67358 67366 . ? . description=dust scaffold_117 . exon 58012 58251 . - . ID=Phyra84589.1;Parent=Phyra84589;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 58395 62616 . - . ID=Phyra84590;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_117000015;logic_name=jgi_phyra1 scaffold_117 ensembl transcript 58395 62616 . - . ID=Phyra84590;Parent=Phyra84590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_117 . CDS 58395 58710 . - 0 ID=Phyra84590;Parent=Phyra84590;rank=7 scaffold_117 . exon 58395 58710 . - . ID=Phyra84590.7;Parent=Phyra84590;constitutive=1;ensembl_phase=2;rank=7 scaffold_117 . CDS 58821 58836 . - 0 ID=Phyra84590;Parent=Phyra84590;rank=6 scaffold_117 . exon 58821 58836 . - . ID=Phyra84590.6;Parent=Phyra84590;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_117 . CDS 58929 59508 . - 0 ID=Phyra84590;Parent=Phyra84590;rank=5 scaffold_117 . exon 58929 59508 . - . ID=Phyra84590.5;Parent=Phyra84590;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_117 . CDS 59716 60002 . - 0 ID=Phyra84590;Parent=Phyra84590;rank=4 scaffold_117 . exon 59716 60002 . - . ID=Phyra84590.4;Parent=Phyra84590;constitutive=1;ensembl_phase=1;rank=4 scaffold_117 . CDS 60696 61569 . - 0 ID=Phyra84590;Parent=Phyra84590;rank=3 scaffold_117 . exon 60696 61569 . - . ID=Phyra84590.3;Parent=Phyra84590;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_117 . CDS 61642 62034 . - 0 ID=Phyra84590;Parent=Phyra84590;rank=2 scaffold_117 . exon 61642 62034 . - . ID=Phyra84590.2;Parent=Phyra84590;constitutive=1;rank=2 scaffold_117 . CDS 62095 62616 . - 0 ID=Phyra84590;Parent=Phyra84590;rank=1 scaffold_117 . exon 62095 62616 . - . ID=Phyra84590.1;Parent=Phyra84590;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 65658 67063 . - . ID=Phyra84591;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_117000016;logic_name=jgi_phyra1 scaffold_117 ensembl transcript 65658 67063 . - . ID=Phyra84591;Parent=Phyra84591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_117 . CDS 65658 66241 . - 0 ID=Phyra84591;Parent=Phyra84591;rank=3 scaffold_117 . exon 65658 66241 . - . ID=Phyra84591.3;Parent=Phyra84591;constitutive=1;ensembl_phase=1;rank=3 scaffold_117 . CDS 66366 66388 . - 0 ID=Phyra84591;Parent=Phyra84591;rank=2 scaffold_117 . exon 66366 66388 . - . ID=Phyra84591.2;Parent=Phyra84591;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_117 . CDS 66537 67063 . - 0 ID=Phyra84591;Parent=Phyra84591;rank=1 scaffold_117 . exon 66537 67063 . - . ID=Phyra84591.1;Parent=Phyra84591;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_117 . repeat_region 67687 67711 . ? . description=trf scaffold_117 . biological_region 70993 70993 0.999 - . logic_name=eponine scaffold_117 . repeat_region 72160 72227 . ? . description=trf scaffold_117 . repeat_region 80616 81006 . + . description=GypsyPi-1c_I-int scaffold_117 . repeat_region 81176 82091 . + . description=GypsyPi-1c_I-int scaffold_117 . repeat_region 82301 82896 . - . description=GypsyPi-1c_I-int scaffold_117 . repeat_region 82946 83143 . + . description=GypsyPi-1c_I-int scaffold_117 . repeat_region 86777 87003 . - . description=GypsyPi-1c_I-int scaffold_117 ensembl protein_coding_gene 85345 90918 . - . ID=Phyra84592;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_117000017;logic_name=jgi_phyra1 scaffold_117 ensembl transcript 85345 90918 . - . ID=Phyra84592;Parent=Phyra84592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_117 . CDS 85345 86648 . - 0 ID=Phyra84592;Parent=Phyra84592;rank=7 scaffold_117 . exon 85345 86648 . - . ID=Phyra84592.7;Parent=Phyra84592;constitutive=1;ensembl_phase=1;rank=7 scaffold_117 . CDS 86691 86875 . - 0 ID=Phyra84592;Parent=Phyra84592;rank=6 scaffold_117 . exon 86691 86875 . - . ID=Phyra84592.6;Parent=Phyra84592;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_117 . CDS 86943 87991 . - 0 ID=Phyra84592;Parent=Phyra84592;rank=5 scaffold_117 . CDS 88121 88707 . - 0 ID=Phyra84592;Parent=Phyra84592;rank=4 scaffold_117 . CDS 88759 89604 . - 0 ID=Phyra84592;Parent=Phyra84592;rank=3 scaffold_117 . CDS 89740 90035 . - 0 ID=Phyra84592;Parent=Phyra84592;rank=2 scaffold_117 . CDS 90146 90918 . - 0 ID=Phyra84592;Parent=Phyra84592;rank=1 scaffold_117 . biological_region 87074 87077 0.999 + . logic_name=eponine scaffold_117 . biological_region 87189 87194 0.999 - . logic_name=eponine scaffold_117 . biological_region 87217 87220 0.999 - . logic_name=eponine scaffold_117 . biological_region 87295 87298 0.999 + . logic_name=eponine scaffold_117 . biological_region 87330 87331 0.999 - . logic_name=eponine scaffold_117 . biological_region 87333 87336 0.999 + . logic_name=eponine scaffold_117 . biological_region 89211 89215 0.999 + . logic_name=eponine scaffold_117 . repeat_region 89283 89457 . ? . description=trf scaffold_117 . repeat_region 89288 89457 . ? . description=trf scaffold_117 . biological_region 89370 89373 0.999 + . logic_name=eponine scaffold_117 . biological_region 89435 89439 0.999 + . logic_name=eponine scaffold_117 . biological_region 90134 90135 0.999 - . logic_name=eponine scaffold_117 . biological_region 90265 90270 0.999 - . logic_name=eponine scaffold_117 . repeat_region 91482 91511 . ? . description=trf scaffold_117 . repeat_region 95850 95910 . ? . description=dust scaffold_117 . repeat_region 95972 96430 . ? . description=dust scaffold_117 . exon 86943 87991 . - . ID=Phyra84592.5;Parent=Phyra84592;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_117 . exon 88121 88707 . - . ID=Phyra84592.4;Parent=Phyra84592;constitutive=1;ensembl_phase=1;rank=4 scaffold_117 . exon 88759 89604 . - . ID=Phyra84592.3;Parent=Phyra84592;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_117 . exon 89740 90035 . - . ID=Phyra84592.2;Parent=Phyra84592;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_117 . exon 90146 90918 . - . ID=Phyra84592.1;Parent=Phyra84592;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_117 . repeat_region 97428 120874 . ? . description=dust scaffold_117 . repeat_region 122109 122327 . ? . description=trf scaffold_117 . repeat_region 122520 122563 . ? . description=trf scaffold_117 . repeat_region 123787 123835 . ? . description=trf scaffold_117 . repeat_region 123893 123979 . ? . description=trf scaffold_117 ensembl tRNA_gene 121606 121678 . + . ID=EPrPRAG00000000087;biotype=tRNA;description=tRNA-Lys for anticodon UUU [Source:TRNASCAN_SE%3BAcc:tRNA-Lys];external_name=tRNA-Lys;logic_name=ncrna_eg scaffold_117 ensembl transcript 121606 121678 . + . ID=EPrPRAT00000000087;Parent=EPrPRAG00000000087;biotype=tRNA;logic_name=ncrna_eg scaffold_117 . exon 121606 121678 . + . ID=EPrPRAE00000000087;Parent=EPrPRAT00000000087;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_117 . repeat_region 127204 127212 . ? . description=dust scaffold_117 . repeat_region 130623 132965 . ? . description=dust scaffold_117 ensembl protein_coding_gene 127959 128504 . - . ID=Phyra84593;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_117000018;logic_name=jgi_phyra1 scaffold_117 ensembl transcript 127959 128504 . - . ID=Phyra84593;Parent=Phyra84593;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_117 . CDS 127959 128504 . - 0 ID=Phyra84593;Parent=Phyra84593;rank=1 scaffold_117 . exon 127959 128504 . - . ID=Phyra84593.1;Parent=Phyra84593;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_115 1 137030 scaffold_115 . biological_region 324 324 0.999 + . logic_name=eponine scaffold_115 . repeat_region 1694 2935 . ? . description=dust scaffold_115 . repeat_region 3441 3543 . + . description=LSU-rRNA_Hca scaffold_115 . repeat_region 3817 3850 . ? . description=trf scaffold_115 . biological_region 3904 3905 0.999 - . logic_name=eponine scaffold_115 . repeat_region 4172 21783 . ? . description=dust scaffold_115 ensembl protein_coding_gene 3537 3716 . + . ID=Phyra40182;biotype=protein_coding;external_name=gwEuk.115.1.1;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 3537 3716 . + . ID=Phyra40182;Parent=Phyra40182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 3537 3716 . + 0 ID=Phyra40182;Parent=Phyra40182;rank=1 scaffold_115 . exon 3537 3716 . + . ID=Phyra40182.1;Parent=Phyra40182;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 4 1536 . - . ID=Phyra84504;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000001;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 4 1536 . - . ID=Phyra84504;Parent=Phyra84504;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 4 1536 . - 0 ID=Phyra84504;Parent=Phyra84504;rank=1 scaffold_115 . exon 4 1536 . - . ID=Phyra84504.1;Parent=Phyra84504;constitutive=1;rank=1 scaffold_115 . repeat_region 4172 21783 . ? . description=dust scaffold_115 . biological_region 21846 21846 0.999 - . logic_name=eponine scaffold_115 . biological_region 22306 22307 0.999 - . logic_name=eponine scaffold_115 . repeat_region 23078 23085 . ? . description=dust scaffold_115 . biological_region 27853 27854 0.999 + . logic_name=eponine scaffold_115 . biological_region 28421 28424 0.999 + . logic_name=eponine scaffold_115 . biological_region 28460 28464 0.999 + . logic_name=eponine scaffold_115 ensembl protein_coding_gene 22174 22998 . - . ID=Phyra84506;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000003;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 22174 22998 . - . ID=Phyra84506;Parent=Phyra84506;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 22174 22434 . - 0 ID=Phyra84506;Parent=Phyra84506;rank=3 scaffold_115 . exon 22174 22434 . - . ID=Phyra84506.3;Parent=Phyra84506;constitutive=1;rank=3 scaffold_115 . CDS 22573 22685 . - 0 ID=Phyra84506;Parent=Phyra84506;rank=2 scaffold_115 . exon 22573 22685 . - . ID=Phyra84506.2;Parent=Phyra84506;constitutive=1;ensembl_phase=1;rank=2 scaffold_115 . CDS 22755 22998 . - 0 ID=Phyra84506;Parent=Phyra84506;rank=1 scaffold_115 . exon 22755 22998 . - . ID=Phyra84506.1;Parent=Phyra84506;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_115 ensembl protein_coding_gene 23434 25590 . + . ID=Phyra84507;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000004;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 23434 25590 . + . ID=Phyra84507;Parent=Phyra84507;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 23434 25590 . + 0 ID=Phyra84507;Parent=Phyra84507;rank=1 scaffold_115 . exon 23434 25590 . + . ID=Phyra84507.1;Parent=Phyra84507;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 25828 29341 . + . ID=Phyra84508;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000005;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 25828 29341 . + . ID=Phyra84508;Parent=Phyra84508;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 25828 26847 . + 0 ID=Phyra84508;Parent=Phyra84508;rank=1 scaffold_115 . exon 25828 26847 . + . ID=Phyra84508.1;Parent=Phyra84508;constitutive=1;rank=1 scaffold_115 . CDS 27035 29341 . + 0 ID=Phyra84508;Parent=Phyra84508;rank=2 scaffold_115 . exon 27035 29341 . + . ID=Phyra84508.2;Parent=Phyra84508;constitutive=1;rank=2 scaffold_115 . repeat_region 31496 31549 . ? . description=trf scaffold_115 . repeat_region 31502 31550 . ? . description=trf scaffold_115 . repeat_region 31513 31550 . ? . description=trf scaffold_115 . repeat_region 31551 31572 . ? . description=trf scaffold_115 ensembl protein_coding_gene 32634 33185 . + . ID=Phyra84509;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000006;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 32634 33185 . + . ID=Phyra84509;Parent=Phyra84509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 32634 32874 . + 0 ID=Phyra84509;Parent=Phyra84509;rank=1 scaffold_115 . exon 32634 32874 . + . ID=Phyra84509.1;Parent=Phyra84509;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_115 . CDS 33106 33185 . + 0 ID=Phyra84509;Parent=Phyra84509;rank=2 scaffold_115 . exon 33106 33185 . + . ID=Phyra84509.2;Parent=Phyra84509;constitutive=1;ensembl_phase=1;rank=2 scaffold_115 ensembl protein_coding_gene 38749 41061 . + . ID=Phyra84510;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000007;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 38749 41061 . + . ID=Phyra84510;Parent=Phyra84510;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 38749 41061 . + 0 ID=Phyra84510;Parent=Phyra84510;rank=1 scaffold_115 . exon 38749 41061 . + . ID=Phyra84510.1;Parent=Phyra84510;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 46511 47398 . - . ID=Phyra72243;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_115000001;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 46511 47398 . - . ID=Phyra72243;Parent=Phyra72243;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 46511 47398 . - 0 ID=Phyra72243;Parent=Phyra72243;rank=1 scaffold_115 . exon 46511 47398 . - . ID=Phyra72243.1;Parent=Phyra72243;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 41377 46365 . + . ID=Phyra84511;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000008;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 41377 46365 . + . ID=Phyra84511;Parent=Phyra84511;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 41377 43709 . + 0 ID=Phyra84511;Parent=Phyra84511;rank=1 scaffold_115 . exon 41377 43709 . + . ID=Phyra84511.1;Parent=Phyra84511;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_115 . CDS 44120 46052 . + 0 ID=Phyra84511;Parent=Phyra84511;rank=2 scaffold_115 . exon 44120 46052 . + . ID=Phyra84511.2;Parent=Phyra84511;constitutive=1;ensembl_phase=2;rank=2 scaffold_115 . CDS 46075 46365 . + 0 ID=Phyra84511;Parent=Phyra84511;rank=3 scaffold_115 . exon 46075 46365 . + . ID=Phyra84511.3;Parent=Phyra84511;constitutive=1;rank=3 scaffold_115 ensembl protein_coding_gene 48560 50136 . + . ID=Phyra84513;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000010;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 48560 50136 . + . ID=Phyra84513;Parent=Phyra84513;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 48560 48607 . + 0 ID=Phyra84513;Parent=Phyra84513;rank=1 scaffold_115 . exon 48560 48607 . + . ID=Phyra84513.1;Parent=Phyra84513;constitutive=1;rank=1 scaffold_115 . CDS 48682 50136 . + 0 ID=Phyra84513;Parent=Phyra84513;rank=2 scaffold_115 . exon 48682 50136 . + . ID=Phyra84513.2;Parent=Phyra84513;constitutive=1;rank=2 scaffold_115 . biological_region 49835 49836 0.999 + . logic_name=eponine scaffold_115 . repeat_region 50624 50631 . ? . description=dust scaffold_115 . biological_region 53537 53542 0.999 - . logic_name=eponine scaffold_115 ensembl protein_coding_gene 50359 50911 . - . ID=Phyra84514;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000011;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 50359 50911 . - . ID=Phyra84514;Parent=Phyra84514;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 50359 50443 . - 0 ID=Phyra84514;Parent=Phyra84514;rank=4 scaffold_115 . exon 50359 50443 . - . ID=Phyra84514.4;Parent=Phyra84514;constitutive=1;ensembl_phase=2;rank=4 scaffold_115 . CDS 50508 50611 . - 0 ID=Phyra84514;Parent=Phyra84514;rank=3 scaffold_115 . exon 50508 50611 . - . ID=Phyra84514.3;Parent=Phyra84514;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_115 . CDS 50697 50752 . - 0 ID=Phyra84514;Parent=Phyra84514;rank=2 scaffold_115 . exon 50697 50752 . - . ID=Phyra84514.2;Parent=Phyra84514;constitutive=1;ensembl_phase=1;rank=2 scaffold_115 . CDS 50836 50911 . - 0 ID=Phyra84514;Parent=Phyra84514;rank=1 scaffold_115 . exon 50836 50911 . - . ID=Phyra84514.1;Parent=Phyra84514;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_115 ensembl protein_coding_gene 51081 53793 . + . ID=Phyra84515;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000012;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 51081 53793 . + . ID=Phyra84515;Parent=Phyra84515;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 51081 51952 . + 0 ID=Phyra84515;Parent=Phyra84515;rank=1 scaffold_115 . exon 51081 51952 . + . ID=Phyra84515.1;Parent=Phyra84515;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_115 . CDS 52139 52169 . + 0 ID=Phyra84515;Parent=Phyra84515;rank=2 scaffold_115 . exon 52139 52169 . + . ID=Phyra84515.2;Parent=Phyra84515;constitutive=1;ensembl_phase=2;rank=2 scaffold_115 . CDS 52200 52643 . + 0 ID=Phyra84515;Parent=Phyra84515;rank=3 scaffold_115 . exon 52200 52643 . + . ID=Phyra84515.3;Parent=Phyra84515;constitutive=1;rank=3 scaffold_115 . CDS 52935 53049 . + 0 ID=Phyra84515;Parent=Phyra84515;rank=4 scaffold_115 . exon 52935 53049 . + . ID=Phyra84515.4;Parent=Phyra84515;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_115 . CDS 53237 53793 . + 0 ID=Phyra84515;Parent=Phyra84515;rank=5 scaffold_115 . exon 53237 53793 . + . ID=Phyra84515.5;Parent=Phyra84515;constitutive=1;ensembl_phase=1;rank=5 scaffold_115 ensembl protein_coding_gene 58145 59632 . + . ID=Phyra84516;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000013;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 58145 59632 . + . ID=Phyra84516;Parent=Phyra84516;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 58145 59632 . + 0 ID=Phyra84516;Parent=Phyra84516;rank=1 scaffold_115 . exon 58145 59632 . + . ID=Phyra84516.1;Parent=Phyra84516;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 61206 61964 . - . ID=Phyra72244;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_115000002;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 61206 61964 . - . ID=Phyra72244;Parent=Phyra72244;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 61206 61964 . - 0 ID=Phyra72244;Parent=Phyra72244;rank=1 scaffold_115 . exon 61206 61964 . - . ID=Phyra72244.1;Parent=Phyra72244;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 59742 60083 . - . ID=Phyra84517;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000014;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 59742 60083 . - . ID=Phyra84517;Parent=Phyra84517;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 59742 60083 . - 0 ID=Phyra84517;Parent=Phyra84517;rank=1 scaffold_115 . exon 59742 60083 . - . ID=Phyra84517.1;Parent=Phyra84517;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 62755 68051 . - . ID=Phyra84519;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000016;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 62755 68051 . - . ID=Phyra84519;Parent=Phyra84519;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 62755 62880 . - 0 ID=Phyra84519;Parent=Phyra84519;rank=5 scaffold_115 . exon 62755 62880 . - . ID=Phyra84519.5;Parent=Phyra84519;constitutive=1;rank=5 scaffold_115 . CDS 62902 63112 . - 0 ID=Phyra84519;Parent=Phyra84519;rank=4 scaffold_115 . exon 62902 63112 . - . ID=Phyra84519.4;Parent=Phyra84519;constitutive=1;ensembl_phase=2;rank=4 scaffold_115 . CDS 63283 63447 . - 0 ID=Phyra84519;Parent=Phyra84519;rank=3 scaffold_115 . exon 63283 63447 . - . ID=Phyra84519.3;Parent=Phyra84519;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_115 . CDS 63610 65972 . - 0 ID=Phyra84519;Parent=Phyra84519;rank=2 scaffold_115 . exon 63610 65972 . - . ID=Phyra84519.2;Parent=Phyra84519;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_115 . CDS 66063 68051 . - 0 ID=Phyra84519;Parent=Phyra84519;rank=1 scaffold_115 . exon 66063 68051 . - . ID=Phyra84519.1;Parent=Phyra84519;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 68327 69151 . + . ID=Phyra84520;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000017;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 68327 69151 . + . ID=Phyra84520;Parent=Phyra84520;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 68327 68458 . + 0 ID=Phyra84520;Parent=Phyra84520;rank=1 scaffold_115 . exon 68327 68458 . + . ID=Phyra84520.1;Parent=Phyra84520;constitutive=1;rank=1 scaffold_115 . CDS 68531 69151 . + 0 ID=Phyra84520;Parent=Phyra84520;rank=2 scaffold_115 . biological_region 68879 68879 0.999 - . logic_name=eponine scaffold_115 . biological_region 70288 70292 0.999 - . logic_name=eponine scaffold_115 . biological_region 70346 70348 0.999 + . logic_name=eponine scaffold_115 . biological_region 72027 72034 0.999 - . logic_name=eponine scaffold_115 . repeat_region 74710 74763 . ? . description=trf scaffold_115 . biological_region 75846 75853 0.999 + . logic_name=eponine scaffold_115 ensembl protein_coding_gene 69697 70830 . + . ID=Phyra72245;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_115000003;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 69697 70830 . + . ID=Phyra72245;Parent=Phyra72245;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 69697 70830 . + 0 ID=Phyra72245;Parent=Phyra72245;rank=1 scaffold_115 . exon 69697 70830 . + . ID=Phyra72245.1;Parent=Phyra72245;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 77249 78013 . + . ID=Phyra72246;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_115000004;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 77249 78013 . + . ID=Phyra72246;Parent=Phyra72246;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 77249 78013 . + 0 ID=Phyra72246;Parent=Phyra72246;rank=1 scaffold_115 . exon 77249 78013 . + . ID=Phyra72246.1;Parent=Phyra72246;constitutive=1;rank=1 scaffold_115 . exon 68531 69151 . + . ID=Phyra84520.2;Parent=Phyra84520;constitutive=1;rank=2 scaffold_115 ensembl protein_coding_gene 71818 73284 . + . ID=Phyra84522;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000019;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 71818 73284 . + . ID=Phyra84522;Parent=Phyra84522;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 71818 73284 . + 0 ID=Phyra84522;Parent=Phyra84522;rank=1 scaffold_115 . exon 71818 73284 . + . ID=Phyra84522.1;Parent=Phyra84522;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 74466 76061 . - . ID=Phyra84523;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000020;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 74466 76061 . - . ID=Phyra84523;Parent=Phyra84523;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 74466 76061 . - 0 ID=Phyra84523;Parent=Phyra84523;rank=1 scaffold_115 . exon 74466 76061 . - . ID=Phyra84523.1;Parent=Phyra84523;constitutive=1;rank=1 scaffold_115 . repeat_region 78691 78733 . ? . description=dust scaffold_115 . repeat_region 80155 80209 . ? . description=dust scaffold_115 . repeat_region 80694 82898 . ? . description=dust scaffold_115 . repeat_region 84523 99959 . ? . description=dust scaffold_115 ensembl protein_coding_gene 78733 79552 . + . ID=Phyra84525;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000022;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 78733 79552 . + . ID=Phyra84525;Parent=Phyra84525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 78733 78864 . + 0 ID=Phyra84525;Parent=Phyra84525;rank=1 scaffold_115 . exon 78733 78864 . + . ID=Phyra84525.1;Parent=Phyra84525;constitutive=1;rank=1 scaffold_115 . CDS 78953 79552 . + 0 ID=Phyra84525;Parent=Phyra84525;rank=2 scaffold_115 . exon 78953 79552 . + . ID=Phyra84525.2;Parent=Phyra84525;constitutive=1;rank=2 scaffold_115 ensembl protein_coding_gene 79931 80169 . - . ID=Phyra96873;biotype=protein_coding;external_name=C_scaffold_115000005;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 79931 80169 . - . ID=Phyra96873;Parent=Phyra96873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 79931 79975 . - 0 ID=Phyra96873;Parent=Phyra96873;rank=2 scaffold_115 . exon 79931 79975 . - . ID=Phyra96873.2;Parent=Phyra96873;constitutive=1;rank=2 scaffold_115 . CDS 80038 80169 . - 0 ID=Phyra96873;Parent=Phyra96873;rank=1 scaffold_115 . exon 80038 80169 . - . ID=Phyra96873.1;Parent=Phyra96873;constitutive=1;rank=1 scaffold_115 . repeat_region 84523 99959 . ? . description=dust scaffold_115 . repeat_region 100411 100431 . ? . description=trf scaffold_115 . repeat_region 100411 100431 . ? . description=dust scaffold_115 . repeat_region 100587 100619 . ? . description=trf scaffold_115 . repeat_region 100627 100672 . ? . description=trf scaffold_115 . repeat_region 100670 100720 . ? . description=trf scaffold_115 . repeat_region 100730 100780 . ? . description=trf scaffold_115 . biological_region 103148 103152 0.999 - . logic_name=eponine scaffold_115 . biological_region 104982 104987 0.999 + . logic_name=eponine scaffold_115 . biological_region 104991 104993 0.999 - . logic_name=eponine scaffold_115 . biological_region 105311 105313 0.999 + . logic_name=eponine scaffold_115 . repeat_region 105916 105954 . ? . description=trf scaffold_115 . repeat_region 105992 106062 . ? . description=trf scaffold_115 . repeat_region 106073 106108 . ? . description=trf scaffold_115 . repeat_region 106136 106252 . ? . description=trf scaffold_115 . repeat_region 106178 106200 . ? . description=trf scaffold_115 . repeat_region 106298 106353 . ? . description=trf scaffold_115 . repeat_region 106408 106446 . ? . description=trf scaffold_115 . repeat_region 106602 106618 . ? . description=dust scaffold_115 . repeat_region 107308 107443 . ? . description=trf scaffold_115 ensembl protein_coding_gene 103031 104161 . + . ID=Phyra72247;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_115000005;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 103031 104161 . + . ID=Phyra72247;Parent=Phyra72247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 103031 104161 . + 0 ID=Phyra72247;Parent=Phyra72247;rank=1 scaffold_115 . exon 103031 104161 . + . ID=Phyra72247.1;Parent=Phyra72247;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 105751 106587 . - . ID=Phyra72248;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_115000006;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 105751 106587 . - . ID=Phyra72248;Parent=Phyra72248;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 105751 106587 . - 0 ID=Phyra72248;Parent=Phyra72248;rank=1 scaffold_115 . exon 105751 106587 . - . ID=Phyra72248.1;Parent=Phyra72248;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 100446 100928 . + . ID=Phyra84526;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000023;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 100446 100928 . + . ID=Phyra84526;Parent=Phyra84526;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 100446 100928 . + 0 ID=Phyra84526;Parent=Phyra84526;rank=1 scaffold_115 . exon 100446 100928 . + . ID=Phyra84526.1;Parent=Phyra84526;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 101230 102038 . - . ID=Phyra84527;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000024;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 101230 102038 . - . ID=Phyra84527;Parent=Phyra84527;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 101230 101829 . - 0 ID=Phyra84527;Parent=Phyra84527;rank=2 scaffold_115 . exon 101230 101829 . - . ID=Phyra84527.2;Parent=Phyra84527;constitutive=1;rank=2 scaffold_115 . CDS 101907 102038 . - 0 ID=Phyra84527;Parent=Phyra84527;rank=1 scaffold_115 . exon 101907 102038 . - . ID=Phyra84527.1;Parent=Phyra84527;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 104495 105427 . - . ID=Phyra84529;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000026;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 104495 105427 . - . ID=Phyra84529;Parent=Phyra84529;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 104495 105427 . - 0 ID=Phyra84529;Parent=Phyra84529;rank=1 scaffold_115 . exon 104495 105427 . - . ID=Phyra84529.1;Parent=Phyra84529;constitutive=1;rank=1 scaffold_115 . repeat_region 108729 129738 . ? . description=dust scaffold_115 . repeat_region 129825 129960 . ? . description=trf scaffold_115 . repeat_region 130937 130989 . ? . description=trf scaffold_115 . repeat_region 131145 131183 . ? . description=trf scaffold_115 . repeat_region 131234 131296 . ? . description=trf scaffold_115 . repeat_region 132987 133018 . ? . description=trf scaffold_115 . repeat_region 136149 136266 . ? . description=trf scaffold_115 . repeat_region 136968 136992 . ? . description=trf scaffold_115 ensembl protein_coding_gene 132938 133756 . + . ID=Phyra84531;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_115000028;logic_name=jgi_phyra1 scaffold_115 ensembl transcript 132938 133756 . + . ID=Phyra84531;Parent=Phyra84531;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_115 . CDS 132938 133010 . + 0 ID=Phyra84531;Parent=Phyra84531;rank=1 scaffold_115 . exon 132938 133010 . + . ID=Phyra84531.1;Parent=Phyra84531;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_115 . CDS 133392 133756 . + 0 ID=Phyra84531;Parent=Phyra84531;rank=2 scaffold_115 . exon 133392 133756 . + . ID=Phyra84531.2;Parent=Phyra84531;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_114 1 137664 scaffold_114 . biological_region 5059 5060 0.999 - . logic_name=eponine scaffold_114 . repeat_region 7801 7849 . ? . description=trf scaffold_114 . repeat_region 9654 9667 . ? . description=dust scaffold_114 ensembl protein_coding_gene 693 1329 . - . ID=Phyra84462;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000001;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 693 1329 . - . ID=Phyra84462;Parent=Phyra84462;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 693 1065 . - 0 ID=Phyra84462;Parent=Phyra84462;rank=2 scaffold_114 . exon 693 1065 . - . ID=Phyra84462.2;Parent=Phyra84462;constitutive=1;ensembl_phase=2;rank=2 scaffold_114 . CDS 1166 1329 . - 0 ID=Phyra84462;Parent=Phyra84462;rank=1 scaffold_114 . exon 1166 1329 . - . ID=Phyra84462.1;Parent=Phyra84462;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_114 ensembl protein_coding_gene 4736 8682 . - . ID=Phyra84464;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000003;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 4736 8682 . - . ID=Phyra84464;Parent=Phyra84464;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 4736 4762 . - 0 ID=Phyra84464;Parent=Phyra84464;rank=7 scaffold_114 . exon 4736 4762 . - . ID=Phyra84464.7;Parent=Phyra84464;constitutive=1;rank=7 scaffold_114 . CDS 4860 6031 . - 0 ID=Phyra84464;Parent=Phyra84464;rank=6 scaffold_114 . exon 4860 6031 . - . ID=Phyra84464.6;Parent=Phyra84464;constitutive=1;ensembl_phase=1;rank=6 scaffold_114 . CDS 6296 6633 . - 0 ID=Phyra84464;Parent=Phyra84464;rank=5 scaffold_114 . exon 6296 6633 . - . ID=Phyra84464.5;Parent=Phyra84464;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_114 . CDS 6734 7299 . - 0 ID=Phyra84464;Parent=Phyra84464;rank=4 scaffold_114 . exon 6734 7299 . - . ID=Phyra84464.4;Parent=Phyra84464;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_114 . CDS 7372 7552 . - 0 ID=Phyra84464;Parent=Phyra84464;rank=3 scaffold_114 . exon 7372 7552 . - . ID=Phyra84464.3;Parent=Phyra84464;constitutive=1;ensembl_phase=2;rank=3 scaffold_114 . CDS 7802 8523 . - 0 ID=Phyra84464;Parent=Phyra84464;rank=2 scaffold_114 . exon 7802 8523 . - . ID=Phyra84464.2;Parent=Phyra84464;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_114 . CDS 8602 8682 . - 0 ID=Phyra84464;Parent=Phyra84464;rank=1 scaffold_114 . exon 8602 8682 . - . ID=Phyra84464.1;Parent=Phyra84464;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 1464 2183 . + . ID=Phyra96856;biotype=protein_coding;external_name=C_scaffold_114000001;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 1464 2183 . + . ID=Phyra96856;Parent=Phyra96856;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 1464 1952 . + 0 ID=Phyra96856;Parent=Phyra96856;rank=1 scaffold_114 . exon 1464 1952 . + . ID=Phyra96856.1;Parent=Phyra96856;constitutive=1;rank=1 scaffold_114 . CDS 2145 2183 . + 0 ID=Phyra96856;Parent=Phyra96856;rank=2 scaffold_114 . exon 2145 2183 . + . ID=Phyra96856.2;Parent=Phyra96856;constitutive=1;rank=2 scaffold_114 ensembl protein_coding_gene 10916 12547 . + . ID=Phyra84465;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000004;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 10916 12547 . + . ID=Phyra84465;Parent=Phyra84465;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 10916 12547 . + 0 ID=Phyra84465;Parent=Phyra84465;rank=1 scaffold_114 . exon 10916 12547 . + . ID=Phyra84465.1;Parent=Phyra84465;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 13839 15416 . + . ID=Phyra84466;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000005;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 13839 15416 . + . ID=Phyra84466;Parent=Phyra84466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 13839 15416 . + 0 ID=Phyra84466;Parent=Phyra84466;rank=1 scaffold_114 . exon 13839 15416 . + . ID=Phyra84466.1;Parent=Phyra84466;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 15705 17410 . - . ID=Phyra84467;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000006;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 15705 17410 . - . ID=Phyra84467;Parent=Phyra84467;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 15705 16675 . - 0 ID=Phyra84467;Parent=Phyra84467;rank=2 scaffold_114 . exon 15705 16675 . - . ID=Phyra84467.2;Parent=Phyra84467;constitutive=1;ensembl_phase=1;rank=2 scaffold_114 . CDS 16729 17410 . - 0 ID=Phyra84467;Parent=Phyra84467;rank=1 scaffold_114 . exon 16729 17410 . - . ID=Phyra84467.1;Parent=Phyra84467;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_114 . repeat_region 17445 30164 . ? . description=dust scaffold_114 . biological_region 34006 34012 0.999 - . logic_name=eponine scaffold_114 . biological_region 35378 35381 0.999 + . logic_name=eponine scaffold_114 . biological_region 35430 35434 0.999 + . logic_name=eponine scaffold_114 . biological_region 35458 35462 0.999 + . logic_name=eponine scaffold_114 . biological_region 35478 35480 0.999 - . logic_name=eponine scaffold_114 . biological_region 35514 35518 0.999 + . logic_name=eponine scaffold_114 . biological_region 35557 35563 0.999 - . logic_name=eponine scaffold_114 . biological_region 35616 35617 0.999 + . logic_name=eponine scaffold_114 . biological_region 35631 35632 0.999 - . logic_name=eponine scaffold_114 . biological_region 36338 36345 0.999 - . logic_name=eponine scaffold_114 . biological_region 36845 36847 0.999 - . logic_name=eponine scaffold_114 . biological_region 37742 37745 0.999 + . logic_name=eponine scaffold_114 . biological_region 38219 38225 0.999 - . logic_name=eponine scaffold_114 ensembl protein_coding_gene 31967 33098 . + . ID=Phyra40072;biotype=protein_coding;external_name=gwEuk.114.2.1;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 31967 33098 . + . ID=Phyra40072;Parent=Phyra40072;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 31967 32753 . + 0 ID=Phyra40072;Parent=Phyra40072;rank=1 scaffold_114 . exon 31967 32753 . + . ID=Phyra40072.1;Parent=Phyra40072;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_114 . CDS 32817 32881 . + 0 ID=Phyra40072;Parent=Phyra40072;rank=2 scaffold_114 . exon 32817 32881 . + . ID=Phyra40072.2;Parent=Phyra40072;constitutive=1;ensembl_phase=1;rank=2 scaffold_114 . CDS 32959 33003 . + 0 ID=Phyra40072;Parent=Phyra40072;rank=3 scaffold_114 . exon 32959 33003 . + . ID=Phyra40072.3;Parent=Phyra40072;constitutive=1;rank=3 scaffold_114 . CDS 33072 33098 . + 0 ID=Phyra40072;Parent=Phyra40072;rank=4 scaffold_114 . exon 33072 33098 . + . ID=Phyra40072.4;Parent=Phyra40072;constitutive=1;rank=4 scaffold_114 ensembl protein_coding_gene 36646 37965 . - . ID=Phyra40089;biotype=protein_coding;external_name=gwEuk.114.19.1;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 36646 37965 . - . ID=Phyra40089;Parent=Phyra40089;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 36646 37965 . - 0 ID=Phyra40089;Parent=Phyra40089;rank=1 scaffold_114 . exon 36646 37965 . - . ID=Phyra40089.1;Parent=Phyra40089;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 38094 39748 . - . ID=Phyra40092;biotype=protein_coding;external_name=gwEuk.114.22.1;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 38094 39748 . - . ID=Phyra40092;Parent=Phyra40092;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 38094 38448 . - 0 ID=Phyra40092;Parent=Phyra40092;rank=6 scaffold_114 . exon 38094 38448 . - . ID=Phyra40092.6;Parent=Phyra40092;constitutive=1;ensembl_phase=2;rank=6 scaffold_114 . CDS 38514 38604 . - 0 ID=Phyra40092;Parent=Phyra40092;rank=5 scaffold_114 . exon 38514 38604 . - . ID=Phyra40092.5;Parent=Phyra40092;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_114 . CDS 38671 38710 . - 0 ID=Phyra40092;Parent=Phyra40092;rank=4 scaffold_114 . exon 38671 38710 . - . ID=Phyra40092.4;Parent=Phyra40092;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_114 . CDS 38788 38921 . - 0 ID=Phyra40092;Parent=Phyra40092;rank=3 scaffold_114 . exon 38788 38921 . - . ID=Phyra40092.3;Parent=Phyra40092;constitutive=1;ensembl_phase=1;rank=3 scaffold_114 . CDS 38993 39182 . - 0 ID=Phyra40092;Parent=Phyra40092;rank=2 scaffold_114 . exon 38993 39182 . - . ID=Phyra40092.2;Parent=Phyra40092;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_114 . CDS 39260 39748 . - 0 ID=Phyra40092;Parent=Phyra40092;rank=1 scaffold_114 . exon 39260 39748 . - . ID=Phyra40092.1;Parent=Phyra40092;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 33772 34560 . - . ID=Phyra72232;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_114000001;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 33772 34560 . - . ID=Phyra72232;Parent=Phyra72232;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 33772 34321 . - 0 ID=Phyra72232;Parent=Phyra72232;rank=2 scaffold_114 . exon 33772 34321 . - . ID=Phyra72232.2;Parent=Phyra72232;constitutive=1;ensembl_phase=2;rank=2 scaffold_114 . CDS 34520 34560 . - 0 ID=Phyra72232;Parent=Phyra72232;rank=1 scaffold_114 . exon 34520 34560 . - . ID=Phyra72232.1;Parent=Phyra72232;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_114 ensembl protein_coding_gene 35328 36365 . + . ID=Phyra84470;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000009;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 35328 36365 . + . ID=Phyra84470;Parent=Phyra84470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 35328 36365 . + 0 ID=Phyra84470;Parent=Phyra84470;rank=1 scaffold_114 . exon 35328 36365 . + . ID=Phyra84470.1;Parent=Phyra84470;constitutive=1;rank=1 scaffold_114 . repeat_region 41259 41268 . ? . description=dust scaffold_114 . repeat_region 48626 48756 . + . description=Gypsy-1-LTR_PI scaffold_114 ensembl protein_coding_gene 42371 43273 . + . ID=Phyra72233;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_114000002;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 42371 43273 . + . ID=Phyra72233;Parent=Phyra72233;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 42371 43273 . + 0 ID=Phyra72233;Parent=Phyra72233;rank=1 scaffold_114 . exon 42371 43273 . + . ID=Phyra72233.1;Parent=Phyra72233;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 43986 44684 . - . ID=Phyra72234;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_114000003;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 43986 44684 . - . ID=Phyra72234;Parent=Phyra72234;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 43986 44684 . - 0 ID=Phyra72234;Parent=Phyra72234;rank=1 scaffold_114 . exon 43986 44684 . - . ID=Phyra72234.1;Parent=Phyra72234;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 45578 46447 . - . ID=Phyra84474;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000013;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 45578 46447 . - . ID=Phyra84474;Parent=Phyra84474;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 45578 46447 . - 0 ID=Phyra84474;Parent=Phyra84474;rank=1 scaffold_114 . exon 45578 46447 . - . ID=Phyra84474.1;Parent=Phyra84474;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 47366 48247 . - . ID=Phyra84475;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000014;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 47366 48247 . - . ID=Phyra84475;Parent=Phyra84475;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 47366 48247 . - 0 ID=Phyra84475;Parent=Phyra84475;rank=1 scaffold_114 . exon 47366 48247 . - . ID=Phyra84475.1;Parent=Phyra84475;constitutive=1;rank=1 scaffold_114 . repeat_region 49861 49921 . ? . description=trf scaffold_114 . biological_region 50852 50852 0.999 - . logic_name=eponine scaffold_114 . biological_region 55041 55048 0.999 + . logic_name=eponine scaffold_114 . biological_region 55152 55155 0.999 + . logic_name=eponine scaffold_114 ensembl protein_coding_gene 50260 51177 . - . ID=Phyra84476;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000015;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 50260 51177 . - . ID=Phyra84476;Parent=Phyra84476;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 50260 51177 . - 0 ID=Phyra84476;Parent=Phyra84476;rank=1 scaffold_114 . exon 50260 51177 . - . ID=Phyra84476.1;Parent=Phyra84476;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 56097 61428 . - . ID=Phyra84478;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000017;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 56097 61428 . - . ID=Phyra84478;Parent=Phyra84478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 56097 60874 . - 0 ID=Phyra84478;Parent=Phyra84478;rank=2 scaffold_114 . exon 56097 60874 . - . ID=Phyra84478.2;Parent=Phyra84478;constitutive=1;ensembl_phase=1;rank=2 scaffold_114 . CDS 60951 61428 . - 0 ID=Phyra84478;Parent=Phyra84478;rank=1 scaffold_114 ensembl protein_coding_gene 53274 55325 . - . ID=Phyra96860;biotype=protein_coding;external_name=C_scaffold_114000005;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 53274 55325 . - . ID=Phyra96860;Parent=Phyra96860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 53274 53406 . - 0 ID=Phyra96860;Parent=Phyra96860;rank=4 scaffold_114 . exon 53274 53406 . - . ID=Phyra96860.4;Parent=Phyra96860;constitutive=1;ensembl_phase=2;rank=4 scaffold_114 . CDS 53740 53805 . - 0 ID=Phyra96860;Parent=Phyra96860;rank=3 scaffold_114 . exon 53740 53805 . - . ID=Phyra96860.3;Parent=Phyra96860;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_114 . CDS 53830 54308 . - 0 ID=Phyra96860;Parent=Phyra96860;rank=2 scaffold_114 . exon 53830 54308 . - . ID=Phyra96860.2;Parent=Phyra96860;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_114 . CDS 54459 55325 . - 0 ID=Phyra96860;Parent=Phyra96860;rank=1 scaffold_114 . exon 54459 55325 . - . ID=Phyra96860.1;Parent=Phyra96860;constitutive=1;rank=1 scaffold_114 . repeat_region 67280 73000 . ? . description=dust scaffold_114 . exon 60951 61428 . - . ID=Phyra84478.1;Parent=Phyra84478;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_114 ensembl protein_coding_gene 62209 64227 . + . ID=Phyra84479;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000018;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 62209 64227 . + . ID=Phyra84479;Parent=Phyra84479;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 62209 64227 . + 0 ID=Phyra84479;Parent=Phyra84479;rank=1 scaffold_114 . exon 62209 64227 . + . ID=Phyra84479.1;Parent=Phyra84479;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 64340 66511 . - . ID=Phyra84480;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000019;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 64340 66511 . - . ID=Phyra84480;Parent=Phyra84480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 64340 66511 . - 0 ID=Phyra84480;Parent=Phyra84480;rank=1 scaffold_114 . exon 64340 66511 . - . ID=Phyra84480.1;Parent=Phyra84480;constitutive=1;rank=1 scaffold_114 . biological_region 73637 73641 0.999 - . logic_name=eponine scaffold_114 . biological_region 74788 74790 0.999 - . logic_name=eponine scaffold_114 . biological_region 77114 77116 0.999 + . logic_name=eponine scaffold_114 . biological_region 78497 78498 0.999 - . logic_name=eponine scaffold_114 ensembl protein_coding_gene 73518 77609 . + . ID=Phyra84481;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000020;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 73518 77609 . + . ID=Phyra84481;Parent=Phyra84481;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 73518 77609 . + 0 ID=Phyra84481;Parent=Phyra84481;rank=1 scaffold_114 . exon 73518 77609 . + . ID=Phyra84481.1;Parent=Phyra84481;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 77665 78623 . - . ID=Phyra84482;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000021;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 77665 78623 . - . ID=Phyra84482;Parent=Phyra84482;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 77665 78266 . - 0 ID=Phyra84482;Parent=Phyra84482;rank=2 scaffold_114 . exon 77665 78266 . - . ID=Phyra84482.2;Parent=Phyra84482;constitutive=1;ensembl_phase=1;rank=2 scaffold_114 . CDS 78341 78623 . - 0 ID=Phyra84482;Parent=Phyra84482;rank=1 scaffold_114 . exon 78341 78623 . - . ID=Phyra84482.1;Parent=Phyra84482;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_114 ensembl protein_coding_gene 80721 82817 . + . ID=Phyra84483;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000022;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 80721 82817 . + . ID=Phyra84483;Parent=Phyra84483;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 80721 82817 . + 0 ID=Phyra84483;Parent=Phyra84483;rank=1 scaffold_114 . exon 80721 82817 . + . ID=Phyra84483.1;Parent=Phyra84483;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 83095 86355 . + . ID=Phyra84484;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000023;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 83095 86355 . + . ID=Phyra84484;Parent=Phyra84484;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 83095 86004 . + 0 ID=Phyra84484;Parent=Phyra84484;rank=1 scaffold_114 . exon 83095 86004 . + . ID=Phyra84484.1;Parent=Phyra84484;constitutive=1;rank=1 scaffold_114 . CDS 86134 86355 . + 0 ID=Phyra84484;Parent=Phyra84484;rank=2 scaffold_114 . exon 86134 86355 . + . ID=Phyra84484.2;Parent=Phyra84484;constitutive=1;rank=2 scaffold_114 ensembl protein_coding_gene 86967 88028 . + . ID=Phyra84485;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000024;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 86967 88028 . + . ID=Phyra84485;Parent=Phyra84485;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 86967 88028 . + 0 ID=Phyra84485;Parent=Phyra84485;rank=1 scaffold_114 . exon 86967 88028 . + . ID=Phyra84485.1;Parent=Phyra84485;constitutive=1;rank=1 scaffold_114 . biological_region 90425 90427 0.999 - . logic_name=eponine scaffold_114 . biological_region 90482 90485 0.999 + . logic_name=eponine scaffold_114 . biological_region 92476 92479 0.999 - . logic_name=eponine scaffold_114 . biological_region 94955 94957 0.999 + . logic_name=eponine scaffold_114 . biological_region 95756 95763 0.999 + . logic_name=eponine scaffold_114 ensembl protein_coding_gene 88541 95168 . + . ID=Phyra84486;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000025;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 88541 95168 . + . ID=Phyra84486;Parent=Phyra84486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 88541 88769 . + 0 ID=Phyra84486;Parent=Phyra84486;rank=1 scaffold_114 . exon 88541 88769 . + . ID=Phyra84486.1;Parent=Phyra84486;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_114 . CDS 88828 89228 . + 0 ID=Phyra84486;Parent=Phyra84486;rank=2 scaffold_114 . exon 88828 89228 . + . ID=Phyra84486.2;Parent=Phyra84486;constitutive=1;ensembl_phase=1;rank=2 scaffold_114 . CDS 89305 89385 . + 0 ID=Phyra84486;Parent=Phyra84486;rank=3 scaffold_114 . exon 89305 89385 . + . ID=Phyra84486.3;Parent=Phyra84486;constitutive=1;rank=3 scaffold_114 . CDS 89452 91974 . + 0 ID=Phyra84486;Parent=Phyra84486;rank=4 scaffold_114 . exon 89452 91974 . + . ID=Phyra84486.4;Parent=Phyra84486;constitutive=1;rank=4 scaffold_114 . CDS 92018 92066 . + 0 ID=Phyra84486;Parent=Phyra84486;rank=5 scaffold_114 . exon 92018 92066 . + . ID=Phyra84486.5;Parent=Phyra84486;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_114 . CDS 92199 92722 . + 0 ID=Phyra84486;Parent=Phyra84486;rank=6 scaffold_114 . exon 92199 92722 . + . ID=Phyra84486.6;Parent=Phyra84486;constitutive=1;ensembl_phase=1;rank=6 scaffold_114 . CDS 92783 92858 . + 0 ID=Phyra84486;Parent=Phyra84486;rank=7 scaffold_114 . exon 92783 92858 . + . ID=Phyra84486.7;Parent=Phyra84486;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_114 . CDS 92920 95168 . + 0 ID=Phyra84486;Parent=Phyra84486;rank=8 scaffold_114 . exon 92920 95168 . + . ID=Phyra84486.8;Parent=Phyra84486;constitutive=1;ensembl_phase=1;rank=8 scaffold_114 ensembl protein_coding_gene 95919 98399 . + . ID=Phyra84487;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000026;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 95919 98399 . + . ID=Phyra84487;Parent=Phyra84487;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 95919 96484 . + 0 ID=Phyra84487;Parent=Phyra84487;rank=1 scaffold_114 . exon 95919 96484 . + . ID=Phyra84487.1;Parent=Phyra84487;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_114 . CDS 96545 96780 . + 0 ID=Phyra84487;Parent=Phyra84487;rank=2 scaffold_114 . exon 96545 96780 . + . ID=Phyra84487.2;Parent=Phyra84487;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_114 . CDS 96856 96985 . + 0 ID=Phyra84487;Parent=Phyra84487;rank=3 scaffold_114 . exon 96856 96985 . + . ID=Phyra84487.3;Parent=Phyra84487;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_114 . CDS 97056 97242 . + 0 ID=Phyra84487;Parent=Phyra84487;rank=4 scaffold_114 . exon 97056 97242 . + . ID=Phyra84487.4;Parent=Phyra84487;constitutive=1;ensembl_phase=2;rank=4 scaffold_114 . CDS 97335 98399 . + 0 ID=Phyra84487;Parent=Phyra84487;rank=5 scaffold_114 . exon 97335 98399 . + . ID=Phyra84487.5;Parent=Phyra84487;constitutive=1;rank=5 scaffold_114 ensembl pseudogene 98642 100710 . - . ID=Phyra40131;biotype=pseudogene;external_name=gwEuk.114.61.1;logic_name=jgi_phyra1 scaffold_114 ensembl pseudogene 98642 100710 . - . ID=Phyra40131;Parent=Phyra40131;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_114 . exon 98642 100710 . - . ID=Phyra40131.1;Parent=Phyra40131;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_114 ensembl protein_coding_gene 104901 105626 . - . ID=Phyra72235;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_114000004;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 104901 105626 . - . ID=Phyra72235;Parent=Phyra72235;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 104901 105626 . - 0 ID=Phyra72235;Parent=Phyra72235;rank=1 scaffold_114 . exon 104901 105626 . - . ID=Phyra72235.1;Parent=Phyra72235;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 106106 106930 . - . ID=Phyra72236;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_114000005;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 106106 106930 . - . ID=Phyra72236;Parent=Phyra72236;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 106106 106930 . - 0 ID=Phyra72236;Parent=Phyra72236;rank=1 scaffold_114 . exon 106106 106930 . - . ID=Phyra72236.1;Parent=Phyra72236;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 102096 103246 . - . ID=Phyra84489;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000028;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 102096 103246 . - . ID=Phyra84489;Parent=Phyra84489;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 102096 102232 . - 0 ID=Phyra84489;Parent=Phyra84489;rank=6 scaffold_114 . exon 102096 102232 . - . ID=Phyra84489.6;Parent=Phyra84489;constitutive=1;ensembl_phase=1;rank=6 scaffold_114 . CDS 102316 102343 . - 0 ID=Phyra84489;Parent=Phyra84489;rank=5 scaffold_114 . exon 102316 102343 . - . ID=Phyra84489.5;Parent=Phyra84489;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_114 . CDS 102428 102616 . - 0 ID=Phyra84489;Parent=Phyra84489;rank=4 scaffold_114 . exon 102428 102616 . - . ID=Phyra84489.4;Parent=Phyra84489;constitutive=1;rank=4 scaffold_114 . CDS 102785 102859 . - 0 ID=Phyra84489;Parent=Phyra84489;rank=3 scaffold_114 . exon 102785 102859 . - . ID=Phyra84489.3;Parent=Phyra84489;constitutive=1;rank=3 scaffold_114 . CDS 102948 103108 . - 0 ID=Phyra84489;Parent=Phyra84489;rank=2 scaffold_114 . exon 102948 103108 . - . ID=Phyra84489.2;Parent=Phyra84489;constitutive=1;ensembl_phase=1;rank=2 scaffold_114 . CDS 103195 103246 . - 0 ID=Phyra84489;Parent=Phyra84489;rank=1 scaffold_114 . exon 103195 103246 . - . ID=Phyra84489.1;Parent=Phyra84489;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_114 ensembl protein_coding_gene 103809 104699 . - . ID=Phyra84490;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000029;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 103809 104699 . - . ID=Phyra84490;Parent=Phyra84490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 103809 103910 . - 0 ID=Phyra84490;Parent=Phyra84490;rank=3 scaffold_114 . exon 103809 103910 . - . ID=Phyra84490.3;Parent=Phyra84490;constitutive=1;rank=3 scaffold_114 . CDS 103961 104221 . - 0 ID=Phyra84490;Parent=Phyra84490;rank=2 scaffold_114 . exon 103961 104221 . - . ID=Phyra84490.2;Parent=Phyra84490;constitutive=1;rank=2 scaffold_114 . CDS 104292 104699 . - 0 ID=Phyra84490;Parent=Phyra84490;rank=1 scaffold_114 . exon 104292 104699 . - . ID=Phyra84490.1;Parent=Phyra84490;constitutive=1;rank=1 scaffold_114 . biological_region 108560 108564 0.999 + . logic_name=eponine scaffold_114 . biological_region 109524 109526 0.999 + . logic_name=eponine scaffold_114 . biological_region 109592 109594 0.999 + . logic_name=eponine scaffold_114 . biological_region 109604 109604 0.999 - . logic_name=eponine scaffold_114 . repeat_region 111766 111775 . ? . description=dust scaffold_114 . biological_region 111995 112000 0.999 + . logic_name=eponine scaffold_114 . biological_region 112072 112074 0.999 + . logic_name=eponine scaffold_114 . biological_region 112237 112242 0.999 - . logic_name=eponine scaffold_114 . biological_region 113254 113259 0.999 + . logic_name=eponine scaffold_114 . biological_region 114454 114456 0.999 + . logic_name=eponine scaffold_114 . biological_region 114480 114485 0.999 + . logic_name=eponine scaffold_114 . biological_region 114488 114489 0.999 - . logic_name=eponine scaffold_114 . biological_region 116947 116953 0.999 + . logic_name=eponine scaffold_114 . biological_region 117595 117597 0.999 + . logic_name=eponine scaffold_114 . biological_region 117786 117792 0.999 + . logic_name=eponine scaffold_114 ensembl protein_coding_gene 108512 109339 . + . ID=Phyra72237;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_114000006;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 108512 109339 . + . ID=Phyra72237;Parent=Phyra72237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 108512 109339 . + 0 ID=Phyra72237;Parent=Phyra72237;rank=1 scaffold_114 . exon 108512 109339 . + . ID=Phyra72237.1;Parent=Phyra72237;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 109488 111293 . + . ID=Phyra72238;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_114000007;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 109488 111293 . + . ID=Phyra72238;Parent=Phyra72238;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 109488 111293 . + 0 ID=Phyra72238;Parent=Phyra72238;rank=1 scaffold_114 . exon 109488 111293 . + . ID=Phyra72238.1;Parent=Phyra72238;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 114872 115930 . + . ID=Phyra72240;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_114000009;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 114872 115930 . + . ID=Phyra72240;Parent=Phyra72240;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 114872 115088 . + 0 ID=Phyra72240;Parent=Phyra72240;rank=1 scaffold_114 . exon 114872 115088 . + . ID=Phyra72240.1;Parent=Phyra72240;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_114 . CDS 115163 115492 . + 0 ID=Phyra72240;Parent=Phyra72240;rank=2 scaffold_114 . exon 115163 115492 . + . ID=Phyra72240.2;Parent=Phyra72240;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_114 . CDS 115554 115930 . + 0 ID=Phyra72240;Parent=Phyra72240;rank=3 scaffold_114 . exon 115554 115930 . + . ID=Phyra72240.3;Parent=Phyra72240;constitutive=1;ensembl_phase=1;rank=3 scaffold_114 ensembl protein_coding_gene 116052 119747 . - . ID=Phyra84498;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000037;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 116052 119747 . - . ID=Phyra84498;Parent=Phyra84498;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 116052 116348 . - 0 ID=Phyra84498;Parent=Phyra84498;rank=2 scaffold_114 . exon 116052 116348 . - . ID=Phyra84498.2;Parent=Phyra84498;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_114 . CDS 116416 119747 . - 0 ID=Phyra84498;Parent=Phyra84498;rank=1 scaffold_114 . exon 116416 119747 . - . ID=Phyra84498.1;Parent=Phyra84498;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_114 ensembl protein_coding_gene 111972 114752 . + . ID=Phyra96867;biotype=protein_coding;external_name=C_scaffold_114000012;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 111972 114752 . + . ID=Phyra96867;Parent=Phyra96867;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 111972 113081 . + 0 ID=Phyra96867;Parent=Phyra96867;rank=1 scaffold_114 . exon 111972 113081 . + . ID=Phyra96867.1;Parent=Phyra96867;constitutive=1;rank=1 scaffold_114 . CDS 113352 113591 . + 0 ID=Phyra96867;Parent=Phyra96867;rank=2 scaffold_114 . exon 113352 113591 . + . ID=Phyra96867.2;Parent=Phyra96867;constitutive=1;rank=2 scaffold_114 . CDS 113637 114036 . + 0 ID=Phyra96867;Parent=Phyra96867;rank=3 scaffold_114 . exon 113637 114036 . + . ID=Phyra96867.3;Parent=Phyra96867;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_114 . CDS 114082 114511 . + 0 ID=Phyra96867;Parent=Phyra96867;rank=4 scaffold_114 . exon 114082 114511 . + . ID=Phyra96867.4;Parent=Phyra96867;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_114 . CDS 114560 114752 . + 0 ID=Phyra96867;Parent=Phyra96867;rank=5 scaffold_114 . exon 114560 114752 . + . ID=Phyra96867.5;Parent=Phyra96867;constitutive=1;ensembl_phase=2;rank=5 scaffold_114 ensembl protein_coding_gene 120066 121532 . - . ID=Phyra72241;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_114000010;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 120066 121532 . - . ID=Phyra72241;Parent=Phyra72241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 120066 121532 . - 0 ID=Phyra72241;Parent=Phyra72241;rank=1 scaffold_114 . exon 120066 121532 . - . ID=Phyra72241.1;Parent=Phyra72241;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 122238 123749 . - . ID=Phyra84500;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000039;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 122238 123749 . - . ID=Phyra84500;Parent=Phyra84500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 122238 123749 . - 0 ID=Phyra84500;Parent=Phyra84500;rank=1 scaffold_114 . exon 122238 123749 . - . ID=Phyra84500.1;Parent=Phyra84500;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 127595 129966 . + . ID=Phyra84501;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000040;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 127595 129966 . + . ID=Phyra84501;Parent=Phyra84501;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 127595 127631 . + 0 ID=Phyra84501;Parent=Phyra84501;rank=1 scaffold_114 . exon 127595 127631 . + . ID=Phyra84501.1;Parent=Phyra84501;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_114 . CDS 127705 127769 . + 0 ID=Phyra84501;Parent=Phyra84501;rank=2 scaffold_114 . exon 127705 127769 . + . ID=Phyra84501.2;Parent=Phyra84501;constitutive=1;ensembl_phase=1;rank=2 scaffold_114 . CDS 128696 128977 . + 0 ID=Phyra84501;Parent=Phyra84501;rank=3 scaffold_114 . CDS 129087 129278 . + 0 ID=Phyra84501;Parent=Phyra84501;rank=4 scaffold_114 . CDS 129352 129966 . + 0 ID=Phyra84501;Parent=Phyra84501;rank=5 scaffold_114 . repeat_region 127990 128004 . ? . description=dust scaffold_114 . biological_region 128765 128770 0.999 + . logic_name=eponine scaffold_114 . repeat_region 128979 129037 . ? . description=dust scaffold_114 . repeat_region 128984 129040 . ? . description=trf scaffold_114 . repeat_region 130548 130555 . ? . description=dust scaffold_114 . biological_region 132163 132163 0.999 - . logic_name=eponine scaffold_114 ensembl protein_coding_gene 135453 136919 . + . ID=Phyra72242;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_114000011;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 135453 136919 . + . ID=Phyra72242;Parent=Phyra72242;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 135453 136919 . + 0 ID=Phyra72242;Parent=Phyra72242;rank=1 scaffold_114 . exon 135453 136919 . + . ID=Phyra72242.1;Parent=Phyra72242;constitutive=1;rank=1 scaffold_114 . exon 128696 128977 . + . ID=Phyra84501.3;Parent=Phyra84501;constitutive=1;rank=3 scaffold_114 . exon 129087 129278 . + . ID=Phyra84501.4;Parent=Phyra84501;constitutive=1;rank=4 scaffold_114 . exon 129352 129966 . + . ID=Phyra84501.5;Parent=Phyra84501;constitutive=1;rank=5 scaffold_114 ensembl protein_coding_gene 131220 132731 . - . ID=Phyra84502;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_114000041;logic_name=jgi_phyra1 scaffold_114 ensembl transcript 131220 132731 . - . ID=Phyra84502;Parent=Phyra84502;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_114 . CDS 131220 132731 . - 0 ID=Phyra84502;Parent=Phyra84502;rank=1 scaffold_114 . exon 131220 132731 . - . ID=Phyra84502.1;Parent=Phyra84502;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_113 1 140040 scaffold_113 . repeat_region 1059 2068 . ? . description=dust scaffold_113 . repeat_region 3255 7034 . ? . description=dust scaffold_113 . repeat_region 8288 8741 . ? . description=dust scaffold_113 . repeat_region 14780 14828 . ? . description=trf scaffold_113 . repeat_region 15002 15080 . ? . description=trf scaffold_113 . repeat_region 15188 15220 . ? . description=trf scaffold_113 . biological_region 17967 17970 0.999 - . logic_name=eponine scaffold_113 ensembl protein_coding_gene 9420 12318 . - . ID=Phyra84422;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000001;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 9420 12318 . - . ID=Phyra84422;Parent=Phyra84422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 9420 10376 . - 0 ID=Phyra84422;Parent=Phyra84422;rank=4 scaffold_113 . exon 9420 10376 . - . ID=Phyra84422.4;Parent=Phyra84422;constitutive=1;rank=4 scaffold_113 . CDS 10521 12042 . - 0 ID=Phyra84422;Parent=Phyra84422;rank=3 scaffold_113 . exon 10521 12042 . - . ID=Phyra84422.3;Parent=Phyra84422;constitutive=1;ensembl_phase=2;rank=3 scaffold_113 . CDS 12068 12213 . - 0 ID=Phyra84422;Parent=Phyra84422;rank=2 scaffold_113 . exon 12068 12213 . - . ID=Phyra84422.2;Parent=Phyra84422;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_113 . CDS 12259 12318 . - 0 ID=Phyra84422;Parent=Phyra84422;rank=1 scaffold_113 . exon 12259 12318 . - . ID=Phyra84422.1;Parent=Phyra84422;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 15117 16656 . + . ID=Phyra84423;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000002;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 15117 16656 . + . ID=Phyra84423;Parent=Phyra84423;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 15117 15695 . + 0 ID=Phyra84423;Parent=Phyra84423;rank=1 scaffold_113 . exon 15117 15695 . + . ID=Phyra84423.1;Parent=Phyra84423;constitutive=1;rank=1 scaffold_113 . CDS 16124 16312 . + 0 ID=Phyra84423;Parent=Phyra84423;rank=2 scaffold_113 . exon 16124 16312 . + . ID=Phyra84423.2;Parent=Phyra84423;constitutive=1;rank=2 scaffold_113 . CDS 16374 16594 . + 0 ID=Phyra84423;Parent=Phyra84423;rank=3 scaffold_113 . exon 16374 16594 . + . ID=Phyra84423.3;Parent=Phyra84423;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_113 . CDS 16629 16656 . + 0 ID=Phyra84423;Parent=Phyra84423;rank=4 scaffold_113 . exon 16629 16656 . + . ID=Phyra84423.4;Parent=Phyra84423;constitutive=1;ensembl_phase=2;rank=4 scaffold_113 ensembl protein_coding_gene 16978 21828 . - . ID=Phyra84424;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000003;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 16978 21828 . - . ID=Phyra84424;Parent=Phyra84424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 16978 17076 . - 0 ID=Phyra84424;Parent=Phyra84424;rank=5 scaffold_113 . exon 16978 17076 . - . ID=Phyra84424.5;Parent=Phyra84424;constitutive=1;rank=5 scaffold_113 . CDS 17439 18574 . - 0 ID=Phyra84424;Parent=Phyra84424;rank=4 scaffold_113 . exon 17439 18574 . - . ID=Phyra84424.4;Parent=Phyra84424;constitutive=1;ensembl_phase=1;rank=4 scaffold_113 . CDS 18665 18676 . - 0 ID=Phyra84424;Parent=Phyra84424;rank=3 scaffold_113 . exon 18665 18676 . - . ID=Phyra84424.3;Parent=Phyra84424;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_113 . CDS 18715 18911 . - 0 ID=Phyra84424;Parent=Phyra84424;rank=2 scaffold_113 . CDS 19052 21828 . - 0 ID=Phyra84424;Parent=Phyra84424;rank=1 scaffold_113 ensembl protein_coding_gene 26483 27666 . + . ID=Phyra40035;biotype=protein_coding;external_name=gwEuk.113.7.1;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 26483 27666 . + . ID=Phyra40035;Parent=Phyra40035;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 26483 26619 . + 0 ID=Phyra40035;Parent=Phyra40035;rank=1 scaffold_113 . exon 26483 26619 . + . ID=Phyra40035.1;Parent=Phyra40035;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_113 . CDS 26696 27479 . + 0 ID=Phyra40035;Parent=Phyra40035;rank=2 scaffold_113 . exon 26696 27479 . + . ID=Phyra40035.2;Parent=Phyra40035;constitutive=1;ensembl_phase=2;rank=2 scaffold_113 . CDS 27553 27666 . + 0 ID=Phyra40035;Parent=Phyra40035;rank=3 scaffold_113 . exon 27553 27666 . + . ID=Phyra40035.3;Parent=Phyra40035;constitutive=1;rank=3 scaffold_113 ensembl protein_coding_gene 23567 24478 . + . ID=Phyra72227;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_113000001;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 23567 24478 . + . ID=Phyra72227;Parent=Phyra72227;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 23567 24478 . + 0 ID=Phyra72227;Parent=Phyra72227;rank=1 scaffold_113 . exon 23567 24478 . + . ID=Phyra72227.1;Parent=Phyra72227;constitutive=1;rank=1 scaffold_113 . exon 18715 18911 . - . ID=Phyra84424.2;Parent=Phyra84424;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_113 . exon 19052 21828 . - . ID=Phyra84424.1;Parent=Phyra84424;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_113 ensembl protein_coding_gene 22013 23177 . + . ID=Phyra84425;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000004;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 22013 23177 . + . ID=Phyra84425;Parent=Phyra84425;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 22013 22078 . + 0 ID=Phyra84425;Parent=Phyra84425;rank=1 scaffold_113 . exon 22013 22078 . + . ID=Phyra84425.1;Parent=Phyra84425;constitutive=1;rank=1 scaffold_113 . CDS 22140 23177 . + 0 ID=Phyra84425;Parent=Phyra84425;rank=2 scaffold_113 . exon 22140 23177 . + . ID=Phyra84425.2;Parent=Phyra84425;constitutive=1;rank=2 scaffold_113 ensembl protein_coding_gene 24732 26174 . + . ID=Phyra84427;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000006;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 24732 26174 . + . ID=Phyra84427;Parent=Phyra84427;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 24732 26174 . + 0 ID=Phyra84427;Parent=Phyra84427;rank=1 scaffold_113 . exon 24732 26174 . + . ID=Phyra84427.1;Parent=Phyra84427;constitutive=1;rank=1 scaffold_113 . biological_region 32887 32887 0.999 - . logic_name=eponine scaffold_113 ensembl protein_coding_gene 30328 30954 . + . ID=Phyra84429;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000008;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 30328 30954 . + . ID=Phyra84429;Parent=Phyra84429;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 30328 30954 . + 0 ID=Phyra84429;Parent=Phyra84429;rank=1 scaffold_113 . exon 30328 30954 . + . ID=Phyra84429.1;Parent=Phyra84429;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 34540 37345 . + . ID=Phyra84430;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000009;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 34540 37345 . + . ID=Phyra84430;Parent=Phyra84430;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 34540 34771 . + 0 ID=Phyra84430;Parent=Phyra84430;rank=1 scaffold_113 . exon 34540 34771 . + . ID=Phyra84430.1;Parent=Phyra84430;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_113 . CDS 34850 35412 . + 0 ID=Phyra84430;Parent=Phyra84430;rank=2 scaffold_113 . exon 34850 35412 . + . ID=Phyra84430.2;Parent=Phyra84430;constitutive=1;ensembl_phase=1;rank=2 scaffold_113 . CDS 35498 35629 . + 0 ID=Phyra84430;Parent=Phyra84430;rank=3 scaffold_113 . exon 35498 35629 . + . ID=Phyra84430.3;Parent=Phyra84430;constitutive=1;rank=3 scaffold_113 . CDS 35859 35914 . + 0 ID=Phyra84430;Parent=Phyra84430;rank=4 scaffold_113 . exon 35859 35914 . + . ID=Phyra84430.4;Parent=Phyra84430;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_113 . CDS 36071 36277 . + 0 ID=Phyra84430;Parent=Phyra84430;rank=5 scaffold_113 . exon 36071 36277 . + . ID=Phyra84430.5;Parent=Phyra84430;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_113 . CDS 36341 36390 . + 0 ID=Phyra84430;Parent=Phyra84430;rank=6 scaffold_113 . exon 36341 36390 . + . ID=Phyra84430.6;Parent=Phyra84430;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_113 . CDS 36494 36557 . + 0 ID=Phyra84430;Parent=Phyra84430;rank=7 scaffold_113 . exon 36494 36557 . + . ID=Phyra84430.7;Parent=Phyra84430;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_113 . CDS 36639 36790 . + 0 ID=Phyra84430;Parent=Phyra84430;rank=8 scaffold_113 . exon 36639 36790 . + . ID=Phyra84430.8;Parent=Phyra84430;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_113 . CDS 36864 37345 . + 0 ID=Phyra84430;Parent=Phyra84430;rank=9 scaffold_113 . exon 36864 37345 . + . ID=Phyra84430.9;Parent=Phyra84430;constitutive=1;ensembl_phase=1;rank=9 scaffold_113 . repeat_region 37840 37864 . ? . description=trf scaffold_113 . repeat_region 40464 41459 . ? . description=dust scaffold_113 . repeat_region 43770 43778 . ? . description=dust scaffold_113 . repeat_region 43890 43982 . ? . description=dust scaffold_113 . repeat_region 43898 43982 . ? . description=trf scaffold_113 . repeat_region 43898 43985 . + . description=(CTG)n scaffold_113 . repeat_region 44680 44725 . ? . description=dust scaffold_113 . repeat_region 44681 44728 . ? . description=trf scaffold_113 ensembl protein_coding_gene 37899 40225 . + . ID=Phyra84431;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000010;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 37899 40225 . + . ID=Phyra84431;Parent=Phyra84431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 37899 38542 . + 0 ID=Phyra84431;Parent=Phyra84431;rank=1 scaffold_113 . exon 37899 38542 . + . ID=Phyra84431.1;Parent=Phyra84431;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_113 . CDS 38669 39055 . + 0 ID=Phyra84431;Parent=Phyra84431;rank=2 scaffold_113 . exon 38669 39055 . + . ID=Phyra84431.2;Parent=Phyra84431;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_113 . CDS 39182 39579 . + 0 ID=Phyra84431;Parent=Phyra84431;rank=3 scaffold_113 . exon 39182 39579 . + . ID=Phyra84431.3;Parent=Phyra84431;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_113 . CDS 39631 40076 . + 0 ID=Phyra84431;Parent=Phyra84431;rank=4 scaffold_113 . exon 39631 40076 . + . ID=Phyra84431.4;Parent=Phyra84431;constitutive=1;ensembl_phase=1;rank=4 scaffold_113 . CDS 40172 40225 . + 0 ID=Phyra84431;Parent=Phyra84431;rank=5 scaffold_113 . exon 40172 40225 . + . ID=Phyra84431.5;Parent=Phyra84431;constitutive=1;rank=5 scaffold_113 ensembl protein_coding_gene 41757 42725 . + . ID=Phyra84432;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000011;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 41757 42725 . + . ID=Phyra84432;Parent=Phyra84432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 41757 42725 . + 0 ID=Phyra84432;Parent=Phyra84432;rank=1 scaffold_113 . exon 41757 42725 . + . ID=Phyra84432.1;Parent=Phyra84432;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 42900 43741 . + . ID=Phyra84433;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000012;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 42900 43741 . + . ID=Phyra84433;Parent=Phyra84433;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 42900 43154 . + 0 ID=Phyra84433;Parent=Phyra84433;rank=1 scaffold_113 . exon 42900 43154 . + . ID=Phyra84433.1;Parent=Phyra84433;constitutive=1;rank=1 scaffold_113 . CDS 43217 43321 . + 0 ID=Phyra84433;Parent=Phyra84433;rank=2 scaffold_113 . exon 43217 43321 . + . ID=Phyra84433.2;Parent=Phyra84433;constitutive=1;rank=2 scaffold_113 . CDS 43382 43475 . + 0 ID=Phyra84433;Parent=Phyra84433;rank=3 scaffold_113 . exon 43382 43475 . + . ID=Phyra84433.3;Parent=Phyra84433;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_113 . CDS 43542 43741 . + 0 ID=Phyra84433;Parent=Phyra84433;rank=4 scaffold_113 . exon 43542 43741 . + . ID=Phyra84433.4;Parent=Phyra84433;constitutive=1;ensembl_phase=1;rank=4 scaffold_113 ensembl protein_coding_gene 43852 45613 . - . ID=Phyra84434;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000013;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 43852 45613 . - . ID=Phyra84434;Parent=Phyra84434;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 43852 43978 . - 0 ID=Phyra84434;Parent=Phyra84434;rank=2 scaffold_113 . exon 43852 43978 . - . ID=Phyra84434.2;Parent=Phyra84434;constitutive=1;ensembl_phase=2;rank=2 scaffold_113 . CDS 44070 45613 . - 0 ID=Phyra84434;Parent=Phyra84434;rank=1 scaffold_113 . exon 44070 45613 . - . ID=Phyra84434.1;Parent=Phyra84434;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_113 ensembl protein_coding_gene 45730 46731 . + . ID=Phyra84435;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000014;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 45730 46731 . + . ID=Phyra84435;Parent=Phyra84435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 45730 46731 . + 0 ID=Phyra84435;Parent=Phyra84435;rank=1 scaffold_113 . exon 45730 46731 . + . ID=Phyra84435.1;Parent=Phyra84435;constitutive=1;rank=1 scaffold_113 . biological_region 47886 47886 0.999 + . logic_name=eponine scaffold_113 . biological_region 48427 48430 0.999 - . logic_name=eponine scaffold_113 . biological_region 51038 51039 0.999 - . logic_name=eponine scaffold_113 ensembl protein_coding_gene 51851 52486 . + . ID=Phyra72228;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_113000002;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 51851 52486 . + . ID=Phyra72228;Parent=Phyra72228;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 51851 52486 . + 0 ID=Phyra72228;Parent=Phyra72228;rank=1 scaffold_113 . exon 51851 52486 . + . ID=Phyra72228.1;Parent=Phyra72228;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 47000 49433 . - . ID=Phyra84436;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000015;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 47000 49433 . - . ID=Phyra84436;Parent=Phyra84436;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 47000 48404 . - 0 ID=Phyra84436;Parent=Phyra84436;rank=2 scaffold_113 . exon 47000 48404 . - . ID=Phyra84436.2;Parent=Phyra84436;constitutive=1;ensembl_phase=2;rank=2 scaffold_113 . CDS 48547 49433 . - 0 ID=Phyra84436;Parent=Phyra84436;rank=1 scaffold_113 . exon 48547 49433 . - . ID=Phyra84436.1;Parent=Phyra84436;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_113 ensembl protein_coding_gene 49714 51742 . + . ID=Phyra84437;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000016;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 49714 51742 . + . ID=Phyra84437;Parent=Phyra84437;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 49714 49735 . + 0 ID=Phyra84437;Parent=Phyra84437;rank=1 scaffold_113 . exon 49714 49735 . + . ID=Phyra84437.1;Parent=Phyra84437;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_113 . CDS 49804 50016 . + 0 ID=Phyra84437;Parent=Phyra84437;rank=2 scaffold_113 . exon 49804 50016 . + . ID=Phyra84437.2;Parent=Phyra84437;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_113 . CDS 50080 51742 . + 0 ID=Phyra84437;Parent=Phyra84437;rank=3 scaffold_113 . exon 50080 51742 . + . ID=Phyra84437.3;Parent=Phyra84437;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_113 ensembl protein_coding_gene 52592 53495 . - . ID=Phyra84439;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000018;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 52592 53495 . - . ID=Phyra84439;Parent=Phyra84439;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 52592 53059 . - 0 ID=Phyra84439;Parent=Phyra84439;rank=3 scaffold_113 . exon 52592 53059 . - . ID=Phyra84439.3;Parent=Phyra84439;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_113 . CDS 53092 53327 . - 0 ID=Phyra84439;Parent=Phyra84439;rank=2 scaffold_113 . exon 53092 53327 . - . ID=Phyra84439.2;Parent=Phyra84439;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_113 . CDS 53382 53495 . - 0 ID=Phyra84439;Parent=Phyra84439;rank=1 scaffold_113 . exon 53382 53495 . - . ID=Phyra84439.1;Parent=Phyra84439;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 54036 57547 . + . ID=Phyra84440;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000019;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 54036 57547 . + . ID=Phyra84440;Parent=Phyra84440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 54036 56504 . + 0 ID=Phyra84440;Parent=Phyra84440;rank=1 scaffold_113 . exon 54036 56504 . + . ID=Phyra84440.1;Parent=Phyra84440;constitutive=1;rank=1 scaffold_113 . CDS 56571 56645 . + 0 ID=Phyra84440;Parent=Phyra84440;rank=2 scaffold_113 . CDS 56716 56805 . + 0 ID=Phyra84440;Parent=Phyra84440;rank=3 scaffold_113 . CDS 56879 57004 . + 0 ID=Phyra84440;Parent=Phyra84440;rank=4 scaffold_113 . CDS 57140 57221 . + 0 ID=Phyra84440;Parent=Phyra84440;rank=5 scaffold_113 . CDS 57285 57427 . + 0 ID=Phyra84440;Parent=Phyra84440;rank=6 scaffold_113 . CDS 57518 57547 . + 0 ID=Phyra84440;Parent=Phyra84440;rank=7 scaffold_113 . repeat_region 57990 58016 . ? . description=trf scaffold_113 . repeat_region 58056 58111 . ? . description=trf scaffold_113 . repeat_region 58056 58111 . ? . description=dust scaffold_113 . repeat_region 58056 58114 . ? . description=trf scaffold_113 . repeat_region 58056 58118 . ? . description=trf scaffold_113 . repeat_region 58056 58118 . ? . description=trf scaffold_113 . repeat_region 58142 58178 . ? . description=trf scaffold_113 . repeat_region 58145 58208 . ? . description=dust scaffold_113 . repeat_region 58224 58257 . ? . description=dust scaffold_113 . repeat_region 58308 58337 . ? . description=trf scaffold_113 . repeat_region 58308 58337 . ? . description=dust scaffold_113 . repeat_region 58369 58429 . ? . description=dust scaffold_113 . repeat_region 58395 58433 . ? . description=trf scaffold_113 ensembl protein_coding_gene 58536 60218 . + . ID=Phyra40048;biotype=protein_coding;external_name=gwEuk.113.20.1;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 58536 60218 . + . ID=Phyra40048;Parent=Phyra40048;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 58536 60218 . + 0 ID=Phyra40048;Parent=Phyra40048;rank=1 scaffold_113 . exon 58536 60218 . + . ID=Phyra40048.1;Parent=Phyra40048;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 60769 61503 . + . ID=Phyra72230;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_113000004;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 60769 61503 . + . ID=Phyra72230;Parent=Phyra72230;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 60769 60843 . + 0 ID=Phyra72230;Parent=Phyra72230;rank=1 scaffold_113 . exon 60769 60843 . + . ID=Phyra72230.1;Parent=Phyra72230;constitutive=1;rank=1 scaffold_113 . CDS 60927 60995 . + 0 ID=Phyra72230;Parent=Phyra72230;rank=2 scaffold_113 . exon 60927 60995 . + . ID=Phyra72230.2;Parent=Phyra72230;constitutive=1;rank=2 scaffold_113 . CDS 61234 61503 . + 0 ID=Phyra72230;Parent=Phyra72230;rank=3 scaffold_113 . exon 61234 61503 . + . ID=Phyra72230.3;Parent=Phyra72230;constitutive=1;rank=3 scaffold_113 . exon 56571 56645 . + . ID=Phyra84440.2;Parent=Phyra84440;constitutive=1;rank=2 scaffold_113 . exon 56716 56805 . + . ID=Phyra84440.3;Parent=Phyra84440;constitutive=1;rank=3 scaffold_113 . exon 56879 57004 . + . ID=Phyra84440.4;Parent=Phyra84440;constitutive=1;rank=4 scaffold_113 . exon 57140 57221 . + . ID=Phyra84440.5;Parent=Phyra84440;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_113 . exon 57285 57427 . + . ID=Phyra84440.6;Parent=Phyra84440;constitutive=1;ensembl_phase=1;rank=6 scaffold_113 . exon 57518 57547 . + . ID=Phyra84440.7;Parent=Phyra84440;constitutive=1;rank=7 scaffold_113 ensembl protein_coding_gene 63198 65128 . - . ID=Phyra96847;biotype=protein_coding;external_name=C_scaffold_113000004;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 63198 65128 . - . ID=Phyra96847;Parent=Phyra96847;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 63198 63360 . - 0 ID=Phyra96847;Parent=Phyra96847;rank=6 scaffold_113 . exon 63198 63360 . - . ID=Phyra96847.6;Parent=Phyra96847;constitutive=1;ensembl_phase=2;rank=6 scaffold_113 . CDS 63607 63698 . - 0 ID=Phyra96847;Parent=Phyra96847;rank=5 scaffold_113 . exon 63607 63698 . - . ID=Phyra96847.5;Parent=Phyra96847;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_113 . CDS 63770 64020 . - 0 ID=Phyra96847;Parent=Phyra96847;rank=4 scaffold_113 . exon 63770 64020 . - . ID=Phyra96847.4;Parent=Phyra96847;constitutive=1;ensembl_phase=1;rank=4 scaffold_113 . CDS 64051 64164 . - 0 ID=Phyra96847;Parent=Phyra96847;rank=3 scaffold_113 . exon 64051 64164 . - . ID=Phyra96847.3;Parent=Phyra96847;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_113 . CDS 64232 64353 . - 0 ID=Phyra96847;Parent=Phyra96847;rank=2 scaffold_113 . exon 64232 64353 . - . ID=Phyra96847.2;Parent=Phyra96847;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_113 . CDS 64431 65128 . - 0 ID=Phyra96847;Parent=Phyra96847;rank=1 scaffold_113 . exon 64431 65128 . - . ID=Phyra96847.1;Parent=Phyra96847;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_113 ensembl protein_coding_gene 65299 67013 . + . ID=Phyra96848;biotype=protein_coding;external_name=C_scaffold_113000005;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 65299 67013 . + . ID=Phyra96848;Parent=Phyra96848;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 65299 65463 . + 0 ID=Phyra96848;Parent=Phyra96848;rank=1 scaffold_113 . exon 65299 65463 . + . ID=Phyra96848.1;Parent=Phyra96848;constitutive=1;rank=1 scaffold_113 . CDS 65521 66132 . + 0 ID=Phyra96848;Parent=Phyra96848;rank=2 scaffold_113 . CDS 66208 66735 . + 0 ID=Phyra96848;Parent=Phyra96848;rank=3 scaffold_113 . CDS 66834 67013 . + 0 ID=Phyra96848;Parent=Phyra96848;rank=4 scaffold_113 . biological_region 73338 73342 0.999 + . logic_name=eponine scaffold_113 . biological_region 73353 73355 0.999 - . logic_name=eponine scaffold_113 . biological_region 74176 74178 0.999 + . logic_name=eponine scaffold_113 . biological_region 74289 74293 0.999 - . logic_name=eponine scaffold_113 ensembl protein_coding_gene 67218 69809 . - . ID=Phyra84445;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000024;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 67218 69809 . - . ID=Phyra84445;Parent=Phyra84445;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 67218 67562 . - 0 ID=Phyra84445;Parent=Phyra84445;rank=11 scaffold_113 . exon 67218 67562 . - . ID=Phyra84445.11;Parent=Phyra84445;constitutive=1;rank=11 scaffold_113 . CDS 67629 67727 . - 0 ID=Phyra84445;Parent=Phyra84445;rank=10 scaffold_113 . exon 67629 67727 . - . ID=Phyra84445.10;Parent=Phyra84445;constitutive=1;rank=10 scaffold_113 . CDS 67792 67836 . - 0 ID=Phyra84445;Parent=Phyra84445;rank=9 scaffold_113 . exon 67792 67836 . - . ID=Phyra84445.9;Parent=Phyra84445;constitutive=1;rank=9 scaffold_113 . CDS 68103 68271 . - 0 ID=Phyra84445;Parent=Phyra84445;rank=8 scaffold_113 . exon 68103 68271 . - . ID=Phyra84445.8;Parent=Phyra84445;constitutive=1;ensembl_phase=2;rank=8 scaffold_113 . CDS 68347 68403 . - 0 ID=Phyra84445;Parent=Phyra84445;rank=7 scaffold_113 . exon 68347 68403 . - . ID=Phyra84445.7;Parent=Phyra84445;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_113 . CDS 68472 68881 . - 0 ID=Phyra84445;Parent=Phyra84445;rank=6 scaffold_113 . exon 68472 68881 . - . ID=Phyra84445.6;Parent=Phyra84445;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_113 . CDS 68970 69014 . - 0 ID=Phyra84445;Parent=Phyra84445;rank=5 scaffold_113 . exon 68970 69014 . - . ID=Phyra84445.5;Parent=Phyra84445;constitutive=1;rank=5 scaffold_113 . CDS 69092 69220 . - 0 ID=Phyra84445;Parent=Phyra84445;rank=4 scaffold_113 . exon 69092 69220 . - . ID=Phyra84445.4;Parent=Phyra84445;constitutive=1;rank=4 scaffold_113 . CDS 69294 69441 . - 0 ID=Phyra84445;Parent=Phyra84445;rank=3 scaffold_113 . exon 69294 69441 . - . ID=Phyra84445.3;Parent=Phyra84445;constitutive=1;ensembl_phase=2;rank=3 scaffold_113 . CDS 69523 69603 . - 0 ID=Phyra84445;Parent=Phyra84445;rank=2 scaffold_113 . exon 69523 69603 . - . ID=Phyra84445.2;Parent=Phyra84445;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_113 . CDS 69673 69809 . - 0 ID=Phyra84445;Parent=Phyra84445;rank=1 scaffold_113 . exon 69673 69809 . - . ID=Phyra84445.1;Parent=Phyra84445;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_113 ensembl protein_coding_gene 71467 72417 . + . ID=Phyra84447;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000026;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 71467 72417 . + . ID=Phyra84447;Parent=Phyra84447;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 71467 72417 . + 0 ID=Phyra84447;Parent=Phyra84447;rank=1 scaffold_113 . exon 71467 72417 . + . ID=Phyra84447.1;Parent=Phyra84447;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 72626 74650 . - . ID=Phyra84448;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000027;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 72626 74650 . - . ID=Phyra84448;Parent=Phyra84448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 72626 73067 . - 0 ID=Phyra84448;Parent=Phyra84448;rank=3 scaffold_113 . exon 72626 73067 . - . ID=Phyra84448.3;Parent=Phyra84448;constitutive=1;ensembl_phase=2;rank=3 scaffold_113 . CDS 73140 73688 . - 0 ID=Phyra84448;Parent=Phyra84448;rank=2 scaffold_113 . exon 73140 73688 . - . ID=Phyra84448.2;Parent=Phyra84448;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_113 . CDS 73821 74650 . - 0 ID=Phyra84448;Parent=Phyra84448;rank=1 scaffold_113 . exon 73821 74650 . - . ID=Phyra84448.1;Parent=Phyra84448;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_113 . exon 65521 66132 . + . ID=Phyra96848.2;Parent=Phyra96848;constitutive=1;rank=2 scaffold_113 . exon 66208 66735 . + . ID=Phyra96848.3;Parent=Phyra96848;constitutive=1;rank=3 scaffold_113 . exon 66834 67013 . + . ID=Phyra96848.4;Parent=Phyra96848;constitutive=1;rank=4 scaffold_113 ensembl protein_coding_gene 70091 71033 . - . ID=Phyra96851;biotype=protein_coding;external_name=C_scaffold_113000008;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 70091 71033 . - . ID=Phyra96851;Parent=Phyra96851;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 70091 70532 . - 0 ID=Phyra96851;Parent=Phyra96851;rank=2 scaffold_113 . exon 70091 70532 . - . ID=Phyra96851.2;Parent=Phyra96851;constitutive=1;ensembl_phase=2;rank=2 scaffold_113 . CDS 70615 71033 . - 0 ID=Phyra96851;Parent=Phyra96851;rank=1 scaffold_113 . exon 70615 71033 . - . ID=Phyra96851.1;Parent=Phyra96851;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_113 . repeat_region 82095 82102 . ? . description=dust scaffold_113 . repeat_region 82918 82931 . ? . description=dust scaffold_113 ensembl protein_coding_gene 75334 77215 . - . ID=Phyra84449;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000028;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 75334 77215 . - . ID=Phyra84449;Parent=Phyra84449;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 75334 75672 . - 0 ID=Phyra84449;Parent=Phyra84449;rank=2 scaffold_113 . exon 75334 75672 . - . ID=Phyra84449.2;Parent=Phyra84449;constitutive=1;rank=2 scaffold_113 . CDS 75755 77215 . - 0 ID=Phyra84449;Parent=Phyra84449;rank=1 scaffold_113 . exon 75755 77215 . - . ID=Phyra84449.1;Parent=Phyra84449;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 77304 81654 . + . ID=Phyra84450;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000029;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 77304 81654 . + . ID=Phyra84450;Parent=Phyra84450;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 77304 77306 . + 0 ID=Phyra84450;Parent=Phyra84450;rank=1 scaffold_113 . exon 77304 77306 . + . ID=Phyra84450.1;Parent=Phyra84450;constitutive=1;rank=1 scaffold_113 . CDS 77395 77478 . + 0 ID=Phyra84450;Parent=Phyra84450;rank=2 scaffold_113 . exon 77395 77478 . + . ID=Phyra84450.2;Parent=Phyra84450;constitutive=1;rank=2 scaffold_113 . CDS 77543 77599 . + 0 ID=Phyra84450;Parent=Phyra84450;rank=3 scaffold_113 . exon 77543 77599 . + . ID=Phyra84450.3;Parent=Phyra84450;constitutive=1;rank=3 scaffold_113 . CDS 77786 77968 . + 0 ID=Phyra84450;Parent=Phyra84450;rank=4 scaffold_113 . exon 77786 77968 . + . ID=Phyra84450.4;Parent=Phyra84450;constitutive=1;rank=4 scaffold_113 . CDS 78045 78219 . + 0 ID=Phyra84450;Parent=Phyra84450;rank=5 scaffold_113 . exon 78045 78219 . + . ID=Phyra84450.5;Parent=Phyra84450;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_113 . CDS 78399 78743 . + 0 ID=Phyra84450;Parent=Phyra84450;rank=6 scaffold_113 . exon 78399 78743 . + . ID=Phyra84450.6;Parent=Phyra84450;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_113 . CDS 78805 79236 . + 0 ID=Phyra84450;Parent=Phyra84450;rank=7 scaffold_113 . exon 78805 79236 . + . ID=Phyra84450.7;Parent=Phyra84450;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_113 . CDS 79323 80426 . + 0 ID=Phyra84450;Parent=Phyra84450;rank=8 scaffold_113 . exon 79323 80426 . + . ID=Phyra84450.8;Parent=Phyra84450;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_113 . CDS 80492 81654 . + 0 ID=Phyra84450;Parent=Phyra84450;rank=9 scaffold_113 . exon 80492 81654 . + . ID=Phyra84450.9;Parent=Phyra84450;constitutive=1;ensembl_phase=1;rank=9 scaffold_113 ensembl protein_coding_gene 81884 82390 . - . ID=Phyra84451;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000030;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 81884 82390 . - . ID=Phyra84451;Parent=Phyra84451;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 81884 81955 . - 0 ID=Phyra84451;Parent=Phyra84451;rank=3 scaffold_113 . exon 81884 81955 . - . ID=Phyra84451.3;Parent=Phyra84451;constitutive=1;rank=3 scaffold_113 . CDS 82012 82083 . - 0 ID=Phyra84451;Parent=Phyra84451;rank=2 scaffold_113 . exon 82012 82083 . - . ID=Phyra84451.2;Parent=Phyra84451;constitutive=1;rank=2 scaffold_113 . CDS 82154 82390 . - 0 ID=Phyra84451;Parent=Phyra84451;rank=1 scaffold_113 . exon 82154 82390 . - . ID=Phyra84451.1;Parent=Phyra84451;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 83034 83846 . - . ID=Phyra84452;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000031;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 83034 83846 . - . ID=Phyra84452;Parent=Phyra84452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 83034 83846 . - 0 ID=Phyra84452;Parent=Phyra84452;rank=1 scaffold_113 . exon 83034 83846 . - . ID=Phyra84452.1;Parent=Phyra84452;constitutive=1;rank=1 scaffold_113 . biological_region 84170 84172 0.999 + . logic_name=eponine scaffold_113 . biological_region 84284 84289 0.999 + . logic_name=eponine scaffold_113 . biological_region 84300 84301 0.999 - . logic_name=eponine scaffold_113 . biological_region 84831 84832 0.999 + . logic_name=eponine scaffold_113 . biological_region 84897 84901 0.999 - . logic_name=eponine scaffold_113 . biological_region 84945 84951 0.999 - . logic_name=eponine scaffold_113 . biological_region 85004 85004 0.999 - . logic_name=eponine scaffold_113 . biological_region 89025 89025 0.999 + . logic_name=eponine scaffold_113 . repeat_region 92146 92187 . ? . description=trf scaffold_113 ensembl protein_coding_gene 85552 87713 . - . ID=Phyra84453;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000032;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 85552 87713 . - . ID=Phyra84453;Parent=Phyra84453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 85552 85666 . - 0 ID=Phyra84453;Parent=Phyra84453;rank=6 scaffold_113 . exon 85552 85666 . - . ID=Phyra84453.6;Parent=Phyra84453;constitutive=1;ensembl_phase=2;rank=6 scaffold_113 . CDS 85782 86327 . - 0 ID=Phyra84453;Parent=Phyra84453;rank=5 scaffold_113 . exon 85782 86327 . - . ID=Phyra84453.5;Parent=Phyra84453;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_113 . CDS 86766 87096 . - 0 ID=Phyra84453;Parent=Phyra84453;rank=4 scaffold_113 . exon 86766 87096 . - . ID=Phyra84453.4;Parent=Phyra84453;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_113 . CDS 87180 87233 . - 0 ID=Phyra84453;Parent=Phyra84453;rank=3 scaffold_113 . exon 87180 87233 . - . ID=Phyra84453.3;Parent=Phyra84453;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_113 . CDS 87333 87545 . - 0 ID=Phyra84453;Parent=Phyra84453;rank=2 scaffold_113 . exon 87333 87545 . - . ID=Phyra84453.2;Parent=Phyra84453;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_113 . CDS 87614 87713 . - 0 ID=Phyra84453;Parent=Phyra84453;rank=1 scaffold_113 . exon 87614 87713 . - . ID=Phyra84453.1;Parent=Phyra84453;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_113 ensembl protein_coding_gene 87977 92833 . + . ID=Phyra84454;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000033;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 87977 92833 . + . ID=Phyra84454;Parent=Phyra84454;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 87977 92833 . + 0 ID=Phyra84454;Parent=Phyra84454;rank=1 scaffold_113 . exon 87977 92833 . + . ID=Phyra84454.1;Parent=Phyra84454;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 93051 94113 . - . ID=Phyra96855;biotype=protein_coding;external_name=C_scaffold_113000012;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 93051 94113 . - . ID=Phyra96855;Parent=Phyra96855;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 93051 93105 . - 0 ID=Phyra96855;Parent=Phyra96855;rank=5 scaffold_113 . exon 93051 93105 . - . ID=Phyra96855.5;Parent=Phyra96855;constitutive=1;ensembl_phase=2;rank=5 scaffold_113 . CDS 93167 93245 . - 0 ID=Phyra96855;Parent=Phyra96855;rank=4 scaffold_113 . exon 93167 93245 . - . ID=Phyra96855.4;Parent=Phyra96855;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_113 . CDS 93318 93380 . - 0 ID=Phyra96855;Parent=Phyra96855;rank=3 scaffold_113 . exon 93318 93380 . - . ID=Phyra96855.3;Parent=Phyra96855;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_113 . CDS 93727 93858 . - 0 ID=Phyra96855;Parent=Phyra96855;rank=2 scaffold_113 . CDS 93933 94113 . - 0 ID=Phyra96855;Parent=Phyra96855;rank=1 scaffold_113 . repeat_region 96474 96523 . ? . description=dust scaffold_113 . repeat_region 96548 96555 . ? . description=dust scaffold_113 . repeat_region 101620 101899 . - . description=GypsyPi-1c_I-int scaffold_113 . repeat_region 102213 104431 . - . description=GypsyPi-1c_I-int scaffold_113 ensembl protein_coding_gene 95446 97023 . - . ID=Phyra84455;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000034;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 95446 97023 . - . ID=Phyra84455;Parent=Phyra84455;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 95446 96162 . - 0 ID=Phyra84455;Parent=Phyra84455;rank=4 scaffold_113 . exon 95446 96162 . - . ID=Phyra84455.4;Parent=Phyra84455;constitutive=1;rank=4 scaffold_113 . CDS 96303 96470 . - 0 ID=Phyra84455;Parent=Phyra84455;rank=3 scaffold_113 . exon 96303 96470 . - . ID=Phyra84455.3;Parent=Phyra84455;constitutive=1;rank=3 scaffold_113 . CDS 96626 96871 . - 0 ID=Phyra84455;Parent=Phyra84455;rank=2 scaffold_113 . exon 96626 96871 . - . ID=Phyra84455.2;Parent=Phyra84455;constitutive=1;rank=2 scaffold_113 . CDS 96937 97023 . - 0 ID=Phyra84455;Parent=Phyra84455;rank=1 scaffold_113 . exon 96937 97023 . - . ID=Phyra84455.1;Parent=Phyra84455;constitutive=1;rank=1 scaffold_113 . exon 93727 93858 . - . ID=Phyra96855.2;Parent=Phyra96855;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_113 . exon 93933 94113 . - . ID=Phyra96855.1;Parent=Phyra96855;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_113 . repeat_region 103158 103200 . ? . description=trf scaffold_113 . biological_region 104911 104912 0.999 - . logic_name=eponine scaffold_113 . biological_region 104962 104967 0.999 - . logic_name=eponine scaffold_113 . biological_region 105002 105005 0.999 + . logic_name=eponine scaffold_113 . biological_region 105066 105069 0.999 - . logic_name=eponine scaffold_113 . biological_region 105118 105120 0.999 - . logic_name=eponine scaffold_113 . repeat_region 107573 107615 . ? . description=trf scaffold_113 . biological_region 109754 109758 0.999 - . logic_name=eponine scaffold_113 . biological_region 109782 109784 0.999 - . logic_name=eponine scaffold_113 ensembl protein_coding_gene 103158 103889 . - . ID=Phyra72231;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_113000005;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 103158 103889 . - . ID=Phyra72231;Parent=Phyra72231;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 103158 103889 . - 0 ID=Phyra72231;Parent=Phyra72231;rank=1 scaffold_113 . exon 103158 103889 . - . ID=Phyra72231.1;Parent=Phyra72231;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 103994 105076 . - . ID=Phyra84457;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000036;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 103994 105076 . - . ID=Phyra84457;Parent=Phyra84457;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 103994 104324 . - 0 ID=Phyra84457;Parent=Phyra84457;rank=2 scaffold_113 . exon 103994 104324 . - . ID=Phyra84457.2;Parent=Phyra84457;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_113 . CDS 104362 105076 . - 0 ID=Phyra84457;Parent=Phyra84457;rank=1 scaffold_113 . exon 104362 105076 . - . ID=Phyra84457.1;Parent=Phyra84457;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_113 ensembl protein_coding_gene 110257 114449 . - . ID=Phyra84458;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000037;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 110257 114449 . - . ID=Phyra84458;Parent=Phyra84458;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 110257 110401 . - 0 ID=Phyra84458;Parent=Phyra84458;rank=6 scaffold_113 . exon 110257 110401 . - . ID=Phyra84458.6;Parent=Phyra84458;constitutive=1;ensembl_phase=2;rank=6 scaffold_113 . CDS 110421 110613 . - 0 ID=Phyra84458;Parent=Phyra84458;rank=5 scaffold_113 . exon 110421 110613 . - . ID=Phyra84458.5;Parent=Phyra84458;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_113 . CDS 110848 111946 . - 0 ID=Phyra84458;Parent=Phyra84458;rank=4 scaffold_113 . exon 110848 111946 . - . ID=Phyra84458.4;Parent=Phyra84458;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_113 . CDS 112247 112471 . - 0 ID=Phyra84458;Parent=Phyra84458;rank=3 scaffold_113 . CDS 112645 114014 . - 0 ID=Phyra84458;Parent=Phyra84458;rank=2 scaffold_113 . CDS 114101 114449 . - 0 ID=Phyra84458;Parent=Phyra84458;rank=1 scaffold_113 . repeat_region 110459 112064 . - . description=GypsyPi-1c_I-int scaffold_113 . repeat_region 112065 112231 . ? . description=dust scaffold_113 . repeat_region 112242 112757 . - . description=GypsyPi-1c_I-int scaffold_113 . repeat_region 113490 114056 . - . description=GypsyPi-1c_I-int scaffold_113 . repeat_region 114631 114708 . ? . description=dust scaffold_113 . repeat_region 116071 116120 . ? . description=dust scaffold_113 . repeat_region 120791 120956 . ? . description=dust scaffold_113 . exon 112247 112471 . - . ID=Phyra84458.3;Parent=Phyra84458;constitutive=1;rank=3 scaffold_113 . exon 112645 114014 . - . ID=Phyra84458.2;Parent=Phyra84458;constitutive=1;ensembl_phase=1;rank=2 scaffold_113 . exon 114101 114449 . - . ID=Phyra84458.1;Parent=Phyra84458;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_113 ensembl protein_coding_gene 116944 120784 . - . ID=Phyra84459;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000038;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 116944 120784 . - . ID=Phyra84459;Parent=Phyra84459;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 116944 118390 . - 0 ID=Phyra84459;Parent=Phyra84459;rank=5 scaffold_113 . exon 116944 118390 . - . ID=Phyra84459.5;Parent=Phyra84459;constitutive=1;ensembl_phase=2;rank=5 scaffold_113 . CDS 118489 118960 . - 0 ID=Phyra84459;Parent=Phyra84459;rank=4 scaffold_113 . exon 118489 118960 . - . ID=Phyra84459.4;Parent=Phyra84459;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_113 . CDS 119404 119538 . - 0 ID=Phyra84459;Parent=Phyra84459;rank=3 scaffold_113 . exon 119404 119538 . - . ID=Phyra84459.3;Parent=Phyra84459;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_113 . CDS 119587 120412 . - 0 ID=Phyra84459;Parent=Phyra84459;rank=2 scaffold_113 . exon 119587 120412 . - . ID=Phyra84459.2;Parent=Phyra84459;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_113 . CDS 120566 120784 . - 0 ID=Phyra84459;Parent=Phyra84459;rank=1 scaffold_113 . exon 120566 120784 . - . ID=Phyra84459.1;Parent=Phyra84459;constitutive=1;rank=1 scaffold_113 . biological_region 121464 121467 0.999 + . logic_name=eponine scaffold_113 . biological_region 121504 121507 0.999 - . logic_name=eponine scaffold_113 . repeat_region 121822 121883 . ? . description=trf scaffold_113 . repeat_region 121874 121954 . ? . description=trf scaffold_113 . biological_region 127434 127439 0.999 + . logic_name=eponine scaffold_113 . biological_region 128959 128963 0.999 + . logic_name=eponine scaffold_113 . biological_region 129723 129725 0.999 - . logic_name=eponine scaffold_113 ensembl protein_coding_gene 130555 133097 . - . ID=Phyra84460;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000039;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 130555 133097 . - . ID=Phyra84460;Parent=Phyra84460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 130555 131482 . - 0 ID=Phyra84460;Parent=Phyra84460;rank=3 scaffold_113 . exon 130555 131482 . - . ID=Phyra84460.3;Parent=Phyra84460;constitutive=1;ensembl_phase=2;rank=3 scaffold_113 . CDS 131651 132304 . - 0 ID=Phyra84460;Parent=Phyra84460;rank=2 scaffold_113 . CDS 132493 133097 . - 0 ID=Phyra84460;Parent=Phyra84460;rank=1 scaffold_113 . repeat_region 135116 138172 . ? . description=dust scaffold_113 . exon 131651 132304 . - . ID=Phyra84460.2;Parent=Phyra84460;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_113 . exon 132493 133097 . - . ID=Phyra84460.1;Parent=Phyra84460;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_113 ensembl protein_coding_gene 138394 140028 . + . ID=Phyra84461;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_113000040;logic_name=jgi_phyra1 scaffold_113 ensembl transcript 138394 140028 . + . ID=Phyra84461;Parent=Phyra84461;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_113 . CDS 138394 140028 . + 0 ID=Phyra84461;Parent=Phyra84461;rank=1 scaffold_113 . exon 138394 140028 . + . ID=Phyra84461.1;Parent=Phyra84461;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_112 1 140061 scaffold_112 . biological_region 2309 2311 0.999 + . logic_name=eponine scaffold_112 . repeat_region 4051 4060 . ? . description=dust scaffold_112 . repeat_region 8448 8519 . ? . description=trf scaffold_112 ensembl protein_coding_gene 125 2137 . + . ID=Phyra72224;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_112000001;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 125 2137 . + . ID=Phyra72224;Parent=Phyra72224;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 125 270 . + 0 ID=Phyra72224;Parent=Phyra72224;rank=1 scaffold_112 . exon 125 270 . + . ID=Phyra72224.1;Parent=Phyra72224;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 . CDS 338 401 . + 0 ID=Phyra72224;Parent=Phyra72224;rank=2 scaffold_112 . exon 338 401 . + . ID=Phyra72224.2;Parent=Phyra72224;constitutive=1;ensembl_phase=2;rank=2 scaffold_112 . CDS 478 516 . + 0 ID=Phyra72224;Parent=Phyra72224;rank=3 scaffold_112 . exon 478 516 . + . ID=Phyra72224.3;Parent=Phyra72224;constitutive=1;rank=3 scaffold_112 . CDS 628 720 . + 0 ID=Phyra72224;Parent=Phyra72224;rank=4 scaffold_112 . exon 628 720 . + . ID=Phyra72224.4;Parent=Phyra72224;constitutive=1;rank=4 scaffold_112 . CDS 793 876 . + 0 ID=Phyra72224;Parent=Phyra72224;rank=5 scaffold_112 . exon 793 876 . + . ID=Phyra72224.5;Parent=Phyra72224;constitutive=1;rank=5 scaffold_112 . CDS 951 1221 . + 0 ID=Phyra72224;Parent=Phyra72224;rank=6 scaffold_112 . exon 951 1221 . + . ID=Phyra72224.6;Parent=Phyra72224;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_112 . CDS 1298 1392 . + 0 ID=Phyra72224;Parent=Phyra72224;rank=7 scaffold_112 . exon 1298 1392 . + . ID=Phyra72224.7;Parent=Phyra72224;constitutive=1;ensembl_phase=1;rank=7 scaffold_112 . CDS 1466 2137 . + 0 ID=Phyra72224;Parent=Phyra72224;rank=8 scaffold_112 . exon 1466 2137 . + . ID=Phyra72224.8;Parent=Phyra72224;constitutive=1;rank=8 scaffold_112 ensembl protein_coding_gene 4552 6303 . + . ID=Phyra84378;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000003;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 4552 6303 . + . ID=Phyra84378;Parent=Phyra84378;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 4552 6303 . + 0 ID=Phyra84378;Parent=Phyra84378;rank=1 scaffold_112 . exon 4552 6303 . + . ID=Phyra84378.1;Parent=Phyra84378;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 8343 10832 . + . ID=Phyra84379;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000004;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 8343 10832 . + . ID=Phyra84379;Parent=Phyra84379;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 8343 8347 . + 0 ID=Phyra84379;Parent=Phyra84379;rank=1 scaffold_112 . exon 8343 8347 . + . ID=Phyra84379.1;Parent=Phyra84379;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 . CDS 8383 8664 . + 0 ID=Phyra84379;Parent=Phyra84379;rank=2 scaffold_112 . exon 8383 8664 . + . ID=Phyra84379.2;Parent=Phyra84379;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_112 . CDS 9155 10832 . + 0 ID=Phyra84379;Parent=Phyra84379;rank=3 scaffold_112 . exon 9155 10832 . + . ID=Phyra84379.3;Parent=Phyra84379;constitutive=1;ensembl_phase=2;rank=3 scaffold_112 ensembl protein_coding_gene 12531 13119 . - . ID=Phyra84380;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000005;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 12531 13119 . - . ID=Phyra84380;Parent=Phyra84380;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 12531 12895 . - 0 ID=Phyra84380;Parent=Phyra84380;rank=2 scaffold_112 . exon 12531 12895 . - . ID=Phyra84380.2;Parent=Phyra84380;constitutive=1;ensembl_phase=1;rank=2 scaffold_112 . CDS 12954 13119 . - 0 ID=Phyra84380;Parent=Phyra84380;rank=1 scaffold_112 . exon 12954 13119 . - . ID=Phyra84380.1;Parent=Phyra84380;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_112 ensembl protein_coding_gene 14018 15109 . + . ID=Phyra84381;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000006;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 14018 15109 . + . ID=Phyra84381;Parent=Phyra84381;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 14018 15109 . + 0 ID=Phyra84381;Parent=Phyra84381;rank=1 scaffold_112 . exon 14018 15109 . + . ID=Phyra84381.1;Parent=Phyra84381;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 15548 16585 . - . ID=Phyra84382;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000007;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 15548 16585 . - . ID=Phyra84382;Parent=Phyra84382;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 15548 16585 . - 0 ID=Phyra84382;Parent=Phyra84382;rank=1 scaffold_112 . exon 15548 16585 . - . ID=Phyra84382.1;Parent=Phyra84382;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 17575 18648 . + . ID=Phyra84383;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000008;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 17575 18648 . + . ID=Phyra84383;Parent=Phyra84383;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 17575 18648 . + 0 ID=Phyra84383;Parent=Phyra84383;rank=1 scaffold_112 . exon 17575 18648 . + . ID=Phyra84383.1;Parent=Phyra84383;constitutive=1;rank=1 scaffold_112 . biological_region 19484 19490 0.999 - . logic_name=eponine scaffold_112 . biological_region 19504 19512 0.999 - . logic_name=eponine scaffold_112 . biological_region 19592 19592 0.999 - . logic_name=eponine scaffold_112 . biological_region 19952 19954 0.999 - . logic_name=eponine scaffold_112 . biological_region 20999 21003 0.999 - . logic_name=eponine scaffold_112 . biological_region 21231 21239 0.999 + . logic_name=eponine scaffold_112 . biological_region 21594 21595 0.999 + . logic_name=eponine scaffold_112 . biological_region 21804 21808 0.999 + . logic_name=eponine scaffold_112 . biological_region 21889 21890 0.999 - . logic_name=eponine scaffold_112 . biological_region 23066 23070 0.999 + . logic_name=eponine scaffold_112 . biological_region 24662 24664 0.999 - . logic_name=eponine scaffold_112 . repeat_region 27217 27224 . ? . description=dust scaffold_112 ensembl protein_coding_gene 27249 27443 . - . ID=Phyra39983;biotype=protein_coding;external_name=gwEuk.112.6.1;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 27249 27443 . - . ID=Phyra39983;Parent=Phyra39983;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 27249 27443 . - 0 ID=Phyra39983;Parent=Phyra39983;rank=1 scaffold_112 . exon 27249 27443 . - . ID=Phyra39983.1;Parent=Phyra39983;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 19348 20391 . + . ID=Phyra84384;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000009;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 19348 20391 . + . ID=Phyra84384;Parent=Phyra84384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 19348 20391 . + 0 ID=Phyra84384;Parent=Phyra84384;rank=1 scaffold_112 . exon 19348 20391 . + . ID=Phyra84384.1;Parent=Phyra84384;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 20643 21971 . + . ID=Phyra84385;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000010;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 20643 21971 . + . ID=Phyra84385;Parent=Phyra84385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 20643 21971 . + 0 ID=Phyra84385;Parent=Phyra84385;rank=1 scaffold_112 . exon 20643 21971 . + . ID=Phyra84385.1;Parent=Phyra84385;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 22966 24291 . - . ID=Phyra84386;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000011;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 22966 24291 . - . ID=Phyra84386;Parent=Phyra84386;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 22966 24291 . - 0 ID=Phyra84386;Parent=Phyra84386;rank=1 scaffold_112 . exon 22966 24291 . - . ID=Phyra84386.1;Parent=Phyra84386;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 27971 28672 . - . ID=Phyra84388;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000013;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 27971 28672 . - . ID=Phyra84388;Parent=Phyra84388;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 27971 28672 . - 0 ID=Phyra84388;Parent=Phyra84388;rank=1 scaffold_112 . exon 27971 28672 . - . ID=Phyra84388.1;Parent=Phyra84388;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 24545 26979 . + . ID=Phyra96839;biotype=protein_coding;external_name=C_scaffold_112000002;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 24545 26979 . + . ID=Phyra96839;Parent=Phyra96839;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 24545 24752 . + 0 ID=Phyra96839;Parent=Phyra96839;rank=1 scaffold_112 . exon 24545 24752 . + . ID=Phyra96839.1;Parent=Phyra96839;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_112 . CDS 25032 25086 . + 0 ID=Phyra96839;Parent=Phyra96839;rank=2 scaffold_112 . exon 25032 25086 . + . ID=Phyra96839.2;Parent=Phyra96839;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_112 . CDS 25158 25215 . + 0 ID=Phyra96839;Parent=Phyra96839;rank=3 scaffold_112 . exon 25158 25215 . + . ID=Phyra96839.3;Parent=Phyra96839;constitutive=1;ensembl_phase=2;rank=3 scaffold_112 . CDS 25291 25444 . + 0 ID=Phyra96839;Parent=Phyra96839;rank=4 scaffold_112 . exon 25291 25444 . + . ID=Phyra96839.4;Parent=Phyra96839;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_112 . CDS 25667 25822 . + 0 ID=Phyra96839;Parent=Phyra96839;rank=5 scaffold_112 . exon 25667 25822 . + . ID=Phyra96839.5;Parent=Phyra96839;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_112 . CDS 25934 25969 . + 0 ID=Phyra96839;Parent=Phyra96839;rank=6 scaffold_112 . exon 25934 25969 . + . ID=Phyra96839.6;Parent=Phyra96839;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_112 . CDS 25994 26979 . + 0 ID=Phyra96839;Parent=Phyra96839;rank=7 scaffold_112 . exon 25994 26979 . + . ID=Phyra96839.7;Parent=Phyra96839;constitutive=1;ensembl_phase=1;rank=7 scaffold_112 . repeat_region 31355 31418 . ? . description=trf scaffold_112 ensembl protein_coding_gene 30343 30705 . + . ID=Phyra84389;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000014;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 30343 30705 . + . ID=Phyra84389;Parent=Phyra84389;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 30343 30705 . + 0 ID=Phyra84389;Parent=Phyra84389;rank=1 scaffold_112 . exon 30343 30705 . + . ID=Phyra84389.1;Parent=Phyra84389;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 31229 31705 . + . ID=Phyra84390;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000015;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 31229 31705 . + . ID=Phyra84390;Parent=Phyra84390;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 31229 31705 . + 0 ID=Phyra84390;Parent=Phyra84390;rank=1 scaffold_112 . exon 31229 31705 . + . ID=Phyra84390.1;Parent=Phyra84390;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 32243 32671 . - . ID=Phyra84391;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000016;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 32243 32671 . - . ID=Phyra84391;Parent=Phyra84391;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 32243 32671 . - 0 ID=Phyra84391;Parent=Phyra84391;rank=1 scaffold_112 . exon 32243 32671 . - . ID=Phyra84391.1;Parent=Phyra84391;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 34673 35314 . + . ID=Phyra84392;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000017;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 34673 35314 . + . ID=Phyra84392;Parent=Phyra84392;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 34673 35314 . + 0 ID=Phyra84392;Parent=Phyra84392;rank=1 scaffold_112 . exon 34673 35314 . + . ID=Phyra84392.1;Parent=Phyra84392;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 37281 37868 . + . ID=Phyra84393;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000018;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 37281 37868 . + . ID=Phyra84393;Parent=Phyra84393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 37281 37868 . + 0 ID=Phyra84393;Parent=Phyra84393;rank=1 scaffold_112 . exon 37281 37868 . + . ID=Phyra84393.1;Parent=Phyra84393;constitutive=1;rank=1 scaffold_112 . biological_region 37629 37632 0.999 - . logic_name=eponine scaffold_112 . biological_region 37684 37688 0.999 + . logic_name=eponine scaffold_112 . repeat_region 42571 42578 . ? . description=dust scaffold_112 . biological_region 45619 45620 0.999 - . logic_name=eponine scaffold_112 . biological_region 46390 46391 0.999 + . logic_name=eponine scaffold_112 . biological_region 46425 46428 0.999 - . logic_name=eponine scaffold_112 ensembl protein_coding_gene 39438 40329 . - . ID=Phyra84394;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000019;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 39438 40329 . - . ID=Phyra84394;Parent=Phyra84394;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 39438 39446 . - 0 ID=Phyra84394;Parent=Phyra84394;rank=2 scaffold_112 . exon 39438 39446 . - . ID=Phyra84394.2;Parent=Phyra84394;constitutive=1;rank=2 scaffold_112 . CDS 39772 40329 . - 0 ID=Phyra84394;Parent=Phyra84394;rank=1 scaffold_112 . exon 39772 40329 . - . ID=Phyra84394.1;Parent=Phyra84394;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 43476 45245 . + . ID=Phyra84395;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000020;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 43476 45245 . + . ID=Phyra84395;Parent=Phyra84395;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 43476 45245 . + 0 ID=Phyra84395;Parent=Phyra84395;rank=1 scaffold_112 . exon 43476 45245 . + . ID=Phyra84395.1;Parent=Phyra84395;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 45318 47355 . - . ID=Phyra96842;biotype=protein_coding;external_name=C_scaffold_112000005;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 45318 47355 . - . ID=Phyra96842;Parent=Phyra96842;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 45318 46124 . - 0 ID=Phyra96842;Parent=Phyra96842;rank=4 scaffold_112 . exon 45318 46124 . - . ID=Phyra96842.4;Parent=Phyra96842;constitutive=1;rank=4 scaffold_112 . CDS 46149 46560 . - 0 ID=Phyra96842;Parent=Phyra96842;rank=3 scaffold_112 . exon 46149 46560 . - . ID=Phyra96842.3;Parent=Phyra96842;constitutive=1;ensembl_phase=2;rank=3 scaffold_112 . CDS 46832 46928 . - 0 ID=Phyra96842;Parent=Phyra96842;rank=2 scaffold_112 . CDS 47034 47355 . - 0 ID=Phyra96842;Parent=Phyra96842;rank=1 scaffold_112 ensembl protein_coding_gene 48048 48452 . - . ID=Phyra84397;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000022;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 48048 48452 . - . ID=Phyra84397;Parent=Phyra84397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 48048 48452 . - 0 ID=Phyra84397;Parent=Phyra84397;rank=1 scaffold_112 . exon 48048 48452 . - . ID=Phyra84397.1;Parent=Phyra84397;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 49115 49615 . - . ID=Phyra84398;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000023;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 49115 49615 . - . ID=Phyra84398;Parent=Phyra84398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 49115 49615 . - 0 ID=Phyra84398;Parent=Phyra84398;rank=1 scaffold_112 . exon 49115 49615 . - . ID=Phyra84398.1;Parent=Phyra84398;constitutive=1;rank=1 scaffold_112 . exon 46832 46928 . - . ID=Phyra96842.2;Parent=Phyra96842;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_112 . exon 47034 47355 . - . ID=Phyra96842.1;Parent=Phyra96842;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_112 . biological_region 59642 59645 0.999 - . logic_name=eponine scaffold_112 . biological_region 63075 63078 0.999 + . logic_name=eponine scaffold_112 . biological_region 65301 65304 0.999 - . logic_name=eponine scaffold_112 ensembl protein_coding_gene 59336 61597 . + . ID=Phyra84399;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000024;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 59336 61597 . + . ID=Phyra84399;Parent=Phyra84399;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 59336 61597 . + 0 ID=Phyra84399;Parent=Phyra84399;rank=1 scaffold_112 . exon 59336 61597 . + . ID=Phyra84399.1;Parent=Phyra84399;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 61721 63698 . - . ID=Phyra84400;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000025;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 61721 63698 . - . ID=Phyra84400;Parent=Phyra84400;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 61721 63200 . - 0 ID=Phyra84400;Parent=Phyra84400;rank=2 scaffold_112 . exon 61721 63200 . - . ID=Phyra84400.2;Parent=Phyra84400;constitutive=1;ensembl_phase=2;rank=2 scaffold_112 . CDS 63274 63698 . - 0 ID=Phyra84400;Parent=Phyra84400;rank=1 scaffold_112 . exon 63274 63698 . - . ID=Phyra84400.1;Parent=Phyra84400;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 . repeat_region 71195 71213 . ? . description=dust scaffold_112 ensembl protein_coding_gene 66674 68262 . + . ID=Phyra39985;biotype=protein_coding;external_name=gwEuk.112.8.1;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 66674 68262 . + . ID=Phyra39985;Parent=Phyra39985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 66674 67186 . + 0 ID=Phyra39985;Parent=Phyra39985;rank=1 scaffold_112 . exon 66674 67186 . + . ID=Phyra39985.1;Parent=Phyra39985;constitutive=1;rank=1 scaffold_112 . CDS 67255 67361 . + 0 ID=Phyra39985;Parent=Phyra39985;rank=2 scaffold_112 . exon 67255 67361 . + . ID=Phyra39985.2;Parent=Phyra39985;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_112 . CDS 67431 67560 . + 0 ID=Phyra39985;Parent=Phyra39985;rank=3 scaffold_112 . exon 67431 67560 . + . ID=Phyra39985.3;Parent=Phyra39985;constitutive=1;ensembl_phase=2;rank=3 scaffold_112 . CDS 67627 67866 . + 0 ID=Phyra39985;Parent=Phyra39985;rank=4 scaffold_112 . exon 67627 67866 . + . ID=Phyra39985.4;Parent=Phyra39985;constitutive=1;rank=4 scaffold_112 . CDS 67930 67998 . + 0 ID=Phyra39985;Parent=Phyra39985;rank=5 scaffold_112 . exon 67930 67998 . + . ID=Phyra39985.5;Parent=Phyra39985;constitutive=1;rank=5 scaffold_112 . CDS 68068 68262 . + 0 ID=Phyra39985;Parent=Phyra39985;rank=6 scaffold_112 . exon 68068 68262 . + . ID=Phyra39985.6;Parent=Phyra39985;constitutive=1;rank=6 scaffold_112 ensembl protein_coding_gene 69864 70619 . - . ID=Phyra72226;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_112000003;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 69864 70619 . - . ID=Phyra72226;Parent=Phyra72226;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 69864 70619 . - 0 ID=Phyra72226;Parent=Phyra72226;rank=1 scaffold_112 . exon 69864 70619 . - . ID=Phyra72226.1;Parent=Phyra72226;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 71669 74656 . + . ID=Phyra84403;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000028;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 71669 74656 . + . ID=Phyra84403;Parent=Phyra84403;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 71669 71925 . + 0 ID=Phyra84403;Parent=Phyra84403;rank=1 scaffold_112 . exon 71669 71925 . + . ID=Phyra84403.1;Parent=Phyra84403;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 . CDS 72003 72222 . + 0 ID=Phyra84403;Parent=Phyra84403;rank=2 scaffold_112 . exon 72003 72222 . + . ID=Phyra84403.2;Parent=Phyra84403;constitutive=1;ensembl_phase=2;rank=2 scaffold_112 . CDS 72381 72467 . + 0 ID=Phyra84403;Parent=Phyra84403;rank=3 scaffold_112 . exon 72381 72467 . + . ID=Phyra84403.3;Parent=Phyra84403;constitutive=1;rank=3 scaffold_112 . CDS 72537 72914 . + 0 ID=Phyra84403;Parent=Phyra84403;rank=4 scaffold_112 . exon 72537 72914 . + . ID=Phyra84403.4;Parent=Phyra84403;constitutive=1;rank=4 scaffold_112 . CDS 73070 74656 . + 0 ID=Phyra84403;Parent=Phyra84403;rank=5 scaffold_112 . exon 73070 74656 . + . ID=Phyra84403.5;Parent=Phyra84403;constitutive=1;rank=5 scaffold_112 ensembl protein_coding_gene 79177 80691 . - . ID=Phyra84404;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000029;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 79177 80691 . - . ID=Phyra84404;Parent=Phyra84404;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 79177 80691 . - 0 ID=Phyra84404;Parent=Phyra84404;rank=1 scaffold_112 . exon 79177 80691 . - . ID=Phyra84404.1;Parent=Phyra84404;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 81880 82824 . + . ID=Phyra84405;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000030;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 81880 82824 . + . ID=Phyra84405;Parent=Phyra84405;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 81880 82824 . + 0 ID=Phyra84405;Parent=Phyra84405;rank=1 scaffold_112 . exon 81880 82824 . + . ID=Phyra84405.1;Parent=Phyra84405;constitutive=1;rank=1 scaffold_112 . repeat_region 87480 87535 . ? . description=trf scaffold_112 . biological_region 87726 87727 0.999 - . logic_name=eponine scaffold_112 . repeat_region 89977 89996 . ? . description=trf scaffold_112 . biological_region 91865 91865 0.999 + . logic_name=eponine scaffold_112 . biological_region 91987 91990 0.999 + . logic_name=eponine scaffold_112 . biological_region 92284 92287 0.999 + . logic_name=eponine scaffold_112 . biological_region 92653 92657 0.999 + . logic_name=eponine scaffold_112 . biological_region 92754 92759 0.999 - . logic_name=eponine scaffold_112 . biological_region 92774 92779 0.999 - . logic_name=eponine scaffold_112 . biological_region 92828 92833 0.999 + . logic_name=eponine scaffold_112 ensembl protein_coding_gene 86693 87885 . - . ID=Phyra40005;biotype=protein_coding;external_name=gwEuk.112.28.1;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 86693 87885 . - . ID=Phyra40005;Parent=Phyra40005;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 86693 86837 . - 0 ID=Phyra40005;Parent=Phyra40005;rank=3 scaffold_112 . exon 86693 86837 . - . ID=Phyra40005.3;Parent=Phyra40005;constitutive=1;ensembl_phase=2;rank=3 scaffold_112 . CDS 86906 87748 . - 0 ID=Phyra40005;Parent=Phyra40005;rank=2 scaffold_112 . exon 86906 87748 . - . ID=Phyra40005.2;Parent=Phyra40005;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_112 . CDS 87797 87885 . - 0 ID=Phyra40005;Parent=Phyra40005;rank=1 scaffold_112 . exon 87797 87885 . - . ID=Phyra40005.1;Parent=Phyra40005;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 ensembl protein_coding_gene 84079 86042 . - . ID=Phyra84406;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000031;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 84079 86042 . - . ID=Phyra84406;Parent=Phyra84406;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 84079 84830 . - 0 ID=Phyra84406;Parent=Phyra84406;rank=7 scaffold_112 . exon 84079 84830 . - . ID=Phyra84406.7;Parent=Phyra84406;constitutive=1;ensembl_phase=1;rank=7 scaffold_112 . CDS 84924 85037 . - 0 ID=Phyra84406;Parent=Phyra84406;rank=6 scaffold_112 . exon 84924 85037 . - . ID=Phyra84406.6;Parent=Phyra84406;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_112 . CDS 85208 85246 . - 0 ID=Phyra84406;Parent=Phyra84406;rank=5 scaffold_112 . exon 85208 85246 . - . ID=Phyra84406.5;Parent=Phyra84406;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_112 . CDS 85314 85423 . - 0 ID=Phyra84406;Parent=Phyra84406;rank=4 scaffold_112 . exon 85314 85423 . - . ID=Phyra84406.4;Parent=Phyra84406;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_112 . CDS 85490 85689 . - 0 ID=Phyra84406;Parent=Phyra84406;rank=3 scaffold_112 . exon 85490 85689 . - . ID=Phyra84406.3;Parent=Phyra84406;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_112 . CDS 85753 85850 . - 0 ID=Phyra84406;Parent=Phyra84406;rank=2 scaffold_112 . exon 85753 85850 . - . ID=Phyra84406.2;Parent=Phyra84406;constitutive=1;ensembl_phase=1;rank=2 scaffold_112 . CDS 85913 86042 . - 0 ID=Phyra84406;Parent=Phyra84406;rank=1 scaffold_112 . exon 85913 86042 . - . ID=Phyra84406.1;Parent=Phyra84406;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_112 . repeat_region 99588 101360 . ? . description=dust scaffold_112 . biological_region 103883 103885 0.999 - . logic_name=eponine scaffold_112 . biological_region 104129 104131 0.999 - . logic_name=eponine scaffold_112 . biological_region 106522 106523 0.999 - . logic_name=eponine scaffold_112 . biological_region 111346 111348 0.999 - . logic_name=eponine scaffold_112 . repeat_region 111619 111639 . ? . description=trf scaffold_112 ensembl protein_coding_gene 107030 108420 . - . ID=Phyra40011;biotype=protein_coding;external_name=gwEuk.112.34.1;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 107030 108420 . - . ID=Phyra40011;Parent=Phyra40011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 107030 107140 . - 0 ID=Phyra40011;Parent=Phyra40011;rank=4 scaffold_112 . exon 107030 107140 . - . ID=Phyra40011.4;Parent=Phyra40011;constitutive=1;rank=4 scaffold_112 . CDS 107229 107493 . - 0 ID=Phyra40011;Parent=Phyra40011;rank=3 scaffold_112 . exon 107229 107493 . - . ID=Phyra40011.3;Parent=Phyra40011;constitutive=1;ensembl_phase=2;rank=3 scaffold_112 . CDS 107565 108177 . - 0 ID=Phyra40011;Parent=Phyra40011;rank=2 scaffold_112 . exon 107565 108177 . - . ID=Phyra40011.2;Parent=Phyra40011;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_112 . CDS 108285 108420 . - 0 ID=Phyra40011;Parent=Phyra40011;rank=1 scaffold_112 . exon 108285 108420 . - . ID=Phyra40011.1;Parent=Phyra40011;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_112 ensembl protein_coding_gene 104350 105644 . - . ID=Phyra84408;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000033;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 104350 105644 . - . ID=Phyra84408;Parent=Phyra84408;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 104350 104354 . - 0 ID=Phyra84408;Parent=Phyra84408;rank=5 scaffold_112 . exon 104350 104354 . - . ID=Phyra84408.5;Parent=Phyra84408;constitutive=1;ensembl_phase=1;rank=5 scaffold_112 . CDS 104438 104585 . - 0 ID=Phyra84408;Parent=Phyra84408;rank=4 scaffold_112 . exon 104438 104585 . - . ID=Phyra84408.4;Parent=Phyra84408;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_112 . CDS 104653 104834 . - 0 ID=Phyra84408;Parent=Phyra84408;rank=3 scaffold_112 . exon 104653 104834 . - . ID=Phyra84408.3;Parent=Phyra84408;constitutive=1;ensembl_phase=1;rank=3 scaffold_112 . CDS 104916 105392 . - 0 ID=Phyra84408;Parent=Phyra84408;rank=2 scaffold_112 . exon 104916 105392 . - . ID=Phyra84408.2;Parent=Phyra84408;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_112 . CDS 105467 105644 . - 0 ID=Phyra84408;Parent=Phyra84408;rank=1 scaffold_112 . exon 105467 105644 . - . ID=Phyra84408.1;Parent=Phyra84408;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_112 ensembl protein_coding_gene 105856 106930 . + . ID=Phyra84409;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000034;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 105856 106930 . + . ID=Phyra84409;Parent=Phyra84409;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 105856 105883 . + 0 ID=Phyra84409;Parent=Phyra84409;rank=1 scaffold_112 . exon 105856 105883 . + . ID=Phyra84409.1;Parent=Phyra84409;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_112 . CDS 105963 106930 . + 0 ID=Phyra84409;Parent=Phyra84409;rank=2 scaffold_112 . exon 105963 106930 . + . ID=Phyra84409.2;Parent=Phyra84409;constitutive=1;ensembl_phase=1;rank=2 scaffold_112 ensembl protein_coding_gene 108587 109969 . + . ID=Phyra84411;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000036;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 108587 109969 . + . ID=Phyra84411;Parent=Phyra84411;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 108587 109143 . + 0 ID=Phyra84411;Parent=Phyra84411;rank=1 scaffold_112 . exon 108587 109143 . + . ID=Phyra84411.1;Parent=Phyra84411;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 . CDS 109207 109338 . + 0 ID=Phyra84411;Parent=Phyra84411;rank=2 scaffold_112 . exon 109207 109338 . + . ID=Phyra84411.2;Parent=Phyra84411;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_112 . CDS 109411 109445 . + 0 ID=Phyra84411;Parent=Phyra84411;rank=3 scaffold_112 . exon 109411 109445 . + . ID=Phyra84411.3;Parent=Phyra84411;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_112 . CDS 109512 109969 . + 0 ID=Phyra84411;Parent=Phyra84411;rank=4 scaffold_112 . exon 109512 109969 . + . ID=Phyra84411.4;Parent=Phyra84411;constitutive=1;ensembl_phase=1;rank=4 scaffold_112 ensembl protein_coding_gene 110285 111709 . + . ID=Phyra84412;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000037;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 110285 111709 . + . ID=Phyra84412;Parent=Phyra84412;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 110285 111709 . + 0 ID=Phyra84412;Parent=Phyra84412;rank=1 scaffold_112 . exon 110285 111709 . + . ID=Phyra84412.1;Parent=Phyra84412;constitutive=1;rank=1 scaffold_112 . repeat_region 112108 114860 . ? . description=dust scaffold_112 . repeat_region 115256 115313 . ? . description=dust scaffold_112 . repeat_region 117172 117545 . ? . description=dust scaffold_112 ensembl protein_coding_gene 114979 115356 . + . ID=Phyra84413;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000038;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 114979 115356 . + . ID=Phyra84413;Parent=Phyra84413;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 114979 115356 . + 0 ID=Phyra84413;Parent=Phyra84413;rank=1 scaffold_112 . exon 114979 115356 . + . ID=Phyra84413.1;Parent=Phyra84413;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 120391 122556 . + . ID=Phyra84414;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000039;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 120391 122556 . + . ID=Phyra84414;Parent=Phyra84414;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 120391 122556 . + 0 ID=Phyra84414;Parent=Phyra84414;rank=1 scaffold_112 . exon 120391 122556 . + . ID=Phyra84414.1;Parent=Phyra84414;constitutive=1;rank=1 scaffold_112 . biological_region 122851 122856 0.999 + . logic_name=eponine scaffold_112 . biological_region 123739 123745 0.999 + . logic_name=eponine scaffold_112 . biological_region 123783 123788 0.999 - . logic_name=eponine scaffold_112 . biological_region 123860 123861 0.999 + . logic_name=eponine scaffold_112 . repeat_region 125630 125702 . ? . description=trf scaffold_112 . repeat_region 125657 125710 . ? . description=trf scaffold_112 . biological_region 126885 126886 0.999 + . logic_name=eponine scaffold_112 . biological_region 126966 126966 0.999 + . logic_name=eponine scaffold_112 . biological_region 127055 127057 0.999 - . logic_name=eponine scaffold_112 . biological_region 127995 127997 0.999 + . logic_name=eponine scaffold_112 . biological_region 130373 130378 0.999 - . logic_name=eponine scaffold_112 . repeat_region 130422 130441 . ? . description=trf scaffold_112 . biological_region 130467 130468 0.999 - . logic_name=eponine scaffold_112 . biological_region 130655 130661 0.999 - . logic_name=eponine scaffold_112 . biological_region 130670 130674 0.999 + . logic_name=eponine scaffold_112 ensembl protein_coding_gene 123652 124748 . + . ID=Phyra84415;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000040;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 123652 124748 . + . ID=Phyra84415;Parent=Phyra84415;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 123652 124004 . + 0 ID=Phyra84415;Parent=Phyra84415;rank=1 scaffold_112 . exon 123652 124004 . + . ID=Phyra84415.1;Parent=Phyra84415;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 . CDS 124082 124748 . + 0 ID=Phyra84415;Parent=Phyra84415;rank=2 scaffold_112 . exon 124082 124748 . + . ID=Phyra84415.2;Parent=Phyra84415;constitutive=1;ensembl_phase=2;rank=2 scaffold_112 ensembl protein_coding_gene 125542 127116 . - . ID=Phyra84416;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000041;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 125542 127116 . - . ID=Phyra84416;Parent=Phyra84416;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 125542 127116 . - 0 ID=Phyra84416;Parent=Phyra84416;rank=1 scaffold_112 . exon 125542 127116 . - . ID=Phyra84416.1;Parent=Phyra84416;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 127423 127743 . + . ID=Phyra84417;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000042;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 127423 127743 . + . ID=Phyra84417;Parent=Phyra84417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 127423 127743 . + 0 ID=Phyra84417;Parent=Phyra84417;rank=1 scaffold_112 . exon 127423 127743 . + . ID=Phyra84417.1;Parent=Phyra84417;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 128107 129240 . - . ID=Phyra84418;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000043;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 128107 129240 . - . ID=Phyra84418;Parent=Phyra84418;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 128107 128150 . - 0 ID=Phyra84418;Parent=Phyra84418;rank=7 scaffold_112 . exon 128107 128150 . - . ID=Phyra84418.7;Parent=Phyra84418;constitutive=1;ensembl_phase=1;rank=7 scaffold_112 . CDS 128223 128328 . - 0 ID=Phyra84418;Parent=Phyra84418;rank=6 scaffold_112 . exon 128223 128328 . - . ID=Phyra84418.6;Parent=Phyra84418;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_112 . CDS 128483 128678 . - 0 ID=Phyra84418;Parent=Phyra84418;rank=5 scaffold_112 . exon 128483 128678 . - . ID=Phyra84418.5;Parent=Phyra84418;constitutive=1;ensembl_phase=2;rank=5 scaffold_112 . CDS 128737 128833 . - 0 ID=Phyra84418;Parent=Phyra84418;rank=4 scaffold_112 . exon 128737 128833 . - . ID=Phyra84418.4;Parent=Phyra84418;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_112 . CDS 128894 128987 . - 0 ID=Phyra84418;Parent=Phyra84418;rank=3 scaffold_112 . exon 128894 128987 . - . ID=Phyra84418.3;Parent=Phyra84418;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_112 . CDS 129072 129146 . - 0 ID=Phyra84418;Parent=Phyra84418;rank=2 scaffold_112 . exon 129072 129146 . - . ID=Phyra84418.2;Parent=Phyra84418;constitutive=1;rank=2 scaffold_112 . CDS 129205 129240 . - 0 ID=Phyra84418;Parent=Phyra84418;rank=1 scaffold_112 . exon 129205 129240 . - . ID=Phyra84418.1;Parent=Phyra84418;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 130303 132057 . + . ID=Phyra84419;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000044;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 130303 132057 . + . ID=Phyra84419;Parent=Phyra84419;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 130303 132057 . + 0 ID=Phyra84419;Parent=Phyra84419;rank=1 scaffold_112 . exon 130303 132057 . + . ID=Phyra84419.1;Parent=Phyra84419;constitutive=1;rank=1 scaffold_112 . repeat_region 137038 137343 . + . description=GypsyPi-1c_LTR scaffold_112 ensembl protein_coding_gene 132221 133168 . + . ID=Phyra84420;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000045;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 132221 133168 . + . ID=Phyra84420;Parent=Phyra84420;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 132221 132327 . + 0 ID=Phyra84420;Parent=Phyra84420;rank=1 scaffold_112 . exon 132221 132327 . + . ID=Phyra84420.1;Parent=Phyra84420;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 . CDS 132389 132449 . + 0 ID=Phyra84420;Parent=Phyra84420;rank=2 scaffold_112 . exon 132389 132449 . + . ID=Phyra84420.2;Parent=Phyra84420;constitutive=1;ensembl_phase=2;rank=2 scaffold_112 . CDS 132520 132616 . + 0 ID=Phyra84420;Parent=Phyra84420;rank=3 scaffold_112 . exon 132520 132616 . + . ID=Phyra84420.3;Parent=Phyra84420;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_112 . CDS 132684 132959 . + 0 ID=Phyra84420;Parent=Phyra84420;rank=4 scaffold_112 . exon 132684 132959 . + . ID=Phyra84420.4;Parent=Phyra84420;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_112 . CDS 133029 133168 . + 0 ID=Phyra84420;Parent=Phyra84420;rank=5 scaffold_112 . exon 133029 133168 . + . ID=Phyra84420.5;Parent=Phyra84420;constitutive=1;ensembl_phase=1;rank=5 scaffold_112 ensembl protein_coding_gene 133513 136313 . - . ID=Phyra84421;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_112000046;logic_name=jgi_phyra1 scaffold_112 ensembl transcript 133513 136313 . - . ID=Phyra84421;Parent=Phyra84421;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_112 . CDS 133513 133953 . - 0 ID=Phyra84421;Parent=Phyra84421;rank=8 scaffold_112 . exon 133513 133953 . - . ID=Phyra84421.8;Parent=Phyra84421;constitutive=1;rank=8 scaffold_112 . CDS 134027 134086 . - 0 ID=Phyra84421;Parent=Phyra84421;rank=7 scaffold_112 . exon 134027 134086 . - . ID=Phyra84421.7;Parent=Phyra84421;constitutive=1;rank=7 scaffold_112 . CDS 134141 134275 . - 0 ID=Phyra84421;Parent=Phyra84421;rank=6 scaffold_112 . exon 134141 134275 . - . ID=Phyra84421.6;Parent=Phyra84421;constitutive=1;rank=6 scaffold_112 . CDS 134347 134523 . - 0 ID=Phyra84421;Parent=Phyra84421;rank=5 scaffold_112 . exon 134347 134523 . - . ID=Phyra84421.5;Parent=Phyra84421;constitutive=1;rank=5 scaffold_112 . CDS 134595 135561 . - 0 ID=Phyra84421;Parent=Phyra84421;rank=4 scaffold_112 . exon 134595 135561 . - . ID=Phyra84421.4;Parent=Phyra84421;constitutive=1;ensembl_phase=2;rank=4 scaffold_112 . CDS 135629 135672 . - 0 ID=Phyra84421;Parent=Phyra84421;rank=3 scaffold_112 . exon 135629 135672 . - . ID=Phyra84421.3;Parent=Phyra84421;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_112 . CDS 135747 136142 . - 0 ID=Phyra84421;Parent=Phyra84421;rank=2 scaffold_112 . exon 135747 136142 . - . ID=Phyra84421.2;Parent=Phyra84421;constitutive=1;rank=2 scaffold_112 . CDS 136215 136313 . - 0 ID=Phyra84421;Parent=Phyra84421;rank=1 scaffold_112 . exon 136215 136313 . - . ID=Phyra84421.1;Parent=Phyra84421;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_110 1 144958 scaffold_110 . repeat_region 848 879 . ? . description=trf scaffold_110 . repeat_region 848 879 . ? . description=dust scaffold_110 . repeat_region 1242 2217 . ? . description=dust scaffold_110 . biological_region 2819 2825 0.999 + . logic_name=eponine scaffold_110 . biological_region 2857 2858 0.999 + . logic_name=eponine scaffold_110 . biological_region 2913 2917 0.999 + . logic_name=eponine scaffold_110 . biological_region 2967 2968 0.999 - . logic_name=eponine scaffold_110 . biological_region 3206 3211 0.999 + . logic_name=eponine scaffold_110 . biological_region 3303 3306 0.999 - . logic_name=eponine scaffold_110 . biological_region 3461 3462 0.999 - . logic_name=eponine scaffold_110 . repeat_region 4162 6359 . ? . description=dust scaffold_110 . biological_region 9211 9213 0.999 + . logic_name=eponine scaffold_110 . repeat_region 11619 11782 . + . description=GypsyPi-1c_I-int scaffold_110 . repeat_region 13953 15135 . + . description=GypsyPi-1c_I-int scaffold_110 . repeat_region 15144 34228 . ? . description=dust scaffold_110 . repeat_region 34831 34873 . ? . description=trf scaffold_110 . biological_region 36949 36950 0.999 - . logic_name=eponine scaffold_110 . repeat_region 37956 37999 . ? . description=trf scaffold_110 ensembl protein_coding_gene 34280 37192 . - . ID=Phyra84321;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000001;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 34280 37192 . - . ID=Phyra84321;Parent=Phyra84321;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 34280 34323 . - 0 ID=Phyra84321;Parent=Phyra84321;rank=3 scaffold_110 . exon 34280 34323 . - . ID=Phyra84321.3;Parent=Phyra84321;constitutive=1;ensembl_phase=1;rank=3 scaffold_110 . CDS 34359 34609 . - 0 ID=Phyra84321;Parent=Phyra84321;rank=2 scaffold_110 . exon 34359 34609 . - . ID=Phyra84321.2;Parent=Phyra84321;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_110 . CDS 34917 37192 . - 0 ID=Phyra84321;Parent=Phyra84321;rank=1 scaffold_110 . exon 34917 37192 . - . ID=Phyra84321.1;Parent=Phyra84321;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_110 ensembl protein_coding_gene 38169 40417 . - . ID=Phyra84322;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000002;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 38169 40417 . - . ID=Phyra84322;Parent=Phyra84322;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 38169 38350 . - 0 ID=Phyra84322;Parent=Phyra84322;rank=4 scaffold_110 . exon 38169 38350 . - . ID=Phyra84322.4;Parent=Phyra84322;constitutive=1;ensembl_phase=1;rank=4 scaffold_110 . CDS 38460 39188 . - 0 ID=Phyra84322;Parent=Phyra84322;rank=3 scaffold_110 . exon 38460 39188 . - . ID=Phyra84322.3;Parent=Phyra84322;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_110 . CDS 39256 40255 . - 0 ID=Phyra84322;Parent=Phyra84322;rank=2 scaffold_110 . CDS 40346 40417 . - 0 ID=Phyra84322;Parent=Phyra84322;rank=1 scaffold_110 . repeat_region 43200 43342 . - . description=GypsyPi-1c_LTR scaffold_110 ensembl protein_coding_gene 47727 48167 . + . ID=Phyra72217;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_110000001;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 47727 48167 . + . ID=Phyra72217;Parent=Phyra72217;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 47727 48167 . + 0 ID=Phyra72217;Parent=Phyra72217;rank=1 scaffold_110 . exon 47727 48167 . + . ID=Phyra72217.1;Parent=Phyra72217;constitutive=1;rank=1 scaffold_110 . exon 39256 40255 . - . ID=Phyra84322.2;Parent=Phyra84322;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_110 . exon 40346 40417 . - . ID=Phyra84322.1;Parent=Phyra84322;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 43738 45353 . + . ID=Phyra84323;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000003;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 43738 45353 . + . ID=Phyra84323;Parent=Phyra84323;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 43738 44571 . + 0 ID=Phyra84323;Parent=Phyra84323;rank=1 scaffold_110 . exon 43738 44571 . + . ID=Phyra84323.1;Parent=Phyra84323;constitutive=1;rank=1 scaffold_110 . CDS 44640 45353 . + 0 ID=Phyra84323;Parent=Phyra84323;rank=2 scaffold_110 . exon 44640 45353 . + . ID=Phyra84323.2;Parent=Phyra84323;constitutive=1;rank=2 scaffold_110 ensembl protein_coding_gene 46153 46971 . - . ID=Phyra84324;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000004;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 46153 46971 . - . ID=Phyra84324;Parent=Phyra84324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 46153 46971 . - 0 ID=Phyra84324;Parent=Phyra84324;rank=1 scaffold_110 . exon 46153 46971 . - . ID=Phyra84324.1;Parent=Phyra84324;constitutive=1;rank=1 scaffold_110 . biological_region 48741 48742 0.999 - . logic_name=eponine scaffold_110 . biological_region 48910 48916 0.999 + . logic_name=eponine scaffold_110 . biological_region 50214 50215 0.999 + . logic_name=eponine scaffold_110 . biological_region 50789 50791 0.999 + . logic_name=eponine scaffold_110 . biological_region 50882 50882 0.999 + . logic_name=eponine scaffold_110 . biological_region 51625 51629 0.999 + . logic_name=eponine scaffold_110 . repeat_region 51629 51665 . ? . description=trf scaffold_110 . repeat_region 52030 52091 . ? . description=dust scaffold_110 . repeat_region 52060 52084 . ? . description=trf scaffold_110 ensembl protein_coding_gene 48554 49924 . + . ID=Phyra72218;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_110000002;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 48554 49924 . + . ID=Phyra72218;Parent=Phyra72218;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 48554 49924 . + 0 ID=Phyra72218;Parent=Phyra72218;rank=1 scaffold_110 . exon 48554 49924 . + . ID=Phyra72218.1;Parent=Phyra72218;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 50150 51139 . + . ID=Phyra72219;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_110000003;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 50150 51139 . + . ID=Phyra72219;Parent=Phyra72219;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 50150 51139 . + 0 ID=Phyra72219;Parent=Phyra72219;rank=1 scaffold_110 . exon 50150 51139 . + . ID=Phyra72219.1;Parent=Phyra72219;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 57349 58911 . - . ID=Phyra84330;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000010;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 57349 58911 . - . ID=Phyra84330;Parent=Phyra84330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 57349 58911 . - 0 ID=Phyra84330;Parent=Phyra84330;rank=1 scaffold_110 . exon 57349 58911 . - . ID=Phyra84330.1;Parent=Phyra84330;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 51613 53084 . + . ID=Phyra96826;biotype=protein_coding;external_name=C_scaffold_110000002;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 51613 53084 . + . ID=Phyra96826;Parent=Phyra96826;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 51613 52628 . + 0 ID=Phyra96826;Parent=Phyra96826;rank=1 scaffold_110 . exon 51613 52628 . + . ID=Phyra96826.1;Parent=Phyra96826;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_110 . CDS 52818 52887 . + 0 ID=Phyra96826;Parent=Phyra96826;rank=2 scaffold_110 . exon 52818 52887 . + . ID=Phyra96826.2;Parent=Phyra96826;constitutive=1;ensembl_phase=2;rank=2 scaffold_110 . CDS 53037 53084 . + 0 ID=Phyra96826;Parent=Phyra96826;rank=3 scaffold_110 . exon 53037 53084 . + . ID=Phyra96826.3;Parent=Phyra96826;constitutive=1;rank=3 scaffold_110 ensembl protein_coding_gene 53334 54761 . - . ID=Phyra96827;biotype=protein_coding;external_name=C_scaffold_110000003;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 53334 54761 . - . ID=Phyra96827;Parent=Phyra96827;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 53334 53413 . - 0 ID=Phyra96827;Parent=Phyra96827;rank=4 scaffold_110 . exon 53334 53413 . - . ID=Phyra96827.4;Parent=Phyra96827;constitutive=1;ensembl_phase=1;rank=4 scaffold_110 . CDS 53486 54260 . - 0 ID=Phyra96827;Parent=Phyra96827;rank=3 scaffold_110 . exon 53486 54260 . - . ID=Phyra96827.3;Parent=Phyra96827;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_110 . CDS 54333 54514 . - 0 ID=Phyra96827;Parent=Phyra96827;rank=2 scaffold_110 . exon 54333 54514 . - . ID=Phyra96827.2;Parent=Phyra96827;constitutive=1;ensembl_phase=1;rank=2 scaffold_110 . CDS 54635 54761 . - 0 ID=Phyra96827;Parent=Phyra96827;rank=1 scaffold_110 . exon 54635 54761 . - . ID=Phyra96827.1;Parent=Phyra96827;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_110 ensembl protein_coding_gene 61048 65240 . - . ID=Phyra72220;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_110000004;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 61048 65240 . - . ID=Phyra72220;Parent=Phyra72220;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 61048 63094 . - 0 ID=Phyra72220;Parent=Phyra72220;rank=6 scaffold_110 . exon 61048 63094 . - . ID=Phyra72220.6;Parent=Phyra72220;constitutive=1;ensembl_phase=2;rank=6 scaffold_110 . CDS 63168 64252 . - 0 ID=Phyra72220;Parent=Phyra72220;rank=5 scaffold_110 . exon 63168 64252 . - . ID=Phyra72220.5;Parent=Phyra72220;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_110 . CDS 64439 64443 . - 0 ID=Phyra72220;Parent=Phyra72220;rank=4 scaffold_110 . exon 64439 64443 . - . ID=Phyra72220.4;Parent=Phyra72220;constitutive=1;ensembl_phase=1;rank=4 scaffold_110 . CDS 64599 64631 . - 0 ID=Phyra72220;Parent=Phyra72220;rank=3 scaffold_110 . exon 64599 64631 . - . ID=Phyra72220.3;Parent=Phyra72220;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_110 . CDS 64848 65080 . - 0 ID=Phyra72220;Parent=Phyra72220;rank=2 scaffold_110 . exon 64848 65080 . - . ID=Phyra72220.2;Parent=Phyra72220;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_110 . CDS 65170 65240 . - 0 ID=Phyra72220;Parent=Phyra72220;rank=1 scaffold_110 . exon 65170 65240 . - . ID=Phyra72220.1;Parent=Phyra72220;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_110 ensembl protein_coding_gene 65359 66940 . + . ID=Phyra84332;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000012;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 65359 66940 . + . ID=Phyra84332;Parent=Phyra84332;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 65359 66008 . + 0 ID=Phyra84332;Parent=Phyra84332;rank=1 scaffold_110 . exon 65359 66008 . + . ID=Phyra84332.1;Parent=Phyra84332;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_110 . CDS 66082 66209 . + 0 ID=Phyra84332;Parent=Phyra84332;rank=2 scaffold_110 . exon 66082 66209 . + . ID=Phyra84332.2;Parent=Phyra84332;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_110 . CDS 66275 66515 . + 0 ID=Phyra84332;Parent=Phyra84332;rank=3 scaffold_110 . exon 66275 66515 . + . ID=Phyra84332.3;Parent=Phyra84332;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_110 . CDS 66602 66789 . + 0 ID=Phyra84332;Parent=Phyra84332;rank=4 scaffold_110 . exon 66602 66789 . + . ID=Phyra84332.4;Parent=Phyra84332;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_110 . CDS 66837 66844 . + 0 ID=Phyra84332;Parent=Phyra84332;rank=5 scaffold_110 . exon 66837 66844 . + . ID=Phyra84332.5;Parent=Phyra84332;constitutive=1;ensembl_phase=1;rank=5 scaffold_110 . CDS 66908 66940 . + 0 ID=Phyra84332;Parent=Phyra84332;rank=6 scaffold_110 . exon 66908 66940 . + . ID=Phyra84332.6;Parent=Phyra84332;constitutive=1;rank=6 scaffold_110 ensembl protein_coding_gene 67001 72021 . - . ID=Phyra96832;biotype=protein_coding;external_name=C_scaffold_110000008;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 67001 72021 . - . ID=Phyra96832;Parent=Phyra96832;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 67001 67053 . - 0 ID=Phyra96832;Parent=Phyra96832;rank=10 scaffold_110 . exon 67001 67053 . - . ID=Phyra96832.10;Parent=Phyra96832;constitutive=1;ensembl_phase=1;rank=10 scaffold_110 . CDS 67080 67156 . - 0 ID=Phyra96832;Parent=Phyra96832;rank=9 scaffold_110 . exon 67080 67156 . - . ID=Phyra96832.9;Parent=Phyra96832;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_110 . CDS 67238 67748 . - 0 ID=Phyra96832;Parent=Phyra96832;rank=8 scaffold_110 . exon 67238 67748 . - . ID=Phyra96832.8;Parent=Phyra96832;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_110 . CDS 67893 67952 . - 0 ID=Phyra96832;Parent=Phyra96832;rank=7 scaffold_110 . CDS 68166 68576 . - 0 ID=Phyra96832;Parent=Phyra96832;rank=6 scaffold_110 . CDS 68625 68697 . - 0 ID=Phyra96832;Parent=Phyra96832;rank=5 scaffold_110 . CDS 69028 69233 . - 0 ID=Phyra96832;Parent=Phyra96832;rank=4 scaffold_110 . CDS 69909 71216 . - 0 ID=Phyra96832;Parent=Phyra96832;rank=3 scaffold_110 . CDS 71250 71521 . - 0 ID=Phyra96832;Parent=Phyra96832;rank=2 scaffold_110 . CDS 71606 72021 . - 0 ID=Phyra96832;Parent=Phyra96832;rank=1 scaffold_110 . biological_region 71102 71105 0.999 + . logic_name=eponine scaffold_110 . biological_region 71214 71215 0.999 - . logic_name=eponine scaffold_110 . biological_region 71292 71295 0.999 - . logic_name=eponine scaffold_110 ensembl protein_coding_gene 72378 74782 . + . ID=Phyra84334;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000014;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 72378 74782 . + . ID=Phyra84334;Parent=Phyra84334;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 72378 74693 . + 0 ID=Phyra84334;Parent=Phyra84334;rank=1 scaffold_110 . exon 72378 74693 . + . ID=Phyra84334.1;Parent=Phyra84334;constitutive=1;rank=1 scaffold_110 . CDS 74720 74782 . + 0 ID=Phyra84334;Parent=Phyra84334;rank=2 scaffold_110 . exon 74720 74782 . + . ID=Phyra84334.2;Parent=Phyra84334;constitutive=1;rank=2 scaffold_110 ensembl protein_coding_gene 75457 76251 . - . ID=Phyra84335;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000015;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 75457 76251 . - . ID=Phyra84335;Parent=Phyra84335;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 75457 76251 . - 0 ID=Phyra84335;Parent=Phyra84335;rank=1 scaffold_110 . exon 75457 76251 . - . ID=Phyra84335.1;Parent=Phyra84335;constitutive=1;rank=1 scaffold_110 . exon 67893 67952 . - . ID=Phyra96832.7;Parent=Phyra96832;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_110 . exon 68166 68576 . - . ID=Phyra96832.6;Parent=Phyra96832;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_110 . exon 68625 68697 . - . ID=Phyra96832.5;Parent=Phyra96832;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_110 . exon 69028 69233 . - . ID=Phyra96832.4;Parent=Phyra96832;constitutive=1;ensembl_phase=1;rank=4 scaffold_110 . exon 69909 71216 . - . ID=Phyra96832.3;Parent=Phyra96832;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_110 . exon 71250 71521 . - . ID=Phyra96832.2;Parent=Phyra96832;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_110 . exon 71606 72021 . - . ID=Phyra96832.1;Parent=Phyra96832;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_110 . repeat_region 77616 77695 . ? . description=dust scaffold_110 . repeat_region 84934 84953 . ? . description=trf scaffold_110 ensembl protein_coding_gene 77518 79377 . - . ID=Phyra84336;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000016;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 77518 79377 . - . ID=Phyra84336;Parent=Phyra84336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 77518 77551 . - 0 ID=Phyra84336;Parent=Phyra84336;rank=2 scaffold_110 . exon 77518 77551 . - . ID=Phyra84336.2;Parent=Phyra84336;constitutive=1;ensembl_phase=2;rank=2 scaffold_110 . CDS 77741 79377 . - 0 ID=Phyra84336;Parent=Phyra84336;rank=1 scaffold_110 . exon 77741 79377 . - . ID=Phyra84336.1;Parent=Phyra84336;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_110 ensembl protein_coding_gene 80203 82365 . + . ID=Phyra84337;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000017;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 80203 82365 . + . ID=Phyra84337;Parent=Phyra84337;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 80203 82365 . + 0 ID=Phyra84337;Parent=Phyra84337;rank=1 scaffold_110 . exon 80203 82365 . + . ID=Phyra84337.1;Parent=Phyra84337;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 83206 84777 . + . ID=Phyra84338;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000018;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 83206 84777 . + . ID=Phyra84338;Parent=Phyra84338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 83206 84777 . + 0 ID=Phyra84338;Parent=Phyra84338;rank=1 scaffold_110 . exon 83206 84777 . + . ID=Phyra84338.1;Parent=Phyra84338;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 85288 87180 . + . ID=Phyra84339;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000019;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 85288 87180 . + . ID=Phyra84339;Parent=Phyra84339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 85288 87180 . + 0 ID=Phyra84339;Parent=Phyra84339;rank=1 scaffold_110 . exon 85288 87180 . + . ID=Phyra84339.1;Parent=Phyra84339;constitutive=1;rank=1 scaffold_110 . biological_region 94053 94058 0.999 + . logic_name=eponine scaffold_110 . biological_region 94060 94062 0.999 - . logic_name=eponine scaffold_110 . biological_region 94073 94079 0.999 - . logic_name=eponine scaffold_110 . biological_region 94092 94099 0.999 - . logic_name=eponine scaffold_110 ensembl protein_coding_gene 87393 89130 . + . ID=Phyra84340;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000020;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 87393 89130 . + . ID=Phyra84340;Parent=Phyra84340;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 87393 88396 . + 0 ID=Phyra84340;Parent=Phyra84340;rank=1 scaffold_110 . exon 87393 88396 . + . ID=Phyra84340.1;Parent=Phyra84340;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_110 . CDS 88421 89068 . + 0 ID=Phyra84340;Parent=Phyra84340;rank=2 scaffold_110 . exon 88421 89068 . + . ID=Phyra84340.2;Parent=Phyra84340;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_110 . CDS 89124 89130 . + 0 ID=Phyra84340;Parent=Phyra84340;rank=3 scaffold_110 . exon 89124 89130 . + . ID=Phyra84340.3;Parent=Phyra84340;constitutive=1;ensembl_phase=2;rank=3 scaffold_110 ensembl protein_coding_gene 89465 91283 . - . ID=Phyra84341;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000021;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 89465 91283 . - . ID=Phyra84341;Parent=Phyra84341;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 89465 90438 . - 0 ID=Phyra84341;Parent=Phyra84341;rank=3 scaffold_110 . exon 89465 90438 . - . ID=Phyra84341.3;Parent=Phyra84341;constitutive=1;ensembl_phase=1;rank=3 scaffold_110 . CDS 90502 91162 . - 0 ID=Phyra84341;Parent=Phyra84341;rank=2 scaffold_110 . exon 90502 91162 . - . ID=Phyra84341.2;Parent=Phyra84341;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_110 . CDS 91218 91283 . - 0 ID=Phyra84341;Parent=Phyra84341;rank=1 scaffold_110 . exon 91218 91283 . - . ID=Phyra84341.1;Parent=Phyra84341;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 91758 93674 . + . ID=Phyra84342;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000022;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 91758 93674 . + . ID=Phyra84342;Parent=Phyra84342;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 91758 93674 . + 0 ID=Phyra84342;Parent=Phyra84342;rank=1 scaffold_110 . exon 91758 93674 . + . ID=Phyra84342.1;Parent=Phyra84342;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 93916 97070 . + . ID=Phyra96836;biotype=protein_coding;external_name=C_scaffold_110000012;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 93916 97070 . + . ID=Phyra96836;Parent=Phyra96836;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 93916 94195 . + 0 ID=Phyra96836;Parent=Phyra96836;rank=1 scaffold_110 . exon 93916 94195 . + . ID=Phyra96836.1;Parent=Phyra96836;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_110 . CDS 94270 94333 . + 0 ID=Phyra96836;Parent=Phyra96836;rank=2 scaffold_110 . exon 94270 94333 . + . ID=Phyra96836.2;Parent=Phyra96836;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_110 . CDS 94409 94604 . + 0 ID=Phyra96836;Parent=Phyra96836;rank=3 scaffold_110 . exon 94409 94604 . + . ID=Phyra96836.3;Parent=Phyra96836;constitutive=1;ensembl_phase=2;rank=3 scaffold_110 . CDS 94682 94759 . + 0 ID=Phyra96836;Parent=Phyra96836;rank=4 scaffold_110 . exon 94682 94759 . + . ID=Phyra96836.4;Parent=Phyra96836;constitutive=1;rank=4 scaffold_110 . CDS 94831 94899 . + 0 ID=Phyra96836;Parent=Phyra96836;rank=5 scaffold_110 . exon 94831 94899 . + . ID=Phyra96836.5;Parent=Phyra96836;constitutive=1;rank=5 scaffold_110 . CDS 94971 95015 . + 0 ID=Phyra96836;Parent=Phyra96836;rank=6 scaffold_110 . exon 94971 95015 . + . ID=Phyra96836.6;Parent=Phyra96836;constitutive=1;rank=6 scaffold_110 . CDS 95096 95383 . + 0 ID=Phyra96836;Parent=Phyra96836;rank=7 scaffold_110 . exon 95096 95383 . + . ID=Phyra96836.7;Parent=Phyra96836;constitutive=1;rank=7 scaffold_110 . CDS 95747 95941 . + 0 ID=Phyra96836;Parent=Phyra96836;rank=8 scaffold_110 . exon 95747 95941 . + . ID=Phyra96836.8;Parent=Phyra96836;constitutive=1;rank=8 scaffold_110 . CDS 96015 96149 . + 0 ID=Phyra96836;Parent=Phyra96836;rank=9 scaffold_110 . exon 96015 96149 . + . ID=Phyra96836.9;Parent=Phyra96836;constitutive=1;rank=9 scaffold_110 . CDS 96236 96673 . + 0 ID=Phyra96836;Parent=Phyra96836;rank=10 scaffold_110 . exon 96236 96673 . + . ID=Phyra96836.10;Parent=Phyra96836;constitutive=1;rank=10 scaffold_110 . CDS 96749 96874 . + 0 ID=Phyra96836;Parent=Phyra96836;rank=11 scaffold_110 . CDS 96945 97070 . + 0 ID=Phyra96836;Parent=Phyra96836;rank=12 scaffold_110 . repeat_region 105391 105411 . ? . description=trf scaffold_110 . repeat_region 105391 105411 . ? . description=dust scaffold_110 ensembl protein_coding_gene 104190 105344 . - . ID=Phyra39928;biotype=protein_coding;external_name=gwEuk.110.25.1;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 104190 105344 . - . ID=Phyra39928;Parent=Phyra39928;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 104190 104521 . - 0 ID=Phyra39928;Parent=Phyra39928;rank=6 scaffold_110 . exon 104190 104521 . - . ID=Phyra39928.6;Parent=Phyra39928;constitutive=1;ensembl_phase=1;rank=6 scaffold_110 . CDS 104596 104697 . - 0 ID=Phyra39928;Parent=Phyra39928;rank=5 scaffold_110 . exon 104596 104697 . - . ID=Phyra39928.5;Parent=Phyra39928;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_110 . CDS 104780 104834 . - 0 ID=Phyra39928;Parent=Phyra39928;rank=4 scaffold_110 . exon 104780 104834 . - . ID=Phyra39928.4;Parent=Phyra39928;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_110 . CDS 104900 104996 . - 0 ID=Phyra39928;Parent=Phyra39928;rank=3 scaffold_110 . exon 104900 104996 . - . ID=Phyra39928.3;Parent=Phyra39928;constitutive=1;ensembl_phase=2;rank=3 scaffold_110 . CDS 105057 105121 . - 0 ID=Phyra39928;Parent=Phyra39928;rank=2 scaffold_110 . exon 105057 105121 . - . ID=Phyra39928.2;Parent=Phyra39928;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_110 . CDS 105189 105344 . - 0 ID=Phyra39928;Parent=Phyra39928;rank=1 scaffold_110 . exon 105189 105344 . - . ID=Phyra39928.1;Parent=Phyra39928;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 97145 98422 . - . ID=Phyra72221;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_110000005;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 97145 98422 . - . ID=Phyra72221;Parent=Phyra72221;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 97145 97227 . - 0 ID=Phyra72221;Parent=Phyra72221;rank=3 scaffold_110 . exon 97145 97227 . - . ID=Phyra72221.3;Parent=Phyra72221;constitutive=1;ensembl_phase=1;rank=3 scaffold_110 . CDS 97356 97581 . - 0 ID=Phyra72221;Parent=Phyra72221;rank=2 scaffold_110 . exon 97356 97581 . - . ID=Phyra72221.2;Parent=Phyra72221;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_110 . CDS 97643 98422 . - 0 ID=Phyra72221;Parent=Phyra72221;rank=1 scaffold_110 . exon 97643 98422 . - . ID=Phyra72221.1;Parent=Phyra72221;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 100934 102301 . + . ID=Phyra84345;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000025;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 100934 102301 . + . ID=Phyra84345;Parent=Phyra84345;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 100934 101192 . + 0 ID=Phyra84345;Parent=Phyra84345;rank=1 scaffold_110 . exon 100934 101192 . + . ID=Phyra84345.1;Parent=Phyra84345;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_110 . CDS 101269 101343 . + 0 ID=Phyra84345;Parent=Phyra84345;rank=2 scaffold_110 . exon 101269 101343 . + . ID=Phyra84345.2;Parent=Phyra84345;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_110 . CDS 101407 101435 . + 0 ID=Phyra84345;Parent=Phyra84345;rank=3 scaffold_110 . exon 101407 101435 . + . ID=Phyra84345.3;Parent=Phyra84345;constitutive=1;ensembl_phase=1;rank=3 scaffold_110 . CDS 101503 102096 . + 0 ID=Phyra84345;Parent=Phyra84345;rank=4 scaffold_110 . exon 101503 102096 . + . ID=Phyra84345.4;Parent=Phyra84345;constitutive=1;rank=4 scaffold_110 . CDS 102275 102301 . + 0 ID=Phyra84345;Parent=Phyra84345;rank=5 scaffold_110 . exon 102275 102301 . + . ID=Phyra84345.5;Parent=Phyra84345;constitutive=1;rank=5 scaffold_110 . exon 96749 96874 . + . ID=Phyra96836.11;Parent=Phyra96836;constitutive=1;rank=11 scaffold_110 . exon 96945 97070 . + . ID=Phyra96836.12;Parent=Phyra96836;constitutive=1;rank=12 scaffold_110 . biological_region 107140 107144 0.999 + . logic_name=eponine scaffold_110 . biological_region 107393 107394 0.999 + . logic_name=eponine scaffold_110 . repeat_region 107970 108020 . + . description=(CGA)n scaffold_110 . biological_region 110225 110226 0.999 + . logic_name=eponine scaffold_110 . biological_region 111739 111742 0.999 + . logic_name=eponine scaffold_110 . biological_region 111801 111803 0.999 - . logic_name=eponine scaffold_110 . biological_region 111855 111859 0.999 + . logic_name=eponine scaffold_110 . biological_region 113179 113184 0.999 + . logic_name=eponine scaffold_110 . biological_region 113526 113531 0.999 + . logic_name=eponine scaffold_110 . biological_region 114371 114374 0.999 + . logic_name=eponine scaffold_110 . biological_region 114786 114789 0.999 + . logic_name=eponine scaffold_110 . biological_region 114796 114800 0.999 - . logic_name=eponine scaffold_110 . biological_region 114822 114823 0.999 - . logic_name=eponine scaffold_110 . biological_region 114854 114856 0.999 + . logic_name=eponine scaffold_110 . biological_region 115968 115972 0.999 + . logic_name=eponine scaffold_110 ensembl protein_coding_gene 106890 109601 . + . ID=Phyra72223;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_110000007;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 106890 109601 . + . ID=Phyra72223;Parent=Phyra72223;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 106890 109601 . + 0 ID=Phyra72223;Parent=Phyra72223;rank=1 scaffold_110 . exon 106890 109601 . + . ID=Phyra72223.1;Parent=Phyra72223;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 110035 111595 . - . ID=Phyra84348;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000028;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 110035 111595 . - . ID=Phyra84348;Parent=Phyra84348;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 110035 110393 . - 0 ID=Phyra84348;Parent=Phyra84348;rank=3 scaffold_110 . exon 110035 110393 . - . ID=Phyra84348.3;Parent=Phyra84348;constitutive=1;ensembl_phase=1;rank=3 scaffold_110 . CDS 110490 110591 . - 0 ID=Phyra84348;Parent=Phyra84348;rank=2 scaffold_110 . exon 110490 110591 . - . ID=Phyra84348.2;Parent=Phyra84348;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_110 . CDS 110674 111595 . - 0 ID=Phyra84348;Parent=Phyra84348;rank=1 scaffold_110 . exon 110674 111595 . - . ID=Phyra84348.1;Parent=Phyra84348;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_110 ensembl protein_coding_gene 112026 115070 . - . ID=Phyra84349;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000029;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 112026 115070 . - . ID=Phyra84349;Parent=Phyra84349;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 112026 115070 . - 0 ID=Phyra84349;Parent=Phyra84349;rank=1 scaffold_110 . exon 112026 115070 . - . ID=Phyra84349.1;Parent=Phyra84349;constitutive=1;rank=1 scaffold_110 . repeat_region 121217 121328 . ? . description=dust scaffold_110 ensembl tRNA_gene 125358 125430 . + . ID=EPrPRAG00000000072;biotype=tRNA;description=tRNA-Arg for anticodon CCU [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_110 ensembl transcript 125358 125430 . + . ID=EPrPRAT00000000072;Parent=EPrPRAG00000000072;biotype=tRNA;logic_name=ncrna_eg scaffold_110 . exon 125358 125430 . + . ID=EPrPRAE00000000072;Parent=EPrPRAT00000000072;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_110 ensembl protein_coding_gene 116224 117045 . + . ID=Phyra84350;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000030;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 116224 117045 . + . ID=Phyra84350;Parent=Phyra84350;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 116224 117045 . + 0 ID=Phyra84350;Parent=Phyra84350;rank=1 scaffold_110 . exon 116224 117045 . + . ID=Phyra84350.1;Parent=Phyra84350;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 117121 118344 . - . ID=Phyra84351;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000031;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 117121 118344 . - . ID=Phyra84351;Parent=Phyra84351;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 117121 118344 . - 0 ID=Phyra84351;Parent=Phyra84351;rank=1 scaffold_110 . exon 117121 118344 . - . ID=Phyra84351.1;Parent=Phyra84351;constitutive=1;rank=1 scaffold_110 . repeat_region 126496 126530 . ? . description=trf scaffold_110 . repeat_region 126498 126672 . + . description=(CTCA)n scaffold_110 . repeat_region 126549 126637 . ? . description=trf scaffold_110 ensembl protein_coding_gene 130734 132028 . - . ID=Phyra84352;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000032;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 130734 132028 . - . ID=Phyra84352;Parent=Phyra84352;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 130734 130738 . - 0 ID=Phyra84352;Parent=Phyra84352;rank=2 scaffold_110 . exon 130734 130738 . - . ID=Phyra84352.2;Parent=Phyra84352;constitutive=1;ensembl_phase=1;rank=2 scaffold_110 . CDS 130783 132028 . - 0 ID=Phyra84352;Parent=Phyra84352;rank=1 scaffold_110 . exon 130783 132028 . - . ID=Phyra84352.1;Parent=Phyra84352;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_110 ensembl protein_coding_gene 133578 134851 . - . ID=Phyra84353;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000033;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 133578 134851 . - . ID=Phyra84353;Parent=Phyra84353;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 133578 133630 . - 0 ID=Phyra84353;Parent=Phyra84353;rank=2 scaffold_110 . exon 133578 133630 . - . ID=Phyra84353.2;Parent=Phyra84353;constitutive=1;ensembl_phase=1;rank=2 scaffold_110 . CDS 133711 134851 . - 0 ID=Phyra84353;Parent=Phyra84353;rank=1 scaffold_110 . exon 133711 134851 . - . ID=Phyra84353.1;Parent=Phyra84353;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_110 ensembl protein_coding_gene 135130 138342 . - . ID=Phyra84354;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000034;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 135130 138342 . - . ID=Phyra84354;Parent=Phyra84354;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 135130 138342 . - 0 ID=Phyra84354;Parent=Phyra84354;rank=1 scaffold_110 . exon 135130 138342 . - . ID=Phyra84354.1;Parent=Phyra84354;constitutive=1;rank=1 scaffold_110 . repeat_region 143261 143414 . ? . description=dust scaffold_110 . biological_region 144197 144200 0.999 + . logic_name=eponine scaffold_110 . biological_region 144214 144218 0.999 + . logic_name=eponine scaffold_110 . biological_region 144234 144237 0.999 + . logic_name=eponine scaffold_110 . biological_region 144273 144278 0.999 - . logic_name=eponine scaffold_110 . biological_region 144330 144331 0.999 - . logic_name=eponine scaffold_110 . biological_region 144512 144513 0.999 - . logic_name=eponine scaffold_110 ensembl protein_coding_gene 143484 143921 . - . ID=Phyra84355;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000035;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 143484 143921 . - . ID=Phyra84355;Parent=Phyra84355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 143484 143921 . - 0 ID=Phyra84355;Parent=Phyra84355;rank=1 scaffold_110 . exon 143484 143921 . - . ID=Phyra84355.1;Parent=Phyra84355;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 144142 144915 . - . ID=Phyra84356;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_110000036;logic_name=jgi_phyra1 scaffold_110 ensembl transcript 144142 144915 . - . ID=Phyra84356;Parent=Phyra84356;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_110 . CDS 144142 144915 . - 0 ID=Phyra84356;Parent=Phyra84356;rank=1 scaffold_110 . exon 144142 144915 . - . ID=Phyra84356.1;Parent=Phyra84356;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_111 1 145010 scaffold_111 . repeat_region 907 959 . ? . description=trf scaffold_111 . repeat_region 1085 6595 . ? . description=dust scaffold_111 . repeat_region 9075 9649 . ? . description=dust scaffold_111 ensembl protein_coding_gene 363 864 . + . ID=Phyra84357;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000001;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 363 864 . + . ID=Phyra84357;Parent=Phyra84357;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 363 668 . + 0 ID=Phyra84357;Parent=Phyra84357;rank=1 scaffold_111 . exon 363 668 . + . ID=Phyra84357.1;Parent=Phyra84357;constitutive=1;rank=1 scaffold_111 . CDS 826 864 . + 0 ID=Phyra84357;Parent=Phyra84357;rank=2 scaffold_111 . exon 826 864 . + . ID=Phyra84357.2;Parent=Phyra84357;constitutive=1;rank=2 scaffold_111 . biological_region 10509 10510 0.999 - . logic_name=eponine scaffold_111 ensembl protein_coding_gene 14239 20895 . - . ID=Phyra39948;biotype=protein_coding;external_name=gwEuk.111.5.1;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 14239 20895 . - . ID=Phyra39948;Parent=Phyra39948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 14239 14636 . - 0 ID=Phyra39948;Parent=Phyra39948;rank=6 scaffold_111 . exon 14239 14636 . - . ID=Phyra39948.6;Parent=Phyra39948;constitutive=1;ensembl_phase=1;rank=6 scaffold_111 . CDS 14673 15444 . - 0 ID=Phyra39948;Parent=Phyra39948;rank=5 scaffold_111 . exon 14673 15444 . - . ID=Phyra39948.5;Parent=Phyra39948;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_111 . CDS 16911 17614 . - 0 ID=Phyra39948;Parent=Phyra39948;rank=4 scaffold_111 . exon 16911 17614 . - . ID=Phyra39948.4;Parent=Phyra39948;constitutive=1;ensembl_phase=1;rank=4 scaffold_111 . CDS 17672 18222 . - 0 ID=Phyra39948;Parent=Phyra39948;rank=3 scaffold_111 . exon 17672 18222 . - . ID=Phyra39948.3;Parent=Phyra39948;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_111 . CDS 18235 18401 . - 0 ID=Phyra39948;Parent=Phyra39948;rank=2 scaffold_111 . exon 18235 18401 . - . ID=Phyra39948.2;Parent=Phyra39948;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_111 . CDS 20581 20895 . - 0 ID=Phyra39948;Parent=Phyra39948;rank=1 scaffold_111 ensembl protein_coding_gene 11149 12695 . - . ID=Phyra84358;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000002;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 11149 12695 . - . ID=Phyra84358;Parent=Phyra84358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 11149 11178 . - 0 ID=Phyra84358;Parent=Phyra84358;rank=2 scaffold_111 . exon 11149 11178 . - . ID=Phyra84358.2;Parent=Phyra84358;constitutive=1;rank=2 scaffold_111 . CDS 11679 12695 . - 0 ID=Phyra84358;Parent=Phyra84358;rank=1 scaffold_111 . exon 11679 12695 . - . ID=Phyra84358.1;Parent=Phyra84358;constitutive=1;rank=1 scaffold_111 . repeat_region 19487 19509 . ? . description=dust scaffold_111 . repeat_region 19615 19645 . ? . description=dust scaffold_111 . repeat_region 20477 20526 . ? . description=dust scaffold_111 . repeat_region 21113 21270 . ? . description=trf scaffold_111 . repeat_region 21113 21293 . ? . description=trf scaffold_111 . repeat_region 22353 22375 . ? . description=dust scaffold_111 . repeat_region 22481 22511 . ? . description=dust scaffold_111 . repeat_region 24746 24780 . ? . description=trf scaffold_111 . repeat_region 26662 26692 . ? . description=trf scaffold_111 . exon 20581 20895 . - . ID=Phyra39948.1;Parent=Phyra39948;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 24824 28894 . - . ID=Phyra84360;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000004;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 24824 28894 . - . ID=Phyra84360;Parent=Phyra84360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 24824 28894 . - 0 ID=Phyra84360;Parent=Phyra84360;rank=1 scaffold_111 . exon 24824 28894 . - . ID=Phyra84360.1;Parent=Phyra84360;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 32706 33658 . + . ID=Phyra84361;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000005;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 32706 33658 . + . ID=Phyra84361;Parent=Phyra84361;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 32706 33585 . + 0 ID=Phyra84361;Parent=Phyra84361;rank=1 scaffold_111 . exon 32706 33585 . + . ID=Phyra84361.1;Parent=Phyra84361;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_111 . CDS 33636 33658 . + 0 ID=Phyra84361;Parent=Phyra84361;rank=2 scaffold_111 . exon 33636 33658 . + . ID=Phyra84361.2;Parent=Phyra84361;constitutive=1;ensembl_phase=1;rank=2 scaffold_111 . repeat_region 39157 54058 . ? . description=dust scaffold_111 . repeat_region 54161 54209 . ? . description=trf scaffold_111 . repeat_region 56845 56913 . ? . description=trf scaffold_111 . repeat_region 57582 57691 . ? . description=trf scaffold_111 . repeat_region 57665 57694 . ? . description=trf scaffold_111 ensembl protein_coding_gene 57559 59176 . + . ID=Phyra84362;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000006;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 57559 59176 . + . ID=Phyra84362;Parent=Phyra84362;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 57559 57723 . + 0 ID=Phyra84362;Parent=Phyra84362;rank=1 scaffold_111 . exon 57559 57723 . + . ID=Phyra84362.1;Parent=Phyra84362;constitutive=1;rank=1 scaffold_111 . CDS 57815 58474 . + 0 ID=Phyra84362;Parent=Phyra84362;rank=2 scaffold_111 . exon 57815 58474 . + . ID=Phyra84362.2;Parent=Phyra84362;constitutive=1;rank=2 scaffold_111 . CDS 58814 59176 . + 0 ID=Phyra84362;Parent=Phyra84362;rank=3 scaffold_111 . repeat_region 62118 62125 . ? . description=dust scaffold_111 . biological_region 64921 64921 0.999 - . logic_name=eponine scaffold_111 . biological_region 65019 65026 0.999 - . logic_name=eponine scaffold_111 . repeat_region 66256 67318 . ? . description=dust scaffold_111 . exon 58814 59176 . + . ID=Phyra84362.3;Parent=Phyra84362;constitutive=1;rank=3 scaffold_111 ensembl protein_coding_gene 60074 62087 . - . ID=Phyra84363;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000007;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 60074 62087 . - . ID=Phyra84363;Parent=Phyra84363;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 60074 60745 . - 0 ID=Phyra84363;Parent=Phyra84363;rank=3 scaffold_111 . exon 60074 60745 . - . ID=Phyra84363.3;Parent=Phyra84363;constitutive=1;rank=3 scaffold_111 . CDS 60892 61328 . - 0 ID=Phyra84363;Parent=Phyra84363;rank=2 scaffold_111 . exon 60892 61328 . - . ID=Phyra84363.2;Parent=Phyra84363;constitutive=1;ensembl_phase=1;rank=2 scaffold_111 . CDS 61349 62087 . - 0 ID=Phyra84363;Parent=Phyra84363;rank=1 scaffold_111 . exon 61349 62087 . - . ID=Phyra84363.1;Parent=Phyra84363;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_111 ensembl protein_coding_gene 62700 65539 . - . ID=Phyra84364;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000008;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 62700 65539 . - . ID=Phyra84364;Parent=Phyra84364;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 62700 63692 . - 0 ID=Phyra84364;Parent=Phyra84364;rank=4 scaffold_111 . exon 62700 63692 . - . ID=Phyra84364.4;Parent=Phyra84364;constitutive=1;rank=4 scaffold_111 . CDS 64184 65116 . - 0 ID=Phyra84364;Parent=Phyra84364;rank=3 scaffold_111 . exon 64184 65116 . - . ID=Phyra84364.3;Parent=Phyra84364;constitutive=1;rank=3 scaffold_111 . CDS 65158 65435 . - 0 ID=Phyra84364;Parent=Phyra84364;rank=2 scaffold_111 . exon 65158 65435 . - . ID=Phyra84364.2;Parent=Phyra84364;constitutive=1;ensembl_phase=1;rank=2 scaffold_111 . CDS 65530 65539 . - 0 ID=Phyra84364;Parent=Phyra84364;rank=1 scaffold_111 . exon 65530 65539 . - . ID=Phyra84364.1;Parent=Phyra84364;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_111 ensembl protein_coding_gene 70952 71875 . + . ID=Phyra84365;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000009;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 70952 71875 . + . ID=Phyra84365;Parent=Phyra84365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 70952 71875 . + 0 ID=Phyra84365;Parent=Phyra84365;rank=1 scaffold_111 . exon 70952 71875 . + . ID=Phyra84365.1;Parent=Phyra84365;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 75064 75707 . - . ID=Phyra84366;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000010;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 75064 75707 . - . ID=Phyra84366;Parent=Phyra84366;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 75064 75073 . - 0 ID=Phyra84366;Parent=Phyra84366;rank=3 scaffold_111 . exon 75064 75073 . - . ID=Phyra84366.3;Parent=Phyra84366;constitutive=1;ensembl_phase=2;rank=3 scaffold_111 . CDS 75226 75448 . - 0 ID=Phyra84366;Parent=Phyra84366;rank=2 scaffold_111 . exon 75226 75448 . - . ID=Phyra84366.2;Parent=Phyra84366;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_111 . CDS 75497 75707 . - 0 ID=Phyra84366;Parent=Phyra84366;rank=1 scaffold_111 . exon 75497 75707 . - . ID=Phyra84366.1;Parent=Phyra84366;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_111 ensembl protein_coding_gene 75921 76622 . + . ID=Phyra84367;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000011;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 75921 76622 . + . ID=Phyra84367;Parent=Phyra84367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 75921 76622 . + 0 ID=Phyra84367;Parent=Phyra84367;rank=1 scaffold_111 . exon 75921 76622 . + . ID=Phyra84367.1;Parent=Phyra84367;constitutive=1;rank=1 scaffold_111 . repeat_region 76962 79025 . ? . description=dust scaffold_111 . biological_region 79114 79115 0.999 + . logic_name=eponine scaffold_111 . biological_region 80186 80188 0.999 - . logic_name=eponine scaffold_111 . repeat_region 82651 82820 . ? . description=trf scaffold_111 . repeat_region 82651 82822 . ? . description=trf scaffold_111 . repeat_region 82765 82890 . ? . description=trf scaffold_111 . repeat_region 82798 82846 . ? . description=trf scaffold_111 . repeat_region 83566 83614 . ? . description=trf scaffold_111 . repeat_region 83702 83714 . ? . description=dust scaffold_111 . repeat_region 83964 83974 . ? . description=dust scaffold_111 . biological_region 86401 86405 0.999 + . logic_name=eponine scaffold_111 . repeat_region 86623 86875 . + . description=GypsyPi-1c_I-int scaffold_111 ensembl protein_coding_gene 79732 80343 . + . ID=Phyra84368;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000012;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 79732 80343 . + . ID=Phyra84368;Parent=Phyra84368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 79732 80343 . + 0 ID=Phyra84368;Parent=Phyra84368;rank=1 scaffold_111 . exon 79732 80343 . + . ID=Phyra84368.1;Parent=Phyra84368;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 84285 84728 . + . ID=Phyra84369;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000013;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 84285 84728 . + . ID=Phyra84369;Parent=Phyra84369;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 84285 84728 . + 0 ID=Phyra84369;Parent=Phyra84369;rank=1 scaffold_111 . exon 84285 84728 . + . ID=Phyra84369.1;Parent=Phyra84369;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 86121 88630 . + . ID=Phyra84370;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000014;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 86121 88630 . + . ID=Phyra84370;Parent=Phyra84370;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 86121 87002 . + 0 ID=Phyra84370;Parent=Phyra84370;rank=1 scaffold_111 . exon 86121 87002 . + . ID=Phyra84370.1;Parent=Phyra84370;constitutive=1;rank=1 scaffold_111 . CDS 87055 87267 . + 0 ID=Phyra84370;Parent=Phyra84370;rank=2 scaffold_111 . CDS 87472 87607 . + 0 ID=Phyra84370;Parent=Phyra84370;rank=3 scaffold_111 . CDS 87876 88630 . + 0 ID=Phyra84370;Parent=Phyra84370;rank=4 scaffold_111 . exon 87055 87267 . + . ID=Phyra84370.2;Parent=Phyra84370;constitutive=1;rank=2 scaffold_111 . exon 87472 87607 . + . ID=Phyra84370.3;Parent=Phyra84370;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_111 . exon 87876 88630 . + . ID=Phyra84370.4;Parent=Phyra84370;constitutive=1;ensembl_phase=1;rank=4 scaffold_111 ensembl protein_coding_gene 91449 93050 . - . ID=Phyra84371;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000015;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 91449 93050 . - . ID=Phyra84371;Parent=Phyra84371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 91449 93050 . - 0 ID=Phyra84371;Parent=Phyra84371;rank=1 scaffold_111 . exon 91449 93050 . - . ID=Phyra84371.1;Parent=Phyra84371;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 94891 99597 . + . ID=Phyra84372;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000016;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 94891 99597 . + . ID=Phyra84372;Parent=Phyra84372;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 94891 95207 . + 0 ID=Phyra84372;Parent=Phyra84372;rank=1 scaffold_111 . exon 94891 95207 . + . ID=Phyra84372.1;Parent=Phyra84372;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_111 . CDS 95345 95393 . + 0 ID=Phyra84372;Parent=Phyra84372;rank=2 scaffold_111 . exon 95345 95393 . + . ID=Phyra84372.2;Parent=Phyra84372;constitutive=1;ensembl_phase=2;rank=2 scaffold_111 . CDS 95425 97783 . + 0 ID=Phyra84372;Parent=Phyra84372;rank=3 scaffold_111 . exon 95425 97783 . + . ID=Phyra84372.3;Parent=Phyra84372;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_111 . CDS 98033 99597 . + 0 ID=Phyra84372;Parent=Phyra84372;rank=4 scaffold_111 . biological_region 97975 97977 0.999 + . logic_name=eponine scaffold_111 . repeat_region 98505 98512 . ? . description=dust scaffold_111 . biological_region 98744 98748 0.999 - . logic_name=eponine scaffold_111 . biological_region 98990 98992 0.999 + . logic_name=eponine scaffold_111 . repeat_region 100832 100868 . ? . description=trf scaffold_111 . biological_region 101811 101812 0.999 - . logic_name=eponine scaffold_111 . repeat_region 102943 102991 . ? . description=trf scaffold_111 . repeat_region 103079 103089 . ? . description=dust scaffold_111 . repeat_region 103338 103346 . ? . description=dust scaffold_111 . biological_region 103661 103665 0.999 - . logic_name=eponine scaffold_111 . biological_region 103784 103785 0.999 + . logic_name=eponine scaffold_111 . exon 98033 99597 . + . ID=Phyra84372.4;Parent=Phyra84372;constitutive=1;ensembl_phase=1;rank=4 scaffold_111 ensembl protein_coding_gene 100393 103022 . - . ID=Phyra84373;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000017;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 100393 103022 . - . ID=Phyra84373;Parent=Phyra84373;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 100393 100481 . - 0 ID=Phyra84373;Parent=Phyra84373;rank=6 scaffold_111 . exon 100393 100481 . - . ID=Phyra84373.6;Parent=Phyra84373;constitutive=1;ensembl_phase=1;rank=6 scaffold_111 . CDS 100565 101419 . - 0 ID=Phyra84373;Parent=Phyra84373;rank=5 scaffold_111 . exon 100565 101419 . - . ID=Phyra84373.5;Parent=Phyra84373;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_111 . CDS 101715 102254 . - 0 ID=Phyra84373;Parent=Phyra84373;rank=4 scaffold_111 . exon 101715 102254 . - . ID=Phyra84373.4;Parent=Phyra84373;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_111 . CDS 102320 102568 . - 0 ID=Phyra84373;Parent=Phyra84373;rank=3 scaffold_111 . exon 102320 102568 . - . ID=Phyra84373.3;Parent=Phyra84373;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_111 . CDS 102806 102828 . - 0 ID=Phyra84373;Parent=Phyra84373;rank=2 scaffold_111 . exon 102806 102828 . - . ID=Phyra84373.2;Parent=Phyra84373;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_111 . CDS 102997 103022 . - 0 ID=Phyra84373;Parent=Phyra84373;rank=1 scaffold_111 . exon 102997 103022 . - . ID=Phyra84373.1;Parent=Phyra84373;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_111 ensembl protein_coding_gene 109317 109634 . - . ID=Phyra39962;biotype=protein_coding;external_name=gwEuk.111.19.1;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 109317 109634 . - . ID=Phyra39962;Parent=Phyra39962;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 109317 109634 . - 0 ID=Phyra39962;Parent=Phyra39962;rank=1 scaffold_111 . exon 109317 109634 . - . ID=Phyra39962.1;Parent=Phyra39962;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 111862 112452 . + . ID=Phyra84374;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000018;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 111862 112452 . + . ID=Phyra84374;Parent=Phyra84374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 111862 112452 . + 0 ID=Phyra84374;Parent=Phyra84374;rank=1 scaffold_111 . exon 111862 112452 . + . ID=Phyra84374.1;Parent=Phyra84374;constitutive=1;rank=1 scaffold_111 . repeat_region 116096 121542 . ? . description=dust scaffold_111 . repeat_region 121938 121960 . ? . description=dust scaffold_111 . repeat_region 122066 122096 . ? . description=dust scaffold_111 ensembl protein_coding_gene 124423 126113 . - . ID=Phyra84375;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_111000019;logic_name=jgi_phyra1 scaffold_111 ensembl transcript 124423 126113 . - . ID=Phyra84375;Parent=Phyra84375;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_111 . CDS 124423 126029 . - 0 ID=Phyra84375;Parent=Phyra84375;rank=2 scaffold_111 . exon 124423 126029 . - . ID=Phyra84375.2;Parent=Phyra84375;constitutive=1;ensembl_phase=1;rank=2 scaffold_111 . CDS 126071 126113 . - 0 ID=Phyra84375;Parent=Phyra84375;rank=1 scaffold_111 . biological_region 126135 126139 0.999 + . logic_name=eponine scaffold_111 . repeat_region 126249 126279 . ? . description=trf scaffold_111 . repeat_region 133073 133358 . ? . description=trf scaffold_111 . exon 126071 126113 . - . ID=Phyra84375.1;Parent=Phyra84375;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_111 . repeat_region 133359 143117 . ? . description=dust scaffold_111 . repeat_region 144077 144084 . ? . description=dust scaffold_111 . repeat_region 144650 144657 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_106 1 147471 scaffold_106 . repeat_region 1145 2186 . ? . description=dust scaffold_106 . repeat_region 2317 2345 . ? . description=dust scaffold_106 . repeat_region 2342 2379 . ? . description=trf scaffold_106 . repeat_region 2390 2425 . ? . description=trf scaffold_106 . repeat_region 2392 2447 . ? . description=dust scaffold_106 . repeat_region 2649 2692 . ? . description=dust scaffold_106 . repeat_region 2654 2693 . ? . description=trf scaffold_106 . repeat_region 2657 2691 . ? . description=trf scaffold_106 . repeat_region 5145 5824 . ? . description=dust scaffold_106 . biological_region 6001 6004 0.999 + . logic_name=eponine scaffold_106 . repeat_region 6110 6123 . ? . description=dust scaffold_106 . biological_region 7362 7364 0.999 + . logic_name=eponine scaffold_106 ensembl protein_coding_gene 2311 2616 . - . ID=Phyra84187;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000001;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 2311 2616 . - . ID=Phyra84187;Parent=Phyra84187;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 2311 2616 . - 0 ID=Phyra84187;Parent=Phyra84187;rank=1 scaffold_106 . exon 2311 2616 . - . ID=Phyra84187.1;Parent=Phyra84187;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 7072 9165 . - . ID=Phyra84188;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000002;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 7072 9165 . - . ID=Phyra84188;Parent=Phyra84188;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 7072 9165 . - 0 ID=Phyra84188;Parent=Phyra84188;rank=1 scaffold_106 . exon 7072 9165 . - . ID=Phyra84188.1;Parent=Phyra84188;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 10380 12172 . + . ID=Phyra84189;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000003;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 10380 12172 . + . ID=Phyra84189;Parent=Phyra84189;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 10380 11196 . + 0 ID=Phyra84189;Parent=Phyra84189;rank=1 scaffold_106 . exon 10380 11196 . + . ID=Phyra84189.1;Parent=Phyra84189;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_106 . CDS 11280 11633 . + 0 ID=Phyra84189;Parent=Phyra84189;rank=2 scaffold_106 . exon 11280 11633 . + . ID=Phyra84189.2;Parent=Phyra84189;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_106 . CDS 11718 12172 . + 0 ID=Phyra84189;Parent=Phyra84189;rank=3 scaffold_106 . exon 11718 12172 . + . ID=Phyra84189.3;Parent=Phyra84189;constitutive=1;ensembl_phase=1;rank=3 scaffold_106 ensembl protein_coding_gene 12817 13437 . - . ID=Phyra84190;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000004;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 12817 13437 . - . ID=Phyra84190;Parent=Phyra84190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 12817 13437 . - 0 ID=Phyra84190;Parent=Phyra84190;rank=1 scaffold_106 . exon 12817 13437 . - . ID=Phyra84190.1;Parent=Phyra84190;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 13838 15091 . - . ID=Phyra84191;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000005;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 13838 15091 . - . ID=Phyra84191;Parent=Phyra84191;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 13838 14372 . - 0 ID=Phyra84191;Parent=Phyra84191;rank=4 scaffold_106 . exon 13838 14372 . - . ID=Phyra84191.4;Parent=Phyra84191;constitutive=1;ensembl_phase=2;rank=4 scaffold_106 . CDS 14437 14642 . - 0 ID=Phyra84191;Parent=Phyra84191;rank=3 scaffold_106 . exon 14437 14642 . - . ID=Phyra84191.3;Parent=Phyra84191;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_106 . CDS 14712 14906 . - 0 ID=Phyra84191;Parent=Phyra84191;rank=2 scaffold_106 . exon 14712 14906 . - . ID=Phyra84191.2;Parent=Phyra84191;constitutive=1;rank=2 scaffold_106 . CDS 15014 15091 . - 0 ID=Phyra84191;Parent=Phyra84191;rank=1 scaffold_106 . exon 15014 15091 . - . ID=Phyra84191.1;Parent=Phyra84191;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 15366 19669 . + . ID=Phyra96779;biotype=protein_coding;external_name=C_scaffold_106000004;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 15366 19669 . + . ID=Phyra96779;Parent=Phyra96779;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 15366 15465 . + 0 ID=Phyra96779;Parent=Phyra96779;rank=1 scaffold_106 . exon 15366 15465 . + . ID=Phyra96779.1;Parent=Phyra96779;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_106 . CDS 15508 15929 . + 0 ID=Phyra96779;Parent=Phyra96779;rank=2 scaffold_106 . exon 15508 15929 . + . ID=Phyra96779.2;Parent=Phyra96779;constitutive=1;ensembl_phase=1;rank=2 scaffold_106 . CDS 15998 16075 . + 0 ID=Phyra96779;Parent=Phyra96779;rank=3 scaffold_106 . exon 15998 16075 . + . ID=Phyra96779.3;Parent=Phyra96779;constitutive=1;rank=3 scaffold_106 . CDS 16150 16240 . + 0 ID=Phyra96779;Parent=Phyra96779;rank=4 scaffold_106 . exon 16150 16240 . + . ID=Phyra96779.4;Parent=Phyra96779;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_106 . CDS 16358 16535 . + 0 ID=Phyra96779;Parent=Phyra96779;rank=5 scaffold_106 . exon 16358 16535 . + . ID=Phyra96779.5;Parent=Phyra96779;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_106 . CDS 16632 16723 . + 0 ID=Phyra96779;Parent=Phyra96779;rank=6 scaffold_106 . exon 16632 16723 . + . ID=Phyra96779.6;Parent=Phyra96779;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_106 . CDS 16760 16848 . + 0 ID=Phyra96779;Parent=Phyra96779;rank=7 scaffold_106 . exon 16760 16848 . + . ID=Phyra96779.7;Parent=Phyra96779;constitutive=1;ensembl_phase=1;rank=7 scaffold_106 . CDS 16972 17446 . + 0 ID=Phyra96779;Parent=Phyra96779;rank=8 scaffold_106 . exon 16972 17446 . + . ID=Phyra96779.8;Parent=Phyra96779;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_106 . CDS 17495 17833 . + 0 ID=Phyra96779;Parent=Phyra96779;rank=9 scaffold_106 . exon 17495 17833 . + . ID=Phyra96779.9;Parent=Phyra96779;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_106 . CDS 17918 18186 . + 0 ID=Phyra96779;Parent=Phyra96779;rank=10 scaffold_106 . exon 17918 18186 . + . ID=Phyra96779.10;Parent=Phyra96779;constitutive=1;ensembl_phase=1;rank=10 scaffold_106 . CDS 18714 19324 . + 0 ID=Phyra96779;Parent=Phyra96779;rank=11 scaffold_106 . exon 18714 19324 . + . ID=Phyra96779.11;Parent=Phyra96779;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_106 . CDS 19483 19669 . + 0 ID=Phyra96779;Parent=Phyra96779;rank=12 scaffold_106 . exon 19483 19669 . + . ID=Phyra96779.12;Parent=Phyra96779;constitutive=1;ensembl_phase=2;rank=12 scaffold_106 . biological_region 20322 20325 0.999 - . logic_name=eponine scaffold_106 . repeat_region 26833 26866 . ? . description=dust scaffold_106 . repeat_region 26844 26866 . ? . description=trf scaffold_106 . biological_region 28050 28052 0.999 - . logic_name=eponine scaffold_106 . biological_region 28365 28369 0.999 - . logic_name=eponine scaffold_106 . repeat_region 29100 29446 . ? . description=trf scaffold_106 . repeat_region 29106 29410 . ? . description=trf scaffold_106 . biological_region 29227 29229 0.999 + . logic_name=eponine scaffold_106 . biological_region 29234 29235 0.999 + . logic_name=eponine scaffold_106 . biological_region 29255 29257 0.999 - . logic_name=eponine scaffold_106 . biological_region 29332 29333 0.999 + . logic_name=eponine scaffold_106 . biological_region 29360 29362 0.999 - . logic_name=eponine scaffold_106 ensembl protein_coding_gene 20822 21665 . - . ID=Phyra39387;biotype=protein_coding;external_name=gwEuk.106.11.1;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 20822 21665 . - . ID=Phyra39387;Parent=Phyra39387;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 20822 20965 . - 0 ID=Phyra39387;Parent=Phyra39387;rank=6 scaffold_106 . exon 20822 20965 . - . ID=Phyra39387.6;Parent=Phyra39387;constitutive=1;rank=6 scaffold_106 . CDS 21025 21152 . - 0 ID=Phyra39387;Parent=Phyra39387;rank=5 scaffold_106 . exon 21025 21152 . - . ID=Phyra39387.5;Parent=Phyra39387;constitutive=1;ensembl_phase=1;rank=5 scaffold_106 . CDS 21219 21258 . - 0 ID=Phyra39387;Parent=Phyra39387;rank=4 scaffold_106 . exon 21219 21258 . - . ID=Phyra39387.4;Parent=Phyra39387;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_106 . CDS 21323 21374 . - 0 ID=Phyra39387;Parent=Phyra39387;rank=3 scaffold_106 . exon 21323 21374 . - . ID=Phyra39387.3;Parent=Phyra39387;constitutive=1;ensembl_phase=2;rank=3 scaffold_106 . CDS 21439 21542 . - 0 ID=Phyra39387;Parent=Phyra39387;rank=2 scaffold_106 . exon 21439 21542 . - . ID=Phyra39387.2;Parent=Phyra39387;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_106 . CDS 21603 21665 . - 0 ID=Phyra39387;Parent=Phyra39387;rank=1 scaffold_106 . exon 21603 21665 . - . ID=Phyra39387.1;Parent=Phyra39387;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 27785 32064 . + . ID=Phyra39393;biotype=protein_coding;external_name=gwEuk.106.17.1;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 27785 32064 . + . ID=Phyra39393;Parent=Phyra39393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 27785 28552 . + 0 ID=Phyra39393;Parent=Phyra39393;rank=1 scaffold_106 . exon 27785 28552 . + . ID=Phyra39393.1;Parent=Phyra39393;constitutive=1;rank=1 scaffold_106 . CDS 31696 32064 . + 0 ID=Phyra39393;Parent=Phyra39393;rank=2 scaffold_106 ensembl protein_coding_gene 23621 24496 . - . ID=Phyra84195;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000009;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 23621 24496 . - . ID=Phyra84195;Parent=Phyra84195;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 23621 24496 . - 0 ID=Phyra84195;Parent=Phyra84195;rank=1 scaffold_106 . exon 23621 24496 . - . ID=Phyra84195.1;Parent=Phyra84195;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 24720 26087 . - . ID=Phyra84196;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000010;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 24720 26087 . - . ID=Phyra84196;Parent=Phyra84196;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 24720 26087 . - 0 ID=Phyra84196;Parent=Phyra84196;rank=1 scaffold_106 . exon 24720 26087 . - . ID=Phyra84196.1;Parent=Phyra84196;constitutive=1;rank=1 scaffold_106 . exon 31696 32064 . + . ID=Phyra39393.2;Parent=Phyra39393;constitutive=1;rank=2 scaffold_106 ensembl protein_coding_gene 34600 35724 . + . ID=Phyra39394;biotype=protein_coding;external_name=gwEuk.106.18.1;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 34600 35724 . + . ID=Phyra39394;Parent=Phyra39394;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 34600 35724 . + 0 ID=Phyra39394;Parent=Phyra39394;rank=1 scaffold_106 . exon 34600 35724 . + . ID=Phyra39394.1;Parent=Phyra39394;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 36696 40103 . - . ID=Phyra96780;biotype=protein_coding;external_name=C_scaffold_106000005;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 36696 40103 . - . ID=Phyra96780;Parent=Phyra96780;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 36696 36829 . - 0 ID=Phyra96780;Parent=Phyra96780;rank=13 scaffold_106 . exon 36696 36829 . - . ID=Phyra96780.13;Parent=Phyra96780;constitutive=1;ensembl_phase=1;rank=13 scaffold_106 . CDS 36893 36983 . - 0 ID=Phyra96780;Parent=Phyra96780;rank=12 scaffold_106 . exon 36893 36983 . - . ID=Phyra96780.12;Parent=Phyra96780;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_106 . CDS 37049 37165 . - 0 ID=Phyra96780;Parent=Phyra96780;rank=11 scaffold_106 . exon 37049 37165 . - . ID=Phyra96780.11;Parent=Phyra96780;constitutive=1;rank=11 scaffold_106 . CDS 37235 37343 . - 0 ID=Phyra96780;Parent=Phyra96780;rank=10 scaffold_106 . exon 37235 37343 . - . ID=Phyra96780.10;Parent=Phyra96780;constitutive=1;ensembl_phase=2;rank=10 scaffold_106 . CDS 37397 37530 . - 0 ID=Phyra96780;Parent=Phyra96780;rank=9 scaffold_106 . exon 37397 37530 . - . ID=Phyra96780.9;Parent=Phyra96780;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_106 . CDS 37610 38018 . - 0 ID=Phyra96780;Parent=Phyra96780;rank=8 scaffold_106 . exon 37610 38018 . - . ID=Phyra96780.8;Parent=Phyra96780;constitutive=1;ensembl_phase=2;rank=8 scaffold_106 . CDS 38736 38879 . - 0 ID=Phyra96780;Parent=Phyra96780;rank=7 scaffold_106 . exon 38736 38879 . - . ID=Phyra96780.7;Parent=Phyra96780;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_106 . CDS 38916 38985 . - 0 ID=Phyra96780;Parent=Phyra96780;rank=6 scaffold_106 . exon 38916 38985 . - . ID=Phyra96780.6;Parent=Phyra96780;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_106 . CDS 39016 39216 . - 0 ID=Phyra96780;Parent=Phyra96780;rank=5 scaffold_106 . exon 39016 39216 . - . ID=Phyra96780.5;Parent=Phyra96780;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_106 . CDS 39296 39391 . - 0 ID=Phyra96780;Parent=Phyra96780;rank=4 scaffold_106 . exon 39296 39391 . - . ID=Phyra96780.4;Parent=Phyra96780;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_106 . CDS 39425 39460 . - 0 ID=Phyra96780;Parent=Phyra96780;rank=3 scaffold_106 . CDS 39631 39972 . - 0 ID=Phyra96780;Parent=Phyra96780;rank=2 scaffold_106 . CDS 40037 40103 . - 0 ID=Phyra96780;Parent=Phyra96780;rank=1 scaffold_106 . repeat_region 39564 39571 . ? . description=dust scaffold_106 . biological_region 39820 39826 0.999 + . logic_name=eponine scaffold_106 . repeat_region 40978 41025 . ? . description=trf scaffold_106 . biological_region 41559 41559 0.999 - . logic_name=eponine scaffold_106 . biological_region 41587 41588 0.999 + . logic_name=eponine scaffold_106 . biological_region 42069 42071 0.999 - . logic_name=eponine scaffold_106 . biological_region 46316 46317 0.999 + . logic_name=eponine scaffold_106 . biological_region 46439 46444 0.999 + . logic_name=eponine scaffold_106 . biological_region 46567 46572 0.999 - . logic_name=eponine scaffold_106 . biological_region 48037 48038 0.999 - . logic_name=eponine scaffold_106 . biological_region 48086 48088 0.999 - . logic_name=eponine scaffold_106 . repeat_region 48225 50404 . ? . description=dust scaffold_106 ensembl protein_coding_gene 44657 46726 . + . ID=Phyra72200;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_106000002;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 44657 46726 . + . ID=Phyra72200;Parent=Phyra72200;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 44657 45454 . + 0 ID=Phyra72200;Parent=Phyra72200;rank=1 scaffold_106 . exon 44657 45454 . + . ID=Phyra72200.1;Parent=Phyra72200;constitutive=1;rank=1 scaffold_106 . CDS 45494 46576 . + 0 ID=Phyra72200;Parent=Phyra72200;rank=2 scaffold_106 . exon 45494 46576 . + . ID=Phyra72200.2;Parent=Phyra72200;constitutive=1;rank=2 scaffold_106 . CDS 46658 46726 . + 0 ID=Phyra72200;Parent=Phyra72200;rank=3 scaffold_106 . exon 46658 46726 . + . ID=Phyra72200.3;Parent=Phyra72200;constitutive=1;rank=3 scaffold_106 ensembl protein_coding_gene 41498 43149 . - . ID=Phyra84201;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000015;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 41498 43149 . - . ID=Phyra84201;Parent=Phyra84201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 41498 42767 . - 0 ID=Phyra84201;Parent=Phyra84201;rank=2 scaffold_106 . exon 41498 42767 . - . ID=Phyra84201.2;Parent=Phyra84201;constitutive=1;ensembl_phase=2;rank=2 scaffold_106 . CDS 42848 43149 . - 0 ID=Phyra84201;Parent=Phyra84201;rank=1 scaffold_106 . exon 42848 43149 . - . ID=Phyra84201.1;Parent=Phyra84201;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_106 ensembl protein_coding_gene 47309 50521 . + . ID=Phyra84203;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000017;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 47309 50521 . + . ID=Phyra84203;Parent=Phyra84203;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 47309 48196 . + 0 ID=Phyra84203;Parent=Phyra84203;rank=1 scaffold_106 . exon 47309 48196 . + . ID=Phyra84203.1;Parent=Phyra84203;constitutive=1;rank=1 scaffold_106 . CDS 50501 50521 . + 0 ID=Phyra84203;Parent=Phyra84203;rank=2 scaffold_106 . exon 39425 39460 . - . ID=Phyra96780.3;Parent=Phyra96780;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_106 . exon 39631 39972 . - . ID=Phyra96780.2;Parent=Phyra96780;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_106 . exon 40037 40103 . - . ID=Phyra96780.1;Parent=Phyra96780;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_106 . exon 50501 50521 . + . ID=Phyra84203.2;Parent=Phyra84203;constitutive=1;rank=2 scaffold_106 ensembl protein_coding_gene 50868 52532 . + . ID=Phyra84204;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000018;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 50868 52532 . + . ID=Phyra84204;Parent=Phyra84204;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 50868 51441 . + 0 ID=Phyra84204;Parent=Phyra84204;rank=1 scaffold_106 . exon 50868 51441 . + . ID=Phyra84204.1;Parent=Phyra84204;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_106 . CDS 51502 52532 . + 0 ID=Phyra84204;Parent=Phyra84204;rank=2 scaffold_106 . exon 51502 52532 . + . ID=Phyra84204.2;Parent=Phyra84204;constitutive=1;ensembl_phase=1;rank=2 scaffold_106 ensembl protein_coding_gene 55646 56088 . - . ID=Phyra84205;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000019;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 55646 56088 . - . ID=Phyra84205;Parent=Phyra84205;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 55646 55898 . - 0 ID=Phyra84205;Parent=Phyra84205;rank=2 scaffold_106 . exon 55646 55898 . - . ID=Phyra84205.2;Parent=Phyra84205;constitutive=1;ensembl_phase=2;rank=2 scaffold_106 . CDS 55970 56088 . - 0 ID=Phyra84205;Parent=Phyra84205;rank=1 scaffold_106 . exon 55970 56088 . - . ID=Phyra84205.1;Parent=Phyra84205;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_106 ensembl protein_coding_gene 56442 57926 . - . ID=Phyra84206;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000020;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 56442 57926 . - . ID=Phyra84206;Parent=Phyra84206;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 56442 57926 . - 0 ID=Phyra84206;Parent=Phyra84206;rank=1 scaffold_106 . exon 56442 57926 . - . ID=Phyra84206.1;Parent=Phyra84206;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 58798 64969 . + . ID=Phyra84207;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000021;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 58798 64969 . + . ID=Phyra84207;Parent=Phyra84207;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 58798 58916 . + 0 ID=Phyra84207;Parent=Phyra84207;rank=1 scaffold_106 . exon 58798 58916 . + . ID=Phyra84207.1;Parent=Phyra84207;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_106 . CDS 58988 59239 . + 0 ID=Phyra84207;Parent=Phyra84207;rank=2 scaffold_106 . exon 58988 59239 . + . ID=Phyra84207.2;Parent=Phyra84207;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_106 . CDS 59333 60517 . + 0 ID=Phyra84207;Parent=Phyra84207;rank=3 scaffold_106 . CDS 60871 64969 . + 0 ID=Phyra84207;Parent=Phyra84207;rank=4 scaffold_106 . repeat_region 59291 59323 . ? . description=trf scaffold_106 . repeat_region 59291 59323 . ? . description=dust scaffold_106 . repeat_region 60631 60668 . ? . description=trf scaffold_106 . biological_region 62509 62511 0.999 - . logic_name=eponine scaffold_106 . biological_region 65021 65024 0.999 + . logic_name=eponine scaffold_106 . biological_region 65425 65425 0.999 + . logic_name=eponine scaffold_106 . biological_region 65471 65476 0.999 + . logic_name=eponine scaffold_106 . biological_region 65490 65497 0.999 + . logic_name=eponine scaffold_106 . biological_region 65514 65520 0.999 + . logic_name=eponine scaffold_106 . biological_region 65559 65564 0.999 + . logic_name=eponine scaffold_106 . biological_region 65570 65573 0.999 + . logic_name=eponine scaffold_106 . biological_region 65590 65596 0.999 + . logic_name=eponine scaffold_106 . biological_region 65638 65640 0.999 + . logic_name=eponine scaffold_106 . repeat_region 65868 65899 . ? . description=trf scaffold_106 . repeat_region 65973 66151 . ? . description=trf scaffold_106 . repeat_region 66280 66643 . ? . description=trf scaffold_106 . repeat_region 66290 66429 . ? . description=trf scaffold_106 . repeat_region 66321 66538 . ? . description=trf scaffold_106 . repeat_region 66366 66487 . ? . description=trf scaffold_106 . repeat_region 66401 66812 . ? . description=trf scaffold_106 . repeat_region 66411 66812 . ? . description=trf scaffold_106 . repeat_region 66426 66739 . ? . description=trf scaffold_106 . biological_region 67206 67209 0.999 + . logic_name=eponine scaffold_106 . exon 59333 60517 . + . ID=Phyra84207.3;Parent=Phyra84207;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_106 . exon 60871 64969 . + . ID=Phyra84207.4;Parent=Phyra84207;constitutive=1;ensembl_phase=2;rank=4 scaffold_106 ensembl protein_coding_gene 65385 66782 . + . ID=Phyra84208;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000022;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 65385 66782 . + . ID=Phyra84208;Parent=Phyra84208;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 65385 66782 . + 0 ID=Phyra84208;Parent=Phyra84208;rank=1 scaffold_106 . exon 65385 66782 . + . ID=Phyra84208.1;Parent=Phyra84208;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 67247 69589 . - . ID=Phyra84209;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000023;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 67247 69589 . - . ID=Phyra84209;Parent=Phyra84209;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 67247 68905 . - 0 ID=Phyra84209;Parent=Phyra84209;rank=4 scaffold_106 . exon 67247 68905 . - . ID=Phyra84209.4;Parent=Phyra84209;constitutive=1;rank=4 scaffold_106 . CDS 68975 69211 . - 0 ID=Phyra84209;Parent=Phyra84209;rank=3 scaffold_106 . CDS 69303 69413 . - 0 ID=Phyra84209;Parent=Phyra84209;rank=2 scaffold_106 . CDS 69521 69589 . - 0 ID=Phyra84209;Parent=Phyra84209;rank=1 scaffold_106 ensembl protein_coding_gene 69781 70116 . + . ID=Phyra72201;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_106000003;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 69781 70116 . + . ID=Phyra72201;Parent=Phyra72201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 69781 70116 . + 0 ID=Phyra72201;Parent=Phyra72201;rank=1 scaffold_106 . exon 69781 70116 . + . ID=Phyra72201.1;Parent=Phyra72201;constitutive=1;rank=1 scaffold_106 . exon 68975 69211 . - . ID=Phyra84209.3;Parent=Phyra84209;constitutive=1;rank=3 scaffold_106 . exon 69303 69413 . - . ID=Phyra84209.2;Parent=Phyra84209;constitutive=1;rank=2 scaffold_106 . exon 69521 69589 . - . ID=Phyra84209.1;Parent=Phyra84209;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 70225 72515 . - . ID=Phyra84211;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000025;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 70225 72515 . - . ID=Phyra84211;Parent=Phyra84211;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 70225 70447 . - 0 ID=Phyra84211;Parent=Phyra84211;rank=3 scaffold_106 . exon 70225 70447 . - . ID=Phyra84211.3;Parent=Phyra84211;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_106 . CDS 70521 72084 . - 0 ID=Phyra84211;Parent=Phyra84211;rank=2 scaffold_106 . exon 70521 72084 . - . ID=Phyra84211.2;Parent=Phyra84211;constitutive=1;ensembl_phase=2;rank=2 scaffold_106 . CDS 72154 72515 . - 0 ID=Phyra84211;Parent=Phyra84211;rank=1 scaffold_106 . exon 72154 72515 . - . ID=Phyra84211.1;Parent=Phyra84211;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_106 ensembl protein_coding_gene 72745 73333 . + . ID=Phyra84212;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000026;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 72745 73333 . + . ID=Phyra84212;Parent=Phyra84212;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 72745 72873 . + 0 ID=Phyra84212;Parent=Phyra84212;rank=1 scaffold_106 . exon 72745 72873 . + . ID=Phyra84212.1;Parent=Phyra84212;constitutive=1;rank=1 scaffold_106 . CDS 72947 73333 . + 0 ID=Phyra84212;Parent=Phyra84212;rank=2 scaffold_106 . exon 72947 73333 . + . ID=Phyra84212.2;Parent=Phyra84212;constitutive=1;rank=2 scaffold_106 ensembl protein_coding_gene 73639 75519 . - . ID=Phyra84213;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000027;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 73639 75519 . - . ID=Phyra84213;Parent=Phyra84213;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 73639 75519 . - 0 ID=Phyra84213;Parent=Phyra84213;rank=1 scaffold_106 . exon 73639 75519 . - . ID=Phyra84213.1;Parent=Phyra84213;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 78090 79810 . + . ID=Phyra96783;biotype=protein_coding;external_name=C_scaffold_106000008;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 78090 79810 . + . ID=Phyra96783;Parent=Phyra96783;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 78090 78515 . + 0 ID=Phyra96783;Parent=Phyra96783;rank=1 scaffold_106 . exon 78090 78515 . + . ID=Phyra96783.1;Parent=Phyra96783;constitutive=1;rank=1 scaffold_106 . CDS 78589 78690 . + 0 ID=Phyra96783;Parent=Phyra96783;rank=2 scaffold_106 . exon 78589 78690 . + . ID=Phyra96783.2;Parent=Phyra96783;constitutive=1;rank=2 scaffold_106 . CDS 78753 78931 . + 0 ID=Phyra96783;Parent=Phyra96783;rank=3 scaffold_106 . CDS 78988 79093 . + 0 ID=Phyra96783;Parent=Phyra96783;rank=4 scaffold_106 . CDS 79359 79451 . + 0 ID=Phyra96783;Parent=Phyra96783;rank=5 scaffold_106 . CDS 79511 79810 . + 0 ID=Phyra96783;Parent=Phyra96783;rank=6 scaffold_106 . biological_region 78923 78927 0.999 - . logic_name=eponine scaffold_106 . biological_region 79579 79581 0.999 + . logic_name=eponine scaffold_106 . biological_region 79654 79657 0.999 - . logic_name=eponine scaffold_106 . biological_region 80930 80933 0.999 + . logic_name=eponine scaffold_106 . repeat_region 81673 81716 . ? . description=trf scaffold_106 . biological_region 83604 83606 0.999 - . logic_name=eponine scaffold_106 ensembl protein_coding_gene 81318 82439 . - . ID=Phyra84216;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000030;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 81318 82439 . - . ID=Phyra84216;Parent=Phyra84216;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 81318 81956 . - 0 ID=Phyra84216;Parent=Phyra84216;rank=3 scaffold_106 . exon 81318 81956 . - . ID=Phyra84216.3;Parent=Phyra84216;constitutive=1;rank=3 scaffold_106 . CDS 82027 82108 . - 0 ID=Phyra84216;Parent=Phyra84216;rank=2 scaffold_106 . exon 82027 82108 . - . ID=Phyra84216.2;Parent=Phyra84216;constitutive=1;ensembl_phase=2;rank=2 scaffold_106 . CDS 82177 82439 . - 0 ID=Phyra84216;Parent=Phyra84216;rank=1 scaffold_106 . exon 82177 82439 . - . ID=Phyra84216.1;Parent=Phyra84216;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_106 ensembl protein_coding_gene 84293 85747 . + . ID=Phyra84217;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000031;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 84293 85747 . + . ID=Phyra84217;Parent=Phyra84217;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 84293 85747 . + 0 ID=Phyra84217;Parent=Phyra84217;rank=1 scaffold_106 . exon 84293 85747 . + . ID=Phyra84217.1;Parent=Phyra84217;constitutive=1;rank=1 scaffold_106 . exon 78753 78931 . + . ID=Phyra96783.3;Parent=Phyra96783;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_106 . exon 78988 79093 . + . ID=Phyra96783.4;Parent=Phyra96783;constitutive=1;ensembl_phase=2;rank=4 scaffold_106 . exon 79359 79451 . + . ID=Phyra96783.5;Parent=Phyra96783;constitutive=1;rank=5 scaffold_106 . exon 79511 79810 . + . ID=Phyra96783.6;Parent=Phyra96783;constitutive=1;rank=6 scaffold_106 ensembl protein_coding_gene 79895 81040 . - . ID=Phyra96784;biotype=protein_coding;external_name=C_scaffold_106000009;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 79895 81040 . - . ID=Phyra96784;Parent=Phyra96784;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 79895 80043 . - 0 ID=Phyra96784;Parent=Phyra96784;rank=5 scaffold_106 . exon 79895 80043 . - . ID=Phyra96784.5;Parent=Phyra96784;constitutive=1;ensembl_phase=1;rank=5 scaffold_106 . CDS 80103 80222 . - 0 ID=Phyra96784;Parent=Phyra96784;rank=4 scaffold_106 . exon 80103 80222 . - . ID=Phyra96784.4;Parent=Phyra96784;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_106 . CDS 80307 80377 . - 0 ID=Phyra96784;Parent=Phyra96784;rank=3 scaffold_106 . exon 80307 80377 . - . ID=Phyra96784.3;Parent=Phyra96784;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_106 . CDS 80434 80670 . - 0 ID=Phyra96784;Parent=Phyra96784;rank=2 scaffold_106 . exon 80434 80670 . - . ID=Phyra96784.2;Parent=Phyra96784;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_106 . CDS 80742 81040 . - 0 ID=Phyra96784;Parent=Phyra96784;rank=1 scaffold_106 . exon 80742 81040 . - . ID=Phyra96784.1;Parent=Phyra96784;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_106 . repeat_region 90066 90078 . ? . description=dust scaffold_106 . biological_region 103602 103606 0.999 - . logic_name=eponine scaffold_106 . biological_region 103658 103659 0.999 + . logic_name=eponine scaffold_106 . repeat_region 104285 104305 . ? . description=trf scaffold_106 . repeat_region 106548 125150 . ? . description=dust scaffold_106 . biological_region 125534 125535 0.999 - . logic_name=eponine scaffold_106 ensembl protein_coding_gene 125153 125662 . + . ID=Phyra84218;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000032;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 125153 125662 . + . ID=Phyra84218;Parent=Phyra84218;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 125153 125662 . + 0 ID=Phyra84218;Parent=Phyra84218;rank=1 scaffold_106 . exon 125153 125662 . + . ID=Phyra84218.1;Parent=Phyra84218;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 130465 139237 . + . ID=Phyra96787;biotype=protein_coding;external_name=C_scaffold_106000012;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 130465 139237 . + . ID=Phyra96787;Parent=Phyra96787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 130465 131166 . + 0 ID=Phyra96787;Parent=Phyra96787;rank=1 scaffold_106 . exon 130465 131166 . + . ID=Phyra96787.1;Parent=Phyra96787;constitutive=1;rank=1 scaffold_106 . CDS 131212 131403 . + 0 ID=Phyra96787;Parent=Phyra96787;rank=2 scaffold_106 . exon 131212 131403 . + . ID=Phyra96787.2;Parent=Phyra96787;constitutive=1;rank=2 scaffold_106 . CDS 131470 131955 . + 0 ID=Phyra96787;Parent=Phyra96787;rank=3 scaffold_106 . exon 131470 131955 . + . ID=Phyra96787.3;Parent=Phyra96787;constitutive=1;rank=3 scaffold_106 . CDS 132031 133182 . + 0 ID=Phyra96787;Parent=Phyra96787;rank=4 scaffold_106 . exon 132031 133182 . + . ID=Phyra96787.4;Parent=Phyra96787;constitutive=1;rank=4 scaffold_106 . CDS 133297 133731 . + 0 ID=Phyra96787;Parent=Phyra96787;rank=5 scaffold_106 . exon 133297 133731 . + . ID=Phyra96787.5;Parent=Phyra96787;constitutive=1;rank=5 scaffold_106 . CDS 133834 134242 . + 0 ID=Phyra96787;Parent=Phyra96787;rank=6 scaffold_106 . exon 133834 134242 . + . ID=Phyra96787.6;Parent=Phyra96787;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_106 . CDS 134514 134638 . + 0 ID=Phyra96787;Parent=Phyra96787;rank=7 scaffold_106 . exon 134514 134638 . + . ID=Phyra96787.7;Parent=Phyra96787;constitutive=1;ensembl_phase=1;rank=7 scaffold_106 . CDS 134799 135200 . + 0 ID=Phyra96787;Parent=Phyra96787;rank=8 scaffold_106 . exon 134799 135200 . + . ID=Phyra96787.8;Parent=Phyra96787;constitutive=1;rank=8 scaffold_106 . CDS 135246 135477 . + 0 ID=Phyra96787;Parent=Phyra96787;rank=9 scaffold_106 . exon 135246 135477 . + . ID=Phyra96787.9;Parent=Phyra96787;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_106 . CDS 135499 135815 . + 0 ID=Phyra96787;Parent=Phyra96787;rank=10 scaffold_106 . exon 135499 135815 . + . ID=Phyra96787.10;Parent=Phyra96787;constitutive=1;ensembl_phase=1;rank=10 scaffold_106 . CDS 135846 136181 . + 0 ID=Phyra96787;Parent=Phyra96787;rank=11 scaffold_106 . exon 135846 136181 . + . ID=Phyra96787.11;Parent=Phyra96787;constitutive=1;rank=11 scaffold_106 . CDS 136299 136830 . + 0 ID=Phyra96787;Parent=Phyra96787;rank=12 scaffold_106 . exon 136299 136830 . + . ID=Phyra96787.12;Parent=Phyra96787;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_106 . CDS 136999 137208 . + 0 ID=Phyra96787;Parent=Phyra96787;rank=13 scaffold_106 . exon 136999 137208 . + . ID=Phyra96787.13;Parent=Phyra96787;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_106 . CDS 137263 137764 . + 0 ID=Phyra96787;Parent=Phyra96787;rank=14 scaffold_106 . exon 137263 137764 . + . ID=Phyra96787.14;Parent=Phyra96787;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=14 scaffold_106 . CDS 137870 138557 . + 0 ID=Phyra96787;Parent=Phyra96787;rank=15 scaffold_106 . CDS 138711 138999 . + 0 ID=Phyra96787;Parent=Phyra96787;rank=16 scaffold_106 . CDS 139185 139237 . + 0 ID=Phyra96787;Parent=Phyra96787;rank=17 scaffold_106 . biological_region 138545 138545 0.999 + . logic_name=eponine scaffold_106 . repeat_region 140068 140271 . - . description=Polinton-1_PI scaffold_106 . repeat_region 140780 140799 . ? . description=trf scaffold_106 . repeat_region 140780 140799 . ? . description=dust scaffold_106 . repeat_region 140952 141140 . ? . description=trf scaffold_106 . biological_region 141571 141573 0.999 - . logic_name=eponine scaffold_106 . repeat_region 144368 144899 . ? . description=dust scaffold_106 . biological_region 145597 145599 0.999 + . logic_name=eponine scaffold_106 ensembl protein_coding_gene 143440 146721 . - . ID=Phyra39422;biotype=protein_coding;external_name=gwEuk.106.46.1;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 143440 146721 . - . ID=Phyra39422;Parent=Phyra39422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 143440 144365 . - 0 ID=Phyra39422;Parent=Phyra39422;rank=2 scaffold_106 . exon 143440 144365 . - . ID=Phyra39422.2;Parent=Phyra39422;constitutive=1;ensembl_phase=1;rank=2 scaffold_106 . CDS 144915 146721 . - 0 ID=Phyra39422;Parent=Phyra39422;rank=1 scaffold_106 . exon 144915 146721 . - . ID=Phyra39422.1;Parent=Phyra39422;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_106 ensembl protein_coding_gene 140654 142276 . + . ID=Phyra84221;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_106000035;logic_name=jgi_phyra1 scaffold_106 ensembl transcript 140654 142276 . + . ID=Phyra84221;Parent=Phyra84221;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_106 . CDS 140654 142276 . + 0 ID=Phyra84221;Parent=Phyra84221;rank=1 scaffold_106 . exon 140654 142276 . + . ID=Phyra84221.1;Parent=Phyra84221;constitutive=1;rank=1 scaffold_106 . exon 137870 138557 . + . ID=Phyra96787.15;Parent=Phyra96787;constitutive=1;ensembl_phase=2;rank=15 scaffold_106 . exon 138711 138999 . + . ID=Phyra96787.16;Parent=Phyra96787;constitutive=1;ensembl_end_phase=1;rank=16 scaffold_106 . exon 139185 139237 . + . ID=Phyra96787.17;Parent=Phyra96787;constitutive=1;ensembl_phase=1;rank=17 ##gff-version 3 ##sequence-region scaffold_109 1 149230 scaffold_109 . repeat_region 1 294 . ? . description=trf scaffold_109 . repeat_region 42 323 . ? . description=trf scaffold_109 . repeat_region 42 323 . ? . description=trf scaffold_109 . repeat_region 42 323 . ? . description=trf scaffold_109 . repeat_region 396 738 . ? . description=trf scaffold_109 . repeat_region 755 1296 . ? . description=dust scaffold_109 . repeat_region 1297 1655 . ? . description=trf scaffold_109 . repeat_region 1670 1924 . ? . description=trf scaffold_109 . repeat_region 2692 2709 . ? . description=dust scaffold_109 . repeat_region 2709 2758 . ? . description=trf scaffold_109 . repeat_region 2712 2760 . ? . description=trf scaffold_109 . repeat_region 2712 2770 . ? . description=dust scaffold_109 . repeat_region 2718 2760 . ? . description=trf scaffold_109 . repeat_region 4131 5101 . ? . description=trf scaffold_109 . biological_region 4241 4243 0.999 + . logic_name=eponine scaffold_109 . biological_region 4377 4377 0.999 + . logic_name=eponine scaffold_109 . biological_region 4554 4556 0.999 + . logic_name=eponine scaffold_109 . biological_region 4874 4875 0.999 + . logic_name=eponine scaffold_109 . repeat_region 5102 5151 . ? . description=dust scaffold_109 . biological_region 6788 6791 0.999 - . logic_name=eponine scaffold_109 . repeat_region 7754 7771 . ? . description=dust scaffold_109 . biological_region 8431 8432 0.999 - . logic_name=eponine scaffold_109 . biological_region 8451 8455 0.999 + . logic_name=eponine scaffold_109 . biological_region 8479 8483 0.999 - . logic_name=eponine scaffold_109 . repeat_region 9273 9414 . + . description=GypsyPi-1c_I-int scaffold_109 ensembl protein_coding_gene 60 1957 . + . ID=Phyra84295;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000001;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 60 1957 . + . ID=Phyra84295;Parent=Phyra84295;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 60 114 . + 0 ID=Phyra84295;Parent=Phyra84295;rank=1 scaffold_109 . exon 60 114 . + . ID=Phyra84295.1;Parent=Phyra84295;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_109 . CDS 148 744 . + 0 ID=Phyra84295;Parent=Phyra84295;rank=2 scaffold_109 . exon 148 744 . + . ID=Phyra84295.2;Parent=Phyra84295;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_109 . CDS 1353 1957 . + 0 ID=Phyra84295;Parent=Phyra84295;rank=3 scaffold_109 . exon 1353 1957 . + . ID=Phyra84295.3;Parent=Phyra84295;constitutive=1;ensembl_phase=1;rank=3 scaffold_109 ensembl protein_coding_gene 3601 5019 . + . ID=Phyra84296;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000002;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 3601 5019 . + . ID=Phyra84296;Parent=Phyra84296;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 3601 5019 . + 0 ID=Phyra84296;Parent=Phyra84296;rank=1 scaffold_109 . exon 3601 5019 . + . ID=Phyra84296.1;Parent=Phyra84296;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 6165 6944 . - . ID=Phyra84297;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000003;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 6165 6944 . - . ID=Phyra84297;Parent=Phyra84297;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 6165 6172 . - 0 ID=Phyra84297;Parent=Phyra84297;rank=3 scaffold_109 . exon 6165 6172 . - . ID=Phyra84297.3;Parent=Phyra84297;constitutive=1;ensembl_phase=1;rank=3 scaffold_109 . CDS 6292 6399 . - 0 ID=Phyra84297;Parent=Phyra84297;rank=2 scaffold_109 . exon 6292 6399 . - . ID=Phyra84297.2;Parent=Phyra84297;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_109 . CDS 6521 6944 . - 0 ID=Phyra84297;Parent=Phyra84297;rank=1 scaffold_109 . exon 6521 6944 . - . ID=Phyra84297.1;Parent=Phyra84297;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_109 ensembl protein_coding_gene 9023 10045 . + . ID=Phyra84298;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000004;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 9023 10045 . + . ID=Phyra84298;Parent=Phyra84298;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 9023 10045 . + 0 ID=Phyra84298;Parent=Phyra84298;rank=1 scaffold_109 . exon 9023 10045 . + . ID=Phyra84298.1;Parent=Phyra84298;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 10838 13236 . + . ID=Phyra84299;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000005;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 10838 13236 . + . ID=Phyra84299;Parent=Phyra84299;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 10838 11200 . + 0 ID=Phyra84299;Parent=Phyra84299;rank=1 scaffold_109 . exon 10838 11200 . + . ID=Phyra84299.1;Parent=Phyra84299;constitutive=1;rank=1 scaffold_109 . CDS 11392 11460 . + 0 ID=Phyra84299;Parent=Phyra84299;rank=2 scaffold_109 . exon 11392 11460 . + . ID=Phyra84299.2;Parent=Phyra84299;constitutive=1;rank=2 scaffold_109 . CDS 11512 13236 . + 0 ID=Phyra84299;Parent=Phyra84299;rank=3 scaffold_109 . exon 11512 13236 . + . ID=Phyra84299.3;Parent=Phyra84299;constitutive=1;rank=3 scaffold_109 ensembl protein_coding_gene 13978 15739 . - . ID=Phyra84300;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000006;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 13978 15739 . - . ID=Phyra84300;Parent=Phyra84300;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 13978 15070 . - 0 ID=Phyra84300;Parent=Phyra84300;rank=3 scaffold_109 . exon 13978 15070 . - . ID=Phyra84300.3;Parent=Phyra84300;constitutive=1;ensembl_phase=2;rank=3 scaffold_109 . CDS 15291 15665 . - 0 ID=Phyra84300;Parent=Phyra84300;rank=2 scaffold_109 . exon 15291 15665 . - . ID=Phyra84300.2;Parent=Phyra84300;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_109 . CDS 15714 15739 . - 0 ID=Phyra84300;Parent=Phyra84300;rank=1 scaffold_109 . exon 15714 15739 . - . ID=Phyra84300.1;Parent=Phyra84300;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_109 . repeat_region 20999 21012 . ? . description=dust scaffold_109 . repeat_region 22214 22223 . ? . description=dust scaffold_109 . repeat_region 22685 22692 . ? . description=dust scaffold_109 . repeat_region 24416 37260 . ? . description=dust scaffold_109 . repeat_region 42502 42535 . ? . description=dust scaffold_109 . repeat_region 42516 42535 . ? . description=trf scaffold_109 . biological_region 44077 44077 0.999 + . logic_name=eponine scaffold_109 . biological_region 44371 44375 0.999 + . logic_name=eponine scaffold_109 . biological_region 46538 46544 0.999 + . logic_name=eponine scaffold_109 . biological_region 46628 46629 0.999 + . logic_name=eponine scaffold_109 . repeat_region 47967 47984 . ? . description=dust scaffold_109 . repeat_region 48685 48735 . ? . description=trf scaffold_109 ensembl protein_coding_gene 43767 44600 . + . ID=Phyra84301;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000007;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 43767 44600 . + . ID=Phyra84301;Parent=Phyra84301;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 43767 44600 . + 0 ID=Phyra84301;Parent=Phyra84301;rank=1 scaffold_109 . exon 43767 44600 . + . ID=Phyra84301.1;Parent=Phyra84301;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 44867 46645 . - . ID=Phyra84302;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000008;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 44867 46645 . - . ID=Phyra84302;Parent=Phyra84302;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 44867 46645 . - 0 ID=Phyra84302;Parent=Phyra84302;rank=1 scaffold_109 . exon 44867 46645 . - . ID=Phyra84302.1;Parent=Phyra84302;constitutive=1;rank=1 scaffold_109 ensembl pseudogene 51348 62679 . - . ID=Phyra39529;biotype=pseudogene;external_name=gwEuk.109.2.1;logic_name=jgi_phyra1 scaffold_109 ensembl pseudogene 51348 62679 . - . ID=Phyra39529;Parent=Phyra39529;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_109 . exon 51348 51540 . - . ID=Phyra39529.3;Parent=Phyra39529;constitutive=1;ensembl_phase=2;rank=3 scaffold_109 . exon 51851 52470 . - . ID=Phyra39529.2;Parent=Phyra39529;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_109 . repeat_region 60010 60059 . ? . description=dust scaffold_109 . biological_region 60179 60181 0.999 + . logic_name=eponine scaffold_109 . biological_region 60195 60199 0.999 - . logic_name=eponine scaffold_109 . repeat_region 61235 61284 . ? . description=dust scaffold_109 . repeat_region 62720 62730 . ? . description=dust scaffold_109 . repeat_region 63481 63788 . - . description=GypsyPi-1c_LTR scaffold_109 . biological_region 64099 64101 0.999 + . logic_name=eponine scaffold_109 . biological_region 64444 64449 0.999 - . logic_name=eponine scaffold_109 . biological_region 64612 64615 0.999 + . logic_name=eponine scaffold_109 . biological_region 64666 64673 0.999 - . logic_name=eponine scaffold_109 . repeat_region 65066 65165 . ? . description=trf scaffold_109 . repeat_region 65462 65509 . ? . description=trf scaffold_109 . biological_region 66342 66345 0.999 + . logic_name=eponine scaffold_109 . biological_region 67388 67390 0.999 - . logic_name=eponine scaffold_109 . biological_region 67442 67443 0.999 + . logic_name=eponine scaffold_109 . biological_region 67463 67469 0.999 + . logic_name=eponine scaffold_109 . repeat_region 69532 69567 . ? . description=trf scaffold_109 . exon 62560 62679 . - . ID=Phyra39529.1;Parent=Phyra39529;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 64253 65533 . + . ID=Phyra72214;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_109000001;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 64253 65533 . + . ID=Phyra72214;Parent=Phyra72214;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 64253 65533 . + 0 ID=Phyra72214;Parent=Phyra72214;rank=1 scaffold_109 . exon 64253 65533 . + . ID=Phyra72214.1;Parent=Phyra72214;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 67270 68769 . + . ID=Phyra72215;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_109000002;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 67270 68769 . + . ID=Phyra72215;Parent=Phyra72215;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 67270 68769 . + 0 ID=Phyra72215;Parent=Phyra72215;rank=1 scaffold_109 . exon 67270 68769 . + . ID=Phyra72215.1;Parent=Phyra72215;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 69180 69869 . - . ID=Phyra72216;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_109000003;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 69180 69869 . - . ID=Phyra72216;Parent=Phyra72216;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 69180 69776 . - 0 ID=Phyra72216;Parent=Phyra72216;rank=2 scaffold_109 . exon 69180 69776 . - . ID=Phyra72216.2;Parent=Phyra72216;constitutive=1;rank=2 scaffold_109 . CDS 69798 69869 . - 0 ID=Phyra72216;Parent=Phyra72216;rank=1 scaffold_109 ensembl protein_coding_gene 65800 66563 . - . ID=Phyra84305;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000011;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 65800 66563 . - . ID=Phyra84305;Parent=Phyra84305;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 65800 65937 . - 0 ID=Phyra84305;Parent=Phyra84305;rank=3 scaffold_109 . exon 65800 65937 . - . ID=Phyra84305.3;Parent=Phyra84305;constitutive=1;rank=3 scaffold_109 . CDS 66006 66073 . - 0 ID=Phyra84305;Parent=Phyra84305;rank=2 scaffold_109 . exon 66006 66073 . - . ID=Phyra84305.2;Parent=Phyra84305;constitutive=1;ensembl_phase=1;rank=2 scaffold_109 . CDS 66146 66563 . - 0 ID=Phyra84305;Parent=Phyra84305;rank=1 scaffold_109 . exon 66146 66563 . - . ID=Phyra84305.1;Parent=Phyra84305;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_109 . exon 69798 69869 . - . ID=Phyra72216.1;Parent=Phyra72216;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 70080 70760 . - . ID=Phyra84308;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000014;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 70080 70760 . - . ID=Phyra84308;Parent=Phyra84308;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 70080 70760 . - 0 ID=Phyra84308;Parent=Phyra84308;rank=1 scaffold_109 . exon 70080 70760 . - . ID=Phyra84308.1;Parent=Phyra84308;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 71803 80483 . + . ID=Phyra84309;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000015;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 71803 80483 . + . ID=Phyra84309;Parent=Phyra84309;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 71803 71899 . + 0 ID=Phyra84309;Parent=Phyra84309;rank=1 scaffold_109 . exon 71803 71899 . + . ID=Phyra84309.1;Parent=Phyra84309;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_109 . CDS 71993 72018 . + 0 ID=Phyra84309;Parent=Phyra84309;rank=2 scaffold_109 . exon 71993 72018 . + . ID=Phyra84309.2;Parent=Phyra84309;constitutive=1;ensembl_phase=1;rank=2 scaffold_109 . CDS 72084 73228 . + 0 ID=Phyra84309;Parent=Phyra84309;rank=3 scaffold_109 . exon 72084 73228 . + . ID=Phyra84309.3;Parent=Phyra84309;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_109 . CDS 73591 74485 . + 0 ID=Phyra84309;Parent=Phyra84309;rank=4 scaffold_109 . exon 73591 74485 . + . ID=Phyra84309.4;Parent=Phyra84309;constitutive=1;ensembl_phase=2;rank=4 scaffold_109 . CDS 74556 74917 . + 0 ID=Phyra84309;Parent=Phyra84309;rank=5 scaffold_109 . exon 74556 74917 . + . ID=Phyra84309.5;Parent=Phyra84309;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_109 . CDS 75464 78343 . + 0 ID=Phyra84309;Parent=Phyra84309;rank=6 scaffold_109 . exon 75464 78343 . + . ID=Phyra84309.6;Parent=Phyra84309;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_109 . CDS 78380 78528 . + 0 ID=Phyra84309;Parent=Phyra84309;rank=7 scaffold_109 . exon 78380 78528 . + . ID=Phyra84309.7;Parent=Phyra84309;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_109 . CDS 78550 78659 . + 0 ID=Phyra84309;Parent=Phyra84309;rank=8 scaffold_109 . exon 78550 78659 . + . ID=Phyra84309.8;Parent=Phyra84309;constitutive=1;ensembl_phase=1;rank=8 scaffold_109 . CDS 78804 80483 . + 0 ID=Phyra84309;Parent=Phyra84309;rank=9 scaffold_109 . exon 78804 80483 . + . ID=Phyra84309.9;Parent=Phyra84309;constitutive=1;rank=9 scaffold_109 . biological_region 80671 80676 0.999 - . logic_name=eponine scaffold_109 . biological_region 84011 84015 0.999 - . logic_name=eponine scaffold_109 . biological_region 84036 84039 0.999 - . logic_name=eponine scaffold_109 . repeat_region 85134 85141 . ? . description=dust scaffold_109 . biological_region 87530 87534 0.999 - . logic_name=eponine scaffold_109 . biological_region 87552 87553 0.999 - . logic_name=eponine scaffold_109 ensembl protein_coding_gene 82831 84718 . + . ID=Phyra84310;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000016;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 82831 84718 . + . ID=Phyra84310;Parent=Phyra84310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 82831 82980 . + 0 ID=Phyra84310;Parent=Phyra84310;rank=1 scaffold_109 . exon 82831 82980 . + . ID=Phyra84310.1;Parent=Phyra84310;constitutive=1;rank=1 scaffold_109 . CDS 83035 83328 . + 0 ID=Phyra84310;Parent=Phyra84310;rank=2 scaffold_109 . exon 83035 83328 . + . ID=Phyra84310.2;Parent=Phyra84310;constitutive=1;rank=2 scaffold_109 . CDS 83413 83604 . + 0 ID=Phyra84310;Parent=Phyra84310;rank=3 scaffold_109 . exon 83413 83604 . + . ID=Phyra84310.3;Parent=Phyra84310;constitutive=1;rank=3 scaffold_109 . CDS 83666 84718 . + 0 ID=Phyra84310;Parent=Phyra84310;rank=4 scaffold_109 . exon 83666 84718 . + . ID=Phyra84310.4;Parent=Phyra84310;constitutive=1;rank=4 scaffold_109 ensembl protein_coding_gene 85552 88791 . + . ID=Phyra84311;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000017;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 85552 88791 . + . ID=Phyra84311;Parent=Phyra84311;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 85552 85631 . + 0 ID=Phyra84311;Parent=Phyra84311;rank=1 scaffold_109 . exon 85552 85631 . + . ID=Phyra84311.1;Parent=Phyra84311;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_109 . CDS 85880 88703 . + 0 ID=Phyra84311;Parent=Phyra84311;rank=2 scaffold_109 . exon 85880 88703 . + . ID=Phyra84311.2;Parent=Phyra84311;constitutive=1;ensembl_phase=2;rank=2 scaffold_109 . CDS 88735 88791 . + 0 ID=Phyra84311;Parent=Phyra84311;rank=3 scaffold_109 . exon 88735 88791 . + . ID=Phyra84311.3;Parent=Phyra84311;constitutive=1;rank=3 scaffold_109 ensembl protein_coding_gene 88984 89723 . - . ID=Phyra84312;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000018;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 88984 89723 . - . ID=Phyra84312;Parent=Phyra84312;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 88984 89322 . - 0 ID=Phyra84312;Parent=Phyra84312;rank=3 scaffold_109 . exon 88984 89322 . - . ID=Phyra84312.3;Parent=Phyra84312;constitutive=1;rank=3 scaffold_109 . CDS 89394 89493 . - 0 ID=Phyra84312;Parent=Phyra84312;rank=2 scaffold_109 . exon 89394 89493 . - . ID=Phyra84312.2;Parent=Phyra84312;constitutive=1;ensembl_phase=2;rank=2 scaffold_109 . CDS 89572 89723 . - 0 ID=Phyra84312;Parent=Phyra84312;rank=1 scaffold_109 . exon 89572 89723 . - . ID=Phyra84312.1;Parent=Phyra84312;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_109 ensembl protein_coding_gene 90342 93503 . - . ID=Phyra84313;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000019;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 90342 93503 . - . ID=Phyra84313;Parent=Phyra84313;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 90342 93503 . - 0 ID=Phyra84313;Parent=Phyra84313;rank=1 scaffold_109 . exon 90342 93503 . - . ID=Phyra84313.1;Parent=Phyra84313;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 94313 95464 . - . ID=Phyra84314;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000020;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 94313 95464 . - . ID=Phyra84314;Parent=Phyra84314;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 94313 95464 . - 0 ID=Phyra84314;Parent=Phyra84314;rank=1 scaffold_109 . exon 94313 95464 . - . ID=Phyra84314.1;Parent=Phyra84314;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 98636 100541 . + . ID=Phyra84315;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000021;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 98636 100541 . + . ID=Phyra84315;Parent=Phyra84315;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 98636 98740 . + 0 ID=Phyra84315;Parent=Phyra84315;rank=1 scaffold_109 . exon 98636 98740 . + . ID=Phyra84315.1;Parent=Phyra84315;constitutive=1;rank=1 scaffold_109 . CDS 98811 99095 . + 0 ID=Phyra84315;Parent=Phyra84315;rank=2 scaffold_109 . exon 98811 99095 . + . ID=Phyra84315.2;Parent=Phyra84315;constitutive=1;rank=2 scaffold_109 . CDS 99165 99257 . + 0 ID=Phyra84315;Parent=Phyra84315;rank=3 scaffold_109 . exon 99165 99257 . + . ID=Phyra84315.3;Parent=Phyra84315;constitutive=1;rank=3 scaffold_109 . CDS 99320 99418 . + 0 ID=Phyra84315;Parent=Phyra84315;rank=4 scaffold_109 . exon 99320 99418 . + . ID=Phyra84315.4;Parent=Phyra84315;constitutive=1;rank=4 scaffold_109 . CDS 99482 100417 . + 0 ID=Phyra84315;Parent=Phyra84315;rank=5 scaffold_109 . exon 99482 100417 . + . ID=Phyra84315.5;Parent=Phyra84315;constitutive=1;rank=5 scaffold_109 . CDS 100461 100541 . + 0 ID=Phyra84315;Parent=Phyra84315;rank=6 scaffold_109 . repeat_region 100781 100791 . ? . description=dust scaffold_109 . repeat_region 101681 101915 . - . description=Gypsy-2-I_PI-int scaffold_109 . repeat_region 101998 102099 . - . description=Gypsy-1-LTR_PI scaffold_109 . biological_region 105576 105580 0.999 - . logic_name=eponine scaffold_109 . biological_region 105655 105655 0.999 - . logic_name=eponine scaffold_109 . biological_region 106165 106167 0.999 + . logic_name=eponine scaffold_109 . biological_region 107925 107927 0.999 - . logic_name=eponine scaffold_109 . biological_region 108029 108034 0.999 - . logic_name=eponine scaffold_109 . exon 100461 100541 . + . ID=Phyra84315.6;Parent=Phyra84315;constitutive=1;rank=6 scaffold_109 ensembl protein_coding_gene 105330 105965 . + . ID=Phyra84316;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000022;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 105330 105965 . + . ID=Phyra84316;Parent=Phyra84316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 105330 105965 . + 0 ID=Phyra84316;Parent=Phyra84316;rank=1 scaffold_109 . exon 105330 105965 . + . ID=Phyra84316.1;Parent=Phyra84316;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 106876 107388 . + . ID=Phyra84317;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000023;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 106876 107388 . + . ID=Phyra84317;Parent=Phyra84317;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 106876 107388 . + 0 ID=Phyra84317;Parent=Phyra84317;rank=1 scaffold_109 . exon 106876 107388 . + . ID=Phyra84317.1;Parent=Phyra84317;constitutive=1;rank=1 scaffold_109 . repeat_region 112919 112940 . ? . description=trf scaffold_109 . repeat_region 115393 115436 . ? . description=trf scaffold_109 ensembl protein_coding_gene 110987 112144 . - . ID=Phyra84318;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000024;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 110987 112144 . - . ID=Phyra84318;Parent=Phyra84318;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 110987 112144 . - 0 ID=Phyra84318;Parent=Phyra84318;rank=1 scaffold_109 . exon 110987 112144 . - . ID=Phyra84318.1;Parent=Phyra84318;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 112758 114634 . - . ID=Phyra84319;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000025;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 112758 114634 . - . ID=Phyra84319;Parent=Phyra84319;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 112758 112784 . - 0 ID=Phyra84319;Parent=Phyra84319;rank=6 scaffold_109 . exon 112758 112784 . - . ID=Phyra84319.6;Parent=Phyra84319;constitutive=1;rank=6 scaffold_109 . CDS 112894 113721 . - 0 ID=Phyra84319;Parent=Phyra84319;rank=5 scaffold_109 . exon 112894 113721 . - . ID=Phyra84319.5;Parent=Phyra84319;constitutive=1;rank=5 scaffold_109 . CDS 113805 113903 . - 0 ID=Phyra84319;Parent=Phyra84319;rank=4 scaffold_109 . exon 113805 113903 . - . ID=Phyra84319.4;Parent=Phyra84319;constitutive=1;rank=4 scaffold_109 . CDS 113966 114058 . - 0 ID=Phyra84319;Parent=Phyra84319;rank=3 scaffold_109 . exon 113966 114058 . - . ID=Phyra84319.3;Parent=Phyra84319;constitutive=1;rank=3 scaffold_109 . CDS 114131 114359 . - 0 ID=Phyra84319;Parent=Phyra84319;rank=2 scaffold_109 . exon 114131 114359 . - . ID=Phyra84319.2;Parent=Phyra84319;constitutive=1;ensembl_phase=2;rank=2 scaffold_109 . CDS 114501 114634 . - 0 ID=Phyra84319;Parent=Phyra84319;rank=1 scaffold_109 . exon 114501 114634 . - . ID=Phyra84319.1;Parent=Phyra84319;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_109 ensembl protein_coding_gene 119002 120511 . + . ID=Phyra84320;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_109000026;logic_name=jgi_phyra1 scaffold_109 ensembl transcript 119002 120511 . + . ID=Phyra84320;Parent=Phyra84320;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_109 . CDS 119002 119049 . + 0 ID=Phyra84320;Parent=Phyra84320;rank=1 scaffold_109 . exon 119002 119049 . + . ID=Phyra84320.1;Parent=Phyra84320;constitutive=1;rank=1 scaffold_109 . CDS 119256 119402 . + 0 ID=Phyra84320;Parent=Phyra84320;rank=2 scaffold_109 . exon 119256 119402 . + . ID=Phyra84320.2;Parent=Phyra84320;constitutive=1;rank=2 scaffold_109 . CDS 119481 119573 . + 0 ID=Phyra84320;Parent=Phyra84320;rank=3 scaffold_109 . CDS 119656 119754 . + 0 ID=Phyra84320;Parent=Phyra84320;rank=4 scaffold_109 . CDS 119863 120240 . + 0 ID=Phyra84320;Parent=Phyra84320;rank=5 scaffold_109 . CDS 120313 120407 . + 0 ID=Phyra84320;Parent=Phyra84320;rank=6 scaffold_109 . CDS 120505 120511 . + 0 ID=Phyra84320;Parent=Phyra84320;rank=7 scaffold_109 . biological_region 124242 124244 0.999 - . logic_name=eponine scaffold_109 . repeat_region 124436 124776 . ? . description=dust scaffold_109 . repeat_region 124835 124849 . ? . description=dust scaffold_109 . biological_region 124986 124987 0.999 + . logic_name=eponine scaffold_109 . biological_region 125026 125029 0.999 + . logic_name=eponine scaffold_109 . repeat_region 125102 125380 . - . description=GypsyPi-1c_I-int scaffold_109 . repeat_region 125698 125851 . - . description=GypsyPi-1c_I-int scaffold_109 . repeat_region 125852 128691 . ? . description=dust scaffold_109 . biological_region 128954 128958 0.999 - . logic_name=eponine scaffold_109 . biological_region 129058 129059 0.999 - . logic_name=eponine scaffold_109 . biological_region 129109 129111 0.999 - . logic_name=eponine scaffold_109 . exon 119481 119573 . + . ID=Phyra84320.3;Parent=Phyra84320;constitutive=1;rank=3 scaffold_109 . exon 119656 119754 . + . ID=Phyra84320.4;Parent=Phyra84320;constitutive=1;rank=4 scaffold_109 . exon 119863 120240 . + . ID=Phyra84320.5;Parent=Phyra84320;constitutive=1;rank=5 scaffold_109 . exon 120313 120407 . + . ID=Phyra84320.6;Parent=Phyra84320;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_109 . exon 120505 120511 . + . ID=Phyra84320.7;Parent=Phyra84320;constitutive=1;ensembl_phase=2;rank=7 scaffold_109 . repeat_region 131790 147341 . ? . description=dust scaffold_109 . repeat_region 147559 147643 . ? . description=dust scaffold_109 . repeat_region 147587 147639 . ? . description=trf scaffold_109 . repeat_region 148111 148194 . ? . description=dust scaffold_109 . repeat_region 148138 148190 . ? . description=trf scaffold_109 . repeat_region 148677 148740 . ? . description=dust scaffold_109 . biological_region 148813 148814 0.999 - . logic_name=eponine scaffold_109 ensembl tRNA_gene 147485 147557 . - . ID=EPrPRAG00000000045;biotype=tRNA;description=tRNA-Lys for anticodon UUU [Source:TRNASCAN_SE%3BAcc:tRNA-Lys];external_name=tRNA-Lys;logic_name=ncrna_eg scaffold_109 ensembl transcript 147485 147557 . - . ID=EPrPRAT00000000045;Parent=EPrPRAG00000000045;biotype=tRNA;logic_name=ncrna_eg scaffold_109 ensembl tRNA_gene 148587 148659 . - . ID=EPrPRAG00000000092;biotype=tRNA;description=tRNA-Lys for anticodon UUU [Source:TRNASCAN_SE%3BAcc:tRNA-Lys];external_name=tRNA-Lys;logic_name=ncrna_eg scaffold_109 ensembl transcript 148587 148659 . - . ID=EPrPRAT00000000092;Parent=EPrPRAG00000000092;biotype=tRNA;logic_name=ncrna_eg scaffold_109 ensembl tRNA_gene 149151 149223 . - . ID=EPrPRAG00000000128;biotype=tRNA;description=tRNA-Lys for anticodon UUU [Source:TRNASCAN_SE%3BAcc:tRNA-Lys];external_name=tRNA-Lys;logic_name=ncrna_eg scaffold_109 ensembl transcript 149151 149223 . - . ID=EPrPRAT00000000128;Parent=EPrPRAG00000000128;biotype=tRNA;logic_name=ncrna_eg scaffold_109 ensembl tRNA_gene 148036 148108 . - . ID=EPrPRAG00000000172;biotype=tRNA;description=tRNA-Lys for anticodon UUU [Source:TRNASCAN_SE%3BAcc:tRNA-Lys];external_name=tRNA-Lys;logic_name=ncrna_eg scaffold_109 ensembl transcript 148036 148108 . - . ID=EPrPRAT00000000172;Parent=EPrPRAG00000000172;biotype=tRNA;logic_name=ncrna_eg scaffold_109 . exon 147485 147557 . - . ID=EPrPRAE00000000045;Parent=EPrPRAT00000000045;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_109 . exon 148587 148659 . - . ID=EPrPRAE00000000092;Parent=EPrPRAT00000000092;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_109 . exon 149151 149223 . - . ID=EPrPRAE00000000128;Parent=EPrPRAT00000000128;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_109 . exon 148036 148108 . - . ID=EPrPRAE00000000172;Parent=EPrPRAT00000000172;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_108 1 150424 scaffold_108 . biological_region 584 584 0.999 + . logic_name=eponine scaffold_108 . biological_region 2085 2085 0.999 + . logic_name=eponine scaffold_108 . biological_region 2104 2108 0.999 + . logic_name=eponine scaffold_108 . biological_region 2173 2182 0.999 - . logic_name=eponine scaffold_108 . biological_region 2216 2219 0.999 - . logic_name=eponine scaffold_108 . biological_region 2383 2386 0.999 - . logic_name=eponine scaffold_108 . biological_region 2932 2934 0.999 + . logic_name=eponine scaffold_108 . biological_region 3329 3331 0.999 + . logic_name=eponine scaffold_108 . biological_region 3516 3523 0.999 - . logic_name=eponine scaffold_108 . biological_region 3572 3577 0.999 + . logic_name=eponine scaffold_108 . repeat_region 4808 5280 . - . description=GypsyPi-1c_I-int scaffold_108 . biological_region 4928 4929 0.999 - . logic_name=eponine scaffold_108 . repeat_region 5283 27826 . ? . description=dust scaffold_108 ensembl protein_coding_gene 1507 3773 . - . ID=Phyra84271;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_108000001;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 1507 3773 . - . ID=Phyra84271;Parent=Phyra84271;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 1507 2537 . - 0 ID=Phyra84271;Parent=Phyra84271;rank=4 scaffold_108 . exon 1507 2537 . - . ID=Phyra84271.4;Parent=Phyra84271;constitutive=1;ensembl_phase=1;rank=4 scaffold_108 . CDS 2600 2945 . - 0 ID=Phyra84271;Parent=Phyra84271;rank=3 scaffold_108 . exon 2600 2945 . - . ID=Phyra84271.3;Parent=Phyra84271;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_108 . CDS 3051 3395 . - 0 ID=Phyra84271;Parent=Phyra84271;rank=2 scaffold_108 . exon 3051 3395 . - . ID=Phyra84271.2;Parent=Phyra84271;constitutive=1;rank=2 scaffold_108 . CDS 3420 3773 . - 0 ID=Phyra84271;Parent=Phyra84271;rank=1 scaffold_108 . exon 3420 3773 . - . ID=Phyra84271.1;Parent=Phyra84271;constitutive=1;rank=1 scaffold_108 . repeat_region 5283 27826 . ? . description=dust scaffold_108 . repeat_region 27828 27986 . - . description=GypsyPi-1c_I-int scaffold_108 . repeat_region 30044 30078 . ? . description=trf scaffold_108 . biological_region 33242 33244 0.999 + . logic_name=eponine scaffold_108 . repeat_region 33674 33695 . ? . description=trf scaffold_108 ensembl protein_coding_gene 33453 35256 . + . ID=Phyra84272;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_108000002;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 33453 35256 . + . ID=Phyra84272;Parent=Phyra84272;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 33453 33521 . + 0 ID=Phyra84272;Parent=Phyra84272;rank=1 scaffold_108 . exon 33453 33521 . + . ID=Phyra84272.1;Parent=Phyra84272;constitutive=1;rank=1 scaffold_108 . CDS 33566 33681 . + 0 ID=Phyra84272;Parent=Phyra84272;rank=2 scaffold_108 . exon 33566 33681 . + . ID=Phyra84272.2;Parent=Phyra84272;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_108 . CDS 33845 33860 . + 0 ID=Phyra84272;Parent=Phyra84272;rank=3 scaffold_108 . exon 33845 33860 . + . ID=Phyra84272.3;Parent=Phyra84272;constitutive=1;ensembl_phase=2;rank=3 scaffold_108 . CDS 34267 35256 . + 0 ID=Phyra84272;Parent=Phyra84272;rank=4 scaffold_108 . exon 34267 35256 . + . ID=Phyra84272.4;Parent=Phyra84272;constitutive=1;rank=4 scaffold_108 ensembl protein_coding_gene 37111 37824 . + . ID=Phyra84273;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_108000003;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 37111 37824 . + . ID=Phyra84273;Parent=Phyra84273;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 37111 37824 . + 0 ID=Phyra84273;Parent=Phyra84273;rank=1 scaffold_108 . exon 37111 37824 . + . ID=Phyra84273.1;Parent=Phyra84273;constitutive=1;rank=1 scaffold_108 . repeat_region 38617 40429 . ? . description=dust scaffold_108 . repeat_region 40430 43493 . + . description=Gypsy-2-I_PI-int scaffold_108 . repeat_region 43478 43911 . + . description=Gypsy-2-I_PI-int scaffold_108 . repeat_region 45073 46042 . ? . description=dust scaffold_108 . repeat_region 47004 59263 . ? . description=dust scaffold_108 ensembl pseudogene 46486 46954 . - . ID=Phyra39485;biotype=pseudogene;external_name=gwEuk.108.6.1;logic_name=jgi_phyra1 scaffold_108 ensembl pseudogene 46486 46954 . - . ID=Phyra39485;Parent=Phyra39485;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_108 . exon 46486 46954 . - . ID=Phyra39485.1;Parent=Phyra39485;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_108 . repeat_region 47004 59263 . ? . description=dust scaffold_108 . repeat_region 59379 59495 . + . description=GypsyPi-1c_I-int scaffold_108 . repeat_region 60138 60198 . + . description=GypsyPi-1c_I-int scaffold_108 . biological_region 60536 60539 0.999 + . logic_name=eponine scaffold_108 . biological_region 60587 60590 0.999 + . logic_name=eponine scaffold_108 . biological_region 60613 60618 0.999 - . logic_name=eponine scaffold_108 . biological_region 60667 60671 0.999 + . logic_name=eponine scaffold_108 . biological_region 60688 60693 0.999 + . logic_name=eponine scaffold_108 . repeat_region 61224 62487 . + . description=GypsyPi-1c_I-int scaffold_108 . repeat_region 62776 63089 . + . description=GypsyPi-1c_I-int scaffold_108 . repeat_region 63486 63939 . + . description=GypsyPi-1c_I-int scaffold_108 . repeat_region 64194 64472 . + . description=GypsyPi-1c_I-int scaffold_108 . repeat_region 64643 64917 . ? . description=dust scaffold_108 ensembl protein_coding_gene 60939 63140 . + . ID=Phyra84274;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_108000004;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 60939 63140 . + . ID=Phyra84274;Parent=Phyra84274;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 60939 62326 . + 0 ID=Phyra84274;Parent=Phyra84274;rank=1 scaffold_108 . exon 60939 62326 . + . ID=Phyra84274.1;Parent=Phyra84274;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_108 . CDS 62481 62913 . + 0 ID=Phyra84274;Parent=Phyra84274;rank=2 scaffold_108 . exon 62481 62913 . + . ID=Phyra84274.2;Parent=Phyra84274;constitutive=1;ensembl_phase=2;rank=2 scaffold_108 . CDS 63126 63140 . + 0 ID=Phyra84274;Parent=Phyra84274;rank=3 scaffold_108 . exon 63126 63140 . + . ID=Phyra84274.3;Parent=Phyra84274;constitutive=1;rank=3 scaffold_108 . repeat_region 66735 66992 . - . description=GypsyPi-1c_LTR scaffold_108 ensembl protein_coding_gene 68091 68579 . - . ID=Phyra39486;biotype=protein_coding;external_name=gwEuk.108.7.1;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 68091 68579 . - . ID=Phyra39486;Parent=Phyra39486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 68091 68579 . - 0 ID=Phyra39486;Parent=Phyra39486;rank=1 scaffold_108 . exon 68091 68579 . - . ID=Phyra39486.1;Parent=Phyra39486;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 69115 70248 . + . ID=Phyra84275;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_108000005;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 69115 70248 . + . ID=Phyra84275;Parent=Phyra84275;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 69115 70248 . + 0 ID=Phyra84275;Parent=Phyra84275;rank=1 scaffold_108 . exon 69115 70248 . + . ID=Phyra84275.1;Parent=Phyra84275;constitutive=1;rank=1 scaffold_108 . repeat_region 75688 75980 . - . description=GypsyPi-1c_I-int scaffold_108 . repeat_region 76372 76469 . ? . description=trf scaffold_108 . repeat_region 76379 76428 . ? . description=trf scaffold_108 . repeat_region 76462 76502 . ? . description=trf scaffold_108 . repeat_region 77266 88073 . ? . description=dust scaffold_108 ensembl protein_coding_gene 76958 89388 . - . ID=Phyra84276;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_108000006;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 76958 89388 . - . ID=Phyra84276;Parent=Phyra84276;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 76958 77194 . - 0 ID=Phyra84276;Parent=Phyra84276;rank=2 scaffold_108 . exon 76958 77194 . - . ID=Phyra84276.2;Parent=Phyra84276;constitutive=1;rank=2 scaffold_108 . CDS 88300 89388 . - 0 ID=Phyra84276;Parent=Phyra84276;rank=1 scaffold_108 ensembl pseudogene 91585 92296 . - . ID=Phyra39489;biotype=pseudogene;external_name=gwEuk.108.10.1;logic_name=jgi_phyra1 scaffold_108 ensembl pseudogene 91585 92296 . - . ID=Phyra39489;Parent=Phyra39489;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_108 . exon 91585 92296 . - . ID=Phyra39489.1;Parent=Phyra39489;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_108 . exon 88300 89388 . - . ID=Phyra84276.1;Parent=Phyra84276;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 93542 94264 . + . ID=Phyra84277;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_108000007;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 93542 94264 . + . ID=Phyra84277;Parent=Phyra84277;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 93542 94264 . + 0 ID=Phyra84277;Parent=Phyra84277;rank=1 scaffold_108 . exon 93542 94264 . + . ID=Phyra84277.1;Parent=Phyra84277;constitutive=1;rank=1 scaffold_108 . repeat_region 95065 95079 . ? . description=dust scaffold_108 . biological_region 102931 102934 0.999 + . logic_name=eponine scaffold_108 ensembl protein_coding_gene 102138 103307 . + . ID=Phyra84278;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_108000008;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 102138 103307 . + . ID=Phyra84278;Parent=Phyra84278;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 102138 103307 . + 0 ID=Phyra84278;Parent=Phyra84278;rank=1 scaffold_108 . exon 102138 103307 . + . ID=Phyra84278.1;Parent=Phyra84278;constitutive=1;rank=1 scaffold_108 . repeat_region 104730 104803 . ? . description=trf scaffold_108 . repeat_region 107676 107711 . ? . description=trf scaffold_108 . repeat_region 107678 107711 . ? . description=trf scaffold_108 ensembl protein_coding_gene 104144 104565 . - . ID=Phyra84279;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_108000009;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 104144 104565 . - . ID=Phyra84279;Parent=Phyra84279;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 104144 104286 . - 0 ID=Phyra84279;Parent=Phyra84279;rank=2 scaffold_108 . exon 104144 104286 . - . ID=Phyra84279.2;Parent=Phyra84279;constitutive=1;ensembl_phase=1;rank=2 scaffold_108 . CDS 104373 104565 . - 0 ID=Phyra84279;Parent=Phyra84279;rank=1 scaffold_108 . exon 104373 104565 . - . ID=Phyra84279.1;Parent=Phyra84279;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_108 ensembl protein_coding_gene 104843 107761 . - . ID=Phyra96819;biotype=protein_coding;external_name=C_scaffold_108000001;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 104843 107761 . - . ID=Phyra96819;Parent=Phyra96819;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 104843 105772 . - 0 ID=Phyra96819;Parent=Phyra96819;rank=9 scaffold_108 . exon 104843 105772 . - . ID=Phyra96819.9;Parent=Phyra96819;constitutive=1;rank=9 scaffold_108 . CDS 105833 106179 . - 0 ID=Phyra96819;Parent=Phyra96819;rank=8 scaffold_108 . exon 105833 106179 . - . ID=Phyra96819.8;Parent=Phyra96819;constitutive=1;ensembl_phase=1;rank=8 scaffold_108 . CDS 106269 106350 . - 0 ID=Phyra96819;Parent=Phyra96819;rank=7 scaffold_108 . exon 106269 106350 . - . ID=Phyra96819.7;Parent=Phyra96819;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_108 . CDS 106433 106454 . - 0 ID=Phyra96819;Parent=Phyra96819;rank=6 scaffold_108 . exon 106433 106454 . - . ID=Phyra96819.6;Parent=Phyra96819;constitutive=1;ensembl_phase=2;rank=6 scaffold_108 . CDS 106488 106790 . - 0 ID=Phyra96819;Parent=Phyra96819;rank=5 scaffold_108 . exon 106488 106790 . - . ID=Phyra96819.5;Parent=Phyra96819;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_108 . CDS 106836 106963 . - 0 ID=Phyra96819;Parent=Phyra96819;rank=4 scaffold_108 . exon 106836 106963 . - . ID=Phyra96819.4;Parent=Phyra96819;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_108 . CDS 107048 107198 . - 0 ID=Phyra96819;Parent=Phyra96819;rank=3 scaffold_108 . exon 107048 107198 . - . ID=Phyra96819.3;Parent=Phyra96819;constitutive=1;ensembl_phase=2;rank=3 scaffold_108 . CDS 107262 107293 . - 0 ID=Phyra96819;Parent=Phyra96819;rank=2 scaffold_108 . exon 107262 107293 . - . ID=Phyra96819.2;Parent=Phyra96819;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_108 . CDS 107366 107761 . - 0 ID=Phyra96819;Parent=Phyra96819;rank=1 scaffold_108 . exon 107366 107761 . - . ID=Phyra96819.1;Parent=Phyra96819;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 108049 112902 . - . ID=Phyra96820;biotype=protein_coding;external_name=C_scaffold_108000002;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 108049 112902 . - . ID=Phyra96820;Parent=Phyra96820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 108049 108249 . - 0 ID=Phyra96820;Parent=Phyra96820;rank=11 scaffold_108 . exon 108049 108249 . - . ID=Phyra96820.11;Parent=Phyra96820;constitutive=1;rank=11 scaffold_108 . CDS 108310 108468 . - 0 ID=Phyra96820;Parent=Phyra96820;rank=10 scaffold_108 . exon 108310 108468 . - . ID=Phyra96820.10;Parent=Phyra96820;constitutive=1;rank=10 scaffold_108 . CDS 108550 108635 . - 0 ID=Phyra96820;Parent=Phyra96820;rank=9 scaffold_108 . exon 108550 108635 . - . ID=Phyra96820.9;Parent=Phyra96820;constitutive=1;ensembl_phase=1;rank=9 scaffold_108 . CDS 108750 109407 . - 0 ID=Phyra96820;Parent=Phyra96820;rank=8 scaffold_108 . exon 108750 109407 . - . ID=Phyra96820.8;Parent=Phyra96820;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_108 . CDS 109546 109732 . - 0 ID=Phyra96820;Parent=Phyra96820;rank=7 scaffold_108 . exon 109546 109732 . - . ID=Phyra96820.7;Parent=Phyra96820;constitutive=1;ensembl_phase=2;rank=7 scaffold_108 . CDS 109805 110288 . - 0 ID=Phyra96820;Parent=Phyra96820;rank=6 scaffold_108 . exon 109805 110288 . - . ID=Phyra96820.6;Parent=Phyra96820;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_108 . CDS 110385 110614 . - 0 ID=Phyra96820;Parent=Phyra96820;rank=5 scaffold_108 . exon 110385 110614 . - . ID=Phyra96820.5;Parent=Phyra96820;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_108 . CDS 110651 110870 . - 0 ID=Phyra96820;Parent=Phyra96820;rank=4 scaffold_108 . exon 110651 110870 . - . ID=Phyra96820.4;Parent=Phyra96820;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_108 . CDS 110910 111904 . - 0 ID=Phyra96820;Parent=Phyra96820;rank=3 scaffold_108 . exon 110910 111904 . - . ID=Phyra96820.3;Parent=Phyra96820;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_108 . CDS 111989 112092 . - 0 ID=Phyra96820;Parent=Phyra96820;rank=2 scaffold_108 . exon 111989 112092 . - . ID=Phyra96820.2;Parent=Phyra96820;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_108 . CDS 112246 112902 . - 0 ID=Phyra96820;Parent=Phyra96820;rank=1 scaffold_108 . exon 112246 112902 . - . ID=Phyra96820.1;Parent=Phyra96820;constitutive=1;rank=1 scaffold_108 . biological_region 113096 113098 0.999 + . logic_name=eponine scaffold_108 . biological_region 113725 113726 0.999 - . logic_name=eponine scaffold_108 . biological_region 113977 113982 0.999 - . logic_name=eponine scaffold_108 . biological_region 114024 114025 0.999 - . logic_name=eponine scaffold_108 . biological_region 115151 115154 0.999 - . logic_name=eponine scaffold_108 . biological_region 115415 115415 0.999 - . logic_name=eponine scaffold_108 . biological_region 119715 119716 0.999 + . logic_name=eponine scaffold_108 . repeat_region 122068 122081 . ? . description=dust scaffold_108 ensembl protein_coding_gene 113612 114571 . - . ID=Phyra84282;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_108000012;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 113612 114571 . - . ID=Phyra84282;Parent=Phyra84282;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 113612 114571 . - 0 ID=Phyra84282;Parent=Phyra84282;rank=1 scaffold_108 . exon 113612 114571 . - . ID=Phyra84282.1;Parent=Phyra84282;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 119015 120253 . + . ID=Phyra84285;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_108000015;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 119015 120253 . + . ID=Phyra84285;Parent=Phyra84285;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 119015 120253 . + 0 ID=Phyra84285;Parent=Phyra84285;rank=1 scaffold_108 . exon 119015 120253 . + . ID=Phyra84285.1;Parent=Phyra84285;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 115224 118409 . + . ID=Phyra96821;biotype=protein_coding;external_name=C_scaffold_108000003;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 115224 118409 . + . ID=Phyra96821;Parent=Phyra96821;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 115224 116636 . + 0 ID=Phyra96821;Parent=Phyra96821;rank=1 scaffold_108 . exon 115224 116636 . + . ID=Phyra96821.1;Parent=Phyra96821;constitutive=1;rank=1 scaffold_108 . CDS 116686 116769 . + 0 ID=Phyra96821;Parent=Phyra96821;rank=2 scaffold_108 . exon 116686 116769 . + . ID=Phyra96821.2;Parent=Phyra96821;constitutive=1;rank=2 scaffold_108 . CDS 116907 118409 . + 0 ID=Phyra96821;Parent=Phyra96821;rank=3 scaffold_108 . exon 116907 118409 . + . ID=Phyra96821.3;Parent=Phyra96821;constitutive=1;rank=3 scaffold_108 ensembl protein_coding_gene 120411 122496 . - . ID=Phyra96824;biotype=protein_coding;external_name=C_scaffold_108000006;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 120411 122496 . - . ID=Phyra96824;Parent=Phyra96824;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 120411 120813 . - 0 ID=Phyra96824;Parent=Phyra96824;rank=6 scaffold_108 . exon 120411 120813 . - . ID=Phyra96824.6;Parent=Phyra96824;constitutive=1;ensembl_phase=2;rank=6 scaffold_108 . CDS 121220 121352 . - 0 ID=Phyra96824;Parent=Phyra96824;rank=5 scaffold_108 . exon 121220 121352 . - . ID=Phyra96824.5;Parent=Phyra96824;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_108 . CDS 121468 121499 . - 0 ID=Phyra96824;Parent=Phyra96824;rank=4 scaffold_108 . exon 121468 121499 . - . ID=Phyra96824.4;Parent=Phyra96824;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_108 . CDS 121679 121757 . - 0 ID=Phyra96824;Parent=Phyra96824;rank=3 scaffold_108 . exon 121679 121757 . - . ID=Phyra96824.3;Parent=Phyra96824;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_108 . CDS 121818 122274 . - 0 ID=Phyra96824;Parent=Phyra96824;rank=2 scaffold_108 . exon 121818 122274 . - . ID=Phyra96824.2;Parent=Phyra96824;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_108 . CDS 122344 122496 . - 0 ID=Phyra96824;Parent=Phyra96824;rank=1 scaffold_108 . repeat_region 123998 124086 . ? . description=trf scaffold_108 . repeat_region 124314 124351 . ? . description=trf scaffold_108 . repeat_region 126723 126886 . ? . description=trf scaffold_108 . repeat_region 127546 127753 . ? . description=trf scaffold_108 ensembl protein_coding_gene 123774 124389 . + . ID=Phyra84287;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_108000017;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 123774 124389 . + . ID=Phyra84287;Parent=Phyra84287;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 123774 123791 . + 0 ID=Phyra84287;Parent=Phyra84287;rank=1 scaffold_108 . exon 123774 123791 . + . ID=Phyra84287.1;Parent=Phyra84287;constitutive=1;rank=1 scaffold_108 . CDS 123858 124097 . + 0 ID=Phyra84287;Parent=Phyra84287;rank=2 scaffold_108 . exon 123858 124097 . + . ID=Phyra84287.2;Parent=Phyra84287;constitutive=1;rank=2 scaffold_108 . CDS 124174 124389 . + 0 ID=Phyra84287;Parent=Phyra84287;rank=3 scaffold_108 . exon 124174 124389 . + . ID=Phyra84287.3;Parent=Phyra84287;constitutive=1;rank=3 scaffold_108 . exon 122344 122496 . - . ID=Phyra96824.1;Parent=Phyra96824;constitutive=1;rank=1 scaffold_108 . biological_region 131768 131768 0.999 + . logic_name=eponine scaffold_108 . biological_region 136657 136659 0.999 + . logic_name=eponine scaffold_108 . biological_region 136732 136733 0.999 + . logic_name=eponine scaffold_108 . biological_region 140215 140216 0.999 - . logic_name=eponine scaffold_108 ensembl protein_coding_gene 133375 134613 . + . ID=Phyra72210;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_108000002;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 133375 134613 . + . ID=Phyra72210;Parent=Phyra72210;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 133375 133536 . + 0 ID=Phyra72210;Parent=Phyra72210;rank=1 scaffold_108 . exon 133375 133536 . + . ID=Phyra72210.1;Parent=Phyra72210;constitutive=1;rank=1 scaffold_108 . CDS 133570 134613 . + 0 ID=Phyra72210;Parent=Phyra72210;rank=2 scaffold_108 . exon 133570 134613 . + . ID=Phyra72210.2;Parent=Phyra72210;constitutive=1;rank=2 scaffold_108 ensembl protein_coding_gene 136472 136917 . + . ID=Phyra72211;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_108000003;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 136472 136917 . + . ID=Phyra72211;Parent=Phyra72211;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 136472 136498 . + 0 ID=Phyra72211;Parent=Phyra72211;rank=1 scaffold_108 . exon 136472 136498 . + . ID=Phyra72211.1;Parent=Phyra72211;constitutive=1;rank=1 scaffold_108 . CDS 136576 136917 . + 0 ID=Phyra72211;Parent=Phyra72211;rank=2 scaffold_108 . exon 136576 136917 . + . ID=Phyra72211.2;Parent=Phyra72211;constitutive=1;rank=2 scaffold_108 ensembl protein_coding_gene 138156 138911 . - . ID=Phyra72212;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_108000004;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 138156 138911 . - . ID=Phyra72212;Parent=Phyra72212;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 138156 138911 . - 0 ID=Phyra72212;Parent=Phyra72212;rank=1 scaffold_108 . exon 138156 138911 . - . ID=Phyra72212.1;Parent=Phyra72212;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 139519 140715 . + . ID=Phyra84291;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_108000021;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 139519 140715 . + . ID=Phyra84291;Parent=Phyra84291;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 139519 140715 . + 0 ID=Phyra84291;Parent=Phyra84291;rank=1 scaffold_108 . exon 139519 140715 . + . ID=Phyra84291.1;Parent=Phyra84291;constitutive=1;rank=1 scaffold_108 . repeat_region 143758 143799 . ? . description=dust scaffold_108 ensembl protein_coding_gene 147375 149045 . + . ID=Phyra72213;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_108000005;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 147375 149045 . + . ID=Phyra72213;Parent=Phyra72213;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 147375 149045 . + 0 ID=Phyra72213;Parent=Phyra72213;rank=1 scaffold_108 . exon 147375 149045 . + . ID=Phyra72213.1;Parent=Phyra72213;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 141059 143845 . - . ID=Phyra84292;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_108000022;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 141059 143845 . - . ID=Phyra84292;Parent=Phyra84292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 141059 143845 . - 0 ID=Phyra84292;Parent=Phyra84292;rank=1 scaffold_108 . exon 141059 143845 . - . ID=Phyra84292.1;Parent=Phyra84292;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 149222 150245 . - . ID=Phyra84294;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_108000024;logic_name=jgi_phyra1 scaffold_108 ensembl transcript 149222 150245 . - . ID=Phyra84294;Parent=Phyra84294;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_108 . CDS 149222 149563 . - 0 ID=Phyra84294;Parent=Phyra84294;rank=3 scaffold_108 . exon 149222 149563 . - . ID=Phyra84294.3;Parent=Phyra84294;constitutive=1;rank=3 scaffold_108 . CDS 149703 150002 . - 0 ID=Phyra84294;Parent=Phyra84294;rank=2 scaffold_108 . exon 149703 150002 . - . ID=Phyra84294.2;Parent=Phyra84294;constitutive=1;rank=2 scaffold_108 . CDS 150078 150245 . - 0 ID=Phyra84294;Parent=Phyra84294;rank=1 scaffold_108 . exon 150078 150245 . - . ID=Phyra84294.1;Parent=Phyra84294;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_97 1 152944 scaffold_97 . biological_region 7774 7777 0.999 - . logic_name=eponine scaffold_97 . repeat_region 9237 9256 . ? . description=trf scaffold_97 ensembl protein_coding_gene 94 1434 . - . ID=Phyra83802;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000001;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 94 1434 . - . ID=Phyra83802;Parent=Phyra83802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 94 1434 . - 0 ID=Phyra83802;Parent=Phyra83802;rank=1 scaffold_97 . exon 94 1434 . - . ID=Phyra83802.1;Parent=Phyra83802;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 2094 4330 . + . ID=Phyra83803;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000002;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 2094 4330 . + . ID=Phyra83803;Parent=Phyra83803;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 2094 2252 . + 0 ID=Phyra83803;Parent=Phyra83803;rank=1 scaffold_97 . exon 2094 2252 . + . ID=Phyra83803.1;Parent=Phyra83803;constitutive=1;rank=1 scaffold_97 . CDS 2332 2385 . + 0 ID=Phyra83803;Parent=Phyra83803;rank=2 scaffold_97 . exon 2332 2385 . + . ID=Phyra83803.2;Parent=Phyra83803;constitutive=1;rank=2 scaffold_97 . CDS 2631 3266 . + 0 ID=Phyra83803;Parent=Phyra83803;rank=3 scaffold_97 . exon 2631 3266 . + . ID=Phyra83803.3;Parent=Phyra83803;constitutive=1;rank=3 scaffold_97 . CDS 3441 4063 . + 0 ID=Phyra83803;Parent=Phyra83803;rank=4 scaffold_97 . exon 3441 4063 . + . ID=Phyra83803.4;Parent=Phyra83803;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_97 . CDS 4267 4330 . + 0 ID=Phyra83803;Parent=Phyra83803;rank=5 scaffold_97 . exon 4267 4330 . + . ID=Phyra83803.5;Parent=Phyra83803;constitutive=1;ensembl_phase=2;rank=5 scaffold_97 ensembl protein_coding_gene 7513 9130 . - . ID=Phyra83804;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000003;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 7513 9130 . - . ID=Phyra83804;Parent=Phyra83804;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 7513 8423 . - 0 ID=Phyra83804;Parent=Phyra83804;rank=3 scaffold_97 . exon 7513 8423 . - . ID=Phyra83804.3;Parent=Phyra83804;constitutive=1;ensembl_phase=1;rank=3 scaffold_97 . CDS 8489 8937 . - 0 ID=Phyra83804;Parent=Phyra83804;rank=2 scaffold_97 . exon 8489 8937 . - . ID=Phyra83804.2;Parent=Phyra83804;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_97 . CDS 9000 9130 . - 0 ID=Phyra83804;Parent=Phyra83804;rank=1 scaffold_97 . exon 9000 9130 . - . ID=Phyra83804.1;Parent=Phyra83804;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 . repeat_region 16640 36147 . ? . description=dust scaffold_97 ensembl protein_coding_gene 9688 12061 . - . ID=Phyra83805;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000004;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 9688 12061 . - . ID=Phyra83805;Parent=Phyra83805;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 9688 10377 . - 0 ID=Phyra83805;Parent=Phyra83805;rank=7 scaffold_97 . exon 9688 10377 . - . ID=Phyra83805.7;Parent=Phyra83805;constitutive=1;rank=7 scaffold_97 . CDS 10462 10851 . - 0 ID=Phyra83805;Parent=Phyra83805;rank=6 scaffold_97 . exon 10462 10851 . - . ID=Phyra83805.6;Parent=Phyra83805;constitutive=1;rank=6 scaffold_97 . CDS 10921 11108 . - 0 ID=Phyra83805;Parent=Phyra83805;rank=5 scaffold_97 . exon 10921 11108 . - . ID=Phyra83805.5;Parent=Phyra83805;constitutive=1;ensembl_phase=1;rank=5 scaffold_97 . CDS 11212 11334 . - 0 ID=Phyra83805;Parent=Phyra83805;rank=4 scaffold_97 . exon 11212 11334 . - . ID=Phyra83805.4;Parent=Phyra83805;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_97 . CDS 11416 11675 . - 0 ID=Phyra83805;Parent=Phyra83805;rank=3 scaffold_97 . exon 11416 11675 . - . ID=Phyra83805.3;Parent=Phyra83805;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_97 . CDS 11753 11844 . - 0 ID=Phyra83805;Parent=Phyra83805;rank=2 scaffold_97 . exon 11753 11844 . - . ID=Phyra83805.2;Parent=Phyra83805;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_97 . CDS 11912 12061 . - 0 ID=Phyra83805;Parent=Phyra83805;rank=1 scaffold_97 . exon 11912 12061 . - . ID=Phyra83805.1;Parent=Phyra83805;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 13323 15751 . + . ID=Phyra83806;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000005;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 13323 15751 . + . ID=Phyra83806;Parent=Phyra83806;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 13323 15563 . + 0 ID=Phyra83806;Parent=Phyra83806;rank=1 scaffold_97 . exon 13323 15563 . + . ID=Phyra83806.1;Parent=Phyra83806;constitutive=1;rank=1 scaffold_97 . CDS 15643 15662 . + 0 ID=Phyra83806;Parent=Phyra83806;rank=2 scaffold_97 . exon 15643 15662 . + . ID=Phyra83806.2;Parent=Phyra83806;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_97 . CDS 15697 15751 . + 0 ID=Phyra83806;Parent=Phyra83806;rank=3 scaffold_97 . exon 15697 15751 . + . ID=Phyra83806.3;Parent=Phyra83806;constitutive=1;ensembl_phase=2;rank=3 scaffold_97 . repeat_region 16640 36147 . ? . description=dust scaffold_97 . biological_region 36382 36383 0.999 + . logic_name=eponine scaffold_97 . biological_region 36896 36899 0.999 + . logic_name=eponine scaffold_97 . biological_region 36939 36940 0.999 - . logic_name=eponine scaffold_97 . biological_region 36968 36973 0.999 - . logic_name=eponine scaffold_97 . repeat_region 37579 42026 . ? . description=dust scaffold_97 ensembl protein_coding_gene 36255 37381 . + . ID=Phyra83807;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000006;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 36255 37381 . + . ID=Phyra83807;Parent=Phyra83807;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 36255 37277 . + 0 ID=Phyra83807;Parent=Phyra83807;rank=1 scaffold_97 . exon 36255 37277 . + . ID=Phyra83807.1;Parent=Phyra83807;constitutive=1;rank=1 scaffold_97 . CDS 37340 37381 . + 0 ID=Phyra83807;Parent=Phyra83807;rank=2 scaffold_97 . exon 37340 37381 . + . ID=Phyra83807.2;Parent=Phyra83807;constitutive=1;rank=2 scaffold_97 . repeat_region 44587 44622 . ? . description=trf scaffold_97 ensembl protein_coding_gene 47460 49608 . + . ID=Phyra72160;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_97000001;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 47460 49608 . + . ID=Phyra72160;Parent=Phyra72160;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 47460 47525 . + 0 ID=Phyra72160;Parent=Phyra72160;rank=1 scaffold_97 . exon 47460 47525 . + . ID=Phyra72160.1;Parent=Phyra72160;constitutive=1;rank=1 scaffold_97 . CDS 47731 48052 . + 0 ID=Phyra72160;Parent=Phyra72160;rank=2 scaffold_97 . exon 47731 48052 . + . ID=Phyra72160.2;Parent=Phyra72160;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_97 . CDS 48119 48276 . + 0 ID=Phyra72160;Parent=Phyra72160;rank=3 scaffold_97 . CDS 48342 49017 . + 0 ID=Phyra72160;Parent=Phyra72160;rank=4 scaffold_97 . CDS 49076 49608 . + 0 ID=Phyra72160;Parent=Phyra72160;rank=5 scaffold_97 ensembl protein_coding_gene 42515 43048 . - . ID=Phyra83808;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000007;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 42515 43048 . - . ID=Phyra83808;Parent=Phyra83808;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 42515 43048 . - 0 ID=Phyra83808;Parent=Phyra83808;rank=1 scaffold_97 . exon 42515 43048 . - . ID=Phyra83808.1;Parent=Phyra83808;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 45451 45984 . + . ID=Phyra83809;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000008;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 45451 45984 . + . ID=Phyra83809;Parent=Phyra83809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 45451 45984 . + 0 ID=Phyra83809;Parent=Phyra83809;rank=1 scaffold_97 . exon 45451 45984 . + . ID=Phyra83809.1;Parent=Phyra83809;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 46514 47317 . - . ID=Phyra83810;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000009;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 46514 47317 . - . ID=Phyra83810;Parent=Phyra83810;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 46514 47317 . - 0 ID=Phyra83810;Parent=Phyra83810;rank=1 scaffold_97 . exon 46514 47317 . - . ID=Phyra83810.1;Parent=Phyra83810;constitutive=1;rank=1 scaffold_97 . biological_region 50590 50592 0.999 + . logic_name=eponine scaffold_97 . biological_region 50701 50705 0.999 + . logic_name=eponine scaffold_97 . repeat_region 51283 51292 . ? . description=dust scaffold_97 . repeat_region 55139 55160 . ? . description=dust scaffold_97 . repeat_region 56206 56228 . ? . description=dust scaffold_97 ensembl tRNA_gene 55668 55771 . + . ID=EPrPRAG00000000020;biotype=tRNA;description=tRNA-Tyr for anticodon GUA [Source:TRNASCAN_SE%3BAcc:tRNA-Tyr];external_name=tRNA-Tyr;logic_name=ncrna_eg scaffold_97 ensembl transcript 55668 55771 . + . ID=EPrPRAT00000000020;Parent=EPrPRAG00000000020;biotype=tRNA;logic_name=ncrna_eg scaffold_97 ensembl tRNA_gene 54885 54988 . + . ID=EPrPRAG00000000182;biotype=tRNA;description=tRNA-Tyr for anticodon GUA [Source:TRNASCAN_SE%3BAcc:tRNA-Tyr];external_name=tRNA-Tyr;logic_name=ncrna_eg scaffold_97 ensembl transcript 54885 54988 . + . ID=EPrPRAT00000000182;Parent=EPrPRAG00000000182;biotype=tRNA;logic_name=ncrna_eg scaffold_97 . exon 55668 55771 . + . ID=EPrPRAE00000000020;Parent=EPrPRAT00000000020;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 . exon 54885 54988 . + . ID=EPrPRAE00000000182;Parent=EPrPRAT00000000182;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 . exon 48119 48276 . + . ID=Phyra72160.3;Parent=Phyra72160;constitutive=1;ensembl_phase=1;rank=3 scaffold_97 . exon 48342 49017 . + . ID=Phyra72160.4;Parent=Phyra72160;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_97 . exon 49076 49608 . + . ID=Phyra72160.5;Parent=Phyra72160;constitutive=1;ensembl_phase=1;rank=5 scaffold_97 ensembl protein_coding_gene 49737 51116 . - . ID=Phyra83812;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000011;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 49737 51116 . - . ID=Phyra83812;Parent=Phyra83812;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 49737 51116 . - 0 ID=Phyra83812;Parent=Phyra83812;rank=1 scaffold_97 . exon 49737 51116 . - . ID=Phyra83812.1;Parent=Phyra83812;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 61347 62711 . + . ID=Phyra54862;biotype=protein_coding;external_name=gwEuk.97.12.1;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 61347 62711 . + . ID=Phyra54862;Parent=Phyra54862;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 61347 62711 . + 0 ID=Phyra54862;Parent=Phyra54862;rank=1 scaffold_97 . exon 61347 62711 . + . ID=Phyra54862.1;Parent=Phyra54862;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 59864 60627 . - . ID=Phyra83813;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000012;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 59864 60627 . - . ID=Phyra83813;Parent=Phyra83813;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 59864 60226 . - 0 ID=Phyra83813;Parent=Phyra83813;rank=2 scaffold_97 . exon 59864 60226 . - . ID=Phyra83813.2;Parent=Phyra83813;constitutive=1;rank=2 scaffold_97 . CDS 60454 60627 . - 0 ID=Phyra83813;Parent=Phyra83813;rank=1 scaffold_97 . exon 60454 60627 . - . ID=Phyra83813.1;Parent=Phyra83813;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 64403 70064 . - . ID=Phyra96680;biotype=protein_coding;external_name=C_scaffold_97000001;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 64403 70064 . - . ID=Phyra96680;Parent=Phyra96680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 64403 65622 . - 0 ID=Phyra96680;Parent=Phyra96680;rank=7 scaffold_97 . exon 64403 65622 . - . ID=Phyra96680.7;Parent=Phyra96680;constitutive=1;ensembl_phase=1;rank=7 scaffold_97 . CDS 65642 65870 . - 0 ID=Phyra96680;Parent=Phyra96680;rank=6 scaffold_97 . exon 65642 65870 . - . ID=Phyra96680.6;Parent=Phyra96680;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_97 . CDS 67019 67313 . - 0 ID=Phyra96680;Parent=Phyra96680;rank=5 scaffold_97 . CDS 67374 68726 . - 0 ID=Phyra96680;Parent=Phyra96680;rank=4 scaffold_97 . CDS 69064 69465 . - 0 ID=Phyra96680;Parent=Phyra96680;rank=3 scaffold_97 . CDS 69592 69907 . - 0 ID=Phyra96680;Parent=Phyra96680;rank=2 scaffold_97 . CDS 70028 70064 . - 0 ID=Phyra96680;Parent=Phyra96680;rank=1 scaffold_97 . biological_region 68745 68747 0.999 - . logic_name=eponine scaffold_97 . repeat_region 68812 68854 . ? . description=trf scaffold_97 . biological_region 69168 69168 0.999 + . logic_name=eponine scaffold_97 ensembl protein_coding_gene 70660 72223 . - . ID=Phyra83818;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000017;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 70660 72223 . - . ID=Phyra83818;Parent=Phyra83818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 70660 70887 . - 0 ID=Phyra83818;Parent=Phyra83818;rank=8 scaffold_97 . exon 70660 70887 . - . ID=Phyra83818.8;Parent=Phyra83818;constitutive=1;rank=8 scaffold_97 . CDS 70961 70999 . - 0 ID=Phyra83818;Parent=Phyra83818;rank=7 scaffold_97 . exon 70961 70999 . - . ID=Phyra83818.7;Parent=Phyra83818;constitutive=1;rank=7 scaffold_97 . CDS 71075 71134 . - 0 ID=Phyra83818;Parent=Phyra83818;rank=6 scaffold_97 . exon 71075 71134 . - . ID=Phyra83818.6;Parent=Phyra83818;constitutive=1;rank=6 scaffold_97 . CDS 71207 71470 . - 0 ID=Phyra83818;Parent=Phyra83818;rank=5 scaffold_97 . exon 71207 71470 . - . ID=Phyra83818.5;Parent=Phyra83818;constitutive=1;rank=5 scaffold_97 . CDS 71545 71580 . - 0 ID=Phyra83818;Parent=Phyra83818;rank=4 scaffold_97 . exon 71545 71580 . - . ID=Phyra83818.4;Parent=Phyra83818;constitutive=1;rank=4 scaffold_97 . CDS 71649 71837 . - 0 ID=Phyra83818;Parent=Phyra83818;rank=3 scaffold_97 . exon 71649 71837 . - . ID=Phyra83818.3;Parent=Phyra83818;constitutive=1;rank=3 scaffold_97 . CDS 71863 71945 . - 0 ID=Phyra83818;Parent=Phyra83818;rank=2 scaffold_97 . exon 71863 71945 . - . ID=Phyra83818.2;Parent=Phyra83818;constitutive=1;ensembl_phase=1;rank=2 scaffold_97 . CDS 72016 72223 . - 0 ID=Phyra83818;Parent=Phyra83818;rank=1 scaffold_97 . exon 72016 72223 . - . ID=Phyra83818.1;Parent=Phyra83818;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 ensembl protein_coding_gene 72360 74104 . + . ID=Phyra83819;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000018;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 72360 74104 . + . ID=Phyra83819;Parent=Phyra83819;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 72360 72404 . + 0 ID=Phyra83819;Parent=Phyra83819;rank=1 scaffold_97 . exon 72360 72404 . + . ID=Phyra83819.1;Parent=Phyra83819;constitutive=1;rank=1 scaffold_97 . CDS 72550 72675 . + 0 ID=Phyra83819;Parent=Phyra83819;rank=2 scaffold_97 . exon 72550 72675 . + . ID=Phyra83819.2;Parent=Phyra83819;constitutive=1;rank=2 scaffold_97 . CDS 72767 72928 . + 0 ID=Phyra83819;Parent=Phyra83819;rank=3 scaffold_97 . exon 72767 72928 . + . ID=Phyra83819.3;Parent=Phyra83819;constitutive=1;rank=3 scaffold_97 . CDS 73003 73944 . + 0 ID=Phyra83819;Parent=Phyra83819;rank=4 scaffold_97 . exon 73003 73944 . + . ID=Phyra83819.4;Parent=Phyra83819;constitutive=1;rank=4 scaffold_97 . CDS 74012 74104 . + 0 ID=Phyra83819;Parent=Phyra83819;rank=5 scaffold_97 . exon 74012 74104 . + . ID=Phyra83819.5;Parent=Phyra83819;constitutive=1;rank=5 scaffold_97 ensembl protein_coding_gene 74338 76573 . - . ID=Phyra83820;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000019;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 74338 76573 . - . ID=Phyra83820;Parent=Phyra83820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 74338 74412 . - 0 ID=Phyra83820;Parent=Phyra83820;rank=9 scaffold_97 . exon 74338 74412 . - . ID=Phyra83820.9;Parent=Phyra83820;constitutive=1;rank=9 scaffold_97 . CDS 74475 74531 . - 0 ID=Phyra83820;Parent=Phyra83820;rank=8 scaffold_97 . exon 74475 74531 . - . ID=Phyra83820.8;Parent=Phyra83820;constitutive=1;rank=8 scaffold_97 . CDS 74602 74687 . - 0 ID=Phyra83820;Parent=Phyra83820;rank=7 scaffold_97 . exon 74602 74687 . - . ID=Phyra83820.7;Parent=Phyra83820;constitutive=1;ensembl_phase=1;rank=7 scaffold_97 . CDS 74783 74883 . - 0 ID=Phyra83820;Parent=Phyra83820;rank=6 scaffold_97 . exon 74783 74883 . - . ID=Phyra83820.6;Parent=Phyra83820;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_97 . CDS 74962 75044 . - 0 ID=Phyra83820;Parent=Phyra83820;rank=5 scaffold_97 . exon 74962 75044 . - . ID=Phyra83820.5;Parent=Phyra83820;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_97 . CDS 75161 75214 . - 0 ID=Phyra83820;Parent=Phyra83820;rank=4 scaffold_97 . exon 75161 75214 . - . ID=Phyra83820.4;Parent=Phyra83820;constitutive=1;rank=4 scaffold_97 . CDS 75472 75614 . - 0 ID=Phyra83820;Parent=Phyra83820;rank=3 scaffold_97 . exon 75472 75614 . - . ID=Phyra83820.3;Parent=Phyra83820;constitutive=1;ensembl_phase=1;rank=3 scaffold_97 . CDS 75692 76401 . - 0 ID=Phyra83820;Parent=Phyra83820;rank=2 scaffold_97 . exon 75692 76401 . - . ID=Phyra83820.2;Parent=Phyra83820;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_97 . CDS 76539 76573 . - 0 ID=Phyra83820;Parent=Phyra83820;rank=1 scaffold_97 . exon 67019 67313 . - . ID=Phyra96680.5;Parent=Phyra96680;constitutive=1;ensembl_phase=2;rank=5 scaffold_97 . exon 67374 68726 . - . ID=Phyra96680.4;Parent=Phyra96680;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_97 . exon 69064 69465 . - . ID=Phyra96680.3;Parent=Phyra96680;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_97 . exon 69592 69907 . - . ID=Phyra96680.2;Parent=Phyra96680;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_97 . exon 70028 70064 . - . ID=Phyra96680.1;Parent=Phyra96680;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 . repeat_region 79875 79883 . ? . description=dust scaffold_97 . repeat_region 80754 80803 . ? . description=dust scaffold_97 . repeat_region 81788 81837 . ? . description=dust scaffold_97 . repeat_region 82758 82807 . ? . description=dust scaffold_97 . repeat_region 83605 83654 . ? . description=dust scaffold_97 . repeat_region 84719 84768 . ? . description=dust scaffold_97 . repeat_region 85704 85712 . ? . description=dust scaffold_97 ensembl protein_coding_gene 85889 86870 . - . ID=Phyra72161;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_97000002;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 85889 86870 . - . ID=Phyra72161;Parent=Phyra72161;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 85889 86112 . - 0 ID=Phyra72161;Parent=Phyra72161;rank=2 scaffold_97 . exon 85889 86112 . - . ID=Phyra72161.2;Parent=Phyra72161;constitutive=1;ensembl_phase=1;rank=2 scaffold_97 . CDS 86177 86870 . - 0 ID=Phyra72161;Parent=Phyra72161;rank=1 scaffold_97 . exon 76539 76573 . - . ID=Phyra83820.1;Parent=Phyra83820;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 ensembl protein_coding_gene 76740 79752 . + . ID=Phyra83821;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000020;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 76740 79752 . + . ID=Phyra83821;Parent=Phyra83821;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 76740 76947 . + 0 ID=Phyra83821;Parent=Phyra83821;rank=1 scaffold_97 . exon 76740 76947 . + . ID=Phyra83821.1;Parent=Phyra83821;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 . CDS 77007 77456 . + 0 ID=Phyra83821;Parent=Phyra83821;rank=2 scaffold_97 . exon 77007 77456 . + . ID=Phyra83821.2;Parent=Phyra83821;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_97 . CDS 77554 77709 . + 0 ID=Phyra83821;Parent=Phyra83821;rank=3 scaffold_97 . exon 77554 77709 . + . ID=Phyra83821.3;Parent=Phyra83821;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_97 . CDS 77903 77918 . + 0 ID=Phyra83821;Parent=Phyra83821;rank=4 scaffold_97 . exon 77903 77918 . + . ID=Phyra83821.4;Parent=Phyra83821;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_97 . CDS 78230 78275 . + 0 ID=Phyra83821;Parent=Phyra83821;rank=5 scaffold_97 . exon 78230 78275 . + . ID=Phyra83821.5;Parent=Phyra83821;constitutive=1;ensembl_phase=2;rank=5 scaffold_97 . CDS 78346 79752 . + 0 ID=Phyra83821;Parent=Phyra83821;rank=6 scaffold_97 . exon 78346 79752 . + . ID=Phyra83821.6;Parent=Phyra83821;constitutive=1;rank=6 scaffold_97 ensembl protein_coding_gene 80060 80726 . - . ID=Phyra83822;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000021;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 80060 80726 . - . ID=Phyra83822;Parent=Phyra83822;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 80060 80283 . - 0 ID=Phyra83822;Parent=Phyra83822;rank=2 scaffold_97 . exon 80060 80283 . - . ID=Phyra83822.2;Parent=Phyra83822;constitutive=1;ensembl_phase=1;rank=2 scaffold_97 . CDS 80348 80726 . - 0 ID=Phyra83822;Parent=Phyra83822;rank=1 scaffold_97 . exon 80348 80726 . - . ID=Phyra83822.1;Parent=Phyra83822;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 ensembl protein_coding_gene 83680 84497 . - . ID=Phyra83823;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000022;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 83680 84497 . - . ID=Phyra83823;Parent=Phyra83823;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 83680 83961 . - 0 ID=Phyra83823;Parent=Phyra83823;rank=3 scaffold_97 . exon 83680 83961 . - . ID=Phyra83823.3;Parent=Phyra83823;constitutive=1;rank=3 scaffold_97 . CDS 84022 84169 . - 0 ID=Phyra83823;Parent=Phyra83823;rank=2 scaffold_97 . exon 84022 84169 . - . ID=Phyra83823.2;Parent=Phyra83823;constitutive=1;ensembl_phase=2;rank=2 scaffold_97 . CDS 84253 84497 . - 0 ID=Phyra83823;Parent=Phyra83823;rank=1 scaffold_97 . exon 84253 84497 . - . ID=Phyra83823.1;Parent=Phyra83823;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 ensembl protein_coding_gene 84901 85581 . + . ID=Phyra83824;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000023;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 84901 85581 . + . ID=Phyra83824;Parent=Phyra83824;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 84901 85581 . + 0 ID=Phyra83824;Parent=Phyra83824;rank=1 scaffold_97 . exon 84901 85581 . + . ID=Phyra83824.1;Parent=Phyra83824;constitutive=1;rank=1 scaffold_97 . biological_region 86251 86253 0.999 + . logic_name=eponine scaffold_97 . biological_region 86339 86343 0.999 - . logic_name=eponine scaffold_97 . biological_region 86453 86456 0.999 + . logic_name=eponine scaffold_97 . biological_region 86616 86621 0.999 + . logic_name=eponine scaffold_97 . biological_region 88194 88195 0.999 + . logic_name=eponine scaffold_97 . biological_region 88277 88283 0.999 - . logic_name=eponine scaffold_97 . biological_region 88317 88317 0.999 - . logic_name=eponine scaffold_97 . biological_region 91529 91530 0.999 + . logic_name=eponine scaffold_97 . biological_region 91612 91618 0.999 - . logic_name=eponine scaffold_97 . biological_region 91652 91652 0.999 - . logic_name=eponine scaffold_97 . biological_region 92192 92197 0.999 + . logic_name=eponine scaffold_97 . biological_region 92211 92214 0.999 + . logic_name=eponine scaffold_97 . biological_region 92269 92271 0.999 + . logic_name=eponine scaffold_97 . biological_region 92343 92345 0.999 + . logic_name=eponine scaffold_97 . biological_region 92405 92410 0.999 - . logic_name=eponine scaffold_97 . biological_region 92437 92440 0.999 - . logic_name=eponine scaffold_97 . biological_region 93724 93725 0.999 - . logic_name=eponine scaffold_97 . biological_region 94690 94692 0.999 - . logic_name=eponine scaffold_97 . biological_region 94984 94985 0.999 + . logic_name=eponine scaffold_97 . biological_region 94998 95002 0.999 + . logic_name=eponine scaffold_97 . biological_region 95009 95012 0.999 - . logic_name=eponine scaffold_97 . exon 86177 86870 . - . ID=Phyra72161.1;Parent=Phyra72161;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 ensembl protein_coding_gene 87186 88594 . - . ID=Phyra83826;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000025;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 87186 88594 . - . ID=Phyra83826;Parent=Phyra83826;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 87186 88594 . - 0 ID=Phyra83826;Parent=Phyra83826;rank=1 scaffold_97 . exon 87186 88594 . - . ID=Phyra83826.1;Parent=Phyra83826;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 ensembl protein_coding_gene 88886 92433 . - . ID=Phyra83827;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000026;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 88886 92433 . - . ID=Phyra83827;Parent=Phyra83827;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 88886 89167 . - 0 ID=Phyra83827;Parent=Phyra83827;rank=4 scaffold_97 . exon 88886 89167 . - . ID=Phyra83827.4;Parent=Phyra83827;constitutive=1;rank=4 scaffold_97 . CDS 89228 89375 . - 0 ID=Phyra83827;Parent=Phyra83827;rank=3 scaffold_97 . exon 89228 89375 . - . ID=Phyra83827.3;Parent=Phyra83827;constitutive=1;ensembl_phase=2;rank=3 scaffold_97 . CDS 89459 89718 . - 0 ID=Phyra83827;Parent=Phyra83827;rank=2 scaffold_97 . exon 89459 89718 . - . ID=Phyra83827.2;Parent=Phyra83827;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_97 . CDS 89899 92433 . - 0 ID=Phyra83827;Parent=Phyra83827;rank=1 scaffold_97 . exon 89899 92433 . - . ID=Phyra83827.1;Parent=Phyra83827;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 94833 97388 . + . ID=Phyra83828;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000027;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 94833 97388 . + . ID=Phyra83828;Parent=Phyra83828;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 94833 95186 . + 0 ID=Phyra83828;Parent=Phyra83828;rank=1 scaffold_97 . exon 94833 95186 . + . ID=Phyra83828.1;Parent=Phyra83828;constitutive=1;rank=1 scaffold_97 . CDS 95268 95419 . + 0 ID=Phyra83828;Parent=Phyra83828;rank=2 scaffold_97 . exon 95268 95419 . + . ID=Phyra83828.2;Parent=Phyra83828;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_97 . CDS 95975 97388 . + 0 ID=Phyra83828;Parent=Phyra83828;rank=3 scaffold_97 . repeat_region 95447 95917 . ? . description=dust scaffold_97 . repeat_region 100775 100807 . ? . description=trf scaffold_97 . repeat_region 101612 101620 . ? . description=dust scaffold_97 . exon 95975 97388 . + . ID=Phyra83828.3;Parent=Phyra83828;constitutive=1;ensembl_phase=2;rank=3 scaffold_97 ensembl protein_coding_gene 97549 98298 . - . ID=Phyra83829;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000028;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 97549 98298 . - . ID=Phyra83829;Parent=Phyra83829;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 97549 98298 . - 0 ID=Phyra83829;Parent=Phyra83829;rank=1 scaffold_97 . exon 97549 98298 . - . ID=Phyra83829.1;Parent=Phyra83829;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 98957 101061 . + . ID=Phyra83830;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000029;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 98957 101061 . + . ID=Phyra83830;Parent=Phyra83830;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 98957 99418 . + 0 ID=Phyra83830;Parent=Phyra83830;rank=1 scaffold_97 . exon 98957 99418 . + . ID=Phyra83830.1;Parent=Phyra83830;constitutive=1;rank=1 scaffold_97 . CDS 99490 100230 . + 0 ID=Phyra83830;Parent=Phyra83830;rank=2 scaffold_97 . exon 99490 100230 . + . ID=Phyra83830.2;Parent=Phyra83830;constitutive=1;rank=2 scaffold_97 . CDS 100316 100759 . + 0 ID=Phyra83830;Parent=Phyra83830;rank=3 scaffold_97 . exon 100316 100759 . + . ID=Phyra83830.3;Parent=Phyra83830;constitutive=1;rank=3 scaffold_97 . CDS 100866 101008 . + 0 ID=Phyra83830;Parent=Phyra83830;rank=4 scaffold_97 . exon 100866 101008 . + . ID=Phyra83830.4;Parent=Phyra83830;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_97 . CDS 101046 101061 . + 0 ID=Phyra83830;Parent=Phyra83830;rank=5 scaffold_97 . exon 101046 101061 . + . ID=Phyra83830.5;Parent=Phyra83830;constitutive=1;ensembl_phase=2;rank=5 scaffold_97 ensembl protein_coding_gene 101660 103108 . - . ID=Phyra83831;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000030;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 101660 103108 . - . ID=Phyra83831;Parent=Phyra83831;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 101660 103108 . - 0 ID=Phyra83831;Parent=Phyra83831;rank=1 scaffold_97 . exon 101660 103108 . - . ID=Phyra83831.1;Parent=Phyra83831;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 103280 105881 . + . ID=Phyra83832;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000031;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 103280 105881 . + . ID=Phyra83832;Parent=Phyra83832;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 103280 103778 . + 0 ID=Phyra83832;Parent=Phyra83832;rank=1 scaffold_97 . exon 103280 103778 . + . ID=Phyra83832.1;Parent=Phyra83832;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 . CDS 103861 105881 . + 0 ID=Phyra83832;Parent=Phyra83832;rank=2 scaffold_97 . exon 103861 105881 . + . ID=Phyra83832.2;Parent=Phyra83832;constitutive=1;ensembl_phase=1;rank=2 scaffold_97 . biological_region 108927 108932 0.999 - . logic_name=eponine scaffold_97 . biological_region 108981 108986 0.999 + . logic_name=eponine scaffold_97 . biological_region 113100 113109 0.999 + . logic_name=eponine scaffold_97 . biological_region 113158 113160 0.999 - . logic_name=eponine scaffold_97 . biological_region 113225 113226 0.999 - . logic_name=eponine scaffold_97 . biological_region 113383 113387 0.999 + . logic_name=eponine scaffold_97 . biological_region 113591 113598 0.999 + . logic_name=eponine scaffold_97 ensembl protein_coding_gene 107615 108719 . - . ID=Phyra83833;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000032;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 107615 108719 . - . ID=Phyra83833;Parent=Phyra83833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 107615 107772 . - 0 ID=Phyra83833;Parent=Phyra83833;rank=3 scaffold_97 . exon 107615 107772 . - . ID=Phyra83833.3;Parent=Phyra83833;constitutive=1;ensembl_phase=1;rank=3 scaffold_97 . CDS 107845 108000 . - 0 ID=Phyra83833;Parent=Phyra83833;rank=2 scaffold_97 . exon 107845 108000 . - . ID=Phyra83833.2;Parent=Phyra83833;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_97 . CDS 108077 108719 . - 0 ID=Phyra83833;Parent=Phyra83833;rank=1 scaffold_97 . exon 108077 108719 . - . ID=Phyra83833.1;Parent=Phyra83833;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 ensembl protein_coding_gene 108841 109271 . + . ID=Phyra83834;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000033;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 108841 109271 . + . ID=Phyra83834;Parent=Phyra83834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 108841 108981 . + 0 ID=Phyra83834;Parent=Phyra83834;rank=1 scaffold_97 . exon 108841 108981 . + . ID=Phyra83834.1;Parent=Phyra83834;constitutive=1;rank=1 scaffold_97 . CDS 109053 109271 . + 0 ID=Phyra83834;Parent=Phyra83834;rank=2 scaffold_97 . exon 109053 109271 . + . ID=Phyra83834.2;Parent=Phyra83834;constitutive=1;rank=2 scaffold_97 ensembl protein_coding_gene 109546 112455 . - . ID=Phyra83835;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000034;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 109546 112455 . - . ID=Phyra83835;Parent=Phyra83835;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 109546 109725 . - 0 ID=Phyra83835;Parent=Phyra83835;rank=5 scaffold_97 . exon 109546 109725 . - . ID=Phyra83835.5;Parent=Phyra83835;constitutive=1;rank=5 scaffold_97 . CDS 109819 109941 . - 0 ID=Phyra83835;Parent=Phyra83835;rank=4 scaffold_97 . exon 109819 109941 . - . ID=Phyra83835.4;Parent=Phyra83835;constitutive=1;rank=4 scaffold_97 . CDS 110037 111978 . - 0 ID=Phyra83835;Parent=Phyra83835;rank=3 scaffold_97 . exon 110037 111978 . - . ID=Phyra83835.3;Parent=Phyra83835;constitutive=1;ensembl_phase=2;rank=3 scaffold_97 . CDS 112056 112179 . - 0 ID=Phyra83835;Parent=Phyra83835;rank=2 scaffold_97 . exon 112056 112179 . - . ID=Phyra83835.2;Parent=Phyra83835;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_97 . CDS 112254 112455 . - 0 ID=Phyra83835;Parent=Phyra83835;rank=1 scaffold_97 . exon 112254 112455 . - . ID=Phyra83835.1;Parent=Phyra83835;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 ensembl protein_coding_gene 112799 113308 . - . ID=Phyra83836;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000035;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 112799 113308 . - . ID=Phyra83836;Parent=Phyra83836;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 112799 113308 . - 0 ID=Phyra83836;Parent=Phyra83836;rank=1 scaffold_97 . exon 112799 113308 . - . ID=Phyra83836.1;Parent=Phyra83836;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 106097 107006 . + . ID=Phyra96684;biotype=protein_coding;external_name=C_scaffold_97000005;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 106097 107006 . + . ID=Phyra96684;Parent=Phyra96684;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 106097 106467 . + 0 ID=Phyra96684;Parent=Phyra96684;rank=1 scaffold_97 . exon 106097 106467 . + . ID=Phyra96684.1;Parent=Phyra96684;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 . CDS 106528 106795 . + 0 ID=Phyra96684;Parent=Phyra96684;rank=2 scaffold_97 . exon 106528 106795 . + . ID=Phyra96684.2;Parent=Phyra96684;constitutive=1;ensembl_phase=2;rank=2 scaffold_97 . CDS 106986 107006 . + 0 ID=Phyra96684;Parent=Phyra96684;rank=3 scaffold_97 . exon 106986 107006 . + . ID=Phyra96684.3;Parent=Phyra96684;constitutive=1;rank=3 scaffold_97 . repeat_region 119502 119629 . - . description=GypsyPi-1c_LTR scaffold_97 . repeat_region 122176 122184 . ? . description=dust scaffold_97 . repeat_region 123788 123827 . ? . description=trf scaffold_97 ensembl snRNA_gene 119059 119174 . - . ID=EPrPRAG00000000030;biotype=snRNA;description=U5 spliceosomal RNA [Source:RFAM%3BAcc:RF00020];external_name=U5;logic_name=ncrna_eg scaffold_97 ensembl snRNA 119059 119174 . - . ID=EPrPRAT00000000030;Parent=EPrPRAG00000000030;biotype=snRNA;logic_name=ncrna_eg scaffold_97 . exon 119059 119174 . - . ID=EPrPRAE00000000030;Parent=EPrPRAT00000000030;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 ensembl protein_coding_gene 115000 118419 . - . ID=Phyra83837;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000036;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 115000 118419 . - . ID=Phyra83837;Parent=Phyra83837;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 115000 118419 . - 0 ID=Phyra83837;Parent=Phyra83837;rank=1 scaffold_97 . exon 115000 118419 . - . ID=Phyra83837.1;Parent=Phyra83837;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 120605 121447 . - . ID=Phyra83838;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_97000037;logic_name=jgi_phyra1 scaffold_97 ensembl transcript 120605 121447 . - . ID=Phyra83838;Parent=Phyra83838;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_97 . CDS 120605 121447 . - 0 ID=Phyra83838;Parent=Phyra83838;rank=1 scaffold_97 . exon 120605 121447 . - . ID=Phyra83838.1;Parent=Phyra83838;constitutive=1;rank=1 scaffold_97 ensembl snRNA_gene 126149 126264 . - . ID=EPrPRAG00000000100;biotype=snRNA;description=U5 spliceosomal RNA [Source:RFAM%3BAcc:RF00020];external_name=U5;logic_name=ncrna_eg scaffold_97 ensembl snRNA 126149 126264 . - . ID=EPrPRAT00000000100;Parent=EPrPRAG00000000100;biotype=snRNA;logic_name=ncrna_eg scaffold_97 . exon 126149 126264 . - . ID=EPrPRAE00000000100;Parent=EPrPRAT00000000100;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 . repeat_region 127094 151318 . ? . description=dust scaffold_97 . biological_region 151805 151807 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_105 1 157074 scaffold_105 . repeat_region 1714 33397 . ? . description=dust scaffold_105 ensembl protein_coding_gene 14 574 . - . ID=Phyra84160;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000001;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 14 574 . - . ID=Phyra84160;Parent=Phyra84160;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 14 343 . - 0 ID=Phyra84160;Parent=Phyra84160;rank=2 scaffold_105 . exon 14 343 . - . ID=Phyra84160.2;Parent=Phyra84160;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_105 . CDS 412 574 . - 0 ID=Phyra84160;Parent=Phyra84160;rank=1 scaffold_105 . exon 412 574 . - . ID=Phyra84160.1;Parent=Phyra84160;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_105 ensembl protein_coding_gene 1126 1503 . - . ID=Phyra84161;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000002;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 1126 1503 . - . ID=Phyra84161;Parent=Phyra84161;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 1126 1503 . - 0 ID=Phyra84161;Parent=Phyra84161;rank=1 scaffold_105 . exon 1126 1503 . - . ID=Phyra84161.1;Parent=Phyra84161;constitutive=1;rank=1 scaffold_105 . repeat_region 1714 33397 . ? . description=dust scaffold_105 . repeat_region 33659 33685 . ? . description=trf scaffold_105 . repeat_region 34261 34298 . ? . description=trf scaffold_105 . biological_region 36875 36880 0.999 + . logic_name=eponine scaffold_105 . biological_region 37700 37703 0.999 + . logic_name=eponine scaffold_105 . biological_region 37802 37805 0.999 - . logic_name=eponine scaffold_105 . repeat_region 38809 38835 . ? . description=trf scaffold_105 ensembl protein_coding_gene 33542 34171 . + . ID=Phyra84162;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000003;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 33542 34171 . + . ID=Phyra84162;Parent=Phyra84162;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 33542 34171 . + 0 ID=Phyra84162;Parent=Phyra84162;rank=1 scaffold_105 . exon 33542 34171 . + . ID=Phyra84162.1;Parent=Phyra84162;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 35272 39397 . + . ID=Phyra84163;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000004;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 35272 39397 . + . ID=Phyra84163;Parent=Phyra84163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 35272 39108 . + 0 ID=Phyra84163;Parent=Phyra84163;rank=1 scaffold_105 . exon 35272 39108 . + . ID=Phyra84163.1;Parent=Phyra84163;constitutive=1;rank=1 scaffold_105 . CDS 39281 39397 . + 0 ID=Phyra84163;Parent=Phyra84163;rank=2 scaffold_105 . repeat_region 44460 45878 . ? . description=dust scaffold_105 . repeat_region 47384 47433 . ? . description=dust scaffold_105 . repeat_region 49074 50331 . ? . description=dust scaffold_105 ensembl pseudogene 43492 43742 . - . ID=Phyra39320;biotype=pseudogene;external_name=gwEuk.105.7.1;logic_name=jgi_phyra1 scaffold_105 ensembl pseudogene 43492 43742 . - . ID=Phyra39320;Parent=Phyra39320;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_105 . exon 43492 43742 . - . ID=Phyra39320.1;Parent=Phyra39320;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_105 . exon 39281 39397 . + . ID=Phyra84163.2;Parent=Phyra84163;constitutive=1;rank=2 scaffold_105 ensembl protein_coding_gene 50398 53626 . + . ID=Phyra84164;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000005;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 50398 53626 . + . ID=Phyra84164;Parent=Phyra84164;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 50398 51008 . + 0 ID=Phyra84164;Parent=Phyra84164;rank=1 scaffold_105 . exon 50398 51008 . + . ID=Phyra84164.1;Parent=Phyra84164;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_105 . CDS 51067 51071 . + 0 ID=Phyra84164;Parent=Phyra84164;rank=2 scaffold_105 . exon 51067 51071 . + . ID=Phyra84164.2;Parent=Phyra84164;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_105 . CDS 52456 52809 . + 0 ID=Phyra84164;Parent=Phyra84164;rank=3 scaffold_105 . exon 52456 52809 . + . ID=Phyra84164.3;Parent=Phyra84164;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_105 . CDS 52872 53626 . + 0 ID=Phyra84164;Parent=Phyra84164;rank=4 scaffold_105 . exon 52872 53626 . + . ID=Phyra84164.4;Parent=Phyra84164;constitutive=1;ensembl_phase=1;rank=4 scaffold_105 . repeat_region 57375 59861 . ? . description=dust scaffold_105 . repeat_region 61277 61326 . ? . description=dust scaffold_105 . repeat_region 63140 63151 . ? . description=dust scaffold_105 . biological_region 67341 67343 0.999 - . logic_name=eponine scaffold_105 . biological_region 68062 68063 0.999 - . logic_name=eponine scaffold_105 . biological_region 68105 68107 0.999 - . logic_name=eponine scaffold_105 . biological_region 68184 68184 0.999 - . logic_name=eponine scaffold_105 . biological_region 68261 68263 0.999 + . logic_name=eponine scaffold_105 . biological_region 68292 68293 0.999 - . logic_name=eponine scaffold_105 . biological_region 68683 68683 0.999 - . logic_name=eponine scaffold_105 ensembl protein_coding_gene 62178 62528 . - . ID=Phyra84165;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000006;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 62178 62528 . - . ID=Phyra84165;Parent=Phyra84165;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 62178 62528 . - 0 ID=Phyra84165;Parent=Phyra84165;rank=1 scaffold_105 . exon 62178 62528 . - . ID=Phyra84165.1;Parent=Phyra84165;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 63876 67937 . - . ID=Phyra84166;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000007;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 63876 67937 . - . ID=Phyra84166;Parent=Phyra84166;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 63876 67937 . - 0 ID=Phyra84166;Parent=Phyra84166;rank=1 scaffold_105 . exon 63876 67937 . - . ID=Phyra84166.1;Parent=Phyra84166;constitutive=1;rank=1 scaffold_105 . repeat_region 68864 68885 . ? . description=trf scaffold_105 ensembl protein_coding_gene 70013 75111 . + . ID=Phyra84167;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000008;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 70013 75111 . + . ID=Phyra84167;Parent=Phyra84167;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 70013 74055 . + 0 ID=Phyra84167;Parent=Phyra84167;rank=1 scaffold_105 . exon 70013 74055 . + . ID=Phyra84167.1;Parent=Phyra84167;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_105 . CDS 74208 75111 . + 0 ID=Phyra84167;Parent=Phyra84167;rank=2 scaffold_105 . exon 74208 75111 . + . ID=Phyra84167.2;Parent=Phyra84167;constitutive=1;ensembl_phase=2;rank=2 scaffold_105 ensembl protein_coding_gene 76194 77243 . - . ID=Phyra84168;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000009;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 76194 77243 . - . ID=Phyra84168;Parent=Phyra84168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 76194 77243 . - 0 ID=Phyra84168;Parent=Phyra84168;rank=1 scaffold_105 . exon 76194 77243 . - . ID=Phyra84168.1;Parent=Phyra84168;constitutive=1;rank=1 scaffold_105 . biological_region 81475 81478 0.999 + . logic_name=eponine scaffold_105 . biological_region 87841 87843 0.999 + . logic_name=eponine scaffold_105 . biological_region 87962 87966 0.999 - . logic_name=eponine scaffold_105 . biological_region 87994 87995 0.999 - . logic_name=eponine scaffold_105 . biological_region 88041 88043 0.999 - . logic_name=eponine scaffold_105 ensembl protein_coding_gene 86361 88094 . + . ID=Phyra39341;biotype=protein_coding;external_name=gwEuk.105.28.1;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 86361 88094 . + . ID=Phyra39341;Parent=Phyra39341;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 86361 88094 . + 0 ID=Phyra39341;Parent=Phyra39341;rank=1 scaffold_105 . exon 86361 88094 . + . ID=Phyra39341.1;Parent=Phyra39341;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 78726 82790 . + . ID=Phyra84169;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000010;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 78726 82790 . + . ID=Phyra84169;Parent=Phyra84169;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 78726 82790 . + 0 ID=Phyra84169;Parent=Phyra84169;rank=1 scaffold_105 . exon 78726 82790 . + . ID=Phyra84169.1;Parent=Phyra84169;constitutive=1;rank=1 scaffold_105 . repeat_region 88851 88875 . ? . description=trf scaffold_105 . repeat_region 92660 92728 . ? . description=trf scaffold_105 ensembl protein_coding_gene 89396 90310 . - . ID=Phyra84171;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000012;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 89396 90310 . - . ID=Phyra84171;Parent=Phyra84171;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 89396 90310 . - 0 ID=Phyra84171;Parent=Phyra84171;rank=1 scaffold_105 . exon 89396 90310 . - . ID=Phyra84171.1;Parent=Phyra84171;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 92288 96013 . + . ID=Phyra84172;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000013;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 92288 96013 . + . ID=Phyra84172;Parent=Phyra84172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 92288 94971 . + 0 ID=Phyra84172;Parent=Phyra84172;rank=1 scaffold_105 . exon 92288 94971 . + . ID=Phyra84172.1;Parent=Phyra84172;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_105 . CDS 95177 95608 . + 0 ID=Phyra84172;Parent=Phyra84172;rank=2 scaffold_105 . exon 95177 95608 . + . ID=Phyra84172.2;Parent=Phyra84172;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_105 . CDS 95681 95891 . + 0 ID=Phyra84172;Parent=Phyra84172;rank=3 scaffold_105 . exon 95681 95891 . + . ID=Phyra84172.3;Parent=Phyra84172;constitutive=1;ensembl_phase=2;rank=3 scaffold_105 . CDS 95969 96013 . + 0 ID=Phyra84172;Parent=Phyra84172;rank=4 scaffold_105 . exon 95969 96013 . + . ID=Phyra84172.4;Parent=Phyra84172;constitutive=1;rank=4 scaffold_105 ensembl protein_coding_gene 96237 100301 . - . ID=Phyra84173;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000014;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 96237 100301 . - . ID=Phyra84173;Parent=Phyra84173;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 96237 100301 . - 0 ID=Phyra84173;Parent=Phyra84173;rank=1 scaffold_105 . exon 96237 100301 . - . ID=Phyra84173.1;Parent=Phyra84173;constitutive=1;rank=1 scaffold_105 . biological_region 106910 106916 0.999 + . logic_name=eponine scaffold_105 ensembl protein_coding_gene 100624 101757 . + . ID=Phyra84174;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000015;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 100624 101757 . + . ID=Phyra84174;Parent=Phyra84174;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 100624 101757 . + 0 ID=Phyra84174;Parent=Phyra84174;rank=1 scaffold_105 . exon 100624 101757 . + . ID=Phyra84174.1;Parent=Phyra84174;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 102163 103041 . + . ID=Phyra84175;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000016;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 102163 103041 . + . ID=Phyra84175;Parent=Phyra84175;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 102163 103041 . + 0 ID=Phyra84175;Parent=Phyra84175;rank=1 scaffold_105 . exon 102163 103041 . + . ID=Phyra84175.1;Parent=Phyra84175;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 103606 105396 . + . ID=Phyra84176;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000017;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 103606 105396 . + . ID=Phyra84176;Parent=Phyra84176;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 103606 104467 . + 0 ID=Phyra84176;Parent=Phyra84176;rank=1 scaffold_105 . exon 103606 104467 . + . ID=Phyra84176.1;Parent=Phyra84176;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_105 . CDS 104534 105396 . + 0 ID=Phyra84176;Parent=Phyra84176;rank=2 scaffold_105 . exon 104534 105396 . + . ID=Phyra84176.2;Parent=Phyra84176;constitutive=1;ensembl_phase=1;rank=2 scaffold_105 ensembl protein_coding_gene 105500 107095 . - . ID=Phyra84177;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000018;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 105500 107095 . - . ID=Phyra84177;Parent=Phyra84177;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 105500 107095 . - 0 ID=Phyra84177;Parent=Phyra84177;rank=1 scaffold_105 . exon 105500 107095 . - . ID=Phyra84177.1;Parent=Phyra84177;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 107801 109390 . + . ID=Phyra84178;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000019;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 107801 109390 . + . ID=Phyra84178;Parent=Phyra84178;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 107801 109390 . + 0 ID=Phyra84178;Parent=Phyra84178;rank=1 scaffold_105 . exon 107801 109390 . + . ID=Phyra84178.1;Parent=Phyra84178;constitutive=1;rank=1 scaffold_105 . repeat_region 114289 114313 . ? . description=trf scaffold_105 ensembl protein_coding_gene 109978 112335 . + . ID=Phyra84179;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000020;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 109978 112335 . + . ID=Phyra84179;Parent=Phyra84179;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 109978 112335 . + 0 ID=Phyra84179;Parent=Phyra84179;rank=1 scaffold_105 . exon 109978 112335 . + . ID=Phyra84179.1;Parent=Phyra84179;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 112679 113836 . - . ID=Phyra84180;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000021;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 112679 113836 . - . ID=Phyra84180;Parent=Phyra84180;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 112679 113025 . - 0 ID=Phyra84180;Parent=Phyra84180;rank=3 scaffold_105 . exon 112679 113025 . - . ID=Phyra84180.3;Parent=Phyra84180;constitutive=1;ensembl_phase=1;rank=3 scaffold_105 . CDS 113050 113689 . - 0 ID=Phyra84180;Parent=Phyra84180;rank=2 scaffold_105 . exon 113050 113689 . - . ID=Phyra84180.2;Parent=Phyra84180;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_105 . CDS 113810 113836 . - 0 ID=Phyra84180;Parent=Phyra84180;rank=1 scaffold_105 . exon 113810 113836 . - . ID=Phyra84180.1;Parent=Phyra84180;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 114050 114523 . - . ID=Phyra84181;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000022;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 114050 114523 . - . ID=Phyra84181;Parent=Phyra84181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 114050 114523 . - 0 ID=Phyra84181;Parent=Phyra84181;rank=1 scaffold_105 . exon 114050 114523 . - . ID=Phyra84181.1;Parent=Phyra84181;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 115791 117830 . + . ID=Phyra84182;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000023;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 115791 117830 . + . ID=Phyra84182;Parent=Phyra84182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 115791 115848 . + 0 ID=Phyra84182;Parent=Phyra84182;rank=1 scaffold_105 . exon 115791 115848 . + . ID=Phyra84182.1;Parent=Phyra84182;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_105 . CDS 116078 116608 . + 0 ID=Phyra84182;Parent=Phyra84182;rank=2 scaffold_105 . exon 116078 116608 . + . ID=Phyra84182.2;Parent=Phyra84182;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_105 . CDS 116669 116845 . + 0 ID=Phyra84182;Parent=Phyra84182;rank=3 scaffold_105 . exon 116669 116845 . + . ID=Phyra84182.3;Parent=Phyra84182;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_105 . CDS 116908 117830 . + 0 ID=Phyra84182;Parent=Phyra84182;rank=4 scaffold_105 . exon 116908 117830 . + . ID=Phyra84182.4;Parent=Phyra84182;constitutive=1;ensembl_phase=1;rank=4 scaffold_105 . biological_region 119153 119155 0.999 - . logic_name=eponine scaffold_105 . biological_region 121679 121682 0.999 - . logic_name=eponine scaffold_105 . biological_region 122391 122393 0.999 + . logic_name=eponine scaffold_105 . repeat_region 124732 125713 . ? . description=dust scaffold_105 . repeat_region 126765 138591 . ? . description=dust scaffold_105 ensembl protein_coding_gene 118009 119337 . + . ID=Phyra84183;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000024;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 118009 119337 . + . ID=Phyra84183;Parent=Phyra84183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 118009 118081 . + 0 ID=Phyra84183;Parent=Phyra84183;rank=1 scaffold_105 . exon 118009 118081 . + . ID=Phyra84183.1;Parent=Phyra84183;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_105 . CDS 118138 118244 . + 0 ID=Phyra84183;Parent=Phyra84183;rank=2 scaffold_105 . exon 118138 118244 . + . ID=Phyra84183.2;Parent=Phyra84183;constitutive=1;ensembl_phase=1;rank=2 scaffold_105 . CDS 118348 118588 . + 0 ID=Phyra84183;Parent=Phyra84183;rank=3 scaffold_105 . exon 118348 118588 . + . ID=Phyra84183.3;Parent=Phyra84183;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_105 . CDS 118646 119337 . + 0 ID=Phyra84183;Parent=Phyra84183;rank=4 scaffold_105 . exon 118646 119337 . + . ID=Phyra84183.4;Parent=Phyra84183;constitutive=1;ensembl_phase=1;rank=4 scaffold_105 ensembl protein_coding_gene 120078 122759 . + . ID=Phyra84184;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000025;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 120078 122759 . + . ID=Phyra84184;Parent=Phyra84184;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 120078 122759 . + 0 ID=Phyra84184;Parent=Phyra84184;rank=1 scaffold_105 . exon 120078 122759 . + . ID=Phyra84184.1;Parent=Phyra84184;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 125785 126665 . - . ID=Phyra84185;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_105000026;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 125785 126665 . - . ID=Phyra84185;Parent=Phyra84185;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 125785 125804 . - 0 ID=Phyra84185;Parent=Phyra84185;rank=2 scaffold_105 . exon 125785 125804 . - . ID=Phyra84185.2;Parent=Phyra84185;constitutive=1;ensembl_phase=1;rank=2 scaffold_105 . CDS 125894 126665 . - 0 ID=Phyra84185;Parent=Phyra84185;rank=1 scaffold_105 . exon 125894 126665 . - . ID=Phyra84185.1;Parent=Phyra84185;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_105 . repeat_region 126765 138591 . ? . description=dust scaffold_105 . repeat_region 142185 154670 . ? . description=dust scaffold_105 ensembl protein_coding_gene 139638 141233 . + . ID=Phyra72198;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_105000001;logic_name=jgi_phyra1 scaffold_105 ensembl transcript 139638 141233 . + . ID=Phyra72198;Parent=Phyra72198;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_105 . CDS 139638 141233 . + 0 ID=Phyra72198;Parent=Phyra72198;rank=1 scaffold_105 . exon 139638 141233 . + . ID=Phyra72198.1;Parent=Phyra72198;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_104 1 157244 scaffold_104 . biological_region 157 160 0.999 + . logic_name=eponine scaffold_104 . biological_region 250 251 0.999 - . logic_name=eponine scaffold_104 . biological_region 342 344 0.999 + . logic_name=eponine scaffold_104 . repeat_region 1333 2147 . ? . description=dust scaffold_104 . repeat_region 2156 8145 . - . description=Polinton-1_PI scaffold_104 . repeat_region 3718 3725 . ? . description=dust scaffold_104 . repeat_region 8077 8086 . ? . description=dust scaffold_104 . repeat_region 9813 10180 . - . description=Polinton-1_PI scaffold_104 ensembl protein_coding_gene 101 819 . - . ID=Phyra84113;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000001;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 101 819 . - . ID=Phyra84113;Parent=Phyra84113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 101 819 . - 0 ID=Phyra84113;Parent=Phyra84113;rank=1 scaffold_104 . exon 101 819 . - . ID=Phyra84113.1;Parent=Phyra84113;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_104 ensembl protein_coding_gene 8193 9974 . - . ID=Phyra84114;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000002;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 8193 9974 . - . ID=Phyra84114;Parent=Phyra84114;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 8193 9974 . - 0 ID=Phyra84114;Parent=Phyra84114;rank=1 scaffold_104 . exon 8193 9974 . - . ID=Phyra84114.1;Parent=Phyra84114;constitutive=1;rank=1 scaffold_104 . repeat_region 18975 19017 . ? . description=trf scaffold_104 . repeat_region 18975 19017 . ? . description=trf scaffold_104 ensembl protein_coding_gene 14672 16342 . - . ID=Phyra72190;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_104000001;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 14672 16342 . - . ID=Phyra72190;Parent=Phyra72190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 14672 16342 . - 0 ID=Phyra72190;Parent=Phyra72190;rank=1 scaffold_104 . exon 14672 16342 . - . ID=Phyra72190.1;Parent=Phyra72190;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 16671 17236 . + . ID=Phyra84116;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000004;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 16671 17236 . + . ID=Phyra84116;Parent=Phyra84116;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 16671 16685 . + 0 ID=Phyra84116;Parent=Phyra84116;rank=1 scaffold_104 . exon 16671 16685 . + . ID=Phyra84116.1;Parent=Phyra84116;constitutive=1;rank=1 scaffold_104 . CDS 16844 16851 . + 0 ID=Phyra84116;Parent=Phyra84116;rank=2 scaffold_104 . exon 16844 16851 . + . ID=Phyra84116.2;Parent=Phyra84116;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_104 . CDS 16930 17236 . + 0 ID=Phyra84116;Parent=Phyra84116;rank=3 scaffold_104 . exon 16930 17236 . + . ID=Phyra84116.3;Parent=Phyra84116;constitutive=1;ensembl_phase=2;rank=3 scaffold_104 . repeat_region 23692 23714 . ? . description=dust scaffold_104 . biological_region 24255 24259 0.999 - . logic_name=eponine scaffold_104 ensembl protein_coding_gene 19728 21029 . - . ID=Phyra84117;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000005;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 19728 21029 . - . ID=Phyra84117;Parent=Phyra84117;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 19728 21029 . - 0 ID=Phyra84117;Parent=Phyra84117;rank=1 scaffold_104 . exon 19728 21029 . - . ID=Phyra84117.1;Parent=Phyra84117;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 24127 24849 . + . ID=Phyra84118;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000006;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 24127 24849 . + . ID=Phyra84118;Parent=Phyra84118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 24127 24849 . + 0 ID=Phyra84118;Parent=Phyra84118;rank=1 scaffold_104 . exon 24127 24849 . + . ID=Phyra84118.1;Parent=Phyra84118;constitutive=1;rank=1 scaffold_104 . repeat_region 39870 39919 . ? . description=dust scaffold_104 . repeat_region 42537 42553 . ? . description=dust scaffold_104 . biological_region 42613 42614 0.999 - . logic_name=eponine scaffold_104 . repeat_region 43706 43734 . ? . description=trf scaffold_104 . repeat_region 45020 45104 . ? . description=dust scaffold_104 . biological_region 45323 45323 0.999 + . logic_name=eponine scaffold_104 . repeat_region 45329 45384 . ? . description=trf scaffold_104 . repeat_region 47230 47238 . ? . description=dust scaffold_104 . repeat_region 47288 47309 . ? . description=trf scaffold_104 ensembl pseudogenic_tRNA 39544 39608 . + . ID=EPrPRAG00000000039;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_104 ensembl transcript 39544 39608 . + . ID=EPrPRAT00000000039;Parent=EPrPRAG00000000039;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_104 . exon 39544 39608 . + . ID=EPrPRAE00000000039;Parent=EPrPRAT00000000039;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_104 ensembl protein_coding_gene 44480 44998 . - . ID=Phyra84119;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000007;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 44480 44998 . - . ID=Phyra84119;Parent=Phyra84119;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 44480 44998 . - 0 ID=Phyra84119;Parent=Phyra84119;rank=1 scaffold_104 . exon 44480 44998 . - . ID=Phyra84119.1;Parent=Phyra84119;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 48154 49128 . + . ID=Phyra84120;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000008;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 48154 49128 . + . ID=Phyra84120;Parent=Phyra84120;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 48154 49128 . + 0 ID=Phyra84120;Parent=Phyra84120;rank=1 scaffold_104 . exon 48154 49128 . + . ID=Phyra84120.1;Parent=Phyra84120;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 58524 59823 . + . ID=Phyra72191;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_104000002;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 58524 59823 . + . ID=Phyra72191;Parent=Phyra72191;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 58524 58727 . + 0 ID=Phyra72191;Parent=Phyra72191;rank=1 scaffold_104 . exon 58524 58727 . + . ID=Phyra72191.1;Parent=Phyra72191;constitutive=1;rank=1 scaffold_104 . CDS 58789 58869 . + 0 ID=Phyra72191;Parent=Phyra72191;rank=2 scaffold_104 . exon 58789 58869 . + . ID=Phyra72191.2;Parent=Phyra72191;constitutive=1;rank=2 scaffold_104 . CDS 58945 59108 . + 0 ID=Phyra72191;Parent=Phyra72191;rank=3 scaffold_104 . exon 58945 59108 . + . ID=Phyra72191.3;Parent=Phyra72191;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_104 . CDS 59168 59304 . + 0 ID=Phyra72191;Parent=Phyra72191;rank=4 scaffold_104 . CDS 59374 59489 . + 0 ID=Phyra72191;Parent=Phyra72191;rank=5 scaffold_104 . CDS 59572 59772 . + 0 ID=Phyra72191;Parent=Phyra72191;rank=6 scaffold_104 . CDS 59797 59823 . + 0 ID=Phyra72191;Parent=Phyra72191;rank=7 scaffold_104 ensembl protein_coding_gene 49965 50944 . - . ID=Phyra84121;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000009;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 49965 50944 . - . ID=Phyra84121;Parent=Phyra84121;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 49965 50286 . - 0 ID=Phyra84121;Parent=Phyra84121;rank=2 scaffold_104 . exon 49965 50286 . - . ID=Phyra84121.2;Parent=Phyra84121;constitutive=1;ensembl_phase=2;rank=2 scaffold_104 . CDS 50418 50944 . - 0 ID=Phyra84121;Parent=Phyra84121;rank=1 scaffold_104 . exon 50418 50944 . - . ID=Phyra84121.1;Parent=Phyra84121;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_104 ensembl protein_coding_gene 51930 58211 . - . ID=Phyra84122;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000010;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 51930 58211 . - . ID=Phyra84122;Parent=Phyra84122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 51930 58211 . - 0 ID=Phyra84122;Parent=Phyra84122;rank=1 scaffold_104 . exon 51930 58211 . - . ID=Phyra84122.1;Parent=Phyra84122;constitutive=1;rank=1 scaffold_104 . repeat_region 61343 61351 . ? . description=dust scaffold_104 . biological_region 61992 61997 0.999 - . logic_name=eponine scaffold_104 . biological_region 62763 62766 0.999 + . logic_name=eponine scaffold_104 . biological_region 65469 65469 0.999 - . logic_name=eponine scaffold_104 . exon 59168 59304 . + . ID=Phyra72191.4;Parent=Phyra72191;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_104 . exon 59374 59489 . + . ID=Phyra72191.5;Parent=Phyra72191;constitutive=1;ensembl_phase=1;rank=5 scaffold_104 . exon 59572 59772 . + . ID=Phyra72191.6;Parent=Phyra72191;constitutive=1;rank=6 scaffold_104 . exon 59797 59823 . + . ID=Phyra72191.7;Parent=Phyra72191;constitutive=1;rank=7 scaffold_104 ensembl protein_coding_gene 64990 66021 . + . ID=Phyra72192;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_104000003;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 64990 66021 . + . ID=Phyra72192;Parent=Phyra72192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 64990 66021 . + 0 ID=Phyra72192;Parent=Phyra72192;rank=1 scaffold_104 . exon 64990 66021 . + . ID=Phyra72192.1;Parent=Phyra72192;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 59990 61044 . + . ID=Phyra84124;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000012;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 59990 61044 . + . ID=Phyra84124;Parent=Phyra84124;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 59990 60214 . + 0 ID=Phyra84124;Parent=Phyra84124;rank=1 scaffold_104 . exon 59990 60214 . + . ID=Phyra84124.1;Parent=Phyra84124;constitutive=1;rank=1 scaffold_104 . CDS 60296 60472 . + 0 ID=Phyra84124;Parent=Phyra84124;rank=2 scaffold_104 . exon 60296 60472 . + . ID=Phyra84124.2;Parent=Phyra84124;constitutive=1;rank=2 scaffold_104 . CDS 60570 60635 . + 0 ID=Phyra84124;Parent=Phyra84124;rank=3 scaffold_104 . exon 60570 60635 . + . ID=Phyra84124.3;Parent=Phyra84124;constitutive=1;rank=3 scaffold_104 . CDS 60729 60870 . + 0 ID=Phyra84124;Parent=Phyra84124;rank=4 scaffold_104 . exon 60729 60870 . + . ID=Phyra84124.4;Parent=Phyra84124;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_104 . CDS 60947 61044 . + 0 ID=Phyra84124;Parent=Phyra84124;rank=5 scaffold_104 . exon 60947 61044 . + . ID=Phyra84124.5;Parent=Phyra84124;constitutive=1;ensembl_phase=1;rank=5 scaffold_104 ensembl protein_coding_gene 61435 62916 . + . ID=Phyra84125;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000013;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 61435 62916 . + . ID=Phyra84125;Parent=Phyra84125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 61435 62916 . + 0 ID=Phyra84125;Parent=Phyra84125;rank=1 scaffold_104 . exon 61435 62916 . + . ID=Phyra84125.1;Parent=Phyra84125;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 67453 68016 . + . ID=Phyra84127;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000015;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 67453 68016 . + . ID=Phyra84127;Parent=Phyra84127;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 67453 68016 . + 0 ID=Phyra84127;Parent=Phyra84127;rank=1 scaffold_104 . exon 67453 68016 . + . ID=Phyra84127.1;Parent=Phyra84127;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 68496 69953 . + . ID=Phyra84128;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000016;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 68496 69953 . + . ID=Phyra84128;Parent=Phyra84128;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 68496 69953 . + 0 ID=Phyra84128;Parent=Phyra84128;rank=1 scaffold_104 . exon 68496 69953 . + . ID=Phyra84128.1;Parent=Phyra84128;constitutive=1;rank=1 scaffold_104 . repeat_region 72633 72655 . ? . description=trf scaffold_104 ensembl protein_coding_gene 74607 78790 . + . ID=Phyra84131;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000019;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 74607 78790 . + . ID=Phyra84131;Parent=Phyra84131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 74607 77968 . + 0 ID=Phyra84131;Parent=Phyra84131;rank=1 scaffold_104 . exon 74607 77968 . + . ID=Phyra84131.1;Parent=Phyra84131;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_104 . CDS 78036 78146 . + 0 ID=Phyra84131;Parent=Phyra84131;rank=2 scaffold_104 . exon 78036 78146 . + . ID=Phyra84131.2;Parent=Phyra84131;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_104 . CDS 78235 78790 . + 0 ID=Phyra84131;Parent=Phyra84131;rank=3 scaffold_104 . exon 78235 78790 . + . ID=Phyra84131.3;Parent=Phyra84131;constitutive=1;ensembl_phase=2;rank=3 scaffold_104 ensembl protein_coding_gene 70160 73681 . - . ID=Phyra96768;biotype=protein_coding;external_name=C_scaffold_104000005;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 70160 73681 . - . ID=Phyra96768;Parent=Phyra96768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 70160 70982 . - 0 ID=Phyra96768;Parent=Phyra96768;rank=4 scaffold_104 . exon 70160 70982 . - . ID=Phyra96768.4;Parent=Phyra96768;constitutive=1;ensembl_phase=2;rank=4 scaffold_104 . CDS 71055 71357 . - 0 ID=Phyra96768;Parent=Phyra96768;rank=3 scaffold_104 . exon 71055 71357 . - . ID=Phyra96768.3;Parent=Phyra96768;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_104 . CDS 71580 72014 . - 0 ID=Phyra96768;Parent=Phyra96768;rank=2 scaffold_104 . exon 71580 72014 . - . ID=Phyra96768.2;Parent=Phyra96768;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_104 . CDS 72579 73681 . - 0 ID=Phyra96768;Parent=Phyra96768;rank=1 scaffold_104 . exon 72579 73681 . - . ID=Phyra96768.1;Parent=Phyra96768;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_104 . biological_region 84590 84594 0.999 + . logic_name=eponine scaffold_104 . repeat_region 85178 85186 . ? . description=dust scaffold_104 ensembl protein_coding_gene 79085 80788 . - . ID=Phyra84132;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000020;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 79085 80788 . - . ID=Phyra84132;Parent=Phyra84132;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 79085 80788 . - 0 ID=Phyra84132;Parent=Phyra84132;rank=1 scaffold_104 . exon 79085 80788 . - . ID=Phyra84132.1;Parent=Phyra84132;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 85144 85778 . + . ID=Phyra84133;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000021;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 85144 85778 . + . ID=Phyra84133;Parent=Phyra84133;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 85144 85168 . + 0 ID=Phyra84133;Parent=Phyra84133;rank=1 scaffold_104 . exon 85144 85168 . + . ID=Phyra84133.1;Parent=Phyra84133;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_104 . CDS 85261 85778 . + 0 ID=Phyra84133;Parent=Phyra84133;rank=2 scaffold_104 . exon 85261 85778 . + . ID=Phyra84133.2;Parent=Phyra84133;constitutive=1;ensembl_phase=1;rank=2 scaffold_104 ensembl protein_coding_gene 86268 90299 . - . ID=Phyra84134;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000022;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 86268 90299 . - . ID=Phyra84134;Parent=Phyra84134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 86268 90299 . - 0 ID=Phyra84134;Parent=Phyra84134;rank=1 scaffold_104 . exon 86268 90299 . - . ID=Phyra84134.1;Parent=Phyra84134;constitutive=1;rank=1 scaffold_104 . repeat_region 90507 90532 . ? . description=trf scaffold_104 ensembl protein_coding_gene 90742 92613 . - . ID=Phyra84135;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000023;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 90742 92613 . - . ID=Phyra84135;Parent=Phyra84135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 90742 90810 . - 0 ID=Phyra84135;Parent=Phyra84135;rank=5 scaffold_104 . exon 90742 90810 . - . ID=Phyra84135.5;Parent=Phyra84135;constitutive=1;rank=5 scaffold_104 . CDS 90886 90969 . - 0 ID=Phyra84135;Parent=Phyra84135;rank=4 scaffold_104 . exon 90886 90969 . - . ID=Phyra84135.4;Parent=Phyra84135;constitutive=1;rank=4 scaffold_104 . CDS 91030 91169 . - 0 ID=Phyra84135;Parent=Phyra84135;rank=3 scaffold_104 . exon 91030 91169 . - . ID=Phyra84135.3;Parent=Phyra84135;constitutive=1;ensembl_phase=1;rank=3 scaffold_104 . CDS 91598 91610 . - 0 ID=Phyra84135;Parent=Phyra84135;rank=2 scaffold_104 . exon 91598 91610 . - . ID=Phyra84135.2;Parent=Phyra84135;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_104 . CDS 91726 92613 . - 0 ID=Phyra84135;Parent=Phyra84135;rank=1 scaffold_104 . exon 91726 92613 . - . ID=Phyra84135.1;Parent=Phyra84135;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 97729 99711 . - . ID=Phyra84137;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000025;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 97729 99711 . - . ID=Phyra84137;Parent=Phyra84137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 97729 99711 . - 0 ID=Phyra84137;Parent=Phyra84137;rank=1 scaffold_104 . exon 97729 99711 . - . ID=Phyra84137.1;Parent=Phyra84137;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 95490 96672 . - . ID=Phyra96770;biotype=protein_coding;external_name=C_scaffold_104000007;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 95490 96672 . - . ID=Phyra96770;Parent=Phyra96770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 95490 95507 . - 0 ID=Phyra96770;Parent=Phyra96770;rank=2 scaffold_104 . exon 95490 95507 . - . ID=Phyra96770.2;Parent=Phyra96770;constitutive=1;rank=2 scaffold_104 . CDS 95662 96672 . - 0 ID=Phyra96770;Parent=Phyra96770;rank=1 scaffold_104 . exon 95662 96672 . - . ID=Phyra96770.1;Parent=Phyra96770;constitutive=1;rank=1 scaffold_104 . biological_region 99764 99764 0.999 - . logic_name=eponine scaffold_104 . biological_region 100642 100645 0.999 - . logic_name=eponine scaffold_104 . biological_region 100697 100701 0.999 + . logic_name=eponine scaffold_104 . biological_region 102097 102100 0.999 - . logic_name=eponine scaffold_104 . biological_region 102233 102237 0.999 - . logic_name=eponine scaffold_104 . biological_region 105730 105732 0.999 + . logic_name=eponine scaffold_104 . biological_region 105872 105875 0.999 + . logic_name=eponine scaffold_104 . biological_region 106680 106683 0.999 - . logic_name=eponine scaffold_104 ensembl protein_coding_gene 100687 102669 . - . ID=Phyra72194;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_104000005;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 100687 102669 . - . ID=Phyra72194;Parent=Phyra72194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 100687 102591 . - 0 ID=Phyra72194;Parent=Phyra72194;rank=2 scaffold_104 . exon 100687 102591 . - . ID=Phyra72194.2;Parent=Phyra72194;constitutive=1;rank=2 scaffold_104 . CDS 102646 102669 . - 0 ID=Phyra72194;Parent=Phyra72194;rank=1 scaffold_104 . exon 102646 102669 . - . ID=Phyra72194.1;Parent=Phyra72194;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 104149 106050 . + . ID=Phyra72195;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_104000006;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 104149 106050 . + . ID=Phyra72195;Parent=Phyra72195;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 104149 106050 . + 0 ID=Phyra72195;Parent=Phyra72195;rank=1 scaffold_104 . exon 104149 106050 . + . ID=Phyra72195.1;Parent=Phyra72195;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 106593 107735 . + . ID=Phyra84140;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000028;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 106593 107735 . + . ID=Phyra84140;Parent=Phyra84140;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 106593 107735 . + 0 ID=Phyra84140;Parent=Phyra84140;rank=1 scaffold_104 . exon 106593 107735 . + . ID=Phyra84140.1;Parent=Phyra84140;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 107909 114564 . - . ID=Phyra96772;biotype=protein_coding;external_name=C_scaffold_104000009;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 107909 114564 . - . ID=Phyra96772;Parent=Phyra96772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 107909 108169 . - 0 ID=Phyra96772;Parent=Phyra96772;rank=10 scaffold_104 . exon 107909 108169 . - . ID=Phyra96772.10;Parent=Phyra96772;constitutive=1;rank=10 scaffold_104 . CDS 108233 108819 . - 0 ID=Phyra96772;Parent=Phyra96772;rank=9 scaffold_104 . CDS 108889 109755 . - 0 ID=Phyra96772;Parent=Phyra96772;rank=8 scaffold_104 . CDS 109987 110457 . - 0 ID=Phyra96772;Parent=Phyra96772;rank=7 scaffold_104 . CDS 110824 110968 . - 0 ID=Phyra96772;Parent=Phyra96772;rank=6 scaffold_104 . CDS 111029 113152 . - 0 ID=Phyra96772;Parent=Phyra96772;rank=5 scaffold_104 . CDS 113195 113692 . - 0 ID=Phyra96772;Parent=Phyra96772;rank=4 scaffold_104 . CDS 113716 113725 . - 0 ID=Phyra96772;Parent=Phyra96772;rank=3 scaffold_104 . CDS 113766 114130 . - 0 ID=Phyra96772;Parent=Phyra96772;rank=2 scaffold_104 . CDS 114190 114564 . - 0 ID=Phyra96772;Parent=Phyra96772;rank=1 scaffold_104 . repeat_region 115897 115946 . ? . description=dust scaffold_104 ensembl protein_coding_gene 116621 116938 . - . ID=Phyra84143;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000031;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 116621 116938 . - . ID=Phyra84143;Parent=Phyra84143;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 116621 116938 . - 0 ID=Phyra84143;Parent=Phyra84143;rank=1 scaffold_104 . exon 116621 116938 . - . ID=Phyra84143.1;Parent=Phyra84143;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 117593 118774 . - . ID=Phyra84144;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000032;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 117593 118774 . - . ID=Phyra84144;Parent=Phyra84144;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 117593 118774 . - 0 ID=Phyra84144;Parent=Phyra84144;rank=1 scaffold_104 . exon 117593 118774 . - . ID=Phyra84144.1;Parent=Phyra84144;constitutive=1;rank=1 scaffold_104 . exon 108233 108819 . - . ID=Phyra96772.9;Parent=Phyra96772;constitutive=1;ensembl_phase=1;rank=9 scaffold_104 . exon 108889 109755 . - . ID=Phyra96772.8;Parent=Phyra96772;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_104 . exon 109987 110457 . - . ID=Phyra96772.7;Parent=Phyra96772;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_104 . exon 110824 110968 . - . ID=Phyra96772.6;Parent=Phyra96772;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_104 . exon 111029 113152 . - . ID=Phyra96772.5;Parent=Phyra96772;constitutive=1;rank=5 scaffold_104 . exon 113195 113692 . - . ID=Phyra96772.4;Parent=Phyra96772;constitutive=1;rank=4 scaffold_104 . exon 113716 113725 . - . ID=Phyra96772.3;Parent=Phyra96772;constitutive=1;ensembl_phase=2;rank=3 scaffold_104 . exon 113766 114130 . - . ID=Phyra96772.2;Parent=Phyra96772;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_104 . exon 114190 114564 . - . ID=Phyra96772.1;Parent=Phyra96772;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 115356 115673 . + . ID=Phyra96773;biotype=protein_coding;external_name=C_scaffold_104000010;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 115356 115673 . + . ID=Phyra96773;Parent=Phyra96773;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 115356 115673 . + 0 ID=Phyra96773;Parent=Phyra96773;rank=1 scaffold_104 . exon 115356 115673 . + . ID=Phyra96773.1;Parent=Phyra96773;constitutive=1;rank=1 scaffold_104 . biological_region 124213 124214 0.999 + . logic_name=eponine scaffold_104 . biological_region 124292 124294 0.999 - . logic_name=eponine scaffold_104 ensembl protein_coding_gene 123623 124420 . - . ID=Phyra84145;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000033;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 123623 124420 . - . ID=Phyra84145;Parent=Phyra84145;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 123623 124420 . - 0 ID=Phyra84145;Parent=Phyra84145;rank=1 scaffold_104 . exon 123623 124420 . - . ID=Phyra84145.1;Parent=Phyra84145;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 124770 126929 . + . ID=Phyra84146;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000034;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 124770 126929 . + . ID=Phyra84146;Parent=Phyra84146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 124770 125063 . + 0 ID=Phyra84146;Parent=Phyra84146;rank=1 scaffold_104 . exon 124770 125063 . + . ID=Phyra84146.1;Parent=Phyra84146;constitutive=1;rank=1 scaffold_104 . CDS 125139 126929 . + 0 ID=Phyra84146;Parent=Phyra84146;rank=2 scaffold_104 . exon 125139 126929 . + . ID=Phyra84146.2;Parent=Phyra84146;constitutive=1;rank=2 scaffold_104 ensembl protein_coding_gene 126977 130221 . - . ID=Phyra96775;biotype=protein_coding;external_name=C_scaffold_104000012;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 126977 130221 . - . ID=Phyra96775;Parent=Phyra96775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 126977 127685 . - 0 ID=Phyra96775;Parent=Phyra96775;rank=4 scaffold_104 . exon 126977 127685 . - . ID=Phyra96775.4;Parent=Phyra96775;constitutive=1;ensembl_phase=2;rank=4 scaffold_104 . CDS 128068 128670 . - 0 ID=Phyra96775;Parent=Phyra96775;rank=3 scaffold_104 . CDS 128738 128998 . - 0 ID=Phyra96775;Parent=Phyra96775;rank=2 scaffold_104 . CDS 129335 130221 . - 0 ID=Phyra96775;Parent=Phyra96775;rank=1 scaffold_104 ensembl protein_coding_gene 135266 137568 . + . ID=Phyra72196;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_104000007;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 135266 137568 . + . ID=Phyra72196;Parent=Phyra72196;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 135266 135405 . + 0 ID=Phyra72196;Parent=Phyra72196;rank=1 scaffold_104 . exon 135266 135405 . + . ID=Phyra72196.1;Parent=Phyra72196;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_104 . CDS 135470 136245 . + 0 ID=Phyra72196;Parent=Phyra72196;rank=2 scaffold_104 . exon 135470 136245 . + . ID=Phyra72196.2;Parent=Phyra72196;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_104 . CDS 136311 136511 . + 0 ID=Phyra72196;Parent=Phyra72196;rank=3 scaffold_104 . exon 136311 136511 . + . ID=Phyra72196.3;Parent=Phyra72196;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_104 . CDS 136574 137464 . + 0 ID=Phyra72196;Parent=Phyra72196;rank=4 scaffold_104 . exon 136574 137464 . + . ID=Phyra72196.4;Parent=Phyra72196;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_104 . CDS 137501 137568 . + 0 ID=Phyra72196;Parent=Phyra72196;rank=5 scaffold_104 . exon 137501 137568 . + . ID=Phyra72196.5;Parent=Phyra72196;constitutive=1;ensembl_phase=1;rank=5 scaffold_104 ensembl protein_coding_gene 130677 132594 . - . ID=Phyra84149;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000037;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 130677 132594 . - . ID=Phyra84149;Parent=Phyra84149;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 130677 131223 . - 0 ID=Phyra84149;Parent=Phyra84149;rank=4 scaffold_104 . exon 130677 131223 . - . ID=Phyra84149.4;Parent=Phyra84149;constitutive=1;ensembl_phase=2;rank=4 scaffold_104 . CDS 131286 131657 . - 0 ID=Phyra84149;Parent=Phyra84149;rank=3 scaffold_104 . exon 131286 131657 . - . ID=Phyra84149.3;Parent=Phyra84149;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_104 . CDS 131764 132312 . - 0 ID=Phyra84149;Parent=Phyra84149;rank=2 scaffold_104 . exon 131764 132312 . - . ID=Phyra84149.2;Parent=Phyra84149;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_104 . CDS 132404 132594 . - 0 ID=Phyra84149;Parent=Phyra84149;rank=1 scaffold_104 . exon 132404 132594 . - . ID=Phyra84149.1;Parent=Phyra84149;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_104 ensembl protein_coding_gene 134262 135011 . - . ID=Phyra84150;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000038;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 134262 135011 . - . ID=Phyra84150;Parent=Phyra84150;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 134262 135011 . - 0 ID=Phyra84150;Parent=Phyra84150;rank=1 scaffold_104 . exon 134262 135011 . - . ID=Phyra84150.1;Parent=Phyra84150;constitutive=1;rank=1 scaffold_104 . exon 128068 128670 . - . ID=Phyra96775.3;Parent=Phyra96775;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_104 . exon 128738 128998 . - . ID=Phyra96775.2;Parent=Phyra96775;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_104 . exon 129335 130221 . - . ID=Phyra96775.1;Parent=Phyra96775;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_104 . repeat_region 139194 139393 . ? . description=trf scaffold_104 . repeat_region 139945 139952 . ? . description=dust scaffold_104 . biological_region 142632 142632 0.999 - . logic_name=eponine scaffold_104 ensembl protein_coding_gene 143270 144295 . - . ID=Phyra72197;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_104000008;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 143270 144295 . - . ID=Phyra72197;Parent=Phyra72197;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 143270 144295 . - 0 ID=Phyra72197;Parent=Phyra72197;rank=1 scaffold_104 . exon 143270 144295 . - . ID=Phyra72197.1;Parent=Phyra72197;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 137703 138981 . - . ID=Phyra84152;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000040;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 137703 138981 . - . ID=Phyra84152;Parent=Phyra84152;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 137703 138529 . - 0 ID=Phyra84152;Parent=Phyra84152;rank=2 scaffold_104 . exon 137703 138529 . - . ID=Phyra84152.2;Parent=Phyra84152;constitutive=1;ensembl_phase=1;rank=2 scaffold_104 . CDS 138603 138981 . - 0 ID=Phyra84152;Parent=Phyra84152;rank=1 scaffold_104 . exon 138603 138981 . - . ID=Phyra84152.1;Parent=Phyra84152;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_104 ensembl protein_coding_gene 142444 142843 . + . ID=Phyra84153;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000041;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 142444 142843 . + . ID=Phyra84153;Parent=Phyra84153;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 142444 142729 . + 0 ID=Phyra84153;Parent=Phyra84153;rank=1 scaffold_104 . exon 142444 142729 . + . ID=Phyra84153.1;Parent=Phyra84153;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_104 . CDS 142806 142843 . + 0 ID=Phyra84153;Parent=Phyra84153;rank=2 scaffold_104 . exon 142806 142843 . + . ID=Phyra84153.2;Parent=Phyra84153;constitutive=1;ensembl_phase=1;rank=2 scaffold_104 ensembl protein_coding_gene 146062 146900 . - . ID=Phyra84155;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000043;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 146062 146900 . - . ID=Phyra84155;Parent=Phyra84155;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 146062 146156 . - 0 ID=Phyra84155;Parent=Phyra84155;rank=5 scaffold_104 . exon 146062 146156 . - . ID=Phyra84155.5;Parent=Phyra84155;constitutive=1;ensembl_phase=1;rank=5 scaffold_104 . CDS 146230 146332 . - 0 ID=Phyra84155;Parent=Phyra84155;rank=4 scaffold_104 . exon 146230 146332 . - . ID=Phyra84155.4;Parent=Phyra84155;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_104 . CDS 146405 146519 . - 0 ID=Phyra84155;Parent=Phyra84155;rank=3 scaffold_104 . exon 146405 146519 . - . ID=Phyra84155.3;Parent=Phyra84155;constitutive=1;ensembl_phase=2;rank=3 scaffold_104 . CDS 146589 146704 . - 0 ID=Phyra84155;Parent=Phyra84155;rank=2 scaffold_104 . exon 146589 146704 . - . ID=Phyra84155.2;Parent=Phyra84155;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_104 . CDS 146772 146900 . - 0 ID=Phyra84155;Parent=Phyra84155;rank=1 scaffold_104 . exon 146772 146900 . - . ID=Phyra84155.1;Parent=Phyra84155;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 148260 148955 . - . ID=Phyra84156;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000044;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 148260 148955 . - . ID=Phyra84156;Parent=Phyra84156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 148260 148955 . - 0 ID=Phyra84156;Parent=Phyra84156;rank=1 scaffold_104 . exon 148260 148955 . - . ID=Phyra84156.1;Parent=Phyra84156;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 150117 150578 . + . ID=Phyra84157;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000045;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 150117 150578 . + . ID=Phyra84157;Parent=Phyra84157;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 150117 150578 . + 0 ID=Phyra84157;Parent=Phyra84157;rank=1 scaffold_104 . exon 150117 150578 . + . ID=Phyra84157.1;Parent=Phyra84157;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 152593 154425 . - . ID=Phyra84158;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000046;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 152593 154425 . - . ID=Phyra84158;Parent=Phyra84158;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 152593 152715 . - 0 ID=Phyra84158;Parent=Phyra84158;rank=3 scaffold_104 . exon 152593 152715 . - . ID=Phyra84158.3;Parent=Phyra84158;constitutive=1;rank=3 scaffold_104 . CDS 152785 152900 . - 0 ID=Phyra84158;Parent=Phyra84158;rank=2 scaffold_104 . exon 152785 152900 . - . ID=Phyra84158.2;Parent=Phyra84158;constitutive=1;ensembl_phase=1;rank=2 scaffold_104 . CDS 152964 154425 . - 0 ID=Phyra84158;Parent=Phyra84158;rank=1 scaffold_104 . exon 152964 154425 . - . ID=Phyra84158.1;Parent=Phyra84158;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_104 ensembl protein_coding_gene 156375 157241 . + . ID=Phyra84159;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_104000047;logic_name=jgi_phyra1 scaffold_104 ensembl transcript 156375 157241 . + . ID=Phyra84159;Parent=Phyra84159;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_104 . CDS 156375 157241 . + 0 ID=Phyra84159;Parent=Phyra84159;rank=1 scaffold_104 . exon 156375 157241 . + . ID=Phyra84159.1;Parent=Phyra84159;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_91 1 158530 scaffold_91 . repeat_region 1 124 . - . description=Sola3-2_PS scaffold_91 . repeat_region 478 961 . - . description=Sola3-2_PS scaffold_91 . biological_region 508 510 0.999 - . logic_name=eponine scaffold_91 . biological_region 531 537 0.999 - . logic_name=eponine scaffold_91 . biological_region 2855 2859 0.999 - . logic_name=eponine scaffold_91 . biological_region 2954 2954 0.999 - . logic_name=eponine scaffold_91 . biological_region 3345 3349 0.999 - . logic_name=eponine scaffold_91 . biological_region 4291 4291 0.999 + . logic_name=eponine scaffold_91 . biological_region 6141 6146 0.999 - . logic_name=eponine scaffold_91 . repeat_region 8398 8428 . ? . description=trf scaffold_91 ensembl protein_coding_gene 2441 4000 . + . ID=Phyra72129;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_91000001;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 2441 4000 . + . ID=Phyra72129;Parent=Phyra72129;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 2441 4000 . + 0 ID=Phyra72129;Parent=Phyra72129;rank=1 scaffold_91 . exon 2441 4000 . + . ID=Phyra72129.1;Parent=Phyra72129;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 7342 8563 . - . ID=Phyra72130;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_91000002;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 7342 8563 . - . ID=Phyra72130;Parent=Phyra72130;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 7342 7368 . - 0 ID=Phyra72130;Parent=Phyra72130;rank=3 scaffold_91 . exon 7342 7368 . - . ID=Phyra72130.3;Parent=Phyra72130;constitutive=1;rank=3 scaffold_91 . CDS 7429 8169 . - 0 ID=Phyra72130;Parent=Phyra72130;rank=2 scaffold_91 . exon 7429 8169 . - . ID=Phyra72130.2;Parent=Phyra72130;constitutive=1;rank=2 scaffold_91 . CDS 8228 8563 . - 0 ID=Phyra72130;Parent=Phyra72130;rank=1 scaffold_91 . exon 8228 8563 . - . ID=Phyra72130.1;Parent=Phyra72130;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 28 1334 . - . ID=Phyra83558;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000001;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 28 1334 . - . ID=Phyra83558;Parent=Phyra83558;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 28 1334 . - 0 ID=Phyra83558;Parent=Phyra83558;rank=1 scaffold_91 . exon 28 1334 . - . ID=Phyra83558.1;Parent=Phyra83558;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_91 ensembl protein_coding_gene 4292 7219 . + . ID=Phyra83560;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000003;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 4292 7219 . + . ID=Phyra83560;Parent=Phyra83560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 4292 4433 . + 0 ID=Phyra83560;Parent=Phyra83560;rank=1 scaffold_91 . exon 4292 4433 . + . ID=Phyra83560.1;Parent=Phyra83560;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_91 . CDS 4497 4783 . + 0 ID=Phyra83560;Parent=Phyra83560;rank=2 scaffold_91 . exon 4497 4783 . + . ID=Phyra83560.2;Parent=Phyra83560;constitutive=1;ensembl_phase=1;rank=2 scaffold_91 . CDS 4880 5098 . + 0 ID=Phyra83560;Parent=Phyra83560;rank=3 scaffold_91 . exon 4880 5098 . + . ID=Phyra83560.3;Parent=Phyra83560;constitutive=1;rank=3 scaffold_91 . CDS 5163 5244 . + 0 ID=Phyra83560;Parent=Phyra83560;rank=4 scaffold_91 . exon 5163 5244 . + . ID=Phyra83560.4;Parent=Phyra83560;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_91 . CDS 5324 5542 . + 0 ID=Phyra83560;Parent=Phyra83560;rank=5 scaffold_91 . exon 5324 5542 . + . ID=Phyra83560.5;Parent=Phyra83560;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_91 . CDS 5706 7219 . + 0 ID=Phyra83560;Parent=Phyra83560;rank=6 scaffold_91 . exon 5706 7219 . + . ID=Phyra83560.6;Parent=Phyra83560;constitutive=1;ensembl_phase=1;rank=6 scaffold_91 . repeat_region 10154 10171 . ? . description=dust scaffold_91 . repeat_region 16714 16740 . ? . description=dust scaffold_91 ensembl protein_coding_gene 12344 13435 . - . ID=Phyra54493;biotype=protein_coding;external_name=gwEuk.91.19.1;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 12344 13435 . - . ID=Phyra54493;Parent=Phyra54493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 12344 13435 . - 0 ID=Phyra54493;Parent=Phyra54493;rank=1 scaffold_91 . exon 12344 13435 . - . ID=Phyra54493.1;Parent=Phyra54493;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 10336 11570 . - . ID=Phyra83562;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000005;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 10336 11570 . - . ID=Phyra83562;Parent=Phyra83562;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 10336 11163 . - 0 ID=Phyra83562;Parent=Phyra83562;rank=2 scaffold_91 . exon 10336 11163 . - . ID=Phyra83562.2;Parent=Phyra83562;constitutive=1;rank=2 scaffold_91 . CDS 11226 11570 . - 0 ID=Phyra83562;Parent=Phyra83562;rank=1 scaffold_91 . exon 11226 11570 . - . ID=Phyra83562.1;Parent=Phyra83562;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 15489 16577 . + . ID=Phyra83564;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000007;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 15489 16577 . + . ID=Phyra83564;Parent=Phyra83564;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 15489 16577 . + 0 ID=Phyra83564;Parent=Phyra83564;rank=1 scaffold_91 . exon 15489 16577 . + . ID=Phyra83564.1;Parent=Phyra83564;constitutive=1;rank=1 scaffold_91 . repeat_region 24019 24059 . ? . description=trf scaffold_91 ensembl protein_coding_gene 20666 21076 . + . ID=Phyra54500;biotype=protein_coding;external_name=gwEuk.91.26.1;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 20666 21076 . + . ID=Phyra54500;Parent=Phyra54500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 20666 21076 . + 0 ID=Phyra54500;Parent=Phyra54500;rank=1 scaffold_91 . exon 20666 21076 . + . ID=Phyra54500.1;Parent=Phyra54500;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 29297 30442 . + . ID=Phyra72132;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_91000004;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 29297 30442 . + . ID=Phyra72132;Parent=Phyra72132;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 29297 30442 . + 0 ID=Phyra72132;Parent=Phyra72132;rank=1 scaffold_91 . exon 29297 30442 . + . ID=Phyra72132.1;Parent=Phyra72132;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 26758 27846 . + . ID=Phyra83565;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000008;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 26758 27846 . + . ID=Phyra83565;Parent=Phyra83565;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 26758 27846 . + 0 ID=Phyra83565;Parent=Phyra83565;rank=1 scaffold_91 . exon 26758 27846 . + . ID=Phyra83565.1;Parent=Phyra83565;constitutive=1;rank=1 scaffold_91 . repeat_region 31258 31265 . ? . description=dust scaffold_91 . repeat_region 32656 32695 . ? . description=dust scaffold_91 . repeat_region 33972 33981 . ? . description=dust scaffold_91 . repeat_region 34118 34125 . ? . description=dust scaffold_91 . repeat_region 34409 34417 . ? . description=dust scaffold_91 . repeat_region 36044 36054 . ? . description=dust scaffold_91 . repeat_region 37514 37553 . ? . description=dust scaffold_91 . repeat_region 37709 37758 . ? . description=dust scaffold_91 . repeat_region 38817 38825 . ? . description=dust scaffold_91 . repeat_region 38834 40519 . ? . description=dust scaffold_91 ensembl protein_coding_gene 32437 33709 . + . ID=Phyra72133;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_91000005;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 32437 33709 . + . ID=Phyra72133;Parent=Phyra72133;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 32437 32535 . + 0 ID=Phyra72133;Parent=Phyra72133;rank=1 scaffold_91 . exon 32437 32535 . + . ID=Phyra72133.1;Parent=Phyra72133;constitutive=1;rank=1 scaffold_91 . CDS 32660 33709 . + 0 ID=Phyra72133;Parent=Phyra72133;rank=2 scaffold_91 . exon 32660 33709 . + . ID=Phyra72133.2;Parent=Phyra72133;constitutive=1;rank=2 scaffold_91 ensembl protein_coding_gene 34504 35622 . + . ID=Phyra83568;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000011;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 34504 35622 . + . ID=Phyra83568;Parent=Phyra83568;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 34504 35622 . + 0 ID=Phyra83568;Parent=Phyra83568;rank=1 scaffold_91 . exon 34504 35622 . + . ID=Phyra83568.1;Parent=Phyra83568;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 37389 38014 . + . ID=Phyra83569;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000012;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 37389 38014 . + . ID=Phyra83569;Parent=Phyra83569;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 37389 37637 . + 0 ID=Phyra83569;Parent=Phyra83569;rank=1 scaffold_91 . exon 37389 37637 . + . ID=Phyra83569.1;Parent=Phyra83569;constitutive=1;rank=1 scaffold_91 . CDS 37778 38014 . + 0 ID=Phyra83569;Parent=Phyra83569;rank=2 scaffold_91 . exon 37778 38014 . + . ID=Phyra83569.2;Parent=Phyra83569;constitutive=1;rank=2 scaffold_91 . repeat_region 41480 41510 . ? . description=trf scaffold_91 . biological_region 46195 46199 0.999 + . logic_name=eponine scaffold_91 . biological_region 46296 46297 0.999 - . logic_name=eponine scaffold_91 . repeat_region 47911 47968 . ? . description=trf scaffold_91 . biological_region 48773 48773 0.999 + . logic_name=eponine scaffold_91 . repeat_region 48885 48904 . ? . description=trf scaffold_91 ensembl protein_coding_gene 41888 42877 . + . ID=Phyra54527;biotype=protein_coding;external_name=gwEuk.91.53.1;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 41888 42877 . + . ID=Phyra54527;Parent=Phyra54527;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 41888 42877 . + 0 ID=Phyra54527;Parent=Phyra54527;rank=1 scaffold_91 . exon 41888 42877 . + . ID=Phyra54527.1;Parent=Phyra54527;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 45944 47029 . + . ID=Phyra72134;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_91000006;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 45944 47029 . + . ID=Phyra72134;Parent=Phyra72134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 45944 47029 . + 0 ID=Phyra72134;Parent=Phyra72134;rank=1 scaffold_91 . exon 45944 47029 . + . ID=Phyra72134.1;Parent=Phyra72134;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 47393 48478 . - . ID=Phyra72135;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_91000007;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 47393 48478 . - . ID=Phyra72135;Parent=Phyra72135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 47393 48478 . - 0 ID=Phyra72135;Parent=Phyra72135;rank=1 scaffold_91 . exon 47393 48478 . - . ID=Phyra72135.1;Parent=Phyra72135;constitutive=1;rank=1 scaffold_91 . repeat_region 50994 51007 . ? . description=dust scaffold_91 . repeat_region 57724 57912 . - . description=Sola3-2_PS scaffold_91 . repeat_region 59163 59179 . ? . description=dust scaffold_91 ensembl protein_coding_gene 49635 50547 . - . ID=Phyra83573;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000016;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 49635 50547 . - . ID=Phyra83573;Parent=Phyra83573;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 49635 50231 . - 0 ID=Phyra83573;Parent=Phyra83573;rank=2 scaffold_91 . exon 49635 50231 . - . ID=Phyra83573.2;Parent=Phyra83573;constitutive=1;rank=2 scaffold_91 . CDS 50290 50547 . - 0 ID=Phyra83573;Parent=Phyra83573;rank=1 scaffold_91 . exon 50290 50547 . - . ID=Phyra83573.1;Parent=Phyra83573;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 51534 52678 . - . ID=Phyra83574;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000017;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 51534 52678 . - . ID=Phyra83574;Parent=Phyra83574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 51534 51702 . - 0 ID=Phyra83574;Parent=Phyra83574;rank=3 scaffold_91 . exon 51534 51702 . - . ID=Phyra83574.3;Parent=Phyra83574;constitutive=1;ensembl_phase=2;rank=3 scaffold_91 . CDS 51734 52356 . - 0 ID=Phyra83574;Parent=Phyra83574;rank=2 scaffold_91 . exon 51734 52356 . - . ID=Phyra83574.2;Parent=Phyra83574;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_91 . CDS 52421 52678 . - 0 ID=Phyra83574;Parent=Phyra83574;rank=1 scaffold_91 . exon 52421 52678 . - . ID=Phyra83574.1;Parent=Phyra83574;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 53427 54665 . - . ID=Phyra83575;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000018;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 53427 54665 . - . ID=Phyra83575;Parent=Phyra83575;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 53427 54665 . - 0 ID=Phyra83575;Parent=Phyra83575;rank=1 scaffold_91 . exon 53427 54665 . - . ID=Phyra83575.1;Parent=Phyra83575;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 57082 58887 . - . ID=Phyra83576;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000019;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 57082 58887 . - . ID=Phyra83576;Parent=Phyra83576;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 57082 58887 . - 0 ID=Phyra83576;Parent=Phyra83576;rank=1 scaffold_91 . exon 57082 58887 . - . ID=Phyra83576.1;Parent=Phyra83576;constitutive=1;rank=1 scaffold_91 . biological_region 67150 67152 0.999 - . logic_name=eponine scaffold_91 . biological_region 68301 68303 0.999 - . logic_name=eponine scaffold_91 ensembl protein_coding_gene 61795 64122 . - . ID=Phyra83577;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000020;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 61795 64122 . - . ID=Phyra83577;Parent=Phyra83577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 61795 64122 . - 0 ID=Phyra83577;Parent=Phyra83577;rank=1 scaffold_91 . exon 61795 64122 . - . ID=Phyra83577.1;Parent=Phyra83577;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 66974 68785 . + . ID=Phyra83578;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000021;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 66974 68785 . + . ID=Phyra83578;Parent=Phyra83578;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 66974 68785 . + 0 ID=Phyra83578;Parent=Phyra83578;rank=1 scaffold_91 . exon 66974 68785 . + . ID=Phyra83578.1;Parent=Phyra83578;constitutive=1;rank=1 scaffold_91 . repeat_region 76580 76595 . ? . description=dust scaffold_91 . repeat_region 77336 77384 . ? . description=trf scaffold_91 ensembl protein_coding_gene 70549 72888 . + . ID=Phyra83579;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000022;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 70549 72888 . + . ID=Phyra83579;Parent=Phyra83579;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 70549 72888 . + 0 ID=Phyra83579;Parent=Phyra83579;rank=1 scaffold_91 . exon 70549 72888 . + . ID=Phyra83579.1;Parent=Phyra83579;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 73166 75225 . - . ID=Phyra83580;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000023;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 73166 75225 . - . ID=Phyra83580;Parent=Phyra83580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 73166 73288 . - 0 ID=Phyra83580;Parent=Phyra83580;rank=2 scaffold_91 . exon 73166 73288 . - . ID=Phyra83580.2;Parent=Phyra83580;constitutive=1;rank=2 scaffold_91 . CDS 73327 75225 . - 0 ID=Phyra83580;Parent=Phyra83580;rank=1 scaffold_91 . exon 73327 75225 . - . ID=Phyra83580.1;Parent=Phyra83580;constitutive=1;rank=1 scaffold_91 . biological_region 83224 83226 0.999 - . logic_name=eponine scaffold_91 . biological_region 83317 83320 0.999 - . logic_name=eponine scaffold_91 . repeat_region 83809 83925 . - . description=GypsyPi-1c_I-int scaffold_91 . biological_region 84279 84286 0.999 - . logic_name=eponine scaffold_91 . repeat_region 91031 91080 . ? . description=dust scaffold_91 . repeat_region 92425 92464 . ? . description=trf scaffold_91 . repeat_region 93462 93681 . + . description=GypsyPi-1c_LTR scaffold_91 . repeat_region 97770 97780 . ? . description=dust scaffold_91 . repeat_region 98291 98311 . ? . description=trf scaffold_91 . repeat_region 98291 98311 . ? . description=dust scaffold_91 ensembl protein_coding_gene 102298 103180 . - . ID=Phyra54550;biotype=protein_coding;external_name=gwEuk.91.76.1;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 102298 103180 . - . ID=Phyra54550;Parent=Phyra54550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 102298 102360 . - 0 ID=Phyra54550;Parent=Phyra54550;rank=2 scaffold_91 . exon 102298 102360 . - . ID=Phyra54550.2;Parent=Phyra54550;constitutive=1;rank=2 scaffold_91 . CDS 102434 103180 . - 0 ID=Phyra54550;Parent=Phyra54550;rank=1 scaffold_91 . exon 102434 103180 . - . ID=Phyra54550.1;Parent=Phyra54550;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 105990 106454 . - . ID=Phyra83582;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000025;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 105990 106454 . - . ID=Phyra83582;Parent=Phyra83582;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 105990 106454 . - 0 ID=Phyra83582;Parent=Phyra83582;rank=1 scaffold_91 . exon 105990 106454 . - . ID=Phyra83582.1;Parent=Phyra83582;constitutive=1;rank=1 scaffold_91 . repeat_region 109013 109068 . ? . description=dust scaffold_91 . biological_region 109186 109187 0.999 + . logic_name=eponine scaffold_91 . biological_region 109265 109265 0.999 + . logic_name=eponine scaffold_91 . biological_region 109343 109345 0.999 - . logic_name=eponine scaffold_91 . biological_region 113232 113234 0.999 + . logic_name=eponine scaffold_91 . biological_region 113312 113312 0.999 - . logic_name=eponine scaffold_91 . biological_region 113390 113391 0.999 - . logic_name=eponine scaffold_91 ensembl protein_coding_gene 113964 114656 . + . ID=Phyra83583;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000026;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 113964 114656 . + . ID=Phyra83583;Parent=Phyra83583;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 113964 114656 . + 0 ID=Phyra83583;Parent=Phyra83583;rank=1 scaffold_91 . exon 113964 114656 . + . ID=Phyra83583.1;Parent=Phyra83583;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 117604 117977 . - . ID=Phyra83584;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000027;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 117604 117977 . - . ID=Phyra83584;Parent=Phyra83584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 117604 117615 . - 0 ID=Phyra83584;Parent=Phyra83584;rank=2 scaffold_91 . exon 117604 117615 . - . ID=Phyra83584.2;Parent=Phyra83584;constitutive=1;rank=2 scaffold_91 . CDS 117681 117977 . - 0 ID=Phyra83584;Parent=Phyra83584;rank=1 scaffold_91 . exon 117681 117977 . - . ID=Phyra83584.1;Parent=Phyra83584;constitutive=1;rank=1 scaffold_91 . repeat_region 123059 123081 . ? . description=trf scaffold_91 ensembl protein_coding_gene 120836 123292 . + . ID=Phyra83585;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000028;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 120836 123292 . + . ID=Phyra83585;Parent=Phyra83585;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 120836 123292 . + 0 ID=Phyra83585;Parent=Phyra83585;rank=1 scaffold_91 . exon 120836 123292 . + . ID=Phyra83585.1;Parent=Phyra83585;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 128458 128964 . - . ID=Phyra83587;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000030;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 128458 128964 . - . ID=Phyra83587;Parent=Phyra83587;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 128458 128964 . - 0 ID=Phyra83587;Parent=Phyra83587;rank=1 scaffold_91 . exon 128458 128964 . - . ID=Phyra83587.1;Parent=Phyra83587;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 123488 124408 . - . ID=Phyra96643;biotype=protein_coding;external_name=C_scaffold_91000004;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 123488 124408 . - . ID=Phyra96643;Parent=Phyra96643;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 123488 124408 . - 0 ID=Phyra96643;Parent=Phyra96643;rank=1 scaffold_91 . exon 123488 124408 . - . ID=Phyra96643.1;Parent=Phyra96643;constitutive=1;rank=1 scaffold_91 . repeat_region 137563 137573 . ? . description=dust scaffold_91 ensembl protein_coding_gene 130252 131041 . + . ID=Phyra54557;biotype=protein_coding;external_name=gwEuk.91.83.1;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 130252 131041 . + . ID=Phyra54557;Parent=Phyra54557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 130252 130905 . + 0 ID=Phyra54557;Parent=Phyra54557;rank=1 scaffold_91 . exon 130252 130905 . + . ID=Phyra54557.1;Parent=Phyra54557;constitutive=1;rank=1 scaffold_91 . CDS 130979 131041 . + 0 ID=Phyra54557;Parent=Phyra54557;rank=2 scaffold_91 . exon 130979 131041 . + . ID=Phyra54557.2;Parent=Phyra54557;constitutive=1;rank=2 scaffold_91 . biological_region 141382 141385 0.999 - . logic_name=eponine scaffold_91 . biological_region 141713 141717 0.999 + . logic_name=eponine scaffold_91 . biological_region 142717 142718 0.999 + . logic_name=eponine scaffold_91 . biological_region 142788 142788 0.999 - . logic_name=eponine scaffold_91 . repeat_region 142894 142919 . ? . description=trf scaffold_91 ensembl protein_coding_gene 140386 141090 . - . ID=Phyra83589;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000032;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 140386 141090 . - . ID=Phyra83589;Parent=Phyra83589;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 140386 141090 . - 0 ID=Phyra83589;Parent=Phyra83589;rank=1 scaffold_91 . exon 140386 141090 . - . ID=Phyra83589.1;Parent=Phyra83589;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 142025 142834 . + . ID=Phyra83590;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000033;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 142025 142834 . + . ID=Phyra83590;Parent=Phyra83590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 142025 142479 . + 0 ID=Phyra83590;Parent=Phyra83590;rank=1 scaffold_91 . exon 142025 142479 . + . ID=Phyra83590.1;Parent=Phyra83590;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_91 . CDS 142558 142834 . + 0 ID=Phyra83590;Parent=Phyra83590;rank=2 scaffold_91 . exon 142558 142834 . + . ID=Phyra83590.2;Parent=Phyra83590;constitutive=1;ensembl_phase=2;rank=2 scaffold_91 ensembl protein_coding_gene 143706 144212 . + . ID=Phyra96644;biotype=protein_coding;external_name=C_scaffold_91000005;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 143706 144212 . + . ID=Phyra96644;Parent=Phyra96644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 143706 144212 . + 0 ID=Phyra96644;Parent=Phyra96644;rank=1 scaffold_91 . exon 143706 144212 . + . ID=Phyra96644.1;Parent=Phyra96644;constitutive=1;rank=1 scaffold_91 . repeat_region 150308 150328 . ? . description=dust scaffold_91 . repeat_region 152816 152871 . ? . description=dust scaffold_91 . repeat_region 153591 153602 . ? . description=dust scaffold_91 . repeat_region 154461 154538 . ? . description=dust scaffold_91 . repeat_region 155496 155560 . ? . description=dust scaffold_91 . repeat_region 155843 155851 . ? . description=dust scaffold_91 . repeat_region 156613 156662 . ? . description=dust scaffold_91 ensembl protein_coding_gene 148749 149462 . - . ID=Phyra83592;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000035;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 148749 149462 . - . ID=Phyra83592;Parent=Phyra83592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 148749 149462 . - 0 ID=Phyra83592;Parent=Phyra83592;rank=1 scaffold_91 . exon 148749 149462 . - . ID=Phyra83592.1;Parent=Phyra83592;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 151126 151815 . + . ID=Phyra83593;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000036;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 151126 151815 . + . ID=Phyra83593;Parent=Phyra83593;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 151126 151815 . + 0 ID=Phyra83593;Parent=Phyra83593;rank=1 scaffold_91 . exon 151126 151815 . + . ID=Phyra83593.1;Parent=Phyra83593;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 156335 158047 . - . ID=Phyra83594;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_91000037;logic_name=jgi_phyra1 scaffold_91 ensembl transcript 156335 158047 . - . ID=Phyra83594;Parent=Phyra83594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_91 . CDS 156335 156349 . - 0 ID=Phyra83594;Parent=Phyra83594;rank=2 scaffold_91 . exon 156335 156349 . - . ID=Phyra83594.2;Parent=Phyra83594;constitutive=1;rank=2 scaffold_91 . CDS 156755 158047 . - 0 ID=Phyra83594;Parent=Phyra83594;rank=1 scaffold_91 . exon 156755 158047 . - . ID=Phyra83594.1;Parent=Phyra83594;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_103 1 158945 scaffold_103 . repeat_region 168 203 . ? . description=trf scaffold_103 . repeat_region 179 204 . ? . description=dust scaffold_103 . repeat_region 303 349 . ? . description=trf scaffold_103 . biological_region 1139 1142 0.999 + . logic_name=eponine scaffold_103 . biological_region 1579 1583 0.999 + . logic_name=eponine scaffold_103 . biological_region 4122 4127 0.999 - . logic_name=eponine scaffold_103 . repeat_region 4802 4845 . ? . description=dust scaffold_103 . repeat_region 4807 4850 . ? . description=trf scaffold_103 . repeat_region 5101 5127 . ? . description=dust scaffold_103 . repeat_region 5101 5160 . ? . description=trf scaffold_103 . repeat_region 7110 7124 . ? . description=dust scaffold_103 . biological_region 8357 8360 0.999 + . logic_name=eponine scaffold_103 ensembl protein_coding_gene 7737 8801 . - . ID=Phyra72186;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_103000001;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 7737 8801 . - . ID=Phyra72186;Parent=Phyra72186;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 7737 8801 . - 0 ID=Phyra72186;Parent=Phyra72186;rank=1 scaffold_103 . exon 7737 8801 . - . ID=Phyra72186.1;Parent=Phyra72186;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 1 3452 . + . ID=Phyra84070;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000001;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 1 3452 . + . ID=Phyra84070;Parent=Phyra84070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . exon 1 504 . + . ID=Phyra84070.1;Parent=Phyra84070;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_103 . CDS 3 504 . + 0 ID=Phyra84070;Parent=Phyra84070;rank=1 scaffold_103 . CDS 625 3452 . + 0 ID=Phyra84070;Parent=Phyra84070;rank=2 scaffold_103 . exon 625 3452 . + . ID=Phyra84070.2;Parent=Phyra84070;constitutive=1;ensembl_phase=1;rank=2 scaffold_103 ensembl protein_coding_gene 3523 5724 . - . ID=Phyra84071;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000002;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 3523 5724 . - . ID=Phyra84071;Parent=Phyra84071;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 3523 5724 . - 0 ID=Phyra84071;Parent=Phyra84071;rank=1 scaffold_103 . exon 3523 5724 . - . ID=Phyra84071.1;Parent=Phyra84071;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 5939 7105 . + . ID=Phyra84072;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000003;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 5939 7105 . + . ID=Phyra84072;Parent=Phyra84072;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 5939 7105 . + 0 ID=Phyra84072;Parent=Phyra84072;rank=1 scaffold_103 . exon 5939 7105 . + . ID=Phyra84072.1;Parent=Phyra84072;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 9511 9929 . - . ID=Phyra84074;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000005;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 9511 9929 . - . ID=Phyra84074;Parent=Phyra84074;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 9511 9705 . - 0 ID=Phyra84074;Parent=Phyra84074;rank=2 scaffold_103 . exon 9511 9705 . - . ID=Phyra84074.2;Parent=Phyra84074;constitutive=1;rank=2 scaffold_103 . CDS 9762 9929 . - 0 ID=Phyra84074;Parent=Phyra84074;rank=1 scaffold_103 . exon 9762 9929 . - . ID=Phyra84074.1;Parent=Phyra84074;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 10592 12806 . + . ID=Phyra84075;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000006;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 10592 12806 . + . ID=Phyra84075;Parent=Phyra84075;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 10592 10618 . + 0 ID=Phyra84075;Parent=Phyra84075;rank=1 scaffold_103 . exon 10592 10618 . + . ID=Phyra84075.1;Parent=Phyra84075;constitutive=1;rank=1 scaffold_103 . CDS 10756 10908 . + 0 ID=Phyra84075;Parent=Phyra84075;rank=2 scaffold_103 . exon 10756 10908 . + . ID=Phyra84075.2;Parent=Phyra84075;constitutive=1;rank=2 scaffold_103 . CDS 10979 11094 . + 0 ID=Phyra84075;Parent=Phyra84075;rank=3 scaffold_103 . exon 10979 11094 . + . ID=Phyra84075.3;Parent=Phyra84075;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_103 . CDS 11199 11225 . + 0 ID=Phyra84075;Parent=Phyra84075;rank=4 scaffold_103 . exon 11199 11225 . + . ID=Phyra84075.4;Parent=Phyra84075;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_103 . CDS 11382 11946 . + 0 ID=Phyra84075;Parent=Phyra84075;rank=5 scaffold_103 . exon 11382 11946 . + . ID=Phyra84075.5;Parent=Phyra84075;constitutive=1;ensembl_phase=2;rank=5 scaffold_103 . CDS 12009 12335 . + 0 ID=Phyra84075;Parent=Phyra84075;rank=6 scaffold_103 . exon 12009 12335 . + . ID=Phyra84075.6;Parent=Phyra84075;constitutive=1;rank=6 scaffold_103 . CDS 12389 12721 . + 0 ID=Phyra84075;Parent=Phyra84075;rank=7 scaffold_103 . exon 12389 12721 . + . ID=Phyra84075.7;Parent=Phyra84075;constitutive=1;rank=7 scaffold_103 . CDS 12798 12806 . + 0 ID=Phyra84075;Parent=Phyra84075;rank=8 scaffold_103 . exon 12798 12806 . + . ID=Phyra84075.8;Parent=Phyra84075;constitutive=1;rank=8 scaffold_103 ensembl protein_coding_gene 13108 14476 . - . ID=Phyra84076;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000007;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 13108 14476 . - . ID=Phyra84076;Parent=Phyra84076;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 13108 13799 . - 0 ID=Phyra84076;Parent=Phyra84076;rank=3 scaffold_103 . exon 13108 13799 . - . ID=Phyra84076.3;Parent=Phyra84076;constitutive=1;ensembl_phase=1;rank=3 scaffold_103 . CDS 13859 14127 . - 0 ID=Phyra84076;Parent=Phyra84076;rank=2 scaffold_103 . exon 13859 14127 . - . ID=Phyra84076.2;Parent=Phyra84076;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_103 . CDS 14196 14476 . - 0 ID=Phyra84076;Parent=Phyra84076;rank=1 scaffold_103 . exon 14196 14476 . - . ID=Phyra84076.1;Parent=Phyra84076;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 ensembl protein_coding_gene 14690 15436 . - . ID=Phyra84077;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000008;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 14690 15436 . - . ID=Phyra84077;Parent=Phyra84077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 14690 15436 . - 0 ID=Phyra84077;Parent=Phyra84077;rank=1 scaffold_103 . exon 14690 15436 . - . ID=Phyra84077.1;Parent=Phyra84077;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 16748 18229 . - . ID=Phyra84078;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000009;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 16748 18229 . - . ID=Phyra84078;Parent=Phyra84078;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 16748 18229 . - 0 ID=Phyra84078;Parent=Phyra84078;rank=1 scaffold_103 . exon 16748 18229 . - . ID=Phyra84078.1;Parent=Phyra84078;constitutive=1;rank=1 scaffold_103 . repeat_region 20285 28248 . ? . description=dust scaffold_103 . biological_region 33382 33382 0.999 - . logic_name=eponine scaffold_103 . biological_region 33694 33696 0.999 + . logic_name=eponine scaffold_103 . biological_region 34199 34200 0.999 + . logic_name=eponine scaffold_103 . biological_region 36145 36148 0.999 + . logic_name=eponine scaffold_103 . repeat_region 36594 36682 . ? . description=trf scaffold_103 . repeat_region 36629 36764 . ? . description=trf scaffold_103 . biological_region 36790 36794 0.999 + . logic_name=eponine scaffold_103 . biological_region 36960 36964 0.999 - . logic_name=eponine scaffold_103 . repeat_region 36996 37121 . ? . description=trf scaffold_103 . biological_region 37016 37018 0.999 + . logic_name=eponine scaffold_103 ensembl protein_coding_gene 32860 33768 . - . ID=Phyra72187;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_103000002;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 32860 33768 . - . ID=Phyra72187;Parent=Phyra72187;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 32860 33768 . - 0 ID=Phyra72187;Parent=Phyra72187;rank=1 scaffold_103 . exon 32860 33768 . - . ID=Phyra72187.1;Parent=Phyra72187;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 34526 36210 . + . ID=Phyra84080;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000011;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 34526 36210 . + . ID=Phyra84080;Parent=Phyra84080;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 34526 34789 . + 0 ID=Phyra84080;Parent=Phyra84080;rank=1 scaffold_103 . exon 34526 34789 . + . ID=Phyra84080.1;Parent=Phyra84080;constitutive=1;rank=1 scaffold_103 . CDS 34859 34939 . + 0 ID=Phyra84080;Parent=Phyra84080;rank=2 scaffold_103 . exon 34859 34939 . + . ID=Phyra84080.2;Parent=Phyra84080;constitutive=1;rank=2 scaffold_103 . CDS 35221 35475 . + 0 ID=Phyra84080;Parent=Phyra84080;rank=3 scaffold_103 . exon 35221 35475 . + . ID=Phyra84080.3;Parent=Phyra84080;constitutive=1;rank=3 scaffold_103 . CDS 35515 35534 . + 0 ID=Phyra84080;Parent=Phyra84080;rank=4 scaffold_103 . exon 35515 35534 . + . ID=Phyra84080.4;Parent=Phyra84080;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_103 . CDS 35597 35851 . + 0 ID=Phyra84080;Parent=Phyra84080;rank=5 scaffold_103 . exon 35597 35851 . + . ID=Phyra84080.5;Parent=Phyra84080;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_103 . CDS 35922 36210 . + 0 ID=Phyra84080;Parent=Phyra84080;rank=6 scaffold_103 . exon 35922 36210 . + . ID=Phyra84080.6;Parent=Phyra84080;constitutive=1;ensembl_phase=2;rank=6 scaffold_103 ensembl protein_coding_gene 36521 40288 . - . ID=Phyra84081;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000012;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 36521 40288 . - . ID=Phyra84081;Parent=Phyra84081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 36521 40288 . - 0 ID=Phyra84081;Parent=Phyra84081;rank=1 scaffold_103 . exon 36521 40288 . - . ID=Phyra84081.1;Parent=Phyra84081;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 41821 43692 . + . ID=Phyra84082;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000013;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 41821 43692 . + . ID=Phyra84082;Parent=Phyra84082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 41821 41837 . + 0 ID=Phyra84082;Parent=Phyra84082;rank=1 scaffold_103 . exon 41821 41837 . + . ID=Phyra84082.1;Parent=Phyra84082;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 . CDS 41967 43692 . + 0 ID=Phyra84082;Parent=Phyra84082;rank=2 scaffold_103 . exon 41967 43692 . + . ID=Phyra84082.2;Parent=Phyra84082;constitutive=1;ensembl_phase=2;rank=2 scaffold_103 ensembl protein_coding_gene 43767 45998 . - . ID=Phyra84083;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000014;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 43767 45998 . - . ID=Phyra84083;Parent=Phyra84083;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 43767 45998 . - 0 ID=Phyra84083;Parent=Phyra84083;rank=1 scaffold_103 . exon 43767 45998 . - . ID=Phyra84083.1;Parent=Phyra84083;constitutive=1;rank=1 scaffold_103 . repeat_region 50469 50488 . ? . description=trf scaffold_103 . repeat_region 50469 50488 . ? . description=dust scaffold_103 . biological_region 51267 51269 0.999 - . logic_name=eponine scaffold_103 . repeat_region 51393 51445 . ? . description=dust scaffold_103 . repeat_region 51395 51435 . ? . description=trf scaffold_103 . repeat_region 51395 51445 . + . description=(CAG)n scaffold_103 . repeat_region 55268 55290 . ? . description=trf scaffold_103 . repeat_region 55532 55540 . ? . description=dust scaffold_103 . repeat_region 55804 55856 . ? . description=trf scaffold_103 . biological_region 55934 55936 0.999 + . logic_name=eponine scaffold_103 ensembl protein_coding_gene 52043 52576 . + . ID=Phyra39232;biotype=protein_coding;external_name=gwEuk.103.8.1;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 52043 52576 . + . ID=Phyra39232;Parent=Phyra39232;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 52043 52155 . + 0 ID=Phyra39232;Parent=Phyra39232;rank=1 scaffold_103 . exon 52043 52155 . + . ID=Phyra39232.1;Parent=Phyra39232;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 . CDS 52214 52312 . + 0 ID=Phyra39232;Parent=Phyra39232;rank=2 scaffold_103 . exon 52214 52312 . + . ID=Phyra39232.2;Parent=Phyra39232;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_103 . CDS 52372 52576 . + 0 ID=Phyra39232;Parent=Phyra39232;rank=3 scaffold_103 . exon 52372 52576 . + . ID=Phyra39232.3;Parent=Phyra39232;constitutive=1;ensembl_phase=2;rank=3 scaffold_103 ensembl protein_coding_gene 50206 51503 . + . ID=Phyra84084;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000015;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 50206 51503 . + . ID=Phyra84084;Parent=Phyra84084;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 50206 50208 . + 0 ID=Phyra84084;Parent=Phyra84084;rank=1 scaffold_103 . exon 50206 50208 . + . ID=Phyra84084.1;Parent=Phyra84084;constitutive=1;rank=1 scaffold_103 . CDS 50430 50459 . + 0 ID=Phyra84084;Parent=Phyra84084;rank=2 scaffold_103 . exon 50430 50459 . + . ID=Phyra84084.2;Parent=Phyra84084;constitutive=1;rank=2 scaffold_103 . CDS 50514 51503 . + 0 ID=Phyra84084;Parent=Phyra84084;rank=3 scaffold_103 . exon 50514 51503 . + . ID=Phyra84084.3;Parent=Phyra84084;constitutive=1;rank=3 scaffold_103 ensembl protein_coding_gene 53199 54554 . + . ID=Phyra84085;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000016;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 53199 54554 . + . ID=Phyra84085;Parent=Phyra84085;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 53199 54554 . + 0 ID=Phyra84085;Parent=Phyra84085;rank=1 scaffold_103 . exon 53199 54554 . + . ID=Phyra84085.1;Parent=Phyra84085;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 55353 56032 . - . ID=Phyra84086;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000017;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 55353 56032 . - . ID=Phyra84086;Parent=Phyra84086;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 55353 55488 . - 0 ID=Phyra84086;Parent=Phyra84086;rank=2 scaffold_103 . exon 55353 55488 . - . ID=Phyra84086.2;Parent=Phyra84086;constitutive=1;ensembl_phase=2;rank=2 scaffold_103 . CDS 55554 56032 . - 0 ID=Phyra84086;Parent=Phyra84086;rank=1 scaffold_103 . exon 55554 56032 . - . ID=Phyra84086.1;Parent=Phyra84086;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 ensembl protein_coding_gene 57121 59361 . + . ID=Phyra84087;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000018;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 57121 59361 . + . ID=Phyra84087;Parent=Phyra84087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 57121 59361 . + 0 ID=Phyra84087;Parent=Phyra84087;rank=1 scaffold_103 . exon 57121 59361 . + . ID=Phyra84087.1;Parent=Phyra84087;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 59621 61038 . + . ID=Phyra84088;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000019;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 59621 61038 . + . ID=Phyra84088;Parent=Phyra84088;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 59621 60130 . + 0 ID=Phyra84088;Parent=Phyra84088;rank=1 scaffold_103 . exon 59621 60130 . + . ID=Phyra84088.1;Parent=Phyra84088;constitutive=1;rank=1 scaffold_103 . CDS 60208 60366 . + 0 ID=Phyra84088;Parent=Phyra84088;rank=2 scaffold_103 . exon 60208 60366 . + . ID=Phyra84088.2;Parent=Phyra84088;constitutive=1;rank=2 scaffold_103 . CDS 60442 60771 . + 0 ID=Phyra84088;Parent=Phyra84088;rank=3 scaffold_103 . exon 60442 60771 . + . ID=Phyra84088.3;Parent=Phyra84088;constitutive=1;rank=3 scaffold_103 . CDS 60853 61038 . + 0 ID=Phyra84088;Parent=Phyra84088;rank=4 scaffold_103 . exon 60853 61038 . + . ID=Phyra84088.4;Parent=Phyra84088;constitutive=1;rank=4 scaffold_103 ensembl protein_coding_gene 61297 61834 . + . ID=Phyra84089;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000020;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 61297 61834 . + . ID=Phyra84089;Parent=Phyra84089;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 61297 61375 . + 0 ID=Phyra84089;Parent=Phyra84089;rank=1 scaffold_103 . exon 61297 61375 . + . ID=Phyra84089.1;Parent=Phyra84089;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_103 . CDS 61435 61538 . + 0 ID=Phyra84089;Parent=Phyra84089;rank=2 scaffold_103 . exon 61435 61538 . + . ID=Phyra84089.2;Parent=Phyra84089;constitutive=1;ensembl_phase=1;rank=2 scaffold_103 . CDS 61611 61672 . + 0 ID=Phyra84089;Parent=Phyra84089;rank=3 scaffold_103 . exon 61611 61672 . + . ID=Phyra84089.3;Parent=Phyra84089;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_103 . CDS 61738 61834 . + 0 ID=Phyra84089;Parent=Phyra84089;rank=4 scaffold_103 . exon 61738 61834 . + . ID=Phyra84089.4;Parent=Phyra84089;constitutive=1;ensembl_phase=2;rank=4 scaffold_103 ensembl protein_coding_gene 63174 66074 . + . ID=Phyra84090;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000021;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 63174 66074 . + . ID=Phyra84090;Parent=Phyra84090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 63174 63446 . + 0 ID=Phyra84090;Parent=Phyra84090;rank=1 scaffold_103 . exon 63174 63446 . + . ID=Phyra84090.1;Parent=Phyra84090;constitutive=1;rank=1 scaffold_103 . CDS 63669 64112 . + 0 ID=Phyra84090;Parent=Phyra84090;rank=2 scaffold_103 . exon 63669 64112 . + . ID=Phyra84090.2;Parent=Phyra84090;constitutive=1;rank=2 scaffold_103 . CDS 64197 66074 . + 0 ID=Phyra84090;Parent=Phyra84090;rank=3 scaffold_103 . exon 64197 66074 . + . ID=Phyra84090.3;Parent=Phyra84090;constitutive=1;rank=3 scaffold_103 ensembl protein_coding_gene 66773 67501 . - . ID=Phyra84091;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000022;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 66773 67501 . - . ID=Phyra84091;Parent=Phyra84091;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 66773 67125 . - 0 ID=Phyra84091;Parent=Phyra84091;rank=3 scaffold_103 . exon 66773 67125 . - . ID=Phyra84091.3;Parent=Phyra84091;constitutive=1;ensembl_phase=1;rank=3 scaffold_103 . CDS 67212 67318 . - 0 ID=Phyra84091;Parent=Phyra84091;rank=2 scaffold_103 . exon 67212 67318 . - . ID=Phyra84091.2;Parent=Phyra84091;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_103 . CDS 67431 67501 . - 0 ID=Phyra84091;Parent=Phyra84091;rank=1 scaffold_103 . exon 67431 67501 . - . ID=Phyra84091.1;Parent=Phyra84091;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 ensembl protein_coding_gene 67805 68608 . - . ID=Phyra84092;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000023;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 67805 68608 . - . ID=Phyra84092;Parent=Phyra84092;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 67805 68608 . - 0 ID=Phyra84092;Parent=Phyra84092;rank=1 scaffold_103 . exon 67805 68608 . - . ID=Phyra84092.1;Parent=Phyra84092;constitutive=1;rank=1 scaffold_103 . biological_region 70528 70529 0.999 + . logic_name=eponine scaffold_103 . biological_region 73075 73079 0.999 + . logic_name=eponine scaffold_103 . biological_region 73694 73699 0.999 - . logic_name=eponine scaffold_103 . biological_region 73870 73875 0.999 - . logic_name=eponine scaffold_103 . biological_region 74310 74311 0.999 - . logic_name=eponine scaffold_103 . biological_region 77015 77020 0.999 - . logic_name=eponine scaffold_103 . repeat_region 78903 78911 . ? . description=dust scaffold_103 ensembl protein_coding_gene 69664 70755 . - . ID=Phyra84093;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000024;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 69664 70755 . - . ID=Phyra84093;Parent=Phyra84093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 69664 70755 . - 0 ID=Phyra84093;Parent=Phyra84093;rank=1 scaffold_103 . exon 69664 70755 . - . ID=Phyra84093.1;Parent=Phyra84093;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 72601 74523 . + . ID=Phyra84094;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000025;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 72601 74523 . + . ID=Phyra84094;Parent=Phyra84094;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 72601 74523 . + 0 ID=Phyra84094;Parent=Phyra84094;rank=1 scaffold_103 . exon 72601 74523 . + . ID=Phyra84094.1;Parent=Phyra84094;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 75262 77082 . + . ID=Phyra84095;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000026;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 75262 77082 . + . ID=Phyra84095;Parent=Phyra84095;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 75262 75286 . + 0 ID=Phyra84095;Parent=Phyra84095;rank=1 scaffold_103 . exon 75262 75286 . + . ID=Phyra84095.1;Parent=Phyra84095;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_103 . CDS 75371 75775 . + 0 ID=Phyra84095;Parent=Phyra84095;rank=2 scaffold_103 . exon 75371 75775 . + . ID=Phyra84095.2;Parent=Phyra84095;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_103 . CDS 75846 76479 . + 0 ID=Phyra84095;Parent=Phyra84095;rank=3 scaffold_103 . exon 75846 76479 . + . ID=Phyra84095.3;Parent=Phyra84095;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_103 . CDS 76761 77082 . + 0 ID=Phyra84095;Parent=Phyra84095;rank=4 scaffold_103 . exon 76761 77082 . + . ID=Phyra84095.4;Parent=Phyra84095;constitutive=1;ensembl_phase=2;rank=4 scaffold_103 . repeat_region 86498 86582 . ? . description=trf scaffold_103 . repeat_region 89422 100529 . ? . description=dust scaffold_103 . repeat_region 100864 101702 . + . description=GypsyPi-1c_I-int scaffold_103 . repeat_region 102604 102961 . + . description=GypsyPi-1c_I-int scaffold_103 . repeat_region 109170 109192 . ? . description=trf scaffold_103 . repeat_region 110176 110183 . ? . description=dust scaffold_103 . biological_region 112306 112309 0.999 - . logic_name=eponine scaffold_103 . biological_region 113304 113305 0.999 + . logic_name=eponine scaffold_103 . biological_region 113377 113379 0.999 - . logic_name=eponine scaffold_103 . repeat_region 117488 117538 . ? . description=dust scaffold_103 . repeat_region 117619 117627 . ? . description=dust scaffold_103 . biological_region 118361 118361 0.999 + . logic_name=eponine scaffold_103 . biological_region 118378 118380 0.999 + . logic_name=eponine scaffold_103 . biological_region 118400 118403 0.999 + . logic_name=eponine scaffold_103 ensembl protein_coding_gene 111773 114235 . - . ID=Phyra84096;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000027;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 111773 114235 . - . ID=Phyra84096;Parent=Phyra84096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 111773 114235 . - 0 ID=Phyra84096;Parent=Phyra84096;rank=1 scaffold_103 . exon 111773 114235 . - . ID=Phyra84096.1;Parent=Phyra84096;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 114436 115951 . + . ID=Phyra84097;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000028;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 114436 115951 . + . ID=Phyra84097;Parent=Phyra84097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 114436 114637 . + 0 ID=Phyra84097;Parent=Phyra84097;rank=1 scaffold_103 . exon 114436 114637 . + . ID=Phyra84097.1;Parent=Phyra84097;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_103 . CDS 114681 114916 . + 0 ID=Phyra84097;Parent=Phyra84097;rank=2 scaffold_103 . exon 114681 114916 . + . ID=Phyra84097.2;Parent=Phyra84097;constitutive=1;ensembl_phase=1;rank=2 scaffold_103 . CDS 114977 115039 . + 0 ID=Phyra84097;Parent=Phyra84097;rank=3 scaffold_103 . exon 114977 115039 . + . ID=Phyra84097.3;Parent=Phyra84097;constitutive=1;rank=3 scaffold_103 . CDS 115106 115613 . + 0 ID=Phyra84097;Parent=Phyra84097;rank=4 scaffold_103 . exon 115106 115613 . + . ID=Phyra84097.4;Parent=Phyra84097;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_103 . CDS 115779 115951 . + 0 ID=Phyra84097;Parent=Phyra84097;rank=5 scaffold_103 . exon 115779 115951 . + . ID=Phyra84097.5;Parent=Phyra84097;constitutive=1;ensembl_phase=1;rank=5 scaffold_103 ensembl protein_coding_gene 116143 118494 . - . ID=Phyra84098;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000029;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 116143 118494 . - . ID=Phyra84098;Parent=Phyra84098;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 116143 118494 . - 0 ID=Phyra84098;Parent=Phyra84098;rank=1 scaffold_103 . exon 116143 118494 . - . ID=Phyra84098.1;Parent=Phyra84098;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 119111 120144 . + . ID=Phyra84099;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000030;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 119111 120144 . + . ID=Phyra84099;Parent=Phyra84099;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 119111 119113 . + 0 ID=Phyra84099;Parent=Phyra84099;rank=1 scaffold_103 . exon 119111 119113 . + . ID=Phyra84099.1;Parent=Phyra84099;constitutive=1;rank=1 scaffold_103 . CDS 119181 119725 . + 0 ID=Phyra84099;Parent=Phyra84099;rank=2 scaffold_103 . exon 119181 119725 . + . ID=Phyra84099.2;Parent=Phyra84099;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_103 . CDS 119793 120144 . + 0 ID=Phyra84099;Parent=Phyra84099;rank=3 scaffold_103 . repeat_region 121355 121386 . ? . description=trf scaffold_103 . repeat_region 121654 121681 . ? . description=trf scaffold_103 . repeat_region 128596 128615 . ? . description=trf scaffold_103 . exon 119793 120144 . + . ID=Phyra84099.3;Parent=Phyra84099;constitutive=1;ensembl_phase=2;rank=3 scaffold_103 ensembl protein_coding_gene 120372 121160 . - . ID=Phyra84100;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000031;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 120372 121160 . - . ID=Phyra84100;Parent=Phyra84100;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 120372 120455 . - 0 ID=Phyra84100;Parent=Phyra84100;rank=5 scaffold_103 . exon 120372 120455 . - . ID=Phyra84100.5;Parent=Phyra84100;constitutive=1;rank=5 scaffold_103 . CDS 120512 120719 . - 0 ID=Phyra84100;Parent=Phyra84100;rank=4 scaffold_103 . exon 120512 120719 . - . ID=Phyra84100.4;Parent=Phyra84100;constitutive=1;ensembl_phase=2;rank=4 scaffold_103 . CDS 120784 120843 . - 0 ID=Phyra84100;Parent=Phyra84100;rank=3 scaffold_103 . exon 120784 120843 . - . ID=Phyra84100.3;Parent=Phyra84100;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_103 . CDS 120910 120959 . - 0 ID=Phyra84100;Parent=Phyra84100;rank=2 scaffold_103 . exon 120910 120959 . - . ID=Phyra84100.2;Parent=Phyra84100;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_103 . CDS 121026 121160 . - 0 ID=Phyra84100;Parent=Phyra84100;rank=1 scaffold_103 . exon 121026 121160 . - . ID=Phyra84100.1;Parent=Phyra84100;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 121303 122718 . + . ID=Phyra84101;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000032;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 121303 122718 . + . ID=Phyra84101;Parent=Phyra84101;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 121303 121430 . + 0 ID=Phyra84101;Parent=Phyra84101;rank=1 scaffold_103 . exon 121303 121430 . + . ID=Phyra84101.1;Parent=Phyra84101;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 . CDS 121484 121643 . + 0 ID=Phyra84101;Parent=Phyra84101;rank=2 scaffold_103 . exon 121484 121643 . + . ID=Phyra84101.2;Parent=Phyra84101;constitutive=1;ensembl_phase=2;rank=2 scaffold_103 . CDS 121855 122718 . + 0 ID=Phyra84101;Parent=Phyra84101;rank=3 scaffold_103 . exon 121855 122718 . + . ID=Phyra84101.3;Parent=Phyra84101;constitutive=1;rank=3 scaffold_103 ensembl protein_coding_gene 123320 124029 . - . ID=Phyra84102;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000033;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 123320 124029 . - . ID=Phyra84102;Parent=Phyra84102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 123320 123602 . - 0 ID=Phyra84102;Parent=Phyra84102;rank=2 scaffold_103 . exon 123320 123602 . - . ID=Phyra84102.2;Parent=Phyra84102;constitutive=1;ensembl_phase=2;rank=2 scaffold_103 . CDS 123671 124029 . - 0 ID=Phyra84102;Parent=Phyra84102;rank=1 scaffold_103 . exon 123671 124029 . - . ID=Phyra84102.1;Parent=Phyra84102;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 ensembl protein_coding_gene 126653 128014 . - . ID=Phyra84104;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000035;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 126653 128014 . - . ID=Phyra84104;Parent=Phyra84104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 126653 128014 . - 0 ID=Phyra84104;Parent=Phyra84104;rank=1 scaffold_103 . exon 126653 128014 . - . ID=Phyra84104.1;Parent=Phyra84104;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 124198 126199 . + . ID=Phyra96761;biotype=protein_coding;external_name=C_scaffold_103000007;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 124198 126199 . + . ID=Phyra96761;Parent=Phyra96761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 124198 124624 . + 0 ID=Phyra96761;Parent=Phyra96761;rank=1 scaffold_103 . exon 124198 124624 . + . ID=Phyra96761.1;Parent=Phyra96761;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_103 . CDS 124862 125029 . + 0 ID=Phyra96761;Parent=Phyra96761;rank=2 scaffold_103 . exon 124862 125029 . + . ID=Phyra96761.2;Parent=Phyra96761;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_103 . CDS 125091 125249 . + 0 ID=Phyra96761;Parent=Phyra96761;rank=3 scaffold_103 . exon 125091 125249 . + . ID=Phyra96761.3;Parent=Phyra96761;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_103 . CDS 125271 126005 . + 0 ID=Phyra96761;Parent=Phyra96761;rank=4 scaffold_103 . exon 125271 126005 . + . ID=Phyra96761.4;Parent=Phyra96761;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_103 . CDS 126045 126199 . + 0 ID=Phyra96761;Parent=Phyra96761;rank=5 scaffold_103 . exon 126045 126199 . + . ID=Phyra96761.5;Parent=Phyra96761;constitutive=1;ensembl_phase=1;rank=5 scaffold_103 . biological_region 129936 129939 0.999 + . logic_name=eponine scaffold_103 . biological_region 129965 129972 0.999 + . logic_name=eponine scaffold_103 . biological_region 130006 130008 0.999 + . logic_name=eponine scaffold_103 . biological_region 130032 130034 0.999 - . logic_name=eponine scaffold_103 . biological_region 132275 132282 0.999 - . logic_name=eponine scaffold_103 . biological_region 134263 134265 0.999 + . logic_name=eponine scaffold_103 . repeat_region 135075 135091 . ? . description=dust scaffold_103 ensembl protein_coding_gene 130443 132881 . + . ID=Phyra72188;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_103000003;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 130443 132881 . + . ID=Phyra72188;Parent=Phyra72188;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 130443 130497 . + 0 ID=Phyra72188;Parent=Phyra72188;rank=1 scaffold_103 . exon 130443 130497 . + . ID=Phyra72188.1;Parent=Phyra72188;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_103 . CDS 130588 132881 . + 0 ID=Phyra72188;Parent=Phyra72188;rank=2 scaffold_103 . exon 130588 132881 . + . ID=Phyra72188.2;Parent=Phyra72188;constitutive=1;ensembl_phase=1;rank=2 scaffold_103 ensembl protein_coding_gene 129823 130287 . + . ID=Phyra84105;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000036;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 129823 130287 . + . ID=Phyra84105;Parent=Phyra84105;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 129823 130287 . + 0 ID=Phyra84105;Parent=Phyra84105;rank=1 scaffold_103 . exon 129823 130287 . + . ID=Phyra84105.1;Parent=Phyra84105;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 135247 135879 . - . ID=Phyra84109;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000040;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 135247 135879 . - . ID=Phyra84109;Parent=Phyra84109;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 135247 135879 . - 0 ID=Phyra84109;Parent=Phyra84109;rank=1 scaffold_103 . exon 135247 135879 . - . ID=Phyra84109.1;Parent=Phyra84109;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 136298 138106 . + . ID=Phyra84110;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000041;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 136298 138106 . + . ID=Phyra84110;Parent=Phyra84110;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 136298 136604 . + 0 ID=Phyra84110;Parent=Phyra84110;rank=1 scaffold_103 . exon 136298 136604 . + . ID=Phyra84110.1;Parent=Phyra84110;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_103 . CDS 136671 138106 . + 0 ID=Phyra84110;Parent=Phyra84110;rank=2 scaffold_103 . exon 136671 138106 . + . ID=Phyra84110.2;Parent=Phyra84110;constitutive=1;ensembl_phase=1;rank=2 scaffold_103 ensembl protein_coding_gene 133299 134906 . - . ID=Phyra96762;biotype=protein_coding;external_name=C_scaffold_103000008;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 133299 134906 . - . ID=Phyra96762;Parent=Phyra96762;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 133299 133329 . - 0 ID=Phyra96762;Parent=Phyra96762;rank=7 scaffold_103 . exon 133299 133329 . - . ID=Phyra96762.7;Parent=Phyra96762;constitutive=1;ensembl_phase=2;rank=7 scaffold_103 . CDS 133394 133878 . - 0 ID=Phyra96762;Parent=Phyra96762;rank=6 scaffold_103 . exon 133394 133878 . - . ID=Phyra96762.6;Parent=Phyra96762;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_103 . CDS 133909 133976 . - 0 ID=Phyra96762;Parent=Phyra96762;rank=5 scaffold_103 . exon 133909 133976 . - . ID=Phyra96762.5;Parent=Phyra96762;constitutive=1;ensembl_phase=1;rank=5 scaffold_103 . CDS 134016 134116 . - 0 ID=Phyra96762;Parent=Phyra96762;rank=4 scaffold_103 . exon 134016 134116 . - . ID=Phyra96762.4;Parent=Phyra96762;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_103 . CDS 134150 134576 . - 0 ID=Phyra96762;Parent=Phyra96762;rank=3 scaffold_103 . exon 134150 134576 . - . ID=Phyra96762.3;Parent=Phyra96762;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_103 . CDS 134664 134724 . - 0 ID=Phyra96762;Parent=Phyra96762;rank=2 scaffold_103 . exon 134664 134724 . - . ID=Phyra96762.2;Parent=Phyra96762;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_103 . CDS 134802 134906 . - 0 ID=Phyra96762;Parent=Phyra96762;rank=1 scaffold_103 . exon 134802 134906 . - . ID=Phyra96762.1;Parent=Phyra96762;constitutive=1;rank=1 scaffold_103 . repeat_region 141231 141348 . + . description=(TCG)n scaffold_103 . repeat_region 141242 141316 . ? . description=trf scaffold_103 ensembl protein_coding_gene 141391 141874 . - . ID=Phyra39250;biotype=protein_coding;external_name=gwEuk.103.26.1;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 141391 141874 . - . ID=Phyra39250;Parent=Phyra39250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 141391 141538 . - 0 ID=Phyra39250;Parent=Phyra39250;rank=2 scaffold_103 . exon 141391 141538 . - . ID=Phyra39250.2;Parent=Phyra39250;constitutive=1;ensembl_phase=2;rank=2 scaffold_103 . CDS 141597 141874 . - 0 ID=Phyra39250;Parent=Phyra39250;rank=1 scaffold_103 . exon 141597 141874 . - . ID=Phyra39250.1;Parent=Phyra39250;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 ensembl protein_coding_gene 142745 143599 . - . ID=Phyra39252;biotype=protein_coding;external_name=gwEuk.103.28.1;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 142745 143599 . - . ID=Phyra39252;Parent=Phyra39252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 142745 143599 . - 0 ID=Phyra39252;Parent=Phyra39252;rank=1 scaffold_103 . exon 142745 143599 . - . ID=Phyra39252.1;Parent=Phyra39252;constitutive=1;rank=1 scaffold_103 . repeat_region 144951 152175 . ? . description=dust scaffold_103 . repeat_region 152190 152456 . - . description=GypsyPi-1c_LTR scaffold_103 . repeat_region 153521 153597 . - . description=GypsyPi-1c_I-int scaffold_103 . repeat_region 153725 153806 . - . description=GypsyPi-1c_I-int scaffold_103 . repeat_region 153966 154160 . - . description=GypsyPi-1c_I-int scaffold_103 . repeat_region 154423 154777 . - . description=GypsyPi-1c_I-int scaffold_103 . repeat_region 154821 155571 . ? . description=dust scaffold_103 . repeat_region 155572 156674 . - . description=GypsyPi-1c_I-int scaffold_103 . biological_region 155734 155737 0.999 - . logic_name=eponine scaffold_103 . repeat_region 156675 156979 . - . description=GypsyPi-1c_LTR scaffold_103 . biological_region 157408 157410 0.999 + . logic_name=eponine scaffold_103 . biological_region 158824 158825 0.999 + . logic_name=eponine scaffold_103 . repeat_region 158885 158942 . ? . description=dust scaffold_103 ensembl protein_coding_gene 155622 156587 . - . ID=Phyra84112;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_103000043;logic_name=jgi_phyra1 scaffold_103 ensembl transcript 155622 156587 . - . ID=Phyra84112;Parent=Phyra84112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_103 . CDS 155622 156587 . - 0 ID=Phyra84112;Parent=Phyra84112;rank=1 scaffold_103 . exon 155622 156587 . - . ID=Phyra84112.1;Parent=Phyra84112;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_101 1 162262 scaffold_101 . repeat_region 633 657 . ? . description=trf scaffold_101 . repeat_region 1326 1733 . ? . description=dust scaffold_101 . repeat_region 2374 2426 . ? . description=trf scaffold_101 . repeat_region 3082 4187 . ? . description=dust scaffold_101 . repeat_region 4979 20509 . ? . description=dust scaffold_101 . repeat_region 4979 20509 . ? . description=dust scaffold_101 . repeat_region 24246 24270 . ? . description=trf scaffold_101 . repeat_region 26637 26675 . ? . description=trf scaffold_101 . repeat_region 26637 26679 . ? . description=trf scaffold_101 . repeat_region 26637 26679 . ? . description=trf scaffold_101 . repeat_region 26637 26679 . ? . description=dust scaffold_101 . repeat_region 26641 26679 . ? . description=trf scaffold_101 . biological_region 27437 27440 0.999 + . logic_name=eponine scaffold_101 . biological_region 27863 27865 0.999 + . logic_name=eponine scaffold_101 . repeat_region 27874 28059 . ? . description=trf scaffold_101 . repeat_region 28617 28624 . ? . description=dust scaffold_101 ensembl protein_coding_gene 20845 21009 . + . ID=Phyra39119;biotype=protein_coding;external_name=gwEuk.101.2.1;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 20845 21009 . + . ID=Phyra39119;Parent=Phyra39119;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 20845 21009 . + 0 ID=Phyra39119;Parent=Phyra39119;rank=1 scaffold_101 . exon 20845 21009 . + . ID=Phyra39119.1;Parent=Phyra39119;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 27472 28338 . + . ID=Phyra83991;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000001;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 27472 28338 . + . ID=Phyra83991;Parent=Phyra83991;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 27472 28338 . + 0 ID=Phyra83991;Parent=Phyra83991;rank=1 scaffold_101 . exon 27472 28338 . + . ID=Phyra83991.1;Parent=Phyra83991;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 28640 39299 . - . ID=Phyra83992;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000002;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 28640 39299 . - . ID=Phyra83992;Parent=Phyra83992;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 28640 37276 . - 0 ID=Phyra83992;Parent=Phyra83992;rank=3 scaffold_101 . exon 28640 37276 . - . ID=Phyra83992.3;Parent=Phyra83992;constitutive=1;rank=3 scaffold_101 . CDS 37337 37444 . - 0 ID=Phyra83992;Parent=Phyra83992;rank=2 scaffold_101 . exon 37337 37444 . - . ID=Phyra83992.2;Parent=Phyra83992;constitutive=1;rank=2 scaffold_101 . CDS 37524 39299 . - 0 ID=Phyra83992;Parent=Phyra83992;rank=1 scaffold_101 . exon 37524 39299 . - . ID=Phyra83992.1;Parent=Phyra83992;constitutive=1;rank=1 scaffold_101 . biological_region 41338 41338 0.999 + . logic_name=eponine scaffold_101 . biological_region 41415 41415 0.999 - . logic_name=eponine scaffold_101 . repeat_region 42241 42276 . ? . description=trf scaffold_101 . biological_region 42914 42916 0.999 + . logic_name=eponine scaffold_101 . repeat_region 43648 43667 . ? . description=trf scaffold_101 . repeat_region 43648 43667 . ? . description=dust scaffold_101 . repeat_region 44774 44785 . ? . description=dust scaffold_101 . repeat_region 44787 44795 . ? . description=dust scaffold_101 . repeat_region 46119 46128 . ? . description=dust scaffold_101 . repeat_region 47228 47275 . ? . description=trf scaffold_101 . repeat_region 47543 47575 . ? . description=trf scaffold_101 ensembl pseudogene 45024 45424 . + . ID=Phyra39123;biotype=pseudogene;external_name=gwEuk.101.6.1;logic_name=jgi_phyra1 scaffold_101 ensembl pseudogene 45024 45424 . + . ID=Phyra39123;Parent=Phyra39123;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_101 . exon 45024 45424 . + . ID=Phyra39123.1;Parent=Phyra39123;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 ensembl protein_coding_gene 41009 41908 . - . ID=Phyra83993;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000003;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 41009 41908 . - . ID=Phyra83993;Parent=Phyra83993;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 41009 41908 . - 0 ID=Phyra83993;Parent=Phyra83993;rank=1 scaffold_101 . exon 41009 41908 . - . ID=Phyra83993.1;Parent=Phyra83993;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 42820 43374 . + . ID=Phyra83994;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000004;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 42820 43374 . + . ID=Phyra83994;Parent=Phyra83994;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 42820 42848 . + 0 ID=Phyra83994;Parent=Phyra83994;rank=1 scaffold_101 . exon 42820 42848 . + . ID=Phyra83994.1;Parent=Phyra83994;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 . CDS 42888 43374 . + 0 ID=Phyra83994;Parent=Phyra83994;rank=2 scaffold_101 . exon 42888 43374 . + . ID=Phyra83994.2;Parent=Phyra83994;constitutive=1;ensembl_phase=2;rank=2 scaffold_101 ensembl protein_coding_gene 46562 47178 . + . ID=Phyra83995;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000005;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 46562 47178 . + . ID=Phyra83995;Parent=Phyra83995;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 46562 47117 . + 0 ID=Phyra83995;Parent=Phyra83995;rank=1 scaffold_101 . exon 46562 47117 . + . ID=Phyra83995.1;Parent=Phyra83995;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_101 . CDS 47174 47178 . + 0 ID=Phyra83995;Parent=Phyra83995;rank=2 scaffold_101 . exon 47174 47178 . + . ID=Phyra83995.2;Parent=Phyra83995;constitutive=1;ensembl_phase=1;rank=2 scaffold_101 . repeat_region 62467 62516 . ? . description=dust scaffold_101 . biological_region 63960 63963 0.999 + . logic_name=eponine scaffold_101 . repeat_region 66361 66385 . ? . description=trf scaffold_101 ensembl protein_coding_gene 63459 64913 . - . ID=Phyra39127;biotype=protein_coding;external_name=gwEuk.101.10.1;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 63459 64913 . - . ID=Phyra39127;Parent=Phyra39127;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 63459 63521 . - 0 ID=Phyra39127;Parent=Phyra39127;rank=9 scaffold_101 . exon 63459 63521 . - . ID=Phyra39127.9;Parent=Phyra39127;constitutive=1;rank=9 scaffold_101 . CDS 63598 63737 . - 0 ID=Phyra39127;Parent=Phyra39127;rank=8 scaffold_101 . exon 63598 63737 . - . ID=Phyra39127.8;Parent=Phyra39127;constitutive=1;ensembl_phase=1;rank=8 scaffold_101 . CDS 63819 63995 . - 0 ID=Phyra39127;Parent=Phyra39127;rank=7 scaffold_101 . exon 63819 63995 . - . ID=Phyra39127.7;Parent=Phyra39127;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_101 . CDS 64060 64157 . - 0 ID=Phyra39127;Parent=Phyra39127;rank=6 scaffold_101 . exon 64060 64157 . - . ID=Phyra39127.6;Parent=Phyra39127;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_101 . CDS 64216 64265 . - 0 ID=Phyra39127;Parent=Phyra39127;rank=5 scaffold_101 . exon 64216 64265 . - . ID=Phyra39127.5;Parent=Phyra39127;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_101 . CDS 64327 64383 . - 0 ID=Phyra39127;Parent=Phyra39127;rank=4 scaffold_101 . exon 64327 64383 . - . ID=Phyra39127.4;Parent=Phyra39127;constitutive=1;rank=4 scaffold_101 . CDS 64451 64566 . - 0 ID=Phyra39127;Parent=Phyra39127;rank=3 scaffold_101 . exon 64451 64566 . - . ID=Phyra39127.3;Parent=Phyra39127;constitutive=1;ensembl_phase=1;rank=3 scaffold_101 . CDS 64639 64734 . - 0 ID=Phyra39127;Parent=Phyra39127;rank=2 scaffold_101 . exon 64639 64734 . - . ID=Phyra39127.2;Parent=Phyra39127;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_101 . CDS 64817 64913 . - 0 ID=Phyra39127;Parent=Phyra39127;rank=1 scaffold_101 . exon 64817 64913 . - . ID=Phyra39127.1;Parent=Phyra39127;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_101 ensembl protein_coding_gene 58994 63182 . + . ID=Phyra83996;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000006;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 58994 63182 . + . ID=Phyra83996;Parent=Phyra83996;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 58994 59573 . + 0 ID=Phyra83996;Parent=Phyra83996;rank=1 scaffold_101 . exon 58994 59573 . + . ID=Phyra83996.1;Parent=Phyra83996;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_101 . CDS 59967 61638 . + 0 ID=Phyra83996;Parent=Phyra83996;rank=2 scaffold_101 . exon 59967 61638 . + . ID=Phyra83996.2;Parent=Phyra83996;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_101 . CDS 61951 61984 . + 0 ID=Phyra83996;Parent=Phyra83996;rank=3 scaffold_101 . exon 61951 61984 . + . ID=Phyra83996.3;Parent=Phyra83996;constitutive=1;ensembl_phase=2;rank=3 scaffold_101 . CDS 62052 62267 . + 0 ID=Phyra83996;Parent=Phyra83996;rank=4 scaffold_101 . exon 62052 62267 . + . ID=Phyra83996.4;Parent=Phyra83996;constitutive=1;rank=4 scaffold_101 . CDS 62341 62442 . + 0 ID=Phyra83996;Parent=Phyra83996;rank=5 scaffold_101 . exon 62341 62442 . + . ID=Phyra83996.5;Parent=Phyra83996;constitutive=1;rank=5 scaffold_101 . CDS 62525 62764 . + 0 ID=Phyra83996;Parent=Phyra83996;rank=6 scaffold_101 . exon 62525 62764 . + . ID=Phyra83996.6;Parent=Phyra83996;constitutive=1;rank=6 scaffold_101 . CDS 62838 63182 . + 0 ID=Phyra83996;Parent=Phyra83996;rank=7 scaffold_101 . exon 62838 63182 . + . ID=Phyra83996.7;Parent=Phyra83996;constitutive=1;rank=7 scaffold_101 ensembl protein_coding_gene 65757 66134 . - . ID=Phyra83997;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000007;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 65757 66134 . - . ID=Phyra83997;Parent=Phyra83997;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 65757 65914 . - 0 ID=Phyra83997;Parent=Phyra83997;rank=2 scaffold_101 . exon 65757 65914 . - . ID=Phyra83997.2;Parent=Phyra83997;constitutive=1;ensembl_phase=1;rank=2 scaffold_101 . CDS 65975 66134 . - 0 ID=Phyra83997;Parent=Phyra83997;rank=1 scaffold_101 . exon 65975 66134 . - . ID=Phyra83997.1;Parent=Phyra83997;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_101 ensembl protein_coding_gene 66251 67912 . - . ID=Phyra83998;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000008;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 66251 67912 . - . ID=Phyra83998;Parent=Phyra83998;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 66251 66631 . - 0 ID=Phyra83998;Parent=Phyra83998;rank=6 scaffold_101 . exon 66251 66631 . - . ID=Phyra83998.6;Parent=Phyra83998;constitutive=1;rank=6 scaffold_101 . CDS 66709 67013 . - 0 ID=Phyra83998;Parent=Phyra83998;rank=5 scaffold_101 . exon 66709 67013 . - . ID=Phyra83998.5;Parent=Phyra83998;constitutive=1;ensembl_phase=1;rank=5 scaffold_101 . CDS 67074 67293 . - 0 ID=Phyra83998;Parent=Phyra83998;rank=4 scaffold_101 . CDS 67361 67507 . - 0 ID=Phyra83998;Parent=Phyra83998;rank=3 scaffold_101 . CDS 67528 67751 . - 0 ID=Phyra83998;Parent=Phyra83998;rank=2 scaffold_101 . CDS 67831 67912 . - 0 ID=Phyra83998;Parent=Phyra83998;rank=1 scaffold_101 . exon 67074 67293 . - . ID=Phyra83998.4;Parent=Phyra83998;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_101 . exon 67361 67507 . - . ID=Phyra83998.3;Parent=Phyra83998;constitutive=1;rank=3 scaffold_101 . exon 67528 67751 . - . ID=Phyra83998.2;Parent=Phyra83998;constitutive=1;ensembl_phase=1;rank=2 scaffold_101 . exon 67831 67912 . - . ID=Phyra83998.1;Parent=Phyra83998;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_101 ensembl protein_coding_gene 70442 76456 . + . ID=Phyra83999;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000009;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 70442 76456 . + . ID=Phyra83999;Parent=Phyra83999;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 70442 70493 . + 0 ID=Phyra83999;Parent=Phyra83999;rank=1 scaffold_101 . exon 70442 70493 . + . ID=Phyra83999.1;Parent=Phyra83999;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_101 . CDS 70657 70761 . + 0 ID=Phyra83999;Parent=Phyra83999;rank=2 scaffold_101 . exon 70657 70761 . + . ID=Phyra83999.2;Parent=Phyra83999;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_101 . CDS 70836 76456 . + 0 ID=Phyra83999;Parent=Phyra83999;rank=3 scaffold_101 . exon 70836 76456 . + . ID=Phyra83999.3;Parent=Phyra83999;constitutive=1;ensembl_phase=1;rank=3 scaffold_101 . biological_region 78257 78259 0.999 - . logic_name=eponine scaffold_101 . biological_region 79380 79382 0.999 - . logic_name=eponine scaffold_101 . biological_region 79401 79402 0.999 - . logic_name=eponine scaffold_101 . repeat_region 79637 79777 . ? . description=dust scaffold_101 . biological_region 80885 80888 0.999 - . logic_name=eponine scaffold_101 . repeat_region 80940 81371 . ? . description=dust scaffold_101 . biological_region 83156 83156 0.999 - . logic_name=eponine scaffold_101 . repeat_region 83261 83926 . ? . description=dust scaffold_101 . biological_region 84789 84792 0.999 - . logic_name=eponine scaffold_101 . repeat_region 85180 85198 . ? . description=dust scaffold_101 ensembl protein_coding_gene 79068 79636 . - . ID=Phyra39134;biotype=protein_coding;external_name=gwEuk.101.17.1;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 79068 79636 . - . ID=Phyra39134;Parent=Phyra39134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 79068 79211 . - 0 ID=Phyra39134;Parent=Phyra39134;rank=2 scaffold_101 . exon 79068 79211 . - . ID=Phyra39134.2;Parent=Phyra39134;constitutive=1;rank=2 scaffold_101 . CDS 79271 79636 . - 0 ID=Phyra39134;Parent=Phyra39134;rank=1 scaffold_101 . exon 79271 79636 . - . ID=Phyra39134.1;Parent=Phyra39134;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 77319 78699 . + . ID=Phyra72179;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_101000001;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 77319 78699 . + . ID=Phyra72179;Parent=Phyra72179;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 77319 77754 . + 0 ID=Phyra72179;Parent=Phyra72179;rank=1 scaffold_101 . exon 77319 77754 . + . ID=Phyra72179.1;Parent=Phyra72179;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_101 . CDS 77822 78288 . + 0 ID=Phyra72179;Parent=Phyra72179;rank=2 scaffold_101 . exon 77822 78288 . + . ID=Phyra72179.2;Parent=Phyra72179;constitutive=1;ensembl_phase=1;rank=2 scaffold_101 . CDS 78367 78432 . + 0 ID=Phyra72179;Parent=Phyra72179;rank=3 scaffold_101 . exon 78367 78432 . + . ID=Phyra72179.3;Parent=Phyra72179;constitutive=1;rank=3 scaffold_101 . CDS 78494 78588 . + 0 ID=Phyra72179;Parent=Phyra72179;rank=4 scaffold_101 . exon 78494 78588 . + . ID=Phyra72179.4;Parent=Phyra72179;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_101 . CDS 78660 78699 . + 0 ID=Phyra72179;Parent=Phyra72179;rank=5 scaffold_101 . exon 78660 78699 . + . ID=Phyra72179.5;Parent=Phyra72179;constitutive=1;ensembl_phase=2;rank=5 scaffold_101 ensembl protein_coding_gene 82919 84840 . - . ID=Phyra84002;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000012;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 82919 84840 . - . ID=Phyra84002;Parent=Phyra84002;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 82919 83200 . - 0 ID=Phyra84002;Parent=Phyra84002;rank=3 scaffold_101 . exon 82919 83200 . - . ID=Phyra84002.3;Parent=Phyra84002;constitutive=1;rank=3 scaffold_101 . CDS 84495 84620 . - 0 ID=Phyra84002;Parent=Phyra84002;rank=2 scaffold_101 . exon 84495 84620 . - . ID=Phyra84002.2;Parent=Phyra84002;constitutive=1;rank=2 scaffold_101 . CDS 84700 84840 . - 0 ID=Phyra84002;Parent=Phyra84002;rank=1 scaffold_101 . exon 84700 84840 . - . ID=Phyra84002.1;Parent=Phyra84002;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 85808 86360 . + . ID=Phyra84003;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000013;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 85808 86360 . + . ID=Phyra84003;Parent=Phyra84003;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 85808 85899 . + 0 ID=Phyra84003;Parent=Phyra84003;rank=1 scaffold_101 . exon 85808 85899 . + . ID=Phyra84003.1;Parent=Phyra84003;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 . CDS 85962 86232 . + 0 ID=Phyra84003;Parent=Phyra84003;rank=2 scaffold_101 . CDS 86346 86360 . + 0 ID=Phyra84003;Parent=Phyra84003;rank=3 scaffold_101 . repeat_region 92111 92146 . ? . description=trf scaffold_101 . exon 85962 86232 . + . ID=Phyra84003.2;Parent=Phyra84003;constitutive=1;ensembl_phase=2;rank=2 scaffold_101 . exon 86346 86360 . + . ID=Phyra84003.3;Parent=Phyra84003;constitutive=1;rank=3 scaffold_101 ensembl protein_coding_gene 86731 87877 . - . ID=Phyra84004;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000014;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 86731 87877 . - . ID=Phyra84004;Parent=Phyra84004;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 86731 87350 . - 0 ID=Phyra84004;Parent=Phyra84004;rank=3 scaffold_101 . exon 86731 87350 . - . ID=Phyra84004.3;Parent=Phyra84004;constitutive=1;ensembl_phase=1;rank=3 scaffold_101 . CDS 87432 87559 . - 0 ID=Phyra84004;Parent=Phyra84004;rank=2 scaffold_101 . exon 87432 87559 . - . ID=Phyra84004.2;Parent=Phyra84004;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_101 . CDS 87741 87877 . - 0 ID=Phyra84004;Parent=Phyra84004;rank=1 scaffold_101 . exon 87741 87877 . - . ID=Phyra84004.1;Parent=Phyra84004;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 ensembl protein_coding_gene 88969 91326 . - . ID=Phyra84005;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000015;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 88969 91326 . - . ID=Phyra84005;Parent=Phyra84005;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 88969 91326 . - 0 ID=Phyra84005;Parent=Phyra84005;rank=1 scaffold_101 . exon 88969 91326 . - . ID=Phyra84005.1;Parent=Phyra84005;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 91974 94904 . - . ID=Phyra84006;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000016;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 91974 94904 . - . ID=Phyra84006;Parent=Phyra84006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 91974 94904 . - 0 ID=Phyra84006;Parent=Phyra84006;rank=1 scaffold_101 . exon 91974 94904 . - . ID=Phyra84006.1;Parent=Phyra84006;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 95282 97462 . + . ID=Phyra84007;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000017;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 95282 97462 . + . ID=Phyra84007;Parent=Phyra84007;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 95282 97462 . + 0 ID=Phyra84007;Parent=Phyra84007;rank=1 scaffold_101 . exon 95282 97462 . + . ID=Phyra84007.1;Parent=Phyra84007;constitutive=1;rank=1 scaffold_101 . biological_region 95454 95455 0.999 - . logic_name=eponine scaffold_101 . biological_region 95490 95491 0.999 - . logic_name=eponine scaffold_101 . biological_region 97304 97306 0.999 + . logic_name=eponine scaffold_101 . biological_region 97423 97432 0.999 - . logic_name=eponine scaffold_101 . biological_region 98322 98327 0.999 - . logic_name=eponine scaffold_101 . biological_region 98328 98332 0.999 + . logic_name=eponine scaffold_101 . biological_region 98349 98351 0.999 - . logic_name=eponine scaffold_101 . biological_region 99531 99532 0.999 - . logic_name=eponine scaffold_101 . biological_region 101213 101216 0.999 + . logic_name=eponine scaffold_101 ensembl protein_coding_gene 98206 99564 . + . ID=Phyra84008;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000018;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 98206 99564 . + . ID=Phyra84008;Parent=Phyra84008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 98206 98567 . + 0 ID=Phyra84008;Parent=Phyra84008;rank=1 scaffold_101 . exon 98206 98567 . + . ID=Phyra84008.1;Parent=Phyra84008;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 . CDS 98664 99564 . + 0 ID=Phyra84008;Parent=Phyra84008;rank=2 scaffold_101 . exon 98664 99564 . + . ID=Phyra84008.2;Parent=Phyra84008;constitutive=1;ensembl_phase=2;rank=2 scaffold_101 ensembl protein_coding_gene 100349 100767 . - . ID=Phyra84009;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000019;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 100349 100767 . - . ID=Phyra84009;Parent=Phyra84009;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 100349 100633 . - 0 ID=Phyra84009;Parent=Phyra84009;rank=2 scaffold_101 . exon 100349 100633 . - . ID=Phyra84009.2;Parent=Phyra84009;constitutive=1;rank=2 scaffold_101 . CDS 100723 100767 . - 0 ID=Phyra84009;Parent=Phyra84009;rank=1 scaffold_101 . exon 100723 100767 . - . ID=Phyra84009.1;Parent=Phyra84009;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 102385 102837 . + . ID=Phyra84010;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000020;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 102385 102837 . + . ID=Phyra84010;Parent=Phyra84010;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 102385 102837 . + 0 ID=Phyra84010;Parent=Phyra84010;rank=1 scaffold_101 . exon 102385 102837 . + . ID=Phyra84010.1;Parent=Phyra84010;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 103569 104622 . + . ID=Phyra84011;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000021;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 103569 104622 . + . ID=Phyra84011;Parent=Phyra84011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 103569 104045 . + 0 ID=Phyra84011;Parent=Phyra84011;rank=1 scaffold_101 . exon 103569 104045 . + . ID=Phyra84011.1;Parent=Phyra84011;constitutive=1;rank=1 scaffold_101 . CDS 104111 104530 . + 0 ID=Phyra84011;Parent=Phyra84011;rank=2 scaffold_101 . exon 104111 104530 . + . ID=Phyra84011.2;Parent=Phyra84011;constitutive=1;rank=2 scaffold_101 . CDS 104593 104622 . + 0 ID=Phyra84011;Parent=Phyra84011;rank=3 scaffold_101 . exon 104593 104622 . + . ID=Phyra84011.3;Parent=Phyra84011;constitutive=1;rank=3 scaffold_101 ensembl protein_coding_gene 113905 123144 . + . ID=Phyra84012;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000022;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 113905 123144 . + . ID=Phyra84012;Parent=Phyra84012;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 113905 114090 . + 0 ID=Phyra84012;Parent=Phyra84012;rank=1 scaffold_101 . exon 113905 114090 . + . ID=Phyra84012.1;Parent=Phyra84012;constitutive=1;rank=1 scaffold_101 . CDS 114155 115096 . + 0 ID=Phyra84012;Parent=Phyra84012;rank=2 scaffold_101 . exon 114155 115096 . + . ID=Phyra84012.2;Parent=Phyra84012;constitutive=1;rank=2 scaffold_101 . CDS 115170 115585 . + 0 ID=Phyra84012;Parent=Phyra84012;rank=3 scaffold_101 . CDS 115655 116659 . + 0 ID=Phyra84012;Parent=Phyra84012;rank=4 scaffold_101 . CDS 116808 117537 . + 0 ID=Phyra84012;Parent=Phyra84012;rank=5 scaffold_101 . CDS 117688 118536 . + 0 ID=Phyra84012;Parent=Phyra84012;rank=6 scaffold_101 . CDS 118864 123144 . + 0 ID=Phyra84012;Parent=Phyra84012;rank=7 scaffold_101 . biological_region 120590 120595 0.999 + . logic_name=eponine scaffold_101 . biological_region 122852 122853 0.999 - . logic_name=eponine scaffold_101 ensembl protein_coding_gene 123391 124586 . + . ID=Phyra72181;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_101000003;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 123391 124586 . + . ID=Phyra72181;Parent=Phyra72181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 123391 124100 . + 0 ID=Phyra72181;Parent=Phyra72181;rank=1 scaffold_101 . exon 123391 124100 . + . ID=Phyra72181.1;Parent=Phyra72181;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 . CDS 124171 124269 . + 0 ID=Phyra72181;Parent=Phyra72181;rank=2 scaffold_101 . CDS 124337 124586 . + 0 ID=Phyra72181;Parent=Phyra72181;rank=3 scaffold_101 . exon 115170 115585 . + . ID=Phyra84012.3;Parent=Phyra84012;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_101 . exon 115655 116659 . + . ID=Phyra84012.4;Parent=Phyra84012;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_101 . exon 116808 117537 . + . ID=Phyra84012.5;Parent=Phyra84012;constitutive=1;ensembl_phase=2;rank=5 scaffold_101 . exon 117688 118536 . + . ID=Phyra84012.6;Parent=Phyra84012;constitutive=1;rank=6 scaffold_101 . exon 118864 123144 . + . ID=Phyra84012.7;Parent=Phyra84012;constitutive=1;rank=7 scaffold_101 . repeat_region 125592 125606 . ? . description=dust scaffold_101 . repeat_region 128679 128698 . ? . description=trf scaffold_101 . repeat_region 128679 128698 . ? . description=dust scaffold_101 . repeat_region 129768 129776 . ? . description=dust scaffold_101 . repeat_region 130446 130481 . ? . description=trf scaffold_101 . repeat_region 130464 130765 . + . description=GypsyPi-1c_LTR scaffold_101 . repeat_region 130770 132029 . + . description=GypsyPi-1c_I-int scaffold_101 . repeat_region 132138 133005 . + . description=GypsyPi-1c_I-int scaffold_101 . repeat_region 133266 133459 . + . description=GypsyPi-1c_I-int scaffold_101 . repeat_region 133619 133691 . + . description=GypsyPi-1c_I-int scaffold_101 . exon 124171 124269 . + . ID=Phyra72181.2;Parent=Phyra72181;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_101 . exon 124337 124586 . + . ID=Phyra72181.3;Parent=Phyra72181;constitutive=1;ensembl_phase=2;rank=3 scaffold_101 ensembl protein_coding_gene 124686 126892 . + . ID=Phyra84014;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000024;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 124686 126892 . + . ID=Phyra84014;Parent=Phyra84014;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 124686 124858 . + 0 ID=Phyra84014;Parent=Phyra84014;rank=1 scaffold_101 . exon 124686 124858 . + . ID=Phyra84014.1;Parent=Phyra84014;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 . CDS 124921 125323 . + 0 ID=Phyra84014;Parent=Phyra84014;rank=2 scaffold_101 . exon 124921 125323 . + . ID=Phyra84014.2;Parent=Phyra84014;constitutive=1;ensembl_phase=2;rank=2 scaffold_101 . CDS 125384 125545 . + 0 ID=Phyra84014;Parent=Phyra84014;rank=3 scaffold_101 . exon 125384 125545 . + . ID=Phyra84014.3;Parent=Phyra84014;constitutive=1;rank=3 scaffold_101 . CDS 125611 125742 . + 0 ID=Phyra84014;Parent=Phyra84014;rank=4 scaffold_101 . exon 125611 125742 . + . ID=Phyra84014.4;Parent=Phyra84014;constitutive=1;rank=4 scaffold_101 . CDS 125813 126260 . + 0 ID=Phyra84014;Parent=Phyra84014;rank=5 scaffold_101 . exon 125813 126260 . + . ID=Phyra84014.5;Parent=Phyra84014;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_101 . CDS 126292 126429 . + 0 ID=Phyra84014;Parent=Phyra84014;rank=6 scaffold_101 . exon 126292 126429 . + . ID=Phyra84014.6;Parent=Phyra84014;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_101 . CDS 126498 126892 . + 0 ID=Phyra84014;Parent=Phyra84014;rank=7 scaffold_101 . exon 126498 126892 . + . ID=Phyra84014.7;Parent=Phyra84014;constitutive=1;ensembl_phase=1;rank=7 scaffold_101 ensembl protein_coding_gene 127328 130109 . - . ID=Phyra84015;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000025;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 127328 130109 . - . ID=Phyra84015;Parent=Phyra84015;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 127328 127350 . - 0 ID=Phyra84015;Parent=Phyra84015;rank=8 scaffold_101 . exon 127328 127350 . - . ID=Phyra84015.8;Parent=Phyra84015;constitutive=1;ensembl_phase=1;rank=8 scaffold_101 . CDS 127490 127588 . - 0 ID=Phyra84015;Parent=Phyra84015;rank=7 scaffold_101 . exon 127490 127588 . - . ID=Phyra84015.7;Parent=Phyra84015;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_101 . CDS 127633 127774 . - 0 ID=Phyra84015;Parent=Phyra84015;rank=6 scaffold_101 . exon 127633 127774 . - . ID=Phyra84015.6;Parent=Phyra84015;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_101 . CDS 127837 127977 . - 0 ID=Phyra84015;Parent=Phyra84015;rank=5 scaffold_101 . exon 127837 127977 . - . ID=Phyra84015.5;Parent=Phyra84015;constitutive=1;rank=5 scaffold_101 . CDS 128043 128556 . - 0 ID=Phyra84015;Parent=Phyra84015;rank=4 scaffold_101 . exon 128043 128556 . - . ID=Phyra84015.4;Parent=Phyra84015;constitutive=1;ensembl_phase=2;rank=4 scaffold_101 . CDS 128714 129453 . - 0 ID=Phyra84015;Parent=Phyra84015;rank=3 scaffold_101 . exon 128714 129453 . - . ID=Phyra84015.3;Parent=Phyra84015;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_101 . CDS 129515 129707 . - 0 ID=Phyra84015;Parent=Phyra84015;rank=2 scaffold_101 . exon 129515 129707 . - . ID=Phyra84015.2;Parent=Phyra84015;constitutive=1;ensembl_phase=2;rank=2 scaffold_101 . CDS 129793 130109 . - 0 ID=Phyra84015;Parent=Phyra84015;rank=1 scaffold_101 . exon 129793 130109 . - . ID=Phyra84015.1;Parent=Phyra84015;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 ensembl protein_coding_gene 130858 131823 . + . ID=Phyra84016;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000026;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 130858 131823 . + . ID=Phyra84016;Parent=Phyra84016;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 130858 131823 . + 0 ID=Phyra84016;Parent=Phyra84016;rank=1 scaffold_101 . exon 130858 131823 . + . ID=Phyra84016.1;Parent=Phyra84016;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 139342 139599 . + . ID=Phyra39156;biotype=protein_coding;external_name=gwEuk.101.39.1;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 139342 139599 . + . ID=Phyra39156;Parent=Phyra39156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 139342 139599 . + 0 ID=Phyra39156;Parent=Phyra39156;rank=1 scaffold_101 . exon 139342 139599 . + . ID=Phyra39156.1;Parent=Phyra39156;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 134061 135667 . - . ID=Phyra84017;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000027;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 134061 135667 . - . ID=Phyra84017;Parent=Phyra84017;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 134061 134225 . - 0 ID=Phyra84017;Parent=Phyra84017;rank=2 scaffold_101 . exon 134061 134225 . - . ID=Phyra84017.2;Parent=Phyra84017;constitutive=1;rank=2 scaffold_101 . CDS 134387 135667 . - 0 ID=Phyra84017;Parent=Phyra84017;rank=1 scaffold_101 . exon 134387 135667 . - . ID=Phyra84017.1;Parent=Phyra84017;constitutive=1;rank=1 scaffold_101 . repeat_region 140230 158730 . ? . description=dust scaffold_101 . repeat_region 159185 159217 . ? . description=trf scaffold_101 . repeat_region 159325 159413 . ? . description=trf scaffold_101 . repeat_region 160245 160286 . ? . description=trf scaffold_101 . biological_region 162084 162088 0.999 + . logic_name=eponine scaffold_101 . biological_region 162111 162111 0.999 + . logic_name=eponine scaffold_101 . repeat_region 162199 162229 . ? . description=trf scaffold_101 ensembl protein_coding_gene 160379 162243 . - . ID=Phyra84018;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_101000028;logic_name=jgi_phyra1 scaffold_101 ensembl transcript 160379 162243 . - . ID=Phyra84018;Parent=Phyra84018;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_101 . CDS 160379 162241 . - 0 ID=Phyra84018;Parent=Phyra84018;rank=1 scaffold_101 . exon 160379 162243 . - . ID=Phyra84018.1;Parent=Phyra84018;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_102 1 162604 scaffold_102 . biological_region 359 362 0.999 - . logic_name=eponine scaffold_102 . biological_region 3794 3800 0.999 + . logic_name=eponine scaffold_102 . biological_region 4031 4037 0.999 + . logic_name=eponine scaffold_102 . biological_region 4482 4482 0.999 + . logic_name=eponine scaffold_102 ensembl protein_coding_gene 230 3106 . + . ID=Phyra84019;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000001;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 230 3106 . + . ID=Phyra84019;Parent=Phyra84019;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 230 3106 . + 0 ID=Phyra84019;Parent=Phyra84019;rank=1 scaffold_102 . exon 230 3106 . + . ID=Phyra84019.1;Parent=Phyra84019;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 3772 12719 . + . ID=Phyra84020;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000002;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 3772 12719 . + . ID=Phyra84020;Parent=Phyra84020;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 3772 4742 . + 0 ID=Phyra84020;Parent=Phyra84020;rank=1 scaffold_102 . exon 3772 4742 . + . ID=Phyra84020.1;Parent=Phyra84020;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 . CDS 4817 5642 . + 0 ID=Phyra84020;Parent=Phyra84020;rank=2 scaffold_102 . exon 4817 5642 . + . ID=Phyra84020.2;Parent=Phyra84020;constitutive=1;ensembl_phase=2;rank=2 scaffold_102 . CDS 5942 9805 . + 0 ID=Phyra84020;Parent=Phyra84020;rank=3 scaffold_102 . exon 5942 9805 . + . ID=Phyra84020.3;Parent=Phyra84020;constitutive=1;rank=3 scaffold_102 . CDS 9877 9978 . + 0 ID=Phyra84020;Parent=Phyra84020;rank=4 scaffold_102 . CDS 10092 12719 . + 0 ID=Phyra84020;Parent=Phyra84020;rank=5 scaffold_102 . repeat_region 15508 15542 . ? . description=trf scaffold_102 . repeat_region 15899 15927 . ? . description=trf scaffold_102 . repeat_region 16776 16805 . ? . description=dust scaffold_102 . repeat_region 16778 16805 . ? . description=trf scaffold_102 . repeat_region 17118 17139 . ? . description=trf scaffold_102 . repeat_region 18785 18813 . ? . description=trf scaffold_102 . exon 9877 9978 . + . ID=Phyra84020.4;Parent=Phyra84020;constitutive=1;rank=4 scaffold_102 . exon 10092 12719 . + . ID=Phyra84020.5;Parent=Phyra84020;constitutive=1;rank=5 scaffold_102 ensembl protein_coding_gene 14090 15476 . - . ID=Phyra84021;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000003;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 14090 15476 . - . ID=Phyra84021;Parent=Phyra84021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 14090 14746 . - 0 ID=Phyra84021;Parent=Phyra84021;rank=3 scaffold_102 . exon 14090 14746 . - . ID=Phyra84021.3;Parent=Phyra84021;constitutive=1;rank=3 scaffold_102 . CDS 14772 15121 . - 0 ID=Phyra84021;Parent=Phyra84021;rank=2 scaffold_102 . exon 14772 15121 . - . ID=Phyra84021.2;Parent=Phyra84021;constitutive=1;ensembl_phase=1;rank=2 scaffold_102 . CDS 15314 15476 . - 0 ID=Phyra84021;Parent=Phyra84021;rank=1 scaffold_102 . exon 15314 15476 . - . ID=Phyra84021.1;Parent=Phyra84021;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 ensembl protein_coding_gene 16479 19365 . - . ID=Phyra84022;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000004;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 16479 19365 . - . ID=Phyra84022;Parent=Phyra84022;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 16479 16768 . - 0 ID=Phyra84022;Parent=Phyra84022;rank=9 scaffold_102 . exon 16479 16768 . - . ID=Phyra84022.9;Parent=Phyra84022;constitutive=1;ensembl_phase=1;rank=9 scaffold_102 . CDS 16830 16992 . - 0 ID=Phyra84022;Parent=Phyra84022;rank=8 scaffold_102 . exon 16830 16992 . - . ID=Phyra84022.8;Parent=Phyra84022;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_102 . CDS 17259 17594 . - 0 ID=Phyra84022;Parent=Phyra84022;rank=7 scaffold_102 . exon 17259 17594 . - . ID=Phyra84022.7;Parent=Phyra84022;constitutive=1;rank=7 scaffold_102 . CDS 17629 17780 . - 0 ID=Phyra84022;Parent=Phyra84022;rank=6 scaffold_102 . exon 17629 17780 . - . ID=Phyra84022.6;Parent=Phyra84022;constitutive=1;ensembl_phase=1;rank=6 scaffold_102 . CDS 18097 18157 . - 0 ID=Phyra84022;Parent=Phyra84022;rank=5 scaffold_102 . exon 18097 18157 . - . ID=Phyra84022.5;Parent=Phyra84022;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_102 . CDS 18277 18359 . - 0 ID=Phyra84022;Parent=Phyra84022;rank=4 scaffold_102 . exon 18277 18359 . - . ID=Phyra84022.4;Parent=Phyra84022;constitutive=1;ensembl_phase=1;rank=4 scaffold_102 . CDS 18469 18870 . - 0 ID=Phyra84022;Parent=Phyra84022;rank=3 scaffold_102 . exon 18469 18870 . - . ID=Phyra84022.3;Parent=Phyra84022;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_102 . CDS 19159 19163 . - 0 ID=Phyra84022;Parent=Phyra84022;rank=2 scaffold_102 . CDS 19331 19365 . - 0 ID=Phyra84022;Parent=Phyra84022;rank=1 scaffold_102 . repeat_region 21515 21650 . + . description=Polinton-1_PI scaffold_102 . exon 19159 19163 . - . ID=Phyra84022.2;Parent=Phyra84022;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_102 . exon 19331 19365 . - . ID=Phyra84022.1;Parent=Phyra84022;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 . repeat_region 22680 33376 . ? . description=dust scaffold_102 . biological_region 35424 35424 0.999 + . logic_name=eponine scaffold_102 . biological_region 37412 37413 0.999 - . logic_name=eponine scaffold_102 ensembl protein_coding_gene 33841 34596 . + . ID=Phyra72182;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_102000001;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 33841 34596 . + . ID=Phyra72182;Parent=Phyra72182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 33841 34596 . + 0 ID=Phyra72182;Parent=Phyra72182;rank=1 scaffold_102 . exon 33841 34596 . + . ID=Phyra72182.1;Parent=Phyra72182;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 34751 39010 . - . ID=Phyra84024;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000006;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 34751 39010 . - . ID=Phyra84024;Parent=Phyra84024;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 34751 39010 . - 0 ID=Phyra84024;Parent=Phyra84024;rank=1 scaffold_102 . exon 34751 39010 . - . ID=Phyra84024.1;Parent=Phyra84024;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 39914 40669 . - . ID=Phyra72183;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_102000002;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 39914 40669 . - . ID=Phyra72183;Parent=Phyra72183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 39914 40669 . - 0 ID=Phyra72183;Parent=Phyra72183;rank=1 scaffold_102 . exon 39914 40669 . - . ID=Phyra72183.1;Parent=Phyra72183;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 42214 43570 . - . ID=Phyra84026;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000008;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 42214 43570 . - . ID=Phyra84026;Parent=Phyra84026;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 42214 42294 . - 0 ID=Phyra84026;Parent=Phyra84026;rank=7 scaffold_102 . exon 42214 42294 . - . ID=Phyra84026.7;Parent=Phyra84026;constitutive=1;rank=7 scaffold_102 . CDS 42379 42591 . - 0 ID=Phyra84026;Parent=Phyra84026;rank=6 scaffold_102 . exon 42379 42591 . - . ID=Phyra84026.6;Parent=Phyra84026;constitutive=1;rank=6 scaffold_102 . CDS 42668 42734 . - 0 ID=Phyra84026;Parent=Phyra84026;rank=5 scaffold_102 . exon 42668 42734 . - . ID=Phyra84026.5;Parent=Phyra84026;constitutive=1;ensembl_phase=2;rank=5 scaffold_102 . CDS 42839 42960 . - 0 ID=Phyra84026;Parent=Phyra84026;rank=4 scaffold_102 . exon 42839 42960 . - . ID=Phyra84026.4;Parent=Phyra84026;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_102 . CDS 43065 43181 . - 0 ID=Phyra84026;Parent=Phyra84026;rank=3 scaffold_102 . exon 43065 43181 . - . ID=Phyra84026.3;Parent=Phyra84026;constitutive=1;rank=3 scaffold_102 . CDS 43250 43291 . - 0 ID=Phyra84026;Parent=Phyra84026;rank=2 scaffold_102 . exon 43250 43291 . - . ID=Phyra84026.2;Parent=Phyra84026;constitutive=1;rank=2 scaffold_102 . CDS 43367 43570 . - 0 ID=Phyra84026;Parent=Phyra84026;rank=1 scaffold_102 . exon 43367 43570 . - . ID=Phyra84026.1;Parent=Phyra84026;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 43840 44702 . + . ID=Phyra84027;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000009;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 43840 44702 . + . ID=Phyra84027;Parent=Phyra84027;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 43840 44101 . + 0 ID=Phyra84027;Parent=Phyra84027;rank=1 scaffold_102 . exon 43840 44101 . + . ID=Phyra84027.1;Parent=Phyra84027;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 . CDS 44175 44509 . + 0 ID=Phyra84027;Parent=Phyra84027;rank=2 scaffold_102 . exon 44175 44509 . + . ID=Phyra84027.2;Parent=Phyra84027;constitutive=1;ensembl_phase=1;rank=2 scaffold_102 . CDS 44580 44702 . + 0 ID=Phyra84027;Parent=Phyra84027;rank=3 scaffold_102 . exon 44580 44702 . + . ID=Phyra84027.3;Parent=Phyra84027;constitutive=1;rank=3 scaffold_102 ensembl protein_coding_gene 44801 45638 . - . ID=Phyra84028;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000010;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 44801 45638 . - . ID=Phyra84028;Parent=Phyra84028;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 44801 45028 . - 0 ID=Phyra84028;Parent=Phyra84028;rank=2 scaffold_102 . exon 44801 45028 . - . ID=Phyra84028.2;Parent=Phyra84028;constitutive=1;rank=2 scaffold_102 . CDS 45087 45638 . - 0 ID=Phyra84028;Parent=Phyra84028;rank=1 scaffold_102 . exon 45087 45638 . - . ID=Phyra84028.1;Parent=Phyra84028;constitutive=1;rank=1 scaffold_102 . repeat_region 52355 52404 . ? . description=dust scaffold_102 . repeat_region 52839 52873 . ? . description=trf scaffold_102 . repeat_region 53230 53266 . ? . description=trf scaffold_102 . biological_region 55925 55927 0.999 + . logic_name=eponine scaffold_102 . biological_region 55926 55928 0.999 - . logic_name=eponine scaffold_102 . biological_region 56476 56478 0.999 - . logic_name=eponine scaffold_102 . biological_region 56922 56924 0.999 + . logic_name=eponine scaffold_102 ensembl protein_coding_gene 56254 57789 . + . ID=Phyra39193;biotype=protein_coding;external_name=gwEuk.102.16.1;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 56254 57789 . + . ID=Phyra39193;Parent=Phyra39193;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 56254 56843 . + 0 ID=Phyra39193;Parent=Phyra39193;rank=1 scaffold_102 . exon 56254 56843 . + . ID=Phyra39193.1;Parent=Phyra39193;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 . CDS 56865 56984 . + 0 ID=Phyra39193;Parent=Phyra39193;rank=2 scaffold_102 . exon 56865 56984 . + . ID=Phyra39193.2;Parent=Phyra39193;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_102 . CDS 57060 57789 . + 0 ID=Phyra39193;Parent=Phyra39193;rank=3 scaffold_102 . exon 57060 57789 . + . ID=Phyra39193.3;Parent=Phyra39193;constitutive=1;ensembl_phase=2;rank=3 scaffold_102 ensembl protein_coding_gene 49085 50682 . - . ID=Phyra84029;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000011;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 49085 50682 . - . ID=Phyra84029;Parent=Phyra84029;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 49085 49087 . - 0 ID=Phyra84029;Parent=Phyra84029;rank=2 scaffold_102 . exon 49085 49087 . - . ID=Phyra84029.2;Parent=Phyra84029;constitutive=1;rank=2 scaffold_102 . CDS 49312 50682 . - 0 ID=Phyra84029;Parent=Phyra84029;rank=1 scaffold_102 . exon 49312 50682 . - . ID=Phyra84029.1;Parent=Phyra84029;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 51012 51583 . + . ID=Phyra84030;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000012;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 51012 51583 . + . ID=Phyra84030;Parent=Phyra84030;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 51012 51134 . + 0 ID=Phyra84030;Parent=Phyra84030;rank=1 scaffold_102 . exon 51012 51134 . + . ID=Phyra84030.1;Parent=Phyra84030;constitutive=1;rank=1 scaffold_102 . CDS 51193 51216 . + 0 ID=Phyra84030;Parent=Phyra84030;rank=2 scaffold_102 . exon 51193 51216 . + . ID=Phyra84030.2;Parent=Phyra84030;constitutive=1;rank=2 scaffold_102 . CDS 51296 51409 . + 0 ID=Phyra84030;Parent=Phyra84030;rank=3 scaffold_102 . exon 51296 51409 . + . ID=Phyra84030.3;Parent=Phyra84030;constitutive=1;rank=3 scaffold_102 . CDS 51443 51583 . + 0 ID=Phyra84030;Parent=Phyra84030;rank=4 scaffold_102 . exon 51443 51583 . + . ID=Phyra84030.4;Parent=Phyra84030;constitutive=1;rank=4 scaffold_102 ensembl protein_coding_gene 55363 55869 . - . ID=Phyra84031;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000013;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 55363 55869 . - . ID=Phyra84031;Parent=Phyra84031;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 55363 55869 . - 0 ID=Phyra84031;Parent=Phyra84031;rank=1 scaffold_102 . exon 55363 55869 . - . ID=Phyra84031.1;Parent=Phyra84031;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 58052 59083 . - . ID=Phyra84033;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000015;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 58052 59083 . - . ID=Phyra84033;Parent=Phyra84033;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 58052 58132 . - 0 ID=Phyra84033;Parent=Phyra84033;rank=4 scaffold_102 . exon 58052 58132 . - . ID=Phyra84033.4;Parent=Phyra84033;constitutive=1;rank=4 scaffold_102 . CDS 58201 58519 . - 0 ID=Phyra84033;Parent=Phyra84033;rank=3 scaffold_102 . exon 58201 58519 . - . ID=Phyra84033.3;Parent=Phyra84033;constitutive=1;ensembl_phase=2;rank=3 scaffold_102 . CDS 58779 58840 . - 0 ID=Phyra84033;Parent=Phyra84033;rank=2 scaffold_102 . exon 58779 58840 . - . ID=Phyra84033.2;Parent=Phyra84033;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_102 . CDS 58913 59083 . - 0 ID=Phyra84033;Parent=Phyra84033;rank=1 scaffold_102 . exon 58913 59083 . - . ID=Phyra84033.1;Parent=Phyra84033;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 59482 60807 . + . ID=Phyra84034;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000016;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 59482 60807 . + . ID=Phyra84034;Parent=Phyra84034;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 59482 60807 . + 0 ID=Phyra84034;Parent=Phyra84034;rank=1 scaffold_102 . exon 59482 60807 . + . ID=Phyra84034.1;Parent=Phyra84034;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 66887 68165 . - . ID=Phyra84037;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000019;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 66887 68165 . - . ID=Phyra84037;Parent=Phyra84037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 66887 67389 . - 0 ID=Phyra84037;Parent=Phyra84037;rank=5 scaffold_102 . exon 66887 67389 . - . ID=Phyra84037.5;Parent=Phyra84037;constitutive=1;ensembl_phase=1;rank=5 scaffold_102 . CDS 67454 67650 . - 0 ID=Phyra84037;Parent=Phyra84037;rank=4 scaffold_102 . CDS 67718 67910 . - 0 ID=Phyra84037;Parent=Phyra84037;rank=3 scaffold_102 . CDS 67980 68058 . - 0 ID=Phyra84037;Parent=Phyra84037;rank=2 scaffold_102 . CDS 68130 68165 . - 0 ID=Phyra84037;Parent=Phyra84037;rank=1 scaffold_102 ensembl protein_coding_gene 60869 65975 . - . ID=Phyra96744;biotype=protein_coding;external_name=C_scaffold_102000003;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 60869 65975 . - . ID=Phyra96744;Parent=Phyra96744;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 60869 61006 . - 0 ID=Phyra96744;Parent=Phyra96744;rank=11 scaffold_102 . exon 60869 61006 . - . ID=Phyra96744.11;Parent=Phyra96744;constitutive=1;rank=11 scaffold_102 . CDS 61058 61255 . - 0 ID=Phyra96744;Parent=Phyra96744;rank=10 scaffold_102 . exon 61058 61255 . - . ID=Phyra96744.10;Parent=Phyra96744;constitutive=1;rank=10 scaffold_102 . CDS 61330 61518 . - 0 ID=Phyra96744;Parent=Phyra96744;rank=9 scaffold_102 . exon 61330 61518 . - . ID=Phyra96744.9;Parent=Phyra96744;constitutive=1;rank=9 scaffold_102 . CDS 61615 62112 . - 0 ID=Phyra96744;Parent=Phyra96744;rank=8 scaffold_102 . exon 61615 62112 . - . ID=Phyra96744.8;Parent=Phyra96744;constitutive=1;rank=8 scaffold_102 . CDS 62143 62374 . - 0 ID=Phyra96744;Parent=Phyra96744;rank=7 scaffold_102 . exon 62143 62374 . - . ID=Phyra96744.7;Parent=Phyra96744;constitutive=1;ensembl_phase=2;rank=7 scaffold_102 . CDS 62555 62655 . - 0 ID=Phyra96744;Parent=Phyra96744;rank=6 scaffold_102 . exon 62555 62655 . - . ID=Phyra96744.6;Parent=Phyra96744;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_102 . CDS 62726 62819 . - 0 ID=Phyra96744;Parent=Phyra96744;rank=5 scaffold_102 . exon 62726 62819 . - . ID=Phyra96744.5;Parent=Phyra96744;constitutive=1;ensembl_phase=2;rank=5 scaffold_102 . CDS 62903 63210 . - 0 ID=Phyra96744;Parent=Phyra96744;rank=4 scaffold_102 . exon 62903 63210 . - . ID=Phyra96744.4;Parent=Phyra96744;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_102 . CDS 63287 63394 . - 0 ID=Phyra96744;Parent=Phyra96744;rank=3 scaffold_102 . exon 63287 63394 . - . ID=Phyra96744.3;Parent=Phyra96744;constitutive=1;rank=3 scaffold_102 . CDS 63846 64561 . - 0 ID=Phyra96744;Parent=Phyra96744;rank=2 scaffold_102 . exon 63846 64561 . - . ID=Phyra96744.2;Parent=Phyra96744;constitutive=1;ensembl_phase=1;rank=2 scaffold_102 . CDS 64604 65975 . - 0 ID=Phyra96744;Parent=Phyra96744;rank=1 scaffold_102 . exon 64604 65975 . - . ID=Phyra96744.1;Parent=Phyra96744;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 . biological_region 70483 70487 0.999 + . logic_name=eponine scaffold_102 . biological_region 74819 74821 0.999 + . logic_name=eponine scaffold_102 . biological_region 74971 74972 0.999 - . logic_name=eponine scaffold_102 . biological_region 75008 75010 0.999 + . logic_name=eponine scaffold_102 . biological_region 75318 75318 0.999 + . logic_name=eponine scaffold_102 . biological_region 75384 75390 0.999 - . logic_name=eponine scaffold_102 . biological_region 75410 75410 0.999 - . logic_name=eponine scaffold_102 ensembl protein_coding_gene 71587 72383 . - . ID=Phyra39201;biotype=protein_coding;external_name=gwEuk.102.24.1;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 71587 72383 . - . ID=Phyra39201;Parent=Phyra39201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 71587 71657 . - 0 ID=Phyra39201;Parent=Phyra39201;rank=4 scaffold_102 . exon 71587 71657 . - . ID=Phyra39201.4;Parent=Phyra39201;constitutive=1;ensembl_phase=1;rank=4 scaffold_102 . CDS 71729 71930 . - 0 ID=Phyra39201;Parent=Phyra39201;rank=3 scaffold_102 . exon 71729 71930 . - . ID=Phyra39201.3;Parent=Phyra39201;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_102 . CDS 72007 72079 . - 0 ID=Phyra39201;Parent=Phyra39201;rank=2 scaffold_102 . exon 72007 72079 . - . ID=Phyra39201.2;Parent=Phyra39201;constitutive=1;ensembl_phase=2;rank=2 scaffold_102 . CDS 72142 72383 . - 0 ID=Phyra39201;Parent=Phyra39201;rank=1 scaffold_102 . exon 72142 72383 . - . ID=Phyra39201.1;Parent=Phyra39201;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 ensembl protein_coding_gene 74344 75489 . + . ID=Phyra72184;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_102000003;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 74344 75489 . + . ID=Phyra72184;Parent=Phyra72184;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 74344 75489 . + 0 ID=Phyra72184;Parent=Phyra72184;rank=1 scaffold_102 . exon 74344 75489 . + . ID=Phyra72184.1;Parent=Phyra72184;constitutive=1;rank=1 scaffold_102 . exon 67454 67650 . - . ID=Phyra84037.4;Parent=Phyra84037;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_102 . exon 67718 67910 . - . ID=Phyra84037.3;Parent=Phyra84037;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_102 . exon 67980 68058 . - . ID=Phyra84037.2;Parent=Phyra84037;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_102 . exon 68130 68165 . - . ID=Phyra84037.1;Parent=Phyra84037;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 69258 71403 . + . ID=Phyra84038;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000020;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 69258 71403 . + . ID=Phyra84038;Parent=Phyra84038;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 69258 70099 . + 0 ID=Phyra84038;Parent=Phyra84038;rank=1 scaffold_102 . exon 69258 70099 . + . ID=Phyra84038.1;Parent=Phyra84038;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 . CDS 70164 71403 . + 0 ID=Phyra84038;Parent=Phyra84038;rank=2 scaffold_102 . exon 70164 71403 . + . ID=Phyra84038.2;Parent=Phyra84038;constitutive=1;ensembl_phase=2;rank=2 scaffold_102 ensembl protein_coding_gene 73054 74208 . + . ID=Phyra84039;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000021;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 73054 74208 . + . ID=Phyra84039;Parent=Phyra84039;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 73054 74208 . + 0 ID=Phyra84039;Parent=Phyra84039;rank=1 scaffold_102 . exon 73054 74208 . + . ID=Phyra84039.1;Parent=Phyra84039;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 75994 79941 . + . ID=Phyra84041;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000023;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 75994 79941 . + . ID=Phyra84041;Parent=Phyra84041;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 75994 78249 . + 0 ID=Phyra84041;Parent=Phyra84041;rank=1 scaffold_102 . exon 75994 78249 . + . ID=Phyra84041.1;Parent=Phyra84041;constitutive=1;rank=1 scaffold_102 . CDS 78318 78898 . + 0 ID=Phyra84041;Parent=Phyra84041;rank=2 scaffold_102 . CDS 79001 79015 . + 0 ID=Phyra84041;Parent=Phyra84041;rank=3 scaffold_102 . CDS 79046 79200 . + 0 ID=Phyra84041;Parent=Phyra84041;rank=4 scaffold_102 . CDS 79253 79323 . + 0 ID=Phyra84041;Parent=Phyra84041;rank=5 scaffold_102 . CDS 79394 79474 . + 0 ID=Phyra84041;Parent=Phyra84041;rank=6 scaffold_102 . CDS 79542 79785 . + 0 ID=Phyra84041;Parent=Phyra84041;rank=7 scaffold_102 . CDS 79904 79941 . + 0 ID=Phyra84041;Parent=Phyra84041;rank=8 scaffold_102 . repeat_region 79597 79649 . ? . description=dust scaffold_102 . repeat_region 79609 79661 . ? . description=trf scaffold_102 . repeat_region 79609 79661 . ? . description=trf scaffold_102 . exon 78318 78898 . + . ID=Phyra84041.2;Parent=Phyra84041;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_102 . exon 79001 79015 . + . ID=Phyra84041.3;Parent=Phyra84041;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_102 . exon 79046 79200 . + . ID=Phyra84041.4;Parent=Phyra84041;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_102 . exon 79253 79323 . + . ID=Phyra84041.5;Parent=Phyra84041;constitutive=1;ensembl_phase=1;rank=5 scaffold_102 . exon 79394 79474 . + . ID=Phyra84041.6;Parent=Phyra84041;constitutive=1;rank=6 scaffold_102 . exon 79542 79785 . + . ID=Phyra84041.7;Parent=Phyra84041;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_102 . exon 79904 79941 . + . ID=Phyra84041.8;Parent=Phyra84041;constitutive=1;ensembl_phase=1;rank=8 scaffold_102 ensembl protein_coding_gene 80772 82460 . - . ID=Phyra84042;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000024;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 80772 82460 . - . ID=Phyra84042;Parent=Phyra84042;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 80772 81886 . - 0 ID=Phyra84042;Parent=Phyra84042;rank=4 scaffold_102 . exon 80772 81886 . - . ID=Phyra84042.4;Parent=Phyra84042;constitutive=1;ensembl_phase=1;rank=4 scaffold_102 . CDS 81946 82083 . - 0 ID=Phyra84042;Parent=Phyra84042;rank=3 scaffold_102 . exon 81946 82083 . - . ID=Phyra84042.3;Parent=Phyra84042;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_102 . CDS 82146 82235 . - 0 ID=Phyra84042;Parent=Phyra84042;rank=2 scaffold_102 . exon 82146 82235 . - . ID=Phyra84042.2;Parent=Phyra84042;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_102 . CDS 82322 82460 . - 0 ID=Phyra84042;Parent=Phyra84042;rank=1 scaffold_102 . exon 82322 82460 . - . ID=Phyra84042.1;Parent=Phyra84042;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 ensembl protein_coding_gene 85384 85929 . - . ID=Phyra84043;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000025;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 85384 85929 . - . ID=Phyra84043;Parent=Phyra84043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 85384 85929 . - 0 ID=Phyra84043;Parent=Phyra84043;rank=1 scaffold_102 . exon 85384 85929 . - . ID=Phyra84043.1;Parent=Phyra84043;constitutive=1;rank=1 scaffold_102 . biological_region 87462 87464 0.999 - . logic_name=eponine scaffold_102 . biological_region 89293 89294 0.999 - . logic_name=eponine scaffold_102 . biological_region 94117 94120 0.999 - . logic_name=eponine scaffold_102 ensembl protein_coding_gene 87902 88117 . + . ID=Phyra39216;biotype=protein_coding;external_name=gwEuk.102.39.1;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 87902 88117 . + . ID=Phyra39216;Parent=Phyra39216;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 87902 88117 . + 0 ID=Phyra39216;Parent=Phyra39216;rank=1 scaffold_102 . exon 87902 88117 . + . ID=Phyra39216.1;Parent=Phyra39216;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 88554 89583 . - . ID=Phyra84045;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000027;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 88554 89583 . - . ID=Phyra84045;Parent=Phyra84045;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 88554 88993 . - 0 ID=Phyra84045;Parent=Phyra84045;rank=3 scaffold_102 . exon 88554 88993 . - . ID=Phyra84045.3;Parent=Phyra84045;constitutive=1;ensembl_phase=1;rank=3 scaffold_102 . CDS 89138 89240 . - 0 ID=Phyra84045;Parent=Phyra84045;rank=2 scaffold_102 . exon 89138 89240 . - . ID=Phyra84045.2;Parent=Phyra84045;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_102 . CDS 89443 89583 . - 0 ID=Phyra84045;Parent=Phyra84045;rank=1 scaffold_102 . exon 89443 89583 . - . ID=Phyra84045.1;Parent=Phyra84045;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 89810 91135 . + . ID=Phyra84046;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000028;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 89810 91135 . + . ID=Phyra84046;Parent=Phyra84046;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 89810 91135 . + 0 ID=Phyra84046;Parent=Phyra84046;rank=1 scaffold_102 . exon 89810 91135 . + . ID=Phyra84046.1;Parent=Phyra84046;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 91950 92936 . - . ID=Phyra84047;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000029;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 91950 92936 . - . ID=Phyra84047;Parent=Phyra84047;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 91950 91999 . - 0 ID=Phyra84047;Parent=Phyra84047;rank=6 scaffold_102 . exon 91950 91999 . - . ID=Phyra84047.6;Parent=Phyra84047;constitutive=1;ensembl_phase=1;rank=6 scaffold_102 . CDS 92059 92136 . - 0 ID=Phyra84047;Parent=Phyra84047;rank=5 scaffold_102 . exon 92059 92136 . - . ID=Phyra84047.5;Parent=Phyra84047;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_102 . CDS 92191 92224 . - 0 ID=Phyra84047;Parent=Phyra84047;rank=4 scaffold_102 . exon 92191 92224 . - . ID=Phyra84047.4;Parent=Phyra84047;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_102 . CDS 92291 92338 . - 0 ID=Phyra84047;Parent=Phyra84047;rank=3 scaffold_102 . exon 92291 92338 . - . ID=Phyra84047.3;Parent=Phyra84047;constitutive=1;rank=3 scaffold_102 . CDS 92410 92520 . - 0 ID=Phyra84047;Parent=Phyra84047;rank=2 scaffold_102 . exon 92410 92520 . - . ID=Phyra84047.2;Parent=Phyra84047;constitutive=1;rank=2 scaffold_102 . CDS 92589 92936 . - 0 ID=Phyra84047;Parent=Phyra84047;rank=1 scaffold_102 . exon 92589 92936 . - . ID=Phyra84047.1;Parent=Phyra84047;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 93334 94993 . + . ID=Phyra84048;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000030;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 93334 94993 . + . ID=Phyra84048;Parent=Phyra84048;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 93334 94467 . + 0 ID=Phyra84048;Parent=Phyra84048;rank=1 scaffold_102 . exon 93334 94467 . + . ID=Phyra84048.1;Parent=Phyra84048;constitutive=1;rank=1 scaffold_102 . CDS 94503 94657 . + 0 ID=Phyra84048;Parent=Phyra84048;rank=2 scaffold_102 . exon 94503 94657 . + . ID=Phyra84048.2;Parent=Phyra84048;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_102 . CDS 94723 94768 . + 0 ID=Phyra84048;Parent=Phyra84048;rank=3 scaffold_102 . exon 94723 94768 . + . ID=Phyra84048.3;Parent=Phyra84048;constitutive=1;ensembl_phase=2;rank=3 scaffold_102 . CDS 94877 94993 . + 0 ID=Phyra84048;Parent=Phyra84048;rank=4 scaffold_102 . exon 94877 94993 . + . ID=Phyra84048.4;Parent=Phyra84048;constitutive=1;rank=4 scaffold_102 . repeat_region 103225 103608 . ? . description=trf scaffold_102 ensembl protein_coding_gene 95714 98047 . + . ID=Phyra84049;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000031;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 95714 98047 . + . ID=Phyra84049;Parent=Phyra84049;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 95714 98047 . + 0 ID=Phyra84049;Parent=Phyra84049;rank=1 scaffold_102 . exon 95714 98047 . + . ID=Phyra84049.1;Parent=Phyra84049;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 98241 100603 . - . ID=Phyra84050;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000032;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 98241 100603 . - . ID=Phyra84050;Parent=Phyra84050;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 98241 100311 . - 0 ID=Phyra84050;Parent=Phyra84050;rank=3 scaffold_102 . exon 98241 100311 . - . ID=Phyra84050.3;Parent=Phyra84050;constitutive=1;ensembl_phase=2;rank=3 scaffold_102 . CDS 100385 100452 . - 0 ID=Phyra84050;Parent=Phyra84050;rank=2 scaffold_102 . exon 100385 100452 . - . ID=Phyra84050.2;Parent=Phyra84050;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_102 . CDS 100550 100603 . - 0 ID=Phyra84050;Parent=Phyra84050;rank=1 scaffold_102 . exon 100550 100603 . - . ID=Phyra84050.1;Parent=Phyra84050;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 100987 103415 . + . ID=Phyra84051;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000033;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 100987 103415 . + . ID=Phyra84051;Parent=Phyra84051;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 100987 101263 . + 0 ID=Phyra84051;Parent=Phyra84051;rank=1 scaffold_102 . exon 100987 101263 . + . ID=Phyra84051.1;Parent=Phyra84051;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 . CDS 101328 101822 . + 0 ID=Phyra84051;Parent=Phyra84051;rank=2 scaffold_102 . exon 101328 101822 . + . ID=Phyra84051.2;Parent=Phyra84051;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_102 . CDS 102256 102779 . + 0 ID=Phyra84051;Parent=Phyra84051;rank=3 scaffold_102 . exon 102256 102779 . + . ID=Phyra84051.3;Parent=Phyra84051;constitutive=1;ensembl_phase=1;rank=3 scaffold_102 . CDS 103032 103415 . + 0 ID=Phyra84051;Parent=Phyra84051;rank=4 scaffold_102 . exon 103032 103415 . + . ID=Phyra84051.4;Parent=Phyra84051;constitutive=1;rank=4 scaffold_102 ensembl protein_coding_gene 103923 104345 . + . ID=Phyra84052;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000034;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 103923 104345 . + . ID=Phyra84052;Parent=Phyra84052;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 103923 104345 . + 0 ID=Phyra84052;Parent=Phyra84052;rank=1 scaffold_102 . exon 103923 104345 . + . ID=Phyra84052.1;Parent=Phyra84052;constitutive=1;rank=1 scaffold_102 . biological_region 107602 107607 0.999 - . logic_name=eponine scaffold_102 . repeat_region 108577 108585 . ? . description=dust scaffold_102 ensembl protein_coding_gene 105636 106601 . + . ID=Phyra84053;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000035;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 105636 106601 . + . ID=Phyra84053;Parent=Phyra84053;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 105636 106601 . + 0 ID=Phyra84053;Parent=Phyra84053;rank=1 scaffold_102 . exon 105636 106601 . + . ID=Phyra84053.1;Parent=Phyra84053;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 107242 108141 . + . ID=Phyra84054;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000036;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 107242 108141 . + . ID=Phyra84054;Parent=Phyra84054;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 107242 108141 . + 0 ID=Phyra84054;Parent=Phyra84054;rank=1 scaffold_102 . exon 107242 108141 . + . ID=Phyra84054.1;Parent=Phyra84054;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 109877 111082 . + . ID=Phyra84055;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000037;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 109877 111082 . + . ID=Phyra84055;Parent=Phyra84055;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 109877 111082 . + 0 ID=Phyra84055;Parent=Phyra84055;rank=1 scaffold_102 . exon 109877 111082 . + . ID=Phyra84055.1;Parent=Phyra84055;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 111246 122618 . - . ID=Phyra84056;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000038;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 111246 122618 . - . ID=Phyra84056;Parent=Phyra84056;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 111246 119653 . - 0 ID=Phyra84056;Parent=Phyra84056;rank=3 scaffold_102 . exon 111246 119653 . - . ID=Phyra84056.3;Parent=Phyra84056;constitutive=1;ensembl_phase=1;rank=3 scaffold_102 . CDS 119949 121391 . - 0 ID=Phyra84056;Parent=Phyra84056;rank=2 scaffold_102 . CDS 121469 122618 . - 0 ID=Phyra84056;Parent=Phyra84056;rank=1 scaffold_102 . exon 119949 121391 . - . ID=Phyra84056.2;Parent=Phyra84056;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_102 . exon 121469 122618 . - . ID=Phyra84056.1;Parent=Phyra84056;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 ensembl protein_coding_gene 123527 123841 . + . ID=Phyra84057;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000039;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 123527 123841 . + . ID=Phyra84057;Parent=Phyra84057;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 123527 123841 . + 0 ID=Phyra84057;Parent=Phyra84057;rank=1 scaffold_102 . exon 123527 123841 . + . ID=Phyra84057.1;Parent=Phyra84057;constitutive=1;rank=1 scaffold_102 . repeat_region 124852 124860 . ? . description=dust scaffold_102 . biological_region 125176 125180 0.999 - . logic_name=eponine scaffold_102 . repeat_region 126433 126466 . ? . description=dust scaffold_102 . biological_region 127522 127526 0.999 - . logic_name=eponine scaffold_102 . repeat_region 132522 132531 . ? . description=dust scaffold_102 ensembl protein_coding_gene 125555 126825 . - . ID=Phyra84058;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000040;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 125555 126825 . - . ID=Phyra84058;Parent=Phyra84058;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 125555 125683 . - 0 ID=Phyra84058;Parent=Phyra84058;rank=5 scaffold_102 . exon 125555 125683 . - . ID=Phyra84058.5;Parent=Phyra84058;constitutive=1;rank=5 scaffold_102 . CDS 126015 126021 . - 0 ID=Phyra84058;Parent=Phyra84058;rank=4 scaffold_102 . exon 126015 126021 . - . ID=Phyra84058.4;Parent=Phyra84058;constitutive=1;ensembl_phase=2;rank=4 scaffold_102 . CDS 126060 126424 . - 0 ID=Phyra84058;Parent=Phyra84058;rank=3 scaffold_102 . exon 126060 126424 . - . ID=Phyra84058.3;Parent=Phyra84058;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_102 . CDS 126490 126492 . - 0 ID=Phyra84058;Parent=Phyra84058;rank=2 scaffold_102 . exon 126490 126492 . - . ID=Phyra84058.2;Parent=Phyra84058;constitutive=1;rank=2 scaffold_102 . CDS 126577 126825 . - 0 ID=Phyra84058;Parent=Phyra84058;rank=1 scaffold_102 . exon 126577 126825 . - . ID=Phyra84058.1;Parent=Phyra84058;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 127328 128203 . - . ID=Phyra84059;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000041;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 127328 128203 . - . ID=Phyra84059;Parent=Phyra84059;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 127328 128203 . - 0 ID=Phyra84059;Parent=Phyra84059;rank=1 scaffold_102 . exon 127328 128203 . - . ID=Phyra84059.1;Parent=Phyra84059;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 141573 142432 . + . ID=Phyra84062;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000044;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 141573 142432 . + . ID=Phyra84062;Parent=Phyra84062;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 141573 142068 . + 0 ID=Phyra84062;Parent=Phyra84062;rank=1 scaffold_102 . exon 141573 142068 . + . ID=Phyra84062.1;Parent=Phyra84062;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 . CDS 142140 142432 . + 0 ID=Phyra84062;Parent=Phyra84062;rank=2 scaffold_102 . exon 142140 142432 . + . ID=Phyra84062.2;Parent=Phyra84062;constitutive=1;ensembl_phase=1;rank=2 scaffold_102 ensembl protein_coding_gene 136958 141047 . + . ID=Phyra96749;biotype=protein_coding;external_name=C_scaffold_102000008;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 136958 141047 . + . ID=Phyra96749;Parent=Phyra96749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 136958 138299 . + 0 ID=Phyra96749;Parent=Phyra96749;rank=1 scaffold_102 . exon 136958 138299 . + . ID=Phyra96749.1;Parent=Phyra96749;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 . CDS 138424 138616 . + 0 ID=Phyra96749;Parent=Phyra96749;rank=2 scaffold_102 . exon 138424 138616 . + . ID=Phyra96749.2;Parent=Phyra96749;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_102 . CDS 138659 138807 . + 0 ID=Phyra96749;Parent=Phyra96749;rank=3 scaffold_102 . exon 138659 138807 . + . ID=Phyra96749.3;Parent=Phyra96749;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_102 . CDS 138863 139259 . + 0 ID=Phyra96749;Parent=Phyra96749;rank=4 scaffold_102 . exon 138863 139259 . + . ID=Phyra96749.4;Parent=Phyra96749;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_102 . CDS 139324 139570 . + 0 ID=Phyra96749;Parent=Phyra96749;rank=5 scaffold_102 . exon 139324 139570 . + . ID=Phyra96749.5;Parent=Phyra96749;constitutive=1;ensembl_phase=2;rank=5 scaffold_102 . CDS 139635 139941 . + 0 ID=Phyra96749;Parent=Phyra96749;rank=6 scaffold_102 . exon 139635 139941 . + . ID=Phyra96749.6;Parent=Phyra96749;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_102 . CDS 140539 140655 . + 0 ID=Phyra96749;Parent=Phyra96749;rank=7 scaffold_102 . exon 140539 140655 . + . ID=Phyra96749.7;Parent=Phyra96749;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_102 . CDS 140713 141047 . + 0 ID=Phyra96749;Parent=Phyra96749;rank=8 scaffold_102 . exon 140713 141047 . + . ID=Phyra96749.8;Parent=Phyra96749;constitutive=1;ensembl_phase=1;rank=8 scaffold_102 . biological_region 144183 144185 0.999 - . logic_name=eponine scaffold_102 . biological_region 145692 145700 0.999 - . logic_name=eponine scaffold_102 . biological_region 145702 145707 0.999 + . logic_name=eponine scaffold_102 . biological_region 145725 145729 0.999 + . logic_name=eponine scaffold_102 . biological_region 145863 145863 0.999 + . logic_name=eponine scaffold_102 . biological_region 146025 146028 0.999 - . logic_name=eponine scaffold_102 . biological_region 146449 146449 0.999 + . logic_name=eponine scaffold_102 . biological_region 147027 147029 0.999 + . logic_name=eponine scaffold_102 . biological_region 147069 147072 0.999 - . logic_name=eponine scaffold_102 . biological_region 147089 147094 0.999 + . logic_name=eponine scaffold_102 . biological_region 147141 147144 0.999 - . logic_name=eponine scaffold_102 . biological_region 147145 147149 0.999 + . logic_name=eponine scaffold_102 . biological_region 147173 147174 0.999 - . logic_name=eponine scaffold_102 . biological_region 147817 147822 0.999 + . logic_name=eponine scaffold_102 . biological_region 148471 148478 0.999 + . logic_name=eponine scaffold_102 . biological_region 148591 148592 0.999 + . logic_name=eponine scaffold_102 . biological_region 149151 149156 0.999 - . logic_name=eponine scaffold_102 . biological_region 149799 149800 0.999 + . logic_name=eponine scaffold_102 . biological_region 149824 149828 0.999 - . logic_name=eponine scaffold_102 . biological_region 149829 149832 0.999 + . logic_name=eponine scaffold_102 . biological_region 149879 149884 0.999 - . logic_name=eponine scaffold_102 . biological_region 149901 149904 0.999 + . logic_name=eponine scaffold_102 . biological_region 149944 149946 0.999 - . logic_name=eponine scaffold_102 . biological_region 150945 150948 0.999 + . logic_name=eponine scaffold_102 . biological_region 151110 151110 0.999 - . logic_name=eponine scaffold_102 . biological_region 151244 151248 0.999 - . logic_name=eponine scaffold_102 . biological_region 151266 151271 0.999 - . logic_name=eponine scaffold_102 . biological_region 151273 151281 0.999 + . logic_name=eponine scaffold_102 . biological_region 152599 152602 0.999 + . logic_name=eponine scaffold_102 ensembl protein_coding_gene 143725 144966 . + . ID=Phyra72185;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_102000004;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 143725 144966 . + . ID=Phyra72185;Parent=Phyra72185;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 143725 144537 . + 0 ID=Phyra72185;Parent=Phyra72185;rank=1 scaffold_102 . exon 143725 144537 . + . ID=Phyra72185.1;Parent=Phyra72185;constitutive=1;rank=1 scaffold_102 . CDS 144607 144966 . + 0 ID=Phyra72185;Parent=Phyra72185;rank=2 scaffold_102 . exon 144607 144966 . + . ID=Phyra72185.2;Parent=Phyra72185;constitutive=1;rank=2 scaffold_102 ensembl protein_coding_gene 146319 147998 . + . ID=Phyra84064;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000046;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 146319 147998 . + . ID=Phyra84064;Parent=Phyra84064;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 146319 147367 . + 0 ID=Phyra84064;Parent=Phyra84064;rank=1 scaffold_102 . exon 146319 147367 . + . ID=Phyra84064.1;Parent=Phyra84064;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 . CDS 147549 147583 . + 0 ID=Phyra84064;Parent=Phyra84064;rank=2 scaffold_102 . exon 147549 147583 . + . ID=Phyra84064.2;Parent=Phyra84064;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_102 . CDS 147662 147794 . + 0 ID=Phyra84064;Parent=Phyra84064;rank=3 scaffold_102 . exon 147662 147794 . + . ID=Phyra84064.3;Parent=Phyra84064;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_102 . CDS 147938 147998 . + 0 ID=Phyra84064;Parent=Phyra84064;rank=4 scaffold_102 . exon 147938 147998 . + . ID=Phyra84064.4;Parent=Phyra84064;constitutive=1;ensembl_phase=2;rank=4 scaffold_102 ensembl protein_coding_gene 148401 150653 . - . ID=Phyra84065;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000047;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 148401 150653 . - . ID=Phyra84065;Parent=Phyra84065;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 148401 148545 . - 0 ID=Phyra84065;Parent=Phyra84065;rank=7 scaffold_102 . exon 148401 148545 . - . ID=Phyra84065.7;Parent=Phyra84065;constitutive=1;ensembl_phase=2;rank=7 scaffold_102 . CDS 148647 148750 . - 0 ID=Phyra84065;Parent=Phyra84065;rank=6 scaffold_102 . exon 148647 148750 . - . ID=Phyra84065.6;Parent=Phyra84065;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_102 . CDS 148821 148902 . - 0 ID=Phyra84065;Parent=Phyra84065;rank=5 scaffold_102 . exon 148821 148902 . - . ID=Phyra84065.5;Parent=Phyra84065;constitutive=1;ensembl_phase=2;rank=5 scaffold_102 . CDS 148978 149034 . - 0 ID=Phyra84065;Parent=Phyra84065;rank=4 scaffold_102 . exon 148978 149034 . - . ID=Phyra84065.4;Parent=Phyra84065;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_102 . CDS 149178 149310 . - 0 ID=Phyra84065;Parent=Phyra84065;rank=3 scaffold_102 . exon 149178 149310 . - . ID=Phyra84065.3;Parent=Phyra84065;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_102 . CDS 149565 149569 . - 0 ID=Phyra84065;Parent=Phyra84065;rank=2 scaffold_102 . exon 149565 149569 . - . ID=Phyra84065.2;Parent=Phyra84065;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_102 . CDS 149605 150653 . - 0 ID=Phyra84065;Parent=Phyra84065;rank=1 scaffold_102 . exon 149605 150653 . - . ID=Phyra84065.1;Parent=Phyra84065;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 ensembl protein_coding_gene 152047 152925 . - . ID=Phyra84066;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000048;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 152047 152925 . - . ID=Phyra84066;Parent=Phyra84066;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 152047 152925 . - 0 ID=Phyra84066;Parent=Phyra84066;rank=1 scaffold_102 . exon 152047 152925 . - . ID=Phyra84066.1;Parent=Phyra84066;constitutive=1;rank=1 scaffold_102 . repeat_region 154059 154070 . ? . description=dust scaffold_102 ensembl tRNA_gene 153748 153828 . + . ID=EPrPRAG00000000142;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_102 ensembl transcript 153748 153828 . + . ID=EPrPRAT00000000142;Parent=EPrPRAG00000000142;biotype=tRNA;logic_name=ncrna_eg scaffold_102 . exon 153748 153828 . + . ID=EPrPRAE00000000142;Parent=EPrPRAT00000000142;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 154257 156494 . - . ID=Phyra84067;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000049;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 154257 156494 . - . ID=Phyra84067;Parent=Phyra84067;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 154257 156494 . - 0 ID=Phyra84067;Parent=Phyra84067;rank=1 scaffold_102 . exon 154257 156494 . - . ID=Phyra84067.1;Parent=Phyra84067;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 157800 158150 . - . ID=Phyra84068;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000050;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 157800 158150 . - . ID=Phyra84068;Parent=Phyra84068;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 157800 158150 . - 0 ID=Phyra84068;Parent=Phyra84068;rank=1 scaffold_102 . exon 157800 158150 . - . ID=Phyra84068.1;Parent=Phyra84068;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 158426 162061 . - . ID=Phyra84069;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_102000051;logic_name=jgi_phyra1 scaffold_102 ensembl transcript 158426 162061 . - . ID=Phyra84069;Parent=Phyra84069;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_102 . CDS 158426 160851 . - 0 ID=Phyra84069;Parent=Phyra84069;rank=4 scaffold_102 . exon 158426 160851 . - . ID=Phyra84069.4;Parent=Phyra84069;constitutive=1;ensembl_phase=1;rank=4 scaffold_102 . CDS 161200 161211 . - 0 ID=Phyra84069;Parent=Phyra84069;rank=3 scaffold_102 . exon 161200 161211 . - . ID=Phyra84069.3;Parent=Phyra84069;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_102 . CDS 161500 161846 . - 0 ID=Phyra84069;Parent=Phyra84069;rank=2 scaffold_102 . exon 161500 161846 . - . ID=Phyra84069.2;Parent=Phyra84069;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_102 . CDS 161883 162061 . - 0 ID=Phyra84069;Parent=Phyra84069;rank=1 scaffold_102 . exon 161883 162061 . - . ID=Phyra84069.1;Parent=Phyra84069;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_100 1 164655 scaffold_100 . repeat_region 320 1196 . ? . description=trf scaffold_100 . biological_region 2540 2545 0.999 + . logic_name=eponine scaffold_100 . repeat_region 2612 2634 . ? . description=trf scaffold_100 . biological_region 3866 3866 0.999 + . logic_name=eponine scaffold_100 . repeat_region 6773 6824 . ? . description=trf scaffold_100 . repeat_region 9219 9778 . ? . description=dust scaffold_100 ensembl protein_coding_gene 1284 1727 . - . ID=Phyra72171;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_100000001;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 1284 1727 . - . ID=Phyra72171;Parent=Phyra72171;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 1284 1727 . - 0 ID=Phyra72171;Parent=Phyra72171;rank=1 scaffold_100 . exon 1284 1727 . - . ID=Phyra72171.1;Parent=Phyra72171;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 9818 16448 . + . ID=Phyra83940;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000002;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 9818 16448 . + . ID=Phyra83940;Parent=Phyra83940;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 9818 11762 . + 0 ID=Phyra83940;Parent=Phyra83940;rank=1 scaffold_100 . exon 9818 11762 . + . ID=Phyra83940.1;Parent=Phyra83940;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_100 . CDS 12222 13112 . + 0 ID=Phyra83940;Parent=Phyra83940;rank=2 scaffold_100 . exon 12222 13112 . + . ID=Phyra83940.2;Parent=Phyra83940;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_100 . CDS 13238 13387 . + 0 ID=Phyra83940;Parent=Phyra83940;rank=3 scaffold_100 . exon 13238 13387 . + . ID=Phyra83940.3;Parent=Phyra83940;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_100 . CDS 13727 14202 . + 0 ID=Phyra83940;Parent=Phyra83940;rank=4 scaffold_100 . exon 13727 14202 . + . ID=Phyra83940.4;Parent=Phyra83940;constitutive=1;ensembl_phase=1;rank=4 scaffold_100 . CDS 14385 15843 . + 0 ID=Phyra83940;Parent=Phyra83940;rank=5 scaffold_100 . exon 14385 15843 . + . ID=Phyra83940.5;Parent=Phyra83940;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_100 . CDS 16429 16448 . + 0 ID=Phyra83940;Parent=Phyra83940;rank=6 scaffold_100 . exon 16429 16448 . + . ID=Phyra83940.6;Parent=Phyra83940;constitutive=1;ensembl_phase=1;rank=6 scaffold_100 . repeat_region 17615 20151 . ? . description=dust scaffold_100 . biological_region 20488 20490 0.999 - . logic_name=eponine scaffold_100 . biological_region 21526 21526 0.999 - . logic_name=eponine scaffold_100 . repeat_region 24308 24357 . ? . description=dust scaffold_100 . repeat_region 25246 25295 . ? . description=dust scaffold_100 . repeat_region 26046 27432 . ? . description=dust scaffold_100 . biological_region 28800 28808 0.999 - . logic_name=eponine scaffold_100 . repeat_region 28838 28849 . ? . description=dust scaffold_100 . repeat_region 28921 28929 . ? . description=dust scaffold_100 ensembl protein_coding_gene 20540 21470 . - . ID=Phyra83941;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000003;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 20540 21470 . - . ID=Phyra83941;Parent=Phyra83941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 20540 20596 . - 0 ID=Phyra83941;Parent=Phyra83941;rank=3 scaffold_100 . exon 20540 20596 . - . ID=Phyra83941.3;Parent=Phyra83941;constitutive=1;rank=3 scaffold_100 . CDS 20664 21308 . - 0 ID=Phyra83941;Parent=Phyra83941;rank=2 scaffold_100 . exon 20664 21308 . - . ID=Phyra83941.2;Parent=Phyra83941;constitutive=1;rank=2 scaffold_100 . CDS 21399 21470 . - 0 ID=Phyra83941;Parent=Phyra83941;rank=1 scaffold_100 . exon 21399 21470 . - . ID=Phyra83941.1;Parent=Phyra83941;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 28064 28801 . - . ID=Phyra83942;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000004;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 28064 28801 . - . ID=Phyra83942;Parent=Phyra83942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 28064 28801 . - 0 ID=Phyra83942;Parent=Phyra83942;rank=1 scaffold_100 . exon 28064 28801 . - . ID=Phyra83942.1;Parent=Phyra83942;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 34420 35547 . - . ID=Phyra72172;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_100000002;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 34420 35547 . - . ID=Phyra72172;Parent=Phyra72172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 34420 35547 . - 0 ID=Phyra72172;Parent=Phyra72172;rank=1 scaffold_100 . exon 34420 35547 . - . ID=Phyra72172.1;Parent=Phyra72172;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 30643 31365 . - . ID=Phyra83943;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000005;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 30643 31365 . - . ID=Phyra83943;Parent=Phyra83943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 30643 31365 . - 0 ID=Phyra83943;Parent=Phyra83943;rank=1 scaffold_100 . exon 30643 31365 . - . ID=Phyra83943.1;Parent=Phyra83943;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 38084 39167 . - . ID=Phyra83945;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000007;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 38084 39167 . - . ID=Phyra83945;Parent=Phyra83945;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 38084 38097 . - 0 ID=Phyra83945;Parent=Phyra83945;rank=2 scaffold_100 . exon 38084 38097 . - . ID=Phyra83945.2;Parent=Phyra83945;constitutive=1;ensembl_phase=1;rank=2 scaffold_100 . CDS 38201 39167 . - 0 ID=Phyra83945;Parent=Phyra83945;rank=1 scaffold_100 . exon 38201 39167 . - . ID=Phyra83945.1;Parent=Phyra83945;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_100 . biological_region 38760 38764 0.999 + . logic_name=eponine scaffold_100 . repeat_region 39235 39389 . ? . description=dust scaffold_100 . biological_region 39502 39502 0.999 - . logic_name=eponine scaffold_100 ensembl pseudogene 47451 48555 . - . ID=Phyra39091;biotype=pseudogene;external_name=gwEuk.100.13.1;logic_name=jgi_phyra1 scaffold_100 ensembl pseudogene 47451 48555 . - . ID=Phyra39091;Parent=Phyra39091;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_100 . exon 47451 48555 . - . ID=Phyra39091.1;Parent=Phyra39091;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_100 ensembl protein_coding_gene 43189 44698 . + . ID=Phyra83946;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000008;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 43189 44698 . + . ID=Phyra83946;Parent=Phyra83946;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 43189 44047 . + 0 ID=Phyra83946;Parent=Phyra83946;rank=1 scaffold_100 . exon 43189 44047 . + . ID=Phyra83946.1;Parent=Phyra83946;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_100 . CDS 44258 44619 . + 0 ID=Phyra83946;Parent=Phyra83946;rank=2 scaffold_100 . exon 44258 44619 . + . ID=Phyra83946.2;Parent=Phyra83946;constitutive=1;ensembl_phase=1;rank=2 scaffold_100 . CDS 44681 44698 . + 0 ID=Phyra83946;Parent=Phyra83946;rank=3 scaffold_100 . exon 44681 44698 . + . ID=Phyra83946.3;Parent=Phyra83946;constitutive=1;rank=3 scaffold_100 ensembl protein_coding_gene 51216 53597 . - . ID=Phyra83948;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000010;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 51216 53597 . - . ID=Phyra83948;Parent=Phyra83948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 51216 53597 . - 0 ID=Phyra83948;Parent=Phyra83948;rank=1 scaffold_100 . exon 51216 53597 . - . ID=Phyra83948.1;Parent=Phyra83948;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 53979 56225 . + . ID=Phyra83949;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000011;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 53979 56225 . + . ID=Phyra83949;Parent=Phyra83949;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 53979 56225 . + 0 ID=Phyra83949;Parent=Phyra83949;rank=1 scaffold_100 . exon 53979 56225 . + . ID=Phyra83949.1;Parent=Phyra83949;constitutive=1;rank=1 scaffold_100 . biological_region 59555 59557 0.999 + . logic_name=eponine scaffold_100 . biological_region 59986 59991 0.999 - . logic_name=eponine scaffold_100 . biological_region 60410 60413 0.999 - . logic_name=eponine scaffold_100 . repeat_region 61596 61643 . ? . description=trf scaffold_100 . biological_region 61776 61776 0.999 + . logic_name=eponine scaffold_100 . biological_region 64144 64145 0.999 - . logic_name=eponine scaffold_100 . biological_region 64854 64854 0.999 - . logic_name=eponine scaffold_100 ensembl snoRNA_gene 59002 59106 . + . ID=EPrPRAG00000000055;biotype=snoRNA;description=Small nucleolar RNA snR60/Z5/Z230/Z193/J17 [Source:RFAM%3BAcc:RF00309];external_name=snosnR60_Z15;logic_name=ncrna_eg scaffold_100 ensembl snoRNA 59002 59106 . + . ID=EPrPRAT00000000055;Parent=EPrPRAG00000000055;biotype=snoRNA;logic_name=ncrna_eg scaffold_100 ensembl snoRNA_gene 59278 59357 . + . ID=EPrPRAG00000000174;biotype=snoRNA;description=Small nucleolar RNA SNORD36 [Source:RFAM%3BAcc:RF00049];external_name=SNORD36;logic_name=ncrna_eg scaffold_100 ensembl snoRNA 59278 59357 . + . ID=EPrPRAT00000000174;Parent=EPrPRAG00000000174;biotype=snoRNA;logic_name=ncrna_eg scaffold_100 . exon 59002 59106 . + . ID=EPrPRAE00000000055;Parent=EPrPRAT00000000055;constitutive=1;rank=1 scaffold_100 . exon 59278 59357 . + . ID=EPrPRAE00000000174;Parent=EPrPRAT00000000174;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_100 ensembl protein_coding_gene 65215 65973 . - . ID=Phyra72173;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_100000003;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 65215 65973 . - . ID=Phyra72173;Parent=Phyra72173;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 65215 65973 . - 0 ID=Phyra72173;Parent=Phyra72173;rank=1 scaffold_100 . exon 65215 65973 . - . ID=Phyra72173.1;Parent=Phyra72173;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 66683 67519 . + . ID=Phyra72174;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_100000004;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 66683 67519 . + . ID=Phyra72174;Parent=Phyra72174;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 66683 67519 . + 0 ID=Phyra72174;Parent=Phyra72174;rank=1 scaffold_100 . exon 66683 67519 . + . ID=Phyra72174.1;Parent=Phyra72174;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 59564 60079 . - . ID=Phyra83950;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000012;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 59564 60079 . - . ID=Phyra83950;Parent=Phyra83950;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 59564 60079 . - 0 ID=Phyra83950;Parent=Phyra83950;rank=1 scaffold_100 . exon 59564 60079 . - . ID=Phyra83950.1;Parent=Phyra83950;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 61457 62719 . - . ID=Phyra83951;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000013;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 61457 62719 . - . ID=Phyra83951;Parent=Phyra83951;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 61457 62719 . - 0 ID=Phyra83951;Parent=Phyra83951;rank=1 scaffold_100 . exon 61457 62719 . - . ID=Phyra83951.1;Parent=Phyra83951;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 63910 65043 . + . ID=Phyra83952;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000014;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 63910 65043 . + . ID=Phyra83952;Parent=Phyra83952;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 63910 65043 . + 0 ID=Phyra83952;Parent=Phyra83952;rank=1 scaffold_100 . exon 63910 65043 . + . ID=Phyra83952.1;Parent=Phyra83952;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 67623 68039 . - . ID=Phyra83955;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000017;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 67623 68039 . - . ID=Phyra83955;Parent=Phyra83955;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 67623 68039 . - 0 ID=Phyra83955;Parent=Phyra83955;rank=1 scaffold_100 . exon 67623 68039 . - . ID=Phyra83955.1;Parent=Phyra83955;constitutive=1;rank=1 scaffold_100 . repeat_region 68332 68354 . ? . description=dust scaffold_100 . repeat_region 69351 69400 . ? . description=dust scaffold_100 . repeat_region 71679 72624 . ? . description=dust scaffold_100 . repeat_region 73421 73510 . ? . description=dust scaffold_100 ensembl protein_coding_gene 70429 71304 . + . ID=Phyra39099;biotype=protein_coding;external_name=gwEuk.100.21.1;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 70429 71304 . + . ID=Phyra39099;Parent=Phyra39099;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 70429 71304 . + 0 ID=Phyra39099;Parent=Phyra39099;rank=1 scaffold_100 . exon 70429 71304 . + . ID=Phyra39099.1;Parent=Phyra39099;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 75074 77559 . + . ID=Phyra72176;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_100000006;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 75074 77559 . + . ID=Phyra72176;Parent=Phyra72176;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 75074 75108 . + 0 ID=Phyra72176;Parent=Phyra72176;rank=1 scaffold_100 . exon 75074 75108 . + . ID=Phyra72176.1;Parent=Phyra72176;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_100 . CDS 75430 75515 . + 0 ID=Phyra72176;Parent=Phyra72176;rank=2 scaffold_100 . exon 75430 75515 . + . ID=Phyra72176.2;Parent=Phyra72176;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_100 . CDS 75580 75638 . + 0 ID=Phyra72176;Parent=Phyra72176;rank=3 scaffold_100 . exon 75580 75638 . + . ID=Phyra72176.3;Parent=Phyra72176;constitutive=1;ensembl_phase=1;rank=3 scaffold_100 . CDS 75714 77476 . + 0 ID=Phyra72176;Parent=Phyra72176;rank=4 scaffold_100 . exon 75714 77476 . + . ID=Phyra72176.4;Parent=Phyra72176;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_100 . CDS 77514 77559 . + 0 ID=Phyra72176;Parent=Phyra72176;rank=5 scaffold_100 ensembl protein_coding_gene 68361 69851 . + . ID=Phyra83956;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000018;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 68361 69851 . + . ID=Phyra83956;Parent=Phyra83956;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 68361 68683 . + 0 ID=Phyra83956;Parent=Phyra83956;rank=1 scaffold_100 . exon 68361 68683 . + . ID=Phyra83956.1;Parent=Phyra83956;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_100 . CDS 68752 69089 . + 0 ID=Phyra83956;Parent=Phyra83956;rank=2 scaffold_100 . exon 68752 69089 . + . ID=Phyra83956.2;Parent=Phyra83956;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_100 . CDS 69160 69325 . + 0 ID=Phyra83956;Parent=Phyra83956;rank=3 scaffold_100 . exon 69160 69325 . + . ID=Phyra83956.3;Parent=Phyra83956;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_100 . CDS 69611 69851 . + 0 ID=Phyra83956;Parent=Phyra83956;rank=4 scaffold_100 . exon 69611 69851 . + . ID=Phyra83956.4;Parent=Phyra83956;constitutive=1;ensembl_phase=2;rank=4 scaffold_100 ensembl protein_coding_gene 73702 74533 . + . ID=Phyra83959;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000021;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 73702 74533 . + . ID=Phyra83959;Parent=Phyra83959;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 73702 73935 . + 0 ID=Phyra83959;Parent=Phyra83959;rank=1 scaffold_100 . exon 73702 73935 . + . ID=Phyra83959.1;Parent=Phyra83959;constitutive=1;rank=1 scaffold_100 . CDS 74222 74533 . + 0 ID=Phyra83959;Parent=Phyra83959;rank=2 scaffold_100 . exon 74222 74533 . + . ID=Phyra83959.2;Parent=Phyra83959;constitutive=1;rank=2 scaffold_100 ensembl protein_coding_gene 72694 73139 . + . ID=Phyra96728;biotype=protein_coding;external_name=C_scaffold_100000001;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 72694 73139 . + . ID=Phyra96728;Parent=Phyra96728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 72694 72712 . + 0 ID=Phyra96728;Parent=Phyra96728;rank=1 scaffold_100 . exon 72694 72712 . + . ID=Phyra96728.1;Parent=Phyra96728;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_100 . CDS 72760 73139 . + 0 ID=Phyra96728;Parent=Phyra96728;rank=2 scaffold_100 . exon 72760 73139 . + . ID=Phyra96728.2;Parent=Phyra96728;constitutive=1;ensembl_phase=1;rank=2 scaffold_100 ensembl protein_coding_gene 74688 74963 . - . ID=Phyra96730;biotype=protein_coding;external_name=C_scaffold_100000003;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 74688 74963 . - . ID=Phyra96730;Parent=Phyra96730;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 74688 74963 . - 0 ID=Phyra96730;Parent=Phyra96730;rank=1 scaffold_100 . exon 74688 74963 . - . ID=Phyra96730.1;Parent=Phyra96730;constitutive=1;rank=1 scaffold_100 . biological_region 82332 82333 0.999 - . logic_name=eponine scaffold_100 . biological_region 82354 82355 0.999 + . logic_name=eponine scaffold_100 . biological_region 82418 82422 0.999 - . logic_name=eponine scaffold_100 . biological_region 82478 82479 0.999 - . logic_name=eponine scaffold_100 . exon 77514 77559 . + . ID=Phyra72176.5;Parent=Phyra72176;constitutive=1;ensembl_phase=2;rank=5 scaffold_100 ensembl protein_coding_gene 77736 79385 . + . ID=Phyra83961;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000023;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 77736 79385 . + . ID=Phyra83961;Parent=Phyra83961;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 77736 79385 . + 0 ID=Phyra83961;Parent=Phyra83961;rank=1 scaffold_100 . exon 77736 79385 . + . ID=Phyra83961.1;Parent=Phyra83961;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 79586 80689 . - . ID=Phyra83962;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000024;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 79586 80689 . - . ID=Phyra83962;Parent=Phyra83962;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 79586 80689 . - 0 ID=Phyra83962;Parent=Phyra83962;rank=1 scaffold_100 . exon 79586 80689 . - . ID=Phyra83962.1;Parent=Phyra83962;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 82204 83766 . + . ID=Phyra83963;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000025;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 82204 83766 . + . ID=Phyra83963;Parent=Phyra83963;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 82204 82536 . + 0 ID=Phyra83963;Parent=Phyra83963;rank=1 scaffold_100 . exon 82204 82536 . + . ID=Phyra83963.1;Parent=Phyra83963;constitutive=1;rank=1 scaffold_100 . CDS 82681 83766 . + 0 ID=Phyra83963;Parent=Phyra83963;rank=2 scaffold_100 . exon 82681 83766 . + . ID=Phyra83963.2;Parent=Phyra83963;constitutive=1;rank=2 scaffold_100 ensembl protein_coding_gene 83967 86330 . - . ID=Phyra83964;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000026;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 83967 86330 . - . ID=Phyra83964;Parent=Phyra83964;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 83967 86330 . - 0 ID=Phyra83964;Parent=Phyra83964;rank=1 scaffold_100 . exon 83967 86330 . - . ID=Phyra83964.1;Parent=Phyra83964;constitutive=1;rank=1 scaffold_100 . repeat_region 89288 89334 . ? . description=dust scaffold_100 . repeat_region 94320 94367 . ? . description=trf scaffold_100 . repeat_region 94698 94710 . ? . description=dust scaffold_100 ensembl protein_coding_gene 87781 89055 . + . ID=Phyra83965;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000027;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 87781 89055 . + . ID=Phyra83965;Parent=Phyra83965;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 87781 89055 . + 0 ID=Phyra83965;Parent=Phyra83965;rank=1 scaffold_100 . exon 87781 89055 . + . ID=Phyra83965.1;Parent=Phyra83965;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 89458 92247 . - . ID=Phyra83966;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000028;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 89458 92247 . - . ID=Phyra83966;Parent=Phyra83966;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 89458 92247 . - 0 ID=Phyra83966;Parent=Phyra83966;rank=1 scaffold_100 . exon 89458 92247 . - . ID=Phyra83966.1;Parent=Phyra83966;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 93832 94296 . - . ID=Phyra83967;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000029;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 93832 94296 . - . ID=Phyra83967;Parent=Phyra83967;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 93832 94296 . - 0 ID=Phyra83967;Parent=Phyra83967;rank=1 scaffold_100 . exon 93832 94296 . - . ID=Phyra83967.1;Parent=Phyra83967;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 95329 98487 . - . ID=Phyra83968;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000030;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 95329 98487 . - . ID=Phyra83968;Parent=Phyra83968;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 95329 95387 . - 0 ID=Phyra83968;Parent=Phyra83968;rank=3 scaffold_100 . exon 95329 95387 . - . ID=Phyra83968.3;Parent=Phyra83968;constitutive=1;ensembl_phase=1;rank=3 scaffold_100 . CDS 95439 95563 . - 0 ID=Phyra83968;Parent=Phyra83968;rank=2 scaffold_100 . exon 95439 95563 . - . ID=Phyra83968.2;Parent=Phyra83968;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_100 . CDS 95621 98487 . - 0 ID=Phyra83968;Parent=Phyra83968;rank=1 scaffold_100 . exon 95621 98487 . - . ID=Phyra83968.1;Parent=Phyra83968;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_100 ensembl protein_coding_gene 98889 100082 . - . ID=Phyra83969;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000031;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 98889 100082 . - . ID=Phyra83969;Parent=Phyra83969;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 98889 100082 . - 0 ID=Phyra83969;Parent=Phyra83969;rank=1 scaffold_100 . exon 98889 100082 . - . ID=Phyra83969.1;Parent=Phyra83969;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 103641 105001 . - . ID=Phyra83970;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000032;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 103641 105001 . - . ID=Phyra83970;Parent=Phyra83970;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 103641 103644 . - 0 ID=Phyra83970;Parent=Phyra83970;rank=2 scaffold_100 . exon 103641 103644 . - . ID=Phyra83970.2;Parent=Phyra83970;constitutive=1;ensembl_phase=2;rank=2 scaffold_100 . CDS 104055 105001 . - 0 ID=Phyra83970;Parent=Phyra83970;rank=1 scaffold_100 . exon 104055 105001 . - . ID=Phyra83970.1;Parent=Phyra83970;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_100 ensembl protein_coding_gene 105530 105973 . - . ID=Phyra83971;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000033;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 105530 105973 . - . ID=Phyra83971;Parent=Phyra83971;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 105530 105973 . - 0 ID=Phyra83971;Parent=Phyra83971;rank=1 scaffold_100 . exon 105530 105973 . - . ID=Phyra83971.1;Parent=Phyra83971;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 106248 106901 . + . ID=Phyra83972;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000034;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 106248 106901 . + . ID=Phyra83972;Parent=Phyra83972;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 106248 106901 . + 0 ID=Phyra83972;Parent=Phyra83972;rank=1 scaffold_100 . exon 106248 106901 . + . ID=Phyra83972.1;Parent=Phyra83972;constitutive=1;rank=1 scaffold_100 . biological_region 106770 106776 0.999 - . logic_name=eponine scaffold_100 . biological_region 106827 106830 0.999 + . logic_name=eponine scaffold_100 . repeat_region 111862 111869 . ? . description=dust scaffold_100 ensembl protein_coding_gene 112442 114883 . + . ID=Phyra39105;biotype=protein_coding;external_name=gwEuk.100.27.1;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 112442 114883 . + . ID=Phyra39105;Parent=Phyra39105;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 112442 112718 . + 0 ID=Phyra39105;Parent=Phyra39105;rank=1 scaffold_100 . exon 112442 112718 . + . ID=Phyra39105.1;Parent=Phyra39105;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_100 . CDS 114603 114883 . + 0 ID=Phyra39105;Parent=Phyra39105;rank=2 scaffold_100 . exon 114603 114883 . + . ID=Phyra39105.2;Parent=Phyra39105;constitutive=1;ensembl_phase=1;rank=2 scaffold_100 ensembl protein_coding_gene 121350 122348 . - . ID=Phyra83974;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000036;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 121350 122348 . - . ID=Phyra83974;Parent=Phyra83974;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 121350 122348 . - 0 ID=Phyra83974;Parent=Phyra83974;rank=1 scaffold_100 . exon 121350 122348 . - . ID=Phyra83974.1;Parent=Phyra83974;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 123449 124654 . + . ID=Phyra83975;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000037;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 123449 124654 . + . ID=Phyra83975;Parent=Phyra83975;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 123449 124654 . + 0 ID=Phyra83975;Parent=Phyra83975;rank=1 scaffold_100 . exon 123449 124654 . + . ID=Phyra83975.1;Parent=Phyra83975;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 132745 134007 . + . ID=Phyra39106;biotype=protein_coding;external_name=gwEuk.100.28.1;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 132745 134007 . + . ID=Phyra39106;Parent=Phyra39106;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 132745 134007 . + 0 ID=Phyra39106;Parent=Phyra39106;rank=1 scaffold_100 . exon 132745 134007 . + . ID=Phyra39106.1;Parent=Phyra39106;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 128557 130515 . - . ID=Phyra83976;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000038;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 128557 130515 . - . ID=Phyra83976;Parent=Phyra83976;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 128557 130515 . - 0 ID=Phyra83976;Parent=Phyra83976;rank=1 scaffold_100 . exon 128557 130515 . - . ID=Phyra83976.1;Parent=Phyra83976;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 134692 136282 . + . ID=Phyra83978;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000040;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 134692 136282 . + . ID=Phyra83978;Parent=Phyra83978;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 134692 135813 . + 0 ID=Phyra83978;Parent=Phyra83978;rank=1 scaffold_100 . exon 134692 135813 . + . ID=Phyra83978.1;Parent=Phyra83978;constitutive=1;rank=1 scaffold_100 . CDS 135875 136282 . + 0 ID=Phyra83978;Parent=Phyra83978;rank=2 scaffold_100 . repeat_region 138566 138656 . ? . description=dust scaffold_100 . biological_region 139576 139576 0.999 + . logic_name=eponine scaffold_100 . biological_region 139618 139626 0.999 + . logic_name=eponine scaffold_100 . biological_region 139732 139732 0.999 + . logic_name=eponine scaffold_100 ensembl protein_coding_gene 139152 140189 . - . ID=Phyra72178;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_100000008;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 139152 140189 . - . ID=Phyra72178;Parent=Phyra72178;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 139152 140189 . - 0 ID=Phyra72178;Parent=Phyra72178;rank=1 scaffold_100 . exon 139152 140189 . - . ID=Phyra72178.1;Parent=Phyra72178;constitutive=1;rank=1 scaffold_100 . exon 135875 136282 . + . ID=Phyra83978.2;Parent=Phyra83978;constitutive=1;rank=2 scaffold_100 ensembl protein_coding_gene 136341 137354 . - . ID=Phyra83979;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000041;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 136341 137354 . - . ID=Phyra83979;Parent=Phyra83979;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 136341 137354 . - 0 ID=Phyra83979;Parent=Phyra83979;rank=1 scaffold_100 . exon 136341 137354 . - . ID=Phyra83979.1;Parent=Phyra83979;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 140798 141616 . + . ID=Phyra83981;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000043;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 140798 141616 . + . ID=Phyra83981;Parent=Phyra83981;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 140798 140835 . + 0 ID=Phyra83981;Parent=Phyra83981;rank=1 scaffold_100 . exon 140798 140835 . + . ID=Phyra83981.1;Parent=Phyra83981;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_100 . CDS 140973 141423 . + 0 ID=Phyra83981;Parent=Phyra83981;rank=2 scaffold_100 . exon 140973 141423 . + . ID=Phyra83981.2;Parent=Phyra83981;constitutive=1;ensembl_phase=2;rank=2 scaffold_100 . CDS 141614 141616 . + 0 ID=Phyra83981;Parent=Phyra83981;rank=3 scaffold_100 . exon 141614 141616 . + . ID=Phyra83981.3;Parent=Phyra83981;constitutive=1;rank=3 scaffold_100 ensembl protein_coding_gene 143893 144843 . - . ID=Phyra83982;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000044;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 143893 144843 . - . ID=Phyra83982;Parent=Phyra83982;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 143893 144843 . - 0 ID=Phyra83982;Parent=Phyra83982;rank=1 scaffold_100 . exon 143893 144843 . - . ID=Phyra83982.1;Parent=Phyra83982;constitutive=1;rank=1 scaffold_100 . repeat_region 146707 146736 . ? . description=trf scaffold_100 . repeat_region 146811 146858 . ? . description=trf scaffold_100 . repeat_region 147705 147757 . ? . description=trf scaffold_100 . repeat_region 148123 148170 . ? . description=trf scaffold_100 . repeat_region 148245 148268 . ? . description=trf scaffold_100 . repeat_region 148937 148970 . ? . description=trf scaffold_100 . repeat_region 151002 151369 . ? . description=trf scaffold_100 . repeat_region 152084 152257 . ? . description=trf scaffold_100 . repeat_region 152392 152695 . ? . description=trf scaffold_100 . repeat_region 153500 153782 . ? . description=trf scaffold_100 . repeat_region 153510 153714 . ? . description=trf scaffold_100 . repeat_region 153936 154106 . ? . description=trf scaffold_100 . repeat_region 153936 154130 . ? . description=trf scaffold_100 ensembl snoRNA_gene 154298 154381 . - . ID=EPrPRAG00000000195;biotype=snoRNA;description=Small nucleolar RNA snR60/Z5/Z230/Z193/J17 [Source:RFAM%3BAcc:RF00309];external_name=snosnR60_Z15;logic_name=ncrna_eg scaffold_100 ensembl snoRNA 154298 154381 . - . ID=EPrPRAT00000000195;Parent=EPrPRAG00000000195;biotype=snoRNA;logic_name=ncrna_eg scaffold_100 . exon 154298 154381 . - . ID=EPrPRAE00000000195;Parent=EPrPRAT00000000195;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 145356 146003 . + . ID=Phyra83983;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000045;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 145356 146003 . + . ID=Phyra83983;Parent=Phyra83983;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 145356 146003 . + 0 ID=Phyra83983;Parent=Phyra83983;rank=1 scaffold_100 . exon 145356 146003 . + . ID=Phyra83983.1;Parent=Phyra83983;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 146577 147218 . - . ID=Phyra83984;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000046;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 146577 147218 . - . ID=Phyra83984;Parent=Phyra83984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 146577 147218 . - 0 ID=Phyra83984;Parent=Phyra83984;rank=1 scaffold_100 . exon 146577 147218 . - . ID=Phyra83984.1;Parent=Phyra83984;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 147969 148398 . + . ID=Phyra83985;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000047;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 147969 148398 . + . ID=Phyra83985;Parent=Phyra83985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 147969 147984 . + 0 ID=Phyra83985;Parent=Phyra83985;rank=1 scaffold_100 . exon 147969 147984 . + . ID=Phyra83985.1;Parent=Phyra83985;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_100 . CDS 148040 148398 . + 0 ID=Phyra83985;Parent=Phyra83985;rank=2 scaffold_100 . exon 148040 148398 . + . ID=Phyra83985.2;Parent=Phyra83985;constitutive=1;ensembl_phase=1;rank=2 scaffold_100 ensembl protein_coding_gene 148800 149993 . - . ID=Phyra83986;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000048;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 148800 149993 . - . ID=Phyra83986;Parent=Phyra83986;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 148800 149993 . - 0 ID=Phyra83986;Parent=Phyra83986;rank=1 scaffold_100 . exon 148800 149993 . - . ID=Phyra83986.1;Parent=Phyra83986;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 152034 152909 . - . ID=Phyra83988;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000050;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 152034 152909 . - . ID=Phyra83988;Parent=Phyra83988;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 152034 152909 . - 0 ID=Phyra83988;Parent=Phyra83988;rank=1 scaffold_100 . exon 152034 152909 . - . ID=Phyra83988.1;Parent=Phyra83988;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 153285 154154 . + . ID=Phyra83989;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000051;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 153285 154154 . + . ID=Phyra83989;Parent=Phyra83989;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 153285 154154 . + 0 ID=Phyra83989;Parent=Phyra83989;rank=1 scaffold_100 . exon 153285 154154 . + . ID=Phyra83989.1;Parent=Phyra83989;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 150496 151509 . - . ID=Phyra96736;biotype=protein_coding;external_name=C_scaffold_100000009;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 150496 151509 . - . ID=Phyra96736;Parent=Phyra96736;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 150496 150833 . - 0 ID=Phyra96736;Parent=Phyra96736;rank=2 scaffold_100 . exon 150496 150833 . - . ID=Phyra96736.2;Parent=Phyra96736;constitutive=1;ensembl_phase=1;rank=2 scaffold_100 . CDS 150873 151509 . - 0 ID=Phyra96736;Parent=Phyra96736;rank=1 scaffold_100 . exon 150873 151509 . - . ID=Phyra96736.1;Parent=Phyra96736;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_100 . repeat_region 157728 162613 . ? . description=dust scaffold_100 ensembl protein_coding_gene 162932 163537 . + . ID=Phyra83990;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_100000052;logic_name=jgi_phyra1 scaffold_100 ensembl transcript 162932 163537 . + . ID=Phyra83990;Parent=Phyra83990;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_100 . CDS 162932 163537 . + 0 ID=Phyra83990;Parent=Phyra83990;rank=1 scaffold_100 . exon 162932 163537 . + . ID=Phyra83990.1;Parent=Phyra83990;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_98 1 165592 scaffold_98 . biological_region 172 177 0.999 + . logic_name=eponine scaffold_98 . repeat_region 1903 6550 . ? . description=dust scaffold_98 . biological_region 6856 6863 0.999 - . logic_name=eponine scaffold_98 . biological_region 6878 6879 0.999 - . logic_name=eponine scaffold_98 . biological_region 6934 6938 0.999 + . logic_name=eponine scaffold_98 . biological_region 6978 6980 0.999 + . logic_name=eponine scaffold_98 . biological_region 7023 7031 0.999 - . logic_name=eponine scaffold_98 . biological_region 7081 7084 0.999 + . logic_name=eponine scaffold_98 . biological_region 7093 7094 0.999 - . logic_name=eponine scaffold_98 ensembl protein_coding_gene 6616 8650 . + . ID=Phyra83839;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000001;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 6616 8650 . + . ID=Phyra83839;Parent=Phyra83839;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 6616 8441 . + 0 ID=Phyra83839;Parent=Phyra83839;rank=1 scaffold_98 . exon 6616 8441 . + . ID=Phyra83839.1;Parent=Phyra83839;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_98 . CDS 8581 8650 . + 0 ID=Phyra83839;Parent=Phyra83839;rank=2 scaffold_98 . exon 8581 8650 . + . ID=Phyra83839.2;Parent=Phyra83839;constitutive=1;ensembl_phase=2;rank=2 scaffold_98 . repeat_region 17035 17054 . ? . description=trf scaffold_98 . repeat_region 17038 17068 . ? . description=trf scaffold_98 ensembl protein_coding_gene 17335 18625 . + . ID=Phyra54895;biotype=protein_coding;external_name=gwEuk.98.7.1;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 17335 18625 . + . ID=Phyra54895;Parent=Phyra54895;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 17335 17445 . + 0 ID=Phyra54895;Parent=Phyra54895;rank=1 scaffold_98 . exon 17335 17445 . + . ID=Phyra54895.1;Parent=Phyra54895;constitutive=1;rank=1 scaffold_98 . CDS 17519 17755 . + 0 ID=Phyra54895;Parent=Phyra54895;rank=2 scaffold_98 . exon 17519 17755 . + . ID=Phyra54895.2;Parent=Phyra54895;constitutive=1;rank=2 scaffold_98 . CDS 17820 18101 . + 0 ID=Phyra54895;Parent=Phyra54895;rank=3 scaffold_98 . exon 17820 18101 . + . ID=Phyra54895.3;Parent=Phyra54895;constitutive=1;rank=3 scaffold_98 . CDS 18174 18312 . + 0 ID=Phyra54895;Parent=Phyra54895;rank=4 scaffold_98 . exon 18174 18312 . + . ID=Phyra54895.4;Parent=Phyra54895;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_98 . CDS 18384 18625 . + 0 ID=Phyra54895;Parent=Phyra54895;rank=5 scaffold_98 . exon 18384 18625 . + . ID=Phyra54895.5;Parent=Phyra54895;constitutive=1;ensembl_phase=1;rank=5 scaffold_98 ensembl protein_coding_gene 12261 13994 . + . ID=Phyra83841;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000003;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 12261 13994 . + . ID=Phyra83841;Parent=Phyra83841;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 12261 12602 . + 0 ID=Phyra83841;Parent=Phyra83841;rank=1 scaffold_98 . exon 12261 12602 . + . ID=Phyra83841.1;Parent=Phyra83841;constitutive=1;rank=1 scaffold_98 . CDS 12684 13994 . + 0 ID=Phyra83841;Parent=Phyra83841;rank=2 scaffold_98 . exon 12684 13994 . + . ID=Phyra83841.2;Parent=Phyra83841;constitutive=1;rank=2 scaffold_98 ensembl protein_coding_gene 14239 14595 . - . ID=Phyra83842;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000004;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 14239 14595 . - . ID=Phyra83842;Parent=Phyra83842;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 14239 14595 . - 0 ID=Phyra83842;Parent=Phyra83842;rank=1 scaffold_98 . exon 14239 14595 . - . ID=Phyra83842.1;Parent=Phyra83842;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 9825 10596 . - . ID=Phyra96687;biotype=protein_coding;external_name=C_scaffold_98000001;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 9825 10596 . - . ID=Phyra96687;Parent=Phyra96687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 9825 9836 . - 0 ID=Phyra96687;Parent=Phyra96687;rank=3 scaffold_98 . exon 9825 9836 . - . ID=Phyra96687.3;Parent=Phyra96687;constitutive=1;rank=3 scaffold_98 . CDS 9937 10362 . - 0 ID=Phyra96687;Parent=Phyra96687;rank=2 scaffold_98 . exon 9937 10362 . - . ID=Phyra96687.2;Parent=Phyra96687;constitutive=1;rank=2 scaffold_98 . CDS 10420 10596 . - 0 ID=Phyra96687;Parent=Phyra96687;rank=1 scaffold_98 . exon 10420 10596 . - . ID=Phyra96687.1;Parent=Phyra96687;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 10870 11881 . - . ID=Phyra96688;biotype=protein_coding;external_name=C_scaffold_98000002;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 10870 11881 . - . ID=Phyra96688;Parent=Phyra96688;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 10870 11134 . - 0 ID=Phyra96688;Parent=Phyra96688;rank=6 scaffold_98 . exon 10870 11134 . - . ID=Phyra96688.6;Parent=Phyra96688;constitutive=1;ensembl_phase=2;rank=6 scaffold_98 . CDS 11201 11282 . - 0 ID=Phyra96688;Parent=Phyra96688;rank=5 scaffold_98 . exon 11201 11282 . - . ID=Phyra96688.5;Parent=Phyra96688;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_98 . CDS 11360 11410 . - 0 ID=Phyra96688;Parent=Phyra96688;rank=4 scaffold_98 . exon 11360 11410 . - . ID=Phyra96688.4;Parent=Phyra96688;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_98 . CDS 11479 11633 . - 0 ID=Phyra96688;Parent=Phyra96688;rank=3 scaffold_98 . exon 11479 11633 . - . ID=Phyra96688.3;Parent=Phyra96688;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_98 . CDS 11719 11797 . - 0 ID=Phyra96688;Parent=Phyra96688;rank=2 scaffold_98 . exon 11719 11797 . - . ID=Phyra96688.2;Parent=Phyra96688;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_98 . CDS 11869 11881 . - 0 ID=Phyra96688;Parent=Phyra96688;rank=1 scaffold_98 . exon 11869 11881 . - . ID=Phyra96688.1;Parent=Phyra96688;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_98 . repeat_region 20191 20240 . ? . description=dust scaffold_98 . repeat_region 22230 22242 . ? . description=dust scaffold_98 . biological_region 23619 23619 0.999 - . logic_name=eponine scaffold_98 . biological_region 25291 25296 0.999 + . logic_name=eponine scaffold_98 ensembl protein_coding_gene 22351 25084 . - . ID=Phyra83844;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000006;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 22351 25084 . - . ID=Phyra83844;Parent=Phyra83844;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 22351 22791 . - 0 ID=Phyra83844;Parent=Phyra83844;rank=6 scaffold_98 . exon 22351 22791 . - . ID=Phyra83844.6;Parent=Phyra83844;constitutive=1;rank=6 scaffold_98 . CDS 22867 23757 . - 0 ID=Phyra83844;Parent=Phyra83844;rank=5 scaffold_98 . exon 22867 23757 . - . ID=Phyra83844.5;Parent=Phyra83844;constitutive=1;rank=5 scaffold_98 . CDS 24178 24242 . - 0 ID=Phyra83844;Parent=Phyra83844;rank=4 scaffold_98 . exon 24178 24242 . - . ID=Phyra83844.4;Parent=Phyra83844;constitutive=1;ensembl_phase=1;rank=4 scaffold_98 . CDS 24317 24442 . - 0 ID=Phyra83844;Parent=Phyra83844;rank=3 scaffold_98 . exon 24317 24442 . - . ID=Phyra83844.3;Parent=Phyra83844;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_98 . CDS 24515 24669 . - 0 ID=Phyra83844;Parent=Phyra83844;rank=2 scaffold_98 . exon 24515 24669 . - . ID=Phyra83844.2;Parent=Phyra83844;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_98 . CDS 24894 25084 . - 0 ID=Phyra83844;Parent=Phyra83844;rank=1 scaffold_98 . exon 24894 25084 . - . ID=Phyra83844.1;Parent=Phyra83844;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_98 ensembl protein_coding_gene 25197 33958 . + . ID=Phyra83845;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000007;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 25197 33958 . + . ID=Phyra83845;Parent=Phyra83845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 25197 26603 . + 0 ID=Phyra83845;Parent=Phyra83845;rank=1 scaffold_98 . exon 25197 26603 . + . ID=Phyra83845.1;Parent=Phyra83845;constitutive=1;rank=1 scaffold_98 . CDS 26677 26913 . + 0 ID=Phyra83845;Parent=Phyra83845;rank=2 scaffold_98 . exon 26677 26913 . + . ID=Phyra83845.2;Parent=Phyra83845;constitutive=1;rank=2 scaffold_98 . CDS 26978 27259 . + 0 ID=Phyra83845;Parent=Phyra83845;rank=3 scaffold_98 . exon 26978 27259 . + . ID=Phyra83845.3;Parent=Phyra83845;constitutive=1;rank=3 scaffold_98 . CDS 27332 27470 . + 0 ID=Phyra83845;Parent=Phyra83845;rank=4 scaffold_98 . exon 27332 27470 . + . ID=Phyra83845.4;Parent=Phyra83845;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_98 . CDS 27542 27749 . + 0 ID=Phyra83845;Parent=Phyra83845;rank=5 scaffold_98 . exon 27542 27749 . + . ID=Phyra83845.5;Parent=Phyra83845;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_98 . CDS 27886 27955 . + 0 ID=Phyra83845;Parent=Phyra83845;rank=6 scaffold_98 . exon 27886 27955 . + . ID=Phyra83845.6;Parent=Phyra83845;constitutive=1;ensembl_phase=2;rank=6 scaffold_98 . CDS 28121 28382 . + 0 ID=Phyra83845;Parent=Phyra83845;rank=7 scaffold_98 . exon 28121 28382 . + . ID=Phyra83845.7;Parent=Phyra83845;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_98 . CDS 28449 28533 . + 0 ID=Phyra83845;Parent=Phyra83845;rank=8 scaffold_98 . exon 28449 28533 . + . ID=Phyra83845.8;Parent=Phyra83845;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_98 . CDS 28602 28725 . + 0 ID=Phyra83845;Parent=Phyra83845;rank=9 scaffold_98 . exon 28602 28725 . + . ID=Phyra83845.9;Parent=Phyra83845;constitutive=1;ensembl_phase=2;rank=9 scaffold_98 . CDS 28849 29499 . + 0 ID=Phyra83845;Parent=Phyra83845;rank=10 scaffold_98 . exon 28849 29499 . + . ID=Phyra83845.10;Parent=Phyra83845;constitutive=1;rank=10 scaffold_98 . CDS 29567 29704 . + 0 ID=Phyra83845;Parent=Phyra83845;rank=11 scaffold_98 . CDS 29775 30152 . + 0 ID=Phyra83845;Parent=Phyra83845;rank=12 scaffold_98 . CDS 30217 30548 . + 0 ID=Phyra83845;Parent=Phyra83845;rank=13 scaffold_98 . CDS 30621 31073 . + 0 ID=Phyra83845;Parent=Phyra83845;rank=14 scaffold_98 . CDS 31412 32048 . + 0 ID=Phyra83845;Parent=Phyra83845;rank=15 scaffold_98 . CDS 32408 33958 . + 0 ID=Phyra83845;Parent=Phyra83845;rank=16 scaffold_98 ensembl protein_coding_gene 20373 22106 . + . ID=Phyra96690;biotype=protein_coding;external_name=C_scaffold_98000004;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 20373 22106 . + . ID=Phyra96690;Parent=Phyra96690;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 20373 20714 . + 0 ID=Phyra96690;Parent=Phyra96690;rank=1 scaffold_98 . exon 20373 20714 . + . ID=Phyra96690.1;Parent=Phyra96690;constitutive=1;rank=1 scaffold_98 . CDS 20796 21840 . + 0 ID=Phyra96690;Parent=Phyra96690;rank=2 scaffold_98 . exon 20796 21840 . + . ID=Phyra96690.2;Parent=Phyra96690;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_98 . CDS 21913 22106 . + 0 ID=Phyra96690;Parent=Phyra96690;rank=3 scaffold_98 . exon 21913 22106 . + . ID=Phyra96690.3;Parent=Phyra96690;constitutive=1;ensembl_phase=1;rank=3 scaffold_98 . repeat_region 35377 35417 . ? . description=trf scaffold_98 ensembl protein_coding_gene 34528 35227 . + . ID=Phyra54902;biotype=protein_coding;external_name=gwEuk.98.14.1;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 34528 35227 . + . ID=Phyra54902;Parent=Phyra54902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 34528 34686 . + 0 ID=Phyra54902;Parent=Phyra54902;rank=1 scaffold_98 . exon 34528 34686 . + . ID=Phyra54902.1;Parent=Phyra54902;constitutive=1;rank=1 scaffold_98 . CDS 34750 34874 . + 0 ID=Phyra54902;Parent=Phyra54902;rank=2 scaffold_98 . exon 34750 34874 . + . ID=Phyra54902.2;Parent=Phyra54902;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_98 . CDS 34945 35068 . + 0 ID=Phyra54902;Parent=Phyra54902;rank=3 scaffold_98 . exon 34945 35068 . + . ID=Phyra54902.3;Parent=Phyra54902;constitutive=1;ensembl_phase=2;rank=3 scaffold_98 . CDS 35144 35227 . + 0 ID=Phyra54902;Parent=Phyra54902;rank=4 scaffold_98 . exon 35144 35227 . + . ID=Phyra54902.4;Parent=Phyra54902;constitutive=1;rank=4 scaffold_98 . exon 29567 29704 . + . ID=Phyra83845.11;Parent=Phyra83845;constitutive=1;rank=11 scaffold_98 . exon 29775 30152 . + . ID=Phyra83845.12;Parent=Phyra83845;constitutive=1;rank=12 scaffold_98 . exon 30217 30548 . + . ID=Phyra83845.13;Parent=Phyra83845;constitutive=1;ensembl_end_phase=2;rank=13 scaffold_98 . exon 30621 31073 . + . ID=Phyra83845.14;Parent=Phyra83845;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=14 scaffold_98 . exon 31412 32048 . + . ID=Phyra83845.15;Parent=Phyra83845;constitutive=1;ensembl_phase=2;rank=15 scaffold_98 . exon 32408 33958 . + . ID=Phyra83845.16;Parent=Phyra83845;constitutive=1;rank=16 scaffold_98 ensembl protein_coding_gene 34018 34377 . - . ID=Phyra83846;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000008;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 34018 34377 . - . ID=Phyra83846;Parent=Phyra83846;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 34018 34377 . - 0 ID=Phyra83846;Parent=Phyra83846;rank=1 scaffold_98 . exon 34018 34377 . - . ID=Phyra83846.1;Parent=Phyra83846;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 35801 36157 . - . ID=Phyra83848;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000010;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 35801 36157 . - . ID=Phyra83848;Parent=Phyra83848;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 35801 36157 . - 0 ID=Phyra83848;Parent=Phyra83848;rank=1 scaffold_98 . exon 35801 36157 . - . ID=Phyra83848.1;Parent=Phyra83848;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 37381 39478 . + . ID=Phyra83849;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000011;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 37381 39478 . + . ID=Phyra83849;Parent=Phyra83849;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 37381 39050 . + 0 ID=Phyra83849;Parent=Phyra83849;rank=1 scaffold_98 . exon 37381 39050 . + . ID=Phyra83849.1;Parent=Phyra83849;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_98 . CDS 39154 39478 . + 0 ID=Phyra83849;Parent=Phyra83849;rank=2 scaffold_98 . repeat_region 39064 39113 . ? . description=dust scaffold_98 . repeat_region 39901 41060 . ? . description=dust scaffold_98 . repeat_region 41367 41392 . ? . description=dust scaffold_98 . biological_region 43914 43917 0.999 - . logic_name=eponine scaffold_98 . repeat_region 45050 45057 . ? . description=dust scaffold_98 . biological_region 48266 48271 0.999 - . logic_name=eponine scaffold_98 . exon 39154 39478 . + . ID=Phyra83849.2;Parent=Phyra83849;constitutive=1;ensembl_phase=2;rank=2 scaffold_98 ensembl protein_coding_gene 42187 43464 . + . ID=Phyra83850;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000012;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 42187 43464 . + . ID=Phyra83850;Parent=Phyra83850;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 42187 42339 . + 0 ID=Phyra83850;Parent=Phyra83850;rank=1 scaffold_98 . exon 42187 42339 . + . ID=Phyra83850.1;Parent=Phyra83850;constitutive=1;rank=1 scaffold_98 . CDS 42421 42597 . + 0 ID=Phyra83850;Parent=Phyra83850;rank=2 scaffold_98 . exon 42421 42597 . + . ID=Phyra83850.2;Parent=Phyra83850;constitutive=1;rank=2 scaffold_98 . CDS 42672 43082 . + 0 ID=Phyra83850;Parent=Phyra83850;rank=3 scaffold_98 . exon 42672 43082 . + . ID=Phyra83850.3;Parent=Phyra83850;constitutive=1;rank=3 scaffold_98 . CDS 43123 43464 . + 0 ID=Phyra83850;Parent=Phyra83850;rank=4 scaffold_98 . exon 43123 43464 . + . ID=Phyra83850.4;Parent=Phyra83850;constitutive=1;rank=4 scaffold_98 ensembl protein_coding_gene 45442 46161 . - . ID=Phyra83851;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000013;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 45442 46161 . - . ID=Phyra83851;Parent=Phyra83851;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 45442 46161 . - 0 ID=Phyra83851;Parent=Phyra83851;rank=1 scaffold_98 . exon 45442 46161 . - . ID=Phyra83851.1;Parent=Phyra83851;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 47833 48527 . + . ID=Phyra83852;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000014;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 47833 48527 . + . ID=Phyra83852;Parent=Phyra83852;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 47833 47929 . + 0 ID=Phyra83852;Parent=Phyra83852;rank=1 scaffold_98 . exon 47833 47929 . + . ID=Phyra83852.1;Parent=Phyra83852;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_98 . CDS 48109 48527 . + 0 ID=Phyra83852;Parent=Phyra83852;rank=2 scaffold_98 . exon 48109 48527 . + . ID=Phyra83852.2;Parent=Phyra83852;constitutive=1;ensembl_phase=1;rank=2 scaffold_98 ensembl protein_coding_gene 52502 55337 . + . ID=Phyra83853;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000015;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 52502 55337 . + . ID=Phyra83853;Parent=Phyra83853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 52502 54652 . + 0 ID=Phyra83853;Parent=Phyra83853;rank=1 scaffold_98 . exon 52502 54652 . + . ID=Phyra83853.1;Parent=Phyra83853;constitutive=1;rank=1 scaffold_98 . CDS 54693 55337 . + 0 ID=Phyra83853;Parent=Phyra83853;rank=2 scaffold_98 . exon 54693 55337 . + . ID=Phyra83853.2;Parent=Phyra83853;constitutive=1;rank=2 scaffold_98 . repeat_region 58587 60546 . ? . description=dust scaffold_98 . repeat_region 61885 63253 . ? . description=dust scaffold_98 . repeat_region 65098 65147 . ? . description=dust scaffold_98 . repeat_region 66332 66381 . ? . description=dust scaffold_98 . repeat_region 66382 66425 . ? . description=trf scaffold_98 . repeat_region 67578 67585 . ? . description=dust scaffold_98 . repeat_region 67927 67976 . ? . description=dust scaffold_98 ensembl protein_coding_gene 63624 64752 . - . ID=Phyra83854;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000016;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 63624 64752 . - . ID=Phyra83854;Parent=Phyra83854;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 63624 63627 . - 0 ID=Phyra83854;Parent=Phyra83854;rank=2 scaffold_98 . exon 63624 63627 . - . ID=Phyra83854.2;Parent=Phyra83854;constitutive=1;ensembl_phase=2;rank=2 scaffold_98 . CDS 64052 64752 . - 0 ID=Phyra83854;Parent=Phyra83854;rank=1 scaffold_98 . exon 64052 64752 . - . ID=Phyra83854.1;Parent=Phyra83854;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_98 . biological_region 71200 71203 0.999 - . logic_name=eponine scaffold_98 . biological_region 71429 71429 0.999 + . logic_name=eponine scaffold_98 . biological_region 74879 74879 0.999 + . logic_name=eponine scaffold_98 . biological_region 75582 75585 0.999 + . logic_name=eponine scaffold_98 . biological_region 75895 75898 0.999 + . logic_name=eponine scaffold_98 ensembl protein_coding_gene 69256 72261 . - . ID=Phyra83855;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000017;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 69256 72261 . - . ID=Phyra83855;Parent=Phyra83855;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 69256 69399 . - 0 ID=Phyra83855;Parent=Phyra83855;rank=4 scaffold_98 . exon 69256 69399 . - . ID=Phyra83855.4;Parent=Phyra83855;constitutive=1;rank=4 scaffold_98 . CDS 69468 69574 . - 0 ID=Phyra83855;Parent=Phyra83855;rank=3 scaffold_98 . exon 69468 69574 . - . ID=Phyra83855.3;Parent=Phyra83855;constitutive=1;ensembl_phase=1;rank=3 scaffold_98 . CDS 69623 69776 . - 0 ID=Phyra83855;Parent=Phyra83855;rank=2 scaffold_98 . exon 69623 69776 . - . ID=Phyra83855.2;Parent=Phyra83855;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_98 . CDS 71095 72261 . - 0 ID=Phyra83855;Parent=Phyra83855;rank=1 scaffold_98 . exon 71095 72261 . - . ID=Phyra83855.1;Parent=Phyra83855;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 73128 74465 . - . ID=Phyra83857;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000019;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 73128 74465 . - . ID=Phyra83857;Parent=Phyra83857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 73128 73621 . - 0 ID=Phyra83857;Parent=Phyra83857;rank=2 scaffold_98 . exon 73128 73621 . - . ID=Phyra83857.2;Parent=Phyra83857;constitutive=1;ensembl_phase=1;rank=2 scaffold_98 . CDS 73691 74465 . - 0 ID=Phyra83857;Parent=Phyra83857;rank=1 scaffold_98 . exon 73691 74465 . - . ID=Phyra83857.1;Parent=Phyra83857;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_98 ensembl protein_coding_gene 74853 78893 . + . ID=Phyra83858;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000020;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 74853 78893 . + . ID=Phyra83858;Parent=Phyra83858;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 74853 74987 . + 0 ID=Phyra83858;Parent=Phyra83858;rank=1 scaffold_98 . exon 74853 74987 . + . ID=Phyra83858.1;Parent=Phyra83858;constitutive=1;rank=1 scaffold_98 . CDS 75025 75385 . + 0 ID=Phyra83858;Parent=Phyra83858;rank=2 scaffold_98 . exon 75025 75385 . + . ID=Phyra83858.2;Parent=Phyra83858;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_98 . CDS 75475 78893 . + 0 ID=Phyra83858;Parent=Phyra83858;rank=3 scaffold_98 . exon 75475 78893 . + . ID=Phyra83858.3;Parent=Phyra83858;constitutive=1;ensembl_phase=1;rank=3 scaffold_98 ensembl protein_coding_gene 72398 72997 . + . ID=Phyra96699;biotype=protein_coding;external_name=C_scaffold_98000013;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 72398 72997 . + . ID=Phyra96699;Parent=Phyra96699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 72398 72487 . + 0 ID=Phyra96699;Parent=Phyra96699;rank=1 scaffold_98 . exon 72398 72487 . + . ID=Phyra96699.1;Parent=Phyra96699;constitutive=1;rank=1 scaffold_98 . CDS 72558 72607 . + 0 ID=Phyra96699;Parent=Phyra96699;rank=2 scaffold_98 . exon 72558 72607 . + . ID=Phyra96699.2;Parent=Phyra96699;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_98 . CDS 72671 72761 . + 0 ID=Phyra96699;Parent=Phyra96699;rank=3 scaffold_98 . exon 72671 72761 . + . ID=Phyra96699.3;Parent=Phyra96699;constitutive=1;ensembl_phase=2;rank=3 scaffold_98 . CDS 72824 72997 . + 0 ID=Phyra96699;Parent=Phyra96699;rank=4 scaffold_98 . exon 72824 72997 . + . ID=Phyra96699.4;Parent=Phyra96699;constitutive=1;rank=4 scaffold_98 . repeat_region 85426 85475 . ? . description=dust scaffold_98 ensembl protein_coding_gene 79078 80061 . + . ID=Phyra83859;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000021;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 79078 80061 . + . ID=Phyra83859;Parent=Phyra83859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 79078 79245 . + 0 ID=Phyra83859;Parent=Phyra83859;rank=1 scaffold_98 . exon 79078 79245 . + . ID=Phyra83859.1;Parent=Phyra83859;constitutive=1;rank=1 scaffold_98 . CDS 79311 79975 . + 0 ID=Phyra83859;Parent=Phyra83859;rank=2 scaffold_98 . exon 79311 79975 . + . ID=Phyra83859.2;Parent=Phyra83859;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_98 . CDS 80052 80061 . + 0 ID=Phyra83859;Parent=Phyra83859;rank=3 scaffold_98 . exon 80052 80061 . + . ID=Phyra83859.3;Parent=Phyra83859;constitutive=1;ensembl_phase=2;rank=3 scaffold_98 ensembl protein_coding_gene 82401 83511 . - . ID=Phyra83860;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000022;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 82401 83511 . - . ID=Phyra83860;Parent=Phyra83860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 82401 82466 . - 0 ID=Phyra83860;Parent=Phyra83860;rank=2 scaffold_98 . exon 82401 82466 . - . ID=Phyra83860.2;Parent=Phyra83860;constitutive=1;rank=2 scaffold_98 . CDS 82600 83511 . - 0 ID=Phyra83860;Parent=Phyra83860;rank=1 scaffold_98 . exon 82600 83511 . - . ID=Phyra83860.1;Parent=Phyra83860;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 83888 90007 . - . ID=Phyra83861;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000023;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 83888 90007 . - . ID=Phyra83861;Parent=Phyra83861;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 83888 84047 . - 0 ID=Phyra83861;Parent=Phyra83861;rank=5 scaffold_98 . exon 83888 84047 . - . ID=Phyra83861.5;Parent=Phyra83861;constitutive=1;ensembl_phase=2;rank=5 scaffold_98 . CDS 84122 84390 . - 0 ID=Phyra83861;Parent=Phyra83861;rank=4 scaffold_98 . exon 84122 84390 . - . ID=Phyra83861.4;Parent=Phyra83861;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_98 . CDS 84731 85360 . - 0 ID=Phyra83861;Parent=Phyra83861;rank=3 scaffold_98 . exon 84731 85360 . - . ID=Phyra83861.3;Parent=Phyra83861;constitutive=1;rank=3 scaffold_98 . CDS 85526 87695 . - 0 ID=Phyra83861;Parent=Phyra83861;rank=2 scaffold_98 . exon 85526 87695 . - . ID=Phyra83861.2;Parent=Phyra83861;constitutive=1;ensembl_phase=2;rank=2 scaffold_98 . CDS 87720 90007 . - 0 ID=Phyra83861;Parent=Phyra83861;rank=1 scaffold_98 . biological_region 89076 89078 0.999 + . logic_name=eponine scaffold_98 . biological_region 89134 89134 0.999 - . logic_name=eponine scaffold_98 . biological_region 90221 90223 0.999 + . logic_name=eponine scaffold_98 . repeat_region 90354 90431 . ? . description=trf scaffold_98 . repeat_region 90578 90658 . ? . description=trf scaffold_98 . biological_region 91604 91605 0.999 - . logic_name=eponine scaffold_98 . biological_region 91719 91721 0.999 + . logic_name=eponine scaffold_98 . biological_region 92317 92321 0.999 - . logic_name=eponine scaffold_98 . repeat_region 92365 92396 . ? . description=trf scaffold_98 . biological_region 93550 93554 0.999 - . logic_name=eponine scaffold_98 . biological_region 93930 93932 0.999 + . logic_name=eponine scaffold_98 . biological_region 94024 94028 0.999 - . logic_name=eponine scaffold_98 . biological_region 94168 94169 0.999 - . logic_name=eponine scaffold_98 ensembl protein_coding_gene 92521 93534 . + . ID=Phyra54920;biotype=protein_coding;external_name=gwEuk.98.32.1;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 92521 93534 . + . ID=Phyra54920;Parent=Phyra54920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 92521 92652 . + 0 ID=Phyra54920;Parent=Phyra54920;rank=1 scaffold_98 . exon 92521 92652 . + . ID=Phyra54920.1;Parent=Phyra54920;constitutive=1;rank=1 scaffold_98 . CDS 92730 92870 . + 0 ID=Phyra54920;Parent=Phyra54920;rank=2 scaffold_98 . exon 92730 92870 . + . ID=Phyra54920.2;Parent=Phyra54920;constitutive=1;rank=2 scaffold_98 . CDS 92958 93062 . + 0 ID=Phyra54920;Parent=Phyra54920;rank=3 scaffold_98 . exon 92958 93062 . + . ID=Phyra54920.3;Parent=Phyra54920;constitutive=1;rank=3 scaffold_98 . CDS 93132 93311 . + 0 ID=Phyra54920;Parent=Phyra54920;rank=4 scaffold_98 . exon 93132 93311 . + . ID=Phyra54920.4;Parent=Phyra54920;constitutive=1;rank=4 scaffold_98 . CDS 93379 93534 . + 0 ID=Phyra54920;Parent=Phyra54920;rank=5 scaffold_98 . exon 93379 93534 . + . ID=Phyra54920.5;Parent=Phyra54920;constitutive=1;rank=5 scaffold_98 ensembl protein_coding_gene 94165 96255 . + . ID=Phyra54926;biotype=protein_coding;external_name=gwEuk.98.38.1;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 94165 96255 . + . ID=Phyra54926;Parent=Phyra54926;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 94165 94266 . + 0 ID=Phyra54926;Parent=Phyra54926;rank=1 scaffold_98 . exon 94165 94266 . + . ID=Phyra54926.1;Parent=Phyra54926;constitutive=1;rank=1 scaffold_98 . CDS 94337 94588 . + 0 ID=Phyra54926;Parent=Phyra54926;rank=2 scaffold_98 . exon 94337 94588 . + . ID=Phyra54926.2;Parent=Phyra54926;constitutive=1;rank=2 scaffold_98 . CDS 94644 94843 . + 0 ID=Phyra54926;Parent=Phyra54926;rank=3 scaffold_98 . exon 94644 94843 . + . ID=Phyra54926.3;Parent=Phyra54926;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_98 . CDS 94912 95398 . + 0 ID=Phyra54926;Parent=Phyra54926;rank=4 scaffold_98 . exon 94912 95398 . + . ID=Phyra54926.4;Parent=Phyra54926;constitutive=1;ensembl_phase=2;rank=4 scaffold_98 . CDS 95470 95730 . + 0 ID=Phyra54926;Parent=Phyra54926;rank=5 scaffold_98 . exon 95470 95730 . + . ID=Phyra54926.5;Parent=Phyra54926;constitutive=1;rank=5 scaffold_98 . CDS 95806 96255 . + 0 ID=Phyra54926;Parent=Phyra54926;rank=6 scaffold_98 . exon 95806 96255 . + . ID=Phyra54926.6;Parent=Phyra54926;constitutive=1;rank=6 scaffold_98 . exon 87720 90007 . - . ID=Phyra83861.1;Parent=Phyra83861;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_98 ensembl protein_coding_gene 90248 92312 . - . ID=Phyra83862;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000024;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 90248 92312 . - . ID=Phyra83862;Parent=Phyra83862;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 90248 91098 . - 0 ID=Phyra83862;Parent=Phyra83862;rank=4 scaffold_98 . exon 90248 91098 . - . ID=Phyra83862.4;Parent=Phyra83862;constitutive=1;ensembl_phase=1;rank=4 scaffold_98 . CDS 91159 91337 . - 0 ID=Phyra83862;Parent=Phyra83862;rank=3 scaffold_98 . exon 91159 91337 . - . ID=Phyra83862.3;Parent=Phyra83862;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_98 . CDS 91446 92233 . - 0 ID=Phyra83862;Parent=Phyra83862;rank=2 scaffold_98 . exon 91446 92233 . - . ID=Phyra83862.2;Parent=Phyra83862;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_98 . CDS 92253 92312 . - 0 ID=Phyra83862;Parent=Phyra83862;rank=1 scaffold_98 . exon 92253 92312 . - . ID=Phyra83862.1;Parent=Phyra83862;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 96465 100180 . + . ID=Phyra83865;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000027;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 96465 100180 . + . ID=Phyra83865;Parent=Phyra83865;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 96465 97619 . + 0 ID=Phyra83865;Parent=Phyra83865;rank=1 scaffold_98 . exon 96465 97619 . + . ID=Phyra83865.1;Parent=Phyra83865;constitutive=1;rank=1 scaffold_98 . CDS 97694 98444 . + 0 ID=Phyra83865;Parent=Phyra83865;rank=2 scaffold_98 . CDS 98513 98898 . + 0 ID=Phyra83865;Parent=Phyra83865;rank=3 scaffold_98 . CDS 99044 99656 . + 0 ID=Phyra83865;Parent=Phyra83865;rank=4 scaffold_98 . CDS 99726 99863 . + 0 ID=Phyra83865;Parent=Phyra83865;rank=5 scaffold_98 . CDS 99936 100180 . + 0 ID=Phyra83865;Parent=Phyra83865;rank=6 scaffold_98 ensembl protein_coding_gene 105454 106605 . + . ID=Phyra72163;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_98000002;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 105454 106605 . + . ID=Phyra72163;Parent=Phyra72163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 105454 106605 . + 0 ID=Phyra72163;Parent=Phyra72163;rank=1 scaffold_98 . exon 105454 106605 . + . ID=Phyra72163.1;Parent=Phyra72163;constitutive=1;rank=1 scaffold_98 . exon 97694 98444 . + . ID=Phyra83865.2;Parent=Phyra83865;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_98 . exon 98513 98898 . + . ID=Phyra83865.3;Parent=Phyra83865;constitutive=1;ensembl_phase=1;rank=3 scaffold_98 . exon 99044 99656 . + . ID=Phyra83865.4;Parent=Phyra83865;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_98 . exon 99726 99863 . + . ID=Phyra83865.5;Parent=Phyra83865;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_98 . exon 99936 100180 . + . ID=Phyra83865.6;Parent=Phyra83865;constitutive=1;ensembl_phase=1;rank=6 scaffold_98 ensembl protein_coding_gene 104434 105234 . - . ID=Phyra83868;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000030;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 104434 105234 . - . ID=Phyra83868;Parent=Phyra83868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 104434 105234 . - 0 ID=Phyra83868;Parent=Phyra83868;rank=1 scaffold_98 . exon 104434 105234 . - . ID=Phyra83868.1;Parent=Phyra83868;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 100281 103032 . - . ID=Phyra96703;biotype=protein_coding;external_name=C_scaffold_98000017;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 100281 103032 . - . ID=Phyra96703;Parent=Phyra96703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 100281 100329 . - 0 ID=Phyra96703;Parent=Phyra96703;rank=9 scaffold_98 . exon 100281 100329 . - . ID=Phyra96703.9;Parent=Phyra96703;constitutive=1;ensembl_phase=2;rank=9 scaffold_98 . CDS 100394 100569 . - 0 ID=Phyra96703;Parent=Phyra96703;rank=8 scaffold_98 . exon 100394 100569 . - . ID=Phyra96703.8;Parent=Phyra96703;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_98 . CDS 100631 100679 . - 0 ID=Phyra96703;Parent=Phyra96703;rank=7 scaffold_98 . exon 100631 100679 . - . ID=Phyra96703.7;Parent=Phyra96703;constitutive=1;ensembl_phase=2;rank=7 scaffold_98 . CDS 100743 100819 . - 0 ID=Phyra96703;Parent=Phyra96703;rank=6 scaffold_98 . exon 100743 100819 . - . ID=Phyra96703.6;Parent=Phyra96703;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_98 . CDS 100883 101024 . - 0 ID=Phyra96703;Parent=Phyra96703;rank=5 scaffold_98 . exon 100883 101024 . - . ID=Phyra96703.5;Parent=Phyra96703;constitutive=1;ensembl_phase=2;rank=5 scaffold_98 . CDS 101096 101229 . - 0 ID=Phyra96703;Parent=Phyra96703;rank=4 scaffold_98 . exon 101096 101229 . - . ID=Phyra96703.4;Parent=Phyra96703;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_98 . CDS 101293 101439 . - 0 ID=Phyra96703;Parent=Phyra96703;rank=3 scaffold_98 . exon 101293 101439 . - . ID=Phyra96703.3;Parent=Phyra96703;constitutive=1;rank=3 scaffold_98 . CDS 101668 102394 . - 0 ID=Phyra96703;Parent=Phyra96703;rank=2 scaffold_98 . exon 101668 102394 . - . ID=Phyra96703.2;Parent=Phyra96703;constitutive=1;ensembl_phase=2;rank=2 scaffold_98 . CDS 102518 103032 . - 0 ID=Phyra96703;Parent=Phyra96703;rank=1 scaffold_98 . exon 102518 103032 . - . ID=Phyra96703.1;Parent=Phyra96703;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_98 ensembl protein_coding_gene 106918 109372 . - . ID=Phyra96705;biotype=protein_coding;external_name=C_scaffold_98000019;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 106918 109372 . - . ID=Phyra96705;Parent=Phyra96705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 106918 107474 . - 0 ID=Phyra96705;Parent=Phyra96705;rank=7 scaffold_98 . exon 106918 107474 . - . ID=Phyra96705.7;Parent=Phyra96705;constitutive=1;ensembl_phase=1;rank=7 scaffold_98 . CDS 107553 107853 . - 0 ID=Phyra96705;Parent=Phyra96705;rank=6 scaffold_98 . CDS 107878 108103 . - 0 ID=Phyra96705;Parent=Phyra96705;rank=5 scaffold_98 . CDS 108360 108684 . - 0 ID=Phyra96705;Parent=Phyra96705;rank=4 scaffold_98 . CDS 108712 108828 . - 0 ID=Phyra96705;Parent=Phyra96705;rank=3 scaffold_98 . CDS 108970 109162 . - 0 ID=Phyra96705;Parent=Phyra96705;rank=2 scaffold_98 . CDS 109199 109372 . - 0 ID=Phyra96705;Parent=Phyra96705;rank=1 scaffold_98 . biological_region 107907 107909 0.999 - . logic_name=eponine scaffold_98 . biological_region 108000 108002 0.999 - . logic_name=eponine scaffold_98 . biological_region 109300 109302 0.999 + . logic_name=eponine scaffold_98 . repeat_region 110163 110191 . ? . description=trf scaffold_98 . biological_region 110462 110463 0.999 - . logic_name=eponine scaffold_98 . biological_region 112838 112841 0.999 - . logic_name=eponine scaffold_98 . biological_region 116081 116089 0.999 + . logic_name=eponine scaffold_98 . biological_region 116152 116156 0.999 + . logic_name=eponine scaffold_98 . biological_region 116168 116173 0.999 + . logic_name=eponine scaffold_98 . biological_region 116180 116185 0.999 + . logic_name=eponine scaffold_98 . biological_region 116211 116212 0.999 - . logic_name=eponine scaffold_98 . biological_region 116377 116378 0.999 + . logic_name=eponine scaffold_98 . repeat_region 116433 116476 . ? . description=trf scaffold_98 ensembl protein_coding_gene 115345 117148 . - . ID=Phyra54939;biotype=protein_coding;external_name=gwEuk.98.51.1;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 115345 117148 . - . ID=Phyra54939;Parent=Phyra54939;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 115345 115444 . - 0 ID=Phyra54939;Parent=Phyra54939;rank=2 scaffold_98 . exon 115345 115444 . - . ID=Phyra54939.2;Parent=Phyra54939;constitutive=1;ensembl_phase=2;rank=2 scaffold_98 . CDS 115515 117148 . - 0 ID=Phyra54939;Parent=Phyra54939;rank=1 scaffold_98 . exon 115515 117148 . - . ID=Phyra54939.1;Parent=Phyra54939;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_98 ensembl protein_coding_gene 111049 115054 . + . ID=Phyra83872;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000034;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 111049 115054 . + . ID=Phyra83872;Parent=Phyra83872;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 111049 111123 . + 0 ID=Phyra83872;Parent=Phyra83872;rank=1 scaffold_98 . exon 111049 111123 . + . ID=Phyra83872.1;Parent=Phyra83872;constitutive=1;rank=1 scaffold_98 . CDS 111257 111810 . + 0 ID=Phyra83872;Parent=Phyra83872;rank=2 scaffold_98 . exon 111257 111810 . + . ID=Phyra83872.2;Parent=Phyra83872;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_98 . CDS 111886 112021 . + 0 ID=Phyra83872;Parent=Phyra83872;rank=3 scaffold_98 . exon 111886 112021 . + . ID=Phyra83872.3;Parent=Phyra83872;constitutive=1;ensembl_phase=2;rank=3 scaffold_98 . CDS 112094 112564 . + 0 ID=Phyra83872;Parent=Phyra83872;rank=4 scaffold_98 . exon 112094 112564 . + . ID=Phyra83872.4;Parent=Phyra83872;constitutive=1;rank=4 scaffold_98 . CDS 112720 112830 . + 0 ID=Phyra83872;Parent=Phyra83872;rank=5 scaffold_98 . exon 112720 112830 . + . ID=Phyra83872.5;Parent=Phyra83872;constitutive=1;rank=5 scaffold_98 . CDS 113067 113465 . + 0 ID=Phyra83872;Parent=Phyra83872;rank=6 scaffold_98 . exon 113067 113465 . + . ID=Phyra83872.6;Parent=Phyra83872;constitutive=1;rank=6 scaffold_98 . CDS 113534 113748 . + 0 ID=Phyra83872;Parent=Phyra83872;rank=7 scaffold_98 . exon 113534 113748 . + . ID=Phyra83872.7;Parent=Phyra83872;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_98 . CDS 113821 113930 . + 0 ID=Phyra83872;Parent=Phyra83872;rank=8 scaffold_98 . exon 113821 113930 . + . ID=Phyra83872.8;Parent=Phyra83872;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_98 . CDS 114000 115054 . + 0 ID=Phyra83872;Parent=Phyra83872;rank=9 scaffold_98 . exon 114000 115054 . + . ID=Phyra83872.9;Parent=Phyra83872;constitutive=1;ensembl_phase=1;rank=9 scaffold_98 . exon 107553 107853 . - . ID=Phyra96705.6;Parent=Phyra96705;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_98 . exon 107878 108103 . - . ID=Phyra96705.5;Parent=Phyra96705;constitutive=1;ensembl_phase=2;rank=5 scaffold_98 . exon 108360 108684 . - . ID=Phyra96705.4;Parent=Phyra96705;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_98 . exon 108712 108828 . - . ID=Phyra96705.3;Parent=Phyra96705;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_98 . exon 108970 109162 . - . ID=Phyra96705.2;Parent=Phyra96705;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_98 . exon 109199 109372 . - . ID=Phyra96705.1;Parent=Phyra96705;constitutive=1;rank=1 scaffold_98 . repeat_region 124845 139477 . ? . description=dust scaffold_98 ensembl protein_coding_gene 117598 119530 . - . ID=Phyra83874;biotype=protein_coding;description=Cell 5A endo-1%2C4-betaglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q0PN00];external_name=EGL-V.1;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 117598 119530 . - . ID=Phyra83874;Parent=Phyra83874;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 117598 118680 . - 0 ID=Phyra83874;Parent=Phyra83874;rank=4 scaffold_98 . exon 117598 118680 . - . ID=Phyra83874.4;Parent=Phyra83874;constitutive=1;rank=4 scaffold_98 . CDS 118740 118918 . - 0 ID=Phyra83874;Parent=Phyra83874;rank=3 scaffold_98 . exon 118740 118918 . - . ID=Phyra83874.3;Parent=Phyra83874;constitutive=1;ensembl_phase=1;rank=3 scaffold_98 . CDS 118968 119190 . - 0 ID=Phyra83874;Parent=Phyra83874;rank=2 scaffold_98 . exon 118968 119190 . - . ID=Phyra83874.2;Parent=Phyra83874;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_98 . CDS 119264 119530 . - 0 ID=Phyra83874;Parent=Phyra83874;rank=1 scaffold_98 . exon 119264 119530 . - . ID=Phyra83874.1;Parent=Phyra83874;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 119902 121602 . - . ID=Phyra83875;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000037;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 119902 121602 . - . ID=Phyra83875;Parent=Phyra83875;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 119902 121602 . - 0 ID=Phyra83875;Parent=Phyra83875;rank=1 scaffold_98 . exon 119902 121602 . - . ID=Phyra83875.1;Parent=Phyra83875;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 122056 123808 . - . ID=Phyra83876;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_98000038;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 122056 123808 . - . ID=Phyra83876;Parent=Phyra83876;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 122056 122618 . - 0 ID=Phyra83876;Parent=Phyra83876;rank=3 scaffold_98 . exon 122056 122618 . - . ID=Phyra83876.3;Parent=Phyra83876;constitutive=1;ensembl_phase=1;rank=3 scaffold_98 . CDS 122923 123001 . - 0 ID=Phyra83876;Parent=Phyra83876;rank=2 scaffold_98 . exon 122923 123001 . - . ID=Phyra83876.2;Parent=Phyra83876;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_98 . CDS 123080 123808 . - 0 ID=Phyra83876;Parent=Phyra83876;rank=1 scaffold_98 . exon 123080 123808 . - . ID=Phyra83876.1;Parent=Phyra83876;constitutive=1;rank=1 scaffold_98 . repeat_region 124845 139477 . ? . description=dust scaffold_98 . repeat_region 139708 139755 . ? . description=trf scaffold_98 . repeat_region 139708 139755 . ? . description=dust scaffold_98 . repeat_region 140083 140090 . ? . description=dust scaffold_98 . repeat_region 142431 143373 . ? . description=dust scaffold_98 . repeat_region 143792 143803 . ? . description=dust scaffold_98 . repeat_region 144125 144168 . ? . description=trf scaffold_98 . repeat_region 145094 146816 . ? . description=dust scaffold_98 ensembl protein_coding_gene 140378 141100 . + . ID=Phyra72165;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_98000004;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 140378 141100 . + . ID=Phyra72165;Parent=Phyra72165;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 140378 141100 . + 0 ID=Phyra72165;Parent=Phyra72165;rank=1 scaffold_98 . exon 140378 141100 . + . ID=Phyra72165.1;Parent=Phyra72165;constitutive=1;rank=1 scaffold_98 . biological_region 148946 148950 0.999 + . logic_name=eponine scaffold_98 . biological_region 148997 149002 0.999 + . logic_name=eponine scaffold_98 . biological_region 149026 149026 0.999 - . logic_name=eponine scaffold_98 . biological_region 149063 149064 0.999 - . logic_name=eponine scaffold_98 . biological_region 149099 149104 0.999 + . logic_name=eponine scaffold_98 . repeat_region 150817 152173 . + . description=GypsyPi-1c_I-int scaffold_98 . biological_region 152843 152846 0.999 - . logic_name=eponine scaffold_98 . biological_region 152885 152886 0.999 - . logic_name=eponine scaffold_98 ensembl protein_coding_gene 150904 151953 . + . ID=Phyra72166;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_98000005;logic_name=jgi_phyra1 scaffold_98 ensembl transcript 150904 151953 . + . ID=Phyra72166;Parent=Phyra72166;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_98 . CDS 150904 151953 . + 0 ID=Phyra72166;Parent=Phyra72166;rank=1 scaffold_98 . exon 150904 151953 . + . ID=Phyra72166.1;Parent=Phyra72166;constitutive=1;rank=1 scaffold_98 . repeat_region 156718 156727 . ? . description=dust scaffold_98 . repeat_region 156871 156958 . ? . description=trf scaffold_98 . repeat_region 156871 156958 . ? . description=dust scaffold_98 . repeat_region 156871 156958 . + . description=(TG)n scaffold_98 . repeat_region 159552 159567 . ? . description=dust scaffold_98 . repeat_region 161378 161387 . ? . description=dust scaffold_98 . repeat_region 162031 162053 . ? . description=trf scaffold_98 . repeat_region 162031 162053 . ? . description=dust scaffold_98 . repeat_region 162927 164541 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_99 1 165765 scaffold_99 . repeat_region 983 1014 . ? . description=trf scaffold_99 . repeat_region 1436 1499 . ? . description=trf scaffold_99 . repeat_region 1441 1499 . ? . description=dust scaffold_99 . biological_region 1513 1515 0.999 - . logic_name=eponine scaffold_99 . repeat_region 7387 7408 . ? . description=trf scaffold_99 . biological_region 7859 7859 0.999 + . logic_name=eponine scaffold_99 ensembl protein_coding_gene 46 1045 . - . ID=Phyra83879;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000001;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 46 1045 . - . ID=Phyra83879;Parent=Phyra83879;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 46 785 . - 0 ID=Phyra83879;Parent=Phyra83879;rank=3 scaffold_99 . exon 46 785 . - . ID=Phyra83879.3;Parent=Phyra83879;constitutive=1;ensembl_phase=1;rank=3 scaffold_99 . CDS 815 912 . - 0 ID=Phyra83879;Parent=Phyra83879;rank=2 scaffold_99 . exon 815 912 . - . ID=Phyra83879.2;Parent=Phyra83879;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_99 . CDS 960 1045 . - 0 ID=Phyra83879;Parent=Phyra83879;rank=1 scaffold_99 . exon 960 1045 . - . ID=Phyra83879.1;Parent=Phyra83879;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_99 ensembl protein_coding_gene 2205 3668 . - . ID=Phyra83880;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000002;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 2205 3668 . - . ID=Phyra83880;Parent=Phyra83880;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 2205 2325 . - 0 ID=Phyra83880;Parent=Phyra83880;rank=8 scaffold_99 . exon 2205 2325 . - . ID=Phyra83880.8;Parent=Phyra83880;constitutive=1;ensembl_phase=2;rank=8 scaffold_99 . CDS 2400 2461 . - 0 ID=Phyra83880;Parent=Phyra83880;rank=7 scaffold_99 . exon 2400 2461 . - . ID=Phyra83880.7;Parent=Phyra83880;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_99 . CDS 2521 2760 . - 0 ID=Phyra83880;Parent=Phyra83880;rank=6 scaffold_99 . exon 2521 2760 . - . ID=Phyra83880.6;Parent=Phyra83880;constitutive=1;rank=6 scaffold_99 . CDS 2824 2886 . - 0 ID=Phyra83880;Parent=Phyra83880;rank=5 scaffold_99 . exon 2824 2886 . - . ID=Phyra83880.5;Parent=Phyra83880;constitutive=1;rank=5 scaffold_99 . CDS 2955 3070 . - 0 ID=Phyra83880;Parent=Phyra83880;rank=4 scaffold_99 . exon 2955 3070 . - . ID=Phyra83880.4;Parent=Phyra83880;constitutive=1;ensembl_phase=1;rank=4 scaffold_99 . CDS 3139 3209 . - 0 ID=Phyra83880;Parent=Phyra83880;rank=3 scaffold_99 . exon 3139 3209 . - . ID=Phyra83880.3;Parent=Phyra83880;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_99 . CDS 3450 3589 . - 0 ID=Phyra83880;Parent=Phyra83880;rank=2 scaffold_99 . exon 3450 3589 . - . ID=Phyra83880.2;Parent=Phyra83880;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_99 . CDS 3615 3668 . - 0 ID=Phyra83880;Parent=Phyra83880;rank=1 scaffold_99 . exon 3615 3668 . - . ID=Phyra83880.1;Parent=Phyra83880;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 7910 10961 . + . ID=Phyra96707;biotype=protein_coding;external_name=C_scaffold_99000001;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 7910 10961 . + . ID=Phyra96707;Parent=Phyra96707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 7910 7966 . + 0 ID=Phyra96707;Parent=Phyra96707;rank=1 scaffold_99 . exon 7910 7966 . + . ID=Phyra96707.1;Parent=Phyra96707;constitutive=1;rank=1 scaffold_99 . CDS 8085 9564 . + 0 ID=Phyra96707;Parent=Phyra96707;rank=2 scaffold_99 . exon 8085 9564 . + . ID=Phyra96707.2;Parent=Phyra96707;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_99 . CDS 9865 10961 . + 0 ID=Phyra96707;Parent=Phyra96707;rank=3 scaffold_99 ensembl protein_coding_gene 12277 13172 . + . ID=Phyra54950;biotype=protein_coding;external_name=gwEuk.99.1.1;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 12277 13172 . + . ID=Phyra54950;Parent=Phyra54950;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 12277 12821 . + 0 ID=Phyra54950;Parent=Phyra54950;rank=1 scaffold_99 . exon 12277 12821 . + . ID=Phyra54950.1;Parent=Phyra54950;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_99 . CDS 12896 13172 . + 0 ID=Phyra54950;Parent=Phyra54950;rank=2 scaffold_99 . exon 12896 13172 . + . ID=Phyra54950.2;Parent=Phyra54950;constitutive=1;ensembl_phase=2;rank=2 scaffold_99 ensembl protein_coding_gene 11131 12019 . - . ID=Phyra83882;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000004;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 11131 12019 . - . ID=Phyra83882;Parent=Phyra83882;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 11131 11148 . - 0 ID=Phyra83882;Parent=Phyra83882;rank=6 scaffold_99 . exon 11131 11148 . - . ID=Phyra83882.6;Parent=Phyra83882;constitutive=1;rank=6 scaffold_99 . CDS 11230 11319 . - 0 ID=Phyra83882;Parent=Phyra83882;rank=5 scaffold_99 . exon 11230 11319 . - . ID=Phyra83882.5;Parent=Phyra83882;constitutive=1;rank=5 scaffold_99 . CDS 11406 11447 . - 0 ID=Phyra83882;Parent=Phyra83882;rank=4 scaffold_99 . exon 11406 11447 . - . ID=Phyra83882.4;Parent=Phyra83882;constitutive=1;rank=4 scaffold_99 . CDS 11555 11623 . - 0 ID=Phyra83882;Parent=Phyra83882;rank=3 scaffold_99 . exon 11555 11623 . - . ID=Phyra83882.3;Parent=Phyra83882;constitutive=1;rank=3 scaffold_99 . CDS 11687 11738 . - 0 ID=Phyra83882;Parent=Phyra83882;rank=2 scaffold_99 . exon 11687 11738 . - . ID=Phyra83882.2;Parent=Phyra83882;constitutive=1;ensembl_phase=2;rank=2 scaffold_99 . CDS 11808 12019 . - 0 ID=Phyra83882;Parent=Phyra83882;rank=1 scaffold_99 . exon 11808 12019 . - . ID=Phyra83882.1;Parent=Phyra83882;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_99 . exon 9865 10961 . + . ID=Phyra96707.3;Parent=Phyra96707;constitutive=1;ensembl_phase=1;rank=3 scaffold_99 ensembl protein_coding_gene 14444 18607 . - . ID=Phyra96710;biotype=protein_coding;external_name=C_scaffold_99000004;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 14444 18607 . - . ID=Phyra96710;Parent=Phyra96710;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 14444 14463 . - 0 ID=Phyra96710;Parent=Phyra96710;rank=12 scaffold_99 . exon 14444 14463 . - . ID=Phyra96710.12;Parent=Phyra96710;constitutive=1;ensembl_phase=1;rank=12 scaffold_99 . CDS 14656 14836 . - 0 ID=Phyra96710;Parent=Phyra96710;rank=11 scaffold_99 . exon 14656 14836 . - . ID=Phyra96710.11;Parent=Phyra96710;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_99 . CDS 14920 15071 . - 0 ID=Phyra96710;Parent=Phyra96710;rank=10 scaffold_99 . exon 14920 15071 . - . ID=Phyra96710.10;Parent=Phyra96710;constitutive=1;ensembl_phase=1;rank=10 scaffold_99 . CDS 15162 15481 . - 0 ID=Phyra96710;Parent=Phyra96710;rank=9 scaffold_99 . exon 15162 15481 . - . ID=Phyra96710.9;Parent=Phyra96710;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_99 . CDS 15614 16160 . - 0 ID=Phyra96710;Parent=Phyra96710;rank=8 scaffold_99 . exon 15614 16160 . - . ID=Phyra96710.8;Parent=Phyra96710;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_99 . CDS 16226 16429 . - 0 ID=Phyra96710;Parent=Phyra96710;rank=7 scaffold_99 . exon 16226 16429 . - . ID=Phyra96710.7;Parent=Phyra96710;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_99 . CDS 16494 16609 . - 0 ID=Phyra96710;Parent=Phyra96710;rank=6 scaffold_99 . exon 16494 16609 . - . ID=Phyra96710.6;Parent=Phyra96710;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_99 . CDS 16648 16705 . - 0 ID=Phyra96710;Parent=Phyra96710;rank=5 scaffold_99 . exon 16648 16705 . - . ID=Phyra96710.5;Parent=Phyra96710;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_99 . CDS 16818 17020 . - 0 ID=Phyra96710;Parent=Phyra96710;rank=4 scaffold_99 . exon 16818 17020 . - . ID=Phyra96710.4;Parent=Phyra96710;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_99 . CDS 17094 17325 . - 0 ID=Phyra96710;Parent=Phyra96710;rank=3 scaffold_99 . exon 17094 17325 . - . ID=Phyra96710.3;Parent=Phyra96710;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_99 . CDS 17356 18271 . - 0 ID=Phyra96710;Parent=Phyra96710;rank=2 scaffold_99 . exon 17356 18271 . - . ID=Phyra96710.2;Parent=Phyra96710;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_99 . CDS 18548 18607 . - 0 ID=Phyra96710;Parent=Phyra96710;rank=1 scaffold_99 . exon 18548 18607 . - . ID=Phyra96710.1;Parent=Phyra96710;constitutive=1;rank=1 scaffold_99 . biological_region 22723 22725 0.999 + . logic_name=eponine scaffold_99 . biological_region 22796 22796 0.999 + . logic_name=eponine scaffold_99 . biological_region 23196 23197 0.999 + . logic_name=eponine scaffold_99 . biological_region 23536 23539 0.999 - . logic_name=eponine scaffold_99 . biological_region 23611 23612 0.999 - . logic_name=eponine scaffold_99 . biological_region 23710 23712 0.999 + . logic_name=eponine scaffold_99 . biological_region 23960 23960 0.999 - . logic_name=eponine scaffold_99 . biological_region 28363 28365 0.999 - . logic_name=eponine scaffold_99 ensembl protein_coding_gene 22472 24016 . + . ID=Phyra72167;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_99000001;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 22472 24016 . + . ID=Phyra72167;Parent=Phyra72167;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 22472 22540 . + 0 ID=Phyra72167;Parent=Phyra72167;rank=1 scaffold_99 . exon 22472 22540 . + . ID=Phyra72167.1;Parent=Phyra72167;constitutive=1;rank=1 scaffold_99 . CDS 22574 24016 . + 0 ID=Phyra72167;Parent=Phyra72167;rank=2 scaffold_99 . exon 22574 24016 . + . ID=Phyra72167.2;Parent=Phyra72167;constitutive=1;rank=2 scaffold_99 ensembl protein_coding_gene 27679 28716 . - . ID=Phyra72168;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_99000002;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 27679 28716 . - . ID=Phyra72168;Parent=Phyra72168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 27679 28716 . - 0 ID=Phyra72168;Parent=Phyra72168;rank=1 scaffold_99 . exon 27679 28716 . - . ID=Phyra72168.1;Parent=Phyra72168;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 21403 21981 . + . ID=Phyra83885;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000007;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 21403 21981 . + . ID=Phyra83885;Parent=Phyra83885;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 21403 21981 . + 0 ID=Phyra83885;Parent=Phyra83885;rank=1 scaffold_99 . exon 21403 21981 . + . ID=Phyra83885.1;Parent=Phyra83885;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 24143 25975 . + . ID=Phyra83887;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000009;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 24143 25975 . + . ID=Phyra83887;Parent=Phyra83887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 24143 25975 . + 0 ID=Phyra83887;Parent=Phyra83887;rank=1 scaffold_99 . exon 24143 25975 . + . ID=Phyra83887.1;Parent=Phyra83887;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 26212 27291 . - . ID=Phyra83888;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000010;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 26212 27291 . - . ID=Phyra83888;Parent=Phyra83888;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 26212 27291 . - 0 ID=Phyra83888;Parent=Phyra83888;rank=1 scaffold_99 . exon 26212 27291 . - . ID=Phyra83888.1;Parent=Phyra83888;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 29076 30595 . - . ID=Phyra83890;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000012;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 29076 30595 . - . ID=Phyra83890;Parent=Phyra83890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 29076 29583 . - 0 ID=Phyra83890;Parent=Phyra83890;rank=5 scaffold_99 . exon 29076 29583 . - . ID=Phyra83890.5;Parent=Phyra83890;constitutive=1;ensembl_phase=2;rank=5 scaffold_99 . CDS 29666 29781 . - 0 ID=Phyra83890;Parent=Phyra83890;rank=4 scaffold_99 . CDS 29853 30069 . - 0 ID=Phyra83890;Parent=Phyra83890;rank=3 scaffold_99 . CDS 30134 30307 . - 0 ID=Phyra83890;Parent=Phyra83890;rank=2 scaffold_99 . CDS 30399 30595 . - 0 ID=Phyra83890;Parent=Phyra83890;rank=1 scaffold_99 . repeat_region 32848 32855 . ? . description=dust scaffold_99 . repeat_region 34679 34686 . ? . description=dust scaffold_99 . repeat_region 34808 34892 . ? . description=trf scaffold_99 . exon 29666 29781 . - . ID=Phyra83890.4;Parent=Phyra83890;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_99 . exon 29853 30069 . - . ID=Phyra83890.3;Parent=Phyra83890;constitutive=1;ensembl_phase=2;rank=3 scaffold_99 . exon 30134 30307 . - . ID=Phyra83890.2;Parent=Phyra83890;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_99 . exon 30399 30595 . - . ID=Phyra83890.1;Parent=Phyra83890;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_99 ensembl protein_coding_gene 30964 32796 . + . ID=Phyra83891;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000013;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 30964 32796 . + . ID=Phyra83891;Parent=Phyra83891;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 30964 31119 . + 0 ID=Phyra83891;Parent=Phyra83891;rank=1 scaffold_99 . exon 30964 31119 . + . ID=Phyra83891.1;Parent=Phyra83891;constitutive=1;rank=1 scaffold_99 . CDS 31190 31285 . + 0 ID=Phyra83891;Parent=Phyra83891;rank=2 scaffold_99 . exon 31190 31285 . + . ID=Phyra83891.2;Parent=Phyra83891;constitutive=1;rank=2 scaffold_99 . CDS 31376 31497 . + 0 ID=Phyra83891;Parent=Phyra83891;rank=3 scaffold_99 . exon 31376 31497 . + . ID=Phyra83891.3;Parent=Phyra83891;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_99 . CDS 31566 31632 . + 0 ID=Phyra83891;Parent=Phyra83891;rank=4 scaffold_99 . exon 31566 31632 . + . ID=Phyra83891.4;Parent=Phyra83891;constitutive=1;ensembl_phase=2;rank=4 scaffold_99 . CDS 31709 31813 . + 0 ID=Phyra83891;Parent=Phyra83891;rank=5 scaffold_99 . exon 31709 31813 . + . ID=Phyra83891.5;Parent=Phyra83891;constitutive=1;rank=5 scaffold_99 . CDS 31879 32796 . + 0 ID=Phyra83891;Parent=Phyra83891;rank=6 scaffold_99 . exon 31879 32796 . + . ID=Phyra83891.6;Parent=Phyra83891;constitutive=1;rank=6 scaffold_99 ensembl protein_coding_gene 33453 34410 . - . ID=Phyra83892;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000014;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 33453 34410 . - . ID=Phyra83892;Parent=Phyra83892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 33453 33595 . - 0 ID=Phyra83892;Parent=Phyra83892;rank=5 scaffold_99 . exon 33453 33595 . - . ID=Phyra83892.5;Parent=Phyra83892;constitutive=1;ensembl_phase=1;rank=5 scaffold_99 . CDS 33673 33840 . - 0 ID=Phyra83892;Parent=Phyra83892;rank=4 scaffold_99 . exon 33673 33840 . - . ID=Phyra83892.4;Parent=Phyra83892;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_99 . CDS 33914 34154 . - 0 ID=Phyra83892;Parent=Phyra83892;rank=3 scaffold_99 . exon 33914 34154 . - . ID=Phyra83892.3;Parent=Phyra83892;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_99 . CDS 34226 34305 . - 0 ID=Phyra83892;Parent=Phyra83892;rank=2 scaffold_99 . exon 34226 34305 . - . ID=Phyra83892.2;Parent=Phyra83892;constitutive=1;ensembl_phase=1;rank=2 scaffold_99 . CDS 34398 34410 . - 0 ID=Phyra83892;Parent=Phyra83892;rank=1 scaffold_99 . exon 34398 34410 . - . ID=Phyra83892.1;Parent=Phyra83892;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 ensembl protein_coding_gene 35165 36868 . + . ID=Phyra83893;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000015;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 35165 36868 . + . ID=Phyra83893;Parent=Phyra83893;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 35165 35392 . + 0 ID=Phyra83893;Parent=Phyra83893;rank=1 scaffold_99 . exon 35165 35392 . + . ID=Phyra83893.1;Parent=Phyra83893;constitutive=1;rank=1 scaffold_99 . CDS 35465 35532 . + 0 ID=Phyra83893;Parent=Phyra83893;rank=2 scaffold_99 . exon 35465 35532 . + . ID=Phyra83893.2;Parent=Phyra83893;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_99 . CDS 35601 35989 . + 0 ID=Phyra83893;Parent=Phyra83893;rank=3 scaffold_99 . exon 35601 35989 . + . ID=Phyra83893.3;Parent=Phyra83893;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_99 . CDS 36071 36147 . + 0 ID=Phyra83893;Parent=Phyra83893;rank=4 scaffold_99 . exon 36071 36147 . + . ID=Phyra83893.4;Parent=Phyra83893;constitutive=1;ensembl_phase=1;rank=4 scaffold_99 . CDS 36293 36868 . + 0 ID=Phyra83893;Parent=Phyra83893;rank=5 scaffold_99 . exon 36293 36868 . + . ID=Phyra83893.5;Parent=Phyra83893;constitutive=1;rank=5 scaffold_99 ensembl protein_coding_gene 37165 37530 . - . ID=Phyra83894;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000016;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 37165 37530 . - . ID=Phyra83894;Parent=Phyra83894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 37165 37530 . - 0 ID=Phyra83894;Parent=Phyra83894;rank=1 scaffold_99 . exon 37165 37530 . - . ID=Phyra83894.1;Parent=Phyra83894;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 37894 39170 . + . ID=Phyra83895;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000017;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 37894 39170 . + . ID=Phyra83895;Parent=Phyra83895;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 37894 39048 . + 0 ID=Phyra83895;Parent=Phyra83895;rank=1 scaffold_99 . exon 37894 39048 . + . ID=Phyra83895.1;Parent=Phyra83895;constitutive=1;rank=1 scaffold_99 . CDS 39108 39170 . + 0 ID=Phyra83895;Parent=Phyra83895;rank=2 scaffold_99 . exon 39108 39170 . + . ID=Phyra83895.2;Parent=Phyra83895;constitutive=1;rank=2 scaffold_99 ensembl protein_coding_gene 41560 43773 . - . ID=Phyra83896;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000018;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 41560 43773 . - . ID=Phyra83896;Parent=Phyra83896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 41560 43773 . - 0 ID=Phyra83896;Parent=Phyra83896;rank=1 scaffold_99 . exon 41560 43773 . - . ID=Phyra83896.1;Parent=Phyra83896;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 45597 46154 . + . ID=Phyra83897;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000019;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 45597 46154 . + . ID=Phyra83897;Parent=Phyra83897;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 45597 45608 . + 0 ID=Phyra83897;Parent=Phyra83897;rank=1 scaffold_99 . exon 45597 45608 . + . ID=Phyra83897.1;Parent=Phyra83897;constitutive=1;rank=1 scaffold_99 . CDS 45637 45830 . + 0 ID=Phyra83897;Parent=Phyra83897;rank=2 scaffold_99 . exon 45637 45830 . + . ID=Phyra83897.2;Parent=Phyra83897;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_99 . CDS 45899 46154 . + 0 ID=Phyra83897;Parent=Phyra83897;rank=3 scaffold_99 . exon 45899 46154 . + . ID=Phyra83897.3;Parent=Phyra83897;constitutive=1;ensembl_phase=2;rank=3 scaffold_99 ensembl protein_coding_gene 48224 49968 . + . ID=Phyra83898;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000020;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 48224 49968 . + . ID=Phyra83898;Parent=Phyra83898;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 48224 48552 . + 0 ID=Phyra83898;Parent=Phyra83898;rank=1 scaffold_99 . exon 48224 48552 . + . ID=Phyra83898.1;Parent=Phyra83898;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_99 . CDS 48621 48848 . + 0 ID=Phyra83898;Parent=Phyra83898;rank=2 scaffold_99 . exon 48621 48848 . + . ID=Phyra83898.2;Parent=Phyra83898;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_99 . CDS 48901 49074 . + 0 ID=Phyra83898;Parent=Phyra83898;rank=3 scaffold_99 . CDS 49143 49968 . + 0 ID=Phyra83898;Parent=Phyra83898;rank=4 scaffold_99 . biological_region 50770 50775 0.999 - . logic_name=eponine scaffold_99 . biological_region 51220 51226 0.999 - . logic_name=eponine scaffold_99 . biological_region 51232 51237 0.999 + . logic_name=eponine scaffold_99 . repeat_region 52486 52530 . ? . description=trf scaffold_99 . repeat_region 52840 52871 . ? . description=trf scaffold_99 . biological_region 55068 55068 0.999 + . logic_name=eponine scaffold_99 . biological_region 55954 55956 0.999 + . logic_name=eponine scaffold_99 . repeat_region 56025 56089 . ? . description=trf scaffold_99 . exon 48901 49074 . + . ID=Phyra83898.3;Parent=Phyra83898;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_99 . exon 49143 49968 . + . ID=Phyra83898.4;Parent=Phyra83898;constitutive=1;ensembl_phase=2;rank=4 scaffold_99 ensembl protein_coding_gene 50154 51350 . - . ID=Phyra83899;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000021;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 50154 51350 . - . ID=Phyra83899;Parent=Phyra83899;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 50154 51350 . - 0 ID=Phyra83899;Parent=Phyra83899;rank=1 scaffold_99 . exon 50154 51350 . - . ID=Phyra83899.1;Parent=Phyra83899;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 51513 52291 . + . ID=Phyra83900;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000022;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 51513 52291 . + . ID=Phyra83900;Parent=Phyra83900;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 51513 51594 . + 0 ID=Phyra83900;Parent=Phyra83900;rank=1 scaffold_99 . exon 51513 51594 . + . ID=Phyra83900.1;Parent=Phyra83900;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 . CDS 51657 51742 . + 0 ID=Phyra83900;Parent=Phyra83900;rank=2 scaffold_99 . exon 51657 51742 . + . ID=Phyra83900.2;Parent=Phyra83900;constitutive=1;ensembl_phase=1;rank=2 scaffold_99 . CDS 51801 51926 . + 0 ID=Phyra83900;Parent=Phyra83900;rank=3 scaffold_99 . exon 51801 51926 . + . ID=Phyra83900.3;Parent=Phyra83900;constitutive=1;rank=3 scaffold_99 . CDS 51998 52291 . + 0 ID=Phyra83900;Parent=Phyra83900;rank=4 scaffold_99 . exon 51998 52291 . + . ID=Phyra83900.4;Parent=Phyra83900;constitutive=1;rank=4 scaffold_99 ensembl protein_coding_gene 55438 56853 . + . ID=Phyra83901;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000023;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 55438 56853 . + . ID=Phyra83901;Parent=Phyra83901;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 55438 55555 . + 0 ID=Phyra83901;Parent=Phyra83901;rank=1 scaffold_99 . exon 55438 55555 . + . ID=Phyra83901.1;Parent=Phyra83901;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 . CDS 55590 55630 . + 0 ID=Phyra83901;Parent=Phyra83901;rank=2 scaffold_99 . exon 55590 55630 . + . ID=Phyra83901.2;Parent=Phyra83901;constitutive=1;ensembl_phase=1;rank=2 scaffold_99 . CDS 55713 55992 . + 0 ID=Phyra83901;Parent=Phyra83901;rank=3 scaffold_99 . exon 55713 55992 . + . ID=Phyra83901.3;Parent=Phyra83901;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_99 . CDS 56070 56259 . + 0 ID=Phyra83901;Parent=Phyra83901;rank=4 scaffold_99 . exon 56070 56259 . + . ID=Phyra83901.4;Parent=Phyra83901;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_99 . CDS 56301 56511 . + 0 ID=Phyra83901;Parent=Phyra83901;rank=5 scaffold_99 . exon 56301 56511 . + . ID=Phyra83901.5;Parent=Phyra83901;constitutive=1;ensembl_phase=2;rank=5 scaffold_99 . CDS 56545 56853 . + 0 ID=Phyra83901;Parent=Phyra83901;rank=6 scaffold_99 . exon 56545 56853 . + . ID=Phyra83901.6;Parent=Phyra83901;constitutive=1;rank=6 scaffold_99 ensembl protein_coding_gene 66534 66845 . - . ID=Phyra54969;biotype=protein_coding;external_name=gwEuk.99.20.1;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 66534 66845 . - . ID=Phyra54969;Parent=Phyra54969;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 66534 66845 . - 0 ID=Phyra54969;Parent=Phyra54969;rank=1 scaffold_99 . exon 66534 66845 . - . ID=Phyra54969.1;Parent=Phyra54969;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 58510 59789 . + . ID=Phyra83902;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000024;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 58510 59789 . + . ID=Phyra83902;Parent=Phyra83902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 58510 59677 . + 0 ID=Phyra83902;Parent=Phyra83902;rank=1 scaffold_99 . exon 58510 59677 . + . ID=Phyra83902.1;Parent=Phyra83902;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 . CDS 59713 59789 . + 0 ID=Phyra83902;Parent=Phyra83902;rank=2 scaffold_99 . exon 59713 59789 . + . ID=Phyra83902.2;Parent=Phyra83902;constitutive=1;ensembl_phase=1;rank=2 scaffold_99 ensembl protein_coding_gene 60859 61398 . - . ID=Phyra83903;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000025;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 60859 61398 . - . ID=Phyra83903;Parent=Phyra83903;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 60859 61398 . - 0 ID=Phyra83903;Parent=Phyra83903;rank=1 scaffold_99 . exon 60859 61398 . - . ID=Phyra83903.1;Parent=Phyra83903;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 63147 64461 . - . ID=Phyra83904;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000026;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 63147 64461 . - . ID=Phyra83904;Parent=Phyra83904;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 63147 63614 . - 0 ID=Phyra83904;Parent=Phyra83904;rank=3 scaffold_99 . exon 63147 63614 . - . ID=Phyra83904.3;Parent=Phyra83904;constitutive=1;rank=3 scaffold_99 . CDS 63688 64164 . - 0 ID=Phyra83904;Parent=Phyra83904;rank=2 scaffold_99 . exon 63688 64164 . - . ID=Phyra83904.2;Parent=Phyra83904;constitutive=1;rank=2 scaffold_99 . CDS 64234 64461 . - 0 ID=Phyra83904;Parent=Phyra83904;rank=1 scaffold_99 . exon 64234 64461 . - . ID=Phyra83904.1;Parent=Phyra83904;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 65435 66223 . + . ID=Phyra83905;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000027;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 65435 66223 . + . ID=Phyra83905;Parent=Phyra83905;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 65435 66223 . + 0 ID=Phyra83905;Parent=Phyra83905;rank=1 scaffold_99 . exon 65435 66223 . + . ID=Phyra83905.1;Parent=Phyra83905;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 67393 69884 . + . ID=Phyra83907;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000029;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 67393 69884 . + . ID=Phyra83907;Parent=Phyra83907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 67393 67658 . + 0 ID=Phyra83907;Parent=Phyra83907;rank=1 scaffold_99 . exon 67393 67658 . + . ID=Phyra83907.1;Parent=Phyra83907;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_99 . CDS 67716 67938 . + 0 ID=Phyra83907;Parent=Phyra83907;rank=2 scaffold_99 . exon 67716 67938 . + . ID=Phyra83907.2;Parent=Phyra83907;constitutive=1;ensembl_phase=2;rank=2 scaffold_99 . CDS 68019 69884 . + 0 ID=Phyra83907;Parent=Phyra83907;rank=3 scaffold_99 . exon 68019 69884 . + . ID=Phyra83907.3;Parent=Phyra83907;constitutive=1;rank=3 scaffold_99 . repeat_region 71205 71235 . ? . description=trf scaffold_99 . repeat_region 77250 77261 . ? . description=dust scaffold_99 . biological_region 77839 77845 0.999 - . logic_name=eponine scaffold_99 . biological_region 77894 77896 0.999 + . logic_name=eponine scaffold_99 ensembl protein_coding_gene 69992 70915 . - . ID=Phyra83908;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000030;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 69992 70915 . - . ID=Phyra83908;Parent=Phyra83908;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 69992 70915 . - 0 ID=Phyra83908;Parent=Phyra83908;rank=1 scaffold_99 . exon 69992 70915 . - . ID=Phyra83908.1;Parent=Phyra83908;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 72739 75096 . + . ID=Phyra83909;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000031;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 72739 75096 . + . ID=Phyra83909;Parent=Phyra83909;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 72739 74765 . + 0 ID=Phyra83909;Parent=Phyra83909;rank=1 scaffold_99 . exon 72739 74765 . + . ID=Phyra83909.1;Parent=Phyra83909;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_99 . CDS 74838 75096 . + 0 ID=Phyra83909;Parent=Phyra83909;rank=2 scaffold_99 . exon 74838 75096 . + . ID=Phyra83909.2;Parent=Phyra83909;constitutive=1;ensembl_phase=2;rank=2 scaffold_99 ensembl protein_coding_gene 77758 78738 . + . ID=Phyra83911;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000033;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 77758 78738 . + . ID=Phyra83911;Parent=Phyra83911;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 77758 78738 . + 0 ID=Phyra83911;Parent=Phyra83911;rank=1 scaffold_99 . exon 77758 78738 . + . ID=Phyra83911.1;Parent=Phyra83911;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 75247 76626 . - . ID=Phyra96717;biotype=protein_coding;external_name=C_scaffold_99000011;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 75247 76626 . - . ID=Phyra96717;Parent=Phyra96717;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 75247 75427 . - 0 ID=Phyra96717;Parent=Phyra96717;rank=7 scaffold_99 . exon 75247 75427 . - . ID=Phyra96717.7;Parent=Phyra96717;constitutive=1;ensembl_phase=2;rank=7 scaffold_99 . CDS 75485 75717 . - 0 ID=Phyra96717;Parent=Phyra96717;rank=6 scaffold_99 . exon 75485 75717 . - . ID=Phyra96717.6;Parent=Phyra96717;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_99 . CDS 75797 75842 . - 0 ID=Phyra96717;Parent=Phyra96717;rank=5 scaffold_99 . exon 75797 75842 . - . ID=Phyra96717.5;Parent=Phyra96717;constitutive=1;ensembl_phase=2;rank=5 scaffold_99 . CDS 75917 75932 . - 0 ID=Phyra96717;Parent=Phyra96717;rank=4 scaffold_99 . exon 75917 75932 . - . ID=Phyra96717.4;Parent=Phyra96717;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_99 . CDS 76002 76179 . - 0 ID=Phyra96717;Parent=Phyra96717;rank=3 scaffold_99 . exon 76002 76179 . - . ID=Phyra96717.3;Parent=Phyra96717;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_99 . CDS 76248 76319 . - 0 ID=Phyra96717;Parent=Phyra96717;rank=2 scaffold_99 . exon 76248 76319 . - . ID=Phyra96717.2;Parent=Phyra96717;constitutive=1;rank=2 scaffold_99 . CDS 76411 76626 . - 0 ID=Phyra96717;Parent=Phyra96717;rank=1 scaffold_99 . exon 76411 76626 . - . ID=Phyra96717.1;Parent=Phyra96717;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 79040 80874 . - . ID=Phyra83912;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000034;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 79040 80874 . - . ID=Phyra83912;Parent=Phyra83912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 79040 79525 . - 0 ID=Phyra83912;Parent=Phyra83912;rank=3 scaffold_99 . exon 79040 79525 . - . ID=Phyra83912.3;Parent=Phyra83912;constitutive=1;rank=3 scaffold_99 . CDS 79597 79823 . - 0 ID=Phyra83912;Parent=Phyra83912;rank=2 scaffold_99 . exon 79597 79823 . - . ID=Phyra83912.2;Parent=Phyra83912;constitutive=1;ensembl_phase=1;rank=2 scaffold_99 . CDS 80190 80874 . - 0 ID=Phyra83912;Parent=Phyra83912;rank=1 scaffold_99 . exon 80190 80874 . - . ID=Phyra83912.1;Parent=Phyra83912;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 ensembl protein_coding_gene 81382 85336 . + . ID=Phyra83913;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000035;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 81382 85336 . + . ID=Phyra83913;Parent=Phyra83913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 81382 84962 . + 0 ID=Phyra83913;Parent=Phyra83913;rank=1 scaffold_99 . exon 81382 84962 . + . ID=Phyra83913.1;Parent=Phyra83913;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_99 . CDS 85036 85336 . + 0 ID=Phyra83913;Parent=Phyra83913;rank=2 scaffold_99 . exon 85036 85336 . + . ID=Phyra83913.2;Parent=Phyra83913;constitutive=1;ensembl_phase=2;rank=2 scaffold_99 ensembl protein_coding_gene 85600 87705 . + . ID=Phyra83914;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000036;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 85600 87705 . + . ID=Phyra83914;Parent=Phyra83914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 85600 85874 . + 0 ID=Phyra83914;Parent=Phyra83914;rank=1 scaffold_99 . exon 85600 85874 . + . ID=Phyra83914.1;Parent=Phyra83914;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_99 . CDS 86019 87705 . + 0 ID=Phyra83914;Parent=Phyra83914;rank=2 scaffold_99 . exon 86019 87705 . + . ID=Phyra83914.2;Parent=Phyra83914;constitutive=1;ensembl_phase=2;rank=2 scaffold_99 . biological_region 90104 90106 0.999 + . logic_name=eponine scaffold_99 . biological_region 91163 91168 0.999 + . logic_name=eponine scaffold_99 . biological_region 91633 91634 0.999 - . logic_name=eponine scaffold_99 . biological_region 91665 91670 0.999 - . logic_name=eponine scaffold_99 . biological_region 91690 91694 0.999 - . logic_name=eponine scaffold_99 . biological_region 91710 91715 0.999 - . logic_name=eponine scaffold_99 . biological_region 91741 91744 0.999 - . logic_name=eponine scaffold_99 . repeat_region 92471 94183 . ? . description=dust scaffold_99 . biological_region 95585 95588 0.999 + . logic_name=eponine scaffold_99 . biological_region 95614 95619 0.999 + . logic_name=eponine scaffold_99 . biological_region 95635 95639 0.999 + . logic_name=eponine scaffold_99 . biological_region 95659 95664 0.999 + . logic_name=eponine scaffold_99 . biological_region 95695 95696 0.999 + . logic_name=eponine scaffold_99 . biological_region 96161 96166 0.999 - . logic_name=eponine scaffold_99 . biological_region 97244 97244 0.999 - . logic_name=eponine scaffold_99 ensembl protein_coding_gene 88403 89236 . - . ID=Phyra83915;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000037;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 88403 89236 . - . ID=Phyra83915;Parent=Phyra83915;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 88403 89236 . - 0 ID=Phyra83915;Parent=Phyra83915;rank=1 scaffold_99 . exon 88403 89236 . - . ID=Phyra83915.1;Parent=Phyra83915;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 89617 90248 . + . ID=Phyra83916;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000038;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 89617 90248 . + . ID=Phyra83916;Parent=Phyra83916;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 89617 89968 . + 0 ID=Phyra83916;Parent=Phyra83916;rank=1 scaffold_99 . exon 89617 89968 . + . ID=Phyra83916.1;Parent=Phyra83916;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 . CDS 90028 90248 . + 0 ID=Phyra83916;Parent=Phyra83916;rank=2 scaffold_99 . exon 90028 90248 . + . ID=Phyra83916.2;Parent=Phyra83916;constitutive=1;ensembl_phase=1;rank=2 scaffold_99 ensembl protein_coding_gene 91486 92402 . + . ID=Phyra83917;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000039;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 91486 92402 . + . ID=Phyra83917;Parent=Phyra83917;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 91486 92304 . + 0 ID=Phyra83917;Parent=Phyra83917;rank=1 scaffold_99 . exon 91486 92304 . + . ID=Phyra83917.1;Parent=Phyra83917;constitutive=1;rank=1 scaffold_99 . CDS 92328 92402 . + 0 ID=Phyra83917;Parent=Phyra83917;rank=2 scaffold_99 . exon 92328 92402 . + . ID=Phyra83917.2;Parent=Phyra83917;constitutive=1;rank=2 scaffold_99 ensembl protein_coding_gene 94402 95842 . - . ID=Phyra83918;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000040;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 94402 95842 . - . ID=Phyra83918;Parent=Phyra83918;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 94402 94432 . - 0 ID=Phyra83918;Parent=Phyra83918;rank=3 scaffold_99 . exon 94402 94432 . - . ID=Phyra83918.3;Parent=Phyra83918;constitutive=1;ensembl_phase=2;rank=3 scaffold_99 . CDS 94473 94840 . - 0 ID=Phyra83918;Parent=Phyra83918;rank=2 scaffold_99 . exon 94473 94840 . - . ID=Phyra83918.2;Parent=Phyra83918;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_99 . CDS 94916 95842 . - 0 ID=Phyra83918;Parent=Phyra83918;rank=1 scaffold_99 . exon 94916 95842 . - . ID=Phyra83918.1;Parent=Phyra83918;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 97080 97712 . - . ID=Phyra83919;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000041;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 97080 97712 . - . ID=Phyra83919;Parent=Phyra83919;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 97080 97712 . - 0 ID=Phyra83919;Parent=Phyra83919;rank=1 scaffold_99 . exon 97080 97712 . - . ID=Phyra83919.1;Parent=Phyra83919;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 99861 100916 . - . ID=Phyra54987;biotype=protein_coding;external_name=gwEuk.99.38.1;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 99861 100916 . - . ID=Phyra54987;Parent=Phyra54987;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 99861 100916 . - 0 ID=Phyra54987;Parent=Phyra54987;rank=1 scaffold_99 . exon 99861 100916 . - . ID=Phyra54987.1;Parent=Phyra54987;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 98083 98916 . + . ID=Phyra83920;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000042;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 98083 98916 . + . ID=Phyra83920;Parent=Phyra83920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 98083 98916 . + 0 ID=Phyra83920;Parent=Phyra83920;rank=1 scaffold_99 . exon 98083 98916 . + . ID=Phyra83920.1;Parent=Phyra83920;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 103967 105430 . - . ID=Phyra83922;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000044;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 103967 105430 . - . ID=Phyra83922;Parent=Phyra83922;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 103967 105430 . - 0 ID=Phyra83922;Parent=Phyra83922;rank=1 scaffold_99 . exon 103967 105430 . - . ID=Phyra83922.1;Parent=Phyra83922;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 106062 106382 . - . ID=Phyra83923;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000045;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 106062 106382 . - . ID=Phyra83923;Parent=Phyra83923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 106062 106382 . - 0 ID=Phyra83923;Parent=Phyra83923;rank=1 scaffold_99 . exon 106062 106382 . - . ID=Phyra83923.1;Parent=Phyra83923;constitutive=1;rank=1 scaffold_99 . biological_region 109518 109521 0.999 + . logic_name=eponine scaffold_99 . repeat_region 110731 110739 . ? . description=dust scaffold_99 . repeat_region 112971 112979 . ? . description=dust scaffold_99 . biological_region 113154 113156 0.999 + . logic_name=eponine scaffold_99 . biological_region 114885 114890 0.999 - . logic_name=eponine scaffold_99 . biological_region 114895 114896 0.999 - . logic_name=eponine scaffold_99 . repeat_region 116665 116674 . ? . description=dust scaffold_99 ensembl protein_coding_gene 113471 114412 . + . ID=Phyra72169;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_99000003;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 113471 114412 . + . ID=Phyra72169;Parent=Phyra72169;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 113471 113974 . + 0 ID=Phyra72169;Parent=Phyra72169;rank=1 scaffold_99 . exon 113471 113974 . + . ID=Phyra72169.1;Parent=Phyra72169;constitutive=1;rank=1 scaffold_99 . CDS 114050 114412 . + 0 ID=Phyra72169;Parent=Phyra72169;rank=2 scaffold_99 . exon 114050 114412 . + . ID=Phyra72169.2;Parent=Phyra72169;constitutive=1;rank=2 scaffold_99 ensembl protein_coding_gene 107973 108293 . + . ID=Phyra83924;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000046;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 107973 108293 . + . ID=Phyra83924;Parent=Phyra83924;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 107973 108293 . + 0 ID=Phyra83924;Parent=Phyra83924;rank=1 scaffold_99 . exon 107973 108293 . + . ID=Phyra83924.1;Parent=Phyra83924;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 108482 110254 . - . ID=Phyra83925;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000047;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 108482 110254 . - . ID=Phyra83925;Parent=Phyra83925;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 108482 110254 . - 0 ID=Phyra83925;Parent=Phyra83925;rank=1 scaffold_99 . exon 108482 110254 . - . ID=Phyra83925.1;Parent=Phyra83925;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 111025 111351 . + . ID=Phyra83926;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000048;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 111025 111351 . + . ID=Phyra83926;Parent=Phyra83926;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 111025 111351 . + 0 ID=Phyra83926;Parent=Phyra83926;rank=1 scaffold_99 . exon 111025 111351 . + . ID=Phyra83926.1;Parent=Phyra83926;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 111842 113222 . - . ID=Phyra83927;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000049;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 111842 113222 . - . ID=Phyra83927;Parent=Phyra83927;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 111842 112462 . - 0 ID=Phyra83927;Parent=Phyra83927;rank=5 scaffold_99 . exon 111842 112462 . - . ID=Phyra83927.5;Parent=Phyra83927;constitutive=1;rank=5 scaffold_99 . CDS 112534 112600 . - 0 ID=Phyra83927;Parent=Phyra83927;rank=4 scaffold_99 . exon 112534 112600 . - . ID=Phyra83927.4;Parent=Phyra83927;constitutive=1;ensembl_phase=2;rank=4 scaffold_99 . CDS 112669 112736 . - 0 ID=Phyra83927;Parent=Phyra83927;rank=3 scaffold_99 . exon 112669 112736 . - . ID=Phyra83927.3;Parent=Phyra83927;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_99 . CDS 112805 112929 . - 0 ID=Phyra83927;Parent=Phyra83927;rank=2 scaffold_99 . exon 112805 112929 . - . ID=Phyra83927.2;Parent=Phyra83927;constitutive=1;ensembl_phase=1;rank=2 scaffold_99 . CDS 113003 113222 . - 0 ID=Phyra83927;Parent=Phyra83927;rank=1 scaffold_99 . exon 113003 113222 . - . ID=Phyra83927.1;Parent=Phyra83927;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 ensembl protein_coding_gene 114763 115689 . - . ID=Phyra83929;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000051;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 114763 115689 . - . ID=Phyra83929;Parent=Phyra83929;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 114763 115689 . - 0 ID=Phyra83929;Parent=Phyra83929;rank=1 scaffold_99 . exon 114763 115689 . - . ID=Phyra83929.1;Parent=Phyra83929;constitutive=1;rank=1 scaffold_99 . repeat_region 126155 126201 . ? . description=trf scaffold_99 ensembl protein_coding_gene 120254 122311 . + . ID=Phyra83930;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000052;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 120254 122311 . + . ID=Phyra83930;Parent=Phyra83930;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 120254 120367 . + 0 ID=Phyra83930;Parent=Phyra83930;rank=1 scaffold_99 . exon 120254 120367 . + . ID=Phyra83930.1;Parent=Phyra83930;constitutive=1;rank=1 scaffold_99 . CDS 120394 120693 . + 0 ID=Phyra83930;Parent=Phyra83930;rank=2 scaffold_99 . exon 120394 120693 . + . ID=Phyra83930.2;Parent=Phyra83930;constitutive=1;rank=2 scaffold_99 . CDS 120769 120967 . + 0 ID=Phyra83930;Parent=Phyra83930;rank=3 scaffold_99 . exon 120769 120967 . + . ID=Phyra83930.3;Parent=Phyra83930;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_99 . CDS 121041 122311 . + 0 ID=Phyra83930;Parent=Phyra83930;rank=4 scaffold_99 . exon 121041 122311 . + . ID=Phyra83930.4;Parent=Phyra83930;constitutive=1;ensembl_phase=1;rank=4 scaffold_99 ensembl protein_coding_gene 124986 126374 . + . ID=Phyra83932;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000054;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 124986 126374 . + . ID=Phyra83932;Parent=Phyra83932;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 124986 126374 . + 0 ID=Phyra83932;Parent=Phyra83932;rank=1 scaffold_99 . exon 124986 126374 . + . ID=Phyra83932.1;Parent=Phyra83932;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 123185 123949 . - . ID=Phyra96722;biotype=protein_coding;external_name=C_scaffold_99000016;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 123185 123949 . - . ID=Phyra96722;Parent=Phyra96722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 123185 123949 . - 0 ID=Phyra96722;Parent=Phyra96722;rank=1 scaffold_99 . exon 123185 123949 . - . ID=Phyra96722.1;Parent=Phyra96722;constitutive=1;rank=1 scaffold_99 . repeat_region 130244 130370 . + . description=Polinton-1_PI scaffold_99 . repeat_region 130617 130624 . ? . description=dust scaffold_99 . biological_region 131749 131750 0.999 + . logic_name=eponine scaffold_99 ensembl protein_coding_gene 129082 130041 . - . ID=Phyra83933;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000055;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 129082 130041 . - . ID=Phyra83933;Parent=Phyra83933;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 129082 129116 . - 0 ID=Phyra83933;Parent=Phyra83933;rank=3 scaffold_99 . exon 129082 129116 . - . ID=Phyra83933.3;Parent=Phyra83933;constitutive=1;ensembl_phase=1;rank=3 scaffold_99 . CDS 129146 129971 . - 0 ID=Phyra83933;Parent=Phyra83933;rank=2 scaffold_99 . exon 129146 129971 . - . ID=Phyra83933.2;Parent=Phyra83933;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_99 . CDS 130036 130041 . - 0 ID=Phyra83933;Parent=Phyra83933;rank=1 scaffold_99 . exon 130036 130041 . - . ID=Phyra83933.1;Parent=Phyra83933;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 133099 134170 . - . ID=Phyra96725;biotype=protein_coding;external_name=C_scaffold_99000019;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 133099 134170 . - . ID=Phyra96725;Parent=Phyra96725;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 133099 133661 . - 0 ID=Phyra96725;Parent=Phyra96725;rank=3 scaffold_99 . exon 133099 133661 . - . ID=Phyra96725.3;Parent=Phyra96725;constitutive=1;ensembl_phase=1;rank=3 scaffold_99 . CDS 133746 133771 . - 0 ID=Phyra96725;Parent=Phyra96725;rank=2 scaffold_99 . exon 133746 133771 . - . ID=Phyra96725.2;Parent=Phyra96725;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_99 . CDS 133950 134170 . - 0 ID=Phyra96725;Parent=Phyra96725;rank=1 scaffold_99 . exon 133950 134170 . - . ID=Phyra96725.1;Parent=Phyra96725;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_99 ensembl protein_coding_gene 134412 137714 . + . ID=Phyra96726;biotype=protein_coding;external_name=C_scaffold_99000020;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 134412 137714 . + . ID=Phyra96726;Parent=Phyra96726;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 134412 134619 . + 0 ID=Phyra96726;Parent=Phyra96726;rank=1 scaffold_99 . exon 134412 134619 . + . ID=Phyra96726.1;Parent=Phyra96726;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 . CDS 134957 135044 . + 0 ID=Phyra96726;Parent=Phyra96726;rank=2 scaffold_99 . exon 134957 135044 . + . ID=Phyra96726.2;Parent=Phyra96726;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_99 . CDS 135119 135686 . + 0 ID=Phyra96726;Parent=Phyra96726;rank=3 scaffold_99 . exon 135119 135686 . + . ID=Phyra96726.3;Parent=Phyra96726;constitutive=1;ensembl_phase=2;rank=3 scaffold_99 . CDS 136473 136506 . + 0 ID=Phyra96726;Parent=Phyra96726;rank=4 scaffold_99 . exon 136473 136506 . + . ID=Phyra96726.4;Parent=Phyra96726;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_99 . CDS 136597 136764 . + 0 ID=Phyra96726;Parent=Phyra96726;rank=5 scaffold_99 . CDS 136822 137010 . + 0 ID=Phyra96726;Parent=Phyra96726;rank=6 scaffold_99 . CDS 137110 137282 . + 0 ID=Phyra96726;Parent=Phyra96726;rank=7 scaffold_99 . CDS 137427 137489 . + 0 ID=Phyra96726;Parent=Phyra96726;rank=8 scaffold_99 . CDS 137523 137714 . + 0 ID=Phyra96726;Parent=Phyra96726;rank=9 scaffold_99 . repeat_region 138096 138147 . ? . description=trf scaffold_99 . repeat_region 143609 143636 . ? . description=trf scaffold_99 ensembl protein_coding_gene 139070 139969 . + . ID=Phyra83936;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000058;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 139070 139969 . + . ID=Phyra83936;Parent=Phyra83936;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 139070 139480 . + 0 ID=Phyra83936;Parent=Phyra83936;rank=1 scaffold_99 . exon 139070 139480 . + . ID=Phyra83936.1;Parent=Phyra83936;constitutive=1;rank=1 scaffold_99 . CDS 139504 139861 . + 0 ID=Phyra83936;Parent=Phyra83936;rank=2 scaffold_99 . exon 139504 139861 . + . ID=Phyra83936.2;Parent=Phyra83936;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_99 . CDS 139899 139969 . + 0 ID=Phyra83936;Parent=Phyra83936;rank=3 scaffold_99 . exon 139899 139969 . + . ID=Phyra83936.3;Parent=Phyra83936;constitutive=1;ensembl_phase=1;rank=3 scaffold_99 ensembl protein_coding_gene 144345 146000 . + . ID=Phyra83937;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000059;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 144345 146000 . + . ID=Phyra83937;Parent=Phyra83937;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 144345 146000 . + 0 ID=Phyra83937;Parent=Phyra83937;rank=1 scaffold_99 . exon 144345 146000 . + . ID=Phyra83937.1;Parent=Phyra83937;constitutive=1;rank=1 scaffold_99 . exon 136597 136764 . + . ID=Phyra96726.5;Parent=Phyra96726;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_99 . exon 136822 137010 . + . ID=Phyra96726.6;Parent=Phyra96726;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_99 . exon 137110 137282 . + . ID=Phyra96726.7;Parent=Phyra96726;constitutive=1;ensembl_phase=1;rank=7 scaffold_99 . exon 137427 137489 . + . ID=Phyra96726.8;Parent=Phyra96726;constitutive=1;rank=8 scaffold_99 . exon 137523 137714 . + . ID=Phyra96726.9;Parent=Phyra96726;constitutive=1;rank=9 scaffold_99 . biological_region 151978 151978 0.999 + . logic_name=eponine scaffold_99 . repeat_region 153396 153441 . ? . description=dust scaffold_99 . repeat_region 154638 154660 . ? . description=dust scaffold_99 ensembl tRNA_gene 154291 154363 . - . ID=EPrPRAG00000000203;biotype=tRNA;description=tRNA-Val for anticodon UAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_99 ensembl transcript 154291 154363 . - . ID=EPrPRAT00000000203;Parent=EPrPRAG00000000203;biotype=tRNA;logic_name=ncrna_eg scaffold_99 . exon 154291 154363 . - . ID=EPrPRAE00000000203;Parent=EPrPRAT00000000203;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 ensembl protein_coding_gene 151824 152936 . - . ID=Phyra83938;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_99000060;logic_name=jgi_phyra1 scaffold_99 ensembl transcript 151824 152936 . - . ID=Phyra83938;Parent=Phyra83938;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_99 . CDS 151824 152936 . - 0 ID=Phyra83938;Parent=Phyra83938;rank=1 scaffold_99 . exon 151824 152936 . - . ID=Phyra83938.1;Parent=Phyra83938;constitutive=1;rank=1 scaffold_99 . repeat_region 156397 156417 . ? . description=trf scaffold_99 . repeat_region 159090 159195 . + . description=(TGAG)n scaffold_99 . repeat_region 159115 159199 . ? . description=trf scaffold_99 . repeat_region 159134 159189 . ? . description=trf scaffold_99 ensembl tRNA_gene 165462 165533 . + . ID=EPrPRAG00000000083;biotype=tRNA;description=tRNA-Pro for anticodon CGG [Source:TRNASCAN_SE%3BAcc:tRNA-Pro];external_name=tRNA-Pro;logic_name=ncrna_eg scaffold_99 ensembl transcript 165462 165533 . + . ID=EPrPRAT00000000083;Parent=EPrPRAG00000000083;biotype=tRNA;logic_name=ncrna_eg scaffold_99 . exon 165462 165533 . + . ID=EPrPRAE00000000083;Parent=EPrPRAT00000000083;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_96 1 174541 scaffold_96 . repeat_region 1205 1215 . ? . description=dust scaffold_96 . repeat_region 2010 3076 . ? . description=dust scaffold_96 . biological_region 3181 3187 0.999 + . logic_name=eponine scaffold_96 . biological_region 3204 3206 0.999 + . logic_name=eponine scaffold_96 . biological_region 3274 3277 0.999 - . logic_name=eponine scaffold_96 . repeat_region 5556 5605 . ? . description=dust scaffold_96 . repeat_region 5738 5746 . ? . description=dust scaffold_96 . repeat_region 6666 6715 . ? . description=dust scaffold_96 . repeat_region 9093 9118 . ? . description=trf scaffold_96 . repeat_region 9241 9290 . ? . description=dust scaffold_96 ensembl protein_coding_gene 723 1667 . + . ID=Phyra83763;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000001;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 723 1667 . + . ID=Phyra83763;Parent=Phyra83763;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 723 1173 . + 0 ID=Phyra83763;Parent=Phyra83763;rank=1 scaffold_96 . exon 723 1173 . + . ID=Phyra83763.1;Parent=Phyra83763;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 . CDS 1285 1667 . + 0 ID=Phyra83763;Parent=Phyra83763;rank=2 scaffold_96 . exon 1285 1667 . + . ID=Phyra83763.2;Parent=Phyra83763;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 ensembl protein_coding_gene 14341 15588 . - . ID=Phyra83764;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000002;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 14341 15588 . - . ID=Phyra83764;Parent=Phyra83764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 14341 15588 . - 0 ID=Phyra83764;Parent=Phyra83764;rank=1 scaffold_96 . exon 14341 15588 . - . ID=Phyra83764.1;Parent=Phyra83764;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 16430 17556 . + . ID=Phyra83765;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000003;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 16430 17556 . + . ID=Phyra83765;Parent=Phyra83765;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 16430 16494 . + 0 ID=Phyra83765;Parent=Phyra83765;rank=1 scaffold_96 . exon 16430 16494 . + . ID=Phyra83765.1;Parent=Phyra83765;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_96 . CDS 16708 17040 . + 0 ID=Phyra83765;Parent=Phyra83765;rank=2 scaffold_96 . exon 16708 17040 . + . ID=Phyra83765.2;Parent=Phyra83765;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_96 . CDS 17082 17556 . + 0 ID=Phyra83765;Parent=Phyra83765;rank=3 scaffold_96 . exon 17082 17556 . + . ID=Phyra83765.3;Parent=Phyra83765;constitutive=1;ensembl_phase=2;rank=3 scaffold_96 ensembl protein_coding_gene 21274 22782 . - . ID=Phyra72158;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_96000001;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 21274 22782 . - . ID=Phyra72158;Parent=Phyra72158;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 21274 22782 . - 0 ID=Phyra72158;Parent=Phyra72158;rank=1 scaffold_96 . exon 21274 22782 . - . ID=Phyra72158.1;Parent=Phyra72158;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 26979 27455 . + . ID=Phyra83767;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000005;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 26979 27455 . + . ID=Phyra83767;Parent=Phyra83767;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 26979 27455 . + 0 ID=Phyra83767;Parent=Phyra83767;rank=1 scaffold_96 . exon 26979 27455 . + . ID=Phyra83767.1;Parent=Phyra83767;constitutive=1;rank=1 scaffold_96 . repeat_region 30018 31383 . ? . description=dust scaffold_96 . biological_region 31731 31733 0.999 + . logic_name=eponine scaffold_96 . repeat_region 38018 40745 . ? . description=dust scaffold_96 ensembl protein_coding_gene 29320 33042 . - . ID=Phyra83768;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000006;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 29320 33042 . - . ID=Phyra83768;Parent=Phyra83768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 29320 29974 . - 0 ID=Phyra83768;Parent=Phyra83768;rank=2 scaffold_96 . exon 29320 29974 . - . ID=Phyra83768.2;Parent=Phyra83768;constitutive=1;ensembl_phase=2;rank=2 scaffold_96 . CDS 31490 33042 . - 0 ID=Phyra83768;Parent=Phyra83768;rank=1 scaffold_96 . exon 31490 33042 . - . ID=Phyra83768.1;Parent=Phyra83768;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_96 ensembl protein_coding_gene 35075 36372 . - . ID=Phyra83769;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000007;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 35075 36372 . - . ID=Phyra83769;Parent=Phyra83769;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 35075 35887 . - 0 ID=Phyra83769;Parent=Phyra83769;rank=2 scaffold_96 . exon 35075 35887 . - . ID=Phyra83769.2;Parent=Phyra83769;constitutive=1;rank=2 scaffold_96 . CDS 35992 36372 . - 0 ID=Phyra83769;Parent=Phyra83769;rank=1 scaffold_96 . exon 35992 36372 . - . ID=Phyra83769.1;Parent=Phyra83769;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 36758 37290 . + . ID=Phyra83770;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000008;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 36758 37290 . + . ID=Phyra83770;Parent=Phyra83770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 36758 37115 . + 0 ID=Phyra83770;Parent=Phyra83770;rank=1 scaffold_96 . exon 36758 37115 . + . ID=Phyra83770.1;Parent=Phyra83770;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 . CDS 37244 37290 . + 0 ID=Phyra83770;Parent=Phyra83770;rank=2 scaffold_96 . exon 37244 37290 . + . ID=Phyra83770.2;Parent=Phyra83770;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 ensembl protein_coding_gene 37535 37876 . - . ID=Phyra83771;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000009;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 37535 37876 . - . ID=Phyra83771;Parent=Phyra83771;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 37535 37876 . - 0 ID=Phyra83771;Parent=Phyra83771;rank=1 scaffold_96 . exon 37535 37876 . - . ID=Phyra83771.1;Parent=Phyra83771;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 41199 41731 . + . ID=Phyra83772;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000010;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 41199 41731 . + . ID=Phyra83772;Parent=Phyra83772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 41199 41556 . + 0 ID=Phyra83772;Parent=Phyra83772;rank=1 scaffold_96 . exon 41199 41556 . + . ID=Phyra83772.1;Parent=Phyra83772;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 . CDS 41685 41731 . + 0 ID=Phyra83772;Parent=Phyra83772;rank=2 scaffold_96 . exon 41685 41731 . + . ID=Phyra83772.2;Parent=Phyra83772;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 ensembl protein_coding_gene 41976 42930 . - . ID=Phyra83773;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000011;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 41976 42930 . - . ID=Phyra83773;Parent=Phyra83773;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 41976 42399 . - 0 ID=Phyra83773;Parent=Phyra83773;rank=2 scaffold_96 . exon 41976 42399 . - . ID=Phyra83773.2;Parent=Phyra83773;constitutive=1;ensembl_phase=2;rank=2 scaffold_96 . CDS 42458 42930 . - 0 ID=Phyra83773;Parent=Phyra83773;rank=1 scaffold_96 . exon 42458 42930 . - . ID=Phyra83773.1;Parent=Phyra83773;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_96 ensembl protein_coding_gene 43125 43779 . - . ID=Phyra83774;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000012;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 43125 43779 . - . ID=Phyra83774;Parent=Phyra83774;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 43125 43560 . - 0 ID=Phyra83774;Parent=Phyra83774;rank=2 scaffold_96 . exon 43125 43560 . - . ID=Phyra83774.2;Parent=Phyra83774;constitutive=1;ensembl_phase=2;rank=2 scaffold_96 . CDS 43631 43779 . - 0 ID=Phyra83774;Parent=Phyra83774;rank=1 scaffold_96 . exon 43631 43779 . - . ID=Phyra83774.1;Parent=Phyra83774;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_96 . biological_region 50187 50189 0.999 + . logic_name=eponine scaffold_96 . repeat_region 50972 51056 . ? . description=trf scaffold_96 . repeat_region 53153 53300 . ? . description=dust scaffold_96 . repeat_region 54962 61241 . ? . description=dust scaffold_96 . repeat_region 63447 63693 . - . description=GypsyPi-1c_I-int scaffold_96 . repeat_region 65625 65723 . + . description=GypsyPi-1c_I-int scaffold_96 . repeat_region 67774 68134 . + . description=GypsyPi-1c_I-int scaffold_96 . repeat_region 68124 68161 . ? . description=trf scaffold_96 . repeat_region 69016 69035 . ? . description=trf scaffold_96 . repeat_region 69016 69035 . ? . description=dust scaffold_96 . repeat_region 69067 69587 . ? . description=dust scaffold_96 . biological_region 69797 69799 0.999 + . logic_name=eponine scaffold_96 . repeat_region 70147 70196 . ? . description=trf scaffold_96 . biological_region 73075 73077 0.999 - . logic_name=eponine scaffold_96 . biological_region 73177 73180 0.999 - . logic_name=eponine scaffold_96 . biological_region 73229 73231 0.999 - . logic_name=eponine scaffold_96 . biological_region 74743 74746 0.999 - . logic_name=eponine scaffold_96 ensembl protein_coding_gene 72150 72968 . - . ID=Phyra83775;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000013;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 72150 72968 . - . ID=Phyra83775;Parent=Phyra83775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 72150 72968 . - 0 ID=Phyra83775;Parent=Phyra83775;rank=1 scaffold_96 . exon 72150 72968 . - . ID=Phyra83775.1;Parent=Phyra83775;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 78781 80120 . - . ID=Phyra83776;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000014;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 78781 80120 . - . ID=Phyra83776;Parent=Phyra83776;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 78781 79635 . - 0 ID=Phyra83776;Parent=Phyra83776;rank=2 scaffold_96 . exon 78781 79635 . - . ID=Phyra83776.2;Parent=Phyra83776;constitutive=1;rank=2 scaffold_96 . CDS 79740 80120 . - 0 ID=Phyra83776;Parent=Phyra83776;rank=1 scaffold_96 . exon 79740 80120 . - . ID=Phyra83776.1;Parent=Phyra83776;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 81440 82163 . - . ID=Phyra83777;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000015;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 81440 82163 . - . ID=Phyra83777;Parent=Phyra83777;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 81440 81863 . - 0 ID=Phyra83777;Parent=Phyra83777;rank=2 scaffold_96 . exon 81440 81863 . - . ID=Phyra83777.2;Parent=Phyra83777;constitutive=1;ensembl_phase=2;rank=2 scaffold_96 . CDS 81922 82163 . - 0 ID=Phyra83777;Parent=Phyra83777;rank=1 scaffold_96 . exon 81922 82163 . - . ID=Phyra83777.1;Parent=Phyra83777;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_96 . biological_region 87327 87327 0.999 + . logic_name=eponine scaffold_96 . repeat_region 89312 90913 . ? . description=dust scaffold_96 . repeat_region 93546 93566 . ? . description=trf scaffold_96 . biological_region 93719 93724 0.999 + . logic_name=eponine scaffold_96 . biological_region 94250 94254 0.999 - . logic_name=eponine scaffold_96 . biological_region 94592 94593 0.999 - . logic_name=eponine scaffold_96 . biological_region 94673 94679 0.999 - . logic_name=eponine scaffold_96 . biological_region 94718 94726 0.999 - . logic_name=eponine scaffold_96 . biological_region 94728 94733 0.999 + . logic_name=eponine scaffold_96 . biological_region 94770 94774 0.999 - . logic_name=eponine scaffold_96 . biological_region 94774 94782 0.999 + . logic_name=eponine scaffold_96 . biological_region 95190 95198 0.999 - . logic_name=eponine scaffold_96 . biological_region 95752 95755 0.999 - . logic_name=eponine scaffold_96 . biological_region 95788 95795 0.999 - . logic_name=eponine scaffold_96 . biological_region 95812 95815 0.999 - . logic_name=eponine scaffold_96 . biological_region 95849 95854 0.999 - . logic_name=eponine scaffold_96 . biological_region 96050 96054 0.999 - . logic_name=eponine scaffold_96 . biological_region 96283 96286 0.999 + . logic_name=eponine scaffold_96 ensembl protein_coding_gene 95474 97567 . + . ID=Phyra83779;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000017;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 95474 97567 . + . ID=Phyra83779;Parent=Phyra83779;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 95474 97567 . + 0 ID=Phyra83779;Parent=Phyra83779;rank=1 scaffold_96 . exon 95474 97567 . + . ID=Phyra83779.1;Parent=Phyra83779;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 93486 95189 . + . ID=Phyra96668;biotype=protein_coding;external_name=C_scaffold_96000002;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 93486 95189 . + . ID=Phyra96668;Parent=Phyra96668;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 93486 93689 . + 0 ID=Phyra96668;Parent=Phyra96668;rank=1 scaffold_96 . exon 93486 93689 . + . ID=Phyra96668.1;Parent=Phyra96668;constitutive=1;rank=1 scaffold_96 . CDS 93741 94909 . + 0 ID=Phyra96668;Parent=Phyra96668;rank=2 scaffold_96 . exon 93741 94909 . + . ID=Phyra96668.2;Parent=Phyra96668;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_96 . CDS 94955 95189 . + 0 ID=Phyra96668;Parent=Phyra96668;rank=3 scaffold_96 . exon 94955 95189 . + . ID=Phyra96668.3;Parent=Phyra96668;constitutive=1;ensembl_phase=2;rank=3 scaffold_96 ensembl protein_coding_gene 100162 100896 . + . ID=Phyra54812;biotype=protein_coding;external_name=gwEuk.96.9.1;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 100162 100896 . + . ID=Phyra54812;Parent=Phyra54812;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 100162 100246 . + 0 ID=Phyra54812;Parent=Phyra54812;rank=1 scaffold_96 . exon 100162 100246 . + . ID=Phyra54812.1;Parent=Phyra54812;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 . CDS 100313 100896 . + 0 ID=Phyra54812;Parent=Phyra54812;rank=2 scaffold_96 . exon 100313 100896 . + . ID=Phyra54812.2;Parent=Phyra54812;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 ensembl protein_coding_gene 98506 99743 . + . ID=Phyra83780;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000018;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 98506 99743 . + . ID=Phyra83780;Parent=Phyra83780;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 98506 99271 . + 0 ID=Phyra83780;Parent=Phyra83780;rank=1 scaffold_96 . exon 98506 99271 . + . ID=Phyra83780.1;Parent=Phyra83780;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 . CDS 99346 99743 . + 0 ID=Phyra83780;Parent=Phyra83780;rank=2 scaffold_96 . exon 99346 99743 . + . ID=Phyra83780.2;Parent=Phyra83780;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 ensembl protein_coding_gene 104981 106143 . + . ID=Phyra83782;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000020;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 104981 106143 . + . ID=Phyra83782;Parent=Phyra83782;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 104981 105757 . + 0 ID=Phyra83782;Parent=Phyra83782;rank=1 scaffold_96 . exon 104981 105757 . + . ID=Phyra83782.1;Parent=Phyra83782;constitutive=1;rank=1 scaffold_96 . CDS 105829 106143 . + 0 ID=Phyra83782;Parent=Phyra83782;rank=2 scaffold_96 . exon 105829 106143 . + . ID=Phyra83782.2;Parent=Phyra83782;constitutive=1;rank=2 scaffold_96 ensembl protein_coding_gene 106202 110067 . - . ID=Phyra96675;biotype=protein_coding;external_name=C_scaffold_96000009;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 106202 110067 . - . ID=Phyra96675;Parent=Phyra96675;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 106202 106212 . - 0 ID=Phyra96675;Parent=Phyra96675;rank=9 scaffold_96 . exon 106202 106212 . - . ID=Phyra96675.9;Parent=Phyra96675;constitutive=1;ensembl_phase=1;rank=9 scaffold_96 . CDS 106254 107726 . - 0 ID=Phyra96675;Parent=Phyra96675;rank=8 scaffold_96 . exon 106254 107726 . - . ID=Phyra96675.8;Parent=Phyra96675;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_96 . CDS 107872 107957 . - 0 ID=Phyra96675;Parent=Phyra96675;rank=7 scaffold_96 . CDS 108377 108556 . - 0 ID=Phyra96675;Parent=Phyra96675;rank=6 scaffold_96 . CDS 108660 108755 . - 0 ID=Phyra96675;Parent=Phyra96675;rank=5 scaffold_96 . CDS 108818 109050 . - 0 ID=Phyra96675;Parent=Phyra96675;rank=4 scaffold_96 . CDS 109126 109395 . - 0 ID=Phyra96675;Parent=Phyra96675;rank=3 scaffold_96 . CDS 109633 109918 . - 0 ID=Phyra96675;Parent=Phyra96675;rank=2 scaffold_96 . CDS 109964 110067 . - 0 ID=Phyra96675;Parent=Phyra96675;rank=1 scaffold_96 . biological_region 106786 106788 0.999 - . logic_name=eponine scaffold_96 . repeat_region 109362 109398 . ? . description=trf scaffold_96 . biological_region 109915 109919 0.999 + . logic_name=eponine scaffold_96 . biological_region 109948 109952 0.999 + . logic_name=eponine scaffold_96 . repeat_region 112650 112657 . ? . description=dust scaffold_96 . repeat_region 114793 114807 . ? . description=dust scaffold_96 ensembl protein_coding_gene 112941 114293 . + . ID=Phyra83785;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000023;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 112941 114293 . + . ID=Phyra83785;Parent=Phyra83785;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 112941 114293 . + 0 ID=Phyra83785;Parent=Phyra83785;rank=1 scaffold_96 . exon 112941 114293 . + . ID=Phyra83785.1;Parent=Phyra83785;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 114902 120602 . + . ID=Phyra83786;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000024;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 114902 120602 . + . ID=Phyra83786;Parent=Phyra83786;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 114902 117473 . + 0 ID=Phyra83786;Parent=Phyra83786;rank=1 scaffold_96 . exon 114902 117473 . + . ID=Phyra83786.1;Parent=Phyra83786;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 . CDS 118530 118573 . + 0 ID=Phyra83786;Parent=Phyra83786;rank=2 scaffold_96 . CDS 118936 119866 . + 0 ID=Phyra83786;Parent=Phyra83786;rank=3 scaffold_96 . CDS 120424 120602 . + 0 ID=Phyra83786;Parent=Phyra83786;rank=4 scaffold_96 . exon 107872 107957 . - . ID=Phyra96675.7;Parent=Phyra96675;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_96 . exon 108377 108556 . - . ID=Phyra96675.6;Parent=Phyra96675;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_96 . exon 108660 108755 . - . ID=Phyra96675.5;Parent=Phyra96675;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_96 . exon 108818 109050 . - . ID=Phyra96675.4;Parent=Phyra96675;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_96 . exon 109126 109395 . - . ID=Phyra96675.3;Parent=Phyra96675;constitutive=1;rank=3 scaffold_96 . exon 109633 109918 . - . ID=Phyra96675.2;Parent=Phyra96675;constitutive=1;ensembl_phase=2;rank=2 scaffold_96 . exon 109964 110067 . - . ID=Phyra96675.1;Parent=Phyra96675;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_96 ensembl protein_coding_gene 110927 112225 . - . ID=Phyra96676;biotype=protein_coding;external_name=C_scaffold_96000010;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 110927 112225 . - . ID=Phyra96676;Parent=Phyra96676;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 110927 111263 . - 0 ID=Phyra96676;Parent=Phyra96676;rank=4 scaffold_96 . exon 110927 111263 . - . ID=Phyra96676.4;Parent=Phyra96676;constitutive=1;ensembl_phase=2;rank=4 scaffold_96 . CDS 111357 111616 . - 0 ID=Phyra96676;Parent=Phyra96676;rank=3 scaffold_96 . exon 111357 111616 . - . ID=Phyra96676.3;Parent=Phyra96676;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_96 . CDS 111686 111815 . - 0 ID=Phyra96676;Parent=Phyra96676;rank=2 scaffold_96 . exon 111686 111815 . - . ID=Phyra96676.2;Parent=Phyra96676;constitutive=1;ensembl_phase=2;rank=2 scaffold_96 . CDS 111936 112225 . - 0 ID=Phyra96676;Parent=Phyra96676;rank=1 scaffold_96 . exon 111936 112225 . - . ID=Phyra96676.1;Parent=Phyra96676;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_96 . exon 118530 118573 . + . ID=Phyra83786.2;Parent=Phyra83786;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 . exon 118936 119866 . + . ID=Phyra83786.3;Parent=Phyra83786;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_96 . exon 120424 120602 . + . ID=Phyra83786.4;Parent=Phyra83786;constitutive=1;ensembl_phase=1;rank=4 scaffold_96 ensembl protein_coding_gene 121883 126018 . - . ID=Phyra83787;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000025;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 121883 126018 . - . ID=Phyra83787;Parent=Phyra83787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 121883 122619 . - 0 ID=Phyra83787;Parent=Phyra83787;rank=2 scaffold_96 . exon 121883 122619 . - . ID=Phyra83787.2;Parent=Phyra83787;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 . CDS 122640 126018 . - 0 ID=Phyra83787;Parent=Phyra83787;rank=1 scaffold_96 . exon 122640 126018 . - . ID=Phyra83787.1;Parent=Phyra83787;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 . biological_region 128703 128706 0.999 + . logic_name=eponine scaffold_96 . biological_region 131660 131663 0.999 + . logic_name=eponine scaffold_96 . repeat_region 133985 134017 . ? . description=trf scaffold_96 ensembl protein_coding_gene 126785 130930 . - . ID=Phyra83788;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000026;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 126785 130930 . - . ID=Phyra83788;Parent=Phyra83788;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 126785 130930 . - 0 ID=Phyra83788;Parent=Phyra83788;rank=1 scaffold_96 . exon 126785 130930 . - . ID=Phyra83788.1;Parent=Phyra83788;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 133511 133891 . - . ID=Phyra83789;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000027;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 133511 133891 . - . ID=Phyra83789;Parent=Phyra83789;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 133511 133891 . - 0 ID=Phyra83789;Parent=Phyra83789;rank=1 scaffold_96 . exon 133511 133891 . - . ID=Phyra83789.1;Parent=Phyra83789;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 134679 136065 . + . ID=Phyra83790;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000028;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 134679 136065 . + . ID=Phyra83790;Parent=Phyra83790;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 134679 135709 . + 0 ID=Phyra83790;Parent=Phyra83790;rank=1 scaffold_96 . exon 134679 135709 . + . ID=Phyra83790.1;Parent=Phyra83790;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_96 . CDS 135750 136065 . + 0 ID=Phyra83790;Parent=Phyra83790;rank=2 scaffold_96 . exon 135750 136065 . + . ID=Phyra83790.2;Parent=Phyra83790;constitutive=1;ensembl_phase=2;rank=2 scaffold_96 ensembl protein_coding_gene 138490 140694 . - . ID=Phyra54840;biotype=protein_coding;external_name=gwEuk.96.37.1;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 138490 140694 . - . ID=Phyra54840;Parent=Phyra54840;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 138490 138755 . - 0 ID=Phyra54840;Parent=Phyra54840;rank=2 scaffold_96 . exon 138490 138755 . - . ID=Phyra54840.2;Parent=Phyra54840;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 . CDS 138942 140694 . - 0 ID=Phyra54840;Parent=Phyra54840;rank=1 scaffold_96 . exon 138942 140694 . - . ID=Phyra54840.1;Parent=Phyra54840;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 ensembl protein_coding_gene 136963 138285 . + . ID=Phyra83791;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000029;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 136963 138285 . + . ID=Phyra83791;Parent=Phyra83791;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 136963 137036 . + 0 ID=Phyra83791;Parent=Phyra83791;rank=1 scaffold_96 . exon 136963 137036 . + . ID=Phyra83791.1;Parent=Phyra83791;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_96 . CDS 137127 138285 . + 0 ID=Phyra83791;Parent=Phyra83791;rank=2 scaffold_96 . exon 137127 138285 . + . ID=Phyra83791.2;Parent=Phyra83791;constitutive=1;ensembl_phase=2;rank=2 scaffold_96 ensembl protein_coding_gene 141977 143597 . + . ID=Phyra96679;biotype=protein_coding;external_name=C_scaffold_96000013;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 141977 143597 . + . ID=Phyra96679;Parent=Phyra96679;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 141977 142597 . + 0 ID=Phyra96679;Parent=Phyra96679;rank=1 scaffold_96 . exon 141977 142597 . + . ID=Phyra96679.1;Parent=Phyra96679;constitutive=1;rank=1 scaffold_96 . CDS 142656 142757 . + 0 ID=Phyra96679;Parent=Phyra96679;rank=2 scaffold_96 . exon 142656 142757 . + . ID=Phyra96679.2;Parent=Phyra96679;constitutive=1;rank=2 scaffold_96 . CDS 142824 142905 . + 0 ID=Phyra96679;Parent=Phyra96679;rank=3 scaffold_96 . exon 142824 142905 . + . ID=Phyra96679.3;Parent=Phyra96679;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_96 . CDS 142978 143105 . + 0 ID=Phyra96679;Parent=Phyra96679;rank=4 scaffold_96 . exon 142978 143105 . + . ID=Phyra96679.4;Parent=Phyra96679;constitutive=1;ensembl_phase=1;rank=4 scaffold_96 . CDS 143205 143480 . + 0 ID=Phyra96679;Parent=Phyra96679;rank=5 scaffold_96 . exon 143205 143480 . + . ID=Phyra96679.5;Parent=Phyra96679;constitutive=1;rank=5 scaffold_96 . CDS 143583 143597 . + 0 ID=Phyra96679;Parent=Phyra96679;rank=6 scaffold_96 . exon 143583 143597 . + . ID=Phyra96679.6;Parent=Phyra96679;constitutive=1;rank=6 scaffold_96 . repeat_region 147529 147638 . ? . description=dust scaffold_96 . repeat_region 147576 147641 . ? . description=trf scaffold_96 . biological_region 148458 148467 0.999 + . logic_name=eponine scaffold_96 . biological_region 148469 148475 0.999 - . logic_name=eponine scaffold_96 . biological_region 155082 155085 0.999 + . logic_name=eponine scaffold_96 ensembl protein_coding_gene 148061 148528 . - . ID=Phyra83794;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000032;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 148061 148528 . - . ID=Phyra83794;Parent=Phyra83794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 148061 148528 . - 0 ID=Phyra83794;Parent=Phyra83794;rank=1 scaffold_96 . exon 148061 148528 . - . ID=Phyra83794.1;Parent=Phyra83794;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 148846 150915 . + . ID=Phyra83795;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000033;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 148846 150915 . + . ID=Phyra83795;Parent=Phyra83795;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 148846 148848 . + 0 ID=Phyra83795;Parent=Phyra83795;rank=1 scaffold_96 . exon 148846 148848 . + . ID=Phyra83795.1;Parent=Phyra83795;constitutive=1;rank=1 scaffold_96 . CDS 148907 148960 . + 0 ID=Phyra83795;Parent=Phyra83795;rank=2 scaffold_96 . exon 148907 148960 . + . ID=Phyra83795.2;Parent=Phyra83795;constitutive=1;rank=2 scaffold_96 . CDS 149031 149219 . + 0 ID=Phyra83795;Parent=Phyra83795;rank=3 scaffold_96 . exon 149031 149219 . + . ID=Phyra83795.3;Parent=Phyra83795;constitutive=1;rank=3 scaffold_96 . CDS 149283 149366 . + 0 ID=Phyra83795;Parent=Phyra83795;rank=4 scaffold_96 . exon 149283 149366 . + . ID=Phyra83795.4;Parent=Phyra83795;constitutive=1;rank=4 scaffold_96 . CDS 149553 149575 . + 0 ID=Phyra83795;Parent=Phyra83795;rank=5 scaffold_96 . exon 149553 149575 . + . ID=Phyra83795.5;Parent=Phyra83795;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_96 . CDS 149611 149787 . + 0 ID=Phyra83795;Parent=Phyra83795;rank=6 scaffold_96 . exon 149611 149787 . + . ID=Phyra83795.6;Parent=Phyra83795;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_96 . CDS 149841 150915 . + 0 ID=Phyra83795;Parent=Phyra83795;rank=7 scaffold_96 . exon 149841 150915 . + . ID=Phyra83795.7;Parent=Phyra83795;constitutive=1;ensembl_phase=2;rank=7 scaffold_96 ensembl protein_coding_gene 151264 155805 . - . ID=Phyra83796;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000034;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 151264 155805 . - . ID=Phyra83796;Parent=Phyra83796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 151264 155805 . - 0 ID=Phyra83796;Parent=Phyra83796;rank=1 scaffold_96 . exon 151264 155805 . - . ID=Phyra83796.1;Parent=Phyra83796;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 156046 159046 . - . ID=Phyra83797;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000035;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 156046 159046 . - . ID=Phyra83797;Parent=Phyra83797;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 156046 158742 . - 0 ID=Phyra83797;Parent=Phyra83797;rank=2 scaffold_96 . exon 156046 158742 . - . ID=Phyra83797.2;Parent=Phyra83797;constitutive=1;rank=2 scaffold_96 . CDS 158825 159046 . - 0 ID=Phyra83797;Parent=Phyra83797;rank=1 scaffold_96 . exon 158825 159046 . - . ID=Phyra83797.1;Parent=Phyra83797;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 160080 162197 . + . ID=Phyra83798;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000036;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 160080 162197 . + . ID=Phyra83798;Parent=Phyra83798;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 160080 162197 . + 0 ID=Phyra83798;Parent=Phyra83798;rank=1 scaffold_96 . exon 160080 162197 . + . ID=Phyra83798.1;Parent=Phyra83798;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 162271 163777 . - . ID=Phyra83799;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000037;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 162271 163777 . - . ID=Phyra83799;Parent=Phyra83799;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 162271 162479 . - 0 ID=Phyra83799;Parent=Phyra83799;rank=5 scaffold_96 . exon 162271 162479 . - . ID=Phyra83799.5;Parent=Phyra83799;constitutive=1;ensembl_phase=1;rank=5 scaffold_96 . CDS 162548 162605 . - 0 ID=Phyra83799;Parent=Phyra83799;rank=4 scaffold_96 . exon 162548 162605 . - . ID=Phyra83799.4;Parent=Phyra83799;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_96 . CDS 162683 163348 . - 0 ID=Phyra83799;Parent=Phyra83799;rank=3 scaffold_96 . exon 162683 163348 . - . ID=Phyra83799.3;Parent=Phyra83799;constitutive=1;rank=3 scaffold_96 . CDS 163419 163634 . - 0 ID=Phyra83799;Parent=Phyra83799;rank=2 scaffold_96 . exon 163419 163634 . - . ID=Phyra83799.2;Parent=Phyra83799;constitutive=1;rank=2 scaffold_96 . CDS 163694 163777 . - 0 ID=Phyra83799;Parent=Phyra83799;rank=1 scaffold_96 . exon 163694 163777 . - . ID=Phyra83799.1;Parent=Phyra83799;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 163924 167349 . + . ID=Phyra83800;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000038;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 163924 167349 . + . ID=Phyra83800;Parent=Phyra83800;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 163924 167349 . + 0 ID=Phyra83800;Parent=Phyra83800;rank=1 scaffold_96 . exon 163924 167349 . + . ID=Phyra83800.1;Parent=Phyra83800;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 169108 169929 . + . ID=Phyra83801;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_96000039;logic_name=jgi_phyra1 scaffold_96 ensembl transcript 169108 169929 . + . ID=Phyra83801;Parent=Phyra83801;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_96 . CDS 169108 169929 . + 0 ID=Phyra83801;Parent=Phyra83801;rank=1 scaffold_96 . exon 169108 169929 . + . ID=Phyra83801.1;Parent=Phyra83801;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_95 1 175400 scaffold_95 . repeat_region 5718 7893 . ? . description=dust scaffold_95 . repeat_region 9966 27242 . ? . description=dust scaffold_95 . repeat_region 27246 27347 . ? . description=trf scaffold_95 . repeat_region 27248 27332 . ? . description=dust scaffold_95 . repeat_region 27250 27347 . ? . description=trf scaffold_95 . repeat_region 27282 27347 . ? . description=trf scaffold_95 ensembl protein_coding_gene 27638 28261 . + . ID=Phyra83732;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000001;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 27638 28261 . + . ID=Phyra83732;Parent=Phyra83732;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 27638 28261 . + 0 ID=Phyra83732;Parent=Phyra83732;rank=1 scaffold_95 . exon 27638 28261 . + . ID=Phyra83732.1;Parent=Phyra83732;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 36546 37384 . + . ID=Phyra83733;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000002;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 36546 37384 . + . ID=Phyra83733;Parent=Phyra83733;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 36546 36770 . + 0 ID=Phyra83733;Parent=Phyra83733;rank=1 scaffold_95 . exon 36546 36770 . + . ID=Phyra83733.1;Parent=Phyra83733;constitutive=1;rank=1 scaffold_95 . CDS 36836 37384 . + 0 ID=Phyra83733;Parent=Phyra83733;rank=2 scaffold_95 . exon 36836 37384 . + . ID=Phyra83733.2;Parent=Phyra83733;constitutive=1;rank=2 scaffold_95 . repeat_region 39734 39783 . ? . description=dust scaffold_95 . repeat_region 39854 39889 . ? . description=trf scaffold_95 . repeat_region 41055 41062 . ? . description=dust scaffold_95 . repeat_region 42021 42250 . + . description=GypsyPi-1c_LTR scaffold_95 . repeat_region 44465 45018 . + . description=Gypsy-2-I_PI-int scaffold_95 . repeat_region 46244 46289 . ? . description=trf scaffold_95 . repeat_region 46321 46439 . ? . description=trf scaffold_95 . biological_region 51201 51204 0.999 + . logic_name=eponine scaffold_95 . biological_region 53139 53141 0.999 - . logic_name=eponine scaffold_95 . biological_region 53195 53197 0.999 + . logic_name=eponine scaffold_95 . biological_region 53575 53576 0.999 - . logic_name=eponine scaffold_95 . biological_region 54641 54642 0.999 - . logic_name=eponine scaffold_95 . biological_region 57091 57094 0.999 + . logic_name=eponine scaffold_95 ensembl protein_coding_gene 52475 53689 . - . ID=Phyra83734;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000003;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 52475 53689 . - . ID=Phyra83734;Parent=Phyra83734;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 52475 53689 . - 0 ID=Phyra83734;Parent=Phyra83734;rank=1 scaffold_95 . exon 52475 53689 . - . ID=Phyra83734.1;Parent=Phyra83734;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 59356 60966 . + . ID=Phyra83735;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000004;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 59356 60966 . + . ID=Phyra83735;Parent=Phyra83735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 59356 59383 . + 0 ID=Phyra83735;Parent=Phyra83735;rank=1 scaffold_95 . exon 59356 59383 . + . ID=Phyra83735.1;Parent=Phyra83735;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 . CDS 59432 59499 . + 0 ID=Phyra83735;Parent=Phyra83735;rank=2 scaffold_95 . exon 59432 59499 . + . ID=Phyra83735.2;Parent=Phyra83735;constitutive=1;ensembl_phase=1;rank=2 scaffold_95 . CDS 59607 60808 . + 0 ID=Phyra83735;Parent=Phyra83735;rank=3 scaffold_95 . exon 59607 60808 . + . ID=Phyra83735.3;Parent=Phyra83735;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_95 . CDS 60948 60966 . + 0 ID=Phyra83735;Parent=Phyra83735;rank=4 scaffold_95 . exon 60948 60966 . + . ID=Phyra83735.4;Parent=Phyra83735;constitutive=1;ensembl_phase=2;rank=4 scaffold_95 ensembl protein_coding_gene 62805 63686 . + . ID=Phyra83736;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000005;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 62805 63686 . + . ID=Phyra83736;Parent=Phyra83736;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 62805 63686 . + 0 ID=Phyra83736;Parent=Phyra83736;rank=1 scaffold_95 . exon 62805 63686 . + . ID=Phyra83736.1;Parent=Phyra83736;constitutive=1;rank=1 scaffold_95 . repeat_region 70076 70083 . ? . description=dust scaffold_95 ensembl protein_coding_gene 72993 75361 . + . ID=Phyra83737;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000006;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 72993 75361 . + . ID=Phyra83737;Parent=Phyra83737;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 72993 75246 . + 0 ID=Phyra83737;Parent=Phyra83737;rank=1 scaffold_95 . exon 72993 75246 . + . ID=Phyra83737.1;Parent=Phyra83737;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 . CDS 75312 75361 . + 0 ID=Phyra83737;Parent=Phyra83737;rank=2 scaffold_95 . exon 75312 75361 . + . ID=Phyra83737.2;Parent=Phyra83737;constitutive=1;ensembl_phase=1;rank=2 scaffold_95 . biological_region 84575 84580 0.999 - . logic_name=eponine scaffold_95 . biological_region 87588 87592 0.999 + . logic_name=eponine scaffold_95 ensembl protein_coding_gene 78041 80158 . + . ID=Phyra83738;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000007;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 78041 80158 . + . ID=Phyra83738;Parent=Phyra83738;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 78041 80158 . + 0 ID=Phyra83738;Parent=Phyra83738;rank=1 scaffold_95 . exon 78041 80158 . + . ID=Phyra83738.1;Parent=Phyra83738;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 83296 84546 . + . ID=Phyra83739;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000008;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 83296 84546 . + . ID=Phyra83739;Parent=Phyra83739;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 83296 84546 . + 0 ID=Phyra83739;Parent=Phyra83739;rank=1 scaffold_95 . exon 83296 84546 . + . ID=Phyra83739.1;Parent=Phyra83739;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 85519 86735 . - . ID=Phyra83740;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000009;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 85519 86735 . - . ID=Phyra83740;Parent=Phyra83740;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 85519 86298 . - 0 ID=Phyra83740;Parent=Phyra83740;rank=3 scaffold_95 . exon 85519 86298 . - . ID=Phyra83740.3;Parent=Phyra83740;constitutive=1;rank=3 scaffold_95 . CDS 86373 86579 . - 0 ID=Phyra83740;Parent=Phyra83740;rank=2 scaffold_95 . exon 86373 86579 . - . ID=Phyra83740.2;Parent=Phyra83740;constitutive=1;rank=2 scaffold_95 . CDS 86640 86735 . - 0 ID=Phyra83740;Parent=Phyra83740;rank=1 scaffold_95 . exon 86640 86735 . - . ID=Phyra83740.1;Parent=Phyra83740;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 87082 88495 . - . ID=Phyra83741;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000010;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 87082 88495 . - . ID=Phyra83741;Parent=Phyra83741;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 87082 87402 . - 0 ID=Phyra83741;Parent=Phyra83741;rank=3 scaffold_95 . exon 87082 87402 . - . ID=Phyra83741.3;Parent=Phyra83741;constitutive=1;rank=3 scaffold_95 . CDS 87479 87804 . - 0 ID=Phyra83741;Parent=Phyra83741;rank=2 scaffold_95 . exon 87479 87804 . - . ID=Phyra83741.2;Parent=Phyra83741;constitutive=1;ensembl_phase=1;rank=2 scaffold_95 . CDS 87850 88495 . - 0 ID=Phyra83741;Parent=Phyra83741;rank=1 scaffold_95 . exon 87850 88495 . - . ID=Phyra83741.1;Parent=Phyra83741;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 ensembl protein_coding_gene 88753 89643 . - . ID=Phyra83742;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000011;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 88753 89643 . - . ID=Phyra83742;Parent=Phyra83742;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 88753 88985 . - 0 ID=Phyra83742;Parent=Phyra83742;rank=2 scaffold_95 . exon 88753 88985 . - . ID=Phyra83742.2;Parent=Phyra83742;constitutive=1;ensembl_phase=1;rank=2 scaffold_95 . CDS 89046 89643 . - 0 ID=Phyra83742;Parent=Phyra83742;rank=1 scaffold_95 . exon 89046 89643 . - . ID=Phyra83742.1;Parent=Phyra83742;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 ensembl protein_coding_gene 90665 96372 . + . ID=Phyra83743;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000012;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 90665 96372 . + . ID=Phyra83743;Parent=Phyra83743;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 90665 90874 . + 0 ID=Phyra83743;Parent=Phyra83743;rank=1 scaffold_95 . exon 90665 90874 . + . ID=Phyra83743.1;Parent=Phyra83743;constitutive=1;rank=1 scaffold_95 . CDS 90965 91029 . + 0 ID=Phyra83743;Parent=Phyra83743;rank=2 scaffold_95 . exon 90965 91029 . + . ID=Phyra83743.2;Parent=Phyra83743;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_95 . CDS 91094 92972 . + 0 ID=Phyra83743;Parent=Phyra83743;rank=3 scaffold_95 . exon 91094 92972 . + . ID=Phyra83743.3;Parent=Phyra83743;constitutive=1;ensembl_phase=2;rank=3 scaffold_95 . CDS 93394 93463 . + 0 ID=Phyra83743;Parent=Phyra83743;rank=4 scaffold_95 . exon 93394 93463 . + . ID=Phyra83743.4;Parent=Phyra83743;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_95 . CDS 93590 93655 . + 0 ID=Phyra83743;Parent=Phyra83743;rank=5 scaffold_95 . exon 93590 93655 . + . ID=Phyra83743.5;Parent=Phyra83743;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_95 . CDS 93737 93850 . + 0 ID=Phyra83743;Parent=Phyra83743;rank=6 scaffold_95 . exon 93737 93850 . + . ID=Phyra83743.6;Parent=Phyra83743;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_95 . CDS 94157 94287 . + 0 ID=Phyra83743;Parent=Phyra83743;rank=7 scaffold_95 . exon 94157 94287 . + . ID=Phyra83743.7;Parent=Phyra83743;constitutive=1;ensembl_phase=1;rank=7 scaffold_95 . CDS 94492 96372 . + 0 ID=Phyra83743;Parent=Phyra83743;rank=8 scaffold_95 . exon 94492 96372 . + . ID=Phyra83743.8;Parent=Phyra83743;constitutive=1;rank=8 scaffold_95 ensembl protein_coding_gene 96431 96916 . - . ID=Phyra83744;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000013;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 96431 96916 . - . ID=Phyra83744;Parent=Phyra83744;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 96431 96916 . - 0 ID=Phyra83744;Parent=Phyra83744;rank=1 scaffold_95 . exon 96431 96916 . - . ID=Phyra83744.1;Parent=Phyra83744;constitutive=1;rank=1 scaffold_95 . biological_region 99128 99136 0.999 - . logic_name=eponine scaffold_95 . biological_region 99152 99156 0.999 - . logic_name=eponine scaffold_95 . biological_region 104697 104701 0.999 + . logic_name=eponine scaffold_95 . biological_region 106723 106725 0.999 + . logic_name=eponine scaffold_95 ensembl protein_coding_gene 103768 104922 . + . ID=Phyra72156;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_95000001;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 103768 104922 . + . ID=Phyra72156;Parent=Phyra72156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 103768 104922 . + 0 ID=Phyra72156;Parent=Phyra72156;rank=1 scaffold_95 . exon 103768 104922 . + . ID=Phyra72156.1;Parent=Phyra72156;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 97452 98318 . + . ID=Phyra83745;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000014;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 97452 98318 . + . ID=Phyra83745;Parent=Phyra83745;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 97452 98318 . + 0 ID=Phyra83745;Parent=Phyra83745;rank=1 scaffold_95 . exon 97452 98318 . + . ID=Phyra83745.1;Parent=Phyra83745;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 98571 101458 . - . ID=Phyra83746;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000015;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 98571 101458 . - . ID=Phyra83746;Parent=Phyra83746;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 98571 98880 . - 0 ID=Phyra83746;Parent=Phyra83746;rank=4 scaffold_95 . exon 98571 98880 . - . ID=Phyra83746.4;Parent=Phyra83746;constitutive=1;ensembl_phase=2;rank=4 scaffold_95 . CDS 98952 100860 . - 0 ID=Phyra83746;Parent=Phyra83746;rank=3 scaffold_95 . exon 98952 100860 . - . ID=Phyra83746.3;Parent=Phyra83746;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_95 . CDS 100967 100990 . - 0 ID=Phyra83746;Parent=Phyra83746;rank=2 scaffold_95 . exon 100967 100990 . - . ID=Phyra83746.2;Parent=Phyra83746;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_95 . CDS 101050 101458 . - 0 ID=Phyra83746;Parent=Phyra83746;rank=1 scaffold_95 . exon 101050 101458 . - . ID=Phyra83746.1;Parent=Phyra83746;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 ensembl protein_coding_gene 102800 103453 . + . ID=Phyra83747;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000016;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 102800 103453 . + . ID=Phyra83747;Parent=Phyra83747;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 102800 103453 . + 0 ID=Phyra83747;Parent=Phyra83747;rank=1 scaffold_95 . exon 102800 103453 . + . ID=Phyra83747.1;Parent=Phyra83747;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 105093 105980 . - . ID=Phyra83749;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000018;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 105093 105980 . - . ID=Phyra83749;Parent=Phyra83749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 105093 105980 . - 0 ID=Phyra83749;Parent=Phyra83749;rank=1 scaffold_95 . exon 105093 105980 . - . ID=Phyra83749.1;Parent=Phyra83749;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 107447 107887 . - . ID=Phyra83750;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000019;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 107447 107887 . - . ID=Phyra83750;Parent=Phyra83750;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 107447 107887 . - 0 ID=Phyra83750;Parent=Phyra83750;rank=1 scaffold_95 . exon 107447 107887 . - . ID=Phyra83750.1;Parent=Phyra83750;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 108421 111011 . + . ID=Phyra83751;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000020;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 108421 111011 . + . ID=Phyra83751;Parent=Phyra83751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 108421 110943 . + 0 ID=Phyra83751;Parent=Phyra83751;rank=1 scaffold_95 . exon 108421 110943 . + . ID=Phyra83751.1;Parent=Phyra83751;constitutive=1;rank=1 scaffold_95 . CDS 110994 111011 . + 0 ID=Phyra83751;Parent=Phyra83751;rank=2 scaffold_95 . exon 110994 111011 . + . ID=Phyra83751.2;Parent=Phyra83751;constitutive=1;rank=2 scaffold_95 ensembl protein_coding_gene 114131 115093 . + . ID=Phyra83752;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000021;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 114131 115093 . + . ID=Phyra83752;Parent=Phyra83752;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 114131 115093 . + 0 ID=Phyra83752;Parent=Phyra83752;rank=1 scaffold_95 . exon 114131 115093 . + . ID=Phyra83752.1;Parent=Phyra83752;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 115399 119535 . - . ID=Phyra83753;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000022;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 115399 119535 . - . ID=Phyra83753;Parent=Phyra83753;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 115399 117527 . - 0 ID=Phyra83753;Parent=Phyra83753;rank=3 scaffold_95 . exon 115399 117527 . - . ID=Phyra83753.3;Parent=Phyra83753;constitutive=1;ensembl_phase=1;rank=3 scaffold_95 . CDS 117957 118160 . - 0 ID=Phyra83753;Parent=Phyra83753;rank=2 scaffold_95 . CDS 118485 119535 . - 0 ID=Phyra83753;Parent=Phyra83753;rank=1 scaffold_95 . biological_region 121606 121612 0.999 - . logic_name=eponine scaffold_95 . exon 117957 118160 . - . ID=Phyra83753.2;Parent=Phyra83753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_95 . exon 118485 119535 . - . ID=Phyra83753.1;Parent=Phyra83753;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 ensembl protein_coding_gene 120063 121554 . - . ID=Phyra83754;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000023;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 120063 121554 . - . ID=Phyra83754;Parent=Phyra83754;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 120063 120328 . - 0 ID=Phyra83754;Parent=Phyra83754;rank=2 scaffold_95 . exon 120063 120328 . - . ID=Phyra83754.2;Parent=Phyra83754;constitutive=1;ensembl_phase=1;rank=2 scaffold_95 . CDS 120390 121554 . - 0 ID=Phyra83754;Parent=Phyra83754;rank=1 scaffold_95 . exon 120390 121554 . - . ID=Phyra83754.1;Parent=Phyra83754;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 ensembl protein_coding_gene 122191 125207 . + . ID=Phyra83755;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000024;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 122191 125207 . + . ID=Phyra83755;Parent=Phyra83755;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 122191 122682 . + 0 ID=Phyra83755;Parent=Phyra83755;rank=1 scaffold_95 . exon 122191 122682 . + . ID=Phyra83755.1;Parent=Phyra83755;constitutive=1;rank=1 scaffold_95 . CDS 122761 122892 . + 0 ID=Phyra83755;Parent=Phyra83755;rank=2 scaffold_95 . exon 122761 122892 . + . ID=Phyra83755.2;Parent=Phyra83755;constitutive=1;rank=2 scaffold_95 . CDS 122959 123165 . + 0 ID=Phyra83755;Parent=Phyra83755;rank=3 scaffold_95 . exon 122959 123165 . + . ID=Phyra83755.3;Parent=Phyra83755;constitutive=1;rank=3 scaffold_95 . CDS 123342 124525 . + 0 ID=Phyra83755;Parent=Phyra83755;rank=4 scaffold_95 . exon 123342 124525 . + . ID=Phyra83755.4;Parent=Phyra83755;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_95 . CDS 124643 125207 . + 0 ID=Phyra83755;Parent=Phyra83755;rank=5 scaffold_95 . exon 124643 125207 . + . ID=Phyra83755.5;Parent=Phyra83755;constitutive=1;ensembl_phase=2;rank=5 scaffold_95 ensembl protein_coding_gene 125396 126610 . - . ID=Phyra83756;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000025;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 125396 126610 . - . ID=Phyra83756;Parent=Phyra83756;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 125396 126610 . - 0 ID=Phyra83756;Parent=Phyra83756;rank=1 scaffold_95 . exon 125396 126610 . - . ID=Phyra83756.1;Parent=Phyra83756;constitutive=1;rank=1 scaffold_95 . repeat_region 128160 128173 . ? . description=dust scaffold_95 . repeat_region 128729 128776 . + . description=LSU-rRNA_Hca scaffold_95 . repeat_region 129900 129907 . ? . description=dust scaffold_95 . repeat_region 131983 131992 . ? . description=dust scaffold_95 . repeat_region 133359 133366 . ? . description=dust scaffold_95 . repeat_region 134228 134277 . ? . description=dust scaffold_95 . repeat_region 135880 136090 . - . description=GypsyPi-1c_LTR scaffold_95 . repeat_region 136232 136241 . ? . description=dust scaffold_95 ensembl protein_coding_gene 129092 129961 . - . ID=Phyra83757;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000026;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 129092 129961 . - . ID=Phyra83757;Parent=Phyra83757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 129092 129961 . - 0 ID=Phyra83757;Parent=Phyra83757;rank=1 scaffold_95 . exon 129092 129961 . - . ID=Phyra83757.1;Parent=Phyra83757;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 133305 134174 . + . ID=Phyra83758;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000027;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 133305 134174 . + . ID=Phyra83758;Parent=Phyra83758;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 133305 134174 . + 0 ID=Phyra83758;Parent=Phyra83758;rank=1 scaffold_95 . exon 133305 134174 . + . ID=Phyra83758.1;Parent=Phyra83758;constitutive=1;rank=1 scaffold_95 . biological_region 137599 137603 0.999 + . logic_name=eponine scaffold_95 . repeat_region 138678 138769 . + . description=GypsyPi-1c_I-int scaffold_95 . biological_region 139113 139117 0.999 + . logic_name=eponine scaffold_95 . biological_region 139164 139169 0.999 + . logic_name=eponine scaffold_95 . biological_region 139193 139193 0.999 - . logic_name=eponine scaffold_95 . biological_region 139230 139231 0.999 - . logic_name=eponine scaffold_95 . biological_region 139267 139271 0.999 + . logic_name=eponine scaffold_95 . repeat_region 139795 140643 . + . description=GypsyPi-1c_I-int scaffold_95 . repeat_region 141461 141766 . + . description=GypsyPi-1c_I-int scaffold_95 . repeat_region 142084 142363 . + . description=GypsyPi-1c_I-int scaffold_95 . biological_region 142437 142439 0.999 - . logic_name=eponine scaffold_95 . biological_region 142479 142480 0.999 - . logic_name=eponine scaffold_95 . biological_region 143869 143874 0.999 - . logic_name=eponine scaffold_95 . repeat_region 146131 147307 . - . description=GypsyPi-1c_I-int scaffold_95 ensembl protein_coding_gene 137319 140513 . + . ID=Phyra83759;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000028;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 137319 140513 . + . ID=Phyra83759;Parent=Phyra83759;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 137319 138200 . + 0 ID=Phyra83759;Parent=Phyra83759;rank=1 scaffold_95 . exon 137319 138200 . + . ID=Phyra83759.1;Parent=Phyra83759;constitutive=1;rank=1 scaffold_95 . CDS 138323 138466 . + 0 ID=Phyra83759;Parent=Phyra83759;rank=2 scaffold_95 . exon 138323 138466 . + . ID=Phyra83759.2;Parent=Phyra83759;constitutive=1;rank=2 scaffold_95 . CDS 138542 140452 . + 0 ID=Phyra83759;Parent=Phyra83759;rank=3 scaffold_95 . exon 138542 140452 . + . ID=Phyra83759.3;Parent=Phyra83759;constitutive=1;rank=3 scaffold_95 . CDS 140499 140513 . + 0 ID=Phyra83759;Parent=Phyra83759;rank=4 scaffold_95 . exon 140499 140513 . + . ID=Phyra83759.4;Parent=Phyra83759;constitutive=1;rank=4 scaffold_95 . repeat_region 148152 165259 . ? . description=dust scaffold_95 . repeat_region 167965 167986 . ? . description=trf scaffold_95 . repeat_region 173078 173113 . ? . description=trf scaffold_95 . repeat_region 173078 173113 . ? . description=trf scaffold_95 . repeat_region 173082 173120 . ? . description=trf scaffold_95 . repeat_region 173141 173190 . ? . description=dust scaffold_95 . biological_region 173221 173222 0.999 + . logic_name=eponine scaffold_95 . biological_region 173641 173648 0.999 + . logic_name=eponine scaffold_95 . biological_region 173701 173701 0.999 - . logic_name=eponine scaffold_95 . repeat_region 174267 174286 . ? . description=dust scaffold_95 . repeat_region 175029 175051 . ? . description=trf scaffold_95 . repeat_region 175029 175051 . ? . description=dust scaffold_95 ensembl protein_coding_gene 173403 175313 . + . ID=Phyra72157;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_95000002;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 173403 175313 . + . ID=Phyra72157;Parent=Phyra72157;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 173403 175114 . + 0 ID=Phyra72157;Parent=Phyra72157;rank=1 scaffold_95 . exon 173403 175114 . + . ID=Phyra72157.1;Parent=Phyra72157;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_95 . CDS 175164 175179 . + 0 ID=Phyra72157;Parent=Phyra72157;rank=2 scaffold_95 . exon 175164 175179 . + . ID=Phyra72157.2;Parent=Phyra72157;constitutive=1;ensembl_phase=2;rank=2 scaffold_95 . CDS 175239 175313 . + 0 ID=Phyra72157;Parent=Phyra72157;rank=3 scaffold_95 . exon 175239 175313 . + . ID=Phyra72157.3;Parent=Phyra72157;constitutive=1;rank=3 scaffold_95 ensembl protein_coding_gene 166016 167104 . - . ID=Phyra83760;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000029;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 166016 167104 . - . ID=Phyra83760;Parent=Phyra83760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 166016 167104 . - 0 ID=Phyra83760;Parent=Phyra83760;rank=1 scaffold_95 . exon 166016 167104 . - . ID=Phyra83760.1;Parent=Phyra83760;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 171454 172134 . + . ID=Phyra83761;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_95000030;logic_name=jgi_phyra1 scaffold_95 ensembl transcript 171454 172134 . + . ID=Phyra83761;Parent=Phyra83761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_95 . CDS 171454 172134 . + 0 ID=Phyra83761;Parent=Phyra83761;rank=1 scaffold_95 . exon 171454 172134 . + . ID=Phyra83761.1;Parent=Phyra83761;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_94 1 180547 scaffold_94 . biological_region 41 47 0.999 + . logic_name=eponine scaffold_94 . biological_region 69 71 0.999 + . logic_name=eponine scaffold_94 . biological_region 109 114 0.999 + . logic_name=eponine scaffold_94 . biological_region 129 132 0.999 + . logic_name=eponine scaffold_94 . biological_region 181 186 0.999 + . logic_name=eponine scaffold_94 . biological_region 261 262 0.999 - . logic_name=eponine scaffold_94 . biological_region 947 951 0.999 + . logic_name=eponine scaffold_94 . repeat_region 1630 3528 . ? . description=dust scaffold_94 . repeat_region 5687 6653 . ? . description=dust scaffold_94 . repeat_region 6948 6955 . ? . description=dust scaffold_94 . repeat_region 8079 8124 . ? . description=trf scaffold_94 . repeat_region 8693 9800 . ? . description=dust scaffold_94 ensembl protein_coding_gene 1 3859 . + . ID=Phyra83691;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000001;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 1 3859 . + . ID=Phyra83691;Parent=Phyra83691;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . exon 1 1627 . + . ID=Phyra83691.1;Parent=Phyra83691;constitutive=1;ensembl_phase=-1;rank=1 scaffold_94 . CDS 2 1627 . + 0 ID=Phyra83691;Parent=Phyra83691;rank=1 scaffold_94 . CDS 3698 3859 . + 0 ID=Phyra83691;Parent=Phyra83691;rank=2 scaffold_94 . exon 3698 3859 . + . ID=Phyra83691.2;Parent=Phyra83691;constitutive=1;rank=2 scaffold_94 ensembl protein_coding_gene 8375 11569 . + . ID=Phyra83692;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000002;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 8375 11569 . + . ID=Phyra83692;Parent=Phyra83692;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 8375 8657 . + 0 ID=Phyra83692;Parent=Phyra83692;rank=1 scaffold_94 . exon 8375 8657 . + . ID=Phyra83692.1;Parent=Phyra83692;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 . CDS 9840 10425 . + 0 ID=Phyra83692;Parent=Phyra83692;rank=2 scaffold_94 . CDS 10500 11445 . + 0 ID=Phyra83692;Parent=Phyra83692;rank=3 scaffold_94 . CDS 11543 11569 . + 0 ID=Phyra83692;Parent=Phyra83692;rank=4 scaffold_94 . exon 9840 10425 . + . ID=Phyra83692.2;Parent=Phyra83692;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_94 . exon 10500 11445 . + . ID=Phyra83692.3;Parent=Phyra83692;constitutive=1;ensembl_phase=2;rank=3 scaffold_94 . exon 11543 11569 . + . ID=Phyra83692.4;Parent=Phyra83692;constitutive=1;rank=4 scaffold_94 . repeat_region 11741 29049 . ? . description=dust scaffold_94 . biological_region 36100 36102 0.999 + . logic_name=eponine scaffold_94 ensembl protein_coding_gene 36156 39534 . + . ID=Phyra83693;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000003;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 36156 39534 . + . ID=Phyra83693;Parent=Phyra83693;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 36156 36227 . + 0 ID=Phyra83693;Parent=Phyra83693;rank=1 scaffold_94 . exon 36156 36227 . + . ID=Phyra83693.1;Parent=Phyra83693;constitutive=1;rank=1 scaffold_94 . CDS 36318 36535 . + 0 ID=Phyra83693;Parent=Phyra83693;rank=2 scaffold_94 . exon 36318 36535 . + . ID=Phyra83693.2;Parent=Phyra83693;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_94 . CDS 36580 37307 . + 0 ID=Phyra83693;Parent=Phyra83693;rank=3 scaffold_94 . exon 36580 37307 . + . ID=Phyra83693.3;Parent=Phyra83693;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_94 . CDS 37375 37958 . + 0 ID=Phyra83693;Parent=Phyra83693;rank=4 scaffold_94 . exon 37375 37958 . + . ID=Phyra83693.4;Parent=Phyra83693;constitutive=1;ensembl_phase=1;rank=4 scaffold_94 . CDS 38563 39534 . + 0 ID=Phyra83693;Parent=Phyra83693;rank=5 scaffold_94 . repeat_region 38109 38506 . ? . description=dust scaffold_94 . repeat_region 40015 44673 . ? . description=dust scaffold_94 . repeat_region 45190 45258 . ? . description=trf scaffold_94 . repeat_region 45743 55072 . ? . description=dust scaffold_94 . exon 38563 39534 . + . ID=Phyra83693.5;Parent=Phyra83693;constitutive=1;rank=5 scaffold_94 . repeat_region 56613 57665 . ? . description=dust scaffold_94 . repeat_region 57679 57811 . ? . description=trf scaffold_94 . repeat_region 58716 58765 . ? . description=dust scaffold_94 . biological_region 59305 59309 0.999 + . logic_name=eponine scaffold_94 . biological_region 60494 60499 0.999 + . logic_name=eponine scaffold_94 . biological_region 60631 60633 0.999 - . logic_name=eponine scaffold_94 . biological_region 61192 61196 0.999 - . logic_name=eponine scaffold_94 . repeat_region 64779 64786 . ? . description=dust scaffold_94 . biological_region 66447 66449 0.999 + . logic_name=eponine scaffold_94 ensembl protein_coding_gene 59464 61059 . + . ID=Phyra83694;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000004;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 59464 61059 . + . ID=Phyra83694;Parent=Phyra83694;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 59464 61059 . + 0 ID=Phyra83694;Parent=Phyra83694;rank=1 scaffold_94 . exon 59464 61059 . + . ID=Phyra83694.1;Parent=Phyra83694;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 66366 68563 . - . ID=Phyra83695;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000005;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 66366 68563 . - . ID=Phyra83695;Parent=Phyra83695;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 66366 66693 . - 0 ID=Phyra83695;Parent=Phyra83695;rank=10 scaffold_94 . exon 66366 66693 . - . ID=Phyra83695.10;Parent=Phyra83695;constitutive=1;ensembl_phase=2;rank=10 scaffold_94 . CDS 66770 66833 . - 0 ID=Phyra83695;Parent=Phyra83695;rank=9 scaffold_94 . CDS 67017 67080 . - 0 ID=Phyra83695;Parent=Phyra83695;rank=8 scaffold_94 . CDS 67166 67213 . - 0 ID=Phyra83695;Parent=Phyra83695;rank=7 scaffold_94 . CDS 67291 67407 . - 0 ID=Phyra83695;Parent=Phyra83695;rank=6 scaffold_94 . CDS 67588 67690 . - 0 ID=Phyra83695;Parent=Phyra83695;rank=5 scaffold_94 . CDS 67821 67957 . - 0 ID=Phyra83695;Parent=Phyra83695;rank=4 scaffold_94 . CDS 68028 68140 . - 0 ID=Phyra83695;Parent=Phyra83695;rank=3 scaffold_94 . CDS 68216 68355 . - 0 ID=Phyra83695;Parent=Phyra83695;rank=2 scaffold_94 . CDS 68448 68563 . - 0 ID=Phyra83695;Parent=Phyra83695;rank=1 scaffold_94 ensembl protein_coding_gene 71675 73492 . - . ID=Phyra72151;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_94000001;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 71675 73492 . - . ID=Phyra72151;Parent=Phyra72151;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 71675 72970 . - 0 ID=Phyra72151;Parent=Phyra72151;rank=2 scaffold_94 . exon 71675 72970 . - . ID=Phyra72151.2;Parent=Phyra72151;constitutive=1;rank=2 scaffold_94 . CDS 73382 73492 . - 0 ID=Phyra72151;Parent=Phyra72151;rank=1 scaffold_94 . exon 73382 73492 . - . ID=Phyra72151.1;Parent=Phyra72151;constitutive=1;rank=1 scaffold_94 . exon 66770 66833 . - . ID=Phyra83695.9;Parent=Phyra83695;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_94 . exon 67017 67080 . - . ID=Phyra83695.8;Parent=Phyra83695;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_94 . exon 67166 67213 . - . ID=Phyra83695.7;Parent=Phyra83695;constitutive=1;rank=7 scaffold_94 . exon 67291 67407 . - . ID=Phyra83695.6;Parent=Phyra83695;constitutive=1;rank=6 scaffold_94 . exon 67588 67690 . - . ID=Phyra83695.5;Parent=Phyra83695;constitutive=1;ensembl_phase=2;rank=5 scaffold_94 . exon 67821 67957 . - . ID=Phyra83695.4;Parent=Phyra83695;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_94 . exon 68028 68140 . - . ID=Phyra83695.3;Parent=Phyra83695;constitutive=1;ensembl_phase=1;rank=3 scaffold_94 . exon 68216 68355 . - . ID=Phyra83695.2;Parent=Phyra83695;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_94 . exon 68448 68563 . - . ID=Phyra83695.1;Parent=Phyra83695;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_94 ensembl protein_coding_gene 69187 70200 . - . ID=Phyra83696;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000006;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 69187 70200 . - . ID=Phyra83696;Parent=Phyra83696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 69187 70200 . - 0 ID=Phyra83696;Parent=Phyra83696;rank=1 scaffold_94 . exon 69187 70200 . - . ID=Phyra83696.1;Parent=Phyra83696;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 74051 76579 . - . ID=Phyra96650;biotype=protein_coding;external_name=C_scaffold_94000002;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 74051 76579 . - . ID=Phyra96650;Parent=Phyra96650;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 74051 74745 . - 0 ID=Phyra96650;Parent=Phyra96650;rank=5 scaffold_94 . exon 74051 74745 . - . ID=Phyra96650.5;Parent=Phyra96650;constitutive=1;ensembl_phase=1;rank=5 scaffold_94 . CDS 74824 74906 . - 0 ID=Phyra96650;Parent=Phyra96650;rank=4 scaffold_94 . exon 74824 74906 . - . ID=Phyra96650.4;Parent=Phyra96650;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_94 . CDS 74943 75354 . - 0 ID=Phyra96650;Parent=Phyra96650;rank=3 scaffold_94 . exon 74943 75354 . - . ID=Phyra96650.3;Parent=Phyra96650;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_94 . CDS 75938 76288 . - 0 ID=Phyra96650;Parent=Phyra96650;rank=2 scaffold_94 . exon 75938 76288 . - . ID=Phyra96650.2;Parent=Phyra96650;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_94 . CDS 76567 76579 . - 0 ID=Phyra96650;Parent=Phyra96650;rank=1 scaffold_94 . repeat_region 77639 77679 . ? . description=trf scaffold_94 . repeat_region 79112 79172 . ? . description=dust scaffold_94 . repeat_region 79116 79163 . ? . description=trf scaffold_94 . repeat_region 83731 83780 . ? . description=dust scaffold_94 ensembl protein_coding_gene 77445 79167 . + . ID=Phyra83699;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000009;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 77445 79167 . + . ID=Phyra83699;Parent=Phyra83699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 77445 77613 . + 0 ID=Phyra83699;Parent=Phyra83699;rank=1 scaffold_94 . exon 77445 77613 . + . ID=Phyra83699.1;Parent=Phyra83699;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 . CDS 77694 78356 . + 0 ID=Phyra83699;Parent=Phyra83699;rank=2 scaffold_94 . exon 77694 78356 . + . ID=Phyra83699.2;Parent=Phyra83699;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_94 . CDS 78421 78905 . + 0 ID=Phyra83699;Parent=Phyra83699;rank=3 scaffold_94 . exon 78421 78905 . + . ID=Phyra83699.3;Parent=Phyra83699;constitutive=1;ensembl_phase=1;rank=3 scaffold_94 . CDS 78967 79167 . + 0 ID=Phyra83699;Parent=Phyra83699;rank=4 scaffold_94 . exon 78967 79167 . + . ID=Phyra83699.4;Parent=Phyra83699;constitutive=1;rank=4 scaffold_94 ensembl protein_coding_gene 79565 80050 . + . ID=Phyra83700;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000010;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 79565 80050 . + . ID=Phyra83700;Parent=Phyra83700;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 79565 80050 . + 0 ID=Phyra83700;Parent=Phyra83700;rank=1 scaffold_94 . exon 79565 80050 . + . ID=Phyra83700.1;Parent=Phyra83700;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 80903 82234 . + . ID=Phyra83701;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000011;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 80903 82234 . + . ID=Phyra83701;Parent=Phyra83701;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 80903 82234 . + 0 ID=Phyra83701;Parent=Phyra83701;rank=1 scaffold_94 . exon 80903 82234 . + . ID=Phyra83701.1;Parent=Phyra83701;constitutive=1;rank=1 scaffold_94 . exon 76567 76579 . - . ID=Phyra96650.1;Parent=Phyra96650;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 . biological_region 92987 92988 0.999 - . logic_name=eponine scaffold_94 . biological_region 93044 93045 0.999 + . logic_name=eponine scaffold_94 ensembl protein_coding_gene 92898 94810 . + . ID=Phyra54722;biotype=protein_coding;external_name=gwEuk.94.13.1;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 92898 94810 . + . ID=Phyra54722;Parent=Phyra54722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 92898 93869 . + 0 ID=Phyra54722;Parent=Phyra54722;rank=1 scaffold_94 . exon 92898 93869 . + . ID=Phyra54722.1;Parent=Phyra54722;constitutive=1;rank=1 scaffold_94 . CDS 93932 94084 . + 0 ID=Phyra54722;Parent=Phyra54722;rank=2 scaffold_94 . exon 93932 94084 . + . ID=Phyra54722.2;Parent=Phyra54722;constitutive=1;rank=2 scaffold_94 . CDS 94154 94810 . + 0 ID=Phyra54722;Parent=Phyra54722;rank=3 scaffold_94 . exon 94154 94810 . + . ID=Phyra54722.3;Parent=Phyra54722;constitutive=1;rank=3 scaffold_94 . repeat_region 101677 101711 . ? . description=trf scaffold_94 . repeat_region 104163 104194 . ? . description=trf scaffold_94 . repeat_region 104396 104436 . ? . description=trf scaffold_94 ensembl protein_coding_gene 97481 98704 . - . ID=Phyra72152;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_94000002;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 97481 98704 . - . ID=Phyra72152;Parent=Phyra72152;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 97481 98704 . - 0 ID=Phyra72152;Parent=Phyra72152;rank=1 scaffold_94 . exon 97481 98704 . - . ID=Phyra72152.1;Parent=Phyra72152;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 100087 101124 . - . ID=Phyra72153;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_94000003;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 100087 101124 . - . ID=Phyra72153;Parent=Phyra72153;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 100087 101124 . - 0 ID=Phyra72153;Parent=Phyra72153;rank=1 scaffold_94 . exon 100087 101124 . - . ID=Phyra72153.1;Parent=Phyra72153;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 102952 104025 . + . ID=Phyra72154;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_94000004;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 102952 104025 . + . ID=Phyra72154;Parent=Phyra72154;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 102952 104025 . + 0 ID=Phyra72154;Parent=Phyra72154;rank=1 scaffold_94 . exon 102952 104025 . + . ID=Phyra72154.1;Parent=Phyra72154;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 98904 99552 . - . ID=Phyra83704;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000014;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 98904 99552 . - . ID=Phyra83704;Parent=Phyra83704;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 98904 99552 . - 0 ID=Phyra83704;Parent=Phyra83704;rank=1 scaffold_94 . exon 98904 99552 . - . ID=Phyra83704.1;Parent=Phyra83704;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 ensembl protein_coding_gene 104138 104656 . - . ID=Phyra83707;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000017;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 104138 104656 . - . ID=Phyra83707;Parent=Phyra83707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 104138 104656 . - 0 ID=Phyra83707;Parent=Phyra83707;rank=1 scaffold_94 . exon 104138 104656 . - . ID=Phyra83707.1;Parent=Phyra83707;constitutive=1;rank=1 scaffold_94 . biological_region 104714 104717 0.999 - . logic_name=eponine scaffold_94 ensembl protein_coding_gene 104906 106578 . + . ID=Phyra83708;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000018;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 104906 106578 . + . ID=Phyra83708;Parent=Phyra83708;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 104906 105136 . + 0 ID=Phyra83708;Parent=Phyra83708;rank=1 scaffold_94 . exon 104906 105136 . + . ID=Phyra83708.1;Parent=Phyra83708;constitutive=1;rank=1 scaffold_94 . CDS 105202 105298 . + 0 ID=Phyra83708;Parent=Phyra83708;rank=2 scaffold_94 . exon 105202 105298 . + . ID=Phyra83708.2;Parent=Phyra83708;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_94 . CDS 105361 105681 . + 0 ID=Phyra83708;Parent=Phyra83708;rank=3 scaffold_94 . exon 105361 105681 . + . ID=Phyra83708.3;Parent=Phyra83708;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_94 . CDS 105758 106578 . + 0 ID=Phyra83708;Parent=Phyra83708;rank=4 scaffold_94 . exon 105758 106578 . + . ID=Phyra83708.4;Parent=Phyra83708;constitutive=1;ensembl_phase=1;rank=4 scaffold_94 ensembl protein_coding_gene 107700 108573 . - . ID=Phyra83709;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000019;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 107700 108573 . - . ID=Phyra83709;Parent=Phyra83709;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 107700 107765 . - 0 ID=Phyra83709;Parent=Phyra83709;rank=4 scaffold_94 . exon 107700 107765 . - . ID=Phyra83709.4;Parent=Phyra83709;constitutive=1;rank=4 scaffold_94 . CDS 107842 107892 . - 0 ID=Phyra83709;Parent=Phyra83709;rank=3 scaffold_94 . exon 107842 107892 . - . ID=Phyra83709.3;Parent=Phyra83709;constitutive=1;rank=3 scaffold_94 . CDS 107955 108359 . - 0 ID=Phyra83709;Parent=Phyra83709;rank=2 scaffold_94 . exon 107955 108359 . - . ID=Phyra83709.2;Parent=Phyra83709;constitutive=1;rank=2 scaffold_94 . CDS 108421 108573 . - 0 ID=Phyra83709;Parent=Phyra83709;rank=1 scaffold_94 . exon 108421 108573 . - . ID=Phyra83709.1;Parent=Phyra83709;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 108769 117390 . - . ID=Phyra83710;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000020;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 108769 117390 . - . ID=Phyra83710;Parent=Phyra83710;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 108769 117390 . - 0 ID=Phyra83710;Parent=Phyra83710;rank=1 scaffold_94 . exon 108769 117390 . - . ID=Phyra83710.1;Parent=Phyra83710;constitutive=1;rank=1 scaffold_94 . repeat_region 120472 121662 . ? . description=dust scaffold_94 ensembl protein_coding_gene 117723 118292 . + . ID=Phyra83711;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000021;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 117723 118292 . + . ID=Phyra83711;Parent=Phyra83711;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 117723 118001 . + 0 ID=Phyra83711;Parent=Phyra83711;rank=1 scaffold_94 . exon 117723 118001 . + . ID=Phyra83711.1;Parent=Phyra83711;constitutive=1;rank=1 scaffold_94 . CDS 118065 118292 . + 0 ID=Phyra83711;Parent=Phyra83711;rank=2 scaffold_94 . exon 118065 118292 . + . ID=Phyra83711.2;Parent=Phyra83711;constitutive=1;rank=2 scaffold_94 ensembl protein_coding_gene 118408 120372 . - . ID=Phyra83712;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000022;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 118408 120372 . - . ID=Phyra83712;Parent=Phyra83712;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 118408 119020 . - 0 ID=Phyra83712;Parent=Phyra83712;rank=4 scaffold_94 . exon 118408 119020 . - . ID=Phyra83712.4;Parent=Phyra83712;constitutive=1;ensembl_phase=2;rank=4 scaffold_94 . CDS 119091 119218 . - 0 ID=Phyra83712;Parent=Phyra83712;rank=3 scaffold_94 . exon 119091 119218 . - . ID=Phyra83712.3;Parent=Phyra83712;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_94 . CDS 119295 119852 . - 0 ID=Phyra83712;Parent=Phyra83712;rank=2 scaffold_94 . exon 119295 119852 . - . ID=Phyra83712.2;Parent=Phyra83712;constitutive=1;rank=2 scaffold_94 . CDS 119884 120372 . - 0 ID=Phyra83712;Parent=Phyra83712;rank=1 scaffold_94 . exon 119884 120372 . - . ID=Phyra83712.1;Parent=Phyra83712;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 122783 124048 . - . ID=Phyra83713;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000023;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 122783 124048 . - . ID=Phyra83713;Parent=Phyra83713;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 122783 124048 . - 0 ID=Phyra83713;Parent=Phyra83713;rank=1 scaffold_94 . exon 122783 124048 . - . ID=Phyra83713.1;Parent=Phyra83713;constitutive=1;rank=1 scaffold_94 . biological_region 123872 123873 0.999 - . logic_name=eponine scaffold_94 . biological_region 126194 126195 0.999 + . logic_name=eponine scaffold_94 . biological_region 126852 126857 0.999 - . logic_name=eponine scaffold_94 . biological_region 126873 126875 0.999 + . logic_name=eponine scaffold_94 . biological_region 126906 126917 0.999 - . logic_name=eponine scaffold_94 . biological_region 126907 126911 0.999 + . logic_name=eponine scaffold_94 . biological_region 126929 126933 0.999 + . logic_name=eponine scaffold_94 . biological_region 126930 126930 0.999 - . logic_name=eponine scaffold_94 . biological_region 126982 126989 0.999 - . logic_name=eponine scaffold_94 . biological_region 126983 126987 0.999 + . logic_name=eponine scaffold_94 . repeat_region 129678 129705 . ? . description=trf scaffold_94 . biological_region 132633 132635 0.999 + . logic_name=eponine scaffold_94 ensembl protein_coding_gene 126018 127283 . + . ID=Phyra72155;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_94000005;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 126018 127283 . + . ID=Phyra72155;Parent=Phyra72155;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 126018 127283 . + 0 ID=Phyra72155;Parent=Phyra72155;rank=1 scaffold_94 . exon 126018 127283 . + . ID=Phyra72155.1;Parent=Phyra72155;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 129164 131072 . + . ID=Phyra83715;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000025;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 129164 131072 . + . ID=Phyra83715;Parent=Phyra83715;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 129164 129611 . + 0 ID=Phyra83715;Parent=Phyra83715;rank=1 scaffold_94 . exon 129164 129611 . + . ID=Phyra83715.1;Parent=Phyra83715;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 . CDS 129773 130540 . + 0 ID=Phyra83715;Parent=Phyra83715;rank=2 scaffold_94 . exon 129773 130540 . + . ID=Phyra83715.2;Parent=Phyra83715;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_94 . CDS 130606 131072 . + 0 ID=Phyra83715;Parent=Phyra83715;rank=3 scaffold_94 . exon 130606 131072 . + . ID=Phyra83715.3;Parent=Phyra83715;constitutive=1;ensembl_phase=1;rank=3 scaffold_94 ensembl protein_coding_gene 131492 134708 . + . ID=Phyra83716;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000026;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 131492 134708 . + . ID=Phyra83716;Parent=Phyra83716;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 131492 133691 . + 0 ID=Phyra83716;Parent=Phyra83716;rank=1 scaffold_94 . exon 131492 133691 . + . ID=Phyra83716.1;Parent=Phyra83716;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 . CDS 134026 134708 . + 0 ID=Phyra83716;Parent=Phyra83716;rank=2 scaffold_94 . exon 134026 134708 . + . ID=Phyra83716.2;Parent=Phyra83716;constitutive=1;ensembl_phase=1;rank=2 scaffold_94 ensembl protein_coding_gene 136737 139377 . + . ID=Phyra83717;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000027;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 136737 139377 . + . ID=Phyra83717;Parent=Phyra83717;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 136737 136854 . + 0 ID=Phyra83717;Parent=Phyra83717;rank=1 scaffold_94 . exon 136737 136854 . + . ID=Phyra83717.1;Parent=Phyra83717;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 . CDS 136937 139377 . + 0 ID=Phyra83717;Parent=Phyra83717;rank=2 scaffold_94 . exon 136937 139377 . + . ID=Phyra83717.2;Parent=Phyra83717;constitutive=1;ensembl_phase=1;rank=2 scaffold_94 ensembl protein_coding_gene 139713 140426 . - . ID=Phyra83718;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000028;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 139713 140426 . - . ID=Phyra83718;Parent=Phyra83718;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 139713 140426 . - 0 ID=Phyra83718;Parent=Phyra83718;rank=1 scaffold_94 . exon 139713 140426 . - . ID=Phyra83718.1;Parent=Phyra83718;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 140577 141822 . + . ID=Phyra83719;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000029;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 140577 141822 . + . ID=Phyra83719;Parent=Phyra83719;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 140577 140645 . + 0 ID=Phyra83719;Parent=Phyra83719;rank=1 scaffold_94 . exon 140577 140645 . + . ID=Phyra83719.1;Parent=Phyra83719;constitutive=1;rank=1 scaffold_94 . CDS 140713 141822 . + 0 ID=Phyra83719;Parent=Phyra83719;rank=2 scaffold_94 . exon 140713 141822 . + . ID=Phyra83719.2;Parent=Phyra83719;constitutive=1;rank=2 scaffold_94 ensembl protein_coding_gene 141898 146312 . - . ID=Phyra83720;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000030;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 141898 146312 . - . ID=Phyra83720;Parent=Phyra83720;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 141898 142359 . - 0 ID=Phyra83720;Parent=Phyra83720;rank=3 scaffold_94 . exon 141898 142359 . - . ID=Phyra83720.3;Parent=Phyra83720;constitutive=1;rank=3 scaffold_94 . CDS 142427 142671 . - 0 ID=Phyra83720;Parent=Phyra83720;rank=2 scaffold_94 . exon 142427 142671 . - . ID=Phyra83720.2;Parent=Phyra83720;constitutive=1;ensembl_phase=1;rank=2 scaffold_94 . CDS 142883 146312 . - 0 ID=Phyra83720;Parent=Phyra83720;rank=1 scaffold_94 . biological_region 144264 144267 0.999 - . logic_name=eponine scaffold_94 . biological_region 146167 146169 0.999 + . logic_name=eponine scaffold_94 . biological_region 146727 146727 0.999 - . logic_name=eponine scaffold_94 . biological_region 148092 148095 0.999 + . logic_name=eponine scaffold_94 . repeat_region 150023 150057 . ? . description=trf scaffold_94 . exon 142883 146312 . - . ID=Phyra83720.1;Parent=Phyra83720;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 ensembl protein_coding_gene 147537 151524 . + . ID=Phyra83721;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000031;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 147537 151524 . + . ID=Phyra83721;Parent=Phyra83721;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 147537 147919 . + 0 ID=Phyra83721;Parent=Phyra83721;rank=1 scaffold_94 . exon 147537 147919 . + . ID=Phyra83721.1;Parent=Phyra83721;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_94 . CDS 147986 148333 . + 0 ID=Phyra83721;Parent=Phyra83721;rank=2 scaffold_94 . exon 147986 148333 . + . ID=Phyra83721.2;Parent=Phyra83721;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_94 . CDS 148397 148689 . + 0 ID=Phyra83721;Parent=Phyra83721;rank=3 scaffold_94 . exon 148397 148689 . + . ID=Phyra83721.3;Parent=Phyra83721;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_94 . CDS 148761 148997 . + 0 ID=Phyra83721;Parent=Phyra83721;rank=4 scaffold_94 . exon 148761 148997 . + . ID=Phyra83721.4;Parent=Phyra83721;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_94 . CDS 149061 149263 . + 0 ID=Phyra83721;Parent=Phyra83721;rank=5 scaffold_94 . exon 149061 149263 . + . ID=Phyra83721.5;Parent=Phyra83721;constitutive=1;ensembl_phase=1;rank=5 scaffold_94 . CDS 149562 149968 . + 0 ID=Phyra83721;Parent=Phyra83721;rank=6 scaffold_94 . exon 149562 149968 . + . ID=Phyra83721.6;Parent=Phyra83721;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_94 . CDS 150060 150204 . + 0 ID=Phyra83721;Parent=Phyra83721;rank=7 scaffold_94 . exon 150060 150204 . + . ID=Phyra83721.7;Parent=Phyra83721;constitutive=1;ensembl_phase=2;rank=7 scaffold_94 . CDS 150251 150408 . + 0 ID=Phyra83721;Parent=Phyra83721;rank=8 scaffold_94 . exon 150251 150408 . + . ID=Phyra83721.8;Parent=Phyra83721;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_94 . CDS 150494 150686 . + 0 ID=Phyra83721;Parent=Phyra83721;rank=9 scaffold_94 . exon 150494 150686 . + . ID=Phyra83721.9;Parent=Phyra83721;constitutive=1;ensembl_phase=2;rank=9 scaffold_94 . CDS 150768 150867 . + 0 ID=Phyra83721;Parent=Phyra83721;rank=10 scaffold_94 . exon 150768 150867 . + . ID=Phyra83721.10;Parent=Phyra83721;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_94 . CDS 150948 151184 . + 0 ID=Phyra83721;Parent=Phyra83721;rank=11 scaffold_94 . exon 150948 151184 . + . ID=Phyra83721.11;Parent=Phyra83721;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_94 . CDS 151289 151524 . + 0 ID=Phyra83721;Parent=Phyra83721;rank=12 scaffold_94 . exon 151289 151524 . + . ID=Phyra83721.12;Parent=Phyra83721;constitutive=1;ensembl_phase=1;rank=12 scaffold_94 ensembl protein_coding_gene 151945 153812 . + . ID=Phyra83722;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000032;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 151945 153812 . + . ID=Phyra83722;Parent=Phyra83722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 151945 152339 . + 0 ID=Phyra83722;Parent=Phyra83722;rank=1 scaffold_94 . exon 151945 152339 . + . ID=Phyra83722.1;Parent=Phyra83722;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_94 . CDS 152416 152763 . + 0 ID=Phyra83722;Parent=Phyra83722;rank=2 scaffold_94 . CDS 152835 153027 . + 0 ID=Phyra83722;Parent=Phyra83722;rank=3 scaffold_94 . CDS 153094 153193 . + 0 ID=Phyra83722;Parent=Phyra83722;rank=4 scaffold_94 . CDS 153259 153495 . + 0 ID=Phyra83722;Parent=Phyra83722;rank=5 scaffold_94 . CDS 153562 153812 . + 0 ID=Phyra83722;Parent=Phyra83722;rank=6 scaffold_94 . exon 152416 152763 . + . ID=Phyra83722.2;Parent=Phyra83722;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_94 . exon 152835 153027 . + . ID=Phyra83722.3;Parent=Phyra83722;constitutive=1;ensembl_phase=2;rank=3 scaffold_94 . exon 153094 153193 . + . ID=Phyra83722.4;Parent=Phyra83722;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_94 . exon 153259 153495 . + . ID=Phyra83722.5;Parent=Phyra83722;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_94 . exon 153562 153812 . + . ID=Phyra83722.6;Parent=Phyra83722;constitutive=1;ensembl_phase=1;rank=6 scaffold_94 ensembl protein_coding_gene 154285 158877 . + . ID=Phyra83723;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000033;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 154285 158877 . + . ID=Phyra83723;Parent=Phyra83723;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 154285 158877 . + 0 ID=Phyra83723;Parent=Phyra83723;rank=1 scaffold_94 . exon 154285 158877 . + . ID=Phyra83723.1;Parent=Phyra83723;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 159046 160399 . - . ID=Phyra83724;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000034;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 159046 160399 . - . ID=Phyra83724;Parent=Phyra83724;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 159046 159927 . - 0 ID=Phyra83724;Parent=Phyra83724;rank=3 scaffold_94 . exon 159046 159927 . - . ID=Phyra83724.3;Parent=Phyra83724;constitutive=1;rank=3 scaffold_94 . CDS 159994 160152 . - 0 ID=Phyra83724;Parent=Phyra83724;rank=2 scaffold_94 . exon 159994 160152 . - . ID=Phyra83724.2;Parent=Phyra83724;constitutive=1;rank=2 scaffold_94 . CDS 160304 160399 . - 0 ID=Phyra83724;Parent=Phyra83724;rank=1 scaffold_94 . exon 160304 160399 . - . ID=Phyra83724.1;Parent=Phyra83724;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 160636 167223 . + . ID=Phyra83725;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000035;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 160636 167223 . + . ID=Phyra83725;Parent=Phyra83725;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 160636 163895 . + 0 ID=Phyra83725;Parent=Phyra83725;rank=1 scaffold_94 . exon 160636 163895 . + . ID=Phyra83725.1;Parent=Phyra83725;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_94 . CDS 164226 164625 . + 0 ID=Phyra83725;Parent=Phyra83725;rank=2 scaffold_94 . CDS 164671 164851 . + 0 ID=Phyra83725;Parent=Phyra83725;rank=3 scaffold_94 . CDS 165015 165171 . + 0 ID=Phyra83725;Parent=Phyra83725;rank=4 scaffold_94 . CDS 165428 165458 . + 0 ID=Phyra83725;Parent=Phyra83725;rank=5 scaffold_94 . CDS 166342 167223 . + 0 ID=Phyra83725;Parent=Phyra83725;rank=6 scaffold_94 . repeat_region 163992 164012 . ? . description=trf scaffold_94 . biological_region 164105 164108 0.999 - . logic_name=eponine scaffold_94 . repeat_region 166211 166339 . ? . description=dust scaffold_94 . biological_region 167121 167122 0.999 + . logic_name=eponine scaffold_94 . biological_region 167247 167251 0.999 + . logic_name=eponine scaffold_94 . biological_region 169094 169097 0.999 + . logic_name=eponine scaffold_94 . biological_region 169886 169886 0.999 + . logic_name=eponine scaffold_94 . exon 164226 164625 . + . ID=Phyra83725.2;Parent=Phyra83725;constitutive=1;ensembl_phase=2;rank=2 scaffold_94 . exon 164671 164851 . + . ID=Phyra83725.3;Parent=Phyra83725;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_94 . exon 165015 165171 . + . ID=Phyra83725.4;Parent=Phyra83725;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_94 . exon 165428 165458 . + . ID=Phyra83725.5;Parent=Phyra83725;constitutive=1;ensembl_phase=2;rank=5 scaffold_94 . exon 166342 167223 . + . ID=Phyra83725.6;Parent=Phyra83725;constitutive=1;rank=6 scaffold_94 ensembl protein_coding_gene 167470 168156 . - . ID=Phyra83726;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000036;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 167470 168156 . - . ID=Phyra83726;Parent=Phyra83726;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 167470 168156 . - 0 ID=Phyra83726;Parent=Phyra83726;rank=1 scaffold_94 . exon 167470 168156 . - . ID=Phyra83726.1;Parent=Phyra83726;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 168342 169477 . + . ID=Phyra83727;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000037;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 168342 169477 . + . ID=Phyra83727;Parent=Phyra83727;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 168342 168446 . + 0 ID=Phyra83727;Parent=Phyra83727;rank=1 scaffold_94 . exon 168342 168446 . + . ID=Phyra83727.1;Parent=Phyra83727;constitutive=1;rank=1 scaffold_94 . CDS 168522 168638 . + 0 ID=Phyra83727;Parent=Phyra83727;rank=2 scaffold_94 . exon 168522 168638 . + . ID=Phyra83727.2;Parent=Phyra83727;constitutive=1;rank=2 scaffold_94 . CDS 168710 169477 . + 0 ID=Phyra83727;Parent=Phyra83727;rank=3 scaffold_94 . exon 168710 169477 . + . ID=Phyra83727.3;Parent=Phyra83727;constitutive=1;rank=3 scaffold_94 ensembl protein_coding_gene 169565 171250 . - . ID=Phyra83728;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000038;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 169565 171250 . - . ID=Phyra83728;Parent=Phyra83728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 169565 169797 . - 0 ID=Phyra83728;Parent=Phyra83728;rank=4 scaffold_94 . exon 169565 169797 . - . ID=Phyra83728.4;Parent=Phyra83728;constitutive=1;ensembl_phase=1;rank=4 scaffold_94 . CDS 169863 170099 . - 0 ID=Phyra83728;Parent=Phyra83728;rank=3 scaffold_94 . exon 169863 170099 . - . ID=Phyra83728.3;Parent=Phyra83728;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_94 . CDS 170167 170266 . - 0 ID=Phyra83728;Parent=Phyra83728;rank=2 scaffold_94 . exon 170167 170266 . - . ID=Phyra83728.2;Parent=Phyra83728;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_94 . CDS 170336 171250 . - 0 ID=Phyra83728;Parent=Phyra83728;rank=1 scaffold_94 . exon 170336 171250 . - . ID=Phyra83728.1;Parent=Phyra83728;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 171502 173067 . - . ID=Phyra83729;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000039;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 171502 173067 . - . ID=Phyra83729;Parent=Phyra83729;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 171502 173067 . - 0 ID=Phyra83729;Parent=Phyra83729;rank=1 scaffold_94 . exon 171502 173067 . - . ID=Phyra83729.1;Parent=Phyra83729;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 174535 176418 . - . ID=Phyra83730;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000040;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 174535 176418 . - . ID=Phyra83730;Parent=Phyra83730;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 174535 176418 . - 0 ID=Phyra83730;Parent=Phyra83730;rank=1 scaffold_94 . exon 174535 176418 . - . ID=Phyra83730.1;Parent=Phyra83730;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 178315 180168 . + . ID=Phyra83731;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_94000041;logic_name=jgi_phyra1 scaffold_94 ensembl transcript 178315 180168 . + . ID=Phyra83731;Parent=Phyra83731;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_94 . CDS 178315 180168 . + 0 ID=Phyra83731;Parent=Phyra83731;rank=1 scaffold_94 . exon 178315 180168 . + . ID=Phyra83731.1;Parent=Phyra83731;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_93 1 186886 scaffold_93 . repeat_region 1 1141 . - . description=Gypsy-2-I_PI-int scaffold_93 . repeat_region 1142 33260 . ? . description=dust scaffold_93 . repeat_region 1142 33260 . ? . description=dust scaffold_93 ensembl protein_coding_gene 33512 34350 . - . ID=Phyra83646;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000001;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 33512 34350 . - . ID=Phyra83646;Parent=Phyra83646;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 33512 33557 . - 0 ID=Phyra83646;Parent=Phyra83646;rank=2 scaffold_93 . exon 33512 33557 . - . ID=Phyra83646.2;Parent=Phyra83646;constitutive=1;ensembl_phase=2;rank=2 scaffold_93 . CDS 33584 34350 . - 0 ID=Phyra83646;Parent=Phyra83646;rank=1 scaffold_93 . exon 33584 34350 . - . ID=Phyra83646.1;Parent=Phyra83646;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_93 ensembl protein_coding_gene 36711 37416 . - . ID=Phyra83647;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000002;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 36711 37416 . - . ID=Phyra83647;Parent=Phyra83647;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 36711 36713 . - 0 ID=Phyra83647;Parent=Phyra83647;rank=3 scaffold_93 . exon 36711 36713 . - . ID=Phyra83647.3;Parent=Phyra83647;constitutive=1;rank=3 scaffold_93 . CDS 36735 36894 . - 0 ID=Phyra83647;Parent=Phyra83647;rank=2 scaffold_93 . exon 36735 36894 . - . ID=Phyra83647.2;Parent=Phyra83647;constitutive=1;ensembl_phase=2;rank=2 scaffold_93 . CDS 36989 37416 . - 0 ID=Phyra83647;Parent=Phyra83647;rank=1 scaffold_93 . exon 36989 37416 . - . ID=Phyra83647.1;Parent=Phyra83647;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_93 . repeat_region 37886 39534 . ? . description=dust scaffold_93 . biological_region 41417 41418 0.999 - . logic_name=eponine scaffold_93 . repeat_region 42756 55118 . ? . description=dust scaffold_93 ensembl protein_coding_gene 40672 41571 . + . ID=Phyra72143;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_93000001;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 40672 41571 . + . ID=Phyra72143;Parent=Phyra72143;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 40672 41571 . + 0 ID=Phyra72143;Parent=Phyra72143;rank=1 scaffold_93 . exon 40672 41571 . + . ID=Phyra72143.1;Parent=Phyra72143;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 39880 40528 . + . ID=Phyra83648;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000003;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 39880 40528 . + . ID=Phyra83648;Parent=Phyra83648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 39880 40528 . + 0 ID=Phyra83648;Parent=Phyra83648;rank=1 scaffold_93 . exon 39880 40528 . + . ID=Phyra83648.1;Parent=Phyra83648;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 ensembl protein_coding_gene 57856 61239 . + . ID=Phyra72144;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_93000002;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 57856 61239 . + . ID=Phyra72144;Parent=Phyra72144;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 57856 61239 . + 0 ID=Phyra72144;Parent=Phyra72144;rank=1 scaffold_93 . exon 57856 61239 . + . ID=Phyra72144.1;Parent=Phyra72144;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 55625 57001 . + . ID=Phyra83650;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000005;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 55625 57001 . + . ID=Phyra83650;Parent=Phyra83650;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 55625 56517 . + 0 ID=Phyra83650;Parent=Phyra83650;rank=1 scaffold_93 . exon 55625 56517 . + . ID=Phyra83650.1;Parent=Phyra83650;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_93 . CDS 56947 57001 . + 0 ID=Phyra83650;Parent=Phyra83650;rank=2 scaffold_93 . exon 56947 57001 . + . ID=Phyra83650.2;Parent=Phyra83650;constitutive=1;ensembl_phase=2;rank=2 scaffold_93 ensembl protein_coding_gene 57337 57740 . + . ID=Phyra83651;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000006;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 57337 57740 . + . ID=Phyra83651;Parent=Phyra83651;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 57337 57740 . + 0 ID=Phyra83651;Parent=Phyra83651;rank=1 scaffold_93 . exon 57337 57740 . + . ID=Phyra83651.1;Parent=Phyra83651;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_93 . biological_region 62417 62422 0.999 - . logic_name=eponine scaffold_93 . biological_region 62447 62452 0.999 + . logic_name=eponine scaffold_93 . biological_region 62470 62473 0.999 - . logic_name=eponine scaffold_93 . biological_region 62704 62707 0.999 - . logic_name=eponine scaffold_93 . repeat_region 63701 63710 . ? . description=dust scaffold_93 . biological_region 67598 67600 0.999 + . logic_name=eponine scaffold_93 . repeat_region 68858 68907 . ? . description=dust scaffold_93 ensembl protein_coding_gene 62224 63217 . + . ID=Phyra83653;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000008;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 62224 63217 . + . ID=Phyra83653;Parent=Phyra83653;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 62224 63129 . + 0 ID=Phyra83653;Parent=Phyra83653;rank=1 scaffold_93 . exon 62224 63129 . + . ID=Phyra83653.1;Parent=Phyra83653;constitutive=1;rank=1 scaffold_93 . CDS 63203 63217 . + 0 ID=Phyra83653;Parent=Phyra83653;rank=2 scaffold_93 . exon 63203 63217 . + . ID=Phyra83653.2;Parent=Phyra83653;constitutive=1;rank=2 scaffold_93 ensembl protein_coding_gene 65870 67668 . - . ID=Phyra83654;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000009;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 65870 67668 . - . ID=Phyra83654;Parent=Phyra83654;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 65870 66554 . - 0 ID=Phyra83654;Parent=Phyra83654;rank=3 scaffold_93 . exon 65870 66554 . - . ID=Phyra83654.3;Parent=Phyra83654;constitutive=1;ensembl_phase=2;rank=3 scaffold_93 . CDS 66625 67060 . - 0 ID=Phyra83654;Parent=Phyra83654;rank=2 scaffold_93 . exon 66625 67060 . - . ID=Phyra83654.2;Parent=Phyra83654;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_93 . CDS 67128 67668 . - 0 ID=Phyra83654;Parent=Phyra83654;rank=1 scaffold_93 . exon 67128 67668 . - . ID=Phyra83654.1;Parent=Phyra83654;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 ensembl protein_coding_gene 68052 69016 . + . ID=Phyra83655;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000010;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 68052 69016 . + . ID=Phyra83655;Parent=Phyra83655;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 68052 68805 . + 0 ID=Phyra83655;Parent=Phyra83655;rank=1 scaffold_93 . exon 68052 68805 . + . ID=Phyra83655.1;Parent=Phyra83655;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 . CDS 68994 69016 . + 0 ID=Phyra83655;Parent=Phyra83655;rank=2 scaffold_93 . repeat_region 73177 73214 . ? . description=trf scaffold_93 . exon 68994 69016 . + . ID=Phyra83655.2;Parent=Phyra83655;constitutive=1;ensembl_phase=1;rank=2 scaffold_93 ensembl protein_coding_gene 70633 71510 . - . ID=Phyra83656;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000011;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 70633 71510 . - . ID=Phyra83656;Parent=Phyra83656;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 70633 70805 . - 0 ID=Phyra83656;Parent=Phyra83656;rank=2 scaffold_93 . exon 70633 70805 . - . ID=Phyra83656.2;Parent=Phyra83656;constitutive=1;ensembl_phase=1;rank=2 scaffold_93 . CDS 70886 71510 . - 0 ID=Phyra83656;Parent=Phyra83656;rank=1 scaffold_93 . exon 70886 71510 . - . ID=Phyra83656.1;Parent=Phyra83656;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 ensembl protein_coding_gene 71815 72582 . - . ID=Phyra83657;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000012;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 71815 72582 . - . ID=Phyra83657;Parent=Phyra83657;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 71815 72582 . - 0 ID=Phyra83657;Parent=Phyra83657;rank=1 scaffold_93 . exon 71815 72582 . - . ID=Phyra83657.1;Parent=Phyra83657;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 73254 74190 . + . ID=Phyra83658;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000013;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 73254 74190 . + . ID=Phyra83658;Parent=Phyra83658;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 73254 73415 . + 0 ID=Phyra83658;Parent=Phyra83658;rank=1 scaffold_93 . exon 73254 73415 . + . ID=Phyra83658.1;Parent=Phyra83658;constitutive=1;rank=1 scaffold_93 . CDS 73478 74129 . + 0 ID=Phyra83658;Parent=Phyra83658;rank=2 scaffold_93 . exon 73478 74129 . + . ID=Phyra83658.2;Parent=Phyra83658;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_93 . CDS 74180 74190 . + 0 ID=Phyra83658;Parent=Phyra83658;rank=3 scaffold_93 . exon 74180 74190 . + . ID=Phyra83658.3;Parent=Phyra83658;constitutive=1;ensembl_phase=1;rank=3 scaffold_93 ensembl protein_coding_gene 74466 77741 . - . ID=Phyra83659;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000014;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 74466 77741 . - . ID=Phyra83659;Parent=Phyra83659;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 74466 77741 . - 0 ID=Phyra83659;Parent=Phyra83659;rank=1 scaffold_93 . exon 74466 77741 . - . ID=Phyra83659.1;Parent=Phyra83659;constitutive=1;rank=1 scaffold_93 . repeat_region 77921 84904 . ? . description=dust scaffold_93 . repeat_region 85193 85202 . ? . description=dust scaffold_93 . biological_region 85686 85688 0.999 + . logic_name=eponine scaffold_93 ensembl protein_coding_gene 85722 89123 . - . ID=Phyra83660;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000015;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 85722 89123 . - . ID=Phyra83660;Parent=Phyra83660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 85722 89123 . - 0 ID=Phyra83660;Parent=Phyra83660;rank=1 scaffold_93 . exon 85722 89123 . - . ID=Phyra83660.1;Parent=Phyra83660;constitutive=1;rank=1 scaffold_93 . repeat_region 94544 94563 . ? . description=trf scaffold_93 . repeat_region 97667 97709 . ? . description=trf scaffold_93 . repeat_region 97671 97709 . ? . description=trf scaffold_93 ensembl protein_coding_gene 89979 92049 . + . ID=Phyra83661;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000016;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 89979 92049 . + . ID=Phyra83661;Parent=Phyra83661;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 89979 90282 . + 0 ID=Phyra83661;Parent=Phyra83661;rank=1 scaffold_93 . exon 89979 90282 . + . ID=Phyra83661.1;Parent=Phyra83661;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 . CDS 90359 92049 . + 0 ID=Phyra83661;Parent=Phyra83661;rank=2 scaffold_93 . exon 90359 92049 . + . ID=Phyra83661.2;Parent=Phyra83661;constitutive=1;ensembl_phase=1;rank=2 scaffold_93 ensembl protein_coding_gene 92461 93831 . - . ID=Phyra83662;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000017;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 92461 93831 . - . ID=Phyra83662;Parent=Phyra83662;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 92461 93831 . - 0 ID=Phyra83662;Parent=Phyra83662;rank=1 scaffold_93 . exon 92461 93831 . - . ID=Phyra83662.1;Parent=Phyra83662;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 95120 96748 . - . ID=Phyra83663;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000018;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 95120 96748 . - . ID=Phyra83663;Parent=Phyra83663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 95120 96183 . - 0 ID=Phyra83663;Parent=Phyra83663;rank=2 scaffold_93 . exon 95120 96183 . - . ID=Phyra83663.2;Parent=Phyra83663;constitutive=1;ensembl_phase=1;rank=2 scaffold_93 . CDS 96274 96748 . - 0 ID=Phyra83663;Parent=Phyra83663;rank=1 scaffold_93 . exon 96274 96748 . - . ID=Phyra83663.1;Parent=Phyra83663;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 ensembl protein_coding_gene 97761 100325 . + . ID=Phyra83664;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000019;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 97761 100325 . + . ID=Phyra83664;Parent=Phyra83664;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 97761 98948 . + 0 ID=Phyra83664;Parent=Phyra83664;rank=1 scaffold_93 . exon 97761 98948 . + . ID=Phyra83664.1;Parent=Phyra83664;constitutive=1;rank=1 scaffold_93 . CDS 98998 99176 . + 0 ID=Phyra83664;Parent=Phyra83664;rank=2 scaffold_93 . CDS 99443 100030 . + 0 ID=Phyra83664;Parent=Phyra83664;rank=3 scaffold_93 . CDS 100100 100325 . + 0 ID=Phyra83664;Parent=Phyra83664;rank=4 scaffold_93 ensembl protein_coding_gene 100522 100791 . + . ID=Phyra72145;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_93000003;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 100522 100791 . + . ID=Phyra72145;Parent=Phyra72145;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 100522 100791 . + 0 ID=Phyra72145;Parent=Phyra72145;rank=1 scaffold_93 . exon 100522 100791 . + . ID=Phyra72145.1;Parent=Phyra72145;constitutive=1;rank=1 scaffold_93 . exon 98998 99176 . + . ID=Phyra83664.2;Parent=Phyra83664;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_93 . exon 99443 100030 . + . ID=Phyra83664.3;Parent=Phyra83664;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_93 . exon 100100 100325 . + . ID=Phyra83664.4;Parent=Phyra83664;constitutive=1;ensembl_phase=2;rank=4 scaffold_93 ensembl protein_coding_gene 100949 101854 . - . ID=Phyra83666;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000021;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 100949 101854 . - . ID=Phyra83666;Parent=Phyra83666;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 100949 101854 . - 0 ID=Phyra83666;Parent=Phyra83666;rank=1 scaffold_93 . exon 100949 101854 . - . ID=Phyra83666.1;Parent=Phyra83666;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 102091 102608 . + . ID=Phyra83667;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000022;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 102091 102608 . + . ID=Phyra83667;Parent=Phyra83667;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 102091 102104 . + 0 ID=Phyra83667;Parent=Phyra83667;rank=1 scaffold_93 . exon 102091 102104 . + . ID=Phyra83667.1;Parent=Phyra83667;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_93 . CDS 102251 102608 . + 0 ID=Phyra83667;Parent=Phyra83667;rank=2 scaffold_93 . exon 102251 102608 . + . ID=Phyra83667.2;Parent=Phyra83667;constitutive=1;ensembl_phase=2;rank=2 scaffold_93 ensembl protein_coding_gene 102840 104276 . - . ID=Phyra83668;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000023;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 102840 104276 . - . ID=Phyra83668;Parent=Phyra83668;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 102840 104276 . - 0 ID=Phyra83668;Parent=Phyra83668;rank=1 scaffold_93 . exon 102840 104276 . - . ID=Phyra83668.1;Parent=Phyra83668;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 107751 108548 . - . ID=Phyra83669;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000024;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 107751 108548 . - . ID=Phyra83669;Parent=Phyra83669;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 107751 108344 . - 0 ID=Phyra83669;Parent=Phyra83669;rank=2 scaffold_93 . exon 107751 108344 . - . ID=Phyra83669.2;Parent=Phyra83669;constitutive=1;rank=2 scaffold_93 . CDS 108423 108548 . - 0 ID=Phyra83669;Parent=Phyra83669;rank=1 scaffold_93 . biological_region 117185 117187 0.999 + . logic_name=eponine scaffold_93 ensembl protein_coding_gene 115991 116305 . - . ID=Phyra72146;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_93000004;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 115991 116305 . - . ID=Phyra72146;Parent=Phyra72146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 115991 116305 . - 0 ID=Phyra72146;Parent=Phyra72146;rank=1 scaffold_93 . exon 115991 116305 . - . ID=Phyra72146.1;Parent=Phyra72146;constitutive=1;rank=1 scaffold_93 . exon 108423 108548 . - . ID=Phyra83669.1;Parent=Phyra83669;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 109994 113264 . - . ID=Phyra83670;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000025;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 109994 113264 . - . ID=Phyra83670;Parent=Phyra83670;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 109994 110739 . - 0 ID=Phyra83670;Parent=Phyra83670;rank=6 scaffold_93 . exon 109994 110739 . - . ID=Phyra83670.6;Parent=Phyra83670;constitutive=1;ensembl_phase=1;rank=6 scaffold_93 . CDS 110774 111236 . - 0 ID=Phyra83670;Parent=Phyra83670;rank=5 scaffold_93 . exon 110774 111236 . - . ID=Phyra83670.5;Parent=Phyra83670;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_93 . CDS 111302 111527 . - 0 ID=Phyra83670;Parent=Phyra83670;rank=4 scaffold_93 . exon 111302 111527 . - . ID=Phyra83670.4;Parent=Phyra83670;constitutive=1;ensembl_phase=2;rank=4 scaffold_93 . CDS 111728 112457 . - 0 ID=Phyra83670;Parent=Phyra83670;rank=3 scaffold_93 . exon 111728 112457 . - . ID=Phyra83670.3;Parent=Phyra83670;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_93 . CDS 112659 112713 . - 0 ID=Phyra83670;Parent=Phyra83670;rank=2 scaffold_93 . exon 112659 112713 . - . ID=Phyra83670.2;Parent=Phyra83670;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_93 . CDS 112758 113264 . - 0 ID=Phyra83670;Parent=Phyra83670;rank=1 scaffold_93 . exon 112758 113264 . - . ID=Phyra83670.1;Parent=Phyra83670;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 117352 119168 . + . ID=Phyra83672;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000027;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 117352 119168 . + . ID=Phyra83672;Parent=Phyra83672;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 117352 118785 . + 0 ID=Phyra83672;Parent=Phyra83672;rank=1 scaffold_93 . exon 117352 118785 . + . ID=Phyra83672.1;Parent=Phyra83672;constitutive=1;rank=1 scaffold_93 . CDS 118848 119168 . + 0 ID=Phyra83672;Parent=Phyra83672;rank=2 scaffold_93 ensembl protein_coding_gene 127746 128417 . - . ID=Phyra54683;biotype=protein_coding;external_name=gwEuk.93.42.1;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 127746 128417 . - . ID=Phyra54683;Parent=Phyra54683;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 127746 128417 . - 0 ID=Phyra54683;Parent=Phyra54683;rank=1 scaffold_93 . exon 127746 128417 . - . ID=Phyra54683.1;Parent=Phyra54683;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 124789 125511 . - . ID=Phyra72147;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_93000005;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 124789 125511 . - . ID=Phyra72147;Parent=Phyra72147;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 124789 125511 . - 0 ID=Phyra72147;Parent=Phyra72147;rank=1 scaffold_93 . exon 124789 125511 . - . ID=Phyra72147.1;Parent=Phyra72147;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 126455 127551 . + . ID=Phyra72148;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_93000006;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 126455 127551 . + . ID=Phyra72148;Parent=Phyra72148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 126455 127462 . + 0 ID=Phyra72148;Parent=Phyra72148;rank=1 scaffold_93 . exon 126455 127462 . + . ID=Phyra72148.1;Parent=Phyra72148;constitutive=1;rank=1 scaffold_93 . CDS 127489 127551 . + 0 ID=Phyra72148;Parent=Phyra72148;rank=2 scaffold_93 . exon 127489 127551 . + . ID=Phyra72148.2;Parent=Phyra72148;constitutive=1;rank=2 scaffold_93 . exon 118848 119168 . + . ID=Phyra83672.2;Parent=Phyra83672;constitutive=1;rank=2 scaffold_93 ensembl protein_coding_gene 119487 120614 . - . ID=Phyra83673;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000028;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 119487 120614 . - . ID=Phyra83673;Parent=Phyra83673;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 119487 120614 . - 0 ID=Phyra83673;Parent=Phyra83673;rank=1 scaffold_93 . exon 119487 120614 . - . ID=Phyra83673.1;Parent=Phyra83673;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 121605 123254 . + . ID=Phyra83674;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000029;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 121605 123254 . + . ID=Phyra83674;Parent=Phyra83674;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 121605 123254 . + 0 ID=Phyra83674;Parent=Phyra83674;rank=1 scaffold_93 . exon 121605 123254 . + . ID=Phyra83674.1;Parent=Phyra83674;constitutive=1;rank=1 scaffold_93 . repeat_region 128419 128475 . ? . description=dust scaffold_93 . repeat_region 133031 133038 . ? . description=dust scaffold_93 . repeat_region 136210 136230 . ? . description=trf scaffold_93 ensembl protein_coding_gene 135026 135961 . + . ID=Phyra83678;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000033;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 135026 135961 . + . ID=Phyra83678;Parent=Phyra83678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 135026 135961 . + 0 ID=Phyra83678;Parent=Phyra83678;rank=1 scaffold_93 . exon 135026 135961 . + . ID=Phyra83678.1;Parent=Phyra83678;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 136173 137787 . + . ID=Phyra83679;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000034;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 136173 137787 . + . ID=Phyra83679;Parent=Phyra83679;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 136173 137710 . + 0 ID=Phyra83679;Parent=Phyra83679;rank=1 scaffold_93 . exon 136173 137710 . + . ID=Phyra83679.1;Parent=Phyra83679;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_93 . CDS 137778 137787 . + 0 ID=Phyra83679;Parent=Phyra83679;rank=2 scaffold_93 . biological_region 140134 140139 0.999 + . logic_name=eponine scaffold_93 . biological_region 143068 143072 0.999 - . logic_name=eponine scaffold_93 . exon 137778 137787 . + . ID=Phyra83679.2;Parent=Phyra83679;constitutive=1;ensembl_phase=2;rank=2 scaffold_93 ensembl protein_coding_gene 139588 141255 . - . ID=Phyra83680;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000035;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 139588 141255 . - . ID=Phyra83680;Parent=Phyra83680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 139588 141255 . - 0 ID=Phyra83680;Parent=Phyra83680;rank=1 scaffold_93 . exon 139588 141255 . - . ID=Phyra83680.1;Parent=Phyra83680;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 144065 144868 . - . ID=Phyra83681;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000036;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 144065 144868 . - . ID=Phyra83681;Parent=Phyra83681;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 144065 144162 . - 0 ID=Phyra83681;Parent=Phyra83681;rank=5 scaffold_93 . exon 144065 144162 . - . ID=Phyra83681.5;Parent=Phyra83681;constitutive=1;ensembl_phase=1;rank=5 scaffold_93 . CDS 144240 144336 . - 0 ID=Phyra83681;Parent=Phyra83681;rank=4 scaffold_93 . exon 144240 144336 . - . ID=Phyra83681.4;Parent=Phyra83681;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_93 . CDS 144396 144518 . - 0 ID=Phyra83681;Parent=Phyra83681;rank=3 scaffold_93 . exon 144396 144518 . - . ID=Phyra83681.3;Parent=Phyra83681;constitutive=1;rank=3 scaffold_93 . CDS 144595 144670 . - 0 ID=Phyra83681;Parent=Phyra83681;rank=2 scaffold_93 . exon 144595 144670 . - . ID=Phyra83681.2;Parent=Phyra83681;constitutive=1;ensembl_phase=2;rank=2 scaffold_93 . CDS 144744 144868 . - 0 ID=Phyra83681;Parent=Phyra83681;rank=1 scaffold_93 . exon 144744 144868 . - . ID=Phyra83681.1;Parent=Phyra83681;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_93 ensembl protein_coding_gene 145045 145590 . - . ID=Phyra83682;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000037;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 145045 145590 . - . ID=Phyra83682;Parent=Phyra83682;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 145045 145590 . - 0 ID=Phyra83682;Parent=Phyra83682;rank=1 scaffold_93 . exon 145045 145590 . - . ID=Phyra83682.1;Parent=Phyra83682;constitutive=1;rank=1 scaffold_93 . repeat_region 148114 148130 . ? . description=dust scaffold_93 . repeat_region 154231 154357 . + . description=(CTG)n scaffold_93 . repeat_region 154258 154351 . ? . description=dust scaffold_93 . repeat_region 154571 154623 . ? . description=trf scaffold_93 . repeat_region 155597 155740 . + . description=(CTG)n scaffold_93 . repeat_region 155636 155698 . ? . description=dust scaffold_93 . repeat_region 155636 155704 . ? . description=trf scaffold_93 . repeat_region 155637 155704 . ? . description=trf scaffold_93 . repeat_region 155918 155925 . ? . description=dust scaffold_93 ensembl protein_coding_gene 148163 149689 . + . ID=Phyra83683;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000038;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 148163 149689 . + . ID=Phyra83683;Parent=Phyra83683;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 148163 149689 . + 0 ID=Phyra83683;Parent=Phyra83683;rank=1 scaffold_93 . exon 148163 149689 . + . ID=Phyra83683.1;Parent=Phyra83683;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 149775 150624 . - . ID=Phyra83684;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000039;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 149775 150624 . - . ID=Phyra83684;Parent=Phyra83684;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 149775 149796 . - 0 ID=Phyra83684;Parent=Phyra83684;rank=2 scaffold_93 . exon 149775 149796 . - . ID=Phyra83684.2;Parent=Phyra83684;constitutive=1;ensembl_phase=2;rank=2 scaffold_93 . CDS 149837 150624 . - 0 ID=Phyra83684;Parent=Phyra83684;rank=1 scaffold_93 . exon 149837 150624 . - . ID=Phyra83684.1;Parent=Phyra83684;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_93 ensembl protein_coding_gene 151090 151818 . - . ID=Phyra83685;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000040;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 151090 151818 . - . ID=Phyra83685;Parent=Phyra83685;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 151090 151818 . - 0 ID=Phyra83685;Parent=Phyra83685;rank=1 scaffold_93 . exon 151090 151818 . - . ID=Phyra83685.1;Parent=Phyra83685;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 152977 155820 . - . ID=Phyra83686;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000041;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 152977 155820 . - . ID=Phyra83686;Parent=Phyra83686;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 152977 153536 . - 0 ID=Phyra83686;Parent=Phyra83686;rank=2 scaffold_93 . exon 152977 153536 . - . ID=Phyra83686.2;Parent=Phyra83686;constitutive=1;ensembl_phase=1;rank=2 scaffold_93 . CDS 154023 155820 . - 0 ID=Phyra83686;Parent=Phyra83686;rank=1 scaffold_93 . exon 154023 155820 . - . ID=Phyra83686.1;Parent=Phyra83686;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 . biological_region 157665 157668 0.999 - . logic_name=eponine scaffold_93 . biological_region 158049 158049 0.999 - . logic_name=eponine scaffold_93 . biological_region 164103 164107 0.999 + . logic_name=eponine scaffold_93 . biological_region 164147 164149 0.999 - . logic_name=eponine scaffold_93 . biological_region 166223 166223 0.999 - . logic_name=eponine scaffold_93 . biological_region 166829 166833 0.999 + . logic_name=eponine scaffold_93 ensembl protein_coding_gene 163619 164527 . + . ID=Phyra54694;biotype=protein_coding;external_name=gwEuk.93.53.1;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 163619 164527 . + . ID=Phyra54694;Parent=Phyra54694;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 163619 164527 . + 0 ID=Phyra54694;Parent=Phyra54694;rank=1 scaffold_93 . exon 163619 164527 . + . ID=Phyra54694.1;Parent=Phyra54694;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 165715 167095 . - . ID=Phyra72150;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_93000008;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 165715 167095 . - . ID=Phyra72150;Parent=Phyra72150;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 165715 166927 . - 0 ID=Phyra72150;Parent=Phyra72150;rank=2 scaffold_93 . exon 165715 166927 . - . ID=Phyra72150.2;Parent=Phyra72150;constitutive=1;ensembl_phase=2;rank=2 scaffold_93 . CDS 167052 167095 . - 0 ID=Phyra72150;Parent=Phyra72150;rank=1 scaffold_93 . exon 167052 167095 . - . ID=Phyra72150.1;Parent=Phyra72150;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_93 ensembl protein_coding_gene 159508 160005 . - . ID=Phyra83687;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000042;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 159508 160005 . - . ID=Phyra83687;Parent=Phyra83687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 159508 160005 . - 0 ID=Phyra83687;Parent=Phyra83687;rank=1 scaffold_93 . exon 159508 160005 . - . ID=Phyra83687.1;Parent=Phyra83687;constitutive=1;rank=1 scaffold_93 . repeat_region 167980 167987 . ? . description=dust scaffold_93 . repeat_region 173249 173456 . - . description=GypsyPi-1c_LTR scaffold_93 . repeat_region 173680 173687 . ? . description=dust scaffold_93 . repeat_region 175540 175589 . ? . description=dust scaffold_93 ensembl protein_coding_gene 176538 177008 . + . ID=Phyra83690;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_93000045;logic_name=jgi_phyra1 scaffold_93 ensembl transcript 176538 177008 . + . ID=Phyra83690;Parent=Phyra83690;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_93 . CDS 176538 176920 . + 0 ID=Phyra83690;Parent=Phyra83690;rank=1 scaffold_93 . exon 176538 176920 . + . ID=Phyra83690.1;Parent=Phyra83690;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_93 . CDS 176981 177008 . + 0 ID=Phyra83690;Parent=Phyra83690;rank=2 scaffold_93 . exon 176981 177008 . + . ID=Phyra83690.2;Parent=Phyra83690;constitutive=1;ensembl_phase=2;rank=2 scaffold_93 . biological_region 179518 179520 0.999 + . logic_name=eponine scaffold_93 . biological_region 186500 186500 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_92 1 188640 scaffold_92 . repeat_region 2043 2050 . ? . description=dust scaffold_92 . biological_region 2807 2808 0.999 + . logic_name=eponine scaffold_92 . repeat_region 3987 4729 . ? . description=dust scaffold_92 . repeat_region 6378 8209 . ? . description=dust scaffold_92 ensembl protein_coding_gene 236 1187 . - . ID=Phyra83595;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000001;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 236 1187 . - . ID=Phyra83595;Parent=Phyra83595;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 236 1048 . - 0 ID=Phyra83595;Parent=Phyra83595;rank=2 scaffold_92 . exon 236 1048 . - . ID=Phyra83595.2;Parent=Phyra83595;constitutive=1;rank=2 scaffold_92 . CDS 1131 1187 . - 0 ID=Phyra83595;Parent=Phyra83595;rank=1 scaffold_92 . exon 1131 1187 . - . ID=Phyra83595.1;Parent=Phyra83595;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 2083 2679 . - . ID=Phyra83596;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000002;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 2083 2679 . - . ID=Phyra83596;Parent=Phyra83596;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 2083 2679 . - 0 ID=Phyra83596;Parent=Phyra83596;rank=1 scaffold_92 . exon 2083 2679 . - . ID=Phyra83596.1;Parent=Phyra83596;constitutive=1;rank=1 scaffold_92 . repeat_region 14834 15142 . + . description=GypsyPi-1c_LTR scaffold_92 . repeat_region 15162 15467 . + . description=GypsyPi-1c_LTR scaffold_92 . repeat_region 21804 21829 . ? . description=dust scaffold_92 . biological_region 23383 23388 0.999 + . logic_name=eponine scaffold_92 . biological_region 23419 23422 0.999 + . logic_name=eponine scaffold_92 . biological_region 23476 23480 0.999 + . logic_name=eponine scaffold_92 . biological_region 23529 23531 0.999 - . logic_name=eponine scaffold_92 . biological_region 23822 23823 0.999 - . logic_name=eponine scaffold_92 . biological_region 24024 24025 0.999 - . logic_name=eponine scaffold_92 . biological_region 25280 25284 0.999 - . logic_name=eponine scaffold_92 . repeat_region 27251 27300 . ? . description=dust scaffold_92 . repeat_region 28481 30282 . ? . description=dust scaffold_92 ensembl protein_coding_gene 21647 24058 . + . ID=Phyra83597;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000003;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 21647 24058 . + . ID=Phyra83597;Parent=Phyra83597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 21647 24058 . + 0 ID=Phyra83597;Parent=Phyra83597;rank=1 scaffold_92 . exon 21647 24058 . + . ID=Phyra83597.1;Parent=Phyra83597;constitutive=1;rank=1 scaffold_92 . repeat_region 36365 36481 . - . description=GypsyPi-1c_I-int scaffold_92 ensembl protein_coding_gene 31549 32203 . + . ID=Phyra83598;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000004;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 31549 32203 . + . ID=Phyra83598;Parent=Phyra83598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 31549 32132 . + 0 ID=Phyra83598;Parent=Phyra83598;rank=1 scaffold_92 . exon 31549 32132 . + . ID=Phyra83598.1;Parent=Phyra83598;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 . CDS 32182 32203 . + 0 ID=Phyra83598;Parent=Phyra83598;rank=2 scaffold_92 . exon 32182 32203 . + . ID=Phyra83598.2;Parent=Phyra83598;constitutive=1;ensembl_phase=2;rank=2 scaffold_92 ensembl protein_coding_gene 37561 38439 . + . ID=Phyra83599;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000005;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 37561 38439 . + . ID=Phyra83599;Parent=Phyra83599;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 37561 37972 . + 0 ID=Phyra83599;Parent=Phyra83599;rank=1 scaffold_92 . exon 37561 37972 . + . ID=Phyra83599.1;Parent=Phyra83599;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 . CDS 38081 38439 . + 0 ID=Phyra83599;Parent=Phyra83599;rank=2 scaffold_92 . exon 38081 38439 . + . ID=Phyra83599.2;Parent=Phyra83599;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 . biological_region 45193 45196 0.999 + . logic_name=eponine scaffold_92 . biological_region 45295 45298 0.999 - . logic_name=eponine scaffold_92 . repeat_region 48581 48588 . ? . description=dust scaffold_92 ensembl protein_coding_gene 44230 46036 . - . ID=Phyra83600;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000006;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 44230 46036 . - . ID=Phyra83600;Parent=Phyra83600;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 44230 44609 . - 0 ID=Phyra83600;Parent=Phyra83600;rank=2 scaffold_92 . exon 44230 44609 . - . ID=Phyra83600.2;Parent=Phyra83600;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 . CDS 44650 46036 . - 0 ID=Phyra83600;Parent=Phyra83600;rank=1 scaffold_92 . exon 44650 46036 . - . ID=Phyra83600.1;Parent=Phyra83600;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 ensembl protein_coding_gene 47102 47969 . - . ID=Phyra83601;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000007;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 47102 47969 . - . ID=Phyra83601;Parent=Phyra83601;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 47102 47241 . - 0 ID=Phyra83601;Parent=Phyra83601;rank=2 scaffold_92 . exon 47102 47241 . - . ID=Phyra83601.2;Parent=Phyra83601;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 . CDS 47318 47969 . - 0 ID=Phyra83601;Parent=Phyra83601;rank=1 scaffold_92 . exon 47318 47969 . - . ID=Phyra83601.1;Parent=Phyra83601;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 . repeat_region 50330 50369 . ? . description=trf scaffold_92 . repeat_region 52947 52972 . ? . description=trf scaffold_92 . repeat_region 57074 57099 . ? . description=trf scaffold_92 ensembl protein_coding_gene 59107 59889 . - . ID=Phyra72136;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_92000001;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 59107 59889 . - . ID=Phyra72136;Parent=Phyra72136;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 59107 59889 . - 0 ID=Phyra72136;Parent=Phyra72136;rank=1 scaffold_92 . exon 59107 59889 . - . ID=Phyra72136.1;Parent=Phyra72136;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 51709 52695 . + . ID=Phyra83602;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000008;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 51709 52695 . + . ID=Phyra83602;Parent=Phyra83602;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 51709 51795 . + 0 ID=Phyra83602;Parent=Phyra83602;rank=1 scaffold_92 . exon 51709 51795 . + . ID=Phyra83602.1;Parent=Phyra83602;constitutive=1;rank=1 scaffold_92 . CDS 51880 52695 . + 0 ID=Phyra83602;Parent=Phyra83602;rank=2 scaffold_92 . exon 51880 52695 . + . ID=Phyra83602.2;Parent=Phyra83602;constitutive=1;rank=2 scaffold_92 ensembl protein_coding_gene 53220 53795 . - . ID=Phyra83603;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000009;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 53220 53795 . - . ID=Phyra83603;Parent=Phyra83603;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 53220 53795 . - 0 ID=Phyra83603;Parent=Phyra83603;rank=1 scaffold_92 . exon 53220 53795 . - . ID=Phyra83603.1;Parent=Phyra83603;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 55686 56450 . - . ID=Phyra83604;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000010;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 55686 56450 . - . ID=Phyra83604;Parent=Phyra83604;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 55686 56450 . - 0 ID=Phyra83604;Parent=Phyra83604;rank=1 scaffold_92 . exon 55686 56450 . - . ID=Phyra83604.1;Parent=Phyra83604;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 57247 58161 . + . ID=Phyra83605;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000011;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 57247 58161 . + . ID=Phyra83605;Parent=Phyra83605;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 57247 58161 . + 0 ID=Phyra83605;Parent=Phyra83605;rank=1 scaffold_92 . exon 57247 58161 . + . ID=Phyra83605.1;Parent=Phyra83605;constitutive=1;rank=1 scaffold_92 . repeat_region 62000 62008 . ? . description=dust scaffold_92 . repeat_region 62658 62666 . ? . description=dust scaffold_92 . repeat_region 66352 66362 . ? . description=dust scaffold_92 . repeat_region 67201 67209 . ? . description=dust scaffold_92 . biological_region 69446 69450 0.999 + . logic_name=eponine scaffold_92 ensembl protein_coding_gene 61410 61628 . - . ID=Phyra54578;biotype=protein_coding;external_name=gwEuk.92.10.1;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 61410 61628 . - . ID=Phyra54578;Parent=Phyra54578;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 61410 61511 . - 0 ID=Phyra54578;Parent=Phyra54578;rank=2 scaffold_92 . exon 61410 61511 . - . ID=Phyra54578.2;Parent=Phyra54578;constitutive=1;rank=2 scaffold_92 . CDS 61578 61628 . - 0 ID=Phyra54578;Parent=Phyra54578;rank=1 scaffold_92 . exon 61578 61628 . - . ID=Phyra54578.1;Parent=Phyra54578;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 63898 64683 . - . ID=Phyra72137;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_92000002;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 63898 64683 . - . ID=Phyra72137;Parent=Phyra72137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 63898 64683 . - 0 ID=Phyra72137;Parent=Phyra72137;rank=1 scaffold_92 . exon 63898 64683 . - . ID=Phyra72137.1;Parent=Phyra72137;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 67284 69818 . - . ID=Phyra83608;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000014;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 67284 69818 . - . ID=Phyra83608;Parent=Phyra83608;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 67284 69818 . - 0 ID=Phyra83608;Parent=Phyra83608;rank=1 scaffold_92 . exon 67284 69818 . - . ID=Phyra83608.1;Parent=Phyra83608;constitutive=1;rank=1 scaffold_92 . repeat_region 70737 70782 . ? . description=trf scaffold_92 . repeat_region 77563 77697 . ? . description=trf scaffold_92 ensembl tRNA_gene 75178 75250 . + . ID=EPrPRAG00000000043;biotype=tRNA;description=tRNA-Arg for anticodon CCU [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_92 ensembl transcript 75178 75250 . + . ID=EPrPRAT00000000043;Parent=EPrPRAG00000000043;biotype=tRNA;logic_name=ncrna_eg scaffold_92 . exon 75178 75250 . + . ID=EPrPRAE00000000043;Parent=EPrPRAT00000000043;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 ensembl protein_coding_gene 71100 73466 . - . ID=Phyra83609;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000015;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 71100 73466 . - . ID=Phyra83609;Parent=Phyra83609;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 71100 71249 . - 0 ID=Phyra83609;Parent=Phyra83609;rank=7 scaffold_92 . exon 71100 71249 . - . ID=Phyra83609.7;Parent=Phyra83609;constitutive=1;rank=7 scaffold_92 . CDS 71325 71396 . - 0 ID=Phyra83609;Parent=Phyra83609;rank=6 scaffold_92 . exon 71325 71396 . - . ID=Phyra83609.6;Parent=Phyra83609;constitutive=1;rank=6 scaffold_92 . CDS 71472 71606 . - 0 ID=Phyra83609;Parent=Phyra83609;rank=5 scaffold_92 . exon 71472 71606 . - . ID=Phyra83609.5;Parent=Phyra83609;constitutive=1;rank=5 scaffold_92 . CDS 71685 71783 . - 0 ID=Phyra83609;Parent=Phyra83609;rank=4 scaffold_92 . exon 71685 71783 . - . ID=Phyra83609.4;Parent=Phyra83609;constitutive=1;rank=4 scaffold_92 . CDS 71866 72708 . - 0 ID=Phyra83609;Parent=Phyra83609;rank=3 scaffold_92 . exon 71866 72708 . - . ID=Phyra83609.3;Parent=Phyra83609;constitutive=1;rank=3 scaffold_92 . CDS 72764 72834 . - 0 ID=Phyra83609;Parent=Phyra83609;rank=2 scaffold_92 . exon 72764 72834 . - . ID=Phyra83609.2;Parent=Phyra83609;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 . CDS 72899 73466 . - 0 ID=Phyra83609;Parent=Phyra83609;rank=1 scaffold_92 . exon 72899 73466 . - . ID=Phyra83609.1;Parent=Phyra83609;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 ensembl protein_coding_gene 74279 75061 . + . ID=Phyra83610;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000016;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 74279 75061 . + . ID=Phyra83610;Parent=Phyra83610;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 74279 75061 . + 0 ID=Phyra83610;Parent=Phyra83610;rank=1 scaffold_92 . exon 74279 75061 . + . ID=Phyra83610.1;Parent=Phyra83610;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 76724 79271 . - . ID=Phyra83611;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000017;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 76724 79271 . - . ID=Phyra83611;Parent=Phyra83611;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 76724 77852 . - 0 ID=Phyra83611;Parent=Phyra83611;rank=2 scaffold_92 . exon 76724 77852 . - . ID=Phyra83611.2;Parent=Phyra83611;constitutive=1;ensembl_phase=2;rank=2 scaffold_92 . CDS 78274 79271 . - 0 ID=Phyra83611;Parent=Phyra83611;rank=1 scaffold_92 . exon 78274 79271 . - . ID=Phyra83611.1;Parent=Phyra83611;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 . repeat_region 82222 82271 . ? . description=dust scaffold_92 . repeat_region 84397 84407 . ? . description=dust scaffold_92 . biological_region 84642 84643 0.999 - . logic_name=eponine scaffold_92 . biological_region 85101 85106 0.999 - . logic_name=eponine scaffold_92 . repeat_region 86588 86627 . ? . description=dust scaffold_92 . biological_region 86763 86763 0.999 + . logic_name=eponine scaffold_92 . biological_region 86777 86783 0.999 - . logic_name=eponine scaffold_92 . biological_region 87698 87699 0.999 + . logic_name=eponine scaffold_92 . biological_region 87961 87964 0.999 + . logic_name=eponine scaffold_92 . biological_region 88305 88305 0.999 + . logic_name=eponine scaffold_92 . biological_region 88321 88326 0.999 + . logic_name=eponine scaffold_92 . biological_region 88321 88326 0.999 - . logic_name=eponine scaffold_92 . biological_region 88376 88383 0.999 + . logic_name=eponine scaffold_92 . biological_region 88396 88400 0.999 + . logic_name=eponine scaffold_92 . biological_region 88408 88414 0.999 + . logic_name=eponine scaffold_92 . biological_region 88457 88468 0.999 - . logic_name=eponine scaffold_92 ensembl protein_coding_gene 79727 81376 . + . ID=Phyra83612;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000018;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 79727 81376 . + . ID=Phyra83612;Parent=Phyra83612;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 79727 81376 . + 0 ID=Phyra83612;Parent=Phyra83612;rank=1 scaffold_92 . exon 79727 81376 . + . ID=Phyra83612.1;Parent=Phyra83612;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 81861 84275 . + . ID=Phyra83613;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000019;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 81861 84275 . + . ID=Phyra83613;Parent=Phyra83613;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 81861 82202 . + 0 ID=Phyra83613;Parent=Phyra83613;rank=1 scaffold_92 . exon 81861 82202 . + . ID=Phyra83613.1;Parent=Phyra83613;constitutive=1;rank=1 scaffold_92 . CDS 82316 83866 . + 0 ID=Phyra83613;Parent=Phyra83613;rank=2 scaffold_92 . exon 82316 83866 . + . ID=Phyra83613.2;Parent=Phyra83613;constitutive=1;rank=2 scaffold_92 . CDS 83995 84156 . + 0 ID=Phyra83613;Parent=Phyra83613;rank=3 scaffold_92 . exon 83995 84156 . + . ID=Phyra83613.3;Parent=Phyra83613;constitutive=1;rank=3 scaffold_92 . CDS 84261 84275 . + 0 ID=Phyra83613;Parent=Phyra83613;rank=4 scaffold_92 . exon 84261 84275 . + . ID=Phyra83613.4;Parent=Phyra83613;constitutive=1;rank=4 scaffold_92 ensembl protein_coding_gene 84477 87794 . - . ID=Phyra83614;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000020;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 84477 87794 . - . ID=Phyra83614;Parent=Phyra83614;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 84477 87482 . - 0 ID=Phyra83614;Parent=Phyra83614;rank=3 scaffold_92 . exon 84477 87482 . - . ID=Phyra83614.3;Parent=Phyra83614;constitutive=1;rank=3 scaffold_92 . CDS 87557 87581 . - 0 ID=Phyra83614;Parent=Phyra83614;rank=2 scaffold_92 . exon 87557 87581 . - . ID=Phyra83614.2;Parent=Phyra83614;constitutive=1;ensembl_phase=2;rank=2 scaffold_92 . CDS 87667 87794 . - 0 ID=Phyra83614;Parent=Phyra83614;rank=1 scaffold_92 . exon 87667 87794 . - . ID=Phyra83614.1;Parent=Phyra83614;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 ensembl protein_coding_gene 88788 89510 . + . ID=Phyra83615;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000021;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 88788 89510 . + . ID=Phyra83615;Parent=Phyra83615;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 88788 89510 . + 0 ID=Phyra83615;Parent=Phyra83615;rank=1 scaffold_92 . exon 88788 89510 . + . ID=Phyra83615.1;Parent=Phyra83615;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 94822 96001 . + . ID=Phyra72138;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_92000003;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 94822 96001 . + . ID=Phyra72138;Parent=Phyra72138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 94822 94923 . + 0 ID=Phyra72138;Parent=Phyra72138;rank=1 scaffold_92 . exon 94822 94923 . + . ID=Phyra72138.1;Parent=Phyra72138;constitutive=1;rank=1 scaffold_92 . CDS 95042 95641 . + 0 ID=Phyra72138;Parent=Phyra72138;rank=2 scaffold_92 . exon 95042 95641 . + . ID=Phyra72138.2;Parent=Phyra72138;constitutive=1;rank=2 scaffold_92 . CDS 95822 96001 . + 0 ID=Phyra72138;Parent=Phyra72138;rank=3 scaffold_92 . exon 95822 96001 . + . ID=Phyra72138.3;Parent=Phyra72138;constitutive=1;rank=3 scaffold_92 ensembl protein_coding_gene 96086 96657 . - . ID=Phyra72139;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_92000004;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 96086 96657 . - . ID=Phyra72139;Parent=Phyra72139;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 96086 96313 . - 0 ID=Phyra72139;Parent=Phyra72139;rank=2 scaffold_92 . exon 96086 96313 . - . ID=Phyra72139.2;Parent=Phyra72139;constitutive=1;rank=2 scaffold_92 . CDS 96385 96657 . - 0 ID=Phyra72139;Parent=Phyra72139;rank=1 scaffold_92 . exon 96385 96657 . - . ID=Phyra72139.1;Parent=Phyra72139;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 89582 91903 . - . ID=Phyra83616;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000022;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 89582 91903 . - . ID=Phyra83616;Parent=Phyra83616;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 89582 91547 . - 0 ID=Phyra83616;Parent=Phyra83616;rank=2 scaffold_92 . exon 89582 91547 . - . ID=Phyra83616.2;Parent=Phyra83616;constitutive=1;ensembl_phase=2;rank=2 scaffold_92 . CDS 91746 91903 . - 0 ID=Phyra83616;Parent=Phyra83616;rank=1 scaffold_92 . exon 91746 91903 . - . ID=Phyra83616.1;Parent=Phyra83616;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 ensembl protein_coding_gene 92043 93005 . - . ID=Phyra83617;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000023;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 92043 93005 . - . ID=Phyra83617;Parent=Phyra83617;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 92043 92321 . - 0 ID=Phyra83617;Parent=Phyra83617;rank=5 scaffold_92 . exon 92043 92321 . - . ID=Phyra83617.5;Parent=Phyra83617;constitutive=1;rank=5 scaffold_92 . CDS 92380 92474 . - 0 ID=Phyra83617;Parent=Phyra83617;rank=4 scaffold_92 . exon 92380 92474 . - . ID=Phyra83617.4;Parent=Phyra83617;constitutive=1;ensembl_phase=1;rank=4 scaffold_92 . CDS 92540 92612 . - 0 ID=Phyra83617;Parent=Phyra83617;rank=3 scaffold_92 . exon 92540 92612 . - . ID=Phyra83617.3;Parent=Phyra83617;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_92 . CDS 92681 92721 . - 0 ID=Phyra83617;Parent=Phyra83617;rank=2 scaffold_92 . exon 92681 92721 . - . ID=Phyra83617.2;Parent=Phyra83617;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 . CDS 92792 93005 . - 0 ID=Phyra83617;Parent=Phyra83617;rank=1 scaffold_92 . exon 92792 93005 . - . ID=Phyra83617.1;Parent=Phyra83617;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 ensembl protein_coding_gene 93209 93844 . + . ID=Phyra83618;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000024;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 93209 93844 . + . ID=Phyra83618;Parent=Phyra83618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 93209 93844 . + 0 ID=Phyra83618;Parent=Phyra83618;rank=1 scaffold_92 . exon 93209 93844 . + . ID=Phyra83618.1;Parent=Phyra83618;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 94015 94685 . - . ID=Phyra83619;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000025;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 94015 94685 . - . ID=Phyra83619;Parent=Phyra83619;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 94015 94164 . - 0 ID=Phyra83619;Parent=Phyra83619;rank=2 scaffold_92 . exon 94015 94164 . - . ID=Phyra83619.2;Parent=Phyra83619;constitutive=1;rank=2 scaffold_92 . CDS 94227 94685 . - 0 ID=Phyra83619;Parent=Phyra83619;rank=1 scaffold_92 . exon 94227 94685 . - . ID=Phyra83619.1;Parent=Phyra83619;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 96887 98001 . + . ID=Phyra83622;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000028;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 96887 98001 . + . ID=Phyra83622;Parent=Phyra83622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 96887 97246 . + 0 ID=Phyra83622;Parent=Phyra83622;rank=1 scaffold_92 . exon 96887 97246 . + . ID=Phyra83622.1;Parent=Phyra83622;constitutive=1;rank=1 scaffold_92 . CDS 97267 98001 . + 0 ID=Phyra83622;Parent=Phyra83622;rank=2 scaffold_92 . exon 97267 98001 . + . ID=Phyra83622.2;Parent=Phyra83622;constitutive=1;rank=2 scaffold_92 ensembl protein_coding_gene 98237 99262 . - . ID=Phyra83623;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000029;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 98237 99262 . - . ID=Phyra83623;Parent=Phyra83623;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 98237 99262 . - 0 ID=Phyra83623;Parent=Phyra83623;rank=1 scaffold_92 . exon 98237 99262 . - . ID=Phyra83623.1;Parent=Phyra83623;constitutive=1;rank=1 scaffold_92 . biological_region 101459 101459 0.999 + . logic_name=eponine scaffold_92 . biological_region 102073 102076 0.999 - . logic_name=eponine scaffold_92 . biological_region 102507 102511 0.999 - . logic_name=eponine scaffold_92 . biological_region 103395 103399 0.999 - . logic_name=eponine scaffold_92 . biological_region 104394 104395 0.999 + . logic_name=eponine scaffold_92 . biological_region 104816 104818 0.999 + . logic_name=eponine scaffold_92 . biological_region 104873 104877 0.999 + . logic_name=eponine scaffold_92 . biological_region 104889 104893 0.999 - . logic_name=eponine scaffold_92 . biological_region 104893 104895 0.999 + . logic_name=eponine scaffold_92 . biological_region 105324 105325 0.999 + . logic_name=eponine scaffold_92 . biological_region 105406 105410 0.999 - . logic_name=eponine scaffold_92 . repeat_region 107367 107524 . ? . description=dust scaffold_92 . biological_region 109181 109185 0.999 + . logic_name=eponine scaffold_92 ensembl protein_coding_gene 100619 103477 . + . ID=Phyra54597;biotype=protein_coding;external_name=gwEuk.92.29.1;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 100619 103477 . + . ID=Phyra54597;Parent=Phyra54597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 100619 101221 . + 0 ID=Phyra54597;Parent=Phyra54597;rank=1 scaffold_92 . exon 100619 101221 . + . ID=Phyra54597.1;Parent=Phyra54597;constitutive=1;rank=1 scaffold_92 . CDS 101282 103477 . + 0 ID=Phyra54597;Parent=Phyra54597;rank=2 scaffold_92 . exon 101282 103477 . + . ID=Phyra54597.2;Parent=Phyra54597;constitutive=1;rank=2 scaffold_92 ensembl protein_coding_gene 104581 105588 . + . ID=Phyra72140;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_92000005;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 104581 105588 . + . ID=Phyra72140;Parent=Phyra72140;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 104581 105588 . + 0 ID=Phyra72140;Parent=Phyra72140;rank=1 scaffold_92 . exon 104581 105588 . + . ID=Phyra72140.1;Parent=Phyra72140;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 109067 109777 . + . ID=Phyra83626;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000032;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 109067 109777 . + . ID=Phyra83626;Parent=Phyra83626;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 109067 109777 . + 0 ID=Phyra83626;Parent=Phyra83626;rank=1 scaffold_92 . exon 109067 109777 . + . ID=Phyra83626.1;Parent=Phyra83626;constitutive=1;rank=1 scaffold_92 . repeat_region 110768 110795 . ? . description=trf scaffold_92 . repeat_region 114118 114158 . ? . description=trf scaffold_92 ensembl protein_coding_gene 109960 111177 . - . ID=Phyra72141;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_92000006;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 109960 111177 . - . ID=Phyra72141;Parent=Phyra72141;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 109960 110760 . - 0 ID=Phyra72141;Parent=Phyra72141;rank=2 scaffold_92 . exon 109960 110760 . - . ID=Phyra72141.2;Parent=Phyra72141;constitutive=1;rank=2 scaffold_92 . CDS 110854 111177 . - 0 ID=Phyra72141;Parent=Phyra72141;rank=1 scaffold_92 . exon 110854 111177 . - . ID=Phyra72141.1;Parent=Phyra72141;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 118533 119516 . + . ID=Phyra72142;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_92000007;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 118533 119516 . + . ID=Phyra72142;Parent=Phyra72142;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 118533 119516 . + 0 ID=Phyra72142;Parent=Phyra72142;rank=1 scaffold_92 . exon 118533 119516 . + . ID=Phyra72142.1;Parent=Phyra72142;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 113417 114175 . - . ID=Phyra83628;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000034;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 113417 114175 . - . ID=Phyra83628;Parent=Phyra83628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 113417 114175 . - 0 ID=Phyra83628;Parent=Phyra83628;rank=1 scaffold_92 . exon 113417 114175 . - . ID=Phyra83628.1;Parent=Phyra83628;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 116092 116937 . + . ID=Phyra83629;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000035;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 116092 116937 . + . ID=Phyra83629;Parent=Phyra83629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 116092 116937 . + 0 ID=Phyra83629;Parent=Phyra83629;rank=1 scaffold_92 . exon 116092 116937 . + . ID=Phyra83629.1;Parent=Phyra83629;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 117124 118371 . - . ID=Phyra83630;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000036;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 117124 118371 . - . ID=Phyra83630;Parent=Phyra83630;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 117124 118371 . - 0 ID=Phyra83630;Parent=Phyra83630;rank=1 scaffold_92 . exon 117124 118371 . - . ID=Phyra83630.1;Parent=Phyra83630;constitutive=1;rank=1 scaffold_92 . repeat_region 126397 126407 . ? . description=dust scaffold_92 . biological_region 128477 128478 0.999 + . logic_name=eponine scaffold_92 . biological_region 128612 128616 0.999 - . logic_name=eponine scaffold_92 ensembl protein_coding_gene 126119 129632 . + . ID=Phyra54618;biotype=protein_coding;external_name=gwEuk.92.50.1;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 126119 129632 . + . ID=Phyra54618;Parent=Phyra54618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 126119 126388 . + 0 ID=Phyra54618;Parent=Phyra54618;rank=1 scaffold_92 . exon 126119 126388 . + . ID=Phyra54618.1;Parent=Phyra54618;constitutive=1;rank=1 scaffold_92 . CDS 126459 127433 . + 0 ID=Phyra54618;Parent=Phyra54618;rank=2 scaffold_92 . exon 126459 127433 . + . ID=Phyra54618.2;Parent=Phyra54618;constitutive=1;rank=2 scaffold_92 . CDS 127620 127898 . + 0 ID=Phyra54618;Parent=Phyra54618;rank=3 scaffold_92 . exon 127620 127898 . + . ID=Phyra54618.3;Parent=Phyra54618;constitutive=1;rank=3 scaffold_92 . CDS 127950 128808 . + 0 ID=Phyra54618;Parent=Phyra54618;rank=4 scaffold_92 . exon 127950 128808 . + . ID=Phyra54618.4;Parent=Phyra54618;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_92 . CDS 128842 129632 . + 0 ID=Phyra54618;Parent=Phyra54618;rank=5 scaffold_92 . exon 128842 129632 . + . ID=Phyra54618.5;Parent=Phyra54618;constitutive=1;ensembl_phase=1;rank=5 scaffold_92 ensembl protein_coding_gene 120032 121295 . + . ID=Phyra83632;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000038;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 120032 121295 . + . ID=Phyra83632;Parent=Phyra83632;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 120032 120099 . + 0 ID=Phyra83632;Parent=Phyra83632;rank=1 scaffold_92 . exon 120032 120099 . + . ID=Phyra83632.1;Parent=Phyra83632;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 . CDS 120170 120340 . + 0 ID=Phyra83632;Parent=Phyra83632;rank=2 scaffold_92 . exon 120170 120340 . + . ID=Phyra83632.2;Parent=Phyra83632;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_92 . CDS 120413 121295 . + 0 ID=Phyra83632;Parent=Phyra83632;rank=3 scaffold_92 . exon 120413 121295 . + . ID=Phyra83632.3;Parent=Phyra83632;constitutive=1;ensembl_phase=2;rank=3 scaffold_92 ensembl protein_coding_gene 121486 123670 . + . ID=Phyra83633;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000039;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 121486 123670 . + . ID=Phyra83633;Parent=Phyra83633;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 121486 123547 . + 0 ID=Phyra83633;Parent=Phyra83633;rank=1 scaffold_92 . exon 121486 123547 . + . ID=Phyra83633.1;Parent=Phyra83633;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 . CDS 123651 123670 . + 0 ID=Phyra83633;Parent=Phyra83633;rank=2 scaffold_92 . exon 123651 123670 . + . ID=Phyra83633.2;Parent=Phyra83633;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 ensembl protein_coding_gene 124809 125493 . - . ID=Phyra83634;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000040;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 124809 125493 . - . ID=Phyra83634;Parent=Phyra83634;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 124809 125341 . - 0 ID=Phyra83634;Parent=Phyra83634;rank=2 scaffold_92 . exon 124809 125341 . - . ID=Phyra83634.2;Parent=Phyra83634;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 . CDS 125406 125493 . - 0 ID=Phyra83634;Parent=Phyra83634;rank=1 scaffold_92 . exon 125406 125493 . - . ID=Phyra83634.1;Parent=Phyra83634;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 ensembl protein_coding_gene 132854 134660 . - . ID=Phyra83636;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000042;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 132854 134660 . - . ID=Phyra83636;Parent=Phyra83636;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 132854 134399 . - 0 ID=Phyra83636;Parent=Phyra83636;rank=3 scaffold_92 . exon 132854 134399 . - . ID=Phyra83636.3;Parent=Phyra83636;constitutive=1;ensembl_phase=2;rank=3 scaffold_92 . CDS 134479 134539 . - 0 ID=Phyra83636;Parent=Phyra83636;rank=2 scaffold_92 . exon 134479 134539 . - . ID=Phyra83636.2;Parent=Phyra83636;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_92 . CDS 134606 134660 . - 0 ID=Phyra83636;Parent=Phyra83636;rank=1 scaffold_92 . exon 134606 134660 . - . ID=Phyra83636.1;Parent=Phyra83636;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 ensembl protein_coding_gene 134852 138493 . + . ID=Phyra83637;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000043;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 134852 138493 . + . ID=Phyra83637;Parent=Phyra83637;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 134852 138493 . + 0 ID=Phyra83637;Parent=Phyra83637;rank=1 scaffold_92 . exon 134852 138493 . + . ID=Phyra83637.1;Parent=Phyra83637;constitutive=1;rank=1 scaffold_92 . repeat_region 142971 143019 . ? . description=trf scaffold_92 ensembl protein_coding_gene 140624 144814 . + . ID=Phyra83638;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000044;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 140624 144814 . + . ID=Phyra83638;Parent=Phyra83638;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 140624 144814 . + 0 ID=Phyra83638;Parent=Phyra83638;rank=1 scaffold_92 . exon 140624 144814 . + . ID=Phyra83638.1;Parent=Phyra83638;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 145143 149795 . - . ID=Phyra83639;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000045;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 145143 149795 . - . ID=Phyra83639;Parent=Phyra83639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 145143 145232 . - 0 ID=Phyra83639;Parent=Phyra83639;rank=5 scaffold_92 . exon 145143 145232 . - . ID=Phyra83639.5;Parent=Phyra83639;constitutive=1;rank=5 scaffold_92 . CDS 145407 145464 . - 0 ID=Phyra83639;Parent=Phyra83639;rank=4 scaffold_92 . exon 145407 145464 . - . ID=Phyra83639.4;Parent=Phyra83639;constitutive=1;ensembl_phase=2;rank=4 scaffold_92 . CDS 145529 145717 . - 0 ID=Phyra83639;Parent=Phyra83639;rank=3 scaffold_92 . exon 145529 145717 . - . ID=Phyra83639.3;Parent=Phyra83639;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_92 . CDS 145780 148110 . - 0 ID=Phyra83639;Parent=Phyra83639;rank=2 scaffold_92 . exon 145780 148110 . - . ID=Phyra83639.2;Parent=Phyra83639;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_92 . CDS 148171 149795 . - 0 ID=Phyra83639;Parent=Phyra83639;rank=1 scaffold_92 . exon 148171 149795 . - . ID=Phyra83639.1;Parent=Phyra83639;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 . biological_region 155778 155783 0.999 - . logic_name=eponine scaffold_92 . repeat_region 158805 158818 . ? . description=dust scaffold_92 ensembl protein_coding_gene 150481 150795 . + . ID=Phyra83640;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000046;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 150481 150795 . + . ID=Phyra83640;Parent=Phyra83640;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 150481 150795 . + 0 ID=Phyra83640;Parent=Phyra83640;rank=1 scaffold_92 . exon 150481 150795 . + . ID=Phyra83640.1;Parent=Phyra83640;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 150901 152091 . - . ID=Phyra83641;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000047;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 150901 152091 . - . ID=Phyra83641;Parent=Phyra83641;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 150901 152091 . - 0 ID=Phyra83641;Parent=Phyra83641;rank=1 scaffold_92 . exon 150901 152091 . - . ID=Phyra83641.1;Parent=Phyra83641;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 154160 158218 . - . ID=Phyra83642;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000048;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 154160 158218 . - . ID=Phyra83642;Parent=Phyra83642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 154160 158218 . - 0 ID=Phyra83642;Parent=Phyra83642;rank=1 scaffold_92 . exon 154160 158218 . - . ID=Phyra83642.1;Parent=Phyra83642;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 158802 161272 . - . ID=Phyra83643;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000049;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 158802 161272 . - . ID=Phyra83643;Parent=Phyra83643;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 158802 161041 . - 0 ID=Phyra83643;Parent=Phyra83643;rank=2 scaffold_92 . exon 158802 161041 . - . ID=Phyra83643.2;Parent=Phyra83643;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 . CDS 161110 161272 . - 0 ID=Phyra83643;Parent=Phyra83643;rank=1 scaffold_92 . repeat_region 168423 168536 . - . description=Gypsy-1-I_PI-int scaffold_92 . exon 161110 161272 . - . ID=Phyra83643.1;Parent=Phyra83643;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 ensembl protein_coding_gene 161824 165879 . - . ID=Phyra83644;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000050;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 161824 165879 . - . ID=Phyra83644;Parent=Phyra83644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 161824 165879 . - 0 ID=Phyra83644;Parent=Phyra83644;rank=1 scaffold_92 . exon 161824 165879 . - . ID=Phyra83644.1;Parent=Phyra83644;constitutive=1;rank=1 scaffold_92 . repeat_region 168822 168848 . ? . description=trf scaffold_92 . repeat_region 169548 170163 . ? . description=dust scaffold_92 . repeat_region 170168 172171 . - . description=GypsyPi-1c_I-int scaffold_92 . biological_region 172734 172738 0.999 - . logic_name=eponine scaffold_92 . biological_region 172774 172775 0.999 + . logic_name=eponine scaffold_92 . biological_region 172836 172841 0.999 - . logic_name=eponine scaffold_92 . biological_region 172887 172895 0.999 - . logic_name=eponine scaffold_92 . repeat_region 172914 172922 . ? . description=dust scaffold_92 . repeat_region 173347 173396 . ? . description=dust scaffold_92 . biological_region 174427 174431 0.999 - . logic_name=eponine scaffold_92 . repeat_region 175928 177278 . ? . description=dust scaffold_92 . repeat_region 178450 179729 . ? . description=dust scaffold_92 ensembl protein_coding_gene 171121 172847 . - . ID=Phyra83645;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_92000051;logic_name=jgi_phyra1 scaffold_92 ensembl transcript 171121 172847 . - . ID=Phyra83645;Parent=Phyra83645;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_92 . CDS 171121 171159 . - 0 ID=Phyra83645;Parent=Phyra83645;rank=4 scaffold_92 . exon 171121 171159 . - . ID=Phyra83645.4;Parent=Phyra83645;constitutive=1;rank=4 scaffold_92 . CDS 171218 171427 . - 0 ID=Phyra83645;Parent=Phyra83645;rank=3 scaffold_92 . exon 171218 171427 . - . ID=Phyra83645.3;Parent=Phyra83645;constitutive=1;rank=3 scaffold_92 . CDS 171491 172177 . - 0 ID=Phyra83645;Parent=Phyra83645;rank=2 scaffold_92 . exon 171491 172177 . - . ID=Phyra83645.2;Parent=Phyra83645;constitutive=1;rank=2 scaffold_92 . CDS 172224 172847 . - 0 ID=Phyra83645;Parent=Phyra83645;rank=1 scaffold_92 . exon 172224 172847 . - . ID=Phyra83645.1;Parent=Phyra83645;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_90 1 192427 scaffold_90 . repeat_region 21 30 . ? . description=dust scaffold_90 . repeat_region 321 340 . ? . description=trf scaffold_90 . biological_region 1414 1414 0.999 + . logic_name=eponine scaffold_90 . repeat_region 3281 6485 . ? . description=dust scaffold_90 ensembl protein_coding_gene 510 1769 . + . ID=Phyra83509;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000001;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 510 1769 . + . ID=Phyra83509;Parent=Phyra83509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 510 1769 . + 0 ID=Phyra83509;Parent=Phyra83509;rank=1 scaffold_90 . exon 510 1769 . + . ID=Phyra83509.1;Parent=Phyra83509;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 1995 3119 . - . ID=Phyra83510;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000002;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 1995 3119 . - . ID=Phyra83510;Parent=Phyra83510;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 1995 3119 . - 0 ID=Phyra83510;Parent=Phyra83510;rank=1 scaffold_90 . exon 1995 3119 . - . ID=Phyra83510.1;Parent=Phyra83510;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 7488 9431 . + . ID=Phyra83511;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000003;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 7488 9431 . + . ID=Phyra83511;Parent=Phyra83511;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 7488 7653 . + 0 ID=Phyra83511;Parent=Phyra83511;rank=1 scaffold_90 . exon 7488 7653 . + . ID=Phyra83511.1;Parent=Phyra83511;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 . CDS 7716 7762 . + 0 ID=Phyra83511;Parent=Phyra83511;rank=2 scaffold_90 . exon 7716 7762 . + . ID=Phyra83511.2;Parent=Phyra83511;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 . CDS 7819 8025 . + 0 ID=Phyra83511;Parent=Phyra83511;rank=3 scaffold_90 . exon 7819 8025 . + . ID=Phyra83511.3;Parent=Phyra83511;constitutive=1;rank=3 scaffold_90 . CDS 8103 9431 . + 0 ID=Phyra83511;Parent=Phyra83511;rank=4 scaffold_90 . exon 8103 9431 . + . ID=Phyra83511.4;Parent=Phyra83511;constitutive=1;rank=4 scaffold_90 ensembl protein_coding_gene 9589 13461 . + . ID=Phyra83512;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000004;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 9589 13461 . + . ID=Phyra83512;Parent=Phyra83512;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 9589 9750 . + 0 ID=Phyra83512;Parent=Phyra83512;rank=1 scaffold_90 . exon 9589 9750 . + . ID=Phyra83512.1;Parent=Phyra83512;constitutive=1;rank=1 scaffold_90 . CDS 9820 9932 . + 0 ID=Phyra83512;Parent=Phyra83512;rank=2 scaffold_90 . CDS 9999 10068 . + 0 ID=Phyra83512;Parent=Phyra83512;rank=3 scaffold_90 . CDS 10105 13461 . + 0 ID=Phyra83512;Parent=Phyra83512;rank=4 scaffold_90 . exon 9820 9932 . + . ID=Phyra83512.2;Parent=Phyra83512;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_90 . exon 9999 10068 . + . ID=Phyra83512.3;Parent=Phyra83512;constitutive=1;ensembl_phase=2;rank=3 scaffold_90 . exon 10105 13461 . + . ID=Phyra83512.4;Parent=Phyra83512;constitutive=1;rank=4 scaffold_90 ensembl protein_coding_gene 14374 17711 . - . ID=Phyra83513;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000005;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 14374 17711 . - . ID=Phyra83513;Parent=Phyra83513;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 14374 15314 . - 0 ID=Phyra83513;Parent=Phyra83513;rank=6 scaffold_90 . exon 14374 15314 . - . ID=Phyra83513.6;Parent=Phyra83513;constitutive=1;ensembl_phase=1;rank=6 scaffold_90 . CDS 15374 15491 . - 0 ID=Phyra83513;Parent=Phyra83513;rank=5 scaffold_90 . exon 15374 15491 . - . ID=Phyra83513.5;Parent=Phyra83513;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_90 . CDS 15556 16387 . - 0 ID=Phyra83513;Parent=Phyra83513;rank=4 scaffold_90 . exon 15556 16387 . - . ID=Phyra83513.4;Parent=Phyra83513;constitutive=1;ensembl_phase=2;rank=4 scaffold_90 . CDS 16449 16794 . - 0 ID=Phyra83513;Parent=Phyra83513;rank=3 scaffold_90 . exon 16449 16794 . - . ID=Phyra83513.3;Parent=Phyra83513;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_90 . CDS 16854 16999 . - 0 ID=Phyra83513;Parent=Phyra83513;rank=2 scaffold_90 . exon 16854 16999 . - . ID=Phyra83513.2;Parent=Phyra83513;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_90 . CDS 17065 17711 . - 0 ID=Phyra83513;Parent=Phyra83513;rank=1 scaffold_90 . exon 17065 17711 . - . ID=Phyra83513.1;Parent=Phyra83513;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 ensembl protein_coding_gene 18270 20328 . + . ID=Phyra83514;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000006;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 18270 20328 . + . ID=Phyra83514;Parent=Phyra83514;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 18270 20245 . + 0 ID=Phyra83514;Parent=Phyra83514;rank=1 scaffold_90 . exon 18270 20245 . + . ID=Phyra83514.1;Parent=Phyra83514;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 . CDS 20301 20328 . + 0 ID=Phyra83514;Parent=Phyra83514;rank=2 scaffold_90 . repeat_region 20630 37421 . ? . description=dust scaffold_90 . exon 20301 20328 . + . ID=Phyra83514.2;Parent=Phyra83514;constitutive=1;ensembl_phase=2;rank=2 scaffold_90 . biological_region 42265 42268 0.999 + . logic_name=eponine scaffold_90 . biological_region 43126 43132 0.999 + . logic_name=eponine scaffold_90 . biological_region 43177 43182 0.999 + . logic_name=eponine scaffold_90 . biological_region 43200 43204 0.999 - . logic_name=eponine scaffold_90 . biological_region 43259 43262 0.999 - . logic_name=eponine scaffold_90 . biological_region 43342 43343 0.999 - . logic_name=eponine scaffold_90 . biological_region 43445 43452 0.999 + . logic_name=eponine scaffold_90 . biological_region 43469 43475 0.999 + . logic_name=eponine scaffold_90 . biological_region 43473 43474 0.999 - . logic_name=eponine scaffold_90 . biological_region 43490 43495 0.999 - . logic_name=eponine scaffold_90 . biological_region 43565 43572 0.999 - . logic_name=eponine scaffold_90 . biological_region 43603 43606 0.999 - . logic_name=eponine scaffold_90 . biological_region 43620 43626 0.999 + . logic_name=eponine scaffold_90 . biological_region 43682 43696 0.999 + . logic_name=eponine scaffold_90 . biological_region 43718 43719 0.999 + . logic_name=eponine scaffold_90 . biological_region 43724 43726 0.999 - . logic_name=eponine scaffold_90 . biological_region 43761 43765 0.999 - . logic_name=eponine scaffold_90 . biological_region 43806 43812 0.999 - . logic_name=eponine scaffold_90 . biological_region 44656 44659 0.999 - . logic_name=eponine scaffold_90 ensembl protein_coding_gene 39001 39981 . + . ID=Phyra72124;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_90000001;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 39001 39981 . + . ID=Phyra72124;Parent=Phyra72124;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 39001 39657 . + 0 ID=Phyra72124;Parent=Phyra72124;rank=1 scaffold_90 . exon 39001 39657 . + . ID=Phyra72124.1;Parent=Phyra72124;constitutive=1;rank=1 scaffold_90 . CDS 39772 39834 . + 0 ID=Phyra72124;Parent=Phyra72124;rank=2 scaffold_90 . exon 39772 39834 . + . ID=Phyra72124.2;Parent=Phyra72124;constitutive=1;rank=2 scaffold_90 . CDS 39880 39981 . + 0 ID=Phyra72124;Parent=Phyra72124;rank=3 scaffold_90 . exon 39880 39981 . + . ID=Phyra72124.3;Parent=Phyra72124;constitutive=1;rank=3 scaffold_90 ensembl protein_coding_gene 40152 42380 . - . ID=Phyra83516;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000008;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 40152 42380 . - . ID=Phyra83516;Parent=Phyra83516;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 40152 41561 . - 0 ID=Phyra83516;Parent=Phyra83516;rank=2 scaffold_90 . exon 40152 41561 . - . ID=Phyra83516.2;Parent=Phyra83516;constitutive=1;rank=2 scaffold_90 . CDS 41748 42380 . - 0 ID=Phyra83516;Parent=Phyra83516;rank=1 scaffold_90 . exon 41748 42380 . - . ID=Phyra83516.1;Parent=Phyra83516;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 43124 46414 . + . ID=Phyra83517;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000009;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 43124 46414 . + . ID=Phyra83517;Parent=Phyra83517;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 43124 46414 . + 0 ID=Phyra83517;Parent=Phyra83517;rank=1 scaffold_90 . exon 43124 46414 . + . ID=Phyra83517.1;Parent=Phyra83517;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 47066 47963 . - . ID=Phyra83518;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000010;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 47066 47963 . - . ID=Phyra83518;Parent=Phyra83518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 47066 47119 . - 0 ID=Phyra83518;Parent=Phyra83518;rank=4 scaffold_90 . exon 47066 47119 . - . ID=Phyra83518.4;Parent=Phyra83518;constitutive=1;rank=4 scaffold_90 . CDS 47161 47507 . - 0 ID=Phyra83518;Parent=Phyra83518;rank=3 scaffold_90 . exon 47161 47507 . - . ID=Phyra83518.3;Parent=Phyra83518;constitutive=1;ensembl_phase=1;rank=3 scaffold_90 . CDS 47573 47666 . - 0 ID=Phyra83518;Parent=Phyra83518;rank=2 scaffold_90 . exon 47573 47666 . - . ID=Phyra83518.2;Parent=Phyra83518;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_90 . CDS 47736 47963 . - 0 ID=Phyra83518;Parent=Phyra83518;rank=1 scaffold_90 . exon 47736 47963 . - . ID=Phyra83518.1;Parent=Phyra83518;constitutive=1;rank=1 scaffold_90 . repeat_region 48397 48423 . ? . description=trf scaffold_90 . repeat_region 51094 51127 . ? . description=trf scaffold_90 . repeat_region 51094 51127 . ? . description=dust scaffold_90 . repeat_region 51131 51180 . ? . description=dust scaffold_90 . repeat_region 54394 54413 . ? . description=trf scaffold_90 ensembl protein_coding_gene 55381 57894 . + . ID=Phyra72125;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_90000002;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 55381 57894 . + . ID=Phyra72125;Parent=Phyra72125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 55381 57894 . + 0 ID=Phyra72125;Parent=Phyra72125;rank=1 scaffold_90 . exon 55381 57894 . + . ID=Phyra72125.1;Parent=Phyra72125;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 48339 49973 . - . ID=Phyra83519;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000011;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 48339 49973 . - . ID=Phyra83519;Parent=Phyra83519;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 48339 49973 . - 0 ID=Phyra83519;Parent=Phyra83519;rank=1 scaffold_90 . exon 48339 49973 . - . ID=Phyra83519.1;Parent=Phyra83519;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 52116 53744 . + . ID=Phyra83520;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000012;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 52116 53744 . + . ID=Phyra83520;Parent=Phyra83520;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 52116 53744 . + 0 ID=Phyra83520;Parent=Phyra83520;rank=1 scaffold_90 . exon 52116 53744 . + . ID=Phyra83520.1;Parent=Phyra83520;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 54010 55278 . + . ID=Phyra83521;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000013;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 54010 55278 . + . ID=Phyra83521;Parent=Phyra83521;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 54010 55278 . + 0 ID=Phyra83521;Parent=Phyra83521;rank=1 scaffold_90 . exon 54010 55278 . + . ID=Phyra83521.1;Parent=Phyra83521;constitutive=1;rank=1 scaffold_90 . biological_region 61300 61300 0.999 - . logic_name=eponine scaffold_90 . biological_region 62383 62387 0.999 + . logic_name=eponine scaffold_90 . biological_region 62468 62470 0.999 - . logic_name=eponine scaffold_90 . biological_region 65576 65577 0.999 + . logic_name=eponine scaffold_90 . biological_region 66202 66204 0.999 - . logic_name=eponine scaffold_90 ensembl protein_coding_gene 62387 64291 . - . ID=Phyra83525;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000017;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 62387 64291 . - . ID=Phyra83525;Parent=Phyra83525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 62387 64291 . - 0 ID=Phyra83525;Parent=Phyra83525;rank=1 scaffold_90 . exon 62387 64291 . - . ID=Phyra83525.1;Parent=Phyra83525;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 64994 70591 . + . ID=Phyra83526;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000018;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 64994 70591 . + . ID=Phyra83526;Parent=Phyra83526;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 64994 65862 . + 0 ID=Phyra83526;Parent=Phyra83526;rank=1 scaffold_90 . exon 64994 65862 . + . ID=Phyra83526.1;Parent=Phyra83526;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 . CDS 65923 66945 . + 0 ID=Phyra83526;Parent=Phyra83526;rank=2 scaffold_90 . exon 65923 66945 . + . ID=Phyra83526.2;Parent=Phyra83526;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_90 . CDS 67291 67390 . + 0 ID=Phyra83526;Parent=Phyra83526;rank=3 scaffold_90 . exon 67291 67390 . + . ID=Phyra83526.3;Parent=Phyra83526;constitutive=1;ensembl_phase=2;rank=3 scaffold_90 . CDS 67516 68956 . + 0 ID=Phyra83526;Parent=Phyra83526;rank=4 scaffold_90 . CDS 69035 69238 . + 0 ID=Phyra83526;Parent=Phyra83526;rank=5 scaffold_90 . CDS 69683 69924 . + 0 ID=Phyra83526;Parent=Phyra83526;rank=6 scaffold_90 . CDS 69960 70017 . + 0 ID=Phyra83526;Parent=Phyra83526;rank=7 scaffold_90 . CDS 70049 70413 . + 0 ID=Phyra83526;Parent=Phyra83526;rank=8 scaffold_90 . CDS 70478 70591 . + 0 ID=Phyra83526;Parent=Phyra83526;rank=9 scaffold_90 ensembl protein_coding_gene 58028 62047 . - . ID=Phyra96628;biotype=protein_coding;external_name=C_scaffold_90000002;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 58028 62047 . - . ID=Phyra96628;Parent=Phyra96628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 58028 59529 . - 0 ID=Phyra96628;Parent=Phyra96628;rank=4 scaffold_90 . exon 58028 59529 . - . ID=Phyra96628.4;Parent=Phyra96628;constitutive=1;ensembl_phase=1;rank=4 scaffold_90 . CDS 59617 59747 . - 0 ID=Phyra96628;Parent=Phyra96628;rank=3 scaffold_90 . exon 59617 59747 . - . ID=Phyra96628.3;Parent=Phyra96628;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_90 . CDS 59841 60606 . - 0 ID=Phyra96628;Parent=Phyra96628;rank=2 scaffold_90 . exon 59841 60606 . - . ID=Phyra96628.2;Parent=Phyra96628;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_90 . CDS 60751 62047 . - 0 ID=Phyra96628;Parent=Phyra96628;rank=1 scaffold_90 . exon 60751 62047 . - . ID=Phyra96628.1;Parent=Phyra96628;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 . repeat_region 70437 70444 . ? . description=dust scaffold_90 . repeat_region 71727 71738 . ? . description=dust scaffold_90 . repeat_region 76425 76454 . ? . description=trf scaffold_90 . exon 67516 68956 . + . ID=Phyra83526.4;Parent=Phyra83526;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_90 . exon 69035 69238 . + . ID=Phyra83526.5;Parent=Phyra83526;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_90 . exon 69683 69924 . + . ID=Phyra83526.6;Parent=Phyra83526;constitutive=1;ensembl_phase=1;rank=6 scaffold_90 . exon 69960 70017 . + . ID=Phyra83526.7;Parent=Phyra83526;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_90 . exon 70049 70413 . + . ID=Phyra83526.8;Parent=Phyra83526;constitutive=1;ensembl_phase=1;rank=8 scaffold_90 . exon 70478 70591 . + . ID=Phyra83526.9;Parent=Phyra83526;constitutive=1;rank=9 scaffold_90 ensembl protein_coding_gene 72242 72571 . + . ID=Phyra83527;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000019;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 72242 72571 . + . ID=Phyra83527;Parent=Phyra83527;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 72242 72571 . + 0 ID=Phyra83527;Parent=Phyra83527;rank=1 scaffold_90 . exon 72242 72571 . + . ID=Phyra83527.1;Parent=Phyra83527;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 72817 74991 . - . ID=Phyra96629;biotype=protein_coding;external_name=C_scaffold_90000003;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 72817 74991 . - . ID=Phyra96629;Parent=Phyra96629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 72817 72902 . - 0 ID=Phyra96629;Parent=Phyra96629;rank=8 scaffold_90 . exon 72817 72902 . - . ID=Phyra96629.8;Parent=Phyra96629;constitutive=1;ensembl_phase=1;rank=8 scaffold_90 . CDS 72998 73130 . - 0 ID=Phyra96629;Parent=Phyra96629;rank=7 scaffold_90 . exon 72998 73130 . - . ID=Phyra96629.7;Parent=Phyra96629;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_90 . CDS 73212 73349 . - 0 ID=Phyra96629;Parent=Phyra96629;rank=6 scaffold_90 . exon 73212 73349 . - . ID=Phyra96629.6;Parent=Phyra96629;constitutive=1;rank=6 scaffold_90 . CDS 73425 73585 . - 0 ID=Phyra96629;Parent=Phyra96629;rank=5 scaffold_90 . exon 73425 73585 . - . ID=Phyra96629.5;Parent=Phyra96629;constitutive=1;ensembl_phase=1;rank=5 scaffold_90 . CDS 73983 74394 . - 0 ID=Phyra96629;Parent=Phyra96629;rank=4 scaffold_90 . exon 73983 74394 . - . ID=Phyra96629.4;Parent=Phyra96629;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_90 . CDS 74422 74460 . - 0 ID=Phyra96629;Parent=Phyra96629;rank=3 scaffold_90 . exon 74422 74460 . - . ID=Phyra96629.3;Parent=Phyra96629;constitutive=1;rank=3 scaffold_90 . CDS 74553 74840 . - 0 ID=Phyra96629;Parent=Phyra96629;rank=2 scaffold_90 . exon 74553 74840 . - . ID=Phyra96629.2;Parent=Phyra96629;constitutive=1;rank=2 scaffold_90 . CDS 74929 74991 . - 0 ID=Phyra96629;Parent=Phyra96629;rank=1 scaffold_90 . exon 74929 74991 . - . ID=Phyra96629.1;Parent=Phyra96629;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 75119 77100 . + . ID=Phyra96631;biotype=protein_coding;external_name=C_scaffold_90000005;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 75119 77100 . + . ID=Phyra96631;Parent=Phyra96631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 75119 75631 . + 0 ID=Phyra96631;Parent=Phyra96631;rank=1 scaffold_90 . exon 75119 75631 . + . ID=Phyra96631.1;Parent=Phyra96631;constitutive=1;rank=1 scaffold_90 . CDS 75659 75776 . + 0 ID=Phyra96631;Parent=Phyra96631;rank=2 scaffold_90 . exon 75659 75776 . + . ID=Phyra96631.2;Parent=Phyra96631;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_90 . CDS 76148 76182 . + 0 ID=Phyra96631;Parent=Phyra96631;rank=3 scaffold_90 . exon 76148 76182 . + . ID=Phyra96631.3;Parent=Phyra96631;constitutive=1;ensembl_phase=1;rank=3 scaffold_90 . CDS 76258 76323 . + 0 ID=Phyra96631;Parent=Phyra96631;rank=4 scaffold_90 . exon 76258 76323 . + . ID=Phyra96631.4;Parent=Phyra96631;constitutive=1;rank=4 scaffold_90 . CDS 76393 77100 . + 0 ID=Phyra96631;Parent=Phyra96631;rank=5 scaffold_90 . exon 76393 77100 . + . ID=Phyra96631.5;Parent=Phyra96631;constitutive=1;rank=5 scaffold_90 . biological_region 81537 81538 0.999 + . logic_name=eponine scaffold_90 . biological_region 81620 81622 0.999 - . logic_name=eponine scaffold_90 . biological_region 81947 81949 0.999 + . logic_name=eponine scaffold_90 . biological_region 82744 82750 0.999 + . logic_name=eponine scaffold_90 . biological_region 82753 82756 0.999 - . logic_name=eponine scaffold_90 . biological_region 83439 83442 0.999 - . logic_name=eponine scaffold_90 . biological_region 83564 83567 0.999 + . logic_name=eponine scaffold_90 . biological_region 83586 83590 0.999 + . logic_name=eponine scaffold_90 ensembl protein_coding_gene 81774 83216 . + . ID=Phyra83530;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000022;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 81774 83216 . + . ID=Phyra83530;Parent=Phyra83530;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 81774 83216 . + 0 ID=Phyra83530;Parent=Phyra83530;rank=1 scaffold_90 . exon 81774 83216 . + . ID=Phyra83530.1;Parent=Phyra83530;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 83343 84953 . + . ID=Phyra83531;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000023;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 83343 84953 . + . ID=Phyra83531;Parent=Phyra83531;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 83343 83437 . + 0 ID=Phyra83531;Parent=Phyra83531;rank=1 scaffold_90 . exon 83343 83437 . + . ID=Phyra83531.1;Parent=Phyra83531;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 . CDS 83502 83635 . + 0 ID=Phyra83531;Parent=Phyra83531;rank=2 scaffold_90 . exon 83502 83635 . + . ID=Phyra83531.2;Parent=Phyra83531;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_90 . CDS 83704 84953 . + 0 ID=Phyra83531;Parent=Phyra83531;rank=3 scaffold_90 . exon 83704 84953 . + . ID=Phyra83531.3;Parent=Phyra83531;constitutive=1;ensembl_phase=1;rank=3 scaffold_90 ensembl protein_coding_gene 85403 87901 . - . ID=Phyra83532;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000024;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 85403 87901 . - . ID=Phyra83532;Parent=Phyra83532;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 85403 85420 . - 0 ID=Phyra83532;Parent=Phyra83532;rank=5 scaffold_90 . exon 85403 85420 . - . ID=Phyra83532.5;Parent=Phyra83532;constitutive=1;rank=5 scaffold_90 . CDS 85467 85804 . - 0 ID=Phyra83532;Parent=Phyra83532;rank=4 scaffold_90 . exon 85467 85804 . - . ID=Phyra83532.4;Parent=Phyra83532;constitutive=1;ensembl_phase=1;rank=4 scaffold_90 . CDS 85875 85935 . - 0 ID=Phyra83532;Parent=Phyra83532;rank=3 scaffold_90 . exon 85875 85935 . - . ID=Phyra83532.3;Parent=Phyra83532;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_90 . CDS 86027 86143 . - 0 ID=Phyra83532;Parent=Phyra83532;rank=2 scaffold_90 . exon 86027 86143 . - . ID=Phyra83532.2;Parent=Phyra83532;constitutive=1;rank=2 scaffold_90 . CDS 86198 87901 . - 0 ID=Phyra83532;Parent=Phyra83532;rank=1 scaffold_90 . exon 86198 87901 . - . ID=Phyra83532.1;Parent=Phyra83532;constitutive=1;rank=1 scaffold_90 . repeat_region 92121 93319 . + . description=GypsyPi-1c_I-int scaffold_90 . repeat_region 92595 92767 . ? . description=dust scaffold_90 . repeat_region 96021 96040 . ? . description=dust scaffold_90 ensembl protein_coding_gene 88751 89143 . - . ID=Phyra83533;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000025;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 88751 89143 . - . ID=Phyra83533;Parent=Phyra83533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 88751 89143 . - 0 ID=Phyra83533;Parent=Phyra83533;rank=1 scaffold_90 . exon 88751 89143 . - . ID=Phyra83533.1;Parent=Phyra83533;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 89777 93044 . + . ID=Phyra83534;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000026;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 89777 93044 . + . ID=Phyra83534;Parent=Phyra83534;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 89777 89911 . + 0 ID=Phyra83534;Parent=Phyra83534;rank=1 scaffold_90 . exon 89777 89911 . + . ID=Phyra83534.1;Parent=Phyra83534;constitutive=1;rank=1 scaffold_90 . CDS 90013 90528 . + 0 ID=Phyra83534;Parent=Phyra83534;rank=2 scaffold_90 . exon 90013 90528 . + . ID=Phyra83534.2;Parent=Phyra83534;constitutive=1;rank=2 scaffold_90 . CDS 90651 90785 . + 0 ID=Phyra83534;Parent=Phyra83534;rank=3 scaffold_90 . exon 90651 90785 . + . ID=Phyra83534.3;Parent=Phyra83534;constitutive=1;rank=3 scaffold_90 . CDS 90861 92570 . + 0 ID=Phyra83534;Parent=Phyra83534;rank=4 scaffold_90 . exon 90861 92570 . + . ID=Phyra83534.4;Parent=Phyra83534;constitutive=1;rank=4 scaffold_90 . CDS 93006 93044 . + 0 ID=Phyra83534;Parent=Phyra83534;rank=5 scaffold_90 . exon 93006 93044 . + . ID=Phyra83534.5;Parent=Phyra83534;constitutive=1;rank=5 scaffold_90 . biological_region 98172 98172 0.999 - . logic_name=eponine scaffold_90 . repeat_region 101974 102253 . + . description=(TGAG)n scaffold_90 . repeat_region 102213 102253 . ? . description=trf scaffold_90 ensembl tRNA_gene 103619 103699 . + . ID=EPrPRAG00000000036;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_90 ensembl transcript 103619 103699 . + . ID=EPrPRAT00000000036;Parent=EPrPRAG00000000036;biotype=tRNA;logic_name=ncrna_eg scaffold_90 . exon 103619 103699 . + . ID=EPrPRAE00000000036;Parent=EPrPRAT00000000036;constitutive=1;rank=1 scaffold_90 . repeat_region 108246 108255 . ? . description=dust scaffold_90 . repeat_region 108563 108570 . ? . description=dust scaffold_90 . repeat_region 110923 110930 . ? . description=dust scaffold_90 ensembl protein_coding_gene 111273 114304 . - . ID=Phyra83535;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000027;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 111273 114304 . - . ID=Phyra83535;Parent=Phyra83535;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 111273 112565 . - 0 ID=Phyra83535;Parent=Phyra83535;rank=2 scaffold_90 . exon 111273 112565 . - . ID=Phyra83535.2;Parent=Phyra83535;constitutive=1;rank=2 scaffold_90 . CDS 112655 114304 . - 0 ID=Phyra83535;Parent=Phyra83535;rank=1 scaffold_90 . exon 112655 114304 . - . ID=Phyra83535.1;Parent=Phyra83535;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 115348 117716 . + . ID=Phyra83536;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000028;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 115348 117716 . + . ID=Phyra83536;Parent=Phyra83536;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 115348 117592 . + 0 ID=Phyra83536;Parent=Phyra83536;rank=1 scaffold_90 . exon 115348 117592 . + . ID=Phyra83536.1;Parent=Phyra83536;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 . CDS 117634 117716 . + 0 ID=Phyra83536;Parent=Phyra83536;rank=2 scaffold_90 . biological_region 117043 117050 0.999 + . logic_name=eponine scaffold_90 . biological_region 119182 119188 0.999 + . logic_name=eponine scaffold_90 . biological_region 119989 119990 0.999 + . logic_name=eponine scaffold_90 . biological_region 120066 120072 0.999 - . logic_name=eponine scaffold_90 . repeat_region 122279 122299 . ? . description=trf scaffold_90 . biological_region 123909 123909 0.999 - . logic_name=eponine scaffold_90 . biological_region 124169 124174 0.999 - . logic_name=eponine scaffold_90 . biological_region 124233 124233 0.999 - . logic_name=eponine scaffold_90 ensembl protein_coding_gene 121931 123988 . - . ID=Phyra72127;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_90000004;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 121931 123988 . - . ID=Phyra72127;Parent=Phyra72127;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 121931 123988 . - 0 ID=Phyra72127;Parent=Phyra72127;rank=1 scaffold_90 . exon 121931 123988 . - . ID=Phyra72127.1;Parent=Phyra72127;constitutive=1;rank=1 scaffold_90 . exon 117634 117716 . + . ID=Phyra83536.2;Parent=Phyra83536;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 ensembl protein_coding_gene 118903 120280 . - . ID=Phyra83537;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000029;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 118903 120280 . - . ID=Phyra83537;Parent=Phyra83537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 118903 118945 . - 0 ID=Phyra83537;Parent=Phyra83537;rank=4 scaffold_90 . exon 118903 118945 . - . ID=Phyra83537.4;Parent=Phyra83537;constitutive=1;ensembl_phase=2;rank=4 scaffold_90 . CDS 119014 119562 . - 0 ID=Phyra83537;Parent=Phyra83537;rank=3 scaffold_90 . exon 119014 119562 . - . ID=Phyra83537.3;Parent=Phyra83537;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_90 . CDS 119621 120126 . - 0 ID=Phyra83537;Parent=Phyra83537;rank=2 scaffold_90 . exon 119621 120126 . - . ID=Phyra83537.2;Parent=Phyra83537;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_90 . CDS 120185 120280 . - 0 ID=Phyra83537;Parent=Phyra83537;rank=1 scaffold_90 . exon 120185 120280 . - . ID=Phyra83537.1;Parent=Phyra83537;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 120453 121698 . + . ID=Phyra83538;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000030;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 120453 121698 . + . ID=Phyra83538;Parent=Phyra83538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 120453 121541 . + 0 ID=Phyra83538;Parent=Phyra83538;rank=1 scaffold_90 . exon 120453 121541 . + . ID=Phyra83538.1;Parent=Phyra83538;constitutive=1;rank=1 scaffold_90 . CDS 121612 121698 . + 0 ID=Phyra83538;Parent=Phyra83538;rank=2 scaffold_90 . exon 121612 121698 . + . ID=Phyra83538.2;Parent=Phyra83538;constitutive=1;rank=2 scaffold_90 . repeat_region 127437 127459 . ? . description=dust scaffold_90 . repeat_region 127735 127790 . ? . description=dust scaffold_90 . repeat_region 128142 128205 . ? . description=dust scaffold_90 . repeat_region 128834 129110 . ? . description=dust scaffold_90 . repeat_region 130217 138722 . ? . description=dust scaffold_90 ensembl protein_coding_gene 127003 127733 . - . ID=Phyra72128;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_90000005;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 127003 127733 . - . ID=Phyra72128;Parent=Phyra72128;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 127003 127167 . - 0 ID=Phyra72128;Parent=Phyra72128;rank=3 scaffold_90 . exon 127003 127167 . - . ID=Phyra72128.3;Parent=Phyra72128;constitutive=1;rank=3 scaffold_90 . CDS 127246 127411 . - 0 ID=Phyra72128;Parent=Phyra72128;rank=2 scaffold_90 . exon 127246 127411 . - . ID=Phyra72128.2;Parent=Phyra72128;constitutive=1;ensembl_phase=2;rank=2 scaffold_90 . CDS 127471 127733 . - 0 ID=Phyra72128;Parent=Phyra72128;rank=1 scaffold_90 . exon 127471 127733 . - . ID=Phyra72128.1;Parent=Phyra72128;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 ensembl protein_coding_gene 125478 126770 . - . ID=Phyra83540;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000032;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 125478 126770 . - . ID=Phyra83540;Parent=Phyra83540;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 125478 125942 . - 0 ID=Phyra83540;Parent=Phyra83540;rank=5 scaffold_90 . exon 125478 125942 . - . ID=Phyra83540.5;Parent=Phyra83540;constitutive=1;rank=5 scaffold_90 . CDS 126005 126121 . - 0 ID=Phyra83540;Parent=Phyra83540;rank=4 scaffold_90 . exon 126005 126121 . - . ID=Phyra83540.4;Parent=Phyra83540;constitutive=1;rank=4 scaffold_90 . CDS 126191 126324 . - 0 ID=Phyra83540;Parent=Phyra83540;rank=3 scaffold_90 . exon 126191 126324 . - . ID=Phyra83540.3;Parent=Phyra83540;constitutive=1;ensembl_phase=1;rank=3 scaffold_90 . CDS 126398 126544 . - 0 ID=Phyra83540;Parent=Phyra83540;rank=2 scaffold_90 . exon 126398 126544 . - . ID=Phyra83540.2;Parent=Phyra83540;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_90 . CDS 126608 126770 . - 0 ID=Phyra83540;Parent=Phyra83540;rank=1 scaffold_90 . exon 126608 126770 . - . ID=Phyra83540.1;Parent=Phyra83540;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 ensembl protein_coding_gene 128617 129956 . - . ID=Phyra83542;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000034;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 128617 129956 . - . ID=Phyra83542;Parent=Phyra83542;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 128617 128694 . - 0 ID=Phyra83542;Parent=Phyra83542;rank=2 scaffold_90 . exon 128617 128694 . - . ID=Phyra83542.2;Parent=Phyra83542;constitutive=1;rank=2 scaffold_90 . CDS 129138 129956 . - 0 ID=Phyra83542;Parent=Phyra83542;rank=1 scaffold_90 . exon 129138 129956 . - . ID=Phyra83542.1;Parent=Phyra83542;constitutive=1;rank=1 scaffold_90 . biological_region 142717 142723 0.999 - . logic_name=eponine scaffold_90 ensembl protein_coding_gene 142490 142804 . - . ID=Phyra54461;biotype=protein_coding;external_name=gwEuk.90.60.1;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 142490 142804 . - . ID=Phyra54461;Parent=Phyra54461;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 142490 142804 . - 0 ID=Phyra54461;Parent=Phyra54461;rank=1 scaffold_90 . exon 142490 142804 . - . ID=Phyra54461.1;Parent=Phyra54461;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 139767 140543 . + . ID=Phyra83543;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000035;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 139767 140543 . + . ID=Phyra83543;Parent=Phyra83543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 139767 140543 . + 0 ID=Phyra83543;Parent=Phyra83543;rank=1 scaffold_90 . exon 139767 140543 . + . ID=Phyra83543.1;Parent=Phyra83543;constitutive=1;rank=1 scaffold_90 . repeat_region 147906 147953 . ? . description=trf scaffold_90 ensembl pseudogene 150192 150395 . - . ID=Phyra54464;biotype=pseudogene;external_name=gwEuk.90.63.1;logic_name=jgi_phyra1 scaffold_90 ensembl pseudogene 150192 150395 . - . ID=Phyra54464;Parent=Phyra54464;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_90 . exon 150192 150395 . - . ID=Phyra54464.1;Parent=Phyra54464;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 145685 146524 . + . ID=Phyra83545;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000037;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 145685 146524 . + . ID=Phyra83545;Parent=Phyra83545;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 145685 146524 . + 0 ID=Phyra83545;Parent=Phyra83545;rank=1 scaffold_90 . exon 145685 146524 . + . ID=Phyra83545.1;Parent=Phyra83545;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 147348 148374 . - . ID=Phyra83546;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000038;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 147348 148374 . - . ID=Phyra83546;Parent=Phyra83546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 147348 147892 . - 0 ID=Phyra83546;Parent=Phyra83546;rank=2 scaffold_90 . exon 147348 147892 . - . ID=Phyra83546.2;Parent=Phyra83546;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 . CDS 147981 148374 . - 0 ID=Phyra83546;Parent=Phyra83546;rank=1 scaffold_90 . exon 147981 148374 . - . ID=Phyra83546.1;Parent=Phyra83546;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 ensembl protein_coding_gene 148638 149694 . + . ID=Phyra83547;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000039;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 148638 149694 . + . ID=Phyra83547;Parent=Phyra83547;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 148638 148669 . + 0 ID=Phyra83547;Parent=Phyra83547;rank=1 scaffold_90 . exon 148638 148669 . + . ID=Phyra83547.1;Parent=Phyra83547;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 . CDS 148842 148853 . + 0 ID=Phyra83547;Parent=Phyra83547;rank=2 scaffold_90 . exon 148842 148853 . + . ID=Phyra83547.2;Parent=Phyra83547;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_90 . CDS 148984 149239 . + 0 ID=Phyra83547;Parent=Phyra83547;rank=3 scaffold_90 . exon 148984 149239 . + . ID=Phyra83547.3;Parent=Phyra83547;constitutive=1;ensembl_phase=2;rank=3 scaffold_90 . CDS 149272 149628 . + 0 ID=Phyra83547;Parent=Phyra83547;rank=4 scaffold_90 . exon 149272 149628 . + . ID=Phyra83547.4;Parent=Phyra83547;constitutive=1;rank=4 scaffold_90 . CDS 149659 149694 . + 0 ID=Phyra83547;Parent=Phyra83547;rank=5 scaffold_90 . exon 149659 149694 . + . ID=Phyra83547.5;Parent=Phyra83547;constitutive=1;rank=5 scaffold_90 ensembl protein_coding_gene 152535 154361 . - . ID=Phyra83548;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000040;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 152535 154361 . - . ID=Phyra83548;Parent=Phyra83548;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 152535 154361 . - 0 ID=Phyra83548;Parent=Phyra83548;rank=1 scaffold_90 . exon 152535 154361 . - . ID=Phyra83548.1;Parent=Phyra83548;constitutive=1;rank=1 scaffold_90 . biological_region 154611 154615 0.999 + . logic_name=eponine scaffold_90 . biological_region 154815 154818 0.999 - . logic_name=eponine scaffold_90 . repeat_region 155459 156007 . ? . description=dust scaffold_90 . repeat_region 157872 172406 . ? . description=dust scaffold_90 ensembl protein_coding_gene 156182 157066 . + . ID=Phyra83549;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000041;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 156182 157066 . + . ID=Phyra83549;Parent=Phyra83549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 156182 157066 . + 0 ID=Phyra83549;Parent=Phyra83549;rank=1 scaffold_90 . exon 156182 157066 . + . ID=Phyra83549.1;Parent=Phyra83549;constitutive=1;rank=1 scaffold_90 . biological_region 174288 174293 0.999 + . logic_name=eponine scaffold_90 . repeat_region 178354 178371 . ? . description=dust scaffold_90 ensembl protein_coding_gene 173261 174145 . - . ID=Phyra83550;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000042;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 173261 174145 . - . ID=Phyra83550;Parent=Phyra83550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 173261 174145 . - 0 ID=Phyra83550;Parent=Phyra83550;rank=1 scaffold_90 . exon 173261 174145 . - . ID=Phyra83550.1;Parent=Phyra83550;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 175341 176021 . - . ID=Phyra83551;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000043;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 175341 176021 . - . ID=Phyra83551;Parent=Phyra83551;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 175341 175427 . - 0 ID=Phyra83551;Parent=Phyra83551;rank=5 scaffold_90 . exon 175341 175427 . - . ID=Phyra83551.5;Parent=Phyra83551;constitutive=1;rank=5 scaffold_90 . CDS 175471 175665 . - 0 ID=Phyra83551;Parent=Phyra83551;rank=4 scaffold_90 . exon 175471 175665 . - . ID=Phyra83551.4;Parent=Phyra83551;constitutive=1;rank=4 scaffold_90 . CDS 175791 175841 . - 0 ID=Phyra83551;Parent=Phyra83551;rank=3 scaffold_90 . exon 175791 175841 . - . ID=Phyra83551.3;Parent=Phyra83551;constitutive=1;rank=3 scaffold_90 . CDS 175903 175925 . - 0 ID=Phyra83551;Parent=Phyra83551;rank=2 scaffold_90 . exon 175903 175925 . - . ID=Phyra83551.2;Parent=Phyra83551;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 . CDS 175964 176021 . - 0 ID=Phyra83551;Parent=Phyra83551;rank=1 scaffold_90 . exon 175964 176021 . - . ID=Phyra83551.1;Parent=Phyra83551;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 ensembl protein_coding_gene 177725 178731 . + . ID=Phyra83552;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000044;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 177725 178731 . + . ID=Phyra83552;Parent=Phyra83552;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 177725 178073 . + 0 ID=Phyra83552;Parent=Phyra83552;rank=1 scaffold_90 . exon 177725 178073 . + . ID=Phyra83552.1;Parent=Phyra83552;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 . CDS 178138 178311 . + 0 ID=Phyra83552;Parent=Phyra83552;rank=2 scaffold_90 . exon 178138 178311 . + . ID=Phyra83552.2;Parent=Phyra83552;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_90 . CDS 178395 178565 . + 0 ID=Phyra83552;Parent=Phyra83552;rank=3 scaffold_90 . exon 178395 178565 . + . ID=Phyra83552.3;Parent=Phyra83552;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_90 . CDS 178706 178731 . + 0 ID=Phyra83552;Parent=Phyra83552;rank=4 scaffold_90 . exon 178706 178731 . + . ID=Phyra83552.4;Parent=Phyra83552;constitutive=1;ensembl_phase=1;rank=4 scaffold_90 ensembl protein_coding_gene 180024 180606 . - . ID=Phyra83553;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000045;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 180024 180606 . - . ID=Phyra83553;Parent=Phyra83553;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 180024 180089 . - 0 ID=Phyra83553;Parent=Phyra83553;rank=3 scaffold_90 . exon 180024 180089 . - . ID=Phyra83553.3;Parent=Phyra83553;constitutive=1;rank=3 scaffold_90 . CDS 180150 180476 . - 0 ID=Phyra83553;Parent=Phyra83553;rank=2 scaffold_90 . exon 180150 180476 . - . ID=Phyra83553.2;Parent=Phyra83553;constitutive=1;rank=2 scaffold_90 . CDS 180541 180606 . - 0 ID=Phyra83553;Parent=Phyra83553;rank=1 scaffold_90 . exon 180541 180606 . - . ID=Phyra83553.1;Parent=Phyra83553;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 181317 183257 . - . ID=Phyra83554;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000046;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 181317 183257 . - . ID=Phyra83554;Parent=Phyra83554;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 181317 181327 . - 0 ID=Phyra83554;Parent=Phyra83554;rank=4 scaffold_90 . exon 181317 181327 . - . ID=Phyra83554.4;Parent=Phyra83554;constitutive=1;ensembl_phase=1;rank=4 scaffold_90 . CDS 181492 182681 . - 0 ID=Phyra83554;Parent=Phyra83554;rank=3 scaffold_90 . exon 181492 182681 . - . ID=Phyra83554.3;Parent=Phyra83554;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_90 . CDS 182838 182851 . - 0 ID=Phyra83554;Parent=Phyra83554;rank=2 scaffold_90 . CDS 183084 183257 . - 0 ID=Phyra83554;Parent=Phyra83554;rank=1 scaffold_90 ensembl protein_coding_gene 178854 179713 . + . ID=Phyra96637;biotype=protein_coding;external_name=C_scaffold_90000011;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 178854 179713 . + . ID=Phyra96637;Parent=Phyra96637;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 178854 178918 . + 0 ID=Phyra96637;Parent=Phyra96637;rank=1 scaffold_90 . exon 178854 178918 . + . ID=Phyra96637.1;Parent=Phyra96637;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 . CDS 178982 179163 . + 0 ID=Phyra96637;Parent=Phyra96637;rank=2 scaffold_90 . exon 178982 179163 . + . ID=Phyra96637.2;Parent=Phyra96637;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_90 . CDS 179413 179489 . + 0 ID=Phyra96637;Parent=Phyra96637;rank=3 scaffold_90 . exon 179413 179489 . + . ID=Phyra96637.3;Parent=Phyra96637;constitutive=1;ensembl_phase=1;rank=3 scaffold_90 . CDS 179558 179713 . + 0 ID=Phyra96637;Parent=Phyra96637;rank=4 scaffold_90 . exon 179558 179713 . + . ID=Phyra96637.4;Parent=Phyra96637;constitutive=1;rank=4 scaffold_90 . repeat_region 186535 186957 . ? . description=trf scaffold_90 . repeat_region 186616 187331 . ? . description=trf scaffold_90 . repeat_region 186820 187331 . ? . description=trf scaffold_90 . repeat_region 186958 187052 . ? . description=trf scaffold_90 . repeat_region 187054 187148 . ? . description=trf scaffold_90 . repeat_region 187150 187244 . ? . description=trf scaffold_90 . repeat_region 187246 187330 . ? . description=trf scaffold_90 . repeat_region 190713 190800 . - . description=GypsyPi-1c_I-int scaffold_90 . repeat_region 190968 191142 . - . description=GypsyPi-1c_I-int scaffold_90 . repeat_region 191377 191601 . - . description=GypsyPi-1c_I-int scaffold_90 ensembl protein_coding_gene 186407 187329 . + . ID=Phyra54469;biotype=protein_coding;external_name=gwEuk.90.68.1;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 186407 187329 . + . ID=Phyra54469;Parent=Phyra54469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 186407 186528 . + 0 ID=Phyra54469;Parent=Phyra54469;rank=1 scaffold_90 . exon 186407 186528 . + . ID=Phyra54469.1;Parent=Phyra54469;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 . CDS 186612 186717 . + 0 ID=Phyra54469;Parent=Phyra54469;rank=2 scaffold_90 . exon 186612 186717 . + . ID=Phyra54469.2;Parent=Phyra54469;constitutive=1;ensembl_phase=2;rank=2 scaffold_90 . CDS 186814 187329 . + 0 ID=Phyra54469;Parent=Phyra54469;rank=3 scaffold_90 . exon 186814 187329 . + . ID=Phyra54469.3;Parent=Phyra54469;constitutive=1;rank=3 scaffold_90 . exon 182838 182851 . - . ID=Phyra83554.2;Parent=Phyra83554;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_90 . exon 183084 183257 . - . ID=Phyra83554.1;Parent=Phyra83554;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 184688 186264 . + . ID=Phyra83555;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000047;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 184688 186264 . + . ID=Phyra83555;Parent=Phyra83555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 184688 186215 . + 0 ID=Phyra83555;Parent=Phyra83555;rank=1 scaffold_90 . exon 184688 186215 . + . ID=Phyra83555.1;Parent=Phyra83555;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 . CDS 186242 186264 . + 0 ID=Phyra83555;Parent=Phyra83555;rank=2 scaffold_90 . exon 186242 186264 . + . ID=Phyra83555.2;Parent=Phyra83555;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 ensembl protein_coding_gene 189997 190317 . - . ID=Phyra83556;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000048;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 189997 190317 . - . ID=Phyra83556;Parent=Phyra83556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 189997 190317 . - 0 ID=Phyra83556;Parent=Phyra83556;rank=1 scaffold_90 . exon 189997 190317 . - . ID=Phyra83556.1;Parent=Phyra83556;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 191097 191725 . + . ID=Phyra83557;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_90000049;logic_name=jgi_phyra1 scaffold_90 ensembl transcript 191097 191725 . + . ID=Phyra83557;Parent=Phyra83557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_90 . CDS 191097 191127 . + 0 ID=Phyra83557;Parent=Phyra83557;rank=1 scaffold_90 . exon 191097 191127 . + . ID=Phyra83557.1;Parent=Phyra83557;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 . CDS 191196 191725 . + 0 ID=Phyra83557;Parent=Phyra83557;rank=2 scaffold_90 . exon 191196 191725 . + . ID=Phyra83557.2;Parent=Phyra83557;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_88 1 194299 scaffold_88 . biological_region 1450 1453 0.999 + . logic_name=eponine scaffold_88 . repeat_region 2876 2918 . ? . description=trf scaffold_88 . biological_region 3562 3562 0.999 - . logic_name=eponine scaffold_88 . biological_region 3598 3599 0.999 + . logic_name=eponine scaffold_88 . biological_region 3712 3714 0.999 - . logic_name=eponine scaffold_88 . repeat_region 3999 4015 . ? . description=dust scaffold_88 . repeat_region 4310 4317 . ? . description=dust scaffold_88 . repeat_region 4911 4960 . ? . description=dust scaffold_88 . repeat_region 6240 7170 . ? . description=dust scaffold_88 . repeat_region 8055 8063 . ? . description=dust scaffold_88 . repeat_region 9398 9425 . ? . description=trf scaffold_88 . repeat_region 9581 9640 . ? . description=trf scaffold_88 . repeat_region 9638 9667 . ? . description=trf scaffold_88 . biological_region 21641 21647 0.999 - . logic_name=eponine scaffold_88 . biological_region 21826 21831 0.999 - . logic_name=eponine scaffold_88 . repeat_region 22751 28026 . ? . description=dust scaffold_88 . repeat_region 28648 28864 . - . description=GypsyPi-1c_I-int scaffold_88 . biological_region 29119 29123 0.999 - . logic_name=eponine scaffold_88 ensembl protein_coding_gene 21167 22384 . + . ID=Phyra83411;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000001;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 21167 22384 . + . ID=Phyra83411;Parent=Phyra83411;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 21167 22041 . + 0 ID=Phyra83411;Parent=Phyra83411;rank=1 scaffold_88 . exon 21167 22041 . + . ID=Phyra83411.1;Parent=Phyra83411;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . CDS 22077 22114 . + 0 ID=Phyra83411;Parent=Phyra83411;rank=2 scaffold_88 . exon 22077 22114 . + . ID=Phyra83411.2;Parent=Phyra83411;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 22139 22272 . + 0 ID=Phyra83411;Parent=Phyra83411;rank=3 scaffold_88 . exon 22139 22272 . + . ID=Phyra83411.3;Parent=Phyra83411;constitutive=1;ensembl_phase=1;rank=3 scaffold_88 . CDS 22373 22384 . + 0 ID=Phyra83411;Parent=Phyra83411;rank=4 scaffold_88 . exon 22373 22384 . + . ID=Phyra83411.4;Parent=Phyra83411;constitutive=1;rank=4 scaffold_88 ensembl protein_coding_gene 28412 29273 . - . ID=Phyra83412;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000002;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 28412 29273 . - . ID=Phyra83412;Parent=Phyra83412;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 28412 28468 . - 0 ID=Phyra83412;Parent=Phyra83412;rank=3 scaffold_88 . exon 28412 28468 . - . ID=Phyra83412.3;Parent=Phyra83412;constitutive=1;rank=3 scaffold_88 . CDS 28521 29036 . - 0 ID=Phyra83412;Parent=Phyra83412;rank=2 scaffold_88 . exon 28521 29036 . - . ID=Phyra83412.2;Parent=Phyra83412;constitutive=1;rank=2 scaffold_88 . CDS 29139 29273 . - 0 ID=Phyra83412;Parent=Phyra83412;rank=1 scaffold_88 . exon 29139 29273 . - . ID=Phyra83412.1;Parent=Phyra83412;constitutive=1;rank=1 scaffold_88 . repeat_region 31695 31889 . ? . description=trf scaffold_88 . repeat_region 32824 32990 . - . description=Gypsy-2-LTR_PI scaffold_88 . repeat_region 33309 33329 . ? . description=trf scaffold_88 . repeat_region 33601 35632 . - . description=Gypsy-2-I_PI-int scaffold_88 . repeat_region 36518 37576 . - . description=Gypsy-2-I_PI-int scaffold_88 . repeat_region 37596 37706 . - . description=Gypsy-2-LTR_PI scaffold_88 . repeat_region 38191 39202 . - . description=Gypsy-2-I_PI-int scaffold_88 ensembl protein_coding_gene 35281 35634 . - . ID=Phyra54040;biotype=protein_coding;external_name=gwEuk.88.1.1;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 35281 35634 . - . ID=Phyra54040;Parent=Phyra54040;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 35281 35634 . - 0 ID=Phyra54040;Parent=Phyra54040;rank=1 scaffold_88 . exon 35281 35634 . - . ID=Phyra54040.1;Parent=Phyra54040;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 36722 37485 . - . ID=Phyra83413;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000003;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 36722 37485 . - . ID=Phyra83413;Parent=Phyra83413;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 36722 36886 . - 0 ID=Phyra83413;Parent=Phyra83413;rank=2 scaffold_88 . exon 36722 36886 . - . ID=Phyra83413.2;Parent=Phyra83413;constitutive=1;rank=2 scaffold_88 . CDS 36985 37485 . - 0 ID=Phyra83413;Parent=Phyra83413;rank=1 scaffold_88 . exon 36985 37485 . - . ID=Phyra83413.1;Parent=Phyra83413;constitutive=1;rank=1 scaffold_88 . repeat_region 39204 46938 . ? . description=dust scaffold_88 ensembl protein_coding_gene 47554 48438 . + . ID=Phyra83414;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000004;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 47554 48438 . + . ID=Phyra83414;Parent=Phyra83414;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 47554 48438 . + 0 ID=Phyra83414;Parent=Phyra83414;rank=1 scaffold_88 . exon 47554 48438 . + . ID=Phyra83414.1;Parent=Phyra83414;constitutive=1;rank=1 scaffold_88 . repeat_region 49030 49050 . ? . description=trf scaffold_88 . repeat_region 49924 49944 . ? . description=trf scaffold_88 . biological_region 57381 57382 0.999 + . logic_name=eponine scaffold_88 ensembl protein_coding_gene 50539 51816 . - . ID=Phyra83415;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000005;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 50539 51816 . - . ID=Phyra83415;Parent=Phyra83415;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 50539 51816 . - 0 ID=Phyra83415;Parent=Phyra83415;rank=1 scaffold_88 . exon 50539 51816 . - . ID=Phyra83415.1;Parent=Phyra83415;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 56664 57539 . - . ID=Phyra83416;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000006;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 56664 57539 . - . ID=Phyra83416;Parent=Phyra83416;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 56664 57539 . - 0 ID=Phyra83416;Parent=Phyra83416;rank=1 scaffold_88 . exon 56664 57539 . - . ID=Phyra83416.1;Parent=Phyra83416;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 57900 58316 . + . ID=Phyra83417;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000007;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 57900 58316 . + . ID=Phyra83417;Parent=Phyra83417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 57900 58316 . + 0 ID=Phyra83417;Parent=Phyra83417;rank=1 scaffold_88 . exon 57900 58316 . + . ID=Phyra83417.1;Parent=Phyra83417;constitutive=1;rank=1 scaffold_88 . repeat_region 59035 59979 . ? . description=dust scaffold_88 . repeat_region 60928 61739 . ? . description=dust scaffold_88 . repeat_region 62698 62714 . ? . description=dust scaffold_88 ensembl protein_coding_gene 65085 65960 . - . ID=Phyra83418;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000008;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 65085 65960 . - . ID=Phyra83418;Parent=Phyra83418;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 65085 65960 . - 0 ID=Phyra83418;Parent=Phyra83418;rank=1 scaffold_88 . exon 65085 65960 . - . ID=Phyra83418.1;Parent=Phyra83418;constitutive=1;rank=1 scaffold_88 . biological_region 68473 68478 0.999 + . logic_name=eponine scaffold_88 . biological_region 68575 68580 0.999 - . logic_name=eponine scaffold_88 . biological_region 68612 68616 0.999 - . logic_name=eponine scaffold_88 . biological_region 68618 68618 0.999 + . logic_name=eponine scaffold_88 . biological_region 68722 68723 0.999 - . logic_name=eponine scaffold_88 . biological_region 68865 68868 0.999 - . logic_name=eponine scaffold_88 . repeat_region 73490 77310 . ? . description=trf scaffold_88 . repeat_region 75461 77222 . ? . description=trf scaffold_88 ensembl protein_coding_gene 68448 71111 . + . ID=Phyra83419;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000009;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 68448 71111 . + . ID=Phyra83419;Parent=Phyra83419;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 68448 71111 . + 0 ID=Phyra83419;Parent=Phyra83419;rank=1 scaffold_88 . exon 68448 71111 . + . ID=Phyra83419.1;Parent=Phyra83419;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 71416 77604 . - . ID=Phyra83420;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000010;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 71416 77604 . - . ID=Phyra83420;Parent=Phyra83420;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 71416 71854 . - 0 ID=Phyra83420;Parent=Phyra83420;rank=2 scaffold_88 . exon 71416 71854 . - . ID=Phyra83420.2;Parent=Phyra83420;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 72002 77604 . - 0 ID=Phyra83420;Parent=Phyra83420;rank=1 scaffold_88 . exon 72002 77604 . - . ID=Phyra83420.1;Parent=Phyra83420;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . repeat_region 77998 78005 . ? . description=dust scaffold_88 . repeat_region 78033 78041 . ? . description=dust scaffold_88 . repeat_region 81639 82519 . ? . description=dust scaffold_88 ensembl protein_coding_gene 79708 82825 . + . ID=Phyra96603;biotype=protein_coding;external_name=C_scaffold_88000002;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 79708 82825 . + . ID=Phyra96603;Parent=Phyra96603;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 79708 79955 . + 0 ID=Phyra96603;Parent=Phyra96603;rank=1 scaffold_88 . exon 79708 79955 . + . ID=Phyra96603.1;Parent=Phyra96603;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . CDS 79992 80170 . + 0 ID=Phyra96603;Parent=Phyra96603;rank=2 scaffold_88 . exon 79992 80170 . + . ID=Phyra96603.2;Parent=Phyra96603;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 80598 81232 . + 0 ID=Phyra96603;Parent=Phyra96603;rank=3 scaffold_88 . exon 80598 81232 . + . ID=Phyra96603.3;Parent=Phyra96603;constitutive=1;ensembl_phase=1;rank=3 scaffold_88 . CDS 82559 82825 . + 0 ID=Phyra96603;Parent=Phyra96603;rank=4 scaffold_88 . exon 82559 82825 . + . ID=Phyra96603.4;Parent=Phyra96603;constitutive=1;rank=4 scaffold_88 ensembl protein_coding_gene 83615 84354 . + . ID=Phyra96604;biotype=protein_coding;external_name=C_scaffold_88000003;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 83615 84354 . + . ID=Phyra96604;Parent=Phyra96604;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 83615 83715 . + 0 ID=Phyra96604;Parent=Phyra96604;rank=1 scaffold_88 . exon 83615 83715 . + . ID=Phyra96604.1;Parent=Phyra96604;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . CDS 83779 84007 . + 0 ID=Phyra96604;Parent=Phyra96604;rank=2 scaffold_88 . exon 83779 84007 . + . ID=Phyra96604.2;Parent=Phyra96604;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 84091 84354 . + 0 ID=Phyra96604;Parent=Phyra96604;rank=3 scaffold_88 . exon 84091 84354 . + . ID=Phyra96604.3;Parent=Phyra96604;constitutive=1;rank=3 scaffold_88 ensembl protein_coding_gene 84617 89152 . - . ID=Phyra96605;biotype=protein_coding;external_name=C_scaffold_88000004;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 84617 89152 . - . ID=Phyra96605;Parent=Phyra96605;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 84617 84849 . - 0 ID=Phyra96605;Parent=Phyra96605;rank=8 scaffold_88 . exon 84617 84849 . - . ID=Phyra96605.8;Parent=Phyra96605;constitutive=1;ensembl_phase=1;rank=8 scaffold_88 . CDS 84901 85236 . - 0 ID=Phyra96605;Parent=Phyra96605;rank=7 scaffold_88 . exon 84901 85236 . - . ID=Phyra96605.7;Parent=Phyra96605;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_88 . CDS 85273 85462 . - 0 ID=Phyra96605;Parent=Phyra96605;rank=6 scaffold_88 . exon 85273 85462 . - . ID=Phyra96605.6;Parent=Phyra96605;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_88 . CDS 85505 85939 . - 0 ID=Phyra96605;Parent=Phyra96605;rank=5 scaffold_88 . exon 85505 85939 . - . ID=Phyra96605.5;Parent=Phyra96605;constitutive=1;rank=5 scaffold_88 . CDS 86009 87381 . - 0 ID=Phyra96605;Parent=Phyra96605;rank=4 scaffold_88 . exon 86009 87381 . - . ID=Phyra96605.4;Parent=Phyra96605;constitutive=1;ensembl_phase=1;rank=4 scaffold_88 . CDS 87403 87521 . - 0 ID=Phyra96605;Parent=Phyra96605;rank=3 scaffold_88 . exon 87403 87521 . - . ID=Phyra96605.3;Parent=Phyra96605;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_88 . CDS 87612 88627 . - 0 ID=Phyra96605;Parent=Phyra96605;rank=2 scaffold_88 . CDS 88661 89152 . - 0 ID=Phyra96605;Parent=Phyra96605;rank=1 scaffold_88 . biological_region 89018 89023 0.999 + . logic_name=eponine scaffold_88 . biological_region 91241 91245 0.999 + . logic_name=eponine scaffold_88 . biological_region 91375 91377 0.999 - . logic_name=eponine scaffold_88 . biological_region 91519 91521 0.999 - . logic_name=eponine scaffold_88 . biological_region 91598 91601 0.999 + . logic_name=eponine scaffold_88 . biological_region 92791 92793 0.999 - . logic_name=eponine scaffold_88 ensembl protein_coding_gene 89776 90565 . - . ID=Phyra54050;biotype=protein_coding;external_name=gwEuk.88.11.1;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 89776 90565 . - . ID=Phyra54050;Parent=Phyra54050;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 89776 90096 . - 0 ID=Phyra54050;Parent=Phyra54050;rank=3 scaffold_88 . exon 89776 90096 . - . ID=Phyra54050.3;Parent=Phyra54050;constitutive=1;rank=3 scaffold_88 . CDS 90182 90371 . - 0 ID=Phyra54050;Parent=Phyra54050;rank=2 scaffold_88 . exon 90182 90371 . - . ID=Phyra54050.2;Parent=Phyra54050;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 90450 90565 . - 0 ID=Phyra54050;Parent=Phyra54050;rank=1 scaffold_88 . exon 90450 90565 . - . ID=Phyra54050.1;Parent=Phyra54050;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 ensembl protein_coding_gene 91889 93229 . + . ID=Phyra72114;biotype=protein_coding;description=Beta-tubulin [Source:UniProtKB/TrEMBL%3BAcc:A7XKZ9];external_name=BTUB;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 91889 93229 . + . ID=Phyra72114;Parent=Phyra72114;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 91889 93229 . + 0 ID=Phyra72114;Parent=Phyra72114;rank=1 scaffold_88 . exon 91889 93229 . + . ID=Phyra72114.1;Parent=Phyra72114;constitutive=1;rank=1 scaffold_88 . exon 87612 88627 . - . ID=Phyra96605.2;Parent=Phyra96605;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_88 . exon 88661 89152 . - . ID=Phyra96605.1;Parent=Phyra96605;constitutive=1;rank=1 scaffold_88 . repeat_region 99230 99238 . ? . description=dust scaffold_88 . repeat_region 99909 99960 . ? . description=trf scaffold_88 ensembl protein_coding_gene 99328 100107 . + . ID=Phyra83427;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000017;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 99328 100107 . + . ID=Phyra83427;Parent=Phyra83427;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 99328 99368 . + 0 ID=Phyra83427;Parent=Phyra83427;rank=1 scaffold_88 . exon 99328 99368 . + . ID=Phyra83427.1;Parent=Phyra83427;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . CDS 99504 100107 . + 0 ID=Phyra83427;Parent=Phyra83427;rank=2 scaffold_88 . exon 99504 100107 . + . ID=Phyra83427.2;Parent=Phyra83427;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 . biological_region 111771 111775 0.999 + . logic_name=eponine scaffold_88 . biological_region 111792 111798 0.999 + . logic_name=eponine scaffold_88 . biological_region 111883 111883 0.999 - . logic_name=eponine scaffold_88 . biological_region 112269 112270 0.999 + . logic_name=eponine scaffold_88 . biological_region 112341 112342 0.999 + . logic_name=eponine scaffold_88 . biological_region 112386 112393 0.999 - . logic_name=eponine scaffold_88 ensembl protein_coding_gene 109137 111335 . + . ID=Phyra54065;biotype=protein_coding;external_name=gwEuk.88.26.1;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 109137 111335 . + . ID=Phyra54065;Parent=Phyra54065;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 109137 110073 . + 0 ID=Phyra54065;Parent=Phyra54065;rank=1 scaffold_88 . exon 109137 110073 . + . ID=Phyra54065.1;Parent=Phyra54065;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_88 . CDS 110395 110698 . + 0 ID=Phyra54065;Parent=Phyra54065;rank=2 scaffold_88 . exon 110395 110698 . + . ID=Phyra54065.2;Parent=Phyra54065;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_88 . CDS 110846 111335 . + 0 ID=Phyra54065;Parent=Phyra54065;rank=3 scaffold_88 . exon 110846 111335 . + . ID=Phyra54065.3;Parent=Phyra54065;constitutive=1;ensembl_phase=2;rank=3 scaffold_88 ensembl protein_coding_gene 111697 113148 . + . ID=Phyra54068;biotype=protein_coding;external_name=gwEuk.88.29.1;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 111697 113148 . + . ID=Phyra54068;Parent=Phyra54068;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 111697 113148 . + 0 ID=Phyra54068;Parent=Phyra54068;rank=1 scaffold_88 . exon 111697 113148 . + . ID=Phyra54068.1;Parent=Phyra54068;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 115581 116618 . + . ID=Phyra72116;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_88000004;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 115581 116618 . + . ID=Phyra72116;Parent=Phyra72116;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 115581 116618 . + 0 ID=Phyra72116;Parent=Phyra72116;rank=1 scaffold_88 . exon 115581 116618 . + . ID=Phyra72116.1;Parent=Phyra72116;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 113358 114899 . - . ID=Phyra83430;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000020;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 113358 114899 . - . ID=Phyra83430;Parent=Phyra83430;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 113358 113438 . - 0 ID=Phyra83430;Parent=Phyra83430;rank=6 scaffold_88 . exon 113358 113438 . - . ID=Phyra83430.6;Parent=Phyra83430;constitutive=1;rank=6 scaffold_88 . CDS 113508 113931 . - 0 ID=Phyra83430;Parent=Phyra83430;rank=5 scaffold_88 . exon 113508 113931 . - . ID=Phyra83430.5;Parent=Phyra83430;constitutive=1;ensembl_phase=2;rank=5 scaffold_88 . CDS 114003 114286 . - 0 ID=Phyra83430;Parent=Phyra83430;rank=4 scaffold_88 . exon 114003 114286 . - . ID=Phyra83430.4;Parent=Phyra83430;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_88 . CDS 114351 114619 . - 0 ID=Phyra83430;Parent=Phyra83430;rank=3 scaffold_88 . exon 114351 114619 . - . ID=Phyra83430.3;Parent=Phyra83430;constitutive=1;ensembl_phase=1;rank=3 scaffold_88 . CDS 114687 114748 . - 0 ID=Phyra83430;Parent=Phyra83430;rank=2 scaffold_88 . exon 114687 114748 . - . ID=Phyra83430.2;Parent=Phyra83430;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 114808 114899 . - 0 ID=Phyra83430;Parent=Phyra83430;rank=1 scaffold_88 . exon 114808 114899 . - . ID=Phyra83430.1;Parent=Phyra83430;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 ensembl protein_coding_gene 116828 117955 . - . ID=Phyra83432;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000022;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 116828 117955 . - . ID=Phyra83432;Parent=Phyra83432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 116828 117011 . - 0 ID=Phyra83432;Parent=Phyra83432;rank=5 scaffold_88 . exon 116828 117011 . - . ID=Phyra83432.5;Parent=Phyra83432;constitutive=1;ensembl_phase=2;rank=5 scaffold_88 . CDS 117085 117307 . - 0 ID=Phyra83432;Parent=Phyra83432;rank=4 scaffold_88 . exon 117085 117307 . - . ID=Phyra83432.4;Parent=Phyra83432;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_88 . CDS 117392 117510 . - 0 ID=Phyra83432;Parent=Phyra83432;rank=3 scaffold_88 . exon 117392 117510 . - . ID=Phyra83432.3;Parent=Phyra83432;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_88 . CDS 117569 117762 . - 0 ID=Phyra83432;Parent=Phyra83432;rank=2 scaffold_88 . exon 117569 117762 . - . ID=Phyra83432.2;Parent=Phyra83432;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_88 . CDS 117908 117955 . - 0 ID=Phyra83432;Parent=Phyra83432;rank=1 scaffold_88 . exon 117908 117955 . - . ID=Phyra83432.1;Parent=Phyra83432;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 118467 120152 . - . ID=Phyra83433;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000023;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 118467 120152 . - . ID=Phyra83433;Parent=Phyra83433;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 118467 120152 . - 0 ID=Phyra83433;Parent=Phyra83433;rank=1 scaffold_88 . exon 118467 120152 . - . ID=Phyra83433.1;Parent=Phyra83433;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 121514 126258 . + . ID=Phyra83434;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000024;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 121514 126258 . + . ID=Phyra83434;Parent=Phyra83434;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 121514 121648 . + 0 ID=Phyra83434;Parent=Phyra83434;rank=1 scaffold_88 . exon 121514 121648 . + . ID=Phyra83434.1;Parent=Phyra83434;constitutive=1;rank=1 scaffold_88 . CDS 121721 122239 . + 0 ID=Phyra83434;Parent=Phyra83434;rank=2 scaffold_88 . exon 121721 122239 . + . ID=Phyra83434.2;Parent=Phyra83434;constitutive=1;rank=2 scaffold_88 . CDS 122314 123382 . + 0 ID=Phyra83434;Parent=Phyra83434;rank=3 scaffold_88 . exon 122314 123382 . + . ID=Phyra83434.3;Parent=Phyra83434;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_88 . CDS 123416 124023 . + 0 ID=Phyra83434;Parent=Phyra83434;rank=4 scaffold_88 . exon 123416 124023 . + . ID=Phyra83434.4;Parent=Phyra83434;constitutive=1;ensembl_phase=1;rank=4 scaffold_88 . CDS 124091 124225 . + 0 ID=Phyra83434;Parent=Phyra83434;rank=5 scaffold_88 . exon 124091 124225 . + . ID=Phyra83434.5;Parent=Phyra83434;constitutive=1;rank=5 scaffold_88 . CDS 124289 124343 . + 0 ID=Phyra83434;Parent=Phyra83434;rank=6 scaffold_88 . exon 124289 124343 . + . ID=Phyra83434.6;Parent=Phyra83434;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_88 . CDS 124519 124646 . + 0 ID=Phyra83434;Parent=Phyra83434;rank=7 scaffold_88 . exon 124519 124646 . + . ID=Phyra83434.7;Parent=Phyra83434;constitutive=1;ensembl_phase=1;rank=7 scaffold_88 . CDS 124717 126258 . + 0 ID=Phyra83434;Parent=Phyra83434;rank=8 scaffold_88 . exon 124717 126258 . + . ID=Phyra83434.8;Parent=Phyra83434;constitutive=1;rank=8 scaffold_88 . biological_region 130685 130689 0.999 - . logic_name=eponine scaffold_88 ensembl protein_coding_gene 128888 129819 . + . ID=Phyra72117;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_88000005;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 128888 129819 . + . ID=Phyra72117;Parent=Phyra72117;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 128888 128933 . + 0 ID=Phyra72117;Parent=Phyra72117;rank=1 scaffold_88 . exon 128888 128933 . + . ID=Phyra72117.1;Parent=Phyra72117;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_88 . CDS 129044 129136 . + 0 ID=Phyra72117;Parent=Phyra72117;rank=2 scaffold_88 . exon 129044 129136 . + . ID=Phyra72117.2;Parent=Phyra72117;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_88 . CDS 129206 129819 . + 0 ID=Phyra72117;Parent=Phyra72117;rank=3 scaffold_88 . exon 129206 129819 . + . ID=Phyra72117.3;Parent=Phyra72117;constitutive=1;ensembl_phase=1;rank=3 scaffold_88 ensembl protein_coding_gene 126528 127246 . - . ID=Phyra83435;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000025;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 126528 127246 . - . ID=Phyra83435;Parent=Phyra83435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 126528 126577 . - 0 ID=Phyra83435;Parent=Phyra83435;rank=2 scaffold_88 . exon 126528 126577 . - . ID=Phyra83435.2;Parent=Phyra83435;constitutive=1;ensembl_phase=1;rank=2 scaffold_88 . CDS 126799 127246 . - 0 ID=Phyra83435;Parent=Phyra83435;rank=1 scaffold_88 . exon 126799 127246 . - . ID=Phyra83435.1;Parent=Phyra83435;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_88 ensembl protein_coding_gene 127377 128759 . + . ID=Phyra83436;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000026;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 127377 128759 . + . ID=Phyra83436;Parent=Phyra83436;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 127377 128759 . + 0 ID=Phyra83436;Parent=Phyra83436;rank=1 scaffold_88 . exon 127377 128759 . + . ID=Phyra83436.1;Parent=Phyra83436;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 134907 135459 . - . ID=Phyra83439;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000029;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 134907 135459 . - . ID=Phyra83439;Parent=Phyra83439;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 134907 135084 . - 0 ID=Phyra83439;Parent=Phyra83439;rank=3 scaffold_88 . exon 134907 135084 . - . ID=Phyra83439.3;Parent=Phyra83439;constitutive=1;ensembl_phase=2;rank=3 scaffold_88 . CDS 135148 135198 . - 0 ID=Phyra83439;Parent=Phyra83439;rank=2 scaffold_88 . exon 135148 135198 . - . ID=Phyra83439.2;Parent=Phyra83439;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_88 . CDS 135275 135459 . - 0 ID=Phyra83439;Parent=Phyra83439;rank=1 scaffold_88 . exon 135275 135459 . - . ID=Phyra83439.1;Parent=Phyra83439;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 ensembl protein_coding_gene 129957 131495 . - . ID=Phyra96607;biotype=protein_coding;external_name=C_scaffold_88000006;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 129957 131495 . - . ID=Phyra96607;Parent=Phyra96607;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 129957 130292 . - 0 ID=Phyra96607;Parent=Phyra96607;rank=4 scaffold_88 . exon 129957 130292 . - . ID=Phyra96607.4;Parent=Phyra96607;constitutive=1;rank=4 scaffold_88 . CDS 130359 130832 . - 0 ID=Phyra96607;Parent=Phyra96607;rank=3 scaffold_88 . exon 130359 130832 . - . ID=Phyra96607.3;Parent=Phyra96607;constitutive=1;rank=3 scaffold_88 . CDS 131052 131208 . - 0 ID=Phyra96607;Parent=Phyra96607;rank=2 scaffold_88 . exon 131052 131208 . - . ID=Phyra96607.2;Parent=Phyra96607;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 131299 131495 . - 0 ID=Phyra96607;Parent=Phyra96607;rank=1 scaffold_88 . exon 131299 131495 . - . ID=Phyra96607.1;Parent=Phyra96607;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . repeat_region 144534 144643 . ? . description=dust scaffold_88 ensembl protein_coding_gene 139810 141060 . - . ID=Phyra83440;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000030;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 139810 141060 . - . ID=Phyra83440;Parent=Phyra83440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 139810 141060 . - 0 ID=Phyra83440;Parent=Phyra83440;rank=1 scaffold_88 . exon 139810 141060 . - . ID=Phyra83440.1;Parent=Phyra83440;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 142065 143652 . + . ID=Phyra83441;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000031;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 142065 143652 . + . ID=Phyra83441;Parent=Phyra83441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 142065 142166 . + 0 ID=Phyra83441;Parent=Phyra83441;rank=1 scaffold_88 . exon 142065 142166 . + . ID=Phyra83441.1;Parent=Phyra83441;constitutive=1;rank=1 scaffold_88 . CDS 142226 142363 . + 0 ID=Phyra83441;Parent=Phyra83441;rank=2 scaffold_88 . exon 142226 142363 . + . ID=Phyra83441.2;Parent=Phyra83441;constitutive=1;rank=2 scaffold_88 . CDS 142422 142584 . + 0 ID=Phyra83441;Parent=Phyra83441;rank=3 scaffold_88 . exon 142422 142584 . + . ID=Phyra83441.3;Parent=Phyra83441;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_88 . CDS 142714 143000 . + 0 ID=Phyra83441;Parent=Phyra83441;rank=4 scaffold_88 . exon 142714 143000 . + . ID=Phyra83441.4;Parent=Phyra83441;constitutive=1;ensembl_phase=1;rank=4 scaffold_88 . CDS 143078 143433 . + 0 ID=Phyra83441;Parent=Phyra83441;rank=5 scaffold_88 . exon 143078 143433 . + . ID=Phyra83441.5;Parent=Phyra83441;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_88 . CDS 143622 143652 . + 0 ID=Phyra83441;Parent=Phyra83441;rank=6 scaffold_88 . exon 143622 143652 . + . ID=Phyra83441.6;Parent=Phyra83441;constitutive=1;ensembl_phase=2;rank=6 scaffold_88 ensembl protein_coding_gene 144778 146028 . - . ID=Phyra83442;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000032;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 144778 146028 . - . ID=Phyra83442;Parent=Phyra83442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 144778 146028 . - 0 ID=Phyra83442;Parent=Phyra83442;rank=1 scaffold_88 . exon 144778 146028 . - . ID=Phyra83442.1;Parent=Phyra83442;constitutive=1;rank=1 scaffold_88 . biological_region 146702 146705 0.999 + . logic_name=eponine scaffold_88 . biological_region 146847 146848 0.999 - . logic_name=eponine scaffold_88 . biological_region 146900 146905 0.999 + . logic_name=eponine scaffold_88 . biological_region 154521 154523 0.999 + . logic_name=eponine scaffold_88 . repeat_region 155259 155283 . ? . description=trf scaffold_88 ensembl protein_coding_gene 149712 150128 . - . ID=Phyra72118;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_88000006;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 149712 150128 . - . ID=Phyra72118;Parent=Phyra72118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 149712 150128 . - 0 ID=Phyra72118;Parent=Phyra72118;rank=1 scaffold_88 . exon 149712 150128 . - . ID=Phyra72118.1;Parent=Phyra72118;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 150405 152396 . + . ID=Phyra83445;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000035;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 150405 152396 . + . ID=Phyra83445;Parent=Phyra83445;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 150405 150788 . + 0 ID=Phyra83445;Parent=Phyra83445;rank=1 scaffold_88 . exon 150405 150788 . + . ID=Phyra83445.1;Parent=Phyra83445;constitutive=1;rank=1 scaffold_88 . CDS 150861 152396 . + 0 ID=Phyra83445;Parent=Phyra83445;rank=2 scaffold_88 . exon 150861 152396 . + . ID=Phyra83445.2;Parent=Phyra83445;constitutive=1;rank=2 scaffold_88 ensembl protein_coding_gene 153887 154240 . + . ID=Phyra83446;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000036;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 153887 154240 . + . ID=Phyra83446;Parent=Phyra83446;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 153887 154240 . + 0 ID=Phyra83446;Parent=Phyra83446;rank=1 scaffold_88 . exon 153887 154240 . + . ID=Phyra83446.1;Parent=Phyra83446;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 154366 155734 . + . ID=Phyra83447;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000037;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 154366 155734 . + . ID=Phyra83447;Parent=Phyra83447;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 154366 155676 . + 0 ID=Phyra83447;Parent=Phyra83447;rank=1 scaffold_88 . exon 154366 155676 . + . ID=Phyra83447.1;Parent=Phyra83447;constitutive=1;rank=1 scaffold_88 . CDS 155702 155734 . + 0 ID=Phyra83447;Parent=Phyra83447;rank=2 scaffold_88 ensembl protein_coding_gene 147041 148951 . + . ID=Phyra96609;biotype=protein_coding;external_name=C_scaffold_88000008;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 147041 148951 . + . ID=Phyra96609;Parent=Phyra96609;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 147041 147142 . + 0 ID=Phyra96609;Parent=Phyra96609;rank=1 scaffold_88 . exon 147041 147142 . + . ID=Phyra96609.1;Parent=Phyra96609;constitutive=1;rank=1 scaffold_88 . CDS 147202 147339 . + 0 ID=Phyra96609;Parent=Phyra96609;rank=2 scaffold_88 . exon 147202 147339 . + . ID=Phyra96609.2;Parent=Phyra96609;constitutive=1;rank=2 scaffold_88 . CDS 147398 147560 . + 0 ID=Phyra96609;Parent=Phyra96609;rank=3 scaffold_88 . exon 147398 147560 . + . ID=Phyra96609.3;Parent=Phyra96609;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_88 . CDS 147690 147976 . + 0 ID=Phyra96609;Parent=Phyra96609;rank=4 scaffold_88 . exon 147690 147976 . + . ID=Phyra96609.4;Parent=Phyra96609;constitutive=1;ensembl_phase=1;rank=4 scaffold_88 . CDS 148054 148383 . + 0 ID=Phyra96609;Parent=Phyra96609;rank=5 scaffold_88 . exon 148054 148383 . + . ID=Phyra96609.5;Parent=Phyra96609;constitutive=1;rank=5 scaffold_88 . CDS 148460 148584 . + 0 ID=Phyra96609;Parent=Phyra96609;rank=6 scaffold_88 . exon 148460 148584 . + . ID=Phyra96609.6;Parent=Phyra96609;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_88 . CDS 148651 148732 . + 0 ID=Phyra96609;Parent=Phyra96609;rank=7 scaffold_88 . exon 148651 148732 . + . ID=Phyra96609.7;Parent=Phyra96609;constitutive=1;ensembl_phase=2;rank=7 scaffold_88 . CDS 148802 148951 . + 0 ID=Phyra96609;Parent=Phyra96609;rank=8 scaffold_88 . exon 148802 148951 . + . ID=Phyra96609.8;Parent=Phyra96609;constitutive=1;rank=8 scaffold_88 ensembl protein_coding_gene 158992 161118 . - . ID=Phyra72119;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_88000007;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 158992 161118 . - . ID=Phyra72119;Parent=Phyra72119;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 158992 161118 . - 0 ID=Phyra72119;Parent=Phyra72119;rank=1 scaffold_88 . exon 158992 161118 . - . ID=Phyra72119.1;Parent=Phyra72119;constitutive=1;rank=1 scaffold_88 . exon 155702 155734 . + . ID=Phyra83447.2;Parent=Phyra83447;constitutive=1;rank=2 scaffold_88 ensembl protein_coding_gene 157280 158812 . + . ID=Phyra83448;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000038;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 157280 158812 . + . ID=Phyra83448;Parent=Phyra83448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 157280 158812 . + 0 ID=Phyra83448;Parent=Phyra83448;rank=1 scaffold_88 . exon 157280 158812 . + . ID=Phyra83448.1;Parent=Phyra83448;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 161269 162432 . + . ID=Phyra83450;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000040;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 161269 162432 . + . ID=Phyra83450;Parent=Phyra83450;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 161269 162432 . + 0 ID=Phyra83450;Parent=Phyra83450;rank=1 scaffold_88 . exon 161269 162432 . + . ID=Phyra83450.1;Parent=Phyra83450;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 162522 166520 . - . ID=Phyra96614;biotype=protein_coding;external_name=C_scaffold_88000013;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 162522 166520 . - . ID=Phyra96614;Parent=Phyra96614;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 162522 162692 . - 0 ID=Phyra96614;Parent=Phyra96614;rank=14 scaffold_88 . exon 162522 162692 . - . ID=Phyra96614.14;Parent=Phyra96614;constitutive=1;rank=14 scaffold_88 . CDS 162726 162836 . - 0 ID=Phyra96614;Parent=Phyra96614;rank=13 scaffold_88 . exon 162726 162836 . - . ID=Phyra96614.13;Parent=Phyra96614;constitutive=1;rank=13 scaffold_88 . CDS 162905 163172 . - 0 ID=Phyra96614;Parent=Phyra96614;rank=12 scaffold_88 . exon 162905 163172 . - . ID=Phyra96614.12;Parent=Phyra96614;constitutive=1;ensembl_phase=2;rank=12 scaffold_88 . CDS 163203 163495 . - 0 ID=Phyra96614;Parent=Phyra96614;rank=11 scaffold_88 . exon 163203 163495 . - . ID=Phyra96614.11;Parent=Phyra96614;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_88 . CDS 163563 163690 . - 0 ID=Phyra96614;Parent=Phyra96614;rank=10 scaffold_88 . exon 163563 163690 . - . ID=Phyra96614.10;Parent=Phyra96614;constitutive=1;ensembl_phase=1;rank=10 scaffold_88 . CDS 163814 163904 . - 0 ID=Phyra96614;Parent=Phyra96614;rank=9 scaffold_88 . exon 163814 163904 . - . ID=Phyra96614.9;Parent=Phyra96614;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_88 . CDS 163975 164007 . - 0 ID=Phyra96614;Parent=Phyra96614;rank=8 scaffold_88 . exon 163975 164007 . - . ID=Phyra96614.8;Parent=Phyra96614;constitutive=1;rank=8 scaffold_88 . CDS 164072 164286 . - 0 ID=Phyra96614;Parent=Phyra96614;rank=7 scaffold_88 . exon 164072 164286 . - . ID=Phyra96614.7;Parent=Phyra96614;constitutive=1;ensembl_phase=1;rank=7 scaffold_88 . CDS 164368 164452 . - 0 ID=Phyra96614;Parent=Phyra96614;rank=6 scaffold_88 . exon 164368 164452 . - . ID=Phyra96614.6;Parent=Phyra96614;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_88 . CDS 164583 164734 . - 0 ID=Phyra96614;Parent=Phyra96614;rank=5 scaffold_88 . exon 164583 164734 . - . ID=Phyra96614.5;Parent=Phyra96614;constitutive=1;ensembl_phase=1;rank=5 scaffold_88 . CDS 164861 164949 . - 0 ID=Phyra96614;Parent=Phyra96614;rank=4 scaffold_88 . exon 164861 164949 . - . ID=Phyra96614.4;Parent=Phyra96614;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_88 . CDS 165018 165550 . - 0 ID=Phyra96614;Parent=Phyra96614;rank=3 scaffold_88 . exon 165018 165550 . - . ID=Phyra96614.3;Parent=Phyra96614;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_88 . CDS 165627 166205 . - 0 ID=Phyra96614;Parent=Phyra96614;rank=2 scaffold_88 . CDS 166269 166520 . - 0 ID=Phyra96614;Parent=Phyra96614;rank=1 scaffold_88 . biological_region 168583 168586 0.999 - . logic_name=eponine scaffold_88 . repeat_region 169080 169090 . ? . description=dust scaffold_88 . biological_region 173307 173309 0.999 + . logic_name=eponine scaffold_88 . biological_region 174147 174149 0.999 + . logic_name=eponine scaffold_88 . repeat_region 174709 174738 . ? . description=trf scaffold_88 . repeat_region 174709 174738 . ? . description=trf scaffold_88 ensembl protein_coding_gene 169174 170270 . + . ID=Phyra54113;biotype=protein_coding;external_name=gwEuk.88.74.1;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 169174 170270 . + . ID=Phyra54113;Parent=Phyra54113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 169174 169329 . + 0 ID=Phyra54113;Parent=Phyra54113;rank=1 scaffold_88 . exon 169174 169329 . + . ID=Phyra54113.1;Parent=Phyra54113;constitutive=1;rank=1 scaffold_88 . CDS 169388 169467 . + 0 ID=Phyra54113;Parent=Phyra54113;rank=2 scaffold_88 . exon 169388 169467 . + . ID=Phyra54113.2;Parent=Phyra54113;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_88 . CDS 169530 169904 . + 0 ID=Phyra54113;Parent=Phyra54113;rank=3 scaffold_88 . exon 169530 169904 . + . ID=Phyra54113.3;Parent=Phyra54113;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_88 . CDS 169985 170270 . + 0 ID=Phyra54113;Parent=Phyra54113;rank=4 scaffold_88 . exon 169985 170270 . + . ID=Phyra54113.4;Parent=Phyra54113;constitutive=1;ensembl_phase=2;rank=4 scaffold_88 ensembl protein_coding_gene 167336 168986 . + . ID=Phyra83452;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000042;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 167336 168986 . + . ID=Phyra83452;Parent=Phyra83452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 167336 167456 . + 0 ID=Phyra83452;Parent=Phyra83452;rank=1 scaffold_88 . exon 167336 167456 . + . ID=Phyra83452.1;Parent=Phyra83452;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_88 . CDS 167528 167708 . + 0 ID=Phyra83452;Parent=Phyra83452;rank=2 scaffold_88 . exon 167528 167708 . + . ID=Phyra83452.2;Parent=Phyra83452;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_88 . CDS 167789 167865 . + 0 ID=Phyra83452;Parent=Phyra83452;rank=3 scaffold_88 . exon 167789 167865 . + . ID=Phyra83452.3;Parent=Phyra83452;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_88 . CDS 167941 168066 . + 0 ID=Phyra83452;Parent=Phyra83452;rank=4 scaffold_88 . exon 167941 168066 . + . ID=Phyra83452.4;Parent=Phyra83452;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_88 . CDS 168168 168359 . + 0 ID=Phyra83452;Parent=Phyra83452;rank=5 scaffold_88 . exon 168168 168359 . + . ID=Phyra83452.5;Parent=Phyra83452;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_88 . CDS 168421 168521 . + 0 ID=Phyra83452;Parent=Phyra83452;rank=6 scaffold_88 . exon 168421 168521 . + . ID=Phyra83452.6;Parent=Phyra83452;constitutive=1;ensembl_phase=1;rank=6 scaffold_88 . CDS 168591 168986 . + 0 ID=Phyra83452;Parent=Phyra83452;rank=7 scaffold_88 . exon 168591 168986 . + . ID=Phyra83452.7;Parent=Phyra83452;constitutive=1;rank=7 scaffold_88 ensembl protein_coding_gene 171214 174858 . - . ID=Phyra83454;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000044;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 171214 174858 . - . ID=Phyra83454;Parent=Phyra83454;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 171214 171295 . - 0 ID=Phyra83454;Parent=Phyra83454;rank=3 scaffold_88 . exon 171214 171295 . - . ID=Phyra83454.3;Parent=Phyra83454;constitutive=1;ensembl_phase=2;rank=3 scaffold_88 . CDS 171352 171857 . - 0 ID=Phyra83454;Parent=Phyra83454;rank=2 scaffold_88 . exon 171352 171857 . - . ID=Phyra83454.2;Parent=Phyra83454;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_88 . CDS 171937 174858 . - 0 ID=Phyra83454;Parent=Phyra83454;rank=1 scaffold_88 . exon 171937 174858 . - . ID=Phyra83454.1;Parent=Phyra83454;constitutive=1;rank=1 scaffold_88 . exon 165627 166205 . - . ID=Phyra96614.2;Parent=Phyra96614;constitutive=1;rank=2 scaffold_88 . exon 166269 166520 . - . ID=Phyra96614.1;Parent=Phyra96614;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 181833 182891 . + . ID=Phyra83457;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000047;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 181833 182891 . + . ID=Phyra83457;Parent=Phyra83457;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 181833 182891 . + 0 ID=Phyra83457;Parent=Phyra83457;rank=1 scaffold_88 . exon 181833 182891 . + . ID=Phyra83457.1;Parent=Phyra83457;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 183025 185139 . - . ID=Phyra83458;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000048;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 183025 185139 . - . ID=Phyra83458;Parent=Phyra83458;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 183025 185139 . - 0 ID=Phyra83458;Parent=Phyra83458;rank=1 scaffold_88 . exon 183025 185139 . - . ID=Phyra83458.1;Parent=Phyra83458;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 175135 179185 . + . ID=Phyra96620;biotype=protein_coding;external_name=C_scaffold_88000019;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 175135 179185 . + . ID=Phyra96620;Parent=Phyra96620;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 175135 175425 . + 0 ID=Phyra96620;Parent=Phyra96620;rank=1 scaffold_88 . exon 175135 175425 . + . ID=Phyra96620.1;Parent=Phyra96620;constitutive=1;rank=1 scaffold_88 . CDS 175508 175656 . + 0 ID=Phyra96620;Parent=Phyra96620;rank=2 scaffold_88 . exon 175508 175656 . + . ID=Phyra96620.2;Parent=Phyra96620;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_88 . CDS 175726 175789 . + 0 ID=Phyra96620;Parent=Phyra96620;rank=3 scaffold_88 . exon 175726 175789 . + . ID=Phyra96620.3;Parent=Phyra96620;constitutive=1;ensembl_phase=2;rank=3 scaffold_88 . CDS 175868 176420 . + 0 ID=Phyra96620;Parent=Phyra96620;rank=4 scaffold_88 . exon 175868 176420 . + . ID=Phyra96620.4;Parent=Phyra96620;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_88 . CDS 176501 176677 . + 0 ID=Phyra96620;Parent=Phyra96620;rank=5 scaffold_88 . exon 176501 176677 . + . ID=Phyra96620.5;Parent=Phyra96620;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_88 . CDS 176760 177045 . + 0 ID=Phyra96620;Parent=Phyra96620;rank=6 scaffold_88 . exon 176760 177045 . + . ID=Phyra96620.6;Parent=Phyra96620;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_88 . CDS 177135 177141 . + 0 ID=Phyra96620;Parent=Phyra96620;rank=7 scaffold_88 . exon 177135 177141 . + . ID=Phyra96620.7;Parent=Phyra96620;constitutive=1;ensembl_phase=2;rank=7 scaffold_88 . CDS 177311 177391 . + 0 ID=Phyra96620;Parent=Phyra96620;rank=8 scaffold_88 . exon 177311 177391 . + . ID=Phyra96620.8;Parent=Phyra96620;constitutive=1;rank=8 scaffold_88 . CDS 177472 177576 . + 0 ID=Phyra96620;Parent=Phyra96620;rank=9 scaffold_88 . exon 177472 177576 . + . ID=Phyra96620.9;Parent=Phyra96620;constitutive=1;rank=9 scaffold_88 . CDS 177659 178067 . + 0 ID=Phyra96620;Parent=Phyra96620;rank=10 scaffold_88 . exon 177659 178067 . + . ID=Phyra96620.10;Parent=Phyra96620;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_88 . CDS 178203 178278 . + 0 ID=Phyra96620;Parent=Phyra96620;rank=11 scaffold_88 . exon 178203 178278 . + . ID=Phyra96620.11;Parent=Phyra96620;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_88 . CDS 178343 178868 . + 0 ID=Phyra96620;Parent=Phyra96620;rank=12 scaffold_88 . exon 178343 178868 . + . ID=Phyra96620.12;Parent=Phyra96620;constitutive=1;ensembl_phase=2;rank=12 scaffold_88 . CDS 178955 179185 . + 0 ID=Phyra96620;Parent=Phyra96620;rank=13 scaffold_88 . exon 178955 179185 . + . ID=Phyra96620.13;Parent=Phyra96620;constitutive=1;rank=13 scaffold_88 . biological_region 190665 190668 0.999 + . logic_name=eponine scaffold_88 . biological_region 190671 190673 0.999 - . logic_name=eponine scaffold_88 ensembl protein_coding_gene 189340 190670 . - . ID=Phyra72121;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_88000009;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 189340 190670 . - . ID=Phyra72121;Parent=Phyra72121;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 189340 190162 . - 0 ID=Phyra72121;Parent=Phyra72121;rank=3 scaffold_88 . exon 189340 190162 . - . ID=Phyra72121.3;Parent=Phyra72121;constitutive=1;ensembl_phase=2;rank=3 scaffold_88 . CDS 190237 190374 . - 0 ID=Phyra72121;Parent=Phyra72121;rank=2 scaffold_88 . exon 190237 190374 . - . ID=Phyra72121.2;Parent=Phyra72121;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_88 . CDS 190585 190670 . - 0 ID=Phyra72121;Parent=Phyra72121;rank=1 scaffold_88 . exon 190585 190670 . - . ID=Phyra72121.1;Parent=Phyra72121;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 ensembl protein_coding_gene 185658 188402 . - . ID=Phyra83459;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_88000049;logic_name=jgi_phyra1 scaffold_88 ensembl transcript 185658 188402 . - . ID=Phyra83459;Parent=Phyra83459;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_88 . CDS 185658 188402 . - 0 ID=Phyra83459;Parent=Phyra83459;rank=1 scaffold_88 . exon 185658 188402 . - . ID=Phyra83459.1;Parent=Phyra83459;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_89 1 200592 scaffold_89 . repeat_region 7 63 . ? . description=trf scaffold_89 . repeat_region 531 649 . ? . description=trf scaffold_89 . repeat_region 604 688 . ? . description=trf scaffold_89 . repeat_region 1117 1158 . ? . description=dust scaffold_89 . repeat_region 1118 1142 . ? . description=trf scaffold_89 . repeat_region 1225 3285 . ? . description=dust scaffold_89 . repeat_region 3352 3434 . ? . description=trf scaffold_89 . repeat_region 3390 3422 . ? . description=trf scaffold_89 . repeat_region 3444 3500 . ? . description=trf scaffold_89 . biological_region 3707 3712 0.999 - . logic_name=eponine scaffold_89 . biological_region 4384 4389 0.999 + . logic_name=eponine scaffold_89 . biological_region 5143 5148 0.999 + . logic_name=eponine scaffold_89 . repeat_region 5354 5410 . ? . description=trf scaffold_89 . repeat_region 5419 5531 . ? . description=trf scaffold_89 . repeat_region 5423 5472 . ? . description=trf scaffold_89 . repeat_region 5448 5532 . ? . description=trf scaffold_89 . repeat_region 5465 5514 . ? . description=trf scaffold_89 . repeat_region 5958 7510 . ? . description=dust scaffold_89 . repeat_region 7918 8000 . ? . description=trf scaffold_89 . repeat_region 7956 7988 . ? . description=trf scaffold_89 . repeat_region 8010 8053 . ? . description=trf scaffold_89 . biological_region 8259 8264 0.999 - . logic_name=eponine scaffold_89 . repeat_region 8341 17339 . ? . description=dust scaffold_89 ensembl protein_coding_gene 263 1111 . - . ID=Phyra83461;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000001;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 263 1111 . - . ID=Phyra83461;Parent=Phyra83461;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 263 1111 . - 0 ID=Phyra83461;Parent=Phyra83461;rank=1 scaffold_89 . exon 263 1111 . - . ID=Phyra83461.1;Parent=Phyra83461;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 3853 4852 . - . ID=Phyra83462;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000002;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 3853 4852 . - . ID=Phyra83462;Parent=Phyra83462;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 3853 4554 . - 0 ID=Phyra83462;Parent=Phyra83462;rank=2 scaffold_89 . exon 3853 4554 . - . ID=Phyra83462.2;Parent=Phyra83462;constitutive=1;rank=2 scaffold_89 . CDS 4652 4852 . - 0 ID=Phyra83462;Parent=Phyra83462;rank=1 scaffold_89 . exon 4652 4852 . - . ID=Phyra83462.1;Parent=Phyra83462;constitutive=1;rank=1 scaffold_89 . repeat_region 18650 19241 . ? . description=dust scaffold_89 . biological_region 19344 19348 0.999 - . logic_name=eponine scaffold_89 . repeat_region 20898 20909 . ? . description=dust scaffold_89 . repeat_region 27277 27330 . ? . description=trf scaffold_89 ensembl protein_coding_gene 31084 32054 . - . ID=Phyra83463;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000003;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 31084 32054 . - . ID=Phyra83463;Parent=Phyra83463;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 31084 31389 . - 0 ID=Phyra83463;Parent=Phyra83463;rank=3 scaffold_89 . exon 31084 31389 . - . ID=Phyra83463.3;Parent=Phyra83463;constitutive=1;rank=3 scaffold_89 . CDS 31749 31856 . - 0 ID=Phyra83463;Parent=Phyra83463;rank=2 scaffold_89 . exon 31749 31856 . - . ID=Phyra83463.2;Parent=Phyra83463;constitutive=1;rank=2 scaffold_89 . CDS 31935 32054 . - 0 ID=Phyra83463;Parent=Phyra83463;rank=1 scaffold_89 . exon 31935 32054 . - . ID=Phyra83463.1;Parent=Phyra83463;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 33270 34022 . + . ID=Phyra83464;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000004;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 33270 34022 . + . ID=Phyra83464;Parent=Phyra83464;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 33270 34022 . + 0 ID=Phyra83464;Parent=Phyra83464;rank=1 scaffold_89 . exon 33270 34022 . + . ID=Phyra83464.1;Parent=Phyra83464;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 37052 37606 . - . ID=Phyra83465;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000005;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 37052 37606 . - . ID=Phyra83465;Parent=Phyra83465;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 37052 37606 . - 0 ID=Phyra83465;Parent=Phyra83465;rank=1 scaffold_89 . exon 37052 37606 . - . ID=Phyra83465.1;Parent=Phyra83465;constitutive=1;rank=1 scaffold_89 . biological_region 39003 39005 0.999 - . logic_name=eponine scaffold_89 . biological_region 39226 39228 0.999 - . logic_name=eponine scaffold_89 . biological_region 39965 39966 0.999 + . logic_name=eponine scaffold_89 . biological_region 41127 41130 0.999 + . logic_name=eponine scaffold_89 . biological_region 41232 41236 0.999 - . logic_name=eponine scaffold_89 . biological_region 41290 41293 0.999 + . logic_name=eponine scaffold_89 . biological_region 41310 41318 0.999 + . logic_name=eponine scaffold_89 . biological_region 41344 41349 0.999 - . logic_name=eponine scaffold_89 . repeat_region 41469 41484 . ? . description=dust scaffold_89 . biological_region 45287 45287 0.999 - . logic_name=eponine scaffold_89 . biological_region 46706 46707 0.999 + . logic_name=eponine scaffold_89 . biological_region 46706 46711 0.999 - . logic_name=eponine scaffold_89 . biological_region 46727 46739 0.999 - . logic_name=eponine scaffold_89 . biological_region 47483 47485 0.999 - . logic_name=eponine scaffold_89 . biological_region 47745 47746 0.999 - . logic_name=eponine scaffold_89 ensembl protein_coding_gene 38806 39195 . + . ID=Phyra83466;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000006;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 38806 39195 . + . ID=Phyra83466;Parent=Phyra83466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 38806 38981 . + 0 ID=Phyra83466;Parent=Phyra83466;rank=1 scaffold_89 . exon 38806 38981 . + . ID=Phyra83466.1;Parent=Phyra83466;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 . CDS 39051 39195 . + 0 ID=Phyra83466;Parent=Phyra83466;rank=2 scaffold_89 . exon 39051 39195 . + . ID=Phyra83466.2;Parent=Phyra83466;constitutive=1;ensembl_phase=2;rank=2 scaffold_89 ensembl protein_coding_gene 39610 41461 . - . ID=Phyra83467;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000007;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 39610 41461 . - . ID=Phyra83467;Parent=Phyra83467;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 39610 39692 . - 0 ID=Phyra83467;Parent=Phyra83467;rank=7 scaffold_89 . exon 39610 39692 . - . ID=Phyra83467.7;Parent=Phyra83467;constitutive=1;ensembl_phase=1;rank=7 scaffold_89 . CDS 39776 39856 . - 0 ID=Phyra83467;Parent=Phyra83467;rank=6 scaffold_89 . exon 39776 39856 . - . ID=Phyra83467.6;Parent=Phyra83467;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_89 . CDS 39902 40090 . - 0 ID=Phyra83467;Parent=Phyra83467;rank=5 scaffold_89 . exon 39902 40090 . - . ID=Phyra83467.5;Parent=Phyra83467;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_89 . CDS 40155 40220 . - 0 ID=Phyra83467;Parent=Phyra83467;rank=4 scaffold_89 . exon 40155 40220 . - . ID=Phyra83467.4;Parent=Phyra83467;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_89 . CDS 40295 40395 . - 0 ID=Phyra83467;Parent=Phyra83467;rank=3 scaffold_89 . exon 40295 40395 . - . ID=Phyra83467.3;Parent=Phyra83467;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_89 . CDS 40467 40539 . - 0 ID=Phyra83467;Parent=Phyra83467;rank=2 scaffold_89 . exon 40467 40539 . - . ID=Phyra83467.2;Parent=Phyra83467;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_89 . CDS 40606 41461 . - 0 ID=Phyra83467;Parent=Phyra83467;rank=1 scaffold_89 . exon 40606 41461 . - . ID=Phyra83467.1;Parent=Phyra83467;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_89 ensembl protein_coding_gene 44257 46339 . - . ID=Phyra83469;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000009;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 44257 46339 . - . ID=Phyra83469;Parent=Phyra83469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 44257 46070 . - 0 ID=Phyra83469;Parent=Phyra83469;rank=3 scaffold_89 . exon 44257 46070 . - . ID=Phyra83469.3;Parent=Phyra83469;constitutive=1;ensembl_phase=1;rank=3 scaffold_89 . CDS 46151 46157 . - 0 ID=Phyra83469;Parent=Phyra83469;rank=2 scaffold_89 . exon 46151 46157 . - . ID=Phyra83469.2;Parent=Phyra83469;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_89 . CDS 46241 46339 . - 0 ID=Phyra83469;Parent=Phyra83469;rank=1 scaffold_89 . exon 46241 46339 . - . ID=Phyra83469.1;Parent=Phyra83469;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 46590 49135 . + . ID=Phyra83470;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000010;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 46590 49135 . + . ID=Phyra83470;Parent=Phyra83470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 46590 46683 . + 0 ID=Phyra83470;Parent=Phyra83470;rank=1 scaffold_89 . exon 46590 46683 . + . ID=Phyra83470.1;Parent=Phyra83470;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_89 . CDS 46768 46847 . + 0 ID=Phyra83470;Parent=Phyra83470;rank=2 scaffold_89 . exon 46768 46847 . + . ID=Phyra83470.2;Parent=Phyra83470;constitutive=1;ensembl_phase=1;rank=2 scaffold_89 . CDS 46941 47804 . + 0 ID=Phyra83470;Parent=Phyra83470;rank=3 scaffold_89 . exon 46941 47804 . + . ID=Phyra83470.3;Parent=Phyra83470;constitutive=1;rank=3 scaffold_89 . CDS 47872 47997 . + 0 ID=Phyra83470;Parent=Phyra83470;rank=4 scaffold_89 . CDS 48056 49135 . + 0 ID=Phyra83470;Parent=Phyra83470;rank=5 scaffold_89 ensembl protein_coding_gene 42743 43551 . + . ID=Phyra96621;biotype=protein_coding;external_name=C_scaffold_89000001;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 42743 43551 . + . ID=Phyra96621;Parent=Phyra96621;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 42743 42798 . + 0 ID=Phyra96621;Parent=Phyra96621;rank=1 scaffold_89 . exon 42743 42798 . + . ID=Phyra96621.1;Parent=Phyra96621;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 . CDS 43102 43480 . + 0 ID=Phyra96621;Parent=Phyra96621;rank=2 scaffold_89 . exon 43102 43480 . + . ID=Phyra96621.2;Parent=Phyra96621;constitutive=1;ensembl_phase=2;rank=2 scaffold_89 . CDS 43522 43551 . + 0 ID=Phyra96621;Parent=Phyra96621;rank=3 scaffold_89 . exon 43522 43551 . + . ID=Phyra96621.3;Parent=Phyra96621;constitutive=1;rank=3 scaffold_89 . exon 47872 47997 . + . ID=Phyra83470.4;Parent=Phyra83470;constitutive=1;rank=4 scaffold_89 . exon 48056 49135 . + . ID=Phyra83470.5;Parent=Phyra83470;constitutive=1;rank=5 scaffold_89 ensembl protein_coding_gene 55816 56436 . - . ID=Phyra83472;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000012;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 55816 56436 . - . ID=Phyra83472;Parent=Phyra83472;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 55816 56436 . - 0 ID=Phyra83472;Parent=Phyra83472;rank=1 scaffold_89 . exon 55816 56436 . - . ID=Phyra83472.1;Parent=Phyra83472;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 49347 54838 . - . ID=Phyra96624;biotype=protein_coding;external_name=C_scaffold_89000004;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 49347 54838 . - . ID=Phyra96624;Parent=Phyra96624;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 49347 49856 . - 0 ID=Phyra96624;Parent=Phyra96624;rank=8 scaffold_89 . exon 49347 49856 . - . ID=Phyra96624.8;Parent=Phyra96624;constitutive=1;rank=8 scaffold_89 . CDS 50369 50615 . - 0 ID=Phyra96624;Parent=Phyra96624;rank=7 scaffold_89 . exon 50369 50615 . - . ID=Phyra96624.7;Parent=Phyra96624;constitutive=1;ensembl_phase=2;rank=7 scaffold_89 . CDS 50694 51250 . - 0 ID=Phyra96624;Parent=Phyra96624;rank=6 scaffold_89 . exon 50694 51250 . - . ID=Phyra96624.6;Parent=Phyra96624;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_89 . CDS 51287 51410 . - 0 ID=Phyra96624;Parent=Phyra96624;rank=5 scaffold_89 . exon 51287 51410 . - . ID=Phyra96624.5;Parent=Phyra96624;constitutive=1;ensembl_phase=2;rank=5 scaffold_89 . CDS 51563 52624 . - 0 ID=Phyra96624;Parent=Phyra96624;rank=4 scaffold_89 . exon 51563 52624 . - . ID=Phyra96624.4;Parent=Phyra96624;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_89 . CDS 52930 53946 . - 0 ID=Phyra96624;Parent=Phyra96624;rank=3 scaffold_89 . exon 52930 53946 . - . ID=Phyra96624.3;Parent=Phyra96624;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_89 . CDS 54222 54485 . - 0 ID=Phyra96624;Parent=Phyra96624;rank=2 scaffold_89 . exon 54222 54485 . - . ID=Phyra96624.2;Parent=Phyra96624;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_89 . CDS 54552 54838 . - 0 ID=Phyra96624;Parent=Phyra96624;rank=1 scaffold_89 . exon 54552 54838 . - . ID=Phyra96624.1;Parent=Phyra96624;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 . biological_region 58188 58189 0.999 + . logic_name=eponine scaffold_89 . biological_region 58307 58310 0.999 - . logic_name=eponine scaffold_89 . biological_region 58530 58532 0.999 - . logic_name=eponine scaffold_89 . biological_region 63512 63514 0.999 - . logic_name=eponine scaffold_89 . biological_region 63775 63779 0.999 + . logic_name=eponine scaffold_89 . repeat_region 63929 63979 . ? . description=trf scaffold_89 . biological_region 64863 64870 0.999 + . logic_name=eponine scaffold_89 . repeat_region 65192 65222 . ? . description=trf scaffold_89 . repeat_region 66728 66754 . ? . description=trf scaffold_89 ensembl protein_coding_gene 57956 58555 . - . ID=Phyra83473;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000013;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 57956 58555 . - . ID=Phyra83473;Parent=Phyra83473;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 57956 58555 . - 0 ID=Phyra83473;Parent=Phyra83473;rank=1 scaffold_89 . exon 57956 58555 . - . ID=Phyra83473.1;Parent=Phyra83473;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 62590 63021 . - . ID=Phyra83474;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000014;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 62590 63021 . - . ID=Phyra83474;Parent=Phyra83474;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 62590 63021 . - 0 ID=Phyra83474;Parent=Phyra83474;rank=1 scaffold_89 . exon 62590 63021 . - . ID=Phyra83474.1;Parent=Phyra83474;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 63682 64116 . - . ID=Phyra83475;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000015;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 63682 64116 . - . ID=Phyra83475;Parent=Phyra83475;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 63682 64116 . - 0 ID=Phyra83475;Parent=Phyra83475;rank=1 scaffold_89 . exon 63682 64116 . - . ID=Phyra83475.1;Parent=Phyra83475;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 64859 65242 . - . ID=Phyra83476;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000016;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 64859 65242 . - . ID=Phyra83476;Parent=Phyra83476;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 64859 65242 . - 0 ID=Phyra83476;Parent=Phyra83476;rank=1 scaffold_89 . exon 64859 65242 . - . ID=Phyra83476.1;Parent=Phyra83476;constitutive=1;rank=1 scaffold_89 . repeat_region 75755 75768 . ? . description=dust scaffold_89 ensembl protein_coding_gene 67396 67857 . - . ID=Phyra83477;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000017;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 67396 67857 . - . ID=Phyra83477;Parent=Phyra83477;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 67396 67606 . - 0 ID=Phyra83477;Parent=Phyra83477;rank=2 scaffold_89 . exon 67396 67606 . - . ID=Phyra83477.2;Parent=Phyra83477;constitutive=1;ensembl_phase=2;rank=2 scaffold_89 . CDS 67676 67857 . - 0 ID=Phyra83477;Parent=Phyra83477;rank=1 scaffold_89 . exon 67676 67857 . - . ID=Phyra83477.1;Parent=Phyra83477;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 ensembl protein_coding_gene 68975 71869 . - . ID=Phyra83478;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000018;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 68975 71869 . - . ID=Phyra83478;Parent=Phyra83478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 68975 69310 . - 0 ID=Phyra83478;Parent=Phyra83478;rank=3 scaffold_89 . exon 68975 69310 . - . ID=Phyra83478.3;Parent=Phyra83478;constitutive=1;rank=3 scaffold_89 . CDS 69383 70409 . - 0 ID=Phyra83478;Parent=Phyra83478;rank=2 scaffold_89 . exon 69383 70409 . - . ID=Phyra83478.2;Parent=Phyra83478;constitutive=1;ensembl_phase=2;rank=2 scaffold_89 . CDS 70899 71869 . - 0 ID=Phyra83478;Parent=Phyra83478;rank=1 scaffold_89 . exon 70899 71869 . - . ID=Phyra83478.1;Parent=Phyra83478;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 ensembl protein_coding_gene 75298 79450 . + . ID=Phyra83479;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000019;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 75298 79450 . + . ID=Phyra83479;Parent=Phyra83479;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 75298 75338 . + 0 ID=Phyra83479;Parent=Phyra83479;rank=1 scaffold_89 . exon 75298 75338 . + . ID=Phyra83479.1;Parent=Phyra83479;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 . CDS 75413 75479 . + 0 ID=Phyra83479;Parent=Phyra83479;rank=2 scaffold_89 . exon 75413 75479 . + . ID=Phyra83479.2;Parent=Phyra83479;constitutive=1;ensembl_phase=2;rank=2 scaffold_89 . CDS 75556 75708 . + 0 ID=Phyra83479;Parent=Phyra83479;rank=3 scaffold_89 . exon 75556 75708 . + . ID=Phyra83479.3;Parent=Phyra83479;constitutive=1;rank=3 scaffold_89 . CDS 75801 76139 . + 0 ID=Phyra83479;Parent=Phyra83479;rank=4 scaffold_89 . exon 75801 76139 . + . ID=Phyra83479.4;Parent=Phyra83479;constitutive=1;rank=4 scaffold_89 . CDS 76214 76419 . + 0 ID=Phyra83479;Parent=Phyra83479;rank=5 scaffold_89 . exon 76214 76419 . + . ID=Phyra83479.5;Parent=Phyra83479;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_89 . CDS 76791 76931 . + 0 ID=Phyra83479;Parent=Phyra83479;rank=6 scaffold_89 . CDS 77106 78258 . + 0 ID=Phyra83479;Parent=Phyra83479;rank=7 scaffold_89 . CDS 78338 79450 . + 0 ID=Phyra83479;Parent=Phyra83479;rank=8 scaffold_89 . biological_region 76820 76820 0.999 - . logic_name=eponine scaffold_89 . biological_region 78628 78628 0.999 + . logic_name=eponine scaffold_89 . biological_region 81084 81087 0.999 - . logic_name=eponine scaffold_89 . biological_region 81598 81601 0.999 - . logic_name=eponine scaffold_89 . biological_region 82444 82445 0.999 + . logic_name=eponine scaffold_89 . exon 76791 76931 . + . ID=Phyra83479.6;Parent=Phyra83479;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_89 . exon 77106 78258 . + . ID=Phyra83479.7;Parent=Phyra83479;constitutive=1;ensembl_phase=2;rank=7 scaffold_89 . exon 78338 79450 . + . ID=Phyra83479.8;Parent=Phyra83479;constitutive=1;rank=8 scaffold_89 ensembl protein_coding_gene 79955 81602 . - . ID=Phyra83480;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000020;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 79955 81602 . - . ID=Phyra83480;Parent=Phyra83480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 79955 80012 . - 0 ID=Phyra83480;Parent=Phyra83480;rank=2 scaffold_89 . exon 79955 80012 . - . ID=Phyra83480.2;Parent=Phyra83480;constitutive=1;ensembl_phase=2;rank=2 scaffold_89 . CDS 80035 81602 . - 0 ID=Phyra83480;Parent=Phyra83480;rank=1 scaffold_89 . exon 80035 81602 . - . ID=Phyra83480.1;Parent=Phyra83480;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 ensembl protein_coding_gene 84488 85261 . + . ID=Phyra83481;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000021;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 84488 85261 . + . ID=Phyra83481;Parent=Phyra83481;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 84488 85261 . + 0 ID=Phyra83481;Parent=Phyra83481;rank=1 scaffold_89 . exon 84488 85261 . + . ID=Phyra83481.1;Parent=Phyra83481;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 85547 86023 . + . ID=Phyra83482;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000022;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 85547 86023 . + . ID=Phyra83482;Parent=Phyra83482;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 85547 86023 . + 0 ID=Phyra83482;Parent=Phyra83482;rank=1 scaffold_89 . exon 85547 86023 . + . ID=Phyra83482.1;Parent=Phyra83482;constitutive=1;rank=1 scaffold_89 . repeat_region 86775 86902 . ? . description=trf scaffold_89 . repeat_region 86794 86917 . ? . description=trf scaffold_89 . repeat_region 87656 87675 . ? . description=trf scaffold_89 . repeat_region 89054 89106 . ? . description=trf scaffold_89 . repeat_region 92798 92822 . ? . description=trf scaffold_89 . repeat_region 93947 93996 . ? . description=dust scaffold_89 ensembl protein_coding_gene 86405 88525 . - . ID=Phyra54142;biotype=protein_coding;external_name=gwEuk.89.17.1;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 86405 88525 . - . ID=Phyra54142;Parent=Phyra54142;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 86405 86462 . - 0 ID=Phyra54142;Parent=Phyra54142;rank=3 scaffold_89 . exon 86405 86462 . - . ID=Phyra54142.3;Parent=Phyra54142;constitutive=1;ensembl_phase=2;rank=3 scaffold_89 . CDS 87039 87501 . - 0 ID=Phyra54142;Parent=Phyra54142;rank=2 scaffold_89 . exon 87039 87501 . - . ID=Phyra54142.2;Parent=Phyra54142;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_89 . CDS 87568 88525 . - 0 ID=Phyra54142;Parent=Phyra54142;rank=1 scaffold_89 . exon 87568 88525 . - . ID=Phyra54142.1;Parent=Phyra54142;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_89 ensembl protein_coding_gene 90835 92280 . + . ID=Phyra83484;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000024;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 90835 92280 . + . ID=Phyra83484;Parent=Phyra83484;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 90835 92280 . + 0 ID=Phyra83484;Parent=Phyra83484;rank=1 scaffold_89 . exon 90835 92280 . + . ID=Phyra83484.1;Parent=Phyra83484;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 93634 95031 . + . ID=Phyra83485;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000025;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 93634 95031 . + . ID=Phyra83485;Parent=Phyra83485;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 93634 93942 . + 0 ID=Phyra83485;Parent=Phyra83485;rank=1 scaffold_89 . exon 93634 93942 . + . ID=Phyra83485.1;Parent=Phyra83485;constitutive=1;rank=1 scaffold_89 . CDS 94108 95031 . + 0 ID=Phyra83485;Parent=Phyra83485;rank=2 scaffold_89 . exon 94108 95031 . + . ID=Phyra83485.2;Parent=Phyra83485;constitutive=1;rank=2 scaffold_89 ensembl protein_coding_gene 95309 96190 . - . ID=Phyra83486;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000026;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 95309 96190 . - . ID=Phyra83486;Parent=Phyra83486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 95309 95387 . - 0 ID=Phyra83486;Parent=Phyra83486;rank=5 scaffold_89 . exon 95309 95387 . - . ID=Phyra83486.5;Parent=Phyra83486;constitutive=1;ensembl_phase=2;rank=5 scaffold_89 . CDS 95454 95515 . - 0 ID=Phyra83486;Parent=Phyra83486;rank=4 scaffold_89 . exon 95454 95515 . - . ID=Phyra83486.4;Parent=Phyra83486;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_89 . CDS 95591 95708 . - 0 ID=Phyra83486;Parent=Phyra83486;rank=3 scaffold_89 . CDS 95780 95865 . - 0 ID=Phyra83486;Parent=Phyra83486;rank=2 scaffold_89 . CDS 95954 96190 . - 0 ID=Phyra83486;Parent=Phyra83486;rank=1 scaffold_89 . biological_region 96091 96094 0.999 - . logic_name=eponine scaffold_89 . biological_region 99141 99145 0.999 + . logic_name=eponine scaffold_89 . biological_region 99990 99991 0.999 + . logic_name=eponine scaffold_89 . biological_region 100523 100526 0.999 - . logic_name=eponine scaffold_89 . biological_region 104492 104495 0.999 - . logic_name=eponine scaffold_89 . biological_region 104566 104568 0.999 - . logic_name=eponine scaffold_89 ensembl protein_coding_gene 97522 98613 . + . ID=Phyra72122;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_89000001;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 97522 98613 . + . ID=Phyra72122;Parent=Phyra72122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 97522 98613 . + 0 ID=Phyra72122;Parent=Phyra72122;rank=1 scaffold_89 . exon 97522 98613 . + . ID=Phyra72122.1;Parent=Phyra72122;constitutive=1;rank=1 scaffold_89 . exon 95591 95708 . - . ID=Phyra83486.3;Parent=Phyra83486;constitutive=1;ensembl_phase=2;rank=3 scaffold_89 . exon 95780 95865 . - . ID=Phyra83486.2;Parent=Phyra83486;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_89 . exon 95954 96190 . - . ID=Phyra83486.1;Parent=Phyra83486;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 96384 96827 . - . ID=Phyra83487;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000027;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 96384 96827 . - . ID=Phyra83487;Parent=Phyra83487;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 96384 96827 . - 0 ID=Phyra83487;Parent=Phyra83487;rank=1 scaffold_89 . exon 96384 96827 . - . ID=Phyra83487.1;Parent=Phyra83487;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 98844 100248 . - . ID=Phyra83489;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000029;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 98844 100248 . - . ID=Phyra83489;Parent=Phyra83489;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 98844 98891 . - 0 ID=Phyra83489;Parent=Phyra83489;rank=4 scaffold_89 . exon 98844 98891 . - . ID=Phyra83489.4;Parent=Phyra83489;constitutive=1;rank=4 scaffold_89 . CDS 98963 99546 . - 0 ID=Phyra83489;Parent=Phyra83489;rank=3 scaffold_89 . exon 98963 99546 . - . ID=Phyra83489.3;Parent=Phyra83489;constitutive=1;ensembl_phase=1;rank=3 scaffold_89 . CDS 99616 99803 . - 0 ID=Phyra83489;Parent=Phyra83489;rank=2 scaffold_89 . exon 99616 99803 . - . ID=Phyra83489.2;Parent=Phyra83489;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_89 . CDS 99884 100248 . - 0 ID=Phyra83489;Parent=Phyra83489;rank=1 scaffold_89 . exon 99884 100248 . - . ID=Phyra83489.1;Parent=Phyra83489;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 ensembl protein_coding_gene 100382 104055 . + . ID=Phyra83490;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000030;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 100382 104055 . + . ID=Phyra83490;Parent=Phyra83490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 100382 100920 . + 0 ID=Phyra83490;Parent=Phyra83490;rank=1 scaffold_89 . exon 100382 100920 . + . ID=Phyra83490.1;Parent=Phyra83490;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 . CDS 100985 103403 . + 0 ID=Phyra83490;Parent=Phyra83490;rank=2 scaffold_89 . exon 100985 103403 . + . ID=Phyra83490.2;Parent=Phyra83490;constitutive=1;ensembl_phase=2;rank=2 scaffold_89 . CDS 103594 103606 . + 0 ID=Phyra83490;Parent=Phyra83490;rank=3 scaffold_89 . exon 103594 103606 . + . ID=Phyra83490.3;Parent=Phyra83490;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_89 . CDS 103700 104055 . + 0 ID=Phyra83490;Parent=Phyra83490;rank=4 scaffold_89 . exon 103700 104055 . + . ID=Phyra83490.4;Parent=Phyra83490;constitutive=1;ensembl_phase=1;rank=4 scaffold_89 ensembl protein_coding_gene 104416 106332 . + . ID=Phyra83491;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000031;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 104416 106332 . + . ID=Phyra83491;Parent=Phyra83491;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 104416 106332 . + 0 ID=Phyra83491;Parent=Phyra83491;rank=1 scaffold_89 . exon 104416 106332 . + . ID=Phyra83491.1;Parent=Phyra83491;constitutive=1;rank=1 scaffold_89 . repeat_region 109900 109949 . ? . description=dust scaffold_89 ensembl protein_coding_gene 106445 107398 . - . ID=Phyra83492;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000032;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 106445 107398 . - . ID=Phyra83492;Parent=Phyra83492;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 106445 106894 . - 0 ID=Phyra83492;Parent=Phyra83492;rank=3 scaffold_89 . exon 106445 106894 . - . ID=Phyra83492.3;Parent=Phyra83492;constitutive=1;rank=3 scaffold_89 . CDS 106946 107023 . - 0 ID=Phyra83492;Parent=Phyra83492;rank=2 scaffold_89 . exon 106946 107023 . - . ID=Phyra83492.2;Parent=Phyra83492;constitutive=1;rank=2 scaffold_89 . CDS 107096 107398 . - 0 ID=Phyra83492;Parent=Phyra83492;rank=1 scaffold_89 . exon 107096 107398 . - . ID=Phyra83492.1;Parent=Phyra83492;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 107982 109766 . - . ID=Phyra83493;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000033;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 107982 109766 . - . ID=Phyra83493;Parent=Phyra83493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 107982 109766 . - 0 ID=Phyra83493;Parent=Phyra83493;rank=1 scaffold_89 . exon 107982 109766 . - . ID=Phyra83493.1;Parent=Phyra83493;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 112298 113043 . + . ID=Phyra83494;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000034;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 112298 113043 . + . ID=Phyra83494;Parent=Phyra83494;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 112298 112649 . + 0 ID=Phyra83494;Parent=Phyra83494;rank=1 scaffold_89 . exon 112298 112649 . + . ID=Phyra83494.1;Parent=Phyra83494;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_89 . CDS 112721 113043 . + 0 ID=Phyra83494;Parent=Phyra83494;rank=2 scaffold_89 . exon 112721 113043 . + . ID=Phyra83494.2;Parent=Phyra83494;constitutive=1;ensembl_phase=1;rank=2 scaffold_89 ensembl protein_coding_gene 113365 114807 . - . ID=Phyra83495;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000035;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 113365 114807 . - . ID=Phyra83495;Parent=Phyra83495;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 113365 114807 . - 0 ID=Phyra83495;Parent=Phyra83495;rank=1 scaffold_89 . exon 113365 114807 . - . ID=Phyra83495.1;Parent=Phyra83495;constitutive=1;rank=1 scaffold_89 . biological_region 115475 115476 0.999 - . logic_name=eponine scaffold_89 ensembl protein_coding_gene 115307 116695 . + . ID=Phyra83496;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000036;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 115307 116695 . + . ID=Phyra83496;Parent=Phyra83496;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 115307 116695 . + 0 ID=Phyra83496;Parent=Phyra83496;rank=1 scaffold_89 . exon 115307 116695 . + . ID=Phyra83496.1;Parent=Phyra83496;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 117861 118914 . - . ID=Phyra83497;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000037;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 117861 118914 . - . ID=Phyra83497;Parent=Phyra83497;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 117861 117876 . - 0 ID=Phyra83497;Parent=Phyra83497;rank=2 scaffold_89 . exon 117861 117876 . - . ID=Phyra83497.2;Parent=Phyra83497;constitutive=1;ensembl_phase=2;rank=2 scaffold_89 . CDS 118022 118914 . - 0 ID=Phyra83497;Parent=Phyra83497;rank=1 scaffold_89 . exon 118022 118914 . - . ID=Phyra83497.1;Parent=Phyra83497;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 ensembl protein_coding_gene 120371 121828 . - . ID=Phyra83498;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000038;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 120371 121828 . - . ID=Phyra83498;Parent=Phyra83498;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 120371 121828 . - 0 ID=Phyra83498;Parent=Phyra83498;rank=1 scaffold_89 . exon 120371 121828 . - . ID=Phyra83498.1;Parent=Phyra83498;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 122545 124763 . - . ID=Phyra83499;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000039;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 122545 124763 . - . ID=Phyra83499;Parent=Phyra83499;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 122545 122567 . - 0 ID=Phyra83499;Parent=Phyra83499;rank=6 scaffold_89 . exon 122545 122567 . - . ID=Phyra83499.6;Parent=Phyra83499;constitutive=1;ensembl_phase=1;rank=6 scaffold_89 . CDS 122689 122847 . - 0 ID=Phyra83499;Parent=Phyra83499;rank=5 scaffold_89 . exon 122689 122847 . - . ID=Phyra83499.5;Parent=Phyra83499;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_89 . CDS 122904 123093 . - 0 ID=Phyra83499;Parent=Phyra83499;rank=4 scaffold_89 . exon 122904 123093 . - . ID=Phyra83499.4;Parent=Phyra83499;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_89 . CDS 123191 123332 . - 0 ID=Phyra83499;Parent=Phyra83499;rank=3 scaffold_89 . exon 123191 123332 . - . ID=Phyra83499.3;Parent=Phyra83499;constitutive=1;ensembl_phase=2;rank=3 scaffold_89 . CDS 123805 123832 . - 0 ID=Phyra83499;Parent=Phyra83499;rank=2 scaffold_89 . exon 123805 123832 . - . ID=Phyra83499.2;Parent=Phyra83499;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_89 . CDS 123884 124763 . - 0 ID=Phyra83499;Parent=Phyra83499;rank=1 scaffold_89 . exon 123884 124763 . - . ID=Phyra83499.1;Parent=Phyra83499;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_89 . repeat_region 124977 125022 . ? . description=trf scaffold_89 . repeat_region 125689 125696 . ? . description=dust scaffold_89 . repeat_region 127172 127187 . ? . description=dust scaffold_89 . repeat_region 128511 128583 . ? . description=trf scaffold_89 . repeat_region 128596 128655 . ? . description=trf scaffold_89 . repeat_region 128853 128929 . ? . description=trf scaffold_89 . repeat_region 130849 130856 . ? . description=dust scaffold_89 ensembl protein_coding_gene 128429 129684 . - . ID=Phyra83500;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000040;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 128429 129684 . - . ID=Phyra83500;Parent=Phyra83500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 128429 129072 . - 0 ID=Phyra83500;Parent=Phyra83500;rank=2 scaffold_89 . exon 128429 129072 . - . ID=Phyra83500.2;Parent=Phyra83500;constitutive=1;ensembl_phase=1;rank=2 scaffold_89 . CDS 129144 129684 . - 0 ID=Phyra83500;Parent=Phyra83500;rank=1 scaffold_89 . exon 129144 129684 . - . ID=Phyra83500.1;Parent=Phyra83500;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_89 . biological_region 134982 134984 0.999 - . logic_name=eponine scaffold_89 . biological_region 135269 135269 0.999 - . logic_name=eponine scaffold_89 ensembl protein_coding_gene 134694 135416 . - . ID=Phyra83501;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000041;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 134694 135416 . - . ID=Phyra83501;Parent=Phyra83501;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 134694 134789 . - 0 ID=Phyra83501;Parent=Phyra83501;rank=5 scaffold_89 . exon 134694 134789 . - . ID=Phyra83501.5;Parent=Phyra83501;constitutive=1;rank=5 scaffold_89 . CDS 134872 135032 . - 0 ID=Phyra83501;Parent=Phyra83501;rank=4 scaffold_89 . exon 134872 135032 . - . ID=Phyra83501.4;Parent=Phyra83501;constitutive=1;ensembl_phase=1;rank=4 scaffold_89 . CDS 135080 135101 . - 0 ID=Phyra83501;Parent=Phyra83501;rank=3 scaffold_89 . exon 135080 135101 . - . ID=Phyra83501.3;Parent=Phyra83501;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_89 . CDS 135139 135221 . - 0 ID=Phyra83501;Parent=Phyra83501;rank=2 scaffold_89 . exon 135139 135221 . - . ID=Phyra83501.2;Parent=Phyra83501;constitutive=1;ensembl_phase=1;rank=2 scaffold_89 . CDS 135356 135416 . - 0 ID=Phyra83501;Parent=Phyra83501;rank=1 scaffold_89 . exon 135356 135416 . - . ID=Phyra83501.1;Parent=Phyra83501;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_89 ensembl protein_coding_gene 139967 141820 . + . ID=Phyra83502;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000042;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 139967 141820 . + . ID=Phyra83502;Parent=Phyra83502;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 139967 140002 . + 0 ID=Phyra83502;Parent=Phyra83502;rank=1 scaffold_89 . exon 139967 140002 . + . ID=Phyra83502.1;Parent=Phyra83502;constitutive=1;rank=1 scaffold_89 . CDS 140359 141039 . + 0 ID=Phyra83502;Parent=Phyra83502;rank=2 scaffold_89 . exon 140359 141039 . + . ID=Phyra83502.2;Parent=Phyra83502;constitutive=1;rank=2 scaffold_89 . CDS 141145 141287 . + 0 ID=Phyra83502;Parent=Phyra83502;rank=3 scaffold_89 . exon 141145 141287 . + . ID=Phyra83502.3;Parent=Phyra83502;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_89 . CDS 141495 141687 . + 0 ID=Phyra83502;Parent=Phyra83502;rank=4 scaffold_89 . exon 141495 141687 . + . ID=Phyra83502.4;Parent=Phyra83502;constitutive=1;ensembl_phase=2;rank=4 scaffold_89 . CDS 141800 141820 . + 0 ID=Phyra83502;Parent=Phyra83502;rank=5 scaffold_89 . exon 141800 141820 . + . ID=Phyra83502.5;Parent=Phyra83502;constitutive=1;rank=5 scaffold_89 ensembl protein_coding_gene 150900 151322 . + . ID=Phyra72123;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_89000002;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 150900 151322 . + . ID=Phyra72123;Parent=Phyra72123;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 150900 151322 . + 0 ID=Phyra72123;Parent=Phyra72123;rank=1 scaffold_89 . exon 150900 151322 . + . ID=Phyra72123.1;Parent=Phyra72123;constitutive=1;rank=1 scaffold_89 . biological_region 155082 155088 0.999 - . logic_name=eponine scaffold_89 . biological_region 155122 155123 0.999 - . logic_name=eponine scaffold_89 . biological_region 155841 155845 0.999 - . logic_name=eponine scaffold_89 . repeat_region 159859 159872 . ? . description=dust scaffold_89 ensembl protein_coding_gene 153559 156899 . + . ID=Phyra83504;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000044;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 153559 156899 . + . ID=Phyra83504;Parent=Phyra83504;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 153559 153630 . + 0 ID=Phyra83504;Parent=Phyra83504;rank=1 scaffold_89 . exon 153559 153630 . + . ID=Phyra83504.1;Parent=Phyra83504;constitutive=1;rank=1 scaffold_89 . CDS 153822 154716 . + 0 ID=Phyra83504;Parent=Phyra83504;rank=2 scaffold_89 . exon 153822 154716 . + . ID=Phyra83504.2;Parent=Phyra83504;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_89 . CDS 154784 155367 . + 0 ID=Phyra83504;Parent=Phyra83504;rank=3 scaffold_89 . exon 154784 155367 . + . ID=Phyra83504.3;Parent=Phyra83504;constitutive=1;ensembl_phase=1;rank=3 scaffold_89 . CDS 155452 155511 . + 0 ID=Phyra83504;Parent=Phyra83504;rank=4 scaffold_89 . exon 155452 155511 . + . ID=Phyra83504.4;Parent=Phyra83504;constitutive=1;rank=4 scaffold_89 . CDS 155584 156236 . + 0 ID=Phyra83504;Parent=Phyra83504;rank=5 scaffold_89 . exon 155584 156236 . + . ID=Phyra83504.5;Parent=Phyra83504;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_89 . CDS 156266 156899 . + 0 ID=Phyra83504;Parent=Phyra83504;rank=6 scaffold_89 . exon 156266 156899 . + . ID=Phyra83504.6;Parent=Phyra83504;constitutive=1;ensembl_phase=2;rank=6 scaffold_89 . repeat_region 163827 163881 . ? . description=trf scaffold_89 . repeat_region 171328 171357 . ? . description=trf scaffold_89 ensembl protein_coding_gene 163227 165653 . - . ID=Phyra83505;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000045;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 163227 165653 . - . ID=Phyra83505;Parent=Phyra83505;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 163227 165653 . - 0 ID=Phyra83505;Parent=Phyra83505;rank=1 scaffold_89 . exon 163227 165653 . - . ID=Phyra83505.1;Parent=Phyra83505;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 168532 169735 . - . ID=Phyra83506;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000046;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 168532 169735 . - . ID=Phyra83506;Parent=Phyra83506;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 168532 168681 . - 0 ID=Phyra83506;Parent=Phyra83506;rank=3 scaffold_89 . exon 168532 168681 . - . ID=Phyra83506.3;Parent=Phyra83506;constitutive=1;rank=3 scaffold_89 . CDS 168760 169581 . - 0 ID=Phyra83506;Parent=Phyra83506;rank=2 scaffold_89 . exon 168760 169581 . - . ID=Phyra83506.2;Parent=Phyra83506;constitutive=1;rank=2 scaffold_89 . CDS 169613 169735 . - 0 ID=Phyra83506;Parent=Phyra83506;rank=1 scaffold_89 . exon 169613 169735 . - . ID=Phyra83506.1;Parent=Phyra83506;constitutive=1;rank=1 scaffold_89 . biological_region 175578 175578 0.999 + . logic_name=eponine scaffold_89 . biological_region 176198 176204 0.999 + . logic_name=eponine scaffold_89 . biological_region 176235 176237 0.999 + . logic_name=eponine scaffold_89 . biological_region 176292 176296 0.999 + . logic_name=eponine scaffold_89 . biological_region 176575 176575 0.999 - . logic_name=eponine scaffold_89 . biological_region 176586 176590 0.999 + . logic_name=eponine scaffold_89 . biological_region 176628 176631 0.999 + . logic_name=eponine scaffold_89 . biological_region 176831 176834 0.999 - . logic_name=eponine scaffold_89 . biological_region 178073 178074 0.999 - . logic_name=eponine scaffold_89 ensembl protein_coding_gene 174718 176352 . + . ID=Phyra83507;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000047;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 174718 176352 . + . ID=Phyra83507;Parent=Phyra83507;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 174718 176352 . + 0 ID=Phyra83507;Parent=Phyra83507;rank=1 scaffold_89 . exon 174718 176352 . + . ID=Phyra83507.1;Parent=Phyra83507;constitutive=1;rank=1 scaffold_89 . repeat_region 183814 183873 . ? . description=trf scaffold_89 . repeat_region 185606 188483 . ? . description=dust scaffold_89 . repeat_region 188524 189214 . + . description=GypsyPi-1c_I-int scaffold_89 . repeat_region 189532 189809 . + . description=GypsyPi-1c_I-int scaffold_89 . repeat_region 190058 190077 . ? . description=dust scaffold_89 . repeat_region 190494 190543 . ? . description=dust scaffold_89 ensembl protein_coding_gene 188902 189156 . + . ID=Phyra54160;biotype=protein_coding;external_name=gwEuk.89.35.1;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 188902 189156 . + . ID=Phyra54160;Parent=Phyra54160;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 188902 189156 . + 0 ID=Phyra54160;Parent=Phyra54160;rank=1 scaffold_89 . exon 188902 189156 . + . ID=Phyra54160.1;Parent=Phyra54160;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 189826 191263 . - . ID=Phyra83508;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_89000048;logic_name=jgi_phyra1 scaffold_89 ensembl transcript 189826 191263 . - . ID=Phyra83508;Parent=Phyra83508;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_89 . CDS 189826 190023 . - 0 ID=Phyra83508;Parent=Phyra83508;rank=4 scaffold_89 . exon 189826 190023 . - . ID=Phyra83508.4;Parent=Phyra83508;constitutive=1;rank=4 scaffold_89 . CDS 190092 190219 . - 0 ID=Phyra83508;Parent=Phyra83508;rank=3 scaffold_89 . exon 190092 190219 . - . ID=Phyra83508.3;Parent=Phyra83508;constitutive=1;ensembl_phase=1;rank=3 scaffold_89 . CDS 190256 190453 . - 0 ID=Phyra83508;Parent=Phyra83508;rank=2 scaffold_89 . exon 190256 190453 . - . ID=Phyra83508.2;Parent=Phyra83508;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_89 . CDS 190687 191263 . - 0 ID=Phyra83508;Parent=Phyra83508;rank=1 scaffold_89 . exon 190687 191263 . - . ID=Phyra83508.1;Parent=Phyra83508;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_87 1 202019 scaffold_87 . repeat_region 1242 6136 . ? . description=dust scaffold_87 . biological_region 8600 8605 0.999 - . logic_name=eponine scaffold_87 ensembl protein_coding_gene 6486 9305 . - . ID=Phyra83340;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000001;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 6486 9305 . - . ID=Phyra83340;Parent=Phyra83340;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 6486 9305 . - 0 ID=Phyra83340;Parent=Phyra83340;rank=1 scaffold_87 . exon 6486 9305 . - . ID=Phyra83340.1;Parent=Phyra83340;constitutive=1;rank=1 scaffold_87 ensembl tRNA_gene 11243 11315 . - . ID=EPrPRAG00000000139;biotype=tRNA;description=tRNA-Arg for anticodon CCU [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_87 ensembl transcript 11243 11315 . - . ID=EPrPRAT00000000139;Parent=EPrPRAG00000000139;biotype=tRNA;logic_name=ncrna_eg scaffold_87 . exon 11243 11315 . - . ID=EPrPRAE00000000139;Parent=EPrPRAT00000000139;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 ensembl protein_coding_gene 15071 15493 . + . ID=Phyra83341;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000002;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 15071 15493 . + . ID=Phyra83341;Parent=Phyra83341;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 15071 15123 . + 0 ID=Phyra83341;Parent=Phyra83341;rank=1 scaffold_87 . exon 15071 15123 . + . ID=Phyra83341.1;Parent=Phyra83341;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 . CDS 15196 15493 . + 0 ID=Phyra83341;Parent=Phyra83341;rank=2 scaffold_87 . exon 15196 15493 . + . ID=Phyra83341.2;Parent=Phyra83341;constitutive=1;ensembl_phase=2;rank=2 scaffold_87 ensembl protein_coding_gene 15790 16490 . + . ID=Phyra83342;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000003;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 15790 16490 . + . ID=Phyra83342;Parent=Phyra83342;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 15790 16031 . + 0 ID=Phyra83342;Parent=Phyra83342;rank=1 scaffold_87 . exon 15790 16031 . + . ID=Phyra83342.1;Parent=Phyra83342;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 . CDS 16108 16192 . + 0 ID=Phyra83342;Parent=Phyra83342;rank=2 scaffold_87 . exon 16108 16192 . + . ID=Phyra83342.2;Parent=Phyra83342;constitutive=1;ensembl_phase=2;rank=2 scaffold_87 . CDS 16272 16340 . + 0 ID=Phyra83342;Parent=Phyra83342;rank=3 scaffold_87 . exon 16272 16340 . + . ID=Phyra83342.3;Parent=Phyra83342;constitutive=1;rank=3 scaffold_87 . CDS 16413 16490 . + 0 ID=Phyra83342;Parent=Phyra83342;rank=4 scaffold_87 . exon 16413 16490 . + . ID=Phyra83342.4;Parent=Phyra83342;constitutive=1;rank=4 scaffold_87 ensembl protein_coding_gene 16785 23063 . + . ID=Phyra83343;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000004;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 16785 23063 . + . ID=Phyra83343;Parent=Phyra83343;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 16785 21713 . + 0 ID=Phyra83343;Parent=Phyra83343;rank=1 scaffold_87 . exon 16785 21713 . + . ID=Phyra83343.1;Parent=Phyra83343;constitutive=1;rank=1 scaffold_87 . CDS 22043 22681 . + 0 ID=Phyra83343;Parent=Phyra83343;rank=2 scaffold_87 . CDS 22751 22849 . + 0 ID=Phyra83343;Parent=Phyra83343;rank=3 scaffold_87 . CDS 22903 23063 . + 0 ID=Phyra83343;Parent=Phyra83343;rank=4 scaffold_87 . biological_region 24178 24178 0.999 + . logic_name=eponine scaffold_87 . biological_region 24408 24411 0.999 - . logic_name=eponine scaffold_87 . biological_region 24438 24440 0.999 + . logic_name=eponine scaffold_87 . biological_region 24463 24466 0.999 + . logic_name=eponine scaffold_87 . biological_region 26308 26311 0.999 - . logic_name=eponine scaffold_87 ensembl protein_coding_gene 23182 23517 . - . ID=Phyra53940;biotype=protein_coding;external_name=gwEuk.87.13.1;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 23182 23517 . - . ID=Phyra53940;Parent=Phyra53940;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 23182 23517 . - 0 ID=Phyra53940;Parent=Phyra53940;rank=1 scaffold_87 . exon 23182 23517 . - . ID=Phyra53940.1;Parent=Phyra53940;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 23912 24487 . - . ID=Phyra53946;biotype=protein_coding;external_name=gwEuk.87.19.1;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 23912 24487 . - . ID=Phyra53946;Parent=Phyra53946;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 23912 24487 . - 0 ID=Phyra53946;Parent=Phyra53946;rank=1 scaffold_87 . exon 23912 24487 . - . ID=Phyra53946.1;Parent=Phyra53946;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 27697 28104 . - . ID=Phyra72106;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_87000003;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 27697 28104 . - . ID=Phyra72106;Parent=Phyra72106;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 27697 28104 . - 0 ID=Phyra72106;Parent=Phyra72106;rank=1 scaffold_87 . exon 27697 28104 . - . ID=Phyra72106.1;Parent=Phyra72106;constitutive=1;rank=1 scaffold_87 . exon 22043 22681 . + . ID=Phyra83343.2;Parent=Phyra83343;constitutive=1;rank=2 scaffold_87 . exon 22751 22849 . + . ID=Phyra83343.3;Parent=Phyra83343;constitutive=1;rank=3 scaffold_87 . exon 22903 23063 . + . ID=Phyra83343.4;Parent=Phyra83343;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_87 ensembl protein_coding_gene 28429 29860 . + . ID=Phyra83347;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000008;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 28429 29860 . + . ID=Phyra83347;Parent=Phyra83347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 28429 28471 . + 0 ID=Phyra83347;Parent=Phyra83347;rank=1 scaffold_87 . exon 28429 28471 . + . ID=Phyra83347.1;Parent=Phyra83347;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . CDS 28561 28688 . + 0 ID=Phyra83347;Parent=Phyra83347;rank=2 scaffold_87 . exon 28561 28688 . + . ID=Phyra83347.2;Parent=Phyra83347;constitutive=1;ensembl_phase=1;rank=2 scaffold_87 . CDS 28766 28819 . + 0 ID=Phyra83347;Parent=Phyra83347;rank=3 scaffold_87 . exon 28766 28819 . + . ID=Phyra83347.3;Parent=Phyra83347;constitutive=1;rank=3 scaffold_87 . CDS 28899 28957 . + 0 ID=Phyra83347;Parent=Phyra83347;rank=4 scaffold_87 . CDS 29044 29165 . + 0 ID=Phyra83347;Parent=Phyra83347;rank=5 scaffold_87 . CDS 29246 29669 . + 0 ID=Phyra83347;Parent=Phyra83347;rank=6 scaffold_87 . CDS 29734 29860 . + 0 ID=Phyra83347;Parent=Phyra83347;rank=7 scaffold_87 . repeat_region 32062 32102 . ? . description=trf scaffold_87 . repeat_region 34100 34119 . ? . description=trf scaffold_87 . repeat_region 37719 37749 . ? . description=dust scaffold_87 ensembl protein_coding_gene 32845 33720 . - . ID=Phyra72107;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_87000004;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 32845 33720 . - . ID=Phyra72107;Parent=Phyra72107;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 32845 33720 . - 0 ID=Phyra72107;Parent=Phyra72107;rank=1 scaffold_87 . exon 32845 33720 . - . ID=Phyra72107.1;Parent=Phyra72107;constitutive=1;rank=1 scaffold_87 . exon 28899 28957 . + . ID=Phyra83347.4;Parent=Phyra83347;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_87 . exon 29044 29165 . + . ID=Phyra83347.5;Parent=Phyra83347;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_87 . exon 29246 29669 . + . ID=Phyra83347.6;Parent=Phyra83347;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_87 . exon 29734 29860 . + . ID=Phyra83347.7;Parent=Phyra83347;constitutive=1;ensembl_phase=2;rank=7 scaffold_87 ensembl protein_coding_gene 29996 32743 . + . ID=Phyra83348;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000009;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 29996 32743 . + . ID=Phyra83348;Parent=Phyra83348;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 29996 30221 . + 0 ID=Phyra83348;Parent=Phyra83348;rank=1 scaffold_87 . exon 29996 30221 . + . ID=Phyra83348.1;Parent=Phyra83348;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . CDS 30294 30516 . + 0 ID=Phyra83348;Parent=Phyra83348;rank=2 scaffold_87 . exon 30294 30516 . + . ID=Phyra83348.2;Parent=Phyra83348;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_87 . CDS 30606 30620 . + 0 ID=Phyra83348;Parent=Phyra83348;rank=3 scaffold_87 . exon 30606 30620 . + . ID=Phyra83348.3;Parent=Phyra83348;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_87 . CDS 30699 30833 . + 0 ID=Phyra83348;Parent=Phyra83348;rank=4 scaffold_87 . exon 30699 30833 . + . ID=Phyra83348.4;Parent=Phyra83348;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_87 . CDS 30919 30946 . + 0 ID=Phyra83348;Parent=Phyra83348;rank=5 scaffold_87 . exon 30919 30946 . + . ID=Phyra83348.5;Parent=Phyra83348;constitutive=1;ensembl_phase=2;rank=5 scaffold_87 . CDS 31121 31295 . + 0 ID=Phyra83348;Parent=Phyra83348;rank=6 scaffold_87 . exon 31121 31295 . + . ID=Phyra83348.6;Parent=Phyra83348;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_87 . CDS 31554 32743 . + 0 ID=Phyra83348;Parent=Phyra83348;rank=7 scaffold_87 . exon 31554 32743 . + . ID=Phyra83348.7;Parent=Phyra83348;constitutive=1;ensembl_phase=1;rank=7 scaffold_87 ensembl protein_coding_gene 34090 34739 . + . ID=Phyra83350;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000011;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 34090 34739 . + . ID=Phyra83350;Parent=Phyra83350;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 34090 34140 . + 0 ID=Phyra83350;Parent=Phyra83350;rank=1 scaffold_87 . exon 34090 34140 . + . ID=Phyra83350.1;Parent=Phyra83350;constitutive=1;rank=1 scaffold_87 . CDS 34229 34328 . + 0 ID=Phyra83350;Parent=Phyra83350;rank=2 scaffold_87 . exon 34229 34328 . + . ID=Phyra83350.2;Parent=Phyra83350;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_87 . CDS 34399 34739 . + 0 ID=Phyra83350;Parent=Phyra83350;rank=3 scaffold_87 . exon 34399 34739 . + . ID=Phyra83350.3;Parent=Phyra83350;constitutive=1;ensembl_phase=1;rank=3 scaffold_87 ensembl protein_coding_gene 35052 36292 . - . ID=Phyra83351;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000012;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 35052 36292 . - . ID=Phyra83351;Parent=Phyra83351;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 35052 35218 . - 0 ID=Phyra83351;Parent=Phyra83351;rank=5 scaffold_87 . exon 35052 35218 . - . ID=Phyra83351.5;Parent=Phyra83351;constitutive=1;ensembl_phase=1;rank=5 scaffold_87 . CDS 35297 35432 . - 0 ID=Phyra83351;Parent=Phyra83351;rank=4 scaffold_87 . exon 35297 35432 . - . ID=Phyra83351.4;Parent=Phyra83351;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_87 . CDS 35501 35839 . - 0 ID=Phyra83351;Parent=Phyra83351;rank=3 scaffold_87 . exon 35501 35839 . - . ID=Phyra83351.3;Parent=Phyra83351;constitutive=1;rank=3 scaffold_87 . CDS 35909 36064 . - 0 ID=Phyra83351;Parent=Phyra83351;rank=2 scaffold_87 . exon 35909 36064 . - . ID=Phyra83351.2;Parent=Phyra83351;constitutive=1;rank=2 scaffold_87 . CDS 36137 36292 . - 0 ID=Phyra83351;Parent=Phyra83351;rank=1 scaffold_87 . exon 36137 36292 . - . ID=Phyra83351.1;Parent=Phyra83351;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 36595 37683 . + . ID=Phyra96582;biotype=protein_coding;external_name=C_scaffold_87000002;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 36595 37683 . + . ID=Phyra96582;Parent=Phyra96582;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 36595 36766 . + 0 ID=Phyra96582;Parent=Phyra96582;rank=1 scaffold_87 . exon 36595 36766 . + . ID=Phyra96582.1;Parent=Phyra96582;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . CDS 36849 36955 . + 0 ID=Phyra96582;Parent=Phyra96582;rank=2 scaffold_87 . exon 36849 36955 . + . ID=Phyra96582.2;Parent=Phyra96582;constitutive=1;ensembl_phase=1;rank=2 scaffold_87 . CDS 37027 37117 . + 0 ID=Phyra96582;Parent=Phyra96582;rank=3 scaffold_87 . exon 37027 37117 . + . ID=Phyra96582.3;Parent=Phyra96582;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_87 . CDS 37189 37544 . + 0 ID=Phyra96582;Parent=Phyra96582;rank=4 scaffold_87 . exon 37189 37544 . + . ID=Phyra96582.4;Parent=Phyra96582;constitutive=1;ensembl_phase=1;rank=4 scaffold_87 . CDS 37681 37683 . + 0 ID=Phyra96582;Parent=Phyra96582;rank=5 scaffold_87 . exon 37681 37683 . + . ID=Phyra96582.5;Parent=Phyra96582;constitutive=1;rank=5 scaffold_87 . biological_region 41992 41993 0.999 + . logic_name=eponine scaffold_87 . biological_region 43215 43217 0.999 + . logic_name=eponine scaffold_87 . biological_region 43279 43284 0.999 + . logic_name=eponine scaffold_87 . biological_region 43304 43306 0.999 + . logic_name=eponine scaffold_87 . biological_region 47344 47346 0.999 - . logic_name=eponine scaffold_87 . biological_region 47366 47371 0.999 - . logic_name=eponine scaffold_87 . biological_region 47433 47435 0.999 - . logic_name=eponine scaffold_87 ensembl protein_coding_gene 40630 41211 . + . ID=Phyra53958;biotype=protein_coding;external_name=gwEuk.87.31.1;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 40630 41211 . + . ID=Phyra53958;Parent=Phyra53958;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 40630 40803 . + 0 ID=Phyra53958;Parent=Phyra53958;rank=1 scaffold_87 . exon 40630 40803 . + . ID=Phyra53958.1;Parent=Phyra53958;constitutive=1;rank=1 scaffold_87 . CDS 40867 41211 . + 0 ID=Phyra53958;Parent=Phyra53958;rank=2 scaffold_87 . exon 40867 41211 . + . ID=Phyra53958.2;Parent=Phyra53958;constitutive=1;rank=2 scaffold_87 ensembl protein_coding_gene 38763 40232 . - . ID=Phyra83353;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000014;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 38763 40232 . - . ID=Phyra83353;Parent=Phyra83353;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 38763 38822 . - 0 ID=Phyra83353;Parent=Phyra83353;rank=6 scaffold_87 . exon 38763 38822 . - . ID=Phyra83353.6;Parent=Phyra83353;constitutive=1;rank=6 scaffold_87 . CDS 38896 38970 . - 0 ID=Phyra83353;Parent=Phyra83353;rank=5 scaffold_87 . exon 38896 38970 . - . ID=Phyra83353.5;Parent=Phyra83353;constitutive=1;rank=5 scaffold_87 . CDS 39042 39185 . - 0 ID=Phyra83353;Parent=Phyra83353;rank=4 scaffold_87 . exon 39042 39185 . - . ID=Phyra83353.4;Parent=Phyra83353;constitutive=1;rank=4 scaffold_87 . CDS 39242 39359 . - 0 ID=Phyra83353;Parent=Phyra83353;rank=3 scaffold_87 . exon 39242 39359 . - . ID=Phyra83353.3;Parent=Phyra83353;constitutive=1;ensembl_phase=2;rank=3 scaffold_87 . CDS 39431 39546 . - 0 ID=Phyra83353;Parent=Phyra83353;rank=2 scaffold_87 . exon 39431 39546 . - . ID=Phyra83353.2;Parent=Phyra83353;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_87 . CDS 39624 40232 . - 0 ID=Phyra83353;Parent=Phyra83353;rank=1 scaffold_87 . exon 39624 40232 . - . ID=Phyra83353.1;Parent=Phyra83353;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 42441 45349 . + . ID=Phyra83355;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000016;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 42441 45349 . + . ID=Phyra83355;Parent=Phyra83355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 42441 44436 . + 0 ID=Phyra83355;Parent=Phyra83355;rank=1 scaffold_87 . exon 42441 44436 . + . ID=Phyra83355.1;Parent=Phyra83355;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . CDS 44515 45202 . + 0 ID=Phyra83355;Parent=Phyra83355;rank=2 scaffold_87 . exon 44515 45202 . + . ID=Phyra83355.2;Parent=Phyra83355;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_87 . CDS 45340 45349 . + 0 ID=Phyra83355;Parent=Phyra83355;rank=3 scaffold_87 . exon 45340 45349 . + . ID=Phyra83355.3;Parent=Phyra83355;constitutive=1;ensembl_phase=2;rank=3 scaffold_87 ensembl protein_coding_gene 45461 48235 . - . ID=Phyra83356;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000017;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 45461 48235 . - . ID=Phyra83356;Parent=Phyra83356;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 45461 48235 . - 0 ID=Phyra83356;Parent=Phyra83356;rank=1 scaffold_87 . exon 45461 48235 . - . ID=Phyra83356.1;Parent=Phyra83356;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 53268 53877 . - . ID=Phyra53963;biotype=protein_coding;external_name=gwEuk.87.36.1;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 53268 53877 . - . ID=Phyra53963;Parent=Phyra53963;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 53268 53340 . - 0 ID=Phyra53963;Parent=Phyra53963;rank=3 scaffold_87 . exon 53268 53340 . - . ID=Phyra53963.3;Parent=Phyra53963;constitutive=1;ensembl_phase=2;rank=3 scaffold_87 . CDS 53407 53687 . - 0 ID=Phyra53963;Parent=Phyra53963;rank=2 scaffold_87 . exon 53407 53687 . - . ID=Phyra53963.2;Parent=Phyra53963;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_87 . CDS 53779 53877 . - 0 ID=Phyra53963;Parent=Phyra53963;rank=1 scaffold_87 . exon 53779 53877 . - . ID=Phyra53963.1;Parent=Phyra53963;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 56789 57342 . - . ID=Phyra72108;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_87000005;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 56789 57342 . - . ID=Phyra72108;Parent=Phyra72108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 56789 56824 . - 0 ID=Phyra72108;Parent=Phyra72108;rank=3 scaffold_87 . exon 56789 56824 . - . ID=Phyra72108.3;Parent=Phyra72108;constitutive=1;rank=3 scaffold_87 . CDS 56849 57250 . - 0 ID=Phyra72108;Parent=Phyra72108;rank=2 scaffold_87 . exon 56849 57250 . - . ID=Phyra72108.2;Parent=Phyra72108;constitutive=1;rank=2 scaffold_87 . CDS 57322 57342 . - 0 ID=Phyra72108;Parent=Phyra72108;rank=1 scaffold_87 . exon 57322 57342 . - . ID=Phyra72108.1;Parent=Phyra72108;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 54083 56594 . - . ID=Phyra83358;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000019;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 54083 56594 . - . ID=Phyra83358;Parent=Phyra83358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 54083 54604 . - 0 ID=Phyra83358;Parent=Phyra83358;rank=5 scaffold_87 . exon 54083 54604 . - . ID=Phyra83358.5;Parent=Phyra83358;constitutive=1;rank=5 scaffold_87 . CDS 54661 54957 . - 0 ID=Phyra83358;Parent=Phyra83358;rank=4 scaffold_87 . exon 54661 54957 . - . ID=Phyra83358.4;Parent=Phyra83358;constitutive=1;rank=4 scaffold_87 . CDS 55004 56232 . - 0 ID=Phyra83358;Parent=Phyra83358;rank=3 scaffold_87 . exon 55004 56232 . - . ID=Phyra83358.3;Parent=Phyra83358;constitutive=1;ensembl_phase=1;rank=3 scaffold_87 . CDS 56306 56364 . - 0 ID=Phyra83358;Parent=Phyra83358;rank=2 scaffold_87 . exon 56306 56364 . - . ID=Phyra83358.2;Parent=Phyra83358;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_87 . CDS 56437 56594 . - 0 ID=Phyra83358;Parent=Phyra83358;rank=1 scaffold_87 . exon 56437 56594 . - . ID=Phyra83358.1;Parent=Phyra83358;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 . repeat_region 59529 59578 . ? . description=dust scaffold_87 . repeat_region 60892 60919 . ? . description=trf scaffold_87 . repeat_region 61173 61455 . ? . description=dust scaffold_87 . repeat_region 64082 64131 . ? . description=dust scaffold_87 . repeat_region 64488 64515 . ? . description=trf scaffold_87 ensembl protein_coding_gene 62558 63763 . - . ID=Phyra53977;biotype=protein_coding;external_name=gwEuk.87.50.1;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 62558 63763 . - . ID=Phyra53977;Parent=Phyra53977;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 62558 63378 . - 0 ID=Phyra53977;Parent=Phyra53977;rank=3 scaffold_87 . exon 62558 63378 . - . ID=Phyra53977.3;Parent=Phyra53977;constitutive=1;ensembl_phase=1;rank=3 scaffold_87 . CDS 63461 63542 . - 0 ID=Phyra53977;Parent=Phyra53977;rank=2 scaffold_87 . exon 63461 63542 . - . ID=Phyra53977.2;Parent=Phyra53977;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_87 . CDS 63659 63763 . - 0 ID=Phyra53977;Parent=Phyra53977;rank=1 scaffold_87 . exon 63659 63763 . - . ID=Phyra53977.1;Parent=Phyra53977;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 60538 60741 . - . ID=Phyra53984;biotype=protein_coding;external_name=gwEuk.87.57.1;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 60538 60741 . - . ID=Phyra53984;Parent=Phyra53984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 60538 60741 . - 0 ID=Phyra53984;Parent=Phyra53984;rank=1 scaffold_87 . exon 60538 60741 . - . ID=Phyra53984.1;Parent=Phyra53984;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 58278 58669 . - . ID=Phyra83360;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000021;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 58278 58669 . - . ID=Phyra83360;Parent=Phyra83360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 58278 58444 . - 0 ID=Phyra83360;Parent=Phyra83360;rank=2 scaffold_87 . exon 58278 58444 . - . ID=Phyra83360.2;Parent=Phyra83360;constitutive=1;ensembl_phase=1;rank=2 scaffold_87 . CDS 58510 58669 . - 0 ID=Phyra83360;Parent=Phyra83360;rank=1 scaffold_87 . exon 58510 58669 . - . ID=Phyra83360.1;Parent=Phyra83360;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 ensembl protein_coding_gene 60980 62298 . - . ID=Phyra83362;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000023;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 60980 62298 . - . ID=Phyra83362;Parent=Phyra83362;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 60980 61041 . - 0 ID=Phyra83362;Parent=Phyra83362;rank=2 scaffold_87 . exon 60980 61041 . - . ID=Phyra83362.2;Parent=Phyra83362;constitutive=1;ensembl_phase=1;rank=2 scaffold_87 . CDS 61462 62296 . - 0 ID=Phyra83362;Parent=Phyra83362;rank=1 scaffold_87 . exon 61462 62298 . - . ID=Phyra83362.1;Parent=Phyra83362;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_87 ensembl protein_coding_gene 64176 67464 . - . ID=Phyra83364;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000025;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 64176 67464 . - . ID=Phyra83364;Parent=Phyra83364;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 64176 64388 . - 0 ID=Phyra83364;Parent=Phyra83364;rank=5 scaffold_87 . exon 64176 64388 . - . ID=Phyra83364.5;Parent=Phyra83364;constitutive=1;rank=5 scaffold_87 . CDS 64621 66956 . - 0 ID=Phyra83364;Parent=Phyra83364;rank=4 scaffold_87 . exon 64621 66956 . - . ID=Phyra83364.4;Parent=Phyra83364;constitutive=1;ensembl_phase=1;rank=4 scaffold_87 . CDS 67039 67204 . - 0 ID=Phyra83364;Parent=Phyra83364;rank=3 scaffold_87 . exon 67039 67204 . - . ID=Phyra83364.3;Parent=Phyra83364;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_87 . CDS 67237 67353 . - 0 ID=Phyra83364;Parent=Phyra83364;rank=2 scaffold_87 . exon 67237 67353 . - . ID=Phyra83364.2;Parent=Phyra83364;constitutive=1;rank=2 scaffold_87 . CDS 67438 67464 . - 0 ID=Phyra83364;Parent=Phyra83364;rank=1 scaffold_87 . biological_region 71500 71502 0.999 - . logic_name=eponine scaffold_87 . biological_region 72079 72082 0.999 + . logic_name=eponine scaffold_87 . biological_region 75130 75130 0.999 - . logic_name=eponine scaffold_87 . exon 67438 67464 . - . ID=Phyra83364.1;Parent=Phyra83364;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 69752 70822 . - . ID=Phyra83365;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000026;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 69752 70822 . - . ID=Phyra83365;Parent=Phyra83365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 69752 70822 . - 0 ID=Phyra83365;Parent=Phyra83365;rank=1 scaffold_87 . exon 69752 70822 . - . ID=Phyra83365.1;Parent=Phyra83365;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 71009 72395 . + . ID=Phyra83366;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000027;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 71009 72395 . + . ID=Phyra83366;Parent=Phyra83366;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 71009 71034 . + 0 ID=Phyra83366;Parent=Phyra83366;rank=1 scaffold_87 . exon 71009 71034 . + . ID=Phyra83366.1;Parent=Phyra83366;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 . CDS 71154 71300 . + 0 ID=Phyra83366;Parent=Phyra83366;rank=2 scaffold_87 . exon 71154 71300 . + . ID=Phyra83366.2;Parent=Phyra83366;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_87 . CDS 71365 71599 . + 0 ID=Phyra83366;Parent=Phyra83366;rank=3 scaffold_87 . exon 71365 71599 . + . ID=Phyra83366.3;Parent=Phyra83366;constitutive=1;ensembl_phase=2;rank=3 scaffold_87 . CDS 71665 71931 . + 0 ID=Phyra83366;Parent=Phyra83366;rank=4 scaffold_87 . exon 71665 71931 . + . ID=Phyra83366.4;Parent=Phyra83366;constitutive=1;rank=4 scaffold_87 . CDS 72003 72395 . + 0 ID=Phyra83366;Parent=Phyra83366;rank=5 scaffold_87 . exon 72003 72395 . + . ID=Phyra83366.5;Parent=Phyra83366;constitutive=1;rank=5 scaffold_87 ensembl protein_coding_gene 72976 74601 . + . ID=Phyra83367;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000028;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 72976 74601 . + . ID=Phyra83367;Parent=Phyra83367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 72976 74601 . + 0 ID=Phyra83367;Parent=Phyra83367;rank=1 scaffold_87 . exon 72976 74601 . + . ID=Phyra83367.1;Parent=Phyra83367;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 74739 76828 . - . ID=Phyra83368;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000029;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 74739 76828 . - . ID=Phyra83368;Parent=Phyra83368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 74739 75581 . - 0 ID=Phyra83368;Parent=Phyra83368;rank=5 scaffold_87 . exon 74739 75581 . - . ID=Phyra83368.5;Parent=Phyra83368;constitutive=1;rank=5 scaffold_87 . CDS 75651 76208 . - 0 ID=Phyra83368;Parent=Phyra83368;rank=4 scaffold_87 . exon 75651 76208 . - . ID=Phyra83368.4;Parent=Phyra83368;constitutive=1;rank=4 scaffold_87 . CDS 76270 76369 . - 0 ID=Phyra83368;Parent=Phyra83368;rank=3 scaffold_87 . exon 76270 76369 . - . ID=Phyra83368.3;Parent=Phyra83368;constitutive=1;ensembl_phase=2;rank=3 scaffold_87 . CDS 76437 76549 . - 0 ID=Phyra83368;Parent=Phyra83368;rank=2 scaffold_87 . exon 76437 76549 . - . ID=Phyra83368.2;Parent=Phyra83368;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_87 . CDS 76607 76828 . - 0 ID=Phyra83368;Parent=Phyra83368;rank=1 scaffold_87 . exon 76607 76828 . - . ID=Phyra83368.1;Parent=Phyra83368;constitutive=1;rank=1 scaffold_87 . repeat_region 77609 77647 . ? . description=trf scaffold_87 . repeat_region 82239 82262 . ? . description=trf scaffold_87 . repeat_region 82316 82373 . ? . description=trf scaffold_87 . repeat_region 82345 82412 . ? . description=trf scaffold_87 . repeat_region 82345 82454 . ? . description=trf scaffold_87 . repeat_region 85682 85709 . ? . description=trf scaffold_87 . repeat_region 85682 85709 . ? . description=dust scaffold_87 . repeat_region 85840 85874 . ? . description=trf scaffold_87 ensembl protein_coding_gene 78542 79095 . + . ID=Phyra72111;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_87000008;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 78542 79095 . + . ID=Phyra72111;Parent=Phyra72111;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 78542 78562 . + 0 ID=Phyra72111;Parent=Phyra72111;rank=1 scaffold_87 . exon 78542 78562 . + . ID=Phyra72111.1;Parent=Phyra72111;constitutive=1;rank=1 scaffold_87 . CDS 78634 79095 . + 0 ID=Phyra72111;Parent=Phyra72111;rank=2 scaffold_87 . exon 78634 79095 . + . ID=Phyra72111.2;Parent=Phyra72111;constitutive=1;rank=2 scaffold_87 ensembl protein_coding_gene 77005 77419 . + . ID=Phyra83369;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000030;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 77005 77419 . + . ID=Phyra83369;Parent=Phyra83369;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 77005 77182 . + 0 ID=Phyra83369;Parent=Phyra83369;rank=1 scaffold_87 . exon 77005 77182 . + . ID=Phyra83369.1;Parent=Phyra83369;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . CDS 77256 77419 . + 0 ID=Phyra83369;Parent=Phyra83369;rank=2 scaffold_87 . exon 77256 77419 . + . ID=Phyra83369.2;Parent=Phyra83369;constitutive=1;ensembl_phase=1;rank=2 scaffold_87 ensembl protein_coding_gene 82274 83590 . + . ID=Phyra83371;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000032;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 82274 83590 . + . ID=Phyra83371;Parent=Phyra83371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 82274 83590 . + 0 ID=Phyra83371;Parent=Phyra83371;rank=1 scaffold_87 . exon 82274 83590 . + . ID=Phyra83371.1;Parent=Phyra83371;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 84307 86566 . - . ID=Phyra83372;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000033;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 84307 86566 . - . ID=Phyra83372;Parent=Phyra83372;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 84307 84575 . - 0 ID=Phyra83372;Parent=Phyra83372;rank=8 scaffold_87 . exon 84307 84575 . - . ID=Phyra83372.8;Parent=Phyra83372;constitutive=1;ensembl_phase=1;rank=8 scaffold_87 . CDS 84750 84851 . - 0 ID=Phyra83372;Parent=Phyra83372;rank=7 scaffold_87 . exon 84750 84851 . - . ID=Phyra83372.7;Parent=Phyra83372;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_87 . CDS 84927 85030 . - 0 ID=Phyra83372;Parent=Phyra83372;rank=6 scaffold_87 . exon 84927 85030 . - . ID=Phyra83372.6;Parent=Phyra83372;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_87 . CDS 85110 85177 . - 0 ID=Phyra83372;Parent=Phyra83372;rank=5 scaffold_87 . exon 85110 85177 . - . ID=Phyra83372.5;Parent=Phyra83372;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_87 . CDS 85215 85225 . - 0 ID=Phyra83372;Parent=Phyra83372;rank=4 scaffold_87 . exon 85215 85225 . - . ID=Phyra83372.4;Parent=Phyra83372;constitutive=1;ensembl_phase=1;rank=4 scaffold_87 . CDS 85277 85490 . - 0 ID=Phyra83372;Parent=Phyra83372;rank=3 scaffold_87 . exon 85277 85490 . - . ID=Phyra83372.3;Parent=Phyra83372;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_87 . CDS 85576 85770 . - 0 ID=Phyra83372;Parent=Phyra83372;rank=2 scaffold_87 . exon 85576 85770 . - . ID=Phyra83372.2;Parent=Phyra83372;constitutive=1;rank=2 scaffold_87 . CDS 86081 86566 . - 0 ID=Phyra83372;Parent=Phyra83372;rank=1 scaffold_87 . exon 86081 86566 . - . ID=Phyra83372.1;Parent=Phyra83372;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 87434 88141 . + . ID=Phyra83373;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000034;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 87434 88141 . + . ID=Phyra83373;Parent=Phyra83373;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 87434 88141 . + 0 ID=Phyra83373;Parent=Phyra83373;rank=1 scaffold_87 . exon 87434 88141 . + . ID=Phyra83373.1;Parent=Phyra83373;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 91702 93192 . + . ID=Phyra83374;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000035;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 91702 93192 . + . ID=Phyra83374;Parent=Phyra83374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 91702 93192 . + 0 ID=Phyra83374;Parent=Phyra83374;rank=1 scaffold_87 . exon 91702 93192 . + . ID=Phyra83374.1;Parent=Phyra83374;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 93857 96982 . - . ID=Phyra83375;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000036;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 93857 96982 . - . ID=Phyra83375;Parent=Phyra83375;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 93857 96982 . - 0 ID=Phyra83375;Parent=Phyra83375;rank=1 scaffold_87 . exon 93857 96982 . - . ID=Phyra83375.1;Parent=Phyra83375;constitutive=1;rank=1 scaffold_87 . biological_region 96998 96999 0.999 + . logic_name=eponine scaffold_87 . repeat_region 97480 97488 . ? . description=dust scaffold_87 . biological_region 97571 97572 0.999 + . logic_name=eponine scaffold_87 . biological_region 97704 97705 0.999 - . logic_name=eponine scaffold_87 . biological_region 97719 97724 0.999 + . logic_name=eponine scaffold_87 . biological_region 100519 100524 0.999 + . logic_name=eponine scaffold_87 . repeat_region 100911 100918 . ? . description=dust scaffold_87 . repeat_region 100985 101027 . ? . description=trf scaffold_87 . biological_region 102389 102393 0.999 + . logic_name=eponine scaffold_87 ensembl protein_coding_gene 103660 105259 . + . ID=Phyra54004;biotype=protein_coding;external_name=gwEuk.87.77.1;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 103660 105259 . + . ID=Phyra54004;Parent=Phyra54004;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 103660 103719 . + 0 ID=Phyra54004;Parent=Phyra54004;rank=1 scaffold_87 . exon 103660 103719 . + . ID=Phyra54004.1;Parent=Phyra54004;constitutive=1;rank=1 scaffold_87 . CDS 103790 105259 . + 0 ID=Phyra54004;Parent=Phyra54004;rank=2 scaffold_87 . exon 103790 105259 . + . ID=Phyra54004.2;Parent=Phyra54004;constitutive=1;rank=2 scaffold_87 ensembl protein_coding_gene 97603 100776 . + . ID=Phyra83376;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000037;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 97603 100776 . + . ID=Phyra83376;Parent=Phyra83376;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 97603 100776 . + 0 ID=Phyra83376;Parent=Phyra83376;rank=1 scaffold_87 . exon 97603 100776 . + . ID=Phyra83376.1;Parent=Phyra83376;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 100955 102782 . - . ID=Phyra96585;biotype=protein_coding;external_name=C_scaffold_87000005;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 100955 102782 . - . ID=Phyra96585;Parent=Phyra96585;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 100955 100962 . - 0 ID=Phyra96585;Parent=Phyra96585;rank=4 scaffold_87 . exon 100955 100962 . - . ID=Phyra96585.4;Parent=Phyra96585;constitutive=1;ensembl_phase=1;rank=4 scaffold_87 . CDS 101045 101475 . - 0 ID=Phyra96585;Parent=Phyra96585;rank=3 scaffold_87 . exon 101045 101475 . - . ID=Phyra96585.3;Parent=Phyra96585;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_87 . CDS 101506 102545 . - 0 ID=Phyra96585;Parent=Phyra96585;rank=2 scaffold_87 . exon 101506 102545 . - . ID=Phyra96585.2;Parent=Phyra96585;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_87 . CDS 102612 102782 . - 0 ID=Phyra96585;Parent=Phyra96585;rank=1 scaffold_87 . exon 102612 102782 . - . ID=Phyra96585.1;Parent=Phyra96585;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 106006 107635 . - . ID=Phyra54008;biotype=protein_coding;external_name=gwEuk.87.81.1;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 106006 107635 . - . ID=Phyra54008;Parent=Phyra54008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 106006 107496 . - 0 ID=Phyra54008;Parent=Phyra54008;rank=2 scaffold_87 . exon 106006 107496 . - . ID=Phyra54008.2;Parent=Phyra54008;constitutive=1;rank=2 scaffold_87 . CDS 107555 107635 . - 0 ID=Phyra54008;Parent=Phyra54008;rank=1 scaffold_87 . exon 107555 107635 . - . ID=Phyra54008.1;Parent=Phyra54008;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 107785 110297 . + . ID=Phyra96588;biotype=protein_coding;external_name=C_scaffold_87000008;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 107785 110297 . + . ID=Phyra96588;Parent=Phyra96588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 107785 107944 . + 0 ID=Phyra96588;Parent=Phyra96588;rank=1 scaffold_87 . exon 107785 107944 . + . ID=Phyra96588.1;Parent=Phyra96588;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . CDS 108004 108398 . + 0 ID=Phyra96588;Parent=Phyra96588;rank=2 scaffold_87 . exon 108004 108398 . + . ID=Phyra96588.2;Parent=Phyra96588;constitutive=1;ensembl_phase=1;rank=2 scaffold_87 . CDS 108463 108502 . + 0 ID=Phyra96588;Parent=Phyra96588;rank=3 scaffold_87 . exon 108463 108502 . + . ID=Phyra96588.3;Parent=Phyra96588;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_87 . CDS 108565 108650 . + 0 ID=Phyra96588;Parent=Phyra96588;rank=4 scaffold_87 . exon 108565 108650 . + . ID=Phyra96588.4;Parent=Phyra96588;constitutive=1;ensembl_phase=1;rank=4 scaffold_87 . CDS 108716 108770 . + 0 ID=Phyra96588;Parent=Phyra96588;rank=5 scaffold_87 . exon 108716 108770 . + . ID=Phyra96588.5;Parent=Phyra96588;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_87 . CDS 108838 108899 . + 0 ID=Phyra96588;Parent=Phyra96588;rank=6 scaffold_87 . exon 108838 108899 . + . ID=Phyra96588.6;Parent=Phyra96588;constitutive=1;ensembl_phase=1;rank=6 scaffold_87 . CDS 108966 109053 . + 0 ID=Phyra96588;Parent=Phyra96588;rank=7 scaffold_87 . exon 108966 109053 . + . ID=Phyra96588.7;Parent=Phyra96588;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_87 . CDS 109126 109415 . + 0 ID=Phyra96588;Parent=Phyra96588;rank=8 scaffold_87 . exon 109126 109415 . + . ID=Phyra96588.8;Parent=Phyra96588;constitutive=1;ensembl_phase=1;rank=8 scaffold_87 . CDS 109665 109815 . + 0 ID=Phyra96588;Parent=Phyra96588;rank=9 scaffold_87 . exon 109665 109815 . + . ID=Phyra96588.9;Parent=Phyra96588;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_87 . CDS 109897 110297 . + 0 ID=Phyra96588;Parent=Phyra96588;rank=10 scaffold_87 . exon 109897 110297 . + . ID=Phyra96588.10;Parent=Phyra96588;constitutive=1;ensembl_phase=1;rank=10 scaffold_87 ensembl protein_coding_gene 110433 112188 . - . ID=Phyra96590;biotype=protein_coding;external_name=C_scaffold_87000010;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 110433 112188 . - . ID=Phyra96590;Parent=Phyra96590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 110433 110580 . - 0 ID=Phyra96590;Parent=Phyra96590;rank=2 scaffold_87 . exon 110433 110580 . - . ID=Phyra96590.2;Parent=Phyra96590;constitutive=1;ensembl_phase=2;rank=2 scaffold_87 . CDS 110645 112188 . - 0 ID=Phyra96590;Parent=Phyra96590;rank=1 scaffold_87 . exon 110645 112188 . - . ID=Phyra96590.1;Parent=Phyra96590;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 ensembl protein_coding_gene 112377 118031 . - . ID=Phyra96591;biotype=protein_coding;external_name=C_scaffold_87000011;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 112377 118031 . - . ID=Phyra96591;Parent=Phyra96591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 112377 112538 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=20 scaffold_87 . exon 112377 112538 . - . ID=Phyra96591.20;Parent=Phyra96591;constitutive=1;rank=20 scaffold_87 . CDS 112735 112884 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=19 scaffold_87 . exon 112735 112884 . - . ID=Phyra96591.19;Parent=Phyra96591;constitutive=1;rank=19 scaffold_87 . CDS 112945 113010 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=18 scaffold_87 . exon 112945 113010 . - . ID=Phyra96591.18;Parent=Phyra96591;constitutive=1;rank=18 scaffold_87 . CDS 113074 113136 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=17 scaffold_87 . exon 113074 113136 . - . ID=Phyra96591.17;Parent=Phyra96591;constitutive=1;rank=17 scaffold_87 . CDS 113207 113586 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=16 scaffold_87 . exon 113207 113586 . - . ID=Phyra96591.16;Parent=Phyra96591;constitutive=1;ensembl_phase=1;rank=16 scaffold_87 . CDS 114013 114016 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=15 scaffold_87 . exon 114013 114016 . - . ID=Phyra96591.15;Parent=Phyra96591;constitutive=1;ensembl_end_phase=1;rank=15 scaffold_87 . CDS 114130 114263 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=14 scaffold_87 . exon 114130 114263 . - . ID=Phyra96591.14;Parent=Phyra96591;constitutive=1;ensembl_phase=1;rank=14 scaffold_87 . CDS 114336 114686 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=13 scaffold_87 . exon 114336 114686 . - . ID=Phyra96591.13;Parent=Phyra96591;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_87 . CDS 115085 115101 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=12 scaffold_87 . exon 115085 115101 . - . ID=Phyra96591.12;Parent=Phyra96591;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_87 . CDS 115363 115427 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=11 scaffold_87 . exon 115363 115427 . - . ID=Phyra96591.11;Parent=Phyra96591;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_87 . CDS 115514 115582 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=10 scaffold_87 . CDS 115660 115815 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=9 scaffold_87 . CDS 115887 115952 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=8 scaffold_87 . CDS 116023 116085 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=7 scaffold_87 . CDS 116148 116592 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=6 scaffold_87 . CDS 116821 116888 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=5 scaffold_87 . CDS 116959 117209 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=4 scaffold_87 . CDS 117281 117693 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=3 scaffold_87 . CDS 117863 117947 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=2 scaffold_87 . CDS 118016 118031 . - 0 ID=Phyra96591;Parent=Phyra96591;rank=1 scaffold_87 . repeat_region 116133 116141 . ? . description=dust scaffold_87 . repeat_region 118257 118265 . ? . description=dust scaffold_87 . repeat_region 124394 124405 . ? . description=dust scaffold_87 . repeat_region 124591 124622 . ? . description=dust scaffold_87 . repeat_region 124598 124622 . ? . description=trf scaffold_87 ensembl protein_coding_gene 118368 120291 . - . ID=Phyra83382;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000043;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 118368 120291 . - . ID=Phyra83382;Parent=Phyra83382;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 118368 118537 . - 0 ID=Phyra83382;Parent=Phyra83382;rank=5 scaffold_87 . exon 118368 118537 . - . ID=Phyra83382.5;Parent=Phyra83382;constitutive=1;ensembl_phase=1;rank=5 scaffold_87 . CDS 118610 118940 . - 0 ID=Phyra83382;Parent=Phyra83382;rank=4 scaffold_87 . exon 118610 118940 . - . ID=Phyra83382.4;Parent=Phyra83382;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_87 . CDS 119227 119355 . - 0 ID=Phyra83382;Parent=Phyra83382;rank=3 scaffold_87 . exon 119227 119355 . - . ID=Phyra83382.3;Parent=Phyra83382;constitutive=1;rank=3 scaffold_87 . CDS 119427 119648 . - 0 ID=Phyra83382;Parent=Phyra83382;rank=2 scaffold_87 . exon 119427 119648 . - . ID=Phyra83382.2;Parent=Phyra83382;constitutive=1;rank=2 scaffold_87 . CDS 119725 120291 . - 0 ID=Phyra83382;Parent=Phyra83382;rank=1 scaffold_87 . exon 119725 120291 . - . ID=Phyra83382.1;Parent=Phyra83382;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 124688 126055 . + . ID=Phyra83383;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000044;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 124688 126055 . + . ID=Phyra83383;Parent=Phyra83383;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 124688 126055 . + 0 ID=Phyra83383;Parent=Phyra83383;rank=1 scaffold_87 . exon 124688 126055 . + . ID=Phyra83383.1;Parent=Phyra83383;constitutive=1;rank=1 scaffold_87 . exon 115514 115582 . - . ID=Phyra96591.10;Parent=Phyra96591;constitutive=1;rank=10 scaffold_87 . exon 115660 115815 . - . ID=Phyra96591.9;Parent=Phyra96591;constitutive=1;rank=9 scaffold_87 . exon 115887 115952 . - . ID=Phyra96591.8;Parent=Phyra96591;constitutive=1;rank=8 scaffold_87 . exon 116023 116085 . - . ID=Phyra96591.7;Parent=Phyra96591;constitutive=1;rank=7 scaffold_87 . exon 116148 116592 . - . ID=Phyra96591.6;Parent=Phyra96591;constitutive=1;ensembl_phase=2;rank=6 scaffold_87 . exon 116821 116888 . - . ID=Phyra96591.5;Parent=Phyra96591;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_87 . exon 116959 117209 . - . ID=Phyra96591.4;Parent=Phyra96591;constitutive=1;ensembl_phase=1;rank=4 scaffold_87 . exon 117281 117693 . - . ID=Phyra96591.3;Parent=Phyra96591;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_87 . exon 117863 117947 . - . ID=Phyra96591.2;Parent=Phyra96591;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_87 . exon 118016 118031 . - . ID=Phyra96591.1;Parent=Phyra96591;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . biological_region 125069 125073 0.999 - . logic_name=eponine scaffold_87 . biological_region 125480 125480 0.999 - . logic_name=eponine scaffold_87 . biological_region 127221 127221 0.999 + . logic_name=eponine scaffold_87 . biological_region 127609 127610 0.999 + . logic_name=eponine scaffold_87 . biological_region 127693 127694 0.999 + . logic_name=eponine scaffold_87 . biological_region 127826 127829 0.999 - . logic_name=eponine scaffold_87 . biological_region 132596 132600 0.999 + . logic_name=eponine scaffold_87 . biological_region 132732 132735 0.999 - . logic_name=eponine scaffold_87 . biological_region 132781 132782 0.999 - . logic_name=eponine scaffold_87 . biological_region 132891 132896 0.999 + . logic_name=eponine scaffold_87 . biological_region 133066 133070 0.999 + . logic_name=eponine scaffold_87 . biological_region 134278 134282 0.999 - . logic_name=eponine scaffold_87 ensembl protein_coding_gene 126158 127891 . - . ID=Phyra83384;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000045;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 126158 127891 . - . ID=Phyra83384;Parent=Phyra83384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 126158 127891 . - 0 ID=Phyra83384;Parent=Phyra83384;rank=1 scaffold_87 . exon 126158 127891 . - . ID=Phyra83384.1;Parent=Phyra83384;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 128302 133194 . - . ID=Phyra83385;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000046;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 128302 133194 . - . ID=Phyra83385;Parent=Phyra83385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 128302 133194 . - 0 ID=Phyra83385;Parent=Phyra83385;rank=1 scaffold_87 . exon 128302 133194 . - . ID=Phyra83385.1;Parent=Phyra83385;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 134179 135155 . + . ID=Phyra83386;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000047;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 134179 135155 . + . ID=Phyra83386;Parent=Phyra83386;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 134179 134250 . + 0 ID=Phyra83386;Parent=Phyra83386;rank=1 scaffold_87 . exon 134179 134250 . + . ID=Phyra83386.1;Parent=Phyra83386;constitutive=1;rank=1 scaffold_87 . CDS 134274 134565 . + 0 ID=Phyra83386;Parent=Phyra83386;rank=2 scaffold_87 . exon 134274 134565 . + . ID=Phyra83386.2;Parent=Phyra83386;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_87 . CDS 134678 134804 . + 0 ID=Phyra83386;Parent=Phyra83386;rank=3 scaffold_87 . exon 134678 134804 . + . ID=Phyra83386.3;Parent=Phyra83386;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_87 . CDS 134906 135155 . + 0 ID=Phyra83386;Parent=Phyra83386;rank=4 scaffold_87 . repeat_region 135152 135179 . ? . description=trf scaffold_87 . repeat_region 137030 137074 . ? . description=trf scaffold_87 . repeat_region 137128 137151 . ? . description=trf scaffold_87 . repeat_region 137736 137764 . ? . description=trf scaffold_87 . repeat_region 139957 139988 . ? . description=trf scaffold_87 . repeat_region 140714 140754 . ? . description=trf scaffold_87 ensembl protein_coding_gene 143054 144196 . - . ID=Phyra72112;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_87000009;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 143054 144196 . - . ID=Phyra72112;Parent=Phyra72112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 143054 143152 . - 0 ID=Phyra72112;Parent=Phyra72112;rank=3 scaffold_87 . exon 143054 143152 . - . ID=Phyra72112.3;Parent=Phyra72112;constitutive=1;rank=3 scaffold_87 . CDS 143204 144094 . - 0 ID=Phyra72112;Parent=Phyra72112;rank=2 scaffold_87 . exon 143204 144094 . - . ID=Phyra72112.2;Parent=Phyra72112;constitutive=1;rank=2 scaffold_87 . CDS 144134 144196 . - 0 ID=Phyra72112;Parent=Phyra72112;rank=1 scaffold_87 . exon 144134 144196 . - . ID=Phyra72112.1;Parent=Phyra72112;constitutive=1;rank=1 scaffold_87 . exon 134906 135155 . + . ID=Phyra83386.4;Parent=Phyra83386;constitutive=1;ensembl_phase=2;rank=4 scaffold_87 ensembl protein_coding_gene 135833 137116 . - . ID=Phyra83387;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000048;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 135833 137116 . - . ID=Phyra83387;Parent=Phyra83387;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 135833 137116 . - 0 ID=Phyra83387;Parent=Phyra83387;rank=1 scaffold_87 . exon 135833 137116 . - . ID=Phyra83387.1;Parent=Phyra83387;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 138561 140617 . - . ID=Phyra83388;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000049;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 138561 140617 . - . ID=Phyra83388;Parent=Phyra83388;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 138561 139190 . - 0 ID=Phyra83388;Parent=Phyra83388;rank=7 scaffold_87 . exon 138561 139190 . - . ID=Phyra83388.7;Parent=Phyra83388;constitutive=1;rank=7 scaffold_87 . CDS 139220 139449 . - 0 ID=Phyra83388;Parent=Phyra83388;rank=6 scaffold_87 . exon 139220 139449 . - . ID=Phyra83388.6;Parent=Phyra83388;constitutive=1;ensembl_phase=1;rank=6 scaffold_87 . CDS 139557 139701 . - 0 ID=Phyra83388;Parent=Phyra83388;rank=5 scaffold_87 . exon 139557 139701 . - . ID=Phyra83388.5;Parent=Phyra83388;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_87 . CDS 139779 140080 . - 0 ID=Phyra83388;Parent=Phyra83388;rank=4 scaffold_87 . exon 139779 140080 . - . ID=Phyra83388.4;Parent=Phyra83388;constitutive=1;ensembl_phase=1;rank=4 scaffold_87 . CDS 140206 140294 . - 0 ID=Phyra83388;Parent=Phyra83388;rank=3 scaffold_87 . exon 140206 140294 . - . ID=Phyra83388.3;Parent=Phyra83388;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_87 . CDS 140375 140491 . - 0 ID=Phyra83388;Parent=Phyra83388;rank=2 scaffold_87 . exon 140375 140491 . - . ID=Phyra83388.2;Parent=Phyra83388;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_87 . CDS 140580 140617 . - 0 ID=Phyra83388;Parent=Phyra83388;rank=1 scaffold_87 . exon 140580 140617 . - . ID=Phyra83388.1;Parent=Phyra83388;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 ensembl protein_coding_gene 141059 142558 . - . ID=Phyra83389;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000050;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 141059 142558 . - . ID=Phyra83389;Parent=Phyra83389;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 141059 142558 . - 0 ID=Phyra83389;Parent=Phyra83389;rank=1 scaffold_87 . exon 141059 142558 . - . ID=Phyra83389.1;Parent=Phyra83389;constitutive=1;rank=1 scaffold_87 . biological_region 144630 144631 0.999 - . logic_name=eponine scaffold_87 . biological_region 147753 147760 0.999 - . logic_name=eponine scaffold_87 . biological_region 148804 148807 0.999 + . logic_name=eponine scaffold_87 . biological_region 149706 149708 0.999 + . logic_name=eponine scaffold_87 . biological_region 149732 149734 0.999 + . logic_name=eponine scaffold_87 . biological_region 149746 149754 0.999 + . logic_name=eponine scaffold_87 . biological_region 149750 149754 0.999 - . logic_name=eponine scaffold_87 . biological_region 149763 149764 0.999 + . logic_name=eponine scaffold_87 . biological_region 149767 149775 0.999 - . logic_name=eponine scaffold_87 . biological_region 149792 149797 0.999 - . logic_name=eponine scaffold_87 . biological_region 149804 149808 0.999 + . logic_name=eponine scaffold_87 . biological_region 149813 149819 0.999 - . logic_name=eponine scaffold_87 . biological_region 149826 149838 0.999 - . logic_name=eponine scaffold_87 . biological_region 149848 149853 0.999 + . logic_name=eponine scaffold_87 . biological_region 149867 149873 0.999 + . logic_name=eponine scaffold_87 . biological_region 149885 149895 0.999 - . logic_name=eponine scaffold_87 . biological_region 149947 149953 0.999 - . logic_name=eponine scaffold_87 . biological_region 149974 149976 0.999 - . logic_name=eponine scaffold_87 . biological_region 150021 150025 0.999 - . logic_name=eponine scaffold_87 . biological_region 151490 151492 0.999 - . logic_name=eponine scaffold_87 ensembl protein_coding_gene 144546 147127 . + . ID=Phyra83391;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000052;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 144546 147127 . + . ID=Phyra83391;Parent=Phyra83391;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 144546 146115 . + 0 ID=Phyra83391;Parent=Phyra83391;rank=1 scaffold_87 . exon 144546 146115 . + . ID=Phyra83391.1;Parent=Phyra83391;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . CDS 146445 147127 . + 0 ID=Phyra83391;Parent=Phyra83391;rank=2 scaffold_87 . exon 146445 147127 . + . ID=Phyra83391.2;Parent=Phyra83391;constitutive=1;ensembl_phase=1;rank=2 scaffold_87 ensembl protein_coding_gene 147541 148287 . + . ID=Phyra83392;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000053;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 147541 148287 . + . ID=Phyra83392;Parent=Phyra83392;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 147541 147994 . + 0 ID=Phyra83392;Parent=Phyra83392;rank=1 scaffold_87 . exon 147541 147994 . + . ID=Phyra83392.1;Parent=Phyra83392;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . CDS 148055 148287 . + 0 ID=Phyra83392;Parent=Phyra83392;rank=2 scaffold_87 . exon 148055 148287 . + . ID=Phyra83392.2;Parent=Phyra83392;constitutive=1;ensembl_phase=1;rank=2 scaffold_87 ensembl protein_coding_gene 149662 151761 . + . ID=Phyra83393;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000054;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 149662 151761 . + . ID=Phyra83393;Parent=Phyra83393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 149662 151761 . + 0 ID=Phyra83393;Parent=Phyra83393;rank=1 scaffold_87 . exon 149662 151761 . + . ID=Phyra83393.1;Parent=Phyra83393;constitutive=1;rank=1 scaffold_87 . repeat_region 156071 156117 . ? . description=dust scaffold_87 . repeat_region 156430 156437 . ? . description=dust scaffold_87 ensembl protein_coding_gene 154643 156035 . - . ID=Phyra54016;biotype=protein_coding;external_name=gwEuk.87.89.1;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 154643 156035 . - . ID=Phyra54016;Parent=Phyra54016;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 154643 155311 . - 0 ID=Phyra54016;Parent=Phyra54016;rank=3 scaffold_87 . exon 154643 155311 . - . ID=Phyra54016.3;Parent=Phyra54016;constitutive=1;rank=3 scaffold_87 . CDS 155379 155609 . - 0 ID=Phyra54016;Parent=Phyra54016;rank=2 scaffold_87 . exon 155379 155609 . - . ID=Phyra54016.2;Parent=Phyra54016;constitutive=1;rank=2 scaffold_87 . CDS 155676 156035 . - 0 ID=Phyra54016;Parent=Phyra54016;rank=1 scaffold_87 . exon 155676 156035 . - . ID=Phyra54016.1;Parent=Phyra54016;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 158499 159574 . - . ID=Phyra83395;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000056;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 158499 159574 . - . ID=Phyra83395;Parent=Phyra83395;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 158499 159238 . - 0 ID=Phyra83395;Parent=Phyra83395;rank=3 scaffold_87 . exon 158499 159238 . - . ID=Phyra83395.3;Parent=Phyra83395;constitutive=1;ensembl_phase=1;rank=3 scaffold_87 . CDS 159299 159495 . - 0 ID=Phyra83395;Parent=Phyra83395;rank=2 scaffold_87 . exon 159299 159495 . - . ID=Phyra83395.2;Parent=Phyra83395;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_87 . CDS 159558 159574 . - 0 ID=Phyra83395;Parent=Phyra83395;rank=1 scaffold_87 . exon 159558 159574 . - . ID=Phyra83395.1;Parent=Phyra83395;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 ensembl protein_coding_gene 160125 161208 . + . ID=Phyra83396;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000057;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 160125 161208 . + . ID=Phyra83396;Parent=Phyra83396;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 160125 160250 . + 0 ID=Phyra83396;Parent=Phyra83396;rank=1 scaffold_87 . exon 160125 160250 . + . ID=Phyra83396.1;Parent=Phyra83396;constitutive=1;rank=1 scaffold_87 . CDS 160313 160711 . + 0 ID=Phyra83396;Parent=Phyra83396;rank=2 scaffold_87 . exon 160313 160711 . + . ID=Phyra83396.2;Parent=Phyra83396;constitutive=1;rank=2 scaffold_87 . CDS 160783 160982 . + 0 ID=Phyra83396;Parent=Phyra83396;rank=3 scaffold_87 . exon 160783 160982 . + . ID=Phyra83396.3;Parent=Phyra83396;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_87 . CDS 161085 161208 . + 0 ID=Phyra83396;Parent=Phyra83396;rank=4 scaffold_87 . exon 161085 161208 . + . ID=Phyra83396.4;Parent=Phyra83396;constitutive=1;ensembl_phase=2;rank=4 scaffold_87 ensembl protein_coding_gene 161370 162524 . - . ID=Phyra83397;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000058;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 161370 162524 . - . ID=Phyra83397;Parent=Phyra83397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 161370 162524 . - 0 ID=Phyra83397;Parent=Phyra83397;rank=1 scaffold_87 . exon 161370 162524 . - . ID=Phyra83397.1;Parent=Phyra83397;constitutive=1;rank=1 scaffold_87 . biological_region 170480 170485 0.999 + . logic_name=eponine scaffold_87 . biological_region 170521 170521 0.999 + . logic_name=eponine scaffold_87 ensembl protein_coding_gene 163587 164215 . + . ID=Phyra83398;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000059;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 163587 164215 . + . ID=Phyra83398;Parent=Phyra83398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 163587 163647 . + 0 ID=Phyra83398;Parent=Phyra83398;rank=1 scaffold_87 . exon 163587 163647 . + . ID=Phyra83398.1;Parent=Phyra83398;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . CDS 163721 163904 . + 0 ID=Phyra83398;Parent=Phyra83398;rank=2 scaffold_87 . exon 163721 163904 . + . ID=Phyra83398.2;Parent=Phyra83398;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_87 . CDS 163972 164215 . + 0 ID=Phyra83398;Parent=Phyra83398;rank=3 scaffold_87 . exon 163972 164215 . + . ID=Phyra83398.3;Parent=Phyra83398;constitutive=1;ensembl_phase=2;rank=3 scaffold_87 ensembl protein_coding_gene 170413 171558 . + . ID=Phyra83400;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000061;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 170413 171558 . + . ID=Phyra83400;Parent=Phyra83400;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 170413 171558 . + 0 ID=Phyra83400;Parent=Phyra83400;rank=1 scaffold_87 . exon 170413 171558 . + . ID=Phyra83400.1;Parent=Phyra83400;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 171817 173257 . - . ID=Phyra83401;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000062;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 171817 173257 . - . ID=Phyra83401;Parent=Phyra83401;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 171817 171921 . - 0 ID=Phyra83401;Parent=Phyra83401;rank=4 scaffold_87 . exon 171817 171921 . - . ID=Phyra83401.4;Parent=Phyra83401;constitutive=1;rank=4 scaffold_87 . CDS 171985 172084 . - 0 ID=Phyra83401;Parent=Phyra83401;rank=3 scaffold_87 . exon 171985 172084 . - . ID=Phyra83401.3;Parent=Phyra83401;constitutive=1;ensembl_phase=2;rank=3 scaffold_87 . CDS 172151 172221 . - 0 ID=Phyra83401;Parent=Phyra83401;rank=2 scaffold_87 . exon 172151 172221 . - . ID=Phyra83401.2;Parent=Phyra83401;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_87 . CDS 172295 173257 . - 0 ID=Phyra83401;Parent=Phyra83401;rank=1 scaffold_87 . exon 172295 173257 . - . ID=Phyra83401.1;Parent=Phyra83401;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 164421 167035 . - . ID=Phyra96593;biotype=protein_coding;external_name=C_scaffold_87000013;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 164421 167035 . - . ID=Phyra96593;Parent=Phyra96593;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 164421 164505 . - 0 ID=Phyra96593;Parent=Phyra96593;rank=7 scaffold_87 . exon 164421 164505 . - . ID=Phyra96593.7;Parent=Phyra96593;constitutive=1;ensembl_phase=2;rank=7 scaffold_87 . CDS 164534 165562 . - 0 ID=Phyra96593;Parent=Phyra96593;rank=6 scaffold_87 . exon 164534 165562 . - . ID=Phyra96593.6;Parent=Phyra96593;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_87 . CDS 165899 165948 . - 0 ID=Phyra96593;Parent=Phyra96593;rank=5 scaffold_87 . exon 165899 165948 . - . ID=Phyra96593.5;Parent=Phyra96593;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_87 . CDS 166022 166031 . - 0 ID=Phyra96593;Parent=Phyra96593;rank=4 scaffold_87 . exon 166022 166031 . - . ID=Phyra96593.4;Parent=Phyra96593;constitutive=1;ensembl_phase=2;rank=4 scaffold_87 . CDS 166113 166455 . - 0 ID=Phyra96593;Parent=Phyra96593;rank=3 scaffold_87 . exon 166113 166455 . - . ID=Phyra96593.3;Parent=Phyra96593;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_87 . CDS 166519 166737 . - 0 ID=Phyra96593;Parent=Phyra96593;rank=2 scaffold_87 . exon 166519 166737 . - . ID=Phyra96593.2;Parent=Phyra96593;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_87 . CDS 166930 167035 . - 0 ID=Phyra96593;Parent=Phyra96593;rank=1 scaffold_87 . exon 166930 167035 . - . ID=Phyra96593.1;Parent=Phyra96593;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 ensembl protein_coding_gene 167165 168610 . + . ID=Phyra96594;biotype=protein_coding;external_name=C_scaffold_87000014;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 167165 168610 . + . ID=Phyra96594;Parent=Phyra96594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 167165 167321 . + 0 ID=Phyra96594;Parent=Phyra96594;rank=1 scaffold_87 . exon 167165 167321 . + . ID=Phyra96594.1;Parent=Phyra96594;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . CDS 167448 167654 . + 0 ID=Phyra96594;Parent=Phyra96594;rank=2 scaffold_87 . exon 167448 167654 . + . ID=Phyra96594.2;Parent=Phyra96594;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_87 . CDS 167734 167744 . + 0 ID=Phyra96594;Parent=Phyra96594;rank=3 scaffold_87 . exon 167734 167744 . + . ID=Phyra96594.3;Parent=Phyra96594;constitutive=1;ensembl_phase=1;rank=3 scaffold_87 . CDS 167837 168043 . + 0 ID=Phyra96594;Parent=Phyra96594;rank=4 scaffold_87 . exon 167837 168043 . + . ID=Phyra96594.4;Parent=Phyra96594;constitutive=1;rank=4 scaffold_87 . CDS 168218 168610 . + 0 ID=Phyra96594;Parent=Phyra96594;rank=5 scaffold_87 . exon 168218 168610 . + . ID=Phyra96594.5;Parent=Phyra96594;constitutive=1;rank=5 scaffold_87 . repeat_region 181994 182029 . ? . description=trf scaffold_87 ensembl protein_coding_gene 173835 176134 . - . ID=Phyra83402;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000063;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 173835 176134 . - . ID=Phyra83402;Parent=Phyra83402;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 173835 173951 . - 0 ID=Phyra83402;Parent=Phyra83402;rank=13 scaffold_87 . exon 173835 173951 . - . ID=Phyra83402.13;Parent=Phyra83402;constitutive=1;rank=13 scaffold_87 . CDS 174015 174071 . - 0 ID=Phyra83402;Parent=Phyra83402;rank=12 scaffold_87 . exon 174015 174071 . - . ID=Phyra83402.12;Parent=Phyra83402;constitutive=1;rank=12 scaffold_87 . CDS 174134 174176 . - 0 ID=Phyra83402;Parent=Phyra83402;rank=11 scaffold_87 . exon 174134 174176 . - . ID=Phyra83402.11;Parent=Phyra83402;constitutive=1;ensembl_phase=2;rank=11 scaffold_87 . CDS 174240 174385 . - 0 ID=Phyra83402;Parent=Phyra83402;rank=10 scaffold_87 . exon 174240 174385 . - . ID=Phyra83402.10;Parent=Phyra83402;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_87 . CDS 174451 174514 . - 0 ID=Phyra83402;Parent=Phyra83402;rank=9 scaffold_87 . exon 174451 174514 . - . ID=Phyra83402.9;Parent=Phyra83402;constitutive=1;ensembl_phase=2;rank=9 scaffold_87 . CDS 174584 174683 . - 0 ID=Phyra83402;Parent=Phyra83402;rank=8 scaffold_87 . exon 174584 174683 . - . ID=Phyra83402.8;Parent=Phyra83402;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_87 . CDS 174763 174835 . - 0 ID=Phyra83402;Parent=Phyra83402;rank=7 scaffold_87 . exon 174763 174835 . - . ID=Phyra83402.7;Parent=Phyra83402;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_87 . CDS 174909 174954 . - 0 ID=Phyra83402;Parent=Phyra83402;rank=6 scaffold_87 . exon 174909 174954 . - . ID=Phyra83402.6;Parent=Phyra83402;constitutive=1;ensembl_phase=2;rank=6 scaffold_87 . CDS 175026 175218 . - 0 ID=Phyra83402;Parent=Phyra83402;rank=5 scaffold_87 . exon 175026 175218 . - . ID=Phyra83402.5;Parent=Phyra83402;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_87 . CDS 175292 175491 . - 0 ID=Phyra83402;Parent=Phyra83402;rank=4 scaffold_87 . exon 175292 175491 . - . ID=Phyra83402.4;Parent=Phyra83402;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_87 . CDS 175551 175747 . - 0 ID=Phyra83402;Parent=Phyra83402;rank=3 scaffold_87 . exon 175551 175747 . - . ID=Phyra83402.3;Parent=Phyra83402;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_87 . CDS 175819 175902 . - 0 ID=Phyra83402;Parent=Phyra83402;rank=2 scaffold_87 . exon 175819 175902 . - . ID=Phyra83402.2;Parent=Phyra83402;constitutive=1;rank=2 scaffold_87 . CDS 175970 176134 . - 0 ID=Phyra83402;Parent=Phyra83402;rank=1 scaffold_87 . exon 175970 176134 . - . ID=Phyra83402.1;Parent=Phyra83402;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 180790 182093 . + . ID=Phyra83403;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000064;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 180790 182093 . + . ID=Phyra83403;Parent=Phyra83403;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 180790 180840 . + 0 ID=Phyra83403;Parent=Phyra83403;rank=1 scaffold_87 . exon 180790 180840 . + . ID=Phyra83403.1;Parent=Phyra83403;constitutive=1;rank=1 scaffold_87 . CDS 180901 181092 . + 0 ID=Phyra83403;Parent=Phyra83403;rank=2 scaffold_87 . exon 180901 181092 . + . ID=Phyra83403.2;Parent=Phyra83403;constitutive=1;rank=2 scaffold_87 . CDS 181146 181301 . + 0 ID=Phyra83403;Parent=Phyra83403;rank=3 scaffold_87 . exon 181146 181301 . + . ID=Phyra83403.3;Parent=Phyra83403;constitutive=1;rank=3 scaffold_87 . CDS 181366 181537 . + 0 ID=Phyra83403;Parent=Phyra83403;rank=4 scaffold_87 . exon 181366 181537 . + . ID=Phyra83403.4;Parent=Phyra83403;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_87 . CDS 181564 182093 . + 0 ID=Phyra83403;Parent=Phyra83403;rank=5 scaffold_87 . exon 181564 182093 . + . ID=Phyra83403.5;Parent=Phyra83403;constitutive=1;ensembl_phase=1;rank=5 scaffold_87 ensembl protein_coding_gene 182306 185212 . + . ID=Phyra83404;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000065;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 182306 185212 . + . ID=Phyra83404;Parent=Phyra83404;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 182306 182806 . + 0 ID=Phyra83404;Parent=Phyra83404;rank=1 scaffold_87 . exon 182306 182806 . + . ID=Phyra83404.1;Parent=Phyra83404;constitutive=1;rank=1 scaffold_87 . CDS 182875 182951 . + 0 ID=Phyra83404;Parent=Phyra83404;rank=2 scaffold_87 . CDS 183012 183097 . + 0 ID=Phyra83404;Parent=Phyra83404;rank=3 scaffold_87 . CDS 183182 183275 . + 0 ID=Phyra83404;Parent=Phyra83404;rank=4 scaffold_87 . CDS 183342 183476 . + 0 ID=Phyra83404;Parent=Phyra83404;rank=5 scaffold_87 . CDS 183542 183596 . + 0 ID=Phyra83404;Parent=Phyra83404;rank=6 scaffold_87 . CDS 183670 184036 . + 0 ID=Phyra83404;Parent=Phyra83404;rank=7 scaffold_87 . CDS 184111 184217 . + 0 ID=Phyra83404;Parent=Phyra83404;rank=8 scaffold_87 . CDS 184304 184471 . + 0 ID=Phyra83404;Parent=Phyra83404;rank=9 scaffold_87 . CDS 184539 184814 . + 0 ID=Phyra83404;Parent=Phyra83404;rank=10 scaffold_87 . CDS 184883 185212 . + 0 ID=Phyra83404;Parent=Phyra83404;rank=11 scaffold_87 ensembl protein_coding_gene 176276 176682 . + . ID=Phyra96598;biotype=protein_coding;external_name=C_scaffold_87000018;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 176276 176682 . + . ID=Phyra96598;Parent=Phyra96598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 176276 176287 . + 0 ID=Phyra96598;Parent=Phyra96598;rank=1 scaffold_87 . exon 176276 176287 . + . ID=Phyra96598.1;Parent=Phyra96598;constitutive=1;rank=1 scaffold_87 . CDS 176354 176467 . + 0 ID=Phyra96598;Parent=Phyra96598;rank=2 scaffold_87 . exon 176354 176467 . + . ID=Phyra96598.2;Parent=Phyra96598;constitutive=1;rank=2 scaffold_87 . CDS 176566 176682 . + 0 ID=Phyra96598;Parent=Phyra96598;rank=3 scaffold_87 . exon 176566 176682 . + . ID=Phyra96598.3;Parent=Phyra96598;constitutive=1;rank=3 scaffold_87 . biological_region 185629 185632 0.999 + . logic_name=eponine scaffold_87 . repeat_region 186163 186209 . ? . description=dust scaffold_87 . biological_region 187617 187619 0.999 - . logic_name=eponine scaffold_87 . biological_region 187840 187842 0.999 + . logic_name=eponine scaffold_87 . biological_region 187924 187927 0.999 - . logic_name=eponine scaffold_87 . biological_region 188383 188384 0.999 - . logic_name=eponine scaffold_87 . biological_region 190022 190024 0.999 + . logic_name=eponine scaffold_87 . biological_region 190892 190896 0.999 + . logic_name=eponine scaffold_87 ensembl protein_coding_gene 188863 189947 . - . ID=Phyra54028;biotype=protein_coding;external_name=gwEuk.87.101.1;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 188863 189947 . - . ID=Phyra54028;Parent=Phyra54028;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 188863 188958 . - 0 ID=Phyra54028;Parent=Phyra54028;rank=5 scaffold_87 . exon 188863 188958 . - . ID=Phyra54028.5;Parent=Phyra54028;constitutive=1;rank=5 scaffold_87 . CDS 189045 189275 . - 0 ID=Phyra54028;Parent=Phyra54028;rank=4 scaffold_87 . exon 189045 189275 . - . ID=Phyra54028.4;Parent=Phyra54028;constitutive=1;rank=4 scaffold_87 . CDS 189345 189397 . - 0 ID=Phyra54028;Parent=Phyra54028;rank=3 scaffold_87 . exon 189345 189397 . - . ID=Phyra54028.3;Parent=Phyra54028;constitutive=1;ensembl_phase=1;rank=3 scaffold_87 . CDS 189469 189584 . - 0 ID=Phyra54028;Parent=Phyra54028;rank=2 scaffold_87 . exon 189469 189584 . - . ID=Phyra54028.2;Parent=Phyra54028;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_87 . CDS 189643 189947 . - 0 ID=Phyra54028;Parent=Phyra54028;rank=1 scaffold_87 . exon 189643 189947 . - . ID=Phyra54028.1;Parent=Phyra54028;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 ensembl protein_coding_gene 191533 193701 . - . ID=Phyra54032;biotype=protein_coding;external_name=gwEuk.87.105.1;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 191533 193701 . - . ID=Phyra54032;Parent=Phyra54032;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 191533 191643 . - 0 ID=Phyra54032;Parent=Phyra54032;rank=5 scaffold_87 . exon 191533 191643 . - . ID=Phyra54032.5;Parent=Phyra54032;constitutive=1;rank=5 scaffold_87 . CDS 191723 191797 . - 0 ID=Phyra54032;Parent=Phyra54032;rank=4 scaffold_87 . exon 191723 191797 . - . ID=Phyra54032.4;Parent=Phyra54032;constitutive=1;rank=4 scaffold_87 . CDS 191864 193234 . - 0 ID=Phyra54032;Parent=Phyra54032;rank=3 scaffold_87 . exon 191864 193234 . - . ID=Phyra54032.3;Parent=Phyra54032;constitutive=1;rank=3 scaffold_87 . CDS 193304 193552 . - 0 ID=Phyra54032;Parent=Phyra54032;rank=2 scaffold_87 . CDS 193624 193701 . - 0 ID=Phyra54032;Parent=Phyra54032;rank=1 scaffold_87 . exon 182875 182951 . + . ID=Phyra83404.2;Parent=Phyra83404;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_87 . exon 183012 183097 . + . ID=Phyra83404.3;Parent=Phyra83404;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_87 . exon 183182 183275 . + . ID=Phyra83404.4;Parent=Phyra83404;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_87 . exon 183342 183476 . + . ID=Phyra83404.5;Parent=Phyra83404;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_87 . exon 183542 183596 . + . ID=Phyra83404.6;Parent=Phyra83404;constitutive=1;ensembl_phase=2;rank=6 scaffold_87 . exon 183670 184036 . + . ID=Phyra83404.7;Parent=Phyra83404;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_87 . exon 184111 184217 . + . ID=Phyra83404.8;Parent=Phyra83404;constitutive=1;ensembl_phase=1;rank=8 scaffold_87 . exon 184304 184471 . + . ID=Phyra83404.9;Parent=Phyra83404;constitutive=1;rank=9 scaffold_87 . exon 184539 184814 . + . ID=Phyra83404.10;Parent=Phyra83404;constitutive=1;rank=10 scaffold_87 . exon 184883 185212 . + . ID=Phyra83404.11;Parent=Phyra83404;constitutive=1;rank=11 scaffold_87 ensembl protein_coding_gene 185478 186236 . + . ID=Phyra83405;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000066;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 185478 186236 . + . ID=Phyra83405;Parent=Phyra83405;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 185478 186236 . + 0 ID=Phyra83405;Parent=Phyra83405;rank=1 scaffold_87 . exon 185478 186236 . + . ID=Phyra83405.1;Parent=Phyra83405;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 186380 187000 . - . ID=Phyra83406;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000067;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 186380 187000 . - . ID=Phyra83406;Parent=Phyra83406;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 186380 187000 . - 0 ID=Phyra83406;Parent=Phyra83406;rank=1 scaffold_87 . exon 186380 187000 . - . ID=Phyra83406.1;Parent=Phyra83406;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 187184 188666 . + . ID=Phyra83407;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000068;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 187184 188666 . + . ID=Phyra83407;Parent=Phyra83407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 187184 187360 . + 0 ID=Phyra83407;Parent=Phyra83407;rank=1 scaffold_87 . exon 187184 187360 . + . ID=Phyra83407.1;Parent=Phyra83407;constitutive=1;rank=1 scaffold_87 . CDS 187405 187941 . + 0 ID=Phyra83407;Parent=Phyra83407;rank=2 scaffold_87 . exon 187405 187941 . + . ID=Phyra83407.2;Parent=Phyra83407;constitutive=1;rank=2 scaffold_87 . CDS 188022 188666 . + 0 ID=Phyra83407;Parent=Phyra83407;rank=3 scaffold_87 . exon 188022 188666 . + . ID=Phyra83407.3;Parent=Phyra83407;constitutive=1;rank=3 scaffold_87 ensembl protein_coding_gene 190007 190570 . + . ID=Phyra83408;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000069;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 190007 190570 . + . ID=Phyra83408;Parent=Phyra83408;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 190007 190570 . + 0 ID=Phyra83408;Parent=Phyra83408;rank=1 scaffold_87 . exon 190007 190570 . + . ID=Phyra83408.1;Parent=Phyra83408;constitutive=1;rank=1 scaffold_87 . repeat_region 195096 195399 . + . description=GypsyPi-1c_LTR scaffold_87 . repeat_region 195401 195724 . + . description=GypsyPi-1c_I-int scaffold_87 . exon 193304 193552 . - . ID=Phyra54032.2;Parent=Phyra54032;constitutive=1;rank=2 scaffold_87 . exon 193624 193701 . - . ID=Phyra54032.1;Parent=Phyra54032;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 193779 197250 . + . ID=Phyra83410;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_87000071;logic_name=jgi_phyra1 scaffold_87 ensembl transcript 193779 197250 . + . ID=Phyra83410;Parent=Phyra83410;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_87 . CDS 193779 194896 . + 0 ID=Phyra83410;Parent=Phyra83410;rank=1 scaffold_87 . exon 193779 194896 . + . ID=Phyra83410.1;Parent=Phyra83410;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 . CDS 195420 195438 . + 0 ID=Phyra83410;Parent=Phyra83410;rank=2 scaffold_87 . exon 195420 195438 . + . ID=Phyra83410.2;Parent=Phyra83410;constitutive=1;ensembl_phase=2;rank=2 scaffold_87 . CDS 195527 195700 . + 0 ID=Phyra83410;Parent=Phyra83410;rank=3 scaffold_87 . exon 195527 195700 . + . ID=Phyra83410.3;Parent=Phyra83410;constitutive=1;rank=3 scaffold_87 . CDS 195939 195952 . + 0 ID=Phyra83410;Parent=Phyra83410;rank=4 scaffold_87 . exon 195939 195952 . + . ID=Phyra83410.4;Parent=Phyra83410;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_87 . CDS 196030 196049 . + 0 ID=Phyra83410;Parent=Phyra83410;rank=5 scaffold_87 . exon 196030 196049 . + . ID=Phyra83410.5;Parent=Phyra83410;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_87 . CDS 196288 196391 . + 0 ID=Phyra83410;Parent=Phyra83410;rank=6 scaffold_87 . exon 196288 196391 . + . ID=Phyra83410.6;Parent=Phyra83410;constitutive=1;ensembl_phase=1;rank=6 scaffold_87 . CDS 196482 197126 . + 0 ID=Phyra83410;Parent=Phyra83410;rank=7 scaffold_87 . exon 196482 197126 . + . ID=Phyra83410.7;Parent=Phyra83410;constitutive=1;rank=7 scaffold_87 . CDS 197194 197250 . + 0 ID=Phyra83410;Parent=Phyra83410;rank=8 scaffold_87 . exon 197194 197250 . + . ID=Phyra83410.8;Parent=Phyra83410;constitutive=1;rank=8 ##gff-version 3 ##sequence-region scaffold_86 1 203638 scaffold_86 . repeat_region 526 587 . ? . description=trf scaffold_86 . repeat_region 2006 7462 . ? . description=dust scaffold_86 . repeat_region 8506 18778 . ? . description=dust scaffold_86 . repeat_region 19497 22403 . ? . description=dust scaffold_86 . repeat_region 23448 24369 . ? . description=dust scaffold_86 . repeat_region 25456 25463 . ? . description=dust scaffold_86 . repeat_region 25950 25991 . ? . description=trf scaffold_86 . repeat_region 28205 28251 . ? . description=trf scaffold_86 . biological_region 38186 38187 0.999 - . logic_name=eponine scaffold_86 . biological_region 38632 38634 0.999 - . logic_name=eponine scaffold_86 ensembl protein_coding_gene 32232 33206 . + . ID=Phyra72097;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_86000001;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 32232 33206 . + . ID=Phyra72097;Parent=Phyra72097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 32232 33206 . + 0 ID=Phyra72097;Parent=Phyra72097;rank=1 scaffold_86 . exon 32232 33206 . + . ID=Phyra72097.1;Parent=Phyra72097;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 35668 36903 . + . ID=Phyra83285;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000002;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 35668 36903 . + . ID=Phyra83285;Parent=Phyra83285;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 35668 36903 . + 0 ID=Phyra83285;Parent=Phyra83285;rank=1 scaffold_86 . exon 35668 36903 . + . ID=Phyra83285.1;Parent=Phyra83285;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 38014 38842 . + . ID=Phyra83286;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000003;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 38014 38842 . + . ID=Phyra83286;Parent=Phyra83286;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 38014 38735 . + 0 ID=Phyra83286;Parent=Phyra83286;rank=1 scaffold_86 . exon 38014 38735 . + . ID=Phyra83286.1;Parent=Phyra83286;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 . CDS 38839 38842 . + 0 ID=Phyra83286;Parent=Phyra83286;rank=2 scaffold_86 . repeat_region 39113 40882 . ? . description=dust scaffold_86 . exon 38839 38842 . + . ID=Phyra83286.2;Parent=Phyra83286;constitutive=1;ensembl_phase=2;rank=2 scaffold_86 ensembl protein_coding_gene 41469 42346 . + . ID=Phyra83287;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000004;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 41469 42346 . + . ID=Phyra83287;Parent=Phyra83287;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 41469 42213 . + 0 ID=Phyra83287;Parent=Phyra83287;rank=1 scaffold_86 . exon 41469 42213 . + . ID=Phyra83287.1;Parent=Phyra83287;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_86 . CDS 42321 42346 . + 0 ID=Phyra83287;Parent=Phyra83287;rank=2 scaffold_86 . exon 42321 42346 . + . ID=Phyra83287.2;Parent=Phyra83287;constitutive=1;ensembl_phase=1;rank=2 scaffold_86 ensembl protein_coding_gene 43575 44780 . - . ID=Phyra83288;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000005;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 43575 44780 . - . ID=Phyra83288;Parent=Phyra83288;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 43575 43763 . - 0 ID=Phyra83288;Parent=Phyra83288;rank=2 scaffold_86 . exon 43575 43763 . - . ID=Phyra83288.2;Parent=Phyra83288;constitutive=1;rank=2 scaffold_86 . CDS 43872 44780 . - 0 ID=Phyra83288;Parent=Phyra83288;rank=1 scaffold_86 . exon 43872 44780 . - . ID=Phyra83288.1;Parent=Phyra83288;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 47553 48949 . - . ID=Phyra83289;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000006;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 47553 48949 . - . ID=Phyra83289;Parent=Phyra83289;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 47553 48883 . - 0 ID=Phyra83289;Parent=Phyra83289;rank=2 scaffold_86 . exon 47553 48883 . - . ID=Phyra83289.2;Parent=Phyra83289;constitutive=1;ensembl_phase=1;rank=2 scaffold_86 . CDS 48907 48949 . - 0 ID=Phyra83289;Parent=Phyra83289;rank=1 scaffold_86 . repeat_region 49692 49957 . + . description=GypsyPi-1c_LTR scaffold_86 . biological_region 55548 55550 0.999 - . logic_name=eponine scaffold_86 . exon 48907 48949 . - . ID=Phyra83289.1;Parent=Phyra83289;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_86 . repeat_region 58416 58758 . ? . description=dust scaffold_86 . repeat_region 60130 60180 . ? . description=dust scaffold_86 . repeat_region 62936 62944 . ? . description=dust scaffold_86 ensembl protein_coding_gene 64176 65510 . + . ID=Phyra72098;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_86000002;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 64176 65510 . + . ID=Phyra72098;Parent=Phyra72098;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 64176 65510 . + 0 ID=Phyra72098;Parent=Phyra72098;rank=1 scaffold_86 . exon 64176 65510 . + . ID=Phyra72098.1;Parent=Phyra72098;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 61667 62797 . - . ID=Phyra83290;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000007;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 61667 62797 . - . ID=Phyra83290;Parent=Phyra83290;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 61667 62797 . - 0 ID=Phyra83290;Parent=Phyra83290;rank=1 scaffold_86 . exon 61667 62797 . - . ID=Phyra83290.1;Parent=Phyra83290;constitutive=1;rank=1 scaffold_86 . biological_region 70001 70005 0.999 - . logic_name=eponine scaffold_86 ensembl protein_coding_gene 68514 69686 . - . ID=Phyra83292;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000009;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 68514 69686 . - . ID=Phyra83292;Parent=Phyra83292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 68514 69686 . - 0 ID=Phyra83292;Parent=Phyra83292;rank=1 scaffold_86 . exon 68514 69686 . - . ID=Phyra83292.1;Parent=Phyra83292;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 71048 72241 . - . ID=Phyra83293;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000010;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 71048 72241 . - . ID=Phyra83293;Parent=Phyra83293;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 71048 72241 . - 0 ID=Phyra83293;Parent=Phyra83293;rank=1 scaffold_86 . exon 71048 72241 . - . ID=Phyra83293.1;Parent=Phyra83293;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 73971 74730 . - . ID=Phyra83294;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000011;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 73971 74730 . - . ID=Phyra83294;Parent=Phyra83294;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 73971 74012 . - 0 ID=Phyra83294;Parent=Phyra83294;rank=2 scaffold_86 . exon 73971 74012 . - . ID=Phyra83294.2;Parent=Phyra83294;constitutive=1;rank=2 scaffold_86 . CDS 74179 74730 . - 0 ID=Phyra83294;Parent=Phyra83294;rank=1 scaffold_86 . exon 74179 74730 . - . ID=Phyra83294.1;Parent=Phyra83294;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 76021 77041 . - . ID=Phyra83295;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000012;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 76021 77041 . - . ID=Phyra83295;Parent=Phyra83295;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 76021 76043 . - 0 ID=Phyra83295;Parent=Phyra83295;rank=2 scaffold_86 . exon 76021 76043 . - . ID=Phyra83295.2;Parent=Phyra83295;constitutive=1;ensembl_phase=1;rank=2 scaffold_86 . CDS 76234 77041 . - 0 ID=Phyra83295;Parent=Phyra83295;rank=1 scaffold_86 . exon 76234 77041 . - . ID=Phyra83295.1;Parent=Phyra83295;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_86 . repeat_region 84761 84768 . ? . description=dust scaffold_86 . repeat_region 86320 86327 . ? . description=dust scaffold_86 ensembl protein_coding_gene 80671 81816 . + . ID=Phyra83296;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000013;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 80671 81816 . + . ID=Phyra83296;Parent=Phyra83296;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 80671 81816 . + 0 ID=Phyra83296;Parent=Phyra83296;rank=1 scaffold_86 . exon 80671 81816 . + . ID=Phyra83296.1;Parent=Phyra83296;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 84822 86003 . - . ID=Phyra83298;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000015;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 84822 86003 . - . ID=Phyra83298;Parent=Phyra83298;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 84822 86003 . - 0 ID=Phyra83298;Parent=Phyra83298;rank=1 scaffold_86 . exon 84822 86003 . - . ID=Phyra83298.1;Parent=Phyra83298;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 86382 87572 . - . ID=Phyra83299;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000016;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 86382 87572 . - . ID=Phyra83299;Parent=Phyra83299;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 86382 87572 . - 0 ID=Phyra83299;Parent=Phyra83299;rank=1 scaffold_86 . exon 86382 87572 . - . ID=Phyra83299.1;Parent=Phyra83299;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 82859 84103 . + . ID=Phyra96577;biotype=protein_coding;external_name=C_scaffold_86000002;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 82859 84103 . + . ID=Phyra96577;Parent=Phyra96577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 82859 83067 . + 0 ID=Phyra96577;Parent=Phyra96577;rank=1 scaffold_86 . exon 82859 83067 . + . ID=Phyra96577.1;Parent=Phyra96577;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 . CDS 83098 83428 . + 0 ID=Phyra96577;Parent=Phyra96577;rank=2 scaffold_86 . exon 83098 83428 . + . ID=Phyra96577.2;Parent=Phyra96577;constitutive=1;ensembl_phase=2;rank=2 scaffold_86 . CDS 83495 83773 . + 0 ID=Phyra96577;Parent=Phyra96577;rank=3 scaffold_86 . exon 83495 83773 . + . ID=Phyra96577.3;Parent=Phyra96577;constitutive=1;rank=3 scaffold_86 . CDS 83798 84103 . + 0 ID=Phyra96577;Parent=Phyra96577;rank=4 scaffold_86 . exon 83798 84103 . + . ID=Phyra96577.4;Parent=Phyra96577;constitutive=1;rank=4 scaffold_86 . biological_region 90742 90747 0.999 - . logic_name=eponine scaffold_86 . biological_region 94432 94433 0.999 - . logic_name=eponine scaffold_86 . biological_region 94476 94479 0.999 - . logic_name=eponine scaffold_86 ensembl protein_coding_gene 93127 94596 . - . ID=Phyra72099;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_86000003;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 93127 94596 . - . ID=Phyra72099;Parent=Phyra72099;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 93127 94596 . - 0 ID=Phyra72099;Parent=Phyra72099;rank=1 scaffold_86 . exon 93127 94596 . - . ID=Phyra72099.1;Parent=Phyra72099;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 88267 89457 . - . ID=Phyra83300;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000017;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 88267 89457 . - . ID=Phyra83300;Parent=Phyra83300;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 88267 89457 . - 0 ID=Phyra83300;Parent=Phyra83300;rank=1 scaffold_86 . exon 88267 89457 . - . ID=Phyra83300.1;Parent=Phyra83300;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 89997 91232 . - . ID=Phyra83301;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000018;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 89997 91232 . - . ID=Phyra83301;Parent=Phyra83301;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 89997 91232 . - 0 ID=Phyra83301;Parent=Phyra83301;rank=1 scaffold_86 . exon 89997 91232 . - . ID=Phyra83301.1;Parent=Phyra83301;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 92044 93027 . + . ID=Phyra83302;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000019;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 92044 93027 . + . ID=Phyra83302;Parent=Phyra83302;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 92044 93027 . + 0 ID=Phyra83302;Parent=Phyra83302;rank=1 scaffold_86 . exon 92044 93027 . + . ID=Phyra83302.1;Parent=Phyra83302;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 95376 96548 . - . ID=Phyra83304;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000021;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 95376 96548 . - . ID=Phyra83304;Parent=Phyra83304;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 95376 96548 . - 0 ID=Phyra83304;Parent=Phyra83304;rank=1 scaffold_86 . exon 95376 96548 . - . ID=Phyra83304.1;Parent=Phyra83304;constitutive=1;rank=1 scaffold_86 ensembl snoRNA_gene 106489 106713 . + . ID=EPrPRAG00000000105;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_86 ensembl snoRNA 106489 106713 . + . ID=EPrPRAT00000000105;Parent=EPrPRAG00000000105;biotype=snoRNA;logic_name=ncrna_eg scaffold_86 . exon 106489 106713 . + . ID=EPrPRAE00000000105;Parent=EPrPRAT00000000105;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 100834 101616 . - . ID=Phyra72100;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_86000004;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 100834 101616 . - . ID=Phyra72100;Parent=Phyra72100;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 100834 101616 . - 0 ID=Phyra72100;Parent=Phyra72100;rank=1 scaffold_86 . exon 100834 101616 . - . ID=Phyra72100.1;Parent=Phyra72100;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 103184 103883 . - . ID=Phyra83306;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000023;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 103184 103883 . - . ID=Phyra83306;Parent=Phyra83306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 103184 103216 . - 0 ID=Phyra83306;Parent=Phyra83306;rank=2 scaffold_86 . exon 103184 103216 . - . ID=Phyra83306.2;Parent=Phyra83306;constitutive=1;rank=2 scaffold_86 . CDS 103260 103883 . - 0 ID=Phyra83306;Parent=Phyra83306;rank=1 scaffold_86 . exon 103260 103883 . - . ID=Phyra83306.1;Parent=Phyra83306;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 106604 107492 . + . ID=Phyra83307;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000024;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 106604 107492 . + . ID=Phyra83307;Parent=Phyra83307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 106604 106687 . + 0 ID=Phyra83307;Parent=Phyra83307;rank=1 scaffold_86 . exon 106604 106687 . + . ID=Phyra83307.1;Parent=Phyra83307;constitutive=1;rank=1 scaffold_86 . CDS 107077 107224 . + 0 ID=Phyra83307;Parent=Phyra83307;rank=2 scaffold_86 . CDS 107344 107492 . + 0 ID=Phyra83307;Parent=Phyra83307;rank=3 scaffold_86 . biological_region 107397 107400 0.999 + . logic_name=eponine scaffold_86 . repeat_region 108456 108466 . ? . description=dust scaffold_86 . biological_region 110640 110646 0.999 - . logic_name=eponine scaffold_86 . biological_region 110657 110663 0.999 - . logic_name=eponine scaffold_86 . biological_region 111412 111416 0.999 + . logic_name=eponine scaffold_86 ensembl protein_coding_gene 110619 112715 . + . ID=Phyra53904;biotype=protein_coding;external_name=gwEuk.86.22.1;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 110619 112715 . + . ID=Phyra53904;Parent=Phyra53904;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 110619 112715 . + 0 ID=Phyra53904;Parent=Phyra53904;rank=1 scaffold_86 . exon 110619 112715 . + . ID=Phyra53904.1;Parent=Phyra53904;constitutive=1;rank=1 scaffold_86 . exon 107077 107224 . + . ID=Phyra83307.2;Parent=Phyra83307;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_86 . exon 107344 107492 . + . ID=Phyra83307.3;Parent=Phyra83307;constitutive=1;ensembl_phase=1;rank=3 scaffold_86 ensembl protein_coding_gene 108673 110091 . + . ID=Phyra83308;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000025;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 108673 110091 . + . ID=Phyra83308;Parent=Phyra83308;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 108673 109245 . + 0 ID=Phyra83308;Parent=Phyra83308;rank=1 scaffold_86 . exon 108673 109245 . + . ID=Phyra83308.1;Parent=Phyra83308;constitutive=1;rank=1 scaffold_86 . CDS 109311 109601 . + 0 ID=Phyra83308;Parent=Phyra83308;rank=2 scaffold_86 . exon 109311 109601 . + . ID=Phyra83308.2;Parent=Phyra83308;constitutive=1;rank=2 scaffold_86 . CDS 109672 110091 . + 0 ID=Phyra83308;Parent=Phyra83308;rank=3 scaffold_86 . exon 109672 110091 . + . ID=Phyra83308.3;Parent=Phyra83308;constitutive=1;rank=3 scaffold_86 ensembl protein_coding_gene 113093 114298 . + . ID=Phyra83310;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000027;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 113093 114298 . + . ID=Phyra83310;Parent=Phyra83310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 113093 114298 . + 0 ID=Phyra83310;Parent=Phyra83310;rank=1 scaffold_86 . exon 113093 114298 . + . ID=Phyra83310.1;Parent=Phyra83310;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 115062 116276 . + . ID=Phyra83311;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000028;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 115062 116276 . + . ID=Phyra83311;Parent=Phyra83311;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 115062 116276 . + 0 ID=Phyra83311;Parent=Phyra83311;rank=1 scaffold_86 . exon 115062 116276 . + . ID=Phyra83311.1;Parent=Phyra83311;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 117677 118954 . + . ID=Phyra83312;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000029;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 117677 118954 . + . ID=Phyra83312;Parent=Phyra83312;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 117677 118784 . + 0 ID=Phyra83312;Parent=Phyra83312;rank=1 scaffold_86 . exon 117677 118784 . + . ID=Phyra83312.1;Parent=Phyra83312;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_86 . CDS 118932 118954 . + 0 ID=Phyra83312;Parent=Phyra83312;rank=2 scaffold_86 . exon 118932 118954 . + . ID=Phyra83312.2;Parent=Phyra83312;constitutive=1;ensembl_phase=1;rank=2 scaffold_86 ensembl protein_coding_gene 119635 120831 . + . ID=Phyra83313;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000030;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 119635 120831 . + . ID=Phyra83313;Parent=Phyra83313;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 119635 120831 . + 0 ID=Phyra83313;Parent=Phyra83313;rank=1 scaffold_86 . exon 119635 120831 . + . ID=Phyra83313.1;Parent=Phyra83313;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 121609 122805 . + . ID=Phyra83314;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000031;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 121609 122805 . + . ID=Phyra83314;Parent=Phyra83314;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 121609 122805 . + 0 ID=Phyra83314;Parent=Phyra83314;rank=1 scaffold_86 . exon 121609 122805 . + . ID=Phyra83314.1;Parent=Phyra83314;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 123598 124788 . + . ID=Phyra83315;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000032;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 123598 124788 . + . ID=Phyra83315;Parent=Phyra83315;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 123598 124788 . + 0 ID=Phyra83315;Parent=Phyra83315;rank=1 scaffold_86 . exon 123598 124788 . + . ID=Phyra83315.1;Parent=Phyra83315;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 125601 126821 . + . ID=Phyra83316;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000033;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 125601 126821 . + . ID=Phyra83316;Parent=Phyra83316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 125601 126821 . + 0 ID=Phyra83316;Parent=Phyra83316;rank=1 scaffold_86 . exon 125601 126821 . + . ID=Phyra83316.1;Parent=Phyra83316;constitutive=1;rank=1 scaffold_86 . repeat_region 127543 127568 . ? . description=dust scaffold_86 . repeat_region 127545 127568 . ? . description=trf scaffold_86 . repeat_region 128386 128410 . ? . description=trf scaffold_86 . repeat_region 132193 132200 . ? . description=dust scaffold_86 . repeat_region 133567 133574 . ? . description=dust scaffold_86 . biological_region 134200 134204 0.999 - . logic_name=eponine scaffold_86 . biological_region 134849 134851 0.999 - . logic_name=eponine scaffold_86 . repeat_region 135748 135779 . ? . description=trf scaffold_86 ensembl protein_coding_gene 126940 128507 . - . ID=Phyra83317;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000034;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 126940 128507 . - . ID=Phyra83317;Parent=Phyra83317;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 126940 128347 . - 0 ID=Phyra83317;Parent=Phyra83317;rank=2 scaffold_86 . exon 126940 128347 . - . ID=Phyra83317.2;Parent=Phyra83317;constitutive=1;ensembl_phase=2;rank=2 scaffold_86 . CDS 128425 128507 . - 0 ID=Phyra83317;Parent=Phyra83317;rank=1 scaffold_86 . exon 128425 128507 . - . ID=Phyra83317.1;Parent=Phyra83317;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 ensembl protein_coding_gene 128980 129775 . + . ID=Phyra83318;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000035;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 128980 129775 . + . ID=Phyra83318;Parent=Phyra83318;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 128980 129149 . + 0 ID=Phyra83318;Parent=Phyra83318;rank=1 scaffold_86 . exon 128980 129149 . + . ID=Phyra83318.1;Parent=Phyra83318;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 . CDS 129220 129775 . + 0 ID=Phyra83318;Parent=Phyra83318;rank=2 scaffold_86 . exon 129220 129775 . + . ID=Phyra83318.2;Parent=Phyra83318;constitutive=1;ensembl_phase=2;rank=2 scaffold_86 ensembl protein_coding_gene 130295 131733 . + . ID=Phyra83319;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000036;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 130295 131733 . + . ID=Phyra83319;Parent=Phyra83319;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 130295 131617 . + 0 ID=Phyra83319;Parent=Phyra83319;rank=1 scaffold_86 . exon 130295 131617 . + . ID=Phyra83319.1;Parent=Phyra83319;constitutive=1;rank=1 scaffold_86 . CDS 131731 131733 . + 0 ID=Phyra83319;Parent=Phyra83319;rank=2 scaffold_86 . exon 131731 131733 . + . ID=Phyra83319.2;Parent=Phyra83319;constitutive=1;rank=2 scaffold_86 ensembl protein_coding_gene 134474 136231 . + . ID=Phyra83320;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000037;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 134474 136231 . + . ID=Phyra83320;Parent=Phyra83320;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 134474 136231 . + 0 ID=Phyra83320;Parent=Phyra83320;rank=1 scaffold_86 . exon 134474 136231 . + . ID=Phyra83320.1;Parent=Phyra83320;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 138343 139701 . + . ID=Phyra72102;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_86000006;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 138343 139701 . + . ID=Phyra72102;Parent=Phyra72102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 138343 139701 . + 0 ID=Phyra72102;Parent=Phyra72102;rank=1 scaffold_86 . exon 138343 139701 . + . ID=Phyra72102.1;Parent=Phyra72102;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 140080 142020 . - . ID=Phyra83322;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000039;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 140080 142020 . - . ID=Phyra83322;Parent=Phyra83322;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 140080 142020 . - 0 ID=Phyra83322;Parent=Phyra83322;rank=1 scaffold_86 . exon 140080 142020 . - . ID=Phyra83322.1;Parent=Phyra83322;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 142431 144336 . - . ID=Phyra83323;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000040;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 142431 144336 . - . ID=Phyra83323;Parent=Phyra83323;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 142431 144173 . - 0 ID=Phyra83323;Parent=Phyra83323;rank=2 scaffold_86 . exon 142431 144173 . - . ID=Phyra83323.2;Parent=Phyra83323;constitutive=1;rank=2 scaffold_86 . CDS 144325 144336 . - 0 ID=Phyra83323;Parent=Phyra83323;rank=1 scaffold_86 . exon 144325 144336 . - . ID=Phyra83323.1;Parent=Phyra83323;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 144907 147174 . + . ID=Phyra83324;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000041;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 144907 147174 . + . ID=Phyra83324;Parent=Phyra83324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 144907 147174 . + 0 ID=Phyra83324;Parent=Phyra83324;rank=1 scaffold_86 . exon 144907 147174 . + . ID=Phyra83324.1;Parent=Phyra83324;constitutive=1;rank=1 scaffold_86 . repeat_region 152213 152221 . ? . description=dust scaffold_86 ensembl protein_coding_gene 147498 149201 . - . ID=Phyra83325;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000042;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 147498 149201 . - . ID=Phyra83325;Parent=Phyra83325;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 147498 149201 . - 0 ID=Phyra83325;Parent=Phyra83325;rank=1 scaffold_86 . exon 147498 149201 . - . ID=Phyra83325.1;Parent=Phyra83325;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 153267 154937 . + . ID=Phyra83326;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000043;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 153267 154937 . + . ID=Phyra83326;Parent=Phyra83326;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 153267 154937 . + 0 ID=Phyra83326;Parent=Phyra83326;rank=1 scaffold_86 . exon 153267 154937 . + . ID=Phyra83326.1;Parent=Phyra83326;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 155155 156717 . + . ID=Phyra83327;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000044;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 155155 156717 . + . ID=Phyra83327;Parent=Phyra83327;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 155155 156717 . + 0 ID=Phyra83327;Parent=Phyra83327;rank=1 scaffold_86 . exon 155155 156717 . + . ID=Phyra83327.1;Parent=Phyra83327;constitutive=1;rank=1 scaffold_86 . repeat_region 159270 159291 . ? . description=trf scaffold_86 . biological_region 159495 159498 0.999 - . logic_name=eponine scaffold_86 . biological_region 161249 161253 0.999 + . logic_name=eponine scaffold_86 . biological_region 162425 162428 0.999 + . logic_name=eponine scaffold_86 . biological_region 164201 164205 0.999 + . logic_name=eponine scaffold_86 . biological_region 164496 164503 0.999 - . logic_name=eponine scaffold_86 . biological_region 164601 164605 0.999 - . logic_name=eponine scaffold_86 ensembl protein_coding_gene 156818 159055 . - . ID=Phyra83328;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000045;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 156818 159055 . - . ID=Phyra83328;Parent=Phyra83328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 156818 159055 . - 0 ID=Phyra83328;Parent=Phyra83328;rank=1 scaffold_86 . exon 156818 159055 . - . ID=Phyra83328.1;Parent=Phyra83328;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 159221 160501 . - . ID=Phyra83329;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000046;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 159221 160501 . - . ID=Phyra83329;Parent=Phyra83329;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 159221 160501 . - 0 ID=Phyra83329;Parent=Phyra83329;rank=1 scaffold_86 . exon 159221 160501 . - . ID=Phyra83329.1;Parent=Phyra83329;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 161653 162912 . + . ID=Phyra83330;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000047;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 161653 162912 . + . ID=Phyra83330;Parent=Phyra83330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 161653 162912 . + 0 ID=Phyra83330;Parent=Phyra83330;rank=1 scaffold_86 . exon 161653 162912 . + . ID=Phyra83330.1;Parent=Phyra83330;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 163143 164366 . - . ID=Phyra83331;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000048;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 163143 164366 . - . ID=Phyra83331;Parent=Phyra83331;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 163143 164366 . - 0 ID=Phyra83331;Parent=Phyra83331;rank=1 scaffold_86 . exon 163143 164366 . - . ID=Phyra83331.1;Parent=Phyra83331;constitutive=1;rank=1 scaffold_86 . repeat_region 171060 171380 . ? . description=dust scaffold_86 ensembl protein_coding_gene 167373 168938 . - . ID=Phyra53914;biotype=protein_coding;external_name=gwEuk.86.32.1;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 167373 168938 . - . ID=Phyra53914;Parent=Phyra53914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 167373 167882 . - 0 ID=Phyra53914;Parent=Phyra53914;rank=4 scaffold_86 . exon 167373 167882 . - . ID=Phyra53914.4;Parent=Phyra53914;constitutive=1;rank=4 scaffold_86 . CDS 167960 168268 . - 0 ID=Phyra53914;Parent=Phyra53914;rank=3 scaffold_86 . exon 167960 168268 . - . ID=Phyra53914.3;Parent=Phyra53914;constitutive=1;rank=3 scaffold_86 . CDS 168341 168425 . - 0 ID=Phyra53914;Parent=Phyra53914;rank=2 scaffold_86 . exon 168341 168425 . - . ID=Phyra53914.2;Parent=Phyra53914;constitutive=1;ensembl_phase=2;rank=2 scaffold_86 . CDS 168487 168938 . - 0 ID=Phyra53914;Parent=Phyra53914;rank=1 scaffold_86 . exon 168487 168938 . - . ID=Phyra53914.1;Parent=Phyra53914;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 ensembl protein_coding_gene 166030 167124 . - . ID=Phyra83332;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000049;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 166030 167124 . - . ID=Phyra83332;Parent=Phyra83332;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 166030 167124 . - 0 ID=Phyra83332;Parent=Phyra83332;rank=1 scaffold_86 . exon 166030 167124 . - . ID=Phyra83332.1;Parent=Phyra83332;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 169769 170251 . - . ID=Phyra96580;biotype=protein_coding;external_name=C_scaffold_86000005;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 169769 170251 . - . ID=Phyra96580;Parent=Phyra96580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 169769 170251 . - 0 ID=Phyra96580;Parent=Phyra96580;rank=1 scaffold_86 . exon 169769 170251 . - . ID=Phyra96580.1;Parent=Phyra96580;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 184043 185666 . - . ID=Phyra83336;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000053;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 184043 185666 . - . ID=Phyra83336;Parent=Phyra83336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 184043 184084 . - 0 ID=Phyra83336;Parent=Phyra83336;rank=3 scaffold_86 . exon 184043 184084 . - . ID=Phyra83336.3;Parent=Phyra83336;constitutive=1;rank=3 scaffold_86 . CDS 184218 184285 . - 0 ID=Phyra83336;Parent=Phyra83336;rank=2 scaffold_86 . exon 184218 184285 . - . ID=Phyra83336.2;Parent=Phyra83336;constitutive=1;ensembl_phase=1;rank=2 scaffold_86 . CDS 184316 185666 . - 0 ID=Phyra83336;Parent=Phyra83336;rank=1 scaffold_86 . repeat_region 184594 184601 . ? . description=dust scaffold_86 . biological_region 186568 186571 0.999 + . logic_name=eponine scaffold_86 . biological_region 189449 189450 0.999 - . logic_name=eponine scaffold_86 . repeat_region 192084 192100 . ? . description=dust scaffold_86 . exon 184316 185666 . - . ID=Phyra83336.1;Parent=Phyra83336;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_86 ensembl protein_coding_gene 188677 189000 . - . ID=Phyra83337;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000054;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 188677 189000 . - . ID=Phyra83337;Parent=Phyra83337;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 188677 189000 . - 0 ID=Phyra83337;Parent=Phyra83337;rank=1 scaffold_86 . exon 188677 189000 . - . ID=Phyra83337.1;Parent=Phyra83337;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 192272 194314 . + . ID=Phyra83338;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000055;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 192272 194314 . + . ID=Phyra83338;Parent=Phyra83338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 192272 192286 . + 0 ID=Phyra83338;Parent=Phyra83338;rank=1 scaffold_86 . exon 192272 192286 . + . ID=Phyra83338.1;Parent=Phyra83338;constitutive=1;rank=1 scaffold_86 . CDS 192525 193033 . + 0 ID=Phyra83338;Parent=Phyra83338;rank=2 scaffold_86 . exon 192525 193033 . + . ID=Phyra83338.2;Parent=Phyra83338;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_86 . CDS 193114 193867 . + 0 ID=Phyra83338;Parent=Phyra83338;rank=3 scaffold_86 . exon 193114 193867 . + . ID=Phyra83338.3;Parent=Phyra83338;constitutive=1;ensembl_phase=2;rank=3 scaffold_86 . CDS 193946 194064 . + 0 ID=Phyra83338;Parent=Phyra83338;rank=4 scaffold_86 . exon 193946 194064 . + . ID=Phyra83338.4;Parent=Phyra83338;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_86 . CDS 194211 194239 . + 0 ID=Phyra83338;Parent=Phyra83338;rank=5 scaffold_86 . CDS 194304 194314 . + 0 ID=Phyra83338;Parent=Phyra83338;rank=6 scaffold_86 . repeat_region 201525 201553 . ? . description=trf scaffold_86 . repeat_region 201547 201585 . ? . description=trf scaffold_86 . repeat_region 201683 201749 . + . description=(TCCG)n scaffold_86 . repeat_region 201685 201739 . ? . description=trf scaffold_86 ensembl protein_coding_gene 197324 197701 . + . ID=Phyra53887;biotype=protein_coding;external_name=gwEuk.86.5.1;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 197324 197701 . + . ID=Phyra53887;Parent=Phyra53887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 197324 197701 . + 0 ID=Phyra53887;Parent=Phyra53887;rank=1 scaffold_86 . exon 197324 197701 . + . ID=Phyra53887.1;Parent=Phyra53887;constitutive=1;rank=1 scaffold_86 . exon 194211 194239 . + . ID=Phyra83338.5;Parent=Phyra83338;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_86 . exon 194304 194314 . + . ID=Phyra83338.6;Parent=Phyra83338;constitutive=1;ensembl_phase=1;rank=6 scaffold_86 ensembl protein_coding_gene 196095 196844 . - . ID=Phyra83339;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_86000056;logic_name=jgi_phyra1 scaffold_86 ensembl transcript 196095 196844 . - . ID=Phyra83339;Parent=Phyra83339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_86 . CDS 196095 196844 . - 0 ID=Phyra83339;Parent=Phyra83339;rank=1 scaffold_86 . exon 196095 196844 . - . ID=Phyra83339.1;Parent=Phyra83339;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_85 1 206340 scaffold_85 . repeat_region 1385 1434 . ? . description=dust scaffold_85 . repeat_region 1832 1841 . ? . description=dust scaffold_85 . repeat_region 2579 3337 . ? . description=dust scaffold_85 . repeat_region 4274 4316 . ? . description=trf scaffold_85 . repeat_region 4534 4892 . ? . description=dust scaffold_85 . biological_region 4875 4877 0.999 - . logic_name=eponine scaffold_85 . biological_region 4931 4932 0.999 + . logic_name=eponine scaffold_85 . biological_region 4970 4974 0.999 + . logic_name=eponine scaffold_85 . biological_region 5027 5029 0.999 - . logic_name=eponine scaffold_85 . repeat_region 5068 5098 . ? . description=trf scaffold_85 . repeat_region 5330 5391 . + . description=(CGTG)n scaffold_85 . repeat_region 5333 5386 . ? . description=dust scaffold_85 . repeat_region 5335 5391 . ? . description=trf scaffold_85 . biological_region 5436 5443 0.999 - . logic_name=eponine scaffold_85 . repeat_region 6606 6716 . ? . description=trf scaffold_85 ensembl tRNA_gene 5212 5297 . + . ID=EPrPRAG00000000065;biotype=tRNA;description=tRNA-Leu for anticodon AAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_85 ensembl transcript 5212 5297 . + . ID=EPrPRAT00000000065;Parent=EPrPRAG00000000065;biotype=tRNA;logic_name=ncrna_eg scaffold_85 . exon 5212 5297 . + . ID=EPrPRAE00000000065;Parent=EPrPRAT00000000065;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 ensembl protein_coding_gene 66 1555 . + . ID=Phyra83229;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000001;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 66 1555 . + . ID=Phyra83229;Parent=Phyra83229;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 66 1323 . + 0 ID=Phyra83229;Parent=Phyra83229;rank=1 scaffold_85 . exon 66 1323 . + . ID=Phyra83229.1;Parent=Phyra83229;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 . CDS 1512 1555 . + 0 ID=Phyra83229;Parent=Phyra83229;rank=2 scaffold_85 . exon 1512 1555 . + . ID=Phyra83229.2;Parent=Phyra83229;constitutive=1;ensembl_phase=1;rank=2 scaffold_85 ensembl protein_coding_gene 3371 4180 . + . ID=Phyra83230;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000002;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 3371 4180 . + . ID=Phyra83230;Parent=Phyra83230;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 3371 3787 . + 0 ID=Phyra83230;Parent=Phyra83230;rank=1 scaffold_85 . exon 3371 3787 . + . ID=Phyra83230.1;Parent=Phyra83230;constitutive=1;rank=1 scaffold_85 . CDS 3812 4180 . + 0 ID=Phyra83230;Parent=Phyra83230;rank=2 scaffold_85 . exon 3812 4180 . + . ID=Phyra83230.2;Parent=Phyra83230;constitutive=1;rank=2 scaffold_85 ensembl protein_coding_gene 5908 7001 . + . ID=Phyra83231;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000003;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 5908 7001 . + . ID=Phyra83231;Parent=Phyra83231;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 5908 6004 . + 0 ID=Phyra83231;Parent=Phyra83231;rank=1 scaffold_85 . exon 5908 6004 . + . ID=Phyra83231.1;Parent=Phyra83231;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 . CDS 6277 6390 . + 0 ID=Phyra83231;Parent=Phyra83231;rank=2 scaffold_85 . exon 6277 6390 . + . ID=Phyra83231.2;Parent=Phyra83231;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_85 . CDS 6410 6642 . + 0 ID=Phyra83231;Parent=Phyra83231;rank=3 scaffold_85 . exon 6410 6642 . + . ID=Phyra83231.3;Parent=Phyra83231;constitutive=1;ensembl_phase=1;rank=3 scaffold_85 . CDS 6726 7001 . + 0 ID=Phyra83231;Parent=Phyra83231;rank=4 scaffold_85 . exon 6726 7001 . + . ID=Phyra83231.4;Parent=Phyra83231;constitutive=1;rank=4 scaffold_85 ensembl protein_coding_gene 14720 15739 . + . ID=Phyra53850;biotype=protein_coding;external_name=gwEuk.85.2.1;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 14720 15739 . + . ID=Phyra53850;Parent=Phyra53850;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 14720 15739 . + 0 ID=Phyra53850;Parent=Phyra53850;rank=1 scaffold_85 . exon 14720 15739 . + . ID=Phyra53850.1;Parent=Phyra53850;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 19151 20380 . - . ID=Phyra72093;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_85000001;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 19151 20380 . - . ID=Phyra72093;Parent=Phyra72093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 19151 20380 . - 0 ID=Phyra72093;Parent=Phyra72093;rank=1 scaffold_85 . exon 19151 20380 . - . ID=Phyra72093.1;Parent=Phyra72093;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 10844 14245 . - . ID=Phyra83232;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000004;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 10844 14245 . - . ID=Phyra83232;Parent=Phyra83232;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 10844 11426 . - 0 ID=Phyra83232;Parent=Phyra83232;rank=7 scaffold_85 . exon 10844 11426 . - . ID=Phyra83232.7;Parent=Phyra83232;constitutive=1;ensembl_phase=2;rank=7 scaffold_85 . CDS 11492 11539 . - 0 ID=Phyra83232;Parent=Phyra83232;rank=6 scaffold_85 . exon 11492 11539 . - . ID=Phyra83232.6;Parent=Phyra83232;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_85 . CDS 12158 12397 . - 0 ID=Phyra83232;Parent=Phyra83232;rank=5 scaffold_85 . exon 12158 12397 . - . ID=Phyra83232.5;Parent=Phyra83232;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_85 . CDS 12852 13115 . - 0 ID=Phyra83232;Parent=Phyra83232;rank=4 scaffold_85 . exon 12852 13115 . - . ID=Phyra83232.4;Parent=Phyra83232;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_85 . CDS 13157 13451 . - 0 ID=Phyra83232;Parent=Phyra83232;rank=3 scaffold_85 . exon 13157 13451 . - . ID=Phyra83232.3;Parent=Phyra83232;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_85 . CDS 13523 13680 . - 0 ID=Phyra83232;Parent=Phyra83232;rank=2 scaffold_85 . exon 13523 13680 . - . ID=Phyra83232.2;Parent=Phyra83232;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_85 . CDS 14058 14245 . - 0 ID=Phyra83232;Parent=Phyra83232;rank=1 scaffold_85 . exon 14058 14245 . - . ID=Phyra83232.1;Parent=Phyra83232;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 ensembl protein_coding_gene 16582 17616 . + . ID=Phyra83234;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000006;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 16582 17616 . + . ID=Phyra83234;Parent=Phyra83234;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 16582 17616 . + 0 ID=Phyra83234;Parent=Phyra83234;rank=1 scaffold_85 . exon 16582 17616 . + . ID=Phyra83234.1;Parent=Phyra83234;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 18079 18967 . + . ID=Phyra96557;biotype=protein_coding;external_name=C_scaffold_85000001;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 18079 18967 . + . ID=Phyra96557;Parent=Phyra96557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 18079 18452 . + 0 ID=Phyra96557;Parent=Phyra96557;rank=1 scaffold_85 . exon 18079 18452 . + . ID=Phyra96557.1;Parent=Phyra96557;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 . CDS 18513 18821 . + 0 ID=Phyra96557;Parent=Phyra96557;rank=2 scaffold_85 . exon 18513 18821 . + . ID=Phyra96557.2;Parent=Phyra96557;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_85 . CDS 18880 18967 . + 0 ID=Phyra96557;Parent=Phyra96557;rank=3 scaffold_85 . exon 18880 18967 . + . ID=Phyra96557.3;Parent=Phyra96557;constitutive=1;ensembl_phase=2;rank=3 scaffold_85 . biological_region 22693 22698 0.999 - . logic_name=eponine scaffold_85 . repeat_region 27734 27760 . ? . description=trf scaffold_85 . biological_region 28518 28522 0.999 - . logic_name=eponine scaffold_85 ensembl protein_coding_gene 22438 25227 . + . ID=Phyra83237;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000009;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 22438 25227 . + . ID=Phyra83237;Parent=Phyra83237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 22438 25227 . + 0 ID=Phyra83237;Parent=Phyra83237;rank=1 scaffold_85 . exon 22438 25227 . + . ID=Phyra83237.1;Parent=Phyra83237;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 26848 27569 . + . ID=Phyra83238;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000010;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 26848 27569 . + . ID=Phyra83238;Parent=Phyra83238;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 26848 26949 . + 0 ID=Phyra83238;Parent=Phyra83238;rank=1 scaffold_85 . exon 26848 26949 . + . ID=Phyra83238.1;Parent=Phyra83238;constitutive=1;rank=1 scaffold_85 . CDS 27027 27569 . + 0 ID=Phyra83238;Parent=Phyra83238;rank=2 scaffold_85 . exon 27027 27569 . + . ID=Phyra83238.2;Parent=Phyra83238;constitutive=1;rank=2 scaffold_85 ensembl protein_coding_gene 27670 29134 . - . ID=Phyra83239;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000011;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 27670 29134 . - . ID=Phyra83239;Parent=Phyra83239;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 27670 28789 . - 0 ID=Phyra83239;Parent=Phyra83239;rank=2 scaffold_85 . exon 27670 28789 . - . ID=Phyra83239.2;Parent=Phyra83239;constitutive=1;ensembl_phase=2;rank=2 scaffold_85 . CDS 28860 29134 . - 0 ID=Phyra83239;Parent=Phyra83239;rank=1 scaffold_85 . exon 28860 29134 . - . ID=Phyra83239.1;Parent=Phyra83239;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 ensembl protein_coding_gene 29235 29886 . + . ID=Phyra83240;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000012;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 29235 29886 . + . ID=Phyra83240;Parent=Phyra83240;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 29235 29308 . + 0 ID=Phyra83240;Parent=Phyra83240;rank=1 scaffold_85 . exon 29235 29308 . + . ID=Phyra83240.1;Parent=Phyra83240;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 . CDS 29336 29472 . + 0 ID=Phyra83240;Parent=Phyra83240;rank=2 scaffold_85 . exon 29336 29472 . + . ID=Phyra83240.2;Parent=Phyra83240;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_85 . CDS 29545 29591 . + 0 ID=Phyra83240;Parent=Phyra83240;rank=3 scaffold_85 . CDS 29655 29723 . + 0 ID=Phyra83240;Parent=Phyra83240;rank=4 scaffold_85 . CDS 29800 29886 . + 0 ID=Phyra83240;Parent=Phyra83240;rank=5 scaffold_85 . repeat_region 33025 33057 . ? . description=dust scaffold_85 . exon 29545 29591 . + . ID=Phyra83240.3;Parent=Phyra83240;constitutive=1;ensembl_phase=1;rank=3 scaffold_85 . exon 29655 29723 . + . ID=Phyra83240.4;Parent=Phyra83240;constitutive=1;rank=4 scaffold_85 . exon 29800 29886 . + . ID=Phyra83240.5;Parent=Phyra83240;constitutive=1;rank=5 scaffold_85 ensembl protein_coding_gene 30052 32289 . - . ID=Phyra83241;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000013;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 30052 32289 . - . ID=Phyra83241;Parent=Phyra83241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 30052 32289 . - 0 ID=Phyra83241;Parent=Phyra83241;rank=1 scaffold_85 . exon 30052 32289 . - . ID=Phyra83241.1;Parent=Phyra83241;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 32505 36209 . + . ID=Phyra83242;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000014;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 32505 36209 . + . ID=Phyra83242;Parent=Phyra83242;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 32505 35114 . + 0 ID=Phyra83242;Parent=Phyra83242;rank=1 scaffold_85 . exon 32505 35114 . + . ID=Phyra83242.1;Parent=Phyra83242;constitutive=1;rank=1 scaffold_85 . CDS 35181 36209 . + 0 ID=Phyra83242;Parent=Phyra83242;rank=2 scaffold_85 . exon 35181 36209 . + . ID=Phyra83242.2;Parent=Phyra83242;constitutive=1;rank=2 scaffold_85 ensembl protein_coding_gene 36764 38680 . - . ID=Phyra83243;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000015;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 36764 38680 . - . ID=Phyra83243;Parent=Phyra83243;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 36764 38680 . - 0 ID=Phyra83243;Parent=Phyra83243;rank=1 scaffold_85 . exon 36764 38680 . - . ID=Phyra83243.1;Parent=Phyra83243;constitutive=1;rank=1 scaffold_85 . biological_region 39326 39328 0.999 + . logic_name=eponine scaffold_85 . repeat_region 44304 44705 . ? . description=trf scaffold_85 . biological_region 44454 44454 0.999 + . logic_name=eponine scaffold_85 ensembl protein_coding_gene 41477 43939 . + . ID=Phyra83244;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000016;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 41477 43939 . + . ID=Phyra83244;Parent=Phyra83244;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 41477 43842 . + 0 ID=Phyra83244;Parent=Phyra83244;rank=1 scaffold_85 . exon 41477 43842 . + . ID=Phyra83244.1;Parent=Phyra83244;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 . CDS 43909 43939 . + 0 ID=Phyra83244;Parent=Phyra83244;rank=2 scaffold_85 . exon 43909 43939 . + . ID=Phyra83244.2;Parent=Phyra83244;constitutive=1;ensembl_phase=2;rank=2 scaffold_85 ensembl protein_coding_gene 44270 44710 . - . ID=Phyra83245;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000017;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 44270 44710 . - . ID=Phyra83245;Parent=Phyra83245;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 44270 44710 . - 0 ID=Phyra83245;Parent=Phyra83245;rank=1 scaffold_85 . exon 44270 44710 . - . ID=Phyra83245.1;Parent=Phyra83245;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 45967 47804 . - . ID=Phyra83246;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000018;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 45967 47804 . - . ID=Phyra83246;Parent=Phyra83246;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 45967 46006 . - 0 ID=Phyra83246;Parent=Phyra83246;rank=7 scaffold_85 . exon 45967 46006 . - . ID=Phyra83246.7;Parent=Phyra83246;constitutive=1;ensembl_phase=2;rank=7 scaffold_85 . CDS 46081 46142 . - 0 ID=Phyra83246;Parent=Phyra83246;rank=6 scaffold_85 . exon 46081 46142 . - . ID=Phyra83246.6;Parent=Phyra83246;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_85 . CDS 46642 47118 . - 0 ID=Phyra83246;Parent=Phyra83246;rank=5 scaffold_85 . exon 46642 47118 . - . ID=Phyra83246.5;Parent=Phyra83246;constitutive=1;rank=5 scaffold_85 . CDS 47193 47378 . - 0 ID=Phyra83246;Parent=Phyra83246;rank=4 scaffold_85 . exon 47193 47378 . - . ID=Phyra83246.4;Parent=Phyra83246;constitutive=1;rank=4 scaffold_85 . CDS 47423 47548 . - 0 ID=Phyra83246;Parent=Phyra83246;rank=3 scaffold_85 . exon 47423 47548 . - . ID=Phyra83246.3;Parent=Phyra83246;constitutive=1;rank=3 scaffold_85 . CDS 47617 47675 . - 0 ID=Phyra83246;Parent=Phyra83246;rank=2 scaffold_85 . exon 47617 47675 . - . ID=Phyra83246.2;Parent=Phyra83246;constitutive=1;ensembl_phase=1;rank=2 scaffold_85 . CDS 47741 47804 . - 0 ID=Phyra83246;Parent=Phyra83246;rank=1 scaffold_85 . exon 47741 47804 . - . ID=Phyra83246.1;Parent=Phyra83246;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 ensembl protein_coding_gene 48239 50315 . - . ID=Phyra83247;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000019;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 48239 50315 . - . ID=Phyra83247;Parent=Phyra83247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 48239 50023 . - 0 ID=Phyra83247;Parent=Phyra83247;rank=2 scaffold_85 . exon 48239 50023 . - . ID=Phyra83247.2;Parent=Phyra83247;constitutive=1;rank=2 scaffold_85 . CDS 50094 50315 . - 0 ID=Phyra83247;Parent=Phyra83247;rank=1 scaffold_85 ensembl protein_coding_gene 57877 58755 . - . ID=Phyra72094;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_85000002;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 57877 58755 . - . ID=Phyra72094;Parent=Phyra72094;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 57877 58755 . - 0 ID=Phyra72094;Parent=Phyra72094;rank=1 scaffold_85 . exon 57877 58755 . - . ID=Phyra72094.1;Parent=Phyra72094;constitutive=1;rank=1 scaffold_85 . exon 50094 50315 . - . ID=Phyra83247.1;Parent=Phyra83247;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 51419 52597 . - . ID=Phyra83248;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000020;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 51419 52597 . - . ID=Phyra83248;Parent=Phyra83248;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 51419 52597 . - 0 ID=Phyra83248;Parent=Phyra83248;rank=1 scaffold_85 . exon 51419 52597 . - . ID=Phyra83248.1;Parent=Phyra83248;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 54488 55699 . - . ID=Phyra83249;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000021;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 54488 55699 . - . ID=Phyra83249;Parent=Phyra83249;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 54488 55699 . - 0 ID=Phyra83249;Parent=Phyra83249;rank=1 scaffold_85 . exon 54488 55699 . - . ID=Phyra83249.1;Parent=Phyra83249;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 56999 57660 . + . ID=Phyra83250;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000022;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 56999 57660 . + . ID=Phyra83250;Parent=Phyra83250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 56999 57272 . + 0 ID=Phyra83250;Parent=Phyra83250;rank=1 scaffold_85 . exon 56999 57272 . + . ID=Phyra83250.1;Parent=Phyra83250;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 . CDS 57339 57446 . + 0 ID=Phyra83250;Parent=Phyra83250;rank=2 scaffold_85 . exon 57339 57446 . + . ID=Phyra83250.2;Parent=Phyra83250;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_85 . CDS 57518 57660 . + 0 ID=Phyra83250;Parent=Phyra83250;rank=3 scaffold_85 . exon 57518 57660 . + . ID=Phyra83250.3;Parent=Phyra83250;constitutive=1;ensembl_phase=1;rank=3 scaffold_85 . biological_region 62050 62054 0.999 - . logic_name=eponine scaffold_85 . repeat_region 65124 65133 . ? . description=dust scaffold_85 . repeat_region 65351 65616 . ? . description=dust scaffold_85 . biological_region 66404 66408 0.999 + . logic_name=eponine scaffold_85 . repeat_region 66760 66809 . ? . description=dust scaffold_85 . repeat_region 66865 67344 . - . description=GypsyPi-1c_I-int scaffold_85 ensembl protein_coding_gene 63004 64008 . + . ID=Phyra72095;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_85000003;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 63004 64008 . + . ID=Phyra72095;Parent=Phyra72095;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 63004 64008 . + 0 ID=Phyra72095;Parent=Phyra72095;rank=1 scaffold_85 . exon 63004 64008 . + . ID=Phyra72095.1;Parent=Phyra72095;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 59642 60829 . + . ID=Phyra83252;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000024;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 59642 60829 . + . ID=Phyra83252;Parent=Phyra83252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 59642 60829 . + 0 ID=Phyra83252;Parent=Phyra83252;rank=1 scaffold_85 . exon 59642 60829 . + . ID=Phyra83252.1;Parent=Phyra83252;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 61007 62116 . + . ID=Phyra83253;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000025;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 61007 62116 . + . ID=Phyra83253;Parent=Phyra83253;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 61007 62116 . + 0 ID=Phyra83253;Parent=Phyra83253;rank=1 scaffold_85 . exon 61007 62116 . + . ID=Phyra83253.1;Parent=Phyra83253;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 67303 68325 . - . ID=Phyra83255;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000027;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 67303 68325 . - . ID=Phyra83255;Parent=Phyra83255;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 67303 68325 . - 0 ID=Phyra83255;Parent=Phyra83255;rank=1 scaffold_85 . exon 67303 68325 . - . ID=Phyra83255.1;Parent=Phyra83255;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 69761 71328 . + . ID=Phyra83256;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000028;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 69761 71328 . + . ID=Phyra83256;Parent=Phyra83256;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 69761 69838 . + 0 ID=Phyra83256;Parent=Phyra83256;rank=1 scaffold_85 . exon 69761 69838 . + . ID=Phyra83256.1;Parent=Phyra83256;constitutive=1;rank=1 scaffold_85 . CDS 70059 70979 . + 0 ID=Phyra83256;Parent=Phyra83256;rank=2 scaffold_85 . exon 70059 70979 . + . ID=Phyra83256.2;Parent=Phyra83256;constitutive=1;rank=2 scaffold_85 . CDS 71022 71231 . + 0 ID=Phyra83256;Parent=Phyra83256;rank=3 scaffold_85 . exon 71022 71231 . + . ID=Phyra83256.3;Parent=Phyra83256;constitutive=1;rank=3 scaffold_85 . CDS 71290 71328 . + 0 ID=Phyra83256;Parent=Phyra83256;rank=4 scaffold_85 . exon 71290 71328 . + . ID=Phyra83256.4;Parent=Phyra83256;constitutive=1;rank=4 scaffold_85 . repeat_region 79538 79551 . ? . description=dust scaffold_85 . repeat_region 80167 81647 . ? . description=dust scaffold_85 . biological_region 82157 82159 0.999 + . logic_name=eponine scaffold_85 . repeat_region 82922 82931 . ? . description=dust scaffold_85 . repeat_region 83481 84235 . ? . description=dust scaffold_85 . repeat_region 85388 85399 . ? . description=dust scaffold_85 . repeat_region 86614 86621 . ? . description=dust scaffold_85 . biological_region 87506 87510 0.999 - . logic_name=eponine scaffold_85 . repeat_region 87981 87993 . ? . description=dust scaffold_85 ensembl protein_coding_gene 88013 88577 . - . ID=Phyra83257;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000029;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 88013 88577 . - . ID=Phyra83257;Parent=Phyra83257;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 88013 88460 . - 0 ID=Phyra83257;Parent=Phyra83257;rank=2 scaffold_85 . exon 88013 88460 . - . ID=Phyra83257.2;Parent=Phyra83257;constitutive=1;ensembl_phase=2;rank=2 scaffold_85 . CDS 88573 88577 . - 0 ID=Phyra83257;Parent=Phyra83257;rank=1 scaffold_85 . exon 88573 88577 . - . ID=Phyra83257.1;Parent=Phyra83257;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 ensembl protein_coding_gene 88956 89960 . + . ID=Phyra83258;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000030;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 88956 89960 . + . ID=Phyra83258;Parent=Phyra83258;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 88956 89960 . + 0 ID=Phyra83258;Parent=Phyra83258;rank=1 scaffold_85 . exon 88956 89960 . + . ID=Phyra83258.1;Parent=Phyra83258;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 90044 91096 . - . ID=Phyra83259;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000031;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 90044 91096 . - . ID=Phyra83259;Parent=Phyra83259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 90044 91096 . - 0 ID=Phyra83259;Parent=Phyra83259;rank=1 scaffold_85 . exon 90044 91096 . - . ID=Phyra83259.1;Parent=Phyra83259;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 91330 93450 . + . ID=Phyra83260;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000032;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 91330 93450 . + . ID=Phyra83260;Parent=Phyra83260;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 91330 91524 . + 0 ID=Phyra83260;Parent=Phyra83260;rank=1 scaffold_85 . exon 91330 91524 . + . ID=Phyra83260.1;Parent=Phyra83260;constitutive=1;rank=1 scaffold_85 . CDS 91591 92159 . + 0 ID=Phyra83260;Parent=Phyra83260;rank=2 scaffold_85 . exon 91591 92159 . + . ID=Phyra83260.2;Parent=Phyra83260;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_85 . CDS 92211 92854 . + 0 ID=Phyra83260;Parent=Phyra83260;rank=3 scaffold_85 . exon 92211 92854 . + . ID=Phyra83260.3;Parent=Phyra83260;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_85 . CDS 92935 93209 . + 0 ID=Phyra83260;Parent=Phyra83260;rank=4 scaffold_85 . exon 92935 93209 . + . ID=Phyra83260.4;Parent=Phyra83260;constitutive=1;ensembl_phase=1;rank=4 scaffold_85 . CDS 93406 93450 . + 0 ID=Phyra83260;Parent=Phyra83260;rank=5 scaffold_85 . exon 93406 93450 . + . ID=Phyra83260.5;Parent=Phyra83260;constitutive=1;rank=5 scaffold_85 ensembl protein_coding_gene 93564 94475 . - . ID=Phyra83261;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000033;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 93564 94475 . - . ID=Phyra83261;Parent=Phyra83261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 93564 94475 . - 0 ID=Phyra83261;Parent=Phyra83261;rank=1 scaffold_85 . exon 93564 94475 . - . ID=Phyra83261.1;Parent=Phyra83261;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 96969 97925 . + . ID=Phyra83262;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000034;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 96969 97925 . + . ID=Phyra83262;Parent=Phyra83262;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 96969 97925 . + 0 ID=Phyra83262;Parent=Phyra83262;rank=1 scaffold_85 . exon 96969 97925 . + . ID=Phyra83262.1;Parent=Phyra83262;constitutive=1;rank=1 scaffold_85 . biological_region 104647 104649 0.999 + . logic_name=eponine scaffold_85 . biological_region 106597 106601 0.999 - . logic_name=eponine scaffold_85 . biological_region 106629 106632 0.999 + . logic_name=eponine scaffold_85 . biological_region 106652 106655 0.999 - . logic_name=eponine scaffold_85 . biological_region 106815 106817 0.999 - . logic_name=eponine scaffold_85 . biological_region 107085 107089 0.999 + . logic_name=eponine scaffold_85 . biological_region 107286 107288 0.999 + . logic_name=eponine scaffold_85 ensembl protein_coding_gene 105161 107800 . - . ID=Phyra83264;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000036;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 105161 107800 . - . ID=Phyra83264;Parent=Phyra83264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 105161 107800 . - 0 ID=Phyra83264;Parent=Phyra83264;rank=1 scaffold_85 . exon 105161 107800 . - . ID=Phyra83264.1;Parent=Phyra83264;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 98540 100287 . + . ID=Phyra96560;biotype=protein_coding;external_name=C_scaffold_85000004;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 98540 100287 . + . ID=Phyra96560;Parent=Phyra96560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 98540 99331 . + 0 ID=Phyra96560;Parent=Phyra96560;rank=1 scaffold_85 . exon 98540 99331 . + . ID=Phyra96560.1;Parent=Phyra96560;constitutive=1;rank=1 scaffold_85 . CDS 99488 99775 . + 0 ID=Phyra96560;Parent=Phyra96560;rank=2 scaffold_85 . exon 99488 99775 . + . ID=Phyra96560.2;Parent=Phyra96560;constitutive=1;rank=2 scaffold_85 . CDS 99809 99980 . + 0 ID=Phyra96560;Parent=Phyra96560;rank=3 scaffold_85 . exon 99809 99980 . + . ID=Phyra96560.3;Parent=Phyra96560;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_85 . CDS 100074 100133 . + 0 ID=Phyra96560;Parent=Phyra96560;rank=4 scaffold_85 . exon 100074 100133 . + . ID=Phyra96560.4;Parent=Phyra96560;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_85 . CDS 100268 100287 . + 0 ID=Phyra96560;Parent=Phyra96560;rank=5 scaffold_85 . exon 100268 100287 . + . ID=Phyra96560.5;Parent=Phyra96560;constitutive=1;ensembl_phase=1;rank=5 scaffold_85 ensembl protein_coding_gene 101710 101823 . - . ID=Phyra96561;biotype=protein_coding;external_name=C_scaffold_85000005;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 101710 101823 . - . ID=Phyra96561;Parent=Phyra96561;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 101710 101823 . - 0 ID=Phyra96561;Parent=Phyra96561;rank=1 scaffold_85 . exon 101710 101823 . - . ID=Phyra96561.1;Parent=Phyra96561;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 116109 117221 . - . ID=Phyra72096;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_85000004;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 116109 117221 . - . ID=Phyra72096;Parent=Phyra72096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 116109 117221 . - 0 ID=Phyra72096;Parent=Phyra72096;rank=1 scaffold_85 . exon 116109 117221 . - . ID=Phyra72096.1;Parent=Phyra72096;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 113942 115696 . + . ID=Phyra83266;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000038;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 113942 115696 . + . ID=Phyra83266;Parent=Phyra83266;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 113942 115696 . + 0 ID=Phyra83266;Parent=Phyra83266;rank=1 scaffold_85 . exon 113942 115696 . + . ID=Phyra83266.1;Parent=Phyra83266;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 108238 109619 . + . ID=Phyra96563;biotype=protein_coding;external_name=C_scaffold_85000007;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 108238 109619 . + . ID=Phyra96563;Parent=Phyra96563;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 108238 108600 . + 0 ID=Phyra96563;Parent=Phyra96563;rank=1 scaffold_85 . exon 108238 108600 . + . ID=Phyra96563.1;Parent=Phyra96563;constitutive=1;rank=1 scaffold_85 . CDS 108653 108823 . + 0 ID=Phyra96563;Parent=Phyra96563;rank=2 scaffold_85 . exon 108653 108823 . + . ID=Phyra96563.2;Parent=Phyra96563;constitutive=1;rank=2 scaffold_85 . CDS 108890 108985 . + 0 ID=Phyra96563;Parent=Phyra96563;rank=3 scaffold_85 . exon 108890 108985 . + . ID=Phyra96563.3;Parent=Phyra96563;constitutive=1;rank=3 scaffold_85 . CDS 109045 109139 . + 0 ID=Phyra96563;Parent=Phyra96563;rank=4 scaffold_85 . exon 109045 109139 . + . ID=Phyra96563.4;Parent=Phyra96563;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_85 . CDS 109353 109458 . + 0 ID=Phyra96563;Parent=Phyra96563;rank=5 scaffold_85 . exon 109353 109458 . + . ID=Phyra96563.5;Parent=Phyra96563;constitutive=1;ensembl_phase=2;rank=5 scaffold_85 . CDS 109524 109619 . + 0 ID=Phyra96563;Parent=Phyra96563;rank=6 scaffold_85 . exon 109524 109619 . + . ID=Phyra96563.6;Parent=Phyra96563;constitutive=1;rank=6 scaffold_85 ensembl protein_coding_gene 110200 113131 . - . ID=Phyra96564;biotype=protein_coding;external_name=C_scaffold_85000008;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 110200 113131 . - . ID=Phyra96564;Parent=Phyra96564;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 110200 110544 . - 0 ID=Phyra96564;Parent=Phyra96564;rank=8 scaffold_85 . exon 110200 110544 . - . ID=Phyra96564.8;Parent=Phyra96564;constitutive=1;rank=8 scaffold_85 . CDS 110620 110835 . - 0 ID=Phyra96564;Parent=Phyra96564;rank=7 scaffold_85 . exon 110620 110835 . - . ID=Phyra96564.7;Parent=Phyra96564;constitutive=1;rank=7 scaffold_85 . CDS 110904 111218 . - 0 ID=Phyra96564;Parent=Phyra96564;rank=6 scaffold_85 . exon 110904 111218 . - . ID=Phyra96564.6;Parent=Phyra96564;constitutive=1;rank=6 scaffold_85 . CDS 111598 111694 . - 0 ID=Phyra96564;Parent=Phyra96564;rank=5 scaffold_85 . exon 111598 111694 . - . ID=Phyra96564.5;Parent=Phyra96564;constitutive=1;ensembl_phase=2;rank=5 scaffold_85 . CDS 111841 112187 . - 0 ID=Phyra96564;Parent=Phyra96564;rank=4 scaffold_85 . exon 111841 112187 . - . ID=Phyra96564.4;Parent=Phyra96564;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_85 . CDS 112267 112566 . - 0 ID=Phyra96564;Parent=Phyra96564;rank=3 scaffold_85 . exon 112267 112566 . - . ID=Phyra96564.3;Parent=Phyra96564;constitutive=1;rank=3 scaffold_85 . CDS 112631 112749 . - 0 ID=Phyra96564;Parent=Phyra96564;rank=2 scaffold_85 . exon 112631 112749 . - . ID=Phyra96564.2;Parent=Phyra96564;constitutive=1;ensembl_phase=1;rank=2 scaffold_85 . CDS 112831 113131 . - 0 ID=Phyra96564;Parent=Phyra96564;rank=1 scaffold_85 . exon 112831 113131 . - . ID=Phyra96564.1;Parent=Phyra96564;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 . biological_region 126494 126500 0.999 + . logic_name=eponine scaffold_85 ensembl protein_coding_gene 117915 124646 . + . ID=Phyra83268;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000040;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 117915 124646 . + . ID=Phyra83268;Parent=Phyra83268;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 117915 117994 . + 0 ID=Phyra83268;Parent=Phyra83268;rank=1 scaffold_85 . exon 117915 117994 . + . ID=Phyra83268.1;Parent=Phyra83268;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 . CDS 118059 118112 . + 0 ID=Phyra83268;Parent=Phyra83268;rank=2 scaffold_85 . exon 118059 118112 . + . ID=Phyra83268.2;Parent=Phyra83268;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_85 . CDS 118191 118221 . + 0 ID=Phyra83268;Parent=Phyra83268;rank=3 scaffold_85 . exon 118191 118221 . + . ID=Phyra83268.3;Parent=Phyra83268;constitutive=1;ensembl_phase=2;rank=3 scaffold_85 . CDS 118289 118563 . + 0 ID=Phyra83268;Parent=Phyra83268;rank=4 scaffold_85 . exon 118289 118563 . + . ID=Phyra83268.4;Parent=Phyra83268;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_85 . CDS 118622 118685 . + 0 ID=Phyra83268;Parent=Phyra83268;rank=5 scaffold_85 . exon 118622 118685 . + . ID=Phyra83268.5;Parent=Phyra83268;constitutive=1;ensembl_phase=2;rank=5 scaffold_85 . CDS 118763 118931 . + 0 ID=Phyra83268;Parent=Phyra83268;rank=6 scaffold_85 . exon 118763 118931 . + . ID=Phyra83268.6;Parent=Phyra83268;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_85 . CDS 119004 123260 . + 0 ID=Phyra83268;Parent=Phyra83268;rank=7 scaffold_85 . exon 119004 123260 . + . ID=Phyra83268.7;Parent=Phyra83268;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_85 . CDS 123479 123978 . + 0 ID=Phyra83268;Parent=Phyra83268;rank=8 scaffold_85 . exon 123479 123978 . + . ID=Phyra83268.8;Parent=Phyra83268;constitutive=1;ensembl_phase=1;rank=8 scaffold_85 . CDS 124041 124646 . + 0 ID=Phyra83268;Parent=Phyra83268;rank=9 scaffold_85 . exon 124041 124646 . + . ID=Phyra83268.9;Parent=Phyra83268;constitutive=1;rank=9 scaffold_85 . repeat_region 130804 130830 . ? . description=trf scaffold_85 . repeat_region 130804 130837 . ? . description=trf scaffold_85 . repeat_region 133040 133089 . ? . description=dust scaffold_85 ensembl protein_coding_gene 130153 131718 . + . ID=Phyra83269;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000041;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 130153 131718 . + . ID=Phyra83269;Parent=Phyra83269;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 130153 130392 . + 0 ID=Phyra83269;Parent=Phyra83269;rank=1 scaffold_85 . exon 130153 130392 . + . ID=Phyra83269.1;Parent=Phyra83269;constitutive=1;rank=1 scaffold_85 . CDS 130483 130699 . + 0 ID=Phyra83269;Parent=Phyra83269;rank=2 scaffold_85 . exon 130483 130699 . + . ID=Phyra83269.2;Parent=Phyra83269;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_85 . CDS 130772 131718 . + 0 ID=Phyra83269;Parent=Phyra83269;rank=3 scaffold_85 . exon 130772 131718 . + . ID=Phyra83269.3;Parent=Phyra83269;constitutive=1;ensembl_phase=1;rank=3 scaffold_85 ensembl protein_coding_gene 135797 137323 . - . ID=Phyra83272;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000044;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 135797 137323 . - . ID=Phyra83272;Parent=Phyra83272;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 135797 137323 . - 0 ID=Phyra83272;Parent=Phyra83272;rank=1 scaffold_85 . exon 135797 137323 . - . ID=Phyra83272.1;Parent=Phyra83272;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 132022 133483 . - . ID=Phyra96565;biotype=protein_coding;external_name=C_scaffold_85000009;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 132022 133483 . - . ID=Phyra96565;Parent=Phyra96565;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 132022 132242 . - 0 ID=Phyra96565;Parent=Phyra96565;rank=3 scaffold_85 . exon 132022 132242 . - . ID=Phyra96565.3;Parent=Phyra96565;constitutive=1;ensembl_phase=1;rank=3 scaffold_85 . CDS 133246 133321 . - 0 ID=Phyra96565;Parent=Phyra96565;rank=2 scaffold_85 . exon 133246 133321 . - . ID=Phyra96565.2;Parent=Phyra96565;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_85 . CDS 133388 133483 . - 0 ID=Phyra96565;Parent=Phyra96565;rank=1 scaffold_85 . exon 133388 133483 . - . ID=Phyra96565.1;Parent=Phyra96565;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 133718 134134 . - . ID=Phyra96566;biotype=protein_coding;description=Elicitin-like protein RAL11D [Source:UniProtKB/TrEMBL%3BAcc:Q2N0D2];external_name=C_scaffold_85000010;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 133718 134134 . - . ID=Phyra96566;Parent=Phyra96566;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 133718 134134 . - 0 ID=Phyra96566;Parent=Phyra96566;rank=1 scaffold_85 . exon 133718 134134 . - . ID=Phyra96566.1;Parent=Phyra96566;constitutive=1;rank=1 scaffold_85 . biological_region 139176 139177 0.999 - . logic_name=eponine scaffold_85 . biological_region 140919 140922 0.999 - . logic_name=eponine scaffold_85 . biological_region 142473 142475 0.999 + . logic_name=eponine scaffold_85 ensembl protein_coding_gene 138461 140296 . - . ID=Phyra83273;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000045;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 138461 140296 . - . ID=Phyra83273;Parent=Phyra83273;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 138461 140296 . - 0 ID=Phyra83273;Parent=Phyra83273;rank=1 scaffold_85 . exon 138461 140296 . - . ID=Phyra83273.1;Parent=Phyra83273;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 141944 142915 . - . ID=Phyra83274;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000046;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 141944 142915 . - . ID=Phyra83274;Parent=Phyra83274;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 141944 142915 . - 0 ID=Phyra83274;Parent=Phyra83274;rank=1 scaffold_85 . exon 141944 142915 . - . ID=Phyra83274.1;Parent=Phyra83274;constitutive=1;rank=1 scaffold_85 . repeat_region 147508 147557 . ? . description=dust scaffold_85 . repeat_region 147917 147973 . ? . description=dust scaffold_85 . repeat_region 148485 148724 . - . description=GypsyPi-1c_I-int scaffold_85 . repeat_region 148844 149120 . ? . description=dust scaffold_85 . repeat_region 150049 150098 . ? . description=dust scaffold_85 . repeat_region 151587 151594 . ? . description=dust scaffold_85 . repeat_region 153316 153323 . ? . description=dust scaffold_85 . repeat_region 153924 153942 . ? . description=dust scaffold_85 . repeat_region 153925 153995 . ? . description=trf scaffold_85 . repeat_region 155036 155181 . + . description=GypsyPi-1c_LTR scaffold_85 ensembl protein_coding_gene 149122 150018 . + . ID=Phyra83275;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000047;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 149122 150018 . + . ID=Phyra83275;Parent=Phyra83275;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 149122 150018 . + 0 ID=Phyra83275;Parent=Phyra83275;rank=1 scaffold_85 . exon 149122 150018 . + . ID=Phyra83275.1;Parent=Phyra83275;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 156347 157250 . + . ID=Phyra83276;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000048;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 156347 157250 . + . ID=Phyra83276;Parent=Phyra83276;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 156347 156439 . + 0 ID=Phyra83276;Parent=Phyra83276;rank=1 scaffold_85 . exon 156347 156439 . + . ID=Phyra83276.1;Parent=Phyra83276;constitutive=1;rank=1 scaffold_85 . CDS 156511 156574 . + 0 ID=Phyra83276;Parent=Phyra83276;rank=2 scaffold_85 . exon 156511 156574 . + . ID=Phyra83276.2;Parent=Phyra83276;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_85 . CDS 156895 157250 . + 0 ID=Phyra83276;Parent=Phyra83276;rank=3 scaffold_85 . exon 156895 157250 . + . ID=Phyra83276.3;Parent=Phyra83276;constitutive=1;ensembl_phase=1;rank=3 scaffold_85 . repeat_region 159760 159935 . + . description=(CCCCAG)n scaffold_85 . biological_region 160258 160260 0.999 + . logic_name=eponine scaffold_85 . biological_region 160283 160286 0.999 + . logic_name=eponine scaffold_85 . biological_region 161344 161349 0.999 + . logic_name=eponine scaffold_85 . biological_region 162012 162013 0.999 - . logic_name=eponine scaffold_85 . biological_region 163090 163095 0.999 - . logic_name=eponine scaffold_85 . biological_region 165735 165739 0.999 + . logic_name=eponine scaffold_85 . biological_region 166164 166165 0.999 + . logic_name=eponine scaffold_85 . biological_region 166193 166194 0.999 - . logic_name=eponine scaffold_85 . biological_region 166432 166436 0.999 + . logic_name=eponine scaffold_85 . biological_region 166471 166476 0.999 + . logic_name=eponine scaffold_85 . biological_region 166510 166512 0.999 + . logic_name=eponine scaffold_85 . biological_region 166572 166572 0.999 + . logic_name=eponine scaffold_85 . biological_region 166617 166620 0.999 - . logic_name=eponine scaffold_85 ensembl protein_coding_gene 159486 159734 . + . ID=Phyra53875;biotype=protein_coding;external_name=gwEuk.85.27.1;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 159486 159734 . + . ID=Phyra53875;Parent=Phyra53875;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 159486 159734 . + 0 ID=Phyra53875;Parent=Phyra53875;rank=1 scaffold_85 . exon 159486 159734 . + . ID=Phyra53875.1;Parent=Phyra53875;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 160626 161537 . - . ID=Phyra83278;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000050;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 160626 161537 . - . ID=Phyra83278;Parent=Phyra83278;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 160626 160691 . - 0 ID=Phyra83278;Parent=Phyra83278;rank=3 scaffold_85 . exon 160626 160691 . - . ID=Phyra83278.3;Parent=Phyra83278;constitutive=1;rank=3 scaffold_85 . CDS 160750 161045 . - 0 ID=Phyra83278;Parent=Phyra83278;rank=2 scaffold_85 . exon 160750 161045 . - . ID=Phyra83278.2;Parent=Phyra83278;constitutive=1;ensembl_phase=1;rank=2 scaffold_85 . CDS 161081 161537 . - 0 ID=Phyra83278;Parent=Phyra83278;rank=1 scaffold_85 . exon 161081 161537 . - . ID=Phyra83278.1;Parent=Phyra83278;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 ensembl protein_coding_gene 162444 163178 . - . ID=Phyra83279;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000051;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 162444 163178 . - . ID=Phyra83279;Parent=Phyra83279;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 162444 163178 . - 0 ID=Phyra83279;Parent=Phyra83279;rank=1 scaffold_85 . exon 162444 163178 . - . ID=Phyra83279.1;Parent=Phyra83279;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 166400 166944 . - . ID=Phyra83280;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000052;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 166400 166944 . - . ID=Phyra83280;Parent=Phyra83280;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 166400 166849 . - 0 ID=Phyra83280;Parent=Phyra83280;rank=2 scaffold_85 . exon 166400 166849 . - . ID=Phyra83280.2;Parent=Phyra83280;constitutive=1;rank=2 scaffold_85 . CDS 166906 166944 . - 0 ID=Phyra83280;Parent=Phyra83280;rank=1 scaffold_85 . exon 166906 166944 . - . ID=Phyra83280.1;Parent=Phyra83280;constitutive=1;rank=1 scaffold_85 . repeat_region 168928 168948 . ? . description=trf scaffold_85 . repeat_region 168928 168948 . ? . description=dust scaffold_85 . repeat_region 169275 169306 . ? . description=trf scaffold_85 ensembl protein_coding_gene 168153 168518 . + . ID=Phyra96571;biotype=protein_coding;external_name=C_scaffold_85000015;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 168153 168518 . + . ID=Phyra96571;Parent=Phyra96571;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 168153 168186 . + 0 ID=Phyra96571;Parent=Phyra96571;rank=1 scaffold_85 . exon 168153 168186 . + . ID=Phyra96571.1;Parent=Phyra96571;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 . CDS 168328 168518 . + 0 ID=Phyra96571;Parent=Phyra96571;rank=2 scaffold_85 . exon 168328 168518 . + . ID=Phyra96571.2;Parent=Phyra96571;constitutive=1;ensembl_phase=1;rank=2 scaffold_85 ensembl protein_coding_gene 172373 186454 . - . ID=Phyra96572;biotype=protein_coding;external_name=C_scaffold_85000016;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 172373 186454 . - . ID=Phyra96572;Parent=Phyra96572;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 172373 172401 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=33 scaffold_85 . exon 172373 172401 . - . ID=Phyra96572.33;Parent=Phyra96572;constitutive=1;ensembl_phase=1;rank=33 scaffold_85 . CDS 172469 172719 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=32 scaffold_85 . exon 172469 172719 . - . ID=Phyra96572.32;Parent=Phyra96572;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=32 scaffold_85 . CDS 172963 173153 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=31 scaffold_85 . exon 172963 173153 . - . ID=Phyra96572.31;Parent=Phyra96572;constitutive=1;ensembl_end_phase=2;rank=31 scaffold_85 . CDS 173424 174637 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=30 scaffold_85 . exon 173424 174637 . - . ID=Phyra96572.30;Parent=Phyra96572;constitutive=1;ensembl_phase=1;rank=30 scaffold_85 . CDS 174773 175558 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=29 scaffold_85 . exon 174773 175558 . - . ID=Phyra96572.29;Parent=Phyra96572;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=29 scaffold_85 . CDS 176391 176744 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=28 scaffold_85 . exon 176391 176744 . - . ID=Phyra96572.28;Parent=Phyra96572;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=28 scaffold_85 . CDS 176772 176894 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=27 scaffold_85 . exon 176772 176894 . - . ID=Phyra96572.27;Parent=Phyra96572;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=27 scaffold_85 . CDS 176985 177219 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=26 scaffold_85 . CDS 177274 177492 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=25 scaffold_85 . CDS 177532 177630 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=24 scaffold_85 . CDS 177838 178185 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=23 scaffold_85 . CDS 178342 178428 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=22 scaffold_85 . CDS 179044 179193 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=21 scaffold_85 . CDS 179533 180318 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=20 scaffold_85 . CDS 180609 180818 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=19 scaffold_85 . CDS 180881 181051 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=18 scaffold_85 . CDS 181121 181690 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=17 scaffold_85 . CDS 181721 182089 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=16 scaffold_85 . CDS 182154 182402 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=15 scaffold_85 . CDS 182471 182698 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=14 scaffold_85 . CDS 182759 183007 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=13 scaffold_85 . CDS 183071 183339 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=12 scaffold_85 . CDS 183730 183944 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=11 scaffold_85 . CDS 183969 184072 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=10 scaffold_85 . CDS 184229 184489 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=9 scaffold_85 . CDS 184697 184768 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=8 scaffold_85 . CDS 184838 184974 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=7 scaffold_85 . CDS 185005 185060 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=6 scaffold_85 . CDS 185126 185316 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=5 scaffold_85 . CDS 185378 185499 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=4 scaffold_85 . CDS 185568 185741 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=3 scaffold_85 . CDS 186062 186127 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=2 scaffold_85 . CDS 186358 186454 . - 0 ID=Phyra96572;Parent=Phyra96572;rank=1 scaffold_85 . biological_region 177652 177656 0.999 + . logic_name=eponine scaffold_85 ensembl protein_coding_gene 186566 188620 . - . ID=Phyra83282;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_85000054;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 186566 188620 . - . ID=Phyra83282;Parent=Phyra83282;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 186566 186965 . - 0 ID=Phyra83282;Parent=Phyra83282;rank=5 scaffold_85 . exon 186566 186965 . - . ID=Phyra83282.5;Parent=Phyra83282;constitutive=1;ensembl_phase=2;rank=5 scaffold_85 . CDS 187045 187236 . - 0 ID=Phyra83282;Parent=Phyra83282;rank=4 scaffold_85 . CDS 187310 187571 . - 0 ID=Phyra83282;Parent=Phyra83282;rank=3 scaffold_85 . CDS 187643 187695 . - 0 ID=Phyra83282;Parent=Phyra83282;rank=2 scaffold_85 . CDS 187824 188620 . - 0 ID=Phyra83282;Parent=Phyra83282;rank=1 scaffold_85 . exon 176985 177219 . - . ID=Phyra96572.26;Parent=Phyra96572;constitutive=1;ensembl_end_phase=1;rank=26 scaffold_85 . exon 177274 177492 . - . ID=Phyra96572.25;Parent=Phyra96572;constitutive=1;rank=25 scaffold_85 . exon 177532 177630 . - . ID=Phyra96572.24;Parent=Phyra96572;constitutive=1;rank=24 scaffold_85 . exon 177838 178185 . - . ID=Phyra96572.23;Parent=Phyra96572;constitutive=1;rank=23 scaffold_85 . exon 178342 178428 . - . ID=Phyra96572.22;Parent=Phyra96572;constitutive=1;rank=22 scaffold_85 . exon 179044 179193 . - . ID=Phyra96572.21;Parent=Phyra96572;constitutive=1;rank=21 scaffold_85 . exon 179533 180318 . - . ID=Phyra96572.20;Parent=Phyra96572;constitutive=1;rank=20 scaffold_85 . exon 180609 180818 . - . ID=Phyra96572.19;Parent=Phyra96572;constitutive=1;rank=19 scaffold_85 . exon 180881 181051 . - . ID=Phyra96572.18;Parent=Phyra96572;constitutive=1;rank=18 scaffold_85 . exon 181121 181690 . - . ID=Phyra96572.17;Parent=Phyra96572;constitutive=1;rank=17 scaffold_85 . exon 181721 182089 . - . ID=Phyra96572.16;Parent=Phyra96572;constitutive=1;rank=16 scaffold_85 . exon 182154 182402 . - . ID=Phyra96572.15;Parent=Phyra96572;constitutive=1;rank=15 scaffold_85 . exon 182471 182698 . - . ID=Phyra96572.14;Parent=Phyra96572;constitutive=1;rank=14 scaffold_85 . exon 182759 183007 . - . ID=Phyra96572.13;Parent=Phyra96572;constitutive=1;rank=13 scaffold_85 . exon 183071 183339 . - . ID=Phyra96572.12;Parent=Phyra96572;constitutive=1;ensembl_phase=1;rank=12 scaffold_85 . exon 183730 183944 . - . ID=Phyra96572.11;Parent=Phyra96572;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_85 . exon 183969 184072 . - . ID=Phyra96572.10;Parent=Phyra96572;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_85 . exon 184229 184489 . - . ID=Phyra96572.9;Parent=Phyra96572;constitutive=1;rank=9 scaffold_85 . exon 184697 184768 . - . ID=Phyra96572.8;Parent=Phyra96572;constitutive=1;rank=8 scaffold_85 . exon 184838 184974 . - . ID=Phyra96572.7;Parent=Phyra96572;constitutive=1;ensembl_phase=1;rank=7 scaffold_85 . exon 185005 185060 . - . ID=Phyra96572.6;Parent=Phyra96572;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_85 . exon 185126 185316 . - . ID=Phyra96572.5;Parent=Phyra96572;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_85 . exon 185378 185499 . - . ID=Phyra96572.4;Parent=Phyra96572;constitutive=1;ensembl_phase=1;rank=4 scaffold_85 . exon 185568 185741 . - . ID=Phyra96572.3;Parent=Phyra96572;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_85 . exon 186062 186127 . - . ID=Phyra96572.2;Parent=Phyra96572;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_85 . exon 186358 186454 . - . ID=Phyra96572.1;Parent=Phyra96572;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 . repeat_region 191423 204483 . ? . description=dust scaffold_85 . exon 187045 187236 . - . ID=Phyra83282.4;Parent=Phyra83282;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_85 . exon 187310 187571 . - . ID=Phyra83282.3;Parent=Phyra83282;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_85 . exon 187643 187695 . - . ID=Phyra83282.2;Parent=Phyra83282;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_85 . exon 187824 188620 . - . ID=Phyra83282.1;Parent=Phyra83282;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 ensembl protein_coding_gene 189198 191402 . - . ID=Phyra96575;biotype=protein_coding;external_name=C_scaffold_85000019;logic_name=jgi_phyra1 scaffold_85 ensembl transcript 189198 191402 . - . ID=Phyra96575;Parent=Phyra96575;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_85 . CDS 189198 189822 . - 0 ID=Phyra96575;Parent=Phyra96575;rank=3 scaffold_85 . exon 189198 189822 . - . ID=Phyra96575.3;Parent=Phyra96575;constitutive=1;ensembl_phase=2;rank=3 scaffold_85 . CDS 189886 191039 . - 0 ID=Phyra96575;Parent=Phyra96575;rank=2 scaffold_85 . exon 189886 191039 . - . ID=Phyra96575.2;Parent=Phyra96575;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_85 . CDS 191229 191402 . - 0 ID=Phyra96575;Parent=Phyra96575;rank=1 scaffold_85 . exon 191229 191402 . - . ID=Phyra96575.1;Parent=Phyra96575;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_84 1 208823 scaffold_84 . biological_region 382 386 0.999 + . logic_name=eponine scaffold_84 . biological_region 433 438 0.999 + . logic_name=eponine scaffold_84 . biological_region 462 462 0.999 - . logic_name=eponine scaffold_84 . biological_region 499 500 0.999 - . logic_name=eponine scaffold_84 . biological_region 536 540 0.999 + . logic_name=eponine scaffold_84 . biological_region 973 976 0.999 - . logic_name=eponine scaffold_84 . repeat_region 1071 2405 . + . description=GypsyPi-1c_I-int scaffold_84 . biological_region 1235 1236 0.999 + . logic_name=eponine scaffold_84 . repeat_region 3297 3353 . ? . description=dust scaffold_84 . repeat_region 3367 3701 . + . description=GypsyPi-1c_I-int scaffold_84 . repeat_region 3719 4074 . ? . description=dust scaffold_84 . repeat_region 4075 4211 . + . description=GypsyPi-1c_I-int scaffold_84 . biological_region 5162 5163 0.999 + . logic_name=eponine scaffold_84 . biological_region 8874 8878 0.999 - . logic_name=eponine scaffold_84 . biological_region 9092 9095 0.999 - . logic_name=eponine scaffold_84 . repeat_region 9097 9182 . ? . description=trf scaffold_84 ensembl pseudogenic_tRNA 2959 3031 . - . ID=EPrPRAG00000000189;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_84 ensembl transcript 2959 3031 . - . ID=EPrPRAT00000000189;Parent=EPrPRAG00000000189;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_84 . exon 2959 3031 . - . ID=EPrPRAE00000000189;Parent=EPrPRAT00000000189;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 ensembl protein_coding_gene 426 1933 . + . ID=Phyra83175;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000001;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 426 1933 . + . ID=Phyra83175;Parent=Phyra83175;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 426 1140 . + 0 ID=Phyra83175;Parent=Phyra83175;rank=1 scaffold_84 . exon 426 1140 . + . ID=Phyra83175.1;Parent=Phyra83175;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 . CDS 1188 1933 . + 0 ID=Phyra83175;Parent=Phyra83175;rank=2 scaffold_84 . exon 1188 1933 . + . ID=Phyra83175.2;Parent=Phyra83175;constitutive=1;ensembl_phase=1;rank=2 scaffold_84 ensembl protein_coding_gene 4228 5732 . - . ID=Phyra83176;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000002;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 4228 5732 . - . ID=Phyra83176;Parent=Phyra83176;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 4228 4394 . - 0 ID=Phyra83176;Parent=Phyra83176;rank=5 scaffold_84 . exon 4228 4394 . - . ID=Phyra83176.5;Parent=Phyra83176;constitutive=1;ensembl_phase=1;rank=5 scaffold_84 . CDS 4649 4846 . - 0 ID=Phyra83176;Parent=Phyra83176;rank=4 scaffold_84 . exon 4649 4846 . - . ID=Phyra83176.4;Parent=Phyra83176;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_84 . CDS 4871 4912 . - 0 ID=Phyra83176;Parent=Phyra83176;rank=3 scaffold_84 . exon 4871 4912 . - . ID=Phyra83176.3;Parent=Phyra83176;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_84 . CDS 5049 5603 . - 0 ID=Phyra83176;Parent=Phyra83176;rank=2 scaffold_84 . exon 5049 5603 . - . ID=Phyra83176.2;Parent=Phyra83176;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_84 . CDS 5651 5732 . - 0 ID=Phyra83176;Parent=Phyra83176;rank=1 scaffold_84 . exon 5651 5732 . - . ID=Phyra83176.1;Parent=Phyra83176;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 ensembl pseudogene 10041 23046 . - . ID=Phyra53784;biotype=pseudogene;external_name=gwEuk.84.7.1;logic_name=jgi_phyra1 scaffold_84 ensembl pseudogene 10041 23046 . - . ID=Phyra53784;Parent=Phyra53784;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_84 . exon 10041 10775 . - . ID=Phyra53784.7;Parent=Phyra53784;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_84 . exon 10881 11305 . - . ID=Phyra53784.6;Parent=Phyra53784;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_84 . exon 16549 16789 . - . ID=Phyra53784.5;Parent=Phyra53784;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_84 . exon 17422 17505 . - . ID=Phyra53784.4;Parent=Phyra53784;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_84 . exon 17830 18589 . - . ID=Phyra53784.3;Parent=Phyra53784;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_84 . exon 18660 19341 . - . ID=Phyra53784.2;Parent=Phyra53784;constitutive=1;ensembl_phase=2;rank=2 scaffold_84 . repeat_region 21470 21519 . ? . description=dust scaffold_84 . biological_region 23580 23582 0.999 + . logic_name=eponine scaffold_84 . repeat_region 24736 24743 . ? . description=dust scaffold_84 . biological_region 25170 25174 0.999 + . logic_name=eponine scaffold_84 . repeat_region 25666 25683 . ? . description=dust scaffold_84 . repeat_region 25999 26023 . ? . description=trf scaffold_84 . biological_region 27206 27210 0.999 + . logic_name=eponine scaffold_84 . biological_region 27234 27240 0.999 + . logic_name=eponine scaffold_84 . biological_region 27383 27385 0.999 + . logic_name=eponine scaffold_84 . repeat_region 27833 27919 . ? . description=trf scaffold_84 . repeat_region 27865 27950 . ? . description=trf scaffold_84 . repeat_region 28571 28606 . ? . description=trf scaffold_84 . repeat_region 28571 28606 . ? . description=trf scaffold_84 . repeat_region 29761 29769 . ? . description=dust scaffold_84 . exon 22754 23046 . - . ID=Phyra53784.1;Parent=Phyra53784;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 ensembl protein_coding_gene 31852 32788 . - . ID=Phyra83181;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000007;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 31852 32788 . - . ID=Phyra83181;Parent=Phyra83181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 31852 32193 . - 0 ID=Phyra83181;Parent=Phyra83181;rank=4 scaffold_84 . exon 31852 32193 . - . ID=Phyra83181.4;Parent=Phyra83181;constitutive=1;rank=4 scaffold_84 . CDS 32297 32556 . - 0 ID=Phyra83181;Parent=Phyra83181;rank=3 scaffold_84 . exon 32297 32556 . - . ID=Phyra83181.3;Parent=Phyra83181;constitutive=1;ensembl_phase=1;rank=3 scaffold_84 . CDS 32592 32656 . - 0 ID=Phyra83181;Parent=Phyra83181;rank=2 scaffold_84 . exon 32592 32656 . - . ID=Phyra83181.2;Parent=Phyra83181;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_84 . CDS 32733 32788 . - 0 ID=Phyra83181;Parent=Phyra83181;rank=1 scaffold_84 . exon 32733 32788 . - . ID=Phyra83181.1;Parent=Phyra83181;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 ensembl protein_coding_gene 36403 37342 . - . ID=Phyra83182;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000008;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 36403 37342 . - . ID=Phyra83182;Parent=Phyra83182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 36403 36744 . - 0 ID=Phyra83182;Parent=Phyra83182;rank=4 scaffold_84 . exon 36403 36744 . - . ID=Phyra83182.4;Parent=Phyra83182;constitutive=1;rank=4 scaffold_84 . CDS 36848 37107 . - 0 ID=Phyra83182;Parent=Phyra83182;rank=3 scaffold_84 . exon 36848 37107 . - . ID=Phyra83182.3;Parent=Phyra83182;constitutive=1;ensembl_phase=1;rank=3 scaffold_84 . CDS 37143 37207 . - 0 ID=Phyra83182;Parent=Phyra83182;rank=2 scaffold_84 . exon 37143 37207 . - . ID=Phyra83182.2;Parent=Phyra83182;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_84 . CDS 37284 37342 . - 0 ID=Phyra83182;Parent=Phyra83182;rank=1 scaffold_84 . exon 37284 37342 . - . ID=Phyra83182.1;Parent=Phyra83182;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 . biological_region 40086 40087 0.999 - . logic_name=eponine scaffold_84 . biological_region 43750 43751 0.999 - . logic_name=eponine scaffold_84 . biological_region 43804 43808 0.999 - . logic_name=eponine scaffold_84 . biological_region 45725 45725 0.999 - . logic_name=eponine scaffold_84 ensembl protein_coding_gene 43869 45617 . + . ID=Phyra83183;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000009;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 43869 45617 . + . ID=Phyra83183;Parent=Phyra83183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 43869 45617 . + 0 ID=Phyra83183;Parent=Phyra83183;rank=1 scaffold_84 . exon 43869 45617 . + . ID=Phyra83183.1;Parent=Phyra83183;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 46044 47713 . - . ID=Phyra96534;biotype=protein_coding;external_name=C_scaffold_84000001;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 46044 47713 . - . ID=Phyra96534;Parent=Phyra96534;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 46044 46930 . - 0 ID=Phyra96534;Parent=Phyra96534;rank=3 scaffold_84 . exon 46044 46930 . - . ID=Phyra96534.3;Parent=Phyra96534;constitutive=1;ensembl_phase=1;rank=3 scaffold_84 . CDS 47013 47125 . - 0 ID=Phyra96534;Parent=Phyra96534;rank=2 scaffold_84 . exon 47013 47125 . - . ID=Phyra96534.2;Parent=Phyra96534;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_84 . CDS 47205 47713 . - 0 ID=Phyra96534;Parent=Phyra96534;rank=1 scaffold_84 . exon 47205 47713 . - . ID=Phyra96534.1;Parent=Phyra96534;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 ensembl protein_coding_gene 47909 50470 . + . ID=Phyra96535;biotype=protein_coding;external_name=C_scaffold_84000002;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 47909 50470 . + . ID=Phyra96535;Parent=Phyra96535;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 47909 48156 . + 0 ID=Phyra96535;Parent=Phyra96535;rank=1 scaffold_84 . exon 47909 48156 . + . ID=Phyra96535.1;Parent=Phyra96535;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 . CDS 48230 48433 . + 0 ID=Phyra96535;Parent=Phyra96535;rank=2 scaffold_84 . exon 48230 48433 . + . ID=Phyra96535.2;Parent=Phyra96535;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_84 . CDS 48505 48742 . + 0 ID=Phyra96535;Parent=Phyra96535;rank=3 scaffold_84 . exon 48505 48742 . + . ID=Phyra96535.3;Parent=Phyra96535;constitutive=1;ensembl_phase=2;rank=3 scaffold_84 . CDS 48920 49000 . + 0 ID=Phyra96535;Parent=Phyra96535;rank=4 scaffold_84 . exon 48920 49000 . + . ID=Phyra96535.4;Parent=Phyra96535;constitutive=1;rank=4 scaffold_84 . CDS 49145 49195 . + 0 ID=Phyra96535;Parent=Phyra96535;rank=5 scaffold_84 . exon 49145 49195 . + . ID=Phyra96535.5;Parent=Phyra96535;constitutive=1;rank=5 scaffold_84 . CDS 49276 49359 . + 0 ID=Phyra96535;Parent=Phyra96535;rank=6 scaffold_84 . exon 49276 49359 . + . ID=Phyra96535.6;Parent=Phyra96535;constitutive=1;rank=6 scaffold_84 . CDS 49744 49887 . + 0 ID=Phyra96535;Parent=Phyra96535;rank=7 scaffold_84 . CDS 50117 50470 . + 0 ID=Phyra96535;Parent=Phyra96535;rank=8 scaffold_84 ensembl protein_coding_gene 50562 51381 . - . ID=Phyra72086;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_84000002;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 50562 51381 . - . ID=Phyra72086;Parent=Phyra72086;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 50562 50861 . - 0 ID=Phyra72086;Parent=Phyra72086;rank=3 scaffold_84 . exon 50562 50861 . - . ID=Phyra72086.3;Parent=Phyra72086;constitutive=1;rank=3 scaffold_84 . CDS 50933 51124 . - 0 ID=Phyra72086;Parent=Phyra72086;rank=2 scaffold_84 . exon 50933 51124 . - . ID=Phyra72086.2;Parent=Phyra72086;constitutive=1;rank=2 scaffold_84 . CDS 51196 51381 . - 0 ID=Phyra72086;Parent=Phyra72086;rank=1 scaffold_84 . exon 51196 51381 . - . ID=Phyra72086.1;Parent=Phyra72086;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 51624 55141 . + . ID=Phyra83187;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000013;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 51624 55141 . + . ID=Phyra83187;Parent=Phyra83187;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . exon 51624 52301 . + . ID=Phyra83187.1;Parent=Phyra83187;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_84 . CDS 51626 52301 . + 0 ID=Phyra83187;Parent=Phyra83187;rank=1 scaffold_84 . CDS 52369 52524 . + 0 ID=Phyra83187;Parent=Phyra83187;rank=2 scaffold_84 . exon 52369 52524 . + . ID=Phyra83187.2;Parent=Phyra83187;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_84 . CDS 52617 53887 . + 0 ID=Phyra83187;Parent=Phyra83187;rank=3 scaffold_84 . exon 52617 53887 . + . ID=Phyra83187.3;Parent=Phyra83187;constitutive=1;ensembl_phase=1;rank=3 scaffold_84 . CDS 54317 54545 . + 0 ID=Phyra83187;Parent=Phyra83187;rank=4 scaffold_84 . exon 54317 54545 . + . ID=Phyra83187.4;Parent=Phyra83187;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_84 . CDS 54711 54825 . + 0 ID=Phyra83187;Parent=Phyra83187;rank=5 scaffold_84 . exon 54711 54825 . + . ID=Phyra83187.5;Parent=Phyra83187;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_84 . CDS 55045 55070 . + 0 ID=Phyra83187;Parent=Phyra83187;rank=6 scaffold_84 . exon 55045 55070 . + . ID=Phyra83187.6;Parent=Phyra83187;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_84 . CDS 55095 55141 . + 0 ID=Phyra83187;Parent=Phyra83187;rank=7 scaffold_84 . exon 55095 55141 . + . ID=Phyra83187.7;Parent=Phyra83187;constitutive=1;ensembl_phase=1;rank=7 scaffold_84 ensembl protein_coding_gene 55468 57653 . - . ID=Phyra83188;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000014;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 55468 57653 . - . ID=Phyra83188;Parent=Phyra83188;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 55468 55622 . - 0 ID=Phyra83188;Parent=Phyra83188;rank=4 scaffold_84 . exon 55468 55622 . - . ID=Phyra83188.4;Parent=Phyra83188;constitutive=1;ensembl_phase=1;rank=4 scaffold_84 . CDS 55690 55800 . - 0 ID=Phyra83188;Parent=Phyra83188;rank=3 scaffold_84 . exon 55690 55800 . - . ID=Phyra83188.3;Parent=Phyra83188;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_84 . CDS 55855 56217 . - 0 ID=Phyra83188;Parent=Phyra83188;rank=2 scaffold_84 . exon 55855 56217 . - . ID=Phyra83188.2;Parent=Phyra83188;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_84 . CDS 56363 57653 . - 0 ID=Phyra83188;Parent=Phyra83188;rank=1 scaffold_84 . exon 56363 57653 . - . ID=Phyra83188.1;Parent=Phyra83188;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 . exon 49744 49887 . + . ID=Phyra96535.7;Parent=Phyra96535;constitutive=1;rank=7 scaffold_84 . exon 50117 50470 . + . ID=Phyra96535.8;Parent=Phyra96535;constitutive=1;rank=8 scaffold_84 . repeat_region 62487 62534 . ? . description=trf scaffold_84 . biological_region 62632 62635 0.999 + . logic_name=eponine scaffold_84 . biological_region 62708 62713 0.999 - . logic_name=eponine scaffold_84 . biological_region 62764 62766 0.999 + . logic_name=eponine scaffold_84 ensembl protein_coding_gene 66965 68437 . + . ID=Phyra83191;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000017;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 66965 68437 . + . ID=Phyra83191;Parent=Phyra83191;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 66965 68437 . + 0 ID=Phyra83191;Parent=Phyra83191;rank=1 scaffold_84 . exon 66965 68437 . + . ID=Phyra83191.1;Parent=Phyra83191;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 60895 62152 . - . ID=Phyra96537;biotype=protein_coding;external_name=C_scaffold_84000004;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 60895 62152 . - . ID=Phyra96537;Parent=Phyra96537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 60895 60912 . - 0 ID=Phyra96537;Parent=Phyra96537;rank=3 scaffold_84 . exon 60895 60912 . - . ID=Phyra96537.3;Parent=Phyra96537;constitutive=1;rank=3 scaffold_84 . CDS 61038 61615 . - 0 ID=Phyra96537;Parent=Phyra96537;rank=2 scaffold_84 . exon 61038 61615 . - . ID=Phyra96537.2;Parent=Phyra96537;constitutive=1;ensembl_phase=1;rank=2 scaffold_84 . CDS 61672 62152 . - 0 ID=Phyra96537;Parent=Phyra96537;rank=1 scaffold_84 . exon 61672 62152 . - . ID=Phyra96537.1;Parent=Phyra96537;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 ensembl protein_coding_gene 62442 63167 . + . ID=Phyra96538;biotype=protein_coding;external_name=C_scaffold_84000005;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 62442 63167 . + . ID=Phyra96538;Parent=Phyra96538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 62442 62841 . + 0 ID=Phyra96538;Parent=Phyra96538;rank=1 scaffold_84 . exon 62442 62841 . + . ID=Phyra96538.1;Parent=Phyra96538;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 . CDS 62909 63001 . + 0 ID=Phyra96538;Parent=Phyra96538;rank=2 scaffold_84 . exon 62909 63001 . + . ID=Phyra96538.2;Parent=Phyra96538;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_84 . CDS 63067 63167 . + 0 ID=Phyra96538;Parent=Phyra96538;rank=3 scaffold_84 . exon 63067 63167 . + . ID=Phyra96538.3;Parent=Phyra96538;constitutive=1;ensembl_phase=1;rank=3 scaffold_84 ensembl protein_coding_gene 70048 72108 . + . ID=Phyra83192;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000018;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 70048 72108 . + . ID=Phyra83192;Parent=Phyra83192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 70048 72108 . + 0 ID=Phyra83192;Parent=Phyra83192;rank=1 scaffold_84 . exon 70048 72108 . + . ID=Phyra83192.1;Parent=Phyra83192;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 78310 80286 . - . ID=Phyra83195;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000021;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 78310 80286 . - . ID=Phyra83195;Parent=Phyra83195;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 78310 78959 . - 0 ID=Phyra83195;Parent=Phyra83195;rank=3 scaffold_84 . exon 78310 78959 . - . ID=Phyra83195.3;Parent=Phyra83195;constitutive=1;ensembl_phase=1;rank=3 scaffold_84 . CDS 79048 80077 . - 0 ID=Phyra83195;Parent=Phyra83195;rank=2 scaffold_84 . exon 79048 80077 . - . ID=Phyra83195.2;Parent=Phyra83195;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_84 . CDS 80158 80286 . - 0 ID=Phyra83195;Parent=Phyra83195;rank=1 scaffold_84 ensembl protein_coding_gene 72418 73506 . - . ID=Phyra96539;biotype=protein_coding;external_name=C_scaffold_84000006;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 72418 73506 . - . ID=Phyra96539;Parent=Phyra96539;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 72418 72585 . - 0 ID=Phyra96539;Parent=Phyra96539;rank=4 scaffold_84 . exon 72418 72585 . - . ID=Phyra96539.4;Parent=Phyra96539;constitutive=1;rank=4 scaffold_84 . CDS 72655 72734 . - 0 ID=Phyra96539;Parent=Phyra96539;rank=3 scaffold_84 . exon 72655 72734 . - . ID=Phyra96539.3;Parent=Phyra96539;constitutive=1;ensembl_phase=1;rank=3 scaffold_84 . CDS 72813 73308 . - 0 ID=Phyra96539;Parent=Phyra96539;rank=2 scaffold_84 . exon 72813 73308 . - . ID=Phyra96539.2;Parent=Phyra96539;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_84 . CDS 73372 73506 . - 0 ID=Phyra96539;Parent=Phyra96539;rank=1 scaffold_84 . exon 73372 73506 . - . ID=Phyra96539.1;Parent=Phyra96539;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 74064 77260 . + . ID=Phyra96540;biotype=protein_coding;external_name=C_scaffold_84000007;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 74064 77260 . + . ID=Phyra96540;Parent=Phyra96540;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 74064 74447 . + 0 ID=Phyra96540;Parent=Phyra96540;rank=1 scaffold_84 . exon 74064 74447 . + . ID=Phyra96540.1;Parent=Phyra96540;constitutive=1;rank=1 scaffold_84 . CDS 74513 74670 . + 0 ID=Phyra96540;Parent=Phyra96540;rank=2 scaffold_84 . exon 74513 74670 . + . ID=Phyra96540.2;Parent=Phyra96540;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_84 . CDS 74738 75105 . + 0 ID=Phyra96540;Parent=Phyra96540;rank=3 scaffold_84 . exon 74738 75105 . + . ID=Phyra96540.3;Parent=Phyra96540;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_84 . CDS 75670 75843 . + 0 ID=Phyra96540;Parent=Phyra96540;rank=4 scaffold_84 . exon 75670 75843 . + . ID=Phyra96540.4;Parent=Phyra96540;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_84 . CDS 75967 76111 . + 0 ID=Phyra96540;Parent=Phyra96540;rank=5 scaffold_84 . exon 75967 76111 . + . ID=Phyra96540.5;Parent=Phyra96540;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_84 . CDS 76244 76262 . + 0 ID=Phyra96540;Parent=Phyra96540;rank=6 scaffold_84 . exon 76244 76262 . + . ID=Phyra96540.6;Parent=Phyra96540;constitutive=1;ensembl_phase=2;rank=6 scaffold_84 . CDS 76551 76736 . + 0 ID=Phyra96540;Parent=Phyra96540;rank=7 scaffold_84 . exon 76551 76736 . + . ID=Phyra96540.7;Parent=Phyra96540;constitutive=1;rank=7 scaffold_84 . CDS 76794 76928 . + 0 ID=Phyra96540;Parent=Phyra96540;rank=8 scaffold_84 . exon 76794 76928 . + . ID=Phyra96540.8;Parent=Phyra96540;constitutive=1;rank=8 scaffold_84 . CDS 76999 77070 . + 0 ID=Phyra96540;Parent=Phyra96540;rank=9 scaffold_84 . exon 76999 77070 . + . ID=Phyra96540.9;Parent=Phyra96540;constitutive=1;rank=9 scaffold_84 . CDS 77249 77260 . + 0 ID=Phyra96540;Parent=Phyra96540;rank=10 scaffold_84 . exon 77249 77260 . + . ID=Phyra96540.10;Parent=Phyra96540;constitutive=1;rank=10 scaffold_84 . biological_region 80674 80677 0.999 - . logic_name=eponine scaffold_84 . biological_region 80791 80796 0.999 + . logic_name=eponine scaffold_84 . biological_region 81287 81290 0.999 - . logic_name=eponine scaffold_84 . biological_region 86903 86903 0.999 + . logic_name=eponine scaffold_84 . exon 80158 80286 . - . ID=Phyra83195.1;Parent=Phyra83195;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 80450 88729 . + . ID=Phyra83196;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000022;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 80450 88729 . + . ID=Phyra83196;Parent=Phyra83196;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 80450 88729 . + 0 ID=Phyra83196;Parent=Phyra83196;rank=1 scaffold_84 . exon 80450 88729 . + . ID=Phyra83196.1;Parent=Phyra83196;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 88951 89913 . - . ID=Phyra96542;biotype=protein_coding;external_name=C_scaffold_84000009;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 88951 89913 . - . ID=Phyra96542;Parent=Phyra96542;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 88951 89082 . - 0 ID=Phyra96542;Parent=Phyra96542;rank=5 scaffold_84 . exon 88951 89082 . - . ID=Phyra96542.5;Parent=Phyra96542;constitutive=1;rank=5 scaffold_84 . CDS 89182 89312 . - 0 ID=Phyra96542;Parent=Phyra96542;rank=4 scaffold_84 . exon 89182 89312 . - . ID=Phyra96542.4;Parent=Phyra96542;constitutive=1;ensembl_phase=1;rank=4 scaffold_84 . CDS 89382 89535 . - 0 ID=Phyra96542;Parent=Phyra96542;rank=3 scaffold_84 . exon 89382 89535 . - . ID=Phyra96542.3;Parent=Phyra96542;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_84 . CDS 89566 89614 . - 0 ID=Phyra96542;Parent=Phyra96542;rank=2 scaffold_84 . CDS 89681 89913 . - 0 ID=Phyra96542;Parent=Phyra96542;rank=1 scaffold_84 . repeat_region 95281 95310 . ? . description=trf scaffold_84 . repeat_region 95281 95310 . ? . description=dust scaffold_84 ensembl protein_coding_gene 90143 92241 . - . ID=Phyra83198;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000024;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 90143 92241 . - . ID=Phyra83198;Parent=Phyra83198;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 90143 90397 . - 0 ID=Phyra83198;Parent=Phyra83198;rank=7 scaffold_84 . exon 90143 90397 . - . ID=Phyra83198.7;Parent=Phyra83198;constitutive=1;rank=7 scaffold_84 . CDS 90480 90716 . - 0 ID=Phyra83198;Parent=Phyra83198;rank=6 scaffold_84 . exon 90480 90716 . - . ID=Phyra83198.6;Parent=Phyra83198;constitutive=1;rank=6 scaffold_84 . CDS 90780 91211 . - 0 ID=Phyra83198;Parent=Phyra83198;rank=5 scaffold_84 . exon 90780 91211 . - . ID=Phyra83198.5;Parent=Phyra83198;constitutive=1;rank=5 scaffold_84 . CDS 91292 91504 . - 0 ID=Phyra83198;Parent=Phyra83198;rank=4 scaffold_84 . exon 91292 91504 . - . ID=Phyra83198.4;Parent=Phyra83198;constitutive=1;rank=4 scaffold_84 . CDS 91581 91888 . - 0 ID=Phyra83198;Parent=Phyra83198;rank=3 scaffold_84 . exon 91581 91888 . - . ID=Phyra83198.3;Parent=Phyra83198;constitutive=1;ensembl_phase=1;rank=3 scaffold_84 . CDS 91952 92016 . - 0 ID=Phyra83198;Parent=Phyra83198;rank=2 scaffold_84 . exon 91952 92016 . - . ID=Phyra83198.2;Parent=Phyra83198;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_84 . CDS 92150 92241 . - 0 ID=Phyra83198;Parent=Phyra83198;rank=1 scaffold_84 . exon 92150 92241 . - . ID=Phyra83198.1;Parent=Phyra83198;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 ensembl protein_coding_gene 92431 94661 . - . ID=Phyra83199;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000025;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 92431 94661 . - . ID=Phyra83199;Parent=Phyra83199;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 92431 92575 . - 0 ID=Phyra83199;Parent=Phyra83199;rank=9 scaffold_84 . exon 92431 92575 . - . ID=Phyra83199.9;Parent=Phyra83199;constitutive=1;ensembl_phase=2;rank=9 scaffold_84 . CDS 92655 92705 . - 0 ID=Phyra83199;Parent=Phyra83199;rank=8 scaffold_84 . exon 92655 92705 . - . ID=Phyra83199.8;Parent=Phyra83199;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_84 . CDS 92985 93030 . - 0 ID=Phyra83199;Parent=Phyra83199;rank=7 scaffold_84 . exon 92985 93030 . - . ID=Phyra83199.7;Parent=Phyra83199;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_84 . CDS 93079 93241 . - 0 ID=Phyra83199;Parent=Phyra83199;rank=6 scaffold_84 . exon 93079 93241 . - . ID=Phyra83199.6;Parent=Phyra83199;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_84 . CDS 93307 93707 . - 0 ID=Phyra83199;Parent=Phyra83199;rank=5 scaffold_84 . exon 93307 93707 . - . ID=Phyra83199.5;Parent=Phyra83199;constitutive=1;ensembl_phase=1;rank=5 scaffold_84 . CDS 93775 93884 . - 0 ID=Phyra83199;Parent=Phyra83199;rank=4 scaffold_84 . exon 93775 93884 . - . ID=Phyra83199.4;Parent=Phyra83199;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_84 . CDS 94026 94185 . - 0 ID=Phyra83199;Parent=Phyra83199;rank=3 scaffold_84 . exon 94026 94185 . - . ID=Phyra83199.3;Parent=Phyra83199;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_84 . CDS 94263 94443 . - 0 ID=Phyra83199;Parent=Phyra83199;rank=2 scaffold_84 . exon 94263 94443 . - . ID=Phyra83199.2;Parent=Phyra83199;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_84 . CDS 94500 94661 . - 0 ID=Phyra83199;Parent=Phyra83199;rank=1 scaffold_84 . exon 94500 94661 . - . ID=Phyra83199.1;Parent=Phyra83199;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 95040 96794 . - . ID=Phyra83200;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000026;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 95040 96794 . - . ID=Phyra83200;Parent=Phyra83200;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 95040 96794 . - 0 ID=Phyra83200;Parent=Phyra83200;rank=1 scaffold_84 . exon 95040 96794 . - . ID=Phyra83200.1;Parent=Phyra83200;constitutive=1;rank=1 scaffold_84 . exon 89566 89614 . - . ID=Phyra96542.2;Parent=Phyra96542;constitutive=1;ensembl_phase=2;rank=2 scaffold_84 . exon 89681 89913 . - . ID=Phyra96542.1;Parent=Phyra96542;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 . biological_region 102528 102534 0.999 - . logic_name=eponine scaffold_84 . biological_region 102609 102611 0.999 - . logic_name=eponine scaffold_84 . repeat_region 112411 112464 . ? . description=dust scaffold_84 . repeat_region 117224 117233 . ? . description=dust scaffold_84 . repeat_region 117626 117855 . + . description=GypsyPi-1c_LTR scaffold_84 . repeat_region 118008 118020 . ? . description=dust scaffold_84 . repeat_region 118389 118441 . ? . description=trf scaffold_84 . repeat_region 118709 118764 . ? . description=trf scaffold_84 . repeat_region 119156 119164 . ? . description=dust scaffold_84 ensembl protein_coding_gene 110688 112066 . + . ID=Phyra53804;biotype=protein_coding;external_name=gwEuk.84.27.1;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 110688 112066 . + . ID=Phyra53804;Parent=Phyra53804;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 110688 110715 . + 0 ID=Phyra53804;Parent=Phyra53804;rank=1 scaffold_84 . exon 110688 110715 . + . ID=Phyra53804.1;Parent=Phyra53804;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 . CDS 110793 110940 . + 0 ID=Phyra53804;Parent=Phyra53804;rank=2 scaffold_84 . exon 110793 110940 . + . ID=Phyra53804.2;Parent=Phyra53804;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_84 . CDS 111021 111126 . + 0 ID=Phyra53804;Parent=Phyra53804;rank=3 scaffold_84 . exon 111021 111126 . + . ID=Phyra53804.3;Parent=Phyra53804;constitutive=1;ensembl_phase=2;rank=3 scaffold_84 . CDS 111200 111285 . + 0 ID=Phyra53804;Parent=Phyra53804;rank=4 scaffold_84 . exon 111200 111285 . + . ID=Phyra53804.4;Parent=Phyra53804;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_84 . CDS 111363 111455 . + 0 ID=Phyra53804;Parent=Phyra53804;rank=5 scaffold_84 . exon 111363 111455 . + . ID=Phyra53804.5;Parent=Phyra53804;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_84 . CDS 111514 111581 . + 0 ID=Phyra53804;Parent=Phyra53804;rank=6 scaffold_84 . exon 111514 111581 . + . ID=Phyra53804.6;Parent=Phyra53804;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_84 . CDS 111656 111764 . + 0 ID=Phyra53804;Parent=Phyra53804;rank=7 scaffold_84 . exon 111656 111764 . + . ID=Phyra53804.7;Parent=Phyra53804;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_84 . CDS 111838 112066 . + 0 ID=Phyra53804;Parent=Phyra53804;rank=8 scaffold_84 . exon 111838 112066 . + . ID=Phyra53804.8;Parent=Phyra53804;constitutive=1;ensembl_phase=2;rank=8 scaffold_84 ensembl protein_coding_gene 113386 114651 . - . ID=Phyra72088;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_84000004;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 113386 114651 . - . ID=Phyra72088;Parent=Phyra72088;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 113386 114651 . - 0 ID=Phyra72088;Parent=Phyra72088;rank=1 scaffold_84 . exon 113386 114651 . - . ID=Phyra72088.1;Parent=Phyra72088;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 115570 116849 . - . ID=Phyra72089;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_84000005;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 115570 116849 . - . ID=Phyra72089;Parent=Phyra72089;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 115570 115626 . - 0 ID=Phyra72089;Parent=Phyra72089;rank=2 scaffold_84 . exon 115570 115626 . - . ID=Phyra72089.2;Parent=Phyra72089;constitutive=1;rank=2 scaffold_84 . CDS 115728 116849 . - 0 ID=Phyra72089;Parent=Phyra72089;rank=1 scaffold_84 . exon 115728 116849 . - . ID=Phyra72089.1;Parent=Phyra72089;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 112171 112983 . - . ID=Phyra96546;biotype=protein_coding;external_name=C_scaffold_84000013;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 112171 112983 . - . ID=Phyra96546;Parent=Phyra96546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 112171 112296 . - 0 ID=Phyra96546;Parent=Phyra96546;rank=2 scaffold_84 . exon 112171 112296 . - . ID=Phyra96546.2;Parent=Phyra96546;constitutive=1;rank=2 scaffold_84 . CDS 112324 112983 . - 0 ID=Phyra96546;Parent=Phyra96546;rank=1 scaffold_84 . exon 112324 112983 . - . ID=Phyra96546.1;Parent=Phyra96546;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 129145 130920 . - . ID=Phyra72090;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_84000006;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 129145 130920 . - . ID=Phyra72090;Parent=Phyra72090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 129145 130920 . - 0 ID=Phyra72090;Parent=Phyra72090;rank=1 scaffold_84 . exon 129145 130920 . - . ID=Phyra72090.1;Parent=Phyra72090;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 123993 124756 . + . ID=Phyra83204;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000030;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 123993 124756 . + . ID=Phyra83204;Parent=Phyra83204;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 123993 124145 . + 0 ID=Phyra83204;Parent=Phyra83204;rank=1 scaffold_84 . exon 123993 124145 . + . ID=Phyra83204.1;Parent=Phyra83204;constitutive=1;rank=1 scaffold_84 . CDS 124382 124756 . + 0 ID=Phyra83204;Parent=Phyra83204;rank=2 scaffold_84 . exon 124382 124756 . + . ID=Phyra83204.2;Parent=Phyra83204;constitutive=1;rank=2 scaffold_84 ensembl protein_coding_gene 126111 127004 . - . ID=Phyra83205;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000031;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 126111 127004 . - . ID=Phyra83205;Parent=Phyra83205;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 126111 126522 . - 0 ID=Phyra83205;Parent=Phyra83205;rank=3 scaffold_84 . exon 126111 126522 . - . ID=Phyra83205.3;Parent=Phyra83205;constitutive=1;ensembl_phase=2;rank=3 scaffold_84 . CDS 126746 126767 . - 0 ID=Phyra83205;Parent=Phyra83205;rank=2 scaffold_84 . exon 126746 126767 . - . ID=Phyra83205.2;Parent=Phyra83205;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_84 . CDS 126983 127004 . - 0 ID=Phyra83205;Parent=Phyra83205;rank=1 scaffold_84 . exon 126983 127004 . - . ID=Phyra83205.1;Parent=Phyra83205;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 ensembl protein_coding_gene 127761 128521 . + . ID=Phyra83206;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000032;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 127761 128521 . + . ID=Phyra83206;Parent=Phyra83206;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 127761 127770 . + 0 ID=Phyra83206;Parent=Phyra83206;rank=1 scaffold_84 . exon 127761 127770 . + . ID=Phyra83206.1;Parent=Phyra83206;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 . CDS 128031 128190 . + 0 ID=Phyra83206;Parent=Phyra83206;rank=2 scaffold_84 . exon 128031 128190 . + . ID=Phyra83206.2;Parent=Phyra83206;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_84 . CDS 128254 128521 . + 0 ID=Phyra83206;Parent=Phyra83206;rank=3 scaffold_84 . exon 128254 128521 . + . ID=Phyra83206.3;Parent=Phyra83206;constitutive=1;ensembl_phase=2;rank=3 scaffold_84 . biological_region 129982 129986 0.999 + . logic_name=eponine scaffold_84 . biological_region 130510 130513 0.999 + . logic_name=eponine scaffold_84 . biological_region 130577 130583 0.999 - . logic_name=eponine scaffold_84 . biological_region 130613 130620 0.999 - . logic_name=eponine scaffold_84 . biological_region 130791 130799 0.999 - . logic_name=eponine scaffold_84 . biological_region 136910 136911 0.999 - . logic_name=eponine scaffold_84 . biological_region 137747 137749 0.999 + . logic_name=eponine scaffold_84 . biological_region 137773 137775 0.999 + . logic_name=eponine scaffold_84 . biological_region 137980 137985 0.999 - . logic_name=eponine scaffold_84 . biological_region 138053 138055 0.999 - . logic_name=eponine scaffold_84 . biological_region 138134 138137 0.999 + . logic_name=eponine scaffold_84 . biological_region 138198 138202 0.999 - . logic_name=eponine scaffold_84 ensembl protein_coding_gene 134977 135777 . - . ID=Phyra83210;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000036;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 134977 135777 . - . ID=Phyra83210;Parent=Phyra83210;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 134977 135777 . - 0 ID=Phyra83210;Parent=Phyra83210;rank=1 scaffold_84 . exon 134977 135777 . - . ID=Phyra83210.1;Parent=Phyra83210;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 136695 137508 . + . ID=Phyra83211;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000037;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 136695 137508 . + . ID=Phyra83211;Parent=Phyra83211;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 136695 136862 . + 0 ID=Phyra83211;Parent=Phyra83211;rank=1 scaffold_84 . exon 136695 136862 . + . ID=Phyra83211.1;Parent=Phyra83211;constitutive=1;rank=1 scaffold_84 . CDS 136942 137133 . + 0 ID=Phyra83211;Parent=Phyra83211;rank=2 scaffold_84 . exon 136942 137133 . + . ID=Phyra83211.2;Parent=Phyra83211;constitutive=1;rank=2 scaffold_84 . CDS 137203 137508 . + 0 ID=Phyra83211;Parent=Phyra83211;rank=3 scaffold_84 . exon 137203 137508 . + . ID=Phyra83211.3;Parent=Phyra83211;constitutive=1;rank=3 scaffold_84 ensembl protein_coding_gene 137652 138917 . + . ID=Phyra83212;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000038;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 137652 138917 . + . ID=Phyra83212;Parent=Phyra83212;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 137652 138721 . + 0 ID=Phyra83212;Parent=Phyra83212;rank=1 scaffold_84 . exon 137652 138721 . + . ID=Phyra83212.1;Parent=Phyra83212;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 . CDS 138797 138917 . + 0 ID=Phyra83212;Parent=Phyra83212;rank=2 scaffold_84 . exon 138797 138917 . + . ID=Phyra83212.2;Parent=Phyra83212;constitutive=1;ensembl_phase=2;rank=2 scaffold_84 ensembl protein_coding_gene 131974 132531 . + . ID=Phyra96550;biotype=protein_coding;external_name=C_scaffold_84000017;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 131974 132531 . + . ID=Phyra96550;Parent=Phyra96550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . exon 131974 132404 . + . ID=Phyra96550.1;Parent=Phyra96550;constitutive=1;ensembl_phase=-1;rank=1 scaffold_84 . CDS 131976 132404 . + 0 ID=Phyra96550;Parent=Phyra96550;rank=1 scaffold_84 . CDS 132445 132531 . + 0 ID=Phyra96550;Parent=Phyra96550;rank=2 scaffold_84 . exon 132445 132531 . + . ID=Phyra96550.2;Parent=Phyra96550;constitutive=1;rank=2 scaffold_84 ensembl protein_coding_gene 132613 134850 . - . ID=Phyra96552;biotype=protein_coding;external_name=C_scaffold_84000019;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 132613 134850 . - . ID=Phyra96552;Parent=Phyra96552;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 132613 132734 . - 0 ID=Phyra96552;Parent=Phyra96552;rank=4 scaffold_84 . exon 132613 132734 . - . ID=Phyra96552.4;Parent=Phyra96552;constitutive=1;ensembl_phase=1;rank=4 scaffold_84 . CDS 133107 133236 . - 0 ID=Phyra96552;Parent=Phyra96552;rank=3 scaffold_84 . exon 133107 133236 . - . ID=Phyra96552.3;Parent=Phyra96552;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_84 . CDS 133396 133856 . - 0 ID=Phyra96552;Parent=Phyra96552;rank=2 scaffold_84 . exon 133396 133856 . - . ID=Phyra96552.2;Parent=Phyra96552;constitutive=1;ensembl_phase=1;rank=2 scaffold_84 . CDS 134241 134850 . - 0 ID=Phyra96552;Parent=Phyra96552;rank=1 scaffold_84 . exon 134241 134850 . - . ID=Phyra96552.1;Parent=Phyra96552;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 . repeat_region 142802 142819 . ? . description=dust scaffold_84 ensembl protein_coding_gene 139434 140942 . + . ID=Phyra83213;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000039;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 139434 140942 . + . ID=Phyra83213;Parent=Phyra83213;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 139434 140942 . + 0 ID=Phyra83213;Parent=Phyra83213;rank=1 scaffold_84 . exon 139434 140942 . + . ID=Phyra83213.1;Parent=Phyra83213;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 144506 147280 . + . ID=Phyra83216;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000042;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 144506 147280 . + . ID=Phyra83216;Parent=Phyra83216;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 144506 147280 . + 0 ID=Phyra83216;Parent=Phyra83216;rank=1 scaffold_84 . exon 144506 147280 . + . ID=Phyra83216.1;Parent=Phyra83216;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 147363 150065 . - . ID=Phyra83217;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000043;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 147363 150065 . - . ID=Phyra83217;Parent=Phyra83217;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 147363 150065 . - 0 ID=Phyra83217;Parent=Phyra83217;rank=1 scaffold_84 . exon 147363 150065 . - . ID=Phyra83217.1;Parent=Phyra83217;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 141057 142289 . - . ID=Phyra96554;biotype=protein_coding;external_name=C_scaffold_84000021;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 141057 142289 . - . ID=Phyra96554;Parent=Phyra96554;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 141057 141203 . - 0 ID=Phyra96554;Parent=Phyra96554;rank=4 scaffold_84 . exon 141057 141203 . - . ID=Phyra96554.4;Parent=Phyra96554;constitutive=1;rank=4 scaffold_84 . CDS 141240 141409 . - 0 ID=Phyra96554;Parent=Phyra96554;rank=3 scaffold_84 . exon 141240 141409 . - . ID=Phyra96554.3;Parent=Phyra96554;constitutive=1;ensembl_phase=1;rank=3 scaffold_84 . CDS 141476 141609 . - 0 ID=Phyra96554;Parent=Phyra96554;rank=2 scaffold_84 . exon 141476 141609 . - . ID=Phyra96554.2;Parent=Phyra96554;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_84 . CDS 141883 142289 . - 0 ID=Phyra96554;Parent=Phyra96554;rank=1 scaffold_84 . exon 141883 142289 . - . ID=Phyra96554.1;Parent=Phyra96554;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 . biological_region 153165 153166 0.999 + . logic_name=eponine scaffold_84 . repeat_region 153910 153961 . ? . description=trf scaffold_84 . repeat_region 155648 155679 . ? . description=trf scaffold_84 . repeat_region 156250 156273 . ? . description=trf scaffold_84 ensembl protein_coding_gene 150627 153356 . - . ID=Phyra83218;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000044;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 150627 153356 . - . ID=Phyra83218;Parent=Phyra83218;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 150627 153356 . - 0 ID=Phyra83218;Parent=Phyra83218;rank=1 scaffold_84 . exon 150627 153356 . - . ID=Phyra83218.1;Parent=Phyra83218;constitutive=1;rank=1 scaffold_84 . repeat_region 163659 163667 . ? . description=dust scaffold_84 . repeat_region 164416 164438 . ? . description=dust scaffold_84 . repeat_region 176401 176834 . - . description=GypsyPi-1c_I-int scaffold_84 . repeat_region 177783 177826 . ? . description=trf scaffold_84 . repeat_region 178102 178165 . ? . description=trf scaffold_84 . repeat_region 178144 178286 . ? . description=trf scaffold_84 . repeat_region 178213 178248 . ? . description=trf scaffold_84 . repeat_region 178298 178329 . ? . description=trf scaffold_84 ensembl protein_coding_gene 177529 178332 . + . ID=Phyra83219;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000045;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 177529 178332 . + . ID=Phyra83219;Parent=Phyra83219;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 177529 178332 . + 0 ID=Phyra83219;Parent=Phyra83219;rank=1 scaffold_84 . exon 177529 178332 . + . ID=Phyra83219.1;Parent=Phyra83219;constitutive=1;rank=1 scaffold_84 . biological_region 179344 179350 0.999 - . logic_name=eponine scaffold_84 . biological_region 179831 179836 0.999 + . logic_name=eponine scaffold_84 . biological_region 181047 181049 0.999 - . logic_name=eponine scaffold_84 . biological_region 188238 188240 0.999 + . logic_name=eponine scaffold_84 . biological_region 188275 188278 0.999 - . logic_name=eponine scaffold_84 ensembl protein_coding_gene 179005 180234 . + . ID=Phyra83220;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000046;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 179005 180234 . + . ID=Phyra83220;Parent=Phyra83220;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 179005 180234 . + 0 ID=Phyra83220;Parent=Phyra83220;rank=1 scaffold_84 . exon 179005 180234 . + . ID=Phyra83220.1;Parent=Phyra83220;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 180712 181932 . + . ID=Phyra83221;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000047;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 180712 181932 . + . ID=Phyra83221;Parent=Phyra83221;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 180712 181932 . + 0 ID=Phyra83221;Parent=Phyra83221;rank=1 scaffold_84 . exon 180712 181932 . + . ID=Phyra83221.1;Parent=Phyra83221;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 182512 184956 . + . ID=Phyra83222;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000048;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 182512 184956 . + . ID=Phyra83222;Parent=Phyra83222;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 182512 184956 . + 0 ID=Phyra83222;Parent=Phyra83222;rank=1 scaffold_84 . exon 182512 184956 . + . ID=Phyra83222.1;Parent=Phyra83222;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 185318 186682 . - . ID=Phyra83223;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000049;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 185318 186682 . - . ID=Phyra83223;Parent=Phyra83223;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 185318 186682 . - 0 ID=Phyra83223;Parent=Phyra83223;rank=1 scaffold_84 . exon 185318 186682 . - . ID=Phyra83223.1;Parent=Phyra83223;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 188176 188765 . + . ID=Phyra83224;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000050;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 188176 188765 . + . ID=Phyra83224;Parent=Phyra83224;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 188176 188403 . + 0 ID=Phyra83224;Parent=Phyra83224;rank=1 scaffold_84 . exon 188176 188403 . + . ID=Phyra83224.1;Parent=Phyra83224;constitutive=1;rank=1 scaffold_84 . CDS 188595 188765 . + 0 ID=Phyra83224;Parent=Phyra83224;rank=2 scaffold_84 . exon 188595 188765 . + . ID=Phyra83224.2;Parent=Phyra83224;constitutive=1;rank=2 scaffold_84 . repeat_region 191495 191544 . ? . description=dust scaffold_84 . repeat_region 193466 193515 . ? . description=dust scaffold_84 . repeat_region 194928 199230 . ? . description=dust scaffold_84 ensembl protein_coding_gene 189328 192727 . - . ID=Phyra83225;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000051;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 189328 192727 . - . ID=Phyra83225;Parent=Phyra83225;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 189328 189435 . - 0 ID=Phyra83225;Parent=Phyra83225;rank=8 scaffold_84 . exon 189328 189435 . - . ID=Phyra83225.8;Parent=Phyra83225;constitutive=1;rank=8 scaffold_84 . CDS 189497 189538 . - 0 ID=Phyra83225;Parent=Phyra83225;rank=7 scaffold_84 . exon 189497 189538 . - . ID=Phyra83225.7;Parent=Phyra83225;constitutive=1;rank=7 scaffold_84 . CDS 189608 189658 . - 0 ID=Phyra83225;Parent=Phyra83225;rank=6 scaffold_84 . exon 189608 189658 . - . ID=Phyra83225.6;Parent=Phyra83225;constitutive=1;rank=6 scaffold_84 . CDS 189729 189789 . - 0 ID=Phyra83225;Parent=Phyra83225;rank=5 scaffold_84 . exon 189729 189789 . - . ID=Phyra83225.5;Parent=Phyra83225;constitutive=1;ensembl_phase=2;rank=5 scaffold_84 . CDS 189847 189952 . - 0 ID=Phyra83225;Parent=Phyra83225;rank=4 scaffold_84 . exon 189847 189952 . - . ID=Phyra83225.4;Parent=Phyra83225;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_84 . CDS 190017 190131 . - 0 ID=Phyra83225;Parent=Phyra83225;rank=3 scaffold_84 . exon 190017 190131 . - . ID=Phyra83225.3;Parent=Phyra83225;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_84 . CDS 190254 191382 . - 0 ID=Phyra83225;Parent=Phyra83225;rank=2 scaffold_84 . exon 190254 191382 . - . ID=Phyra83225.2;Parent=Phyra83225;constitutive=1;ensembl_phase=2;rank=2 scaffold_84 . CDS 191565 192727 . - 0 ID=Phyra83225;Parent=Phyra83225;rank=1 scaffold_84 . exon 191565 192727 . - . ID=Phyra83225.1;Parent=Phyra83225;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 ensembl protein_coding_gene 194207 202373 . - . ID=Phyra96555;biotype=protein_coding;external_name=C_scaffold_84000022;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 194207 202373 . - . ID=Phyra96555;Parent=Phyra96555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 194207 194248 . - 0 ID=Phyra96555;Parent=Phyra96555;rank=7 scaffold_84 . exon 194207 194248 . - . ID=Phyra96555.7;Parent=Phyra96555;constitutive=1;rank=7 scaffold_84 . CDS 194318 194368 . - 0 ID=Phyra96555;Parent=Phyra96555;rank=6 scaffold_84 . exon 194318 194368 . - . ID=Phyra96555.6;Parent=Phyra96555;constitutive=1;rank=6 scaffold_84 . CDS 194439 194499 . - 0 ID=Phyra96555;Parent=Phyra96555;rank=5 scaffold_84 . exon 194439 194499 . - . ID=Phyra96555.5;Parent=Phyra96555;constitutive=1;ensembl_phase=2;rank=5 scaffold_84 . CDS 194557 194662 . - 0 ID=Phyra96555;Parent=Phyra96555;rank=4 scaffold_84 . exon 194557 194662 . - . ID=Phyra96555.4;Parent=Phyra96555;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_84 . CDS 194727 194841 . - 0 ID=Phyra96555;Parent=Phyra96555;rank=3 scaffold_84 . exon 194727 194841 . - . ID=Phyra96555.3;Parent=Phyra96555;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_84 . CDS 199350 201292 . - 0 ID=Phyra96555;Parent=Phyra96555;rank=2 scaffold_84 . CDS 201404 202373 . - 0 ID=Phyra96555;Parent=Phyra96555;rank=1 scaffold_84 ensembl protein_coding_gene 207476 207913 . + . ID=Phyra83228;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_84000054;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 207476 207913 . + . ID=Phyra83228;Parent=Phyra83228;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 207476 207913 . + 0 ID=Phyra83228;Parent=Phyra83228;rank=1 scaffold_84 . exon 207476 207913 . + . ID=Phyra83228.1;Parent=Phyra83228;constitutive=1;rank=1 scaffold_84 . exon 199350 201292 . - . ID=Phyra96555.2;Parent=Phyra96555;constitutive=1;ensembl_phase=1;rank=2 scaffold_84 . exon 201404 202373 . - . ID=Phyra96555.1;Parent=Phyra96555;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 ensembl protein_coding_gene 204885 205606 . - . ID=Phyra96556;biotype=protein_coding;external_name=C_scaffold_84000023;logic_name=jgi_phyra1 scaffold_84 ensembl transcript 204885 205606 . - . ID=Phyra96556;Parent=Phyra96556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_84 . CDS 204885 204919 . - 0 ID=Phyra96556;Parent=Phyra96556;rank=3 scaffold_84 . exon 204885 204919 . - . ID=Phyra96556.3;Parent=Phyra96556;constitutive=1;ensembl_phase=1;rank=3 scaffold_84 . CDS 204963 204967 . - 0 ID=Phyra96556;Parent=Phyra96556;rank=2 scaffold_84 . exon 204963 204967 . - . ID=Phyra96556.2;Parent=Phyra96556;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_84 . CDS 205017 205606 . - 0 ID=Phyra96556;Parent=Phyra96556;rank=1 scaffold_84 . exon 205017 205606 . - . ID=Phyra96556.1;Parent=Phyra96556;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_83 1 210596 scaffold_83 . biological_region 2317 2321 0.999 - . logic_name=eponine scaffold_83 . biological_region 5237 5239 0.999 + . logic_name=eponine scaffold_83 . biological_region 5578 5583 0.999 - . logic_name=eponine scaffold_83 . biological_region 5629 5632 0.999 - . logic_name=eponine scaffold_83 . biological_region 5651 5654 0.999 - . logic_name=eponine scaffold_83 . biological_region 6157 6164 0.999 + . logic_name=eponine scaffold_83 . biological_region 6270 6274 0.999 - . logic_name=eponine scaffold_83 . biological_region 6280 6285 0.999 - . logic_name=eponine scaffold_83 . biological_region 6304 6304 0.999 - . logic_name=eponine scaffold_83 . biological_region 6357 6361 0.999 + . logic_name=eponine scaffold_83 . biological_region 6673 6683 0.999 + . logic_name=eponine scaffold_83 . biological_region 6721 6726 0.999 - . logic_name=eponine scaffold_83 . biological_region 7736 7740 0.999 - . logic_name=eponine scaffold_83 ensembl protein_coding_gene 2071 3199 . + . ID=Phyra83105;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000001;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 2071 3199 . + . ID=Phyra83105;Parent=Phyra83105;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 2071 2298 . + 0 ID=Phyra83105;Parent=Phyra83105;rank=1 scaffold_83 . exon 2071 2298 . + . ID=Phyra83105.1;Parent=Phyra83105;constitutive=1;rank=1 scaffold_83 . CDS 2366 3199 . + 0 ID=Phyra83105;Parent=Phyra83105;rank=2 scaffold_83 . exon 2366 3199 . + . ID=Phyra83105.2;Parent=Phyra83105;constitutive=1;rank=2 scaffold_83 ensembl protein_coding_gene 3355 4176 . + . ID=Phyra83106;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000002;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 3355 4176 . + . ID=Phyra83106;Parent=Phyra83106;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 3355 3901 . + 0 ID=Phyra83106;Parent=Phyra83106;rank=1 scaffold_83 . exon 3355 3901 . + . ID=Phyra83106.1;Parent=Phyra83106;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 . CDS 3971 4176 . + 0 ID=Phyra83106;Parent=Phyra83106;rank=2 scaffold_83 . exon 3971 4176 . + . ID=Phyra83106.2;Parent=Phyra83106;constitutive=1;ensembl_phase=1;rank=2 scaffold_83 ensembl protein_coding_gene 4393 5661 . - . ID=Phyra83107;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000003;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 4393 5661 . - . ID=Phyra83107;Parent=Phyra83107;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 4393 5661 . - 0 ID=Phyra83107;Parent=Phyra83107;rank=1 scaffold_83 . exon 4393 5661 . - . ID=Phyra83107.1;Parent=Phyra83107;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 6630 13838 . + . ID=Phyra83108;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000004;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 6630 13838 . + . ID=Phyra83108;Parent=Phyra83108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 6630 13838 . + 0 ID=Phyra83108;Parent=Phyra83108;rank=1 scaffold_83 . exon 6630 13838 . + . ID=Phyra83108.1;Parent=Phyra83108;constitutive=1;rank=1 scaffold_83 . repeat_region 14976 14995 . ? . description=dust scaffold_83 ensembl protein_coding_gene 16967 21083 . + . ID=Phyra83110;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000006;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 16967 21083 . + . ID=Phyra83110;Parent=Phyra83110;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 16967 17247 . + 0 ID=Phyra83110;Parent=Phyra83110;rank=1 scaffold_83 . exon 16967 17247 . + . ID=Phyra83110.1;Parent=Phyra83110;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 . CDS 17349 19122 . + 0 ID=Phyra83110;Parent=Phyra83110;rank=2 scaffold_83 . exon 17349 19122 . + . ID=Phyra83110.2;Parent=Phyra83110;constitutive=1;ensembl_phase=2;rank=2 scaffold_83 . CDS 19368 20003 . + 0 ID=Phyra83110;Parent=Phyra83110;rank=3 scaffold_83 . CDS 20072 20188 . + 0 ID=Phyra83110;Parent=Phyra83110;rank=4 scaffold_83 . CDS 20268 21083 . + 0 ID=Phyra83110;Parent=Phyra83110;rank=5 scaffold_83 ensembl protein_coding_gene 15034 16638 . - . ID=Phyra96522;biotype=protein_coding;external_name=C_scaffold_83000001;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 15034 16638 . - . ID=Phyra96522;Parent=Phyra96522;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 15034 15358 . - 0 ID=Phyra96522;Parent=Phyra96522;rank=3 scaffold_83 . exon 15034 15358 . - . ID=Phyra96522.3;Parent=Phyra96522;constitutive=1;ensembl_phase=2;rank=3 scaffold_83 . CDS 15433 15575 . - 0 ID=Phyra96522;Parent=Phyra96522;rank=2 scaffold_83 . exon 15433 15575 . - . ID=Phyra96522.2;Parent=Phyra96522;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_83 . CDS 15679 16638 . - 0 ID=Phyra96522;Parent=Phyra96522;rank=1 scaffold_83 . exon 15679 16638 . - . ID=Phyra96522.1;Parent=Phyra96522;constitutive=1;rank=1 scaffold_83 . biological_region 19586 19591 0.999 - . logic_name=eponine scaffold_83 . biological_region 23799 23802 0.999 - . logic_name=eponine scaffold_83 . biological_region 23853 23854 0.999 + . logic_name=eponine scaffold_83 . biological_region 27849 27855 0.999 - . logic_name=eponine scaffold_83 ensembl protein_coding_gene 21253 22460 . - . ID=Phyra53706;biotype=protein_coding;external_name=gwEuk.83.11.1;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 21253 22460 . - . ID=Phyra53706;Parent=Phyra53706;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 21253 21904 . - 0 ID=Phyra53706;Parent=Phyra53706;rank=3 scaffold_83 . exon 21253 21904 . - . ID=Phyra53706.3;Parent=Phyra53706;constitutive=1;ensembl_phase=2;rank=3 scaffold_83 . CDS 21959 22228 . - 0 ID=Phyra53706;Parent=Phyra53706;rank=2 scaffold_83 . exon 21959 22228 . - . ID=Phyra53706.2;Parent=Phyra53706;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_83 . CDS 22306 22460 . - 0 ID=Phyra53706;Parent=Phyra53706;rank=1 scaffold_83 . exon 22306 22460 . - . ID=Phyra53706.1;Parent=Phyra53706;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 ensembl protein_coding_gene 23123 23786 . - . ID=Phyra53708;biotype=protein_coding;external_name=gwEuk.83.13.1;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 23123 23786 . - . ID=Phyra53708;Parent=Phyra53708;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 23123 23545 . - 0 ID=Phyra53708;Parent=Phyra53708;rank=2 scaffold_83 . exon 23123 23545 . - . ID=Phyra53708.2;Parent=Phyra53708;constitutive=1;rank=2 scaffold_83 . CDS 23613 23786 . - 0 ID=Phyra53708;Parent=Phyra53708;rank=1 scaffold_83 . exon 23613 23786 . - . ID=Phyra53708.1;Parent=Phyra53708;constitutive=1;rank=1 scaffold_83 . exon 19368 20003 . + . ID=Phyra83110.3;Parent=Phyra83110;constitutive=1;rank=3 scaffold_83 . exon 20072 20188 . + . ID=Phyra83110.4;Parent=Phyra83110;constitutive=1;rank=4 scaffold_83 . exon 20268 21083 . + . ID=Phyra83110.5;Parent=Phyra83110;constitutive=1;rank=5 scaffold_83 ensembl protein_coding_gene 27600 30004 . + . ID=Phyra83112;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000008;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 27600 30004 . + . ID=Phyra83112;Parent=Phyra83112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 27600 28827 . + 0 ID=Phyra83112;Parent=Phyra83112;rank=1 scaffold_83 . exon 27600 28827 . + . ID=Phyra83112.1;Parent=Phyra83112;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 . CDS 28851 30004 . + 0 ID=Phyra83112;Parent=Phyra83112;rank=2 scaffold_83 . exon 28851 30004 . + . ID=Phyra83112.2;Parent=Phyra83112;constitutive=1;ensembl_phase=1;rank=2 scaffold_83 ensembl protein_coding_gene 30626 31915 . - . ID=Phyra83113;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000009;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 30626 31915 . - . ID=Phyra83113;Parent=Phyra83113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 30626 31915 . - 0 ID=Phyra83113;Parent=Phyra83113;rank=1 scaffold_83 . exon 30626 31915 . - . ID=Phyra83113.1;Parent=Phyra83113;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 33350 36178 . - . ID=Phyra83114;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000010;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 33350 36178 . - . ID=Phyra83114;Parent=Phyra83114;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 33350 36178 . - 0 ID=Phyra83114;Parent=Phyra83114;rank=1 scaffold_83 . exon 33350 36178 . - . ID=Phyra83114.1;Parent=Phyra83114;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 37722 38822 . - . ID=Phyra83115;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000011;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 37722 38822 . - . ID=Phyra83115;Parent=Phyra83115;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 37722 38822 . - 0 ID=Phyra83115;Parent=Phyra83115;rank=1 scaffold_83 . exon 37722 38822 . - . ID=Phyra83115.1;Parent=Phyra83115;constitutive=1;rank=1 scaffold_83 . biological_region 38742 38744 0.999 - . logic_name=eponine scaffold_83 . repeat_region 39039 39088 . ? . description=dust scaffold_83 . biological_region 39481 39484 0.999 + . logic_name=eponine scaffold_83 . biological_region 39844 39847 0.999 - . logic_name=eponine scaffold_83 . biological_region 41037 41040 0.999 + . logic_name=eponine scaffold_83 ensembl protein_coding_gene 39357 41195 . - . ID=Phyra83116;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000012;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 39357 41195 . - . ID=Phyra83116;Parent=Phyra83116;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 39357 40149 . - 0 ID=Phyra83116;Parent=Phyra83116;rank=3 scaffold_83 . exon 39357 40149 . - . ID=Phyra83116.3;Parent=Phyra83116;constitutive=1;ensembl_phase=2;rank=3 scaffold_83 . CDS 40235 41124 . - 0 ID=Phyra83116;Parent=Phyra83116;rank=2 scaffold_83 . exon 40235 41124 . - . ID=Phyra83116.2;Parent=Phyra83116;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_83 . CDS 41187 41195 . - 0 ID=Phyra83116;Parent=Phyra83116;rank=1 scaffold_83 . exon 41187 41195 . - . ID=Phyra83116.1;Parent=Phyra83116;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 41520 42520 . - . ID=Phyra83117;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000013;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 41520 42520 . - . ID=Phyra83117;Parent=Phyra83117;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 41520 41670 . - 0 ID=Phyra83117;Parent=Phyra83117;rank=3 scaffold_83 . exon 41520 41670 . - . ID=Phyra83117.3;Parent=Phyra83117;constitutive=1;ensembl_phase=2;rank=3 scaffold_83 . CDS 41738 41849 . - 0 ID=Phyra83117;Parent=Phyra83117;rank=2 scaffold_83 . exon 41738 41849 . - . ID=Phyra83117.2;Parent=Phyra83117;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_83 . CDS 41917 42520 . - 0 ID=Phyra83117;Parent=Phyra83117;rank=1 scaffold_83 . exon 41917 42520 . - . ID=Phyra83117.1;Parent=Phyra83117;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 ensembl protein_coding_gene 46321 47199 . + . ID=Phyra83118;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000014;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 46321 47199 . + . ID=Phyra83118;Parent=Phyra83118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 46321 47199 . + 0 ID=Phyra83118;Parent=Phyra83118;rank=1 scaffold_83 . exon 46321 47199 . + . ID=Phyra83118.1;Parent=Phyra83118;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 47322 47916 . - . ID=Phyra83119;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000015;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 47322 47916 . - . ID=Phyra83119;Parent=Phyra83119;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 47322 47520 . - 0 ID=Phyra83119;Parent=Phyra83119;rank=3 scaffold_83 . exon 47322 47520 . - . ID=Phyra83119.3;Parent=Phyra83119;constitutive=1;ensembl_phase=2;rank=3 scaffold_83 . CDS 47598 47675 . - 0 ID=Phyra83119;Parent=Phyra83119;rank=2 scaffold_83 . exon 47598 47675 . - . ID=Phyra83119.2;Parent=Phyra83119;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_83 . CDS 47747 47916 . - 0 ID=Phyra83119;Parent=Phyra83119;rank=1 scaffold_83 . exon 47747 47916 . - . ID=Phyra83119.1;Parent=Phyra83119;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 . repeat_region 52573 52809 . + . description=Polinton-1_PI scaffold_83 . repeat_region 55342 55373 . ? . description=trf scaffold_83 ensembl protein_coding_gene 48070 50202 . + . ID=Phyra83120;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000016;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 48070 50202 . + . ID=Phyra83120;Parent=Phyra83120;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 48070 50202 . + 0 ID=Phyra83120;Parent=Phyra83120;rank=1 scaffold_83 . exon 48070 50202 . + . ID=Phyra83120.1;Parent=Phyra83120;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 50527 51625 . + . ID=Phyra83121;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000017;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 50527 51625 . + . ID=Phyra83121;Parent=Phyra83121;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 50527 50685 . + 0 ID=Phyra83121;Parent=Phyra83121;rank=1 scaffold_83 . exon 50527 50685 . + . ID=Phyra83121.1;Parent=Phyra83121;constitutive=1;rank=1 scaffold_83 . CDS 50737 51358 . + 0 ID=Phyra83121;Parent=Phyra83121;rank=2 scaffold_83 . exon 50737 51358 . + . ID=Phyra83121.2;Parent=Phyra83121;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_83 . CDS 51471 51586 . + 0 ID=Phyra83121;Parent=Phyra83121;rank=3 scaffold_83 . exon 51471 51586 . + . ID=Phyra83121.3;Parent=Phyra83121;constitutive=1;ensembl_phase=1;rank=3 scaffold_83 . CDS 51617 51625 . + 0 ID=Phyra83121;Parent=Phyra83121;rank=4 scaffold_83 . exon 51617 51625 . + . ID=Phyra83121.4;Parent=Phyra83121;constitutive=1;rank=4 scaffold_83 ensembl protein_coding_gene 52639 53079 . + . ID=Phyra83122;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000018;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 52639 53079 . + . ID=Phyra83122;Parent=Phyra83122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 52639 53079 . + 0 ID=Phyra83122;Parent=Phyra83122;rank=1 scaffold_83 . exon 52639 53079 . + . ID=Phyra83122.1;Parent=Phyra83122;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 53878 54741 . - . ID=Phyra83123;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000019;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 53878 54741 . - . ID=Phyra83123;Parent=Phyra83123;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 53878 54741 . - 0 ID=Phyra83123;Parent=Phyra83123;rank=1 scaffold_83 . exon 53878 54741 . - . ID=Phyra83123.1;Parent=Phyra83123;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 55555 64384 . - . ID=Phyra96524;biotype=protein_coding;description=Cellulose synthase 3 [Source:UniProtKB/TrEMBL%3BAcc:A5A603];external_name=CES3;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 55555 64384 . - . ID=Phyra96524;Parent=Phyra96524;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 55555 56782 . - 0 ID=Phyra96524;Parent=Phyra96524;rank=9 scaffold_83 . exon 55555 56782 . - . ID=Phyra96524.9;Parent=Phyra96524;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_83 . CDS 56841 56911 . - 0 ID=Phyra96524;Parent=Phyra96524;rank=8 scaffold_83 . exon 56841 56911 . - . ID=Phyra96524.8;Parent=Phyra96524;constitutive=1;ensembl_phase=1;rank=8 scaffold_83 . CDS 57158 57844 . - 0 ID=Phyra96524;Parent=Phyra96524;rank=7 scaffold_83 . exon 57158 57844 . - . ID=Phyra96524.7;Parent=Phyra96524;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_83 . CDS 57881 57901 . - 0 ID=Phyra96524;Parent=Phyra96524;rank=6 scaffold_83 . CDS 57941 60276 . - 0 ID=Phyra96524;Parent=Phyra96524;rank=5 scaffold_83 . CDS 60336 60465 . - 0 ID=Phyra96524;Parent=Phyra96524;rank=4 scaffold_83 . CDS 60801 61662 . - 0 ID=Phyra96524;Parent=Phyra96524;rank=3 scaffold_83 . CDS 62218 64144 . - 0 ID=Phyra96524;Parent=Phyra96524;rank=2 scaffold_83 . CDS 64242 64384 . - 0 ID=Phyra96524;Parent=Phyra96524;rank=1 scaffold_83 . biological_region 57942 57943 0.999 + . logic_name=eponine scaffold_83 . biological_region 59780 59781 0.999 + . logic_name=eponine scaffold_83 . biological_region 61407 61409 0.999 + . logic_name=eponine scaffold_83 . repeat_region 61728 62178 . ? . description=dust scaffold_83 . biological_region 64332 64336 0.999 - . logic_name=eponine scaffold_83 . repeat_region 65101 65113 . ? . description=dust scaffold_83 . biological_region 65345 65345 0.999 - . logic_name=eponine scaffold_83 . biological_region 65346 65348 0.999 + . logic_name=eponine scaffold_83 . biological_region 66236 66238 0.999 + . logic_name=eponine scaffold_83 . biological_region 66314 66321 0.999 - . logic_name=eponine scaffold_83 ensembl protein_coding_gene 65967 67040 . + . ID=Phyra83126;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000022;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 65967 67040 . + . ID=Phyra83126;Parent=Phyra83126;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 65967 67040 . + 0 ID=Phyra83126;Parent=Phyra83126;rank=1 scaffold_83 . exon 65967 67040 . + . ID=Phyra83126.1;Parent=Phyra83126;constitutive=1;rank=1 scaffold_83 . exon 57881 57901 . - . ID=Phyra96524.6;Parent=Phyra96524;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_83 . exon 57941 60276 . - . ID=Phyra96524.5;Parent=Phyra96524;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_83 . exon 60336 60465 . - . ID=Phyra96524.4;Parent=Phyra96524;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_83 . exon 60801 61662 . - . ID=Phyra96524.3;Parent=Phyra96524;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_83 . exon 62218 64144 . - . ID=Phyra96524.2;Parent=Phyra96524;constitutive=1;ensembl_phase=2;rank=2 scaffold_83 . exon 64242 64384 . - . ID=Phyra96524.1;Parent=Phyra96524;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 . repeat_region 67528 67547 . ? . description=trf scaffold_83 . repeat_region 74127 74303 . ? . description=trf scaffold_83 ensembl protein_coding_gene 67125 72384 . - . ID=Phyra83127;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000023;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 67125 72384 . - . ID=Phyra83127;Parent=Phyra83127;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 67125 67283 . - 0 ID=Phyra83127;Parent=Phyra83127;rank=5 scaffold_83 . exon 67125 67283 . - . ID=Phyra83127.5;Parent=Phyra83127;constitutive=1;rank=5 scaffold_83 . CDS 67341 67481 . - 0 ID=Phyra83127;Parent=Phyra83127;rank=4 scaffold_83 . exon 67341 67481 . - . ID=Phyra83127.4;Parent=Phyra83127;constitutive=1;rank=4 scaffold_83 . CDS 67553 71022 . - 0 ID=Phyra83127;Parent=Phyra83127;rank=3 scaffold_83 . exon 67553 71022 . - . ID=Phyra83127.3;Parent=Phyra83127;constitutive=1;ensembl_phase=1;rank=3 scaffold_83 . CDS 71186 71222 . - 0 ID=Phyra83127;Parent=Phyra83127;rank=2 scaffold_83 . exon 71186 71222 . - . ID=Phyra83127.2;Parent=Phyra83127;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_83 . CDS 71299 72384 . - 0 ID=Phyra83127;Parent=Phyra83127;rank=1 scaffold_83 . exon 71299 72384 . - . ID=Phyra83127.1;Parent=Phyra83127;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 73262 74377 . - . ID=Phyra83128;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000024;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 73262 74377 . - . ID=Phyra83128;Parent=Phyra83128;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 73262 74377 . - 0 ID=Phyra83128;Parent=Phyra83128;rank=1 scaffold_83 . exon 73262 74377 . - . ID=Phyra83128.1;Parent=Phyra83128;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 74936 75421 . - . ID=Phyra83129;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000025;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 74936 75421 . - . ID=Phyra83129;Parent=Phyra83129;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 74936 75421 . - 0 ID=Phyra83129;Parent=Phyra83129;rank=1 scaffold_83 . exon 74936 75421 . - . ID=Phyra83129.1;Parent=Phyra83129;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 76129 77208 . + . ID=Phyra83130;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000026;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 76129 77208 . + . ID=Phyra83130;Parent=Phyra83130;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 76129 77208 . + 0 ID=Phyra83130;Parent=Phyra83130;rank=1 scaffold_83 . exon 76129 77208 . + . ID=Phyra83130.1;Parent=Phyra83130;constitutive=1;rank=1 scaffold_83 . biological_region 77346 77348 0.999 + . logic_name=eponine scaffold_83 . biological_region 77421 77423 0.999 - . logic_name=eponine scaffold_83 . biological_region 77575 77579 0.999 - . logic_name=eponine scaffold_83 . biological_region 78390 78394 0.999 - . logic_name=eponine scaffold_83 . biological_region 78638 78640 0.999 + . logic_name=eponine scaffold_83 . biological_region 78663 78667 0.999 + . logic_name=eponine scaffold_83 . biological_region 83137 83140 0.999 + . logic_name=eponine scaffold_83 . biological_region 83217 83219 0.999 + . logic_name=eponine scaffold_83 . biological_region 84669 84669 0.999 - . logic_name=eponine scaffold_83 . biological_region 85605 85606 0.999 + . logic_name=eponine scaffold_83 ensembl protein_coding_gene 77343 79244 . + . ID=Phyra83131;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000027;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 77343 79244 . + . ID=Phyra83131;Parent=Phyra83131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 77343 79244 . + 0 ID=Phyra83131;Parent=Phyra83131;rank=1 scaffold_83 . exon 77343 79244 . + . ID=Phyra83131.1;Parent=Phyra83131;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 79802 81018 . + . ID=Phyra83132;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000028;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 79802 81018 . + . ID=Phyra83132;Parent=Phyra83132;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 79802 80047 . + 0 ID=Phyra83132;Parent=Phyra83132;rank=1 scaffold_83 . exon 79802 80047 . + . ID=Phyra83132.1;Parent=Phyra83132;constitutive=1;rank=1 scaffold_83 . CDS 80118 80228 . + 0 ID=Phyra83132;Parent=Phyra83132;rank=2 scaffold_83 . exon 80118 80228 . + . ID=Phyra83132.2;Parent=Phyra83132;constitutive=1;rank=2 scaffold_83 . CDS 80305 81018 . + 0 ID=Phyra83132;Parent=Phyra83132;rank=3 scaffold_83 . exon 80305 81018 . + . ID=Phyra83132.3;Parent=Phyra83132;constitutive=1;rank=3 scaffold_83 ensembl protein_coding_gene 82201 83775 . + . ID=Phyra83133;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000029;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 82201 83775 . + . ID=Phyra83133;Parent=Phyra83133;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 82201 83775 . + 0 ID=Phyra83133;Parent=Phyra83133;rank=1 scaffold_83 . exon 82201 83775 . + . ID=Phyra83133.1;Parent=Phyra83133;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 84556 85765 . + . ID=Phyra83134;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000030;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 84556 85765 . + . ID=Phyra83134;Parent=Phyra83134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 84556 84801 . + 0 ID=Phyra83134;Parent=Phyra83134;rank=1 scaffold_83 . exon 84556 84801 . + . ID=Phyra83134.1;Parent=Phyra83134;constitutive=1;rank=1 scaffold_83 . CDS 84872 84982 . + 0 ID=Phyra83134;Parent=Phyra83134;rank=2 scaffold_83 . exon 84872 84982 . + . ID=Phyra83134.2;Parent=Phyra83134;constitutive=1;rank=2 scaffold_83 . CDS 85052 85765 . + 0 ID=Phyra83134;Parent=Phyra83134;rank=3 scaffold_83 . exon 85052 85765 . + . ID=Phyra83134.3;Parent=Phyra83134;constitutive=1;rank=3 scaffold_83 . repeat_region 86573 86596 . ? . description=trf scaffold_83 . repeat_region 86573 86596 . ? . description=dust scaffold_83 . repeat_region 87496 87551 . ? . description=dust scaffold_83 . repeat_region 87860 87906 . ? . description=trf scaffold_83 . repeat_region 87920 87939 . ? . description=trf scaffold_83 . repeat_region 87989 88149 . ? . description=trf scaffold_83 . repeat_region 89331 89424 . ? . description=trf scaffold_83 . repeat_region 91069 91077 . ? . description=dust scaffold_83 . repeat_region 95375 95424 . ? . description=dust scaffold_83 ensembl protein_coding_gene 86345 86923 . - . ID=Phyra83135;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000031;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 86345 86923 . - . ID=Phyra83135;Parent=Phyra83135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 86345 86923 . - 0 ID=Phyra83135;Parent=Phyra83135;rank=1 scaffold_83 . exon 86345 86923 . - . ID=Phyra83135.1;Parent=Phyra83135;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 87622 88506 . - . ID=Phyra83136;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000032;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 87622 88506 . - . ID=Phyra83136;Parent=Phyra83136;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 87622 88506 . - 0 ID=Phyra83136;Parent=Phyra83136;rank=1 scaffold_83 . exon 87622 88506 . - . ID=Phyra83136.1;Parent=Phyra83136;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 89053 90009 . - . ID=Phyra83137;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000033;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 89053 90009 . - . ID=Phyra83137;Parent=Phyra83137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 89053 90009 . - 0 ID=Phyra83137;Parent=Phyra83137;rank=1 scaffold_83 . exon 89053 90009 . - . ID=Phyra83137.1;Parent=Phyra83137;constitutive=1;rank=1 scaffold_83 . biological_region 96630 96634 0.999 - . logic_name=eponine scaffold_83 ensembl protein_coding_gene 104115 104843 . - . ID=Phyra72080;biotype=protein_coding;description=Cell 12A endoglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q30BY8];external_name=EGL12-B;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 104115 104843 . - . ID=Phyra72080;Parent=Phyra72080;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 104115 104843 . - 0 ID=Phyra72080;Parent=Phyra72080;rank=1 scaffold_83 . exon 104115 104843 . - . ID=Phyra72080.1;Parent=Phyra72080;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 101152 101934 . - . ID=Phyra83138;biotype=protein_coding;description=Cell 12A endoglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q30BY6];external_name=EGL12-D;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 101152 101934 . - . ID=Phyra83138;Parent=Phyra83138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 101152 101934 . - 0 ID=Phyra83138;Parent=Phyra83138;rank=1 scaffold_83 . exon 101152 101934 . - . ID=Phyra83138.1;Parent=Phyra83138;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 102997 103725 . - . ID=Phyra83139;biotype=protein_coding;description=Cell 12A endoglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q30BY7];external_name=EGL12-C;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 102997 103725 . - . ID=Phyra83139;Parent=Phyra83139;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 102997 103725 . - 0 ID=Phyra83139;Parent=Phyra83139;rank=1 scaffold_83 . exon 102997 103725 . - . ID=Phyra83139.1;Parent=Phyra83139;constitutive=1;rank=1 scaffold_83 . repeat_region 114509 114516 . ? . description=dust scaffold_83 . repeat_region 114589 114602 . ? . description=dust scaffold_83 . repeat_region 114705 114712 . ? . description=dust scaffold_83 ensembl protein_coding_gene 105600 106322 . - . ID=Phyra72081;biotype=protein_coding;description=Cell 12A endoglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q30BY9];external_name=EGL12-A;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 105600 106322 . - . ID=Phyra72081;Parent=Phyra72081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 105600 106322 . - 0 ID=Phyra72081;Parent=Phyra72081;rank=1 scaffold_83 . exon 105600 106322 . - . ID=Phyra72081.1;Parent=Phyra72081;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 106965 110088 . - . ID=Phyra83142;biotype=protein_coding;description=Cellulose synthase 4 [Source:UniProtKB/TrEMBL%3BAcc:A5A604];external_name=CES4;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 106965 110088 . - . ID=Phyra83142;Parent=Phyra83142;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 106965 109010 . - 0 ID=Phyra83142;Parent=Phyra83142;rank=2 scaffold_83 . exon 106965 109010 . - . ID=Phyra83142.2;Parent=Phyra83142;constitutive=1;rank=2 scaffold_83 . CDS 109075 110088 . - 0 ID=Phyra83142;Parent=Phyra83142;rank=1 scaffold_83 . exon 109075 110088 . - . ID=Phyra83142.1;Parent=Phyra83142;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 111132 111815 . + . ID=Phyra83143;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000039;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 111132 111815 . + . ID=Phyra83143;Parent=Phyra83143;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 111132 111815 . + 0 ID=Phyra83143;Parent=Phyra83143;rank=1 scaffold_83 . exon 111132 111815 . + . ID=Phyra83143.1;Parent=Phyra83143;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 112722 113417 . - . ID=Phyra83144;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000040;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 112722 113417 . - . ID=Phyra83144;Parent=Phyra83144;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 112722 113417 . - 0 ID=Phyra83144;Parent=Phyra83144;rank=1 scaffold_83 . exon 112722 113417 . - . ID=Phyra83144.1;Parent=Phyra83144;constitutive=1;rank=1 scaffold_83 . biological_region 123189 123193 0.999 + . logic_name=eponine scaffold_83 ensembl protein_coding_gene 115522 116820 . + . ID=Phyra83145;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000041;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 115522 116820 . + . ID=Phyra83145;Parent=Phyra83145;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 115522 116820 . + 0 ID=Phyra83145;Parent=Phyra83145;rank=1 scaffold_83 . exon 115522 116820 . + . ID=Phyra83145.1;Parent=Phyra83145;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 117086 117859 . + . ID=Phyra83146;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000042;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 117086 117859 . + . ID=Phyra83146;Parent=Phyra83146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 117086 117859 . + 0 ID=Phyra83146;Parent=Phyra83146;rank=1 scaffold_83 . exon 117086 117859 . + . ID=Phyra83146.1;Parent=Phyra83146;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 119270 119965 . + . ID=Phyra83147;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000043;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 119270 119965 . + . ID=Phyra83147;Parent=Phyra83147;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 119270 119965 . + 0 ID=Phyra83147;Parent=Phyra83147;rank=1 scaffold_83 . exon 119270 119965 . + . ID=Phyra83147.1;Parent=Phyra83147;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 120185 127339 . - . ID=Phyra83148;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000044;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 120185 127339 . - . ID=Phyra83148;Parent=Phyra83148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 120185 127339 . - 0 ID=Phyra83148;Parent=Phyra83148;rank=1 scaffold_83 . exon 120185 127339 . - . ID=Phyra83148.1;Parent=Phyra83148;constitutive=1;rank=1 scaffold_83 . repeat_region 129186 129231 . ? . description=trf scaffold_83 . repeat_region 131937 131970 . ? . description=trf scaffold_83 ensembl protein_coding_gene 133945 135774 . - . ID=Phyra83149;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000045;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 133945 135774 . - . ID=Phyra83149;Parent=Phyra83149;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 133945 135177 . - 0 ID=Phyra83149;Parent=Phyra83149;rank=3 scaffold_83 . exon 133945 135177 . - . ID=Phyra83149.3;Parent=Phyra83149;constitutive=1;rank=3 scaffold_83 . CDS 135240 135340 . - 0 ID=Phyra83149;Parent=Phyra83149;rank=2 scaffold_83 . CDS 135405 135774 . - 0 ID=Phyra83149;Parent=Phyra83149;rank=1 scaffold_83 . biological_region 135581 135581 0.999 - . logic_name=eponine scaffold_83 . biological_region 135584 135588 0.999 + . logic_name=eponine scaffold_83 . biological_region 135680 135685 0.999 - . logic_name=eponine scaffold_83 . biological_region 135717 135719 0.999 - . logic_name=eponine scaffold_83 . repeat_region 139300 139349 . ? . description=dust scaffold_83 ensembl protein_coding_gene 138066 138484 . + . ID=Phyra53729;biotype=protein_coding;external_name=gwEuk.83.34.1;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 138066 138484 . + . ID=Phyra53729;Parent=Phyra53729;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 138066 138113 . + 0 ID=Phyra53729;Parent=Phyra53729;rank=1 scaffold_83 . exon 138066 138113 . + . ID=Phyra53729.1;Parent=Phyra53729;constitutive=1;rank=1 scaffold_83 . CDS 138197 138324 . + 0 ID=Phyra53729;Parent=Phyra53729;rank=2 scaffold_83 . exon 138197 138324 . + . ID=Phyra53729.2;Parent=Phyra53729;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_83 . CDS 138397 138484 . + 0 ID=Phyra53729;Parent=Phyra53729;rank=3 scaffold_83 . exon 138397 138484 . + . ID=Phyra53729.3;Parent=Phyra53729;constitutive=1;ensembl_phase=2;rank=3 scaffold_83 ensembl protein_coding_gene 141135 141392 . - . ID=Phyra53730;biotype=protein_coding;external_name=gwEuk.83.35.1;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 141135 141392 . - . ID=Phyra53730;Parent=Phyra53730;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 141135 141392 . - 0 ID=Phyra53730;Parent=Phyra53730;rank=1 scaffold_83 . exon 141135 141392 . - . ID=Phyra53730.1;Parent=Phyra53730;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 136417 137241 . + . ID=Phyra72082;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_83000003;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 136417 137241 . + . ID=Phyra72082;Parent=Phyra72082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 136417 137241 . + 0 ID=Phyra72082;Parent=Phyra72082;rank=1 scaffold_83 . exon 136417 137241 . + . ID=Phyra72082.1;Parent=Phyra72082;constitutive=1;rank=1 scaffold_83 . exon 135240 135340 . - . ID=Phyra83149.2;Parent=Phyra83149;constitutive=1;ensembl_phase=1;rank=2 scaffold_83 . exon 135405 135774 . - . ID=Phyra83149.1;Parent=Phyra83149;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 ensembl protein_coding_gene 137355 137813 . - . ID=Phyra83151;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000047;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 137355 137813 . - . ID=Phyra83151;Parent=Phyra83151;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 137355 137498 . - 0 ID=Phyra83151;Parent=Phyra83151;rank=2 scaffold_83 . exon 137355 137498 . - . ID=Phyra83151.2;Parent=Phyra83151;constitutive=1;rank=2 scaffold_83 . CDS 137565 137813 . - 0 ID=Phyra83151;Parent=Phyra83151;rank=1 scaffold_83 . exon 137565 137813 . - . ID=Phyra83151.1;Parent=Phyra83151;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 140128 140977 . + . ID=Phyra83152;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000048;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 140128 140977 . + . ID=Phyra83152;Parent=Phyra83152;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 140128 140301 . + 0 ID=Phyra83152;Parent=Phyra83152;rank=1 scaffold_83 . exon 140128 140301 . + . ID=Phyra83152.1;Parent=Phyra83152;constitutive=1;rank=1 scaffold_83 . CDS 140398 140557 . + 0 ID=Phyra83152;Parent=Phyra83152;rank=2 scaffold_83 . exon 140398 140557 . + . ID=Phyra83152.2;Parent=Phyra83152;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_83 . CDS 140628 140764 . + 0 ID=Phyra83152;Parent=Phyra83152;rank=3 scaffold_83 . exon 140628 140764 . + . ID=Phyra83152.3;Parent=Phyra83152;constitutive=1;ensembl_phase=1;rank=3 scaffold_83 . CDS 140828 140977 . + 0 ID=Phyra83152;Parent=Phyra83152;rank=4 scaffold_83 . exon 140828 140977 . + . ID=Phyra83152.4;Parent=Phyra83152;constitutive=1;rank=4 scaffold_83 ensembl protein_coding_gene 141612 143726 . - . ID=Phyra83154;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000050;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 141612 143726 . - . ID=Phyra83154;Parent=Phyra83154;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 141612 143726 . - 0 ID=Phyra83154;Parent=Phyra83154;rank=1 scaffold_83 . exon 141612 143726 . - . ID=Phyra83154.1;Parent=Phyra83154;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 149958 152614 . + . ID=Phyra83155;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000051;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 149958 152614 . + . ID=Phyra83155;Parent=Phyra83155;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 149958 150608 . + 0 ID=Phyra83155;Parent=Phyra83155;rank=1 scaffold_83 . exon 149958 150608 . + . ID=Phyra83155.1;Parent=Phyra83155;constitutive=1;rank=1 scaffold_83 . CDS 150666 151243 . + 0 ID=Phyra83155;Parent=Phyra83155;rank=2 scaffold_83 . exon 150666 151243 . + . ID=Phyra83155.2;Parent=Phyra83155;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_83 . CDS 151323 151710 . + 0 ID=Phyra83155;Parent=Phyra83155;rank=3 scaffold_83 . exon 151323 151710 . + . ID=Phyra83155.3;Parent=Phyra83155;constitutive=1;ensembl_phase=2;rank=3 scaffold_83 . CDS 151782 152408 . + 0 ID=Phyra83155;Parent=Phyra83155;rank=4 scaffold_83 . exon 151782 152408 . + . ID=Phyra83155.4;Parent=Phyra83155;constitutive=1;rank=4 scaffold_83 . CDS 152492 152614 . + 0 ID=Phyra83155;Parent=Phyra83155;rank=5 scaffold_83 . exon 152492 152614 . + . ID=Phyra83155.5;Parent=Phyra83155;constitutive=1;rank=5 scaffold_83 . biological_region 154755 154758 0.999 + . logic_name=eponine scaffold_83 . biological_region 154881 154886 0.999 - . logic_name=eponine scaffold_83 . repeat_region 157086 157115 . ? . description=trf scaffold_83 . repeat_region 157090 157115 . ? . description=dust scaffold_83 . repeat_region 157706 157714 . ? . description=dust scaffold_83 ensembl protein_coding_gene 155919 157019 . + . ID=Phyra53735;biotype=protein_coding;external_name=gwEuk.83.40.1;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 155919 157019 . + . ID=Phyra53735;Parent=Phyra53735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 155919 157019 . + 0 ID=Phyra53735;Parent=Phyra53735;rank=1 scaffold_83 . exon 155919 157019 . + . ID=Phyra53735.1;Parent=Phyra53735;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 153855 155312 . + . ID=Phyra83156;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000052;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 153855 155312 . + . ID=Phyra83156;Parent=Phyra83156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 153855 155312 . + 0 ID=Phyra83156;Parent=Phyra83156;rank=1 scaffold_83 . exon 153855 155312 . + . ID=Phyra83156.1;Parent=Phyra83156;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 157728 160243 . + . ID=Phyra83158;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000054;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 157728 160243 . + . ID=Phyra83158;Parent=Phyra83158;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 157728 159557 . + 0 ID=Phyra83158;Parent=Phyra83158;rank=1 scaffold_83 . exon 157728 159557 . + . ID=Phyra83158.1;Parent=Phyra83158;constitutive=1;rank=1 scaffold_83 . CDS 159590 160243 . + 0 ID=Phyra83158;Parent=Phyra83158;rank=2 scaffold_83 . exon 159590 160243 . + . ID=Phyra83158.2;Parent=Phyra83158;constitutive=1;rank=2 scaffold_83 ensembl protein_coding_gene 160563 163124 . + . ID=Phyra83159;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000055;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 160563 163124 . + . ID=Phyra83159;Parent=Phyra83159;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 160563 163124 . + 0 ID=Phyra83159;Parent=Phyra83159;rank=1 scaffold_83 . exon 160563 163124 . + . ID=Phyra83159.1;Parent=Phyra83159;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 165968 169335 . + . ID=Phyra72083;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_83000004;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 165968 169335 . + . ID=Phyra72083;Parent=Phyra72083;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 165968 166179 . + 0 ID=Phyra72083;Parent=Phyra72083;rank=1 scaffold_83 . exon 165968 166179 . + . ID=Phyra72083.1;Parent=Phyra72083;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 . CDS 166256 166570 . + 0 ID=Phyra72083;Parent=Phyra72083;rank=2 scaffold_83 . exon 166256 166570 . + . ID=Phyra72083.2;Parent=Phyra72083;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_83 . CDS 166660 166771 . + 0 ID=Phyra72083;Parent=Phyra72083;rank=3 scaffold_83 . exon 166660 166771 . + . ID=Phyra72083.3;Parent=Phyra72083;constitutive=1;ensembl_phase=2;rank=3 scaffold_83 . CDS 166858 168314 . + 0 ID=Phyra72083;Parent=Phyra72083;rank=4 scaffold_83 . exon 166858 168314 . + . ID=Phyra72083.4;Parent=Phyra72083;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_83 . CDS 168346 168385 . + 0 ID=Phyra72083;Parent=Phyra72083;rank=5 scaffold_83 . exon 168346 168385 . + . ID=Phyra72083.5;Parent=Phyra72083;constitutive=1;ensembl_phase=2;rank=5 scaffold_83 . CDS 168409 169335 . + 0 ID=Phyra72083;Parent=Phyra72083;rank=6 scaffold_83 . exon 168409 169335 . + . ID=Phyra72083.6;Parent=Phyra72083;constitutive=1;rank=6 scaffold_83 ensembl protein_coding_gene 163971 165212 . + . ID=Phyra83160;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000056;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 163971 165212 . + . ID=Phyra83160;Parent=Phyra83160;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 163971 165212 . + 0 ID=Phyra83160;Parent=Phyra83160;rank=1 scaffold_83 . exon 163971 165212 . + . ID=Phyra83160.1;Parent=Phyra83160;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 170891 172306 . - . ID=Phyra83162;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000058;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 170891 172306 . - . ID=Phyra83162;Parent=Phyra83162;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 170891 172306 . - 0 ID=Phyra83162;Parent=Phyra83162;rank=1 scaffold_83 . exon 170891 172306 . - . ID=Phyra83162.1;Parent=Phyra83162;constitutive=1;rank=1 scaffold_83 . repeat_region 177850 177885 . ? . description=trf scaffold_83 . repeat_region 178077 178101 . ? . description=trf scaffold_83 . repeat_region 178077 178101 . ? . description=dust scaffold_83 . repeat_region 178367 178388 . ? . description=trf scaffold_83 . repeat_region 178367 178388 . ? . description=dust scaffold_83 . biological_region 178563 178564 0.999 + . logic_name=eponine scaffold_83 . biological_region 178609 178609 0.999 + . logic_name=eponine scaffold_83 . repeat_region 178632 178691 . ? . description=trf scaffold_83 . repeat_region 178633 178709 . ? . description=trf scaffold_83 ensembl protein_coding_gene 174404 176036 . - . ID=Phyra53744;biotype=protein_coding;external_name=gwEuk.83.49.1;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 174404 176036 . - . ID=Phyra53744;Parent=Phyra53744;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 174404 176036 . - 0 ID=Phyra53744;Parent=Phyra53744;rank=1 scaffold_83 . exon 174404 176036 . - . ID=Phyra53744.1;Parent=Phyra53744;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 ensembl protein_coding_gene 173378 173869 . + . ID=Phyra83163;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000059;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 173378 173869 . + . ID=Phyra83163;Parent=Phyra83163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 173378 173869 . + 0 ID=Phyra83163;Parent=Phyra83163;rank=1 scaffold_83 . exon 173378 173869 . + . ID=Phyra83163.1;Parent=Phyra83163;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 178320 180485 . - . ID=Phyra83165;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000061;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 178320 180485 . - . ID=Phyra83165;Parent=Phyra83165;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 178320 180485 . - 0 ID=Phyra83165;Parent=Phyra83165;rank=1 scaffold_83 . exon 178320 180485 . - . ID=Phyra83165.1;Parent=Phyra83165;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 183056 184641 . - . ID=Phyra72084;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_83000005;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 183056 184641 . - . ID=Phyra72084;Parent=Phyra72084;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 183056 184156 . - 0 ID=Phyra72084;Parent=Phyra72084;rank=2 scaffold_83 . exon 183056 184156 . - . ID=Phyra72084.2;Parent=Phyra72084;constitutive=1;rank=2 scaffold_83 . CDS 184180 184641 . - 0 ID=Phyra72084;Parent=Phyra72084;rank=1 scaffold_83 . exon 184180 184641 . - . ID=Phyra72084.1;Parent=Phyra72084;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 185903 187714 . - . ID=Phyra83167;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000063;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 185903 187714 . - . ID=Phyra83167;Parent=Phyra83167;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 185903 187714 . - 0 ID=Phyra83167;Parent=Phyra83167;rank=1 scaffold_83 . exon 185903 187714 . - . ID=Phyra83167.1;Parent=Phyra83167;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 189356 191569 . + . ID=Phyra83168;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000064;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 189356 191569 . + . ID=Phyra83168;Parent=Phyra83168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 189356 191569 . + 0 ID=Phyra83168;Parent=Phyra83168;rank=1 scaffold_83 . exon 189356 191569 . + . ID=Phyra83168.1;Parent=Phyra83168;constitutive=1;rank=1 scaffold_83 . repeat_region 193677 193705 . ? . description=trf scaffold_83 . repeat_region 195501 195552 . ? . description=trf scaffold_83 ensembl protein_coding_gene 193314 195641 . + . ID=Phyra83169;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000065;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 193314 195641 . + . ID=Phyra83169;Parent=Phyra83169;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 193314 195641 . + 0 ID=Phyra83169;Parent=Phyra83169;rank=1 scaffold_83 . exon 193314 195641 . + . ID=Phyra83169.1;Parent=Phyra83169;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 199281 200939 . + . ID=Phyra83171;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000067;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 199281 200939 . + . ID=Phyra83171;Parent=Phyra83171;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 199281 200939 . + 0 ID=Phyra83171;Parent=Phyra83171;rank=1 scaffold_83 . exon 199281 200939 . + . ID=Phyra83171.1;Parent=Phyra83171;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 195970 198527 . - . ID=Phyra96533;biotype=protein_coding;external_name=C_scaffold_83000012;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 195970 198527 . - . ID=Phyra96533;Parent=Phyra96533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 195970 195974 . - 0 ID=Phyra96533;Parent=Phyra96533;rank=5 scaffold_83 . exon 195970 195974 . - . ID=Phyra96533.5;Parent=Phyra96533;constitutive=1;ensembl_phase=1;rank=5 scaffold_83 . CDS 196025 196250 . - 0 ID=Phyra96533;Parent=Phyra96533;rank=4 scaffold_83 . exon 196025 196250 . - . ID=Phyra96533.4;Parent=Phyra96533;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_83 . CDS 196854 197293 . - 0 ID=Phyra96533;Parent=Phyra96533;rank=3 scaffold_83 . exon 196854 197293 . - . ID=Phyra96533.3;Parent=Phyra96533;constitutive=1;ensembl_phase=1;rank=3 scaffold_83 . CDS 197423 197812 . - 0 ID=Phyra96533;Parent=Phyra96533;rank=2 scaffold_83 . exon 197423 197812 . - . ID=Phyra96533.2;Parent=Phyra96533;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_83 . CDS 198314 198527 . - 0 ID=Phyra96533;Parent=Phyra96533;rank=1 scaffold_83 . exon 198314 198527 . - . ID=Phyra96533.1;Parent=Phyra96533;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 . repeat_region 204198 204211 . ? . description=dust scaffold_83 ensembl protein_coding_gene 202146 203798 . + . ID=Phyra83172;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000068;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 202146 203798 . + . ID=Phyra83172;Parent=Phyra83172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 202146 203798 . + 0 ID=Phyra83172;Parent=Phyra83172;rank=1 scaffold_83 . exon 202146 203798 . + . ID=Phyra83172.1;Parent=Phyra83172;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 204765 206399 . + . ID=Phyra83173;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000069;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 204765 206399 . + . ID=Phyra83173;Parent=Phyra83173;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 204765 206399 . + 0 ID=Phyra83173;Parent=Phyra83173;rank=1 scaffold_83 . exon 204765 206399 . + . ID=Phyra83173.1;Parent=Phyra83173;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 206648 208981 . - . ID=Phyra83174;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_83000070;logic_name=jgi_phyra1 scaffold_83 ensembl transcript 206648 208981 . - . ID=Phyra83174;Parent=Phyra83174;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_83 . CDS 206648 208981 . - 0 ID=Phyra83174;Parent=Phyra83174;rank=1 scaffold_83 . exon 206648 208981 . - . ID=Phyra83174.1;Parent=Phyra83174;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_78 1 211270 scaffold_78 . repeat_region 1418 5338 . ? . description=dust scaffold_78 . repeat_region 6224 6273 . ? . description=dust scaffold_78 . repeat_region 6715 6757 . ? . description=trf scaffold_78 . repeat_region 7054 7090 . ? . description=trf scaffold_78 . repeat_region 7055 7103 . ? . description=dust scaffold_78 . biological_region 19146 19147 0.999 + . logic_name=eponine scaffold_78 ensembl protein_coding_gene 15466 17434 . + . ID=Phyra82806;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000001;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 15466 17434 . + . ID=Phyra82806;Parent=Phyra82806;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 15466 15501 . + 0 ID=Phyra82806;Parent=Phyra82806;rank=1 scaffold_78 . exon 15466 15501 . + . ID=Phyra82806.1;Parent=Phyra82806;constitutive=1;rank=1 scaffold_78 . CDS 15609 16047 . + 0 ID=Phyra82806;Parent=Phyra82806;rank=2 scaffold_78 . exon 15609 16047 . + . ID=Phyra82806.2;Parent=Phyra82806;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_78 . CDS 16101 17434 . + 0 ID=Phyra82806;Parent=Phyra82806;rank=3 scaffold_78 . exon 16101 17434 . + . ID=Phyra82806.3;Parent=Phyra82806;constitutive=1;ensembl_phase=1;rank=3 scaffold_78 . repeat_region 23718 23767 . ? . description=dust scaffold_78 . repeat_region 27072 27121 . ? . description=dust scaffold_78 ensembl protein_coding_gene 22020 22244 . + . ID=Phyra53084;biotype=protein_coding;external_name=gwEuk.78.1.1;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 22020 22244 . + . ID=Phyra53084;Parent=Phyra53084;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 22020 22244 . + 0 ID=Phyra53084;Parent=Phyra53084;rank=1 scaffold_78 . exon 22020 22244 . + . ID=Phyra53084.1;Parent=Phyra53084;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 22917 23898 . - . ID=Phyra82807;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000002;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 22917 23898 . - . ID=Phyra82807;Parent=Phyra82807;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 22917 23656 . - 0 ID=Phyra82807;Parent=Phyra82807;rank=2 scaffold_78 . exon 22917 23656 . - . ID=Phyra82807.2;Parent=Phyra82807;constitutive=1;ensembl_phase=1;rank=2 scaffold_78 . CDS 23772 23898 . - 0 ID=Phyra82807;Parent=Phyra82807;rank=1 scaffold_78 . exon 23772 23898 . - . ID=Phyra82807.1;Parent=Phyra82807;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 ensembl protein_coding_gene 24748 28191 . - . ID=Phyra82808;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000003;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 24748 28191 . - . ID=Phyra82808;Parent=Phyra82808;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 24748 25119 . - 0 ID=Phyra82808;Parent=Phyra82808;rank=5 scaffold_78 . exon 24748 25119 . - . ID=Phyra82808.5;Parent=Phyra82808;constitutive=1;rank=5 scaffold_78 . CDS 25194 25973 . - 0 ID=Phyra82808;Parent=Phyra82808;rank=4 scaffold_78 . exon 25194 25973 . - . ID=Phyra82808.4;Parent=Phyra82808;constitutive=1;rank=4 scaffold_78 . CDS 26055 26941 . - 0 ID=Phyra82808;Parent=Phyra82808;rank=3 scaffold_78 . exon 26055 26941 . - . ID=Phyra82808.3;Parent=Phyra82808;constitutive=1;ensembl_phase=1;rank=3 scaffold_78 . CDS 27133 28026 . - 0 ID=Phyra82808;Parent=Phyra82808;rank=2 scaffold_78 . exon 27133 28026 . - . ID=Phyra82808.2;Parent=Phyra82808;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_78 . CDS 28092 28191 . - 0 ID=Phyra82808;Parent=Phyra82808;rank=1 scaffold_78 . exon 28092 28191 . - . ID=Phyra82808.1;Parent=Phyra82808;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 ensembl protein_coding_gene 20869 21667 . + . ID=Phyra96442;biotype=protein_coding;external_name=C_scaffold_78000001;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 20869 21667 . + . ID=Phyra96442;Parent=Phyra96442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 20869 20929 . + 0 ID=Phyra96442;Parent=Phyra96442;rank=1 scaffold_78 . exon 20869 20929 . + . ID=Phyra96442.1;Parent=Phyra96442;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 . CDS 21013 21501 . + 0 ID=Phyra96442;Parent=Phyra96442;rank=2 scaffold_78 . exon 21013 21501 . + . ID=Phyra96442.2;Parent=Phyra96442;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_78 . CDS 21591 21667 . + 0 ID=Phyra96442;Parent=Phyra96442;rank=3 scaffold_78 . exon 21591 21667 . + . ID=Phyra96442.3;Parent=Phyra96442;constitutive=1;ensembl_phase=1;rank=3 scaffold_78 . biological_region 33056 33059 0.999 - . logic_name=eponine scaffold_78 . biological_region 34332 34334 0.999 - . logic_name=eponine scaffold_78 ensembl protein_coding_gene 29407 31056 . - . ID=Phyra82809;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000004;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 29407 31056 . - . ID=Phyra82809;Parent=Phyra82809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 29407 31056 . - 0 ID=Phyra82809;Parent=Phyra82809;rank=1 scaffold_78 . exon 29407 31056 . - . ID=Phyra82809.1;Parent=Phyra82809;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 34183 35245 . + . ID=Phyra82810;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000005;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 34183 35245 . + . ID=Phyra82810;Parent=Phyra82810;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 34183 35030 . + 0 ID=Phyra82810;Parent=Phyra82810;rank=1 scaffold_78 . exon 34183 35030 . + . ID=Phyra82810.1;Parent=Phyra82810;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_78 . CDS 35131 35245 . + 0 ID=Phyra82810;Parent=Phyra82810;rank=2 scaffold_78 . exon 35131 35245 . + . ID=Phyra82810.2;Parent=Phyra82810;constitutive=1;ensembl_phase=2;rank=2 scaffold_78 ensembl protein_coding_gene 37259 39888 . - . ID=Phyra82811;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000006;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 37259 39888 . - . ID=Phyra82811;Parent=Phyra82811;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 37259 39782 . - 0 ID=Phyra82811;Parent=Phyra82811;rank=2 scaffold_78 . exon 37259 39782 . - . ID=Phyra82811.2;Parent=Phyra82811;constitutive=1;ensembl_phase=2;rank=2 scaffold_78 . CDS 39872 39888 . - 0 ID=Phyra82811;Parent=Phyra82811;rank=1 scaffold_78 . repeat_region 40479 40515 . ? . description=trf scaffold_78 . repeat_region 40479 40515 . ? . description=dust scaffold_78 . repeat_region 43655 43684 . ? . description=trf scaffold_78 . repeat_region 47282 47330 . ? . description=dust scaffold_78 ensembl protein_coding_gene 47773 50172 . - . ID=Phyra53096;biotype=protein_coding;external_name=gwEuk.78.13.1;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 47773 50172 . - . ID=Phyra53096;Parent=Phyra53096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 47773 50172 . - 0 ID=Phyra53096;Parent=Phyra53096;rank=1 scaffold_78 . exon 47773 50172 . - . ID=Phyra53096.1;Parent=Phyra53096;constitutive=1;rank=1 scaffold_78 . exon 39872 39888 . - . ID=Phyra82811.1;Parent=Phyra82811;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_78 ensembl protein_coding_gene 40089 41051 . + . ID=Phyra82812;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000007;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 40089 41051 . + . ID=Phyra82812;Parent=Phyra82812;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 40089 40243 . + 0 ID=Phyra82812;Parent=Phyra82812;rank=1 scaffold_78 . exon 40089 40243 . + . ID=Phyra82812.1;Parent=Phyra82812;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_78 . CDS 40304 41051 . + 0 ID=Phyra82812;Parent=Phyra82812;rank=2 scaffold_78 . exon 40304 41051 . + . ID=Phyra82812.2;Parent=Phyra82812;constitutive=1;ensembl_phase=2;rank=2 scaffold_78 ensembl protein_coding_gene 41216 47338 . - . ID=Phyra82813;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000008;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 41216 47338 . - . ID=Phyra82813;Parent=Phyra82813;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 41216 47338 . - 0 ID=Phyra82813;Parent=Phyra82813;rank=1 scaffold_78 . exon 41216 47338 . - . ID=Phyra82813.1;Parent=Phyra82813;constitutive=1;rank=1 scaffold_78 . biological_region 49930 49932 0.999 - . logic_name=eponine scaffold_78 . biological_region 53740 53740 0.999 - . logic_name=eponine scaffold_78 ensembl protein_coding_gene 53977 55882 . + . ID=Phyra82817;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000012;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 53977 55882 . + . ID=Phyra82817;Parent=Phyra82817;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 53977 54027 . + 0 ID=Phyra82817;Parent=Phyra82817;rank=1 scaffold_78 . exon 53977 54027 . + . ID=Phyra82817.1;Parent=Phyra82817;constitutive=1;rank=1 scaffold_78 . CDS 54138 54243 . + 0 ID=Phyra82817;Parent=Phyra82817;rank=2 scaffold_78 . exon 54138 54243 . + . ID=Phyra82817.2;Parent=Phyra82817;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_78 . CDS 54373 54511 . + 0 ID=Phyra82817;Parent=Phyra82817;rank=3 scaffold_78 . exon 54373 54511 . + . ID=Phyra82817.3;Parent=Phyra82817;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_78 . CDS 54587 54695 . + 0 ID=Phyra82817;Parent=Phyra82817;rank=4 scaffold_78 . exon 54587 54695 . + . ID=Phyra82817.4;Parent=Phyra82817;constitutive=1;ensembl_phase=2;rank=4 scaffold_78 . CDS 54776 55882 . + 0 ID=Phyra82817;Parent=Phyra82817;rank=5 scaffold_78 . exon 54776 55882 . + . ID=Phyra82817.5;Parent=Phyra82817;constitutive=1;rank=5 scaffold_78 ensembl protein_coding_gene 56513 56953 . + . ID=Phyra82818;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000013;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 56513 56953 . + . ID=Phyra82818;Parent=Phyra82818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 56513 56953 . + 0 ID=Phyra82818;Parent=Phyra82818;rank=1 scaffold_78 . exon 56513 56953 . + . ID=Phyra82818.1;Parent=Phyra82818;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 57176 58172 . - . ID=Phyra82819;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000014;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 57176 58172 . - . ID=Phyra82819;Parent=Phyra82819;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 57176 57919 . - 0 ID=Phyra82819;Parent=Phyra82819;rank=2 scaffold_78 . exon 57176 57919 . - . ID=Phyra82819.2;Parent=Phyra82819;constitutive=1;rank=2 scaffold_78 . CDS 57984 58172 . - 0 ID=Phyra82819;Parent=Phyra82819;rank=1 scaffold_78 ensembl protein_coding_gene 50839 53652 . - . ID=Phyra96448;biotype=protein_coding;external_name=C_scaffold_78000007;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 50839 53652 . - . ID=Phyra96448;Parent=Phyra96448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 50839 50924 . - 0 ID=Phyra96448;Parent=Phyra96448;rank=9 scaffold_78 . exon 50839 50924 . - . ID=Phyra96448.9;Parent=Phyra96448;constitutive=1;ensembl_phase=1;rank=9 scaffold_78 . CDS 50988 51102 . - 0 ID=Phyra96448;Parent=Phyra96448;rank=8 scaffold_78 . exon 50988 51102 . - . ID=Phyra96448.8;Parent=Phyra96448;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_78 . CDS 51185 51303 . - 0 ID=Phyra96448;Parent=Phyra96448;rank=7 scaffold_78 . exon 51185 51303 . - . ID=Phyra96448.7;Parent=Phyra96448;constitutive=1;ensembl_phase=1;rank=7 scaffold_78 . CDS 51372 51421 . - 0 ID=Phyra96448;Parent=Phyra96448;rank=6 scaffold_78 . exon 51372 51421 . - . ID=Phyra96448.6;Parent=Phyra96448;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_78 . CDS 51495 51896 . - 0 ID=Phyra96448;Parent=Phyra96448;rank=5 scaffold_78 . exon 51495 51896 . - . ID=Phyra96448.5;Parent=Phyra96448;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_78 . CDS 52177 52342 . - 0 ID=Phyra96448;Parent=Phyra96448;rank=4 scaffold_78 . exon 52177 52342 . - . ID=Phyra96448.4;Parent=Phyra96448;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_78 . CDS 52364 52557 . - 0 ID=Phyra96448;Parent=Phyra96448;rank=3 scaffold_78 . exon 52364 52557 . - . ID=Phyra96448.3;Parent=Phyra96448;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_78 . CDS 52622 52671 . - 0 ID=Phyra96448;Parent=Phyra96448;rank=2 scaffold_78 . exon 52622 52671 . - . ID=Phyra96448.2;Parent=Phyra96448;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_78 . CDS 52699 53652 . - 0 ID=Phyra96448;Parent=Phyra96448;rank=1 scaffold_78 . exon 52699 53652 . - . ID=Phyra96448.1;Parent=Phyra96448;constitutive=1;rank=1 scaffold_78 . repeat_region 59465 59483 . ? . description=dust scaffold_78 . repeat_region 59854 59888 . ? . description=trf scaffold_78 . repeat_region 59976 60038 . ? . description=trf scaffold_78 . repeat_region 59977 60035 . ? . description=trf scaffold_78 . repeat_region 60751 60782 . ? . description=trf scaffold_78 . exon 57984 58172 . - . ID=Phyra82819.1;Parent=Phyra82819;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 58789 59412 . + . ID=Phyra82820;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000015;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 58789 59412 . + . ID=Phyra82820;Parent=Phyra82820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 58789 59412 . + 0 ID=Phyra82820;Parent=Phyra82820;rank=1 scaffold_78 . exon 58789 59412 . + . ID=Phyra82820.1;Parent=Phyra82820;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 59811 60251 . - . ID=Phyra82821;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000016;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 59811 60251 . - . ID=Phyra82821;Parent=Phyra82821;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 59811 60251 . - 0 ID=Phyra82821;Parent=Phyra82821;rank=1 scaffold_78 . exon 59811 60251 . - . ID=Phyra82821.1;Parent=Phyra82821;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 60801 63059 . - . ID=Phyra82822;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000017;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 60801 63059 . - . ID=Phyra82822;Parent=Phyra82822;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 60801 61544 . - 0 ID=Phyra82822;Parent=Phyra82822;rank=2 scaffold_78 . exon 60801 61544 . - . ID=Phyra82822.2;Parent=Phyra82822;constitutive=1;rank=2 scaffold_78 . CDS 61572 63059 . - 0 ID=Phyra82822;Parent=Phyra82822;rank=1 scaffold_78 . exon 61572 63059 . - . ID=Phyra82822.1;Parent=Phyra82822;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 64353 70217 . - . ID=Phyra96452;biotype=protein_coding;external_name=C_scaffold_78000011;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 64353 70217 . - . ID=Phyra96452;Parent=Phyra96452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 64353 64606 . - 0 ID=Phyra96452;Parent=Phyra96452;rank=16 scaffold_78 . exon 64353 64606 . - . ID=Phyra96452.16;Parent=Phyra96452;constitutive=1;ensembl_phase=1;rank=16 scaffold_78 . CDS 64628 64942 . - 0 ID=Phyra96452;Parent=Phyra96452;rank=15 scaffold_78 . exon 64628 64942 . - . ID=Phyra96452.15;Parent=Phyra96452;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=15 scaffold_78 . CDS 64991 65245 . - 0 ID=Phyra96452;Parent=Phyra96452;rank=14 scaffold_78 . exon 64991 65245 . - . ID=Phyra96452.14;Parent=Phyra96452;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_78 . CDS 65369 65420 . - 0 ID=Phyra96452;Parent=Phyra96452;rank=13 scaffold_78 . exon 65369 65420 . - . ID=Phyra96452.13;Parent=Phyra96452;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_78 . CDS 66249 66416 . - 0 ID=Phyra96452;Parent=Phyra96452;rank=12 scaffold_78 . exon 66249 66416 . - . ID=Phyra96452.12;Parent=Phyra96452;constitutive=1;rank=12 scaffold_78 . CDS 66486 66923 . - 0 ID=Phyra96452;Parent=Phyra96452;rank=11 scaffold_78 . exon 66486 66923 . - . ID=Phyra96452.11;Parent=Phyra96452;constitutive=1;rank=11 scaffold_78 . CDS 67128 67432 . - 0 ID=Phyra96452;Parent=Phyra96452;rank=10 scaffold_78 . exon 67128 67432 . - . ID=Phyra96452.10;Parent=Phyra96452;constitutive=1;ensembl_phase=1;rank=10 scaffold_78 . CDS 67769 67891 . - 0 ID=Phyra96452;Parent=Phyra96452;rank=9 scaffold_78 . CDS 67928 68152 . - 0 ID=Phyra96452;Parent=Phyra96452;rank=8 scaffold_78 . CDS 68543 68708 . - 0 ID=Phyra96452;Parent=Phyra96452;rank=7 scaffold_78 . CDS 68799 68857 . - 0 ID=Phyra96452;Parent=Phyra96452;rank=6 scaffold_78 . CDS 68927 69170 . - 0 ID=Phyra96452;Parent=Phyra96452;rank=5 scaffold_78 . CDS 69201 69371 . - 0 ID=Phyra96452;Parent=Phyra96452;rank=4 scaffold_78 . CDS 69507 69668 . - 0 ID=Phyra96452;Parent=Phyra96452;rank=3 scaffold_78 . CDS 69693 69877 . - 0 ID=Phyra96452;Parent=Phyra96452;rank=2 scaffold_78 . CDS 69932 70217 . - 0 ID=Phyra96452;Parent=Phyra96452;rank=1 scaffold_78 . biological_region 73532 73535 0.999 + . logic_name=eponine scaffold_78 . biological_region 74837 74837 0.999 + . logic_name=eponine scaffold_78 . biological_region 74890 74893 0.999 + . logic_name=eponine scaffold_78 . biological_region 75033 75034 0.999 - . logic_name=eponine scaffold_78 ensembl protein_coding_gene 75815 77521 . + . ID=Phyra82827;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000022;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 75815 77521 . + . ID=Phyra82827;Parent=Phyra82827;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 75815 77521 . + 0 ID=Phyra82827;Parent=Phyra82827;rank=1 scaffold_78 . exon 75815 77521 . + . ID=Phyra82827.1;Parent=Phyra82827;constitutive=1;rank=1 scaffold_78 . exon 67769 67891 . - . ID=Phyra96452.9;Parent=Phyra96452;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_78 . exon 67928 68152 . - . ID=Phyra96452.8;Parent=Phyra96452;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_78 . exon 68543 68708 . - . ID=Phyra96452.7;Parent=Phyra96452;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_78 . exon 68799 68857 . - . ID=Phyra96452.6;Parent=Phyra96452;constitutive=1;ensembl_phase=1;rank=6 scaffold_78 . exon 68927 69170 . - . ID=Phyra96452.5;Parent=Phyra96452;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_78 . exon 69201 69371 . - . ID=Phyra96452.4;Parent=Phyra96452;constitutive=1;rank=4 scaffold_78 . exon 69507 69668 . - . ID=Phyra96452.3;Parent=Phyra96452;constitutive=1;rank=3 scaffold_78 . exon 69693 69877 . - . ID=Phyra96452.2;Parent=Phyra96452;constitutive=1;ensembl_phase=1;rank=2 scaffold_78 . exon 69932 70217 . - . ID=Phyra96452.1;Parent=Phyra96452;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 ensembl protein_coding_gene 70448 72177 . - . ID=Phyra96453;biotype=protein_coding;external_name=C_scaffold_78000012;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 70448 72177 . - . ID=Phyra96453;Parent=Phyra96453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 70448 71538 . - 0 ID=Phyra96453;Parent=Phyra96453;rank=3 scaffold_78 . exon 70448 71538 . - . ID=Phyra96453.3;Parent=Phyra96453;constitutive=1;ensembl_phase=1;rank=3 scaffold_78 . CDS 71607 72020 . - 0 ID=Phyra96453;Parent=Phyra96453;rank=2 scaffold_78 . exon 71607 72020 . - . ID=Phyra96453.2;Parent=Phyra96453;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_78 . CDS 72153 72177 . - 0 ID=Phyra96453;Parent=Phyra96453;rank=1 scaffold_78 . exon 72153 72177 . - . ID=Phyra96453.1;Parent=Phyra96453;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 ensembl protein_coding_gene 73375 75087 . - . ID=Phyra96454;biotype=protein_coding;external_name=C_scaffold_78000013;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 73375 75087 . - . ID=Phyra96454;Parent=Phyra96454;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 73375 74498 . - 0 ID=Phyra96454;Parent=Phyra96454;rank=2 scaffold_78 . exon 73375 74498 . - . ID=Phyra96454.2;Parent=Phyra96454;constitutive=1;ensembl_phase=1;rank=2 scaffold_78 . CDS 74586 75087 . - 0 ID=Phyra96454;Parent=Phyra96454;rank=1 scaffold_78 . exon 74586 75087 . - . ID=Phyra96454.1;Parent=Phyra96454;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 ensembl protein_coding_gene 77718 78957 . - . ID=Phyra82828;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000023;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 77718 78957 . - . ID=Phyra82828;Parent=Phyra82828;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 77718 78784 . - 0 ID=Phyra82828;Parent=Phyra82828;rank=2 scaffold_78 . exon 77718 78784 . - . ID=Phyra82828.2;Parent=Phyra82828;constitutive=1;ensembl_phase=1;rank=2 scaffold_78 . CDS 78819 78957 . - 0 ID=Phyra82828;Parent=Phyra82828;rank=1 scaffold_78 . exon 78819 78957 . - . ID=Phyra82828.1;Parent=Phyra82828;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 ensembl protein_coding_gene 79478 81076 . + . ID=Phyra82829;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000024;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 79478 81076 . + . ID=Phyra82829;Parent=Phyra82829;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 79478 79973 . + 0 ID=Phyra82829;Parent=Phyra82829;rank=1 scaffold_78 . exon 79478 79973 . + . ID=Phyra82829.1;Parent=Phyra82829;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 . CDS 80034 81076 . + 0 ID=Phyra82829;Parent=Phyra82829;rank=2 scaffold_78 . exon 80034 81076 . + . ID=Phyra82829.2;Parent=Phyra82829;constitutive=1;ensembl_phase=1;rank=2 scaffold_78 ensembl protein_coding_gene 82038 83051 . + . ID=Phyra82830;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000025;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 82038 83051 . + . ID=Phyra82830;Parent=Phyra82830;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 82038 83051 . + 0 ID=Phyra82830;Parent=Phyra82830;rank=1 scaffold_78 . exon 82038 83051 . + . ID=Phyra82830.1;Parent=Phyra82830;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 83369 85006 . + . ID=Phyra82831;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000026;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 83369 85006 . + . ID=Phyra82831;Parent=Phyra82831;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 83369 83888 . + 0 ID=Phyra82831;Parent=Phyra82831;rank=1 scaffold_78 . exon 83369 83888 . + . ID=Phyra82831.1;Parent=Phyra82831;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 . CDS 83964 85006 . + 0 ID=Phyra82831;Parent=Phyra82831;rank=2 scaffold_78 . exon 83964 85006 . + . ID=Phyra82831.2;Parent=Phyra82831;constitutive=1;ensembl_phase=1;rank=2 scaffold_78 . biological_region 87484 87486 0.999 - . logic_name=eponine scaffold_78 . repeat_region 89839 90049 . + . description=GypsyPi-1c_LTR scaffold_78 . repeat_region 90050 91318 . + . description=GypsyPi-1c_I-int scaffold_78 . biological_region 90562 90566 0.999 + . logic_name=eponine scaffold_78 . biological_region 90985 90986 0.999 + . logic_name=eponine scaffold_78 . repeat_region 91115 91122 . ? . description=dust scaffold_78 . repeat_region 91348 91631 . + . description=GypsyPi-1c_I-int scaffold_78 . repeat_region 91894 92023 . + . description=GypsyPi-1c_I-int scaffold_78 . repeat_region 94711 94724 . ? . description=dust scaffold_78 ensembl protein_coding_gene 87148 89271 . + . ID=Phyra82832;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000027;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 87148 89271 . + . ID=Phyra82832;Parent=Phyra82832;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 87148 89271 . + 0 ID=Phyra82832;Parent=Phyra82832;rank=1 scaffold_78 . exon 87148 89271 . + . ID=Phyra82832.1;Parent=Phyra82832;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 90137 90766 . + . ID=Phyra82833;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000028;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 90137 90766 . + . ID=Phyra82833;Parent=Phyra82833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 90137 90766 . + 0 ID=Phyra82833;Parent=Phyra82833;rank=1 scaffold_78 . exon 90137 90766 . + . ID=Phyra82833.1;Parent=Phyra82833;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 95272 96739 . + . ID=Phyra82834;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000029;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 95272 96739 . + . ID=Phyra82834;Parent=Phyra82834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 95272 95616 . + 0 ID=Phyra82834;Parent=Phyra82834;rank=1 scaffold_78 . exon 95272 95616 . + . ID=Phyra82834.1;Parent=Phyra82834;constitutive=1;rank=1 scaffold_78 . CDS 95688 95926 . + 0 ID=Phyra82834;Parent=Phyra82834;rank=2 scaffold_78 . exon 95688 95926 . + . ID=Phyra82834.2;Parent=Phyra82834;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_78 . CDS 95986 96156 . + 0 ID=Phyra82834;Parent=Phyra82834;rank=3 scaffold_78 . exon 95986 96156 . + . ID=Phyra82834.3;Parent=Phyra82834;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_78 . CDS 96250 96739 . + 0 ID=Phyra82834;Parent=Phyra82834;rank=4 scaffold_78 ensembl tRNA_gene 104637 104709 . + . ID=EPrPRAG00000000044;biotype=tRNA;description=tRNA-Arg for anticodon CCU [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_78 ensembl transcript 104637 104709 . + . ID=EPrPRAT00000000044;Parent=EPrPRAG00000000044;biotype=tRNA;logic_name=ncrna_eg scaffold_78 . exon 104637 104709 . + . ID=EPrPRAE00000000044;Parent=EPrPRAT00000000044;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 . exon 96250 96739 . + . ID=Phyra82834.4;Parent=Phyra82834;constitutive=1;ensembl_phase=2;rank=4 scaffold_78 ensembl protein_coding_gene 100231 101658 . - . ID=Phyra82835;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000030;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 100231 101658 . - . ID=Phyra82835;Parent=Phyra82835;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 100231 101658 . - 0 ID=Phyra82835;Parent=Phyra82835;rank=1 scaffold_78 . exon 100231 101658 . - . ID=Phyra82835.1;Parent=Phyra82835;constitutive=1;rank=1 scaffold_78 . biological_region 106151 106153 0.999 + . logic_name=eponine scaffold_78 . repeat_region 106368 106544 . + . description=(TGAG)n scaffold_78 . repeat_region 106372 106558 . ? . description=dust scaffold_78 . repeat_region 106379 106471 . ? . description=trf scaffold_78 . repeat_region 106381 106471 . ? . description=trf scaffold_78 . repeat_region 106381 106471 . ? . description=trf scaffold_78 . repeat_region 106840 106848 . ? . description=dust scaffold_78 . biological_region 108545 108549 0.999 - . logic_name=eponine scaffold_78 . biological_region 110248 110254 0.999 + . logic_name=eponine scaffold_78 . biological_region 112298 112300 0.999 - . logic_name=eponine scaffold_78 . biological_region 112391 112392 0.999 + . logic_name=eponine scaffold_78 . biological_region 112482 112485 0.999 - . logic_name=eponine scaffold_78 . repeat_region 113191 117297 . ? . description=dust scaffold_78 ensembl tRNA_gene 108710 108782 . - . ID=EPrPRAG00000000165;biotype=tRNA;description=tRNA-Arg for anticodon CCU [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_78 ensembl transcript 108710 108782 . - . ID=EPrPRAT00000000165;Parent=EPrPRAG00000000165;biotype=tRNA;logic_name=ncrna_eg scaffold_78 . exon 108710 108782 . - . ID=EPrPRAE00000000165;Parent=EPrPRAT00000000165;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 ensembl protein_coding_gene 109885 110837 . + . ID=Phyra82836;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000031;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 109885 110837 . + . ID=Phyra82836;Parent=Phyra82836;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 109885 110212 . + 0 ID=Phyra82836;Parent=Phyra82836;rank=1 scaffold_78 . exon 109885 110212 . + . ID=Phyra82836.1;Parent=Phyra82836;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 . CDS 110368 110601 . + 0 ID=Phyra82836;Parent=Phyra82836;rank=2 scaffold_78 . exon 110368 110601 . + . ID=Phyra82836.2;Parent=Phyra82836;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_78 . CDS 110725 110837 . + 0 ID=Phyra82836;Parent=Phyra82836;rank=3 scaffold_78 . exon 110725 110837 . + . ID=Phyra82836.3;Parent=Phyra82836;constitutive=1;ensembl_phase=1;rank=3 scaffold_78 ensembl protein_coding_gene 111822 113043 . + . ID=Phyra82837;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000032;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 111822 113043 . + . ID=Phyra82837;Parent=Phyra82837;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 111822 112773 . + 0 ID=Phyra82837;Parent=Phyra82837;rank=1 scaffold_78 . exon 111822 112773 . + . ID=Phyra82837.1;Parent=Phyra82837;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 . CDS 112798 112841 . + 0 ID=Phyra82837;Parent=Phyra82837;rank=2 scaffold_78 . exon 112798 112841 . + . ID=Phyra82837.2;Parent=Phyra82837;constitutive=1;ensembl_phase=1;rank=2 scaffold_78 . CDS 112936 113043 . + 0 ID=Phyra82837;Parent=Phyra82837;rank=3 scaffold_78 . exon 112936 113043 . + . ID=Phyra82837.3;Parent=Phyra82837;constitutive=1;rank=3 scaffold_78 . repeat_region 125758 125769 . ? . description=dust scaffold_78 . repeat_region 126021 126033 . ? . description=dust scaffold_78 . biological_region 129315 129317 0.999 - . logic_name=eponine scaffold_78 . repeat_region 133329 133336 . ? . description=dust scaffold_78 . repeat_region 133917 134077 . + . description=(CTG)n scaffold_78 . repeat_region 133919 133975 . ? . description=dust scaffold_78 . repeat_region 133930 133972 . ? . description=trf scaffold_78 ensembl protein_coding_gene 128168 130255 . - . ID=Phyra82838;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000033;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 128168 130255 . - . ID=Phyra82838;Parent=Phyra82838;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 128168 130255 . - 0 ID=Phyra82838;Parent=Phyra82838;rank=1 scaffold_78 . exon 128168 130255 . - . ID=Phyra82838.1;Parent=Phyra82838;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 133774 135015 . - . ID=Phyra82839;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000034;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 133774 135015 . - . ID=Phyra82839;Parent=Phyra82839;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 133774 135015 . - 0 ID=Phyra82839;Parent=Phyra82839;rank=1 scaffold_78 . exon 133774 135015 . - . ID=Phyra82839.1;Parent=Phyra82839;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 140385 141488 . - . ID=Phyra53110;biotype=protein_coding;external_name=gwEuk.78.27.1;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 140385 141488 . - . ID=Phyra53110;Parent=Phyra53110;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 140385 141488 . - 0 ID=Phyra53110;Parent=Phyra53110;rank=1 scaffold_78 . exon 140385 141488 . - . ID=Phyra53110.1;Parent=Phyra53110;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 137014 138054 . + . ID=Phyra82840;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000035;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 137014 138054 . + . ID=Phyra82840;Parent=Phyra82840;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 137014 138054 . + 0 ID=Phyra82840;Parent=Phyra82840;rank=1 scaffold_78 . exon 137014 138054 . + . ID=Phyra82840.1;Parent=Phyra82840;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 138928 140019 . + . ID=Phyra82841;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000036;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 138928 140019 . + . ID=Phyra82841;Parent=Phyra82841;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 138928 140019 . + 0 ID=Phyra82841;Parent=Phyra82841;rank=1 scaffold_78 . exon 138928 140019 . + . ID=Phyra82841.1;Parent=Phyra82841;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 142284 143105 . + . ID=Phyra82843;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000038;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 142284 143105 . + . ID=Phyra82843;Parent=Phyra82843;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 142284 142652 . + 0 ID=Phyra82843;Parent=Phyra82843;rank=1 scaffold_78 . exon 142284 142652 . + . ID=Phyra82843.1;Parent=Phyra82843;constitutive=1;rank=1 scaffold_78 . CDS 142719 143105 . + 0 ID=Phyra82843;Parent=Phyra82843;rank=2 scaffold_78 . exon 142719 143105 . + . ID=Phyra82843.2;Parent=Phyra82843;constitutive=1;rank=2 scaffold_78 ensembl protein_coding_gene 143636 145687 . - . ID=Phyra82844;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000039;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 143636 145687 . - . ID=Phyra82844;Parent=Phyra82844;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 143636 145687 . - 0 ID=Phyra82844;Parent=Phyra82844;rank=1 scaffold_78 . exon 143636 145687 . - . ID=Phyra82844.1;Parent=Phyra82844;constitutive=1;rank=1 scaffold_78 . biological_region 144513 144515 0.999 + . logic_name=eponine scaffold_78 . biological_region 145249 145254 0.999 + . logic_name=eponine scaffold_78 . biological_region 145277 145279 0.999 - . logic_name=eponine scaffold_78 . biological_region 145288 145289 0.999 + . logic_name=eponine scaffold_78 . biological_region 145363 145366 0.999 - . logic_name=eponine scaffold_78 . biological_region 145574 145578 0.999 + . logic_name=eponine scaffold_78 . biological_region 145693 145696 0.999 + . logic_name=eponine scaffold_78 . repeat_region 145970 145997 . ? . description=trf scaffold_78 . repeat_region 146353 146361 . ? . description=dust scaffold_78 . biological_region 146804 146806 0.999 - . logic_name=eponine scaffold_78 . biological_region 148208 148209 0.999 - . logic_name=eponine scaffold_78 . biological_region 149969 149971 0.999 - . logic_name=eponine scaffold_78 . biological_region 150967 150973 0.999 + . logic_name=eponine scaffold_78 . repeat_region 152944 152990 . ? . description=trf scaffold_78 ensembl protein_coding_gene 146446 148160 . - . ID=Phyra82845;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000040;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 146446 148160 . - . ID=Phyra82845;Parent=Phyra82845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 146446 147666 . - 0 ID=Phyra82845;Parent=Phyra82845;rank=2 scaffold_78 . exon 146446 147666 . - . ID=Phyra82845.2;Parent=Phyra82845;constitutive=1;rank=2 scaffold_78 . CDS 147735 148160 . - 0 ID=Phyra82845;Parent=Phyra82845;rank=1 scaffold_78 . exon 147735 148160 . - . ID=Phyra82845.1;Parent=Phyra82845;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 149814 150182 . + . ID=Phyra82846;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000041;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 149814 150182 . + . ID=Phyra82846;Parent=Phyra82846;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 149814 150182 . + 0 ID=Phyra82846;Parent=Phyra82846;rank=1 scaffold_78 . exon 149814 150182 . + . ID=Phyra82846.1;Parent=Phyra82846;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 150678 152864 . - . ID=Phyra82847;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000042;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 150678 152864 . - . ID=Phyra82847;Parent=Phyra82847;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 150678 152376 . - 0 ID=Phyra82847;Parent=Phyra82847;rank=2 scaffold_78 . exon 150678 152376 . - . ID=Phyra82847.2;Parent=Phyra82847;constitutive=1;ensembl_phase=2;rank=2 scaffold_78 . CDS 152473 152864 . - 0 ID=Phyra82847;Parent=Phyra82847;rank=1 scaffold_78 . exon 152473 152864 . - . ID=Phyra82847.1;Parent=Phyra82847;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_78 ensembl protein_coding_gene 153969 154712 . + . ID=Phyra82848;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000043;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 153969 154712 . + . ID=Phyra82848;Parent=Phyra82848;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 153969 154712 . + 0 ID=Phyra82848;Parent=Phyra82848;rank=1 scaffold_78 . exon 153969 154712 . + . ID=Phyra82848.1;Parent=Phyra82848;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 154774 156072 . - . ID=Phyra82849;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000044;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 154774 156072 . - . ID=Phyra82849;Parent=Phyra82849;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 154774 156072 . - 0 ID=Phyra82849;Parent=Phyra82849;rank=1 scaffold_78 . exon 154774 156072 . - . ID=Phyra82849.1;Parent=Phyra82849;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 158107 159864 . + . ID=Phyra82850;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000045;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 158107 159864 . + . ID=Phyra82850;Parent=Phyra82850;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 158107 158115 . + 0 ID=Phyra82850;Parent=Phyra82850;rank=1 scaffold_78 . exon 158107 158115 . + . ID=Phyra82850.1;Parent=Phyra82850;constitutive=1;rank=1 scaffold_78 . CDS 158272 158444 . + 0 ID=Phyra82850;Parent=Phyra82850;rank=2 scaffold_78 . exon 158272 158444 . + . ID=Phyra82850.2;Parent=Phyra82850;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_78 . CDS 158543 158617 . + 0 ID=Phyra82850;Parent=Phyra82850;rank=3 scaffold_78 . exon 158543 158617 . + . ID=Phyra82850.3;Parent=Phyra82850;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_78 . CDS 158895 159191 . + 0 ID=Phyra82850;Parent=Phyra82850;rank=4 scaffold_78 . exon 158895 159191 . + . ID=Phyra82850.4;Parent=Phyra82850;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_78 . CDS 159323 159506 . + 0 ID=Phyra82850;Parent=Phyra82850;rank=5 scaffold_78 . exon 159323 159506 . + . ID=Phyra82850.5;Parent=Phyra82850;constitutive=1;ensembl_phase=2;rank=5 scaffold_78 . CDS 159566 159763 . + 0 ID=Phyra82850;Parent=Phyra82850;rank=6 scaffold_78 . exon 159566 159763 . + . ID=Phyra82850.6;Parent=Phyra82850;constitutive=1;rank=6 scaffold_78 . CDS 159832 159864 . + 0 ID=Phyra82850;Parent=Phyra82850;rank=7 scaffold_78 . exon 159832 159864 . + . ID=Phyra82850.7;Parent=Phyra82850;constitutive=1;rank=7 scaffold_78 ensembl protein_coding_gene 161275 167580 . + . ID=Phyra96455;biotype=protein_coding;external_name=C_scaffold_78000014;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 161275 167580 . + . ID=Phyra96455;Parent=Phyra96455;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 161275 161363 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=1 scaffold_78 . exon 161275 161363 . + . ID=Phyra96455.1;Parent=Phyra96455;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_78 . CDS 161436 161954 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=2 scaffold_78 . exon 161436 161954 . + . ID=Phyra96455.2;Parent=Phyra96455;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_78 . CDS 162060 162175 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=3 scaffold_78 . exon 162060 162175 . + . ID=Phyra96455.3;Parent=Phyra96455;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_78 . CDS 162299 162418 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=4 scaffold_78 . exon 162299 162418 . + . ID=Phyra96455.4;Parent=Phyra96455;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_78 . CDS 162653 162754 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=5 scaffold_78 . exon 162653 162754 . + . ID=Phyra96455.5;Parent=Phyra96455;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_78 . CDS 162926 163081 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=6 scaffold_78 . exon 162926 163081 . + . ID=Phyra96455.6;Parent=Phyra96455;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_78 . CDS 163136 163181 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=7 scaffold_78 . exon 163136 163181 . + . ID=Phyra96455.7;Parent=Phyra96455;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_78 . CDS 163254 163385 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=8 scaffold_78 . exon 163254 163385 . + . ID=Phyra96455.8;Parent=Phyra96455;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_78 . CDS 163525 163604 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=9 scaffold_78 . CDS 163694 163761 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=10 scaffold_78 . CDS 163783 163811 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=11 scaffold_78 . CDS 163851 164944 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=12 scaffold_78 . CDS 165011 165160 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=13 scaffold_78 . CDS 165491 165706 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=14 scaffold_78 . CDS 165749 166033 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=15 scaffold_78 . CDS 166121 166384 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=16 scaffold_78 . CDS 166670 166923 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=17 scaffold_78 . CDS 166980 167106 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=18 scaffold_78 . CDS 167126 167363 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=19 scaffold_78 . CDS 167409 167580 . + 0 ID=Phyra96455;Parent=Phyra96455;rank=20 scaffold_78 . biological_region 168290 168293 0.999 + . logic_name=eponine scaffold_78 . repeat_region 171555 171567 . ? . description=dust scaffold_78 ensembl protein_coding_gene 170055 170759 . - . ID=Phyra53124;biotype=protein_coding;external_name=gwEuk.78.41.1;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 170055 170759 . - . ID=Phyra53124;Parent=Phyra53124;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 170055 170759 . - 0 ID=Phyra53124;Parent=Phyra53124;rank=1 scaffold_78 . exon 170055 170759 . - . ID=Phyra53124.1;Parent=Phyra53124;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 168415 169785 . + . ID=Phyra72056;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_78000004;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 168415 169785 . + . ID=Phyra72056;Parent=Phyra72056;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 168415 169785 . + 0 ID=Phyra72056;Parent=Phyra72056;rank=1 scaffold_78 . exon 168415 169785 . + . ID=Phyra72056.1;Parent=Phyra72056;constitutive=1;rank=1 scaffold_78 . exon 163525 163604 . + . ID=Phyra96455.9;Parent=Phyra96455;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_78 . exon 163694 163761 . + . ID=Phyra96455.10;Parent=Phyra96455;constitutive=1;ensembl_phase=1;rank=10 scaffold_78 . exon 163783 163811 . + . ID=Phyra96455.11;Parent=Phyra96455;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_78 . exon 163851 164944 . + . ID=Phyra96455.12;Parent=Phyra96455;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_78 . exon 165011 165160 . + . ID=Phyra96455.13;Parent=Phyra96455;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_78 . exon 165491 165706 . + . ID=Phyra96455.14;Parent=Phyra96455;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_78 . exon 165749 166033 . + . ID=Phyra96455.15;Parent=Phyra96455;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=15 scaffold_78 . exon 166121 166384 . + . ID=Phyra96455.16;Parent=Phyra96455;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=16 scaffold_78 . exon 166670 166923 . + . ID=Phyra96455.17;Parent=Phyra96455;constitutive=1;ensembl_phase=1;rank=17 scaffold_78 . exon 166980 167106 . + . ID=Phyra96455.18;Parent=Phyra96455;constitutive=1;ensembl_end_phase=1;rank=18 scaffold_78 . exon 167126 167363 . + . ID=Phyra96455.19;Parent=Phyra96455;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=19 scaffold_78 . exon 167409 167580 . + . ID=Phyra96455.20;Parent=Phyra96455;constitutive=1;ensembl_phase=2;rank=20 scaffold_78 ensembl protein_coding_gene 173416 174134 . + . ID=Phyra82854;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000049;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 173416 174134 . + . ID=Phyra82854;Parent=Phyra82854;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 173416 173461 . + 0 ID=Phyra82854;Parent=Phyra82854;rank=1 scaffold_78 . exon 173416 173461 . + . ID=Phyra82854.1;Parent=Phyra82854;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 . CDS 173743 174134 . + 0 ID=Phyra82854;Parent=Phyra82854;rank=2 scaffold_78 . exon 173743 174134 . + . ID=Phyra82854.2;Parent=Phyra82854;constitutive=1;ensembl_phase=1;rank=2 scaffold_78 . repeat_region 184749 189169 . ? . description=dust scaffold_78 . biological_region 189715 189719 0.999 + . logic_name=eponine scaffold_78 . repeat_region 190198 203316 . ? . description=dust scaffold_78 . repeat_region 190198 203316 . ? . description=dust scaffold_78 . repeat_region 205787 205845 . ? . description=trf scaffold_78 . biological_region 206752 206754 0.999 + . logic_name=eponine scaffold_78 . biological_region 206758 206760 0.999 + . logic_name=eponine scaffold_78 . repeat_region 207988 208037 . ? . description=dust scaffold_78 . repeat_region 208251 208265 . ? . description=dust scaffold_78 . repeat_region 208518 208549 . ? . description=trf scaffold_78 . repeat_region 208656 208744 . ? . description=trf scaffold_78 . repeat_region 208812 208870 . ? . description=trf scaffold_78 . biological_region 209105 209110 0.999 - . logic_name=eponine scaffold_78 . biological_region 209251 209256 0.999 - . logic_name=eponine scaffold_78 . biological_region 209309 209312 0.999 + . logic_name=eponine scaffold_78 . repeat_region 209587 209636 . ? . description=dust scaffold_78 ensembl protein_coding_gene 205810 207006 . - . ID=Phyra82855;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000050;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 205810 207006 . - . ID=Phyra82855;Parent=Phyra82855;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 205810 207006 . - 0 ID=Phyra82855;Parent=Phyra82855;rank=1 scaffold_78 . exon 205810 207006 . - . ID=Phyra82855.1;Parent=Phyra82855;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 209071 211152 . + . ID=Phyra82856;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_78000051;logic_name=jgi_phyra1 scaffold_78 ensembl transcript 209071 211152 . + . ID=Phyra82856;Parent=Phyra82856;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_78 . CDS 209071 209492 . + 0 ID=Phyra82856;Parent=Phyra82856;rank=1 scaffold_78 . exon 209071 209492 . + . ID=Phyra82856.1;Parent=Phyra82856;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_78 . CDS 209754 210036 . + 0 ID=Phyra82856;Parent=Phyra82856;rank=2 scaffold_78 . exon 209754 210036 . + . ID=Phyra82856.2;Parent=Phyra82856;constitutive=1;ensembl_phase=2;rank=2 scaffold_78 . CDS 210256 211152 . + 0 ID=Phyra82856;Parent=Phyra82856;rank=3 scaffold_78 . exon 210256 211152 . + . ID=Phyra82856.3;Parent=Phyra82856;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_82 1 214170 scaffold_82 . biological_region 3597 3605 0.999 + . logic_name=eponine scaffold_82 . biological_region 3643 3647 0.999 - . logic_name=eponine scaffold_82 . repeat_region 3764 3819 . ? . description=trf scaffold_82 . repeat_region 3777 3815 . ? . description=dust scaffold_82 . repeat_region 6432 6472 . ? . description=trf scaffold_82 . repeat_region 6545 6577 . ? . description=trf scaffold_82 . repeat_region 6630 6701 . ? . description=trf scaffold_82 . repeat_region 7034 7083 . ? . description=dust scaffold_82 ensembl protein_coding_gene 7542 11270 . + . ID=Phyra53641;biotype=protein_coding;external_name=gwEuk.82.13.1;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 7542 11270 . + . ID=Phyra53641;Parent=Phyra53641;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 7542 11270 . + 0 ID=Phyra53641;Parent=Phyra53641;rank=1 scaffold_82 . exon 7542 11270 . + . ID=Phyra53641.1;Parent=Phyra53641;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 5334 6044 . - . ID=Phyra83039;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000003;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 5334 6044 . - . ID=Phyra83039;Parent=Phyra83039;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 5334 6044 . - 0 ID=Phyra83039;Parent=Phyra83039;rank=1 scaffold_82 . exon 5334 6044 . - . ID=Phyra83039.1;Parent=Phyra83039;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 6346 6891 . - . ID=Phyra83040;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000004;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 6346 6891 . - . ID=Phyra83040;Parent=Phyra83040;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 6346 6891 . - 0 ID=Phyra83040;Parent=Phyra83040;rank=1 scaffold_82 . exon 6346 6891 . - . ID=Phyra83040.1;Parent=Phyra83040;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 171 530 . - . ID=Phyra96498;biotype=protein_coding;external_name=C_scaffold_82000001;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 171 530 . - . ID=Phyra96498;Parent=Phyra96498;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 171 530 . - 0 ID=Phyra96498;Parent=Phyra96498;rank=1 scaffold_82 . exon 171 530 . - . ID=Phyra96498.1;Parent=Phyra96498;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 813 1881 . + . ID=Phyra96499;biotype=protein_coding;external_name=C_scaffold_82000002;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 813 1881 . + . ID=Phyra96499;Parent=Phyra96499;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 813 888 . + 0 ID=Phyra96499;Parent=Phyra96499;rank=1 scaffold_82 . exon 813 888 . + . ID=Phyra96499.1;Parent=Phyra96499;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . CDS 965 1199 . + 0 ID=Phyra96499;Parent=Phyra96499;rank=2 scaffold_82 . exon 965 1199 . + . ID=Phyra96499.2;Parent=Phyra96499;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_82 . CDS 1239 1447 . + 0 ID=Phyra96499;Parent=Phyra96499;rank=3 scaffold_82 . exon 1239 1447 . + . ID=Phyra96499.3;Parent=Phyra96499;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_82 . CDS 1544 1881 . + 0 ID=Phyra96499;Parent=Phyra96499;rank=4 scaffold_82 . exon 1544 1881 . + . ID=Phyra96499.4;Parent=Phyra96499;constitutive=1;ensembl_phase=1;rank=4 scaffold_82 ensembl protein_coding_gene 1952 4007 . - . ID=Phyra96500;biotype=protein_coding;external_name=C_scaffold_82000003;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 1952 4007 . - . ID=Phyra96500;Parent=Phyra96500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 1952 2317 . - 0 ID=Phyra96500;Parent=Phyra96500;rank=6 scaffold_82 . exon 1952 2317 . - . ID=Phyra96500.6;Parent=Phyra96500;constitutive=1;rank=6 scaffold_82 . CDS 2372 2448 . - 0 ID=Phyra96500;Parent=Phyra96500;rank=5 scaffold_82 . exon 2372 2448 . - . ID=Phyra96500.5;Parent=Phyra96500;constitutive=1;ensembl_phase=1;rank=5 scaffold_82 . CDS 2585 2672 . - 0 ID=Phyra96500;Parent=Phyra96500;rank=4 scaffold_82 . exon 2585 2672 . - . ID=Phyra96500.4;Parent=Phyra96500;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_82 . CDS 2699 2978 . - 0 ID=Phyra96500;Parent=Phyra96500;rank=3 scaffold_82 . exon 2699 2978 . - . ID=Phyra96500.3;Parent=Phyra96500;constitutive=1;ensembl_phase=2;rank=3 scaffold_82 . CDS 3028 3731 . - 0 ID=Phyra96500;Parent=Phyra96500;rank=2 scaffold_82 . exon 3028 3731 . - . ID=Phyra96500.2;Parent=Phyra96500;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_82 . CDS 3756 4007 . - 0 ID=Phyra96500;Parent=Phyra96500;rank=1 scaffold_82 . exon 3756 4007 . - . ID=Phyra96500.1;Parent=Phyra96500;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 4137 4890 . + . ID=Phyra96502;biotype=protein_coding;external_name=C_scaffold_82000005;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 4137 4890 . + . ID=Phyra96502;Parent=Phyra96502;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 4137 4231 . + 0 ID=Phyra96502;Parent=Phyra96502;rank=1 scaffold_82 . exon 4137 4231 . + . ID=Phyra96502.1;Parent=Phyra96502;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 . CDS 4323 4832 . + 0 ID=Phyra96502;Parent=Phyra96502;rank=2 scaffold_82 . exon 4323 4832 . + . ID=Phyra96502.2;Parent=Phyra96502;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_82 . CDS 4875 4890 . + 0 ID=Phyra96502;Parent=Phyra96502;rank=3 scaffold_82 . exon 4875 4890 . + . ID=Phyra96502.3;Parent=Phyra96502;constitutive=1;ensembl_phase=2;rank=3 scaffold_82 ensembl protein_coding_gene 11525 12834 . + . ID=Phyra83043;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000007;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 11525 12834 . + . ID=Phyra83043;Parent=Phyra83043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 11525 11877 . + 0 ID=Phyra83043;Parent=Phyra83043;rank=1 scaffold_82 . exon 11525 11877 . + . ID=Phyra83043.1;Parent=Phyra83043;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 . CDS 11941 12637 . + 0 ID=Phyra83043;Parent=Phyra83043;rank=2 scaffold_82 . exon 11941 12637 . + . ID=Phyra83043.2;Parent=Phyra83043;constitutive=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 12706 12834 . + 0 ID=Phyra83043;Parent=Phyra83043;rank=3 scaffold_82 . exon 12706 12834 . + . ID=Phyra83043.3;Parent=Phyra83043;constitutive=1;rank=3 scaffold_82 ensembl protein_coding_gene 14066 14753 . - . ID=Phyra83044;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000008;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 14066 14753 . - . ID=Phyra83044;Parent=Phyra83044;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 14066 14610 . - 0 ID=Phyra83044;Parent=Phyra83044;rank=2 scaffold_82 . exon 14066 14610 . - . ID=Phyra83044.2;Parent=Phyra83044;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 14630 14753 . - 0 ID=Phyra83044;Parent=Phyra83044;rank=1 scaffold_82 . exon 14630 14753 . - . ID=Phyra83044.1;Parent=Phyra83044;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 ensembl protein_coding_gene 15763 16362 . + . ID=Phyra83045;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000009;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 15763 16362 . + . ID=Phyra83045;Parent=Phyra83045;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 15763 16362 . + 0 ID=Phyra83045;Parent=Phyra83045;rank=1 scaffold_82 . exon 15763 16362 . + . ID=Phyra83045.1;Parent=Phyra83045;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 16989 17843 . - . ID=Phyra83046;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000010;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 16989 17843 . - . ID=Phyra83046;Parent=Phyra83046;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 16989 17843 . - 0 ID=Phyra83046;Parent=Phyra83046;rank=1 scaffold_82 . exon 16989 17843 . - . ID=Phyra83046.1;Parent=Phyra83046;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 18791 19417 . + . ID=Phyra83047;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000011;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 18791 19417 . + . ID=Phyra83047;Parent=Phyra83047;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 18791 19417 . + 0 ID=Phyra83047;Parent=Phyra83047;rank=1 scaffold_82 . exon 18791 19417 . + . ID=Phyra83047.1;Parent=Phyra83047;constitutive=1;rank=1 scaffold_82 . repeat_region 23349 23392 . ? . description=trf scaffold_82 . repeat_region 26584 26651 . ? . description=trf scaffold_82 . repeat_region 26705 26812 . ? . description=trf scaffold_82 . repeat_region 26711 26774 . ? . description=dust scaffold_82 . repeat_region 28042 28167 . ? . description=trf scaffold_82 ensembl protein_coding_gene 19694 20390 . - . ID=Phyra72076;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_82000002;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 19694 20390 . - . ID=Phyra72076;Parent=Phyra72076;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 19694 19946 . - 0 ID=Phyra72076;Parent=Phyra72076;rank=2 scaffold_82 . exon 19694 19946 . - . ID=Phyra72076.2;Parent=Phyra72076;constitutive=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 20023 20390 . - 0 ID=Phyra72076;Parent=Phyra72076;rank=1 scaffold_82 . exon 20023 20390 . - . ID=Phyra72076.1;Parent=Phyra72076;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 ensembl protein_coding_gene 21564 23108 . - . ID=Phyra72077;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_82000003;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 21564 23108 . - . ID=Phyra72077;Parent=Phyra72077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 21564 23108 . - 0 ID=Phyra72077;Parent=Phyra72077;rank=1 scaffold_82 . exon 21564 23108 . - . ID=Phyra72077.1;Parent=Phyra72077;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 24932 26137 . + . ID=Phyra83050;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000014;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 24932 26137 . + . ID=Phyra83050;Parent=Phyra83050;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 24932 26137 . + 0 ID=Phyra83050;Parent=Phyra83050;rank=1 scaffold_82 . exon 24932 26137 . + . ID=Phyra83050.1;Parent=Phyra83050;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 26308 26922 . - . ID=Phyra83051;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000015;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 26308 26922 . - . ID=Phyra83051;Parent=Phyra83051;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 26308 26922 . - 0 ID=Phyra83051;Parent=Phyra83051;rank=1 scaffold_82 . exon 26308 26922 . - . ID=Phyra83051.1;Parent=Phyra83051;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 27933 28540 . + . ID=Phyra83052;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000016;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 27933 28540 . + . ID=Phyra83052;Parent=Phyra83052;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 27933 28096 . + 0 ID=Phyra83052;Parent=Phyra83052;rank=1 scaffold_82 . exon 27933 28096 . + . ID=Phyra83052.1;Parent=Phyra83052;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 . CDS 28132 28540 . + 0 ID=Phyra83052;Parent=Phyra83052;rank=2 scaffold_82 . exon 28132 28540 . + . ID=Phyra83052.2;Parent=Phyra83052;constitutive=1;ensembl_phase=2;rank=2 scaffold_82 ensembl protein_coding_gene 29167 29919 . - . ID=Phyra83053;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000017;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 29167 29919 . - . ID=Phyra83053;Parent=Phyra83053;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 29167 29919 . - 0 ID=Phyra83053;Parent=Phyra83053;rank=1 scaffold_82 . exon 29167 29919 . - . ID=Phyra83053.1;Parent=Phyra83053;constitutive=1;rank=1 scaffold_82 . biological_region 31482 31485 0.999 + . logic_name=eponine scaffold_82 . biological_region 32304 32309 0.999 - . logic_name=eponine scaffold_82 . biological_region 32871 32872 0.999 - . logic_name=eponine scaffold_82 . biological_region 36668 36671 0.999 + . logic_name=eponine scaffold_82 . biological_region 36892 36897 0.999 + . logic_name=eponine scaffold_82 . biological_region 37009 37015 0.999 + . logic_name=eponine scaffold_82 . biological_region 37081 37085 0.999 - . logic_name=eponine scaffold_82 . biological_region 37107 37110 0.999 + . logic_name=eponine scaffold_82 . biological_region 37116 37120 0.999 - . logic_name=eponine scaffold_82 . biological_region 37216 37222 0.999 + . logic_name=eponine scaffold_82 . biological_region 37226 37229 0.999 + . logic_name=eponine scaffold_82 . biological_region 37250 37256 0.999 + . logic_name=eponine scaffold_82 . biological_region 37267 37272 0.999 - . logic_name=eponine scaffold_82 . biological_region 37274 37282 0.999 + . logic_name=eponine scaffold_82 . biological_region 37292 37299 0.999 + . logic_name=eponine scaffold_82 . biological_region 37321 37325 0.999 + . logic_name=eponine scaffold_82 . biological_region 37393 37398 0.999 + . logic_name=eponine scaffold_82 . biological_region 37402 37420 0.999 - . logic_name=eponine scaffold_82 . biological_region 37421 37426 0.999 + . logic_name=eponine scaffold_82 . biological_region 37458 37467 0.999 - . logic_name=eponine scaffold_82 . biological_region 37500 37510 0.999 - . logic_name=eponine scaffold_82 . biological_region 38420 38423 0.999 - . logic_name=eponine scaffold_82 ensembl protein_coding_gene 30867 31481 . + . ID=Phyra83054;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000018;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 30867 31481 . + . ID=Phyra83054;Parent=Phyra83054;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 30867 31481 . + 0 ID=Phyra83054;Parent=Phyra83054;rank=1 scaffold_82 . exon 30867 31481 . + . ID=Phyra83054.1;Parent=Phyra83054;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 36247 37548 . - . ID=Phyra83057;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000021;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 36247 37548 . - . ID=Phyra83057;Parent=Phyra83057;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 36247 37548 . - 0 ID=Phyra83057;Parent=Phyra83057;rank=1 scaffold_82 . exon 36247 37548 . - . ID=Phyra83057.1;Parent=Phyra83057;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 32445 36035 . + . ID=Phyra96506;biotype=protein_coding;external_name=C_scaffold_82000009;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 32445 36035 . + . ID=Phyra96506;Parent=Phyra96506;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 32445 33152 . + 0 ID=Phyra96506;Parent=Phyra96506;rank=1 scaffold_82 . exon 32445 33152 . + . ID=Phyra96506.1;Parent=Phyra96506;constitutive=1;rank=1 scaffold_82 . CDS 33309 33438 . + 0 ID=Phyra96506;Parent=Phyra96506;rank=2 scaffold_82 . exon 33309 33438 . + . ID=Phyra96506.2;Parent=Phyra96506;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_82 . CDS 33655 33825 . + 0 ID=Phyra96506;Parent=Phyra96506;rank=3 scaffold_82 . exon 33655 33825 . + . ID=Phyra96506.3;Parent=Phyra96506;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_82 . CDS 34055 34089 . + 0 ID=Phyra96506;Parent=Phyra96506;rank=4 scaffold_82 . exon 34055 34089 . + . ID=Phyra96506.4;Parent=Phyra96506;constitutive=1;ensembl_phase=1;rank=4 scaffold_82 . CDS 34152 34431 . + 0 ID=Phyra96506;Parent=Phyra96506;rank=5 scaffold_82 . exon 34152 34431 . + . ID=Phyra96506.5;Parent=Phyra96506;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_82 . CDS 34462 34682 . + 0 ID=Phyra96506;Parent=Phyra96506;rank=6 scaffold_82 . exon 34462 34682 . + . ID=Phyra96506.6;Parent=Phyra96506;constitutive=1;ensembl_phase=1;rank=6 scaffold_82 . CDS 34809 36035 . + 0 ID=Phyra96506;Parent=Phyra96506;rank=7 scaffold_82 . exon 34809 36035 . + . ID=Phyra96506.7;Parent=Phyra96506;constitutive=1;rank=7 scaffold_82 ensembl protein_coding_gene 37848 41786 . + . ID=Phyra96509;biotype=protein_coding;external_name=C_scaffold_82000012;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 37848 41786 . + . ID=Phyra96509;Parent=Phyra96509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 37848 37910 . + 0 ID=Phyra96509;Parent=Phyra96509;rank=1 scaffold_82 . exon 37848 37910 . + . ID=Phyra96509.1;Parent=Phyra96509;constitutive=1;rank=1 scaffold_82 . CDS 37975 38425 . + 0 ID=Phyra96509;Parent=Phyra96509;rank=2 scaffold_82 . exon 37975 38425 . + . ID=Phyra96509.2;Parent=Phyra96509;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_82 . CDS 39149 39762 . + 0 ID=Phyra96509;Parent=Phyra96509;rank=3 scaffold_82 . CDS 39964 40659 . + 0 ID=Phyra96509;Parent=Phyra96509;rank=4 scaffold_82 . CDS 40765 40939 . + 0 ID=Phyra96509;Parent=Phyra96509;rank=5 scaffold_82 . CDS 41006 41125 . + 0 ID=Phyra96509;Parent=Phyra96509;rank=6 scaffold_82 . CDS 41306 41449 . + 0 ID=Phyra96509;Parent=Phyra96509;rank=7 scaffold_82 . CDS 41573 41700 . + 0 ID=Phyra96509;Parent=Phyra96509;rank=8 scaffold_82 . CDS 41763 41786 . + 0 ID=Phyra96509;Parent=Phyra96509;rank=9 scaffold_82 . repeat_region 45421 45432 . ? . description=dust scaffold_82 ensembl protein_coding_gene 44777 45103 . + . ID=Phyra83060;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000024;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 44777 45103 . + . ID=Phyra83060;Parent=Phyra83060;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 44777 45103 . + 0 ID=Phyra83060;Parent=Phyra83060;rank=1 scaffold_82 . exon 44777 45103 . + . ID=Phyra83060.1;Parent=Phyra83060;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 45679 46773 . + . ID=Phyra83061;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000025;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 45679 46773 . + . ID=Phyra83061;Parent=Phyra83061;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 45679 46373 . + 0 ID=Phyra83061;Parent=Phyra83061;rank=1 scaffold_82 . exon 45679 46373 . + . ID=Phyra83061.1;Parent=Phyra83061;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 . CDS 46442 46631 . + 0 ID=Phyra83061;Parent=Phyra83061;rank=2 scaffold_82 . exon 46442 46631 . + . ID=Phyra83061.2;Parent=Phyra83061;constitutive=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 46708 46773 . + 0 ID=Phyra83061;Parent=Phyra83061;rank=3 scaffold_82 . exon 46708 46773 . + . ID=Phyra83061.3;Parent=Phyra83061;constitutive=1;rank=3 scaffold_82 . exon 39149 39762 . + . ID=Phyra96509.3;Parent=Phyra96509;constitutive=1;ensembl_phase=1;rank=3 scaffold_82 . exon 39964 40659 . + . ID=Phyra96509.4;Parent=Phyra96509;constitutive=1;rank=4 scaffold_82 . exon 40765 40939 . + . ID=Phyra96509.5;Parent=Phyra96509;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_82 . exon 41006 41125 . + . ID=Phyra96509.6;Parent=Phyra96509;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_82 . exon 41306 41449 . + . ID=Phyra96509.7;Parent=Phyra96509;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_82 . exon 41573 41700 . + . ID=Phyra96509.8;Parent=Phyra96509;constitutive=1;ensembl_phase=1;rank=8 scaffold_82 . exon 41763 41786 . + . ID=Phyra96509.9;Parent=Phyra96509;constitutive=1;rank=9 scaffold_82 ensembl protein_coding_gene 42589 43663 . + . ID=Phyra96510;biotype=protein_coding;external_name=C_scaffold_82000013;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 42589 43663 . + . ID=Phyra96510;Parent=Phyra96510;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 42589 43277 . + 0 ID=Phyra96510;Parent=Phyra96510;rank=1 scaffold_82 . exon 42589 43277 . + . ID=Phyra96510.1;Parent=Phyra96510;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 . CDS 43335 43524 . + 0 ID=Phyra96510;Parent=Phyra96510;rank=2 scaffold_82 . exon 43335 43524 . + . ID=Phyra96510.2;Parent=Phyra96510;constitutive=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 43598 43663 . + 0 ID=Phyra96510;Parent=Phyra96510;rank=3 scaffold_82 . exon 43598 43663 . + . ID=Phyra96510.3;Parent=Phyra96510;constitutive=1;rank=3 scaffold_82 ensembl protein_coding_gene 47389 48893 . + . ID=Phyra96512;biotype=protein_coding;external_name=C_scaffold_82000015;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 47389 48893 . + . ID=Phyra96512;Parent=Phyra96512;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 47389 48787 . + 0 ID=Phyra96512;Parent=Phyra96512;rank=1 scaffold_82 . exon 47389 48787 . + . ID=Phyra96512.1;Parent=Phyra96512;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . CDS 48859 48893 . + 0 ID=Phyra96512;Parent=Phyra96512;rank=2 scaffold_82 . biological_region 49452 49452 0.999 + . logic_name=eponine scaffold_82 . biological_region 49453 49456 0.999 - . logic_name=eponine scaffold_82 . biological_region 49509 49509 0.999 + . logic_name=eponine scaffold_82 . repeat_region 54508 54565 . ? . description=trf scaffold_82 . biological_region 55367 55369 0.999 + . logic_name=eponine scaffold_82 . repeat_region 57479 57517 . ? . description=trf scaffold_82 ensembl protein_coding_gene 49440 54793 . - . ID=Phyra83063;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000027;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 49440 54793 . - . ID=Phyra83063;Parent=Phyra83063;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 49440 49663 . - 0 ID=Phyra83063;Parent=Phyra83063;rank=7 scaffold_82 . exon 49440 49663 . - . ID=Phyra83063.7;Parent=Phyra83063;constitutive=1;ensembl_phase=1;rank=7 scaffold_82 . CDS 49686 49701 . - 0 ID=Phyra83063;Parent=Phyra83063;rank=6 scaffold_82 . exon 49686 49701 . - . ID=Phyra83063.6;Parent=Phyra83063;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_82 . CDS 49793 50700 . - 0 ID=Phyra83063;Parent=Phyra83063;rank=5 scaffold_82 . exon 49793 50700 . - . ID=Phyra83063.5;Parent=Phyra83063;constitutive=1;ensembl_phase=1;rank=5 scaffold_82 . CDS 50899 52863 . - 0 ID=Phyra83063;Parent=Phyra83063;rank=4 scaffold_82 . exon 50899 52863 . - . ID=Phyra83063.4;Parent=Phyra83063;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_82 . CDS 52927 53224 . - 0 ID=Phyra83063;Parent=Phyra83063;rank=3 scaffold_82 . exon 52927 53224 . - . ID=Phyra83063.3;Parent=Phyra83063;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_82 . CDS 53273 53827 . - 0 ID=Phyra83063;Parent=Phyra83063;rank=2 scaffold_82 . exon 53273 53827 . - . ID=Phyra83063.2;Parent=Phyra83063;constitutive=1;rank=2 scaffold_82 . CDS 54119 54793 . - 0 ID=Phyra83063;Parent=Phyra83063;rank=1 scaffold_82 . exon 54119 54793 . - . ID=Phyra83063.1;Parent=Phyra83063;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 55072 57563 . - . ID=Phyra83064;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000028;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 55072 57563 . - . ID=Phyra83064;Parent=Phyra83064;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 55072 57446 . - 0 ID=Phyra83064;Parent=Phyra83064;rank=2 scaffold_82 . exon 55072 57446 . - . ID=Phyra83064.2;Parent=Phyra83064;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 57470 57563 . - 0 ID=Phyra83064;Parent=Phyra83064;rank=1 scaffold_82 . exon 57470 57563 . - . ID=Phyra83064.1;Parent=Phyra83064;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . exon 48859 48893 . + . ID=Phyra96512.2;Parent=Phyra96512;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . repeat_region 64406 64414 . ? . description=dust scaffold_82 ensembl protein_coding_gene 63395 66052 . - . ID=Phyra83066;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000030;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 63395 66052 . - . ID=Phyra83066;Parent=Phyra83066;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 63395 63460 . - 0 ID=Phyra83066;Parent=Phyra83066;rank=7 scaffold_82 . exon 63395 63460 . - . ID=Phyra83066.7;Parent=Phyra83066;constitutive=1;rank=7 scaffold_82 . CDS 63697 63735 . - 0 ID=Phyra83066;Parent=Phyra83066;rank=6 scaffold_82 . exon 63697 63735 . - . ID=Phyra83066.6;Parent=Phyra83066;constitutive=1;rank=6 scaffold_82 . CDS 63857 64162 . - 0 ID=Phyra83066;Parent=Phyra83066;rank=5 scaffold_82 . exon 63857 64162 . - . ID=Phyra83066.5;Parent=Phyra83066;constitutive=1;rank=5 scaffold_82 . CDS 64423 64560 . - 0 ID=Phyra83066;Parent=Phyra83066;rank=4 scaffold_82 . exon 64423 64560 . - . ID=Phyra83066.4;Parent=Phyra83066;constitutive=1;rank=4 scaffold_82 . CDS 64896 65237 . - 0 ID=Phyra83066;Parent=Phyra83066;rank=3 scaffold_82 . exon 64896 65237 . - . ID=Phyra83066.3;Parent=Phyra83066;constitutive=1;rank=3 scaffold_82 . CDS 65315 65470 . - 0 ID=Phyra83066;Parent=Phyra83066;rank=2 scaffold_82 . exon 65315 65470 . - . ID=Phyra83066.2;Parent=Phyra83066;constitutive=1;rank=2 scaffold_82 . CDS 65576 66052 . - 0 ID=Phyra83066;Parent=Phyra83066;rank=1 scaffold_82 . exon 65576 66052 . - . ID=Phyra83066.1;Parent=Phyra83066;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 67359 68372 . + . ID=Phyra83067;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000031;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 67359 68372 . + . ID=Phyra83067;Parent=Phyra83067;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 67359 68372 . + 0 ID=Phyra83067;Parent=Phyra83067;rank=1 scaffold_82 . exon 67359 68372 . + . ID=Phyra83067.1;Parent=Phyra83067;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 59634 61484 . - . ID=Phyra96514;biotype=protein_coding;external_name=C_scaffold_82000017;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 59634 61484 . - . ID=Phyra96514;Parent=Phyra96514;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 59634 59800 . - 0 ID=Phyra96514;Parent=Phyra96514;rank=8 scaffold_82 . exon 59634 59800 . - . ID=Phyra96514.8;Parent=Phyra96514;constitutive=1;ensembl_phase=1;rank=8 scaffold_82 . CDS 59870 59963 . - 0 ID=Phyra96514;Parent=Phyra96514;rank=7 scaffold_82 . exon 59870 59963 . - . ID=Phyra96514.7;Parent=Phyra96514;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_82 . CDS 60038 60212 . - 0 ID=Phyra96514;Parent=Phyra96514;rank=6 scaffold_82 . exon 60038 60212 . - . ID=Phyra96514.6;Parent=Phyra96514;constitutive=1;ensembl_phase=2;rank=6 scaffold_82 . CDS 60281 60331 . - 0 ID=Phyra96514;Parent=Phyra96514;rank=5 scaffold_82 . exon 60281 60331 . - . ID=Phyra96514.5;Parent=Phyra96514;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_82 . CDS 60402 60577 . - 0 ID=Phyra96514;Parent=Phyra96514;rank=4 scaffold_82 . exon 60402 60577 . - . ID=Phyra96514.4;Parent=Phyra96514;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_82 . CDS 60698 61139 . - 0 ID=Phyra96514;Parent=Phyra96514;rank=3 scaffold_82 . exon 60698 61139 . - . ID=Phyra96514.3;Parent=Phyra96514;constitutive=1;ensembl_phase=2;rank=3 scaffold_82 . CDS 61198 61248 . - 0 ID=Phyra96514;Parent=Phyra96514;rank=2 scaffold_82 . exon 61198 61248 . - . ID=Phyra96514.2;Parent=Phyra96514;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_82 . CDS 61339 61484 . - 0 ID=Phyra96514;Parent=Phyra96514;rank=1 scaffold_82 . exon 61339 61484 . - . ID=Phyra96514.1;Parent=Phyra96514;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 . biological_region 72240 72242 0.999 + . logic_name=eponine scaffold_82 . biological_region 74500 74503 0.999 + . logic_name=eponine scaffold_82 . biological_region 74843 74847 0.999 - . logic_name=eponine scaffold_82 ensembl protein_coding_gene 68876 70926 . - . ID=Phyra83068;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000032;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 68876 70926 . - . ID=Phyra83068;Parent=Phyra83068;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 68876 68885 . - 0 ID=Phyra83068;Parent=Phyra83068;rank=6 scaffold_82 . exon 68876 68885 . - . ID=Phyra83068.6;Parent=Phyra83068;constitutive=1;ensembl_phase=2;rank=6 scaffold_82 . CDS 68957 69006 . - 0 ID=Phyra83068;Parent=Phyra83068;rank=5 scaffold_82 . exon 68957 69006 . - . ID=Phyra83068.5;Parent=Phyra83068;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_82 . CDS 69097 69286 . - 0 ID=Phyra83068;Parent=Phyra83068;rank=4 scaffold_82 . exon 69097 69286 . - . ID=Phyra83068.4;Parent=Phyra83068;constitutive=1;ensembl_phase=2;rank=4 scaffold_82 . CDS 69354 70002 . - 0 ID=Phyra83068;Parent=Phyra83068;rank=3 scaffold_82 . exon 69354 70002 . - . ID=Phyra83068.3;Parent=Phyra83068;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_82 . CDS 70142 70212 . - 0 ID=Phyra83068;Parent=Phyra83068;rank=2 scaffold_82 . exon 70142 70212 . - . ID=Phyra83068.2;Parent=Phyra83068;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 70478 70926 . - 0 ID=Phyra83068;Parent=Phyra83068;rank=1 scaffold_82 . exon 70478 70926 . - . ID=Phyra83068.1;Parent=Phyra83068;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 ensembl protein_coding_gene 71382 72383 . - . ID=Phyra83069;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000033;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 71382 72383 . - . ID=Phyra83069;Parent=Phyra83069;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 71382 72383 . - 0 ID=Phyra83069;Parent=Phyra83069;rank=1 scaffold_82 . exon 71382 72383 . - . ID=Phyra83069.1;Parent=Phyra83069;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 75413 82352 . + . ID=Phyra83071;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000035;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 75413 82352 . + . ID=Phyra83071;Parent=Phyra83071;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 75413 82281 . + 0 ID=Phyra83071;Parent=Phyra83071;rank=1 scaffold_82 . exon 75413 82281 . + . ID=Phyra83071.1;Parent=Phyra83071;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 . CDS 82319 82352 . + 0 ID=Phyra83071;Parent=Phyra83071;rank=2 scaffold_82 ensembl protein_coding_gene 73107 74347 . - . ID=Phyra96515;biotype=protein_coding;external_name=C_scaffold_82000018;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 73107 74347 . - . ID=Phyra96515;Parent=Phyra96515;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 73107 73234 . - 0 ID=Phyra96515;Parent=Phyra96515;rank=5 scaffold_82 . exon 73107 73234 . - . ID=Phyra96515.5;Parent=Phyra96515;constitutive=1;ensembl_phase=1;rank=5 scaffold_82 . CDS 73305 73454 . - 0 ID=Phyra96515;Parent=Phyra96515;rank=4 scaffold_82 . exon 73305 73454 . - . ID=Phyra96515.4;Parent=Phyra96515;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_82 . CDS 73521 73590 . - 0 ID=Phyra96515;Parent=Phyra96515;rank=3 scaffold_82 . exon 73521 73590 . - . ID=Phyra96515.3;Parent=Phyra96515;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_82 . CDS 73665 73693 . - 0 ID=Phyra96515;Parent=Phyra96515;rank=2 scaffold_82 . exon 73665 73693 . - . ID=Phyra96515.2;Parent=Phyra96515;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 73978 74347 . - 0 ID=Phyra96515;Parent=Phyra96515;rank=1 scaffold_82 . exon 73978 74347 . - . ID=Phyra96515.1;Parent=Phyra96515;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . repeat_region 83350 83357 . ? . description=dust scaffold_82 . repeat_region 84644 84697 . ? . description=trf scaffold_82 . repeat_region 85617 85638 . ? . description=trf scaffold_82 . repeat_region 87116 87123 . ? . description=dust scaffold_82 . exon 82319 82352 . + . ID=Phyra83071.2;Parent=Phyra83071;constitutive=1;ensembl_phase=2;rank=2 scaffold_82 ensembl protein_coding_gene 82934 84502 . - . ID=Phyra83072;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000036;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 82934 84502 . - . ID=Phyra83072;Parent=Phyra83072;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 82934 83977 . - 0 ID=Phyra83072;Parent=Phyra83072;rank=3 scaffold_82 . exon 82934 83977 . - . ID=Phyra83072.3;Parent=Phyra83072;constitutive=1;rank=3 scaffold_82 . CDS 84062 84197 . - 0 ID=Phyra83072;Parent=Phyra83072;rank=2 scaffold_82 . exon 84062 84197 . - . ID=Phyra83072.2;Parent=Phyra83072;constitutive=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 84393 84502 . - 0 ID=Phyra83072;Parent=Phyra83072;rank=1 scaffold_82 . exon 84393 84502 . - . ID=Phyra83072.1;Parent=Phyra83072;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 ensembl protein_coding_gene 85186 86190 . - . ID=Phyra83073;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000037;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 85186 86190 . - . ID=Phyra83073;Parent=Phyra83073;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 85186 86190 . - 0 ID=Phyra83073;Parent=Phyra83073;rank=1 scaffold_82 . exon 85186 86190 . - . ID=Phyra83073.1;Parent=Phyra83073;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 87244 88824 . - . ID=Phyra83074;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000038;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 87244 88824 . - . ID=Phyra83074;Parent=Phyra83074;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 87244 88824 . - 0 ID=Phyra83074;Parent=Phyra83074;rank=1 scaffold_82 . exon 87244 88824 . - . ID=Phyra83074.1;Parent=Phyra83074;constitutive=1;rank=1 scaffold_82 . biological_region 87772 87774 0.999 - . logic_name=eponine scaffold_82 . biological_region 87909 87910 0.999 - . logic_name=eponine scaffold_82 . biological_region 87966 87969 0.999 - . logic_name=eponine scaffold_82 . biological_region 88192 88192 0.999 + . logic_name=eponine scaffold_82 . biological_region 88551 88559 0.999 + . logic_name=eponine scaffold_82 . biological_region 88597 88600 0.999 - . logic_name=eponine scaffold_82 . biological_region 94296 94300 0.999 + . logic_name=eponine scaffold_82 ensembl protein_coding_gene 90561 94439 . + . ID=Phyra83075;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000039;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 90561 94439 . + . ID=Phyra83075;Parent=Phyra83075;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 90561 91099 . + 0 ID=Phyra83075;Parent=Phyra83075;rank=1 scaffold_82 . exon 90561 91099 . + . ID=Phyra83075.1;Parent=Phyra83075;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 . CDS 91211 92753 . + 0 ID=Phyra83075;Parent=Phyra83075;rank=2 scaffold_82 . exon 91211 92753 . + . ID=Phyra83075.2;Parent=Phyra83075;constitutive=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 92919 94439 . + 0 ID=Phyra83075;Parent=Phyra83075;rank=3 scaffold_82 . exon 92919 94439 . + . ID=Phyra83075.3;Parent=Phyra83075;constitutive=1;rank=3 scaffold_82 ensembl protein_coding_gene 94579 100891 . - . ID=Phyra83076;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000040;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 94579 100891 . - . ID=Phyra83076;Parent=Phyra83076;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 94579 95246 . - 0 ID=Phyra83076;Parent=Phyra83076;rank=4 scaffold_82 . exon 94579 95246 . - . ID=Phyra83076.4;Parent=Phyra83076;constitutive=1;ensembl_phase=1;rank=4 scaffold_82 . CDS 95410 95707 . - 0 ID=Phyra83076;Parent=Phyra83076;rank=3 scaffold_82 . exon 95410 95707 . - . ID=Phyra83076.3;Parent=Phyra83076;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_82 . CDS 95742 95872 . - 0 ID=Phyra83076;Parent=Phyra83076;rank=2 scaffold_82 . exon 95742 95872 . - . ID=Phyra83076.2;Parent=Phyra83076;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 95935 100891 . - 0 ID=Phyra83076;Parent=Phyra83076;rank=1 scaffold_82 . exon 95935 100891 . - . ID=Phyra83076.1;Parent=Phyra83076;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . repeat_region 101220 101228 . ? . description=dust scaffold_82 . repeat_region 102631 102639 . ? . description=dust scaffold_82 . repeat_region 103610 104747 . + . description=Polinton-1_PI scaffold_82 . repeat_region 105119 105132 . ? . description=dust scaffold_82 ensembl protein_coding_gene 101725 102165 . + . ID=Phyra83077;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000041;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 101725 102165 . + . ID=Phyra83077;Parent=Phyra83077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 101725 102165 . + 0 ID=Phyra83077;Parent=Phyra83077;rank=1 scaffold_82 . exon 101725 102165 . + . ID=Phyra83077.1;Parent=Phyra83077;constitutive=1;rank=1 scaffold_82 . biological_region 110185 110186 0.999 - . logic_name=eponine scaffold_82 . biological_region 110463 110463 0.999 + . logic_name=eponine scaffold_82 . repeat_region 110493 110527 . ? . description=trf scaffold_82 . biological_region 110643 110646 0.999 + . logic_name=eponine scaffold_82 . biological_region 113465 113466 0.999 + . logic_name=eponine scaffold_82 . biological_region 114005 114009 0.999 + . logic_name=eponine scaffold_82 . biological_region 114574 114575 0.999 - . logic_name=eponine scaffold_82 . repeat_region 115027 115069 . ? . description=trf scaffold_82 ensembl protein_coding_gene 109445 110161 . + . ID=Phyra83079;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000043;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 109445 110161 . + . ID=Phyra83079;Parent=Phyra83079;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 109445 110161 . + 0 ID=Phyra83079;Parent=Phyra83079;rank=1 scaffold_82 . exon 109445 110161 . + . ID=Phyra83079.1;Parent=Phyra83079;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 113604 114116 . + . ID=Phyra83081;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000045;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 113604 114116 . + . ID=Phyra83081;Parent=Phyra83081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 113604 114116 . + 0 ID=Phyra83081;Parent=Phyra83081;rank=1 scaffold_82 . exon 113604 114116 . + . ID=Phyra83081.1;Parent=Phyra83081;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 114670 117678 . + . ID=Phyra83082;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000046;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 114670 117678 . + . ID=Phyra83082;Parent=Phyra83082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 114670 117678 . + 0 ID=Phyra83082;Parent=Phyra83082;rank=1 scaffold_82 . exon 114670 117678 . + . ID=Phyra83082.1;Parent=Phyra83082;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 108196 109246 . - . ID=Phyra96518;biotype=protein_coding;external_name=C_scaffold_82000021;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 108196 109246 . - . ID=Phyra96518;Parent=Phyra96518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 108196 109101 . - 0 ID=Phyra96518;Parent=Phyra96518;rank=2 scaffold_82 . exon 108196 109101 . - . ID=Phyra96518.2;Parent=Phyra96518;constitutive=1;rank=2 scaffold_82 . CDS 109145 109246 . - 0 ID=Phyra96518;Parent=Phyra96518;rank=1 scaffold_82 . exon 109145 109246 . - . ID=Phyra96518.1;Parent=Phyra96518;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 110421 112068 . + . ID=Phyra96519;biotype=protein_coding;external_name=C_scaffold_82000022;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 110421 112068 . + . ID=Phyra96519;Parent=Phyra96519;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 110421 110717 . + 0 ID=Phyra96519;Parent=Phyra96519;rank=1 scaffold_82 . exon 110421 110717 . + . ID=Phyra96519.1;Parent=Phyra96519;constitutive=1;rank=1 scaffold_82 . CDS 110799 111077 . + 0 ID=Phyra96519;Parent=Phyra96519;rank=2 scaffold_82 . exon 110799 111077 . + . ID=Phyra96519.2;Parent=Phyra96519;constitutive=1;rank=2 scaffold_82 . CDS 111156 111279 . + 0 ID=Phyra96519;Parent=Phyra96519;rank=3 scaffold_82 . exon 111156 111279 . + . ID=Phyra96519.3;Parent=Phyra96519;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_82 . CDS 111349 111415 . + 0 ID=Phyra96519;Parent=Phyra96519;rank=4 scaffold_82 . exon 111349 111415 . + . ID=Phyra96519.4;Parent=Phyra96519;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_82 . CDS 111533 111975 . + 0 ID=Phyra96519;Parent=Phyra96519;rank=5 scaffold_82 . exon 111533 111975 . + . ID=Phyra96519.5;Parent=Phyra96519;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_82 . CDS 112058 112068 . + 0 ID=Phyra96519;Parent=Phyra96519;rank=6 scaffold_82 . exon 112058 112068 . + . ID=Phyra96519.6;Parent=Phyra96519;constitutive=1;ensembl_phase=1;rank=6 scaffold_82 . repeat_region 123822 123831 . ? . description=dust scaffold_82 ensembl protein_coding_gene 119361 120083 . - . ID=Phyra83083;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000047;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 119361 120083 . - . ID=Phyra83083;Parent=Phyra83083;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 119361 120083 . - 0 ID=Phyra83083;Parent=Phyra83083;rank=1 scaffold_82 . exon 119361 120083 . - . ID=Phyra83083.1;Parent=Phyra83083;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 121441 122925 . + . ID=Phyra83084;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000048;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 121441 122925 . + . ID=Phyra83084;Parent=Phyra83084;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 121441 122925 . + 0 ID=Phyra83084;Parent=Phyra83084;rank=1 scaffold_82 . exon 121441 122925 . + . ID=Phyra83084.1;Parent=Phyra83084;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 123321 124047 . - . ID=Phyra83085;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000049;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 123321 124047 . - . ID=Phyra83085;Parent=Phyra83085;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 123321 123779 . - 0 ID=Phyra83085;Parent=Phyra83085;rank=2 scaffold_82 . exon 123321 123779 . - . ID=Phyra83085.2;Parent=Phyra83085;constitutive=1;rank=2 scaffold_82 . CDS 123823 124047 . - 0 ID=Phyra83085;Parent=Phyra83085;rank=1 scaffold_82 . exon 123823 124047 . - . ID=Phyra83085.1;Parent=Phyra83085;constitutive=1;rank=1 scaffold_82 . repeat_region 130625 130674 . ? . description=trf scaffold_82 ensembl protein_coding_gene 130354 131106 . + . ID=Phyra83086;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000050;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 130354 131106 . + . ID=Phyra83086;Parent=Phyra83086;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 130354 131106 . + 0 ID=Phyra83086;Parent=Phyra83086;rank=1 scaffold_82 . exon 130354 131106 . + . ID=Phyra83086.1;Parent=Phyra83086;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 134445 136622 . + . ID=Phyra83087;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000051;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 134445 136622 . + . ID=Phyra83087;Parent=Phyra83087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 134445 134762 . + 0 ID=Phyra83087;Parent=Phyra83087;rank=1 scaffold_82 . exon 134445 134762 . + . ID=Phyra83087.1;Parent=Phyra83087;constitutive=1;rank=1 scaffold_82 . CDS 134829 136263 . + 0 ID=Phyra83087;Parent=Phyra83087;rank=2 scaffold_82 . exon 134829 136263 . + . ID=Phyra83087.2;Parent=Phyra83087;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_82 . CDS 136486 136622 . + 0 ID=Phyra83087;Parent=Phyra83087;rank=3 scaffold_82 . biological_region 139734 139736 0.999 - . logic_name=eponine scaffold_82 . biological_region 141943 141946 0.999 + . logic_name=eponine scaffold_82 . biological_region 143090 143092 0.999 - . logic_name=eponine scaffold_82 . biological_region 144050 144052 0.999 - . logic_name=eponine scaffold_82 . biological_region 145117 145119 0.999 + . logic_name=eponine scaffold_82 . exon 136486 136622 . + . ID=Phyra83087.3;Parent=Phyra83087;constitutive=1;ensembl_phase=1;rank=3 scaffold_82 ensembl protein_coding_gene 136689 138488 . - . ID=Phyra83088;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000052;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 136689 138488 . - . ID=Phyra83088;Parent=Phyra83088;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 136689 138488 . - 0 ID=Phyra83088;Parent=Phyra83088;rank=1 scaffold_82 . exon 136689 138488 . - . ID=Phyra83088.1;Parent=Phyra83088;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 139291 145491 . - . ID=Phyra96520;biotype=protein_coding;external_name=C_scaffold_82000023;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 139291 145491 . - . ID=Phyra96520;Parent=Phyra96520;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 139291 139617 . - 0 ID=Phyra96520;Parent=Phyra96520;rank=6 scaffold_82 . exon 139291 139617 . - . ID=Phyra96520.6;Parent=Phyra96520;constitutive=1;rank=6 scaffold_82 . CDS 139645 142176 . - 0 ID=Phyra96520;Parent=Phyra96520;rank=5 scaffold_82 . exon 139645 142176 . - . ID=Phyra96520.5;Parent=Phyra96520;constitutive=1;rank=5 scaffold_82 . CDS 142987 144094 . - 0 ID=Phyra96520;Parent=Phyra96520;rank=4 scaffold_82 . exon 142987 144094 . - . ID=Phyra96520.4;Parent=Phyra96520;constitutive=1;ensembl_phase=2;rank=4 scaffold_82 . CDS 144161 144849 . - 0 ID=Phyra96520;Parent=Phyra96520;rank=3 scaffold_82 . exon 144161 144849 . - . ID=Phyra96520.3;Parent=Phyra96520;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_82 . CDS 145003 145424 . - 0 ID=Phyra96520;Parent=Phyra96520;rank=2 scaffold_82 . exon 145003 145424 . - . ID=Phyra96520.2;Parent=Phyra96520;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 145488 145491 . - 0 ID=Phyra96520;Parent=Phyra96520;rank=1 scaffold_82 . exon 145488 145491 . - . ID=Phyra96520.1;Parent=Phyra96520;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . repeat_region 147009 147022 . ? . description=dust scaffold_82 . repeat_region 154444 154475 . ? . description=trf scaffold_82 ensembl protein_coding_gene 154563 157868 . - . ID=Phyra72078;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_82000004;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 154563 157868 . - . ID=Phyra72078;Parent=Phyra72078;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 154563 157868 . - 0 ID=Phyra72078;Parent=Phyra72078;rank=1 scaffold_82 . exon 154563 157868 . - . ID=Phyra72078.1;Parent=Phyra72078;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 146372 146854 . + . ID=Phyra83090;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000054;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 146372 146854 . + . ID=Phyra83090;Parent=Phyra83090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 146372 146854 . + 0 ID=Phyra83090;Parent=Phyra83090;rank=1 scaffold_82 . exon 146372 146854 . + . ID=Phyra83090.1;Parent=Phyra83090;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 147780 150670 . + . ID=Phyra83091;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000055;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 147780 150670 . + . ID=Phyra83091;Parent=Phyra83091;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 147780 148255 . + 0 ID=Phyra83091;Parent=Phyra83091;rank=1 scaffold_82 . exon 147780 148255 . + . ID=Phyra83091.1;Parent=Phyra83091;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 . CDS 148690 149554 . + 0 ID=Phyra83091;Parent=Phyra83091;rank=2 scaffold_82 . exon 148690 149554 . + . ID=Phyra83091.2;Parent=Phyra83091;constitutive=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 149778 150013 . + 0 ID=Phyra83091;Parent=Phyra83091;rank=3 scaffold_82 . exon 149778 150013 . + . ID=Phyra83091.3;Parent=Phyra83091;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_82 . CDS 150156 150604 . + 0 ID=Phyra83091;Parent=Phyra83091;rank=4 scaffold_82 . exon 150156 150604 . + . ID=Phyra83091.4;Parent=Phyra83091;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_82 . CDS 150636 150670 . + 0 ID=Phyra83091;Parent=Phyra83091;rank=5 scaffold_82 . exon 150636 150670 . + . ID=Phyra83091.5;Parent=Phyra83091;constitutive=1;ensembl_phase=1;rank=5 scaffold_82 ensembl protein_coding_gene 150773 152607 . - . ID=Phyra83092;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000056;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 150773 152607 . - . ID=Phyra83092;Parent=Phyra83092;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 150773 151002 . - 0 ID=Phyra83092;Parent=Phyra83092;rank=6 scaffold_82 . exon 150773 151002 . - . ID=Phyra83092.6;Parent=Phyra83092;constitutive=1;ensembl_phase=1;rank=6 scaffold_82 . CDS 151082 151318 . - 0 ID=Phyra83092;Parent=Phyra83092;rank=5 scaffold_82 . exon 151082 151318 . - . ID=Phyra83092.5;Parent=Phyra83092;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_82 . CDS 151393 151489 . - 0 ID=Phyra83092;Parent=Phyra83092;rank=4 scaffold_82 . exon 151393 151489 . - . ID=Phyra83092.4;Parent=Phyra83092;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_82 . CDS 151551 151979 . - 0 ID=Phyra83092;Parent=Phyra83092;rank=3 scaffold_82 . exon 151551 151979 . - . ID=Phyra83092.3;Parent=Phyra83092;constitutive=1;rank=3 scaffold_82 . CDS 152044 152155 . - 0 ID=Phyra83092;Parent=Phyra83092;rank=2 scaffold_82 . exon 152044 152155 . - . ID=Phyra83092.2;Parent=Phyra83092;constitutive=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 152228 152607 . - 0 ID=Phyra83092;Parent=Phyra83092;rank=1 scaffold_82 . exon 152228 152607 . - . ID=Phyra83092.1;Parent=Phyra83092;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 ensembl protein_coding_gene 153051 154125 . - . ID=Phyra83093;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000057;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 153051 154125 . - . ID=Phyra83093;Parent=Phyra83093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 153051 153766 . - 0 ID=Phyra83093;Parent=Phyra83093;rank=2 scaffold_82 . exon 153051 153766 . - . ID=Phyra83093.2;Parent=Phyra83093;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 153843 154125 . - 0 ID=Phyra83093;Parent=Phyra83093;rank=1 scaffold_82 . exon 153843 154125 . - . ID=Phyra83093.1;Parent=Phyra83093;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . biological_region 155902 155903 0.999 + . logic_name=eponine scaffold_82 . biological_region 159900 159903 0.999 + . logic_name=eponine scaffold_82 . biological_region 162295 162299 0.999 - . logic_name=eponine scaffold_82 . biological_region 162383 162386 0.999 + . logic_name=eponine scaffold_82 ensembl protein_coding_gene 157982 158408 . - . ID=Phyra83095;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000059;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 157982 158408 . - . ID=Phyra83095;Parent=Phyra83095;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 157982 158059 . - 0 ID=Phyra83095;Parent=Phyra83095;rank=2 scaffold_82 . exon 157982 158059 . - . ID=Phyra83095.2;Parent=Phyra83095;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 158099 158408 . - 0 ID=Phyra83095;Parent=Phyra83095;rank=1 scaffold_82 . exon 158099 158408 . - . ID=Phyra83095.1;Parent=Phyra83095;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 ensembl protein_coding_gene 161951 163069 . - . ID=Phyra83096;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000060;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 161951 163069 . - . ID=Phyra83096;Parent=Phyra83096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 161951 161982 . - 0 ID=Phyra83096;Parent=Phyra83096;rank=3 scaffold_82 . exon 161951 161982 . - . ID=Phyra83096.3;Parent=Phyra83096;constitutive=1;ensembl_phase=1;rank=3 scaffold_82 . CDS 162105 162971 . - 0 ID=Phyra83096;Parent=Phyra83096;rank=2 scaffold_82 . exon 162105 162971 . - . ID=Phyra83096.2;Parent=Phyra83096;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 163060 163069 . - 0 ID=Phyra83096;Parent=Phyra83096;rank=1 scaffold_82 . exon 163060 163069 . - . ID=Phyra83096.1;Parent=Phyra83096;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 ensembl protein_coding_gene 164796 166381 . - . ID=Phyra83097;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000061;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 164796 166381 . - . ID=Phyra83097;Parent=Phyra83097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 164796 164900 . - 0 ID=Phyra83097;Parent=Phyra83097;rank=5 scaffold_82 . exon 164796 164900 . - . ID=Phyra83097.5;Parent=Phyra83097;constitutive=1;rank=5 scaffold_82 . CDS 164970 165175 . - 0 ID=Phyra83097;Parent=Phyra83097;rank=4 scaffold_82 . exon 164970 165175 . - . ID=Phyra83097.4;Parent=Phyra83097;constitutive=1;ensembl_phase=1;rank=4 scaffold_82 . CDS 165239 165369 . - 0 ID=Phyra83097;Parent=Phyra83097;rank=3 scaffold_82 . exon 165239 165369 . - . ID=Phyra83097.3;Parent=Phyra83097;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_82 . CDS 165433 165656 . - 0 ID=Phyra83097;Parent=Phyra83097;rank=2 scaffold_82 . exon 165433 165656 . - . ID=Phyra83097.2;Parent=Phyra83097;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_82 . CDS 165848 166381 . - 0 ID=Phyra83097;Parent=Phyra83097;rank=1 scaffold_82 . repeat_region 165771 165800 . ? . description=dust scaffold_82 . repeat_region 166699 166706 . ? . description=dust scaffold_82 ensembl protein_coding_gene 174635 175639 . + . ID=Phyra72079;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_82000005;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 174635 175639 . + . ID=Phyra72079;Parent=Phyra72079;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 174635 175639 . + 0 ID=Phyra72079;Parent=Phyra72079;rank=1 scaffold_82 . exon 174635 175639 . + . ID=Phyra72079.1;Parent=Phyra72079;constitutive=1;rank=1 scaffold_82 . exon 165848 166381 . - . ID=Phyra83097.1;Parent=Phyra83097;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 168708 170204 . - . ID=Phyra83098;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000062;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 168708 170204 . - . ID=Phyra83098;Parent=Phyra83098;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 168708 170204 . - 0 ID=Phyra83098;Parent=Phyra83098;rank=1 scaffold_82 . exon 168708 170204 . - . ID=Phyra83098.1;Parent=Phyra83098;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 171881 173575 . - . ID=Phyra83099;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000063;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 171881 173575 . - . ID=Phyra83099;Parent=Phyra83099;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 171881 173575 . - 0 ID=Phyra83099;Parent=Phyra83099;rank=1 scaffold_82 . exon 171881 173575 . - . ID=Phyra83099.1;Parent=Phyra83099;constitutive=1;rank=1 scaffold_82 . biological_region 175294 175298 0.999 - . logic_name=eponine scaffold_82 . biological_region 175382 175384 0.999 + . logic_name=eponine scaffold_82 . repeat_region 180486 180536 . ? . description=trf scaffold_82 . repeat_region 180531 180559 . ? . description=trf scaffold_82 . repeat_region 181699 192434 . ? . description=dust scaffold_82 . repeat_region 192435 193669 . + . description=GypsyPi-1c_I-int scaffold_82 . repeat_region 193915 194547 . ? . description=dust scaffold_82 ensembl protein_coding_gene 192771 193336 . + . ID=Phyra83101;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000065;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 192771 193336 . + . ID=Phyra83101;Parent=Phyra83101;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 192771 193272 . + 0 ID=Phyra83101;Parent=Phyra83101;rank=1 scaffold_82 . exon 192771 193272 . + . ID=Phyra83101.1;Parent=Phyra83101;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . CDS 193332 193336 . + 0 ID=Phyra83101;Parent=Phyra83101;rank=2 scaffold_82 . exon 193332 193336 . + . ID=Phyra83101.2;Parent=Phyra83101;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . biological_region 195226 195228 0.999 + . logic_name=eponine scaffold_82 . biological_region 198370 198376 0.999 - . logic_name=eponine scaffold_82 ensembl protein_coding_gene 195196 195810 . - . ID=Phyra83102;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000066;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 195196 195810 . - . ID=Phyra83102;Parent=Phyra83102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 195196 195736 . - 0 ID=Phyra83102;Parent=Phyra83102;rank=2 scaffold_82 . exon 195196 195736 . - . ID=Phyra83102.2;Parent=Phyra83102;constitutive=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 195785 195810 . - 0 ID=Phyra83102;Parent=Phyra83102;rank=1 scaffold_82 . exon 195785 195810 . - . ID=Phyra83102.1;Parent=Phyra83102;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 ensembl protein_coding_gene 198132 198467 . + . ID=Phyra83103;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000067;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 198132 198467 . + . ID=Phyra83103;Parent=Phyra83103;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 198132 198467 . + 0 ID=Phyra83103;Parent=Phyra83103;rank=1 scaffold_82 . exon 198132 198467 . + . ID=Phyra83103.1;Parent=Phyra83103;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 199883 200430 . - . ID=Phyra83104;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_82000068;logic_name=jgi_phyra1 scaffold_82 ensembl transcript 199883 200430 . - . ID=Phyra83104;Parent=Phyra83104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_82 . CDS 199883 200260 . - 0 ID=Phyra83104;Parent=Phyra83104;rank=2 scaffold_82 . exon 199883 200260 . - . ID=Phyra83104.2;Parent=Phyra83104;constitutive=1;rank=2 scaffold_82 . CDS 200326 200430 . - 0 ID=Phyra83104;Parent=Phyra83104;rank=1 scaffold_82 . exon 200326 200430 . - . ID=Phyra83104.1;Parent=Phyra83104;constitutive=1;rank=1 scaffold_82 . repeat_region 205676 208204 . ? . description=dust scaffold_82 . repeat_region 208393 208404 . ? . description=dust scaffold_82 . repeat_region 209258 209307 . ? . description=dust scaffold_82 . repeat_region 210769 210818 . ? . description=dust scaffold_82 . repeat_region 213312 213320 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_81 1 216085 scaffold_81 . biological_region 105 109 0.999 + . logic_name=eponine scaffold_81 . biological_region 785 786 0.999 - . logic_name=eponine scaffold_81 . repeat_region 1164 1171 . ? . description=dust scaffold_81 . repeat_region 1183 1211 . ? . description=trf scaffold_81 . repeat_region 1584 1639 . ? . description=trf scaffold_81 . repeat_region 2996 3020 . ? . description=trf scaffold_81 . repeat_region 3182 4316 . ? . description=dust scaffold_81 . biological_region 4519 4522 0.999 - . logic_name=eponine scaffold_81 . biological_region 4607 4609 0.999 - . logic_name=eponine scaffold_81 . repeat_region 4761 4797 . ? . description=trf scaffold_81 . biological_region 7927 7927 0.999 + . logic_name=eponine scaffold_81 . biological_region 9225 9236 0.999 - . logic_name=eponine scaffold_81 . biological_region 9421 9422 0.999 - . logic_name=eponine scaffold_81 ensembl protein_coding_gene 6827 8135 . + . ID=Phyra53570;biotype=protein_coding;external_name=gwEuk.81.9.1;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 6827 8135 . + . ID=Phyra53570;Parent=Phyra53570;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 6827 6953 . + 0 ID=Phyra53570;Parent=Phyra53570;rank=1 scaffold_81 . exon 6827 6953 . + . ID=Phyra53570.1;Parent=Phyra53570;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 . CDS 7013 7100 . + 0 ID=Phyra53570;Parent=Phyra53570;rank=2 scaffold_81 . exon 7013 7100 . + . ID=Phyra53570.2;Parent=Phyra53570;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_81 . CDS 7166 8135 . + 0 ID=Phyra53570;Parent=Phyra53570;rank=3 scaffold_81 . exon 7166 8135 . + . ID=Phyra53570.3;Parent=Phyra53570;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 ensembl protein_coding_gene 262 1089 . + . ID=Phyra82964;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000001;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 262 1089 . + . ID=Phyra82964;Parent=Phyra82964;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 262 1089 . + 0 ID=Phyra82964;Parent=Phyra82964;rank=1 scaffold_81 . exon 262 1089 . + . ID=Phyra82964.1;Parent=Phyra82964;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 2078 2912 . + . ID=Phyra82965;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000002;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 2078 2912 . + . ID=Phyra82965;Parent=Phyra82965;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 2078 2507 . + 0 ID=Phyra82965;Parent=Phyra82965;rank=1 scaffold_81 . exon 2078 2507 . + . ID=Phyra82965.1;Parent=Phyra82965;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 . CDS 2548 2912 . + 0 ID=Phyra82965;Parent=Phyra82965;rank=2 scaffold_81 . exon 2548 2912 . + . ID=Phyra82965.2;Parent=Phyra82965;constitutive=1;ensembl_phase=1;rank=2 scaffold_81 ensembl protein_coding_gene 5165 5998 . - . ID=Phyra82966;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000003;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 5165 5998 . - . ID=Phyra82966;Parent=Phyra82966;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 5165 5998 . - 0 ID=Phyra82966;Parent=Phyra82966;rank=1 scaffold_81 . exon 5165 5998 . - . ID=Phyra82966.1;Parent=Phyra82966;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 8310 9472 . - . ID=Phyra96479;biotype=protein_coding;external_name=C_scaffold_81000003;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 8310 9472 . - . ID=Phyra96479;Parent=Phyra96479;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 8310 8335 . - 0 ID=Phyra96479;Parent=Phyra96479;rank=5 scaffold_81 . exon 8310 8335 . - . ID=Phyra96479.5;Parent=Phyra96479;constitutive=1;ensembl_phase=1;rank=5 scaffold_81 . CDS 8413 8668 . - 0 ID=Phyra96479;Parent=Phyra96479;rank=4 scaffold_81 . exon 8413 8668 . - . ID=Phyra96479.4;Parent=Phyra96479;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_81 . CDS 8733 8852 . - 0 ID=Phyra96479;Parent=Phyra96479;rank=3 scaffold_81 . exon 8733 8852 . - . ID=Phyra96479.3;Parent=Phyra96479;constitutive=1;rank=3 scaffold_81 . CDS 8909 9225 . - 0 ID=Phyra96479;Parent=Phyra96479;rank=2 scaffold_81 . exon 8909 9225 . - . ID=Phyra96479.2;Parent=Phyra96479;constitutive=1;ensembl_phase=1;rank=2 scaffold_81 . CDS 9298 9472 . - 0 ID=Phyra96479;Parent=Phyra96479;rank=1 scaffold_81 . exon 9298 9472 . - . ID=Phyra96479.1;Parent=Phyra96479;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 ensembl protein_coding_gene 13140 14018 . + . ID=Phyra82969;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000006;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 13140 14018 . + . ID=Phyra82969;Parent=Phyra82969;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 13140 14018 . + 0 ID=Phyra82969;Parent=Phyra82969;rank=1 scaffold_81 . exon 13140 14018 . + . ID=Phyra82969.1;Parent=Phyra82969;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 17730 23513 . - . ID=Phyra82971;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000008;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 17730 23513 . - . ID=Phyra82971;Parent=Phyra82971;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 17730 23513 . - 0 ID=Phyra82971;Parent=Phyra82971;rank=1 scaffold_81 . exon 17730 23513 . - . ID=Phyra82971.1;Parent=Phyra82971;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 14399 16680 . - . ID=Phyra96481;biotype=protein_coding;external_name=C_scaffold_81000005;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 14399 16680 . - . ID=Phyra96481;Parent=Phyra96481;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 14399 14626 . - 0 ID=Phyra96481;Parent=Phyra96481;rank=12 scaffold_81 . exon 14399 14626 . - . ID=Phyra96481.12;Parent=Phyra96481;constitutive=1;rank=12 scaffold_81 . CDS 14716 14781 . - 0 ID=Phyra96481;Parent=Phyra96481;rank=11 scaffold_81 . exon 14716 14781 . - . ID=Phyra96481.11;Parent=Phyra96481;constitutive=1;rank=11 scaffold_81 . CDS 14855 14915 . - 0 ID=Phyra96481;Parent=Phyra96481;rank=10 scaffold_81 . exon 14855 14915 . - . ID=Phyra96481.10;Parent=Phyra96481;constitutive=1;ensembl_phase=2;rank=10 scaffold_81 . CDS 14985 15053 . - 0 ID=Phyra96481;Parent=Phyra96481;rank=9 scaffold_81 . exon 14985 15053 . - . ID=Phyra96481.9;Parent=Phyra96481;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_81 . CDS 15129 15235 . - 0 ID=Phyra96481;Parent=Phyra96481;rank=8 scaffold_81 . exon 15129 15235 . - . ID=Phyra96481.8;Parent=Phyra96481;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_81 . CDS 15307 15402 . - 0 ID=Phyra96481;Parent=Phyra96481;rank=7 scaffold_81 . exon 15307 15402 . - . ID=Phyra96481.7;Parent=Phyra96481;constitutive=1;rank=7 scaffold_81 . CDS 15475 15567 . - 0 ID=Phyra96481;Parent=Phyra96481;rank=6 scaffold_81 . exon 15475 15567 . - . ID=Phyra96481.6;Parent=Phyra96481;constitutive=1;rank=6 scaffold_81 . CDS 15632 16096 . - 0 ID=Phyra96481;Parent=Phyra96481;rank=5 scaffold_81 . exon 15632 16096 . - . ID=Phyra96481.5;Parent=Phyra96481;constitutive=1;rank=5 scaffold_81 . CDS 16159 16232 . - 0 ID=Phyra96481;Parent=Phyra96481;rank=4 scaffold_81 . exon 16159 16232 . - . ID=Phyra96481.4;Parent=Phyra96481;constitutive=1;ensembl_phase=1;rank=4 scaffold_81 . CDS 16302 16330 . - 0 ID=Phyra96481;Parent=Phyra96481;rank=3 scaffold_81 . exon 16302 16330 . - . ID=Phyra96481.3;Parent=Phyra96481;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_81 . CDS 16393 16463 . - 0 ID=Phyra96481;Parent=Phyra96481;rank=2 scaffold_81 . exon 16393 16463 . - . ID=Phyra96481.2;Parent=Phyra96481;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_81 . CDS 16540 16680 . - 0 ID=Phyra96481;Parent=Phyra96481;rank=1 scaffold_81 . exon 16540 16680 . - . ID=Phyra96481.1;Parent=Phyra96481;constitutive=1;rank=1 scaffold_81 . biological_region 20533 20533 0.999 - . logic_name=eponine scaffold_81 . repeat_region 23607 23615 . ? . description=dust scaffold_81 . repeat_region 23986 23993 . ? . description=dust scaffold_81 . biological_region 24967 24969 0.999 + . logic_name=eponine scaffold_81 . biological_region 27761 27763 0.999 - . logic_name=eponine scaffold_81 ensembl protein_coding_gene 25486 31320 . - . ID=Phyra82972;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000009;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 25486 31320 . - . ID=Phyra82972;Parent=Phyra82972;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 25486 31320 . - 0 ID=Phyra82972;Parent=Phyra82972;rank=1 scaffold_81 . exon 25486 31320 . - . ID=Phyra82972.1;Parent=Phyra82972;constitutive=1;rank=1 scaffold_81 . repeat_region 31474 31501 . ? . description=trf scaffold_81 . repeat_region 32411 32444 . ? . description=trf scaffold_81 . repeat_region 33625 33658 . ? . description=trf scaffold_81 ensembl protein_coding_gene 34124 34771 . + . ID=Phyra82973;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000010;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 34124 34771 . + . ID=Phyra82973;Parent=Phyra82973;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 34124 34411 . + 0 ID=Phyra82973;Parent=Phyra82973;rank=1 scaffold_81 . exon 34124 34411 . + . ID=Phyra82973.1;Parent=Phyra82973;constitutive=1;rank=1 scaffold_81 . CDS 34438 34559 . + 0 ID=Phyra82973;Parent=Phyra82973;rank=2 scaffold_81 . exon 34438 34559 . + . ID=Phyra82973.2;Parent=Phyra82973;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_81 . CDS 34579 34771 . + 0 ID=Phyra82973;Parent=Phyra82973;rank=3 scaffold_81 . exon 34579 34771 . + . ID=Phyra82973.3;Parent=Phyra82973;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 ensembl protein_coding_gene 35750 39992 . + . ID=Phyra82974;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000011;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 35750 39992 . + . ID=Phyra82974;Parent=Phyra82974;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 35750 39961 . + 0 ID=Phyra82974;Parent=Phyra82974;rank=1 scaffold_81 . exon 35750 39961 . + . ID=Phyra82974.1;Parent=Phyra82974;constitutive=1;rank=1 scaffold_81 . CDS 39987 39992 . + 0 ID=Phyra82974;Parent=Phyra82974;rank=2 scaffold_81 . repeat_region 40075 40124 . ? . description=dust scaffold_81 . biological_region 44435 44439 0.999 - . logic_name=eponine scaffold_81 . repeat_region 44636 44643 . ? . description=dust scaffold_81 . biological_region 46973 46974 0.999 - . logic_name=eponine scaffold_81 . biological_region 47030 47034 0.999 + . logic_name=eponine scaffold_81 . exon 39987 39992 . + . ID=Phyra82974.2;Parent=Phyra82974;constitutive=1;rank=2 scaffold_81 ensembl protein_coding_gene 40983 42127 . - . ID=Phyra82975;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000012;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 40983 42127 . - . ID=Phyra82975;Parent=Phyra82975;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 40983 41024 . - 0 ID=Phyra82975;Parent=Phyra82975;rank=2 scaffold_81 . exon 40983 41024 . - . ID=Phyra82975.2;Parent=Phyra82975;constitutive=1;rank=2 scaffold_81 . CDS 41051 42127 . - 0 ID=Phyra82975;Parent=Phyra82975;rank=1 scaffold_81 . exon 41051 42127 . - . ID=Phyra82975.1;Parent=Phyra82975;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 43341 44577 . - . ID=Phyra82976;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000013;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 43341 44577 . - . ID=Phyra82976;Parent=Phyra82976;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 43341 43646 . - 0 ID=Phyra82976;Parent=Phyra82976;rank=3 scaffold_81 . exon 43341 43646 . - . ID=Phyra82976.3;Parent=Phyra82976;constitutive=1;rank=3 scaffold_81 . CDS 43692 44147 . - 0 ID=Phyra82976;Parent=Phyra82976;rank=2 scaffold_81 . exon 43692 44147 . - . ID=Phyra82976.2;Parent=Phyra82976;constitutive=1;rank=2 scaffold_81 . CDS 44212 44577 . - 0 ID=Phyra82976;Parent=Phyra82976;rank=1 scaffold_81 . exon 44212 44577 . - . ID=Phyra82976.1;Parent=Phyra82976;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 45603 50574 . + . ID=Phyra82977;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000014;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 45603 50574 . + . ID=Phyra82977;Parent=Phyra82977;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 45603 49353 . + 0 ID=Phyra82977;Parent=Phyra82977;rank=1 scaffold_81 . exon 45603 49353 . + . ID=Phyra82977.1;Parent=Phyra82977;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 . CDS 49418 50574 . + 0 ID=Phyra82977;Parent=Phyra82977;rank=2 scaffold_81 ensembl protein_coding_gene 50677 51450 . + . ID=Phyra72070;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_81000001;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 50677 51450 . + . ID=Phyra72070;Parent=Phyra72070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 50677 51450 . + 0 ID=Phyra72070;Parent=Phyra72070;rank=1 scaffold_81 . exon 50677 51450 . + . ID=Phyra72070.1;Parent=Phyra72070;constitutive=1;rank=1 scaffold_81 . exon 49418 50574 . + . ID=Phyra82977.2;Parent=Phyra82977;constitutive=1;ensembl_phase=1;rank=2 scaffold_81 ensembl protein_coding_gene 51592 53146 . - . ID=Phyra82979;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000016;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 51592 53146 . - . ID=Phyra82979;Parent=Phyra82979;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 51592 51762 . - 0 ID=Phyra82979;Parent=Phyra82979;rank=3 scaffold_81 . exon 51592 51762 . - . ID=Phyra82979.3;Parent=Phyra82979;constitutive=1;rank=3 scaffold_81 . CDS 51977 52131 . - 0 ID=Phyra82979;Parent=Phyra82979;rank=2 scaffold_81 . exon 51977 52131 . - . ID=Phyra82979.2;Parent=Phyra82979;constitutive=1;ensembl_phase=1;rank=2 scaffold_81 . CDS 52216 53146 . - 0 ID=Phyra82979;Parent=Phyra82979;rank=1 scaffold_81 . exon 52216 53146 . - . ID=Phyra82979.1;Parent=Phyra82979;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 ensembl protein_coding_gene 53249 54048 . + . ID=Phyra82980;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000017;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 53249 54048 . + . ID=Phyra82980;Parent=Phyra82980;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 53249 53956 . + 0 ID=Phyra82980;Parent=Phyra82980;rank=1 scaffold_81 . exon 53249 53956 . + . ID=Phyra82980.1;Parent=Phyra82980;constitutive=1;rank=1 scaffold_81 . CDS 54007 54048 . + 0 ID=Phyra82980;Parent=Phyra82980;rank=2 scaffold_81 . exon 54007 54048 . + . ID=Phyra82980.2;Parent=Phyra82980;constitutive=1;rank=2 scaffold_81 ensembl protein_coding_gene 56267 57679 . + . ID=Phyra82981;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000018;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 56267 57679 . + . ID=Phyra82981;Parent=Phyra82981;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 56267 57679 . + 0 ID=Phyra82981;Parent=Phyra82981;rank=1 scaffold_81 . exon 56267 57679 . + . ID=Phyra82981.1;Parent=Phyra82981;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 57932 58898 . - . ID=Phyra82982;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000019;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 57932 58898 . - . ID=Phyra82982;Parent=Phyra82982;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 57932 58211 . - 0 ID=Phyra82982;Parent=Phyra82982;rank=5 scaffold_81 . exon 57932 58211 . - . ID=Phyra82982.5;Parent=Phyra82982;constitutive=1;ensembl_phase=2;rank=5 scaffold_81 . CDS 58275 58477 . - 0 ID=Phyra82982;Parent=Phyra82982;rank=4 scaffold_81 . exon 58275 58477 . - . ID=Phyra82982.4;Parent=Phyra82982;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_81 . CDS 58532 58610 . - 0 ID=Phyra82982;Parent=Phyra82982;rank=3 scaffold_81 . exon 58532 58610 . - . ID=Phyra82982.3;Parent=Phyra82982;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 . CDS 58677 58843 . - 0 ID=Phyra82982;Parent=Phyra82982;rank=2 scaffold_81 . exon 58677 58843 . - . ID=Phyra82982.2;Parent=Phyra82982;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_81 . CDS 58875 58898 . - 0 ID=Phyra82982;Parent=Phyra82982;rank=1 scaffold_81 . exon 58875 58898 . - . ID=Phyra82982.1;Parent=Phyra82982;constitutive=1;rank=1 scaffold_81 . biological_region 59411 59419 0.999 + . logic_name=eponine scaffold_81 . biological_region 59425 59427 0.999 + . logic_name=eponine scaffold_81 . biological_region 59454 59460 0.999 + . logic_name=eponine scaffold_81 . biological_region 59460 59461 0.999 - . logic_name=eponine scaffold_81 . biological_region 59507 59513 0.999 + . logic_name=eponine scaffold_81 . biological_region 59508 59517 0.999 - . logic_name=eponine scaffold_81 . biological_region 59560 59565 0.999 - . logic_name=eponine scaffold_81 . repeat_region 60684 60691 . ? . description=dust scaffold_81 . biological_region 63596 63597 0.999 + . logic_name=eponine scaffold_81 . biological_region 65671 65671 0.999 - . logic_name=eponine scaffold_81 . biological_region 68079 68085 0.999 - . logic_name=eponine scaffold_81 ensembl protein_coding_gene 59248 60390 . + . ID=Phyra82983;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000020;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 59248 60390 . + . ID=Phyra82983;Parent=Phyra82983;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 59248 60390 . + 0 ID=Phyra82983;Parent=Phyra82983;rank=1 scaffold_81 . exon 59248 60390 . + . ID=Phyra82983.1;Parent=Phyra82983;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 61813 69414 . - . ID=Phyra82984;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000021;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 61813 69414 . - . ID=Phyra82984;Parent=Phyra82984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 61813 61871 . - 0 ID=Phyra82984;Parent=Phyra82984;rank=3 scaffold_81 . exon 61813 61871 . - . ID=Phyra82984.3;Parent=Phyra82984;constitutive=1;ensembl_phase=1;rank=3 scaffold_81 . CDS 61945 68338 . - 0 ID=Phyra82984;Parent=Phyra82984;rank=2 scaffold_81 . exon 61945 68338 . - . ID=Phyra82984.2;Parent=Phyra82984;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_81 . CDS 68398 69414 . - 0 ID=Phyra82984;Parent=Phyra82984;rank=1 scaffold_81 . exon 68398 69414 . - . ID=Phyra82984.1;Parent=Phyra82984;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 69767 76653 . + . ID=Phyra82985;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000022;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 69767 76653 . + . ID=Phyra82985;Parent=Phyra82985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 69767 70696 . + 0 ID=Phyra82985;Parent=Phyra82985;rank=1 scaffold_81 . exon 69767 70696 . + . ID=Phyra82985.1;Parent=Phyra82985;constitutive=1;rank=1 scaffold_81 . CDS 70769 71894 . + 0 ID=Phyra82985;Parent=Phyra82985;rank=2 scaffold_81 . exon 70769 71894 . + . ID=Phyra82985.2;Parent=Phyra82985;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_81 . CDS 71943 71964 . + 0 ID=Phyra82985;Parent=Phyra82985;rank=3 scaffold_81 . exon 71943 71964 . + . ID=Phyra82985.3;Parent=Phyra82985;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_81 . CDS 72078 76653 . + 0 ID=Phyra82985;Parent=Phyra82985;rank=4 scaffold_81 . exon 72078 76653 . + . ID=Phyra82985.4;Parent=Phyra82985;constitutive=1;ensembl_phase=2;rank=4 scaffold_81 ensembl protein_coding_gene 78056 79564 . + . ID=Phyra82986;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000023;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 78056 79564 . + . ID=Phyra82986;Parent=Phyra82986;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 78056 79564 . + 0 ID=Phyra82986;Parent=Phyra82986;rank=1 scaffold_81 . exon 78056 79564 . + . ID=Phyra82986.1;Parent=Phyra82986;constitutive=1;rank=1 scaffold_81 . repeat_region 83307 83314 . ? . description=dust scaffold_81 . biological_region 83549 83550 0.999 + . logic_name=eponine scaffold_81 . biological_region 86714 86719 0.999 + . logic_name=eponine scaffold_81 ensembl protein_coding_gene 80753 82267 . + . ID=Phyra82987;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000024;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 80753 82267 . + . ID=Phyra82987;Parent=Phyra82987;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 80753 82267 . + 0 ID=Phyra82987;Parent=Phyra82987;rank=1 scaffold_81 . exon 80753 82267 . + . ID=Phyra82987.1;Parent=Phyra82987;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 82677 84131 . - . ID=Phyra82988;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000025;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 82677 84131 . - . ID=Phyra82988;Parent=Phyra82988;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 82677 82760 . - 0 ID=Phyra82988;Parent=Phyra82988;rank=4 scaffold_81 . exon 82677 82760 . - . ID=Phyra82988.4;Parent=Phyra82988;constitutive=1;rank=4 scaffold_81 . CDS 82825 83193 . - 0 ID=Phyra82988;Parent=Phyra82988;rank=3 scaffold_81 . exon 82825 83193 . - . ID=Phyra82988.3;Parent=Phyra82988;constitutive=1;rank=3 scaffold_81 . CDS 83222 83277 . - 0 ID=Phyra82988;Parent=Phyra82988;rank=2 scaffold_81 . exon 83222 83277 . - . ID=Phyra82988.2;Parent=Phyra82988;constitutive=1;ensembl_phase=1;rank=2 scaffold_81 . CDS 83345 84131 . - 0 ID=Phyra82988;Parent=Phyra82988;rank=1 scaffold_81 . exon 83345 84131 . - . ID=Phyra82988.1;Parent=Phyra82988;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 ensembl protein_coding_gene 84932 86428 . - . ID=Phyra82989;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000026;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 84932 86428 . - . ID=Phyra82989;Parent=Phyra82989;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 84932 86428 . - 0 ID=Phyra82989;Parent=Phyra82989;rank=1 scaffold_81 . exon 84932 86428 . - . ID=Phyra82989.1;Parent=Phyra82989;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 87630 92340 . - . ID=Phyra82990;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000027;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 87630 92340 . - . ID=Phyra82990;Parent=Phyra82990;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 87630 87788 . - 0 ID=Phyra82990;Parent=Phyra82990;rank=6 scaffold_81 . exon 87630 87788 . - . ID=Phyra82990.6;Parent=Phyra82990;constitutive=1;rank=6 scaffold_81 . CDS 87831 88280 . - 0 ID=Phyra82990;Parent=Phyra82990;rank=5 scaffold_81 . exon 87831 88280 . - . ID=Phyra82990.5;Parent=Phyra82990;constitutive=1;rank=5 scaffold_81 . CDS 88504 89662 . - 0 ID=Phyra82990;Parent=Phyra82990;rank=4 scaffold_81 . CDS 90166 90925 . - 0 ID=Phyra82990;Parent=Phyra82990;rank=3 scaffold_81 . CDS 90957 91135 . - 0 ID=Phyra82990;Parent=Phyra82990;rank=2 scaffold_81 . CDS 91205 92340 . - 0 ID=Phyra82990;Parent=Phyra82990;rank=1 scaffold_81 . exon 88504 89662 . - . ID=Phyra82990.4;Parent=Phyra82990;constitutive=1;ensembl_phase=2;rank=4 scaffold_81 . exon 90166 90925 . - . ID=Phyra82990.3;Parent=Phyra82990;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_81 . exon 90957 91135 . - . ID=Phyra82990.2;Parent=Phyra82990;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_81 . exon 91205 92340 . - . ID=Phyra82990.1;Parent=Phyra82990;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 ensembl protein_coding_gene 92529 94090 . + . ID=Phyra82991;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000028;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 92529 94090 . + . ID=Phyra82991;Parent=Phyra82991;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 92529 92945 . + 0 ID=Phyra82991;Parent=Phyra82991;rank=1 scaffold_81 . exon 92529 92945 . + . ID=Phyra82991.1;Parent=Phyra82991;constitutive=1;rank=1 scaffold_81 . CDS 92992 93093 . + 0 ID=Phyra82991;Parent=Phyra82991;rank=2 scaffold_81 . exon 92992 93093 . + . ID=Phyra82991.2;Parent=Phyra82991;constitutive=1;rank=2 scaffold_81 . CDS 93158 93285 . + 0 ID=Phyra82991;Parent=Phyra82991;rank=3 scaffold_81 . exon 93158 93285 . + . ID=Phyra82991.3;Parent=Phyra82991;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_81 . CDS 93352 94090 . + 0 ID=Phyra82991;Parent=Phyra82991;rank=4 scaffold_81 . exon 93352 94090 . + . ID=Phyra82991.4;Parent=Phyra82991;constitutive=1;ensembl_phase=2;rank=4 scaffold_81 ensembl protein_coding_gene 94226 96023 . - . ID=Phyra82992;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000029;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 94226 96023 . - . ID=Phyra82992;Parent=Phyra82992;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 94226 95820 . - 0 ID=Phyra82992;Parent=Phyra82992;rank=2 scaffold_81 . exon 94226 95820 . - . ID=Phyra82992.2;Parent=Phyra82992;constitutive=1;ensembl_phase=1;rank=2 scaffold_81 . CDS 95891 96023 . - 0 ID=Phyra82992;Parent=Phyra82992;rank=1 scaffold_81 . exon 95891 96023 . - . ID=Phyra82992.1;Parent=Phyra82992;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 ensembl protein_coding_gene 97308 98792 . + . ID=Phyra82993;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000030;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 97308 98792 . + . ID=Phyra82993;Parent=Phyra82993;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 97308 98792 . + 0 ID=Phyra82993;Parent=Phyra82993;rank=1 scaffold_81 . exon 97308 98792 . + . ID=Phyra82993.1;Parent=Phyra82993;constitutive=1;rank=1 scaffold_81 . repeat_region 99125 99167 . ? . description=trf scaffold_81 . repeat_region 99128 99191 . ? . description=dust scaffold_81 . repeat_region 99130 99176 . ? . description=trf scaffold_81 . biological_region 99184 99189 0.999 + . logic_name=eponine scaffold_81 . biological_region 99334 99338 0.999 - . logic_name=eponine scaffold_81 . biological_region 102669 102672 0.999 + . logic_name=eponine scaffold_81 . biological_region 102858 102863 0.999 - . logic_name=eponine scaffold_81 . biological_region 102878 102883 0.999 + . logic_name=eponine scaffold_81 . biological_region 102911 102918 0.999 + . logic_name=eponine scaffold_81 . repeat_region 103850 103876 . ? . description=trf scaffold_81 . biological_region 104016 104023 0.999 + . logic_name=eponine scaffold_81 ensembl protein_coding_gene 107890 108404 . - . ID=Phyra72071;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_81000002;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 107890 108404 . - . ID=Phyra72071;Parent=Phyra72071;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 107890 108027 . - 0 ID=Phyra72071;Parent=Phyra72071;rank=2 scaffold_81 . exon 107890 108027 . - . ID=Phyra72071.2;Parent=Phyra72071;constitutive=1;rank=2 scaffold_81 . CDS 108096 108404 . - 0 ID=Phyra72071;Parent=Phyra72071;rank=1 scaffold_81 ensembl protein_coding_gene 98998 100451 . + . ID=Phyra82994;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000031;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 98998 100451 . + . ID=Phyra82994;Parent=Phyra82994;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 98998 100182 . + 0 ID=Phyra82994;Parent=Phyra82994;rank=1 scaffold_81 . exon 98998 100182 . + . ID=Phyra82994.1;Parent=Phyra82994;constitutive=1;rank=1 scaffold_81 . CDS 100254 100451 . + 0 ID=Phyra82994;Parent=Phyra82994;rank=2 scaffold_81 . exon 100254 100451 . + . ID=Phyra82994.2;Parent=Phyra82994;constitutive=1;rank=2 scaffold_81 ensembl protein_coding_gene 100906 103067 . - . ID=Phyra82995;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000032;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 100906 103067 . - . ID=Phyra82995;Parent=Phyra82995;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 100906 102498 . - 0 ID=Phyra82995;Parent=Phyra82995;rank=2 scaffold_81 . exon 100906 102498 . - . ID=Phyra82995.2;Parent=Phyra82995;constitutive=1;rank=2 scaffold_81 . CDS 102573 103067 . - 0 ID=Phyra82995;Parent=Phyra82995;rank=1 scaffold_81 . exon 102573 103067 . - . ID=Phyra82995.1;Parent=Phyra82995;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 104062 107511 . + . ID=Phyra82996;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000033;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 104062 107511 . + . ID=Phyra82996;Parent=Phyra82996;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 104062 104182 . + 0 ID=Phyra82996;Parent=Phyra82996;rank=1 scaffold_81 . exon 104062 104182 . + . ID=Phyra82996.1;Parent=Phyra82996;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 . CDS 104270 104567 . + 0 ID=Phyra82996;Parent=Phyra82996;rank=2 scaffold_81 . exon 104270 104567 . + . ID=Phyra82996.2;Parent=Phyra82996;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_81 . CDS 104635 104698 . + 0 ID=Phyra82996;Parent=Phyra82996;rank=3 scaffold_81 . exon 104635 104698 . + . ID=Phyra82996.3;Parent=Phyra82996;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 . CDS 104765 106445 . + 0 ID=Phyra82996;Parent=Phyra82996;rank=4 scaffold_81 . exon 104765 106445 . + . ID=Phyra82996.4;Parent=Phyra82996;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_81 . CDS 106517 107202 . + 0 ID=Phyra82996;Parent=Phyra82996;rank=5 scaffold_81 . exon 106517 107202 . + . ID=Phyra82996.5;Parent=Phyra82996;constitutive=1;ensembl_phase=1;rank=5 scaffold_81 . CDS 107275 107511 . + 0 ID=Phyra82996;Parent=Phyra82996;rank=6 scaffold_81 . exon 107275 107511 . + . ID=Phyra82996.6;Parent=Phyra82996;constitutive=1;rank=6 scaffold_81 . repeat_region 115787 115975 . + . description=(CAG)n scaffold_81 . exon 108096 108404 . - . ID=Phyra72071.1;Parent=Phyra72071;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 109360 111135 . + . ID=Phyra72072;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_81000003;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 109360 111135 . + . ID=Phyra72072;Parent=Phyra72072;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 109360 111135 . + 0 ID=Phyra72072;Parent=Phyra72072;rank=1 scaffold_81 . exon 109360 111135 . + . ID=Phyra72072.1;Parent=Phyra72072;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 111256 111976 . + . ID=Phyra82999;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000036;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 111256 111976 . + . ID=Phyra82999;Parent=Phyra82999;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 111256 111294 . + 0 ID=Phyra82999;Parent=Phyra82999;rank=1 scaffold_81 . exon 111256 111294 . + . ID=Phyra82999.1;Parent=Phyra82999;constitutive=1;rank=1 scaffold_81 . CDS 111361 111622 . + 0 ID=Phyra82999;Parent=Phyra82999;rank=2 scaffold_81 . exon 111361 111622 . + . ID=Phyra82999.2;Parent=Phyra82999;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_81 . CDS 111687 111817 . + 0 ID=Phyra82999;Parent=Phyra82999;rank=3 scaffold_81 . exon 111687 111817 . + . ID=Phyra82999.3;Parent=Phyra82999;constitutive=1;ensembl_phase=1;rank=3 scaffold_81 . CDS 111905 111976 . + 0 ID=Phyra82999;Parent=Phyra82999;rank=4 scaffold_81 . exon 111905 111976 . + . ID=Phyra82999.4;Parent=Phyra82999;constitutive=1;rank=4 scaffold_81 ensembl protein_coding_gene 112290 116048 . + . ID=Phyra83000;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000037;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 112290 116048 . + . ID=Phyra83000;Parent=Phyra83000;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 112290 112886 . + 0 ID=Phyra83000;Parent=Phyra83000;rank=1 scaffold_81 . exon 112290 112886 . + . ID=Phyra83000.1;Parent=Phyra83000;constitutive=1;rank=1 scaffold_81 . CDS 113115 113204 . + 0 ID=Phyra83000;Parent=Phyra83000;rank=2 scaffold_81 . exon 113115 113204 . + . ID=Phyra83000.2;Parent=Phyra83000;constitutive=1;rank=2 scaffold_81 . CDS 113270 113362 . + 0 ID=Phyra83000;Parent=Phyra83000;rank=3 scaffold_81 . exon 113270 113362 . + . ID=Phyra83000.3;Parent=Phyra83000;constitutive=1;rank=3 scaffold_81 . CDS 113437 113853 . + 0 ID=Phyra83000;Parent=Phyra83000;rank=4 scaffold_81 . exon 113437 113853 . + . ID=Phyra83000.4;Parent=Phyra83000;constitutive=1;rank=4 scaffold_81 . CDS 113916 113980 . + 0 ID=Phyra83000;Parent=Phyra83000;rank=5 scaffold_81 . exon 113916 113980 . + . ID=Phyra83000.5;Parent=Phyra83000;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_81 . CDS 114054 114185 . + 0 ID=Phyra83000;Parent=Phyra83000;rank=6 scaffold_81 . exon 114054 114185 . + . ID=Phyra83000.6;Parent=Phyra83000;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_81 . CDS 114228 114330 . + 0 ID=Phyra83000;Parent=Phyra83000;rank=7 scaffold_81 . exon 114228 114330 . + . ID=Phyra83000.7;Parent=Phyra83000;constitutive=1;ensembl_phase=2;rank=7 scaffold_81 . CDS 114783 116048 . + 0 ID=Phyra83000;Parent=Phyra83000;rank=8 scaffold_81 . exon 114783 116048 . + . ID=Phyra83000.8;Parent=Phyra83000;constitutive=1;rank=8 scaffold_81 ensembl protein_coding_gene 117140 119775 . - . ID=Phyra83001;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000038;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 117140 119775 . - . ID=Phyra83001;Parent=Phyra83001;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 117140 117166 . - 0 ID=Phyra83001;Parent=Phyra83001;rank=9 scaffold_81 . exon 117140 117166 . - . ID=Phyra83001.9;Parent=Phyra83001;constitutive=1;rank=9 scaffold_81 . CDS 117223 117650 . - 0 ID=Phyra83001;Parent=Phyra83001;rank=8 scaffold_81 . exon 117223 117650 . - . ID=Phyra83001.8;Parent=Phyra83001;constitutive=1;ensembl_phase=1;rank=8 scaffold_81 . CDS 117818 118664 . - 0 ID=Phyra83001;Parent=Phyra83001;rank=7 scaffold_81 . exon 117818 118664 . - . ID=Phyra83001.7;Parent=Phyra83001;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_81 . CDS 118807 118879 . - 0 ID=Phyra83001;Parent=Phyra83001;rank=6 scaffold_81 . CDS 119008 119028 . - 0 ID=Phyra83001;Parent=Phyra83001;rank=5 scaffold_81 . CDS 119100 119163 . - 0 ID=Phyra83001;Parent=Phyra83001;rank=4 scaffold_81 . CDS 119230 119383 . - 0 ID=Phyra83001;Parent=Phyra83001;rank=3 scaffold_81 . CDS 119445 119511 . - 0 ID=Phyra83001;Parent=Phyra83001;rank=2 scaffold_81 . CDS 119585 119775 . - 0 ID=Phyra83001;Parent=Phyra83001;rank=1 scaffold_81 . repeat_region 123887 124028 . ? . description=trf scaffold_81 . biological_region 125888 125892 0.999 + . logic_name=eponine scaffold_81 . biological_region 125935 125941 0.999 + . logic_name=eponine scaffold_81 . biological_region 125967 125973 0.999 - . logic_name=eponine scaffold_81 . biological_region 125980 125986 0.999 + . logic_name=eponine scaffold_81 . biological_region 126007 126009 0.999 - . logic_name=eponine scaffold_81 . biological_region 126060 126062 0.999 + . logic_name=eponine scaffold_81 . biological_region 126088 126091 0.999 - . logic_name=eponine scaffold_81 . biological_region 126128 126133 0.999 - . logic_name=eponine scaffold_81 . biological_region 126147 126148 0.999 + . logic_name=eponine scaffold_81 . biological_region 126199 126208 0.999 + . logic_name=eponine scaffold_81 . biological_region 126209 126218 0.999 - . logic_name=eponine scaffold_81 . biological_region 126235 126237 0.999 - . logic_name=eponine scaffold_81 . biological_region 126287 126295 0.999 + . logic_name=eponine scaffold_81 . biological_region 126310 126313 0.999 + . logic_name=eponine scaffold_81 . exon 118807 118879 . - . ID=Phyra83001.6;Parent=Phyra83001;constitutive=1;ensembl_phase=2;rank=6 scaffold_81 . exon 119008 119028 . - . ID=Phyra83001.5;Parent=Phyra83001;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_81 . exon 119100 119163 . - . ID=Phyra83001.4;Parent=Phyra83001;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_81 . exon 119230 119383 . - . ID=Phyra83001.3;Parent=Phyra83001;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_81 . exon 119445 119511 . - . ID=Phyra83001.2;Parent=Phyra83001;constitutive=1;ensembl_phase=2;rank=2 scaffold_81 . exon 119585 119775 . - . ID=Phyra83001.1;Parent=Phyra83001;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 ensembl protein_coding_gene 120714 121619 . + . ID=Phyra83002;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000039;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 120714 121619 . + . ID=Phyra83002;Parent=Phyra83002;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 120714 121619 . + 0 ID=Phyra83002;Parent=Phyra83002;rank=1 scaffold_81 . exon 120714 121619 . + . ID=Phyra83002.1;Parent=Phyra83002;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 122404 123339 . + . ID=Phyra83003;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000040;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 122404 123339 . + . ID=Phyra83003;Parent=Phyra83003;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 122404 123339 . + 0 ID=Phyra83003;Parent=Phyra83003;rank=1 scaffold_81 . exon 122404 123339 . + . ID=Phyra83003.1;Parent=Phyra83003;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 123808 124881 . + . ID=Phyra83004;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000041;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 123808 124881 . + . ID=Phyra83004;Parent=Phyra83004;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 123808 124881 . + 0 ID=Phyra83004;Parent=Phyra83004;rank=1 scaffold_81 . exon 123808 124881 . + . ID=Phyra83004.1;Parent=Phyra83004;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 125878 127071 . + . ID=Phyra83005;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000042;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 125878 127071 . + . ID=Phyra83005;Parent=Phyra83005;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 125878 127071 . + 0 ID=Phyra83005;Parent=Phyra83005;rank=1 scaffold_81 . exon 125878 127071 . + . ID=Phyra83005.1;Parent=Phyra83005;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 127246 127791 . - . ID=Phyra83006;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000043;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 127246 127791 . - . ID=Phyra83006;Parent=Phyra83006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 127246 127791 . - 0 ID=Phyra83006;Parent=Phyra83006;rank=1 scaffold_81 . exon 127246 127791 . - . ID=Phyra83006.1;Parent=Phyra83006;constitutive=1;rank=1 scaffold_81 . repeat_region 128365 128374 . ? . description=dust scaffold_81 ensembl protein_coding_gene 128449 129006 . - . ID=Phyra72073;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_81000004;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 128449 129006 . - . ID=Phyra72073;Parent=Phyra72073;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 128449 129006 . - 0 ID=Phyra72073;Parent=Phyra72073;rank=1 scaffold_81 . exon 128449 129006 . - . ID=Phyra72073.1;Parent=Phyra72073;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 129722 130348 . - . ID=Phyra83008;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000045;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 129722 130348 . - . ID=Phyra83008;Parent=Phyra83008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 129722 130348 . - 0 ID=Phyra83008;Parent=Phyra83008;rank=1 scaffold_81 . exon 129722 130348 . - . ID=Phyra83008.1;Parent=Phyra83008;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 132400 134316 . - . ID=Phyra83009;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000046;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 132400 134316 . - . ID=Phyra83009;Parent=Phyra83009;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 132400 133339 . - 0 ID=Phyra83009;Parent=Phyra83009;rank=2 scaffold_81 . exon 132400 133339 . - . ID=Phyra83009.2;Parent=Phyra83009;constitutive=1;ensembl_phase=2;rank=2 scaffold_81 . CDS 133379 134316 . - 0 ID=Phyra83009;Parent=Phyra83009;rank=1 scaffold_81 . exon 133379 134316 . - . ID=Phyra83009.1;Parent=Phyra83009;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 ensembl protein_coding_gene 134672 137548 . + . ID=Phyra83010;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000047;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 134672 137548 . + . ID=Phyra83010;Parent=Phyra83010;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 134672 137548 . + 0 ID=Phyra83010;Parent=Phyra83010;rank=1 scaffold_81 . exon 134672 137548 . + . ID=Phyra83010.1;Parent=Phyra83010;constitutive=1;rank=1 scaffold_81 . biological_region 137901 137902 0.999 + . logic_name=eponine scaffold_81 . biological_region 138260 138260 0.999 + . logic_name=eponine scaffold_81 . biological_region 138443 138447 0.999 - . logic_name=eponine scaffold_81 . biological_region 139191 139197 0.999 - . logic_name=eponine scaffold_81 . biological_region 140408 140412 0.999 + . logic_name=eponine scaffold_81 . repeat_region 140647 140732 . + . description=(CTG)n scaffold_81 . repeat_region 140650 140732 . ? . description=trf scaffold_81 . repeat_region 140657 140729 . ? . description=trf scaffold_81 . biological_region 144308 144313 0.999 + . logic_name=eponine scaffold_81 . biological_region 146458 146467 0.999 - . logic_name=eponine scaffold_81 . biological_region 146484 146484 0.999 - . logic_name=eponine scaffold_81 . biological_region 146989 146992 0.999 - . logic_name=eponine scaffold_81 ensembl protein_coding_gene 137885 139142 . + . ID=Phyra83011;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000048;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 137885 139142 . + . ID=Phyra83011;Parent=Phyra83011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 137885 138103 . + 0 ID=Phyra83011;Parent=Phyra83011;rank=1 scaffold_81 . exon 137885 138103 . + . ID=Phyra83011.1;Parent=Phyra83011;constitutive=1;rank=1 scaffold_81 . CDS 138171 139142 . + 0 ID=Phyra83011;Parent=Phyra83011;rank=2 scaffold_81 . exon 138171 139142 . + . ID=Phyra83011.2;Parent=Phyra83011;constitutive=1;rank=2 scaffold_81 ensembl protein_coding_gene 139713 140633 . - . ID=Phyra83012;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000049;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 139713 140633 . - . ID=Phyra83012;Parent=Phyra83012;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 139713 140633 . - 0 ID=Phyra83012;Parent=Phyra83012;rank=1 scaffold_81 . exon 139713 140633 . - . ID=Phyra83012.1;Parent=Phyra83012;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 142407 143528 . + . ID=Phyra83013;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000050;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 142407 143528 . + . ID=Phyra83013;Parent=Phyra83013;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 142407 142640 . + 0 ID=Phyra83013;Parent=Phyra83013;rank=1 scaffold_81 . exon 142407 142640 . + . ID=Phyra83013.1;Parent=Phyra83013;constitutive=1;rank=1 scaffold_81 . CDS 142730 142856 . + 0 ID=Phyra83013;Parent=Phyra83013;rank=2 scaffold_81 . exon 142730 142856 . + . ID=Phyra83013.2;Parent=Phyra83013;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_81 . CDS 142933 143125 . + 0 ID=Phyra83013;Parent=Phyra83013;rank=3 scaffold_81 . exon 142933 143125 . + . ID=Phyra83013.3;Parent=Phyra83013;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_81 . CDS 143210 143528 . + 0 ID=Phyra83013;Parent=Phyra83013;rank=4 scaffold_81 . exon 143210 143528 . + . ID=Phyra83013.4;Parent=Phyra83013;constitutive=1;ensembl_phase=2;rank=4 scaffold_81 ensembl protein_coding_gene 144323 145413 . + . ID=Phyra83014;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000051;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 144323 145413 . + . ID=Phyra83014;Parent=Phyra83014;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 144323 144532 . + 0 ID=Phyra83014;Parent=Phyra83014;rank=1 scaffold_81 . exon 144323 144532 . + . ID=Phyra83014.1;Parent=Phyra83014;constitutive=1;rank=1 scaffold_81 . CDS 144602 144740 . + 0 ID=Phyra83014;Parent=Phyra83014;rank=2 scaffold_81 . exon 144602 144740 . + . ID=Phyra83014.2;Parent=Phyra83014;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_81 . CDS 144800 144983 . + 0 ID=Phyra83014;Parent=Phyra83014;rank=3 scaffold_81 . exon 144800 144983 . + . ID=Phyra83014.3;Parent=Phyra83014;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_81 . CDS 145056 145413 . + 0 ID=Phyra83014;Parent=Phyra83014;rank=4 scaffold_81 . exon 145056 145413 . + . ID=Phyra83014.4;Parent=Phyra83014;constitutive=1;ensembl_phase=2;rank=4 scaffold_81 ensembl protein_coding_gene 145519 146682 . - . ID=Phyra83015;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000052;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 145519 146682 . - . ID=Phyra83015;Parent=Phyra83015;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 145519 146682 . - 0 ID=Phyra83015;Parent=Phyra83015;rank=1 scaffold_81 . exon 145519 146682 . - . ID=Phyra83015.1;Parent=Phyra83015;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 147787 150146 . - . ID=Phyra83016;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000053;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 147787 150146 . - . ID=Phyra83016;Parent=Phyra83016;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 147787 148149 . - 0 ID=Phyra83016;Parent=Phyra83016;rank=3 scaffold_81 . exon 147787 148149 . - . ID=Phyra83016.3;Parent=Phyra83016;constitutive=1;rank=3 scaffold_81 . CDS 148227 148565 . - 0 ID=Phyra83016;Parent=Phyra83016;rank=2 scaffold_81 . exon 148227 148565 . - . ID=Phyra83016.2;Parent=Phyra83016;constitutive=1;rank=2 scaffold_81 . CDS 149019 150146 . - 0 ID=Phyra83016;Parent=Phyra83016;rank=1 scaffold_81 . exon 149019 150146 . - . ID=Phyra83016.1;Parent=Phyra83016;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 150404 151585 . - . ID=Phyra83017;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000054;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 150404 151585 . - . ID=Phyra83017;Parent=Phyra83017;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 150404 151585 . - 0 ID=Phyra83017;Parent=Phyra83017;rank=1 scaffold_81 . exon 150404 151585 . - . ID=Phyra83017.1;Parent=Phyra83017;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 152840 157284 . - . ID=Phyra83018;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000055;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 152840 157284 . - . ID=Phyra83018;Parent=Phyra83018;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 152840 153363 . - 0 ID=Phyra83018;Parent=Phyra83018;rank=12 scaffold_81 . exon 152840 153363 . - . ID=Phyra83018.12;Parent=Phyra83018;constitutive=1;ensembl_phase=1;rank=12 scaffold_81 . CDS 153429 153498 . - 0 ID=Phyra83018;Parent=Phyra83018;rank=11 scaffold_81 . exon 153429 153498 . - . ID=Phyra83018.11;Parent=Phyra83018;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_81 . CDS 153562 153630 . - 0 ID=Phyra83018;Parent=Phyra83018;rank=10 scaffold_81 . exon 153562 153630 . - . ID=Phyra83018.10;Parent=Phyra83018;constitutive=1;rank=10 scaffold_81 . CDS 153698 153899 . - 0 ID=Phyra83018;Parent=Phyra83018;rank=9 scaffold_81 . exon 153698 153899 . - . ID=Phyra83018.9;Parent=Phyra83018;constitutive=1;ensembl_phase=2;rank=9 scaffold_81 . CDS 154055 154758 . - 0 ID=Phyra83018;Parent=Phyra83018;rank=8 scaffold_81 . exon 154055 154758 . - . ID=Phyra83018.8;Parent=Phyra83018;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_81 . CDS 154831 154995 . - 0 ID=Phyra83018;Parent=Phyra83018;rank=7 scaffold_81 . exon 154831 154995 . - . ID=Phyra83018.7;Parent=Phyra83018;constitutive=1;rank=7 scaffold_81 . CDS 155063 155149 . - 0 ID=Phyra83018;Parent=Phyra83018;rank=6 scaffold_81 . exon 155063 155149 . - . ID=Phyra83018.6;Parent=Phyra83018;constitutive=1;rank=6 scaffold_81 . CDS 155214 155297 . - 0 ID=Phyra83018;Parent=Phyra83018;rank=5 scaffold_81 . exon 155214 155297 . - . ID=Phyra83018.5;Parent=Phyra83018;constitutive=1;rank=5 scaffold_81 . CDS 155479 156381 . - 0 ID=Phyra83018;Parent=Phyra83018;rank=4 scaffold_81 . exon 155479 156381 . - . ID=Phyra83018.4;Parent=Phyra83018;constitutive=1;rank=4 scaffold_81 . CDS 156455 156595 . - 0 ID=Phyra83018;Parent=Phyra83018;rank=3 scaffold_81 . exon 156455 156595 . - . ID=Phyra83018.3;Parent=Phyra83018;constitutive=1;rank=3 scaffold_81 . CDS 156659 156921 . - 0 ID=Phyra83018;Parent=Phyra83018;rank=2 scaffold_81 . exon 156659 156921 . - . ID=Phyra83018.2;Parent=Phyra83018;constitutive=1;ensembl_phase=1;rank=2 scaffold_81 . CDS 157002 157284 . - 0 ID=Phyra83018;Parent=Phyra83018;rank=1 scaffold_81 . exon 157002 157284 . - . ID=Phyra83018.1;Parent=Phyra83018;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 . biological_region 159718 159721 0.999 - . logic_name=eponine scaffold_81 . repeat_region 161918 161928 . ? . description=dust scaffold_81 ensembl protein_coding_gene 158983 160124 . - . ID=Phyra83019;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000056;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 158983 160124 . - . ID=Phyra83019;Parent=Phyra83019;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 158983 159573 . - 0 ID=Phyra83019;Parent=Phyra83019;rank=3 scaffold_81 . exon 158983 159573 . - . ID=Phyra83019.3;Parent=Phyra83019;constitutive=1;rank=3 scaffold_81 . CDS 159629 160042 . - 0 ID=Phyra83019;Parent=Phyra83019;rank=2 scaffold_81 . exon 159629 160042 . - . ID=Phyra83019.2;Parent=Phyra83019;constitutive=1;rank=2 scaffold_81 . CDS 160113 160124 . - 0 ID=Phyra83019;Parent=Phyra83019;rank=1 scaffold_81 . exon 160113 160124 . - . ID=Phyra83019.1;Parent=Phyra83019;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 166104 168266 . - . ID=Phyra83021;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000058;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 166104 168266 . - . ID=Phyra83021;Parent=Phyra83021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 166104 168266 . - 0 ID=Phyra83021;Parent=Phyra83021;rank=1 scaffold_81 . exon 166104 168266 . - . ID=Phyra83021.1;Parent=Phyra83021;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 164828 165770 . + . ID=Phyra96489;biotype=protein_coding;external_name=C_scaffold_81000013;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 164828 165770 . + . ID=Phyra96489;Parent=Phyra96489;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 164828 164998 . + 0 ID=Phyra96489;Parent=Phyra96489;rank=1 scaffold_81 . exon 164828 164998 . + . ID=Phyra96489.1;Parent=Phyra96489;constitutive=1;rank=1 scaffold_81 . CDS 165020 165669 . + 0 ID=Phyra96489;Parent=Phyra96489;rank=2 scaffold_81 . exon 165020 165669 . + . ID=Phyra96489.2;Parent=Phyra96489;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_81 . CDS 165725 165770 . + 0 ID=Phyra96489;Parent=Phyra96489;rank=3 scaffold_81 . exon 165725 165770 . + . ID=Phyra96489.3;Parent=Phyra96489;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 . repeat_region 172737 172779 . ? . description=trf scaffold_81 ensembl protein_coding_gene 175022 176101 . - . ID=Phyra72074;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_81000005;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 175022 176101 . - . ID=Phyra72074;Parent=Phyra72074;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 175022 176101 . - 0 ID=Phyra72074;Parent=Phyra72074;rank=1 scaffold_81 . exon 175022 176101 . - . ID=Phyra72074.1;Parent=Phyra72074;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 169703 171043 . - . ID=Phyra83022;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000059;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 169703 171043 . - . ID=Phyra83022;Parent=Phyra83022;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 169703 169963 . - 0 ID=Phyra83022;Parent=Phyra83022;rank=4 scaffold_81 . exon 169703 169963 . - . ID=Phyra83022.4;Parent=Phyra83022;constitutive=1;rank=4 scaffold_81 . CDS 170031 170207 . - 0 ID=Phyra83022;Parent=Phyra83022;rank=3 scaffold_81 . exon 170031 170207 . - . ID=Phyra83022.3;Parent=Phyra83022;constitutive=1;rank=3 scaffold_81 . CDS 170267 170567 . - 0 ID=Phyra83022;Parent=Phyra83022;rank=2 scaffold_81 . exon 170267 170567 . - . ID=Phyra83022.2;Parent=Phyra83022;constitutive=1;ensembl_phase=2;rank=2 scaffold_81 . CDS 170640 171043 . - 0 ID=Phyra83022;Parent=Phyra83022;rank=1 scaffold_81 . exon 170640 171043 . - . ID=Phyra83022.1;Parent=Phyra83022;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 ensembl protein_coding_gene 171443 171883 . + . ID=Phyra83023;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000060;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 171443 171883 . + . ID=Phyra83023;Parent=Phyra83023;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 171443 171883 . + 0 ID=Phyra83023;Parent=Phyra83023;rank=1 scaffold_81 . exon 171443 171883 . + . ID=Phyra83023.1;Parent=Phyra83023;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 173554 174069 . + . ID=Phyra83024;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000061;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 173554 174069 . + . ID=Phyra83024;Parent=Phyra83024;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 173554 174069 . + 0 ID=Phyra83024;Parent=Phyra83024;rank=1 scaffold_81 . exon 173554 174069 . + . ID=Phyra83024.1;Parent=Phyra83024;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 176383 178166 . + . ID=Phyra83026;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000063;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 176383 178166 . + . ID=Phyra83026;Parent=Phyra83026;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 176383 176398 . + 0 ID=Phyra83026;Parent=Phyra83026;rank=1 scaffold_81 . exon 176383 176398 . + . ID=Phyra83026.1;Parent=Phyra83026;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 . CDS 176482 176527 . + 0 ID=Phyra83026;Parent=Phyra83026;rank=2 scaffold_81 . exon 176482 176527 . + . ID=Phyra83026.2;Parent=Phyra83026;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_81 . CDS 176610 176787 . + 0 ID=Phyra83026;Parent=Phyra83026;rank=3 scaffold_81 . exon 176610 176787 . + . ID=Phyra83026.3;Parent=Phyra83026;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 . CDS 176873 176923 . + 0 ID=Phyra83026;Parent=Phyra83026;rank=4 scaffold_81 . CDS 177055 177115 . + 0 ID=Phyra83026;Parent=Phyra83026;rank=5 scaffold_81 . CDS 177175 178166 . + 0 ID=Phyra83026;Parent=Phyra83026;rank=6 scaffold_81 . biological_region 178723 178725 0.999 + . logic_name=eponine scaffold_81 . biological_region 182360 182365 0.999 - . logic_name=eponine scaffold_81 . biological_region 182415 182419 0.999 + . logic_name=eponine scaffold_81 . biological_region 183362 183368 0.999 - . logic_name=eponine scaffold_81 . exon 176873 176923 . + . ID=Phyra83026.4;Parent=Phyra83026;constitutive=1;rank=4 scaffold_81 . exon 177055 177115 . + . ID=Phyra83026.5;Parent=Phyra83026;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_81 . exon 177175 178166 . + . ID=Phyra83026.6;Parent=Phyra83026;constitutive=1;ensembl_phase=1;rank=6 scaffold_81 ensembl protein_coding_gene 178386 179372 . - . ID=Phyra83027;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000064;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 178386 179372 . - . ID=Phyra83027;Parent=Phyra83027;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 178386 178838 . - 0 ID=Phyra83027;Parent=Phyra83027;rank=4 scaffold_81 . exon 178386 178838 . - . ID=Phyra83027.4;Parent=Phyra83027;constitutive=1;rank=4 scaffold_81 . CDS 178906 179013 . - 0 ID=Phyra83027;Parent=Phyra83027;rank=3 scaffold_81 . exon 178906 179013 . - . ID=Phyra83027.3;Parent=Phyra83027;constitutive=1;rank=3 scaffold_81 . CDS 179086 179158 . - 0 ID=Phyra83027;Parent=Phyra83027;rank=2 scaffold_81 . exon 179086 179158 . - . ID=Phyra83027.2;Parent=Phyra83027;constitutive=1;ensembl_phase=2;rank=2 scaffold_81 . CDS 179242 179372 . - 0 ID=Phyra83027;Parent=Phyra83027;rank=1 scaffold_81 . exon 179242 179372 . - . ID=Phyra83027.1;Parent=Phyra83027;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 ensembl protein_coding_gene 179522 181063 . - . ID=Phyra83028;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000065;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 179522 181063 . - . ID=Phyra83028;Parent=Phyra83028;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 179522 179710 . - 0 ID=Phyra83028;Parent=Phyra83028;rank=6 scaffold_81 . exon 179522 179710 . - . ID=Phyra83028.6;Parent=Phyra83028;constitutive=1;rank=6 scaffold_81 . CDS 179782 180135 . - 0 ID=Phyra83028;Parent=Phyra83028;rank=5 scaffold_81 . exon 179782 180135 . - . ID=Phyra83028.5;Parent=Phyra83028;constitutive=1;rank=5 scaffold_81 . CDS 180215 180313 . - 0 ID=Phyra83028;Parent=Phyra83028;rank=4 scaffold_81 . exon 180215 180313 . - . ID=Phyra83028.4;Parent=Phyra83028;constitutive=1;rank=4 scaffold_81 . CDS 180396 180528 . - 0 ID=Phyra83028;Parent=Phyra83028;rank=3 scaffold_81 . exon 180396 180528 . - . ID=Phyra83028.3;Parent=Phyra83028;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 . CDS 180593 180993 . - 0 ID=Phyra83028;Parent=Phyra83028;rank=2 scaffold_81 . exon 180593 180993 . - . ID=Phyra83028.2;Parent=Phyra83028;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_81 . CDS 181061 181063 . - 0 ID=Phyra83028;Parent=Phyra83028;rank=1 scaffold_81 . exon 181061 181063 . - . ID=Phyra83028.1;Parent=Phyra83028;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 181317 190355 . + . ID=Phyra83029;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000066;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 181317 190355 . + . ID=Phyra83029;Parent=Phyra83029;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 181317 184572 . + 0 ID=Phyra83029;Parent=Phyra83029;rank=1 scaffold_81 . exon 181317 184572 . + . ID=Phyra83029.1;Parent=Phyra83029;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 . CDS 184627 184749 . + 0 ID=Phyra83029;Parent=Phyra83029;rank=2 scaffold_81 . exon 184627 184749 . + . ID=Phyra83029.2;Parent=Phyra83029;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_81 . CDS 184961 188522 . + 0 ID=Phyra83029;Parent=Phyra83029;rank=3 scaffold_81 . exon 184961 188522 . + . ID=Phyra83029.3;Parent=Phyra83029;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_81 . CDS 188588 188609 . + 0 ID=Phyra83029;Parent=Phyra83029;rank=4 scaffold_81 . CDS 188643 190355 . + 0 ID=Phyra83029;Parent=Phyra83029;rank=5 scaffold_81 . repeat_region 193985 194019 . ? . description=trf scaffold_81 . exon 188588 188609 . + . ID=Phyra83029.4;Parent=Phyra83029;constitutive=1;ensembl_phase=2;rank=4 scaffold_81 . exon 188643 190355 . + . ID=Phyra83029.5;Parent=Phyra83029;constitutive=1;rank=5 scaffold_81 ensembl protein_coding_gene 192107 192718 . + . ID=Phyra83030;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000067;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 192107 192718 . + . ID=Phyra83030;Parent=Phyra83030;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 192107 192718 . + 0 ID=Phyra83030;Parent=Phyra83030;rank=1 scaffold_81 . exon 192107 192718 . + . ID=Phyra83030.1;Parent=Phyra83030;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 193050 195215 . - . ID=Phyra83031;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000068;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 193050 195215 . - . ID=Phyra83031;Parent=Phyra83031;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 193050 195215 . - 0 ID=Phyra83031;Parent=Phyra83031;rank=1 scaffold_81 . exon 193050 195215 . - . ID=Phyra83031.1;Parent=Phyra83031;constitutive=1;rank=1 scaffold_81 . biological_region 196516 196517 0.999 - . logic_name=eponine scaffold_81 . biological_region 197203 197204 0.999 - . logic_name=eponine scaffold_81 . biological_region 197255 197262 0.999 + . logic_name=eponine scaffold_81 . biological_region 197336 197342 0.999 - . logic_name=eponine scaffold_81 . biological_region 197377 197383 0.999 - . logic_name=eponine scaffold_81 . biological_region 197393 197395 0.999 + . logic_name=eponine scaffold_81 . biological_region 200193 200194 0.999 + . logic_name=eponine scaffold_81 . biological_region 200277 200278 0.999 - . logic_name=eponine scaffold_81 . biological_region 201115 201115 0.999 - . logic_name=eponine scaffold_81 . biological_region 201602 201609 0.999 + . logic_name=eponine scaffold_81 . biological_region 201658 201665 0.999 - . logic_name=eponine scaffold_81 . biological_region 202338 202343 0.999 + . logic_name=eponine scaffold_81 . biological_region 203300 203300 0.999 + . logic_name=eponine scaffold_81 . biological_region 203327 203328 0.999 - . logic_name=eponine scaffold_81 . biological_region 203474 203479 0.999 + . logic_name=eponine scaffold_81 . biological_region 203559 203565 0.999 - . logic_name=eponine scaffold_81 . biological_region 204297 204303 0.999 + . logic_name=eponine scaffold_81 . biological_region 204387 204394 0.999 - . logic_name=eponine scaffold_81 . biological_region 204649 204656 0.999 + . logic_name=eponine scaffold_81 . biological_region 204690 204693 0.999 + . logic_name=eponine scaffold_81 . biological_region 204749 204752 0.999 - . logic_name=eponine scaffold_81 . biological_region 204826 204828 0.999 + . logic_name=eponine scaffold_81 . biological_region 205623 205628 0.999 + . logic_name=eponine scaffold_81 . biological_region 205929 205931 0.999 - . logic_name=eponine scaffold_81 ensembl protein_coding_gene 196746 198482 . + . ID=Phyra83032;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000069;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 196746 198482 . + . ID=Phyra83032;Parent=Phyra83032;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 196746 198482 . + 0 ID=Phyra83032;Parent=Phyra83032;rank=1 scaffold_81 . exon 196746 198482 . + . ID=Phyra83032.1;Parent=Phyra83032;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 199194 200414 . - . ID=Phyra83033;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000070;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 199194 200414 . - . ID=Phyra83033;Parent=Phyra83033;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 199194 200225 . - 0 ID=Phyra83033;Parent=Phyra83033;rank=2 scaffold_81 . exon 199194 200225 . - . ID=Phyra83033.2;Parent=Phyra83033;constitutive=1;rank=2 scaffold_81 . CDS 200298 200414 . - 0 ID=Phyra83033;Parent=Phyra83033;rank=1 scaffold_81 . exon 200298 200414 . - . ID=Phyra83033.1;Parent=Phyra83033;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 201476 202852 . - . ID=Phyra83034;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000071;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 201476 202852 . - . ID=Phyra83034;Parent=Phyra83034;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 201476 202852 . - 0 ID=Phyra83034;Parent=Phyra83034;rank=1 scaffold_81 . exon 201476 202852 . - . ID=Phyra83034.1;Parent=Phyra83034;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 205537 207961 . + . ID=Phyra83035;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000072;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 205537 207961 . + . ID=Phyra83035;Parent=Phyra83035;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 205537 206013 . + 0 ID=Phyra83035;Parent=Phyra83035;rank=1 scaffold_81 . exon 205537 206013 . + . ID=Phyra83035.1;Parent=Phyra83035;constitutive=1;rank=1 scaffold_81 . CDS 206096 206340 . + 0 ID=Phyra83035;Parent=Phyra83035;rank=2 scaffold_81 . exon 206096 206340 . + . ID=Phyra83035.2;Parent=Phyra83035;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_81 . CDS 206409 206995 . + 0 ID=Phyra83035;Parent=Phyra83035;rank=3 scaffold_81 . CDS 207088 207176 . + 0 ID=Phyra83035;Parent=Phyra83035;rank=4 scaffold_81 . CDS 207255 207314 . + 0 ID=Phyra83035;Parent=Phyra83035;rank=5 scaffold_81 . CDS 207381 207479 . + 0 ID=Phyra83035;Parent=Phyra83035;rank=6 scaffold_81 . CDS 207557 207961 . + 0 ID=Phyra83035;Parent=Phyra83035;rank=7 scaffold_81 . repeat_region 215892 215912 . ? . description=trf scaffold_81 . repeat_region 215892 215912 . ? . description=dust scaffold_81 . exon 206409 206995 . + . ID=Phyra83035.3;Parent=Phyra83035;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_81 . exon 207088 207176 . + . ID=Phyra83035.4;Parent=Phyra83035;constitutive=1;ensembl_phase=1;rank=4 scaffold_81 . exon 207255 207314 . + . ID=Phyra83035.5;Parent=Phyra83035;constitutive=1;rank=5 scaffold_81 . exon 207381 207479 . + . ID=Phyra83035.6;Parent=Phyra83035;constitutive=1;rank=6 scaffold_81 . exon 207557 207961 . + . ID=Phyra83035.7;Parent=Phyra83035;constitutive=1;rank=7 scaffold_81 ensembl protein_coding_gene 208565 214314 . + . ID=Phyra83036;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_81000073;logic_name=jgi_phyra1 scaffold_81 ensembl transcript 208565 214314 . + . ID=Phyra83036;Parent=Phyra83036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_81 . CDS 208565 209380 . + 0 ID=Phyra83036;Parent=Phyra83036;rank=1 scaffold_81 . exon 208565 209380 . + . ID=Phyra83036.1;Parent=Phyra83036;constitutive=1;rank=1 scaffold_81 . CDS 209427 210149 . + 0 ID=Phyra83036;Parent=Phyra83036;rank=2 scaffold_81 . exon 209427 210149 . + . ID=Phyra83036.2;Parent=Phyra83036;constitutive=1;rank=2 scaffold_81 . CDS 210216 210258 . + 0 ID=Phyra83036;Parent=Phyra83036;rank=3 scaffold_81 . exon 210216 210258 . + . ID=Phyra83036.3;Parent=Phyra83036;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_81 . CDS 210324 210385 . + 0 ID=Phyra83036;Parent=Phyra83036;rank=4 scaffold_81 . exon 210324 210385 . + . ID=Phyra83036.4;Parent=Phyra83036;constitutive=1;ensembl_phase=1;rank=4 scaffold_81 . CDS 210573 212211 . + 0 ID=Phyra83036;Parent=Phyra83036;rank=5 scaffold_81 . exon 210573 212211 . + . ID=Phyra83036.5;Parent=Phyra83036;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_81 . CDS 212363 212388 . + 0 ID=Phyra83036;Parent=Phyra83036;rank=6 scaffold_81 . exon 212363 212388 . + . ID=Phyra83036.6;Parent=Phyra83036;constitutive=1;ensembl_phase=1;rank=6 scaffold_81 . CDS 212419 212488 . + 0 ID=Phyra83036;Parent=Phyra83036;rank=7 scaffold_81 . exon 212419 212488 . + . ID=Phyra83036.7;Parent=Phyra83036;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_81 . CDS 212566 212969 . + 0 ID=Phyra83036;Parent=Phyra83036;rank=8 scaffold_81 . exon 212566 212969 . + . ID=Phyra83036.8;Parent=Phyra83036;constitutive=1;ensembl_phase=1;rank=8 scaffold_81 . CDS 213030 214190 . + 0 ID=Phyra83036;Parent=Phyra83036;rank=9 scaffold_81 . exon 213030 214190 . + . ID=Phyra83036.9;Parent=Phyra83036;constitutive=1;rank=9 scaffold_81 . CDS 214282 214314 . + 0 ID=Phyra83036;Parent=Phyra83036;rank=10 scaffold_81 . exon 214282 214314 . + . ID=Phyra83036.10;Parent=Phyra83036;constitutive=1;rank=10 ##gff-version 3 ##sequence-region scaffold_80 1 217631 scaffold_80 . repeat_region 1 1136 . ? . description=trf scaffold_80 . biological_region 285 286 0.999 - . logic_name=eponine scaffold_80 . biological_region 711 712 0.999 - . logic_name=eponine scaffold_80 . repeat_region 1154 7868 . ? . description=dust scaffold_80 . repeat_region 8463 8470 . ? . description=dust scaffold_80 ensembl tRNA_gene 745 815 . - . ID=EPrPRAG00000000086;biotype=tRNA;description=tRNA-Gly for anticodon UCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_80 ensembl transcript 745 815 . - . ID=EPrPRAT00000000086;Parent=EPrPRAG00000000086;biotype=tRNA;logic_name=ncrna_eg scaffold_80 ensembl tRNA_gene 319 389 . - . ID=EPrPRAG00000000207;biotype=tRNA;description=tRNA-Gly for anticodon UCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_80 ensembl transcript 319 389 . - . ID=EPrPRAT00000000207;Parent=EPrPRAG00000000207;biotype=tRNA;logic_name=ncrna_eg scaffold_80 . exon 745 815 . - . ID=EPrPRAE00000000086;Parent=EPrPRAT00000000086;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . exon 319 389 . - . ID=EPrPRAE00000000207;Parent=EPrPRAT00000000207;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 ensembl protein_coding_gene 13700 14524 . - . ID=Phyra82901;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000001;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 13700 14524 . - . ID=Phyra82901;Parent=Phyra82901;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 13700 14524 . - 0 ID=Phyra82901;Parent=Phyra82901;rank=1 scaffold_80 . exon 13700 14524 . - . ID=Phyra82901.1;Parent=Phyra82901;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 16384 18006 . + . ID=Phyra82902;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000002;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 16384 18006 . + . ID=Phyra82902;Parent=Phyra82902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 16384 16512 . + 0 ID=Phyra82902;Parent=Phyra82902;rank=1 scaffold_80 . exon 16384 16512 . + . ID=Phyra82902.1;Parent=Phyra82902;constitutive=1;rank=1 scaffold_80 . CDS 16576 18006 . + 0 ID=Phyra82902;Parent=Phyra82902;rank=2 scaffold_80 . exon 16576 18006 . + . ID=Phyra82902.2;Parent=Phyra82902;constitutive=1;rank=2 scaffold_80 . biological_region 21772 21774 0.999 + . logic_name=eponine scaffold_80 . repeat_region 21956 22135 . ? . description=trf scaffold_80 . biological_region 22148 22149 0.999 - . logic_name=eponine scaffold_80 ensembl protein_coding_gene 22186 23541 . - . ID=Phyra53490;biotype=protein_coding;external_name=gwEuk.80.29.1;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 22186 23541 . - . ID=Phyra53490;Parent=Phyra53490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 22186 23541 . - 0 ID=Phyra53490;Parent=Phyra53490;rank=1 scaffold_80 . exon 22186 23541 . - . ID=Phyra53490.1;Parent=Phyra53490;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 19868 21379 . + . ID=Phyra72061;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_80000001;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 19868 21379 . + . ID=Phyra72061;Parent=Phyra72061;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 19868 21166 . + 0 ID=Phyra72061;Parent=Phyra72061;rank=1 scaffold_80 . exon 19868 21166 . + . ID=Phyra72061.1;Parent=Phyra72061;constitutive=1;rank=1 scaffold_80 . CDS 21215 21379 . + 0 ID=Phyra72061;Parent=Phyra72061;rank=2 scaffold_80 . exon 21215 21379 . + . ID=Phyra72061.2;Parent=Phyra72061;constitutive=1;rank=2 scaffold_80 ensembl protein_coding_gene 24502 25063 . + . ID=Phyra72063;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_80000003;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 24502 25063 . + . ID=Phyra72063;Parent=Phyra72063;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 24502 24933 . + 0 ID=Phyra72063;Parent=Phyra72063;rank=1 scaffold_80 . exon 24502 24933 . + . ID=Phyra72063.1;Parent=Phyra72063;constitutive=1;rank=1 scaffold_80 . CDS 24998 25063 . + 0 ID=Phyra72063;Parent=Phyra72063;rank=2 scaffold_80 . exon 24998 25063 . + . ID=Phyra72063.2;Parent=Phyra72063;constitutive=1;rank=2 scaffold_80 ensembl protein_coding_gene 25280 26332 . - . ID=Phyra82906;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000006;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 25280 26332 . - . ID=Phyra82906;Parent=Phyra82906;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 25280 26332 . - 0 ID=Phyra82906;Parent=Phyra82906;rank=1 scaffold_80 . exon 25280 26332 . - . ID=Phyra82906.1;Parent=Phyra82906;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 30105 31184 . - . ID=Phyra82907;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000007;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 30105 31184 . - . ID=Phyra82907;Parent=Phyra82907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 30105 30235 . - 0 ID=Phyra82907;Parent=Phyra82907;rank=6 scaffold_80 . exon 30105 30235 . - . ID=Phyra82907.6;Parent=Phyra82907;constitutive=1;ensembl_phase=1;rank=6 scaffold_80 . CDS 30276 30301 . - 0 ID=Phyra82907;Parent=Phyra82907;rank=5 scaffold_80 . exon 30276 30301 . - . ID=Phyra82907.5;Parent=Phyra82907;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_80 . CDS 30391 30416 . - 0 ID=Phyra82907;Parent=Phyra82907;rank=4 scaffold_80 . exon 30391 30416 . - . ID=Phyra82907.4;Parent=Phyra82907;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_80 . CDS 30503 30652 . - 0 ID=Phyra82907;Parent=Phyra82907;rank=3 scaffold_80 . exon 30503 30652 . - . ID=Phyra82907.3;Parent=Phyra82907;constitutive=1;rank=3 scaffold_80 . CDS 30713 31111 . - 0 ID=Phyra82907;Parent=Phyra82907;rank=2 scaffold_80 . exon 30713 31111 . - . ID=Phyra82907.2;Parent=Phyra82907;constitutive=1;rank=2 scaffold_80 . CDS 31146 31184 . - 0 ID=Phyra82907;Parent=Phyra82907;rank=1 scaffold_80 . exon 31146 31184 . - . ID=Phyra82907.1;Parent=Phyra82907;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 31501 32418 . + . ID=Phyra82908;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000008;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 31501 32418 . + . ID=Phyra82908;Parent=Phyra82908;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 31501 32418 . + 0 ID=Phyra82908;Parent=Phyra82908;rank=1 scaffold_80 . exon 31501 32418 . + . ID=Phyra82908.1;Parent=Phyra82908;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 38948 40191 . + . ID=Phyra82910;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000010;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 38948 40191 . + . ID=Phyra82910;Parent=Phyra82910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 38948 39841 . + 0 ID=Phyra82910;Parent=Phyra82910;rank=1 scaffold_80 . exon 38948 39841 . + . ID=Phyra82910.1;Parent=Phyra82910;constitutive=1;rank=1 scaffold_80 . CDS 40081 40191 . + 0 ID=Phyra82910;Parent=Phyra82910;rank=2 scaffold_80 ensembl protein_coding_gene 34965 38177 . - . ID=Phyra96463;biotype=protein_coding;external_name=C_scaffold_80000002;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 34965 38177 . - . ID=Phyra96463;Parent=Phyra96463;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 34965 34975 . - 0 ID=Phyra96463;Parent=Phyra96463;rank=7 scaffold_80 . exon 34965 34975 . - . ID=Phyra96463.7;Parent=Phyra96463;constitutive=1;ensembl_phase=1;rank=7 scaffold_80 . CDS 35264 35753 . - 0 ID=Phyra96463;Parent=Phyra96463;rank=6 scaffold_80 . exon 35264 35753 . - . ID=Phyra96463.6;Parent=Phyra96463;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_80 . CDS 35858 35933 . - 0 ID=Phyra96463;Parent=Phyra96463;rank=5 scaffold_80 . exon 35858 35933 . - . ID=Phyra96463.5;Parent=Phyra96463;constitutive=1;ensembl_phase=2;rank=5 scaffold_80 . CDS 35991 36056 . - 0 ID=Phyra96463;Parent=Phyra96463;rank=4 scaffold_80 . exon 35991 36056 . - . ID=Phyra96463.4;Parent=Phyra96463;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_80 . CDS 36117 36261 . - 0 ID=Phyra96463;Parent=Phyra96463;rank=3 scaffold_80 . exon 36117 36261 . - . ID=Phyra96463.3;Parent=Phyra96463;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_80 . CDS 36435 36757 . - 0 ID=Phyra96463;Parent=Phyra96463;rank=2 scaffold_80 . exon 36435 36757 . - . ID=Phyra96463.2;Parent=Phyra96463;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_80 . CDS 36829 38177 . - 0 ID=Phyra96463;Parent=Phyra96463;rank=1 scaffold_80 . exon 36829 38177 . - . ID=Phyra96463.1;Parent=Phyra96463;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . repeat_region 47057 47085 . ? . description=trf scaffold_80 . biological_region 47099 47105 0.999 - . logic_name=eponine scaffold_80 ensembl protein_coding_gene 46167 46607 . - . ID=Phyra53508;biotype=protein_coding;external_name=gwEuk.80.47.1;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 46167 46607 . - . ID=Phyra53508;Parent=Phyra53508;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 46167 46607 . - 0 ID=Phyra53508;Parent=Phyra53508;rank=1 scaffold_80 . exon 46167 46607 . - . ID=Phyra53508.1;Parent=Phyra53508;constitutive=1;rank=1 scaffold_80 . exon 40081 40191 . + . ID=Phyra82910.2;Parent=Phyra82910;constitutive=1;rank=2 scaffold_80 ensembl protein_coding_gene 46976 50550 . + . ID=Phyra96466;biotype=protein_coding;external_name=C_scaffold_80000005;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 46976 50550 . + . ID=Phyra96466;Parent=Phyra96466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 46976 47224 . + 0 ID=Phyra96466;Parent=Phyra96466;rank=1 scaffold_80 . exon 46976 47224 . + . ID=Phyra96466.1;Parent=Phyra96466;constitutive=1;rank=1 scaffold_80 . CDS 47267 47581 . + 0 ID=Phyra96466;Parent=Phyra96466;rank=2 scaffold_80 . exon 47267 47581 . + . ID=Phyra96466.2;Parent=Phyra96466;constitutive=1;rank=2 scaffold_80 . CDS 47615 48698 . + 0 ID=Phyra96466;Parent=Phyra96466;rank=3 scaffold_80 . exon 47615 48698 . + . ID=Phyra96466.3;Parent=Phyra96466;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_80 . CDS 48834 48937 . + 0 ID=Phyra96466;Parent=Phyra96466;rank=4 scaffold_80 . exon 48834 48937 . + . ID=Phyra96466.4;Parent=Phyra96466;constitutive=1;ensembl_phase=1;rank=4 scaffold_80 . CDS 49010 49120 . + 0 ID=Phyra96466;Parent=Phyra96466;rank=5 scaffold_80 . exon 49010 49120 . + . ID=Phyra96466.5;Parent=Phyra96466;constitutive=1;rank=5 scaffold_80 . CDS 49186 49256 . + 0 ID=Phyra96466;Parent=Phyra96466;rank=6 scaffold_80 . exon 49186 49256 . + . ID=Phyra96466.6;Parent=Phyra96466;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_80 . CDS 49325 49483 . + 0 ID=Phyra96466;Parent=Phyra96466;rank=7 scaffold_80 . exon 49325 49483 . + . ID=Phyra96466.7;Parent=Phyra96466;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_80 . CDS 49960 50015 . + 0 ID=Phyra96466;Parent=Phyra96466;rank=8 scaffold_80 . CDS 50074 50249 . + 0 ID=Phyra96466;Parent=Phyra96466;rank=9 scaffold_80 . CDS 50362 50433 . + 0 ID=Phyra96466;Parent=Phyra96466;rank=10 scaffold_80 . CDS 50509 50550 . + 0 ID=Phyra96466;Parent=Phyra96466;rank=11 scaffold_80 . repeat_region 52578 52635 . ? . description=dust scaffold_80 . repeat_region 57492 57500 . ? . description=dust scaffold_80 ensembl protein_coding_gene 52762 54182 . + . ID=Phyra82913;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000013;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 52762 54182 . + . ID=Phyra82913;Parent=Phyra82913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 52762 53630 . + 0 ID=Phyra82913;Parent=Phyra82913;rank=1 scaffold_80 . exon 52762 53630 . + . ID=Phyra82913.1;Parent=Phyra82913;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . CDS 53690 53810 . + 0 ID=Phyra82913;Parent=Phyra82913;rank=2 scaffold_80 . exon 53690 53810 . + . ID=Phyra82913.2;Parent=Phyra82913;constitutive=1;ensembl_phase=2;rank=2 scaffold_80 . CDS 53880 54182 . + 0 ID=Phyra82913;Parent=Phyra82913;rank=3 scaffold_80 . exon 53880 54182 . + . ID=Phyra82913.3;Parent=Phyra82913;constitutive=1;rank=3 scaffold_80 . exon 49960 50015 . + . ID=Phyra96466.8;Parent=Phyra96466;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_80 . exon 50074 50249 . + . ID=Phyra96466.9;Parent=Phyra96466;constitutive=1;ensembl_phase=1;rank=9 scaffold_80 . exon 50362 50433 . + . ID=Phyra96466.10;Parent=Phyra96466;constitutive=1;rank=10 scaffold_80 . exon 50509 50550 . + . ID=Phyra96466.11;Parent=Phyra96466;constitutive=1;rank=11 scaffold_80 ensembl protein_coding_gene 54210 57378 . - . ID=Phyra96467;biotype=protein_coding;external_name=C_scaffold_80000006;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 54210 57378 . - . ID=Phyra96467;Parent=Phyra96467;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 54210 54409 . - 0 ID=Phyra96467;Parent=Phyra96467;rank=12 scaffold_80 . exon 54210 54409 . - . ID=Phyra96467.12;Parent=Phyra96467;constitutive=1;ensembl_phase=1;rank=12 scaffold_80 . CDS 54476 54604 . - 0 ID=Phyra96467;Parent=Phyra96467;rank=11 scaffold_80 . exon 54476 54604 . - . ID=Phyra96467.11;Parent=Phyra96467;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_80 . CDS 54667 54834 . - 0 ID=Phyra96467;Parent=Phyra96467;rank=10 scaffold_80 . exon 54667 54834 . - . ID=Phyra96467.10;Parent=Phyra96467;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_80 . CDS 54874 54937 . - 0 ID=Phyra96467;Parent=Phyra96467;rank=9 scaffold_80 . exon 54874 54937 . - . ID=Phyra96467.9;Parent=Phyra96467;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_80 . CDS 55025 55134 . - 0 ID=Phyra96467;Parent=Phyra96467;rank=8 scaffold_80 . exon 55025 55134 . - . ID=Phyra96467.8;Parent=Phyra96467;constitutive=1;ensembl_phase=1;rank=8 scaffold_80 . CDS 55193 55269 . - 0 ID=Phyra96467;Parent=Phyra96467;rank=7 scaffold_80 . exon 55193 55269 . - . ID=Phyra96467.7;Parent=Phyra96467;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_80 . CDS 55390 55655 . - 0 ID=Phyra96467;Parent=Phyra96467;rank=6 scaffold_80 . exon 55390 55655 . - . ID=Phyra96467.6;Parent=Phyra96467;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_80 . CDS 55823 55904 . - 0 ID=Phyra96467;Parent=Phyra96467;rank=5 scaffold_80 . exon 55823 55904 . - . ID=Phyra96467.5;Parent=Phyra96467;constitutive=1;ensembl_phase=2;rank=5 scaffold_80 . CDS 55983 56069 . - 0 ID=Phyra96467;Parent=Phyra96467;rank=4 scaffold_80 . exon 55983 56069 . - . ID=Phyra96467.4;Parent=Phyra96467;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_80 . CDS 56148 56315 . - 0 ID=Phyra96467;Parent=Phyra96467;rank=3 scaffold_80 . exon 56148 56315 . - . ID=Phyra96467.3;Parent=Phyra96467;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_80 . CDS 56408 56599 . - 0 ID=Phyra96467;Parent=Phyra96467;rank=2 scaffold_80 . exon 56408 56599 . - . ID=Phyra96467.2;Parent=Phyra96467;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_80 . CDS 56660 57378 . - 0 ID=Phyra96467;Parent=Phyra96467;rank=1 scaffold_80 . exon 56660 57378 . - . ID=Phyra96467.1;Parent=Phyra96467;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 ensembl protein_coding_gene 57527 59339 . + . ID=Phyra96468;biotype=protein_coding;external_name=C_scaffold_80000007;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 57527 59339 . + . ID=Phyra96468;Parent=Phyra96468;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 57527 59293 . + 0 ID=Phyra96468;Parent=Phyra96468;rank=1 scaffold_80 . exon 57527 59293 . + . ID=Phyra96468.1;Parent=Phyra96468;constitutive=1;rank=1 scaffold_80 . CDS 59322 59339 . + 0 ID=Phyra96468;Parent=Phyra96468;rank=2 scaffold_80 . exon 59322 59339 . + . ID=Phyra96468.2;Parent=Phyra96468;constitutive=1;rank=2 scaffold_80 . biological_region 63754 63756 0.999 - . logic_name=eponine scaffold_80 . biological_region 65085 65091 0.999 + . logic_name=eponine scaffold_80 . biological_region 68893 68894 0.999 + . logic_name=eponine scaffold_80 . biological_region 68949 68954 0.999 - . logic_name=eponine scaffold_80 ensembl protein_coding_gene 61453 73963 . + . ID=Phyra96469;biotype=protein_coding;external_name=C_scaffold_80000008;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 61453 73963 . + . ID=Phyra96469;Parent=Phyra96469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 61453 61456 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=1 scaffold_80 . exon 61453 61456 . + . ID=Phyra96469.1;Parent=Phyra96469;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_80 . CDS 61482 61583 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=2 scaffold_80 . exon 61482 61583 . + . ID=Phyra96469.2;Parent=Phyra96469;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_80 . CDS 61995 62492 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=3 scaffold_80 . exon 61995 62492 . + . ID=Phyra96469.3;Parent=Phyra96469;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_80 . CDS 62529 62713 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=4 scaffold_80 . exon 62529 62713 . + . ID=Phyra96469.4;Parent=Phyra96469;constitutive=1;ensembl_phase=1;rank=4 scaffold_80 . CDS 62948 63037 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=5 scaffold_80 . exon 62948 63037 . + . ID=Phyra96469.5;Parent=Phyra96469;constitutive=1;rank=5 scaffold_80 . CDS 63173 63386 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=6 scaffold_80 . exon 63173 63386 . + . ID=Phyra96469.6;Parent=Phyra96469;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_80 . CDS 63537 63689 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=7 scaffold_80 . exon 63537 63689 . + . ID=Phyra96469.7;Parent=Phyra96469;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_80 . CDS 63786 63863 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=8 scaffold_80 . exon 63786 63863 . + . ID=Phyra96469.8;Parent=Phyra96469;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_80 . CDS 63924 64328 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=9 scaffold_80 . exon 63924 64328 . + . ID=Phyra96469.9;Parent=Phyra96469;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_80 . CDS 64470 64574 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=10 scaffold_80 . exon 64470 64574 . + . ID=Phyra96469.10;Parent=Phyra96469;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_80 . CDS 64869 65045 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=11 scaffold_80 . exon 64869 65045 . + . ID=Phyra96469.11;Parent=Phyra96469;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_80 . CDS 65286 65781 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=12 scaffold_80 . exon 65286 65781 . + . ID=Phyra96469.12;Parent=Phyra96469;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_80 . CDS 65932 66071 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=13 scaffold_80 . exon 65932 66071 . + . ID=Phyra96469.13;Parent=Phyra96469;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=13 scaffold_80 . CDS 66492 67267 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=14 scaffold_80 . exon 66492 67267 . + . ID=Phyra96469.14;Parent=Phyra96469;constitutive=1;ensembl_phase=1;rank=14 scaffold_80 . CDS 67388 68792 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=15 scaffold_80 . exon 67388 68792 . + . ID=Phyra96469.15;Parent=Phyra96469;constitutive=1;ensembl_end_phase=1;rank=15 scaffold_80 . CDS 69009 70367 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=16 scaffold_80 . exon 69009 70367 . + . ID=Phyra96469.16;Parent=Phyra96469;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=16 scaffold_80 . CDS 70548 70693 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=17 scaffold_80 . CDS 70745 70934 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=18 scaffold_80 . CDS 70992 71204 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=19 scaffold_80 . CDS 71232 72435 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=20 scaffold_80 . CDS 72838 73268 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=21 scaffold_80 . CDS 73293 73963 . + 0 ID=Phyra96469;Parent=Phyra96469;rank=22 scaffold_80 . repeat_region 74610 74892 . ? . description=trf scaffold_80 . repeat_region 74726 74808 . ? . description=dust scaffold_80 . repeat_region 74905 74951 . ? . description=trf scaffold_80 . repeat_region 74958 75265 . ? . description=trf scaffold_80 . repeat_region 74958 75265 . ? . description=trf scaffold_80 . repeat_region 75057 75337 . ? . description=trf scaffold_80 . repeat_region 75275 75342 . ? . description=trf scaffold_80 . repeat_region 75351 75427 . ? . description=trf scaffold_80 . repeat_region 75680 75715 . ? . description=trf scaffold_80 . repeat_region 76322 76386 . ? . description=trf scaffold_80 . repeat_region 76370 76399 . ? . description=trf scaffold_80 . repeat_region 76382 76480 . ? . description=trf scaffold_80 . repeat_region 77051 77076 . ? . description=trf scaffold_80 . repeat_region 77466 77515 . ? . description=dust scaffold_80 . repeat_region 78869 78918 . ? . description=dust scaffold_80 . repeat_region 79140 79318 . ? . description=trf scaffold_80 ensembl protein_coding_gene 74349 75512 . + . ID=Phyra82917;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000017;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 74349 75512 . + . ID=Phyra82917;Parent=Phyra82917;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 74349 75512 . + 0 ID=Phyra82917;Parent=Phyra82917;rank=1 scaffold_80 . exon 74349 75512 . + . ID=Phyra82917.1;Parent=Phyra82917;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 76189 76674 . - . ID=Phyra82918;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000018;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 76189 76674 . - . ID=Phyra82918;Parent=Phyra82918;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 76189 76674 . - 0 ID=Phyra82918;Parent=Phyra82918;rank=1 scaffold_80 . exon 76189 76674 . - . ID=Phyra82918.1;Parent=Phyra82918;constitutive=1;rank=1 scaffold_80 . exon 70548 70693 . + . ID=Phyra96469.17;Parent=Phyra96469;constitutive=1;ensembl_phase=1;rank=17 scaffold_80 . exon 70745 70934 . + . ID=Phyra96469.18;Parent=Phyra96469;constitutive=1;ensembl_end_phase=1;rank=18 scaffold_80 . exon 70992 71204 . + . ID=Phyra96469.19;Parent=Phyra96469;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=19 scaffold_80 . exon 71232 72435 . + . ID=Phyra96469.20;Parent=Phyra96469;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=20 scaffold_80 . exon 72838 73268 . + . ID=Phyra96469.21;Parent=Phyra96469;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=21 scaffold_80 . exon 73293 73963 . + . ID=Phyra96469.22;Parent=Phyra96469;constitutive=1;ensembl_phase=1;rank=22 scaffold_80 . biological_region 86650 86651 0.999 + . logic_name=eponine scaffold_80 ensembl protein_coding_gene 80212 80697 . + . ID=Phyra82919;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000019;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 80212 80697 . + . ID=Phyra82919;Parent=Phyra82919;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 80212 80697 . + 0 ID=Phyra82919;Parent=Phyra82919;rank=1 scaffold_80 . exon 80212 80697 . + . ID=Phyra82919.1;Parent=Phyra82919;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 84360 85004 . + . ID=Phyra82920;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000020;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 84360 85004 . + . ID=Phyra82920;Parent=Phyra82920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 84360 85004 . + 0 ID=Phyra82920;Parent=Phyra82920;rank=1 scaffold_80 . exon 84360 85004 . + . ID=Phyra82920.1;Parent=Phyra82920;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 86907 88767 . + . ID=Phyra82921;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000021;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 86907 88767 . + . ID=Phyra82921;Parent=Phyra82921;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 86907 87509 . + 0 ID=Phyra82921;Parent=Phyra82921;rank=1 scaffold_80 . exon 86907 87509 . + . ID=Phyra82921.1;Parent=Phyra82921;constitutive=1;rank=1 scaffold_80 . CDS 87634 88767 . + 0 ID=Phyra82921;Parent=Phyra82921;rank=2 scaffold_80 . exon 87634 88767 . + . ID=Phyra82921.2;Parent=Phyra82921;constitutive=1;rank=2 scaffold_80 . repeat_region 90634 90641 . ? . description=dust scaffold_80 . repeat_region 90972 91016 . ? . description=trf scaffold_80 . repeat_region 95584 95702 . ? . description=dust scaffold_80 . repeat_region 95584 95702 . + . description=(CAG)n scaffold_80 . repeat_region 95590 95700 . ? . description=trf scaffold_80 . repeat_region 97562 97630 . ? . description=trf scaffold_80 . repeat_region 97593 97629 . ? . description=trf scaffold_80 ensembl protein_coding_gene 90786 93813 . + . ID=Phyra82922;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000022;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 90786 93813 . + . ID=Phyra82922;Parent=Phyra82922;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 90786 91519 . + 0 ID=Phyra82922;Parent=Phyra82922;rank=1 scaffold_80 . exon 90786 91519 . + . ID=Phyra82922.1;Parent=Phyra82922;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . CDS 91644 91663 . + 0 ID=Phyra82922;Parent=Phyra82922;rank=2 scaffold_80 . exon 91644 91663 . + . ID=Phyra82922.2;Parent=Phyra82922;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_80 . CDS 91979 93813 . + 0 ID=Phyra82922;Parent=Phyra82922;rank=3 scaffold_80 . exon 91979 93813 . + . ID=Phyra82922.3;Parent=Phyra82922;constitutive=1;ensembl_phase=1;rank=3 scaffold_80 ensembl protein_coding_gene 93947 94912 . - . ID=Phyra82923;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000023;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 93947 94912 . - . ID=Phyra82923;Parent=Phyra82923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 93947 94912 . - 0 ID=Phyra82923;Parent=Phyra82923;rank=1 scaffold_80 . exon 93947 94912 . - . ID=Phyra82923.1;Parent=Phyra82923;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 95317 96026 . + . ID=Phyra82924;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000024;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 95317 96026 . + . ID=Phyra82924;Parent=Phyra82924;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 95317 95340 . + 0 ID=Phyra82924;Parent=Phyra82924;rank=1 scaffold_80 . exon 95317 95340 . + . ID=Phyra82924.1;Parent=Phyra82924;constitutive=1;rank=1 scaffold_80 . CDS 95381 95450 . + 0 ID=Phyra82924;Parent=Phyra82924;rank=2 scaffold_80 . exon 95381 95450 . + . ID=Phyra82924.2;Parent=Phyra82924;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_80 . CDS 95494 95726 . + 0 ID=Phyra82924;Parent=Phyra82924;rank=3 scaffold_80 . exon 95494 95726 . + . ID=Phyra82924.3;Parent=Phyra82924;constitutive=1;ensembl_phase=1;rank=3 scaffold_80 . CDS 95937 96026 . + 0 ID=Phyra82924;Parent=Phyra82924;rank=4 scaffold_80 . exon 95937 96026 . + . ID=Phyra82924.4;Parent=Phyra82924;constitutive=1;rank=4 scaffold_80 ensembl protein_coding_gene 96992 98827 . + . ID=Phyra82925;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000025;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 96992 98827 . + . ID=Phyra82925;Parent=Phyra82925;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 96992 98827 . + 0 ID=Phyra82925;Parent=Phyra82925;rank=1 scaffold_80 . exon 96992 98827 . + . ID=Phyra82925.1;Parent=Phyra82925;constitutive=1;rank=1 scaffold_80 . biological_region 103439 103446 0.999 - . logic_name=eponine scaffold_80 . biological_region 103533 103534 0.999 + . logic_name=eponine scaffold_80 . biological_region 103805 103807 0.999 - . logic_name=eponine scaffold_80 . biological_region 103816 103817 0.999 - . logic_name=eponine scaffold_80 ensembl protein_coding_gene 102489 103855 . - . ID=Phyra72065;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_80000005;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 102489 103855 . - . ID=Phyra72065;Parent=Phyra72065;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 102489 102511 . - 0 ID=Phyra72065;Parent=Phyra72065;rank=2 scaffold_80 . exon 102489 102511 . - . ID=Phyra72065.2;Parent=Phyra72065;constitutive=1;ensembl_phase=1;rank=2 scaffold_80 . CDS 102532 103855 . - 0 ID=Phyra72065;Parent=Phyra72065;rank=1 scaffold_80 . exon 102532 103855 . - . ID=Phyra72065.1;Parent=Phyra72065;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_80 ensembl protein_coding_gene 100330 101257 . + . ID=Phyra82926;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000026;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 100330 101257 . + . ID=Phyra82926;Parent=Phyra82926;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 100330 100651 . + 0 ID=Phyra82926;Parent=Phyra82926;rank=1 scaffold_80 . exon 100330 100651 . + . ID=Phyra82926.1;Parent=Phyra82926;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_80 . CDS 100716 101257 . + 0 ID=Phyra82926;Parent=Phyra82926;rank=2 scaffold_80 . exon 100716 101257 . + . ID=Phyra82926.2;Parent=Phyra82926;constitutive=1;ensembl_phase=1;rank=2 scaffold_80 ensembl protein_coding_gene 101418 102201 . + . ID=Phyra82927;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000027;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 101418 102201 . + . ID=Phyra82927;Parent=Phyra82927;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 101418 101548 . + 0 ID=Phyra82927;Parent=Phyra82927;rank=1 scaffold_80 . exon 101418 101548 . + . ID=Phyra82927.1;Parent=Phyra82927;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . CDS 101612 101705 . + 0 ID=Phyra82927;Parent=Phyra82927;rank=2 scaffold_80 . exon 101612 101705 . + . ID=Phyra82927.2;Parent=Phyra82927;constitutive=1;ensembl_phase=2;rank=2 scaffold_80 . CDS 101767 101824 . + 0 ID=Phyra82927;Parent=Phyra82927;rank=3 scaffold_80 . exon 101767 101824 . + . ID=Phyra82927.3;Parent=Phyra82927;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_80 . CDS 102029 102201 . + 0 ID=Phyra82927;Parent=Phyra82927;rank=4 scaffold_80 . exon 102029 102201 . + . ID=Phyra82927.4;Parent=Phyra82927;constitutive=1;ensembl_phase=1;rank=4 scaffold_80 ensembl protein_coding_gene 104518 105609 . + . ID=Phyra82929;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000029;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 104518 105609 . + . ID=Phyra82929;Parent=Phyra82929;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 104518 105609 . + 0 ID=Phyra82929;Parent=Phyra82929;rank=1 scaffold_80 . exon 104518 105609 . + . ID=Phyra82929.1;Parent=Phyra82929;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 105776 108130 . - . ID=Phyra82930;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000030;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 105776 108130 . - . ID=Phyra82930;Parent=Phyra82930;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 105776 108130 . - 0 ID=Phyra82930;Parent=Phyra82930;rank=1 scaffold_80 . exon 105776 108130 . - . ID=Phyra82930.1;Parent=Phyra82930;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 108652 110709 . - . ID=Phyra82931;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000031;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 108652 110709 . - . ID=Phyra82931;Parent=Phyra82931;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 108652 108783 . - 0 ID=Phyra82931;Parent=Phyra82931;rank=5 scaffold_80 . exon 108652 108783 . - . ID=Phyra82931.5;Parent=Phyra82931;constitutive=1;rank=5 scaffold_80 . CDS 108866 109474 . - 0 ID=Phyra82931;Parent=Phyra82931;rank=4 scaffold_80 . CDS 109547 109784 . - 0 ID=Phyra82931;Parent=Phyra82931;rank=3 scaffold_80 . CDS 109854 109948 . - 0 ID=Phyra82931;Parent=Phyra82931;rank=2 scaffold_80 . CDS 110029 110709 . - 0 ID=Phyra82931;Parent=Phyra82931;rank=1 scaffold_80 . repeat_region 110576 110626 . ? . description=trf scaffold_80 . repeat_region 110862 110909 . ? . description=trf scaffold_80 . repeat_region 114234 114241 . ? . description=dust scaffold_80 . repeat_region 117300 117307 . ? . description=dust scaffold_80 . repeat_region 117493 117511 . ? . description=dust scaffold_80 . exon 108866 109474 . - . ID=Phyra82931.4;Parent=Phyra82931;constitutive=1;rank=4 scaffold_80 . exon 109547 109784 . - . ID=Phyra82931.3;Parent=Phyra82931;constitutive=1;ensembl_phase=2;rank=3 scaffold_80 . exon 109854 109948 . - . ID=Phyra82931.2;Parent=Phyra82931;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_80 . exon 110029 110709 . - . ID=Phyra82931.1;Parent=Phyra82931;constitutive=1;rank=1 scaffold_80 . biological_region 119266 119267 0.999 + . logic_name=eponine scaffold_80 ensembl protein_coding_gene 123272 124993 . - . ID=Phyra82932;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000032;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 123272 124993 . - . ID=Phyra82932;Parent=Phyra82932;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 123272 123594 . - 0 ID=Phyra82932;Parent=Phyra82932;rank=4 scaffold_80 . exon 123272 123594 . - . ID=Phyra82932.4;Parent=Phyra82932;constitutive=1;ensembl_phase=1;rank=4 scaffold_80 . CDS 123663 124404 . - 0 ID=Phyra82932;Parent=Phyra82932;rank=3 scaffold_80 . exon 123663 124404 . - . ID=Phyra82932.3;Parent=Phyra82932;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_80 . CDS 124425 124589 . - 0 ID=Phyra82932;Parent=Phyra82932;rank=2 scaffold_80 . exon 124425 124589 . - . ID=Phyra82932.2;Parent=Phyra82932;constitutive=1;rank=2 scaffold_80 . CDS 124781 124993 . - 0 ID=Phyra82932;Parent=Phyra82932;rank=1 scaffold_80 . exon 124781 124993 . - . ID=Phyra82932.1;Parent=Phyra82932;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 125926 126846 . + . ID=Phyra82933;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000033;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 125926 126846 . + . ID=Phyra82933;Parent=Phyra82933;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 125926 126846 . + 0 ID=Phyra82933;Parent=Phyra82933;rank=1 scaffold_80 . exon 125926 126846 . + . ID=Phyra82933.1;Parent=Phyra82933;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 127774 130023 . + . ID=Phyra82934;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000034;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 127774 130023 . + . ID=Phyra82934;Parent=Phyra82934;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 127774 130023 . + 0 ID=Phyra82934;Parent=Phyra82934;rank=1 scaffold_80 . exon 127774 130023 . + . ID=Phyra82934.1;Parent=Phyra82934;constitutive=1;rank=1 scaffold_80 . repeat_region 132902 132942 . ? . description=trf scaffold_80 . repeat_region 136558 136631 . ? . description=trf scaffold_80 . repeat_region 138429 138489 . ? . description=dust scaffold_80 . repeat_region 138430 138490 . ? . description=trf scaffold_80 ensembl protein_coding_gene 136546 138600 . - . ID=Phyra72066;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_80000006;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 136546 138600 . - . ID=Phyra72066;Parent=Phyra72066;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 136546 138600 . - 0 ID=Phyra72066;Parent=Phyra72066;rank=1 scaffold_80 . exon 136546 138600 . - . ID=Phyra72066.1;Parent=Phyra72066;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 130318 131449 . - . ID=Phyra82935;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000035;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 130318 131449 . - . ID=Phyra82935;Parent=Phyra82935;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 130318 130462 . - 0 ID=Phyra82935;Parent=Phyra82935;rank=6 scaffold_80 . exon 130318 130462 . - . ID=Phyra82935.6;Parent=Phyra82935;constitutive=1;ensembl_phase=2;rank=6 scaffold_80 . CDS 130544 130849 . - 0 ID=Phyra82935;Parent=Phyra82935;rank=5 scaffold_80 . exon 130544 130849 . - . ID=Phyra82935.5;Parent=Phyra82935;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_80 . CDS 130922 131029 . - 0 ID=Phyra82935;Parent=Phyra82935;rank=4 scaffold_80 . exon 130922 131029 . - . ID=Phyra82935.4;Parent=Phyra82935;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_80 . CDS 131056 131091 . - 0 ID=Phyra82935;Parent=Phyra82935;rank=3 scaffold_80 . exon 131056 131091 . - . ID=Phyra82935.3;Parent=Phyra82935;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_80 . CDS 131168 131255 . - 0 ID=Phyra82935;Parent=Phyra82935;rank=2 scaffold_80 . exon 131168 131255 . - . ID=Phyra82935.2;Parent=Phyra82935;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_80 . CDS 131434 131449 . - 0 ID=Phyra82935;Parent=Phyra82935;rank=1 scaffold_80 . exon 131434 131449 . - . ID=Phyra82935.1;Parent=Phyra82935;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_80 ensembl protein_coding_gene 133120 135540 . + . ID=Phyra82936;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000036;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 133120 135540 . + . ID=Phyra82936;Parent=Phyra82936;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 133120 135540 . + 0 ID=Phyra82936;Parent=Phyra82936;rank=1 scaffold_80 . exon 133120 135540 . + . ID=Phyra82936.1;Parent=Phyra82936;constitutive=1;rank=1 scaffold_80 . biological_region 138845 138847 0.999 + . logic_name=eponine scaffold_80 . repeat_region 147763 147875 . + . description=(TG)n scaffold_80 ensembl protein_coding_gene 138847 142296 . + . ID=Phyra82938;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000038;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 138847 142296 . + . ID=Phyra82938;Parent=Phyra82938;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 138847 142296 . + 0 ID=Phyra82938;Parent=Phyra82938;rank=1 scaffold_80 . exon 138847 142296 . + . ID=Phyra82938.1;Parent=Phyra82938;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 143820 144644 . + . ID=Phyra82939;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000039;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 143820 144644 . + . ID=Phyra82939;Parent=Phyra82939;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 143820 144644 . + 0 ID=Phyra82939;Parent=Phyra82939;rank=1 scaffold_80 . exon 143820 144644 . + . ID=Phyra82939.1;Parent=Phyra82939;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 145306 145701 . - . ID=Phyra82940;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000040;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 145306 145701 . - . ID=Phyra82940;Parent=Phyra82940;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 145306 145347 . - 0 ID=Phyra82940;Parent=Phyra82940;rank=2 scaffold_80 . exon 145306 145347 . - . ID=Phyra82940.2;Parent=Phyra82940;constitutive=1;rank=2 scaffold_80 . CDS 145435 145701 . - 0 ID=Phyra82940;Parent=Phyra82940;rank=1 scaffold_80 . exon 145435 145701 . - . ID=Phyra82940.1;Parent=Phyra82940;constitutive=1;rank=1 scaffold_80 . repeat_region 153474 153486 . ? . description=dust scaffold_80 . repeat_region 154010 154017 . ? . description=dust scaffold_80 . repeat_region 155510 155520 . ? . description=dust scaffold_80 . repeat_region 155749 155808 . ? . description=trf scaffold_80 . repeat_region 156853 156867 . ? . description=dust scaffold_80 ensembl protein_coding_gene 148806 149532 . - . ID=Phyra82941;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000041;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 148806 149532 . - . ID=Phyra82941;Parent=Phyra82941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 148806 148820 . - 0 ID=Phyra82941;Parent=Phyra82941;rank=3 scaffold_80 . exon 148806 148820 . - . ID=Phyra82941.3;Parent=Phyra82941;constitutive=1;rank=3 scaffold_80 . CDS 148901 149483 . - 0 ID=Phyra82941;Parent=Phyra82941;rank=2 scaffold_80 . exon 148901 149483 . - . ID=Phyra82941.2;Parent=Phyra82941;constitutive=1;ensembl_phase=2;rank=2 scaffold_80 . CDS 149519 149532 . - 0 ID=Phyra82941;Parent=Phyra82941;rank=1 scaffold_80 . exon 149519 149532 . - . ID=Phyra82941.1;Parent=Phyra82941;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 ensembl protein_coding_gene 153088 154514 . + . ID=Phyra82942;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000042;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 153088 154514 . + . ID=Phyra82942;Parent=Phyra82942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 153088 153411 . + 0 ID=Phyra82942;Parent=Phyra82942;rank=1 scaffold_80 . exon 153088 153411 . + . ID=Phyra82942.1;Parent=Phyra82942;constitutive=1;rank=1 scaffold_80 . CDS 153490 153626 . + 0 ID=Phyra82942;Parent=Phyra82942;rank=2 scaffold_80 . exon 153490 153626 . + . ID=Phyra82942.2;Parent=Phyra82942;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_80 . CDS 153695 153760 . + 0 ID=Phyra82942;Parent=Phyra82942;rank=3 scaffold_80 . exon 153695 153760 . + . ID=Phyra82942.3;Parent=Phyra82942;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_80 . CDS 153783 153949 . + 0 ID=Phyra82942;Parent=Phyra82942;rank=4 scaffold_80 . exon 153783 153949 . + . ID=Phyra82942.4;Parent=Phyra82942;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_80 . CDS 154009 154514 . + 0 ID=Phyra82942;Parent=Phyra82942;rank=5 scaffold_80 . exon 154009 154514 . + . ID=Phyra82942.5;Parent=Phyra82942;constitutive=1;ensembl_phase=1;rank=5 scaffold_80 ensembl protein_coding_gene 160423 161638 . - . ID=Phyra82943;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000043;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 160423 161638 . - . ID=Phyra82943;Parent=Phyra82943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 160423 160945 . - 0 ID=Phyra82943;Parent=Phyra82943;rank=3 scaffold_80 . exon 160423 160945 . - . ID=Phyra82943.3;Parent=Phyra82943;constitutive=1;ensembl_phase=2;rank=3 scaffold_80 . CDS 161230 161570 . - 0 ID=Phyra82943;Parent=Phyra82943;rank=2 scaffold_80 . exon 161230 161570 . - . ID=Phyra82943.2;Parent=Phyra82943;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_80 . CDS 161636 161638 . - 0 ID=Phyra82943;Parent=Phyra82943;rank=1 scaffold_80 . exon 161636 161638 . - . ID=Phyra82943.1;Parent=Phyra82943;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 164753 166198 . + . ID=Phyra82944;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000044;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 164753 166198 . + . ID=Phyra82944;Parent=Phyra82944;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 164753 164941 . + 0 ID=Phyra82944;Parent=Phyra82944;rank=1 scaffold_80 . exon 164753 164941 . + . ID=Phyra82944.1;Parent=Phyra82944;constitutive=1;rank=1 scaffold_80 . CDS 165001 165210 . + 0 ID=Phyra82944;Parent=Phyra82944;rank=2 scaffold_80 . exon 165001 165210 . + . ID=Phyra82944.2;Parent=Phyra82944;constitutive=1;rank=2 scaffold_80 . CDS 165279 165455 . + 0 ID=Phyra82944;Parent=Phyra82944;rank=3 scaffold_80 . exon 165279 165455 . + . ID=Phyra82944.3;Parent=Phyra82944;constitutive=1;rank=3 scaffold_80 . CDS 165513 165649 . + 0 ID=Phyra82944;Parent=Phyra82944;rank=4 scaffold_80 . exon 165513 165649 . + . ID=Phyra82944.4;Parent=Phyra82944;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_80 . CDS 165716 165753 . + 0 ID=Phyra82944;Parent=Phyra82944;rank=5 scaffold_80 . exon 165716 165753 . + . ID=Phyra82944.5;Parent=Phyra82944;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_80 . CDS 165888 166198 . + 0 ID=Phyra82944;Parent=Phyra82944;rank=6 scaffold_80 . exon 165888 166198 . + . ID=Phyra82944.6;Parent=Phyra82944;constitutive=1;ensembl_phase=1;rank=6 scaffold_80 . biological_region 169471 169473 0.999 - . logic_name=eponine scaffold_80 . repeat_region 174305 174791 . ? . description=dust scaffold_80 . biological_region 175768 175769 0.999 + . logic_name=eponine scaffold_80 . biological_region 176360 176363 0.999 - . logic_name=eponine scaffold_80 . biological_region 176419 176419 0.999 + . logic_name=eponine scaffold_80 . biological_region 176646 176647 0.999 + . logic_name=eponine scaffold_80 . biological_region 177067 177071 0.999 + . logic_name=eponine scaffold_80 . biological_region 177328 177330 0.999 + . logic_name=eponine scaffold_80 . biological_region 177350 177351 0.999 - . logic_name=eponine scaffold_80 . biological_region 177409 177415 0.999 - . logic_name=eponine scaffold_80 . biological_region 177570 177573 0.999 - . logic_name=eponine scaffold_80 . biological_region 177624 177627 0.999 - . logic_name=eponine scaffold_80 ensembl protein_coding_gene 168369 169225 . - . ID=Phyra82945;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000045;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 168369 169225 . - . ID=Phyra82945;Parent=Phyra82945;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 168369 169094 . - 0 ID=Phyra82945;Parent=Phyra82945;rank=2 scaffold_80 . exon 168369 169094 . - . ID=Phyra82945.2;Parent=Phyra82945;constitutive=1;rank=2 scaffold_80 . CDS 169223 169225 . - 0 ID=Phyra82945;Parent=Phyra82945;rank=1 scaffold_80 . exon 169223 169225 . - . ID=Phyra82945.1;Parent=Phyra82945;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 169415 171760 . + . ID=Phyra82946;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000046;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 169415 171760 . + . ID=Phyra82946;Parent=Phyra82946;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 169415 171760 . + 0 ID=Phyra82946;Parent=Phyra82946;rank=1 scaffold_80 . exon 169415 171760 . + . ID=Phyra82946.1;Parent=Phyra82946;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 171878 178365 . - . ID=Phyra96474;biotype=protein_coding;external_name=C_scaffold_80000013;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 171878 178365 . - . ID=Phyra96474;Parent=Phyra96474;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 171878 172281 . - 0 ID=Phyra96474;Parent=Phyra96474;rank=8 scaffold_80 . exon 171878 172281 . - . ID=Phyra96474.8;Parent=Phyra96474;constitutive=1;ensembl_phase=1;rank=8 scaffold_80 . CDS 172381 173922 . - 0 ID=Phyra96474;Parent=Phyra96474;rank=7 scaffold_80 . exon 172381 173922 . - . ID=Phyra96474.7;Parent=Phyra96474;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_80 . CDS 173942 174022 . - 0 ID=Phyra96474;Parent=Phyra96474;rank=6 scaffold_80 . exon 173942 174022 . - . ID=Phyra96474.6;Parent=Phyra96474;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_80 . CDS 174823 176481 . - 0 ID=Phyra96474;Parent=Phyra96474;rank=5 scaffold_80 . exon 174823 176481 . - . ID=Phyra96474.5;Parent=Phyra96474;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_80 . CDS 176566 177378 . - 0 ID=Phyra96474;Parent=Phyra96474;rank=4 scaffold_80 . exon 176566 177378 . - . ID=Phyra96474.4;Parent=Phyra96474;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_80 . CDS 177455 177592 . - 0 ID=Phyra96474;Parent=Phyra96474;rank=3 scaffold_80 . exon 177455 177592 . - . ID=Phyra96474.3;Parent=Phyra96474;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_80 . CDS 177755 177759 . - 0 ID=Phyra96474;Parent=Phyra96474;rank=2 scaffold_80 . exon 177755 177759 . - . ID=Phyra96474.2;Parent=Phyra96474;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_80 . CDS 178094 178365 . - 0 ID=Phyra96474;Parent=Phyra96474;rank=1 scaffold_80 ensembl protein_coding_gene 183603 185170 . - . ID=Phyra82949;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000049;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 183603 185170 . - . ID=Phyra82949;Parent=Phyra82949;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 183603 184849 . - 0 ID=Phyra82949;Parent=Phyra82949;rank=2 scaffold_80 . exon 183603 184849 . - . ID=Phyra82949.2;Parent=Phyra82949;constitutive=1;ensembl_phase=1;rank=2 scaffold_80 . CDS 184936 185170 . - 0 ID=Phyra82949;Parent=Phyra82949;rank=1 scaffold_80 . exon 184936 185170 . - . ID=Phyra82949.1;Parent=Phyra82949;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_80 . exon 178094 178365 . - . ID=Phyra96474.1;Parent=Phyra96474;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . repeat_region 190666 190706 . ? . description=trf scaffold_80 . biological_region 192268 192268 0.999 + . logic_name=eponine scaffold_80 . biological_region 192742 192745 0.999 + . logic_name=eponine scaffold_80 . biological_region 192868 192871 0.999 - . logic_name=eponine scaffold_80 . repeat_region 193138 193180 . ? . description=trf scaffold_80 . biological_region 195216 195218 0.999 + . logic_name=eponine scaffold_80 ensembl protein_coding_gene 193235 193751 . + . ID=Phyra72067;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_80000007;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 193235 193751 . + . ID=Phyra72067;Parent=Phyra72067;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 193235 193258 . + 0 ID=Phyra72067;Parent=Phyra72067;rank=1 scaffold_80 . exon 193235 193258 . + . ID=Phyra72067.1;Parent=Phyra72067;constitutive=1;rank=1 scaffold_80 . CDS 193289 193468 . + 0 ID=Phyra72067;Parent=Phyra72067;rank=2 scaffold_80 . exon 193289 193468 . + . ID=Phyra72067.2;Parent=Phyra72067;constitutive=1;rank=2 scaffold_80 . CDS 193536 193751 . + 0 ID=Phyra72067;Parent=Phyra72067;rank=3 scaffold_80 . exon 193536 193751 . + . ID=Phyra72067.3;Parent=Phyra72067;constitutive=1;rank=3 scaffold_80 ensembl protein_coding_gene 197413 198247 . - . ID=Phyra72068;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_80000008;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 197413 198247 . - . ID=Phyra72068;Parent=Phyra72068;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 197413 198138 . - 0 ID=Phyra72068;Parent=Phyra72068;rank=2 scaffold_80 . exon 197413 198138 . - . ID=Phyra72068.2;Parent=Phyra72068;constitutive=1;rank=2 scaffold_80 . CDS 198173 198247 . - 0 ID=Phyra72068;Parent=Phyra72068;rank=1 scaffold_80 ensembl protein_coding_gene 189230 189762 . + . ID=Phyra82950;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000050;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 189230 189762 . + . ID=Phyra82950;Parent=Phyra82950;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 189230 189599 . + 0 ID=Phyra82950;Parent=Phyra82950;rank=1 scaffold_80 . exon 189230 189599 . + . ID=Phyra82950.1;Parent=Phyra82950;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_80 . CDS 189692 189762 . + 0 ID=Phyra82950;Parent=Phyra82950;rank=2 scaffold_80 . exon 189692 189762 . + . ID=Phyra82950.2;Parent=Phyra82950;constitutive=1;ensembl_phase=1;rank=2 scaffold_80 ensembl protein_coding_gene 190499 192866 . - . ID=Phyra82951;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000051;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 190499 192866 . - . ID=Phyra82951;Parent=Phyra82951;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 190499 191017 . - 0 ID=Phyra82951;Parent=Phyra82951;rank=4 scaffold_80 . exon 190499 191017 . - . ID=Phyra82951.4;Parent=Phyra82951;constitutive=1;rank=4 scaffold_80 . CDS 191089 191683 . - 0 ID=Phyra82951;Parent=Phyra82951;rank=3 scaffold_80 . exon 191089 191683 . - . ID=Phyra82951.3;Parent=Phyra82951;constitutive=1;ensembl_phase=2;rank=3 scaffold_80 . CDS 191742 191798 . - 0 ID=Phyra82951;Parent=Phyra82951;rank=2 scaffold_80 . exon 191742 191798 . - . ID=Phyra82951.2;Parent=Phyra82951;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_80 . CDS 191863 192866 . - 0 ID=Phyra82951;Parent=Phyra82951;rank=1 scaffold_80 . exon 191863 192866 . - . ID=Phyra82951.1;Parent=Phyra82951;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 ensembl protein_coding_gene 193894 194802 . - . ID=Phyra82953;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000053;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 193894 194802 . - . ID=Phyra82953;Parent=Phyra82953;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 193894 194802 . - 0 ID=Phyra82953;Parent=Phyra82953;rank=1 scaffold_80 . exon 193894 194802 . - . ID=Phyra82953.1;Parent=Phyra82953;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 195131 196469 . + . ID=Phyra82954;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000054;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 195131 196469 . + . ID=Phyra82954;Parent=Phyra82954;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 195131 195312 . + 0 ID=Phyra82954;Parent=Phyra82954;rank=1 scaffold_80 . exon 195131 195312 . + . ID=Phyra82954.1;Parent=Phyra82954;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . CDS 195431 195482 . + 0 ID=Phyra82954;Parent=Phyra82954;rank=2 scaffold_80 . exon 195431 195482 . + . ID=Phyra82954.2;Parent=Phyra82954;constitutive=1;ensembl_phase=2;rank=2 scaffold_80 . CDS 195688 195742 . + 0 ID=Phyra82954;Parent=Phyra82954;rank=3 scaffold_80 . exon 195688 195742 . + . ID=Phyra82954.3;Parent=Phyra82954;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_80 . CDS 195814 196469 . + 0 ID=Phyra82954;Parent=Phyra82954;rank=4 scaffold_80 . exon 195814 196469 . + . ID=Phyra82954.4;Parent=Phyra82954;constitutive=1;ensembl_phase=1;rank=4 scaffold_80 . repeat_region 199613 199625 . ? . description=dust scaffold_80 . exon 198173 198247 . - . ID=Phyra72068.1;Parent=Phyra72068;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 198394 199863 . + . ID=Phyra82956;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000056;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 198394 199863 . + . ID=Phyra82956;Parent=Phyra82956;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 198394 198552 . + 0 ID=Phyra82956;Parent=Phyra82956;rank=1 scaffold_80 . exon 198394 198552 . + . ID=Phyra82956.1;Parent=Phyra82956;constitutive=1;rank=1 scaffold_80 . CDS 198630 199588 . + 0 ID=Phyra82956;Parent=Phyra82956;rank=2 scaffold_80 . exon 198630 199588 . + . ID=Phyra82956.2;Parent=Phyra82956;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_80 . CDS 199662 199863 . + 0 ID=Phyra82956;Parent=Phyra82956;rank=3 scaffold_80 . exon 199662 199863 . + . ID=Phyra82956.3;Parent=Phyra82956;constitutive=1;ensembl_phase=2;rank=3 scaffold_80 ensembl protein_coding_gene 200091 201672 . - . ID=Phyra82957;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000057;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 200091 201672 . - . ID=Phyra82957;Parent=Phyra82957;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 200091 201575 . - 0 ID=Phyra82957;Parent=Phyra82957;rank=2 scaffold_80 . exon 200091 201575 . - . ID=Phyra82957.2;Parent=Phyra82957;constitutive=1;rank=2 scaffold_80 . CDS 201601 201672 . - 0 ID=Phyra82957;Parent=Phyra82957;rank=1 scaffold_80 . exon 201601 201672 . - . ID=Phyra82957.1;Parent=Phyra82957;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 202052 203511 . + . ID=Phyra82958;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000058;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 202052 203511 . + . ID=Phyra82958;Parent=Phyra82958;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 202052 202238 . + 0 ID=Phyra82958;Parent=Phyra82958;rank=1 scaffold_80 . exon 202052 202238 . + . ID=Phyra82958.1;Parent=Phyra82958;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_80 . CDS 202294 202501 . + 0 ID=Phyra82958;Parent=Phyra82958;rank=2 scaffold_80 . exon 202294 202501 . + . ID=Phyra82958.2;Parent=Phyra82958;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_80 . CDS 202562 202748 . + 0 ID=Phyra82958;Parent=Phyra82958;rank=3 scaffold_80 . exon 202562 202748 . + . ID=Phyra82958.3;Parent=Phyra82958;constitutive=1;ensembl_phase=2;rank=3 scaffold_80 . CDS 202802 203057 . + 0 ID=Phyra82958;Parent=Phyra82958;rank=4 scaffold_80 . exon 202802 203057 . + . ID=Phyra82958.4;Parent=Phyra82958;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_80 . CDS 203123 203334 . + 0 ID=Phyra82958;Parent=Phyra82958;rank=5 scaffold_80 . exon 203123 203334 . + . ID=Phyra82958.5;Parent=Phyra82958;constitutive=1;ensembl_phase=1;rank=5 scaffold_80 . CDS 203386 203511 . + 0 ID=Phyra82958;Parent=Phyra82958;rank=6 scaffold_80 . exon 203386 203511 . + . ID=Phyra82958.6;Parent=Phyra82958;constitutive=1;rank=6 scaffold_80 ensembl protein_coding_gene 203590 205528 . - . ID=Phyra82959;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000059;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 203590 205528 . - . ID=Phyra82959;Parent=Phyra82959;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 203590 204066 . - 0 ID=Phyra82959;Parent=Phyra82959;rank=2 scaffold_80 . exon 203590 204066 . - . ID=Phyra82959.2;Parent=Phyra82959;constitutive=1;rank=2 scaffold_80 . CDS 204155 205528 . - 0 ID=Phyra82959;Parent=Phyra82959;rank=1 scaffold_80 . exon 204155 205528 . - . ID=Phyra82959.1;Parent=Phyra82959;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 205707 207656 . + . ID=Phyra82960;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000060;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 205707 207656 . + . ID=Phyra82960;Parent=Phyra82960;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 205707 207656 . + 0 ID=Phyra82960;Parent=Phyra82960;rank=1 scaffold_80 . exon 205707 207656 . + . ID=Phyra82960.1;Parent=Phyra82960;constitutive=1;rank=1 scaffold_80 . biological_region 211223 211225 0.999 - . logic_name=eponine scaffold_80 . biological_region 212075 212078 0.999 + . logic_name=eponine scaffold_80 . biological_region 212212 212213 0.999 + . logic_name=eponine scaffold_80 . repeat_region 212260 212289 . ? . description=trf scaffold_80 . repeat_region 212261 212289 . ? . description=trf scaffold_80 ensembl protein_coding_gene 208091 209021 . + . ID=Phyra53476;biotype=protein_coding;external_name=gwEuk.80.15.1;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 208091 209021 . + . ID=Phyra53476;Parent=Phyra53476;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 208091 208720 . + 0 ID=Phyra53476;Parent=Phyra53476;rank=1 scaffold_80 . exon 208091 208720 . + . ID=Phyra53476.1;Parent=Phyra53476;constitutive=1;rank=1 scaffold_80 . CDS 208785 209021 . + 0 ID=Phyra53476;Parent=Phyra53476;rank=2 scaffold_80 . exon 208785 209021 . + . ID=Phyra53476.2;Parent=Phyra53476;constitutive=1;rank=2 scaffold_80 ensembl protein_coding_gene 216385 216687 . + . ID=Phyra53480;biotype=protein_coding;external_name=gwEuk.80.19.1;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 216385 216687 . + . ID=Phyra53480;Parent=Phyra53480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 216385 216687 . + 0 ID=Phyra53480;Parent=Phyra53480;rank=1 scaffold_80 . exon 216385 216687 . + . ID=Phyra53480.1;Parent=Phyra53480;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 210459 212396 . - . ID=Phyra82962;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000062;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 210459 212396 . - . ID=Phyra82962;Parent=Phyra82962;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 210459 212396 . - 0 ID=Phyra82962;Parent=Phyra82962;rank=1 scaffold_80 . exon 210459 212396 . - . ID=Phyra82962.1;Parent=Phyra82962;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 212990 213778 . + . ID=Phyra82963;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_80000063;logic_name=jgi_phyra1 scaffold_80 ensembl transcript 212990 213778 . + . ID=Phyra82963;Parent=Phyra82963;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_80 . CDS 212990 213778 . + 0 ID=Phyra82963;Parent=Phyra82963;rank=1 scaffold_80 . exon 212990 213778 . + . ID=Phyra82963.1;Parent=Phyra82963;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_79 1 220511 scaffold_79 . repeat_region 23 71 . + . description=(CAGCT)n scaffold_79 . repeat_region 29 71 . ? . description=trf scaffold_79 . repeat_region 29 88 . ? . description=dust scaffold_79 . repeat_region 533 570 . ? . description=trf scaffold_79 . repeat_region 580 605 . ? . description=trf scaffold_79 . biological_region 9480 9486 0.999 + . logic_name=eponine scaffold_79 . biological_region 9502 9507 0.999 + . logic_name=eponine scaffold_79 ensembl protein_coding_gene 3264 4432 . + . ID=Phyra82857;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000001;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 3264 4432 . + . ID=Phyra82857;Parent=Phyra82857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 3264 3597 . + 0 ID=Phyra82857;Parent=Phyra82857;rank=1 scaffold_79 . exon 3264 3597 . + . ID=Phyra82857.1;Parent=Phyra82857;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_79 . CDS 3624 4432 . + 0 ID=Phyra82857;Parent=Phyra82857;rank=2 scaffold_79 . exon 3624 4432 . + . ID=Phyra82857.2;Parent=Phyra82857;constitutive=1;ensembl_phase=1;rank=2 scaffold_79 ensembl protein_coding_gene 9010 9775 . + . ID=Phyra82858;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000002;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 9010 9775 . + . ID=Phyra82858;Parent=Phyra82858;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 9010 9334 . + 0 ID=Phyra82858;Parent=Phyra82858;rank=1 scaffold_79 . exon 9010 9334 . + . ID=Phyra82858.1;Parent=Phyra82858;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_79 . CDS 9426 9775 . + 0 ID=Phyra82858;Parent=Phyra82858;rank=2 scaffold_79 . exon 9426 9775 . + . ID=Phyra82858.2;Parent=Phyra82858;constitutive=1;ensembl_phase=1;rank=2 scaffold_79 ensembl protein_coding_gene 10320 10961 . - . ID=Phyra72058;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_79000001;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 10320 10961 . - . ID=Phyra72058;Parent=Phyra72058;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 10320 10961 . - 0 ID=Phyra72058;Parent=Phyra72058;rank=1 scaffold_79 . exon 10320 10961 . - . ID=Phyra72058.1;Parent=Phyra72058;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 12076 16169 . + . ID=Phyra82860;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000004;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 12076 16169 . + . ID=Phyra82860;Parent=Phyra82860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 12076 12260 . + 0 ID=Phyra82860;Parent=Phyra82860;rank=1 scaffold_79 . exon 12076 12260 . + . ID=Phyra82860.1;Parent=Phyra82860;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_79 . CDS 12357 13721 . + 0 ID=Phyra82860;Parent=Phyra82860;rank=2 scaffold_79 . exon 12357 13721 . + . ID=Phyra82860.2;Parent=Phyra82860;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_79 . CDS 13999 14044 . + 0 ID=Phyra82860;Parent=Phyra82860;rank=3 scaffold_79 . exon 13999 14044 . + . ID=Phyra82860.3;Parent=Phyra82860;constitutive=1;ensembl_phase=2;rank=3 scaffold_79 . CDS 14108 15789 . + 0 ID=Phyra82860;Parent=Phyra82860;rank=4 scaffold_79 . exon 14108 15789 . + . ID=Phyra82860.4;Parent=Phyra82860;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_79 . CDS 15878 16169 . + 0 ID=Phyra82860;Parent=Phyra82860;rank=5 scaffold_79 . exon 15878 16169 . + . ID=Phyra82860.5;Parent=Phyra82860;constitutive=1;ensembl_phase=2;rank=5 scaffold_79 ensembl protein_coding_gene 17716 18231 . + . ID=Phyra82861;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000005;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 17716 18231 . + . ID=Phyra82861;Parent=Phyra82861;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 17716 18231 . + 0 ID=Phyra82861;Parent=Phyra82861;rank=1 scaffold_79 . exon 17716 18231 . + . ID=Phyra82861.1;Parent=Phyra82861;constitutive=1;rank=1 scaffold_79 . repeat_region 19175 19224 . ? . description=dust scaffold_79 . biological_region 19838 19840 0.999 + . logic_name=eponine scaffold_79 . biological_region 20177 20178 0.999 + . logic_name=eponine scaffold_79 . biological_region 20610 20612 0.999 - . logic_name=eponine scaffold_79 . biological_region 20670 20674 0.999 - . logic_name=eponine scaffold_79 . biological_region 20725 20729 0.999 + . logic_name=eponine scaffold_79 . biological_region 20842 20847 0.999 + . logic_name=eponine scaffold_79 . biological_region 20927 20930 0.999 + . logic_name=eponine scaffold_79 . biological_region 21357 21358 0.999 + . logic_name=eponine scaffold_79 . repeat_region 21787 21798 . ? . description=dust scaffold_79 . repeat_region 22783 22790 . ? . description=dust scaffold_79 . biological_region 23220 23221 0.999 - . logic_name=eponine scaffold_79 . biological_region 23648 23651 0.999 - . logic_name=eponine scaffold_79 . biological_region 23731 23736 0.999 - . logic_name=eponine scaffold_79 . biological_region 23849 23853 0.999 - . logic_name=eponine scaffold_79 . biological_region 23904 23908 0.999 + . logic_name=eponine scaffold_79 . biological_region 23966 23968 0.999 + . logic_name=eponine scaffold_79 . biological_region 24400 24401 0.999 - . logic_name=eponine scaffold_79 . biological_region 24736 24742 0.999 - . logic_name=eponine scaffold_79 ensembl protein_coding_gene 20731 21648 . + . ID=Phyra82862;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000006;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 20731 21648 . + . ID=Phyra82862;Parent=Phyra82862;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 20731 21648 . + 0 ID=Phyra82862;Parent=Phyra82862;rank=1 scaffold_79 . exon 20731 21648 . + . ID=Phyra82862.1;Parent=Phyra82862;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 22929 23849 . - . ID=Phyra82863;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000007;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 22929 23849 . - . ID=Phyra82863;Parent=Phyra82863;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 22929 23849 . - 0 ID=Phyra82863;Parent=Phyra82863;rank=1 scaffold_79 . exon 22929 23849 . - . ID=Phyra82863.1;Parent=Phyra82863;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 25647 26228 . - . ID=Phyra82864;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000008;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 25647 26228 . - . ID=Phyra82864;Parent=Phyra82864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 25647 26228 . - 0 ID=Phyra82864;Parent=Phyra82864;rank=1 scaffold_79 . exon 25647 26228 . - . ID=Phyra82864.1;Parent=Phyra82864;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 32636 34018 . + . ID=Phyra72059;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_79000002;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 32636 34018 . + . ID=Phyra72059;Parent=Phyra72059;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 32636 34018 . + 0 ID=Phyra72059;Parent=Phyra72059;rank=1 scaffold_79 . exon 32636 34018 . + . ID=Phyra72059.1;Parent=Phyra72059;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 34268 35300 . - . ID=Phyra82866;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000010;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 34268 35300 . - . ID=Phyra82866;Parent=Phyra82866;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 34268 34423 . - 0 ID=Phyra82866;Parent=Phyra82866;rank=2 scaffold_79 . exon 34268 34423 . - . ID=Phyra82866.2;Parent=Phyra82866;constitutive=1;rank=2 scaffold_79 . CDS 34506 35300 . - 0 ID=Phyra82866;Parent=Phyra82866;rank=1 scaffold_79 . exon 34506 35300 . - . ID=Phyra82866.1;Parent=Phyra82866;constitutive=1;rank=1 scaffold_79 . repeat_region 44257 44561 . + . description=GypsyPi-1c_LTR scaffold_79 . repeat_region 47745 48195 . + . description=GypsyPi-1c_I-int scaffold_79 ensembl protein_coding_gene 38965 39992 . - . ID=Phyra82867;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000011;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 38965 39992 . - . ID=Phyra82867;Parent=Phyra82867;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 38965 39117 . - 0 ID=Phyra82867;Parent=Phyra82867;rank=2 scaffold_79 . exon 38965 39117 . - . ID=Phyra82867.2;Parent=Phyra82867;constitutive=1;rank=2 scaffold_79 . CDS 39201 39992 . - 0 ID=Phyra82867;Parent=Phyra82867;rank=1 scaffold_79 . exon 39201 39992 . - . ID=Phyra82867.1;Parent=Phyra82867;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 40932 41954 . + . ID=Phyra82868;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000012;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 40932 41954 . + . ID=Phyra82868;Parent=Phyra82868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 40932 41726 . + 0 ID=Phyra82868;Parent=Phyra82868;rank=1 scaffold_79 . exon 40932 41726 . + . ID=Phyra82868.1;Parent=Phyra82868;constitutive=1;rank=1 scaffold_79 . CDS 41805 41954 . + 0 ID=Phyra82868;Parent=Phyra82868;rank=2 scaffold_79 . exon 41805 41954 . + . ID=Phyra82868.2;Parent=Phyra82868;constitutive=1;rank=2 scaffold_79 ensembl protein_coding_gene 42793 43716 . - . ID=Phyra82869;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000013;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 42793 43716 . - . ID=Phyra82869;Parent=Phyra82869;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 42793 43716 . - 0 ID=Phyra82869;Parent=Phyra82869;rank=1 scaffold_79 . exon 42793 43716 . - . ID=Phyra82869.1;Parent=Phyra82869;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 47672 50402 . + . ID=Phyra82870;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000014;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 47672 50402 . + . ID=Phyra82870;Parent=Phyra82870;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 47672 48076 . + 0 ID=Phyra82870;Parent=Phyra82870;rank=1 scaffold_79 . exon 47672 48076 . + . ID=Phyra82870.1;Parent=Phyra82870;constitutive=1;rank=1 scaffold_79 . CDS 48265 48484 . + 0 ID=Phyra82870;Parent=Phyra82870;rank=2 scaffold_79 . CDS 48517 48929 . + 0 ID=Phyra82870;Parent=Phyra82870;rank=3 scaffold_79 . CDS 49050 49154 . + 0 ID=Phyra82870;Parent=Phyra82870;rank=4 scaffold_79 . CDS 49218 49548 . + 0 ID=Phyra82870;Parent=Phyra82870;rank=5 scaffold_79 . CDS 49675 50402 . + 0 ID=Phyra82870;Parent=Phyra82870;rank=6 scaffold_79 . biological_region 53755 53757 0.999 + . logic_name=eponine scaffold_79 . biological_region 54232 54233 0.999 + . logic_name=eponine scaffold_79 . repeat_region 56158 56173 . ? . description=dust scaffold_79 . repeat_region 56349 56356 . ? . description=dust scaffold_79 . repeat_region 56988 69231 . ? . description=dust scaffold_79 . exon 48265 48484 . + . ID=Phyra82870.2;Parent=Phyra82870;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_79 . exon 48517 48929 . + . ID=Phyra82870.3;Parent=Phyra82870;constitutive=1;ensembl_phase=1;rank=3 scaffold_79 . exon 49050 49154 . + . ID=Phyra82870.4;Parent=Phyra82870;constitutive=1;rank=4 scaffold_79 . exon 49218 49548 . + . ID=Phyra82870.5;Parent=Phyra82870;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_79 . exon 49675 50402 . + . ID=Phyra82870.6;Parent=Phyra82870;constitutive=1;ensembl_phase=1;rank=6 scaffold_79 ensembl protein_coding_gene 50808 52433 . + . ID=Phyra82871;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000015;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 50808 52433 . + . ID=Phyra82871;Parent=Phyra82871;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 50808 52433 . + 0 ID=Phyra82871;Parent=Phyra82871;rank=1 scaffold_79 . exon 50808 52433 . + . ID=Phyra82871.1;Parent=Phyra82871;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 52663 54460 . - . ID=Phyra82872;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000016;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 52663 54460 . - . ID=Phyra82872;Parent=Phyra82872;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 52663 53562 . - 0 ID=Phyra82872;Parent=Phyra82872;rank=3 scaffold_79 . exon 52663 53562 . - . ID=Phyra82872.3;Parent=Phyra82872;constitutive=1;rank=3 scaffold_79 . CDS 53687 54386 . - 0 ID=Phyra82872;Parent=Phyra82872;rank=2 scaffold_79 . exon 53687 54386 . - . ID=Phyra82872.2;Parent=Phyra82872;constitutive=1;ensembl_phase=2;rank=2 scaffold_79 . CDS 54435 54460 . - 0 ID=Phyra82872;Parent=Phyra82872;rank=1 scaffold_79 . exon 54435 54460 . - . ID=Phyra82872.1;Parent=Phyra82872;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_79 . repeat_region 56988 69231 . ? . description=dust scaffold_79 . biological_region 70061 70063 0.999 - . logic_name=eponine scaffold_79 . biological_region 70147 70148 0.999 + . logic_name=eponine scaffold_79 . biological_region 74168 74174 0.999 + . logic_name=eponine scaffold_79 . biological_region 74221 74227 0.999 + . logic_name=eponine scaffold_79 . biological_region 75820 75823 0.999 + . logic_name=eponine scaffold_79 . biological_region 75946 75947 0.999 + . logic_name=eponine scaffold_79 . biological_region 76069 76071 0.999 + . logic_name=eponine scaffold_79 ensembl protein_coding_gene 69582 70412 . - . ID=Phyra82873;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000017;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 69582 70412 . - . ID=Phyra82873;Parent=Phyra82873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 69582 70412 . - 0 ID=Phyra82873;Parent=Phyra82873;rank=1 scaffold_79 . exon 69582 70412 . - . ID=Phyra82873.1;Parent=Phyra82873;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 71316 72131 . + . ID=Phyra82874;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000018;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 71316 72131 . + . ID=Phyra82874;Parent=Phyra82874;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 71316 72131 . + 0 ID=Phyra82874;Parent=Phyra82874;rank=1 scaffold_79 . exon 71316 72131 . + . ID=Phyra82874.1;Parent=Phyra82874;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 73363 76893 . + . ID=Phyra96458;biotype=protein_coding;external_name=C_scaffold_79000002;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 73363 76893 . + . ID=Phyra96458;Parent=Phyra96458;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 73363 73500 . + 0 ID=Phyra96458;Parent=Phyra96458;rank=1 scaffold_79 . exon 73363 73500 . + . ID=Phyra96458.1;Parent=Phyra96458;constitutive=1;rank=1 scaffold_79 . CDS 73540 74047 . + 0 ID=Phyra96458;Parent=Phyra96458;rank=2 scaffold_79 . exon 73540 74047 . + . ID=Phyra96458.2;Parent=Phyra96458;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_79 . CDS 74572 74684 . + 0 ID=Phyra96458;Parent=Phyra96458;rank=3 scaffold_79 . exon 74572 74684 . + . ID=Phyra96458.3;Parent=Phyra96458;constitutive=1;ensembl_phase=1;rank=3 scaffold_79 . CDS 74876 75382 . + 0 ID=Phyra96458;Parent=Phyra96458;rank=4 scaffold_79 . exon 74876 75382 . + . ID=Phyra96458.4;Parent=Phyra96458;constitutive=1;rank=4 scaffold_79 . CDS 75818 75878 . + 0 ID=Phyra96458;Parent=Phyra96458;rank=5 scaffold_79 . exon 75818 75878 . + . ID=Phyra96458.5;Parent=Phyra96458;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_79 . CDS 76193 76629 . + 0 ID=Phyra96458;Parent=Phyra96458;rank=6 scaffold_79 . exon 76193 76629 . + . ID=Phyra96458.6;Parent=Phyra96458;constitutive=1;ensembl_phase=1;rank=6 scaffold_79 . CDS 76654 76893 . + 0 ID=Phyra96458;Parent=Phyra96458;rank=7 scaffold_79 . exon 76654 76893 . + . ID=Phyra96458.7;Parent=Phyra96458;constitutive=1;rank=7 scaffold_79 . repeat_region 78305 78333 . ? . description=trf scaffold_79 . repeat_region 78345 78375 . ? . description=trf scaffold_79 . repeat_region 78345 78381 . ? . description=trf scaffold_79 ensembl protein_coding_gene 77698 78441 . + . ID=Phyra82876;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000020;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 77698 78441 . + . ID=Phyra82876;Parent=Phyra82876;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 77698 78441 . + 0 ID=Phyra82876;Parent=Phyra82876;rank=1 scaffold_79 . exon 77698 78441 . + . ID=Phyra82876.1;Parent=Phyra82876;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 78797 80899 . + . ID=Phyra82877;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000021;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 78797 80899 . + . ID=Phyra82877;Parent=Phyra82877;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 78797 79617 . + 0 ID=Phyra82877;Parent=Phyra82877;rank=1 scaffold_79 . exon 78797 79617 . + . ID=Phyra82877.1;Parent=Phyra82877;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_79 . CDS 79972 80899 . + 0 ID=Phyra82877;Parent=Phyra82877;rank=2 scaffold_79 . exon 79972 80899 . + . ID=Phyra82877.2;Parent=Phyra82877;constitutive=1;ensembl_phase=2;rank=2 scaffold_79 ensembl protein_coding_gene 81326 82171 . + . ID=Phyra82878;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000022;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 81326 82171 . + . ID=Phyra82878;Parent=Phyra82878;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 81326 82171 . + 0 ID=Phyra82878;Parent=Phyra82878;rank=1 scaffold_79 . exon 81326 82171 . + . ID=Phyra82878.1;Parent=Phyra82878;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 83517 85834 . + . ID=Phyra96460;biotype=protein_coding;external_name=C_scaffold_79000004;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 83517 85834 . + . ID=Phyra96460;Parent=Phyra96460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 83517 83986 . + 0 ID=Phyra96460;Parent=Phyra96460;rank=1 scaffold_79 . exon 83517 83986 . + . ID=Phyra96460.1;Parent=Phyra96460;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_79 . CDS 84047 84785 . + 0 ID=Phyra96460;Parent=Phyra96460;rank=2 scaffold_79 . exon 84047 84785 . + . ID=Phyra96460.2;Parent=Phyra96460;constitutive=1;ensembl_phase=2;rank=2 scaffold_79 . CDS 85287 85732 . + 0 ID=Phyra96460;Parent=Phyra96460;rank=3 scaffold_79 . exon 85287 85732 . + . ID=Phyra96460.3;Parent=Phyra96460;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_79 . CDS 85795 85834 . + 0 ID=Phyra96460;Parent=Phyra96460;rank=4 scaffold_79 . exon 85795 85834 . + . ID=Phyra96460.4;Parent=Phyra96460;constitutive=1;ensembl_phase=2;rank=4 scaffold_79 . biological_region 89053 89054 0.999 + . logic_name=eponine scaffold_79 . repeat_region 89409 89416 . ? . description=dust scaffold_79 . repeat_region 90019 90026 . ? . description=dust scaffold_79 . repeat_region 91597 91615 . ? . description=dust scaffold_79 . biological_region 94931 94935 0.999 + . logic_name=eponine scaffold_79 ensembl pseudogenic_tRNA 93686 93758 . - . ID=EPrPRAG00000000069;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_79 ensembl transcript 93686 93758 . - . ID=EPrPRAT00000000069;Parent=EPrPRAG00000000069;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_79 ensembl pseudogenic_tRNA 93463 93539 . - . ID=EPrPRAG00000000204;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_79 ensembl transcript 93463 93539 . - . ID=EPrPRAT00000000204;Parent=EPrPRAG00000000204;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_79 . exon 93686 93758 . - . ID=EPrPRAE00000000069;Parent=EPrPRAT00000000069;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_79 . exon 93463 93539 . - . ID=EPrPRAE00000000204;Parent=EPrPRAT00000000204;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_79 ensembl protein_coding_gene 86837 87205 . - . ID=Phyra82880;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000024;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 86837 87205 . - . ID=Phyra82880;Parent=Phyra82880;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 86837 87205 . - 0 ID=Phyra82880;Parent=Phyra82880;rank=1 scaffold_79 . exon 86837 87205 . - . ID=Phyra82880.1;Parent=Phyra82880;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 91931 93355 . + . ID=Phyra82881;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000025;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 91931 93355 . + . ID=Phyra82881;Parent=Phyra82881;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 91931 92776 . + 0 ID=Phyra82881;Parent=Phyra82881;rank=1 scaffold_79 . exon 91931 92776 . + . ID=Phyra82881.1;Parent=Phyra82881;constitutive=1;rank=1 scaffold_79 . CDS 92882 93355 . + 0 ID=Phyra82881;Parent=Phyra82881;rank=2 scaffold_79 . exon 92882 93355 . + . ID=Phyra82881.2;Parent=Phyra82881;constitutive=1;rank=2 scaffold_79 ensembl protein_coding_gene 94780 97298 . + . ID=Phyra82882;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000026;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 94780 97298 . + . ID=Phyra82882;Parent=Phyra82882;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 94780 95415 . + 0 ID=Phyra82882;Parent=Phyra82882;rank=1 scaffold_79 . exon 94780 95415 . + . ID=Phyra82882.1;Parent=Phyra82882;constitutive=1;rank=1 scaffold_79 . CDS 95454 95532 . + 0 ID=Phyra82882;Parent=Phyra82882;rank=2 scaffold_79 . exon 95454 95532 . + . ID=Phyra82882.2;Parent=Phyra82882;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_79 . CDS 95665 95798 . + 0 ID=Phyra82882;Parent=Phyra82882;rank=3 scaffold_79 . exon 95665 95798 . + . ID=Phyra82882.3;Parent=Phyra82882;constitutive=1;ensembl_phase=1;rank=3 scaffold_79 . CDS 96039 96195 . + 0 ID=Phyra82882;Parent=Phyra82882;rank=4 scaffold_79 . CDS 96316 97298 . + 0 ID=Phyra82882;Parent=Phyra82882;rank=5 scaffold_79 . repeat_region 96259 98500 . + . description=GypsyPi-1c_I-int scaffold_79 . repeat_region 100323 100405 . + . description=GypsyPi-1c_LTR scaffold_79 . exon 96039 96195 . + . ID=Phyra82882.4;Parent=Phyra82882;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_79 . exon 96316 97298 . + . ID=Phyra82882.5;Parent=Phyra82882;constitutive=1;ensembl_phase=1;rank=5 scaffold_79 ensembl protein_coding_gene 98412 99818 . - . ID=Phyra82883;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000027;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 98412 99818 . - . ID=Phyra82883;Parent=Phyra82883;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 98412 98473 . - 0 ID=Phyra82883;Parent=Phyra82883;rank=4 scaffold_79 . exon 98412 98473 . - . ID=Phyra82883.4;Parent=Phyra82883;constitutive=1;ensembl_phase=1;rank=4 scaffold_79 . CDS 98655 98852 . - 0 ID=Phyra82883;Parent=Phyra82883;rank=3 scaffold_79 . exon 98655 98852 . - . ID=Phyra82883.3;Parent=Phyra82883;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_79 . CDS 98877 99578 . - 0 ID=Phyra82883;Parent=Phyra82883;rank=2 scaffold_79 . exon 98877 99578 . - . ID=Phyra82883.2;Parent=Phyra82883;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_79 . CDS 99620 99818 . - 0 ID=Phyra82883;Parent=Phyra82883;rank=1 scaffold_79 . exon 99620 99818 . - . ID=Phyra82883.1;Parent=Phyra82883;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_79 ensembl protein_coding_gene 102228 109192 . - . ID=Phyra96461;biotype=protein_coding;external_name=C_scaffold_79000005;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 102228 109192 . - . ID=Phyra96461;Parent=Phyra96461;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 102228 102404 . - 0 ID=Phyra96461;Parent=Phyra96461;rank=8 scaffold_79 . exon 102228 102404 . - . ID=Phyra96461.8;Parent=Phyra96461;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_79 . CDS 102534 102776 . - 0 ID=Phyra96461;Parent=Phyra96461;rank=7 scaffold_79 . exon 102534 102776 . - . ID=Phyra96461.7;Parent=Phyra96461;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_79 . CDS 103389 103710 . - 0 ID=Phyra96461;Parent=Phyra96461;rank=6 scaffold_79 . exon 103389 103710 . - . ID=Phyra96461.6;Parent=Phyra96461;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_79 . CDS 104165 105583 . - 0 ID=Phyra96461;Parent=Phyra96461;rank=5 scaffold_79 . exon 104165 105583 . - . ID=Phyra96461.5;Parent=Phyra96461;constitutive=1;rank=5 scaffold_79 . CDS 106091 107538 . - 0 ID=Phyra96461;Parent=Phyra96461;rank=4 scaffold_79 . CDS 108076 108125 . - 0 ID=Phyra96461;Parent=Phyra96461;rank=3 scaffold_79 . CDS 108174 108649 . - 0 ID=Phyra96461;Parent=Phyra96461;rank=2 scaffold_79 . CDS 108728 109192 . - 0 ID=Phyra96461;Parent=Phyra96461;rank=1 scaffold_79 . biological_region 108182 108182 0.999 + . logic_name=eponine scaffold_79 . biological_region 113254 113255 0.999 - . logic_name=eponine scaffold_79 . repeat_region 114099 114107 . ? . description=dust scaffold_79 . repeat_region 114129 114146 . ? . description=dust scaffold_79 . repeat_region 114327 114356 . ? . description=trf scaffold_79 . repeat_region 114327 114406 . ? . description=dust scaffold_79 ensembl protein_coding_gene 110600 113809 . - . ID=Phyra82886;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000030;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 110600 113809 . - . ID=Phyra82886;Parent=Phyra82886;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 110600 110611 . - 0 ID=Phyra82886;Parent=Phyra82886;rank=3 scaffold_79 . exon 110600 110611 . - . ID=Phyra82886.3;Parent=Phyra82886;constitutive=1;rank=3 scaffold_79 . CDS 110711 110778 . - 0 ID=Phyra82886;Parent=Phyra82886;rank=2 scaffold_79 . exon 110711 110778 . - . ID=Phyra82886.2;Parent=Phyra82886;constitutive=1;ensembl_phase=1;rank=2 scaffold_79 . CDS 110887 113809 . - 0 ID=Phyra82886;Parent=Phyra82886;rank=1 scaffold_79 . exon 110887 113809 . - . ID=Phyra82886.1;Parent=Phyra82886;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_79 . exon 106091 107538 . - . ID=Phyra96461.4;Parent=Phyra96461;constitutive=1;ensembl_phase=1;rank=4 scaffold_79 . exon 108076 108125 . - . ID=Phyra96461.3;Parent=Phyra96461;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_79 . exon 108174 108649 . - . ID=Phyra96461.2;Parent=Phyra96461;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_79 . exon 108728 109192 . - . ID=Phyra96461.1;Parent=Phyra96461;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 115413 117452 . - . ID=Phyra82887;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000031;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 115413 117452 . - . ID=Phyra82887;Parent=Phyra82887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 115413 117452 . - 0 ID=Phyra82887;Parent=Phyra82887;rank=1 scaffold_79 . exon 115413 117452 . - . ID=Phyra82887.1;Parent=Phyra82887;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 118083 119756 . - . ID=Phyra82888;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000032;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 118083 119756 . - . ID=Phyra82888;Parent=Phyra82888;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 118083 119756 . - 0 ID=Phyra82888;Parent=Phyra82888;rank=1 scaffold_79 . exon 118083 119756 . - . ID=Phyra82888.1;Parent=Phyra82888;constitutive=1;rank=1 scaffold_79 . biological_region 125543 125546 0.999 + . logic_name=eponine scaffold_79 . repeat_region 129473 129483 . ? . description=dust scaffold_79 ensembl protein_coding_gene 141038 141949 . + . ID=Phyra82889;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000033;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 141038 141949 . + . ID=Phyra82889;Parent=Phyra82889;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 141038 141949 . + 0 ID=Phyra82889;Parent=Phyra82889;rank=1 scaffold_79 . exon 141038 141949 . + . ID=Phyra82889.1;Parent=Phyra82889;constitutive=1;rank=1 scaffold_79 . repeat_region 148924 148957 . ? . description=trf scaffold_79 . repeat_region 149678 155896 . ? . description=dust scaffold_79 . biological_region 159939 159941 0.999 - . logic_name=eponine scaffold_79 . biological_region 160044 160046 0.999 - . logic_name=eponine scaffold_79 . biological_region 160961 160961 0.999 + . logic_name=eponine scaffold_79 ensembl protein_coding_gene 159811 160449 . + . ID=Phyra82890;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000034;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 159811 160449 . + . ID=Phyra82890;Parent=Phyra82890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 159811 160449 . + 0 ID=Phyra82890;Parent=Phyra82890;rank=1 scaffold_79 . exon 159811 160449 . + . ID=Phyra82890.1;Parent=Phyra82890;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 160680 162926 . + . ID=Phyra82891;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000035;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 160680 162926 . + . ID=Phyra82891;Parent=Phyra82891;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 160680 160796 . + 0 ID=Phyra82891;Parent=Phyra82891;rank=1 scaffold_79 . exon 160680 160796 . + . ID=Phyra82891.1;Parent=Phyra82891;constitutive=1;rank=1 scaffold_79 . CDS 160861 162707 . + 0 ID=Phyra82891;Parent=Phyra82891;rank=2 scaffold_79 . exon 160861 162707 . + . ID=Phyra82891.2;Parent=Phyra82891;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_79 . CDS 162905 162926 . + 0 ID=Phyra82891;Parent=Phyra82891;rank=3 scaffold_79 . exon 162905 162926 . + . ID=Phyra82891.3;Parent=Phyra82891;constitutive=1;ensembl_phase=2;rank=3 scaffold_79 . repeat_region 164450 164490 . ? . description=dust scaffold_79 . repeat_region 169464 169472 . ? . description=dust scaffold_79 . repeat_region 171317 171335 . ? . description=dust scaffold_79 . repeat_region 171996 172036 . ? . description=trf scaffold_79 ensembl protein_coding_gene 166305 168296 . + . ID=Phyra53169;biotype=protein_coding;external_name=gwEuk.79.29.1;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 166305 168296 . + . ID=Phyra53169;Parent=Phyra53169;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 166305 168031 . + 0 ID=Phyra53169;Parent=Phyra53169;rank=1 scaffold_79 . exon 166305 168031 . + . ID=Phyra53169.1;Parent=Phyra53169;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_79 . CDS 168092 168296 . + 0 ID=Phyra53169;Parent=Phyra53169;rank=2 scaffold_79 . exon 168092 168296 . + . ID=Phyra53169.2;Parent=Phyra53169;constitutive=1;ensembl_phase=2;rank=2 scaffold_79 ensembl protein_coding_gene 163376 165579 . - . ID=Phyra82892;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000036;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 163376 165579 . - . ID=Phyra82892;Parent=Phyra82892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 163376 164257 . - 0 ID=Phyra82892;Parent=Phyra82892;rank=5 scaffold_79 . exon 163376 164257 . - . ID=Phyra82892.5;Parent=Phyra82892;constitutive=1;rank=5 scaffold_79 . CDS 164343 164438 . - 0 ID=Phyra82892;Parent=Phyra82892;rank=4 scaffold_79 . exon 164343 164438 . - . ID=Phyra82892.4;Parent=Phyra82892;constitutive=1;rank=4 scaffold_79 . CDS 164505 164691 . - 0 ID=Phyra82892;Parent=Phyra82892;rank=3 scaffold_79 . exon 164505 164691 . - . ID=Phyra82892.3;Parent=Phyra82892;constitutive=1;ensembl_phase=2;rank=3 scaffold_79 . CDS 164919 165433 . - 0 ID=Phyra82892;Parent=Phyra82892;rank=2 scaffold_79 . exon 164919 165433 . - . ID=Phyra82892.2;Parent=Phyra82892;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_79 . CDS 165502 165579 . - 0 ID=Phyra82892;Parent=Phyra82892;rank=1 scaffold_79 . exon 165502 165579 . - . ID=Phyra82892.1;Parent=Phyra82892;constitutive=1;rank=1 scaffold_79 . biological_region 174551 174560 0.999 - . logic_name=eponine scaffold_79 . biological_region 174555 174557 0.999 + . logic_name=eponine scaffold_79 . biological_region 174579 174580 0.999 - . logic_name=eponine scaffold_79 . biological_region 175606 175607 0.999 - . logic_name=eponine scaffold_79 ensembl protein_coding_gene 173034 174666 . - . ID=Phyra82894;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000038;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 173034 174666 . - . ID=Phyra82894;Parent=Phyra82894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 173034 173105 . - 0 ID=Phyra82894;Parent=Phyra82894;rank=4 scaffold_79 . exon 173034 173105 . - . ID=Phyra82894.4;Parent=Phyra82894;constitutive=1;rank=4 scaffold_79 . CDS 173125 173189 . - 0 ID=Phyra82894;Parent=Phyra82894;rank=3 scaffold_79 . exon 173125 173189 . - . ID=Phyra82894.3;Parent=Phyra82894;constitutive=1;ensembl_phase=1;rank=3 scaffold_79 . CDS 173262 173367 . - 0 ID=Phyra82894;Parent=Phyra82894;rank=2 scaffold_79 . exon 173262 173367 . - . ID=Phyra82894.2;Parent=Phyra82894;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_79 . CDS 173452 174666 . - 0 ID=Phyra82894;Parent=Phyra82894;rank=1 scaffold_79 . exon 173452 174666 . - . ID=Phyra82894.1;Parent=Phyra82894;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 175571 177511 . + . ID=Phyra82895;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000039;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 175571 177511 . + . ID=Phyra82895;Parent=Phyra82895;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 175571 176035 . + 0 ID=Phyra82895;Parent=Phyra82895;rank=1 scaffold_79 . exon 175571 176035 . + . ID=Phyra82895.1;Parent=Phyra82895;constitutive=1;rank=1 scaffold_79 . CDS 176094 177461 . + 0 ID=Phyra82895;Parent=Phyra82895;rank=2 scaffold_79 . exon 176094 177461 . + . ID=Phyra82895.2;Parent=Phyra82895;constitutive=1;rank=2 scaffold_79 . CDS 177494 177511 . + 0 ID=Phyra82895;Parent=Phyra82895;rank=3 scaffold_79 . exon 177494 177511 . + . ID=Phyra82895.3;Parent=Phyra82895;constitutive=1;rank=3 scaffold_79 ensembl protein_coding_gene 180899 181982 . - . ID=Phyra82896;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000040;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 180899 181982 . - . ID=Phyra82896;Parent=Phyra82896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 180899 181279 . - 0 ID=Phyra82896;Parent=Phyra82896;rank=4 scaffold_79 . exon 180899 181279 . - . ID=Phyra82896.4;Parent=Phyra82896;constitutive=1;rank=4 scaffold_79 . CDS 181349 181388 . - 0 ID=Phyra82896;Parent=Phyra82896;rank=3 scaffold_79 . exon 181349 181388 . - . ID=Phyra82896.3;Parent=Phyra82896;constitutive=1;ensembl_phase=2;rank=3 scaffold_79 . CDS 181556 181812 . - 0 ID=Phyra82896;Parent=Phyra82896;rank=2 scaffold_79 . exon 181556 181812 . - . ID=Phyra82896.2;Parent=Phyra82896;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_79 . CDS 181953 181982 . - 0 ID=Phyra82896;Parent=Phyra82896;rank=1 scaffold_79 . exon 181953 181982 . - . ID=Phyra82896.1;Parent=Phyra82896;constitutive=1;rank=1 scaffold_79 . repeat_region 186971 201499 . ? . description=dust scaffold_79 . repeat_region 186971 201499 . ? . description=dust scaffold_79 . biological_region 203894 203900 0.999 + . logic_name=eponine scaffold_79 . repeat_region 207274 207285 . ? . description=dust scaffold_79 ensembl protein_coding_gene 210751 214985 . + . ID=Phyra82897;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000041;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 210751 214985 . + . ID=Phyra82897;Parent=Phyra82897;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 210751 211345 . + 0 ID=Phyra82897;Parent=Phyra82897;rank=1 scaffold_79 . exon 210751 211345 . + . ID=Phyra82897.1;Parent=Phyra82897;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_79 . CDS 211547 211778 . + 0 ID=Phyra82897;Parent=Phyra82897;rank=2 scaffold_79 . CDS 211963 212072 . + 0 ID=Phyra82897;Parent=Phyra82897;rank=3 scaffold_79 . CDS 212445 214124 . + 0 ID=Phyra82897;Parent=Phyra82897;rank=4 scaffold_79 . CDS 214344 214484 . + 0 ID=Phyra82897;Parent=Phyra82897;rank=5 scaffold_79 . CDS 214567 214985 . + 0 ID=Phyra82897;Parent=Phyra82897;rank=6 scaffold_79 ensembl protein_coding_gene 215122 215463 . + . ID=Phyra72060;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_79000003;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 215122 215463 . + . ID=Phyra72060;Parent=Phyra72060;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 215122 215463 . + 0 ID=Phyra72060;Parent=Phyra72060;rank=1 scaffold_79 . exon 215122 215463 . + . ID=Phyra72060.1;Parent=Phyra72060;constitutive=1;rank=1 scaffold_79 . exon 211547 211778 . + . ID=Phyra82897.2;Parent=Phyra82897;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_79 . exon 211963 212072 . + . ID=Phyra82897.3;Parent=Phyra82897;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_79 . exon 212445 214124 . + . ID=Phyra82897.4;Parent=Phyra82897;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_79 . exon 214344 214484 . + . ID=Phyra82897.5;Parent=Phyra82897;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_79 . exon 214567 214985 . + . ID=Phyra82897.6;Parent=Phyra82897;constitutive=1;ensembl_phase=1;rank=6 scaffold_79 ensembl protein_coding_gene 215794 218294 . + . ID=Phyra82899;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000043;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 215794 218294 . + . ID=Phyra82899;Parent=Phyra82899;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 215794 216897 . + 0 ID=Phyra82899;Parent=Phyra82899;rank=1 scaffold_79 . exon 215794 216897 . + . ID=Phyra82899.1;Parent=Phyra82899;constitutive=1;rank=1 scaffold_79 . CDS 216933 218294 . + 0 ID=Phyra82899;Parent=Phyra82899;rank=2 scaffold_79 . exon 216933 218294 . + . ID=Phyra82899.2;Parent=Phyra82899;constitutive=1;rank=2 scaffold_79 ensembl protein_coding_gene 218576 219922 . - . ID=Phyra82900;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_79000044;logic_name=jgi_phyra1 scaffold_79 ensembl transcript 218576 219922 . - . ID=Phyra82900;Parent=Phyra82900;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_79 . CDS 218576 219922 . - 0 ID=Phyra82900;Parent=Phyra82900;rank=1 scaffold_79 . exon 218576 219922 . - . ID=Phyra82900.1;Parent=Phyra82900;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_77 1 226713 scaffold_77 . biological_region 498 500 0.999 - . logic_name=eponine scaffold_77 . biological_region 659 661 0.999 + . logic_name=eponine scaffold_77 . biological_region 1100 1100 0.999 + . logic_name=eponine scaffold_77 . repeat_region 1270 1319 . ? . description=dust scaffold_77 . repeat_region 1706 1748 . ? . description=trf scaffold_77 . repeat_region 2115 2335 . + . description=GypsyPi-1c_I-int scaffold_77 . repeat_region 2786 2805 . ? . description=trf scaffold_77 . repeat_region 3357 3406 . ? . description=dust scaffold_77 . repeat_region 4322 4371 . ? . description=dust scaffold_77 . repeat_region 4716 5002 . - . description=GypsyPi-1c_I-int scaffold_77 . repeat_region 5130 5179 . ? . description=dust scaffold_77 . repeat_region 5304 5321 . ? . description=dust scaffold_77 . biological_region 7527 7529 0.999 + . logic_name=eponine scaffold_77 . biological_region 7707 7710 0.999 + . logic_name=eponine scaffold_77 . biological_region 7817 7817 0.999 + . logic_name=eponine scaffold_77 . biological_region 8212 8214 0.999 - . logic_name=eponine scaffold_77 ensembl protein_coding_gene 26 1473 . - . ID=Phyra82751;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000001;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 26 1473 . - . ID=Phyra82751;Parent=Phyra82751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 26 1235 . - 0 ID=Phyra82751;Parent=Phyra82751;rank=2 scaffold_77 . exon 26 1235 . - . ID=Phyra82751.2;Parent=Phyra82751;constitutive=1;ensembl_phase=2;rank=2 scaffold_77 . CDS 1340 1473 . - 0 ID=Phyra82751;Parent=Phyra82751;rank=1 scaffold_77 . exon 1340 1473 . - . ID=Phyra82751.1;Parent=Phyra82751;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_77 ensembl protein_coding_gene 2353 3233 . - . ID=Phyra82752;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000002;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 2353 3233 . - . ID=Phyra82752;Parent=Phyra82752;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 2353 2990 . - 0 ID=Phyra82752;Parent=Phyra82752;rank=3 scaffold_77 . exon 2353 2990 . - . ID=Phyra82752.3;Parent=Phyra82752;constitutive=1;ensembl_phase=1;rank=3 scaffold_77 . CDS 3070 3136 . - 0 ID=Phyra82752;Parent=Phyra82752;rank=2 scaffold_77 . exon 3070 3136 . - . ID=Phyra82752.2;Parent=Phyra82752;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_77 . CDS 3231 3233 . - 0 ID=Phyra82752;Parent=Phyra82752;rank=1 scaffold_77 . exon 3231 3233 . - . ID=Phyra82752.1;Parent=Phyra82752;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 6866 13006 . + . ID=Phyra96429;biotype=protein_coding;external_name=C_scaffold_77000001;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 6866 13006 . + . ID=Phyra96429;Parent=Phyra96429;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 6866 7063 . + 0 ID=Phyra96429;Parent=Phyra96429;rank=1 scaffold_77 . exon 6866 7063 . + . ID=Phyra96429.1;Parent=Phyra96429;constitutive=1;rank=1 scaffold_77 . CDS 7139 7219 . + 0 ID=Phyra96429;Parent=Phyra96429;rank=2 scaffold_77 . exon 7139 7219 . + . ID=Phyra96429.2;Parent=Phyra96429;constitutive=1;rank=2 scaffold_77 . CDS 7284 8001 . + 0 ID=Phyra96429;Parent=Phyra96429;rank=3 scaffold_77 . exon 7284 8001 . + . ID=Phyra96429.3;Parent=Phyra96429;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_77 . CDS 8110 8277 . + 0 ID=Phyra96429;Parent=Phyra96429;rank=4 scaffold_77 . exon 8110 8277 . + . ID=Phyra96429.4;Parent=Phyra96429;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_77 . CDS 8344 8745 . + 0 ID=Phyra96429;Parent=Phyra96429;rank=5 scaffold_77 . exon 8344 8745 . + . ID=Phyra96429.5;Parent=Phyra96429;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_77 . CDS 8791 9458 . + 0 ID=Phyra96429;Parent=Phyra96429;rank=6 scaffold_77 . exon 8791 9458 . + . ID=Phyra96429.6;Parent=Phyra96429;constitutive=1;ensembl_phase=1;rank=6 scaffold_77 . CDS 9534 10964 . + 0 ID=Phyra96429;Parent=Phyra96429;rank=7 scaffold_77 . exon 9534 10964 . + . ID=Phyra96429.7;Parent=Phyra96429;constitutive=1;rank=7 scaffold_77 . CDS 11001 11433 . + 0 ID=Phyra96429;Parent=Phyra96429;rank=8 scaffold_77 . CDS 11539 12017 . + 0 ID=Phyra96429;Parent=Phyra96429;rank=9 scaffold_77 . CDS 12086 12226 . + 0 ID=Phyra96429;Parent=Phyra96429;rank=10 scaffold_77 . CDS 12480 13006 . + 0 ID=Phyra96429;Parent=Phyra96429;rank=11 scaffold_77 ensembl protein_coding_gene 18846 20663 . - . ID=Phyra72046;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_77000002;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 18846 20663 . - . ID=Phyra72046;Parent=Phyra72046;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 18846 18985 . - 0 ID=Phyra72046;Parent=Phyra72046;rank=3 scaffold_77 . exon 18846 18985 . - . ID=Phyra72046.3;Parent=Phyra72046;constitutive=1;ensembl_phase=1;rank=3 scaffold_77 . CDS 19045 20526 . - 0 ID=Phyra72046;Parent=Phyra72046;rank=2 scaffold_77 . exon 19045 20526 . - . ID=Phyra72046.2;Parent=Phyra72046;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_77 . CDS 20633 20663 . - 0 ID=Phyra72046;Parent=Phyra72046;rank=1 scaffold_77 ensembl protein_coding_gene 13263 15077 . - . ID=Phyra82755;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000005;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 13263 15077 . - . ID=Phyra82755;Parent=Phyra82755;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 13263 15077 . - 0 ID=Phyra82755;Parent=Phyra82755;rank=1 scaffold_77 . exon 13263 15077 . - . ID=Phyra82755.1;Parent=Phyra82755;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 16028 17818 . + . ID=Phyra82756;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000006;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 16028 17818 . + . ID=Phyra82756;Parent=Phyra82756;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 16028 17818 . + 0 ID=Phyra82756;Parent=Phyra82756;rank=1 scaffold_77 . exon 16028 17818 . + . ID=Phyra82756.1;Parent=Phyra82756;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 17930 18652 . - . ID=Phyra82757;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000007;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 17930 18652 . - . ID=Phyra82757;Parent=Phyra82757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 17930 18385 . - 0 ID=Phyra82757;Parent=Phyra82757;rank=2 scaffold_77 . exon 17930 18385 . - . ID=Phyra82757.2;Parent=Phyra82757;constitutive=1;rank=2 scaffold_77 . CDS 18443 18652 . - 0 ID=Phyra82757;Parent=Phyra82757;rank=1 scaffold_77 . exon 18443 18652 . - . ID=Phyra82757.1;Parent=Phyra82757;constitutive=1;rank=1 scaffold_77 . exon 11001 11433 . + . ID=Phyra96429.8;Parent=Phyra96429;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_77 . exon 11539 12017 . + . ID=Phyra96429.9;Parent=Phyra96429;constitutive=1;ensembl_phase=1;rank=9 scaffold_77 . exon 12086 12226 . + . ID=Phyra96429.10;Parent=Phyra96429;constitutive=1;rank=10 scaffold_77 . exon 12480 13006 . + . ID=Phyra96429.11;Parent=Phyra96429;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_77 . biological_region 20979 20982 0.999 + . logic_name=eponine scaffold_77 . biological_region 21500 21503 0.999 - . logic_name=eponine scaffold_77 . repeat_region 23030 23698 . ? . description=dust scaffold_77 . biological_region 25962 25965 0.999 - . logic_name=eponine scaffold_77 . biological_region 27876 27881 0.999 - . logic_name=eponine scaffold_77 . biological_region 29504 29507 0.999 - . logic_name=eponine scaffold_77 . exon 20633 20663 . - . ID=Phyra72046.1;Parent=Phyra72046;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_77 ensembl protein_coding_gene 20904 22571 . - . ID=Phyra82759;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000009;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 20904 22571 . - . ID=Phyra82759;Parent=Phyra82759;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 20904 22571 . - 0 ID=Phyra82759;Parent=Phyra82759;rank=1 scaffold_77 . exon 20904 22571 . - . ID=Phyra82759.1;Parent=Phyra82759;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 24540 26216 . + . ID=Phyra82760;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000010;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 24540 26216 . + . ID=Phyra82760;Parent=Phyra82760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 24540 26216 . + 0 ID=Phyra82760;Parent=Phyra82760;rank=1 scaffold_77 . exon 24540 26216 . + . ID=Phyra82760.1;Parent=Phyra82760;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 26642 28321 . + . ID=Phyra82761;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000011;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 26642 28321 . + . ID=Phyra82761;Parent=Phyra82761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 26642 28321 . + 0 ID=Phyra82761;Parent=Phyra82761;rank=1 scaffold_77 . exon 26642 28321 . + . ID=Phyra82761.1;Parent=Phyra82761;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 29616 32606 . + . ID=Phyra82762;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000012;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 29616 32606 . + . ID=Phyra82762;Parent=Phyra82762;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 29616 32606 . + 0 ID=Phyra82762;Parent=Phyra82762;rank=1 scaffold_77 . exon 29616 32606 . + . ID=Phyra82762.1;Parent=Phyra82762;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 33846 35663 . + . ID=Phyra82763;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000013;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 33846 35663 . + . ID=Phyra82763;Parent=Phyra82763;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 33846 35663 . + 0 ID=Phyra82763;Parent=Phyra82763;rank=1 scaffold_77 . exon 33846 35663 . + . ID=Phyra82763.1;Parent=Phyra82763;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 36277 38022 . + . ID=Phyra82764;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000014;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 36277 38022 . + . ID=Phyra82764;Parent=Phyra82764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 36277 38022 . + 0 ID=Phyra82764;Parent=Phyra82764;rank=1 scaffold_77 . exon 36277 38022 . + . ID=Phyra82764.1;Parent=Phyra82764;constitutive=1;rank=1 scaffold_77 . repeat_region 39460 39880 . ? . description=trf scaffold_77 . biological_region 40871 40877 0.999 - . logic_name=eponine scaffold_77 . biological_region 40895 40895 0.999 + . logic_name=eponine scaffold_77 . biological_region 40928 40933 0.999 + . logic_name=eponine scaffold_77 . biological_region 41009 41010 0.999 + . logic_name=eponine scaffold_77 . biological_region 41036 41040 0.999 - . logic_name=eponine scaffold_77 . biological_region 41086 41093 0.999 - . logic_name=eponine scaffold_77 . repeat_region 48169 48176 . ? . description=dust scaffold_77 ensembl protein_coding_gene 40511 42127 . + . ID=Phyra82765;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000015;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 40511 42127 . + . ID=Phyra82765;Parent=Phyra82765;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 40511 42127 . + 0 ID=Phyra82765;Parent=Phyra82765;rank=1 scaffold_77 . exon 40511 42127 . + . ID=Phyra82765.1;Parent=Phyra82765;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 42343 45774 . + . ID=Phyra82766;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000016;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 42343 45774 . + . ID=Phyra82766;Parent=Phyra82766;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 42343 45774 . + 0 ID=Phyra82766;Parent=Phyra82766;rank=1 scaffold_77 . exon 42343 45774 . + . ID=Phyra82766.1;Parent=Phyra82766;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 45952 47427 . - . ID=Phyra82767;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000017;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 45952 47427 . - . ID=Phyra82767;Parent=Phyra82767;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 45952 47427 . - 0 ID=Phyra82767;Parent=Phyra82767;rank=1 scaffold_77 . exon 45952 47427 . - . ID=Phyra82767.1;Parent=Phyra82767;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 49587 51989 . + . ID=Phyra82768;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000018;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 49587 51989 . + . ID=Phyra82768;Parent=Phyra82768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 49587 51989 . + 0 ID=Phyra82768;Parent=Phyra82768;rank=1 scaffold_77 . exon 49587 51989 . + . ID=Phyra82768.1;Parent=Phyra82768;constitutive=1;rank=1 scaffold_77 . biological_region 59317 59319 0.999 - . logic_name=eponine scaffold_77 . biological_region 59355 59356 0.999 - . logic_name=eponine scaffold_77 . biological_region 61808 61811 0.999 + . logic_name=eponine scaffold_77 . repeat_region 62016 62048 . ? . description=trf scaffold_77 . biological_region 64923 64923 0.999 + . logic_name=eponine scaffold_77 . biological_region 66340 66342 0.999 + . logic_name=eponine scaffold_77 . biological_region 66586 66587 0.999 + . logic_name=eponine scaffold_77 . biological_region 66697 66702 0.999 - . logic_name=eponine scaffold_77 . biological_region 67369 67375 0.999 + . logic_name=eponine scaffold_77 ensembl protein_coding_gene 59234 60247 . - . ID=Phyra53031;biotype=protein_coding;external_name=gwEuk.77.14.1;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 59234 60247 . - . ID=Phyra53031;Parent=Phyra53031;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 59234 59589 . - 0 ID=Phyra53031;Parent=Phyra53031;rank=5 scaffold_77 . exon 59234 59589 . - . ID=Phyra53031.5;Parent=Phyra53031;constitutive=1;ensembl_phase=1;rank=5 scaffold_77 . CDS 59651 59766 . - 0 ID=Phyra53031;Parent=Phyra53031;rank=4 scaffold_77 . exon 59651 59766 . - . ID=Phyra53031.4;Parent=Phyra53031;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_77 . CDS 59838 59912 . - 0 ID=Phyra53031;Parent=Phyra53031;rank=3 scaffold_77 . exon 59838 59912 . - . ID=Phyra53031.3;Parent=Phyra53031;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_77 . CDS 59983 60137 . - 0 ID=Phyra53031;Parent=Phyra53031;rank=2 scaffold_77 . exon 59983 60137 . - . ID=Phyra53031.2;Parent=Phyra53031;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_77 . CDS 60203 60247 . - 0 ID=Phyra53031;Parent=Phyra53031;rank=1 scaffold_77 . exon 60203 60247 . - . ID=Phyra53031.1;Parent=Phyra53031;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 62396 64268 . + . ID=Phyra53033;biotype=protein_coding;external_name=gwEuk.77.16.1;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 62396 64268 . + . ID=Phyra53033;Parent=Phyra53033;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 62396 64132 . + 0 ID=Phyra53033;Parent=Phyra53033;rank=1 scaffold_77 . exon 62396 64132 . + . ID=Phyra53033.1;Parent=Phyra53033;constitutive=1;rank=1 scaffold_77 . CDS 64206 64268 . + 0 ID=Phyra53033;Parent=Phyra53033;rank=2 scaffold_77 . exon 64206 64268 . + . ID=Phyra53033.2;Parent=Phyra53033;constitutive=1;rank=2 scaffold_77 ensembl protein_coding_gene 68334 74374 . + . ID=Phyra82774;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000024;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 68334 74374 . + . ID=Phyra82774;Parent=Phyra82774;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 68334 68421 . + 0 ID=Phyra82774;Parent=Phyra82774;rank=1 scaffold_77 . exon 68334 68421 . + . ID=Phyra82774.1;Parent=Phyra82774;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_77 . CDS 68477 70088 . + 0 ID=Phyra82774;Parent=Phyra82774;rank=2 scaffold_77 . exon 68477 70088 . + . ID=Phyra82774.2;Parent=Phyra82774;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_77 . CDS 70165 73072 . + 0 ID=Phyra82774;Parent=Phyra82774;rank=3 scaffold_77 . CDS 73199 74374 . + 0 ID=Phyra82774;Parent=Phyra82774;rank=4 scaffold_77 ensembl protein_coding_gene 64796 66671 . - . ID=Phyra96430;biotype=protein_coding;external_name=C_scaffold_77000002;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 64796 66671 . - . ID=Phyra96430;Parent=Phyra96430;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 64796 64851 . - 0 ID=Phyra96430;Parent=Phyra96430;rank=4 scaffold_77 . exon 64796 64851 . - . ID=Phyra96430.4;Parent=Phyra96430;constitutive=1;ensembl_phase=1;rank=4 scaffold_77 . CDS 64883 66056 . - 0 ID=Phyra96430;Parent=Phyra96430;rank=3 scaffold_77 . exon 64883 66056 . - . ID=Phyra96430.3;Parent=Phyra96430;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_77 . CDS 66139 66534 . - 0 ID=Phyra96430;Parent=Phyra96430;rank=2 scaffold_77 . exon 66139 66534 . - . ID=Phyra96430.2;Parent=Phyra96430;constitutive=1;rank=2 scaffold_77 . CDS 66603 66671 . - 0 ID=Phyra96430;Parent=Phyra96430;rank=1 scaffold_77 . exon 66603 66671 . - . ID=Phyra96430.1;Parent=Phyra96430;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 67215 68157 . - . ID=Phyra96432;biotype=protein_coding;external_name=C_scaffold_77000004;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 67215 68157 . - . ID=Phyra96432;Parent=Phyra96432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 67215 67543 . - 0 ID=Phyra96432;Parent=Phyra96432;rank=2 scaffold_77 . exon 67215 67543 . - . ID=Phyra96432.2;Parent=Phyra96432;constitutive=1;ensembl_phase=1;rank=2 scaffold_77 . CDS 67620 68157 . - 0 ID=Phyra96432;Parent=Phyra96432;rank=1 scaffold_77 . exon 67620 68157 . - . ID=Phyra96432.1;Parent=Phyra96432;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_77 . exon 70165 73072 . + . ID=Phyra82774.3;Parent=Phyra82774;constitutive=1;ensembl_phase=2;rank=3 scaffold_77 . exon 73199 74374 . + . ID=Phyra82774.4;Parent=Phyra82774;constitutive=1;rank=4 scaffold_77 ensembl protein_coding_gene 78331 79815 . + . ID=Phyra82776;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000026;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 78331 79815 . + . ID=Phyra82776;Parent=Phyra82776;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 78331 79815 . + 0 ID=Phyra82776;Parent=Phyra82776;rank=1 scaffold_77 . exon 78331 79815 . + . ID=Phyra82776.1;Parent=Phyra82776;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 75413 77019 . - . ID=Phyra96435;biotype=protein_coding;external_name=C_scaffold_77000007;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 75413 77019 . - . ID=Phyra96435;Parent=Phyra96435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 75413 75416 . - 0 ID=Phyra96435;Parent=Phyra96435;rank=5 scaffold_77 . exon 75413 75416 . - . ID=Phyra96435.5;Parent=Phyra96435;constitutive=1;ensembl_phase=2;rank=5 scaffold_77 . CDS 75468 75590 . - 0 ID=Phyra96435;Parent=Phyra96435;rank=4 scaffold_77 . exon 75468 75590 . - . ID=Phyra96435.4;Parent=Phyra96435;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_77 . CDS 75612 76650 . - 0 ID=Phyra96435;Parent=Phyra96435;rank=3 scaffold_77 . exon 75612 76650 . - . ID=Phyra96435.3;Parent=Phyra96435;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_77 . CDS 76712 76915 . - 0 ID=Phyra96435;Parent=Phyra96435;rank=2 scaffold_77 . exon 76712 76915 . - . ID=Phyra96435.2;Parent=Phyra96435;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_77 . CDS 76980 77019 . - 0 ID=Phyra96435;Parent=Phyra96435;rank=1 scaffold_77 . exon 76980 77019 . - . ID=Phyra96435.1;Parent=Phyra96435;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_77 . biological_region 79388 79398 0.999 + . logic_name=eponine scaffold_77 . repeat_region 81879 81905 . ? . description=trf scaffold_77 . biological_region 83608 83613 0.999 + . logic_name=eponine scaffold_77 . repeat_region 83629 83650 . ? . description=trf scaffold_77 . biological_region 83652 83656 0.999 + . logic_name=eponine scaffold_77 . biological_region 83694 83701 0.999 + . logic_name=eponine scaffold_77 . biological_region 83708 83711 0.999 - . logic_name=eponine scaffold_77 . biological_region 83801 83803 0.999 - . logic_name=eponine scaffold_77 . biological_region 88264 88265 0.999 - . logic_name=eponine scaffold_77 . biological_region 88707 88711 0.999 + . logic_name=eponine scaffold_77 ensembl protein_coding_gene 82128 83396 . + . ID=Phyra72048;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_77000004;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 82128 83396 . + . ID=Phyra72048;Parent=Phyra72048;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 82128 83396 . + 0 ID=Phyra72048;Parent=Phyra72048;rank=1 scaffold_77 . exon 82128 83396 . + . ID=Phyra72048.1;Parent=Phyra72048;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 80045 81571 . + . ID=Phyra82777;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000027;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 80045 81571 . + . ID=Phyra82777;Parent=Phyra82777;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 80045 81571 . + 0 ID=Phyra82777;Parent=Phyra82777;rank=1 scaffold_77 . exon 80045 81571 . + . ID=Phyra82777.1;Parent=Phyra82777;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 83649 89182 . + . ID=Phyra82779;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000029;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 83649 89182 . + . ID=Phyra82779;Parent=Phyra82779;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . exon 83649 89182 . + . ID=Phyra82779.1;Parent=Phyra82779;constitutive=1;ensembl_phase=-1;rank=1 scaffold_77 . CDS 83651 89182 . + 0 ID=Phyra82779;Parent=Phyra82779;rank=1 scaffold_77 . repeat_region 89526 89534 . ? . description=dust scaffold_77 . repeat_region 91058 91069 . ? . description=dust scaffold_77 ensembl protein_coding_gene 94167 95208 . + . ID=Phyra72049;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_77000005;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 94167 95208 . + . ID=Phyra72049;Parent=Phyra72049;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 94167 95167 . + 0 ID=Phyra72049;Parent=Phyra72049;rank=1 scaffold_77 . exon 94167 95167 . + . ID=Phyra72049.1;Parent=Phyra72049;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_77 . CDS 95190 95208 . + 0 ID=Phyra72049;Parent=Phyra72049;rank=2 scaffold_77 . exon 95190 95208 . + . ID=Phyra72049.2;Parent=Phyra72049;constitutive=1;ensembl_phase=2;rank=2 scaffold_77 ensembl protein_coding_gene 89760 90158 . - . ID=Phyra82780;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000030;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 89760 90158 . - . ID=Phyra82780;Parent=Phyra82780;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 89760 90158 . - 0 ID=Phyra82780;Parent=Phyra82780;rank=1 scaffold_77 . exon 89760 90158 . - . ID=Phyra82780.1;Parent=Phyra82780;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 92401 93131 . - . ID=Phyra82781;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000031;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 92401 93131 . - . ID=Phyra82781;Parent=Phyra82781;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 92401 92481 . - 0 ID=Phyra82781;Parent=Phyra82781;rank=3 scaffold_77 . exon 92401 92481 . - . ID=Phyra82781.3;Parent=Phyra82781;constitutive=1;rank=3 scaffold_77 . CDS 92545 92685 . - 0 ID=Phyra82781;Parent=Phyra82781;rank=2 scaffold_77 . exon 92545 92685 . - . ID=Phyra82781.2;Parent=Phyra82781;constitutive=1;rank=2 scaffold_77 . CDS 92769 93131 . - 0 ID=Phyra82781;Parent=Phyra82781;rank=1 scaffold_77 . exon 92769 93131 . - . ID=Phyra82781.1;Parent=Phyra82781;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 95893 96957 . - . ID=Phyra82783;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000033;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 95893 96957 . - . ID=Phyra82783;Parent=Phyra82783;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 95893 96957 . - 0 ID=Phyra82783;Parent=Phyra82783;rank=1 scaffold_77 . exon 95893 96957 . - . ID=Phyra82783.1;Parent=Phyra82783;constitutive=1;rank=1 scaffold_77 . biological_region 103288 103288 0.999 - . logic_name=eponine scaffold_77 . biological_region 103561 103564 0.999 - . logic_name=eponine scaffold_77 . biological_region 103641 103647 0.999 - . logic_name=eponine scaffold_77 ensembl protein_coding_gene 98885 99946 . - . ID=Phyra72050;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_77000006;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 98885 99946 . - . ID=Phyra72050;Parent=Phyra72050;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 98885 99946 . - 0 ID=Phyra72050;Parent=Phyra72050;rank=1 scaffold_77 . exon 98885 99946 . - . ID=Phyra72050.1;Parent=Phyra72050;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 100378 101466 . + . ID=Phyra72051;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_77000007;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 100378 101466 . + . ID=Phyra72051;Parent=Phyra72051;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 100378 101466 . + 0 ID=Phyra72051;Parent=Phyra72051;rank=1 scaffold_77 . exon 100378 101466 . + . ID=Phyra72051.1;Parent=Phyra72051;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 103824 105764 . + . ID=Phyra72052;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_77000008;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 103824 105764 . + . ID=Phyra72052;Parent=Phyra72052;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 103824 105623 . + 0 ID=Phyra72052;Parent=Phyra72052;rank=1 scaffold_77 . exon 103824 105623 . + . ID=Phyra72052.1;Parent=Phyra72052;constitutive=1;rank=1 scaffold_77 . CDS 105699 105764 . + 0 ID=Phyra72052;Parent=Phyra72052;rank=2 scaffold_77 . exon 105699 105764 . + . ID=Phyra72052.2;Parent=Phyra72052;constitutive=1;rank=2 scaffold_77 ensembl protein_coding_gene 102288 103247 . - . ID=Phyra82786;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000036;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 102288 103247 . - . ID=Phyra82786;Parent=Phyra82786;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 102288 103247 . - 0 ID=Phyra82786;Parent=Phyra82786;rank=1 scaffold_77 . exon 102288 103247 . - . ID=Phyra82786.1;Parent=Phyra82786;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 105923 106309 . - . ID=Phyra82788;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000038;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 105923 106309 . - . ID=Phyra82788;Parent=Phyra82788;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 105923 106309 . - 0 ID=Phyra82788;Parent=Phyra82788;rank=1 scaffold_77 . exon 105923 106309 . - . ID=Phyra82788.1;Parent=Phyra82788;constitutive=1;rank=1 scaffold_77 . repeat_region 111308 111316 . ? . description=dust scaffold_77 . repeat_region 112553 112602 . ? . description=dust scaffold_77 . repeat_region 116630 116643 . ? . description=dust scaffold_77 ensembl protein_coding_gene 108903 110132 . + . ID=Phyra82789;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000039;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 108903 110132 . + . ID=Phyra82789;Parent=Phyra82789;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 108903 110132 . + 0 ID=Phyra82789;Parent=Phyra82789;rank=1 scaffold_77 . exon 108903 110132 . + . ID=Phyra82789.1;Parent=Phyra82789;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 113984 115723 . - . ID=Phyra96439;biotype=protein_coding;external_name=C_scaffold_77000011;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 113984 115723 . - . ID=Phyra96439;Parent=Phyra96439;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 113984 114213 . - 0 ID=Phyra96439;Parent=Phyra96439;rank=3 scaffold_77 . exon 113984 114213 . - . ID=Phyra96439.3;Parent=Phyra96439;constitutive=1;ensembl_phase=1;rank=3 scaffold_77 . CDS 114358 115450 . - 0 ID=Phyra96439;Parent=Phyra96439;rank=2 scaffold_77 . exon 114358 115450 . - . ID=Phyra96439.2;Parent=Phyra96439;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_77 . CDS 115493 115723 . - 0 ID=Phyra96439;Parent=Phyra96439;rank=1 scaffold_77 . exon 115493 115723 . - . ID=Phyra96439.1;Parent=Phyra96439;constitutive=1;rank=1 scaffold_77 . biological_region 121023 121024 0.999 - . logic_name=eponine scaffold_77 . biological_region 122008 122009 0.999 + . logic_name=eponine scaffold_77 ensembl protein_coding_gene 121915 122367 . - . ID=Phyra53078;biotype=protein_coding;external_name=gwEuk.77.61.1;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 121915 122367 . - . ID=Phyra53078;Parent=Phyra53078;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 121915 122367 . - 0 ID=Phyra53078;Parent=Phyra53078;rank=1 scaffold_77 . exon 121915 122367 . - . ID=Phyra53078.1;Parent=Phyra53078;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 118544 119755 . + . ID=Phyra82791;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000041;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 118544 119755 . + . ID=Phyra82791;Parent=Phyra82791;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 118544 119755 . + 0 ID=Phyra82791;Parent=Phyra82791;rank=1 scaffold_77 . exon 118544 119755 . + . ID=Phyra82791.1;Parent=Phyra82791;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 121040 121690 . + . ID=Phyra82792;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000042;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 121040 121690 . + . ID=Phyra82792;Parent=Phyra82792;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 121040 121690 . + 0 ID=Phyra82792;Parent=Phyra82792;rank=1 scaffold_77 . exon 121040 121690 . + . ID=Phyra82792.1;Parent=Phyra82792;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 123525 124238 . - . ID=Phyra82793;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000043;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 123525 124238 . - . ID=Phyra82793;Parent=Phyra82793;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 123525 124238 . - 0 ID=Phyra82793;Parent=Phyra82793;rank=1 scaffold_77 . exon 123525 124238 . - . ID=Phyra82793.1;Parent=Phyra82793;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 127094 127795 . - . ID=Phyra82794;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000044;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 127094 127795 . - . ID=Phyra82794;Parent=Phyra82794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 127094 127795 . - 0 ID=Phyra82794;Parent=Phyra82794;rank=1 scaffold_77 . exon 127094 127795 . - . ID=Phyra82794.1;Parent=Phyra82794;constitutive=1;rank=1 scaffold_77 . repeat_region 128549 130895 . ? . description=dust scaffold_77 ensembl protein_coding_gene 131071 137343 . - . ID=Phyra82795;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000045;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 131071 137343 . - . ID=Phyra82795;Parent=Phyra82795;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 131071 137343 . - 0 ID=Phyra82795;Parent=Phyra82795;rank=1 scaffold_77 . exon 131071 137343 . - . ID=Phyra82795.1;Parent=Phyra82795;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 137899 139207 . + . ID=Phyra82796;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000046;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 137899 139207 . + . ID=Phyra82796;Parent=Phyra82796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 137899 138132 . + 0 ID=Phyra82796;Parent=Phyra82796;rank=1 scaffold_77 . exon 137899 138132 . + . ID=Phyra82796.1;Parent=Phyra82796;constitutive=1;rank=1 scaffold_77 . CDS 138207 138390 . + 0 ID=Phyra82796;Parent=Phyra82796;rank=2 scaffold_77 . CDS 138477 138686 . + 0 ID=Phyra82796;Parent=Phyra82796;rank=3 scaffold_77 . CDS 138761 139059 . + 0 ID=Phyra82796;Parent=Phyra82796;rank=4 scaffold_77 . CDS 139084 139152 . + 0 ID=Phyra82796;Parent=Phyra82796;rank=5 scaffold_77 . CDS 139178 139207 . + 0 ID=Phyra82796;Parent=Phyra82796;rank=6 scaffold_77 . exon 138207 138390 . + . ID=Phyra82796.2;Parent=Phyra82796;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_77 . exon 138477 138686 . + . ID=Phyra82796.3;Parent=Phyra82796;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_77 . exon 138761 139059 . + . ID=Phyra82796.4;Parent=Phyra82796;constitutive=1;ensembl_phase=1;rank=4 scaffold_77 . exon 139084 139152 . + . ID=Phyra82796.5;Parent=Phyra82796;constitutive=1;rank=5 scaffold_77 . exon 139178 139207 . + . ID=Phyra82796.6;Parent=Phyra82796;constitutive=1;rank=6 scaffold_77 ensembl protein_coding_gene 140082 140795 . - . ID=Phyra82797;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000047;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 140082 140795 . - . ID=Phyra82797;Parent=Phyra82797;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 140082 140795 . - 0 ID=Phyra82797;Parent=Phyra82797;rank=1 scaffold_77 . exon 140082 140795 . - . ID=Phyra82797.1;Parent=Phyra82797;constitutive=1;rank=1 scaffold_77 . repeat_region 145693 158367 . ? . description=dust scaffold_77 . repeat_region 158538 160721 . - . description=GypsyPi-1c_I-int scaffold_77 . biological_region 167351 167352 0.999 - . logic_name=eponine scaffold_77 ensembl protein_coding_gene 159711 160502 . - . ID=Phyra82798;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000048;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 159711 160502 . - . ID=Phyra82798;Parent=Phyra82798;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 159711 160502 . - 0 ID=Phyra82798;Parent=Phyra82798;rank=1 scaffold_77 . exon 159711 160502 . - . ID=Phyra82798.1;Parent=Phyra82798;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 167389 173515 . + . ID=Phyra82799;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000049;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 167389 173515 . + . ID=Phyra82799;Parent=Phyra82799;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 167389 167973 . + 0 ID=Phyra82799;Parent=Phyra82799;rank=1 scaffold_77 . exon 167389 167973 . + . ID=Phyra82799.1;Parent=Phyra82799;constitutive=1;rank=1 scaffold_77 . CDS 168199 169105 . + 0 ID=Phyra82799;Parent=Phyra82799;rank=2 scaffold_77 . CDS 169845 170009 . + 0 ID=Phyra82799;Parent=Phyra82799;rank=3 scaffold_77 . CDS 170481 173515 . + 0 ID=Phyra82799;Parent=Phyra82799;rank=4 scaffold_77 . repeat_region 168028 168162 . ? . description=dust scaffold_77 . repeat_region 168552 168623 . ? . description=trf scaffold_77 . repeat_region 177257 177270 . ? . description=dust scaffold_77 . exon 168199 169105 . + . ID=Phyra82799.2;Parent=Phyra82799;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_77 . exon 169845 170009 . + . ID=Phyra82799.3;Parent=Phyra82799;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_77 . exon 170481 173515 . + . ID=Phyra82799.4;Parent=Phyra82799;constitutive=1;ensembl_phase=1;rank=4 scaffold_77 ensembl protein_coding_gene 175530 176013 . - . ID=Phyra82800;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000050;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 175530 176013 . - . ID=Phyra82800;Parent=Phyra82800;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 175530 175862 . - 0 ID=Phyra82800;Parent=Phyra82800;rank=2 scaffold_77 . exon 175530 175862 . - . ID=Phyra82800.2;Parent=Phyra82800;constitutive=1;rank=2 scaffold_77 . CDS 175942 176013 . - 0 ID=Phyra82800;Parent=Phyra82800;rank=1 scaffold_77 . exon 175942 176013 . - . ID=Phyra82800.1;Parent=Phyra82800;constitutive=1;rank=1 scaffold_77 . biological_region 180970 180973 0.999 - . logic_name=eponine scaffold_77 . biological_region 181290 181291 0.999 - . logic_name=eponine scaffold_77 . biological_region 181994 181997 0.999 - . logic_name=eponine scaffold_77 . biological_region 186155 186159 0.999 + . logic_name=eponine scaffold_77 . biological_region 186221 186223 0.999 - . logic_name=eponine scaffold_77 . biological_region 186257 186260 0.999 + . logic_name=eponine scaffold_77 . repeat_region 186800 186874 . - . description=GypsyPi-1c_I-int scaffold_77 . repeat_region 187002 187074 . - . description=GypsyPi-1c_I-int scaffold_77 . repeat_region 187244 187437 . - . description=GypsyPi-1c_I-int scaffold_77 ensembl protein_coding_gene 181370 181771 . + . ID=Phyra82801;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000051;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 181370 181771 . + . ID=Phyra82801;Parent=Phyra82801;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 181370 181771 . + 0 ID=Phyra82801;Parent=Phyra82801;rank=1 scaffold_77 . exon 181370 181771 . + . ID=Phyra82801.1;Parent=Phyra82801;constitutive=1;rank=1 scaffold_77 . repeat_region 188673 188717 . ? . description=dust scaffold_77 . repeat_region 188681 188717 . ? . description=trf scaffold_77 . repeat_region 189301 189309 . ? . description=dust scaffold_77 . repeat_region 196606 201275 . ? . description=dust scaffold_77 . repeat_region 202719 203011 . - . description=GypsyPi-1c_I-int scaffold_77 . repeat_region 203259 203529 . - . description=GypsyPi-1c_I-int scaffold_77 . repeat_region 203559 204822 . - . description=GypsyPi-1c_I-int scaffold_77 . biological_region 203889 203894 0.999 - . logic_name=eponine scaffold_77 . repeat_region 204827 205128 . - . description=GypsyPi-1c_LTR scaffold_77 ensembl protein_coding_gene 203778 204735 . - . ID=Phyra82802;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000052;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 203778 204735 . - . ID=Phyra82802;Parent=Phyra82802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 203778 204623 . - 0 ID=Phyra82802;Parent=Phyra82802;rank=3 scaffold_77 . exon 203778 204623 . - . ID=Phyra82802.3;Parent=Phyra82802;constitutive=1;rank=3 scaffold_77 . CDS 204692 204696 . - 0 ID=Phyra82802;Parent=Phyra82802;rank=2 scaffold_77 . exon 204692 204696 . - . ID=Phyra82802.2;Parent=Phyra82802;constitutive=1;ensembl_phase=1;rank=2 scaffold_77 . CDS 204726 204735 . - 0 ID=Phyra82802;Parent=Phyra82802;rank=1 scaffold_77 . exon 204726 204735 . - . ID=Phyra82802.1;Parent=Phyra82802;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_77 . repeat_region 207927 207976 . ? . description=dust scaffold_77 . repeat_region 212884 212910 . ? . description=trf scaffold_77 . repeat_region 215199 215226 . ? . description=trf scaffold_77 ensembl protein_coding_gene 208253 208966 . + . ID=Phyra82803;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000053;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 208253 208966 . + . ID=Phyra82803;Parent=Phyra82803;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 208253 208966 . + 0 ID=Phyra82803;Parent=Phyra82803;rank=1 scaffold_77 . exon 208253 208966 . + . ID=Phyra82803.1;Parent=Phyra82803;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 209590 216855 . - . ID=Phyra82804;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000054;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 209590 216855 . - . ID=Phyra82804;Parent=Phyra82804;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 209590 216855 . - 0 ID=Phyra82804;Parent=Phyra82804;rank=1 scaffold_77 . exon 209590 216855 . - . ID=Phyra82804.1;Parent=Phyra82804;constitutive=1;rank=1 scaffold_77 . biological_region 223345 223346 0.999 + . logic_name=eponine scaffold_77 . biological_region 224003 224008 0.999 + . logic_name=eponine scaffold_77 . biological_region 224055 224060 0.999 + . logic_name=eponine scaffold_77 . repeat_region 225989 226277 . - . description=Sola3-2_PS scaffold_77 . biological_region 226661 226663 0.999 - . logic_name=eponine scaffold_77 ensembl protein_coding_gene 221356 226713 . - . ID=Phyra82805;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_77000055;logic_name=jgi_phyra1 scaffold_77 ensembl transcript 221356 226713 . - . ID=Phyra82805;Parent=Phyra82805;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_77 . CDS 221356 224451 . - 0 ID=Phyra82805;Parent=Phyra82805;rank=3 scaffold_77 . exon 221356 224451 . - . ID=Phyra82805.3;Parent=Phyra82805;constitutive=1;rank=3 scaffold_77 . CDS 224755 225000 . - 0 ID=Phyra82805;Parent=Phyra82805;rank=2 scaffold_77 . exon 224755 225000 . - . ID=Phyra82805.2;Parent=Phyra82805;constitutive=1;rank=2 scaffold_77 . CDS 225574 226713 . - 0 ID=Phyra82805;Parent=Phyra82805;rank=1 scaffold_77 . exon 225574 226713 . - . ID=Phyra82805.1;Parent=Phyra82805;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_76 1 238522 scaffold_76 . repeat_region 3443 3491 . ? . description=trf scaffold_76 . biological_region 3478 3480 0.999 + . logic_name=eponine scaffold_76 . biological_region 3529 3530 0.999 + . logic_name=eponine scaffold_76 . biological_region 3546 3551 0.999 - . logic_name=eponine scaffold_76 . biological_region 3577 3580 0.999 - . logic_name=eponine scaffold_76 . repeat_region 4797 4831 . ? . description=trf scaffold_76 . repeat_region 5428 5541 . ? . description=trf scaffold_76 . biological_region 5784 5784 0.999 + . logic_name=eponine scaffold_76 . biological_region 6119 6122 0.999 + . logic_name=eponine scaffold_76 . biological_region 6150 6155 0.999 + . logic_name=eponine scaffold_76 . biological_region 6665 6667 0.999 + . logic_name=eponine scaffold_76 . biological_region 6691 6694 0.999 + . logic_name=eponine scaffold_76 . biological_region 6909 6912 0.999 - . logic_name=eponine scaffold_76 . biological_region 7220 7226 0.999 + . logic_name=eponine scaffold_76 . biological_region 7242 7245 0.999 + . logic_name=eponine scaffold_76 . biological_region 7458 7463 0.999 - . logic_name=eponine scaffold_76 . biological_region 8467 8470 0.999 - . logic_name=eponine scaffold_76 . biological_region 8653 8654 0.999 - . logic_name=eponine scaffold_76 . biological_region 9494 9496 0.999 + . logic_name=eponine scaffold_76 . biological_region 9535 9538 0.999 + . logic_name=eponine scaffold_76 . repeat_region 9611 9887 . - . description=GypsyPi-1c_I-int scaffold_76 ensembl snRNA_gene 2992 3147 . + . ID=EPrPRAG00000000183;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_76 ensembl snRNA 2992 3147 . + . ID=EPrPRAT00000000183;Parent=EPrPRAG00000000183;biotype=snRNA;logic_name=ncrna_eg scaffold_76 . exon 2992 3147 . + . ID=EPrPRAE00000000183;Parent=EPrPRAT00000000183;constitutive=1;rank=1 scaffold_76 ensembl pseudogene 1691 2507 . + . ID=Phyra52970;biotype=pseudogene;external_name=gwEuk.76.8.1;logic_name=jgi_phyra1 scaffold_76 ensembl pseudogene 1691 2507 . + . ID=Phyra52970;Parent=Phyra52970;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_76 . exon 1691 2507 . + . ID=Phyra52970.1;Parent=Phyra52970;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 ensembl protein_coding_gene 3377 7334 . - . ID=Phyra82683;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000001;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 3377 7334 . - . ID=Phyra82683;Parent=Phyra82683;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 3377 3827 . - 0 ID=Phyra82683;Parent=Phyra82683;rank=7 scaffold_76 . exon 3377 3827 . - . ID=Phyra82683.7;Parent=Phyra82683;constitutive=1;ensembl_phase=2;rank=7 scaffold_76 . CDS 3857 4505 . - 0 ID=Phyra82683;Parent=Phyra82683;rank=6 scaffold_76 . exon 3857 4505 . - . ID=Phyra82683.6;Parent=Phyra82683;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_76 . CDS 4532 4720 . - 0 ID=Phyra82683;Parent=Phyra82683;rank=5 scaffold_76 . exon 4532 4720 . - . ID=Phyra82683.5;Parent=Phyra82683;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_76 . CDS 4779 5894 . - 0 ID=Phyra82683;Parent=Phyra82683;rank=4 scaffold_76 . exon 4779 5894 . - . ID=Phyra82683.4;Parent=Phyra82683;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_76 . CDS 6130 6619 . - 0 ID=Phyra82683;Parent=Phyra82683;rank=3 scaffold_76 . exon 6130 6619 . - . ID=Phyra82683.3;Parent=Phyra82683;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_76 . CDS 6639 7190 . - 0 ID=Phyra82683;Parent=Phyra82683;rank=2 scaffold_76 . exon 6639 7190 . - . ID=Phyra82683.2;Parent=Phyra82683;constitutive=1;rank=2 scaffold_76 . CDS 7221 7334 . - 0 ID=Phyra82683;Parent=Phyra82683;rank=1 scaffold_76 . exon 7221 7334 . - . ID=Phyra82683.1;Parent=Phyra82683;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 7992 9594 . + . ID=Phyra82684;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000002;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 7992 9594 . + . ID=Phyra82684;Parent=Phyra82684;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 7992 8871 . + 0 ID=Phyra82684;Parent=Phyra82684;rank=1 scaffold_76 . exon 7992 8871 . + . ID=Phyra82684.1;Parent=Phyra82684;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . CDS 8926 8943 . + 0 ID=Phyra82684;Parent=Phyra82684;rank=2 scaffold_76 . exon 8926 8943 . + . ID=Phyra82684.2;Parent=Phyra82684;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 8968 9165 . + 0 ID=Phyra82684;Parent=Phyra82684;rank=3 scaffold_76 . exon 8968 9165 . + . ID=Phyra82684.3;Parent=Phyra82684;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_76 . CDS 9202 9329 . + 0 ID=Phyra82684;Parent=Phyra82684;rank=4 scaffold_76 . exon 9202 9329 . + . ID=Phyra82684.4;Parent=Phyra82684;constitutive=1;ensembl_phase=1;rank=4 scaffold_76 . CDS 9385 9594 . + 0 ID=Phyra82684;Parent=Phyra82684;rank=5 scaffold_76 . exon 9385 9594 . + . ID=Phyra82684.5;Parent=Phyra82684;constitutive=1;rank=5 scaffold_76 ensembl protein_coding_gene 9813 12752 . - . ID=Phyra82685;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000003;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 9813 12752 . - . ID=Phyra82685;Parent=Phyra82685;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 9813 10053 . - 0 ID=Phyra82685;Parent=Phyra82685;rank=3 scaffold_76 . exon 9813 10053 . - . ID=Phyra82685.3;Parent=Phyra82685;constitutive=1;ensembl_phase=2;rank=3 scaffold_76 . CDS 10141 10394 . - 0 ID=Phyra82685;Parent=Phyra82685;rank=2 scaffold_76 . CDS 10731 12752 . - 0 ID=Phyra82685;Parent=Phyra82685;rank=1 scaffold_76 . repeat_region 13324 13760 . ? . description=dust scaffold_76 . repeat_region 15391 15440 . ? . description=dust scaffold_76 . repeat_region 17934 17983 . ? . description=dust scaffold_76 ensembl snRNA_gene 17728 17872 . - . ID=EPrPRAG00000000154;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_76 ensembl snRNA 17728 17872 . - . ID=EPrPRAT00000000154;Parent=EPrPRAG00000000154;biotype=snRNA;logic_name=ncrna_eg scaffold_76 . exon 17728 17872 . - . ID=EPrPRAE00000000154;Parent=EPrPRAT00000000154;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . exon 10141 10394 . - . ID=Phyra82685.2;Parent=Phyra82685;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_76 . exon 10731 12752 . - . ID=Phyra82685.1;Parent=Phyra82685;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 15466 18520 . - . ID=Phyra82686;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000004;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 15466 18520 . - . ID=Phyra82686;Parent=Phyra82686;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 15466 15480 . - 0 ID=Phyra82686;Parent=Phyra82686;rank=7 scaffold_76 . exon 15466 15480 . - . ID=Phyra82686.7;Parent=Phyra82686;constitutive=1;rank=7 scaffold_76 . CDS 15525 16115 . - 0 ID=Phyra82686;Parent=Phyra82686;rank=6 scaffold_76 . exon 15525 16115 . - . ID=Phyra82686.6;Parent=Phyra82686;constitutive=1;rank=6 scaffold_76 . CDS 16255 16734 . - 0 ID=Phyra82686;Parent=Phyra82686;rank=5 scaffold_76 . exon 16255 16734 . - . ID=Phyra82686.5;Parent=Phyra82686;constitutive=1;rank=5 scaffold_76 . CDS 16781 17036 . - 0 ID=Phyra82686;Parent=Phyra82686;rank=4 scaffold_76 . exon 16781 17036 . - . ID=Phyra82686.4;Parent=Phyra82686;constitutive=1;ensembl_phase=2;rank=4 scaffold_76 . CDS 17090 17472 . - 0 ID=Phyra82686;Parent=Phyra82686;rank=3 scaffold_76 . exon 17090 17472 . - . ID=Phyra82686.3;Parent=Phyra82686;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_76 . CDS 17638 17654 . - 0 ID=Phyra82686;Parent=Phyra82686;rank=2 scaffold_76 . exon 17638 17654 . - . ID=Phyra82686.2;Parent=Phyra82686;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 17989 18520 . - 0 ID=Phyra82686;Parent=Phyra82686;rank=1 scaffold_76 . exon 17989 18520 . - . ID=Phyra82686.1;Parent=Phyra82686;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 ensembl protein_coding_gene 18745 19662 . + . ID=Phyra82687;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000005;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 18745 19662 . + . ID=Phyra82687;Parent=Phyra82687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 18745 19036 . + 0 ID=Phyra82687;Parent=Phyra82687;rank=1 scaffold_76 . exon 18745 19036 . + . ID=Phyra82687.1;Parent=Phyra82687;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . CDS 19100 19662 . + 0 ID=Phyra82687;Parent=Phyra82687;rank=2 scaffold_76 . exon 19100 19662 . + . ID=Phyra82687.2;Parent=Phyra82687;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 . biological_region 21416 21417 0.999 + . logic_name=eponine scaffold_76 . biological_region 21523 21524 0.999 + . logic_name=eponine scaffold_76 . biological_region 22521 22524 0.999 + . logic_name=eponine scaffold_76 . biological_region 23056 23058 0.999 + . logic_name=eponine scaffold_76 . biological_region 23120 23124 0.999 + . logic_name=eponine scaffold_76 . biological_region 23164 23170 0.999 - . logic_name=eponine scaffold_76 . biological_region 23547 23549 0.999 + . logic_name=eponine scaffold_76 . biological_region 23616 23624 0.999 - . logic_name=eponine scaffold_76 . biological_region 24255 24260 0.999 + . logic_name=eponine scaffold_76 . biological_region 24369 24371 0.999 - . logic_name=eponine scaffold_76 . biological_region 24792 24794 0.999 - . logic_name=eponine scaffold_76 . biological_region 25136 25140 0.999 + . logic_name=eponine scaffold_76 . biological_region 25310 25311 0.999 - . logic_name=eponine scaffold_76 . biological_region 25362 25367 0.999 + . logic_name=eponine scaffold_76 . biological_region 25396 25399 0.999 + . logic_name=eponine scaffold_76 . biological_region 25426 25426 0.999 + . logic_name=eponine scaffold_76 . repeat_region 25911 25935 . ? . description=trf scaffold_76 . biological_region 26111 26112 0.999 + . logic_name=eponine scaffold_76 . biological_region 27332 27334 0.999 + . logic_name=eponine scaffold_76 . biological_region 27341 27341 0.999 - . logic_name=eponine scaffold_76 . biological_region 27614 27616 0.999 - . logic_name=eponine scaffold_76 . biological_region 27632 27639 0.999 - . logic_name=eponine scaffold_76 ensembl snRNA_gene 26734 26878 . - . ID=EPrPRAG00000000059;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_76 ensembl snRNA 26734 26878 . - . ID=EPrPRAT00000000059;Parent=EPrPRAG00000000059;biotype=snRNA;logic_name=ncrna_eg scaffold_76 ensembl snRNA_gene 21690 21879 . - . ID=EPrPRAG00000000101;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_76 ensembl snRNA 21690 21879 . - . ID=EPrPRAT00000000101;Parent=EPrPRAG00000000101;biotype=snRNA;logic_name=ncrna_eg scaffold_76 ensembl snRNA_gene 22216 22360 . - . ID=EPrPRAG00000000109;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_76 ensembl snRNA 22216 22360 . - . ID=EPrPRAT00000000109;Parent=EPrPRAG00000000109;biotype=snRNA;logic_name=ncrna_eg scaffold_76 ensembl snRNA_gene 26337 26417 . - . ID=EPrPRAG00000000130;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_76 ensembl snRNA 26337 26417 . - . ID=EPrPRAT00000000130;Parent=EPrPRAG00000000130;biotype=snRNA;logic_name=ncrna_eg scaffold_76 . exon 26734 26878 . - . ID=EPrPRAE00000000059;Parent=EPrPRAT00000000059;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . exon 21690 21879 . - . ID=EPrPRAE00000000101;Parent=EPrPRAT00000000101;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . exon 22216 22360 . - . ID=EPrPRAE00000000109;Parent=EPrPRAT00000000109;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . exon 26337 26417 . - . ID=EPrPRAE00000000130;Parent=EPrPRAT00000000130;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 22552 26186 . - . ID=Phyra82688;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000006;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 22552 26186 . - . ID=Phyra82688;Parent=Phyra82688;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 22552 23052 . - 0 ID=Phyra82688;Parent=Phyra82688;rank=3 scaffold_76 . exon 22552 23052 . - . ID=Phyra82688.3;Parent=Phyra82688;constitutive=1;rank=3 scaffold_76 . CDS 23123 23713 . - 0 ID=Phyra82688;Parent=Phyra82688;rank=2 scaffold_76 . exon 23123 23713 . - . ID=Phyra82688.2;Parent=Phyra82688;constitutive=1;rank=2 scaffold_76 . CDS 23763 26186 . - 0 ID=Phyra82688;Parent=Phyra82688;rank=1 scaffold_76 . exon 23763 26186 . - . ID=Phyra82688.1;Parent=Phyra82688;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 27171 27881 . - . ID=Phyra82689;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000007;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 27171 27881 . - . ID=Phyra82689;Parent=Phyra82689;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 27171 27881 . - 0 ID=Phyra82689;Parent=Phyra82689;rank=1 scaffold_76 . exon 27171 27881 . - . ID=Phyra82689.1;Parent=Phyra82689;constitutive=1;rank=1 scaffold_76 . repeat_region 27941 32680 . ? . description=dust scaffold_76 . repeat_region 35823 39923 . ? . description=dust scaffold_76 ensembl snRNA_gene 32960 33150 . - . ID=EPrPRAG00000000085;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_76 ensembl snRNA 32960 33150 . - . ID=EPrPRAT00000000085;Parent=EPrPRAG00000000085;biotype=snRNA;logic_name=ncrna_eg scaffold_76 . exon 32960 33150 . - . ID=EPrPRAE00000000085;Parent=EPrPRAT00000000085;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_76 ensembl protein_coding_gene 33351 35510 . - . ID=Phyra82690;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000008;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 33351 35510 . - . ID=Phyra82690;Parent=Phyra82690;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 33351 35510 . - 0 ID=Phyra82690;Parent=Phyra82690;rank=1 scaffold_76 . exon 33351 35510 . - . ID=Phyra82690.1;Parent=Phyra82690;constitutive=1;rank=1 scaffold_76 . biological_region 40220 40223 0.999 + . logic_name=eponine scaffold_76 . biological_region 40607 40609 0.999 + . logic_name=eponine scaffold_76 . biological_region 41774 41775 0.999 + . logic_name=eponine scaffold_76 . biological_region 41902 41904 0.999 - . logic_name=eponine scaffold_76 . biological_region 42091 42096 0.999 - . logic_name=eponine scaffold_76 . biological_region 42147 42150 0.999 + . logic_name=eponine scaffold_76 . biological_region 42378 42378 0.999 - . logic_name=eponine scaffold_76 . biological_region 43123 43125 0.999 + . logic_name=eponine scaffold_76 . biological_region 43449 43452 0.999 + . logic_name=eponine scaffold_76 . biological_region 44574 44575 0.999 + . logic_name=eponine scaffold_76 . biological_region 44615 44620 0.999 + . logic_name=eponine scaffold_76 . biological_region 44663 44669 0.999 + . logic_name=eponine scaffold_76 . biological_region 44681 44683 0.999 - . logic_name=eponine scaffold_76 . biological_region 44736 44741 0.999 + . logic_name=eponine scaffold_76 . biological_region 44761 44767 0.999 + . logic_name=eponine scaffold_76 . biological_region 44838 44841 0.999 - . logic_name=eponine scaffold_76 . biological_region 44984 44989 0.999 + . logic_name=eponine scaffold_76 . biological_region 45001 45004 0.999 + . logic_name=eponine scaffold_76 . biological_region 45026 45030 0.999 + . logic_name=eponine scaffold_76 . biological_region 45041 45047 0.999 - . logic_name=eponine scaffold_76 . biological_region 45080 45086 0.999 - . logic_name=eponine scaffold_76 ensembl protein_coding_gene 40204 43566 . - . ID=Phyra82691;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000009;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 40204 43566 . - . ID=Phyra82691;Parent=Phyra82691;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 40204 43566 . - 0 ID=Phyra82691;Parent=Phyra82691;rank=1 scaffold_76 . exon 40204 43566 . - . ID=Phyra82691.1;Parent=Phyra82691;constitutive=1;rank=1 scaffold_76 . repeat_region 45315 58509 . ? . description=dust scaffold_76 ensembl snRNA_gene 58683 58827 . - . ID=EPrPRAG00000000013;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_76 ensembl snRNA 58683 58827 . - . ID=EPrPRAT00000000013;Parent=EPrPRAG00000000013;biotype=snRNA;logic_name=ncrna_eg scaffold_76 . exon 58683 58827 . - . ID=EPrPRAE00000000013;Parent=EPrPRAT00000000013;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 ensembl protein_coding_gene 59019 64896 . - . ID=Phyra82692;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000010;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 59019 64896 . - . ID=Phyra82692;Parent=Phyra82692;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 59019 60869 . - 0 ID=Phyra82692;Parent=Phyra82692;rank=4 scaffold_76 . exon 59019 60869 . - . ID=Phyra82692.4;Parent=Phyra82692;constitutive=1;rank=4 scaffold_76 . CDS 61294 61942 . - 0 ID=Phyra82692;Parent=Phyra82692;rank=3 scaffold_76 . CDS 62082 62954 . - 0 ID=Phyra82692;Parent=Phyra82692;rank=2 scaffold_76 . CDS 64388 64896 . - 0 ID=Phyra82692;Parent=Phyra82692;rank=1 scaffold_76 . biological_region 59788 59789 0.999 - . logic_name=eponine scaffold_76 . biological_region 59934 59937 0.999 + . logic_name=eponine scaffold_76 . biological_region 60011 60017 0.999 + . logic_name=eponine scaffold_76 . biological_region 60028 60032 0.999 - . logic_name=eponine scaffold_76 . biological_region 60055 60057 0.999 + . logic_name=eponine scaffold_76 . biological_region 60114 60121 0.999 - . logic_name=eponine scaffold_76 . biological_region 60139 60145 0.999 - . logic_name=eponine scaffold_76 . biological_region 60170 60176 0.999 + . logic_name=eponine scaffold_76 . biological_region 60217 60217 0.999 - . logic_name=eponine scaffold_76 . biological_region 60335 60339 0.999 + . logic_name=eponine scaffold_76 . biological_region 61325 61330 0.999 + . logic_name=eponine scaffold_76 . biological_region 61759 61765 0.999 - . logic_name=eponine scaffold_76 . biological_region 62145 62149 0.999 + . logic_name=eponine scaffold_76 . biological_region 62302 62309 0.999 + . logic_name=eponine scaffold_76 . biological_region 62368 62374 0.999 - . logic_name=eponine scaffold_76 . biological_region 62405 62408 0.999 - . logic_name=eponine scaffold_76 . biological_region 62777 62780 0.999 + . logic_name=eponine scaffold_76 . biological_region 62802 62806 0.999 + . logic_name=eponine scaffold_76 . biological_region 62879 62883 0.999 - . logic_name=eponine scaffold_76 . biological_region 64994 65000 0.999 - . logic_name=eponine scaffold_76 . biological_region 65706 65709 0.999 + . logic_name=eponine scaffold_76 . repeat_region 68229 68262 . ? . description=trf scaffold_76 . repeat_region 68661 68684 . ? . description=trf scaffold_76 . exon 61294 61942 . - . ID=Phyra82692.3;Parent=Phyra82692;constitutive=1;ensembl_phase=2;rank=3 scaffold_76 . exon 62082 62954 . - . ID=Phyra82692.2;Parent=Phyra82692;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_76 . exon 64388 64896 . - . ID=Phyra82692.1;Parent=Phyra82692;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_76 ensembl protein_coding_gene 65296 66177 . + . ID=Phyra82693;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000011;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 65296 66177 . + . ID=Phyra82693;Parent=Phyra82693;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 65296 66177 . + 0 ID=Phyra82693;Parent=Phyra82693;rank=1 scaffold_76 . exon 65296 66177 . + . ID=Phyra82693.1;Parent=Phyra82693;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 66325 74449 . - . ID=Phyra96407;biotype=protein_coding;external_name=C_scaffold_76000002;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 66325 74449 . - . ID=Phyra96407;Parent=Phyra96407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 66325 66530 . - 0 ID=Phyra96407;Parent=Phyra96407;rank=17 scaffold_76 . exon 66325 66530 . - . ID=Phyra96407.17;Parent=Phyra96407;constitutive=1;ensembl_phase=1;rank=17 scaffold_76 . CDS 66612 66733 . - 0 ID=Phyra96407;Parent=Phyra96407;rank=16 scaffold_76 . exon 66612 66733 . - . ID=Phyra96407.16;Parent=Phyra96407;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=16 scaffold_76 . CDS 66803 67158 . - 0 ID=Phyra96407;Parent=Phyra96407;rank=15 scaffold_76 . exon 66803 67158 . - . ID=Phyra96407.15;Parent=Phyra96407;constitutive=1;ensembl_end_phase=2;rank=15 scaffold_76 . CDS 67256 67543 . - 0 ID=Phyra96407;Parent=Phyra96407;rank=14 scaffold_76 . exon 67256 67543 . - . ID=Phyra96407.14;Parent=Phyra96407;constitutive=1;rank=14 scaffold_76 . CDS 67604 67711 . - 0 ID=Phyra96407;Parent=Phyra96407;rank=13 scaffold_76 . exon 67604 67711 . - . ID=Phyra96407.13;Parent=Phyra96407;constitutive=1;rank=13 scaffold_76 . CDS 67793 67945 . - 0 ID=Phyra96407;Parent=Phyra96407;rank=12 scaffold_76 . exon 67793 67945 . - . ID=Phyra96407.12;Parent=Phyra96407;constitutive=1;rank=12 scaffold_76 . CDS 68006 68111 . - 0 ID=Phyra96407;Parent=Phyra96407;rank=11 scaffold_76 . exon 68006 68111 . - . ID=Phyra96407.11;Parent=Phyra96407;constitutive=1;ensembl_phase=2;rank=11 scaffold_76 . CDS 68229 68335 . - 0 ID=Phyra96407;Parent=Phyra96407;rank=10 scaffold_76 . exon 68229 68335 . - . ID=Phyra96407.10;Parent=Phyra96407;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_76 . CDS 68384 68597 . - 0 ID=Phyra96407;Parent=Phyra96407;rank=9 scaffold_76 . exon 68384 68597 . - . ID=Phyra96407.9;Parent=Phyra96407;constitutive=1;ensembl_phase=2;rank=9 scaffold_76 . CDS 69264 69378 . - 0 ID=Phyra96407;Parent=Phyra96407;rank=8 scaffold_76 . exon 69264 69378 . - . ID=Phyra96407.8;Parent=Phyra96407;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_76 . CDS 69459 70484 . - 0 ID=Phyra96407;Parent=Phyra96407;rank=7 scaffold_76 . exon 69459 70484 . - . ID=Phyra96407.7;Parent=Phyra96407;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_76 . CDS 70506 71144 . - 0 ID=Phyra96407;Parent=Phyra96407;rank=6 scaffold_76 . CDS 71181 72123 . - 0 ID=Phyra96407;Parent=Phyra96407;rank=5 scaffold_76 . CDS 72210 72266 . - 0 ID=Phyra96407;Parent=Phyra96407;rank=4 scaffold_76 . CDS 72333 72685 . - 0 ID=Phyra96407;Parent=Phyra96407;rank=3 scaffold_76 . CDS 72949 74325 . - 0 ID=Phyra96407;Parent=Phyra96407;rank=2 scaffold_76 . CDS 74365 74449 . - 0 ID=Phyra96407;Parent=Phyra96407;rank=1 scaffold_76 ensembl protein_coding_gene 76588 78582 . + . ID=Phyra82697;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000015;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 76588 78582 . + . ID=Phyra82697;Parent=Phyra82697;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 76588 78582 . + 0 ID=Phyra82697;Parent=Phyra82697;rank=1 scaffold_76 . exon 76588 78582 . + . ID=Phyra82697.1;Parent=Phyra82697;constitutive=1;rank=1 scaffold_76 . exon 70506 71144 . - . ID=Phyra96407.6;Parent=Phyra96407;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_76 . exon 71181 72123 . - . ID=Phyra96407.5;Parent=Phyra96407;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_76 . exon 72210 72266 . - . ID=Phyra96407.4;Parent=Phyra96407;constitutive=1;rank=4 scaffold_76 . exon 72333 72685 . - . ID=Phyra96407.3;Parent=Phyra96407;constitutive=1;ensembl_phase=1;rank=3 scaffold_76 . exon 72949 74325 . - . ID=Phyra96407.2;Parent=Phyra96407;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_76 . exon 74365 74449 . - . ID=Phyra96407.1;Parent=Phyra96407;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . repeat_region 81802 81809 . ? . description=dust scaffold_76 . biological_region 83643 83644 0.999 + . logic_name=eponine scaffold_76 . biological_region 83684 83689 0.999 + . logic_name=eponine scaffold_76 . repeat_region 84830 84839 . ? . description=dust scaffold_76 . biological_region 85313 85315 0.999 + . logic_name=eponine scaffold_76 . biological_region 85378 85380 0.999 + . logic_name=eponine scaffold_76 . biological_region 85400 85406 0.999 - . logic_name=eponine scaffold_76 . biological_region 85425 85430 0.999 - . logic_name=eponine scaffold_76 . biological_region 85481 85485 0.999 + . logic_name=eponine scaffold_76 . biological_region 86489 86492 0.999 - . logic_name=eponine scaffold_76 . repeat_region 88043 88054 . ? . description=dust scaffold_76 . biological_region 88173 88179 0.999 - . logic_name=eponine scaffold_76 . biological_region 88545 88546 0.999 + . logic_name=eponine scaffold_76 . repeat_region 88581 88608 . ? . description=trf scaffold_76 ensembl protein_coding_gene 81915 83972 . - . ID=Phyra82698;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000016;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 81915 83972 . - . ID=Phyra82698;Parent=Phyra82698;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 81915 83972 . - 0 ID=Phyra82698;Parent=Phyra82698;rank=1 scaffold_76 . exon 81915 83972 . - . ID=Phyra82698.1;Parent=Phyra82698;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 85290 86159 . + . ID=Phyra96408;biotype=protein_coding;external_name=C_scaffold_76000003;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 85290 86159 . + . ID=Phyra96408;Parent=Phyra96408;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 85290 86031 . + 0 ID=Phyra96408;Parent=Phyra96408;rank=1 scaffold_76 . exon 85290 86031 . + . ID=Phyra96408.1;Parent=Phyra96408;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . CDS 86053 86159 . + 0 ID=Phyra96408;Parent=Phyra96408;rank=2 scaffold_76 . exon 86053 86159 . + . ID=Phyra96408.2;Parent=Phyra96408;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 ensembl protein_coding_gene 86835 87819 . - . ID=Phyra96409;biotype=protein_coding;external_name=C_scaffold_76000004;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 86835 87819 . - . ID=Phyra96409;Parent=Phyra96409;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 86835 87169 . - 0 ID=Phyra96409;Parent=Phyra96409;rank=4 scaffold_76 . exon 86835 87169 . - . ID=Phyra96409.4;Parent=Phyra96409;constitutive=1;ensembl_phase=1;rank=4 scaffold_76 . CDS 87228 87420 . - 0 ID=Phyra96409;Parent=Phyra96409;rank=3 scaffold_76 . exon 87228 87420 . - . ID=Phyra96409.3;Parent=Phyra96409;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_76 . CDS 87489 87664 . - 0 ID=Phyra96409;Parent=Phyra96409;rank=2 scaffold_76 . exon 87489 87664 . - . ID=Phyra96409.2;Parent=Phyra96409;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 87729 87819 . - 0 ID=Phyra96409;Parent=Phyra96409;rank=1 scaffold_76 . exon 87729 87819 . - . ID=Phyra96409.1;Parent=Phyra96409;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 ensembl protein_coding_gene 88741 90070 . + . ID=Phyra96410;biotype=protein_coding;external_name=C_scaffold_76000005;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 88741 90070 . + . ID=Phyra96410;Parent=Phyra96410;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 88741 88951 . + 0 ID=Phyra96410;Parent=Phyra96410;rank=1 scaffold_76 . exon 88741 88951 . + . ID=Phyra96410.1;Parent=Phyra96410;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . CDS 89073 90070 . + 0 ID=Phyra96410;Parent=Phyra96410;rank=2 scaffold_76 . exon 89073 90070 . + . ID=Phyra96410.2;Parent=Phyra96410;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 ensembl protein_coding_gene 90723 91254 . - . ID=Phyra82702;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000020;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 90723 91254 . - . ID=Phyra82702;Parent=Phyra82702;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 90723 91187 . - 0 ID=Phyra82702;Parent=Phyra82702;rank=2 scaffold_76 . exon 90723 91187 . - . ID=Phyra82702.2;Parent=Phyra82702;constitutive=1;rank=2 scaffold_76 . CDS 91252 91254 . - 0 ID=Phyra82702;Parent=Phyra82702;rank=1 scaffold_76 . exon 91252 91254 . - . ID=Phyra82702.1;Parent=Phyra82702;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 92186 94191 . - . ID=Phyra82703;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000021;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 92186 94191 . - . ID=Phyra82703;Parent=Phyra82703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 92186 92399 . - 0 ID=Phyra82703;Parent=Phyra82703;rank=9 scaffold_76 . exon 92186 92399 . - . ID=Phyra82703.9;Parent=Phyra82703;constitutive=1;ensembl_phase=2;rank=9 scaffold_76 . CDS 92466 92651 . - 0 ID=Phyra82703;Parent=Phyra82703;rank=8 scaffold_76 . exon 92466 92651 . - . ID=Phyra82703.8;Parent=Phyra82703;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_76 . CDS 92796 92913 . - 0 ID=Phyra82703;Parent=Phyra82703;rank=7 scaffold_76 . exon 92796 92913 . - . ID=Phyra82703.7;Parent=Phyra82703;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_76 . CDS 92979 93163 . - 0 ID=Phyra82703;Parent=Phyra82703;rank=6 scaffold_76 . exon 92979 93163 . - . ID=Phyra82703.6;Parent=Phyra82703;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_76 . CDS 93221 93314 . - 0 ID=Phyra82703;Parent=Phyra82703;rank=5 scaffold_76 . exon 93221 93314 . - . ID=Phyra82703.5;Parent=Phyra82703;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_76 . CDS 93389 93482 . - 0 ID=Phyra82703;Parent=Phyra82703;rank=4 scaffold_76 . exon 93389 93482 . - . ID=Phyra82703.4;Parent=Phyra82703;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_76 . CDS 93544 93627 . - 0 ID=Phyra82703;Parent=Phyra82703;rank=3 scaffold_76 . exon 93544 93627 . - . ID=Phyra82703.3;Parent=Phyra82703;constitutive=1;rank=3 scaffold_76 . CDS 93838 93998 . - 0 ID=Phyra82703;Parent=Phyra82703;rank=2 scaffold_76 . exon 93838 93998 . - . ID=Phyra82703.2;Parent=Phyra82703;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 94065 94191 . - 0 ID=Phyra82703;Parent=Phyra82703;rank=1 scaffold_76 . exon 94065 94191 . - . ID=Phyra82703.1;Parent=Phyra82703;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 ensembl protein_coding_gene 94306 99206 . + . ID=Phyra82704;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000022;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 94306 99206 . + . ID=Phyra82704;Parent=Phyra82704;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 94306 94339 . + 0 ID=Phyra82704;Parent=Phyra82704;rank=1 scaffold_76 . exon 94306 94339 . + . ID=Phyra82704.1;Parent=Phyra82704;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . CDS 94444 94862 . + 0 ID=Phyra82704;Parent=Phyra82704;rank=2 scaffold_76 . exon 94444 94862 . + . ID=Phyra82704.2;Parent=Phyra82704;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 94882 94956 . + 0 ID=Phyra82704;Parent=Phyra82704;rank=3 scaffold_76 . exon 94882 94956 . + . ID=Phyra82704.3;Parent=Phyra82704;constitutive=1;rank=3 scaffold_76 . CDS 95012 95107 . + 0 ID=Phyra82704;Parent=Phyra82704;rank=4 scaffold_76 . exon 95012 95107 . + . ID=Phyra82704.4;Parent=Phyra82704;constitutive=1;rank=4 scaffold_76 . CDS 95230 95309 . + 0 ID=Phyra82704;Parent=Phyra82704;rank=5 scaffold_76 . exon 95230 95309 . + . ID=Phyra82704.5;Parent=Phyra82704;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_76 . CDS 95399 95858 . + 0 ID=Phyra82704;Parent=Phyra82704;rank=6 scaffold_76 . exon 95399 95858 . + . ID=Phyra82704.6;Parent=Phyra82704;constitutive=1;ensembl_phase=2;rank=6 scaffold_76 . CDS 95979 96079 . + 0 ID=Phyra82704;Parent=Phyra82704;rank=7 scaffold_76 . exon 95979 96079 . + . ID=Phyra82704.7;Parent=Phyra82704;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_76 . CDS 96149 96250 . + 0 ID=Phyra82704;Parent=Phyra82704;rank=8 scaffold_76 . exon 96149 96250 . + . ID=Phyra82704.8;Parent=Phyra82704;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_76 . CDS 96333 96390 . + 0 ID=Phyra82704;Parent=Phyra82704;rank=9 scaffold_76 . exon 96333 96390 . + . ID=Phyra82704.9;Parent=Phyra82704;constitutive=1;ensembl_phase=2;rank=9 scaffold_76 . CDS 96430 96441 . + 0 ID=Phyra82704;Parent=Phyra82704;rank=10 scaffold_76 . exon 96430 96441 . + . ID=Phyra82704.10;Parent=Phyra82704;constitutive=1;rank=10 scaffold_76 . CDS 96526 96793 . + 0 ID=Phyra82704;Parent=Phyra82704;rank=11 scaffold_76 . exon 96526 96793 . + . ID=Phyra82704.11;Parent=Phyra82704;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_76 . CDS 97154 98463 . + 0 ID=Phyra82704;Parent=Phyra82704;rank=12 scaffold_76 . exon 97154 98463 . + . ID=Phyra82704.12;Parent=Phyra82704;constitutive=1;ensembl_phase=1;rank=12 scaffold_76 . CDS 98486 98501 . + 0 ID=Phyra82704;Parent=Phyra82704;rank=13 scaffold_76 . exon 98486 98501 . + . ID=Phyra82704.13;Parent=Phyra82704;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_76 . CDS 98608 98744 . + 0 ID=Phyra82704;Parent=Phyra82704;rank=14 scaffold_76 . exon 98608 98744 . + . ID=Phyra82704.14;Parent=Phyra82704;constitutive=1;ensembl_phase=1;rank=14 scaffold_76 . CDS 98811 99206 . + 0 ID=Phyra82704;Parent=Phyra82704;rank=15 scaffold_76 . exon 98811 99206 . + . ID=Phyra82704.15;Parent=Phyra82704;constitutive=1;rank=15 scaffold_76 . biological_region 99682 99688 0.999 + . logic_name=eponine scaffold_76 . repeat_region 103181 103209 . ? . description=trf scaffold_76 . biological_region 103273 103275 0.999 - . logic_name=eponine scaffold_76 . biological_region 109060 109064 0.999 + . logic_name=eponine scaffold_76 ensembl protein_coding_gene 100538 102999 . - . ID=Phyra82706;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000024;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 100538 102999 . - . ID=Phyra82706;Parent=Phyra82706;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 100538 101281 . - 0 ID=Phyra82706;Parent=Phyra82706;rank=2 scaffold_76 . exon 100538 101281 . - . ID=Phyra82706.2;Parent=Phyra82706;constitutive=1;rank=2 scaffold_76 . CDS 101530 102999 . - 0 ID=Phyra82706;Parent=Phyra82706;rank=1 scaffold_76 . exon 101530 102999 . - . ID=Phyra82706.1;Parent=Phyra82706;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 103493 105044 . + . ID=Phyra82707;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000025;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 103493 105044 . + . ID=Phyra82707;Parent=Phyra82707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 103493 103505 . + 0 ID=Phyra82707;Parent=Phyra82707;rank=1 scaffold_76 . exon 103493 103505 . + . ID=Phyra82707.1;Parent=Phyra82707;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . CDS 103567 104738 . + 0 ID=Phyra82707;Parent=Phyra82707;rank=2 scaffold_76 . exon 103567 104738 . + . ID=Phyra82707.2;Parent=Phyra82707;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 104836 104898 . + 0 ID=Phyra82707;Parent=Phyra82707;rank=3 scaffold_76 . exon 104836 104898 . + . ID=Phyra82707.3;Parent=Phyra82707;constitutive=1;rank=3 scaffold_76 . CDS 104952 105044 . + 0 ID=Phyra82707;Parent=Phyra82707;rank=4 scaffold_76 . exon 104952 105044 . + . ID=Phyra82707.4;Parent=Phyra82707;constitutive=1;rank=4 scaffold_76 ensembl protein_coding_gene 106212 108639 . + . ID=Phyra82708;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000026;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 106212 108639 . + . ID=Phyra82708;Parent=Phyra82708;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 106212 106732 . + 0 ID=Phyra82708;Parent=Phyra82708;rank=1 scaffold_76 . exon 106212 106732 . + . ID=Phyra82708.1;Parent=Phyra82708;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_76 . CDS 107064 107739 . + 0 ID=Phyra82708;Parent=Phyra82708;rank=2 scaffold_76 . exon 107064 107739 . + . ID=Phyra82708.2;Parent=Phyra82708;constitutive=1;ensembl_phase=2;rank=2 scaffold_76 . CDS 107799 108140 . + 0 ID=Phyra82708;Parent=Phyra82708;rank=3 scaffold_76 . exon 107799 108140 . + . ID=Phyra82708.3;Parent=Phyra82708;constitutive=1;rank=3 scaffold_76 . CDS 108214 108639 . + 0 ID=Phyra82708;Parent=Phyra82708;rank=4 scaffold_76 . exon 108214 108639 . + . ID=Phyra82708.4;Parent=Phyra82708;constitutive=1;rank=4 scaffold_76 ensembl protein_coding_gene 99585 100187 . + . ID=Phyra96414;biotype=protein_coding;external_name=C_scaffold_76000009;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 99585 100187 . + . ID=Phyra96414;Parent=Phyra96414;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 99585 100187 . + 0 ID=Phyra96414;Parent=Phyra96414;rank=1 scaffold_76 . exon 99585 100187 . + . ID=Phyra96414.1;Parent=Phyra96414;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 108682 110324 . - . ID=Phyra96416;biotype=protein_coding;external_name=C_scaffold_76000011;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 108682 110324 . - . ID=Phyra96416;Parent=Phyra96416;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 108682 108716 . - 0 ID=Phyra96416;Parent=Phyra96416;rank=4 scaffold_76 . exon 108682 108716 . - . ID=Phyra96416.4;Parent=Phyra96416;constitutive=1;ensembl_phase=1;rank=4 scaffold_76 . CDS 108840 109221 . - 0 ID=Phyra96416;Parent=Phyra96416;rank=3 scaffold_76 . exon 108840 109221 . - . ID=Phyra96416.3;Parent=Phyra96416;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_76 . CDS 109290 109571 . - 0 ID=Phyra96416;Parent=Phyra96416;rank=2 scaffold_76 . exon 109290 109571 . - . ID=Phyra96416.2;Parent=Phyra96416;constitutive=1;rank=2 scaffold_76 . CDS 109698 110324 . - 0 ID=Phyra96416;Parent=Phyra96416;rank=1 scaffold_76 . exon 109698 110324 . - . ID=Phyra96416.1;Parent=Phyra96416;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 110595 115633 . - . ID=Phyra96417;biotype=protein_coding;external_name=C_scaffold_76000012;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 110595 115633 . - . ID=Phyra96417;Parent=Phyra96417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 110595 111038 . - 0 ID=Phyra96417;Parent=Phyra96417;rank=16 scaffold_76 . exon 110595 111038 . - . ID=Phyra96417.16;Parent=Phyra96417;constitutive=1;rank=16 scaffold_76 . CDS 111121 111465 . - 0 ID=Phyra96417;Parent=Phyra96417;rank=15 scaffold_76 . exon 111121 111465 . - . ID=Phyra96417.15;Parent=Phyra96417;constitutive=1;rank=15 scaffold_76 . CDS 111533 111692 . - 0 ID=Phyra96417;Parent=Phyra96417;rank=14 scaffold_76 . exon 111533 111692 . - . ID=Phyra96417.14;Parent=Phyra96417;constitutive=1;ensembl_phase=2;rank=14 scaffold_76 . CDS 111729 111882 . - 0 ID=Phyra96417;Parent=Phyra96417;rank=13 scaffold_76 . exon 111729 111882 . - . ID=Phyra96417.13;Parent=Phyra96417;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=13 scaffold_76 . CDS 111955 112217 . - 0 ID=Phyra96417;Parent=Phyra96417;rank=12 scaffold_76 . exon 111955 112217 . - . ID=Phyra96417.12;Parent=Phyra96417;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_76 . CDS 112473 112891 . - 0 ID=Phyra96417;Parent=Phyra96417;rank=11 scaffold_76 . exon 112473 112891 . - . ID=Phyra96417.11;Parent=Phyra96417;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_76 . CDS 112967 113311 . - 0 ID=Phyra96417;Parent=Phyra96417;rank=10 scaffold_76 . exon 112967 113311 . - . ID=Phyra96417.10;Parent=Phyra96417;constitutive=1;rank=10 scaffold_76 . CDS 113387 113602 . - 0 ID=Phyra96417;Parent=Phyra96417;rank=9 scaffold_76 . exon 113387 113602 . - . ID=Phyra96417.9;Parent=Phyra96417;constitutive=1;rank=9 scaffold_76 . CDS 113639 113847 . - 0 ID=Phyra96417;Parent=Phyra96417;rank=8 scaffold_76 . exon 113639 113847 . - . ID=Phyra96417.8;Parent=Phyra96417;constitutive=1;ensembl_phase=1;rank=8 scaffold_76 . CDS 113884 114018 . - 0 ID=Phyra96417;Parent=Phyra96417;rank=7 scaffold_76 . exon 113884 114018 . - . ID=Phyra96417.7;Parent=Phyra96417;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_76 . CDS 114044 114099 . - 0 ID=Phyra96417;Parent=Phyra96417;rank=6 scaffold_76 . exon 114044 114099 . - . ID=Phyra96417.6;Parent=Phyra96417;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_76 . CDS 114138 114565 . - 0 ID=Phyra96417;Parent=Phyra96417;rank=5 scaffold_76 . exon 114138 114565 . - . ID=Phyra96417.5;Parent=Phyra96417;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_76 . CDS 114622 114966 . - 0 ID=Phyra96417;Parent=Phyra96417;rank=4 scaffold_76 . exon 114622 114966 . - . ID=Phyra96417.4;Parent=Phyra96417;constitutive=1;rank=4 scaffold_76 . CDS 115031 115171 . - 0 ID=Phyra96417;Parent=Phyra96417;rank=3 scaffold_76 . exon 115031 115171 . - . ID=Phyra96417.3;Parent=Phyra96417;constitutive=1;rank=3 scaffold_76 . CDS 115193 115365 . - 0 ID=Phyra96417;Parent=Phyra96417;rank=2 scaffold_76 . exon 115193 115365 . - . ID=Phyra96417.2;Parent=Phyra96417;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 115420 115633 . - 0 ID=Phyra96417;Parent=Phyra96417;rank=1 scaffold_76 . exon 115420 115633 . - . ID=Phyra96417.1;Parent=Phyra96417;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 ensembl protein_coding_gene 117021 120558 . + . ID=Phyra96418;biotype=protein_coding;external_name=C_scaffold_76000013;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 117021 120558 . + . ID=Phyra96418;Parent=Phyra96418;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 117021 117168 . + 0 ID=Phyra96418;Parent=Phyra96418;rank=1 scaffold_76 . exon 117021 117168 . + . ID=Phyra96418.1;Parent=Phyra96418;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . CDS 117243 117831 . + 0 ID=Phyra96418;Parent=Phyra96418;rank=2 scaffold_76 . exon 117243 117831 . + . ID=Phyra96418.2;Parent=Phyra96418;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_76 . CDS 118539 120159 . + 0 ID=Phyra96418;Parent=Phyra96418;rank=3 scaffold_76 . exon 118539 120159 . + . ID=Phyra96418.3;Parent=Phyra96418;constitutive=1;ensembl_phase=2;rank=3 scaffold_76 . CDS 120205 120558 . + 0 ID=Phyra96418;Parent=Phyra96418;rank=4 scaffold_76 . biological_region 121147 121151 0.999 + . logic_name=eponine scaffold_76 . biological_region 121172 121176 0.999 - . logic_name=eponine scaffold_76 . biological_region 122480 122482 0.999 - . logic_name=eponine scaffold_76 . repeat_region 128359 128415 . ? . description=trf scaffold_76 ensembl protein_coding_gene 120763 122440 . - . ID=Phyra72041;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_76000002;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 120763 122440 . - . ID=Phyra72041;Parent=Phyra72041;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 120763 122264 . - 0 ID=Phyra72041;Parent=Phyra72041;rank=2 scaffold_76 . exon 120763 122264 . - . ID=Phyra72041.2;Parent=Phyra72041;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 122341 122440 . - 0 ID=Phyra72041;Parent=Phyra72041;rank=1 scaffold_76 . exon 122341 122440 . - . ID=Phyra72041.1;Parent=Phyra72041;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 ensembl protein_coding_gene 122800 123360 . + . ID=Phyra82714;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000032;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 122800 123360 . + . ID=Phyra82714;Parent=Phyra82714;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 122800 123360 . + 0 ID=Phyra82714;Parent=Phyra82714;rank=1 scaffold_76 . exon 122800 123360 . + . ID=Phyra82714.1;Parent=Phyra82714;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 127255 128562 . - . ID=Phyra82715;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000033;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 127255 128562 . - . ID=Phyra82715;Parent=Phyra82715;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 127255 128562 . - 0 ID=Phyra82715;Parent=Phyra82715;rank=1 scaffold_76 . exon 127255 128562 . - . ID=Phyra82715.1;Parent=Phyra82715;constitutive=1;rank=1 scaffold_76 . exon 120205 120558 . + . ID=Phyra96418.4;Parent=Phyra96418;constitutive=1;rank=4 scaffold_76 . repeat_region 136445 138685 . + . description=GypsyPi-1c_I-int scaffold_76 . repeat_region 139104 139205 . ? . description=dust scaffold_76 ensembl protein_coding_gene 130708 131688 . + . ID=Phyra82716;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000034;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 130708 131688 . + . ID=Phyra82716;Parent=Phyra82716;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 130708 131688 . + 0 ID=Phyra82716;Parent=Phyra82716;rank=1 scaffold_76 . exon 130708 131688 . + . ID=Phyra82716.1;Parent=Phyra82716;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 133965 138369 . + . ID=Phyra82717;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000035;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 133965 138369 . + . ID=Phyra82717;Parent=Phyra82717;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 133965 134228 . + 0 ID=Phyra82717;Parent=Phyra82717;rank=1 scaffold_76 . exon 133965 134228 . + . ID=Phyra82717.1;Parent=Phyra82717;constitutive=1;rank=1 scaffold_76 . CDS 134283 134868 . + 0 ID=Phyra82717;Parent=Phyra82717;rank=2 scaffold_76 . exon 134283 134868 . + . ID=Phyra82717.2;Parent=Phyra82717;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_76 . CDS 134961 135094 . + 0 ID=Phyra82717;Parent=Phyra82717;rank=3 scaffold_76 . exon 134961 135094 . + . ID=Phyra82717.3;Parent=Phyra82717;constitutive=1;ensembl_phase=1;rank=3 scaffold_76 . CDS 135299 135496 . + 0 ID=Phyra82717;Parent=Phyra82717;rank=4 scaffold_76 . exon 135299 135496 . + . ID=Phyra82717.4;Parent=Phyra82717;constitutive=1;rank=4 scaffold_76 . CDS 135610 137464 . + 0 ID=Phyra82717;Parent=Phyra82717;rank=5 scaffold_76 . exon 135610 137464 . + . ID=Phyra82717.5;Parent=Phyra82717;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_76 . CDS 137677 138170 . + 0 ID=Phyra82717;Parent=Phyra82717;rank=6 scaffold_76 . exon 137677 138170 . + . ID=Phyra82717.6;Parent=Phyra82717;constitutive=1;ensembl_phase=1;rank=6 scaffold_76 . CDS 138355 138369 . + 0 ID=Phyra82717;Parent=Phyra82717;rank=7 scaffold_76 . exon 138355 138369 . + . ID=Phyra82717.7;Parent=Phyra82717;constitutive=1;rank=7 scaffold_76 ensembl protein_coding_gene 138897 140164 . - . ID=Phyra82718;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000036;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 138897 140164 . - . ID=Phyra82718;Parent=Phyra82718;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 138897 139024 . - 0 ID=Phyra82718;Parent=Phyra82718;rank=2 scaffold_76 . exon 138897 139024 . - . ID=Phyra82718.2;Parent=Phyra82718;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 139285 140164 . - 0 ID=Phyra82718;Parent=Phyra82718;rank=1 scaffold_76 . biological_region 139503 139504 0.999 + . logic_name=eponine scaffold_76 . biological_region 139685 139690 0.999 + . logic_name=eponine scaffold_76 . biological_region 140830 140830 0.999 + . logic_name=eponine scaffold_76 . repeat_region 141037 141091 . ? . description=trf scaffold_76 . repeat_region 144609 144665 . ? . description=trf scaffold_76 ensembl protein_coding_gene 146391 148003 . + . ID=Phyra72042;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_76000003;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 146391 148003 . + . ID=Phyra72042;Parent=Phyra72042;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 146391 146506 . + 0 ID=Phyra72042;Parent=Phyra72042;rank=1 scaffold_76 . exon 146391 146506 . + . ID=Phyra72042.1;Parent=Phyra72042;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_76 . CDS 146580 146671 . + 0 ID=Phyra72042;Parent=Phyra72042;rank=2 scaffold_76 . exon 146580 146671 . + . ID=Phyra72042.2;Parent=Phyra72042;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_76 . CDS 146746 146857 . + 0 ID=Phyra72042;Parent=Phyra72042;rank=3 scaffold_76 . exon 146746 146857 . + . ID=Phyra72042.3;Parent=Phyra72042;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_76 . CDS 146939 147061 . + 0 ID=Phyra72042;Parent=Phyra72042;rank=4 scaffold_76 . exon 146939 147061 . + . ID=Phyra72042.4;Parent=Phyra72042;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_76 . CDS 147131 147903 . + 0 ID=Phyra72042;Parent=Phyra72042;rank=5 scaffold_76 . exon 147131 147903 . + . ID=Phyra72042.5;Parent=Phyra72042;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_76 . CDS 147966 148003 . + 0 ID=Phyra72042;Parent=Phyra72042;rank=6 scaffold_76 . exon 147966 148003 . + . ID=Phyra72042.6;Parent=Phyra72042;constitutive=1;ensembl_phase=1;rank=6 scaffold_76 . exon 139285 140164 . - . ID=Phyra82718.1;Parent=Phyra82718;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 ensembl protein_coding_gene 141632 142612 . - . ID=Phyra82719;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000037;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 141632 142612 . - . ID=Phyra82719;Parent=Phyra82719;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 141632 142612 . - 0 ID=Phyra82719;Parent=Phyra82719;rank=1 scaffold_76 . exon 141632 142612 . - . ID=Phyra82719.1;Parent=Phyra82719;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 144462 145769 . + . ID=Phyra82720;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000038;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 144462 145769 . + . ID=Phyra82720;Parent=Phyra82720;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 144462 145769 . + 0 ID=Phyra82720;Parent=Phyra82720;rank=1 scaffold_76 . exon 144462 145769 . + . ID=Phyra82720.1;Parent=Phyra82720;constitutive=1;rank=1 scaffold_76 . repeat_region 151985 151993 . ? . description=dust scaffold_76 . repeat_region 152448 152455 . ? . description=dust scaffold_76 . repeat_region 154599 154606 . ? . description=dust scaffold_76 ensembl protein_coding_gene 151380 151823 . - . ID=Phyra82722;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000040;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 151380 151823 . - . ID=Phyra82722;Parent=Phyra82722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 151380 151823 . - 0 ID=Phyra82722;Parent=Phyra82722;rank=1 scaffold_76 . exon 151380 151823 . - . ID=Phyra82722.1;Parent=Phyra82722;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 153951 154460 . - . ID=Phyra82723;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000041;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 153951 154460 . - . ID=Phyra82723;Parent=Phyra82723;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 153951 154460 . - 0 ID=Phyra82723;Parent=Phyra82723;rank=1 scaffold_76 . exon 153951 154460 . - . ID=Phyra82723.1;Parent=Phyra82723;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 155788 156309 . - . ID=Phyra82724;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000042;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 155788 156309 . - . ID=Phyra82724;Parent=Phyra82724;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 155788 156309 . - 0 ID=Phyra82724;Parent=Phyra82724;rank=1 scaffold_76 . exon 155788 156309 . - . ID=Phyra82724.1;Parent=Phyra82724;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 158117 158566 . - . ID=Phyra82725;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000043;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 158117 158566 . - . ID=Phyra82725;Parent=Phyra82725;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 158117 158566 . - 0 ID=Phyra82725;Parent=Phyra82725;rank=1 scaffold_76 . exon 158117 158566 . - . ID=Phyra82725.1;Parent=Phyra82725;constitutive=1;rank=1 scaffold_76 . biological_region 160284 160285 0.999 + . logic_name=eponine scaffold_76 . repeat_region 160509 160554 . ? . description=trf scaffold_76 . biological_region 160536 160538 0.999 + . logic_name=eponine scaffold_76 . biological_region 160554 160563 0.999 - . logic_name=eponine scaffold_76 . biological_region 162486 162489 0.999 - . logic_name=eponine scaffold_76 . biological_region 164910 164913 0.999 - . logic_name=eponine scaffold_76 . biological_region 166465 166474 0.999 + . logic_name=eponine scaffold_76 . biological_region 166824 166829 0.999 - . logic_name=eponine scaffold_76 . biological_region 167461 167464 0.999 - . logic_name=eponine scaffold_76 ensembl protein_coding_gene 161174 162796 . + . ID=Phyra82726;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000044;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 161174 162796 . + . ID=Phyra82726;Parent=Phyra82726;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 161174 161953 . + 0 ID=Phyra82726;Parent=Phyra82726;rank=1 scaffold_76 . exon 161174 161953 . + . ID=Phyra82726.1;Parent=Phyra82726;constitutive=1;rank=1 scaffold_76 . CDS 162176 162796 . + 0 ID=Phyra82726;Parent=Phyra82726;rank=2 scaffold_76 . exon 162176 162796 . + . ID=Phyra82726.2;Parent=Phyra82726;constitutive=1;rank=2 scaffold_76 ensembl protein_coding_gene 162944 165138 . + . ID=Phyra82727;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000045;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 162944 165138 . + . ID=Phyra82727;Parent=Phyra82727;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 162944 162992 . + 0 ID=Phyra82727;Parent=Phyra82727;rank=1 scaffold_76 . exon 162944 162992 . + . ID=Phyra82727.1;Parent=Phyra82727;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . CDS 163055 165138 . + 0 ID=Phyra82727;Parent=Phyra82727;rank=2 scaffold_76 . exon 163055 165138 . + . ID=Phyra82727.2;Parent=Phyra82727;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 ensembl protein_coding_gene 167013 167534 . + . ID=Phyra82728;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000046;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 167013 167534 . + . ID=Phyra82728;Parent=Phyra82728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 167013 167534 . + 0 ID=Phyra82728;Parent=Phyra82728;rank=1 scaffold_76 . exon 167013 167534 . + . ID=Phyra82728.1;Parent=Phyra82728;constitutive=1;rank=1 scaffold_76 . repeat_region 170952 171000 . ? . description=dust scaffold_76 . repeat_region 171107 171147 . ? . description=dust scaffold_76 . repeat_region 171324 171371 . ? . description=dust scaffold_76 . repeat_region 175509 175516 . ? . description=dust scaffold_76 ensembl protein_coding_gene 171674 175313 . - . ID=Phyra72043;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_76000004;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 171674 175313 . - . ID=Phyra72043;Parent=Phyra72043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 171674 171979 . - 0 ID=Phyra72043;Parent=Phyra72043;rank=6 scaffold_76 . exon 171674 171979 . - . ID=Phyra72043.6;Parent=Phyra72043;constitutive=1;rank=6 scaffold_76 . CDS 172055 172315 . - 0 ID=Phyra72043;Parent=Phyra72043;rank=5 scaffold_76 . exon 172055 172315 . - . ID=Phyra72043.5;Parent=Phyra72043;constitutive=1;rank=5 scaffold_76 . CDS 172397 174463 . - 0 ID=Phyra72043;Parent=Phyra72043;rank=4 scaffold_76 . exon 172397 174463 . - . ID=Phyra72043.4;Parent=Phyra72043;constitutive=1;rank=4 scaffold_76 . CDS 174573 174857 . - 0 ID=Phyra72043;Parent=Phyra72043;rank=3 scaffold_76 . exon 174573 174857 . - . ID=Phyra72043.3;Parent=Phyra72043;constitutive=1;rank=3 scaffold_76 . CDS 174935 175027 . - 0 ID=Phyra72043;Parent=Phyra72043;rank=2 scaffold_76 . exon 174935 175027 . - . ID=Phyra72043.2;Parent=Phyra72043;constitutive=1;rank=2 scaffold_76 . CDS 175095 175313 . - 0 ID=Phyra72043;Parent=Phyra72043;rank=1 scaffold_76 . exon 175095 175313 . - . ID=Phyra72043.1;Parent=Phyra72043;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 170276 171492 . - . ID=Phyra82729;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000047;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 170276 171492 . - . ID=Phyra82729;Parent=Phyra82729;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 170276 170395 . - 0 ID=Phyra82729;Parent=Phyra82729;rank=2 scaffold_76 . exon 170276 170395 . - . ID=Phyra82729.2;Parent=Phyra82729;constitutive=1;rank=2 scaffold_76 . CDS 170755 171492 . - 0 ID=Phyra82729;Parent=Phyra82729;rank=1 scaffold_76 . exon 170755 171492 . - . ID=Phyra82729.1;Parent=Phyra82729;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 176140 179183 . + . ID=Phyra82731;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000049;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 176140 179183 . + . ID=Phyra82731;Parent=Phyra82731;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 176140 176422 . + 0 ID=Phyra82731;Parent=Phyra82731;rank=1 scaffold_76 . exon 176140 176422 . + . ID=Phyra82731.1;Parent=Phyra82731;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . CDS 176506 177263 . + 0 ID=Phyra82731;Parent=Phyra82731;rank=2 scaffold_76 . exon 176506 177263 . + . ID=Phyra82731.2;Parent=Phyra82731;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 177969 178805 . + 0 ID=Phyra82731;Parent=Phyra82731;rank=3 scaffold_76 . exon 177969 178805 . + . ID=Phyra82731.3;Parent=Phyra82731;constitutive=1;rank=3 scaffold_76 . CDS 178899 179183 . + 0 ID=Phyra82731;Parent=Phyra82731;rank=4 scaffold_76 . exon 178899 179183 . + . ID=Phyra82731.4;Parent=Phyra82731;constitutive=1;rank=4 scaffold_76 . biological_region 184340 184347 0.999 + . logic_name=eponine scaffold_76 . biological_region 184427 184430 0.999 - . logic_name=eponine scaffold_76 . repeat_region 185672 185706 . ? . description=trf scaffold_76 ensembl protein_coding_gene 182462 183257 . + . ID=Phyra53003;biotype=protein_coding;external_name=gwEuk.76.41.1;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 182462 183257 . + . ID=Phyra53003;Parent=Phyra53003;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 182462 182539 . + 0 ID=Phyra53003;Parent=Phyra53003;rank=1 scaffold_76 . exon 182462 182539 . + . ID=Phyra53003.1;Parent=Phyra53003;constitutive=1;rank=1 scaffold_76 . CDS 182625 182696 . + 0 ID=Phyra53003;Parent=Phyra53003;rank=2 scaffold_76 . exon 182625 182696 . + . ID=Phyra53003.2;Parent=Phyra53003;constitutive=1;rank=2 scaffold_76 . CDS 182758 182856 . + 0 ID=Phyra53003;Parent=Phyra53003;rank=3 scaffold_76 . exon 182758 182856 . + . ID=Phyra53003.3;Parent=Phyra53003;constitutive=1;rank=3 scaffold_76 . CDS 182920 183038 . + 0 ID=Phyra53003;Parent=Phyra53003;rank=4 scaffold_76 . exon 182920 183038 . + . ID=Phyra53003.4;Parent=Phyra53003;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_76 . CDS 183137 183257 . + 0 ID=Phyra53003;Parent=Phyra53003;rank=5 scaffold_76 . exon 183137 183257 . + . ID=Phyra53003.5;Parent=Phyra53003;constitutive=1;ensembl_phase=2;rank=5 scaffold_76 ensembl protein_coding_gene 183584 184566 . - . ID=Phyra82733;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000051;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 183584 184566 . - . ID=Phyra82733;Parent=Phyra82733;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 183584 183608 . - 0 ID=Phyra82733;Parent=Phyra82733;rank=2 scaffold_76 . exon 183584 183608 . - . ID=Phyra82733.2;Parent=Phyra82733;constitutive=1;ensembl_phase=2;rank=2 scaffold_76 . CDS 183638 184566 . - 0 ID=Phyra82733;Parent=Phyra82733;rank=1 scaffold_76 . exon 183638 184566 . - . ID=Phyra82733.1;Parent=Phyra82733;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_76 ensembl protein_coding_gene 185988 186707 . + . ID=Phyra82734;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000052;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 185988 186707 . + . ID=Phyra82734;Parent=Phyra82734;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 185988 186707 . + 0 ID=Phyra82734;Parent=Phyra82734;rank=1 scaffold_76 . exon 185988 186707 . + . ID=Phyra82734.1;Parent=Phyra82734;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 188091 189488 . + . ID=Phyra82735;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000053;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 188091 189488 . + . ID=Phyra82735;Parent=Phyra82735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 188091 189488 . + 0 ID=Phyra82735;Parent=Phyra82735;rank=1 scaffold_76 . exon 188091 189488 . + . ID=Phyra82735.1;Parent=Phyra82735;constitutive=1;rank=1 scaffold_76 . repeat_region 189839 189849 . ? . description=dust scaffold_76 . repeat_region 191278 191292 . ? . description=dust scaffold_76 ensembl protein_coding_gene 190273 191037 . + . ID=Phyra82736;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000054;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 190273 191037 . + . ID=Phyra82736;Parent=Phyra82736;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 190273 191037 . + 0 ID=Phyra82736;Parent=Phyra82736;rank=1 scaffold_76 . exon 190273 191037 . + . ID=Phyra82736.1;Parent=Phyra82736;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 191675 194690 . + . ID=Phyra82737;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000055;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 191675 194690 . + . ID=Phyra82737;Parent=Phyra82737;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 191675 191741 . + 0 ID=Phyra82737;Parent=Phyra82737;rank=1 scaffold_76 . exon 191675 191741 . + . ID=Phyra82737.1;Parent=Phyra82737;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . CDS 191819 192090 . + 0 ID=Phyra82737;Parent=Phyra82737;rank=2 scaffold_76 . exon 191819 192090 . + . ID=Phyra82737.2;Parent=Phyra82737;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 192166 192279 . + 0 ID=Phyra82737;Parent=Phyra82737;rank=3 scaffold_76 . exon 192166 192279 . + . ID=Phyra82737.3;Parent=Phyra82737;constitutive=1;rank=3 scaffold_76 . CDS 192347 192962 . + 0 ID=Phyra82737;Parent=Phyra82737;rank=4 scaffold_76 . exon 192347 192962 . + . ID=Phyra82737.4;Parent=Phyra82737;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_76 . CDS 193227 193405 . + 0 ID=Phyra82737;Parent=Phyra82737;rank=5 scaffold_76 . exon 193227 193405 . + . ID=Phyra82737.5;Parent=Phyra82737;constitutive=1;ensembl_phase=1;rank=5 scaffold_76 . CDS 193467 193590 . + 0 ID=Phyra82737;Parent=Phyra82737;rank=6 scaffold_76 . exon 193467 193590 . + . ID=Phyra82737.6;Parent=Phyra82737;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_76 . CDS 193663 194690 . + 0 ID=Phyra82737;Parent=Phyra82737;rank=7 scaffold_76 . exon 193663 194690 . + . ID=Phyra82737.7;Parent=Phyra82737;constitutive=1;ensembl_phase=1;rank=7 scaffold_76 ensembl protein_coding_gene 197832 201197 . + . ID=Phyra82739;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000057;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 197832 201197 . + . ID=Phyra82739;Parent=Phyra82739;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 197832 201197 . + 0 ID=Phyra82739;Parent=Phyra82739;rank=1 scaffold_76 . exon 197832 201197 . + . ID=Phyra82739.1;Parent=Phyra82739;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 194799 197199 . - . ID=Phyra96427;biotype=protein_coding;external_name=C_scaffold_76000022;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 194799 197199 . - . ID=Phyra96427;Parent=Phyra96427;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 194799 194899 . - 0 ID=Phyra96427;Parent=Phyra96427;rank=7 scaffold_76 . exon 194799 194899 . - . ID=Phyra96427.7;Parent=Phyra96427;constitutive=1;ensembl_phase=1;rank=7 scaffold_76 . CDS 194983 195484 . - 0 ID=Phyra96427;Parent=Phyra96427;rank=6 scaffold_76 . exon 194983 195484 . - . ID=Phyra96427.6;Parent=Phyra96427;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_76 . CDS 195613 195815 . - 0 ID=Phyra96427;Parent=Phyra96427;rank=5 scaffold_76 . exon 195613 195815 . - . ID=Phyra96427.5;Parent=Phyra96427;constitutive=1;ensembl_phase=1;rank=5 scaffold_76 . CDS 195849 196329 . - 0 ID=Phyra96427;Parent=Phyra96427;rank=4 scaffold_76 . exon 195849 196329 . - . ID=Phyra96427.4;Parent=Phyra96427;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_76 . CDS 196390 196819 . - 0 ID=Phyra96427;Parent=Phyra96427;rank=3 scaffold_76 . exon 196390 196819 . - . ID=Phyra96427.3;Parent=Phyra96427;constitutive=1;ensembl_phase=2;rank=3 scaffold_76 . CDS 196884 197018 . - 0 ID=Phyra96427;Parent=Phyra96427;rank=2 scaffold_76 . exon 196884 197018 . - . ID=Phyra96427.2;Parent=Phyra96427;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_76 . CDS 197087 197199 . - 0 ID=Phyra96427;Parent=Phyra96427;rank=1 scaffold_76 . exon 197087 197199 . - . ID=Phyra96427.1;Parent=Phyra96427;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_76 . biological_region 206243 206246 0.999 + . logic_name=eponine scaffold_76 . biological_region 206554 206559 0.999 + . logic_name=eponine scaffold_76 . biological_region 206628 206635 0.999 + . logic_name=eponine scaffold_76 . biological_region 206727 206728 0.999 - . logic_name=eponine scaffold_76 . biological_region 206776 206779 0.999 - . logic_name=eponine scaffold_76 . biological_region 207245 207251 0.999 + . logic_name=eponine scaffold_76 ensembl protein_coding_gene 207174 207845 . - . ID=Phyra72044;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_76000005;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 207174 207845 . - . ID=Phyra72044;Parent=Phyra72044;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 207174 207659 . - 0 ID=Phyra72044;Parent=Phyra72044;rank=2 scaffold_76 . exon 207174 207659 . - . ID=Phyra72044.2;Parent=Phyra72044;constitutive=1;rank=2 scaffold_76 . CDS 207735 207845 . - 0 ID=Phyra72044;Parent=Phyra72044;rank=1 scaffold_76 . exon 207735 207845 . - . ID=Phyra72044.1;Parent=Phyra72044;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 201381 203061 . - . ID=Phyra82740;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000058;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 201381 203061 . - . ID=Phyra82740;Parent=Phyra82740;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 201381 202686 . - 0 ID=Phyra82740;Parent=Phyra82740;rank=3 scaffold_76 . exon 201381 202686 . - . ID=Phyra82740.3;Parent=Phyra82740;constitutive=1;ensembl_phase=2;rank=3 scaffold_76 . CDS 202756 202890 . - 0 ID=Phyra82740;Parent=Phyra82740;rank=2 scaffold_76 . exon 202756 202890 . - . ID=Phyra82740.2;Parent=Phyra82740;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_76 . CDS 202949 203061 . - 0 ID=Phyra82740;Parent=Phyra82740;rank=1 scaffold_76 . exon 202949 203061 . - . ID=Phyra82740.1;Parent=Phyra82740;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_76 ensembl protein_coding_gene 204825 206920 . - . ID=Phyra82741;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000059;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 204825 206920 . - . ID=Phyra82741;Parent=Phyra82741;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 204825 205875 . - 0 ID=Phyra82741;Parent=Phyra82741;rank=2 scaffold_76 . exon 204825 205875 . - . ID=Phyra82741.2;Parent=Phyra82741;constitutive=1;ensembl_phase=2;rank=2 scaffold_76 . CDS 205947 206920 . - 0 ID=Phyra82741;Parent=Phyra82741;rank=1 scaffold_76 . exon 205947 206920 . - . ID=Phyra82741.1;Parent=Phyra82741;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_76 ensembl protein_coding_gene 208024 210208 . + . ID=Phyra82743;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000061;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 208024 210208 . + . ID=Phyra82743;Parent=Phyra82743;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 208024 208112 . + 0 ID=Phyra82743;Parent=Phyra82743;rank=1 scaffold_76 . exon 208024 208112 . + . ID=Phyra82743.1;Parent=Phyra82743;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_76 . CDS 208210 208300 . + 0 ID=Phyra82743;Parent=Phyra82743;rank=2 scaffold_76 . exon 208210 208300 . + . ID=Phyra82743.2;Parent=Phyra82743;constitutive=1;ensembl_phase=2;rank=2 scaffold_76 . CDS 208367 208394 . + 0 ID=Phyra82743;Parent=Phyra82743;rank=3 scaffold_76 . exon 208367 208394 . + . ID=Phyra82743.3;Parent=Phyra82743;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_76 . CDS 208461 208565 . + 0 ID=Phyra82743;Parent=Phyra82743;rank=4 scaffold_76 . exon 208461 208565 . + . ID=Phyra82743.4;Parent=Phyra82743;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_76 . CDS 208648 208789 . + 0 ID=Phyra82743;Parent=Phyra82743;rank=5 scaffold_76 . exon 208648 208789 . + . ID=Phyra82743.5;Parent=Phyra82743;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_76 . CDS 208863 209057 . + 0 ID=Phyra82743;Parent=Phyra82743;rank=6 scaffold_76 . CDS 209128 209179 . + 0 ID=Phyra82743;Parent=Phyra82743;rank=7 scaffold_76 . CDS 209277 209420 . + 0 ID=Phyra82743;Parent=Phyra82743;rank=8 scaffold_76 . CDS 209521 209684 . + 0 ID=Phyra82743;Parent=Phyra82743;rank=9 scaffold_76 . CDS 209773 209895 . + 0 ID=Phyra82743;Parent=Phyra82743;rank=10 scaffold_76 . CDS 209980 210208 . + 0 ID=Phyra82743;Parent=Phyra82743;rank=11 scaffold_76 . exon 208863 209057 . + . ID=Phyra82743.6;Parent=Phyra82743;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_76 . exon 209128 209179 . + . ID=Phyra82743.7;Parent=Phyra82743;constitutive=1;ensembl_phase=2;rank=7 scaffold_76 . exon 209277 209420 . + . ID=Phyra82743.8;Parent=Phyra82743;constitutive=1;rank=8 scaffold_76 . exon 209521 209684 . + . ID=Phyra82743.9;Parent=Phyra82743;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_76 . exon 209773 209895 . + . ID=Phyra82743.10;Parent=Phyra82743;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_76 . exon 209980 210208 . + . ID=Phyra82743.11;Parent=Phyra82743;constitutive=1;ensembl_phase=2;rank=11 scaffold_76 ensembl protein_coding_gene 210618 211694 . - . ID=Phyra82744;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000062;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 210618 211694 . - . ID=Phyra82744;Parent=Phyra82744;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 210618 210691 . - 0 ID=Phyra82744;Parent=Phyra82744;rank=6 scaffold_76 . exon 210618 210691 . - . ID=Phyra82744.6;Parent=Phyra82744;constitutive=1;ensembl_phase=1;rank=6 scaffold_76 . CDS 210768 210856 . - 0 ID=Phyra82744;Parent=Phyra82744;rank=5 scaffold_76 . exon 210768 210856 . - . ID=Phyra82744.5;Parent=Phyra82744;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_76 . CDS 210926 210957 . - 0 ID=Phyra82744;Parent=Phyra82744;rank=4 scaffold_76 . exon 210926 210957 . - . ID=Phyra82744.4;Parent=Phyra82744;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_76 . CDS 211028 211091 . - 0 ID=Phyra82744;Parent=Phyra82744;rank=3 scaffold_76 . exon 211028 211091 . - . ID=Phyra82744.3;Parent=Phyra82744;constitutive=1;ensembl_phase=2;rank=3 scaffold_76 . CDS 211157 211258 . - 0 ID=Phyra82744;Parent=Phyra82744;rank=2 scaffold_76 . exon 211157 211258 . - . ID=Phyra82744.2;Parent=Phyra82744;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_76 . CDS 211324 211694 . - 0 ID=Phyra82744;Parent=Phyra82744;rank=1 scaffold_76 . exon 211324 211694 . - . ID=Phyra82744.1;Parent=Phyra82744;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_76 ensembl protein_coding_gene 212284 212922 . + . ID=Phyra82745;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000063;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 212284 212922 . + . ID=Phyra82745;Parent=Phyra82745;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 212284 212337 . + 0 ID=Phyra82745;Parent=Phyra82745;rank=1 scaffold_76 . exon 212284 212337 . + . ID=Phyra82745.1;Parent=Phyra82745;constitutive=1;rank=1 scaffold_76 . CDS 212398 212922 . + 0 ID=Phyra82745;Parent=Phyra82745;rank=2 scaffold_76 . exon 212398 212922 . + . ID=Phyra82745.2;Parent=Phyra82745;constitutive=1;rank=2 scaffold_76 ensembl protein_coding_gene 213311 214315 . - . ID=Phyra82746;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000064;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 213311 214315 . - . ID=Phyra82746;Parent=Phyra82746;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 213311 214315 . - 0 ID=Phyra82746;Parent=Phyra82746;rank=1 scaffold_76 . exon 213311 214315 . - . ID=Phyra82746.1;Parent=Phyra82746;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 215094 216536 . + . ID=Phyra82747;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000065;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 215094 216536 . + . ID=Phyra82747;Parent=Phyra82747;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 215094 216536 . + 0 ID=Phyra82747;Parent=Phyra82747;rank=1 scaffold_76 . exon 215094 216536 . + . ID=Phyra82747.1;Parent=Phyra82747;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 216667 217308 . - . ID=Phyra82748;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000066;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 216667 217308 . - . ID=Phyra82748;Parent=Phyra82748;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 216667 216726 . - 0 ID=Phyra82748;Parent=Phyra82748;rank=5 scaffold_76 . exon 216667 216726 . - . ID=Phyra82748.5;Parent=Phyra82748;constitutive=1;rank=5 scaffold_76 . CDS 216796 216858 . - 0 ID=Phyra82748;Parent=Phyra82748;rank=4 scaffold_76 . exon 216796 216858 . - . ID=Phyra82748.4;Parent=Phyra82748;constitutive=1;rank=4 scaffold_76 . CDS 216920 216992 . - 0 ID=Phyra82748;Parent=Phyra82748;rank=3 scaffold_76 . exon 216920 216992 . - . ID=Phyra82748.3;Parent=Phyra82748;constitutive=1;ensembl_phase=2;rank=3 scaffold_76 . CDS 217062 217216 . - 0 ID=Phyra82748;Parent=Phyra82748;rank=2 scaffold_76 . exon 217062 217216 . - . ID=Phyra82748.2;Parent=Phyra82748;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_76 . CDS 217276 217308 . - 0 ID=Phyra82748;Parent=Phyra82748;rank=1 scaffold_76 . exon 217276 217308 . - . ID=Phyra82748.1;Parent=Phyra82748;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 217572 218902 . - . ID=Phyra82749;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000067;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 217572 218902 . - . ID=Phyra82749;Parent=Phyra82749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 217572 217919 . - 0 ID=Phyra82749;Parent=Phyra82749;rank=6 scaffold_76 . exon 217572 217919 . - . ID=Phyra82749.6;Parent=Phyra82749;constitutive=1;rank=6 scaffold_76 . CDS 217991 218066 . - 0 ID=Phyra82749;Parent=Phyra82749;rank=5 scaffold_76 . exon 217991 218066 . - . ID=Phyra82749.5;Parent=Phyra82749;constitutive=1;ensembl_phase=2;rank=5 scaffold_76 . CDS 218152 218233 . - 0 ID=Phyra82749;Parent=Phyra82749;rank=4 scaffold_76 . exon 218152 218233 . - . ID=Phyra82749.4;Parent=Phyra82749;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_76 . CDS 218302 218443 . - 0 ID=Phyra82749;Parent=Phyra82749;rank=3 scaffold_76 . exon 218302 218443 . - . ID=Phyra82749.3;Parent=Phyra82749;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_76 . CDS 218506 218574 . - 0 ID=Phyra82749;Parent=Phyra82749;rank=2 scaffold_76 . exon 218506 218574 . - . ID=Phyra82749.2;Parent=Phyra82749;constitutive=1;rank=2 scaffold_76 . CDS 218786 218902 . - 0 ID=Phyra82749;Parent=Phyra82749;rank=1 scaffold_76 . repeat_region 221153 221754 . ? . description=dust scaffold_76 . repeat_region 222671 222720 . ? . description=dust scaffold_76 . biological_region 223976 223977 0.999 + . logic_name=eponine scaffold_76 . biological_region 224026 224031 0.999 + . logic_name=eponine scaffold_76 . biological_region 224055 224056 0.999 - . logic_name=eponine scaffold_76 . biological_region 224075 224075 0.999 - . logic_name=eponine scaffold_76 . biological_region 224092 224094 0.999 - . logic_name=eponine scaffold_76 . biological_region 224129 224133 0.999 + . logic_name=eponine scaffold_76 . repeat_region 224540 225791 . ? . description=dust scaffold_76 . repeat_region 225792 226034 . + . description=GypsyPi-1c_I-int scaffold_76 . repeat_region 226954 228144 . ? . description=dust scaffold_76 . repeat_region 228324 229111 . + . description=GypsyPi-1c_I-int scaffold_76 . exon 218786 218902 . - . ID=Phyra82749.1;Parent=Phyra82749;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 219500 220996 . - . ID=Phyra82750;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_76000068;logic_name=jgi_phyra1 scaffold_76 ensembl transcript 219500 220996 . - . ID=Phyra82750;Parent=Phyra82750;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_76 . CDS 219500 220996 . - 0 ID=Phyra82750;Parent=Phyra82750;rank=1 scaffold_76 . exon 219500 220996 . - . ID=Phyra82750.1;Parent=Phyra82750;constitutive=1;rank=1 scaffold_76 . repeat_region 237955 238064 . - . description=Polinton-1_PI scaffold_76 . repeat_region 238141 238522 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_73 1 254763 scaffold_73 . biological_region 1545 1548 0.999 + . logic_name=eponine scaffold_73 . repeat_region 3173 3184 . ? . description=dust scaffold_73 . repeat_region 3402 3571 . ? . description=dust scaffold_73 . repeat_region 5487 7909 . ? . description=dust scaffold_73 . repeat_region 9035 9084 . ? . description=dust scaffold_73 ensembl protein_coding_gene 9165 11174 . + . ID=Phyra82501;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000001;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 9165 11174 . + . ID=Phyra82501;Parent=Phyra82501;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 9165 9719 . + 0 ID=Phyra82501;Parent=Phyra82501;rank=1 scaffold_73 . exon 9165 9719 . + . ID=Phyra82501.1;Parent=Phyra82501;constitutive=1;rank=1 scaffold_73 . CDS 9762 11174 . + 0 ID=Phyra82501;Parent=Phyra82501;rank=2 scaffold_73 . exon 9762 11174 . + . ID=Phyra82501.2;Parent=Phyra82501;constitutive=1;rank=2 scaffold_73 . repeat_region 18284 18305 . ? . description=trf scaffold_73 ensembl protein_coding_gene 11544 21564 . - . ID=Phyra82502;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000002;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 11544 21564 . - . ID=Phyra82502;Parent=Phyra82502;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 11544 16445 . - 0 ID=Phyra82502;Parent=Phyra82502;rank=6 scaffold_73 . exon 11544 16445 . - . ID=Phyra82502.6;Parent=Phyra82502;constitutive=1;rank=6 scaffold_73 . CDS 16596 16860 . - 0 ID=Phyra82502;Parent=Phyra82502;rank=5 scaffold_73 . exon 16596 16860 . - . ID=Phyra82502.5;Parent=Phyra82502;constitutive=1;ensembl_phase=2;rank=5 scaffold_73 . CDS 16893 17093 . - 0 ID=Phyra82502;Parent=Phyra82502;rank=4 scaffold_73 . exon 16893 17093 . - . ID=Phyra82502.4;Parent=Phyra82502;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_73 . CDS 17520 18772 . - 0 ID=Phyra82502;Parent=Phyra82502;rank=3 scaffold_73 . exon 17520 18772 . - . ID=Phyra82502.3;Parent=Phyra82502;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_73 . CDS 18950 21255 . - 0 ID=Phyra82502;Parent=Phyra82502;rank=2 scaffold_73 . exon 18950 21255 . - . ID=Phyra82502.2;Parent=Phyra82502;constitutive=1;ensembl_phase=1;rank=2 scaffold_73 . CDS 21306 21564 . - 0 ID=Phyra82502;Parent=Phyra82502;rank=1 scaffold_73 . biological_region 20003 20005 0.999 + . logic_name=eponine scaffold_73 . biological_region 20922 20924 0.999 - . logic_name=eponine scaffold_73 . biological_region 21023 21025 0.999 - . logic_name=eponine scaffold_73 . repeat_region 23828 23871 . ? . description=dust scaffold_73 . biological_region 23971 23972 0.999 - . logic_name=eponine scaffold_73 . biological_region 24688 24690 0.999 - . logic_name=eponine scaffold_73 . biological_region 24847 24852 0.999 + . logic_name=eponine scaffold_73 . biological_region 24980 24981 0.999 - . logic_name=eponine scaffold_73 . biological_region 25561 25565 0.999 + . logic_name=eponine scaffold_73 . biological_region 26056 26061 0.999 - . logic_name=eponine scaffold_73 . repeat_region 26112 26161 . ? . description=dust scaffold_73 . biological_region 26786 26792 0.999 + . logic_name=eponine scaffold_73 . biological_region 27283 27287 0.999 - . logic_name=eponine scaffold_73 . repeat_region 27700 32933 . ? . description=dust scaffold_73 . exon 21306 21564 . - . ID=Phyra82502.1;Parent=Phyra82502;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 ensembl protein_coding_gene 23859 27511 . + . ID=Phyra82503;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000003;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 23859 27511 . + . ID=Phyra82503;Parent=Phyra82503;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 23859 26029 . + 0 ID=Phyra82503;Parent=Phyra82503;rank=1 scaffold_73 . exon 23859 26029 . + . ID=Phyra82503.1;Parent=Phyra82503;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 . CDS 26218 27511 . + 0 ID=Phyra82503;Parent=Phyra82503;rank=2 scaffold_73 . exon 26218 27511 . + . ID=Phyra82503.2;Parent=Phyra82503;constitutive=1;ensembl_phase=2;rank=2 scaffold_73 . repeat_region 38232 38288 . ? . description=trf scaffold_73 . repeat_region 38245 38288 . ? . description=trf scaffold_73 ensembl protein_coding_gene 33025 35024 . + . ID=Phyra82504;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000004;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 33025 35024 . + . ID=Phyra82504;Parent=Phyra82504;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 33025 33859 . + 0 ID=Phyra82504;Parent=Phyra82504;rank=1 scaffold_73 . exon 33025 33859 . + . ID=Phyra82504.1;Parent=Phyra82504;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 . CDS 33916 35024 . + 0 ID=Phyra82504;Parent=Phyra82504;rank=2 scaffold_73 . exon 33916 35024 . + . ID=Phyra82504.2;Parent=Phyra82504;constitutive=1;ensembl_phase=1;rank=2 scaffold_73 . biological_region 42354 42359 0.999 + . logic_name=eponine scaffold_73 . biological_region 42849 42855 0.999 - . logic_name=eponine scaffold_73 . biological_region 43563 43568 0.999 - . logic_name=eponine scaffold_73 . biological_region 43725 43727 0.999 + . logic_name=eponine scaffold_73 . biological_region 44165 44168 0.999 + . logic_name=eponine scaffold_73 . biological_region 44443 44444 0.999 + . logic_name=eponine scaffold_73 . repeat_region 44537 44579 . ? . description=dust scaffold_73 . biological_region 46237 46242 0.999 + . logic_name=eponine scaffold_73 . biological_region 46284 46287 0.999 + . logic_name=eponine scaffold_73 . biological_region 46335 46337 0.999 - . logic_name=eponine scaffold_73 . biological_region 46349 46350 0.999 + . logic_name=eponine scaffold_73 . biological_region 46716 46720 0.999 - . logic_name=eponine scaffold_73 . biological_region 47381 47384 0.999 - . logic_name=eponine scaffold_73 . biological_region 48001 48002 0.999 + . logic_name=eponine scaffold_73 ensembl protein_coding_gene 39307 40845 . - . ID=Phyra82505;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000005;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 39307 40845 . - . ID=Phyra82505;Parent=Phyra82505;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 39307 40845 . - 0 ID=Phyra82505;Parent=Phyra82505;rank=1 scaffold_73 . exon 39307 40845 . - . ID=Phyra82505.1;Parent=Phyra82505;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 42129 44555 . - . ID=Phyra82506;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000006;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 42129 44555 . - . ID=Phyra82506;Parent=Phyra82506;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 42129 44555 . - 0 ID=Phyra82506;Parent=Phyra82506;rank=1 scaffold_73 . exon 42129 44555 . - . ID=Phyra82506.1;Parent=Phyra82506;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 46778 48344 . - . ID=Phyra82507;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000007;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 46778 48344 . - . ID=Phyra82507;Parent=Phyra82507;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 46778 47739 . - 0 ID=Phyra82507;Parent=Phyra82507;rank=2 scaffold_73 . exon 46778 47739 . - . ID=Phyra82507.2;Parent=Phyra82507;constitutive=1;ensembl_phase=1;rank=2 scaffold_73 . CDS 47807 48344 . - 0 ID=Phyra82507;Parent=Phyra82507;rank=1 scaffold_73 . exon 47807 48344 . - . ID=Phyra82507.1;Parent=Phyra82507;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 . repeat_region 49306 49341 . ? . description=trf scaffold_73 ensembl protein_coding_gene 54918 55452 . - . ID=Phyra82508;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000008;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 54918 55452 . - . ID=Phyra82508;Parent=Phyra82508;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 54918 54945 . - 0 ID=Phyra82508;Parent=Phyra82508;rank=2 scaffold_73 . exon 54918 54945 . - . ID=Phyra82508.2;Parent=Phyra82508;constitutive=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 54971 55452 . - 0 ID=Phyra82508;Parent=Phyra82508;rank=1 scaffold_73 . exon 54971 55452 . - . ID=Phyra82508.1;Parent=Phyra82508;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 . biological_region 61676 61680 0.999 + . logic_name=eponine scaffold_73 . biological_region 64546 64550 0.999 + . logic_name=eponine scaffold_73 . biological_region 65328 65330 0.999 - . logic_name=eponine scaffold_73 ensembl protein_coding_gene 58797 66210 . - . ID=Phyra82509;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000009;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 58797 66210 . - . ID=Phyra82509;Parent=Phyra82509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 58797 58810 . - 0 ID=Phyra82509;Parent=Phyra82509;rank=11 scaffold_73 . exon 58797 58810 . - . ID=Phyra82509.11;Parent=Phyra82509;constitutive=1;ensembl_phase=1;rank=11 scaffold_73 . CDS 58905 58986 . - 0 ID=Phyra82509;Parent=Phyra82509;rank=10 scaffold_73 . exon 58905 58986 . - . ID=Phyra82509.10;Parent=Phyra82509;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_73 . CDS 59052 59294 . - 0 ID=Phyra82509;Parent=Phyra82509;rank=9 scaffold_73 . exon 59052 59294 . - . ID=Phyra82509.9;Parent=Phyra82509;constitutive=1;rank=9 scaffold_73 . CDS 59366 59646 . - 0 ID=Phyra82509;Parent=Phyra82509;rank=8 scaffold_73 . exon 59366 59646 . - . ID=Phyra82509.8;Parent=Phyra82509;constitutive=1;ensembl_phase=1;rank=8 scaffold_73 . CDS 59723 59869 . - 0 ID=Phyra82509;Parent=Phyra82509;rank=7 scaffold_73 . exon 59723 59869 . - . ID=Phyra82509.7;Parent=Phyra82509;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_73 . CDS 60146 60208 . - 0 ID=Phyra82509;Parent=Phyra82509;rank=6 scaffold_73 . exon 60146 60208 . - . ID=Phyra82509.6;Parent=Phyra82509;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_73 . CDS 60315 60389 . - 0 ID=Phyra82509;Parent=Phyra82509;rank=5 scaffold_73 . exon 60315 60389 . - . ID=Phyra82509.5;Parent=Phyra82509;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_73 . CDS 60560 60713 . - 0 ID=Phyra82509;Parent=Phyra82509;rank=4 scaffold_73 . exon 60560 60713 . - . ID=Phyra82509.4;Parent=Phyra82509;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_73 . CDS 60779 61080 . - 0 ID=Phyra82509;Parent=Phyra82509;rank=3 scaffold_73 . exon 60779 61080 . - . ID=Phyra82509.3;Parent=Phyra82509;constitutive=1;ensembl_phase=1;rank=3 scaffold_73 . CDS 61155 61392 . - 0 ID=Phyra82509;Parent=Phyra82509;rank=2 scaffold_73 . exon 61155 61392 . - . ID=Phyra82509.2;Parent=Phyra82509;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_73 . CDS 61555 66210 . - 0 ID=Phyra82509;Parent=Phyra82509;rank=1 scaffold_73 . exon 61555 66210 . - . ID=Phyra82509.1;Parent=Phyra82509;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 66759 67601 . - . ID=Phyra82510;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000010;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 66759 67601 . - . ID=Phyra82510;Parent=Phyra82510;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 66759 67601 . - 0 ID=Phyra82510;Parent=Phyra82510;rank=1 scaffold_73 . exon 66759 67601 . - . ID=Phyra82510.1;Parent=Phyra82510;constitutive=1;rank=1 scaffold_73 . repeat_region 71628 73568 . ? . description=dust scaffold_73 . repeat_region 75272 76247 . ? . description=dust scaffold_73 . repeat_region 76682 76708 . ? . description=trf scaffold_73 . repeat_region 76976 76994 . ? . description=dust scaffold_73 . repeat_region 77576 77881 . + . description=GypsyPi-1c_LTR scaffold_73 . repeat_region 77882 78831 . + . description=GypsyPi-1c_I-int scaffold_73 ensembl protein_coding_gene 68603 69764 . + . ID=Phyra82511;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000011;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 68603 69764 . + . ID=Phyra82511;Parent=Phyra82511;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 68603 68758 . + 0 ID=Phyra82511;Parent=Phyra82511;rank=1 scaffold_73 . exon 68603 68758 . + . ID=Phyra82511.1;Parent=Phyra82511;constitutive=1;rank=1 scaffold_73 . CDS 68828 68896 . + 0 ID=Phyra82511;Parent=Phyra82511;rank=2 scaffold_73 . exon 68828 68896 . + . ID=Phyra82511.2;Parent=Phyra82511;constitutive=1;rank=2 scaffold_73 . CDS 68968 69481 . + 0 ID=Phyra82511;Parent=Phyra82511;rank=3 scaffold_73 . exon 68968 69481 . + . ID=Phyra82511.3;Parent=Phyra82511;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_73 . CDS 69505 69764 . + 0 ID=Phyra82511;Parent=Phyra82511;rank=4 scaffold_73 . exon 69505 69764 . + . ID=Phyra82511.4;Parent=Phyra82511;constitutive=1;ensembl_phase=1;rank=4 scaffold_73 ensembl protein_coding_gene 73626 74006 . + . ID=Phyra82512;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000012;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 73626 74006 . + . ID=Phyra82512;Parent=Phyra82512;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 73626 74006 . + 0 ID=Phyra82512;Parent=Phyra82512;rank=1 scaffold_73 . exon 73626 74006 . + . ID=Phyra82512.1;Parent=Phyra82512;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 76471 76929 . - . ID=Phyra82513;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000013;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 76471 76929 . - . ID=Phyra82513;Parent=Phyra82513;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 76471 76929 . - 0 ID=Phyra82513;Parent=Phyra82513;rank=1 scaffold_73 . exon 76471 76929 . - . ID=Phyra82513.1;Parent=Phyra82513;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 77969 78771 . + . ID=Phyra82514;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000014;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 77969 78771 . + . ID=Phyra82514;Parent=Phyra82514;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 77969 78701 . + 0 ID=Phyra82514;Parent=Phyra82514;rank=1 scaffold_73 . exon 77969 78701 . + . ID=Phyra82514.1;Parent=Phyra82514;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 . CDS 78749 78771 . + 0 ID=Phyra82514;Parent=Phyra82514;rank=2 scaffold_73 . biological_region 78821 78822 0.999 + . logic_name=eponine scaffold_73 . repeat_region 80632 81461 . - . description=Polinton-1_PI scaffold_73 . biological_region 87590 87593 0.999 - . logic_name=eponine scaffold_73 . exon 78749 78771 . + . ID=Phyra82514.2;Parent=Phyra82514;constitutive=1;ensembl_phase=1;rank=2 scaffold_73 ensembl protein_coding_gene 85410 87044 . - . ID=Phyra82515;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000015;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 85410 87044 . - . ID=Phyra82515;Parent=Phyra82515;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 85410 87044 . - 0 ID=Phyra82515;Parent=Phyra82515;rank=1 scaffold_73 . exon 85410 87044 . - . ID=Phyra82515.1;Parent=Phyra82515;constitutive=1;rank=1 scaffold_73 . repeat_region 90068 90117 . ? . description=dust scaffold_73 . repeat_region 90890 90962 . - . description=GypsyPi-1c_I-int scaffold_73 . repeat_region 91635 91684 . ? . description=dust scaffold_73 . repeat_region 91835 91891 . ? . description=trf scaffold_73 . repeat_region 91848 91891 . ? . description=trf scaffold_73 . repeat_region 92459 92652 . - . description=GypsyPi-1c_I-int scaffold_73 . repeat_region 92915 93068 . - . description=GypsyPi-1c_I-int scaffold_73 . repeat_region 93108 93319 . + . description=GypsyPi-1c_LTR scaffold_73 . repeat_region 93707 93726 . ? . description=trf scaffold_73 . repeat_region 96121 96170 . ? . description=dust scaffold_73 ensembl protein_coding_gene 88932 89777 . - . ID=Phyra82516;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000016;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 88932 89777 . - . ID=Phyra82516;Parent=Phyra82516;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 88932 89777 . - 0 ID=Phyra82516;Parent=Phyra82516;rank=1 scaffold_73 . exon 88932 89777 . - . ID=Phyra82516.1;Parent=Phyra82516;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 95304 96333 . + . ID=Phyra82517;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000017;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 95304 96333 . + . ID=Phyra82517;Parent=Phyra82517;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 95304 95375 . + 0 ID=Phyra82517;Parent=Phyra82517;rank=1 scaffold_73 . exon 95304 95375 . + . ID=Phyra82517.1;Parent=Phyra82517;constitutive=1;rank=1 scaffold_73 . CDS 95455 96099 . + 0 ID=Phyra82517;Parent=Phyra82517;rank=2 scaffold_73 . exon 95455 96099 . + . ID=Phyra82517.2;Parent=Phyra82517;constitutive=1;rank=2 scaffold_73 . CDS 96208 96333 . + 0 ID=Phyra82517;Parent=Phyra82517;rank=3 scaffold_73 . exon 96208 96333 . + . ID=Phyra82517.3;Parent=Phyra82517;constitutive=1;rank=3 scaffold_73 . biological_region 99945 99950 0.999 - . logic_name=eponine scaffold_73 . biological_region 100001 100003 0.999 + . logic_name=eponine scaffold_73 . biological_region 100035 100040 0.999 + . logic_name=eponine scaffold_73 . biological_region 100112 100114 0.999 - . logic_name=eponine scaffold_73 . biological_region 100205 100210 0.999 - . logic_name=eponine scaffold_73 . biological_region 100281 100282 0.999 + . logic_name=eponine scaffold_73 . biological_region 100488 100490 0.999 + . logic_name=eponine scaffold_73 . biological_region 100534 100534 0.999 + . logic_name=eponine scaffold_73 . biological_region 100586 100591 0.999 + . logic_name=eponine scaffold_73 . biological_region 100637 100642 0.999 - . logic_name=eponine scaffold_73 . biological_region 100691 100696 0.999 - . logic_name=eponine scaffold_73 . biological_region 100850 100853 0.999 + . logic_name=eponine scaffold_73 . biological_region 101086 101092 0.999 - . logic_name=eponine scaffold_73 . biological_region 101106 101111 0.999 + . logic_name=eponine scaffold_73 . biological_region 101144 101146 0.999 + . logic_name=eponine scaffold_73 . biological_region 101452 101458 0.999 + . logic_name=eponine scaffold_73 . biological_region 102024 102027 0.999 + . logic_name=eponine scaffold_73 . biological_region 102141 102142 0.999 - . logic_name=eponine scaffold_73 . biological_region 102168 102169 0.999 - . logic_name=eponine scaffold_73 . biological_region 102246 102247 0.999 + . logic_name=eponine scaffold_73 . biological_region 102791 102794 0.999 + . logic_name=eponine scaffold_73 . biological_region 104197 104200 0.999 + . logic_name=eponine scaffold_73 . biological_region 104687 104694 0.999 + . logic_name=eponine scaffold_73 . biological_region 105426 105427 0.999 - . logic_name=eponine scaffold_73 . biological_region 107505 107507 0.999 - . logic_name=eponine scaffold_73 ensembl protein_coding_gene 101406 101645 . - . ID=Phyra52793;biotype=protein_coding;external_name=gwEuk.73.28.1;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 101406 101645 . - . ID=Phyra52793;Parent=Phyra52793;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 101406 101645 . - 0 ID=Phyra52793;Parent=Phyra52793;rank=1 scaffold_73 . exon 101406 101645 . - . ID=Phyra52793.1;Parent=Phyra52793;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 99489 100754 . + . ID=Phyra82518;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000018;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 99489 100754 . + . ID=Phyra82518;Parent=Phyra82518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 99489 100754 . + 0 ID=Phyra82518;Parent=Phyra82518;rank=1 scaffold_73 . exon 99489 100754 . + . ID=Phyra82518.1;Parent=Phyra82518;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 101878 106483 . - . ID=Phyra82519;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000019;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 101878 106483 . - . ID=Phyra82519;Parent=Phyra82519;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 101878 101909 . - 0 ID=Phyra82519;Parent=Phyra82519;rank=6 scaffold_73 . exon 101878 101909 . - . ID=Phyra82519.6;Parent=Phyra82519;constitutive=1;ensembl_phase=1;rank=6 scaffold_73 . CDS 101951 102467 . - 0 ID=Phyra82519;Parent=Phyra82519;rank=5 scaffold_73 . exon 101951 102467 . - . ID=Phyra82519.5;Parent=Phyra82519;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_73 . CDS 102715 102924 . - 0 ID=Phyra82519;Parent=Phyra82519;rank=4 scaffold_73 . exon 102715 102924 . - . ID=Phyra82519.4;Parent=Phyra82519;constitutive=1;rank=4 scaffold_73 . CDS 103075 103634 . - 0 ID=Phyra82519;Parent=Phyra82519;rank=3 scaffold_73 . exon 103075 103634 . - . ID=Phyra82519.3;Parent=Phyra82519;constitutive=1;ensembl_phase=1;rank=3 scaffold_73 . CDS 103667 105327 . - 0 ID=Phyra82519;Parent=Phyra82519;rank=2 scaffold_73 . exon 103667 105327 . - . ID=Phyra82519.2;Parent=Phyra82519;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 105438 106483 . - 0 ID=Phyra82519;Parent=Phyra82519;rank=1 scaffold_73 . exon 105438 106483 . - . ID=Phyra82519.1;Parent=Phyra82519;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 ensembl protein_coding_gene 108767 110287 . - . ID=Phyra82520;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000020;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 108767 110287 . - . ID=Phyra82520;Parent=Phyra82520;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 108767 110204 . - 0 ID=Phyra82520;Parent=Phyra82520;rank=2 scaffold_73 . exon 108767 110204 . - . ID=Phyra82520.2;Parent=Phyra82520;constitutive=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 110271 110287 . - 0 ID=Phyra82520;Parent=Phyra82520;rank=1 scaffold_73 . exon 110271 110287 . - . ID=Phyra82520.1;Parent=Phyra82520;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 ensembl protein_coding_gene 110468 113547 . + . ID=Phyra82521;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000021;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 110468 113547 . + . ID=Phyra82521;Parent=Phyra82521;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 110468 110825 . + 0 ID=Phyra82521;Parent=Phyra82521;rank=1 scaffold_73 . exon 110468 110825 . + . ID=Phyra82521.1;Parent=Phyra82521;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 . CDS 110893 111175 . + 0 ID=Phyra82521;Parent=Phyra82521;rank=2 scaffold_73 . exon 110893 111175 . + . ID=Phyra82521.2;Parent=Phyra82521;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_73 . CDS 111475 112458 . + 0 ID=Phyra82521;Parent=Phyra82521;rank=3 scaffold_73 . exon 111475 112458 . + . ID=Phyra82521.3;Parent=Phyra82521;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_73 . CDS 112659 113547 . + 0 ID=Phyra82521;Parent=Phyra82521;rank=4 scaffold_73 . exon 112659 113547 . + . ID=Phyra82521.4;Parent=Phyra82521;constitutive=1;ensembl_phase=2;rank=4 scaffold_73 ensembl protein_coding_gene 116566 119145 . - . ID=Phyra82524;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000024;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 116566 119145 . - . ID=Phyra82524;Parent=Phyra82524;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 116566 119145 . - 0 ID=Phyra82524;Parent=Phyra82524;rank=1 scaffold_73 . exon 116566 119145 . - . ID=Phyra82524.1;Parent=Phyra82524;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 113753 115045 . - . ID=Phyra96362;biotype=protein_coding;external_name=C_scaffold_73000004;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 113753 115045 . - . ID=Phyra96362;Parent=Phyra96362;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 113753 114009 . - 0 ID=Phyra96362;Parent=Phyra96362;rank=2 scaffold_73 . exon 113753 114009 . - . ID=Phyra96362.2;Parent=Phyra96362;constitutive=1;ensembl_phase=1;rank=2 scaffold_73 . CDS 114070 115045 . - 0 ID=Phyra96362;Parent=Phyra96362;rank=1 scaffold_73 . exon 114070 115045 . - . ID=Phyra96362.1;Parent=Phyra96362;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 ensembl protein_coding_gene 115439 116351 . + . ID=Phyra96364;biotype=protein_coding;external_name=C_scaffold_73000006;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 115439 116351 . + . ID=Phyra96364;Parent=Phyra96364;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 115439 115548 . + 0 ID=Phyra96364;Parent=Phyra96364;rank=1 scaffold_73 . exon 115439 115548 . + . ID=Phyra96364.1;Parent=Phyra96364;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 . CDS 115614 116157 . + 0 ID=Phyra96364;Parent=Phyra96364;rank=2 scaffold_73 . exon 115614 116157 . + . ID=Phyra96364.2;Parent=Phyra96364;constitutive=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 116227 116303 . + 0 ID=Phyra96364;Parent=Phyra96364;rank=3 scaffold_73 . exon 116227 116303 . + . ID=Phyra96364.3;Parent=Phyra96364;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_73 . CDS 116342 116351 . + 0 ID=Phyra96364;Parent=Phyra96364;rank=4 scaffold_73 . exon 116342 116351 . + . ID=Phyra96364.4;Parent=Phyra96364;constitutive=1;ensembl_phase=2;rank=4 scaffold_73 . biological_region 119036 119037 0.999 - . logic_name=eponine scaffold_73 . biological_region 119059 119059 0.999 - . logic_name=eponine scaffold_73 . repeat_region 123627 123634 . ? . description=dust scaffold_73 . biological_region 124864 124870 0.999 - . logic_name=eponine scaffold_73 . repeat_region 124890 124897 . ? . description=dust scaffold_73 ensembl protein_coding_gene 119415 119726 . + . ID=Phyra82525;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000025;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 119415 119726 . + . ID=Phyra82525;Parent=Phyra82525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 119415 119726 . + 0 ID=Phyra82525;Parent=Phyra82525;rank=1 scaffold_73 . exon 119415 119726 . + . ID=Phyra82525.1;Parent=Phyra82525;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 119967 123298 . - . ID=Phyra82526;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000026;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 119967 123298 . - . ID=Phyra82526;Parent=Phyra82526;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 119967 122856 . - 0 ID=Phyra82526;Parent=Phyra82526;rank=3 scaffold_73 . exon 119967 122856 . - . ID=Phyra82526.3;Parent=Phyra82526;constitutive=1;ensembl_phase=2;rank=3 scaffold_73 . CDS 122941 123130 . - 0 ID=Phyra82526;Parent=Phyra82526;rank=2 scaffold_73 . exon 122941 123130 . - . ID=Phyra82526.2;Parent=Phyra82526;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_73 . CDS 123190 123298 . - 0 ID=Phyra82526;Parent=Phyra82526;rank=1 scaffold_73 . exon 123190 123298 . - . ID=Phyra82526.1;Parent=Phyra82526;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 ensembl protein_coding_gene 125219 126079 . - . ID=Phyra82527;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000027;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 125219 126079 . - . ID=Phyra82527;Parent=Phyra82527;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 125219 126079 . - 0 ID=Phyra82527;Parent=Phyra82527;rank=1 scaffold_73 . exon 125219 126079 . - . ID=Phyra82527.1;Parent=Phyra82527;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 127162 129255 . - . ID=Phyra96366;biotype=protein_coding;external_name=C_scaffold_73000008;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 127162 129255 . - . ID=Phyra96366;Parent=Phyra96366;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 127162 127950 . - 0 ID=Phyra96366;Parent=Phyra96366;rank=4 scaffold_73 . exon 127162 127950 . - . ID=Phyra96366.4;Parent=Phyra96366;constitutive=1;rank=4 scaffold_73 . CDS 128116 128281 . - 0 ID=Phyra96366;Parent=Phyra96366;rank=3 scaffold_73 . CDS 128447 128565 . - 0 ID=Phyra96366;Parent=Phyra96366;rank=2 scaffold_73 . CDS 128671 129255 . - 0 ID=Phyra96366;Parent=Phyra96366;rank=1 scaffold_73 . repeat_region 129646 129693 . ? . description=trf scaffold_73 ensembl protein_coding_gene 135538 137825 . - . ID=Phyra82529;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000029;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 135538 137825 . - . ID=Phyra82529;Parent=Phyra82529;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 135538 135918 . - 0 ID=Phyra82529;Parent=Phyra82529;rank=2 scaffold_73 . exon 135538 135918 . - . ID=Phyra82529.2;Parent=Phyra82529;constitutive=1;rank=2 scaffold_73 . CDS 135996 137825 . - 0 ID=Phyra82529;Parent=Phyra82529;rank=1 scaffold_73 . exon 135996 137825 . - . ID=Phyra82529.1;Parent=Phyra82529;constitutive=1;rank=1 scaffold_73 . exon 128116 128281 . - . ID=Phyra96366.3;Parent=Phyra96366;constitutive=1;ensembl_phase=2;rank=3 scaffold_73 . exon 128447 128565 . - . ID=Phyra96366.2;Parent=Phyra96366;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_73 . exon 128671 129255 . - . ID=Phyra96366.1;Parent=Phyra96366;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 129718 132329 . + . ID=Phyra96367;biotype=protein_coding;external_name=C_scaffold_73000009;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 129718 132329 . + . ID=Phyra96367;Parent=Phyra96367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 129718 129963 . + 0 ID=Phyra96367;Parent=Phyra96367;rank=1 scaffold_73 . exon 129718 129963 . + . ID=Phyra96367.1;Parent=Phyra96367;constitutive=1;rank=1 scaffold_73 . CDS 130054 130149 . + 0 ID=Phyra96367;Parent=Phyra96367;rank=2 scaffold_73 . exon 130054 130149 . + . ID=Phyra96367.2;Parent=Phyra96367;constitutive=1;rank=2 scaffold_73 . CDS 130221 130701 . + 0 ID=Phyra96367;Parent=Phyra96367;rank=3 scaffold_73 . exon 130221 130701 . + . ID=Phyra96367.3;Parent=Phyra96367;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_73 . CDS 130849 130971 . + 0 ID=Phyra96367;Parent=Phyra96367;rank=4 scaffold_73 . exon 130849 130971 . + . ID=Phyra96367.4;Parent=Phyra96367;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_73 . CDS 131140 131354 . + 0 ID=Phyra96367;Parent=Phyra96367;rank=5 scaffold_73 . exon 131140 131354 . + . ID=Phyra96367.5;Parent=Phyra96367;constitutive=1;ensembl_phase=1;rank=5 scaffold_73 . CDS 131445 131563 . + 0 ID=Phyra96367;Parent=Phyra96367;rank=6 scaffold_73 . exon 131445 131563 . + . ID=Phyra96367.6;Parent=Phyra96367;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_73 . CDS 131908 132301 . + 0 ID=Phyra96367;Parent=Phyra96367;rank=7 scaffold_73 . exon 131908 132301 . + . ID=Phyra96367.7;Parent=Phyra96367;constitutive=1;ensembl_phase=2;rank=7 scaffold_73 . CDS 132321 132329 . + 0 ID=Phyra96367;Parent=Phyra96367;rank=8 scaffold_73 . exon 132321 132329 . + . ID=Phyra96367.8;Parent=Phyra96367;constitutive=1;rank=8 scaffold_73 . biological_region 137823 137823 0.999 - . logic_name=eponine scaffold_73 . biological_region 138210 138211 0.999 - . logic_name=eponine scaffold_73 . biological_region 140225 140227 0.999 + . logic_name=eponine scaffold_73 . biological_region 140448 140451 0.999 + . logic_name=eponine scaffold_73 . biological_region 140857 140860 0.999 + . logic_name=eponine scaffold_73 . biological_region 140905 140909 0.999 + . logic_name=eponine scaffold_73 . biological_region 140949 140952 0.999 - . logic_name=eponine scaffold_73 . biological_region 140986 140989 0.999 - . logic_name=eponine scaffold_73 . repeat_region 142214 142395 . + . description=(CGG)n scaffold_73 . repeat_region 142308 142356 . ? . description=dust scaffold_73 . repeat_region 142389 142451 . ? . description=dust scaffold_73 . biological_region 143989 143993 0.999 + . logic_name=eponine scaffold_73 . repeat_region 145122 145349 . ? . description=dust scaffold_73 . biological_region 145702 145704 0.999 + . logic_name=eponine scaffold_73 . biological_region 145805 145809 0.999 - . logic_name=eponine scaffold_73 . biological_region 145945 145948 0.999 - . logic_name=eponine scaffold_73 ensembl protein_coding_gene 141168 142049 . + . ID=Phyra52805;biotype=protein_coding;external_name=gwEuk.73.40.1;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 141168 142049 . + . ID=Phyra52805;Parent=Phyra52805;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 141168 141342 . + 0 ID=Phyra52805;Parent=Phyra52805;rank=1 scaffold_73 . exon 141168 141342 . + . ID=Phyra52805.1;Parent=Phyra52805;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 . CDS 141410 141510 . + 0 ID=Phyra52805;Parent=Phyra52805;rank=2 scaffold_73 . exon 141410 141510 . + . ID=Phyra52805.2;Parent=Phyra52805;constitutive=1;ensembl_phase=1;rank=2 scaffold_73 . CDS 141894 142049 . + 0 ID=Phyra52805;Parent=Phyra52805;rank=3 scaffold_73 . exon 141894 142049 . + . ID=Phyra52805.3;Parent=Phyra52805;constitutive=1;rank=3 scaffold_73 ensembl protein_coding_gene 145691 147028 . + . ID=Phyra52810;biotype=protein_coding;external_name=gwEuk.73.45.1;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 145691 147028 . + . ID=Phyra52810;Parent=Phyra52810;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 145691 147028 . + 0 ID=Phyra52810;Parent=Phyra52810;rank=1 scaffold_73 . exon 145691 147028 . + . ID=Phyra52810.1;Parent=Phyra52810;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 137949 138682 . + . ID=Phyra82530;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000030;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 137949 138682 . + . ID=Phyra82530;Parent=Phyra82530;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 137949 138377 . + 0 ID=Phyra82530;Parent=Phyra82530;rank=1 scaffold_73 . exon 137949 138377 . + . ID=Phyra82530.1;Parent=Phyra82530;constitutive=1;rank=1 scaffold_73 . CDS 138617 138682 . + 0 ID=Phyra82530;Parent=Phyra82530;rank=2 scaffold_73 . exon 138617 138682 . + . ID=Phyra82530.2;Parent=Phyra82530;constitutive=1;rank=2 scaffold_73 ensembl protein_coding_gene 139388 140686 . - . ID=Phyra82531;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000031;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 139388 140686 . - . ID=Phyra82531;Parent=Phyra82531;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 139388 140686 . - 0 ID=Phyra82531;Parent=Phyra82531;rank=1 scaffold_73 . exon 139388 140686 . - . ID=Phyra82531.1;Parent=Phyra82531;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 149915 154339 . + . ID=Phyra82534;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000034;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 149915 154339 . + . ID=Phyra82534;Parent=Phyra82534;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 149915 149964 . + 0 ID=Phyra82534;Parent=Phyra82534;rank=1 scaffold_73 . exon 149915 149964 . + . ID=Phyra82534.1;Parent=Phyra82534;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 . CDS 150143 150284 . + 0 ID=Phyra82534;Parent=Phyra82534;rank=2 scaffold_73 . exon 150143 150284 . + . ID=Phyra82534.2;Parent=Phyra82534;constitutive=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 150432 150498 . + 0 ID=Phyra82534;Parent=Phyra82534;rank=3 scaffold_73 . exon 150432 150498 . + . ID=Phyra82534.3;Parent=Phyra82534;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_73 . CDS 150525 150589 . + 0 ID=Phyra82534;Parent=Phyra82534;rank=4 scaffold_73 . exon 150525 150589 . + . ID=Phyra82534.4;Parent=Phyra82534;constitutive=1;ensembl_phase=1;rank=4 scaffold_73 . CDS 150868 151229 . + 0 ID=Phyra82534;Parent=Phyra82534;rank=5 scaffold_73 . exon 150868 151229 . + . ID=Phyra82534.5;Parent=Phyra82534;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_73 . CDS 151397 151988 . + 0 ID=Phyra82534;Parent=Phyra82534;rank=6 scaffold_73 . exon 151397 151988 . + . ID=Phyra82534.6;Parent=Phyra82534;constitutive=1;ensembl_phase=2;rank=6 scaffold_73 . CDS 152044 153710 . + 0 ID=Phyra82534;Parent=Phyra82534;rank=7 scaffold_73 . exon 152044 153710 . + . ID=Phyra82534.7;Parent=Phyra82534;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_73 . CDS 153800 154053 . + 0 ID=Phyra82534;Parent=Phyra82534;rank=8 scaffold_73 . exon 153800 154053 . + . ID=Phyra82534.8;Parent=Phyra82534;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_73 . CDS 154122 154339 . + 0 ID=Phyra82534;Parent=Phyra82534;rank=9 scaffold_73 . exon 154122 154339 . + . ID=Phyra82534.9;Parent=Phyra82534;constitutive=1;ensembl_phase=1;rank=9 scaffold_73 ensembl protein_coding_gene 154420 154827 . - . ID=Phyra82535;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000035;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 154420 154827 . - . ID=Phyra82535;Parent=Phyra82535;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 154420 154827 . - 0 ID=Phyra82535;Parent=Phyra82535;rank=1 scaffold_73 . exon 154420 154827 . - . ID=Phyra82535.1;Parent=Phyra82535;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 156332 157126 . + . ID=Phyra82536;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000036;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 156332 157126 . + . ID=Phyra82536;Parent=Phyra82536;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 156332 157126 . + 0 ID=Phyra82536;Parent=Phyra82536;rank=1 scaffold_73 . exon 156332 157126 . + . ID=Phyra82536.1;Parent=Phyra82536;constitutive=1;rank=1 scaffold_73 . repeat_region 160731 160769 . ? . description=trf scaffold_73 . repeat_region 162384 162839 . ? . description=trf scaffold_73 . repeat_region 162406 162837 . ? . description=trf scaffold_73 . repeat_region 162407 162798 . ? . description=trf scaffold_73 . biological_region 162572 162575 0.999 - . logic_name=eponine scaffold_73 . biological_region 162816 162816 0.999 + . logic_name=eponine scaffold_73 . repeat_region 162834 163011 . ? . description=trf scaffold_73 . repeat_region 162839 163011 . ? . description=trf scaffold_73 . repeat_region 162839 163012 . ? . description=trf scaffold_73 . repeat_region 162890 163063 . ? . description=trf scaffold_73 . biological_region 162900 162900 0.999 - . logic_name=eponine scaffold_73 . biological_region 163005 163006 0.999 - . logic_name=eponine scaffold_73 . repeat_region 163052 163103 . ? . description=trf scaffold_73 . repeat_region 164426 164465 . ? . description=trf scaffold_73 . repeat_region 164426 164465 . ? . description=trf scaffold_73 . repeat_region 164427 164465 . ? . description=trf scaffold_73 . biological_region 164934 164938 0.999 + . logic_name=eponine scaffold_73 . biological_region 165262 165262 0.999 + . logic_name=eponine scaffold_73 . biological_region 166143 166145 0.999 - . logic_name=eponine scaffold_73 . biological_region 166430 166433 0.999 + . logic_name=eponine scaffold_73 ensembl protein_coding_gene 157432 163138 . + . ID=Phyra72027;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_73000001;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 157432 163138 . + . ID=Phyra72027;Parent=Phyra72027;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 157432 157681 . + 0 ID=Phyra72027;Parent=Phyra72027;rank=1 scaffold_73 . exon 157432 157681 . + . ID=Phyra72027.1;Parent=Phyra72027;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 . CDS 157816 162162 . + 0 ID=Phyra72027;Parent=Phyra72027;rank=2 scaffold_73 . exon 157816 162162 . + . ID=Phyra72027.2;Parent=Phyra72027;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_73 . CDS 162195 162250 . + 0 ID=Phyra72027;Parent=Phyra72027;rank=3 scaffold_73 . exon 162195 162250 . + . ID=Phyra72027.3;Parent=Phyra72027;constitutive=1;ensembl_phase=1;rank=3 scaffold_73 . CDS 162317 163138 . + 0 ID=Phyra72027;Parent=Phyra72027;rank=4 scaffold_73 . exon 162317 163138 . + . ID=Phyra72027.4;Parent=Phyra72027;constitutive=1;rank=4 scaffold_73 ensembl protein_coding_gene 163430 164629 . - . ID=Phyra82538;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000038;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 163430 164629 . - . ID=Phyra82538;Parent=Phyra82538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 163430 164629 . - 0 ID=Phyra82538;Parent=Phyra82538;rank=1 scaffold_73 . exon 163430 164629 . - . ID=Phyra82538.1;Parent=Phyra82538;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 166236 167051 . + . ID=Phyra82539;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000039;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 166236 167051 . + . ID=Phyra82539;Parent=Phyra82539;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 166236 167051 . + 0 ID=Phyra82539;Parent=Phyra82539;rank=1 scaffold_73 . exon 166236 167051 . + . ID=Phyra82539.1;Parent=Phyra82539;constitutive=1;rank=1 scaffold_73 . repeat_region 167077 167088 . ? . description=dust scaffold_73 . repeat_region 169241 169340 . ? . description=dust scaffold_73 . repeat_region 172563 179922 . ? . description=dust scaffold_73 ensembl protein_coding_gene 169339 170350 . + . ID=Phyra52818;biotype=protein_coding;external_name=gwEuk.73.53.1;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 169339 170350 . + . ID=Phyra52818;Parent=Phyra52818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 169339 169403 . + 0 ID=Phyra52818;Parent=Phyra52818;rank=1 scaffold_73 . exon 169339 169403 . + . ID=Phyra52818.1;Parent=Phyra52818;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 . CDS 169521 169868 . + 0 ID=Phyra52818;Parent=Phyra52818;rank=2 scaffold_73 . exon 169521 169868 . + . ID=Phyra52818.2;Parent=Phyra52818;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_73 . CDS 169933 170350 . + 0 ID=Phyra52818;Parent=Phyra52818;rank=3 scaffold_73 . exon 169933 170350 . + . ID=Phyra52818.3;Parent=Phyra52818;constitutive=1;ensembl_phase=2;rank=3 scaffold_73 . biological_region 185224 185227 0.999 + . logic_name=eponine scaffold_73 ensembl protein_coding_gene 179921 180706 . + . ID=Phyra52827;biotype=protein_coding;external_name=gwEuk.73.62.1;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 179921 180706 . + . ID=Phyra52827;Parent=Phyra52827;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 179921 180706 . + 0 ID=Phyra52827;Parent=Phyra52827;rank=1 scaffold_73 . exon 179921 180706 . + . ID=Phyra52827.1;Parent=Phyra52827;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 185000 188599 . + . ID=Phyra82543;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000043;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 185000 188599 . + . ID=Phyra82543;Parent=Phyra82543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 185000 188599 . + 0 ID=Phyra82543;Parent=Phyra82543;rank=1 scaffold_73 . exon 185000 188599 . + . ID=Phyra82543.1;Parent=Phyra82543;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 182062 184230 . - . ID=Phyra96371;biotype=protein_coding;external_name=C_scaffold_73000013;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 182062 184230 . - . ID=Phyra96371;Parent=Phyra96371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 182062 182082 . - 0 ID=Phyra96371;Parent=Phyra96371;rank=7 scaffold_73 . exon 182062 182082 . - . ID=Phyra96371.7;Parent=Phyra96371;constitutive=1;rank=7 scaffold_73 . CDS 182360 182745 . - 0 ID=Phyra96371;Parent=Phyra96371;rank=6 scaffold_73 . exon 182360 182745 . - . ID=Phyra96371.6;Parent=Phyra96371;constitutive=1;ensembl_phase=1;rank=6 scaffold_73 . CDS 183053 183185 . - 0 ID=Phyra96371;Parent=Phyra96371;rank=5 scaffold_73 . exon 183053 183185 . - . ID=Phyra96371.5;Parent=Phyra96371;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_73 . CDS 183473 183526 . - 0 ID=Phyra96371;Parent=Phyra96371;rank=4 scaffold_73 . exon 183473 183526 . - . ID=Phyra96371.4;Parent=Phyra96371;constitutive=1;rank=4 scaffold_73 . CDS 183608 183663 . - 0 ID=Phyra96371;Parent=Phyra96371;rank=3 scaffold_73 . exon 183608 183663 . - . ID=Phyra96371.3;Parent=Phyra96371;constitutive=1;ensembl_phase=1;rank=3 scaffold_73 . CDS 183722 183791 . - 0 ID=Phyra96371;Parent=Phyra96371;rank=2 scaffold_73 . exon 183722 183791 . - . ID=Phyra96371.2;Parent=Phyra96371;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_73 . CDS 183850 184230 . - 0 ID=Phyra96371;Parent=Phyra96371;rank=1 scaffold_73 . exon 183850 184230 . - . ID=Phyra96371.1;Parent=Phyra96371;constitutive=1;rank=1 scaffold_73 . repeat_region 191955 191994 . ? . description=trf scaffold_73 . repeat_region 193766 193773 . ? . description=dust scaffold_73 ensembl protein_coding_gene 195893 196570 . - . ID=Phyra52767;biotype=protein_coding;description=Cell 12A endoglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q30BY5];external_name=EGL12-E;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 195893 196570 . - . ID=Phyra52767;Parent=Phyra52767;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 195893 196570 . - 0 ID=Phyra52767;Parent=Phyra52767;rank=1 scaffold_73 . exon 195893 196570 . - . ID=Phyra52767.1;Parent=Phyra52767;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 190444 190731 . - . ID=Phyra52834;biotype=protein_coding;external_name=gwEuk.73.69.1;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 190444 190731 . - . ID=Phyra52834;Parent=Phyra52834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 190444 190731 . - 0 ID=Phyra52834;Parent=Phyra52834;rank=1 scaffold_73 . exon 190444 190731 . - . ID=Phyra52834.1;Parent=Phyra52834;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 191200 193684 . - . ID=Phyra82545;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000045;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 191200 193684 . - . ID=Phyra82545;Parent=Phyra82545;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 191200 193513 . - 0 ID=Phyra82545;Parent=Phyra82545;rank=2 scaffold_73 . exon 191200 193513 . - . ID=Phyra82545.2;Parent=Phyra82545;constitutive=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 193578 193684 . - 0 ID=Phyra82545;Parent=Phyra82545;rank=1 scaffold_73 . exon 193578 193684 . - . ID=Phyra82545.1;Parent=Phyra82545;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 ensembl protein_coding_gene 194225 195700 . - . ID=Phyra82546;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000046;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 194225 195700 . - . ID=Phyra82546;Parent=Phyra82546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 194225 194437 . - 0 ID=Phyra82546;Parent=Phyra82546;rank=3 scaffold_73 . exon 194225 194437 . - . ID=Phyra82546.3;Parent=Phyra82546;constitutive=1;rank=3 scaffold_73 . CDS 194501 194713 . - 0 ID=Phyra82546;Parent=Phyra82546;rank=2 scaffold_73 . exon 194501 194713 . - . ID=Phyra82546.2;Parent=Phyra82546;constitutive=1;rank=2 scaffold_73 . CDS 194780 195700 . - 0 ID=Phyra82546;Parent=Phyra82546;rank=1 scaffold_73 . exon 194780 195700 . - . ID=Phyra82546.1;Parent=Phyra82546;constitutive=1;rank=1 scaffold_73 . biological_region 200228 200229 0.999 + . logic_name=eponine scaffold_73 . biological_region 201077 201078 0.999 + . logic_name=eponine scaffold_73 . biological_region 201116 201116 0.999 - . logic_name=eponine scaffold_73 . biological_region 201164 201171 0.999 - . logic_name=eponine scaffold_73 . biological_region 201381 201389 0.999 + . logic_name=eponine scaffold_73 . biological_region 201410 201419 0.999 + . logic_name=eponine scaffold_73 . biological_region 201430 201439 0.999 - . logic_name=eponine scaffold_73 . biological_region 201458 201460 0.999 + . logic_name=eponine scaffold_73 . biological_region 201473 201478 0.999 - . logic_name=eponine scaffold_73 . biological_region 201738 201746 0.999 - . logic_name=eponine scaffold_73 . biological_region 201753 201757 0.999 + . logic_name=eponine scaffold_73 . biological_region 201804 201809 0.999 - . logic_name=eponine scaffold_73 . biological_region 201864 201867 0.999 - . logic_name=eponine scaffold_73 . biological_region 201890 201892 0.999 - . logic_name=eponine scaffold_73 . biological_region 202236 202238 0.999 - . logic_name=eponine scaffold_73 ensembl protein_coding_gene 198396 199085 . + . ID=Phyra72030;biotype=protein_coding;description=Cell 12A endoglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q30BY4];external_name=EGL12-F;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 198396 199085 . + . ID=Phyra72030;Parent=Phyra72030;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 198396 199085 . + 0 ID=Phyra72030;Parent=Phyra72030;rank=1 scaffold_73 . exon 198396 199085 . + . ID=Phyra72030.1;Parent=Phyra72030;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 199213 201855 . - . ID=Phyra82549;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000049;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 199213 201855 . - . ID=Phyra82549;Parent=Phyra82549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 199213 201855 . - 0 ID=Phyra82549;Parent=Phyra82549;rank=1 scaffold_73 . exon 199213 201855 . - . ID=Phyra82549.1;Parent=Phyra82549;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 202027 203472 . + . ID=Phyra82550;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000050;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 202027 203472 . + . ID=Phyra82550;Parent=Phyra82550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 202027 202961 . + 0 ID=Phyra82550;Parent=Phyra82550;rank=1 scaffold_73 . exon 202027 202961 . + . ID=Phyra82550.1;Parent=Phyra82550;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 . CDS 203027 203117 . + 0 ID=Phyra82550;Parent=Phyra82550;rank=2 scaffold_73 . exon 203027 203117 . + . ID=Phyra82550.2;Parent=Phyra82550;constitutive=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 203202 203226 . + 0 ID=Phyra82550;Parent=Phyra82550;rank=3 scaffold_73 . exon 203202 203226 . + . ID=Phyra82550.3;Parent=Phyra82550;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_73 . CDS 203291 203472 . + 0 ID=Phyra82550;Parent=Phyra82550;rank=4 scaffold_73 . exon 203291 203472 . + . ID=Phyra82550.4;Parent=Phyra82550;constitutive=1;ensembl_phase=1;rank=4 scaffold_73 ensembl protein_coding_gene 209835 210437 . + . ID=Phyra72031;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_73000005;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 209835 210437 . + . ID=Phyra72031;Parent=Phyra72031;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 209835 210437 . + 0 ID=Phyra72031;Parent=Phyra72031;rank=1 scaffold_73 . exon 209835 210437 . + . ID=Phyra72031.1;Parent=Phyra72031;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 206684 209411 . - . ID=Phyra82551;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000051;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 206684 209411 . - . ID=Phyra82551;Parent=Phyra82551;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 206684 206736 . - 0 ID=Phyra82551;Parent=Phyra82551;rank=7 scaffold_73 . exon 206684 206736 . - . ID=Phyra82551.7;Parent=Phyra82551;constitutive=1;ensembl_phase=1;rank=7 scaffold_73 . CDS 206816 206894 . - 0 ID=Phyra82551;Parent=Phyra82551;rank=6 scaffold_73 . exon 206816 206894 . - . ID=Phyra82551.6;Parent=Phyra82551;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_73 . CDS 206977 207087 . - 0 ID=Phyra82551;Parent=Phyra82551;rank=5 scaffold_73 . exon 206977 207087 . - . ID=Phyra82551.5;Parent=Phyra82551;constitutive=1;rank=5 scaffold_73 . CDS 207148 207374 . - 0 ID=Phyra82551;Parent=Phyra82551;rank=4 scaffold_73 . exon 207148 207374 . - . ID=Phyra82551.4;Parent=Phyra82551;constitutive=1;ensembl_phase=1;rank=4 scaffold_73 . CDS 207443 207750 . - 0 ID=Phyra82551;Parent=Phyra82551;rank=3 scaffold_73 . exon 207443 207750 . - . ID=Phyra82551.3;Parent=Phyra82551;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_73 . CDS 207868 208957 . - 0 ID=Phyra82551;Parent=Phyra82551;rank=2 scaffold_73 . exon 207868 208957 . - . ID=Phyra82551.2;Parent=Phyra82551;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_73 . CDS 209033 209411 . - 0 ID=Phyra82551;Parent=Phyra82551;rank=1 scaffold_73 . exon 209033 209411 . - . ID=Phyra82551.1;Parent=Phyra82551;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 ensembl protein_coding_gene 210589 218739 . - . ID=Phyra82553;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000053;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 210589 218739 . - . ID=Phyra82553;Parent=Phyra82553;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 210589 210682 . - 0 ID=Phyra82553;Parent=Phyra82553;rank=15 scaffold_73 . exon 210589 210682 . - . ID=Phyra82553.15;Parent=Phyra82553;constitutive=1;ensembl_phase=2;rank=15 scaffold_73 . CDS 210753 211155 . - 0 ID=Phyra82553;Parent=Phyra82553;rank=14 scaffold_73 . exon 210753 211155 . - . ID=Phyra82553.14;Parent=Phyra82553;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=14 scaffold_73 . CDS 211214 211310 . - 0 ID=Phyra82553;Parent=Phyra82553;rank=13 scaffold_73 . exon 211214 211310 . - . ID=Phyra82553.13;Parent=Phyra82553;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_73 . CDS 211390 214515 . - 0 ID=Phyra82553;Parent=Phyra82553;rank=12 scaffold_73 . exon 211390 214515 . - . ID=Phyra82553.12;Parent=Phyra82553;constitutive=1;rank=12 scaffold_73 . CDS 214885 215835 . - 0 ID=Phyra82553;Parent=Phyra82553;rank=11 scaffold_73 . exon 214885 215835 . - . ID=Phyra82553.11;Parent=Phyra82553;constitutive=1;rank=11 scaffold_73 . CDS 215908 216138 . - 0 ID=Phyra82553;Parent=Phyra82553;rank=10 scaffold_73 . CDS 216217 216273 . - 0 ID=Phyra82553;Parent=Phyra82553;rank=9 scaffold_73 . CDS 216333 216440 . - 0 ID=Phyra82553;Parent=Phyra82553;rank=8 scaffold_73 . CDS 216482 216678 . - 0 ID=Phyra82553;Parent=Phyra82553;rank=7 scaffold_73 . CDS 216935 217388 . - 0 ID=Phyra82553;Parent=Phyra82553;rank=6 scaffold_73 . CDS 217746 218046 . - 0 ID=Phyra82553;Parent=Phyra82553;rank=5 scaffold_73 . CDS 218110 218284 . - 0 ID=Phyra82553;Parent=Phyra82553;rank=4 scaffold_73 . CDS 218359 218481 . - 0 ID=Phyra82553;Parent=Phyra82553;rank=3 scaffold_73 . CDS 218564 218618 . - 0 ID=Phyra82553;Parent=Phyra82553;rank=2 scaffold_73 . CDS 218683 218739 . - 0 ID=Phyra82553;Parent=Phyra82553;rank=1 scaffold_73 . biological_region 218686 218686 0.999 + . logic_name=eponine scaffold_73 . repeat_region 221191 221240 . ? . description=dust scaffold_73 . repeat_region 221437 221445 . ? . description=dust scaffold_73 . repeat_region 222782 222898 . ? . description=trf scaffold_73 . repeat_region 222789 222896 . ? . description=trf scaffold_73 . repeat_region 222836 222895 . ? . description=trf scaffold_73 . repeat_region 223078 233388 . ? . description=dust scaffold_73 . exon 215908 216138 . - . ID=Phyra82553.10;Parent=Phyra82553;constitutive=1;rank=10 scaffold_73 . exon 216217 216273 . - . ID=Phyra82553.9;Parent=Phyra82553;constitutive=1;rank=9 scaffold_73 . exon 216333 216440 . - . ID=Phyra82553.8;Parent=Phyra82553;constitutive=1;rank=8 scaffold_73 . exon 216482 216678 . - . ID=Phyra82553.7;Parent=Phyra82553;constitutive=1;ensembl_phase=1;rank=7 scaffold_73 . exon 216935 217388 . - . ID=Phyra82553.6;Parent=Phyra82553;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_73 . exon 217746 218046 . - . ID=Phyra82553.5;Parent=Phyra82553;constitutive=1;ensembl_phase=2;rank=5 scaffold_73 . exon 218110 218284 . - . ID=Phyra82553.4;Parent=Phyra82553;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_73 . exon 218359 218481 . - . ID=Phyra82553.3;Parent=Phyra82553;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_73 . exon 218564 218618 . - . ID=Phyra82553.2;Parent=Phyra82553;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_73 . exon 218683 218739 . - . ID=Phyra82553.1;Parent=Phyra82553;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 219400 221025 . + . ID=Phyra82554;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000054;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 219400 221025 . + . ID=Phyra82554;Parent=Phyra82554;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 219400 221025 . + 0 ID=Phyra82554;Parent=Phyra82554;rank=1 scaffold_73 . exon 219400 221025 . + . ID=Phyra82554.1;Parent=Phyra82554;constitutive=1;rank=1 scaffold_73 . repeat_region 234905 237681 . ? . description=dust scaffold_73 . biological_region 238195 238199 0.999 + . logic_name=eponine scaffold_73 . repeat_region 239237 240398 . ? . description=dust scaffold_73 . repeat_region 241164 241197 . ? . description=trf scaffold_73 . biological_region 243465 243466 0.999 - . logic_name=eponine scaffold_73 . repeat_region 243609 243658 . ? . description=dust scaffold_73 . biological_region 244663 244667 0.999 - . logic_name=eponine scaffold_73 . biological_region 244848 244851 0.999 - . logic_name=eponine scaffold_73 ensembl protein_coding_gene 240729 242495 . - . ID=Phyra82555;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_73000055;logic_name=jgi_phyra1 scaffold_73 ensembl transcript 240729 242495 . - . ID=Phyra82555;Parent=Phyra82555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_73 . CDS 240729 240893 . - 0 ID=Phyra82555;Parent=Phyra82555;rank=3 scaffold_73 . exon 240729 240893 . - . ID=Phyra82555.3;Parent=Phyra82555;constitutive=1;rank=3 scaffold_73 . CDS 241099 242227 . - 0 ID=Phyra82555;Parent=Phyra82555;rank=2 scaffold_73 . exon 241099 242227 . - . ID=Phyra82555.2;Parent=Phyra82555;constitutive=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 242260 242495 . - 0 ID=Phyra82555;Parent=Phyra82555;rank=1 scaffold_73 . exon 242260 242495 . - . ID=Phyra82555.1;Parent=Phyra82555;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 . repeat_region 245252 245530 . - . description=GypsyPi-1c_I-int scaffold_73 . repeat_region 245848 246073 . - . description=GypsyPi-1c_I-int scaffold_73 . repeat_region 246367 247656 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_75 1 257998 scaffold_75 . repeat_region 255 531 . - . description=GypsyPi-1c_I-int scaffold_75 . repeat_region 500 673 . - . description=GypsyPi-1c_I-int scaffold_75 . biological_region 1146 1147 0.999 - . logic_name=eponine scaffold_75 . biological_region 1198 1203 0.999 - . logic_name=eponine scaffold_75 . repeat_region 1281 2351 . ? . description=dust scaffold_75 . repeat_region 2976 3364 . - . description=GypsyPi-1c_I-int scaffold_75 . biological_region 3447 3451 0.999 - . logic_name=eponine scaffold_75 . repeat_region 4907 4916 . ? . description=dust scaffold_75 . repeat_region 5433 5440 . ? . description=dust scaffold_75 . biological_region 6036 6038 0.999 - . logic_name=eponine scaffold_75 . repeat_region 11499 11684 . - . description=Polinton-1_PI scaffold_75 . repeat_region 15896 15978 . - . description=Polinton-1_PI scaffold_75 . repeat_region 16033 16341 . + . description=Polinton-1_PI scaffold_75 . repeat_region 17589 17900 . + . description=Polinton-1_PI scaffold_75 . repeat_region 18067 18096 . + . description=Polinton-1_PI scaffold_75 . repeat_region 19075 22448 . + . description=Polinton-1_PI scaffold_75 ensembl protein_coding_gene 16177 17457 . + . ID=Phyra72036;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_75000001;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 16177 17457 . + . ID=Phyra72036;Parent=Phyra72036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 16177 17457 . + 0 ID=Phyra72036;Parent=Phyra72036;rank=1 scaffold_75 . exon 16177 17457 . + . ID=Phyra72036.1;Parent=Phyra72036;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 11910 13622 . + . ID=Phyra82632;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000001;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 11910 13622 . + . ID=Phyra82632;Parent=Phyra82632;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 11910 13622 . + 0 ID=Phyra82632;Parent=Phyra82632;rank=1 scaffold_75 . exon 11910 13622 . + . ID=Phyra82632.1;Parent=Phyra82632;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 13972 15582 . - . ID=Phyra82633;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000002;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 13972 15582 . - . ID=Phyra82633;Parent=Phyra82633;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 13972 15582 . - 0 ID=Phyra82633;Parent=Phyra82633;rank=1 scaffold_75 . exon 13972 15582 . - . ID=Phyra82633.1;Parent=Phyra82633;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 17736 18837 . + . ID=Phyra82635;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000004;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 17736 18837 . + . ID=Phyra82635;Parent=Phyra82635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 17736 18776 . + 0 ID=Phyra82635;Parent=Phyra82635;rank=1 scaffold_75 . exon 17736 18776 . + . ID=Phyra82635.1;Parent=Phyra82635;constitutive=1;rank=1 scaffold_75 . CDS 18832 18837 . + 0 ID=Phyra82635;Parent=Phyra82635;rank=2 scaffold_75 . exon 18832 18837 . + . ID=Phyra82635.2;Parent=Phyra82635;constitutive=1;rank=2 scaffold_75 . repeat_region 22800 22809 . ? . description=dust scaffold_75 . repeat_region 24708 24715 . ? . description=dust scaffold_75 . repeat_region 26262 26311 . ? . description=dust scaffold_75 . repeat_region 26899 26906 . ? . description=dust scaffold_75 . repeat_region 29506 29823 . ? . description=dust scaffold_75 . repeat_region 30043 35286 . + . description=Polinton-1_PI scaffold_75 . repeat_region 35679 35873 . + . description=Polinton-1_PI scaffold_75 . repeat_region 36040 36908 . + . description=Polinton-1_PI scaffold_75 ensembl protein_coding_gene 33165 34883 . + . ID=Phyra82636;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000005;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 33165 34883 . + . ID=Phyra82636;Parent=Phyra82636;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 33165 34047 . + 0 ID=Phyra82636;Parent=Phyra82636;rank=1 scaffold_75 . exon 33165 34047 . + . ID=Phyra82636.1;Parent=Phyra82636;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 . CDS 34183 34240 . + 0 ID=Phyra82636;Parent=Phyra82636;rank=2 scaffold_75 . exon 34183 34240 . + . ID=Phyra82636.2;Parent=Phyra82636;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_75 . CDS 34329 34353 . + 0 ID=Phyra82636;Parent=Phyra82636;rank=3 scaffold_75 . exon 34329 34353 . + . ID=Phyra82636.3;Parent=Phyra82636;constitutive=1;ensembl_phase=2;rank=3 scaffold_75 . CDS 34482 34883 . + 0 ID=Phyra82636;Parent=Phyra82636;rank=4 scaffold_75 . exon 34482 34883 . + . ID=Phyra82636.4;Parent=Phyra82636;constitutive=1;rank=4 scaffold_75 ensembl protein_coding_gene 37152 39886 . + . ID=Phyra82637;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000006;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 37152 39886 . + . ID=Phyra82637;Parent=Phyra82637;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 37152 38666 . + 0 ID=Phyra82637;Parent=Phyra82637;rank=1 scaffold_75 . exon 37152 38666 . + . ID=Phyra82637.1;Parent=Phyra82637;constitutive=1;rank=1 scaffold_75 . CDS 38847 39662 . + 0 ID=Phyra82637;Parent=Phyra82637;rank=2 scaffold_75 . exon 38847 39662 . + . ID=Phyra82637.2;Parent=Phyra82637;constitutive=1;rank=2 scaffold_75 . CDS 39875 39886 . + 0 ID=Phyra82637;Parent=Phyra82637;rank=3 scaffold_75 . repeat_region 42672 47405 . ? . description=dust scaffold_75 . repeat_region 48622 49542 . ? . description=dust scaffold_75 . exon 39875 39886 . + . ID=Phyra82637.3;Parent=Phyra82637;constitutive=1;rank=3 scaffold_75 . biological_region 52131 52136 0.999 + . logic_name=eponine scaffold_75 . biological_region 52252 52256 0.999 + . logic_name=eponine scaffold_75 . biological_region 52255 52255 0.999 - . logic_name=eponine scaffold_75 . biological_region 54687 54689 0.999 - . logic_name=eponine scaffold_75 . biological_region 54741 54745 0.999 + . logic_name=eponine scaffold_75 . biological_region 55600 55604 0.999 + . logic_name=eponine scaffold_75 . biological_region 55724 55726 0.999 - . logic_name=eponine scaffold_75 . repeat_region 59335 59400 . ? . description=trf scaffold_75 ensembl protein_coding_gene 51076 57403 . - . ID=Phyra82638;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000007;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 51076 57403 . - . ID=Phyra82638;Parent=Phyra82638;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 51076 51216 . - 0 ID=Phyra82638;Parent=Phyra82638;rank=8 scaffold_75 . exon 51076 51216 . - . ID=Phyra82638.8;Parent=Phyra82638;constitutive=1;rank=8 scaffold_75 . CDS 51486 53164 . - 0 ID=Phyra82638;Parent=Phyra82638;rank=7 scaffold_75 . exon 51486 53164 . - . ID=Phyra82638.7;Parent=Phyra82638;constitutive=1;ensembl_phase=1;rank=7 scaffold_75 . CDS 53259 53727 . - 0 ID=Phyra82638;Parent=Phyra82638;rank=6 scaffold_75 . exon 53259 53727 . - . ID=Phyra82638.6;Parent=Phyra82638;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_75 . CDS 53851 54440 . - 0 ID=Phyra82638;Parent=Phyra82638;rank=5 scaffold_75 . exon 53851 54440 . - . ID=Phyra82638.5;Parent=Phyra82638;constitutive=1;ensembl_phase=1;rank=5 scaffold_75 . CDS 54508 55507 . - 0 ID=Phyra82638;Parent=Phyra82638;rank=4 scaffold_75 . exon 54508 55507 . - . ID=Phyra82638.4;Parent=Phyra82638;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_75 . CDS 55940 55959 . - 0 ID=Phyra82638;Parent=Phyra82638;rank=3 scaffold_75 . exon 55940 55959 . - . ID=Phyra82638.3;Parent=Phyra82638;constitutive=1;ensembl_phase=1;rank=3 scaffold_75 . CDS 56037 56050 . - 0 ID=Phyra82638;Parent=Phyra82638;rank=2 scaffold_75 . exon 56037 56050 . - . ID=Phyra82638.2;Parent=Phyra82638;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_75 . CDS 56802 57403 . - 0 ID=Phyra82638;Parent=Phyra82638;rank=1 scaffold_75 . exon 56802 57403 . - . ID=Phyra82638.1;Parent=Phyra82638;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . repeat_region 63175 63182 . ? . description=dust scaffold_75 ensembl pseudogene 67742 68652 . + . ID=Phyra52940;biotype=pseudogene;external_name=gwEuk.75.5.1;logic_name=jgi_phyra1 scaffold_75 ensembl pseudogene 67742 68652 . + . ID=Phyra52940;Parent=Phyra52940;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_75 . exon 67742 67898 . + . ID=Phyra52940.1;Parent=Phyra52940;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 . exon 68079 68652 . + . ID=Phyra52940.2;Parent=Phyra52940;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_75 ensembl protein_coding_gene 69269 69610 . + . ID=Phyra82640;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000009;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 69269 69610 . + . ID=Phyra82640;Parent=Phyra82640;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 69269 69610 . + 0 ID=Phyra82640;Parent=Phyra82640;rank=1 scaffold_75 . exon 69269 69610 . + . ID=Phyra82640.1;Parent=Phyra82640;constitutive=1;rank=1 scaffold_75 . repeat_region 70504 70525 . ? . description=trf scaffold_75 . repeat_region 70903 70933 . ? . description=trf scaffold_75 . repeat_region 70999 71018 . ? . description=trf scaffold_75 . biological_region 73406 73412 0.999 - . logic_name=eponine scaffold_75 . repeat_region 74850 74878 . ? . description=trf scaffold_75 . repeat_region 74991 75019 . ? . description=trf scaffold_75 . biological_region 76980 76986 0.999 + . logic_name=eponine scaffold_75 . biological_region 77016 77020 0.999 + . logic_name=eponine scaffold_75 . biological_region 77038 77042 0.999 + . logic_name=eponine scaffold_75 . biological_region 77073 77079 0.999 + . logic_name=eponine scaffold_75 . biological_region 77126 77130 0.999 - . logic_name=eponine scaffold_75 . biological_region 77412 77415 0.999 + . logic_name=eponine scaffold_75 . biological_region 77421 77421 0.999 - . logic_name=eponine scaffold_75 . biological_region 77621 77624 0.999 - . logic_name=eponine scaffold_75 ensembl protein_coding_gene 71228 73503 . + . ID=Phyra82641;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000010;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 71228 73503 . + . ID=Phyra82641;Parent=Phyra82641;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 71228 71659 . + 0 ID=Phyra82641;Parent=Phyra82641;rank=1 scaffold_75 . exon 71228 71659 . + . ID=Phyra82641.1;Parent=Phyra82641;constitutive=1;rank=1 scaffold_75 . CDS 72232 72326 . + 0 ID=Phyra82641;Parent=Phyra82641;rank=2 scaffold_75 . exon 72232 72326 . + . ID=Phyra82641.2;Parent=Phyra82641;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_75 . CDS 72432 73076 . + 0 ID=Phyra82641;Parent=Phyra82641;rank=3 scaffold_75 . exon 72432 73076 . + . ID=Phyra82641.3;Parent=Phyra82641;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_75 . CDS 73227 73503 . + 0 ID=Phyra82641;Parent=Phyra82641;rank=4 scaffold_75 . exon 73227 73503 . + . ID=Phyra82641.4;Parent=Phyra82641;constitutive=1;ensembl_phase=2;rank=4 scaffold_75 ensembl protein_coding_gene 74834 75346 . + . ID=Phyra82642;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000011;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 74834 75346 . + . ID=Phyra82642;Parent=Phyra82642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 74834 75346 . + 0 ID=Phyra82642;Parent=Phyra82642;rank=1 scaffold_75 . exon 74834 75346 . + . ID=Phyra82642.1;Parent=Phyra82642;constitutive=1;rank=1 scaffold_75 . repeat_region 79051 80336 . ? . description=dust scaffold_75 . repeat_region 81355 90350 . ? . description=dust scaffold_75 . repeat_region 90728 90880 . ? . description=trf scaffold_75 . repeat_region 97923 97951 . ? . description=trf scaffold_75 . repeat_region 97946 97966 . ? . description=trf scaffold_75 . repeat_region 97966 97993 . ? . description=trf scaffold_75 . repeat_region 97968 97991 . ? . description=trf scaffold_75 . repeat_region 97968 97993 . ? . description=trf scaffold_75 . repeat_region 99286 99294 . ? . description=dust scaffold_75 . repeat_region 104793 104819 . ? . description=dust scaffold_75 . repeat_region 105289 105298 . ? . description=dust scaffold_75 . repeat_region 105438 105459 . ? . description=dust scaffold_75 . biological_region 106387 106393 0.999 - . logic_name=eponine scaffold_75 . biological_region 106599 106600 0.999 - . logic_name=eponine scaffold_75 . biological_region 106806 106809 0.999 - . logic_name=eponine scaffold_75 ensembl protein_coding_gene 100646 101171 . - . ID=Phyra82643;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000012;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 100646 101171 . - . ID=Phyra82643;Parent=Phyra82643;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 100646 100686 . - 0 ID=Phyra82643;Parent=Phyra82643;rank=2 scaffold_75 . exon 100646 100686 . - . ID=Phyra82643.2;Parent=Phyra82643;constitutive=1;ensembl_phase=1;rank=2 scaffold_75 . CDS 100760 101171 . - 0 ID=Phyra82643;Parent=Phyra82643;rank=1 scaffold_75 . exon 100760 101171 . - . ID=Phyra82643.1;Parent=Phyra82643;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 ensembl protein_coding_gene 106185 107675 . + . ID=Phyra82644;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000013;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 106185 107675 . + . ID=Phyra82644;Parent=Phyra82644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 106185 107675 . + 0 ID=Phyra82644;Parent=Phyra82644;rank=1 scaffold_75 . exon 106185 107675 . + . ID=Phyra82644.1;Parent=Phyra82644;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 108037 109005 . - . ID=Phyra82645;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000014;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 108037 109005 . - . ID=Phyra82645;Parent=Phyra82645;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 108037 109005 . - 0 ID=Phyra82645;Parent=Phyra82645;rank=1 scaffold_75 . exon 108037 109005 . - . ID=Phyra82645.1;Parent=Phyra82645;constitutive=1;rank=1 scaffold_75 . repeat_region 111319 111627 . ? . description=trf scaffold_75 . repeat_region 111319 111672 . ? . description=trf scaffold_75 ensembl protein_coding_gene 110989 112281 . - . ID=Phyra82646;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000015;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 110989 112281 . - . ID=Phyra82646;Parent=Phyra82646;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 110989 112281 . - 0 ID=Phyra82646;Parent=Phyra82646;rank=1 scaffold_75 . exon 110989 112281 . - . ID=Phyra82646.1;Parent=Phyra82646;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 112976 113815 . - . ID=Phyra82647;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000016;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 112976 113815 . - . ID=Phyra82647;Parent=Phyra82647;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 112976 113815 . - 0 ID=Phyra82647;Parent=Phyra82647;rank=1 scaffold_75 . exon 112976 113815 . - . ID=Phyra82647.1;Parent=Phyra82647;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 117278 119696 . - . ID=Phyra82648;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000017;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 117278 119696 . - . ID=Phyra82648;Parent=Phyra82648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 117278 117335 . - 0 ID=Phyra82648;Parent=Phyra82648;rank=2 scaffold_75 . exon 117278 117335 . - . ID=Phyra82648.2;Parent=Phyra82648;constitutive=1;ensembl_phase=2;rank=2 scaffold_75 . CDS 117406 119696 . - 0 ID=Phyra82648;Parent=Phyra82648;rank=1 scaffold_75 . exon 117406 119696 . - . ID=Phyra82648.1;Parent=Phyra82648;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . biological_region 120476 120477 0.999 - . logic_name=eponine scaffold_75 . biological_region 120968 120969 0.999 + . logic_name=eponine scaffold_75 . biological_region 121053 121054 0.999 + . logic_name=eponine scaffold_75 . biological_region 121140 121145 0.999 - . logic_name=eponine scaffold_75 . biological_region 121400 121403 0.999 - . logic_name=eponine scaffold_75 . biological_region 122718 122721 0.999 - . logic_name=eponine scaffold_75 . biological_region 122748 122748 0.999 - . logic_name=eponine scaffold_75 . biological_region 122817 122824 0.999 - . logic_name=eponine scaffold_75 . biological_region 122874 122879 0.999 + . logic_name=eponine scaffold_75 . repeat_region 127906 127916 . ? . description=dust scaffold_75 ensembl protein_coding_gene 120349 121830 . + . ID=Phyra72037;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_75000002;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 120349 121830 . + . ID=Phyra72037;Parent=Phyra72037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 120349 121830 . + 0 ID=Phyra72037;Parent=Phyra72037;rank=1 scaffold_75 . exon 120349 121830 . + . ID=Phyra72037.1;Parent=Phyra72037;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 122078 123127 . - . ID=Phyra82650;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000019;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 122078 123127 . - . ID=Phyra82650;Parent=Phyra82650;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 122078 123127 . - 0 ID=Phyra82650;Parent=Phyra82650;rank=1 scaffold_75 . exon 122078 123127 . - . ID=Phyra82650.1;Parent=Phyra82650;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 123810 126432 . + . ID=Phyra82651;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000020;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 123810 126432 . + . ID=Phyra82651;Parent=Phyra82651;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 123810 126216 . + 0 ID=Phyra82651;Parent=Phyra82651;rank=1 scaffold_75 . exon 123810 126216 . + . ID=Phyra82651.1;Parent=Phyra82651;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 . CDS 126380 126432 . + 0 ID=Phyra82651;Parent=Phyra82651;rank=2 scaffold_75 . exon 126380 126432 . + . ID=Phyra82651.2;Parent=Phyra82651;constitutive=1;ensembl_phase=1;rank=2 scaffold_75 ensembl protein_coding_gene 135632 136300 . - . ID=Phyra52955;biotype=protein_coding;external_name=gwEuk.75.20.1;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 135632 136300 . - . ID=Phyra52955;Parent=Phyra52955;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 135632 136300 . - 0 ID=Phyra52955;Parent=Phyra52955;rank=1 scaffold_75 . exon 135632 136300 . - . ID=Phyra52955.1;Parent=Phyra52955;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 129230 130075 . - . ID=Phyra82652;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000021;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 129230 130075 . - . ID=Phyra82652;Parent=Phyra82652;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 129230 130075 . - 0 ID=Phyra82652;Parent=Phyra82652;rank=1 scaffold_75 . exon 129230 130075 . - . ID=Phyra82652.1;Parent=Phyra82652;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 130823 131900 . + . ID=Phyra82653;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000022;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 130823 131900 . + . ID=Phyra82653;Parent=Phyra82653;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 130823 130837 . + 0 ID=Phyra82653;Parent=Phyra82653;rank=1 scaffold_75 . exon 130823 130837 . + . ID=Phyra82653.1;Parent=Phyra82653;constitutive=1;rank=1 scaffold_75 . CDS 131010 131900 . + 0 ID=Phyra82653;Parent=Phyra82653;rank=2 scaffold_75 . exon 131010 131900 . + . ID=Phyra82653.2;Parent=Phyra82653;constitutive=1;rank=2 scaffold_75 ensembl protein_coding_gene 132430 135378 . + . ID=Phyra82654;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000023;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 132430 135378 . + . ID=Phyra82654;Parent=Phyra82654;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 132430 135378 . + 0 ID=Phyra82654;Parent=Phyra82654;rank=1 scaffold_75 . exon 132430 135378 . + . ID=Phyra82654.1;Parent=Phyra82654;constitutive=1;rank=1 scaffold_75 . repeat_region 137409 143090 . ? . description=dust scaffold_75 . biological_region 143976 143980 0.999 - . logic_name=eponine scaffold_75 ensembl protein_coding_gene 144518 145186 . - . ID=Phyra52960;biotype=protein_coding;external_name=gwEuk.75.25.1;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 144518 145186 . - . ID=Phyra52960;Parent=Phyra52960;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 144518 145186 . - 0 ID=Phyra52960;Parent=Phyra52960;rank=1 scaffold_75 . exon 144518 145186 . - . ID=Phyra52960.1;Parent=Phyra52960;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 143407 144273 . + . ID=Phyra82656;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000025;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 143407 144273 . + . ID=Phyra82656;Parent=Phyra82656;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 143407 144273 . + 0 ID=Phyra82656;Parent=Phyra82656;rank=1 scaffold_75 . exon 143407 144273 . + . ID=Phyra82656.1;Parent=Phyra82656;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 147866 148917 . + . ID=Phyra82658;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000027;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 147866 148917 . + . ID=Phyra82658;Parent=Phyra82658;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 147866 148272 . + 0 ID=Phyra82658;Parent=Phyra82658;rank=1 scaffold_75 . exon 147866 148272 . + . ID=Phyra82658.1;Parent=Phyra82658;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . CDS 148432 148535 . + 0 ID=Phyra82658;Parent=Phyra82658;rank=2 scaffold_75 . exon 148432 148535 . + . ID=Phyra82658.2;Parent=Phyra82658;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_75 . CDS 148574 148917 . + 0 ID=Phyra82658;Parent=Phyra82658;rank=3 scaffold_75 . exon 148574 148917 . + . ID=Phyra82658.3;Parent=Phyra82658;constitutive=1;ensembl_phase=1;rank=3 scaffold_75 . repeat_region 158358 158382 . ? . description=trf scaffold_75 . repeat_region 159878 159886 . ? . description=dust scaffold_75 . repeat_region 163780 163812 . ? . description=dust scaffold_75 . repeat_region 166266 166276 . ? . description=dust scaffold_75 . repeat_region 166622 166629 . ? . description=dust scaffold_75 . repeat_region 168401 168450 . ? . description=dust scaffold_75 ensembl protein_coding_gene 164390 165115 . + . ID=Phyra82659;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000028;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 164390 165115 . + . ID=Phyra82659;Parent=Phyra82659;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 164390 164536 . + 0 ID=Phyra82659;Parent=Phyra82659;rank=1 scaffold_75 . exon 164390 164536 . + . ID=Phyra82659.1;Parent=Phyra82659;constitutive=1;rank=1 scaffold_75 . CDS 164906 165115 . + 0 ID=Phyra82659;Parent=Phyra82659;rank=2 scaffold_75 . exon 164906 165115 . + . ID=Phyra82659.2;Parent=Phyra82659;constitutive=1;rank=2 scaffold_75 . repeat_region 170618 170884 . ? . description=trf scaffold_75 . biological_region 174117 174120 0.999 - . logic_name=eponine scaffold_75 . biological_region 174683 174686 0.999 + . logic_name=eponine scaffold_75 . biological_region 174719 174723 0.999 - . logic_name=eponine scaffold_75 . biological_region 174730 174738 0.999 + . logic_name=eponine scaffold_75 . biological_region 174802 174807 0.999 - . logic_name=eponine scaffold_75 . biological_region 174856 174864 0.999 + . logic_name=eponine scaffold_75 . biological_region 175104 175106 0.999 - . logic_name=eponine scaffold_75 . biological_region 175640 175641 0.999 - . logic_name=eponine scaffold_75 . biological_region 175677 175682 0.999 + . logic_name=eponine scaffold_75 . biological_region 175787 175789 0.999 - . logic_name=eponine scaffold_75 . biological_region 175828 175829 0.999 + . logic_name=eponine scaffold_75 . biological_region 175866 175866 0.999 - . logic_name=eponine scaffold_75 . biological_region 175920 175922 0.999 + . logic_name=eponine scaffold_75 . biological_region 177179 177180 0.999 + . logic_name=eponine scaffold_75 . biological_region 177276 177277 0.999 - . logic_name=eponine scaffold_75 ensembl protein_coding_gene 171182 172129 . - . ID=Phyra82660;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000029;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 171182 172129 . - . ID=Phyra82660;Parent=Phyra82660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 171182 172129 . - 0 ID=Phyra82660;Parent=Phyra82660;rank=1 scaffold_75 . exon 171182 172129 . - . ID=Phyra82660.1;Parent=Phyra82660;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 172480 175212 . - . ID=Phyra82661;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000030;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 172480 175212 . - . ID=Phyra82661;Parent=Phyra82661;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 172480 173343 . - 0 ID=Phyra82661;Parent=Phyra82661;rank=5 scaffold_75 . exon 172480 173343 . - . ID=Phyra82661.5;Parent=Phyra82661;constitutive=1;rank=5 scaffold_75 . CDS 173534 174259 . - 0 ID=Phyra82661;Parent=Phyra82661;rank=4 scaffold_75 . exon 173534 174259 . - . ID=Phyra82661.4;Parent=Phyra82661;constitutive=1;rank=4 scaffold_75 . CDS 174329 174541 . - 0 ID=Phyra82661;Parent=Phyra82661;rank=3 scaffold_75 . exon 174329 174541 . - . ID=Phyra82661.3;Parent=Phyra82661;constitutive=1;rank=3 scaffold_75 . CDS 174627 175108 . - 0 ID=Phyra82661;Parent=Phyra82661;rank=2 scaffold_75 . exon 174627 175108 . - . ID=Phyra82661.2;Parent=Phyra82661;constitutive=1;ensembl_phase=1;rank=2 scaffold_75 . CDS 175137 175212 . - 0 ID=Phyra82661;Parent=Phyra82661;rank=1 scaffold_75 . exon 175137 175212 . - . ID=Phyra82661.1;Parent=Phyra82661;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 ensembl protein_coding_gene 177126 178298 . + . ID=Phyra82662;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000031;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 177126 178298 . + . ID=Phyra82662;Parent=Phyra82662;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 177126 178298 . + 0 ID=Phyra82662;Parent=Phyra82662;rank=1 scaffold_75 . exon 177126 178298 . + . ID=Phyra82662.1;Parent=Phyra82662;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 178426 178998 . + . ID=Phyra96398;biotype=protein_coding;external_name=C_scaffold_75000002;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 178426 178998 . + . ID=Phyra96398;Parent=Phyra96398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 178426 178998 . + 0 ID=Phyra96398;Parent=Phyra96398;rank=1 scaffold_75 . exon 178426 178998 . + . ID=Phyra96398.1;Parent=Phyra96398;constitutive=1;rank=1 scaffold_75 . repeat_region 179612 201490 . ? . description=dust scaffold_75 ensembl protein_coding_gene 179079 179480 . - . ID=Phyra82664;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000033;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 179079 179480 . - . ID=Phyra82664;Parent=Phyra82664;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 179079 179480 . - 0 ID=Phyra82664;Parent=Phyra82664;rank=1 scaffold_75 . exon 179079 179480 . - . ID=Phyra82664.1;Parent=Phyra82664;constitutive=1;rank=1 scaffold_75 . repeat_region 179612 201490 . ? . description=dust scaffold_75 . repeat_region 202853 202980 . + . description=(CTG)n scaffold_75 . biological_region 203513 203513 0.999 + . logic_name=eponine scaffold_75 . repeat_region 204743 204773 . ? . description=trf scaffold_75 . repeat_region 205076 205119 . ? . description=trf scaffold_75 . biological_region 206274 206275 0.999 - . logic_name=eponine scaffold_75 . repeat_region 207930 208057 . + . description=(CTG)n scaffold_75 ensembl protein_coding_gene 202691 203772 . - . ID=Phyra82665;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000034;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 202691 203772 . - . ID=Phyra82665;Parent=Phyra82665;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 202691 203673 . - 0 ID=Phyra82665;Parent=Phyra82665;rank=2 scaffold_75 . exon 202691 203673 . - . ID=Phyra82665.2;Parent=Phyra82665;constitutive=1;ensembl_phase=1;rank=2 scaffold_75 . CDS 203715 203772 . - 0 ID=Phyra82665;Parent=Phyra82665;rank=1 scaffold_75 . exon 203715 203772 . - . ID=Phyra82665.1;Parent=Phyra82665;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 ensembl protein_coding_gene 204199 206886 . + . ID=Phyra82666;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000035;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 204199 206886 . + . ID=Phyra82666;Parent=Phyra82666;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 204199 205325 . + 0 ID=Phyra82666;Parent=Phyra82666;rank=1 scaffold_75 . exon 204199 205325 . + . ID=Phyra82666.1;Parent=Phyra82666;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . CDS 205635 205708 . + 0 ID=Phyra82666;Parent=Phyra82666;rank=2 scaffold_75 . exon 205635 205708 . + . ID=Phyra82666.2;Parent=Phyra82666;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_75 . CDS 205910 206886 . + 0 ID=Phyra82666;Parent=Phyra82666;rank=3 scaffold_75 . exon 205910 206886 . + . ID=Phyra82666.3;Parent=Phyra82666;constitutive=1;ensembl_phase=1;rank=3 scaffold_75 ensembl protein_coding_gene 207768 208859 . - . ID=Phyra82667;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000036;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 207768 208859 . - . ID=Phyra82667;Parent=Phyra82667;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 207768 208859 . - 0 ID=Phyra82667;Parent=Phyra82667;rank=1 scaffold_75 . exon 207768 208859 . - . ID=Phyra82667.1;Parent=Phyra82667;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 209031 210100 . + . ID=Phyra82668;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000037;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 209031 210100 . + . ID=Phyra82668;Parent=Phyra82668;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 209031 209304 . + 0 ID=Phyra82668;Parent=Phyra82668;rank=1 scaffold_75 . exon 209031 209304 . + . ID=Phyra82668.1;Parent=Phyra82668;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 . CDS 209378 209439 . + 0 ID=Phyra82668;Parent=Phyra82668;rank=2 scaffold_75 . exon 209378 209439 . + . ID=Phyra82668.2;Parent=Phyra82668;constitutive=1;ensembl_phase=1;rank=2 scaffold_75 . CDS 209510 210100 . + 0 ID=Phyra82668;Parent=Phyra82668;rank=3 scaffold_75 . exon 209510 210100 . + . ID=Phyra82668.3;Parent=Phyra82668;constitutive=1;rank=3 scaffold_75 ensembl protein_coding_gene 211272 212316 . + . ID=Phyra82670;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000039;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 211272 212316 . + . ID=Phyra82670;Parent=Phyra82670;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 211272 211607 . + 0 ID=Phyra82670;Parent=Phyra82670;rank=1 scaffold_75 . exon 211272 211607 . + . ID=Phyra82670.1;Parent=Phyra82670;constitutive=1;rank=1 scaffold_75 . CDS 211669 212316 . + 0 ID=Phyra82670;Parent=Phyra82670;rank=2 scaffold_75 . exon 211669 212316 . + . ID=Phyra82670.2;Parent=Phyra82670;constitutive=1;rank=2 scaffold_75 ensembl protein_coding_gene 214267 216547 . + . ID=Phyra82671;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000040;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 214267 216547 . + . ID=Phyra82671;Parent=Phyra82671;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 214267 214707 . + 0 ID=Phyra82671;Parent=Phyra82671;rank=1 scaffold_75 . exon 214267 214707 . + . ID=Phyra82671.1;Parent=Phyra82671;constitutive=1;rank=1 scaffold_75 . CDS 215030 215388 . + 0 ID=Phyra82671;Parent=Phyra82671;rank=2 scaffold_75 . exon 215030 215388 . + . ID=Phyra82671.2;Parent=Phyra82671;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_75 . CDS 215484 215586 . + 0 ID=Phyra82671;Parent=Phyra82671;rank=3 scaffold_75 . exon 215484 215586 . + . ID=Phyra82671.3;Parent=Phyra82671;constitutive=1;ensembl_phase=2;rank=3 scaffold_75 . CDS 215629 215742 . + 0 ID=Phyra82671;Parent=Phyra82671;rank=4 scaffold_75 . exon 215629 215742 . + . ID=Phyra82671.4;Parent=Phyra82671;constitutive=1;rank=4 scaffold_75 . CDS 215872 216497 . + 0 ID=Phyra82671;Parent=Phyra82671;rank=5 scaffold_75 . exon 215872 216497 . + . ID=Phyra82671.5;Parent=Phyra82671;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_75 . CDS 216538 216547 . + 0 ID=Phyra82671;Parent=Phyra82671;rank=6 scaffold_75 . exon 216538 216547 . + . ID=Phyra82671.6;Parent=Phyra82671;constitutive=1;ensembl_phase=2;rank=6 scaffold_75 ensembl protein_coding_gene 216775 218601 . - . ID=Phyra82672;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000041;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 216775 218601 . - . ID=Phyra82672;Parent=Phyra82672;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 216775 218429 . - 0 ID=Phyra82672;Parent=Phyra82672;rank=2 scaffold_75 . exon 216775 218429 . - . ID=Phyra82672.2;Parent=Phyra82672;constitutive=1;ensembl_phase=1;rank=2 scaffold_75 . CDS 218532 218601 . - 0 ID=Phyra82672;Parent=Phyra82672;rank=1 scaffold_75 ensembl protein_coding_gene 210272 210898 . - . ID=Phyra96402;biotype=protein_coding;external_name=C_scaffold_75000006;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 210272 210898 . - . ID=Phyra96402;Parent=Phyra96402;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 210272 210698 . - 0 ID=Phyra96402;Parent=Phyra96402;rank=2 scaffold_75 . exon 210272 210698 . - . ID=Phyra96402.2;Parent=Phyra96402;constitutive=1;ensembl_phase=2;rank=2 scaffold_75 . CDS 210762 210898 . - 0 ID=Phyra96402;Parent=Phyra96402;rank=1 scaffold_75 . exon 210762 210898 . - . ID=Phyra96402.1;Parent=Phyra96402;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . biological_region 218372 218374 0.999 - . logic_name=eponine scaffold_75 . biological_region 218407 218414 0.999 - . logic_name=eponine scaffold_75 . biological_region 219507 219511 0.999 - . logic_name=eponine scaffold_75 . biological_region 220040 220045 0.999 - . logic_name=eponine scaffold_75 . biological_region 220113 220117 0.999 - . logic_name=eponine scaffold_75 . biological_region 220566 220566 0.999 - . logic_name=eponine scaffold_75 . repeat_region 220591 220635 . ? . description=trf scaffold_75 . biological_region 220784 220786 0.999 + . logic_name=eponine scaffold_75 . biological_region 220846 220847 0.999 - . logic_name=eponine scaffold_75 . biological_region 224311 224311 0.999 - . logic_name=eponine scaffold_75 . biological_region 224670 224672 0.999 + . logic_name=eponine scaffold_75 . biological_region 225694 225701 0.999 - . logic_name=eponine scaffold_75 . exon 218532 218601 . - . ID=Phyra82672.1;Parent=Phyra82672;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 ensembl protein_coding_gene 218950 220452 . + . ID=Phyra82673;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000042;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 218950 220452 . + . ID=Phyra82673;Parent=Phyra82673;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 218950 219003 . + 0 ID=Phyra82673;Parent=Phyra82673;rank=1 scaffold_75 . exon 218950 219003 . + . ID=Phyra82673.1;Parent=Phyra82673;constitutive=1;rank=1 scaffold_75 . CDS 219097 220452 . + 0 ID=Phyra82673;Parent=Phyra82673;rank=2 scaffold_75 . exon 219097 220452 . + . ID=Phyra82673.2;Parent=Phyra82673;constitutive=1;rank=2 scaffold_75 ensembl protein_coding_gene 220710 223760 . + . ID=Phyra82674;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000043;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 220710 223760 . + . ID=Phyra82674;Parent=Phyra82674;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 220710 223760 . + 0 ID=Phyra82674;Parent=Phyra82674;rank=1 scaffold_75 . exon 220710 223760 . + . ID=Phyra82674.1;Parent=Phyra82674;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 224602 227211 . + . ID=Phyra82675;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000044;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 224602 227211 . + . ID=Phyra82675;Parent=Phyra82675;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 224602 227211 . + 0 ID=Phyra82675;Parent=Phyra82675;rank=1 scaffold_75 . exon 224602 227211 . + . ID=Phyra82675.1;Parent=Phyra82675;constitutive=1;rank=1 scaffold_75 . repeat_region 230986 231012 . ? . description=dust scaffold_75 . repeat_region 231782 247487 . ? . description=dust scaffold_75 ensembl protein_coding_gene 228344 229274 . - . ID=Phyra82676;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000045;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 228344 229274 . - . ID=Phyra82676;Parent=Phyra82676;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 228344 228486 . - 0 ID=Phyra82676;Parent=Phyra82676;rank=4 scaffold_75 . exon 228344 228486 . - . ID=Phyra82676.4;Parent=Phyra82676;constitutive=1;ensembl_phase=1;rank=4 scaffold_75 . CDS 228556 228705 . - 0 ID=Phyra82676;Parent=Phyra82676;rank=3 scaffold_75 . exon 228556 228705 . - . ID=Phyra82676.3;Parent=Phyra82676;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_75 . CDS 228773 228842 . - 0 ID=Phyra82676;Parent=Phyra82676;rank=2 scaffold_75 . exon 228773 228842 . - . ID=Phyra82676.2;Parent=Phyra82676;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_75 . CDS 228903 229274 . - 0 ID=Phyra82676;Parent=Phyra82676;rank=1 scaffold_75 . exon 228903 229274 . - . ID=Phyra82676.1;Parent=Phyra82676;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 230431 231306 . - . ID=Phyra82677;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000046;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 230431 231306 . - . ID=Phyra82677;Parent=Phyra82677;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 230431 231306 . - 0 ID=Phyra82677;Parent=Phyra82677;rank=1 scaffold_75 . exon 230431 231306 . - . ID=Phyra82677.1;Parent=Phyra82677;constitutive=1;rank=1 scaffold_75 . repeat_region 247560 247592 . ? . description=trf scaffold_75 . biological_region 247869 247873 0.999 + . logic_name=eponine scaffold_75 . repeat_region 247911 248088 . ? . description=trf scaffold_75 . biological_region 248027 248028 0.999 + . logic_name=eponine scaffold_75 ensembl protein_coding_gene 247610 248278 . + . ID=Phyra82678;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000047;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 247610 248278 . + . ID=Phyra82678;Parent=Phyra82678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 247610 248278 . + 0 ID=Phyra82678;Parent=Phyra82678;rank=1 scaffold_75 . exon 247610 248278 . + . ID=Phyra82678.1;Parent=Phyra82678;constitutive=1;rank=1 scaffold_75 . repeat_region 251654 252493 . ? . description=dust scaffold_75 ensembl protein_coding_gene 249014 250879 . - . ID=Phyra82679;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000048;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 249014 250879 . - . ID=Phyra82679;Parent=Phyra82679;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 249014 250879 . - 0 ID=Phyra82679;Parent=Phyra82679;rank=1 scaffold_75 . exon 249014 250879 . - . ID=Phyra82679.1;Parent=Phyra82679;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 252612 253583 . + . ID=Phyra82680;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000049;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 252612 253583 . + . ID=Phyra82680;Parent=Phyra82680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 252612 253583 . + 0 ID=Phyra82680;Parent=Phyra82680;rank=1 scaffold_75 . exon 252612 253583 . + . ID=Phyra82680.1;Parent=Phyra82680;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 254319 255003 . - . ID=Phyra82681;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000050;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 254319 255003 . - . ID=Phyra82681;Parent=Phyra82681;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 254319 254895 . - 0 ID=Phyra82681;Parent=Phyra82681;rank=2 scaffold_75 . exon 254319 254895 . - . ID=Phyra82681.2;Parent=Phyra82681;constitutive=1;ensembl_phase=2;rank=2 scaffold_75 . CDS 254930 255003 . - 0 ID=Phyra82681;Parent=Phyra82681;rank=1 scaffold_75 . exon 254930 255003 . - . ID=Phyra82681.1;Parent=Phyra82681;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 ensembl protein_coding_gene 256826 257437 . + . ID=Phyra82682;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_75000051;logic_name=jgi_phyra1 scaffold_75 ensembl transcript 256826 257437 . + . ID=Phyra82682;Parent=Phyra82682;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_75 . CDS 256826 257437 . + 0 ID=Phyra82682;Parent=Phyra82682;rank=1 scaffold_75 . exon 256826 257437 . + . ID=Phyra82682.1;Parent=Phyra82682;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_74 1 263106 scaffold_74 . repeat_region 670 729 . ? . description=trf scaffold_74 . repeat_region 1084 6183 . ? . description=dust scaffold_74 ensembl protein_coding_gene 8974 10608 . - . ID=Phyra82556;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000001;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 8974 10608 . - . ID=Phyra82556;Parent=Phyra82556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 8974 10608 . - 0 ID=Phyra82556;Parent=Phyra82556;rank=1 scaffold_74 . exon 8974 10608 . - . ID=Phyra82556.1;Parent=Phyra82556;constitutive=1;rank=1 scaffold_74 . biological_region 11155 11156 0.999 - . logic_name=eponine scaffold_74 ensembl protein_coding_gene 12141 13341 . - . ID=Phyra82557;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000002;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 12141 13341 . - . ID=Phyra82557;Parent=Phyra82557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 12141 12194 . - 0 ID=Phyra82557;Parent=Phyra82557;rank=2 scaffold_74 . exon 12141 12194 . - . ID=Phyra82557.2;Parent=Phyra82557;constitutive=1;rank=2 scaffold_74 . CDS 12325 13341 . - 0 ID=Phyra82557;Parent=Phyra82557;rank=1 scaffold_74 . exon 12325 13341 . - . ID=Phyra82557.1;Parent=Phyra82557;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 16997 17470 . + . ID=Phyra82558;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000003;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 16997 17470 . + . ID=Phyra82558;Parent=Phyra82558;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 16997 17470 . + 0 ID=Phyra82558;Parent=Phyra82558;rank=1 scaffold_74 . exon 16997 17470 . + . ID=Phyra82558.1;Parent=Phyra82558;constitutive=1;rank=1 scaffold_74 . repeat_region 21507 21556 . ? . description=dust scaffold_74 . repeat_region 25426 25475 . ? . description=dust scaffold_74 . repeat_region 27651 27659 . ? . description=dust scaffold_74 . repeat_region 28284 33509 . ? . description=dust scaffold_74 . biological_region 36036 36038 0.999 + . logic_name=eponine scaffold_74 . biological_region 36161 36166 0.999 - . logic_name=eponine scaffold_74 . biological_region 36547 36549 0.999 - . logic_name=eponine scaffold_74 . biological_region 36708 36711 0.999 + . logic_name=eponine scaffold_74 ensembl protein_coding_gene 35099 36516 . + . ID=Phyra82559;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000004;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 35099 36516 . + . ID=Phyra82559;Parent=Phyra82559;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 35099 36427 . + 0 ID=Phyra82559;Parent=Phyra82559;rank=1 scaffold_74 . exon 35099 36427 . + . ID=Phyra82559.1;Parent=Phyra82559;constitutive=1;rank=1 scaffold_74 . CDS 36487 36516 . + 0 ID=Phyra82559;Parent=Phyra82559;rank=2 scaffold_74 . exon 36487 36516 . + . ID=Phyra82559.2;Parent=Phyra82559;constitutive=1;rank=2 scaffold_74 . repeat_region 36953 39738 . ? . description=dust scaffold_74 . repeat_region 39747 40846 . - . description=GypsyPi-1c_I-int scaffold_74 . repeat_region 40848 41482 . ? . description=dust scaffold_74 . repeat_region 43149 43156 . ? . description=dust scaffold_74 . repeat_region 48492 48520 . ? . description=trf scaffold_74 ensembl protein_coding_gene 40283 40708 . - . ID=Phyra82560;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000005;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 40283 40708 . - . ID=Phyra82560;Parent=Phyra82560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 40283 40708 . - 0 ID=Phyra82560;Parent=Phyra82560;rank=1 scaffold_74 . exon 40283 40708 . - . ID=Phyra82560.1;Parent=Phyra82560;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 45779 49075 . - . ID=Phyra82561;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000006;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 45779 49075 . - . ID=Phyra82561;Parent=Phyra82561;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 45779 49075 . - 0 ID=Phyra82561;Parent=Phyra82561;rank=1 scaffold_74 . exon 45779 49075 . - . ID=Phyra82561.1;Parent=Phyra82561;constitutive=1;rank=1 scaffold_74 . biological_region 48733 48736 0.999 + . logic_name=eponine scaffold_74 . biological_region 48738 48748 0.999 - . logic_name=eponine scaffold_74 . biological_region 48755 48766 0.999 + . logic_name=eponine scaffold_74 . biological_region 48770 48774 0.999 - . logic_name=eponine scaffold_74 . biological_region 48793 48804 0.999 + . logic_name=eponine scaffold_74 . biological_region 48802 48816 0.999 - . logic_name=eponine scaffold_74 . biological_region 48820 48825 0.999 - . logic_name=eponine scaffold_74 . biological_region 48822 48826 0.999 + . logic_name=eponine scaffold_74 . biological_region 48851 48852 0.999 - . logic_name=eponine scaffold_74 . biological_region 48893 48896 0.999 + . logic_name=eponine scaffold_74 . biological_region 48897 48899 0.999 - . logic_name=eponine scaffold_74 . biological_region 48918 48919 0.999 - . logic_name=eponine scaffold_74 . biological_region 48938 48939 0.999 - . logic_name=eponine scaffold_74 . biological_region 54524 54526 0.999 - . logic_name=eponine scaffold_74 . biological_region 54897 54899 0.999 + . logic_name=eponine scaffold_74 . biological_region 54960 54965 0.999 - . logic_name=eponine scaffold_74 . biological_region 55018 55019 0.999 + . logic_name=eponine scaffold_74 . biological_region 55024 55033 0.999 - . logic_name=eponine scaffold_74 . biological_region 55081 55089 0.999 + . logic_name=eponine scaffold_74 . biological_region 55145 55147 0.999 - . logic_name=eponine scaffold_74 . biological_region 55879 55882 0.999 + . logic_name=eponine scaffold_74 . biological_region 56970 56972 0.999 - . logic_name=eponine scaffold_74 ensembl protein_coding_gene 51113 51853 . + . ID=Phyra82562;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000007;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 51113 51853 . + . ID=Phyra82562;Parent=Phyra82562;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 51113 51853 . + 0 ID=Phyra82562;Parent=Phyra82562;rank=1 scaffold_74 . exon 51113 51853 . + . ID=Phyra82562.1;Parent=Phyra82562;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 51972 53542 . - . ID=Phyra82563;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000008;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 51972 53542 . - . ID=Phyra82563;Parent=Phyra82563;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 51972 52030 . - 0 ID=Phyra82563;Parent=Phyra82563;rank=2 scaffold_74 . exon 51972 52030 . - . ID=Phyra82563.2;Parent=Phyra82563;constitutive=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 52054 53542 . - 0 ID=Phyra82563;Parent=Phyra82563;rank=1 scaffold_74 . exon 52054 53542 . - . ID=Phyra82563.1;Parent=Phyra82563;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 ensembl protein_coding_gene 54625 54990 . + . ID=Phyra82564;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000009;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 54625 54990 . + . ID=Phyra82564;Parent=Phyra82564;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 54625 54990 . + 0 ID=Phyra82564;Parent=Phyra82564;rank=1 scaffold_74 . exon 54625 54990 . + . ID=Phyra82564.1;Parent=Phyra82564;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 55759 61234 . - . ID=Phyra82565;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000010;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 55759 61234 . - . ID=Phyra82565;Parent=Phyra82565;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 55759 56482 . - 0 ID=Phyra82565;Parent=Phyra82565;rank=7 scaffold_74 . exon 55759 56482 . - . ID=Phyra82565.7;Parent=Phyra82565;constitutive=1;ensembl_phase=2;rank=7 scaffold_74 . CDS 56555 56676 . - 0 ID=Phyra82565;Parent=Phyra82565;rank=6 scaffold_74 . exon 56555 56676 . - . ID=Phyra82565.6;Parent=Phyra82565;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_74 . CDS 56809 57524 . - 0 ID=Phyra82565;Parent=Phyra82565;rank=5 scaffold_74 . exon 56809 57524 . - . ID=Phyra82565.5;Parent=Phyra82565;constitutive=1;ensembl_phase=1;rank=5 scaffold_74 . CDS 57585 58313 . - 0 ID=Phyra82565;Parent=Phyra82565;rank=4 scaffold_74 . exon 57585 58313 . - . ID=Phyra82565.4;Parent=Phyra82565;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_74 . CDS 58654 59145 . - 0 ID=Phyra82565;Parent=Phyra82565;rank=3 scaffold_74 . CDS 59302 59980 . - 0 ID=Phyra82565;Parent=Phyra82565;rank=2 scaffold_74 . CDS 60197 61234 . - 0 ID=Phyra82565;Parent=Phyra82565;rank=1 scaffold_74 . exon 58654 59145 . - . ID=Phyra82565.3;Parent=Phyra82565;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_74 . exon 59302 59980 . - . ID=Phyra82565.2;Parent=Phyra82565;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_74 . exon 60197 61234 . - . ID=Phyra82565.1;Parent=Phyra82565;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 62385 64367 . - . ID=Phyra82566;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000011;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 62385 64367 . - . ID=Phyra82566;Parent=Phyra82566;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 62385 64367 . - 0 ID=Phyra82566;Parent=Phyra82566;rank=1 scaffold_74 . exon 62385 64367 . - . ID=Phyra82566.1;Parent=Phyra82566;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 65553 69664 . + . ID=Phyra96373;biotype=protein_coding;external_name=C_scaffold_74000001;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 65553 69664 . + . ID=Phyra96373;Parent=Phyra96373;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 65553 65781 . + 0 ID=Phyra96373;Parent=Phyra96373;rank=1 scaffold_74 . exon 65553 65781 . + . ID=Phyra96373.1;Parent=Phyra96373;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . CDS 65863 66201 . + 0 ID=Phyra96373;Parent=Phyra96373;rank=2 scaffold_74 . exon 65863 66201 . + . ID=Phyra96373.2;Parent=Phyra96373;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 66409 66479 . + 0 ID=Phyra96373;Parent=Phyra96373;rank=3 scaffold_74 . exon 66409 66479 . + . ID=Phyra96373.3;Parent=Phyra96373;constitutive=1;ensembl_phase=1;rank=3 scaffold_74 . CDS 66561 67251 . + 0 ID=Phyra96373;Parent=Phyra96373;rank=4 scaffold_74 . exon 66561 67251 . + . ID=Phyra96373.4;Parent=Phyra96373;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_74 . CDS 67319 67456 . + 0 ID=Phyra96373;Parent=Phyra96373;rank=5 scaffold_74 . exon 67319 67456 . + . ID=Phyra96373.5;Parent=Phyra96373;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_74 . CDS 67776 67885 . + 0 ID=Phyra96373;Parent=Phyra96373;rank=6 scaffold_74 . exon 67776 67885 . + . ID=Phyra96373.6;Parent=Phyra96373;constitutive=1;ensembl_phase=1;rank=6 scaffold_74 . CDS 67953 68058 . + 0 ID=Phyra96373;Parent=Phyra96373;rank=7 scaffold_74 . exon 67953 68058 . + . ID=Phyra96373.7;Parent=Phyra96373;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_74 . CDS 68497 68817 . + 0 ID=Phyra96373;Parent=Phyra96373;rank=8 scaffold_74 . CDS 68886 69664 . + 0 ID=Phyra96373;Parent=Phyra96373;rank=9 scaffold_74 . biological_region 68587 68591 0.999 + . logic_name=eponine scaffold_74 . biological_region 68658 68660 0.999 - . logic_name=eponine scaffold_74 . biological_region 69095 69095 0.999 - . logic_name=eponine scaffold_74 . biological_region 69239 69240 0.999 - . logic_name=eponine scaffold_74 . biological_region 69260 69266 0.999 + . logic_name=eponine scaffold_74 . biological_region 70439 70444 0.999 + . logic_name=eponine scaffold_74 . biological_region 72797 72797 0.999 - . logic_name=eponine scaffold_74 . biological_region 72858 72860 0.999 + . logic_name=eponine scaffold_74 . repeat_region 73173 73311 . ? . description=dust scaffold_74 . biological_region 74245 74247 0.999 + . logic_name=eponine scaffold_74 . repeat_region 74641 74665 . ? . description=trf scaffold_74 ensembl protein_coding_gene 70229 71545 . + . ID=Phyra82570;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000015;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 70229 71545 . + . ID=Phyra82570;Parent=Phyra82570;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 70229 71545 . + 0 ID=Phyra82570;Parent=Phyra82570;rank=1 scaffold_74 . exon 70229 71545 . + . ID=Phyra82570.1;Parent=Phyra82570;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 71673 72800 . - . ID=Phyra82571;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000016;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 71673 72800 . - . ID=Phyra82571;Parent=Phyra82571;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 71673 72800 . - 0 ID=Phyra82571;Parent=Phyra82571;rank=1 scaffold_74 . exon 71673 72800 . - . ID=Phyra82571.1;Parent=Phyra82571;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 73382 74694 . + . ID=Phyra82572;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000017;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 73382 74694 . + . ID=Phyra82572;Parent=Phyra82572;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 73382 73420 . + 0 ID=Phyra82572;Parent=Phyra82572;rank=1 scaffold_74 . exon 73382 73420 . + . ID=Phyra82572.1;Parent=Phyra82572;constitutive=1;rank=1 scaffold_74 . CDS 73501 73644 . + 0 ID=Phyra82572;Parent=Phyra82572;rank=2 scaffold_74 . exon 73501 73644 . + . ID=Phyra82572.2;Parent=Phyra82572;constitutive=1;rank=2 scaffold_74 . CDS 73729 73760 . + 0 ID=Phyra82572;Parent=Phyra82572;rank=3 scaffold_74 . exon 73729 73760 . + . ID=Phyra82572.3;Parent=Phyra82572;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_74 . CDS 73834 73924 . + 0 ID=Phyra82572;Parent=Phyra82572;rank=4 scaffold_74 . exon 73834 73924 . + . ID=Phyra82572.4;Parent=Phyra82572;constitutive=1;ensembl_phase=2;rank=4 scaffold_74 . CDS 73945 74019 . + 0 ID=Phyra82572;Parent=Phyra82572;rank=5 scaffold_74 . exon 73945 74019 . + . ID=Phyra82572.5;Parent=Phyra82572;constitutive=1;rank=5 scaffold_74 . CDS 74077 74364 . + 0 ID=Phyra82572;Parent=Phyra82572;rank=6 scaffold_74 . exon 74077 74364 . + . ID=Phyra82572.6;Parent=Phyra82572;constitutive=1;rank=6 scaffold_74 . CDS 74440 74694 . + 0 ID=Phyra82572;Parent=Phyra82572;rank=7 scaffold_74 . exon 74440 74694 . + . ID=Phyra82572.7;Parent=Phyra82572;constitutive=1;rank=7 scaffold_74 ensembl protein_coding_gene 75200 76567 . + . ID=Phyra82573;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000018;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 75200 76567 . + . ID=Phyra82573;Parent=Phyra82573;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 75200 76567 . + 0 ID=Phyra82573;Parent=Phyra82573;rank=1 scaffold_74 . exon 75200 76567 . + . ID=Phyra82573.1;Parent=Phyra82573;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 76975 78276 . + . ID=Phyra82574;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000019;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 76975 78276 . + . ID=Phyra82574;Parent=Phyra82574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 76975 78276 . + 0 ID=Phyra82574;Parent=Phyra82574;rank=1 scaffold_74 . exon 76975 78276 . + . ID=Phyra82574.1;Parent=Phyra82574;constitutive=1;rank=1 scaffold_74 . exon 68497 68817 . + . ID=Phyra96373.8;Parent=Phyra96373;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_74 . exon 68886 69664 . + . ID=Phyra96373.9;Parent=Phyra96373;constitutive=1;ensembl_phase=1;rank=9 scaffold_74 ensembl protein_coding_gene 78582 80144 . + . ID=Phyra82575;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000020;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 78582 80144 . + . ID=Phyra82575;Parent=Phyra82575;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 78582 80144 . + 0 ID=Phyra82575;Parent=Phyra82575;rank=1 scaffold_74 . exon 78582 80144 . + . ID=Phyra82575.1;Parent=Phyra82575;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 80408 80977 . - . ID=Phyra82576;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000021;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 80408 80977 . - . ID=Phyra82576;Parent=Phyra82576;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 80408 80461 . - 0 ID=Phyra82576;Parent=Phyra82576;rank=3 scaffold_74 . exon 80408 80461 . - . ID=Phyra82576.3;Parent=Phyra82576;constitutive=1;rank=3 scaffold_74 . CDS 80537 80602 . - 0 ID=Phyra82576;Parent=Phyra82576;rank=2 scaffold_74 . exon 80537 80602 . - . ID=Phyra82576.2;Parent=Phyra82576;constitutive=1;rank=2 scaffold_74 . CDS 80663 80977 . - 0 ID=Phyra82576;Parent=Phyra82576;rank=1 scaffold_74 . exon 80663 80977 . - . ID=Phyra82576.1;Parent=Phyra82576;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 85478 87430 . - . ID=Phyra82577;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000022;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 85478 87430 . - . ID=Phyra82577;Parent=Phyra82577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 85478 87430 . - 0 ID=Phyra82577;Parent=Phyra82577;rank=1 scaffold_74 . exon 85478 87430 . - . ID=Phyra82577.1;Parent=Phyra82577;constitutive=1;rank=1 scaffold_74 . repeat_region 88116 88129 . ? . description=dust scaffold_74 . biological_region 96379 96382 0.999 - . logic_name=eponine scaffold_74 . biological_region 96523 96525 0.999 + . logic_name=eponine scaffold_74 ensembl protein_coding_gene 87777 89152 . + . ID=Phyra72032;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_74000001;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 87777 89152 . + . ID=Phyra72032;Parent=Phyra72032;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 87777 87905 . + 0 ID=Phyra72032;Parent=Phyra72032;rank=1 scaffold_74 . exon 87777 87905 . + . ID=Phyra72032.1;Parent=Phyra72032;constitutive=1;rank=1 scaffold_74 . CDS 87991 88071 . + 0 ID=Phyra72032;Parent=Phyra72032;rank=2 scaffold_74 . exon 87991 88071 . + . ID=Phyra72032.2;Parent=Phyra72032;constitutive=1;rank=2 scaffold_74 . CDS 88134 88764 . + 0 ID=Phyra72032;Parent=Phyra72032;rank=3 scaffold_74 . exon 88134 88764 . + . ID=Phyra72032.3;Parent=Phyra72032;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_74 . CDS 88832 88935 . + 0 ID=Phyra72032;Parent=Phyra72032;rank=4 scaffold_74 . exon 88832 88935 . + . ID=Phyra72032.4;Parent=Phyra72032;constitutive=1;ensembl_phase=1;rank=4 scaffold_74 . CDS 89018 89152 . + 0 ID=Phyra72032;Parent=Phyra72032;rank=5 scaffold_74 . exon 89018 89152 . + . ID=Phyra72032.5;Parent=Phyra72032;constitutive=1;rank=5 scaffold_74 ensembl protein_coding_gene 89426 93082 . - . ID=Phyra82579;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000024;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 89426 93082 . - . ID=Phyra82579;Parent=Phyra82579;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 89426 93082 . - 0 ID=Phyra82579;Parent=Phyra82579;rank=1 scaffold_74 . exon 89426 93082 . - . ID=Phyra82579.1;Parent=Phyra82579;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 94648 96743 . - . ID=Phyra82580;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000025;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 94648 96743 . - . ID=Phyra82580;Parent=Phyra82580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 94648 95691 . - 0 ID=Phyra82580;Parent=Phyra82580;rank=3 scaffold_74 . exon 94648 95691 . - . ID=Phyra82580.3;Parent=Phyra82580;constitutive=1;rank=3 scaffold_74 . CDS 95767 96440 . - 0 ID=Phyra82580;Parent=Phyra82580;rank=2 scaffold_74 . exon 95767 96440 . - . ID=Phyra82580.2;Parent=Phyra82580;constitutive=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 96512 96743 . - 0 ID=Phyra82580;Parent=Phyra82580;rank=1 scaffold_74 . exon 96512 96743 . - . ID=Phyra82580.1;Parent=Phyra82580;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 ensembl protein_coding_gene 96937 98206 . + . ID=Phyra82581;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000026;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 96937 98206 . + . ID=Phyra82581;Parent=Phyra82581;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 96937 98064 . + 0 ID=Phyra82581;Parent=Phyra82581;rank=1 scaffold_74 . exon 96937 98064 . + . ID=Phyra82581.1;Parent=Phyra82581;constitutive=1;rank=1 scaffold_74 . CDS 98105 98206 . + 0 ID=Phyra82581;Parent=Phyra82581;rank=2 scaffold_74 . repeat_region 102782 102841 . ? . description=trf scaffold_74 . exon 98105 98206 . + . ID=Phyra82581.2;Parent=Phyra82581;constitutive=1;rank=2 scaffold_74 ensembl protein_coding_gene 101118 103109 . + . ID=Phyra82582;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000027;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 101118 103109 . + . ID=Phyra82582;Parent=Phyra82582;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 101118 103109 . + 0 ID=Phyra82582;Parent=Phyra82582;rank=1 scaffold_74 . exon 101118 103109 . + . ID=Phyra82582.1;Parent=Phyra82582;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 103516 105375 . - . ID=Phyra82583;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000028;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 103516 105375 . - . ID=Phyra82583;Parent=Phyra82583;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 103516 105375 . - 0 ID=Phyra82583;Parent=Phyra82583;rank=1 scaffold_74 . exon 103516 105375 . - . ID=Phyra82583.1;Parent=Phyra82583;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 106546 108408 . - . ID=Phyra82584;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000029;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 106546 108408 . - . ID=Phyra82584;Parent=Phyra82584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 106546 108408 . - 0 ID=Phyra82584;Parent=Phyra82584;rank=1 scaffold_74 . exon 106546 108408 . - . ID=Phyra82584.1;Parent=Phyra82584;constitutive=1;rank=1 scaffold_74 . biological_region 108708 108710 0.999 - . logic_name=eponine scaffold_74 . repeat_region 108984 108997 . ? . description=dust scaffold_74 . biological_region 109495 109498 0.999 + . logic_name=eponine scaffold_74 . biological_region 110335 110338 0.999 + . logic_name=eponine scaffold_74 . biological_region 110641 110642 0.999 + . logic_name=eponine scaffold_74 . biological_region 111335 111339 0.999 + . logic_name=eponine scaffold_74 . biological_region 111659 111661 0.999 - . logic_name=eponine scaffold_74 . biological_region 111698 111699 0.999 + . logic_name=eponine scaffold_74 . biological_region 111867 111869 0.999 - . logic_name=eponine scaffold_74 . biological_region 111949 111954 0.999 + . logic_name=eponine scaffold_74 . biological_region 113943 113949 0.999 - . logic_name=eponine scaffold_74 . biological_region 114334 114335 0.999 - . logic_name=eponine scaffold_74 . biological_region 116277 116281 0.999 + . logic_name=eponine scaffold_74 . biological_region 116387 116389 0.999 + . logic_name=eponine scaffold_74 . biological_region 116495 116496 0.999 - . logic_name=eponine scaffold_74 . biological_region 116634 116635 0.999 + . logic_name=eponine scaffold_74 ensembl protein_coding_gene 109426 112230 . - . ID=Phyra82585;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000030;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 109426 112230 . - . ID=Phyra82585;Parent=Phyra82585;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 109426 112230 . - 0 ID=Phyra82585;Parent=Phyra82585;rank=1 scaffold_74 . exon 109426 112230 . - . ID=Phyra82585.1;Parent=Phyra82585;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 114132 114977 . + . ID=Phyra82586;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000031;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 114132 114977 . + . ID=Phyra82586;Parent=Phyra82586;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 114132 114977 . + 0 ID=Phyra82586;Parent=Phyra82586;rank=1 scaffold_74 . exon 114132 114977 . + . ID=Phyra82586.1;Parent=Phyra82586;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 115857 117952 . + . ID=Phyra82587;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000032;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 115857 117952 . + . ID=Phyra82587;Parent=Phyra82587;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 115857 115929 . + 0 ID=Phyra82587;Parent=Phyra82587;rank=1 scaffold_74 . exon 115857 115929 . + . ID=Phyra82587.1;Parent=Phyra82587;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . CDS 115955 116929 . + 0 ID=Phyra82587;Parent=Phyra82587;rank=2 scaffold_74 . exon 115955 116929 . + . ID=Phyra82587.2;Parent=Phyra82587;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 117233 117456 . + 0 ID=Phyra82587;Parent=Phyra82587;rank=3 scaffold_74 . CDS 117484 117610 . + 0 ID=Phyra82587;Parent=Phyra82587;rank=4 scaffold_74 . CDS 117948 117952 . + 0 ID=Phyra82587;Parent=Phyra82587;rank=5 scaffold_74 . repeat_region 123661 123766 . ? . description=trf scaffold_74 . repeat_region 123719 123759 . ? . description=trf scaffold_74 ensembl protein_coding_gene 124777 125334 . - . ID=Phyra52895;biotype=protein_coding;external_name=gwEuk.74.52.1;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 124777 125334 . - . ID=Phyra52895;Parent=Phyra52895;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 124777 125334 . - 0 ID=Phyra52895;Parent=Phyra52895;rank=1 scaffold_74 . exon 124777 125334 . - . ID=Phyra52895.1;Parent=Phyra52895;constitutive=1;rank=1 scaffold_74 . exon 117233 117456 . + . ID=Phyra82587.3;Parent=Phyra82587;constitutive=1;ensembl_phase=1;rank=3 scaffold_74 . exon 117484 117610 . + . ID=Phyra82587.4;Parent=Phyra82587;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_74 . exon 117948 117952 . + . ID=Phyra82587.5;Parent=Phyra82587;constitutive=1;ensembl_phase=1;rank=5 scaffold_74 ensembl protein_coding_gene 120555 122232 . - . ID=Phyra82588;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000033;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 120555 122232 . - . ID=Phyra82588;Parent=Phyra82588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 120555 120964 . - 0 ID=Phyra82588;Parent=Phyra82588;rank=6 scaffold_74 . exon 120555 120964 . - . ID=Phyra82588.6;Parent=Phyra82588;constitutive=1;ensembl_phase=1;rank=6 scaffold_74 . CDS 121036 121057 . - 0 ID=Phyra82588;Parent=Phyra82588;rank=5 scaffold_74 . exon 121036 121057 . - . ID=Phyra82588.5;Parent=Phyra82588;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_74 . CDS 121109 121321 . - 0 ID=Phyra82588;Parent=Phyra82588;rank=4 scaffold_74 . exon 121109 121321 . - . ID=Phyra82588.4;Parent=Phyra82588;constitutive=1;rank=4 scaffold_74 . CDS 121433 121578 . - 0 ID=Phyra82588;Parent=Phyra82588;rank=3 scaffold_74 . exon 121433 121578 . - . ID=Phyra82588.3;Parent=Phyra82588;constitutive=1;ensembl_phase=1;rank=3 scaffold_74 . CDS 121609 121901 . - 0 ID=Phyra82588;Parent=Phyra82588;rank=2 scaffold_74 . exon 121609 121901 . - . ID=Phyra82588.2;Parent=Phyra82588;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_74 . CDS 121967 122232 . - 0 ID=Phyra82588;Parent=Phyra82588;rank=1 scaffold_74 . exon 121967 122232 . - . ID=Phyra82588.1;Parent=Phyra82588;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_74 . repeat_region 128493 128503 . ? . description=dust scaffold_74 . repeat_region 128705 128712 . ? . description=dust scaffold_74 . biological_region 129395 129396 0.999 - . logic_name=eponine scaffold_74 . biological_region 134902 134906 0.999 + . logic_name=eponine scaffold_74 . biological_region 134927 134933 0.999 + . logic_name=eponine scaffold_74 ensembl protein_coding_gene 126993 128250 . - . ID=Phyra82589;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000034;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 126993 128250 . - . ID=Phyra82589;Parent=Phyra82589;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 126993 127010 . - 0 ID=Phyra82589;Parent=Phyra82589;rank=2 scaffold_74 . exon 126993 127010 . - . ID=Phyra82589.2;Parent=Phyra82589;constitutive=1;rank=2 scaffold_74 . CDS 127090 128250 . - 0 ID=Phyra82589;Parent=Phyra82589;rank=1 scaffold_74 . exon 127090 128250 . - . ID=Phyra82589.1;Parent=Phyra82589;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 129193 130041 . + . ID=Phyra82590;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000035;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 129193 130041 . + . ID=Phyra82590;Parent=Phyra82590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 129193 130041 . + 0 ID=Phyra82590;Parent=Phyra82590;rank=1 scaffold_74 . exon 129193 130041 . + . ID=Phyra82590.1;Parent=Phyra82590;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 132125 138847 . + . ID=Phyra82591;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000036;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 132125 138847 . + . ID=Phyra82591;Parent=Phyra82591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 132125 132998 . + 0 ID=Phyra82591;Parent=Phyra82591;rank=1 scaffold_74 . exon 132125 132998 . + . ID=Phyra82591.1;Parent=Phyra82591;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . CDS 133136 135027 . + 0 ID=Phyra82591;Parent=Phyra82591;rank=2 scaffold_74 . exon 133136 135027 . + . ID=Phyra82591.2;Parent=Phyra82591;constitutive=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 135709 136583 . + 0 ID=Phyra82591;Parent=Phyra82591;rank=3 scaffold_74 . exon 135709 136583 . + . ID=Phyra82591.3;Parent=Phyra82591;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_74 . CDS 136897 137230 . + 0 ID=Phyra82591;Parent=Phyra82591;rank=4 scaffold_74 . CDS 137383 137900 . + 0 ID=Phyra82591;Parent=Phyra82591;rank=5 scaffold_74 . CDS 137977 138847 . + 0 ID=Phyra82591;Parent=Phyra82591;rank=6 scaffold_74 . repeat_region 139113 139136 . ? . description=trf scaffold_74 . exon 136897 137230 . + . ID=Phyra82591.4;Parent=Phyra82591;constitutive=1;ensembl_phase=2;rank=4 scaffold_74 . exon 137383 137900 . + . ID=Phyra82591.5;Parent=Phyra82591;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_74 . exon 137977 138847 . + . ID=Phyra82591.6;Parent=Phyra82591;constitutive=1;ensembl_phase=2;rank=6 scaffold_74 ensembl protein_coding_gene 138976 139977 . + . ID=Phyra82592;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000037;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 138976 139977 . + . ID=Phyra82592;Parent=Phyra82592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 138976 139977 . + 0 ID=Phyra82592;Parent=Phyra82592;rank=1 scaffold_74 . exon 138976 139977 . + . ID=Phyra82592.1;Parent=Phyra82592;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 140232 141682 . - . ID=Phyra82593;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000038;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 140232 141682 . - . ID=Phyra82593;Parent=Phyra82593;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 140232 141324 . - 0 ID=Phyra82593;Parent=Phyra82593;rank=3 scaffold_74 . exon 140232 141324 . - . ID=Phyra82593.3;Parent=Phyra82593;constitutive=1;ensembl_phase=2;rank=3 scaffold_74 . CDS 141408 141486 . - 0 ID=Phyra82593;Parent=Phyra82593;rank=2 scaffold_74 . exon 141408 141486 . - . ID=Phyra82593.2;Parent=Phyra82593;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_74 . CDS 141634 141682 . - 0 ID=Phyra82593;Parent=Phyra82593;rank=1 scaffold_74 . exon 141634 141682 . - . ID=Phyra82593.1;Parent=Phyra82593;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 ensembl protein_coding_gene 145296 147038 . + . ID=Phyra82594;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000039;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 145296 147038 . + . ID=Phyra82594;Parent=Phyra82594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 145296 147038 . + 0 ID=Phyra82594;Parent=Phyra82594;rank=1 scaffold_74 . exon 145296 147038 . + . ID=Phyra82594.1;Parent=Phyra82594;constitutive=1;rank=1 scaffold_74 . biological_region 146774 146779 0.999 - . logic_name=eponine scaffold_74 . biological_region 150923 150925 0.999 - . logic_name=eponine scaffold_74 . biological_region 152100 152100 0.999 + . logic_name=eponine scaffold_74 . biological_region 152150 152155 0.999 - . logic_name=eponine scaffold_74 . repeat_region 154474 154521 . ? . description=dust scaffold_74 . repeat_region 154474 154521 . + . description=(CAG)n scaffold_74 ensembl protein_coding_gene 149886 151454 . + . ID=Phyra52913;biotype=protein_coding;external_name=gwEuk.74.70.1;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 149886 151454 . + . ID=Phyra52913;Parent=Phyra52913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 149886 151454 . + 0 ID=Phyra52913;Parent=Phyra52913;rank=1 scaffold_74 . exon 149886 151454 . + . ID=Phyra52913.1;Parent=Phyra52913;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 147302 149590 . + . ID=Phyra82595;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000040;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 147302 149590 . + . ID=Phyra82595;Parent=Phyra82595;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 147302 149590 . + 0 ID=Phyra82595;Parent=Phyra82595;rank=1 scaffold_74 . exon 147302 149590 . + . ID=Phyra82595.1;Parent=Phyra82595;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 152873 155215 . + . ID=Phyra82597;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000042;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 152873 155215 . + . ID=Phyra82597;Parent=Phyra82597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 152873 155215 . + 0 ID=Phyra82597;Parent=Phyra82597;rank=1 scaffold_74 . exon 152873 155215 . + . ID=Phyra82597.1;Parent=Phyra82597;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 155624 156377 . + . ID=Phyra82598;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000043;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 155624 156377 . + . ID=Phyra82598;Parent=Phyra82598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 155624 155752 . + 0 ID=Phyra82598;Parent=Phyra82598;rank=1 scaffold_74 . exon 155624 155752 . + . ID=Phyra82598.1;Parent=Phyra82598;constitutive=1;rank=1 scaffold_74 . CDS 155811 156377 . + 0 ID=Phyra82598;Parent=Phyra82598;rank=2 scaffold_74 . exon 155811 156377 . + . ID=Phyra82598.2;Parent=Phyra82598;constitutive=1;rank=2 scaffold_74 . repeat_region 157327 157355 . ? . description=trf scaffold_74 . repeat_region 164387 164419 . ? . description=trf scaffold_74 ensembl protein_coding_gene 156708 157157 . - . ID=Phyra82599;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000044;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 156708 157157 . - . ID=Phyra82599;Parent=Phyra82599;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 156708 157157 . - 0 ID=Phyra82599;Parent=Phyra82599;rank=1 scaffold_74 . exon 156708 157157 . - . ID=Phyra82599.1;Parent=Phyra82599;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 157290 158891 . - . ID=Phyra82600;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000045;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 157290 158891 . - . ID=Phyra82600;Parent=Phyra82600;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 157290 158891 . - 0 ID=Phyra82600;Parent=Phyra82600;rank=1 scaffold_74 . exon 157290 158891 . - . ID=Phyra82600.1;Parent=Phyra82600;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 164831 166198 . + . ID=Phyra82601;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000046;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 164831 166198 . + . ID=Phyra82601;Parent=Phyra82601;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 164831 166198 . + 0 ID=Phyra82601;Parent=Phyra82601;rank=1 scaffold_74 . exon 164831 166198 . + . ID=Phyra82601.1;Parent=Phyra82601;constitutive=1;rank=1 scaffold_74 . repeat_region 167041 167048 . ? . description=dust scaffold_74 . biological_region 171985 171986 0.999 + . logic_name=eponine scaffold_74 . biological_region 172026 172026 0.999 + . logic_name=eponine scaffold_74 ensembl protein_coding_gene 172949 173881 . + . ID=Phyra82604;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000049;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 172949 173881 . + . ID=Phyra82604;Parent=Phyra82604;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 172949 173139 . + 0 ID=Phyra82604;Parent=Phyra82604;rank=1 scaffold_74 . exon 172949 173139 . + . ID=Phyra82604.1;Parent=Phyra82604;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_74 . CDS 173203 173301 . + 0 ID=Phyra82604;Parent=Phyra82604;rank=2 scaffold_74 . exon 173203 173301 . + . ID=Phyra82604.2;Parent=Phyra82604;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_74 . CDS 173363 173495 . + 0 ID=Phyra82604;Parent=Phyra82604;rank=3 scaffold_74 . exon 173363 173495 . + . ID=Phyra82604.3;Parent=Phyra82604;constitutive=1;ensembl_phase=2;rank=3 scaffold_74 . CDS 173573 173641 . + 0 ID=Phyra82604;Parent=Phyra82604;rank=4 scaffold_74 . exon 173573 173641 . + . ID=Phyra82604.4;Parent=Phyra82604;constitutive=1;rank=4 scaffold_74 . CDS 173714 173881 . + 0 ID=Phyra82604;Parent=Phyra82604;rank=5 scaffold_74 . exon 173714 173881 . + . ID=Phyra82604.5;Parent=Phyra82604;constitutive=1;rank=5 scaffold_74 ensembl protein_coding_gene 166518 169834 . - . ID=Phyra96378;biotype=protein_coding;external_name=C_scaffold_74000006;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 166518 169834 . - . ID=Phyra96378;Parent=Phyra96378;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 166518 166666 . - 0 ID=Phyra96378;Parent=Phyra96378;rank=10 scaffold_74 . exon 166518 166666 . - . ID=Phyra96378.10;Parent=Phyra96378;constitutive=1;ensembl_phase=1;rank=10 scaffold_74 . CDS 166737 166851 . - 0 ID=Phyra96378;Parent=Phyra96378;rank=9 scaffold_74 . exon 166737 166851 . - . ID=Phyra96378.9;Parent=Phyra96378;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_74 . CDS 166913 167024 . - 0 ID=Phyra96378;Parent=Phyra96378;rank=8 scaffold_74 . exon 166913 167024 . - . ID=Phyra96378.8;Parent=Phyra96378;constitutive=1;ensembl_phase=2;rank=8 scaffold_74 . CDS 167093 167494 . - 0 ID=Phyra96378;Parent=Phyra96378;rank=7 scaffold_74 . exon 167093 167494 . - . ID=Phyra96378.7;Parent=Phyra96378;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_74 . CDS 167531 167614 . - 0 ID=Phyra96378;Parent=Phyra96378;rank=6 scaffold_74 . exon 167531 167614 . - . ID=Phyra96378.6;Parent=Phyra96378;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_74 . CDS 167742 168058 . - 0 ID=Phyra96378;Parent=Phyra96378;rank=5 scaffold_74 . exon 167742 168058 . - . ID=Phyra96378.5;Parent=Phyra96378;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_74 . CDS 168128 168553 . - 0 ID=Phyra96378;Parent=Phyra96378;rank=4 scaffold_74 . exon 168128 168553 . - . ID=Phyra96378.4;Parent=Phyra96378;constitutive=1;rank=4 scaffold_74 . CDS 168953 169062 . - 0 ID=Phyra96378;Parent=Phyra96378;rank=3 scaffold_74 . exon 168953 169062 . - . ID=Phyra96378.3;Parent=Phyra96378;constitutive=1;ensembl_phase=1;rank=3 scaffold_74 . CDS 169222 169308 . - 0 ID=Phyra96378;Parent=Phyra96378;rank=2 scaffold_74 . exon 169222 169308 . - . ID=Phyra96378.2;Parent=Phyra96378;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 169462 169834 . - 0 ID=Phyra96378;Parent=Phyra96378;rank=1 scaffold_74 . exon 169462 169834 . - . ID=Phyra96378.1;Parent=Phyra96378;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . repeat_region 180127 180155 . ? . description=trf scaffold_74 . repeat_region 180130 180158 . ? . description=trf scaffold_74 ensembl protein_coding_gene 175534 176079 . + . ID=Phyra82605;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000050;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 175534 176079 . + . ID=Phyra82605;Parent=Phyra82605;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 175534 176079 . + 0 ID=Phyra82605;Parent=Phyra82605;rank=1 scaffold_74 . exon 175534 176079 . + . ID=Phyra82605.1;Parent=Phyra82605;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 176558 178303 . + . ID=Phyra82606;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000051;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 176558 178303 . + . ID=Phyra82606;Parent=Phyra82606;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 176558 178303 . + 0 ID=Phyra82606;Parent=Phyra82606;rank=1 scaffold_74 . exon 176558 178303 . + . ID=Phyra82606.1;Parent=Phyra82606;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 178647 185241 . - . ID=Phyra82607;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000052;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 178647 185241 . - . ID=Phyra82607;Parent=Phyra82607;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 178647 178807 . - 0 ID=Phyra82607;Parent=Phyra82607;rank=12 scaffold_74 . exon 178647 178807 . - . ID=Phyra82607.12;Parent=Phyra82607;constitutive=1;ensembl_phase=1;rank=12 scaffold_74 . CDS 178880 181698 . - 0 ID=Phyra82607;Parent=Phyra82607;rank=11 scaffold_74 . exon 178880 181698 . - . ID=Phyra82607.11;Parent=Phyra82607;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_74 . CDS 181793 182982 . - 0 ID=Phyra82607;Parent=Phyra82607;rank=10 scaffold_74 . exon 181793 182982 . - . ID=Phyra82607.10;Parent=Phyra82607;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_74 . CDS 183046 183148 . - 0 ID=Phyra82607;Parent=Phyra82607;rank=9 scaffold_74 . exon 183046 183148 . - . ID=Phyra82607.9;Parent=Phyra82607;constitutive=1;ensembl_phase=2;rank=9 scaffold_74 . CDS 183429 183562 . - 0 ID=Phyra82607;Parent=Phyra82607;rank=8 scaffold_74 . exon 183429 183562 . - . ID=Phyra82607.8;Parent=Phyra82607;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_74 . CDS 183677 183790 . - 0 ID=Phyra82607;Parent=Phyra82607;rank=7 scaffold_74 . exon 183677 183790 . - . ID=Phyra82607.7;Parent=Phyra82607;constitutive=1;rank=7 scaffold_74 . CDS 183869 183997 . - 0 ID=Phyra82607;Parent=Phyra82607;rank=6 scaffold_74 . exon 183869 183997 . - . ID=Phyra82607.6;Parent=Phyra82607;constitutive=1;rank=6 scaffold_74 . CDS 184037 184132 . - 0 ID=Phyra82607;Parent=Phyra82607;rank=5 scaffold_74 . exon 184037 184132 . - . ID=Phyra82607.5;Parent=Phyra82607;constitutive=1;rank=5 scaffold_74 . CDS 184199 184328 . - 0 ID=Phyra82607;Parent=Phyra82607;rank=4 scaffold_74 . exon 184199 184328 . - . ID=Phyra82607.4;Parent=Phyra82607;constitutive=1;ensembl_phase=2;rank=4 scaffold_74 . CDS 184392 184585 . - 0 ID=Phyra82607;Parent=Phyra82607;rank=3 scaffold_74 . exon 184392 184585 . - . ID=Phyra82607.3;Parent=Phyra82607;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_74 . CDS 184674 184780 . - 0 ID=Phyra82607;Parent=Phyra82607;rank=2 scaffold_74 . exon 184674 184780 . - . ID=Phyra82607.2;Parent=Phyra82607;constitutive=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 184854 185241 . - 0 ID=Phyra82607;Parent=Phyra82607;rank=1 scaffold_74 . exon 184854 185241 . - . ID=Phyra82607.1;Parent=Phyra82607;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . repeat_region 187177 187184 . ? . description=dust scaffold_74 . repeat_region 190200 190230 . ? . description=dust scaffold_74 . biological_region 190855 190856 0.999 + . logic_name=eponine scaffold_74 . biological_region 191162 191166 0.999 - . logic_name=eponine scaffold_74 . biological_region 194461 194463 0.999 + . logic_name=eponine scaffold_74 ensembl protein_coding_gene 185409 186074 . - . ID=Phyra82608;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000053;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 185409 186074 . - . ID=Phyra82608;Parent=Phyra82608;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 185409 186074 . - 0 ID=Phyra82608;Parent=Phyra82608;rank=1 scaffold_74 . exon 185409 186074 . - . ID=Phyra82608.1;Parent=Phyra82608;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 186345 188548 . + . ID=Phyra82609;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000054;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 186345 188548 . + . ID=Phyra82609;Parent=Phyra82609;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 186345 186356 . + 0 ID=Phyra82609;Parent=Phyra82609;rank=1 scaffold_74 . exon 186345 186356 . + . ID=Phyra82609.1;Parent=Phyra82609;constitutive=1;rank=1 scaffold_74 . CDS 186418 186482 . + 0 ID=Phyra82609;Parent=Phyra82609;rank=2 scaffold_74 . exon 186418 186482 . + . ID=Phyra82609.2;Parent=Phyra82609;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_74 . CDS 186545 186625 . + 0 ID=Phyra82609;Parent=Phyra82609;rank=3 scaffold_74 . exon 186545 186625 . + . ID=Phyra82609.3;Parent=Phyra82609;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_74 . CDS 186696 186844 . + 0 ID=Phyra82609;Parent=Phyra82609;rank=4 scaffold_74 . exon 186696 186844 . + . ID=Phyra82609.4;Parent=Phyra82609;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_74 . CDS 186915 187126 . + 0 ID=Phyra82609;Parent=Phyra82609;rank=5 scaffold_74 . exon 186915 187126 . + . ID=Phyra82609.5;Parent=Phyra82609;constitutive=1;ensembl_phase=1;rank=5 scaffold_74 . CDS 187199 187402 . + 0 ID=Phyra82609;Parent=Phyra82609;rank=6 scaffold_74 . exon 187199 187402 . + . ID=Phyra82609.6;Parent=Phyra82609;constitutive=1;rank=6 scaffold_74 . CDS 187466 187738 . + 0 ID=Phyra82609;Parent=Phyra82609;rank=7 scaffold_74 . exon 187466 187738 . + . ID=Phyra82609.7;Parent=Phyra82609;constitutive=1;rank=7 scaffold_74 . CDS 188074 188172 . + 0 ID=Phyra82609;Parent=Phyra82609;rank=8 scaffold_74 . exon 188074 188172 . + . ID=Phyra82609.8;Parent=Phyra82609;constitutive=1;rank=8 scaffold_74 . CDS 188235 188359 . + 0 ID=Phyra82609;Parent=Phyra82609;rank=9 scaffold_74 . exon 188235 188359 . + . ID=Phyra82609.9;Parent=Phyra82609;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_74 . CDS 188422 188548 . + 0 ID=Phyra82609;Parent=Phyra82609;rank=10 scaffold_74 . exon 188422 188548 . + . ID=Phyra82609.10;Parent=Phyra82609;constitutive=1;ensembl_phase=2;rank=10 scaffold_74 ensembl protein_coding_gene 188708 196519 . - . ID=Phyra96382;biotype=protein_coding;external_name=C_scaffold_74000010;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 188708 196519 . - . ID=Phyra96382;Parent=Phyra96382;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 188708 189711 . - 0 ID=Phyra96382;Parent=Phyra96382;rank=16 scaffold_74 . exon 188708 189711 . - . ID=Phyra96382.16;Parent=Phyra96382;constitutive=1;ensembl_phase=1;rank=16 scaffold_74 . CDS 189942 190030 . - 0 ID=Phyra96382;Parent=Phyra96382;rank=15 scaffold_74 . exon 189942 190030 . - . ID=Phyra96382.15;Parent=Phyra96382;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=15 scaffold_74 . CDS 190093 190319 . - 0 ID=Phyra96382;Parent=Phyra96382;rank=14 scaffold_74 . exon 190093 190319 . - . ID=Phyra96382.14;Parent=Phyra96382;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_74 . CDS 190344 190502 . - 0 ID=Phyra96382;Parent=Phyra96382;rank=13 scaffold_74 . exon 190344 190502 . - . ID=Phyra96382.13;Parent=Phyra96382;constitutive=1;rank=13 scaffold_74 . CDS 190575 190944 . - 0 ID=Phyra96382;Parent=Phyra96382;rank=12 scaffold_74 . exon 190575 190944 . - . ID=Phyra96382.12;Parent=Phyra96382;constitutive=1;ensembl_phase=2;rank=12 scaffold_74 . CDS 191026 192565 . - 0 ID=Phyra96382;Parent=Phyra96382;rank=11 scaffold_74 . exon 191026 192565 . - . ID=Phyra96382.11;Parent=Phyra96382;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_74 . CDS 192614 192728 . - 0 ID=Phyra96382;Parent=Phyra96382;rank=10 scaffold_74 . exon 192614 192728 . - . ID=Phyra96382.10;Parent=Phyra96382;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_74 . CDS 193044 193145 . - 0 ID=Phyra96382;Parent=Phyra96382;rank=9 scaffold_74 . exon 193044 193145 . - . ID=Phyra96382.9;Parent=Phyra96382;constitutive=1;rank=9 scaffold_74 . CDS 193284 193682 . - 0 ID=Phyra96382;Parent=Phyra96382;rank=8 scaffold_74 . exon 193284 193682 . - . ID=Phyra96382.8;Parent=Phyra96382;constitutive=1;rank=8 scaffold_74 . CDS 193950 194101 . - 0 ID=Phyra96382;Parent=Phyra96382;rank=7 scaffold_74 . exon 193950 194101 . - . ID=Phyra96382.7;Parent=Phyra96382;constitutive=1;ensembl_phase=1;rank=7 scaffold_74 . CDS 194198 194981 . - 0 ID=Phyra96382;Parent=Phyra96382;rank=6 scaffold_74 . exon 194198 194981 . - . ID=Phyra96382.6;Parent=Phyra96382;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_74 . CDS 195059 195153 . - 0 ID=Phyra96382;Parent=Phyra96382;rank=5 scaffold_74 . CDS 195212 195267 . - 0 ID=Phyra96382;Parent=Phyra96382;rank=4 scaffold_74 . CDS 195331 195445 . - 0 ID=Phyra96382;Parent=Phyra96382;rank=3 scaffold_74 . CDS 195583 196372 . - 0 ID=Phyra96382;Parent=Phyra96382;rank=2 scaffold_74 . CDS 196490 196519 . - 0 ID=Phyra96382;Parent=Phyra96382;rank=1 scaffold_74 . repeat_region 201619 201686 . ? . description=trf scaffold_74 ensembl protein_coding_gene 196877 197962 . + . ID=Phyra52845;biotype=protein_coding;external_name=gwEuk.74.2.1;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 196877 197962 . + . ID=Phyra52845;Parent=Phyra52845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 196877 196989 . + 0 ID=Phyra52845;Parent=Phyra52845;rank=1 scaffold_74 . exon 196877 196989 . + . ID=Phyra52845.1;Parent=Phyra52845;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_74 . CDS 197043 197231 . + 0 ID=Phyra52845;Parent=Phyra52845;rank=2 scaffold_74 . exon 197043 197231 . + . ID=Phyra52845.2;Parent=Phyra52845;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_74 . CDS 197306 197610 . + 0 ID=Phyra52845;Parent=Phyra52845;rank=3 scaffold_74 . exon 197306 197610 . + . ID=Phyra52845.3;Parent=Phyra52845;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_74 . CDS 197676 197741 . + 0 ID=Phyra52845;Parent=Phyra52845;rank=4 scaffold_74 . exon 197676 197741 . + . ID=Phyra52845.4;Parent=Phyra52845;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_74 . CDS 197820 197962 . + 0 ID=Phyra52845;Parent=Phyra52845;rank=5 scaffold_74 . exon 197820 197962 . + . ID=Phyra52845.5;Parent=Phyra52845;constitutive=1;ensembl_phase=1;rank=5 scaffold_74 ensembl protein_coding_gene 199562 200384 . + . ID=Phyra72035;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_74000004;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 199562 200384 . + . ID=Phyra72035;Parent=Phyra72035;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 199562 199651 . + 0 ID=Phyra72035;Parent=Phyra72035;rank=1 scaffold_74 . exon 199562 199651 . + . ID=Phyra72035.1;Parent=Phyra72035;constitutive=1;rank=1 scaffold_74 . CDS 199714 199830 . + 0 ID=Phyra72035;Parent=Phyra72035;rank=2 scaffold_74 . exon 199714 199830 . + . ID=Phyra72035.2;Parent=Phyra72035;constitutive=1;rank=2 scaffold_74 . CDS 199895 200014 . + 0 ID=Phyra72035;Parent=Phyra72035;rank=3 scaffold_74 . exon 199895 200014 . + . ID=Phyra72035.3;Parent=Phyra72035;constitutive=1;rank=3 scaffold_74 . CDS 200085 200122 . + 0 ID=Phyra72035;Parent=Phyra72035;rank=4 scaffold_74 . exon 200085 200122 . + . ID=Phyra72035.4;Parent=Phyra72035;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_74 . CDS 200186 200384 . + 0 ID=Phyra72035;Parent=Phyra72035;rank=5 scaffold_74 . exon 200186 200384 . + . ID=Phyra72035.5;Parent=Phyra72035;constitutive=1;ensembl_phase=2;rank=5 scaffold_74 ensembl protein_coding_gene 200595 202452 . - . ID=Phyra82616;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000061;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 200595 202452 . - . ID=Phyra82616;Parent=Phyra82616;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 200595 201882 . - 0 ID=Phyra82616;Parent=Phyra82616;rank=3 scaffold_74 . exon 200595 201882 . - . ID=Phyra82616.3;Parent=Phyra82616;constitutive=1;ensembl_phase=2;rank=3 scaffold_74 . CDS 201907 202272 . - 0 ID=Phyra82616;Parent=Phyra82616;rank=2 scaffold_74 . exon 201907 202272 . - . ID=Phyra82616.2;Parent=Phyra82616;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_74 . CDS 202307 202452 . - 0 ID=Phyra82616;Parent=Phyra82616;rank=1 scaffold_74 . exon 202307 202452 . - . ID=Phyra82616.1;Parent=Phyra82616;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_74 . exon 195059 195153 . - . ID=Phyra96382.5;Parent=Phyra96382;constitutive=1;ensembl_phase=1;rank=5 scaffold_74 . exon 195212 195267 . - . ID=Phyra96382.4;Parent=Phyra96382;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_74 . exon 195331 195445 . - . ID=Phyra96382.3;Parent=Phyra96382;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_74 . exon 195583 196372 . - . ID=Phyra96382.2;Parent=Phyra96382;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_74 . exon 196490 196519 . - . ID=Phyra96382.1;Parent=Phyra96382;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 198237 199170 . - . ID=Phyra96384;biotype=protein_coding;external_name=C_scaffold_74000012;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 198237 199170 . - . ID=Phyra96384;Parent=Phyra96384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 198237 198386 . - 0 ID=Phyra96384;Parent=Phyra96384;rank=3 scaffold_74 . exon 198237 198386 . - . ID=Phyra96384.3;Parent=Phyra96384;constitutive=1;rank=3 scaffold_74 . CDS 198432 199028 . - 0 ID=Phyra96384;Parent=Phyra96384;rank=2 scaffold_74 . exon 198432 199028 . - . ID=Phyra96384.2;Parent=Phyra96384;constitutive=1;rank=2 scaffold_74 . CDS 199105 199170 . - 0 ID=Phyra96384;Parent=Phyra96384;rank=1 scaffold_74 . exon 199105 199170 . - . ID=Phyra96384.1;Parent=Phyra96384;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 202962 204532 . + . ID=Phyra96387;biotype=protein_coding;external_name=C_scaffold_74000015;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 202962 204532 . + . ID=Phyra96387;Parent=Phyra96387;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 202962 203040 . + 0 ID=Phyra96387;Parent=Phyra96387;rank=1 scaffold_74 . exon 202962 203040 . + . ID=Phyra96387.1;Parent=Phyra96387;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . CDS 203103 203166 . + 0 ID=Phyra96387;Parent=Phyra96387;rank=2 scaffold_74 . exon 203103 203166 . + . ID=Phyra96387.2;Parent=Phyra96387;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_74 . CDS 203256 203424 . + 0 ID=Phyra96387;Parent=Phyra96387;rank=3 scaffold_74 . exon 203256 203424 . + . ID=Phyra96387.3;Parent=Phyra96387;constitutive=1;ensembl_phase=2;rank=3 scaffold_74 . CDS 203490 203540 . + 0 ID=Phyra96387;Parent=Phyra96387;rank=4 scaffold_74 . exon 203490 203540 . + . ID=Phyra96387.4;Parent=Phyra96387;constitutive=1;rank=4 scaffold_74 . CDS 203615 203812 . + 0 ID=Phyra96387;Parent=Phyra96387;rank=5 scaffold_74 . exon 203615 203812 . + . ID=Phyra96387.5;Parent=Phyra96387;constitutive=1;rank=5 scaffold_74 . CDS 203891 204017 . + 0 ID=Phyra96387;Parent=Phyra96387;rank=6 scaffold_74 . exon 203891 204017 . + . ID=Phyra96387.6;Parent=Phyra96387;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_74 . CDS 204081 204103 . + 0 ID=Phyra96387;Parent=Phyra96387;rank=7 scaffold_74 . exon 204081 204103 . + . ID=Phyra96387.7;Parent=Phyra96387;constitutive=1;ensembl_phase=1;rank=7 scaffold_74 . CDS 204155 204532 . + 0 ID=Phyra96387;Parent=Phyra96387;rank=8 scaffold_74 . exon 204155 204532 . + . ID=Phyra96387.8;Parent=Phyra96387;constitutive=1;rank=8 scaffold_74 . biological_region 206734 206739 0.999 + . logic_name=eponine scaffold_74 . biological_region 206782 206788 0.999 + . logic_name=eponine scaffold_74 . biological_region 207100 207100 0.999 - . logic_name=eponine scaffold_74 ensembl protein_coding_gene 204849 208698 . - . ID=Phyra82618;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000063;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 204849 208698 . - . ID=Phyra82618;Parent=Phyra82618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 204849 205064 . - 0 ID=Phyra82618;Parent=Phyra82618;rank=5 scaffold_74 . exon 204849 205064 . - . ID=Phyra82618.5;Parent=Phyra82618;constitutive=1;rank=5 scaffold_74 . CDS 205145 205498 . - 0 ID=Phyra82618;Parent=Phyra82618;rank=4 scaffold_74 . exon 205145 205498 . - . ID=Phyra82618.4;Parent=Phyra82618;constitutive=1;rank=4 scaffold_74 . CDS 205706 206751 . - 0 ID=Phyra82618;Parent=Phyra82618;rank=3 scaffold_74 . exon 205706 206751 . - . ID=Phyra82618.3;Parent=Phyra82618;constitutive=1;ensembl_phase=1;rank=3 scaffold_74 . CDS 206822 207148 . - 0 ID=Phyra82618;Parent=Phyra82618;rank=2 scaffold_74 . exon 206822 207148 . - . ID=Phyra82618.2;Parent=Phyra82618;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 207402 208698 . - 0 ID=Phyra82618;Parent=Phyra82618;rank=1 scaffold_74 . exon 207402 208698 . - . ID=Phyra82618.1;Parent=Phyra82618;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 ensembl protein_coding_gene 209176 211350 . + . ID=Phyra82619;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000064;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 209176 211350 . + . ID=Phyra82619;Parent=Phyra82619;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 209176 209241 . + 0 ID=Phyra82619;Parent=Phyra82619;rank=1 scaffold_74 . exon 209176 209241 . + . ID=Phyra82619.1;Parent=Phyra82619;constitutive=1;rank=1 scaffold_74 . CDS 209310 209489 . + 0 ID=Phyra82619;Parent=Phyra82619;rank=2 scaffold_74 . exon 209310 209489 . + . ID=Phyra82619.2;Parent=Phyra82619;constitutive=1;rank=2 scaffold_74 . CDS 209561 209752 . + 0 ID=Phyra82619;Parent=Phyra82619;rank=3 scaffold_74 . exon 209561 209752 . + . ID=Phyra82619.3;Parent=Phyra82619;constitutive=1;rank=3 scaffold_74 . CDS 209879 210436 . + 0 ID=Phyra82619;Parent=Phyra82619;rank=4 scaffold_74 . exon 209879 210436 . + . ID=Phyra82619.4;Parent=Phyra82619;constitutive=1;rank=4 scaffold_74 . CDS 210506 210943 . + 0 ID=Phyra82619;Parent=Phyra82619;rank=5 scaffold_74 . exon 210506 210943 . + . ID=Phyra82619.5;Parent=Phyra82619;constitutive=1;rank=5 scaffold_74 . CDS 211000 211133 . + 0 ID=Phyra82619;Parent=Phyra82619;rank=6 scaffold_74 . exon 211000 211133 . + . ID=Phyra82619.6;Parent=Phyra82619;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_74 . CDS 211209 211350 . + 0 ID=Phyra82619;Parent=Phyra82619;rank=7 scaffold_74 . exon 211209 211350 . + . ID=Phyra82619.7;Parent=Phyra82619;constitutive=1;ensembl_phase=2;rank=7 scaffold_74 ensembl protein_coding_gene 212421 213482 . + . ID=Phyra82621;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000066;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 212421 213482 . + . ID=Phyra82621;Parent=Phyra82621;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 212421 212607 . + 0 ID=Phyra82621;Parent=Phyra82621;rank=1 scaffold_74 . exon 212421 212607 . + . ID=Phyra82621.1;Parent=Phyra82621;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . CDS 212671 212942 . + 0 ID=Phyra82621;Parent=Phyra82621;rank=2 scaffold_74 . exon 212671 212942 . + . ID=Phyra82621.2;Parent=Phyra82621;constitutive=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 212997 213482 . + 0 ID=Phyra82621;Parent=Phyra82621;rank=3 scaffold_74 . exon 212997 213482 . + . ID=Phyra82621.3;Parent=Phyra82621;constitutive=1;rank=3 scaffold_74 ensembl protein_coding_gene 213586 214658 . - . ID=Phyra82622;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000067;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 213586 214658 . - . ID=Phyra82622;Parent=Phyra82622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 213586 214293 . - 0 ID=Phyra82622;Parent=Phyra82622;rank=3 scaffold_74 . exon 213586 214293 . - . ID=Phyra82622.3;Parent=Phyra82622;constitutive=1;rank=3 scaffold_74 . CDS 214352 214460 . - 0 ID=Phyra82622;Parent=Phyra82622;rank=2 scaffold_74 . exon 214352 214460 . - . ID=Phyra82622.2;Parent=Phyra82622;constitutive=1;ensembl_phase=2;rank=2 scaffold_74 . CDS 214510 214658 . - 0 ID=Phyra82622;Parent=Phyra82622;rank=1 scaffold_74 ensembl protein_coding_gene 211651 212302 . - . ID=Phyra96392;biotype=protein_coding;external_name=C_scaffold_74000020;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 211651 212302 . - . ID=Phyra96392;Parent=Phyra96392;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 211651 212302 . - 0 ID=Phyra96392;Parent=Phyra96392;rank=1 scaffold_74 . exon 211651 212302 . - . ID=Phyra96392.1;Parent=Phyra96392;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . repeat_region 222330 222367 . ? . description=trf scaffold_74 . repeat_region 223719 223744 . ? . description=trf scaffold_74 . exon 214510 214658 . - . ID=Phyra82622.1;Parent=Phyra82622;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_74 ensembl protein_coding_gene 214801 216192 . - . ID=Phyra82623;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000068;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 214801 216192 . - . ID=Phyra82623;Parent=Phyra82623;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 214801 214947 . - 0 ID=Phyra82623;Parent=Phyra82623;rank=7 scaffold_74 . exon 214801 214947 . - . ID=Phyra82623.7;Parent=Phyra82623;constitutive=1;rank=7 scaffold_74 . CDS 215012 215123 . - 0 ID=Phyra82623;Parent=Phyra82623;rank=6 scaffold_74 . exon 215012 215123 . - . ID=Phyra82623.6;Parent=Phyra82623;constitutive=1;ensembl_phase=2;rank=6 scaffold_74 . CDS 215184 215351 . - 0 ID=Phyra82623;Parent=Phyra82623;rank=5 scaffold_74 . exon 215184 215351 . - . ID=Phyra82623.5;Parent=Phyra82623;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_74 . CDS 215420 215585 . - 0 ID=Phyra82623;Parent=Phyra82623;rank=4 scaffold_74 . exon 215420 215585 . - . ID=Phyra82623.4;Parent=Phyra82623;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_74 . CDS 215767 215872 . - 0 ID=Phyra82623;Parent=Phyra82623;rank=3 scaffold_74 . exon 215767 215872 . - . ID=Phyra82623.3;Parent=Phyra82623;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_74 . CDS 215982 216058 . - 0 ID=Phyra82623;Parent=Phyra82623;rank=2 scaffold_74 . exon 215982 216058 . - . ID=Phyra82623.2;Parent=Phyra82623;constitutive=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 216138 216192 . - 0 ID=Phyra82623;Parent=Phyra82623;rank=1 scaffold_74 . exon 216138 216192 . - . ID=Phyra82623.1;Parent=Phyra82623;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 ensembl protein_coding_gene 216452 220071 . + . ID=Phyra82624;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000069;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 216452 220071 . + . ID=Phyra82624;Parent=Phyra82624;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 216452 217282 . + 0 ID=Phyra82624;Parent=Phyra82624;rank=1 scaffold_74 . exon 216452 217282 . + . ID=Phyra82624.1;Parent=Phyra82624;constitutive=1;rank=1 scaffold_74 . CDS 217731 217787 . + 0 ID=Phyra82624;Parent=Phyra82624;rank=2 scaffold_74 . exon 217731 217787 . + . ID=Phyra82624.2;Parent=Phyra82624;constitutive=1;rank=2 scaffold_74 . CDS 218075 219291 . + 0 ID=Phyra82624;Parent=Phyra82624;rank=3 scaffold_74 . exon 218075 219291 . + . ID=Phyra82624.3;Parent=Phyra82624;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_74 . CDS 219362 219542 . + 0 ID=Phyra82624;Parent=Phyra82624;rank=4 scaffold_74 . exon 219362 219542 . + . ID=Phyra82624.4;Parent=Phyra82624;constitutive=1;ensembl_phase=2;rank=4 scaffold_74 . CDS 219591 219614 . + 0 ID=Phyra82624;Parent=Phyra82624;rank=5 scaffold_74 . exon 219591 219614 . + . ID=Phyra82624.5;Parent=Phyra82624;constitutive=1;rank=5 scaffold_74 . CDS 219666 219945 . + 0 ID=Phyra82624;Parent=Phyra82624;rank=6 scaffold_74 . exon 219666 219945 . + . ID=Phyra82624.6;Parent=Phyra82624;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_74 . CDS 220046 220071 . + 0 ID=Phyra82624;Parent=Phyra82624;rank=7 scaffold_74 . exon 220046 220071 . + . ID=Phyra82624.7;Parent=Phyra82624;constitutive=1;ensembl_phase=1;rank=7 scaffold_74 ensembl protein_coding_gene 220261 222770 . - . ID=Phyra82625;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000070;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 220261 222770 . - . ID=Phyra82625;Parent=Phyra82625;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 220261 220477 . - 0 ID=Phyra82625;Parent=Phyra82625;rank=7 scaffold_74 . exon 220261 220477 . - . ID=Phyra82625.7;Parent=Phyra82625;constitutive=1;ensembl_phase=2;rank=7 scaffold_74 . CDS 220559 220659 . - 0 ID=Phyra82625;Parent=Phyra82625;rank=6 scaffold_74 . exon 220559 220659 . - . ID=Phyra82625.6;Parent=Phyra82625;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_74 . CDS 220724 221308 . - 0 ID=Phyra82625;Parent=Phyra82625;rank=5 scaffold_74 . exon 220724 221308 . - . ID=Phyra82625.5;Parent=Phyra82625;constitutive=1;rank=5 scaffold_74 . CDS 221378 221948 . - 0 ID=Phyra82625;Parent=Phyra82625;rank=4 scaffold_74 . exon 221378 221948 . - . ID=Phyra82625.4;Parent=Phyra82625;constitutive=1;ensembl_phase=2;rank=4 scaffold_74 . CDS 222015 222063 . - 0 ID=Phyra82625;Parent=Phyra82625;rank=3 scaffold_74 . exon 222015 222063 . - . ID=Phyra82625.3;Parent=Phyra82625;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_74 . CDS 222281 222363 . - 0 ID=Phyra82625;Parent=Phyra82625;rank=2 scaffold_74 . exon 222281 222363 . - . ID=Phyra82625.2;Parent=Phyra82625;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_74 . CDS 222448 222770 . - 0 ID=Phyra82625;Parent=Phyra82625;rank=1 scaffold_74 . exon 222448 222770 . - . ID=Phyra82625.1;Parent=Phyra82625;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_74 ensembl protein_coding_gene 223709 224133 . + . ID=Phyra82626;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000071;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 223709 224133 . + . ID=Phyra82626;Parent=Phyra82626;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 223709 224033 . + 0 ID=Phyra82626;Parent=Phyra82626;rank=1 scaffold_74 . exon 223709 224033 . + . ID=Phyra82626.1;Parent=Phyra82626;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . CDS 224069 224133 . + 0 ID=Phyra82626;Parent=Phyra82626;rank=2 scaffold_74 . exon 224069 224133 . + . ID=Phyra82626.2;Parent=Phyra82626;constitutive=1;ensembl_phase=1;rank=2 scaffold_74 . repeat_region 224539 224588 . ? . description=dust scaffold_74 . repeat_region 225879 226121 . ? . description=dust scaffold_74 . biological_region 226804 226806 0.999 + . logic_name=eponine scaffold_74 . biological_region 227211 227211 0.999 - . logic_name=eponine scaffold_74 . repeat_region 228257 228398 . ? . description=dust scaffold_74 . biological_region 229026 229030 0.999 + . logic_name=eponine scaffold_74 . repeat_region 229380 242171 . ? . description=dust scaffold_74 ensembl protein_coding_gene 225361 227789 . + . ID=Phyra82627;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000072;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 225361 227789 . + . ID=Phyra82627;Parent=Phyra82627;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 225361 225840 . + 0 ID=Phyra82627;Parent=Phyra82627;rank=1 scaffold_74 . exon 225361 225840 . + . ID=Phyra82627.1;Parent=Phyra82627;constitutive=1;rank=1 scaffold_74 . CDS 226131 227789 . + 0 ID=Phyra82627;Parent=Phyra82627;rank=2 scaffold_74 . exon 226131 227789 . + . ID=Phyra82627.2;Parent=Phyra82627;constitutive=1;rank=2 scaffold_74 ensembl protein_coding_gene 228407 229182 . + . ID=Phyra82628;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000073;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 228407 229182 . + . ID=Phyra82628;Parent=Phyra82628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 228407 229063 . + 0 ID=Phyra82628;Parent=Phyra82628;rank=1 scaffold_74 . exon 228407 229063 . + . ID=Phyra82628.1;Parent=Phyra82628;constitutive=1;rank=1 scaffold_74 . CDS 229165 229182 . + 0 ID=Phyra82628;Parent=Phyra82628;rank=2 scaffold_74 . exon 229165 229182 . + . ID=Phyra82628.2;Parent=Phyra82628;constitutive=1;rank=2 scaffold_74 . repeat_region 243269 243485 . ? . description=trf scaffold_74 . repeat_region 243283 243519 . ? . description=trf scaffold_74 . repeat_region 243291 243403 . ? . description=trf scaffold_74 . repeat_region 243345 243457 . ? . description=trf scaffold_74 . repeat_region 243358 243536 . + . description=(TCG)n scaffold_74 . repeat_region 243368 243534 . ? . description=trf scaffold_74 ensembl protein_coding_gene 242925 245261 . - . ID=Phyra82629;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000074;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 242925 245261 . - . ID=Phyra82629;Parent=Phyra82629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 242925 243013 . - 0 ID=Phyra82629;Parent=Phyra82629;rank=3 scaffold_74 . exon 242925 243013 . - . ID=Phyra82629.3;Parent=Phyra82629;constitutive=1;ensembl_phase=1;rank=3 scaffold_74 . CDS 243211 244113 . - 0 ID=Phyra82629;Parent=Phyra82629;rank=2 scaffold_74 . exon 243211 244113 . - . ID=Phyra82629.2;Parent=Phyra82629;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 244175 245261 . - 0 ID=Phyra82629;Parent=Phyra82629;rank=1 scaffold_74 . repeat_region 245924 246617 . ? . description=dust scaffold_74 . repeat_region 247577 249669 . ? . description=dust scaffold_74 . biological_region 251484 251485 0.999 + . logic_name=eponine scaffold_74 . repeat_region 252093 253032 . ? . description=dust scaffold_74 ensembl protein_coding_gene 246626 246934 . + . ID=Phyra52854;biotype=protein_coding;external_name=gwEuk.74.11.1;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 246626 246934 . + . ID=Phyra52854;Parent=Phyra52854;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 246626 246934 . + 0 ID=Phyra52854;Parent=Phyra52854;rank=1 scaffold_74 . exon 246626 246934 . + . ID=Phyra52854.1;Parent=Phyra52854;constitutive=1;rank=1 scaffold_74 . exon 244175 245261 . - . ID=Phyra82629.1;Parent=Phyra82629;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . repeat_region 261897 261938 . ? . description=trf scaffold_74 . repeat_region 263061 263081 . ? . description=trf scaffold_74 ensembl protein_coding_gene 257604 263033 . - . ID=Phyra82631;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_74000076;logic_name=jgi_phyra1 scaffold_74 ensembl transcript 257604 263033 . - . ID=Phyra82631;Parent=Phyra82631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_74 . CDS 257604 257926 . - 0 ID=Phyra82631;Parent=Phyra82631;rank=5 scaffold_74 . exon 257604 257926 . - . ID=Phyra82631.5;Parent=Phyra82631;constitutive=1;ensembl_phase=1;rank=5 scaffold_74 . CDS 257959 258121 . - 0 ID=Phyra82631;Parent=Phyra82631;rank=4 scaffold_74 . exon 257959 258121 . - . ID=Phyra82631.4;Parent=Phyra82631;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_74 . CDS 259027 260418 . - 0 ID=Phyra82631;Parent=Phyra82631;rank=3 scaffold_74 . exon 259027 260418 . - . ID=Phyra82631.3;Parent=Phyra82631;constitutive=1;rank=3 scaffold_74 . CDS 261059 261625 . - 0 ID=Phyra82631;Parent=Phyra82631;rank=2 scaffold_74 . exon 261059 261625 . - . ID=Phyra82631.2;Parent=Phyra82631;constitutive=1;rank=2 scaffold_74 . CDS 262260 263033 . - 0 ID=Phyra82631;Parent=Phyra82631;rank=1 scaffold_74 . exon 262260 263033 . - . ID=Phyra82631.1;Parent=Phyra82631;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_72 1 270552 scaffold_72 . biological_region 2542 2545 0.999 + . logic_name=eponine scaffold_72 . biological_region 3224 3226 0.999 + . logic_name=eponine scaffold_72 . biological_region 4486 4487 0.999 + . logic_name=eponine scaffold_72 . repeat_region 4714 4744 . ? . description=dust scaffold_72 . biological_region 4855 4855 0.999 + . logic_name=eponine scaffold_72 . biological_region 6494 6496 0.999 - . logic_name=eponine scaffold_72 ensembl protein_coding_gene 11 4087 . - . ID=Phyra82415;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000001;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 11 4087 . - . ID=Phyra82415;Parent=Phyra82415;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 11 2717 . - 0 ID=Phyra82415;Parent=Phyra82415;rank=2 scaffold_72 . exon 11 2717 . - . ID=Phyra82415.2;Parent=Phyra82415;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_72 . CDS 2818 4087 . - 0 ID=Phyra82415;Parent=Phyra82415;rank=1 scaffold_72 . exon 2818 4087 . - . ID=Phyra82415.1;Parent=Phyra82415;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 ensembl protein_coding_gene 4811 5161 . + . ID=Phyra82416;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000002;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 4811 5161 . + . ID=Phyra82416;Parent=Phyra82416;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 4811 5161 . + 0 ID=Phyra82416;Parent=Phyra82416;rank=1 scaffold_72 . exon 4811 5161 . + . ID=Phyra82416.1;Parent=Phyra82416;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 5733 9900 . + . ID=Phyra82417;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000003;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 5733 9900 . + . ID=Phyra82417;Parent=Phyra82417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 5733 5924 . + 0 ID=Phyra82417;Parent=Phyra82417;rank=1 scaffold_72 . exon 5733 5924 . + . ID=Phyra82417.1;Parent=Phyra82417;constitutive=1;rank=1 scaffold_72 . CDS 5980 9900 . + 0 ID=Phyra82417;Parent=Phyra82417;rank=2 scaffold_72 . exon 5980 9900 . + . ID=Phyra82417.2;Parent=Phyra82417;constitutive=1;rank=2 scaffold_72 . repeat_region 11236 11300 . ? . description=trf scaffold_72 . repeat_region 15567 15613 . ? . description=trf scaffold_72 . repeat_region 16136 16175 . ? . description=trf scaffold_72 ensembl protein_coding_gene 11622 13071 . + . ID=Phyra52679;biotype=protein_coding;external_name=gwEuk.72.41.1;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 11622 13071 . + . ID=Phyra52679;Parent=Phyra52679;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 11622 11769 . + 0 ID=Phyra52679;Parent=Phyra52679;rank=1 scaffold_72 . exon 11622 11769 . + . ID=Phyra52679.1;Parent=Phyra52679;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . CDS 11841 12521 . + 0 ID=Phyra52679;Parent=Phyra52679;rank=2 scaffold_72 . exon 11841 12521 . + . ID=Phyra52679.2;Parent=Phyra52679;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_72 . CDS 12591 12747 . + 0 ID=Phyra52679;Parent=Phyra52679;rank=3 scaffold_72 . exon 12591 12747 . + . ID=Phyra52679.3;Parent=Phyra52679;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_72 . CDS 12825 12915 . + 0 ID=Phyra52679;Parent=Phyra52679;rank=4 scaffold_72 . exon 12825 12915 . + . ID=Phyra52679.4;Parent=Phyra52679;constitutive=1;ensembl_phase=2;rank=4 scaffold_72 . CDS 12991 13071 . + 0 ID=Phyra52679;Parent=Phyra52679;rank=5 scaffold_72 . exon 12991 13071 . + . ID=Phyra52679.5;Parent=Phyra52679;constitutive=1;rank=5 scaffold_72 ensembl protein_coding_gene 10059 11045 . - . ID=Phyra82418;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000004;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 10059 11045 . - . ID=Phyra82418;Parent=Phyra82418;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 10059 11045 . - 0 ID=Phyra82418;Parent=Phyra82418;rank=1 scaffold_72 . exon 10059 11045 . - . ID=Phyra82418.1;Parent=Phyra82418;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 13246 15672 . - . ID=Phyra82420;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000006;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 13246 15672 . - . ID=Phyra82420;Parent=Phyra82420;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 13246 15111 . - 0 ID=Phyra82420;Parent=Phyra82420;rank=2 scaffold_72 . exon 13246 15111 . - . ID=Phyra82420.2;Parent=Phyra82420;constitutive=1;rank=2 scaffold_72 . CDS 15193 15672 . - 0 ID=Phyra82420;Parent=Phyra82420;rank=1 scaffold_72 . exon 15193 15672 . - . ID=Phyra82420.1;Parent=Phyra82420;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 17172 17909 . + . ID=Phyra82421;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000007;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 17172 17909 . + . ID=Phyra82421;Parent=Phyra82421;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 17172 17263 . + 0 ID=Phyra82421;Parent=Phyra82421;rank=1 scaffold_72 . exon 17172 17263 . + . ID=Phyra82421.1;Parent=Phyra82421;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 . CDS 17332 17470 . + 0 ID=Phyra82421;Parent=Phyra82421;rank=2 scaffold_72 . exon 17332 17470 . + . ID=Phyra82421.2;Parent=Phyra82421;constitutive=1;ensembl_phase=2;rank=2 scaffold_72 . CDS 17503 17723 . + 0 ID=Phyra82421;Parent=Phyra82421;rank=3 scaffold_72 . exon 17503 17723 . + . ID=Phyra82421.3;Parent=Phyra82421;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_72 . CDS 17807 17909 . + 0 ID=Phyra82421;Parent=Phyra82421;rank=4 scaffold_72 . exon 17807 17909 . + . ID=Phyra82421.4;Parent=Phyra82421;constitutive=1;ensembl_phase=2;rank=4 scaffold_72 ensembl protein_coding_gene 19159 20193 . + . ID=Phyra82422;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000008;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 19159 20193 . + . ID=Phyra82422;Parent=Phyra82422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 19159 20193 . + 0 ID=Phyra82422;Parent=Phyra82422;rank=1 scaffold_72 . exon 19159 20193 . + . ID=Phyra82422.1;Parent=Phyra82422;constitutive=1;rank=1 scaffold_72 . biological_region 25567 25570 0.999 + . logic_name=eponine scaffold_72 . biological_region 26440 26441 0.999 - . logic_name=eponine scaffold_72 . biological_region 28568 28570 0.999 + . logic_name=eponine scaffold_72 ensembl protein_coding_gene 22111 24099 . + . ID=Phyra82423;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000009;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 22111 24099 . + . ID=Phyra82423;Parent=Phyra82423;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 22111 24099 . + 0 ID=Phyra82423;Parent=Phyra82423;rank=1 scaffold_72 . exon 22111 24099 . + . ID=Phyra82423.1;Parent=Phyra82423;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 24445 26439 . - . ID=Phyra82424;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000010;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 24445 26439 . - . ID=Phyra82424;Parent=Phyra82424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 24445 26439 . - 0 ID=Phyra82424;Parent=Phyra82424;rank=1 scaffold_72 . exon 24445 26439 . - . ID=Phyra82424.1;Parent=Phyra82424;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 26531 27175 . + . ID=Phyra82425;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000011;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 26531 27175 . + . ID=Phyra82425;Parent=Phyra82425;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 26531 26536 . + 0 ID=Phyra82425;Parent=Phyra82425;rank=1 scaffold_72 . exon 26531 26536 . + . ID=Phyra82425.1;Parent=Phyra82425;constitutive=1;rank=1 scaffold_72 . CDS 26675 26734 . + 0 ID=Phyra82425;Parent=Phyra82425;rank=2 scaffold_72 . exon 26675 26734 . + . ID=Phyra82425.2;Parent=Phyra82425;constitutive=1;rank=2 scaffold_72 . CDS 26811 27006 . + 0 ID=Phyra82425;Parent=Phyra82425;rank=3 scaffold_72 . exon 26811 27006 . + . ID=Phyra82425.3;Parent=Phyra82425;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_72 . CDS 27030 27175 . + 0 ID=Phyra82425;Parent=Phyra82425;rank=4 scaffold_72 . exon 27030 27175 . + . ID=Phyra82425.4;Parent=Phyra82425;constitutive=1;ensembl_phase=1;rank=4 scaffold_72 ensembl protein_coding_gene 27860 43808 . + . ID=Phyra82426;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000012;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 27860 43808 . + . ID=Phyra82426;Parent=Phyra82426;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 27860 30775 . + 0 ID=Phyra82426;Parent=Phyra82426;rank=1 scaffold_72 . exon 27860 30775 . + . ID=Phyra82426.1;Parent=Phyra82426;constitutive=1;rank=1 scaffold_72 . CDS 30895 30978 . + 0 ID=Phyra82426;Parent=Phyra82426;rank=2 scaffold_72 . CDS 31035 43808 . + 0 ID=Phyra82426;Parent=Phyra82426;rank=3 scaffold_72 . exon 30895 30978 . + . ID=Phyra82426.2;Parent=Phyra82426;constitutive=1;rank=2 scaffold_72 . exon 31035 43808 . + . ID=Phyra82426.3;Parent=Phyra82426;constitutive=1;rank=3 scaffold_72 . repeat_region 43883 43912 . ? . description=trf scaffold_72 . biological_region 47899 47903 0.999 - . logic_name=eponine scaffold_72 ensembl protein_coding_gene 27860 43808 . + . ID=Phyra82426;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000012;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 27860 43808 . + . ID=Phyra82426;Parent=Phyra82426;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 27860 30775 . + 0 ID=Phyra82426;Parent=Phyra82426;rank=1 scaffold_72 . CDS 30895 30978 . + 0 ID=Phyra82426;Parent=Phyra82426;rank=2 scaffold_72 . CDS 31035 43808 . + 0 ID=Phyra82426;Parent=Phyra82426;rank=3 scaffold_72 ensembl protein_coding_gene 43976 45964 . + . ID=Phyra82427;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000013;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 43976 45964 . + . ID=Phyra82427;Parent=Phyra82427;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 43976 45964 . + 0 ID=Phyra82427;Parent=Phyra82427;rank=1 scaffold_72 . exon 43976 45964 . + . ID=Phyra82427.1;Parent=Phyra82427;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 46910 48727 . + . ID=Phyra96327;biotype=protein_coding;external_name=C_scaffold_72000002;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 46910 48727 . + . ID=Phyra96327;Parent=Phyra96327;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 46910 47002 . + 0 ID=Phyra96327;Parent=Phyra96327;rank=1 scaffold_72 . exon 46910 47002 . + . ID=Phyra96327.1;Parent=Phyra96327;constitutive=1;rank=1 scaffold_72 . CDS 47059 47288 . + 0 ID=Phyra96327;Parent=Phyra96327;rank=2 scaffold_72 . exon 47059 47288 . + . ID=Phyra96327.2;Parent=Phyra96327;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_72 . CDS 47358 47444 . + 0 ID=Phyra96327;Parent=Phyra96327;rank=3 scaffold_72 . exon 47358 47444 . + . ID=Phyra96327.3;Parent=Phyra96327;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_72 . CDS 47530 47628 . + 0 ID=Phyra96327;Parent=Phyra96327;rank=4 scaffold_72 . exon 47530 47628 . + . ID=Phyra96327.4;Parent=Phyra96327;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_72 . CDS 47692 48394 . + 0 ID=Phyra96327;Parent=Phyra96327;rank=5 scaffold_72 . exon 47692 48394 . + . ID=Phyra96327.5;Parent=Phyra96327;constitutive=1;ensembl_phase=2;rank=5 scaffold_72 . CDS 48425 48727 . + 0 ID=Phyra96327;Parent=Phyra96327;rank=6 scaffold_72 . repeat_region 48773 48783 . ? . description=dust scaffold_72 . repeat_region 50612 50625 . ? . description=dust scaffold_72 . repeat_region 52427 52474 . ? . description=dust scaffold_72 . repeat_region 52903 52918 . ? . description=dust scaffold_72 ensembl protein_coding_gene 48845 49237 . - . ID=Phyra52700;biotype=protein_coding;external_name=gwEuk.72.62.1;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 48845 49237 . - . ID=Phyra52700;Parent=Phyra52700;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 48845 48926 . - 0 ID=Phyra52700;Parent=Phyra52700;rank=2 scaffold_72 . exon 48845 48926 . - . ID=Phyra52700.2;Parent=Phyra52700;constitutive=1;ensembl_phase=2;rank=2 scaffold_72 . CDS 48999 49237 . - 0 ID=Phyra52700;Parent=Phyra52700;rank=1 scaffold_72 . exon 48999 49237 . - . ID=Phyra52700.1;Parent=Phyra52700;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 ensembl protein_coding_gene 52926 54017 . + . ID=Phyra82430;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000016;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 52926 54017 . + . ID=Phyra82430;Parent=Phyra82430;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 52926 53766 . + 0 ID=Phyra82430;Parent=Phyra82430;rank=1 scaffold_72 . exon 52926 53766 . + . ID=Phyra82430.1;Parent=Phyra82430;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . CDS 53848 54017 . + 0 ID=Phyra82430;Parent=Phyra82430;rank=2 scaffold_72 . exon 53848 54017 . + . ID=Phyra82430.2;Parent=Phyra82430;constitutive=1;ensembl_phase=1;rank=2 scaffold_72 ensembl protein_coding_gene 54270 56267 . - . ID=Phyra82431;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000017;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 54270 56267 . - . ID=Phyra82431;Parent=Phyra82431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 54270 54290 . - 0 ID=Phyra82431;Parent=Phyra82431;rank=4 scaffold_72 . exon 54270 54290 . - . ID=Phyra82431.4;Parent=Phyra82431;constitutive=1;rank=4 scaffold_72 . CDS 54317 54747 . - 0 ID=Phyra82431;Parent=Phyra82431;rank=3 scaffold_72 . exon 54317 54747 . - . ID=Phyra82431.3;Parent=Phyra82431;constitutive=1;ensembl_phase=1;rank=3 scaffold_72 . CDS 55114 56161 . - 0 ID=Phyra82431;Parent=Phyra82431;rank=2 scaffold_72 . exon 55114 56161 . - . ID=Phyra82431.2;Parent=Phyra82431;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_72 . CDS 56229 56267 . - 0 ID=Phyra82431;Parent=Phyra82431;rank=1 scaffold_72 . exon 56229 56267 . - . ID=Phyra82431.1;Parent=Phyra82431;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 56427 57564 . - . ID=Phyra82432;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000018;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 56427 57564 . - . ID=Phyra82432;Parent=Phyra82432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 56427 56803 . - 0 ID=Phyra82432;Parent=Phyra82432;rank=2 scaffold_72 . exon 56427 56803 . - . ID=Phyra82432.2;Parent=Phyra82432;constitutive=1;ensembl_phase=1;rank=2 scaffold_72 . CDS 56868 57564 . - 0 ID=Phyra82432;Parent=Phyra82432;rank=1 scaffold_72 . exon 56868 57564 . - . ID=Phyra82432.1;Parent=Phyra82432;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . exon 48425 48727 . + . ID=Phyra96327.6;Parent=Phyra96327;constitutive=1;rank=6 scaffold_72 . biological_region 59071 59073 0.999 + . logic_name=eponine scaffold_72 . biological_region 59160 59166 0.999 + . logic_name=eponine scaffold_72 . repeat_region 59729 59752 . ? . description=trf scaffold_72 . repeat_region 60930 60978 . ? . description=trf scaffold_72 . biological_region 62960 62963 0.999 + . logic_name=eponine scaffold_72 . biological_region 63012 63013 0.999 + . logic_name=eponine scaffold_72 . repeat_region 66575 66688 . ? . description=trf scaffold_72 ensembl protein_coding_gene 58616 59250 . - . ID=Phyra82433;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000019;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 58616 59250 . - . ID=Phyra82433;Parent=Phyra82433;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 58616 59033 . - 0 ID=Phyra82433;Parent=Phyra82433;rank=2 scaffold_72 . exon 58616 59033 . - . ID=Phyra82433.2;Parent=Phyra82433;constitutive=1;ensembl_phase=2;rank=2 scaffold_72 . CDS 59105 59250 . - 0 ID=Phyra82433;Parent=Phyra82433;rank=1 scaffold_72 . exon 59105 59250 . - . ID=Phyra82433.1;Parent=Phyra82433;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 . repeat_region 71348 71355 . ? . description=dust scaffold_72 . repeat_region 76216 76234 . ? . description=dust scaffold_72 . repeat_region 76263 76270 . ? . description=dust scaffold_72 ensembl protein_coding_gene 76350 81138 . + . ID=Phyra82434;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000020;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 76350 81138 . + . ID=Phyra82434;Parent=Phyra82434;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 76350 78492 . + 0 ID=Phyra82434;Parent=Phyra82434;rank=1 scaffold_72 . exon 76350 78492 . + . ID=Phyra82434.1;Parent=Phyra82434;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . CDS 78676 79625 . + 0 ID=Phyra82434;Parent=Phyra82434;rank=2 scaffold_72 . CDS 79699 81138 . + 0 ID=Phyra82434;Parent=Phyra82434;rank=3 scaffold_72 . biological_region 80235 80235 0.999 - . logic_name=eponine scaffold_72 . biological_region 80900 80900 0.999 + . logic_name=eponine scaffold_72 . biological_region 80955 80959 0.999 - . logic_name=eponine scaffold_72 . repeat_region 82407 82434 . ? . description=trf scaffold_72 . repeat_region 82407 82438 . ? . description=trf scaffold_72 . exon 78676 79625 . + . ID=Phyra82434.2;Parent=Phyra82434;constitutive=1;ensembl_phase=1;rank=2 scaffold_72 . exon 79699 81138 . + . ID=Phyra82434.3;Parent=Phyra82434;constitutive=1;rank=3 scaffold_72 ensembl protein_coding_gene 81222 82296 . - . ID=Phyra82435;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000021;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 81222 82296 . - . ID=Phyra82435;Parent=Phyra82435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 81222 82124 . - 0 ID=Phyra82435;Parent=Phyra82435;rank=2 scaffold_72 . exon 81222 82124 . - . ID=Phyra82435.2;Parent=Phyra82435;constitutive=1;rank=2 scaffold_72 . CDS 82159 82296 . - 0 ID=Phyra82435;Parent=Phyra82435;rank=1 scaffold_72 . exon 82159 82296 . - . ID=Phyra82435.1;Parent=Phyra82435;constitutive=1;rank=1 scaffold_72 . repeat_region 82809 87060 . ? . description=dust scaffold_72 . repeat_region 90450 90499 . ? . description=dust scaffold_72 ensembl protein_coding_gene 90293 90922 . + . ID=Phyra82436;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000022;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 90293 90922 . + . ID=Phyra82436;Parent=Phyra82436;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 90293 90295 . + 0 ID=Phyra82436;Parent=Phyra82436;rank=1 scaffold_72 . exon 90293 90295 . + . ID=Phyra82436.1;Parent=Phyra82436;constitutive=1;rank=1 scaffold_72 . CDS 90503 90922 . + 0 ID=Phyra82436;Parent=Phyra82436;rank=2 scaffold_72 . exon 90503 90922 . + . ID=Phyra82436.2;Parent=Phyra82436;constitutive=1;rank=2 scaffold_72 ensembl protein_coding_gene 91006 92215 . - . ID=Phyra82437;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000023;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 91006 92215 . - . ID=Phyra82437;Parent=Phyra82437;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 91006 91904 . - 0 ID=Phyra82437;Parent=Phyra82437;rank=2 scaffold_72 . exon 91006 91904 . - . ID=Phyra82437.2;Parent=Phyra82437;constitutive=1;ensembl_phase=1;rank=2 scaffold_72 . CDS 92206 92215 . - 0 ID=Phyra82437;Parent=Phyra82437;rank=1 scaffold_72 . exon 92206 92215 . - . ID=Phyra82437.1;Parent=Phyra82437;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . repeat_region 97696 97749 . ? . description=trf scaffold_72 . biological_region 98372 98372 0.999 + . logic_name=eponine scaffold_72 . repeat_region 98428 98451 . ? . description=trf scaffold_72 ensembl protein_coding_gene 104985 106583 . - . ID=Phyra52713;biotype=protein_coding;external_name=gwEuk.72.75.1;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 104985 106583 . - . ID=Phyra52713;Parent=Phyra52713;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 104985 106583 . - 0 ID=Phyra52713;Parent=Phyra52713;rank=1 scaffold_72 . exon 104985 106583 . - . ID=Phyra52713.1;Parent=Phyra52713;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 97862 98470 . + . ID=Phyra82438;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000024;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 97862 98470 . + . ID=Phyra82438;Parent=Phyra82438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 97862 98470 . + 0 ID=Phyra82438;Parent=Phyra82438;rank=1 scaffold_72 . exon 97862 98470 . + . ID=Phyra82438.1;Parent=Phyra82438;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 98607 99660 . - . ID=Phyra82439;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000025;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 98607 99660 . - . ID=Phyra82439;Parent=Phyra82439;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 98607 98828 . - 0 ID=Phyra82439;Parent=Phyra82439;rank=4 scaffold_72 . exon 98607 98828 . - . ID=Phyra82439.4;Parent=Phyra82439;constitutive=1;rank=4 scaffold_72 . CDS 98885 98954 . - 0 ID=Phyra82439;Parent=Phyra82439;rank=3 scaffold_72 . exon 98885 98954 . - . ID=Phyra82439.3;Parent=Phyra82439;constitutive=1;ensembl_phase=2;rank=3 scaffold_72 . CDS 99023 99117 . - 0 ID=Phyra82439;Parent=Phyra82439;rank=2 scaffold_72 . exon 99023 99117 . - . ID=Phyra82439.2;Parent=Phyra82439;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_72 . CDS 99181 99660 . - 0 ID=Phyra82439;Parent=Phyra82439;rank=1 scaffold_72 . exon 99181 99660 . - . ID=Phyra82439.1;Parent=Phyra82439;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 100017 101024 . - . ID=Phyra82440;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000026;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 100017 101024 . - . ID=Phyra82440;Parent=Phyra82440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 100017 101024 . - 0 ID=Phyra82440;Parent=Phyra82440;rank=1 scaffold_72 . exon 100017 101024 . - . ID=Phyra82440.1;Parent=Phyra82440;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 101182 102762 . - . ID=Phyra82441;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000027;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 101182 102762 . - . ID=Phyra82441;Parent=Phyra82441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 101182 102762 . - 0 ID=Phyra82441;Parent=Phyra82441;rank=1 scaffold_72 . exon 101182 102762 . - . ID=Phyra82441.1;Parent=Phyra82441;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 103987 104720 . - . ID=Phyra82442;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000028;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 103987 104720 . - . ID=Phyra82442;Parent=Phyra82442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 103987 104718 . - 0 ID=Phyra82442;Parent=Phyra82442;rank=1 scaffold_72 . exon 103987 104720 . - . ID=Phyra82442.1;Parent=Phyra82442;constitutive=1;ensembl_phase=-1;rank=1 scaffold_72 ensembl protein_coding_gene 111762 112367 . - . ID=Phyra72018;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_72000003;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 111762 112367 . - . ID=Phyra72018;Parent=Phyra72018;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 111762 112079 . - 0 ID=Phyra72018;Parent=Phyra72018;rank=2 scaffold_72 . exon 111762 112079 . - . ID=Phyra72018.2;Parent=Phyra72018;constitutive=1;rank=2 scaffold_72 . CDS 112347 112367 . - 0 ID=Phyra72018;Parent=Phyra72018;rank=1 scaffold_72 . exon 112347 112367 . - . ID=Phyra72018.1;Parent=Phyra72018;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 113987 116290 . - . ID=Phyra72019;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_72000004;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 113987 116290 . - . ID=Phyra72019;Parent=Phyra72019;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 113987 116290 . - 0 ID=Phyra72019;Parent=Phyra72019;rank=1 scaffold_72 . exon 113987 116290 . - . ID=Phyra72019.1;Parent=Phyra72019;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 106716 107357 . - . ID=Phyra82444;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000030;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 106716 107357 . - . ID=Phyra82444;Parent=Phyra82444;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 106716 107241 . - 0 ID=Phyra82444;Parent=Phyra82444;rank=2 scaffold_72 . exon 106716 107241 . - . ID=Phyra82444.2;Parent=Phyra82444;constitutive=1;ensembl_phase=2;rank=2 scaffold_72 . CDS 107341 107357 . - 0 ID=Phyra82444;Parent=Phyra82444;rank=1 scaffold_72 . exon 107341 107357 . - . ID=Phyra82444.1;Parent=Phyra82444;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 ensembl protein_coding_gene 108960 111610 . + . ID=Phyra82445;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000031;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 108960 111610 . + . ID=Phyra82445;Parent=Phyra82445;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 108960 110569 . + 0 ID=Phyra82445;Parent=Phyra82445;rank=1 scaffold_72 . exon 108960 110569 . + . ID=Phyra82445.1;Parent=Phyra82445;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 . CDS 110741 110943 . + 0 ID=Phyra82445;Parent=Phyra82445;rank=2 scaffold_72 . exon 110741 110943 . + . ID=Phyra82445.2;Parent=Phyra82445;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_72 . CDS 111003 111099 . + 0 ID=Phyra82445;Parent=Phyra82445;rank=3 scaffold_72 . exon 111003 111099 . + . ID=Phyra82445.3;Parent=Phyra82445;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_72 . CDS 111148 111610 . + 0 ID=Phyra82445;Parent=Phyra82445;rank=4 scaffold_72 . exon 111148 111610 . + . ID=Phyra82445.4;Parent=Phyra82445;constitutive=1;ensembl_phase=2;rank=4 scaffold_72 . biological_region 116418 116420 0.999 + . logic_name=eponine scaffold_72 . repeat_region 116632 116681 . ? . description=dust scaffold_72 . repeat_region 119380 119414 . ? . description=trf scaffold_72 . biological_region 119547 119548 0.999 - . logic_name=eponine scaffold_72 . repeat_region 120774 120796 . ? . description=trf scaffold_72 . biological_region 121953 121955 0.999 - . logic_name=eponine scaffold_72 . biological_region 122009 122011 0.999 + . logic_name=eponine scaffold_72 . repeat_region 123245 123264 . ? . description=trf scaffold_72 . repeat_region 123245 123264 . ? . description=dust scaffold_72 . biological_region 124053 124058 0.999 - . logic_name=eponine scaffold_72 . biological_region 124054 124055 0.999 + . logic_name=eponine scaffold_72 . biological_region 124111 124114 0.999 - . logic_name=eponine scaffold_72 . biological_region 124131 124133 0.999 + . logic_name=eponine scaffold_72 . biological_region 124146 124148 0.999 - . logic_name=eponine scaffold_72 . biological_region 124158 124161 0.999 - . logic_name=eponine scaffold_72 ensembl protein_coding_gene 120488 121081 . + . ID=Phyra52728;biotype=protein_coding;external_name=gwEuk.72.90.1;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 120488 121081 . + . ID=Phyra52728;Parent=Phyra52728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 120488 121081 . + 0 ID=Phyra52728;Parent=Phyra52728;rank=1 scaffold_72 . exon 120488 121081 . + . ID=Phyra52728.1;Parent=Phyra52728;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 116821 120355 . - . ID=Phyra82448;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000034;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 116821 120355 . - . ID=Phyra82448;Parent=Phyra82448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 116821 117206 . - 0 ID=Phyra82448;Parent=Phyra82448;rank=7 scaffold_72 . exon 116821 117206 . - . ID=Phyra82448.7;Parent=Phyra82448;constitutive=1;ensembl_phase=1;rank=7 scaffold_72 . CDS 117253 117449 . - 0 ID=Phyra82448;Parent=Phyra82448;rank=6 scaffold_72 . exon 117253 117449 . - . ID=Phyra82448.6;Parent=Phyra82448;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_72 . CDS 117545 117650 . - 0 ID=Phyra82448;Parent=Phyra82448;rank=5 scaffold_72 . exon 117545 117650 . - . ID=Phyra82448.5;Parent=Phyra82448;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_72 . CDS 118113 119277 . - 0 ID=Phyra82448;Parent=Phyra82448;rank=4 scaffold_72 . exon 118113 119277 . - . ID=Phyra82448.4;Parent=Phyra82448;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_72 . CDS 119341 119516 . - 0 ID=Phyra82448;Parent=Phyra82448;rank=3 scaffold_72 . exon 119341 119516 . - . ID=Phyra82448.3;Parent=Phyra82448;constitutive=1;ensembl_phase=1;rank=3 scaffold_72 . CDS 119830 119919 . - 0 ID=Phyra82448;Parent=Phyra82448;rank=2 scaffold_72 . exon 119830 119919 . - . ID=Phyra82448.2;Parent=Phyra82448;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_72 . CDS 120328 120355 . - 0 ID=Phyra82448;Parent=Phyra82448;rank=1 scaffold_72 . exon 120328 120355 . - . ID=Phyra82448.1;Parent=Phyra82448;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 ensembl protein_coding_gene 121490 122419 . - . ID=Phyra82450;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000036;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 121490 122419 . - . ID=Phyra82450;Parent=Phyra82450;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 121490 122419 . - 0 ID=Phyra82450;Parent=Phyra82450;rank=1 scaffold_72 . exon 121490 122419 . - . ID=Phyra82450.1;Parent=Phyra82450;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 123943 125053 . + . ID=Phyra82451;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000037;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 123943 125053 . + . ID=Phyra82451;Parent=Phyra82451;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 123943 124529 . + 0 ID=Phyra82451;Parent=Phyra82451;rank=1 scaffold_72 . exon 123943 124529 . + . ID=Phyra82451.1;Parent=Phyra82451;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 . CDS 124590 124661 . + 0 ID=Phyra82451;Parent=Phyra82451;rank=2 scaffold_72 . exon 124590 124661 . + . ID=Phyra82451.2;Parent=Phyra82451;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_72 . CDS 124729 125053 . + 0 ID=Phyra82451;Parent=Phyra82451;rank=3 scaffold_72 . exon 124729 125053 . + . ID=Phyra82451.3;Parent=Phyra82451;constitutive=1;ensembl_phase=2;rank=3 scaffold_72 . biological_region 137547 137550 0.999 + . logic_name=eponine scaffold_72 . biological_region 138424 138427 0.999 + . logic_name=eponine scaffold_72 . biological_region 138489 138491 0.999 - . logic_name=eponine scaffold_72 ensembl protein_coding_gene 143884 145905 . - . ID=Phyra72021;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_72000006;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 143884 145905 . - . ID=Phyra72021;Parent=Phyra72021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 143884 145905 . - 0 ID=Phyra72021;Parent=Phyra72021;rank=1 scaffold_72 . exon 143884 145905 . - . ID=Phyra72021.1;Parent=Phyra72021;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 137548 138634 . - . ID=Phyra82452;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000038;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 137548 138634 . - . ID=Phyra82452;Parent=Phyra82452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 137548 137849 . - 0 ID=Phyra82452;Parent=Phyra82452;rank=4 scaffold_72 . exon 137548 137849 . - . ID=Phyra82452.4;Parent=Phyra82452;constitutive=1;ensembl_phase=1;rank=4 scaffold_72 . CDS 137925 138021 . - 0 ID=Phyra82452;Parent=Phyra82452;rank=3 scaffold_72 . exon 137925 138021 . - . ID=Phyra82452.3;Parent=Phyra82452;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_72 . CDS 138094 138237 . - 0 ID=Phyra82452;Parent=Phyra82452;rank=2 scaffold_72 . exon 138094 138237 . - . ID=Phyra82452.2;Parent=Phyra82452;constitutive=1;rank=2 scaffold_72 . CDS 138305 138634 . - 0 ID=Phyra82452;Parent=Phyra82452;rank=1 scaffold_72 . exon 138305 138634 . - . ID=Phyra82452.1;Parent=Phyra82452;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 139512 143564 . - . ID=Phyra82453;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000039;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 139512 143564 . - . ID=Phyra82453;Parent=Phyra82453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 139512 141172 . - 0 ID=Phyra82453;Parent=Phyra82453;rank=3 scaffold_72 . exon 139512 141172 . - . ID=Phyra82453.3;Parent=Phyra82453;constitutive=1;ensembl_phase=1;rank=3 scaffold_72 . CDS 141239 141363 . - 0 ID=Phyra82453;Parent=Phyra82453;rank=2 scaffold_72 . exon 141239 141363 . - . ID=Phyra82453.2;Parent=Phyra82453;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_72 . CDS 141580 143564 . - 0 ID=Phyra82453;Parent=Phyra82453;rank=1 scaffold_72 . exon 141580 143564 . - . ID=Phyra82453.1;Parent=Phyra82453;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 . repeat_region 149986 150040 . - . description=Polinton-1_PI scaffold_72 . repeat_region 150588 150840 . + . description=Polinton-1_PI scaffold_72 ensembl protein_coding_gene 146306 148005 . - . ID=Phyra82455;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000041;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 146306 148005 . - . ID=Phyra82455;Parent=Phyra82455;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 146306 146728 . - 0 ID=Phyra82455;Parent=Phyra82455;rank=7 scaffold_72 . exon 146306 146728 . - . ID=Phyra82455.7;Parent=Phyra82455;constitutive=1;rank=7 scaffold_72 . CDS 146798 146956 . - 0 ID=Phyra82455;Parent=Phyra82455;rank=6 scaffold_72 . exon 146798 146956 . - . ID=Phyra82455.6;Parent=Phyra82455;constitutive=1;rank=6 scaffold_72 . CDS 147017 147146 . - 0 ID=Phyra82455;Parent=Phyra82455;rank=5 scaffold_72 . exon 147017 147146 . - . ID=Phyra82455.5;Parent=Phyra82455;constitutive=1;ensembl_phase=2;rank=5 scaffold_72 . CDS 147212 147330 . - 0 ID=Phyra82455;Parent=Phyra82455;rank=4 scaffold_72 . exon 147212 147330 . - . ID=Phyra82455.4;Parent=Phyra82455;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_72 . CDS 147495 147578 . - 0 ID=Phyra82455;Parent=Phyra82455;rank=3 scaffold_72 . exon 147495 147578 . - . ID=Phyra82455.3;Parent=Phyra82455;constitutive=1;rank=3 scaffold_72 . CDS 147666 147910 . - 0 ID=Phyra82455;Parent=Phyra82455;rank=2 scaffold_72 . exon 147666 147910 . - . ID=Phyra82455.2;Parent=Phyra82455;constitutive=1;ensembl_phase=1;rank=2 scaffold_72 . CDS 147984 148005 . - 0 ID=Phyra82455;Parent=Phyra82455;rank=1 scaffold_72 . exon 147984 148005 . - . ID=Phyra82455.1;Parent=Phyra82455;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 ensembl protein_coding_gene 148209 149900 . + . ID=Phyra82456;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000042;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 148209 149900 . + . ID=Phyra82456;Parent=Phyra82456;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 148209 149900 . + 0 ID=Phyra82456;Parent=Phyra82456;rank=1 scaffold_72 . exon 148209 149900 . + . ID=Phyra82456.1;Parent=Phyra82456;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 150676 151227 . + . ID=Phyra82457;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000043;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 150676 151227 . + . ID=Phyra82457;Parent=Phyra82457;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 150676 151227 . + 0 ID=Phyra82457;Parent=Phyra82457;rank=1 scaffold_72 . exon 150676 151227 . + . ID=Phyra82457.1;Parent=Phyra82457;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 152556 153287 . + . ID=Phyra82458;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000044;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 152556 153287 . + . ID=Phyra82458;Parent=Phyra82458;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 152556 153287 . + 0 ID=Phyra82458;Parent=Phyra82458;rank=1 scaffold_72 . exon 152556 153287 . + . ID=Phyra82458.1;Parent=Phyra82458;constitutive=1;rank=1 scaffold_72 . biological_region 159038 159041 0.999 + . logic_name=eponine scaffold_72 . biological_region 159047 159049 0.999 - . logic_name=eponine scaffold_72 . biological_region 159128 159130 0.999 + . logic_name=eponine scaffold_72 . biological_region 159716 159719 0.999 + . logic_name=eponine scaffold_72 . biological_region 159829 159832 0.999 + . logic_name=eponine scaffold_72 . biological_region 159934 159936 0.999 - . logic_name=eponine scaffold_72 . biological_region 160920 160925 0.999 + . logic_name=eponine scaffold_72 . biological_region 160931 160934 0.999 + . logic_name=eponine scaffold_72 . biological_region 161212 161219 0.999 + . logic_name=eponine scaffold_72 . biological_region 161256 161256 0.999 + . logic_name=eponine scaffold_72 . biological_region 161274 161278 0.999 + . logic_name=eponine scaffold_72 . biological_region 161649 161653 0.999 - . logic_name=eponine scaffold_72 . biological_region 161730 161735 0.999 + . logic_name=eponine scaffold_72 ensembl protein_coding_gene 154793 158520 . + . ID=Phyra82459;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000045;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 154793 158520 . + . ID=Phyra82459;Parent=Phyra82459;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 154793 155114 . + 0 ID=Phyra82459;Parent=Phyra82459;rank=1 scaffold_72 . exon 154793 155114 . + . ID=Phyra82459.1;Parent=Phyra82459;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . CDS 155286 156508 . + 0 ID=Phyra82459;Parent=Phyra82459;rank=2 scaffold_72 . exon 155286 156508 . + . ID=Phyra82459.2;Parent=Phyra82459;constitutive=1;ensembl_phase=1;rank=2 scaffold_72 . CDS 156575 156762 . + 0 ID=Phyra82459;Parent=Phyra82459;rank=3 scaffold_72 . exon 156575 156762 . + . ID=Phyra82459.3;Parent=Phyra82459;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_72 . CDS 157008 157041 . + 0 ID=Phyra82459;Parent=Phyra82459;rank=4 scaffold_72 . exon 157008 157041 . + . ID=Phyra82459.4;Parent=Phyra82459;constitutive=1;ensembl_phase=2;rank=4 scaffold_72 . CDS 157183 158520 . + 0 ID=Phyra82459;Parent=Phyra82459;rank=5 scaffold_72 . exon 157183 158520 . + . ID=Phyra82459.5;Parent=Phyra82459;constitutive=1;rank=5 scaffold_72 ensembl protein_coding_gene 158798 159958 . - . ID=Phyra82460;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000046;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 158798 159958 . - . ID=Phyra82460;Parent=Phyra82460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 158798 159958 . - 0 ID=Phyra82460;Parent=Phyra82460;rank=1 scaffold_72 . exon 158798 159958 . - . ID=Phyra82460.1;Parent=Phyra82460;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 160664 161998 . - . ID=Phyra82461;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000047;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 160664 161998 . - . ID=Phyra82461;Parent=Phyra82461;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 160664 161998 . - 0 ID=Phyra82461;Parent=Phyra82461;rank=1 scaffold_72 . exon 160664 161998 . - . ID=Phyra82461.1;Parent=Phyra82461;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 162342 169214 . + . ID=Phyra82462;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000048;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 162342 169214 . + . ID=Phyra82462;Parent=Phyra82462;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 162342 169214 . + 0 ID=Phyra82462;Parent=Phyra82462;rank=1 scaffold_72 . exon 162342 169214 . + . ID=Phyra82462.1;Parent=Phyra82462;constitutive=1;rank=1 scaffold_72 . repeat_region 173813 173823 . ? . description=dust scaffold_72 ensembl protein_coding_gene 169496 171100 . - . ID=Phyra96342;biotype=protein_coding;external_name=C_scaffold_72000017;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 169496 171100 . - . ID=Phyra96342;Parent=Phyra96342;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 169496 169762 . - 0 ID=Phyra96342;Parent=Phyra96342;rank=6 scaffold_72 . exon 169496 169762 . - . ID=Phyra96342.6;Parent=Phyra96342;constitutive=1;rank=6 scaffold_72 . CDS 169826 169996 . - 0 ID=Phyra96342;Parent=Phyra96342;rank=5 scaffold_72 . exon 169826 169996 . - . ID=Phyra96342.5;Parent=Phyra96342;constitutive=1;rank=5 scaffold_72 . CDS 170075 170419 . - 0 ID=Phyra96342;Parent=Phyra96342;rank=4 scaffold_72 . exon 170075 170419 . - . ID=Phyra96342.4;Parent=Phyra96342;constitutive=1;rank=4 scaffold_72 . CDS 170456 170544 . - 0 ID=Phyra96342;Parent=Phyra96342;rank=3 scaffold_72 . exon 170456 170544 . - . ID=Phyra96342.3;Parent=Phyra96342;constitutive=1;ensembl_phase=1;rank=3 scaffold_72 . CDS 170587 170696 . - 0 ID=Phyra96342;Parent=Phyra96342;rank=2 scaffold_72 . exon 170587 170696 . - . ID=Phyra96342.2;Parent=Phyra96342;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_72 . CDS 170772 171100 . - 0 ID=Phyra96342;Parent=Phyra96342;rank=1 scaffold_72 . exon 170772 171100 . - . ID=Phyra96342.1;Parent=Phyra96342;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 ensembl protein_coding_gene 171736 173554 . + . ID=Phyra96345;biotype=protein_coding;external_name=C_scaffold_72000020;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 171736 173554 . + . ID=Phyra96345;Parent=Phyra96345;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 171736 172000 . + 0 ID=Phyra96345;Parent=Phyra96345;rank=1 scaffold_72 . exon 171736 172000 . + . ID=Phyra96345.1;Parent=Phyra96345;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . CDS 172085 172243 . + 0 ID=Phyra96345;Parent=Phyra96345;rank=2 scaffold_72 . exon 172085 172243 . + . ID=Phyra96345.2;Parent=Phyra96345;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_72 . CDS 172311 172442 . + 0 ID=Phyra96345;Parent=Phyra96345;rank=3 scaffold_72 . exon 172311 172442 . + . ID=Phyra96345.3;Parent=Phyra96345;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_72 . CDS 172499 172633 . + 0 ID=Phyra96345;Parent=Phyra96345;rank=4 scaffold_72 . exon 172499 172633 . + . ID=Phyra96345.4;Parent=Phyra96345;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_72 . CDS 172706 172861 . + 0 ID=Phyra96345;Parent=Phyra96345;rank=5 scaffold_72 . exon 172706 172861 . + . ID=Phyra96345.5;Parent=Phyra96345;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_72 . CDS 173175 173351 . + 0 ID=Phyra96345;Parent=Phyra96345;rank=6 scaffold_72 . exon 173175 173351 . + . ID=Phyra96345.6;Parent=Phyra96345;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_72 . CDS 173418 173554 . + 0 ID=Phyra96345;Parent=Phyra96345;rank=7 scaffold_72 . exon 173418 173554 . + . ID=Phyra96345.7;Parent=Phyra96345;constitutive=1;ensembl_phase=1;rank=7 scaffold_72 . repeat_region 176968 177002 . ? . description=trf scaffold_72 ensembl pseudogene 174629 174799 . + . ID=Phyra52748;biotype=pseudogene;external_name=gwEuk.72.110.1;logic_name=jgi_phyra1 scaffold_72 ensembl pseudogene 174629 174799 . + . ID=Phyra52748;Parent=Phyra52748;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_72 . exon 174629 174799 . + . ID=Phyra52748.1;Parent=Phyra52748;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 175567 176550 . - . ID=Phyra82465;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000051;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 175567 176550 . - . ID=Phyra82465;Parent=Phyra82465;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 175567 176550 . - 0 ID=Phyra82465;Parent=Phyra82465;rank=1 scaffold_72 . exon 175567 176550 . - . ID=Phyra82465.1;Parent=Phyra82465;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 177001 177497 . + . ID=Phyra82466;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000052;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 177001 177497 . + . ID=Phyra82466;Parent=Phyra82466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 177001 177034 . + 0 ID=Phyra82466;Parent=Phyra82466;rank=1 scaffold_72 . exon 177001 177034 . + . ID=Phyra82466.1;Parent=Phyra82466;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . CDS 177075 177201 . + 0 ID=Phyra82466;Parent=Phyra82466;rank=2 scaffold_72 . exon 177075 177201 . + . ID=Phyra82466.2;Parent=Phyra82466;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_72 . CDS 177332 177497 . + 0 ID=Phyra82466;Parent=Phyra82466;rank=3 scaffold_72 . exon 177332 177497 . + . ID=Phyra82466.3;Parent=Phyra82466;constitutive=1;ensembl_phase=2;rank=3 scaffold_72 ensembl protein_coding_gene 177827 179075 . - . ID=Phyra82467;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000053;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 177827 179075 . - . ID=Phyra82467;Parent=Phyra82467;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 177827 178131 . - 0 ID=Phyra82467;Parent=Phyra82467;rank=4 scaffold_72 . exon 177827 178131 . - . ID=Phyra82467.4;Parent=Phyra82467;constitutive=1;ensembl_phase=1;rank=4 scaffold_72 . CDS 178156 178228 . - 0 ID=Phyra82467;Parent=Phyra82467;rank=3 scaffold_72 . exon 178156 178228 . - . ID=Phyra82467.3;Parent=Phyra82467;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_72 . CDS 178345 178455 . - 0 ID=Phyra82467;Parent=Phyra82467;rank=2 scaffold_72 . exon 178345 178455 . - . ID=Phyra82467.2;Parent=Phyra82467;constitutive=1;rank=2 scaffold_72 . CDS 178824 179075 . - 0 ID=Phyra82467;Parent=Phyra82467;rank=1 scaffold_72 . exon 178824 179075 . - . ID=Phyra82467.1;Parent=Phyra82467;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 180549 182222 . + . ID=Phyra82468;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000054;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 180549 182222 . + . ID=Phyra82468;Parent=Phyra82468;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 180549 182222 . + 0 ID=Phyra82468;Parent=Phyra82468;rank=1 scaffold_72 . exon 180549 182222 . + . ID=Phyra82468.1;Parent=Phyra82468;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 182341 183006 . + . ID=Phyra82469;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000055;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 182341 183006 . + . ID=Phyra82469;Parent=Phyra82469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 182341 183006 . + 0 ID=Phyra82469;Parent=Phyra82469;rank=1 scaffold_72 . exon 182341 183006 . + . ID=Phyra82469.1;Parent=Phyra82469;constitutive=1;rank=1 scaffold_72 . biological_region 187678 187685 0.999 - . logic_name=eponine scaffold_72 . biological_region 187879 187879 0.999 - . logic_name=eponine scaffold_72 ensembl protein_coding_gene 184139 185741 . + . ID=Phyra82470;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000056;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 184139 185741 . + . ID=Phyra82470;Parent=Phyra82470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 184139 185654 . + 0 ID=Phyra82470;Parent=Phyra82470;rank=1 scaffold_72 . exon 184139 185654 . + . ID=Phyra82470.1;Parent=Phyra82470;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . CDS 185695 185741 . + 0 ID=Phyra82470;Parent=Phyra82470;rank=2 scaffold_72 . exon 185695 185741 . + . ID=Phyra82470.2;Parent=Phyra82470;constitutive=1;ensembl_phase=1;rank=2 scaffold_72 ensembl protein_coding_gene 185912 188045 . - . ID=Phyra82471;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000057;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 185912 188045 . - . ID=Phyra82471;Parent=Phyra82471;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 185912 186951 . - 0 ID=Phyra82471;Parent=Phyra82471;rank=4 scaffold_72 . exon 185912 186951 . - . ID=Phyra82471.4;Parent=Phyra82471;constitutive=1;ensembl_phase=1;rank=4 scaffold_72 . CDS 187102 187165 . - 0 ID=Phyra82471;Parent=Phyra82471;rank=3 scaffold_72 . exon 187102 187165 . - . ID=Phyra82471.3;Parent=Phyra82471;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_72 . CDS 187232 187369 . - 0 ID=Phyra82471;Parent=Phyra82471;rank=2 scaffold_72 . exon 187232 187369 . - . ID=Phyra82471.2;Parent=Phyra82471;constitutive=1;rank=2 scaffold_72 . CDS 187437 188045 . - 0 ID=Phyra82471;Parent=Phyra82471;rank=1 scaffold_72 . exon 187437 188045 . - . ID=Phyra82471.1;Parent=Phyra82471;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 190820 192490 . - . ID=Phyra82472;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000058;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 190820 192490 . - . ID=Phyra82472;Parent=Phyra82472;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 190820 192490 . - 0 ID=Phyra82472;Parent=Phyra82472;rank=1 scaffold_72 . exon 190820 192490 . - . ID=Phyra82472.1;Parent=Phyra82472;constitutive=1;rank=1 scaffold_72 . repeat_region 201767 201799 . ? . description=trf scaffold_72 ensembl protein_coding_gene 194487 195620 . + . ID=Phyra82473;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000059;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 194487 195620 . + . ID=Phyra82473;Parent=Phyra82473;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 194487 194872 . + 0 ID=Phyra82473;Parent=Phyra82473;rank=1 scaffold_72 . exon 194487 194872 . + . ID=Phyra82473.1;Parent=Phyra82473;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 . CDS 194938 195247 . + 0 ID=Phyra82473;Parent=Phyra82473;rank=2 scaffold_72 . exon 194938 195247 . + . ID=Phyra82473.2;Parent=Phyra82473;constitutive=1;ensembl_phase=2;rank=2 scaffold_72 . CDS 195387 195620 . + 0 ID=Phyra82473;Parent=Phyra82473;rank=3 scaffold_72 . exon 195387 195620 . + . ID=Phyra82473.3;Parent=Phyra82473;constitutive=1;rank=3 scaffold_72 ensembl protein_coding_gene 195868 196833 . - . ID=Phyra82474;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000060;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 195868 196833 . - . ID=Phyra82474;Parent=Phyra82474;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 195868 196833 . - 0 ID=Phyra82474;Parent=Phyra82474;rank=1 scaffold_72 . exon 195868 196833 . - . ID=Phyra82474.1;Parent=Phyra82474;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 198594 200288 . + . ID=Phyra82475;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000061;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 198594 200288 . + . ID=Phyra82475;Parent=Phyra82475;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 198594 199412 . + 0 ID=Phyra82475;Parent=Phyra82475;rank=1 scaffold_72 . exon 198594 199412 . + . ID=Phyra82475.1;Parent=Phyra82475;constitutive=1;rank=1 scaffold_72 . CDS 199456 200044 . + 0 ID=Phyra82475;Parent=Phyra82475;rank=2 scaffold_72 . exon 199456 200044 . + . ID=Phyra82475.2;Parent=Phyra82475;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_72 . CDS 200266 200288 . + 0 ID=Phyra82475;Parent=Phyra82475;rank=3 scaffold_72 . exon 200266 200288 . + . ID=Phyra82475.3;Parent=Phyra82475;constitutive=1;ensembl_phase=1;rank=3 scaffold_72 ensembl protein_coding_gene 200446 201579 . - . ID=Phyra82476;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000062;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 200446 201579 . - . ID=Phyra82476;Parent=Phyra82476;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 200446 201579 . - 0 ID=Phyra82476;Parent=Phyra82476;rank=1 scaffold_72 . exon 200446 201579 . - . ID=Phyra82476.1;Parent=Phyra82476;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 201926 204019 . + . ID=Phyra82477;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000063;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 201926 204019 . + . ID=Phyra82477;Parent=Phyra82477;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 201926 204019 . + 0 ID=Phyra82477;Parent=Phyra82477;rank=1 scaffold_72 . exon 201926 204019 . + . ID=Phyra82477.1;Parent=Phyra82477;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 207597 208329 . - . ID=Phyra72022;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_72000007;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 207597 208329 . - . ID=Phyra72022;Parent=Phyra72022;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 207597 207620 . - 0 ID=Phyra72022;Parent=Phyra72022;rank=2 scaffold_72 . exon 207597 207620 . - . ID=Phyra72022.2;Parent=Phyra72022;constitutive=1;rank=2 scaffold_72 . CDS 207688 208329 . - 0 ID=Phyra72022;Parent=Phyra72022;rank=1 scaffold_72 . exon 207688 208329 . - . ID=Phyra72022.1;Parent=Phyra72022;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 204156 207441 . - . ID=Phyra82478;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000064;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 204156 207441 . - . ID=Phyra82478;Parent=Phyra82478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 204156 204213 . - 0 ID=Phyra82478;Parent=Phyra82478;rank=3 scaffold_72 . exon 204156 204213 . - . ID=Phyra82478.3;Parent=Phyra82478;constitutive=1;ensembl_phase=2;rank=3 scaffold_72 . CDS 204286 204429 . - 0 ID=Phyra82478;Parent=Phyra82478;rank=2 scaffold_72 . exon 204286 204429 . - . ID=Phyra82478.2;Parent=Phyra82478;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_72 . CDS 204494 207441 . - 0 ID=Phyra82478;Parent=Phyra82478;rank=1 scaffold_72 . exon 204494 207441 . - . ID=Phyra82478.1;Parent=Phyra82478;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 ensembl protein_coding_gene 208678 209244 . - . ID=Phyra82480;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000066;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 208678 209244 . - . ID=Phyra82480;Parent=Phyra82480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 208678 209244 . - 0 ID=Phyra82480;Parent=Phyra82480;rank=1 scaffold_72 . exon 208678 209244 . - . ID=Phyra82480.1;Parent=Phyra82480;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 210546 213011 . + . ID=Phyra82481;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000067;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 210546 213011 . + . ID=Phyra82481;Parent=Phyra82481;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 210546 210633 . + 0 ID=Phyra82481;Parent=Phyra82481;rank=1 scaffold_72 . exon 210546 210633 . + . ID=Phyra82481.1;Parent=Phyra82481;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . CDS 210745 210852 . + 0 ID=Phyra82481;Parent=Phyra82481;rank=2 scaffold_72 . exon 210745 210852 . + . ID=Phyra82481.2;Parent=Phyra82481;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_72 . CDS 210918 211018 . + 0 ID=Phyra82481;Parent=Phyra82481;rank=3 scaffold_72 . exon 210918 211018 . + . ID=Phyra82481.3;Parent=Phyra82481;constitutive=1;ensembl_phase=1;rank=3 scaffold_72 . CDS 211090 211254 . + 0 ID=Phyra82481;Parent=Phyra82481;rank=4 scaffold_72 . exon 211090 211254 . + . ID=Phyra82481.4;Parent=Phyra82481;constitutive=1;rank=4 scaffold_72 . CDS 211350 211414 . + 0 ID=Phyra82481;Parent=Phyra82481;rank=5 scaffold_72 . exon 211350 211414 . + . ID=Phyra82481.5;Parent=Phyra82481;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_72 . CDS 211501 212134 . + 0 ID=Phyra82481;Parent=Phyra82481;rank=6 scaffold_72 . exon 211501 212134 . + . ID=Phyra82481.6;Parent=Phyra82481;constitutive=1;ensembl_phase=2;rank=6 scaffold_72 . CDS 212205 212293 . + 0 ID=Phyra82481;Parent=Phyra82481;rank=7 scaffold_72 . exon 212205 212293 . + . ID=Phyra82481.7;Parent=Phyra82481;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_72 . CDS 212375 212540 . + 0 ID=Phyra82481;Parent=Phyra82481;rank=8 scaffold_72 . exon 212375 212540 . + . ID=Phyra82481.8;Parent=Phyra82481;constitutive=1;ensembl_phase=2;rank=8 scaffold_72 . CDS 212619 212747 . + 0 ID=Phyra82481;Parent=Phyra82481;rank=9 scaffold_72 . CDS 212826 212900 . + 0 ID=Phyra82481;Parent=Phyra82481;rank=10 scaffold_72 . CDS 212994 213011 . + 0 ID=Phyra82481;Parent=Phyra82481;rank=11 scaffold_72 . biological_region 213652 213655 0.999 + . logic_name=eponine scaffold_72 . biological_region 214986 214990 0.999 + . logic_name=eponine scaffold_72 . repeat_region 216227 216242 . ? . description=dust scaffold_72 . repeat_region 217702 217760 . ? . description=trf scaffold_72 . repeat_region 221160 221167 . ? . description=dust scaffold_72 ensembl pseudogene 214227 214578 . + . ID=Phyra52656;biotype=pseudogene;external_name=gwEuk.72.18.1;logic_name=jgi_phyra1 scaffold_72 ensembl pseudogene 214227 214578 . + . ID=Phyra52656;Parent=Phyra52656;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_72 . exon 214227 214578 . + . ID=Phyra52656.1;Parent=Phyra52656;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 ensembl protein_coding_gene 214673 215600 . - . ID=Phyra72024;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_72000009;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 214673 215600 . - . ID=Phyra72024;Parent=Phyra72024;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 214673 214956 . - 0 ID=Phyra72024;Parent=Phyra72024;rank=5 scaffold_72 . exon 214673 214956 . - . ID=Phyra72024.5;Parent=Phyra72024;constitutive=1;ensembl_phase=1;rank=5 scaffold_72 . CDS 215025 215151 . - 0 ID=Phyra72024;Parent=Phyra72024;rank=4 scaffold_72 . exon 215025 215151 . - . ID=Phyra72024.4;Parent=Phyra72024;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_72 . CDS 215208 215296 . - 0 ID=Phyra72024;Parent=Phyra72024;rank=3 scaffold_72 . exon 215208 215296 . - . ID=Phyra72024.3;Parent=Phyra72024;constitutive=1;ensembl_phase=1;rank=3 scaffold_72 . CDS 215355 215484 . - 0 ID=Phyra72024;Parent=Phyra72024;rank=2 scaffold_72 . exon 215355 215484 . - . ID=Phyra72024.2;Parent=Phyra72024;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_72 . CDS 215547 215600 . - 0 ID=Phyra72024;Parent=Phyra72024;rank=1 scaffold_72 . exon 215547 215600 . - . ID=Phyra72024.1;Parent=Phyra72024;constitutive=1;rank=1 scaffold_72 . exon 212619 212747 . + . ID=Phyra82481.9;Parent=Phyra82481;constitutive=1;rank=9 scaffold_72 . exon 212826 212900 . + . ID=Phyra82481.10;Parent=Phyra82481;constitutive=1;rank=10 scaffold_72 . exon 212994 213011 . + . ID=Phyra82481.11;Parent=Phyra82481;constitutive=1;rank=11 scaffold_72 ensembl protein_coding_gene 213221 213854 . - . ID=Phyra82482;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000068;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 213221 213854 . - . ID=Phyra82482;Parent=Phyra82482;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 213221 213586 . - 0 ID=Phyra82482;Parent=Phyra82482;rank=2 scaffold_72 . exon 213221 213586 . - . ID=Phyra82482.2;Parent=Phyra82482;constitutive=1;rank=2 scaffold_72 . CDS 213843 213854 . - 0 ID=Phyra82482;Parent=Phyra82482;rank=1 scaffold_72 . exon 213843 213854 . - . ID=Phyra82482.1;Parent=Phyra82482;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 216946 217968 . + . ID=Phyra82485;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000071;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 216946 217968 . + . ID=Phyra82485;Parent=Phyra82485;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 216946 217968 . + 0 ID=Phyra82485;Parent=Phyra82485;rank=1 scaffold_72 . exon 216946 217968 . + . ID=Phyra82485.1;Parent=Phyra82485;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 229312 230364 . - . ID=Phyra52668;biotype=protein_coding;external_name=gwEuk.72.30.1;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 229312 230364 . - . ID=Phyra52668;Parent=Phyra52668;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 229312 229581 . - 0 ID=Phyra52668;Parent=Phyra52668;rank=4 scaffold_72 . exon 229312 229581 . - . ID=Phyra52668.4;Parent=Phyra52668;constitutive=1;rank=4 scaffold_72 . CDS 229637 229711 . - 0 ID=Phyra52668;Parent=Phyra52668;rank=3 scaffold_72 . exon 229637 229711 . - . ID=Phyra52668.3;Parent=Phyra52668;constitutive=1;rank=3 scaffold_72 . CDS 229769 229852 . - 0 ID=Phyra52668;Parent=Phyra52668;rank=2 scaffold_72 . exon 229769 229852 . - . ID=Phyra52668.2;Parent=Phyra52668;constitutive=1;rank=2 scaffold_72 . CDS 229909 230364 . - 0 ID=Phyra52668;Parent=Phyra52668;rank=1 scaffold_72 . exon 229909 230364 . - . ID=Phyra52668.1;Parent=Phyra52668;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 227240 229037 . + . ID=Phyra72025;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_72000010;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 227240 229037 . + . ID=Phyra72025;Parent=Phyra72025;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 227240 227853 . + 0 ID=Phyra72025;Parent=Phyra72025;rank=1 scaffold_72 . exon 227240 227853 . + . ID=Phyra72025.1;Parent=Phyra72025;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 . CDS 227916 228044 . + 0 ID=Phyra72025;Parent=Phyra72025;rank=2 scaffold_72 . exon 227916 228044 . + . ID=Phyra72025.2;Parent=Phyra72025;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_72 . CDS 228114 228229 . + 0 ID=Phyra72025;Parent=Phyra72025;rank=3 scaffold_72 . exon 228114 228229 . + . ID=Phyra72025.3;Parent=Phyra72025;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_72 . CDS 228310 228394 . + 0 ID=Phyra72025;Parent=Phyra72025;rank=4 scaffold_72 . exon 228310 228394 . + . ID=Phyra72025.4;Parent=Phyra72025;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_72 . CDS 228470 229037 . + 0 ID=Phyra72025;Parent=Phyra72025;rank=5 scaffold_72 . exon 228470 229037 . + . ID=Phyra72025.5;Parent=Phyra72025;constitutive=1;ensembl_phase=2;rank=5 scaffold_72 ensembl protein_coding_gene 223395 224200 . + . ID=Phyra82486;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000072;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 223395 224200 . + . ID=Phyra82486;Parent=Phyra82486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 223395 224156 . + 0 ID=Phyra82486;Parent=Phyra82486;rank=1 scaffold_72 . exon 223395 224156 . + . ID=Phyra82486.1;Parent=Phyra82486;constitutive=1;rank=1 scaffold_72 . CDS 224198 224200 . + 0 ID=Phyra82486;Parent=Phyra82486;rank=2 scaffold_72 . exon 224198 224200 . + . ID=Phyra82486.2;Parent=Phyra82486;constitutive=1;rank=2 scaffold_72 ensembl protein_coding_gene 224506 227005 . - . ID=Phyra82487;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000073;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 224506 227005 . - . ID=Phyra82487;Parent=Phyra82487;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 224506 226094 . - 0 ID=Phyra82487;Parent=Phyra82487;rank=2 scaffold_72 . exon 224506 226094 . - . ID=Phyra82487.2;Parent=Phyra82487;constitutive=1;ensembl_phase=1;rank=2 scaffold_72 . CDS 226162 227005 . - 0 ID=Phyra82487;Parent=Phyra82487;rank=1 scaffold_72 . exon 226162 227005 . - . ID=Phyra82487.1;Parent=Phyra82487;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . biological_region 233269 233272 0.999 + . logic_name=eponine scaffold_72 . biological_region 233303 233304 0.999 + . logic_name=eponine scaffold_72 . biological_region 233637 233641 0.999 + . logic_name=eponine scaffold_72 . repeat_region 233680 233703 . ? . description=trf scaffold_72 . repeat_region 233756 233763 . ? . description=dust scaffold_72 . repeat_region 234068 234075 . ? . description=dust scaffold_72 . repeat_region 234269 234286 . ? . description=dust scaffold_72 . repeat_region 235984 236044 . ? . description=trf scaffold_72 . repeat_region 235984 236044 . ? . description=trf scaffold_72 ensembl protein_coding_gene 234228 236381 . + . ID=Phyra82490;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000076;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 234228 236381 . + . ID=Phyra82490;Parent=Phyra82490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 234228 234263 . + 0 ID=Phyra82490;Parent=Phyra82490;rank=1 scaffold_72 . exon 234228 234263 . + . ID=Phyra82490.1;Parent=Phyra82490;constitutive=1;rank=1 scaffold_72 . CDS 234384 236381 . + 0 ID=Phyra82490;Parent=Phyra82490;rank=2 scaffold_72 . exon 234384 236381 . + . ID=Phyra82490.2;Parent=Phyra82490;constitutive=1;rank=2 scaffold_72 ensembl protein_coding_gene 236707 238200 . - . ID=Phyra96356;biotype=protein_coding;external_name=C_scaffold_72000031;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 236707 238200 . - . ID=Phyra96356;Parent=Phyra96356;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 236707 237033 . - 0 ID=Phyra96356;Parent=Phyra96356;rank=3 scaffold_72 . exon 236707 237033 . - . ID=Phyra96356.3;Parent=Phyra96356;constitutive=1;rank=3 scaffold_72 . CDS 237055 238044 . - 0 ID=Phyra96356;Parent=Phyra96356;rank=2 scaffold_72 . exon 237055 238044 . - . ID=Phyra96356.2;Parent=Phyra96356;constitutive=1;rank=2 scaffold_72 . CDS 238177 238200 . - 0 ID=Phyra96356;Parent=Phyra96356;rank=1 scaffold_72 . exon 238177 238200 . - . ID=Phyra96356.1;Parent=Phyra96356;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 245701 246732 . - . ID=Phyra72026;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_72000011;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 245701 246732 . - . ID=Phyra72026;Parent=Phyra72026;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 245701 246732 . - 0 ID=Phyra72026;Parent=Phyra72026;rank=1 scaffold_72 . exon 245701 246732 . - . ID=Phyra72026.1;Parent=Phyra72026;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 248824 249879 . + . ID=Phyra82493;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000079;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 248824 249879 . + . ID=Phyra82493;Parent=Phyra82493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 248824 249879 . + 0 ID=Phyra82493;Parent=Phyra82493;rank=1 scaffold_72 . exon 248824 249879 . + . ID=Phyra82493.1;Parent=Phyra82493;constitutive=1;rank=1 scaffold_72 . biological_region 254596 254601 0.999 - . logic_name=eponine scaffold_72 . biological_region 255171 255174 0.999 + . logic_name=eponine scaffold_72 . biological_region 255245 255246 0.999 - . logic_name=eponine scaffold_72 . biological_region 257629 257636 0.999 - . logic_name=eponine scaffold_72 . biological_region 258864 258868 0.999 + . logic_name=eponine scaffold_72 . biological_region 260821 260823 0.999 - . logic_name=eponine scaffold_72 ensembl protein_coding_gene 252242 253642 . + . ID=Phyra82494;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000080;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 252242 253642 . + . ID=Phyra82494;Parent=Phyra82494;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 252242 253642 . + 0 ID=Phyra82494;Parent=Phyra82494;rank=1 scaffold_72 . exon 252242 253642 . + . ID=Phyra82494.1;Parent=Phyra82494;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 259505 262345 . - . ID=Phyra82497;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000083;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 259505 262345 . - . ID=Phyra82497;Parent=Phyra82497;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 259505 262345 . - 0 ID=Phyra82497;Parent=Phyra82497;rank=1 scaffold_72 . exon 259505 262345 . - . ID=Phyra82497.1;Parent=Phyra82497;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 254334 255302 . + . ID=Phyra96357;biotype=protein_coding;external_name=C_scaffold_72000032;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 254334 255302 . + . ID=Phyra96357;Parent=Phyra96357;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 254334 255302 . + 0 ID=Phyra96357;Parent=Phyra96357;rank=1 scaffold_72 . exon 254334 255302 . + . ID=Phyra96357.1;Parent=Phyra96357;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 255862 259404 . + . ID=Phyra96358;biotype=protein_coding;external_name=C_scaffold_72000033;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 255862 259404 . + . ID=Phyra96358;Parent=Phyra96358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 255862 256503 . + 0 ID=Phyra96358;Parent=Phyra96358;rank=1 scaffold_72 . exon 255862 256503 . + . ID=Phyra96358.1;Parent=Phyra96358;constitutive=1;rank=1 scaffold_72 . CDS 257266 257928 . + 0 ID=Phyra96358;Parent=Phyra96358;rank=2 scaffold_72 . exon 257266 257928 . + . ID=Phyra96358.2;Parent=Phyra96358;constitutive=1;rank=2 scaffold_72 . CDS 257986 258121 . + 0 ID=Phyra96358;Parent=Phyra96358;rank=3 scaffold_72 . exon 257986 258121 . + . ID=Phyra96358.3;Parent=Phyra96358;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_72 . CDS 258560 259101 . + 0 ID=Phyra96358;Parent=Phyra96358;rank=4 scaffold_72 . exon 258560 259101 . + . ID=Phyra96358.4;Parent=Phyra96358;constitutive=1;ensembl_phase=1;rank=4 scaffold_72 . CDS 259126 259404 . + 0 ID=Phyra96358;Parent=Phyra96358;rank=5 scaffold_72 . exon 259126 259404 . + . ID=Phyra96358.5;Parent=Phyra96358;constitutive=1;rank=5 scaffold_72 . repeat_region 260935 260989 . + . description=(TCG)n scaffold_72 . repeat_region 261133 261185 . ? . description=trf scaffold_72 . repeat_region 265732 265752 . ? . description=dust scaffold_72 . repeat_region 265734 265754 . ? . description=trf scaffold_72 . repeat_region 270497 270505 . ? . description=dust scaffold_72 ensembl protein_coding_gene 263341 265017 . + . ID=Phyra82498;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000084;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 263341 265017 . + . ID=Phyra82498;Parent=Phyra82498;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 263341 265017 . + 0 ID=Phyra82498;Parent=Phyra82498;rank=1 scaffold_72 . exon 263341 265017 . + . ID=Phyra82498.1;Parent=Phyra82498;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 265942 266364 . + . ID=Phyra82499;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000085;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 265942 266364 . + . ID=Phyra82499;Parent=Phyra82499;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 265942 266364 . + 0 ID=Phyra82499;Parent=Phyra82499;rank=1 scaffold_72 . exon 265942 266364 . + . ID=Phyra82499.1;Parent=Phyra82499;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 266901 268256 . + . ID=Phyra82500;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_72000086;logic_name=jgi_phyra1 scaffold_72 ensembl transcript 266901 268256 . + . ID=Phyra82500;Parent=Phyra82500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_72 . CDS 266901 268256 . + 0 ID=Phyra82500;Parent=Phyra82500;rank=1 scaffold_72 . exon 266901 268256 . + . ID=Phyra82500.1;Parent=Phyra82500;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_71 1 271600 scaffold_71 . repeat_region 289 387 . ? . description=dust scaffold_71 . repeat_region 301 387 . ? . description=trf scaffold_71 . repeat_region 675 731 . ? . description=trf scaffold_71 . repeat_region 676 730 . ? . description=trf scaffold_71 . repeat_region 1027 1076 . ? . description=dust scaffold_71 . biological_region 1246 1251 0.999 + . logic_name=eponine scaffold_71 . biological_region 1913 1919 0.999 - . logic_name=eponine scaffold_71 . repeat_region 2003 2064 . ? . description=trf scaffold_71 . repeat_region 2009 2067 . ? . description=trf scaffold_71 . biological_region 2298 2302 0.999 - . logic_name=eponine scaffold_71 . repeat_region 3778 3827 . ? . description=trf scaffold_71 . repeat_region 4521 4547 . ? . description=trf scaffold_71 . repeat_region 6502 6674 . ? . description=dust scaffold_71 . repeat_region 8178 8227 . ? . description=dust scaffold_71 ensembl protein_coding_gene 614 2287 . - . ID=Phyra82362;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000001;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 614 2287 . - . ID=Phyra82362;Parent=Phyra82362;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 614 655 . - 0 ID=Phyra82362;Parent=Phyra82362;rank=3 scaffold_71 . exon 614 655 . - . ID=Phyra82362.3;Parent=Phyra82362;constitutive=1;rank=3 scaffold_71 . CDS 1096 1812 . - 0 ID=Phyra82362;Parent=Phyra82362;rank=2 scaffold_71 . exon 1096 1812 . - . ID=Phyra82362.2;Parent=Phyra82362;constitutive=1;rank=2 scaffold_71 . CDS 1856 2287 . - 0 ID=Phyra82362;Parent=Phyra82362;rank=1 scaffold_71 . exon 1856 2287 . - . ID=Phyra82362.1;Parent=Phyra82362;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 13909 14472 . + . ID=Phyra82363;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000002;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 13909 14472 . + . ID=Phyra82363;Parent=Phyra82363;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 13909 14472 . + 0 ID=Phyra82363;Parent=Phyra82363;rank=1 scaffold_71 . exon 13909 14472 . + . ID=Phyra82363.1;Parent=Phyra82363;constitutive=1;rank=1 scaffold_71 . repeat_region 14713 24084 . ? . description=dust scaffold_71 . repeat_region 24906 24935 . ? . description=trf scaffold_71 . repeat_region 25494 30004 . ? . description=dust scaffold_71 ensembl protein_coding_gene 24704 25279 . - . ID=Phyra82364;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000003;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 24704 25279 . - . ID=Phyra82364;Parent=Phyra82364;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 24704 25279 . - 0 ID=Phyra82364;Parent=Phyra82364;rank=1 scaffold_71 . exon 24704 25279 . - . ID=Phyra82364.1;Parent=Phyra82364;constitutive=1;rank=1 scaffold_71 . biological_region 30600 30604 0.999 - . logic_name=eponine scaffold_71 . biological_region 30954 30958 0.999 - . logic_name=eponine scaffold_71 ensembl protein_coding_gene 30197 30943 . - . ID=Phyra82365;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000004;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 30197 30943 . - . ID=Phyra82365;Parent=Phyra82365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 30197 30943 . - 0 ID=Phyra82365;Parent=Phyra82365;rank=1 scaffold_71 . exon 30197 30943 . - . ID=Phyra82365.1;Parent=Phyra82365;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 34775 36487 . - . ID=Phyra82366;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000005;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 34775 36487 . - . ID=Phyra82366;Parent=Phyra82366;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 34775 36487 . - 0 ID=Phyra82366;Parent=Phyra82366;rank=1 scaffold_71 . exon 34775 36487 . - . ID=Phyra82366.1;Parent=Phyra82366;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 38646 39017 . - . ID=Phyra82367;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000006;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 38646 39017 . - . ID=Phyra82367;Parent=Phyra82367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 38646 39017 . - 0 ID=Phyra82367;Parent=Phyra82367;rank=1 scaffold_71 . exon 38646 39017 . - . ID=Phyra82367.1;Parent=Phyra82367;constitutive=1;rank=1 scaffold_71 . repeat_region 39408 39519 . ? . description=dust scaffold_71 . repeat_region 42990 43323 . ? . description=dust scaffold_71 . repeat_region 43324 44144 . + . description=GypsyPi-1c_I-int scaffold_71 . repeat_region 44145 44683 . ? . description=dust scaffold_71 . repeat_region 44886 45194 . + . description=GypsyPi-1c_LTR scaffold_71 . repeat_region 45195 45710 . + . description=GypsyPi-1c_I-int scaffold_71 . repeat_region 45711 46787 . ? . description=dust scaffold_71 . repeat_region 46788 47180 . + . description=GypsyPi-1c_I-int scaffold_71 . repeat_region 47552 48229 . + . description=GypsyPi-1c_I-int scaffold_71 . repeat_region 48230 54162 . ? . description=dust scaffold_71 ensembl protein_coding_gene 39555 40502 . + . ID=Phyra82368;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000007;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 39555 40502 . + . ID=Phyra82368;Parent=Phyra82368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 39555 40502 . + 0 ID=Phyra82368;Parent=Phyra82368;rank=1 scaffold_71 . exon 39555 40502 . + . ID=Phyra82368.1;Parent=Phyra82368;constitutive=1;rank=1 scaffold_71 . biological_region 55373 55375 0.999 - . logic_name=eponine scaffold_71 . biological_region 56228 56232 0.999 - . logic_name=eponine scaffold_71 . biological_region 56494 56498 0.999 + . logic_name=eponine scaffold_71 . biological_region 56542 56542 0.999 - . logic_name=eponine scaffold_71 . biological_region 56574 56574 0.999 + . logic_name=eponine scaffold_71 . biological_region 56594 56601 0.999 + . logic_name=eponine scaffold_71 . biological_region 56610 56618 0.999 - . logic_name=eponine scaffold_71 ensembl protein_coding_gene 54499 56706 . - . ID=Phyra82369;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000008;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 54499 56706 . - . ID=Phyra82369;Parent=Phyra82369;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 54499 56706 . - 0 ID=Phyra82369;Parent=Phyra82369;rank=1 scaffold_71 . exon 54499 56706 . - . ID=Phyra82369.1;Parent=Phyra82369;constitutive=1;rank=1 scaffold_71 . repeat_region 62690 62729 . ? . description=trf scaffold_71 . repeat_region 67217 67347 . ? . description=trf scaffold_71 . repeat_region 67617 67635 . ? . description=dust scaffold_71 ensembl protein_coding_gene 59313 63408 . - . ID=Phyra82370;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000009;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 59313 63408 . - . ID=Phyra82370;Parent=Phyra82370;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 59313 63331 . - 0 ID=Phyra82370;Parent=Phyra82370;rank=2 scaffold_71 . exon 59313 63331 . - . ID=Phyra82370.2;Parent=Phyra82370;constitutive=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 63399 63408 . - 0 ID=Phyra82370;Parent=Phyra82370;rank=1 scaffold_71 . exon 63399 63408 . - . ID=Phyra82370.1;Parent=Phyra82370;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 ensembl protein_coding_gene 65503 66450 . + . ID=Phyra82371;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000010;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 65503 66450 . + . ID=Phyra82371;Parent=Phyra82371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 65503 66450 . + 0 ID=Phyra82371;Parent=Phyra82371;rank=1 scaffold_71 . exon 65503 66450 . + . ID=Phyra82371.1;Parent=Phyra82371;constitutive=1;rank=1 scaffold_71 . biological_region 68585 68587 0.999 + . logic_name=eponine scaffold_71 . biological_region 68990 68991 0.999 + . logic_name=eponine scaffold_71 . biological_region 69130 69134 0.999 + . logic_name=eponine scaffold_71 . biological_region 75605 75611 0.999 + . logic_name=eponine scaffold_71 . biological_region 75665 75671 0.999 + . logic_name=eponine scaffold_71 . biological_region 75691 75692 0.999 - . logic_name=eponine scaffold_71 . biological_region 75723 75728 0.999 + . logic_name=eponine scaffold_71 . biological_region 75739 75749 0.999 - . logic_name=eponine scaffold_71 . biological_region 75744 75748 0.999 + . logic_name=eponine scaffold_71 . biological_region 75833 75833 0.999 - . logic_name=eponine scaffold_71 ensembl protein_coding_gene 69080 75823 . + . ID=Phyra82372;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000011;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 69080 75823 . + . ID=Phyra82372;Parent=Phyra82372;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 69080 75823 . + 0 ID=Phyra82372;Parent=Phyra82372;rank=1 scaffold_71 . exon 69080 75823 . + . ID=Phyra82372.1;Parent=Phyra82372;constitutive=1;rank=1 scaffold_71 . repeat_region 79152 79164 . ? . description=dust scaffold_71 . repeat_region 84624 84640 . ? . description=dust scaffold_71 ensembl protein_coding_gene 77779 80624 . - . ID=Phyra82373;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000012;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 77779 80624 . - . ID=Phyra82373;Parent=Phyra82373;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 77779 78969 . - 0 ID=Phyra82373;Parent=Phyra82373;rank=3 scaffold_71 . exon 77779 78969 . - . ID=Phyra82373.3;Parent=Phyra82373;constitutive=1;rank=3 scaffold_71 . CDS 79036 79063 . - 0 ID=Phyra82373;Parent=Phyra82373;rank=2 scaffold_71 . exon 79036 79063 . - . ID=Phyra82373.2;Parent=Phyra82373;constitutive=1;ensembl_phase=2;rank=2 scaffold_71 . CDS 79423 80624 . - 0 ID=Phyra82373;Parent=Phyra82373;rank=1 scaffold_71 . exon 79423 80624 . - . ID=Phyra82373.1;Parent=Phyra82373;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_71 ensembl protein_coding_gene 81797 82630 . + . ID=Phyra82374;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000013;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 81797 82630 . + . ID=Phyra82374;Parent=Phyra82374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 81797 82630 . + 0 ID=Phyra82374;Parent=Phyra82374;rank=1 scaffold_71 . exon 81797 82630 . + . ID=Phyra82374.1;Parent=Phyra82374;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 85634 87050 . - . ID=Phyra82375;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000014;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 85634 87050 . - . ID=Phyra82375;Parent=Phyra82375;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 85634 85650 . - 0 ID=Phyra82375;Parent=Phyra82375;rank=2 scaffold_71 . exon 85634 85650 . - . ID=Phyra82375.2;Parent=Phyra82375;constitutive=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 85886 87050 . - 0 ID=Phyra82375;Parent=Phyra82375;rank=1 scaffold_71 . exon 85886 87050 . - . ID=Phyra82375.1;Parent=Phyra82375;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 . repeat_region 94886 94917 . ? . description=trf scaffold_71 ensembl protein_coding_gene 87766 89148 . - . ID=Phyra82376;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000015;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 87766 89148 . - . ID=Phyra82376;Parent=Phyra82376;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 87766 89148 . - 0 ID=Phyra82376;Parent=Phyra82376;rank=1 scaffold_71 . exon 87766 89148 . - . ID=Phyra82376.1;Parent=Phyra82376;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 91223 92872 . + . ID=Phyra82377;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000016;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 91223 92872 . + . ID=Phyra82377;Parent=Phyra82377;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 91223 92872 . + 0 ID=Phyra82377;Parent=Phyra82377;rank=1 scaffold_71 . exon 91223 92872 . + . ID=Phyra82377.1;Parent=Phyra82377;constitutive=1;rank=1 scaffold_71 . repeat_region 98551 111911 . ? . description=dust scaffold_71 . biological_region 113531 113535 0.999 + . logic_name=eponine scaffold_71 . biological_region 113590 113597 0.999 + . logic_name=eponine scaffold_71 . biological_region 113926 113931 0.999 + . logic_name=eponine scaffold_71 . biological_region 114181 114186 0.999 + . logic_name=eponine scaffold_71 . biological_region 114227 114230 0.999 + . logic_name=eponine scaffold_71 . biological_region 114336 114337 0.999 + . logic_name=eponine scaffold_71 . biological_region 114401 114401 0.999 + . logic_name=eponine scaffold_71 . biological_region 114758 114760 0.999 + . logic_name=eponine scaffold_71 . biological_region 115486 115489 0.999 + . logic_name=eponine scaffold_71 . repeat_region 116227 116282 . ? . description=trf scaffold_71 ensembl protein_coding_gene 114475 115947 . - . ID=Phyra82378;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000017;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 114475 115947 . - . ID=Phyra82378;Parent=Phyra82378;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 114475 115605 . - 0 ID=Phyra82378;Parent=Phyra82378;rank=2 scaffold_71 . exon 114475 115605 . - . ID=Phyra82378.2;Parent=Phyra82378;constitutive=1;rank=2 scaffold_71 . CDS 115633 115947 . - 0 ID=Phyra82378;Parent=Phyra82378;rank=1 scaffold_71 . exon 115633 115947 . - . ID=Phyra82378.1;Parent=Phyra82378;constitutive=1;rank=1 scaffold_71 . repeat_region 128411 128418 . ? . description=dust scaffold_71 . repeat_region 129745 129875 . + . description=GypsyPi-1c_LTR scaffold_71 . repeat_region 130060 130074 . ? . description=dust scaffold_71 . repeat_region 132225 132248 . ? . description=trf scaffold_71 ensembl protein_coding_gene 131532 132917 . + . ID=Phyra82379;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000018;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 131532 132917 . + . ID=Phyra82379;Parent=Phyra82379;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 131532 132917 . + 0 ID=Phyra82379;Parent=Phyra82379;rank=1 scaffold_71 . exon 131532 132917 . + . ID=Phyra82379.1;Parent=Phyra82379;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 133398 134360 . - . ID=Phyra82380;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000019;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 133398 134360 . - . ID=Phyra82380;Parent=Phyra82380;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 133398 134360 . - 0 ID=Phyra82380;Parent=Phyra82380;rank=1 scaffold_71 . exon 133398 134360 . - . ID=Phyra82380.1;Parent=Phyra82380;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 139404 140219 . - . ID=Phyra82381;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000020;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 139404 140219 . - . ID=Phyra82381;Parent=Phyra82381;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 139404 140219 . - 0 ID=Phyra82381;Parent=Phyra82381;rank=1 scaffold_71 . exon 139404 140219 . - . ID=Phyra82381.1;Parent=Phyra82381;constitutive=1;rank=1 scaffold_71 . repeat_region 143481 145595 . ? . description=dust scaffold_71 . repeat_region 147633 148334 . ? . description=dust scaffold_71 . repeat_region 150053 150366 . ? . description=dust scaffold_71 . biological_region 154441 154444 0.999 - . logic_name=eponine scaffold_71 . repeat_region 155056 155064 . ? . description=dust scaffold_71 . repeat_region 160903 160926 . ? . description=trf scaffold_71 ensembl protein_coding_gene 155296 155991 . + . ID=Phyra82382;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000021;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 155296 155991 . + . ID=Phyra82382;Parent=Phyra82382;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 155296 155991 . + 0 ID=Phyra82382;Parent=Phyra82382;rank=1 scaffold_71 . exon 155296 155991 . + . ID=Phyra82382.1;Parent=Phyra82382;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 157096 158082 . + . ID=Phyra82383;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000022;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 157096 158082 . + . ID=Phyra82383;Parent=Phyra82383;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 157096 158082 . + 0 ID=Phyra82383;Parent=Phyra82383;rank=1 scaffold_71 . exon 157096 158082 . + . ID=Phyra82383.1;Parent=Phyra82383;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 158207 158879 . - . ID=Phyra82384;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000023;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 158207 158879 . - . ID=Phyra82384;Parent=Phyra82384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 158207 158384 . - 0 ID=Phyra82384;Parent=Phyra82384;rank=2 scaffold_71 . exon 158207 158384 . - . ID=Phyra82384.2;Parent=Phyra82384;constitutive=1;ensembl_phase=2;rank=2 scaffold_71 . CDS 158458 158879 . - 0 ID=Phyra82384;Parent=Phyra82384;rank=1 scaffold_71 . exon 158458 158879 . - . ID=Phyra82384.1;Parent=Phyra82384;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_71 ensembl protein_coding_gene 158995 160771 . + . ID=Phyra82385;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000024;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 158995 160771 . + . ID=Phyra82385;Parent=Phyra82385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 158995 159284 . + 0 ID=Phyra82385;Parent=Phyra82385;rank=1 scaffold_71 . exon 158995 159284 . + . ID=Phyra82385.1;Parent=Phyra82385;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_71 . CDS 159353 159912 . + 0 ID=Phyra82385;Parent=Phyra82385;rank=2 scaffold_71 . exon 159353 159912 . + . ID=Phyra82385.2;Parent=Phyra82385;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_71 . CDS 159967 160088 . + 0 ID=Phyra82385;Parent=Phyra82385;rank=3 scaffold_71 . exon 159967 160088 . + . ID=Phyra82385.3;Parent=Phyra82385;constitutive=1;ensembl_phase=1;rank=3 scaffold_71 . CDS 160165 160271 . + 0 ID=Phyra82385;Parent=Phyra82385;rank=4 scaffold_71 . exon 160165 160271 . + . ID=Phyra82385.4;Parent=Phyra82385;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_71 . CDS 160345 160771 . + 0 ID=Phyra82385;Parent=Phyra82385;rank=5 scaffold_71 . exon 160345 160771 . + . ID=Phyra82385.5;Parent=Phyra82385;constitutive=1;ensembl_phase=2;rank=5 scaffold_71 . biological_region 166381 166383 0.999 - . logic_name=eponine scaffold_71 . repeat_region 171459 171466 . ? . description=dust scaffold_71 . biological_region 171779 171782 0.999 + . logic_name=eponine scaffold_71 ensembl protein_coding_gene 169557 170288 . - . ID=Phyra82388;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000027;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 169557 170288 . - . ID=Phyra82388;Parent=Phyra82388;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 169557 170288 . - 0 ID=Phyra82388;Parent=Phyra82388;rank=1 scaffold_71 . exon 169557 170288 . - . ID=Phyra82388.1;Parent=Phyra82388;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 172407 173123 . - . ID=Phyra82390;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000029;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 172407 173123 . - . ID=Phyra82390;Parent=Phyra82390;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 172407 173123 . - 0 ID=Phyra82390;Parent=Phyra82390;rank=1 scaffold_71 . exon 172407 173123 . - . ID=Phyra82390.1;Parent=Phyra82390;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 174023 175964 . - . ID=Phyra82391;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000030;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 174023 175964 . - . ID=Phyra82391;Parent=Phyra82391;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 174023 175320 . - 0 ID=Phyra82391;Parent=Phyra82391;rank=2 scaffold_71 . exon 174023 175320 . - . ID=Phyra82391.2;Parent=Phyra82391;constitutive=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 175499 175964 . - 0 ID=Phyra82391;Parent=Phyra82391;rank=1 scaffold_71 ensembl protein_coding_gene 165927 168999 . - . ID=Phyra96316;biotype=protein_coding;external_name=C_scaffold_71000001;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 165927 168999 . - . ID=Phyra96316;Parent=Phyra96316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 165927 166031 . - 0 ID=Phyra96316;Parent=Phyra96316;rank=8 scaffold_71 . exon 165927 166031 . - . ID=Phyra96316.8;Parent=Phyra96316;constitutive=1;rank=8 scaffold_71 . CDS 166105 166566 . - 0 ID=Phyra96316;Parent=Phyra96316;rank=7 scaffold_71 . exon 166105 166566 . - . ID=Phyra96316.7;Parent=Phyra96316;constitutive=1;rank=7 scaffold_71 . CDS 166640 166720 . - 0 ID=Phyra96316;Parent=Phyra96316;rank=6 scaffold_71 . exon 166640 166720 . - . ID=Phyra96316.6;Parent=Phyra96316;constitutive=1;rank=6 scaffold_71 . CDS 166788 167057 . - 0 ID=Phyra96316;Parent=Phyra96316;rank=5 scaffold_71 . exon 166788 167057 . - . ID=Phyra96316.5;Parent=Phyra96316;constitutive=1;rank=5 scaffold_71 . CDS 167094 167507 . - 0 ID=Phyra96316;Parent=Phyra96316;rank=4 scaffold_71 . exon 167094 167507 . - . ID=Phyra96316.4;Parent=Phyra96316;constitutive=1;rank=4 scaffold_71 . CDS 167584 167884 . - 0 ID=Phyra96316;Parent=Phyra96316;rank=3 scaffold_71 . exon 167584 167884 . - . ID=Phyra96316.3;Parent=Phyra96316;constitutive=1;ensembl_phase=2;rank=3 scaffold_71 . CDS 168065 168369 . - 0 ID=Phyra96316;Parent=Phyra96316;rank=2 scaffold_71 . exon 168065 168369 . - . ID=Phyra96316.2;Parent=Phyra96316;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_71 . CDS 168415 168999 . - 0 ID=Phyra96316;Parent=Phyra96316;rank=1 scaffold_71 . exon 168415 168999 . - . ID=Phyra96316.1;Parent=Phyra96316;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 171541 172188 . - . ID=Phyra96318;biotype=protein_coding;external_name=C_scaffold_71000003;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 171541 172188 . - . ID=Phyra96318;Parent=Phyra96318;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 171541 172188 . - 0 ID=Phyra96318;Parent=Phyra96318;rank=1 scaffold_71 . exon 171541 172188 . - . ID=Phyra96318.1;Parent=Phyra96318;constitutive=1;rank=1 scaffold_71 . repeat_region 176417 176451 . ? . description=trf scaffold_71 . repeat_region 183871 183904 . ? . description=trf scaffold_71 . repeat_region 183919 183972 . ? . description=trf scaffold_71 . exon 175499 175964 . - . ID=Phyra82391.1;Parent=Phyra82391;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 ensembl protein_coding_gene 176348 177925 . - . ID=Phyra82392;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000031;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 176348 177925 . - . ID=Phyra82392;Parent=Phyra82392;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 176348 177925 . - 0 ID=Phyra82392;Parent=Phyra82392;rank=1 scaffold_71 . exon 176348 177925 . - . ID=Phyra82392.1;Parent=Phyra82392;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 178343 179749 . - . ID=Phyra82393;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000032;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 178343 179749 . - . ID=Phyra82393;Parent=Phyra82393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 178343 179749 . - 0 ID=Phyra82393;Parent=Phyra82393;rank=1 scaffold_71 . exon 178343 179749 . - . ID=Phyra82393.1;Parent=Phyra82393;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 180612 182390 . - . ID=Phyra82394;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000033;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 180612 182390 . - . ID=Phyra82394;Parent=Phyra82394;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 180612 182390 . - 0 ID=Phyra82394;Parent=Phyra82394;rank=1 scaffold_71 . exon 180612 182390 . - . ID=Phyra82394.1;Parent=Phyra82394;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 183381 185162 . - . ID=Phyra82395;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000034;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 183381 185162 . - . ID=Phyra82395;Parent=Phyra82395;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 183381 185162 . - 0 ID=Phyra82395;Parent=Phyra82395;rank=1 scaffold_71 . exon 183381 185162 . - . ID=Phyra82395.1;Parent=Phyra82395;constitutive=1;rank=1 scaffold_71 . biological_region 184952 184955 0.999 + . logic_name=eponine scaffold_71 . biological_region 186838 186840 0.999 - . logic_name=eponine scaffold_71 . biological_region 187275 187277 0.999 - . logic_name=eponine scaffold_71 . biological_region 187513 187514 0.999 + . logic_name=eponine scaffold_71 . biological_region 187580 187584 0.999 - . logic_name=eponine scaffold_71 . biological_region 189494 189499 0.999 + . logic_name=eponine scaffold_71 . biological_region 190405 190407 0.999 + . logic_name=eponine scaffold_71 ensembl protein_coding_gene 186301 188139 . - . ID=Phyra82396;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000035;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 186301 188139 . - . ID=Phyra82396;Parent=Phyra82396;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 186301 188139 . - 0 ID=Phyra82396;Parent=Phyra82396;rank=1 scaffold_71 . exon 186301 188139 . - . ID=Phyra82396.1;Parent=Phyra82396;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 188829 192656 . - . ID=Phyra82397;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000036;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 188829 192656 . - . ID=Phyra82397;Parent=Phyra82397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 188829 190567 . - 0 ID=Phyra82397;Parent=Phyra82397;rank=4 scaffold_71 . exon 188829 190567 . - . ID=Phyra82397.4;Parent=Phyra82397;constitutive=1;ensembl_phase=1;rank=4 scaffold_71 . CDS 190782 190879 . - 0 ID=Phyra82397;Parent=Phyra82397;rank=3 scaffold_71 . exon 190782 190879 . - . ID=Phyra82397.3;Parent=Phyra82397;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_71 . CDS 191183 192562 . - 0 ID=Phyra82397;Parent=Phyra82397;rank=2 scaffold_71 . exon 191183 192562 . - . ID=Phyra82397.2;Parent=Phyra82397;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_71 . CDS 192634 192656 . - 0 ID=Phyra82397;Parent=Phyra82397;rank=1 scaffold_71 . exon 192634 192656 . - . ID=Phyra82397.1;Parent=Phyra82397;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_71 . repeat_region 203582 203623 . ? . description=trf scaffold_71 . repeat_region 203582 203626 . ? . description=trf scaffold_71 ensembl protein_coding_gene 198975 200332 . + . ID=Phyra82400;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000039;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 198975 200332 . + . ID=Phyra82400;Parent=Phyra82400;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 198975 200096 . + 0 ID=Phyra82400;Parent=Phyra82400;rank=1 scaffold_71 . exon 198975 200096 . + . ID=Phyra82400.1;Parent=Phyra82400;constitutive=1;rank=1 scaffold_71 . CDS 200165 200332 . + 0 ID=Phyra82400;Parent=Phyra82400;rank=2 scaffold_71 . exon 200165 200332 . + . ID=Phyra82400.2;Parent=Phyra82400;constitutive=1;rank=2 scaffold_71 ensembl protein_coding_gene 200535 202298 . - . ID=Phyra82401;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000040;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 200535 202298 . - . ID=Phyra82401;Parent=Phyra82401;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 200535 202298 . - 0 ID=Phyra82401;Parent=Phyra82401;rank=1 scaffold_71 . exon 200535 202298 . - . ID=Phyra82401.1;Parent=Phyra82401;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 195636 198304 . - . ID=Phyra96322;biotype=protein_coding;external_name=C_scaffold_71000007;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 195636 198304 . - . ID=Phyra96322;Parent=Phyra96322;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 195636 195699 . - 0 ID=Phyra96322;Parent=Phyra96322;rank=5 scaffold_71 . exon 195636 195699 . - . ID=Phyra96322.5;Parent=Phyra96322;constitutive=1;ensembl_phase=2;rank=5 scaffold_71 . CDS 196101 196758 . - 0 ID=Phyra96322;Parent=Phyra96322;rank=4 scaffold_71 . exon 196101 196758 . - . ID=Phyra96322.4;Parent=Phyra96322;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_71 . CDS 196804 197113 . - 0 ID=Phyra96322;Parent=Phyra96322;rank=3 scaffold_71 . exon 196804 197113 . - . ID=Phyra96322.3;Parent=Phyra96322;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_71 . CDS 197508 198097 . - 0 ID=Phyra96322;Parent=Phyra96322;rank=2 scaffold_71 . exon 197508 198097 . - . ID=Phyra96322.2;Parent=Phyra96322;constitutive=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 198154 198304 . - 0 ID=Phyra96322;Parent=Phyra96322;rank=1 scaffold_71 . exon 198154 198304 . - . ID=Phyra96322.1;Parent=Phyra96322;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 . biological_region 205794 205796 0.999 + . logic_name=eponine scaffold_71 . biological_region 205805 205806 0.999 - . logic_name=eponine scaffold_71 . biological_region 205939 205941 0.999 - . logic_name=eponine scaffold_71 . biological_region 206245 206246 0.999 + . logic_name=eponine scaffold_71 . biological_region 206264 206268 0.999 + . logic_name=eponine scaffold_71 . repeat_region 206912 207124 . ? . description=dust scaffold_71 . repeat_region 207839 207846 . ? . description=dust scaffold_71 . repeat_region 207955 207962 . ? . description=dust scaffold_71 . repeat_region 211070 211119 . ? . description=dust scaffold_71 ensembl protein_coding_gene 205088 206554 . - . ID=Phyra72015;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_71000001;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 205088 206554 . - . ID=Phyra72015;Parent=Phyra72015;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 205088 206554 . - 0 ID=Phyra72015;Parent=Phyra72015;rank=1 scaffold_71 . exon 205088 206554 . - . ID=Phyra72015.1;Parent=Phyra72015;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 203773 204849 . + . ID=Phyra82402;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000041;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 203773 204849 . + . ID=Phyra82402;Parent=Phyra82402;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 203773 204849 . + 0 ID=Phyra82402;Parent=Phyra82402;rank=1 scaffold_71 . exon 203773 204849 . + . ID=Phyra82402.1;Parent=Phyra82402;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 212798 213160 . - . ID=Phyra82404;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000043;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 212798 213160 . - . ID=Phyra82404;Parent=Phyra82404;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 212798 213160 . - 0 ID=Phyra82404;Parent=Phyra82404;rank=1 scaffold_71 . exon 212798 213160 . - . ID=Phyra82404.1;Parent=Phyra82404;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 214199 218295 . + . ID=Phyra82405;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000044;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 214199 218295 . + . ID=Phyra82405;Parent=Phyra82405;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 214199 217942 . + 0 ID=Phyra82405;Parent=Phyra82405;rank=1 scaffold_71 . exon 214199 217942 . + . ID=Phyra82405.1;Parent=Phyra82405;constitutive=1;rank=1 scaffold_71 . CDS 218023 218295 . + 0 ID=Phyra82405;Parent=Phyra82405;rank=2 scaffold_71 . exon 218023 218295 . + . ID=Phyra82405.2;Parent=Phyra82405;constitutive=1;rank=2 scaffold_71 ensembl protein_coding_gene 218561 222684 . - . ID=Phyra82406;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000045;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 218561 222684 . - . ID=Phyra82406;Parent=Phyra82406;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 218561 219918 . - 0 ID=Phyra82406;Parent=Phyra82406;rank=2 scaffold_71 . exon 218561 219918 . - . ID=Phyra82406.2;Parent=Phyra82406;constitutive=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 220200 222684 . - 0 ID=Phyra82406;Parent=Phyra82406;rank=1 scaffold_71 . exon 220200 222684 . - . ID=Phyra82406.1;Parent=Phyra82406;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 . repeat_region 224101 224113 . ? . description=dust scaffold_71 . repeat_region 225173 225228 . ? . description=trf scaffold_71 . biological_region 227777 227779 0.999 + . logic_name=eponine scaffold_71 . repeat_region 227825 227867 . ? . description=trf scaffold_71 . repeat_region 228390 228416 . ? . description=trf scaffold_71 . repeat_region 228606 228634 . ? . description=trf scaffold_71 . repeat_region 228606 228634 . ? . description=dust scaffold_71 . biological_region 228944 228946 0.999 - . logic_name=eponine scaffold_71 . repeat_region 229010 229052 . ? . description=trf scaffold_71 . repeat_region 229020 229067 . ? . description=trf scaffold_71 . biological_region 229277 229277 0.999 - . logic_name=eponine scaffold_71 . biological_region 229308 229310 0.999 - . logic_name=eponine scaffold_71 . biological_region 229472 229475 0.999 - . logic_name=eponine scaffold_71 . biological_region 229552 229557 0.999 + . logic_name=eponine scaffold_71 . biological_region 229576 229580 0.999 + . logic_name=eponine scaffold_71 . biological_region 229935 229937 0.999 - . logic_name=eponine scaffold_71 . biological_region 229950 229956 0.999 - . logic_name=eponine scaffold_71 . biological_region 229984 229988 0.999 - . logic_name=eponine scaffold_71 . biological_region 229997 229997 0.999 - . logic_name=eponine scaffold_71 . biological_region 230007 230012 0.999 + . logic_name=eponine scaffold_71 . biological_region 230099 230103 0.999 - . logic_name=eponine scaffold_71 ensembl protein_coding_gene 225148 226333 . + . ID=Phyra82407;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000046;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 225148 226333 . + . ID=Phyra82407;Parent=Phyra82407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 225148 225352 . + 0 ID=Phyra82407;Parent=Phyra82407;rank=1 scaffold_71 . exon 225148 225352 . + . ID=Phyra82407.1;Parent=Phyra82407;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 . CDS 225426 226333 . + 0 ID=Phyra82407;Parent=Phyra82407;rank=2 scaffold_71 . exon 225426 226333 . + . ID=Phyra82407.2;Parent=Phyra82407;constitutive=1;ensembl_phase=1;rank=2 scaffold_71 ensembl protein_coding_gene 226952 228651 . - . ID=Phyra82408;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000047;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 226952 228651 . - . ID=Phyra82408;Parent=Phyra82408;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 226952 228571 . - 0 ID=Phyra82408;Parent=Phyra82408;rank=2 scaffold_71 . exon 226952 228571 . - . ID=Phyra82408.2;Parent=Phyra82408;constitutive=1;rank=2 scaffold_71 . CDS 228595 228651 . - 0 ID=Phyra82408;Parent=Phyra82408;rank=1 scaffold_71 . exon 228595 228651 . - . ID=Phyra82408.1;Parent=Phyra82408;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 228839 231796 . - . ID=Phyra82409;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000048;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 228839 231796 . - . ID=Phyra82409;Parent=Phyra82409;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 228839 230192 . - 0 ID=Phyra82409;Parent=Phyra82409;rank=2 scaffold_71 . exon 228839 230192 . - . ID=Phyra82409.2;Parent=Phyra82409;constitutive=1;ensembl_phase=2;rank=2 scaffold_71 . CDS 230433 231796 . - 0 ID=Phyra82409;Parent=Phyra82409;rank=1 scaffold_71 . exon 230433 231796 . - . ID=Phyra82409.1;Parent=Phyra82409;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_71 ensembl protein_coding_gene 232797 234330 . + . ID=Phyra96324;biotype=protein_coding;external_name=C_scaffold_71000009;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 232797 234330 . + . ID=Phyra96324;Parent=Phyra96324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 232797 232846 . + 0 ID=Phyra96324;Parent=Phyra96324;rank=1 scaffold_71 . exon 232797 232846 . + . ID=Phyra96324.1;Parent=Phyra96324;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_71 . CDS 232914 233013 . + 0 ID=Phyra96324;Parent=Phyra96324;rank=2 scaffold_71 . CDS 233062 234330 . + 0 ID=Phyra96324;Parent=Phyra96324;rank=3 scaffold_71 . exon 232914 233013 . + . ID=Phyra96324.2;Parent=Phyra96324;constitutive=1;ensembl_phase=2;rank=2 scaffold_71 . exon 233062 234330 . + . ID=Phyra96324.3;Parent=Phyra96324;constitutive=1;rank=3 scaffold_71 ensembl protein_coding_gene 234642 246105 . - . ID=Phyra96325;biotype=protein_coding;external_name=C_scaffold_71000010;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 234642 246105 . - . ID=Phyra96325;Parent=Phyra96325;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 234642 234733 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=23 scaffold_71 . exon 234642 234733 . - . ID=Phyra96325.23;Parent=Phyra96325;constitutive=1;ensembl_phase=1;rank=23 scaffold_71 . CDS 234777 235331 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=22 scaffold_71 . exon 234777 235331 . - . ID=Phyra96325.22;Parent=Phyra96325;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=22 scaffold_71 . CDS 235536 235697 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=21 scaffold_71 . exon 235536 235697 . - . ID=Phyra96325.21;Parent=Phyra96325;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=21 scaffold_71 . CDS 236068 236287 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=20 scaffold_71 . exon 236068 236287 . - . ID=Phyra96325.20;Parent=Phyra96325;constitutive=1;ensembl_end_phase=1;rank=20 scaffold_71 . CDS 236330 237426 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=19 scaffold_71 . exon 236330 237426 . - . ID=Phyra96325.19;Parent=Phyra96325;constitutive=1;ensembl_phase=1;rank=19 scaffold_71 . CDS 237451 237703 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=18 scaffold_71 . exon 237451 237703 . - . ID=Phyra96325.18;Parent=Phyra96325;constitutive=1;ensembl_end_phase=1;rank=18 scaffold_71 . CDS 237779 238019 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=17 scaffold_71 . exon 237779 238019 . - . ID=Phyra96325.17;Parent=Phyra96325;constitutive=1;ensembl_phase=2;rank=17 scaffold_71 . CDS 238045 238169 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=16 scaffold_71 . exon 238045 238169 . - . ID=Phyra96325.16;Parent=Phyra96325;constitutive=1;ensembl_end_phase=2;rank=16 scaffold_71 . CDS 238190 238860 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=15 scaffold_71 . exon 238190 238860 . - . ID=Phyra96325.15;Parent=Phyra96325;constitutive=1;ensembl_phase=1;rank=15 scaffold_71 . CDS 238909 239139 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=14 scaffold_71 . exon 238909 239139 . - . ID=Phyra96325.14;Parent=Phyra96325;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_71 . CDS 239314 239442 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=13 scaffold_71 . exon 239314 239442 . - . ID=Phyra96325.13;Parent=Phyra96325;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_71 . CDS 240049 240480 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=12 scaffold_71 . exon 240049 240480 . - . ID=Phyra96325.12;Parent=Phyra96325;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_71 . CDS 240514 240780 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=11 scaffold_71 . exon 240514 240780 . - . ID=Phyra96325.11;Parent=Phyra96325;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_71 . CDS 240895 240995 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=10 scaffold_71 . exon 240895 240995 . - . ID=Phyra96325.10;Parent=Phyra96325;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_71 . CDS 241548 241760 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=9 scaffold_71 . exon 241548 241760 . - . ID=Phyra96325.9;Parent=Phyra96325;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_71 . CDS 242058 242077 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=8 scaffold_71 . exon 242058 242077 . - . ID=Phyra96325.8;Parent=Phyra96325;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_71 . CDS 242288 242846 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=7 scaffold_71 . exon 242288 242846 . - . ID=Phyra96325.7;Parent=Phyra96325;constitutive=1;ensembl_phase=2;rank=7 scaffold_71 . CDS 243033 243169 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=6 scaffold_71 . CDS 243401 243483 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=5 scaffold_71 . CDS 243517 243717 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=4 scaffold_71 . CDS 244027 244827 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=3 scaffold_71 . CDS 244879 245524 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=2 scaffold_71 . CDS 245549 246103 . - 0 ID=Phyra96325;Parent=Phyra96325;rank=1 scaffold_71 . biological_region 243388 243392 0.999 - . logic_name=eponine scaffold_71 . biological_region 245285 245287 0.999 + . logic_name=eponine scaffold_71 . biological_region 245348 245353 0.999 - . logic_name=eponine scaffold_71 . repeat_region 245885 245911 . ? . description=trf scaffold_71 . repeat_region 248044 248054 . ? . description=dust scaffold_71 . repeat_region 248623 248672 . ? . description=dust scaffold_71 . repeat_region 248762 248794 . ? . description=trf scaffold_71 . biological_region 251117 251119 0.999 + . logic_name=eponine scaffold_71 ensembl protein_coding_gene 249359 250873 . + . ID=Phyra82413;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000052;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 249359 250873 . + . ID=Phyra82413;Parent=Phyra82413;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 249359 250873 . + 0 ID=Phyra82413;Parent=Phyra82413;rank=1 scaffold_71 . exon 249359 250873 . + . ID=Phyra82413.1;Parent=Phyra82413;constitutive=1;rank=1 scaffold_71 . exon 243033 243169 . - . ID=Phyra96325.6;Parent=Phyra96325;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_71 . exon 243401 243483 . - . ID=Phyra96325.5;Parent=Phyra96325;constitutive=1;ensembl_phase=1;rank=5 scaffold_71 . exon 243517 243717 . - . ID=Phyra96325.4;Parent=Phyra96325;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_71 . exon 244027 244827 . - . ID=Phyra96325.3;Parent=Phyra96325;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_71 . exon 244879 245524 . - . ID=Phyra96325.2;Parent=Phyra96325;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_71 . exon 245549 246105 . - . ID=Phyra96325.1;Parent=Phyra96325;constitutive=1;ensembl_phase=-1;rank=1 scaffold_71 . repeat_region 260479 260648 . + . description=GypsyPi-1c_I-int scaffold_71 ensembl protein_coding_gene 252841 255200 . + . ID=Phyra82414;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_71000053;logic_name=jgi_phyra1 scaffold_71 ensembl transcript 252841 255200 . + . ID=Phyra82414;Parent=Phyra82414;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_71 . CDS 252841 253307 . + 0 ID=Phyra82414;Parent=Phyra82414;rank=1 scaffold_71 . exon 252841 253307 . + . ID=Phyra82414.1;Parent=Phyra82414;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_71 . CDS 253376 254269 . + 0 ID=Phyra82414;Parent=Phyra82414;rank=2 scaffold_71 . exon 253376 254269 . + . ID=Phyra82414.2;Parent=Phyra82414;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_71 . CDS 254441 255200 . + 0 ID=Phyra82414;Parent=Phyra82414;rank=3 scaffold_71 . exon 254441 255200 . + . ID=Phyra82414.3;Parent=Phyra82414;constitutive=1;ensembl_phase=2;rank=3 scaffold_71 . repeat_region 260662 269708 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_70 1 272102 scaffold_70 . repeat_region 642 699 . ? . description=dust scaffold_70 . repeat_region 643 669 . ? . description=trf scaffold_70 . repeat_region 662 699 . ? . description=trf scaffold_70 . repeat_region 1055 1063 . ? . description=dust scaffold_70 . repeat_region 3575 3942 . ? . description=trf scaffold_70 . biological_region 3626 3631 0.999 + . logic_name=eponine scaffold_70 . repeat_region 4897 4941 . ? . description=dust scaffold_70 . repeat_region 4905 4941 . ? . description=trf scaffold_70 . repeat_region 5229 5299 . ? . description=trf scaffold_70 . repeat_region 6941 7344 . ? . description=dust scaffold_70 . repeat_region 7345 11207 . - . description=GypsyPi-1c_I-int scaffold_70 . biological_region 7460 7462 0.999 - . logic_name=eponine scaffold_70 . biological_region 8399 8400 0.999 - . logic_name=eponine scaffold_70 . biological_region 8454 8457 0.999 + . logic_name=eponine scaffold_70 ensembl tRNA_gene 81 153 . - . ID=EPrPRAG00000000066;biotype=tRNA;description=tRNA-Asn for anticodon GUU [Source:TRNASCAN_SE%3BAcc:tRNA-Asn];external_name=tRNA-Asn;logic_name=ncrna_eg scaffold_70 ensembl transcript 81 153 . - . ID=EPrPRAT00000000066;Parent=EPrPRAG00000000066;biotype=tRNA;logic_name=ncrna_eg scaffold_70 . exon 81 153 . - . ID=EPrPRAE00000000066;Parent=EPrPRAT00000000066;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 ensembl protein_coding_gene 3491 3973 . + . ID=Phyra82273;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000001;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 3491 3973 . + . ID=Phyra82273;Parent=Phyra82273;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 3491 3973 . + 0 ID=Phyra82273;Parent=Phyra82273;rank=1 scaffold_70 . exon 3491 3973 . + . ID=Phyra82273.1;Parent=Phyra82273;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 5862 6534 . + . ID=Phyra82274;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000002;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 5862 6534 . + . ID=Phyra82274;Parent=Phyra82274;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 5862 6364 . + 0 ID=Phyra82274;Parent=Phyra82274;rank=1 scaffold_70 . exon 5862 6364 . + . ID=Phyra82274.1;Parent=Phyra82274;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . CDS 6519 6534 . + 0 ID=Phyra82274;Parent=Phyra82274;rank=2 scaffold_70 . exon 6519 6534 . + . ID=Phyra82274.2;Parent=Phyra82274;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 ensembl protein_coding_gene 7486 11120 . - . ID=Phyra82275;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000003;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 7486 11120 . - . ID=Phyra82275;Parent=Phyra82275;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 7486 7570 . - 0 ID=Phyra82275;Parent=Phyra82275;rank=6 scaffold_70 . exon 7486 7570 . - . ID=Phyra82275.6;Parent=Phyra82275;constitutive=1;ensembl_phase=2;rank=6 scaffold_70 . CDS 7633 8214 . - 0 ID=Phyra82275;Parent=Phyra82275;rank=5 scaffold_70 . exon 7633 8214 . - . ID=Phyra82275.5;Parent=Phyra82275;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_70 . CDS 8327 8500 . - 0 ID=Phyra82275;Parent=Phyra82275;rank=4 scaffold_70 . exon 8327 8500 . - . ID=Phyra82275.4;Parent=Phyra82275;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_70 . CDS 8686 9826 . - 0 ID=Phyra82275;Parent=Phyra82275;rank=3 scaffold_70 . exon 8686 9826 . - . ID=Phyra82275.3;Parent=Phyra82275;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_70 . CDS 10238 10901 . - 0 ID=Phyra82275;Parent=Phyra82275;rank=2 scaffold_70 . CDS 10950 11120 . - 0 ID=Phyra82275;Parent=Phyra82275;rank=1 scaffold_70 . repeat_region 11208 11517 . - . description=GypsyPi-1c_LTR scaffold_70 . exon 10238 10901 . - . ID=Phyra82275.2;Parent=Phyra82275;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_70 . exon 10950 11120 . - . ID=Phyra82275.1;Parent=Phyra82275;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 17742 19164 . - . ID=Phyra82277;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000005;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 17742 19164 . - . ID=Phyra82277;Parent=Phyra82277;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 17742 17893 . - 0 ID=Phyra82277;Parent=Phyra82277;rank=7 scaffold_70 . exon 17742 17893 . - . ID=Phyra82277.7;Parent=Phyra82277;constitutive=1;ensembl_phase=1;rank=7 scaffold_70 . CDS 17961 18065 . - 0 ID=Phyra82277;Parent=Phyra82277;rank=6 scaffold_70 . exon 17961 18065 . - . ID=Phyra82277.6;Parent=Phyra82277;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_70 . CDS 18270 18338 . - 0 ID=Phyra82277;Parent=Phyra82277;rank=5 scaffold_70 . exon 18270 18338 . - . ID=Phyra82277.5;Parent=Phyra82277;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_70 . CDS 18404 18515 . - 0 ID=Phyra82277;Parent=Phyra82277;rank=4 scaffold_70 . exon 18404 18515 . - . ID=Phyra82277.4;Parent=Phyra82277;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_70 . CDS 18579 18824 . - 0 ID=Phyra82277;Parent=Phyra82277;rank=3 scaffold_70 . exon 18579 18824 . - . ID=Phyra82277.3;Parent=Phyra82277;constitutive=1;rank=3 scaffold_70 . CDS 18892 18966 . - 0 ID=Phyra82277;Parent=Phyra82277;rank=2 scaffold_70 . exon 18892 18966 . - . ID=Phyra82277.2;Parent=Phyra82277;constitutive=1;rank=2 scaffold_70 . CDS 19039 19164 . - 0 ID=Phyra82277;Parent=Phyra82277;rank=1 scaffold_70 . exon 19039 19164 . - . ID=Phyra82277.1;Parent=Phyra82277;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 19373 21108 . + . ID=Phyra82278;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000006;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 19373 21108 . + . ID=Phyra82278;Parent=Phyra82278;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 19373 19457 . + 0 ID=Phyra82278;Parent=Phyra82278;rank=1 scaffold_70 . exon 19373 19457 . + . ID=Phyra82278.1;Parent=Phyra82278;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 19532 19617 . + 0 ID=Phyra82278;Parent=Phyra82278;rank=2 scaffold_70 . CDS 19685 20122 . + 0 ID=Phyra82278;Parent=Phyra82278;rank=3 scaffold_70 . CDS 20201 20280 . + 0 ID=Phyra82278;Parent=Phyra82278;rank=4 scaffold_70 . CDS 20348 20396 . + 0 ID=Phyra82278;Parent=Phyra82278;rank=5 scaffold_70 . CDS 20466 20623 . + 0 ID=Phyra82278;Parent=Phyra82278;rank=6 scaffold_70 . CDS 20692 20776 . + 0 ID=Phyra82278;Parent=Phyra82278;rank=7 scaffold_70 . CDS 20848 21108 . + 0 ID=Phyra82278;Parent=Phyra82278;rank=8 scaffold_70 ensembl protein_coding_gene 14179 15840 . + . ID=Phyra96278;biotype=protein_coding;external_name=C_scaffold_70000001;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 14179 15840 . + . ID=Phyra96278;Parent=Phyra96278;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 14179 14236 . + 0 ID=Phyra96278;Parent=Phyra96278;rank=1 scaffold_70 . exon 14179 14236 . + . ID=Phyra96278.1;Parent=Phyra96278;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 14330 14430 . + 0 ID=Phyra96278;Parent=Phyra96278;rank=2 scaffold_70 . exon 14330 14430 . + . ID=Phyra96278.2;Parent=Phyra96278;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 14523 14611 . + 0 ID=Phyra96278;Parent=Phyra96278;rank=3 scaffold_70 . exon 14523 14611 . + . ID=Phyra96278.3;Parent=Phyra96278;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_70 . CDS 14701 14862 . + 0 ID=Phyra96278;Parent=Phyra96278;rank=4 scaffold_70 . exon 14701 14862 . + . ID=Phyra96278.4;Parent=Phyra96278;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_70 . CDS 14932 15227 . + 0 ID=Phyra96278;Parent=Phyra96278;rank=5 scaffold_70 . exon 14932 15227 . + . ID=Phyra96278.5;Parent=Phyra96278;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_70 . CDS 15495 15595 . + 0 ID=Phyra96278;Parent=Phyra96278;rank=6 scaffold_70 . exon 15495 15595 . + . ID=Phyra96278.6;Parent=Phyra96278;constitutive=1;ensembl_phase=1;rank=6 scaffold_70 . CDS 15835 15840 . + 0 ID=Phyra96278;Parent=Phyra96278;rank=7 scaffold_70 . exon 15835 15840 . + . ID=Phyra96278.7;Parent=Phyra96278;constitutive=1;rank=7 scaffold_70 . exon 19532 19617 . + . ID=Phyra82278.2;Parent=Phyra82278;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . exon 19685 20122 . + . ID=Phyra82278.3;Parent=Phyra82278;constitutive=1;rank=3 scaffold_70 . exon 20201 20280 . + . ID=Phyra82278.4;Parent=Phyra82278;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_70 . exon 20348 20396 . + . ID=Phyra82278.5;Parent=Phyra82278;constitutive=1;ensembl_phase=2;rank=5 scaffold_70 . exon 20466 20623 . + . ID=Phyra82278.6;Parent=Phyra82278;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_70 . exon 20692 20776 . + . ID=Phyra82278.7;Parent=Phyra82278;constitutive=1;ensembl_phase=2;rank=7 scaffold_70 . exon 20848 21108 . + . ID=Phyra82278.8;Parent=Phyra82278;constitutive=1;rank=8 scaffold_70 ensembl protein_coding_gene 21303 22280 . - . ID=Phyra82279;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000007;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 21303 22280 . - . ID=Phyra82279;Parent=Phyra82279;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 21303 21318 . - 0 ID=Phyra82279;Parent=Phyra82279;rank=5 scaffold_70 . exon 21303 21318 . - . ID=Phyra82279.5;Parent=Phyra82279;constitutive=1;ensembl_phase=2;rank=5 scaffold_70 . CDS 21408 21649 . - 0 ID=Phyra82279;Parent=Phyra82279;rank=4 scaffold_70 . exon 21408 21649 . - . ID=Phyra82279.4;Parent=Phyra82279;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_70 . CDS 21721 21895 . - 0 ID=Phyra82279;Parent=Phyra82279;rank=3 scaffold_70 . exon 21721 21895 . - . ID=Phyra82279.3;Parent=Phyra82279;constitutive=1;ensembl_phase=2;rank=3 scaffold_70 . CDS 21964 22073 . - 0 ID=Phyra82279;Parent=Phyra82279;rank=2 scaffold_70 . exon 21964 22073 . - . ID=Phyra82279.2;Parent=Phyra82279;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_70 . CDS 22143 22280 . - 0 ID=Phyra82279;Parent=Phyra82279;rank=1 scaffold_70 . exon 22143 22280 . - . ID=Phyra82279.1;Parent=Phyra82279;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 22513 23708 . + . ID=Phyra82280;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000008;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 22513 23708 . + . ID=Phyra82280;Parent=Phyra82280;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 22513 22607 . + 0 ID=Phyra82280;Parent=Phyra82280;rank=1 scaffold_70 . exon 22513 22607 . + . ID=Phyra82280.1;Parent=Phyra82280;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . CDS 22682 22764 . + 0 ID=Phyra82280;Parent=Phyra82280;rank=2 scaffold_70 . exon 22682 22764 . + . ID=Phyra82280.2;Parent=Phyra82280;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 22838 23644 . + 0 ID=Phyra82280;Parent=Phyra82280;rank=3 scaffold_70 . exon 22838 23644 . + . ID=Phyra82280.3;Parent=Phyra82280;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_70 . CDS 23692 23708 . + 0 ID=Phyra82280;Parent=Phyra82280;rank=4 scaffold_70 . exon 23692 23708 . + . ID=Phyra82280.4;Parent=Phyra82280;constitutive=1;ensembl_phase=1;rank=4 scaffold_70 . repeat_region 30134 33070 . ? . description=dust scaffold_70 ensembl protein_coding_gene 37620 40310 . + . ID=Phyra96279;biotype=protein_coding;external_name=C_scaffold_70000002;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 37620 40310 . + . ID=Phyra96279;Parent=Phyra96279;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 37620 37770 . + 0 ID=Phyra96279;Parent=Phyra96279;rank=1 scaffold_70 . exon 37620 37770 . + . ID=Phyra96279.1;Parent=Phyra96279;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 37852 38104 . + 0 ID=Phyra96279;Parent=Phyra96279;rank=2 scaffold_70 . exon 37852 38104 . + . ID=Phyra96279.2;Parent=Phyra96279;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_70 . CDS 38222 39883 . + 0 ID=Phyra96279;Parent=Phyra96279;rank=3 scaffold_70 . exon 38222 39883 . + . ID=Phyra96279.3;Parent=Phyra96279;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_70 . CDS 39956 40310 . + 0 ID=Phyra96279;Parent=Phyra96279;rank=4 scaffold_70 . biological_region 40921 40924 0.999 - . logic_name=eponine scaffold_70 . biological_region 41690 41691 0.999 + . logic_name=eponine scaffold_70 . repeat_region 45079 45104 . ? . description=trf scaffold_70 ensembl protein_coding_gene 43033 43668 . - . ID=Phyra52571;biotype=protein_coding;external_name=gwEuk.70.38.1;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 43033 43668 . - . ID=Phyra52571;Parent=Phyra52571;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 43033 43668 . - 0 ID=Phyra52571;Parent=Phyra52571;rank=1 scaffold_70 . exon 43033 43668 . - . ID=Phyra52571.1;Parent=Phyra52571;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 42102 42806 . + . ID=Phyra72005;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_70000001;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 42102 42806 . + . ID=Phyra72005;Parent=Phyra72005;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 42102 42806 . + 0 ID=Phyra72005;Parent=Phyra72005;rank=1 scaffold_70 . exon 42102 42806 . + . ID=Phyra72005.1;Parent=Phyra72005;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 44807 45124 . + . ID=Phyra82285;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000013;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 44807 45124 . + . ID=Phyra82285;Parent=Phyra82285;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 44807 45124 . + 0 ID=Phyra82285;Parent=Phyra82285;rank=1 scaffold_70 . exon 44807 45124 . + . ID=Phyra82285.1;Parent=Phyra82285;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 45243 45785 . - . ID=Phyra82286;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000014;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 45243 45785 . - . ID=Phyra82286;Parent=Phyra82286;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 45243 45785 . - 0 ID=Phyra82286;Parent=Phyra82286;rank=1 scaffold_70 . exon 45243 45785 . - . ID=Phyra82286.1;Parent=Phyra82286;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 46903 48207 . - . ID=Phyra82287;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000015;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 46903 48207 . - . ID=Phyra82287;Parent=Phyra82287;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 46903 46975 . - 0 ID=Phyra82287;Parent=Phyra82287;rank=4 scaffold_70 . exon 46903 46975 . - . ID=Phyra82287.4;Parent=Phyra82287;constitutive=1;ensembl_phase=2;rank=4 scaffold_70 . CDS 47050 47624 . - 0 ID=Phyra82287;Parent=Phyra82287;rank=3 scaffold_70 . exon 47050 47624 . - . ID=Phyra82287.3;Parent=Phyra82287;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_70 . CDS 47692 47802 . - 0 ID=Phyra82287;Parent=Phyra82287;rank=2 scaffold_70 . exon 47692 47802 . - . ID=Phyra82287.2;Parent=Phyra82287;constitutive=1;rank=2 scaffold_70 . CDS 47869 48207 . - 0 ID=Phyra82287;Parent=Phyra82287;rank=1 scaffold_70 . exon 47869 48207 . - . ID=Phyra82287.1;Parent=Phyra82287;constitutive=1;rank=1 scaffold_70 . exon 39956 40310 . + . ID=Phyra96279.4;Parent=Phyra96279;constitutive=1;ensembl_phase=2;rank=4 scaffold_70 ensembl protein_coding_gene 40700 41804 . - . ID=Phyra96280;biotype=protein_coding;external_name=C_scaffold_70000003;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 40700 41804 . - . ID=Phyra96280;Parent=Phyra96280;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 40700 40969 . - 0 ID=Phyra96280;Parent=Phyra96280;rank=2 scaffold_70 . exon 40700 40969 . - . ID=Phyra96280.2;Parent=Phyra96280;constitutive=1;rank=2 scaffold_70 . CDS 41010 41804 . - 0 ID=Phyra96280;Parent=Phyra96280;rank=1 scaffold_70 . exon 41010 41804 . - . ID=Phyra96280.1;Parent=Phyra96280;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 53261 55863 . - . ID=Phyra52574;biotype=protein_coding;external_name=gwEuk.70.41.1;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 53261 55863 . - . ID=Phyra52574;Parent=Phyra52574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 53261 53344 . - 0 ID=Phyra52574;Parent=Phyra52574;rank=5 scaffold_70 . exon 53261 53344 . - . ID=Phyra52574.5;Parent=Phyra52574;constitutive=1;rank=5 scaffold_70 . CDS 53421 54020 . - 0 ID=Phyra52574;Parent=Phyra52574;rank=4 scaffold_70 . exon 53421 54020 . - . ID=Phyra52574.4;Parent=Phyra52574;constitutive=1;rank=4 scaffold_70 . CDS 54090 54188 . - 0 ID=Phyra52574;Parent=Phyra52574;rank=3 scaffold_70 . exon 54090 54188 . - . ID=Phyra52574.3;Parent=Phyra52574;constitutive=1;rank=3 scaffold_70 . CDS 54267 54493 . - 0 ID=Phyra52574;Parent=Phyra52574;rank=2 scaffold_70 . exon 54267 54493 . - . ID=Phyra52574.2;Parent=Phyra52574;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 54585 55863 . - 0 ID=Phyra52574;Parent=Phyra52574;rank=1 scaffold_70 . exon 54585 55863 . - . ID=Phyra52574.1;Parent=Phyra52574;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 ensembl protein_coding_gene 48915 50000 . + . ID=Phyra82288;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000016;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 48915 50000 . + . ID=Phyra82288;Parent=Phyra82288;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 48915 50000 . + 0 ID=Phyra82288;Parent=Phyra82288;rank=1 scaffold_70 . exon 48915 50000 . + . ID=Phyra82288.1;Parent=Phyra82288;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 50639 51635 . + . ID=Phyra82289;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000017;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 50639 51635 . + . ID=Phyra82289;Parent=Phyra82289;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 50639 50642 . + 0 ID=Phyra82289;Parent=Phyra82289;rank=1 scaffold_70 . exon 50639 50642 . + . ID=Phyra82289.1;Parent=Phyra82289;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 50821 51017 . + 0 ID=Phyra82289;Parent=Phyra82289;rank=2 scaffold_70 . exon 50821 51017 . + . ID=Phyra82289.2;Parent=Phyra82289;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 51081 51635 . + 0 ID=Phyra82289;Parent=Phyra82289;rank=3 scaffold_70 . exon 51081 51635 . + . ID=Phyra82289.3;Parent=Phyra82289;constitutive=1;rank=3 scaffold_70 . biological_region 60795 60800 0.999 - . logic_name=eponine scaffold_70 . biological_region 60849 60855 0.999 + . logic_name=eponine scaffold_70 . biological_region 61126 61130 0.999 - . logic_name=eponine scaffold_70 . repeat_region 66520 66571 . ? . description=trf scaffold_70 ensembl protein_coding_gene 67562 70003 . + . ID=Phyra82293;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000021;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 67562 70003 . + . ID=Phyra82293;Parent=Phyra82293;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 67562 70003 . + 0 ID=Phyra82293;Parent=Phyra82293;rank=1 scaffold_70 . exon 67562 70003 . + . ID=Phyra82293.1;Parent=Phyra82293;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 59365 60962 . - . ID=Phyra96285;biotype=protein_coding;external_name=C_scaffold_70000008;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 59365 60962 . - . ID=Phyra96285;Parent=Phyra96285;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 59365 59656 . - 0 ID=Phyra96285;Parent=Phyra96285;rank=4 scaffold_70 . exon 59365 59656 . - . ID=Phyra96285.4;Parent=Phyra96285;constitutive=1;ensembl_phase=2;rank=4 scaffold_70 . CDS 59687 59758 . - 0 ID=Phyra96285;Parent=Phyra96285;rank=3 scaffold_70 . exon 59687 59758 . - . ID=Phyra96285.3;Parent=Phyra96285;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_70 . CDS 59846 60195 . - 0 ID=Phyra96285;Parent=Phyra96285;rank=2 scaffold_70 . exon 59846 60195 . - . ID=Phyra96285.2;Parent=Phyra96285;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_70 . CDS 60357 60962 . - 0 ID=Phyra96285;Parent=Phyra96285;rank=1 scaffold_70 . exon 60357 60962 . - . ID=Phyra96285.1;Parent=Phyra96285;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 61361 66702 . + . ID=Phyra96286;biotype=protein_coding;external_name=C_scaffold_70000009;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 61361 66702 . + . ID=Phyra96286;Parent=Phyra96286;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 61361 61464 . + 0 ID=Phyra96286;Parent=Phyra96286;rank=1 scaffold_70 . exon 61361 61464 . + . ID=Phyra96286.1;Parent=Phyra96286;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . CDS 61525 61711 . + 0 ID=Phyra96286;Parent=Phyra96286;rank=2 scaffold_70 . exon 61525 61711 . + . ID=Phyra96286.2;Parent=Phyra96286;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 61767 61979 . + 0 ID=Phyra96286;Parent=Phyra96286;rank=3 scaffold_70 . exon 61767 61979 . + . ID=Phyra96286.3;Parent=Phyra96286;constitutive=1;rank=3 scaffold_70 . CDS 62001 62182 . + 0 ID=Phyra96286;Parent=Phyra96286;rank=4 scaffold_70 . exon 62001 62182 . + . ID=Phyra96286.4;Parent=Phyra96286;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_70 . CDS 62266 62434 . + 0 ID=Phyra96286;Parent=Phyra96286;rank=5 scaffold_70 . exon 62266 62434 . + . ID=Phyra96286.5;Parent=Phyra96286;constitutive=1;ensembl_phase=2;rank=5 scaffold_70 . CDS 62500 62594 . + 0 ID=Phyra96286;Parent=Phyra96286;rank=6 scaffold_70 . exon 62500 62594 . + . ID=Phyra96286.6;Parent=Phyra96286;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_70 . CDS 62843 63069 . + 0 ID=Phyra96286;Parent=Phyra96286;rank=7 scaffold_70 . exon 62843 63069 . + . ID=Phyra96286.7;Parent=Phyra96286;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_70 . CDS 63133 63198 . + 0 ID=Phyra96286;Parent=Phyra96286;rank=8 scaffold_70 . exon 63133 63198 . + . ID=Phyra96286.8;Parent=Phyra96286;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_70 . CDS 63303 63474 . + 0 ID=Phyra96286;Parent=Phyra96286;rank=9 scaffold_70 . exon 63303 63474 . + . ID=Phyra96286.9;Parent=Phyra96286;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_70 . CDS 63551 63724 . + 0 ID=Phyra96286;Parent=Phyra96286;rank=10 scaffold_70 . exon 63551 63724 . + . ID=Phyra96286.10;Parent=Phyra96286;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_70 . CDS 63794 64404 . + 0 ID=Phyra96286;Parent=Phyra96286;rank=11 scaffold_70 . exon 63794 64404 . + . ID=Phyra96286.11;Parent=Phyra96286;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_70 . CDS 64478 64638 . + 0 ID=Phyra96286;Parent=Phyra96286;rank=12 scaffold_70 . exon 64478 64638 . + . ID=Phyra96286.12;Parent=Phyra96286;constitutive=1;ensembl_phase=1;rank=12 scaffold_70 . CDS 64699 64791 . + 0 ID=Phyra96286;Parent=Phyra96286;rank=13 scaffold_70 . exon 64699 64791 . + . ID=Phyra96286.13;Parent=Phyra96286;constitutive=1;rank=13 scaffold_70 . CDS 64863 64967 . + 0 ID=Phyra96286;Parent=Phyra96286;rank=14 scaffold_70 . exon 64863 64967 . + . ID=Phyra96286.14;Parent=Phyra96286;constitutive=1;rank=14 scaffold_70 . CDS 65028 65119 . + 0 ID=Phyra96286;Parent=Phyra96286;rank=15 scaffold_70 . exon 65028 65119 . + . ID=Phyra96286.15;Parent=Phyra96286;constitutive=1;ensembl_end_phase=2;rank=15 scaffold_70 . CDS 65212 65236 . + 0 ID=Phyra96286;Parent=Phyra96286;rank=16 scaffold_70 . exon 65212 65236 . + . ID=Phyra96286.16;Parent=Phyra96286;constitutive=1;ensembl_phase=2;rank=16 scaffold_70 . CDS 65665 66702 . + 0 ID=Phyra96286;Parent=Phyra96286;rank=17 scaffold_70 . exon 65665 66702 . + . ID=Phyra96286.17;Parent=Phyra96286;constitutive=1;rank=17 scaffold_70 ensembl protein_coding_gene 70343 71560 . + . ID=Phyra82294;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000022;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 70343 71560 . + . ID=Phyra82294;Parent=Phyra82294;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 70343 71560 . + 0 ID=Phyra82294;Parent=Phyra82294;rank=1 scaffold_70 . exon 70343 71560 . + . ID=Phyra82294.1;Parent=Phyra82294;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 71724 73355 . - . ID=Phyra82295;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000023;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 71724 73355 . - . ID=Phyra82295;Parent=Phyra82295;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 71724 71900 . - 0 ID=Phyra82295;Parent=Phyra82295;rank=5 scaffold_70 . exon 71724 71900 . - . ID=Phyra82295.5;Parent=Phyra82295;constitutive=1;rank=5 scaffold_70 . CDS 71989 72137 . - 0 ID=Phyra82295;Parent=Phyra82295;rank=4 scaffold_70 . exon 71989 72137 . - . ID=Phyra82295.4;Parent=Phyra82295;constitutive=1;ensembl_phase=1;rank=4 scaffold_70 . CDS 72219 72450 . - 0 ID=Phyra82295;Parent=Phyra82295;rank=3 scaffold_70 . exon 72219 72450 . - . ID=Phyra82295.3;Parent=Phyra82295;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_70 . CDS 72521 73060 . - 0 ID=Phyra82295;Parent=Phyra82295;rank=2 scaffold_70 . exon 72521 73060 . - . ID=Phyra82295.2;Parent=Phyra82295;constitutive=1;rank=2 scaffold_70 . CDS 73143 73355 . - 0 ID=Phyra82295;Parent=Phyra82295;rank=1 scaffold_70 . exon 73143 73355 . - . ID=Phyra82295.1;Parent=Phyra82295;constitutive=1;rank=1 scaffold_70 . repeat_region 78880 78889 . ? . description=dust scaffold_70 . biological_region 84151 84155 0.999 + . logic_name=eponine scaffold_70 . biological_region 84187 84191 0.999 - . logic_name=eponine scaffold_70 . biological_region 84207 84211 0.999 + . logic_name=eponine scaffold_70 . biological_region 85868 85869 0.999 + . logic_name=eponine scaffold_70 . biological_region 85953 85953 0.999 - . logic_name=eponine scaffold_70 . repeat_region 86126 86133 . ? . description=dust scaffold_70 . biological_region 86132 86139 0.999 - . logic_name=eponine scaffold_70 . biological_region 86745 86749 0.999 - . logic_name=eponine scaffold_70 ensembl protein_coding_gene 79120 80468 . + . ID=Phyra82296;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000024;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 79120 80468 . + . ID=Phyra82296;Parent=Phyra82296;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 79120 79803 . + 0 ID=Phyra82296;Parent=Phyra82296;rank=1 scaffold_70 . exon 79120 79803 . + . ID=Phyra82296.1;Parent=Phyra82296;constitutive=1;rank=1 scaffold_70 . CDS 79871 80026 . + 0 ID=Phyra82296;Parent=Phyra82296;rank=2 scaffold_70 . exon 79871 80026 . + . ID=Phyra82296.2;Parent=Phyra82296;constitutive=1;rank=2 scaffold_70 . CDS 80097 80468 . + 0 ID=Phyra82296;Parent=Phyra82296;rank=3 scaffold_70 . exon 80097 80468 . + . ID=Phyra82296.3;Parent=Phyra82296;constitutive=1;rank=3 scaffold_70 ensembl protein_coding_gene 80585 81671 . - . ID=Phyra82297;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000025;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 80585 81671 . - . ID=Phyra82297;Parent=Phyra82297;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 80585 81142 . - 0 ID=Phyra82297;Parent=Phyra82297;rank=2 scaffold_70 . exon 80585 81142 . - . ID=Phyra82297.2;Parent=Phyra82297;constitutive=1;rank=2 scaffold_70 . CDS 81204 81671 . - 0 ID=Phyra82297;Parent=Phyra82297;rank=1 scaffold_70 . exon 81204 81671 . - . ID=Phyra82297.1;Parent=Phyra82297;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 81993 84446 . - . ID=Phyra82298;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000026;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 81993 84446 . - . ID=Phyra82298;Parent=Phyra82298;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 81993 84446 . - 0 ID=Phyra82298;Parent=Phyra82298;rank=1 scaffold_70 . exon 81993 84446 . - . ID=Phyra82298.1;Parent=Phyra82298;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 86414 86866 . + . ID=Phyra82299;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000027;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 86414 86866 . + . ID=Phyra82299;Parent=Phyra82299;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 86414 86866 . + 0 ID=Phyra82299;Parent=Phyra82299;rank=1 scaffold_70 . exon 86414 86866 . + . ID=Phyra82299.1;Parent=Phyra82299;constitutive=1;rank=1 scaffold_70 . repeat_region 91240 91275 . ? . description=trf scaffold_70 ensembl protein_coding_gene 87516 94189 . - . ID=Phyra82300;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000028;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 87516 94189 . - . ID=Phyra82300;Parent=Phyra82300;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 87516 87527 . - 0 ID=Phyra82300;Parent=Phyra82300;rank=16 scaffold_70 . exon 87516 87527 . - . ID=Phyra82300.16;Parent=Phyra82300;constitutive=1;rank=16 scaffold_70 . CDS 87663 88472 . - 0 ID=Phyra82300;Parent=Phyra82300;rank=15 scaffold_70 . exon 87663 88472 . - . ID=Phyra82300.15;Parent=Phyra82300;constitutive=1;rank=15 scaffold_70 . CDS 88546 89006 . - 0 ID=Phyra82300;Parent=Phyra82300;rank=14 scaffold_70 . exon 88546 89006 . - . ID=Phyra82300.14;Parent=Phyra82300;constitutive=1;ensembl_phase=1;rank=14 scaffold_70 . CDS 89083 89121 . - 0 ID=Phyra82300;Parent=Phyra82300;rank=13 scaffold_70 . exon 89083 89121 . - . ID=Phyra82300.13;Parent=Phyra82300;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_70 . CDS 89369 89812 . - 0 ID=Phyra82300;Parent=Phyra82300;rank=12 scaffold_70 . exon 89369 89812 . - . ID=Phyra82300.12;Parent=Phyra82300;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_70 . CDS 89872 89956 . - 0 ID=Phyra82300;Parent=Phyra82300;rank=11 scaffold_70 . exon 89872 89956 . - . ID=Phyra82300.11;Parent=Phyra82300;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_70 . CDS 89978 90027 . - 0 ID=Phyra82300;Parent=Phyra82300;rank=10 scaffold_70 . exon 89978 90027 . - . ID=Phyra82300.10;Parent=Phyra82300;constitutive=1;ensembl_phase=1;rank=10 scaffold_70 . CDS 90139 90153 . - 0 ID=Phyra82300;Parent=Phyra82300;rank=9 scaffold_70 . exon 90139 90153 . - . ID=Phyra82300.9;Parent=Phyra82300;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_70 . CDS 90349 90722 . - 0 ID=Phyra82300;Parent=Phyra82300;rank=8 scaffold_70 . exon 90349 90722 . - . ID=Phyra82300.8;Parent=Phyra82300;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_70 . CDS 90801 90964 . - 0 ID=Phyra82300;Parent=Phyra82300;rank=7 scaffold_70 . exon 90801 90964 . - . ID=Phyra82300.7;Parent=Phyra82300;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_70 . CDS 91045 91374 . - 0 ID=Phyra82300;Parent=Phyra82300;rank=6 scaffold_70 . exon 91045 91374 . - . ID=Phyra82300.6;Parent=Phyra82300;constitutive=1;rank=6 scaffold_70 . CDS 91436 91495 . - 0 ID=Phyra82300;Parent=Phyra82300;rank=5 scaffold_70 . exon 91436 91495 . - . ID=Phyra82300.5;Parent=Phyra82300;constitutive=1;rank=5 scaffold_70 . CDS 91561 91766 . - 0 ID=Phyra82300;Parent=Phyra82300;rank=4 scaffold_70 . exon 91561 91766 . - . ID=Phyra82300.4;Parent=Phyra82300;constitutive=1;ensembl_phase=1;rank=4 scaffold_70 . CDS 92080 93105 . - 0 ID=Phyra82300;Parent=Phyra82300;rank=3 scaffold_70 . exon 92080 93105 . - . ID=Phyra82300.3;Parent=Phyra82300;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_70 . CDS 93179 93973 . - 0 ID=Phyra82300;Parent=Phyra82300;rank=2 scaffold_70 . exon 93179 93973 . - . ID=Phyra82300.2;Parent=Phyra82300;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 94036 94189 . - 0 ID=Phyra82300;Parent=Phyra82300;rank=1 scaffold_70 . exon 94036 94189 . - . ID=Phyra82300.1;Parent=Phyra82300;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 ensembl protein_coding_gene 94443 96156 . - . ID=Phyra96289;biotype=protein_coding;external_name=C_scaffold_70000012;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 94443 96156 . - . ID=Phyra96289;Parent=Phyra96289;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 94443 94650 . - 0 ID=Phyra96289;Parent=Phyra96289;rank=6 scaffold_70 . exon 94443 94650 . - . ID=Phyra96289.6;Parent=Phyra96289;constitutive=1;ensembl_phase=2;rank=6 scaffold_70 . CDS 94731 95010 . - 0 ID=Phyra96289;Parent=Phyra96289;rank=5 scaffold_70 . exon 94731 95010 . - . ID=Phyra96289.5;Parent=Phyra96289;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_70 . CDS 95091 95153 . - 0 ID=Phyra96289;Parent=Phyra96289;rank=4 scaffold_70 . exon 95091 95153 . - . ID=Phyra96289.4;Parent=Phyra96289;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_70 . CDS 95231 95405 . - 0 ID=Phyra96289;Parent=Phyra96289;rank=3 scaffold_70 . exon 95231 95405 . - . ID=Phyra96289.3;Parent=Phyra96289;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_70 . CDS 95487 95674 . - 0 ID=Phyra96289;Parent=Phyra96289;rank=2 scaffold_70 . exon 95487 95674 . - . ID=Phyra96289.2;Parent=Phyra96289;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 95758 96154 . - 0 ID=Phyra96289;Parent=Phyra96289;rank=1 scaffold_70 . exon 95758 96156 . - . ID=Phyra96289.1;Parent=Phyra96289;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_70 . repeat_region 105687 105870 . ? . description=dust scaffold_70 ensembl pseudogene 101470 101722 . - . ID=Phyra52578;biotype=pseudogene;external_name=gwEuk.70.45.1;logic_name=jgi_phyra1 scaffold_70 ensembl pseudogene 101470 101722 . - . ID=Phyra52578;Parent=Phyra52578;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_70 . exon 101470 101722 . - . ID=Phyra52578.1;Parent=Phyra52578;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 ensembl protein_coding_gene 97853 98938 . + . ID=Phyra82302;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000030;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 97853 98938 . + . ID=Phyra82302;Parent=Phyra82302;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 97853 98938 . + 0 ID=Phyra82302;Parent=Phyra82302;rank=1 scaffold_70 . exon 97853 98938 . + . ID=Phyra82302.1;Parent=Phyra82302;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 103215 105136 . - . ID=Phyra82303;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000031;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 103215 105136 . - . ID=Phyra82303;Parent=Phyra82303;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 103215 103225 . - 0 ID=Phyra82303;Parent=Phyra82303;rank=5 scaffold_70 . exon 103215 103225 . - . ID=Phyra82303.5;Parent=Phyra82303;constitutive=1;ensembl_phase=1;rank=5 scaffold_70 . CDS 103291 104349 . - 0 ID=Phyra82303;Parent=Phyra82303;rank=4 scaffold_70 . exon 103291 104349 . - . ID=Phyra82303.4;Parent=Phyra82303;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_70 . CDS 104426 104768 . - 0 ID=Phyra82303;Parent=Phyra82303;rank=3 scaffold_70 . exon 104426 104768 . - . ID=Phyra82303.3;Parent=Phyra82303;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_70 . CDS 104806 104909 . - 0 ID=Phyra82303;Parent=Phyra82303;rank=2 scaffold_70 . exon 104806 104909 . - . ID=Phyra82303.2;Parent=Phyra82303;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 104929 105136 . - 0 ID=Phyra82303;Parent=Phyra82303;rank=1 scaffold_70 . exon 104929 105136 . - . ID=Phyra82303.1;Parent=Phyra82303;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . biological_region 115554 115556 0.999 - . logic_name=eponine scaffold_70 . repeat_region 116185 116282 . ? . description=trf scaffold_70 . repeat_region 116188 116246 . ? . description=trf scaffold_70 ensembl protein_coding_gene 107308 108360 . + . ID=Phyra72008;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_70000004;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 107308 108360 . + . ID=Phyra72008;Parent=Phyra72008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 107308 108360 . + 0 ID=Phyra72008;Parent=Phyra72008;rank=1 scaffold_70 . exon 107308 108360 . + . ID=Phyra72008.1;Parent=Phyra72008;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 110028 111080 . + . ID=Phyra72009;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_70000005;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 110028 111080 . + . ID=Phyra72009;Parent=Phyra72009;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 110028 111080 . + 0 ID=Phyra72009;Parent=Phyra72009;rank=1 scaffold_70 . exon 110028 111080 . + . ID=Phyra72009.1;Parent=Phyra72009;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 111588 112163 . + . ID=Phyra82306;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000034;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 111588 112163 . + . ID=Phyra82306;Parent=Phyra82306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 111588 112163 . + 0 ID=Phyra82306;Parent=Phyra82306;rank=1 scaffold_70 . exon 111588 112163 . + . ID=Phyra82306.1;Parent=Phyra82306;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 112498 115621 . - . ID=Phyra82307;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000035;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 112498 115621 . - . ID=Phyra82307;Parent=Phyra82307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 112498 112536 . - 0 ID=Phyra82307;Parent=Phyra82307;rank=9 scaffold_70 . exon 112498 112536 . - . ID=Phyra82307.9;Parent=Phyra82307;constitutive=1;rank=9 scaffold_70 . CDS 112615 112839 . - 0 ID=Phyra82307;Parent=Phyra82307;rank=8 scaffold_70 . exon 112615 112839 . - . ID=Phyra82307.8;Parent=Phyra82307;constitutive=1;rank=8 scaffold_70 . CDS 112930 113009 . - 0 ID=Phyra82307;Parent=Phyra82307;rank=7 scaffold_70 . exon 112930 113009 . - . ID=Phyra82307.7;Parent=Phyra82307;constitutive=1;ensembl_phase=1;rank=7 scaffold_70 . CDS 113217 113538 . - 0 ID=Phyra82307;Parent=Phyra82307;rank=6 scaffold_70 . exon 113217 113538 . - . ID=Phyra82307.6;Parent=Phyra82307;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_70 . CDS 113604 113698 . - 0 ID=Phyra82307;Parent=Phyra82307;rank=5 scaffold_70 . exon 113604 113698 . - . ID=Phyra82307.5;Parent=Phyra82307;constitutive=1;ensembl_phase=1;rank=5 scaffold_70 . CDS 113943 113975 . - 0 ID=Phyra82307;Parent=Phyra82307;rank=4 scaffold_70 . exon 113943 113975 . - . ID=Phyra82307.4;Parent=Phyra82307;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_70 . CDS 114146 114439 . - 0 ID=Phyra82307;Parent=Phyra82307;rank=3 scaffold_70 . exon 114146 114439 . - . ID=Phyra82307.3;Parent=Phyra82307;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_70 . CDS 114627 114755 . - 0 ID=Phyra82307;Parent=Phyra82307;rank=2 scaffold_70 . exon 114627 114755 . - . ID=Phyra82307.2;Parent=Phyra82307;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 114841 115621 . - 0 ID=Phyra82307;Parent=Phyra82307;rank=1 scaffold_70 . exon 114841 115621 . - . ID=Phyra82307.1;Parent=Phyra82307;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 ensembl protein_coding_gene 116582 117642 . - . ID=Phyra82309;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000037;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 116582 117642 . - . ID=Phyra82309;Parent=Phyra82309;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 116582 116606 . - 0 ID=Phyra82309;Parent=Phyra82309;rank=2 scaffold_70 . exon 116582 116606 . - . ID=Phyra82309.2;Parent=Phyra82309;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 116681 117642 . - 0 ID=Phyra82309;Parent=Phyra82309;rank=1 scaffold_70 ensembl protein_coding_gene 115727 116349 . + . ID=Phyra96291;biotype=protein_coding;external_name=C_scaffold_70000014;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 115727 116349 . + . ID=Phyra96291;Parent=Phyra96291;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 115727 115910 . + 0 ID=Phyra96291;Parent=Phyra96291;rank=1 scaffold_70 . exon 115727 115910 . + . ID=Phyra96291.1;Parent=Phyra96291;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 115999 116070 . + 0 ID=Phyra96291;Parent=Phyra96291;rank=2 scaffold_70 . exon 115999 116070 . + . ID=Phyra96291.2;Parent=Phyra96291;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 116141 116349 . + 0 ID=Phyra96291;Parent=Phyra96291;rank=3 scaffold_70 . exon 116141 116349 . + . ID=Phyra96291.3;Parent=Phyra96291;constitutive=1;ensembl_phase=1;rank=3 scaffold_70 . repeat_region 126097 126104 . ? . description=dust scaffold_70 ensembl protein_coding_gene 119509 121053 . - . ID=Phyra72010;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_70000006;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 119509 121053 . - . ID=Phyra72010;Parent=Phyra72010;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 119509 121053 . - 0 ID=Phyra72010;Parent=Phyra72010;rank=1 scaffold_70 . exon 119509 121053 . - . ID=Phyra72010.1;Parent=Phyra72010;constitutive=1;rank=1 scaffold_70 . exon 116681 117642 . - . ID=Phyra82309.1;Parent=Phyra82309;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 ensembl protein_coding_gene 118435 119273 . + . ID=Phyra82310;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000038;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 118435 119273 . + . ID=Phyra82310;Parent=Phyra82310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 118435 118761 . + 0 ID=Phyra82310;Parent=Phyra82310;rank=1 scaffold_70 . exon 118435 118761 . + . ID=Phyra82310.1;Parent=Phyra82310;constitutive=1;rank=1 scaffold_70 . CDS 118840 119068 . + 0 ID=Phyra82310;Parent=Phyra82310;rank=2 scaffold_70 . exon 118840 119068 . + . ID=Phyra82310.2;Parent=Phyra82310;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_70 . CDS 119140 119273 . + 0 ID=Phyra82310;Parent=Phyra82310;rank=3 scaffold_70 . exon 119140 119273 . + . ID=Phyra82310.3;Parent=Phyra82310;constitutive=1;ensembl_phase=1;rank=3 scaffold_70 ensembl protein_coding_gene 121349 122242 . - . ID=Phyra82312;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000040;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 121349 122242 . - . ID=Phyra82312;Parent=Phyra82312;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 121349 122242 . - 0 ID=Phyra82312;Parent=Phyra82312;rank=1 scaffold_70 . exon 121349 122242 . - . ID=Phyra82312.1;Parent=Phyra82312;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 123047 123952 . + . ID=Phyra96295;biotype=protein_coding;external_name=C_scaffold_70000018;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 123047 123952 . + . ID=Phyra96295;Parent=Phyra96295;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 123047 123952 . + 0 ID=Phyra96295;Parent=Phyra96295;rank=1 scaffold_70 . exon 123047 123952 . + . ID=Phyra96295.1;Parent=Phyra96295;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 124293 126484 . + . ID=Phyra96296;biotype=protein_coding;external_name=C_scaffold_70000019;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 124293 126484 . + . ID=Phyra96296;Parent=Phyra96296;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 124293 125172 . + 0 ID=Phyra96296;Parent=Phyra96296;rank=1 scaffold_70 . exon 124293 125172 . + . ID=Phyra96296.1;Parent=Phyra96296;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 125565 126484 . + 0 ID=Phyra96296;Parent=Phyra96296;rank=2 scaffold_70 . exon 125565 126484 . + . ID=Phyra96296.2;Parent=Phyra96296;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . repeat_region 127958 128268 . ? . description=trf scaffold_70 . biological_region 129796 129800 0.999 + . logic_name=eponine scaffold_70 . biological_region 129927 129931 0.999 - . logic_name=eponine scaffold_70 . biological_region 130324 130324 0.999 + . logic_name=eponine scaffold_70 . biological_region 130369 130373 0.999 - . logic_name=eponine scaffold_70 . biological_region 130409 130411 0.999 - . logic_name=eponine scaffold_70 . biological_region 130423 130428 0.999 + . logic_name=eponine scaffold_70 . biological_region 130453 130458 0.999 - . logic_name=eponine scaffold_70 . repeat_region 130485 130519 . ? . description=trf scaffold_70 . biological_region 131323 131324 0.999 - . logic_name=eponine scaffold_70 . biological_region 136037 136040 0.999 + . logic_name=eponine scaffold_70 ensembl protein_coding_gene 129012 129782 . - . ID=Phyra72011;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_70000007;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 129012 129782 . - . ID=Phyra72011;Parent=Phyra72011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 129012 129782 . - 0 ID=Phyra72011;Parent=Phyra72011;rank=1 scaffold_70 . exon 129012 129782 . - . ID=Phyra72011.1;Parent=Phyra72011;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 130074 131209 . - . ID=Phyra82317;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000045;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 130074 131209 . - . ID=Phyra82317;Parent=Phyra82317;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 130074 130147 . - 0 ID=Phyra82317;Parent=Phyra82317;rank=5 scaffold_70 . exon 130074 130147 . - . ID=Phyra82317.5;Parent=Phyra82317;constitutive=1;ensembl_phase=1;rank=5 scaffold_70 . CDS 130215 130439 . - 0 ID=Phyra82317;Parent=Phyra82317;rank=4 scaffold_70 . exon 130215 130439 . - . ID=Phyra82317.4;Parent=Phyra82317;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_70 . CDS 130459 130718 . - 0 ID=Phyra82317;Parent=Phyra82317;rank=3 scaffold_70 . exon 130459 130718 . - . ID=Phyra82317.3;Parent=Phyra82317;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_70 . CDS 130785 130854 . - 0 ID=Phyra82317;Parent=Phyra82317;rank=2 scaffold_70 . exon 130785 130854 . - . ID=Phyra82317.2;Parent=Phyra82317;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_70 . CDS 130921 131209 . - 0 ID=Phyra82317;Parent=Phyra82317;rank=1 scaffold_70 . exon 130921 131209 . - . ID=Phyra82317.1;Parent=Phyra82317;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 ensembl protein_coding_gene 131484 133149 . + . ID=Phyra82318;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000046;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 131484 133149 . + . ID=Phyra82318;Parent=Phyra82318;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 131484 131884 . + 0 ID=Phyra82318;Parent=Phyra82318;rank=1 scaffold_70 . exon 131484 131884 . + . ID=Phyra82318.1;Parent=Phyra82318;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . CDS 131964 133149 . + 0 ID=Phyra82318;Parent=Phyra82318;rank=2 scaffold_70 . exon 131964 133149 . + . ID=Phyra82318.2;Parent=Phyra82318;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 ensembl protein_coding_gene 133567 134955 . - . ID=Phyra82319;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000047;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 133567 134955 . - . ID=Phyra82319;Parent=Phyra82319;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 133567 134566 . - 0 ID=Phyra82319;Parent=Phyra82319;rank=3 scaffold_70 . exon 133567 134566 . - . ID=Phyra82319.3;Parent=Phyra82319;constitutive=1;ensembl_phase=2;rank=3 scaffold_70 . CDS 134778 134837 . - 0 ID=Phyra82319;Parent=Phyra82319;rank=2 scaffold_70 . exon 134778 134837 . - . ID=Phyra82319.2;Parent=Phyra82319;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_70 . CDS 134936 134955 . - 0 ID=Phyra82319;Parent=Phyra82319;rank=1 scaffold_70 . exon 134936 134955 . - . ID=Phyra82319.1;Parent=Phyra82319;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 ensembl protein_coding_gene 135128 139242 . + . ID=Phyra96298;biotype=protein_coding;external_name=C_scaffold_70000021;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 135128 139242 . + . ID=Phyra96298;Parent=Phyra96298;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 135128 135320 . + 0 ID=Phyra96298;Parent=Phyra96298;rank=1 scaffold_70 . exon 135128 135320 . + . ID=Phyra96298.1;Parent=Phyra96298;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 135386 135462 . + 0 ID=Phyra96298;Parent=Phyra96298;rank=2 scaffold_70 . exon 135386 135462 . + . ID=Phyra96298.2;Parent=Phyra96298;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 135533 135572 . + 0 ID=Phyra96298;Parent=Phyra96298;rank=3 scaffold_70 . exon 135533 135572 . + . ID=Phyra96298.3;Parent=Phyra96298;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_70 . CDS 135875 136577 . + 0 ID=Phyra96298;Parent=Phyra96298;rank=4 scaffold_70 . exon 135875 136577 . + . ID=Phyra96298.4;Parent=Phyra96298;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_70 . CDS 136638 136752 . + 0 ID=Phyra96298;Parent=Phyra96298;rank=5 scaffold_70 . CDS 136817 136963 . + 0 ID=Phyra96298;Parent=Phyra96298;rank=6 scaffold_70 . CDS 137026 137136 . + 0 ID=Phyra96298;Parent=Phyra96298;rank=7 scaffold_70 . CDS 137749 137983 . + 0 ID=Phyra96298;Parent=Phyra96298;rank=8 scaffold_70 . CDS 138089 138252 . + 0 ID=Phyra96298;Parent=Phyra96298;rank=9 scaffold_70 . CDS 138289 138487 . + 0 ID=Phyra96298;Parent=Phyra96298;rank=10 scaffold_70 . CDS 138662 138964 . + 0 ID=Phyra96298;Parent=Phyra96298;rank=11 scaffold_70 . CDS 138992 139242 . + 0 ID=Phyra96298;Parent=Phyra96298;rank=12 scaffold_70 . repeat_region 142088 142251 . + . description=(CTG)n scaffold_70 . repeat_region 142092 142131 . ? . description=dust scaffold_70 . repeat_region 142195 142227 . ? . description=dust scaffold_70 . repeat_region 142342 142365 . ? . description=dust scaffold_70 . exon 136638 136752 . + . ID=Phyra96298.5;Parent=Phyra96298;constitutive=1;ensembl_phase=2;rank=5 scaffold_70 . exon 136817 136963 . + . ID=Phyra96298.6;Parent=Phyra96298;constitutive=1;rank=6 scaffold_70 . exon 137026 137136 . + . ID=Phyra96298.7;Parent=Phyra96298;constitutive=1;rank=7 scaffold_70 . exon 137749 137983 . + . ID=Phyra96298.8;Parent=Phyra96298;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_70 . exon 138089 138252 . + . ID=Phyra96298.9;Parent=Phyra96298;constitutive=1;ensembl_phase=1;rank=9 scaffold_70 . exon 138289 138487 . + . ID=Phyra96298.10;Parent=Phyra96298;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_70 . exon 138662 138964 . + . ID=Phyra96298.11;Parent=Phyra96298;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_70 . exon 138992 139242 . + . ID=Phyra96298.12;Parent=Phyra96298;constitutive=1;ensembl_phase=1;rank=12 scaffold_70 ensembl protein_coding_gene 140031 142869 . - . ID=Phyra96300;biotype=protein_coding;external_name=C_scaffold_70000023;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 140031 142869 . - . ID=Phyra96300;Parent=Phyra96300;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 140031 140362 . - 0 ID=Phyra96300;Parent=Phyra96300;rank=8 scaffold_70 . exon 140031 140362 . - . ID=Phyra96300.8;Parent=Phyra96300;constitutive=1;ensembl_phase=1;rank=8 scaffold_70 . CDS 140501 140961 . - 0 ID=Phyra96300;Parent=Phyra96300;rank=7 scaffold_70 . exon 140501 140961 . - . ID=Phyra96300.7;Parent=Phyra96300;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_70 . CDS 141169 141250 . - 0 ID=Phyra96300;Parent=Phyra96300;rank=6 scaffold_70 . exon 141169 141250 . - . ID=Phyra96300.6;Parent=Phyra96300;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_70 . CDS 141294 141425 . - 0 ID=Phyra96300;Parent=Phyra96300;rank=5 scaffold_70 . exon 141294 141425 . - . ID=Phyra96300.5;Parent=Phyra96300;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_70 . CDS 141453 141835 . - 0 ID=Phyra96300;Parent=Phyra96300;rank=4 scaffold_70 . exon 141453 141835 . - . ID=Phyra96300.4;Parent=Phyra96300;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_70 . CDS 141896 142017 . - 0 ID=Phyra96300;Parent=Phyra96300;rank=3 scaffold_70 . exon 141896 142017 . - . ID=Phyra96300.3;Parent=Phyra96300;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_70 . CDS 142042 142411 . - 0 ID=Phyra96300;Parent=Phyra96300;rank=2 scaffold_70 . exon 142042 142411 . - . ID=Phyra96300.2;Parent=Phyra96300;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 142736 142869 . - 0 ID=Phyra96300;Parent=Phyra96300;rank=1 scaffold_70 . exon 142736 142869 . - . ID=Phyra96300.1;Parent=Phyra96300;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 ensembl protein_coding_gene 144849 146126 . + . ID=Phyra96301;biotype=protein_coding;external_name=C_scaffold_70000024;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 144849 146126 . + . ID=Phyra96301;Parent=Phyra96301;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 144849 145060 . + 0 ID=Phyra96301;Parent=Phyra96301;rank=1 scaffold_70 . exon 144849 145060 . + . ID=Phyra96301.1;Parent=Phyra96301;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . CDS 145440 145790 . + 0 ID=Phyra96301;Parent=Phyra96301;rank=2 scaffold_70 . exon 145440 145790 . + . ID=Phyra96301.2;Parent=Phyra96301;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_70 . CDS 145877 145911 . + 0 ID=Phyra96301;Parent=Phyra96301;rank=3 scaffold_70 . CDS 146038 146126 . + 0 ID=Phyra96301;Parent=Phyra96301;rank=4 scaffold_70 . repeat_region 145796 145815 . ? . description=trf scaffold_70 . biological_region 152068 152072 0.999 - . logic_name=eponine scaffold_70 . biological_region 155471 155472 0.999 + . logic_name=eponine scaffold_70 ensembl protein_coding_gene 146641 150558 . - . ID=Phyra82323;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000051;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 146641 150558 . - . ID=Phyra82323;Parent=Phyra82323;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 146641 150558 . - 0 ID=Phyra82323;Parent=Phyra82323;rank=1 scaffold_70 . exon 146641 150558 . - . ID=Phyra82323.1;Parent=Phyra82323;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 153694 155048 . - . ID=Phyra82324;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000052;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 153694 155048 . - . ID=Phyra82324;Parent=Phyra82324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 153694 154030 . - 0 ID=Phyra82324;Parent=Phyra82324;rank=2 scaffold_70 . exon 153694 154030 . - . ID=Phyra82324.2;Parent=Phyra82324;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 154105 155048 . - 0 ID=Phyra82324;Parent=Phyra82324;rank=1 scaffold_70 . exon 154105 155048 . - . ID=Phyra82324.1;Parent=Phyra82324;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 ensembl protein_coding_gene 155210 157060 . + . ID=Phyra82325;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000053;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 155210 157060 . + . ID=Phyra82325;Parent=Phyra82325;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 155210 157060 . + 0 ID=Phyra82325;Parent=Phyra82325;rank=1 scaffold_70 . exon 155210 157060 . + . ID=Phyra82325.1;Parent=Phyra82325;constitutive=1;rank=1 scaffold_70 . exon 145877 145911 . + . ID=Phyra96301.3;Parent=Phyra96301;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_70 . exon 146038 146126 . + . ID=Phyra96301.4;Parent=Phyra96301;constitutive=1;ensembl_phase=1;rank=4 scaffold_70 . repeat_region 161159 161204 . ? . description=dust scaffold_70 . repeat_region 162336 162357 . ? . description=dust scaffold_70 ensembl protein_coding_gene 161057 162026 . + . ID=Phyra72012;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_70000008;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 161057 162026 . + . ID=Phyra72012;Parent=Phyra72012;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 161057 161155 . + 0 ID=Phyra72012;Parent=Phyra72012;rank=1 scaffold_70 . exon 161057 161155 . + . ID=Phyra72012.1;Parent=Phyra72012;constitutive=1;rank=1 scaffold_70 . CDS 161252 161342 . + 0 ID=Phyra72012;Parent=Phyra72012;rank=2 scaffold_70 . exon 161252 161342 . + . ID=Phyra72012.2;Parent=Phyra72012;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_70 . CDS 161422 161522 . + 0 ID=Phyra72012;Parent=Phyra72012;rank=3 scaffold_70 . exon 161422 161522 . + . ID=Phyra72012.3;Parent=Phyra72012;constitutive=1;ensembl_phase=1;rank=3 scaffold_70 . CDS 161584 161823 . + 0 ID=Phyra72012;Parent=Phyra72012;rank=4 scaffold_70 . exon 161584 161823 . + . ID=Phyra72012.4;Parent=Phyra72012;constitutive=1;rank=4 scaffold_70 . CDS 161895 162026 . + 0 ID=Phyra72012;Parent=Phyra72012;rank=5 scaffold_70 . exon 161895 162026 . + . ID=Phyra72012.5;Parent=Phyra72012;constitutive=1;rank=5 scaffold_70 ensembl protein_coding_gene 157363 159723 . - . ID=Phyra82326;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000054;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 157363 159723 . - . ID=Phyra82326;Parent=Phyra82326;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 157363 159723 . - 0 ID=Phyra82326;Parent=Phyra82326;rank=1 scaffold_70 . exon 157363 159723 . - . ID=Phyra82326.1;Parent=Phyra82326;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 159954 160727 . - . ID=Phyra82327;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000055;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 159954 160727 . - . ID=Phyra82327;Parent=Phyra82327;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 159954 160131 . - 0 ID=Phyra82327;Parent=Phyra82327;rank=3 scaffold_70 . exon 159954 160131 . - . ID=Phyra82327.3;Parent=Phyra82327;constitutive=1;ensembl_phase=2;rank=3 scaffold_70 . CDS 160274 160565 . - 0 ID=Phyra82327;Parent=Phyra82327;rank=2 scaffold_70 . exon 160274 160565 . - . ID=Phyra82327.2;Parent=Phyra82327;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_70 . CDS 160628 160727 . - 0 ID=Phyra82327;Parent=Phyra82327;rank=1 scaffold_70 . exon 160628 160727 . - . ID=Phyra82327.1;Parent=Phyra82327;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 ensembl protein_coding_gene 162686 165376 . - . ID=Phyra82329;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000057;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 162686 165376 . - . ID=Phyra82329;Parent=Phyra82329;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 162686 165376 . - 0 ID=Phyra82329;Parent=Phyra82329;rank=1 scaffold_70 . exon 162686 165376 . - . ID=Phyra82329.1;Parent=Phyra82329;constitutive=1;rank=1 scaffold_70 . repeat_region 168383 169633 . + . description=GypsyPi-1c_I-int scaffold_70 . biological_region 169901 169905 0.999 + . logic_name=eponine scaffold_70 . repeat_region 170206 171336 . + . description=GypsyPi-1c_I-int scaffold_70 . biological_region 172117 172118 0.999 + . logic_name=eponine scaffold_70 . biological_region 172208 172211 0.999 - . logic_name=eponine scaffold_70 . biological_region 173089 173089 0.999 + . logic_name=eponine scaffold_70 . repeat_region 173163 173440 . - . description=GypsyPi-1c_I-int scaffold_70 . repeat_region 174064 174832 . - . description=GypsyPi-1c_I-int scaffold_70 ensembl protein_coding_gene 168130 171349 . + . ID=Phyra82330;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000058;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 168130 171349 . + . ID=Phyra82330;Parent=Phyra82330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 168130 168132 . + 0 ID=Phyra82330;Parent=Phyra82330;rank=1 scaffold_70 . exon 168130 168132 . + . ID=Phyra82330.1;Parent=Phyra82330;constitutive=1;rank=1 scaffold_70 . CDS 168262 168391 . + 0 ID=Phyra82330;Parent=Phyra82330;rank=2 scaffold_70 . exon 168262 168391 . + . ID=Phyra82330.2;Parent=Phyra82330;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_70 . CDS 168665 169094 . + 0 ID=Phyra82330;Parent=Phyra82330;rank=3 scaffold_70 . exon 168665 169094 . + . ID=Phyra82330.3;Parent=Phyra82330;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_70 . CDS 169139 169342 . + 0 ID=Phyra82330;Parent=Phyra82330;rank=4 scaffold_70 . exon 169139 169342 . + . ID=Phyra82330.4;Parent=Phyra82330;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_70 . CDS 169836 170032 . + 0 ID=Phyra82330;Parent=Phyra82330;rank=5 scaffold_70 . exon 169836 170032 . + . ID=Phyra82330.5;Parent=Phyra82330;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_70 . CDS 170125 171039 . + 0 ID=Phyra82330;Parent=Phyra82330;rank=6 scaffold_70 . exon 170125 171039 . + . ID=Phyra82330.6;Parent=Phyra82330;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_70 . CDS 171222 171349 . + 0 ID=Phyra82330;Parent=Phyra82330;rank=7 scaffold_70 . exon 171222 171349 . + . ID=Phyra82330.7;Parent=Phyra82330;constitutive=1;ensembl_phase=1;rank=7 scaffold_70 . repeat_region 175981 176030 . ? . description=dust scaffold_70 . repeat_region 178749 178756 . ? . description=dust scaffold_70 . repeat_region 181184 181233 . ? . description=dust scaffold_70 ensembl protein_coding_gene 177314 178043 . - . ID=Phyra82331;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000059;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 177314 178043 . - . ID=Phyra82331;Parent=Phyra82331;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 177314 177750 . - 0 ID=Phyra82331;Parent=Phyra82331;rank=2 scaffold_70 . exon 177314 177750 . - . ID=Phyra82331.2;Parent=Phyra82331;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 177920 178043 . - 0 ID=Phyra82331;Parent=Phyra82331;rank=1 scaffold_70 . exon 177920 178043 . - . ID=Phyra82331.1;Parent=Phyra82331;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 ensembl protein_coding_gene 184626 185339 . + . ID=Phyra82332;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000060;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 184626 185339 . + . ID=Phyra82332;Parent=Phyra82332;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 184626 185339 . + 0 ID=Phyra82332;Parent=Phyra82332;rank=1 scaffold_70 . exon 184626 185339 . + . ID=Phyra82332.1;Parent=Phyra82332;constitutive=1;rank=1 scaffold_70 . biological_region 184711 184712 0.999 - . logic_name=eponine scaffold_70 . biological_region 184925 184930 0.999 + . logic_name=eponine scaffold_70 . biological_region 185165 185168 0.999 - . logic_name=eponine scaffold_70 . biological_region 185952 185958 0.999 + . logic_name=eponine scaffold_70 . biological_region 185986 185987 0.999 + . logic_name=eponine scaffold_70 . repeat_region 186877 186901 . ? . description=trf scaffold_70 ensembl protein_coding_gene 186036 187222 . + . ID=Phyra82333;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000061;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 186036 187222 . + . ID=Phyra82333;Parent=Phyra82333;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 186036 186180 . + 0 ID=Phyra82333;Parent=Phyra82333;rank=1 scaffold_70 . exon 186036 186180 . + . ID=Phyra82333.1;Parent=Phyra82333;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 186251 186258 . + 0 ID=Phyra82333;Parent=Phyra82333;rank=2 scaffold_70 . exon 186251 186258 . + . ID=Phyra82333.2;Parent=Phyra82333;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 186331 186376 . + 0 ID=Phyra82333;Parent=Phyra82333;rank=3 scaffold_70 . exon 186331 186376 . + . ID=Phyra82333.3;Parent=Phyra82333;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_70 . CDS 186436 186536 . + 0 ID=Phyra82333;Parent=Phyra82333;rank=4 scaffold_70 . exon 186436 186536 . + . ID=Phyra82333.4;Parent=Phyra82333;constitutive=1;ensembl_phase=1;rank=4 scaffold_70 . CDS 186617 187222 . + 0 ID=Phyra82333;Parent=Phyra82333;rank=5 scaffold_70 . exon 186617 187222 . + . ID=Phyra82333.5;Parent=Phyra82333;constitutive=1;rank=5 scaffold_70 ensembl protein_coding_gene 190271 193197 . + . ID=Phyra96305;biotype=protein_coding;external_name=C_scaffold_70000028;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 190271 193197 . + . ID=Phyra96305;Parent=Phyra96305;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 190271 190413 . + 0 ID=Phyra96305;Parent=Phyra96305;rank=1 scaffold_70 . exon 190271 190413 . + . ID=Phyra96305.1;Parent=Phyra96305;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . CDS 190450 190757 . + 0 ID=Phyra96305;Parent=Phyra96305;rank=2 scaffold_70 . exon 190450 190757 . + . ID=Phyra96305.2;Parent=Phyra96305;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 190826 191030 . + 0 ID=Phyra96305;Parent=Phyra96305;rank=3 scaffold_70 . exon 190826 191030 . + . ID=Phyra96305.3;Parent=Phyra96305;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_70 . CDS 191486 191704 . + 0 ID=Phyra96305;Parent=Phyra96305;rank=4 scaffold_70 . exon 191486 191704 . + . ID=Phyra96305.4;Parent=Phyra96305;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_70 . CDS 191765 191854 . + 0 ID=Phyra96305;Parent=Phyra96305;rank=5 scaffold_70 . exon 191765 191854 . + . ID=Phyra96305.5;Parent=Phyra96305;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_70 . CDS 191934 192152 . + 0 ID=Phyra96305;Parent=Phyra96305;rank=6 scaffold_70 . exon 191934 192152 . + . ID=Phyra96305.6;Parent=Phyra96305;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_70 . CDS 192219 192382 . + 0 ID=Phyra96305;Parent=Phyra96305;rank=7 scaffold_70 . exon 192219 192382 . + . ID=Phyra96305.7;Parent=Phyra96305;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_70 . CDS 192445 192627 . + 0 ID=Phyra96305;Parent=Phyra96305;rank=8 scaffold_70 . exon 192445 192627 . + . ID=Phyra96305.8;Parent=Phyra96305;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_70 . CDS 192693 192789 . + 0 ID=Phyra96305;Parent=Phyra96305;rank=9 scaffold_70 . exon 192693 192789 . + . ID=Phyra96305.9;Parent=Phyra96305;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_70 . CDS 192870 193197 . + 0 ID=Phyra96305;Parent=Phyra96305;rank=10 scaffold_70 . exon 192870 193197 . + . ID=Phyra96305.10;Parent=Phyra96305;constitutive=1;ensembl_phase=2;rank=10 scaffold_70 ensembl protein_coding_gene 201699 201896 . - . ID=Phyra52534;biotype=protein_coding;external_name=gwEuk.70.1.1;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 201699 201896 . - . ID=Phyra52534;Parent=Phyra52534;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 201699 201896 . - 0 ID=Phyra52534;Parent=Phyra52534;rank=1 scaffold_70 . exon 201699 201896 . - . ID=Phyra52534.1;Parent=Phyra52534;constitutive=1;rank=1 scaffold_70 . repeat_region 204805 204836 . ? . description=trf scaffold_70 . repeat_region 208021 208028 . ? . description=dust scaffold_70 . biological_region 212800 212801 0.999 + . logic_name=eponine scaffold_70 . biological_region 212814 212821 0.999 + . logic_name=eponine scaffold_70 ensembl protein_coding_gene 208876 210620 . + . ID=Phyra82336;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000064;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 208876 210620 . + . ID=Phyra82336;Parent=Phyra82336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 208876 209555 . + 0 ID=Phyra82336;Parent=Phyra82336;rank=1 scaffold_70 . exon 208876 209555 . + . ID=Phyra82336.1;Parent=Phyra82336;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . CDS 209615 210620 . + 0 ID=Phyra82336;Parent=Phyra82336;rank=2 scaffold_70 . exon 209615 210620 . + . ID=Phyra82336.2;Parent=Phyra82336;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 ensembl protein_coding_gene 211418 212389 . - . ID=Phyra82337;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000065;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 211418 212389 . - . ID=Phyra82337;Parent=Phyra82337;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 211418 212389 . - 0 ID=Phyra82337;Parent=Phyra82337;rank=1 scaffold_70 . exon 211418 212389 . - . ID=Phyra82337.1;Parent=Phyra82337;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 212691 213023 . + . ID=Phyra82338;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000066;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 212691 213023 . + . ID=Phyra82338;Parent=Phyra82338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 212691 213023 . + 0 ID=Phyra82338;Parent=Phyra82338;rank=1 scaffold_70 . exon 212691 213023 . + . ID=Phyra82338.1;Parent=Phyra82338;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 204437 207386 . - . ID=Phyra96306;biotype=protein_coding;external_name=C_scaffold_70000029;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 204437 207386 . - . ID=Phyra96306;Parent=Phyra96306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 204437 204621 . - 0 ID=Phyra96306;Parent=Phyra96306;rank=5 scaffold_70 . exon 204437 204621 . - . ID=Phyra96306.5;Parent=Phyra96306;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_70 . CDS 204880 205585 . - 0 ID=Phyra96306;Parent=Phyra96306;rank=4 scaffold_70 . exon 204880 205585 . - . ID=Phyra96306.4;Parent=Phyra96306;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_70 . CDS 205735 205959 . - 0 ID=Phyra96306;Parent=Phyra96306;rank=3 scaffold_70 . exon 205735 205959 . - . ID=Phyra96306.3;Parent=Phyra96306;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_70 . CDS 206312 206769 . - 0 ID=Phyra96306;Parent=Phyra96306;rank=2 scaffold_70 . exon 206312 206769 . - . ID=Phyra96306.2;Parent=Phyra96306;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 206797 207386 . - 0 ID=Phyra96306;Parent=Phyra96306;rank=1 scaffold_70 . exon 206797 207386 . - . ID=Phyra96306.1;Parent=Phyra96306;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . repeat_region 219689 219838 . + . description=Polinton-1_PI scaffold_70 ensembl protein_coding_gene 217252 219121 . + . ID=Phyra52540;biotype=protein_coding;external_name=gwEuk.70.7.1;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 217252 219121 . + . ID=Phyra52540;Parent=Phyra52540;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 217252 217788 . + 0 ID=Phyra52540;Parent=Phyra52540;rank=1 scaffold_70 . exon 217252 217788 . + . ID=Phyra52540.1;Parent=Phyra52540;constitutive=1;rank=1 scaffold_70 . CDS 217861 217979 . + 0 ID=Phyra52540;Parent=Phyra52540;rank=2 scaffold_70 . exon 217861 217979 . + . ID=Phyra52540.2;Parent=Phyra52540;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_70 . CDS 218041 218125 . + 0 ID=Phyra52540;Parent=Phyra52540;rank=3 scaffold_70 . exon 218041 218125 . + . ID=Phyra52540.3;Parent=Phyra52540;constitutive=1;ensembl_phase=2;rank=3 scaffold_70 . CDS 218228 218475 . + 0 ID=Phyra52540;Parent=Phyra52540;rank=4 scaffold_70 . exon 218228 218475 . + . ID=Phyra52540.4;Parent=Phyra52540;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_70 . CDS 218548 218647 . + 0 ID=Phyra52540;Parent=Phyra52540;rank=5 scaffold_70 . exon 218548 218647 . + . ID=Phyra52540.5;Parent=Phyra52540;constitutive=1;ensembl_phase=2;rank=5 scaffold_70 . CDS 218729 219121 . + 0 ID=Phyra52540;Parent=Phyra52540;rank=6 scaffold_70 . exon 218729 219121 . + . ID=Phyra52540.6;Parent=Phyra52540;constitutive=1;rank=6 scaffold_70 ensembl protein_coding_gene 216276 216792 . - . ID=Phyra82339;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000067;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 216276 216792 . - . ID=Phyra82339;Parent=Phyra82339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 216276 216322 . - 0 ID=Phyra82339;Parent=Phyra82339;rank=2 scaffold_70 . exon 216276 216322 . - . ID=Phyra82339.2;Parent=Phyra82339;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 216396 216792 . - 0 ID=Phyra82339;Parent=Phyra82339;rank=1 scaffold_70 . exon 216396 216792 . - . ID=Phyra82339.1;Parent=Phyra82339;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 ensembl protein_coding_gene 221633 223279 . - . ID=Phyra82341;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000069;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 221633 223279 . - . ID=Phyra82341;Parent=Phyra82341;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 221633 223279 . - 0 ID=Phyra82341;Parent=Phyra82341;rank=1 scaffold_70 . exon 221633 223279 . - . ID=Phyra82341.1;Parent=Phyra82341;constitutive=1;rank=1 scaffold_70 . repeat_region 227099 227143 . ? . description=trf scaffold_70 . repeat_region 227348 227367 . ? . description=trf scaffold_70 . biological_region 228595 228597 0.999 + . logic_name=eponine scaffold_70 . biological_region 228705 228710 0.999 - . logic_name=eponine scaffold_70 . repeat_region 230045 230052 . ? . description=dust scaffold_70 ensembl protein_coding_gene 223796 224760 . + . ID=Phyra82342;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000070;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 223796 224760 . + . ID=Phyra82342;Parent=Phyra82342;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 223796 224656 . + 0 ID=Phyra82342;Parent=Phyra82342;rank=1 scaffold_70 . exon 223796 224656 . + . ID=Phyra82342.1;Parent=Phyra82342;constitutive=1;rank=1 scaffold_70 . CDS 224746 224760 . + 0 ID=Phyra82342;Parent=Phyra82342;rank=2 scaffold_70 . exon 224746 224760 . + . ID=Phyra82342.2;Parent=Phyra82342;constitutive=1;rank=2 scaffold_70 ensembl protein_coding_gene 226605 228104 . + . ID=Phyra82343;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000071;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 226605 228104 . + . ID=Phyra82343;Parent=Phyra82343;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 226605 228104 . + 0 ID=Phyra82343;Parent=Phyra82343;rank=1 scaffold_70 . exon 226605 228104 . + . ID=Phyra82343.1;Parent=Phyra82343;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 228496 229971 . + . ID=Phyra82344;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000072;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 228496 229971 . + . ID=Phyra82344;Parent=Phyra82344;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 228496 229971 . + 0 ID=Phyra82344;Parent=Phyra82344;rank=1 scaffold_70 . exon 228496 229971 . + . ID=Phyra82344.1;Parent=Phyra82344;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 230184 231190 . + . ID=Phyra82345;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000073;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 230184 231190 . + . ID=Phyra82345;Parent=Phyra82345;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 230184 230364 . + 0 ID=Phyra82345;Parent=Phyra82345;rank=1 scaffold_70 . exon 230184 230364 . + . ID=Phyra82345.1;Parent=Phyra82345;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 230439 231190 . + 0 ID=Phyra82345;Parent=Phyra82345;rank=2 scaffold_70 . exon 230439 231190 . + . ID=Phyra82345.2;Parent=Phyra82345;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 ensembl protein_coding_gene 231869 235100 . - . ID=Phyra96309;biotype=protein_coding;external_name=C_scaffold_70000032;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 231869 235100 . - . ID=Phyra96309;Parent=Phyra96309;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 231869 231888 . - 0 ID=Phyra96309;Parent=Phyra96309;rank=3 scaffold_70 . exon 231869 231888 . - . ID=Phyra96309.3;Parent=Phyra96309;constitutive=1;ensembl_phase=1;rank=3 scaffold_70 . CDS 231974 232329 . - 0 ID=Phyra96309;Parent=Phyra96309;rank=2 scaffold_70 . exon 231974 232329 . - . ID=Phyra96309.2;Parent=Phyra96309;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 232552 235100 . - 0 ID=Phyra96309;Parent=Phyra96309;rank=1 scaffold_70 . exon 232552 235100 . - . ID=Phyra96309.1;Parent=Phyra96309;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 ensembl protein_coding_gene 240481 243361 . - . ID=Phyra82349;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000077;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 240481 243361 . - . ID=Phyra82349;Parent=Phyra82349;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 240481 241260 . - 0 ID=Phyra82349;Parent=Phyra82349;rank=3 scaffold_70 . exon 240481 241260 . - . ID=Phyra82349.3;Parent=Phyra82349;constitutive=1;rank=3 scaffold_70 . CDS 241328 243100 . - 0 ID=Phyra82349;Parent=Phyra82349;rank=2 scaffold_70 . exon 241328 243100 . - . ID=Phyra82349.2;Parent=Phyra82349;constitutive=1;rank=2 scaffold_70 . CDS 243131 243361 . - 0 ID=Phyra82349;Parent=Phyra82349;rank=1 scaffold_70 ensembl protein_coding_gene 235810 237059 . + . ID=Phyra96310;biotype=protein_coding;external_name=C_scaffold_70000033;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 235810 237059 . + . ID=Phyra96310;Parent=Phyra96310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 235810 236005 . + 0 ID=Phyra96310;Parent=Phyra96310;rank=1 scaffold_70 . exon 235810 236005 . + . ID=Phyra96310.1;Parent=Phyra96310;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 236035 237059 . + 0 ID=Phyra96310;Parent=Phyra96310;rank=2 scaffold_70 . exon 236035 237059 . + . ID=Phyra96310.2;Parent=Phyra96310;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 ensembl protein_coding_gene 237061 238631 . - . ID=Phyra96311;biotype=protein_coding;external_name=C_scaffold_70000034;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 237061 238631 . - . ID=Phyra96311;Parent=Phyra96311;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 237061 237801 . - 0 ID=Phyra96311;Parent=Phyra96311;rank=4 scaffold_70 . exon 237061 237801 . - . ID=Phyra96311.4;Parent=Phyra96311;constitutive=1;rank=4 scaffold_70 . CDS 238063 238194 . - 0 ID=Phyra96311;Parent=Phyra96311;rank=3 scaffold_70 . exon 238063 238194 . - . ID=Phyra96311.3;Parent=Phyra96311;constitutive=1;rank=3 scaffold_70 . CDS 238369 238469 . - 0 ID=Phyra96311;Parent=Phyra96311;rank=2 scaffold_70 . exon 238369 238469 . - . ID=Phyra96311.2;Parent=Phyra96311;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 238535 238631 . - 0 ID=Phyra96311;Parent=Phyra96311;rank=1 scaffold_70 . exon 238535 238631 . - . ID=Phyra96311.1;Parent=Phyra96311;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 ensembl protein_coding_gene 238953 240024 . + . ID=Phyra96312;biotype=protein_coding;external_name=C_scaffold_70000035;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 238953 240024 . + . ID=Phyra96312;Parent=Phyra96312;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 238953 239297 . + 0 ID=Phyra96312;Parent=Phyra96312;rank=1 scaffold_70 . exon 238953 239297 . + . ID=Phyra96312.1;Parent=Phyra96312;constitutive=1;rank=1 scaffold_70 . CDS 239363 239666 . + 0 ID=Phyra96312;Parent=Phyra96312;rank=2 scaffold_70 . exon 239363 239666 . + . ID=Phyra96312.2;Parent=Phyra96312;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_70 . CDS 239993 240024 . + 0 ID=Phyra96312;Parent=Phyra96312;rank=3 scaffold_70 . exon 239993 240024 . + . ID=Phyra96312.3;Parent=Phyra96312;constitutive=1;ensembl_phase=1;rank=3 scaffold_70 . repeat_region 244178 244205 . ? . description=trf scaffold_70 . biological_region 248941 248948 0.999 - . logic_name=eponine scaffold_70 . biological_region 250861 250863 0.999 - . logic_name=eponine scaffold_70 . exon 243131 243361 . - . ID=Phyra82349.1;Parent=Phyra82349;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 243626 247891 . - . ID=Phyra82350;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000078;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 243626 247891 . - . ID=Phyra82350;Parent=Phyra82350;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 243626 245287 . - 0 ID=Phyra82350;Parent=Phyra82350;rank=4 scaffold_70 . exon 243626 245287 . - . ID=Phyra82350.4;Parent=Phyra82350;constitutive=1;rank=4 scaffold_70 . CDS 245370 247314 . - 0 ID=Phyra82350;Parent=Phyra82350;rank=3 scaffold_70 . exon 245370 247314 . - . ID=Phyra82350.3;Parent=Phyra82350;constitutive=1;ensembl_phase=2;rank=3 scaffold_70 . CDS 247376 247761 . - 0 ID=Phyra82350;Parent=Phyra82350;rank=2 scaffold_70 . exon 247376 247761 . - . ID=Phyra82350.2;Parent=Phyra82350;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_70 . CDS 247826 247891 . - 0 ID=Phyra82350;Parent=Phyra82350;rank=1 scaffold_70 . exon 247826 247891 . - . ID=Phyra82350.1;Parent=Phyra82350;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 248117 251068 . + . ID=Phyra82351;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000079;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 248117 251068 . + . ID=Phyra82351;Parent=Phyra82351;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 248117 248575 . + 0 ID=Phyra82351;Parent=Phyra82351;rank=1 scaffold_70 . exon 248117 248575 . + . ID=Phyra82351.1;Parent=Phyra82351;constitutive=1;rank=1 scaffold_70 . CDS 248635 249247 . + 0 ID=Phyra82351;Parent=Phyra82351;rank=2 scaffold_70 . exon 248635 249247 . + . ID=Phyra82351.2;Parent=Phyra82351;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_70 . CDS 249360 249376 . + 0 ID=Phyra82351;Parent=Phyra82351;rank=3 scaffold_70 . exon 249360 249376 . + . ID=Phyra82351.3;Parent=Phyra82351;constitutive=1;ensembl_phase=1;rank=3 scaffold_70 . CDS 249555 249644 . + 0 ID=Phyra82351;Parent=Phyra82351;rank=4 scaffold_70 . exon 249555 249644 . + . ID=Phyra82351.4;Parent=Phyra82351;constitutive=1;rank=4 scaffold_70 . CDS 249791 251068 . + 0 ID=Phyra82351;Parent=Phyra82351;rank=5 scaffold_70 . exon 249791 251068 . + . ID=Phyra82351.5;Parent=Phyra82351;constitutive=1;rank=5 scaffold_70 ensembl protein_coding_gene 251509 254952 . + . ID=Phyra96315;biotype=protein_coding;external_name=C_scaffold_70000038;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 251509 254952 . + . ID=Phyra96315;Parent=Phyra96315;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 251509 252178 . + 0 ID=Phyra96315;Parent=Phyra96315;rank=1 scaffold_70 . exon 251509 252178 . + . ID=Phyra96315.1;Parent=Phyra96315;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 252260 252476 . + 0 ID=Phyra96315;Parent=Phyra96315;rank=2 scaffold_70 . exon 252260 252476 . + . ID=Phyra96315.2;Parent=Phyra96315;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_70 . CDS 252648 252869 . + 0 ID=Phyra96315;Parent=Phyra96315;rank=3 scaffold_70 . exon 252648 252869 . + . ID=Phyra96315.3;Parent=Phyra96315;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_70 . CDS 252957 253094 . + 0 ID=Phyra96315;Parent=Phyra96315;rank=4 scaffold_70 . CDS 253164 253637 . + 0 ID=Phyra96315;Parent=Phyra96315;rank=5 scaffold_70 . CDS 253700 253704 . + 0 ID=Phyra96315;Parent=Phyra96315;rank=6 scaffold_70 . CDS 254028 254488 . + 0 ID=Phyra96315;Parent=Phyra96315;rank=7 scaffold_70 . CDS 254562 254640 . + 0 ID=Phyra96315;Parent=Phyra96315;rank=8 scaffold_70 . CDS 254711 254952 . + 0 ID=Phyra96315;Parent=Phyra96315;rank=9 scaffold_70 . repeat_region 258238 258245 . ? . description=dust scaffold_70 ensembl protein_coding_gene 255130 257959 . - . ID=Phyra82355;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000083;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 255130 257959 . - . ID=Phyra82355;Parent=Phyra82355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 255130 256662 . - 0 ID=Phyra82355;Parent=Phyra82355;rank=5 scaffold_70 . exon 255130 256662 . - . ID=Phyra82355.5;Parent=Phyra82355;constitutive=1;rank=5 scaffold_70 . CDS 256909 256977 . - 0 ID=Phyra82355;Parent=Phyra82355;rank=4 scaffold_70 . exon 256909 256977 . - . ID=Phyra82355.4;Parent=Phyra82355;constitutive=1;rank=4 scaffold_70 . CDS 257043 257098 . - 0 ID=Phyra82355;Parent=Phyra82355;rank=3 scaffold_70 . exon 257043 257098 . - . ID=Phyra82355.3;Parent=Phyra82355;constitutive=1;ensembl_phase=1;rank=3 scaffold_70 . CDS 257175 257776 . - 0 ID=Phyra82355;Parent=Phyra82355;rank=2 scaffold_70 . exon 257175 257776 . - . ID=Phyra82355.2;Parent=Phyra82355;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 257859 257959 . - 0 ID=Phyra82355;Parent=Phyra82355;rank=1 scaffold_70 . exon 257859 257959 . - . ID=Phyra82355.1;Parent=Phyra82355;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 ensembl protein_coding_gene 258453 260246 . - . ID=Phyra82356;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000084;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 258453 260246 . - . ID=Phyra82356;Parent=Phyra82356;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 258453 260246 . - 0 ID=Phyra82356;Parent=Phyra82356;rank=1 scaffold_70 . exon 258453 260246 . - . ID=Phyra82356.1;Parent=Phyra82356;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 261235 261853 . - . ID=Phyra82357;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000085;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 261235 261853 . - . ID=Phyra82357;Parent=Phyra82357;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 261235 261409 . - 0 ID=Phyra82357;Parent=Phyra82357;rank=2 scaffold_70 . exon 261235 261409 . - . ID=Phyra82357.2;Parent=Phyra82357;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 261498 261853 . - 0 ID=Phyra82357;Parent=Phyra82357;rank=1 scaffold_70 . exon 261498 261853 . - . ID=Phyra82357.1;Parent=Phyra82357;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . exon 252957 253094 . + . ID=Phyra96315.4;Parent=Phyra96315;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_70 . exon 253164 253637 . + . ID=Phyra96315.5;Parent=Phyra96315;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_70 . exon 253700 253704 . + . ID=Phyra96315.6;Parent=Phyra96315;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_70 . exon 254028 254488 . + . ID=Phyra96315.7;Parent=Phyra96315;constitutive=1;ensembl_phase=1;rank=7 scaffold_70 . exon 254562 254640 . + . ID=Phyra96315.8;Parent=Phyra96315;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_70 . exon 254711 254952 . + . ID=Phyra96315.9;Parent=Phyra96315;constitutive=1;ensembl_phase=1;rank=9 scaffold_70 . repeat_region 264750 264781 . ? . description=trf scaffold_70 . repeat_region 267389 267414 . ? . description=trf scaffold_70 . repeat_region 267684 267704 . ? . description=trf scaffold_70 . repeat_region 271776 271822 . ? . description=trf scaffold_70 ensembl protein_coding_gene 263123 264954 . + . ID=Phyra82358;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000086;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 263123 264954 . + . ID=Phyra82358;Parent=Phyra82358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 263123 263761 . + 0 ID=Phyra82358;Parent=Phyra82358;rank=1 scaffold_70 . exon 263123 263761 . + . ID=Phyra82358.1;Parent=Phyra82358;constitutive=1;rank=1 scaffold_70 . CDS 263841 264648 . + 0 ID=Phyra82358;Parent=Phyra82358;rank=2 scaffold_70 . exon 263841 264648 . + . ID=Phyra82358.2;Parent=Phyra82358;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_70 . CDS 264721 264859 . + 0 ID=Phyra82358;Parent=Phyra82358;rank=3 scaffold_70 . exon 264721 264859 . + . ID=Phyra82358.3;Parent=Phyra82358;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_70 . CDS 264945 264954 . + 0 ID=Phyra82358;Parent=Phyra82358;rank=4 scaffold_70 . exon 264945 264954 . + . ID=Phyra82358.4;Parent=Phyra82358;constitutive=1;ensembl_phase=2;rank=4 scaffold_70 ensembl protein_coding_gene 265035 268398 . - . ID=Phyra82359;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000087;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 265035 268398 . - . ID=Phyra82359;Parent=Phyra82359;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 265035 265694 . - 0 ID=Phyra82359;Parent=Phyra82359;rank=8 scaffold_70 . exon 265035 265694 . - . ID=Phyra82359.8;Parent=Phyra82359;constitutive=1;rank=8 scaffold_70 . CDS 265775 266223 . - 0 ID=Phyra82359;Parent=Phyra82359;rank=7 scaffold_70 . exon 265775 266223 . - . ID=Phyra82359.7;Parent=Phyra82359;constitutive=1;ensembl_phase=1;rank=7 scaffold_70 . CDS 266368 266481 . - 0 ID=Phyra82359;Parent=Phyra82359;rank=6 scaffold_70 . exon 266368 266481 . - . ID=Phyra82359.6;Parent=Phyra82359;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_70 . CDS 266620 267650 . - 0 ID=Phyra82359;Parent=Phyra82359;rank=5 scaffold_70 . exon 266620 267650 . - . ID=Phyra82359.5;Parent=Phyra82359;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_70 . CDS 267743 267924 . - 0 ID=Phyra82359;Parent=Phyra82359;rank=4 scaffold_70 . exon 267743 267924 . - . ID=Phyra82359.4;Parent=Phyra82359;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_70 . CDS 267993 268101 . - 0 ID=Phyra82359;Parent=Phyra82359;rank=3 scaffold_70 . exon 267993 268101 . - . ID=Phyra82359.3;Parent=Phyra82359;constitutive=1;ensembl_phase=2;rank=3 scaffold_70 . CDS 268179 268264 . - 0 ID=Phyra82359;Parent=Phyra82359;rank=2 scaffold_70 . exon 268179 268264 . - . ID=Phyra82359.2;Parent=Phyra82359;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_70 . CDS 268342 268398 . - 0 ID=Phyra82359;Parent=Phyra82359;rank=1 scaffold_70 . exon 268342 268398 . - . ID=Phyra82359.1;Parent=Phyra82359;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 269283 270082 . - . ID=Phyra82360;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000088;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 269283 270082 . - . ID=Phyra82360;Parent=Phyra82360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 269283 269314 . - 0 ID=Phyra82360;Parent=Phyra82360;rank=2 scaffold_70 . exon 269283 269314 . - . ID=Phyra82360.2;Parent=Phyra82360;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 269422 270082 . - 0 ID=Phyra82360;Parent=Phyra82360;rank=1 scaffold_70 . exon 269422 270082 . - . ID=Phyra82360.1;Parent=Phyra82360;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 ensembl protein_coding_gene 270218 271993 . - . ID=Phyra82361;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_70000089;logic_name=jgi_phyra1 scaffold_70 ensembl transcript 270218 271993 . - . ID=Phyra82361;Parent=Phyra82361;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_70 . CDS 270218 271993 . - 0 ID=Phyra82361;Parent=Phyra82361;rank=1 scaffold_70 . exon 270218 271993 . - . ID=Phyra82361.1;Parent=Phyra82361;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_69 1 280174 scaffold_69 . repeat_region 2103 2152 . ? . description=dust scaffold_69 . biological_region 6047 6050 0.999 + . logic_name=eponine scaffold_69 . biological_region 7560 7562 0.999 + . logic_name=eponine scaffold_69 . biological_region 7611 7614 0.999 + . logic_name=eponine scaffold_69 . biological_region 7712 7717 0.999 + . logic_name=eponine scaffold_69 . biological_region 7768 7769 0.999 + . logic_name=eponine scaffold_69 . repeat_region 8248 8562 . + . description=GypsyPi-1c_I-int scaffold_69 . repeat_region 8563 8775 . ? . description=dust scaffold_69 ensembl pseudogene 234 742 . + . ID=Phyra52386;biotype=pseudogene;external_name=gwEuk.69.26.1;logic_name=jgi_phyra1 scaffold_69 ensembl pseudogene 234 742 . + . ID=Phyra52386;Parent=Phyra52386;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_69 . exon 234 742 . + . ID=Phyra52386.1;Parent=Phyra52386;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 ensembl protein_coding_gene 5767 8515 . + . ID=Phyra82177;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000001;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 5767 8515 . + . ID=Phyra82177;Parent=Phyra82177;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 5767 6648 . + 0 ID=Phyra82177;Parent=Phyra82177;rank=1 scaffold_69 . exon 5767 6648 . + . ID=Phyra82177.1;Parent=Phyra82177;constitutive=1;rank=1 scaffold_69 . CDS 6771 6960 . + 0 ID=Phyra82177;Parent=Phyra82177;rank=2 scaffold_69 . exon 6771 6960 . + . ID=Phyra82177.2;Parent=Phyra82177;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_69 . CDS 7114 7183 . + 0 ID=Phyra82177;Parent=Phyra82177;rank=3 scaffold_69 . exon 7114 7183 . + . ID=Phyra82177.3;Parent=Phyra82177;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_69 . CDS 7521 8373 . + 0 ID=Phyra82177;Parent=Phyra82177;rank=4 scaffold_69 . exon 7521 8373 . + . ID=Phyra82177.4;Parent=Phyra82177;constitutive=1;ensembl_phase=2;rank=4 scaffold_69 . CDS 8480 8515 . + 0 ID=Phyra82177;Parent=Phyra82177;rank=5 scaffold_69 . exon 8480 8515 . + . ID=Phyra82177.5;Parent=Phyra82177;constitutive=1;rank=5 scaffold_69 ensembl protein_coding_gene 9594 9941 . - . ID=Phyra82178;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000002;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 9594 9941 . - . ID=Phyra82178;Parent=Phyra82178;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 9594 9941 . - 0 ID=Phyra82178;Parent=Phyra82178;rank=1 scaffold_69 . exon 9594 9941 . - . ID=Phyra82178.1;Parent=Phyra82178;constitutive=1;rank=1 scaffold_69 . repeat_region 9912 9955 . ? . description=trf scaffold_69 . repeat_region 9912 9970 . ? . description=trf scaffold_69 ensembl protein_coding_gene 12500 13669 . + . ID=Phyra82179;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000003;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 12500 13669 . + . ID=Phyra82179;Parent=Phyra82179;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 12500 13669 . + 0 ID=Phyra82179;Parent=Phyra82179;rank=1 scaffold_69 . exon 12500 13669 . + . ID=Phyra82179.1;Parent=Phyra82179;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 15885 23564 . + . ID=Phyra96256;biotype=protein_coding;external_name=C_scaffold_69000001;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 15885 23564 . + . ID=Phyra96256;Parent=Phyra96256;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 15885 16470 . + 0 ID=Phyra96256;Parent=Phyra96256;rank=1 scaffold_69 . exon 15885 16470 . + . ID=Phyra96256.1;Parent=Phyra96256;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 . CDS 16576 16794 . + 0 ID=Phyra96256;Parent=Phyra96256;rank=2 scaffold_69 . exon 16576 16794 . + . ID=Phyra96256.2;Parent=Phyra96256;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_69 . CDS 17085 17543 . + 0 ID=Phyra96256;Parent=Phyra96256;rank=3 scaffold_69 . exon 17085 17543 . + . ID=Phyra96256.3;Parent=Phyra96256;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_69 . CDS 17574 18005 . + 0 ID=Phyra96256;Parent=Phyra96256;rank=4 scaffold_69 . exon 17574 18005 . + . ID=Phyra96256.4;Parent=Phyra96256;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_69 . CDS 18045 18258 . + 0 ID=Phyra96256;Parent=Phyra96256;rank=5 scaffold_69 . exon 18045 18258 . + . ID=Phyra96256.5;Parent=Phyra96256;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_69 . CDS 18298 18514 . + 0 ID=Phyra96256;Parent=Phyra96256;rank=6 scaffold_69 . exon 18298 18514 . + . ID=Phyra96256.6;Parent=Phyra96256;constitutive=1;ensembl_phase=2;rank=6 scaffold_69 . CDS 18845 19534 . + 0 ID=Phyra96256;Parent=Phyra96256;rank=7 scaffold_69 . exon 18845 19534 . + . ID=Phyra96256.7;Parent=Phyra96256;constitutive=1;rank=7 scaffold_69 . CDS 19580 19837 . + 0 ID=Phyra96256;Parent=Phyra96256;rank=8 scaffold_69 . CDS 19926 22173 . + 0 ID=Phyra96256;Parent=Phyra96256;rank=9 scaffold_69 . CDS 22222 23564 . + 0 ID=Phyra96256;Parent=Phyra96256;rank=10 scaffold_69 . repeat_region 25118 25125 . ? . description=dust scaffold_69 . biological_region 25620 25621 0.999 - . logic_name=eponine scaffold_69 ensembl protein_coding_gene 23745 25088 . - . ID=Phyra82181;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000005;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 23745 25088 . - . ID=Phyra82181;Parent=Phyra82181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 23745 25088 . - 0 ID=Phyra82181;Parent=Phyra82181;rank=1 scaffold_69 . exon 23745 25088 . - . ID=Phyra82181.1;Parent=Phyra82181;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 25344 30938 . + . ID=Phyra82182;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000006;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 25344 30938 . + . ID=Phyra82182;Parent=Phyra82182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 25344 30938 . + 0 ID=Phyra82182;Parent=Phyra82182;rank=1 scaffold_69 . exon 25344 30938 . + . ID=Phyra82182.1;Parent=Phyra82182;constitutive=1;rank=1 scaffold_69 . exon 19580 19837 . + . ID=Phyra96256.8;Parent=Phyra96256;constitutive=1;rank=8 scaffold_69 . exon 19926 22173 . + . ID=Phyra96256.9;Parent=Phyra96256;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_69 . exon 22222 23564 . + . ID=Phyra96256.10;Parent=Phyra96256;constitutive=1;ensembl_phase=1;rank=10 scaffold_69 . repeat_region 36915 36934 . ? . description=trf scaffold_69 ensembl protein_coding_gene 37613 41494 . - . ID=Phyra52390;biotype=protein_coding;external_name=gwEuk.69.30.1;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 37613 41494 . - . ID=Phyra52390;Parent=Phyra52390;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 37613 38995 . - 0 ID=Phyra52390;Parent=Phyra52390;rank=6 scaffold_69 . exon 37613 38995 . - . ID=Phyra52390.6;Parent=Phyra52390;constitutive=1;rank=6 scaffold_69 . CDS 39071 39197 . - 0 ID=Phyra52390;Parent=Phyra52390;rank=5 scaffold_69 . CDS 39268 40190 . - 0 ID=Phyra52390;Parent=Phyra52390;rank=4 scaffold_69 . CDS 40257 40558 . - 0 ID=Phyra52390;Parent=Phyra52390;rank=3 scaffold_69 . CDS 40649 41335 . - 0 ID=Phyra52390;Parent=Phyra52390;rank=2 scaffold_69 . CDS 41395 41494 . - 0 ID=Phyra52390;Parent=Phyra52390;rank=1 scaffold_69 ensembl protein_coding_gene 31283 36706 . + . ID=Phyra96259;biotype=protein_coding;external_name=C_scaffold_69000004;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 31283 36706 . + . ID=Phyra96259;Parent=Phyra96259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 31283 31942 . + 0 ID=Phyra96259;Parent=Phyra96259;rank=1 scaffold_69 . exon 31283 31942 . + . ID=Phyra96259.1;Parent=Phyra96259;constitutive=1;rank=1 scaffold_69 . CDS 31964 32167 . + 0 ID=Phyra96259;Parent=Phyra96259;rank=2 scaffold_69 . exon 31964 32167 . + . ID=Phyra96259.2;Parent=Phyra96259;constitutive=1;rank=2 scaffold_69 . CDS 32207 32600 . + 0 ID=Phyra96259;Parent=Phyra96259;rank=3 scaffold_69 . exon 32207 32600 . + . ID=Phyra96259.3;Parent=Phyra96259;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_69 . CDS 32631 32807 . + 0 ID=Phyra96259;Parent=Phyra96259;rank=4 scaffold_69 . exon 32631 32807 . + . ID=Phyra96259.4;Parent=Phyra96259;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_69 . CDS 33123 33417 . + 0 ID=Phyra96259;Parent=Phyra96259;rank=5 scaffold_69 . exon 33123 33417 . + . ID=Phyra96259.5;Parent=Phyra96259;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_69 . CDS 33526 33811 . + 0 ID=Phyra96259;Parent=Phyra96259;rank=6 scaffold_69 . exon 33526 33811 . + . ID=Phyra96259.6;Parent=Phyra96259;constitutive=1;ensembl_phase=2;rank=6 scaffold_69 . CDS 33908 33968 . + 0 ID=Phyra96259;Parent=Phyra96259;rank=7 scaffold_69 . exon 33908 33968 . + . ID=Phyra96259.7;Parent=Phyra96259;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_69 . CDS 34335 34607 . + 0 ID=Phyra96259;Parent=Phyra96259;rank=8 scaffold_69 . exon 34335 34607 . + . ID=Phyra96259.8;Parent=Phyra96259;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_69 . CDS 34803 34877 . + 0 ID=Phyra96259;Parent=Phyra96259;rank=9 scaffold_69 . exon 34803 34877 . + . ID=Phyra96259.9;Parent=Phyra96259;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_69 . CDS 34992 35114 . + 0 ID=Phyra96259;Parent=Phyra96259;rank=10 scaffold_69 . exon 34992 35114 . + . ID=Phyra96259.10;Parent=Phyra96259;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_69 . CDS 35658 35806 . + 0 ID=Phyra96259;Parent=Phyra96259;rank=11 scaffold_69 . exon 35658 35806 . + . ID=Phyra96259.11;Parent=Phyra96259;constitutive=1;ensembl_phase=1;rank=11 scaffold_69 . CDS 36077 36343 . + 0 ID=Phyra96259;Parent=Phyra96259;rank=12 scaffold_69 . exon 36077 36343 . + . ID=Phyra96259.12;Parent=Phyra96259;constitutive=1;rank=12 scaffold_69 . CDS 36398 36490 . + 0 ID=Phyra96259;Parent=Phyra96259;rank=13 scaffold_69 . exon 36398 36490 . + . ID=Phyra96259.13;Parent=Phyra96259;constitutive=1;rank=13 scaffold_69 . CDS 36512 36706 . + 0 ID=Phyra96259;Parent=Phyra96259;rank=14 scaffold_69 . exon 36512 36706 . + . ID=Phyra96259.14;Parent=Phyra96259;constitutive=1;rank=14 scaffold_69 . repeat_region 41966 41973 . ? . description=dust scaffold_69 . biological_region 43141 43145 0.999 + . logic_name=eponine scaffold_69 . exon 39071 39197 . - . ID=Phyra52390.5;Parent=Phyra52390;constitutive=1;ensembl_phase=2;rank=5 scaffold_69 . exon 39268 40190 . - . ID=Phyra52390.4;Parent=Phyra52390;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_69 . exon 40257 40558 . - . ID=Phyra52390.3;Parent=Phyra52390;constitutive=1;ensembl_phase=1;rank=3 scaffold_69 . exon 40649 41335 . - . ID=Phyra52390.2;Parent=Phyra52390;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_69 . exon 41395 41494 . - . ID=Phyra52390.1;Parent=Phyra52390;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 ensembl protein_coding_gene 42531 49073 . - . ID=Phyra82188;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000012;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 42531 49073 . - . ID=Phyra82188;Parent=Phyra82188;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 42531 46143 . - 0 ID=Phyra82188;Parent=Phyra82188;rank=4 scaffold_69 . exon 42531 46143 . - . ID=Phyra82188.4;Parent=Phyra82188;constitutive=1;ensembl_phase=2;rank=4 scaffold_69 . CDS 46377 46501 . - 0 ID=Phyra82188;Parent=Phyra82188;rank=3 scaffold_69 . exon 46377 46501 . - . ID=Phyra82188.3;Parent=Phyra82188;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_69 . CDS 46542 48513 . - 0 ID=Phyra82188;Parent=Phyra82188;rank=2 scaffold_69 . exon 46542 48513 . - . ID=Phyra82188.2;Parent=Phyra82188;constitutive=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 48658 49073 . - 0 ID=Phyra82188;Parent=Phyra82188;rank=1 scaffold_69 . repeat_region 51576 51623 . ? . description=trf scaffold_69 . repeat_region 55870 56004 . ? . description=trf scaffold_69 . repeat_region 55884 55991 . ? . description=trf scaffold_69 . repeat_region 56466 56505 . ? . description=trf scaffold_69 . exon 48658 49073 . - . ID=Phyra82188.1;Parent=Phyra82188;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 ensembl protein_coding_gene 51661 52005 . + . ID=Phyra82189;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000013;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 51661 52005 . + . ID=Phyra82189;Parent=Phyra82189;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 51661 52005 . + 0 ID=Phyra82189;Parent=Phyra82189;rank=1 scaffold_69 . exon 51661 52005 . + . ID=Phyra82189.1;Parent=Phyra82189;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 52233 54031 . - . ID=Phyra82190;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000014;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 52233 54031 . - . ID=Phyra82190;Parent=Phyra82190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 52233 53480 . - 0 ID=Phyra82190;Parent=Phyra82190;rank=2 scaffold_69 . exon 52233 53480 . - . ID=Phyra82190.2;Parent=Phyra82190;constitutive=1;rank=2 scaffold_69 . CDS 53657 54031 . - 0 ID=Phyra82190;Parent=Phyra82190;rank=1 scaffold_69 . exon 53657 54031 . - . ID=Phyra82190.1;Parent=Phyra82190;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 54336 55406 . - . ID=Phyra82191;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000015;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 54336 55406 . - . ID=Phyra82191;Parent=Phyra82191;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 54336 54604 . - 0 ID=Phyra82191;Parent=Phyra82191;rank=4 scaffold_69 . exon 54336 54604 . - . ID=Phyra82191.4;Parent=Phyra82191;constitutive=1;ensembl_phase=1;rank=4 scaffold_69 . CDS 54696 54895 . - 0 ID=Phyra82191;Parent=Phyra82191;rank=3 scaffold_69 . exon 54696 54895 . - . ID=Phyra82191.3;Parent=Phyra82191;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_69 . CDS 54965 55070 . - 0 ID=Phyra82191;Parent=Phyra82191;rank=2 scaffold_69 . exon 54965 55070 . - . ID=Phyra82191.2;Parent=Phyra82191;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_69 . CDS 55133 55406 . - 0 ID=Phyra82191;Parent=Phyra82191;rank=1 scaffold_69 . exon 55133 55406 . - . ID=Phyra82191.1;Parent=Phyra82191;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 ensembl protein_coding_gene 55614 58304 . + . ID=Phyra82192;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000016;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 55614 58304 . + . ID=Phyra82192;Parent=Phyra82192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 55614 58304 . + 0 ID=Phyra82192;Parent=Phyra82192;rank=1 scaffold_69 . exon 55614 58304 . + . ID=Phyra82192.1;Parent=Phyra82192;constitutive=1;rank=1 scaffold_69 . biological_region 59418 59421 0.999 + . logic_name=eponine scaffold_69 . biological_region 59486 59489 0.999 + . logic_name=eponine scaffold_69 . biological_region 59733 59733 0.999 + . logic_name=eponine scaffold_69 . biological_region 64200 64204 0.999 - . logic_name=eponine scaffold_69 . biological_region 65195 65197 0.999 - . logic_name=eponine scaffold_69 ensembl protein_coding_gene 58489 59211 . + . ID=Phyra82193;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000017;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 58489 59211 . + . ID=Phyra82193;Parent=Phyra82193;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 58489 59211 . + 0 ID=Phyra82193;Parent=Phyra82193;rank=1 scaffold_69 . exon 58489 59211 . + . ID=Phyra82193.1;Parent=Phyra82193;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 59363 60322 . - . ID=Phyra82194;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000018;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 59363 60322 . - . ID=Phyra82194;Parent=Phyra82194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 59363 60322 . - 0 ID=Phyra82194;Parent=Phyra82194;rank=1 scaffold_69 . exon 59363 60322 . - . ID=Phyra82194.1;Parent=Phyra82194;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 62615 63542 . - . ID=Phyra82195;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000019;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 62615 63542 . - . ID=Phyra82195;Parent=Phyra82195;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 62615 63286 . - 0 ID=Phyra82195;Parent=Phyra82195;rank=2 scaffold_69 . exon 62615 63286 . - . ID=Phyra82195.2;Parent=Phyra82195;constitutive=1;rank=2 scaffold_69 . CDS 63408 63542 . - 0 ID=Phyra82195;Parent=Phyra82195;rank=1 scaffold_69 . exon 63408 63542 . - . ID=Phyra82195.1;Parent=Phyra82195;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 64696 65151 . + . ID=Phyra82196;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000020;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 64696 65151 . + . ID=Phyra82196;Parent=Phyra82196;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 64696 65151 . + 0 ID=Phyra82196;Parent=Phyra82196;rank=1 scaffold_69 . exon 64696 65151 . + . ID=Phyra82196.1;Parent=Phyra82196;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 66848 67888 . + . ID=Phyra82197;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000021;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 66848 67888 . + . ID=Phyra82197;Parent=Phyra82197;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 66848 67888 . + 0 ID=Phyra82197;Parent=Phyra82197;rank=1 scaffold_69 . exon 66848 67888 . + . ID=Phyra82197.1;Parent=Phyra82197;constitutive=1;rank=1 scaffold_69 . repeat_region 70931 70976 . ? . description=trf scaffold_69 . repeat_region 71006 71085 . ? . description=trf scaffold_69 . repeat_region 71111 71187 . ? . description=trf scaffold_69 . repeat_region 71281 71409 . ? . description=trf scaffold_69 . repeat_region 73907 74001 . ? . description=trf scaffold_69 . repeat_region 74736 74814 . ? . description=trf scaffold_69 . repeat_region 76723 76731 . ? . description=dust scaffold_69 ensembl protein_coding_gene 68158 68859 . - . ID=Phyra82198;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000022;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 68158 68859 . - . ID=Phyra82198;Parent=Phyra82198;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 68158 68859 . - 0 ID=Phyra82198;Parent=Phyra82198;rank=1 scaffold_69 . exon 68158 68859 . - . ID=Phyra82198.1;Parent=Phyra82198;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 70580 71464 . + . ID=Phyra82199;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000023;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 70580 71464 . + . ID=Phyra82199;Parent=Phyra82199;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 70580 71464 . + 0 ID=Phyra82199;Parent=Phyra82199;rank=1 scaffold_69 . exon 70580 71464 . + . ID=Phyra82199.1;Parent=Phyra82199;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 71822 72463 . - . ID=Phyra82200;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000024;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 71822 72463 . - . ID=Phyra82200;Parent=Phyra82200;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 71822 72463 . - 0 ID=Phyra82200;Parent=Phyra82200;rank=1 scaffold_69 . exon 71822 72463 . - . ID=Phyra82200.1;Parent=Phyra82200;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 73481 74107 . + . ID=Phyra82201;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000025;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 73481 74107 . + . ID=Phyra82201;Parent=Phyra82201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 73481 74107 . + 0 ID=Phyra82201;Parent=Phyra82201;rank=1 scaffold_69 . exon 73481 74107 . + . ID=Phyra82201.1;Parent=Phyra82201;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 74630 75301 . - . ID=Phyra82202;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000026;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 74630 75301 . - . ID=Phyra82202;Parent=Phyra82202;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 74630 75301 . - 0 ID=Phyra82202;Parent=Phyra82202;rank=1 scaffold_69 . exon 74630 75301 . - . ID=Phyra82202.1;Parent=Phyra82202;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 80978 82501 . + . ID=Phyra72000;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_69000002;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 80978 82501 . + . ID=Phyra72000;Parent=Phyra72000;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 80978 80999 . + 0 ID=Phyra72000;Parent=Phyra72000;rank=1 scaffold_69 . exon 80978 80999 . + . ID=Phyra72000.1;Parent=Phyra72000;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 . CDS 81042 81149 . + 0 ID=Phyra72000;Parent=Phyra72000;rank=2 scaffold_69 . exon 81042 81149 . + . ID=Phyra72000.2;Parent=Phyra72000;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_69 . CDS 81213 82501 . + 0 ID=Phyra72000;Parent=Phyra72000;rank=3 scaffold_69 . exon 81213 82501 . + . ID=Phyra72000.3;Parent=Phyra72000;constitutive=1;ensembl_phase=1;rank=3 scaffold_69 ensembl protein_coding_gene 77366 78901 . - . ID=Phyra82203;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000027;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 77366 78901 . - . ID=Phyra82203;Parent=Phyra82203;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 77366 77523 . - 0 ID=Phyra82203;Parent=Phyra82203;rank=4 scaffold_69 . exon 77366 77523 . - . ID=Phyra82203.4;Parent=Phyra82203;constitutive=1;ensembl_phase=1;rank=4 scaffold_69 . CDS 77603 78491 . - 0 ID=Phyra82203;Parent=Phyra82203;rank=3 scaffold_69 . exon 77603 78491 . - . ID=Phyra82203.3;Parent=Phyra82203;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_69 . CDS 78601 78664 . - 0 ID=Phyra82203;Parent=Phyra82203;rank=2 scaffold_69 . exon 78601 78664 . - . ID=Phyra82203.2;Parent=Phyra82203;constitutive=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 78744 78901 . - 0 ID=Phyra82203;Parent=Phyra82203;rank=1 scaffold_69 . exon 78744 78901 . - . ID=Phyra82203.1;Parent=Phyra82203;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 ensembl protein_coding_gene 79896 80859 . - . ID=Phyra82204;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000028;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 79896 80859 . - . ID=Phyra82204;Parent=Phyra82204;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 79896 79994 . - 0 ID=Phyra82204;Parent=Phyra82204;rank=3 scaffold_69 . exon 79896 79994 . - . ID=Phyra82204.3;Parent=Phyra82204;constitutive=1;rank=3 scaffold_69 . CDS 80185 80501 . - 0 ID=Phyra82204;Parent=Phyra82204;rank=2 scaffold_69 . exon 80185 80501 . - . ID=Phyra82204.2;Parent=Phyra82204;constitutive=1;ensembl_phase=1;rank=2 scaffold_69 . CDS 80538 80859 . - 0 ID=Phyra82204;Parent=Phyra82204;rank=1 scaffold_69 . exon 80538 80859 . - . ID=Phyra82204.1;Parent=Phyra82204;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 ensembl protein_coding_gene 82760 89134 . + . ID=Phyra82206;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000030;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 82760 89134 . + . ID=Phyra82206;Parent=Phyra82206;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 82760 83208 . + 0 ID=Phyra82206;Parent=Phyra82206;rank=1 scaffold_69 . exon 82760 83208 . + . ID=Phyra82206.1;Parent=Phyra82206;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 . CDS 83287 83321 . + 0 ID=Phyra82206;Parent=Phyra82206;rank=2 scaffold_69 . exon 83287 83321 . + . ID=Phyra82206.2;Parent=Phyra82206;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 83616 87021 . + 0 ID=Phyra82206;Parent=Phyra82206;rank=3 scaffold_69 . exon 83616 87021 . + . ID=Phyra82206.3;Parent=Phyra82206;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_69 . CDS 87215 87375 . + 0 ID=Phyra82206;Parent=Phyra82206;rank=4 scaffold_69 . CDS 87708 89134 . + 0 ID=Phyra82206;Parent=Phyra82206;rank=5 scaffold_69 . exon 87215 87375 . + . ID=Phyra82206.4;Parent=Phyra82206;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_69 . exon 87708 89134 . + . ID=Phyra82206.5;Parent=Phyra82206;constitutive=1;ensembl_phase=1;rank=5 scaffold_69 ensembl protein_coding_gene 89669 95917 . - . ID=Phyra82207;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000031;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 89669 95917 . - . ID=Phyra82207;Parent=Phyra82207;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 89669 91258 . - 0 ID=Phyra82207;Parent=Phyra82207;rank=5 scaffold_69 . exon 89669 91258 . - . ID=Phyra82207.5;Parent=Phyra82207;constitutive=1;rank=5 scaffold_69 . CDS 91321 91547 . - 0 ID=Phyra82207;Parent=Phyra82207;rank=4 scaffold_69 . exon 91321 91547 . - . ID=Phyra82207.4;Parent=Phyra82207;constitutive=1;ensembl_phase=1;rank=4 scaffold_69 . CDS 91723 94548 . - 0 ID=Phyra82207;Parent=Phyra82207;rank=3 scaffold_69 . exon 91723 94548 . - . ID=Phyra82207.3;Parent=Phyra82207;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_69 . CDS 94639 95255 . - 0 ID=Phyra82207;Parent=Phyra82207;rank=2 scaffold_69 . exon 94639 95255 . - . ID=Phyra82207.2;Parent=Phyra82207;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 95487 95917 . - 0 ID=Phyra82207;Parent=Phyra82207;rank=1 scaffold_69 . exon 95487 95917 . - . ID=Phyra82207.1;Parent=Phyra82207;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 ensembl protein_coding_gene 96356 97675 . - . ID=Phyra82208;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000032;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 96356 97675 . - . ID=Phyra82208;Parent=Phyra82208;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 96356 97675 . - 0 ID=Phyra82208;Parent=Phyra82208;rank=1 scaffold_69 . exon 96356 97675 . - . ID=Phyra82208.1;Parent=Phyra82208;constitutive=1;rank=1 scaffold_69 . biological_region 98125 98129 0.999 - . logic_name=eponine scaffold_69 . biological_region 98808 98809 0.999 + . logic_name=eponine scaffold_69 . biological_region 99729 99729 0.999 - . logic_name=eponine scaffold_69 . biological_region 100112 100116 0.999 - . logic_name=eponine scaffold_69 . biological_region 100471 100475 0.999 - . logic_name=eponine scaffold_69 . repeat_region 102106 102125 . ? . description=trf scaffold_69 . biological_region 102989 102992 0.999 - . logic_name=eponine scaffold_69 . biological_region 103046 103048 0.999 - . logic_name=eponine scaffold_69 . biological_region 103065 103070 0.999 - . logic_name=eponine scaffold_69 . biological_region 103101 103107 0.999 + . logic_name=eponine scaffold_69 . biological_region 103119 103125 0.999 + . logic_name=eponine scaffold_69 . biological_region 103260 103263 0.999 + . logic_name=eponine scaffold_69 . biological_region 103297 103298 0.999 - . logic_name=eponine scaffold_69 . biological_region 103328 103337 0.999 + . logic_name=eponine scaffold_69 . biological_region 103341 103346 0.999 - . logic_name=eponine scaffold_69 . biological_region 103349 103354 0.999 + . logic_name=eponine scaffold_69 . biological_region 103480 103482 0.999 - . logic_name=eponine scaffold_69 . biological_region 103634 103635 0.999 + . logic_name=eponine scaffold_69 ensembl protein_coding_gene 97832 99130 . + . ID=Phyra72001;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_69000003;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 97832 99130 . + . ID=Phyra72001;Parent=Phyra72001;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 97832 97885 . + 0 ID=Phyra72001;Parent=Phyra72001;rank=1 scaffold_69 . exon 97832 97885 . + . ID=Phyra72001.1;Parent=Phyra72001;constitutive=1;rank=1 scaffold_69 . CDS 97913 99130 . + 0 ID=Phyra72001;Parent=Phyra72001;rank=2 scaffold_69 . exon 97913 99130 . + . ID=Phyra72001.2;Parent=Phyra72001;constitutive=1;rank=2 scaffold_69 ensembl protein_coding_gene 100990 101973 . + . ID=Phyra82210;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000034;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 100990 101973 . + . ID=Phyra82210;Parent=Phyra82210;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 100990 101973 . + 0 ID=Phyra82210;Parent=Phyra82210;rank=1 scaffold_69 . exon 100990 101973 . + . ID=Phyra82210.1;Parent=Phyra82210;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 103693 104679 . + . ID=Phyra82211;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000035;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 103693 104679 . + . ID=Phyra82211;Parent=Phyra82211;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 103693 104679 . + 0 ID=Phyra82211;Parent=Phyra82211;rank=1 scaffold_69 . exon 103693 104679 . + . ID=Phyra82211.1;Parent=Phyra82211;constitutive=1;rank=1 scaffold_69 . repeat_region 107457 107473 . ? . description=dust scaffold_69 ensembl protein_coding_gene 106301 107275 . + . ID=Phyra82212;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000036;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 106301 107275 . + . ID=Phyra82212;Parent=Phyra82212;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 106301 107275 . + 0 ID=Phyra82212;Parent=Phyra82212;rank=1 scaffold_69 . exon 106301 107275 . + . ID=Phyra82212.1;Parent=Phyra82212;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 110011 112125 . + . ID=Phyra82213;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000037;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 110011 112125 . + . ID=Phyra82213;Parent=Phyra82213;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 110011 112125 . + 0 ID=Phyra82213;Parent=Phyra82213;rank=1 scaffold_69 . exon 110011 112125 . + . ID=Phyra82213.1;Parent=Phyra82213;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 114490 115464 . - . ID=Phyra82214;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000038;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 114490 115464 . - . ID=Phyra82214;Parent=Phyra82214;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 114490 115464 . - 0 ID=Phyra82214;Parent=Phyra82214;rank=1 scaffold_69 . exon 114490 115464 . - . ID=Phyra82214.1;Parent=Phyra82214;constitutive=1;rank=1 scaffold_69 . biological_region 118130 118132 0.999 - . logic_name=eponine scaffold_69 ensembl protein_coding_gene 117086 118072 . - . ID=Phyra82215;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000039;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 117086 118072 . - . ID=Phyra82215;Parent=Phyra82215;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 117086 118072 . - 0 ID=Phyra82215;Parent=Phyra82215;rank=1 scaffold_69 . exon 117086 118072 . - . ID=Phyra82215.1;Parent=Phyra82215;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 118341 118908 . + . ID=Phyra82216;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000040;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 118341 118908 . + . ID=Phyra82216;Parent=Phyra82216;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 118341 118754 . + 0 ID=Phyra82216;Parent=Phyra82216;rank=1 scaffold_69 . exon 118341 118754 . + . ID=Phyra82216.1;Parent=Phyra82216;constitutive=1;rank=1 scaffold_69 . CDS 118879 118908 . + 0 ID=Phyra82216;Parent=Phyra82216;rank=2 scaffold_69 . exon 118879 118908 . + . ID=Phyra82216.2;Parent=Phyra82216;constitutive=1;rank=2 scaffold_69 ensembl protein_coding_gene 123157 123723 . + . ID=Phyra82217;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000041;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 123157 123723 . + . ID=Phyra82217;Parent=Phyra82217;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 123157 123723 . + 0 ID=Phyra82217;Parent=Phyra82217;rank=1 scaffold_69 . exon 123157 123723 . + . ID=Phyra82217.1;Parent=Phyra82217;constitutive=1;rank=1 scaffold_69 . repeat_region 126314 126363 . ? . description=dust scaffold_69 ensembl protein_coding_gene 131811 132683 . + . ID=Phyra82218;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000042;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 131811 132683 . + . ID=Phyra82218;Parent=Phyra82218;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 131811 132683 . + 0 ID=Phyra82218;Parent=Phyra82218;rank=1 scaffold_69 . exon 131811 132683 . + . ID=Phyra82218.1;Parent=Phyra82218;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 132797 134027 . - . ID=Phyra82219;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000043;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 132797 134027 . - . ID=Phyra82219;Parent=Phyra82219;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 132797 133551 . - 0 ID=Phyra82219;Parent=Phyra82219;rank=2 scaffold_69 . exon 132797 133551 . - . ID=Phyra82219.2;Parent=Phyra82219;constitutive=1;ensembl_phase=1;rank=2 scaffold_69 . CDS 133619 134027 . - 0 ID=Phyra82219;Parent=Phyra82219;rank=1 scaffold_69 . exon 133619 134027 . - . ID=Phyra82219.1;Parent=Phyra82219;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 ensembl protein_coding_gene 134427 136481 . + . ID=Phyra82220;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000044;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 134427 136481 . + . ID=Phyra82220;Parent=Phyra82220;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 134427 136481 . + 0 ID=Phyra82220;Parent=Phyra82220;rank=1 scaffold_69 . exon 134427 136481 . + . ID=Phyra82220.1;Parent=Phyra82220;constitutive=1;rank=1 scaffold_69 . biological_region 137522 137526 0.999 + . logic_name=eponine scaffold_69 . biological_region 143097 143103 0.999 - . logic_name=eponine scaffold_69 . biological_region 143934 143940 0.999 - . logic_name=eponine scaffold_69 . biological_region 144665 144665 0.999 - . logic_name=eponine scaffold_69 ensembl protein_coding_gene 137404 138492 . + . ID=Phyra82221;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000045;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 137404 138492 . + . ID=Phyra82221;Parent=Phyra82221;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 137404 138105 . + 0 ID=Phyra82221;Parent=Phyra82221;rank=1 scaffold_69 . exon 137404 138105 . + . ID=Phyra82221.1;Parent=Phyra82221;constitutive=1;rank=1 scaffold_69 . CDS 138172 138492 . + 0 ID=Phyra82221;Parent=Phyra82221;rank=2 scaffold_69 . exon 138172 138492 . + . ID=Phyra82221.2;Parent=Phyra82221;constitutive=1;rank=2 scaffold_69 ensembl protein_coding_gene 139978 140587 . - . ID=Phyra82222;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000046;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 139978 140587 . - . ID=Phyra82222;Parent=Phyra82222;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 139978 139993 . - 0 ID=Phyra82222;Parent=Phyra82222;rank=2 scaffold_69 . exon 139978 139993 . - . ID=Phyra82222.2;Parent=Phyra82222;constitutive=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 140013 140587 . - 0 ID=Phyra82222;Parent=Phyra82222;rank=1 scaffold_69 . exon 140013 140587 . - . ID=Phyra82222.1;Parent=Phyra82222;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 ensembl protein_coding_gene 140708 141974 . + . ID=Phyra82223;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000047;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 140708 141974 . + . ID=Phyra82223;Parent=Phyra82223;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 140708 141404 . + 0 ID=Phyra82223;Parent=Phyra82223;rank=1 scaffold_69 . exon 140708 141404 . + . ID=Phyra82223.1;Parent=Phyra82223;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 . CDS 141493 141740 . + 0 ID=Phyra82223;Parent=Phyra82223;rank=2 scaffold_69 . exon 141493 141740 . + . ID=Phyra82223.2;Parent=Phyra82223;constitutive=1;ensembl_phase=1;rank=2 scaffold_69 . CDS 141834 141974 . + 0 ID=Phyra82223;Parent=Phyra82223;rank=3 scaffold_69 . exon 141834 141974 . + . ID=Phyra82223.3;Parent=Phyra82223;constitutive=1;rank=3 scaffold_69 ensembl protein_coding_gene 142501 143943 . - . ID=Phyra82224;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000048;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 142501 143943 . - . ID=Phyra82224;Parent=Phyra82224;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 142501 143943 . - 0 ID=Phyra82224;Parent=Phyra82224;rank=1 scaffold_69 . exon 142501 143943 . - . ID=Phyra82224.1;Parent=Phyra82224;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 144545 146494 . - . ID=Phyra82225;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000049;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 144545 146494 . - . ID=Phyra82225;Parent=Phyra82225;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 144545 146494 . - 0 ID=Phyra82225;Parent=Phyra82225;rank=1 scaffold_69 . exon 144545 146494 . - . ID=Phyra82225.1;Parent=Phyra82225;constitutive=1;rank=1 scaffold_69 . repeat_region 150726 150734 . ? . description=dust scaffold_69 ensembl protein_coding_gene 147152 149368 . + . ID=Phyra82226;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000050;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 147152 149368 . + . ID=Phyra82226;Parent=Phyra82226;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 147152 147233 . + 0 ID=Phyra82226;Parent=Phyra82226;rank=1 scaffold_69 . exon 147152 147233 . + . ID=Phyra82226.1;Parent=Phyra82226;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 . CDS 147303 149368 . + 0 ID=Phyra82226;Parent=Phyra82226;rank=2 scaffold_69 . exon 147303 149368 . + . ID=Phyra82226.2;Parent=Phyra82226;constitutive=1;ensembl_phase=1;rank=2 scaffold_69 ensembl protein_coding_gene 151459 152004 . + . ID=Phyra82227;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000051;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 151459 152004 . + . ID=Phyra82227;Parent=Phyra82227;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 151459 152004 . + 0 ID=Phyra82227;Parent=Phyra82227;rank=1 scaffold_69 . exon 151459 152004 . + . ID=Phyra82227.1;Parent=Phyra82227;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 152928 153761 . - . ID=Phyra82228;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000052;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 152928 153761 . - . ID=Phyra82228;Parent=Phyra82228;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 152928 153761 . - 0 ID=Phyra82228;Parent=Phyra82228;rank=1 scaffold_69 . exon 152928 153761 . - . ID=Phyra82228.1;Parent=Phyra82228;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 153986 154600 . + . ID=Phyra82229;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000053;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 153986 154600 . + . ID=Phyra82229;Parent=Phyra82229;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 153986 154600 . + 0 ID=Phyra82229;Parent=Phyra82229;rank=1 scaffold_69 . exon 153986 154600 . + . ID=Phyra82229.1;Parent=Phyra82229;constitutive=1;rank=1 scaffold_69 . biological_region 155754 155757 0.999 - . logic_name=eponine scaffold_69 . biological_region 155760 155762 0.999 + . logic_name=eponine scaffold_69 . biological_region 155803 155809 0.999 - . logic_name=eponine scaffold_69 . biological_region 155846 155852 0.999 - . logic_name=eponine scaffold_69 . biological_region 157580 157582 0.999 - . logic_name=eponine scaffold_69 . biological_region 162464 162464 0.999 + . logic_name=eponine scaffold_69 . biological_region 163111 163114 0.999 + . logic_name=eponine scaffold_69 . biological_region 163354 163357 0.999 - . logic_name=eponine scaffold_69 . biological_region 163444 163445 0.999 + . logic_name=eponine scaffold_69 . biological_region 163477 163481 0.999 + . logic_name=eponine scaffold_69 . biological_region 163602 163602 0.999 - . logic_name=eponine scaffold_69 . repeat_region 163723 163744 . ? . description=trf scaffold_69 ensembl protein_coding_gene 155970 163632 . + . ID=Phyra82230;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000054;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 155970 163632 . + . ID=Phyra82230;Parent=Phyra82230;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 155970 161125 . + 0 ID=Phyra82230;Parent=Phyra82230;rank=1 scaffold_69 . exon 155970 161125 . + . ID=Phyra82230.1;Parent=Phyra82230;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 . CDS 161337 163632 . + 0 ID=Phyra82230;Parent=Phyra82230;rank=2 scaffold_69 . exon 161337 163632 . + . ID=Phyra82230.2;Parent=Phyra82230;constitutive=1;ensembl_phase=2;rank=2 scaffold_69 ensembl protein_coding_gene 164751 166271 . + . ID=Phyra82231;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000055;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 164751 166271 . + . ID=Phyra82231;Parent=Phyra82231;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 164751 166271 . + 0 ID=Phyra82231;Parent=Phyra82231;rank=1 scaffold_69 . exon 164751 166271 . + . ID=Phyra82231.1;Parent=Phyra82231;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 166507 167184 . - . ID=Phyra82232;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000056;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 166507 167184 . - . ID=Phyra82232;Parent=Phyra82232;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 166507 167184 . - 0 ID=Phyra82232;Parent=Phyra82232;rank=1 scaffold_69 . exon 166507 167184 . - . ID=Phyra82232.1;Parent=Phyra82232;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 167340 168236 . + . ID=Phyra82233;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000057;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 167340 168236 . + . ID=Phyra82233;Parent=Phyra82233;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 167340 168236 . + 0 ID=Phyra82233;Parent=Phyra82233;rank=1 scaffold_69 . exon 167340 168236 . + . ID=Phyra82233.1;Parent=Phyra82233;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 168798 169616 . + . ID=Phyra82234;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000058;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 168798 169616 . + . ID=Phyra82234;Parent=Phyra82234;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 168798 168929 . + 0 ID=Phyra82234;Parent=Phyra82234;rank=1 scaffold_69 . exon 168798 168929 . + . ID=Phyra82234.1;Parent=Phyra82234;constitutive=1;rank=1 scaffold_69 . CDS 169320 169616 . + 0 ID=Phyra82234;Parent=Phyra82234;rank=2 scaffold_69 . exon 169320 169616 . + . ID=Phyra82234.2;Parent=Phyra82234;constitutive=1;rank=2 scaffold_69 ensembl protein_coding_gene 170023 171112 . + . ID=Phyra82235;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000059;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 170023 171112 . + . ID=Phyra82235;Parent=Phyra82235;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 170023 170101 . + 0 ID=Phyra82235;Parent=Phyra82235;rank=1 scaffold_69 . exon 170023 170101 . + . ID=Phyra82235.1;Parent=Phyra82235;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 . CDS 170178 170254 . + 0 ID=Phyra82235;Parent=Phyra82235;rank=2 scaffold_69 . exon 170178 170254 . + . ID=Phyra82235.2;Parent=Phyra82235;constitutive=1;ensembl_phase=1;rank=2 scaffold_69 . CDS 170279 171112 . + 0 ID=Phyra82235;Parent=Phyra82235;rank=3 scaffold_69 . exon 170279 171112 . + . ID=Phyra82235.3;Parent=Phyra82235;constitutive=1;rank=3 scaffold_69 ensembl protein_coding_gene 171835 177453 . - . ID=Phyra96266;biotype=protein_coding;external_name=C_scaffold_69000011;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 171835 177453 . - . ID=Phyra96266;Parent=Phyra96266;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 171835 172260 . - 0 ID=Phyra96266;Parent=Phyra96266;rank=17 scaffold_69 . exon 171835 172260 . - . ID=Phyra96266.17;Parent=Phyra96266;constitutive=1;rank=17 scaffold_69 . CDS 172328 172426 . - 0 ID=Phyra96266;Parent=Phyra96266;rank=16 scaffold_69 . exon 172328 172426 . - . ID=Phyra96266.16;Parent=Phyra96266;constitutive=1;rank=16 scaffold_69 . CDS 172499 172633 . - 0 ID=Phyra96266;Parent=Phyra96266;rank=15 scaffold_69 . exon 172499 172633 . - . ID=Phyra96266.15;Parent=Phyra96266;constitutive=1;rank=15 scaffold_69 . CDS 172697 172842 . - 0 ID=Phyra96266;Parent=Phyra96266;rank=14 scaffold_69 . exon 172697 172842 . - . ID=Phyra96266.14;Parent=Phyra96266;constitutive=1;ensembl_phase=1;rank=14 scaffold_69 . CDS 173101 173287 . - 0 ID=Phyra96266;Parent=Phyra96266;rank=13 scaffold_69 . exon 173101 173287 . - . ID=Phyra96266.13;Parent=Phyra96266;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_69 . CDS 173522 173626 . - 0 ID=Phyra96266;Parent=Phyra96266;rank=12 scaffold_69 . exon 173522 173626 . - . ID=Phyra96266.12;Parent=Phyra96266;constitutive=1;rank=12 scaffold_69 . CDS 173700 174067 . - 0 ID=Phyra96266;Parent=Phyra96266;rank=11 scaffold_69 . exon 173700 174067 . - . ID=Phyra96266.11;Parent=Phyra96266;constitutive=1;ensembl_phase=1;rank=11 scaffold_69 . CDS 174131 174388 . - 0 ID=Phyra96266;Parent=Phyra96266;rank=10 scaffold_69 . CDS 174608 174933 . - 0 ID=Phyra96266;Parent=Phyra96266;rank=9 scaffold_69 . CDS 175003 175091 . - 0 ID=Phyra96266;Parent=Phyra96266;rank=8 scaffold_69 . CDS 175177 175360 . - 0 ID=Phyra96266;Parent=Phyra96266;rank=7 scaffold_69 . CDS 175423 175488 . - 0 ID=Phyra96266;Parent=Phyra96266;rank=6 scaffold_69 . CDS 175564 175648 . - 0 ID=Phyra96266;Parent=Phyra96266;rank=5 scaffold_69 . CDS 175717 175804 . - 0 ID=Phyra96266;Parent=Phyra96266;rank=4 scaffold_69 . CDS 175872 175912 . - 0 ID=Phyra96266;Parent=Phyra96266;rank=3 scaffold_69 . CDS 176042 176109 . - 0 ID=Phyra96266;Parent=Phyra96266;rank=2 scaffold_69 . CDS 176621 177453 . - 0 ID=Phyra96266;Parent=Phyra96266;rank=1 scaffold_69 . biological_region 177141 177142 0.999 + . logic_name=eponine scaffold_69 . biological_region 177380 177385 0.999 - . logic_name=eponine scaffold_69 . repeat_region 183500 183614 . ? . description=dust scaffold_69 . repeat_region 183526 183584 . ? . description=trf scaffold_69 . repeat_region 183529 183584 . ? . description=trf scaffold_69 ensembl protein_coding_gene 177988 179472 . + . ID=Phyra82237;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000061;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 177988 179472 . + . ID=Phyra82237;Parent=Phyra82237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 177988 179472 . + 0 ID=Phyra82237;Parent=Phyra82237;rank=1 scaffold_69 . exon 177988 179472 . + . ID=Phyra82237.1;Parent=Phyra82237;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 180356 180922 . + . ID=Phyra82238;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000062;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 180356 180922 . + . ID=Phyra82238;Parent=Phyra82238;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 180356 180922 . + 0 ID=Phyra82238;Parent=Phyra82238;rank=1 scaffold_69 . exon 180356 180922 . + . ID=Phyra82238.1;Parent=Phyra82238;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 181383 182882 . + . ID=Phyra82239;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000063;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 181383 182882 . + . ID=Phyra82239;Parent=Phyra82239;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 181383 182882 . + 0 ID=Phyra82239;Parent=Phyra82239;rank=1 scaffold_69 . exon 181383 182882 . + . ID=Phyra82239.1;Parent=Phyra82239;constitutive=1;rank=1 scaffold_69 . exon 174131 174388 . - . ID=Phyra96266.10;Parent=Phyra96266;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_69 . exon 174608 174933 . - . ID=Phyra96266.9;Parent=Phyra96266;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_69 . exon 175003 175091 . - . ID=Phyra96266.8;Parent=Phyra96266;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_69 . exon 175177 175360 . - . ID=Phyra96266.7;Parent=Phyra96266;constitutive=1;ensembl_phase=2;rank=7 scaffold_69 . exon 175423 175488 . - . ID=Phyra96266.6;Parent=Phyra96266;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_69 . exon 175564 175648 . - . ID=Phyra96266.5;Parent=Phyra96266;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_69 . exon 175717 175804 . - . ID=Phyra96266.4;Parent=Phyra96266;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_69 . exon 175872 175912 . - . ID=Phyra96266.3;Parent=Phyra96266;constitutive=1;ensembl_phase=1;rank=3 scaffold_69 . exon 176042 176109 . - . ID=Phyra96266.2;Parent=Phyra96266;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_69 . exon 176621 177453 . - . ID=Phyra96266.1;Parent=Phyra96266;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 ensembl protein_coding_gene 189706 191184 . + . ID=Phyra72002;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_69000004;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 189706 191184 . + . ID=Phyra72002;Parent=Phyra72002;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 189706 191184 . + 0 ID=Phyra72002;Parent=Phyra72002;rank=1 scaffold_69 . exon 189706 191184 . + . ID=Phyra72002.1;Parent=Phyra72002;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 184198 185820 . - . ID=Phyra82240;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000064;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 184198 185820 . - . ID=Phyra82240;Parent=Phyra82240;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 184198 185820 . - 0 ID=Phyra82240;Parent=Phyra82240;rank=1 scaffold_69 . exon 184198 185820 . - . ID=Phyra82240.1;Parent=Phyra82240;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 187764 189530 . - . ID=Phyra82242;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000066;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 187764 189530 . - . ID=Phyra82242;Parent=Phyra82242;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 187764 189530 . - 0 ID=Phyra82242;Parent=Phyra82242;rank=1 scaffold_69 . exon 187764 189530 . - . ID=Phyra82242.1;Parent=Phyra82242;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 191940 193332 . + . ID=Phyra82244;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000068;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 191940 193332 . + . ID=Phyra82244;Parent=Phyra82244;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 191940 192575 . + 0 ID=Phyra82244;Parent=Phyra82244;rank=1 scaffold_69 . exon 191940 192575 . + . ID=Phyra82244.1;Parent=Phyra82244;constitutive=1;rank=1 scaffold_69 . CDS 193027 193332 . + 0 ID=Phyra82244;Parent=Phyra82244;rank=2 scaffold_69 . exon 193027 193332 . + . ID=Phyra82244.2;Parent=Phyra82244;constitutive=1;rank=2 scaffold_69 ensembl protein_coding_gene 186217 187663 . + . ID=Phyra96267;biotype=protein_coding;external_name=C_scaffold_69000012;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 186217 187663 . + . ID=Phyra96267;Parent=Phyra96267;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 186217 186335 . + 0 ID=Phyra96267;Parent=Phyra96267;rank=1 scaffold_69 . exon 186217 186335 . + . ID=Phyra96267.1;Parent=Phyra96267;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 . CDS 186402 186467 . + 0 ID=Phyra96267;Parent=Phyra96267;rank=2 scaffold_69 . exon 186402 186467 . + . ID=Phyra96267.2;Parent=Phyra96267;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_69 . CDS 186538 186646 . + 0 ID=Phyra96267;Parent=Phyra96267;rank=3 scaffold_69 . exon 186538 186646 . + . ID=Phyra96267.3;Parent=Phyra96267;constitutive=1;ensembl_phase=2;rank=3 scaffold_69 . CDS 186698 187159 . + 0 ID=Phyra96267;Parent=Phyra96267;rank=4 scaffold_69 . exon 186698 187159 . + . ID=Phyra96267.4;Parent=Phyra96267;constitutive=1;rank=4 scaffold_69 . CDS 187187 187342 . + 0 ID=Phyra96267;Parent=Phyra96267;rank=5 scaffold_69 . exon 187187 187342 . + . ID=Phyra96267.5;Parent=Phyra96267;constitutive=1;rank=5 scaffold_69 . CDS 187610 187663 . + 0 ID=Phyra96267;Parent=Phyra96267;rank=6 scaffold_69 . exon 187610 187663 . + . ID=Phyra96267.6;Parent=Phyra96267;constitutive=1;rank=6 scaffold_69 . repeat_region 193216 193313 . ? . description=trf scaffold_69 . repeat_region 193230 193323 . ? . description=dust scaffold_69 . repeat_region 193244 193301 . ? . description=trf scaffold_69 . repeat_region 193501 193509 . ? . description=dust scaffold_69 . biological_region 198461 198467 0.999 + . logic_name=eponine scaffold_69 . biological_region 198510 198514 0.999 - . logic_name=eponine scaffold_69 . biological_region 198543 198545 0.999 - . logic_name=eponine scaffold_69 . biological_region 198551 198554 0.999 - . logic_name=eponine scaffold_69 . biological_region 198576 198578 0.999 - . logic_name=eponine scaffold_69 . biological_region 198724 198729 0.999 + . logic_name=eponine scaffold_69 . repeat_region 199697 199706 . ? . description=dust scaffold_69 ensembl protein_coding_gene 200410 201414 . - . ID=Phyra72003;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_69000005;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 200410 201414 . - . ID=Phyra72003;Parent=Phyra72003;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 200410 201414 . - 0 ID=Phyra72003;Parent=Phyra72003;rank=1 scaffold_69 . exon 200410 201414 . - . ID=Phyra72003.1;Parent=Phyra72003;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 193942 195935 . - . ID=Phyra82245;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000069;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 193942 195935 . - . ID=Phyra82245;Parent=Phyra82245;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 193942 195533 . - 0 ID=Phyra82245;Parent=Phyra82245;rank=3 scaffold_69 . exon 193942 195533 . - . ID=Phyra82245.3;Parent=Phyra82245;constitutive=1;ensembl_phase=1;rank=3 scaffold_69 . CDS 195633 195776 . - 0 ID=Phyra82245;Parent=Phyra82245;rank=2 scaffold_69 . exon 195633 195776 . - . ID=Phyra82245.2;Parent=Phyra82245;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_69 . CDS 195857 195935 . - 0 ID=Phyra82245;Parent=Phyra82245;rank=1 scaffold_69 . exon 195857 195935 . - . ID=Phyra82245.1;Parent=Phyra82245;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 ensembl protein_coding_gene 196208 198277 . - . ID=Phyra82246;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000070;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 196208 198277 . - . ID=Phyra82246;Parent=Phyra82246;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 196208 198277 . - 0 ID=Phyra82246;Parent=Phyra82246;rank=1 scaffold_69 . exon 196208 198277 . - . ID=Phyra82246.1;Parent=Phyra82246;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 198422 200052 . + . ID=Phyra82247;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000071;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 198422 200052 . + . ID=Phyra82247;Parent=Phyra82247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 198422 199498 . + 0 ID=Phyra82247;Parent=Phyra82247;rank=1 scaffold_69 . exon 198422 199498 . + . ID=Phyra82247.1;Parent=Phyra82247;constitutive=1;rank=1 scaffold_69 . CDS 199574 199670 . + 0 ID=Phyra82247;Parent=Phyra82247;rank=2 scaffold_69 . exon 199574 199670 . + . ID=Phyra82247.2;Parent=Phyra82247;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_69 . CDS 199762 199913 . + 0 ID=Phyra82247;Parent=Phyra82247;rank=3 scaffold_69 . exon 199762 199913 . + . ID=Phyra82247.3;Parent=Phyra82247;constitutive=1;ensembl_phase=1;rank=3 scaffold_69 . CDS 199984 200052 . + 0 ID=Phyra82247;Parent=Phyra82247;rank=4 scaffold_69 . exon 199984 200052 . + . ID=Phyra82247.4;Parent=Phyra82247;constitutive=1;rank=4 scaffold_69 ensembl protein_coding_gene 201950 204298 . + . ID=Phyra96274;biotype=protein_coding;external_name=C_scaffold_69000019;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 201950 204298 . + . ID=Phyra96274;Parent=Phyra96274;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 201950 202653 . + 0 ID=Phyra96274;Parent=Phyra96274;rank=1 scaffold_69 . exon 201950 202653 . + . ID=Phyra96274.1;Parent=Phyra96274;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 . CDS 202873 202967 . + 0 ID=Phyra96274;Parent=Phyra96274;rank=2 scaffold_69 . exon 202873 202967 . + . ID=Phyra96274.2;Parent=Phyra96274;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 203099 203450 . + 0 ID=Phyra96274;Parent=Phyra96274;rank=3 scaffold_69 . CDS 204003 204231 . + 0 ID=Phyra96274;Parent=Phyra96274;rank=4 scaffold_69 . CDS 204269 204298 . + 0 ID=Phyra96274;Parent=Phyra96274;rank=5 scaffold_69 ensembl protein_coding_gene 205943 209417 . + . ID=Phyra82250;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000074;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 205943 209417 . + . ID=Phyra82250;Parent=Phyra82250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 205943 207816 . + 0 ID=Phyra82250;Parent=Phyra82250;rank=1 scaffold_69 . exon 205943 207816 . + . ID=Phyra82250.1;Parent=Phyra82250;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 . CDS 208079 208678 . + 0 ID=Phyra82250;Parent=Phyra82250;rank=2 scaffold_69 . exon 208079 208678 . + . ID=Phyra82250.2;Parent=Phyra82250;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_69 . CDS 208745 209417 . + 0 ID=Phyra82250;Parent=Phyra82250;rank=3 scaffold_69 . exon 208745 209417 . + . ID=Phyra82250.3;Parent=Phyra82250;constitutive=1;ensembl_phase=2;rank=3 scaffold_69 ensembl protein_coding_gene 209877 210547 . - . ID=Phyra82251;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000075;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 209877 210547 . - . ID=Phyra82251;Parent=Phyra82251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 209877 210101 . - 0 ID=Phyra82251;Parent=Phyra82251;rank=3 scaffold_69 . exon 209877 210101 . - . ID=Phyra82251.3;Parent=Phyra82251;constitutive=1;rank=3 scaffold_69 . CDS 210175 210506 . - 0 ID=Phyra82251;Parent=Phyra82251;rank=2 scaffold_69 . exon 210175 210506 . - . ID=Phyra82251.2;Parent=Phyra82251;constitutive=1;ensembl_phase=1;rank=2 scaffold_69 . CDS 210541 210547 . - 0 ID=Phyra82251;Parent=Phyra82251;rank=1 scaffold_69 . exon 210541 210547 . - . ID=Phyra82251.1;Parent=Phyra82251;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 ensembl protein_coding_gene 210727 211929 . + . ID=Phyra82252;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000076;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 210727 211929 . + . ID=Phyra82252;Parent=Phyra82252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 210727 211929 . + 0 ID=Phyra82252;Parent=Phyra82252;rank=1 scaffold_69 . exon 210727 211929 . + . ID=Phyra82252.1;Parent=Phyra82252;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 212162 214098 . - . ID=Phyra82253;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000077;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 212162 214098 . - . ID=Phyra82253;Parent=Phyra82253;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 212162 212184 . - 0 ID=Phyra82253;Parent=Phyra82253;rank=2 scaffold_69 . exon 212162 212184 . - . ID=Phyra82253.2;Parent=Phyra82253;constitutive=1;ensembl_phase=1;rank=2 scaffold_69 . CDS 212250 214098 . - 0 ID=Phyra82253;Parent=Phyra82253;rank=1 scaffold_69 . exon 212250 214098 . - . ID=Phyra82253.1;Parent=Phyra82253;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 . exon 203099 203450 . + . ID=Phyra96274.3;Parent=Phyra96274;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_69 . exon 204003 204231 . + . ID=Phyra96274.4;Parent=Phyra96274;constitutive=1;ensembl_phase=2;rank=4 scaffold_69 . exon 204269 204298 . + . ID=Phyra96274.5;Parent=Phyra96274;constitutive=1;rank=5 scaffold_69 . biological_region 219000 219001 0.999 - . logic_name=eponine scaffold_69 . biological_region 221453 221454 0.999 + . logic_name=eponine scaffold_69 ensembl protein_coding_gene 214305 214733 . + . ID=Phyra82254;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000078;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 214305 214733 . + . ID=Phyra82254;Parent=Phyra82254;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 214305 214733 . + 0 ID=Phyra82254;Parent=Phyra82254;rank=1 scaffold_69 . exon 214305 214733 . + . ID=Phyra82254.1;Parent=Phyra82254;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 214833 215919 . - . ID=Phyra82255;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000079;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 214833 215919 . - . ID=Phyra82255;Parent=Phyra82255;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 214833 215504 . - 0 ID=Phyra82255;Parent=Phyra82255;rank=3 scaffold_69 . exon 214833 215504 . - . ID=Phyra82255.3;Parent=Phyra82255;constitutive=1;rank=3 scaffold_69 . CDS 215573 215838 . - 0 ID=Phyra82255;Parent=Phyra82255;rank=2 scaffold_69 . exon 215573 215838 . - . ID=Phyra82255.2;Parent=Phyra82255;constitutive=1;ensembl_phase=1;rank=2 scaffold_69 . CDS 215916 215919 . - 0 ID=Phyra82255;Parent=Phyra82255;rank=1 scaffold_69 . exon 215916 215919 . - . ID=Phyra82255.1;Parent=Phyra82255;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 ensembl protein_coding_gene 220403 221082 . - . ID=Phyra82256;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000080;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 220403 221082 . - . ID=Phyra82256;Parent=Phyra82256;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 220403 220834 . - 0 ID=Phyra82256;Parent=Phyra82256;rank=2 scaffold_69 . exon 220403 220834 . - . ID=Phyra82256.2;Parent=Phyra82256;constitutive=1;rank=2 scaffold_69 . CDS 220906 221082 . - 0 ID=Phyra82256;Parent=Phyra82256;rank=1 scaffold_69 . exon 220906 221082 . - . ID=Phyra82256.1;Parent=Phyra82256;constitutive=1;rank=1 scaffold_69 . repeat_region 223647 223667 . ? . description=trf scaffold_69 . repeat_region 223659 223738 . ? . description=trf scaffold_69 ensembl protein_coding_gene 223935 226598 . + . ID=Phyra82257;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000081;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 223935 226598 . + . ID=Phyra82257;Parent=Phyra82257;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 223935 226598 . + 0 ID=Phyra82257;Parent=Phyra82257;rank=1 scaffold_69 . exon 223935 226598 . + . ID=Phyra82257.1;Parent=Phyra82257;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 226690 229068 . - . ID=Phyra82258;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000082;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 226690 229068 . - . ID=Phyra82258;Parent=Phyra82258;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 226690 229068 . - 0 ID=Phyra82258;Parent=Phyra82258;rank=1 scaffold_69 . exon 226690 229068 . - . ID=Phyra82258.1;Parent=Phyra82258;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 230189 231106 . - . ID=Phyra82259;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000083;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 230189 231106 . - . ID=Phyra82259;Parent=Phyra82259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 230189 231106 . - 0 ID=Phyra82259;Parent=Phyra82259;rank=1 scaffold_69 . exon 230189 231106 . - . ID=Phyra82259.1;Parent=Phyra82259;constitutive=1;rank=1 scaffold_69 . repeat_region 233249 233256 . ? . description=dust scaffold_69 . repeat_region 233369 233395 . ? . description=dust scaffold_69 . biological_region 236043 236046 0.999 + . logic_name=eponine scaffold_69 ensembl protein_coding_gene 233679 236258 . + . ID=Phyra82260;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000084;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 233679 236258 . + . ID=Phyra82260;Parent=Phyra82260;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 233679 236258 . + 0 ID=Phyra82260;Parent=Phyra82260;rank=1 scaffold_69 . exon 233679 236258 . + . ID=Phyra82260.1;Parent=Phyra82260;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 238326 239981 . + . ID=Phyra82261;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000085;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 238326 239981 . + . ID=Phyra82261;Parent=Phyra82261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 238326 239981 . + 0 ID=Phyra82261;Parent=Phyra82261;rank=1 scaffold_69 . exon 238326 239981 . + . ID=Phyra82261.1;Parent=Phyra82261;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 240164 241803 . - . ID=Phyra82262;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000086;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 240164 241803 . - . ID=Phyra82262;Parent=Phyra82262;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 240164 240372 . - 0 ID=Phyra82262;Parent=Phyra82262;rank=5 scaffold_69 . exon 240164 240372 . - . ID=Phyra82262.5;Parent=Phyra82262;constitutive=1;ensembl_phase=1;rank=5 scaffold_69 . CDS 240447 241112 . - 0 ID=Phyra82262;Parent=Phyra82262;rank=4 scaffold_69 . exon 240447 241112 . - . ID=Phyra82262.4;Parent=Phyra82262;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_69 . CDS 241179 241380 . - 0 ID=Phyra82262;Parent=Phyra82262;rank=3 scaffold_69 . exon 241179 241380 . - . ID=Phyra82262.3;Parent=Phyra82262;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_69 . CDS 241451 241541 . - 0 ID=Phyra82262;Parent=Phyra82262;rank=2 scaffold_69 . exon 241451 241541 . - . ID=Phyra82262.2;Parent=Phyra82262;constitutive=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 241607 241803 . - 0 ID=Phyra82262;Parent=Phyra82262;rank=1 scaffold_69 . repeat_region 243813 243854 . ? . description=trf scaffold_69 . repeat_region 243825 243864 . ? . description=trf scaffold_69 . exon 241607 241803 . - . ID=Phyra82262.1;Parent=Phyra82262;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 ensembl protein_coding_gene 244594 245544 . - . ID=Phyra82264;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000088;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 244594 245544 . - . ID=Phyra82264;Parent=Phyra82264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 244594 245204 . - 0 ID=Phyra82264;Parent=Phyra82264;rank=3 scaffold_69 . exon 244594 245204 . - . ID=Phyra82264.3;Parent=Phyra82264;constitutive=1;ensembl_phase=1;rank=3 scaffold_69 . CDS 245280 245358 . - 0 ID=Phyra82264;Parent=Phyra82264;rank=2 scaffold_69 . exon 245280 245358 . - . ID=Phyra82264.2;Parent=Phyra82264;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_69 . CDS 245440 245544 . - 0 ID=Phyra82264;Parent=Phyra82264;rank=1 scaffold_69 . exon 245440 245544 . - . ID=Phyra82264.1;Parent=Phyra82264;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 245692 246585 . - . ID=Phyra82265;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000089;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 245692 246585 . - . ID=Phyra82265;Parent=Phyra82265;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 245692 246585 . - 0 ID=Phyra82265;Parent=Phyra82265;rank=1 scaffold_69 . exon 245692 246585 . - . ID=Phyra82265.1;Parent=Phyra82265;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 247502 250451 . - . ID=Phyra82266;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000090;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 247502 250451 . - . ID=Phyra82266;Parent=Phyra82266;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 247502 247513 . - 0 ID=Phyra82266;Parent=Phyra82266;rank=3 scaffold_69 . exon 247502 247513 . - . ID=Phyra82266.3;Parent=Phyra82266;constitutive=1;rank=3 scaffold_69 . CDS 247604 248921 . - 0 ID=Phyra82266;Parent=Phyra82266;rank=2 scaffold_69 . exon 247604 248921 . - . ID=Phyra82266.2;Parent=Phyra82266;constitutive=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 249550 250451 . - 0 ID=Phyra82266;Parent=Phyra82266;rank=1 scaffold_69 . exon 249550 250451 . - . ID=Phyra82266.1;Parent=Phyra82266;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 ensembl protein_coding_gene 241975 243975 . + . ID=Phyra96276;biotype=protein_coding;external_name=C_scaffold_69000021;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 241975 243975 . + . ID=Phyra96276;Parent=Phyra96276;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 241975 241993 . + 0 ID=Phyra96276;Parent=Phyra96276;rank=1 scaffold_69 . exon 241975 241993 . + . ID=Phyra96276.1;Parent=Phyra96276;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 . CDS 242259 242385 . + 0 ID=Phyra96276;Parent=Phyra96276;rank=2 scaffold_69 . exon 242259 242385 . + . ID=Phyra96276.2;Parent=Phyra96276;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_69 . CDS 242513 243925 . + 0 ID=Phyra96276;Parent=Phyra96276;rank=3 scaffold_69 . exon 242513 243925 . + . ID=Phyra96276.3;Parent=Phyra96276;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_69 . CDS 243957 243975 . + 0 ID=Phyra96276;Parent=Phyra96276;rank=4 scaffold_69 . exon 243957 243975 . + . ID=Phyra96276.4;Parent=Phyra96276;constitutive=1;ensembl_phase=2;rank=4 scaffold_69 . biological_region 252464 252466 0.999 + . logic_name=eponine scaffold_69 . repeat_region 256259 256270 . ? . description=dust scaffold_69 ensembl protein_coding_gene 252344 253702 . + . ID=Phyra72004;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_69000006;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 252344 253702 . + . ID=Phyra72004;Parent=Phyra72004;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 252344 253702 . + 0 ID=Phyra72004;Parent=Phyra72004;rank=1 scaffold_69 . exon 252344 253702 . + . ID=Phyra72004.1;Parent=Phyra72004;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 254225 255580 . - . ID=Phyra82268;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000092;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 254225 255580 . - . ID=Phyra82268;Parent=Phyra82268;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 254225 255580 . - 0 ID=Phyra82268;Parent=Phyra82268;rank=1 scaffold_69 . exon 254225 255580 . - . ID=Phyra82268.1;Parent=Phyra82268;constitutive=1;rank=1 scaffold_69 . repeat_region 265430 265456 . ? . description=trf scaffold_69 . repeat_region 267740 267767 . ? . description=trf scaffold_69 ensembl protein_coding_gene 262383 263096 . + . ID=Phyra82269;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000093;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 262383 263096 . + . ID=Phyra82269;Parent=Phyra82269;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 262383 262701 . + 0 ID=Phyra82269;Parent=Phyra82269;rank=1 scaffold_69 . exon 262383 262701 . + . ID=Phyra82269.1;Parent=Phyra82269;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 . CDS 263056 263096 . + 0 ID=Phyra82269;Parent=Phyra82269;rank=2 scaffold_69 . exon 263056 263096 . + . ID=Phyra82269.2;Parent=Phyra82269;constitutive=1;ensembl_phase=1;rank=2 scaffold_69 ensembl protein_coding_gene 264588 264950 . + . ID=Phyra82270;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000094;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 264588 264950 . + . ID=Phyra82270;Parent=Phyra82270;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 264588 264950 . + 0 ID=Phyra82270;Parent=Phyra82270;rank=1 scaffold_69 . exon 264588 264950 . + . ID=Phyra82270.1;Parent=Phyra82270;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 265479 265856 . - . ID=Phyra82271;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000095;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 265479 265856 . - . ID=Phyra82271;Parent=Phyra82271;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 265479 265856 . - 0 ID=Phyra82271;Parent=Phyra82271;rank=1 scaffold_69 . exon 265479 265856 . - . ID=Phyra82271.1;Parent=Phyra82271;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 268831 270110 . + . ID=Phyra82272;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_69000096;logic_name=jgi_phyra1 scaffold_69 ensembl transcript 268831 270110 . + . ID=Phyra82272;Parent=Phyra82272;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_69 . CDS 268831 269561 . + 0 ID=Phyra82272;Parent=Phyra82272;rank=1 scaffold_69 . exon 268831 269561 . + . ID=Phyra82272.1;Parent=Phyra82272;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 . CDS 269745 269808 . + 0 ID=Phyra82272;Parent=Phyra82272;rank=2 scaffold_69 . exon 269745 269808 . + . ID=Phyra82272.2;Parent=Phyra82272;constitutive=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 270099 270110 . + 0 ID=Phyra82272;Parent=Phyra82272;rank=3 scaffold_69 . exon 270099 270110 . + . ID=Phyra82272.3;Parent=Phyra82272;constitutive=1;rank=3 scaffold_69 . repeat_region 270763 278292 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_67 1 286994 scaffold_67 . repeat_region 4001 4058 . ? . description=trf scaffold_67 . repeat_region 4531 4651 . ? . description=dust scaffold_67 . repeat_region 5399 8929 . ? . description=dust scaffold_67 . repeat_region 8979 8994 . ? . description=dust scaffold_67 . biological_region 9643 9644 0.999 + . logic_name=eponine scaffold_67 ensembl protein_coding_gene 173 710 . + . ID=Phyra52267;biotype=protein_coding;external_name=gwEuk.67.22.1;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 173 710 . + . ID=Phyra52267;Parent=Phyra52267;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 173 257 . + 0 ID=Phyra52267;Parent=Phyra52267;rank=1 scaffold_67 . exon 173 257 . + . ID=Phyra52267.1;Parent=Phyra52267;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . CDS 327 449 . + 0 ID=Phyra52267;Parent=Phyra52267;rank=2 scaffold_67 . exon 327 449 . + . ID=Phyra52267.2;Parent=Phyra52267;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_67 . CDS 517 710 . + 0 ID=Phyra52267;Parent=Phyra52267;rank=3 scaffold_67 . exon 517 710 . + . ID=Phyra52267.3;Parent=Phyra52267;constitutive=1;ensembl_phase=1;rank=3 scaffold_67 ensembl protein_coding_gene 811 3611 . - . ID=Phyra82027;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000002;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 811 3611 . - . ID=Phyra82027;Parent=Phyra82027;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 811 1251 . - 0 ID=Phyra82027;Parent=Phyra82027;rank=8 scaffold_67 . exon 811 1251 . - . ID=Phyra82027.8;Parent=Phyra82027;constitutive=1;rank=8 scaffold_67 . CDS 1325 1384 . - 0 ID=Phyra82027;Parent=Phyra82027;rank=7 scaffold_67 . exon 1325 1384 . - . ID=Phyra82027.7;Parent=Phyra82027;constitutive=1;rank=7 scaffold_67 . CDS 1439 1573 . - 0 ID=Phyra82027;Parent=Phyra82027;rank=6 scaffold_67 . exon 1439 1573 . - . ID=Phyra82027.6;Parent=Phyra82027;constitutive=1;rank=6 scaffold_67 . CDS 1645 1821 . - 0 ID=Phyra82027;Parent=Phyra82027;rank=5 scaffold_67 . exon 1645 1821 . - . ID=Phyra82027.5;Parent=Phyra82027;constitutive=1;rank=5 scaffold_67 . CDS 1893 2859 . - 0 ID=Phyra82027;Parent=Phyra82027;rank=4 scaffold_67 . exon 1893 2859 . - . ID=Phyra82027.4;Parent=Phyra82027;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 . CDS 2927 2970 . - 0 ID=Phyra82027;Parent=Phyra82027;rank=3 scaffold_67 . exon 2927 2970 . - . ID=Phyra82027.3;Parent=Phyra82027;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_67 . CDS 3045 3440 . - 0 ID=Phyra82027;Parent=Phyra82027;rank=2 scaffold_67 . exon 3045 3440 . - . ID=Phyra82027.2;Parent=Phyra82027;constitutive=1;rank=2 scaffold_67 . CDS 3513 3611 . - 0 ID=Phyra82027;Parent=Phyra82027;rank=1 scaffold_67 . exon 3513 3611 . - . ID=Phyra82027.1;Parent=Phyra82027;constitutive=1;rank=1 scaffold_67 . repeat_region 16491 16796 . + . description=GypsyPi-1c_LTR scaffold_67 . biological_region 20319 20322 0.999 + . logic_name=eponine scaffold_67 . biological_region 20360 20365 0.999 - . logic_name=eponine scaffold_67 . biological_region 20417 20417 0.999 + . logic_name=eponine scaffold_67 . biological_region 20454 20458 0.999 - . logic_name=eponine scaffold_67 . repeat_region 23730 23738 . ? . description=dust scaffold_67 . biological_region 26589 26589 0.999 + . logic_name=eponine scaffold_67 . repeat_region 28419 28468 . ? . description=dust scaffold_67 ensembl protein_coding_gene 24373 25431 . - . ID=Phyra82028;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000003;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 24373 25431 . - . ID=Phyra82028;Parent=Phyra82028;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 24373 24759 . - 0 ID=Phyra82028;Parent=Phyra82028;rank=4 scaffold_67 . exon 24373 24759 . - . ID=Phyra82028.4;Parent=Phyra82028;constitutive=1;rank=4 scaffold_67 . CDS 24802 24892 . - 0 ID=Phyra82028;Parent=Phyra82028;rank=3 scaffold_67 . exon 24802 24892 . - . ID=Phyra82028.3;Parent=Phyra82028;constitutive=1;ensembl_phase=2;rank=3 scaffold_67 . CDS 24967 25195 . - 0 ID=Phyra82028;Parent=Phyra82028;rank=2 scaffold_67 . exon 24967 25195 . - . ID=Phyra82028.2;Parent=Phyra82028;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_67 . CDS 25227 25431 . - 0 ID=Phyra82028;Parent=Phyra82028;rank=1 scaffold_67 . exon 25227 25431 . - . ID=Phyra82028.1;Parent=Phyra82028;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 ensembl protein_coding_gene 27366 29784 . - . ID=Phyra82029;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000004;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 27366 29784 . - . ID=Phyra82029;Parent=Phyra82029;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 27366 27413 . - 0 ID=Phyra82029;Parent=Phyra82029;rank=5 scaffold_67 . exon 27366 27413 . - . ID=Phyra82029.5;Parent=Phyra82029;constitutive=1;rank=5 scaffold_67 . CDS 27435 27550 . - 0 ID=Phyra82029;Parent=Phyra82029;rank=4 scaffold_67 . exon 27435 27550 . - . ID=Phyra82029.4;Parent=Phyra82029;constitutive=1;ensembl_phase=1;rank=4 scaffold_67 . CDS 27571 27896 . - 0 ID=Phyra82029;Parent=Phyra82029;rank=3 scaffold_67 . exon 27571 27896 . - . ID=Phyra82029.3;Parent=Phyra82029;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_67 . CDS 28489 29216 . - 0 ID=Phyra82029;Parent=Phyra82029;rank=2 scaffold_67 . exon 28489 29216 . - . ID=Phyra82029.2;Parent=Phyra82029;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_67 . CDS 29317 29784 . - 0 ID=Phyra82029;Parent=Phyra82029;rank=1 scaffold_67 . exon 29317 29784 . - . ID=Phyra82029.1;Parent=Phyra82029;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 36735 38140 . + . ID=Phyra52278;biotype=protein_coding;external_name=gwEuk.67.33.1;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 36735 38140 . + . ID=Phyra52278;Parent=Phyra52278;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 36735 36784 . + 0 ID=Phyra52278;Parent=Phyra52278;rank=1 scaffold_67 . exon 36735 36784 . + . ID=Phyra52278.1;Parent=Phyra52278;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . CDS 36864 36945 . + 0 ID=Phyra52278;Parent=Phyra52278;rank=2 scaffold_67 . exon 36864 36945 . + . ID=Phyra52278.2;Parent=Phyra52278;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 37002 37283 . + 0 ID=Phyra52278;Parent=Phyra52278;rank=3 scaffold_67 . exon 37002 37283 . + . ID=Phyra52278.3;Parent=Phyra52278;constitutive=1;rank=3 scaffold_67 . CDS 37329 37438 . + 0 ID=Phyra52278;Parent=Phyra52278;rank=4 scaffold_67 . exon 37329 37438 . + . ID=Phyra52278.4;Parent=Phyra52278;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_67 . CDS 37514 37937 . + 0 ID=Phyra52278;Parent=Phyra52278;rank=5 scaffold_67 . exon 37514 37937 . + . ID=Phyra52278.5;Parent=Phyra52278;constitutive=1;ensembl_phase=2;rank=5 scaffold_67 . CDS 38012 38140 . + 0 ID=Phyra52278;Parent=Phyra52278;rank=6 scaffold_67 . exon 38012 38140 . + . ID=Phyra52278.6;Parent=Phyra52278;constitutive=1;rank=6 scaffold_67 ensembl protein_coding_gene 30432 31454 . + . ID=Phyra82030;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000005;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 30432 31454 . + . ID=Phyra82030;Parent=Phyra82030;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 30432 31454 . + 0 ID=Phyra82030;Parent=Phyra82030;rank=1 scaffold_67 . exon 30432 31454 . + . ID=Phyra82030.1;Parent=Phyra82030;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 31636 32094 . - . ID=Phyra82031;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000006;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 31636 32094 . - . ID=Phyra82031;Parent=Phyra82031;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 31636 32094 . - 0 ID=Phyra82031;Parent=Phyra82031;rank=1 scaffold_67 . exon 31636 32094 . - . ID=Phyra82031.1;Parent=Phyra82031;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 33061 34083 . + . ID=Phyra82032;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000007;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 33061 34083 . + . ID=Phyra82032;Parent=Phyra82032;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 33061 34083 . + 0 ID=Phyra82032;Parent=Phyra82032;rank=1 scaffold_67 . exon 33061 34083 . + . ID=Phyra82032.1;Parent=Phyra82032;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 34265 36577 . - . ID=Phyra82033;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000008;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 34265 36577 . - . ID=Phyra82033;Parent=Phyra82033;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 34265 35381 . - 0 ID=Phyra82033;Parent=Phyra82033;rank=2 scaffold_67 . exon 34265 35381 . - . ID=Phyra82033.2;Parent=Phyra82033;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 35451 36577 . - 0 ID=Phyra82033;Parent=Phyra82033;rank=1 scaffold_67 . exon 35451 36577 . - . ID=Phyra82033.1;Parent=Phyra82033;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 ensembl protein_coding_gene 38195 40172 . - . ID=Phyra82035;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000010;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 38195 40172 . - . ID=Phyra82035;Parent=Phyra82035;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 38195 39303 . - 0 ID=Phyra82035;Parent=Phyra82035;rank=3 scaffold_67 . exon 38195 39303 . - . ID=Phyra82035.3;Parent=Phyra82035;constitutive=1;ensembl_phase=1;rank=3 scaffold_67 . CDS 39371 39569 . - 0 ID=Phyra82035;Parent=Phyra82035;rank=2 scaffold_67 . exon 39371 39569 . - . ID=Phyra82035.2;Parent=Phyra82035;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_67 . CDS 39633 40172 . - 0 ID=Phyra82035;Parent=Phyra82035;rank=1 scaffold_67 . biological_region 39874 39876 0.999 - . logic_name=eponine scaffold_67 . biological_region 39927 39932 0.999 + . logic_name=eponine scaffold_67 . biological_region 39955 39960 0.999 + . logic_name=eponine scaffold_67 . biological_region 40026 40026 0.999 + . logic_name=eponine scaffold_67 . biological_region 40423 40425 0.999 + . logic_name=eponine scaffold_67 . repeat_region 44631 44638 . ? . description=dust scaffold_67 . biological_region 44973 44976 0.999 - . logic_name=eponine scaffold_67 . biological_region 45543 45545 0.999 - . logic_name=eponine scaffold_67 . biological_region 48244 48246 0.999 + . logic_name=eponine scaffold_67 . biological_region 48447 48451 0.999 + . logic_name=eponine scaffold_67 . biological_region 48729 48730 0.999 - . logic_name=eponine scaffold_67 . biological_region 48755 48759 0.999 - . logic_name=eponine scaffold_67 . biological_region 49247 49251 0.999 - . logic_name=eponine scaffold_67 . biological_region 49280 49285 0.999 - . logic_name=eponine scaffold_67 . exon 39633 40172 . - . ID=Phyra82035.1;Parent=Phyra82035;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 40324 43532 . + . ID=Phyra82036;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000011;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 40324 43532 . + . ID=Phyra82036;Parent=Phyra82036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 40324 41465 . + 0 ID=Phyra82036;Parent=Phyra82036;rank=1 scaffold_67 . exon 40324 41465 . + . ID=Phyra82036.1;Parent=Phyra82036;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . CDS 41536 41597 . + 0 ID=Phyra82036;Parent=Phyra82036;rank=2 scaffold_67 . exon 41536 41597 . + . ID=Phyra82036.2;Parent=Phyra82036;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 41789 41868 . + 0 ID=Phyra82036;Parent=Phyra82036;rank=3 scaffold_67 . exon 41789 41868 . + . ID=Phyra82036.3;Parent=Phyra82036;constitutive=1;ensembl_phase=1;rank=3 scaffold_67 . CDS 42067 43277 . + 0 ID=Phyra82036;Parent=Phyra82036;rank=4 scaffold_67 . exon 42067 43277 . + . ID=Phyra82036.4;Parent=Phyra82036;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_67 . CDS 43355 43532 . + 0 ID=Phyra82036;Parent=Phyra82036;rank=5 scaffold_67 . exon 43355 43532 . + . ID=Phyra82036.5;Parent=Phyra82036;constitutive=1;ensembl_phase=2;rank=5 scaffold_67 ensembl protein_coding_gene 44792 49363 . + . ID=Phyra82037;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000012;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 44792 49363 . + . ID=Phyra82037;Parent=Phyra82037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 44792 45954 . + 0 ID=Phyra82037;Parent=Phyra82037;rank=1 scaffold_67 . exon 44792 45954 . + . ID=Phyra82037.1;Parent=Phyra82037;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . CDS 46007 46153 . + 0 ID=Phyra82037;Parent=Phyra82037;rank=2 scaffold_67 . exon 46007 46153 . + . ID=Phyra82037.2;Parent=Phyra82037;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_67 . CDS 46284 46362 . + 0 ID=Phyra82037;Parent=Phyra82037;rank=3 scaffold_67 . exon 46284 46362 . + . ID=Phyra82037.3;Parent=Phyra82037;constitutive=1;ensembl_phase=2;rank=3 scaffold_67 . CDS 46388 47520 . + 0 ID=Phyra82037;Parent=Phyra82037;rank=4 scaffold_67 . exon 46388 47520 . + . ID=Phyra82037.4;Parent=Phyra82037;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_67 . CDS 47587 47733 . + 0 ID=Phyra82037;Parent=Phyra82037;rank=5 scaffold_67 . exon 47587 47733 . + . ID=Phyra82037.5;Parent=Phyra82037;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_67 . CDS 47954 48004 . + 0 ID=Phyra82037;Parent=Phyra82037;rank=6 scaffold_67 . exon 47954 48004 . + . ID=Phyra82037.6;Parent=Phyra82037;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_67 . CDS 48186 48312 . + 0 ID=Phyra82037;Parent=Phyra82037;rank=7 scaffold_67 . exon 48186 48312 . + . ID=Phyra82037.7;Parent=Phyra82037;constitutive=1;ensembl_phase=2;rank=7 scaffold_67 . CDS 48371 49363 . + 0 ID=Phyra82037;Parent=Phyra82037;rank=8 scaffold_67 . exon 48371 49363 . + . ID=Phyra82037.8;Parent=Phyra82037;constitutive=1;rank=8 scaffold_67 . repeat_region 50292 50339 . ? . description=trf scaffold_67 . repeat_region 50295 50351 . ? . description=trf scaffold_67 . repeat_region 50971 51044 . ? . description=trf scaffold_67 . repeat_region 50997 51032 . ? . description=trf scaffold_67 . repeat_region 51515 51622 . ? . description=trf scaffold_67 . repeat_region 51969 52042 . ? . description=trf scaffold_67 . repeat_region 51995 52030 . ? . description=trf scaffold_67 . repeat_region 52513 52647 . ? . description=trf scaffold_67 . repeat_region 55034 55053 . ? . description=trf scaffold_67 ensembl protein_coding_gene 55681 55914 . - . ID=Phyra52280;biotype=protein_coding;external_name=gwEuk.67.35.1;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 55681 55914 . - . ID=Phyra52280;Parent=Phyra52280;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 55681 55914 . - 0 ID=Phyra52280;Parent=Phyra52280;rank=1 scaffold_67 . exon 55681 55914 . - . ID=Phyra52280.1;Parent=Phyra52280;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 50034 50360 . + . ID=Phyra82038;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000013;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 50034 50360 . + . ID=Phyra82038;Parent=Phyra82038;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 50034 50360 . + 0 ID=Phyra82038;Parent=Phyra82038;rank=1 scaffold_67 . exon 50034 50360 . + . ID=Phyra82038.1;Parent=Phyra82038;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 54348 55365 . + . ID=Phyra82039;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000014;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 54348 55365 . + . ID=Phyra82039;Parent=Phyra82039;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 54348 54385 . + 0 ID=Phyra82039;Parent=Phyra82039;rank=1 scaffold_67 . exon 54348 54385 . + . ID=Phyra82039.1;Parent=Phyra82039;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . CDS 54471 54531 . + 0 ID=Phyra82039;Parent=Phyra82039;rank=2 scaffold_67 . exon 54471 54531 . + . ID=Phyra82039.2;Parent=Phyra82039;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 54625 54671 . + 0 ID=Phyra82039;Parent=Phyra82039;rank=3 scaffold_67 . exon 54625 54671 . + . ID=Phyra82039.3;Parent=Phyra82039;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_67 . CDS 54741 55365 . + 0 ID=Phyra82039;Parent=Phyra82039;rank=4 scaffold_67 . exon 54741 55365 . + . ID=Phyra82039.4;Parent=Phyra82039;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 ensembl protein_coding_gene 56451 59691 . + . ID=Phyra82040;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000015;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 56451 59691 . + . ID=Phyra82040;Parent=Phyra82040;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 56451 56819 . + 0 ID=Phyra82040;Parent=Phyra82040;rank=1 scaffold_67 . exon 56451 56819 . + . ID=Phyra82040.1;Parent=Phyra82040;constitutive=1;rank=1 scaffold_67 . CDS 56896 59691 . + 0 ID=Phyra82040;Parent=Phyra82040;rank=2 scaffold_67 . exon 56896 59691 . + . ID=Phyra82040.2;Parent=Phyra82040;constitutive=1;rank=2 scaffold_67 . biological_region 62863 62868 0.999 + . logic_name=eponine scaffold_67 . biological_region 62903 62908 0.999 + . logic_name=eponine scaffold_67 . biological_region 62926 62933 0.999 + . logic_name=eponine scaffold_67 . biological_region 62934 62943 0.999 - . logic_name=eponine scaffold_67 . biological_region 62991 62996 0.999 + . logic_name=eponine scaffold_67 . repeat_region 63589 63648 . ? . description=dust scaffold_67 . biological_region 68072 68074 0.999 - . logic_name=eponine scaffold_67 ensembl protein_coding_gene 59878 63068 . - . ID=Phyra82041;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000016;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 59878 63068 . - . ID=Phyra82041;Parent=Phyra82041;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 59878 60333 . - 0 ID=Phyra82041;Parent=Phyra82041;rank=4 scaffold_67 . exon 59878 60333 . - . ID=Phyra82041.4;Parent=Phyra82041;constitutive=1;rank=4 scaffold_67 . CDS 60410 62594 . - 0 ID=Phyra82041;Parent=Phyra82041;rank=3 scaffold_67 . exon 60410 62594 . - . ID=Phyra82041.3;Parent=Phyra82041;constitutive=1;ensembl_phase=2;rank=3 scaffold_67 . CDS 62663 62717 . - 0 ID=Phyra82041;Parent=Phyra82041;rank=2 scaffold_67 . exon 62663 62717 . - . ID=Phyra82041.2;Parent=Phyra82041;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_67 . CDS 62792 63068 . - 0 ID=Phyra82041;Parent=Phyra82041;rank=1 scaffold_67 . exon 62792 63068 . - . ID=Phyra82041.1;Parent=Phyra82041;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 ensembl protein_coding_gene 67227 73989 . - . ID=Phyra96201;biotype=protein_coding;external_name=C_scaffold_67000003;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 67227 73989 . - . ID=Phyra96201;Parent=Phyra96201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 67227 67693 . - 0 ID=Phyra96201;Parent=Phyra96201;rank=12 scaffold_67 . exon 67227 67693 . - . ID=Phyra96201.12;Parent=Phyra96201;constitutive=1;ensembl_phase=1;rank=12 scaffold_67 . CDS 67793 67965 . - 0 ID=Phyra96201;Parent=Phyra96201;rank=11 scaffold_67 . exon 67793 67965 . - . ID=Phyra96201.11;Parent=Phyra96201;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_67 . CDS 68121 68340 . - 0 ID=Phyra96201;Parent=Phyra96201;rank=10 scaffold_67 . exon 68121 68340 . - . ID=Phyra96201.10;Parent=Phyra96201;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_67 . CDS 68435 68529 . - 0 ID=Phyra96201;Parent=Phyra96201;rank=9 scaffold_67 . exon 68435 68529 . - . ID=Phyra96201.9;Parent=Phyra96201;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_67 . CDS 68718 69039 . - 0 ID=Phyra96201;Parent=Phyra96201;rank=8 scaffold_67 . exon 68718 69039 . - . ID=Phyra96201.8;Parent=Phyra96201;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_67 . CDS 69203 69364 . - 0 ID=Phyra96201;Parent=Phyra96201;rank=7 scaffold_67 . exon 69203 69364 . - . ID=Phyra96201.7;Parent=Phyra96201;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_67 . CDS 69386 70535 . - 0 ID=Phyra96201;Parent=Phyra96201;rank=6 scaffold_67 . CDS 70680 70811 . - 0 ID=Phyra96201;Parent=Phyra96201;rank=5 scaffold_67 . CDS 71235 71416 . - 0 ID=Phyra96201;Parent=Phyra96201;rank=4 scaffold_67 . CDS 71657 72861 . - 0 ID=Phyra96201;Parent=Phyra96201;rank=3 scaffold_67 . CDS 73250 73292 . - 0 ID=Phyra96201;Parent=Phyra96201;rank=2 scaffold_67 . CDS 73494 73989 . - 0 ID=Phyra96201;Parent=Phyra96201;rank=1 scaffold_67 ensembl protein_coding_gene 78117 78748 . + . ID=Phyra82043;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000018;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 78117 78748 . + . ID=Phyra82043;Parent=Phyra82043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 78117 78161 . + 0 ID=Phyra82043;Parent=Phyra82043;rank=1 scaffold_67 . exon 78117 78161 . + . ID=Phyra82043.1;Parent=Phyra82043;constitutive=1;rank=1 scaffold_67 . CDS 78240 78621 . + 0 ID=Phyra82043;Parent=Phyra82043;rank=2 scaffold_67 . exon 78240 78621 . + . ID=Phyra82043.2;Parent=Phyra82043;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_67 . CDS 78714 78748 . + 0 ID=Phyra82043;Parent=Phyra82043;rank=3 scaffold_67 . exon 78714 78748 . + . ID=Phyra82043.3;Parent=Phyra82043;constitutive=1;ensembl_phase=1;rank=3 scaffold_67 ensembl protein_coding_gene 79140 80219 . - . ID=Phyra82044;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000019;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 79140 80219 . - . ID=Phyra82044;Parent=Phyra82044;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 79140 80219 . - 0 ID=Phyra82044;Parent=Phyra82044;rank=1 scaffold_67 . exon 79140 80219 . - . ID=Phyra82044.1;Parent=Phyra82044;constitutive=1;rank=1 scaffold_67 . exon 69386 70535 . - . ID=Phyra96201.6;Parent=Phyra96201;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_67 . exon 70680 70811 . - . ID=Phyra96201.5;Parent=Phyra96201;constitutive=1;rank=5 scaffold_67 . exon 71235 71416 . - . ID=Phyra96201.4;Parent=Phyra96201;constitutive=1;ensembl_phase=1;rank=4 scaffold_67 . exon 71657 72861 . - . ID=Phyra96201.3;Parent=Phyra96201;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_67 . exon 73250 73292 . - . ID=Phyra96201.2;Parent=Phyra96201;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_67 . exon 73494 73989 . - . ID=Phyra96201.1;Parent=Phyra96201;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 ensembl protein_coding_gene 77161 77352 . + . ID=Phyra96202;biotype=protein_coding;external_name=C_scaffold_67000004;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 77161 77352 . + . ID=Phyra96202;Parent=Phyra96202;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 77161 77240 . + 0 ID=Phyra96202;Parent=Phyra96202;rank=1 scaffold_67 . exon 77161 77240 . + . ID=Phyra96202.1;Parent=Phyra96202;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . CDS 77319 77352 . + 0 ID=Phyra96202;Parent=Phyra96202;rank=2 scaffold_67 . exon 77319 77352 . + . ID=Phyra96202.2;Parent=Phyra96202;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . biological_region 79622 79624 0.999 - . logic_name=eponine scaffold_67 ensembl protein_coding_gene 84904 87321 . - . ID=Phyra96203;biotype=protein_coding;external_name=C_scaffold_67000005;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 84904 87321 . - . ID=Phyra96203;Parent=Phyra96203;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 84904 84940 . - 0 ID=Phyra96203;Parent=Phyra96203;rank=7 scaffold_67 . exon 84904 84940 . - . ID=Phyra96203.7;Parent=Phyra96203;constitutive=1;ensembl_phase=2;rank=7 scaffold_67 . CDS 84994 85093 . - 0 ID=Phyra96203;Parent=Phyra96203;rank=6 scaffold_67 . exon 84994 85093 . - . ID=Phyra96203.6;Parent=Phyra96203;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_67 . CDS 85361 85540 . - 0 ID=Phyra96203;Parent=Phyra96203;rank=5 scaffold_67 . exon 85361 85540 . - . ID=Phyra96203.5;Parent=Phyra96203;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_67 . CDS 85658 85807 . - 0 ID=Phyra96203;Parent=Phyra96203;rank=4 scaffold_67 . exon 85658 85807 . - . ID=Phyra96203.4;Parent=Phyra96203;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_67 . CDS 85949 86096 . - 0 ID=Phyra96203;Parent=Phyra96203;rank=3 scaffold_67 . exon 85949 86096 . - . ID=Phyra96203.3;Parent=Phyra96203;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_67 . CDS 86118 86545 . - 0 ID=Phyra96203;Parent=Phyra96203;rank=2 scaffold_67 . exon 86118 86545 . - . ID=Phyra96203.2;Parent=Phyra96203;constitutive=1;ensembl_phase=1;rank=2 scaffold_67 . CDS 86802 87321 . - 0 ID=Phyra96203;Parent=Phyra96203;rank=1 scaffold_67 . exon 86802 87321 . - . ID=Phyra96203.1;Parent=Phyra96203;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . repeat_region 91371 91456 . ? . description=dust scaffold_67 . repeat_region 91374 91559 . ? . description=trf scaffold_67 . repeat_region 91467 91560 . ? . description=dust scaffold_67 . repeat_region 91614 91662 . ? . description=trf scaffold_67 . repeat_region 94208 94236 . ? . description=trf scaffold_67 ensembl protein_coding_gene 89295 90007 . - . ID=Phyra52281;biotype=protein_coding;external_name=gwEuk.67.36.1;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 89295 90007 . - . ID=Phyra52281;Parent=Phyra52281;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 89295 89396 . - 0 ID=Phyra52281;Parent=Phyra52281;rank=5 scaffold_67 . exon 89295 89396 . - . ID=Phyra52281.5;Parent=Phyra52281;constitutive=1;rank=5 scaffold_67 . CDS 89461 89559 . - 0 ID=Phyra52281;Parent=Phyra52281;rank=4 scaffold_67 . exon 89461 89559 . - . ID=Phyra52281.4;Parent=Phyra52281;constitutive=1;rank=4 scaffold_67 . CDS 89621 89680 . - 0 ID=Phyra52281;Parent=Phyra52281;rank=3 scaffold_67 . exon 89621 89680 . - . ID=Phyra52281.3;Parent=Phyra52281;constitutive=1;rank=3 scaffold_67 . CDS 89759 89847 . - 0 ID=Phyra52281;Parent=Phyra52281;rank=2 scaffold_67 . exon 89759 89847 . - . ID=Phyra52281.2;Parent=Phyra52281;constitutive=1;ensembl_phase=1;rank=2 scaffold_67 . CDS 89920 90007 . - 0 ID=Phyra52281;Parent=Phyra52281;rank=1 scaffold_67 . exon 89920 90007 . - . ID=Phyra52281.1;Parent=Phyra52281;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 ensembl protein_coding_gene 92225 97855 . - . ID=Phyra71989;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_67000002;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 92225 97855 . - . ID=Phyra71989;Parent=Phyra71989;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 92225 92539 . - 0 ID=Phyra71989;Parent=Phyra71989;rank=3 scaffold_67 . exon 92225 92539 . - . ID=Phyra71989.3;Parent=Phyra71989;constitutive=1;rank=3 scaffold_67 . CDS 92561 92638 . - 0 ID=Phyra71989;Parent=Phyra71989;rank=2 scaffold_67 . exon 92561 92638 . - . ID=Phyra71989.2;Parent=Phyra71989;constitutive=1;rank=2 scaffold_67 . CDS 93482 97855 . - 0 ID=Phyra71989;Parent=Phyra71989;rank=1 scaffold_67 . exon 93482 97855 . - . ID=Phyra71989.1;Parent=Phyra71989;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 90906 91826 . + . ID=Phyra96206;biotype=protein_coding;external_name=C_scaffold_67000008;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 90906 91826 . + . ID=Phyra96206;Parent=Phyra96206;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 90906 91826 . + 0 ID=Phyra96206;Parent=Phyra96206;rank=1 scaffold_67 . exon 90906 91826 . + . ID=Phyra96206.1;Parent=Phyra96206;constitutive=1;rank=1 scaffold_67 . biological_region 106577 106581 0.999 + . logic_name=eponine scaffold_67 ensembl protein_coding_gene 99487 106386 . - . ID=Phyra96208;biotype=protein_coding;external_name=C_scaffold_67000010;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 99487 106386 . - . ID=Phyra96208;Parent=Phyra96208;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 99487 100247 . - 0 ID=Phyra96208;Parent=Phyra96208;rank=15 scaffold_67 . exon 99487 100247 . - . ID=Phyra96208.15;Parent=Phyra96208;constitutive=1;ensembl_phase=1;rank=15 scaffold_67 . CDS 100306 100420 . - 0 ID=Phyra96208;Parent=Phyra96208;rank=14 scaffold_67 . exon 100306 100420 . - . ID=Phyra96208.14;Parent=Phyra96208;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_67 . CDS 100490 101425 . - 0 ID=Phyra96208;Parent=Phyra96208;rank=13 scaffold_67 . exon 100490 101425 . - . ID=Phyra96208.13;Parent=Phyra96208;constitutive=1;rank=13 scaffold_67 . CDS 101537 103021 . - 0 ID=Phyra96208;Parent=Phyra96208;rank=12 scaffold_67 . exon 101537 103021 . - . ID=Phyra96208.12;Parent=Phyra96208;constitutive=1;rank=12 scaffold_67 . CDS 103148 103241 . - 0 ID=Phyra96208;Parent=Phyra96208;rank=11 scaffold_67 . exon 103148 103241 . - . ID=Phyra96208.11;Parent=Phyra96208;constitutive=1;ensembl_phase=2;rank=11 scaffold_67 . CDS 103341 103584 . - 0 ID=Phyra96208;Parent=Phyra96208;rank=10 scaffold_67 . exon 103341 103584 . - . ID=Phyra96208.10;Parent=Phyra96208;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_67 . CDS 103822 103993 . - 0 ID=Phyra96208;Parent=Phyra96208;rank=9 scaffold_67 . exon 103822 103993 . - . ID=Phyra96208.9;Parent=Phyra96208;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_67 . CDS 104096 104266 . - 0 ID=Phyra96208;Parent=Phyra96208;rank=8 scaffold_67 . exon 104096 104266 . - . ID=Phyra96208.8;Parent=Phyra96208;constitutive=1;rank=8 scaffold_67 . CDS 104312 104627 . - 0 ID=Phyra96208;Parent=Phyra96208;rank=7 scaffold_67 . exon 104312 104627 . - . ID=Phyra96208.7;Parent=Phyra96208;constitutive=1;ensembl_phase=2;rank=7 scaffold_67 . CDS 104683 104756 . - 0 ID=Phyra96208;Parent=Phyra96208;rank=6 scaffold_67 . exon 104683 104756 . - . ID=Phyra96208.6;Parent=Phyra96208;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_67 . CDS 104831 104934 . - 0 ID=Phyra96208;Parent=Phyra96208;rank=5 scaffold_67 . exon 104831 104934 . - . ID=Phyra96208.5;Parent=Phyra96208;constitutive=1;ensembl_phase=1;rank=5 scaffold_67 . CDS 105019 105120 . - 0 ID=Phyra96208;Parent=Phyra96208;rank=4 scaffold_67 . exon 105019 105120 . - . ID=Phyra96208.4;Parent=Phyra96208;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_67 . CDS 105178 105557 . - 0 ID=Phyra96208;Parent=Phyra96208;rank=3 scaffold_67 . exon 105178 105557 . - . ID=Phyra96208.3;Parent=Phyra96208;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_67 . CDS 105687 106173 . - 0 ID=Phyra96208;Parent=Phyra96208;rank=2 scaffold_67 . exon 105687 106173 . - . ID=Phyra96208.2;Parent=Phyra96208;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_67 . CDS 106245 106386 . - 0 ID=Phyra96208;Parent=Phyra96208;rank=1 scaffold_67 . exon 106245 106386 . - . ID=Phyra96208.1;Parent=Phyra96208;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 ensembl protein_coding_gene 106616 108714 . + . ID=Phyra96210;biotype=protein_coding;external_name=C_scaffold_67000012;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 106616 108714 . + . ID=Phyra96210;Parent=Phyra96210;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 106616 106762 . + 0 ID=Phyra96210;Parent=Phyra96210;rank=1 scaffold_67 . exon 106616 106762 . + . ID=Phyra96210.1;Parent=Phyra96210;constitutive=1;rank=1 scaffold_67 . CDS 106793 106987 . + 0 ID=Phyra96210;Parent=Phyra96210;rank=2 scaffold_67 . exon 106793 106987 . + . ID=Phyra96210.2;Parent=Phyra96210;constitutive=1;rank=2 scaffold_67 . CDS 107080 107357 . + 0 ID=Phyra96210;Parent=Phyra96210;rank=3 scaffold_67 . exon 107080 107357 . + . ID=Phyra96210.3;Parent=Phyra96210;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_67 . CDS 107429 107513 . + 0 ID=Phyra96210;Parent=Phyra96210;rank=4 scaffold_67 . exon 107429 107513 . + . ID=Phyra96210.4;Parent=Phyra96210;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 . CDS 107561 107615 . + 0 ID=Phyra96210;Parent=Phyra96210;rank=5 scaffold_67 . exon 107561 107615 . + . ID=Phyra96210.5;Parent=Phyra96210;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_67 . CDS 107682 107836 . + 0 ID=Phyra96210;Parent=Phyra96210;rank=6 scaffold_67 . exon 107682 107836 . + . ID=Phyra96210.6;Parent=Phyra96210;constitutive=1;ensembl_phase=1;rank=6 scaffold_67 . CDS 107929 108327 . + 0 ID=Phyra96210;Parent=Phyra96210;rank=7 scaffold_67 . exon 107929 108327 . + . ID=Phyra96210.7;Parent=Phyra96210;constitutive=1;rank=7 scaffold_67 . CDS 108547 108714 . + 0 ID=Phyra96210;Parent=Phyra96210;rank=8 scaffold_67 . exon 108547 108714 . + . ID=Phyra96210.8;Parent=Phyra96210;constitutive=1;rank=8 scaffold_67 . repeat_region 109241 109285 . ? . description=trf scaffold_67 . repeat_region 111099 111155 . ? . description=trf scaffold_67 ensembl pseudogene 113768 114480 . + . ID=Phyra52296;biotype=pseudogene;external_name=gwEuk.67.51.1;logic_name=jgi_phyra1 scaffold_67 ensembl pseudogene 113768 114480 . + . ID=Phyra52296;Parent=Phyra52296;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_67 . exon 113768 114480 . + . ID=Phyra52296.1;Parent=Phyra52296;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 ensembl protein_coding_gene 111214 112107 . - . ID=Phyra82052;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000027;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 111214 112107 . - . ID=Phyra82052;Parent=Phyra82052;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 111214 111291 . - 0 ID=Phyra82052;Parent=Phyra82052;rank=3 scaffold_67 . exon 111214 111291 . - . ID=Phyra82052.3;Parent=Phyra82052;constitutive=1;rank=3 scaffold_67 . CDS 111370 111711 . - 0 ID=Phyra82052;Parent=Phyra82052;rank=2 scaffold_67 . exon 111370 111711 . - . ID=Phyra82052.2;Parent=Phyra82052;constitutive=1;rank=2 scaffold_67 . CDS 111892 112107 . - 0 ID=Phyra82052;Parent=Phyra82052;rank=1 scaffold_67 . exon 111892 112107 . - . ID=Phyra82052.1;Parent=Phyra82052;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 117158 123088 . + . ID=Phyra82054;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000029;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 117158 123088 . + . ID=Phyra82054;Parent=Phyra82054;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 117158 123088 . + 0 ID=Phyra82054;Parent=Phyra82054;rank=1 scaffold_67 . exon 117158 123088 . + . ID=Phyra82054.1;Parent=Phyra82054;constitutive=1;rank=1 scaffold_67 . biological_region 122796 122796 0.999 + . logic_name=eponine scaffold_67 . biological_region 126093 126096 0.999 - . logic_name=eponine scaffold_67 ensembl protein_coding_gene 123510 125207 . + . ID=Phyra82055;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000030;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 123510 125207 . + . ID=Phyra82055;Parent=Phyra82055;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 123510 124630 . + 0 ID=Phyra82055;Parent=Phyra82055;rank=1 scaffold_67 . exon 123510 124630 . + . ID=Phyra82055.1;Parent=Phyra82055;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . CDS 124700 125207 . + 0 ID=Phyra82055;Parent=Phyra82055;rank=2 scaffold_67 . exon 124700 125207 . + . ID=Phyra82055.2;Parent=Phyra82055;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 ensembl protein_coding_gene 125899 127950 . + . ID=Phyra82056;biotype=protein_coding;description=MAP kinase [Source:UniProtKB/TrEMBL%3BAcc:B9VTN8];external_name=fgenesh1_pg.C_scaffold_67000031;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 125899 127950 . + . ID=Phyra82056;Parent=Phyra82056;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 125899 127950 . + 0 ID=Phyra82056;Parent=Phyra82056;rank=1 scaffold_67 . exon 125899 127950 . + . ID=Phyra82056.1;Parent=Phyra82056;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 128304 132368 . + . ID=Phyra82057;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000032;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 128304 132368 . + . ID=Phyra82057;Parent=Phyra82057;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 128304 128922 . + 0 ID=Phyra82057;Parent=Phyra82057;rank=1 scaffold_67 . exon 128304 128922 . + . ID=Phyra82057.1;Parent=Phyra82057;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . CDS 129151 129502 . + 0 ID=Phyra82057;Parent=Phyra82057;rank=2 scaffold_67 . CDS 129565 130763 . + 0 ID=Phyra82057;Parent=Phyra82057;rank=3 scaffold_67 . CDS 131557 132368 . + 0 ID=Phyra82057;Parent=Phyra82057;rank=4 scaffold_67 . repeat_region 131180 131241 . ? . description=dust scaffold_67 . repeat_region 131183 131219 . ? . description=trf scaffold_67 . repeat_region 131206 131261 . ? . description=trf scaffold_67 . repeat_region 131220 131279 . ? . description=trf scaffold_67 . repeat_region 132421 132429 . ? . description=dust scaffold_67 ensembl protein_coding_gene 135541 137520 . - . ID=Phyra71991;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_67000004;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 135541 137520 . - . ID=Phyra71991;Parent=Phyra71991;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 135541 137520 . - 0 ID=Phyra71991;Parent=Phyra71991;rank=1 scaffold_67 . exon 135541 137520 . - . ID=Phyra71991.1;Parent=Phyra71991;constitutive=1;rank=1 scaffold_67 . exon 129151 129502 . + . ID=Phyra82057.2;Parent=Phyra82057;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_67 . exon 129565 130763 . + . ID=Phyra82057.3;Parent=Phyra82057;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_67 . exon 131557 132368 . + . ID=Phyra82057.4;Parent=Phyra82057;constitutive=1;ensembl_phase=1;rank=4 scaffold_67 ensembl protein_coding_gene 133367 135391 . - . ID=Phyra82059;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000034;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 133367 135391 . - . ID=Phyra82059;Parent=Phyra82059;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 133367 135391 . - 0 ID=Phyra82059;Parent=Phyra82059;rank=1 scaffold_67 . exon 133367 135391 . - . ID=Phyra82059.1;Parent=Phyra82059;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 138295 138849 . + . ID=Phyra82061;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000036;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 138295 138849 . + . ID=Phyra82061;Parent=Phyra82061;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 138295 138638 . + 0 ID=Phyra82061;Parent=Phyra82061;rank=1 scaffold_67 . exon 138295 138638 . + . ID=Phyra82061.1;Parent=Phyra82061;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . CDS 138756 138849 . + 0 ID=Phyra82061;Parent=Phyra82061;rank=2 scaffold_67 ensembl protein_coding_gene 132495 133211 . - . ID=Phyra96213;biotype=protein_coding;external_name=C_scaffold_67000015;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 132495 133211 . - . ID=Phyra96213;Parent=Phyra96213;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 132495 132983 . - 0 ID=Phyra96213;Parent=Phyra96213;rank=2 scaffold_67 . exon 132495 132983 . - . ID=Phyra96213.2;Parent=Phyra96213;constitutive=1;rank=2 scaffold_67 . CDS 133080 133211 . - 0 ID=Phyra96213;Parent=Phyra96213;rank=1 scaffold_67 . exon 133080 133211 . - . ID=Phyra96213.1;Parent=Phyra96213;constitutive=1;rank=1 scaffold_67 . biological_region 145465 145467 0.999 - . logic_name=eponine scaffold_67 . biological_region 145733 145737 0.999 + . logic_name=eponine scaffold_67 . biological_region 146073 146076 0.999 - . logic_name=eponine scaffold_67 . biological_region 146158 146161 0.999 + . logic_name=eponine scaffold_67 . biological_region 146267 146268 0.999 - . logic_name=eponine scaffold_67 . biological_region 146342 146343 0.999 + . logic_name=eponine scaffold_67 . biological_region 146432 146436 0.999 + . logic_name=eponine scaffold_67 . biological_region 146450 146451 0.999 + . logic_name=eponine scaffold_67 ensembl protein_coding_gene 146894 148876 . + . ID=Phyra71992;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_67000005;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 146894 148876 . + . ID=Phyra71992;Parent=Phyra71992;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 146894 148876 . + 0 ID=Phyra71992;Parent=Phyra71992;rank=1 scaffold_67 . exon 146894 148876 . + . ID=Phyra71992.1;Parent=Phyra71992;constitutive=1;rank=1 scaffold_67 . exon 138756 138849 . + . ID=Phyra82061.2;Parent=Phyra82061;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 ensembl protein_coding_gene 142487 146554 . - . ID=Phyra82063;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000038;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 142487 146554 . - . ID=Phyra82063;Parent=Phyra82063;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 142487 146554 . - 0 ID=Phyra82063;Parent=Phyra82063;rank=1 scaffold_67 . exon 142487 146554 . - . ID=Phyra82063.1;Parent=Phyra82063;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 139112 142325 . + . ID=Phyra96215;biotype=protein_coding;external_name=C_scaffold_67000017;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 139112 142325 . + . ID=Phyra96215;Parent=Phyra96215;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 139112 139295 . + 0 ID=Phyra96215;Parent=Phyra96215;rank=1 scaffold_67 . exon 139112 139295 . + . ID=Phyra96215.1;Parent=Phyra96215;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . CDS 139569 141023 . + 0 ID=Phyra96215;Parent=Phyra96215;rank=2 scaffold_67 . exon 139569 141023 . + . ID=Phyra96215.2;Parent=Phyra96215;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_67 . CDS 141051 141565 . + 0 ID=Phyra96215;Parent=Phyra96215;rank=3 scaffold_67 . exon 141051 141565 . + . ID=Phyra96215.3;Parent=Phyra96215;constitutive=1;ensembl_phase=1;rank=3 scaffold_67 . CDS 141642 141727 . + 0 ID=Phyra96215;Parent=Phyra96215;rank=4 scaffold_67 . exon 141642 141727 . + . ID=Phyra96215.4;Parent=Phyra96215;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_67 . CDS 141806 142129 . + 0 ID=Phyra96215;Parent=Phyra96215;rank=5 scaffold_67 . exon 141806 142129 . + . ID=Phyra96215.5;Parent=Phyra96215;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_67 . CDS 142277 142325 . + 0 ID=Phyra96215;Parent=Phyra96215;rank=6 scaffold_67 . exon 142277 142325 . + . ID=Phyra96215.6;Parent=Phyra96215;constitutive=1;ensembl_phase=2;rank=6 scaffold_67 . repeat_region 154416 154461 . ? . description=trf scaffold_67 ensembl protein_coding_gene 149086 150528 . - . ID=Phyra82065;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000040;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 149086 150528 . - . ID=Phyra82065;Parent=Phyra82065;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 149086 150528 . - 0 ID=Phyra82065;Parent=Phyra82065;rank=1 scaffold_67 . exon 149086 150528 . - . ID=Phyra82065.1;Parent=Phyra82065;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 150771 152835 . - . ID=Phyra82066;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000041;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 150771 152835 . - . ID=Phyra82066;Parent=Phyra82066;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 150771 152780 . - 0 ID=Phyra82066;Parent=Phyra82066;rank=2 scaffold_67 . exon 150771 152780 . - . ID=Phyra82066.2;Parent=Phyra82066;constitutive=1;rank=2 scaffold_67 . CDS 152818 152835 . - 0 ID=Phyra82066;Parent=Phyra82066;rank=1 scaffold_67 . exon 152818 152835 . - . ID=Phyra82066.1;Parent=Phyra82066;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 153448 153990 . + . ID=Phyra82067;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000042;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 153448 153990 . + . ID=Phyra82067;Parent=Phyra82067;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 153448 153990 . + 0 ID=Phyra82067;Parent=Phyra82067;rank=1 scaffold_67 . exon 153448 153990 . + . ID=Phyra82067.1;Parent=Phyra82067;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 154552 156543 . - . ID=Phyra82068;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000043;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 154552 156543 . - . ID=Phyra82068;Parent=Phyra82068;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 154552 156543 . - 0 ID=Phyra82068;Parent=Phyra82068;rank=1 scaffold_67 . exon 154552 156543 . - . ID=Phyra82068.1;Parent=Phyra82068;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 158236 163970 . - . ID=Phyra82069;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000044;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 158236 163970 . - . ID=Phyra82069;Parent=Phyra82069;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 158236 158970 . - 0 ID=Phyra82069;Parent=Phyra82069;rank=10 scaffold_67 . exon 158236 158970 . - . ID=Phyra82069.10;Parent=Phyra82069;constitutive=1;rank=10 scaffold_67 . CDS 159042 159182 . - 0 ID=Phyra82069;Parent=Phyra82069;rank=9 scaffold_67 . CDS 159369 159544 . - 0 ID=Phyra82069;Parent=Phyra82069;rank=8 scaffold_67 . CDS 159791 160675 . - 0 ID=Phyra82069;Parent=Phyra82069;rank=7 scaffold_67 . CDS 161201 162274 . - 0 ID=Phyra82069;Parent=Phyra82069;rank=6 scaffold_67 . CDS 162308 162378 . - 0 ID=Phyra82069;Parent=Phyra82069;rank=5 scaffold_67 . CDS 162457 162674 . - 0 ID=Phyra82069;Parent=Phyra82069;rank=4 scaffold_67 . CDS 162783 162863 . - 0 ID=Phyra82069;Parent=Phyra82069;rank=3 scaffold_67 . CDS 162951 163685 . - 0 ID=Phyra82069;Parent=Phyra82069;rank=2 scaffold_67 . CDS 163887 163970 . - 0 ID=Phyra82069;Parent=Phyra82069;rank=1 scaffold_67 . biological_region 162647 162652 0.999 - . logic_name=eponine scaffold_67 . exon 159042 159182 . - . ID=Phyra82069.9;Parent=Phyra82069;constitutive=1;rank=9 scaffold_67 . exon 159369 159544 . - . ID=Phyra82069.8;Parent=Phyra82069;constitutive=1;ensembl_phase=1;rank=8 scaffold_67 . exon 159791 160675 . - . ID=Phyra82069.7;Parent=Phyra82069;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_67 . exon 161201 162274 . - . ID=Phyra82069.6;Parent=Phyra82069;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_67 . exon 162308 162378 . - . ID=Phyra82069.5;Parent=Phyra82069;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_67 . exon 162457 162674 . - . ID=Phyra82069.4;Parent=Phyra82069;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_67 . exon 162783 162863 . - . ID=Phyra82069.3;Parent=Phyra82069;constitutive=1;rank=3 scaffold_67 . exon 162951 163685 . - . ID=Phyra82069.2;Parent=Phyra82069;constitutive=1;rank=2 scaffold_67 . exon 163887 163970 . - . ID=Phyra82069.1;Parent=Phyra82069;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 164153 166344 . + . ID=Phyra82070;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000045;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 164153 166344 . + . ID=Phyra82070;Parent=Phyra82070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 164153 164343 . + 0 ID=Phyra82070;Parent=Phyra82070;rank=1 scaffold_67 . exon 164153 164343 . + . ID=Phyra82070.1;Parent=Phyra82070;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . CDS 164413 164524 . + 0 ID=Phyra82070;Parent=Phyra82070;rank=2 scaffold_67 . exon 164413 164524 . + . ID=Phyra82070.2;Parent=Phyra82070;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 164700 164804 . + 0 ID=Phyra82070;Parent=Phyra82070;rank=3 scaffold_67 . exon 164700 164804 . + . ID=Phyra82070.3;Parent=Phyra82070;constitutive=1;rank=3 scaffold_67 . CDS 164872 166344 . + 0 ID=Phyra82070;Parent=Phyra82070;rank=4 scaffold_67 . exon 164872 166344 . + . ID=Phyra82070.4;Parent=Phyra82070;constitutive=1;rank=4 scaffold_67 . repeat_region 172584 172591 . ? . description=dust scaffold_67 ensembl protein_coding_gene 172135 174092 . + . ID=Phyra82072;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000047;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 172135 174092 . + . ID=Phyra82072;Parent=Phyra82072;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 172135 172188 . + 0 ID=Phyra82072;Parent=Phyra82072;rank=1 scaffold_67 . exon 172135 172188 . + . ID=Phyra82072.1;Parent=Phyra82072;constitutive=1;rank=1 scaffold_67 . CDS 172256 172430 . + 0 ID=Phyra82072;Parent=Phyra82072;rank=2 scaffold_67 . exon 172256 172430 . + . ID=Phyra82072.2;Parent=Phyra82072;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_67 . CDS 172547 172571 . + 0 ID=Phyra82072;Parent=Phyra82072;rank=3 scaffold_67 . exon 172547 172571 . + . ID=Phyra82072.3;Parent=Phyra82072;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_67 . CDS 172649 172757 . + 0 ID=Phyra82072;Parent=Phyra82072;rank=4 scaffold_67 . exon 172649 172757 . + . ID=Phyra82072.4;Parent=Phyra82072;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 . CDS 172846 173180 . + 0 ID=Phyra82072;Parent=Phyra82072;rank=5 scaffold_67 . exon 172846 173180 . + . ID=Phyra82072.5;Parent=Phyra82072;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_67 . CDS 173362 173765 . + 0 ID=Phyra82072;Parent=Phyra82072;rank=6 scaffold_67 . exon 173362 173765 . + . ID=Phyra82072.6;Parent=Phyra82072;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_67 . CDS 173848 174092 . + 0 ID=Phyra82072;Parent=Phyra82072;rank=7 scaffold_67 . exon 173848 174092 . + . ID=Phyra82072.7;Parent=Phyra82072;constitutive=1;ensembl_phase=1;rank=7 scaffold_67 ensembl protein_coding_gene 175177 176772 . + . ID=Phyra82073;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000048;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 175177 176772 . + . ID=Phyra82073;Parent=Phyra82073;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 175177 176013 . + 0 ID=Phyra82073;Parent=Phyra82073;rank=1 scaffold_67 . exon 175177 176013 . + . ID=Phyra82073.1;Parent=Phyra82073;constitutive=1;rank=1 scaffold_67 . CDS 176080 176149 . + 0 ID=Phyra82073;Parent=Phyra82073;rank=2 scaffold_67 . exon 176080 176149 . + . ID=Phyra82073.2;Parent=Phyra82073;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_67 . CDS 176227 176378 . + 0 ID=Phyra82073;Parent=Phyra82073;rank=3 scaffold_67 . exon 176227 176378 . + . ID=Phyra82073.3;Parent=Phyra82073;constitutive=1;ensembl_phase=1;rank=3 scaffold_67 . CDS 176452 176772 . + 0 ID=Phyra82073;Parent=Phyra82073;rank=4 scaffold_67 . exon 176452 176772 . + . ID=Phyra82073.4;Parent=Phyra82073;constitutive=1;rank=4 scaffold_67 ensembl protein_coding_gene 177166 178297 . - . ID=Phyra82074;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000049;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 177166 178297 . - . ID=Phyra82074;Parent=Phyra82074;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 177166 177192 . - 0 ID=Phyra82074;Parent=Phyra82074;rank=4 scaffold_67 . exon 177166 177192 . - . ID=Phyra82074.4;Parent=Phyra82074;constitutive=1;rank=4 scaffold_67 . CDS 177218 177838 . - 0 ID=Phyra82074;Parent=Phyra82074;rank=3 scaffold_67 . exon 177218 177838 . - . ID=Phyra82074.3;Parent=Phyra82074;constitutive=1;rank=3 scaffold_67 . CDS 177920 178011 . - 0 ID=Phyra82074;Parent=Phyra82074;rank=2 scaffold_67 . exon 177920 178011 . - . ID=Phyra82074.2;Parent=Phyra82074;constitutive=1;ensembl_phase=1;rank=2 scaffold_67 . CDS 178078 178297 . - 0 ID=Phyra82074;Parent=Phyra82074;rank=1 scaffold_67 . exon 178078 178297 . - . ID=Phyra82074.1;Parent=Phyra82074;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 ensembl protein_coding_gene 170221 171777 . - . ID=Phyra96218;biotype=protein_coding;external_name=C_scaffold_67000020;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 170221 171777 . - . ID=Phyra96218;Parent=Phyra96218;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 170221 170346 . - 0 ID=Phyra96218;Parent=Phyra96218;rank=5 scaffold_67 . exon 170221 170346 . - . ID=Phyra96218.5;Parent=Phyra96218;constitutive=1;rank=5 scaffold_67 . CDS 170418 170623 . - 0 ID=Phyra96218;Parent=Phyra96218;rank=4 scaffold_67 . exon 170418 170623 . - . ID=Phyra96218.4;Parent=Phyra96218;constitutive=1;ensembl_phase=1;rank=4 scaffold_67 . CDS 170700 171033 . - 0 ID=Phyra96218;Parent=Phyra96218;rank=3 scaffold_67 . exon 170700 171033 . - . ID=Phyra96218.3;Parent=Phyra96218;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_67 . CDS 171113 171533 . - 0 ID=Phyra96218;Parent=Phyra96218;rank=2 scaffold_67 . exon 171113 171533 . - . ID=Phyra96218.2;Parent=Phyra96218;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 171632 171777 . - 0 ID=Phyra96218;Parent=Phyra96218;rank=1 scaffold_67 . exon 171632 171777 . - . ID=Phyra96218.1;Parent=Phyra96218;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . biological_region 178446 178448 0.999 + . logic_name=eponine scaffold_67 . biological_region 179117 179120 0.999 + . logic_name=eponine scaffold_67 . repeat_region 184327 184353 . ? . description=trf scaffold_67 . repeat_region 184690 184859 . ? . description=trf scaffold_67 . repeat_region 184693 184877 . ? . description=trf scaffold_67 . repeat_region 186338 186389 . ? . description=trf scaffold_67 . repeat_region 186648 186695 . ? . description=trf scaffold_67 . biological_region 186905 186907 0.999 + . logic_name=eponine scaffold_67 ensembl protein_coding_gene 178642 179670 . + . ID=Phyra82075;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000050;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 178642 179670 . + . ID=Phyra82075;Parent=Phyra82075;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 178642 179670 . + 0 ID=Phyra82075;Parent=Phyra82075;rank=1 scaffold_67 . exon 178642 179670 . + . ID=Phyra82075.1;Parent=Phyra82075;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 182879 183781 . - . ID=Phyra82077;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000052;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 182879 183781 . - . ID=Phyra82077;Parent=Phyra82077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 182879 183781 . - 0 ID=Phyra82077;Parent=Phyra82077;rank=1 scaffold_67 . exon 182879 183781 . - . ID=Phyra82077.1;Parent=Phyra82077;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 184641 185626 . - . ID=Phyra82078;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000053;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 184641 185626 . - . ID=Phyra82078;Parent=Phyra82078;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 184641 185230 . - 0 ID=Phyra82078;Parent=Phyra82078;rank=2 scaffold_67 . exon 184641 185230 . - . ID=Phyra82078.2;Parent=Phyra82078;constitutive=1;ensembl_phase=1;rank=2 scaffold_67 . CDS 185362 185626 . - 0 ID=Phyra82078;Parent=Phyra82078;rank=1 scaffold_67 . exon 185362 185626 . - . ID=Phyra82078.1;Parent=Phyra82078;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 ensembl protein_coding_gene 186268 186795 . - . ID=Phyra82079;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000054;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 186268 186795 . - . ID=Phyra82079;Parent=Phyra82079;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 186268 186795 . - 0 ID=Phyra82079;Parent=Phyra82079;rank=1 scaffold_67 . exon 186268 186795 . - . ID=Phyra82079.1;Parent=Phyra82079;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 181684 182233 . - . ID=Phyra96220;biotype=protein_coding;external_name=C_scaffold_67000022;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 181684 182233 . - . ID=Phyra96220;Parent=Phyra96220;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 181684 181741 . - 0 ID=Phyra96220;Parent=Phyra96220;rank=2 scaffold_67 . exon 181684 181741 . - . ID=Phyra96220.2;Parent=Phyra96220;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 181779 182233 . - 0 ID=Phyra96220;Parent=Phyra96220;rank=1 scaffold_67 . exon 181779 182233 . - . ID=Phyra96220.1;Parent=Phyra96220;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . repeat_region 187529 193289 . ? . description=dust scaffold_67 . repeat_region 193581 193588 . ? . description=dust scaffold_67 . repeat_region 194366 194392 . ? . description=dust scaffold_67 ensembl protein_coding_gene 196166 196372 . - . ID=Phyra52246;biotype=protein_coding;external_name=gwEuk.67.1.1;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 196166 196372 . - . ID=Phyra52246;Parent=Phyra52246;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 196166 196372 . - 0 ID=Phyra52246;Parent=Phyra52246;rank=1 scaffold_67 . exon 196166 196372 . - . ID=Phyra52246.1;Parent=Phyra52246;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 196631 196864 . - . ID=Phyra52248;biotype=protein_coding;external_name=gwEuk.67.3.1;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 196631 196864 . - . ID=Phyra52248;Parent=Phyra52248;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 196631 196864 . - 0 ID=Phyra52248;Parent=Phyra52248;rank=1 scaffold_67 . exon 196631 196864 . - . ID=Phyra52248.1;Parent=Phyra52248;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 194439 195209 . - . ID=Phyra82080;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000055;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 194439 195209 . - . ID=Phyra82080;Parent=Phyra82080;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 194439 195209 . - 0 ID=Phyra82080;Parent=Phyra82080;rank=1 scaffold_67 . exon 194439 195209 . - . ID=Phyra82080.1;Parent=Phyra82080;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 197668 198272 . - . ID=Phyra82081;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000056;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 197668 198272 . - . ID=Phyra82081;Parent=Phyra82081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 197668 197678 . - 0 ID=Phyra82081;Parent=Phyra82081;rank=2 scaffold_67 . exon 197668 197678 . - . ID=Phyra82081.2;Parent=Phyra82081;constitutive=1;ensembl_phase=1;rank=2 scaffold_67 . CDS 197786 198272 . - 0 ID=Phyra82081;Parent=Phyra82081;rank=1 scaffold_67 . exon 197786 198272 . - . ID=Phyra82081.1;Parent=Phyra82081;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . biological_region 199526 199530 0.999 - . logic_name=eponine scaffold_67 . biological_region 202031 202033 0.999 + . logic_name=eponine scaffold_67 ensembl protein_coding_gene 199389 199940 . + . ID=Phyra82082;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000057;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 199389 199940 . + . ID=Phyra82082;Parent=Phyra82082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 199389 199940 . + 0 ID=Phyra82082;Parent=Phyra82082;rank=1 scaffold_67 . exon 199389 199940 . + . ID=Phyra82082.1;Parent=Phyra82082;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 200450 202172 . - . ID=Phyra82083;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000058;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 200450 202172 . - . ID=Phyra82083;Parent=Phyra82083;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 200450 200633 . - 0 ID=Phyra82083;Parent=Phyra82083;rank=2 scaffold_67 . exon 200450 200633 . - . ID=Phyra82083.2;Parent=Phyra82083;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 200713 202172 . - 0 ID=Phyra82083;Parent=Phyra82083;rank=1 scaffold_67 . exon 200713 202172 . - . ID=Phyra82083.1;Parent=Phyra82083;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 ensembl protein_coding_gene 202283 204636 . + . ID=Phyra96223;biotype=protein_coding;external_name=C_scaffold_67000025;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 202283 204636 . + . ID=Phyra96223;Parent=Phyra96223;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 202283 202411 . + 0 ID=Phyra96223;Parent=Phyra96223;rank=1 scaffold_67 . exon 202283 202411 . + . ID=Phyra96223.1;Parent=Phyra96223;constitutive=1;rank=1 scaffold_67 . CDS 202457 202675 . + 0 ID=Phyra96223;Parent=Phyra96223;rank=2 scaffold_67 . exon 202457 202675 . + . ID=Phyra96223.2;Parent=Phyra96223;constitutive=1;rank=2 scaffold_67 . CDS 202741 202880 . + 0 ID=Phyra96223;Parent=Phyra96223;rank=3 scaffold_67 . exon 202741 202880 . + . ID=Phyra96223.3;Parent=Phyra96223;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_67 . CDS 203077 203518 . + 0 ID=Phyra96223;Parent=Phyra96223;rank=4 scaffold_67 . exon 203077 203518 . + . ID=Phyra96223.4;Parent=Phyra96223;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 . CDS 203595 203936 . + 0 ID=Phyra96223;Parent=Phyra96223;rank=5 scaffold_67 . exon 203595 203936 . + . ID=Phyra96223.5;Parent=Phyra96223;constitutive=1;rank=5 scaffold_67 . CDS 204047 204459 . + 0 ID=Phyra96223;Parent=Phyra96223;rank=6 scaffold_67 . exon 204047 204459 . + . ID=Phyra96223.6;Parent=Phyra96223;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_67 . CDS 204534 204636 . + 0 ID=Phyra96223;Parent=Phyra96223;rank=7 scaffold_67 . exon 204534 204636 . + . ID=Phyra96223.7;Parent=Phyra96223;constitutive=1;ensembl_phase=2;rank=7 scaffold_67 ensembl protein_coding_gene 205320 206943 . + . ID=Phyra96224;biotype=protein_coding;external_name=C_scaffold_67000026;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 205320 206943 . + . ID=Phyra96224;Parent=Phyra96224;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 205320 205415 . + 0 ID=Phyra96224;Parent=Phyra96224;rank=1 scaffold_67 . exon 205320 205415 . + . ID=Phyra96224.1;Parent=Phyra96224;constitutive=1;rank=1 scaffold_67 . CDS 205615 205683 . + 0 ID=Phyra96224;Parent=Phyra96224;rank=2 scaffold_67 . exon 205615 205683 . + . ID=Phyra96224.2;Parent=Phyra96224;constitutive=1;rank=2 scaffold_67 . CDS 205757 205801 . + 0 ID=Phyra96224;Parent=Phyra96224;rank=3 scaffold_67 . exon 205757 205801 . + . ID=Phyra96224.3;Parent=Phyra96224;constitutive=1;rank=3 scaffold_67 . CDS 205888 206001 . + 0 ID=Phyra96224;Parent=Phyra96224;rank=4 scaffold_67 . exon 205888 206001 . + . ID=Phyra96224.4;Parent=Phyra96224;constitutive=1;rank=4 scaffold_67 . CDS 206068 206501 . + 0 ID=Phyra96224;Parent=Phyra96224;rank=5 scaffold_67 . exon 206068 206501 . + . ID=Phyra96224.5;Parent=Phyra96224;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_67 . CDS 206649 206830 . + 0 ID=Phyra96224;Parent=Phyra96224;rank=6 scaffold_67 . exon 206649 206830 . + . ID=Phyra96224.6;Parent=Phyra96224;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_67 . CDS 206894 206943 . + 0 ID=Phyra96224;Parent=Phyra96224;rank=7 scaffold_67 . exon 206894 206943 . + . ID=Phyra96224.7;Parent=Phyra96224;constitutive=1;ensembl_phase=1;rank=7 scaffold_67 . repeat_region 212621 212658 . ? . description=trf scaffold_67 . repeat_region 216697 216729 . ? . description=trf scaffold_67 . repeat_region 216934 219686 . ? . description=dust scaffold_67 ensembl protein_coding_gene 207972 209231 . - . ID=Phyra82085;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000060;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 207972 209231 . - . ID=Phyra82085;Parent=Phyra82085;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 207972 209231 . - 0 ID=Phyra82085;Parent=Phyra82085;rank=1 scaffold_67 . exon 207972 209231 . - . ID=Phyra82085.1;Parent=Phyra82085;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 209348 210190 . + . ID=Phyra82086;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000061;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 209348 210190 . + . ID=Phyra82086;Parent=Phyra82086;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 209348 210190 . + 0 ID=Phyra82086;Parent=Phyra82086;rank=1 scaffold_67 . exon 209348 210190 . + . ID=Phyra82086.1;Parent=Phyra82086;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 210339 211958 . - . ID=Phyra82087;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000062;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 210339 211958 . - . ID=Phyra82087;Parent=Phyra82087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 210339 210702 . - 0 ID=Phyra82087;Parent=Phyra82087;rank=2 scaffold_67 . exon 210339 210702 . - . ID=Phyra82087.2;Parent=Phyra82087;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 211603 211958 . - 0 ID=Phyra82087;Parent=Phyra82087;rank=1 scaffold_67 . exon 211603 211958 . - . ID=Phyra82087.1;Parent=Phyra82087;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 ensembl protein_coding_gene 214557 214958 . - . ID=Phyra82088;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000063;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 214557 214958 . - . ID=Phyra82088;Parent=Phyra82088;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 214557 214958 . - 0 ID=Phyra82088;Parent=Phyra82088;rank=1 scaffold_67 . exon 214557 214958 . - . ID=Phyra82088.1;Parent=Phyra82088;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 216130 216512 . + . ID=Phyra82089;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000064;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 216130 216512 . + . ID=Phyra82089;Parent=Phyra82089;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 216130 216441 . + 0 ID=Phyra82089;Parent=Phyra82089;rank=1 scaffold_67 . exon 216130 216441 . + . ID=Phyra82089.1;Parent=Phyra82089;constitutive=1;rank=1 scaffold_67 . CDS 216471 216512 . + 0 ID=Phyra82089;Parent=Phyra82089;rank=2 scaffold_67 . exon 216471 216512 . + . ID=Phyra82089.2;Parent=Phyra82089;constitutive=1;rank=2 scaffold_67 . biological_region 221658 221661 0.999 - . logic_name=eponine scaffold_67 . biological_region 221687 221691 0.999 + . logic_name=eponine scaffold_67 . biological_region 223859 223861 0.999 - . logic_name=eponine scaffold_67 ensembl protein_coding_gene 222063 222503 . + . ID=Phyra52250;biotype=protein_coding;external_name=gwEuk.67.5.1;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 222063 222503 . + . ID=Phyra52250;Parent=Phyra52250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 222063 222503 . + 0 ID=Phyra52250;Parent=Phyra52250;rank=1 scaffold_67 . exon 222063 222503 . + . ID=Phyra52250.1;Parent=Phyra52250;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 220024 221772 . - . ID=Phyra82090;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000065;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 220024 221772 . - . ID=Phyra82090;Parent=Phyra82090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 220024 220428 . - 0 ID=Phyra82090;Parent=Phyra82090;rank=2 scaffold_67 . exon 220024 220428 . - . ID=Phyra82090.2;Parent=Phyra82090;constitutive=1;rank=2 scaffold_67 . CDS 220618 221772 . - 0 ID=Phyra82090;Parent=Phyra82090;rank=1 scaffold_67 . exon 220618 221772 . - . ID=Phyra82090.1;Parent=Phyra82090;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 222739 228810 . - . ID=Phyra82092;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000067;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 222739 228810 . - . ID=Phyra82092;Parent=Phyra82092;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 222739 228810 . - 0 ID=Phyra82092;Parent=Phyra82092;rank=1 scaffold_67 . exon 222739 228810 . - . ID=Phyra82092.1;Parent=Phyra82092;constitutive=1;rank=1 scaffold_67 . repeat_region 229983 230026 . ? . description=trf scaffold_67 . repeat_region 230406 230456 . ? . description=trf scaffold_67 . repeat_region 231386 231415 . ? . description=trf scaffold_67 ensembl protein_coding_gene 236320 237416 . + . ID=Phyra82094;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000069;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 236320 237416 . + . ID=Phyra82094;Parent=Phyra82094;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 236320 237271 . + 0 ID=Phyra82094;Parent=Phyra82094;rank=1 scaffold_67 . exon 236320 237271 . + . ID=Phyra82094.1;Parent=Phyra82094;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . CDS 237293 237350 . + 0 ID=Phyra82094;Parent=Phyra82094;rank=2 scaffold_67 . exon 237293 237350 . + . ID=Phyra82094.2;Parent=Phyra82094;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_67 . CDS 237401 237416 . + 0 ID=Phyra82094;Parent=Phyra82094;rank=3 scaffold_67 . exon 237401 237416 . + . ID=Phyra82094.3;Parent=Phyra82094;constitutive=1;ensembl_phase=2;rank=3 scaffold_67 ensembl protein_coding_gene 229802 232638 . + . ID=Phyra96230;biotype=protein_coding;external_name=C_scaffold_67000032;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 229802 232638 . + . ID=Phyra96230;Parent=Phyra96230;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 229802 230043 . + 0 ID=Phyra96230;Parent=Phyra96230;rank=1 scaffold_67 . exon 229802 230043 . + . ID=Phyra96230.1;Parent=Phyra96230;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . CDS 230098 230622 . + 0 ID=Phyra96230;Parent=Phyra96230;rank=2 scaffold_67 . exon 230098 230622 . + . ID=Phyra96230.2;Parent=Phyra96230;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_67 . CDS 230668 231087 . + 0 ID=Phyra96230;Parent=Phyra96230;rank=3 scaffold_67 . exon 230668 231087 . + . ID=Phyra96230.3;Parent=Phyra96230;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_67 . CDS 231210 231369 . + 0 ID=Phyra96230;Parent=Phyra96230;rank=4 scaffold_67 . exon 231210 231369 . + . ID=Phyra96230.4;Parent=Phyra96230;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 . CDS 231444 231503 . + 0 ID=Phyra96230;Parent=Phyra96230;rank=5 scaffold_67 . exon 231444 231503 . + . ID=Phyra96230.5;Parent=Phyra96230;constitutive=1;rank=5 scaffold_67 . CDS 232078 232638 . + 0 ID=Phyra96230;Parent=Phyra96230;rank=6 scaffold_67 . exon 232078 232638 . + . ID=Phyra96230.6;Parent=Phyra96230;constitutive=1;rank=6 scaffold_67 ensembl protein_coding_gene 232848 234318 . - . ID=Phyra96231;biotype=protein_coding;external_name=C_scaffold_67000033;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 232848 234318 . - . ID=Phyra96231;Parent=Phyra96231;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 232848 233256 . - 0 ID=Phyra96231;Parent=Phyra96231;rank=3 scaffold_67 . exon 232848 233256 . - . ID=Phyra96231.3;Parent=Phyra96231;constitutive=1;ensembl_phase=2;rank=3 scaffold_67 . CDS 233737 233955 . - 0 ID=Phyra96231;Parent=Phyra96231;rank=2 scaffold_67 . exon 233737 233955 . - . ID=Phyra96231.2;Parent=Phyra96231;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_67 . CDS 234191 234318 . - 0 ID=Phyra96231;Parent=Phyra96231;rank=1 scaffold_67 . exon 234191 234318 . - . ID=Phyra96231.1;Parent=Phyra96231;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . biological_region 240836 240839 0.999 - . logic_name=eponine scaffold_67 . biological_region 240927 240929 0.999 - . logic_name=eponine scaffold_67 . biological_region 241262 241268 0.999 + . logic_name=eponine scaffold_67 . biological_region 241294 241296 0.999 - . logic_name=eponine scaffold_67 . repeat_region 241495 241591 . + . description=(CAG)n scaffold_67 . repeat_region 241500 241592 . ? . description=dust scaffold_67 . biological_region 242061 242062 0.999 + . logic_name=eponine scaffold_67 . repeat_region 242869 242909 . ? . description=dust scaffold_67 . repeat_region 246262 246340 . + . description=(CTG)n scaffold_67 . repeat_region 246281 246337 . ? . description=dust scaffold_67 . biological_region 246595 246597 0.999 - . logic_name=eponine scaffold_67 . repeat_region 246679 246700 . ? . description=dust scaffold_67 . biological_region 246939 246945 0.999 + . logic_name=eponine scaffold_67 . biological_region 246971 246973 0.999 - . logic_name=eponine scaffold_67 . repeat_region 247172 247268 . + . description=(CAG)n scaffold_67 . repeat_region 247176 247249 . ? . description=dust scaffold_67 ensembl protein_coding_gene 238516 239121 . + . ID=Phyra71993;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_67000006;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 238516 239121 . + . ID=Phyra71993;Parent=Phyra71993;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 238516 239121 . + 0 ID=Phyra71993;Parent=Phyra71993;rank=1 scaffold_67 . exon 238516 239121 . + . ID=Phyra71993.1;Parent=Phyra71993;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 240530 241255 . - . ID=Phyra82096;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000071;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 240530 241255 . - . ID=Phyra82096;Parent=Phyra82096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 240530 241255 . - 0 ID=Phyra82096;Parent=Phyra82096;rank=1 scaffold_67 . exon 240530 241255 . - . ID=Phyra82096.1;Parent=Phyra82096;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 242036 243773 . + . ID=Phyra82097;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000072;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 242036 243773 . + . ID=Phyra82097;Parent=Phyra82097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 242036 243253 . + 0 ID=Phyra82097;Parent=Phyra82097;rank=1 scaffold_67 . exon 242036 243253 . + . ID=Phyra82097.1;Parent=Phyra82097;constitutive=1;rank=1 scaffold_67 . CDS 243317 243568 . + 0 ID=Phyra82097;Parent=Phyra82097;rank=2 scaffold_67 . exon 243317 243568 . + . ID=Phyra82097.2;Parent=Phyra82097;constitutive=1;rank=2 scaffold_67 . CDS 243756 243773 . + 0 ID=Phyra82097;Parent=Phyra82097;rank=3 scaffold_67 . exon 243756 243773 . + . ID=Phyra82097.3;Parent=Phyra82097;constitutive=1;rank=3 scaffold_67 ensembl protein_coding_gene 246168 246932 . - . ID=Phyra82098;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000073;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 246168 246932 . - . ID=Phyra82098;Parent=Phyra82098;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 246168 246932 . - 0 ID=Phyra82098;Parent=Phyra82098;rank=1 scaffold_67 . exon 246168 246932 . - . ID=Phyra82098.1;Parent=Phyra82098;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 255989 258461 . + . ID=Phyra82103;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000078;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 255989 258461 . + . ID=Phyra82103;Parent=Phyra82103;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 255989 256019 . + 0 ID=Phyra82103;Parent=Phyra82103;rank=1 scaffold_67 . exon 255989 256019 . + . ID=Phyra82103.1;Parent=Phyra82103;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . CDS 256142 257491 . + 0 ID=Phyra82103;Parent=Phyra82103;rank=2 scaffold_67 . exon 256142 257491 . + . ID=Phyra82103.2;Parent=Phyra82103;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_67 . CDS 257552 257808 . + 0 ID=Phyra82103;Parent=Phyra82103;rank=3 scaffold_67 . CDS 257873 258183 . + 0 ID=Phyra82103;Parent=Phyra82103;rank=4 scaffold_67 . CDS 258294 258359 . + 0 ID=Phyra82103;Parent=Phyra82103;rank=5 scaffold_67 . CDS 258422 258461 . + 0 ID=Phyra82103;Parent=Phyra82103;rank=6 scaffold_67 ensembl protein_coding_gene 248465 255785 . - . ID=Phyra96233;biotype=protein_coding;external_name=C_scaffold_67000035;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 248465 255785 . - . ID=Phyra96233;Parent=Phyra96233;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 248465 248579 . - 0 ID=Phyra96233;Parent=Phyra96233;rank=10 scaffold_67 . exon 248465 248579 . - . ID=Phyra96233.10;Parent=Phyra96233;constitutive=1;ensembl_phase=2;rank=10 scaffold_67 . CDS 248659 250849 . - 0 ID=Phyra96233;Parent=Phyra96233;rank=9 scaffold_67 . exon 248659 250849 . - . ID=Phyra96233.9;Parent=Phyra96233;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_67 . CDS 251054 251522 . - 0 ID=Phyra96233;Parent=Phyra96233;rank=8 scaffold_67 . exon 251054 251522 . - . ID=Phyra96233.8;Parent=Phyra96233;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_67 . CDS 251599 251691 . - 0 ID=Phyra96233;Parent=Phyra96233;rank=7 scaffold_67 . exon 251599 251691 . - . ID=Phyra96233.7;Parent=Phyra96233;constitutive=1;rank=7 scaffold_67 . CDS 251756 252797 . - 0 ID=Phyra96233;Parent=Phyra96233;rank=6 scaffold_67 . exon 251756 252797 . - . ID=Phyra96233.6;Parent=Phyra96233;constitutive=1;ensembl_phase=2;rank=6 scaffold_67 . CDS 253161 254389 . - 0 ID=Phyra96233;Parent=Phyra96233;rank=5 scaffold_67 . exon 253161 254389 . - . ID=Phyra96233.5;Parent=Phyra96233;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_67 . CDS 254474 254483 . - 0 ID=Phyra96233;Parent=Phyra96233;rank=4 scaffold_67 . exon 254474 254483 . - . ID=Phyra96233.4;Parent=Phyra96233;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 . CDS 254712 254829 . - 0 ID=Phyra96233;Parent=Phyra96233;rank=3 scaffold_67 . exon 254712 254829 . - . ID=Phyra96233.3;Parent=Phyra96233;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_67 . CDS 255007 255522 . - 0 ID=Phyra96233;Parent=Phyra96233;rank=2 scaffold_67 . exon 255007 255522 . - . ID=Phyra96233.2;Parent=Phyra96233;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_67 . CDS 255587 255785 . - 0 ID=Phyra96233;Parent=Phyra96233;rank=1 scaffold_67 . exon 255587 255785 . - . ID=Phyra96233.1;Parent=Phyra96233;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . biological_region 258533 258536 0.999 + . logic_name=eponine scaffold_67 . biological_region 260967 260970 0.999 + . logic_name=eponine scaffold_67 . biological_region 261024 261029 0.999 - . logic_name=eponine scaffold_67 . biological_region 261476 261479 0.999 + . logic_name=eponine scaffold_67 . biological_region 261514 261516 0.999 - . logic_name=eponine scaffold_67 . biological_region 263606 263610 0.999 + . logic_name=eponine scaffold_67 . repeat_region 264717 264726 . ? . description=dust scaffold_67 . biological_region 267205 267209 0.999 - . logic_name=eponine scaffold_67 ensembl protein_coding_gene 264871 265572 . - . ID=Phyra52260;biotype=protein_coding;external_name=gwEuk.67.15.1;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 264871 265572 . - . ID=Phyra52260;Parent=Phyra52260;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 264871 265572 . - 0 ID=Phyra52260;Parent=Phyra52260;rank=1 scaffold_67 . exon 264871 265572 . - . ID=Phyra52260.1;Parent=Phyra52260;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 266682 267850 . - . ID=Phyra52262;biotype=protein_coding;external_name=gwEuk.67.17.1;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 266682 267850 . - . ID=Phyra52262;Parent=Phyra52262;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 266682 266740 . - 0 ID=Phyra52262;Parent=Phyra52262;rank=4 scaffold_67 . exon 266682 266740 . - . ID=Phyra52262.4;Parent=Phyra52262;constitutive=1;ensembl_phase=1;rank=4 scaffold_67 . CDS 266819 267256 . - 0 ID=Phyra52262;Parent=Phyra52262;rank=3 scaffold_67 . exon 266819 267256 . - . ID=Phyra52262.3;Parent=Phyra52262;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_67 . CDS 267337 267737 . - 0 ID=Phyra52262;Parent=Phyra52262;rank=2 scaffold_67 . CDS 267789 267850 . - 0 ID=Phyra52262;Parent=Phyra52262;rank=1 scaffold_67 . exon 257552 257808 . + . ID=Phyra82103.3;Parent=Phyra82103;constitutive=1;ensembl_phase=1;rank=3 scaffold_67 . exon 257873 258183 . + . ID=Phyra82103.4;Parent=Phyra82103;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_67 . exon 258294 258359 . + . ID=Phyra82103.5;Parent=Phyra82103;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_67 . exon 258422 258461 . + . ID=Phyra82103.6;Parent=Phyra82103;constitutive=1;ensembl_phase=2;rank=6 scaffold_67 ensembl protein_coding_gene 261291 263216 . + . ID=Phyra82104;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000079;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 261291 263216 . + . ID=Phyra82104;Parent=Phyra82104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 261291 263216 . + 0 ID=Phyra82104;Parent=Phyra82104;rank=1 scaffold_67 . exon 261291 263216 . + . ID=Phyra82104.1;Parent=Phyra82104;constitutive=1;rank=1 scaffold_67 . exon 267337 267737 . - . ID=Phyra52262.2;Parent=Phyra52262;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_67 . exon 267789 267850 . - . ID=Phyra52262.1;Parent=Phyra52262;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 ensembl protein_coding_gene 268167 269085 . + . ID=Phyra82107;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000082;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 268167 269085 . + . ID=Phyra82107;Parent=Phyra82107;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 268167 268669 . + 0 ID=Phyra82107;Parent=Phyra82107;rank=1 scaffold_67 . exon 268167 268669 . + . ID=Phyra82107.1;Parent=Phyra82107;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . CDS 268740 268811 . + 0 ID=Phyra82107;Parent=Phyra82107;rank=2 scaffold_67 . exon 268740 268811 . + . ID=Phyra82107.2;Parent=Phyra82107;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_67 . CDS 268895 269002 . + 0 ID=Phyra82107;Parent=Phyra82107;rank=3 scaffold_67 . exon 268895 269002 . + . ID=Phyra82107.3;Parent=Phyra82107;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_67 . CDS 269070 269085 . + 0 ID=Phyra82107;Parent=Phyra82107;rank=4 scaffold_67 . exon 269070 269085 . + . ID=Phyra82107.4;Parent=Phyra82107;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 ensembl protein_coding_gene 270020 271155 . - . ID=Phyra82108;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000083;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 270020 271155 . - . ID=Phyra82108;Parent=Phyra82108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 270020 270127 . - 0 ID=Phyra82108;Parent=Phyra82108;rank=2 scaffold_67 . exon 270020 270127 . - . ID=Phyra82108.2;Parent=Phyra82108;constitutive=1;rank=2 scaffold_67 . CDS 270181 271155 . - 0 ID=Phyra82108;Parent=Phyra82108;rank=1 scaffold_67 . exon 270181 271155 . - . ID=Phyra82108.1;Parent=Phyra82108;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 275366 281355 . - . ID=Phyra96236;biotype=protein_coding;external_name=C_scaffold_67000038;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 275366 281355 . - . ID=Phyra96236;Parent=Phyra96236;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 275366 275473 . - 0 ID=Phyra96236;Parent=Phyra96236;rank=13 scaffold_67 . exon 275366 275473 . - . ID=Phyra96236.13;Parent=Phyra96236;constitutive=1;rank=13 scaffold_67 . CDS 275527 276440 . - 0 ID=Phyra96236;Parent=Phyra96236;rank=12 scaffold_67 . exon 275527 276440 . - . ID=Phyra96236.12;Parent=Phyra96236;constitutive=1;ensembl_phase=1;rank=12 scaffold_67 . CDS 276993 277133 . - 0 ID=Phyra96236;Parent=Phyra96236;rank=11 scaffold_67 . exon 276993 277133 . - . ID=Phyra96236.11;Parent=Phyra96236;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_67 . CDS 277218 277351 . - 0 ID=Phyra96236;Parent=Phyra96236;rank=10 scaffold_67 . CDS 277823 277849 . - 0 ID=Phyra96236;Parent=Phyra96236;rank=9 scaffold_67 . CDS 278156 278327 . - 0 ID=Phyra96236;Parent=Phyra96236;rank=8 scaffold_67 . CDS 278598 278826 . - 0 ID=Phyra96236;Parent=Phyra96236;rank=7 scaffold_67 . CDS 279355 279582 . - 0 ID=Phyra96236;Parent=Phyra96236;rank=6 scaffold_67 . CDS 279634 279817 . - 0 ID=Phyra96236;Parent=Phyra96236;rank=5 scaffold_67 . CDS 279923 280057 . - 0 ID=Phyra96236;Parent=Phyra96236;rank=4 scaffold_67 . CDS 280112 280260 . - 0 ID=Phyra96236;Parent=Phyra96236;rank=3 scaffold_67 . CDS 280978 281160 . - 0 ID=Phyra96236;Parent=Phyra96236;rank=2 scaffold_67 . CDS 281215 281355 . - 0 ID=Phyra96236;Parent=Phyra96236;rank=1 scaffold_67 . repeat_region 280190 280197 . ? . description=dust scaffold_67 . repeat_region 284433 284766 . ? . description=dust scaffold_67 ensembl protein_coding_gene 283347 283661 . - . ID=Phyra82110;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_67000085;logic_name=jgi_phyra1 scaffold_67 ensembl transcript 283347 283661 . - . ID=Phyra82110;Parent=Phyra82110;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_67 . CDS 283347 283661 . - 0 ID=Phyra82110;Parent=Phyra82110;rank=1 scaffold_67 . exon 283347 283661 . - . ID=Phyra82110.1;Parent=Phyra82110;constitutive=1;rank=1 scaffold_67 . exon 277218 277351 . - . ID=Phyra96236.10;Parent=Phyra96236;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_67 . exon 277823 277849 . - . ID=Phyra96236.9;Parent=Phyra96236;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_67 . exon 278156 278327 . - . ID=Phyra96236.8;Parent=Phyra96236;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_67 . exon 278598 278826 . - . ID=Phyra96236.7;Parent=Phyra96236;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_67 . exon 279355 279582 . - . ID=Phyra96236.6;Parent=Phyra96236;constitutive=1;rank=6 scaffold_67 . exon 279634 279817 . - . ID=Phyra96236.5;Parent=Phyra96236;constitutive=1;ensembl_phase=2;rank=5 scaffold_67 . exon 279923 280057 . - . ID=Phyra96236.4;Parent=Phyra96236;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_67 . exon 280112 280260 . - . ID=Phyra96236.3;Parent=Phyra96236;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_67 . exon 280978 281160 . - . ID=Phyra96236.2;Parent=Phyra96236;constitutive=1;rank=2 scaffold_67 . exon 281215 281355 . - . ID=Phyra96236.1;Parent=Phyra96236;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_68 1 293575 scaffold_68 . repeat_region 1230 12427 . ? . description=dust scaffold_68 . repeat_region 15038 30426 . ? . description=dust scaffold_68 . repeat_region 30969 31196 . + . description=GypsyPi-1c_I-int scaffold_68 . biological_region 33306 33308 0.999 - . logic_name=eponine scaffold_68 . biological_region 33327 33327 0.999 - . logic_name=eponine scaffold_68 . biological_region 33344 33349 0.999 - . logic_name=eponine scaffold_68 . biological_region 33363 33367 0.999 + . logic_name=eponine scaffold_68 ensembl protein_coding_gene 33154 35741 . + . ID=Phyra82111;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000001;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 33154 35741 . + . ID=Phyra82111;Parent=Phyra82111;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 33154 34055 . + 0 ID=Phyra82111;Parent=Phyra82111;rank=1 scaffold_68 . exon 33154 34055 . + . ID=Phyra82111.1;Parent=Phyra82111;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 . CDS 34100 34155 . + 0 ID=Phyra82111;Parent=Phyra82111;rank=2 scaffold_68 . exon 34100 34155 . + . ID=Phyra82111.2;Parent=Phyra82111;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 34451 34564 . + 0 ID=Phyra82111;Parent=Phyra82111;rank=3 scaffold_68 . exon 34451 34564 . + . ID=Phyra82111.3;Parent=Phyra82111;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_68 . CDS 34640 35685 . + 0 ID=Phyra82111;Parent=Phyra82111;rank=4 scaffold_68 . exon 34640 35685 . + . ID=Phyra82111.4;Parent=Phyra82111;constitutive=1;ensembl_phase=1;rank=4 scaffold_68 . CDS 35733 35741 . + 0 ID=Phyra82111;Parent=Phyra82111;rank=5 scaffold_68 . exon 35733 35741 . + . ID=Phyra82111.5;Parent=Phyra82111;constitutive=1;rank=5 scaffold_68 ensembl protein_coding_gene 36132 37079 . - . ID=Phyra82112;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000002;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 36132 37079 . - . ID=Phyra82112;Parent=Phyra82112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 36132 37079 . - 0 ID=Phyra82112;Parent=Phyra82112;rank=1 scaffold_68 . exon 36132 37079 . - . ID=Phyra82112.1;Parent=Phyra82112;constitutive=1;rank=1 scaffold_68 . repeat_region 39926 39946 . ? . description=trf scaffold_68 . repeat_region 39926 39946 . ? . description=dust scaffold_68 . repeat_region 39959 40045 . ? . description=trf scaffold_68 . repeat_region 39963 40063 . ? . description=trf scaffold_68 . repeat_region 45313 45354 . ? . description=trf scaffold_68 . repeat_region 48143 48193 . ? . description=trf scaffold_68 . repeat_region 48158 48193 . ? . description=trf scaffold_68 . repeat_region 48287 48324 . ? . description=trf scaffold_68 ensembl protein_coding_gene 39545 40744 . - . ID=Phyra82113;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000003;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 39545 40744 . - . ID=Phyra82113;Parent=Phyra82113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 39545 40744 . - 0 ID=Phyra82113;Parent=Phyra82113;rank=1 scaffold_68 . exon 39545 40744 . - . ID=Phyra82113.1;Parent=Phyra82113;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 41221 43722 . + . ID=Phyra82114;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000004;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 41221 43722 . + . ID=Phyra82114;Parent=Phyra82114;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 41221 43722 . + 0 ID=Phyra82114;Parent=Phyra82114;rank=1 scaffold_68 . exon 41221 43722 . + . ID=Phyra82114.1;Parent=Phyra82114;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 43813 45588 . - . ID=Phyra82115;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000005;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 43813 45588 . - . ID=Phyra82115;Parent=Phyra82115;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 43813 45588 . - 0 ID=Phyra82115;Parent=Phyra82115;rank=1 scaffold_68 . exon 43813 45588 . - . ID=Phyra82115.1;Parent=Phyra82115;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 47135 51388 . + . ID=Phyra96237;biotype=protein_coding;external_name=C_scaffold_68000001;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 47135 51388 . + . ID=Phyra96237;Parent=Phyra96237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 47135 47380 . + 0 ID=Phyra96237;Parent=Phyra96237;rank=1 scaffold_68 . exon 47135 47380 . + . ID=Phyra96237.1;Parent=Phyra96237;constitutive=1;rank=1 scaffold_68 . CDS 47438 47662 . + 0 ID=Phyra96237;Parent=Phyra96237;rank=2 scaffold_68 . exon 47438 47662 . + . ID=Phyra96237.2;Parent=Phyra96237;constitutive=1;rank=2 scaffold_68 . CDS 47729 48267 . + 0 ID=Phyra96237;Parent=Phyra96237;rank=3 scaffold_68 . exon 47729 48267 . + . ID=Phyra96237.3;Parent=Phyra96237;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_68 . CDS 48358 48450 . + 0 ID=Phyra96237;Parent=Phyra96237;rank=4 scaffold_68 . exon 48358 48450 . + . ID=Phyra96237.4;Parent=Phyra96237;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_68 . CDS 48806 49115 . + 0 ID=Phyra96237;Parent=Phyra96237;rank=5 scaffold_68 . exon 48806 49115 . + . ID=Phyra96237.5;Parent=Phyra96237;constitutive=1;ensembl_phase=2;rank=5 scaffold_68 . CDS 49189 49411 . + 0 ID=Phyra96237;Parent=Phyra96237;rank=6 scaffold_68 . CDS 49502 49678 . + 0 ID=Phyra96237;Parent=Phyra96237;rank=7 scaffold_68 . CDS 49706 49915 . + 0 ID=Phyra96237;Parent=Phyra96237;rank=8 scaffold_68 . CDS 49949 50011 . + 0 ID=Phyra96237;Parent=Phyra96237;rank=9 scaffold_68 . CDS 50088 50306 . + 0 ID=Phyra96237;Parent=Phyra96237;rank=10 scaffold_68 . CDS 50367 50554 . + 0 ID=Phyra96237;Parent=Phyra96237;rank=11 scaffold_68 . CDS 50681 51160 . + 0 ID=Phyra96237;Parent=Phyra96237;rank=12 scaffold_68 . CDS 51230 51388 . + 0 ID=Phyra96237;Parent=Phyra96237;rank=13 scaffold_68 . biological_region 52987 52990 0.999 + . logic_name=eponine scaffold_68 ensembl protein_coding_gene 57226 58338 . - . ID=Phyra82119;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000009;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 57226 58338 . - . ID=Phyra82119;Parent=Phyra82119;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 57226 58338 . - 0 ID=Phyra82119;Parent=Phyra82119;rank=1 scaffold_68 . exon 57226 58338 . - . ID=Phyra82119.1;Parent=Phyra82119;constitutive=1;rank=1 scaffold_68 . exon 49189 49411 . + . ID=Phyra96237.6;Parent=Phyra96237;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_68 . exon 49502 49678 . + . ID=Phyra96237.7;Parent=Phyra96237;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_68 . exon 49706 49915 . + . ID=Phyra96237.8;Parent=Phyra96237;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_68 . exon 49949 50011 . + . ID=Phyra96237.9;Parent=Phyra96237;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_68 . exon 50088 50306 . + . ID=Phyra96237.10;Parent=Phyra96237;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_68 . exon 50367 50554 . + . ID=Phyra96237.11;Parent=Phyra96237;constitutive=1;ensembl_phase=1;rank=11 scaffold_68 . exon 50681 51160 . + . ID=Phyra96237.12;Parent=Phyra96237;constitutive=1;rank=12 scaffold_68 . exon 51230 51388 . + . ID=Phyra96237.13;Parent=Phyra96237;constitutive=1;rank=13 scaffold_68 ensembl protein_coding_gene 51551 56318 . - . ID=Phyra96240;biotype=protein_coding;external_name=C_scaffold_68000004;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 51551 56318 . - . ID=Phyra96240;Parent=Phyra96240;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 51551 51730 . - 0 ID=Phyra96240;Parent=Phyra96240;rank=9 scaffold_68 . exon 51551 51730 . - . ID=Phyra96240.9;Parent=Phyra96240;constitutive=1;rank=9 scaffold_68 . CDS 51758 52100 . - 0 ID=Phyra96240;Parent=Phyra96240;rank=8 scaffold_68 . exon 51758 52100 . - . ID=Phyra96240.8;Parent=Phyra96240;constitutive=1;ensembl_phase=2;rank=8 scaffold_68 . CDS 52131 53874 . - 0 ID=Phyra96240;Parent=Phyra96240;rank=7 scaffold_68 . exon 52131 53874 . - . ID=Phyra96240.7;Parent=Phyra96240;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_68 . CDS 53950 54204 . - 0 ID=Phyra96240;Parent=Phyra96240;rank=6 scaffold_68 . exon 53950 54204 . - . ID=Phyra96240.6;Parent=Phyra96240;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_68 . CDS 54226 54321 . - 0 ID=Phyra96240;Parent=Phyra96240;rank=5 scaffold_68 . exon 54226 54321 . - . ID=Phyra96240.5;Parent=Phyra96240;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_68 . CDS 54439 54806 . - 0 ID=Phyra96240;Parent=Phyra96240;rank=4 scaffold_68 . exon 54439 54806 . - . ID=Phyra96240.4;Parent=Phyra96240;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_68 . CDS 55159 55644 . - 0 ID=Phyra96240;Parent=Phyra96240;rank=3 scaffold_68 . exon 55159 55644 . - . ID=Phyra96240.3;Parent=Phyra96240;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_68 . CDS 55729 55890 . - 0 ID=Phyra96240;Parent=Phyra96240;rank=2 scaffold_68 . exon 55729 55890 . - . ID=Phyra96240.2;Parent=Phyra96240;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_68 . CDS 55912 56318 . - 0 ID=Phyra96240;Parent=Phyra96240;rank=1 scaffold_68 . exon 55912 56318 . - . ID=Phyra96240.1;Parent=Phyra96240;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 . repeat_region 61764 61818 . ? . description=trf scaffold_68 . repeat_region 63236 66260 . ? . description=dust scaffold_68 . repeat_region 67549 69553 . ? . description=dust scaffold_68 . repeat_region 79604 79678 . ? . description=dust scaffold_68 . repeat_region 82814 82995 . ? . description=trf scaffold_68 . repeat_region 82814 83014 . ? . description=trf scaffold_68 . repeat_region 84706 84765 . ? . description=trf scaffold_68 . repeat_region 84720 84761 . ? . description=trf scaffold_68 . repeat_region 84766 84812 . ? . description=trf scaffold_68 . biological_region 85257 85258 0.999 - . logic_name=eponine scaffold_68 . repeat_region 86175 86272 . ? . description=trf scaffold_68 ensembl protein_coding_gene 79258 80721 . + . ID=Phyra82120;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000010;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 79258 80721 . + . ID=Phyra82120;Parent=Phyra82120;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 79258 79446 . + 0 ID=Phyra82120;Parent=Phyra82120;rank=1 scaffold_68 . exon 79258 79446 . + . ID=Phyra82120.1;Parent=Phyra82120;constitutive=1;rank=1 scaffold_68 . CDS 79764 80306 . + 0 ID=Phyra82120;Parent=Phyra82120;rank=2 scaffold_68 . exon 79764 80306 . + . ID=Phyra82120.2;Parent=Phyra82120;constitutive=1;rank=2 scaffold_68 . CDS 80370 80591 . + 0 ID=Phyra82120;Parent=Phyra82120;rank=3 scaffold_68 . exon 80370 80591 . + . ID=Phyra82120.3;Parent=Phyra82120;constitutive=1;rank=3 scaffold_68 . CDS 80620 80721 . + 0 ID=Phyra82120;Parent=Phyra82120;rank=4 scaffold_68 . exon 80620 80721 . + . ID=Phyra82120.4;Parent=Phyra82120;constitutive=1;rank=4 scaffold_68 ensembl protein_coding_gene 82130 83137 . + . ID=Phyra82121;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000011;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 82130 83137 . + . ID=Phyra82121;Parent=Phyra82121;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 82130 83137 . + 0 ID=Phyra82121;Parent=Phyra82121;rank=1 scaffold_68 . exon 82130 83137 . + . ID=Phyra82121.1;Parent=Phyra82121;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 83995 84918 . + . ID=Phyra82122;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000012;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 83995 84918 . + . ID=Phyra82122;Parent=Phyra82122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 83995 84918 . + 0 ID=Phyra82122;Parent=Phyra82122;rank=1 scaffold_68 . exon 83995 84918 . + . ID=Phyra82122.1;Parent=Phyra82122;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 85570 86394 . + . ID=Phyra82123;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000013;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 85570 86394 . + . ID=Phyra82123;Parent=Phyra82123;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 85570 86394 . + 0 ID=Phyra82123;Parent=Phyra82123;rank=1 scaffold_68 . exon 85570 86394 . + . ID=Phyra82123.1;Parent=Phyra82123;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 87041 89041 . + . ID=Phyra82124;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000014;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 87041 89041 . + . ID=Phyra82124;Parent=Phyra82124;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 87041 89041 . + 0 ID=Phyra82124;Parent=Phyra82124;rank=1 scaffold_68 . exon 87041 89041 . + . ID=Phyra82124.1;Parent=Phyra82124;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 96839 98422 . - . ID=Phyra71995;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_68000001;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 96839 98422 . - . ID=Phyra71995;Parent=Phyra71995;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 96839 98422 . - 0 ID=Phyra71995;Parent=Phyra71995;rank=1 scaffold_68 . exon 96839 98422 . - . ID=Phyra71995.1;Parent=Phyra71995;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 89204 90131 . - . ID=Phyra82125;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000015;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 89204 90131 . - . ID=Phyra82125;Parent=Phyra82125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 89204 89747 . - 0 ID=Phyra82125;Parent=Phyra82125;rank=2 scaffold_68 . exon 89204 89747 . - . ID=Phyra82125.2;Parent=Phyra82125;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 89869 90131 . - 0 ID=Phyra82125;Parent=Phyra82125;rank=1 scaffold_68 . exon 89869 90131 . - . ID=Phyra82125.1;Parent=Phyra82125;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 ensembl protein_coding_gene 91177 96598 . + . ID=Phyra82126;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000016;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 91177 96598 . + . ID=Phyra82126;Parent=Phyra82126;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 91177 92436 . + 0 ID=Phyra82126;Parent=Phyra82126;rank=1 scaffold_68 . exon 91177 92436 . + . ID=Phyra82126.1;Parent=Phyra82126;constitutive=1;rank=1 scaffold_68 . CDS 92507 92577 . + 0 ID=Phyra82126;Parent=Phyra82126;rank=2 scaffold_68 . exon 92507 92577 . + . ID=Phyra82126.2;Parent=Phyra82126;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_68 . CDS 93254 93385 . + 0 ID=Phyra82126;Parent=Phyra82126;rank=3 scaffold_68 . exon 93254 93385 . + . ID=Phyra82126.3;Parent=Phyra82126;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_68 . CDS 93508 94047 . + 0 ID=Phyra82126;Parent=Phyra82126;rank=4 scaffold_68 . exon 93508 94047 . + . ID=Phyra82126.4;Parent=Phyra82126;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_68 . CDS 94145 94148 . + 0 ID=Phyra82126;Parent=Phyra82126;rank=5 scaffold_68 . exon 94145 94148 . + . ID=Phyra82126.5;Parent=Phyra82126;constitutive=1;ensembl_phase=2;rank=5 scaffold_68 . CDS 94398 94425 . + 0 ID=Phyra82126;Parent=Phyra82126;rank=6 scaffold_68 . exon 94398 94425 . + . ID=Phyra82126.6;Parent=Phyra82126;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_68 . CDS 94504 94629 . + 0 ID=Phyra82126;Parent=Phyra82126;rank=7 scaffold_68 . exon 94504 94629 . + . ID=Phyra82126.7;Parent=Phyra82126;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_68 . CDS 94713 96598 . + 0 ID=Phyra82126;Parent=Phyra82126;rank=8 scaffold_68 . exon 94713 96598 . + . ID=Phyra82126.8;Parent=Phyra82126;constitutive=1;ensembl_phase=1;rank=8 scaffold_68 . biological_region 100187 100192 0.999 - . logic_name=eponine scaffold_68 . biological_region 100803 100809 0.999 + . logic_name=eponine scaffold_68 . biological_region 103752 103752 0.999 + . logic_name=eponine scaffold_68 . repeat_region 104672 104769 . ? . description=trf scaffold_68 . repeat_region 104675 104772 . ? . description=trf scaffold_68 . repeat_region 104952 105159 . ? . description=trf scaffold_68 . repeat_region 105206 105508 . ? . description=trf scaffold_68 . repeat_region 106352 106398 . ? . description=trf scaffold_68 . biological_region 106818 106824 0.999 + . logic_name=eponine scaffold_68 ensembl protein_coding_gene 100734 103320 . - . ID=Phyra82128;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000018;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 100734 103320 . - . ID=Phyra82128;Parent=Phyra82128;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 100734 101110 . - 0 ID=Phyra82128;Parent=Phyra82128;rank=5 scaffold_68 . exon 100734 101110 . - . ID=Phyra82128.5;Parent=Phyra82128;constitutive=1;ensembl_phase=1;rank=5 scaffold_68 . CDS 101186 101330 . - 0 ID=Phyra82128;Parent=Phyra82128;rank=4 scaffold_68 . exon 101186 101330 . - . ID=Phyra82128.4;Parent=Phyra82128;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_68 . CDS 101811 102975 . - 0 ID=Phyra82128;Parent=Phyra82128;rank=3 scaffold_68 . exon 101811 102975 . - . ID=Phyra82128.3;Parent=Phyra82128;constitutive=1;ensembl_phase=2;rank=3 scaffold_68 . CDS 103048 103151 . - 0 ID=Phyra82128;Parent=Phyra82128;rank=2 scaffold_68 . exon 103048 103151 . - . ID=Phyra82128.2;Parent=Phyra82128;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_68 . CDS 103240 103320 . - 0 ID=Phyra82128;Parent=Phyra82128;rank=1 scaffold_68 . exon 103240 103320 . - . ID=Phyra82128.1;Parent=Phyra82128;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 103562 105228 . - . ID=Phyra96244;biotype=protein_coding;external_name=C_scaffold_68000008;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 103562 105228 . - . ID=Phyra96244;Parent=Phyra96244;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 103562 103848 . - 0 ID=Phyra96244;Parent=Phyra96244;rank=3 scaffold_68 . exon 103562 103848 . - . ID=Phyra96244.3;Parent=Phyra96244;constitutive=1;ensembl_phase=1;rank=3 scaffold_68 . CDS 103876 104902 . - 0 ID=Phyra96244;Parent=Phyra96244;rank=2 scaffold_68 . exon 103876 104902 . - . ID=Phyra96244.2;Parent=Phyra96244;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_68 . CDS 105050 105226 . - 0 ID=Phyra96244;Parent=Phyra96244;rank=1 scaffold_68 . exon 105050 105228 . - . ID=Phyra96244.1;Parent=Phyra96244;constitutive=1;ensembl_phase=-1;rank=1 scaffold_68 . repeat_region 109580 109587 . ? . description=dust scaffold_68 . repeat_region 109821 109829 . ? . description=dust scaffold_68 . repeat_region 111448 111845 . ? . description=dust scaffold_68 . repeat_region 112688 112695 . ? . description=dust scaffold_68 ensembl protein_coding_gene 108196 109521 . + . ID=Phyra82130;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000020;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 108196 109521 . + . ID=Phyra82130;Parent=Phyra82130;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 108196 108264 . + 0 ID=Phyra82130;Parent=Phyra82130;rank=1 scaffold_68 . exon 108196 108264 . + . ID=Phyra82130.1;Parent=Phyra82130;constitutive=1;rank=1 scaffold_68 . CDS 108329 108664 . + 0 ID=Phyra82130;Parent=Phyra82130;rank=2 scaffold_68 . exon 108329 108664 . + . ID=Phyra82130.2;Parent=Phyra82130;constitutive=1;rank=2 scaffold_68 . CDS 108737 109242 . + 0 ID=Phyra82130;Parent=Phyra82130;rank=3 scaffold_68 . exon 108737 109242 . + . ID=Phyra82130.3;Parent=Phyra82130;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_68 . CDS 109305 109521 . + 0 ID=Phyra82130;Parent=Phyra82130;rank=4 scaffold_68 . exon 109305 109521 . + . ID=Phyra82130.4;Parent=Phyra82130;constitutive=1;ensembl_phase=2;rank=4 scaffold_68 ensembl protein_coding_gene 109674 111096 . + . ID=Phyra82131;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000021;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 109674 111096 . + . ID=Phyra82131;Parent=Phyra82131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 109674 109811 . + 0 ID=Phyra82131;Parent=Phyra82131;rank=1 scaffold_68 . exon 109674 109811 . + . ID=Phyra82131.1;Parent=Phyra82131;constitutive=1;rank=1 scaffold_68 . CDS 109888 110223 . + 0 ID=Phyra82131;Parent=Phyra82131;rank=2 scaffold_68 . exon 109888 110223 . + . ID=Phyra82131.2;Parent=Phyra82131;constitutive=1;rank=2 scaffold_68 . CDS 110297 110802 . + 0 ID=Phyra82131;Parent=Phyra82131;rank=3 scaffold_68 . exon 110297 110802 . + . ID=Phyra82131.3;Parent=Phyra82131;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_68 . CDS 110880 111096 . + 0 ID=Phyra82131;Parent=Phyra82131;rank=4 scaffold_68 . exon 110880 111096 . + . ID=Phyra82131.4;Parent=Phyra82131;constitutive=1;ensembl_phase=2;rank=4 scaffold_68 ensembl protein_coding_gene 112871 114037 . + . ID=Phyra82132;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000022;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 112871 114037 . + . ID=Phyra82132;Parent=Phyra82132;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 112871 114037 . + 0 ID=Phyra82132;Parent=Phyra82132;rank=1 scaffold_68 . exon 112871 114037 . + . ID=Phyra82132.1;Parent=Phyra82132;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 116182 117534 . - . ID=Phyra82133;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000023;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 116182 117534 . - . ID=Phyra82133;Parent=Phyra82133;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 116182 117534 . - 0 ID=Phyra82133;Parent=Phyra82133;rank=1 scaffold_68 . exon 116182 117534 . - . ID=Phyra82133.1;Parent=Phyra82133;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 118168 123755 . - . ID=Phyra82134;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000024;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 118168 123755 . - . ID=Phyra82134;Parent=Phyra82134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 118168 122426 . - 0 ID=Phyra82134;Parent=Phyra82134;rank=3 scaffold_68 . exon 118168 122426 . - . ID=Phyra82134.3;Parent=Phyra82134;constitutive=1;ensembl_phase=1;rank=3 scaffold_68 . CDS 122567 123624 . - 0 ID=Phyra82134;Parent=Phyra82134;rank=2 scaffold_68 . exon 122567 123624 . - . ID=Phyra82134.2;Parent=Phyra82134;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 123685 123755 . - 0 ID=Phyra82134;Parent=Phyra82134;rank=1 scaffold_68 . exon 123685 123755 . - . ID=Phyra82134.1;Parent=Phyra82134;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 ensembl protein_coding_gene 124232 128422 . + . ID=Phyra82135;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000025;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 124232 128422 . + . ID=Phyra82135;Parent=Phyra82135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 124232 128422 . + 0 ID=Phyra82135;Parent=Phyra82135;rank=1 scaffold_68 . exon 124232 128422 . + . ID=Phyra82135.1;Parent=Phyra82135;constitutive=1;rank=1 scaffold_68 . biological_region 130413 130414 0.999 - . logic_name=eponine scaffold_68 . biological_region 136562 136564 0.999 + . logic_name=eponine scaffold_68 ensembl protein_coding_gene 132911 134509 . - . ID=Phyra82136;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000026;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 132911 134509 . - . ID=Phyra82136;Parent=Phyra82136;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 132911 133011 . - 0 ID=Phyra82136;Parent=Phyra82136;rank=4 scaffold_68 . exon 132911 133011 . - . ID=Phyra82136.4;Parent=Phyra82136;constitutive=1;ensembl_phase=1;rank=4 scaffold_68 . CDS 133076 134186 . - 0 ID=Phyra82136;Parent=Phyra82136;rank=3 scaffold_68 . exon 133076 134186 . - . ID=Phyra82136.3;Parent=Phyra82136;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_68 . CDS 134245 134411 . - 0 ID=Phyra82136;Parent=Phyra82136;rank=2 scaffold_68 . exon 134245 134411 . - . ID=Phyra82136.2;Parent=Phyra82136;constitutive=1;ensembl_phase=1;rank=2 scaffold_68 . CDS 134479 134509 . - 0 ID=Phyra82136;Parent=Phyra82136;rank=1 scaffold_68 . exon 134479 134509 . - . ID=Phyra82136.1;Parent=Phyra82136;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 ensembl protein_coding_gene 134883 139913 . - . ID=Phyra82137;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000027;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 134883 139913 . - . ID=Phyra82137;Parent=Phyra82137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 134883 135992 . - 0 ID=Phyra82137;Parent=Phyra82137;rank=11 scaffold_68 . exon 134883 135992 . - . ID=Phyra82137.11;Parent=Phyra82137;constitutive=1;rank=11 scaffold_68 . CDS 136063 136248 . - 0 ID=Phyra82137;Parent=Phyra82137;rank=10 scaffold_68 . exon 136063 136248 . - . ID=Phyra82137.10;Parent=Phyra82137;constitutive=1;rank=10 scaffold_68 . CDS 136560 136635 . - 0 ID=Phyra82137;Parent=Phyra82137;rank=9 scaffold_68 . exon 136560 136635 . - . ID=Phyra82137.9;Parent=Phyra82137;constitutive=1;ensembl_phase=2;rank=9 scaffold_68 . CDS 136701 137321 . - 0 ID=Phyra82137;Parent=Phyra82137;rank=8 scaffold_68 . exon 136701 137321 . - . ID=Phyra82137.8;Parent=Phyra82137;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_68 . CDS 137418 137646 . - 0 ID=Phyra82137;Parent=Phyra82137;rank=7 scaffold_68 . CDS 137701 137809 . - 0 ID=Phyra82137;Parent=Phyra82137;rank=6 scaffold_68 . CDS 137872 138056 . - 0 ID=Phyra82137;Parent=Phyra82137;rank=5 scaffold_68 . CDS 138116 138192 . - 0 ID=Phyra82137;Parent=Phyra82137;rank=4 scaffold_68 . CDS 138557 138792 . - 0 ID=Phyra82137;Parent=Phyra82137;rank=3 scaffold_68 . CDS 138835 139665 . - 0 ID=Phyra82137;Parent=Phyra82137;rank=2 scaffold_68 . CDS 139731 139913 . - 0 ID=Phyra82137;Parent=Phyra82137;rank=1 scaffold_68 . exon 137418 137646 . - . ID=Phyra82137.7;Parent=Phyra82137;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_68 . exon 137701 137809 . - . ID=Phyra82137.6;Parent=Phyra82137;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_68 . exon 137872 138056 . - . ID=Phyra82137.5;Parent=Phyra82137;constitutive=1;ensembl_phase=1;rank=5 scaffold_68 . exon 138116 138192 . - . ID=Phyra82137.4;Parent=Phyra82137;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_68 . exon 138557 138792 . - . ID=Phyra82137.3;Parent=Phyra82137;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_68 . exon 138835 139665 . - . ID=Phyra82137.2;Parent=Phyra82137;constitutive=1;rank=2 scaffold_68 . exon 139731 139913 . - . ID=Phyra82137.1;Parent=Phyra82137;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 145059 145634 . - . ID=Phyra82138;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000028;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 145059 145634 . - . ID=Phyra82138;Parent=Phyra82138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 145059 145103 . - 0 ID=Phyra82138;Parent=Phyra82138;rank=2 scaffold_68 . exon 145059 145103 . - . ID=Phyra82138.2;Parent=Phyra82138;constitutive=1;rank=2 scaffold_68 . CDS 145182 145634 . - 0 ID=Phyra82138;Parent=Phyra82138;rank=1 scaffold_68 . exon 145182 145634 . - . ID=Phyra82138.1;Parent=Phyra82138;constitutive=1;rank=1 scaffold_68 . repeat_region 151857 151870 . ? . description=dust scaffold_68 . biological_region 152694 152698 0.999 + . logic_name=eponine scaffold_68 . repeat_region 154735 154748 . ? . description=dust scaffold_68 ensembl protein_coding_gene 152071 153174 . - . ID=Phyra82139;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000029;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 152071 153174 . - . ID=Phyra82139;Parent=Phyra82139;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 152071 152256 . - 0 ID=Phyra82139;Parent=Phyra82139;rank=3 scaffold_68 . exon 152071 152256 . - . ID=Phyra82139.3;Parent=Phyra82139;constitutive=1;rank=3 scaffold_68 . CDS 152335 152843 . - 0 ID=Phyra82139;Parent=Phyra82139;rank=2 scaffold_68 . exon 152335 152843 . - . ID=Phyra82139.2;Parent=Phyra82139;constitutive=1;ensembl_phase=1;rank=2 scaffold_68 . CDS 152928 153174 . - 0 ID=Phyra82139;Parent=Phyra82139;rank=1 scaffold_68 . exon 152928 153174 . - . ID=Phyra82139.1;Parent=Phyra82139;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 ensembl protein_coding_gene 155857 157801 . - . ID=Phyra82140;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000030;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 155857 157801 . - . ID=Phyra82140;Parent=Phyra82140;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 155857 156434 . - 0 ID=Phyra82140;Parent=Phyra82140;rank=4 scaffold_68 . exon 155857 156434 . - . ID=Phyra82140.4;Parent=Phyra82140;constitutive=1;ensembl_phase=1;rank=4 scaffold_68 . CDS 156509 156836 . - 0 ID=Phyra82140;Parent=Phyra82140;rank=3 scaffold_68 . exon 156509 156836 . - . ID=Phyra82140.3;Parent=Phyra82140;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_68 . CDS 156863 156950 . - 0 ID=Phyra82140;Parent=Phyra82140;rank=2 scaffold_68 . CDS 157332 157801 . - 0 ID=Phyra82140;Parent=Phyra82140;rank=1 scaffold_68 ensembl protein_coding_gene 163958 164560 . - . ID=Phyra71996;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_68000002;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 163958 164560 . - . ID=Phyra71996;Parent=Phyra71996;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 163958 164560 . - 0 ID=Phyra71996;Parent=Phyra71996;rank=1 scaffold_68 . exon 163958 164560 . - . ID=Phyra71996.1;Parent=Phyra71996;constitutive=1;rank=1 scaffold_68 . exon 156863 156950 . - . ID=Phyra82140.2;Parent=Phyra82140;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . exon 157332 157801 . - . ID=Phyra82140.1;Parent=Phyra82140;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 ensembl protein_coding_gene 159160 159978 . + . ID=Phyra82141;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000031;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 159160 159978 . + . ID=Phyra82141;Parent=Phyra82141;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 159160 159978 . + 0 ID=Phyra82141;Parent=Phyra82141;rank=1 scaffold_68 . exon 159160 159978 . + . ID=Phyra82141.1;Parent=Phyra82141;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 160155 160757 . - . ID=Phyra82142;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000032;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 160155 160757 . - . ID=Phyra82142;Parent=Phyra82142;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 160155 160757 . - 0 ID=Phyra82142;Parent=Phyra82142;rank=1 scaffold_68 . exon 160155 160757 . - . ID=Phyra82142.1;Parent=Phyra82142;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 164789 165974 . + . ID=Phyra82144;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000034;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 164789 165974 . + . ID=Phyra82144;Parent=Phyra82144;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 164789 165885 . + 0 ID=Phyra82144;Parent=Phyra82144;rank=1 scaffold_68 . exon 164789 165885 . + . ID=Phyra82144.1;Parent=Phyra82144;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 . CDS 165971 165974 . + 0 ID=Phyra82144;Parent=Phyra82144;rank=2 scaffold_68 . exon 165971 165974 . + . ID=Phyra82144.2;Parent=Phyra82144;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . biological_region 166952 166955 0.999 + . logic_name=eponine scaffold_68 . biological_region 168997 168999 0.999 - . logic_name=eponine scaffold_68 ensembl protein_coding_gene 166691 167251 . + . ID=Phyra71997;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_68000003;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 166691 167251 . + . ID=Phyra71997;Parent=Phyra71997;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 166691 167251 . + 0 ID=Phyra71997;Parent=Phyra71997;rank=1 scaffold_68 . exon 166691 167251 . + . ID=Phyra71997.1;Parent=Phyra71997;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 171130 172089 . + . ID=Phyra71998;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_68000004;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 171130 172089 . + . ID=Phyra71998;Parent=Phyra71998;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 171130 172089 . + 0 ID=Phyra71998;Parent=Phyra71998;rank=1 scaffold_68 . exon 171130 172089 . + . ID=Phyra71998.1;Parent=Phyra71998;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 167448 169259 . - . ID=Phyra82146;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000036;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 167448 169259 . - . ID=Phyra82146;Parent=Phyra82146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 167448 167948 . - 0 ID=Phyra82146;Parent=Phyra82146;rank=3 scaffold_68 . exon 167448 167948 . - . ID=Phyra82146.3;Parent=Phyra82146;constitutive=1;rank=3 scaffold_68 . CDS 167983 168222 . - 0 ID=Phyra82146;Parent=Phyra82146;rank=2 scaffold_68 . exon 167983 168222 . - . ID=Phyra82146.2;Parent=Phyra82146;constitutive=1;rank=2 scaffold_68 . CDS 168327 169259 . - 0 ID=Phyra82146;Parent=Phyra82146;rank=1 scaffold_68 . exon 168327 169259 . - . ID=Phyra82146.1;Parent=Phyra82146;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 172322 173707 . + . ID=Phyra82148;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000038;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 172322 173707 . + . ID=Phyra82148;Parent=Phyra82148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 172322 172807 . + 0 ID=Phyra82148;Parent=Phyra82148;rank=1 scaffold_68 . exon 172322 172807 . + . ID=Phyra82148.1;Parent=Phyra82148;constitutive=1;rank=1 scaffold_68 . CDS 172899 173225 . + 0 ID=Phyra82148;Parent=Phyra82148;rank=2 scaffold_68 . exon 172899 173225 . + . ID=Phyra82148.2;Parent=Phyra82148;constitutive=1;rank=2 scaffold_68 . CDS 173273 173707 . + 0 ID=Phyra82148;Parent=Phyra82148;rank=3 scaffold_68 . exon 173273 173707 . + . ID=Phyra82148.3;Parent=Phyra82148;constitutive=1;rank=3 scaffold_68 ensembl protein_coding_gene 173791 174195 . - . ID=Phyra96249;biotype=protein_coding;external_name=C_scaffold_68000013;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 173791 174195 . - . ID=Phyra96249;Parent=Phyra96249;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 173791 174195 . - 0 ID=Phyra96249;Parent=Phyra96249;rank=1 scaffold_68 . exon 173791 174195 . - . ID=Phyra96249.1;Parent=Phyra96249;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 175750 177305 . - . ID=Phyra96250;biotype=protein_coding;external_name=C_scaffold_68000014;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 175750 177305 . - . ID=Phyra96250;Parent=Phyra96250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 175750 176178 . - 0 ID=Phyra96250;Parent=Phyra96250;rank=4 scaffold_68 . exon 175750 176178 . - . ID=Phyra96250.4;Parent=Phyra96250;constitutive=1;rank=4 scaffold_68 . CDS 176242 176562 . - 0 ID=Phyra96250;Parent=Phyra96250;rank=3 scaffold_68 . CDS 176634 176855 . - 0 ID=Phyra96250;Parent=Phyra96250;rank=2 scaffold_68 . CDS 176877 177305 . - 0 ID=Phyra96250;Parent=Phyra96250;rank=1 scaffold_68 ensembl protein_coding_gene 180794 182382 . + . ID=Phyra82150;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000040;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 180794 182382 . + . ID=Phyra82150;Parent=Phyra82150;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 180794 181489 . + 0 ID=Phyra82150;Parent=Phyra82150;rank=1 scaffold_68 . exon 180794 181489 . + . ID=Phyra82150.1;Parent=Phyra82150;constitutive=1;rank=1 scaffold_68 . CDS 181553 181873 . + 0 ID=Phyra82150;Parent=Phyra82150;rank=2 scaffold_68 . exon 181553 181873 . + . ID=Phyra82150.2;Parent=Phyra82150;constitutive=1;rank=2 scaffold_68 . CDS 181939 182382 . + 0 ID=Phyra82150;Parent=Phyra82150;rank=3 scaffold_68 . exon 181939 182382 . + . ID=Phyra82150.3;Parent=Phyra82150;constitutive=1;rank=3 scaffold_68 ensembl protein_coding_gene 183776 184950 . + . ID=Phyra82151;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000041;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 183776 184950 . + . ID=Phyra82151;Parent=Phyra82151;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 183776 184365 . + 0 ID=Phyra82151;Parent=Phyra82151;rank=1 scaffold_68 . exon 183776 184365 . + . ID=Phyra82151.1;Parent=Phyra82151;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 . CDS 184445 184721 . + 0 ID=Phyra82151;Parent=Phyra82151;rank=2 scaffold_68 . exon 184445 184721 . + . ID=Phyra82151.2;Parent=Phyra82151;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 184822 184950 . + 0 ID=Phyra82151;Parent=Phyra82151;rank=3 scaffold_68 . exon 184822 184950 . + . ID=Phyra82151.3;Parent=Phyra82151;constitutive=1;rank=3 scaffold_68 . exon 176242 176562 . - . ID=Phyra96250.3;Parent=Phyra96250;constitutive=1;rank=3 scaffold_68 . exon 176634 176855 . - . ID=Phyra96250.2;Parent=Phyra96250;constitutive=1;rank=2 scaffold_68 . exon 176877 177305 . - . ID=Phyra96250.1;Parent=Phyra96250;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 178652 179580 . + . ID=Phyra96251;biotype=protein_coding;external_name=C_scaffold_68000015;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 178652 179580 . + . ID=Phyra96251;Parent=Phyra96251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 178652 178720 . + 0 ID=Phyra96251;Parent=Phyra96251;rank=1 scaffold_68 . exon 178652 178720 . + . ID=Phyra96251.1;Parent=Phyra96251;constitutive=1;rank=1 scaffold_68 . CDS 178792 178908 . + 0 ID=Phyra96251;Parent=Phyra96251;rank=2 scaffold_68 . exon 178792 178908 . + . ID=Phyra96251.2;Parent=Phyra96251;constitutive=1;rank=2 scaffold_68 . CDS 179119 179464 . + 0 ID=Phyra96251;Parent=Phyra96251;rank=3 scaffold_68 . exon 179119 179464 . + . ID=Phyra96251.3;Parent=Phyra96251;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_68 . CDS 179534 179580 . + 0 ID=Phyra96251;Parent=Phyra96251;rank=4 scaffold_68 . exon 179534 179580 . + . ID=Phyra96251.4;Parent=Phyra96251;constitutive=1;ensembl_phase=1;rank=4 scaffold_68 . biological_region 187005 187006 0.999 + . logic_name=eponine scaffold_68 . repeat_region 187845 187853 . ? . description=dust scaffold_68 . biological_region 195554 195558 0.999 - . logic_name=eponine scaffold_68 ensembl protein_coding_gene 193915 195306 . - . ID=Phyra82152;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000042;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 193915 195306 . - . ID=Phyra82152;Parent=Phyra82152;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 193915 194349 . - 0 ID=Phyra82152;Parent=Phyra82152;rank=3 scaffold_68 . exon 193915 194349 . - . ID=Phyra82152.3;Parent=Phyra82152;constitutive=1;rank=3 scaffold_68 . CDS 194560 194694 . - 0 ID=Phyra82152;Parent=Phyra82152;rank=2 scaffold_68 . exon 194560 194694 . - . ID=Phyra82152.2;Parent=Phyra82152;constitutive=1;rank=2 scaffold_68 . CDS 194761 195306 . - 0 ID=Phyra82152;Parent=Phyra82152;rank=1 scaffold_68 . exon 194761 195306 . - . ID=Phyra82152.1;Parent=Phyra82152;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 195426 195941 . - . ID=Phyra82153;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000043;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 195426 195941 . - . ID=Phyra82153;Parent=Phyra82153;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 195426 195941 . - 0 ID=Phyra82153;Parent=Phyra82153;rank=1 scaffold_68 . exon 195426 195941 . - . ID=Phyra82153.1;Parent=Phyra82153;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 201578 205864 . - . ID=Phyra82155;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000045;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 201578 205864 . - . ID=Phyra82155;Parent=Phyra82155;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 201578 202039 . - 0 ID=Phyra82155;Parent=Phyra82155;rank=4 scaffold_68 . exon 201578 202039 . - . ID=Phyra82155.4;Parent=Phyra82155;constitutive=1;rank=4 scaffold_68 . CDS 202120 202443 . - 0 ID=Phyra82155;Parent=Phyra82155;rank=3 scaffold_68 . exon 202120 202443 . - . ID=Phyra82155.3;Parent=Phyra82155;constitutive=1;rank=3 scaffold_68 . CDS 202526 203315 . - 0 ID=Phyra82155;Parent=Phyra82155;rank=2 scaffold_68 . exon 202526 203315 . - . ID=Phyra82155.2;Parent=Phyra82155;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 203703 205864 . - 0 ID=Phyra82155;Parent=Phyra82155;rank=1 scaffold_68 . exon 203703 205864 . - . ID=Phyra82155.1;Parent=Phyra82155;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 ensembl protein_coding_gene 198951 200430 . - . ID=Phyra96252;biotype=protein_coding;external_name=C_scaffold_68000016;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 198951 200430 . - . ID=Phyra96252;Parent=Phyra96252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 198951 199391 . - 0 ID=Phyra96252;Parent=Phyra96252;rank=4 scaffold_68 . exon 198951 199391 . - . ID=Phyra96252.4;Parent=Phyra96252;constitutive=1;rank=4 scaffold_68 . CDS 199463 199774 . - 0 ID=Phyra96252;Parent=Phyra96252;rank=3 scaffold_68 . exon 199463 199774 . - . ID=Phyra96252.3;Parent=Phyra96252;constitutive=1;rank=3 scaffold_68 . CDS 199843 200043 . - 0 ID=Phyra96252;Parent=Phyra96252;rank=2 scaffold_68 . exon 199843 200043 . - . ID=Phyra96252.2;Parent=Phyra96252;constitutive=1;rank=2 scaffold_68 . CDS 200260 200430 . - 0 ID=Phyra96252;Parent=Phyra96252;rank=1 scaffold_68 . exon 200260 200430 . - . ID=Phyra96252.1;Parent=Phyra96252;constitutive=1;rank=1 scaffold_68 . repeat_region 206553 206567 . ? . description=dust scaffold_68 . repeat_region 206957 206969 . ? . description=dust scaffold_68 . biological_region 208134 208137 0.999 + . logic_name=eponine scaffold_68 . biological_region 210829 210829 0.999 + . logic_name=eponine scaffold_68 . biological_region 211218 211220 0.999 + . logic_name=eponine scaffold_68 . biological_region 213286 213289 0.999 - . logic_name=eponine scaffold_68 . biological_region 213754 213757 0.999 - . logic_name=eponine scaffold_68 ensembl protein_coding_gene 208040 208639 . - . ID=Phyra82156;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000046;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 208040 208639 . - . ID=Phyra82156;Parent=Phyra82156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 208040 208639 . - 0 ID=Phyra82156;Parent=Phyra82156;rank=1 scaffold_68 . exon 208040 208639 . - . ID=Phyra82156.1;Parent=Phyra82156;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 209029 210135 . + . ID=Phyra82157;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000047;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 209029 210135 . + . ID=Phyra82157;Parent=Phyra82157;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 209029 209244 . + 0 ID=Phyra82157;Parent=Phyra82157;rank=1 scaffold_68 . exon 209029 209244 . + . ID=Phyra82157.1;Parent=Phyra82157;constitutive=1;rank=1 scaffold_68 . CDS 209308 210135 . + 0 ID=Phyra82157;Parent=Phyra82157;rank=2 scaffold_68 . exon 209308 210135 . + . ID=Phyra82157.2;Parent=Phyra82157;constitutive=1;rank=2 scaffold_68 ensembl protein_coding_gene 210386 211699 . + . ID=Phyra82158;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000048;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 210386 211699 . + . ID=Phyra82158;Parent=Phyra82158;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 210386 211699 . + 0 ID=Phyra82158;Parent=Phyra82158;rank=1 scaffold_68 . exon 210386 211699 . + . ID=Phyra82158.1;Parent=Phyra82158;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 212064 213393 . - . ID=Phyra82159;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000049;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 212064 213393 . - . ID=Phyra82159;Parent=Phyra82159;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 212064 212168 . - 0 ID=Phyra82159;Parent=Phyra82159;rank=3 scaffold_68 . exon 212064 212168 . - . ID=Phyra82159.3;Parent=Phyra82159;constitutive=1;rank=3 scaffold_68 . CDS 212722 212928 . - 0 ID=Phyra82159;Parent=Phyra82159;rank=2 scaffold_68 . exon 212722 212928 . - . ID=Phyra82159.2;Parent=Phyra82159;constitutive=1;rank=2 scaffold_68 . CDS 212995 213393 . - 0 ID=Phyra82159;Parent=Phyra82159;rank=1 scaffold_68 . exon 212995 213393 . - . ID=Phyra82159.1;Parent=Phyra82159;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 213535 214881 . + . ID=Phyra82160;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000050;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 213535 214881 . + . ID=Phyra82160;Parent=Phyra82160;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 213535 214881 . + 0 ID=Phyra82160;Parent=Phyra82160;rank=1 scaffold_68 . exon 213535 214881 . + . ID=Phyra82160.1;Parent=Phyra82160;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 221824 223185 . + . ID=Phyra82161;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000051;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 221824 223185 . + . ID=Phyra82161;Parent=Phyra82161;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 221824 223185 . + 0 ID=Phyra82161;Parent=Phyra82161;rank=1 scaffold_68 . exon 221824 223185 . + . ID=Phyra82161.1;Parent=Phyra82161;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 223441 223985 . + . ID=Phyra82162;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000052;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 223441 223985 . + . ID=Phyra82162;Parent=Phyra82162;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 223441 223938 . + 0 ID=Phyra82162;Parent=Phyra82162;rank=1 scaffold_68 . exon 223441 223938 . + . ID=Phyra82162.1;Parent=Phyra82162;constitutive=1;rank=1 scaffold_68 . CDS 223971 223985 . + 0 ID=Phyra82162;Parent=Phyra82162;rank=2 scaffold_68 . exon 223971 223985 . + . ID=Phyra82162.2;Parent=Phyra82162;constitutive=1;rank=2 scaffold_68 . biological_region 227662 227664 0.999 - . logic_name=eponine scaffold_68 . biological_region 232150 232150 0.999 - . logic_name=eponine scaffold_68 ensembl protein_coding_gene 226876 228447 . - . ID=Phyra82163;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000053;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 226876 228447 . - . ID=Phyra82163;Parent=Phyra82163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 226876 228447 . - 0 ID=Phyra82163;Parent=Phyra82163;rank=1 scaffold_68 . exon 226876 228447 . - . ID=Phyra82163.1;Parent=Phyra82163;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 228617 230291 . - . ID=Phyra82164;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000054;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 228617 230291 . - . ID=Phyra82164;Parent=Phyra82164;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 228617 229072 . - 0 ID=Phyra82164;Parent=Phyra82164;rank=2 scaffold_68 . exon 228617 229072 . - . ID=Phyra82164.2;Parent=Phyra82164;constitutive=1;rank=2 scaffold_68 . CDS 229158 230291 . - 0 ID=Phyra82164;Parent=Phyra82164;rank=1 scaffold_68 . exon 229158 230291 . - . ID=Phyra82164.1;Parent=Phyra82164;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 230507 232122 . - . ID=Phyra82165;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000055;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 230507 232122 . - . ID=Phyra82165;Parent=Phyra82165;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 230507 230953 . - 0 ID=Phyra82165;Parent=Phyra82165;rank=2 scaffold_68 . exon 230507 230953 . - . ID=Phyra82165.2;Parent=Phyra82165;constitutive=1;rank=2 scaffold_68 . CDS 231031 232122 . - 0 ID=Phyra82165;Parent=Phyra82165;rank=1 scaffold_68 . exon 231031 232122 . - . ID=Phyra82165.1;Parent=Phyra82165;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 232651 234285 . + . ID=Phyra82166;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000056;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 232651 234285 . + . ID=Phyra82166;Parent=Phyra82166;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 232651 233439 . + 0 ID=Phyra82166;Parent=Phyra82166;rank=1 scaffold_68 . exon 232651 233439 . + . ID=Phyra82166.1;Parent=Phyra82166;constitutive=1;rank=1 scaffold_68 . CDS 233515 234285 . + 0 ID=Phyra82166;Parent=Phyra82166;rank=2 scaffold_68 . exon 233515 234285 . + . ID=Phyra82166.2;Parent=Phyra82166;constitutive=1;rank=2 scaffold_68 ensembl protein_coding_gene 234477 235824 . - . ID=Phyra82167;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000057;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 234477 235824 . - . ID=Phyra82167;Parent=Phyra82167;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 234477 234974 . - 0 ID=Phyra82167;Parent=Phyra82167;rank=3 scaffold_68 . exon 234477 234974 . - . ID=Phyra82167.3;Parent=Phyra82167;constitutive=1;rank=3 scaffold_68 . CDS 235045 235347 . - 0 ID=Phyra82167;Parent=Phyra82167;rank=2 scaffold_68 . CDS 235477 235824 . - 0 ID=Phyra82167;Parent=Phyra82167;rank=1 scaffold_68 . repeat_region 235890 235939 . ? . description=dust scaffold_68 . repeat_region 236536 236543 . ? . description=dust scaffold_68 . repeat_region 238368 238393 . ? . description=trf scaffold_68 . repeat_region 240096 242851 . ? . description=dust scaffold_68 . repeat_region 244311 244360 . ? . description=dust scaffold_68 . repeat_region 244361 246218 . + . description=GypsyPi-1c_I-int scaffold_68 . exon 235045 235347 . - . ID=Phyra82167.2;Parent=Phyra82167;constitutive=1;rank=2 scaffold_68 . exon 235477 235824 . - . ID=Phyra82167.1;Parent=Phyra82167;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 243196 244271 . - . ID=Phyra82168;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000058;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 243196 244271 . - . ID=Phyra82168;Parent=Phyra82168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 243196 243204 . - 0 ID=Phyra82168;Parent=Phyra82168;rank=3 scaffold_68 . exon 243196 243204 . - . ID=Phyra82168.3;Parent=Phyra82168;constitutive=1;rank=3 scaffold_68 . CDS 243243 243545 . - 0 ID=Phyra82168;Parent=Phyra82168;rank=2 scaffold_68 . exon 243243 243545 . - . ID=Phyra82168.2;Parent=Phyra82168;constitutive=1;rank=2 scaffold_68 . CDS 243675 244271 . - 0 ID=Phyra82168;Parent=Phyra82168;rank=1 scaffold_68 . exon 243675 244271 . - . ID=Phyra82168.1;Parent=Phyra82168;constitutive=1;rank=1 scaffold_68 . biological_region 246919 246920 0.999 - . logic_name=eponine scaffold_68 . biological_region 247806 247807 0.999 + . logic_name=eponine scaffold_68 ensembl protein_coding_gene 246861 248080 . - . ID=Phyra82169;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000059;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 246861 248080 . - . ID=Phyra82169;Parent=Phyra82169;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 246861 247058 . - 0 ID=Phyra82169;Parent=Phyra82169;rank=4 scaffold_68 . exon 246861 247058 . - . ID=Phyra82169.4;Parent=Phyra82169;constitutive=1;rank=4 scaffold_68 . CDS 247130 247257 . - 0 ID=Phyra82169;Parent=Phyra82169;rank=3 scaffold_68 . exon 247130 247257 . - . ID=Phyra82169.3;Parent=Phyra82169;constitutive=1;ensembl_phase=1;rank=3 scaffold_68 . CDS 247294 247491 . - 0 ID=Phyra82169;Parent=Phyra82169;rank=2 scaffold_68 . exon 247294 247491 . - . ID=Phyra82169.2;Parent=Phyra82169;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_68 . CDS 247516 248080 . - 0 ID=Phyra82169;Parent=Phyra82169;rank=1 scaffold_68 . exon 247516 248080 . - . ID=Phyra82169.1;Parent=Phyra82169;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 ensembl protein_coding_gene 249140 249865 . + . ID=Phyra82170;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000060;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 249140 249865 . + . ID=Phyra82170;Parent=Phyra82170;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 249140 249865 . + 0 ID=Phyra82170;Parent=Phyra82170;rank=1 scaffold_68 . exon 249140 249865 . + . ID=Phyra82170.1;Parent=Phyra82170;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 252941 255982 . + . ID=Phyra96255;biotype=protein_coding;external_name=C_scaffold_68000019;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 252941 255982 . + . ID=Phyra96255;Parent=Phyra96255;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 252941 253043 . + 0 ID=Phyra96255;Parent=Phyra96255;rank=1 scaffold_68 . exon 252941 253043 . + . ID=Phyra96255.1;Parent=Phyra96255;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 . CDS 253200 253390 . + 0 ID=Phyra96255;Parent=Phyra96255;rank=2 scaffold_68 . exon 253200 253390 . + . ID=Phyra96255.2;Parent=Phyra96255;constitutive=1;ensembl_phase=1;rank=2 scaffold_68 . CDS 253499 254463 . + 0 ID=Phyra96255;Parent=Phyra96255;rank=3 scaffold_68 . exon 253499 254463 . + . ID=Phyra96255.3;Parent=Phyra96255;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_68 . CDS 254596 255034 . + 0 ID=Phyra96255;Parent=Phyra96255;rank=4 scaffold_68 . CDS 255077 255454 . + 0 ID=Phyra96255;Parent=Phyra96255;rank=5 scaffold_68 . CDS 255539 255982 . + 0 ID=Phyra96255;Parent=Phyra96255;rank=6 scaffold_68 . repeat_region 256549 256577 . ? . description=trf scaffold_68 . repeat_region 258718 258750 . ? . description=trf scaffold_68 . repeat_region 261350 261359 . ? . description=dust scaffold_68 . repeat_region 261483 261493 . ? . description=dust scaffold_68 ensembl protein_coding_gene 256844 257920 . - . ID=Phyra82173;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000063;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 256844 257920 . - . ID=Phyra82173;Parent=Phyra82173;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 256844 257037 . - 0 ID=Phyra82173;Parent=Phyra82173;rank=4 scaffold_68 . exon 256844 257037 . - . ID=Phyra82173.4;Parent=Phyra82173;constitutive=1;ensembl_phase=1;rank=4 scaffold_68 . CDS 257097 257379 . - 0 ID=Phyra82173;Parent=Phyra82173;rank=3 scaffold_68 . exon 257097 257379 . - . ID=Phyra82173.3;Parent=Phyra82173;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_68 . CDS 257448 257660 . - 0 ID=Phyra82173;Parent=Phyra82173;rank=2 scaffold_68 . exon 257448 257660 . - . ID=Phyra82173.2;Parent=Phyra82173;constitutive=1;rank=2 scaffold_68 . CDS 257744 257920 . - 0 ID=Phyra82173;Parent=Phyra82173;rank=1 scaffold_68 . exon 257744 257920 . - . ID=Phyra82173.1;Parent=Phyra82173;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 258182 259024 . - . ID=Phyra82174;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000064;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 258182 259024 . - . ID=Phyra82174;Parent=Phyra82174;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 258182 258894 . - 0 ID=Phyra82174;Parent=Phyra82174;rank=2 scaffold_68 . exon 258182 258894 . - . ID=Phyra82174.2;Parent=Phyra82174;constitutive=1;ensembl_phase=1;rank=2 scaffold_68 . CDS 259012 259024 . - 0 ID=Phyra82174;Parent=Phyra82174;rank=1 scaffold_68 . exon 259012 259024 . - . ID=Phyra82174.1;Parent=Phyra82174;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 . exon 254596 255034 . + . ID=Phyra96255.4;Parent=Phyra96255;constitutive=1;ensembl_phase=2;rank=4 scaffold_68 . exon 255077 255454 . + . ID=Phyra96255.5;Parent=Phyra96255;constitutive=1;rank=5 scaffold_68 . exon 255539 255982 . + . ID=Phyra96255.6;Parent=Phyra96255;constitutive=1;rank=6 scaffold_68 . biological_region 266519 266523 0.999 - . logic_name=eponine scaffold_68 . biological_region 266913 266913 0.999 - . logic_name=eponine scaffold_68 . biological_region 267118 267123 0.999 - . logic_name=eponine scaffold_68 . biological_region 267140 267140 0.999 - . logic_name=eponine scaffold_68 . biological_region 267294 267299 0.999 - . logic_name=eponine scaffold_68 . biological_region 270480 270481 0.999 + . logic_name=eponine scaffold_68 ensembl protein_coding_gene 265768 268340 . + . ID=Phyra82175;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000065;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 265768 268340 . + . ID=Phyra82175;Parent=Phyra82175;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 265768 265839 . + 0 ID=Phyra82175;Parent=Phyra82175;rank=1 scaffold_68 . exon 265768 265839 . + . ID=Phyra82175.1;Parent=Phyra82175;constitutive=1;rank=1 scaffold_68 . CDS 265930 266185 . + 0 ID=Phyra82175;Parent=Phyra82175;rank=2 scaffold_68 . exon 265930 266185 . + . ID=Phyra82175.2;Parent=Phyra82175;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_68 . CDS 266385 267503 . + 0 ID=Phyra82175;Parent=Phyra82175;rank=3 scaffold_68 . exon 266385 267503 . + . ID=Phyra82175.3;Parent=Phyra82175;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_68 . CDS 267541 267838 . + 0 ID=Phyra82175;Parent=Phyra82175;rank=4 scaffold_68 . exon 267541 267838 . + . ID=Phyra82175.4;Parent=Phyra82175;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_68 . CDS 267983 268340 . + 0 ID=Phyra82175;Parent=Phyra82175;rank=5 scaffold_68 . exon 267983 268340 . + . ID=Phyra82175.5;Parent=Phyra82175;constitutive=1;ensembl_phase=2;rank=5 scaffold_68 . repeat_region 278552 289976 . ? . description=dust scaffold_68 ensembl protein_coding_gene 276900 278202 . - . ID=Phyra82176;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_68000066;logic_name=jgi_phyra1 scaffold_68 ensembl transcript 276900 278202 . - . ID=Phyra82176;Parent=Phyra82176;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_68 . CDS 276900 277800 . - 0 ID=Phyra82176;Parent=Phyra82176;rank=3 scaffold_68 . exon 276900 277800 . - . ID=Phyra82176.3;Parent=Phyra82176;constitutive=1;ensembl_phase=2;rank=3 scaffold_68 . CDS 277925 278103 . - 0 ID=Phyra82176;Parent=Phyra82176;rank=2 scaffold_68 . exon 277925 278103 . - . ID=Phyra82176.2;Parent=Phyra82176;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_68 . CDS 278146 278202 . - 0 ID=Phyra82176;Parent=Phyra82176;rank=1 scaffold_68 . exon 278146 278202 . - . ID=Phyra82176.1;Parent=Phyra82176;constitutive=1;rank=1 scaffold_68 . repeat_region 292695 292737 . ? . description=trf scaffold_68 . repeat_region 293230 293575 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_65 1 294636 scaffold_65 . repeat_region 519 560 . ? . description=trf scaffold_65 . repeat_region 765 814 . ? . description=dust scaffold_65 . repeat_region 815 1098 . ? . description=trf scaffold_65 . repeat_region 852 1098 . ? . description=dust scaffold_65 . repeat_region 1262 1289 . ? . description=trf scaffold_65 . repeat_region 1580 1612 . ? . description=trf scaffold_65 . repeat_region 1656 1669 . ? . description=dust scaffold_65 . repeat_region 1799 4191 . ? . description=dust scaffold_65 . repeat_region 4641 4682 . ? . description=trf scaffold_65 . repeat_region 4760 4793 . ? . description=trf scaffold_65 . repeat_region 4798 4805 . ? . description=dust scaffold_65 . repeat_region 4847 4854 . ? . description=dust scaffold_65 . repeat_region 5410 5432 . ? . description=trf scaffold_65 . repeat_region 5410 5432 . ? . description=dust scaffold_65 . repeat_region 6176 6183 . ? . description=dust scaffold_65 . repeat_region 6208 6224 . ? . description=dust scaffold_65 . repeat_region 6392 6401 . ? . description=dust scaffold_65 . repeat_region 7491 7501 . ? . description=dust scaffold_65 . biological_region 11485 11487 0.999 + . logic_name=eponine scaffold_65 . biological_region 16630 16635 0.999 - . logic_name=eponine scaffold_65 . biological_region 16723 16728 0.999 - . logic_name=eponine scaffold_65 . biological_region 16778 16782 0.999 + . logic_name=eponine scaffold_65 . biological_region 16815 16818 0.999 - . logic_name=eponine scaffold_65 ensembl protein_coding_gene 16155 17376 . + . ID=Phyra81865;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000001;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 16155 17376 . + . ID=Phyra81865;Parent=Phyra81865;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 16155 17129 . + 0 ID=Phyra81865;Parent=Phyra81865;rank=1 scaffold_65 . exon 16155 17129 . + . ID=Phyra81865.1;Parent=Phyra81865;constitutive=1;rank=1 scaffold_65 . CDS 17269 17376 . + 0 ID=Phyra81865;Parent=Phyra81865;rank=2 scaffold_65 . exon 17269 17376 . + . ID=Phyra81865.2;Parent=Phyra81865;constitutive=1;rank=2 scaffold_65 . repeat_region 17489 20679 . ? . description=dust scaffold_65 . repeat_region 21287 21675 . - . description=GypsyPi-1c_I-int scaffold_65 . repeat_region 22075 22833 . ? . description=dust scaffold_65 . repeat_region 24652 34831 . ? . description=dust scaffold_65 . biological_region 38427 38429 0.999 + . logic_name=eponine scaffold_65 ensembl protein_coding_gene 38850 39647 . - . ID=Phyra81866;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000002;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 38850 39647 . - . ID=Phyra81866;Parent=Phyra81866;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 38850 39647 . - 0 ID=Phyra81866;Parent=Phyra81866;rank=1 scaffold_65 . exon 38850 39647 . - . ID=Phyra81866.1;Parent=Phyra81866;constitutive=1;rank=1 scaffold_65 . repeat_region 40068 40498 . ? . description=dust scaffold_65 . repeat_region 42766 46697 . ? . description=dust scaffold_65 . repeat_region 46999 47754 . + . description=GypsyPi-1c_I-int scaffold_65 . repeat_region 47985 48034 . ? . description=dust scaffold_65 . repeat_region 48583 49829 . + . description=GypsyPi-1c_I-int scaffold_65 ensembl protein_coding_gene 40686 42649 . - . ID=Phyra81867;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000003;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 40686 42649 . - . ID=Phyra81867;Parent=Phyra81867;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 40686 40717 . - 0 ID=Phyra81867;Parent=Phyra81867;rank=3 scaffold_65 . exon 40686 40717 . - . ID=Phyra81867.3;Parent=Phyra81867;constitutive=1;ensembl_phase=1;rank=3 scaffold_65 . CDS 40851 42429 . - 0 ID=Phyra81867;Parent=Phyra81867;rank=2 scaffold_65 . exon 40851 42429 . - . ID=Phyra81867.2;Parent=Phyra81867;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_65 . CDS 42467 42649 . - 0 ID=Phyra81867;Parent=Phyra81867;rank=1 scaffold_65 . exon 42467 42649 . - . ID=Phyra81867.1;Parent=Phyra81867;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 48298 49601 . + . ID=Phyra81868;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000004;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 48298 49601 . + . ID=Phyra81868;Parent=Phyra81868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 48298 49538 . + 0 ID=Phyra81868;Parent=Phyra81868;rank=1 scaffold_65 . exon 48298 49538 . + . ID=Phyra81868.1;Parent=Phyra81868;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 49595 49601 . + 0 ID=Phyra81868;Parent=Phyra81868;rank=2 scaffold_65 . repeat_region 50883 50902 . ? . description=trf scaffold_65 . repeat_region 52139 52176 . ? . description=trf scaffold_65 . exon 49595 49601 . + . ID=Phyra81868.2;Parent=Phyra81868;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 ensembl protein_coding_gene 52365 55082 . + . ID=Phyra81869;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000005;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 52365 55082 . + . ID=Phyra81869;Parent=Phyra81869;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 52365 55082 . + 0 ID=Phyra81869;Parent=Phyra81869;rank=1 scaffold_65 . exon 52365 55082 . + . ID=Phyra81869.1;Parent=Phyra81869;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 55970 56428 . + . ID=Phyra81870;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000006;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 55970 56428 . + . ID=Phyra81870;Parent=Phyra81870;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 55970 56428 . + 0 ID=Phyra81870;Parent=Phyra81870;rank=1 scaffold_65 . exon 55970 56428 . + . ID=Phyra81870.1;Parent=Phyra81870;constitutive=1;rank=1 scaffold_65 . biological_region 61432 61436 0.999 + . logic_name=eponine scaffold_65 . biological_region 61459 61460 0.999 - . logic_name=eponine scaffold_65 . biological_region 65355 65356 0.999 - . logic_name=eponine scaffold_65 . biological_region 67607 67610 0.999 + . logic_name=eponine scaffold_65 . biological_region 67834 67837 0.999 - . logic_name=eponine scaffold_65 . biological_region 67867 67869 0.999 - . logic_name=eponine scaffold_65 ensembl protein_coding_gene 62945 64822 . - . ID=Phyra52025;biotype=protein_coding;external_name=gwEuk.65.16.1;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 62945 64822 . - . ID=Phyra52025;Parent=Phyra52025;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 62945 64822 . - 0 ID=Phyra52025;Parent=Phyra52025;rank=1 scaffold_65 . exon 62945 64822 . - . ID=Phyra52025.1;Parent=Phyra52025;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 65214 65705 . - . ID=Phyra52030;biotype=protein_coding;external_name=gwEuk.65.21.1;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 65214 65705 . - . ID=Phyra52030;Parent=Phyra52030;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 65214 65705 . - 0 ID=Phyra52030;Parent=Phyra52030;rank=1 scaffold_65 . exon 65214 65705 . - . ID=Phyra52030.1;Parent=Phyra52030;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 61404 62247 . - . ID=Phyra81871;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000007;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 61404 62247 . - . ID=Phyra81871;Parent=Phyra81871;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 61404 62059 . - 0 ID=Phyra81871;Parent=Phyra81871;rank=2 scaffold_65 . exon 61404 62059 . - . ID=Phyra81871.2;Parent=Phyra81871;constitutive=1;ensembl_phase=1;rank=2 scaffold_65 . CDS 62148 62247 . - 0 ID=Phyra81871;Parent=Phyra81871;rank=1 scaffold_65 . exon 62148 62247 . - . ID=Phyra81871.1;Parent=Phyra81871;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 ensembl protein_coding_gene 66206 67846 . - . ID=Phyra81873;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000009;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 66206 67846 . - . ID=Phyra81873;Parent=Phyra81873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 66206 67846 . - 0 ID=Phyra81873;Parent=Phyra81873;rank=1 scaffold_65 . exon 66206 67846 . - . ID=Phyra81873.1;Parent=Phyra81873;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 69477 70622 . - . ID=Phyra81874;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000010;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 69477 70622 . - . ID=Phyra81874;Parent=Phyra81874;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 69477 70489 . - 0 ID=Phyra81874;Parent=Phyra81874;rank=2 scaffold_65 . exon 69477 70489 . - . ID=Phyra81874.2;Parent=Phyra81874;constitutive=1;ensembl_phase=1;rank=2 scaffold_65 . CDS 70553 70622 . - 0 ID=Phyra81874;Parent=Phyra81874;rank=1 scaffold_65 . exon 70553 70622 . - . ID=Phyra81874.1;Parent=Phyra81874;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 ensembl protein_coding_gene 70914 72070 . + . ID=Phyra81875;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000011;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 70914 72070 . + . ID=Phyra81875;Parent=Phyra81875;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 70914 70989 . + 0 ID=Phyra81875;Parent=Phyra81875;rank=1 scaffold_65 . exon 70914 70989 . + . ID=Phyra81875.1;Parent=Phyra81875;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 . CDS 71070 72070 . + 0 ID=Phyra81875;Parent=Phyra81875;rank=2 scaffold_65 . exon 71070 72070 . + . ID=Phyra81875.2;Parent=Phyra81875;constitutive=1;ensembl_phase=1;rank=2 scaffold_65 ensembl protein_coding_gene 72192 73445 . - . ID=Phyra81876;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000012;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 72192 73445 . - . ID=Phyra81876;Parent=Phyra81876;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 72192 72830 . - 0 ID=Phyra81876;Parent=Phyra81876;rank=2 scaffold_65 . exon 72192 72830 . - . ID=Phyra81876.2;Parent=Phyra81876;constitutive=1;rank=2 scaffold_65 . CDS 72906 73445 . - 0 ID=Phyra81876;Parent=Phyra81876;rank=1 scaffold_65 . exon 72906 73445 . - . ID=Phyra81876.1;Parent=Phyra81876;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 74023 76169 . + . ID=Phyra81877;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000013;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 74023 76169 . + . ID=Phyra81877;Parent=Phyra81877;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 74023 76130 . + 0 ID=Phyra81877;Parent=Phyra81877;rank=1 scaffold_65 . exon 74023 76130 . + . ID=Phyra81877.1;Parent=Phyra81877;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 76163 76169 . + 0 ID=Phyra81877;Parent=Phyra81877;rank=2 scaffold_65 . exon 76163 76169 . + . ID=Phyra81877.2;Parent=Phyra81877;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 ensembl protein_coding_gene 77220 80669 . - . ID=Phyra81878;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000014;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 77220 80669 . - . ID=Phyra81878;Parent=Phyra81878;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 77220 80669 . - 0 ID=Phyra81878;Parent=Phyra81878;rank=1 scaffold_65 . exon 77220 80669 . - . ID=Phyra81878.1;Parent=Phyra81878;constitutive=1;rank=1 scaffold_65 . biological_region 80040 80046 0.999 - . logic_name=eponine scaffold_65 . biological_region 80097 80102 0.999 + . logic_name=eponine scaffold_65 . biological_region 80141 80142 0.999 + . logic_name=eponine scaffold_65 . biological_region 80232 80235 0.999 + . logic_name=eponine scaffold_65 . biological_region 80284 80299 0.999 - . logic_name=eponine scaffold_65 . biological_region 80301 80302 0.999 + . logic_name=eponine scaffold_65 . biological_region 80331 80334 0.999 - . logic_name=eponine scaffold_65 . biological_region 80378 80383 0.999 - . logic_name=eponine scaffold_65 . biological_region 80478 80487 0.999 + . logic_name=eponine scaffold_65 . biological_region 80540 80544 0.999 + . logic_name=eponine scaffold_65 . biological_region 80566 80570 0.999 - . logic_name=eponine scaffold_65 . biological_region 80583 80587 0.999 - . logic_name=eponine scaffold_65 . biological_region 80621 80624 0.999 + . logic_name=eponine scaffold_65 . biological_region 80654 80655 0.999 - . logic_name=eponine scaffold_65 . repeat_region 82146 82740 . ? . description=trf scaffold_65 . repeat_region 83172 83409 . ? . description=trf scaffold_65 . repeat_region 83382 83425 . ? . description=trf scaffold_65 . biological_region 86306 86306 0.999 + . logic_name=eponine scaffold_65 . biological_region 88388 88390 0.999 + . logic_name=eponine scaffold_65 ensembl protein_coding_gene 82968 83399 . - . ID=Phyra81879;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000015;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 82968 83399 . - . ID=Phyra81879;Parent=Phyra81879;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 82968 83399 . - 0 ID=Phyra81879;Parent=Phyra81879;rank=1 scaffold_65 . exon 82968 83399 . - . ID=Phyra81879.1;Parent=Phyra81879;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 86083 87694 . - . ID=Phyra81880;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000016;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 86083 87694 . - . ID=Phyra81880;Parent=Phyra81880;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 86083 86184 . - 0 ID=Phyra81880;Parent=Phyra81880;rank=4 scaffold_65 . exon 86083 86184 . - . ID=Phyra81880.4;Parent=Phyra81880;constitutive=1;rank=4 scaffold_65 . CDS 86283 87271 . - 0 ID=Phyra81880;Parent=Phyra81880;rank=3 scaffold_65 . exon 86283 87271 . - . ID=Phyra81880.3;Parent=Phyra81880;constitutive=1;ensembl_phase=1;rank=3 scaffold_65 . CDS 87345 87417 . - 0 ID=Phyra81880;Parent=Phyra81880;rank=2 scaffold_65 . exon 87345 87417 . - . ID=Phyra81880.2;Parent=Phyra81880;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_65 . CDS 87491 87694 . - 0 ID=Phyra81880;Parent=Phyra81880;rank=1 scaffold_65 . exon 87491 87694 . - . ID=Phyra81880.1;Parent=Phyra81880;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 88191 89162 . - . ID=Phyra81881;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000017;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 88191 89162 . - . ID=Phyra81881;Parent=Phyra81881;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 88191 89162 . - 0 ID=Phyra81881;Parent=Phyra81881;rank=1 scaffold_65 . exon 88191 89162 . - . ID=Phyra81881.1;Parent=Phyra81881;constitutive=1;rank=1 scaffold_65 . repeat_region 96735 96753 . ? . description=dust scaffold_65 ensembl protein_coding_gene 89965 94467 . + . ID=Phyra81882;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000018;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 89965 94467 . + . ID=Phyra81882;Parent=Phyra81882;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 89965 94467 . + 0 ID=Phyra81882;Parent=Phyra81882;rank=1 scaffold_65 . exon 89965 94467 . + . ID=Phyra81882.1;Parent=Phyra81882;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 94869 96815 . + . ID=Phyra81883;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000019;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 94869 96815 . + . ID=Phyra81883;Parent=Phyra81883;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 94869 96815 . + 0 ID=Phyra81883;Parent=Phyra81883;rank=1 scaffold_65 . exon 94869 96815 . + . ID=Phyra81883.1;Parent=Phyra81883;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 96907 98241 . - . ID=Phyra81884;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000020;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 96907 98241 . - . ID=Phyra81884;Parent=Phyra81884;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 96907 98241 . - 0 ID=Phyra81884;Parent=Phyra81884;rank=1 scaffold_65 . exon 96907 98241 . - . ID=Phyra81884.1;Parent=Phyra81884;constitutive=1;rank=1 scaffold_65 . repeat_region 98637 98656 . ? . description=trf scaffold_65 . biological_region 98748 98748 0.999 - . logic_name=eponine scaffold_65 . biological_region 98839 98840 0.999 - . logic_name=eponine scaffold_65 . biological_region 105660 105669 0.999 + . logic_name=eponine scaffold_65 . biological_region 105714 105715 0.999 - . logic_name=eponine scaffold_65 . biological_region 106703 106705 0.999 + . logic_name=eponine scaffold_65 . biological_region 107103 107104 0.999 + . logic_name=eponine scaffold_65 . biological_region 107197 107205 0.999 - . logic_name=eponine scaffold_65 . biological_region 107705 107706 0.999 + . logic_name=eponine scaffold_65 . repeat_region 107828 107851 . ? . description=trf scaffold_65 ensembl protein_coding_gene 101867 102418 . - . ID=Phyra52046;biotype=protein_coding;external_name=gwEuk.65.37.1;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 101867 102418 . - . ID=Phyra52046;Parent=Phyra52046;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 101867 102418 . - 0 ID=Phyra52046;Parent=Phyra52046;rank=1 scaffold_65 . exon 101867 102418 . - . ID=Phyra52046.1;Parent=Phyra52046;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 98665 101681 . + . ID=Phyra81885;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000021;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 98665 101681 . + . ID=Phyra81885;Parent=Phyra81885;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 98665 98893 . + 0 ID=Phyra81885;Parent=Phyra81885;rank=1 scaffold_65 . exon 98665 98893 . + . ID=Phyra81885.1;Parent=Phyra81885;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 . CDS 98960 99074 . + 0 ID=Phyra81885;Parent=Phyra81885;rank=2 scaffold_65 . exon 98960 99074 . + . ID=Phyra81885.2;Parent=Phyra81885;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_65 . CDS 99150 99218 . + 0 ID=Phyra81885;Parent=Phyra81885;rank=3 scaffold_65 . exon 99150 99218 . + . ID=Phyra81885.3;Parent=Phyra81885;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_65 . CDS 99285 100043 . + 0 ID=Phyra81885;Parent=Phyra81885;rank=4 scaffold_65 . exon 99285 100043 . + . ID=Phyra81885.4;Parent=Phyra81885;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_65 . CDS 100112 101681 . + 0 ID=Phyra81885;Parent=Phyra81885;rank=5 scaffold_65 . exon 100112 101681 . + . ID=Phyra81885.5;Parent=Phyra81885;constitutive=1;ensembl_phase=2;rank=5 scaffold_65 ensembl protein_coding_gene 103019 103600 . + . ID=Phyra81887;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000023;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 103019 103600 . + . ID=Phyra81887;Parent=Phyra81887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 103019 103600 . + 0 ID=Phyra81887;Parent=Phyra81887;rank=1 scaffold_65 . exon 103019 103600 . + . ID=Phyra81887.1;Parent=Phyra81887;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 104345 106235 . - . ID=Phyra81888;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000024;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 104345 106235 . - . ID=Phyra81888;Parent=Phyra81888;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 104345 104762 . - 0 ID=Phyra81888;Parent=Phyra81888;rank=4 scaffold_65 . exon 104345 104762 . - . ID=Phyra81888.4;Parent=Phyra81888;constitutive=1;ensembl_phase=2;rank=4 scaffold_65 . CDS 105056 105092 . - 0 ID=Phyra81888;Parent=Phyra81888;rank=3 scaffold_65 . exon 105056 105092 . - . ID=Phyra81888.3;Parent=Phyra81888;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_65 . CDS 105230 105247 . - 0 ID=Phyra81888;Parent=Phyra81888;rank=2 scaffold_65 . exon 105230 105247 . - . ID=Phyra81888.2;Parent=Phyra81888;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_65 . CDS 105536 106235 . - 0 ID=Phyra81888;Parent=Phyra81888;rank=1 scaffold_65 . exon 105536 106235 . - . ID=Phyra81888.1;Parent=Phyra81888;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 ensembl protein_coding_gene 106723 107910 . - . ID=Phyra81889;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000025;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 106723 107910 . - . ID=Phyra81889;Parent=Phyra81889;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 106723 107910 . - 0 ID=Phyra81889;Parent=Phyra81889;rank=1 scaffold_65 . exon 106723 107910 . - . ID=Phyra81889.1;Parent=Phyra81889;constitutive=1;rank=1 scaffold_65 . repeat_region 111288 111477 . - . description=Polinton-1_PI scaffold_65 . repeat_region 111649 111656 . ? . description=dust scaffold_65 . repeat_region 114190 114197 . ? . description=dust scaffold_65 . repeat_region 117336 117528 . + . description=Polinton-1_PI scaffold_65 ensembl protein_coding_gene 108204 110555 . - . ID=Phyra81890;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000026;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 108204 110555 . - . ID=Phyra81890;Parent=Phyra81890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 108204 108497 . - 0 ID=Phyra81890;Parent=Phyra81890;rank=2 scaffold_65 . exon 108204 108497 . - . ID=Phyra81890.2;Parent=Phyra81890;constitutive=1;rank=2 scaffold_65 . CDS 108567 110555 . - 0 ID=Phyra81890;Parent=Phyra81890;rank=1 scaffold_65 . exon 108567 110555 . - . ID=Phyra81890.1;Parent=Phyra81890;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 119302 119869 . + . ID=Phyra81891;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000027;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 119302 119869 . + . ID=Phyra81891;Parent=Phyra81891;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 119302 119784 . + 0 ID=Phyra81891;Parent=Phyra81891;rank=1 scaffold_65 . exon 119302 119784 . + . ID=Phyra81891.1;Parent=Phyra81891;constitutive=1;rank=1 scaffold_65 . CDS 119855 119869 . + 0 ID=Phyra81891;Parent=Phyra81891;rank=2 scaffold_65 . exon 119855 119869 . + . ID=Phyra81891.2;Parent=Phyra81891;constitutive=1;rank=2 scaffold_65 . repeat_region 120105 128603 . ? . description=dust scaffold_65 . repeat_region 128864 128965 . - . description=Gypsy-1-LTR_PI scaffold_65 . repeat_region 129631 130337 . - . description=Gypsy-2-I_PI-int scaffold_65 . repeat_region 130374 130423 . ? . description=dust scaffold_65 . repeat_region 131200 131301 . - . description=Gypsy-1-LTR_PI scaffold_65 . repeat_region 132016 132090 . ? . description=dust scaffold_65 . repeat_region 132091 134445 . - . description=Gypsy-2-I_PI-int scaffold_65 . repeat_region 134446 135096 . ? . description=dust scaffold_65 . repeat_region 135100 136033 . - . description=Gypsy-2-I_PI-int scaffold_65 . repeat_region 136034 136083 . ? . description=dust scaffold_65 . repeat_region 136088 139818 . - . description=Gypsy-1-I_PI-int scaffold_65 ensembl protein_coding_gene 132438 132827 . - . ID=Phyra52060;biotype=protein_coding;external_name=gwEuk.65.51.1;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 132438 132827 . - . ID=Phyra52060;Parent=Phyra52060;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 132438 132827 . - 0 ID=Phyra52060;Parent=Phyra52060;rank=1 scaffold_65 . exon 132438 132827 . - . ID=Phyra52060.1;Parent=Phyra52060;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 129196 130294 . + . ID=Phyra81892;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000028;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 129196 130294 . + . ID=Phyra81892;Parent=Phyra81892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 129196 130127 . + 0 ID=Phyra81892;Parent=Phyra81892;rank=1 scaffold_65 . exon 129196 130127 . + . ID=Phyra81892.1;Parent=Phyra81892;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 130231 130294 . + 0 ID=Phyra81892;Parent=Phyra81892;rank=2 scaffold_65 . exon 130231 130294 . + . ID=Phyra81892.2;Parent=Phyra81892;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 . biological_region 142777 142782 0.999 + . logic_name=eponine scaffold_65 . biological_region 143673 143677 0.999 + . logic_name=eponine scaffold_65 ensembl protein_coding_gene 138963 139781 . - . ID=Phyra81893;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000029;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 138963 139781 . - . ID=Phyra81893;Parent=Phyra81893;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 138963 139781 . - 0 ID=Phyra81893;Parent=Phyra81893;rank=1 scaffold_65 . exon 138963 139781 . - . ID=Phyra81893.1;Parent=Phyra81893;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 142467 143069 . - . ID=Phyra81894;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000030;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 142467 143069 . - . ID=Phyra81894;Parent=Phyra81894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 142467 142578 . - 0 ID=Phyra81894;Parent=Phyra81894;rank=2 scaffold_65 . exon 142467 142578 . - . ID=Phyra81894.2;Parent=Phyra81894;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 . CDS 142723 143069 . - 0 ID=Phyra81894;Parent=Phyra81894;rank=1 scaffold_65 . exon 142723 143069 . - . ID=Phyra81894.1;Parent=Phyra81894;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 ensembl protein_coding_gene 143315 144635 . + . ID=Phyra81895;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000031;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 143315 144635 . + . ID=Phyra81895;Parent=Phyra81895;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 143315 144169 . + 0 ID=Phyra81895;Parent=Phyra81895;rank=1 scaffold_65 . exon 143315 144169 . + . ID=Phyra81895.1;Parent=Phyra81895;constitutive=1;rank=1 scaffold_65 . CDS 144248 144399 . + 0 ID=Phyra81895;Parent=Phyra81895;rank=2 scaffold_65 . exon 144248 144399 . + . ID=Phyra81895.2;Parent=Phyra81895;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_65 . CDS 144473 144635 . + 0 ID=Phyra81895;Parent=Phyra81895;rank=3 scaffold_65 . exon 144473 144635 . + . ID=Phyra81895.3;Parent=Phyra81895;constitutive=1;ensembl_phase=2;rank=3 scaffold_65 . repeat_region 154371 154411 . ? . description=trf scaffold_65 ensembl protein_coding_gene 148815 151938 . + . ID=Phyra81896;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000032;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 148815 151938 . + . ID=Phyra81896;Parent=Phyra81896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 148815 149177 . + 0 ID=Phyra81896;Parent=Phyra81896;rank=1 scaffold_65 . exon 148815 149177 . + . ID=Phyra81896.1;Parent=Phyra81896;constitutive=1;rank=1 scaffold_65 . CDS 149309 149790 . + 0 ID=Phyra81896;Parent=Phyra81896;rank=2 scaffold_65 . exon 149309 149790 . + . ID=Phyra81896.2;Parent=Phyra81896;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_65 . CDS 149886 150209 . + 0 ID=Phyra81896;Parent=Phyra81896;rank=3 scaffold_65 . exon 149886 150209 . + . ID=Phyra81896.3;Parent=Phyra81896;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_65 . CDS 150648 150873 . + 0 ID=Phyra81896;Parent=Phyra81896;rank=4 scaffold_65 . exon 150648 150873 . + . ID=Phyra81896.4;Parent=Phyra81896;constitutive=1;ensembl_phase=2;rank=4 scaffold_65 . CDS 150945 151028 . + 0 ID=Phyra81896;Parent=Phyra81896;rank=5 scaffold_65 . exon 150945 151028 . + . ID=Phyra81896.5;Parent=Phyra81896;constitutive=1;rank=5 scaffold_65 . CDS 151109 151194 . + 0 ID=Phyra81896;Parent=Phyra81896;rank=6 scaffold_65 . exon 151109 151194 . + . ID=Phyra81896.6;Parent=Phyra81896;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_65 . CDS 151256 151490 . + 0 ID=Phyra81896;Parent=Phyra81896;rank=7 scaffold_65 . exon 151256 151490 . + . ID=Phyra81896.7;Parent=Phyra81896;constitutive=1;ensembl_phase=2;rank=7 scaffold_65 . CDS 151558 151938 . + 0 ID=Phyra81896;Parent=Phyra81896;rank=8 scaffold_65 . exon 151558 151938 . + . ID=Phyra81896.8;Parent=Phyra81896;constitutive=1;rank=8 scaffold_65 ensembl protein_coding_gene 154744 155886 . + . ID=Phyra81897;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000033;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 154744 155886 . + . ID=Phyra81897;Parent=Phyra81897;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 154744 155886 . + 0 ID=Phyra81897;Parent=Phyra81897;rank=1 scaffold_65 . exon 154744 155886 . + . ID=Phyra81897.1;Parent=Phyra81897;constitutive=1;rank=1 scaffold_65 . repeat_region 157736 157745 . ? . description=dust scaffold_65 . biological_region 164389 164394 0.999 + . logic_name=eponine scaffold_65 . biological_region 164864 164864 0.999 - . logic_name=eponine scaffold_65 . biological_region 165420 165425 0.999 + . logic_name=eponine scaffold_65 ensembl protein_coding_gene 162413 163621 . - . ID=Phyra52064;biotype=protein_coding;external_name=gwEuk.65.55.1;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 162413 163621 . - . ID=Phyra52064;Parent=Phyra52064;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 162413 162527 . - 0 ID=Phyra52064;Parent=Phyra52064;rank=4 scaffold_65 . exon 162413 162527 . - . ID=Phyra52064.4;Parent=Phyra52064;constitutive=1;ensembl_phase=2;rank=4 scaffold_65 . CDS 162591 162713 . - 0 ID=Phyra52064;Parent=Phyra52064;rank=3 scaffold_65 . exon 162591 162713 . - . ID=Phyra52064.3;Parent=Phyra52064;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_65 . CDS 162850 163504 . - 0 ID=Phyra52064;Parent=Phyra52064;rank=2 scaffold_65 . exon 162850 163504 . - . ID=Phyra52064.2;Parent=Phyra52064;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_65 . CDS 163573 163621 . - 0 ID=Phyra52064;Parent=Phyra52064;rank=1 scaffold_65 . exon 163573 163621 . - . ID=Phyra52064.1;Parent=Phyra52064;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 ensembl protein_coding_gene 164397 165754 . + . ID=Phyra52067;biotype=protein_coding;external_name=gwEuk.65.58.1;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 164397 165754 . + . ID=Phyra52067;Parent=Phyra52067;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 164397 164539 . + 0 ID=Phyra52067;Parent=Phyra52067;rank=1 scaffold_65 . exon 164397 164539 . + . ID=Phyra52067.1;Parent=Phyra52067;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 164613 164771 . + 0 ID=Phyra52067;Parent=Phyra52067;rank=2 scaffold_65 . exon 164613 164771 . + . ID=Phyra52067.2;Parent=Phyra52067;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_65 . CDS 164832 165243 . + 0 ID=Phyra52067;Parent=Phyra52067;rank=3 scaffold_65 . exon 164832 165243 . + . ID=Phyra52067.3;Parent=Phyra52067;constitutive=1;ensembl_phase=2;rank=3 scaffold_65 . CDS 165334 165593 . + 0 ID=Phyra52067;Parent=Phyra52067;rank=4 scaffold_65 . exon 165334 165593 . + . ID=Phyra52067.4;Parent=Phyra52067;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_65 . CDS 165673 165754 . + 0 ID=Phyra52067;Parent=Phyra52067;rank=5 scaffold_65 . exon 165673 165754 . + . ID=Phyra52067.5;Parent=Phyra52067;constitutive=1;ensembl_phase=2;rank=5 scaffold_65 ensembl protein_coding_gene 158682 160514 . + . ID=Phyra81898;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000034;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 158682 160514 . + . ID=Phyra81898;Parent=Phyra81898;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 158682 160514 . + 0 ID=Phyra81898;Parent=Phyra81898;rank=1 scaffold_65 . exon 158682 160514 . + . ID=Phyra81898.1;Parent=Phyra81898;constitutive=1;rank=1 scaffold_65 . repeat_region 169281 169322 . ? . description=trf scaffold_65 ensembl protein_coding_gene 168853 169734 . + . ID=Phyra81900;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000036;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 168853 169734 . + . ID=Phyra81900;Parent=Phyra81900;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 168853 168957 . + 0 ID=Phyra81900;Parent=Phyra81900;rank=1 scaffold_65 . exon 168853 168957 . + . ID=Phyra81900.1;Parent=Phyra81900;constitutive=1;rank=1 scaffold_65 . CDS 169042 169734 . + 0 ID=Phyra81900;Parent=Phyra81900;rank=2 scaffold_65 . exon 169042 169734 . + . ID=Phyra81900.2;Parent=Phyra81900;constitutive=1;rank=2 scaffold_65 ensembl protein_coding_gene 169887 170931 . - . ID=Phyra81901;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000037;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 169887 170931 . - . ID=Phyra81901;Parent=Phyra81901;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 169887 170751 . - 0 ID=Phyra81901;Parent=Phyra81901;rank=2 scaffold_65 . exon 169887 170751 . - . ID=Phyra81901.2;Parent=Phyra81901;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 . CDS 170813 170931 . - 0 ID=Phyra81901;Parent=Phyra81901;rank=1 scaffold_65 . exon 170813 170931 . - . ID=Phyra81901.1;Parent=Phyra81901;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 ensembl protein_coding_gene 171247 172527 . - . ID=Phyra81902;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000038;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 171247 172527 . - . ID=Phyra81902;Parent=Phyra81902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 171247 172527 . - 0 ID=Phyra81902;Parent=Phyra81902;rank=1 scaffold_65 . exon 171247 172527 . - . ID=Phyra81902.1;Parent=Phyra81902;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 173917 175398 . - . ID=Phyra81903;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000039;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 173917 175398 . - . ID=Phyra81903;Parent=Phyra81903;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 173917 175398 . - 0 ID=Phyra81903;Parent=Phyra81903;rank=1 scaffold_65 . exon 173917 175398 . - . ID=Phyra81903.1;Parent=Phyra81903;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 176056 176814 . - . ID=Phyra81904;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000040;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 176056 176814 . - . ID=Phyra81904;Parent=Phyra81904;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 176056 176814 . - 0 ID=Phyra81904;Parent=Phyra81904;rank=1 scaffold_65 . exon 176056 176814 . - . ID=Phyra81904.1;Parent=Phyra81904;constitutive=1;rank=1 scaffold_65 . biological_region 180018 180021 0.999 + . logic_name=eponine scaffold_65 . biological_region 180148 180152 0.999 - . logic_name=eponine scaffold_65 . repeat_region 184732 184739 . ? . description=dust scaffold_65 ensembl protein_coding_gene 178943 180226 . - . ID=Phyra81905;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000041;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 178943 180226 . - . ID=Phyra81905;Parent=Phyra81905;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 178943 180226 . - 0 ID=Phyra81905;Parent=Phyra81905;rank=1 scaffold_65 . exon 178943 180226 . - . ID=Phyra81905.1;Parent=Phyra81905;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 182262 183515 . + . ID=Phyra81906;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000042;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 182262 183515 . + . ID=Phyra81906;Parent=Phyra81906;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 182262 183515 . + 0 ID=Phyra81906;Parent=Phyra81906;rank=1 scaffold_65 . exon 182262 183515 . + . ID=Phyra81906.1;Parent=Phyra81906;constitutive=1;rank=1 scaffold_65 . repeat_region 189096 189140 . ? . description=trf scaffold_65 ensembl protein_coding_gene 187086 187550 . - . ID=Phyra81907;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000043;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 187086 187550 . - . ID=Phyra81907;Parent=Phyra81907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 187086 187550 . - 0 ID=Phyra81907;Parent=Phyra81907;rank=1 scaffold_65 . exon 187086 187550 . - . ID=Phyra81907.1;Parent=Phyra81907;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 188850 189314 . - . ID=Phyra81908;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000044;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 188850 189314 . - . ID=Phyra81908;Parent=Phyra81908;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 188850 189314 . - 0 ID=Phyra81908;Parent=Phyra81908;rank=1 scaffold_65 . exon 188850 189314 . - . ID=Phyra81908.1;Parent=Phyra81908;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 191577 194198 . + . ID=Phyra81909;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000045;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 191577 194198 . + . ID=Phyra81909;Parent=Phyra81909;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 191577 192254 . + 0 ID=Phyra81909;Parent=Phyra81909;rank=1 scaffold_65 . exon 191577 192254 . + . ID=Phyra81909.1;Parent=Phyra81909;constitutive=1;rank=1 scaffold_65 . CDS 192275 192645 . + 0 ID=Phyra81909;Parent=Phyra81909;rank=2 scaffold_65 . exon 192275 192645 . + . ID=Phyra81909.2;Parent=Phyra81909;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_65 . CDS 192665 192911 . + 0 ID=Phyra81909;Parent=Phyra81909;rank=3 scaffold_65 . exon 192665 192911 . + . ID=Phyra81909.3;Parent=Phyra81909;constitutive=1;ensembl_phase=2;rank=3 scaffold_65 . CDS 192972 194198 . + 0 ID=Phyra81909;Parent=Phyra81909;rank=4 scaffold_65 . exon 192972 194198 . + . ID=Phyra81909.4;Parent=Phyra81909;constitutive=1;rank=4 scaffold_65 . repeat_region 196973 200085 . ? . description=dust scaffold_65 . biological_region 201019 201024 0.999 + . logic_name=eponine scaffold_65 . biological_region 202277 202280 0.999 + . logic_name=eponine scaffold_65 . repeat_region 202449 206430 . ? . description=dust scaffold_65 ensembl protein_coding_gene 210976 212050 . - . ID=Phyra81910;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000046;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 210976 212050 . - . ID=Phyra81910;Parent=Phyra81910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 210976 211035 . - 0 ID=Phyra81910;Parent=Phyra81910;rank=2 scaffold_65 . exon 210976 211035 . - . ID=Phyra81910.2;Parent=Phyra81910;constitutive=1;rank=2 scaffold_65 . CDS 211097 212050 . - 0 ID=Phyra81910;Parent=Phyra81910;rank=1 scaffold_65 . exon 211097 212050 . - . ID=Phyra81910.1;Parent=Phyra81910;constitutive=1;rank=1 scaffold_65 . repeat_region 219064 219087 . ? . description=trf scaffold_65 . repeat_region 219064 219087 . ? . description=dust scaffold_65 . repeat_region 219089 219138 . ? . description=dust scaffold_65 . biological_region 225473 225474 0.999 - . logic_name=eponine scaffold_65 ensembl protein_coding_gene 219460 219948 . - . ID=Phyra81911;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000047;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 219460 219948 . - . ID=Phyra81911;Parent=Phyra81911;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 219460 219948 . - 0 ID=Phyra81911;Parent=Phyra81911;rank=1 scaffold_65 . exon 219460 219948 . - . ID=Phyra81911.1;Parent=Phyra81911;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 225333 226929 . + . ID=Phyra81912;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000048;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 225333 226929 . + . ID=Phyra81912;Parent=Phyra81912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 225333 226745 . + 0 ID=Phyra81912;Parent=Phyra81912;rank=1 scaffold_65 . exon 225333 226745 . + . ID=Phyra81912.1;Parent=Phyra81912;constitutive=1;rank=1 scaffold_65 . CDS 226819 226929 . + 0 ID=Phyra81912;Parent=Phyra81912;rank=2 scaffold_65 . exon 226819 226929 . + . ID=Phyra81912.2;Parent=Phyra81912;constitutive=1;rank=2 scaffold_65 ensembl protein_coding_gene 228811 230560 . - . ID=Phyra81913;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000049;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 228811 230560 . - . ID=Phyra81913;Parent=Phyra81913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 228811 228853 . - 0 ID=Phyra81913;Parent=Phyra81913;rank=3 scaffold_65 . exon 228811 228853 . - . ID=Phyra81913.3;Parent=Phyra81913;constitutive=1;ensembl_phase=2;rank=3 scaffold_65 . CDS 228897 228978 . - 0 ID=Phyra81913;Parent=Phyra81913;rank=2 scaffold_65 . exon 228897 228978 . - . ID=Phyra81913.2;Parent=Phyra81913;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_65 . CDS 229009 230560 . - 0 ID=Phyra81913;Parent=Phyra81913;rank=1 scaffold_65 . exon 229009 230560 . - . ID=Phyra81913.1;Parent=Phyra81913;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 ensembl protein_coding_gene 231191 232861 . + . ID=Phyra81914;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000050;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 231191 232861 . + . ID=Phyra81914;Parent=Phyra81914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 231191 232861 . + 0 ID=Phyra81914;Parent=Phyra81914;rank=1 scaffold_65 . exon 231191 232861 . + . ID=Phyra81914.1;Parent=Phyra81914;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 233191 235452 . - . ID=Phyra81915;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000051;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 233191 235452 . - . ID=Phyra81915;Parent=Phyra81915;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 233191 235452 . - 0 ID=Phyra81915;Parent=Phyra81915;rank=1 scaffold_65 . exon 233191 235452 . - . ID=Phyra81915.1;Parent=Phyra81915;constitutive=1;rank=1 scaffold_65 . repeat_region 236672 236702 . ? . description=trf scaffold_65 . biological_region 241367 241369 0.999 - . logic_name=eponine scaffold_65 . biological_region 245361 245363 0.999 - . logic_name=eponine scaffold_65 ensembl protein_coding_gene 238173 241245 . + . ID=Phyra81916;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000052;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 238173 241245 . + . ID=Phyra81916;Parent=Phyra81916;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 238173 238231 . + 0 ID=Phyra81916;Parent=Phyra81916;rank=1 scaffold_65 . exon 238173 238231 . + . ID=Phyra81916.1;Parent=Phyra81916;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 238292 238355 . + 0 ID=Phyra81916;Parent=Phyra81916;rank=2 scaffold_65 . exon 238292 238355 . + . ID=Phyra81916.2;Parent=Phyra81916;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 . CDS 238431 240029 . + 0 ID=Phyra81916;Parent=Phyra81916;rank=3 scaffold_65 . exon 238431 240029 . + . ID=Phyra81916.3;Parent=Phyra81916;constitutive=1;rank=3 scaffold_65 . CDS 240108 240355 . + 0 ID=Phyra81916;Parent=Phyra81916;rank=4 scaffold_65 . exon 240108 240355 . + . ID=Phyra81916.4;Parent=Phyra81916;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_65 . CDS 240435 240636 . + 0 ID=Phyra81916;Parent=Phyra81916;rank=5 scaffold_65 . exon 240435 240636 . + . ID=Phyra81916.5;Parent=Phyra81916;constitutive=1;ensembl_phase=2;rank=5 scaffold_65 . CDS 240699 240824 . + 0 ID=Phyra81916;Parent=Phyra81916;rank=6 scaffold_65 . exon 240699 240824 . + . ID=Phyra81916.6;Parent=Phyra81916;constitutive=1;rank=6 scaffold_65 . CDS 240886 241245 . + 0 ID=Phyra81916;Parent=Phyra81916;rank=7 scaffold_65 . exon 240886 241245 . + . ID=Phyra81916.7;Parent=Phyra81916;constitutive=1;rank=7 scaffold_65 ensembl protein_coding_gene 241467 245620 . + . ID=Phyra81917;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000053;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 241467 245620 . + . ID=Phyra81917;Parent=Phyra81917;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 241467 242170 . + 0 ID=Phyra81917;Parent=Phyra81917;rank=1 scaffold_65 . exon 241467 242170 . + . ID=Phyra81917.1;Parent=Phyra81917;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 242236 242313 . + 0 ID=Phyra81917;Parent=Phyra81917;rank=2 scaffold_65 . exon 242236 242313 . + . ID=Phyra81917.2;Parent=Phyra81917;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_65 . CDS 242390 243037 . + 0 ID=Phyra81917;Parent=Phyra81917;rank=3 scaffold_65 . exon 242390 243037 . + . ID=Phyra81917.3;Parent=Phyra81917;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_65 . CDS 243111 245004 . + 0 ID=Phyra81917;Parent=Phyra81917;rank=4 scaffold_65 . exon 243111 245004 . + . ID=Phyra81917.4;Parent=Phyra81917;constitutive=1;ensembl_phase=2;rank=4 scaffold_65 . CDS 245069 245620 . + 0 ID=Phyra81917;Parent=Phyra81917;rank=5 scaffold_65 . exon 245069 245620 . + . ID=Phyra81917.5;Parent=Phyra81917;constitutive=1;rank=5 scaffold_65 . repeat_region 246582 246841 . - . description=Sola3-2_PS scaffold_65 . repeat_region 248494 248693 . + . description=Polinton-1_PI scaffold_65 . repeat_region 252839 252847 . ? . description=dust scaffold_65 ensembl protein_coding_gene 246470 248107 . + . ID=Phyra81918;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000054;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 246470 248107 . + . ID=Phyra81918;Parent=Phyra81918;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 246470 248107 . + 0 ID=Phyra81918;Parent=Phyra81918;rank=1 scaffold_65 . exon 246470 248107 . + . ID=Phyra81918.1;Parent=Phyra81918;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 249642 251264 . - . ID=Phyra81919;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000055;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 249642 251264 . - . ID=Phyra81919;Parent=Phyra81919;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 249642 251264 . - 0 ID=Phyra81919;Parent=Phyra81919;rank=1 scaffold_65 . exon 249642 251264 . - . ID=Phyra81919.1;Parent=Phyra81919;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 251512 252302 . + . ID=Phyra81920;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000056;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 251512 252302 . + . ID=Phyra81920;Parent=Phyra81920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 251512 251693 . + 0 ID=Phyra81920;Parent=Phyra81920;rank=1 scaffold_65 . exon 251512 251693 . + . ID=Phyra81920.1;Parent=Phyra81920;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 251756 252302 . + 0 ID=Phyra81920;Parent=Phyra81920;rank=2 scaffold_65 . exon 251756 252302 . + . ID=Phyra81920.2;Parent=Phyra81920;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 . repeat_region 258308 258334 . ? . description=trf scaffold_65 ensembl pseudogene 261550 263897 . + . ID=Phyra52019;biotype=pseudogene;external_name=gwEuk.65.10.1;logic_name=jgi_phyra1 scaffold_65 ensembl pseudogene 261550 263897 . + . ID=Phyra52019;Parent=Phyra52019;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_65 . exon 261550 263897 . + . ID=Phyra52019.1;Parent=Phyra52019;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . repeat_region 268338 268352 . ? . description=dust scaffold_65 . repeat_region 268684 268696 . ? . description=dust scaffold_65 . repeat_region 269056 269499 . ? . description=dust scaffold_65 . repeat_region 272393 272400 . ? . description=dust scaffold_65 . repeat_region 274841 275137 . ? . description=dust scaffold_65 ensembl protein_coding_gene 276705 278321 . + . ID=Phyra81922;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000058;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 276705 278321 . + . ID=Phyra81922;Parent=Phyra81922;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 276705 278321 . + 0 ID=Phyra81922;Parent=Phyra81922;rank=1 scaffold_65 . exon 276705 278321 . + . ID=Phyra81922.1;Parent=Phyra81922;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 284254 287218 . - . ID=Phyra81923;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_65000059;logic_name=jgi_phyra1 scaffold_65 ensembl transcript 284254 287218 . - . ID=Phyra81923;Parent=Phyra81923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_65 . CDS 284254 284605 . - 0 ID=Phyra81923;Parent=Phyra81923;rank=3 scaffold_65 . exon 284254 284605 . - . ID=Phyra81923.3;Parent=Phyra81923;constitutive=1;ensembl_phase=2;rank=3 scaffold_65 . CDS 284940 286426 . - 0 ID=Phyra81923;Parent=Phyra81923;rank=2 scaffold_65 . CDS 286490 287218 . - 0 ID=Phyra81923;Parent=Phyra81923;rank=1 scaffold_65 . repeat_region 287912 287964 . ? . description=trf scaffold_65 . repeat_region 287912 287968 . ? . description=trf scaffold_65 . repeat_region 288072 291688 . ? . description=dust scaffold_65 . repeat_region 292170 292177 . ? . description=dust scaffold_65 . repeat_region 293346 293355 . ? . description=dust scaffold_65 . exon 284940 286426 . - . ID=Phyra81923.2;Parent=Phyra81923;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_65 . exon 286490 287218 . - . ID=Phyra81923.1;Parent=Phyra81923;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_57 1 298837 scaffold_57 . repeat_region 1867 1916 . ? . description=dust scaffold_57 . repeat_region 2725 2775 . ? . description=trf scaffold_57 . biological_region 5189 5193 0.999 + . logic_name=eponine scaffold_57 . biological_region 7268 7272 0.999 - . logic_name=eponine scaffold_57 ensembl tRNA_gene 2985 3056 . + . ID=EPrPRAG00000000009;biotype=tRNA;description=tRNA-Thr for anticodon UGU [Source:TRNASCAN_SE%3BAcc:tRNA-Thr];external_name=tRNA-Thr;logic_name=ncrna_eg scaffold_57 ensembl transcript 2985 3056 . + . ID=EPrPRAT00000000009;Parent=EPrPRAG00000000009;biotype=tRNA;logic_name=ncrna_eg scaffold_57 . exon 2985 3056 . + . ID=EPrPRAE00000000009;Parent=EPrPRAT00000000009;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 4452 4930 . - . ID=Phyra81149;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000001;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 4452 4930 . - . ID=Phyra81149;Parent=Phyra81149;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 4452 4698 . - 0 ID=Phyra81149;Parent=Phyra81149;rank=2 scaffold_57 . exon 4452 4698 . - . ID=Phyra81149.2;Parent=Phyra81149;constitutive=1;ensembl_phase=2;rank=2 scaffold_57 . CDS 4803 4930 . - 0 ID=Phyra81149;Parent=Phyra81149;rank=1 scaffold_57 . exon 4803 4930 . - . ID=Phyra81149.1;Parent=Phyra81149;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 ensembl protein_coding_gene 5954 7466 . + . ID=Phyra81150;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000002;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 5954 7466 . + . ID=Phyra81150;Parent=Phyra81150;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 5954 6202 . + 0 ID=Phyra81150;Parent=Phyra81150;rank=1 scaffold_57 . exon 5954 6202 . + . ID=Phyra81150.1;Parent=Phyra81150;constitutive=1;rank=1 scaffold_57 . CDS 6273 7466 . + 0 ID=Phyra81150;Parent=Phyra81150;rank=2 scaffold_57 . exon 6273 7466 . + . ID=Phyra81150.2;Parent=Phyra81150;constitutive=1;rank=2 scaffold_57 ensembl protein_coding_gene 9272 10969 . + . ID=Phyra81151;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000003;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 9272 10969 . + . ID=Phyra81151;Parent=Phyra81151;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 9272 10969 . + 0 ID=Phyra81151;Parent=Phyra81151;rank=1 scaffold_57 . exon 9272 10969 . + . ID=Phyra81151.1;Parent=Phyra81151;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 15242 15953 . + . ID=Phyra71873;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_57000001;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 15242 15953 . + . ID=Phyra71873;Parent=Phyra71873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 15242 15625 . + 0 ID=Phyra71873;Parent=Phyra71873;rank=1 scaffold_57 . exon 15242 15625 . + . ID=Phyra71873.1;Parent=Phyra71873;constitutive=1;rank=1 scaffold_57 . CDS 15765 15953 . + 0 ID=Phyra71873;Parent=Phyra71873;rank=2 scaffold_57 . exon 15765 15953 . + . ID=Phyra71873.2;Parent=Phyra71873;constitutive=1;rank=2 scaffold_57 ensembl protein_coding_gene 16860 18008 . + . ID=Phyra71874;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_57000002;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 16860 18008 . + . ID=Phyra71874;Parent=Phyra71874;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 16860 18008 . + 0 ID=Phyra71874;Parent=Phyra71874;rank=1 scaffold_57 . exon 16860 18008 . + . ID=Phyra71874.1;Parent=Phyra71874;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 11157 12941 . + . ID=Phyra81152;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000004;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 11157 12941 . + . ID=Phyra81152;Parent=Phyra81152;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 11157 12941 . + 0 ID=Phyra81152;Parent=Phyra81152;rank=1 scaffold_57 . exon 11157 12941 . + . ID=Phyra81152.1;Parent=Phyra81152;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 13014 14530 . - . ID=Phyra81153;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000005;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 13014 14530 . - . ID=Phyra81153;Parent=Phyra81153;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 13014 14198 . - 0 ID=Phyra81153;Parent=Phyra81153;rank=2 scaffold_57 . exon 13014 14198 . - . ID=Phyra81153.2;Parent=Phyra81153;constitutive=1;rank=2 scaffold_57 . CDS 14264 14530 . - 0 ID=Phyra81153;Parent=Phyra81153;rank=1 scaffold_57 . exon 14264 14530 . - . ID=Phyra81153.1;Parent=Phyra81153;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 18137 18964 . - . ID=Phyra81156;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000008;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 18137 18964 . - . ID=Phyra81156;Parent=Phyra81156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 18137 18367 . - 0 ID=Phyra81156;Parent=Phyra81156;rank=2 scaffold_57 . exon 18137 18367 . - . ID=Phyra81156.2;Parent=Phyra81156;constitutive=1;rank=2 scaffold_57 . CDS 18437 18964 . - 0 ID=Phyra81156;Parent=Phyra81156;rank=1 scaffold_57 . exon 18437 18964 . - . ID=Phyra81156.1;Parent=Phyra81156;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 19114 22818 . + . ID=Phyra81157;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000009;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 19114 22818 . + . ID=Phyra81157;Parent=Phyra81157;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 19114 19177 . + 0 ID=Phyra81157;Parent=Phyra81157;rank=1 scaffold_57 . exon 19114 19177 . + . ID=Phyra81157.1;Parent=Phyra81157;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . CDS 19237 20923 . + 0 ID=Phyra81157;Parent=Phyra81157;rank=2 scaffold_57 . exon 19237 20923 . + . ID=Phyra81157.2;Parent=Phyra81157;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_57 . CDS 21040 21088 . + 0 ID=Phyra81157;Parent=Phyra81157;rank=3 scaffold_57 . CDS 21144 21476 . + 0 ID=Phyra81157;Parent=Phyra81157;rank=4 scaffold_57 . CDS 21729 22047 . + 0 ID=Phyra81157;Parent=Phyra81157;rank=5 scaffold_57 . CDS 22157 22818 . + 0 ID=Phyra81157;Parent=Phyra81157;rank=6 scaffold_57 . repeat_region 20743 20776 . ? . description=trf scaffold_57 . repeat_region 21854 21904 . ? . description=trf scaffold_57 . repeat_region 22092 22141 . ? . description=dust scaffold_57 . repeat_region 22581 22610 . ? . description=trf scaffold_57 . biological_region 23563 23564 0.999 - . logic_name=eponine scaffold_57 . biological_region 26624 26625 0.999 + . logic_name=eponine scaffold_57 . biological_region 26905 26905 0.999 + . logic_name=eponine scaffold_57 . biological_region 26908 26910 0.999 - . logic_name=eponine scaffold_57 . repeat_region 28112 28143 . ? . description=trf scaffold_57 . biological_region 28502 28509 0.999 + . logic_name=eponine scaffold_57 . biological_region 28515 28519 0.999 - . logic_name=eponine scaffold_57 . biological_region 28547 28559 0.999 + . logic_name=eponine scaffold_57 . biological_region 28588 28591 0.999 - . logic_name=eponine scaffold_57 . biological_region 28606 28614 0.999 - . logic_name=eponine scaffold_57 . biological_region 28633 28635 0.999 + . logic_name=eponine scaffold_57 . biological_region 28665 28667 0.999 + . logic_name=eponine scaffold_57 . biological_region 28790 28791 0.999 - . logic_name=eponine scaffold_57 . biological_region 29244 29244 0.999 - . logic_name=eponine scaffold_57 . biological_region 29249 29251 0.999 + . logic_name=eponine scaffold_57 . exon 21040 21088 . + . ID=Phyra81157.3;Parent=Phyra81157;constitutive=1;ensembl_phase=2;rank=3 scaffold_57 . exon 21144 21476 . + . ID=Phyra81157.4;Parent=Phyra81157;constitutive=1;rank=4 scaffold_57 . exon 21729 22047 . + . ID=Phyra81157.5;Parent=Phyra81157;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_57 . exon 22157 22818 . + . ID=Phyra81157.6;Parent=Phyra81157;constitutive=1;ensembl_phase=1;rank=6 scaffold_57 ensembl protein_coding_gene 23040 24357 . - . ID=Phyra81158;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000010;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 23040 24357 . - . ID=Phyra81158;Parent=Phyra81158;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 23040 23156 . - 0 ID=Phyra81158;Parent=Phyra81158;rank=2 scaffold_57 . exon 23040 23156 . - . ID=Phyra81158.2;Parent=Phyra81158;constitutive=1;rank=2 scaffold_57 . CDS 23218 24357 . - 0 ID=Phyra81158;Parent=Phyra81158;rank=1 scaffold_57 . exon 23218 24357 . - . ID=Phyra81158.1;Parent=Phyra81158;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 24565 26487 . + . ID=Phyra81159;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000011;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 24565 26487 . + . ID=Phyra81159;Parent=Phyra81159;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 24565 26487 . + 0 ID=Phyra81159;Parent=Phyra81159;rank=1 scaffold_57 . exon 24565 26487 . + . ID=Phyra81159.1;Parent=Phyra81159;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 26657 28761 . - . ID=Phyra81160;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000012;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 26657 28761 . - . ID=Phyra81160;Parent=Phyra81160;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 26657 26704 . - 0 ID=Phyra81160;Parent=Phyra81160;rank=4 scaffold_57 . exon 26657 26704 . - . ID=Phyra81160.4;Parent=Phyra81160;constitutive=1;rank=4 scaffold_57 . CDS 26767 27051 . - 0 ID=Phyra81160;Parent=Phyra81160;rank=3 scaffold_57 . exon 26767 27051 . - . ID=Phyra81160.3;Parent=Phyra81160;constitutive=1;rank=3 scaffold_57 . CDS 27182 27682 . - 0 ID=Phyra81160;Parent=Phyra81160;rank=2 scaffold_57 . exon 27182 27682 . - . ID=Phyra81160.2;Parent=Phyra81160;constitutive=1;rank=2 scaffold_57 . CDS 27868 28761 . - 0 ID=Phyra81160;Parent=Phyra81160;rank=1 scaffold_57 . exon 27868 28761 . - . ID=Phyra81160.1;Parent=Phyra81160;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 29040 30608 . - . ID=Phyra81161;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000013;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 29040 30608 . - . ID=Phyra81161;Parent=Phyra81161;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 29040 30608 . - 0 ID=Phyra81161;Parent=Phyra81161;rank=1 scaffold_57 . exon 29040 30608 . - . ID=Phyra81161.1;Parent=Phyra81161;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 39796 40646 . + . ID=Phyra71875;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_57000003;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 39796 40646 . + . ID=Phyra71875;Parent=Phyra71875;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 39796 39892 . + 0 ID=Phyra71875;Parent=Phyra71875;rank=1 scaffold_57 . exon 39796 39892 . + . ID=Phyra71875.1;Parent=Phyra71875;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . CDS 39951 40216 . + 0 ID=Phyra71875;Parent=Phyra71875;rank=2 scaffold_57 . CDS 40284 40646 . + 0 ID=Phyra71875;Parent=Phyra71875;rank=3 scaffold_57 ensembl protein_coding_gene 32803 33972 . + . ID=Phyra81162;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000014;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 32803 33972 . + . ID=Phyra81162;Parent=Phyra81162;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 32803 33972 . + 0 ID=Phyra81162;Parent=Phyra81162;rank=1 scaffold_57 . exon 32803 33972 . + . ID=Phyra81162.1;Parent=Phyra81162;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 34467 37836 . - . ID=Phyra81163;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000015;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 34467 37836 . - . ID=Phyra81163;Parent=Phyra81163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 34467 34535 . - 0 ID=Phyra81163;Parent=Phyra81163;rank=2 scaffold_57 . exon 34467 34535 . - . ID=Phyra81163.2;Parent=Phyra81163;constitutive=1;rank=2 scaffold_57 . CDS 34573 37836 . - 0 ID=Phyra81163;Parent=Phyra81163;rank=1 scaffold_57 . exon 34573 37836 . - . ID=Phyra81163.1;Parent=Phyra81163;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 38216 39381 . + . ID=Phyra81164;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000016;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 38216 39381 . + . ID=Phyra81164;Parent=Phyra81164;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 38216 38284 . + 0 ID=Phyra81164;Parent=Phyra81164;rank=1 scaffold_57 . exon 38216 38284 . + . ID=Phyra81164.1;Parent=Phyra81164;constitutive=1;rank=1 scaffold_57 . CDS 38410 38537 . + 0 ID=Phyra81164;Parent=Phyra81164;rank=2 scaffold_57 . exon 38410 38537 . + . ID=Phyra81164.2;Parent=Phyra81164;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_57 . CDS 38603 38670 . + 0 ID=Phyra81164;Parent=Phyra81164;rank=3 scaffold_57 . exon 38603 38670 . + . ID=Phyra81164.3;Parent=Phyra81164;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_57 . CDS 38752 38786 . + 0 ID=Phyra81164;Parent=Phyra81164;rank=4 scaffold_57 . exon 38752 38786 . + . ID=Phyra81164.4;Parent=Phyra81164;constitutive=1;ensembl_phase=1;rank=4 scaffold_57 . CDS 38880 38993 . + 0 ID=Phyra81164;Parent=Phyra81164;rank=5 scaffold_57 . exon 38880 38993 . + . ID=Phyra81164.5;Parent=Phyra81164;constitutive=1;rank=5 scaffold_57 . CDS 39075 39123 . + 0 ID=Phyra81164;Parent=Phyra81164;rank=6 scaffold_57 . exon 39075 39123 . + . ID=Phyra81164.6;Parent=Phyra81164;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_57 . CDS 39245 39381 . + 0 ID=Phyra81164;Parent=Phyra81164;rank=7 scaffold_57 . exon 39245 39381 . + . ID=Phyra81164.7;Parent=Phyra81164;constitutive=1;ensembl_phase=1;rank=7 scaffold_57 . repeat_region 41503 41543 . ? . description=trf scaffold_57 . repeat_region 42452 42518 . ? . description=trf scaffold_57 . biological_region 44516 44521 0.999 - . logic_name=eponine scaffold_57 . biological_region 44954 44960 0.999 + . logic_name=eponine scaffold_57 . biological_region 45567 45571 0.999 - . logic_name=eponine scaffold_57 . biological_region 45763 45764 0.999 + . logic_name=eponine scaffold_57 . biological_region 45877 45883 0.999 + . logic_name=eponine scaffold_57 . biological_region 45967 45972 0.999 - . logic_name=eponine scaffold_57 . biological_region 45972 45974 0.999 + . logic_name=eponine scaffold_57 . biological_region 45998 46001 0.999 - . logic_name=eponine scaffold_57 . repeat_region 47802 47821 . ? . description=trf scaffold_57 . exon 39951 40216 . + . ID=Phyra71875.2;Parent=Phyra71875;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 . exon 40284 40646 . + . ID=Phyra71875.3;Parent=Phyra71875;constitutive=1;rank=3 scaffold_57 ensembl protein_coding_gene 41084 41890 . + . ID=Phyra81166;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000018;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 41084 41890 . + . ID=Phyra81166;Parent=Phyra81166;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 41084 41558 . + 0 ID=Phyra81166;Parent=Phyra81166;rank=1 scaffold_57 . exon 41084 41558 . + . ID=Phyra81166.1;Parent=Phyra81166;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . CDS 41679 41890 . + 0 ID=Phyra81166;Parent=Phyra81166;rank=2 scaffold_57 . exon 41679 41890 . + . ID=Phyra81166.2;Parent=Phyra81166;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 ensembl protein_coding_gene 42121 43075 . - . ID=Phyra81167;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000019;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 42121 43075 . - . ID=Phyra81167;Parent=Phyra81167;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 42121 42992 . - 0 ID=Phyra81167;Parent=Phyra81167;rank=2 scaffold_57 . exon 42121 42992 . - . ID=Phyra81167.2;Parent=Phyra81167;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 . CDS 43012 43075 . - 0 ID=Phyra81167;Parent=Phyra81167;rank=1 scaffold_57 . exon 43012 43075 . - . ID=Phyra81167.1;Parent=Phyra81167;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 ensembl protein_coding_gene 44203 46056 . - . ID=Phyra81168;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000020;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 44203 46056 . - . ID=Phyra81168;Parent=Phyra81168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 44203 46056 . - 0 ID=Phyra81168;Parent=Phyra81168;rank=1 scaffold_57 . exon 44203 46056 . - . ID=Phyra81168.1;Parent=Phyra81168;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 46682 48001 . + . ID=Phyra81169;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000021;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 46682 48001 . + . ID=Phyra81169;Parent=Phyra81169;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 46682 48001 . + 0 ID=Phyra81169;Parent=Phyra81169;rank=1 scaffold_57 . exon 46682 48001 . + . ID=Phyra81169.1;Parent=Phyra81169;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 48284 50452 . - . ID=Phyra81170;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000022;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 48284 50452 . - . ID=Phyra81170;Parent=Phyra81170;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 48284 50452 . - 0 ID=Phyra81170;Parent=Phyra81170;rank=1 scaffold_57 . exon 48284 50452 . - . ID=Phyra81170.1;Parent=Phyra81170;constitutive=1;rank=1 scaffold_57 . repeat_region 56042 56417 . ? . description=dust scaffold_57 ensembl protein_coding_gene 51817 52575 . - . ID=Phyra50941;biotype=protein_coding;external_name=gwEuk.57.73.1;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 51817 52575 . - . ID=Phyra50941;Parent=Phyra50941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 51817 52074 . - 0 ID=Phyra50941;Parent=Phyra50941;rank=3 scaffold_57 . exon 51817 52074 . - . ID=Phyra50941.3;Parent=Phyra50941;constitutive=1;rank=3 scaffold_57 . CDS 52126 52200 . - 0 ID=Phyra50941;Parent=Phyra50941;rank=2 scaffold_57 . exon 52126 52200 . - . ID=Phyra50941.2;Parent=Phyra50941;constitutive=1;rank=2 scaffold_57 . CDS 52261 52575 . - 0 ID=Phyra50941;Parent=Phyra50941;rank=1 scaffold_57 . exon 52261 52575 . - . ID=Phyra50941.1;Parent=Phyra50941;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 53614 54949 . - . ID=Phyra71876;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_57000004;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 53614 54949 . - . ID=Phyra71876;Parent=Phyra71876;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 53614 53802 . - 0 ID=Phyra71876;Parent=Phyra71876;rank=4 scaffold_57 . exon 53614 53802 . - . ID=Phyra71876.4;Parent=Phyra71876;constitutive=1;rank=4 scaffold_57 . CDS 53873 53975 . - 0 ID=Phyra71876;Parent=Phyra71876;rank=3 scaffold_57 . exon 53873 53975 . - . ID=Phyra71876.3;Parent=Phyra71876;constitutive=1;ensembl_phase=2;rank=3 scaffold_57 . CDS 54063 54586 . - 0 ID=Phyra71876;Parent=Phyra71876;rank=2 scaffold_57 . exon 54063 54586 . - . ID=Phyra71876.2;Parent=Phyra71876;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_57 . CDS 54641 54949 . - 0 ID=Phyra71876;Parent=Phyra71876;rank=1 scaffold_57 . exon 54641 54949 . - . ID=Phyra71876.1;Parent=Phyra71876;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 56867 57719 . - . ID=Phyra71877;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_57000005;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 56867 57719 . - . ID=Phyra71877;Parent=Phyra71877;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 56867 57290 . - 0 ID=Phyra71877;Parent=Phyra71877;rank=4 scaffold_57 . exon 56867 57290 . - . ID=Phyra71877.4;Parent=Phyra71877;constitutive=1;ensembl_phase=2;rank=4 scaffold_57 . CDS 57359 57447 . - 0 ID=Phyra71877;Parent=Phyra71877;rank=3 scaffold_57 . exon 57359 57447 . - . ID=Phyra71877.3;Parent=Phyra71877;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_57 . CDS 57630 57658 . - 0 ID=Phyra71877;Parent=Phyra71877;rank=2 scaffold_57 . exon 57630 57658 . - . ID=Phyra71877.2;Parent=Phyra71877;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 . CDS 57704 57719 . - 0 ID=Phyra71877;Parent=Phyra71877;rank=1 scaffold_57 . exon 57704 57719 . - . ID=Phyra71877.1;Parent=Phyra71877;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 ensembl protein_coding_gene 50579 51574 . + . ID=Phyra81171;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000023;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 50579 51574 . + . ID=Phyra81171;Parent=Phyra81171;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 50579 50647 . + 0 ID=Phyra81171;Parent=Phyra81171;rank=1 scaffold_57 . exon 50579 50647 . + . ID=Phyra81171.1;Parent=Phyra81171;constitutive=1;rank=1 scaffold_57 . CDS 50690 51367 . + 0 ID=Phyra81171;Parent=Phyra81171;rank=2 scaffold_57 . exon 50690 51367 . + . ID=Phyra81171.2;Parent=Phyra81171;constitutive=1;rank=2 scaffold_57 . CDS 51422 51574 . + 0 ID=Phyra81171;Parent=Phyra81171;rank=3 scaffold_57 . exon 51422 51574 . + . ID=Phyra81171.3;Parent=Phyra81171;constitutive=1;rank=3 scaffold_57 ensembl protein_coding_gene 52827 53459 . - . ID=Phyra81173;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000025;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 52827 53459 . - . ID=Phyra81173;Parent=Phyra81173;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 52827 53459 . - 0 ID=Phyra81173;Parent=Phyra81173;rank=1 scaffold_57 . exon 52827 53459 . - . ID=Phyra81173.1;Parent=Phyra81173;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 55581 56739 . + . ID=Phyra95918;biotype=protein_coding;external_name=C_scaffold_57000002;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 55581 56739 . + . ID=Phyra95918;Parent=Phyra95918;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 55581 56032 . + 0 ID=Phyra95918;Parent=Phyra95918;rank=1 scaffold_57 . exon 55581 56032 . + . ID=Phyra95918.1;Parent=Phyra95918;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . CDS 56502 56739 . + 0 ID=Phyra95918;Parent=Phyra95918;rank=2 scaffold_57 . exon 56502 56739 . + . ID=Phyra95918.2;Parent=Phyra95918;constitutive=1;ensembl_phase=2;rank=2 scaffold_57 . repeat_region 60178 60241 . ? . description=trf scaffold_57 . repeat_region 64218 64284 . ? . description=trf scaffold_57 . repeat_region 67493 67536 . ? . description=trf scaffold_57 . repeat_region 70233 70240 . ? . description=dust scaffold_57 . repeat_region 74832 74844 . ? . description=dust scaffold_57 . biological_region 75926 75926 0.999 + . logic_name=eponine scaffold_57 . repeat_region 76038 76046 . ? . description=dust scaffold_57 ensembl protein_coding_gene 79202 80806 . + . ID=Phyra81177;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000029;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 79202 80806 . + . ID=Phyra81177;Parent=Phyra81177;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 79202 80806 . + 0 ID=Phyra81177;Parent=Phyra81177;rank=1 scaffold_57 . exon 79202 80806 . + . ID=Phyra81177.1;Parent=Phyra81177;constitutive=1;rank=1 scaffold_57 . repeat_region 83677 83717 . ? . description=trf scaffold_57 ensembl protein_coding_gene 82220 83361 . - . ID=Phyra81178;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000030;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 82220 83361 . - . ID=Phyra81178;Parent=Phyra81178;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 82220 82251 . - 0 ID=Phyra81178;Parent=Phyra81178;rank=2 scaffold_57 . exon 82220 82251 . - . ID=Phyra81178.2;Parent=Phyra81178;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 . CDS 82359 83361 . - 0 ID=Phyra81178;Parent=Phyra81178;rank=1 scaffold_57 . exon 82359 83361 . - . ID=Phyra81178.1;Parent=Phyra81178;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . repeat_region 90472 91605 . ? . description=dust scaffold_57 . repeat_region 91612 93307 . - . description=Polinton-1_PI scaffold_57 . repeat_region 93462 93540 . - . description=Polinton-1_PI scaffold_57 . repeat_region 96017 96066 . ? . description=dust scaffold_57 . repeat_region 96922 98251 . ? . description=dust scaffold_57 ensembl protein_coding_gene 98424 99558 . + . ID=Phyra81179;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000031;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 98424 99558 . + . ID=Phyra81179;Parent=Phyra81179;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 98424 99507 . + 0 ID=Phyra81179;Parent=Phyra81179;rank=1 scaffold_57 . exon 98424 99507 . + . ID=Phyra81179.1;Parent=Phyra81179;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . CDS 99533 99558 . + 0 ID=Phyra81179;Parent=Phyra81179;rank=2 scaffold_57 . exon 99533 99558 . + . ID=Phyra81179.2;Parent=Phyra81179;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 . repeat_region 102567 102600 . ? . description=trf scaffold_57 ensembl protein_coding_gene 103823 104936 . + . ID=Phyra81180;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000032;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 103823 104936 . + . ID=Phyra81180;Parent=Phyra81180;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 103823 104767 . + 0 ID=Phyra81180;Parent=Phyra81180;rank=1 scaffold_57 . exon 103823 104767 . + . ID=Phyra81180.1;Parent=Phyra81180;constitutive=1;rank=1 scaffold_57 . CDS 104910 104936 . + 0 ID=Phyra81180;Parent=Phyra81180;rank=2 scaffold_57 . exon 104910 104936 . + . ID=Phyra81180.2;Parent=Phyra81180;constitutive=1;rank=2 scaffold_57 ensembl protein_coding_gene 107805 108499 . + . ID=Phyra81181;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000033;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 107805 108499 . + . ID=Phyra81181;Parent=Phyra81181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 107805 108308 . + 0 ID=Phyra81181;Parent=Phyra81181;rank=1 scaffold_57 . exon 107805 108308 . + . ID=Phyra81181.1;Parent=Phyra81181;constitutive=1;rank=1 scaffold_57 . CDS 108437 108499 . + 0 ID=Phyra81181;Parent=Phyra81181;rank=2 scaffold_57 . exon 108437 108499 . + . ID=Phyra81181.2;Parent=Phyra81181;constitutive=1;rank=2 scaffold_57 . repeat_region 116394 116401 . ? . description=dust scaffold_57 ensembl protein_coding_gene 119418 119837 . - . ID=Phyra81182;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000034;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 119418 119837 . - . ID=Phyra81182;Parent=Phyra81182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 119418 119837 . - 0 ID=Phyra81182;Parent=Phyra81182;rank=1 scaffold_57 . exon 119418 119837 . - . ID=Phyra81182.1;Parent=Phyra81182;constitutive=1;rank=1 scaffold_57 . repeat_region 125365 125397 . ? . description=trf scaffold_57 . repeat_region 127157 127187 . ? . description=trf scaffold_57 ensembl protein_coding_gene 121379 125357 . - . ID=Phyra81183;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000035;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 121379 125357 . - . ID=Phyra81183;Parent=Phyra81183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 121379 121559 . - 0 ID=Phyra81183;Parent=Phyra81183;rank=7 scaffold_57 . exon 121379 121559 . - . ID=Phyra81183.7;Parent=Phyra81183;constitutive=1;ensembl_phase=2;rank=7 scaffold_57 . CDS 121589 121828 . - 0 ID=Phyra81183;Parent=Phyra81183;rank=6 scaffold_57 . exon 121589 121828 . - . ID=Phyra81183.6;Parent=Phyra81183;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_57 . CDS 122030 122462 . - 0 ID=Phyra81183;Parent=Phyra81183;rank=5 scaffold_57 . exon 122030 122462 . - . ID=Phyra81183.5;Parent=Phyra81183;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_57 . CDS 122615 123394 . - 0 ID=Phyra81183;Parent=Phyra81183;rank=4 scaffold_57 . exon 122615 123394 . - . ID=Phyra81183.4;Parent=Phyra81183;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_57 . CDS 123537 124562 . - 0 ID=Phyra81183;Parent=Phyra81183;rank=3 scaffold_57 . exon 123537 124562 . - . ID=Phyra81183.3;Parent=Phyra81183;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_57 . CDS 124590 125219 . - 0 ID=Phyra81183;Parent=Phyra81183;rank=2 scaffold_57 . exon 124590 125219 . - . ID=Phyra81183.2;Parent=Phyra81183;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_57 . CDS 125258 125357 . - 0 ID=Phyra81183;Parent=Phyra81183;rank=1 scaffold_57 . exon 125258 125357 . - . ID=Phyra81183.1;Parent=Phyra81183;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 ensembl protein_coding_gene 125854 126378 . - . ID=Phyra81184;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000036;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 125854 126378 . - . ID=Phyra81184;Parent=Phyra81184;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 125854 126378 . - 0 ID=Phyra81184;Parent=Phyra81184;rank=1 scaffold_57 . exon 125854 126378 . - . ID=Phyra81184.1;Parent=Phyra81184;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 129019 131061 . + . ID=Phyra81185;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000037;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 129019 131061 . + . ID=Phyra81185;Parent=Phyra81185;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 129019 131061 . + 0 ID=Phyra81185;Parent=Phyra81185;rank=1 scaffold_57 . exon 129019 131061 . + . ID=Phyra81185.1;Parent=Phyra81185;constitutive=1;rank=1 scaffold_57 . biological_region 134123 134124 0.999 + . logic_name=eponine scaffold_57 . repeat_region 135599 135626 . ? . description=dust scaffold_57 . biological_region 136393 136397 0.999 - . logic_name=eponine scaffold_57 . biological_region 138069 138069 0.999 + . logic_name=eponine scaffold_57 . biological_region 138453 138454 0.999 - . logic_name=eponine scaffold_57 . biological_region 138535 138537 0.999 - . logic_name=eponine scaffold_57 . biological_region 139366 139368 0.999 + . logic_name=eponine scaffold_57 . biological_region 139429 139432 0.999 - . logic_name=eponine scaffold_57 ensembl protein_coding_gene 131175 132154 . + . ID=Phyra50959;biotype=protein_coding;external_name=gwEuk.57.91.1;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 131175 132154 . + . ID=Phyra50959;Parent=Phyra50959;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 131175 131264 . + 0 ID=Phyra50959;Parent=Phyra50959;rank=1 scaffold_57 . exon 131175 131264 . + . ID=Phyra50959.1;Parent=Phyra50959;constitutive=1;rank=1 scaffold_57 . CDS 131328 131396 . + 0 ID=Phyra50959;Parent=Phyra50959;rank=2 scaffold_57 . exon 131328 131396 . + . ID=Phyra50959.2;Parent=Phyra50959;constitutive=1;rank=2 scaffold_57 . CDS 131457 131810 . + 0 ID=Phyra50959;Parent=Phyra50959;rank=3 scaffold_57 . exon 131457 131810 . + . ID=Phyra50959.3;Parent=Phyra50959;constitutive=1;rank=3 scaffold_57 . CDS 131957 132154 . + 0 ID=Phyra50959;Parent=Phyra50959;rank=4 scaffold_57 . exon 131957 132154 . + . ID=Phyra50959.4;Parent=Phyra50959;constitutive=1;rank=4 scaffold_57 ensembl protein_coding_gene 136288 139446 . - . ID=Phyra81187;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000039;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 136288 139446 . - . ID=Phyra81187;Parent=Phyra81187;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 136288 139446 . - 0 ID=Phyra81187;Parent=Phyra81187;rank=1 scaffold_57 . exon 136288 139446 . - . ID=Phyra81187.1;Parent=Phyra81187;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 145378 146604 . + . ID=Phyra50974;biotype=protein_coding;external_name=gwEuk.57.106.1;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 145378 146604 . + . ID=Phyra50974;Parent=Phyra50974;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 145378 146604 . + 0 ID=Phyra50974;Parent=Phyra50974;rank=1 scaffold_57 . exon 145378 146604 . + . ID=Phyra50974.1;Parent=Phyra50974;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 139552 141201 . + . ID=Phyra81188;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000040;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 139552 141201 . + . ID=Phyra81188;Parent=Phyra81188;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 139552 141201 . + 0 ID=Phyra81188;Parent=Phyra81188;rank=1 scaffold_57 . exon 139552 141201 . + . ID=Phyra81188.1;Parent=Phyra81188;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 141811 143508 . - . ID=Phyra81189;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000041;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 141811 143508 . - . ID=Phyra81189;Parent=Phyra81189;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 141811 143508 . - 0 ID=Phyra81189;Parent=Phyra81189;rank=1 scaffold_57 . exon 141811 143508 . - . ID=Phyra81189.1;Parent=Phyra81189;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 146909 147279 . + . ID=Phyra81191;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000043;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 146909 147279 . + . ID=Phyra81191;Parent=Phyra81191;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 146909 146952 . + 0 ID=Phyra81191;Parent=Phyra81191;rank=1 scaffold_57 . exon 146909 146952 . + . ID=Phyra81191.1;Parent=Phyra81191;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . CDS 147012 147279 . + 0 ID=Phyra81191;Parent=Phyra81191;rank=2 scaffold_57 . exon 147012 147279 . + . ID=Phyra81191.2;Parent=Phyra81191;constitutive=1;ensembl_phase=2;rank=2 scaffold_57 ensembl protein_coding_gene 148355 148972 . - . ID=Phyra81192;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000044;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 148355 148972 . - . ID=Phyra81192;Parent=Phyra81192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 148355 148972 . - 0 ID=Phyra81192;Parent=Phyra81192;rank=1 scaffold_57 . exon 148355 148972 . - . ID=Phyra81192.1;Parent=Phyra81192;constitutive=1;rank=1 scaffold_57 . biological_region 152424 152427 0.999 - . logic_name=eponine scaffold_57 . biological_region 152558 152562 0.999 - . logic_name=eponine scaffold_57 . biological_region 154111 154113 0.999 - . logic_name=eponine scaffold_57 . repeat_region 154211 154246 . ? . description=trf scaffold_57 . repeat_region 156059 156087 . ? . description=trf scaffold_57 . repeat_region 156063 156137 . ? . description=dust scaffold_57 ensembl protein_coding_gene 149831 152668 . - . ID=Phyra81193;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000045;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 149831 152668 . - . ID=Phyra81193;Parent=Phyra81193;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 149831 152668 . - 0 ID=Phyra81193;Parent=Phyra81193;rank=1 scaffold_57 . exon 149831 152668 . - . ID=Phyra81193.1;Parent=Phyra81193;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 153823 154392 . + . ID=Phyra81194;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000046;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 153823 154392 . + . ID=Phyra81194;Parent=Phyra81194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 153823 154392 . + 0 ID=Phyra81194;Parent=Phyra81194;rank=1 scaffold_57 . exon 153823 154392 . + . ID=Phyra81194.1;Parent=Phyra81194;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 159414 160235 . + . ID=Phyra81195;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000047;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 159414 160235 . + . ID=Phyra81195;Parent=Phyra81195;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 159414 160235 . + 0 ID=Phyra81195;Parent=Phyra81195;rank=1 scaffold_57 . exon 159414 160235 . + . ID=Phyra81195.1;Parent=Phyra81195;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 161825 163246 . - . ID=Phyra81196;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000048;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 161825 163246 . - . ID=Phyra81196;Parent=Phyra81196;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 161825 163246 . - 0 ID=Phyra81196;Parent=Phyra81196;rank=1 scaffold_57 . exon 161825 163246 . - . ID=Phyra81196.1;Parent=Phyra81196;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 163940 165313 . - . ID=Phyra81197;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000049;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 163940 165313 . - . ID=Phyra81197;Parent=Phyra81197;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 163940 165313 . - 0 ID=Phyra81197;Parent=Phyra81197;rank=1 scaffold_57 . exon 163940 165313 . - . ID=Phyra81197.1;Parent=Phyra81197;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 166750 169178 . - . ID=Phyra95920;biotype=protein_coding;external_name=C_scaffold_57000004;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 166750 169178 . - . ID=Phyra95920;Parent=Phyra95920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 166750 168551 . - 0 ID=Phyra95920;Parent=Phyra95920;rank=4 scaffold_57 . exon 166750 168551 . - . ID=Phyra95920.4;Parent=Phyra95920;constitutive=1;ensembl_phase=1;rank=4 scaffold_57 . CDS 168573 168746 . - 0 ID=Phyra95920;Parent=Phyra95920;rank=3 scaffold_57 . exon 168573 168746 . - . ID=Phyra95920.3;Parent=Phyra95920;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_57 . CDS 168833 168968 . - 0 ID=Phyra95920;Parent=Phyra95920;rank=2 scaffold_57 . exon 168833 168968 . - . ID=Phyra95920.2;Parent=Phyra95920;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_57 . CDS 168990 169178 . - 0 ID=Phyra95920;Parent=Phyra95920;rank=1 scaffold_57 . exon 168990 169178 . - . ID=Phyra95920.1;Parent=Phyra95920;constitutive=1;rank=1 scaffold_57 . repeat_region 169412 169482 . ? . description=trf scaffold_57 . repeat_region 170771 171065 . ? . description=dust scaffold_57 . biological_region 172459 172462 0.999 + . logic_name=eponine scaffold_57 . repeat_region 173706 173737 . ? . description=trf scaffold_57 . biological_region 177897 177903 0.999 + . logic_name=eponine scaffold_57 . biological_region 178027 178030 0.999 - . logic_name=eponine scaffold_57 . biological_region 178146 178151 0.999 - . logic_name=eponine scaffold_57 ensembl protein_coding_gene 171608 173073 . - . ID=Phyra81201;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000053;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 171608 173073 . - . ID=Phyra81201;Parent=Phyra81201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 171608 172909 . - 0 ID=Phyra81201;Parent=Phyra81201;rank=2 scaffold_57 . exon 171608 172909 . - . ID=Phyra81201.2;Parent=Phyra81201;constitutive=1;rank=2 scaffold_57 . CDS 173056 173073 . - 0 ID=Phyra81201;Parent=Phyra81201;rank=1 scaffold_57 . exon 173056 173073 . - . ID=Phyra81201.1;Parent=Phyra81201;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 173195 174724 . - . ID=Phyra81202;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000054;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 173195 174724 . - . ID=Phyra81202;Parent=Phyra81202;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 173195 174724 . - 0 ID=Phyra81202;Parent=Phyra81202;rank=1 scaffold_57 . exon 173195 174724 . - . ID=Phyra81202.1;Parent=Phyra81202;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 177897 179318 . + . ID=Phyra81203;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000055;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 177897 179318 . + . ID=Phyra81203;Parent=Phyra81203;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 177897 179318 . + 0 ID=Phyra81203;Parent=Phyra81203;rank=1 scaffold_57 . exon 177897 179318 . + . ID=Phyra81203.1;Parent=Phyra81203;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 169356 170651 . - . ID=Phyra95921;biotype=protein_coding;external_name=C_scaffold_57000005;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 169356 170651 . - . ID=Phyra95921;Parent=Phyra95921;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 169356 170651 . - 0 ID=Phyra95921;Parent=Phyra95921;rank=1 scaffold_57 . exon 169356 170651 . - . ID=Phyra95921.1;Parent=Phyra95921;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 179654 180441 . - . ID=Phyra71880;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_57000008;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 179654 180441 . - . ID=Phyra71880;Parent=Phyra71880;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 179654 179736 . - 0 ID=Phyra71880;Parent=Phyra71880;rank=4 scaffold_57 . exon 179654 179736 . - . ID=Phyra71880.4;Parent=Phyra71880;constitutive=1;ensembl_phase=1;rank=4 scaffold_57 . CDS 179801 180073 . - 0 ID=Phyra71880;Parent=Phyra71880;rank=3 scaffold_57 . exon 179801 180073 . - . ID=Phyra71880.3;Parent=Phyra71880;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_57 . CDS 180189 180279 . - 0 ID=Phyra71880;Parent=Phyra71880;rank=2 scaffold_57 . exon 180189 180279 . - . ID=Phyra71880.2;Parent=Phyra71880;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_57 . CDS 180364 180441 . - 0 ID=Phyra71880;Parent=Phyra71880;rank=1 scaffold_57 . exon 180364 180441 . - . ID=Phyra71880.1;Parent=Phyra71880;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 180578 181024 . + . ID=Phyra81205;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000057;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 180578 181024 . + . ID=Phyra81205;Parent=Phyra81205;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 180578 181024 . + 0 ID=Phyra81205;Parent=Phyra81205;rank=1 scaffold_57 . exon 180578 181024 . + . ID=Phyra81205.1;Parent=Phyra81205;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 181114 181727 . - . ID=Phyra81206;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000058;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 181114 181727 . - . ID=Phyra81206;Parent=Phyra81206;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 181114 181242 . - 0 ID=Phyra81206;Parent=Phyra81206;rank=4 scaffold_57 . exon 181114 181242 . - . ID=Phyra81206.4;Parent=Phyra81206;constitutive=1;rank=4 scaffold_57 . CDS 181313 181456 . - 0 ID=Phyra81206;Parent=Phyra81206;rank=3 scaffold_57 . exon 181313 181456 . - . ID=Phyra81206.3;Parent=Phyra81206;constitutive=1;rank=3 scaffold_57 . CDS 181517 181594 . - 0 ID=Phyra81206;Parent=Phyra81206;rank=2 scaffold_57 . exon 181517 181594 . - . ID=Phyra81206.2;Parent=Phyra81206;constitutive=1;rank=2 scaffold_57 . CDS 181680 181727 . - 0 ID=Phyra81206;Parent=Phyra81206;rank=1 scaffold_57 . exon 181680 181727 . - . ID=Phyra81206.1;Parent=Phyra81206;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 181999 184689 . - . ID=Phyra81207;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000059;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 181999 184689 . - . ID=Phyra81207;Parent=Phyra81207;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 181999 182527 . - 0 ID=Phyra81207;Parent=Phyra81207;rank=3 scaffold_57 . exon 181999 182527 . - . ID=Phyra81207.3;Parent=Phyra81207;constitutive=1;ensembl_phase=2;rank=3 scaffold_57 . CDS 182596 182601 . - 0 ID=Phyra81207;Parent=Phyra81207;rank=2 scaffold_57 . exon 182596 182601 . - . ID=Phyra81207.2;Parent=Phyra81207;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_57 . CDS 182693 184689 . - 0 ID=Phyra81207;Parent=Phyra81207;rank=1 scaffold_57 . exon 182693 184689 . - . ID=Phyra81207.1;Parent=Phyra81207;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 ensembl protein_coding_gene 186094 188184 . + . ID=Phyra81208;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000060;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 186094 188184 . + . ID=Phyra81208;Parent=Phyra81208;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 186094 188184 . + 0 ID=Phyra81208;Parent=Phyra81208;rank=1 scaffold_57 . exon 186094 188184 . + . ID=Phyra81208.1;Parent=Phyra81208;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 188572 190650 . + . ID=Phyra81209;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000061;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 188572 190650 . + . ID=Phyra81209;Parent=Phyra81209;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 188572 190650 . + 0 ID=Phyra81209;Parent=Phyra81209;rank=1 scaffold_57 . exon 188572 190650 . + . ID=Phyra81209.1;Parent=Phyra81209;constitutive=1;rank=1 scaffold_57 . biological_region 193164 193164 0.999 - . logic_name=eponine scaffold_57 . repeat_region 197466 197491 . ? . description=trf scaffold_57 . repeat_region 198601 198608 . ? . description=dust scaffold_57 ensembl protein_coding_gene 195254 196508 . + . ID=Phyra81211;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000063;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 195254 196508 . + . ID=Phyra81211;Parent=Phyra81211;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 195254 195935 . + 0 ID=Phyra81211;Parent=Phyra81211;rank=1 scaffold_57 . exon 195254 195935 . + . ID=Phyra81211.1;Parent=Phyra81211;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . CDS 196021 196508 . + 0 ID=Phyra81211;Parent=Phyra81211;rank=2 scaffold_57 . exon 196021 196508 . + . ID=Phyra81211.2;Parent=Phyra81211;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 ensembl protein_coding_gene 198420 200027 . - . ID=Phyra81212;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000064;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 198420 200027 . - . ID=Phyra81212;Parent=Phyra81212;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 198420 200027 . - 0 ID=Phyra81212;Parent=Phyra81212;rank=1 scaffold_57 . exon 198420 200027 . - . ID=Phyra81212.1;Parent=Phyra81212;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 191160 194909 . + . ID=Phyra95926;biotype=protein_coding;external_name=C_scaffold_57000010;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 191160 194909 . + . ID=Phyra95926;Parent=Phyra95926;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 191160 193223 . + 0 ID=Phyra95926;Parent=Phyra95926;rank=1 scaffold_57 . exon 191160 193223 . + . ID=Phyra95926.1;Parent=Phyra95926;constitutive=1;rank=1 scaffold_57 . CDS 193519 193990 . + 0 ID=Phyra95926;Parent=Phyra95926;rank=2 scaffold_57 . exon 193519 193990 . + . ID=Phyra95926.2;Parent=Phyra95926;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_57 . CDS 194060 194346 . + 0 ID=Phyra95926;Parent=Phyra95926;rank=3 scaffold_57 . exon 194060 194346 . + . ID=Phyra95926.3;Parent=Phyra95926;constitutive=1;ensembl_phase=1;rank=3 scaffold_57 . CDS 194415 194909 . + 0 ID=Phyra95926;Parent=Phyra95926;rank=4 scaffold_57 . exon 194415 194909 . + . ID=Phyra95926.4;Parent=Phyra95926;constitutive=1;rank=4 scaffold_57 ensembl protein_coding_gene 201936 203558 . - . ID=Phyra81213;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000065;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 201936 203558 . - . ID=Phyra81213;Parent=Phyra81213;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 201936 203558 . - 0 ID=Phyra81213;Parent=Phyra81213;rank=1 scaffold_57 . exon 201936 203558 . - . ID=Phyra81213.1;Parent=Phyra81213;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 203932 205920 . - . ID=Phyra81214;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000066;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 203932 205920 . - . ID=Phyra81214;Parent=Phyra81214;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 203932 205920 . - 0 ID=Phyra81214;Parent=Phyra81214;rank=1 scaffold_57 . exon 203932 205920 . - . ID=Phyra81214.1;Parent=Phyra81214;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 206271 207799 . - . ID=Phyra81215;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000067;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 206271 207799 . - . ID=Phyra81215;Parent=Phyra81215;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 206271 206492 . - 0 ID=Phyra81215;Parent=Phyra81215;rank=2 scaffold_57 . exon 206271 206492 . - . ID=Phyra81215.2;Parent=Phyra81215;constitutive=1;rank=2 scaffold_57 . CDS 206561 207799 . - 0 ID=Phyra81215;Parent=Phyra81215;rank=1 scaffold_57 . exon 206561 207799 . - . ID=Phyra81215.1;Parent=Phyra81215;constitutive=1;rank=1 scaffold_57 . repeat_region 210770 210852 . ? . description=trf scaffold_57 . repeat_region 210782 210844 . ? . description=dust scaffold_57 . repeat_region 211251 211293 . ? . description=trf scaffold_57 . repeat_region 211414 211744 . ? . description=dust scaffold_57 . repeat_region 213224 213234 . ? . description=dust scaffold_57 . repeat_region 214113 214369 . ? . description=dust scaffold_57 . repeat_region 214724 214789 . ? . description=trf scaffold_57 ensembl tRNA_gene 214429 214509 . + . ID=EPrPRAG00000000056;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_57 ensembl transcript 214429 214509 . + . ID=EPrPRAT00000000056;Parent=EPrPRAG00000000056;biotype=tRNA;logic_name=ncrna_eg scaffold_57 ensembl tRNA_gene 213906 213978 . + . ID=EPrPRAG00000000161;biotype=tRNA;description=tRNA-Val for anticodon UAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_57 ensembl transcript 213906 213978 . + . ID=EPrPRAT00000000161;Parent=EPrPRAG00000000161;biotype=tRNA;logic_name=ncrna_eg scaffold_57 ensembl tRNA_gene 211067 211147 . - . ID=EPrPRAG00000000200;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_57 ensembl transcript 211067 211147 . - . ID=EPrPRAT00000000200;Parent=EPrPRAG00000000200;biotype=tRNA;logic_name=ncrna_eg scaffold_57 . exon 214429 214509 . + . ID=EPrPRAE00000000056;Parent=EPrPRAT00000000056;constitutive=1;rank=1 scaffold_57 . exon 213906 213978 . + . ID=EPrPRAE00000000161;Parent=EPrPRAT00000000161;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . exon 211067 211147 . - . ID=EPrPRAE00000000200;Parent=EPrPRAT00000000200;constitutive=1;rank=1 scaffold_57 ensembl tRNA_gene 227161 227227 . - . ID=EPrPRAG00000000169;biotype=tRNA;description=tRNA-Phe for anticodon AAA [Source:TRNASCAN_SE%3BAcc:tRNA-Phe];external_name=tRNA-Phe;logic_name=ncrna_eg scaffold_57 ensembl transcript 227161 227227 . - . ID=EPrPRAT00000000169;Parent=EPrPRAG00000000169;biotype=tRNA;logic_name=ncrna_eg scaffold_57 . exon 227161 227227 . - . ID=EPrPRAE00000000169;Parent=EPrPRAT00000000169;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 ensembl protein_coding_gene 227947 229594 . + . ID=Phyra71881;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_57000009;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 227947 229594 . + . ID=Phyra71881;Parent=Phyra71881;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 227947 227995 . + 0 ID=Phyra71881;Parent=Phyra71881;rank=1 scaffold_57 . exon 227947 227995 . + . ID=Phyra71881.1;Parent=Phyra71881;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . CDS 228261 228919 . + 0 ID=Phyra71881;Parent=Phyra71881;rank=2 scaffold_57 . exon 228261 228919 . + . ID=Phyra71881.2;Parent=Phyra71881;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 . CDS 229009 229103 . + 0 ID=Phyra71881;Parent=Phyra71881;rank=3 scaffold_57 . exon 229009 229103 . + . ID=Phyra71881.3;Parent=Phyra71881;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_57 . CDS 229183 229594 . + 0 ID=Phyra71881;Parent=Phyra71881;rank=4 scaffold_57 ensembl protein_coding_gene 221271 223774 . + . ID=Phyra81216;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000068;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 221271 223774 . + . ID=Phyra81216;Parent=Phyra81216;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 221271 221735 . + 0 ID=Phyra81216;Parent=Phyra81216;rank=1 scaffold_57 . exon 221271 221735 . + . ID=Phyra81216.1;Parent=Phyra81216;constitutive=1;rank=1 scaffold_57 . CDS 221782 221854 . + 0 ID=Phyra81216;Parent=Phyra81216;rank=2 scaffold_57 . exon 221782 221854 . + . ID=Phyra81216.2;Parent=Phyra81216;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_57 . CDS 222097 222153 . + 0 ID=Phyra81216;Parent=Phyra81216;rank=3 scaffold_57 . exon 222097 222153 . + . ID=Phyra81216.3;Parent=Phyra81216;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_57 . CDS 222186 222566 . + 0 ID=Phyra81216;Parent=Phyra81216;rank=4 scaffold_57 . exon 222186 222566 . + . ID=Phyra81216.4;Parent=Phyra81216;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_57 . CDS 222808 223269 . + 0 ID=Phyra81216;Parent=Phyra81216;rank=5 scaffold_57 . exon 222808 223269 . + . ID=Phyra81216.5;Parent=Phyra81216;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_57 . CDS 223617 223774 . + 0 ID=Phyra81216;Parent=Phyra81216;rank=6 scaffold_57 . exon 223617 223774 . + . ID=Phyra81216.6;Parent=Phyra81216;constitutive=1;ensembl_phase=1;rank=6 scaffold_57 ensembl protein_coding_gene 225344 226336 . + . ID=Phyra81217;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000069;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 225344 226336 . + . ID=Phyra81217;Parent=Phyra81217;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 225344 226336 . + 0 ID=Phyra81217;Parent=Phyra81217;rank=1 scaffold_57 . exon 225344 226336 . + . ID=Phyra81217.1;Parent=Phyra81217;constitutive=1;rank=1 scaffold_57 . biological_region 231266 231266 0.999 + . logic_name=eponine scaffold_57 . biological_region 231270 231274 0.999 - . logic_name=eponine scaffold_57 . biological_region 231282 231284 0.999 + . logic_name=eponine scaffold_57 . biological_region 231925 231927 0.999 - . logic_name=eponine scaffold_57 . repeat_region 232449 232457 . ? . description=dust scaffold_57 . biological_region 235278 235279 0.999 - . logic_name=eponine scaffold_57 . biological_region 235450 235453 0.999 - . logic_name=eponine scaffold_57 . biological_region 235514 235519 0.999 - . logic_name=eponine scaffold_57 ensembl protein_coding_gene 237670 237987 . + . ID=Phyra50887;biotype=protein_coding;external_name=gwEuk.57.19.1;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 237670 237987 . + . ID=Phyra50887;Parent=Phyra50887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 237670 237987 . + 0 ID=Phyra50887;Parent=Phyra50887;rank=1 scaffold_57 . exon 237670 237987 . + . ID=Phyra50887.1;Parent=Phyra50887;constitutive=1;rank=1 scaffold_57 . exon 229183 229594 . + . ID=Phyra71881.4;Parent=Phyra71881;constitutive=1;ensembl_phase=2;rank=4 scaffold_57 ensembl protein_coding_gene 229907 230296 . - . ID=Phyra81219;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000071;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 229907 230296 . - . ID=Phyra81219;Parent=Phyra81219;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 229907 230296 . - 0 ID=Phyra81219;Parent=Phyra81219;rank=1 scaffold_57 . exon 229907 230296 . - . ID=Phyra81219.1;Parent=Phyra81219;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 230601 232640 . + . ID=Phyra81220;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000072;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 230601 232640 . + . ID=Phyra81220;Parent=Phyra81220;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 230601 232415 . + 0 ID=Phyra81220;Parent=Phyra81220;rank=1 scaffold_57 . exon 230601 232415 . + . ID=Phyra81220.1;Parent=Phyra81220;constitutive=1;rank=1 scaffold_57 . CDS 232497 232640 . + 0 ID=Phyra81220;Parent=Phyra81220;rank=2 scaffold_57 . exon 232497 232640 . + . ID=Phyra81220.2;Parent=Phyra81220;constitutive=1;rank=2 scaffold_57 ensembl protein_coding_gene 233121 235457 . - . ID=Phyra81221;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000073;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 233121 235457 . - . ID=Phyra81221;Parent=Phyra81221;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 233121 235457 . - 0 ID=Phyra81221;Parent=Phyra81221;rank=1 scaffold_57 . exon 233121 235457 . - . ID=Phyra81221.1;Parent=Phyra81221;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 238386 239384 . + . ID=Phyra81223;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000075;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 238386 239384 . + . ID=Phyra81223;Parent=Phyra81223;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 238386 238590 . + 0 ID=Phyra81223;Parent=Phyra81223;rank=1 scaffold_57 . exon 238386 238590 . + . ID=Phyra81223.1;Parent=Phyra81223;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . CDS 238673 238805 . + 0 ID=Phyra81223;Parent=Phyra81223;rank=2 scaffold_57 . exon 238673 238805 . + . ID=Phyra81223.2;Parent=Phyra81223;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_57 . CDS 238899 239070 . + 0 ID=Phyra81223;Parent=Phyra81223;rank=3 scaffold_57 . exon 238899 239070 . + . ID=Phyra81223.3;Parent=Phyra81223;constitutive=1;ensembl_phase=2;rank=3 scaffold_57 . CDS 239112 239384 . + 0 ID=Phyra81223;Parent=Phyra81223;rank=4 scaffold_57 . repeat_region 247551 247582 . ? . description=trf scaffold_57 . repeat_region 247554 247582 . ? . description=trf scaffold_57 ensembl protein_coding_gene 244198 244425 . - . ID=Phyra50907;biotype=protein_coding;external_name=gwEuk.57.39.1;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 244198 244425 . - . ID=Phyra50907;Parent=Phyra50907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 244198 244425 . - 0 ID=Phyra50907;Parent=Phyra50907;rank=1 scaffold_57 . exon 244198 244425 . - . ID=Phyra50907.1;Parent=Phyra50907;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 245183 245866 . + . ID=Phyra50913;biotype=protein_coding;external_name=gwEuk.57.45.1;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 245183 245866 . + . ID=Phyra50913;Parent=Phyra50913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 245183 245866 . + 0 ID=Phyra50913;Parent=Phyra50913;rank=1 scaffold_57 . exon 245183 245866 . + . ID=Phyra50913.1;Parent=Phyra50913;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 242668 243705 . + . ID=Phyra71882;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_57000010;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 242668 243705 . + . ID=Phyra71882;Parent=Phyra71882;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 242668 242748 . + 0 ID=Phyra71882;Parent=Phyra71882;rank=1 scaffold_57 . exon 242668 242748 . + . ID=Phyra71882.1;Parent=Phyra71882;constitutive=1;rank=1 scaffold_57 . CDS 242773 243705 . + 0 ID=Phyra71882;Parent=Phyra71882;rank=2 scaffold_57 . exon 242773 243705 . + . ID=Phyra71882.2;Parent=Phyra71882;constitutive=1;rank=2 scaffold_57 . exon 239112 239384 . + . ID=Phyra81223.4;Parent=Phyra81223;constitutive=1;rank=4 scaffold_57 ensembl protein_coding_gene 239544 240370 . - . ID=Phyra81224;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000076;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 239544 240370 . - . ID=Phyra81224;Parent=Phyra81224;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 239544 240103 . - 0 ID=Phyra81224;Parent=Phyra81224;rank=2 scaffold_57 . exon 239544 240103 . - . ID=Phyra81224.2;Parent=Phyra81224;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 . CDS 240193 240370 . - 0 ID=Phyra81224;Parent=Phyra81224;rank=1 scaffold_57 . exon 240193 240370 . - . ID=Phyra81224.1;Parent=Phyra81224;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 ensembl protein_coding_gene 241269 242441 . + . ID=Phyra81225;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000077;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 241269 242441 . + . ID=Phyra81225;Parent=Phyra81225;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 241269 242441 . + 0 ID=Phyra81225;Parent=Phyra81225;rank=1 scaffold_57 . exon 241269 242441 . + . ID=Phyra81225.1;Parent=Phyra81225;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 246290 247586 . + . ID=Phyra81228;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000080;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 246290 247586 . + . ID=Phyra81228;Parent=Phyra81228;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 246290 246439 . + 0 ID=Phyra81228;Parent=Phyra81228;rank=1 scaffold_57 . exon 246290 246439 . + . ID=Phyra81228.1;Parent=Phyra81228;constitutive=1;rank=1 scaffold_57 . CDS 246507 246909 . + 0 ID=Phyra81228;Parent=Phyra81228;rank=2 scaffold_57 . exon 246507 246909 . + . ID=Phyra81228.2;Parent=Phyra81228;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_57 . CDS 247009 247586 . + 0 ID=Phyra81228;Parent=Phyra81228;rank=3 scaffold_57 . exon 247009 247586 . + . ID=Phyra81228.3;Parent=Phyra81228;constitutive=1;ensembl_phase=1;rank=3 scaffold_57 . biological_region 250333 250334 0.999 - . logic_name=eponine scaffold_57 . biological_region 251072 251075 0.999 - . logic_name=eponine scaffold_57 . repeat_region 251684 251694 . ? . description=dust scaffold_57 . repeat_region 254890 254898 . ? . description=dust scaffold_57 . repeat_region 255170 255189 . ? . description=dust scaffold_57 . repeat_region 256495 257692 . ? . description=dust scaffold_57 . biological_region 257749 257750 0.999 + . logic_name=eponine scaffold_57 . biological_region 257789 257792 0.999 + . logic_name=eponine scaffold_57 . repeat_region 257865 258061 . - . description=GypsyPi-1c_I-int scaffold_57 . repeat_region 259005 259241 . ? . description=dust scaffold_57 ensembl protein_coding_gene 250757 253247 . + . ID=Phyra81229;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000081;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 250757 253247 . + . ID=Phyra81229;Parent=Phyra81229;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 250757 251199 . + 0 ID=Phyra81229;Parent=Phyra81229;rank=1 scaffold_57 . exon 250757 251199 . + . ID=Phyra81229.1;Parent=Phyra81229;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . CDS 251275 251377 . + 0 ID=Phyra81229;Parent=Phyra81229;rank=2 scaffold_57 . exon 251275 251377 . + . ID=Phyra81229.2;Parent=Phyra81229;constitutive=1;ensembl_phase=2;rank=2 scaffold_57 . CDS 251411 251523 . + 0 ID=Phyra81229;Parent=Phyra81229;rank=3 scaffold_57 . exon 251411 251523 . + . ID=Phyra81229.3;Parent=Phyra81229;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_57 . CDS 251748 251807 . + 0 ID=Phyra81229;Parent=Phyra81229;rank=4 scaffold_57 . exon 251748 251807 . + . ID=Phyra81229.4;Parent=Phyra81229;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_57 . CDS 251903 253247 . + 0 ID=Phyra81229;Parent=Phyra81229;rank=5 scaffold_57 . exon 251903 253247 . + . ID=Phyra81229.5;Parent=Phyra81229;constitutive=1;ensembl_phase=2;rank=5 scaffold_57 ensembl protein_coding_gene 253817 255897 . + . ID=Phyra81230;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000082;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 253817 255897 . + . ID=Phyra81230;Parent=Phyra81230;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 253817 254490 . + 0 ID=Phyra81230;Parent=Phyra81230;rank=1 scaffold_57 . exon 253817 254490 . + . ID=Phyra81230.1;Parent=Phyra81230;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . CDS 254580 254666 . + 0 ID=Phyra81230;Parent=Phyra81230;rank=2 scaffold_57 . exon 254580 254666 . + . ID=Phyra81230.2;Parent=Phyra81230;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_57 . CDS 254749 254877 . + 0 ID=Phyra81230;Parent=Phyra81230;rank=3 scaffold_57 . exon 254749 254877 . + . ID=Phyra81230.3;Parent=Phyra81230;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_57 . CDS 254965 255428 . + 0 ID=Phyra81230;Parent=Phyra81230;rank=4 scaffold_57 . exon 254965 255428 . + . ID=Phyra81230.4;Parent=Phyra81230;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_57 . CDS 255502 255802 . + 0 ID=Phyra81230;Parent=Phyra81230;rank=5 scaffold_57 . exon 255502 255802 . + . ID=Phyra81230.5;Parent=Phyra81230;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_57 . CDS 255885 255897 . + 0 ID=Phyra81230;Parent=Phyra81230;rank=6 scaffold_57 . exon 255885 255897 . + . ID=Phyra81230.6;Parent=Phyra81230;constitutive=1;ensembl_phase=2;rank=6 scaffold_57 ensembl protein_coding_gene 258418 260347 . + . ID=Phyra81231;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000083;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 258418 260347 . + . ID=Phyra81231;Parent=Phyra81231;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 258418 258951 . + 0 ID=Phyra81231;Parent=Phyra81231;rank=1 scaffold_57 . exon 258418 258951 . + . ID=Phyra81231.1;Parent=Phyra81231;constitutive=1;rank=1 scaffold_57 . CDS 259348 260031 . + 0 ID=Phyra81231;Parent=Phyra81231;rank=2 scaffold_57 . CDS 260052 260095 . + 0 ID=Phyra81231;Parent=Phyra81231;rank=3 scaffold_57 . CDS 260302 260347 . + 0 ID=Phyra81231;Parent=Phyra81231;rank=4 scaffold_57 . repeat_region 265772 265801 . ? . description=trf scaffold_57 . exon 259348 260031 . + . ID=Phyra81231.2;Parent=Phyra81231;constitutive=1;rank=2 scaffold_57 . exon 260052 260095 . + . ID=Phyra81231.3;Parent=Phyra81231;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_57 . exon 260302 260347 . + . ID=Phyra81231.4;Parent=Phyra81231;constitutive=1;ensembl_phase=2;rank=4 scaffold_57 . repeat_region 269973 269980 . ? . description=dust scaffold_57 . repeat_region 272075 272082 . ? . description=dust scaffold_57 . repeat_region 272319 272331 . ? . description=dust scaffold_57 . repeat_region 274088 274096 . ? . description=dust scaffold_57 . repeat_region 275883 275890 . ? . description=dust scaffold_57 . repeat_region 276392 276408 . ? . description=dust scaffold_57 . repeat_region 277564 277571 . ? . description=dust scaffold_57 . repeat_region 278349 278398 . ? . description=dust scaffold_57 ensembl protein_coding_gene 269583 271534 . + . ID=Phyra81232;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000084;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 269583 271534 . + . ID=Phyra81232;Parent=Phyra81232;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 269583 269636 . + 0 ID=Phyra81232;Parent=Phyra81232;rank=1 scaffold_57 . exon 269583 269636 . + . ID=Phyra81232.1;Parent=Phyra81232;constitutive=1;rank=1 scaffold_57 . CDS 269720 269940 . + 0 ID=Phyra81232;Parent=Phyra81232;rank=2 scaffold_57 . exon 269720 269940 . + . ID=Phyra81232.2;Parent=Phyra81232;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_57 . CDS 270092 270516 . + 0 ID=Phyra81232;Parent=Phyra81232;rank=3 scaffold_57 . exon 270092 270516 . + . ID=Phyra81232.3;Parent=Phyra81232;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_57 . CDS 270635 270906 . + 0 ID=Phyra81232;Parent=Phyra81232;rank=4 scaffold_57 . exon 270635 270906 . + . ID=Phyra81232.4;Parent=Phyra81232;constitutive=1;ensembl_phase=1;rank=4 scaffold_57 . CDS 270969 271054 . + 0 ID=Phyra81232;Parent=Phyra81232;rank=5 scaffold_57 . exon 270969 271054 . + . ID=Phyra81232.5;Parent=Phyra81232;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_57 . CDS 271166 271180 . + 0 ID=Phyra81232;Parent=Phyra81232;rank=6 scaffold_57 . exon 271166 271180 . + . ID=Phyra81232.6;Parent=Phyra81232;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_57 . CDS 271243 271261 . + 0 ID=Phyra81232;Parent=Phyra81232;rank=7 scaffold_57 . exon 271243 271261 . + . ID=Phyra81232.7;Parent=Phyra81232;constitutive=1;ensembl_phase=2;rank=7 scaffold_57 . CDS 271322 271534 . + 0 ID=Phyra81232;Parent=Phyra81232;rank=8 scaffold_57 . exon 271322 271534 . + . ID=Phyra81232.8;Parent=Phyra81232;constitutive=1;rank=8 scaffold_57 ensembl protein_coding_gene 272218 275312 . + . ID=Phyra81233;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000085;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 272218 275312 . + . ID=Phyra81233;Parent=Phyra81233;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 272218 272286 . + 0 ID=Phyra81233;Parent=Phyra81233;rank=1 scaffold_57 . exon 272218 272286 . + . ID=Phyra81233.1;Parent=Phyra81233;constitutive=1;rank=1 scaffold_57 . CDS 272445 272874 . + 0 ID=Phyra81233;Parent=Phyra81233;rank=2 scaffold_57 . exon 272445 272874 . + . ID=Phyra81233.2;Parent=Phyra81233;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_57 . CDS 272984 273295 . + 0 ID=Phyra81233;Parent=Phyra81233;rank=3 scaffold_57 . exon 272984 273295 . + . ID=Phyra81233.3;Parent=Phyra81233;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_57 . CDS 273330 274082 . + 0 ID=Phyra81233;Parent=Phyra81233;rank=4 scaffold_57 . exon 273330 274082 . + . ID=Phyra81233.4;Parent=Phyra81233;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_57 . CDS 274284 275245 . + 0 ID=Phyra81233;Parent=Phyra81233;rank=5 scaffold_57 . exon 274284 275245 . + . ID=Phyra81233.5;Parent=Phyra81233;constitutive=1;ensembl_phase=1;rank=5 scaffold_57 . CDS 275292 275312 . + 0 ID=Phyra81233;Parent=Phyra81233;rank=6 scaffold_57 . exon 275292 275312 . + . ID=Phyra81233.6;Parent=Phyra81233;constitutive=1;rank=6 scaffold_57 . biological_region 279279 279283 0.999 + . logic_name=eponine scaffold_57 . biological_region 279330 279335 0.999 + . logic_name=eponine scaffold_57 . biological_region 279359 279360 0.999 - . logic_name=eponine scaffold_57 . biological_region 279396 279397 0.999 - . logic_name=eponine scaffold_57 . biological_region 279433 279437 0.999 + . logic_name=eponine scaffold_57 . repeat_region 279961 282198 . + . description=GypsyPi-1c_I-int scaffold_57 . repeat_region 282679 284209 . + . description=GypsyPi-1c_I-int scaffold_57 . repeat_region 284527 284805 . + . description=GypsyPi-1c_I-int scaffold_57 . biological_region 284879 284882 0.999 - . logic_name=eponine scaffold_57 . biological_region 284921 284923 0.999 - . logic_name=eponine scaffold_57 . biological_region 285762 285765 0.999 + . logic_name=eponine scaffold_57 . biological_region 285947 285948 0.999 + . logic_name=eponine scaffold_57 . biological_region 286063 286065 0.999 - . logic_name=eponine scaffold_57 . repeat_region 287938 287959 . ? . description=trf scaffold_57 . repeat_region 288817 288883 . ? . description=trf scaffold_57 . repeat_region 288817 288883 . ? . description=trf scaffold_57 ensembl protein_coding_gene 278988 280660 . + . ID=Phyra81234;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000086;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 278988 280660 . + . ID=Phyra81234;Parent=Phyra81234;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 278988 279184 . + 0 ID=Phyra81234;Parent=Phyra81234;rank=1 scaffold_57 . exon 278988 279184 . + . ID=Phyra81234.1;Parent=Phyra81234;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . CDS 279241 280660 . + 0 ID=Phyra81234;Parent=Phyra81234;rank=2 scaffold_57 . exon 279241 280660 . + . ID=Phyra81234.2;Parent=Phyra81234;constitutive=1;ensembl_phase=2;rank=2 scaffold_57 ensembl protein_coding_gene 284822 286424 . - . ID=Phyra81235;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000087;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 284822 286424 . - . ID=Phyra81235;Parent=Phyra81235;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 284822 285019 . - 0 ID=Phyra81235;Parent=Phyra81235;rank=2 scaffold_57 . exon 284822 285019 . - . ID=Phyra81235.2;Parent=Phyra81235;constitutive=1;rank=2 scaffold_57 . CDS 285087 286424 . - 0 ID=Phyra81235;Parent=Phyra81235;rank=1 scaffold_57 . exon 285087 286424 . - . ID=Phyra81235.1;Parent=Phyra81235;constitutive=1;rank=1 scaffold_57 . repeat_region 297729 297778 . ? . description=dust scaffold_57 ensembl protein_coding_gene 292265 294139 . - . ID=Phyra81236;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000088;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 292265 294139 . - . ID=Phyra81236;Parent=Phyra81236;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 292265 292284 . - 0 ID=Phyra81236;Parent=Phyra81236;rank=6 scaffold_57 . exon 292265 292284 . - . ID=Phyra81236.6;Parent=Phyra81236;constitutive=1;ensembl_phase=1;rank=6 scaffold_57 . CDS 292367 292477 . - 0 ID=Phyra81236;Parent=Phyra81236;rank=5 scaffold_57 . exon 292367 292477 . - . ID=Phyra81236.5;Parent=Phyra81236;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_57 . CDS 292674 292813 . - 0 ID=Phyra81236;Parent=Phyra81236;rank=4 scaffold_57 . exon 292674 292813 . - . ID=Phyra81236.4;Parent=Phyra81236;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_57 . CDS 292873 293512 . - 0 ID=Phyra81236;Parent=Phyra81236;rank=3 scaffold_57 . exon 292873 293512 . - . ID=Phyra81236.3;Parent=Phyra81236;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_57 . CDS 293574 293716 . - 0 ID=Phyra81236;Parent=Phyra81236;rank=2 scaffold_57 . exon 293574 293716 . - . ID=Phyra81236.2;Parent=Phyra81236;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_57 . CDS 293988 294139 . - 0 ID=Phyra81236;Parent=Phyra81236;rank=1 scaffold_57 . exon 293988 294139 . - . ID=Phyra81236.1;Parent=Phyra81236;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 ensembl protein_coding_gene 294860 298831 . + . ID=Phyra81237;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_57000089;logic_name=jgi_phyra1 scaffold_57 ensembl transcript 294860 298831 . + . ID=Phyra81237;Parent=Phyra81237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_57 . CDS 294860 295741 . + 0 ID=Phyra81237;Parent=Phyra81237;rank=1 scaffold_57 . exon 294860 295741 . + . ID=Phyra81237.1;Parent=Phyra81237;constitutive=1;rank=1 scaffold_57 . CDS 295864 296007 . + 0 ID=Phyra81237;Parent=Phyra81237;rank=2 scaffold_57 . exon 295864 296007 . + . ID=Phyra81237.2;Parent=Phyra81237;constitutive=1;rank=2 scaffold_57 . CDS 296209 297711 . + 0 ID=Phyra81237;Parent=Phyra81237;rank=3 scaffold_57 . exon 296209 297711 . + . ID=Phyra81237.3;Parent=Phyra81237;constitutive=1;rank=3 scaffold_57 . CDS 297976 298374 . + 0 ID=Phyra81237;Parent=Phyra81237;rank=4 scaffold_57 . exon 297976 298374 . + . ID=Phyra81237.4;Parent=Phyra81237;constitutive=1;rank=4 scaffold_57 . CDS 298701 298831 . + 0 ID=Phyra81237;Parent=Phyra81237;rank=5 scaffold_57 . exon 298701 298831 . + . ID=Phyra81237.5;Parent=Phyra81237;constitutive=1;ensembl_end_phase=2;rank=5 ##gff-version 3 ##sequence-region scaffold_66 1 301783 scaffold_66 . biological_region 638 642 0.999 + . logic_name=eponine scaffold_66 . biological_region 2145 2149 0.999 + . logic_name=eponine scaffold_66 . biological_region 2196 2201 0.999 + . logic_name=eponine scaffold_66 . biological_region 2225 2225 0.999 - . logic_name=eponine scaffold_66 . biological_region 2262 2263 0.999 - . logic_name=eponine scaffold_66 . biological_region 2299 2303 0.999 + . logic_name=eponine scaffold_66 . repeat_region 2728 6737 . ? . description=dust scaffold_66 . biological_region 6888 6895 0.999 + . logic_name=eponine scaffold_66 ensembl protein_coding_gene 487 1335 . + . ID=Phyra81924;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000001;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 487 1335 . + . ID=Phyra81924;Parent=Phyra81924;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 487 1335 . + 0 ID=Phyra81924;Parent=Phyra81924;rank=1 scaffold_66 . exon 487 1335 . + . ID=Phyra81924.1;Parent=Phyra81924;constitutive=1;rank=1 scaffold_66 . repeat_region 10912 10972 . ? . description=trf scaffold_66 . repeat_region 10912 10978 . + . description=(TGAG)n scaffold_66 . repeat_region 17160 17198 . ? . description=trf scaffold_66 ensembl protein_coding_gene 12038 13369 . - . ID=Phyra81925;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000002;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 12038 13369 . - . ID=Phyra81925;Parent=Phyra81925;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 12038 13369 . - 0 ID=Phyra81925;Parent=Phyra81925;rank=1 scaffold_66 . exon 12038 13369 . - . ID=Phyra81925.1;Parent=Phyra81925;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 14143 15243 . + . ID=Phyra81926;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000003;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 14143 15243 . + . ID=Phyra81926;Parent=Phyra81926;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 14143 14660 . + 0 ID=Phyra81926;Parent=Phyra81926;rank=1 scaffold_66 . exon 14143 14660 . + . ID=Phyra81926.1;Parent=Phyra81926;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . CDS 14682 15243 . + 0 ID=Phyra81926;Parent=Phyra81926;rank=2 scaffold_66 . exon 14682 15243 . + . ID=Phyra81926.2;Parent=Phyra81926;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 ensembl protein_coding_gene 15644 17220 . - . ID=Phyra81927;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000004;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 15644 17220 . - . ID=Phyra81927;Parent=Phyra81927;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 15644 15977 . - 0 ID=Phyra81927;Parent=Phyra81927;rank=2 scaffold_66 . exon 15644 15977 . - . ID=Phyra81927.2;Parent=Phyra81927;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 16070 17220 . - 0 ID=Phyra81927;Parent=Phyra81927;rank=1 scaffold_66 . exon 16070 17220 . - . ID=Phyra81927.1;Parent=Phyra81927;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 17594 18942 . - . ID=Phyra81928;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000005;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 17594 18942 . - . ID=Phyra81928;Parent=Phyra81928;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 17594 18863 . - 0 ID=Phyra81928;Parent=Phyra81928;rank=2 scaffold_66 . exon 17594 18863 . - . ID=Phyra81928.2;Parent=Phyra81928;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 18932 18942 . - 0 ID=Phyra81928;Parent=Phyra81928;rank=1 scaffold_66 . exon 18932 18942 . - . ID=Phyra81928.1;Parent=Phyra81928;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . biological_region 20583 20587 0.999 + . logic_name=eponine scaffold_66 . biological_region 20666 20670 0.999 + . logic_name=eponine scaffold_66 . biological_region 20744 20751 0.999 - . logic_name=eponine scaffold_66 . biological_region 20779 20780 0.999 - . logic_name=eponine scaffold_66 . biological_region 21175 21181 0.999 + . logic_name=eponine scaffold_66 . repeat_region 22110 22117 . ? . description=dust scaffold_66 . repeat_region 22449 22458 . ? . description=dust scaffold_66 . biological_region 28722 28724 0.999 + . logic_name=eponine scaffold_66 ensembl protein_coding_gene 20326 21360 . - . ID=Phyra81929;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000006;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 20326 21360 . - . ID=Phyra81929;Parent=Phyra81929;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 20326 21360 . - 0 ID=Phyra81929;Parent=Phyra81929;rank=1 scaffold_66 . exon 20326 21360 . - . ID=Phyra81929.1;Parent=Phyra81929;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 25535 26635 . - . ID=Phyra81930;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000007;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 25535 26635 . - . ID=Phyra81930;Parent=Phyra81930;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 25535 26635 . - 0 ID=Phyra81930;Parent=Phyra81930;rank=1 scaffold_66 . exon 25535 26635 . - . ID=Phyra81930.1;Parent=Phyra81930;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 27100 28016 . - . ID=Phyra81931;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000008;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 27100 28016 . - . ID=Phyra81931;Parent=Phyra81931;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 27100 27753 . - 0 ID=Phyra81931;Parent=Phyra81931;rank=2 scaffold_66 . exon 27100 27753 . - . ID=Phyra81931.2;Parent=Phyra81931;constitutive=1;rank=2 scaffold_66 . CDS 27834 28016 . - 0 ID=Phyra81931;Parent=Phyra81931;rank=1 scaffold_66 . exon 27834 28016 . - . ID=Phyra81931.1;Parent=Phyra81931;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 28969 29880 . - . ID=Phyra81932;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000009;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 28969 29880 . - . ID=Phyra81932;Parent=Phyra81932;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 28969 29616 . - 0 ID=Phyra81932;Parent=Phyra81932;rank=2 scaffold_66 . exon 28969 29616 . - . ID=Phyra81932.2;Parent=Phyra81932;constitutive=1;rank=2 scaffold_66 . CDS 29698 29880 . - 0 ID=Phyra81932;Parent=Phyra81932;rank=1 scaffold_66 . repeat_region 31975 32023 . ? . description=trf scaffold_66 . repeat_region 37932 37953 . ? . description=trf scaffold_66 . exon 29698 29880 . - . ID=Phyra81932.1;Parent=Phyra81932;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 30558 32934 . - . ID=Phyra81933;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000010;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 30558 32934 . - . ID=Phyra81933;Parent=Phyra81933;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 30558 30652 . - 0 ID=Phyra81933;Parent=Phyra81933;rank=2 scaffold_66 . exon 30558 30652 . - . ID=Phyra81933.2;Parent=Phyra81933;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 30735 32934 . - 0 ID=Phyra81933;Parent=Phyra81933;rank=1 scaffold_66 . exon 30735 32934 . - . ID=Phyra81933.1;Parent=Phyra81933;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 ensembl protein_coding_gene 33748 36780 . + . ID=Phyra81934;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000011;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 33748 36780 . + . ID=Phyra81934;Parent=Phyra81934;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 33748 36780 . + 0 ID=Phyra81934;Parent=Phyra81934;rank=1 scaffold_66 . exon 33748 36780 . + . ID=Phyra81934.1;Parent=Phyra81934;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 37006 39390 . - . ID=Phyra81935;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000012;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 37006 39390 . - . ID=Phyra81935;Parent=Phyra81935;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 37006 39390 . - 0 ID=Phyra81935;Parent=Phyra81935;rank=1 scaffold_66 . exon 37006 39390 . - . ID=Phyra81935.1;Parent=Phyra81935;constitutive=1;rank=1 scaffold_66 . biological_region 39208 39214 0.999 + . logic_name=eponine scaffold_66 . biological_region 39601 39605 0.999 + . logic_name=eponine scaffold_66 . repeat_region 39602 39615 . ? . description=dust scaffold_66 . biological_region 39668 39671 0.999 - . logic_name=eponine scaffold_66 . biological_region 39844 39848 0.999 + . logic_name=eponine scaffold_66 . biological_region 40095 40100 0.999 + . logic_name=eponine scaffold_66 . biological_region 40120 40123 0.999 + . logic_name=eponine scaffold_66 . biological_region 40228 40230 0.999 - . logic_name=eponine scaffold_66 . biological_region 41751 41751 0.999 - . logic_name=eponine scaffold_66 . repeat_region 42905 42920 . ? . description=dust scaffold_66 . biological_region 46455 46457 0.999 - . logic_name=eponine scaffold_66 ensembl protein_coding_gene 39812 41734 . - . ID=Phyra81936;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000013;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 39812 41734 . - . ID=Phyra81936;Parent=Phyra81936;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 39812 41734 . - 0 ID=Phyra81936;Parent=Phyra81936;rank=1 scaffold_66 . exon 39812 41734 . - . ID=Phyra81936.1;Parent=Phyra81936;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 44808 45510 . + . ID=Phyra81937;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000014;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 44808 45510 . + . ID=Phyra81937;Parent=Phyra81937;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 44808 44919 . + 0 ID=Phyra81937;Parent=Phyra81937;rank=1 scaffold_66 . exon 44808 44919 . + . ID=Phyra81937.1;Parent=Phyra81937;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 44990 45243 . + 0 ID=Phyra81937;Parent=Phyra81937;rank=2 scaffold_66 . exon 44990 45243 . + . ID=Phyra81937.2;Parent=Phyra81937;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 45337 45510 . + 0 ID=Phyra81937;Parent=Phyra81937;rank=3 scaffold_66 . exon 45337 45510 . + . ID=Phyra81937.3;Parent=Phyra81937;constitutive=1;rank=3 scaffold_66 ensembl protein_coding_gene 46164 47585 . + . ID=Phyra81938;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000015;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 46164 47585 . + . ID=Phyra81938;Parent=Phyra81938;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 46164 47585 . + 0 ID=Phyra81938;Parent=Phyra81938;rank=1 scaffold_66 . exon 46164 47585 . + . ID=Phyra81938.1;Parent=Phyra81938;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 53790 57433 . + . ID=Phyra52170;biotype=protein_coding;external_name=gwEuk.66.76.1;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 53790 57433 . + . ID=Phyra52170;Parent=Phyra52170;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 53790 55695 . + 0 ID=Phyra52170;Parent=Phyra52170;rank=1 scaffold_66 . exon 53790 55695 . + . ID=Phyra52170.1;Parent=Phyra52170;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 55738 56135 . + 0 ID=Phyra52170;Parent=Phyra52170;rank=2 scaffold_66 . exon 55738 56135 . + . ID=Phyra52170.2;Parent=Phyra52170;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 56542 57306 . + 0 ID=Phyra52170;Parent=Phyra52170;rank=3 scaffold_66 . exon 56542 57306 . + . ID=Phyra52170.3;Parent=Phyra52170;constitutive=1;rank=3 scaffold_66 . CDS 57380 57433 . + 0 ID=Phyra52170;Parent=Phyra52170;rank=4 scaffold_66 . exon 57380 57433 . + . ID=Phyra52170.4;Parent=Phyra52170;constitutive=1;rank=4 scaffold_66 ensembl protein_coding_gene 57792 60404 . - . ID=Phyra81941;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000018;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 57792 60404 . - . ID=Phyra81941;Parent=Phyra81941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 57792 60404 . - 0 ID=Phyra81941;Parent=Phyra81941;rank=1 scaffold_66 . exon 57792 60404 . - . ID=Phyra81941.1;Parent=Phyra81941;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 48712 52810 . - . ID=Phyra96152;biotype=protein_coding;external_name=C_scaffold_66000001;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 48712 52810 . - . ID=Phyra96152;Parent=Phyra96152;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 48712 48855 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=18 scaffold_66 . exon 48712 48855 . - . ID=Phyra96152.18;Parent=Phyra96152;constitutive=1;rank=18 scaffold_66 . CDS 48931 49081 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=17 scaffold_66 . exon 48931 49081 . - . ID=Phyra96152.17;Parent=Phyra96152;constitutive=1;ensembl_phase=2;rank=17 scaffold_66 . CDS 49153 49310 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=16 scaffold_66 . exon 49153 49310 . - . ID=Phyra96152.16;Parent=Phyra96152;constitutive=1;ensembl_end_phase=2;rank=16 scaffold_66 . CDS 49379 49459 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=15 scaffold_66 . exon 49379 49459 . - . ID=Phyra96152.15;Parent=Phyra96152;constitutive=1;rank=15 scaffold_66 . CDS 49529 49618 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=14 scaffold_66 . exon 49529 49618 . - . ID=Phyra96152.14;Parent=Phyra96152;constitutive=1;rank=14 scaffold_66 . CDS 49695 49754 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=13 scaffold_66 . exon 49695 49754 . - . ID=Phyra96152.13;Parent=Phyra96152;constitutive=1;rank=13 scaffold_66 . CDS 49842 49952 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=12 scaffold_66 . exon 49842 49952 . - . ID=Phyra96152.12;Parent=Phyra96152;constitutive=1;rank=12 scaffold_66 . CDS 50036 50155 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=11 scaffold_66 . exon 50036 50155 . - . ID=Phyra96152.11;Parent=Phyra96152;constitutive=1;rank=11 scaffold_66 . CDS 50270 50373 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=10 scaffold_66 . exon 50270 50373 . - . ID=Phyra96152.10;Parent=Phyra96152;constitutive=1;ensembl_phase=1;rank=10 scaffold_66 . CDS 50483 50609 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=9 scaffold_66 . exon 50483 50609 . - . ID=Phyra96152.9;Parent=Phyra96152;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_66 . CDS 50855 50858 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=8 scaffold_66 . exon 50855 50858 . - . ID=Phyra96152.8;Parent=Phyra96152;constitutive=1;ensembl_phase=2;rank=8 scaffold_66 . CDS 50942 51163 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=7 scaffold_66 . exon 50942 51163 . - . ID=Phyra96152.7;Parent=Phyra96152;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_66 . CDS 51234 51456 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=6 scaffold_66 . exon 51234 51456 . - . ID=Phyra96152.6;Parent=Phyra96152;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_66 . CDS 51511 51594 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=5 scaffold_66 . exon 51511 51594 . - . ID=Phyra96152.5;Parent=Phyra96152;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_66 . CDS 51634 51763 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=4 scaffold_66 . exon 51634 51763 . - . ID=Phyra96152.4;Parent=Phyra96152;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_66 . CDS 51899 52348 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=3 scaffold_66 . exon 51899 52348 . - . ID=Phyra96152.3;Parent=Phyra96152;constitutive=1;rank=3 scaffold_66 . CDS 52408 52613 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=2 scaffold_66 . exon 52408 52613 . - . ID=Phyra96152.2;Parent=Phyra96152;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 52678 52810 . - 0 ID=Phyra96152;Parent=Phyra96152;rank=1 scaffold_66 . exon 52678 52810 . - . ID=Phyra96152.1;Parent=Phyra96152;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . biological_region 59116 59119 0.999 + . logic_name=eponine scaffold_66 . repeat_region 59588 59634 . ? . description=trf scaffold_66 . repeat_region 63762 63777 . ? . description=dust scaffold_66 ensembl pseudogene 63611 64264 . + . ID=Phyra52174;biotype=pseudogene;external_name=gwEuk.66.80.1;logic_name=jgi_phyra1 scaffold_66 ensembl pseudogene 63611 64264 . + . ID=Phyra52174;Parent=Phyra52174;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_66 . exon 63611 64264 . + . ID=Phyra52174.1;Parent=Phyra52174;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 60851 61987 . + . ID=Phyra81942;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000019;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 60851 61987 . + . ID=Phyra81942;Parent=Phyra81942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 60851 61987 . + 0 ID=Phyra81942;Parent=Phyra81942;rank=1 scaffold_66 . exon 60851 61987 . + . ID=Phyra81942.1;Parent=Phyra81942;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 62421 63485 . - . ID=Phyra81943;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000020;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 62421 63485 . - . ID=Phyra81943;Parent=Phyra81943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 62421 62519 . - 0 ID=Phyra81943;Parent=Phyra81943;rank=4 scaffold_66 . exon 62421 62519 . - . ID=Phyra81943.4;Parent=Phyra81943;constitutive=1;rank=4 scaffold_66 . CDS 62592 62735 . - 0 ID=Phyra81943;Parent=Phyra81943;rank=3 scaffold_66 . exon 62592 62735 . - . ID=Phyra81943.3;Parent=Phyra81943;constitutive=1;rank=3 scaffold_66 . CDS 62797 63228 . - 0 ID=Phyra81943;Parent=Phyra81943;rank=2 scaffold_66 . exon 62797 63228 . - . ID=Phyra81943.2;Parent=Phyra81943;constitutive=1;rank=2 scaffold_66 . CDS 63306 63485 . - 0 ID=Phyra81943;Parent=Phyra81943;rank=1 scaffold_66 . exon 63306 63485 . - . ID=Phyra81943.1;Parent=Phyra81943;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 65580 69029 . - . ID=Phyra81944;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000021;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 65580 69029 . - . ID=Phyra81944;Parent=Phyra81944;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 65580 69029 . - 0 ID=Phyra81944;Parent=Phyra81944;rank=1 scaffold_66 . exon 65580 69029 . - . ID=Phyra81944.1;Parent=Phyra81944;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 70547 71929 . - . ID=Phyra52177;biotype=protein_coding;external_name=gwEuk.66.83.1;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 70547 71929 . - . ID=Phyra52177;Parent=Phyra52177;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 70547 71929 . - 0 ID=Phyra52177;Parent=Phyra52177;rank=1 scaffold_66 . exon 70547 71929 . - . ID=Phyra52177.1;Parent=Phyra52177;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 69411 69986 . + . ID=Phyra81945;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000022;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 69411 69986 . + . ID=Phyra81945;Parent=Phyra81945;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 69411 69986 . + 0 ID=Phyra81945;Parent=Phyra81945;rank=1 scaffold_66 . exon 69411 69986 . + . ID=Phyra81945.1;Parent=Phyra81945;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 72227 74475 . + . ID=Phyra81947;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000024;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 72227 74475 . + . ID=Phyra81947;Parent=Phyra81947;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 72227 73251 . + 0 ID=Phyra81947;Parent=Phyra81947;rank=1 scaffold_66 . exon 72227 73251 . + . ID=Phyra81947.1;Parent=Phyra81947;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . CDS 73424 74247 . + 0 ID=Phyra81947;Parent=Phyra81947;rank=2 scaffold_66 . exon 73424 74247 . + . ID=Phyra81947.2;Parent=Phyra81947;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 74378 74475 . + 0 ID=Phyra81947;Parent=Phyra81947;rank=3 scaffold_66 . exon 74378 74475 . + . ID=Phyra81947.3;Parent=Phyra81947;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 ensembl protein_coding_gene 75561 76799 . + . ID=Phyra96156;biotype=protein_coding;external_name=C_scaffold_66000005;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 75561 76799 . + . ID=Phyra96156;Parent=Phyra96156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 75561 75822 . + 0 ID=Phyra96156;Parent=Phyra96156;rank=1 scaffold_66 . exon 75561 75822 . + . ID=Phyra96156.1;Parent=Phyra96156;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 75892 76041 . + 0 ID=Phyra96156;Parent=Phyra96156;rank=2 scaffold_66 . exon 75892 76041 . + . ID=Phyra96156.2;Parent=Phyra96156;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 76069 76208 . + 0 ID=Phyra96156;Parent=Phyra96156;rank=3 scaffold_66 . exon 76069 76208 . + . ID=Phyra96156.3;Parent=Phyra96156;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 . CDS 76362 76534 . + 0 ID=Phyra96156;Parent=Phyra96156;rank=4 scaffold_66 . exon 76362 76534 . + . ID=Phyra96156.4;Parent=Phyra96156;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_66 . CDS 76676 76799 . + 0 ID=Phyra96156;Parent=Phyra96156;rank=5 scaffold_66 . exon 76676 76799 . + . ID=Phyra96156.5;Parent=Phyra96156;constitutive=1;ensembl_phase=2;rank=5 scaffold_66 ensembl protein_coding_gene 77467 79112 . - . ID=Phyra96157;biotype=protein_coding;external_name=C_scaffold_66000006;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 77467 79112 . - . ID=Phyra96157;Parent=Phyra96157;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 77467 77483 . - 0 ID=Phyra96157;Parent=Phyra96157;rank=4 scaffold_66 . exon 77467 77483 . - . ID=Phyra96157.4;Parent=Phyra96157;constitutive=1;ensembl_phase=1;rank=4 scaffold_66 . CDS 77615 77833 . - 0 ID=Phyra96157;Parent=Phyra96157;rank=3 scaffold_66 . exon 77615 77833 . - . ID=Phyra96157.3;Parent=Phyra96157;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_66 . CDS 77909 78935 . - 0 ID=Phyra96157;Parent=Phyra96157;rank=2 scaffold_66 . CDS 79011 79112 . - 0 ID=Phyra96157;Parent=Phyra96157;rank=1 scaffold_66 . biological_region 79228 79229 0.999 - . logic_name=eponine scaffold_66 . repeat_region 79388 79397 . ? . description=dust scaffold_66 . biological_region 83798 83801 0.999 + . logic_name=eponine scaffold_66 . biological_region 84087 84093 0.999 - . logic_name=eponine scaffold_66 ensembl protein_coding_gene 79581 79973 . - . ID=Phyra71971;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_66000002;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 79581 79973 . - . ID=Phyra71971;Parent=Phyra71971;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 79581 79973 . - 0 ID=Phyra71971;Parent=Phyra71971;rank=1 scaffold_66 . exon 79581 79973 . - . ID=Phyra71971.1;Parent=Phyra71971;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 80446 83709 . - . ID=Phyra81950;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000027;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 80446 83709 . - . ID=Phyra81950;Parent=Phyra81950;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 80446 83590 . - 0 ID=Phyra81950;Parent=Phyra81950;rank=2 scaffold_66 . exon 80446 83590 . - . ID=Phyra81950.2;Parent=Phyra81950;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 83660 83709 . - 0 ID=Phyra81950;Parent=Phyra81950;rank=1 scaffold_66 . exon 83660 83709 . - . ID=Phyra81950.1;Parent=Phyra81950;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . exon 77909 78935 . - . ID=Phyra96157.2;Parent=Phyra96157;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_66 . exon 79011 79112 . - . ID=Phyra96157.1;Parent=Phyra96157;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 84554 85501 . + . ID=Phyra96160;biotype=protein_coding;external_name=C_scaffold_66000009;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 84554 85501 . + . ID=Phyra96160;Parent=Phyra96160;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 84554 84649 . + 0 ID=Phyra96160;Parent=Phyra96160;rank=1 scaffold_66 . exon 84554 84649 . + . ID=Phyra96160.1;Parent=Phyra96160;constitutive=1;rank=1 scaffold_66 . CDS 84745 84911 . + 0 ID=Phyra96160;Parent=Phyra96160;rank=2 scaffold_66 . exon 84745 84911 . + . ID=Phyra96160.2;Parent=Phyra96160;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_66 . CDS 84987 85140 . + 0 ID=Phyra96160;Parent=Phyra96160;rank=3 scaffold_66 . exon 84987 85140 . + . ID=Phyra96160.3;Parent=Phyra96160;constitutive=1;ensembl_phase=2;rank=3 scaffold_66 . CDS 85205 85312 . + 0 ID=Phyra96160;Parent=Phyra96160;rank=4 scaffold_66 . exon 85205 85312 . + . ID=Phyra96160.4;Parent=Phyra96160;constitutive=1;rank=4 scaffold_66 . CDS 85460 85501 . + 0 ID=Phyra96160;Parent=Phyra96160;rank=5 scaffold_66 . exon 85460 85501 . + . ID=Phyra96160.5;Parent=Phyra96160;constitutive=1;rank=5 scaffold_66 ensembl protein_coding_gene 87103 88465 . - . ID=Phyra96161;biotype=protein_coding;external_name=C_scaffold_66000010;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 87103 88465 . - . ID=Phyra96161;Parent=Phyra96161;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 87103 87195 . - 0 ID=Phyra96161;Parent=Phyra96161;rank=5 scaffold_66 . exon 87103 87195 . - . ID=Phyra96161.5;Parent=Phyra96161;constitutive=1;rank=5 scaffold_66 . CDS 87261 87425 . - 0 ID=Phyra96161;Parent=Phyra96161;rank=4 scaffold_66 . exon 87261 87425 . - . ID=Phyra96161.4;Parent=Phyra96161;constitutive=1;rank=4 scaffold_66 . CDS 87699 87784 . - 0 ID=Phyra96161;Parent=Phyra96161;rank=3 scaffold_66 . CDS 87843 87981 . - 0 ID=Phyra96161;Parent=Phyra96161;rank=2 scaffold_66 . CDS 88085 88465 . - 0 ID=Phyra96161;Parent=Phyra96161;rank=1 scaffold_66 . repeat_region 93065 93086 . ? . description=trf scaffold_66 . repeat_region 94186 94212 . ? . description=trf scaffold_66 ensembl protein_coding_gene 88664 90153 . + . ID=Phyra81952;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000029;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 88664 90153 . + . ID=Phyra81952;Parent=Phyra81952;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 88664 88960 . + 0 ID=Phyra81952;Parent=Phyra81952;rank=1 scaffold_66 . exon 88664 88960 . + . ID=Phyra81952.1;Parent=Phyra81952;constitutive=1;rank=1 scaffold_66 . CDS 89032 89169 . + 0 ID=Phyra81952;Parent=Phyra81952;rank=2 scaffold_66 . exon 89032 89169 . + . ID=Phyra81952.2;Parent=Phyra81952;constitutive=1;rank=2 scaffold_66 . CDS 89268 89420 . + 0 ID=Phyra81952;Parent=Phyra81952;rank=3 scaffold_66 . exon 89268 89420 . + . ID=Phyra81952.3;Parent=Phyra81952;constitutive=1;rank=3 scaffold_66 . CDS 89506 90153 . + 0 ID=Phyra81952;Parent=Phyra81952;rank=4 scaffold_66 . exon 89506 90153 . + . ID=Phyra81952.4;Parent=Phyra81952;constitutive=1;rank=4 scaffold_66 ensembl protein_coding_gene 90711 91802 . + . ID=Phyra81953;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000030;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 90711 91802 . + . ID=Phyra81953;Parent=Phyra81953;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 90711 91802 . + 0 ID=Phyra81953;Parent=Phyra81953;rank=1 scaffold_66 . exon 90711 91802 . + . ID=Phyra81953.1;Parent=Phyra81953;constitutive=1;rank=1 scaffold_66 . exon 87699 87784 . - . ID=Phyra96161.3;Parent=Phyra96161;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 . exon 87843 87981 . - . ID=Phyra96161.2;Parent=Phyra96161;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_66 . exon 88085 88465 . - . ID=Phyra96161.1;Parent=Phyra96161;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 94179 98357 . - . ID=Phyra96163;biotype=protein_coding;external_name=C_scaffold_66000012;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 94179 98357 . - . ID=Phyra96163;Parent=Phyra96163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 94179 94328 . - 0 ID=Phyra96163;Parent=Phyra96163;rank=16 scaffold_66 . exon 94179 94328 . - . ID=Phyra96163.16;Parent=Phyra96163;constitutive=1;rank=16 scaffold_66 . CDS 94401 94458 . - 0 ID=Phyra96163;Parent=Phyra96163;rank=15 scaffold_66 . exon 94401 94458 . - . ID=Phyra96163.15;Parent=Phyra96163;constitutive=1;ensembl_phase=2;rank=15 scaffold_66 . CDS 94524 94613 . - 0 ID=Phyra96163;Parent=Phyra96163;rank=14 scaffold_66 . exon 94524 94613 . - . ID=Phyra96163.14;Parent=Phyra96163;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=14 scaffold_66 . CDS 94680 94861 . - 0 ID=Phyra96163;Parent=Phyra96163;rank=13 scaffold_66 . exon 94680 94861 . - . ID=Phyra96163.13;Parent=Phyra96163;constitutive=1;ensembl_end_phase=2;rank=13 scaffold_66 . CDS 95317 95462 . - 0 ID=Phyra96163;Parent=Phyra96163;rank=12 scaffold_66 . exon 95317 95462 . - . ID=Phyra96163.12;Parent=Phyra96163;constitutive=1;ensembl_phase=1;rank=12 scaffold_66 . CDS 95528 95614 . - 0 ID=Phyra96163;Parent=Phyra96163;rank=11 scaffold_66 . exon 95528 95614 . - . ID=Phyra96163.11;Parent=Phyra96163;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_66 . CDS 95782 95936 . - 0 ID=Phyra96163;Parent=Phyra96163;rank=10 scaffold_66 . exon 95782 95936 . - . ID=Phyra96163.10;Parent=Phyra96163;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_66 . CDS 96065 96303 . - 0 ID=Phyra96163;Parent=Phyra96163;rank=9 scaffold_66 . exon 96065 96303 . - . ID=Phyra96163.9;Parent=Phyra96163;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_66 . CDS 96346 96477 . - 0 ID=Phyra96163;Parent=Phyra96163;rank=8 scaffold_66 . exon 96346 96477 . - . ID=Phyra96163.8;Parent=Phyra96163;constitutive=1;rank=8 scaffold_66 . CDS 96775 96837 . - 0 ID=Phyra96163;Parent=Phyra96163;rank=7 scaffold_66 . exon 96775 96837 . - . ID=Phyra96163.7;Parent=Phyra96163;constitutive=1;rank=7 scaffold_66 . CDS 96909 96974 . - 0 ID=Phyra96163;Parent=Phyra96163;rank=6 scaffold_66 . exon 96909 96974 . - . ID=Phyra96163.6;Parent=Phyra96163;constitutive=1;rank=6 scaffold_66 . CDS 97119 97180 . - 0 ID=Phyra96163;Parent=Phyra96163;rank=5 scaffold_66 . exon 97119 97180 . - . ID=Phyra96163.5;Parent=Phyra96163;constitutive=1;ensembl_phase=1;rank=5 scaffold_66 . CDS 97251 97533 . - 0 ID=Phyra96163;Parent=Phyra96163;rank=4 scaffold_66 . exon 97251 97533 . - . ID=Phyra96163.4;Parent=Phyra96163;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_66 . CDS 97604 97785 . - 0 ID=Phyra96163;Parent=Phyra96163;rank=3 scaffold_66 . CDS 97851 98186 . - 0 ID=Phyra96163;Parent=Phyra96163;rank=2 scaffold_66 . CDS 98306 98357 . - 0 ID=Phyra96163;Parent=Phyra96163;rank=1 scaffold_66 . repeat_region 99868 99903 . ? . description=dust scaffold_66 . repeat_region 99868 99903 . + . description=(TCG)n scaffold_66 . biological_region 100447 100448 0.999 + . logic_name=eponine scaffold_66 . biological_region 101107 101110 0.999 - . logic_name=eponine scaffold_66 . biological_region 101256 101257 0.999 + . logic_name=eponine scaffold_66 . biological_region 101323 101328 0.999 - . logic_name=eponine scaffold_66 . biological_region 102960 102963 0.999 - . logic_name=eponine scaffold_66 . biological_region 103014 103016 0.999 - . logic_name=eponine scaffold_66 ensembl protein_coding_gene 100278 101288 . - . ID=Phyra81956;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000033;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 100278 101288 . - . ID=Phyra81956;Parent=Phyra81956;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 100278 101288 . - 0 ID=Phyra81956;Parent=Phyra81956;rank=1 scaffold_66 . exon 100278 101288 . - . ID=Phyra81956.1;Parent=Phyra81956;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 101918 103540 . + . ID=Phyra81957;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000034;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 101918 103540 . + . ID=Phyra81957;Parent=Phyra81957;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 101918 103540 . + 0 ID=Phyra81957;Parent=Phyra81957;rank=1 scaffold_66 . exon 101918 103540 . + . ID=Phyra81957.1;Parent=Phyra81957;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 104263 107363 . - . ID=Phyra81958;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000035;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 104263 107363 . - . ID=Phyra81958;Parent=Phyra81958;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 104263 104318 . - 0 ID=Phyra81958;Parent=Phyra81958;rank=6 scaffold_66 . exon 104263 104318 . - . ID=Phyra81958.6;Parent=Phyra81958;constitutive=1;ensembl_phase=1;rank=6 scaffold_66 . CDS 104365 104523 . - 0 ID=Phyra81958;Parent=Phyra81958;rank=5 scaffold_66 . exon 104365 104523 . - . ID=Phyra81958.5;Parent=Phyra81958;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_66 . CDS 104860 105016 . - 0 ID=Phyra81958;Parent=Phyra81958;rank=4 scaffold_66 . exon 104860 105016 . - . ID=Phyra81958.4;Parent=Phyra81958;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_66 . CDS 105096 105264 . - 0 ID=Phyra81958;Parent=Phyra81958;rank=3 scaffold_66 . exon 105096 105264 . - . ID=Phyra81958.3;Parent=Phyra81958;constitutive=1;ensembl_phase=2;rank=3 scaffold_66 . CDS 105343 106035 . - 0 ID=Phyra81958;Parent=Phyra81958;rank=2 scaffold_66 . exon 105343 106035 . - . ID=Phyra81958.2;Parent=Phyra81958;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_66 . CDS 106273 107363 . - 0 ID=Phyra81958;Parent=Phyra81958;rank=1 scaffold_66 . exon 106273 107363 . - . ID=Phyra81958.1;Parent=Phyra81958;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . exon 97604 97785 . - . ID=Phyra96163.3;Parent=Phyra96163;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 . exon 97851 98186 . - . ID=Phyra96163.2;Parent=Phyra96163;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_66 . exon 98306 98357 . - . ID=Phyra96163.1;Parent=Phyra96163;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 ensembl protein_coding_gene 98486 99307 . + . ID=Phyra96164;biotype=protein_coding;external_name=C_scaffold_66000013;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 98486 99307 . + . ID=Phyra96164;Parent=Phyra96164;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 98486 98662 . + 0 ID=Phyra96164;Parent=Phyra96164;rank=1 scaffold_66 . exon 98486 98662 . + . ID=Phyra96164.1;Parent=Phyra96164;constitutive=1;rank=1 scaffold_66 . CDS 98733 98776 . + 0 ID=Phyra96164;Parent=Phyra96164;rank=2 scaffold_66 . exon 98733 98776 . + . ID=Phyra96164.2;Parent=Phyra96164;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_66 . CDS 98848 98925 . + 0 ID=Phyra96164;Parent=Phyra96164;rank=3 scaffold_66 . exon 98848 98925 . + . ID=Phyra96164.3;Parent=Phyra96164;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_66 . CDS 98987 99130 . + 0 ID=Phyra96164;Parent=Phyra96164;rank=4 scaffold_66 . exon 98987 99130 . + . ID=Phyra96164.4;Parent=Phyra96164;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_66 . CDS 99196 99307 . + 0 ID=Phyra96164;Parent=Phyra96164;rank=5 scaffold_66 . exon 99196 99307 . + . ID=Phyra96164.5;Parent=Phyra96164;constitutive=1;ensembl_phase=2;rank=5 scaffold_66 . repeat_region 108063 108091 . ? . description=trf scaffold_66 ensembl protein_coding_gene 111358 112404 . + . ID=Phyra81959;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000036;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 111358 112404 . + . ID=Phyra81959;Parent=Phyra81959;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 111358 111755 . + 0 ID=Phyra81959;Parent=Phyra81959;rank=1 scaffold_66 . exon 111358 111755 . + . ID=Phyra81959.1;Parent=Phyra81959;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . CDS 111883 112252 . + 0 ID=Phyra81959;Parent=Phyra81959;rank=2 scaffold_66 . exon 111883 112252 . + . ID=Phyra81959.2;Parent=Phyra81959;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 112321 112404 . + 0 ID=Phyra81959;Parent=Phyra81959;rank=3 scaffold_66 . exon 112321 112404 . + . ID=Phyra81959.3;Parent=Phyra81959;constitutive=1;rank=3 scaffold_66 ensembl protein_coding_gene 112529 115498 . - . ID=Phyra81960;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000037;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 112529 115498 . - . ID=Phyra81960;Parent=Phyra81960;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 112529 114938 . - 0 ID=Phyra81960;Parent=Phyra81960;rank=2 scaffold_66 . exon 112529 114938 . - . ID=Phyra81960.2;Parent=Phyra81960;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 115014 115498 . - 0 ID=Phyra81960;Parent=Phyra81960;rank=1 scaffold_66 . exon 115014 115498 . - . ID=Phyra81960.1;Parent=Phyra81960;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 116767 117890 . - . ID=Phyra81961;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000038;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 116767 117890 . - . ID=Phyra81961;Parent=Phyra81961;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 116767 117219 . - 0 ID=Phyra81961;Parent=Phyra81961;rank=3 scaffold_66 . exon 116767 117219 . - . ID=Phyra81961.3;Parent=Phyra81961;constitutive=1;rank=3 scaffold_66 . CDS 117300 117380 . - 0 ID=Phyra81961;Parent=Phyra81961;rank=2 scaffold_66 . CDS 117465 117890 . - 0 ID=Phyra81961;Parent=Phyra81961;rank=1 scaffold_66 . exon 117300 117380 . - . ID=Phyra81961.2;Parent=Phyra81961;constitutive=1;rank=2 scaffold_66 . exon 117465 117890 . - . ID=Phyra81961.1;Parent=Phyra81961;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 118078 123592 . - . ID=Phyra96167;biotype=protein_coding;external_name=C_scaffold_66000016;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 118078 123592 . - . ID=Phyra96167;Parent=Phyra96167;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 118078 118088 . - 0 ID=Phyra96167;Parent=Phyra96167;rank=14 scaffold_66 . exon 118078 118088 . - . ID=Phyra96167.14;Parent=Phyra96167;constitutive=1;ensembl_phase=1;rank=14 scaffold_66 . CDS 118193 118502 . - 0 ID=Phyra96167;Parent=Phyra96167;rank=13 scaffold_66 . exon 118193 118502 . - . ID=Phyra96167.13;Parent=Phyra96167;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_66 . CDS 118773 118832 . - 0 ID=Phyra96167;Parent=Phyra96167;rank=12 scaffold_66 . exon 118773 118832 . - . ID=Phyra96167.12;Parent=Phyra96167;constitutive=1;rank=12 scaffold_66 . CDS 118857 119110 . - 0 ID=Phyra96167;Parent=Phyra96167;rank=11 scaffold_66 . exon 118857 119110 . - . ID=Phyra96167.11;Parent=Phyra96167;constitutive=1;ensembl_phase=1;rank=11 scaffold_66 . CDS 119489 120160 . - 0 ID=Phyra96167;Parent=Phyra96167;rank=10 scaffold_66 . exon 119489 120160 . - . ID=Phyra96167.10;Parent=Phyra96167;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_66 . CDS 120233 120765 . - 0 ID=Phyra96167;Parent=Phyra96167;rank=9 scaffold_66 . exon 120233 120765 . - . ID=Phyra96167.9;Parent=Phyra96167;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_66 . CDS 120834 120864 . - 0 ID=Phyra96167;Parent=Phyra96167;rank=8 scaffold_66 . exon 120834 120864 . - . ID=Phyra96167.8;Parent=Phyra96167;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_66 . CDS 121120 121207 . - 0 ID=Phyra96167;Parent=Phyra96167;rank=7 scaffold_66 . exon 121120 121207 . - . ID=Phyra96167.7;Parent=Phyra96167;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_66 . CDS 121273 121361 . - 0 ID=Phyra96167;Parent=Phyra96167;rank=6 scaffold_66 . exon 121273 121361 . - . ID=Phyra96167.6;Parent=Phyra96167;constitutive=1;ensembl_phase=1;rank=6 scaffold_66 . CDS 121431 121568 . - 0 ID=Phyra96167;Parent=Phyra96167;rank=5 scaffold_66 . exon 121431 121568 . - . ID=Phyra96167.5;Parent=Phyra96167;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_66 . CDS 122392 122591 . - 0 ID=Phyra96167;Parent=Phyra96167;rank=4 scaffold_66 . exon 122392 122591 . - . ID=Phyra96167.4;Parent=Phyra96167;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_66 . CDS 122657 123024 . - 0 ID=Phyra96167;Parent=Phyra96167;rank=3 scaffold_66 . exon 122657 123024 . - . ID=Phyra96167.3;Parent=Phyra96167;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_66 . CDS 123118 123271 . - 0 ID=Phyra96167;Parent=Phyra96167;rank=2 scaffold_66 . exon 123118 123271 . - . ID=Phyra96167.2;Parent=Phyra96167;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 123396 123592 . - 0 ID=Phyra96167;Parent=Phyra96167;rank=1 scaffold_66 . exon 123396 123592 . - . ID=Phyra96167.1;Parent=Phyra96167;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 124285 127176 . + . ID=Phyra96168;biotype=protein_coding;external_name=C_scaffold_66000017;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 124285 127176 . + . ID=Phyra96168;Parent=Phyra96168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 124285 124296 . + 0 ID=Phyra96168;Parent=Phyra96168;rank=1 scaffold_66 . exon 124285 124296 . + . ID=Phyra96168.1;Parent=Phyra96168;constitutive=1;rank=1 scaffold_66 . CDS 124469 125059 . + 0 ID=Phyra96168;Parent=Phyra96168;rank=2 scaffold_66 . exon 124469 125059 . + . ID=Phyra96168.2;Parent=Phyra96168;constitutive=1;rank=2 scaffold_66 . CDS 126277 126418 . + 0 ID=Phyra96168;Parent=Phyra96168;rank=3 scaffold_66 . exon 126277 126418 . + . ID=Phyra96168.3;Parent=Phyra96168;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_66 . CDS 126593 127176 . + 0 ID=Phyra96168;Parent=Phyra96168;rank=4 scaffold_66 . repeat_region 129313 129321 . ? . description=dust scaffold_66 . biological_region 132927 132929 0.999 + . logic_name=eponine scaffold_66 . repeat_region 133235 133294 . ? . description=trf scaffold_66 . biological_region 133591 133595 0.999 - . logic_name=eponine scaffold_66 . biological_region 133644 133649 0.999 + . logic_name=eponine scaffold_66 . biological_region 133947 133950 0.999 - . logic_name=eponine scaffold_66 ensembl protein_coding_gene 134107 136021 . + . ID=Phyra81966;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000043;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 134107 136021 . + . ID=Phyra81966;Parent=Phyra81966;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 134107 134754 . + 0 ID=Phyra81966;Parent=Phyra81966;rank=1 scaffold_66 . exon 134107 134754 . + . ID=Phyra81966.1;Parent=Phyra81966;constitutive=1;rank=1 scaffold_66 . CDS 134819 135103 . + 0 ID=Phyra81966;Parent=Phyra81966;rank=2 scaffold_66 . exon 134819 135103 . + . ID=Phyra81966.2;Parent=Phyra81966;constitutive=1;rank=2 scaffold_66 . CDS 135329 135583 . + 0 ID=Phyra81966;Parent=Phyra81966;rank=3 scaffold_66 . exon 135329 135583 . + . ID=Phyra81966.3;Parent=Phyra81966;constitutive=1;rank=3 scaffold_66 . CDS 135662 136021 . + 0 ID=Phyra81966;Parent=Phyra81966;rank=4 scaffold_66 . exon 135662 136021 . + . ID=Phyra81966.4;Parent=Phyra81966;constitutive=1;rank=4 scaffold_66 . exon 126593 127176 . + . ID=Phyra96168.4;Parent=Phyra96168;constitutive=1;ensembl_phase=1;rank=4 scaffold_66 ensembl protein_coding_gene 128352 132863 . + . ID=Phyra96169;biotype=protein_coding;external_name=C_scaffold_66000018;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 128352 132863 . + . ID=Phyra96169;Parent=Phyra96169;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 128352 128403 . + 0 ID=Phyra96169;Parent=Phyra96169;rank=1 scaffold_66 . exon 128352 128403 . + . ID=Phyra96169.1;Parent=Phyra96169;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 128741 128845 . + 0 ID=Phyra96169;Parent=Phyra96169;rank=2 scaffold_66 . exon 128741 128845 . + . ID=Phyra96169.2;Parent=Phyra96169;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 128999 129044 . + 0 ID=Phyra96169;Parent=Phyra96169;rank=3 scaffold_66 . exon 128999 129044 . + . ID=Phyra96169.3;Parent=Phyra96169;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_66 . CDS 129150 129265 . + 0 ID=Phyra96169;Parent=Phyra96169;rank=4 scaffold_66 . exon 129150 129265 . + . ID=Phyra96169.4;Parent=Phyra96169;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_66 . CDS 129463 129515 . + 0 ID=Phyra96169;Parent=Phyra96169;rank=5 scaffold_66 . exon 129463 129515 . + . ID=Phyra96169.5;Parent=Phyra96169;constitutive=1;ensembl_phase=1;rank=5 scaffold_66 . CDS 129573 129894 . + 0 ID=Phyra96169;Parent=Phyra96169;rank=6 scaffold_66 . exon 129573 129894 . + . ID=Phyra96169.6;Parent=Phyra96169;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_66 . CDS 130151 130163 . + 0 ID=Phyra96169;Parent=Phyra96169;rank=7 scaffold_66 . exon 130151 130163 . + . ID=Phyra96169.7;Parent=Phyra96169;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_66 . CDS 130337 130586 . + 0 ID=Phyra96169;Parent=Phyra96169;rank=8 scaffold_66 . exon 130337 130586 . + . ID=Phyra96169.8;Parent=Phyra96169;constitutive=1;ensembl_phase=2;rank=8 scaffold_66 . CDS 130794 131004 . + 0 ID=Phyra96169;Parent=Phyra96169;rank=9 scaffold_66 . exon 130794 131004 . + . ID=Phyra96169.9;Parent=Phyra96169;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_66 . CDS 131029 131312 . + 0 ID=Phyra96169;Parent=Phyra96169;rank=10 scaffold_66 . exon 131029 131312 . + . ID=Phyra96169.10;Parent=Phyra96169;constitutive=1;ensembl_phase=1;rank=10 scaffold_66 . CDS 131395 131872 . + 0 ID=Phyra96169;Parent=Phyra96169;rank=11 scaffold_66 . exon 131395 131872 . + . ID=Phyra96169.11;Parent=Phyra96169;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_66 . CDS 132032 132818 . + 0 ID=Phyra96169;Parent=Phyra96169;rank=12 scaffold_66 . exon 132032 132818 . + . ID=Phyra96169.12;Parent=Phyra96169;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_66 . CDS 132854 132863 . + 0 ID=Phyra96169;Parent=Phyra96169;rank=13 scaffold_66 . exon 132854 132863 . + . ID=Phyra96169.13;Parent=Phyra96169;constitutive=1;ensembl_phase=2;rank=13 scaffold_66 ensembl protein_coding_gene 133219 133948 . - . ID=Phyra96170;biotype=protein_coding;external_name=C_scaffold_66000019;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 133219 133948 . - . ID=Phyra96170;Parent=Phyra96170;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 133219 133372 . - 0 ID=Phyra96170;Parent=Phyra96170;rank=3 scaffold_66 . exon 133219 133372 . - . ID=Phyra96170.3;Parent=Phyra96170;constitutive=1;ensembl_phase=2;rank=3 scaffold_66 . CDS 133447 133755 . - 0 ID=Phyra96170;Parent=Phyra96170;rank=2 scaffold_66 . exon 133447 133755 . - . ID=Phyra96170.2;Parent=Phyra96170;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_66 . CDS 133842 133948 . - 0 ID=Phyra96170;Parent=Phyra96170;rank=1 scaffold_66 . exon 133842 133948 . - . ID=Phyra96170.1;Parent=Phyra96170;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 144874 146605 . + . ID=Phyra52194;biotype=protein_coding;external_name=gwEuk.66.100.1;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 144874 146605 . + . ID=Phyra52194;Parent=Phyra52194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 144874 145636 . + 0 ID=Phyra52194;Parent=Phyra52194;rank=1 scaffold_66 . exon 144874 145636 . + . ID=Phyra52194.1;Parent=Phyra52194;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 145720 145964 . + 0 ID=Phyra52194;Parent=Phyra52194;rank=2 scaffold_66 . exon 145720 145964 . + . ID=Phyra52194.2;Parent=Phyra52194;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 146031 146153 . + 0 ID=Phyra52194;Parent=Phyra52194;rank=3 scaffold_66 . CDS 146224 146342 . + 0 ID=Phyra52194;Parent=Phyra52194;rank=4 scaffold_66 . CDS 146413 146605 . + 0 ID=Phyra52194;Parent=Phyra52194;rank=5 scaffold_66 ensembl protein_coding_gene 137821 138990 . - . ID=Phyra81967;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000044;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 137821 138990 . - . ID=Phyra81967;Parent=Phyra81967;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 137821 137838 . - 0 ID=Phyra81967;Parent=Phyra81967;rank=5 scaffold_66 . exon 137821 137838 . - . ID=Phyra81967.5;Parent=Phyra81967;constitutive=1;rank=5 scaffold_66 . CDS 137861 138120 . - 0 ID=Phyra81967;Parent=Phyra81967;rank=4 scaffold_66 . exon 137861 138120 . - . ID=Phyra81967.4;Parent=Phyra81967;constitutive=1;ensembl_phase=1;rank=4 scaffold_66 . CDS 138178 138304 . - 0 ID=Phyra81967;Parent=Phyra81967;rank=3 scaffold_66 . exon 138178 138304 . - . ID=Phyra81967.3;Parent=Phyra81967;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_66 . CDS 138364 138546 . - 0 ID=Phyra81967;Parent=Phyra81967;rank=2 scaffold_66 . exon 138364 138546 . - . ID=Phyra81967.2;Parent=Phyra81967;constitutive=1;rank=2 scaffold_66 . CDS 138760 138990 . - 0 ID=Phyra81967;Parent=Phyra81967;rank=1 scaffold_66 . exon 138760 138990 . - . ID=Phyra81967.1;Parent=Phyra81967;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 142166 143116 . + . ID=Phyra81968;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000045;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 142166 143116 . + . ID=Phyra81968;Parent=Phyra81968;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 142166 142661 . + 0 ID=Phyra81968;Parent=Phyra81968;rank=1 scaffold_66 . exon 142166 142661 . + . ID=Phyra81968.1;Parent=Phyra81968;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 142735 142829 . + 0 ID=Phyra81968;Parent=Phyra81968;rank=2 scaffold_66 . exon 142735 142829 . + . ID=Phyra81968.2;Parent=Phyra81968;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 142895 143116 . + 0 ID=Phyra81968;Parent=Phyra81968;rank=3 scaffold_66 . exon 142895 143116 . + . ID=Phyra81968.3;Parent=Phyra81968;constitutive=1;rank=3 scaffold_66 ensembl protein_coding_gene 143259 144270 . + . ID=Phyra81969;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000046;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 143259 144270 . + . ID=Phyra81969;Parent=Phyra81969;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 143259 143504 . + 0 ID=Phyra81969;Parent=Phyra81969;rank=1 scaffold_66 . exon 143259 143504 . + . ID=Phyra81969.1;Parent=Phyra81969;constitutive=1;rank=1 scaffold_66 . CDS 143579 143698 . + 0 ID=Phyra81969;Parent=Phyra81969;rank=2 scaffold_66 . exon 143579 143698 . + . ID=Phyra81969.2;Parent=Phyra81969;constitutive=1;rank=2 scaffold_66 . CDS 143787 143942 . + 0 ID=Phyra81969;Parent=Phyra81969;rank=3 scaffold_66 . exon 143787 143942 . + . ID=Phyra81969.3;Parent=Phyra81969;constitutive=1;rank=3 scaffold_66 . CDS 144024 144110 . + 0 ID=Phyra81969;Parent=Phyra81969;rank=4 scaffold_66 . exon 144024 144110 . + . ID=Phyra81969.4;Parent=Phyra81969;constitutive=1;rank=4 scaffold_66 . CDS 144184 144270 . + 0 ID=Phyra81969;Parent=Phyra81969;rank=5 scaffold_66 . exon 144184 144270 . + . ID=Phyra81969.5;Parent=Phyra81969;constitutive=1;rank=5 scaffold_66 . biological_region 147736 147739 0.999 - . logic_name=eponine scaffold_66 . biological_region 150309 150312 0.999 + . logic_name=eponine scaffold_66 . biological_region 150505 150509 0.999 - . logic_name=eponine scaffold_66 . repeat_region 150612 150641 . ? . description=trf scaffold_66 . repeat_region 150992 151073 . ? . description=trf scaffold_66 . exon 146031 146153 . + . ID=Phyra52194.3;Parent=Phyra52194;constitutive=1;rank=3 scaffold_66 . exon 146224 146342 . + . ID=Phyra52194.4;Parent=Phyra52194;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_66 . exon 146413 146605 . + . ID=Phyra52194.5;Parent=Phyra52194;constitutive=1;ensembl_phase=2;rank=5 scaffold_66 ensembl protein_coding_gene 151305 151673 . + . ID=Phyra52195;biotype=protein_coding;external_name=gwEuk.66.101.1;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 151305 151673 . + . ID=Phyra52195;Parent=Phyra52195;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 151305 151673 . + 0 ID=Phyra52195;Parent=Phyra52195;rank=1 scaffold_66 . exon 151305 151673 . + . ID=Phyra52195.1;Parent=Phyra52195;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 151852 152804 . - . ID=Phyra71973;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_66000004;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 151852 152804 . - . ID=Phyra71973;Parent=Phyra71973;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 151852 151974 . - 0 ID=Phyra71973;Parent=Phyra71973;rank=6 scaffold_66 . exon 151852 151974 . - . ID=Phyra71973.6;Parent=Phyra71973;constitutive=1;rank=6 scaffold_66 . CDS 152040 152198 . - 0 ID=Phyra71973;Parent=Phyra71973;rank=5 scaffold_66 . exon 152040 152198 . - . ID=Phyra71973.5;Parent=Phyra71973;constitutive=1;rank=5 scaffold_66 . CDS 152270 152317 . - 0 ID=Phyra71973;Parent=Phyra71973;rank=4 scaffold_66 . exon 152270 152317 . - . ID=Phyra71973.4;Parent=Phyra71973;constitutive=1;rank=4 scaffold_66 . CDS 152398 152592 . - 0 ID=Phyra71973;Parent=Phyra71973;rank=3 scaffold_66 . exon 152398 152592 . - . ID=Phyra71973.3;Parent=Phyra71973;constitutive=1;rank=3 scaffold_66 . CDS 152621 152647 . - 0 ID=Phyra71973;Parent=Phyra71973;rank=2 scaffold_66 . exon 152621 152647 . - . ID=Phyra71973.2;Parent=Phyra71973;constitutive=1;rank=2 scaffold_66 . CDS 152673 152804 . - 0 ID=Phyra71973;Parent=Phyra71973;rank=1 scaffold_66 . exon 152673 152804 . - . ID=Phyra71973.1;Parent=Phyra71973;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 146773 150663 . - . ID=Phyra81971;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000048;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 146773 150663 . - . ID=Phyra81971;Parent=Phyra81971;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 146773 150663 . - 0 ID=Phyra81971;Parent=Phyra81971;rank=1 scaffold_66 . exon 146773 150663 . - . ID=Phyra81971.1;Parent=Phyra81971;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 152983 155092 . + . ID=Phyra81974;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000051;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 152983 155092 . + . ID=Phyra81974;Parent=Phyra81974;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 152983 153201 . + 0 ID=Phyra81974;Parent=Phyra81974;rank=1 scaffold_66 . exon 152983 153201 . + . ID=Phyra81974.1;Parent=Phyra81974;constitutive=1;rank=1 scaffold_66 . CDS 153261 153580 . + 0 ID=Phyra81974;Parent=Phyra81974;rank=2 scaffold_66 . exon 153261 153580 . + . ID=Phyra81974.2;Parent=Phyra81974;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_66 . CDS 153641 153734 . + 0 ID=Phyra81974;Parent=Phyra81974;rank=3 scaffold_66 . exon 153641 153734 . + . ID=Phyra81974.3;Parent=Phyra81974;constitutive=1;ensembl_phase=2;rank=3 scaffold_66 . CDS 153812 155092 . + 0 ID=Phyra81974;Parent=Phyra81974;rank=4 scaffold_66 . exon 153812 155092 . + . ID=Phyra81974.4;Parent=Phyra81974;constitutive=1;rank=4 scaffold_66 . repeat_region 156452 156459 . ? . description=dust scaffold_66 . repeat_region 162166 162173 . ? . description=dust scaffold_66 ensembl protein_coding_gene 159885 160715 . - . ID=Phyra71974;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_66000005;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 159885 160715 . - . ID=Phyra71974;Parent=Phyra71974;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 159885 160106 . - 0 ID=Phyra71974;Parent=Phyra71974;rank=5 scaffold_66 . exon 159885 160106 . - . ID=Phyra71974.5;Parent=Phyra71974;constitutive=1;rank=5 scaffold_66 . CDS 160172 160261 . - 0 ID=Phyra71974;Parent=Phyra71974;rank=4 scaffold_66 . exon 160172 160261 . - . ID=Phyra71974.4;Parent=Phyra71974;constitutive=1;rank=4 scaffold_66 . CDS 160330 160402 . - 0 ID=Phyra71974;Parent=Phyra71974;rank=3 scaffold_66 . exon 160330 160402 . - . ID=Phyra71974.3;Parent=Phyra71974;constitutive=1;ensembl_phase=2;rank=3 scaffold_66 . CDS 160470 160580 . - 0 ID=Phyra71974;Parent=Phyra71974;rank=2 scaffold_66 . exon 160470 160580 . - . ID=Phyra71974.2;Parent=Phyra71974;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_66 . CDS 160651 160715 . - 0 ID=Phyra71974;Parent=Phyra71974;rank=1 scaffold_66 . exon 160651 160715 . - . ID=Phyra71974.1;Parent=Phyra71974;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 163683 165524 . + . ID=Phyra71975;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_66000006;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 163683 165524 . + . ID=Phyra71975;Parent=Phyra71975;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 163683 163709 . + 0 ID=Phyra71975;Parent=Phyra71975;rank=1 scaffold_66 . exon 163683 163709 . + . ID=Phyra71975.1;Parent=Phyra71975;constitutive=1;rank=1 scaffold_66 . CDS 163875 165524 . + 0 ID=Phyra71975;Parent=Phyra71975;rank=2 scaffold_66 . exon 163875 165524 . + . ID=Phyra71975.2;Parent=Phyra71975;constitutive=1;rank=2 scaffold_66 ensembl protein_coding_gene 158028 159753 . - . ID=Phyra81975;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000052;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 158028 159753 . - . ID=Phyra81975;Parent=Phyra81975;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 158028 158036 . - 0 ID=Phyra81975;Parent=Phyra81975;rank=2 scaffold_66 . exon 158028 158036 . - . ID=Phyra81975.2;Parent=Phyra81975;constitutive=1;rank=2 scaffold_66 . CDS 158482 159753 . - 0 ID=Phyra81975;Parent=Phyra81975;rank=1 scaffold_66 . exon 158482 159753 . - . ID=Phyra81975.1;Parent=Phyra81975;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 162208 163226 . + . ID=Phyra81977;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000054;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 162208 163226 . + . ID=Phyra81977;Parent=Phyra81977;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 162208 162309 . + 0 ID=Phyra81977;Parent=Phyra81977;rank=1 scaffold_66 . exon 162208 162309 . + . ID=Phyra81977.1;Parent=Phyra81977;constitutive=1;rank=1 scaffold_66 . CDS 162368 162535 . + 0 ID=Phyra81977;Parent=Phyra81977;rank=2 scaffold_66 . exon 162368 162535 . + . ID=Phyra81977.2;Parent=Phyra81977;constitutive=1;rank=2 scaffold_66 . CDS 162638 162751 . + 0 ID=Phyra81977;Parent=Phyra81977;rank=3 scaffold_66 . exon 162638 162751 . + . ID=Phyra81977.3;Parent=Phyra81977;constitutive=1;rank=3 scaffold_66 . CDS 162830 162903 . + 0 ID=Phyra81977;Parent=Phyra81977;rank=4 scaffold_66 . exon 162830 162903 . + . ID=Phyra81977.4;Parent=Phyra81977;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_66 . CDS 162998 163226 . + 0 ID=Phyra81977;Parent=Phyra81977;rank=5 scaffold_66 . exon 162998 163226 . + . ID=Phyra81977.5;Parent=Phyra81977;constitutive=1;ensembl_phase=2;rank=5 scaffold_66 ensembl protein_coding_gene 166448 167062 . + . ID=Phyra96172;biotype=protein_coding;external_name=C_scaffold_66000021;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 166448 167062 . + . ID=Phyra96172;Parent=Phyra96172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 166448 166623 . + 0 ID=Phyra96172;Parent=Phyra96172;rank=1 scaffold_66 . exon 166448 166623 . + . ID=Phyra96172.1;Parent=Phyra96172;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . CDS 166697 166808 . + 0 ID=Phyra96172;Parent=Phyra96172;rank=2 scaffold_66 . exon 166697 166808 . + . ID=Phyra96172.2;Parent=Phyra96172;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 166878 167000 . + 0 ID=Phyra96172;Parent=Phyra96172;rank=3 scaffold_66 . exon 166878 167000 . + . ID=Phyra96172.3;Parent=Phyra96172;constitutive=1;rank=3 scaffold_66 . CDS 167042 167062 . + 0 ID=Phyra96172;Parent=Phyra96172;rank=4 scaffold_66 . exon 167042 167062 . + . ID=Phyra96172.4;Parent=Phyra96172;constitutive=1;rank=4 scaffold_66 ensembl protein_coding_gene 167355 171218 . - . ID=Phyra96173;biotype=protein_coding;external_name=C_scaffold_66000022;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 167355 171218 . - . ID=Phyra96173;Parent=Phyra96173;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 167355 169219 . - 0 ID=Phyra96173;Parent=Phyra96173;rank=4 scaffold_66 . exon 167355 169219 . - . ID=Phyra96173.4;Parent=Phyra96173;constitutive=1;ensembl_phase=1;rank=4 scaffold_66 . CDS 169289 170949 . - 0 ID=Phyra96173;Parent=Phyra96173;rank=3 scaffold_66 . exon 169289 170949 . - . ID=Phyra96173.3;Parent=Phyra96173;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_66 . CDS 171014 171111 . - 0 ID=Phyra96173;Parent=Phyra96173;rank=2 scaffold_66 . exon 171014 171111 . - . ID=Phyra96173.2;Parent=Phyra96173;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_66 . CDS 171177 171218 . - 0 ID=Phyra96173;Parent=Phyra96173;rank=1 scaffold_66 . exon 171177 171218 . - . ID=Phyra96173.1;Parent=Phyra96173;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 171407 172293 . + . ID=Phyra96174;biotype=protein_coding;external_name=C_scaffold_66000023;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 171407 172293 . + . ID=Phyra96174;Parent=Phyra96174;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 171407 171415 . + 0 ID=Phyra96174;Parent=Phyra96174;rank=1 scaffold_66 . exon 171407 171415 . + . ID=Phyra96174.1;Parent=Phyra96174;constitutive=1;rank=1 scaffold_66 . CDS 171462 171718 . + 0 ID=Phyra96174;Parent=Phyra96174;rank=2 scaffold_66 . exon 171462 171718 . + . ID=Phyra96174.2;Parent=Phyra96174;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_66 . CDS 171788 171894 . + 0 ID=Phyra96174;Parent=Phyra96174;rank=3 scaffold_66 . exon 171788 171894 . + . ID=Phyra96174.3;Parent=Phyra96174;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_66 . CDS 171966 172063 . + 0 ID=Phyra96174;Parent=Phyra96174;rank=4 scaffold_66 . exon 171966 172063 . + . ID=Phyra96174.4;Parent=Phyra96174;constitutive=1;ensembl_phase=1;rank=4 scaffold_66 . CDS 172270 172293 . + 0 ID=Phyra96174;Parent=Phyra96174;rank=5 scaffold_66 . exon 172270 172293 . + . ID=Phyra96174.5;Parent=Phyra96174;constitutive=1;rank=5 scaffold_66 . biological_region 178049 178050 0.999 + . logic_name=eponine scaffold_66 . repeat_region 178230 178263 . ? . description=trf scaffold_66 . repeat_region 178230 178263 . ? . description=dust scaffold_66 . repeat_region 178232 178263 . ? . description=trf scaffold_66 . biological_region 178656 178659 0.999 + . logic_name=eponine scaffold_66 . biological_region 178697 178698 0.999 + . logic_name=eponine scaffold_66 . biological_region 179649 179649 0.999 + . logic_name=eponine scaffold_66 . biological_region 181554 181557 0.999 + . logic_name=eponine scaffold_66 . biological_region 181688 181690 0.999 - . logic_name=eponine scaffold_66 . repeat_region 181883 181905 . ? . description=trf scaffold_66 . biological_region 182689 182692 0.999 + . logic_name=eponine scaffold_66 . biological_region 183226 183226 0.999 + . logic_name=eponine scaffold_66 . biological_region 184571 184579 0.999 - . logic_name=eponine scaffold_66 ensembl protein_coding_gene 178769 179866 . + . ID=Phyra81983;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000060;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 178769 179866 . + . ID=Phyra81983;Parent=Phyra81983;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 178769 179866 . + 0 ID=Phyra81983;Parent=Phyra81983;rank=1 scaffold_66 . exon 178769 179866 . + . ID=Phyra81983.1;Parent=Phyra81983;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 180279 181877 . - . ID=Phyra81984;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000061;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 180279 181877 . - . ID=Phyra81984;Parent=Phyra81984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 180279 181877 . - 0 ID=Phyra81984;Parent=Phyra81984;rank=1 scaffold_66 . exon 180279 181877 . - . ID=Phyra81984.1;Parent=Phyra81984;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 175517 177175 . + . ID=Phyra96175;biotype=protein_coding;external_name=C_scaffold_66000024;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 175517 177175 . + . ID=Phyra96175;Parent=Phyra96175;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 175517 175769 . + 0 ID=Phyra96175;Parent=Phyra96175;rank=1 scaffold_66 . exon 175517 175769 . + . ID=Phyra96175.1;Parent=Phyra96175;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 175809 175936 . + 0 ID=Phyra96175;Parent=Phyra96175;rank=2 scaffold_66 . exon 175809 175936 . + . ID=Phyra96175.2;Parent=Phyra96175;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 176006 176155 . + 0 ID=Phyra96175;Parent=Phyra96175;rank=3 scaffold_66 . exon 176006 176155 . + . ID=Phyra96175.3;Parent=Phyra96175;constitutive=1;rank=3 scaffold_66 . CDS 176476 176925 . + 0 ID=Phyra96175;Parent=Phyra96175;rank=4 scaffold_66 . exon 176476 176925 . + . ID=Phyra96175.4;Parent=Phyra96175;constitutive=1;rank=4 scaffold_66 . CDS 177173 177175 . + 0 ID=Phyra96175;Parent=Phyra96175;rank=5 scaffold_66 . exon 177173 177175 . + . ID=Phyra96175.5;Parent=Phyra96175;constitutive=1;rank=5 scaffold_66 ensembl protein_coding_gene 177626 178339 . - . ID=Phyra96177;biotype=protein_coding;external_name=C_scaffold_66000026;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 177626 178339 . - . ID=Phyra96177;Parent=Phyra96177;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 177626 177861 . - 0 ID=Phyra96177;Parent=Phyra96177;rank=2 scaffold_66 . exon 177626 177861 . - . ID=Phyra96177.2;Parent=Phyra96177;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 177889 178339 . - 0 ID=Phyra96177;Parent=Phyra96177;rank=1 scaffold_66 . exon 177889 178339 . - . ID=Phyra96177.1;Parent=Phyra96177;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 ensembl protein_coding_gene 182447 184477 . - . ID=Phyra96181;biotype=protein_coding;external_name=C_scaffold_66000030;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 182447 184477 . - . ID=Phyra96181;Parent=Phyra96181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 182447 182604 . - 0 ID=Phyra96181;Parent=Phyra96181;rank=6 scaffold_66 . exon 182447 182604 . - . ID=Phyra96181.6;Parent=Phyra96181;constitutive=1;ensembl_phase=1;rank=6 scaffold_66 . CDS 182670 182864 . - 0 ID=Phyra96181;Parent=Phyra96181;rank=5 scaffold_66 . exon 182670 182864 . - . ID=Phyra96181.5;Parent=Phyra96181;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_66 . CDS 182934 183857 . - 0 ID=Phyra96181;Parent=Phyra96181;rank=4 scaffold_66 . exon 182934 183857 . - . ID=Phyra96181.4;Parent=Phyra96181;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_66 . CDS 183929 184025 . - 0 ID=Phyra96181;Parent=Phyra96181;rank=3 scaffold_66 . exon 183929 184025 . - . ID=Phyra96181.3;Parent=Phyra96181;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_66 . CDS 184095 184169 . - 0 ID=Phyra96181;Parent=Phyra96181;rank=2 scaffold_66 . exon 184095 184169 . - . ID=Phyra96181.2;Parent=Phyra96181;constitutive=1;rank=2 scaffold_66 . CDS 184328 184477 . - 0 ID=Phyra96181;Parent=Phyra96181;rank=1 scaffold_66 . exon 184328 184477 . - . ID=Phyra96181.1;Parent=Phyra96181;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 184770 187405 . + . ID=Phyra96182;biotype=protein_coding;external_name=C_scaffold_66000031;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 184770 187405 . + . ID=Phyra96182;Parent=Phyra96182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 184770 184997 . + 0 ID=Phyra96182;Parent=Phyra96182;rank=1 scaffold_66 . exon 184770 184997 . + . ID=Phyra96182.1;Parent=Phyra96182;constitutive=1;rank=1 scaffold_66 . CDS 185037 185613 . + 0 ID=Phyra96182;Parent=Phyra96182;rank=2 scaffold_66 . CDS 185770 186083 . + 0 ID=Phyra96182;Parent=Phyra96182;rank=3 scaffold_66 . CDS 186463 186720 . + 0 ID=Phyra96182;Parent=Phyra96182;rank=4 scaffold_66 . CDS 186794 187405 . + 0 ID=Phyra96182;Parent=Phyra96182;rank=5 scaffold_66 ensembl protein_coding_gene 187482 189549 . - . ID=Phyra71978;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_66000009;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 187482 189549 . - . ID=Phyra71978;Parent=Phyra71978;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 187482 187583 . - 0 ID=Phyra71978;Parent=Phyra71978;rank=10 scaffold_66 . exon 187482 187583 . - . ID=Phyra71978.10;Parent=Phyra71978;constitutive=1;rank=10 scaffold_66 . CDS 187660 187773 . - 0 ID=Phyra71978;Parent=Phyra71978;rank=9 scaffold_66 . exon 187660 187773 . - . ID=Phyra71978.9;Parent=Phyra71978;constitutive=1;rank=9 scaffold_66 . CDS 187955 188042 . - 0 ID=Phyra71978;Parent=Phyra71978;rank=8 scaffold_66 . exon 187955 188042 . - . ID=Phyra71978.8;Parent=Phyra71978;constitutive=1;ensembl_phase=2;rank=8 scaffold_66 . CDS 188121 188252 . - 0 ID=Phyra71978;Parent=Phyra71978;rank=7 scaffold_66 . exon 188121 188252 . - . ID=Phyra71978.7;Parent=Phyra71978;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_66 . CDS 188338 188568 . - 0 ID=Phyra71978;Parent=Phyra71978;rank=6 scaffold_66 . exon 188338 188568 . - . ID=Phyra71978.6;Parent=Phyra71978;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_66 . CDS 188646 188761 . - 0 ID=Phyra71978;Parent=Phyra71978;rank=5 scaffold_66 . exon 188646 188761 . - . ID=Phyra71978.5;Parent=Phyra71978;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_66 . CDS 188830 188987 . - 0 ID=Phyra71978;Parent=Phyra71978;rank=4 scaffold_66 . exon 188830 188987 . - . ID=Phyra71978.4;Parent=Phyra71978;constitutive=1;ensembl_phase=1;rank=4 scaffold_66 . CDS 189067 189131 . - 0 ID=Phyra71978;Parent=Phyra71978;rank=3 scaffold_66 . exon 189067 189131 . - . ID=Phyra71978.3;Parent=Phyra71978;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_66 . CDS 189198 189333 . - 0 ID=Phyra71978;Parent=Phyra71978;rank=2 scaffold_66 . exon 189198 189333 . - . ID=Phyra71978.2;Parent=Phyra71978;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_66 . CDS 189417 189549 . - 0 ID=Phyra71978;Parent=Phyra71978;rank=1 scaffold_66 . exon 189417 189549 . - . ID=Phyra71978.1;Parent=Phyra71978;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 ensembl protein_coding_gene 189774 190780 . + . ID=Phyra81989;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000066;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 189774 190780 . + . ID=Phyra81989;Parent=Phyra81989;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 189774 190107 . + 0 ID=Phyra81989;Parent=Phyra81989;rank=1 scaffold_66 . exon 189774 190107 . + . ID=Phyra81989.1;Parent=Phyra81989;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 190180 190329 . + 0 ID=Phyra81989;Parent=Phyra81989;rank=2 scaffold_66 . exon 190180 190329 . + . ID=Phyra81989.2;Parent=Phyra81989;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 190391 190488 . + 0 ID=Phyra81989;Parent=Phyra81989;rank=3 scaffold_66 . exon 190391 190488 . + . ID=Phyra81989.3;Parent=Phyra81989;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 . CDS 190565 190780 . + 0 ID=Phyra81989;Parent=Phyra81989;rank=4 scaffold_66 . exon 190565 190780 . + . ID=Phyra81989.4;Parent=Phyra81989;constitutive=1;rank=4 scaffold_66 . exon 185037 185613 . + . ID=Phyra96182.2;Parent=Phyra96182;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_66 . exon 185770 186083 . + . ID=Phyra96182.3;Parent=Phyra96182;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 . exon 186463 186720 . + . ID=Phyra96182.4;Parent=Phyra96182;constitutive=1;rank=4 scaffold_66 . exon 186794 187405 . + . ID=Phyra96182.5;Parent=Phyra96182;constitutive=1;rank=5 scaffold_66 . biological_region 196926 196928 0.999 - . logic_name=eponine scaffold_66 . biological_region 197581 197587 0.999 - . logic_name=eponine scaffold_66 . biological_region 198022 198022 0.999 + . logic_name=eponine scaffold_66 . repeat_region 201605 201612 . ? . description=dust scaffold_66 . repeat_region 202069 202086 . ? . description=dust scaffold_66 ensembl protein_coding_gene 197411 198997 . + . ID=Phyra71979;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_66000010;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 197411 198997 . + . ID=Phyra71979;Parent=Phyra71979;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 197411 198997 . + 0 ID=Phyra71979;Parent=Phyra71979;rank=1 scaffold_66 . exon 197411 198997 . + . ID=Phyra71979.1;Parent=Phyra71979;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 201695 202574 . + . ID=Phyra71980;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_66000011;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 201695 202574 . + . ID=Phyra71980;Parent=Phyra71980;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 201695 201750 . + 0 ID=Phyra71980;Parent=Phyra71980;rank=1 scaffold_66 . exon 201695 201750 . + . ID=Phyra71980.1;Parent=Phyra71980;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . CDS 201817 201889 . + 0 ID=Phyra71980;Parent=Phyra71980;rank=2 scaffold_66 . exon 201817 201889 . + . ID=Phyra71980.2;Parent=Phyra71980;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 201964 202029 . + 0 ID=Phyra71980;Parent=Phyra71980;rank=3 scaffold_66 . exon 201964 202029 . + . ID=Phyra71980.3;Parent=Phyra71980;constitutive=1;rank=3 scaffold_66 . CDS 202111 202428 . + 0 ID=Phyra71980;Parent=Phyra71980;rank=4 scaffold_66 . exon 202111 202428 . + . ID=Phyra71980.4;Parent=Phyra71980;constitutive=1;rank=4 scaffold_66 . CDS 202503 202574 . + 0 ID=Phyra71980;Parent=Phyra71980;rank=5 scaffold_66 . exon 202503 202574 . + . ID=Phyra71980.5;Parent=Phyra71980;constitutive=1;rank=5 scaffold_66 ensembl protein_coding_gene 196152 197253 . + . ID=Phyra81990;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000067;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 196152 197253 . + . ID=Phyra81990;Parent=Phyra81990;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 196152 196180 . + 0 ID=Phyra81990;Parent=Phyra81990;rank=1 scaffold_66 . exon 196152 196180 . + . ID=Phyra81990.1;Parent=Phyra81990;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . CDS 196200 196302 . + 0 ID=Phyra81990;Parent=Phyra81990;rank=2 scaffold_66 . exon 196200 196302 . + . ID=Phyra81990.2;Parent=Phyra81990;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 196368 196447 . + 0 ID=Phyra81990;Parent=Phyra81990;rank=3 scaffold_66 . exon 196368 196447 . + . ID=Phyra81990.3;Parent=Phyra81990;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_66 . CDS 196482 197253 . + 0 ID=Phyra81990;Parent=Phyra81990;rank=4 scaffold_66 . exon 196482 197253 . + . ID=Phyra81990.4;Parent=Phyra81990;constitutive=1;ensembl_phase=2;rank=4 scaffold_66 ensembl protein_coding_gene 209203 210581 . + . ID=Phyra52110;biotype=protein_coding;external_name=gwEuk.66.16.1;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 209203 210581 . + . ID=Phyra52110;Parent=Phyra52110;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 209203 209328 . + 0 ID=Phyra52110;Parent=Phyra52110;rank=1 scaffold_66 . exon 209203 209328 . + . ID=Phyra52110.1;Parent=Phyra52110;constitutive=1;rank=1 scaffold_66 . CDS 209408 209555 . + 0 ID=Phyra52110;Parent=Phyra52110;rank=2 scaffold_66 . exon 209408 209555 . + . ID=Phyra52110.2;Parent=Phyra52110;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_66 . CDS 209640 209676 . + 0 ID=Phyra52110;Parent=Phyra52110;rank=3 scaffold_66 . exon 209640 209676 . + . ID=Phyra52110.3;Parent=Phyra52110;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_66 . CDS 209741 209900 . + 0 ID=Phyra52110;Parent=Phyra52110;rank=4 scaffold_66 . exon 209741 209900 . + . ID=Phyra52110.4;Parent=Phyra52110;constitutive=1;ensembl_phase=2;rank=4 scaffold_66 . CDS 209958 210398 . + 0 ID=Phyra52110;Parent=Phyra52110;rank=5 scaffold_66 . exon 209958 210398 . + . ID=Phyra52110.5;Parent=Phyra52110;constitutive=1;rank=5 scaffold_66 . CDS 210486 210581 . + 0 ID=Phyra52110;Parent=Phyra52110;rank=6 scaffold_66 . exon 210486 210581 . + . ID=Phyra52110.6;Parent=Phyra52110;constitutive=1;rank=6 scaffold_66 ensembl protein_coding_gene 212975 214617 . - . ID=Phyra52114;biotype=protein_coding;external_name=gwEuk.66.20.1;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 212975 214617 . - . ID=Phyra52114;Parent=Phyra52114;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 212975 213334 . - 0 ID=Phyra52114;Parent=Phyra52114;rank=5 scaffold_66 . exon 212975 213334 . - . ID=Phyra52114.5;Parent=Phyra52114;constitutive=1;rank=5 scaffold_66 . CDS 213432 213601 . - 0 ID=Phyra52114;Parent=Phyra52114;rank=4 scaffold_66 . exon 213432 213601 . - . ID=Phyra52114.4;Parent=Phyra52114;constitutive=1;ensembl_phase=1;rank=4 scaffold_66 . CDS 213685 213849 . - 0 ID=Phyra52114;Parent=Phyra52114;rank=3 scaffold_66 . exon 213685 213849 . - . ID=Phyra52114.3;Parent=Phyra52114;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_66 . CDS 213925 214373 . - 0 ID=Phyra52114;Parent=Phyra52114;rank=2 scaffold_66 . exon 213925 214373 . - . ID=Phyra52114.2;Parent=Phyra52114;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 214439 214617 . - 0 ID=Phyra52114;Parent=Phyra52114;rank=1 scaffold_66 ensembl protein_coding_gene 205818 207252 . + . ID=Phyra81993;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000070;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 205818 207252 . + . ID=Phyra81993;Parent=Phyra81993;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 205818 205829 . + 0 ID=Phyra81993;Parent=Phyra81993;rank=1 scaffold_66 . exon 205818 205829 . + . ID=Phyra81993.1;Parent=Phyra81993;constitutive=1;rank=1 scaffold_66 . CDS 205914 205983 . + 0 ID=Phyra81993;Parent=Phyra81993;rank=2 scaffold_66 . exon 205914 205983 . + . ID=Phyra81993.2;Parent=Phyra81993;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_66 . CDS 206164 206230 . + 0 ID=Phyra81993;Parent=Phyra81993;rank=3 scaffold_66 . exon 206164 206230 . + . ID=Phyra81993.3;Parent=Phyra81993;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_66 . CDS 206305 206410 . + 0 ID=Phyra81993;Parent=Phyra81993;rank=4 scaffold_66 . exon 206305 206410 . + . ID=Phyra81993.4;Parent=Phyra81993;constitutive=1;ensembl_phase=2;rank=4 scaffold_66 . CDS 206472 206588 . + 0 ID=Phyra81993;Parent=Phyra81993;rank=5 scaffold_66 . exon 206472 206588 . + . ID=Phyra81993.5;Parent=Phyra81993;constitutive=1;rank=5 scaffold_66 . CDS 206662 207088 . + 0 ID=Phyra81993;Parent=Phyra81993;rank=6 scaffold_66 . exon 206662 207088 . + . ID=Phyra81993.6;Parent=Phyra81993;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_66 . CDS 207179 207252 . + 0 ID=Phyra81993;Parent=Phyra81993;rank=7 scaffold_66 . exon 207179 207252 . + . ID=Phyra81993.7;Parent=Phyra81993;constitutive=1;ensembl_phase=1;rank=7 scaffold_66 ensembl protein_coding_gene 207490 208285 . - . ID=Phyra81994;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000071;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 207490 208285 . - . ID=Phyra81994;Parent=Phyra81994;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 207490 207900 . - 0 ID=Phyra81994;Parent=Phyra81994;rank=2 scaffold_66 . exon 207490 207900 . - . ID=Phyra81994.2;Parent=Phyra81994;constitutive=1;rank=2 scaffold_66 . CDS 207938 208285 . - 0 ID=Phyra81994;Parent=Phyra81994;rank=1 scaffold_66 . exon 207938 208285 . - . ID=Phyra81994.1;Parent=Phyra81994;constitutive=1;rank=1 scaffold_66 . repeat_region 215230 215247 . ? . description=dust scaffold_66 . repeat_region 216562 216569 . ? . description=dust scaffold_66 . biological_region 216896 216901 0.999 - . logic_name=eponine scaffold_66 . biological_region 216896 216902 0.999 + . logic_name=eponine scaffold_66 . repeat_region 218054 218061 . ? . description=dust scaffold_66 . biological_region 219206 219206 0.999 - . logic_name=eponine scaffold_66 . biological_region 220958 220960 0.999 - . logic_name=eponine scaffold_66 . repeat_region 221790 221811 . ? . description=trf scaffold_66 . repeat_region 221790 221811 . ? . description=dust scaffold_66 . exon 214439 214617 . - . ID=Phyra52114.1;Parent=Phyra52114;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 219004 221307 . - . ID=Phyra52118;biotype=protein_coding;external_name=gwEuk.66.24.1;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 219004 221307 . - . ID=Phyra52118;Parent=Phyra52118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 219004 221307 . - 0 ID=Phyra52118;Parent=Phyra52118;rank=1 scaffold_66 . exon 219004 221307 . - . ID=Phyra52118.1;Parent=Phyra52118;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 216810 218833 . + . ID=Phyra81997;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000074;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 216810 218833 . + . ID=Phyra81997;Parent=Phyra81997;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 216810 217253 . + 0 ID=Phyra81997;Parent=Phyra81997;rank=1 scaffold_66 . exon 216810 217253 . + . ID=Phyra81997.1;Parent=Phyra81997;constitutive=1;rank=1 scaffold_66 . CDS 217322 217434 . + 0 ID=Phyra81997;Parent=Phyra81997;rank=2 scaffold_66 . exon 217322 217434 . + . ID=Phyra81997.2;Parent=Phyra81997;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_66 . CDS 217678 218344 . + 0 ID=Phyra81997;Parent=Phyra81997;rank=3 scaffold_66 . exon 217678 218344 . + . ID=Phyra81997.3;Parent=Phyra81997;constitutive=1;ensembl_phase=2;rank=3 scaffold_66 . CDS 218426 218833 . + 0 ID=Phyra81997;Parent=Phyra81997;rank=4 scaffold_66 . exon 218426 218833 . + . ID=Phyra81997.4;Parent=Phyra81997;constitutive=1;rank=4 scaffold_66 ensembl protein_coding_gene 221433 222153 . + . ID=Phyra82000;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000077;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 221433 222153 . + . ID=Phyra82000;Parent=Phyra82000;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 221433 221756 . + 0 ID=Phyra82000;Parent=Phyra82000;rank=1 scaffold_66 . exon 221433 221756 . + . ID=Phyra82000.1;Parent=Phyra82000;constitutive=1;rank=1 scaffold_66 . CDS 221838 221909 . + 0 ID=Phyra82000;Parent=Phyra82000;rank=2 scaffold_66 . exon 221838 221909 . + . ID=Phyra82000.2;Parent=Phyra82000;constitutive=1;rank=2 scaffold_66 . CDS 221986 222153 . + 0 ID=Phyra82000;Parent=Phyra82000;rank=3 scaffold_66 . exon 221986 222153 . + . ID=Phyra82000.3;Parent=Phyra82000;constitutive=1;rank=3 scaffold_66 ensembl protein_coding_gene 224710 225976 . - . ID=Phyra82001;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000078;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 224710 225976 . - . ID=Phyra82001;Parent=Phyra82001;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 224710 225507 . - 0 ID=Phyra82001;Parent=Phyra82001;rank=2 scaffold_66 . exon 224710 225507 . - . ID=Phyra82001.2;Parent=Phyra82001;constitutive=1;rank=2 scaffold_66 . CDS 225563 225976 . - 0 ID=Phyra82001;Parent=Phyra82001;rank=1 scaffold_66 . exon 225563 225976 . - . ID=Phyra82001.1;Parent=Phyra82001;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 226898 229573 . + . ID=Phyra82002;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000079;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 226898 229573 . + . ID=Phyra82002;Parent=Phyra82002;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 226898 229573 . + 0 ID=Phyra82002;Parent=Phyra82002;rank=1 scaffold_66 . exon 226898 229573 . + . ID=Phyra82002.1;Parent=Phyra82002;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 229843 231315 . + . ID=Phyra82003;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000080;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 229843 231315 . + . ID=Phyra82003;Parent=Phyra82003;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 229843 231315 . + 0 ID=Phyra82003;Parent=Phyra82003;rank=1 scaffold_66 . exon 229843 231315 . + . ID=Phyra82003.1;Parent=Phyra82003;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 231567 233660 . + . ID=Phyra82004;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000081;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 231567 233660 . + . ID=Phyra82004;Parent=Phyra82004;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 231567 231609 . + 0 ID=Phyra82004;Parent=Phyra82004;rank=1 scaffold_66 . exon 231567 231609 . + . ID=Phyra82004.1;Parent=Phyra82004;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 231678 233573 . + 0 ID=Phyra82004;Parent=Phyra82004;rank=2 scaffold_66 . exon 231678 233573 . + . ID=Phyra82004.2;Parent=Phyra82004;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 233614 233660 . + 0 ID=Phyra82004;Parent=Phyra82004;rank=3 scaffold_66 . exon 233614 233660 . + . ID=Phyra82004.3;Parent=Phyra82004;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 . biological_region 237515 237517 0.999 - . logic_name=eponine scaffold_66 . biological_region 237616 237620 0.999 - . logic_name=eponine scaffold_66 . biological_region 238103 238105 0.999 + . logic_name=eponine scaffold_66 . biological_region 238173 238178 0.999 - . logic_name=eponine scaffold_66 . biological_region 238190 238190 0.999 - . logic_name=eponine scaffold_66 . repeat_region 239601 239640 . ? . description=trf scaffold_66 . biological_region 241897 241899 0.999 + . logic_name=eponine scaffold_66 . repeat_region 243311 243378 . ? . description=dust scaffold_66 . repeat_region 243329 243391 . ? . description=trf scaffold_66 . repeat_region 243330 243378 . ? . description=trf scaffold_66 . repeat_region 243330 243378 . ? . description=trf scaffold_66 ensembl protein_coding_gene 240507 240986 . - . ID=Phyra71983;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_66000014;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 240507 240986 . - . ID=Phyra71983;Parent=Phyra71983;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 240507 240607 . - 0 ID=Phyra71983;Parent=Phyra71983;rank=3 scaffold_66 . exon 240507 240607 . - . ID=Phyra71983.3;Parent=Phyra71983;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 . CDS 240681 240800 . - 0 ID=Phyra71983;Parent=Phyra71983;rank=2 scaffold_66 . exon 240681 240800 . - . ID=Phyra71983.2;Parent=Phyra71983;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 240872 240986 . - 0 ID=Phyra71983;Parent=Phyra71983;rank=1 scaffold_66 . exon 240872 240986 . - . ID=Phyra71983.1;Parent=Phyra71983;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 ensembl protein_coding_gene 239126 240181 . + . ID=Phyra82008;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000085;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 239126 240181 . + . ID=Phyra82008;Parent=Phyra82008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 239126 240181 . + 0 ID=Phyra82008;Parent=Phyra82008;rank=1 scaffold_66 . exon 239126 240181 . + . ID=Phyra82008.1;Parent=Phyra82008;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 241667 245102 . - . ID=Phyra82010;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000087;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 241667 245102 . - . ID=Phyra82010;Parent=Phyra82010;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 241667 244138 . - 0 ID=Phyra82010;Parent=Phyra82010;rank=3 scaffold_66 . exon 241667 244138 . - . ID=Phyra82010.3;Parent=Phyra82010;constitutive=1;rank=3 scaffold_66 . CDS 244204 244293 . - 0 ID=Phyra82010;Parent=Phyra82010;rank=2 scaffold_66 . CDS 244368 245102 . - 0 ID=Phyra82010;Parent=Phyra82010;rank=1 scaffold_66 ensembl protein_coding_gene 233884 237764 . - . ID=Phyra96190;biotype=protein_coding;external_name=C_scaffold_66000039;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 233884 237764 . - . ID=Phyra96190;Parent=Phyra96190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 233884 234466 . - 0 ID=Phyra96190;Parent=Phyra96190;rank=13 scaffold_66 . exon 233884 234466 . - . ID=Phyra96190.13;Parent=Phyra96190;constitutive=1;ensembl_phase=2;rank=13 scaffold_66 . CDS 234538 234751 . - 0 ID=Phyra96190;Parent=Phyra96190;rank=12 scaffold_66 . exon 234538 234751 . - . ID=Phyra96190.12;Parent=Phyra96190;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_66 . CDS 234913 235072 . - 0 ID=Phyra96190;Parent=Phyra96190;rank=11 scaffold_66 . exon 234913 235072 . - . ID=Phyra96190.11;Parent=Phyra96190;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_66 . CDS 235137 235241 . - 0 ID=Phyra96190;Parent=Phyra96190;rank=10 scaffold_66 . exon 235137 235241 . - . ID=Phyra96190.10;Parent=Phyra96190;constitutive=1;rank=10 scaffold_66 . CDS 235314 235478 . - 0 ID=Phyra96190;Parent=Phyra96190;rank=9 scaffold_66 . exon 235314 235478 . - . ID=Phyra96190.9;Parent=Phyra96190;constitutive=1;rank=9 scaffold_66 . CDS 235552 235776 . - 0 ID=Phyra96190;Parent=Phyra96190;rank=8 scaffold_66 . exon 235552 235776 . - . ID=Phyra96190.8;Parent=Phyra96190;constitutive=1;rank=8 scaffold_66 . CDS 236119 236632 . - 0 ID=Phyra96190;Parent=Phyra96190;rank=7 scaffold_66 . exon 236119 236632 . - . ID=Phyra96190.7;Parent=Phyra96190;constitutive=1;ensembl_phase=2;rank=7 scaffold_66 . CDS 236718 236819 . - 0 ID=Phyra96190;Parent=Phyra96190;rank=6 scaffold_66 . exon 236718 236819 . - . ID=Phyra96190.6;Parent=Phyra96190;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_66 . CDS 236898 236938 . - 0 ID=Phyra96190;Parent=Phyra96190;rank=5 scaffold_66 . exon 236898 236938 . - . ID=Phyra96190.5;Parent=Phyra96190;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_66 . CDS 237003 237091 . - 0 ID=Phyra96190;Parent=Phyra96190;rank=4 scaffold_66 . exon 237003 237091 . - . ID=Phyra96190.4;Parent=Phyra96190;constitutive=1;ensembl_phase=1;rank=4 scaffold_66 . CDS 237156 237237 . - 0 ID=Phyra96190;Parent=Phyra96190;rank=3 scaffold_66 . exon 237156 237237 . - . ID=Phyra96190.3;Parent=Phyra96190;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_66 . CDS 237300 237421 . - 0 ID=Phyra96190;Parent=Phyra96190;rank=2 scaffold_66 . exon 237300 237421 . - . ID=Phyra96190.2;Parent=Phyra96190;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 237482 237764 . - 0 ID=Phyra96190;Parent=Phyra96190;rank=1 scaffold_66 . exon 237482 237764 . - . ID=Phyra96190.1;Parent=Phyra96190;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . exon 244204 244293 . - . ID=Phyra82010.2;Parent=Phyra82010;constitutive=1;rank=2 scaffold_66 . exon 244368 245102 . - . ID=Phyra82010.1;Parent=Phyra82010;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 245251 245825 . + . ID=Phyra82011;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000088;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 245251 245825 . + . ID=Phyra82011;Parent=Phyra82011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 245251 245279 . + 0 ID=Phyra82011;Parent=Phyra82011;rank=1 scaffold_66 . exon 245251 245279 . + . ID=Phyra82011.1;Parent=Phyra82011;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . CDS 245390 245825 . + 0 ID=Phyra82011;Parent=Phyra82011;rank=2 scaffold_66 . exon 245390 245825 . + . ID=Phyra82011.2;Parent=Phyra82011;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 ensembl protein_coding_gene 248491 248992 . - . ID=Phyra82012;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000089;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 248491 248992 . - . ID=Phyra82012;Parent=Phyra82012;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 248491 248799 . - 0 ID=Phyra82012;Parent=Phyra82012;rank=2 scaffold_66 . exon 248491 248799 . - . ID=Phyra82012.2;Parent=Phyra82012;constitutive=1;rank=2 scaffold_66 . CDS 248888 248992 . - 0 ID=Phyra82012;Parent=Phyra82012;rank=1 scaffold_66 . exon 248888 248992 . - . ID=Phyra82012.1;Parent=Phyra82012;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 249866 250483 . + . ID=Phyra82013;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000090;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 249866 250483 . + . ID=Phyra82013;Parent=Phyra82013;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 249866 250483 . + 0 ID=Phyra82013;Parent=Phyra82013;rank=1 scaffold_66 . exon 249866 250483 . + . ID=Phyra82013.1;Parent=Phyra82013;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 251097 254864 . - . ID=Phyra82014;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000091;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 251097 254864 . - . ID=Phyra82014;Parent=Phyra82014;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 251097 254864 . - 0 ID=Phyra82014;Parent=Phyra82014;rank=1 scaffold_66 . exon 251097 254864 . - . ID=Phyra82014.1;Parent=Phyra82014;constitutive=1;rank=1 scaffold_66 . repeat_region 255289 255296 . ? . description=dust scaffold_66 . biological_region 256600 256606 0.999 + . logic_name=eponine scaffold_66 ensembl protein_coding_gene 256012 257514 . + . ID=Phyra71984;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_66000015;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 256012 257514 . + . ID=Phyra71984;Parent=Phyra71984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 256012 257514 . + 0 ID=Phyra71984;Parent=Phyra71984;rank=1 scaffold_66 . exon 256012 257514 . + . ID=Phyra71984.1;Parent=Phyra71984;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 262725 263248 . + . ID=Phyra82016;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000093;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 262725 263248 . + . ID=Phyra82016;Parent=Phyra82016;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 262725 262784 . + 0 ID=Phyra82016;Parent=Phyra82016;rank=1 scaffold_66 . exon 262725 262784 . + . ID=Phyra82016.1;Parent=Phyra82016;constitutive=1;rank=1 scaffold_66 . CDS 262850 263098 . + 0 ID=Phyra82016;Parent=Phyra82016;rank=2 scaffold_66 . CDS 263165 263248 . + 0 ID=Phyra82016;Parent=Phyra82016;rank=3 scaffold_66 ensembl protein_coding_gene 270404 272537 . + . ID=Phyra52148;biotype=protein_coding;external_name=gwEuk.66.54.1;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 270404 272537 . + . ID=Phyra52148;Parent=Phyra52148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 270404 271414 . + 0 ID=Phyra52148;Parent=Phyra52148;rank=1 scaffold_66 . exon 270404 271414 . + . ID=Phyra52148.1;Parent=Phyra52148;constitutive=1;rank=1 scaffold_66 . CDS 271487 271690 . + 0 ID=Phyra52148;Parent=Phyra52148;rank=2 scaffold_66 . exon 271487 271690 . + . ID=Phyra52148.2;Parent=Phyra52148;constitutive=1;rank=2 scaffold_66 . CDS 271769 272074 . + 0 ID=Phyra52148;Parent=Phyra52148;rank=3 scaffold_66 . exon 271769 272074 . + . ID=Phyra52148.3;Parent=Phyra52148;constitutive=1;rank=3 scaffold_66 . CDS 272141 272224 . + 0 ID=Phyra52148;Parent=Phyra52148;rank=4 scaffold_66 . exon 272141 272224 . + . ID=Phyra52148.4;Parent=Phyra52148;constitutive=1;rank=4 scaffold_66 . CDS 272301 272537 . + 0 ID=Phyra52148;Parent=Phyra52148;rank=5 scaffold_66 . exon 272301 272537 . + . ID=Phyra52148.5;Parent=Phyra52148;constitutive=1;rank=5 scaffold_66 ensembl protein_coding_gene 268100 269635 . - . ID=Phyra71985;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_66000016;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 268100 269635 . - . ID=Phyra71985;Parent=Phyra71985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 268100 269560 . - 0 ID=Phyra71985;Parent=Phyra71985;rank=2 scaffold_66 . exon 268100 269560 . - . ID=Phyra71985.2;Parent=Phyra71985;constitutive=1;rank=2 scaffold_66 . CDS 269609 269635 . - 0 ID=Phyra71985;Parent=Phyra71985;rank=1 scaffold_66 . exon 269609 269635 . - . ID=Phyra71985.1;Parent=Phyra71985;constitutive=1;rank=1 scaffold_66 . exon 262850 263098 . + . ID=Phyra82016.2;Parent=Phyra82016;constitutive=1;rank=2 scaffold_66 . exon 263165 263248 . + . ID=Phyra82016.3;Parent=Phyra82016;constitutive=1;rank=3 scaffold_66 ensembl protein_coding_gene 263362 263765 . + . ID=Phyra82017;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000094;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 263362 263765 . + . ID=Phyra82017;Parent=Phyra82017;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 263362 263496 . + 0 ID=Phyra82017;Parent=Phyra82017;rank=1 scaffold_66 . exon 263362 263496 . + . ID=Phyra82017.1;Parent=Phyra82017;constitutive=1;rank=1 scaffold_66 . CDS 263568 263765 . + 0 ID=Phyra82017;Parent=Phyra82017;rank=2 scaffold_66 . exon 263568 263765 . + . ID=Phyra82017.2;Parent=Phyra82017;constitutive=1;rank=2 scaffold_66 . biological_region 279187 279187 0.999 + . logic_name=eponine scaffold_66 . biological_region 279204 279210 0.999 + . logic_name=eponine scaffold_66 ensembl protein_coding_gene 274681 275805 . - . ID=Phyra71986;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_66000017;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 274681 275805 . - . ID=Phyra71986;Parent=Phyra71986;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 274681 275805 . - 0 ID=Phyra71986;Parent=Phyra71986;rank=1 scaffold_66 . exon 274681 275805 . - . ID=Phyra71986.1;Parent=Phyra71986;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 278029 280059 . - . ID=Phyra82021;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000098;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 278029 280059 . - . ID=Phyra82021;Parent=Phyra82021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 278029 280059 . - 0 ID=Phyra82021;Parent=Phyra82021;rank=1 scaffold_66 . exon 278029 280059 . - . ID=Phyra82021.1;Parent=Phyra82021;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 280572 282639 . - . ID=Phyra82022;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000099;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 280572 282639 . - . ID=Phyra82022;Parent=Phyra82022;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 280572 281963 . - 0 ID=Phyra82022;Parent=Phyra82022;rank=4 scaffold_66 . exon 280572 281963 . - . ID=Phyra82022.4;Parent=Phyra82022;constitutive=1;rank=4 scaffold_66 . CDS 282135 282183 . - 0 ID=Phyra82022;Parent=Phyra82022;rank=3 scaffold_66 . exon 282135 282183 . - . ID=Phyra82022.3;Parent=Phyra82022;constitutive=1;ensembl_phase=2;rank=3 scaffold_66 . CDS 282377 282418 . - 0 ID=Phyra82022;Parent=Phyra82022;rank=2 scaffold_66 . CDS 282503 282639 . - 0 ID=Phyra82022;Parent=Phyra82022;rank=1 scaffold_66 ensembl protein_coding_gene 272635 273985 . + . ID=Phyra96192;biotype=protein_coding;external_name=C_scaffold_66000041;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 272635 273985 . + . ID=Phyra96192;Parent=Phyra96192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 272635 273044 . + 0 ID=Phyra96192;Parent=Phyra96192;rank=1 scaffold_66 . exon 272635 273044 . + . ID=Phyra96192.1;Parent=Phyra96192;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . CDS 273109 273209 . + 0 ID=Phyra96192;Parent=Phyra96192;rank=2 scaffold_66 . exon 273109 273209 . + . ID=Phyra96192.2;Parent=Phyra96192;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 273373 273467 . + 0 ID=Phyra96192;Parent=Phyra96192;rank=3 scaffold_66 . exon 273373 273467 . + . ID=Phyra96192.3;Parent=Phyra96192;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 . CDS 273536 273719 . + 0 ID=Phyra96192;Parent=Phyra96192;rank=4 scaffold_66 . exon 273536 273719 . + . ID=Phyra96192.4;Parent=Phyra96192;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_66 . CDS 273849 273985 . + 0 ID=Phyra96192;Parent=Phyra96192;rank=5 scaffold_66 . exon 273849 273985 . + . ID=Phyra96192.5;Parent=Phyra96192;constitutive=1;ensembl_phase=1;rank=5 scaffold_66 . repeat_region 282454 282474 . ? . description=dust scaffold_66 . exon 282377 282418 . - . ID=Phyra82022.2;Parent=Phyra82022;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_66 . exon 282503 282639 . - . ID=Phyra82022.1;Parent=Phyra82022;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 284611 288292 . - . ID=Phyra82023;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_66000100;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 284611 288292 . - . ID=Phyra82023;Parent=Phyra82023;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 284611 285156 . - 0 ID=Phyra82023;Parent=Phyra82023;rank=9 scaffold_66 . exon 284611 285156 . - . ID=Phyra82023.9;Parent=Phyra82023;constitutive=1;rank=9 scaffold_66 . CDS 285232 285474 . - 0 ID=Phyra82023;Parent=Phyra82023;rank=8 scaffold_66 . exon 285232 285474 . - . ID=Phyra82023.8;Parent=Phyra82023;constitutive=1;rank=8 scaffold_66 . CDS 285499 286586 . - 0 ID=Phyra82023;Parent=Phyra82023;rank=7 scaffold_66 . exon 285499 286586 . - . ID=Phyra82023.7;Parent=Phyra82023;constitutive=1;ensembl_phase=1;rank=7 scaffold_66 . CDS 286837 287264 . - 0 ID=Phyra82023;Parent=Phyra82023;rank=6 scaffold_66 . exon 286837 287264 . - . ID=Phyra82023.6;Parent=Phyra82023;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_66 . CDS 287340 287491 . - 0 ID=Phyra82023;Parent=Phyra82023;rank=5 scaffold_66 . exon 287340 287491 . - . ID=Phyra82023.5;Parent=Phyra82023;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_66 . CDS 287592 287736 . - 0 ID=Phyra82023;Parent=Phyra82023;rank=4 scaffold_66 . exon 287592 287736 . - . ID=Phyra82023.4;Parent=Phyra82023;constitutive=1;ensembl_phase=2;rank=4 scaffold_66 . CDS 287802 287899 . - 0 ID=Phyra82023;Parent=Phyra82023;rank=3 scaffold_66 . exon 287802 287899 . - . ID=Phyra82023.3;Parent=Phyra82023;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_66 . CDS 287982 288208 . - 0 ID=Phyra82023;Parent=Phyra82023;rank=2 scaffold_66 . exon 287982 288208 . - . ID=Phyra82023.2;Parent=Phyra82023;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 288271 288292 . - 0 ID=Phyra82023;Parent=Phyra82023;rank=1 scaffold_66 . exon 288271 288292 . - . ID=Phyra82023.1;Parent=Phyra82023;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 ensembl protein_coding_gene 283849 284424 . + . ID=Phyra96194;biotype=protein_coding;external_name=C_scaffold_66000043;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 283849 284424 . + . ID=Phyra96194;Parent=Phyra96194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 283849 283894 . + 0 ID=Phyra96194;Parent=Phyra96194;rank=1 scaffold_66 . exon 283849 283894 . + . ID=Phyra96194.1;Parent=Phyra96194;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 283970 284098 . + 0 ID=Phyra96194;Parent=Phyra96194;rank=2 scaffold_66 . exon 283970 284098 . + . ID=Phyra96194.2;Parent=Phyra96194;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 284168 284424 . + 0 ID=Phyra96194;Parent=Phyra96194;rank=3 scaffold_66 . exon 284168 284424 . + . ID=Phyra96194.3;Parent=Phyra96194;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 ensembl protein_coding_gene 289381 291045 . + . ID=Phyra96197;biotype=protein_coding;external_name=C_scaffold_66000046;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 289381 291045 . + . ID=Phyra96197;Parent=Phyra96197;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 289381 289620 . + 0 ID=Phyra96197;Parent=Phyra96197;rank=1 scaffold_66 . exon 289381 289620 . + . ID=Phyra96197.1;Parent=Phyra96197;constitutive=1;rank=1 scaffold_66 . CDS 289651 291045 . + 0 ID=Phyra96197;Parent=Phyra96197;rank=2 scaffold_66 . exon 289651 291045 . + . ID=Phyra96197.2;Parent=Phyra96197;constitutive=1;rank=2 scaffold_66 ensembl protein_coding_gene 291466 293960 . - . ID=Phyra96198;biotype=protein_coding;external_name=C_scaffold_66000047;logic_name=jgi_phyra1 scaffold_66 ensembl transcript 291466 293960 . - . ID=Phyra96198;Parent=Phyra96198;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_66 . CDS 291466 291470 . - 0 ID=Phyra96198;Parent=Phyra96198;rank=11 scaffold_66 . exon 291466 291470 . - . ID=Phyra96198.11;Parent=Phyra96198;constitutive=1;ensembl_phase=1;rank=11 scaffold_66 . CDS 291510 291630 . - 0 ID=Phyra96198;Parent=Phyra96198;rank=10 scaffold_66 . exon 291510 291630 . - . ID=Phyra96198.10;Parent=Phyra96198;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_66 . CDS 291696 291784 . - 0 ID=Phyra96198;Parent=Phyra96198;rank=9 scaffold_66 . exon 291696 291784 . - . ID=Phyra96198.9;Parent=Phyra96198;constitutive=1;ensembl_phase=1;rank=9 scaffold_66 . CDS 291880 292007 . - 0 ID=Phyra96198;Parent=Phyra96198;rank=8 scaffold_66 . exon 291880 292007 . - . ID=Phyra96198.8;Parent=Phyra96198;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_66 . CDS 292101 292112 . - 0 ID=Phyra96198;Parent=Phyra96198;rank=7 scaffold_66 . CDS 292223 292277 . - 0 ID=Phyra96198;Parent=Phyra96198;rank=6 scaffold_66 . CDS 292353 292793 . - 0 ID=Phyra96198;Parent=Phyra96198;rank=5 scaffold_66 . CDS 292840 292859 . - 0 ID=Phyra96198;Parent=Phyra96198;rank=4 scaffold_66 . CDS 292910 293377 . - 0 ID=Phyra96198;Parent=Phyra96198;rank=3 scaffold_66 . CDS 293477 293546 . - 0 ID=Phyra96198;Parent=Phyra96198;rank=2 scaffold_66 . CDS 293618 293960 . - 0 ID=Phyra96198;Parent=Phyra96198;rank=1 scaffold_66 . biological_region 298067 298069 0.999 + . logic_name=eponine scaffold_66 . repeat_region 298758 298826 . ? . description=trf scaffold_66 . exon 292101 292112 . - . ID=Phyra96198.7;Parent=Phyra96198;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_66 . exon 292223 292277 . - . ID=Phyra96198.6;Parent=Phyra96198;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_66 . exon 292353 292793 . - . ID=Phyra96198.5;Parent=Phyra96198;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_66 . exon 292840 292859 . - . ID=Phyra96198.4;Parent=Phyra96198;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_66 . exon 292910 293377 . - . ID=Phyra96198.3;Parent=Phyra96198;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_66 . exon 293477 293546 . - . ID=Phyra96198.2;Parent=Phyra96198;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_66 . exon 293618 293960 . - . ID=Phyra96198.1;Parent=Phyra96198;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_64 1 308042 scaffold_64 . biological_region 774 778 0.999 + . logic_name=eponine scaffold_64 . repeat_region 2484 2491 . ? . description=dust scaffold_64 . biological_region 3416 3417 0.999 + . logic_name=eponine scaffold_64 . biological_region 3468 3473 0.999 - . logic_name=eponine scaffold_64 . biological_region 3834 3839 0.999 + . logic_name=eponine scaffold_64 . biological_region 3920 3922 0.999 - . logic_name=eponine scaffold_64 . repeat_region 7198 7247 . ? . description=dust scaffold_64 . repeat_region 8824 8833 . ? . description=dust scaffold_64 ensembl protein_coding_gene 79 1252 . - . ID=Phyra81799;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000001;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 79 1252 . - . ID=Phyra81799;Parent=Phyra81799;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 79 276 . - 0 ID=Phyra81799;Parent=Phyra81799;rank=3 scaffold_64 . exon 79 276 . - . ID=Phyra81799.3;Parent=Phyra81799;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_64 . CDS 301 318 . - 0 ID=Phyra81799;Parent=Phyra81799;rank=2 scaffold_64 . exon 301 318 . - . ID=Phyra81799.2;Parent=Phyra81799;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_64 . CDS 373 1252 . - 0 ID=Phyra81799;Parent=Phyra81799;rank=1 scaffold_64 . exon 373 1252 . - . ID=Phyra81799.1;Parent=Phyra81799;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 ensembl protein_coding_gene 4247 5845 . - . ID=Phyra81800;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000002;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 4247 5845 . - . ID=Phyra81800;Parent=Phyra81800;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 4247 5845 . - 0 ID=Phyra81800;Parent=Phyra81800;rank=1 scaffold_64 . exon 4247 5845 . - . ID=Phyra81800.1;Parent=Phyra81800;constitutive=1;rank=1 scaffold_64 . repeat_region 14499 14601 . - . description=GypsyPi-1c_LTR scaffold_64 . repeat_region 16647 26230 . ? . description=dust scaffold_64 . repeat_region 27070 28117 . ? . description=dust scaffold_64 . repeat_region 28266 28277 . ? . description=dust scaffold_64 ensembl protein_coding_gene 28553 29587 . - . ID=Phyra81801;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000003;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 28553 29587 . - . ID=Phyra81801;Parent=Phyra81801;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 28553 29587 . - 0 ID=Phyra81801;Parent=Phyra81801;rank=1 scaffold_64 . exon 28553 29587 . - . ID=Phyra81801.1;Parent=Phyra81801;constitutive=1;rank=1 scaffold_64 . biological_region 32622 32628 0.999 - . logic_name=eponine scaffold_64 . repeat_region 32907 32945 . ? . description=trf scaffold_64 . repeat_region 32941 32974 . ? . description=trf scaffold_64 . biological_region 35331 35333 0.999 + . logic_name=eponine scaffold_64 . biological_region 35414 35419 0.999 - . logic_name=eponine scaffold_64 . biological_region 37653 37653 0.999 + . logic_name=eponine scaffold_64 ensembl protein_coding_gene 31046 32650 . - . ID=Phyra81802;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000004;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 31046 32650 . - . ID=Phyra81802;Parent=Phyra81802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 31046 32650 . - 0 ID=Phyra81802;Parent=Phyra81802;rank=1 scaffold_64 . exon 31046 32650 . - . ID=Phyra81802.1;Parent=Phyra81802;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 33407 35005 . + . ID=Phyra81803;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000005;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 33407 35005 . + . ID=Phyra81803;Parent=Phyra81803;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 33407 35005 . + 0 ID=Phyra81803;Parent=Phyra81803;rank=1 scaffold_64 . exon 33407 35005 . + . ID=Phyra81803.1;Parent=Phyra81803;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 37668 38339 . + . ID=Phyra81804;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000006;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 37668 38339 . + . ID=Phyra81804;Parent=Phyra81804;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 37668 38339 . + 0 ID=Phyra81804;Parent=Phyra81804;rank=1 scaffold_64 . exon 37668 38339 . + . ID=Phyra81804.1;Parent=Phyra81804;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 38401 39981 . - . ID=Phyra81805;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000007;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 38401 39981 . - . ID=Phyra81805;Parent=Phyra81805;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 38401 39981 . - 0 ID=Phyra81805;Parent=Phyra81805;rank=1 scaffold_64 . exon 38401 39981 . - . ID=Phyra81805.1;Parent=Phyra81805;constitutive=1;rank=1 scaffold_64 . repeat_region 43933 43975 . ? . description=dust scaffold_64 ensembl protein_coding_gene 41947 43895 . - . ID=Phyra81806;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000008;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 41947 43895 . - . ID=Phyra81806;Parent=Phyra81806;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 41947 41979 . - 0 ID=Phyra81806;Parent=Phyra81806;rank=2 scaffold_64 . exon 41947 41979 . - . ID=Phyra81806.2;Parent=Phyra81806;constitutive=1;rank=2 scaffold_64 . CDS 42114 43895 . - 0 ID=Phyra81806;Parent=Phyra81806;rank=1 scaffold_64 . exon 42114 43895 . - . ID=Phyra81806.1;Parent=Phyra81806;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 45407 46522 . + . ID=Phyra81807;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000009;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 45407 46522 . + . ID=Phyra81807;Parent=Phyra81807;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 45407 46522 . + 0 ID=Phyra81807;Parent=Phyra81807;rank=1 scaffold_64 . exon 45407 46522 . + . ID=Phyra81807.1;Parent=Phyra81807;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 48518 49196 . + . ID=Phyra81809;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000011;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 48518 49196 . + . ID=Phyra81809;Parent=Phyra81809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 48518 48672 . + 0 ID=Phyra81809;Parent=Phyra81809;rank=1 scaffold_64 . exon 48518 48672 . + . ID=Phyra81809.1;Parent=Phyra81809;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 . CDS 48755 49196 . + 0 ID=Phyra81809;Parent=Phyra81809;rank=2 scaffold_64 . exon 48755 49196 . + . ID=Phyra81809.2;Parent=Phyra81809;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 ensembl protein_coding_gene 46686 47963 . - . ID=Phyra96136;biotype=protein_coding;external_name=C_scaffold_64000002;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 46686 47963 . - . ID=Phyra96136;Parent=Phyra96136;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 46686 46919 . - 0 ID=Phyra96136;Parent=Phyra96136;rank=2 scaffold_64 . exon 46686 46919 . - . ID=Phyra96136.2;Parent=Phyra96136;constitutive=1;rank=2 scaffold_64 . CDS 47007 47963 . - 0 ID=Phyra96136;Parent=Phyra96136;rank=1 scaffold_64 . exon 47007 47963 . - . ID=Phyra96136.1;Parent=Phyra96136;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 49335 50028 . - . ID=Phyra96138;biotype=protein_coding;external_name=C_scaffold_64000004;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 49335 50028 . - . ID=Phyra96138;Parent=Phyra96138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 49335 49502 . - 0 ID=Phyra96138;Parent=Phyra96138;rank=4 scaffold_64 . exon 49335 49502 . - . ID=Phyra96138.4;Parent=Phyra96138;constitutive=1;rank=4 scaffold_64 . CDS 49578 49676 . - 0 ID=Phyra96138;Parent=Phyra96138;rank=3 scaffold_64 . exon 49578 49676 . - . ID=Phyra96138.3;Parent=Phyra96138;constitutive=1;rank=3 scaffold_64 . CDS 49746 49844 . - 0 ID=Phyra96138;Parent=Phyra96138;rank=2 scaffold_64 . CDS 49903 50028 . - 0 ID=Phyra96138;Parent=Phyra96138;rank=1 scaffold_64 . repeat_region 52462 52511 . ? . description=trf scaffold_64 . repeat_region 54754 54796 . ? . description=trf scaffold_64 . biological_region 56448 56450 0.999 + . logic_name=eponine scaffold_64 . repeat_region 56534 56585 . ? . description=trf scaffold_64 . repeat_region 56547 57146 . ? . description=trf scaffold_64 . biological_region 56557 56558 0.999 + . logic_name=eponine scaffold_64 . repeat_region 56595 56635 . ? . description=trf scaffold_64 . biological_region 56600 56602 0.999 + . logic_name=eponine scaffold_64 . biological_region 56682 56686 0.999 + . logic_name=eponine scaffold_64 . biological_region 56715 56718 0.999 + . logic_name=eponine scaffold_64 . biological_region 56778 56782 0.999 + . logic_name=eponine scaffold_64 . biological_region 56811 56814 0.999 + . logic_name=eponine scaffold_64 . biological_region 56874 56878 0.999 + . logic_name=eponine scaffold_64 . biological_region 56907 56910 0.999 + . logic_name=eponine scaffold_64 . biological_region 56969 56974 0.999 + . logic_name=eponine scaffold_64 . biological_region 57003 57006 0.999 + . logic_name=eponine scaffold_64 . biological_region 57066 57068 0.999 + . logic_name=eponine scaffold_64 . repeat_region 59087 59937 . ? . description=trf scaffold_64 ensembl protein_coding_gene 50104 53033 . + . ID=Phyra81810;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000012;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 50104 53033 . + . ID=Phyra81810;Parent=Phyra81810;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 50104 52597 . + 0 ID=Phyra81810;Parent=Phyra81810;rank=1 scaffold_64 . exon 50104 52597 . + . ID=Phyra81810.1;Parent=Phyra81810;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 . CDS 52987 53033 . + 0 ID=Phyra81810;Parent=Phyra81810;rank=2 scaffold_64 . exon 52987 53033 . + . ID=Phyra81810.2;Parent=Phyra81810;constitutive=1;ensembl_phase=1;rank=2 scaffold_64 ensembl protein_coding_gene 54415 55294 . + . ID=Phyra81811;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000013;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 54415 55294 . + . ID=Phyra81811;Parent=Phyra81811;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 54415 54664 . + 0 ID=Phyra81811;Parent=Phyra81811;rank=1 scaffold_64 . exon 54415 54664 . + . ID=Phyra81811.1;Parent=Phyra81811;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 . CDS 54722 54929 . + 0 ID=Phyra81811;Parent=Phyra81811;rank=2 scaffold_64 . exon 54722 54929 . + . ID=Phyra81811.2;Parent=Phyra81811;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_64 . CDS 55243 55294 . + 0 ID=Phyra81811;Parent=Phyra81811;rank=3 scaffold_64 . exon 55243 55294 . + . ID=Phyra81811.3;Parent=Phyra81811;constitutive=1;ensembl_phase=2;rank=3 scaffold_64 ensembl protein_coding_gene 56565 57284 . + . ID=Phyra81812;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000014;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 56565 57284 . + . ID=Phyra81812;Parent=Phyra81812;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 56565 57284 . + 0 ID=Phyra81812;Parent=Phyra81812;rank=1 scaffold_64 . exon 56565 57284 . + . ID=Phyra81812.1;Parent=Phyra81812;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 58502 60472 . + . ID=Phyra81813;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000015;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 58502 60472 . + . ID=Phyra81813;Parent=Phyra81813;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 58502 60472 . + 0 ID=Phyra81813;Parent=Phyra81813;rank=1 scaffold_64 . exon 58502 60472 . + . ID=Phyra81813.1;Parent=Phyra81813;constitutive=1;rank=1 scaffold_64 . exon 49746 49844 . - . ID=Phyra96138.2;Parent=Phyra96138;constitutive=1;rank=2 scaffold_64 . exon 49903 50028 . - . ID=Phyra96138.1;Parent=Phyra96138;constitutive=1;rank=1 scaffold_64 . repeat_region 67763 67783 . ? . description=dust scaffold_64 ensembl protein_coding_gene 63002 63745 . - . ID=Phyra71963;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_64000001;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 63002 63745 . - . ID=Phyra71963;Parent=Phyra71963;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 63002 63745 . - 0 ID=Phyra71963;Parent=Phyra71963;rank=1 scaffold_64 . exon 63002 63745 . - . ID=Phyra71963.1;Parent=Phyra71963;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 63852 64934 . - . ID=Phyra71964;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_64000002;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 63852 64934 . - . ID=Phyra71964;Parent=Phyra71964;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 63852 64934 . - 0 ID=Phyra71964;Parent=Phyra71964;rank=1 scaffold_64 . exon 63852 64934 . - . ID=Phyra71964.1;Parent=Phyra71964;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 60600 62748 . + . ID=Phyra81814;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000016;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 60600 62748 . + . ID=Phyra81814;Parent=Phyra81814;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 60600 60719 . + 0 ID=Phyra81814;Parent=Phyra81814;rank=1 scaffold_64 . exon 60600 60719 . + . ID=Phyra81814.1;Parent=Phyra81814;constitutive=1;rank=1 scaffold_64 . CDS 60797 61140 . + 0 ID=Phyra81814;Parent=Phyra81814;rank=2 scaffold_64 . exon 60797 61140 . + . ID=Phyra81814.2;Parent=Phyra81814;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_64 . CDS 61209 61626 . + 0 ID=Phyra81814;Parent=Phyra81814;rank=3 scaffold_64 . exon 61209 61626 . + . ID=Phyra81814.3;Parent=Phyra81814;constitutive=1;ensembl_phase=2;rank=3 scaffold_64 . CDS 61699 62106 . + 0 ID=Phyra81814;Parent=Phyra81814;rank=4 scaffold_64 . exon 61699 62106 . + . ID=Phyra81814.4;Parent=Phyra81814;constitutive=1;rank=4 scaffold_64 . CDS 62177 62269 . + 0 ID=Phyra81814;Parent=Phyra81814;rank=5 scaffold_64 . exon 62177 62269 . + . ID=Phyra81814.5;Parent=Phyra81814;constitutive=1;rank=5 scaffold_64 . CDS 62340 62465 . + 0 ID=Phyra81814;Parent=Phyra81814;rank=6 scaffold_64 . exon 62340 62465 . + . ID=Phyra81814.6;Parent=Phyra81814;constitutive=1;rank=6 scaffold_64 . CDS 62512 62578 . + 0 ID=Phyra81814;Parent=Phyra81814;rank=7 scaffold_64 . exon 62512 62578 . + . ID=Phyra81814.7;Parent=Phyra81814;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_64 . CDS 62687 62748 . + 0 ID=Phyra81814;Parent=Phyra81814;rank=8 scaffold_64 . exon 62687 62748 . + . ID=Phyra81814.8;Parent=Phyra81814;constitutive=1;ensembl_phase=1;rank=8 scaffold_64 ensembl protein_coding_gene 65164 68078 . + . ID=Phyra81817;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000019;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 65164 68078 . + . ID=Phyra81817;Parent=Phyra81817;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 65164 65271 . + 0 ID=Phyra81817;Parent=Phyra81817;rank=1 scaffold_64 . exon 65164 65271 . + . ID=Phyra81817.1;Parent=Phyra81817;constitutive=1;rank=1 scaffold_64 . CDS 65328 65540 . + 0 ID=Phyra81817;Parent=Phyra81817;rank=2 scaffold_64 . exon 65328 65540 . + . ID=Phyra81817.2;Parent=Phyra81817;constitutive=1;rank=2 scaffold_64 . CDS 65616 66011 . + 0 ID=Phyra81817;Parent=Phyra81817;rank=3 scaffold_64 . exon 65616 66011 . + . ID=Phyra81817.3;Parent=Phyra81817;constitutive=1;rank=3 scaffold_64 . CDS 66096 66938 . + 0 ID=Phyra81817;Parent=Phyra81817;rank=4 scaffold_64 . exon 66096 66938 . + . ID=Phyra81817.4;Parent=Phyra81817;constitutive=1;rank=4 scaffold_64 . CDS 67275 67490 . + 0 ID=Phyra81817;Parent=Phyra81817;rank=5 scaffold_64 . exon 67275 67490 . + . ID=Phyra81817.5;Parent=Phyra81817;constitutive=1;rank=5 scaffold_64 . CDS 67519 67639 . + 0 ID=Phyra81817;Parent=Phyra81817;rank=6 scaffold_64 . exon 67519 67639 . + . ID=Phyra81817.6;Parent=Phyra81817;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_64 . CDS 67735 68078 . + 0 ID=Phyra81817;Parent=Phyra81817;rank=7 scaffold_64 . exon 67735 68078 . + . ID=Phyra81817.7;Parent=Phyra81817;constitutive=1;ensembl_phase=1;rank=7 scaffold_64 ensembl protein_coding_gene 68480 69456 . + . ID=Phyra81818;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000020;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 68480 69456 . + . ID=Phyra81818;Parent=Phyra81818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 68480 69090 . + 0 ID=Phyra81818;Parent=Phyra81818;rank=1 scaffold_64 . exon 68480 69090 . + . ID=Phyra81818.1;Parent=Phyra81818;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 . CDS 69156 69456 . + 0 ID=Phyra81818;Parent=Phyra81818;rank=2 scaffold_64 . exon 69156 69456 . + . ID=Phyra81818.2;Parent=Phyra81818;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 . biological_region 72083 72084 0.999 + . logic_name=eponine scaffold_64 ensembl protein_coding_gene 69625 72243 . - . ID=Phyra81819;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000021;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 69625 72243 . - . ID=Phyra81819;Parent=Phyra81819;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 69625 71802 . - 0 ID=Phyra81819;Parent=Phyra81819;rank=2 scaffold_64 . exon 69625 71802 . - . ID=Phyra81819.2;Parent=Phyra81819;constitutive=1;rank=2 scaffold_64 . CDS 71905 72243 . - 0 ID=Phyra81819;Parent=Phyra81819;rank=1 scaffold_64 . exon 71905 72243 . - . ID=Phyra81819.1;Parent=Phyra81819;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 79198 80364 . + . ID=Phyra81820;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000022;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 79198 80364 . + . ID=Phyra81820;Parent=Phyra81820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 79198 80364 . + 0 ID=Phyra81820;Parent=Phyra81820;rank=1 scaffold_64 . exon 79198 80364 . + . ID=Phyra81820.1;Parent=Phyra81820;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 85037 86353 . - . ID=Phyra51992;biotype=protein_coding;external_name=gwEuk.64.60.1;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 85037 86353 . - . ID=Phyra51992;Parent=Phyra51992;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 85037 85210 . - 0 ID=Phyra51992;Parent=Phyra51992;rank=6 scaffold_64 . exon 85037 85210 . - . ID=Phyra51992.6;Parent=Phyra51992;constitutive=1;rank=6 scaffold_64 . CDS 85296 85402 . - 0 ID=Phyra51992;Parent=Phyra51992;rank=5 scaffold_64 . exon 85296 85402 . - . ID=Phyra51992.5;Parent=Phyra51992;constitutive=1;ensembl_phase=1;rank=5 scaffold_64 . CDS 85487 85633 . - 0 ID=Phyra51992;Parent=Phyra51992;rank=4 scaffold_64 . exon 85487 85633 . - . ID=Phyra51992.4;Parent=Phyra51992;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_64 . CDS 85703 85977 . - 0 ID=Phyra51992;Parent=Phyra51992;rank=3 scaffold_64 . exon 85703 85977 . - . ID=Phyra51992.3;Parent=Phyra51992;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_64 . CDS 86053 86180 . - 0 ID=Phyra51992;Parent=Phyra51992;rank=2 scaffold_64 . exon 86053 86180 . - . ID=Phyra51992.2;Parent=Phyra51992;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_64 . CDS 86267 86353 . - 0 ID=Phyra51992;Parent=Phyra51992;rank=1 scaffold_64 . exon 86267 86353 . - . ID=Phyra51992.1;Parent=Phyra51992;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 81563 82769 . + . ID=Phyra81821;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000023;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 81563 82769 . + . ID=Phyra81821;Parent=Phyra81821;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 81563 82087 . + 0 ID=Phyra81821;Parent=Phyra81821;rank=1 scaffold_64 . exon 81563 82087 . + . ID=Phyra81821.1;Parent=Phyra81821;constitutive=1;rank=1 scaffold_64 . CDS 82167 82769 . + 0 ID=Phyra81821;Parent=Phyra81821;rank=2 scaffold_64 . exon 82167 82769 . + . ID=Phyra81821.2;Parent=Phyra81821;constitutive=1;rank=2 scaffold_64 ensembl protein_coding_gene 89009 89890 . + . ID=Phyra81822;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000024;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 89009 89890 . + . ID=Phyra81822;Parent=Phyra81822;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 89009 89890 . + 0 ID=Phyra81822;Parent=Phyra81822;rank=1 scaffold_64 . exon 89009 89890 . + . ID=Phyra81822.1;Parent=Phyra81822;constitutive=1;rank=1 scaffold_64 . repeat_region 90730 90749 . ? . description=trf scaffold_64 . repeat_region 90730 90749 . ? . description=dust scaffold_64 . biological_region 95896 95897 0.999 - . logic_name=eponine scaffold_64 . biological_region 95982 95983 0.999 + . logic_name=eponine scaffold_64 . repeat_region 97213 98733 . + . description=GypsyPi-1c_I-int scaffold_64 . repeat_region 97395 97407 . ? . description=dust scaffold_64 . repeat_region 98995 99076 . ? . description=trf scaffold_64 . repeat_region 104248 104390 . - . description=GypsyPi-1c_LTR scaffold_64 ensembl protein_coding_gene 105447 108521 . + . ID=Phyra81823;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000025;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 105447 108521 . + . ID=Phyra81823;Parent=Phyra81823;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 105447 106327 . + 0 ID=Phyra81823;Parent=Phyra81823;rank=1 scaffold_64 . exon 105447 106327 . + . ID=Phyra81823.1;Parent=Phyra81823;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 . CDS 106585 106648 . + 0 ID=Phyra81823;Parent=Phyra81823;rank=2 scaffold_64 . exon 106585 106648 . + . ID=Phyra81823.2;Parent=Phyra81823;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 . CDS 106931 107276 . + 0 ID=Phyra81823;Parent=Phyra81823;rank=3 scaffold_64 . exon 106931 107276 . + . ID=Phyra81823.3;Parent=Phyra81823;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_64 . CDS 107308 107541 . + 0 ID=Phyra81823;Parent=Phyra81823;rank=4 scaffold_64 . exon 107308 107541 . + . ID=Phyra81823.4;Parent=Phyra81823;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_64 . CDS 107928 108100 . + 0 ID=Phyra81823;Parent=Phyra81823;rank=5 scaffold_64 . exon 107928 108100 . + . ID=Phyra81823.5;Parent=Phyra81823;constitutive=1;ensembl_phase=1;rank=5 scaffold_64 . CDS 108163 108330 . + 0 ID=Phyra81823;Parent=Phyra81823;rank=6 scaffold_64 . exon 108163 108330 . + . ID=Phyra81823.6;Parent=Phyra81823;constitutive=1;rank=6 scaffold_64 . CDS 108408 108521 . + 0 ID=Phyra81823;Parent=Phyra81823;rank=7 scaffold_64 . exon 108408 108521 . + . ID=Phyra81823.7;Parent=Phyra81823;constitutive=1;rank=7 scaffold_64 . repeat_region 111140 111183 . ? . description=trf scaffold_64 . repeat_region 111800 111807 . ? . description=dust scaffold_64 . repeat_region 112637 112694 . ? . description=trf scaffold_64 . repeat_region 115788 121580 . ? . description=dust scaffold_64 . repeat_region 129108 129563 . + . description=GypsyPi-1c_I-int scaffold_64 . repeat_region 129939 145439 . ? . description=dust scaffold_64 . biological_region 145713 145715 0.999 - . logic_name=eponine scaffold_64 . biological_region 145764 145770 0.999 - . logic_name=eponine scaffold_64 . repeat_region 146485 146506 . ? . description=trf scaffold_64 . biological_region 146815 146819 0.999 + . logic_name=eponine scaffold_64 . biological_region 146833 146835 0.999 - . logic_name=eponine scaffold_64 . biological_region 148324 148326 0.999 - . logic_name=eponine scaffold_64 . repeat_region 152121 152346 . ? . description=dust scaffold_64 . repeat_region 158248 158255 . ? . description=dust scaffold_64 ensembl protein_coding_gene 150521 152727 . - . ID=Phyra81824;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000026;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 150521 152727 . - . ID=Phyra81824;Parent=Phyra81824;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 150521 150847 . - 0 ID=Phyra81824;Parent=Phyra81824;rank=3 scaffold_64 . exon 150521 150847 . - . ID=Phyra81824.3;Parent=Phyra81824;constitutive=1;rank=3 scaffold_64 . CDS 151557 151943 . - 0 ID=Phyra81824;Parent=Phyra81824;rank=2 scaffold_64 . exon 151557 151943 . - . ID=Phyra81824.2;Parent=Phyra81824;constitutive=1;rank=2 scaffold_64 . CDS 152350 152727 . - 0 ID=Phyra81824;Parent=Phyra81824;rank=1 scaffold_64 . exon 152350 152727 . - . ID=Phyra81824.1;Parent=Phyra81824;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 155923 156807 . + . ID=Phyra81825;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000027;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 155923 156807 . + . ID=Phyra81825;Parent=Phyra81825;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 155923 156807 . + 0 ID=Phyra81825;Parent=Phyra81825;rank=1 scaffold_64 . exon 155923 156807 . + . ID=Phyra81825.1;Parent=Phyra81825;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 157034 165676 . + . ID=Phyra81826;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000028;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 157034 165676 . + . ID=Phyra81826;Parent=Phyra81826;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 157034 165676 . + 0 ID=Phyra81826;Parent=Phyra81826;rank=1 scaffold_64 . exon 157034 165676 . + . ID=Phyra81826.1;Parent=Phyra81826;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 165806 170926 . + . ID=Phyra71965;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_64000003;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 165806 170926 . + . ID=Phyra71965;Parent=Phyra71965;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 165806 170926 . + 0 ID=Phyra71965;Parent=Phyra71965;rank=1 scaffold_64 . exon 165806 170926 . + . ID=Phyra71965.1;Parent=Phyra71965;constitutive=1;rank=1 scaffold_64 . repeat_region 171176 171208 . ? . description=dust scaffold_64 . biological_region 171365 171368 0.999 + . logic_name=eponine scaffold_64 . biological_region 171382 171389 0.999 + . logic_name=eponine scaffold_64 . biological_region 171409 171412 0.999 + . logic_name=eponine scaffold_64 . repeat_region 171421 171451 . ? . description=trf scaffold_64 . biological_region 171504 171509 0.999 - . logic_name=eponine scaffold_64 . biological_region 171516 171522 0.999 - . logic_name=eponine scaffold_64 . biological_region 171536 171543 0.999 - . logic_name=eponine scaffold_64 . biological_region 173261 173262 0.999 - . logic_name=eponine scaffold_64 . biological_region 173584 173586 0.999 - . logic_name=eponine scaffold_64 . repeat_region 174871 174880 . ? . description=dust scaffold_64 . repeat_region 176418 176428 . ? . description=dust scaffold_64 ensembl protein_coding_gene 171047 171586 . - . ID=Phyra81828;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000030;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 171047 171586 . - . ID=Phyra81828;Parent=Phyra81828;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 171047 171586 . - 0 ID=Phyra81828;Parent=Phyra81828;rank=1 scaffold_64 . exon 171047 171586 . - . ID=Phyra81828.1;Parent=Phyra81828;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 171926 172765 . - . ID=Phyra81829;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000031;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 171926 172765 . - . ID=Phyra81829;Parent=Phyra81829;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 171926 172765 . - 0 ID=Phyra81829;Parent=Phyra81829;rank=1 scaffold_64 . exon 171926 172765 . - . ID=Phyra81829.1;Parent=Phyra81829;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 173127 174842 . + . ID=Phyra81830;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000032;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 173127 174842 . + . ID=Phyra81830;Parent=Phyra81830;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 173127 174842 . + 0 ID=Phyra81830;Parent=Phyra81830;rank=1 scaffold_64 . exon 173127 174842 . + . ID=Phyra81830.1;Parent=Phyra81830;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 175375 175818 . - . ID=Phyra81831;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000033;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 175375 175818 . - . ID=Phyra81831;Parent=Phyra81831;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 175375 175818 . - 0 ID=Phyra81831;Parent=Phyra81831;rank=1 scaffold_64 . exon 175375 175818 . - . ID=Phyra81831.1;Parent=Phyra81831;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 177606 178370 . - . ID=Phyra81832;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000034;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 177606 178370 . - . ID=Phyra81832;Parent=Phyra81832;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 177606 177825 . - 0 ID=Phyra81832;Parent=Phyra81832;rank=2 scaffold_64 . exon 177606 177825 . - . ID=Phyra81832.2;Parent=Phyra81832;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 . CDS 178039 178370 . - 0 ID=Phyra81832;Parent=Phyra81832;rank=1 scaffold_64 . exon 178039 178370 . - . ID=Phyra81832.1;Parent=Phyra81832;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 ensembl protein_coding_gene 179710 181296 . - . ID=Phyra81833;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000035;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 179710 181296 . - . ID=Phyra81833;Parent=Phyra81833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 179710 181296 . - 0 ID=Phyra81833;Parent=Phyra81833;rank=1 scaffold_64 . exon 179710 181296 . - . ID=Phyra81833.1;Parent=Phyra81833;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 182900 183298 . + . ID=Phyra81834;biotype=protein_coding;description=Putative effector protein Avh121 [Source:UniProtKB/TrEMBL%3BAcc:C0J5I4];external_name=fgenesh1_pg.C_scaffold_64000036;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 182900 183298 . + . ID=Phyra81834;Parent=Phyra81834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 182900 183298 . + 0 ID=Phyra81834;Parent=Phyra81834;rank=1 scaffold_64 . exon 182900 183298 . + . ID=Phyra81834.1;Parent=Phyra81834;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 183936 187217 . - . ID=Phyra81835;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000037;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 183936 187217 . - . ID=Phyra81835;Parent=Phyra81835;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 183936 183949 . - 0 ID=Phyra81835;Parent=Phyra81835;rank=7 scaffold_64 . exon 183936 183949 . - . ID=Phyra81835.7;Parent=Phyra81835;constitutive=1;ensembl_phase=1;rank=7 scaffold_64 . CDS 183994 183997 . - 0 ID=Phyra81835;Parent=Phyra81835;rank=6 scaffold_64 . exon 183994 183997 . - . ID=Phyra81835.6;Parent=Phyra81835;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_64 . CDS 184067 184153 . - 0 ID=Phyra81835;Parent=Phyra81835;rank=5 scaffold_64 . exon 184067 184153 . - . ID=Phyra81835.5;Parent=Phyra81835;constitutive=1;rank=5 scaffold_64 . CDS 184268 184403 . - 0 ID=Phyra81835;Parent=Phyra81835;rank=4 scaffold_64 . exon 184268 184403 . - . ID=Phyra81835.4;Parent=Phyra81835;constitutive=1;ensembl_phase=2;rank=4 scaffold_64 . CDS 184670 185368 . - 0 ID=Phyra81835;Parent=Phyra81835;rank=3 scaffold_64 . exon 184670 185368 . - . ID=Phyra81835.3;Parent=Phyra81835;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_64 . CDS 185483 185700 . - 0 ID=Phyra81835;Parent=Phyra81835;rank=2 scaffold_64 . exon 185483 185700 . - . ID=Phyra81835.2;Parent=Phyra81835;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_64 . CDS 186165 187217 . - 0 ID=Phyra81835;Parent=Phyra81835;rank=1 scaffold_64 . exon 186165 187217 . - . ID=Phyra81835.1;Parent=Phyra81835;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 187628 189176 . - . ID=Phyra81836;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000038;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 187628 189176 . - . ID=Phyra81836;Parent=Phyra81836;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 187628 188400 . - 0 ID=Phyra81836;Parent=Phyra81836;rank=3 scaffold_64 . exon 187628 188400 . - . ID=Phyra81836.3;Parent=Phyra81836;constitutive=1;ensembl_phase=1;rank=3 scaffold_64 . CDS 188545 189106 . - 0 ID=Phyra81836;Parent=Phyra81836;rank=2 scaffold_64 . exon 188545 189106 . - . ID=Phyra81836.2;Parent=Phyra81836;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_64 . CDS 189132 189176 . - 0 ID=Phyra81836;Parent=Phyra81836;rank=1 scaffold_64 . repeat_region 189643 189652 . ? . description=dust scaffold_64 . repeat_region 195363 195382 . ? . description=trf scaffold_64 . repeat_region 195363 195382 . ? . description=dust scaffold_64 . repeat_region 196801 196850 . ? . description=dust scaffold_64 ensembl protein_coding_gene 195521 196262 . - . ID=Phyra71966;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_64000004;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 195521 196262 . - . ID=Phyra71966;Parent=Phyra71966;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 195521 195896 . - 0 ID=Phyra71966;Parent=Phyra71966;rank=4 scaffold_64 . exon 195521 195896 . - . ID=Phyra71966.4;Parent=Phyra71966;constitutive=1;ensembl_phase=2;rank=4 scaffold_64 . CDS 195978 196030 . - 0 ID=Phyra71966;Parent=Phyra71966;rank=3 scaffold_64 . exon 195978 196030 . - . ID=Phyra71966.3;Parent=Phyra71966;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_64 . CDS 196101 196157 . - 0 ID=Phyra71966;Parent=Phyra71966;rank=2 scaffold_64 . exon 196101 196157 . - . ID=Phyra71966.2;Parent=Phyra71966;constitutive=1;rank=2 scaffold_64 . CDS 196221 196262 . - 0 ID=Phyra71966;Parent=Phyra71966;rank=1 scaffold_64 . exon 196221 196262 . - . ID=Phyra71966.1;Parent=Phyra71966;constitutive=1;rank=1 scaffold_64 . exon 189132 189176 . - . ID=Phyra81836.1;Parent=Phyra81836;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 196958 198367 . - . ID=Phyra81838;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000040;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 196958 198367 . - . ID=Phyra81838;Parent=Phyra81838;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 196958 198367 . - 0 ID=Phyra81838;Parent=Phyra81838;rank=1 scaffold_64 . exon 196958 198367 . - . ID=Phyra81838.1;Parent=Phyra81838;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 203370 204623 . - . ID=Phyra96139;biotype=protein_coding;external_name=C_scaffold_64000005;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 203370 204623 . - . ID=Phyra96139;Parent=Phyra96139;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 203370 203373 . - 0 ID=Phyra96139;Parent=Phyra96139;rank=5 scaffold_64 . exon 203370 203373 . - . ID=Phyra96139.5;Parent=Phyra96139;constitutive=1;ensembl_phase=2;rank=5 scaffold_64 . CDS 203495 203825 . - 0 ID=Phyra96139;Parent=Phyra96139;rank=4 scaffold_64 . exon 203495 203825 . - . ID=Phyra96139.4;Parent=Phyra96139;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_64 . CDS 203900 204130 . - 0 ID=Phyra96139;Parent=Phyra96139;rank=3 scaffold_64 . exon 203900 204130 . - . ID=Phyra96139.3;Parent=Phyra96139;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_64 . CDS 204201 204277 . - 0 ID=Phyra96139;Parent=Phyra96139;rank=2 scaffold_64 . exon 204201 204277 . - . ID=Phyra96139.2;Parent=Phyra96139;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_64 . CDS 204337 204623 . - 0 ID=Phyra96139;Parent=Phyra96139;rank=1 scaffold_64 . exon 204337 204623 . - . ID=Phyra96139.1;Parent=Phyra96139;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 ensembl protein_coding_gene 204787 209193 . + . ID=Phyra96142;biotype=protein_coding;external_name=C_scaffold_64000008;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 204787 209193 . + . ID=Phyra96142;Parent=Phyra96142;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 204787 205404 . + 0 ID=Phyra96142;Parent=Phyra96142;rank=1 scaffold_64 . exon 204787 205404 . + . ID=Phyra96142.1;Parent=Phyra96142;constitutive=1;rank=1 scaffold_64 . CDS 205469 205591 . + 0 ID=Phyra96142;Parent=Phyra96142;rank=2 scaffold_64 . exon 205469 205591 . + . ID=Phyra96142.2;Parent=Phyra96142;constitutive=1;rank=2 scaffold_64 . CDS 205685 205819 . + 0 ID=Phyra96142;Parent=Phyra96142;rank=3 scaffold_64 . exon 205685 205819 . + . ID=Phyra96142.3;Parent=Phyra96142;constitutive=1;rank=3 scaffold_64 . CDS 205898 206056 . + 0 ID=Phyra96142;Parent=Phyra96142;rank=4 scaffold_64 . exon 205898 206056 . + . ID=Phyra96142.4;Parent=Phyra96142;constitutive=1;rank=4 scaffold_64 . CDS 206157 206251 . + 0 ID=Phyra96142;Parent=Phyra96142;rank=5 scaffold_64 . exon 206157 206251 . + . ID=Phyra96142.5;Parent=Phyra96142;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_64 . CDS 206497 206556 . + 0 ID=Phyra96142;Parent=Phyra96142;rank=6 scaffold_64 . exon 206497 206556 . + . ID=Phyra96142.6;Parent=Phyra96142;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_64 . CDS 206783 206903 . + 0 ID=Phyra96142;Parent=Phyra96142;rank=7 scaffold_64 . exon 206783 206903 . + . ID=Phyra96142.7;Parent=Phyra96142;constitutive=1;ensembl_phase=2;rank=7 scaffold_64 . CDS 207083 207244 . + 0 ID=Phyra96142;Parent=Phyra96142;rank=8 scaffold_64 . exon 207083 207244 . + . ID=Phyra96142.8;Parent=Phyra96142;constitutive=1;rank=8 scaffold_64 . CDS 207318 207379 . + 0 ID=Phyra96142;Parent=Phyra96142;rank=9 scaffold_64 . exon 207318 207379 . + . ID=Phyra96142.9;Parent=Phyra96142;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_64 . CDS 207551 207714 . + 0 ID=Phyra96142;Parent=Phyra96142;rank=10 scaffold_64 . exon 207551 207714 . + . ID=Phyra96142.10;Parent=Phyra96142;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_64 . CDS 207736 207992 . + 0 ID=Phyra96142;Parent=Phyra96142;rank=11 scaffold_64 . exon 207736 207992 . + . ID=Phyra96142.11;Parent=Phyra96142;constitutive=1;ensembl_phase=1;rank=11 scaffold_64 . CDS 208065 208228 . + 0 ID=Phyra96142;Parent=Phyra96142;rank=12 scaffold_64 . exon 208065 208228 . + . ID=Phyra96142.12;Parent=Phyra96142;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_64 . CDS 208295 208376 . + 0 ID=Phyra96142;Parent=Phyra96142;rank=13 scaffold_64 . exon 208295 208376 . + . ID=Phyra96142.13;Parent=Phyra96142;constitutive=1;ensembl_phase=2;rank=13 scaffold_64 . CDS 208453 208555 . + 0 ID=Phyra96142;Parent=Phyra96142;rank=14 scaffold_64 . exon 208453 208555 . + . ID=Phyra96142.14;Parent=Phyra96142;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_64 . CDS 208754 209193 . + 0 ID=Phyra96142;Parent=Phyra96142;rank=15 scaffold_64 . biological_region 209372 209376 0.999 - . logic_name=eponine scaffold_64 . repeat_region 210287 210336 . ? . description=dust scaffold_64 . repeat_region 214350 214404 . ? . description=trf scaffold_64 . biological_region 214798 214798 0.999 + . logic_name=eponine scaffold_64 ensembl protein_coding_gene 217010 219809 . + . ID=Phyra71968;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_64000006;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 217010 219809 . + . ID=Phyra71968;Parent=Phyra71968;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 217010 219052 . + 0 ID=Phyra71968;Parent=Phyra71968;rank=1 scaffold_64 . exon 217010 219052 . + . ID=Phyra71968.1;Parent=Phyra71968;constitutive=1;rank=1 scaffold_64 . CDS 219073 219693 . + 0 ID=Phyra71968;Parent=Phyra71968;rank=2 scaffold_64 . CDS 219726 219809 . + 0 ID=Phyra71968;Parent=Phyra71968;rank=3 scaffold_64 . exon 208754 209193 . + . ID=Phyra96142.15;Parent=Phyra96142;constitutive=1;ensembl_phase=1;rank=15 scaffold_64 ensembl protein_coding_gene 209292 213789 . + . ID=Phyra96143;biotype=protein_coding;external_name=C_scaffold_64000009;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 209292 213789 . + . ID=Phyra96143;Parent=Phyra96143;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 209292 209339 . + 0 ID=Phyra96143;Parent=Phyra96143;rank=1 scaffold_64 . exon 209292 209339 . + . ID=Phyra96143.1;Parent=Phyra96143;constitutive=1;rank=1 scaffold_64 . CDS 209423 209598 . + 0 ID=Phyra96143;Parent=Phyra96143;rank=2 scaffold_64 . exon 209423 209598 . + . ID=Phyra96143.2;Parent=Phyra96143;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_64 . CDS 209656 209719 . + 0 ID=Phyra96143;Parent=Phyra96143;rank=3 scaffold_64 . exon 209656 209719 . + . ID=Phyra96143.3;Parent=Phyra96143;constitutive=1;ensembl_phase=2;rank=3 scaffold_64 . CDS 209788 209857 . + 0 ID=Phyra96143;Parent=Phyra96143;rank=4 scaffold_64 . exon 209788 209857 . + . ID=Phyra96143.4;Parent=Phyra96143;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_64 . CDS 209933 210017 . + 0 ID=Phyra96143;Parent=Phyra96143;rank=5 scaffold_64 . exon 209933 210017 . + . ID=Phyra96143.5;Parent=Phyra96143;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_64 . CDS 210741 210789 . + 0 ID=Phyra96143;Parent=Phyra96143;rank=6 scaffold_64 . exon 210741 210789 . + . ID=Phyra96143.6;Parent=Phyra96143;constitutive=1;ensembl_phase=2;rank=6 scaffold_64 . CDS 211498 212535 . + 0 ID=Phyra96143;Parent=Phyra96143;rank=7 scaffold_64 . exon 211498 212535 . + . ID=Phyra96143.7;Parent=Phyra96143;constitutive=1;rank=7 scaffold_64 . CDS 212587 213789 . + 0 ID=Phyra96143;Parent=Phyra96143;rank=8 scaffold_64 . exon 212587 213789 . + . ID=Phyra96143.8;Parent=Phyra96143;constitutive=1;rank=8 scaffold_64 . exon 219073 219693 . + . ID=Phyra71968.2;Parent=Phyra71968;constitutive=1;rank=2 scaffold_64 . exon 219726 219809 . + . ID=Phyra71968.3;Parent=Phyra71968;constitutive=1;rank=3 scaffold_64 ensembl protein_coding_gene 219978 221024 . + . ID=Phyra71969;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_64000007;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 219978 221024 . + . ID=Phyra71969;Parent=Phyra71969;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 219978 221024 . + 0 ID=Phyra71969;Parent=Phyra71969;rank=1 scaffold_64 . exon 219978 221024 . + . ID=Phyra71969.1;Parent=Phyra71969;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 221152 222392 . - . ID=Phyra81845;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000047;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 221152 222392 . - . ID=Phyra81845;Parent=Phyra81845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 221152 221797 . - 0 ID=Phyra81845;Parent=Phyra81845;rank=2 scaffold_64 . exon 221152 221797 . - . ID=Phyra81845.2;Parent=Phyra81845;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_64 . CDS 222048 222392 . - 0 ID=Phyra81845;Parent=Phyra81845;rank=1 scaffold_64 . exon 222048 222392 . - . ID=Phyra81845.1;Parent=Phyra81845;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 223510 224576 . + . ID=Phyra81846;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000048;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 223510 224576 . + . ID=Phyra81846;Parent=Phyra81846;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 223510 223860 . + 0 ID=Phyra81846;Parent=Phyra81846;rank=1 scaffold_64 . exon 223510 223860 . + . ID=Phyra81846.1;Parent=Phyra81846;constitutive=1;rank=1 scaffold_64 . CDS 223938 224014 . + 0 ID=Phyra81846;Parent=Phyra81846;rank=2 scaffold_64 . exon 223938 224014 . + . ID=Phyra81846.2;Parent=Phyra81846;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_64 . CDS 224147 224576 . + 0 ID=Phyra81846;Parent=Phyra81846;rank=3 scaffold_64 . exon 224147 224576 . + . ID=Phyra81846.3;Parent=Phyra81846;constitutive=1;ensembl_phase=2;rank=3 scaffold_64 ensembl protein_coding_gene 224645 225944 . - . ID=Phyra81847;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000049;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 224645 225944 . - . ID=Phyra81847;Parent=Phyra81847;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 224645 225349 . - 0 ID=Phyra81847;Parent=Phyra81847;rank=2 scaffold_64 . exon 224645 225349 . - . ID=Phyra81847.2;Parent=Phyra81847;constitutive=1;rank=2 scaffold_64 . CDS 225600 225944 . - 0 ID=Phyra81847;Parent=Phyra81847;rank=1 scaffold_64 . exon 225600 225944 . - . ID=Phyra81847.1;Parent=Phyra81847;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 227061 227737 . + . ID=Phyra81848;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000050;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 227061 227737 . + . ID=Phyra81848;Parent=Phyra81848;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 227061 227411 . + 0 ID=Phyra81848;Parent=Phyra81848;rank=1 scaffold_64 . exon 227061 227411 . + . ID=Phyra81848.1;Parent=Phyra81848;constitutive=1;rank=1 scaffold_64 . CDS 227489 227737 . + 0 ID=Phyra81848;Parent=Phyra81848;rank=2 scaffold_64 . exon 227489 227737 . + . ID=Phyra81848.2;Parent=Phyra81848;constitutive=1;rank=2 scaffold_64 . repeat_region 229821 229870 . ? . description=dust scaffold_64 . repeat_region 230764 230798 . ? . description=trf scaffold_64 . biological_region 232620 232621 0.999 - . logic_name=eponine scaffold_64 . biological_region 233057 233058 0.999 + . logic_name=eponine scaffold_64 . biological_region 234211 234214 0.999 - . logic_name=eponine scaffold_64 ensembl protein_coding_gene 232293 233141 . + . ID=Phyra81849;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000051;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 232293 233141 . + . ID=Phyra81849;Parent=Phyra81849;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 232293 233141 . + 0 ID=Phyra81849;Parent=Phyra81849;rank=1 scaffold_64 . exon 232293 233141 . + . ID=Phyra81849.1;Parent=Phyra81849;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 233436 235457 . + . ID=Phyra81850;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000052;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 233436 235457 . + . ID=Phyra81850;Parent=Phyra81850;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 233436 235457 . + 0 ID=Phyra81850;Parent=Phyra81850;rank=1 scaffold_64 . exon 233436 235457 . + . ID=Phyra81850.1;Parent=Phyra81850;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 235518 236582 . - . ID=Phyra81851;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000053;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 235518 236582 . - . ID=Phyra81851;Parent=Phyra81851;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 235518 236582 . - 0 ID=Phyra81851;Parent=Phyra81851;rank=1 scaffold_64 . exon 235518 236582 . - . ID=Phyra81851.1;Parent=Phyra81851;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 236741 239140 . - . ID=Phyra81852;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000054;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 236741 239140 . - . ID=Phyra81852;Parent=Phyra81852;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 236741 239140 . - 0 ID=Phyra81852;Parent=Phyra81852;rank=1 scaffold_64 . exon 236741 239140 . - . ID=Phyra81852.1;Parent=Phyra81852;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 239242 240267 . + . ID=Phyra81853;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000055;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 239242 240267 . + . ID=Phyra81853;Parent=Phyra81853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 239242 240267 . + 0 ID=Phyra81853;Parent=Phyra81853;rank=1 scaffold_64 . exon 239242 240267 . + . ID=Phyra81853.1;Parent=Phyra81853;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 240344 241724 . + . ID=Phyra81854;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000056;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 240344 241724 . + . ID=Phyra81854;Parent=Phyra81854;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 240344 240465 . + 0 ID=Phyra81854;Parent=Phyra81854;rank=1 scaffold_64 . exon 240344 240465 . + . ID=Phyra81854.1;Parent=Phyra81854;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 . CDS 240530 240716 . + 0 ID=Phyra81854;Parent=Phyra81854;rank=2 scaffold_64 . exon 240530 240716 . + . ID=Phyra81854.2;Parent=Phyra81854;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 . CDS 240783 241552 . + 0 ID=Phyra81854;Parent=Phyra81854;rank=3 scaffold_64 . exon 240783 241552 . + . ID=Phyra81854.3;Parent=Phyra81854;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_64 . CDS 241622 241724 . + 0 ID=Phyra81854;Parent=Phyra81854;rank=4 scaffold_64 . exon 241622 241724 . + . ID=Phyra81854.4;Parent=Phyra81854;constitutive=1;ensembl_phase=2;rank=4 scaffold_64 ensembl protein_coding_gene 246314 249007 . + . ID=Phyra96144;biotype=protein_coding;external_name=C_scaffold_64000010;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 246314 249007 . + . ID=Phyra96144;Parent=Phyra96144;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 246314 246460 . + 0 ID=Phyra96144;Parent=Phyra96144;rank=1 scaffold_64 . exon 246314 246460 . + . ID=Phyra96144.1;Parent=Phyra96144;constitutive=1;rank=1 scaffold_64 . CDS 246546 246607 . + 0 ID=Phyra96144;Parent=Phyra96144;rank=2 scaffold_64 . exon 246546 246607 . + . ID=Phyra96144.2;Parent=Phyra96144;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_64 . CDS 246686 246839 . + 0 ID=Phyra96144;Parent=Phyra96144;rank=3 scaffold_64 . exon 246686 246839 . + . ID=Phyra96144.3;Parent=Phyra96144;constitutive=1;ensembl_phase=2;rank=3 scaffold_64 . CDS 246896 246954 . + 0 ID=Phyra96144;Parent=Phyra96144;rank=4 scaffold_64 . exon 246896 246954 . + . ID=Phyra96144.4;Parent=Phyra96144;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_64 . CDS 247021 247092 . + 0 ID=Phyra96144;Parent=Phyra96144;rank=5 scaffold_64 . exon 247021 247092 . + . ID=Phyra96144.5;Parent=Phyra96144;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_64 . CDS 247160 247271 . + 0 ID=Phyra96144;Parent=Phyra96144;rank=6 scaffold_64 . exon 247160 247271 . + . ID=Phyra96144.6;Parent=Phyra96144;constitutive=1;ensembl_phase=2;rank=6 scaffold_64 . CDS 247343 247456 . + 0 ID=Phyra96144;Parent=Phyra96144;rank=7 scaffold_64 . exon 247343 247456 . + . ID=Phyra96144.7;Parent=Phyra96144;constitutive=1;rank=7 scaffold_64 . CDS 247519 247642 . + 0 ID=Phyra96144;Parent=Phyra96144;rank=8 scaffold_64 . exon 247519 247642 . + . ID=Phyra96144.8;Parent=Phyra96144;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_64 . CDS 248319 249007 . + 0 ID=Phyra96144;Parent=Phyra96144;rank=9 scaffold_64 . exon 248319 249007 . + . ID=Phyra96144.9;Parent=Phyra96144;constitutive=1;ensembl_phase=1;rank=9 scaffold_64 . biological_region 249814 249814 0.999 - . logic_name=eponine scaffold_64 . biological_region 253172 253172 0.999 - . logic_name=eponine scaffold_64 . repeat_region 256129 256143 . ? . description=dust scaffold_64 . biological_region 257494 257497 0.999 + . logic_name=eponine scaffold_64 . biological_region 257583 257585 0.999 + . logic_name=eponine scaffold_64 ensembl protein_coding_gene 249084 249857 . - . ID=Phyra81856;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000058;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 249084 249857 . - . ID=Phyra81856;Parent=Phyra81856;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 249084 249857 . - 0 ID=Phyra81856;Parent=Phyra81856;rank=1 scaffold_64 . exon 249084 249857 . - . ID=Phyra81856.1;Parent=Phyra81856;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 251107 255296 . + . ID=Phyra81857;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000059;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 251107 255296 . + . ID=Phyra81857;Parent=Phyra81857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 251107 251370 . + 0 ID=Phyra81857;Parent=Phyra81857;rank=1 scaffold_64 . exon 251107 251370 . + . ID=Phyra81857.1;Parent=Phyra81857;constitutive=1;rank=1 scaffold_64 . CDS 251448 255296 . + 0 ID=Phyra81857;Parent=Phyra81857;rank=2 scaffold_64 . exon 251448 255296 . + . ID=Phyra81857.2;Parent=Phyra81857;constitutive=1;rank=2 scaffold_64 ensembl protein_coding_gene 255560 257333 . - . ID=Phyra81858;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000060;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 255560 257333 . - . ID=Phyra81858;Parent=Phyra81858;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 255560 255731 . - 0 ID=Phyra81858;Parent=Phyra81858;rank=7 scaffold_64 . exon 255560 255731 . - . ID=Phyra81858.7;Parent=Phyra81858;constitutive=1;ensembl_phase=2;rank=7 scaffold_64 . CDS 255803 255865 . - 0 ID=Phyra81858;Parent=Phyra81858;rank=6 scaffold_64 . exon 255803 255865 . - . ID=Phyra81858.6;Parent=Phyra81858;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_64 . CDS 255936 256120 . - 0 ID=Phyra81858;Parent=Phyra81858;rank=5 scaffold_64 . exon 255936 256120 . - . ID=Phyra81858.5;Parent=Phyra81858;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_64 . CDS 256193 256253 . - 0 ID=Phyra81858;Parent=Phyra81858;rank=4 scaffold_64 . exon 256193 256253 . - . ID=Phyra81858.4;Parent=Phyra81858;constitutive=1;ensembl_phase=2;rank=4 scaffold_64 . CDS 256322 256748 . - 0 ID=Phyra81858;Parent=Phyra81858;rank=3 scaffold_64 . exon 256322 256748 . - . ID=Phyra81858.3;Parent=Phyra81858;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_64 . CDS 256815 257145 . - 0 ID=Phyra81858;Parent=Phyra81858;rank=2 scaffold_64 . exon 256815 257145 . - . ID=Phyra81858.2;Parent=Phyra81858;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_64 . CDS 257259 257333 . - 0 ID=Phyra81858;Parent=Phyra81858;rank=1 scaffold_64 . exon 257259 257333 . - . ID=Phyra81858.1;Parent=Phyra81858;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 257506 259122 . - . ID=Phyra81859;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000061;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 257506 259122 . - . ID=Phyra81859;Parent=Phyra81859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 257506 257680 . - 0 ID=Phyra81859;Parent=Phyra81859;rank=5 scaffold_64 . exon 257506 257680 . - . ID=Phyra81859.5;Parent=Phyra81859;constitutive=1;ensembl_phase=2;rank=5 scaffold_64 . CDS 257763 257825 . - 0 ID=Phyra81859;Parent=Phyra81859;rank=4 scaffold_64 . exon 257763 257825 . - . ID=Phyra81859.4;Parent=Phyra81859;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_64 . CDS 257885 258069 . - 0 ID=Phyra81859;Parent=Phyra81859;rank=3 scaffold_64 . exon 257885 258069 . - . ID=Phyra81859.3;Parent=Phyra81859;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_64 . CDS 258143 258203 . - 0 ID=Phyra81859;Parent=Phyra81859;rank=2 scaffold_64 . exon 258143 258203 . - . ID=Phyra81859.2;Parent=Phyra81859;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 . CDS 258275 259122 . - 0 ID=Phyra81859;Parent=Phyra81859;rank=1 scaffold_64 . exon 258275 259122 . - . ID=Phyra81859.1;Parent=Phyra81859;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 . repeat_region 262196 262219 . ? . description=trf scaffold_64 ensembl protein_coding_gene 259273 261707 . - . ID=Phyra81860;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000062;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 259273 261707 . - . ID=Phyra81860;Parent=Phyra81860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 259273 261300 . - 0 ID=Phyra81860;Parent=Phyra81860;rank=2 scaffold_64 . exon 259273 261300 . - . ID=Phyra81860.2;Parent=Phyra81860;constitutive=1;rank=2 scaffold_64 . CDS 261372 261707 . - 0 ID=Phyra81860;Parent=Phyra81860;rank=1 scaffold_64 . exon 261372 261707 . - . ID=Phyra81860.1;Parent=Phyra81860;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 262393 264850 . - . ID=Phyra81861;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000063;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 262393 264850 . - . ID=Phyra81861;Parent=Phyra81861;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 262393 262437 . - 0 ID=Phyra81861;Parent=Phyra81861;rank=3 scaffold_64 . exon 262393 262437 . - . ID=Phyra81861.3;Parent=Phyra81861;constitutive=1;rank=3 scaffold_64 . CDS 262460 264263 . - 0 ID=Phyra81861;Parent=Phyra81861;rank=2 scaffold_64 . exon 262460 264263 . - . ID=Phyra81861.2;Parent=Phyra81861;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 . CDS 264324 264850 . - 0 ID=Phyra81861;Parent=Phyra81861;rank=1 scaffold_64 . exon 264324 264850 . - . ID=Phyra81861.1;Parent=Phyra81861;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 ensembl protein_coding_gene 265029 265492 . + . ID=Phyra81862;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000064;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 265029 265492 . + . ID=Phyra81862;Parent=Phyra81862;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 265029 265156 . + 0 ID=Phyra81862;Parent=Phyra81862;rank=1 scaffold_64 . exon 265029 265156 . + . ID=Phyra81862.1;Parent=Phyra81862;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 . CDS 265227 265306 . + 0 ID=Phyra81862;Parent=Phyra81862;rank=2 scaffold_64 . exon 265227 265306 . + . ID=Phyra81862.2;Parent=Phyra81862;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_64 . CDS 265371 265492 . + 0 ID=Phyra81862;Parent=Phyra81862;rank=3 scaffold_64 . exon 265371 265492 . + . ID=Phyra81862.3;Parent=Phyra81862;constitutive=1;ensembl_phase=1;rank=3 scaffold_64 ensembl protein_coding_gene 265686 266124 . + . ID=Phyra81863;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000065;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 265686 266124 . + . ID=Phyra81863;Parent=Phyra81863;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 265686 266006 . + 0 ID=Phyra81863;Parent=Phyra81863;rank=1 scaffold_64 . exon 265686 266006 . + . ID=Phyra81863.1;Parent=Phyra81863;constitutive=1;rank=1 scaffold_64 . CDS 266077 266124 . + 0 ID=Phyra81863;Parent=Phyra81863;rank=2 scaffold_64 . exon 266077 266124 . + . ID=Phyra81863.2;Parent=Phyra81863;constitutive=1;rank=2 scaffold_64 . repeat_region 269016 269023 . ? . description=dust scaffold_64 . repeat_region 275295 275371 . ? . description=dust scaffold_64 . biological_region 275952 275956 0.999 + . logic_name=eponine scaffold_64 . repeat_region 276396 291090 . ? . description=dust scaffold_64 ensembl protein_coding_gene 271570 272229 . - . ID=Phyra81864;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_64000066;logic_name=jgi_phyra1 scaffold_64 ensembl transcript 271570 272229 . - . ID=Phyra81864;Parent=Phyra81864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_64 . CDS 271570 271974 . - 0 ID=Phyra81864;Parent=Phyra81864;rank=2 scaffold_64 . exon 271570 271974 . - . ID=Phyra81864.2;Parent=Phyra81864;constitutive=1;rank=2 scaffold_64 . CDS 271999 272229 . - 0 ID=Phyra81864;Parent=Phyra81864;rank=1 scaffold_64 . exon 271999 272229 . - . ID=Phyra81864.1;Parent=Phyra81864;constitutive=1;rank=1 scaffold_64 . repeat_region 276396 291090 . ? . description=dust scaffold_64 . repeat_region 292263 293374 . ? . description=dust scaffold_64 . repeat_region 295975 295986 . ? . description=dust scaffold_64 . repeat_region 296240 296289 . ? . description=dust scaffold_64 . repeat_region 297211 297225 . ? . description=dust scaffold_64 . repeat_region 297812 298173 . ? . description=dust scaffold_64 . repeat_region 301115 301563 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_63 1 309551 scaffold_63 . repeat_region 222 229 . ? . description=dust scaffold_63 . repeat_region 1298 29443 . ? . description=dust scaffold_63 . repeat_region 1298 29443 . ? . description=dust scaffold_63 . biological_region 31235 31238 0.999 - . logic_name=eponine scaffold_63 . biological_region 33058 33061 0.999 + . logic_name=eponine scaffold_63 . biological_region 33126 33130 0.999 + . logic_name=eponine scaffold_63 . biological_region 33144 33148 0.999 - . logic_name=eponine scaffold_63 ensembl tRNA_gene 38124 38196 . - . ID=EPrPRAG00000000074;biotype=tRNA;description=tRNA-Arg for anticodon CCU [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_63 ensembl transcript 38124 38196 . - . ID=EPrPRAT00000000074;Parent=EPrPRAG00000000074;biotype=tRNA;logic_name=ncrna_eg scaffold_63 . exon 38124 38196 . - . ID=EPrPRAE00000000074;Parent=EPrPRAT00000000074;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 ensembl protein_coding_gene 33341 33769 . + . ID=Phyra71953;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_63000001;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 33341 33769 . + . ID=Phyra71953;Parent=Phyra71953;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 33341 33483 . + 0 ID=Phyra71953;Parent=Phyra71953;rank=1 scaffold_63 . exon 33341 33483 . + . ID=Phyra71953.1;Parent=Phyra71953;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 . CDS 33553 33769 . + 0 ID=Phyra71953;Parent=Phyra71953;rank=2 scaffold_63 . exon 33553 33769 . + . ID=Phyra71953.2;Parent=Phyra71953;constitutive=1;ensembl_phase=2;rank=2 scaffold_63 ensembl protein_coding_gene 29970 31391 . + . ID=Phyra81730;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000001;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 29970 31391 . + . ID=Phyra81730;Parent=Phyra81730;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 29970 31391 . + 0 ID=Phyra81730;Parent=Phyra81730;rank=1 scaffold_63 . exon 29970 31391 . + . ID=Phyra81730.1;Parent=Phyra81730;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 32358 33236 . - . ID=Phyra81731;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000002;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 32358 33236 . - . ID=Phyra81731;Parent=Phyra81731;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 32358 32365 . - 0 ID=Phyra81731;Parent=Phyra81731;rank=5 scaffold_63 . exon 32358 32365 . - . ID=Phyra81731.5;Parent=Phyra81731;constitutive=1;ensembl_phase=1;rank=5 scaffold_63 . CDS 32459 32622 . - 0 ID=Phyra81731;Parent=Phyra81731;rank=4 scaffold_63 . exon 32459 32622 . - . ID=Phyra81731.4;Parent=Phyra81731;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_63 . CDS 32681 32824 . - 0 ID=Phyra81731;Parent=Phyra81731;rank=3 scaffold_63 . exon 32681 32824 . - . ID=Phyra81731.3;Parent=Phyra81731;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_63 . CDS 32883 32940 . - 0 ID=Phyra81731;Parent=Phyra81731;rank=2 scaffold_63 . exon 32883 32940 . - . ID=Phyra81731.2;Parent=Phyra81731;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_63 . CDS 33011 33236 . - 0 ID=Phyra81731;Parent=Phyra81731;rank=1 scaffold_63 . exon 33011 33236 . - . ID=Phyra81731.1;Parent=Phyra81731;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 ensembl protein_coding_gene 39458 40918 . + . ID=Phyra81733;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000004;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 39458 40918 . + . ID=Phyra81733;Parent=Phyra81733;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 39458 40918 . + 0 ID=Phyra81733;Parent=Phyra81733;rank=1 scaffold_63 . exon 39458 40918 . + . ID=Phyra81733.1;Parent=Phyra81733;constitutive=1;rank=1 scaffold_63 . repeat_region 41563 41571 . ? . description=dust scaffold_63 . repeat_region 44106 44113 . ? . description=dust scaffold_63 . repeat_region 44494 44501 . ? . description=dust scaffold_63 ensembl tRNA_gene 41283 41355 . + . ID=EPrPRAG00000000187;biotype=tRNA;description=tRNA-Arg for anticodon CCU [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_63 ensembl transcript 41283 41355 . + . ID=EPrPRAT00000000187;Parent=EPrPRAG00000000187;biotype=tRNA;logic_name=ncrna_eg scaffold_63 . exon 41283 41355 . + . ID=EPrPRAE00000000187;Parent=EPrPRAT00000000187;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 ensembl protein_coding_gene 45984 49301 . - . ID=Phyra71954;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_63000002;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 45984 49301 . - . ID=Phyra71954;Parent=Phyra71954;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 45984 47795 . - 0 ID=Phyra71954;Parent=Phyra71954;rank=3 scaffold_63 . exon 45984 47795 . - . ID=Phyra71954.3;Parent=Phyra71954;constitutive=1;rank=3 scaffold_63 . CDS 47835 47946 . - 0 ID=Phyra71954;Parent=Phyra71954;rank=2 scaffold_63 . exon 47835 47946 . - . ID=Phyra71954.2;Parent=Phyra71954;constitutive=1;ensembl_phase=2;rank=2 scaffold_63 . CDS 47998 49301 . - 0 ID=Phyra71954;Parent=Phyra71954;rank=1 scaffold_63 . exon 47998 49301 . - . ID=Phyra71954.1;Parent=Phyra71954;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 ensembl protein_coding_gene 41867 42961 . + . ID=Phyra81734;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000005;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 41867 42961 . + . ID=Phyra81734;Parent=Phyra81734;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 41867 42961 . + 0 ID=Phyra81734;Parent=Phyra81734;rank=1 scaffold_63 . exon 41867 42961 . + . ID=Phyra81734.1;Parent=Phyra81734;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 43226 44060 . - . ID=Phyra81735;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000006;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 43226 44060 . - . ID=Phyra81735;Parent=Phyra81735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 43226 43259 . - 0 ID=Phyra81735;Parent=Phyra81735;rank=5 scaffold_63 . exon 43226 43259 . - . ID=Phyra81735.5;Parent=Phyra81735;constitutive=1;ensembl_phase=2;rank=5 scaffold_63 . CDS 43291 43405 . - 0 ID=Phyra81735;Parent=Phyra81735;rank=4 scaffold_63 . exon 43291 43405 . - . ID=Phyra81735.4;Parent=Phyra81735;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_63 . CDS 43462 43525 . - 0 ID=Phyra81735;Parent=Phyra81735;rank=3 scaffold_63 . exon 43462 43525 . - . ID=Phyra81735.3;Parent=Phyra81735;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_63 . CDS 43628 43836 . - 0 ID=Phyra81735;Parent=Phyra81735;rank=2 scaffold_63 . exon 43628 43836 . - . ID=Phyra81735.2;Parent=Phyra81735;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 44033 44060 . - 0 ID=Phyra81735;Parent=Phyra81735;rank=1 scaffold_63 . exon 44033 44060 . - . ID=Phyra81735.1;Parent=Phyra81735;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 ensembl protein_coding_gene 44755 45849 . + . ID=Phyra81736;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000007;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 44755 45849 . + . ID=Phyra81736;Parent=Phyra81736;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 44755 45849 . + 0 ID=Phyra81736;Parent=Phyra81736;rank=1 scaffold_63 . exon 44755 45849 . + . ID=Phyra81736.1;Parent=Phyra81736;constitutive=1;rank=1 scaffold_63 . biological_region 49950 49953 0.999 - . logic_name=eponine scaffold_63 . biological_region 50010 50015 0.999 - . logic_name=eponine scaffold_63 . biological_region 50225 50230 0.999 - . logic_name=eponine scaffold_63 . biological_region 50312 50317 0.999 + . logic_name=eponine scaffold_63 . biological_region 50331 50335 0.999 + . logic_name=eponine scaffold_63 . biological_region 50736 50740 0.999 + . logic_name=eponine scaffold_63 ensembl protein_coding_gene 53606 54326 . - . ID=Phyra51857;biotype=protein_coding;external_name=gwEuk.63.30.1;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 53606 54326 . - . ID=Phyra51857;Parent=Phyra51857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 53606 53747 . - 0 ID=Phyra51857;Parent=Phyra51857;rank=2 scaffold_63 . exon 53606 53747 . - . ID=Phyra51857.2;Parent=Phyra51857;constitutive=1;ensembl_phase=2;rank=2 scaffold_63 . CDS 53827 54326 . - 0 ID=Phyra51857;Parent=Phyra51857;rank=1 scaffold_63 . exon 53827 54326 . - . ID=Phyra51857.1;Parent=Phyra51857;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 ensembl protein_coding_gene 54993 55254 . + . ID=Phyra51863;biotype=protein_coding;external_name=gwEuk.63.36.1;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 54993 55254 . + . ID=Phyra51863;Parent=Phyra51863;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 54993 55046 . + 0 ID=Phyra51863;Parent=Phyra51863;rank=1 scaffold_63 . exon 54993 55046 . + . ID=Phyra51863.1;Parent=Phyra51863;constitutive=1;rank=1 scaffold_63 . CDS 55126 55254 . + 0 ID=Phyra51863;Parent=Phyra51863;rank=2 scaffold_63 . exon 55126 55254 . + . ID=Phyra51863.2;Parent=Phyra51863;constitutive=1;rank=2 scaffold_63 ensembl protein_coding_gene 50063 53135 . - . ID=Phyra81738;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000009;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 50063 53135 . - . ID=Phyra81738;Parent=Phyra81738;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 50063 50164 . - 0 ID=Phyra81738;Parent=Phyra81738;rank=12 scaffold_63 . exon 50063 50164 . - . ID=Phyra81738.12;Parent=Phyra81738;constitutive=1;rank=12 scaffold_63 . CDS 50257 50490 . - 0 ID=Phyra81738;Parent=Phyra81738;rank=11 scaffold_63 . exon 50257 50490 . - . ID=Phyra81738.11;Parent=Phyra81738;constitutive=1;rank=11 scaffold_63 . CDS 50574 50661 . - 0 ID=Phyra81738;Parent=Phyra81738;rank=10 scaffold_63 . exon 50574 50661 . - . ID=Phyra81738.10;Parent=Phyra81738;constitutive=1;ensembl_phase=2;rank=10 scaffold_63 . CDS 50768 50812 . - 0 ID=Phyra81738;Parent=Phyra81738;rank=9 scaffold_63 . exon 50768 50812 . - . ID=Phyra81738.9;Parent=Phyra81738;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_63 . CDS 50882 50957 . - 0 ID=Phyra81738;Parent=Phyra81738;rank=8 scaffold_63 . exon 50882 50957 . - . ID=Phyra81738.8;Parent=Phyra81738;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_63 . CDS 51157 51468 . - 0 ID=Phyra81738;Parent=Phyra81738;rank=7 scaffold_63 . exon 51157 51468 . - . ID=Phyra81738.7;Parent=Phyra81738;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_63 . CDS 51542 51647 . - 0 ID=Phyra81738;Parent=Phyra81738;rank=6 scaffold_63 . exon 51542 51647 . - . ID=Phyra81738.6;Parent=Phyra81738;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_63 . CDS 51739 51809 . - 0 ID=Phyra81738;Parent=Phyra81738;rank=5 scaffold_63 . exon 51739 51809 . - . ID=Phyra81738.5;Parent=Phyra81738;constitutive=1;ensembl_phase=1;rank=5 scaffold_63 . CDS 51873 51949 . - 0 ID=Phyra81738;Parent=Phyra81738;rank=4 scaffold_63 . exon 51873 51949 . - . ID=Phyra81738.4;Parent=Phyra81738;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_63 . CDS 52018 52379 . - 0 ID=Phyra81738;Parent=Phyra81738;rank=3 scaffold_63 . exon 52018 52379 . - . ID=Phyra81738.3;Parent=Phyra81738;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_63 . CDS 52446 52738 . - 0 ID=Phyra81738;Parent=Phyra81738;rank=2 scaffold_63 . exon 52446 52738 . - . ID=Phyra81738.2;Parent=Phyra81738;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 52808 53135 . - 0 ID=Phyra81738;Parent=Phyra81738;rank=1 scaffold_63 . exon 52808 53135 . - . ID=Phyra81738.1;Parent=Phyra81738;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 ensembl protein_coding_gene 55751 59506 . + . ID=Phyra96114;biotype=protein_coding;external_name=C_scaffold_63000004;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 55751 59506 . + . ID=Phyra96114;Parent=Phyra96114;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 55751 56404 . + 0 ID=Phyra96114;Parent=Phyra96114;rank=1 scaffold_63 . exon 55751 56404 . + . ID=Phyra96114.1;Parent=Phyra96114;constitutive=1;rank=1 scaffold_63 . CDS 56435 56644 . + 0 ID=Phyra96114;Parent=Phyra96114;rank=2 scaffold_63 . exon 56435 56644 . + . ID=Phyra96114.2;Parent=Phyra96114;constitutive=1;rank=2 scaffold_63 . CDS 56705 56821 . + 0 ID=Phyra96114;Parent=Phyra96114;rank=3 scaffold_63 . exon 56705 56821 . + . ID=Phyra96114.3;Parent=Phyra96114;constitutive=1;rank=3 scaffold_63 . CDS 57001 57090 . + 0 ID=Phyra96114;Parent=Phyra96114;rank=4 scaffold_63 . exon 57001 57090 . + . ID=Phyra96114.4;Parent=Phyra96114;constitutive=1;rank=4 scaffold_63 . CDS 57469 57470 . + 0 ID=Phyra96114;Parent=Phyra96114;rank=5 scaffold_63 . exon 57469 57470 . + . ID=Phyra96114.5;Parent=Phyra96114;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_63 . CDS 57496 58147 . + 0 ID=Phyra96114;Parent=Phyra96114;rank=6 scaffold_63 . exon 57496 58147 . + . ID=Phyra96114.6;Parent=Phyra96114;constitutive=1;ensembl_phase=2;rank=6 scaffold_63 . CDS 58199 58317 . + 0 ID=Phyra96114;Parent=Phyra96114;rank=7 scaffold_63 . exon 58199 58317 . + . ID=Phyra96114.7;Parent=Phyra96114;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_63 . CDS 58471 58968 . + 0 ID=Phyra96114;Parent=Phyra96114;rank=8 scaffold_63 . exon 58471 58968 . + . ID=Phyra96114.8;Parent=Phyra96114;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_63 . CDS 59410 59506 . + 0 ID=Phyra96114;Parent=Phyra96114;rank=9 scaffold_63 . exon 59410 59506 . + . ID=Phyra96114.9;Parent=Phyra96114;constitutive=1;ensembl_phase=2;rank=9 scaffold_63 . repeat_region 64682 64744 . ? . description=trf scaffold_63 . repeat_region 64684 64744 . ? . description=dust scaffold_63 . repeat_region 64685 64744 . ? . description=trf scaffold_63 . repeat_region 64685 64744 . ? . description=trf scaffold_63 . repeat_region 64754 64773 . ? . description=trf scaffold_63 . repeat_region 65366 65420 . ? . description=trf scaffold_63 . repeat_region 65367 65419 . ? . description=dust scaffold_63 . repeat_region 66396 66408 . ? . description=dust scaffold_63 ensembl protein_coding_gene 60811 63114 . + . ID=Phyra71956;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_63000004;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 60811 63114 . + . ID=Phyra71956;Parent=Phyra71956;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 60811 63114 . + 0 ID=Phyra71956;Parent=Phyra71956;rank=1 scaffold_63 . exon 60811 63114 . + . ID=Phyra71956.1;Parent=Phyra71956;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 64556 68598 . + . ID=Phyra81743;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000014;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 64556 68598 . + . ID=Phyra81743;Parent=Phyra81743;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 64556 66334 . + 0 ID=Phyra81743;Parent=Phyra81743;rank=1 scaffold_63 . exon 64556 66334 . + . ID=Phyra81743.1;Parent=Phyra81743;constitutive=1;rank=1 scaffold_63 . CDS 66415 66923 . + 0 ID=Phyra81743;Parent=Phyra81743;rank=2 scaffold_63 . exon 66415 66923 . + . ID=Phyra81743.2;Parent=Phyra81743;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_63 . CDS 67437 67720 . + 0 ID=Phyra81743;Parent=Phyra81743;rank=3 scaffold_63 . exon 67437 67720 . + . ID=Phyra81743.3;Parent=Phyra81743;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_63 . CDS 67799 67850 . + 0 ID=Phyra81743;Parent=Phyra81743;rank=4 scaffold_63 . exon 67799 67850 . + . ID=Phyra81743.4;Parent=Phyra81743;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_63 . CDS 67922 68030 . + 0 ID=Phyra81743;Parent=Phyra81743;rank=5 scaffold_63 . exon 67922 68030 . + . ID=Phyra81743.5;Parent=Phyra81743;constitutive=1;ensembl_phase=2;rank=5 scaffold_63 . CDS 68104 68173 . + 0 ID=Phyra81743;Parent=Phyra81743;rank=6 scaffold_63 . exon 68104 68173 . + . ID=Phyra81743.6;Parent=Phyra81743;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_63 . CDS 68240 68598 . + 0 ID=Phyra81743;Parent=Phyra81743;rank=7 scaffold_63 . exon 68240 68598 . + . ID=Phyra81743.7;Parent=Phyra81743;constitutive=1;ensembl_phase=1;rank=7 scaffold_63 ensembl protein_coding_gene 68748 69854 . - . ID=Phyra81744;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000015;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 68748 69854 . - . ID=Phyra81744;Parent=Phyra81744;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 68748 69854 . - 0 ID=Phyra81744;Parent=Phyra81744;rank=1 scaffold_63 . exon 68748 69854 . - . ID=Phyra81744.1;Parent=Phyra81744;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 63465 64229 . - . ID=Phyra96118;biotype=protein_coding;external_name=C_scaffold_63000008;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 63465 64229 . - . ID=Phyra96118;Parent=Phyra96118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 63465 63532 . - 0 ID=Phyra96118;Parent=Phyra96118;rank=4 scaffold_63 . exon 63465 63532 . - . ID=Phyra96118.4;Parent=Phyra96118;constitutive=1;ensembl_phase=1;rank=4 scaffold_63 . CDS 63615 63887 . - 0 ID=Phyra96118;Parent=Phyra96118;rank=3 scaffold_63 . exon 63615 63887 . - . ID=Phyra96118.3;Parent=Phyra96118;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_63 . CDS 63950 64020 . - 0 ID=Phyra96118;Parent=Phyra96118;rank=2 scaffold_63 . exon 63950 64020 . - . ID=Phyra96118.2;Parent=Phyra96118;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_63 . CDS 64096 64229 . - 0 ID=Phyra96118;Parent=Phyra96118;rank=1 scaffold_63 . exon 64096 64229 . - . ID=Phyra96118.1;Parent=Phyra96118;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 . biological_region 70257 70257 0.999 - . logic_name=eponine scaffold_63 ensembl protein_coding_gene 69986 71002 . + . ID=Phyra71957;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_63000005;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 69986 71002 . + . ID=Phyra71957;Parent=Phyra71957;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 69986 71002 . + 0 ID=Phyra71957;Parent=Phyra71957;rank=1 scaffold_63 . exon 69986 71002 . + . ID=Phyra71957.1;Parent=Phyra71957;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 73584 74657 . - . ID=Phyra71958;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_63000006;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 73584 74657 . - . ID=Phyra71958;Parent=Phyra71958;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 73584 74006 . - 0 ID=Phyra71958;Parent=Phyra71958;rank=3 scaffold_63 . exon 73584 74006 . - . ID=Phyra71958.3;Parent=Phyra71958;constitutive=1;rank=3 scaffold_63 . CDS 74083 74454 . - 0 ID=Phyra71958;Parent=Phyra71958;rank=2 scaffold_63 . exon 74083 74454 . - . ID=Phyra71958.2;Parent=Phyra71958;constitutive=1;rank=2 scaffold_63 . CDS 74523 74657 . - 0 ID=Phyra71958;Parent=Phyra71958;rank=1 scaffold_63 . exon 74523 74657 . - . ID=Phyra71958.1;Parent=Phyra71958;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 71139 73269 . + . ID=Phyra81746;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000017;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 71139 73269 . + . ID=Phyra81746;Parent=Phyra81746;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 71139 71730 . + 0 ID=Phyra81746;Parent=Phyra81746;rank=1 scaffold_63 . exon 71139 71730 . + . ID=Phyra81746.1;Parent=Phyra81746;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . CDS 71812 73114 . + 0 ID=Phyra81746;Parent=Phyra81746;rank=2 scaffold_63 . exon 71812 73114 . + . ID=Phyra81746.2;Parent=Phyra81746;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_63 . CDS 73209 73269 . + 0 ID=Phyra81746;Parent=Phyra81746;rank=3 scaffold_63 . exon 73209 73269 . + . ID=Phyra81746.3;Parent=Phyra81746;constitutive=1;ensembl_phase=2;rank=3 scaffold_63 ensembl protein_coding_gene 75810 77854 . + . ID=Phyra81748;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000019;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 75810 77854 . + . ID=Phyra81748;Parent=Phyra81748;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 75810 76160 . + 0 ID=Phyra81748;Parent=Phyra81748;rank=1 scaffold_63 . exon 75810 76160 . + . ID=Phyra81748.1;Parent=Phyra81748;constitutive=1;rank=1 scaffold_63 . CDS 76214 76279 . + 0 ID=Phyra81748;Parent=Phyra81748;rank=2 scaffold_63 . exon 76214 76279 . + . ID=Phyra81748.2;Parent=Phyra81748;constitutive=1;rank=2 scaffold_63 . CDS 76344 76483 . + 0 ID=Phyra81748;Parent=Phyra81748;rank=3 scaffold_63 . exon 76344 76483 . + . ID=Phyra81748.3;Parent=Phyra81748;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_63 . CDS 76544 76627 . + 0 ID=Phyra81748;Parent=Phyra81748;rank=4 scaffold_63 . exon 76544 76627 . + . ID=Phyra81748.4;Parent=Phyra81748;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_63 . CDS 76726 77854 . + 0 ID=Phyra81748;Parent=Phyra81748;rank=5 scaffold_63 . exon 76726 77854 . + . ID=Phyra81748.5;Parent=Phyra81748;constitutive=1;ensembl_phase=2;rank=5 scaffold_63 ensembl protein_coding_gene 78131 79229 . - . ID=Phyra81749;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000020;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 78131 79229 . - . ID=Phyra81749;Parent=Phyra81749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 78131 78192 . - 0 ID=Phyra81749;Parent=Phyra81749;rank=2 scaffold_63 . exon 78131 78192 . - . ID=Phyra81749.2;Parent=Phyra81749;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 78230 79229 . - 0 ID=Phyra81749;Parent=Phyra81749;rank=1 scaffold_63 . exon 78230 79229 . - . ID=Phyra81749.1;Parent=Phyra81749;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 ensembl protein_coding_gene 80962 83231 . + . ID=Phyra81750;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000021;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 80962 83231 . + . ID=Phyra81750;Parent=Phyra81750;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 80962 81053 . + 0 ID=Phyra81750;Parent=Phyra81750;rank=1 scaffold_63 . exon 80962 81053 . + . ID=Phyra81750.1;Parent=Phyra81750;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 . CDS 81122 83231 . + 0 ID=Phyra81750;Parent=Phyra81750;rank=2 scaffold_63 . exon 81122 83231 . + . ID=Phyra81750.2;Parent=Phyra81750;constitutive=1;ensembl_phase=2;rank=2 scaffold_63 ensembl protein_coding_gene 83434 90414 . - . ID=Phyra81751;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000022;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 83434 90414 . - . ID=Phyra81751;Parent=Phyra81751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 83434 90414 . - 0 ID=Phyra81751;Parent=Phyra81751;rank=1 scaffold_63 . exon 83434 90414 . - . ID=Phyra81751.1;Parent=Phyra81751;constitutive=1;rank=1 scaffold_63 . biological_region 90014 90015 0.999 - . logic_name=eponine scaffold_63 . biological_region 90262 90269 0.999 + . logic_name=eponine scaffold_63 . biological_region 90787 90789 0.999 - . logic_name=eponine scaffold_63 . biological_region 94183 94183 0.999 + . logic_name=eponine scaffold_63 . biological_region 94276 94280 0.999 - . logic_name=eponine scaffold_63 . repeat_region 99132 99155 . ? . description=trf scaffold_63 ensembl protein_coding_gene 91853 94841 . - . ID=Phyra81752;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000023;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 91853 94841 . - . ID=Phyra81752;Parent=Phyra81752;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 91853 92126 . - 0 ID=Phyra81752;Parent=Phyra81752;rank=7 scaffold_63 . exon 91853 92126 . - . ID=Phyra81752.7;Parent=Phyra81752;constitutive=1;ensembl_phase=2;rank=7 scaffold_63 . CDS 92208 92356 . - 0 ID=Phyra81752;Parent=Phyra81752;rank=6 scaffold_63 . exon 92208 92356 . - . ID=Phyra81752.6;Parent=Phyra81752;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_63 . CDS 92430 92497 . - 0 ID=Phyra81752;Parent=Phyra81752;rank=5 scaffold_63 . exon 92430 92497 . - . ID=Phyra81752.5;Parent=Phyra81752;constitutive=1;ensembl_phase=1;rank=5 scaffold_63 . CDS 92566 92660 . - 0 ID=Phyra81752;Parent=Phyra81752;rank=4 scaffold_63 . exon 92566 92660 . - . ID=Phyra81752.4;Parent=Phyra81752;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_63 . CDS 92734 93846 . - 0 ID=Phyra81752;Parent=Phyra81752;rank=3 scaffold_63 . exon 92734 93846 . - . ID=Phyra81752.3;Parent=Phyra81752;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_63 . CDS 93923 94697 . - 0 ID=Phyra81752;Parent=Phyra81752;rank=2 scaffold_63 . exon 93923 94697 . - . ID=Phyra81752.2;Parent=Phyra81752;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_63 . CDS 94763 94841 . - 0 ID=Phyra81752;Parent=Phyra81752;rank=1 scaffold_63 . exon 94763 94841 . - . ID=Phyra81752.1;Parent=Phyra81752;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 ensembl protein_coding_gene 95051 96168 . + . ID=Phyra81753;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000024;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 95051 96168 . + . ID=Phyra81753;Parent=Phyra81753;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 95051 95233 . + 0 ID=Phyra81753;Parent=Phyra81753;rank=1 scaffold_63 . exon 95051 95233 . + . ID=Phyra81753.1;Parent=Phyra81753;constitutive=1;rank=1 scaffold_63 . CDS 95305 96168 . + 0 ID=Phyra81753;Parent=Phyra81753;rank=2 scaffold_63 . exon 95305 96168 . + . ID=Phyra81753.2;Parent=Phyra81753;constitutive=1;rank=2 scaffold_63 ensembl protein_coding_gene 97411 97866 . - . ID=Phyra81754;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000025;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 97411 97866 . - . ID=Phyra81754;Parent=Phyra81754;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 97411 97866 . - 0 ID=Phyra81754;Parent=Phyra81754;rank=1 scaffold_63 . exon 97411 97866 . - . ID=Phyra81754.1;Parent=Phyra81754;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 99436 100897 . - . ID=Phyra81755;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000026;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 99436 100897 . - . ID=Phyra81755;Parent=Phyra81755;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 99436 99497 . - 0 ID=Phyra81755;Parent=Phyra81755;rank=2 scaffold_63 . exon 99436 99497 . - . ID=Phyra81755.2;Parent=Phyra81755;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 99607 100897 . - 0 ID=Phyra81755;Parent=Phyra81755;rank=1 scaffold_63 . exon 99607 100897 . - . ID=Phyra81755.1;Parent=Phyra81755;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . repeat_region 104826 104833 . ? . description=dust scaffold_63 . repeat_region 105026 105033 . ? . description=dust scaffold_63 . repeat_region 105338 105387 . ? . description=dust scaffold_63 . repeat_region 107937 107986 . ? . description=dust scaffold_63 . repeat_region 108376 108383 . ? . description=dust scaffold_63 . repeat_region 108576 108583 . ? . description=dust scaffold_63 ensembl protein_coding_gene 108683 109825 . - . ID=Phyra81756;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000027;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 108683 109825 . - . ID=Phyra81756;Parent=Phyra81756;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 108683 108912 . - 0 ID=Phyra81756;Parent=Phyra81756;rank=4 scaffold_63 . exon 108683 108912 . - . ID=Phyra81756.4;Parent=Phyra81756;constitutive=1;ensembl_phase=1;rank=4 scaffold_63 . CDS 108966 108990 . - 0 ID=Phyra81756;Parent=Phyra81756;rank=3 scaffold_63 . exon 108966 108990 . - . ID=Phyra81756.3;Parent=Phyra81756;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_63 . CDS 109015 109443 . - 0 ID=Phyra81756;Parent=Phyra81756;rank=2 scaffold_63 . exon 109015 109443 . - . ID=Phyra81756.2;Parent=Phyra81756;constitutive=1;rank=2 scaffold_63 . CDS 109508 109825 . - 0 ID=Phyra81756;Parent=Phyra81756;rank=1 scaffold_63 . exon 109508 109825 . - . ID=Phyra81756.1;Parent=Phyra81756;constitutive=1;rank=1 scaffold_63 ensembl pseudogene 119592 120201 . - . ID=Phyra51888;biotype=pseudogene;external_name=gwEuk.63.61.1;logic_name=jgi_phyra1 scaffold_63 ensembl pseudogene 119592 120201 . - . ID=Phyra51888;Parent=Phyra51888;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_63 . exon 119592 120201 . - . ID=Phyra51888.1;Parent=Phyra51888;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 ensembl protein_coding_gene 111324 112037 . - . ID=Phyra81757;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000028;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 111324 112037 . - . ID=Phyra81757;Parent=Phyra81757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 111324 111559 . - 0 ID=Phyra81757;Parent=Phyra81757;rank=2 scaffold_63 . exon 111324 111559 . - . ID=Phyra81757.2;Parent=Phyra81757;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 111629 112037 . - 0 ID=Phyra81757;Parent=Phyra81757;rank=1 scaffold_63 . exon 111629 112037 . - . ID=Phyra81757.1;Parent=Phyra81757;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . repeat_region 122238 122247 . ? . description=dust scaffold_63 . repeat_region 122812 122821 . ? . description=dust scaffold_63 . biological_region 123980 123987 0.999 + . logic_name=eponine scaffold_63 . biological_region 126016 126020 0.999 + . logic_name=eponine scaffold_63 . repeat_region 126374 126490 . + . description=GypsyPi-1c_I-int scaffold_63 . repeat_region 126868 126917 . ? . description=dust scaffold_63 . repeat_region 127841 127890 . ? . description=dust scaffold_63 . repeat_region 128024 128033 . ? . description=dust scaffold_63 . biological_region 129191 129198 0.999 + . logic_name=eponine scaffold_63 ensembl protein_coding_gene 123879 125116 . + . ID=Phyra81758;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000029;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 123879 125116 . + . ID=Phyra81758;Parent=Phyra81758;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 123879 124137 . + 0 ID=Phyra81758;Parent=Phyra81758;rank=1 scaffold_63 . exon 123879 124137 . + . ID=Phyra81758.1;Parent=Phyra81758;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . CDS 124275 124513 . + 0 ID=Phyra81758;Parent=Phyra81758;rank=2 scaffold_63 . exon 124275 124513 . + . ID=Phyra81758.2;Parent=Phyra81758;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 124581 124793 . + 0 ID=Phyra81758;Parent=Phyra81758;rank=3 scaffold_63 . exon 124581 124793 . + . ID=Phyra81758.3;Parent=Phyra81758;constitutive=1;rank=3 scaffold_63 . CDS 124928 125116 . + 0 ID=Phyra81758;Parent=Phyra81758;rank=4 scaffold_63 . exon 124928 125116 . + . ID=Phyra81758.4;Parent=Phyra81758;constitutive=1;rank=4 scaffold_63 ensembl protein_coding_gene 129090 130338 . + . ID=Phyra81759;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000030;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 129090 130338 . + . ID=Phyra81759;Parent=Phyra81759;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 129090 129348 . + 0 ID=Phyra81759;Parent=Phyra81759;rank=1 scaffold_63 . exon 129090 129348 . + . ID=Phyra81759.1;Parent=Phyra81759;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . CDS 129486 129724 . + 0 ID=Phyra81759;Parent=Phyra81759;rank=2 scaffold_63 . exon 129486 129724 . + . ID=Phyra81759.2;Parent=Phyra81759;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 129803 130015 . + 0 ID=Phyra81759;Parent=Phyra81759;rank=3 scaffold_63 . exon 129803 130015 . + . ID=Phyra81759.3;Parent=Phyra81759;constitutive=1;rank=3 scaffold_63 . CDS 130150 130338 . + 0 ID=Phyra81759;Parent=Phyra81759;rank=4 scaffold_63 . repeat_region 135865 135911 . ? . description=trf scaffold_63 . repeat_region 136488 136507 . ? . description=trf scaffold_63 . repeat_region 136716 136775 . ? . description=trf scaffold_63 . repeat_region 136812 136833 . ? . description=trf scaffold_63 . exon 130150 130338 . + . ID=Phyra81759.4;Parent=Phyra81759;constitutive=1;rank=4 scaffold_63 ensembl protein_coding_gene 130711 133290 . - . ID=Phyra81760;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000031;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 130711 133290 . - . ID=Phyra81760;Parent=Phyra81760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 130711 130995 . - 0 ID=Phyra81760;Parent=Phyra81760;rank=6 scaffold_63 . exon 130711 130995 . - . ID=Phyra81760.6;Parent=Phyra81760;constitutive=1;rank=6 scaffold_63 . CDS 131094 131671 . - 0 ID=Phyra81760;Parent=Phyra81760;rank=5 scaffold_63 . exon 131094 131671 . - . ID=Phyra81760.5;Parent=Phyra81760;constitutive=1;ensembl_phase=1;rank=5 scaffold_63 . CDS 131776 131927 . - 0 ID=Phyra81760;Parent=Phyra81760;rank=4 scaffold_63 . exon 131776 131927 . - . ID=Phyra81760.4;Parent=Phyra81760;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_63 . CDS 132520 132856 . - 0 ID=Phyra81760;Parent=Phyra81760;rank=3 scaffold_63 . exon 132520 132856 . - . ID=Phyra81760.3;Parent=Phyra81760;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_63 . CDS 132919 133054 . - 0 ID=Phyra81760;Parent=Phyra81760;rank=2 scaffold_63 . exon 132919 133054 . - . ID=Phyra81760.2;Parent=Phyra81760;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_63 . CDS 133141 133290 . - 0 ID=Phyra81760;Parent=Phyra81760;rank=1 scaffold_63 . exon 133141 133290 . - . ID=Phyra81760.1;Parent=Phyra81760;constitutive=1;rank=1 scaffold_63 . biological_region 141843 141847 0.999 - . logic_name=eponine scaffold_63 . repeat_region 142034 142061 . ? . description=dust scaffold_63 . biological_region 146612 146615 0.999 - . logic_name=eponine scaffold_63 ensembl protein_coding_gene 140898 144394 . + . ID=Phyra81761;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000032;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 140898 144394 . + . ID=Phyra81761;Parent=Phyra81761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 140898 141366 . + 0 ID=Phyra81761;Parent=Phyra81761;rank=1 scaffold_63 . exon 140898 141366 . + . ID=Phyra81761.1;Parent=Phyra81761;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . CDS 141749 142169 . + 0 ID=Phyra81761;Parent=Phyra81761;rank=2 scaffold_63 . exon 141749 142169 . + . ID=Phyra81761.2;Parent=Phyra81761;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_63 . CDS 142245 142347 . + 0 ID=Phyra81761;Parent=Phyra81761;rank=3 scaffold_63 . exon 142245 142347 . + . ID=Phyra81761.3;Parent=Phyra81761;constitutive=1;ensembl_phase=2;rank=3 scaffold_63 . CDS 142433 143744 . + 0 ID=Phyra81761;Parent=Phyra81761;rank=4 scaffold_63 . exon 142433 143744 . + . ID=Phyra81761.4;Parent=Phyra81761;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_63 . CDS 144042 144394 . + 0 ID=Phyra81761;Parent=Phyra81761;rank=5 scaffold_63 . exon 144042 144394 . + . ID=Phyra81761.5;Parent=Phyra81761;constitutive=1;ensembl_phase=1;rank=5 scaffold_63 ensembl protein_coding_gene 144723 146750 . - . ID=Phyra81762;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000033;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 144723 146750 . - . ID=Phyra81762;Parent=Phyra81762;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 144723 146750 . - 0 ID=Phyra81762;Parent=Phyra81762;rank=1 scaffold_63 . exon 144723 146750 . - . ID=Phyra81762.1;Parent=Phyra81762;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 148662 153268 . - . ID=Phyra81763;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000034;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 148662 153268 . - . ID=Phyra81763;Parent=Phyra81763;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 148662 151906 . - 0 ID=Phyra81763;Parent=Phyra81763;rank=6 scaffold_63 . exon 148662 151906 . - . ID=Phyra81763.6;Parent=Phyra81763;constitutive=1;ensembl_phase=1;rank=6 scaffold_63 . CDS 152079 152079 . - 0 ID=Phyra81763;Parent=Phyra81763;rank=5 scaffold_63 . CDS 152182 152642 . - 0 ID=Phyra81763;Parent=Phyra81763;rank=4 scaffold_63 . CDS 152695 152765 . - 0 ID=Phyra81763;Parent=Phyra81763;rank=3 scaffold_63 . CDS 152823 153082 . - 0 ID=Phyra81763;Parent=Phyra81763;rank=2 scaffold_63 . CDS 153158 153268 . - 0 ID=Phyra81763;Parent=Phyra81763;rank=1 scaffold_63 . repeat_region 154650 154770 . ? . description=trf scaffold_63 . repeat_region 158259 158298 . ? . description=trf scaffold_63 . exon 152079 152079 . - . ID=Phyra81763.5;Parent=Phyra81763;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_63 . exon 152182 152642 . - . ID=Phyra81763.4;Parent=Phyra81763;constitutive=1;ensembl_phase=1;rank=4 scaffold_63 . exon 152695 152765 . - . ID=Phyra81763.3;Parent=Phyra81763;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_63 . exon 152823 153082 . - . ID=Phyra81763.2;Parent=Phyra81763;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_63 . exon 153158 153268 . - . ID=Phyra81763.1;Parent=Phyra81763;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 154130 154894 . + . ID=Phyra81764;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000035;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 154130 154894 . + . ID=Phyra81764;Parent=Phyra81764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 154130 154894 . + 0 ID=Phyra81764;Parent=Phyra81764;rank=1 scaffold_63 . exon 154130 154894 . + . ID=Phyra81764.1;Parent=Phyra81764;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 155085 156434 . - . ID=Phyra81765;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000036;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 155085 156434 . - . ID=Phyra81765;Parent=Phyra81765;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 155085 156434 . - 0 ID=Phyra81765;Parent=Phyra81765;rank=1 scaffold_63 . exon 155085 156434 . - . ID=Phyra81765.1;Parent=Phyra81765;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 156667 159507 . - . ID=Phyra81766;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000037;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 156667 159507 . - . ID=Phyra81766;Parent=Phyra81766;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 156667 158814 . - 0 ID=Phyra81766;Parent=Phyra81766;rank=3 scaffold_63 . exon 156667 158814 . - . ID=Phyra81766.3;Parent=Phyra81766;constitutive=1;rank=3 scaffold_63 . CDS 158888 159421 . - 0 ID=Phyra81766;Parent=Phyra81766;rank=2 scaffold_63 . exon 158888 159421 . - . ID=Phyra81766.2;Parent=Phyra81766;constitutive=1;rank=2 scaffold_63 . CDS 159499 159507 . - 0 ID=Phyra81766;Parent=Phyra81766;rank=1 scaffold_63 . exon 159499 159507 . - . ID=Phyra81766.1;Parent=Phyra81766;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 159661 161056 . + . ID=Phyra81767;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000038;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 159661 161056 . + . ID=Phyra81767;Parent=Phyra81767;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 159661 160867 . + 0 ID=Phyra81767;Parent=Phyra81767;rank=1 scaffold_63 . exon 159661 160867 . + . ID=Phyra81767.1;Parent=Phyra81767;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . CDS 161040 161056 . + 0 ID=Phyra81767;Parent=Phyra81767;rank=2 scaffold_63 . biological_region 169313 169315 0.999 - . logic_name=eponine scaffold_63 . biological_region 169366 169369 0.999 + . logic_name=eponine scaffold_63 . exon 161040 161056 . + . ID=Phyra81767.2;Parent=Phyra81767;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . repeat_region 173105 173136 . ? . description=trf scaffold_63 . repeat_region 173981 174078 . ? . description=trf scaffold_63 . repeat_region 174463 174482 . ? . description=trf scaffold_63 . repeat_region 174552 174565 . ? . description=dust scaffold_63 . repeat_region 174762 174805 . ? . description=trf scaffold_63 . repeat_region 178290 178309 . ? . description=trf scaffold_63 ensembl protein_coding_gene 171388 172461 . + . ID=Phyra81768;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000039;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 171388 172461 . + . ID=Phyra81768;Parent=Phyra81768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 171388 172461 . + 0 ID=Phyra81768;Parent=Phyra81768;rank=1 scaffold_63 . exon 171388 172461 . + . ID=Phyra81768.1;Parent=Phyra81768;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 173115 174452 . + . ID=Phyra81769;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000040;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 173115 174452 . + . ID=Phyra81769;Parent=Phyra81769;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 173115 174452 . + 0 ID=Phyra81769;Parent=Phyra81769;rank=1 scaffold_63 . exon 173115 174452 . + . ID=Phyra81769.1;Parent=Phyra81769;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 175088 176136 . + . ID=Phyra81770;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000041;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 175088 176136 . + . ID=Phyra81770;Parent=Phyra81770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 175088 175810 . + 0 ID=Phyra81770;Parent=Phyra81770;rank=1 scaffold_63 . exon 175088 175810 . + . ID=Phyra81770.1;Parent=Phyra81770;constitutive=1;rank=1 scaffold_63 . CDS 175873 176136 . + 0 ID=Phyra81770;Parent=Phyra81770;rank=2 scaffold_63 . exon 175873 176136 . + . ID=Phyra81770.2;Parent=Phyra81770;constitutive=1;rank=2 scaffold_63 ensembl protein_coding_gene 178708 180396 . + . ID=Phyra81771;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000042;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 178708 180396 . + . ID=Phyra81771;Parent=Phyra81771;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 178708 180396 . + 0 ID=Phyra81771;Parent=Phyra81771;rank=1 scaffold_63 . exon 178708 180396 . + . ID=Phyra81771.1;Parent=Phyra81771;constitutive=1;rank=1 scaffold_63 . biological_region 182680 182682 0.999 + . logic_name=eponine scaffold_63 . biological_region 185716 185718 0.999 - . logic_name=eponine scaffold_63 . biological_region 185807 185810 0.999 + . logic_name=eponine scaffold_63 ensembl protein_coding_gene 182268 183272 . + . ID=Phyra81772;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000043;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 182268 183272 . + . ID=Phyra81772;Parent=Phyra81772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 182268 183272 . + 0 ID=Phyra81772;Parent=Phyra81772;rank=1 scaffold_63 . exon 182268 183272 . + . ID=Phyra81772.1;Parent=Phyra81772;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 184611 186257 . + . ID=Phyra81773;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000044;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 184611 186257 . + . ID=Phyra81773;Parent=Phyra81773;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 184611 186257 . + 0 ID=Phyra81773;Parent=Phyra81773;rank=1 scaffold_63 . exon 184611 186257 . + . ID=Phyra81773.1;Parent=Phyra81773;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 187440 188965 . - . ID=Phyra81774;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000045;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 187440 188965 . - . ID=Phyra81774;Parent=Phyra81774;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 187440 187572 . - 0 ID=Phyra81774;Parent=Phyra81774;rank=2 scaffold_63 . exon 187440 187572 . - . ID=Phyra81774.2;Parent=Phyra81774;constitutive=1;ensembl_phase=2;rank=2 scaffold_63 . CDS 187797 188965 . - 0 ID=Phyra81774;Parent=Phyra81774;rank=1 scaffold_63 . exon 187797 188965 . - . ID=Phyra81774.1;Parent=Phyra81774;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 . repeat_region 199504 199512 . ? . description=dust scaffold_63 ensembl protein_coding_gene 189822 191468 . - . ID=Phyra81775;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000046;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 189822 191468 . - . ID=Phyra81775;Parent=Phyra81775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 189822 191468 . - 0 ID=Phyra81775;Parent=Phyra81775;rank=1 scaffold_63 . exon 189822 191468 . - . ID=Phyra81775.1;Parent=Phyra81775;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 199701 200417 . - . ID=Phyra81776;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000047;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 199701 200417 . - . ID=Phyra81776;Parent=Phyra81776;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 199701 200417 . - 0 ID=Phyra81776;Parent=Phyra81776;rank=1 scaffold_63 . exon 199701 200417 . - . ID=Phyra81776.1;Parent=Phyra81776;constitutive=1;rank=1 scaffold_63 . repeat_region 203819 203878 . ? . description=trf scaffold_63 . biological_region 206550 206551 0.999 + . logic_name=eponine scaffold_63 . repeat_region 209445 209471 . ? . description=trf scaffold_63 ensembl protein_coding_gene 202553 202975 . - . ID=Phyra81777;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000048;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 202553 202975 . - . ID=Phyra81777;Parent=Phyra81777;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 202553 202975 . - 0 ID=Phyra81777;Parent=Phyra81777;rank=1 scaffold_63 . exon 202553 202975 . - . ID=Phyra81777.1;Parent=Phyra81777;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 205201 208771 . - . ID=Phyra81778;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000049;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 205201 208771 . - . ID=Phyra81778;Parent=Phyra81778;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 205201 205251 . - 0 ID=Phyra81778;Parent=Phyra81778;rank=9 scaffold_63 . exon 205201 205251 . - . ID=Phyra81778.9;Parent=Phyra81778;constitutive=1;rank=9 scaffold_63 . CDS 205331 205570 . - 0 ID=Phyra81778;Parent=Phyra81778;rank=8 scaffold_63 . exon 205331 205570 . - . ID=Phyra81778.8;Parent=Phyra81778;constitutive=1;rank=8 scaffold_63 . CDS 205592 205885 . - 0 ID=Phyra81778;Parent=Phyra81778;rank=7 scaffold_63 . exon 205592 205885 . - . ID=Phyra81778.7;Parent=Phyra81778;constitutive=1;rank=7 scaffold_63 . CDS 205991 206327 . - 0 ID=Phyra81778;Parent=Phyra81778;rank=6 scaffold_63 . exon 205991 206327 . - . ID=Phyra81778.6;Parent=Phyra81778;constitutive=1;ensembl_phase=2;rank=6 scaffold_63 . CDS 206422 206488 . - 0 ID=Phyra81778;Parent=Phyra81778;rank=5 scaffold_63 . exon 206422 206488 . - . ID=Phyra81778.5;Parent=Phyra81778;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_63 . CDS 206599 207952 . - 0 ID=Phyra81778;Parent=Phyra81778;rank=4 scaffold_63 . exon 206599 207952 . - . ID=Phyra81778.4;Parent=Phyra81778;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_63 . CDS 207974 208039 . - 0 ID=Phyra81778;Parent=Phyra81778;rank=3 scaffold_63 . exon 207974 208039 . - . ID=Phyra81778.3;Parent=Phyra81778;constitutive=1;rank=3 scaffold_63 . CDS 208082 208213 . - 0 ID=Phyra81778;Parent=Phyra81778;rank=2 scaffold_63 . exon 208082 208213 . - . ID=Phyra81778.2;Parent=Phyra81778;constitutive=1;rank=2 scaffold_63 . CDS 208247 208771 . - 0 ID=Phyra81778;Parent=Phyra81778;rank=1 scaffold_63 . exon 208247 208771 . - . ID=Phyra81778.1;Parent=Phyra81778;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 215846 217098 . - . ID=Phyra71959;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_63000007;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 215846 217098 . - . ID=Phyra71959;Parent=Phyra71959;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 215846 215982 . - 0 ID=Phyra71959;Parent=Phyra71959;rank=2 scaffold_63 . exon 215846 215982 . - . ID=Phyra71959.2;Parent=Phyra71959;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 216048 217098 . - 0 ID=Phyra71959;Parent=Phyra71959;rank=1 scaffold_63 . exon 216048 217098 . - . ID=Phyra71959.1;Parent=Phyra71959;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 ensembl protein_coding_gene 211421 214861 . - . ID=Phyra81779;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000050;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 211421 214861 . - . ID=Phyra81779;Parent=Phyra81779;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 211421 211447 . - 0 ID=Phyra81779;Parent=Phyra81779;rank=5 scaffold_63 . exon 211421 211447 . - . ID=Phyra81779.5;Parent=Phyra81779;constitutive=1;rank=5 scaffold_63 . CDS 211531 214105 . - 0 ID=Phyra81779;Parent=Phyra81779;rank=4 scaffold_63 . exon 211531 214105 . - . ID=Phyra81779.4;Parent=Phyra81779;constitutive=1;ensembl_phase=2;rank=4 scaffold_63 . CDS 214168 214251 . - 0 ID=Phyra81779;Parent=Phyra81779;rank=3 scaffold_63 . exon 214168 214251 . - . ID=Phyra81779.3;Parent=Phyra81779;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_63 . CDS 214328 214396 . - 0 ID=Phyra81779;Parent=Phyra81779;rank=2 scaffold_63 . exon 214328 214396 . - . ID=Phyra81779.2;Parent=Phyra81779;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_63 . CDS 214470 214861 . - 0 ID=Phyra81779;Parent=Phyra81779;rank=1 scaffold_63 . exon 214470 214861 . - . ID=Phyra81779.1;Parent=Phyra81779;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 ensembl protein_coding_gene 218485 218922 . - . ID=Phyra81781;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000052;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 218485 218922 . - . ID=Phyra81781;Parent=Phyra81781;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 218485 218922 . - 0 ID=Phyra81781;Parent=Phyra81781;rank=1 scaffold_63 . exon 218485 218922 . - . ID=Phyra81781.1;Parent=Phyra81781;constitutive=1;rank=1 scaffold_63 . biological_region 220123 220126 0.999 + . logic_name=eponine scaffold_63 . biological_region 221169 221173 0.999 + . logic_name=eponine scaffold_63 . repeat_region 221379 221389 . ? . description=dust scaffold_63 . repeat_region 221982 222031 . ? . description=dust scaffold_63 . biological_region 222263 222267 0.999 + . logic_name=eponine scaffold_63 . repeat_region 222473 222490 . ? . description=dust scaffold_63 . repeat_region 222898 222947 . ? . description=dust scaffold_63 . repeat_region 224300 224404 . ? . description=trf scaffold_63 . biological_region 224341 224347 0.999 - . logic_name=eponine scaffold_63 . biological_region 224555 224561 0.999 - . logic_name=eponine scaffold_63 . repeat_region 225095 225144 . ? . description=dust scaffold_63 ensembl protein_coding_gene 220096 220557 . - . ID=Phyra81782;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000053;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 220096 220557 . - . ID=Phyra81782;Parent=Phyra81782;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 220096 220557 . - 0 ID=Phyra81782;Parent=Phyra81782;rank=1 scaffold_63 . exon 220096 220557 . - . ID=Phyra81782.1;Parent=Phyra81782;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 224234 224671 . + . ID=Phyra81783;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000054;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 224234 224671 . + . ID=Phyra81783;Parent=Phyra81783;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 224234 224671 . + 0 ID=Phyra81783;Parent=Phyra81783;rank=1 scaffold_63 . exon 224234 224671 . + . ID=Phyra81783.1;Parent=Phyra81783;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 238579 239067 . + . ID=Phyra81784;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000055;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 238579 239067 . + . ID=Phyra81784;Parent=Phyra81784;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 238579 239067 . + 0 ID=Phyra81784;Parent=Phyra81784;rank=1 scaffold_63 . exon 238579 239067 . + . ID=Phyra81784.1;Parent=Phyra81784;constitutive=1;rank=1 scaffold_63 . repeat_region 242109 242121 . ? . description=dust scaffold_63 . repeat_region 242335 242428 . ? . description=trf scaffold_63 . biological_region 244002 244003 0.999 - . logic_name=eponine scaffold_63 . repeat_region 244998 245016 . ? . description=dust scaffold_63 . repeat_region 245096 245140 . ? . description=trf scaffold_63 ensembl protein_coding_gene 248456 249583 . + . ID=Phyra71960;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_63000008;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 248456 249583 . + . ID=Phyra71960;Parent=Phyra71960;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 248456 249583 . + 0 ID=Phyra71960;Parent=Phyra71960;rank=1 scaffold_63 . exon 248456 249583 . + . ID=Phyra71960.1;Parent=Phyra71960;constitutive=1;rank=1 scaffold_63 . repeat_region 261085 261092 . ? . description=dust scaffold_63 . repeat_region 261806 261923 . ? . description=trf scaffold_63 . repeat_region 262322 262334 . ? . description=dust scaffold_63 . repeat_region 262688 262696 . ? . description=dust scaffold_63 . repeat_region 265356 265366 . ? . description=dust scaffold_63 . repeat_region 265574 265583 . ? . description=dust scaffold_63 ensembl protein_coding_gene 274540 276489 . + . ID=Phyra81786;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000057;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 274540 276489 . + . ID=Phyra81786;Parent=Phyra81786;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 274540 274577 . + 0 ID=Phyra81786;Parent=Phyra81786;rank=1 scaffold_63 . exon 274540 274577 . + . ID=Phyra81786.1;Parent=Phyra81786;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 . CDS 274956 275322 . + 0 ID=Phyra81786;Parent=Phyra81786;rank=2 scaffold_63 . exon 274956 275322 . + . ID=Phyra81786.2;Parent=Phyra81786;constitutive=1;ensembl_phase=2;rank=2 scaffold_63 . CDS 275344 276489 . + 0 ID=Phyra81786;Parent=Phyra81786;rank=3 scaffold_63 . exon 275344 276489 . + . ID=Phyra81786.3;Parent=Phyra81786;constitutive=1;rank=3 scaffold_63 . repeat_region 279906 279923 . ? . description=dust scaffold_63 . repeat_region 281615 281670 . ? . description=trf scaffold_63 . repeat_region 281615 281678 . ? . description=trf scaffold_63 . biological_region 284442 284443 0.999 + . logic_name=eponine scaffold_63 . repeat_region 284853 284900 . ? . description=dust scaffold_63 . repeat_region 285826 285833 . ? . description=dust scaffold_63 ensembl protein_coding_gene 280778 282483 . + . ID=Phyra81787;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000058;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 280778 282483 . + . ID=Phyra81787;Parent=Phyra81787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 280778 282039 . + 0 ID=Phyra81787;Parent=Phyra81787;rank=1 scaffold_63 . exon 280778 282039 . + . ID=Phyra81787.1;Parent=Phyra81787;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 . CDS 282104 282357 . + 0 ID=Phyra81787;Parent=Phyra81787;rank=2 scaffold_63 . exon 282104 282357 . + . ID=Phyra81787.2;Parent=Phyra81787;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_63 . CDS 282479 282483 . + 0 ID=Phyra81787;Parent=Phyra81787;rank=3 scaffold_63 . exon 282479 282483 . + . ID=Phyra81787.3;Parent=Phyra81787;constitutive=1;ensembl_phase=1;rank=3 scaffold_63 ensembl protein_coding_gene 284363 286246 . + . ID=Phyra81788;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000059;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 284363 286246 . + . ID=Phyra81788;Parent=Phyra81788;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 284363 284668 . + 0 ID=Phyra81788;Parent=Phyra81788;rank=1 scaffold_63 . exon 284363 284668 . + . ID=Phyra81788.1;Parent=Phyra81788;constitutive=1;rank=1 scaffold_63 . CDS 284746 285290 . + 0 ID=Phyra81788;Parent=Phyra81788;rank=2 scaffold_63 . exon 284746 285290 . + . ID=Phyra81788.2;Parent=Phyra81788;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_63 . CDS 285373 285620 . + 0 ID=Phyra81788;Parent=Phyra81788;rank=3 scaffold_63 . exon 285373 285620 . + . ID=Phyra81788.3;Parent=Phyra81788;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_63 . CDS 285732 285786 . + 0 ID=Phyra81788;Parent=Phyra81788;rank=4 scaffold_63 . exon 285732 285786 . + . ID=Phyra81788.4;Parent=Phyra81788;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_63 . CDS 285856 286246 . + 0 ID=Phyra81788;Parent=Phyra81788;rank=5 scaffold_63 . exon 285856 286246 . + . ID=Phyra81788.5;Parent=Phyra81788;constitutive=1;ensembl_phase=2;rank=5 scaffold_63 ensembl protein_coding_gene 288573 290016 . - . ID=Phyra96127;biotype=protein_coding;external_name=C_scaffold_63000017;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 288573 290016 . - . ID=Phyra96127;Parent=Phyra96127;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 288573 288579 . - 0 ID=Phyra96127;Parent=Phyra96127;rank=5 scaffold_63 . exon 288573 288579 . - . ID=Phyra96127.5;Parent=Phyra96127;constitutive=1;ensembl_phase=2;rank=5 scaffold_63 . CDS 288740 289104 . - 0 ID=Phyra96127;Parent=Phyra96127;rank=4 scaffold_63 . exon 288740 289104 . - . ID=Phyra96127.4;Parent=Phyra96127;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_63 . CDS 289192 289439 . - 0 ID=Phyra96127;Parent=Phyra96127;rank=3 scaffold_63 . exon 289192 289439 . - . ID=Phyra96127.3;Parent=Phyra96127;constitutive=1;ensembl_phase=1;rank=3 scaffold_63 . CDS 289785 289904 . - 0 ID=Phyra96127;Parent=Phyra96127;rank=2 scaffold_63 . CDS 289926 290016 . - 0 ID=Phyra96127;Parent=Phyra96127;rank=1 scaffold_63 ensembl protein_coding_gene 299203 300182 . - . ID=Phyra51844;biotype=protein_coding;external_name=gwEuk.63.17.1;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 299203 300182 . - . ID=Phyra51844;Parent=Phyra51844;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 299203 299337 . - 0 ID=Phyra51844;Parent=Phyra51844;rank=4 scaffold_63 . exon 299203 299337 . - . ID=Phyra51844.4;Parent=Phyra51844;constitutive=1;rank=4 scaffold_63 . CDS 299400 299462 . - 0 ID=Phyra51844;Parent=Phyra51844;rank=3 scaffold_63 . exon 299400 299462 . - . ID=Phyra51844.3;Parent=Phyra51844;constitutive=1;rank=3 scaffold_63 . CDS 299540 300017 . - 0 ID=Phyra51844;Parent=Phyra51844;rank=2 scaffold_63 . exon 299540 300017 . - . ID=Phyra51844.2;Parent=Phyra51844;constitutive=1;ensembl_phase=2;rank=2 scaffold_63 . CDS 300082 300182 . - 0 ID=Phyra51844;Parent=Phyra51844;rank=1 scaffold_63 ensembl protein_coding_gene 290401 291328 . - . ID=Phyra81790;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000061;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 290401 291328 . - . ID=Phyra81790;Parent=Phyra81790;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 290401 290604 . - 0 ID=Phyra81790;Parent=Phyra81790;rank=2 scaffold_63 . exon 290401 290604 . - . ID=Phyra81790.2;Parent=Phyra81790;constitutive=1;rank=2 scaffold_63 . CDS 290663 291328 . - 0 ID=Phyra81790;Parent=Phyra81790;rank=1 scaffold_63 . exon 290663 291328 . - . ID=Phyra81790.1;Parent=Phyra81790;constitutive=1;rank=1 scaffold_63 . exon 289785 289904 . - . ID=Phyra96127.2;Parent=Phyra96127;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_63 . exon 289926 290016 . - . ID=Phyra96127.1;Parent=Phyra96127;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 ensembl protein_coding_gene 291826 293070 . + . ID=Phyra96129;biotype=protein_coding;external_name=C_scaffold_63000019;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 291826 293070 . + . ID=Phyra96129;Parent=Phyra96129;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 291826 291879 . + 0 ID=Phyra96129;Parent=Phyra96129;rank=1 scaffold_63 . exon 291826 291879 . + . ID=Phyra96129.1;Parent=Phyra96129;constitutive=1;rank=1 scaffold_63 . CDS 291961 292531 . + 0 ID=Phyra96129;Parent=Phyra96129;rank=2 scaffold_63 . exon 291961 292531 . + . ID=Phyra96129.2;Parent=Phyra96129;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_63 . CDS 292658 292752 . + 0 ID=Phyra96129;Parent=Phyra96129;rank=3 scaffold_63 . exon 292658 292752 . + . ID=Phyra96129.3;Parent=Phyra96129;constitutive=1;ensembl_phase=1;rank=3 scaffold_63 . CDS 292861 293070 . + 0 ID=Phyra96129;Parent=Phyra96129;rank=4 scaffold_63 . exon 292861 293070 . + . ID=Phyra96129.4;Parent=Phyra96129;constitutive=1;rank=4 scaffold_63 ensembl protein_coding_gene 295006 296783 . + . ID=Phyra96130;biotype=protein_coding;external_name=C_scaffold_63000020;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 295006 296783 . + . ID=Phyra96130;Parent=Phyra96130;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 295006 295063 . + 0 ID=Phyra96130;Parent=Phyra96130;rank=1 scaffold_63 . exon 295006 295063 . + . ID=Phyra96130.1;Parent=Phyra96130;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . CDS 295091 295205 . + 0 ID=Phyra96130;Parent=Phyra96130;rank=2 scaffold_63 . exon 295091 295205 . + . ID=Phyra96130.2;Parent=Phyra96130;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_63 . CDS 295301 295332 . + 0 ID=Phyra96130;Parent=Phyra96130;rank=3 scaffold_63 . exon 295301 295332 . + . ID=Phyra96130.3;Parent=Phyra96130;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_63 . CDS 295757 295858 . + 0 ID=Phyra96130;Parent=Phyra96130;rank=4 scaffold_63 . exon 295757 295858 . + . ID=Phyra96130.4;Parent=Phyra96130;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_63 . CDS 296018 296088 . + 0 ID=Phyra96130;Parent=Phyra96130;rank=5 scaffold_63 . exon 296018 296088 . + . ID=Phyra96130.5;Parent=Phyra96130;constitutive=1;ensembl_phase=1;rank=5 scaffold_63 . CDS 296154 296446 . + 0 ID=Phyra96130;Parent=Phyra96130;rank=6 scaffold_63 . exon 296154 296446 . + . ID=Phyra96130.6;Parent=Phyra96130;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_63 . CDS 296468 296783 . + 0 ID=Phyra96130;Parent=Phyra96130;rank=7 scaffold_63 . exon 296468 296783 . + . ID=Phyra96130.7;Parent=Phyra96130;constitutive=1;ensembl_phase=2;rank=7 scaffold_63 ensembl protein_coding_gene 296970 299012 . + . ID=Phyra96131;biotype=protein_coding;external_name=C_scaffold_63000021;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 296970 299012 . + . ID=Phyra96131;Parent=Phyra96131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 296970 297602 . + 0 ID=Phyra96131;Parent=Phyra96131;rank=1 scaffold_63 . exon 296970 297602 . + . ID=Phyra96131.1;Parent=Phyra96131;constitutive=1;rank=1 scaffold_63 . CDS 298002 299012 . + 0 ID=Phyra96131;Parent=Phyra96131;rank=2 scaffold_63 . exon 298002 299012 . + . ID=Phyra96131.2;Parent=Phyra96131;constitutive=1;rank=2 scaffold_63 . repeat_region 300213 300252 . ? . description=dust scaffold_63 . biological_region 301481 301482 0.999 - . logic_name=eponine scaffold_63 . biological_region 302189 302192 0.999 + . logic_name=eponine scaffold_63 . biological_region 302465 302468 0.999 + . logic_name=eponine scaffold_63 . biological_region 302676 302679 0.999 + . logic_name=eponine scaffold_63 . biological_region 302773 302777 0.999 - . logic_name=eponine scaffold_63 . biological_region 303034 303037 0.999 + . logic_name=eponine scaffold_63 . biological_region 303423 303426 0.999 - . logic_name=eponine scaffold_63 . exon 300082 300182 . - . ID=Phyra51844.1;Parent=Phyra51844;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 ensembl protein_coding_gene 305935 306669 . + . ID=Phyra71962;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_63000010;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 305935 306669 . + . ID=Phyra71962;Parent=Phyra71962;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 305935 306669 . + 0 ID=Phyra71962;Parent=Phyra71962;rank=1 scaffold_63 . exon 305935 306669 . + . ID=Phyra71962.1;Parent=Phyra71962;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 300720 301805 . + . ID=Phyra81794;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000065;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 300720 301805 . + . ID=Phyra81794;Parent=Phyra81794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 300720 301805 . + 0 ID=Phyra81794;Parent=Phyra81794;rank=1 scaffold_63 . exon 300720 301805 . + . ID=Phyra81794.1;Parent=Phyra81794;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 302083 302859 . - . ID=Phyra81795;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000066;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 302083 302859 . - . ID=Phyra81795;Parent=Phyra81795;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 302083 302859 . - 0 ID=Phyra81795;Parent=Phyra81795;rank=1 scaffold_63 . exon 302083 302859 . - . ID=Phyra81795.1;Parent=Phyra81795;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 303022 305661 . + . ID=Phyra81796;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000067;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 303022 305661 . + . ID=Phyra81796;Parent=Phyra81796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 303022 304596 . + 0 ID=Phyra81796;Parent=Phyra81796;rank=1 scaffold_63 . exon 303022 304596 . + . ID=Phyra81796.1;Parent=Phyra81796;constitutive=1;rank=1 scaffold_63 . CDS 304855 305661 . + 0 ID=Phyra81796;Parent=Phyra81796;rank=2 scaffold_63 . exon 304855 305661 . + . ID=Phyra81796.2;Parent=Phyra81796;constitutive=1;rank=2 scaffold_63 ensembl protein_coding_gene 306802 309494 . - . ID=Phyra81798;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_63000069;logic_name=jgi_phyra1 scaffold_63 ensembl transcript 306802 309494 . - . ID=Phyra81798;Parent=Phyra81798;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_63 . CDS 306802 308726 . - 0 ID=Phyra81798;Parent=Phyra81798;rank=4 scaffold_63 . exon 306802 308726 . - . ID=Phyra81798.4;Parent=Phyra81798;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_63 . CDS 308885 308923 . - 0 ID=Phyra81798;Parent=Phyra81798;rank=3 scaffold_63 . exon 308885 308923 . - . ID=Phyra81798.3;Parent=Phyra81798;constitutive=1;rank=3 scaffold_63 . CDS 309130 309141 . - 0 ID=Phyra81798;Parent=Phyra81798;rank=2 scaffold_63 . exon 309130 309141 . - . ID=Phyra81798.2;Parent=Phyra81798;constitutive=1;rank=2 scaffold_63 . CDS 309273 309494 . - 0 ID=Phyra81798;Parent=Phyra81798;rank=1 scaffold_63 . exon 309273 309494 . - . ID=Phyra81798.1;Parent=Phyra81798;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_61 1 319815 scaffold_61 . repeat_region 29 1410 . + . description=GypsyPi-1c_I-int scaffold_61 . repeat_region 1663 1877 . + . description=GypsyPi-1c_I-int scaffold_61 . repeat_region 1879 25321 . ? . description=dust scaffold_61 ensembl protein_coding_gene 906 1232 . + . ID=Phyra51644;biotype=protein_coding;external_name=gwEuk.61.33.1;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 906 1232 . + . ID=Phyra51644;Parent=Phyra51644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 906 1232 . + 0 ID=Phyra51644;Parent=Phyra51644;rank=1 scaffold_61 . exon 906 1232 . + . ID=Phyra51644.1;Parent=Phyra51644;constitutive=1;rank=1 scaffold_61 . repeat_region 1879 25321 . ? . description=dust scaffold_61 . biological_region 27048 27049 0.999 - . logic_name=eponine scaffold_61 . repeat_region 27820 29333 . + . description=Gypsy-1-I_PI-int scaffold_61 . biological_region 28089 28091 0.999 + . logic_name=eponine scaffold_61 . repeat_region 28362 28397 . ? . description=trf scaffold_61 . repeat_region 28706 28730 . ? . description=dust scaffold_61 . repeat_region 40013 40072 . ? . description=dust scaffold_61 . repeat_region 42078 42087 . ? . description=dust scaffold_61 . biological_region 49083 49084 0.999 - . logic_name=eponine scaffold_61 . biological_region 49951 49956 0.999 - . logic_name=eponine scaffold_61 ensembl protein_coding_gene 41047 41742 . + . ID=Phyra81553;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000001;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 41047 41742 . + . ID=Phyra81553;Parent=Phyra81553;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 41047 41742 . + 0 ID=Phyra81553;Parent=Phyra81553;rank=1 scaffold_61 . exon 41047 41742 . + . ID=Phyra81553.1;Parent=Phyra81553;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 43727 53360 . - . ID=Phyra96057;biotype=protein_coding;external_name=C_scaffold_61000001;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 43727 53360 . - . ID=Phyra96057;Parent=Phyra96057;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 43727 43963 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=18 scaffold_61 . exon 43727 43963 . - . ID=Phyra96057.18;Parent=Phyra96057;constitutive=1;rank=18 scaffold_61 . CDS 44012 44653 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=17 scaffold_61 . exon 44012 44653 . - . ID=Phyra96057.17;Parent=Phyra96057;constitutive=1;rank=17 scaffold_61 . CDS 44747 44903 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=16 scaffold_61 . exon 44747 44903 . - . ID=Phyra96057.16;Parent=Phyra96057;constitutive=1;ensembl_phase=2;rank=16 scaffold_61 . CDS 45033 45166 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=15 scaffold_61 . exon 45033 45166 . - . ID=Phyra96057.15;Parent=Phyra96057;constitutive=1;ensembl_end_phase=2;rank=15 scaffold_61 . CDS 46447 46690 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=14 scaffold_61 . exon 46447 46690 . - . ID=Phyra96057.14;Parent=Phyra96057;constitutive=1;ensembl_phase=2;rank=14 scaffold_61 . CDS 46943 47123 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=13 scaffold_61 . exon 46943 47123 . - . ID=Phyra96057.13;Parent=Phyra96057;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=13 scaffold_61 . CDS 47223 47677 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=12 scaffold_61 . exon 47223 47677 . - . ID=Phyra96057.12;Parent=Phyra96057;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_61 . CDS 47861 48439 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=11 scaffold_61 . exon 47861 48439 . - . ID=Phyra96057.11;Parent=Phyra96057;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_61 . CDS 48494 48865 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=10 scaffold_61 . exon 48494 48865 . - . ID=Phyra96057.10;Parent=Phyra96057;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_61 . CDS 48989 49193 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=9 scaffold_61 . exon 48989 49193 . - . ID=Phyra96057.9;Parent=Phyra96057;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_61 . CDS 49257 49436 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=8 scaffold_61 . exon 49257 49436 . - . ID=Phyra96057.8;Parent=Phyra96057;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_61 . CDS 49527 50141 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=7 scaffold_61 . exon 49527 50141 . - . ID=Phyra96057.7;Parent=Phyra96057;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_61 . CDS 50226 50328 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=6 scaffold_61 . CDS 50407 51052 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=5 scaffold_61 . CDS 51443 52725 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=4 scaffold_61 . CDS 52800 52883 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=3 scaffold_61 . CDS 52954 53103 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=2 scaffold_61 . CDS 53175 53360 . - 0 ID=Phyra96057;Parent=Phyra96057;rank=1 scaffold_61 ensembl protein_coding_gene 57046 58044 . + . ID=Phyra81556;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000004;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 57046 58044 . + . ID=Phyra81556;Parent=Phyra81556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 57046 58044 . + 0 ID=Phyra81556;Parent=Phyra81556;rank=1 scaffold_61 . exon 57046 58044 . + . ID=Phyra81556.1;Parent=Phyra81556;constitutive=1;rank=1 scaffold_61 . exon 50226 50328 . - . ID=Phyra96057.6;Parent=Phyra96057;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_61 . exon 50407 51052 . - . ID=Phyra96057.5;Parent=Phyra96057;constitutive=1;ensembl_phase=2;rank=5 scaffold_61 . exon 51443 52725 . - . ID=Phyra96057.4;Parent=Phyra96057;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_61 . exon 52800 52883 . - . ID=Phyra96057.3;Parent=Phyra96057;constitutive=1;rank=3 scaffold_61 . exon 52954 53103 . - . ID=Phyra96057.2;Parent=Phyra96057;constitutive=1;rank=2 scaffold_61 . exon 53175 53360 . - . ID=Phyra96057.1;Parent=Phyra96057;constitutive=1;rank=1 scaffold_61 . repeat_region 59951 60000 . ? . description=dust scaffold_61 . repeat_region 60199 60209 . ? . description=dust scaffold_61 . repeat_region 61131 61143 . ? . description=dust scaffold_61 . biological_region 61468 61469 0.999 - . logic_name=eponine scaffold_61 . biological_region 61523 61528 0.999 + . logic_name=eponine scaffold_61 . biological_region 61547 61547 0.999 + . logic_name=eponine scaffold_61 . repeat_region 65135 65151 . ? . description=dust scaffold_61 . biological_region 65453 65456 0.999 + . logic_name=eponine scaffold_61 . repeat_region 65558 65607 . ? . description=dust scaffold_61 . biological_region 66630 66632 0.999 - . logic_name=eponine scaffold_61 . repeat_region 68737 68773 . ? . description=trf scaffold_61 . repeat_region 69541 69549 . ? . description=dust scaffold_61 ensembl protein_coding_gene 61731 62729 . + . ID=Phyra81557;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000005;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 61731 62729 . + . ID=Phyra81557;Parent=Phyra81557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 61731 62729 . + 0 ID=Phyra81557;Parent=Phyra81557;rank=1 scaffold_61 . exon 61731 62729 . + . ID=Phyra81557.1;Parent=Phyra81557;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 71493 72533 . + . ID=Phyra81558;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000006;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 71493 72533 . + . ID=Phyra81558;Parent=Phyra81558;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 71493 72533 . + 0 ID=Phyra81558;Parent=Phyra81558;rank=1 scaffold_61 . exon 71493 72533 . + . ID=Phyra81558.1;Parent=Phyra81558;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 76172 76693 . + . ID=Phyra81559;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000007;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 76172 76693 . + . ID=Phyra81559;Parent=Phyra81559;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 76172 76693 . + 0 ID=Phyra81559;Parent=Phyra81559;rank=1 scaffold_61 . exon 76172 76693 . + . ID=Phyra81559.1;Parent=Phyra81559;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 76995 77889 . - . ID=Phyra81560;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000008;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 76995 77889 . - . ID=Phyra81560;Parent=Phyra81560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 76995 77551 . - 0 ID=Phyra81560;Parent=Phyra81560;rank=2 scaffold_61 . exon 76995 77551 . - . ID=Phyra81560.2;Parent=Phyra81560;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 . CDS 77598 77889 . - 0 ID=Phyra81560;Parent=Phyra81560;rank=1 scaffold_61 . exon 77598 77889 . - . ID=Phyra81560.1;Parent=Phyra81560;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 ensembl protein_coding_gene 78646 80581 . - . ID=Phyra81561;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000009;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 78646 80581 . - . ID=Phyra81561;Parent=Phyra81561;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 78646 78654 . - 0 ID=Phyra81561;Parent=Phyra81561;rank=5 scaffold_61 . exon 78646 78654 . - . ID=Phyra81561.5;Parent=Phyra81561;constitutive=1;rank=5 scaffold_61 . CDS 78682 78715 . - 0 ID=Phyra81561;Parent=Phyra81561;rank=4 scaffold_61 . exon 78682 78715 . - . ID=Phyra81561.4;Parent=Phyra81561;constitutive=1;ensembl_phase=2;rank=4 scaffold_61 . CDS 78803 79930 . - 0 ID=Phyra81561;Parent=Phyra81561;rank=3 scaffold_61 . exon 78803 79930 . - . ID=Phyra81561.3;Parent=Phyra81561;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_61 . CDS 80045 80048 . - 0 ID=Phyra81561;Parent=Phyra81561;rank=2 scaffold_61 . CDS 80572 80581 . - 0 ID=Phyra81561;Parent=Phyra81561;rank=1 scaffold_61 . repeat_region 81823 81831 . ? . description=dust scaffold_61 . biological_region 87693 87697 0.999 + . logic_name=eponine scaffold_61 . repeat_region 89530 89537 . ? . description=dust scaffold_61 . exon 80045 80048 . - . ID=Phyra81561.2;Parent=Phyra81561;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_61 . exon 80572 80581 . - . ID=Phyra81561.1;Parent=Phyra81561;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 ensembl protein_coding_gene 86107 87856 . - . ID=Phyra81562;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000010;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 86107 87856 . - . ID=Phyra81562;Parent=Phyra81562;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 86107 86313 . - 0 ID=Phyra81562;Parent=Phyra81562;rank=6 scaffold_61 . exon 86107 86313 . - . ID=Phyra81562.6;Parent=Phyra81562;constitutive=1;rank=6 scaffold_61 . CDS 86374 86433 . - 0 ID=Phyra81562;Parent=Phyra81562;rank=5 scaffold_61 . exon 86374 86433 . - . ID=Phyra81562.5;Parent=Phyra81562;constitutive=1;rank=5 scaffold_61 . CDS 86644 87201 . - 0 ID=Phyra81562;Parent=Phyra81562;rank=4 scaffold_61 . exon 86644 87201 . - . ID=Phyra81562.4;Parent=Phyra81562;constitutive=1;rank=4 scaffold_61 . CDS 87269 87415 . - 0 ID=Phyra81562;Parent=Phyra81562;rank=3 scaffold_61 . exon 87269 87415 . - . ID=Phyra81562.3;Parent=Phyra81562;constitutive=1;rank=3 scaffold_61 . CDS 87485 87547 . - 0 ID=Phyra81562;Parent=Phyra81562;rank=2 scaffold_61 . exon 87485 87547 . - . ID=Phyra81562.2;Parent=Phyra81562;constitutive=1;rank=2 scaffold_61 . CDS 87605 87856 . - 0 ID=Phyra81562;Parent=Phyra81562;rank=1 scaffold_61 . exon 87605 87856 . - . ID=Phyra81562.1;Parent=Phyra81562;constitutive=1;rank=1 scaffold_61 . repeat_region 94640 94672 . ? . description=trf scaffold_61 . repeat_region 95058 95093 . ? . description=trf scaffold_61 ensembl protein_coding_gene 96458 99465 . + . ID=Phyra81563;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000011;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 96458 99465 . + . ID=Phyra81563;Parent=Phyra81563;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 96458 96526 . + 0 ID=Phyra81563;Parent=Phyra81563;rank=1 scaffold_61 . exon 96458 96526 . + . ID=Phyra81563.1;Parent=Phyra81563;constitutive=1;rank=1 scaffold_61 . CDS 96594 96679 . + 0 ID=Phyra81563;Parent=Phyra81563;rank=2 scaffold_61 . exon 96594 96679 . + . ID=Phyra81563.2;Parent=Phyra81563;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_61 . CDS 96739 97389 . + 0 ID=Phyra81563;Parent=Phyra81563;rank=3 scaffold_61 . exon 96739 97389 . + . ID=Phyra81563.3;Parent=Phyra81563;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_61 . CDS 97457 97534 . + 0 ID=Phyra81563;Parent=Phyra81563;rank=4 scaffold_61 . exon 97457 97534 . + . ID=Phyra81563.4;Parent=Phyra81563;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_61 . CDS 97599 97805 . + 0 ID=Phyra81563;Parent=Phyra81563;rank=5 scaffold_61 . exon 97599 97805 . + . ID=Phyra81563.5;Parent=Phyra81563;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_61 . CDS 97968 98034 . + 0 ID=Phyra81563;Parent=Phyra81563;rank=6 scaffold_61 . exon 97968 98034 . + . ID=Phyra81563.6;Parent=Phyra81563;constitutive=1;ensembl_phase=2;rank=6 scaffold_61 . CDS 98089 98231 . + 0 ID=Phyra81563;Parent=Phyra81563;rank=7 scaffold_61 . exon 98089 98231 . + . ID=Phyra81563.7;Parent=Phyra81563;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_61 . CDS 98254 98383 . + 0 ID=Phyra81563;Parent=Phyra81563;rank=8 scaffold_61 . exon 98254 98383 . + . ID=Phyra81563.8;Parent=Phyra81563;constitutive=1;ensembl_phase=2;rank=8 scaffold_61 . CDS 98450 98480 . + 0 ID=Phyra81563;Parent=Phyra81563;rank=9 scaffold_61 . exon 98450 98480 . + . ID=Phyra81563.9;Parent=Phyra81563;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_61 . CDS 98517 98836 . + 0 ID=Phyra81563;Parent=Phyra81563;rank=10 scaffold_61 . exon 98517 98836 . + . ID=Phyra81563.10;Parent=Phyra81563;constitutive=1;ensembl_phase=1;rank=10 scaffold_61 . CDS 98915 99054 . + 0 ID=Phyra81563;Parent=Phyra81563;rank=11 scaffold_61 . exon 98915 99054 . + . ID=Phyra81563.11;Parent=Phyra81563;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_61 . CDS 99131 99208 . + 0 ID=Phyra81563;Parent=Phyra81563;rank=12 scaffold_61 . exon 99131 99208 . + . ID=Phyra81563.12;Parent=Phyra81563;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=12 scaffold_61 . CDS 99267 99465 . + 0 ID=Phyra81563;Parent=Phyra81563;rank=13 scaffold_61 . exon 99267 99465 . + . ID=Phyra81563.13;Parent=Phyra81563;constitutive=1;ensembl_phase=2;rank=13 scaffold_61 ensembl protein_coding_gene 99636 103063 . - . ID=Phyra81564;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000012;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 99636 103063 . - . ID=Phyra81564;Parent=Phyra81564;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 99636 99861 . - 0 ID=Phyra81564;Parent=Phyra81564;rank=12 scaffold_61 . exon 99636 99861 . - . ID=Phyra81564.12;Parent=Phyra81564;constitutive=1;ensembl_phase=2;rank=12 scaffold_61 . CDS 99937 100014 . - 0 ID=Phyra81564;Parent=Phyra81564;rank=11 scaffold_61 . exon 99937 100014 . - . ID=Phyra81564.11;Parent=Phyra81564;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_61 . CDS 100082 100221 . - 0 ID=Phyra81564;Parent=Phyra81564;rank=10 scaffold_61 . CDS 100281 100664 . - 0 ID=Phyra81564;Parent=Phyra81564;rank=9 scaffold_61 . CDS 100742 100877 . - 0 ID=Phyra81564;Parent=Phyra81564;rank=8 scaffold_61 . CDS 100945 101030 . - 0 ID=Phyra81564;Parent=Phyra81564;rank=7 scaffold_61 . CDS 101099 101146 . - 0 ID=Phyra81564;Parent=Phyra81564;rank=6 scaffold_61 . CDS 101672 101753 . - 0 ID=Phyra81564;Parent=Phyra81564;rank=5 scaffold_61 . CDS 101825 101902 . - 0 ID=Phyra81564;Parent=Phyra81564;rank=4 scaffold_61 . CDS 101971 102110 . - 0 ID=Phyra81564;Parent=Phyra81564;rank=3 scaffold_61 . CDS 102184 102567 . - 0 ID=Phyra81564;Parent=Phyra81564;rank=2 scaffold_61 . CDS 102833 103063 . - 0 ID=Phyra81564;Parent=Phyra81564;rank=1 scaffold_61 . biological_region 102913 102914 0.999 + . logic_name=eponine scaffold_61 . biological_region 103999 104002 0.999 + . logic_name=eponine scaffold_61 . biological_region 104042 104045 0.999 + . logic_name=eponine scaffold_61 . exon 100082 100221 . - . ID=Phyra81564.10;Parent=Phyra81564;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_61 . exon 100281 100664 . - . ID=Phyra81564.9;Parent=Phyra81564;constitutive=1;rank=9 scaffold_61 . exon 100742 100877 . - . ID=Phyra81564.8;Parent=Phyra81564;constitutive=1;ensembl_phase=2;rank=8 scaffold_61 . exon 100945 101030 . - . ID=Phyra81564.7;Parent=Phyra81564;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_61 . exon 101099 101146 . - . ID=Phyra81564.6;Parent=Phyra81564;constitutive=1;rank=6 scaffold_61 . exon 101672 101753 . - . ID=Phyra81564.5;Parent=Phyra81564;constitutive=1;ensembl_phase=2;rank=5 scaffold_61 . exon 101825 101902 . - . ID=Phyra81564.4;Parent=Phyra81564;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_61 . exon 101971 102110 . - . ID=Phyra81564.3;Parent=Phyra81564;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_61 . exon 102184 102567 . - . ID=Phyra81564.2;Parent=Phyra81564;constitutive=1;rank=2 scaffold_61 . exon 102833 103063 . - . ID=Phyra81564.1;Parent=Phyra81564;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 106271 108565 . + . ID=Phyra81566;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000014;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 106271 108565 . + . ID=Phyra81566;Parent=Phyra81566;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 106271 106326 . + 0 ID=Phyra81566;Parent=Phyra81566;rank=1 scaffold_61 . exon 106271 106326 . + . ID=Phyra81566.1;Parent=Phyra81566;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 . CDS 106803 106962 . + 0 ID=Phyra81566;Parent=Phyra81566;rank=2 scaffold_61 . exon 106803 106962 . + . ID=Phyra81566.2;Parent=Phyra81566;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 . CDS 107026 107207 . + 0 ID=Phyra81566;Parent=Phyra81566;rank=3 scaffold_61 . exon 107026 107207 . + . ID=Phyra81566.3;Parent=Phyra81566;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_61 . CDS 107398 107485 . + 0 ID=Phyra81566;Parent=Phyra81566;rank=4 scaffold_61 . exon 107398 107485 . + . ID=Phyra81566.4;Parent=Phyra81566;constitutive=1;ensembl_phase=2;rank=4 scaffold_61 . CDS 107549 108565 . + 0 ID=Phyra81566;Parent=Phyra81566;rank=5 scaffold_61 . exon 107549 108565 . + . ID=Phyra81566.5;Parent=Phyra81566;constitutive=1;rank=5 scaffold_61 ensembl protein_coding_gene 109019 110073 . + . ID=Phyra81567;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000015;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 109019 110073 . + . ID=Phyra81567;Parent=Phyra81567;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 109019 109085 . + 0 ID=Phyra81567;Parent=Phyra81567;rank=1 scaffold_61 . exon 109019 109085 . + . ID=Phyra81567.1;Parent=Phyra81567;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . CDS 109157 110073 . + 0 ID=Phyra81567;Parent=Phyra81567;rank=2 scaffold_61 . exon 109157 110073 . + . ID=Phyra81567.2;Parent=Phyra81567;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 ensembl protein_coding_gene 104299 105933 . + . ID=Phyra96060;biotype=protein_coding;external_name=C_scaffold_61000004;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 104299 105933 . + . ID=Phyra96060;Parent=Phyra96060;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . exon 104299 104646 . + . ID=Phyra96060.1;Parent=Phyra96060;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_61 . CDS 104300 104646 . + 0 ID=Phyra96060;Parent=Phyra96060;rank=1 scaffold_61 . CDS 104717 104773 . + 0 ID=Phyra96060;Parent=Phyra96060;rank=2 scaffold_61 . exon 104717 104773 . + . ID=Phyra96060.2;Parent=Phyra96060;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_61 . CDS 104853 105494 . + 0 ID=Phyra96060;Parent=Phyra96060;rank=3 scaffold_61 . exon 104853 105494 . + . ID=Phyra96060.3;Parent=Phyra96060;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_61 . CDS 105546 105933 . + 0 ID=Phyra96060;Parent=Phyra96060;rank=4 scaffold_61 . exon 105546 105933 . + . ID=Phyra96060.4;Parent=Phyra96060;constitutive=1;ensembl_phase=2;rank=4 scaffold_61 . repeat_region 117510 117517 . ? . description=dust scaffold_61 ensembl protein_coding_gene 110260 110949 . - . ID=Phyra51635;biotype=protein_coding;external_name=gwEuk.61.24.1;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 110260 110949 . - . ID=Phyra51635;Parent=Phyra51635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 110260 110949 . - 0 ID=Phyra51635;Parent=Phyra51635;rank=1 scaffold_61 . exon 110260 110949 . - . ID=Phyra51635.1;Parent=Phyra51635;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 115803 116942 . - . ID=Phyra71934;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_61000001;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 115803 116942 . - . ID=Phyra71934;Parent=Phyra71934;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 115803 116942 . - 0 ID=Phyra71934;Parent=Phyra71934;rank=1 scaffold_61 . exon 115803 116942 . - . ID=Phyra71934.1;Parent=Phyra71934;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 111239 112489 . - . ID=Phyra81569;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000017;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 111239 112489 . - . ID=Phyra81569;Parent=Phyra81569;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 111239 112489 . - 0 ID=Phyra81569;Parent=Phyra81569;rank=1 scaffold_61 . exon 111239 112489 . - . ID=Phyra81569.1;Parent=Phyra81569;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 118116 119753 . + . ID=Phyra81571;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000019;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 118116 119753 . + . ID=Phyra81571;Parent=Phyra81571;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 118116 119753 . + 0 ID=Phyra81571;Parent=Phyra81571;rank=1 scaffold_61 . exon 118116 119753 . + . ID=Phyra81571.1;Parent=Phyra81571;constitutive=1;rank=1 scaffold_61 . biological_region 120125 120127 0.999 - . logic_name=eponine scaffold_61 . biological_region 121424 121426 0.999 + . logic_name=eponine scaffold_61 . biological_region 121716 121718 0.999 + . logic_name=eponine scaffold_61 ensembl protein_coding_gene 129376 132269 . + . ID=Phyra51649;biotype=protein_coding;external_name=gwEuk.61.38.1;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 129376 132269 . + . ID=Phyra51649;Parent=Phyra51649;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 129376 129671 . + 0 ID=Phyra51649;Parent=Phyra51649;rank=1 scaffold_61 . exon 129376 129671 . + . ID=Phyra51649.1;Parent=Phyra51649;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 . CDS 129741 129915 . + 0 ID=Phyra51649;Parent=Phyra51649;rank=2 scaffold_61 . exon 129741 129915 . + . ID=Phyra51649.2;Parent=Phyra51649;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 . CDS 129988 130215 . + 0 ID=Phyra51649;Parent=Phyra51649;rank=3 scaffold_61 . CDS 130360 130458 . + 0 ID=Phyra51649;Parent=Phyra51649;rank=4 scaffold_61 . CDS 130538 130675 . + 0 ID=Phyra51649;Parent=Phyra51649;rank=5 scaffold_61 . CDS 130763 131807 . + 0 ID=Phyra51649;Parent=Phyra51649;rank=6 scaffold_61 . CDS 131873 132021 . + 0 ID=Phyra51649;Parent=Phyra51649;rank=7 scaffold_61 . CDS 132101 132150 . + 0 ID=Phyra51649;Parent=Phyra51649;rank=8 scaffold_61 . CDS 132212 132269 . + 0 ID=Phyra51649;Parent=Phyra51649;rank=9 scaffold_61 ensembl protein_coding_gene 119989 122382 . - . ID=Phyra71935;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_61000002;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 119989 122382 . - . ID=Phyra71935;Parent=Phyra71935;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 119989 120105 . - 0 ID=Phyra71935;Parent=Phyra71935;rank=2 scaffold_61 . exon 119989 120105 . - . ID=Phyra71935.2;Parent=Phyra71935;constitutive=1;rank=2 scaffold_61 . CDS 120130 122382 . - 0 ID=Phyra71935;Parent=Phyra71935;rank=1 scaffold_61 . exon 120130 122382 . - . ID=Phyra71935.1;Parent=Phyra71935;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 123354 125429 . - . ID=Phyra81573;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000021;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 123354 125429 . - . ID=Phyra81573;Parent=Phyra81573;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 123354 125429 . - 0 ID=Phyra81573;Parent=Phyra81573;rank=1 scaffold_61 . exon 123354 125429 . - . ID=Phyra81573.1;Parent=Phyra81573;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 127815 129210 . - . ID=Phyra81574;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000022;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 127815 129210 . - . ID=Phyra81574;Parent=Phyra81574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 127815 127995 . - 0 ID=Phyra81574;Parent=Phyra81574;rank=5 scaffold_61 . exon 127815 127995 . - . ID=Phyra81574.5;Parent=Phyra81574;constitutive=1;ensembl_phase=2;rank=5 scaffold_61 . CDS 128081 128158 . - 0 ID=Phyra81574;Parent=Phyra81574;rank=4 scaffold_61 . exon 128081 128158 . - . ID=Phyra81574.4;Parent=Phyra81574;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_61 . CDS 128238 128377 . - 0 ID=Phyra81574;Parent=Phyra81574;rank=3 scaffold_61 . exon 128238 128377 . - . ID=Phyra81574.3;Parent=Phyra81574;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_61 . CDS 128445 129038 . - 0 ID=Phyra81574;Parent=Phyra81574;rank=2 scaffold_61 . exon 128445 129038 . - . ID=Phyra81574.2;Parent=Phyra81574;constitutive=1;rank=2 scaffold_61 . CDS 129103 129210 . - 0 ID=Phyra81574;Parent=Phyra81574;rank=1 scaffold_61 . exon 129103 129210 . - . ID=Phyra81574.1;Parent=Phyra81574;constitutive=1;rank=1 scaffold_61 . exon 129988 130215 . + . ID=Phyra51649.3;Parent=Phyra51649;constitutive=1;rank=3 scaffold_61 . exon 130360 130458 . + . ID=Phyra51649.4;Parent=Phyra51649;constitutive=1;rank=4 scaffold_61 . exon 130538 130675 . + . ID=Phyra51649.5;Parent=Phyra51649;constitutive=1;rank=5 scaffold_61 . exon 130763 131807 . + . ID=Phyra51649.6;Parent=Phyra51649;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_61 . exon 131873 132021 . + . ID=Phyra51649.7;Parent=Phyra51649;constitutive=1;ensembl_phase=1;rank=7 scaffold_61 . exon 132101 132150 . + . ID=Phyra51649.8;Parent=Phyra51649;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_61 . exon 132212 132269 . + . ID=Phyra51649.9;Parent=Phyra51649;constitutive=1;ensembl_phase=2;rank=9 scaffold_61 ensembl protein_coding_gene 132457 135107 . - . ID=Phyra81577;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000025;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 132457 135107 . - . ID=Phyra81577;Parent=Phyra81577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 132457 134663 . - 0 ID=Phyra81577;Parent=Phyra81577;rank=2 scaffold_61 . exon 132457 134663 . - . ID=Phyra81577.2;Parent=Phyra81577;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_61 . CDS 134787 135107 . - 0 ID=Phyra81577;Parent=Phyra81577;rank=1 scaffold_61 . exon 134787 135107 . - . ID=Phyra81577.1;Parent=Phyra81577;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 136624 140305 . + . ID=Phyra81578;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000026;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 136624 140305 . + . ID=Phyra81578;Parent=Phyra81578;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 136624 138763 . + 0 ID=Phyra81578;Parent=Phyra81578;rank=1 scaffold_61 . exon 136624 138763 . + . ID=Phyra81578.1;Parent=Phyra81578;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . CDS 138814 138977 . + 0 ID=Phyra81578;Parent=Phyra81578;rank=2 scaffold_61 . exon 138814 138977 . + . ID=Phyra81578.2;Parent=Phyra81578;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 . CDS 139043 139128 . + 0 ID=Phyra81578;Parent=Phyra81578;rank=3 scaffold_61 . exon 139043 139128 . + . ID=Phyra81578.3;Parent=Phyra81578;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_61 . CDS 139190 139697 . + 0 ID=Phyra81578;Parent=Phyra81578;rank=4 scaffold_61 . exon 139190 139697 . + . ID=Phyra81578.4;Parent=Phyra81578;constitutive=1;ensembl_phase=2;rank=4 scaffold_61 . CDS 139760 139899 . + 0 ID=Phyra81578;Parent=Phyra81578;rank=5 scaffold_61 . exon 139760 139899 . + . ID=Phyra81578.5;Parent=Phyra81578;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_61 . CDS 139955 140032 . + 0 ID=Phyra81578;Parent=Phyra81578;rank=6 scaffold_61 . CDS 140095 140305 . + 0 ID=Phyra81578;Parent=Phyra81578;rank=7 scaffold_61 . biological_region 142116 142119 0.999 - . logic_name=eponine scaffold_61 . biological_region 142442 142445 0.999 - . logic_name=eponine scaffold_61 . biological_region 143827 143834 0.999 - . logic_name=eponine scaffold_61 . biological_region 147825 147831 0.999 + . logic_name=eponine scaffold_61 . biological_region 147843 147847 0.999 - . logic_name=eponine scaffold_61 . biological_region 147862 147862 0.999 - . logic_name=eponine scaffold_61 . biological_region 147878 147886 0.999 - . logic_name=eponine scaffold_61 . biological_region 147938 147939 0.999 + . logic_name=eponine scaffold_61 . biological_region 148298 148299 0.999 - . logic_name=eponine scaffold_61 . biological_region 148413 148419 0.999 + . logic_name=eponine scaffold_61 . exon 139955 140032 . + . ID=Phyra81578.6;Parent=Phyra81578;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_61 . exon 140095 140305 . + . ID=Phyra81578.7;Parent=Phyra81578;constitutive=1;ensembl_phase=2;rank=7 scaffold_61 ensembl protein_coding_gene 141537 142974 . + . ID=Phyra81580;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000028;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 141537 142974 . + . ID=Phyra81580;Parent=Phyra81580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 141537 141951 . + 0 ID=Phyra81580;Parent=Phyra81580;rank=1 scaffold_61 . exon 141537 141951 . + . ID=Phyra81580.1;Parent=Phyra81580;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . CDS 142013 142203 . + 0 ID=Phyra81580;Parent=Phyra81580;rank=2 scaffold_61 . exon 142013 142203 . + . ID=Phyra81580.2;Parent=Phyra81580;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 . CDS 142260 142390 . + 0 ID=Phyra81580;Parent=Phyra81580;rank=3 scaffold_61 . exon 142260 142390 . + . ID=Phyra81580.3;Parent=Phyra81580;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_61 . CDS 142454 142583 . + 0 ID=Phyra81580;Parent=Phyra81580;rank=4 scaffold_61 . exon 142454 142583 . + . ID=Phyra81580.4;Parent=Phyra81580;constitutive=1;ensembl_phase=2;rank=4 scaffold_61 . CDS 142648 142974 . + 0 ID=Phyra81580;Parent=Phyra81580;rank=5 scaffold_61 . exon 142648 142974 . + . ID=Phyra81580.5;Parent=Phyra81580;constitutive=1;rank=5 scaffold_61 ensembl protein_coding_gene 145412 145930 . + . ID=Phyra81581;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000029;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 145412 145930 . + . ID=Phyra81581;Parent=Phyra81581;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 145412 145930 . + 0 ID=Phyra81581;Parent=Phyra81581;rank=1 scaffold_61 . exon 145412 145930 . + . ID=Phyra81581.1;Parent=Phyra81581;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 148052 148900 . + . ID=Phyra81582;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000030;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 148052 148900 . + . ID=Phyra81582;Parent=Phyra81582;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 148052 148900 . + 0 ID=Phyra81582;Parent=Phyra81582;rank=1 scaffold_61 . exon 148052 148900 . + . ID=Phyra81582.1;Parent=Phyra81582;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 149024 151419 . - . ID=Phyra81583;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000031;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 149024 151419 . - . ID=Phyra81583;Parent=Phyra81583;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 149024 150311 . - 0 ID=Phyra81583;Parent=Phyra81583;rank=3 scaffold_61 . exon 149024 150311 . - . ID=Phyra81583.3;Parent=Phyra81583;constitutive=1;ensembl_phase=2;rank=3 scaffold_61 . CDS 150388 150850 . - 0 ID=Phyra81583;Parent=Phyra81583;rank=2 scaffold_61 . CDS 150909 151419 . - 0 ID=Phyra81583;Parent=Phyra81583;rank=1 scaffold_61 ensembl protein_coding_gene 140424 141366 . - . ID=Phyra96066;biotype=protein_coding;external_name=C_scaffold_61000010;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 140424 141366 . - . ID=Phyra96066;Parent=Phyra96066;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 140424 140719 . - 0 ID=Phyra96066;Parent=Phyra96066;rank=4 scaffold_61 . exon 140424 140719 . - . ID=Phyra96066.4;Parent=Phyra96066;constitutive=1;ensembl_phase=1;rank=4 scaffold_61 . CDS 140794 140994 . - 0 ID=Phyra96066;Parent=Phyra96066;rank=3 scaffold_61 . exon 140794 140994 . - . ID=Phyra96066.3;Parent=Phyra96066;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_61 . CDS 141031 141240 . - 0 ID=Phyra96066;Parent=Phyra96066;rank=2 scaffold_61 . exon 141031 141240 . - . ID=Phyra96066.2;Parent=Phyra96066;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_61 . CDS 141312 141366 . - 0 ID=Phyra96066;Parent=Phyra96066;rank=1 scaffold_61 . exon 141312 141366 . - . ID=Phyra96066.1;Parent=Phyra96066;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . repeat_region 152350 159908 . ? . description=dust scaffold_61 . repeat_region 159909 166500 . ? . description=dust scaffold_61 . exon 150388 150850 . - . ID=Phyra81583.2;Parent=Phyra81583;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_61 . exon 150909 151419 . - . ID=Phyra81583.1;Parent=Phyra81583;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . biological_region 167189 167195 0.999 + . logic_name=eponine scaffold_61 . repeat_region 169158 169189 . ? . description=trf scaffold_61 ensembl protein_coding_gene 166969 168031 . - . ID=Phyra81584;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000032;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 166969 168031 . - . ID=Phyra81584;Parent=Phyra81584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 166969 167469 . - 0 ID=Phyra81584;Parent=Phyra81584;rank=2 scaffold_61 . exon 166969 167469 . - . ID=Phyra81584.2;Parent=Phyra81584;constitutive=1;rank=2 scaffold_61 . CDS 167510 168031 . - 0 ID=Phyra81584;Parent=Phyra81584;rank=1 scaffold_61 . exon 167510 168031 . - . ID=Phyra81584.1;Parent=Phyra81584;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 169908 171323 . - . ID=Phyra81585;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000033;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 169908 171323 . - . ID=Phyra81585;Parent=Phyra81585;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 169908 170384 . - 0 ID=Phyra81585;Parent=Phyra81585;rank=4 scaffold_61 . exon 169908 170384 . - . ID=Phyra81585.4;Parent=Phyra81585;constitutive=1;rank=4 scaffold_61 . CDS 170473 170742 . - 0 ID=Phyra81585;Parent=Phyra81585;rank=3 scaffold_61 . CDS 170822 171042 . - 0 ID=Phyra81585;Parent=Phyra81585;rank=2 scaffold_61 . CDS 171182 171323 . - 0 ID=Phyra81585;Parent=Phyra81585;rank=1 scaffold_61 . exon 170473 170742 . - . ID=Phyra81585.3;Parent=Phyra81585;constitutive=1;rank=3 scaffold_61 . exon 170822 171042 . - . ID=Phyra81585.2;Parent=Phyra81585;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 . exon 171182 171323 . - . ID=Phyra81585.1;Parent=Phyra81585;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 ensembl protein_coding_gene 171520 172795 . - . ID=Phyra81586;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000034;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 171520 172795 . - . ID=Phyra81586;Parent=Phyra81586;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 171520 171873 . - 0 ID=Phyra81586;Parent=Phyra81586;rank=5 scaffold_61 . exon 171520 171873 . - . ID=Phyra81586.5;Parent=Phyra81586;constitutive=1;rank=5 scaffold_61 . CDS 171918 172133 . - 0 ID=Phyra81586;Parent=Phyra81586;rank=4 scaffold_61 . exon 171918 172133 . - . ID=Phyra81586.4;Parent=Phyra81586;constitutive=1;rank=4 scaffold_61 . CDS 172198 172266 . - 0 ID=Phyra81586;Parent=Phyra81586;rank=3 scaffold_61 . exon 172198 172266 . - . ID=Phyra81586.3;Parent=Phyra81586;constitutive=1;rank=3 scaffold_61 . CDS 172334 172557 . - 0 ID=Phyra81586;Parent=Phyra81586;rank=2 scaffold_61 . exon 172334 172557 . - . ID=Phyra81586.2;Parent=Phyra81586;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 . CDS 172702 172795 . - 0 ID=Phyra81586;Parent=Phyra81586;rank=1 scaffold_61 . exon 172702 172795 . - . ID=Phyra81586.1;Parent=Phyra81586;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 ensembl protein_coding_gene 173424 175302 . + . ID=Phyra81587;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000035;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 173424 175302 . + . ID=Phyra81587;Parent=Phyra81587;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 173424 174224 . + 0 ID=Phyra81587;Parent=Phyra81587;rank=1 scaffold_61 . exon 173424 174224 . + . ID=Phyra81587.1;Parent=Phyra81587;constitutive=1;rank=1 scaffold_61 . CDS 174283 175302 . + 0 ID=Phyra81587;Parent=Phyra81587;rank=2 scaffold_61 . exon 174283 175302 . + . ID=Phyra81587.2;Parent=Phyra81587;constitutive=1;rank=2 scaffold_61 ensembl protein_coding_gene 175969 177659 . + . ID=Phyra81588;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000036;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 175969 177659 . + . ID=Phyra81588;Parent=Phyra81588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 175969 176691 . + 0 ID=Phyra81588;Parent=Phyra81588;rank=1 scaffold_61 . exon 175969 176691 . + . ID=Phyra81588.1;Parent=Phyra81588;constitutive=1;rank=1 scaffold_61 . CDS 176756 177082 . + 0 ID=Phyra81588;Parent=Phyra81588;rank=2 scaffold_61 . exon 176756 177082 . + . ID=Phyra81588.2;Parent=Phyra81588;constitutive=1;rank=2 scaffold_61 . CDS 177153 177659 . + 0 ID=Phyra81588;Parent=Phyra81588;rank=3 scaffold_61 . exon 177153 177659 . + . ID=Phyra81588.3;Parent=Phyra81588;constitutive=1;rank=3 scaffold_61 . repeat_region 182960 183231 . ? . description=dust scaffold_61 . repeat_region 185351 189647 . ? . description=dust scaffold_61 . repeat_region 189660 189681 . ? . description=dust scaffold_61 ensembl protein_coding_gene 180805 181978 . - . ID=Phyra81589;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000037;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 180805 181978 . - . ID=Phyra81589;Parent=Phyra81589;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 180805 181576 . - 0 ID=Phyra81589;Parent=Phyra81589;rank=2 scaffold_61 . exon 180805 181576 . - . ID=Phyra81589.2;Parent=Phyra81589;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 . CDS 181899 181978 . - 0 ID=Phyra81589;Parent=Phyra81589;rank=1 scaffold_61 . exon 181899 181978 . - . ID=Phyra81589.1;Parent=Phyra81589;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 ensembl protein_coding_gene 182101 184035 . - . ID=Phyra81590;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000038;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 182101 184035 . - . ID=Phyra81590;Parent=Phyra81590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 182101 182727 . - 0 ID=Phyra81590;Parent=Phyra81590;rank=3 scaffold_61 . exon 182101 182727 . - . ID=Phyra81590.3;Parent=Phyra81590;constitutive=1;rank=3 scaffold_61 . CDS 183256 183856 . - 0 ID=Phyra81590;Parent=Phyra81590;rank=2 scaffold_61 . exon 183256 183856 . - . ID=Phyra81590.2;Parent=Phyra81590;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 . CDS 183983 184035 . - 0 ID=Phyra81590;Parent=Phyra81590;rank=1 scaffold_61 . exon 183983 184035 . - . ID=Phyra81590.1;Parent=Phyra81590;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 . repeat_region 200985 201002 . ? . description=dust scaffold_61 . repeat_region 203921 203929 . ? . description=dust scaffold_61 . repeat_region 204888 204902 . ? . description=dust scaffold_61 . biological_region 205068 205070 0.999 + . logic_name=eponine scaffold_61 . repeat_region 207187 207236 . ? . description=dust scaffold_61 . biological_region 207862 207869 0.999 - . logic_name=eponine scaffold_61 . biological_region 208233 208237 0.999 + . logic_name=eponine scaffold_61 . biological_region 209074 209076 0.999 + . logic_name=eponine scaffold_61 . repeat_region 209832 209843 . ? . description=dust scaffold_61 . biological_region 209889 209893 0.999 + . logic_name=eponine scaffold_61 ensembl protein_coding_gene 205055 205740 . + . ID=Phyra81591;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000039;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 205055 205740 . + . ID=Phyra81591;Parent=Phyra81591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 205055 205216 . + 0 ID=Phyra81591;Parent=Phyra81591;rank=1 scaffold_61 . exon 205055 205216 . + . ID=Phyra81591.1;Parent=Phyra81591;constitutive=1;rank=1 scaffold_61 . CDS 205243 205488 . + 0 ID=Phyra81591;Parent=Phyra81591;rank=2 scaffold_61 . exon 205243 205488 . + . ID=Phyra81591.2;Parent=Phyra81591;constitutive=1;rank=2 scaffold_61 . CDS 205564 205740 . + 0 ID=Phyra81591;Parent=Phyra81591;rank=3 scaffold_61 . exon 205564 205740 . + . ID=Phyra81591.3;Parent=Phyra81591;constitutive=1;rank=3 scaffold_61 ensembl protein_coding_gene 211666 212447 . + . ID=Phyra81592;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000040;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 211666 212447 . + . ID=Phyra81592;Parent=Phyra81592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 211666 212323 . + 0 ID=Phyra81592;Parent=Phyra81592;rank=1 scaffold_61 . exon 211666 212323 . + . ID=Phyra81592.1;Parent=Phyra81592;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . CDS 212416 212447 . + 0 ID=Phyra81592;Parent=Phyra81592;rank=2 scaffold_61 . exon 212416 212447 . + . ID=Phyra81592.2;Parent=Phyra81592;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 ensembl protein_coding_gene 216665 217972 . - . ID=Phyra81593;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000041;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 216665 217972 . - . ID=Phyra81593;Parent=Phyra81593;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 216665 216966 . - 0 ID=Phyra81593;Parent=Phyra81593;rank=4 scaffold_61 . exon 216665 216966 . - . ID=Phyra81593.4;Parent=Phyra81593;constitutive=1;ensembl_phase=1;rank=4 scaffold_61 . CDS 217004 217261 . - 0 ID=Phyra81593;Parent=Phyra81593;rank=3 scaffold_61 . exon 217004 217261 . - . ID=Phyra81593.3;Parent=Phyra81593;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_61 . CDS 217759 217810 . - 0 ID=Phyra81593;Parent=Phyra81593;rank=2 scaffold_61 . exon 217759 217810 . - . ID=Phyra81593.2;Parent=Phyra81593;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_61 . CDS 217910 217972 . - 0 ID=Phyra81593;Parent=Phyra81593;rank=1 scaffold_61 . exon 217910 217972 . - . ID=Phyra81593.1;Parent=Phyra81593;constitutive=1;rank=1 scaffold_61 . repeat_region 219919 219944 . ? . description=trf scaffold_61 . repeat_region 221785 221792 . ? . description=dust scaffold_61 . repeat_region 223364 225261 . ? . description=dust scaffold_61 . repeat_region 225309 225341 . ? . description=trf scaffold_61 . repeat_region 226378 227834 . ? . description=dust scaffold_61 . biological_region 228920 228924 0.999 + . logic_name=eponine scaffold_61 ensembl protein_coding_gene 222377 223144 . - . ID=Phyra81594;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000042;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 222377 223144 . - . ID=Phyra81594;Parent=Phyra81594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 222377 223144 . - 0 ID=Phyra81594;Parent=Phyra81594;rank=1 scaffold_61 . exon 222377 223144 . - . ID=Phyra81594.1;Parent=Phyra81594;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 228765 229880 . - . ID=Phyra81595;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000043;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 228765 229880 . - . ID=Phyra81595;Parent=Phyra81595;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 228765 229880 . - 0 ID=Phyra81595;Parent=Phyra81595;rank=1 scaffold_61 . exon 228765 229880 . - . ID=Phyra81595.1;Parent=Phyra81595;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 233634 234547 . + . ID=Phyra81596;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000044;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 233634 234547 . + . ID=Phyra81596;Parent=Phyra81596;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 233634 233690 . + 0 ID=Phyra81596;Parent=Phyra81596;rank=1 scaffold_61 . exon 233634 233690 . + . ID=Phyra81596.1;Parent=Phyra81596;constitutive=1;rank=1 scaffold_61 . CDS 233921 234547 . + 0 ID=Phyra81596;Parent=Phyra81596;rank=2 scaffold_61 . exon 233921 234547 . + . ID=Phyra81596.2;Parent=Phyra81596;constitutive=1;rank=2 scaffold_61 ensembl protein_coding_gene 234670 235843 . + . ID=Phyra81597;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000045;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 234670 235843 . + . ID=Phyra81597;Parent=Phyra81597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 234670 234749 . + 0 ID=Phyra81597;Parent=Phyra81597;rank=1 scaffold_61 . exon 234670 234749 . + . ID=Phyra81597.1;Parent=Phyra81597;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 . CDS 235072 235843 . + 0 ID=Phyra81597;Parent=Phyra81597;rank=2 scaffold_61 . exon 235072 235843 . + . ID=Phyra81597.2;Parent=Phyra81597;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 ensembl protein_coding_gene 236288 237403 . - . ID=Phyra81598;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000046;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 236288 237403 . - . ID=Phyra81598;Parent=Phyra81598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 236288 237403 . - 0 ID=Phyra81598;Parent=Phyra81598;rank=1 scaffold_61 . exon 236288 237403 . - . ID=Phyra81598.1;Parent=Phyra81598;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 238557 239147 . - . ID=Phyra81599;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000047;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 238557 239147 . - . ID=Phyra81599;Parent=Phyra81599;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 238557 238565 . - 0 ID=Phyra81599;Parent=Phyra81599;rank=2 scaffold_61 . exon 238557 238565 . - . ID=Phyra81599.2;Parent=Phyra81599;constitutive=1;rank=2 scaffold_61 . CDS 238599 239147 . - 0 ID=Phyra81599;Parent=Phyra81599;rank=1 scaffold_61 . exon 238599 239147 . - . ID=Phyra81599.1;Parent=Phyra81599;constitutive=1;rank=1 scaffold_61 . biological_region 243124 243125 0.999 + . logic_name=eponine scaffold_61 . biological_region 243180 243183 0.999 - . logic_name=eponine scaffold_61 . biological_region 244331 244334 0.999 - . logic_name=eponine scaffold_61 . repeat_region 247095 247102 . ? . description=dust scaffold_61 . repeat_region 247919 247952 . ? . description=trf scaffold_61 ensembl protein_coding_gene 241292 246116 . - . ID=Phyra81600;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000048;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 241292 246116 . - . ID=Phyra81600;Parent=Phyra81600;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 241292 242065 . - 0 ID=Phyra81600;Parent=Phyra81600;rank=9 scaffold_61 . exon 241292 242065 . - . ID=Phyra81600.9;Parent=Phyra81600;constitutive=1;rank=9 scaffold_61 . CDS 242135 242341 . - 0 ID=Phyra81600;Parent=Phyra81600;rank=8 scaffold_61 . exon 242135 242341 . - . ID=Phyra81600.8;Parent=Phyra81600;constitutive=1;rank=8 scaffold_61 . CDS 242416 242683 . - 0 ID=Phyra81600;Parent=Phyra81600;rank=7 scaffold_61 . exon 242416 242683 . - . ID=Phyra81600.7;Parent=Phyra81600;constitutive=1;ensembl_phase=2;rank=7 scaffold_61 . CDS 243016 243668 . - 0 ID=Phyra81600;Parent=Phyra81600;rank=6 scaffold_61 . exon 243016 243668 . - . ID=Phyra81600.6;Parent=Phyra81600;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_61 . CDS 243758 244327 . - 0 ID=Phyra81600;Parent=Phyra81600;rank=5 scaffold_61 . exon 243758 244327 . - . ID=Phyra81600.5;Parent=Phyra81600;constitutive=1;rank=5 scaffold_61 . CDS 244467 244470 . - 0 ID=Phyra81600;Parent=Phyra81600;rank=4 scaffold_61 . exon 244467 244470 . - . ID=Phyra81600.4;Parent=Phyra81600;constitutive=1;ensembl_phase=2;rank=4 scaffold_61 . CDS 244553 245253 . - 0 ID=Phyra81600;Parent=Phyra81600;rank=3 scaffold_61 . exon 244553 245253 . - . ID=Phyra81600.3;Parent=Phyra81600;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_61 . CDS 245316 245522 . - 0 ID=Phyra81600;Parent=Phyra81600;rank=2 scaffold_61 . exon 245316 245522 . - . ID=Phyra81600.2;Parent=Phyra81600;constitutive=1;rank=2 scaffold_61 . CDS 245589 246116 . - 0 ID=Phyra81600;Parent=Phyra81600;rank=1 scaffold_61 . exon 245589 246116 . - . ID=Phyra81600.1;Parent=Phyra81600;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 247260 248293 . + . ID=Phyra81601;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000049;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 247260 248293 . + . ID=Phyra81601;Parent=Phyra81601;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 247260 247439 . + 0 ID=Phyra81601;Parent=Phyra81601;rank=1 scaffold_61 . exon 247260 247439 . + . ID=Phyra81601.1;Parent=Phyra81601;constitutive=1;rank=1 scaffold_61 . CDS 247542 247605 . + 0 ID=Phyra81601;Parent=Phyra81601;rank=2 scaffold_61 . exon 247542 247605 . + . ID=Phyra81601.2;Parent=Phyra81601;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_61 . CDS 247662 248293 . + 0 ID=Phyra81601;Parent=Phyra81601;rank=3 scaffold_61 . exon 247662 248293 . + . ID=Phyra81601.3;Parent=Phyra81601;constitutive=1;ensembl_phase=1;rank=3 scaffold_61 ensembl protein_coding_gene 249125 250560 . - . ID=Phyra81602;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000050;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 249125 250560 . - . ID=Phyra81602;Parent=Phyra81602;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 249125 249913 . - 0 ID=Phyra81602;Parent=Phyra81602;rank=3 scaffold_61 . exon 249125 249913 . - . ID=Phyra81602.3;Parent=Phyra81602;constitutive=1;rank=3 scaffold_61 . CDS 249991 250200 . - 0 ID=Phyra81602;Parent=Phyra81602;rank=2 scaffold_61 . CDS 250384 250560 . - 0 ID=Phyra81602;Parent=Phyra81602;rank=1 scaffold_61 . exon 249991 250200 . - . ID=Phyra81602.2;Parent=Phyra81602;constitutive=1;rank=2 scaffold_61 . exon 250384 250560 . - . ID=Phyra81602.1;Parent=Phyra81602;constitutive=1;rank=1 scaffold_61 . repeat_region 264140 264147 . ? . description=dust scaffold_61 . repeat_region 264167 264182 . ? . description=dust scaffold_61 . repeat_region 264204 264211 . ? . description=dust scaffold_61 . repeat_region 264712 264750 . ? . description=trf scaffold_61 . repeat_region 265164 265173 . ? . description=dust scaffold_61 ensembl protein_coding_gene 260065 261524 . + . ID=Phyra71937;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_61000004;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 260065 261524 . + . ID=Phyra71937;Parent=Phyra71937;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 260065 260089 . + 0 ID=Phyra71937;Parent=Phyra71937;rank=1 scaffold_61 . exon 260065 260089 . + . ID=Phyra71937.1;Parent=Phyra71937;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . CDS 260198 260326 . + 0 ID=Phyra71937;Parent=Phyra71937;rank=2 scaffold_61 . exon 260198 260326 . + . ID=Phyra71937.2;Parent=Phyra71937;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_61 . CDS 260458 261524 . + 0 ID=Phyra71937;Parent=Phyra71937;rank=3 scaffold_61 . exon 260458 261524 . + . ID=Phyra71937.3;Parent=Phyra71937;constitutive=1;ensembl_phase=1;rank=3 scaffold_61 ensembl protein_coding_gene 262296 263579 . + . ID=Phyra81604;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000052;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 262296 263579 . + . ID=Phyra81604;Parent=Phyra81604;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 262296 263579 . + 0 ID=Phyra81604;Parent=Phyra81604;rank=1 scaffold_61 . exon 262296 263579 . + . ID=Phyra81604.1;Parent=Phyra81604;constitutive=1;rank=1 scaffold_61 . biological_region 272892 272894 0.999 - . logic_name=eponine scaffold_61 . biological_region 273639 273645 0.999 + . logic_name=eponine scaffold_61 . biological_region 273779 273779 0.999 - . logic_name=eponine scaffold_61 . biological_region 273797 273798 0.999 - . logic_name=eponine scaffold_61 . biological_region 274183 274185 0.999 + . logic_name=eponine scaffold_61 . biological_region 277679 277683 0.999 + . logic_name=eponine scaffold_61 . biological_region 279005 279006 0.999 - . logic_name=eponine scaffold_61 ensembl protein_coding_gene 279151 280554 . + . ID=Phyra81606;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000054;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 279151 280554 . + . ID=Phyra81606;Parent=Phyra81606;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 279151 279734 . + 0 ID=Phyra81606;Parent=Phyra81606;rank=1 scaffold_61 . exon 279151 279734 . + . ID=Phyra81606.1;Parent=Phyra81606;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 . CDS 279876 280554 . + 0 ID=Phyra81606;Parent=Phyra81606;rank=2 scaffold_61 ensembl protein_coding_gene 272573 274703 . - . ID=Phyra96068;biotype=protein_coding;external_name=C_scaffold_61000012;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 272573 274703 . - . ID=Phyra96068;Parent=Phyra96068;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 272573 272599 . - 0 ID=Phyra96068;Parent=Phyra96068;rank=5 scaffold_61 . exon 272573 272599 . - . ID=Phyra96068.5;Parent=Phyra96068;constitutive=1;rank=5 scaffold_61 . CDS 272795 273655 . - 0 ID=Phyra96068;Parent=Phyra96068;rank=4 scaffold_61 . exon 272795 273655 . - . ID=Phyra96068.4;Parent=Phyra96068;constitutive=1;rank=4 scaffold_61 . CDS 273698 273764 . - 0 ID=Phyra96068;Parent=Phyra96068;rank=3 scaffold_61 . exon 273698 273764 . - . ID=Phyra96068.3;Parent=Phyra96068;constitutive=1;ensembl_phase=2;rank=3 scaffold_61 . CDS 274166 274658 . - 0 ID=Phyra96068;Parent=Phyra96068;rank=2 scaffold_61 . exon 274166 274658 . - . ID=Phyra96068.2;Parent=Phyra96068;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_61 . CDS 274685 274703 . - 0 ID=Phyra96068;Parent=Phyra96068;rank=1 scaffold_61 . exon 274685 274703 . - . ID=Phyra96068.1;Parent=Phyra96068;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . repeat_region 284545 284695 . ? . description=trf scaffold_61 . repeat_region 285816 285824 . ? . description=dust scaffold_61 . repeat_region 286100 286107 . ? . description=dust scaffold_61 . exon 279876 280554 . + . ID=Phyra81606.2;Parent=Phyra81606;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 ensembl protein_coding_gene 281179 282825 . + . ID=Phyra81607;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000055;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 281179 282825 . + . ID=Phyra81607;Parent=Phyra81607;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 281179 282825 . + 0 ID=Phyra81607;Parent=Phyra81607;rank=1 scaffold_61 . exon 281179 282825 . + . ID=Phyra81607.1;Parent=Phyra81607;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 282935 284269 . - . ID=Phyra81608;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000056;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 282935 284269 . - . ID=Phyra81608;Parent=Phyra81608;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 282935 283723 . - 0 ID=Phyra81608;Parent=Phyra81608;rank=3 scaffold_61 . exon 282935 283723 . - . ID=Phyra81608.3;Parent=Phyra81608;constitutive=1;rank=3 scaffold_61 . CDS 283787 283987 . - 0 ID=Phyra81608;Parent=Phyra81608;rank=2 scaffold_61 . exon 283787 283987 . - . ID=Phyra81608.2;Parent=Phyra81608;constitutive=1;rank=2 scaffold_61 . CDS 284066 284269 . - 0 ID=Phyra81608;Parent=Phyra81608;rank=1 scaffold_61 . exon 284066 284269 . - . ID=Phyra81608.1;Parent=Phyra81608;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 285264 285695 . + . ID=Phyra81609;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000057;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 285264 285695 . + . ID=Phyra81609;Parent=Phyra81609;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 285264 285695 . + 0 ID=Phyra81609;Parent=Phyra81609;rank=1 scaffold_61 . exon 285264 285695 . + . ID=Phyra81609.1;Parent=Phyra81609;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 287569 288042 . + . ID=Phyra81610;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000058;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 287569 288042 . + . ID=Phyra81610;Parent=Phyra81610;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 287569 288042 . + 0 ID=Phyra81610;Parent=Phyra81610;rank=1 scaffold_61 . exon 287569 288042 . + . ID=Phyra81610.1;Parent=Phyra81610;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 288176 289489 . - . ID=Phyra81611;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000059;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 288176 289489 . - . ID=Phyra81611;Parent=Phyra81611;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 288176 288943 . - 0 ID=Phyra81611;Parent=Phyra81611;rank=3 scaffold_61 . exon 288176 288943 . - . ID=Phyra81611.3;Parent=Phyra81611;constitutive=1;rank=3 scaffold_61 . CDS 289018 289224 . - 0 ID=Phyra81611;Parent=Phyra81611;rank=2 scaffold_61 . exon 289018 289224 . - . ID=Phyra81611.2;Parent=Phyra81611;constitutive=1;rank=2 scaffold_61 . CDS 289409 289489 . - 0 ID=Phyra81611;Parent=Phyra81611;rank=1 scaffold_61 . exon 289409 289489 . - . ID=Phyra81611.1;Parent=Phyra81611;constitutive=1;rank=1 scaffold_61 . biological_region 296682 296686 0.999 - . logic_name=eponine scaffold_61 ensembl protein_coding_gene 293251 294677 . + . ID=Phyra81613;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000061;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 293251 294677 . + . ID=Phyra81613;Parent=Phyra81613;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 293251 293262 . + 0 ID=Phyra81613;Parent=Phyra81613;rank=1 scaffold_61 . exon 293251 293262 . + . ID=Phyra81613.1;Parent=Phyra81613;constitutive=1;rank=1 scaffold_61 . CDS 293520 293678 . + 0 ID=Phyra81613;Parent=Phyra81613;rank=2 scaffold_61 . exon 293520 293678 . + . ID=Phyra81613.2;Parent=Phyra81613;constitutive=1;rank=2 scaffold_61 . CDS 293781 293844 . + 0 ID=Phyra81613;Parent=Phyra81613;rank=3 scaffold_61 . exon 293781 293844 . + . ID=Phyra81613.3;Parent=Phyra81613;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_61 . CDS 293901 294015 . + 0 ID=Phyra81613;Parent=Phyra81613;rank=4 scaffold_61 . exon 293901 294015 . + . ID=Phyra81613.4;Parent=Phyra81613;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_61 . CDS 294080 294677 . + 0 ID=Phyra81613;Parent=Phyra81613;rank=5 scaffold_61 . exon 294080 294677 . + . ID=Phyra81613.5;Parent=Phyra81613;constitutive=1;ensembl_phase=2;rank=5 scaffold_61 ensembl protein_coding_gene 296340 297461 . + . ID=Phyra81614;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000062;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 296340 297461 . + . ID=Phyra81614;Parent=Phyra81614;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 296340 296692 . + 0 ID=Phyra81614;Parent=Phyra81614;rank=1 scaffold_61 . exon 296340 296692 . + . ID=Phyra81614.1;Parent=Phyra81614;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 . CDS 296915 297461 . + 0 ID=Phyra81614;Parent=Phyra81614;rank=2 scaffold_61 . exon 296915 297461 . + . ID=Phyra81614.2;Parent=Phyra81614;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 ensembl protein_coding_gene 290557 291812 . - . ID=Phyra96070;biotype=protein_coding;external_name=C_scaffold_61000014;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 290557 291812 . - . ID=Phyra96070;Parent=Phyra96070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 290557 291351 . - 0 ID=Phyra96070;Parent=Phyra96070;rank=3 scaffold_61 . exon 290557 291351 . - . ID=Phyra96070.3;Parent=Phyra96070;constitutive=1;rank=3 scaffold_61 . CDS 291424 291624 . - 0 ID=Phyra96070;Parent=Phyra96070;rank=2 scaffold_61 . exon 291424 291624 . - . ID=Phyra96070.2;Parent=Phyra96070;constitutive=1;rank=2 scaffold_61 . CDS 291702 291812 . - 0 ID=Phyra96070;Parent=Phyra96070;rank=1 scaffold_61 . exon 291702 291812 . - . ID=Phyra96070.1;Parent=Phyra96070;constitutive=1;rank=1 scaffold_61 . repeat_region 305007 305014 . ? . description=dust scaffold_61 . repeat_region 306862 306873 . ? . description=dust scaffold_61 . repeat_region 309646 309677 . ? . description=trf scaffold_61 . repeat_region 309646 309683 . ? . description=dust scaffold_61 ensembl protein_coding_gene 299900 300999 . - . ID=Phyra81615;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000063;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 299900 300999 . - . ID=Phyra81615;Parent=Phyra81615;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 299900 300676 . - 0 ID=Phyra81615;Parent=Phyra81615;rank=3 scaffold_61 . exon 299900 300676 . - . ID=Phyra81615.3;Parent=Phyra81615;constitutive=1;rank=3 scaffold_61 . CDS 300714 300887 . - 0 ID=Phyra81615;Parent=Phyra81615;rank=2 scaffold_61 . exon 300714 300887 . - . ID=Phyra81615.2;Parent=Phyra81615;constitutive=1;rank=2 scaffold_61 . CDS 300958 300999 . - 0 ID=Phyra81615;Parent=Phyra81615;rank=1 scaffold_61 . exon 300958 300999 . - . ID=Phyra81615.1;Parent=Phyra81615;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 301475 302677 . + . ID=Phyra81616;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000064;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 301475 302677 . + . ID=Phyra81616;Parent=Phyra81616;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 301475 301510 . + 0 ID=Phyra81616;Parent=Phyra81616;rank=1 scaffold_61 . exon 301475 301510 . + . ID=Phyra81616.1;Parent=Phyra81616;constitutive=1;rank=1 scaffold_61 . CDS 301575 301781 . + 0 ID=Phyra81616;Parent=Phyra81616;rank=2 scaffold_61 . exon 301575 301781 . + . ID=Phyra81616.2;Parent=Phyra81616;constitutive=1;rank=2 scaffold_61 . CDS 301862 302677 . + 0 ID=Phyra81616;Parent=Phyra81616;rank=3 scaffold_61 . exon 301862 302677 . + . ID=Phyra81616.3;Parent=Phyra81616;constitutive=1;rank=3 scaffold_61 ensembl protein_coding_gene 308323 309471 . + . ID=Phyra81617;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000065;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 308323 309471 . + . ID=Phyra81617;Parent=Phyra81617;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 308323 308364 . + 0 ID=Phyra81617;Parent=Phyra81617;rank=1 scaffold_61 . exon 308323 308364 . + . ID=Phyra81617.1;Parent=Phyra81617;constitutive=1;rank=1 scaffold_61 . CDS 308449 308658 . + 0 ID=Phyra81617;Parent=Phyra81617;rank=2 scaffold_61 . exon 308449 308658 . + . ID=Phyra81617.2;Parent=Phyra81617;constitutive=1;rank=2 scaffold_61 . CDS 308728 309471 . + 0 ID=Phyra81617;Parent=Phyra81617;rank=3 scaffold_61 . exon 308728 309471 . + . ID=Phyra81617.3;Parent=Phyra81617;constitutive=1;rank=3 scaffold_61 ensembl tRNA_gene 319275 319347 . + . ID=EPrPRAG00000000096;biotype=tRNA;description=tRNA-Phe for anticodon AAA [Source:TRNASCAN_SE%3BAcc:tRNA-Phe];external_name=tRNA-Phe;logic_name=ncrna_eg scaffold_61 ensembl transcript 319275 319347 . + . ID=EPrPRAT00000000096;Parent=EPrPRAG00000000096;biotype=tRNA;logic_name=ncrna_eg scaffold_61 ensembl tRNA_gene 318734 318806 . + . ID=EPrPRAG00000000140;biotype=tRNA;description=tRNA-Phe for anticodon AAA [Source:TRNASCAN_SE%3BAcc:tRNA-Phe];external_name=tRNA-Phe;logic_name=ncrna_eg scaffold_61 ensembl transcript 318734 318806 . + . ID=EPrPRAT00000000140;Parent=EPrPRAG00000000140;biotype=tRNA;logic_name=ncrna_eg scaffold_61 . exon 319275 319347 . + . ID=EPrPRAE00000000096;Parent=EPrPRAT00000000096;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . exon 318734 318806 . + . ID=EPrPRAE00000000140;Parent=EPrPRAT00000000140;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 ensembl protein_coding_gene 310829 312069 . + . ID=Phyra81618;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_61000066;logic_name=jgi_phyra1 scaffold_61 ensembl transcript 310829 312069 . + . ID=Phyra81618;Parent=Phyra81618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_61 . CDS 310829 310954 . + 0 ID=Phyra81618;Parent=Phyra81618;rank=1 scaffold_61 . exon 310829 310954 . + . ID=Phyra81618.1;Parent=Phyra81618;constitutive=1;rank=1 scaffold_61 . CDS 311015 311206 . + 0 ID=Phyra81618;Parent=Phyra81618;rank=2 scaffold_61 . exon 311015 311206 . + . ID=Phyra81618.2;Parent=Phyra81618;constitutive=1;rank=2 scaffold_61 . CDS 311281 312069 . + 0 ID=Phyra81618;Parent=Phyra81618;rank=3 scaffold_61 . exon 311281 312069 . + . ID=Phyra81618.3;Parent=Phyra81618;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_59 1 327250 scaffold_59 . biological_region 170 173 0.999 - . logic_name=eponine scaffold_59 . repeat_region 1093 5962 . ? . description=dust scaffold_59 . repeat_region 6470 6489 . ? . description=trf scaffold_59 ensembl protein_coding_gene 6199 9619 . - . ID=Phyra81337;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000001;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 6199 9619 . - . ID=Phyra81337;Parent=Phyra81337;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 6199 6280 . - 0 ID=Phyra81337;Parent=Phyra81337;rank=2 scaffold_59 . exon 6199 6280 . - . ID=Phyra81337.2;Parent=Phyra81337;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 6300 9619 . - 0 ID=Phyra81337;Parent=Phyra81337;rank=1 scaffold_59 . exon 6300 9619 . - . ID=Phyra81337.1;Parent=Phyra81337;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . repeat_region 18257 18333 . + . description=(CA)n scaffold_59 . repeat_region 20013 20062 . ? . description=dust scaffold_59 . biological_region 20544 20545 0.999 - . logic_name=eponine scaffold_59 . repeat_region 21835 21888 . ? . description=trf scaffold_59 . repeat_region 22243 22253 . ? . description=dust scaffold_59 . biological_region 22797 22801 0.999 - . logic_name=eponine scaffold_59 . biological_region 22879 22882 0.999 - . logic_name=eponine scaffold_59 ensembl protein_coding_gene 25289 35628 . + . ID=Phyra71900;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_59000001;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 25289 35628 . + . ID=Phyra71900;Parent=Phyra71900;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 25289 35182 . + 0 ID=Phyra71900;Parent=Phyra71900;rank=1 scaffold_59 . exon 25289 35182 . + . ID=Phyra71900.1;Parent=Phyra71900;constitutive=1;rank=1 scaffold_59 . CDS 35247 35428 . + 0 ID=Phyra71900;Parent=Phyra71900;rank=2 scaffold_59 . CDS 35496 35628 . + 0 ID=Phyra71900;Parent=Phyra71900;rank=3 scaffold_59 ensembl protein_coding_gene 20290 21564 . - . ID=Phyra81338;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000002;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 20290 21564 . - . ID=Phyra81338;Parent=Phyra81338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 20290 20829 . - 0 ID=Phyra81338;Parent=Phyra81338;rank=3 scaffold_59 . exon 20290 20829 . - . ID=Phyra81338.3;Parent=Phyra81338;constitutive=1;rank=3 scaffold_59 . CDS 21025 21250 . - 0 ID=Phyra81338;Parent=Phyra81338;rank=2 scaffold_59 . exon 21025 21250 . - . ID=Phyra81338.2;Parent=Phyra81338;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 21320 21564 . - 0 ID=Phyra81338;Parent=Phyra81338;rank=1 scaffold_59 . exon 21320 21564 . - . ID=Phyra81338.1;Parent=Phyra81338;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . exon 35247 35428 . + . ID=Phyra71900.2;Parent=Phyra71900;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_59 . exon 35496 35628 . + . ID=Phyra71900.3;Parent=Phyra71900;constitutive=1;ensembl_phase=2;rank=3 scaffold_59 ensembl protein_coding_gene 36202 37321 . + . ID=Phyra81340;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000004;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 36202 37321 . + . ID=Phyra81340;Parent=Phyra81340;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 36202 36351 . + 0 ID=Phyra81340;Parent=Phyra81340;rank=1 scaffold_59 . exon 36202 36351 . + . ID=Phyra81340.1;Parent=Phyra81340;constitutive=1;rank=1 scaffold_59 . CDS 36412 36803 . + 0 ID=Phyra81340;Parent=Phyra81340;rank=2 scaffold_59 . exon 36412 36803 . + . ID=Phyra81340.2;Parent=Phyra81340;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_59 . CDS 36916 37321 . + 0 ID=Phyra81340;Parent=Phyra81340;rank=3 scaffold_59 . exon 36916 37321 . + . ID=Phyra81340.3;Parent=Phyra81340;constitutive=1;ensembl_phase=2;rank=3 scaffold_59 ensembl protein_coding_gene 37841 41655 . - . ID=Phyra81341;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000005;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 37841 41655 . - . ID=Phyra81341;Parent=Phyra81341;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 37841 39653 . - 0 ID=Phyra81341;Parent=Phyra81341;rank=3 scaffold_59 . exon 37841 39653 . - . ID=Phyra81341.3;Parent=Phyra81341;constitutive=1;ensembl_phase=2;rank=3 scaffold_59 . CDS 39863 40293 . - 0 ID=Phyra81341;Parent=Phyra81341;rank=2 scaffold_59 . CDS 40369 41655 . - 0 ID=Phyra81341;Parent=Phyra81341;rank=1 scaffold_59 . biological_region 43095 43099 0.999 - . logic_name=eponine scaffold_59 . biological_region 47202 47206 0.999 + . logic_name=eponine scaffold_59 . biological_region 47567 47568 0.999 + . logic_name=eponine scaffold_59 ensembl protein_coding_gene 45911 47448 . - . ID=Phyra71901;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_59000002;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 45911 47448 . - . ID=Phyra71901;Parent=Phyra71901;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 45911 45978 . - 0 ID=Phyra71901;Parent=Phyra71901;rank=2 scaffold_59 . exon 45911 45978 . - . ID=Phyra71901.2;Parent=Phyra71901;constitutive=1;ensembl_phase=1;rank=2 scaffold_59 . CDS 45999 47448 . - 0 ID=Phyra71901;Parent=Phyra71901;rank=1 scaffold_59 . exon 45999 47448 . - . ID=Phyra71901.1;Parent=Phyra71901;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 . exon 39863 40293 . - . ID=Phyra81341.2;Parent=Phyra81341;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_59 . exon 40369 41655 . - . ID=Phyra81341.1;Parent=Phyra81341;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 42490 45456 . + . ID=Phyra81342;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000006;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 42490 45456 . + . ID=Phyra81342;Parent=Phyra81342;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 42490 45291 . + 0 ID=Phyra81342;Parent=Phyra81342;rank=1 scaffold_59 . exon 42490 45291 . + . ID=Phyra81342.1;Parent=Phyra81342;constitutive=1;rank=1 scaffold_59 . CDS 45364 45456 . + 0 ID=Phyra81342;Parent=Phyra81342;rank=2 scaffold_59 . exon 45364 45456 . + . ID=Phyra81342.2;Parent=Phyra81342;constitutive=1;rank=2 scaffold_59 ensembl protein_coding_gene 48463 51706 . - . ID=Phyra95953;biotype=protein_coding;external_name=C_scaffold_59000001;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 48463 51706 . - . ID=Phyra95953;Parent=Phyra95953;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 48463 48467 . - 0 ID=Phyra95953;Parent=Phyra95953;rank=6 scaffold_59 . exon 48463 48467 . - . ID=Phyra95953.6;Parent=Phyra95953;constitutive=1;ensembl_phase=1;rank=6 scaffold_59 . CDS 48638 48725 . - 0 ID=Phyra95953;Parent=Phyra95953;rank=5 scaffold_59 . exon 48638 48725 . - . ID=Phyra95953.5;Parent=Phyra95953;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_59 . CDS 48849 49011 . - 0 ID=Phyra95953;Parent=Phyra95953;rank=4 scaffold_59 . exon 48849 49011 . - . ID=Phyra95953.4;Parent=Phyra95953;constitutive=1;ensembl_phase=2;rank=4 scaffold_59 . CDS 49086 49867 . - 0 ID=Phyra95953;Parent=Phyra95953;rank=3 scaffold_59 . exon 49086 49867 . - . ID=Phyra95953.3;Parent=Phyra95953;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_59 . CDS 51140 51288 . - 0 ID=Phyra95953;Parent=Phyra95953;rank=2 scaffold_59 . CDS 51478 51706 . - 0 ID=Phyra95953;Parent=Phyra95953;rank=1 scaffold_59 ensembl protein_coding_gene 55205 56728 . - . ID=Phyra81345;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000009;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 55205 56728 . - . ID=Phyra81345;Parent=Phyra81345;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 55205 56026 . - 0 ID=Phyra81345;Parent=Phyra81345;rank=5 scaffold_59 . exon 55205 56026 . - . ID=Phyra81345.5;Parent=Phyra81345;constitutive=1;rank=5 scaffold_59 . CDS 56119 56183 . - 0 ID=Phyra81345;Parent=Phyra81345;rank=4 scaffold_59 . exon 56119 56183 . - . ID=Phyra81345.4;Parent=Phyra81345;constitutive=1;ensembl_phase=1;rank=4 scaffold_59 . CDS 56255 56309 . - 0 ID=Phyra81345;Parent=Phyra81345;rank=3 scaffold_59 . exon 56255 56309 . - . ID=Phyra81345.3;Parent=Phyra81345;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_59 . CDS 56389 56483 . - 0 ID=Phyra81345;Parent=Phyra81345;rank=2 scaffold_59 . exon 56389 56483 . - . ID=Phyra81345.2;Parent=Phyra81345;constitutive=1;ensembl_phase=1;rank=2 scaffold_59 . CDS 56575 56728 . - 0 ID=Phyra81345;Parent=Phyra81345;rank=1 scaffold_59 . exon 56575 56728 . - . ID=Phyra81345.1;Parent=Phyra81345;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 . exon 51140 51288 . - . ID=Phyra95953.2;Parent=Phyra95953;constitutive=1;ensembl_phase=1;rank=2 scaffold_59 . exon 51478 51706 . - . ID=Phyra95953.1;Parent=Phyra95953;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 ensembl protein_coding_gene 52166 52888 . + . ID=Phyra95954;biotype=protein_coding;external_name=C_scaffold_59000002;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 52166 52888 . + . ID=Phyra95954;Parent=Phyra95954;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 52166 52346 . + 0 ID=Phyra95954;Parent=Phyra95954;rank=1 scaffold_59 . exon 52166 52346 . + . ID=Phyra95954.1;Parent=Phyra95954;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 . CDS 52403 52524 . + 0 ID=Phyra95954;Parent=Phyra95954;rank=2 scaffold_59 . exon 52403 52524 . + . ID=Phyra95954.2;Parent=Phyra95954;constitutive=1;ensembl_phase=1;rank=2 scaffold_59 . CDS 52868 52888 . + 0 ID=Phyra95954;Parent=Phyra95954;rank=3 scaffold_59 . exon 52868 52888 . + . ID=Phyra95954.3;Parent=Phyra95954;constitutive=1;rank=3 scaffold_59 . repeat_region 59702 59712 . ? . description=dust scaffold_59 . biological_region 63881 63884 0.999 - . logic_name=eponine scaffold_59 . biological_region 63920 63926 0.999 - . logic_name=eponine scaffold_59 . repeat_region 67917 67936 . ? . description=trf scaffold_59 ensembl protein_coding_gene 65087 65563 . - . ID=Phyra51249;biotype=protein_coding;external_name=gwEuk.59.79.1;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 65087 65563 . - . ID=Phyra51249;Parent=Phyra51249;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 65087 65272 . - 0 ID=Phyra51249;Parent=Phyra51249;rank=3 scaffold_59 . exon 65087 65272 . - . ID=Phyra51249.3;Parent=Phyra51249;constitutive=1;rank=3 scaffold_59 . CDS 65337 65426 . - 0 ID=Phyra51249;Parent=Phyra51249;rank=2 scaffold_59 . exon 65337 65426 . - . ID=Phyra51249.2;Parent=Phyra51249;constitutive=1;rank=2 scaffold_59 . CDS 65492 65563 . - 0 ID=Phyra51249;Parent=Phyra51249;rank=1 scaffold_59 . exon 65492 65563 . - . ID=Phyra51249.1;Parent=Phyra51249;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 65969 68333 . + . ID=Phyra51257;biotype=protein_coding;external_name=gwEuk.59.87.1;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 65969 68333 . + . ID=Phyra51257;Parent=Phyra51257;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 65969 66852 . + 0 ID=Phyra51257;Parent=Phyra51257;rank=1 scaffold_59 . exon 65969 66852 . + . ID=Phyra51257.1;Parent=Phyra51257;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 66917 68333 . + 0 ID=Phyra51257;Parent=Phyra51257;rank=2 scaffold_59 . exon 66917 68333 . + . ID=Phyra51257.2;Parent=Phyra51257;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 ensembl protein_coding_gene 63291 63905 . - . ID=Phyra95955;biotype=protein_coding;external_name=C_scaffold_59000003;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 63291 63905 . - . ID=Phyra95955;Parent=Phyra95955;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 63291 63298 . - 0 ID=Phyra95955;Parent=Phyra95955;rank=3 scaffold_59 . exon 63291 63298 . - . ID=Phyra95955.3;Parent=Phyra95955;constitutive=1;ensembl_phase=1;rank=3 scaffold_59 . CDS 63331 63480 . - 0 ID=Phyra95955;Parent=Phyra95955;rank=2 scaffold_59 . exon 63331 63480 . - . ID=Phyra95955.2;Parent=Phyra95955;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_59 . CDS 63560 63905 . - 0 ID=Phyra95955;Parent=Phyra95955;rank=1 scaffold_59 . exon 63560 63905 . - . ID=Phyra95955.1;Parent=Phyra95955;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 ensembl protein_coding_gene 64055 64900 . + . ID=Phyra95957;biotype=protein_coding;external_name=C_scaffold_59000005;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 64055 64900 . + . ID=Phyra95957;Parent=Phyra95957;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 64055 64900 . + 0 ID=Phyra95957;Parent=Phyra95957;rank=1 scaffold_59 . exon 64055 64900 . + . ID=Phyra95957.1;Parent=Phyra95957;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 71577 72455 . + . ID=Phyra81350;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000014;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 71577 72455 . + . ID=Phyra81350;Parent=Phyra81350;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 71577 72316 . + 0 ID=Phyra81350;Parent=Phyra81350;rank=1 scaffold_59 . exon 71577 72316 . + . ID=Phyra81350.1;Parent=Phyra81350;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 72407 72455 . + 0 ID=Phyra81350;Parent=Phyra81350;rank=2 scaffold_59 . exon 72407 72455 . + . ID=Phyra81350.2;Parent=Phyra81350;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 ensembl protein_coding_gene 76129 79446 . - . ID=Phyra81351;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000015;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 76129 79446 . - . ID=Phyra81351;Parent=Phyra81351;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 76129 76255 . - 0 ID=Phyra81351;Parent=Phyra81351;rank=3 scaffold_59 . exon 76129 76255 . - . ID=Phyra81351.3;Parent=Phyra81351;constitutive=1;ensembl_phase=2;rank=3 scaffold_59 . CDS 76320 79344 . - 0 ID=Phyra81351;Parent=Phyra81351;rank=2 scaffold_59 . exon 76320 79344 . - . ID=Phyra81351.2;Parent=Phyra81351;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_59 . CDS 79413 79446 . - 0 ID=Phyra81351;Parent=Phyra81351;rank=1 scaffold_59 ensembl protein_coding_gene 70569 71077 . - . ID=Phyra95961;biotype=protein_coding;external_name=C_scaffold_59000009;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 70569 71077 . - . ID=Phyra95961;Parent=Phyra95961;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 70569 70583 . - 0 ID=Phyra95961;Parent=Phyra95961;rank=2 scaffold_59 . exon 70569 70583 . - . ID=Phyra95961.2;Parent=Phyra95961;constitutive=1;rank=2 scaffold_59 . CDS 70625 71077 . - 0 ID=Phyra95961;Parent=Phyra95961;rank=1 scaffold_59 . exon 70625 71077 . - . ID=Phyra95961.1;Parent=Phyra95961;constitutive=1;rank=1 scaffold_59 . repeat_region 81139 81160 . ? . description=trf scaffold_59 . exon 79413 79446 . - . ID=Phyra81351.1;Parent=Phyra81351;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 ensembl protein_coding_gene 79627 80979 . + . ID=Phyra81352;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000016;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 79627 80979 . + . ID=Phyra81352;Parent=Phyra81352;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 79627 80979 . + 0 ID=Phyra81352;Parent=Phyra81352;rank=1 scaffold_59 . exon 79627 80979 . + . ID=Phyra81352.1;Parent=Phyra81352;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 85944 88637 . + . ID=Phyra95962;biotype=protein_coding;external_name=C_scaffold_59000010;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 85944 88637 . + . ID=Phyra95962;Parent=Phyra95962;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 85944 86185 . + 0 ID=Phyra95962;Parent=Phyra95962;rank=1 scaffold_59 . exon 85944 86185 . + . ID=Phyra95962.1;Parent=Phyra95962;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 86225 86528 . + 0 ID=Phyra95962;Parent=Phyra95962;rank=2 scaffold_59 . exon 86225 86528 . + . ID=Phyra95962.2;Parent=Phyra95962;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 86637 87585 . + 0 ID=Phyra95962;Parent=Phyra95962;rank=3 scaffold_59 . exon 86637 87585 . + . ID=Phyra95962.3;Parent=Phyra95962;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_59 . CDS 87658 87761 . + 0 ID=Phyra95962;Parent=Phyra95962;rank=4 scaffold_59 . exon 87658 87761 . + . ID=Phyra95962.4;Parent=Phyra95962;constitutive=1;ensembl_phase=1;rank=4 scaffold_59 . CDS 87968 88154 . + 0 ID=Phyra95962;Parent=Phyra95962;rank=5 scaffold_59 . exon 87968 88154 . + . ID=Phyra95962.5;Parent=Phyra95962;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_59 . CDS 88182 88333 . + 0 ID=Phyra95962;Parent=Phyra95962;rank=6 scaffold_59 . exon 88182 88333 . + . ID=Phyra95962.6;Parent=Phyra95962;constitutive=1;ensembl_phase=1;rank=6 scaffold_59 . CDS 88602 88637 . + 0 ID=Phyra95962;Parent=Phyra95962;rank=7 scaffold_59 . exon 88602 88637 . + . ID=Phyra95962.7;Parent=Phyra95962;constitutive=1;rank=7 scaffold_59 . repeat_region 91475 91482 . ? . description=dust scaffold_59 . biological_region 92221 92222 0.999 - . logic_name=eponine scaffold_59 . biological_region 92246 92247 0.999 + . logic_name=eponine scaffold_59 . biological_region 94981 94982 0.999 - . logic_name=eponine scaffold_59 . biological_region 97595 97600 0.999 + . logic_name=eponine scaffold_59 . biological_region 98743 98746 0.999 + . logic_name=eponine scaffold_59 ensembl protein_coding_gene 91947 94334 . + . ID=Phyra81354;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000018;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 91947 94334 . + . ID=Phyra81354;Parent=Phyra81354;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 91947 94334 . + 0 ID=Phyra81354;Parent=Phyra81354;rank=1 scaffold_59 . exon 91947 94334 . + . ID=Phyra81354.1;Parent=Phyra81354;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 95080 97457 . + . ID=Phyra81355;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000019;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 95080 97457 . + . ID=Phyra81355;Parent=Phyra81355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 95080 95588 . + 0 ID=Phyra81355;Parent=Phyra81355;rank=1 scaffold_59 . exon 95080 95588 . + . ID=Phyra81355.1;Parent=Phyra81355;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 95714 97457 . + 0 ID=Phyra81355;Parent=Phyra81355;rank=2 scaffold_59 . exon 95714 97457 . + . ID=Phyra81355.2;Parent=Phyra81355;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 ensembl protein_coding_gene 98508 100070 . + . ID=Phyra81356;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000020;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 98508 100070 . + . ID=Phyra81356;Parent=Phyra81356;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 98508 100070 . + 0 ID=Phyra81356;Parent=Phyra81356;rank=1 scaffold_59 . exon 98508 100070 . + . ID=Phyra81356.1;Parent=Phyra81356;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 103285 104454 . + . ID=Phyra81358;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000022;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 103285 104454 . + . ID=Phyra81358;Parent=Phyra81358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 103285 104454 . + 0 ID=Phyra81358;Parent=Phyra81358;rank=1 scaffold_59 . exon 103285 104454 . + . ID=Phyra81358.1;Parent=Phyra81358;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 107220 108569 . + . ID=Phyra81359;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000023;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 107220 108569 . + . ID=Phyra81359;Parent=Phyra81359;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 107220 107684 . + 0 ID=Phyra81359;Parent=Phyra81359;rank=1 scaffold_59 . exon 107220 107684 . + . ID=Phyra81359.1;Parent=Phyra81359;constitutive=1;rank=1 scaffold_59 . CDS 107847 107924 . + 0 ID=Phyra81359;Parent=Phyra81359;rank=2 scaffold_59 . exon 107847 107924 . + . ID=Phyra81359.2;Parent=Phyra81359;constitutive=1;rank=2 scaffold_59 . CDS 108130 108219 . + 0 ID=Phyra81359;Parent=Phyra81359;rank=3 scaffold_59 . exon 108130 108219 . + . ID=Phyra81359.3;Parent=Phyra81359;constitutive=1;rank=3 scaffold_59 . CDS 108429 108569 . + 0 ID=Phyra81359;Parent=Phyra81359;rank=4 scaffold_59 . exon 108429 108569 . + . ID=Phyra81359.4;Parent=Phyra81359;constitutive=1;rank=4 scaffold_59 ensembl protein_coding_gene 100668 103117 . - . ID=Phyra95964;biotype=protein_coding;external_name=C_scaffold_59000012;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 100668 103117 . - . ID=Phyra95964;Parent=Phyra95964;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 100668 100677 . - 0 ID=Phyra95964;Parent=Phyra95964;rank=2 scaffold_59 . exon 100668 100677 . - . ID=Phyra95964.2;Parent=Phyra95964;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 100707 103117 . - 0 ID=Phyra95964;Parent=Phyra95964;rank=1 scaffold_59 . exon 100707 103117 . - . ID=Phyra95964.1;Parent=Phyra95964;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . repeat_region 109987 109994 . ? . description=dust scaffold_59 . biological_region 111690 111694 0.999 + . logic_name=eponine scaffold_59 . biological_region 111721 111723 0.999 + . logic_name=eponine scaffold_59 . biological_region 111764 111766 0.999 + . logic_name=eponine scaffold_59 . biological_region 111835 111839 0.999 - . logic_name=eponine scaffold_59 . repeat_region 111918 111934 . ? . description=dust scaffold_59 . biological_region 112351 112355 0.999 + . logic_name=eponine scaffold_59 . biological_region 114009 114010 0.999 + . logic_name=eponine scaffold_59 . biological_region 115490 115494 0.999 + . logic_name=eponine scaffold_59 . biological_region 115537 115543 0.999 + . logic_name=eponine scaffold_59 ensembl protein_coding_gene 113716 115193 . - . ID=Phyra51263;biotype=protein_coding;external_name=gwEuk.59.93.1;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 113716 115193 . - . ID=Phyra51263;Parent=Phyra51263;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 113716 113949 . - 0 ID=Phyra51263;Parent=Phyra51263;rank=9 scaffold_59 . exon 113716 113949 . - . ID=Phyra51263.9;Parent=Phyra51263;constitutive=1;rank=9 scaffold_59 . CDS 114014 114149 . - 0 ID=Phyra51263;Parent=Phyra51263;rank=8 scaffold_59 . exon 114014 114149 . - . ID=Phyra51263.8;Parent=Phyra51263;constitutive=1;ensembl_phase=2;rank=8 scaffold_59 . CDS 114215 114279 . - 0 ID=Phyra51263;Parent=Phyra51263;rank=7 scaffold_59 . exon 114215 114279 . - . ID=Phyra51263.7;Parent=Phyra51263;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_59 . CDS 114376 114420 . - 0 ID=Phyra51263;Parent=Phyra51263;rank=6 scaffold_59 . exon 114376 114420 . - . ID=Phyra51263.6;Parent=Phyra51263;constitutive=1;rank=6 scaffold_59 . CDS 114478 114542 . - 0 ID=Phyra51263;Parent=Phyra51263;rank=5 scaffold_59 . exon 114478 114542 . - . ID=Phyra51263.5;Parent=Phyra51263;constitutive=1;ensembl_phase=1;rank=5 scaffold_59 . CDS 114610 114683 . - 0 ID=Phyra51263;Parent=Phyra51263;rank=4 scaffold_59 . exon 114610 114683 . - . ID=Phyra51263.4;Parent=Phyra51263;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_59 . CDS 114791 114882 . - 0 ID=Phyra51263;Parent=Phyra51263;rank=3 scaffold_59 . exon 114791 114882 . - . ID=Phyra51263.3;Parent=Phyra51263;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_59 . CDS 114974 115069 . - 0 ID=Phyra51263;Parent=Phyra51263;rank=2 scaffold_59 . exon 114974 115069 . - . ID=Phyra51263.2;Parent=Phyra51263;constitutive=1;rank=2 scaffold_59 . CDS 115170 115193 . - 0 ID=Phyra51263;Parent=Phyra51263;rank=1 scaffold_59 . exon 115170 115193 . - . ID=Phyra51263.1;Parent=Phyra51263;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 110587 111849 . - . ID=Phyra95965;biotype=protein_coding;external_name=C_scaffold_59000013;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 110587 111849 . - . ID=Phyra95965;Parent=Phyra95965;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 110587 110961 . - 0 ID=Phyra95965;Parent=Phyra95965;rank=4 scaffold_59 . exon 110587 110961 . - . ID=Phyra95965.4;Parent=Phyra95965;constitutive=1;rank=4 scaffold_59 . CDS 111040 111333 . - 0 ID=Phyra95965;Parent=Phyra95965;rank=3 scaffold_59 . exon 111040 111333 . - . ID=Phyra95965.3;Parent=Phyra95965;constitutive=1;rank=3 scaffold_59 . CDS 111412 111648 . - 0 ID=Phyra95965;Parent=Phyra95965;rank=2 scaffold_59 . exon 111412 111648 . - . ID=Phyra95965.2;Parent=Phyra95965;constitutive=1;rank=2 scaffold_59 . CDS 111721 111849 . - 0 ID=Phyra95965;Parent=Phyra95965;rank=1 scaffold_59 . exon 111721 111849 . - . ID=Phyra95965.1;Parent=Phyra95965;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 112309 113350 . + . ID=Phyra95967;biotype=protein_coding;external_name=C_scaffold_59000015;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 112309 113350 . + . ID=Phyra95967;Parent=Phyra95967;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 112309 112366 . + 0 ID=Phyra95967;Parent=Phyra95967;rank=1 scaffold_59 . exon 112309 112366 . + . ID=Phyra95967.1;Parent=Phyra95967;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 . CDS 112457 112575 . + 0 ID=Phyra95967;Parent=Phyra95967;rank=2 scaffold_59 . exon 112457 112575 . + . ID=Phyra95967.2;Parent=Phyra95967;constitutive=1;ensembl_phase=1;rank=2 scaffold_59 . CDS 112660 112844 . + 0 ID=Phyra95967;Parent=Phyra95967;rank=3 scaffold_59 . exon 112660 112844 . + . ID=Phyra95967.3;Parent=Phyra95967;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_59 . CDS 112923 112992 . + 0 ID=Phyra95967;Parent=Phyra95967;rank=4 scaffold_59 . exon 112923 112992 . + . ID=Phyra95967.4;Parent=Phyra95967;constitutive=1;ensembl_phase=2;rank=4 scaffold_59 . CDS 113069 113350 . + 0 ID=Phyra95967;Parent=Phyra95967;rank=5 scaffold_59 . exon 113069 113350 . + . ID=Phyra95967.5;Parent=Phyra95967;constitutive=1;rank=5 scaffold_59 ensembl protein_coding_gene 115477 117117 . + . ID=Phyra95972;biotype=protein_coding;external_name=C_scaffold_59000020;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 115477 117117 . + . ID=Phyra95972;Parent=Phyra95972;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 115477 115899 . + 0 ID=Phyra95972;Parent=Phyra95972;rank=1 scaffold_59 . exon 115477 115899 . + . ID=Phyra95972.1;Parent=Phyra95972;constitutive=1;rank=1 scaffold_59 . CDS 116050 117117 . + 0 ID=Phyra95972;Parent=Phyra95972;rank=2 scaffold_59 . exon 116050 117117 . + . ID=Phyra95972.2;Parent=Phyra95972;constitutive=1;rank=2 scaffold_59 ensembl protein_coding_gene 117297 117859 . + . ID=Phyra95974;biotype=protein_coding;external_name=C_scaffold_59000022;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 117297 117859 . + . ID=Phyra95974;Parent=Phyra95974;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 117297 117799 . + 0 ID=Phyra95974;Parent=Phyra95974;rank=1 scaffold_59 . exon 117297 117799 . + . ID=Phyra95974.1;Parent=Phyra95974;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 117853 117859 . + 0 ID=Phyra95974;Parent=Phyra95974;rank=2 scaffold_59 . exon 117853 117859 . + . ID=Phyra95974.2;Parent=Phyra95974;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 ensembl protein_coding_gene 118136 122054 . - . ID=Phyra95977;biotype=protein_coding;external_name=C_scaffold_59000025;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 118136 122054 . - . ID=Phyra95977;Parent=Phyra95977;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 118136 118714 . - 0 ID=Phyra95977;Parent=Phyra95977;rank=11 scaffold_59 . exon 118136 118714 . - . ID=Phyra95977.11;Parent=Phyra95977;constitutive=1;rank=11 scaffold_59 . CDS 118921 119016 . - 0 ID=Phyra95977;Parent=Phyra95977;rank=10 scaffold_59 . exon 118921 119016 . - . ID=Phyra95977.10;Parent=Phyra95977;constitutive=1;rank=10 scaffold_59 . CDS 119081 119140 . - 0 ID=Phyra95977;Parent=Phyra95977;rank=9 scaffold_59 . CDS 119215 119247 . - 0 ID=Phyra95977;Parent=Phyra95977;rank=8 scaffold_59 . CDS 119329 119590 . - 0 ID=Phyra95977;Parent=Phyra95977;rank=7 scaffold_59 . CDS 120021 120454 . - 0 ID=Phyra95977;Parent=Phyra95977;rank=6 scaffold_59 . CDS 120535 120693 . - 0 ID=Phyra95977;Parent=Phyra95977;rank=5 scaffold_59 . CDS 120762 120797 . - 0 ID=Phyra95977;Parent=Phyra95977;rank=4 scaffold_59 . CDS 120875 120934 . - 0 ID=Phyra95977;Parent=Phyra95977;rank=3 scaffold_59 . CDS 121147 121179 . - 0 ID=Phyra95977;Parent=Phyra95977;rank=2 scaffold_59 . CDS 121635 122054 . - 0 ID=Phyra95977;Parent=Phyra95977;rank=1 scaffold_59 ensembl protein_coding_gene 125250 128297 . + . ID=Phyra71903;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_59000004;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 125250 128297 . + . ID=Phyra71903;Parent=Phyra71903;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 125250 128297 . + 0 ID=Phyra71903;Parent=Phyra71903;rank=1 scaffold_59 . exon 125250 128297 . + . ID=Phyra71903.1;Parent=Phyra71903;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 124016 124798 . - . ID=Phyra81366;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000030;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 124016 124798 . - . ID=Phyra81366;Parent=Phyra81366;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 124016 124798 . - 0 ID=Phyra81366;Parent=Phyra81366;rank=1 scaffold_59 . exon 124016 124798 . - . ID=Phyra81366.1;Parent=Phyra81366;constitutive=1;rank=1 scaffold_59 . exon 119081 119140 . - . ID=Phyra95977.9;Parent=Phyra95977;constitutive=1;rank=9 scaffold_59 . exon 119215 119247 . - . ID=Phyra95977.8;Parent=Phyra95977;constitutive=1;rank=8 scaffold_59 . exon 119329 119590 . - . ID=Phyra95977.7;Parent=Phyra95977;constitutive=1;ensembl_phase=2;rank=7 scaffold_59 . exon 120021 120454 . - . ID=Phyra95977.6;Parent=Phyra95977;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_59 . exon 120535 120693 . - . ID=Phyra95977.5;Parent=Phyra95977;constitutive=1;rank=5 scaffold_59 . exon 120762 120797 . - . ID=Phyra95977.4;Parent=Phyra95977;constitutive=1;rank=4 scaffold_59 . exon 120875 120934 . - . ID=Phyra95977.3;Parent=Phyra95977;constitutive=1;rank=3 scaffold_59 . exon 121147 121179 . - . ID=Phyra95977.2;Parent=Phyra95977;constitutive=1;rank=2 scaffold_59 . exon 121635 122054 . - . ID=Phyra95977.1;Parent=Phyra95977;constitutive=1;rank=1 scaffold_59 . repeat_region 133909 133934 . ? . description=trf scaffold_59 . repeat_region 133909 133935 . ? . description=trf scaffold_59 . biological_region 134395 134399 0.999 + . logic_name=eponine scaffold_59 . biological_region 136423 136428 0.999 - . logic_name=eponine scaffold_59 . biological_region 136770 136770 0.999 - . logic_name=eponine scaffold_59 ensembl protein_coding_gene 129298 137173 . - . ID=Phyra81368;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000032;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 129298 137173 . - . ID=Phyra81368;Parent=Phyra81368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 129298 129306 . - 0 ID=Phyra81368;Parent=Phyra81368;rank=8 scaffold_59 . exon 129298 129306 . - . ID=Phyra81368.8;Parent=Phyra81368;constitutive=1;rank=8 scaffold_59 . CDS 129395 129911 . - 0 ID=Phyra81368;Parent=Phyra81368;rank=7 scaffold_59 . exon 129395 129911 . - . ID=Phyra81368.7;Parent=Phyra81368;constitutive=1;ensembl_phase=2;rank=7 scaffold_59 . CDS 130031 130107 . - 0 ID=Phyra81368;Parent=Phyra81368;rank=6 scaffold_59 . exon 130031 130107 . - . ID=Phyra81368.6;Parent=Phyra81368;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_59 . CDS 130202 131079 . - 0 ID=Phyra81368;Parent=Phyra81368;rank=5 scaffold_59 . exon 130202 131079 . - . ID=Phyra81368.5;Parent=Phyra81368;constitutive=1;ensembl_phase=1;rank=5 scaffold_59 . CDS 131153 131603 . - 0 ID=Phyra81368;Parent=Phyra81368;rank=4 scaffold_59 . exon 131153 131603 . - . ID=Phyra81368.4;Parent=Phyra81368;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_59 . CDS 131681 132158 . - 0 ID=Phyra81368;Parent=Phyra81368;rank=3 scaffold_59 . exon 131681 132158 . - . ID=Phyra81368.3;Parent=Phyra81368;constitutive=1;ensembl_phase=2;rank=3 scaffold_59 . CDS 132604 134590 . - 0 ID=Phyra81368;Parent=Phyra81368;rank=2 scaffold_59 . exon 132604 134590 . - . ID=Phyra81368.2;Parent=Phyra81368;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_59 . CDS 134932 137173 . - 0 ID=Phyra81368;Parent=Phyra81368;rank=1 scaffold_59 . exon 134932 137173 . - . ID=Phyra81368.1;Parent=Phyra81368;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 ensembl protein_coding_gene 137780 139195 . + . ID=Phyra81369;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000033;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 137780 139195 . + . ID=Phyra81369;Parent=Phyra81369;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 137780 139195 . + 0 ID=Phyra81369;Parent=Phyra81369;rank=1 scaffold_59 . exon 137780 139195 . + . ID=Phyra81369.1;Parent=Phyra81369;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 139918 141285 . + . ID=Phyra81370;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000034;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 139918 141285 . + . ID=Phyra81370;Parent=Phyra81370;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 139918 140302 . + 0 ID=Phyra81370;Parent=Phyra81370;rank=1 scaffold_59 . exon 139918 140302 . + . ID=Phyra81370.1;Parent=Phyra81370;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 . CDS 140651 141285 . + 0 ID=Phyra81370;Parent=Phyra81370;rank=2 scaffold_59 . exon 140651 141285 . + . ID=Phyra81370.2;Parent=Phyra81370;constitutive=1;ensembl_phase=1;rank=2 scaffold_59 ensembl protein_coding_gene 144259 147045 . + . ID=Phyra81371;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000035;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 144259 147045 . + . ID=Phyra81371;Parent=Phyra81371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 144259 147045 . + 0 ID=Phyra81371;Parent=Phyra81371;rank=1 scaffold_59 . exon 144259 147045 . + . ID=Phyra81371.1;Parent=Phyra81371;constitutive=1;rank=1 scaffold_59 . repeat_region 150198 150284 . ? . description=dust scaffold_59 ensembl protein_coding_gene 152398 153894 . + . ID=Phyra81372;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000036;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 152398 153894 . + . ID=Phyra81372;Parent=Phyra81372;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 152398 153894 . + 0 ID=Phyra81372;Parent=Phyra81372;rank=1 scaffold_59 . exon 152398 153894 . + . ID=Phyra81372.1;Parent=Phyra81372;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 155230 156729 . + . ID=Phyra81373;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000037;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 155230 156729 . + . ID=Phyra81373;Parent=Phyra81373;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 155230 156729 . + 0 ID=Phyra81373;Parent=Phyra81373;rank=1 scaffold_59 . exon 155230 156729 . + . ID=Phyra81373.1;Parent=Phyra81373;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 156869 158245 . - . ID=Phyra81374;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000038;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 156869 158245 . - . ID=Phyra81374;Parent=Phyra81374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 156869 158245 . - 0 ID=Phyra81374;Parent=Phyra81374;rank=1 scaffold_59 . exon 156869 158245 . - . ID=Phyra81374.1;Parent=Phyra81374;constitutive=1;rank=1 scaffold_59 . biological_region 162711 162716 0.999 + . logic_name=eponine scaffold_59 . biological_region 166541 166548 0.999 - . logic_name=eponine scaffold_59 . biological_region 166569 166570 0.999 - . logic_name=eponine scaffold_59 . biological_region 166731 166737 0.999 + . logic_name=eponine scaffold_59 ensembl protein_coding_gene 158749 159718 . + . ID=Phyra81375;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000039;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 158749 159718 . + . ID=Phyra81375;Parent=Phyra81375;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 158749 158936 . + 0 ID=Phyra81375;Parent=Phyra81375;rank=1 scaffold_59 . exon 158749 158936 . + . ID=Phyra81375.1;Parent=Phyra81375;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 159039 159056 . + 0 ID=Phyra81375;Parent=Phyra81375;rank=2 scaffold_59 . exon 159039 159056 . + . ID=Phyra81375.2;Parent=Phyra81375;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_59 . CDS 159098 159188 . + 0 ID=Phyra81375;Parent=Phyra81375;rank=3 scaffold_59 . exon 159098 159188 . + . ID=Phyra81375.3;Parent=Phyra81375;constitutive=1;ensembl_phase=2;rank=3 scaffold_59 . CDS 159262 159307 . + 0 ID=Phyra81375;Parent=Phyra81375;rank=4 scaffold_59 . exon 159262 159307 . + . ID=Phyra81375.4;Parent=Phyra81375;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_59 . CDS 159376 159508 . + 0 ID=Phyra81375;Parent=Phyra81375;rank=5 scaffold_59 . exon 159376 159508 . + . ID=Phyra81375.5;Parent=Phyra81375;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_59 . CDS 159571 159718 . + 0 ID=Phyra81375;Parent=Phyra81375;rank=6 scaffold_59 . exon 159571 159718 . + . ID=Phyra81375.6;Parent=Phyra81375;constitutive=1;ensembl_phase=2;rank=6 scaffold_59 ensembl protein_coding_gene 159891 161128 . - . ID=Phyra81376;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000040;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 159891 161128 . - . ID=Phyra81376;Parent=Phyra81376;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 159891 159939 . - 0 ID=Phyra81376;Parent=Phyra81376;rank=6 scaffold_59 . exon 159891 159939 . - . ID=Phyra81376.6;Parent=Phyra81376;constitutive=1;ensembl_phase=2;rank=6 scaffold_59 . CDS 160012 160163 . - 0 ID=Phyra81376;Parent=Phyra81376;rank=5 scaffold_59 . exon 160012 160163 . - . ID=Phyra81376.5;Parent=Phyra81376;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_59 . CDS 160241 160615 . - 0 ID=Phyra81376;Parent=Phyra81376;rank=4 scaffold_59 . exon 160241 160615 . - . ID=Phyra81376.4;Parent=Phyra81376;constitutive=1;rank=4 scaffold_59 . CDS 160705 160865 . - 0 ID=Phyra81376;Parent=Phyra81376;rank=3 scaffold_59 . exon 160705 160865 . - . ID=Phyra81376.3;Parent=Phyra81376;constitutive=1;ensembl_phase=1;rank=3 scaffold_59 . CDS 160939 160963 . - 0 ID=Phyra81376;Parent=Phyra81376;rank=2 scaffold_59 . exon 160939 160963 . - . ID=Phyra81376.2;Parent=Phyra81376;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_59 . CDS 161090 161128 . - 0 ID=Phyra81376;Parent=Phyra81376;rank=1 scaffold_59 . exon 161090 161128 . - . ID=Phyra81376.1;Parent=Phyra81376;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 161303 163032 . - . ID=Phyra81377;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000041;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 161303 163032 . - . ID=Phyra81377;Parent=Phyra81377;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 161303 161419 . - 0 ID=Phyra81377;Parent=Phyra81377;rank=6 scaffold_59 . exon 161303 161419 . - . ID=Phyra81377.6;Parent=Phyra81377;constitutive=1;rank=6 scaffold_59 . CDS 161464 161709 . - 0 ID=Phyra81377;Parent=Phyra81377;rank=5 scaffold_59 . exon 161464 161709 . - . ID=Phyra81377.5;Parent=Phyra81377;constitutive=1;rank=5 scaffold_59 . CDS 161759 162106 . - 0 ID=Phyra81377;Parent=Phyra81377;rank=4 scaffold_59 . exon 161759 162106 . - . ID=Phyra81377.4;Parent=Phyra81377;constitutive=1;rank=4 scaffold_59 . CDS 162238 162366 . - 0 ID=Phyra81377;Parent=Phyra81377;rank=3 scaffold_59 . exon 162238 162366 . - . ID=Phyra81377.3;Parent=Phyra81377;constitutive=1;rank=3 scaffold_59 . CDS 162386 162477 . - 0 ID=Phyra81377;Parent=Phyra81377;rank=2 scaffold_59 . exon 162386 162477 . - . ID=Phyra81377.2;Parent=Phyra81377;constitutive=1;ensembl_phase=1;rank=2 scaffold_59 . CDS 162699 163032 . - 0 ID=Phyra81377;Parent=Phyra81377;rank=1 scaffold_59 . exon 162699 163032 . - . ID=Phyra81377.1;Parent=Phyra81377;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 ensembl protein_coding_gene 166990 168639 . + . ID=Phyra81378;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000042;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 166990 168639 . + . ID=Phyra81378;Parent=Phyra81378;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 166990 168639 . + 0 ID=Phyra81378;Parent=Phyra81378;rank=1 scaffold_59 . exon 166990 168639 . + . ID=Phyra81378.1;Parent=Phyra81378;constitutive=1;rank=1 scaffold_59 . repeat_region 173263 173270 . ? . description=dust scaffold_59 . repeat_region 173591 173632 . ? . description=dust scaffold_59 . repeat_region 175958 175999 . ? . description=trf scaffold_59 ensembl protein_coding_gene 168873 172344 . - . ID=Phyra71904;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_59000005;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 168873 172344 . - . ID=Phyra71904;Parent=Phyra71904;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 168873 168914 . - 0 ID=Phyra71904;Parent=Phyra71904;rank=11 scaffold_59 . exon 168873 168914 . - . ID=Phyra71904.11;Parent=Phyra71904;constitutive=1;rank=11 scaffold_59 . CDS 168939 169391 . - 0 ID=Phyra71904;Parent=Phyra71904;rank=10 scaffold_59 . exon 168939 169391 . - . ID=Phyra71904.10;Parent=Phyra71904;constitutive=1;rank=10 scaffold_59 . CDS 169469 169669 . - 0 ID=Phyra71904;Parent=Phyra71904;rank=9 scaffold_59 . exon 169469 169669 . - . ID=Phyra71904.9;Parent=Phyra71904;constitutive=1;rank=9 scaffold_59 . CDS 169746 169916 . - 0 ID=Phyra71904;Parent=Phyra71904;rank=8 scaffold_59 . exon 169746 169916 . - . ID=Phyra71904.8;Parent=Phyra71904;constitutive=1;rank=8 scaffold_59 . CDS 169948 170057 . - 0 ID=Phyra71904;Parent=Phyra71904;rank=7 scaffold_59 . exon 169948 170057 . - . ID=Phyra71904.7;Parent=Phyra71904;constitutive=1;ensembl_phase=1;rank=7 scaffold_59 . CDS 170094 170750 . - 0 ID=Phyra71904;Parent=Phyra71904;rank=6 scaffold_59 . exon 170094 170750 . - . ID=Phyra71904.6;Parent=Phyra71904;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_59 . CDS 170829 171087 . - 0 ID=Phyra71904;Parent=Phyra71904;rank=5 scaffold_59 . exon 170829 171087 . - . ID=Phyra71904.5;Parent=Phyra71904;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_59 . CDS 171161 171556 . - 0 ID=Phyra71904;Parent=Phyra71904;rank=4 scaffold_59 . exon 171161 171556 . - . ID=Phyra71904.4;Parent=Phyra71904;constitutive=1;rank=4 scaffold_59 . CDS 171637 171732 . - 0 ID=Phyra71904;Parent=Phyra71904;rank=3 scaffold_59 . exon 171637 171732 . - . ID=Phyra71904.3;Parent=Phyra71904;constitutive=1;rank=3 scaffold_59 . CDS 171850 172094 . - 0 ID=Phyra71904;Parent=Phyra71904;rank=2 scaffold_59 . exon 171850 172094 . - . ID=Phyra71904.2;Parent=Phyra71904;constitutive=1;ensembl_phase=1;rank=2 scaffold_59 . CDS 172152 172344 . - 0 ID=Phyra71904;Parent=Phyra71904;rank=1 scaffold_59 . exon 172152 172344 . - . ID=Phyra71904.1;Parent=Phyra71904;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 ensembl protein_coding_gene 172699 173046 . + . ID=Phyra71905;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_59000006;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 172699 173046 . + . ID=Phyra71905;Parent=Phyra71905;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 172699 173046 . + 0 ID=Phyra71905;Parent=Phyra71905;rank=1 scaffold_59 . exon 172699 173046 . + . ID=Phyra71905.1;Parent=Phyra71905;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 173861 174172 . - . ID=Phyra71906;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_59000007;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 173861 174172 . - . ID=Phyra71906;Parent=Phyra71906;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 173861 174172 . - 0 ID=Phyra71906;Parent=Phyra71906;rank=1 scaffold_59 . exon 173861 174172 . - . ID=Phyra71906.1;Parent=Phyra71906;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 174525 174935 . + . ID=Phyra71907;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_59000008;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 174525 174935 . + . ID=Phyra71907;Parent=Phyra71907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 174525 174935 . + 0 ID=Phyra71907;Parent=Phyra71907;rank=1 scaffold_59 . exon 174525 174935 . + . ID=Phyra71907.1;Parent=Phyra71907;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 176119 176430 . + . ID=Phyra71908;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_59000009;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 176119 176430 . + . ID=Phyra71908;Parent=Phyra71908;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 176119 176430 . + 0 ID=Phyra71908;Parent=Phyra71908;rank=1 scaffold_59 . exon 176119 176430 . + . ID=Phyra71908.1;Parent=Phyra71908;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 176890 178248 . - . ID=Phyra81384;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000048;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 176890 178248 . - . ID=Phyra81384;Parent=Phyra81384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 176890 178248 . - 0 ID=Phyra81384;Parent=Phyra81384;rank=1 scaffold_59 . exon 176890 178248 . - . ID=Phyra81384.1;Parent=Phyra81384;constitutive=1;rank=1 scaffold_59 . biological_region 180219 180220 0.999 + . logic_name=eponine scaffold_59 ensembl protein_coding_gene 179372 182158 . + . ID=Phyra81385;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000049;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 179372 182158 . + . ID=Phyra81385;Parent=Phyra81385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 179372 182158 . + 0 ID=Phyra81385;Parent=Phyra81385;rank=1 scaffold_59 . exon 179372 182158 . + . ID=Phyra81385.1;Parent=Phyra81385;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 182572 185814 . - . ID=Phyra81386;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000050;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 182572 185814 . - . ID=Phyra81386;Parent=Phyra81386;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 182572 185814 . - 0 ID=Phyra81386;Parent=Phyra81386;rank=1 scaffold_59 . exon 182572 185814 . - . ID=Phyra81386.1;Parent=Phyra81386;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 187555 189017 . - . ID=Phyra95980;biotype=protein_coding;external_name=C_scaffold_59000028;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 187555 189017 . - . ID=Phyra95980;Parent=Phyra95980;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 187555 187713 . - 0 ID=Phyra95980;Parent=Phyra95980;rank=6 scaffold_59 . exon 187555 187713 . - . ID=Phyra95980.6;Parent=Phyra95980;constitutive=1;rank=6 scaffold_59 . CDS 188127 188242 . - 0 ID=Phyra95980;Parent=Phyra95980;rank=5 scaffold_59 . exon 188127 188242 . - . ID=Phyra95980.5;Parent=Phyra95980;constitutive=1;ensembl_phase=1;rank=5 scaffold_59 . CDS 188312 188527 . - 0 ID=Phyra95980;Parent=Phyra95980;rank=4 scaffold_59 . exon 188312 188527 . - . ID=Phyra95980.4;Parent=Phyra95980;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_59 . CDS 188590 188785 . - 0 ID=Phyra95980;Parent=Phyra95980;rank=3 scaffold_59 . CDS 188845 188951 . - 0 ID=Phyra95980;Parent=Phyra95980;rank=2 scaffold_59 . CDS 188990 189017 . - 0 ID=Phyra95980;Parent=Phyra95980;rank=1 scaffold_59 . repeat_region 193753 193793 . ? . description=trf scaffold_59 . repeat_region 193764 193784 . ? . description=trf scaffold_59 . exon 188590 188785 . - . ID=Phyra95980.3;Parent=Phyra95980;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_59 . exon 188845 188951 . - . ID=Phyra95980.2;Parent=Phyra95980;constitutive=1;ensembl_phase=1;rank=2 scaffold_59 . exon 188990 189017 . - . ID=Phyra95980.1;Parent=Phyra95980;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 ensembl protein_coding_gene 189189 190687 . + . ID=Phyra95981;biotype=protein_coding;external_name=C_scaffold_59000029;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 189189 190687 . + . ID=Phyra95981;Parent=Phyra95981;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 189189 189311 . + 0 ID=Phyra95981;Parent=Phyra95981;rank=1 scaffold_59 . exon 189189 189311 . + . ID=Phyra95981.1;Parent=Phyra95981;constitutive=1;rank=1 scaffold_59 . CDS 189412 189524 . + 0 ID=Phyra95981;Parent=Phyra95981;rank=2 scaffold_59 . exon 189412 189524 . + . ID=Phyra95981.2;Parent=Phyra95981;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_59 . CDS 189597 189660 . + 0 ID=Phyra95981;Parent=Phyra95981;rank=3 scaffold_59 . exon 189597 189660 . + . ID=Phyra95981.3;Parent=Phyra95981;constitutive=1;ensembl_phase=2;rank=3 scaffold_59 . CDS 189723 189798 . + 0 ID=Phyra95981;Parent=Phyra95981;rank=4 scaffold_59 . exon 189723 189798 . + . ID=Phyra95981.4;Parent=Phyra95981;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_59 . CDS 189893 189947 . + 0 ID=Phyra95981;Parent=Phyra95981;rank=5 scaffold_59 . exon 189893 189947 . + . ID=Phyra95981.5;Parent=Phyra95981;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_59 . CDS 190017 190086 . + 0 ID=Phyra95981;Parent=Phyra95981;rank=6 scaffold_59 . exon 190017 190086 . + . ID=Phyra95981.6;Parent=Phyra95981;constitutive=1;ensembl_phase=2;rank=6 scaffold_59 . CDS 190156 190308 . + 0 ID=Phyra95981;Parent=Phyra95981;rank=7 scaffold_59 . exon 190156 190308 . + . ID=Phyra95981.7;Parent=Phyra95981;constitutive=1;rank=7 scaffold_59 . CDS 190394 190467 . + 0 ID=Phyra95981;Parent=Phyra95981;rank=8 scaffold_59 . exon 190394 190467 . + . ID=Phyra95981.8;Parent=Phyra95981;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_59 . CDS 190573 190687 . + 0 ID=Phyra95981;Parent=Phyra95981;rank=9 scaffold_59 . exon 190573 190687 . + . ID=Phyra95981.9;Parent=Phyra95981;constitutive=1;ensembl_phase=2;rank=9 scaffold_59 ensembl protein_coding_gene 190920 191881 . + . ID=Phyra95984;biotype=protein_coding;external_name=C_scaffold_59000032;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 190920 191881 . + . ID=Phyra95984;Parent=Phyra95984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 190920 191316 . + 0 ID=Phyra95984;Parent=Phyra95984;rank=1 scaffold_59 . exon 190920 191316 . + . ID=Phyra95984.1;Parent=Phyra95984;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 . CDS 191444 191569 . + 0 ID=Phyra95984;Parent=Phyra95984;rank=2 scaffold_59 . exon 191444 191569 . + . ID=Phyra95984.2;Parent=Phyra95984;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_59 . CDS 191856 191881 . + 0 ID=Phyra95984;Parent=Phyra95984;rank=3 scaffold_59 . exon 191856 191881 . + . ID=Phyra95984.3;Parent=Phyra95984;constitutive=1;ensembl_phase=1;rank=3 scaffold_59 ensembl protein_coding_gene 192030 194494 . - . ID=Phyra95985;biotype=protein_coding;external_name=C_scaffold_59000033;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 192030 194494 . - . ID=Phyra95985;Parent=Phyra95985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 192030 192150 . - 0 ID=Phyra95985;Parent=Phyra95985;rank=9 scaffold_59 . exon 192030 192150 . - . ID=Phyra95985.9;Parent=Phyra95985;constitutive=1;ensembl_phase=2;rank=9 scaffold_59 . CDS 192227 192408 . - 0 ID=Phyra95985;Parent=Phyra95985;rank=8 scaffold_59 . exon 192227 192408 . - . ID=Phyra95985.8;Parent=Phyra95985;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_59 . CDS 192433 192493 . - 0 ID=Phyra95985;Parent=Phyra95985;rank=7 scaffold_59 . exon 192433 192493 . - . ID=Phyra95985.7;Parent=Phyra95985;constitutive=1;ensembl_phase=2;rank=7 scaffold_59 . CDS 192567 192647 . - 0 ID=Phyra95985;Parent=Phyra95985;rank=6 scaffold_59 . exon 192567 192647 . - . ID=Phyra95985.6;Parent=Phyra95985;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_59 . CDS 192727 193159 . - 0 ID=Phyra95985;Parent=Phyra95985;rank=5 scaffold_59 . exon 192727 193159 . - . ID=Phyra95985.5;Parent=Phyra95985;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_59 . CDS 193427 193604 . - 0 ID=Phyra95985;Parent=Phyra95985;rank=4 scaffold_59 . exon 193427 193604 . - . ID=Phyra95985.4;Parent=Phyra95985;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_59 . CDS 193686 193873 . - 0 ID=Phyra95985;Parent=Phyra95985;rank=3 scaffold_59 . exon 193686 193873 . - . ID=Phyra95985.3;Parent=Phyra95985;constitutive=1;ensembl_phase=1;rank=3 scaffold_59 . CDS 194161 194334 . - 0 ID=Phyra95985;Parent=Phyra95985;rank=2 scaffold_59 . exon 194161 194334 . - . ID=Phyra95985.2;Parent=Phyra95985;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_59 . CDS 194386 194494 . - 0 ID=Phyra95985;Parent=Phyra95985;rank=1 scaffold_59 . exon 194386 194494 . - . ID=Phyra95985.1;Parent=Phyra95985;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 ensembl protein_coding_gene 195057 197893 . - . ID=Phyra95988;biotype=protein_coding;external_name=C_scaffold_59000036;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 195057 197893 . - . ID=Phyra95988;Parent=Phyra95988;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 195057 195641 . - 0 ID=Phyra95988;Parent=Phyra95988;rank=7 scaffold_59 . exon 195057 195641 . - . ID=Phyra95988.7;Parent=Phyra95988;constitutive=1;rank=7 scaffold_59 . CDS 195717 195804 . - 0 ID=Phyra95988;Parent=Phyra95988;rank=6 scaffold_59 . exon 195717 195804 . - . ID=Phyra95988.6;Parent=Phyra95988;constitutive=1;ensembl_phase=2;rank=6 scaffold_59 . CDS 195876 196534 . - 0 ID=Phyra95988;Parent=Phyra95988;rank=5 scaffold_59 . exon 195876 196534 . - . ID=Phyra95988.5;Parent=Phyra95988;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_59 . CDS 196736 196905 . - 0 ID=Phyra95988;Parent=Phyra95988;rank=4 scaffold_59 . exon 196736 196905 . - . ID=Phyra95988.4;Parent=Phyra95988;constitutive=1;ensembl_phase=1;rank=4 scaffold_59 . CDS 197056 197283 . - 0 ID=Phyra95988;Parent=Phyra95988;rank=3 scaffold_59 . exon 197056 197283 . - . ID=Phyra95988.3;Parent=Phyra95988;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_59 . CDS 197311 197542 . - 0 ID=Phyra95988;Parent=Phyra95988;rank=2 scaffold_59 . exon 197311 197542 . - . ID=Phyra95988.2;Parent=Phyra95988;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_59 . CDS 197615 197893 . - 0 ID=Phyra95988;Parent=Phyra95988;rank=1 scaffold_59 . exon 197615 197893 . - . ID=Phyra95988.1;Parent=Phyra95988;constitutive=1;rank=1 scaffold_59 . repeat_region 198532 198543 . ? . description=dust scaffold_59 . biological_region 206868 206869 0.999 - . logic_name=eponine scaffold_59 . biological_region 207213 207219 0.999 - . logic_name=eponine scaffold_59 ensembl protein_coding_gene 204422 207250 . - . ID=Phyra95989;biotype=protein_coding;external_name=C_scaffold_59000037;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 204422 207250 . - . ID=Phyra95989;Parent=Phyra95989;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 204422 204442 . - 0 ID=Phyra95989;Parent=Phyra95989;rank=9 scaffold_59 . exon 204422 204442 . - . ID=Phyra95989.9;Parent=Phyra95989;constitutive=1;rank=9 scaffold_59 . CDS 204517 204635 . - 0 ID=Phyra95989;Parent=Phyra95989;rank=8 scaffold_59 . exon 204517 204635 . - . ID=Phyra95989.8;Parent=Phyra95989;constitutive=1;ensembl_phase=1;rank=8 scaffold_59 . CDS 204816 204884 . - 0 ID=Phyra95989;Parent=Phyra95989;rank=7 scaffold_59 . exon 204816 204884 . - . ID=Phyra95989.7;Parent=Phyra95989;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_59 . CDS 204915 204991 . - 0 ID=Phyra95989;Parent=Phyra95989;rank=6 scaffold_59 . exon 204915 204991 . - . ID=Phyra95989.6;Parent=Phyra95989;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_59 . CDS 205264 205529 . - 0 ID=Phyra95989;Parent=Phyra95989;rank=5 scaffold_59 . exon 205264 205529 . - . ID=Phyra95989.5;Parent=Phyra95989;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_59 . CDS 205592 205868 . - 0 ID=Phyra95989;Parent=Phyra95989;rank=4 scaffold_59 . exon 205592 205868 . - . ID=Phyra95989.4;Parent=Phyra95989;constitutive=1;ensembl_phase=2;rank=4 scaffold_59 . CDS 206026 206076 . - 0 ID=Phyra95989;Parent=Phyra95989;rank=3 scaffold_59 . exon 206026 206076 . - . ID=Phyra95989.3;Parent=Phyra95989;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_59 . CDS 206225 206289 . - 0 ID=Phyra95989;Parent=Phyra95989;rank=2 scaffold_59 . exon 206225 206289 . - . ID=Phyra95989.2;Parent=Phyra95989;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_59 . CDS 206327 207250 . - 0 ID=Phyra95989;Parent=Phyra95989;rank=1 scaffold_59 . exon 206327 207250 . - . ID=Phyra95989.1;Parent=Phyra95989;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 207392 208489 . + . ID=Phyra95992;biotype=protein_coding;external_name=C_scaffold_59000040;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 207392 208489 . + . ID=Phyra95992;Parent=Phyra95992;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 207392 208489 . + 0 ID=Phyra95992;Parent=Phyra95992;rank=1 scaffold_59 . exon 207392 208489 . + . ID=Phyra95992.1;Parent=Phyra95992;constitutive=1;rank=1 scaffold_59 . repeat_region 217594 217620 . ? . description=trf scaffold_59 ensembl protein_coding_gene 217930 219861 . + . ID=Phyra71909;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_59000010;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 217930 219861 . + . ID=Phyra71909;Parent=Phyra71909;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 217930 218042 . + 0 ID=Phyra71909;Parent=Phyra71909;rank=1 scaffold_59 . exon 217930 218042 . + . ID=Phyra71909.1;Parent=Phyra71909;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 218337 218440 . + 0 ID=Phyra71909;Parent=Phyra71909;rank=2 scaffold_59 . CDS 218516 218622 . + 0 ID=Phyra71909;Parent=Phyra71909;rank=3 scaffold_59 . CDS 218693 218825 . + 0 ID=Phyra71909;Parent=Phyra71909;rank=4 scaffold_59 . CDS 218886 219050 . + 0 ID=Phyra71909;Parent=Phyra71909;rank=5 scaffold_59 . CDS 219110 219228 . + 0 ID=Phyra71909;Parent=Phyra71909;rank=6 scaffold_59 . CDS 219316 219861 . + 0 ID=Phyra71909;Parent=Phyra71909;rank=7 scaffold_59 ensembl protein_coding_gene 212973 214336 . + . ID=Phyra81394;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000058;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 212973 214336 . + . ID=Phyra81394;Parent=Phyra81394;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 212973 213024 . + 0 ID=Phyra81394;Parent=Phyra81394;rank=1 scaffold_59 . exon 212973 213024 . + . ID=Phyra81394.1;Parent=Phyra81394;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 . CDS 213092 213357 . + 0 ID=Phyra81394;Parent=Phyra81394;rank=2 scaffold_59 . exon 213092 213357 . + . ID=Phyra81394.2;Parent=Phyra81394;constitutive=1;ensembl_phase=1;rank=2 scaffold_59 . CDS 213429 213550 . + 0 ID=Phyra81394;Parent=Phyra81394;rank=3 scaffold_59 . exon 213429 213550 . + . ID=Phyra81394.3;Parent=Phyra81394;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_59 . CDS 213611 213834 . + 0 ID=Phyra81394;Parent=Phyra81394;rank=4 scaffold_59 . exon 213611 213834 . + . ID=Phyra81394.4;Parent=Phyra81394;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_59 . CDS 213909 214017 . + 0 ID=Phyra81394;Parent=Phyra81394;rank=5 scaffold_59 . exon 213909 214017 . + . ID=Phyra81394.5;Parent=Phyra81394;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_59 . CDS 214081 214198 . + 0 ID=Phyra81394;Parent=Phyra81394;rank=6 scaffold_59 . exon 214081 214198 . + . ID=Phyra81394.6;Parent=Phyra81394;constitutive=1;ensembl_phase=2;rank=6 scaffold_59 . CDS 214274 214336 . + 0 ID=Phyra81394;Parent=Phyra81394;rank=7 scaffold_59 . exon 214274 214336 . + . ID=Phyra81394.7;Parent=Phyra81394;constitutive=1;rank=7 scaffold_59 ensembl protein_coding_gene 208609 210556 . - . ID=Phyra95994;biotype=protein_coding;external_name=C_scaffold_59000042;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 208609 210556 . - . ID=Phyra95994;Parent=Phyra95994;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 208609 208986 . - 0 ID=Phyra95994;Parent=Phyra95994;rank=4 scaffold_59 . exon 208609 208986 . - . ID=Phyra95994.4;Parent=Phyra95994;constitutive=1;rank=4 scaffold_59 . CDS 209288 209433 . - 0 ID=Phyra95994;Parent=Phyra95994;rank=3 scaffold_59 . exon 209288 209433 . - . ID=Phyra95994.3;Parent=Phyra95994;constitutive=1;ensembl_phase=1;rank=3 scaffold_59 . CDS 209755 210178 . - 0 ID=Phyra95994;Parent=Phyra95994;rank=2 scaffold_59 . exon 209755 210178 . - . ID=Phyra95994.2;Parent=Phyra95994;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_59 . CDS 210239 210556 . - 0 ID=Phyra95994;Parent=Phyra95994;rank=1 scaffold_59 . exon 210239 210556 . - . ID=Phyra95994.1;Parent=Phyra95994;constitutive=1;rank=1 scaffold_59 . biological_region 223234 223238 0.999 - . logic_name=eponine scaffold_59 . biological_region 223580 223582 0.999 - . logic_name=eponine scaffold_59 . biological_region 224775 224776 0.999 + . logic_name=eponine scaffold_59 . biological_region 224802 224804 0.999 + . logic_name=eponine scaffold_59 . biological_region 224976 224978 0.999 - . logic_name=eponine scaffold_59 . biological_region 225887 225891 0.999 + . logic_name=eponine scaffold_59 . biological_region 226146 226149 0.999 - . logic_name=eponine scaffold_59 . biological_region 226163 226172 0.999 - . logic_name=eponine scaffold_59 . biological_region 226199 226202 0.999 + . logic_name=eponine scaffold_59 . biological_region 226221 226225 0.999 + . logic_name=eponine scaffold_59 . biological_region 226754 226757 0.999 + . logic_name=eponine scaffold_59 . biological_region 226783 226794 0.999 - . logic_name=eponine scaffold_59 . biological_region 226810 226815 0.999 - . logic_name=eponine scaffold_59 . exon 218337 218440 . + . ID=Phyra71909.2;Parent=Phyra71909;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_59 . exon 218516 218622 . + . ID=Phyra71909.3;Parent=Phyra71909;constitutive=1;ensembl_phase=1;rank=3 scaffold_59 . exon 218693 218825 . + . ID=Phyra71909.4;Parent=Phyra71909;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_59 . exon 218886 219050 . + . ID=Phyra71909.5;Parent=Phyra71909;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_59 . exon 219110 219228 . + . ID=Phyra71909.6;Parent=Phyra71909;constitutive=1;ensembl_phase=1;rank=6 scaffold_59 . exon 219316 219861 . + . ID=Phyra71909.7;Parent=Phyra71909;constitutive=1;rank=7 scaffold_59 ensembl protein_coding_gene 220100 221852 . - . ID=Phyra81396;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000060;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 220100 221852 . - . ID=Phyra81396;Parent=Phyra81396;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 220100 220247 . - 0 ID=Phyra81396;Parent=Phyra81396;rank=5 scaffold_59 . exon 220100 220247 . - . ID=Phyra81396.5;Parent=Phyra81396;constitutive=1;ensembl_phase=2;rank=5 scaffold_59 . CDS 220337 220549 . - 0 ID=Phyra81396;Parent=Phyra81396;rank=4 scaffold_59 . exon 220337 220549 . - . ID=Phyra81396.4;Parent=Phyra81396;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_59 . CDS 220622 220714 . - 0 ID=Phyra81396;Parent=Phyra81396;rank=3 scaffold_59 . exon 220622 220714 . - . ID=Phyra81396.3;Parent=Phyra81396;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_59 . CDS 220787 221689 . - 0 ID=Phyra81396;Parent=Phyra81396;rank=2 scaffold_59 . exon 220787 221689 . - . ID=Phyra81396.2;Parent=Phyra81396;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_59 . CDS 221764 221852 . - 0 ID=Phyra81396;Parent=Phyra81396;rank=1 scaffold_59 . exon 221764 221852 . - . ID=Phyra81396.1;Parent=Phyra81396;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 ensembl protein_coding_gene 222767 224287 . - . ID=Phyra81397;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000061;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 222767 224287 . - . ID=Phyra81397;Parent=Phyra81397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 222767 223766 . - 0 ID=Phyra81397;Parent=Phyra81397;rank=4 scaffold_59 . exon 222767 223766 . - . ID=Phyra81397.4;Parent=Phyra81397;constitutive=1;ensembl_phase=2;rank=4 scaffold_59 . CDS 223831 223863 . - 0 ID=Phyra81397;Parent=Phyra81397;rank=3 scaffold_59 . exon 223831 223863 . - . ID=Phyra81397.3;Parent=Phyra81397;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_59 . CDS 224076 224189 . - 0 ID=Phyra81397;Parent=Phyra81397;rank=2 scaffold_59 . exon 224076 224189 . - . ID=Phyra81397.2;Parent=Phyra81397;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_59 . CDS 224211 224287 . - 0 ID=Phyra81397;Parent=Phyra81397;rank=1 scaffold_59 . exon 224211 224287 . - . ID=Phyra81397.1;Parent=Phyra81397;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 ensembl protein_coding_gene 225769 227160 . + . ID=Phyra81398;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000062;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 225769 227160 . + . ID=Phyra81398;Parent=Phyra81398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 225769 227160 . + 0 ID=Phyra81398;Parent=Phyra81398;rank=1 scaffold_59 . exon 225769 227160 . + . ID=Phyra81398.1;Parent=Phyra81398;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 227382 228663 . + . ID=Phyra81399;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000063;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 227382 228663 . + . ID=Phyra81399;Parent=Phyra81399;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 227382 228596 . + 0 ID=Phyra81399;Parent=Phyra81399;rank=1 scaffold_59 . exon 227382 228596 . + . ID=Phyra81399.1;Parent=Phyra81399;constitutive=1;rank=1 scaffold_59 . CDS 228658 228663 . + 0 ID=Phyra81399;Parent=Phyra81399;rank=2 scaffold_59 . repeat_region 232782 232789 . ? . description=dust scaffold_59 . exon 228658 228663 . + . ID=Phyra81399.2;Parent=Phyra81399;constitutive=1;rank=2 scaffold_59 ensembl protein_coding_gene 232716 234277 . + . ID=Phyra81400;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000064;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 232716 234277 . + . ID=Phyra81400;Parent=Phyra81400;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 232716 233667 . + 0 ID=Phyra81400;Parent=Phyra81400;rank=1 scaffold_59 . exon 232716 233667 . + . ID=Phyra81400.1;Parent=Phyra81400;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 . CDS 233872 234036 . + 0 ID=Phyra81400;Parent=Phyra81400;rank=2 scaffold_59 . exon 233872 234036 . + . ID=Phyra81400.2;Parent=Phyra81400;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_59 . CDS 234255 234277 . + 0 ID=Phyra81400;Parent=Phyra81400;rank=3 scaffold_59 . exon 234255 234277 . + . ID=Phyra81400.3;Parent=Phyra81400;constitutive=1;ensembl_phase=1;rank=3 scaffold_59 ensembl protein_coding_gene 236820 241259 . + . ID=Phyra81401;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000065;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 236820 241259 . + . ID=Phyra81401;Parent=Phyra81401;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 236820 241259 . + 0 ID=Phyra81401;Parent=Phyra81401;rank=1 scaffold_59 . exon 236820 241259 . + . ID=Phyra81401.1;Parent=Phyra81401;constitutive=1;rank=1 scaffold_59 . biological_region 244796 244797 0.999 - . logic_name=eponine scaffold_59 . biological_region 247156 247156 0.999 + . logic_name=eponine scaffold_59 ensembl protein_coding_gene 244881 248454 . - . ID=Phyra95996;biotype=protein_coding;external_name=C_scaffold_59000044;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 244881 248454 . - . ID=Phyra95996;Parent=Phyra95996;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 244881 244909 . - 0 ID=Phyra95996;Parent=Phyra95996;rank=12 scaffold_59 . exon 244881 244909 . - . ID=Phyra95996.12;Parent=Phyra95996;constitutive=1;ensembl_phase=1;rank=12 scaffold_59 . CDS 245020 245123 . - 0 ID=Phyra95996;Parent=Phyra95996;rank=11 scaffold_59 . exon 245020 245123 . - . ID=Phyra95996.11;Parent=Phyra95996;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_59 . CDS 245206 245382 . - 0 ID=Phyra95996;Parent=Phyra95996;rank=10 scaffold_59 . exon 245206 245382 . - . ID=Phyra95996.10;Parent=Phyra95996;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_59 . CDS 245752 245915 . - 0 ID=Phyra95996;Parent=Phyra95996;rank=9 scaffold_59 . exon 245752 245915 . - . ID=Phyra95996.9;Parent=Phyra95996;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_59 . CDS 245946 246137 . - 0 ID=Phyra95996;Parent=Phyra95996;rank=8 scaffold_59 . exon 245946 246137 . - . ID=Phyra95996.8;Parent=Phyra95996;constitutive=1;rank=8 scaffold_59 . CDS 246303 246467 . - 0 ID=Phyra95996;Parent=Phyra95996;rank=7 scaffold_59 . exon 246303 246467 . - . ID=Phyra95996.7;Parent=Phyra95996;constitutive=1;rank=7 scaffold_59 . CDS 246686 246752 . - 0 ID=Phyra95996;Parent=Phyra95996;rank=6 scaffold_59 . exon 246686 246752 . - . ID=Phyra95996.6;Parent=Phyra95996;constitutive=1;ensembl_phase=2;rank=6 scaffold_59 . CDS 247175 247242 . - 0 ID=Phyra95996;Parent=Phyra95996;rank=5 scaffold_59 . exon 247175 247242 . - . ID=Phyra95996.5;Parent=Phyra95996;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_59 . CDS 247310 247510 . - 0 ID=Phyra95996;Parent=Phyra95996;rank=4 scaffold_59 . exon 247310 247510 . - . ID=Phyra95996.4;Parent=Phyra95996;constitutive=1;rank=4 scaffold_59 . CDS 247635 248003 . - 0 ID=Phyra95996;Parent=Phyra95996;rank=3 scaffold_59 . exon 247635 248003 . - . ID=Phyra95996.3;Parent=Phyra95996;constitutive=1;rank=3 scaffold_59 . CDS 248071 248223 . - 0 ID=Phyra95996;Parent=Phyra95996;rank=2 scaffold_59 . CDS 248302 248454 . - 0 ID=Phyra95996;Parent=Phyra95996;rank=1 scaffold_59 . repeat_region 255905 255957 . ? . description=trf scaffold_59 ensembl protein_coding_gene 248694 251275 . - . ID=Phyra81404;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000068;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 248694 251275 . - . ID=Phyra81404;Parent=Phyra81404;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 248694 249402 . - 0 ID=Phyra81404;Parent=Phyra81404;rank=4 scaffold_59 . exon 248694 249402 . - . ID=Phyra81404.4;Parent=Phyra81404;constitutive=1;ensembl_phase=2;rank=4 scaffold_59 . CDS 249490 249818 . - 0 ID=Phyra81404;Parent=Phyra81404;rank=3 scaffold_59 . exon 249490 249818 . - . ID=Phyra81404.3;Parent=Phyra81404;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_59 . CDS 249906 251102 . - 0 ID=Phyra81404;Parent=Phyra81404;rank=2 scaffold_59 . exon 249906 251102 . - . ID=Phyra81404.2;Parent=Phyra81404;constitutive=1;rank=2 scaffold_59 . CDS 251174 251275 . - 0 ID=Phyra81404;Parent=Phyra81404;rank=1 scaffold_59 . exon 251174 251275 . - . ID=Phyra81404.1;Parent=Phyra81404;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 251616 252750 . + . ID=Phyra81405;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000069;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 251616 252750 . + . ID=Phyra81405;Parent=Phyra81405;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 251616 252001 . + 0 ID=Phyra81405;Parent=Phyra81405;rank=1 scaffold_59 . exon 251616 252001 . + . ID=Phyra81405.1;Parent=Phyra81405;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 252072 252113 . + 0 ID=Phyra81405;Parent=Phyra81405;rank=2 scaffold_59 . exon 252072 252113 . + . ID=Phyra81405.2;Parent=Phyra81405;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_59 . CDS 252220 252262 . + 0 ID=Phyra81405;Parent=Phyra81405;rank=3 scaffold_59 . exon 252220 252262 . + . ID=Phyra81405.3;Parent=Phyra81405;constitutive=1;ensembl_phase=2;rank=3 scaffold_59 . CDS 252336 252591 . + 0 ID=Phyra81405;Parent=Phyra81405;rank=4 scaffold_59 . exon 252336 252591 . + . ID=Phyra81405.4;Parent=Phyra81405;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_59 . CDS 252650 252750 . + 0 ID=Phyra81405;Parent=Phyra81405;rank=5 scaffold_59 . exon 252650 252750 . + . ID=Phyra81405.5;Parent=Phyra81405;constitutive=1;ensembl_phase=1;rank=5 scaffold_59 . exon 248071 248223 . - . ID=Phyra95996.2;Parent=Phyra95996;constitutive=1;rank=2 scaffold_59 . exon 248302 248454 . - . ID=Phyra95996.1;Parent=Phyra95996;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 252899 254276 . - . ID=Phyra95998;biotype=protein_coding;external_name=C_scaffold_59000046;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 252899 254276 . - . ID=Phyra95998;Parent=Phyra95998;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 252899 252902 . - 0 ID=Phyra95998;Parent=Phyra95998;rank=7 scaffold_59 . exon 252899 252902 . - . ID=Phyra95998.7;Parent=Phyra95998;constitutive=1;ensembl_phase=2;rank=7 scaffold_59 . CDS 253070 253184 . - 0 ID=Phyra95998;Parent=Phyra95998;rank=6 scaffold_59 . exon 253070 253184 . - . ID=Phyra95998.6;Parent=Phyra95998;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_59 . CDS 253410 253413 . - 0 ID=Phyra95998;Parent=Phyra95998;rank=5 scaffold_59 . exon 253410 253413 . - . ID=Phyra95998.5;Parent=Phyra95998;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_59 . CDS 253533 253643 . - 0 ID=Phyra95998;Parent=Phyra95998;rank=4 scaffold_59 . exon 253533 253643 . - . ID=Phyra95998.4;Parent=Phyra95998;constitutive=1;rank=4 scaffold_59 . CDS 253709 253784 . - 0 ID=Phyra95998;Parent=Phyra95998;rank=3 scaffold_59 . exon 253709 253784 . - . ID=Phyra95998.3;Parent=Phyra95998;constitutive=1;ensembl_phase=2;rank=3 scaffold_59 . CDS 253868 253941 . - 0 ID=Phyra95998;Parent=Phyra95998;rank=2 scaffold_59 . exon 253868 253941 . - . ID=Phyra95998.2;Parent=Phyra95998;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_59 . CDS 254010 254276 . - 0 ID=Phyra95998;Parent=Phyra95998;rank=1 scaffold_59 . exon 254010 254276 . - . ID=Phyra95998.1;Parent=Phyra95998;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 254412 256451 . - . ID=Phyra95999;biotype=protein_coding;external_name=C_scaffold_59000047;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 254412 256451 . - . ID=Phyra95999;Parent=Phyra95999;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 254412 255188 . - 0 ID=Phyra95999;Parent=Phyra95999;rank=5 scaffold_59 . exon 254412 255188 . - . ID=Phyra95999.5;Parent=Phyra95999;constitutive=1;rank=5 scaffold_59 . CDS 255264 255367 . - 0 ID=Phyra95999;Parent=Phyra95999;rank=4 scaffold_59 . exon 255264 255367 . - . ID=Phyra95999.4;Parent=Phyra95999;constitutive=1;ensembl_phase=1;rank=4 scaffold_59 . CDS 255445 255561 . - 0 ID=Phyra95999;Parent=Phyra95999;rank=3 scaffold_59 . exon 255445 255561 . - . ID=Phyra95999.3;Parent=Phyra95999;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_59 . CDS 255642 255754 . - 0 ID=Phyra95999;Parent=Phyra95999;rank=2 scaffold_59 . exon 255642 255754 . - . ID=Phyra95999.2;Parent=Phyra95999;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 255985 256451 . - 0 ID=Phyra95999;Parent=Phyra95999;rank=1 scaffold_59 . exon 255985 256451 . - . ID=Phyra95999.1;Parent=Phyra95999;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . biological_region 264128 264129 0.999 + . logic_name=eponine scaffold_59 . biological_region 264781 264783 0.999 - . logic_name=eponine scaffold_59 . biological_region 264837 264838 0.999 + . logic_name=eponine scaffold_59 . biological_region 264880 264885 0.999 - . logic_name=eponine scaffold_59 . biological_region 264955 264957 0.999 - . logic_name=eponine scaffold_59 . biological_region 265981 265982 0.999 + . logic_name=eponine scaffold_59 ensembl protein_coding_gene 259954 260448 . - . ID=Phyra81408;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000072;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 259954 260448 . - . ID=Phyra81408;Parent=Phyra81408;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 259954 260448 . - 0 ID=Phyra81408;Parent=Phyra81408;rank=1 scaffold_59 . exon 259954 260448 . - . ID=Phyra81408.1;Parent=Phyra81408;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 260706 264948 . + . ID=Phyra81409;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000073;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 260706 264948 . + . ID=Phyra81409;Parent=Phyra81409;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 260706 264493 . + 0 ID=Phyra81409;Parent=Phyra81409;rank=1 scaffold_59 . exon 260706 264493 . + . ID=Phyra81409.1;Parent=Phyra81409;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 264615 264948 . + 0 ID=Phyra81409;Parent=Phyra81409;rank=2 scaffold_59 . exon 264615 264948 . + . ID=Phyra81409.2;Parent=Phyra81409;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 ensembl protein_coding_gene 265252 265575 . + . ID=Phyra81410;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000074;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 265252 265575 . + . ID=Phyra81410;Parent=Phyra81410;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 265252 265575 . + 0 ID=Phyra81410;Parent=Phyra81410;rank=1 scaffold_59 . exon 265252 265575 . + . ID=Phyra81410.1;Parent=Phyra81410;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 265715 269063 . - . ID=Phyra81411;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000075;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 265715 269063 . - . ID=Phyra81411;Parent=Phyra81411;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 265715 266748 . - 0 ID=Phyra81411;Parent=Phyra81411;rank=4 scaffold_59 . exon 265715 266748 . - . ID=Phyra81411.4;Parent=Phyra81411;constitutive=1;ensembl_phase=1;rank=4 scaffold_59 . CDS 266823 267053 . - 0 ID=Phyra81411;Parent=Phyra81411;rank=3 scaffold_59 . exon 266823 267053 . - . ID=Phyra81411.3;Parent=Phyra81411;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_59 . CDS 267161 267995 . - 0 ID=Phyra81411;Parent=Phyra81411;rank=2 scaffold_59 . exon 267161 267995 . - . ID=Phyra81411.2;Parent=Phyra81411;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_59 . CDS 268167 269063 . - 0 ID=Phyra81411;Parent=Phyra81411;rank=1 scaffold_59 . repeat_region 270994 271032 . ? . description=trf scaffold_59 . repeat_region 276838 276853 . ? . description=dust scaffold_59 ensembl protein_coding_gene 274448 275905 . - . ID=Phyra71911;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_59000012;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 274448 275905 . - . ID=Phyra71911;Parent=Phyra71911;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 274448 275905 . - 0 ID=Phyra71911;Parent=Phyra71911;rank=1 scaffold_59 . exon 274448 275905 . - . ID=Phyra71911.1;Parent=Phyra71911;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 277419 278918 . - . ID=Phyra71912;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_59000013;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 277419 278918 . - . ID=Phyra71912;Parent=Phyra71912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 277419 278859 . - 0 ID=Phyra71912;Parent=Phyra71912;rank=2 scaffold_59 . exon 277419 278859 . - . ID=Phyra71912.2;Parent=Phyra71912;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 278881 278918 . - 0 ID=Phyra71912;Parent=Phyra71912;rank=1 scaffold_59 . exon 268167 269063 . - . ID=Phyra81411.1;Parent=Phyra81411;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 269530 270522 . + . ID=Phyra81412;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000076;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 269530 270522 . + . ID=Phyra81412;Parent=Phyra81412;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 269530 270522 . + 0 ID=Phyra81412;Parent=Phyra81412;rank=1 scaffold_59 . exon 269530 270522 . + . ID=Phyra81412.1;Parent=Phyra81412;constitutive=1;rank=1 scaffold_59 . biological_region 278466 278469 0.999 + . logic_name=eponine scaffold_59 . biological_region 278467 278469 0.999 - . logic_name=eponine scaffold_59 . biological_region 278493 278493 0.999 - . logic_name=eponine scaffold_59 . biological_region 278533 278539 0.999 - . logic_name=eponine scaffold_59 . biological_region 281084 281091 0.999 + . logic_name=eponine scaffold_59 . biological_region 281610 281615 0.999 - . logic_name=eponine scaffold_59 . biological_region 282406 282409 0.999 - . logic_name=eponine scaffold_59 . biological_region 285077 285079 0.999 + . logic_name=eponine scaffold_59 . biological_region 286487 286488 0.999 - . logic_name=eponine scaffold_59 . biological_region 286543 286546 0.999 + . logic_name=eponine scaffold_59 . biological_region 286685 286692 0.999 + . logic_name=eponine scaffold_59 . biological_region 286766 286768 0.999 + . logic_name=eponine scaffold_59 . biological_region 286905 286906 0.999 - . logic_name=eponine scaffold_59 . biological_region 287026 287028 0.999 - . logic_name=eponine scaffold_59 . biological_region 287303 287305 0.999 - . logic_name=eponine scaffold_59 . exon 278881 278918 . - . ID=Phyra71912.1;Parent=Phyra71912;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 ensembl protein_coding_gene 283965 285450 . - . ID=Phyra81417;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000081;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 283965 285450 . - . ID=Phyra81417;Parent=Phyra81417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 283965 285303 . - 0 ID=Phyra81417;Parent=Phyra81417;rank=2 scaffold_59 . exon 283965 285303 . - . ID=Phyra81417.2;Parent=Phyra81417;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 285371 285450 . - 0 ID=Phyra81417;Parent=Phyra81417;rank=1 scaffold_59 . exon 285371 285450 . - . ID=Phyra81417.1;Parent=Phyra81417;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 ensembl protein_coding_gene 286547 291149 . + . ID=Phyra81418;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000082;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 286547 291149 . + . ID=Phyra81418;Parent=Phyra81418;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 286547 288145 . + 0 ID=Phyra81418;Parent=Phyra81418;rank=1 scaffold_59 . exon 286547 288145 . + . ID=Phyra81418.1;Parent=Phyra81418;constitutive=1;rank=1 scaffold_59 . CDS 288224 288970 . + 0 ID=Phyra81418;Parent=Phyra81418;rank=2 scaffold_59 . CDS 289046 290242 . + 0 ID=Phyra81418;Parent=Phyra81418;rank=3 scaffold_59 . CDS 290304 290541 . + 0 ID=Phyra81418;Parent=Phyra81418;rank=4 scaffold_59 . CDS 290744 290827 . + 0 ID=Phyra81418;Parent=Phyra81418;rank=5 scaffold_59 . CDS 291028 291149 . + 0 ID=Phyra81418;Parent=Phyra81418;rank=6 scaffold_59 ensembl protein_coding_gene 280481 282007 . - . ID=Phyra96000;biotype=protein_coding;external_name=C_scaffold_59000048;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 280481 282007 . - . ID=Phyra96000;Parent=Phyra96000;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 280481 281455 . - 0 ID=Phyra96000;Parent=Phyra96000;rank=2 scaffold_59 . exon 280481 281455 . - . ID=Phyra96000.2;Parent=Phyra96000;constitutive=1;rank=2 scaffold_59 . CDS 281522 282007 . - 0 ID=Phyra96000;Parent=Phyra96000;rank=1 scaffold_59 . exon 281522 282007 . - . ID=Phyra96000.1;Parent=Phyra96000;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 282290 283839 . + . ID=Phyra96001;biotype=protein_coding;external_name=C_scaffold_59000049;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 282290 283839 . + . ID=Phyra96001;Parent=Phyra96001;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 282290 282515 . + 0 ID=Phyra96001;Parent=Phyra96001;rank=1 scaffold_59 . exon 282290 282515 . + . ID=Phyra96001.1;Parent=Phyra96001;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 . CDS 282613 282773 . + 0 ID=Phyra96001;Parent=Phyra96001;rank=2 scaffold_59 . exon 282613 282773 . + . ID=Phyra96001.2;Parent=Phyra96001;constitutive=1;ensembl_phase=1;rank=2 scaffold_59 . CDS 282903 283291 . + 0 ID=Phyra96001;Parent=Phyra96001;rank=3 scaffold_59 . exon 282903 283291 . + . ID=Phyra96001.3;Parent=Phyra96001;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_59 . CDS 283368 283540 . + 0 ID=Phyra96001;Parent=Phyra96001;rank=4 scaffold_59 . exon 283368 283540 . + . ID=Phyra96001.4;Parent=Phyra96001;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_59 . CDS 283607 283839 . + 0 ID=Phyra96001;Parent=Phyra96001;rank=5 scaffold_59 . exon 283607 283839 . + . ID=Phyra96001.5;Parent=Phyra96001;constitutive=1;ensembl_phase=1;rank=5 scaffold_59 . repeat_region 289211 289263 . ? . description=trf scaffold_59 . repeat_region 289211 289268 . ? . description=trf scaffold_59 . repeat_region 289211 289268 . ? . description=trf scaffold_59 . repeat_region 289211 289268 . ? . description=dust scaffold_59 ensembl protein_coding_gene 294915 295487 . + . ID=Phyra71914;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_59000015;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 294915 295487 . + . ID=Phyra71914;Parent=Phyra71914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 294915 295487 . + 0 ID=Phyra71914;Parent=Phyra71914;rank=1 scaffold_59 . exon 294915 295487 . + . ID=Phyra71914.1;Parent=Phyra71914;constitutive=1;rank=1 scaffold_59 . exon 288224 288970 . + . ID=Phyra81418.2;Parent=Phyra81418;constitutive=1;rank=2 scaffold_59 . exon 289046 290242 . + . ID=Phyra81418.3;Parent=Phyra81418;constitutive=1;rank=3 scaffold_59 . exon 290304 290541 . + . ID=Phyra81418.4;Parent=Phyra81418;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_59 . exon 290744 290827 . + . ID=Phyra81418.5;Parent=Phyra81418;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_59 . exon 291028 291149 . + . ID=Phyra81418.6;Parent=Phyra81418;constitutive=1;ensembl_phase=1;rank=6 scaffold_59 ensembl protein_coding_gene 292552 294801 . - . ID=Phyra81419;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000083;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 292552 294801 . - . ID=Phyra81419;Parent=Phyra81419;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 292552 292810 . - 0 ID=Phyra81419;Parent=Phyra81419;rank=2 scaffold_59 . exon 292552 292810 . - . ID=Phyra81419.2;Parent=Phyra81419;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 292883 294801 . - 0 ID=Phyra81419;Parent=Phyra81419;rank=1 scaffold_59 . exon 292883 294801 . - . ID=Phyra81419.1;Parent=Phyra81419;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 ensembl protein_coding_gene 295675 296177 . + . ID=Phyra81421;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000085;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 295675 296177 . + . ID=Phyra81421;Parent=Phyra81421;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 295675 296049 . + 0 ID=Phyra81421;Parent=Phyra81421;rank=1 scaffold_59 . exon 295675 296049 . + . ID=Phyra81421.1;Parent=Phyra81421;constitutive=1;rank=1 scaffold_59 . CDS 296136 296177 . + 0 ID=Phyra81421;Parent=Phyra81421;rank=2 scaffold_59 . exon 296136 296177 . + . ID=Phyra81421.2;Parent=Phyra81421;constitutive=1;rank=2 scaffold_59 ensembl protein_coding_gene 297026 299313 . - . ID=Phyra96006;biotype=protein_coding;external_name=C_scaffold_59000054;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 297026 299313 . - . ID=Phyra96006;Parent=Phyra96006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 297026 297081 . - 0 ID=Phyra96006;Parent=Phyra96006;rank=9 scaffold_59 . exon 297026 297081 . - . ID=Phyra96006.9;Parent=Phyra96006;constitutive=1;ensembl_phase=1;rank=9 scaffold_59 . CDS 297102 297513 . - 0 ID=Phyra96006;Parent=Phyra96006;rank=8 scaffold_59 . exon 297102 297513 . - . ID=Phyra96006.8;Parent=Phyra96006;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_59 . CDS 297562 297717 . - 0 ID=Phyra96006;Parent=Phyra96006;rank=7 scaffold_59 . CDS 297779 298068 . - 0 ID=Phyra96006;Parent=Phyra96006;rank=6 scaffold_59 . CDS 298090 298339 . - 0 ID=Phyra96006;Parent=Phyra96006;rank=5 scaffold_59 . CDS 298423 298558 . - 0 ID=Phyra96006;Parent=Phyra96006;rank=4 scaffold_59 . CDS 298637 298740 . - 0 ID=Phyra96006;Parent=Phyra96006;rank=3 scaffold_59 . CDS 298774 298836 . - 0 ID=Phyra96006;Parent=Phyra96006;rank=2 scaffold_59 . CDS 298903 299313 . - 0 ID=Phyra96006;Parent=Phyra96006;rank=1 scaffold_59 . biological_region 299439 299439 0.999 + . logic_name=eponine scaffold_59 . biological_region 303125 303129 0.999 + . logic_name=eponine scaffold_59 . biological_region 303270 303271 0.999 + . logic_name=eponine scaffold_59 ensembl protein_coding_gene 299442 300794 . + . ID=Phyra51212;biotype=protein_coding;external_name=gwEuk.59.42.1;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 299442 300794 . + . ID=Phyra51212;Parent=Phyra51212;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 299442 300794 . + 0 ID=Phyra51212;Parent=Phyra51212;rank=1 scaffold_59 . exon 299442 300794 . + . ID=Phyra51212.1;Parent=Phyra51212;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 307142 308919 . - . ID=Phyra71915;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_59000016;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 307142 308919 . - . ID=Phyra71915;Parent=Phyra71915;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 307142 307201 . - 0 ID=Phyra71915;Parent=Phyra71915;rank=5 scaffold_59 . exon 307142 307201 . - . ID=Phyra71915.5;Parent=Phyra71915;constitutive=1;rank=5 scaffold_59 . CDS 307276 307448 . - 0 ID=Phyra71915;Parent=Phyra71915;rank=4 scaffold_59 . exon 307276 307448 . - . ID=Phyra71915.4;Parent=Phyra71915;constitutive=1;ensembl_phase=1;rank=4 scaffold_59 . CDS 307528 308292 . - 0 ID=Phyra71915;Parent=Phyra71915;rank=3 scaffold_59 . CDS 308367 308582 . - 0 ID=Phyra71915;Parent=Phyra71915;rank=2 scaffold_59 . CDS 308649 308919 . - 0 ID=Phyra71915;Parent=Phyra71915;rank=1 scaffold_59 ensembl protein_coding_gene 300892 303426 . - . ID=Phyra81424;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000088;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 300892 303426 . - . ID=Phyra81424;Parent=Phyra81424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 300892 303426 . - 0 ID=Phyra81424;Parent=Phyra81424;rank=1 scaffold_59 . exon 300892 303426 . - . ID=Phyra81424.1;Parent=Phyra81424;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 303528 304368 . + . ID=Phyra81425;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000089;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 303528 304368 . + . ID=Phyra81425;Parent=Phyra81425;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 303528 304283 . + 0 ID=Phyra81425;Parent=Phyra81425;rank=1 scaffold_59 . exon 303528 304283 . + . ID=Phyra81425.1;Parent=Phyra81425;constitutive=1;rank=1 scaffold_59 . CDS 304312 304368 . + 0 ID=Phyra81425;Parent=Phyra81425;rank=2 scaffold_59 . exon 304312 304368 . + . ID=Phyra81425.2;Parent=Phyra81425;constitutive=1;rank=2 scaffold_59 . exon 297562 297717 . - . ID=Phyra96006.7;Parent=Phyra96006;constitutive=1;rank=7 scaffold_59 . exon 297779 298068 . - . ID=Phyra96006.6;Parent=Phyra96006;constitutive=1;ensembl_phase=1;rank=6 scaffold_59 . exon 298090 298339 . - . ID=Phyra96006.5;Parent=Phyra96006;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_59 . exon 298423 298558 . - . ID=Phyra96006.4;Parent=Phyra96006;constitutive=1;ensembl_phase=2;rank=4 scaffold_59 . exon 298637 298740 . - . ID=Phyra96006.3;Parent=Phyra96006;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_59 . exon 298774 298836 . - . ID=Phyra96006.2;Parent=Phyra96006;constitutive=1;rank=2 scaffold_59 . exon 298903 299313 . - . ID=Phyra96006.1;Parent=Phyra96006;constitutive=1;rank=1 scaffold_59 . repeat_region 316352 316375 . ? . description=trf scaffold_59 . exon 307528 308292 . - . ID=Phyra71915.3;Parent=Phyra71915;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_59 . exon 308367 308582 . - . ID=Phyra71915.2;Parent=Phyra71915;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_59 . exon 308649 308919 . - . ID=Phyra71915.1;Parent=Phyra71915;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 ensembl protein_coding_gene 316070 316423 . - . ID=Phyra71916;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_59000017;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 316070 316423 . - . ID=Phyra71916;Parent=Phyra71916;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 316070 316423 . - 0 ID=Phyra71916;Parent=Phyra71916;rank=1 scaffold_59 . exon 316070 316423 . - . ID=Phyra71916.1;Parent=Phyra71916;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 317006 318152 . - . ID=Phyra71917;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_59000018;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 317006 318152 . - . ID=Phyra71917;Parent=Phyra71917;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 317006 317902 . - 0 ID=Phyra71917;Parent=Phyra71917;rank=2 scaffold_59 . exon 317006 317902 . - . ID=Phyra71917.2;Parent=Phyra71917;constitutive=1;rank=2 scaffold_59 . CDS 317982 318152 . - 0 ID=Phyra71917;Parent=Phyra71917;rank=1 scaffold_59 ensembl protein_coding_gene 311809 313155 . + . ID=Phyra81428;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000092;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 311809 313155 . + . ID=Phyra81428;Parent=Phyra81428;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 311809 311906 . + 0 ID=Phyra81428;Parent=Phyra81428;rank=1 scaffold_59 . exon 311809 311906 . + . ID=Phyra81428.1;Parent=Phyra81428;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 311970 312975 . + 0 ID=Phyra81428;Parent=Phyra81428;rank=2 scaffold_59 . exon 311970 312975 . + . ID=Phyra81428.2;Parent=Phyra81428;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 313042 313155 . + 0 ID=Phyra81428;Parent=Phyra81428;rank=3 scaffold_59 . exon 313042 313155 . + . ID=Phyra81428.3;Parent=Phyra81428;constitutive=1;rank=3 scaffold_59 ensembl protein_coding_gene 313403 314826 . - . ID=Phyra81429;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000093;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 313403 314826 . - . ID=Phyra81429;Parent=Phyra81429;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 313403 313734 . - 0 ID=Phyra81429;Parent=Phyra81429;rank=3 scaffold_59 . exon 313403 313734 . - . ID=Phyra81429.3;Parent=Phyra81429;constitutive=1;ensembl_phase=1;rank=3 scaffold_59 . CDS 313822 314674 . - 0 ID=Phyra81429;Parent=Phyra81429;rank=2 scaffold_59 . exon 313822 314674 . - . ID=Phyra81429.2;Parent=Phyra81429;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_59 . CDS 314740 314826 . - 0 ID=Phyra81429;Parent=Phyra81429;rank=1 scaffold_59 . exon 314740 314826 . - . ID=Phyra81429.1;Parent=Phyra81429;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 309197 311374 . + . ID=Phyra96010;biotype=protein_coding;external_name=C_scaffold_59000058;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 309197 311374 . + . ID=Phyra96010;Parent=Phyra96010;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 309197 309436 . + 0 ID=Phyra96010;Parent=Phyra96010;rank=1 scaffold_59 . exon 309197 309436 . + . ID=Phyra96010.1;Parent=Phyra96010;constitutive=1;rank=1 scaffold_59 . CDS 309505 309612 . + 0 ID=Phyra96010;Parent=Phyra96010;rank=2 scaffold_59 . exon 309505 309612 . + . ID=Phyra96010.2;Parent=Phyra96010;constitutive=1;rank=2 scaffold_59 . CDS 309668 309913 . + 0 ID=Phyra96010;Parent=Phyra96010;rank=3 scaffold_59 . exon 309668 309913 . + . ID=Phyra96010.3;Parent=Phyra96010;constitutive=1;rank=3 scaffold_59 . CDS 310098 310187 . + 0 ID=Phyra96010;Parent=Phyra96010;rank=4 scaffold_59 . exon 310098 310187 . + . ID=Phyra96010.4;Parent=Phyra96010;constitutive=1;rank=4 scaffold_59 . CDS 310281 310406 . + 0 ID=Phyra96010;Parent=Phyra96010;rank=5 scaffold_59 . exon 310281 310406 . + . ID=Phyra96010.5;Parent=Phyra96010;constitutive=1;rank=5 scaffold_59 . CDS 310471 310648 . + 0 ID=Phyra96010;Parent=Phyra96010;rank=6 scaffold_59 . exon 310471 310648 . + . ID=Phyra96010.6;Parent=Phyra96010;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_59 . CDS 311111 311200 . + 0 ID=Phyra96010;Parent=Phyra96010;rank=7 scaffold_59 . exon 311111 311200 . + . ID=Phyra96010.7;Parent=Phyra96010;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_59 . CDS 311280 311374 . + 0 ID=Phyra96010;Parent=Phyra96010;rank=8 scaffold_59 . exon 311280 311374 . + . ID=Phyra96010.8;Parent=Phyra96010;constitutive=1;ensembl_phase=1;rank=8 scaffold_59 . biological_region 318802 318807 0.999 + . logic_name=eponine scaffold_59 . biological_region 318824 318824 0.999 + . logic_name=eponine scaffold_59 . biological_region 318891 318895 0.999 - . logic_name=eponine scaffold_59 . repeat_region 323205 323219 . ? . description=dust scaffold_59 . repeat_region 325450 325839 . ? . description=dust scaffold_59 . biological_region 326039 326041 0.999 + . logic_name=eponine scaffold_59 ensembl protein_coding_gene 319542 321802 . - . ID=Phyra51228;biotype=protein_coding;external_name=gwEuk.59.58.1;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 319542 321802 . - . ID=Phyra51228;Parent=Phyra51228;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 319542 319663 . - 0 ID=Phyra51228;Parent=Phyra51228;rank=6 scaffold_59 . exon 319542 319663 . - . ID=Phyra51228.6;Parent=Phyra51228;constitutive=1;ensembl_phase=1;rank=6 scaffold_59 . CDS 319739 319823 . - 0 ID=Phyra51228;Parent=Phyra51228;rank=5 scaffold_59 . exon 319739 319823 . - . ID=Phyra51228.5;Parent=Phyra51228;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_59 . CDS 319882 320502 . - 0 ID=Phyra51228;Parent=Phyra51228;rank=4 scaffold_59 . exon 319882 320502 . - . ID=Phyra51228.4;Parent=Phyra51228;constitutive=1;rank=4 scaffold_59 . CDS 320577 320763 . - 0 ID=Phyra51228;Parent=Phyra51228;rank=3 scaffold_59 . exon 320577 320763 . - . ID=Phyra51228.3;Parent=Phyra51228;constitutive=1;ensembl_phase=2;rank=3 scaffold_59 . CDS 320944 321234 . - 0 ID=Phyra51228;Parent=Phyra51228;rank=2 scaffold_59 . exon 320944 321234 . - . ID=Phyra51228.2;Parent=Phyra51228;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_59 . CDS 321303 321802 . - 0 ID=Phyra51228;Parent=Phyra51228;rank=1 scaffold_59 . exon 321303 321802 . - . ID=Phyra51228.1;Parent=Phyra51228;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . exon 317982 318152 . - . ID=Phyra71917.1;Parent=Phyra71917;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 318934 319431 . + . ID=Phyra81432;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000096;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 318934 319431 . + . ID=Phyra81432;Parent=Phyra81432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 318934 319431 . + 0 ID=Phyra81432;Parent=Phyra81432;rank=1 scaffold_59 . exon 318934 319431 . + . ID=Phyra81432.1;Parent=Phyra81432;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 321948 323063 . + . ID=Phyra81435;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000099;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 321948 323063 . + . ID=Phyra81435;Parent=Phyra81435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 321948 323063 . + 0 ID=Phyra81435;Parent=Phyra81435;rank=1 scaffold_59 . exon 321948 323063 . + . ID=Phyra81435.1;Parent=Phyra81435;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 325871 326191 . + . ID=Phyra81436;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_59000100;logic_name=jgi_phyra1 scaffold_59 ensembl transcript 325871 326191 . + . ID=Phyra81436;Parent=Phyra81436;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_59 . CDS 325871 326191 . + 0 ID=Phyra81436;Parent=Phyra81436;rank=1 scaffold_59 . exon 325871 326191 . + . ID=Phyra81436.1;Parent=Phyra81436;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_60 1 327626 scaffold_60 . repeat_region 3475 3722 . ? . description=dust scaffold_60 . biological_region 4222 4228 0.999 + . logic_name=eponine scaffold_60 ensembl protein_coding_gene 4993 11675 . + . ID=Phyra96011;biotype=protein_coding;external_name=C_scaffold_60000001;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 4993 11675 . + . ID=Phyra96011;Parent=Phyra96011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 4993 5332 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=1 scaffold_60 . exon 4993 5332 . + . ID=Phyra96011.1;Parent=Phyra96011;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 5374 6321 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=2 scaffold_60 . exon 5374 6321 . + . ID=Phyra96011.2;Parent=Phyra96011;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_60 . CDS 6382 6401 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=3 scaffold_60 . exon 6382 6401 . + . ID=Phyra96011.3;Parent=Phyra96011;constitutive=1;ensembl_phase=1;rank=3 scaffold_60 . CDS 6628 6671 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=4 scaffold_60 . exon 6628 6671 . + . ID=Phyra96011.4;Parent=Phyra96011;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_60 . CDS 6697 6701 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=5 scaffold_60 . exon 6697 6701 . + . ID=Phyra96011.5;Parent=Phyra96011;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_60 . CDS 6760 7257 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=6 scaffold_60 . exon 6760 7257 . + . ID=Phyra96011.6;Parent=Phyra96011;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_60 . CDS 7348 7425 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=7 scaffold_60 . exon 7348 7425 . + . ID=Phyra96011.7;Parent=Phyra96011;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_60 . CDS 7549 7629 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=8 scaffold_60 . exon 7549 7629 . + . ID=Phyra96011.8;Parent=Phyra96011;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_60 . CDS 7657 7781 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=9 scaffold_60 . exon 7657 7781 . + . ID=Phyra96011.9;Parent=Phyra96011;constitutive=1;ensembl_phase=1;rank=9 scaffold_60 . CDS 7881 8152 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=10 scaffold_60 . exon 7881 8152 . + . ID=Phyra96011.10;Parent=Phyra96011;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_60 . CDS 8174 8279 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=11 scaffold_60 . exon 8174 8279 . + . ID=Phyra96011.11;Parent=Phyra96011;constitutive=1;ensembl_phase=2;rank=11 scaffold_60 . CDS 8721 8943 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=12 scaffold_60 . exon 8721 8943 . + . ID=Phyra96011.12;Parent=Phyra96011;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_60 . CDS 9274 9390 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=13 scaffold_60 . exon 9274 9390 . + . ID=Phyra96011.13;Parent=Phyra96011;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_60 . CDS 9502 9842 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=14 scaffold_60 . exon 9502 9842 . + . ID=Phyra96011.14;Parent=Phyra96011;constitutive=1;ensembl_phase=1;rank=14 scaffold_60 . CDS 10083 10608 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=15 scaffold_60 . CDS 10642 10979 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=16 scaffold_60 . CDS 11017 11062 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=17 scaffold_60 . CDS 11110 11513 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=18 scaffold_60 . CDS 11580 11675 . + 0 ID=Phyra96011;Parent=Phyra96011;rank=19 scaffold_60 . repeat_region 19226 19307 . + . description=Sola3-2_PS scaffold_60 ensembl protein_coding_gene 12455 13609 . - . ID=Phyra81438;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000002;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 12455 13609 . - . ID=Phyra81438;Parent=Phyra81438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 12455 13609 . - 0 ID=Phyra81438;Parent=Phyra81438;rank=1 scaffold_60 . exon 12455 13609 . - . ID=Phyra81438.1;Parent=Phyra81438;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 16809 20843 . + . ID=Phyra81439;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000003;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 16809 20843 . + . ID=Phyra81439;Parent=Phyra81439;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 16809 19873 . + 0 ID=Phyra81439;Parent=Phyra81439;rank=1 scaffold_60 . exon 16809 19873 . + . ID=Phyra81439.1;Parent=Phyra81439;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . CDS 20038 20155 . + 0 ID=Phyra81439;Parent=Phyra81439;rank=2 scaffold_60 . CDS 20263 20498 . + 0 ID=Phyra81439;Parent=Phyra81439;rank=3 scaffold_60 . CDS 20586 20694 . + 0 ID=Phyra81439;Parent=Phyra81439;rank=4 scaffold_60 . CDS 20763 20843 . + 0 ID=Phyra81439;Parent=Phyra81439;rank=5 scaffold_60 . exon 10083 10608 . + . ID=Phyra96011.15;Parent=Phyra96011;constitutive=1;ensembl_end_phase=1;rank=15 scaffold_60 . exon 10642 10979 . + . ID=Phyra96011.16;Parent=Phyra96011;constitutive=1;ensembl_phase=1;rank=16 scaffold_60 . exon 11017 11062 . + . ID=Phyra96011.17;Parent=Phyra96011;constitutive=1;ensembl_end_phase=1;rank=17 scaffold_60 . exon 11110 11513 . + . ID=Phyra96011.18;Parent=Phyra96011;constitutive=1;ensembl_phase=1;rank=18 scaffold_60 . exon 11580 11675 . + . ID=Phyra96011.19;Parent=Phyra96011;constitutive=1;rank=19 scaffold_60 . biological_region 22567 22569 0.999 + . logic_name=eponine scaffold_60 . biological_region 23119 23123 0.999 + . logic_name=eponine scaffold_60 . biological_region 23921 23924 0.999 - . logic_name=eponine scaffold_60 . biological_region 25772 25773 0.999 - . logic_name=eponine scaffold_60 . biological_region 26625 26628 0.999 + . logic_name=eponine scaffold_60 . exon 20038 20155 . + . ID=Phyra81439.2;Parent=Phyra81439;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . exon 20263 20498 . + . ID=Phyra81439.3;Parent=Phyra81439;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_60 . exon 20586 20694 . + . ID=Phyra81439.4;Parent=Phyra81439;constitutive=1;ensembl_phase=2;rank=4 scaffold_60 . exon 20763 20843 . + . ID=Phyra81439.5;Parent=Phyra81439;constitutive=1;rank=5 scaffold_60 ensembl protein_coding_gene 21059 22724 . - . ID=Phyra81440;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000004;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 21059 22724 . - . ID=Phyra81440;Parent=Phyra81440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 21059 21625 . - 0 ID=Phyra81440;Parent=Phyra81440;rank=6 scaffold_60 . exon 21059 21625 . - . ID=Phyra81440.6;Parent=Phyra81440;constitutive=1;rank=6 scaffold_60 . CDS 21688 21823 . - 0 ID=Phyra81440;Parent=Phyra81440;rank=5 scaffold_60 . exon 21688 21823 . - . ID=Phyra81440.5;Parent=Phyra81440;constitutive=1;ensembl_phase=2;rank=5 scaffold_60 . CDS 21893 21963 . - 0 ID=Phyra81440;Parent=Phyra81440;rank=4 scaffold_60 . exon 21893 21963 . - . ID=Phyra81440.4;Parent=Phyra81440;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_60 . CDS 22028 22136 . - 0 ID=Phyra81440;Parent=Phyra81440;rank=3 scaffold_60 . exon 22028 22136 . - . ID=Phyra81440.3;Parent=Phyra81440;constitutive=1;ensembl_phase=2;rank=3 scaffold_60 . CDS 22198 22418 . - 0 ID=Phyra81440;Parent=Phyra81440;rank=2 scaffold_60 . exon 22198 22418 . - . ID=Phyra81440.2;Parent=Phyra81440;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_60 . CDS 22512 22724 . - 0 ID=Phyra81440;Parent=Phyra81440;rank=1 scaffold_60 . exon 22512 22724 . - . ID=Phyra81440.1;Parent=Phyra81440;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 23008 26949 . - . ID=Phyra81441;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000005;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 23008 26949 . - . ID=Phyra81441;Parent=Phyra81441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 23008 26949 . - 0 ID=Phyra81441;Parent=Phyra81441;rank=1 scaffold_60 . exon 23008 26949 . - . ID=Phyra81441.1;Parent=Phyra81441;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 27802 29087 . + . ID=Phyra81442;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000006;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 27802 29087 . + . ID=Phyra81442;Parent=Phyra81442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 27802 28225 . + 0 ID=Phyra81442;Parent=Phyra81442;rank=1 scaffold_60 . exon 27802 28225 . + . ID=Phyra81442.1;Parent=Phyra81442;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 28290 28408 . + 0 ID=Phyra81442;Parent=Phyra81442;rank=2 scaffold_60 . exon 28290 28408 . + . ID=Phyra81442.2;Parent=Phyra81442;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 . CDS 28476 28961 . + 0 ID=Phyra81442;Parent=Phyra81442;rank=3 scaffold_60 . exon 28476 28961 . + . ID=Phyra81442.3;Parent=Phyra81442;constitutive=1;rank=3 scaffold_60 . CDS 28995 29087 . + 0 ID=Phyra81442;Parent=Phyra81442;rank=4 scaffold_60 . exon 28995 29087 . + . ID=Phyra81442.4;Parent=Phyra81442;constitutive=1;rank=4 scaffold_60 ensembl protein_coding_gene 29481 32825 . - . ID=Phyra81443;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000007;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 29481 32825 . - . ID=Phyra81443;Parent=Phyra81443;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 29481 32825 . - 0 ID=Phyra81443;Parent=Phyra81443;rank=1 scaffold_60 . exon 29481 32825 . - . ID=Phyra81443.1;Parent=Phyra81443;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 33148 35508 . - . ID=Phyra81444;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000008;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 33148 35508 . - . ID=Phyra81444;Parent=Phyra81444;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 33148 35508 . - 0 ID=Phyra81444;Parent=Phyra81444;rank=1 scaffold_60 . exon 33148 35508 . - . ID=Phyra81444.1;Parent=Phyra81444;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 37278 38964 . + . ID=Phyra81445;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000009;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 37278 38964 . + . ID=Phyra81445;Parent=Phyra81445;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 37278 38123 . + 0 ID=Phyra81445;Parent=Phyra81445;rank=1 scaffold_60 . exon 37278 38123 . + . ID=Phyra81445.1;Parent=Phyra81445;constitutive=1;rank=1 scaffold_60 . CDS 38203 38367 . + 0 ID=Phyra81445;Parent=Phyra81445;rank=2 scaffold_60 . exon 38203 38367 . + . ID=Phyra81445.2;Parent=Phyra81445;constitutive=1;rank=2 scaffold_60 . CDS 38431 38559 . + 0 ID=Phyra81445;Parent=Phyra81445;rank=3 scaffold_60 . exon 38431 38559 . + . ID=Phyra81445.3;Parent=Phyra81445;constitutive=1;rank=3 scaffold_60 . CDS 38620 38964 . + 0 ID=Phyra81445;Parent=Phyra81445;rank=4 scaffold_60 . exon 38620 38964 . + . ID=Phyra81445.4;Parent=Phyra81445;constitutive=1;rank=4 scaffold_60 . repeat_region 39799 39823 . ? . description=trf scaffold_60 . biological_region 40072 40077 0.999 + . logic_name=eponine scaffold_60 . biological_region 40160 40165 0.999 + . logic_name=eponine scaffold_60 . repeat_region 40404 40423 . ? . description=trf scaffold_60 . biological_region 41832 41834 0.999 - . logic_name=eponine scaffold_60 . repeat_region 42986 43024 . ? . description=dust scaffold_60 . repeat_region 43182 43227 . ? . description=trf scaffold_60 . repeat_region 43260 43302 . ? . description=trf scaffold_60 . repeat_region 43284 43330 . ? . description=trf scaffold_60 . repeat_region 44387 44476 . ? . description=trf scaffold_60 . repeat_region 44629 44693 . ? . description=trf scaffold_60 . repeat_region 44638 44717 . ? . description=trf scaffold_60 . biological_region 44913 44915 0.999 - . logic_name=eponine scaffold_60 . repeat_region 45866 45897 . ? . description=trf scaffold_60 ensembl protein_coding_gene 39755 41023 . + . ID=Phyra71919;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_60000001;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 39755 41023 . + . ID=Phyra71919;Parent=Phyra71919;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 39755 41023 . + 0 ID=Phyra71919;Parent=Phyra71919;rank=1 scaffold_60 . exon 39755 41023 . + . ID=Phyra71919.1;Parent=Phyra71919;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 41634 42133 . - . ID=Phyra71920;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_60000002;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 41634 42133 . - . ID=Phyra71920;Parent=Phyra71920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 41634 41901 . - 0 ID=Phyra71920;Parent=Phyra71920;rank=2 scaffold_60 . exon 41634 41901 . - . ID=Phyra71920.2;Parent=Phyra71920;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 42039 42133 . - 0 ID=Phyra71920;Parent=Phyra71920;rank=1 scaffold_60 . exon 42039 42133 . - . ID=Phyra71920.1;Parent=Phyra71920;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 ensembl protein_coding_gene 43029 43754 . + . ID=Phyra81448;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000012;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 43029 43754 . + . ID=Phyra81448;Parent=Phyra81448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 43029 43754 . + 0 ID=Phyra81448;Parent=Phyra81448;rank=1 scaffold_60 . exon 43029 43754 . + . ID=Phyra81448.1;Parent=Phyra81448;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 44203 45132 . + . ID=Phyra81449;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000013;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 44203 45132 . + . ID=Phyra81449;Parent=Phyra81449;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 44203 45132 . + 0 ID=Phyra81449;Parent=Phyra81449;rank=1 scaffold_60 . exon 44203 45132 . + . ID=Phyra81449.1;Parent=Phyra81449;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 45789 46379 . + . ID=Phyra81450;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000014;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 45789 46379 . + . ID=Phyra81450;Parent=Phyra81450;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 45789 46379 . + 0 ID=Phyra81450;Parent=Phyra81450;rank=1 scaffold_60 . exon 45789 46379 . + . ID=Phyra81450.1;Parent=Phyra81450;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 46749 47396 . + . ID=Phyra81451;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000015;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 46749 47396 . + . ID=Phyra81451;Parent=Phyra81451;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 46749 47396 . + 0 ID=Phyra81451;Parent=Phyra81451;rank=1 scaffold_60 . exon 46749 47396 . + . ID=Phyra81451.1;Parent=Phyra81451;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 47918 49225 . + . ID=Phyra81452;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000016;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 47918 49225 . + . ID=Phyra81452;Parent=Phyra81452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 47918 49225 . + 0 ID=Phyra81452;Parent=Phyra81452;rank=1 scaffold_60 . exon 47918 49225 . + . ID=Phyra81452.1;Parent=Phyra81452;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 49788 52361 . + . ID=Phyra81453;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000017;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 49788 52361 . + . ID=Phyra81453;Parent=Phyra81453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 49788 52361 . + 0 ID=Phyra81453;Parent=Phyra81453;rank=1 scaffold_60 . exon 49788 52361 . + . ID=Phyra81453.1;Parent=Phyra81453;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 52651 54072 . + . ID=Phyra81454;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000018;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 52651 54072 . + . ID=Phyra81454;Parent=Phyra81454;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 52651 54072 . + 0 ID=Phyra81454;Parent=Phyra81454;rank=1 scaffold_60 . exon 52651 54072 . + . ID=Phyra81454.1;Parent=Phyra81454;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 54764 61880 . + . ID=Phyra81455;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000019;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 54764 61880 . + . ID=Phyra81455;Parent=Phyra81455;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 54764 60496 . + 0 ID=Phyra81455;Parent=Phyra81455;rank=1 scaffold_60 . exon 54764 60496 . + . ID=Phyra81455.1;Parent=Phyra81455;constitutive=1;rank=1 scaffold_60 . CDS 60525 61880 . + 0 ID=Phyra81455;Parent=Phyra81455;rank=2 scaffold_60 . repeat_region 60696 60762 . ? . description=trf scaffold_60 . biological_region 61531 61534 0.999 - . logic_name=eponine scaffold_60 . biological_region 62107 62109 0.999 - . logic_name=eponine scaffold_60 . repeat_region 63922 63970 . ? . description=trf scaffold_60 . repeat_region 64307 64403 . ? . description=trf scaffold_60 . repeat_region 64790 64870 . ? . description=trf scaffold_60 . repeat_region 64798 64856 . ? . description=trf scaffold_60 . repeat_region 64826 65000 . ? . description=trf scaffold_60 . biological_region 66140 66141 0.999 - . logic_name=eponine scaffold_60 . biological_region 66882 66885 0.999 - . logic_name=eponine scaffold_60 . biological_region 67838 67841 0.999 - . logic_name=eponine scaffold_60 . exon 60525 61880 . + . ID=Phyra81455.2;Parent=Phyra81455;constitutive=1;rank=2 scaffold_60 ensembl protein_coding_gene 63527 65572 . + . ID=Phyra81456;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000020;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 63527 65572 . + . ID=Phyra81456;Parent=Phyra81456;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 63527 65572 . + 0 ID=Phyra81456;Parent=Phyra81456;rank=1 scaffold_60 . exon 63527 65572 . + . ID=Phyra81456.1;Parent=Phyra81456;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 65853 67661 . - . ID=Phyra81457;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000021;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 65853 67661 . - . ID=Phyra81457;Parent=Phyra81457;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 65853 67661 . - 0 ID=Phyra81457;Parent=Phyra81457;rank=1 scaffold_60 . exon 65853 67661 . - . ID=Phyra81457.1;Parent=Phyra81457;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 68285 70006 . + . ID=Phyra81458;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000022;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 68285 70006 . + . ID=Phyra81458;Parent=Phyra81458;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 68285 70006 . + 0 ID=Phyra81458;Parent=Phyra81458;rank=1 scaffold_60 . exon 68285 70006 . + . ID=Phyra81458.1;Parent=Phyra81458;constitutive=1;rank=1 scaffold_60 . repeat_region 73416 73446 . ? . description=dust scaffold_60 . repeat_region 78298 78356 . ? . description=dust scaffold_60 ensembl protein_coding_gene 70185 71291 . - . ID=Phyra81459;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000023;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 70185 71291 . - . ID=Phyra81459;Parent=Phyra81459;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 70185 71291 . - 0 ID=Phyra81459;Parent=Phyra81459;rank=1 scaffold_60 . exon 70185 71291 . - . ID=Phyra81459.1;Parent=Phyra81459;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 72851 76536 . - . ID=Phyra81460;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000024;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 72851 76536 . - . ID=Phyra81460;Parent=Phyra81460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 72851 74114 . - 0 ID=Phyra81460;Parent=Phyra81460;rank=2 scaffold_60 . exon 72851 74114 . - . ID=Phyra81460.2;Parent=Phyra81460;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 74549 76536 . - 0 ID=Phyra81460;Parent=Phyra81460;rank=1 scaffold_60 . exon 74549 76536 . - . ID=Phyra81460.1;Parent=Phyra81460;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 ensembl protein_coding_gene 77323 78546 . + . ID=Phyra81461;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000025;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 77323 78546 . + . ID=Phyra81461;Parent=Phyra81461;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 77323 78546 . + 0 ID=Phyra81461;Parent=Phyra81461;rank=1 scaffold_60 . exon 77323 78546 . + . ID=Phyra81461.1;Parent=Phyra81461;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 78882 79427 . - . ID=Phyra81462;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000026;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 78882 79427 . - . ID=Phyra81462;Parent=Phyra81462;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 78882 79427 . - 0 ID=Phyra81462;Parent=Phyra81462;rank=1 scaffold_60 . exon 78882 79427 . - . ID=Phyra81462.1;Parent=Phyra81462;constitutive=1;rank=1 scaffold_60 . biological_region 80165 80168 0.999 + . logic_name=eponine scaffold_60 ensembl protein_coding_gene 86427 87369 . + . ID=Phyra81464;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000028;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 86427 87369 . + . ID=Phyra81464;Parent=Phyra81464;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 86427 86534 . + 0 ID=Phyra81464;Parent=Phyra81464;rank=1 scaffold_60 . exon 86427 86534 . + . ID=Phyra81464.1;Parent=Phyra81464;constitutive=1;rank=1 scaffold_60 . CDS 86893 86976 . + 0 ID=Phyra81464;Parent=Phyra81464;rank=2 scaffold_60 . exon 86893 86976 . + . ID=Phyra81464.2;Parent=Phyra81464;constitutive=1;rank=2 scaffold_60 . CDS 87082 87369 . + 0 ID=Phyra81464;Parent=Phyra81464;rank=3 scaffold_60 . exon 87082 87369 . + . ID=Phyra81464.3;Parent=Phyra81464;constitutive=1;rank=3 scaffold_60 ensembl protein_coding_gene 88328 89230 . + . ID=Phyra81465;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000029;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 88328 89230 . + . ID=Phyra81465;Parent=Phyra81465;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 88328 89230 . + 0 ID=Phyra81465;Parent=Phyra81465;rank=1 scaffold_60 . exon 88328 89230 . + . ID=Phyra81465.1;Parent=Phyra81465;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 79825 81099 . - . ID=Phyra96018;biotype=protein_coding;external_name=C_scaffold_60000008;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 79825 81099 . - . ID=Phyra96018;Parent=Phyra96018;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 79825 80035 . - 0 ID=Phyra96018;Parent=Phyra96018;rank=4 scaffold_60 . exon 79825 80035 . - . ID=Phyra96018.4;Parent=Phyra96018;constitutive=1;ensembl_phase=2;rank=4 scaffold_60 . CDS 80063 80247 . - 0 ID=Phyra96018;Parent=Phyra96018;rank=3 scaffold_60 . exon 80063 80247 . - . ID=Phyra96018.3;Parent=Phyra96018;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_60 . CDS 80371 80722 . - 0 ID=Phyra96018;Parent=Phyra96018;rank=2 scaffold_60 . exon 80371 80722 . - . ID=Phyra96018.2;Parent=Phyra96018;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 80996 81099 . - 0 ID=Phyra96018;Parent=Phyra96018;rank=1 scaffold_60 . exon 80996 81099 . - . ID=Phyra96018.1;Parent=Phyra96018;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . repeat_region 90456 90471 . ? . description=dust scaffold_60 ensembl protein_coding_gene 92262 93416 . - . ID=Phyra81466;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000030;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 92262 93416 . - . ID=Phyra81466;Parent=Phyra81466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 92262 93416 . - 0 ID=Phyra81466;Parent=Phyra81466;rank=1 scaffold_60 . exon 92262 93416 . - . ID=Phyra81466.1;Parent=Phyra81466;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 93657 96333 . - . ID=Phyra81467;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000031;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 93657 96333 . - . ID=Phyra81467;Parent=Phyra81467;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 93657 94688 . - 0 ID=Phyra81467;Parent=Phyra81467;rank=3 scaffold_60 . exon 93657 94688 . - . ID=Phyra81467.3;Parent=Phyra81467;constitutive=1;rank=3 scaffold_60 . CDS 94770 94811 . - 0 ID=Phyra81467;Parent=Phyra81467;rank=2 scaffold_60 . exon 94770 94811 . - . ID=Phyra81467.2;Parent=Phyra81467;constitutive=1;rank=2 scaffold_60 . CDS 95059 96333 . - 0 ID=Phyra81467;Parent=Phyra81467;rank=1 scaffold_60 . exon 95059 96333 . - . ID=Phyra81467.1;Parent=Phyra81467;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 97234 97737 . - . ID=Phyra81468;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000032;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 97234 97737 . - . ID=Phyra81468;Parent=Phyra81468;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 97234 97355 . - 0 ID=Phyra81468;Parent=Phyra81468;rank=3 scaffold_60 . exon 97234 97355 . - . ID=Phyra81468.3;Parent=Phyra81468;constitutive=1;ensembl_phase=1;rank=3 scaffold_60 . CDS 97435 97546 . - 0 ID=Phyra81468;Parent=Phyra81468;rank=2 scaffold_60 . exon 97435 97546 . - . ID=Phyra81468.2;Parent=Phyra81468;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_60 . CDS 97621 97737 . - 0 ID=Phyra81468;Parent=Phyra81468;rank=1 scaffold_60 . exon 97621 97737 . - . ID=Phyra81468.1;Parent=Phyra81468;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 97930 100005 . + . ID=Phyra81469;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000033;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 97930 100005 . + . ID=Phyra81469;Parent=Phyra81469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 97930 97988 . + 0 ID=Phyra81469;Parent=Phyra81469;rank=1 scaffold_60 . exon 97930 97988 . + . ID=Phyra81469.1;Parent=Phyra81469;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . CDS 98063 98181 . + 0 ID=Phyra81469;Parent=Phyra81469;rank=2 scaffold_60 . exon 98063 98181 . + . ID=Phyra81469.2;Parent=Phyra81469;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 98243 100005 . + 0 ID=Phyra81469;Parent=Phyra81469;rank=3 scaffold_60 . exon 98243 100005 . + . ID=Phyra81469.3;Parent=Phyra81469;constitutive=1;ensembl_phase=1;rank=3 scaffold_60 . repeat_region 100921 100961 . ? . description=trf scaffold_60 . biological_region 101457 101462 0.999 - . logic_name=eponine scaffold_60 . biological_region 101773 101778 0.999 - . logic_name=eponine scaffold_60 . biological_region 101804 101807 0.999 - . logic_name=eponine scaffold_60 . biological_region 101859 101865 0.999 - . logic_name=eponine scaffold_60 . biological_region 101917 101917 0.999 - . logic_name=eponine scaffold_60 . biological_region 105860 105862 0.999 + . logic_name=eponine scaffold_60 . biological_region 105890 105892 0.999 + . logic_name=eponine scaffold_60 . biological_region 107407 107413 0.999 + . logic_name=eponine scaffold_60 . biological_region 108839 108839 0.999 + . logic_name=eponine scaffold_60 ensembl protein_coding_gene 101377 106401 . + . ID=Phyra81470;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000034;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 101377 106401 . + . ID=Phyra81470;Parent=Phyra81470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 101377 106401 . + 0 ID=Phyra81470;Parent=Phyra81470;rank=1 scaffold_60 . exon 101377 106401 . + . ID=Phyra81470.1;Parent=Phyra81470;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 106672 107157 . - . ID=Phyra81471;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000035;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 106672 107157 . - . ID=Phyra81471;Parent=Phyra81471;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 106672 107157 . - 0 ID=Phyra81471;Parent=Phyra81471;rank=1 scaffold_60 . exon 106672 107157 . - . ID=Phyra81471.1;Parent=Phyra81471;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 108982 111406 . - . ID=Phyra81472;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000036;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 108982 111406 . - . ID=Phyra81472;Parent=Phyra81472;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 108982 110578 . - 0 ID=Phyra81472;Parent=Phyra81472;rank=4 scaffold_60 . exon 108982 110578 . - . ID=Phyra81472.4;Parent=Phyra81472;constitutive=1;ensembl_phase=2;rank=4 scaffold_60 . CDS 110652 110981 . - 0 ID=Phyra81472;Parent=Phyra81472;rank=3 scaffold_60 . CDS 111048 111110 . - 0 ID=Phyra81472;Parent=Phyra81472;rank=2 scaffold_60 . CDS 111174 111406 . - 0 ID=Phyra81472;Parent=Phyra81472;rank=1 scaffold_60 ensembl protein_coding_gene 116360 118051 . - . ID=Phyra71921;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_60000003;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 116360 118051 . - . ID=Phyra71921;Parent=Phyra71921;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 116360 118051 . - 0 ID=Phyra71921;Parent=Phyra71921;rank=1 scaffold_60 . exon 116360 118051 . - . ID=Phyra71921.1;Parent=Phyra71921;constitutive=1;rank=1 scaffold_60 . exon 110652 110981 . - . ID=Phyra81472.3;Parent=Phyra81472;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_60 . exon 111048 111110 . - . ID=Phyra81472.2;Parent=Phyra81472;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_60 . exon 111174 111406 . - . ID=Phyra81472.1;Parent=Phyra81472;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 ensembl protein_coding_gene 112665 116093 . - . ID=Phyra81473;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000037;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 112665 116093 . - . ID=Phyra81473;Parent=Phyra81473;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 112665 116093 . - 0 ID=Phyra81473;Parent=Phyra81473;rank=1 scaffold_60 . exon 112665 116093 . - . ID=Phyra81473.1;Parent=Phyra81473;constitutive=1;rank=1 scaffold_60 . biological_region 122429 122435 0.999 + . logic_name=eponine scaffold_60 . biological_region 122449 122455 0.999 - . logic_name=eponine scaffold_60 . biological_region 122648 122655 0.999 + . logic_name=eponine scaffold_60 . biological_region 122662 122666 0.999 + . logic_name=eponine scaffold_60 . biological_region 122727 122729 0.999 - . logic_name=eponine scaffold_60 . biological_region 122748 122755 0.999 - . logic_name=eponine scaffold_60 . biological_region 124757 124759 0.999 + . logic_name=eponine scaffold_60 . biological_region 125974 125975 0.999 - . logic_name=eponine scaffold_60 . biological_region 126004 126007 0.999 - . logic_name=eponine scaffold_60 . biological_region 128336 128342 0.999 + . logic_name=eponine scaffold_60 ensembl protein_coding_gene 121259 122410 . - . ID=Phyra51548;biotype=protein_coding;external_name=gwEuk.60.64.1;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 121259 122410 . - . ID=Phyra51548;Parent=Phyra51548;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 121259 122410 . - 0 ID=Phyra51548;Parent=Phyra51548;rank=1 scaffold_60 . exon 121259 122410 . - . ID=Phyra51548.1;Parent=Phyra51548;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 125193 126170 . + . ID=Phyra71923;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_60000005;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 125193 126170 . + . ID=Phyra71923;Parent=Phyra71923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 125193 126170 . + 0 ID=Phyra71923;Parent=Phyra71923;rank=1 scaffold_60 . exon 125193 126170 . + . ID=Phyra71923.1;Parent=Phyra71923;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 126588 130529 . - . ID=Phyra71924;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_60000006;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 126588 130529 . - . ID=Phyra71924;Parent=Phyra71924;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 126588 130073 . - 0 ID=Phyra71924;Parent=Phyra71924;rank=2 scaffold_60 . exon 126588 130073 . - . ID=Phyra71924.2;Parent=Phyra71924;constitutive=1;rank=2 scaffold_60 . CDS 130119 130529 . - 0 ID=Phyra71924;Parent=Phyra71924;rank=1 scaffold_60 ensembl protein_coding_gene 122528 122827 . - . ID=Phyra81476;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000040;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 122528 122827 . - . ID=Phyra81476;Parent=Phyra81476;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 122528 122827 . - 0 ID=Phyra81476;Parent=Phyra81476;rank=1 scaffold_60 . exon 122528 122827 . - . ID=Phyra81476.1;Parent=Phyra81476;constitutive=1;rank=1 scaffold_60 . repeat_region 130238 130245 . ? . description=dust scaffold_60 . repeat_region 132174 132227 . ? . description=trf scaffold_60 . exon 130119 130529 . - . ID=Phyra71924.1;Parent=Phyra71924;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 130785 132977 . + . ID=Phyra81479;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000043;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 130785 132977 . + . ID=Phyra81479;Parent=Phyra81479;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 130785 132977 . + 0 ID=Phyra81479;Parent=Phyra81479;rank=1 scaffold_60 . exon 130785 132977 . + . ID=Phyra81479.1;Parent=Phyra81479;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 133101 134521 . - . ID=Phyra81480;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000044;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 133101 134521 . - . ID=Phyra81480;Parent=Phyra81480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 133101 133280 . - 0 ID=Phyra81480;Parent=Phyra81480;rank=4 scaffold_60 . exon 133101 133280 . - . ID=Phyra81480.4;Parent=Phyra81480;constitutive=1;rank=4 scaffold_60 . CDS 133362 133688 . - 0 ID=Phyra81480;Parent=Phyra81480;rank=3 scaffold_60 . exon 133362 133688 . - . ID=Phyra81480.3;Parent=Phyra81480;constitutive=1;rank=3 scaffold_60 . CDS 133754 133848 . - 0 ID=Phyra81480;Parent=Phyra81480;rank=2 scaffold_60 . exon 133754 133848 . - . ID=Phyra81480.2;Parent=Phyra81480;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 . CDS 133918 134521 . - 0 ID=Phyra81480;Parent=Phyra81480;rank=1 scaffold_60 . exon 133918 134521 . - . ID=Phyra81480.1;Parent=Phyra81480;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 ensembl protein_coding_gene 135383 140288 . + . ID=Phyra96025;biotype=protein_coding;external_name=C_scaffold_60000015;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 135383 140288 . + . ID=Phyra96025;Parent=Phyra96025;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 135383 135504 . + 0 ID=Phyra96025;Parent=Phyra96025;rank=1 scaffold_60 . exon 135383 135504 . + . ID=Phyra96025.1;Parent=Phyra96025;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . CDS 135637 135895 . + 0 ID=Phyra96025;Parent=Phyra96025;rank=2 scaffold_60 . exon 135637 135895 . + . ID=Phyra96025.2;Parent=Phyra96025;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 136145 136403 . + 0 ID=Phyra96025;Parent=Phyra96025;rank=3 scaffold_60 . exon 136145 136403 . + . ID=Phyra96025.3;Parent=Phyra96025;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_60 . CDS 136832 137098 . + 0 ID=Phyra96025;Parent=Phyra96025;rank=4 scaffold_60 . exon 136832 137098 . + . ID=Phyra96025.4;Parent=Phyra96025;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_60 . CDS 137170 137753 . + 0 ID=Phyra96025;Parent=Phyra96025;rank=5 scaffold_60 . exon 137170 137753 . + . ID=Phyra96025.5;Parent=Phyra96025;constitutive=1;ensembl_phase=1;rank=5 scaffold_60 . CDS 137778 138361 . + 0 ID=Phyra96025;Parent=Phyra96025;rank=6 scaffold_60 . exon 137778 138361 . + . ID=Phyra96025.6;Parent=Phyra96025;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_60 . CDS 138428 138700 . + 0 ID=Phyra96025;Parent=Phyra96025;rank=7 scaffold_60 . exon 138428 138700 . + . ID=Phyra96025.7;Parent=Phyra96025;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_60 . CDS 139058 139233 . + 0 ID=Phyra96025;Parent=Phyra96025;rank=8 scaffold_60 . CDS 139629 139911 . + 0 ID=Phyra96025;Parent=Phyra96025;rank=9 scaffold_60 . CDS 140021 140288 . + 0 ID=Phyra96025;Parent=Phyra96025;rank=10 scaffold_60 . biological_region 143130 143132 0.999 + . logic_name=eponine scaffold_60 . biological_region 146046 146052 0.999 - . logic_name=eponine scaffold_60 . biological_region 146544 146549 0.999 + . logic_name=eponine scaffold_60 . biological_region 147967 147975 0.999 - . logic_name=eponine scaffold_60 . biological_region 148025 148029 0.999 + . logic_name=eponine scaffold_60 . biological_region 148059 148060 0.999 + . logic_name=eponine scaffold_60 ensembl protein_coding_gene 141204 142583 . + . ID=Phyra81482;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000046;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 141204 142583 . + . ID=Phyra81482;Parent=Phyra81482;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 141204 142583 . + 0 ID=Phyra81482;Parent=Phyra81482;rank=1 scaffold_60 . exon 141204 142583 . + . ID=Phyra81482.1;Parent=Phyra81482;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 144679 146418 . - . ID=Phyra81483;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000047;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 144679 146418 . - . ID=Phyra81483;Parent=Phyra81483;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 144679 146418 . - 0 ID=Phyra81483;Parent=Phyra81483;rank=1 scaffold_60 . exon 144679 146418 . - . ID=Phyra81483.1;Parent=Phyra81483;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 146609 148213 . + . ID=Phyra81484;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000048;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 146609 148213 . + . ID=Phyra81484;Parent=Phyra81484;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 146609 148213 . + 0 ID=Phyra81484;Parent=Phyra81484;rank=1 scaffold_60 . exon 146609 148213 . + . ID=Phyra81484.1;Parent=Phyra81484;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 148598 149638 . - . ID=Phyra81485;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000049;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 148598 149638 . - . ID=Phyra81485;Parent=Phyra81485;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 148598 149638 . - 0 ID=Phyra81485;Parent=Phyra81485;rank=1 scaffold_60 . exon 148598 149638 . - . ID=Phyra81485.1;Parent=Phyra81485;constitutive=1;rank=1 scaffold_60 . exon 139058 139233 . + . ID=Phyra96025.8;Parent=Phyra96025;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_60 . exon 139629 139911 . + . ID=Phyra96025.9;Parent=Phyra96025;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_60 . exon 140021 140288 . + . ID=Phyra96025.10;Parent=Phyra96025;constitutive=1;ensembl_phase=2;rank=10 scaffold_60 . repeat_region 157945 158007 . ? . description=trf scaffold_60 ensembl protein_coding_gene 153882 154601 . + . ID=Phyra71925;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_60000007;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 153882 154601 . + . ID=Phyra71925;Parent=Phyra71925;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 153882 154601 . + 0 ID=Phyra71925;Parent=Phyra71925;rank=1 scaffold_60 . exon 153882 154601 . + . ID=Phyra71925.1;Parent=Phyra71925;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 150789 153495 . - . ID=Phyra81486;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000050;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 150789 153495 . - . ID=Phyra81486;Parent=Phyra81486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 150789 153275 . - 0 ID=Phyra81486;Parent=Phyra81486;rank=2 scaffold_60 . exon 150789 153275 . - . ID=Phyra81486.2;Parent=Phyra81486;constitutive=1;rank=2 scaffold_60 . CDS 153373 153495 . - 0 ID=Phyra81486;Parent=Phyra81486;rank=1 scaffold_60 . exon 153373 153495 . - . ID=Phyra81486.1;Parent=Phyra81486;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 154799 156597 . - . ID=Phyra81488;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000052;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 154799 156597 . - . ID=Phyra81488;Parent=Phyra81488;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 154799 156120 . - 0 ID=Phyra81488;Parent=Phyra81488;rank=4 scaffold_60 . exon 154799 156120 . - . ID=Phyra81488.4;Parent=Phyra81488;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_60 . CDS 156207 156279 . - 0 ID=Phyra81488;Parent=Phyra81488;rank=3 scaffold_60 . exon 156207 156279 . - . ID=Phyra81488.3;Parent=Phyra81488;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_60 . CDS 156359 156410 . - 0 ID=Phyra81488;Parent=Phyra81488;rank=2 scaffold_60 . exon 156359 156410 . - . ID=Phyra81488.2;Parent=Phyra81488;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_60 . CDS 156496 156597 . - 0 ID=Phyra81488;Parent=Phyra81488;rank=1 scaffold_60 . exon 156496 156597 . - . ID=Phyra81488.1;Parent=Phyra81488;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 158637 160400 . + . ID=Phyra81489;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000053;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 158637 160400 . + . ID=Phyra81489;Parent=Phyra81489;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 158637 160400 . + 0 ID=Phyra81489;Parent=Phyra81489;rank=1 scaffold_60 . exon 158637 160400 . + . ID=Phyra81489.1;Parent=Phyra81489;constitutive=1;rank=1 scaffold_60 . biological_region 160730 160731 0.999 + . logic_name=eponine scaffold_60 . biological_region 163049 163051 0.999 - . logic_name=eponine scaffold_60 . biological_region 163084 163090 0.999 + . logic_name=eponine scaffold_60 . biological_region 163102 163108 0.999 + . logic_name=eponine scaffold_60 . biological_region 163319 163322 0.999 + . logic_name=eponine scaffold_60 . repeat_region 165288 165303 . ? . description=dust scaffold_60 . repeat_region 165370 165377 . ? . description=dust scaffold_60 ensembl pseudogene 163994 164295 . - . ID=Phyra51565;biotype=pseudogene;external_name=gwEuk.60.81.1;logic_name=jgi_phyra1 scaffold_60 ensembl pseudogene 163994 164295 . - . ID=Phyra51565;Parent=Phyra51565;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_60 . exon 163994 164295 . - . ID=Phyra51565.1;Parent=Phyra51565;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 ensembl protein_coding_gene 160635 161744 . - . ID=Phyra81490;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000054;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 160635 161744 . - . ID=Phyra81490;Parent=Phyra81490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 160635 161744 . - 0 ID=Phyra81490;Parent=Phyra81490;rank=1 scaffold_60 . exon 160635 161744 . - . ID=Phyra81490.1;Parent=Phyra81490;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 162167 163567 . - . ID=Phyra81491;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000055;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 162167 163567 . - . ID=Phyra81491;Parent=Phyra81491;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 162167 162754 . - 0 ID=Phyra81491;Parent=Phyra81491;rank=3 scaffold_60 . exon 162167 162754 . - . ID=Phyra81491.3;Parent=Phyra81491;constitutive=1;rank=3 scaffold_60 . CDS 162995 163522 . - 0 ID=Phyra81491;Parent=Phyra81491;rank=2 scaffold_60 . exon 162995 163522 . - . ID=Phyra81491.2;Parent=Phyra81491;constitutive=1;rank=2 scaffold_60 . CDS 163544 163567 . - 0 ID=Phyra81491;Parent=Phyra81491;rank=1 scaffold_60 . exon 163544 163567 . - . ID=Phyra81491.1;Parent=Phyra81491;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 164375 165036 . - . ID=Phyra81492;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000056;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 164375 165036 . - . ID=Phyra81492;Parent=Phyra81492;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 164375 164386 . - 0 ID=Phyra81492;Parent=Phyra81492;rank=2 scaffold_60 . exon 164375 164386 . - . ID=Phyra81492.2;Parent=Phyra81492;constitutive=1;rank=2 scaffold_60 . CDS 164425 165036 . - 0 ID=Phyra81492;Parent=Phyra81492;rank=1 scaffold_60 . exon 164425 165036 . - . ID=Phyra81492.1;Parent=Phyra81492;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 168127 170352 . - . ID=Phyra81495;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000059;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 168127 170352 . - . ID=Phyra81495;Parent=Phyra81495;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 168127 170352 . - 0 ID=Phyra81495;Parent=Phyra81495;rank=1 scaffold_60 . exon 168127 170352 . - . ID=Phyra81495.1;Parent=Phyra81495;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 165356 168056 . + . ID=Phyra96028;biotype=protein_coding;external_name=C_scaffold_60000018;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 165356 168056 . + . ID=Phyra96028;Parent=Phyra96028;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 165356 165494 . + 0 ID=Phyra96028;Parent=Phyra96028;rank=1 scaffold_60 . exon 165356 165494 . + . ID=Phyra96028.1;Parent=Phyra96028;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 165618 165788 . + 0 ID=Phyra96028;Parent=Phyra96028;rank=2 scaffold_60 . exon 165618 165788 . + . ID=Phyra96028.2;Parent=Phyra96028;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_60 . CDS 165865 166411 . + 0 ID=Phyra96028;Parent=Phyra96028;rank=3 scaffold_60 . exon 165865 166411 . + . ID=Phyra96028.3;Parent=Phyra96028;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_60 . CDS 166593 167393 . + 0 ID=Phyra96028;Parent=Phyra96028;rank=4 scaffold_60 . exon 166593 167393 . + . ID=Phyra96028.4;Parent=Phyra96028;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_60 . CDS 167475 167565 . + 0 ID=Phyra96028;Parent=Phyra96028;rank=5 scaffold_60 . exon 167475 167565 . + . ID=Phyra96028.5;Parent=Phyra96028;constitutive=1;ensembl_phase=2;rank=5 scaffold_60 . CDS 167634 167747 . + 0 ID=Phyra96028;Parent=Phyra96028;rank=6 scaffold_60 . exon 167634 167747 . + . ID=Phyra96028.6;Parent=Phyra96028;constitutive=1;rank=6 scaffold_60 . CDS 167811 168056 . + 0 ID=Phyra96028;Parent=Phyra96028;rank=7 scaffold_60 . exon 167811 168056 . + . ID=Phyra96028.7;Parent=Phyra96028;constitutive=1;rank=7 scaffold_60 . repeat_region 170968 171060 . ? . description=trf scaffold_60 . repeat_region 171094 171899 . ? . description=trf scaffold_60 . repeat_region 171605 172064 . ? . description=trf scaffold_60 . repeat_region 171646 172229 . ? . description=trf scaffold_60 . repeat_region 171716 171995 . ? . description=trf scaffold_60 . repeat_region 171716 172392 . ? . description=trf scaffold_60 . repeat_region 171842 172160 . ? . description=trf scaffold_60 . repeat_region 171854 172091 . ? . description=trf scaffold_60 . repeat_region 171950 172229 . ? . description=trf scaffold_60 . repeat_region 172046 172367 . ? . description=trf scaffold_60 . repeat_region 172046 172449 . ? . description=trf scaffold_60 . repeat_region 172184 172392 . ? . description=trf scaffold_60 . repeat_region 172322 172392 . ? . description=trf scaffold_60 . repeat_region 172390 173889 . ? . description=trf scaffold_60 . repeat_region 173980 174042 . ? . description=trf scaffold_60 . repeat_region 173980 174051 . ? . description=trf scaffold_60 . repeat_region 174084 174171 . ? . description=trf scaffold_60 ensembl protein_coding_gene 170656 174756 . - . ID=Phyra81496;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000060;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 170656 174756 . - . ID=Phyra81496;Parent=Phyra81496;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 170656 174756 . - 0 ID=Phyra81496;Parent=Phyra81496;rank=1 scaffold_60 . exon 170656 174756 . - . ID=Phyra81496.1;Parent=Phyra81496;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 176477 178054 . - . ID=Phyra81497;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000061;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 176477 178054 . - . ID=Phyra81497;Parent=Phyra81497;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 176477 178054 . - 0 ID=Phyra81497;Parent=Phyra81497;rank=1 scaffold_60 . exon 176477 178054 . - . ID=Phyra81497.1;Parent=Phyra81497;constitutive=1;rank=1 scaffold_60 . biological_region 182003 182003 0.999 + . logic_name=eponine scaffold_60 . biological_region 183003 183009 0.999 - . logic_name=eponine scaffold_60 . repeat_region 183642 183652 . ? . description=dust scaffold_60 . biological_region 188360 188361 0.999 - . logic_name=eponine scaffold_60 ensembl protein_coding_gene 186570 188270 . + . ID=Phyra71927;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_60000009;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 186570 188270 . + . ID=Phyra71927;Parent=Phyra71927;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 186570 186596 . + 0 ID=Phyra71927;Parent=Phyra71927;rank=1 scaffold_60 . exon 186570 186596 . + . ID=Phyra71927.1;Parent=Phyra71927;constitutive=1;rank=1 scaffold_60 . CDS 186642 186964 . + 0 ID=Phyra71927;Parent=Phyra71927;rank=2 scaffold_60 . exon 186642 186964 . + . ID=Phyra71927.2;Parent=Phyra71927;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_60 . CDS 187027 187172 . + 0 ID=Phyra71927;Parent=Phyra71927;rank=3 scaffold_60 . exon 187027 187172 . + . ID=Phyra71927.3;Parent=Phyra71927;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_60 . CDS 187240 187412 . + 0 ID=Phyra71927;Parent=Phyra71927;rank=4 scaffold_60 . exon 187240 187412 . + . ID=Phyra71927.4;Parent=Phyra71927;constitutive=1;ensembl_phase=1;rank=4 scaffold_60 . CDS 187482 188270 . + 0 ID=Phyra71927;Parent=Phyra71927;rank=5 scaffold_60 . exon 187482 188270 . + . ID=Phyra71927.5;Parent=Phyra71927;constitutive=1;rank=5 scaffold_60 ensembl protein_coding_gene 179769 182225 . + . ID=Phyra81498;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000062;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 179769 182225 . + . ID=Phyra81498;Parent=Phyra81498;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 179769 182225 . + 0 ID=Phyra81498;Parent=Phyra81498;rank=1 scaffold_60 . exon 179769 182225 . + . ID=Phyra81498.1;Parent=Phyra81498;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 183863 186385 . + . ID=Phyra81499;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000063;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 183863 186385 . + . ID=Phyra81499;Parent=Phyra81499;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 183863 184388 . + 0 ID=Phyra81499;Parent=Phyra81499;rank=1 scaffold_60 . exon 183863 184388 . + . ID=Phyra81499.1;Parent=Phyra81499;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 184466 184622 . + 0 ID=Phyra81499;Parent=Phyra81499;rank=2 scaffold_60 . exon 184466 184622 . + . ID=Phyra81499.2;Parent=Phyra81499;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_60 . CDS 184696 186385 . + 0 ID=Phyra81499;Parent=Phyra81499;rank=3 scaffold_60 . exon 184696 186385 . + . ID=Phyra81499.3;Parent=Phyra81499;constitutive=1;ensembl_phase=2;rank=3 scaffold_60 ensembl protein_coding_gene 194526 195859 . - . ID=Phyra51583;biotype=protein_coding;external_name=gwEuk.60.99.1;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 194526 195859 . - . ID=Phyra51583;Parent=Phyra51583;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 194526 194706 . - 0 ID=Phyra51583;Parent=Phyra51583;rank=5 scaffold_60 . exon 194526 194706 . - . ID=Phyra51583.5;Parent=Phyra51583;constitutive=1;ensembl_phase=2;rank=5 scaffold_60 . CDS 194783 194944 . - 0 ID=Phyra51583;Parent=Phyra51583;rank=4 scaffold_60 . exon 194783 194944 . - . ID=Phyra51583.4;Parent=Phyra51583;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_60 . CDS 195020 195378 . - 0 ID=Phyra51583;Parent=Phyra51583;rank=3 scaffold_60 . exon 195020 195378 . - . ID=Phyra51583.3;Parent=Phyra51583;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_60 . CDS 195448 195537 . - 0 ID=Phyra51583;Parent=Phyra51583;rank=2 scaffold_60 . exon 195448 195537 . - . ID=Phyra51583.2;Parent=Phyra51583;constitutive=1;rank=2 scaffold_60 . CDS 195614 195859 . - 0 ID=Phyra51583;Parent=Phyra51583;rank=1 scaffold_60 . exon 195614 195859 . - . ID=Phyra51583.1;Parent=Phyra51583;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 188725 189513 . + . ID=Phyra81501;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000065;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 188725 189513 . + . ID=Phyra81501;Parent=Phyra81501;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 188725 189513 . + 0 ID=Phyra81501;Parent=Phyra81501;rank=1 scaffold_60 . exon 188725 189513 . + . ID=Phyra81501.1;Parent=Phyra81501;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 190203 192008 . + . ID=Phyra81502;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000066;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 190203 192008 . + . ID=Phyra81502;Parent=Phyra81502;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 190203 192008 . + 0 ID=Phyra81502;Parent=Phyra81502;rank=1 scaffold_60 . exon 190203 192008 . + . ID=Phyra81502.1;Parent=Phyra81502;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 193142 194095 . + . ID=Phyra81503;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000067;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 193142 194095 . + . ID=Phyra81503;Parent=Phyra81503;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 193142 194095 . + 0 ID=Phyra81503;Parent=Phyra81503;rank=1 scaffold_60 . exon 193142 194095 . + . ID=Phyra81503.1;Parent=Phyra81503;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 195994 196947 . + . ID=Phyra96032;biotype=protein_coding;external_name=C_scaffold_60000022;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 195994 196947 . + . ID=Phyra96032;Parent=Phyra96032;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 195994 196416 . + 0 ID=Phyra96032;Parent=Phyra96032;rank=1 scaffold_60 . exon 195994 196416 . + . ID=Phyra96032.1;Parent=Phyra96032;constitutive=1;rank=1 scaffold_60 . CDS 196597 196666 . + 0 ID=Phyra96032;Parent=Phyra96032;rank=2 scaffold_60 . exon 196597 196666 . + . ID=Phyra96032.2;Parent=Phyra96032;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_60 . CDS 196784 196947 . + 0 ID=Phyra96032;Parent=Phyra96032;rank=3 scaffold_60 . exon 196784 196947 . + . ID=Phyra96032.3;Parent=Phyra96032;constitutive=1;ensembl_phase=1;rank=3 scaffold_60 ensembl protein_coding_gene 197734 198214 . - . ID=Phyra96033;biotype=protein_coding;external_name=C_scaffold_60000023;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 197734 198214 . - . ID=Phyra96033;Parent=Phyra96033;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 197734 197752 . - 0 ID=Phyra96033;Parent=Phyra96033;rank=2 scaffold_60 . exon 197734 197752 . - . ID=Phyra96033.2;Parent=Phyra96033;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 197829 198214 . - 0 ID=Phyra96033;Parent=Phyra96033;rank=1 scaffold_60 . exon 197829 198214 . - . ID=Phyra96033.1;Parent=Phyra96033;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . biological_region 198614 198617 0.999 + . logic_name=eponine scaffold_60 . biological_region 198695 198698 0.999 - . logic_name=eponine scaffold_60 . biological_region 198770 198775 0.999 + . logic_name=eponine scaffold_60 . biological_region 198939 198944 0.999 - . logic_name=eponine scaffold_60 . biological_region 199273 199275 0.999 + . logic_name=eponine scaffold_60 . biological_region 200813 200818 0.999 - . logic_name=eponine scaffold_60 . repeat_region 200896 200904 . ? . description=dust scaffold_60 . repeat_region 202372 202415 . ? . description=trf scaffold_60 . repeat_region 206341 206462 . ? . description=trf scaffold_60 . repeat_region 206341 206498 . ? . description=trf scaffold_60 ensembl protein_coding_gene 200943 204179 . - . ID=Phyra81508;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000072;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 200943 204179 . - . ID=Phyra81508;Parent=Phyra81508;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 200943 201095 . - 0 ID=Phyra81508;Parent=Phyra81508;rank=5 scaffold_60 . exon 200943 201095 . - . ID=Phyra81508.5;Parent=Phyra81508;constitutive=1;rank=5 scaffold_60 . CDS 201123 202961 . - 0 ID=Phyra81508;Parent=Phyra81508;rank=4 scaffold_60 . exon 201123 202961 . - . ID=Phyra81508.4;Parent=Phyra81508;constitutive=1;rank=4 scaffold_60 . CDS 203148 203576 . - 0 ID=Phyra81508;Parent=Phyra81508;rank=3 scaffold_60 . exon 203148 203576 . - . ID=Phyra81508.3;Parent=Phyra81508;constitutive=1;rank=3 scaffold_60 . CDS 203656 203870 . - 0 ID=Phyra81508;Parent=Phyra81508;rank=2 scaffold_60 . exon 203656 203870 . - . ID=Phyra81508.2;Parent=Phyra81508;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 . CDS 203948 204179 . - 0 ID=Phyra81508;Parent=Phyra81508;rank=1 scaffold_60 . exon 203948 204179 . - . ID=Phyra81508.1;Parent=Phyra81508;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 ensembl protein_coding_gene 204560 205042 . - . ID=Phyra81509;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000073;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 204560 205042 . - . ID=Phyra81509;Parent=Phyra81509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 204560 205042 . - 0 ID=Phyra81509;Parent=Phyra81509;rank=1 scaffold_60 . exon 204560 205042 . - . ID=Phyra81509.1;Parent=Phyra81509;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 205653 207014 . - . ID=Phyra81510;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000074;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 205653 207014 . - . ID=Phyra81510;Parent=Phyra81510;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 205653 207014 . - 0 ID=Phyra81510;Parent=Phyra81510;rank=1 scaffold_60 . exon 205653 207014 . - . ID=Phyra81510.1;Parent=Phyra81510;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 207538 208167 . - . ID=Phyra81511;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000075;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 207538 208167 . - . ID=Phyra81511;Parent=Phyra81511;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 207538 208167 . - 0 ID=Phyra81511;Parent=Phyra81511;rank=1 scaffold_60 . exon 207538 208167 . - . ID=Phyra81511.1;Parent=Phyra81511;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 208464 211616 . + . ID=Phyra81512;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000076;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 208464 211616 . + . ID=Phyra81512;Parent=Phyra81512;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 208464 211616 . + 0 ID=Phyra81512;Parent=Phyra81512;rank=1 scaffold_60 . exon 208464 211616 . + . ID=Phyra81512.1;Parent=Phyra81512;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 198962 200878 . + . ID=Phyra96037;biotype=protein_coding;external_name=C_scaffold_60000027;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 198962 200878 . + . ID=Phyra96037;Parent=Phyra96037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 198962 199449 . + 0 ID=Phyra96037;Parent=Phyra96037;rank=1 scaffold_60 . exon 198962 199449 . + . ID=Phyra96037.1;Parent=Phyra96037;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . CDS 199567 199790 . + 0 ID=Phyra96037;Parent=Phyra96037;rank=2 scaffold_60 . exon 199567 199790 . + . ID=Phyra96037.2;Parent=Phyra96037;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 199884 200629 . + 0 ID=Phyra96037;Parent=Phyra96037;rank=3 scaffold_60 . exon 199884 200629 . + . ID=Phyra96037.3;Parent=Phyra96037;constitutive=1;ensembl_phase=1;rank=3 scaffold_60 . CDS 200690 200878 . + 0 ID=Phyra96037;Parent=Phyra96037;rank=4 scaffold_60 . exon 200690 200878 . + . ID=Phyra96037.4;Parent=Phyra96037;constitutive=1;rank=4 scaffold_60 ensembl protein_coding_gene 211773 212828 . - . ID=Phyra81513;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000077;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 211773 212828 . - . ID=Phyra81513;Parent=Phyra81513;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 211773 212828 . - 0 ID=Phyra81513;Parent=Phyra81513;rank=1 scaffold_60 . exon 211773 212828 . - . ID=Phyra81513.1;Parent=Phyra81513;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 214876 215160 . + . ID=Phyra96043;biotype=protein_coding;external_name=C_scaffold_60000033;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 214876 215160 . + . ID=Phyra96043;Parent=Phyra96043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 214876 215160 . + 0 ID=Phyra96043;Parent=Phyra96043;rank=1 scaffold_60 . exon 214876 215160 . + . ID=Phyra96043.1;Parent=Phyra96043;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 215778 217156 . - . ID=Phyra96044;biotype=protein_coding;external_name=C_scaffold_60000034;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 215778 217156 . - . ID=Phyra96044;Parent=Phyra96044;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 215778 215960 . - 0 ID=Phyra96044;Parent=Phyra96044;rank=5 scaffold_60 . exon 215778 215960 . - . ID=Phyra96044.5;Parent=Phyra96044;constitutive=1;rank=5 scaffold_60 . CDS 216047 216212 . - 0 ID=Phyra96044;Parent=Phyra96044;rank=4 scaffold_60 . exon 216047 216212 . - . ID=Phyra96044.4;Parent=Phyra96044;constitutive=1;ensembl_phase=2;rank=4 scaffold_60 . CDS 216327 216397 . - 0 ID=Phyra96044;Parent=Phyra96044;rank=3 scaffold_60 . exon 216327 216397 . - . ID=Phyra96044.3;Parent=Phyra96044;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_60 . CDS 216467 216986 . - 0 ID=Phyra96044;Parent=Phyra96044;rank=2 scaffold_60 . exon 216467 216986 . - . ID=Phyra96044.2;Parent=Phyra96044;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 217071 217156 . - 0 ID=Phyra96044;Parent=Phyra96044;rank=1 scaffold_60 . exon 217071 217156 . - . ID=Phyra96044.1;Parent=Phyra96044;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 ensembl protein_coding_gene 217521 219190 . - . ID=Phyra96045;biotype=protein_coding;external_name=C_scaffold_60000035;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 217521 219190 . - . ID=Phyra96045;Parent=Phyra96045;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 217521 217840 . - 0 ID=Phyra96045;Parent=Phyra96045;rank=3 scaffold_60 . exon 217521 217840 . - . ID=Phyra96045.3;Parent=Phyra96045;constitutive=1;ensembl_phase=1;rank=3 scaffold_60 . CDS 217915 218851 . - 0 ID=Phyra96045;Parent=Phyra96045;rank=2 scaffold_60 . exon 217915 218851 . - . ID=Phyra96045.2;Parent=Phyra96045;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_60 . CDS 218912 219190 . - 0 ID=Phyra96045;Parent=Phyra96045;rank=1 scaffold_60 . repeat_region 218758 218777 . ? . description=trf scaffold_60 . biological_region 219807 219813 0.999 - . logic_name=eponine scaffold_60 . biological_region 220480 220482 0.999 - . logic_name=eponine scaffold_60 . biological_region 221840 221841 0.999 + . logic_name=eponine scaffold_60 . biological_region 222098 222100 0.999 - . logic_name=eponine scaffold_60 . biological_region 222109 222112 0.999 + . logic_name=eponine scaffold_60 . biological_region 222138 222142 0.999 - . logic_name=eponine scaffold_60 . biological_region 223762 223764 0.999 - . logic_name=eponine scaffold_60 ensembl protein_coding_gene 219697 223411 . - . ID=Phyra81515;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000079;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 219697 223411 . - . ID=Phyra81515;Parent=Phyra81515;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 219697 222442 . - 0 ID=Phyra81515;Parent=Phyra81515;rank=4 scaffold_60 . exon 219697 222442 . - . ID=Phyra81515.4;Parent=Phyra81515;constitutive=1;ensembl_phase=2;rank=4 scaffold_60 . CDS 222509 222693 . - 0 ID=Phyra81515;Parent=Phyra81515;rank=3 scaffold_60 . exon 222509 222693 . - . ID=Phyra81515.3;Parent=Phyra81515;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_60 . CDS 222769 222951 . - 0 ID=Phyra81515;Parent=Phyra81515;rank=2 scaffold_60 . exon 222769 222951 . - . ID=Phyra81515.2;Parent=Phyra81515;constitutive=1;rank=2 scaffold_60 . CDS 223193 223411 . - 0 ID=Phyra81515;Parent=Phyra81515;rank=1 scaffold_60 . exon 223193 223411 . - . ID=Phyra81515.1;Parent=Phyra81515;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 223657 224429 . + . ID=Phyra81516;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000080;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 223657 224429 . + . ID=Phyra81516;Parent=Phyra81516;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 223657 224290 . + 0 ID=Phyra81516;Parent=Phyra81516;rank=1 scaffold_60 . exon 223657 224290 . + . ID=Phyra81516.1;Parent=Phyra81516;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 224413 224429 . + 0 ID=Phyra81516;Parent=Phyra81516;rank=2 scaffold_60 . exon 224413 224429 . + . ID=Phyra81516.2;Parent=Phyra81516;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 ensembl protein_coding_gene 225692 228086 . - . ID=Phyra81517;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000081;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 225692 228086 . - . ID=Phyra81517;Parent=Phyra81517;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 225692 226533 . - 0 ID=Phyra81517;Parent=Phyra81517;rank=6 scaffold_60 . exon 225692 226533 . - . ID=Phyra81517.6;Parent=Phyra81517;constitutive=1;ensembl_phase=1;rank=6 scaffold_60 . CDS 226561 226640 . - 0 ID=Phyra81517;Parent=Phyra81517;rank=5 scaffold_60 . exon 226561 226640 . - . ID=Phyra81517.5;Parent=Phyra81517;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_60 . CDS 226773 227023 . - 0 ID=Phyra81517;Parent=Phyra81517;rank=4 scaffold_60 . exon 226773 227023 . - . ID=Phyra81517.4;Parent=Phyra81517;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_60 . CDS 227178 227249 . - 0 ID=Phyra81517;Parent=Phyra81517;rank=3 scaffold_60 . exon 227178 227249 . - . ID=Phyra81517.3;Parent=Phyra81517;constitutive=1;rank=3 scaffold_60 . CDS 227335 227505 . - 0 ID=Phyra81517;Parent=Phyra81517;rank=2 scaffold_60 . exon 227335 227505 . - . ID=Phyra81517.2;Parent=Phyra81517;constitutive=1;rank=2 scaffold_60 . CDS 227580 228086 . - 0 ID=Phyra81517;Parent=Phyra81517;rank=1 scaffold_60 . exon 227580 228086 . - . ID=Phyra81517.1;Parent=Phyra81517;constitutive=1;rank=1 scaffold_60 . exon 218912 219190 . - . ID=Phyra96045.1;Parent=Phyra96045;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 229748 230274 . - . ID=Phyra81518;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000082;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 229748 230274 . - . ID=Phyra81518;Parent=Phyra81518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 229748 230059 . - 0 ID=Phyra81518;Parent=Phyra81518;rank=2 scaffold_60 . exon 229748 230059 . - . ID=Phyra81518.2;Parent=Phyra81518;constitutive=1;rank=2 scaffold_60 . CDS 230164 230274 . - 0 ID=Phyra81518;Parent=Phyra81518;rank=1 scaffold_60 . exon 230164 230274 . - . ID=Phyra81518.1;Parent=Phyra81518;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 231765 233450 . - . ID=Phyra81519;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000083;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 231765 233450 . - . ID=Phyra81519;Parent=Phyra81519;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 231765 233450 . - 0 ID=Phyra81519;Parent=Phyra81519;rank=1 scaffold_60 . exon 231765 233450 . - . ID=Phyra81519.1;Parent=Phyra81519;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 233869 234660 . + . ID=Phyra81520;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000084;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 233869 234660 . + . ID=Phyra81520;Parent=Phyra81520;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 233869 234660 . + 0 ID=Phyra81520;Parent=Phyra81520;rank=1 scaffold_60 . exon 233869 234660 . + . ID=Phyra81520.1;Parent=Phyra81520;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 235032 235754 . - . ID=Phyra81521;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000085;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 235032 235754 . - . ID=Phyra81521;Parent=Phyra81521;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 235032 235754 . - 0 ID=Phyra81521;Parent=Phyra81521;rank=1 scaffold_60 . exon 235032 235754 . - . ID=Phyra81521.1;Parent=Phyra81521;constitutive=1;rank=1 scaffold_60 . biological_region 239094 239100 0.999 + . logic_name=eponine scaffold_60 . biological_region 239796 239797 0.999 + . logic_name=eponine scaffold_60 . biological_region 239903 239908 0.999 - . logic_name=eponine scaffold_60 . biological_region 243048 243048 0.999 + . logic_name=eponine scaffold_60 . biological_region 243299 243303 0.999 - . logic_name=eponine scaffold_60 . biological_region 243335 243339 0.999 - . logic_name=eponine scaffold_60 . biological_region 244813 244816 0.999 - . logic_name=eponine scaffold_60 . biological_region 245577 245580 0.999 + . logic_name=eponine scaffold_60 . biological_region 246035 246037 0.999 - . logic_name=eponine scaffold_60 . biological_region 247470 247471 0.999 + . logic_name=eponine scaffold_60 ensembl protein_coding_gene 238771 240309 . + . ID=Phyra71929;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_60000011;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 238771 240309 . + . ID=Phyra71929;Parent=Phyra71929;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 238771 240309 . + 0 ID=Phyra71929;Parent=Phyra71929;rank=1 scaffold_60 . exon 238771 240309 . + . ID=Phyra71929.1;Parent=Phyra71929;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 240573 242060 . - . ID=Phyra81523;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000087;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 240573 242060 . - . ID=Phyra81523;Parent=Phyra81523;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 240573 242060 . - 0 ID=Phyra81523;Parent=Phyra81523;rank=1 scaffold_60 . exon 240573 242060 . - . ID=Phyra81523.1;Parent=Phyra81523;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 242440 243468 . + . ID=Phyra81524;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000088;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 242440 243468 . + . ID=Phyra81524;Parent=Phyra81524;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 242440 243468 . + 0 ID=Phyra81524;Parent=Phyra81524;rank=1 scaffold_60 . exon 242440 243468 . + . ID=Phyra81524.1;Parent=Phyra81524;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 243981 244982 . + . ID=Phyra81525;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000089;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 243981 244982 . + . ID=Phyra81525;Parent=Phyra81525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 243981 244982 . + 0 ID=Phyra81525;Parent=Phyra81525;rank=1 scaffold_60 . exon 243981 244982 . + . ID=Phyra81525.1;Parent=Phyra81525;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 245412 248249 . - . ID=Phyra81526;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000090;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 245412 248249 . - . ID=Phyra81526;Parent=Phyra81526;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 245412 246323 . - 0 ID=Phyra81526;Parent=Phyra81526;rank=4 scaffold_60 . exon 245412 246323 . - . ID=Phyra81526.4;Parent=Phyra81526;constitutive=1;rank=4 scaffold_60 . CDS 246412 246470 . - 0 ID=Phyra81526;Parent=Phyra81526;rank=3 scaffold_60 . exon 246412 246470 . - . ID=Phyra81526.3;Parent=Phyra81526;constitutive=1;ensembl_phase=1;rank=3 scaffold_60 . CDS 246770 247802 . - 0 ID=Phyra81526;Parent=Phyra81526;rank=2 scaffold_60 . exon 246770 247802 . - . ID=Phyra81526.2;Parent=Phyra81526;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_60 . CDS 247887 248249 . - 0 ID=Phyra81526;Parent=Phyra81526;rank=1 scaffold_60 . exon 247887 248249 . - . ID=Phyra81526.1;Parent=Phyra81526;constitutive=1;rank=1 scaffold_60 . repeat_region 253514 253563 . ? . description=dust scaffold_60 ensembl protein_coding_gene 249264 249824 . - . ID=Phyra81527;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000091;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 249264 249824 . - . ID=Phyra81527;Parent=Phyra81527;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 249264 249824 . - 0 ID=Phyra81527;Parent=Phyra81527;rank=1 scaffold_60 . exon 249264 249824 . - . ID=Phyra81527.1;Parent=Phyra81527;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 253058 254280 . - . ID=Phyra81529;biotype=protein_coding;description=Elicitin-like protein RAL12 [Source:UniProtKB/TrEMBL%3BAcc:Q2N0D1];external_name=fgenesh1_pg.C_scaffold_60000093;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 253058 254280 . - . ID=Phyra81529;Parent=Phyra81529;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 253058 253468 . - 0 ID=Phyra81529;Parent=Phyra81529;rank=3 scaffold_60 . exon 253058 253468 . - . ID=Phyra81529.3;Parent=Phyra81529;constitutive=1;rank=3 scaffold_60 . CDS 253639 253758 . - 0 ID=Phyra81529;Parent=Phyra81529;rank=2 scaffold_60 . exon 253639 253758 . - . ID=Phyra81529.2;Parent=Phyra81529;constitutive=1;rank=2 scaffold_60 . CDS 253873 254280 . - 0 ID=Phyra81529;Parent=Phyra81529;rank=1 scaffold_60 . exon 253873 254280 . - . ID=Phyra81529.1;Parent=Phyra81529;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 254989 256367 . + . ID=Phyra81530;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000094;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 254989 256367 . + . ID=Phyra81530;Parent=Phyra81530;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 254989 255232 . + 0 ID=Phyra81530;Parent=Phyra81530;rank=1 scaffold_60 . exon 254989 255232 . + . ID=Phyra81530.1;Parent=Phyra81530;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 255434 256079 . + 0 ID=Phyra81530;Parent=Phyra81530;rank=2 scaffold_60 . exon 255434 256079 . + . ID=Phyra81530.2;Parent=Phyra81530;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_60 . CDS 256211 256367 . + 0 ID=Phyra81530;Parent=Phyra81530;rank=3 scaffold_60 . exon 256211 256367 . + . ID=Phyra81530.3;Parent=Phyra81530;constitutive=1;ensembl_phase=2;rank=3 scaffold_60 ensembl protein_coding_gene 256873 258012 . - . ID=Phyra81531;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000095;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 256873 258012 . - . ID=Phyra81531;Parent=Phyra81531;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 256873 257810 . - 0 ID=Phyra81531;Parent=Phyra81531;rank=2 scaffold_60 . exon 256873 257810 . - . ID=Phyra81531.2;Parent=Phyra81531;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 . CDS 257874 258012 . - 0 ID=Phyra81531;Parent=Phyra81531;rank=1 scaffold_60 . exon 257874 258012 . - . ID=Phyra81531.1;Parent=Phyra81531;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 ensembl protein_coding_gene 251670 252935 . + . ID=Phyra96049;biotype=protein_coding;external_name=C_scaffold_60000039;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 251670 252935 . + . ID=Phyra96049;Parent=Phyra96049;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 251670 251831 . + 0 ID=Phyra96049;Parent=Phyra96049;rank=1 scaffold_60 . exon 251670 251831 . + . ID=Phyra96049.1;Parent=Phyra96049;constitutive=1;rank=1 scaffold_60 . CDS 251892 252141 . + 0 ID=Phyra96049;Parent=Phyra96049;rank=2 scaffold_60 . exon 251892 252141 . + . ID=Phyra96049.2;Parent=Phyra96049;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_60 . CDS 252265 252666 . + 0 ID=Phyra96049;Parent=Phyra96049;rank=3 scaffold_60 . exon 252265 252666 . + . ID=Phyra96049.3;Parent=Phyra96049;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_60 . CDS 252721 252935 . + 0 ID=Phyra96049;Parent=Phyra96049;rank=4 scaffold_60 . exon 252721 252935 . + . ID=Phyra96049.4;Parent=Phyra96049;constitutive=1;ensembl_phase=1;rank=4 scaffold_60 . repeat_region 258531 258558 . ? . description=trf scaffold_60 . biological_region 259225 259227 0.999 + . logic_name=eponine scaffold_60 . biological_region 259665 259668 0.999 + . logic_name=eponine scaffold_60 . repeat_region 264104 264163 . ? . description=trf scaffold_60 . repeat_region 264210 264344 . ? . description=trf scaffold_60 ensembl protein_coding_gene 258493 259800 . - . ID=Phyra81532;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000096;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 258493 259800 . - . ID=Phyra81532;Parent=Phyra81532;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 258493 259413 . - 0 ID=Phyra81532;Parent=Phyra81532;rank=3 scaffold_60 . exon 258493 259413 . - . ID=Phyra81532.3;Parent=Phyra81532;constitutive=1;rank=3 scaffold_60 . CDS 259492 259595 . - 0 ID=Phyra81532;Parent=Phyra81532;rank=2 scaffold_60 . exon 259492 259595 . - . ID=Phyra81532.2;Parent=Phyra81532;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 . CDS 259662 259800 . - 0 ID=Phyra81532;Parent=Phyra81532;rank=1 scaffold_60 . exon 259662 259800 . - . ID=Phyra81532.1;Parent=Phyra81532;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 ensembl protein_coding_gene 263227 264870 . + . ID=Phyra81533;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000097;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 263227 264870 . + . ID=Phyra81533;Parent=Phyra81533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 263227 264870 . + 0 ID=Phyra81533;Parent=Phyra81533;rank=1 scaffold_60 . exon 263227 264870 . + . ID=Phyra81533.1;Parent=Phyra81533;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 265484 266575 . - . ID=Phyra81534;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000098;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 265484 266575 . - . ID=Phyra81534;Parent=Phyra81534;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 265484 266373 . - 0 ID=Phyra81534;Parent=Phyra81534;rank=2 scaffold_60 . exon 265484 266373 . - . ID=Phyra81534.2;Parent=Phyra81534;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 . CDS 266434 266575 . - 0 ID=Phyra81534;Parent=Phyra81534;rank=1 scaffold_60 . exon 266434 266575 . - . ID=Phyra81534.1;Parent=Phyra81534;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 ensembl protein_coding_gene 268024 269709 . + . ID=Phyra81535;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000099;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 268024 269709 . + . ID=Phyra81535;Parent=Phyra81535;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 268024 269709 . + 0 ID=Phyra81535;Parent=Phyra81535;rank=1 scaffold_60 . exon 268024 269709 . + . ID=Phyra81535.1;Parent=Phyra81535;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 269855 271078 . - . ID=Phyra81536;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000100;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 269855 271078 . - . ID=Phyra81536;Parent=Phyra81536;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 269855 270908 . - 0 ID=Phyra81536;Parent=Phyra81536;rank=2 scaffold_60 . exon 269855 270908 . - . ID=Phyra81536.2;Parent=Phyra81536;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 270993 271078 . - 0 ID=Phyra81536;Parent=Phyra81536;rank=1 scaffold_60 . exon 270993 271078 . - . ID=Phyra81536.1;Parent=Phyra81536;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 ensembl protein_coding_gene 271373 272518 . - . ID=Phyra81537;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000101;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 271373 272518 . - . ID=Phyra81537;Parent=Phyra81537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 271373 272518 . - 0 ID=Phyra81537;Parent=Phyra81537;rank=1 scaffold_60 . exon 271373 272518 . - . ID=Phyra81537.1;Parent=Phyra81537;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 272782 290987 . + . ID=Phyra81538;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000102;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 272782 290987 . + . ID=Phyra81538;Parent=Phyra81538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 272782 273419 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=1 scaffold_60 . exon 272782 273419 . + . ID=Phyra81538.1;Parent=Phyra81538;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . CDS 273475 279848 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=2 scaffold_60 . exon 273475 279848 . + . ID=Phyra81538.2;Parent=Phyra81538;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 280045 280361 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=3 scaffold_60 . CDS 280383 280523 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=4 scaffold_60 . CDS 280588 280767 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=5 scaffold_60 . CDS 280833 281124 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=6 scaffold_60 . CDS 281596 282166 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=7 scaffold_60 . CDS 282235 284095 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=8 scaffold_60 . CDS 284164 284307 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=9 scaffold_60 . CDS 284389 285053 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=10 scaffold_60 . CDS 285099 285889 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=11 scaffold_60 . CDS 286298 287755 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=12 scaffold_60 . CDS 287821 287999 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=13 scaffold_60 . CDS 288128 288233 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=14 scaffold_60 . CDS 288589 288667 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=15 scaffold_60 . CDS 288747 288950 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=16 scaffold_60 . CDS 289008 289115 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=17 scaffold_60 . CDS 289181 289316 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=18 scaffold_60 . CDS 289487 289687 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=19 scaffold_60 . CDS 289815 289982 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=20 scaffold_60 . CDS 290217 290293 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=21 scaffold_60 . CDS 290462 290925 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=22 scaffold_60 . CDS 290980 290987 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=23 scaffold_60 . biological_region 280182 280187 0.999 - . logic_name=eponine scaffold_60 . biological_region 282581 282581 0.999 - . logic_name=eponine scaffold_60 . exon 280045 280361 . + . ID=Phyra81538.3;Parent=Phyra81538;constitutive=1;ensembl_phase=1;rank=3 scaffold_60 . exon 280383 280523 . + . ID=Phyra81538.4;Parent=Phyra81538;constitutive=1;rank=4 scaffold_60 . exon 280588 280767 . + . ID=Phyra81538.5;Parent=Phyra81538;constitutive=1;rank=5 scaffold_60 . exon 280833 281124 . + . ID=Phyra81538.6;Parent=Phyra81538;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_60 . exon 281596 282166 . + . ID=Phyra81538.7;Parent=Phyra81538;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_60 . exon 282235 284095 . + . ID=Phyra81538.8;Parent=Phyra81538;constitutive=1;ensembl_phase=2;rank=8 scaffold_60 . exon 284164 284307 . + . ID=Phyra81538.9;Parent=Phyra81538;constitutive=1;rank=9 scaffold_60 . exon 284389 285053 . + . ID=Phyra81538.10;Parent=Phyra81538;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_60 . exon 285099 285889 . + . ID=Phyra81538.11;Parent=Phyra81538;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_60 . exon 286298 287755 . + . ID=Phyra81538.12;Parent=Phyra81538;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_60 . exon 287821 287999 . + . ID=Phyra81538.13;Parent=Phyra81538;constitutive=1;ensembl_phase=1;rank=13 scaffold_60 . repeat_region 297108 297140 . ? . description=trf scaffold_60 ensembl protein_coding_gene 291233 292093 . - . ID=Phyra71930;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_60000012;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 291233 292093 . - . ID=Phyra71930;Parent=Phyra71930;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 291233 291937 . - 0 ID=Phyra71930;Parent=Phyra71930;rank=2 scaffold_60 . exon 291233 291937 . - . ID=Phyra71930.2;Parent=Phyra71930;constitutive=1;rank=2 scaffold_60 . CDS 292040 292093 . - 0 ID=Phyra71930;Parent=Phyra71930;rank=1 scaffold_60 . exon 292040 292093 . - . ID=Phyra71930.1;Parent=Phyra71930;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 293591 294310 . + . ID=Phyra71931;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_60000013;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 293591 294310 . + . ID=Phyra71931;Parent=Phyra71931;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 293591 294310 . + 0 ID=Phyra71931;Parent=Phyra71931;rank=1 scaffold_60 . exon 293591 294310 . + . ID=Phyra71931.1;Parent=Phyra71931;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 272782 290987 . + . ID=Phyra81538;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000102;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 272782 290987 . + . ID=Phyra81538;Parent=Phyra81538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 272782 273419 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=1 scaffold_60 . CDS 273475 279848 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=2 scaffold_60 . CDS 280045 280361 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=3 scaffold_60 . CDS 280383 280523 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=4 scaffold_60 . CDS 280588 280767 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=5 scaffold_60 . CDS 280833 281124 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=6 scaffold_60 . CDS 281596 282166 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=7 scaffold_60 . CDS 282235 284095 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=8 scaffold_60 . CDS 284164 284307 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=9 scaffold_60 . CDS 284389 285053 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=10 scaffold_60 . CDS 285099 285889 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=11 scaffold_60 . CDS 286298 287755 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=12 scaffold_60 . CDS 287821 287999 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=13 scaffold_60 . CDS 288128 288233 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=14 scaffold_60 . exon 288128 288233 . + . ID=Phyra81538.14;Parent=Phyra81538;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_60 . CDS 288589 288667 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=15 scaffold_60 . exon 288589 288667 . + . ID=Phyra81538.15;Parent=Phyra81538;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=15 scaffold_60 . CDS 288747 288950 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=16 scaffold_60 . exon 288747 288950 . + . ID=Phyra81538.16;Parent=Phyra81538;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=16 scaffold_60 . CDS 289008 289115 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=17 scaffold_60 . exon 289008 289115 . + . ID=Phyra81538.17;Parent=Phyra81538;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=17 scaffold_60 . CDS 289181 289316 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=18 scaffold_60 . exon 289181 289316 . + . ID=Phyra81538.18;Parent=Phyra81538;constitutive=1;ensembl_phase=2;rank=18 scaffold_60 . CDS 289487 289687 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=19 scaffold_60 . exon 289487 289687 . + . ID=Phyra81538.19;Parent=Phyra81538;constitutive=1;rank=19 scaffold_60 . CDS 289815 289982 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=20 scaffold_60 . exon 289815 289982 . + . ID=Phyra81538.20;Parent=Phyra81538;constitutive=1;rank=20 scaffold_60 . CDS 290217 290293 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=21 scaffold_60 . exon 290217 290293 . + . ID=Phyra81538.21;Parent=Phyra81538;constitutive=1;ensembl_end_phase=2;rank=21 scaffold_60 . CDS 290462 290925 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=22 scaffold_60 . exon 290462 290925 . + . ID=Phyra81538.22;Parent=Phyra81538;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=22 scaffold_60 . CDS 290980 290987 . + 0 ID=Phyra81538;Parent=Phyra81538;rank=23 scaffold_60 . exon 290980 290987 . + . ID=Phyra81538.23;Parent=Phyra81538;constitutive=1;ensembl_phase=1;rank=23 scaffold_60 ensembl protein_coding_gene 297267 298178 . - . ID=Phyra81542;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000106;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 297267 298178 . - . ID=Phyra81542;Parent=Phyra81542;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 297267 298178 . - 0 ID=Phyra81542;Parent=Phyra81542;rank=1 scaffold_60 . exon 297267 298178 . - . ID=Phyra81542.1;Parent=Phyra81542;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 295124 296965 . + . ID=Phyra96055;biotype=protein_coding;external_name=C_scaffold_60000045;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 295124 296965 . + . ID=Phyra96055;Parent=Phyra96055;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 295124 295317 . + 0 ID=Phyra96055;Parent=Phyra96055;rank=1 scaffold_60 . exon 295124 295317 . + . ID=Phyra96055.1;Parent=Phyra96055;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . CDS 295413 295503 . + 0 ID=Phyra96055;Parent=Phyra96055;rank=2 scaffold_60 . exon 295413 295503 . + . ID=Phyra96055.2;Parent=Phyra96055;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 295648 296514 . + 0 ID=Phyra96055;Parent=Phyra96055;rank=3 scaffold_60 . exon 295648 296514 . + . ID=Phyra96055.3;Parent=Phyra96055;constitutive=1;rank=3 scaffold_60 . CDS 296572 296648 . + 0 ID=Phyra96055;Parent=Phyra96055;rank=4 scaffold_60 . exon 296572 296648 . + . ID=Phyra96055.4;Parent=Phyra96055;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_60 . CDS 296717 296904 . + 0 ID=Phyra96055;Parent=Phyra96055;rank=5 scaffold_60 . exon 296717 296904 . + . ID=Phyra96055.5;Parent=Phyra96055;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_60 . CDS 296958 296965 . + 0 ID=Phyra96055;Parent=Phyra96055;rank=6 scaffold_60 . exon 296958 296965 . + . ID=Phyra96055.6;Parent=Phyra96055;constitutive=1;ensembl_phase=1;rank=6 scaffold_60 . biological_region 297878 297879 0.999 + . logic_name=eponine scaffold_60 . biological_region 297893 297897 0.999 + . logic_name=eponine scaffold_60 . biological_region 297911 297912 0.999 - . logic_name=eponine scaffold_60 . repeat_region 298340 298376 . ? . description=dust scaffold_60 . repeat_region 300805 300854 . ? . description=dust scaffold_60 . biological_region 301238 301240 0.999 - . logic_name=eponine scaffold_60 . repeat_region 301789 301838 . ? . description=dust scaffold_60 . repeat_region 302019 302027 . ? . description=dust scaffold_60 . repeat_region 303316 303346 . ? . description=dust scaffold_60 . biological_region 303781 303782 0.999 + . logic_name=eponine scaffold_60 . biological_region 303796 303800 0.999 - . logic_name=eponine scaffold_60 . biological_region 303814 303815 0.999 - . logic_name=eponine scaffold_60 . biological_region 304243 304245 0.999 - . logic_name=eponine scaffold_60 ensembl protein_coding_gene 299249 300463 . - . ID=Phyra81543;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000107;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 299249 300463 . - . ID=Phyra81543;Parent=Phyra81543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 299249 299473 . - 0 ID=Phyra81543;Parent=Phyra81543;rank=2 scaffold_60 . exon 299249 299473 . - . ID=Phyra81543.2;Parent=Phyra81543;constitutive=1;rank=2 scaffold_60 . CDS 299549 300463 . - 0 ID=Phyra81543;Parent=Phyra81543;rank=1 scaffold_60 . exon 299549 300463 . - . ID=Phyra81543.1;Parent=Phyra81543;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 300914 301420 . + . ID=Phyra81544;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000108;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 300914 301420 . + . ID=Phyra81544;Parent=Phyra81544;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 300914 301420 . + 0 ID=Phyra81544;Parent=Phyra81544;rank=1 scaffold_60 . exon 300914 301420 . + . ID=Phyra81544.1;Parent=Phyra81544;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 301932 302552 . + . ID=Phyra81545;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000109;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 301932 302552 . + . ID=Phyra81545;Parent=Phyra81545;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 301932 301973 . + 0 ID=Phyra81545;Parent=Phyra81545;rank=1 scaffold_60 . exon 301932 301973 . + . ID=Phyra81545.1;Parent=Phyra81545;constitutive=1;rank=1 scaffold_60 . CDS 302039 302098 . + 0 ID=Phyra81545;Parent=Phyra81545;rank=2 scaffold_60 . exon 302039 302098 . + . ID=Phyra81545.2;Parent=Phyra81545;constitutive=1;rank=2 scaffold_60 . CDS 302168 302383 . + 0 ID=Phyra81545;Parent=Phyra81545;rank=3 scaffold_60 . exon 302168 302383 . + . ID=Phyra81545.3;Parent=Phyra81545;constitutive=1;rank=3 scaffold_60 . CDS 302451 302552 . + 0 ID=Phyra81545;Parent=Phyra81545;rank=4 scaffold_60 . exon 302451 302552 . + . ID=Phyra81545.4;Parent=Phyra81545;constitutive=1;rank=4 scaffold_60 ensembl protein_coding_gene 303514 304425 . + . ID=Phyra81546;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000110;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 303514 304425 . + . ID=Phyra81546;Parent=Phyra81546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 303514 304425 . + 0 ID=Phyra81546;Parent=Phyra81546;rank=1 scaffold_60 . exon 303514 304425 . + . ID=Phyra81546.1;Parent=Phyra81546;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 304723 307209 . - . ID=Phyra81547;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000111;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 304723 307209 . - . ID=Phyra81547;Parent=Phyra81547;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 304723 307209 . - 0 ID=Phyra81547;Parent=Phyra81547;rank=1 scaffold_60 . exon 304723 307209 . - . ID=Phyra81547.1;Parent=Phyra81547;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 311769 312796 . - . ID=Phyra81548;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000112;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 311769 312796 . - . ID=Phyra81548;Parent=Phyra81548;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 311769 311950 . - 0 ID=Phyra81548;Parent=Phyra81548;rank=2 scaffold_60 . exon 311769 311950 . - . ID=Phyra81548.2;Parent=Phyra81548;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 . CDS 312055 312796 . - 0 ID=Phyra81548;Parent=Phyra81548;rank=1 scaffold_60 . exon 312055 312796 . - . ID=Phyra81548.1;Parent=Phyra81548;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 ensembl protein_coding_gene 313497 314318 . + . ID=Phyra81549;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000113;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 313497 314318 . + . ID=Phyra81549;Parent=Phyra81549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 313497 314318 . + 0 ID=Phyra81549;Parent=Phyra81549;rank=1 scaffold_60 . exon 313497 314318 . + . ID=Phyra81549.1;Parent=Phyra81549;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 316338 317854 . - . ID=Phyra96056;biotype=protein_coding;external_name=C_scaffold_60000046;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 316338 317854 . - . ID=Phyra96056;Parent=Phyra96056;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 316338 316355 . - 0 ID=Phyra96056;Parent=Phyra96056;rank=4 scaffold_60 . exon 316338 316355 . - . ID=Phyra96056.4;Parent=Phyra96056;constitutive=1;rank=4 scaffold_60 . CDS 316466 316839 . - 0 ID=Phyra96056;Parent=Phyra96056;rank=3 scaffold_60 . exon 316466 316839 . - . ID=Phyra96056.3;Parent=Phyra96056;constitutive=1;ensembl_phase=1;rank=3 scaffold_60 . CDS 317218 317464 . - 0 ID=Phyra96056;Parent=Phyra96056;rank=2 scaffold_60 . exon 317218 317464 . - . ID=Phyra96056.2;Parent=Phyra96056;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_60 . CDS 317573 317854 . - 0 ID=Phyra96056;Parent=Phyra96056;rank=1 scaffold_60 . exon 317573 317854 . - . ID=Phyra96056.1;Parent=Phyra96056;constitutive=1;rank=1 scaffold_60 . repeat_region 317938 318901 . ? . description=dust scaffold_60 . biological_region 321939 321939 0.999 + . logic_name=eponine scaffold_60 . biological_region 325459 325461 0.999 - . logic_name=eponine scaffold_60 . repeat_region 325927 325971 . ? . description=trf scaffold_60 ensembl protein_coding_gene 319373 320434 . - . ID=Phyra71932;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_60000014;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 319373 320434 . - . ID=Phyra71932;Parent=Phyra71932;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 319373 320434 . - 0 ID=Phyra71932;Parent=Phyra71932;rank=1 scaffold_60 . exon 319373 320434 . - . ID=Phyra71932.1;Parent=Phyra71932;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 324866 325927 . - . ID=Phyra71933;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_60000015;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 324866 325927 . - . ID=Phyra71933;Parent=Phyra71933;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 324866 325927 . - 0 ID=Phyra71933;Parent=Phyra71933;rank=1 scaffold_60 . exon 324866 325927 . - . ID=Phyra71933.1;Parent=Phyra71933;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 320674 322109 . - . ID=Phyra81551;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_60000115;logic_name=jgi_phyra1 scaffold_60 ensembl transcript 320674 322109 . - . ID=Phyra81551;Parent=Phyra81551;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_60 . CDS 320674 320921 . - 0 ID=Phyra81551;Parent=Phyra81551;rank=3 scaffold_60 . exon 320674 320921 . - . ID=Phyra81551.3;Parent=Phyra81551;constitutive=1;ensembl_phase=1;rank=3 scaffold_60 . CDS 320995 321195 . - 0 ID=Phyra81551;Parent=Phyra81551;rank=2 scaffold_60 . exon 320995 321195 . - . ID=Phyra81551.2;Parent=Phyra81551;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_60 . CDS 321257 322109 . - 0 ID=Phyra81551;Parent=Phyra81551;rank=1 scaffold_60 . exon 321257 322109 . - . ID=Phyra81551.1;Parent=Phyra81551;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_58 1 330881 scaffold_58 . repeat_region 1417 1466 . ? . description=dust scaffold_58 . biological_region 2739 2741 0.999 - . logic_name=eponine scaffold_58 . biological_region 3316 3322 0.999 - . logic_name=eponine scaffold_58 . biological_region 3343 3345 0.999 - . logic_name=eponine scaffold_58 . biological_region 9271 9272 0.999 - . logic_name=eponine scaffold_58 ensembl protein_coding_gene 2863 3858 . + . ID=Phyra71884;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_58000001;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 2863 3858 . + . ID=Phyra71884;Parent=Phyra71884;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 2863 3858 . + 0 ID=Phyra71884;Parent=Phyra71884;rank=1 scaffold_58 . exon 2863 3858 . + . ID=Phyra71884.1;Parent=Phyra71884;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 1964 2491 . + . ID=Phyra81238;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000001;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 1964 2491 . + . ID=Phyra81238;Parent=Phyra81238;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 1964 2491 . + 0 ID=Phyra81238;Parent=Phyra81238;rank=1 scaffold_58 . exon 1964 2491 . + . ID=Phyra81238.1;Parent=Phyra81238;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 3992 7645 . + . ID=Phyra81240;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000003;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 3992 7645 . + . ID=Phyra81240;Parent=Phyra81240;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 3992 7645 . + 0 ID=Phyra81240;Parent=Phyra81240;rank=1 scaffold_58 . exon 3992 7645 . + . ID=Phyra81240.1;Parent=Phyra81240;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 7909 9183 . - . ID=Phyra81241;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000004;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 7909 9183 . - . ID=Phyra81241;Parent=Phyra81241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 7909 9183 . - 0 ID=Phyra81241;Parent=Phyra81241;rank=1 scaffold_58 . exon 7909 9183 . - . ID=Phyra81241.1;Parent=Phyra81241;constitutive=1;rank=1 scaffold_58 . repeat_region 11761 11802 . ? . description=trf scaffold_58 . repeat_region 12204 12239 . ? . description=trf scaffold_58 . repeat_region 12420 12459 . ? . description=trf scaffold_58 . repeat_region 15786 15825 . ? . description=trf scaffold_58 . repeat_region 16006 16041 . ? . description=trf scaffold_58 . repeat_region 16443 16484 . ? . description=trf scaffold_58 ensembl protein_coding_gene 14428 15353 . - . ID=Phyra51037;biotype=protein_coding;external_name=gwEuk.58.52.1;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 14428 15353 . - . ID=Phyra51037;Parent=Phyra51037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 14428 14989 . - 0 ID=Phyra51037;Parent=Phyra51037;rank=2 scaffold_58 . exon 14428 14989 . - . ID=Phyra51037.2;Parent=Phyra51037;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 15055 15353 . - 0 ID=Phyra51037;Parent=Phyra51037;rank=1 scaffold_58 . exon 15055 15353 . - . ID=Phyra51037.1;Parent=Phyra51037;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 ensembl protein_coding_gene 10075 11178 . + . ID=Phyra81242;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000005;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 10075 11178 . + . ID=Phyra81242;Parent=Phyra81242;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 10075 11178 . + 0 ID=Phyra81242;Parent=Phyra81242;rank=1 scaffold_58 . exon 10075 11178 . + . ID=Phyra81242.1;Parent=Phyra81242;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 11590 12579 . + . ID=Phyra81243;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000006;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 11590 12579 . + . ID=Phyra81243;Parent=Phyra81243;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 11590 12579 . + 0 ID=Phyra81243;Parent=Phyra81243;rank=1 scaffold_58 . exon 11590 12579 . + . ID=Phyra81243.1;Parent=Phyra81243;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 15675 16655 . - . ID=Phyra81245;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000008;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 15675 16655 . - . ID=Phyra81245;Parent=Phyra81245;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 15675 16655 . - 0 ID=Phyra81245;Parent=Phyra81245;rank=1 scaffold_58 . exon 15675 16655 . - . ID=Phyra81245.1;Parent=Phyra81245;constitutive=1;rank=1 scaffold_58 . repeat_region 19475 19483 . ? . description=dust scaffold_58 . biological_region 24988 24990 0.999 - . logic_name=eponine scaffold_58 ensembl protein_coding_gene 22290 22914 . - . ID=Phyra81246;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000009;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 22290 22914 . - . ID=Phyra81246;Parent=Phyra81246;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 22290 22705 . - 0 ID=Phyra81246;Parent=Phyra81246;rank=3 scaffold_58 . exon 22290 22705 . - . ID=Phyra81246.3;Parent=Phyra81246;constitutive=1;ensembl_phase=1;rank=3 scaffold_58 . CDS 22778 22872 . - 0 ID=Phyra81246;Parent=Phyra81246;rank=2 scaffold_58 . exon 22778 22872 . - . ID=Phyra81246.2;Parent=Phyra81246;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 22907 22914 . - 0 ID=Phyra81246;Parent=Phyra81246;rank=1 scaffold_58 . exon 22907 22914 . - . ID=Phyra81246.1;Parent=Phyra81246;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 ensembl protein_coding_gene 23539 24655 . - . ID=Phyra81247;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000010;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 23539 24655 . - . ID=Phyra81247;Parent=Phyra81247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 23539 24487 . - 0 ID=Phyra81247;Parent=Phyra81247;rank=2 scaffold_58 . exon 23539 24487 . - . ID=Phyra81247.2;Parent=Phyra81247;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 24567 24655 . - 0 ID=Phyra81247;Parent=Phyra81247;rank=1 scaffold_58 . exon 24567 24655 . - . ID=Phyra81247.1;Parent=Phyra81247;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 ensembl protein_coding_gene 24829 27158 . - . ID=Phyra81248;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000011;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 24829 27158 . - . ID=Phyra81248;Parent=Phyra81248;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 24829 26873 . - 0 ID=Phyra81248;Parent=Phyra81248;rank=2 scaffold_58 . exon 24829 26873 . - . ID=Phyra81248.2;Parent=Phyra81248;constitutive=1;ensembl_phase=1;rank=2 scaffold_58 . CDS 27131 27158 . - 0 ID=Phyra81248;Parent=Phyra81248;rank=1 scaffold_58 . exon 27131 27158 . - . ID=Phyra81248.1;Parent=Phyra81248;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 ensembl protein_coding_gene 29546 30237 . - . ID=Phyra81249;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000012;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 29546 30237 . - . ID=Phyra81249;Parent=Phyra81249;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 29546 29607 . - 0 ID=Phyra81249;Parent=Phyra81249;rank=2 scaffold_58 . exon 29546 29607 . - . ID=Phyra81249.2;Parent=Phyra81249;constitutive=1;ensembl_phase=1;rank=2 scaffold_58 . CDS 29631 30237 . - 0 ID=Phyra81249;Parent=Phyra81249;rank=1 scaffold_58 . exon 29631 30237 . - . ID=Phyra81249.1;Parent=Phyra81249;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 ensembl protein_coding_gene 33393 36185 . - . ID=Phyra95931;biotype=protein_coding;external_name=C_scaffold_58000004;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 33393 36185 . - . ID=Phyra95931;Parent=Phyra95931;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 33393 33521 . - 0 ID=Phyra95931;Parent=Phyra95931;rank=7 scaffold_58 . exon 33393 33521 . - . ID=Phyra95931.7;Parent=Phyra95931;constitutive=1;rank=7 scaffold_58 . CDS 33603 34196 . - 0 ID=Phyra95931;Parent=Phyra95931;rank=6 scaffold_58 . exon 33603 34196 . - . ID=Phyra95931.6;Parent=Phyra95931;constitutive=1;rank=6 scaffold_58 . CDS 34293 34459 . - 0 ID=Phyra95931;Parent=Phyra95931;rank=5 scaffold_58 . exon 34293 34459 . - . ID=Phyra95931.5;Parent=Phyra95931;constitutive=1;ensembl_phase=1;rank=5 scaffold_58 . CDS 34530 35633 . - 0 ID=Phyra95931;Parent=Phyra95931;rank=4 scaffold_58 . exon 34530 35633 . - . ID=Phyra95931.4;Parent=Phyra95931;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_58 . CDS 35706 35823 . - 0 ID=Phyra95931;Parent=Phyra95931;rank=3 scaffold_58 . exon 35706 35823 . - . ID=Phyra95931.3;Parent=Phyra95931;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_58 . CDS 35853 35913 . - 0 ID=Phyra95931;Parent=Phyra95931;rank=2 scaffold_58 . exon 35853 35913 . - . ID=Phyra95931.2;Parent=Phyra95931;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 35989 36185 . - 0 ID=Phyra95931;Parent=Phyra95931;rank=1 scaffold_58 . exon 35989 36185 . - . ID=Phyra95931.1;Parent=Phyra95931;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 ensembl protein_coding_gene 36985 38083 . + . ID=Phyra95932;biotype=protein_coding;external_name=C_scaffold_58000005;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 36985 38083 . + . ID=Phyra95932;Parent=Phyra95932;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 36985 37341 . + 0 ID=Phyra95932;Parent=Phyra95932;rank=1 scaffold_58 . exon 36985 37341 . + . ID=Phyra95932.1;Parent=Phyra95932;constitutive=1;rank=1 scaffold_58 . CDS 37417 37692 . + 0 ID=Phyra95932;Parent=Phyra95932;rank=2 scaffold_58 . exon 37417 37692 . + . ID=Phyra95932.2;Parent=Phyra95932;constitutive=1;rank=2 scaffold_58 . CDS 37714 38083 . + 0 ID=Phyra95932;Parent=Phyra95932;rank=3 scaffold_58 . exon 37714 38083 . + . ID=Phyra95932.3;Parent=Phyra95932;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_58 . repeat_region 40543 40551 . ? . description=dust scaffold_58 . biological_region 46684 46686 0.999 + . logic_name=eponine scaffold_58 . biological_region 46733 46735 0.999 - . logic_name=eponine scaffold_58 ensembl protein_coding_gene 40832 48775 . - . ID=Phyra81252;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000015;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 40832 48775 . - . ID=Phyra81252;Parent=Phyra81252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 40832 48775 . - 0 ID=Phyra81252;Parent=Phyra81252;rank=1 scaffold_58 . exon 40832 48775 . - . ID=Phyra81252.1;Parent=Phyra81252;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 49398 50648 . + . ID=Phyra81253;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000016;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 49398 50648 . + . ID=Phyra81253;Parent=Phyra81253;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 49398 50648 . + 0 ID=Phyra81253;Parent=Phyra81253;rank=1 scaffold_58 . exon 49398 50648 . + . ID=Phyra81253.1;Parent=Phyra81253;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 50991 52328 . + . ID=Phyra81254;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000017;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 50991 52328 . + . ID=Phyra81254;Parent=Phyra81254;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 50991 52328 . + 0 ID=Phyra81254;Parent=Phyra81254;rank=1 scaffold_58 . exon 50991 52328 . + . ID=Phyra81254.1;Parent=Phyra81254;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 52402 54041 . - . ID=Phyra81255;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000018;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 52402 54041 . - . ID=Phyra81255;Parent=Phyra81255;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 52402 52576 . - 0 ID=Phyra81255;Parent=Phyra81255;rank=3 scaffold_58 . exon 52402 52576 . - . ID=Phyra81255.3;Parent=Phyra81255;constitutive=1;ensembl_phase=2;rank=3 scaffold_58 . CDS 52657 53485 . - 0 ID=Phyra81255;Parent=Phyra81255;rank=2 scaffold_58 . exon 52657 53485 . - . ID=Phyra81255.2;Parent=Phyra81255;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_58 . CDS 53591 54041 . - 0 ID=Phyra81255;Parent=Phyra81255;rank=1 scaffold_58 . exon 53591 54041 . - . ID=Phyra81255.1;Parent=Phyra81255;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 ensembl protein_coding_gene 55377 57774 . - . ID=Phyra81256;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000019;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 55377 57774 . - . ID=Phyra81256;Parent=Phyra81256;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 55377 55648 . - 0 ID=Phyra81256;Parent=Phyra81256;rank=8 scaffold_58 . exon 55377 55648 . - . ID=Phyra81256.8;Parent=Phyra81256;constitutive=1;ensembl_phase=1;rank=8 scaffold_58 . CDS 55713 55772 . - 0 ID=Phyra81256;Parent=Phyra81256;rank=7 scaffold_58 . exon 55713 55772 . - . ID=Phyra81256.7;Parent=Phyra81256;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_58 . CDS 55836 56260 . - 0 ID=Phyra81256;Parent=Phyra81256;rank=6 scaffold_58 . exon 55836 56260 . - . ID=Phyra81256.6;Parent=Phyra81256;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_58 . CDS 56322 56608 . - 0 ID=Phyra81256;Parent=Phyra81256;rank=5 scaffold_58 . exon 56322 56608 . - . ID=Phyra81256.5;Parent=Phyra81256;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_58 . CDS 56694 57079 . - 0 ID=Phyra81256;Parent=Phyra81256;rank=4 scaffold_58 . exon 56694 57079 . - . ID=Phyra81256.4;Parent=Phyra81256;constitutive=1;ensembl_phase=1;rank=4 scaffold_58 . CDS 57145 57307 . - 0 ID=Phyra81256;Parent=Phyra81256;rank=3 scaffold_58 . exon 57145 57307 . - . ID=Phyra81256.3;Parent=Phyra81256;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_58 . CDS 57381 57509 . - 0 ID=Phyra81256;Parent=Phyra81256;rank=2 scaffold_58 . exon 57381 57509 . - . ID=Phyra81256.2;Parent=Phyra81256;constitutive=1;rank=2 scaffold_58 . CDS 57577 57774 . - 0 ID=Phyra81256;Parent=Phyra81256;rank=1 scaffold_58 . exon 57577 57774 . - . ID=Phyra81256.1;Parent=Phyra81256;constitutive=1;rank=1 scaffold_58 . biological_region 59317 59322 0.999 - . logic_name=eponine scaffold_58 . biological_region 59377 59382 0.999 - . logic_name=eponine scaffold_58 ensembl protein_coding_gene 58783 60132 . + . ID=Phyra51050;biotype=protein_coding;external_name=gwEuk.58.65.1;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 58783 60132 . + . ID=Phyra51050;Parent=Phyra51050;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 58783 60132 . + 0 ID=Phyra51050;Parent=Phyra51050;rank=1 scaffold_58 . exon 58783 60132 . + . ID=Phyra51050.1;Parent=Phyra51050;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 60349 62497 . - . ID=Phyra81258;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000021;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 60349 62497 . - . ID=Phyra81258;Parent=Phyra81258;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 60349 60705 . - 0 ID=Phyra81258;Parent=Phyra81258;rank=4 scaffold_58 . exon 60349 60705 . - . ID=Phyra81258.4;Parent=Phyra81258;constitutive=1;rank=4 scaffold_58 . CDS 60775 61263 . - 0 ID=Phyra81258;Parent=Phyra81258;rank=3 scaffold_58 . exon 60775 61263 . - . ID=Phyra81258.3;Parent=Phyra81258;constitutive=1;rank=3 scaffold_58 . CDS 61325 61720 . - 0 ID=Phyra81258;Parent=Phyra81258;rank=2 scaffold_58 . exon 61325 61720 . - . ID=Phyra81258.2;Parent=Phyra81258;constitutive=1;rank=2 scaffold_58 . CDS 61790 62497 . - 0 ID=Phyra81258;Parent=Phyra81258;rank=1 scaffold_58 . exon 61790 62497 . - . ID=Phyra81258.1;Parent=Phyra81258;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 68096 69246 . - . ID=Phyra95935;biotype=protein_coding;external_name=C_scaffold_58000008;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 68096 69246 . - . ID=Phyra95935;Parent=Phyra95935;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 68096 68290 . - 0 ID=Phyra95935;Parent=Phyra95935;rank=2 scaffold_58 . exon 68096 68290 . - . ID=Phyra95935.2;Parent=Phyra95935;constitutive=1;rank=2 scaffold_58 . CDS 68968 69246 . - 0 ID=Phyra95935;Parent=Phyra95935;rank=1 scaffold_58 . repeat_region 71883 71935 . ? . description=trf scaffold_58 ensembl protein_coding_gene 77775 79010 . - . ID=Phyra71887;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_58000004;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 77775 79010 . - . ID=Phyra71887;Parent=Phyra71887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 77775 79010 . - 0 ID=Phyra71887;Parent=Phyra71887;rank=1 scaffold_58 . exon 77775 79010 . - . ID=Phyra71887.1;Parent=Phyra71887;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 71205 73290 . - . ID=Phyra81259;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000022;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 71205 73290 . - . ID=Phyra81259;Parent=Phyra81259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 71205 71402 . - 0 ID=Phyra81259;Parent=Phyra81259;rank=2 scaffold_58 . exon 71205 71402 . - . ID=Phyra81259.2;Parent=Phyra81259;constitutive=1;rank=2 scaffold_58 . CDS 71503 73290 . - 0 ID=Phyra81259;Parent=Phyra81259;rank=1 scaffold_58 . exon 71503 73290 . - . ID=Phyra81259.1;Parent=Phyra81259;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 73703 75172 . + . ID=Phyra81260;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000023;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 73703 75172 . + . ID=Phyra81260;Parent=Phyra81260;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 73703 73828 . + 0 ID=Phyra81260;Parent=Phyra81260;rank=1 scaffold_58 . exon 73703 73828 . + . ID=Phyra81260.1;Parent=Phyra81260;constitutive=1;rank=1 scaffold_58 . CDS 73912 73956 . + 0 ID=Phyra81260;Parent=Phyra81260;rank=2 scaffold_58 . exon 73912 73956 . + . ID=Phyra81260.2;Parent=Phyra81260;constitutive=1;rank=2 scaffold_58 . CDS 74018 74364 . + 0 ID=Phyra81260;Parent=Phyra81260;rank=3 scaffold_58 . exon 74018 74364 . + . ID=Phyra81260.3;Parent=Phyra81260;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_58 . CDS 74430 74580 . + 0 ID=Phyra81260;Parent=Phyra81260;rank=4 scaffold_58 . exon 74430 74580 . + . ID=Phyra81260.4;Parent=Phyra81260;constitutive=1;ensembl_phase=2;rank=4 scaffold_58 . CDS 74642 74994 . + 0 ID=Phyra81260;Parent=Phyra81260;rank=5 scaffold_58 . exon 74642 74994 . + . ID=Phyra81260.5;Parent=Phyra81260;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_58 . CDS 75076 75172 . + 0 ID=Phyra81260;Parent=Phyra81260;rank=6 scaffold_58 . exon 75076 75172 . + . ID=Phyra81260.6;Parent=Phyra81260;constitutive=1;ensembl_phase=2;rank=6 scaffold_58 ensembl protein_coding_gene 75730 77370 . - . ID=Phyra81261;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000024;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 75730 77370 . - . ID=Phyra81261;Parent=Phyra81261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 75730 77370 . - 0 ID=Phyra81261;Parent=Phyra81261;rank=1 scaffold_58 . exon 75730 77370 . - . ID=Phyra81261.1;Parent=Phyra81261;constitutive=1;rank=1 scaffold_58 . exon 68968 69246 . - . ID=Phyra95935.1;Parent=Phyra95935;constitutive=1;rank=1 scaffold_58 . biological_region 78142 78146 0.999 + . logic_name=eponine scaffold_58 . biological_region 78907 78912 0.999 + . logic_name=eponine scaffold_58 . biological_region 80269 80269 0.999 - . logic_name=eponine scaffold_58 . biological_region 81356 81357 0.999 - . logic_name=eponine scaffold_58 . biological_region 81411 81414 0.999 + . logic_name=eponine scaffold_58 . biological_region 84907 84910 0.999 - . logic_name=eponine scaffold_58 ensembl protein_coding_gene 79481 81052 . + . ID=Phyra71888;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_58000005;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 79481 81052 . + . ID=Phyra71888;Parent=Phyra71888;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 79481 79681 . + 0 ID=Phyra71888;Parent=Phyra71888;rank=1 scaffold_58 . exon 79481 79681 . + . ID=Phyra71888.1;Parent=Phyra71888;constitutive=1;rank=1 scaffold_58 . CDS 79712 81052 . + 0 ID=Phyra71888;Parent=Phyra71888;rank=2 scaffold_58 . exon 79712 81052 . + . ID=Phyra71888.2;Parent=Phyra71888;constitutive=1;rank=2 scaffold_58 ensembl protein_coding_gene 81386 86659 . + . ID=Phyra81264;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000027;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 81386 86659 . + . ID=Phyra81264;Parent=Phyra81264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 81386 81436 . + 0 ID=Phyra81264;Parent=Phyra81264;rank=1 scaffold_58 . exon 81386 81436 . + . ID=Phyra81264.1;Parent=Phyra81264;constitutive=1;rank=1 scaffold_58 . CDS 81507 84266 . + 0 ID=Phyra81264;Parent=Phyra81264;rank=2 scaffold_58 . exon 81507 84266 . + . ID=Phyra81264.2;Parent=Phyra81264;constitutive=1;rank=2 scaffold_58 . CDS 84361 84447 . + 0 ID=Phyra81264;Parent=Phyra81264;rank=3 scaffold_58 . exon 84361 84447 . + . ID=Phyra81264.3;Parent=Phyra81264;constitutive=1;rank=3 scaffold_58 . CDS 84759 85193 . + 0 ID=Phyra81264;Parent=Phyra81264;rank=4 scaffold_58 . exon 84759 85193 . + . ID=Phyra81264.4;Parent=Phyra81264;constitutive=1;rank=4 scaffold_58 . CDS 85484 85625 . + 0 ID=Phyra81264;Parent=Phyra81264;rank=5 scaffold_58 . exon 85484 85625 . + . ID=Phyra81264.5;Parent=Phyra81264;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_58 . CDS 85695 85753 . + 0 ID=Phyra81264;Parent=Phyra81264;rank=6 scaffold_58 . exon 85695 85753 . + . ID=Phyra81264.6;Parent=Phyra81264;constitutive=1;ensembl_phase=1;rank=6 scaffold_58 . CDS 85828 85896 . + 0 ID=Phyra81264;Parent=Phyra81264;rank=7 scaffold_58 . exon 85828 85896 . + . ID=Phyra81264.7;Parent=Phyra81264;constitutive=1;rank=7 scaffold_58 . CDS 85933 86010 . + 0 ID=Phyra81264;Parent=Phyra81264;rank=8 scaffold_58 . exon 85933 86010 . + . ID=Phyra81264.8;Parent=Phyra81264;constitutive=1;rank=8 scaffold_58 . CDS 86083 86120 . + 0 ID=Phyra81264;Parent=Phyra81264;rank=9 scaffold_58 . exon 86083 86120 . + . ID=Phyra81264.9;Parent=Phyra81264;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_58 . CDS 86192 86247 . + 0 ID=Phyra81264;Parent=Phyra81264;rank=10 scaffold_58 . exon 86192 86247 . + . ID=Phyra81264.10;Parent=Phyra81264;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_58 . CDS 86313 86374 . + 0 ID=Phyra81264;Parent=Phyra81264;rank=11 scaffold_58 . exon 86313 86374 . + . ID=Phyra81264.11;Parent=Phyra81264;constitutive=1;ensembl_phase=1;rank=11 scaffold_58 . CDS 86441 86659 . + 0 ID=Phyra81264;Parent=Phyra81264;rank=12 scaffold_58 . exon 86441 86659 . + . ID=Phyra81264.12;Parent=Phyra81264;constitutive=1;rank=12 scaffold_58 ensembl protein_coding_gene 86924 87961 . - . ID=Phyra81265;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000028;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 86924 87961 . - . ID=Phyra81265;Parent=Phyra81265;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 86924 87961 . - 0 ID=Phyra81265;Parent=Phyra81265;rank=1 scaffold_58 . exon 86924 87961 . - . ID=Phyra81265.1;Parent=Phyra81265;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 90514 91872 . - . ID=Phyra71889;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_58000006;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 90514 91872 . - . ID=Phyra71889;Parent=Phyra71889;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 90514 91872 . - 0 ID=Phyra71889;Parent=Phyra71889;rank=1 scaffold_58 . exon 90514 91872 . - . ID=Phyra71889.1;Parent=Phyra71889;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 92676 94034 . + . ID=Phyra71890;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_58000007;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 92676 94034 . + . ID=Phyra71890;Parent=Phyra71890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 92676 94034 . + 0 ID=Phyra71890;Parent=Phyra71890;rank=1 scaffold_58 . exon 92676 94034 . + . ID=Phyra71890.1;Parent=Phyra71890;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 88642 90215 . - . ID=Phyra81266;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000029;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 88642 90215 . - . ID=Phyra81266;Parent=Phyra81266;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 88642 89604 . - 0 ID=Phyra81266;Parent=Phyra81266;rank=4 scaffold_58 . exon 88642 89604 . - . ID=Phyra81266.4;Parent=Phyra81266;constitutive=1;rank=4 scaffold_58 . CDS 89671 89874 . - 0 ID=Phyra81266;Parent=Phyra81266;rank=3 scaffold_58 . exon 89671 89874 . - . ID=Phyra81266.3;Parent=Phyra81266;constitutive=1;rank=3 scaffold_58 . CDS 89938 90099 . - 0 ID=Phyra81266;Parent=Phyra81266;rank=2 scaffold_58 . exon 89938 90099 . - . ID=Phyra81266.2;Parent=Phyra81266;constitutive=1;rank=2 scaffold_58 . CDS 90171 90215 . - 0 ID=Phyra81266;Parent=Phyra81266;rank=1 scaffold_58 . exon 90171 90215 . - . ID=Phyra81266.1;Parent=Phyra81266;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 94290 95852 . + . ID=Phyra81269;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000032;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 94290 95852 . + . ID=Phyra81269;Parent=Phyra81269;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 94290 95852 . + 0 ID=Phyra81269;Parent=Phyra81269;rank=1 scaffold_58 . exon 94290 95852 . + . ID=Phyra81269.1;Parent=Phyra81269;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 96097 97264 . + . ID=Phyra81270;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000033;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 96097 97264 . + . ID=Phyra81270;Parent=Phyra81270;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 96097 96245 . + 0 ID=Phyra81270;Parent=Phyra81270;rank=1 scaffold_58 . exon 96097 96245 . + . ID=Phyra81270.1;Parent=Phyra81270;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . CDS 96327 96459 . + 0 ID=Phyra81270;Parent=Phyra81270;rank=2 scaffold_58 . exon 96327 96459 . + . ID=Phyra81270.2;Parent=Phyra81270;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 96530 96681 . + 0 ID=Phyra81270;Parent=Phyra81270;rank=3 scaffold_58 . exon 96530 96681 . + . ID=Phyra81270.3;Parent=Phyra81270;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_58 . CDS 96748 97264 . + 0 ID=Phyra81270;Parent=Phyra81270;rank=4 scaffold_58 . exon 96748 97264 . + . ID=Phyra81270.4;Parent=Phyra81270;constitutive=1;ensembl_phase=2;rank=4 scaffold_58 . biological_region 100668 100670 0.999 - . logic_name=eponine scaffold_58 . repeat_region 102370 102387 . ? . description=dust scaffold_58 . biological_region 103861 103866 0.999 + . logic_name=eponine scaffold_58 . repeat_region 104096 104134 . ? . description=trf scaffold_58 . biological_region 104178 104186 0.999 + . logic_name=eponine scaffold_58 . biological_region 104205 104207 0.999 + . logic_name=eponine scaffold_58 . biological_region 104288 104294 0.999 - . logic_name=eponine scaffold_58 . biological_region 104338 104341 0.999 - . logic_name=eponine scaffold_58 . biological_region 105012 105014 0.999 + . logic_name=eponine scaffold_58 . repeat_region 106570 106661 . + . description=(CTG)n scaffold_58 . repeat_region 106579 106659 . ? . description=trf scaffold_58 . repeat_region 106582 106647 . ? . description=trf scaffold_58 . repeat_region 106601 106652 . ? . description=trf scaffold_58 ensembl protein_coding_gene 97490 100114 . + . ID=Phyra81271;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000034;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 97490 100114 . + . ID=Phyra81271;Parent=Phyra81271;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 97490 97570 . + 0 ID=Phyra81271;Parent=Phyra81271;rank=1 scaffold_58 . exon 97490 97570 . + . ID=Phyra81271.1;Parent=Phyra81271;constitutive=1;rank=1 scaffold_58 . CDS 97649 97737 . + 0 ID=Phyra81271;Parent=Phyra81271;rank=2 scaffold_58 . exon 97649 97737 . + . ID=Phyra81271.2;Parent=Phyra81271;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_58 . CDS 97828 97896 . + 0 ID=Phyra81271;Parent=Phyra81271;rank=3 scaffold_58 . exon 97828 97896 . + . ID=Phyra81271.3;Parent=Phyra81271;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_58 . CDS 97957 98041 . + 0 ID=Phyra81271;Parent=Phyra81271;rank=4 scaffold_58 . exon 97957 98041 . + . ID=Phyra81271.4;Parent=Phyra81271;constitutive=1;ensembl_phase=2;rank=4 scaffold_58 . CDS 98110 98209 . + 0 ID=Phyra81271;Parent=Phyra81271;rank=5 scaffold_58 . exon 98110 98209 . + . ID=Phyra81271.5;Parent=Phyra81271;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_58 . CDS 98306 98397 . + 0 ID=Phyra81271;Parent=Phyra81271;rank=6 scaffold_58 . exon 98306 98397 . + . ID=Phyra81271.6;Parent=Phyra81271;constitutive=1;ensembl_phase=1;rank=6 scaffold_58 . CDS 98526 98665 . + 0 ID=Phyra81271;Parent=Phyra81271;rank=7 scaffold_58 . exon 98526 98665 . + . ID=Phyra81271.7;Parent=Phyra81271;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_58 . CDS 98738 98858 . + 0 ID=Phyra81271;Parent=Phyra81271;rank=8 scaffold_58 . exon 98738 98858 . + . ID=Phyra81271.8;Parent=Phyra81271;constitutive=1;ensembl_phase=2;rank=8 scaffold_58 . CDS 98923 98982 . + 0 ID=Phyra81271;Parent=Phyra81271;rank=9 scaffold_58 . exon 98923 98982 . + . ID=Phyra81271.9;Parent=Phyra81271;constitutive=1;rank=9 scaffold_58 . CDS 99387 99498 . + 0 ID=Phyra81271;Parent=Phyra81271;rank=10 scaffold_58 . exon 99387 99498 . + . ID=Phyra81271.10;Parent=Phyra81271;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_58 . CDS 99554 99621 . + 0 ID=Phyra81271;Parent=Phyra81271;rank=11 scaffold_58 . exon 99554 99621 . + . ID=Phyra81271.11;Parent=Phyra81271;constitutive=1;ensembl_phase=1;rank=11 scaffold_58 . CDS 99695 100114 . + 0 ID=Phyra81271;Parent=Phyra81271;rank=12 scaffold_58 . exon 99695 100114 . + . ID=Phyra81271.12;Parent=Phyra81271;constitutive=1;rank=12 scaffold_58 ensembl protein_coding_gene 100860 102644 . - . ID=Phyra81272;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000035;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 100860 102644 . - . ID=Phyra81272;Parent=Phyra81272;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 100860 100939 . - 0 ID=Phyra81272;Parent=Phyra81272;rank=6 scaffold_58 . exon 100860 100939 . - . ID=Phyra81272.6;Parent=Phyra81272;constitutive=1;ensembl_phase=1;rank=6 scaffold_58 . CDS 101034 101622 . - 0 ID=Phyra81272;Parent=Phyra81272;rank=5 scaffold_58 . exon 101034 101622 . - . ID=Phyra81272.5;Parent=Phyra81272;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_58 . CDS 101687 101962 . - 0 ID=Phyra81272;Parent=Phyra81272;rank=4 scaffold_58 . exon 101687 101962 . - . ID=Phyra81272.4;Parent=Phyra81272;constitutive=1;rank=4 scaffold_58 . CDS 102078 102245 . - 0 ID=Phyra81272;Parent=Phyra81272;rank=3 scaffold_58 . exon 102078 102245 . - . ID=Phyra81272.3;Parent=Phyra81272;constitutive=1;rank=3 scaffold_58 . CDS 102305 102361 . - 0 ID=Phyra81272;Parent=Phyra81272;rank=2 scaffold_58 . exon 102305 102361 . - . ID=Phyra81272.2;Parent=Phyra81272;constitutive=1;rank=2 scaffold_58 . CDS 102444 102644 . - 0 ID=Phyra81272;Parent=Phyra81272;rank=1 scaffold_58 . exon 102444 102644 . - . ID=Phyra81272.1;Parent=Phyra81272;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 103027 104364 . - . ID=Phyra81273;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000036;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 103027 104364 . - . ID=Phyra81273;Parent=Phyra81273;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 103027 104364 . - 0 ID=Phyra81273;Parent=Phyra81273;rank=1 scaffold_58 . exon 103027 104364 . - . ID=Phyra81273.1;Parent=Phyra81273;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 105510 107066 . - . ID=Phyra81274;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000037;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 105510 107066 . - . ID=Phyra81274;Parent=Phyra81274;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 105510 107066 . - 0 ID=Phyra81274;Parent=Phyra81274;rank=1 scaffold_58 . exon 105510 107066 . - . ID=Phyra81274.1;Parent=Phyra81274;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 113559 115271 . - . ID=Phyra71891;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_58000008;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 113559 115271 . - . ID=Phyra71891;Parent=Phyra71891;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 113559 115187 . - 0 ID=Phyra71891;Parent=Phyra71891;rank=2 scaffold_58 . exon 113559 115187 . - . ID=Phyra71891.2;Parent=Phyra71891;constitutive=1;rank=2 scaffold_58 . CDS 115209 115271 . - 0 ID=Phyra71891;Parent=Phyra71891;rank=1 scaffold_58 . exon 115209 115271 . - . ID=Phyra71891.1;Parent=Phyra71891;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 107772 109199 . + . ID=Phyra81275;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000038;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 107772 109199 . + . ID=Phyra81275;Parent=Phyra81275;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 107772 109199 . + 0 ID=Phyra81275;Parent=Phyra81275;rank=1 scaffold_58 . exon 107772 109199 . + . ID=Phyra81275.1;Parent=Phyra81275;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 109482 110441 . - . ID=Phyra81276;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000039;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 109482 110441 . - . ID=Phyra81276;Parent=Phyra81276;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 109482 109803 . - 0 ID=Phyra81276;Parent=Phyra81276;rank=4 scaffold_58 . exon 109482 109803 . - . ID=Phyra81276.4;Parent=Phyra81276;constitutive=1;ensembl_phase=2;rank=4 scaffold_58 . CDS 109874 110008 . - 0 ID=Phyra81276;Parent=Phyra81276;rank=3 scaffold_58 . exon 109874 110008 . - . ID=Phyra81276.3;Parent=Phyra81276;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_58 . CDS 110082 110208 . - 0 ID=Phyra81276;Parent=Phyra81276;rank=2 scaffold_58 . exon 110082 110208 . - . ID=Phyra81276.2;Parent=Phyra81276;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_58 . CDS 110282 110441 . - 0 ID=Phyra81276;Parent=Phyra81276;rank=1 scaffold_58 . exon 110282 110441 . - . ID=Phyra81276.1;Parent=Phyra81276;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 ensembl protein_coding_gene 110790 112233 . - . ID=Phyra81277;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000040;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 110790 112233 . - . ID=Phyra81277;Parent=Phyra81277;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 110790 111591 . - 0 ID=Phyra81277;Parent=Phyra81277;rank=3 scaffold_58 . exon 110790 111591 . - . ID=Phyra81277.3;Parent=Phyra81277;constitutive=1;ensembl_phase=2;rank=3 scaffold_58 . CDS 111655 111738 . - 0 ID=Phyra81277;Parent=Phyra81277;rank=2 scaffold_58 . exon 111655 111738 . - . ID=Phyra81277.2;Parent=Phyra81277;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_58 . CDS 111800 112233 . - 0 ID=Phyra81277;Parent=Phyra81277;rank=1 scaffold_58 . exon 111800 112233 . - . ID=Phyra81277.1;Parent=Phyra81277;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 ensembl protein_coding_gene 112764 113284 . + . ID=Phyra81278;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000041;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 112764 113284 . + . ID=Phyra81278;Parent=Phyra81278;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 112764 112865 . + 0 ID=Phyra81278;Parent=Phyra81278;rank=1 scaffold_58 . exon 112764 112865 . + . ID=Phyra81278.1;Parent=Phyra81278;constitutive=1;rank=1 scaffold_58 . CDS 113003 113057 . + 0 ID=Phyra81278;Parent=Phyra81278;rank=2 scaffold_58 . exon 113003 113057 . + . ID=Phyra81278.2;Parent=Phyra81278;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_58 . CDS 113118 113284 . + 0 ID=Phyra81278;Parent=Phyra81278;rank=3 scaffold_58 . exon 113118 113284 . + . ID=Phyra81278.3;Parent=Phyra81278;constitutive=1;ensembl_phase=1;rank=3 scaffold_58 ensembl protein_coding_gene 115827 117013 . - . ID=Phyra95942;biotype=protein_coding;external_name=C_scaffold_58000015;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 115827 117013 . - . ID=Phyra95942;Parent=Phyra95942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 115827 116418 . - 0 ID=Phyra95942;Parent=Phyra95942;rank=3 scaffold_58 . exon 115827 116418 . - . ID=Phyra95942.3;Parent=Phyra95942;constitutive=1;ensembl_phase=2;rank=3 scaffold_58 . CDS 116489 116824 . - 0 ID=Phyra95942;Parent=Phyra95942;rank=2 scaffold_58 . exon 116489 116824 . - . ID=Phyra95942.2;Parent=Phyra95942;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_58 . CDS 116907 117013 . - 0 ID=Phyra95942;Parent=Phyra95942;rank=1 scaffold_58 . biological_region 117248 117250 0.999 + . logic_name=eponine scaffold_58 . biological_region 117696 117700 0.999 + . logic_name=eponine scaffold_58 . biological_region 117843 117845 0.999 + . logic_name=eponine scaffold_58 . biological_region 118730 118731 0.999 + . logic_name=eponine scaffold_58 . biological_region 119334 119335 0.999 + . logic_name=eponine scaffold_58 . biological_region 119404 119407 0.999 + . logic_name=eponine scaffold_58 . biological_region 124099 124101 0.999 + . logic_name=eponine scaffold_58 . repeat_region 124375 124417 . ? . description=trf scaffold_58 . repeat_region 124412 124449 . ? . description=trf scaffold_58 . repeat_region 124412 124449 . ? . description=dust scaffold_58 . repeat_region 124412 124460 . ? . description=trf scaffold_58 . repeat_region 124456 124491 . ? . description=trf scaffold_58 . biological_region 124679 124681 0.999 - . logic_name=eponine scaffold_58 . repeat_region 126281 127678 . ? . description=dust scaffold_58 ensembl protein_coding_gene 123513 125702 . - . ID=Phyra81282;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000045;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 123513 125702 . - . ID=Phyra81282;Parent=Phyra81282;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 123513 125702 . - 0 ID=Phyra81282;Parent=Phyra81282;rank=1 scaffold_58 . exon 123513 125702 . - . ID=Phyra81282.1;Parent=Phyra81282;constitutive=1;rank=1 scaffold_58 . exon 116907 117013 . - . ID=Phyra95942.1;Parent=Phyra95942;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 ensembl protein_coding_gene 117731 121903 . + . ID=Phyra95943;biotype=protein_coding;external_name=C_scaffold_58000016;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 117731 121903 . + . ID=Phyra95943;Parent=Phyra95943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 117731 117826 . + 0 ID=Phyra95943;Parent=Phyra95943;rank=1 scaffold_58 . exon 117731 117826 . + . ID=Phyra95943.1;Parent=Phyra95943;constitutive=1;rank=1 scaffold_58 . CDS 117952 118123 . + 0 ID=Phyra95943;Parent=Phyra95943;rank=2 scaffold_58 . exon 117952 118123 . + . ID=Phyra95943.2;Parent=Phyra95943;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_58 . CDS 118251 118884 . + 0 ID=Phyra95943;Parent=Phyra95943;rank=3 scaffold_58 . exon 118251 118884 . + . ID=Phyra95943.3;Parent=Phyra95943;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_58 . CDS 119057 119110 . + 0 ID=Phyra95943;Parent=Phyra95943;rank=4 scaffold_58 . exon 119057 119110 . + . ID=Phyra95943.4;Parent=Phyra95943;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_58 . CDS 119221 119257 . + 0 ID=Phyra95943;Parent=Phyra95943;rank=5 scaffold_58 . exon 119221 119257 . + . ID=Phyra95943.5;Parent=Phyra95943;constitutive=1;ensembl_phase=2;rank=5 scaffold_58 . CDS 119332 119541 . + 0 ID=Phyra95943;Parent=Phyra95943;rank=6 scaffold_58 . exon 119332 119541 . + . ID=Phyra95943.6;Parent=Phyra95943;constitutive=1;rank=6 scaffold_58 . CDS 119608 119698 . + 0 ID=Phyra95943;Parent=Phyra95943;rank=7 scaffold_58 . exon 119608 119698 . + . ID=Phyra95943.7;Parent=Phyra95943;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_58 . CDS 119770 119877 . + 0 ID=Phyra95943;Parent=Phyra95943;rank=8 scaffold_58 . exon 119770 119877 . + . ID=Phyra95943.8;Parent=Phyra95943;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_58 . CDS 119957 120316 . + 0 ID=Phyra95943;Parent=Phyra95943;rank=9 scaffold_58 . exon 119957 120316 . + . ID=Phyra95943.9;Parent=Phyra95943;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_58 . CDS 120362 120427 . + 0 ID=Phyra95943;Parent=Phyra95943;rank=10 scaffold_58 . exon 120362 120427 . + . ID=Phyra95943.10;Parent=Phyra95943;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_58 . CDS 120492 120601 . + 0 ID=Phyra95943;Parent=Phyra95943;rank=11 scaffold_58 . exon 120492 120601 . + . ID=Phyra95943.11;Parent=Phyra95943;constitutive=1;ensembl_phase=1;rank=11 scaffold_58 . CDS 120680 120791 . + 0 ID=Phyra95943;Parent=Phyra95943;rank=12 scaffold_58 . exon 120680 120791 . + . ID=Phyra95943.12;Parent=Phyra95943;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_58 . CDS 120822 121098 . + 0 ID=Phyra95943;Parent=Phyra95943;rank=13 scaffold_58 . exon 120822 121098 . + . ID=Phyra95943.13;Parent=Phyra95943;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=13 scaffold_58 . CDS 121171 121228 . + 0 ID=Phyra95943;Parent=Phyra95943;rank=14 scaffold_58 . exon 121171 121228 . + . ID=Phyra95943.14;Parent=Phyra95943;constitutive=1;ensembl_phase=2;rank=14 scaffold_58 . CDS 121300 121504 . + 0 ID=Phyra95943;Parent=Phyra95943;rank=15 scaffold_58 . exon 121300 121504 . + . ID=Phyra95943.15;Parent=Phyra95943;constitutive=1;ensembl_end_phase=1;rank=15 scaffold_58 . CDS 121544 121767 . + 0 ID=Phyra95943;Parent=Phyra95943;rank=16 scaffold_58 . exon 121544 121767 . + . ID=Phyra95943.16;Parent=Phyra95943;constitutive=1;ensembl_phase=1;rank=16 scaffold_58 . CDS 121829 121903 . + 0 ID=Phyra95943;Parent=Phyra95943;rank=17 scaffold_58 . exon 121829 121903 . + . ID=Phyra95943.17;Parent=Phyra95943;constitutive=1;rank=17 scaffold_58 ensembl protein_coding_gene 127695 128424 . - . ID=Phyra81283;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000046;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 127695 128424 . - . ID=Phyra81283;Parent=Phyra81283;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 127695 127698 . - 0 ID=Phyra81283;Parent=Phyra81283;rank=2 scaffold_58 . exon 127695 127698 . - . ID=Phyra81283.2;Parent=Phyra81283;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 127724 128424 . - 0 ID=Phyra81283;Parent=Phyra81283;rank=1 scaffold_58 . exon 127724 128424 . - . ID=Phyra81283.1;Parent=Phyra81283;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . repeat_region 129039 139779 . ? . description=dust scaffold_58 . biological_region 139925 139928 0.999 + . logic_name=eponine scaffold_58 . repeat_region 140145 140169 . ? . description=trf scaffold_58 ensembl protein_coding_gene 139984 142265 . + . ID=Phyra81284;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000047;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 139984 142265 . + . ID=Phyra81284;Parent=Phyra81284;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 139984 141449 . + 0 ID=Phyra81284;Parent=Phyra81284;rank=1 scaffold_58 . exon 139984 141449 . + . ID=Phyra81284.1;Parent=Phyra81284;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . CDS 141533 141578 . + 0 ID=Phyra81284;Parent=Phyra81284;rank=2 scaffold_58 . exon 141533 141578 . + . ID=Phyra81284.2;Parent=Phyra81284;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 141711 142265 . + 0 ID=Phyra81284;Parent=Phyra81284;rank=3 scaffold_58 . exon 141711 142265 . + . ID=Phyra81284.3;Parent=Phyra81284;constitutive=1;rank=3 scaffold_58 ensembl protein_coding_gene 142380 143630 . - . ID=Phyra81285;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000048;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 142380 143630 . - . ID=Phyra81285;Parent=Phyra81285;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 142380 143630 . - 0 ID=Phyra81285;Parent=Phyra81285;rank=1 scaffold_58 . exon 142380 143630 . - . ID=Phyra81285.1;Parent=Phyra81285;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 143848 144744 . + . ID=Phyra81286;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000049;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 143848 144744 . + . ID=Phyra81286;Parent=Phyra81286;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 143848 144744 . + 0 ID=Phyra81286;Parent=Phyra81286;rank=1 scaffold_58 . exon 143848 144744 . + . ID=Phyra81286.1;Parent=Phyra81286;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 148341 152983 . - . ID=Phyra81287;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000050;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 148341 152983 . - . ID=Phyra81287;Parent=Phyra81287;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 148341 152411 . - 0 ID=Phyra81287;Parent=Phyra81287;rank=4 scaffold_58 . exon 148341 152411 . - . ID=Phyra81287.4;Parent=Phyra81287;constitutive=1;rank=4 scaffold_58 . CDS 152494 152661 . - 0 ID=Phyra81287;Parent=Phyra81287;rank=3 scaffold_58 . exon 152494 152661 . - . ID=Phyra81287.3;Parent=Phyra81287;constitutive=1;rank=3 scaffold_58 . CDS 152739 152894 . - 0 ID=Phyra81287;Parent=Phyra81287;rank=2 scaffold_58 . exon 152739 152894 . - . ID=Phyra81287.2;Parent=Phyra81287;constitutive=1;rank=2 scaffold_58 . CDS 152963 152983 . - 0 ID=Phyra81287;Parent=Phyra81287;rank=1 scaffold_58 . exon 152963 152983 . - . ID=Phyra81287.1;Parent=Phyra81287;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 155693 158317 . + . ID=Phyra81288;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000051;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 155693 158317 . + . ID=Phyra81288;Parent=Phyra81288;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 155693 158317 . + 0 ID=Phyra81288;Parent=Phyra81288;rank=1 scaffold_58 . exon 155693 158317 . + . ID=Phyra81288.1;Parent=Phyra81288;constitutive=1;rank=1 scaffold_58 . biological_region 158097 158103 0.999 + . logic_name=eponine scaffold_58 . biological_region 158810 158814 0.999 + . logic_name=eponine scaffold_58 . repeat_region 159748 159787 . ? . description=trf scaffold_58 . biological_region 159787 159788 0.999 + . logic_name=eponine scaffold_58 . biological_region 159997 159998 0.999 + . logic_name=eponine scaffold_58 . biological_region 160302 160305 0.999 + . logic_name=eponine scaffold_58 . biological_region 161002 161005 0.999 - . logic_name=eponine scaffold_58 . biological_region 165237 165237 0.999 + . logic_name=eponine scaffold_58 . biological_region 165259 165260 0.999 + . logic_name=eponine scaffold_58 . biological_region 165309 165312 0.999 + . logic_name=eponine scaffold_58 ensembl protein_coding_gene 159625 161781 . + . ID=Phyra51125;biotype=protein_coding;external_name=gwEuk.58.140.1;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 159625 161781 . + . ID=Phyra51125;Parent=Phyra51125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 159625 160251 . + 0 ID=Phyra51125;Parent=Phyra51125;rank=1 scaffold_58 . exon 159625 160251 . + . ID=Phyra51125.1;Parent=Phyra51125;constitutive=1;rank=1 scaffold_58 . CDS 160462 161781 . + 0 ID=Phyra51125;Parent=Phyra51125;rank=2 scaffold_58 . exon 160462 161781 . + . ID=Phyra51125.2;Parent=Phyra51125;constitutive=1;rank=2 scaffold_58 ensembl protein_coding_gene 163564 165417 . - . ID=Phyra81290;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000053;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 163564 165417 . - . ID=Phyra81290;Parent=Phyra81290;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 163564 165417 . - 0 ID=Phyra81290;Parent=Phyra81290;rank=1 scaffold_58 . exon 163564 165417 . - . ID=Phyra81290.1;Parent=Phyra81290;constitutive=1;rank=1 scaffold_58 . repeat_region 173419 173427 . ? . description=dust scaffold_58 ensembl protein_coding_gene 173691 175028 . + . ID=Phyra51154;biotype=protein_coding;external_name=gwEuk.58.169.1;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 173691 175028 . + . ID=Phyra51154;Parent=Phyra51154;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 173691 175028 . + 0 ID=Phyra51154;Parent=Phyra51154;rank=1 scaffold_58 . exon 173691 175028 . + . ID=Phyra51154.1;Parent=Phyra51154;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 165677 166812 . + . ID=Phyra71892;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_58000009;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 165677 166812 . + . ID=Phyra71892;Parent=Phyra71892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 165677 165709 . + 0 ID=Phyra71892;Parent=Phyra71892;rank=1 scaffold_58 . exon 165677 165709 . + . ID=Phyra71892.1;Parent=Phyra71892;constitutive=1;rank=1 scaffold_58 . CDS 165770 165929 . + 0 ID=Phyra71892;Parent=Phyra71892;rank=2 scaffold_58 . exon 165770 165929 . + . ID=Phyra71892.2;Parent=Phyra71892;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_58 . CDS 166014 166519 . + 0 ID=Phyra71892;Parent=Phyra71892;rank=3 scaffold_58 . exon 166014 166519 . + . ID=Phyra71892.3;Parent=Phyra71892;constitutive=1;ensembl_phase=1;rank=3 scaffold_58 . CDS 166603 166812 . + 0 ID=Phyra71892;Parent=Phyra71892;rank=4 scaffold_58 . exon 166603 166812 . + . ID=Phyra71892.4;Parent=Phyra71892;constitutive=1;rank=4 scaffold_58 ensembl protein_coding_gene 170033 170950 . - . ID=Phyra71893;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_58000010;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 170033 170950 . - . ID=Phyra71893;Parent=Phyra71893;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 170033 170950 . - 0 ID=Phyra71893;Parent=Phyra71893;rank=1 scaffold_58 . exon 170033 170950 . - . ID=Phyra71893.1;Parent=Phyra71893;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 171376 172737 . - . ID=Phyra71894;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_58000011;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 171376 172737 . - . ID=Phyra71894;Parent=Phyra71894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 171376 172737 . - 0 ID=Phyra71894;Parent=Phyra71894;rank=1 scaffold_58 . exon 171376 172737 . - . ID=Phyra71894.1;Parent=Phyra71894;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 167053 167682 . - . ID=Phyra81292;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000055;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 167053 167682 . - . ID=Phyra81292;Parent=Phyra81292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 167053 167682 . - 0 ID=Phyra81292;Parent=Phyra81292;rank=1 scaffold_58 . exon 167053 167682 . - . ID=Phyra81292.1;Parent=Phyra81292;constitutive=1;rank=1 scaffold_58 . biological_region 179735 179737 0.999 - . logic_name=eponine scaffold_58 . biological_region 180574 180577 0.999 - . logic_name=eponine scaffold_58 . biological_region 183731 183733 0.999 + . logic_name=eponine scaffold_58 ensembl protein_coding_gene 175613 177652 . + . ID=Phyra81296;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000059;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 175613 177652 . + . ID=Phyra81296;Parent=Phyra81296;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 175613 177652 . + 0 ID=Phyra81296;Parent=Phyra81296;rank=1 scaffold_58 . exon 175613 177652 . + . ID=Phyra81296.1;Parent=Phyra81296;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 177887 179920 . + . ID=Phyra81297;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000060;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 177887 179920 . + . ID=Phyra81297;Parent=Phyra81297;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 177887 179920 . + 0 ID=Phyra81297;Parent=Phyra81297;rank=1 scaffold_58 . exon 177887 179920 . + . ID=Phyra81297.1;Parent=Phyra81297;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 180462 181609 . + . ID=Phyra81298;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000061;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 180462 181609 . + . ID=Phyra81298;Parent=Phyra81298;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 180462 180982 . + 0 ID=Phyra81298;Parent=Phyra81298;rank=1 scaffold_58 . exon 180462 180982 . + . ID=Phyra81298.1;Parent=Phyra81298;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . CDS 181108 181609 . + 0 ID=Phyra81298;Parent=Phyra81298;rank=2 scaffold_58 . exon 181108 181609 . + . ID=Phyra81298.2;Parent=Phyra81298;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 ensembl protein_coding_gene 181883 182716 . - . ID=Phyra81299;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000062;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 181883 182716 . - . ID=Phyra81299;Parent=Phyra81299;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 181883 181934 . - 0 ID=Phyra81299;Parent=Phyra81299;rank=3 scaffold_58 . exon 181883 181934 . - . ID=Phyra81299.3;Parent=Phyra81299;constitutive=1;ensembl_phase=2;rank=3 scaffold_58 . CDS 181981 182241 . - 0 ID=Phyra81299;Parent=Phyra81299;rank=2 scaffold_58 . exon 181981 182241 . - . ID=Phyra81299.2;Parent=Phyra81299;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_58 . CDS 182316 182716 . - 0 ID=Phyra81299;Parent=Phyra81299;rank=1 scaffold_58 . exon 182316 182716 . - . ID=Phyra81299.1;Parent=Phyra81299;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 ensembl protein_coding_gene 183547 185574 . - . ID=Phyra81300;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000063;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 183547 185574 . - . ID=Phyra81300;Parent=Phyra81300;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 183547 185574 . - 0 ID=Phyra81300;Parent=Phyra81300;rank=1 scaffold_58 . exon 183547 185574 . - . ID=Phyra81300.1;Parent=Phyra81300;constitutive=1;rank=1 scaffold_58 . repeat_region 186747 186821 . ? . description=trf scaffold_58 . repeat_region 192181 192251 . ? . description=trf scaffold_58 . repeat_region 193722 193771 . ? . description=dust scaffold_58 ensembl protein_coding_gene 186021 187322 . + . ID=Phyra81301;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000064;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 186021 187322 . + . ID=Phyra81301;Parent=Phyra81301;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 186021 186149 . + 0 ID=Phyra81301;Parent=Phyra81301;rank=1 scaffold_58 . exon 186021 186149 . + . ID=Phyra81301.1;Parent=Phyra81301;constitutive=1;rank=1 scaffold_58 . CDS 186243 187322 . + 0 ID=Phyra81301;Parent=Phyra81301;rank=2 scaffold_58 . exon 186243 187322 . + . ID=Phyra81301.2;Parent=Phyra81301;constitutive=1;rank=2 scaffold_58 ensembl protein_coding_gene 187566 188407 . + . ID=Phyra81302;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000065;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 187566 188407 . + . ID=Phyra81302;Parent=Phyra81302;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 187566 187953 . + 0 ID=Phyra81302;Parent=Phyra81302;rank=1 scaffold_58 . exon 187566 187953 . + . ID=Phyra81302.1;Parent=Phyra81302;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . CDS 188043 188407 . + 0 ID=Phyra81302;Parent=Phyra81302;rank=2 scaffold_58 . exon 188043 188407 . + . ID=Phyra81302.2;Parent=Phyra81302;constitutive=1;ensembl_phase=1;rank=2 scaffold_58 ensembl protein_coding_gene 190794 193290 . - . ID=Phyra95946;biotype=protein_coding;external_name=C_scaffold_58000019;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 190794 193290 . - . ID=Phyra95946;Parent=Phyra95946;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 190794 190936 . - 0 ID=Phyra95946;Parent=Phyra95946;rank=8 scaffold_58 . exon 190794 190936 . - . ID=Phyra95946.8;Parent=Phyra95946;constitutive=1;ensembl_phase=1;rank=8 scaffold_58 . CDS 191024 191283 . - 0 ID=Phyra95946;Parent=Phyra95946;rank=7 scaffold_58 . exon 191024 191283 . - . ID=Phyra95946.7;Parent=Phyra95946;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_58 . CDS 191323 191526 . - 0 ID=Phyra95946;Parent=Phyra95946;rank=6 scaffold_58 . exon 191323 191526 . - . ID=Phyra95946.6;Parent=Phyra95946;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_58 . CDS 191598 191734 . - 0 ID=Phyra95946;Parent=Phyra95946;rank=5 scaffold_58 . exon 191598 191734 . - . ID=Phyra95946.5;Parent=Phyra95946;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_58 . CDS 191886 192320 . - 0 ID=Phyra95946;Parent=Phyra95946;rank=4 scaffold_58 . exon 191886 192320 . - . ID=Phyra95946.4;Parent=Phyra95946;constitutive=1;rank=4 scaffold_58 . CDS 192348 192908 . - 0 ID=Phyra95946;Parent=Phyra95946;rank=3 scaffold_58 . exon 192348 192908 . - . ID=Phyra95946.3;Parent=Phyra95946;constitutive=1;rank=3 scaffold_58 . CDS 193068 193160 . - 0 ID=Phyra95946;Parent=Phyra95946;rank=2 scaffold_58 . exon 193068 193160 . - . ID=Phyra95946.2;Parent=Phyra95946;constitutive=1;rank=2 scaffold_58 . CDS 193231 193290 . - 0 ID=Phyra95946;Parent=Phyra95946;rank=1 scaffold_58 . exon 193231 193290 . - . ID=Phyra95946.1;Parent=Phyra95946;constitutive=1;rank=1 scaffold_58 . biological_region 202853 202853 0.999 + . logic_name=eponine scaffold_58 ensembl protein_coding_gene 196614 197075 . + . ID=Phyra81304;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000067;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 196614 197075 . + . ID=Phyra81304;Parent=Phyra81304;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 196614 197075 . + 0 ID=Phyra81304;Parent=Phyra81304;rank=1 scaffold_58 . exon 196614 197075 . + . ID=Phyra81304.1;Parent=Phyra81304;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 199232 199543 . - . ID=Phyra81305;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000068;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 199232 199543 . - . ID=Phyra81305;Parent=Phyra81305;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 199232 199543 . - 0 ID=Phyra81305;Parent=Phyra81305;rank=1 scaffold_58 . exon 199232 199543 . - . ID=Phyra81305.1;Parent=Phyra81305;constitutive=1;rank=1 scaffold_58 . repeat_region 204858 204866 . ? . description=dust scaffold_58 . repeat_region 208787 208795 . ? . description=dust scaffold_58 . repeat_region 212009 212016 . ? . description=dust scaffold_58 . repeat_region 212760 212774 . ? . description=dust scaffold_58 . repeat_region 213490 213513 . ? . description=trf scaffold_58 . repeat_region 213627 213635 . ? . description=dust scaffold_58 . biological_region 220513 220514 0.999 + . logic_name=eponine scaffold_58 ensembl protein_coding_gene 220076 223669 . + . ID=Phyra71896;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_58000013;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 220076 223669 . + . ID=Phyra71896;Parent=Phyra71896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 220076 223669 . + 0 ID=Phyra71896;Parent=Phyra71896;rank=1 scaffold_58 . exon 220076 223669 . + . ID=Phyra71896.1;Parent=Phyra71896;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 216151 218802 . - . ID=Phyra81306;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000069;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 216151 218802 . - . ID=Phyra81306;Parent=Phyra81306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 216151 217234 . - 0 ID=Phyra81306;Parent=Phyra81306;rank=7 scaffold_58 . exon 216151 217234 . - . ID=Phyra81306.7;Parent=Phyra81306;constitutive=1;ensembl_phase=2;rank=7 scaffold_58 . CDS 217315 217698 . - 0 ID=Phyra81306;Parent=Phyra81306;rank=6 scaffold_58 . exon 217315 217698 . - . ID=Phyra81306.6;Parent=Phyra81306;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_58 . CDS 217766 217858 . - 0 ID=Phyra81306;Parent=Phyra81306;rank=5 scaffold_58 . exon 217766 217858 . - . ID=Phyra81306.5;Parent=Phyra81306;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_58 . CDS 217925 218007 . - 0 ID=Phyra81306;Parent=Phyra81306;rank=4 scaffold_58 . exon 217925 218007 . - . ID=Phyra81306.4;Parent=Phyra81306;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_58 . CDS 218077 218193 . - 0 ID=Phyra81306;Parent=Phyra81306;rank=3 scaffold_58 . exon 218077 218193 . - . ID=Phyra81306.3;Parent=Phyra81306;constitutive=1;rank=3 scaffold_58 . CDS 218257 218392 . - 0 ID=Phyra81306;Parent=Phyra81306;rank=2 scaffold_58 . exon 218257 218392 . - . ID=Phyra81306.2;Parent=Phyra81306;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 218465 218802 . - 0 ID=Phyra81306;Parent=Phyra81306;rank=1 scaffold_58 . exon 218465 218802 . - . ID=Phyra81306.1;Parent=Phyra81306;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 ensembl protein_coding_gene 219082 219717 . - . ID=Phyra81307;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000070;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 219082 219717 . - . ID=Phyra81307;Parent=Phyra81307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 219082 219717 . - 0 ID=Phyra81307;Parent=Phyra81307;rank=1 scaffold_58 . exon 219082 219717 . - . ID=Phyra81307.1;Parent=Phyra81307;constitutive=1;rank=1 scaffold_58 . repeat_region 227412 227492 . ? . description=trf scaffold_58 . repeat_region 227419 227492 . ? . description=trf scaffold_58 . repeat_region 227516 227605 . ? . description=dust scaffold_58 . repeat_region 231402 231435 . ? . description=trf scaffold_58 . repeat_region 231402 231446 . ? . description=dust scaffold_58 . repeat_region 232474 232482 . ? . description=dust scaffold_58 . repeat_region 233109 233116 . ? . description=dust scaffold_58 ensembl protein_coding_gene 224624 225508 . + . ID=Phyra95947;biotype=protein_coding;external_name=C_scaffold_58000020;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 224624 225508 . + . ID=Phyra95947;Parent=Phyra95947;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 224624 224715 . + 0 ID=Phyra95947;Parent=Phyra95947;rank=1 scaffold_58 . exon 224624 224715 . + . ID=Phyra95947.1;Parent=Phyra95947;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . CDS 224755 225508 . + 0 ID=Phyra95947;Parent=Phyra95947;rank=2 scaffold_58 . exon 224755 225508 . + . ID=Phyra95947.2;Parent=Phyra95947;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . biological_region 235268 235270 0.999 + . logic_name=eponine scaffold_58 . biological_region 241389 241389 0.999 - . logic_name=eponine scaffold_58 ensembl protein_coding_gene 241118 242804 . + . ID=Phyra81310;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000073;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 241118 242804 . + . ID=Phyra81310;Parent=Phyra81310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 241118 241125 . + 0 ID=Phyra81310;Parent=Phyra81310;rank=1 scaffold_58 . exon 241118 241125 . + . ID=Phyra81310.1;Parent=Phyra81310;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . CDS 241303 241455 . + 0 ID=Phyra81310;Parent=Phyra81310;rank=2 scaffold_58 . exon 241303 241455 . + . ID=Phyra81310.2;Parent=Phyra81310;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_58 . CDS 241648 242692 . + 0 ID=Phyra81310;Parent=Phyra81310;rank=3 scaffold_58 . exon 241648 242692 . + . ID=Phyra81310.3;Parent=Phyra81310;constitutive=1;ensembl_phase=2;rank=3 scaffold_58 . CDS 242796 242804 . + 0 ID=Phyra81310;Parent=Phyra81310;rank=4 scaffold_58 . exon 242796 242804 . + . ID=Phyra81310.4;Parent=Phyra81310;constitutive=1;rank=4 scaffold_58 . repeat_region 247851 247861 . ? . description=dust scaffold_58 . repeat_region 248105 248115 . ? . description=dust scaffold_58 . repeat_region 249186 249229 . ? . description=trf scaffold_58 . repeat_region 249537 249546 . ? . description=dust scaffold_58 . repeat_region 251161 251171 . ? . description=dust scaffold_58 . repeat_region 252518 252526 . ? . description=dust scaffold_58 . biological_region 256016 256019 0.999 + . logic_name=eponine scaffold_58 . biological_region 256880 256883 0.999 + . logic_name=eponine scaffold_58 . biological_region 257645 257649 0.999 + . logic_name=eponine scaffold_58 . biological_region 259326 259330 0.999 + . logic_name=eponine scaffold_58 . biological_region 259387 259391 0.999 + . logic_name=eponine scaffold_58 . biological_region 259489 259490 0.999 - . logic_name=eponine scaffold_58 . biological_region 259587 259591 0.999 + . logic_name=eponine scaffold_58 . biological_region 261341 261345 0.999 + . logic_name=eponine scaffold_58 ensembl protein_coding_gene 253270 254046 . + . ID=Phyra81311;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000074;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 253270 254046 . + . ID=Phyra81311;Parent=Phyra81311;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 253270 253371 . + 0 ID=Phyra81311;Parent=Phyra81311;rank=1 scaffold_58 . exon 253270 253371 . + . ID=Phyra81311.1;Parent=Phyra81311;constitutive=1;rank=1 scaffold_58 . CDS 253488 253937 . + 0 ID=Phyra81311;Parent=Phyra81311;rank=2 scaffold_58 . exon 253488 253937 . + . ID=Phyra81311.2;Parent=Phyra81311;constitutive=1;rank=2 scaffold_58 . CDS 254005 254046 . + 0 ID=Phyra81311;Parent=Phyra81311;rank=3 scaffold_58 . exon 254005 254046 . + . ID=Phyra81311.3;Parent=Phyra81311;constitutive=1;rank=3 scaffold_58 ensembl protein_coding_gene 254318 255534 . - . ID=Phyra81312;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000075;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 254318 255534 . - . ID=Phyra81312;Parent=Phyra81312;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 254318 254384 . - 0 ID=Phyra81312;Parent=Phyra81312;rank=2 scaffold_58 . exon 254318 254384 . - . ID=Phyra81312.2;Parent=Phyra81312;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 254450 255534 . - 0 ID=Phyra81312;Parent=Phyra81312;rank=1 scaffold_58 . exon 254450 255534 . - . ID=Phyra81312.1;Parent=Phyra81312;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 ensembl protein_coding_gene 255831 256773 . - . ID=Phyra81313;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000076;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 255831 256773 . - . ID=Phyra81313;Parent=Phyra81313;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 255831 255985 . - 0 ID=Phyra81313;Parent=Phyra81313;rank=5 scaffold_58 . exon 255831 255985 . - . ID=Phyra81313.5;Parent=Phyra81313;constitutive=1;ensembl_phase=1;rank=5 scaffold_58 . CDS 256068 256214 . - 0 ID=Phyra81313;Parent=Phyra81313;rank=4 scaffold_58 . exon 256068 256214 . - . ID=Phyra81313.4;Parent=Phyra81313;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_58 . CDS 256278 256471 . - 0 ID=Phyra81313;Parent=Phyra81313;rank=3 scaffold_58 . exon 256278 256471 . - . ID=Phyra81313.3;Parent=Phyra81313;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_58 . CDS 256524 256660 . - 0 ID=Phyra81313;Parent=Phyra81313;rank=2 scaffold_58 . exon 256524 256660 . - . ID=Phyra81313.2;Parent=Phyra81313;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_58 . CDS 256726 256773 . - 0 ID=Phyra81313;Parent=Phyra81313;rank=1 scaffold_58 . exon 256726 256773 . - . ID=Phyra81313.1;Parent=Phyra81313;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 256928 257977 . + . ID=Phyra81314;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000077;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 256928 257977 . + . ID=Phyra81314;Parent=Phyra81314;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 256928 257977 . + 0 ID=Phyra81314;Parent=Phyra81314;rank=1 scaffold_58 . exon 256928 257977 . + . ID=Phyra81314.1;Parent=Phyra81314;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 258400 259644 . - . ID=Phyra81315;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000078;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 258400 259644 . - . ID=Phyra81315;Parent=Phyra81315;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 258400 259644 . - 0 ID=Phyra81315;Parent=Phyra81315;rank=1 scaffold_58 . exon 258400 259644 . - . ID=Phyra81315.1;Parent=Phyra81315;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 261018 263111 . + . ID=Phyra81316;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000079;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 261018 263111 . + . ID=Phyra81316;Parent=Phyra81316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 261018 261203 . + 0 ID=Phyra81316;Parent=Phyra81316;rank=1 scaffold_58 . exon 261018 261203 . + . ID=Phyra81316.1;Parent=Phyra81316;constitutive=1;rank=1 scaffold_58 . CDS 261271 261525 . + 0 ID=Phyra81316;Parent=Phyra81316;rank=2 scaffold_58 . exon 261271 261525 . + . ID=Phyra81316.2;Parent=Phyra81316;constitutive=1;rank=2 scaffold_58 . CDS 261596 261706 . + 0 ID=Phyra81316;Parent=Phyra81316;rank=3 scaffold_58 . exon 261596 261706 . + . ID=Phyra81316.3;Parent=Phyra81316;constitutive=1;rank=3 scaffold_58 . CDS 261787 262129 . + 0 ID=Phyra81316;Parent=Phyra81316;rank=4 scaffold_58 . exon 261787 262129 . + . ID=Phyra81316.4;Parent=Phyra81316;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_58 . CDS 262204 262407 . + 0 ID=Phyra81316;Parent=Phyra81316;rank=5 scaffold_58 . exon 262204 262407 . + . ID=Phyra81316.5;Parent=Phyra81316;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_58 . CDS 262488 262702 . + 0 ID=Phyra81316;Parent=Phyra81316;rank=6 scaffold_58 . exon 262488 262702 . + . ID=Phyra81316.6;Parent=Phyra81316;constitutive=1;ensembl_phase=1;rank=6 scaffold_58 . CDS 262767 262843 . + 0 ID=Phyra81316;Parent=Phyra81316;rank=7 scaffold_58 . CDS 262922 263111 . + 0 ID=Phyra81316;Parent=Phyra81316;rank=8 scaffold_58 . repeat_region 270505 270572 . ? . description=trf scaffold_58 . repeat_region 270507 270569 . ? . description=dust scaffold_58 . repeat_region 270508 270584 . ? . description=trf scaffold_58 . exon 262767 262843 . + . ID=Phyra81316.7;Parent=Phyra81316;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_58 . exon 262922 263111 . + . ID=Phyra81316.8;Parent=Phyra81316;constitutive=1;ensembl_phase=2;rank=8 scaffold_58 ensembl protein_coding_gene 263431 265027 . + . ID=Phyra81317;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000080;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 263431 265027 . + . ID=Phyra81317;Parent=Phyra81317;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 263431 264601 . + 0 ID=Phyra81317;Parent=Phyra81317;rank=1 scaffold_58 . exon 263431 264601 . + . ID=Phyra81317.1;Parent=Phyra81317;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . CDS 264677 264801 . + 0 ID=Phyra81317;Parent=Phyra81317;rank=2 scaffold_58 . exon 264677 264801 . + . ID=Phyra81317.2;Parent=Phyra81317;constitutive=1;ensembl_phase=1;rank=2 scaffold_58 . CDS 264950 264978 . + 0 ID=Phyra81317;Parent=Phyra81317;rank=3 scaffold_58 . exon 264950 264978 . + . ID=Phyra81317.3;Parent=Phyra81317;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_58 . CDS 265012 265027 . + 0 ID=Phyra81317;Parent=Phyra81317;rank=4 scaffold_58 . exon 265012 265027 . + . ID=Phyra81317.4;Parent=Phyra81317;constitutive=1;ensembl_phase=2;rank=4 scaffold_58 ensembl protein_coding_gene 270283 274590 . + . ID=Phyra81318;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000081;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 270283 274590 . + . ID=Phyra81318;Parent=Phyra81318;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 270283 271336 . + 0 ID=Phyra81318;Parent=Phyra81318;rank=1 scaffold_58 . exon 270283 271336 . + . ID=Phyra81318.1;Parent=Phyra81318;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . CDS 271664 272099 . + 0 ID=Phyra81318;Parent=Phyra81318;rank=2 scaffold_58 . exon 271664 272099 . + . ID=Phyra81318.2;Parent=Phyra81318;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_58 . CDS 272325 274024 . + 0 ID=Phyra81318;Parent=Phyra81318;rank=3 scaffold_58 . exon 272325 274024 . + . ID=Phyra81318.3;Parent=Phyra81318;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_58 . CDS 274241 274590 . + 0 ID=Phyra81318;Parent=Phyra81318;rank=4 scaffold_58 . biological_region 272897 272901 0.999 + . logic_name=eponine scaffold_58 . biological_region 277056 277063 0.999 - . logic_name=eponine scaffold_58 . biological_region 277111 277115 0.999 + . logic_name=eponine scaffold_58 . biological_region 280096 280096 0.999 - . logic_name=eponine scaffold_58 ensembl protein_coding_gene 274696 276079 . + . ID=Phyra71897;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_58000014;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 274696 276079 . + . ID=Phyra71897;Parent=Phyra71897;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 274696 275903 . + 0 ID=Phyra71897;Parent=Phyra71897;rank=1 scaffold_58 . exon 274696 275903 . + . ID=Phyra71897.1;Parent=Phyra71897;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . CDS 275977 276079 . + 0 ID=Phyra71897;Parent=Phyra71897;rank=2 scaffold_58 . exon 275977 276079 . + . ID=Phyra71897.2;Parent=Phyra71897;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . exon 274241 274590 . + . ID=Phyra81318.4;Parent=Phyra81318;constitutive=1;ensembl_phase=1;rank=4 scaffold_58 ensembl protein_coding_gene 276183 278749 . - . ID=Phyra81320;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000083;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 276183 278749 . - . ID=Phyra81320;Parent=Phyra81320;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 276183 278749 . - 0 ID=Phyra81320;Parent=Phyra81320;rank=1 scaffold_58 . exon 276183 278749 . - . ID=Phyra81320.1;Parent=Phyra81320;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 ensembl protein_coding_gene 278962 281334 . - . ID=Phyra81321;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000084;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 278962 281334 . - . ID=Phyra81321;Parent=Phyra81321;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 278962 281334 . - 0 ID=Phyra81321;Parent=Phyra81321;rank=1 scaffold_58 . exon 278962 281334 . - . ID=Phyra81321.1;Parent=Phyra81321;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 281549 285005 . + . ID=Phyra95949;biotype=protein_coding;external_name=C_scaffold_58000022;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 281549 285005 . + . ID=Phyra95949;Parent=Phyra95949;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 281549 281694 . + 0 ID=Phyra95949;Parent=Phyra95949;rank=1 scaffold_58 . exon 281549 281694 . + . ID=Phyra95949.1;Parent=Phyra95949;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . CDS 281814 282079 . + 0 ID=Phyra95949;Parent=Phyra95949;rank=2 scaffold_58 . exon 281814 282079 . + . ID=Phyra95949.2;Parent=Phyra95949;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 282145 282257 . + 0 ID=Phyra95949;Parent=Phyra95949;rank=3 scaffold_58 . exon 282145 282257 . + . ID=Phyra95949.3;Parent=Phyra95949;constitutive=1;ensembl_phase=1;rank=3 scaffold_58 . CDS 282321 282586 . + 0 ID=Phyra95949;Parent=Phyra95949;rank=4 scaffold_58 . CDS 282657 282720 . + 0 ID=Phyra95949;Parent=Phyra95949;rank=5 scaffold_58 . CDS 282892 283534 . + 0 ID=Phyra95949;Parent=Phyra95949;rank=6 scaffold_58 . CDS 283607 283791 . + 0 ID=Phyra95949;Parent=Phyra95949;rank=7 scaffold_58 . CDS 283868 283994 . + 0 ID=Phyra95949;Parent=Phyra95949;rank=8 scaffold_58 . CDS 284142 284381 . + 0 ID=Phyra95949;Parent=Phyra95949;rank=9 scaffold_58 . CDS 284757 285005 . + 0 ID=Phyra95949;Parent=Phyra95949;rank=10 scaffold_58 . repeat_region 283382 283409 . ? . description=dust scaffold_58 . repeat_region 289026 289066 . ? . description=trf scaffold_58 . repeat_region 289227 289313 . ? . description=trf scaffold_58 . repeat_region 289228 289314 . ? . description=trf scaffold_58 . repeat_region 289231 289292 . ? . description=trf scaffold_58 . repeat_region 290679 290716 . ? . description=trf scaffold_58 . repeat_region 290679 290716 . ? . description=dust scaffold_58 . repeat_region 291696 291715 . ? . description=trf scaffold_58 . repeat_region 291861 291897 . ? . description=trf scaffold_58 . repeat_region 291930 291993 . ? . description=dust scaffold_58 ensembl protein_coding_gene 286455 287762 . - . ID=Phyra51019;biotype=protein_coding;external_name=gwEuk.58.34.1;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 286455 287762 . - . ID=Phyra51019;Parent=Phyra51019;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 286455 287762 . - 0 ID=Phyra51019;Parent=Phyra51019;rank=1 scaffold_58 . exon 286455 287762 . - . ID=Phyra51019.1;Parent=Phyra51019;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 289965 291223 . - . ID=Phyra71899;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_58000016;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 289965 291223 . - . ID=Phyra71899;Parent=Phyra71899;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 289965 290007 . - 0 ID=Phyra71899;Parent=Phyra71899;rank=5 scaffold_58 . exon 289965 290007 . - . ID=Phyra71899.5;Parent=Phyra71899;constitutive=1;ensembl_phase=2;rank=5 scaffold_58 . CDS 290079 290185 . - 0 ID=Phyra71899;Parent=Phyra71899;rank=4 scaffold_58 . exon 290079 290185 . - . ID=Phyra71899.4;Parent=Phyra71899;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_58 . CDS 290266 290394 . - 0 ID=Phyra71899;Parent=Phyra71899;rank=3 scaffold_58 . exon 290266 290394 . - . ID=Phyra71899.3;Parent=Phyra71899;constitutive=1;rank=3 scaffold_58 . CDS 290465 290630 . - 0 ID=Phyra71899;Parent=Phyra71899;rank=2 scaffold_58 . exon 290465 290630 . - . ID=Phyra71899.2;Parent=Phyra71899;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 290730 291223 . - 0 ID=Phyra71899;Parent=Phyra71899;rank=1 scaffold_58 . exon 290730 291223 . - . ID=Phyra71899.1;Parent=Phyra71899;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 ensembl protein_coding_gene 291745 293266 . + . ID=Phyra81327;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000090;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 291745 293266 . + . ID=Phyra81327;Parent=Phyra81327;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 291745 291855 . + 0 ID=Phyra81327;Parent=Phyra81327;rank=1 scaffold_58 . exon 291745 291855 . + . ID=Phyra81327.1;Parent=Phyra81327;constitutive=1;rank=1 scaffold_58 . CDS 291909 292119 . + 0 ID=Phyra81327;Parent=Phyra81327;rank=2 scaffold_58 . exon 291909 292119 . + . ID=Phyra81327.2;Parent=Phyra81327;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_58 . CDS 292179 292989 . + 0 ID=Phyra81327;Parent=Phyra81327;rank=3 scaffold_58 . CDS 293209 293266 . + 0 ID=Phyra81327;Parent=Phyra81327;rank=4 scaffold_58 . exon 282321 282586 . + . ID=Phyra95949.4;Parent=Phyra95949;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_58 . exon 282657 282720 . + . ID=Phyra95949.5;Parent=Phyra95949;constitutive=1;ensembl_phase=2;rank=5 scaffold_58 . exon 282892 283534 . + . ID=Phyra95949.6;Parent=Phyra95949;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_58 . exon 283607 283791 . + . ID=Phyra95949.7;Parent=Phyra95949;constitutive=1;ensembl_phase=1;rank=7 scaffold_58 . exon 283868 283994 . + . ID=Phyra95949.8;Parent=Phyra95949;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_58 . exon 284142 284381 . + . ID=Phyra95949.9;Parent=Phyra95949;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_58 . exon 284757 285005 . + . ID=Phyra95949.10;Parent=Phyra95949;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_58 . biological_region 296244 296246 0.999 - . logic_name=eponine scaffold_58 . biological_region 296272 296274 0.999 - . logic_name=eponine scaffold_58 . biological_region 296571 296572 0.999 - . logic_name=eponine scaffold_58 . biological_region 296751 296756 0.999 + . logic_name=eponine scaffold_58 . biological_region 296773 296776 0.999 + . logic_name=eponine scaffold_58 . biological_region 297882 297883 0.999 + . logic_name=eponine scaffold_58 . biological_region 298078 298084 0.999 - . logic_name=eponine scaffold_58 . biological_region 298499 298504 0.999 + . logic_name=eponine scaffold_58 . biological_region 298563 298564 0.999 + . logic_name=eponine scaffold_58 . exon 292179 292989 . + . ID=Phyra81327.3;Parent=Phyra81327;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_58 . exon 293209 293266 . + . ID=Phyra81327.4;Parent=Phyra81327;constitutive=1;ensembl_phase=2;rank=4 scaffold_58 ensembl protein_coding_gene 293554 295746 . - . ID=Phyra81328;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000091;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 293554 295746 . - . ID=Phyra81328;Parent=Phyra81328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 293554 295746 . - 0 ID=Phyra81328;Parent=Phyra81328;rank=1 scaffold_58 . exon 293554 295746 . - . ID=Phyra81328.1;Parent=Phyra81328;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 296702 298139 . - . ID=Phyra81329;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000092;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 296702 298139 . - . ID=Phyra81329;Parent=Phyra81329;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 296702 296984 . - 0 ID=Phyra81329;Parent=Phyra81329;rank=2 scaffold_58 . exon 296702 296984 . - . ID=Phyra81329.2;Parent=Phyra81329;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 297061 298139 . - 0 ID=Phyra81329;Parent=Phyra81329;rank=1 scaffold_58 . exon 297061 298139 . - . ID=Phyra81329.1;Parent=Phyra81329;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . repeat_region 301883 304892 . ? . description=dust scaffold_58 . repeat_region 305431 305461 . ? . description=trf scaffold_58 . repeat_region 306355 307259 . ? . description=dust scaffold_58 . repeat_region 308660 308667 . ? . description=dust scaffold_58 . repeat_region 311092 311100 . ? . description=dust scaffold_58 ensembl protein_coding_gene 305056 307459 . + . ID=Phyra81330;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000093;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 305056 307459 . + . ID=Phyra81330;Parent=Phyra81330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 305056 305206 . + 0 ID=Phyra81330;Parent=Phyra81330;rank=1 scaffold_58 . exon 305056 305206 . + . ID=Phyra81330.1;Parent=Phyra81330;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . CDS 305264 305761 . + 0 ID=Phyra81330;Parent=Phyra81330;rank=2 scaffold_58 . exon 305264 305761 . + . ID=Phyra81330.2;Parent=Phyra81330;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_58 . CDS 305853 306350 . + 0 ID=Phyra81330;Parent=Phyra81330;rank=3 scaffold_58 . exon 305853 306350 . + . ID=Phyra81330.3;Parent=Phyra81330;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_58 . CDS 307371 307459 . + 0 ID=Phyra81330;Parent=Phyra81330;rank=4 scaffold_58 . exon 307371 307459 . + . ID=Phyra81330.4;Parent=Phyra81330;constitutive=1;ensembl_phase=1;rank=4 scaffold_58 . biological_region 312632 312633 0.999 - . logic_name=eponine scaffold_58 . biological_region 312693 312697 0.999 - . logic_name=eponine scaffold_58 . biological_region 319126 319132 0.999 - . logic_name=eponine scaffold_58 ensembl protein_coding_gene 313138 313814 . - . ID=Phyra81331;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000094;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 313138 313814 . - . ID=Phyra81331;Parent=Phyra81331;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 313138 313329 . - 0 ID=Phyra81331;Parent=Phyra81331;rank=3 scaffold_58 . exon 313138 313329 . - . ID=Phyra81331.3;Parent=Phyra81331;constitutive=1;rank=3 scaffold_58 . CDS 313393 313538 . - 0 ID=Phyra81331;Parent=Phyra81331;rank=2 scaffold_58 . exon 313393 313538 . - . ID=Phyra81331.2;Parent=Phyra81331;constitutive=1;ensembl_phase=1;rank=2 scaffold_58 . CDS 313613 313814 . - 0 ID=Phyra81331;Parent=Phyra81331;rank=1 scaffold_58 . exon 313613 313814 . - . ID=Phyra81331.1;Parent=Phyra81331;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 ensembl protein_coding_gene 320888 323013 . - . ID=Phyra81333;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000096;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 320888 323013 . - . ID=Phyra81333;Parent=Phyra81333;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 320888 321301 . - 0 ID=Phyra81333;Parent=Phyra81333;rank=6 scaffold_58 . exon 320888 321301 . - . ID=Phyra81333.6;Parent=Phyra81333;constitutive=1;rank=6 scaffold_58 . CDS 321379 321618 . - 0 ID=Phyra81333;Parent=Phyra81333;rank=5 scaffold_58 . CDS 321686 321862 . - 0 ID=Phyra81333;Parent=Phyra81333;rank=4 scaffold_58 . CDS 321941 322161 . - 0 ID=Phyra81333;Parent=Phyra81333;rank=3 scaffold_58 . CDS 322229 322382 . - 0 ID=Phyra81333;Parent=Phyra81333;rank=2 scaffold_58 . CDS 322447 323013 . - 0 ID=Phyra81333;Parent=Phyra81333;rank=1 scaffold_58 ensembl protein_coding_gene 314236 316299 . + . ID=Phyra95950;biotype=protein_coding;external_name=C_scaffold_58000023;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 314236 316299 . + . ID=Phyra95950;Parent=Phyra95950;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 314236 314415 . + 0 ID=Phyra95950;Parent=Phyra95950;rank=1 scaffold_58 . exon 314236 314415 . + . ID=Phyra95950.1;Parent=Phyra95950;constitutive=1;rank=1 scaffold_58 . CDS 314492 315009 . + 0 ID=Phyra95950;Parent=Phyra95950;rank=2 scaffold_58 . exon 314492 315009 . + . ID=Phyra95950.2;Parent=Phyra95950;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_58 . CDS 315055 315196 . + 0 ID=Phyra95950;Parent=Phyra95950;rank=3 scaffold_58 . exon 315055 315196 . + . ID=Phyra95950.3;Parent=Phyra95950;constitutive=1;ensembl_phase=2;rank=3 scaffold_58 . CDS 315263 315642 . + 0 ID=Phyra95950;Parent=Phyra95950;rank=4 scaffold_58 . exon 315263 315642 . + . ID=Phyra95950.4;Parent=Phyra95950;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_58 . CDS 315972 316033 . + 0 ID=Phyra95950;Parent=Phyra95950;rank=5 scaffold_58 . exon 315972 316033 . + . ID=Phyra95950.5;Parent=Phyra95950;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_58 . CDS 316196 316299 . + 0 ID=Phyra95950;Parent=Phyra95950;rank=6 scaffold_58 . exon 316196 316299 . + . ID=Phyra95950.6;Parent=Phyra95950;constitutive=1;ensembl_phase=1;rank=6 scaffold_58 ensembl protein_coding_gene 317013 319152 . - . ID=Phyra95951;biotype=protein_coding;external_name=C_scaffold_58000024;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 317013 319152 . - . ID=Phyra95951;Parent=Phyra95951;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 317013 317110 . - 0 ID=Phyra95951;Parent=Phyra95951;rank=10 scaffold_58 . exon 317013 317110 . - . ID=Phyra95951.10;Parent=Phyra95951;constitutive=1;ensembl_phase=1;rank=10 scaffold_58 . CDS 317168 317256 . - 0 ID=Phyra95951;Parent=Phyra95951;rank=9 scaffold_58 . exon 317168 317256 . - . ID=Phyra95951.9;Parent=Phyra95951;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_58 . CDS 317334 317393 . - 0 ID=Phyra95951;Parent=Phyra95951;rank=8 scaffold_58 . exon 317334 317393 . - . ID=Phyra95951.8;Parent=Phyra95951;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_58 . CDS 317459 317527 . - 0 ID=Phyra95951;Parent=Phyra95951;rank=7 scaffold_58 . exon 317459 317527 . - . ID=Phyra95951.7;Parent=Phyra95951;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_58 . CDS 317601 317761 . - 0 ID=Phyra95951;Parent=Phyra95951;rank=6 scaffold_58 . exon 317601 317761 . - . ID=Phyra95951.6;Parent=Phyra95951;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_58 . CDS 317830 317970 . - 0 ID=Phyra95951;Parent=Phyra95951;rank=5 scaffold_58 . exon 317830 317970 . - . ID=Phyra95951.5;Parent=Phyra95951;constitutive=1;rank=5 scaffold_58 . CDS 318178 318325 . - 0 ID=Phyra95951;Parent=Phyra95951;rank=4 scaffold_58 . exon 318178 318325 . - . ID=Phyra95951.4;Parent=Phyra95951;constitutive=1;ensembl_phase=2;rank=4 scaffold_58 . CDS 318390 318489 . - 0 ID=Phyra95951;Parent=Phyra95951;rank=3 scaffold_58 . exon 318390 318489 . - . ID=Phyra95951.3;Parent=Phyra95951;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_58 . CDS 318558 318872 . - 0 ID=Phyra95951;Parent=Phyra95951;rank=2 scaffold_58 . exon 318558 318872 . - . ID=Phyra95951.2;Parent=Phyra95951;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_58 . CDS 318918 319152 . - 0 ID=Phyra95951;Parent=Phyra95951;rank=1 scaffold_58 . exon 318918 319152 . - . ID=Phyra95951.1;Parent=Phyra95951;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . repeat_region 326976 327041 . ? . description=trf scaffold_58 . repeat_region 326977 327043 . ? . description=dust scaffold_58 . repeat_region 326985 327040 . ? . description=trf scaffold_58 . repeat_region 327275 327337 . ? . description=dust scaffold_58 . repeat_region 327286 327335 . ? . description=trf scaffold_58 . repeat_region 327402 327489 . ? . description=dust scaffold_58 . repeat_region 327426 327469 . ? . description=trf scaffold_58 . repeat_region 327426 327470 . ? . description=trf scaffold_58 . repeat_region 330405 330446 . ? . description=trf scaffold_58 . repeat_region 330661 330698 . ? . description=trf scaffold_58 ensembl protein_coding_gene 324091 325710 . - . ID=Phyra51033;biotype=protein_coding;external_name=gwEuk.58.48.1;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 324091 325710 . - . ID=Phyra51033;Parent=Phyra51033;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 324091 325167 . - 0 ID=Phyra51033;Parent=Phyra51033;rank=4 scaffold_58 . exon 324091 325167 . - . ID=Phyra51033.4;Parent=Phyra51033;constitutive=1;rank=4 scaffold_58 . CDS 325264 325341 . - 0 ID=Phyra51033;Parent=Phyra51033;rank=3 scaffold_58 . exon 325264 325341 . - . ID=Phyra51033.3;Parent=Phyra51033;constitutive=1;rank=3 scaffold_58 . CDS 325414 325458 . - 0 ID=Phyra51033;Parent=Phyra51033;rank=2 scaffold_58 . exon 325414 325458 . - . ID=Phyra51033.2;Parent=Phyra51033;constitutive=1;rank=2 scaffold_58 . CDS 325534 325710 . - 0 ID=Phyra51033;Parent=Phyra51033;rank=1 scaffold_58 . exon 325534 325710 . - . ID=Phyra51033.1;Parent=Phyra51033;constitutive=1;rank=1 scaffold_58 . exon 321379 321618 . - . ID=Phyra81333.5;Parent=Phyra81333;constitutive=1;rank=5 scaffold_58 . exon 321686 321862 . - . ID=Phyra81333.4;Parent=Phyra81333;constitutive=1;rank=4 scaffold_58 . exon 321941 322161 . - . ID=Phyra81333.3;Parent=Phyra81333;constitutive=1;ensembl_phase=1;rank=3 scaffold_58 . exon 322229 322382 . - . ID=Phyra81333.2;Parent=Phyra81333;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_58 . exon 322447 323013 . - . ID=Phyra81333.1;Parent=Phyra81333;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 323172 323772 . + . ID=Phyra81334;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000097;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 323172 323772 . + . ID=Phyra81334;Parent=Phyra81334;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 323172 323373 . + 0 ID=Phyra81334;Parent=Phyra81334;rank=1 scaffold_58 . exon 323172 323373 . + . ID=Phyra81334.1;Parent=Phyra81334;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . CDS 323447 323772 . + 0 ID=Phyra81334;Parent=Phyra81334;rank=2 scaffold_58 . exon 323447 323772 . + . ID=Phyra81334.2;Parent=Phyra81334;constitutive=1;ensembl_phase=1;rank=2 scaffold_58 ensembl protein_coding_gene 327979 328863 . + . ID=Phyra81335;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000098;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 327979 328863 . + . ID=Phyra81335;Parent=Phyra81335;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 327979 328863 . + 0 ID=Phyra81335;Parent=Phyra81335;rank=1 scaffold_58 . exon 327979 328863 . + . ID=Phyra81335.1;Parent=Phyra81335;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 329387 330190 . - . ID=Phyra81336;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_58000099;logic_name=jgi_phyra1 scaffold_58 ensembl transcript 329387 330190 . - . ID=Phyra81336;Parent=Phyra81336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_58 . CDS 329387 329398 . - 0 ID=Phyra81336;Parent=Phyra81336;rank=3 scaffold_58 . exon 329387 329398 . - . ID=Phyra81336.3;Parent=Phyra81336;constitutive=1;rank=3 scaffold_58 . CDS 329480 329737 . - 0 ID=Phyra81336;Parent=Phyra81336;rank=2 scaffold_58 . exon 329480 329737 . - . ID=Phyra81336.2;Parent=Phyra81336;constitutive=1;rank=2 scaffold_58 . CDS 329861 330190 . - 0 ID=Phyra81336;Parent=Phyra81336;rank=1 scaffold_58 . exon 329861 330190 . - . ID=Phyra81336.1;Parent=Phyra81336;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_62 1 334142 scaffold_62 . repeat_region 400 488 . ? . description=dust scaffold_62 . repeat_region 402 428 . ? . description=trf scaffold_62 . repeat_region 426 488 . ? . description=trf scaffold_62 . repeat_region 426 494 . + . description=(AGCTG)n scaffold_62 . repeat_region 659 690 . ? . description=trf scaffold_62 . repeat_region 662 690 . ? . description=trf scaffold_62 . repeat_region 662 760 . ? . description=dust scaffold_62 . repeat_region 793 3400 . ? . description=dust scaffold_62 . repeat_region 5029 6931 . ? . description=dust scaffold_62 . repeat_region 7084 7156 . ? . description=dust scaffold_62 . repeat_region 7085 7111 . ? . description=trf scaffold_62 . repeat_region 7109 7156 . ? . description=trf scaffold_62 . repeat_region 7109 7162 . + . description=(AGCTG)n scaffold_62 ensembl pseudogene 4253 4803 . + . ID=Phyra51719;biotype=pseudogene;external_name=gwEuk.62.48.1;logic_name=jgi_phyra1 scaffold_62 ensembl pseudogene 4253 4803 . + . ID=Phyra51719;Parent=Phyra51719;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_62 . exon 4253 4803 . + . ID=Phyra51719.1;Parent=Phyra51719;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 3432 4064 . + . ID=Phyra71938;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_62000001;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 3432 4064 . + . ID=Phyra71938;Parent=Phyra71938;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 3432 4064 . + 0 ID=Phyra71938;Parent=Phyra71938;rank=1 scaffold_62 . exon 3432 4064 . + . ID=Phyra71938.1;Parent=Phyra71938;constitutive=1;rank=1 scaffold_62 . biological_region 16736 16740 0.999 - . logic_name=eponine scaffold_62 . biological_region 16774 16783 0.999 - . logic_name=eponine scaffold_62 ensembl protein_coding_gene 11062 14914 . + . ID=Phyra81621;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000003;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 11062 14914 . + . ID=Phyra81621;Parent=Phyra81621;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 11062 11292 . + 0 ID=Phyra81621;Parent=Phyra81621;rank=1 scaffold_62 . exon 11062 11292 . + . ID=Phyra81621.1;Parent=Phyra81621;constitutive=1;rank=1 scaffold_62 . CDS 11387 11443 . + 0 ID=Phyra81621;Parent=Phyra81621;rank=2 scaffold_62 . exon 11387 11443 . + . ID=Phyra81621.2;Parent=Phyra81621;constitutive=1;rank=2 scaffold_62 . CDS 11553 11791 . + 0 ID=Phyra81621;Parent=Phyra81621;rank=3 scaffold_62 . exon 11553 11791 . + . ID=Phyra81621.3;Parent=Phyra81621;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_62 . CDS 11874 11919 . + 0 ID=Phyra81621;Parent=Phyra81621;rank=4 scaffold_62 . exon 11874 11919 . + . ID=Phyra81621.4;Parent=Phyra81621;constitutive=1;ensembl_phase=2;rank=4 scaffold_62 . CDS 11988 12377 . + 0 ID=Phyra81621;Parent=Phyra81621;rank=5 scaffold_62 . exon 11988 12377 . + . ID=Phyra81621.5;Parent=Phyra81621;constitutive=1;rank=5 scaffold_62 . CDS 12441 13033 . + 0 ID=Phyra81621;Parent=Phyra81621;rank=6 scaffold_62 . exon 12441 13033 . + . ID=Phyra81621.6;Parent=Phyra81621;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_62 . CDS 13195 13372 . + 0 ID=Phyra81621;Parent=Phyra81621;rank=7 scaffold_62 . exon 13195 13372 . + . ID=Phyra81621.7;Parent=Phyra81621;constitutive=1;ensembl_phase=2;rank=7 scaffold_62 . CDS 13459 14657 . + 0 ID=Phyra81621;Parent=Phyra81621;rank=8 scaffold_62 . exon 13459 14657 . + . ID=Phyra81621.8;Parent=Phyra81621;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_62 . CDS 14887 14914 . + 0 ID=Phyra81621;Parent=Phyra81621;rank=9 scaffold_62 . exon 14887 14914 . + . ID=Phyra81621.9;Parent=Phyra81621;constitutive=1;ensembl_phase=2;rank=9 scaffold_62 ensembl protein_coding_gene 15294 16850 . - . ID=Phyra81622;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000004;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 15294 16850 . - . ID=Phyra81622;Parent=Phyra81622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 15294 16850 . - 0 ID=Phyra81622;Parent=Phyra81622;rank=1 scaffold_62 . exon 15294 16850 . - . ID=Phyra81622.1;Parent=Phyra81622;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 17783 22792 . + . ID=Phyra96071;biotype=protein_coding;external_name=C_scaffold_62000001;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 17783 22792 . + . ID=Phyra96071;Parent=Phyra96071;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 17783 18130 . + 0 ID=Phyra96071;Parent=Phyra96071;rank=1 scaffold_62 . exon 17783 18130 . + . ID=Phyra96071.1;Parent=Phyra96071;constitutive=1;rank=1 scaffold_62 . CDS 18209 18388 . + 0 ID=Phyra96071;Parent=Phyra96071;rank=2 scaffold_62 . exon 18209 18388 . + . ID=Phyra96071.2;Parent=Phyra96071;constitutive=1;rank=2 scaffold_62 . CDS 18455 19093 . + 0 ID=Phyra96071;Parent=Phyra96071;rank=3 scaffold_62 . exon 18455 19093 . + . ID=Phyra96071.3;Parent=Phyra96071;constitutive=1;rank=3 scaffold_62 . CDS 19267 19494 . + 0 ID=Phyra96071;Parent=Phyra96071;rank=4 scaffold_62 . exon 19267 19494 . + . ID=Phyra96071.4;Parent=Phyra96071;constitutive=1;rank=4 scaffold_62 . CDS 19572 19724 . + 0 ID=Phyra96071;Parent=Phyra96071;rank=5 scaffold_62 . exon 19572 19724 . + . ID=Phyra96071.5;Parent=Phyra96071;constitutive=1;rank=5 scaffold_62 . CDS 19812 20414 . + 0 ID=Phyra96071;Parent=Phyra96071;rank=6 scaffold_62 . CDS 20454 20931 . + 0 ID=Phyra96071;Parent=Phyra96071;rank=7 scaffold_62 . CDS 21936 22673 . + 0 ID=Phyra96071;Parent=Phyra96071;rank=8 scaffold_62 . CDS 22716 22792 . + 0 ID=Phyra96071;Parent=Phyra96071;rank=9 scaffold_62 ensembl protein_coding_gene 22999 24475 . - . ID=Phyra81626;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000008;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 22999 24475 . - . ID=Phyra81626;Parent=Phyra81626;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 22999 23202 . - 0 ID=Phyra81626;Parent=Phyra81626;rank=6 scaffold_62 . exon 22999 23202 . - . ID=Phyra81626.6;Parent=Phyra81626;constitutive=1;rank=6 scaffold_62 . CDS 23267 23359 . - 0 ID=Phyra81626;Parent=Phyra81626;rank=5 scaffold_62 . exon 23267 23359 . - . ID=Phyra81626.5;Parent=Phyra81626;constitutive=1;rank=5 scaffold_62 . CDS 23430 23508 . - 0 ID=Phyra81626;Parent=Phyra81626;rank=4 scaffold_62 . exon 23430 23508 . - . ID=Phyra81626.4;Parent=Phyra81626;constitutive=1;ensembl_phase=2;rank=4 scaffold_62 . CDS 23576 23927 . - 0 ID=Phyra81626;Parent=Phyra81626;rank=3 scaffold_62 . exon 23576 23927 . - . ID=Phyra81626.3;Parent=Phyra81626;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_62 . CDS 24002 24223 . - 0 ID=Phyra81626;Parent=Phyra81626;rank=2 scaffold_62 . exon 24002 24223 . - . ID=Phyra81626.2;Parent=Phyra81626;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 24322 24475 . - 0 ID=Phyra81626;Parent=Phyra81626;rank=1 scaffold_62 . exon 24322 24475 . - . ID=Phyra81626.1;Parent=Phyra81626;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 ensembl protein_coding_gene 24756 25391 . + . ID=Phyra81627;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000009;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 24756 25391 . + . ID=Phyra81627;Parent=Phyra81627;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 24756 25391 . + 0 ID=Phyra81627;Parent=Phyra81627;rank=1 scaffold_62 . exon 24756 25391 . + . ID=Phyra81627.1;Parent=Phyra81627;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 26242 27384 . - . ID=Phyra81628;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000010;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 26242 27384 . - . ID=Phyra81628;Parent=Phyra81628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 26242 27384 . - 0 ID=Phyra81628;Parent=Phyra81628;rank=1 scaffold_62 . exon 26242 27384 . - . ID=Phyra81628.1;Parent=Phyra81628;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 27576 28287 . + . ID=Phyra81629;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000011;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 27576 28287 . + . ID=Phyra81629;Parent=Phyra81629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 27576 28190 . + 0 ID=Phyra81629;Parent=Phyra81629;rank=1 scaffold_62 . exon 27576 28190 . + . ID=Phyra81629.1;Parent=Phyra81629;constitutive=1;rank=1 scaffold_62 . CDS 28252 28287 . + 0 ID=Phyra81629;Parent=Phyra81629;rank=2 scaffold_62 . exon 28252 28287 . + . ID=Phyra81629.2;Parent=Phyra81629;constitutive=1;rank=2 scaffold_62 . exon 19812 20414 . + . ID=Phyra96071.6;Parent=Phyra96071;constitutive=1;rank=6 scaffold_62 . exon 20454 20931 . + . ID=Phyra96071.7;Parent=Phyra96071;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_62 . exon 21936 22673 . + . ID=Phyra96071.8;Parent=Phyra96071;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_62 . exon 22716 22792 . + . ID=Phyra96071.9;Parent=Phyra96071;constitutive=1;ensembl_phase=1;rank=9 scaffold_62 . biological_region 33700 33704 0.999 + . logic_name=eponine scaffold_62 . biological_region 35196 35198 0.999 - . logic_name=eponine scaffold_62 . biological_region 37032 37035 0.999 - . logic_name=eponine scaffold_62 . biological_region 37360 37362 0.999 + . logic_name=eponine scaffold_62 . biological_region 37388 37392 0.999 - . logic_name=eponine scaffold_62 . repeat_region 37911 37929 . ? . description=dust scaffold_62 ensembl protein_coding_gene 31855 33779 . - . ID=Phyra81630;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000012;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 31855 33779 . - . ID=Phyra81630;Parent=Phyra81630;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 31855 32646 . - 0 ID=Phyra81630;Parent=Phyra81630;rank=4 scaffold_62 . exon 31855 32646 . - . ID=Phyra81630.4;Parent=Phyra81630;constitutive=1;rank=4 scaffold_62 . CDS 32753 32869 . - 0 ID=Phyra81630;Parent=Phyra81630;rank=3 scaffold_62 . exon 32753 32869 . - . ID=Phyra81630.3;Parent=Phyra81630;constitutive=1;rank=3 scaffold_62 . CDS 33057 33114 . - 0 ID=Phyra81630;Parent=Phyra81630;rank=2 scaffold_62 . exon 33057 33114 . - . ID=Phyra81630.2;Parent=Phyra81630;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 . CDS 33205 33779 . - 0 ID=Phyra81630;Parent=Phyra81630;rank=1 scaffold_62 . exon 33205 33779 . - . ID=Phyra81630.1;Parent=Phyra81630;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 33905 36156 . + . ID=Phyra81631;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000013;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 33905 36156 . + . ID=Phyra81631;Parent=Phyra81631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 33905 34065 . + 0 ID=Phyra81631;Parent=Phyra81631;rank=1 scaffold_62 . exon 33905 34065 . + . ID=Phyra81631.1;Parent=Phyra81631;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 . CDS 34137 34202 . + 0 ID=Phyra81631;Parent=Phyra81631;rank=2 scaffold_62 . exon 34137 34202 . + . ID=Phyra81631.2;Parent=Phyra81631;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_62 . CDS 34270 34350 . + 0 ID=Phyra81631;Parent=Phyra81631;rank=3 scaffold_62 . exon 34270 34350 . + . ID=Phyra81631.3;Parent=Phyra81631;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_62 . CDS 34409 34477 . + 0 ID=Phyra81631;Parent=Phyra81631;rank=4 scaffold_62 . exon 34409 34477 . + . ID=Phyra81631.4;Parent=Phyra81631;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_62 . CDS 34549 34608 . + 0 ID=Phyra81631;Parent=Phyra81631;rank=5 scaffold_62 . exon 34549 34608 . + . ID=Phyra81631.5;Parent=Phyra81631;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_62 . CDS 34689 36156 . + 0 ID=Phyra81631;Parent=Phyra81631;rank=6 scaffold_62 . exon 34689 36156 . + . ID=Phyra81631.6;Parent=Phyra81631;constitutive=1;ensembl_phase=2;rank=6 scaffold_62 ensembl protein_coding_gene 36228 37754 . - . ID=Phyra81632;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000014;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 36228 37754 . - . ID=Phyra81632;Parent=Phyra81632;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 36228 37754 . - 0 ID=Phyra81632;Parent=Phyra81632;rank=1 scaffold_62 . exon 36228 37754 . - . ID=Phyra81632.1;Parent=Phyra81632;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 38824 40494 . + . ID=Phyra81633;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000015;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 38824 40494 . + . ID=Phyra81633;Parent=Phyra81633;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 38824 40494 . + 0 ID=Phyra81633;Parent=Phyra81633;rank=1 scaffold_62 . exon 38824 40494 . + . ID=Phyra81633.1;Parent=Phyra81633;constitutive=1;rank=1 scaffold_62 . repeat_region 41380 41415 . ? . description=trf scaffold_62 . repeat_region 43590 43618 . ? . description=trf scaffold_62 . repeat_region 48600 49059 . ? . description=trf scaffold_62 ensembl protein_coding_gene 40786 41475 . - . ID=Phyra51731;biotype=protein_coding;external_name=gwEuk.62.60.1;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 40786 41475 . - . ID=Phyra51731;Parent=Phyra51731;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 40786 41475 . - 0 ID=Phyra51731;Parent=Phyra51731;rank=1 scaffold_62 . exon 40786 41475 . - . ID=Phyra51731.1;Parent=Phyra51731;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 44604 46178 . - . ID=Phyra81635;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000017;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 44604 46178 . - . ID=Phyra81635;Parent=Phyra81635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 44604 46178 . - 0 ID=Phyra81635;Parent=Phyra81635;rank=1 scaffold_62 . exon 44604 46178 . - . ID=Phyra81635.1;Parent=Phyra81635;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 48326 49090 . + . ID=Phyra81636;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000018;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 48326 49090 . + . ID=Phyra81636;Parent=Phyra81636;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 48326 49090 . + 0 ID=Phyra81636;Parent=Phyra81636;rank=1 scaffold_62 . exon 48326 49090 . + . ID=Phyra81636.1;Parent=Phyra81636;constitutive=1;rank=1 scaffold_62 . repeat_region 57734 57745 . ? . description=dust scaffold_62 . biological_region 58914 58914 0.999 + . logic_name=eponine scaffold_62 ensembl protein_coding_gene 62625 64100 . - . ID=Phyra51732;biotype=protein_coding;external_name=gwEuk.62.61.1;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 62625 64100 . - . ID=Phyra51732;Parent=Phyra51732;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 62625 64100 . - 0 ID=Phyra51732;Parent=Phyra51732;rank=1 scaffold_62 . exon 62625 64100 . - . ID=Phyra51732.1;Parent=Phyra51732;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 59173 60564 . - . ID=Phyra81637;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000019;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 59173 60564 . - . ID=Phyra81637;Parent=Phyra81637;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 59173 59711 . - 0 ID=Phyra81637;Parent=Phyra81637;rank=3 scaffold_62 . exon 59173 59711 . - . ID=Phyra81637.3;Parent=Phyra81637;constitutive=1;ensembl_phase=1;rank=3 scaffold_62 . CDS 59760 60128 . - 0 ID=Phyra81637;Parent=Phyra81637;rank=2 scaffold_62 . exon 59760 60128 . - . ID=Phyra81637.2;Parent=Phyra81637;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 60315 60564 . - 0 ID=Phyra81637;Parent=Phyra81637;rank=1 scaffold_62 . exon 60315 60564 . - . ID=Phyra81637.1;Parent=Phyra81637;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 ensembl protein_coding_gene 67598 69223 . - . ID=Phyra81639;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000021;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 67598 69223 . - . ID=Phyra81639;Parent=Phyra81639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 67598 69223 . - 0 ID=Phyra81639;Parent=Phyra81639;rank=1 scaffold_62 . exon 67598 69223 . - . ID=Phyra81639.1;Parent=Phyra81639;constitutive=1;rank=1 scaffold_62 . biological_region 73672 73674 0.999 - . logic_name=eponine scaffold_62 . biological_region 77838 77842 0.999 + . logic_name=eponine scaffold_62 ensembl protein_coding_gene 76350 77963 . - . ID=Phyra51749;biotype=protein_coding;external_name=gwEuk.62.78.1;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 76350 77963 . - . ID=Phyra51749;Parent=Phyra51749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 76350 77963 . - 0 ID=Phyra51749;Parent=Phyra51749;rank=1 scaffold_62 . exon 76350 77963 . - . ID=Phyra51749.1;Parent=Phyra51749;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 70075 71700 . - . ID=Phyra81640;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000022;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 70075 71700 . - . ID=Phyra81640;Parent=Phyra81640;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 70075 71700 . - 0 ID=Phyra81640;Parent=Phyra81640;rank=1 scaffold_62 . exon 70075 71700 . - . ID=Phyra81640.1;Parent=Phyra81640;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 72375 73211 . - . ID=Phyra81641;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000023;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 72375 73211 . - . ID=Phyra81641;Parent=Phyra81641;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 72375 73211 . - 0 ID=Phyra81641;Parent=Phyra81641;rank=1 scaffold_62 . exon 72375 73211 . - . ID=Phyra81641.1;Parent=Phyra81641;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 74078 75850 . - . ID=Phyra81642;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000024;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 74078 75850 . - . ID=Phyra81642;Parent=Phyra81642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 74078 75850 . - 0 ID=Phyra81642;Parent=Phyra81642;rank=1 scaffold_62 . exon 74078 75850 . - . ID=Phyra81642.1;Parent=Phyra81642;constitutive=1;rank=1 scaffold_62 . repeat_region 81327 81634 . + . description=GypsyPi-1c_LTR scaffold_62 . repeat_region 81633 81653 . ? . description=trf scaffold_62 . repeat_region 81633 81653 . ? . description=dust scaffold_62 . repeat_region 81692 81699 . ? . description=dust scaffold_62 . repeat_region 85591 85598 . ? . description=dust scaffold_62 . repeat_region 85949 85957 . ? . description=dust scaffold_62 . repeat_region 87742 87749 . ? . description=dust scaffold_62 . repeat_region 87827 87834 . ? . description=dust scaffold_62 ensembl protein_coding_gene 79098 79574 . + . ID=Phyra81644;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000026;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 79098 79574 . + . ID=Phyra81644;Parent=Phyra81644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 79098 79574 . + 0 ID=Phyra81644;Parent=Phyra81644;rank=1 scaffold_62 . exon 79098 79574 . + . ID=Phyra81644.1;Parent=Phyra81644;constitutive=1;rank=1 scaffold_62 . biological_region 89263 89266 0.999 - . logic_name=eponine scaffold_62 . biological_region 90798 90802 0.999 + . logic_name=eponine scaffold_62 . biological_region 92279 92282 0.999 - . logic_name=eponine scaffold_62 . biological_region 94597 94601 0.999 + . logic_name=eponine scaffold_62 ensembl protein_coding_gene 93109 94722 . - . ID=Phyra51757;biotype=protein_coding;external_name=gwEuk.62.86.1;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 93109 94722 . - . ID=Phyra51757;Parent=Phyra51757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 93109 94722 . - 0 ID=Phyra51757;Parent=Phyra51757;rank=1 scaffold_62 . exon 93109 94722 . - . ID=Phyra51757.1;Parent=Phyra51757;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 90481 91257 . + . ID=Phyra81645;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000027;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 90481 91257 . + . ID=Phyra81645;Parent=Phyra81645;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 90481 91257 . + 0 ID=Phyra81645;Parent=Phyra81645;rank=1 scaffold_62 . exon 90481 91257 . + . ID=Phyra81645.1;Parent=Phyra81645;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 97482 98648 . - . ID=Phyra81647;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000029;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 97482 98648 . - . ID=Phyra81647;Parent=Phyra81647;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 97482 98318 . - 0 ID=Phyra81647;Parent=Phyra81647;rank=3 scaffold_62 . exon 97482 98318 . - . ID=Phyra81647.3;Parent=Phyra81647;constitutive=1;rank=3 scaffold_62 . CDS 98383 98464 . - 0 ID=Phyra81647;Parent=Phyra81647;rank=2 scaffold_62 . CDS 98524 98648 . - 0 ID=Phyra81647;Parent=Phyra81647;rank=1 scaffold_62 . repeat_region 103437 103456 . ? . description=trf scaffold_62 ensembl protein_coding_gene 107782 108960 . + . ID=Phyra71941;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_62000004;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 107782 108960 . + . ID=Phyra71941;Parent=Phyra71941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 107782 108960 . + 0 ID=Phyra71941;Parent=Phyra71941;rank=1 scaffold_62 . exon 107782 108960 . + . ID=Phyra71941.1;Parent=Phyra71941;constitutive=1;rank=1 scaffold_62 . exon 98383 98464 . - . ID=Phyra81647.2;Parent=Phyra81647;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 . exon 98524 98648 . - . ID=Phyra81647.1;Parent=Phyra81647;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 98880 102003 . + . ID=Phyra81648;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000030;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 98880 102003 . + . ID=Phyra81648;Parent=Phyra81648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 98880 98993 . + 0 ID=Phyra81648;Parent=Phyra81648;rank=1 scaffold_62 . exon 98880 98993 . + . ID=Phyra81648.1;Parent=Phyra81648;constitutive=1;rank=1 scaffold_62 . CDS 99071 99098 . + 0 ID=Phyra81648;Parent=Phyra81648;rank=2 scaffold_62 . exon 99071 99098 . + . ID=Phyra81648.2;Parent=Phyra81648;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_62 . CDS 99179 99214 . + 0 ID=Phyra81648;Parent=Phyra81648;rank=3 scaffold_62 . exon 99179 99214 . + . ID=Phyra81648.3;Parent=Phyra81648;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_62 . CDS 99296 99351 . + 0 ID=Phyra81648;Parent=Phyra81648;rank=4 scaffold_62 . exon 99296 99351 . + . ID=Phyra81648.4;Parent=Phyra81648;constitutive=1;ensembl_phase=1;rank=4 scaffold_62 . CDS 99593 99778 . + 0 ID=Phyra81648;Parent=Phyra81648;rank=5 scaffold_62 . exon 99593 99778 . + . ID=Phyra81648.5;Parent=Phyra81648;constitutive=1;rank=5 scaffold_62 . CDS 99909 99980 . + 0 ID=Phyra81648;Parent=Phyra81648;rank=6 scaffold_62 . exon 99909 99980 . + . ID=Phyra81648.6;Parent=Phyra81648;constitutive=1;rank=6 scaffold_62 . CDS 100040 100225 . + 0 ID=Phyra81648;Parent=Phyra81648;rank=7 scaffold_62 . exon 100040 100225 . + . ID=Phyra81648.7;Parent=Phyra81648;constitutive=1;rank=7 scaffold_62 . CDS 100464 100577 . + 0 ID=Phyra81648;Parent=Phyra81648;rank=8 scaffold_62 . exon 100464 100577 . + . ID=Phyra81648.8;Parent=Phyra81648;constitutive=1;rank=8 scaffold_62 . CDS 100646 100921 . + 0 ID=Phyra81648;Parent=Phyra81648;rank=9 scaffold_62 . exon 100646 100921 . + . ID=Phyra81648.9;Parent=Phyra81648;constitutive=1;rank=9 scaffold_62 . CDS 100997 101110 . + 0 ID=Phyra81648;Parent=Phyra81648;rank=10 scaffold_62 . exon 100997 101110 . + . ID=Phyra81648.10;Parent=Phyra81648;constitutive=1;rank=10 scaffold_62 . CDS 101187 101650 . + 0 ID=Phyra81648;Parent=Phyra81648;rank=11 scaffold_62 . exon 101187 101650 . + . ID=Phyra81648.11;Parent=Phyra81648;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_62 . CDS 101727 102003 . + 0 ID=Phyra81648;Parent=Phyra81648;rank=12 scaffold_62 . exon 101727 102003 . + . ID=Phyra81648.12;Parent=Phyra81648;constitutive=1;ensembl_phase=2;rank=12 scaffold_62 ensembl protein_coding_gene 102163 103130 . + . ID=Phyra81649;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000031;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 102163 103130 . + . ID=Phyra81649;Parent=Phyra81649;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 102163 102408 . + 0 ID=Phyra81649;Parent=Phyra81649;rank=1 scaffold_62 . exon 102163 102408 . + . ID=Phyra81649.1;Parent=Phyra81649;constitutive=1;rank=1 scaffold_62 . CDS 102482 102541 . + 0 ID=Phyra81649;Parent=Phyra81649;rank=2 scaffold_62 . exon 102482 102541 . + . ID=Phyra81649.2;Parent=Phyra81649;constitutive=1;rank=2 scaffold_62 . CDS 102626 102955 . + 0 ID=Phyra81649;Parent=Phyra81649;rank=3 scaffold_62 . exon 102626 102955 . + . ID=Phyra81649.3;Parent=Phyra81649;constitutive=1;rank=3 scaffold_62 . CDS 103023 103130 . + 0 ID=Phyra81649;Parent=Phyra81649;rank=4 scaffold_62 . exon 103023 103130 . + . ID=Phyra81649.4;Parent=Phyra81649;constitutive=1;rank=4 scaffold_62 ensembl protein_coding_gene 105167 106489 . - . ID=Phyra81651;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000033;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 105167 106489 . - . ID=Phyra81651;Parent=Phyra81651;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 105167 105756 . - 0 ID=Phyra81651;Parent=Phyra81651;rank=3 scaffold_62 . exon 105167 105756 . - . ID=Phyra81651.3;Parent=Phyra81651;constitutive=1;ensembl_phase=1;rank=3 scaffold_62 . CDS 105843 105964 . - 0 ID=Phyra81651;Parent=Phyra81651;rank=2 scaffold_62 . exon 105843 105964 . - . ID=Phyra81651.2;Parent=Phyra81651;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_62 . CDS 106029 106489 . - 0 ID=Phyra81651;Parent=Phyra81651;rank=1 scaffold_62 . exon 106029 106489 . - . ID=Phyra81651.1;Parent=Phyra81651;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 103505 105090 . + . ID=Phyra96072;biotype=protein_coding;external_name=C_scaffold_62000002;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 103505 105090 . + . ID=Phyra96072;Parent=Phyra96072;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 103505 103738 . + 0 ID=Phyra96072;Parent=Phyra96072;rank=1 scaffold_62 . exon 103505 103738 . + . ID=Phyra96072.1;Parent=Phyra96072;constitutive=1;rank=1 scaffold_62 . CDS 103806 104146 . + 0 ID=Phyra96072;Parent=Phyra96072;rank=2 scaffold_62 . exon 103806 104146 . + . ID=Phyra96072.2;Parent=Phyra96072;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_62 . CDS 104333 104438 . + 0 ID=Phyra96072;Parent=Phyra96072;rank=3 scaffold_62 . exon 104333 104438 . + . ID=Phyra96072.3;Parent=Phyra96072;constitutive=1;ensembl_phase=2;rank=3 scaffold_62 . CDS 104811 105016 . + 0 ID=Phyra96072;Parent=Phyra96072;rank=4 scaffold_62 . exon 104811 105016 . + . ID=Phyra96072.4;Parent=Phyra96072;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_62 . CDS 105057 105090 . + 0 ID=Phyra96072;Parent=Phyra96072;rank=5 scaffold_62 . exon 105057 105090 . + . ID=Phyra96072.5;Parent=Phyra96072;constitutive=1;ensembl_phase=2;rank=5 scaffold_62 . biological_region 112405 112407 0.999 - . logic_name=eponine scaffold_62 . biological_region 117807 117812 0.999 + . logic_name=eponine scaffold_62 ensembl protein_coding_gene 111096 112670 . - . ID=Phyra81653;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000035;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 111096 112670 . - . ID=Phyra81653;Parent=Phyra81653;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 111096 112670 . - 0 ID=Phyra81653;Parent=Phyra81653;rank=1 scaffold_62 . exon 111096 112670 . - . ID=Phyra81653.1;Parent=Phyra81653;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 112827 115541 . - . ID=Phyra81654;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000036;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 112827 115541 . - . ID=Phyra81654;Parent=Phyra81654;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 112827 115541 . - 0 ID=Phyra81654;Parent=Phyra81654;rank=1 scaffold_62 . exon 112827 115541 . - . ID=Phyra81654.1;Parent=Phyra81654;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 115928 119059 . - . ID=Phyra81655;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000037;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 115928 119059 . - . ID=Phyra81655;Parent=Phyra81655;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 115928 119059 . - 0 ID=Phyra81655;Parent=Phyra81655;rank=1 scaffold_62 . exon 115928 119059 . - . ID=Phyra81655.1;Parent=Phyra81655;constitutive=1;rank=1 scaffold_62 . repeat_region 127049 127094 . ? . description=trf scaffold_62 ensembl protein_coding_gene 120148 123654 . + . ID=Phyra81656;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000038;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 120148 123654 . + . ID=Phyra81656;Parent=Phyra81656;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 120148 123654 . + 0 ID=Phyra81656;Parent=Phyra81656;rank=1 scaffold_62 . exon 120148 123654 . + . ID=Phyra81656.1;Parent=Phyra81656;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 123855 124865 . - . ID=Phyra81657;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000039;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 123855 124865 . - . ID=Phyra81657;Parent=Phyra81657;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 123855 124865 . - 0 ID=Phyra81657;Parent=Phyra81657;rank=1 scaffold_62 . exon 123855 124865 . - . ID=Phyra81657.1;Parent=Phyra81657;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 125055 126129 . - . ID=Phyra81658;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000040;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 125055 126129 . - . ID=Phyra81658;Parent=Phyra81658;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 125055 125855 . - 0 ID=Phyra81658;Parent=Phyra81658;rank=2 scaffold_62 . exon 125055 125855 . - . ID=Phyra81658.2;Parent=Phyra81658;constitutive=1;rank=2 scaffold_62 . CDS 125923 126129 . - 0 ID=Phyra81658;Parent=Phyra81658;rank=1 scaffold_62 . exon 125923 126129 . - . ID=Phyra81658.1;Parent=Phyra81658;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 126689 128092 . + . ID=Phyra81659;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000041;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 126689 128092 . + . ID=Phyra81659;Parent=Phyra81659;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 126689 128092 . + 0 ID=Phyra81659;Parent=Phyra81659;rank=1 scaffold_62 . exon 126689 128092 . + . ID=Phyra81659.1;Parent=Phyra81659;constitutive=1;rank=1 scaffold_62 . biological_region 127928 127930 0.999 + . logic_name=eponine scaffold_62 . biological_region 127961 127967 0.999 + . logic_name=eponine scaffold_62 . repeat_region 128342 128349 . ? . description=dust scaffold_62 . biological_region 131102 131103 0.999 - . logic_name=eponine scaffold_62 . biological_region 131489 131494 0.999 - . logic_name=eponine scaffold_62 . biological_region 136966 136968 0.999 + . logic_name=eponine scaffold_62 ensembl protein_coding_gene 129619 131160 . + . ID=Phyra51775;biotype=protein_coding;external_name=gwEuk.62.104.1;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 129619 131160 . + . ID=Phyra51775;Parent=Phyra51775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 129619 130429 . + 0 ID=Phyra51775;Parent=Phyra51775;rank=1 scaffold_62 . exon 129619 130429 . + . ID=Phyra51775.1;Parent=Phyra51775;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 130625 131160 . + 0 ID=Phyra51775;Parent=Phyra51775;rank=2 scaffold_62 . exon 130625 131160 . + . ID=Phyra51775.2;Parent=Phyra51775;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 ensembl protein_coding_gene 128485 129060 . - . ID=Phyra81660;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000042;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 128485 129060 . - . ID=Phyra81660;Parent=Phyra81660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 128485 129060 . - 0 ID=Phyra81660;Parent=Phyra81660;rank=1 scaffold_62 . exon 128485 129060 . - . ID=Phyra81660.1;Parent=Phyra81660;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 131422 135303 . + . ID=Phyra81662;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000044;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 131422 135303 . + . ID=Phyra81662;Parent=Phyra81662;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 131422 135303 . + 0 ID=Phyra81662;Parent=Phyra81662;rank=1 scaffold_62 . exon 131422 135303 . + . ID=Phyra81662.1;Parent=Phyra81662;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 135878 137011 . - . ID=Phyra81663;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000045;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 135878 137011 . - . ID=Phyra81663;Parent=Phyra81663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 135878 136084 . - 0 ID=Phyra81663;Parent=Phyra81663;rank=3 scaffold_62 . exon 135878 136084 . - . ID=Phyra81663.3;Parent=Phyra81663;constitutive=1;rank=3 scaffold_62 . CDS 136157 136783 . - 0 ID=Phyra81663;Parent=Phyra81663;rank=2 scaffold_62 . exon 136157 136783 . - . ID=Phyra81663.2;Parent=Phyra81663;constitutive=1;rank=2 scaffold_62 . CDS 136862 137011 . - 0 ID=Phyra81663;Parent=Phyra81663;rank=1 scaffold_62 . exon 136862 137011 . - . ID=Phyra81663.1;Parent=Phyra81663;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 140258 141343 . - . ID=Phyra71942;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_62000005;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 140258 141343 . - . ID=Phyra71942;Parent=Phyra71942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 140258 141343 . - 0 ID=Phyra71942;Parent=Phyra71942;rank=1 scaffold_62 . exon 140258 141343 . - . ID=Phyra71942.1;Parent=Phyra71942;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 138769 140036 . + . ID=Phyra81664;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000046;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 138769 140036 . + . ID=Phyra81664;Parent=Phyra81664;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 138769 139386 . + 0 ID=Phyra81664;Parent=Phyra81664;rank=1 scaffold_62 . exon 138769 139386 . + . ID=Phyra81664.1;Parent=Phyra81664;constitutive=1;rank=1 scaffold_62 . CDS 139410 140036 . + 0 ID=Phyra81664;Parent=Phyra81664;rank=2 scaffold_62 . exon 139410 140036 . + . ID=Phyra81664.2;Parent=Phyra81664;constitutive=1;rank=2 scaffold_62 ensembl protein_coding_gene 143173 145653 . + . ID=Phyra81666;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000048;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 143173 145653 . + . ID=Phyra81666;Parent=Phyra81666;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 143173 143315 . + 0 ID=Phyra81666;Parent=Phyra81666;rank=1 scaffold_62 . exon 143173 143315 . + . ID=Phyra81666.1;Parent=Phyra81666;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 . CDS 143363 143448 . + 0 ID=Phyra81666;Parent=Phyra81666;rank=2 scaffold_62 . exon 143363 143448 . + . ID=Phyra81666.2;Parent=Phyra81666;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_62 . CDS 143582 143955 . + 0 ID=Phyra81666;Parent=Phyra81666;rank=3 scaffold_62 . exon 143582 143955 . + . ID=Phyra81666.3;Parent=Phyra81666;constitutive=1;ensembl_phase=1;rank=3 scaffold_62 . CDS 144057 144167 . + 0 ID=Phyra81666;Parent=Phyra81666;rank=4 scaffold_62 . exon 144057 144167 . + . ID=Phyra81666.4;Parent=Phyra81666;constitutive=1;rank=4 scaffold_62 . CDS 144240 144529 . + 0 ID=Phyra81666;Parent=Phyra81666;rank=5 scaffold_62 . exon 144240 144529 . + . ID=Phyra81666.5;Parent=Phyra81666;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_62 . CDS 144784 145028 . + 0 ID=Phyra81666;Parent=Phyra81666;rank=6 scaffold_62 . exon 144784 145028 . + . ID=Phyra81666.6;Parent=Phyra81666;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_62 . CDS 145109 145653 . + 0 ID=Phyra81666;Parent=Phyra81666;rank=7 scaffold_62 . exon 145109 145653 . + . ID=Phyra81666.7;Parent=Phyra81666;constitutive=1;ensembl_phase=1;rank=7 scaffold_62 ensembl protein_coding_gene 145953 146947 . - . ID=Phyra96076;biotype=protein_coding;external_name=C_scaffold_62000006;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 145953 146947 . - . ID=Phyra96076;Parent=Phyra96076;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 145953 146135 . - 0 ID=Phyra96076;Parent=Phyra96076;rank=4 scaffold_62 . exon 145953 146135 . - . ID=Phyra96076.4;Parent=Phyra96076;constitutive=1;rank=4 scaffold_62 . CDS 146208 146304 . - 0 ID=Phyra96076;Parent=Phyra96076;rank=3 scaffold_62 . exon 146208 146304 . - . ID=Phyra96076.3;Parent=Phyra96076;constitutive=1;ensembl_phase=2;rank=3 scaffold_62 . CDS 146390 146512 . - 0 ID=Phyra96076;Parent=Phyra96076;rank=2 scaffold_62 . exon 146390 146512 . - . ID=Phyra96076.2;Parent=Phyra96076;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_62 . CDS 146583 146947 . - 0 ID=Phyra96076;Parent=Phyra96076;rank=1 scaffold_62 . exon 146583 146947 . - . ID=Phyra96076.1;Parent=Phyra96076;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 147227 148440 . + . ID=Phyra96077;biotype=protein_coding;external_name=C_scaffold_62000007;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 147227 148440 . + . ID=Phyra96077;Parent=Phyra96077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 147227 147289 . + 0 ID=Phyra96077;Parent=Phyra96077;rank=1 scaffold_62 . exon 147227 147289 . + . ID=Phyra96077.1;Parent=Phyra96077;constitutive=1;rank=1 scaffold_62 . CDS 147365 147371 . + 0 ID=Phyra96077;Parent=Phyra96077;rank=2 scaffold_62 . exon 147365 147371 . + . ID=Phyra96077.2;Parent=Phyra96077;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_62 . CDS 147464 147537 . + 0 ID=Phyra96077;Parent=Phyra96077;rank=3 scaffold_62 . CDS 147595 148440 . + 0 ID=Phyra96077;Parent=Phyra96077;rank=4 scaffold_62 . biological_region 147962 147967 0.999 - . logic_name=eponine scaffold_62 . biological_region 148163 148167 0.999 + . logic_name=eponine scaffold_62 . biological_region 148203 148204 0.999 + . logic_name=eponine scaffold_62 . biological_region 148233 148239 0.999 - . logic_name=eponine scaffold_62 . repeat_region 148653 148692 . ? . description=trf scaffold_62 . biological_region 148839 148839 0.999 - . logic_name=eponine scaffold_62 . biological_region 152536 152539 0.999 - . logic_name=eponine scaffold_62 . biological_region 154720 154722 0.999 - . logic_name=eponine scaffold_62 . biological_region 156908 156913 0.999 + . logic_name=eponine scaffold_62 . biological_region 156985 156988 0.999 - . logic_name=eponine scaffold_62 ensembl protein_coding_gene 156620 157216 . - . ID=Phyra51797;biotype=protein_coding;external_name=gwEuk.62.126.1;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 156620 157216 . - . ID=Phyra51797;Parent=Phyra51797;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 156620 157216 . - 0 ID=Phyra51797;Parent=Phyra51797;rank=1 scaffold_62 . exon 156620 157216 . - . ID=Phyra51797.1;Parent=Phyra51797;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 152855 154098 . + . ID=Phyra71944;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_62000007;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 152855 154098 . + . ID=Phyra71944;Parent=Phyra71944;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 152855 152992 . + 0 ID=Phyra71944;Parent=Phyra71944;rank=1 scaffold_62 . exon 152855 152992 . + . ID=Phyra71944.1;Parent=Phyra71944;constitutive=1;rank=1 scaffold_62 . CDS 153055 154098 . + 0 ID=Phyra71944;Parent=Phyra71944;rank=2 scaffold_62 . exon 153055 154098 . + . ID=Phyra71944.2;Parent=Phyra71944;constitutive=1;rank=2 scaffold_62 ensembl protein_coding_gene 149122 150390 . + . ID=Phyra81669;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000051;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 149122 150390 . + . ID=Phyra81669;Parent=Phyra81669;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 149122 150390 . + 0 ID=Phyra81669;Parent=Phyra81669;rank=1 scaffold_62 . exon 149122 150390 . + . ID=Phyra81669.1;Parent=Phyra81669;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 151243 152652 . + . ID=Phyra81670;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000052;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 151243 152652 . + . ID=Phyra81670;Parent=Phyra81670;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 151243 152652 . + 0 ID=Phyra81670;Parent=Phyra81670;rank=1 scaffold_62 . exon 151243 152652 . + . ID=Phyra81670.1;Parent=Phyra81670;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 154216 156475 . - . ID=Phyra81672;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000054;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 154216 156475 . - . ID=Phyra81672;Parent=Phyra81672;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 154216 154266 . - 0 ID=Phyra81672;Parent=Phyra81672;rank=3 scaffold_62 . exon 154216 154266 . - . ID=Phyra81672.3;Parent=Phyra81672;constitutive=1;rank=3 scaffold_62 . CDS 154329 156195 . - 0 ID=Phyra81672;Parent=Phyra81672;rank=2 scaffold_62 . exon 154329 156195 . - . ID=Phyra81672.2;Parent=Phyra81672;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 . CDS 156264 156475 . - 0 ID=Phyra81672;Parent=Phyra81672;rank=1 scaffold_62 . exon 156264 156475 . - . ID=Phyra81672.1;Parent=Phyra81672;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 . exon 147464 147537 . + . ID=Phyra96077.3;Parent=Phyra96077;constitutive=1;ensembl_phase=1;rank=3 scaffold_62 . exon 147595 148440 . + . ID=Phyra96077.4;Parent=Phyra96077;constitutive=1;rank=4 scaffold_62 ensembl protein_coding_gene 157507 159745 . - . ID=Phyra81674;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000056;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 157507 159745 . - . ID=Phyra81674;Parent=Phyra81674;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 157507 158938 . - 0 ID=Phyra81674;Parent=Phyra81674;rank=6 scaffold_62 . exon 157507 158938 . - . ID=Phyra81674.6;Parent=Phyra81674;constitutive=1;ensembl_phase=2;rank=6 scaffold_62 . CDS 159013 159127 . - 0 ID=Phyra81674;Parent=Phyra81674;rank=5 scaffold_62 . exon 159013 159127 . - . ID=Phyra81674.5;Parent=Phyra81674;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_62 . CDS 159213 159286 . - 0 ID=Phyra81674;Parent=Phyra81674;rank=4 scaffold_62 . exon 159213 159286 . - . ID=Phyra81674.4;Parent=Phyra81674;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_62 . CDS 159360 159520 . - 0 ID=Phyra81674;Parent=Phyra81674;rank=3 scaffold_62 . exon 159360 159520 . - . ID=Phyra81674.3;Parent=Phyra81674;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_62 . CDS 159599 159662 . - 0 ID=Phyra81674;Parent=Phyra81674;rank=2 scaffold_62 . exon 159599 159662 . - . ID=Phyra81674.2;Parent=Phyra81674;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 . CDS 159741 159745 . - 0 ID=Phyra81674;Parent=Phyra81674;rank=1 scaffold_62 . exon 159741 159745 . - . ID=Phyra81674.1;Parent=Phyra81674;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 160022 160342 . + . ID=Phyra81675;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000057;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 160022 160342 . + . ID=Phyra81675;Parent=Phyra81675;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 160022 160342 . + 0 ID=Phyra81675;Parent=Phyra81675;rank=1 scaffold_62 . exon 160022 160342 . + . ID=Phyra81675.1;Parent=Phyra81675;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 162694 163281 . + . ID=Phyra81677;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000059;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 162694 163281 . + . ID=Phyra81677;Parent=Phyra81677;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 162694 162907 . + 0 ID=Phyra81677;Parent=Phyra81677;rank=1 scaffold_62 . exon 162694 162907 . + . ID=Phyra81677.1;Parent=Phyra81677;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 162974 163281 . + 0 ID=Phyra81677;Parent=Phyra81677;rank=2 scaffold_62 . exon 162974 163281 . + . ID=Phyra81677.2;Parent=Phyra81677;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 ensembl protein_coding_gene 163894 167172 . - . ID=Phyra81678;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000060;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 163894 167172 . - . ID=Phyra81678;Parent=Phyra81678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 163894 166608 . - 0 ID=Phyra81678;Parent=Phyra81678;rank=3 scaffold_62 . exon 163894 166608 . - . ID=Phyra81678.3;Parent=Phyra81678;constitutive=1;rank=3 scaffold_62 . CDS 166879 167019 . - 0 ID=Phyra81678;Parent=Phyra81678;rank=2 scaffold_62 . exon 166879 167019 . - . ID=Phyra81678.2;Parent=Phyra81678;constitutive=1;rank=2 scaffold_62 . CDS 167101 167172 . - 0 ID=Phyra81678;Parent=Phyra81678;rank=1 scaffold_62 ensembl protein_coding_gene 160608 161507 . - . ID=Phyra96081;biotype=protein_coding;external_name=C_scaffold_62000011;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 160608 161507 . - . ID=Phyra96081;Parent=Phyra96081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 160608 160874 . - 0 ID=Phyra96081;Parent=Phyra96081;rank=3 scaffold_62 . exon 160608 160874 . - . ID=Phyra96081.3;Parent=Phyra96081;constitutive=1;rank=3 scaffold_62 . CDS 160942 161007 . - 0 ID=Phyra96081;Parent=Phyra96081;rank=2 scaffold_62 . exon 160942 161007 . - . ID=Phyra96081.2;Parent=Phyra96081;constitutive=1;rank=2 scaffold_62 . CDS 161370 161507 . - 0 ID=Phyra96081;Parent=Phyra96081;rank=1 scaffold_62 . exon 161370 161507 . - . ID=Phyra96081.1;Parent=Phyra96081;constitutive=1;rank=1 scaffold_62 . biological_region 170223 170227 0.999 - . logic_name=eponine scaffold_62 . biological_region 173462 173465 0.999 + . logic_name=eponine scaffold_62 ensembl protein_coding_gene 170385 170993 . + . ID=Phyra71946;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_62000009;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 170385 170993 . + . ID=Phyra71946;Parent=Phyra71946;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 170385 170583 . + 0 ID=Phyra71946;Parent=Phyra71946;rank=1 scaffold_62 . exon 170385 170583 . + . ID=Phyra71946.1;Parent=Phyra71946;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 170663 170844 . + 0 ID=Phyra71946;Parent=Phyra71946;rank=2 scaffold_62 . exon 170663 170844 . + . ID=Phyra71946.2;Parent=Phyra71946;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 170916 170993 . + 0 ID=Phyra71946;Parent=Phyra71946;rank=3 scaffold_62 . exon 170916 170993 . + . ID=Phyra71946.3;Parent=Phyra71946;constitutive=1;rank=3 scaffold_62 ensembl protein_coding_gene 171446 172246 . + . ID=Phyra71947;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_62000010;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 171446 172246 . + . ID=Phyra71947;Parent=Phyra71947;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 171446 172246 . + 0 ID=Phyra71947;Parent=Phyra71947;rank=1 scaffold_62 . exon 171446 172246 . + . ID=Phyra71947.1;Parent=Phyra71947;constitutive=1;rank=1 scaffold_62 . exon 167101 167172 . - . ID=Phyra81678.1;Parent=Phyra81678;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 167659 168371 . - . ID=Phyra81679;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000061;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 167659 168371 . - . ID=Phyra81679;Parent=Phyra81679;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 167659 167732 . - 0 ID=Phyra81679;Parent=Phyra81679;rank=2 scaffold_62 . exon 167659 167732 . - . ID=Phyra81679.2;Parent=Phyra81679;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 167885 168371 . - 0 ID=Phyra81679;Parent=Phyra81679;rank=1 scaffold_62 . exon 167885 168371 . - . ID=Phyra81679.1;Parent=Phyra81679;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 ensembl protein_coding_gene 168691 169979 . + . ID=Phyra81680;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000062;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 168691 169979 . + . ID=Phyra81680;Parent=Phyra81680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 168691 168766 . + 0 ID=Phyra81680;Parent=Phyra81680;rank=1 scaffold_62 . exon 168691 168766 . + . ID=Phyra81680.1;Parent=Phyra81680;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 168825 169103 . + 0 ID=Phyra81680;Parent=Phyra81680;rank=2 scaffold_62 . exon 168825 169103 . + . ID=Phyra81680.2;Parent=Phyra81680;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 169192 169426 . + 0 ID=Phyra81680;Parent=Phyra81680;rank=3 scaffold_62 . exon 169192 169426 . + . ID=Phyra81680.3;Parent=Phyra81680;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_62 . CDS 169502 169979 . + 0 ID=Phyra81680;Parent=Phyra81680;rank=4 scaffold_62 . exon 169502 169979 . + . ID=Phyra81680.4;Parent=Phyra81680;constitutive=1;ensembl_phase=2;rank=4 scaffold_62 ensembl protein_coding_gene 173785 174682 . + . ID=Phyra81684;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000066;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 173785 174682 . + . ID=Phyra81684;Parent=Phyra81684;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 173785 174438 . + 0 ID=Phyra81684;Parent=Phyra81684;rank=1 scaffold_62 . exon 173785 174438 . + . ID=Phyra81684.1;Parent=Phyra81684;constitutive=1;rank=1 scaffold_62 . CDS 174509 174682 . + 0 ID=Phyra81684;Parent=Phyra81684;rank=2 scaffold_62 . exon 174509 174682 . + . ID=Phyra81684.2;Parent=Phyra81684;constitutive=1;rank=2 scaffold_62 ensembl protein_coding_gene 174873 177661 . - . ID=Phyra81685;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000067;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 174873 177661 . - . ID=Phyra81685;Parent=Phyra81685;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 174873 174934 . - 0 ID=Phyra81685;Parent=Phyra81685;rank=2 scaffold_62 . exon 174873 174934 . - . ID=Phyra81685.2;Parent=Phyra81685;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 174964 177661 . - 0 ID=Phyra81685;Parent=Phyra81685;rank=1 scaffold_62 . exon 174964 177661 . - . ID=Phyra81685.1;Parent=Phyra81685;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 ensembl protein_coding_gene 172656 173523 . - . ID=Phyra96082;biotype=protein_coding;external_name=C_scaffold_62000012;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 172656 173523 . - . ID=Phyra96082;Parent=Phyra96082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 172656 172730 . - 0 ID=Phyra96082;Parent=Phyra96082;rank=3 scaffold_62 . exon 172656 172730 . - . ID=Phyra96082.3;Parent=Phyra96082;constitutive=1;rank=3 scaffold_62 . CDS 172798 172873 . - 0 ID=Phyra96082;Parent=Phyra96082;rank=2 scaffold_62 . exon 172798 172873 . - . ID=Phyra96082.2;Parent=Phyra96082;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 . CDS 172952 173523 . - 0 ID=Phyra96082;Parent=Phyra96082;rank=1 scaffold_62 . exon 172952 173523 . - . ID=Phyra96082.1;Parent=Phyra96082;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 185175 186717 . - . ID=Phyra81688;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000070;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 185175 186717 . - . ID=Phyra81688;Parent=Phyra81688;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 185175 186369 . - 0 ID=Phyra81688;Parent=Phyra81688;rank=2 scaffold_62 . exon 185175 186369 . - . ID=Phyra81688.2;Parent=Phyra81688;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 . CDS 186455 186717 . - 0 ID=Phyra81688;Parent=Phyra81688;rank=1 scaffold_62 . exon 186455 186717 . - . ID=Phyra81688.1;Parent=Phyra81688;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 177909 179954 . - . ID=Phyra96086;biotype=protein_coding;external_name=C_scaffold_62000016;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 177909 179954 . - . ID=Phyra96086;Parent=Phyra96086;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 177909 178394 . - 0 ID=Phyra96086;Parent=Phyra96086;rank=5 scaffold_62 . exon 177909 178394 . - . ID=Phyra96086.5;Parent=Phyra96086;constitutive=1;rank=5 scaffold_62 . CDS 178473 179021 . - 0 ID=Phyra96086;Parent=Phyra96086;rank=4 scaffold_62 . exon 178473 179021 . - . ID=Phyra96086.4;Parent=Phyra96086;constitutive=1;rank=4 scaffold_62 . CDS 179110 179212 . - 0 ID=Phyra96086;Parent=Phyra96086;rank=3 scaffold_62 . exon 179110 179212 . - . ID=Phyra96086.3;Parent=Phyra96086;constitutive=1;ensembl_phase=2;rank=3 scaffold_62 . CDS 179279 179497 . - 0 ID=Phyra96086;Parent=Phyra96086;rank=2 scaffold_62 . exon 179279 179497 . - . ID=Phyra96086.2;Parent=Phyra96086;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_62 . CDS 179566 179954 . - 0 ID=Phyra96086;Parent=Phyra96086;rank=1 scaffold_62 . exon 179566 179954 . - . ID=Phyra96086.1;Parent=Phyra96086;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 180407 185238 . + . ID=Phyra96087;biotype=protein_coding;external_name=C_scaffold_62000017;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 180407 185238 . + . ID=Phyra96087;Parent=Phyra96087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 180407 180965 . + 0 ID=Phyra96087;Parent=Phyra96087;rank=1 scaffold_62 . exon 180407 180965 . + . ID=Phyra96087.1;Parent=Phyra96087;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 181109 182230 . + 0 ID=Phyra96087;Parent=Phyra96087;rank=2 scaffold_62 . exon 181109 182230 . + . ID=Phyra96087.2;Parent=Phyra96087;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 182465 182851 . + 0 ID=Phyra96087;Parent=Phyra96087;rank=3 scaffold_62 . exon 182465 182851 . + . ID=Phyra96087.3;Parent=Phyra96087;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_62 . CDS 183652 183929 . + 0 ID=Phyra96087;Parent=Phyra96087;rank=4 scaffold_62 . exon 183652 183929 . + . ID=Phyra96087.4;Parent=Phyra96087;constitutive=1;ensembl_phase=1;rank=4 scaffold_62 . CDS 183966 184813 . + 0 ID=Phyra96087;Parent=Phyra96087;rank=5 scaffold_62 . exon 183966 184813 . + . ID=Phyra96087.5;Parent=Phyra96087;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_62 . CDS 184901 185154 . + 0 ID=Phyra96087;Parent=Phyra96087;rank=6 scaffold_62 . exon 184901 185154 . + . ID=Phyra96087.6;Parent=Phyra96087;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_62 . CDS 185216 185238 . + 0 ID=Phyra96087;Parent=Phyra96087;rank=7 scaffold_62 . exon 185216 185238 . + . ID=Phyra96087.7;Parent=Phyra96087;constitutive=1;ensembl_phase=1;rank=7 scaffold_62 . repeat_region 194414 194443 . ? . description=trf scaffold_62 . biological_region 194905 194908 0.999 + . logic_name=eponine scaffold_62 . biological_region 194911 194915 0.999 - . logic_name=eponine scaffold_62 ensembl protein_coding_gene 195334 197215 . - . ID=Phyra81694;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000076;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 195334 197215 . - . ID=Phyra81694;Parent=Phyra81694;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 195334 195370 . - 0 ID=Phyra81694;Parent=Phyra81694;rank=3 scaffold_62 . exon 195334 195370 . - . ID=Phyra81694.3;Parent=Phyra81694;constitutive=1;ensembl_phase=2;rank=3 scaffold_62 . CDS 196146 197086 . - 0 ID=Phyra81694;Parent=Phyra81694;rank=2 scaffold_62 . exon 196146 197086 . - . ID=Phyra81694.2;Parent=Phyra81694;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_62 . CDS 197141 197215 . - 0 ID=Phyra81694;Parent=Phyra81694;rank=1 scaffold_62 ensembl protein_coding_gene 187390 187983 . + . ID=Phyra96088;biotype=protein_coding;external_name=C_scaffold_62000018;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 187390 187983 . + . ID=Phyra96088;Parent=Phyra96088;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 187390 187678 . + 0 ID=Phyra96088;Parent=Phyra96088;rank=1 scaffold_62 . exon 187390 187678 . + . ID=Phyra96088.1;Parent=Phyra96088;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 187757 187983 . + 0 ID=Phyra96088;Parent=Phyra96088;rank=2 scaffold_62 . exon 187757 187983 . + . ID=Phyra96088.2;Parent=Phyra96088;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 ensembl protein_coding_gene 188197 188937 . - . ID=Phyra96089;biotype=protein_coding;external_name=C_scaffold_62000019;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 188197 188937 . - . ID=Phyra96089;Parent=Phyra96089;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 188197 188203 . - 0 ID=Phyra96089;Parent=Phyra96089;rank=3 scaffold_62 . exon 188197 188203 . - . ID=Phyra96089.3;Parent=Phyra96089;constitutive=1;ensembl_phase=2;rank=3 scaffold_62 . CDS 188281 188290 . - 0 ID=Phyra96089;Parent=Phyra96089;rank=2 scaffold_62 . exon 188281 188290 . - . ID=Phyra96089.2;Parent=Phyra96089;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_62 . CDS 188379 188937 . - 0 ID=Phyra96089;Parent=Phyra96089;rank=1 scaffold_62 . exon 188379 188937 . - . ID=Phyra96089.1;Parent=Phyra96089;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 ensembl protein_coding_gene 189036 189328 . + . ID=Phyra96090;biotype=protein_coding;external_name=C_scaffold_62000020;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 189036 189328 . + . ID=Phyra96090;Parent=Phyra96090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 189036 189150 . + 0 ID=Phyra96090;Parent=Phyra96090;rank=1 scaffold_62 . exon 189036 189150 . + . ID=Phyra96090.1;Parent=Phyra96090;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 189228 189328 . + 0 ID=Phyra96090;Parent=Phyra96090;rank=2 scaffold_62 . exon 189228 189328 . + . ID=Phyra96090.2;Parent=Phyra96090;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 ensembl protein_coding_gene 189416 190523 . - . ID=Phyra96091;biotype=protein_coding;external_name=C_scaffold_62000021;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 189416 190523 . - . ID=Phyra96091;Parent=Phyra96091;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 189416 189657 . - 0 ID=Phyra96091;Parent=Phyra96091;rank=3 scaffold_62 . exon 189416 189657 . - . ID=Phyra96091.3;Parent=Phyra96091;constitutive=1;ensembl_phase=1;rank=3 scaffold_62 . CDS 189718 190315 . - 0 ID=Phyra96091;Parent=Phyra96091;rank=2 scaffold_62 . exon 189718 190315 . - . ID=Phyra96091.2;Parent=Phyra96091;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_62 . CDS 190413 190523 . - 0 ID=Phyra96091;Parent=Phyra96091;rank=1 scaffold_62 . exon 190413 190523 . - . ID=Phyra96091.1;Parent=Phyra96091;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 190680 192119 . + . ID=Phyra96093;biotype=protein_coding;external_name=C_scaffold_62000023;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 190680 192119 . + . ID=Phyra96093;Parent=Phyra96093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 190680 190754 . + 0 ID=Phyra96093;Parent=Phyra96093;rank=1 scaffold_62 . exon 190680 190754 . + . ID=Phyra96093.1;Parent=Phyra96093;constitutive=1;rank=1 scaffold_62 . CDS 190811 190941 . + 0 ID=Phyra96093;Parent=Phyra96093;rank=2 scaffold_62 . exon 190811 190941 . + . ID=Phyra96093.2;Parent=Phyra96093;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_62 . CDS 191355 191407 . + 0 ID=Phyra96093;Parent=Phyra96093;rank=3 scaffold_62 . exon 191355 191407 . + . ID=Phyra96093.3;Parent=Phyra96093;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_62 . CDS 191467 192119 . + 0 ID=Phyra96093;Parent=Phyra96093;rank=4 scaffold_62 . exon 191467 192119 . + . ID=Phyra96093.4;Parent=Phyra96093;constitutive=1;ensembl_phase=1;rank=4 scaffold_62 ensembl protein_coding_gene 192241 194164 . - . ID=Phyra96095;biotype=protein_coding;external_name=C_scaffold_62000025;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 192241 194164 . - . ID=Phyra96095;Parent=Phyra96095;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 192241 192418 . - 0 ID=Phyra96095;Parent=Phyra96095;rank=7 scaffold_62 . exon 192241 192418 . - . ID=Phyra96095.7;Parent=Phyra96095;constitutive=1;ensembl_phase=2;rank=7 scaffold_62 . CDS 192518 193362 . - 0 ID=Phyra96095;Parent=Phyra96095;rank=6 scaffold_62 . exon 192518 193362 . - . ID=Phyra96095.6;Parent=Phyra96095;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_62 . CDS 193441 193444 . - 0 ID=Phyra96095;Parent=Phyra96095;rank=5 scaffold_62 . exon 193441 193444 . - . ID=Phyra96095.5;Parent=Phyra96095;constitutive=1;ensembl_phase=2;rank=5 scaffold_62 . CDS 193613 193702 . - 0 ID=Phyra96095;Parent=Phyra96095;rank=4 scaffold_62 . exon 193613 193702 . - . ID=Phyra96095.4;Parent=Phyra96095;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_62 . CDS 193771 193877 . - 0 ID=Phyra96095;Parent=Phyra96095;rank=3 scaffold_62 . exon 193771 193877 . - . ID=Phyra96095.3;Parent=Phyra96095;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_62 . CDS 193955 194020 . - 0 ID=Phyra96095;Parent=Phyra96095;rank=2 scaffold_62 . exon 193955 194020 . - . ID=Phyra96095.2;Parent=Phyra96095;constitutive=1;rank=2 scaffold_62 . CDS 194102 194164 . - 0 ID=Phyra96095;Parent=Phyra96095;rank=1 scaffold_62 . exon 194102 194164 . - . ID=Phyra96095.1;Parent=Phyra96095;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 200728 201330 . + . ID=Phyra71949;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_62000012;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 200728 201330 . + . ID=Phyra71949;Parent=Phyra71949;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 200728 201330 . + 0 ID=Phyra71949;Parent=Phyra71949;rank=1 scaffold_62 . exon 200728 201330 . + . ID=Phyra71949.1;Parent=Phyra71949;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 203050 203652 . - . ID=Phyra71950;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_62000013;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 203050 203652 . - . ID=Phyra71950;Parent=Phyra71950;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 203050 203652 . - 0 ID=Phyra71950;Parent=Phyra71950;rank=1 scaffold_62 . exon 203050 203652 . - . ID=Phyra71950.1;Parent=Phyra71950;constitutive=1;rank=1 scaffold_62 . exon 197141 197215 . - . ID=Phyra81694.1;Parent=Phyra81694;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 199028 199630 . - . ID=Phyra81696;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000078;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 199028 199630 . - . ID=Phyra81696;Parent=Phyra81696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 199028 199630 . - 0 ID=Phyra81696;Parent=Phyra81696;rank=1 scaffold_62 . exon 199028 199630 . - . ID=Phyra81696.1;Parent=Phyra81696;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 204650 207694 . - . ID=Phyra81699;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000081;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 204650 207694 . - . ID=Phyra81699;Parent=Phyra81699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 204650 205212 . - 0 ID=Phyra81699;Parent=Phyra81699;rank=3 scaffold_62 . exon 204650 205212 . - . ID=Phyra81699.3;Parent=Phyra81699;constitutive=1;ensembl_phase=1;rank=3 scaffold_62 . CDS 205393 207531 . - 0 ID=Phyra81699;Parent=Phyra81699;rank=2 scaffold_62 . exon 205393 207531 . - . ID=Phyra81699.2;Parent=Phyra81699;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 207559 207694 . - 0 ID=Phyra81699;Parent=Phyra81699;rank=1 scaffold_62 ensembl protein_coding_gene 197354 197956 . - . ID=Phyra96097;biotype=protein_coding;external_name=C_scaffold_62000027;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 197354 197956 . - . ID=Phyra96097;Parent=Phyra96097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 197354 197956 . - 0 ID=Phyra96097;Parent=Phyra96097;rank=1 scaffold_62 . exon 197354 197956 . - . ID=Phyra96097.1;Parent=Phyra96097;constitutive=1;rank=1 scaffold_62 . repeat_region 206822 206829 . ? . description=dust scaffold_62 . repeat_region 210550 210600 . ? . description=dust scaffold_62 . repeat_region 210554 210600 . ? . description=trf scaffold_62 . repeat_region 210560 210600 . ? . description=trf scaffold_62 . biological_region 211352 211355 0.999 + . logic_name=eponine scaffold_62 . biological_region 211379 211381 0.999 + . logic_name=eponine scaffold_62 . biological_region 214228 214231 0.999 - . logic_name=eponine scaffold_62 . biological_region 214532 214533 0.999 - . logic_name=eponine scaffold_62 . biological_region 215969 215977 0.999 + . logic_name=eponine scaffold_62 ensembl protein_coding_gene 210975 214625 . - . ID=Phyra51696;biotype=protein_coding;external_name=gwEuk.62.25.1;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 210975 214625 . - . ID=Phyra51696;Parent=Phyra51696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 210975 214625 . - 0 ID=Phyra51696;Parent=Phyra51696;rank=1 scaffold_62 . exon 210975 214625 . - . ID=Phyra51696.1;Parent=Phyra51696;constitutive=1;rank=1 scaffold_62 . exon 207559 207694 . - . ID=Phyra81699.1;Parent=Phyra81699;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 ensembl protein_coding_gene 216005 217042 . + . ID=Phyra81702;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000084;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 216005 217042 . + . ID=Phyra81702;Parent=Phyra81702;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 216005 217042 . + 0 ID=Phyra81702;Parent=Phyra81702;rank=1 scaffold_62 . exon 216005 217042 . + . ID=Phyra81702.1;Parent=Phyra81702;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 217557 219041 . - . ID=Phyra81703;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000085;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 217557 219041 . - . ID=Phyra81703;Parent=Phyra81703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 217557 217676 . - 0 ID=Phyra81703;Parent=Phyra81703;rank=8 scaffold_62 . exon 217557 217676 . - . ID=Phyra81703.8;Parent=Phyra81703;constitutive=1;rank=8 scaffold_62 . CDS 217746 217814 . - 0 ID=Phyra81703;Parent=Phyra81703;rank=7 scaffold_62 . exon 217746 217814 . - . ID=Phyra81703.7;Parent=Phyra81703;constitutive=1;rank=7 scaffold_62 . CDS 217899 217997 . - 0 ID=Phyra81703;Parent=Phyra81703;rank=6 scaffold_62 . exon 217899 217997 . - . ID=Phyra81703.6;Parent=Phyra81703;constitutive=1;rank=6 scaffold_62 . CDS 218113 218221 . - 0 ID=Phyra81703;Parent=Phyra81703;rank=5 scaffold_62 . exon 218113 218221 . - . ID=Phyra81703.5;Parent=Phyra81703;constitutive=1;ensembl_phase=2;rank=5 scaffold_62 . CDS 218291 218506 . - 0 ID=Phyra81703;Parent=Phyra81703;rank=4 scaffold_62 . exon 218291 218506 . - . ID=Phyra81703.4;Parent=Phyra81703;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_62 . CDS 218578 218672 . - 0 ID=Phyra81703;Parent=Phyra81703;rank=3 scaffold_62 . exon 218578 218672 . - . ID=Phyra81703.3;Parent=Phyra81703;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_62 . CDS 218742 218828 . - 0 ID=Phyra81703;Parent=Phyra81703;rank=2 scaffold_62 . exon 218742 218828 . - . ID=Phyra81703.2;Parent=Phyra81703;constitutive=1;rank=2 scaffold_62 . CDS 218874 219041 . - 0 ID=Phyra81703;Parent=Phyra81703;rank=1 scaffold_62 . exon 218874 219041 . - . ID=Phyra81703.1;Parent=Phyra81703;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 221144 222106 . + . ID=Phyra81704;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000086;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 221144 222106 . + . ID=Phyra81704;Parent=Phyra81704;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 221144 222106 . + 0 ID=Phyra81704;Parent=Phyra81704;rank=1 scaffold_62 . exon 221144 222106 . + . ID=Phyra81704.1;Parent=Phyra81704;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 223459 224673 . - . ID=Phyra81705;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000087;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 223459 224673 . - . ID=Phyra81705;Parent=Phyra81705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 223459 224673 . - 0 ID=Phyra81705;Parent=Phyra81705;rank=1 scaffold_62 . exon 223459 224673 . - . ID=Phyra81705.1;Parent=Phyra81705;constitutive=1;rank=1 scaffold_62 . repeat_region 225601 226151 . ? . description=dust scaffold_62 . repeat_region 226180 226215 . ? . description=trf scaffold_62 . repeat_region 226814 236623 . ? . description=dust scaffold_62 . biological_region 237564 237566 0.999 - . logic_name=eponine scaffold_62 . biological_region 238032 238034 0.999 - . logic_name=eponine scaffold_62 . biological_region 238578 238580 0.999 - . logic_name=eponine scaffold_62 . biological_region 239013 239015 0.999 - . logic_name=eponine scaffold_62 . biological_region 239488 239490 0.999 - . logic_name=eponine scaffold_62 . biological_region 239541 239545 0.999 + . logic_name=eponine scaffold_62 . biological_region 239896 239898 0.999 - . logic_name=eponine scaffold_62 . biological_region 239990 239992 0.999 - . logic_name=eponine scaffold_62 . biological_region 243831 243834 0.999 - . logic_name=eponine scaffold_62 . biological_region 243934 243934 0.999 - . logic_name=eponine scaffold_62 ensembl protein_coding_gene 236893 240030 . - . ID=Phyra81706;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000088;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 236893 240030 . - . ID=Phyra81706;Parent=Phyra81706;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 236893 236909 . - 0 ID=Phyra81706;Parent=Phyra81706;rank=3 scaffold_62 . exon 236893 236909 . - . ID=Phyra81706.3;Parent=Phyra81706;constitutive=1;ensembl_phase=1;rank=3 scaffold_62 . CDS 236950 239368 . - 0 ID=Phyra81706;Parent=Phyra81706;rank=2 scaffold_62 . exon 236950 239368 . - . ID=Phyra81706.2;Parent=Phyra81706;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_62 . CDS 239410 240030 . - 0 ID=Phyra81706;Parent=Phyra81706;rank=1 scaffold_62 . exon 239410 240030 . - . ID=Phyra81706.1;Parent=Phyra81706;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 243767 245867 . + . ID=Phyra81707;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000089;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 243767 245867 . + . ID=Phyra81707;Parent=Phyra81707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 243767 244161 . + 0 ID=Phyra81707;Parent=Phyra81707;rank=1 scaffold_62 . exon 243767 244161 . + . ID=Phyra81707.1;Parent=Phyra81707;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 . CDS 244216 245815 . + 0 ID=Phyra81707;Parent=Phyra81707;rank=2 scaffold_62 . exon 244216 245815 . + . ID=Phyra81707.2;Parent=Phyra81707;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 . CDS 245835 245867 . + 0 ID=Phyra81707;Parent=Phyra81707;rank=3 scaffold_62 . repeat_region 254340 254360 . ? . description=trf scaffold_62 . exon 245835 245867 . + . ID=Phyra81707.3;Parent=Phyra81707;constitutive=1;rank=3 scaffold_62 ensembl protein_coding_gene 246863 248161 . - . ID=Phyra81708;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000090;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 246863 248161 . - . ID=Phyra81708;Parent=Phyra81708;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 246863 248161 . - 0 ID=Phyra81708;Parent=Phyra81708;rank=1 scaffold_62 . exon 246863 248161 . - . ID=Phyra81708.1;Parent=Phyra81708;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 249006 254008 . - . ID=Phyra96102;biotype=protein_coding;external_name=C_scaffold_62000032;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 249006 254008 . - . ID=Phyra96102;Parent=Phyra96102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 249006 249045 . - 0 ID=Phyra96102;Parent=Phyra96102;rank=13 scaffold_62 . exon 249006 249045 . - . ID=Phyra96102.13;Parent=Phyra96102;constitutive=1;ensembl_phase=2;rank=13 scaffold_62 . CDS 249114 249276 . - 0 ID=Phyra96102;Parent=Phyra96102;rank=12 scaffold_62 . exon 249114 249276 . - . ID=Phyra96102.12;Parent=Phyra96102;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_62 . CDS 249343 249414 . - 0 ID=Phyra96102;Parent=Phyra96102;rank=11 scaffold_62 . exon 249343 249414 . - . ID=Phyra96102.11;Parent=Phyra96102;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_62 . CDS 249520 249566 . - 0 ID=Phyra96102;Parent=Phyra96102;rank=10 scaffold_62 . exon 249520 249566 . - . ID=Phyra96102.10;Parent=Phyra96102;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_62 . CDS 249615 249804 . - 0 ID=Phyra96102;Parent=Phyra96102;rank=9 scaffold_62 . exon 249615 249804 . - . ID=Phyra96102.9;Parent=Phyra96102;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_62 . CDS 249973 250015 . - 0 ID=Phyra96102;Parent=Phyra96102;rank=8 scaffold_62 . exon 249973 250015 . - . ID=Phyra96102.8;Parent=Phyra96102;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_62 . CDS 250078 250615 . - 0 ID=Phyra96102;Parent=Phyra96102;rank=7 scaffold_62 . exon 250078 250615 . - . ID=Phyra96102.7;Parent=Phyra96102;constitutive=1;ensembl_phase=2;rank=7 scaffold_62 . CDS 250842 252012 . - 0 ID=Phyra96102;Parent=Phyra96102;rank=6 scaffold_62 . exon 250842 252012 . - . ID=Phyra96102.6;Parent=Phyra96102;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_62 . CDS 252385 252655 . - 0 ID=Phyra96102;Parent=Phyra96102;rank=5 scaffold_62 . exon 252385 252655 . - . ID=Phyra96102.5;Parent=Phyra96102;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_62 . CDS 252736 252986 . - 0 ID=Phyra96102;Parent=Phyra96102;rank=4 scaffold_62 . exon 252736 252986 . - . ID=Phyra96102.4;Parent=Phyra96102;constitutive=1;ensembl_phase=1;rank=4 scaffold_62 . CDS 253068 253192 . - 0 ID=Phyra96102;Parent=Phyra96102;rank=3 scaffold_62 . exon 253068 253192 . - . ID=Phyra96102.3;Parent=Phyra96102;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_62 . CDS 253263 253466 . - 0 ID=Phyra96102;Parent=Phyra96102;rank=2 scaffold_62 . exon 253263 253466 . - . ID=Phyra96102.2;Parent=Phyra96102;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_62 . CDS 253506 254008 . - 0 ID=Phyra96102;Parent=Phyra96102;rank=1 scaffold_62 . exon 253506 254008 . - . ID=Phyra96102.1;Parent=Phyra96102;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 255473 258069 . + . ID=Phyra96104;biotype=protein_coding;external_name=C_scaffold_62000034;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 255473 258069 . + . ID=Phyra96104;Parent=Phyra96104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 255473 255500 . + 0 ID=Phyra96104;Parent=Phyra96104;rank=1 scaffold_62 . exon 255473 255500 . + . ID=Phyra96104.1;Parent=Phyra96104;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 255569 255702 . + 0 ID=Phyra96104;Parent=Phyra96104;rank=2 scaffold_62 . CDS 255767 256583 . + 0 ID=Phyra96104;Parent=Phyra96104;rank=3 scaffold_62 . CDS 256661 256848 . + 0 ID=Phyra96104;Parent=Phyra96104;rank=4 scaffold_62 . CDS 256887 256934 . + 0 ID=Phyra96104;Parent=Phyra96104;rank=5 scaffold_62 . CDS 257144 257344 . + 0 ID=Phyra96104;Parent=Phyra96104;rank=6 scaffold_62 . CDS 257401 258069 . + 0 ID=Phyra96104;Parent=Phyra96104;rank=7 scaffold_62 . biological_region 256450 256452 0.999 - . logic_name=eponine scaffold_62 . biological_region 260757 260759 0.999 + . logic_name=eponine scaffold_62 . biological_region 262065 262069 0.999 - . logic_name=eponine scaffold_62 . biological_region 264448 264450 0.999 + . logic_name=eponine scaffold_62 ensembl protein_coding_gene 258354 260927 . - . ID=Phyra81712;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000094;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 258354 260927 . - . ID=Phyra81712;Parent=Phyra81712;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 258354 260927 . - 0 ID=Phyra81712;Parent=Phyra81712;rank=1 scaffold_62 . exon 258354 260927 . - . ID=Phyra81712.1;Parent=Phyra81712;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 261022 262671 . - . ID=Phyra81713;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000095;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 261022 262671 . - . ID=Phyra81713;Parent=Phyra81713;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 261022 262671 . - 0 ID=Phyra81713;Parent=Phyra81713;rank=1 scaffold_62 . exon 261022 262671 . - . ID=Phyra81713.1;Parent=Phyra81713;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 264201 265040 . + . ID=Phyra81714;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000096;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 264201 265040 . + . ID=Phyra81714;Parent=Phyra81714;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 264201 265040 . + 0 ID=Phyra81714;Parent=Phyra81714;rank=1 scaffold_62 . exon 264201 265040 . + . ID=Phyra81714.1;Parent=Phyra81714;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 265144 266766 . - . ID=Phyra81715;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000097;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 265144 266766 . - . ID=Phyra81715;Parent=Phyra81715;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 265144 266766 . - 0 ID=Phyra81715;Parent=Phyra81715;rank=1 scaffold_62 . exon 265144 266766 . - . ID=Phyra81715.1;Parent=Phyra81715;constitutive=1;rank=1 scaffold_62 . exon 255569 255702 . + . ID=Phyra96104.2;Parent=Phyra96104;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 . exon 255767 256583 . + . ID=Phyra96104.3;Parent=Phyra96104;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_62 . exon 256661 256848 . + . ID=Phyra96104.4;Parent=Phyra96104;constitutive=1;ensembl_phase=1;rank=4 scaffold_62 . exon 256887 256934 . + . ID=Phyra96104.5;Parent=Phyra96104;constitutive=1;rank=5 scaffold_62 . exon 257144 257344 . + . ID=Phyra96104.6;Parent=Phyra96104;constitutive=1;rank=6 scaffold_62 . exon 257401 258069 . + . ID=Phyra96104.7;Parent=Phyra96104;constitutive=1;rank=7 scaffold_62 . repeat_region 268185 268193 . ? . description=dust scaffold_62 ensembl protein_coding_gene 268602 269591 . + . ID=Phyra81716;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000098;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 268602 269591 . + . ID=Phyra81716;Parent=Phyra81716;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 268602 269591 . + 0 ID=Phyra81716;Parent=Phyra81716;rank=1 scaffold_62 . exon 268602 269591 . + . ID=Phyra81716.1;Parent=Phyra81716;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 271169 275465 . + . ID=Phyra96106;biotype=protein_coding;external_name=C_scaffold_62000036;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 271169 275465 . + . ID=Phyra96106;Parent=Phyra96106;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 271169 271467 . + 0 ID=Phyra96106;Parent=Phyra96106;rank=1 scaffold_62 . exon 271169 271467 . + . ID=Phyra96106.1;Parent=Phyra96106;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 . CDS 271507 272784 . + 0 ID=Phyra96106;Parent=Phyra96106;rank=2 scaffold_62 . exon 271507 272784 . + . ID=Phyra96106.2;Parent=Phyra96106;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_62 . CDS 273065 273295 . + 0 ID=Phyra96106;Parent=Phyra96106;rank=3 scaffold_62 . exon 273065 273295 . + . ID=Phyra96106.3;Parent=Phyra96106;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_62 . CDS 273431 273605 . + 0 ID=Phyra96106;Parent=Phyra96106;rank=4 scaffold_62 . exon 273431 273605 . + . ID=Phyra96106.4;Parent=Phyra96106;constitutive=1;ensembl_phase=2;rank=4 scaffold_62 . CDS 273681 273765 . + 0 ID=Phyra96106;Parent=Phyra96106;rank=5 scaffold_62 . exon 273681 273765 . + . ID=Phyra96106.5;Parent=Phyra96106;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_62 . CDS 273829 274190 . + 0 ID=Phyra96106;Parent=Phyra96106;rank=6 scaffold_62 . exon 273829 274190 . + . ID=Phyra96106.6;Parent=Phyra96106;constitutive=1;ensembl_phase=1;rank=6 scaffold_62 . CDS 274260 274595 . + 0 ID=Phyra96106;Parent=Phyra96106;rank=7 scaffold_62 . exon 274260 274595 . + . ID=Phyra96106.7;Parent=Phyra96106;constitutive=1;rank=7 scaffold_62 . CDS 274673 275320 . + 0 ID=Phyra96106;Parent=Phyra96106;rank=8 scaffold_62 . exon 274673 275320 . + . ID=Phyra96106.8;Parent=Phyra96106;constitutive=1;rank=8 scaffold_62 . CDS 275424 275465 . + 0 ID=Phyra96106;Parent=Phyra96106;rank=9 scaffold_62 . biological_region 275300 275303 0.999 + . logic_name=eponine scaffold_62 . biological_region 275320 275322 0.999 + . logic_name=eponine scaffold_62 . biological_region 275665 275667 0.999 - . logic_name=eponine scaffold_62 . biological_region 276577 276578 0.999 - . logic_name=eponine scaffold_62 . biological_region 277588 277589 0.999 + . logic_name=eponine scaffold_62 . biological_region 277783 277783 0.999 - . logic_name=eponine scaffold_62 . biological_region 278540 278542 0.999 + . logic_name=eponine scaffold_62 . biological_region 278840 278843 0.999 - . logic_name=eponine scaffold_62 . biological_region 278861 278864 0.999 - . logic_name=eponine scaffold_62 . biological_region 278896 278897 0.999 + . logic_name=eponine scaffold_62 . biological_region 278918 278919 0.999 + . logic_name=eponine scaffold_62 . repeat_region 278994 279034 . ? . description=trf scaffold_62 . biological_region 279090 279094 0.999 - . logic_name=eponine scaffold_62 . biological_region 279607 279610 0.999 + . logic_name=eponine scaffold_62 . repeat_region 279617 279672 . ? . description=trf scaffold_62 . biological_region 279702 279706 0.999 + . logic_name=eponine scaffold_62 . biological_region 279785 279786 0.999 - . logic_name=eponine scaffold_62 . repeat_region 279944 280007 . ? . description=trf scaffold_62 . biological_region 280006 280011 0.999 - . logic_name=eponine scaffold_62 . biological_region 280411 280418 0.999 + . logic_name=eponine scaffold_62 . biological_region 280569 280572 0.999 - . logic_name=eponine scaffold_62 . biological_region 283982 283985 0.999 + . logic_name=eponine scaffold_62 . biological_region 284945 284946 0.999 + . logic_name=eponine scaffold_62 ensembl protein_coding_gene 276274 279174 . - . ID=Phyra81718;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000100;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 276274 279174 . - . ID=Phyra81718;Parent=Phyra81718;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 276274 279174 . - 0 ID=Phyra81718;Parent=Phyra81718;rank=1 scaffold_62 . exon 276274 279174 . - . ID=Phyra81718.1;Parent=Phyra81718;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 279595 280707 . - . ID=Phyra81719;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000101;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 279595 280707 . - . ID=Phyra81719;Parent=Phyra81719;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 279595 280707 . - 0 ID=Phyra81719;Parent=Phyra81719;rank=1 scaffold_62 . exon 279595 280707 . - . ID=Phyra81719.1;Parent=Phyra81719;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 282664 283829 . + . ID=Phyra81720;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000102;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 282664 283829 . + . ID=Phyra81720;Parent=Phyra81720;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 282664 282923 . + 0 ID=Phyra81720;Parent=Phyra81720;rank=1 scaffold_62 . exon 282664 282923 . + . ID=Phyra81720.1;Parent=Phyra81720;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 . CDS 282991 283240 . + 0 ID=Phyra81720;Parent=Phyra81720;rank=2 scaffold_62 . exon 282991 283240 . + . ID=Phyra81720.2;Parent=Phyra81720;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 . CDS 283320 283444 . + 0 ID=Phyra81720;Parent=Phyra81720;rank=3 scaffold_62 . exon 283320 283444 . + . ID=Phyra81720.3;Parent=Phyra81720;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_62 . CDS 283506 283644 . + 0 ID=Phyra81720;Parent=Phyra81720;rank=4 scaffold_62 . exon 283506 283644 . + . ID=Phyra81720.4;Parent=Phyra81720;constitutive=1;ensembl_phase=2;rank=4 scaffold_62 . CDS 283704 283829 . + 0 ID=Phyra81720;Parent=Phyra81720;rank=5 scaffold_62 . exon 283704 283829 . + . ID=Phyra81720.5;Parent=Phyra81720;constitutive=1;rank=5 scaffold_62 ensembl protein_coding_gene 283920 286082 . + . ID=Phyra81721;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000103;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 283920 286082 . + . ID=Phyra81721;Parent=Phyra81721;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 283920 284322 . + 0 ID=Phyra81721;Parent=Phyra81721;rank=1 scaffold_62 . exon 283920 284322 . + . ID=Phyra81721.1;Parent=Phyra81721;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 284373 284437 . + 0 ID=Phyra81721;Parent=Phyra81721;rank=2 scaffold_62 . exon 284373 284437 . + . ID=Phyra81721.2;Parent=Phyra81721;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 284496 284566 . + 0 ID=Phyra81721;Parent=Phyra81721;rank=3 scaffold_62 . exon 284496 284566 . + . ID=Phyra81721.3;Parent=Phyra81721;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_62 . CDS 284640 285396 . + 0 ID=Phyra81721;Parent=Phyra81721;rank=4 scaffold_62 . exon 284640 285396 . + . ID=Phyra81721.4;Parent=Phyra81721;constitutive=1;ensembl_phase=2;rank=4 scaffold_62 . CDS 285453 286082 . + 0 ID=Phyra81721;Parent=Phyra81721;rank=5 scaffold_62 . exon 275424 275465 . + . ID=Phyra96106.9;Parent=Phyra96106;constitutive=1;rank=9 scaffold_62 . repeat_region 289889 289896 . ? . description=dust scaffold_62 . exon 285453 286082 . + . ID=Phyra81721.5;Parent=Phyra81721;constitutive=1;rank=5 scaffold_62 ensembl protein_coding_gene 290030 291915 . + . ID=Phyra81723;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000105;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 290030 291915 . + . ID=Phyra81723;Parent=Phyra81723;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 290030 290482 . + 0 ID=Phyra81723;Parent=Phyra81723;rank=1 scaffold_62 . exon 290030 290482 . + . ID=Phyra81723.1;Parent=Phyra81723;constitutive=1;rank=1 scaffold_62 . CDS 290550 290798 . + 0 ID=Phyra81723;Parent=Phyra81723;rank=2 scaffold_62 . exon 290550 290798 . + . ID=Phyra81723.2;Parent=Phyra81723;constitutive=1;rank=2 scaffold_62 . CDS 291110 291196 . + 0 ID=Phyra81723;Parent=Phyra81723;rank=3 scaffold_62 . exon 291110 291196 . + . ID=Phyra81723.3;Parent=Phyra81723;constitutive=1;rank=3 scaffold_62 . CDS 291262 291915 . + 0 ID=Phyra81723;Parent=Phyra81723;rank=4 scaffold_62 . exon 291262 291915 . + . ID=Phyra81723.4;Parent=Phyra81723;constitutive=1;rank=4 scaffold_62 ensembl protein_coding_gene 292121 294417 . + . ID=Phyra81724;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000106;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 292121 294417 . + . ID=Phyra81724;Parent=Phyra81724;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 292121 294295 . + 0 ID=Phyra81724;Parent=Phyra81724;rank=1 scaffold_62 . exon 292121 294295 . + . ID=Phyra81724.1;Parent=Phyra81724;constitutive=1;rank=1 scaffold_62 . CDS 294409 294417 . + 0 ID=Phyra81724;Parent=Phyra81724;rank=2 scaffold_62 . exon 294409 294417 . + . ID=Phyra81724.2;Parent=Phyra81724;constitutive=1;rank=2 scaffold_62 ensembl protein_coding_gene 286100 289419 . - . ID=Phyra96108;biotype=protein_coding;external_name=C_scaffold_62000038;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 286100 289419 . - . ID=Phyra96108;Parent=Phyra96108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 286100 286261 . - 0 ID=Phyra96108;Parent=Phyra96108;rank=8 scaffold_62 . exon 286100 286261 . - . ID=Phyra96108.8;Parent=Phyra96108;constitutive=1;rank=8 scaffold_62 . CDS 286289 287761 . - 0 ID=Phyra96108;Parent=Phyra96108;rank=7 scaffold_62 . exon 286289 287761 . - . ID=Phyra96108.7;Parent=Phyra96108;constitutive=1;rank=7 scaffold_62 . CDS 287852 288129 . - 0 ID=Phyra96108;Parent=Phyra96108;rank=6 scaffold_62 . exon 287852 288129 . - . ID=Phyra96108.6;Parent=Phyra96108;constitutive=1;ensembl_phase=1;rank=6 scaffold_62 . CDS 288202 288319 . - 0 ID=Phyra96108;Parent=Phyra96108;rank=5 scaffold_62 . exon 288202 288319 . - . ID=Phyra96108.5;Parent=Phyra96108;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_62 . CDS 288383 288410 . - 0 ID=Phyra96108;Parent=Phyra96108;rank=4 scaffold_62 . exon 288383 288410 . - . ID=Phyra96108.4;Parent=Phyra96108;constitutive=1;ensembl_phase=2;rank=4 scaffold_62 . CDS 288476 288583 . - 0 ID=Phyra96108;Parent=Phyra96108;rank=3 scaffold_62 . exon 288476 288583 . - . ID=Phyra96108.3;Parent=Phyra96108;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_62 . CDS 288640 288980 . - 0 ID=Phyra96108;Parent=Phyra96108;rank=2 scaffold_62 . exon 288640 288980 . - . ID=Phyra96108.2;Parent=Phyra96108;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_62 . CDS 289042 289419 . - 0 ID=Phyra96108;Parent=Phyra96108;rank=1 scaffold_62 . exon 289042 289419 . - . ID=Phyra96108.1;Parent=Phyra96108;constitutive=1;rank=1 scaffold_62 . biological_region 297649 297653 0.999 - . logic_name=eponine scaffold_62 . biological_region 297723 297725 0.999 - . logic_name=eponine scaffold_62 . biological_region 297961 297962 0.999 - . logic_name=eponine scaffold_62 . repeat_region 299968 300891 . ? . description=trf scaffold_62 ensembl protein_coding_gene 294900 295995 . - . ID=Phyra81725;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000107;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 294900 295995 . - . ID=Phyra81725;Parent=Phyra81725;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 294900 295160 . - 0 ID=Phyra81725;Parent=Phyra81725;rank=3 scaffold_62 . exon 294900 295160 . - . ID=Phyra81725.3;Parent=Phyra81725;constitutive=1;rank=3 scaffold_62 . CDS 295234 295785 . - 0 ID=Phyra81725;Parent=Phyra81725;rank=2 scaffold_62 . exon 295234 295785 . - . ID=Phyra81725.2;Parent=Phyra81725;constitutive=1;rank=2 scaffold_62 . CDS 295870 295995 . - 0 ID=Phyra81725;Parent=Phyra81725;rank=1 scaffold_62 . exon 295870 295995 . - . ID=Phyra81725.1;Parent=Phyra81725;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 296992 303183 . + . ID=Phyra81726;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000108;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 296992 303183 . + . ID=Phyra81726;Parent=Phyra81726;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 296992 297200 . + 0 ID=Phyra81726;Parent=Phyra81726;rank=1 scaffold_62 . exon 296992 297200 . + . ID=Phyra81726.1;Parent=Phyra81726;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 . CDS 297526 303063 . + 0 ID=Phyra81726;Parent=Phyra81726;rank=2 scaffold_62 . exon 297526 303063 . + . ID=Phyra81726.2;Parent=Phyra81726;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_62 . CDS 303162 303183 . + 0 ID=Phyra81726;Parent=Phyra81726;rank=3 scaffold_62 . exon 303162 303183 . + . ID=Phyra81726.3;Parent=Phyra81726;constitutive=1;ensembl_phase=2;rank=3 scaffold_62 . repeat_region 303349 314719 . ? . description=dust scaffold_62 . repeat_region 320518 324048 . ? . description=trf scaffold_62 . biological_region 320887 320889 0.999 + . logic_name=eponine scaffold_62 ensembl protein_coding_gene 315064 315553 . + . ID=Phyra81727;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000109;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 315064 315553 . + . ID=Phyra81727;Parent=Phyra81727;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 315064 315250 . + 0 ID=Phyra81727;Parent=Phyra81727;rank=1 scaffold_62 . exon 315064 315250 . + . ID=Phyra81727.1;Parent=Phyra81727;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 315326 315395 . + 0 ID=Phyra81727;Parent=Phyra81727;rank=2 scaffold_62 . exon 315326 315395 . + . ID=Phyra81727.2;Parent=Phyra81727;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_62 . CDS 315417 315447 . + 0 ID=Phyra81727;Parent=Phyra81727;rank=3 scaffold_62 . exon 315417 315447 . + . ID=Phyra81727.3;Parent=Phyra81727;constitutive=1;ensembl_phase=2;rank=3 scaffold_62 . CDS 315539 315553 . + 0 ID=Phyra81727;Parent=Phyra81727;rank=4 scaffold_62 . exon 315539 315553 . + . ID=Phyra81727.4;Parent=Phyra81727;constitutive=1;rank=4 scaffold_62 ensembl protein_coding_gene 317739 329523 . - . ID=Phyra81728;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000110;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 317739 329523 . - . ID=Phyra81728;Parent=Phyra81728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 317739 317791 . - 0 ID=Phyra81728;Parent=Phyra81728;rank=8 scaffold_62 . exon 317739 317791 . - . ID=Phyra81728.8;Parent=Phyra81728;constitutive=1;ensembl_phase=1;rank=8 scaffold_62 . CDS 317841 319284 . - 0 ID=Phyra81728;Parent=Phyra81728;rank=7 scaffold_62 . exon 317841 319284 . - . ID=Phyra81728.7;Parent=Phyra81728;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_62 . CDS 320586 321010 . - 0 ID=Phyra81728;Parent=Phyra81728;rank=6 scaffold_62 . exon 320586 321010 . - . ID=Phyra81728.6;Parent=Phyra81728;constitutive=1;ensembl_phase=1;rank=6 scaffold_62 . CDS 321183 324063 . - 0 ID=Phyra81728;Parent=Phyra81728;rank=5 scaffold_62 . exon 321183 324063 . - . ID=Phyra81728.5;Parent=Phyra81728;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_62 . CDS 324304 325556 . - 0 ID=Phyra81728;Parent=Phyra81728;rank=4 scaffold_62 . exon 324304 325556 . - . ID=Phyra81728.4;Parent=Phyra81728;constitutive=1;ensembl_phase=1;rank=4 scaffold_62 . CDS 325696 326875 . - 0 ID=Phyra81728;Parent=Phyra81728;rank=3 scaffold_62 . CDS 327116 327887 . - 0 ID=Phyra81728;Parent=Phyra81728;rank=2 scaffold_62 . CDS 329180 329523 . - 0 ID=Phyra81728;Parent=Phyra81728;rank=1 scaffold_62 . repeat_region 325604 325653 . ? . description=dust scaffold_62 . repeat_region 327929 329158 . ? . description=dust scaffold_62 . repeat_region 331646 333208 . ? . description=dust scaffold_62 . exon 325696 326875 . - . ID=Phyra81728.3;Parent=Phyra81728;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_62 . exon 327116 327887 . - . ID=Phyra81728.2;Parent=Phyra81728;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 . exon 329180 329523 . - . ID=Phyra81728.1;Parent=Phyra81728;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 330685 331296 . + . ID=Phyra81729;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_62000111;logic_name=jgi_phyra1 scaffold_62 ensembl transcript 330685 331296 . + . ID=Phyra81729;Parent=Phyra81729;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_62 . CDS 330685 331296 . + 0 ID=Phyra81729;Parent=Phyra81729;rank=1 scaffold_62 . exon 330685 331296 . + . ID=Phyra81729.1;Parent=Phyra81729;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_56 1 334739 scaffold_56 . repeat_region 1199 2304 . ? . description=dust scaffold_56 . repeat_region 3044 3086 . ? . description=trf scaffold_56 . repeat_region 3558 22930 . ? . description=dust scaffold_56 ensembl protein_coding_gene 3370 3558 . - . ID=Phyra50804;biotype=protein_coding;external_name=gwEuk.56.48.1;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 3370 3558 . - . ID=Phyra50804;Parent=Phyra50804;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 3370 3558 . - 0 ID=Phyra50804;Parent=Phyra50804;rank=1 scaffold_56 . exon 3370 3558 . - . ID=Phyra50804.1;Parent=Phyra50804;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 60 2963 . + . ID=Phyra81056;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000001;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 60 2963 . + . ID=Phyra81056;Parent=Phyra81056;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 60 1196 . + 0 ID=Phyra81056;Parent=Phyra81056;rank=1 scaffold_56 . exon 60 1196 . + . ID=Phyra81056.1;Parent=Phyra81056;constitutive=1;rank=1 scaffold_56 . CDS 2388 2963 . + 0 ID=Phyra81056;Parent=Phyra81056;rank=2 scaffold_56 . exon 2388 2963 . + . ID=Phyra81056.2;Parent=Phyra81056;constitutive=1;rank=2 scaffold_56 . repeat_region 3558 22930 . ? . description=dust scaffold_56 . repeat_region 23307 23317 . ? . description=dust scaffold_56 . repeat_region 23402 23409 . ? . description=dust scaffold_56 . repeat_region 23544 23551 . ? . description=dust scaffold_56 . biological_region 24480 24484 0.999 - . logic_name=eponine scaffold_56 . repeat_region 24860 24889 . ? . description=trf scaffold_56 . repeat_region 25254 25351 . ? . description=trf scaffold_56 . repeat_region 25788 25820 . ? . description=trf scaffold_56 . repeat_region 26775 27728 . ? . description=dust scaffold_56 . repeat_region 28059 28067 . ? . description=dust scaffold_56 ensembl protein_coding_gene 23722 25607 . + . ID=Phyra81057;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000002;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 23722 25607 . + . ID=Phyra81057;Parent=Phyra81057;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 23722 24259 . + 0 ID=Phyra81057;Parent=Phyra81057;rank=1 scaffold_56 . exon 23722 24259 . + . ID=Phyra81057.1;Parent=Phyra81057;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . CDS 24290 24393 . + 0 ID=Phyra81057;Parent=Phyra81057;rank=2 scaffold_56 . exon 24290 24393 . + . ID=Phyra81057.2;Parent=Phyra81057;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 24766 25176 . + 0 ID=Phyra81057;Parent=Phyra81057;rank=3 scaffold_56 . exon 24766 25176 . + . ID=Phyra81057.3;Parent=Phyra81057;constitutive=1;rank=3 scaffold_56 . CDS 25266 25607 . + 0 ID=Phyra81057;Parent=Phyra81057;rank=4 scaffold_56 . exon 25266 25607 . + . ID=Phyra81057.4;Parent=Phyra81057;constitutive=1;rank=4 scaffold_56 ensembl protein_coding_gene 28005 29017 . + . ID=Phyra81058;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000003;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 28005 29017 . + . ID=Phyra81058;Parent=Phyra81058;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 28005 28037 . + 0 ID=Phyra81058;Parent=Phyra81058;rank=1 scaffold_56 . exon 28005 28037 . + . ID=Phyra81058.1;Parent=Phyra81058;constitutive=1;rank=1 scaffold_56 . CDS 28116 28287 . + 0 ID=Phyra81058;Parent=Phyra81058;rank=2 scaffold_56 . exon 28116 28287 . + . ID=Phyra81058.2;Parent=Phyra81058;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_56 . CDS 28350 28491 . + 0 ID=Phyra81058;Parent=Phyra81058;rank=3 scaffold_56 . exon 28350 28491 . + . ID=Phyra81058.3;Parent=Phyra81058;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_56 . CDS 28548 28798 . + 0 ID=Phyra81058;Parent=Phyra81058;rank=4 scaffold_56 . exon 28548 28798 . + . ID=Phyra81058.4;Parent=Phyra81058;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_56 . CDS 28896 28929 . + 0 ID=Phyra81058;Parent=Phyra81058;rank=5 scaffold_56 . exon 28896 28929 . + . ID=Phyra81058.5;Parent=Phyra81058;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_56 . CDS 28996 29017 . + 0 ID=Phyra81058;Parent=Phyra81058;rank=6 scaffold_56 . exon 28996 29017 . + . ID=Phyra81058.6;Parent=Phyra81058;constitutive=1;ensembl_phase=2;rank=6 scaffold_56 ensembl protein_coding_gene 29427 31028 . - . ID=Phyra81059;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000004;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 29427 31028 . - . ID=Phyra81059;Parent=Phyra81059;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 29427 31028 . - 0 ID=Phyra81059;Parent=Phyra81059;rank=1 scaffold_56 . exon 29427 31028 . - . ID=Phyra81059.1;Parent=Phyra81059;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 32549 44268 . - . ID=Phyra95883;biotype=protein_coding;external_name=C_scaffold_56000001;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 32549 44268 . - . ID=Phyra95883;Parent=Phyra95883;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 32549 32693 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=22 scaffold_56 . exon 32549 32693 . - . ID=Phyra95883.22;Parent=Phyra95883;constitutive=1;ensembl_end_phase=1;rank=22 scaffold_56 . CDS 32874 33154 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=21 scaffold_56 . exon 32874 33154 . - . ID=Phyra95883.21;Parent=Phyra95883;constitutive=1;ensembl_phase=1;rank=21 scaffold_56 . CDS 33309 33353 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=20 scaffold_56 . exon 33309 33353 . - . ID=Phyra95883.20;Parent=Phyra95883;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=20 scaffold_56 . CDS 33542 33563 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=19 scaffold_56 . exon 33542 33563 . - . ID=Phyra95883.19;Parent=Phyra95883;constitutive=1;ensembl_end_phase=1;rank=19 scaffold_56 . CDS 33720 34329 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=18 scaffold_56 . exon 33720 34329 . - . ID=Phyra95883.18;Parent=Phyra95883;constitutive=1;ensembl_phase=2;rank=18 scaffold_56 . CDS 34383 34414 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=17 scaffold_56 . exon 34383 34414 . - . ID=Phyra95883.17;Parent=Phyra95883;constitutive=1;ensembl_end_phase=2;rank=17 scaffold_56 . CDS 34890 35333 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=16 scaffold_56 . exon 34890 35333 . - . ID=Phyra95883.16;Parent=Phyra95883;constitutive=1;rank=16 scaffold_56 . CDS 35402 35512 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=15 scaffold_56 . exon 35402 35512 . - . ID=Phyra95883.15;Parent=Phyra95883;constitutive=1;rank=15 scaffold_56 . CDS 35565 35756 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=14 scaffold_56 . exon 35565 35756 . - . ID=Phyra95883.14;Parent=Phyra95883;constitutive=1;rank=14 scaffold_56 . CDS 36120 36229 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=13 scaffold_56 . exon 36120 36229 . - . ID=Phyra95883.13;Parent=Phyra95883;constitutive=1;ensembl_phase=1;rank=13 scaffold_56 . CDS 36317 36609 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=12 scaffold_56 . exon 36317 36609 . - . ID=Phyra95883.12;Parent=Phyra95883;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_56 . CDS 36985 37064 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=11 scaffold_56 . exon 36985 37064 . - . ID=Phyra95883.11;Parent=Phyra95883;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_56 . CDS 37248 37435 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=10 scaffold_56 . exon 37248 37435 . - . ID=Phyra95883.10;Parent=Phyra95883;constitutive=1;ensembl_phase=1;rank=10 scaffold_56 . CDS 37547 37682 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=9 scaffold_56 . exon 37547 37682 . - . ID=Phyra95883.9;Parent=Phyra95883;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_56 . CDS 38175 38273 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=8 scaffold_56 . exon 38175 38273 . - . ID=Phyra95883.8;Parent=Phyra95883;constitutive=1;rank=8 scaffold_56 . CDS 38415 38549 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=7 scaffold_56 . exon 38415 38549 . - . ID=Phyra95883.7;Parent=Phyra95883;constitutive=1;rank=7 scaffold_56 . CDS 38796 38861 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=6 scaffold_56 . exon 38796 38861 . - . ID=Phyra95883.6;Parent=Phyra95883;constitutive=1;rank=6 scaffold_56 . CDS 38892 39292 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=5 scaffold_56 . exon 38892 39292 . - . ID=Phyra95883.5;Parent=Phyra95883;constitutive=1;ensembl_phase=1;rank=5 scaffold_56 . CDS 39599 40930 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=4 scaffold_56 . CDS 41102 43423 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=3 scaffold_56 . CDS 43487 43805 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=2 scaffold_56 . CDS 44209 44268 . - 0 ID=Phyra95883;Parent=Phyra95883;rank=1 scaffold_56 . repeat_region 42817 42838 . ? . description=trf scaffold_56 . biological_region 43581 43589 0.999 + . logic_name=eponine scaffold_56 . biological_region 43652 43655 0.999 + . logic_name=eponine scaffold_56 . biological_region 44410 44410 0.999 - . logic_name=eponine scaffold_56 . biological_region 44470 44476 0.999 - . logic_name=eponine scaffold_56 . biological_region 46699 46704 0.999 - . logic_name=eponine scaffold_56 . repeat_region 47031 47071 . ? . description=trf scaffold_56 . biological_region 48287 48291 0.999 + . logic_name=eponine scaffold_56 . repeat_region 48684 48713 . ? . description=trf scaffold_56 ensembl protein_coding_gene 44617 45533 . + . ID=Phyra50807;biotype=protein_coding;external_name=gwEuk.56.51.1;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 44617 45533 . + . ID=Phyra50807;Parent=Phyra50807;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 44617 45351 . + 0 ID=Phyra50807;Parent=Phyra50807;rank=1 scaffold_56 . exon 44617 45351 . + . ID=Phyra50807.1;Parent=Phyra50807;constitutive=1;rank=1 scaffold_56 . CDS 45426 45533 . + 0 ID=Phyra50807;Parent=Phyra50807;rank=2 scaffold_56 . exon 45426 45533 . + . ID=Phyra50807.2;Parent=Phyra50807;constitutive=1;rank=2 scaffold_56 ensembl protein_coding_gene 46909 48042 . - . ID=Phyra71862;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_56000002;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 46909 48042 . - . ID=Phyra71862;Parent=Phyra71862;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 46909 46953 . - 0 ID=Phyra71862;Parent=Phyra71862;rank=2 scaffold_56 . exon 46909 46953 . - . ID=Phyra71862.2;Parent=Phyra71862;constitutive=1;rank=2 scaffold_56 . CDS 46981 48042 . - 0 ID=Phyra71862;Parent=Phyra71862;rank=1 scaffold_56 . exon 46981 48042 . - . ID=Phyra71862.1;Parent=Phyra71862;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 45639 46771 . - . ID=Phyra81062;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000007;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 45639 46771 . - . ID=Phyra81062;Parent=Phyra81062;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 45639 46138 . - 0 ID=Phyra81062;Parent=Phyra81062;rank=2 scaffold_56 . exon 45639 46138 . - . ID=Phyra81062.2;Parent=Phyra81062;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_56 . CDS 46199 46771 . - 0 ID=Phyra81062;Parent=Phyra81062;rank=1 scaffold_56 . exon 46199 46771 . - . ID=Phyra81062.1;Parent=Phyra81062;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 48228 53032 . + . ID=Phyra81064;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000009;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 48228 53032 . + . ID=Phyra81064;Parent=Phyra81064;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 48228 48482 . + 0 ID=Phyra81064;Parent=Phyra81064;rank=1 scaffold_56 . exon 48228 48482 . + . ID=Phyra81064.1;Parent=Phyra81064;constitutive=1;rank=1 scaffold_56 . CDS 48553 48684 . + 0 ID=Phyra81064;Parent=Phyra81064;rank=2 scaffold_56 . exon 48553 48684 . + . ID=Phyra81064.2;Parent=Phyra81064;constitutive=1;rank=2 scaffold_56 . CDS 48764 48972 . + 0 ID=Phyra81064;Parent=Phyra81064;rank=3 scaffold_56 . exon 48764 48972 . + . ID=Phyra81064.3;Parent=Phyra81064;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_56 . CDS 49122 49394 . + 0 ID=Phyra81064;Parent=Phyra81064;rank=4 scaffold_56 . exon 49122 49394 . + . ID=Phyra81064.4;Parent=Phyra81064;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_56 . CDS 50037 51007 . + 0 ID=Phyra81064;Parent=Phyra81064;rank=5 scaffold_56 . CDS 51069 53032 . + 0 ID=Phyra81064;Parent=Phyra81064;rank=6 scaffold_56 . exon 39599 40930 . - . ID=Phyra95883.4;Parent=Phyra95883;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_56 . exon 41102 43423 . - . ID=Phyra95883.3;Parent=Phyra95883;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_56 . exon 43487 43805 . - . ID=Phyra95883.2;Parent=Phyra95883;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_56 . exon 44209 44268 . - . ID=Phyra95883.1;Parent=Phyra95883;constitutive=1;rank=1 scaffold_56 . repeat_region 57490 57513 . ? . description=dust scaffold_56 . exon 50037 51007 . + . ID=Phyra81064.5;Parent=Phyra81064;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_56 . exon 51069 53032 . + . ID=Phyra81064.6;Parent=Phyra81064;constitutive=1;ensembl_phase=1;rank=6 scaffold_56 ensembl protein_coding_gene 53628 55470 . + . ID=Phyra81065;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000010;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 53628 55470 . + . ID=Phyra81065;Parent=Phyra81065;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 53628 55436 . + 0 ID=Phyra81065;Parent=Phyra81065;rank=1 scaffold_56 . exon 53628 55436 . + . ID=Phyra81065.1;Parent=Phyra81065;constitutive=1;rank=1 scaffold_56 . CDS 55465 55470 . + 0 ID=Phyra81065;Parent=Phyra81065;rank=2 scaffold_56 . exon 55465 55470 . + . ID=Phyra81065.2;Parent=Phyra81065;constitutive=1;rank=2 scaffold_56 ensembl protein_coding_gene 55713 57543 . - . ID=Phyra81066;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000011;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 55713 57543 . - . ID=Phyra81066;Parent=Phyra81066;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 55713 56778 . - 0 ID=Phyra81066;Parent=Phyra81066;rank=2 scaffold_56 . exon 55713 56778 . - . ID=Phyra81066.2;Parent=Phyra81066;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 . CDS 56849 57543 . - 0 ID=Phyra81066;Parent=Phyra81066;rank=1 scaffold_56 . exon 56849 57543 . - . ID=Phyra81066.1;Parent=Phyra81066;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 ensembl protein_coding_gene 57843 61347 . + . ID=Phyra81067;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000012;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 57843 61347 . + . ID=Phyra81067;Parent=Phyra81067;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 57843 58031 . + 0 ID=Phyra81067;Parent=Phyra81067;rank=1 scaffold_56 . exon 57843 58031 . + . ID=Phyra81067.1;Parent=Phyra81067;constitutive=1;rank=1 scaffold_56 . CDS 58075 58310 . + 0 ID=Phyra81067;Parent=Phyra81067;rank=2 scaffold_56 . exon 58075 58310 . + . ID=Phyra81067.2;Parent=Phyra81067;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_56 . CDS 58358 58439 . + 0 ID=Phyra81067;Parent=Phyra81067;rank=3 scaffold_56 . exon 58358 58439 . + . ID=Phyra81067.3;Parent=Phyra81067;constitutive=1;ensembl_phase=2;rank=3 scaffold_56 . CDS 58481 58663 . + 0 ID=Phyra81067;Parent=Phyra81067;rank=4 scaffold_56 . exon 58481 58663 . + . ID=Phyra81067.4;Parent=Phyra81067;constitutive=1;rank=4 scaffold_56 . CDS 58683 58907 . + 0 ID=Phyra81067;Parent=Phyra81067;rank=5 scaffold_56 . exon 58683 58907 . + . ID=Phyra81067.5;Parent=Phyra81067;constitutive=1;rank=5 scaffold_56 . CDS 59240 59344 . + 0 ID=Phyra81067;Parent=Phyra81067;rank=6 scaffold_56 . CDS 59531 59640 . + 0 ID=Phyra81067;Parent=Phyra81067;rank=7 scaffold_56 . CDS 59749 59880 . + 0 ID=Phyra81067;Parent=Phyra81067;rank=8 scaffold_56 . CDS 60210 60534 . + 0 ID=Phyra81067;Parent=Phyra81067;rank=9 scaffold_56 . CDS 60604 61347 . + 0 ID=Phyra81067;Parent=Phyra81067;rank=10 scaffold_56 . repeat_region 60287 60340 . ? . description=trf scaffold_56 . repeat_region 60304 60380 . ? . description=trf scaffold_56 . biological_region 62236 62236 0.999 + . logic_name=eponine scaffold_56 . repeat_region 66582 66633 . ? . description=trf scaffold_56 . biological_region 66899 66902 0.999 + . logic_name=eponine scaffold_56 . biological_region 66939 66943 0.999 - . logic_name=eponine scaffold_56 . biological_region 66943 66946 0.999 + . logic_name=eponine scaffold_56 . biological_region 68315 68318 0.999 - . logic_name=eponine scaffold_56 ensembl protein_coding_gene 64147 64533 . - . ID=Phyra71863;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_56000003;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 64147 64533 . - . ID=Phyra71863;Parent=Phyra71863;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 64147 64533 . - 0 ID=Phyra71863;Parent=Phyra71863;rank=1 scaffold_56 . exon 64147 64533 . - . ID=Phyra71863.1;Parent=Phyra71863;constitutive=1;rank=1 scaffold_56 . exon 59240 59344 . + . ID=Phyra81067.6;Parent=Phyra81067;constitutive=1;rank=6 scaffold_56 . exon 59531 59640 . + . ID=Phyra81067.7;Parent=Phyra81067;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_56 . exon 59749 59880 . + . ID=Phyra81067.8;Parent=Phyra81067;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_56 . exon 60210 60534 . + . ID=Phyra81067.9;Parent=Phyra81067;constitutive=1;ensembl_phase=2;rank=9 scaffold_56 . exon 60604 61347 . + . ID=Phyra81067.10;Parent=Phyra81067;constitutive=1;rank=10 scaffold_56 ensembl protein_coding_gene 63076 63911 . + . ID=Phyra81068;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000013;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 63076 63911 . + . ID=Phyra81068;Parent=Phyra81068;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 63076 63248 . + 0 ID=Phyra81068;Parent=Phyra81068;rank=1 scaffold_56 . exon 63076 63248 . + . ID=Phyra81068.1;Parent=Phyra81068;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . CDS 63324 63529 . + 0 ID=Phyra81068;Parent=Phyra81068;rank=2 scaffold_56 . exon 63324 63529 . + . ID=Phyra81068.2;Parent=Phyra81068;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_56 . CDS 63598 63911 . + 0 ID=Phyra81068;Parent=Phyra81068;rank=3 scaffold_56 . exon 63598 63911 . + . ID=Phyra81068.3;Parent=Phyra81068;constitutive=1;ensembl_phase=1;rank=3 scaffold_56 ensembl protein_coding_gene 64792 66558 . + . ID=Phyra81070;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000015;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 64792 66558 . + . ID=Phyra81070;Parent=Phyra81070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 64792 66558 . + 0 ID=Phyra81070;Parent=Phyra81070;rank=1 scaffold_56 . exon 64792 66558 . + . ID=Phyra81070.1;Parent=Phyra81070;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 66836 68346 . + . ID=Phyra81071;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000016;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 66836 68346 . + . ID=Phyra81071;Parent=Phyra81071;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 66836 67291 . + 0 ID=Phyra81071;Parent=Phyra81071;rank=1 scaffold_56 . exon 66836 67291 . + . ID=Phyra81071.1;Parent=Phyra81071;constitutive=1;rank=1 scaffold_56 . CDS 67352 67401 . + 0 ID=Phyra81071;Parent=Phyra81071;rank=2 scaffold_56 . exon 67352 67401 . + . ID=Phyra81071.2;Parent=Phyra81071;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_56 . CDS 67470 67729 . + 0 ID=Phyra81071;Parent=Phyra81071;rank=3 scaffold_56 . exon 67470 67729 . + . ID=Phyra81071.3;Parent=Phyra81071;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_56 . CDS 67799 68346 . + 0 ID=Phyra81071;Parent=Phyra81071;rank=4 scaffold_56 . exon 67799 68346 . + . ID=Phyra81071.4;Parent=Phyra81071;constitutive=1;ensembl_phase=1;rank=4 scaffold_56 ensembl protein_coding_gene 68514 71592 . - . ID=Phyra95886;biotype=protein_coding;external_name=C_scaffold_56000004;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 68514 71592 . - . ID=Phyra95886;Parent=Phyra95886;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 68514 69190 . - 0 ID=Phyra95886;Parent=Phyra95886;rank=7 scaffold_56 . exon 68514 69190 . - . ID=Phyra95886.7;Parent=Phyra95886;constitutive=1;ensembl_phase=1;rank=7 scaffold_56 . CDS 69386 69599 . - 0 ID=Phyra95886;Parent=Phyra95886;rank=6 scaffold_56 . CDS 69669 69933 . - 0 ID=Phyra95886;Parent=Phyra95886;rank=5 scaffold_56 . CDS 70013 70626 . - 0 ID=Phyra95886;Parent=Phyra95886;rank=4 scaffold_56 . CDS 70700 70956 . - 0 ID=Phyra95886;Parent=Phyra95886;rank=3 scaffold_56 . CDS 71022 71372 . - 0 ID=Phyra95886;Parent=Phyra95886;rank=2 scaffold_56 . CDS 71406 71592 . - 0 ID=Phyra95886;Parent=Phyra95886;rank=1 scaffold_56 ensembl protein_coding_gene 73525 74318 . - . ID=Phyra71864;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_56000004;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 73525 74318 . - . ID=Phyra71864;Parent=Phyra71864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 73525 73561 . - 0 ID=Phyra71864;Parent=Phyra71864;rank=3 scaffold_56 . exon 73525 73561 . - . ID=Phyra71864.3;Parent=Phyra71864;constitutive=1;ensembl_phase=2;rank=3 scaffold_56 . CDS 73634 74159 . - 0 ID=Phyra71864;Parent=Phyra71864;rank=2 scaffold_56 . exon 73634 74159 . - . ID=Phyra71864.2;Parent=Phyra71864;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_56 . CDS 74228 74318 . - 0 ID=Phyra71864;Parent=Phyra71864;rank=1 scaffold_56 . exon 74228 74318 . - . ID=Phyra71864.1;Parent=Phyra71864;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 74606 75959 . + . ID=Phyra81075;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000020;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 74606 75959 . + . ID=Phyra81075;Parent=Phyra81075;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 74606 74737 . + 0 ID=Phyra81075;Parent=Phyra81075;rank=1 scaffold_56 . exon 74606 74737 . + . ID=Phyra81075.1;Parent=Phyra81075;constitutive=1;rank=1 scaffold_56 . CDS 74820 75527 . + 0 ID=Phyra81075;Parent=Phyra81075;rank=2 scaffold_56 . exon 74820 75527 . + . ID=Phyra81075.2;Parent=Phyra81075;constitutive=1;rank=2 scaffold_56 . CDS 75600 75959 . + 0 ID=Phyra81075;Parent=Phyra81075;rank=3 scaffold_56 . exon 75600 75959 . + . ID=Phyra81075.3;Parent=Phyra81075;constitutive=1;rank=3 scaffold_56 . exon 69386 69599 . - . ID=Phyra95886.6;Parent=Phyra95886;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_56 . exon 69669 69933 . - . ID=Phyra95886.5;Parent=Phyra95886;constitutive=1;ensembl_phase=2;rank=5 scaffold_56 . exon 70013 70626 . - . ID=Phyra95886.4;Parent=Phyra95886;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_56 . exon 70700 70956 . - . ID=Phyra95886.3;Parent=Phyra95886;constitutive=1;ensembl_phase=1;rank=3 scaffold_56 . exon 71022 71372 . - . ID=Phyra95886.2;Parent=Phyra95886;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_56 . exon 71406 71592 . - . ID=Phyra95886.1;Parent=Phyra95886;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 71773 73224 . + . ID=Phyra95887;biotype=protein_coding;external_name=C_scaffold_56000005;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 71773 73224 . + . ID=Phyra95887;Parent=Phyra95887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 71773 71949 . + 0 ID=Phyra95887;Parent=Phyra95887;rank=1 scaffold_56 . exon 71773 71949 . + . ID=Phyra95887.1;Parent=Phyra95887;constitutive=1;rank=1 scaffold_56 . CDS 72015 72258 . + 0 ID=Phyra95887;Parent=Phyra95887;rank=2 scaffold_56 . exon 72015 72258 . + . ID=Phyra95887.2;Parent=Phyra95887;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_56 . CDS 72322 72479 . + 0 ID=Phyra95887;Parent=Phyra95887;rank=3 scaffold_56 . exon 72322 72479 . + . ID=Phyra95887.3;Parent=Phyra95887;constitutive=1;ensembl_phase=1;rank=3 scaffold_56 . CDS 72547 72673 . + 0 ID=Phyra95887;Parent=Phyra95887;rank=4 scaffold_56 . exon 72547 72673 . + . ID=Phyra95887.4;Parent=Phyra95887;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_56 . CDS 72739 72842 . + 0 ID=Phyra95887;Parent=Phyra95887;rank=5 scaffold_56 . exon 72739 72842 . + . ID=Phyra95887.5;Parent=Phyra95887;constitutive=1;ensembl_phase=1;rank=5 scaffold_56 . CDS 72916 73224 . + 0 ID=Phyra95887;Parent=Phyra95887;rank=6 scaffold_56 . exon 72916 73224 . + . ID=Phyra95887.6;Parent=Phyra95887;constitutive=1;rank=6 scaffold_56 ensembl protein_coding_gene 76040 79534 . - . ID=Phyra95889;biotype=protein_coding;external_name=C_scaffold_56000007;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 76040 79534 . - . ID=Phyra95889;Parent=Phyra95889;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 76040 76584 . - 0 ID=Phyra95889;Parent=Phyra95889;rank=5 scaffold_56 . exon 76040 76584 . - . ID=Phyra95889.5;Parent=Phyra95889;constitutive=1;ensembl_phase=1;rank=5 scaffold_56 . CDS 76663 77164 . - 0 ID=Phyra95889;Parent=Phyra95889;rank=4 scaffold_56 . exon 76663 77164 . - . ID=Phyra95889.4;Parent=Phyra95889;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_56 . CDS 77285 78568 . - 0 ID=Phyra95889;Parent=Phyra95889;rank=3 scaffold_56 . exon 77285 78568 . - . ID=Phyra95889.3;Parent=Phyra95889;constitutive=1;rank=3 scaffold_56 . CDS 78638 78774 . - 0 ID=Phyra95889;Parent=Phyra95889;rank=2 scaffold_56 . exon 78638 78774 . - . ID=Phyra95889.2;Parent=Phyra95889;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 78877 79534 . - 0 ID=Phyra95889;Parent=Phyra95889;rank=1 scaffold_56 . biological_region 79835 79838 0.999 - . logic_name=eponine scaffold_56 . biological_region 82449 82453 0.999 - . logic_name=eponine scaffold_56 . biological_region 83383 83386 0.999 + . logic_name=eponine scaffold_56 . biological_region 83991 83994 0.999 + . logic_name=eponine scaffold_56 . biological_region 86658 86661 0.999 - . logic_name=eponine scaffold_56 . biological_region 87266 87269 0.999 - . logic_name=eponine scaffold_56 ensembl protein_coding_gene 80196 83099 . + . ID=Phyra50827;biotype=protein_coding;external_name=gwEuk.56.71.1;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 80196 83099 . + . ID=Phyra50827;Parent=Phyra50827;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 80196 80276 . + 0 ID=Phyra50827;Parent=Phyra50827;rank=1 scaffold_56 . exon 80196 80276 . + . ID=Phyra50827.1;Parent=Phyra50827;constitutive=1;rank=1 scaffold_56 . CDS 80340 80450 . + 0 ID=Phyra50827;Parent=Phyra50827;rank=2 scaffold_56 . exon 80340 80450 . + . ID=Phyra50827.2;Parent=Phyra50827;constitutive=1;rank=2 scaffold_56 . CDS 80515 81173 . + 0 ID=Phyra50827;Parent=Phyra50827;rank=3 scaffold_56 . exon 80515 81173 . + . ID=Phyra50827.3;Parent=Phyra50827;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_56 . CDS 81250 82663 . + 0 ID=Phyra50827;Parent=Phyra50827;rank=4 scaffold_56 . exon 81250 82663 . + . ID=Phyra50827.4;Parent=Phyra50827;constitutive=1;ensembl_phase=2;rank=4 scaffold_56 . CDS 82743 83099 . + 0 ID=Phyra50827;Parent=Phyra50827;rank=5 scaffold_56 . exon 82743 83099 . + . ID=Phyra50827.5;Parent=Phyra50827;constitutive=1;rank=5 scaffold_56 ensembl protein_coding_gene 86390 87466 . + . ID=Phyra50837;biotype=protein_coding;external_name=gwEuk.56.81.1;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 86390 87466 . + . ID=Phyra50837;Parent=Phyra50837;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 86390 87193 . + 0 ID=Phyra50837;Parent=Phyra50837;rank=1 scaffold_56 . exon 86390 87193 . + . ID=Phyra50837.1;Parent=Phyra50837;constitutive=1;rank=1 scaffold_56 . CDS 87251 87466 . + 0 ID=Phyra50837;Parent=Phyra50837;rank=2 scaffold_56 . exon 87251 87466 . + . ID=Phyra50837.2;Parent=Phyra50837;constitutive=1;rank=2 scaffold_56 ensembl protein_coding_gene 83226 84348 . - . ID=Phyra81079;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000024;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 83226 84348 . - . ID=Phyra81079;Parent=Phyra81079;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 83226 84348 . - 0 ID=Phyra81079;Parent=Phyra81079;rank=1 scaffold_56 . exon 83226 84348 . - . ID=Phyra81079.1;Parent=Phyra81079;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 84944 85549 . + . ID=Phyra81080;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000025;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 84944 85549 . + . ID=Phyra81080;Parent=Phyra81080;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 84944 85549 . + 0 ID=Phyra81080;Parent=Phyra81080;rank=1 scaffold_56 . exon 84944 85549 . + . ID=Phyra81080.1;Parent=Phyra81080;constitutive=1;rank=1 scaffold_56 . exon 78877 79534 . - . ID=Phyra95889.1;Parent=Phyra95889;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . repeat_region 89848 89867 . ? . description=trf scaffold_56 . repeat_region 90513 90603 . ? . description=trf scaffold_56 . repeat_region 91007 91029 . ? . description=trf scaffold_56 . repeat_region 91007 91029 . ? . description=dust scaffold_56 . repeat_region 93426 93436 . ? . description=dust scaffold_56 . repeat_region 93544 93665 . ? . description=trf scaffold_56 . repeat_region 93828 93867 . ? . description=trf scaffold_56 . repeat_region 94830 94852 . ? . description=trf scaffold_56 . repeat_region 96547 96557 . ? . description=dust scaffold_56 ensembl protein_coding_gene 89540 90652 . - . ID=Phyra81082;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000027;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 89540 90652 . - . ID=Phyra81082;Parent=Phyra81082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 89540 90652 . - 0 ID=Phyra81082;Parent=Phyra81082;rank=1 scaffold_56 . exon 89540 90652 . - . ID=Phyra81082.1;Parent=Phyra81082;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 93697 94746 . + . ID=Phyra81083;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000028;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 93697 94746 . + . ID=Phyra81083;Parent=Phyra81083;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 93697 93759 . + 0 ID=Phyra81083;Parent=Phyra81083;rank=1 scaffold_56 . exon 93697 93759 . + . ID=Phyra81083.1;Parent=Phyra81083;constitutive=1;rank=1 scaffold_56 . CDS 93807 93917 . + 0 ID=Phyra81083;Parent=Phyra81083;rank=2 scaffold_56 . exon 93807 93917 . + . ID=Phyra81083.2;Parent=Phyra81083;constitutive=1;rank=2 scaffold_56 . CDS 94003 94173 . + 0 ID=Phyra81083;Parent=Phyra81083;rank=3 scaffold_56 . exon 94003 94173 . + . ID=Phyra81083.3;Parent=Phyra81083;constitutive=1;rank=3 scaffold_56 . CDS 94248 94279 . + 0 ID=Phyra81083;Parent=Phyra81083;rank=4 scaffold_56 . exon 94248 94279 . + . ID=Phyra81083.4;Parent=Phyra81083;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_56 . CDS 94340 94384 . + 0 ID=Phyra81083;Parent=Phyra81083;rank=5 scaffold_56 . exon 94340 94384 . + . ID=Phyra81083.5;Parent=Phyra81083;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_56 . CDS 94464 94596 . + 0 ID=Phyra81083;Parent=Phyra81083;rank=6 scaffold_56 . exon 94464 94596 . + . ID=Phyra81083.6;Parent=Phyra81083;constitutive=1;ensembl_phase=2;rank=6 scaffold_56 . CDS 94738 94746 . + 0 ID=Phyra81083;Parent=Phyra81083;rank=7 scaffold_56 . exon 94738 94746 . + . ID=Phyra81083.7;Parent=Phyra81083;constitutive=1;rank=7 scaffold_56 ensembl protein_coding_gene 95027 98639 . - . ID=Phyra95892;biotype=protein_coding;external_name=C_scaffold_56000010;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 95027 98639 . - . ID=Phyra95892;Parent=Phyra95892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 95027 95346 . - 0 ID=Phyra95892;Parent=Phyra95892;rank=14 scaffold_56 . exon 95027 95346 . - . ID=Phyra95892.14;Parent=Phyra95892;constitutive=1;ensembl_phase=1;rank=14 scaffold_56 . CDS 95418 95624 . - 0 ID=Phyra95892;Parent=Phyra95892;rank=13 scaffold_56 . exon 95418 95624 . - . ID=Phyra95892.13;Parent=Phyra95892;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_56 . CDS 95688 95884 . - 0 ID=Phyra95892;Parent=Phyra95892;rank=12 scaffold_56 . exon 95688 95884 . - . ID=Phyra95892.12;Parent=Phyra95892;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_56 . CDS 95955 96152 . - 0 ID=Phyra95892;Parent=Phyra95892;rank=11 scaffold_56 . exon 95955 96152 . - . ID=Phyra95892.11;Parent=Phyra95892;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_56 . CDS 96213 96357 . - 0 ID=Phyra95892;Parent=Phyra95892;rank=10 scaffold_56 . exon 96213 96357 . - . ID=Phyra95892.10;Parent=Phyra95892;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_56 . CDS 96419 96515 . - 0 ID=Phyra95892;Parent=Phyra95892;rank=9 scaffold_56 . exon 96419 96515 . - . ID=Phyra95892.9;Parent=Phyra95892;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_56 . CDS 96578 97018 . - 0 ID=Phyra95892;Parent=Phyra95892;rank=8 scaffold_56 . exon 96578 97018 . - . ID=Phyra95892.8;Parent=Phyra95892;constitutive=1;rank=8 scaffold_56 . CDS 97165 97407 . - 0 ID=Phyra95892;Parent=Phyra95892;rank=7 scaffold_56 . exon 97165 97407 . - . ID=Phyra95892.7;Parent=Phyra95892;constitutive=1;rank=7 scaffold_56 . CDS 97444 97551 . - 0 ID=Phyra95892;Parent=Phyra95892;rank=6 scaffold_56 . exon 97444 97551 . - . ID=Phyra95892.6;Parent=Phyra95892;constitutive=1;rank=6 scaffold_56 . CDS 97599 97708 . - 0 ID=Phyra95892;Parent=Phyra95892;rank=5 scaffold_56 . exon 97599 97708 . - . ID=Phyra95892.5;Parent=Phyra95892;constitutive=1;ensembl_phase=1;rank=5 scaffold_56 . CDS 97778 97928 . - 0 ID=Phyra95892;Parent=Phyra95892;rank=4 scaffold_56 . exon 97778 97928 . - . ID=Phyra95892.4;Parent=Phyra95892;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_56 . CDS 98051 98175 . - 0 ID=Phyra95892;Parent=Phyra95892;rank=3 scaffold_56 . exon 98051 98175 . - . ID=Phyra95892.3;Parent=Phyra95892;constitutive=1;ensembl_phase=1;rank=3 scaffold_56 . CDS 98377 98395 . - 0 ID=Phyra95892;Parent=Phyra95892;rank=2 scaffold_56 . exon 98377 98395 . - . ID=Phyra95892.2;Parent=Phyra95892;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_56 . CDS 98476 98637 . - 0 ID=Phyra95892;Parent=Phyra95892;rank=1 scaffold_56 . biological_region 99156 99158 0.999 + . logic_name=eponine scaffold_56 . biological_region 101802 101802 0.999 - . logic_name=eponine scaffold_56 ensembl protein_coding_gene 100665 109269 . - . ID=Phyra81088;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000033;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 100665 109269 . - . ID=Phyra81088;Parent=Phyra81088;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 100665 100692 . - 0 ID=Phyra81088;Parent=Phyra81088;rank=6 scaffold_56 . exon 100665 100692 . - . ID=Phyra81088.6;Parent=Phyra81088;constitutive=1;ensembl_phase=2;rank=6 scaffold_56 . CDS 100719 101856 . - 0 ID=Phyra81088;Parent=Phyra81088;rank=5 scaffold_56 . exon 100719 101856 . - . ID=Phyra81088.5;Parent=Phyra81088;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_56 . CDS 101984 101986 . - 0 ID=Phyra81088;Parent=Phyra81088;rank=4 scaffold_56 . exon 101984 101986 . - . ID=Phyra81088.4;Parent=Phyra81088;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_56 . CDS 102083 108869 . - 0 ID=Phyra81088;Parent=Phyra81088;rank=3 scaffold_56 . exon 102083 108869 . - . ID=Phyra81088.3;Parent=Phyra81088;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_56 . CDS 108943 109104 . - 0 ID=Phyra81088;Parent=Phyra81088;rank=2 scaffold_56 . CDS 109171 109269 . - 0 ID=Phyra81088;Parent=Phyra81088;rank=1 scaffold_56 . exon 98476 98639 . - . ID=Phyra95892.1;Parent=Phyra95892;constitutive=1;ensembl_phase=-1;rank=1 scaffold_56 ensembl protein_coding_gene 98699 99471 . - . ID=Phyra95894;biotype=protein_coding;external_name=C_scaffold_56000012;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 98699 99471 . - . ID=Phyra95894;Parent=Phyra95894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 98699 99252 . - 0 ID=Phyra95894;Parent=Phyra95894;rank=2 scaffold_56 . exon 98699 99252 . - . ID=Phyra95894.2;Parent=Phyra95894;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_56 . CDS 99307 99471 . - 0 ID=Phyra95894;Parent=Phyra95894;rank=1 scaffold_56 . exon 99307 99471 . - . ID=Phyra95894.1;Parent=Phyra95894;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 99645 100470 . + . ID=Phyra95895;biotype=protein_coding;external_name=C_scaffold_56000013;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 99645 100470 . + . ID=Phyra95895;Parent=Phyra95895;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 99645 99661 . + 0 ID=Phyra95895;Parent=Phyra95895;rank=1 scaffold_56 . exon 99645 99661 . + . ID=Phyra95895.1;Parent=Phyra95895;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . CDS 99744 99840 . + 0 ID=Phyra95895;Parent=Phyra95895;rank=2 scaffold_56 . exon 99744 99840 . + . ID=Phyra95895.2;Parent=Phyra95895;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 . CDS 99895 100125 . + 0 ID=Phyra95895;Parent=Phyra95895;rank=3 scaffold_56 . exon 99895 100125 . + . ID=Phyra95895.3;Parent=Phyra95895;constitutive=1;rank=3 scaffold_56 . CDS 100168 100470 . + 0 ID=Phyra95895;Parent=Phyra95895;rank=4 scaffold_56 . exon 100168 100470 . + . ID=Phyra95895.4;Parent=Phyra95895;constitutive=1;rank=4 scaffold_56 . repeat_region 116014 116185 . ? . description=trf scaffold_56 . repeat_region 117365 117406 . ? . description=trf scaffold_56 ensembl protein_coding_gene 109692 111282 . + . ID=Phyra50840;biotype=protein_coding;external_name=gwEuk.56.84.1;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 109692 111282 . + . ID=Phyra50840;Parent=Phyra50840;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 109692 109736 . + 0 ID=Phyra50840;Parent=Phyra50840;rank=1 scaffold_56 . exon 109692 109736 . + . ID=Phyra50840.1;Parent=Phyra50840;constitutive=1;rank=1 scaffold_56 . CDS 109838 110002 . + 0 ID=Phyra50840;Parent=Phyra50840;rank=2 scaffold_56 . exon 109838 110002 . + . ID=Phyra50840.2;Parent=Phyra50840;constitutive=1;rank=2 scaffold_56 . CDS 110136 110192 . + 0 ID=Phyra50840;Parent=Phyra50840;rank=3 scaffold_56 . exon 110136 110192 . + . ID=Phyra50840.3;Parent=Phyra50840;constitutive=1;rank=3 scaffold_56 . CDS 110282 110383 . + 0 ID=Phyra50840;Parent=Phyra50840;rank=4 scaffold_56 . exon 110282 110383 . + . ID=Phyra50840.4;Parent=Phyra50840;constitutive=1;rank=4 scaffold_56 . CDS 110453 110496 . + 0 ID=Phyra50840;Parent=Phyra50840;rank=5 scaffold_56 . exon 110453 110496 . + . ID=Phyra50840.5;Parent=Phyra50840;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_56 . CDS 110576 110635 . + 0 ID=Phyra50840;Parent=Phyra50840;rank=6 scaffold_56 . exon 110576 110635 . + . ID=Phyra50840.6;Parent=Phyra50840;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_56 . CDS 110718 110832 . + 0 ID=Phyra50840;Parent=Phyra50840;rank=7 scaffold_56 . exon 110718 110832 . + . ID=Phyra50840.7;Parent=Phyra50840;constitutive=1;ensembl_phase=2;rank=7 scaffold_56 . CDS 110903 110959 . + 0 ID=Phyra50840;Parent=Phyra50840;rank=8 scaffold_56 . exon 110903 110959 . + . ID=Phyra50840.8;Parent=Phyra50840;constitutive=1;rank=8 scaffold_56 . CDS 111022 111165 . + 0 ID=Phyra50840;Parent=Phyra50840;rank=9 scaffold_56 . exon 111022 111165 . + . ID=Phyra50840.9;Parent=Phyra50840;constitutive=1;rank=9 scaffold_56 . CDS 111226 111282 . + 0 ID=Phyra50840;Parent=Phyra50840;rank=10 scaffold_56 . exon 111226 111282 . + . ID=Phyra50840.10;Parent=Phyra50840;constitutive=1;rank=10 scaffold_56 . exon 108943 109104 . - . ID=Phyra81088.2;Parent=Phyra81088;constitutive=1;rank=2 scaffold_56 . exon 109171 109269 . - . ID=Phyra81088.1;Parent=Phyra81088;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 112157 113431 . + . ID=Phyra81090;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000035;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 112157 113431 . + . ID=Phyra81090;Parent=Phyra81090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 112157 112294 . + 0 ID=Phyra81090;Parent=Phyra81090;rank=1 scaffold_56 . exon 112157 112294 . + . ID=Phyra81090.1;Parent=Phyra81090;constitutive=1;rank=1 scaffold_56 . CDS 112362 112444 . + 0 ID=Phyra81090;Parent=Phyra81090;rank=2 scaffold_56 . exon 112362 112444 . + . ID=Phyra81090.2;Parent=Phyra81090;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_56 . CDS 112516 112598 . + 0 ID=Phyra81090;Parent=Phyra81090;rank=3 scaffold_56 . exon 112516 112598 . + . ID=Phyra81090.3;Parent=Phyra81090;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_56 . CDS 112669 112778 . + 0 ID=Phyra81090;Parent=Phyra81090;rank=4 scaffold_56 . exon 112669 112778 . + . ID=Phyra81090.4;Parent=Phyra81090;constitutive=1;ensembl_phase=1;rank=4 scaffold_56 . CDS 112856 112971 . + 0 ID=Phyra81090;Parent=Phyra81090;rank=5 scaffold_56 . exon 112856 112971 . + . ID=Phyra81090.5;Parent=Phyra81090;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_56 . CDS 113055 113187 . + 0 ID=Phyra81090;Parent=Phyra81090;rank=6 scaffold_56 . exon 113055 113187 . + . ID=Phyra81090.6;Parent=Phyra81090;constitutive=1;ensembl_phase=2;rank=6 scaffold_56 . CDS 113396 113431 . + 0 ID=Phyra81090;Parent=Phyra81090;rank=7 scaffold_56 . exon 113396 113431 . + . ID=Phyra81090.7;Parent=Phyra81090;constitutive=1;rank=7 scaffold_56 . biological_region 119056 119059 0.999 - . logic_name=eponine scaffold_56 . biological_region 119835 119839 0.999 + . logic_name=eponine scaffold_56 . biological_region 119842 119843 0.999 - . logic_name=eponine scaffold_56 . biological_region 119882 119885 0.999 + . logic_name=eponine scaffold_56 . biological_region 119897 119900 0.999 + . logic_name=eponine scaffold_56 . biological_region 119898 119901 0.999 - . logic_name=eponine scaffold_56 . repeat_region 122438 122456 . ? . description=dust scaffold_56 . biological_region 122489 122492 0.999 - . logic_name=eponine scaffold_56 . repeat_region 126185 126629 . ? . description=dust scaffold_56 . biological_region 127147 127148 0.999 - . logic_name=eponine scaffold_56 . biological_region 127308 127311 0.999 + . logic_name=eponine scaffold_56 . repeat_region 127844 128849 . - . description=GypsyPi-1c_I-int scaffold_56 ensembl protein_coding_gene 118281 118919 . - . ID=Phyra81091;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000036;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 118281 118919 . - . ID=Phyra81091;Parent=Phyra81091;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 118281 118919 . - 0 ID=Phyra81091;Parent=Phyra81091;rank=1 scaffold_56 . exon 118281 118919 . - . ID=Phyra81091.1;Parent=Phyra81091;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 119211 121412 . + . ID=Phyra81092;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000037;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 119211 121412 . + . ID=Phyra81092;Parent=Phyra81092;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 119211 119273 . + 0 ID=Phyra81092;Parent=Phyra81092;rank=1 scaffold_56 . exon 119211 119273 . + . ID=Phyra81092.1;Parent=Phyra81092;constitutive=1;rank=1 scaffold_56 . CDS 119453 119524 . + 0 ID=Phyra81092;Parent=Phyra81092;rank=2 scaffold_56 . exon 119453 119524 . + . ID=Phyra81092.2;Parent=Phyra81092;constitutive=1;rank=2 scaffold_56 . CDS 119596 120741 . + 0 ID=Phyra81092;Parent=Phyra81092;rank=3 scaffold_56 . exon 119596 120741 . + . ID=Phyra81092.3;Parent=Phyra81092;constitutive=1;rank=3 scaffold_56 . CDS 120824 120933 . + 0 ID=Phyra81092;Parent=Phyra81092;rank=4 scaffold_56 . exon 120824 120933 . + . ID=Phyra81092.4;Parent=Phyra81092;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_56 . CDS 121040 121122 . + 0 ID=Phyra81092;Parent=Phyra81092;rank=5 scaffold_56 . exon 121040 121122 . + . ID=Phyra81092.5;Parent=Phyra81092;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_56 . CDS 121186 121412 . + 0 ID=Phyra81092;Parent=Phyra81092;rank=6 scaffold_56 . exon 121186 121412 . + . ID=Phyra81092.6;Parent=Phyra81092;constitutive=1;ensembl_phase=1;rank=6 scaffold_56 ensembl protein_coding_gene 121673 123168 . + . ID=Phyra81093;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000038;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 121673 123168 . + . ID=Phyra81093;Parent=Phyra81093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 121673 121830 . + 0 ID=Phyra81093;Parent=Phyra81093;rank=1 scaffold_56 . exon 121673 121830 . + . ID=Phyra81093.1;Parent=Phyra81093;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . CDS 121899 122100 . + 0 ID=Phyra81093;Parent=Phyra81093;rank=2 scaffold_56 . exon 121899 122100 . + . ID=Phyra81093.2;Parent=Phyra81093;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 . CDS 122208 122273 . + 0 ID=Phyra81093;Parent=Phyra81093;rank=3 scaffold_56 . exon 122208 122273 . + . ID=Phyra81093.3;Parent=Phyra81093;constitutive=1;rank=3 scaffold_56 . CDS 122353 122637 . + 0 ID=Phyra81093;Parent=Phyra81093;rank=4 scaffold_56 . exon 122353 122637 . + . ID=Phyra81093.4;Parent=Phyra81093;constitutive=1;rank=4 scaffold_56 . CDS 122730 122772 . + 0 ID=Phyra81093;Parent=Phyra81093;rank=5 scaffold_56 . exon 122730 122772 . + . ID=Phyra81093.5;Parent=Phyra81093;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_56 . CDS 122892 122959 . + 0 ID=Phyra81093;Parent=Phyra81093;rank=6 scaffold_56 . exon 122892 122959 . + . ID=Phyra81093.6;Parent=Phyra81093;constitutive=1;ensembl_phase=1;rank=6 scaffold_56 . CDS 123094 123168 . + 0 ID=Phyra81093;Parent=Phyra81093;rank=7 scaffold_56 . exon 123094 123168 . + . ID=Phyra81093.7;Parent=Phyra81093;constitutive=1;rank=7 scaffold_56 ensembl protein_coding_gene 128337 128726 . - . ID=Phyra50842;biotype=protein_coding;external_name=gwEuk.56.86.1;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 128337 128726 . - . ID=Phyra50842;Parent=Phyra50842;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 128337 128726 . - 0 ID=Phyra50842;Parent=Phyra50842;rank=1 scaffold_56 . exon 128337 128726 . - . ID=Phyra50842.1;Parent=Phyra50842;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 137633 138049 . - . ID=Phyra81095;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000040;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 137633 138049 . - . ID=Phyra81095;Parent=Phyra81095;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 137633 138049 . - 0 ID=Phyra81095;Parent=Phyra81095;rank=1 scaffold_56 . exon 137633 138049 . - . ID=Phyra81095.1;Parent=Phyra81095;constitutive=1;rank=1 scaffold_56 . repeat_region 142531 142549 . ? . description=dust scaffold_56 . biological_region 142582 142585 0.999 - . logic_name=eponine scaffold_56 . biological_region 144320 144324 0.999 - . logic_name=eponine scaffold_56 . biological_region 144648 144651 0.999 + . logic_name=eponine scaffold_56 . biological_region 144672 144677 0.999 - . logic_name=eponine scaffold_56 . biological_region 144716 144716 0.999 + . logic_name=eponine scaffold_56 . biological_region 144721 144728 0.999 - . logic_name=eponine scaffold_56 . biological_region 144726 144729 0.999 + . logic_name=eponine scaffold_56 . biological_region 144738 144739 0.999 - . logic_name=eponine scaffold_56 . biological_region 144800 144803 0.999 - . logic_name=eponine scaffold_56 . biological_region 145467 145468 0.999 - . logic_name=eponine scaffold_56 . biological_region 147211 147211 0.999 - . logic_name=eponine scaffold_56 . biological_region 147670 147673 0.999 + . logic_name=eponine scaffold_56 ensembl protein_coding_gene 139099 140278 . + . ID=Phyra81096;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000041;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 139099 140278 . + . ID=Phyra81096;Parent=Phyra81096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 139099 139720 . + 0 ID=Phyra81096;Parent=Phyra81096;rank=1 scaffold_56 . exon 139099 139720 . + . ID=Phyra81096.1;Parent=Phyra81096;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . CDS 139806 140278 . + 0 ID=Phyra81096;Parent=Phyra81096;rank=2 scaffold_56 . exon 139806 140278 . + . ID=Phyra81096.2;Parent=Phyra81096;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 ensembl protein_coding_gene 141967 143261 . + . ID=Phyra81097;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000042;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 141967 143261 . + . ID=Phyra81097;Parent=Phyra81097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 141967 141986 . + 0 ID=Phyra81097;Parent=Phyra81097;rank=1 scaffold_56 . exon 141967 141986 . + . ID=Phyra81097.1;Parent=Phyra81097;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . CDS 142031 142193 . + 0 ID=Phyra81097;Parent=Phyra81097;rank=2 scaffold_56 . exon 142031 142193 . + . ID=Phyra81097.2;Parent=Phyra81097;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 . CDS 142301 142366 . + 0 ID=Phyra81097;Parent=Phyra81097;rank=3 scaffold_56 . exon 142301 142366 . + . ID=Phyra81097.3;Parent=Phyra81097;constitutive=1;rank=3 scaffold_56 . CDS 142446 142730 . + 0 ID=Phyra81097;Parent=Phyra81097;rank=4 scaffold_56 . exon 142446 142730 . + . ID=Phyra81097.4;Parent=Phyra81097;constitutive=1;rank=4 scaffold_56 . CDS 142823 142865 . + 0 ID=Phyra81097;Parent=Phyra81097;rank=5 scaffold_56 . exon 142823 142865 . + . ID=Phyra81097.5;Parent=Phyra81097;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_56 . CDS 142985 143052 . + 0 ID=Phyra81097;Parent=Phyra81097;rank=6 scaffold_56 . exon 142985 143052 . + . ID=Phyra81097.6;Parent=Phyra81097;constitutive=1;ensembl_phase=1;rank=6 scaffold_56 . CDS 143187 143261 . + 0 ID=Phyra81097;Parent=Phyra81097;rank=7 scaffold_56 . exon 143187 143261 . + . ID=Phyra81097.7;Parent=Phyra81097;constitutive=1;rank=7 scaffold_56 ensembl protein_coding_gene 144014 146239 . + . ID=Phyra81098;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000043;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 144014 146239 . + . ID=Phyra81098;Parent=Phyra81098;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 144014 146239 . + 0 ID=Phyra81098;Parent=Phyra81098;rank=1 scaffold_56 . exon 144014 146239 . + . ID=Phyra81098.1;Parent=Phyra81098;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 146329 150004 . - . ID=Phyra95901;biotype=protein_coding;external_name=C_scaffold_56000019;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 146329 150004 . - . ID=Phyra95901;Parent=Phyra95901;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 146329 146840 . - 0 ID=Phyra95901;Parent=Phyra95901;rank=9 scaffold_56 . exon 146329 146840 . - . ID=Phyra95901.9;Parent=Phyra95901;constitutive=1;ensembl_phase=1;rank=9 scaffold_56 . CDS 146862 147045 . - 0 ID=Phyra95901;Parent=Phyra95901;rank=8 scaffold_56 . exon 146862 147045 . - . ID=Phyra95901.8;Parent=Phyra95901;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_56 . CDS 147111 147200 . - 0 ID=Phyra95901;Parent=Phyra95901;rank=7 scaffold_56 . exon 147111 147200 . - . ID=Phyra95901.7;Parent=Phyra95901;constitutive=1;rank=7 scaffold_56 . CDS 147222 148886 . - 0 ID=Phyra95901;Parent=Phyra95901;rank=6 scaffold_56 . exon 147222 148886 . - . ID=Phyra95901.6;Parent=Phyra95901;constitutive=1;rank=6 scaffold_56 . CDS 148938 148969 . - 0 ID=Phyra95901;Parent=Phyra95901;rank=5 scaffold_56 . CDS 149093 149233 . - 0 ID=Phyra95901;Parent=Phyra95901;rank=4 scaffold_56 . CDS 149279 149495 . - 0 ID=Phyra95901;Parent=Phyra95901;rank=3 scaffold_56 . CDS 149585 149619 . - 0 ID=Phyra95901;Parent=Phyra95901;rank=2 scaffold_56 . CDS 149653 150004 . - 0 ID=Phyra95901;Parent=Phyra95901;rank=1 scaffold_56 . repeat_region 150847 150894 . ? . description=trf scaffold_56 ensembl protein_coding_gene 150211 151260 . + . ID=Phyra81100;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000045;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 150211 151260 . + . ID=Phyra81100;Parent=Phyra81100;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 150211 151260 . + 0 ID=Phyra81100;Parent=Phyra81100;rank=1 scaffold_56 . exon 150211 151260 . + . ID=Phyra81100.1;Parent=Phyra81100;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 152909 153664 . + . ID=Phyra81102;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000047;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 152909 153664 . + . ID=Phyra81102;Parent=Phyra81102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 152909 153664 . + 0 ID=Phyra81102;Parent=Phyra81102;rank=1 scaffold_56 . exon 152909 153664 . + . ID=Phyra81102.1;Parent=Phyra81102;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 156023 156781 . + . ID=Phyra81103;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000048;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 156023 156781 . + . ID=Phyra81103;Parent=Phyra81103;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 156023 156781 . + 0 ID=Phyra81103;Parent=Phyra81103;rank=1 scaffold_56 . exon 156023 156781 . + . ID=Phyra81103.1;Parent=Phyra81103;constitutive=1;rank=1 scaffold_56 . exon 148938 148969 . - . ID=Phyra95901.5;Parent=Phyra95901;constitutive=1;ensembl_phase=1;rank=5 scaffold_56 . exon 149093 149233 . - . ID=Phyra95901.4;Parent=Phyra95901;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_56 . exon 149279 149495 . - . ID=Phyra95901.3;Parent=Phyra95901;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_56 . exon 149585 149619 . - . ID=Phyra95901.2;Parent=Phyra95901;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 . exon 149653 150004 . - . ID=Phyra95901.1;Parent=Phyra95901;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 151400 151952 . - . ID=Phyra95903;biotype=protein_coding;external_name=C_scaffold_56000021;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 151400 151952 . - . ID=Phyra95903;Parent=Phyra95903;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 151400 151590 . - 0 ID=Phyra95903;Parent=Phyra95903;rank=3 scaffold_56 . exon 151400 151590 . - . ID=Phyra95903.3;Parent=Phyra95903;constitutive=1;ensembl_phase=1;rank=3 scaffold_56 . CDS 151670 151743 . - 0 ID=Phyra95903;Parent=Phyra95903;rank=2 scaffold_56 . exon 151670 151743 . - . ID=Phyra95903.2;Parent=Phyra95903;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_56 . CDS 151813 151952 . - 0 ID=Phyra95903;Parent=Phyra95903;rank=1 scaffold_56 . exon 151813 151952 . - . ID=Phyra95903.1;Parent=Phyra95903;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . biological_region 158984 158984 0.999 + . logic_name=eponine scaffold_56 . biological_region 161388 161389 0.999 - . logic_name=eponine scaffold_56 . biological_region 163871 163874 0.999 - . logic_name=eponine scaffold_56 . biological_region 164453 164455 0.999 - . logic_name=eponine scaffold_56 ensembl protein_coding_gene 158899 160365 . + . ID=Phyra50855;biotype=protein_coding;external_name=gwEuk.56.99.1;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 158899 160365 . + . ID=Phyra50855;Parent=Phyra50855;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 158899 160365 . + 0 ID=Phyra50855;Parent=Phyra50855;rank=1 scaffold_56 . exon 158899 160365 . + . ID=Phyra50855.1;Parent=Phyra50855;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 160850 161455 . + . ID=Phyra81105;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000050;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 160850 161455 . + . ID=Phyra81105;Parent=Phyra81105;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 160850 161455 . + 0 ID=Phyra81105;Parent=Phyra81105;rank=1 scaffold_56 . exon 160850 161455 . + . ID=Phyra81105.1;Parent=Phyra81105;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 162463 163071 . + . ID=Phyra81106;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000051;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 162463 163071 . + . ID=Phyra81106;Parent=Phyra81106;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 162463 163071 . + 0 ID=Phyra81106;Parent=Phyra81106;rank=1 scaffold_56 . exon 162463 163071 . + . ID=Phyra81106.1;Parent=Phyra81106;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 163542 164150 . - . ID=Phyra81107;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000052;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 163542 164150 . - . ID=Phyra81107;Parent=Phyra81107;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 163542 164150 . - 0 ID=Phyra81107;Parent=Phyra81107;rank=1 scaffold_56 . exon 163542 164150 . - . ID=Phyra81107.1;Parent=Phyra81107;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 172319 172879 . - . ID=Phyra81108;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000053;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 172319 172879 . - . ID=Phyra81108;Parent=Phyra81108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 172319 172879 . - 0 ID=Phyra81108;Parent=Phyra81108;rank=1 scaffold_56 . exon 172319 172879 . - . ID=Phyra81108.1;Parent=Phyra81108;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 174832 180929 . - . ID=Phyra81110;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000055;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 174832 180929 . - . ID=Phyra81110;Parent=Phyra81110;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 174832 175523 . - 0 ID=Phyra81110;Parent=Phyra81110;rank=3 scaffold_56 . exon 174832 175523 . - . ID=Phyra81110.3;Parent=Phyra81110;constitutive=1;ensembl_phase=1;rank=3 scaffold_56 . CDS 176372 177496 . - 0 ID=Phyra81110;Parent=Phyra81110;rank=2 scaffold_56 . exon 176372 177496 . - . ID=Phyra81110.2;Parent=Phyra81110;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 177581 180929 . - 0 ID=Phyra81110;Parent=Phyra81110;rank=1 scaffold_56 ensembl protein_coding_gene 173229 174446 . - . ID=Phyra95904;biotype=protein_coding;external_name=C_scaffold_56000022;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 173229 174446 . - . ID=Phyra95904;Parent=Phyra95904;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 173229 174446 . - 0 ID=Phyra95904;Parent=Phyra95904;rank=1 scaffold_56 . exon 173229 174446 . - . ID=Phyra95904.1;Parent=Phyra95904;constitutive=1;rank=1 scaffold_56 . repeat_region 184780 184787 . ? . description=dust scaffold_56 . biological_region 185429 185434 0.999 + . logic_name=eponine scaffold_56 . biological_region 185507 185507 0.999 + . logic_name=eponine scaffold_56 . repeat_region 185700 185708 . ? . description=dust scaffold_56 . biological_region 185747 185756 0.999 + . logic_name=eponine scaffold_56 . exon 177581 180929 . - . ID=Phyra81110.1;Parent=Phyra81110;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 181264 182003 . - . ID=Phyra81111;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000056;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 181264 182003 . - . ID=Phyra81111;Parent=Phyra81111;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 181264 181321 . - 0 ID=Phyra81111;Parent=Phyra81111;rank=5 scaffold_56 . exon 181264 181321 . - . ID=Phyra81111.5;Parent=Phyra81111;constitutive=1;ensembl_phase=2;rank=5 scaffold_56 . CDS 181395 181522 . - 0 ID=Phyra81111;Parent=Phyra81111;rank=4 scaffold_56 . exon 181395 181522 . - . ID=Phyra81111.4;Parent=Phyra81111;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_56 . CDS 181606 181694 . - 0 ID=Phyra81111;Parent=Phyra81111;rank=3 scaffold_56 . exon 181606 181694 . - . ID=Phyra81111.3;Parent=Phyra81111;constitutive=1;ensembl_phase=1;rank=3 scaffold_56 . CDS 181768 181843 . - 0 ID=Phyra81111;Parent=Phyra81111;rank=2 scaffold_56 . exon 181768 181843 . - . ID=Phyra81111.2;Parent=Phyra81111;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_56 . CDS 181935 182003 . - 0 ID=Phyra81111;Parent=Phyra81111;rank=1 scaffold_56 . exon 181935 182003 . - . ID=Phyra81111.1;Parent=Phyra81111;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 182336 183351 . + . ID=Phyra81112;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000057;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 182336 183351 . + . ID=Phyra81112;Parent=Phyra81112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 182336 182422 . + 0 ID=Phyra81112;Parent=Phyra81112;rank=1 scaffold_56 . exon 182336 182422 . + . ID=Phyra81112.1;Parent=Phyra81112;constitutive=1;rank=1 scaffold_56 . CDS 182488 183015 . + 0 ID=Phyra81112;Parent=Phyra81112;rank=2 scaffold_56 . exon 182488 183015 . + . ID=Phyra81112.2;Parent=Phyra81112;constitutive=1;rank=2 scaffold_56 . CDS 183102 183206 . + 0 ID=Phyra81112;Parent=Phyra81112;rank=3 scaffold_56 . exon 183102 183206 . + . ID=Phyra81112.3;Parent=Phyra81112;constitutive=1;rank=3 scaffold_56 . CDS 183267 183307 . + 0 ID=Phyra81112;Parent=Phyra81112;rank=4 scaffold_56 . exon 183267 183307 . + . ID=Phyra81112.4;Parent=Phyra81112;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_56 . CDS 183345 183351 . + 0 ID=Phyra81112;Parent=Phyra81112;rank=5 scaffold_56 . exon 183345 183351 . + . ID=Phyra81112.5;Parent=Phyra81112;constitutive=1;ensembl_phase=2;rank=5 scaffold_56 ensembl protein_coding_gene 185150 186255 . - . ID=Phyra81113;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000058;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 185150 186255 . - . ID=Phyra81113;Parent=Phyra81113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 185150 185660 . - 0 ID=Phyra81113;Parent=Phyra81113;rank=3 scaffold_56 . exon 185150 185660 . - . ID=Phyra81113.3;Parent=Phyra81113;constitutive=1;ensembl_phase=2;rank=3 scaffold_56 . CDS 185751 185878 . - 0 ID=Phyra81113;Parent=Phyra81113;rank=2 scaffold_56 . exon 185751 185878 . - . ID=Phyra81113.2;Parent=Phyra81113;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_56 . CDS 185971 186255 . - 0 ID=Phyra81113;Parent=Phyra81113;rank=1 scaffold_56 . exon 185971 186255 . - . ID=Phyra81113.1;Parent=Phyra81113;constitutive=1;rank=1 scaffold_56 . repeat_region 191247 191321 . ? . description=trf scaffold_56 ensembl protein_coding_gene 187667 187993 . + . ID=Phyra81114;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000059;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 187667 187993 . + . ID=Phyra81114;Parent=Phyra81114;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 187667 187993 . + 0 ID=Phyra81114;Parent=Phyra81114;rank=1 scaffold_56 . exon 187667 187993 . + . ID=Phyra81114.1;Parent=Phyra81114;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 191201 192517 . + . ID=Phyra81115;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000060;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 191201 192517 . + . ID=Phyra81115;Parent=Phyra81115;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 191201 192517 . + 0 ID=Phyra81115;Parent=Phyra81115;rank=1 scaffold_56 . exon 191201 192517 . + . ID=Phyra81115.1;Parent=Phyra81115;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 193971 199133 . - . ID=Phyra81116;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000061;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 193971 199133 . - . ID=Phyra81116;Parent=Phyra81116;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 193971 195913 . - 0 ID=Phyra81116;Parent=Phyra81116;rank=3 scaffold_56 . exon 193971 195913 . - . ID=Phyra81116.3;Parent=Phyra81116;constitutive=1;ensembl_phase=1;rank=3 scaffold_56 . CDS 196550 196697 . - 0 ID=Phyra81116;Parent=Phyra81116;rank=2 scaffold_56 . exon 196550 196697 . - . ID=Phyra81116.2;Parent=Phyra81116;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_56 . CDS 197037 199133 . - 0 ID=Phyra81116;Parent=Phyra81116;rank=1 scaffold_56 . biological_region 198673 198677 0.999 - . logic_name=eponine scaffold_56 . repeat_region 199514 199560 . ? . description=dust scaffold_56 . biological_region 200270 200272 0.999 - . logic_name=eponine scaffold_56 . biological_region 202446 202452 0.999 + . logic_name=eponine scaffold_56 . biological_region 202845 202848 0.999 + . logic_name=eponine scaffold_56 . biological_region 202981 202985 0.999 + . logic_name=eponine scaffold_56 . biological_region 205657 205659 0.999 + . logic_name=eponine scaffold_56 . exon 197037 199133 . - . ID=Phyra81116.1;Parent=Phyra81116;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 199821 201605 . + . ID=Phyra81117;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000062;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 199821 201605 . + . ID=Phyra81117;Parent=Phyra81117;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 199821 201605 . + 0 ID=Phyra81117;Parent=Phyra81117;rank=1 scaffold_56 . exon 199821 201605 . + . ID=Phyra81117.1;Parent=Phyra81117;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 201853 203327 . - . ID=Phyra81118;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000063;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 201853 203327 . - . ID=Phyra81118;Parent=Phyra81118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 201853 201958 . - 0 ID=Phyra81118;Parent=Phyra81118;rank=3 scaffold_56 . exon 201853 201958 . - . ID=Phyra81118.3;Parent=Phyra81118;constitutive=1;ensembl_phase=2;rank=3 scaffold_56 . CDS 202033 202240 . - 0 ID=Phyra81118;Parent=Phyra81118;rank=2 scaffold_56 . exon 202033 202240 . - . ID=Phyra81118.2;Parent=Phyra81118;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_56 . CDS 202325 203327 . - 0 ID=Phyra81118;Parent=Phyra81118;rank=1 scaffold_56 . exon 202325 203327 . - . ID=Phyra81118.1;Parent=Phyra81118;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 203426 204566 . + . ID=Phyra81119;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000064;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 203426 204566 . + . ID=Phyra81119;Parent=Phyra81119;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 203426 203793 . + 0 ID=Phyra81119;Parent=Phyra81119;rank=1 scaffold_56 . exon 203426 203793 . + . ID=Phyra81119.1;Parent=Phyra81119;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . CDS 203855 204137 . + 0 ID=Phyra81119;Parent=Phyra81119;rank=2 scaffold_56 . exon 203855 204137 . + . ID=Phyra81119.2;Parent=Phyra81119;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 . CDS 204203 204273 . + 0 ID=Phyra81119;Parent=Phyra81119;rank=3 scaffold_56 . exon 204203 204273 . + . ID=Phyra81119.3;Parent=Phyra81119;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_56 . CDS 204350 204566 . + 0 ID=Phyra81119;Parent=Phyra81119;rank=4 scaffold_56 . exon 204350 204566 . + . ID=Phyra81119.4;Parent=Phyra81119;constitutive=1;ensembl_phase=2;rank=4 scaffold_56 ensembl protein_coding_gene 204996 207575 . - . ID=Phyra81120;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000065;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 204996 207575 . - . ID=Phyra81120;Parent=Phyra81120;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 204996 207575 . - 0 ID=Phyra81120;Parent=Phyra81120;rank=1 scaffold_56 . exon 204996 207575 . - . ID=Phyra81120.1;Parent=Phyra81120;constitutive=1;rank=1 scaffold_56 . repeat_region 215991 216017 . ? . description=trf scaffold_56 ensembl protein_coding_gene 214204 215262 . - . ID=Phyra71868;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_56000008;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 214204 215262 . - . ID=Phyra71868;Parent=Phyra71868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 214204 215262 . - 0 ID=Phyra71868;Parent=Phyra71868;rank=1 scaffold_56 . exon 214204 215262 . - . ID=Phyra71868.1;Parent=Phyra71868;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 210823 211181 . - . ID=Phyra81121;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000066;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 210823 211181 . - . ID=Phyra81121;Parent=Phyra81121;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 210823 210912 . - 0 ID=Phyra81121;Parent=Phyra81121;rank=2 scaffold_56 . exon 210823 210912 . - . ID=Phyra81121.2;Parent=Phyra81121;constitutive=1;rank=2 scaffold_56 . CDS 210954 211181 . - 0 ID=Phyra81121;Parent=Phyra81121;rank=1 scaffold_56 . exon 210954 211181 . - . ID=Phyra81121.1;Parent=Phyra81121;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 211465 213826 . + . ID=Phyra81122;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000067;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 211465 213826 . + . ID=Phyra81122;Parent=Phyra81122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 211465 211647 . + 0 ID=Phyra81122;Parent=Phyra81122;rank=1 scaffold_56 . exon 211465 211647 . + . ID=Phyra81122.1;Parent=Phyra81122;constitutive=1;rank=1 scaffold_56 . CDS 211719 211822 . + 0 ID=Phyra81122;Parent=Phyra81122;rank=2 scaffold_56 . exon 211719 211822 . + . ID=Phyra81122.2;Parent=Phyra81122;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_56 . CDS 211891 212034 . + 0 ID=Phyra81122;Parent=Phyra81122;rank=3 scaffold_56 . exon 211891 212034 . + . ID=Phyra81122.3;Parent=Phyra81122;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_56 . CDS 212100 212237 . + 0 ID=Phyra81122;Parent=Phyra81122;rank=4 scaffold_56 . exon 212100 212237 . + . ID=Phyra81122.4;Parent=Phyra81122;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_56 . CDS 212298 212393 . + 0 ID=Phyra81122;Parent=Phyra81122;rank=5 scaffold_56 . exon 212298 212393 . + . ID=Phyra81122.5;Parent=Phyra81122;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_56 . CDS 212465 212912 . + 0 ID=Phyra81122;Parent=Phyra81122;rank=6 scaffold_56 . exon 212465 212912 . + . ID=Phyra81122.6;Parent=Phyra81122;constitutive=1;ensembl_phase=2;rank=6 scaffold_56 . CDS 212988 213117 . + 0 ID=Phyra81122;Parent=Phyra81122;rank=7 scaffold_56 . exon 212988 213117 . + . ID=Phyra81122.7;Parent=Phyra81122;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_56 . CDS 213194 213318 . + 0 ID=Phyra81122;Parent=Phyra81122;rank=8 scaffold_56 . exon 213194 213318 . + . ID=Phyra81122.8;Parent=Phyra81122;constitutive=1;ensembl_phase=1;rank=8 scaffold_56 . CDS 213380 213826 . + 0 ID=Phyra81122;Parent=Phyra81122;rank=9 scaffold_56 . exon 213380 213826 . + . ID=Phyra81122.9;Parent=Phyra81122;constitutive=1;rank=9 scaffold_56 . repeat_region 218931 218938 . ? . description=dust scaffold_56 . biological_region 220579 220580 0.999 - . logic_name=eponine scaffold_56 . biological_region 221121 221122 0.999 + . logic_name=eponine scaffold_56 . repeat_region 221831 221838 . ? . description=dust scaffold_56 . biological_region 222324 222324 0.999 - . logic_name=eponine scaffold_56 . biological_region 226407 226409 0.999 - . logic_name=eponine scaffold_56 ensembl protein_coding_gene 217196 218671 . + . ID=Phyra81124;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000069;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 217196 218671 . + . ID=Phyra81124;Parent=Phyra81124;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 217196 218521 . + 0 ID=Phyra81124;Parent=Phyra81124;rank=1 scaffold_56 . exon 217196 218521 . + . ID=Phyra81124.1;Parent=Phyra81124;constitutive=1;rank=1 scaffold_56 . CDS 218600 218671 . + 0 ID=Phyra81124;Parent=Phyra81124;rank=2 scaffold_56 . exon 218600 218671 . + . ID=Phyra81124.2;Parent=Phyra81124;constitutive=1;rank=2 scaffold_56 ensembl protein_coding_gene 219179 221379 . - . ID=Phyra81125;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000070;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 219179 221379 . - . ID=Phyra81125;Parent=Phyra81125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 219179 219842 . - 0 ID=Phyra81125;Parent=Phyra81125;rank=3 scaffold_56 . exon 219179 219842 . - . ID=Phyra81125.3;Parent=Phyra81125;constitutive=1;ensembl_phase=2;rank=3 scaffold_56 . CDS 219923 220056 . - 0 ID=Phyra81125;Parent=Phyra81125;rank=2 scaffold_56 . exon 219923 220056 . - . ID=Phyra81125.2;Parent=Phyra81125;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_56 . CDS 220147 221379 . - 0 ID=Phyra81125;Parent=Phyra81125;rank=1 scaffold_56 . exon 220147 221379 . - . ID=Phyra81125.1;Parent=Phyra81125;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 223122 226301 . + . ID=Phyra95914;biotype=protein_coding;external_name=C_scaffold_56000032;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 223122 226301 . + . ID=Phyra95914;Parent=Phyra95914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 223122 225952 . + 0 ID=Phyra95914;Parent=Phyra95914;rank=1 scaffold_56 . exon 223122 225952 . + . ID=Phyra95914.1;Parent=Phyra95914;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . CDS 225983 226301 . + 0 ID=Phyra95914;Parent=Phyra95914;rank=2 scaffold_56 . exon 225983 226301 . + . ID=Phyra95914.2;Parent=Phyra95914;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 . repeat_region 227642 227680 . ? . description=trf scaffold_56 . repeat_region 235184 235209 . ? . description=trf scaffold_56 . repeat_region 235960 235986 . ? . description=trf scaffold_56 ensembl pseudogene 227724 232168 . - . ID=Phyra50775;biotype=pseudogene;external_name=gwEuk.56.19.1;logic_name=jgi_phyra1 scaffold_56 ensembl pseudogene 227724 232168 . - . ID=Phyra50775;Parent=Phyra50775;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_56 . exon 227724 228510 . - . ID=Phyra50775.6;Parent=Phyra50775;constitutive=1;ensembl_phase=2;rank=6 scaffold_56 . exon 228634 229210 . - . ID=Phyra50775.5;Parent=Phyra50775;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_56 . exon 229326 229429 . - . ID=Phyra50775.4;Parent=Phyra50775;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_56 . exon 230279 231020 . - . ID=Phyra50775.3;Parent=Phyra50775;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_56 . exon 231093 231677 . - . ID=Phyra50775.2;Parent=Phyra50775;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_56 . exon 231838 232168 . - . ID=Phyra50775.1;Parent=Phyra50775;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 226512 227245 . - . ID=Phyra81127;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000072;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 226512 227245 . - . ID=Phyra81127;Parent=Phyra81127;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 226512 226628 . - 0 ID=Phyra81127;Parent=Phyra81127;rank=3 scaffold_56 . exon 226512 226628 . - . ID=Phyra81127.3;Parent=Phyra81127;constitutive=1;rank=3 scaffold_56 . CDS 226677 227106 . - 0 ID=Phyra81127;Parent=Phyra81127;rank=2 scaffold_56 . exon 226677 227106 . - . ID=Phyra81127.2;Parent=Phyra81127;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 . CDS 227193 227245 . - 0 ID=Phyra81127;Parent=Phyra81127;rank=1 scaffold_56 . exon 227193 227245 . - . ID=Phyra81127.1;Parent=Phyra81127;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 ensembl protein_coding_gene 235654 236444 . + . ID=Phyra81129;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000074;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 235654 236444 . + . ID=Phyra81129;Parent=Phyra81129;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 235654 235869 . + 0 ID=Phyra81129;Parent=Phyra81129;rank=1 scaffold_56 . exon 235654 235869 . + . ID=Phyra81129.1;Parent=Phyra81129;constitutive=1;rank=1 scaffold_56 . CDS 235941 236444 . + 0 ID=Phyra81129;Parent=Phyra81129;rank=2 scaffold_56 . exon 235941 236444 . + . ID=Phyra81129.2;Parent=Phyra81129;constitutive=1;rank=2 scaffold_56 . repeat_region 239455 239733 . ? . description=dust scaffold_56 . repeat_region 241039 241094 . ? . description=dust scaffold_56 . repeat_region 241281 241343 . ? . description=dust scaffold_56 . repeat_region 241473 241517 . ? . description=dust scaffold_56 . repeat_region 241697 241759 . ? . description=dust scaffold_56 . repeat_region 241874 241926 . ? . description=dust scaffold_56 . repeat_region 242113 242175 . ? . description=dust scaffold_56 . repeat_region 242471 242480 . ? . description=dust scaffold_56 . biological_region 242966 242967 0.999 - . logic_name=eponine scaffold_56 . repeat_region 243189 243196 . ? . description=dust scaffold_56 . repeat_region 245489 248241 . ? . description=dust scaffold_56 ensembl tRNA_gene 240761 240833 . - . ID=EPrPRAG00000000018;biotype=tRNA;description=tRNA-Glu for anticodon UUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_56 ensembl transcript 240761 240833 . - . ID=EPrPRAT00000000018;Parent=EPrPRAG00000000018;biotype=tRNA;logic_name=ncrna_eg scaffold_56 ensembl tRNA_gene 242017 242089 . - . ID=EPrPRAG00000000075;biotype=tRNA;description=tRNA-Glu for anticodon UUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_56 ensembl transcript 242017 242089 . - . ID=EPrPRAT00000000075;Parent=EPrPRAG00000000075;biotype=tRNA;logic_name=ncrna_eg scaffold_56 ensembl tRNA_gene 241185 241257 . - . ID=EPrPRAG00000000116;biotype=tRNA;description=tRNA-Glu for anticodon UUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_56 ensembl transcript 241185 241257 . - . ID=EPrPRAT00000000116;Parent=EPrPRAG00000000116;biotype=tRNA;logic_name=ncrna_eg scaffold_56 ensembl tRNA_gene 241601 241673 . - . ID=EPrPRAG00000000192;biotype=tRNA;description=tRNA-Glu for anticodon UUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_56 ensembl transcript 241601 241673 . - . ID=EPrPRAT00000000192;Parent=EPrPRAG00000000192;biotype=tRNA;logic_name=ncrna_eg scaffold_56 . exon 240761 240833 . - . ID=EPrPRAE00000000018;Parent=EPrPRAT00000000018;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . exon 242017 242089 . - . ID=EPrPRAE00000000075;Parent=EPrPRAT00000000075;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . exon 241185 241257 . - . ID=EPrPRAE00000000116;Parent=EPrPRAT00000000116;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . exon 241601 241673 . - . ID=EPrPRAE00000000192;Parent=EPrPRAT00000000192;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 243711 244937 . - . ID=Phyra71870;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_56000010;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 243711 244937 . - . ID=Phyra71870;Parent=Phyra71870;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 243711 244937 . - 0 ID=Phyra71870;Parent=Phyra71870;rank=1 scaffold_56 . exon 243711 244937 . - . ID=Phyra71870.1;Parent=Phyra71870;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 237794 238853 . + . ID=Phyra81130;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000075;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 237794 238853 . + . ID=Phyra81130;Parent=Phyra81130;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 237794 237807 . + 0 ID=Phyra81130;Parent=Phyra81130;rank=1 scaffold_56 . exon 237794 237807 . + . ID=Phyra81130.1;Parent=Phyra81130;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . CDS 237845 238853 . + 0 ID=Phyra81130;Parent=Phyra81130;rank=2 scaffold_56 . exon 237845 238853 . + . ID=Phyra81130.2;Parent=Phyra81130;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 ensembl protein_coding_gene 240955 242359 . - . ID=Phyra81131;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000076;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 240955 242359 . - . ID=Phyra81131;Parent=Phyra81131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 240955 241108 . - 0 ID=Phyra81131;Parent=Phyra81131;rank=5 scaffold_56 . exon 240955 241108 . - . ID=Phyra81131.5;Parent=Phyra81131;constitutive=1;ensembl_phase=2;rank=5 scaffold_56 . CDS 241383 241658 . - 0 ID=Phyra81131;Parent=Phyra81131;rank=4 scaffold_56 . exon 241383 241658 . - . ID=Phyra81131.4;Parent=Phyra81131;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_56 . CDS 241799 242074 . - 0 ID=Phyra81131;Parent=Phyra81131;rank=3 scaffold_56 . exon 241799 242074 . - . ID=Phyra81131.3;Parent=Phyra81131;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_56 . CDS 242215 242279 . - 0 ID=Phyra81131;Parent=Phyra81131;rank=2 scaffold_56 . exon 242215 242279 . - . ID=Phyra81131.2;Parent=Phyra81131;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_56 . CDS 242345 242359 . - 0 ID=Phyra81131;Parent=Phyra81131;rank=1 scaffold_56 . exon 242345 242359 . - . ID=Phyra81131.1;Parent=Phyra81131;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 249483 253761 . + . ID=Phyra81133;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000078;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 249483 253761 . + . ID=Phyra81133;Parent=Phyra81133;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 249483 249576 . + 0 ID=Phyra81133;Parent=Phyra81133;rank=1 scaffold_56 . exon 249483 249576 . + . ID=Phyra81133.1;Parent=Phyra81133;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . CDS 249709 249842 . + 0 ID=Phyra81133;Parent=Phyra81133;rank=2 scaffold_56 . exon 249709 249842 . + . ID=Phyra81133.2;Parent=Phyra81133;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 250011 250191 . + 0 ID=Phyra81133;Parent=Phyra81133;rank=3 scaffold_56 . exon 250011 250191 . + . ID=Phyra81133.3;Parent=Phyra81133;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_56 . CDS 250415 250577 . + 0 ID=Phyra81133;Parent=Phyra81133;rank=4 scaffold_56 . exon 250415 250577 . + . ID=Phyra81133.4;Parent=Phyra81133;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_56 . CDS 250667 252244 . + 0 ID=Phyra81133;Parent=Phyra81133;rank=5 scaffold_56 . exon 250667 252244 . + . ID=Phyra81133.5;Parent=Phyra81133;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_56 . CDS 252657 252849 . + 0 ID=Phyra81133;Parent=Phyra81133;rank=6 scaffold_56 . exon 252657 252849 . + . ID=Phyra81133.6;Parent=Phyra81133;constitutive=1;ensembl_phase=2;rank=6 scaffold_56 . CDS 253185 253407 . + 0 ID=Phyra81133;Parent=Phyra81133;rank=7 scaffold_56 . exon 253185 253407 . + . ID=Phyra81133.7;Parent=Phyra81133;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_56 . CDS 253526 253761 . + 0 ID=Phyra81133;Parent=Phyra81133;rank=8 scaffold_56 . exon 253526 253761 . + . ID=Phyra81133.8;Parent=Phyra81133;constitutive=1;ensembl_phase=1;rank=8 scaffold_56 . repeat_region 256314 257941 . ? . description=dust scaffold_56 . repeat_region 262181 269931 . ? . description=dust scaffold_56 ensembl protein_coding_gene 258369 261428 . + . ID=Phyra81134;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000079;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 258369 261428 . + . ID=Phyra81134;Parent=Phyra81134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 258369 261428 . + 0 ID=Phyra81134;Parent=Phyra81134;rank=1 scaffold_56 . exon 258369 261428 . + . ID=Phyra81134.1;Parent=Phyra81134;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 272046 273409 . - . ID=Phyra81135;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000080;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 272046 273409 . - . ID=Phyra81135;Parent=Phyra81135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 272046 272209 . - 0 ID=Phyra81135;Parent=Phyra81135;rank=6 scaffold_56 . exon 272046 272209 . - . ID=Phyra81135.6;Parent=Phyra81135;constitutive=1;ensembl_phase=1;rank=6 scaffold_56 . CDS 272284 272402 . - 0 ID=Phyra81135;Parent=Phyra81135;rank=5 scaffold_56 . exon 272284 272402 . - . ID=Phyra81135.5;Parent=Phyra81135;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_56 . CDS 272490 272565 . - 0 ID=Phyra81135;Parent=Phyra81135;rank=4 scaffold_56 . exon 272490 272565 . - . ID=Phyra81135.4;Parent=Phyra81135;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_56 . CDS 272644 272927 . - 0 ID=Phyra81135;Parent=Phyra81135;rank=3 scaffold_56 . exon 272644 272927 . - . ID=Phyra81135.3;Parent=Phyra81135;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_56 . CDS 272994 273318 . - 0 ID=Phyra81135;Parent=Phyra81135;rank=2 scaffold_56 . exon 272994 273318 . - . ID=Phyra81135.2;Parent=Phyra81135;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_56 . CDS 273394 273409 . - 0 ID=Phyra81135;Parent=Phyra81135;rank=1 scaffold_56 . exon 273394 273409 . - . ID=Phyra81135.1;Parent=Phyra81135;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 274007 276293 . - . ID=Phyra81136;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000081;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 274007 276293 . - . ID=Phyra81136;Parent=Phyra81136;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 274007 274234 . - 0 ID=Phyra81136;Parent=Phyra81136;rank=10 scaffold_56 . exon 274007 274234 . - . ID=Phyra81136.10;Parent=Phyra81136;constitutive=1;rank=10 scaffold_56 . CDS 274327 274564 . - 0 ID=Phyra81136;Parent=Phyra81136;rank=9 scaffold_56 . exon 274327 274564 . - . ID=Phyra81136.9;Parent=Phyra81136;constitutive=1;ensembl_phase=2;rank=9 scaffold_56 . CDS 274649 274731 . - 0 ID=Phyra81136;Parent=Phyra81136;rank=8 scaffold_56 . exon 274649 274731 . - . ID=Phyra81136.8;Parent=Phyra81136;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_56 . CDS 274809 274877 . - 0 ID=Phyra81136;Parent=Phyra81136;rank=7 scaffold_56 . exon 274809 274877 . - . ID=Phyra81136.7;Parent=Phyra81136;constitutive=1;rank=7 scaffold_56 . CDS 274963 275032 . - 0 ID=Phyra81136;Parent=Phyra81136;rank=6 scaffold_56 . exon 274963 275032 . - . ID=Phyra81136.6;Parent=Phyra81136;constitutive=1;ensembl_phase=2;rank=6 scaffold_56 . CDS 275119 275467 . - 0 ID=Phyra81136;Parent=Phyra81136;rank=5 scaffold_56 . exon 275119 275467 . - . ID=Phyra81136.5;Parent=Phyra81136;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_56 . CDS 275549 275657 . - 0 ID=Phyra81136;Parent=Phyra81136;rank=4 scaffold_56 . exon 275549 275657 . - . ID=Phyra81136.4;Parent=Phyra81136;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_56 . CDS 275724 275798 . - 0 ID=Phyra81136;Parent=Phyra81136;rank=3 scaffold_56 . CDS 275891 276121 . - 0 ID=Phyra81136;Parent=Phyra81136;rank=2 scaffold_56 . CDS 276180 276293 . - 0 ID=Phyra81136;Parent=Phyra81136;rank=1 scaffold_56 . biological_region 276626 276629 0.999 - . logic_name=eponine scaffold_56 . repeat_region 282103 282139 . ? . description=trf scaffold_56 ensembl protein_coding_gene 277125 280933 . - . ID=Phyra71871;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_56000011;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 277125 280933 . - . ID=Phyra71871;Parent=Phyra71871;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 277125 279344 . - 0 ID=Phyra71871;Parent=Phyra71871;rank=4 scaffold_56 . exon 277125 279344 . - . ID=Phyra71871.4;Parent=Phyra71871;constitutive=1;rank=4 scaffold_56 . CDS 280235 280264 . - 0 ID=Phyra71871;Parent=Phyra71871;rank=3 scaffold_56 . exon 280235 280264 . - . ID=Phyra71871.3;Parent=Phyra71871;constitutive=1;rank=3 scaffold_56 . CDS 280695 280740 . - 0 ID=Phyra71871;Parent=Phyra71871;rank=2 scaffold_56 . exon 280695 280740 . - . ID=Phyra71871.2;Parent=Phyra71871;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 . CDS 280875 280933 . - 0 ID=Phyra71871;Parent=Phyra71871;rank=1 scaffold_56 . exon 280875 280933 . - . ID=Phyra71871.1;Parent=Phyra71871;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . exon 275724 275798 . - . ID=Phyra81136.3;Parent=Phyra81136;constitutive=1;rank=3 scaffold_56 . exon 275891 276121 . - . ID=Phyra81136.2;Parent=Phyra81136;constitutive=1;rank=2 scaffold_56 . exon 276180 276293 . - . ID=Phyra81136.1;Parent=Phyra81136;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 282711 283157 . - . ID=Phyra81138;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000083;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 282711 283157 . - . ID=Phyra81138;Parent=Phyra81138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 282711 283157 . - 0 ID=Phyra81138;Parent=Phyra81138;rank=1 scaffold_56 . exon 282711 283157 . - . ID=Phyra81138.1;Parent=Phyra81138;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 284822 285233 . - . ID=Phyra81139;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000084;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 284822 285233 . - . ID=Phyra81139;Parent=Phyra81139;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 284822 284833 . - 0 ID=Phyra81139;Parent=Phyra81139;rank=2 scaffold_56 . exon 284822 284833 . - . ID=Phyra81139.2;Parent=Phyra81139;constitutive=1;rank=2 scaffold_56 . CDS 284919 285233 . - 0 ID=Phyra81139;Parent=Phyra81139;rank=1 scaffold_56 . exon 284919 285233 . - . ID=Phyra81139.1;Parent=Phyra81139;constitutive=1;rank=1 scaffold_56 . repeat_region 290200 290217 . ? . description=dust scaffold_56 . repeat_region 292764 292803 . ? . description=dust scaffold_56 ensembl protein_coding_gene 292962 295982 . - . ID=Phyra81141;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000086;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 292962 295982 . - . ID=Phyra81141;Parent=Phyra81141;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 292962 293591 . - 0 ID=Phyra81141;Parent=Phyra81141;rank=4 scaffold_56 . exon 292962 293591 . - . ID=Phyra81141.4;Parent=Phyra81141;constitutive=1;rank=4 scaffold_56 . CDS 293653 295087 . - 0 ID=Phyra81141;Parent=Phyra81141;rank=3 scaffold_56 . exon 293653 295087 . - . ID=Phyra81141.3;Parent=Phyra81141;constitutive=1;ensembl_phase=2;rank=3 scaffold_56 . CDS 295637 295888 . - 0 ID=Phyra81141;Parent=Phyra81141;rank=2 scaffold_56 . CDS 295978 295982 . - 0 ID=Phyra81141;Parent=Phyra81141;rank=1 scaffold_56 ensembl protein_coding_gene 290809 292295 . + . ID=Phyra95915;biotype=protein_coding;external_name=C_scaffold_56000033;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 290809 292295 . + . ID=Phyra95915;Parent=Phyra95915;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 290809 292001 . + 0 ID=Phyra95915;Parent=Phyra95915;rank=1 scaffold_56 . exon 290809 292001 . + . ID=Phyra95915.1;Parent=Phyra95915;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . CDS 292292 292295 . + 0 ID=Phyra95915;Parent=Phyra95915;rank=2 scaffold_56 . exon 292292 292295 . + . ID=Phyra95915.2;Parent=Phyra95915;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 . biological_region 296328 296328 0.999 - . logic_name=eponine scaffold_56 . exon 295637 295888 . - . ID=Phyra81141.2;Parent=Phyra81141;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_56 . exon 295978 295982 . - . ID=Phyra81141.1;Parent=Phyra81141;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 ensembl protein_coding_gene 296250 297341 . + . ID=Phyra81142;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000087;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 296250 297341 . + . ID=Phyra81142;Parent=Phyra81142;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 296250 296468 . + 0 ID=Phyra81142;Parent=Phyra81142;rank=1 scaffold_56 . exon 296250 296468 . + . ID=Phyra81142.1;Parent=Phyra81142;constitutive=1;rank=1 scaffold_56 . CDS 296513 296602 . + 0 ID=Phyra81142;Parent=Phyra81142;rank=2 scaffold_56 . exon 296513 296602 . + . ID=Phyra81142.2;Parent=Phyra81142;constitutive=1;rank=2 scaffold_56 . CDS 296695 296758 . + 0 ID=Phyra81142;Parent=Phyra81142;rank=3 scaffold_56 . exon 296695 296758 . + . ID=Phyra81142.3;Parent=Phyra81142;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_56 . CDS 296835 296954 . + 0 ID=Phyra81142;Parent=Phyra81142;rank=4 scaffold_56 . exon 296835 296954 . + . ID=Phyra81142.4;Parent=Phyra81142;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_56 . CDS 297013 297341 . + 0 ID=Phyra81142;Parent=Phyra81142;rank=5 scaffold_56 . exon 297013 297341 . + . ID=Phyra81142.5;Parent=Phyra81142;constitutive=1;ensembl_phase=1;rank=5 scaffold_56 ensembl protein_coding_gene 297472 298275 . - . ID=Phyra81143;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000088;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 297472 298275 . - . ID=Phyra81143;Parent=Phyra81143;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 297472 298275 . - 0 ID=Phyra81143;Parent=Phyra81143;rank=1 scaffold_56 . exon 297472 298275 . - . ID=Phyra81143.1;Parent=Phyra81143;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 314486 317788 . + . ID=Phyra71872;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_56000012;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 314486 317788 . + . ID=Phyra71872;Parent=Phyra71872;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 314486 315800 . + 0 ID=Phyra71872;Parent=Phyra71872;rank=1 scaffold_56 . exon 314486 315800 . + . ID=Phyra71872.1;Parent=Phyra71872;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . CDS 315829 315857 . + 0 ID=Phyra71872;Parent=Phyra71872;rank=2 scaffold_56 . CDS 315959 316977 . + 0 ID=Phyra71872;Parent=Phyra71872;rank=3 scaffold_56 . CDS 317012 317018 . + 0 ID=Phyra71872;Parent=Phyra71872;rank=4 scaffold_56 . CDS 317051 317788 . + 0 ID=Phyra71872;Parent=Phyra71872;rank=5 scaffold_56 ensembl protein_coding_gene 312551 314228 . + . ID=Phyra81144;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000089;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 312551 314228 . + . ID=Phyra81144;Parent=Phyra81144;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 312551 312944 . + 0 ID=Phyra81144;Parent=Phyra81144;rank=1 scaffold_56 . exon 312551 312944 . + . ID=Phyra81144.1;Parent=Phyra81144;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . CDS 313015 313101 . + 0 ID=Phyra81144;Parent=Phyra81144;rank=2 scaffold_56 . exon 313015 313101 . + . ID=Phyra81144.2;Parent=Phyra81144;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 313180 313310 . + 0 ID=Phyra81144;Parent=Phyra81144;rank=3 scaffold_56 . exon 313180 313310 . + . ID=Phyra81144.3;Parent=Phyra81144;constitutive=1;ensembl_phase=1;rank=3 scaffold_56 . CDS 313381 313659 . + 0 ID=Phyra81144;Parent=Phyra81144;rank=4 scaffold_56 . exon 313381 313659 . + . ID=Phyra81144.4;Parent=Phyra81144;constitutive=1;rank=4 scaffold_56 . CDS 313751 313870 . + 0 ID=Phyra81144;Parent=Phyra81144;rank=5 scaffold_56 . exon 313751 313870 . + . ID=Phyra81144.5;Parent=Phyra81144;constitutive=1;rank=5 scaffold_56 . CDS 313959 314228 . + 0 ID=Phyra81144;Parent=Phyra81144;rank=6 scaffold_56 . exon 313959 314228 . + . ID=Phyra81144.6;Parent=Phyra81144;constitutive=1;rank=6 scaffold_56 . biological_region 315105 315107 0.999 - . logic_name=eponine scaffold_56 . repeat_region 317739 317769 . ? . description=trf scaffold_56 . biological_region 318167 318169 0.999 + . logic_name=eponine scaffold_56 . biological_region 318284 318285 0.999 - . logic_name=eponine scaffold_56 . biological_region 318603 318610 0.999 - . logic_name=eponine scaffold_56 . biological_region 318628 318634 0.999 - . logic_name=eponine scaffold_56 . biological_region 318641 318644 0.999 + . logic_name=eponine scaffold_56 . biological_region 318660 318664 0.999 + . logic_name=eponine scaffold_56 . biological_region 318739 318741 0.999 - . logic_name=eponine scaffold_56 . biological_region 318874 318876 0.999 + . logic_name=eponine scaffold_56 . biological_region 322448 322451 0.999 - . logic_name=eponine scaffold_56 . exon 315829 315857 . + . ID=Phyra71872.2;Parent=Phyra71872;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 . exon 315959 316977 . + . ID=Phyra71872.3;Parent=Phyra71872;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_56 . exon 317012 317018 . + . ID=Phyra71872.4;Parent=Phyra71872;constitutive=1;ensembl_phase=2;rank=4 scaffold_56 . exon 317051 317788 . + . ID=Phyra71872.5;Parent=Phyra71872;constitutive=1;rank=5 scaffold_56 ensembl protein_coding_gene 318487 319425 . + . ID=Phyra81146;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000091;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 318487 319425 . + . ID=Phyra81146;Parent=Phyra81146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 318487 319425 . + 0 ID=Phyra81146;Parent=Phyra81146;rank=1 scaffold_56 . exon 318487 319425 . + . ID=Phyra81146.1;Parent=Phyra81146;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 321981 324472 . - . ID=Phyra81147;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000092;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 321981 324472 . - . ID=Phyra81147;Parent=Phyra81147;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 321981 323441 . - 0 ID=Phyra81147;Parent=Phyra81147;rank=2 scaffold_56 . exon 321981 323441 . - . ID=Phyra81147.2;Parent=Phyra81147;constitutive=1;rank=2 scaffold_56 . CDS 323885 324472 . - 0 ID=Phyra81147;Parent=Phyra81147;rank=1 scaffold_56 . exon 323885 324472 . - . ID=Phyra81147.1;Parent=Phyra81147;constitutive=1;rank=1 scaffold_56 . repeat_region 327410 327418 . ? . description=dust scaffold_56 . repeat_region 334275 334344 . ? . description=dust scaffold_56 . repeat_region 334428 334485 . ? . description=dust scaffold_56 ensembl tRNA_gene 334165 334237 . - . ID=EPrPRAG00000000167;biotype=tRNA;description=tRNA-Glu for anticodon UUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_56 ensembl transcript 334165 334237 . - . ID=EPrPRAT00000000167;Parent=EPrPRAG00000000167;biotype=tRNA;logic_name=ncrna_eg scaffold_56 . exon 334165 334237 . - . ID=EPrPRAE00000000167;Parent=EPrPRAT00000000167;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 331891 333036 . - . ID=Phyra81148;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_56000093;logic_name=jgi_phyra1 scaffold_56 ensembl transcript 331891 333036 . - . ID=Phyra81148;Parent=Phyra81148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_56 . CDS 331891 331991 . - 0 ID=Phyra81148;Parent=Phyra81148;rank=4 scaffold_56 . exon 331891 331991 . - . ID=Phyra81148.4;Parent=Phyra81148;constitutive=1;ensembl_phase=1;rank=4 scaffold_56 . CDS 332077 332304 . - 0 ID=Phyra81148;Parent=Phyra81148;rank=3 scaffold_56 . exon 332077 332304 . - . ID=Phyra81148.3;Parent=Phyra81148;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_56 . CDS 332551 332862 . - 0 ID=Phyra81148;Parent=Phyra81148;rank=2 scaffold_56 . exon 332551 332862 . - . ID=Phyra81148.2;Parent=Phyra81148;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 332898 333036 . - 0 ID=Phyra81148;Parent=Phyra81148;rank=1 scaffold_56 . exon 332898 333036 . - . ID=Phyra81148.1;Parent=Phyra81148;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_55 1 338539 scaffold_55 . biological_region 825 827 0.999 - . logic_name=eponine scaffold_55 . biological_region 3196 3196 0.999 - . logic_name=eponine scaffold_55 . repeat_region 3976 3997 . ? . description=dust scaffold_55 . repeat_region 7847 7854 . ? . description=dust scaffold_55 ensembl protein_coding_gene 213 1025 . + . ID=Phyra80973;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000001;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 213 1025 . + . ID=Phyra80973;Parent=Phyra80973;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 213 227 . + 0 ID=Phyra80973;Parent=Phyra80973;rank=1 scaffold_55 . exon 213 227 . + . ID=Phyra80973.1;Parent=Phyra80973;constitutive=1;rank=1 scaffold_55 . CDS 248 365 . + 0 ID=Phyra80973;Parent=Phyra80973;rank=2 scaffold_55 . exon 248 365 . + . ID=Phyra80973.2;Parent=Phyra80973;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_55 . CDS 640 895 . + 0 ID=Phyra80973;Parent=Phyra80973;rank=3 scaffold_55 . exon 640 895 . + . ID=Phyra80973.3;Parent=Phyra80973;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_55 . CDS 932 1025 . + 0 ID=Phyra80973;Parent=Phyra80973;rank=4 scaffold_55 . exon 932 1025 . + . ID=Phyra80973.4;Parent=Phyra80973;constitutive=1;ensembl_phase=2;rank=4 scaffold_55 ensembl protein_coding_gene 9658 10365 . + . ID=Phyra95869;biotype=protein_coding;external_name=C_scaffold_55000001;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 9658 10365 . + . ID=Phyra95869;Parent=Phyra95869;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 9658 9987 . + 0 ID=Phyra95869;Parent=Phyra95869;rank=1 scaffold_55 . exon 9658 9987 . + . ID=Phyra95869.1;Parent=Phyra95869;constitutive=1;rank=1 scaffold_55 . CDS 10009 10365 . + 0 ID=Phyra95869;Parent=Phyra95869;rank=2 scaffold_55 ensembl protein_coding_gene 11906 12532 . - . ID=Phyra80975;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000003;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 11906 12532 . - . ID=Phyra80975;Parent=Phyra80975;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 11906 12532 . - 0 ID=Phyra80975;Parent=Phyra80975;rank=1 scaffold_55 . exon 11906 12532 . - . ID=Phyra80975.1;Parent=Phyra80975;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 15078 16397 . - . ID=Phyra80976;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000004;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 15078 16397 . - . ID=Phyra80976;Parent=Phyra80976;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 15078 16397 . - 0 ID=Phyra80976;Parent=Phyra80976;rank=1 scaffold_55 . exon 15078 16397 . - . ID=Phyra80976.1;Parent=Phyra80976;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 18425 19693 . - . ID=Phyra80977;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000005;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 18425 19693 . - . ID=Phyra80977;Parent=Phyra80977;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 18425 19693 . - 0 ID=Phyra80977;Parent=Phyra80977;rank=1 scaffold_55 . exon 18425 19693 . - . ID=Phyra80977.1;Parent=Phyra80977;constitutive=1;rank=1 scaffold_55 . exon 10009 10365 . + . ID=Phyra95869.2;Parent=Phyra95869;constitutive=1;rank=2 scaffold_55 . repeat_region 19996 20146 . ? . description=dust scaffold_55 . repeat_region 29475 29563 . ? . description=trf scaffold_55 . repeat_region 29489 29584 . ? . description=trf scaffold_55 . repeat_region 29512 29605 . ? . description=trf scaffold_55 . repeat_region 29512 29605 . ? . description=trf scaffold_55 . repeat_region 29512 29605 . ? . description=trf scaffold_55 . repeat_region 29529 29609 . ? . description=trf scaffold_55 . biological_region 29534 29539 0.999 - . logic_name=eponine scaffold_55 . repeat_region 29538 29605 . ? . description=trf scaffold_55 ensembl protein_coding_gene 21566 22834 . - . ID=Phyra80978;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000006;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 21566 22834 . - . ID=Phyra80978;Parent=Phyra80978;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 21566 22834 . - 0 ID=Phyra80978;Parent=Phyra80978;rank=1 scaffold_55 . exon 21566 22834 . - . ID=Phyra80978.1;Parent=Phyra80978;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 28652 33192 . + . ID=Phyra80979;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000007;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 28652 33192 . + . ID=Phyra80979;Parent=Phyra80979;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 28652 29033 . + 0 ID=Phyra80979;Parent=Phyra80979;rank=1 scaffold_55 . exon 28652 29033 . + . ID=Phyra80979.1;Parent=Phyra80979;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 29101 29174 . + 0 ID=Phyra80979;Parent=Phyra80979;rank=2 scaffold_55 . exon 29101 29174 . + . ID=Phyra80979.2;Parent=Phyra80979;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 29244 30088 . + 0 ID=Phyra80979;Parent=Phyra80979;rank=3 scaffold_55 . exon 29244 30088 . + . ID=Phyra80979.3;Parent=Phyra80979;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_55 . CDS 30440 30449 . + 0 ID=Phyra80979;Parent=Phyra80979;rank=4 scaffold_55 . CDS 30580 30607 . + 0 ID=Phyra80979;Parent=Phyra80979;rank=5 scaffold_55 . CDS 30706 31337 . + 0 ID=Phyra80979;Parent=Phyra80979;rank=6 scaffold_55 . CDS 31398 32257 . + 0 ID=Phyra80979;Parent=Phyra80979;rank=7 scaffold_55 . CDS 32327 32395 . + 0 ID=Phyra80979;Parent=Phyra80979;rank=8 scaffold_55 . CDS 32461 33083 . + 0 ID=Phyra80979;Parent=Phyra80979;rank=9 scaffold_55 . CDS 33188 33192 . + 0 ID=Phyra80979;Parent=Phyra80979;rank=10 scaffold_55 . exon 30440 30449 . + . ID=Phyra80979.4;Parent=Phyra80979;constitutive=1;ensembl_phase=2;rank=4 scaffold_55 . exon 30580 30607 . + . ID=Phyra80979.5;Parent=Phyra80979;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_55 . exon 30706 31337 . + . ID=Phyra80979.6;Parent=Phyra80979;constitutive=1;ensembl_phase=1;rank=6 scaffold_55 . exon 31398 32257 . + . ID=Phyra80979.7;Parent=Phyra80979;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_55 . exon 32327 32395 . + . ID=Phyra80979.8;Parent=Phyra80979;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_55 . exon 32461 33083 . + . ID=Phyra80979.9;Parent=Phyra80979;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_55 . exon 33188 33192 . + . ID=Phyra80979.10;Parent=Phyra80979;constitutive=1;ensembl_phase=1;rank=10 scaffold_55 ensembl protein_coding_gene 34032 36281 . + . ID=Phyra80980;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000008;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 34032 36281 . + . ID=Phyra80980;Parent=Phyra80980;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 34032 36281 . + 0 ID=Phyra80980;Parent=Phyra80980;rank=1 scaffold_55 . exon 34032 36281 . + . ID=Phyra80980.1;Parent=Phyra80980;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 36564 38254 . + . ID=Phyra80981;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000009;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 36564 38254 . + . ID=Phyra80981;Parent=Phyra80981;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 36564 37262 . + 0 ID=Phyra80981;Parent=Phyra80981;rank=1 scaffold_55 . exon 36564 37262 . + . ID=Phyra80981.1;Parent=Phyra80981;constitutive=1;rank=1 scaffold_55 . CDS 37322 37512 . + 0 ID=Phyra80981;Parent=Phyra80981;rank=2 scaffold_55 . exon 37322 37512 . + . ID=Phyra80981.2;Parent=Phyra80981;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_55 . CDS 37570 38254 . + 0 ID=Phyra80981;Parent=Phyra80981;rank=3 scaffold_55 . exon 37570 38254 . + . ID=Phyra80981.3;Parent=Phyra80981;constitutive=1;ensembl_phase=2;rank=3 scaffold_55 . biological_region 45562 45564 0.999 + . logic_name=eponine scaffold_55 . biological_region 45716 45719 0.999 - . logic_name=eponine scaffold_55 . repeat_region 45883 45903 . ? . description=trf scaffold_55 . repeat_region 48635 49903 . ? . description=dust scaffold_55 ensembl protein_coding_gene 44992 47487 . + . ID=Phyra80983;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000011;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 44992 47487 . + . ID=Phyra80983;Parent=Phyra80983;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 44992 47487 . + 0 ID=Phyra80983;Parent=Phyra80983;rank=1 scaffold_55 . exon 44992 47487 . + . ID=Phyra80983.1;Parent=Phyra80983;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 42212 42856 . - . ID=Phyra95873;biotype=protein_coding;external_name=C_scaffold_55000005;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 42212 42856 . - . ID=Phyra95873;Parent=Phyra95873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 42212 42633 . - 0 ID=Phyra95873;Parent=Phyra95873;rank=2 scaffold_55 . exon 42212 42633 . - . ID=Phyra95873.2;Parent=Phyra95873;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 42676 42856 . - 0 ID=Phyra95873;Parent=Phyra95873;rank=1 scaffold_55 . exon 42676 42856 . - . ID=Phyra95873.1;Parent=Phyra95873;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 ensembl protein_coding_gene 52717 60435 . + . ID=Phyra80984;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000012;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 52717 60435 . + . ID=Phyra80984;Parent=Phyra80984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 52717 60435 . + 0 ID=Phyra80984;Parent=Phyra80984;rank=1 scaffold_55 . exon 52717 60435 . + . ID=Phyra80984.1;Parent=Phyra80984;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 67393 76402 . - . ID=Phyra50699;biotype=protein_coding;external_name=gwEuk.55.69.1;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 67393 76402 . - . ID=Phyra50699;Parent=Phyra50699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 67393 69516 . - 0 ID=Phyra50699;Parent=Phyra50699;rank=4 scaffold_55 . exon 67393 69516 . - . ID=Phyra50699.4;Parent=Phyra50699;constitutive=1;rank=4 scaffold_55 . CDS 69637 70448 . - 0 ID=Phyra50699;Parent=Phyra50699;rank=3 scaffold_55 . exon 69637 70448 . - . ID=Phyra50699.3;Parent=Phyra50699;constitutive=1;ensembl_phase=1;rank=3 scaffold_55 . CDS 72708 75786 . - 0 ID=Phyra50699;Parent=Phyra50699;rank=2 scaffold_55 . CDS 75863 76402 . - 0 ID=Phyra50699;Parent=Phyra50699;rank=1 scaffold_55 . repeat_region 72229 72278 . ? . description=dust scaffold_55 . repeat_region 75803 75852 . ? . description=dust scaffold_55 . repeat_region 78128 78251 . ? . description=trf scaffold_55 . biological_region 78993 78998 0.999 + . logic_name=eponine scaffold_55 . biological_region 79045 79048 0.999 + . logic_name=eponine scaffold_55 . exon 72708 75786 . - . ID=Phyra50699.2;Parent=Phyra50699;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_55 . exon 75863 76402 . - . ID=Phyra50699.1;Parent=Phyra50699;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 76944 77570 . - . ID=Phyra71850;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_55000001;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 76944 77570 . - . ID=Phyra71850;Parent=Phyra71850;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 76944 77570 . - 0 ID=Phyra71850;Parent=Phyra71850;rank=1 scaffold_55 . exon 76944 77570 . - . ID=Phyra71850.1;Parent=Phyra71850;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 77808 79172 . + . ID=Phyra80987;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000015;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 77808 79172 . + . ID=Phyra80987;Parent=Phyra80987;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 77808 78681 . + 0 ID=Phyra80987;Parent=Phyra80987;rank=1 scaffold_55 . exon 77808 78681 . + . ID=Phyra80987.1;Parent=Phyra80987;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 78748 79172 . + 0 ID=Phyra80987;Parent=Phyra80987;rank=2 scaffold_55 . exon 78748 79172 . + . ID=Phyra80987.2;Parent=Phyra80987;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 ensembl protein_coding_gene 79598 80488 . + . ID=Phyra80988;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000016;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 79598 80488 . + . ID=Phyra80988;Parent=Phyra80988;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 79598 80488 . + 0 ID=Phyra80988;Parent=Phyra80988;rank=1 scaffold_55 . exon 79598 80488 . + . ID=Phyra80988.1;Parent=Phyra80988;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 82761 84071 . - . ID=Phyra80989;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000017;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 82761 84071 . - . ID=Phyra80989;Parent=Phyra80989;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 82761 84071 . - 0 ID=Phyra80989;Parent=Phyra80989;rank=1 scaffold_55 . exon 82761 84071 . - . ID=Phyra80989.1;Parent=Phyra80989;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 88455 89689 . + . ID=Phyra80990;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000018;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 88455 89689 . + . ID=Phyra80990;Parent=Phyra80990;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 88455 88800 . + 0 ID=Phyra80990;Parent=Phyra80990;rank=1 scaffold_55 . exon 88455 88800 . + . ID=Phyra80990.1;Parent=Phyra80990;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 89065 89304 . + 0 ID=Phyra80990;Parent=Phyra80990;rank=2 scaffold_55 . exon 89065 89304 . + . ID=Phyra80990.2;Parent=Phyra80990;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 89367 89689 . + 0 ID=Phyra80990;Parent=Phyra80990;rank=3 scaffold_55 . exon 89367 89689 . + . ID=Phyra80990.3;Parent=Phyra80990;constitutive=1;ensembl_phase=1;rank=3 scaffold_55 . biological_region 93623 93623 0.999 + . logic_name=eponine scaffold_55 . biological_region 93664 93670 0.999 + . logic_name=eponine scaffold_55 . biological_region 93684 93690 0.999 + . logic_name=eponine scaffold_55 . biological_region 93714 93718 0.999 - . logic_name=eponine scaffold_55 . biological_region 93733 93736 0.999 - . logic_name=eponine scaffold_55 . biological_region 93757 93760 0.999 - . logic_name=eponine scaffold_55 . repeat_region 97227 97243 . ? . description=dust scaffold_55 . biological_region 97888 97890 0.999 - . logic_name=eponine scaffold_55 . repeat_region 98316 98341 . ? . description=trf scaffold_55 . repeat_region 99440 99447 . ? . description=dust scaffold_55 ensembl protein_coding_gene 93545 93982 . + . ID=Phyra71851;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_55000002;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 93545 93982 . + . ID=Phyra71851;Parent=Phyra71851;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 93545 93982 . + 0 ID=Phyra71851;Parent=Phyra71851;rank=1 scaffold_55 . exon 93545 93982 . + . ID=Phyra71851.1;Parent=Phyra71851;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 97285 97881 . - . ID=Phyra71852;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_55000003;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 97285 97881 . - . ID=Phyra71852;Parent=Phyra71852;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 97285 97881 . - 0 ID=Phyra71852;Parent=Phyra71852;rank=1 scaffold_55 . exon 97285 97881 . - . ID=Phyra71852.1;Parent=Phyra71852;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 98689 99285 . + . ID=Phyra71853;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_55000004;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 98689 99285 . + . ID=Phyra71853;Parent=Phyra71853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 98689 99285 . + 0 ID=Phyra71853;Parent=Phyra71853;rank=1 scaffold_55 . exon 98689 99285 . + . ID=Phyra71853.1;Parent=Phyra71853;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 91599 93239 . - . ID=Phyra80991;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000019;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 91599 93239 . - . ID=Phyra80991;Parent=Phyra80991;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 91599 93239 . - 0 ID=Phyra80991;Parent=Phyra80991;rank=1 scaffold_55 . exon 91599 93239 . - . ID=Phyra80991.1;Parent=Phyra80991;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 101762 102358 . - . ID=Phyra71854;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_55000005;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 101762 102358 . - . ID=Phyra71854;Parent=Phyra71854;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 101762 102358 . - 0 ID=Phyra71854;Parent=Phyra71854;rank=1 scaffold_55 . exon 101762 102358 . - . ID=Phyra71854.1;Parent=Phyra71854;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 102906 103220 . + . ID=Phyra71855;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_55000006;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 102906 103220 . + . ID=Phyra71855;Parent=Phyra71855;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 102906 103220 . + 0 ID=Phyra71855;Parent=Phyra71855;rank=1 scaffold_55 . exon 102906 103220 . + . ID=Phyra71855.1;Parent=Phyra71855;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 100165 101595 . + . ID=Phyra80995;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000023;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 100165 101595 . + . ID=Phyra80995;Parent=Phyra80995;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 100165 101595 . + 0 ID=Phyra80995;Parent=Phyra80995;rank=1 scaffold_55 . exon 100165 101595 . + . ID=Phyra80995.1;Parent=Phyra80995;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 104528 106236 . + . ID=Phyra80998;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000026;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 104528 106236 . + . ID=Phyra80998;Parent=Phyra80998;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 104528 104684 . + 0 ID=Phyra80998;Parent=Phyra80998;rank=1 scaffold_55 . exon 104528 104684 . + . ID=Phyra80998.1;Parent=Phyra80998;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 104753 105901 . + 0 ID=Phyra80998;Parent=Phyra80998;rank=2 scaffold_55 . exon 104753 105901 . + . ID=Phyra80998.2;Parent=Phyra80998;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 105975 106016 . + 0 ID=Phyra80998;Parent=Phyra80998;rank=3 scaffold_55 . exon 105975 106016 . + . ID=Phyra80998.3;Parent=Phyra80998;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_55 . CDS 106097 106236 . + 0 ID=Phyra80998;Parent=Phyra80998;rank=4 scaffold_55 . exon 106097 106236 . + . ID=Phyra80998.4;Parent=Phyra80998;constitutive=1;ensembl_phase=1;rank=4 scaffold_55 ensembl protein_coding_gene 106402 108001 . - . ID=Phyra80999;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000027;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 106402 108001 . - . ID=Phyra80999;Parent=Phyra80999;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 106402 107541 . - 0 ID=Phyra80999;Parent=Phyra80999;rank=3 scaffold_55 . exon 106402 107541 . - . ID=Phyra80999.3;Parent=Phyra80999;constitutive=1;rank=3 scaffold_55 . CDS 107585 107686 . - 0 ID=Phyra80999;Parent=Phyra80999;rank=2 scaffold_55 . exon 107585 107686 . - . ID=Phyra80999.2;Parent=Phyra80999;constitutive=1;rank=2 scaffold_55 . CDS 107765 108001 . - 0 ID=Phyra80999;Parent=Phyra80999;rank=1 scaffold_55 . exon 107765 108001 . - . ID=Phyra80999.1;Parent=Phyra80999;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 109186 109620 . + . ID=Phyra81000;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000028;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 109186 109620 . + . ID=Phyra81000;Parent=Phyra81000;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 109186 109620 . + 0 ID=Phyra81000;Parent=Phyra81000;rank=1 scaffold_55 . exon 109186 109620 . + . ID=Phyra81000.1;Parent=Phyra81000;constitutive=1;rank=1 scaffold_55 . biological_region 114769 114770 0.999 - . logic_name=eponine scaffold_55 . repeat_region 116718 116725 . ? . description=dust scaffold_55 . repeat_region 117174 117194 . ? . description=trf scaffold_55 . repeat_region 117174 117194 . ? . description=dust scaffold_55 ensembl protein_coding_gene 119858 123159 . + . ID=Phyra81001;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000029;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 119858 123159 . + . ID=Phyra81001;Parent=Phyra81001;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 119858 119929 . + 0 ID=Phyra81001;Parent=Phyra81001;rank=1 scaffold_55 . exon 119858 119929 . + . ID=Phyra81001.1;Parent=Phyra81001;constitutive=1;rank=1 scaffold_55 . CDS 120021 120126 . + 0 ID=Phyra81001;Parent=Phyra81001;rank=2 scaffold_55 . exon 120021 120126 . + . ID=Phyra81001.2;Parent=Phyra81001;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_55 . CDS 120249 120641 . + 0 ID=Phyra81001;Parent=Phyra81001;rank=3 scaffold_55 . exon 120249 120641 . + . ID=Phyra81001.3;Parent=Phyra81001;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_55 . CDS 120749 121015 . + 0 ID=Phyra81001;Parent=Phyra81001;rank=4 scaffold_55 . exon 120749 121015 . + . ID=Phyra81001.4;Parent=Phyra81001;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_55 . CDS 121083 122135 . + 0 ID=Phyra81001;Parent=Phyra81001;rank=5 scaffold_55 . exon 121083 122135 . + . ID=Phyra81001.5;Parent=Phyra81001;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_55 . CDS 122423 123159 . + 0 ID=Phyra81001;Parent=Phyra81001;rank=6 scaffold_55 . exon 122423 123159 . + . ID=Phyra81001.6;Parent=Phyra81001;constitutive=1;ensembl_phase=1;rank=6 scaffold_55 ensembl protein_coding_gene 126929 128311 . - . ID=Phyra81002;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000030;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 126929 128311 . - . ID=Phyra81002;Parent=Phyra81002;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 126929 128311 . - 0 ID=Phyra81002;Parent=Phyra81002;rank=1 scaffold_55 . exon 126929 128311 . - . ID=Phyra81002.1;Parent=Phyra81002;constitutive=1;rank=1 scaffold_55 . biological_region 129820 129823 0.999 + . logic_name=eponine scaffold_55 . biological_region 130269 130276 0.999 - . logic_name=eponine scaffold_55 . biological_region 130314 130319 0.999 - . logic_name=eponine scaffold_55 . biological_region 131029 131033 0.999 - . logic_name=eponine scaffold_55 . biological_region 131189 131192 0.999 + . logic_name=eponine scaffold_55 . biological_region 131630 131632 0.999 + . logic_name=eponine scaffold_55 . repeat_region 132003 132049 . ? . description=dust scaffold_55 . repeat_region 132020 132047 . ? . description=trf scaffold_55 . biological_region 135199 135202 0.999 - . logic_name=eponine scaffold_55 . biological_region 138060 138064 0.999 - . logic_name=eponine scaffold_55 . repeat_region 138699 138719 . ? . description=trf scaffold_55 . repeat_region 138699 138719 . ? . description=dust scaffold_55 . repeat_region 138814 138821 . ? . description=dust scaffold_55 . repeat_region 139386 139397 . ? . description=dust scaffold_55 ensembl protein_coding_gene 129594 132020 . - . ID=Phyra81003;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000031;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 129594 132020 . - . ID=Phyra81003;Parent=Phyra81003;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 129594 132020 . - 0 ID=Phyra81003;Parent=Phyra81003;rank=1 scaffold_55 . exon 129594 132020 . - . ID=Phyra81003.1;Parent=Phyra81003;constitutive=1;rank=1 scaffold_55 . repeat_region 152535 152542 . ? . description=dust scaffold_55 . repeat_region 153939 153955 . ? . description=dust scaffold_55 . repeat_region 155699 158153 . ? . description=dust scaffold_55 . biological_region 158783 158786 0.999 - . logic_name=eponine scaffold_55 ensembl protein_coding_gene 159378 162637 . - . ID=Phyra81004;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000032;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 159378 162637 . - . ID=Phyra81004;Parent=Phyra81004;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 159378 161194 . - 0 ID=Phyra81004;Parent=Phyra81004;rank=6 scaffold_55 . exon 159378 161194 . - . ID=Phyra81004.6;Parent=Phyra81004;constitutive=1;ensembl_phase=1;rank=6 scaffold_55 . CDS 161226 161266 . - 0 ID=Phyra81004;Parent=Phyra81004;rank=5 scaffold_55 . exon 161226 161266 . - . ID=Phyra81004.5;Parent=Phyra81004;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_55 . CDS 161587 161693 . - 0 ID=Phyra81004;Parent=Phyra81004;rank=4 scaffold_55 . exon 161587 161693 . - . ID=Phyra81004.4;Parent=Phyra81004;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_55 . CDS 161894 162217 . - 0 ID=Phyra81004;Parent=Phyra81004;rank=3 scaffold_55 . exon 161894 162217 . - . ID=Phyra81004.3;Parent=Phyra81004;constitutive=1;rank=3 scaffold_55 . CDS 162391 162415 . - 0 ID=Phyra81004;Parent=Phyra81004;rank=2 scaffold_55 . exon 162391 162415 . - . ID=Phyra81004.2;Parent=Phyra81004;constitutive=1;ensembl_phase=2;rank=2 scaffold_55 . CDS 162546 162637 . - 0 ID=Phyra81004;Parent=Phyra81004;rank=1 scaffold_55 . exon 162546 162637 . - . ID=Phyra81004.1;Parent=Phyra81004;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . repeat_region 169612 169621 . ? . description=dust scaffold_55 . repeat_region 174673 174680 . ? . description=dust scaffold_55 . repeat_region 175304 175321 . ? . description=dust scaffold_55 ensembl protein_coding_gene 178008 179453 . - . ID=Phyra81005;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000033;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 178008 179453 . - . ID=Phyra81005;Parent=Phyra81005;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 178008 179453 . - 0 ID=Phyra81005;Parent=Phyra81005;rank=1 scaffold_55 . exon 178008 179453 . - . ID=Phyra81005.1;Parent=Phyra81005;constitutive=1;rank=1 scaffold_55 . repeat_region 179849 179928 . ? . description=trf scaffold_55 . biological_region 186810 186812 0.999 + . logic_name=eponine scaffold_55 ensembl protein_coding_gene 180880 182901 . - . ID=Phyra81006;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000034;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 180880 182901 . - . ID=Phyra81006;Parent=Phyra81006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 180880 182901 . - 0 ID=Phyra81006;Parent=Phyra81006;rank=1 scaffold_55 . exon 180880 182901 . - . ID=Phyra81006.1;Parent=Phyra81006;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 183982 186939 . - . ID=Phyra81007;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000035;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 183982 186939 . - . ID=Phyra81007;Parent=Phyra81007;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 183982 186939 . - 0 ID=Phyra81007;Parent=Phyra81007;rank=1 scaffold_55 . exon 183982 186939 . - . ID=Phyra81007.1;Parent=Phyra81007;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 187068 187457 . + . ID=Phyra81008;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000036;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 187068 187457 . + . ID=Phyra81008;Parent=Phyra81008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 187068 187457 . + 0 ID=Phyra81008;Parent=Phyra81008;rank=1 scaffold_55 . exon 187068 187457 . + . ID=Phyra81008.1;Parent=Phyra81008;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 187770 191446 . - . ID=Phyra81009;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000037;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 187770 191446 . - . ID=Phyra81009;Parent=Phyra81009;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 187770 187773 . - 0 ID=Phyra81009;Parent=Phyra81009;rank=4 scaffold_55 . exon 187770 187773 . - . ID=Phyra81009.4;Parent=Phyra81009;constitutive=1;ensembl_phase=2;rank=4 scaffold_55 . CDS 187912 188198 . - 0 ID=Phyra81009;Parent=Phyra81009;rank=3 scaffold_55 . exon 187912 188198 . - . ID=Phyra81009.3;Parent=Phyra81009;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_55 . CDS 188900 190632 . - 0 ID=Phyra81009;Parent=Phyra81009;rank=2 scaffold_55 . exon 188900 190632 . - . ID=Phyra81009.2;Parent=Phyra81009;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 190672 191446 . - 0 ID=Phyra81009;Parent=Phyra81009;rank=1 scaffold_55 . repeat_region 193602 193614 . ? . description=dust scaffold_55 ensembl protein_coding_gene 193629 194715 . + . ID=Phyra71856;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_55000007;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 193629 194715 . + . ID=Phyra71856;Parent=Phyra71856;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 193629 193695 . + 0 ID=Phyra71856;Parent=Phyra71856;rank=1 scaffold_55 . exon 193629 193695 . + . ID=Phyra71856.1;Parent=Phyra71856;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 193754 194715 . + 0 ID=Phyra71856;Parent=Phyra71856;rank=2 scaffold_55 . exon 193754 194715 . + . ID=Phyra71856.2;Parent=Phyra71856;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . exon 190672 191446 . - . ID=Phyra81009.1;Parent=Phyra81009;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 ensembl protein_coding_gene 194912 195612 . + . ID=Phyra81011;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000039;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 194912 195612 . + . ID=Phyra81011;Parent=Phyra81011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 194912 195160 . + 0 ID=Phyra81011;Parent=Phyra81011;rank=1 scaffold_55 . exon 194912 195160 . + . ID=Phyra81011.1;Parent=Phyra81011;constitutive=1;rank=1 scaffold_55 . CDS 195250 195293 . + 0 ID=Phyra81011;Parent=Phyra81011;rank=2 scaffold_55 . exon 195250 195293 . + . ID=Phyra81011.2;Parent=Phyra81011;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_55 . CDS 195351 195612 . + 0 ID=Phyra81011;Parent=Phyra81011;rank=3 scaffold_55 . exon 195351 195612 . + . ID=Phyra81011.3;Parent=Phyra81011;constitutive=1;ensembl_phase=2;rank=3 scaffold_55 ensembl protein_coding_gene 195650 196039 . - . ID=Phyra81012;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000040;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 195650 196039 . - . ID=Phyra81012;Parent=Phyra81012;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 195650 196039 . - 0 ID=Phyra81012;Parent=Phyra81012;rank=1 scaffold_55 . exon 195650 196039 . - . ID=Phyra81012.1;Parent=Phyra81012;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 196462 198774 . + . ID=Phyra81013;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000041;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 196462 198774 . + . ID=Phyra81013;Parent=Phyra81013;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 196462 198774 . + 0 ID=Phyra81013;Parent=Phyra81013;rank=1 scaffold_55 . exon 196462 198774 . + . ID=Phyra81013.1;Parent=Phyra81013;constitutive=1;rank=1 scaffold_55 . biological_region 199745 199751 0.999 - . logic_name=eponine scaffold_55 . biological_region 199756 199759 0.999 - . logic_name=eponine scaffold_55 . biological_region 199829 199841 0.999 + . logic_name=eponine scaffold_55 . biological_region 199865 199870 0.999 + . logic_name=eponine scaffold_55 . biological_region 199904 199909 0.999 - . logic_name=eponine scaffold_55 . repeat_region 206011 206051 . ? . description=trf scaffold_55 . biological_region 206114 206116 0.999 + . logic_name=eponine scaffold_55 ensembl protein_coding_gene 199669 201027 . + . ID=Phyra81014;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000042;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 199669 201027 . + . ID=Phyra81014;Parent=Phyra81014;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 199669 201027 . + 0 ID=Phyra81014;Parent=Phyra81014;rank=1 scaffold_55 . exon 199669 201027 . + . ID=Phyra81014.1;Parent=Phyra81014;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 201098 205740 . - . ID=Phyra81015;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000043;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 201098 205740 . - . ID=Phyra81015;Parent=Phyra81015;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 201098 201969 . - 0 ID=Phyra81015;Parent=Phyra81015;rank=3 scaffold_55 . exon 201098 201969 . - . ID=Phyra81015.3;Parent=Phyra81015;constitutive=1;ensembl_phase=1;rank=3 scaffold_55 . CDS 202303 203273 . - 0 ID=Phyra81015;Parent=Phyra81015;rank=2 scaffold_55 . exon 202303 203273 . - . ID=Phyra81015.2;Parent=Phyra81015;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_55 . CDS 203615 205740 . - 0 ID=Phyra81015;Parent=Phyra81015;rank=1 scaffold_55 . exon 203615 205740 . - . ID=Phyra81015.1;Parent=Phyra81015;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 ensembl protein_coding_gene 207622 210324 . - . ID=Phyra81016;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000044;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 207622 210324 . - . ID=Phyra81016;Parent=Phyra81016;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 207622 207738 . - 0 ID=Phyra81016;Parent=Phyra81016;rank=3 scaffold_55 . exon 207622 207738 . - . ID=Phyra81016.3;Parent=Phyra81016;constitutive=1;rank=3 scaffold_55 . CDS 207829 209947 . - 0 ID=Phyra81016;Parent=Phyra81016;rank=2 scaffold_55 . exon 207829 209947 . - . ID=Phyra81016.2;Parent=Phyra81016;constitutive=1;ensembl_phase=2;rank=2 scaffold_55 . CDS 210302 210324 . - 0 ID=Phyra81016;Parent=Phyra81016;rank=1 scaffold_55 . repeat_region 211186 217931 . ? . description=dust scaffold_55 . exon 210302 210324 . - . ID=Phyra81016.1;Parent=Phyra81016;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . biological_region 219976 219977 0.999 + . logic_name=eponine scaffold_55 . biological_region 226866 226867 0.999 + . logic_name=eponine scaffold_55 . biological_region 226893 226895 0.999 - . logic_name=eponine scaffold_55 . biological_region 226925 226929 0.999 - . logic_name=eponine scaffold_55 . repeat_region 227295 227383 . ? . description=trf scaffold_55 ensembl protein_coding_gene 226764 228587 . + . ID=Phyra81017;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000045;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 226764 228587 . + . ID=Phyra81017;Parent=Phyra81017;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 226764 228587 . + 0 ID=Phyra81017;Parent=Phyra81017;rank=1 scaffold_55 . exon 226764 228587 . + . ID=Phyra81017.1;Parent=Phyra81017;constitutive=1;rank=1 scaffold_55 . repeat_region 230213 230233 . ? . description=dust scaffold_55 . repeat_region 230385 230392 . ? . description=dust scaffold_55 . repeat_region 230562 230611 . ? . description=dust scaffold_55 . repeat_region 230904 230915 . ? . description=dust scaffold_55 ensembl protein_coding_gene 229149 229733 . - . ID=Phyra81018;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000046;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 229149 229733 . - . ID=Phyra81018;Parent=Phyra81018;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 229149 229733 . - 0 ID=Phyra81018;Parent=Phyra81018;rank=1 scaffold_55 . exon 229149 229733 . - . ID=Phyra81018.1;Parent=Phyra81018;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 231405 231959 . + . ID=Phyra81019;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000047;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 231405 231959 . + . ID=Phyra81019;Parent=Phyra81019;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 231405 231959 . + 0 ID=Phyra81019;Parent=Phyra81019;rank=1 scaffold_55 . exon 231405 231959 . + . ID=Phyra81019.1;Parent=Phyra81019;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 232379 233617 . + . ID=Phyra81020;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000048;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 232379 233617 . + . ID=Phyra81020;Parent=Phyra81020;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 232379 233617 . + 0 ID=Phyra81020;Parent=Phyra81020;rank=1 scaffold_55 . exon 232379 233617 . + . ID=Phyra81020.1;Parent=Phyra81020;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 234101 235930 . + . ID=Phyra81021;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000049;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 234101 235930 . + . ID=Phyra81021;Parent=Phyra81021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 234101 235930 . + 0 ID=Phyra81021;Parent=Phyra81021;rank=1 scaffold_55 . exon 234101 235930 . + . ID=Phyra81021.1;Parent=Phyra81021;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 237628 240774 . + . ID=Phyra81022;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000050;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 237628 240774 . + . ID=Phyra81022;Parent=Phyra81022;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 237628 239741 . + 0 ID=Phyra81022;Parent=Phyra81022;rank=1 scaffold_55 . exon 237628 239741 . + . ID=Phyra81022.1;Parent=Phyra81022;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . CDS 239790 240774 . + 0 ID=Phyra81022;Parent=Phyra81022;rank=2 scaffold_55 . repeat_region 241255 241385 . ? . description=trf scaffold_55 . repeat_region 241317 241532 . ? . description=trf scaffold_55 . repeat_region 241503 241609 . ? . description=trf scaffold_55 . repeat_region 241514 241546 . ? . description=trf scaffold_55 . biological_region 244169 244171 0.999 - . logic_name=eponine scaffold_55 . biological_region 245464 245472 0.999 + . logic_name=eponine scaffold_55 . biological_region 245515 245516 0.999 + . logic_name=eponine scaffold_55 . biological_region 245528 245534 0.999 + . logic_name=eponine scaffold_55 . repeat_region 246607 247529 . ? . description=trf scaffold_55 ensembl protein_coding_gene 242464 243739 . + . ID=Phyra71857;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_55000008;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 242464 243739 . + . ID=Phyra71857;Parent=Phyra71857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 242464 242518 . + 0 ID=Phyra71857;Parent=Phyra71857;rank=1 scaffold_55 . exon 242464 242518 . + . ID=Phyra71857.1;Parent=Phyra71857;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 242640 243739 . + 0 ID=Phyra71857;Parent=Phyra71857;rank=2 scaffold_55 . exon 242640 243739 . + . ID=Phyra71857.2;Parent=Phyra71857;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . exon 239790 240774 . + . ID=Phyra81022.2;Parent=Phyra81022;constitutive=1;ensembl_phase=2;rank=2 scaffold_55 ensembl protein_coding_gene 241115 241813 . - . ID=Phyra81023;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000051;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 241115 241813 . - . ID=Phyra81023;Parent=Phyra81023;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 241115 241813 . - 0 ID=Phyra81023;Parent=Phyra81023;rank=1 scaffold_55 . exon 241115 241813 . - . ID=Phyra81023.1;Parent=Phyra81023;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 243976 244503 . - . ID=Phyra81025;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000053;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 243976 244503 . - . ID=Phyra81025;Parent=Phyra81025;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 243976 244503 . - 0 ID=Phyra81025;Parent=Phyra81025;rank=1 scaffold_55 . exon 243976 244503 . - . ID=Phyra81025.1;Parent=Phyra81025;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 245406 247856 . + . ID=Phyra95878;biotype=protein_coding;external_name=C_scaffold_55000010;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 245406 247856 . + . ID=Phyra95878;Parent=Phyra95878;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 245406 245867 . + 0 ID=Phyra95878;Parent=Phyra95878;rank=1 scaffold_55 . exon 245406 245867 . + . ID=Phyra95878.1;Parent=Phyra95878;constitutive=1;rank=1 scaffold_55 . CDS 245940 246017 . + 0 ID=Phyra95878;Parent=Phyra95878;rank=2 scaffold_55 . exon 245940 246017 . + . ID=Phyra95878.2;Parent=Phyra95878;constitutive=1;rank=2 scaffold_55 . CDS 246048 246518 . + 0 ID=Phyra95878;Parent=Phyra95878;rank=3 scaffold_55 . exon 246048 246518 . + . ID=Phyra95878.3;Parent=Phyra95878;constitutive=1;rank=3 scaffold_55 . CDS 246543 247856 . + 0 ID=Phyra95878;Parent=Phyra95878;rank=4 scaffold_55 . exon 246543 247856 . + . ID=Phyra95878.4;Parent=Phyra95878;constitutive=1;rank=4 scaffold_55 ensembl protein_coding_gene 248192 249137 . + . ID=Phyra95879;biotype=protein_coding;external_name=C_scaffold_55000011;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 248192 249137 . + . ID=Phyra95879;Parent=Phyra95879;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 248192 248402 . + 0 ID=Phyra95879;Parent=Phyra95879;rank=1 scaffold_55 . exon 248192 248402 . + . ID=Phyra95879.1;Parent=Phyra95879;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 248475 249091 . + 0 ID=Phyra95879;Parent=Phyra95879;rank=2 scaffold_55 . exon 248475 249091 . + . ID=Phyra95879.2;Parent=Phyra95879;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 249120 249137 . + 0 ID=Phyra95879;Parent=Phyra95879;rank=3 scaffold_55 ensembl protein_coding_gene 250409 251157 . + . ID=Phyra81028;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000056;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 250409 251157 . + . ID=Phyra81028;Parent=Phyra81028;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 250409 250435 . + 0 ID=Phyra81028;Parent=Phyra81028;rank=1 scaffold_55 . exon 250409 250435 . + . ID=Phyra81028.1;Parent=Phyra81028;constitutive=1;rank=1 scaffold_55 . CDS 250534 251157 . + 0 ID=Phyra81028;Parent=Phyra81028;rank=2 scaffold_55 . exon 250534 251157 . + . ID=Phyra81028.2;Parent=Phyra81028;constitutive=1;rank=2 scaffold_55 ensembl protein_coding_gene 251500 252517 . + . ID=Phyra81029;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000057;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 251500 252517 . + . ID=Phyra81029;Parent=Phyra81029;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 251500 252053 . + 0 ID=Phyra81029;Parent=Phyra81029;rank=1 scaffold_55 . exon 251500 252053 . + . ID=Phyra81029.1;Parent=Phyra81029;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . CDS 252122 252187 . + 0 ID=Phyra81029;Parent=Phyra81029;rank=2 scaffold_55 . exon 252122 252187 . + . ID=Phyra81029.2;Parent=Phyra81029;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_55 . CDS 252283 252517 . + 0 ID=Phyra81029;Parent=Phyra81029;rank=3 scaffold_55 . exon 252283 252517 . + . ID=Phyra81029.3;Parent=Phyra81029;constitutive=1;ensembl_phase=2;rank=3 scaffold_55 ensembl protein_coding_gene 252970 253887 . - . ID=Phyra81030;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000058;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 252970 253887 . - . ID=Phyra81030;Parent=Phyra81030;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 252970 253887 . - 0 ID=Phyra81030;Parent=Phyra81030;rank=1 scaffold_55 . exon 252970 253887 . - . ID=Phyra81030.1;Parent=Phyra81030;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 254117 255286 . - . ID=Phyra81031;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000059;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 254117 255286 . - . ID=Phyra81031;Parent=Phyra81031;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 254117 255286 . - 0 ID=Phyra81031;Parent=Phyra81031;rank=1 scaffold_55 . exon 254117 255286 . - . ID=Phyra81031.1;Parent=Phyra81031;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 257142 258302 . + . ID=Phyra81032;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000060;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 257142 258302 . + . ID=Phyra81032;Parent=Phyra81032;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 257142 258302 . + 0 ID=Phyra81032;Parent=Phyra81032;rank=1 scaffold_55 . exon 257142 258302 . + . ID=Phyra81032.1;Parent=Phyra81032;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 258715 259881 . + . ID=Phyra81033;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000061;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 258715 259881 . + . ID=Phyra81033;Parent=Phyra81033;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 258715 259881 . + 0 ID=Phyra81033;Parent=Phyra81033;rank=1 scaffold_55 . exon 258715 259881 . + . ID=Phyra81033.1;Parent=Phyra81033;constitutive=1;rank=1 scaffold_55 . exon 249120 249137 . + . ID=Phyra95879.3;Parent=Phyra95879;constitutive=1;rank=3 scaffold_55 . biological_region 259815 259817 0.999 + . logic_name=eponine scaffold_55 . biological_region 261785 261786 0.999 - . logic_name=eponine scaffold_55 . biological_region 261789 261792 0.999 + . logic_name=eponine scaffold_55 . repeat_region 263174 263195 . ? . description=trf scaffold_55 ensembl protein_coding_gene 266386 268575 . + . ID=Phyra50648;biotype=protein_coding;external_name=gwEuk.55.18.1;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 266386 268575 . + . ID=Phyra50648;Parent=Phyra50648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 266386 266563 . + 0 ID=Phyra50648;Parent=Phyra50648;rank=1 scaffold_55 . exon 266386 266563 . + . ID=Phyra50648.1;Parent=Phyra50648;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 266621 266782 . + 0 ID=Phyra50648;Parent=Phyra50648;rank=2 scaffold_55 . exon 266621 266782 . + . ID=Phyra50648.2;Parent=Phyra50648;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 266864 267668 . + 0 ID=Phyra50648;Parent=Phyra50648;rank=3 scaffold_55 . exon 266864 267668 . + . ID=Phyra50648.3;Parent=Phyra50648;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_55 . CDS 268176 268575 . + 0 ID=Phyra50648;Parent=Phyra50648;rank=4 scaffold_55 . exon 268176 268575 . + . ID=Phyra50648.4;Parent=Phyra50648;constitutive=1;ensembl_phase=2;rank=4 scaffold_55 ensembl protein_coding_gene 260355 265189 . + . ID=Phyra81034;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000062;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 260355 265189 . + . ID=Phyra81034;Parent=Phyra81034;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 260355 260897 . + 0 ID=Phyra81034;Parent=Phyra81034;rank=1 scaffold_55 . exon 260355 260897 . + . ID=Phyra81034.1;Parent=Phyra81034;constitutive=1;rank=1 scaffold_55 . CDS 260971 261184 . + 0 ID=Phyra81034;Parent=Phyra81034;rank=2 scaffold_55 . exon 260971 261184 . + . ID=Phyra81034.2;Parent=Phyra81034;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_55 . CDS 261253 261885 . + 0 ID=Phyra81034;Parent=Phyra81034;rank=3 scaffold_55 . exon 261253 261885 . + . ID=Phyra81034.3;Parent=Phyra81034;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_55 . CDS 262329 263425 . + 0 ID=Phyra81034;Parent=Phyra81034;rank=4 scaffold_55 . exon 262329 263425 . + . ID=Phyra81034.4;Parent=Phyra81034;constitutive=1;ensembl_phase=1;rank=4 scaffold_55 . CDS 263718 263744 . + 0 ID=Phyra81034;Parent=Phyra81034;rank=5 scaffold_55 . exon 263718 263744 . + . ID=Phyra81034.5;Parent=Phyra81034;constitutive=1;rank=5 scaffold_55 . CDS 264086 265189 . + 0 ID=Phyra81034;Parent=Phyra81034;rank=6 scaffold_55 . exon 264086 265189 . + . ID=Phyra81034.6;Parent=Phyra81034;constitutive=1;rank=6 scaffold_55 . repeat_region 268906 268923 . ? . description=dust scaffold_55 . repeat_region 278383 278390 . ? . description=dust scaffold_55 ensembl protein_coding_gene 272077 273756 . + . ID=Phyra50660;biotype=protein_coding;external_name=gwEuk.55.30.1;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 272077 273756 . + . ID=Phyra50660;Parent=Phyra50660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 272077 273756 . + 0 ID=Phyra50660;Parent=Phyra50660;rank=1 scaffold_55 . exon 272077 273756 . + . ID=Phyra50660.1;Parent=Phyra50660;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 270893 271729 . - . ID=Phyra71858;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_55000009;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 270893 271729 . - . ID=Phyra71858;Parent=Phyra71858;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 270893 271272 . - 0 ID=Phyra71858;Parent=Phyra71858;rank=2 scaffold_55 . exon 270893 271272 . - . ID=Phyra71858.2;Parent=Phyra71858;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 271330 271729 . - 0 ID=Phyra71858;Parent=Phyra71858;rank=1 scaffold_55 . exon 271330 271729 . - . ID=Phyra71858.1;Parent=Phyra71858;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 ensembl protein_coding_gene 268939 269423 . - . ID=Phyra81035;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000063;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 268939 269423 . - . ID=Phyra81035;Parent=Phyra81035;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 268939 269048 . - 0 ID=Phyra81035;Parent=Phyra81035;rank=3 scaffold_55 . exon 268939 269048 . - . ID=Phyra81035.3;Parent=Phyra81035;constitutive=1;ensembl_phase=1;rank=3 scaffold_55 . CDS 269117 269207 . - 0 ID=Phyra81035;Parent=Phyra81035;rank=2 scaffold_55 . exon 269117 269207 . - . ID=Phyra81035.2;Parent=Phyra81035;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_55 . CDS 269274 269423 . - 0 ID=Phyra81035;Parent=Phyra81035;rank=1 scaffold_55 . exon 269274 269423 . - . ID=Phyra81035.1;Parent=Phyra81035;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 269527 270783 . + . ID=Phyra81036;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000064;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 269527 270783 . + . ID=Phyra81036;Parent=Phyra81036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 269527 270783 . + 0 ID=Phyra81036;Parent=Phyra81036;rank=1 scaffold_55 . exon 269527 270783 . + . ID=Phyra81036.1;Parent=Phyra81036;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 277292 278179 . + . ID=Phyra81039;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000067;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 277292 278179 . + . ID=Phyra81039;Parent=Phyra81039;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 277292 278179 . + 0 ID=Phyra81039;Parent=Phyra81039;rank=1 scaffold_55 . exon 277292 278179 . + . ID=Phyra81039.1;Parent=Phyra81039;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 278534 288310 . - . ID=Phyra81040;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000068;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 278534 288310 . - . ID=Phyra81040;Parent=Phyra81040;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 278534 288310 . - 0 ID=Phyra81040;Parent=Phyra81040;rank=1 scaffold_55 . exon 278534 288310 . - . ID=Phyra81040.1;Parent=Phyra81040;constitutive=1;rank=1 scaffold_55 . biological_region 283488 283488 0.999 + . logic_name=eponine scaffold_55 . biological_region 285480 285484 0.999 + . logic_name=eponine scaffold_55 . biological_region 287915 287918 0.999 + . logic_name=eponine scaffold_55 . repeat_region 296273 296327 . ? . description=trf scaffold_55 . repeat_region 296274 296326 . ? . description=trf scaffold_55 . repeat_region 296274 296327 . ? . description=trf scaffold_55 ensembl protein_coding_gene 290669 291108 . - . ID=Phyra71859;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_55000010;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 290669 291108 . - . ID=Phyra71859;Parent=Phyra71859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 290669 290937 . - 0 ID=Phyra71859;Parent=Phyra71859;rank=2 scaffold_55 . exon 290669 290937 . - . ID=Phyra71859.2;Parent=Phyra71859;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 291024 291108 . - 0 ID=Phyra71859;Parent=Phyra71859;rank=1 scaffold_55 . exon 291024 291108 . - . ID=Phyra71859.1;Parent=Phyra71859;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 ensembl protein_coding_gene 291394 292863 . - . ID=Phyra81042;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000070;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 291394 292863 . - . ID=Phyra81042;Parent=Phyra81042;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 291394 292863 . - 0 ID=Phyra81042;Parent=Phyra81042;rank=1 scaffold_55 . exon 291394 292863 . - . ID=Phyra81042.1;Parent=Phyra81042;constitutive=1;rank=1 scaffold_55 . biological_region 299312 299312 0.999 - . logic_name=eponine scaffold_55 . biological_region 307026 307031 0.999 - . logic_name=eponine scaffold_55 . biological_region 307137 307143 0.999 + . logic_name=eponine scaffold_55 . biological_region 307233 307234 0.999 - . logic_name=eponine scaffold_55 . repeat_region 307276 307323 . ? . description=dust scaffold_55 . biological_region 307875 307878 0.999 - . logic_name=eponine scaffold_55 ensembl protein_coding_gene 299838 300690 . + . ID=Phyra81043;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000071;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 299838 300690 . + . ID=Phyra81043;Parent=Phyra81043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 299838 300015 . + 0 ID=Phyra81043;Parent=Phyra81043;rank=1 scaffold_55 . exon 299838 300015 . + . ID=Phyra81043.1;Parent=Phyra81043;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 300091 300128 . + 0 ID=Phyra81043;Parent=Phyra81043;rank=2 scaffold_55 . exon 300091 300128 . + . ID=Phyra81043.2;Parent=Phyra81043;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 300200 300622 . + 0 ID=Phyra81043;Parent=Phyra81043;rank=3 scaffold_55 . exon 300200 300622 . + . ID=Phyra81043.3;Parent=Phyra81043;constitutive=1;rank=3 scaffold_55 . CDS 300643 300690 . + 0 ID=Phyra81043;Parent=Phyra81043;rank=4 scaffold_55 . exon 300643 300690 . + . ID=Phyra81043.4;Parent=Phyra81043;constitutive=1;rank=4 scaffold_55 ensembl protein_coding_gene 301140 302530 . - . ID=Phyra81044;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000072;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 301140 302530 . - . ID=Phyra81044;Parent=Phyra81044;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 301140 302078 . - 0 ID=Phyra81044;Parent=Phyra81044;rank=3 scaffold_55 . exon 301140 302078 . - . ID=Phyra81044.3;Parent=Phyra81044;constitutive=1;rank=3 scaffold_55 . CDS 302156 302193 . - 0 ID=Phyra81044;Parent=Phyra81044;rank=2 scaffold_55 . exon 302156 302193 . - . ID=Phyra81044.2;Parent=Phyra81044;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 302272 302530 . - 0 ID=Phyra81044;Parent=Phyra81044;rank=1 scaffold_55 . exon 302272 302530 . - . ID=Phyra81044.1;Parent=Phyra81044;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 ensembl protein_coding_gene 305656 306906 . - . ID=Phyra81045;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000073;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 305656 306906 . - . ID=Phyra81045;Parent=Phyra81045;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 305656 306906 . - 0 ID=Phyra81045;Parent=Phyra81045;rank=1 scaffold_55 . exon 305656 306906 . - . ID=Phyra81045.1;Parent=Phyra81045;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 308507 310078 . - . ID=Phyra81046;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000074;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 308507 310078 . - . ID=Phyra81046;Parent=Phyra81046;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 308507 310078 . - 0 ID=Phyra81046;Parent=Phyra81046;rank=1 scaffold_55 . exon 308507 310078 . - . ID=Phyra81046.1;Parent=Phyra81046;constitutive=1;rank=1 scaffold_55 . repeat_region 317088 317114 . ? . description=trf scaffold_55 ensembl protein_coding_gene 310884 315118 . - . ID=Phyra81047;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000075;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 310884 315118 . - . ID=Phyra81047;Parent=Phyra81047;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 310884 312189 . - 0 ID=Phyra81047;Parent=Phyra81047;rank=3 scaffold_55 . exon 310884 312189 . - . ID=Phyra81047.3;Parent=Phyra81047;constitutive=1;ensembl_phase=2;rank=3 scaffold_55 . CDS 312221 312303 . - 0 ID=Phyra81047;Parent=Phyra81047;rank=2 scaffold_55 . exon 312221 312303 . - . ID=Phyra81047.2;Parent=Phyra81047;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_55 . CDS 313163 315118 . - 0 ID=Phyra81047;Parent=Phyra81047;rank=1 scaffold_55 . exon 313163 315118 . - . ID=Phyra81047.1;Parent=Phyra81047;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 315969 316475 . - . ID=Phyra81048;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000076;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 315969 316475 . - . ID=Phyra81048;Parent=Phyra81048;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 315969 316475 . - 0 ID=Phyra81048;Parent=Phyra81048;rank=1 scaffold_55 . exon 315969 316475 . - . ID=Phyra81048.1;Parent=Phyra81048;constitutive=1;rank=1 scaffold_55 . repeat_region 320740 320747 . ? . description=dust scaffold_55 . biological_region 322208 322214 0.999 + . logic_name=eponine scaffold_55 . repeat_region 322229 322259 . ? . description=dust scaffold_55 . biological_region 322254 322257 0.999 - . logic_name=eponine scaffold_55 . biological_region 322266 322271 0.999 - . logic_name=eponine scaffold_55 . biological_region 323533 323535 0.999 + . logic_name=eponine scaffold_55 . biological_region 325215 325217 0.999 + . logic_name=eponine scaffold_55 . biological_region 325223 325223 0.999 + . logic_name=eponine scaffold_55 ensembl protein_coding_gene 319342 319848 . + . ID=Phyra81049;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000077;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 319342 319848 . + . ID=Phyra81049;Parent=Phyra81049;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 319342 319848 . + 0 ID=Phyra81049;Parent=Phyra81049;rank=1 scaffold_55 . exon 319342 319848 . + . ID=Phyra81049.1;Parent=Phyra81049;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 321528 324601 . - . ID=Phyra81051;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000079;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 321528 324601 . - . ID=Phyra81051;Parent=Phyra81051;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 321528 324241 . - 0 ID=Phyra81051;Parent=Phyra81051;rank=2 scaffold_55 . exon 321528 324241 . - . ID=Phyra81051.2;Parent=Phyra81051;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 324316 324601 . - 0 ID=Phyra81051;Parent=Phyra81051;rank=1 scaffold_55 . exon 324316 324601 . - . ID=Phyra81051.1;Parent=Phyra81051;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 ensembl protein_coding_gene 325110 326081 . + . ID=Phyra81052;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000080;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 325110 326081 . + . ID=Phyra81052;Parent=Phyra81052;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 325110 326081 . + 0 ID=Phyra81052;Parent=Phyra81052;rank=1 scaffold_55 . exon 325110 326081 . + . ID=Phyra81052.1;Parent=Phyra81052;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 320470 321335 . + . ID=Phyra95881;biotype=protein_coding;external_name=C_scaffold_55000013;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 320470 321335 . + . ID=Phyra95881;Parent=Phyra95881;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 320470 320701 . + 0 ID=Phyra95881;Parent=Phyra95881;rank=1 scaffold_55 . exon 320470 320701 . + . ID=Phyra95881.1;Parent=Phyra95881;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 320769 320914 . + 0 ID=Phyra95881;Parent=Phyra95881;rank=2 scaffold_55 . exon 320769 320914 . + . ID=Phyra95881.2;Parent=Phyra95881;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 320982 321335 . + 0 ID=Phyra95881;Parent=Phyra95881;rank=3 scaffold_55 . exon 320982 321335 . + . ID=Phyra95881.3;Parent=Phyra95881;constitutive=1;rank=3 scaffold_55 . repeat_region 337911 337961 . ? . description=trf scaffold_55 . repeat_region 338485 338535 . ? . description=trf scaffold_55 ensembl tRNA_gene 338384 338456 . - . ID=EPrPRAG00000000029;biotype=tRNA;description=tRNA-Val for anticodon UAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_55 ensembl transcript 338384 338456 . - . ID=EPrPRAT00000000029;Parent=EPrPRAG00000000029;biotype=tRNA;logic_name=ncrna_eg scaffold_55 ensembl tRNA_gene 337810 337882 . - . ID=EPrPRAG00000000176;biotype=tRNA;description=tRNA-Val for anticodon UAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_55 ensembl transcript 337810 337882 . - . ID=EPrPRAT00000000176;Parent=EPrPRAG00000000176;biotype=tRNA;logic_name=ncrna_eg scaffold_55 . exon 338384 338456 . - . ID=EPrPRAE00000000029;Parent=EPrPRAT00000000029;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . exon 337810 337882 . - . ID=EPrPRAE00000000176;Parent=EPrPRAT00000000176;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 ensembl protein_coding_gene 331316 331918 . - . ID=Phyra71860;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_55000011;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 331316 331918 . - . ID=Phyra71860;Parent=Phyra71860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 331316 331918 . - 0 ID=Phyra71860;Parent=Phyra71860;rank=1 scaffold_55 . exon 331316 331918 . - . ID=Phyra71860.1;Parent=Phyra71860;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 328736 330748 . - . ID=Phyra81053;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000081;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 328736 330748 . - . ID=Phyra81053;Parent=Phyra81053;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 328736 330748 . - 0 ID=Phyra81053;Parent=Phyra81053;rank=1 scaffold_55 . exon 328736 330748 . - . ID=Phyra81053.1;Parent=Phyra81053;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 332776 333753 . - . ID=Phyra81055;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_55000083;logic_name=jgi_phyra1 scaffold_55 ensembl transcript 332776 333753 . - . ID=Phyra81055;Parent=Phyra81055;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_55 . CDS 332776 333194 . - 0 ID=Phyra81055;Parent=Phyra81055;rank=2 scaffold_55 . exon 332776 333194 . - . ID=Phyra81055.2;Parent=Phyra81055;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 333222 333753 . - 0 ID=Phyra81055;Parent=Phyra81055;rank=1 scaffold_55 . exon 333222 333753 . - . ID=Phyra81055.1;Parent=Phyra81055;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_54 1 340070 scaffold_54 . biological_region 9044 9046 0.999 - . logic_name=eponine scaffold_54 ensembl protein_coding_gene 3939 6310 . - . ID=Phyra50547;biotype=protein_coding;external_name=gwEuk.54.18.1;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 3939 6310 . - . ID=Phyra50547;Parent=Phyra50547;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 3939 4669 . - 0 ID=Phyra50547;Parent=Phyra50547;rank=5 scaffold_54 . exon 3939 4669 . - . ID=Phyra50547.5;Parent=Phyra50547;constitutive=1;ensembl_phase=1;rank=5 scaffold_54 . CDS 4712 5009 . - 0 ID=Phyra50547;Parent=Phyra50547;rank=4 scaffold_54 . exon 4712 5009 . - . ID=Phyra50547.4;Parent=Phyra50547;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_54 . CDS 5083 5118 . - 0 ID=Phyra50547;Parent=Phyra50547;rank=3 scaffold_54 . exon 5083 5118 . - . ID=Phyra50547.3;Parent=Phyra50547;constitutive=1;rank=3 scaffold_54 . CDS 5195 5437 . - 0 ID=Phyra50547;Parent=Phyra50547;rank=2 scaffold_54 . exon 5195 5437 . - . ID=Phyra50547.2;Parent=Phyra50547;constitutive=1;rank=2 scaffold_54 . CDS 5600 6310 . - 0 ID=Phyra50547;Parent=Phyra50547;rank=1 scaffold_54 . exon 5600 6310 . - . ID=Phyra50547.1;Parent=Phyra50547;constitutive=1;rank=1 scaffold_54 . repeat_region 12268 12279 . ? . description=dust scaffold_54 . repeat_region 12422 12437 . ? . description=dust scaffold_54 . repeat_region 14316 14341 . ? . description=trf scaffold_54 ensembl protein_coding_gene 10434 12803 . - . ID=Phyra80876;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000002;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 10434 12803 . - . ID=Phyra80876;Parent=Phyra80876;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 10434 10673 . - 0 ID=Phyra80876;Parent=Phyra80876;rank=9 scaffold_54 . exon 10434 10673 . - . ID=Phyra80876.9;Parent=Phyra80876;constitutive=1;rank=9 scaffold_54 . CDS 10753 11143 . - 0 ID=Phyra80876;Parent=Phyra80876;rank=8 scaffold_54 . exon 10753 11143 . - . ID=Phyra80876.8;Parent=Phyra80876;constitutive=1;ensembl_phase=2;rank=8 scaffold_54 . CDS 11203 11288 . - 0 ID=Phyra80876;Parent=Phyra80876;rank=7 scaffold_54 . exon 11203 11288 . - . ID=Phyra80876.7;Parent=Phyra80876;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_54 . CDS 11324 11354 . - 0 ID=Phyra80876;Parent=Phyra80876;rank=6 scaffold_54 . exon 11324 11354 . - . ID=Phyra80876.6;Parent=Phyra80876;constitutive=1;ensembl_phase=2;rank=6 scaffold_54 . CDS 11596 11753 . - 0 ID=Phyra80876;Parent=Phyra80876;rank=5 scaffold_54 . exon 11596 11753 . - . ID=Phyra80876.5;Parent=Phyra80876;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_54 . CDS 11847 11897 . - 0 ID=Phyra80876;Parent=Phyra80876;rank=4 scaffold_54 . exon 11847 11897 . - . ID=Phyra80876.4;Parent=Phyra80876;constitutive=1;rank=4 scaffold_54 . CDS 11961 12069 . - 0 ID=Phyra80876;Parent=Phyra80876;rank=3 scaffold_54 . exon 11961 12069 . - . ID=Phyra80876.3;Parent=Phyra80876;constitutive=1;ensembl_phase=2;rank=3 scaffold_54 . CDS 12462 12538 . - 0 ID=Phyra80876;Parent=Phyra80876;rank=2 scaffold_54 . exon 12462 12538 . - . ID=Phyra80876.2;Parent=Phyra80876;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_54 . CDS 12618 12803 . - 0 ID=Phyra80876;Parent=Phyra80876;rank=1 scaffold_54 . exon 12618 12803 . - . ID=Phyra80876.1;Parent=Phyra80876;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 13674 19082 . + . ID=Phyra80877;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000003;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 13674 19082 . + . ID=Phyra80877;Parent=Phyra80877;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 13674 14692 . + 0 ID=Phyra80877;Parent=Phyra80877;rank=1 scaffold_54 . exon 13674 14692 . + . ID=Phyra80877.1;Parent=Phyra80877;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 14774 19082 . + 0 ID=Phyra80877;Parent=Phyra80877;rank=2 scaffold_54 . exon 14774 19082 . + . ID=Phyra80877.2;Parent=Phyra80877;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . biological_region 27178 27186 0.999 + . logic_name=eponine scaffold_54 . biological_region 27277 27279 0.999 - . logic_name=eponine scaffold_54 . biological_region 28107 28111 0.999 + . logic_name=eponine scaffold_54 ensembl protein_coding_gene 23342 23975 . + . ID=Phyra80878;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000004;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 23342 23975 . + . ID=Phyra80878;Parent=Phyra80878;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 23342 23427 . + 0 ID=Phyra80878;Parent=Phyra80878;rank=1 scaffold_54 . exon 23342 23427 . + . ID=Phyra80878.1;Parent=Phyra80878;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 23504 23810 . + 0 ID=Phyra80878;Parent=Phyra80878;rank=2 scaffold_54 . exon 23504 23810 . + . ID=Phyra80878.2;Parent=Phyra80878;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 23865 23975 . + 0 ID=Phyra80878;Parent=Phyra80878;rank=3 scaffold_54 . exon 23865 23975 . + . ID=Phyra80878.3;Parent=Phyra80878;constitutive=1;rank=3 scaffold_54 ensembl protein_coding_gene 24277 24879 . - . ID=Phyra80879;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000005;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 24277 24879 . - . ID=Phyra80879;Parent=Phyra80879;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 24277 24879 . - 0 ID=Phyra80879;Parent=Phyra80879;rank=1 scaffold_54 . exon 24277 24879 . - . ID=Phyra80879.1;Parent=Phyra80879;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 25172 26098 . - . ID=Phyra80880;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000006;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 25172 26098 . - . ID=Phyra80880;Parent=Phyra80880;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 25172 26098 . - 0 ID=Phyra80880;Parent=Phyra80880;rank=1 scaffold_54 . exon 25172 26098 . - . ID=Phyra80880.1;Parent=Phyra80880;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 27078 30347 . + . ID=Phyra80881;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000007;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 27078 30347 . + . ID=Phyra80881;Parent=Phyra80881;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 27078 30347 . + 0 ID=Phyra80881;Parent=Phyra80881;rank=1 scaffold_54 . exon 27078 30347 . + . ID=Phyra80881.1;Parent=Phyra80881;constitutive=1;rank=1 scaffold_54 . repeat_region 38201 38208 . ? . description=dust scaffold_54 ensembl protein_coding_gene 34125 34550 . - . ID=Phyra80882;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000008;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 34125 34550 . - . ID=Phyra80882;Parent=Phyra80882;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 34125 34550 . - 0 ID=Phyra80882;Parent=Phyra80882;rank=1 scaffold_54 . exon 34125 34550 . - . ID=Phyra80882.1;Parent=Phyra80882;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 34861 36012 . + . ID=Phyra80883;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000009;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 34861 36012 . + . ID=Phyra80883;Parent=Phyra80883;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 34861 35259 . + 0 ID=Phyra80883;Parent=Phyra80883;rank=1 scaffold_54 . exon 34861 35259 . + . ID=Phyra80883.1;Parent=Phyra80883;constitutive=1;rank=1 scaffold_54 . CDS 35332 35441 . + 0 ID=Phyra80883;Parent=Phyra80883;rank=2 scaffold_54 . exon 35332 35441 . + . ID=Phyra80883.2;Parent=Phyra80883;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_54 . CDS 35500 35644 . + 0 ID=Phyra80883;Parent=Phyra80883;rank=3 scaffold_54 . exon 35500 35644 . + . ID=Phyra80883.3;Parent=Phyra80883;constitutive=1;ensembl_phase=2;rank=3 scaffold_54 . CDS 35689 36012 . + 0 ID=Phyra80883;Parent=Phyra80883;rank=4 scaffold_54 . exon 35689 36012 . + . ID=Phyra80883.4;Parent=Phyra80883;constitutive=1;rank=4 scaffold_54 ensembl protein_coding_gene 38393 38773 . - . ID=Phyra80884;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000010;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 38393 38773 . - . ID=Phyra80884;Parent=Phyra80884;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 38393 38773 . - 0 ID=Phyra80884;Parent=Phyra80884;rank=1 scaffold_54 . exon 38393 38773 . - . ID=Phyra80884.1;Parent=Phyra80884;constitutive=1;rank=1 scaffold_54 . biological_region 39870 39871 0.999 + . logic_name=eponine scaffold_54 . biological_region 43753 43756 0.999 - . logic_name=eponine scaffold_54 ensembl protein_coding_gene 45399 45853 . - . ID=Phyra71840;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_54000001;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 45399 45853 . - . ID=Phyra71840;Parent=Phyra71840;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 45399 45716 . - 0 ID=Phyra71840;Parent=Phyra71840;rank=2 scaffold_54 . exon 45399 45716 . - . ID=Phyra71840.2;Parent=Phyra71840;constitutive=1;rank=2 scaffold_54 . CDS 45833 45853 . - 0 ID=Phyra71840;Parent=Phyra71840;rank=1 scaffold_54 . exon 45833 45853 . - . ID=Phyra71840.1;Parent=Phyra71840;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 40945 41643 . + . ID=Phyra80885;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000011;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 40945 41643 . + . ID=Phyra80885;Parent=Phyra80885;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 40945 41643 . + 0 ID=Phyra80885;Parent=Phyra80885;rank=1 scaffold_54 . exon 40945 41643 . + . ID=Phyra80885.1;Parent=Phyra80885;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 46266 46669 . - . ID=Phyra80887;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000013;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 46266 46669 . - . ID=Phyra80887;Parent=Phyra80887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 46266 46343 . - 0 ID=Phyra80887;Parent=Phyra80887;rank=2 scaffold_54 . exon 46266 46343 . - . ID=Phyra80887.2;Parent=Phyra80887;constitutive=1;rank=2 scaffold_54 . CDS 46415 46669 . - 0 ID=Phyra80887;Parent=Phyra80887;rank=1 scaffold_54 . exon 46415 46669 . - . ID=Phyra80887.1;Parent=Phyra80887;constitutive=1;rank=1 scaffold_54 . repeat_region 52253 52302 . ? . description=dust scaffold_54 ensembl protein_coding_gene 49079 49960 . + . ID=Phyra50564;biotype=protein_coding;external_name=gwEuk.54.35.1;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 49079 49960 . + . ID=Phyra50564;Parent=Phyra50564;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 49079 49960 . + 0 ID=Phyra50564;Parent=Phyra50564;rank=1 scaffold_54 . exon 49079 49960 . + . ID=Phyra50564.1;Parent=Phyra50564;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 50292 51746 . - . ID=Phyra80889;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000015;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 50292 51746 . - . ID=Phyra80889;Parent=Phyra80889;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 50292 51746 . - 0 ID=Phyra80889;Parent=Phyra80889;rank=1 scaffold_54 . exon 50292 51746 . - . ID=Phyra80889.1;Parent=Phyra80889;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 52466 52921 . + . ID=Phyra80890;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000016;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 52466 52921 . + . ID=Phyra80890;Parent=Phyra80890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 52466 52921 . + 0 ID=Phyra80890;Parent=Phyra80890;rank=1 scaffold_54 . exon 52466 52921 . + . ID=Phyra80890.1;Parent=Phyra80890;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 54015 55220 . + . ID=Phyra80891;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000017;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 54015 55220 . + . ID=Phyra80891;Parent=Phyra80891;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 54015 54239 . + 0 ID=Phyra80891;Parent=Phyra80891;rank=1 scaffold_54 . exon 54015 54239 . + . ID=Phyra80891.1;Parent=Phyra80891;constitutive=1;rank=1 scaffold_54 . CDS 54363 54517 . + 0 ID=Phyra80891;Parent=Phyra80891;rank=2 scaffold_54 . exon 54363 54517 . + . ID=Phyra80891.2;Parent=Phyra80891;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_54 . CDS 54584 54637 . + 0 ID=Phyra80891;Parent=Phyra80891;rank=3 scaffold_54 . exon 54584 54637 . + . ID=Phyra80891.3;Parent=Phyra80891;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_54 . CDS 54716 55080 . + 0 ID=Phyra80891;Parent=Phyra80891;rank=4 scaffold_54 . exon 54716 55080 . + . ID=Phyra80891.4;Parent=Phyra80891;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_54 . CDS 55153 55220 . + 0 ID=Phyra80891;Parent=Phyra80891;rank=5 scaffold_54 . exon 55153 55220 . + . ID=Phyra80891.5;Parent=Phyra80891;constitutive=1;ensembl_phase=1;rank=5 scaffold_54 ensembl protein_coding_gene 55366 57383 . - . ID=Phyra80892;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000018;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 55366 57383 . - . ID=Phyra80892;Parent=Phyra80892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 55366 56370 . - 0 ID=Phyra80892;Parent=Phyra80892;rank=4 scaffold_54 . exon 55366 56370 . - . ID=Phyra80892.4;Parent=Phyra80892;constitutive=1;rank=4 scaffold_54 . CDS 56430 56627 . - 0 ID=Phyra80892;Parent=Phyra80892;rank=3 scaffold_54 . exon 56430 56627 . - . ID=Phyra80892.3;Parent=Phyra80892;constitutive=1;rank=3 scaffold_54 . CDS 56702 57009 . - 0 ID=Phyra80892;Parent=Phyra80892;rank=2 scaffold_54 . exon 56702 57009 . - . ID=Phyra80892.2;Parent=Phyra80892;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 . CDS 57077 57383 . - 0 ID=Phyra80892;Parent=Phyra80892;rank=1 scaffold_54 . exon 57077 57383 . - . ID=Phyra80892.1;Parent=Phyra80892;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 ensembl protein_coding_gene 57573 59711 . - . ID=Phyra80893;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000019;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 57573 59711 . - . ID=Phyra80893;Parent=Phyra80893;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 57573 59711 . - 0 ID=Phyra80893;Parent=Phyra80893;rank=1 scaffold_54 . exon 57573 59711 . - . ID=Phyra80893.1;Parent=Phyra80893;constitutive=1;rank=1 scaffold_54 . biological_region 58995 58995 0.999 + . logic_name=eponine scaffold_54 . biological_region 59063 59066 0.999 - . logic_name=eponine scaffold_54 . biological_region 61170 61170 0.999 + . logic_name=eponine scaffold_54 ensembl protein_coding_gene 63152 64189 . + . ID=Phyra71842;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_54000003;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 63152 64189 . + . ID=Phyra71842;Parent=Phyra71842;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 63152 64189 . + 0 ID=Phyra71842;Parent=Phyra71842;rank=1 scaffold_54 . exon 63152 64189 . + . ID=Phyra71842.1;Parent=Phyra71842;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 60155 62471 . - . ID=Phyra80894;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000020;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 60155 62471 . - . ID=Phyra80894;Parent=Phyra80894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 60155 61023 . - 0 ID=Phyra80894;Parent=Phyra80894;rank=4 scaffold_54 . exon 60155 61023 . - . ID=Phyra80894.4;Parent=Phyra80894;constitutive=1;ensembl_phase=1;rank=4 scaffold_54 . CDS 61086 61234 . - 0 ID=Phyra80894;Parent=Phyra80894;rank=3 scaffold_54 . exon 61086 61234 . - . ID=Phyra80894.3;Parent=Phyra80894;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_54 . CDS 61388 62252 . - 0 ID=Phyra80894;Parent=Phyra80894;rank=2 scaffold_54 . exon 61388 62252 . - . ID=Phyra80894.2;Parent=Phyra80894;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_54 . CDS 62318 62471 . - 0 ID=Phyra80894;Parent=Phyra80894;rank=1 scaffold_54 . exon 62318 62471 . - . ID=Phyra80894.1;Parent=Phyra80894;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 ensembl protein_coding_gene 64504 65705 . + . ID=Phyra80896;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000022;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 64504 65705 . + . ID=Phyra80896;Parent=Phyra80896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 64504 64669 . + 0 ID=Phyra80896;Parent=Phyra80896;rank=1 scaffold_54 . exon 64504 64669 . + . ID=Phyra80896.1;Parent=Phyra80896;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 . CDS 64738 64956 . + 0 ID=Phyra80896;Parent=Phyra80896;rank=2 scaffold_54 . exon 64738 64956 . + . ID=Phyra80896.2;Parent=Phyra80896;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_54 . CDS 65032 65705 . + 0 ID=Phyra80896;Parent=Phyra80896;rank=3 scaffold_54 . exon 65032 65705 . + . ID=Phyra80896.3;Parent=Phyra80896;constitutive=1;ensembl_phase=1;rank=3 scaffold_54 . repeat_region 68907 68915 . ? . description=dust scaffold_54 . repeat_region 71395 71415 . ? . description=trf scaffold_54 ensembl protein_coding_gene 68402 71064 . + . ID=Phyra80897;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000023;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 68402 71064 . + . ID=Phyra80897;Parent=Phyra80897;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 68402 68864 . + 0 ID=Phyra80897;Parent=Phyra80897;rank=1 scaffold_54 . exon 68402 68864 . + . ID=Phyra80897.1;Parent=Phyra80897;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 . CDS 68918 71064 . + 0 ID=Phyra80897;Parent=Phyra80897;rank=2 scaffold_54 . exon 68918 71064 . + . ID=Phyra80897.2;Parent=Phyra80897;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 ensembl protein_coding_gene 71392 71871 . - . ID=Phyra80898;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000024;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 71392 71871 . - . ID=Phyra80898;Parent=Phyra80898;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 71392 71428 . - 0 ID=Phyra80898;Parent=Phyra80898;rank=3 scaffold_54 . exon 71392 71428 . - . ID=Phyra80898.3;Parent=Phyra80898;constitutive=1;ensembl_phase=2;rank=3 scaffold_54 . CDS 71484 71640 . - 0 ID=Phyra80898;Parent=Phyra80898;rank=2 scaffold_54 . exon 71484 71640 . - . ID=Phyra80898.2;Parent=Phyra80898;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_54 . CDS 71721 71871 . - 0 ID=Phyra80898;Parent=Phyra80898;rank=1 scaffold_54 . exon 71721 71871 . - . ID=Phyra80898.1;Parent=Phyra80898;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 ensembl protein_coding_gene 72554 73609 . - . ID=Phyra80899;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000025;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 72554 73609 . - . ID=Phyra80899;Parent=Phyra80899;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 72554 73609 . - 0 ID=Phyra80899;Parent=Phyra80899;rank=1 scaffold_54 . exon 72554 73609 . - . ID=Phyra80899.1;Parent=Phyra80899;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 75809 77860 . - . ID=Phyra80900;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000026;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 75809 77860 . - . ID=Phyra80900;Parent=Phyra80900;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 75809 76267 . - 0 ID=Phyra80900;Parent=Phyra80900;rank=5 scaffold_54 . exon 75809 76267 . - . ID=Phyra80900.5;Parent=Phyra80900;constitutive=1;rank=5 scaffold_54 . CDS 76372 76475 . - 0 ID=Phyra80900;Parent=Phyra80900;rank=4 scaffold_54 . exon 76372 76475 . - . ID=Phyra80900.4;Parent=Phyra80900;constitutive=1;ensembl_phase=1;rank=4 scaffold_54 . CDS 76727 77166 . - 0 ID=Phyra80900;Parent=Phyra80900;rank=3 scaffold_54 . exon 76727 77166 . - . ID=Phyra80900.3;Parent=Phyra80900;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_54 . CDS 77266 77545 . - 0 ID=Phyra80900;Parent=Phyra80900;rank=2 scaffold_54 . exon 77266 77545 . - . ID=Phyra80900.2;Parent=Phyra80900;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_54 . CDS 77617 77860 . - 0 ID=Phyra80900;Parent=Phyra80900;rank=1 scaffold_54 . exon 77617 77860 . - . ID=Phyra80900.1;Parent=Phyra80900;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 ensembl tRNA_gene 78196 78268 . + . ID=EPrPRAG00000000091;biotype=tRNA;description=tRNA-Arg for anticodon CCU [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_54 ensembl transcript 78196 78268 . + . ID=EPrPRAT00000000091;Parent=EPrPRAG00000000091;biotype=tRNA;logic_name=ncrna_eg scaffold_54 . exon 78196 78268 . + . ID=EPrPRAE00000000091;Parent=EPrPRAT00000000091;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 ensembl protein_coding_gene 84487 86058 . - . ID=Phyra50581;biotype=protein_coding;external_name=gwEuk.54.52.1;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 84487 86058 . - . ID=Phyra50581;Parent=Phyra50581;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 84487 86058 . - 0 ID=Phyra50581;Parent=Phyra50581;rank=1 scaffold_54 . exon 84487 86058 . - . ID=Phyra50581.1;Parent=Phyra50581;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 81447 83025 . - . ID=Phyra80901;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000027;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 81447 83025 . - . ID=Phyra80901;Parent=Phyra80901;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 81447 81543 . - 0 ID=Phyra80901;Parent=Phyra80901;rank=7 scaffold_54 . exon 81447 81543 . - . ID=Phyra80901.7;Parent=Phyra80901;constitutive=1;ensembl_phase=2;rank=7 scaffold_54 . CDS 81642 81745 . - 0 ID=Phyra80901;Parent=Phyra80901;rank=6 scaffold_54 . exon 81642 81745 . - . ID=Phyra80901.6;Parent=Phyra80901;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_54 . CDS 81852 82124 . - 0 ID=Phyra80901;Parent=Phyra80901;rank=5 scaffold_54 . exon 81852 82124 . - . ID=Phyra80901.5;Parent=Phyra80901;constitutive=1;rank=5 scaffold_54 . CDS 82229 82302 . - 0 ID=Phyra80901;Parent=Phyra80901;rank=4 scaffold_54 . exon 82229 82302 . - . ID=Phyra80901.4;Parent=Phyra80901;constitutive=1;ensembl_phase=1;rank=4 scaffold_54 . CDS 82390 82463 . - 0 ID=Phyra80901;Parent=Phyra80901;rank=3 scaffold_54 . exon 82390 82463 . - . ID=Phyra80901.3;Parent=Phyra80901;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_54 . CDS 82560 82810 . - 0 ID=Phyra80901;Parent=Phyra80901;rank=2 scaffold_54 . exon 82560 82810 . - . ID=Phyra80901.2;Parent=Phyra80901;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_54 . CDS 82906 83025 . - 0 ID=Phyra80901;Parent=Phyra80901;rank=1 scaffold_54 . exon 82906 83025 . - . ID=Phyra80901.1;Parent=Phyra80901;constitutive=1;rank=1 scaffold_54 . repeat_region 87969 87988 . ? . description=trf scaffold_54 . biological_region 88327 88330 0.999 - . logic_name=eponine scaffold_54 . biological_region 88477 88479 0.999 - . logic_name=eponine scaffold_54 . biological_region 95224 95225 0.999 + . logic_name=eponine scaffold_54 ensembl protein_coding_gene 88501 91069 . + . ID=Phyra50582;biotype=protein_coding;external_name=gwEuk.54.53.1;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 88501 91069 . + . ID=Phyra50582;Parent=Phyra50582;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 88501 90377 . + 0 ID=Phyra50582;Parent=Phyra50582;rank=1 scaffold_54 . exon 88501 90377 . + . ID=Phyra50582.1;Parent=Phyra50582;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 90432 90767 . + 0 ID=Phyra50582;Parent=Phyra50582;rank=2 scaffold_54 . exon 90432 90767 . + . ID=Phyra50582.2;Parent=Phyra50582;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_54 . CDS 90841 91069 . + 0 ID=Phyra50582;Parent=Phyra50582;rank=3 scaffold_54 . exon 90841 91069 . + . ID=Phyra50582.3;Parent=Phyra50582;constitutive=1;ensembl_phase=2;rank=3 scaffold_54 ensembl protein_coding_gene 93797 94582 . + . ID=Phyra80904;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000030;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 93797 94582 . + . ID=Phyra80904;Parent=Phyra80904;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 93797 94582 . + 0 ID=Phyra80904;Parent=Phyra80904;rank=1 scaffold_54 . exon 93797 94582 . + . ID=Phyra80904.1;Parent=Phyra80904;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 95929 96682 . + . ID=Phyra80905;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000031;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 95929 96682 . + . ID=Phyra80905;Parent=Phyra80905;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 95929 96131 . + 0 ID=Phyra80905;Parent=Phyra80905;rank=1 scaffold_54 . exon 95929 96131 . + . ID=Phyra80905.1;Parent=Phyra80905;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 96208 96682 . + 0 ID=Phyra80905;Parent=Phyra80905;rank=2 scaffold_54 . exon 96208 96682 . + . ID=Phyra80905.2;Parent=Phyra80905;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . repeat_region 101269 101278 . ? . description=dust scaffold_54 . repeat_region 102097 102109 . ? . description=dust scaffold_54 . repeat_region 104254 104264 . ? . description=dust scaffold_54 . repeat_region 105002 105011 . ? . description=dust scaffold_54 . repeat_region 105699 105727 . ? . description=dust scaffold_54 . repeat_region 105751 105766 . ? . description=dust scaffold_54 . repeat_region 105796 105850 . ? . description=dust scaffold_54 . repeat_region 105901 105919 . ? . description=dust scaffold_54 . repeat_region 105945 105955 . ? . description=dust scaffold_54 . repeat_region 105964 106007 . ? . description=dust scaffold_54 . repeat_region 106023 106037 . ? . description=dust scaffold_54 . repeat_region 106058 106107 . ? . description=dust scaffold_54 ensembl protein_coding_gene 97980 98978 . + . ID=Phyra80906;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000032;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 97980 98978 . + . ID=Phyra80906;Parent=Phyra80906;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 97980 98978 . + 0 ID=Phyra80906;Parent=Phyra80906;rank=1 scaffold_54 . exon 97980 98978 . + . ID=Phyra80906.1;Parent=Phyra80906;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 100233 100967 . + . ID=Phyra80907;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000033;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 100233 100967 . + . ID=Phyra80907;Parent=Phyra80907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 100233 100438 . + 0 ID=Phyra80907;Parent=Phyra80907;rank=1 scaffold_54 . exon 100233 100438 . + . ID=Phyra80907.1;Parent=Phyra80907;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 100496 100967 . + 0 ID=Phyra80907;Parent=Phyra80907;rank=2 scaffold_54 . exon 100496 100967 . + . ID=Phyra80907.2;Parent=Phyra80907;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . biological_region 112533 112537 0.999 + . logic_name=eponine scaffold_54 ensembl protein_coding_gene 112387 113374 . + . ID=Phyra80908;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000034;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 112387 113374 . + . ID=Phyra80908;Parent=Phyra80908;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 112387 112909 . + 0 ID=Phyra80908;Parent=Phyra80908;rank=1 scaffold_54 . exon 112387 112909 . + . ID=Phyra80908.1;Parent=Phyra80908;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 . CDS 112980 113374 . + 0 ID=Phyra80908;Parent=Phyra80908;rank=2 scaffold_54 . exon 112980 113374 . + . ID=Phyra80908.2;Parent=Phyra80908;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 . repeat_region 120749 120757 . ? . description=dust scaffold_54 . repeat_region 123216 123223 . ? . description=dust scaffold_54 . repeat_region 123682 123699 . ? . description=dust scaffold_54 . repeat_region 123902 124007 . ? . description=trf scaffold_54 . repeat_region 126138 126187 . ? . description=dust scaffold_54 . repeat_region 126189 127360 . - . description=Polinton-1_PI scaffold_54 ensembl protein_coding_gene 120871 121286 . - . ID=Phyra80909;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000035;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 120871 121286 . - . ID=Phyra80909;Parent=Phyra80909;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 120871 121096 . - 0 ID=Phyra80909;Parent=Phyra80909;rank=2 scaffold_54 . exon 120871 121096 . - . ID=Phyra80909.2;Parent=Phyra80909;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 121162 121286 . - 0 ID=Phyra80909;Parent=Phyra80909;rank=1 scaffold_54 . exon 121162 121286 . - . ID=Phyra80909.1;Parent=Phyra80909;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 ensembl protein_coding_gene 123867 126022 . + . ID=Phyra80910;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000036;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 123867 126022 . + . ID=Phyra80910;Parent=Phyra80910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 123867 124401 . + 0 ID=Phyra80910;Parent=Phyra80910;rank=1 scaffold_54 . exon 123867 124401 . + . ID=Phyra80910.1;Parent=Phyra80910;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 . CDS 124502 124638 . + 0 ID=Phyra80910;Parent=Phyra80910;rank=2 scaffold_54 . exon 124502 124638 . + . ID=Phyra80910.2;Parent=Phyra80910;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 . CDS 124671 124849 . + 0 ID=Phyra80910;Parent=Phyra80910;rank=3 scaffold_54 . exon 124671 124849 . + . ID=Phyra80910.3;Parent=Phyra80910;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_54 . CDS 125067 125195 . + 0 ID=Phyra80910;Parent=Phyra80910;rank=4 scaffold_54 . exon 125067 125195 . + . ID=Phyra80910.4;Parent=Phyra80910;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_54 . CDS 125374 125674 . + 0 ID=Phyra80910;Parent=Phyra80910;rank=5 scaffold_54 . exon 125374 125674 . + . ID=Phyra80910.5;Parent=Phyra80910;constitutive=1;ensembl_phase=2;rank=5 scaffold_54 . CDS 125756 126022 . + 0 ID=Phyra80910;Parent=Phyra80910;rank=6 scaffold_54 . exon 125756 126022 . + . ID=Phyra80910.6;Parent=Phyra80910;constitutive=1;rank=6 scaffold_54 . biological_region 132583 132586 0.999 - . logic_name=eponine scaffold_54 . biological_region 133323 133324 0.999 - . logic_name=eponine scaffold_54 . biological_region 133674 133678 0.999 - . logic_name=eponine scaffold_54 . biological_region 134234 134237 0.999 - . logic_name=eponine scaffold_54 . biological_region 135710 135713 0.999 + . logic_name=eponine scaffold_54 ensembl protein_coding_gene 132231 132999 . + . ID=Phyra80911;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000037;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 132231 132999 . + . ID=Phyra80911;Parent=Phyra80911;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 132231 132433 . + 0 ID=Phyra80911;Parent=Phyra80911;rank=1 scaffold_54 . exon 132231 132433 . + . ID=Phyra80911.1;Parent=Phyra80911;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 132510 132999 . + 0 ID=Phyra80911;Parent=Phyra80911;rank=2 scaffold_54 . exon 132510 132999 . + . ID=Phyra80911.2;Parent=Phyra80911;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 ensembl protein_coding_gene 133628 134287 . - . ID=Phyra80912;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000038;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 133628 134287 . - . ID=Phyra80912;Parent=Phyra80912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 133628 134287 . - 0 ID=Phyra80912;Parent=Phyra80912;rank=1 scaffold_54 . exon 133628 134287 . - . ID=Phyra80912.1;Parent=Phyra80912;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 135698 136677 . + . ID=Phyra80913;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000039;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 135698 136677 . + . ID=Phyra80913;Parent=Phyra80913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 135698 136278 . + 0 ID=Phyra80913;Parent=Phyra80913;rank=1 scaffold_54 . exon 135698 136278 . + . ID=Phyra80913.1;Parent=Phyra80913;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 136344 136486 . + 0 ID=Phyra80913;Parent=Phyra80913;rank=2 scaffold_54 . CDS 136565 136677 . + 0 ID=Phyra80913;Parent=Phyra80913;rank=3 scaffold_54 . repeat_region 142500 142628 . - . description=GypsyPi-1c_I-int scaffold_54 ensembl protein_coding_gene 142941 143774 . - . ID=Phyra71843;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_54000004;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 142941 143774 . - . ID=Phyra71843;Parent=Phyra71843;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 142941 143774 . - 0 ID=Phyra71843;Parent=Phyra71843;rank=1 scaffold_54 . exon 142941 143774 . - . ID=Phyra71843.1;Parent=Phyra71843;constitutive=1;rank=1 scaffold_54 . exon 136344 136486 . + . ID=Phyra80913.2;Parent=Phyra80913;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_54 . exon 136565 136677 . + . ID=Phyra80913.3;Parent=Phyra80913;constitutive=1;ensembl_phase=1;rank=3 scaffold_54 ensembl protein_coding_gene 138186 138627 . + . ID=Phyra80914;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000040;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 138186 138627 . + . ID=Phyra80914;Parent=Phyra80914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 138186 138278 . + 0 ID=Phyra80914;Parent=Phyra80914;rank=1 scaffold_54 . exon 138186 138278 . + . ID=Phyra80914.1;Parent=Phyra80914;constitutive=1;rank=1 scaffold_54 . CDS 138355 138627 . + 0 ID=Phyra80914;Parent=Phyra80914;rank=2 scaffold_54 . exon 138355 138627 . + . ID=Phyra80914.2;Parent=Phyra80914;constitutive=1;rank=2 scaffold_54 ensembl protein_coding_gene 138707 140923 . - . ID=Phyra80915;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000041;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 138707 140923 . - . ID=Phyra80915;Parent=Phyra80915;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 138707 140923 . - 0 ID=Phyra80915;Parent=Phyra80915;rank=1 scaffold_54 . exon 138707 140923 . - . ID=Phyra80915.1;Parent=Phyra80915;constitutive=1;rank=1 scaffold_54 . biological_region 148012 148019 0.999 - . logic_name=eponine scaffold_54 . biological_region 148070 148073 0.999 + . logic_name=eponine scaffold_54 . biological_region 148124 148129 0.999 - . logic_name=eponine scaffold_54 . biological_region 150214 150217 0.999 + . logic_name=eponine scaffold_54 . biological_region 150285 150286 0.999 - . logic_name=eponine scaffold_54 . biological_region 150921 150926 0.999 - . logic_name=eponine scaffold_54 . repeat_region 152690 152739 . ? . description=dust scaffold_54 . biological_region 152984 152987 0.999 + . logic_name=eponine scaffold_54 . biological_region 153055 153056 0.999 - . logic_name=eponine scaffold_54 . biological_region 153688 153693 0.999 - . logic_name=eponine scaffold_54 ensembl protein_coding_gene 147335 148187 . + . ID=Phyra71844;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_54000005;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 147335 148187 . + . ID=Phyra71844;Parent=Phyra71844;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 147335 147653 . + 0 ID=Phyra71844;Parent=Phyra71844;rank=1 scaffold_54 . exon 147335 147653 . + . ID=Phyra71844.1;Parent=Phyra71844;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 . CDS 147727 148187 . + 0 ID=Phyra71844;Parent=Phyra71844;rank=2 scaffold_54 . exon 147727 148187 . + . ID=Phyra71844.2;Parent=Phyra71844;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 ensembl protein_coding_gene 148579 150365 . - . ID=Phyra80918;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000044;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 148579 150365 . - . ID=Phyra80918;Parent=Phyra80918;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 148579 148733 . - 0 ID=Phyra80918;Parent=Phyra80918;rank=3 scaffold_54 . exon 148579 148733 . - . ID=Phyra80918.3;Parent=Phyra80918;constitutive=1;ensembl_phase=1;rank=3 scaffold_54 . CDS 148822 149903 . - 0 ID=Phyra80918;Parent=Phyra80918;rank=2 scaffold_54 . exon 148822 149903 . - . ID=Phyra80918.2;Parent=Phyra80918;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 150007 150365 . - 0 ID=Phyra80918;Parent=Phyra80918;rank=1 scaffold_54 . exon 150007 150365 . - . ID=Phyra80918.1;Parent=Phyra80918;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 ensembl protein_coding_gene 150835 152658 . + . ID=Phyra80919;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000045;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 150835 152658 . + . ID=Phyra80919;Parent=Phyra80919;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 150835 152658 . + 0 ID=Phyra80919;Parent=Phyra80919;rank=1 scaffold_54 . exon 150835 152658 . + . ID=Phyra80919.1;Parent=Phyra80919;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 152773 153135 . - . ID=Phyra80920;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000046;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 152773 153135 . - . ID=Phyra80920;Parent=Phyra80920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 152773 153135 . - 0 ID=Phyra80920;Parent=Phyra80920;rank=1 scaffold_54 . exon 152773 153135 . - . ID=Phyra80920.1;Parent=Phyra80920;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 153602 155425 . + . ID=Phyra80921;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000047;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 153602 155425 . + . ID=Phyra80921;Parent=Phyra80921;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 153602 155425 . + 0 ID=Phyra80921;Parent=Phyra80921;rank=1 scaffold_54 . exon 153602 155425 . + . ID=Phyra80921.1;Parent=Phyra80921;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 155806 156456 . - . ID=Phyra80922;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000048;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 155806 156456 . - . ID=Phyra80922;Parent=Phyra80922;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 155806 156456 . - 0 ID=Phyra80922;Parent=Phyra80922;rank=1 scaffold_54 . exon 155806 156456 . - . ID=Phyra80922.1;Parent=Phyra80922;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 157712 158650 . - . ID=Phyra80923;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000049;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 157712 158650 . - . ID=Phyra80923;Parent=Phyra80923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 157712 158650 . - 0 ID=Phyra80923;Parent=Phyra80923;rank=1 scaffold_54 . exon 157712 158650 . - . ID=Phyra80923.1;Parent=Phyra80923;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 159855 160685 . - . ID=Phyra80924;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000050;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 159855 160685 . - . ID=Phyra80924;Parent=Phyra80924;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 159855 160685 . - 0 ID=Phyra80924;Parent=Phyra80924;rank=1 scaffold_54 . exon 159855 160685 . - . ID=Phyra80924.1;Parent=Phyra80924;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 160778 161467 . - . ID=Phyra80925;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000051;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 160778 161467 . - . ID=Phyra80925;Parent=Phyra80925;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 160778 161467 . - 0 ID=Phyra80925;Parent=Phyra80925;rank=1 scaffold_54 . exon 160778 161467 . - . ID=Phyra80925.1;Parent=Phyra80925;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 162405 165262 . + . ID=Phyra95851;biotype=protein_coding;external_name=C_scaffold_54000006;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 162405 165262 . + . ID=Phyra95851;Parent=Phyra95851;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 162405 163222 . + 0 ID=Phyra95851;Parent=Phyra95851;rank=1 scaffold_54 . exon 162405 163222 . + . ID=Phyra95851.1;Parent=Phyra95851;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 163553 164119 . + 0 ID=Phyra95851;Parent=Phyra95851;rank=2 scaffold_54 . exon 163553 164119 . + . ID=Phyra95851.2;Parent=Phyra95851;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_54 . CDS 164332 165262 . + 0 ID=Phyra95851;Parent=Phyra95851;rank=3 scaffold_54 . exon 164332 165262 . + . ID=Phyra95851.3;Parent=Phyra95851;constitutive=1;ensembl_phase=2;rank=3 scaffold_54 . biological_region 167846 167847 0.999 - . logic_name=eponine scaffold_54 ensembl protein_coding_gene 166196 167080 . + . ID=Phyra71845;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_54000006;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 166196 167080 . + . ID=Phyra71845;Parent=Phyra71845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 166196 167080 . + 0 ID=Phyra71845;Parent=Phyra71845;rank=1 scaffold_54 . exon 166196 167080 . + . ID=Phyra71845.1;Parent=Phyra71845;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 167246 171637 . - . ID=Phyra80928;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000054;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 167246 171637 . - . ID=Phyra80928;Parent=Phyra80928;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 167246 171637 . - 0 ID=Phyra80928;Parent=Phyra80928;rank=1 scaffold_54 . exon 167246 171637 . - . ID=Phyra80928.1;Parent=Phyra80928;constitutive=1;rank=1 scaffold_54 . repeat_region 183795 183825 . ? . description=trf scaffold_54 . repeat_region 183795 183825 . ? . description=dust scaffold_54 ensembl protein_coding_gene 175109 179371 . + . ID=Phyra80929;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000055;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 175109 179371 . + . ID=Phyra80929;Parent=Phyra80929;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 175109 179371 . + 0 ID=Phyra80929;Parent=Phyra80929;rank=1 scaffold_54 . exon 175109 179371 . + . ID=Phyra80929.1;Parent=Phyra80929;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 180032 180923 . + . ID=Phyra80930;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000056;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 180032 180923 . + . ID=Phyra80930;Parent=Phyra80930;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 180032 180335 . + 0 ID=Phyra80930;Parent=Phyra80930;rank=1 scaffold_54 . exon 180032 180335 . + . ID=Phyra80930.1;Parent=Phyra80930;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 . CDS 180409 180923 . + 0 ID=Phyra80930;Parent=Phyra80930;rank=2 scaffold_54 . exon 180409 180923 . + . ID=Phyra80930.2;Parent=Phyra80930;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 ensembl protein_coding_gene 181282 183969 . - . ID=Phyra80931;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000057;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 181282 183969 . - . ID=Phyra80931;Parent=Phyra80931;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 181282 183969 . - 0 ID=Phyra80931;Parent=Phyra80931;rank=1 scaffold_54 . exon 181282 183969 . - . ID=Phyra80931.1;Parent=Phyra80931;constitutive=1;rank=1 scaffold_54 . biological_region 193564 193565 0.999 - . logic_name=eponine scaffold_54 ensembl protein_coding_gene 184626 185459 . - . ID=Phyra71846;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_54000007;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 184626 185459 . - . ID=Phyra71846;Parent=Phyra71846;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 184626 185459 . - 0 ID=Phyra71846;Parent=Phyra71846;rank=1 scaffold_54 . exon 184626 185459 . - . ID=Phyra71846.1;Parent=Phyra71846;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 185616 188755 . - . ID=Phyra80933;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000059;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 185616 188755 . - . ID=Phyra80933;Parent=Phyra80933;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 185616 188496 . - 0 ID=Phyra80933;Parent=Phyra80933;rank=2 scaffold_54 . exon 185616 188496 . - . ID=Phyra80933.2;Parent=Phyra80933;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 188574 188755 . - 0 ID=Phyra80933;Parent=Phyra80933;rank=1 scaffold_54 . exon 188574 188755 . - . ID=Phyra80933.1;Parent=Phyra80933;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 ensembl protein_coding_gene 190484 191793 . - . ID=Phyra80934;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000060;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 190484 191793 . - . ID=Phyra80934;Parent=Phyra80934;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 190484 190593 . - 0 ID=Phyra80934;Parent=Phyra80934;rank=3 scaffold_54 . exon 190484 190593 . - . ID=Phyra80934.3;Parent=Phyra80934;constitutive=1;ensembl_phase=1;rank=3 scaffold_54 . CDS 190665 190728 . - 0 ID=Phyra80934;Parent=Phyra80934;rank=2 scaffold_54 . exon 190665 190728 . - . ID=Phyra80934.2;Parent=Phyra80934;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_54 . CDS 190816 191793 . - 0 ID=Phyra80934;Parent=Phyra80934;rank=1 scaffold_54 . exon 190816 191793 . - . ID=Phyra80934.1;Parent=Phyra80934;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 193409 194146 . + . ID=Phyra80935;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000061;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 193409 194146 . + . ID=Phyra80935;Parent=Phyra80935;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 193409 194146 . + 0 ID=Phyra80935;Parent=Phyra80935;rank=1 scaffold_54 . exon 193409 194146 . + . ID=Phyra80935.1;Parent=Phyra80935;constitutive=1;rank=1 scaffold_54 . repeat_region 194412 194460 . ? . description=trf scaffold_54 . repeat_region 194432 194458 . ? . description=trf scaffold_54 . repeat_region 200252 200259 . ? . description=dust scaffold_54 . repeat_region 200731 200766 . ? . description=trf scaffold_54 . repeat_region 200735 200766 . ? . description=dust scaffold_54 ensembl protein_coding_gene 194886 195674 . + . ID=Phyra80936;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000062;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 194886 195674 . + . ID=Phyra80936;Parent=Phyra80936;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 194886 194895 . + 0 ID=Phyra80936;Parent=Phyra80936;rank=1 scaffold_54 . exon 194886 194895 . + . ID=Phyra80936.1;Parent=Phyra80936;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 . CDS 194965 195674 . + 0 ID=Phyra80936;Parent=Phyra80936;rank=2 scaffold_54 . exon 194965 195674 . + . ID=Phyra80936.2;Parent=Phyra80936;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 ensembl protein_coding_gene 198374 198676 . + . ID=Phyra80937;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000063;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 198374 198676 . + . ID=Phyra80937;Parent=Phyra80937;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 198374 198676 . + 0 ID=Phyra80937;Parent=Phyra80937;rank=1 scaffold_54 . exon 198374 198676 . + . ID=Phyra80937.1;Parent=Phyra80937;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 199555 200247 . + . ID=Phyra80938;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000064;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 199555 200247 . + . ID=Phyra80938;Parent=Phyra80938;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 199555 200247 . + 0 ID=Phyra80938;Parent=Phyra80938;rank=1 scaffold_54 . exon 199555 200247 . + . ID=Phyra80938.1;Parent=Phyra80938;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 202891 203532 . - . ID=Phyra80939;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000065;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 202891 203532 . - . ID=Phyra80939;Parent=Phyra80939;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 202891 203532 . - 0 ID=Phyra80939;Parent=Phyra80939;rank=1 scaffold_54 . exon 202891 203532 . - . ID=Phyra80939.1;Parent=Phyra80939;constitutive=1;rank=1 scaffold_54 . biological_region 212440 212443 0.999 - . logic_name=eponine scaffold_54 ensembl protein_coding_gene 205237 205878 . + . ID=Phyra80940;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000066;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 205237 205878 . + . ID=Phyra80940;Parent=Phyra80940;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 205237 205878 . + 0 ID=Phyra80940;Parent=Phyra80940;rank=1 scaffold_54 . exon 205237 205878 . + . ID=Phyra80940.1;Parent=Phyra80940;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 206089 206790 . + . ID=Phyra80941;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000067;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 206089 206790 . + . ID=Phyra80941;Parent=Phyra80941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 206089 206790 . + 0 ID=Phyra80941;Parent=Phyra80941;rank=1 scaffold_54 . exon 206089 206790 . + . ID=Phyra80941.1;Parent=Phyra80941;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 206906 209262 . + . ID=Phyra80942;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000068;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 206906 209262 . + . ID=Phyra80942;Parent=Phyra80942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 206906 207136 . + 0 ID=Phyra80942;Parent=Phyra80942;rank=1 scaffold_54 . exon 206906 207136 . + . ID=Phyra80942.1;Parent=Phyra80942;constitutive=1;rank=1 scaffold_54 . CDS 207210 207324 . + 0 ID=Phyra80942;Parent=Phyra80942;rank=2 scaffold_54 . exon 207210 207324 . + . ID=Phyra80942.2;Parent=Phyra80942;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_54 . CDS 207398 207483 . + 0 ID=Phyra80942;Parent=Phyra80942;rank=3 scaffold_54 . exon 207398 207483 . + . ID=Phyra80942.3;Parent=Phyra80942;constitutive=1;ensembl_phase=1;rank=3 scaffold_54 . CDS 207558 207666 . + 0 ID=Phyra80942;Parent=Phyra80942;rank=4 scaffold_54 . exon 207558 207666 . + . ID=Phyra80942.4;Parent=Phyra80942;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_54 . CDS 207785 209262 . + 0 ID=Phyra80942;Parent=Phyra80942;rank=5 scaffold_54 . exon 207785 209262 . + . ID=Phyra80942.5;Parent=Phyra80942;constitutive=1;ensembl_phase=1;rank=5 scaffold_54 ensembl protein_coding_gene 209383 210945 . - . ID=Phyra80943;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000069;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 209383 210945 . - . ID=Phyra80943;Parent=Phyra80943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 209383 210945 . - 0 ID=Phyra80943;Parent=Phyra80943;rank=1 scaffold_54 . exon 209383 210945 . - . ID=Phyra80943.1;Parent=Phyra80943;constitutive=1;rank=1 scaffold_54 . repeat_region 215925 215951 . ? . description=trf scaffold_54 . repeat_region 218601 218629 . ? . description=dust scaffold_54 . repeat_region 221452 221460 . ? . description=dust scaffold_54 ensembl protein_coding_gene 221532 222158 . + . ID=Phyra71847;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_54000008;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 221532 222158 . + . ID=Phyra71847;Parent=Phyra71847;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 221532 222158 . + 0 ID=Phyra71847;Parent=Phyra71847;rank=1 scaffold_54 . exon 221532 222158 . + . ID=Phyra71847.1;Parent=Phyra71847;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 214429 215888 . + . ID=Phyra80944;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000070;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 214429 215888 . + . ID=Phyra80944;Parent=Phyra80944;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 214429 215439 . + 0 ID=Phyra80944;Parent=Phyra80944;rank=1 scaffold_54 . exon 214429 215439 . + . ID=Phyra80944.1;Parent=Phyra80944;constitutive=1;rank=1 scaffold_54 . CDS 215522 215640 . + 0 ID=Phyra80944;Parent=Phyra80944;rank=2 scaffold_54 . exon 215522 215640 . + . ID=Phyra80944.2;Parent=Phyra80944;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_54 . CDS 215696 215888 . + 0 ID=Phyra80944;Parent=Phyra80944;rank=3 scaffold_54 . exon 215696 215888 . + . ID=Phyra80944.3;Parent=Phyra80944;constitutive=1;ensembl_phase=2;rank=3 scaffold_54 ensembl protein_coding_gene 217002 218237 . + . ID=Phyra80945;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000071;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 217002 218237 . + . ID=Phyra80945;Parent=Phyra80945;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 217002 218237 . + 0 ID=Phyra80945;Parent=Phyra80945;rank=1 scaffold_54 . exon 217002 218237 . + . ID=Phyra80945.1;Parent=Phyra80945;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 222499 223059 . + . ID=Phyra80947;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000073;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 222499 223059 . + . ID=Phyra80947;Parent=Phyra80947;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 222499 223059 . + 0 ID=Phyra80947;Parent=Phyra80947;rank=1 scaffold_54 . exon 222499 223059 . + . ID=Phyra80947.1;Parent=Phyra80947;constitutive=1;rank=1 scaffold_54 . biological_region 226628 226630 0.999 + . logic_name=eponine scaffold_54 . biological_region 228305 228306 0.999 + . logic_name=eponine scaffold_54 ensembl protein_coding_gene 225034 226442 . - . ID=Phyra80948;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000074;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 225034 226442 . - . ID=Phyra80948;Parent=Phyra80948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 225034 225048 . - 0 ID=Phyra80948;Parent=Phyra80948;rank=6 scaffold_54 . exon 225034 225048 . - . ID=Phyra80948.6;Parent=Phyra80948;constitutive=1;rank=6 scaffold_54 . CDS 225129 225248 . - 0 ID=Phyra80948;Parent=Phyra80948;rank=5 scaffold_54 . exon 225129 225248 . - . ID=Phyra80948.5;Parent=Phyra80948;constitutive=1;rank=5 scaffold_54 . CDS 225327 225528 . - 0 ID=Phyra80948;Parent=Phyra80948;rank=4 scaffold_54 . exon 225327 225528 . - . ID=Phyra80948.4;Parent=Phyra80948;constitutive=1;ensembl_phase=2;rank=4 scaffold_54 . CDS 225556 225686 . - 0 ID=Phyra80948;Parent=Phyra80948;rank=3 scaffold_54 . exon 225556 225686 . - . ID=Phyra80948.3;Parent=Phyra80948;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_54 . CDS 225749 226217 . - 0 ID=Phyra80948;Parent=Phyra80948;rank=2 scaffold_54 . exon 225749 226217 . - . ID=Phyra80948.2;Parent=Phyra80948;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 226333 226442 . - 0 ID=Phyra80948;Parent=Phyra80948;rank=1 scaffold_54 . exon 226333 226442 . - . ID=Phyra80948.1;Parent=Phyra80948;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 ensembl protein_coding_gene 226724 233076 . + . ID=Phyra95856;biotype=protein_coding;external_name=C_scaffold_54000011;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 226724 233076 . + . ID=Phyra95856;Parent=Phyra95856;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 226724 227071 . + 0 ID=Phyra95856;Parent=Phyra95856;rank=1 scaffold_54 . exon 226724 227071 . + . ID=Phyra95856.1;Parent=Phyra95856;constitutive=1;rank=1 scaffold_54 . CDS 227135 227833 . + 0 ID=Phyra95856;Parent=Phyra95856;rank=2 scaffold_54 . exon 227135 227833 . + . ID=Phyra95856.2;Parent=Phyra95856;constitutive=1;rank=2 scaffold_54 . CDS 227966 228185 . + 0 ID=Phyra95856;Parent=Phyra95856;rank=3 scaffold_54 . exon 227966 228185 . + . ID=Phyra95856.3;Parent=Phyra95856;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_54 . CDS 228225 228635 . + 0 ID=Phyra95856;Parent=Phyra95856;rank=4 scaffold_54 . exon 228225 228635 . + . ID=Phyra95856.4;Parent=Phyra95856;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_54 . CDS 228963 229424 . + 0 ID=Phyra95856;Parent=Phyra95856;rank=5 scaffold_54 . exon 228963 229424 . + . ID=Phyra95856.5;Parent=Phyra95856;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_54 . CDS 229494 230182 . + 0 ID=Phyra95856;Parent=Phyra95856;rank=6 scaffold_54 . exon 229494 230182 . + . ID=Phyra95856.6;Parent=Phyra95856;constitutive=1;ensembl_phase=1;rank=6 scaffold_54 . CDS 230246 230506 . + 0 ID=Phyra95856;Parent=Phyra95856;rank=7 scaffold_54 . exon 230246 230506 . + . ID=Phyra95856.7;Parent=Phyra95856;constitutive=1;rank=7 scaffold_54 . CDS 230594 230672 . + 0 ID=Phyra95856;Parent=Phyra95856;rank=8 scaffold_54 . exon 230594 230672 . + . ID=Phyra95856.8;Parent=Phyra95856;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_54 . CDS 230754 231209 . + 0 ID=Phyra95856;Parent=Phyra95856;rank=9 scaffold_54 . exon 230754 231209 . + . ID=Phyra95856.9;Parent=Phyra95856;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_54 . CDS 231360 231674 . + 0 ID=Phyra95856;Parent=Phyra95856;rank=10 scaffold_54 . exon 231360 231674 . + . ID=Phyra95856.10;Parent=Phyra95856;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_54 . CDS 231792 231946 . + 0 ID=Phyra95856;Parent=Phyra95856;rank=11 scaffold_54 . exon 231792 231946 . + . ID=Phyra95856.11;Parent=Phyra95856;constitutive=1;ensembl_phase=1;rank=11 scaffold_54 . CDS 231974 232848 . + 0 ID=Phyra95856;Parent=Phyra95856;rank=12 scaffold_54 . exon 231974 232848 . + . ID=Phyra95856.12;Parent=Phyra95856;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_54 . CDS 233028 233076 . + 0 ID=Phyra95856;Parent=Phyra95856;rank=13 scaffold_54 . exon 233028 233076 . + . ID=Phyra95856.13;Parent=Phyra95856;constitutive=1;ensembl_phase=2;rank=13 scaffold_54 . repeat_region 236408 236415 . ? . description=dust scaffold_54 ensembl protein_coding_gene 242401 243282 . - . ID=Phyra71848;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_54000009;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 242401 243282 . - . ID=Phyra71848;Parent=Phyra71848;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 242401 243282 . - 0 ID=Phyra71848;Parent=Phyra71848;rank=1 scaffold_54 . exon 242401 243282 . - . ID=Phyra71848.1;Parent=Phyra71848;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 234112 235095 . - . ID=Phyra80950;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000076;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 234112 235095 . - . ID=Phyra80950;Parent=Phyra80950;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 234112 235095 . - 0 ID=Phyra80950;Parent=Phyra80950;rank=1 scaffold_54 . exon 234112 235095 . - . ID=Phyra80950.1;Parent=Phyra80950;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 236672 237823 . + . ID=Phyra95859;biotype=protein_coding;external_name=C_scaffold_54000014;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 236672 237823 . + . ID=Phyra95859;Parent=Phyra95859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 236672 236769 . + 0 ID=Phyra95859;Parent=Phyra95859;rank=1 scaffold_54 . exon 236672 236769 . + . ID=Phyra95859.1;Parent=Phyra95859;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 236911 237823 . + 0 ID=Phyra95859;Parent=Phyra95859;rank=2 scaffold_54 . exon 236911 237823 . + . ID=Phyra95859.2;Parent=Phyra95859;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 ensembl protein_coding_gene 237913 240232 . - . ID=Phyra95860;biotype=protein_coding;external_name=C_scaffold_54000015;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 237913 240232 . - . ID=Phyra95860;Parent=Phyra95860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 237913 238005 . - 0 ID=Phyra95860;Parent=Phyra95860;rank=6 scaffold_54 . exon 237913 238005 . - . ID=Phyra95860.6;Parent=Phyra95860;constitutive=1;rank=6 scaffold_54 . CDS 238069 238666 . - 0 ID=Phyra95860;Parent=Phyra95860;rank=5 scaffold_54 . exon 238069 238666 . - . ID=Phyra95860.5;Parent=Phyra95860;constitutive=1;ensembl_phase=2;rank=5 scaffold_54 . CDS 238730 238989 . - 0 ID=Phyra95860;Parent=Phyra95860;rank=4 scaffold_54 . exon 238730 238989 . - . ID=Phyra95860.4;Parent=Phyra95860;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_54 . CDS 239073 239197 . - 0 ID=Phyra95860;Parent=Phyra95860;rank=3 scaffold_54 . exon 239073 239197 . - . ID=Phyra95860.3;Parent=Phyra95860;constitutive=1;ensembl_phase=1;rank=3 scaffold_54 . CDS 239302 239414 . - 0 ID=Phyra95860;Parent=Phyra95860;rank=2 scaffold_54 . exon 239302 239414 . - . ID=Phyra95860.2;Parent=Phyra95860;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 239454 240232 . - 0 ID=Phyra95860;Parent=Phyra95860;rank=1 scaffold_54 . exon 239454 240232 . - . ID=Phyra95860.1;Parent=Phyra95860;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . biological_region 244967 244969 0.999 + . logic_name=eponine scaffold_54 . biological_region 245000 245003 0.999 - . logic_name=eponine scaffold_54 . repeat_region 247083 247119 . ? . description=trf scaffold_54 ensembl protein_coding_gene 243764 244519 . + . ID=Phyra80954;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000080;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 243764 244519 . + . ID=Phyra80954;Parent=Phyra80954;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 243764 244519 . + 0 ID=Phyra80954;Parent=Phyra80954;rank=1 scaffold_54 . exon 243764 244519 . + . ID=Phyra80954.1;Parent=Phyra80954;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 244847 245203 . - . ID=Phyra80955;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000081;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 244847 245203 . - . ID=Phyra80955;Parent=Phyra80955;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 244847 245203 . - 0 ID=Phyra80955;Parent=Phyra80955;rank=1 scaffold_54 . exon 244847 245203 . - . ID=Phyra80955.1;Parent=Phyra80955;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 247825 249561 . + . ID=Phyra80956;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000082;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 247825 249561 . + . ID=Phyra80956;Parent=Phyra80956;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 247825 249561 . + 0 ID=Phyra80956;Parent=Phyra80956;rank=1 scaffold_54 . exon 247825 249561 . + . ID=Phyra80956.1;Parent=Phyra80956;constitutive=1;rank=1 scaffold_54 . repeat_region 252907 252914 . ? . description=dust scaffold_54 ensembl protein_coding_gene 258854 259736 . + . ID=Phyra95861;biotype=protein_coding;external_name=C_scaffold_54000016;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 258854 259736 . + . ID=Phyra95861;Parent=Phyra95861;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 258854 259083 . + 0 ID=Phyra95861;Parent=Phyra95861;rank=1 scaffold_54 . exon 258854 259083 . + . ID=Phyra95861.1;Parent=Phyra95861;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 259141 259570 . + 0 ID=Phyra95861;Parent=Phyra95861;rank=2 scaffold_54 . exon 259141 259570 . + . ID=Phyra95861.2;Parent=Phyra95861;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 259716 259736 . + 0 ID=Phyra95861;Parent=Phyra95861;rank=3 scaffold_54 . exon 259716 259736 . + . ID=Phyra95861.3;Parent=Phyra95861;constitutive=1;rank=3 scaffold_54 ensembl protein_coding_gene 259878 265791 . - . ID=Phyra95862;biotype=protein_coding;external_name=C_scaffold_54000017;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 259878 265791 . - . ID=Phyra95862;Parent=Phyra95862;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 259878 260356 . - 0 ID=Phyra95862;Parent=Phyra95862;rank=15 scaffold_54 . exon 259878 260356 . - . ID=Phyra95862.15;Parent=Phyra95862;constitutive=1;ensembl_phase=1;rank=15 scaffold_54 . CDS 260516 261256 . - 0 ID=Phyra95862;Parent=Phyra95862;rank=14 scaffold_54 . exon 260516 261256 . - . ID=Phyra95862.14;Parent=Phyra95862;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_54 . CDS 261317 262036 . - 0 ID=Phyra95862;Parent=Phyra95862;rank=13 scaffold_54 . exon 261317 262036 . - . ID=Phyra95862.13;Parent=Phyra95862;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_54 . CDS 262079 262203 . - 0 ID=Phyra95862;Parent=Phyra95862;rank=12 scaffold_54 . exon 262079 262203 . - . ID=Phyra95862.12;Parent=Phyra95862;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_54 . CDS 262240 262351 . - 0 ID=Phyra95862;Parent=Phyra95862;rank=11 scaffold_54 . exon 262240 262351 . - . ID=Phyra95862.11;Parent=Phyra95862;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_54 . CDS 262409 262606 . - 0 ID=Phyra95862;Parent=Phyra95862;rank=10 scaffold_54 . CDS 262689 262701 . - 0 ID=Phyra95862;Parent=Phyra95862;rank=9 scaffold_54 . CDS 262833 263237 . - 0 ID=Phyra95862;Parent=Phyra95862;rank=8 scaffold_54 . CDS 263301 263972 . - 0 ID=Phyra95862;Parent=Phyra95862;rank=7 scaffold_54 . CDS 264120 264569 . - 0 ID=Phyra95862;Parent=Phyra95862;rank=6 scaffold_54 . CDS 264632 264715 . - 0 ID=Phyra95862;Parent=Phyra95862;rank=5 scaffold_54 . CDS 264785 264943 . - 0 ID=Phyra95862;Parent=Phyra95862;rank=4 scaffold_54 . CDS 265006 265104 . - 0 ID=Phyra95862;Parent=Phyra95862;rank=3 scaffold_54 . CDS 265174 265646 . - 0 ID=Phyra95862;Parent=Phyra95862;rank=2 scaffold_54 . CDS 265713 265791 . - 0 ID=Phyra95862;Parent=Phyra95862;rank=1 scaffold_54 . repeat_region 270347 270694 . ? . description=trf scaffold_54 . repeat_region 270551 270602 . ? . description=trf scaffold_54 . repeat_region 270593 270741 . ? . description=trf scaffold_54 . repeat_region 270784 270828 . ? . description=trf scaffold_54 . repeat_region 270915 271093 . ? . description=trf scaffold_54 ensembl protein_coding_gene 268576 269706 . - . ID=Phyra80958;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000084;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 268576 269706 . - . ID=Phyra80958;Parent=Phyra80958;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 268576 269706 . - 0 ID=Phyra80958;Parent=Phyra80958;rank=1 scaffold_54 . exon 268576 269706 . - . ID=Phyra80958.1;Parent=Phyra80958;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 270161 270820 . + . ID=Phyra80959;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000085;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 270161 270820 . + . ID=Phyra80959;Parent=Phyra80959;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 270161 270251 . + 0 ID=Phyra80959;Parent=Phyra80959;rank=1 scaffold_54 . exon 270161 270251 . + . ID=Phyra80959.1;Parent=Phyra80959;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 . CDS 270333 270820 . + 0 ID=Phyra80959;Parent=Phyra80959;rank=2 scaffold_54 . exon 270333 270820 . + . ID=Phyra80959.2;Parent=Phyra80959;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 . exon 262409 262606 . - . ID=Phyra95862.10;Parent=Phyra95862;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_54 . exon 262689 262701 . - . ID=Phyra95862.9;Parent=Phyra95862;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_54 . exon 262833 263237 . - . ID=Phyra95862.8;Parent=Phyra95862;constitutive=1;rank=8 scaffold_54 . exon 263301 263972 . - . ID=Phyra95862.7;Parent=Phyra95862;constitutive=1;rank=7 scaffold_54 . exon 264120 264569 . - . ID=Phyra95862.6;Parent=Phyra95862;constitutive=1;rank=6 scaffold_54 . exon 264632 264715 . - . ID=Phyra95862.5;Parent=Phyra95862;constitutive=1;rank=5 scaffold_54 . exon 264785 264943 . - . ID=Phyra95862.4;Parent=Phyra95862;constitutive=1;rank=4 scaffold_54 . exon 265006 265104 . - . ID=Phyra95862.3;Parent=Phyra95862;constitutive=1;rank=3 scaffold_54 . exon 265174 265646 . - . ID=Phyra95862.2;Parent=Phyra95862;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 . exon 265713 265791 . - . ID=Phyra95862.1;Parent=Phyra95862;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 . repeat_region 278254 278303 . ? . description=dust scaffold_54 . biological_region 279117 279117 0.999 + . logic_name=eponine scaffold_54 . biological_region 279141 279144 0.999 - . logic_name=eponine scaffold_54 . repeat_region 279239 284007 . ? . description=dust scaffold_54 ensembl protein_coding_gene 272982 273359 . - . ID=Phyra80960;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000086;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 272982 273359 . - . ID=Phyra80960;Parent=Phyra80960;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 272982 273359 . - 0 ID=Phyra80960;Parent=Phyra80960;rank=1 scaffold_54 . exon 272982 273359 . - . ID=Phyra80960.1;Parent=Phyra80960;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 278724 279089 . - . ID=Phyra80961;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000087;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 278724 279089 . - . ID=Phyra80961;Parent=Phyra80961;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 278724 279089 . - 0 ID=Phyra80961;Parent=Phyra80961;rank=1 scaffold_54 . exon 278724 279089 . - . ID=Phyra80961.1;Parent=Phyra80961;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 286281 287822 . + . ID=Phyra80962;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000088;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 286281 287822 . + . ID=Phyra80962;Parent=Phyra80962;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 286281 287822 . + 0 ID=Phyra80962;Parent=Phyra80962;rank=1 scaffold_54 . exon 286281 287822 . + . ID=Phyra80962.1;Parent=Phyra80962;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 288630 289881 . + . ID=Phyra80963;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000089;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 288630 289881 . + . ID=Phyra80963;Parent=Phyra80963;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 288630 288712 . + 0 ID=Phyra80963;Parent=Phyra80963;rank=1 scaffold_54 . exon 288630 288712 . + . ID=Phyra80963.1;Parent=Phyra80963;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 288783 289881 . + 0 ID=Phyra80963;Parent=Phyra80963;rank=2 scaffold_54 . exon 288783 289881 . + . ID=Phyra80963.2;Parent=Phyra80963;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . biological_region 294002 294005 0.999 + . logic_name=eponine scaffold_54 . biological_region 294029 294029 0.999 - . logic_name=eponine scaffold_54 . repeat_region 299018 299042 . ? . description=trf scaffold_54 . repeat_region 299018 299042 . ? . description=dust scaffold_54 . repeat_region 299369 299378 . ? . description=dust scaffold_54 . biological_region 300269 300275 0.999 - . logic_name=eponine scaffold_54 ensembl protein_coding_gene 299950 301335 . + . ID=Phyra71849;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_54000010;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 299950 301335 . + . ID=Phyra71849;Parent=Phyra71849;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 299950 300102 . + 0 ID=Phyra71849;Parent=Phyra71849;rank=1 scaffold_54 . exon 299950 300102 . + . ID=Phyra71849.1;Parent=Phyra71849;constitutive=1;rank=1 scaffold_54 . CDS 300124 301335 . + 0 ID=Phyra71849;Parent=Phyra71849;rank=2 scaffold_54 . exon 300124 301335 . + . ID=Phyra71849.2;Parent=Phyra71849;constitutive=1;rank=2 scaffold_54 ensembl protein_coding_gene 294559 296964 . - . ID=Phyra80965;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000091;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 294559 296964 . - . ID=Phyra80965;Parent=Phyra80965;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 294559 296964 . - 0 ID=Phyra80965;Parent=Phyra80965;rank=1 scaffold_54 . exon 294559 296964 . - . ID=Phyra80965.1;Parent=Phyra80965;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 293170 294421 . + . ID=Phyra95864;biotype=protein_coding;external_name=C_scaffold_54000019;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 293170 294421 . + . ID=Phyra95864;Parent=Phyra95864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 293170 293252 . + 0 ID=Phyra95864;Parent=Phyra95864;rank=1 scaffold_54 . exon 293170 293252 . + . ID=Phyra95864.1;Parent=Phyra95864;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 293323 293899 . + 0 ID=Phyra95864;Parent=Phyra95864;rank=2 scaffold_54 . exon 293323 293899 . + . ID=Phyra95864.2;Parent=Phyra95864;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 293936 294421 . + 0 ID=Phyra95864;Parent=Phyra95864;rank=3 scaffold_54 . exon 293936 294421 . + . ID=Phyra95864.3;Parent=Phyra95864;constitutive=1;rank=3 scaffold_54 ensembl protein_coding_gene 301855 302436 . - . ID=Phyra95867;biotype=protein_coding;external_name=C_scaffold_54000022;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 301855 302436 . - . ID=Phyra95867;Parent=Phyra95867;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 301855 302139 . - 0 ID=Phyra95867;Parent=Phyra95867;rank=2 scaffold_54 . exon 301855 302139 . - . ID=Phyra95867.2;Parent=Phyra95867;constitutive=1;rank=2 scaffold_54 . CDS 302434 302436 . - 0 ID=Phyra95867;Parent=Phyra95867;rank=1 scaffold_54 . exon 302434 302436 . - . ID=Phyra95867.1;Parent=Phyra95867;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 302731 307403 . + . ID=Phyra95868;biotype=protein_coding;external_name=C_scaffold_54000023;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 302731 307403 . + . ID=Phyra95868;Parent=Phyra95868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 302731 302755 . + 0 ID=Phyra95868;Parent=Phyra95868;rank=1 scaffold_54 . exon 302731 302755 . + . ID=Phyra95868.1;Parent=Phyra95868;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 . CDS 302873 302991 . + 0 ID=Phyra95868;Parent=Phyra95868;rank=2 scaffold_54 . exon 302873 302991 . + . ID=Phyra95868.2;Parent=Phyra95868;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 . CDS 303060 303434 . + 0 ID=Phyra95868;Parent=Phyra95868;rank=3 scaffold_54 . exon 303060 303434 . + . ID=Phyra95868.3;Parent=Phyra95868;constitutive=1;rank=3 scaffold_54 . CDS 303509 303899 . + 0 ID=Phyra95868;Parent=Phyra95868;rank=4 scaffold_54 . exon 303509 303899 . + . ID=Phyra95868.4;Parent=Phyra95868;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_54 . CDS 304038 304190 . + 0 ID=Phyra95868;Parent=Phyra95868;rank=5 scaffold_54 . exon 304038 304190 . + . ID=Phyra95868.5;Parent=Phyra95868;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_54 . CDS 304770 305195 . + 0 ID=Phyra95868;Parent=Phyra95868;rank=6 scaffold_54 . exon 304770 305195 . + . ID=Phyra95868.6;Parent=Phyra95868;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_54 . CDS 305340 305470 . + 0 ID=Phyra95868;Parent=Phyra95868;rank=7 scaffold_54 . exon 305340 305470 . + . ID=Phyra95868.7;Parent=Phyra95868;constitutive=1;ensembl_phase=1;rank=7 scaffold_54 . CDS 305576 305659 . + 0 ID=Phyra95868;Parent=Phyra95868;rank=8 scaffold_54 . exon 305576 305659 . + . ID=Phyra95868.8;Parent=Phyra95868;constitutive=1;rank=8 scaffold_54 . CDS 305918 306284 . + 0 ID=Phyra95868;Parent=Phyra95868;rank=9 scaffold_54 . exon 305918 306284 . + . ID=Phyra95868.9;Parent=Phyra95868;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_54 . CDS 306492 306993 . + 0 ID=Phyra95868;Parent=Phyra95868;rank=10 scaffold_54 . exon 306492 306993 . + . ID=Phyra95868.10;Parent=Phyra95868;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_54 . CDS 307102 307141 . + 0 ID=Phyra95868;Parent=Phyra95868;rank=11 scaffold_54 . exon 307102 307141 . + . ID=Phyra95868.11;Parent=Phyra95868;constitutive=1;ensembl_phase=2;rank=11 scaffold_54 . CDS 307362 307403 . + 0 ID=Phyra95868;Parent=Phyra95868;rank=12 scaffold_54 . exon 307362 307403 . + . ID=Phyra95868.12;Parent=Phyra95868;constitutive=1;rank=12 scaffold_54 . repeat_region 315899 315906 . ? . description=dust scaffold_54 . biological_region 317415 317420 0.999 - . logic_name=eponine scaffold_54 . biological_region 318096 318096 0.999 - . logic_name=eponine scaffold_54 ensembl protein_coding_gene 314035 315738 . + . ID=Phyra80968;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000094;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 314035 315738 . + . ID=Phyra80968;Parent=Phyra80968;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 314035 315738 . + 0 ID=Phyra80968;Parent=Phyra80968;rank=1 scaffold_54 . exon 314035 315738 . + . ID=Phyra80968.1;Parent=Phyra80968;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 317919 319217 . + . ID=Phyra80969;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000095;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 317919 319217 . + . ID=Phyra80969;Parent=Phyra80969;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 317919 319217 . + 0 ID=Phyra80969;Parent=Phyra80969;rank=1 scaffold_54 . exon 317919 319217 . + . ID=Phyra80969.1;Parent=Phyra80969;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 319491 322073 . - . ID=Phyra80970;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000096;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 319491 322073 . - . ID=Phyra80970;Parent=Phyra80970;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 319491 320839 . - 0 ID=Phyra80970;Parent=Phyra80970;rank=6 scaffold_54 . exon 319491 320839 . - . ID=Phyra80970.6;Parent=Phyra80970;constitutive=1;ensembl_phase=1;rank=6 scaffold_54 . CDS 320932 320992 . - 0 ID=Phyra80970;Parent=Phyra80970;rank=5 scaffold_54 . CDS 321012 321076 . - 0 ID=Phyra80970;Parent=Phyra80970;rank=4 scaffold_54 . CDS 321116 321283 . - 0 ID=Phyra80970;Parent=Phyra80970;rank=3 scaffold_54 . CDS 321376 321470 . - 0 ID=Phyra80970;Parent=Phyra80970;rank=2 scaffold_54 . CDS 321535 322073 . - 0 ID=Phyra80970;Parent=Phyra80970;rank=1 scaffold_54 . repeat_region 329248 329290 . ? . description=trf scaffold_54 . exon 320932 320992 . - . ID=Phyra80970.5;Parent=Phyra80970;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_54 . exon 321012 321076 . - . ID=Phyra80970.4;Parent=Phyra80970;constitutive=1;ensembl_phase=1;rank=4 scaffold_54 . exon 321116 321283 . - . ID=Phyra80970.3;Parent=Phyra80970;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_54 . exon 321376 321470 . - . ID=Phyra80970.2;Parent=Phyra80970;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_54 . exon 321535 322073 . - . ID=Phyra80970.1;Parent=Phyra80970;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 ensembl protein_coding_gene 322812 323348 . - . ID=Phyra80971;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000097;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 322812 323348 . - . ID=Phyra80971;Parent=Phyra80971;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 322812 323348 . - 0 ID=Phyra80971;Parent=Phyra80971;rank=1 scaffold_54 . exon 322812 323348 . - . ID=Phyra80971.1;Parent=Phyra80971;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 323785 326649 . - . ID=Phyra80972;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_54000098;logic_name=jgi_phyra1 scaffold_54 ensembl transcript 323785 326649 . - . ID=Phyra80972;Parent=Phyra80972;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_54 . CDS 323785 326649 . - 0 ID=Phyra80972;Parent=Phyra80972;rank=1 scaffold_54 . exon 323785 326649 . - . ID=Phyra80972.1;Parent=Phyra80972;constitutive=1;rank=1 scaffold_54 . repeat_region 334387 334400 . ? . description=dust scaffold_54 . biological_region 334710 334711 0.999 - . logic_name=eponine scaffold_54 . repeat_region 336845 338848 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_53 1 347111 scaffold_53 . repeat_region 289 1042 . + . description=GypsyPi-1c_I-int scaffold_53 . repeat_region 1419 2442 . ? . description=dust scaffold_53 . biological_region 2774 2777 0.999 + . logic_name=eponine scaffold_53 . biological_region 2867 2868 0.999 - . logic_name=eponine scaffold_53 . biological_region 2957 2962 0.999 + . logic_name=eponine scaffold_53 . repeat_region 4015 4041 . ? . description=trf scaffold_53 . repeat_region 4136 4193 . ? . description=trf scaffold_53 . repeat_region 4798 4824 . ? . description=trf scaffold_53 . repeat_region 5796 5808 . ? . description=dust scaffold_53 . biological_region 7915 7920 0.999 - . logic_name=eponine scaffold_53 ensembl protein_coding_gene 2767 3421 . - . ID=Phyra80808;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000001;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 2767 3421 . - . ID=Phyra80808;Parent=Phyra80808;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 2767 2788 . - 0 ID=Phyra80808;Parent=Phyra80808;rank=2 scaffold_53 . exon 2767 2788 . - . ID=Phyra80808.2;Parent=Phyra80808;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 . CDS 2838 3421 . - 0 ID=Phyra80808;Parent=Phyra80808;rank=1 scaffold_53 . exon 2838 3421 . - . ID=Phyra80808.1;Parent=Phyra80808;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 ensembl protein_coding_gene 13428 14300 . + . ID=Phyra71834;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_53000001;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 13428 14300 . + . ID=Phyra71834;Parent=Phyra71834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 13428 14300 . + 0 ID=Phyra71834;Parent=Phyra71834;rank=1 scaffold_53 . exon 13428 14300 . + . ID=Phyra71834.1;Parent=Phyra71834;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 14477 14917 . + . ID=Phyra80810;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000003;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 14477 14917 . + . ID=Phyra80810;Parent=Phyra80810;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 14477 14917 . + 0 ID=Phyra80810;Parent=Phyra80810;rank=1 scaffold_53 . exon 14477 14917 . + . ID=Phyra80810.1;Parent=Phyra80810;constitutive=1;rank=1 scaffold_53 . biological_region 20705 20708 0.999 + . logic_name=eponine scaffold_53 . biological_region 20816 20820 0.999 - . logic_name=eponine scaffold_53 . repeat_region 24486 24516 . ? . description=trf scaffold_53 . biological_region 26325 26334 0.999 + . logic_name=eponine scaffold_53 . biological_region 26361 26366 0.999 - . logic_name=eponine scaffold_53 ensembl protein_coding_gene 26300 26767 . + . ID=Phyra50493;biotype=protein_coding;external_name=gwEuk.53.44.1;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 26300 26767 . + . ID=Phyra50493;Parent=Phyra50493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 26300 26767 . + 0 ID=Phyra50493;Parent=Phyra50493;rank=1 scaffold_53 . exon 26300 26767 . + . ID=Phyra50493.1;Parent=Phyra50493;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 20626 23358 . + . ID=Phyra80811;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000004;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 20626 23358 . + . ID=Phyra80811;Parent=Phyra80811;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 20626 23358 . + 0 ID=Phyra80811;Parent=Phyra80811;rank=1 scaffold_53 . exon 20626 23358 . + . ID=Phyra80811.1;Parent=Phyra80811;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 23653 25977 . - . ID=Phyra80812;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000005;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 23653 25977 . - . ID=Phyra80812;Parent=Phyra80812;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 23653 23706 . - 0 ID=Phyra80812;Parent=Phyra80812;rank=5 scaffold_53 . exon 23653 23706 . - . ID=Phyra80812.5;Parent=Phyra80812;constitutive=1;rank=5 scaffold_53 . CDS 23776 24684 . - 0 ID=Phyra80812;Parent=Phyra80812;rank=4 scaffold_53 . exon 23776 24684 . - . ID=Phyra80812.4;Parent=Phyra80812;constitutive=1;rank=4 scaffold_53 . CDS 24829 25353 . - 0 ID=Phyra80812;Parent=Phyra80812;rank=3 scaffold_53 . exon 24829 25353 . - . ID=Phyra80812.3;Parent=Phyra80812;constitutive=1;rank=3 scaffold_53 . CDS 25451 25576 . - 0 ID=Phyra80812;Parent=Phyra80812;rank=2 scaffold_53 . exon 25451 25576 . - . ID=Phyra80812.2;Parent=Phyra80812;constitutive=1;rank=2 scaffold_53 . CDS 25808 25975 . - 0 ID=Phyra80812;Parent=Phyra80812;rank=1 scaffold_53 . exon 25808 25977 . - . ID=Phyra80812.1;Parent=Phyra80812;constitutive=1;ensembl_phase=-1;rank=1 scaffold_53 ensembl protein_coding_gene 26972 33198 . - . ID=Phyra80814;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000007;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 26972 33198 . - . ID=Phyra80814;Parent=Phyra80814;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 26972 33198 . - 0 ID=Phyra80814;Parent=Phyra80814;rank=1 scaffold_53 . exon 26972 33198 . - . ID=Phyra80814.1;Parent=Phyra80814;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 . repeat_region 36551 36564 . ? . description=dust scaffold_53 ensembl protein_coding_gene 35005 37280 . - . ID=Phyra80815;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000008;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 35005 37280 . - . ID=Phyra80815;Parent=Phyra80815;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 35005 35049 . - 0 ID=Phyra80815;Parent=Phyra80815;rank=5 scaffold_53 . exon 35005 35049 . - . ID=Phyra80815.5;Parent=Phyra80815;constitutive=1;rank=5 scaffold_53 . CDS 35261 35976 . - 0 ID=Phyra80815;Parent=Phyra80815;rank=4 scaffold_53 . exon 35261 35976 . - . ID=Phyra80815.4;Parent=Phyra80815;constitutive=1;ensembl_phase=1;rank=4 scaffold_53 . CDS 36304 36358 . - 0 ID=Phyra80815;Parent=Phyra80815;rank=3 scaffold_53 . exon 36304 36358 . - . ID=Phyra80815.3;Parent=Phyra80815;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_53 . CDS 36733 37021 . - 0 ID=Phyra80815;Parent=Phyra80815;rank=2 scaffold_53 . exon 36733 37021 . - . ID=Phyra80815.2;Parent=Phyra80815;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 . CDS 37093 37280 . - 0 ID=Phyra80815;Parent=Phyra80815;rank=1 scaffold_53 . exon 37093 37280 . - . ID=Phyra80815.1;Parent=Phyra80815;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 ensembl protein_coding_gene 38023 38388 . - . ID=Phyra80816;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000009;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 38023 38388 . - . ID=Phyra80816;Parent=Phyra80816;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 38023 38388 . - 0 ID=Phyra80816;Parent=Phyra80816;rank=1 scaffold_53 . exon 38023 38388 . - . ID=Phyra80816.1;Parent=Phyra80816;constitutive=1;rank=1 scaffold_53 . repeat_region 47107 47294 . + . description=GypsyPi-1c_LTR scaffold_53 . biological_region 47609 47609 0.999 + . logic_name=eponine scaffold_53 . biological_region 48073 48077 0.999 - . logic_name=eponine scaffold_53 ensembl protein_coding_gene 42235 43245 . + . ID=Phyra80817;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000010;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 42235 43245 . + . ID=Phyra80817;Parent=Phyra80817;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 42235 43245 . + 0 ID=Phyra80817;Parent=Phyra80817;rank=1 scaffold_53 . exon 42235 43245 . + . ID=Phyra80817.1;Parent=Phyra80817;constitutive=1;rank=1 scaffold_53 . repeat_region 51332 51341 . ? . description=dust scaffold_53 . repeat_region 54651 54672 . ? . description=trf scaffold_53 ensembl snRNA_gene 53153 53288 . - . ID=EPrPRAG00000000194;biotype=snRNA;description=U4 spliceosomal RNA [Source:RFAM%3BAcc:RF00015];external_name=U4;logic_name=ncrna_eg scaffold_53 ensembl snRNA 53153 53288 . - . ID=EPrPRAT00000000194;Parent=EPrPRAG00000000194;biotype=snRNA;logic_name=ncrna_eg scaffold_53 . exon 53153 53288 . - . ID=EPrPRAE00000000194;Parent=EPrPRAT00000000194;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 ensembl protein_coding_gene 53457 54179 . + . ID=Phyra80818;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000011;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 53457 54179 . + . ID=Phyra80818;Parent=Phyra80818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 53457 53498 . + 0 ID=Phyra80818;Parent=Phyra80818;rank=1 scaffold_53 . exon 53457 53498 . + . ID=Phyra80818.1;Parent=Phyra80818;constitutive=1;rank=1 scaffold_53 . CDS 53570 53636 . + 0 ID=Phyra80818;Parent=Phyra80818;rank=2 scaffold_53 . exon 53570 53636 . + . ID=Phyra80818.2;Parent=Phyra80818;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_53 . CDS 53711 53763 . + 0 ID=Phyra80818;Parent=Phyra80818;rank=3 scaffold_53 . exon 53711 53763 . + . ID=Phyra80818.3;Parent=Phyra80818;constitutive=1;ensembl_phase=1;rank=3 scaffold_53 . CDS 53841 54040 . + 0 ID=Phyra80818;Parent=Phyra80818;rank=4 scaffold_53 . exon 53841 54040 . + . ID=Phyra80818.4;Parent=Phyra80818;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_53 . CDS 54116 54179 . + 0 ID=Phyra80818;Parent=Phyra80818;rank=5 scaffold_53 . exon 54116 54179 . + . ID=Phyra80818.5;Parent=Phyra80818;constitutive=1;ensembl_phase=2;rank=5 scaffold_53 ensembl protein_coding_gene 55104 56133 . - . ID=Phyra80819;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000012;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 55104 56133 . - . ID=Phyra80819;Parent=Phyra80819;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 55104 55318 . - 0 ID=Phyra80819;Parent=Phyra80819;rank=4 scaffold_53 . exon 55104 55318 . - . ID=Phyra80819.4;Parent=Phyra80819;constitutive=1;ensembl_phase=1;rank=4 scaffold_53 . CDS 55386 55619 . - 0 ID=Phyra80819;Parent=Phyra80819;rank=3 scaffold_53 . exon 55386 55619 . - . ID=Phyra80819.3;Parent=Phyra80819;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_53 . CDS 55683 55700 . - 0 ID=Phyra80819;Parent=Phyra80819;rank=2 scaffold_53 . exon 55683 55700 . - . ID=Phyra80819.2;Parent=Phyra80819;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_53 . CDS 55911 56133 . - 0 ID=Phyra80819;Parent=Phyra80819;rank=1 scaffold_53 . exon 55911 56133 . - . ID=Phyra80819.1;Parent=Phyra80819;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 ensembl protein_coding_gene 56384 62860 . + . ID=Phyra80820;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000013;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 56384 62860 . + . ID=Phyra80820;Parent=Phyra80820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 56384 62860 . + 0 ID=Phyra80820;Parent=Phyra80820;rank=1 scaffold_53 . exon 56384 62860 . + . ID=Phyra80820.1;Parent=Phyra80820;constitutive=1;rank=1 scaffold_53 . biological_region 63104 63106 0.999 + . logic_name=eponine scaffold_53 . biological_region 63958 63961 0.999 + . logic_name=eponine scaffold_53 . biological_region 64045 64046 0.999 + . logic_name=eponine scaffold_53 . biological_region 66097 66100 0.999 + . logic_name=eponine scaffold_53 . biological_region 66177 66179 0.999 - . logic_name=eponine scaffold_53 . biological_region 66248 66250 0.999 - . logic_name=eponine scaffold_53 . biological_region 66289 66292 0.999 - . logic_name=eponine scaffold_53 . biological_region 66660 66662 0.999 - . logic_name=eponine scaffold_53 . biological_region 68369 68371 0.999 - . logic_name=eponine scaffold_53 . biological_region 68468 68469 0.999 - . logic_name=eponine scaffold_53 ensembl protein_coding_gene 62921 63417 . - . ID=Phyra80821;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000014;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 62921 63417 . - . ID=Phyra80821;Parent=Phyra80821;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 62921 63341 . - 0 ID=Phyra80821;Parent=Phyra80821;rank=2 scaffold_53 . exon 62921 63341 . - . ID=Phyra80821.2;Parent=Phyra80821;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 . CDS 63407 63417 . - 0 ID=Phyra80821;Parent=Phyra80821;rank=1 scaffold_53 . exon 63407 63417 . - . ID=Phyra80821.1;Parent=Phyra80821;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 ensembl protein_coding_gene 63835 64644 . + . ID=Phyra80822;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000015;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 63835 64644 . + . ID=Phyra80822;Parent=Phyra80822;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 63835 64644 . + 0 ID=Phyra80822;Parent=Phyra80822;rank=1 scaffold_53 . exon 63835 64644 . + . ID=Phyra80822.1;Parent=Phyra80822;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 65838 72658 . - . ID=Phyra80823;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000016;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 65838 72658 . - . ID=Phyra80823;Parent=Phyra80823;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 65838 68111 . - 0 ID=Phyra80823;Parent=Phyra80823;rank=5 scaffold_53 . exon 65838 68111 . - . ID=Phyra80823.5;Parent=Phyra80823;constitutive=1;rank=5 scaffold_53 . CDS 68194 68603 . - 0 ID=Phyra80823;Parent=Phyra80823;rank=4 scaffold_53 . exon 68194 68603 . - . ID=Phyra80823.4;Parent=Phyra80823;constitutive=1;ensembl_phase=1;rank=4 scaffold_53 . CDS 68835 69290 . - 0 ID=Phyra80823;Parent=Phyra80823;rank=3 scaffold_53 . exon 68835 69290 . - . ID=Phyra80823.3;Parent=Phyra80823;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_53 . CDS 69315 72207 . - 0 ID=Phyra80823;Parent=Phyra80823;rank=2 scaffold_53 . exon 69315 72207 . - . ID=Phyra80823.2;Parent=Phyra80823;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_53 . CDS 72302 72658 . - 0 ID=Phyra80823;Parent=Phyra80823;rank=1 scaffold_53 . repeat_region 69943 69973 . ? . description=trf scaffold_53 . exon 72302 72658 . - . ID=Phyra80823.1;Parent=Phyra80823;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 73919 75637 . + . ID=Phyra80824;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000017;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 73919 75637 . + . ID=Phyra80824;Parent=Phyra80824;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 73919 75637 . + 0 ID=Phyra80824;Parent=Phyra80824;rank=1 scaffold_53 . exon 73919 75637 . + . ID=Phyra80824.1;Parent=Phyra80824;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 77079 84492 . - . ID=Phyra80825;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000018;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 77079 84492 . - . ID=Phyra80825;Parent=Phyra80825;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 77079 83373 . - 0 ID=Phyra80825;Parent=Phyra80825;rank=4 scaffold_53 . exon 77079 83373 . - . ID=Phyra80825.4;Parent=Phyra80825;constitutive=1;ensembl_phase=2;rank=4 scaffold_53 . CDS 83513 83592 . - 0 ID=Phyra80825;Parent=Phyra80825;rank=3 scaffold_53 . CDS 83668 83919 . - 0 ID=Phyra80825;Parent=Phyra80825;rank=2 scaffold_53 . CDS 84115 84492 . - 0 ID=Phyra80825;Parent=Phyra80825;rank=1 scaffold_53 . biological_region 84917 84919 0.999 + . logic_name=eponine scaffold_53 . repeat_region 89038 89345 . + . description=GypsyPi-1c_LTR scaffold_53 . exon 83513 83592 . - . ID=Phyra80825.3;Parent=Phyra80825;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_53 . exon 83668 83919 . - . ID=Phyra80825.2;Parent=Phyra80825;constitutive=1;rank=2 scaffold_53 . exon 84115 84492 . - . ID=Phyra80825.1;Parent=Phyra80825;constitutive=1;rank=1 scaffold_53 . repeat_region 89346 89719 . + . description=GypsyPi-1c_I-int scaffold_53 . repeat_region 89720 93760 . ? . description=dust scaffold_53 . repeat_region 93761 95231 . + . description=GypsyPi-1c_I-int scaffold_53 . repeat_region 95314 97566 . ? . description=dust scaffold_53 . repeat_region 97878 97886 . ? . description=dust scaffold_53 . repeat_region 98917 99236 . ? . description=dust scaffold_53 ensembl protein_coding_gene 93927 95040 . - . ID=Phyra80826;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000019;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 93927 95040 . - . ID=Phyra80826;Parent=Phyra80826;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 93927 93993 . - 0 ID=Phyra80826;Parent=Phyra80826;rank=2 scaffold_53 . exon 93927 93993 . - . ID=Phyra80826.2;Parent=Phyra80826;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 . CDS 94019 95040 . - 0 ID=Phyra80826;Parent=Phyra80826;rank=1 scaffold_53 . exon 94019 95040 . - . ID=Phyra80826.1;Parent=Phyra80826;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 . biological_region 100638 100639 0.999 + . logic_name=eponine scaffold_53 . biological_region 102277 102279 0.999 - . logic_name=eponine scaffold_53 . repeat_region 109270 109298 . ? . description=trf scaffold_53 ensembl protein_coding_gene 116006 116515 . - . ID=Phyra71836;biotype=protein_coding;description=Elicitin-like protein RAL3 [Source:UniProtKB/TrEMBL%3BAcc:Q2N0B6];external_name=fgenesh1_pm.C_scaffold_53000003;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 116006 116515 . - . ID=Phyra71836;Parent=Phyra71836;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 116006 116515 . - 0 ID=Phyra71836;Parent=Phyra71836;rank=1 scaffold_53 . exon 116006 116515 . - . ID=Phyra71836.1;Parent=Phyra71836;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 117082 117834 . - . ID=Phyra80828;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000021;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 117082 117834 . - . ID=Phyra80828;Parent=Phyra80828;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 117082 117834 . - 0 ID=Phyra80828;Parent=Phyra80828;rank=1 scaffold_53 . exon 117082 117834 . - . ID=Phyra80828.1;Parent=Phyra80828;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 118734 119558 . + . ID=Phyra80829;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000022;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 118734 119558 . + . ID=Phyra80829;Parent=Phyra80829;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 118734 119558 . + 0 ID=Phyra80829;Parent=Phyra80829;rank=1 scaffold_53 . exon 118734 119558 . + . ID=Phyra80829.1;Parent=Phyra80829;constitutive=1;rank=1 scaffold_53 . repeat_region 122299 123129 . ? . description=dust scaffold_53 . biological_region 126870 126874 0.999 + . logic_name=eponine scaffold_53 . biological_region 127699 127703 0.999 + . logic_name=eponine scaffold_53 . biological_region 128272 128279 0.999 + . logic_name=eponine scaffold_53 ensembl protein_coding_gene 126692 127909 . + . ID=Phyra80832;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000025;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 126692 127909 . + . ID=Phyra80832;Parent=Phyra80832;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 126692 127909 . + 0 ID=Phyra80832;Parent=Phyra80832;rank=1 scaffold_53 . exon 126692 127909 . + . ID=Phyra80832.1;Parent=Phyra80832;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 128188 129033 . + . ID=Phyra80833;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000026;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 128188 129033 . + . ID=Phyra80833;Parent=Phyra80833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 128188 129033 . + 0 ID=Phyra80833;Parent=Phyra80833;rank=1 scaffold_53 . exon 128188 129033 . + . ID=Phyra80833.1;Parent=Phyra80833;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 119868 122150 . + . ID=Phyra95832;biotype=protein_coding;external_name=C_scaffold_53000007;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 119868 122150 . + . ID=Phyra95832;Parent=Phyra95832;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 119868 119996 . + 0 ID=Phyra95832;Parent=Phyra95832;rank=1 scaffold_53 . exon 119868 119996 . + . ID=Phyra95832.1;Parent=Phyra95832;constitutive=1;rank=1 scaffold_53 . CDS 120054 120302 . + 0 ID=Phyra95832;Parent=Phyra95832;rank=2 scaffold_53 . exon 120054 120302 . + . ID=Phyra95832.2;Parent=Phyra95832;constitutive=1;rank=2 scaffold_53 . CDS 120500 120635 . + 0 ID=Phyra95832;Parent=Phyra95832;rank=3 scaffold_53 . exon 120500 120635 . + . ID=Phyra95832.3;Parent=Phyra95832;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_53 . CDS 120713 120818 . + 0 ID=Phyra95832;Parent=Phyra95832;rank=4 scaffold_53 . exon 120713 120818 . + . ID=Phyra95832.4;Parent=Phyra95832;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_53 . CDS 120966 121182 . + 0 ID=Phyra95832;Parent=Phyra95832;rank=5 scaffold_53 . exon 120966 121182 . + . ID=Phyra95832.5;Parent=Phyra95832;constitutive=1;ensembl_phase=2;rank=5 scaffold_53 . CDS 121288 121413 . + 0 ID=Phyra95832;Parent=Phyra95832;rank=6 scaffold_53 . exon 121288 121413 . + . ID=Phyra95832.6;Parent=Phyra95832;constitutive=1;rank=6 scaffold_53 . CDS 121484 121522 . + 0 ID=Phyra95832;Parent=Phyra95832;rank=7 scaffold_53 . exon 121484 121522 . + . ID=Phyra95832.7;Parent=Phyra95832;constitutive=1;rank=7 scaffold_53 . CDS 121886 122050 . + 0 ID=Phyra95832;Parent=Phyra95832;rank=8 scaffold_53 . exon 121886 122050 . + . ID=Phyra95832.8;Parent=Phyra95832;constitutive=1;rank=8 scaffold_53 . CDS 122103 122150 . + 0 ID=Phyra95832;Parent=Phyra95832;rank=9 scaffold_53 . exon 122103 122150 . + . ID=Phyra95832.9;Parent=Phyra95832;constitutive=1;rank=9 scaffold_53 ensembl protein_coding_gene 125133 126342 . + . ID=Phyra95833;biotype=protein_coding;external_name=C_scaffold_53000008;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 125133 126342 . + . ID=Phyra95833;Parent=Phyra95833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 125133 125380 . + 0 ID=Phyra95833;Parent=Phyra95833;rank=1 scaffold_53 . exon 125133 125380 . + . ID=Phyra95833.1;Parent=Phyra95833;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 . CDS 125453 125874 . + 0 ID=Phyra95833;Parent=Phyra95833;rank=2 scaffold_53 . exon 125453 125874 . + . ID=Phyra95833.2;Parent=Phyra95833;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_53 . CDS 125943 126046 . + 0 ID=Phyra95833;Parent=Phyra95833;rank=3 scaffold_53 . exon 125943 126046 . + . ID=Phyra95833.3;Parent=Phyra95833;constitutive=1;ensembl_phase=1;rank=3 scaffold_53 . CDS 126112 126342 . + 0 ID=Phyra95833;Parent=Phyra95833;rank=4 scaffold_53 . exon 126112 126342 . + . ID=Phyra95833.4;Parent=Phyra95833;constitutive=1;rank=4 scaffold_53 . repeat_region 130744 130770 . ? . description=trf scaffold_53 . repeat_region 130744 130797 . + . description=(TCG)n scaffold_53 . repeat_region 131249 131323 . ? . description=trf scaffold_53 ensembl protein_coding_gene 129296 131350 . + . ID=Phyra80834;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000027;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 129296 131350 . + . ID=Phyra80834;Parent=Phyra80834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 129296 131350 . + 0 ID=Phyra80834;Parent=Phyra80834;rank=1 scaffold_53 . exon 129296 131350 . + . ID=Phyra80834.1;Parent=Phyra80834;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 133219 134470 . + . ID=Phyra80835;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000028;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 133219 134470 . + . ID=Phyra80835;Parent=Phyra80835;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 133219 134410 . + 0 ID=Phyra80835;Parent=Phyra80835;rank=1 scaffold_53 . exon 133219 134410 . + . ID=Phyra80835.1;Parent=Phyra80835;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 . CDS 134448 134470 . + 0 ID=Phyra80835;Parent=Phyra80835;rank=2 scaffold_53 . exon 134448 134470 . + . ID=Phyra80835.2;Parent=Phyra80835;constitutive=1;ensembl_phase=1;rank=2 scaffold_53 ensembl protein_coding_gene 136926 138768 . - . ID=Phyra80836;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000029;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 136926 138768 . - . ID=Phyra80836;Parent=Phyra80836;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 136926 137019 . - 0 ID=Phyra80836;Parent=Phyra80836;rank=5 scaffold_53 . exon 136926 137019 . - . ID=Phyra80836.5;Parent=Phyra80836;constitutive=1;ensembl_phase=2;rank=5 scaffold_53 . CDS 137084 137158 . - 0 ID=Phyra80836;Parent=Phyra80836;rank=4 scaffold_53 . exon 137084 137158 . - . ID=Phyra80836.4;Parent=Phyra80836;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_53 . CDS 137233 137860 . - 0 ID=Phyra80836;Parent=Phyra80836;rank=3 scaffold_53 . exon 137233 137860 . - . ID=Phyra80836.3;Parent=Phyra80836;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_53 . CDS 137996 138417 . - 0 ID=Phyra80836;Parent=Phyra80836;rank=2 scaffold_53 . exon 137996 138417 . - . ID=Phyra80836.2;Parent=Phyra80836;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_53 . CDS 138533 138768 . - 0 ID=Phyra80836;Parent=Phyra80836;rank=1 scaffold_53 . exon 138533 138768 . - . ID=Phyra80836.1;Parent=Phyra80836;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 . repeat_region 141815 141835 . ? . description=dust scaffold_53 . repeat_region 142245 142657 . ? . description=dust scaffold_53 . biological_region 144018 144021 0.999 + . logic_name=eponine scaffold_53 . repeat_region 145096 145194 . + . description=GypsyPi-1c_I-int scaffold_53 . biological_region 145583 145586 0.999 + . logic_name=eponine scaffold_53 . biological_region 145685 145689 0.999 + . logic_name=eponine scaffold_53 . repeat_region 146208 147530 . + . description=GypsyPi-1c_I-int scaffold_53 . repeat_region 147901 148085 . ? . description=dust scaffold_53 . biological_region 148368 148370 0.999 + . logic_name=eponine scaffold_53 . biological_region 148458 148464 0.999 + . logic_name=eponine scaffold_53 . biological_region 148553 148557 0.999 + . logic_name=eponine scaffold_53 ensembl protein_coding_gene 145575 147311 . + . ID=Phyra80837;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000030;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 145575 147311 . + . ID=Phyra80837;Parent=Phyra80837;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 145575 147311 . + 0 ID=Phyra80837;Parent=Phyra80837;rank=1 scaffold_53 . exon 145575 147311 . + . ID=Phyra80837.1;Parent=Phyra80837;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 147526 149030 . - . ID=Phyra80838;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000031;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 147526 149030 . - . ID=Phyra80838;Parent=Phyra80838;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 147526 147668 . - 0 ID=Phyra80838;Parent=Phyra80838;rank=2 scaffold_53 . exon 147526 147668 . - . ID=Phyra80838.2;Parent=Phyra80838;constitutive=1;ensembl_phase=1;rank=2 scaffold_53 . CDS 148151 149030 . - 0 ID=Phyra80838;Parent=Phyra80838;rank=1 scaffold_53 . exon 148151 149030 . - . ID=Phyra80838.1;Parent=Phyra80838;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 . repeat_region 158769 158818 . ? . description=dust scaffold_53 . repeat_region 160337 161432 . ? . description=dust scaffold_53 . repeat_region 162953 162972 . ? . description=dust scaffold_53 . repeat_region 163119 167181 . ? . description=dust scaffold_53 . repeat_region 167985 168015 . ? . description=trf scaffold_53 . repeat_region 168125 168352 . + . description=Polinton-1_PI scaffold_53 . repeat_region 168524 168554 . + . description=Polinton-1_PI scaffold_53 ensembl protein_coding_gene 168191 172407 . + . ID=Phyra50500;biotype=protein_coding;external_name=gwEuk.53.51.1;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 168191 172407 . + . ID=Phyra50500;Parent=Phyra50500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 168191 168610 . + 0 ID=Phyra50500;Parent=Phyra50500;rank=1 scaffold_53 . exon 168191 168610 . + . ID=Phyra50500.1;Parent=Phyra50500;constitutive=1;rank=1 scaffold_53 . CDS 171526 172407 . + 0 ID=Phyra50500;Parent=Phyra50500;rank=2 scaffold_53 . exon 171526 172407 . + . ID=Phyra50500.2;Parent=Phyra50500;constitutive=1;rank=2 scaffold_53 ensembl protein_coding_gene 177008 178248 . + . ID=Phyra80840;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000033;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 177008 178248 . + . ID=Phyra80840;Parent=Phyra80840;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 177008 178184 . + 0 ID=Phyra80840;Parent=Phyra80840;rank=1 scaffold_53 . exon 177008 178184 . + . ID=Phyra80840.1;Parent=Phyra80840;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 . CDS 178235 178248 . + 0 ID=Phyra80840;Parent=Phyra80840;rank=2 scaffold_53 . exon 178235 178248 . + . ID=Phyra80840.2;Parent=Phyra80840;constitutive=1;ensembl_phase=1;rank=2 scaffold_53 . repeat_region 179633 179965 . ? . description=dust scaffold_53 . repeat_region 181703 183545 . ? . description=dust scaffold_53 . repeat_region 186920 186932 . ? . description=dust scaffold_53 . repeat_region 187284 187291 . ? . description=dust scaffold_53 . repeat_region 187595 187603 . ? . description=dust scaffold_53 . biological_region 191895 191899 0.999 + . logic_name=eponine scaffold_53 . biological_region 191946 191951 0.999 + . logic_name=eponine scaffold_53 . biological_region 191975 191975 0.999 - . logic_name=eponine scaffold_53 . biological_region 192012 192013 0.999 - . logic_name=eponine scaffold_53 . biological_region 192049 192053 0.999 + . logic_name=eponine scaffold_53 . biological_region 194970 194975 0.999 + . logic_name=eponine scaffold_53 . biological_region 195021 195026 0.999 + . logic_name=eponine scaffold_53 . biological_region 195050 195050 0.999 - . logic_name=eponine scaffold_53 . biological_region 195087 195088 0.999 - . logic_name=eponine scaffold_53 . biological_region 195124 195128 0.999 + . logic_name=eponine scaffold_53 ensembl protein_coding_gene 190685 196709 . + . ID=Phyra80841;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000034;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 190685 196709 . + . ID=Phyra80841;Parent=Phyra80841;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 190685 191248 . + 0 ID=Phyra80841;Parent=Phyra80841;rank=1 scaffold_53 . exon 190685 191248 . + . ID=Phyra80841.1;Parent=Phyra80841;constitutive=1;rank=1 scaffold_53 . CDS 191450 192952 . + 0 ID=Phyra80841;Parent=Phyra80841;rank=2 scaffold_53 . exon 191450 192952 . + . ID=Phyra80841.2;Parent=Phyra80841;constitutive=1;rank=2 scaffold_53 . CDS 193001 193264 . + 0 ID=Phyra80841;Parent=Phyra80841;rank=3 scaffold_53 . exon 193001 193264 . + . ID=Phyra80841.3;Parent=Phyra80841;constitutive=1;rank=3 scaffold_53 . CDS 193328 193539 . + 0 ID=Phyra80841;Parent=Phyra80841;rank=4 scaffold_53 . exon 193328 193539 . + . ID=Phyra80841.4;Parent=Phyra80841;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_53 . CDS 193625 194057 . + 0 ID=Phyra80841;Parent=Phyra80841;rank=5 scaffold_53 . exon 193625 194057 . + . ID=Phyra80841.5;Parent=Phyra80841;constitutive=1;ensembl_phase=2;rank=5 scaffold_53 . CDS 194252 194323 . + 0 ID=Phyra80841;Parent=Phyra80841;rank=6 scaffold_53 . exon 194252 194323 . + . ID=Phyra80841.6;Parent=Phyra80841;constitutive=1;rank=6 scaffold_53 . CDS 194399 195385 . + 0 ID=Phyra80841;Parent=Phyra80841;rank=7 scaffold_53 . exon 194399 195385 . + . ID=Phyra80841.7;Parent=Phyra80841;constitutive=1;rank=7 scaffold_53 . CDS 195440 196612 . + 0 ID=Phyra80841;Parent=Phyra80841;rank=8 scaffold_53 . exon 195440 196612 . + . ID=Phyra80841.8;Parent=Phyra80841;constitutive=1;rank=8 scaffold_53 . CDS 196671 196709 . + 0 ID=Phyra80841;Parent=Phyra80841;rank=9 scaffold_53 . exon 196671 196709 . + . ID=Phyra80841.9;Parent=Phyra80841;constitutive=1;rank=9 scaffold_53 . repeat_region 198696 199465 . ? . description=dust scaffold_53 . repeat_region 202078 202103 . ? . description=dust scaffold_53 . repeat_region 202876 203055 . ? . description=dust scaffold_53 ensembl protein_coding_gene 202691 203462 . - . ID=Phyra80842;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000035;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 202691 203462 . - . ID=Phyra80842;Parent=Phyra80842;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 202691 202870 . - 0 ID=Phyra80842;Parent=Phyra80842;rank=2 scaffold_53 . exon 202691 202870 . - . ID=Phyra80842.2;Parent=Phyra80842;constitutive=1;rank=2 scaffold_53 . CDS 203256 203462 . - 0 ID=Phyra80842;Parent=Phyra80842;rank=1 scaffold_53 . exon 203256 203462 . - . ID=Phyra80842.1;Parent=Phyra80842;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 203884 211240 . - . ID=Phyra80843;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000036;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 203884 211240 . - . ID=Phyra80843;Parent=Phyra80843;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 203884 205965 . - 0 ID=Phyra80843;Parent=Phyra80843;rank=2 scaffold_53 . exon 203884 205965 . - . ID=Phyra80843.2;Parent=Phyra80843;constitutive=1;rank=2 scaffold_53 . CDS 206120 211240 . - 0 ID=Phyra80843;Parent=Phyra80843;rank=1 scaffold_53 . exon 206120 211240 . - . ID=Phyra80843.1;Parent=Phyra80843;constitutive=1;rank=1 scaffold_53 . biological_region 210938 210941 0.999 + . logic_name=eponine scaffold_53 . biological_region 211161 211167 0.999 + . logic_name=eponine scaffold_53 . biological_region 214430 214431 0.999 + . logic_name=eponine scaffold_53 . biological_region 214883 214889 0.999 + . logic_name=eponine scaffold_53 . repeat_region 215060 215101 . ? . description=trf scaffold_53 . repeat_region 216288 216321 . ? . description=trf scaffold_53 . biological_region 216997 216997 0.999 - . logic_name=eponine scaffold_53 ensembl protein_coding_gene 212191 213867 . - . ID=Phyra80844;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000037;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 212191 213867 . - . ID=Phyra80844;Parent=Phyra80844;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 212191 213867 . - 0 ID=Phyra80844;Parent=Phyra80844;rank=1 scaffold_53 . exon 212191 213867 . - . ID=Phyra80844.1;Parent=Phyra80844;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 216345 222386 . - . ID=Phyra80845;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000038;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 216345 222386 . - . ID=Phyra80845;Parent=Phyra80845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 216345 220831 . - 0 ID=Phyra80845;Parent=Phyra80845;rank=2 scaffold_53 . exon 216345 220831 . - . ID=Phyra80845.2;Parent=Phyra80845;constitutive=1;ensembl_phase=1;rank=2 scaffold_53 . CDS 221132 222386 . - 0 ID=Phyra80845;Parent=Phyra80845;rank=1 scaffold_53 . exon 221132 222386 . - . ID=Phyra80845.1;Parent=Phyra80845;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 ensembl protein_coding_gene 224045 225656 . + . ID=Phyra80846;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000039;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 224045 225656 . + . ID=Phyra80846;Parent=Phyra80846;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 224045 224279 . + 0 ID=Phyra80846;Parent=Phyra80846;rank=1 scaffold_53 . exon 224045 224279 . + . ID=Phyra80846.1;Parent=Phyra80846;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 . CDS 224340 224588 . + 0 ID=Phyra80846;Parent=Phyra80846;rank=2 scaffold_53 . exon 224340 224588 . + . ID=Phyra80846.2;Parent=Phyra80846;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_53 . CDS 224657 224810 . + 0 ID=Phyra80846;Parent=Phyra80846;rank=3 scaffold_53 . exon 224657 224810 . + . ID=Phyra80846.3;Parent=Phyra80846;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_53 . CDS 224893 224960 . + 0 ID=Phyra80846;Parent=Phyra80846;rank=4 scaffold_53 . exon 224893 224960 . + . ID=Phyra80846.4;Parent=Phyra80846;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_53 . CDS 225140 225518 . + 0 ID=Phyra80846;Parent=Phyra80846;rank=5 scaffold_53 . exon 225140 225518 . + . ID=Phyra80846.5;Parent=Phyra80846;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_53 . CDS 225641 225656 . + 0 ID=Phyra80846;Parent=Phyra80846;rank=6 scaffold_53 . exon 225641 225656 . + . ID=Phyra80846.6;Parent=Phyra80846;constitutive=1;ensembl_phase=2;rank=6 scaffold_53 ensembl protein_coding_gene 225855 227381 . - . ID=Phyra80847;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000040;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 225855 227381 . - . ID=Phyra80847;Parent=Phyra80847;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 225855 225899 . - 0 ID=Phyra80847;Parent=Phyra80847;rank=3 scaffold_53 . exon 225855 225899 . - . ID=Phyra80847.3;Parent=Phyra80847;constitutive=1;rank=3 scaffold_53 . CDS 225958 227209 . - 0 ID=Phyra80847;Parent=Phyra80847;rank=2 scaffold_53 . exon 225958 227209 . - . ID=Phyra80847.2;Parent=Phyra80847;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 . CDS 227278 227381 . - 0 ID=Phyra80847;Parent=Phyra80847;rank=1 scaffold_53 . exon 227278 227381 . - . ID=Phyra80847.1;Parent=Phyra80847;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 ensembl protein_coding_gene 227731 228531 . + . ID=Phyra80848;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000041;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 227731 228531 . + . ID=Phyra80848;Parent=Phyra80848;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 227731 228531 . + 0 ID=Phyra80848;Parent=Phyra80848;rank=1 scaffold_53 . exon 227731 228531 . + . ID=Phyra80848.1;Parent=Phyra80848;constitutive=1;rank=1 scaffold_53 . repeat_region 228256 228302 . ? . description=dust scaffold_53 . repeat_region 233034 233043 . ? . description=dust scaffold_53 ensembl protein_coding_gene 231166 232051 . + . ID=Phyra80850;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000043;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 231166 232051 . + . ID=Phyra80850;Parent=Phyra80850;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 231166 231323 . + 0 ID=Phyra80850;Parent=Phyra80850;rank=1 scaffold_53 . exon 231166 231323 . + . ID=Phyra80850.1;Parent=Phyra80850;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 . CDS 231387 231603 . + 0 ID=Phyra80850;Parent=Phyra80850;rank=2 scaffold_53 . exon 231387 231603 . + . ID=Phyra80850.2;Parent=Phyra80850;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 . CDS 231776 232051 . + 0 ID=Phyra80850;Parent=Phyra80850;rank=3 scaffold_53 . exon 231776 232051 . + . ID=Phyra80850.3;Parent=Phyra80850;constitutive=1;rank=3 scaffold_53 ensembl protein_coding_gene 228807 230161 . - . ID=Phyra95841;biotype=protein_coding;external_name=C_scaffold_53000016;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 228807 230161 . - . ID=Phyra95841;Parent=Phyra95841;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 228807 228833 . - 0 ID=Phyra95841;Parent=Phyra95841;rank=2 scaffold_53 . exon 228807 228833 . - . ID=Phyra95841.2;Parent=Phyra95841;constitutive=1;rank=2 scaffold_53 . CDS 229022 230161 . - 0 ID=Phyra95841;Parent=Phyra95841;rank=1 scaffold_53 . exon 229022 230161 . - . ID=Phyra95841.1;Parent=Phyra95841;constitutive=1;rank=1 scaffold_53 . repeat_region 241247 241266 . ? . description=trf scaffold_53 . biological_region 243034 243039 0.999 - . logic_name=eponine scaffold_53 . biological_region 243899 243904 0.999 - . logic_name=eponine scaffold_53 . biological_region 243912 243918 0.999 + . logic_name=eponine scaffold_53 . biological_region 243930 243933 0.999 - . logic_name=eponine scaffold_53 ensembl protein_coding_gene 238098 240989 . + . ID=Phyra80851;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000044;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 238098 240989 . + . ID=Phyra80851;Parent=Phyra80851;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 238098 240989 . + 0 ID=Phyra80851;Parent=Phyra80851;rank=1 scaffold_53 . exon 238098 240989 . + . ID=Phyra80851.1;Parent=Phyra80851;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 241124 242528 . - . ID=Phyra80852;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000045;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 241124 242528 . - . ID=Phyra80852;Parent=Phyra80852;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 241124 241131 . - 0 ID=Phyra80852;Parent=Phyra80852;rank=4 scaffold_53 . exon 241124 241131 . - . ID=Phyra80852.4;Parent=Phyra80852;constitutive=1;ensembl_phase=1;rank=4 scaffold_53 . CDS 241437 241945 . - 0 ID=Phyra80852;Parent=Phyra80852;rank=3 scaffold_53 . exon 241437 241945 . - . ID=Phyra80852.3;Parent=Phyra80852;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_53 . CDS 241992 242125 . - 0 ID=Phyra80852;Parent=Phyra80852;rank=2 scaffold_53 . exon 241992 242125 . - . ID=Phyra80852.2;Parent=Phyra80852;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_53 . CDS 242193 242528 . - 0 ID=Phyra80852;Parent=Phyra80852;rank=1 scaffold_53 . exon 242193 242528 . - . ID=Phyra80852.1;Parent=Phyra80852;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 243692 245705 . + . ID=Phyra80853;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000046;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 243692 245705 . + . ID=Phyra80853;Parent=Phyra80853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 243692 244874 . + 0 ID=Phyra80853;Parent=Phyra80853;rank=1 scaffold_53 . exon 243692 244874 . + . ID=Phyra80853.1;Parent=Phyra80853;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 . CDS 244945 245705 . + 0 ID=Phyra80853;Parent=Phyra80853;rank=2 scaffold_53 . exon 244945 245705 . + . ID=Phyra80853.2;Parent=Phyra80853;constitutive=1;ensembl_phase=1;rank=2 scaffold_53 ensembl protein_coding_gene 249555 250199 . - . ID=Phyra50462;biotype=protein_coding;external_name=gwEuk.53.13.1;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 249555 250199 . - . ID=Phyra50462;Parent=Phyra50462;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 249555 249639 . - 0 ID=Phyra50462;Parent=Phyra50462;rank=4 scaffold_53 . exon 249555 249639 . - . ID=Phyra50462.4;Parent=Phyra50462;constitutive=1;ensembl_phase=2;rank=4 scaffold_53 . CDS 249708 249810 . - 0 ID=Phyra50462;Parent=Phyra50462;rank=3 scaffold_53 . exon 249708 249810 . - . ID=Phyra50462.3;Parent=Phyra50462;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_53 . CDS 249880 249980 . - 0 ID=Phyra50462;Parent=Phyra50462;rank=2 scaffold_53 . exon 249880 249980 . - . ID=Phyra50462.2;Parent=Phyra50462;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_53 . CDS 250045 250199 . - 0 ID=Phyra50462;Parent=Phyra50462;rank=1 scaffold_53 . exon 250045 250199 . - . ID=Phyra50462.1;Parent=Phyra50462;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 ensembl protein_coding_gene 250605 254303 . + . ID=Phyra80855;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000048;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 250605 254303 . + . ID=Phyra80855;Parent=Phyra80855;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 250605 254303 . + 0 ID=Phyra80855;Parent=Phyra80855;rank=1 scaffold_53 . exon 250605 254303 . + . ID=Phyra80855.1;Parent=Phyra80855;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 254783 256216 . - . ID=Phyra80856;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000049;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 254783 256216 . - . ID=Phyra80856;Parent=Phyra80856;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 254783 256216 . - 0 ID=Phyra80856;Parent=Phyra80856;rank=1 scaffold_53 . exon 254783 256216 . - . ID=Phyra80856.1;Parent=Phyra80856;constitutive=1;rank=1 scaffold_53 . repeat_region 262294 262308 . ? . description=dust scaffold_53 . repeat_region 263266 263273 . ? . description=dust scaffold_53 . repeat_region 264917 264931 . ? . description=dust scaffold_53 . repeat_region 265579 266615 . ? . description=dust scaffold_53 . repeat_region 267564 267573 . ? . description=dust scaffold_53 ensembl protein_coding_gene 259377 260810 . + . ID=Phyra80857;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000050;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 259377 260810 . + . ID=Phyra80857;Parent=Phyra80857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 259377 260810 . + 0 ID=Phyra80857;Parent=Phyra80857;rank=1 scaffold_53 . exon 259377 260810 . + . ID=Phyra80857.1;Parent=Phyra80857;constitutive=1;rank=1 scaffold_53 . repeat_region 268388 268429 . ? . description=trf scaffold_53 . repeat_region 268577 268645 . ? . description=trf scaffold_53 . biological_region 269238 269239 0.999 + . logic_name=eponine scaffold_53 ensembl protein_coding_gene 276233 276607 . + . ID=Phyra80858;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000051;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 276233 276607 . + . ID=Phyra80858;Parent=Phyra80858;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 276233 276607 . + 0 ID=Phyra80858;Parent=Phyra80858;rank=1 scaffold_53 . exon 276233 276607 . + . ID=Phyra80858.1;Parent=Phyra80858;constitutive=1;rank=1 scaffold_53 . repeat_region 278103 278118 . ? . description=dust scaffold_53 . repeat_region 278826 278859 . ? . description=dust scaffold_53 . repeat_region 279142 279182 . ? . description=dust scaffold_53 . repeat_region 279911 279922 . ? . description=dust scaffold_53 . repeat_region 283050 283057 . ? . description=dust scaffold_53 . repeat_region 285496 285525 . ? . description=dust scaffold_53 . repeat_region 285558 285570 . ? . description=dust scaffold_53 . repeat_region 287447 287459 . ? . description=dust scaffold_53 ensembl protein_coding_gene 280230 280715 . - . ID=Phyra80859;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000052;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 280230 280715 . - . ID=Phyra80859;Parent=Phyra80859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 280230 280715 . - 0 ID=Phyra80859;Parent=Phyra80859;rank=1 scaffold_53 . exon 280230 280715 . - . ID=Phyra80859.1;Parent=Phyra80859;constitutive=1;rank=1 scaffold_53 . repeat_region 296440 296470 . ? . description=trf scaffold_53 . biological_region 296573 296575 0.999 + . logic_name=eponine scaffold_53 ensembl protein_coding_gene 289445 291019 . + . ID=Phyra80860;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000053;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 289445 291019 . + . ID=Phyra80860;Parent=Phyra80860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 289445 291019 . + 0 ID=Phyra80860;Parent=Phyra80860;rank=1 scaffold_53 . exon 289445 291019 . + . ID=Phyra80860.1;Parent=Phyra80860;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 295122 296267 . + . ID=Phyra80861;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000054;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 295122 296267 . + . ID=Phyra80861;Parent=Phyra80861;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 295122 296267 . + 0 ID=Phyra80861;Parent=Phyra80861;rank=1 scaffold_53 . exon 295122 296267 . + . ID=Phyra80861.1;Parent=Phyra80861;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 298361 300440 . + . ID=Phyra50465;biotype=protein_coding;external_name=gwEuk.53.16.1;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 298361 300440 . + . ID=Phyra50465;Parent=Phyra50465;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 298361 298486 . + 0 ID=Phyra50465;Parent=Phyra50465;rank=1 scaffold_53 . exon 298361 298486 . + . ID=Phyra50465.1;Parent=Phyra50465;constitutive=1;rank=1 scaffold_53 . CDS 298561 299777 . + 0 ID=Phyra50465;Parent=Phyra50465;rank=2 scaffold_53 . exon 298561 299777 . + . ID=Phyra50465.2;Parent=Phyra50465;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_53 . CDS 299856 300137 . + 0 ID=Phyra50465;Parent=Phyra50465;rank=3 scaffold_53 . exon 299856 300137 . + . ID=Phyra50465.3;Parent=Phyra50465;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_53 . CDS 300215 300440 . + 0 ID=Phyra50465;Parent=Phyra50465;rank=4 scaffold_53 . exon 300215 300440 . + . ID=Phyra50465.4;Parent=Phyra50465;constitutive=1;ensembl_phase=2;rank=4 scaffold_53 ensembl protein_coding_gene 301299 311207 . + . ID=Phyra80864;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000057;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 301299 311207 . + . ID=Phyra80864;Parent=Phyra80864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 301299 311207 . + 0 ID=Phyra80864;Parent=Phyra80864;rank=1 scaffold_53 . exon 301299 311207 . + . ID=Phyra80864.1;Parent=Phyra80864;constitutive=1;rank=1 scaffold_53 . biological_region 310488 310489 0.999 + . logic_name=eponine scaffold_53 . biological_region 311104 311107 0.999 + . logic_name=eponine scaffold_53 . biological_region 314301 314306 0.999 + . logic_name=eponine scaffold_53 . biological_region 315553 315555 0.999 + . logic_name=eponine scaffold_53 . biological_region 315600 315600 0.999 - . logic_name=eponine scaffold_53 . biological_region 315633 315634 0.999 + . logic_name=eponine scaffold_53 . repeat_region 316767 316775 . ? . description=dust scaffold_53 . repeat_region 317034 317078 . ? . description=trf scaffold_53 ensembl protein_coding_gene 311343 316968 . - . ID=Phyra95843;biotype=protein_coding;external_name=C_scaffold_53000018;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 311343 316968 . - . ID=Phyra95843;Parent=Phyra95843;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 311343 311356 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=18 scaffold_53 . exon 311343 311356 . - . ID=Phyra95843.18;Parent=Phyra95843;constitutive=1;ensembl_phase=1;rank=18 scaffold_53 . CDS 311437 311926 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=17 scaffold_53 . exon 311437 311926 . - . ID=Phyra95843.17;Parent=Phyra95843;constitutive=1;ensembl_end_phase=1;rank=17 scaffold_53 . CDS 311981 312109 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=16 scaffold_53 . exon 311981 312109 . - . ID=Phyra95843.16;Parent=Phyra95843;constitutive=1;rank=16 scaffold_53 . CDS 312180 312324 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=15 scaffold_53 . exon 312180 312324 . - . ID=Phyra95843.15;Parent=Phyra95843;constitutive=1;ensembl_phase=2;rank=15 scaffold_53 . CDS 312731 313011 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=14 scaffold_53 . exon 312731 313011 . - . ID=Phyra95843.14;Parent=Phyra95843;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_53 . CDS 313098 313313 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=13 scaffold_53 . exon 313098 313313 . - . ID=Phyra95843.13;Parent=Phyra95843;constitutive=1;rank=13 scaffold_53 . CDS 313385 313642 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=12 scaffold_53 . exon 313385 313642 . - . ID=Phyra95843.12;Parent=Phyra95843;constitutive=1;rank=12 scaffold_53 . CDS 313710 313892 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=11 scaffold_53 . exon 313710 313892 . - . ID=Phyra95843.11;Parent=Phyra95843;constitutive=1;rank=11 scaffold_53 . CDS 313931 314102 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=10 scaffold_53 . exon 313931 314102 . - . ID=Phyra95843.10;Parent=Phyra95843;constitutive=1;ensembl_phase=2;rank=10 scaffold_53 . CDS 314172 314353 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=9 scaffold_53 . exon 314172 314353 . - . ID=Phyra95843.9;Parent=Phyra95843;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_53 . CDS 314492 314830 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=8 scaffold_53 . exon 314492 314830 . - . ID=Phyra95843.8;Parent=Phyra95843;constitutive=1;rank=8 scaffold_53 . CDS 314916 315125 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=7 scaffold_53 . exon 314916 315125 . - . ID=Phyra95843.7;Parent=Phyra95843;constitutive=1;rank=7 scaffold_53 . CDS 315199 315259 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=6 scaffold_53 . exon 315199 315259 . - . ID=Phyra95843.6;Parent=Phyra95843;constitutive=1;ensembl_phase=2;rank=6 scaffold_53 . CDS 315518 315940 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=5 scaffold_53 . exon 315518 315940 . - . ID=Phyra95843.5;Parent=Phyra95843;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_53 . CDS 315977 316018 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=4 scaffold_53 . exon 315977 316018 . - . ID=Phyra95843.4;Parent=Phyra95843;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_53 . CDS 316091 316254 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=3 scaffold_53 . exon 316091 316254 . - . ID=Phyra95843.3;Parent=Phyra95843;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_53 . CDS 316279 316693 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=2 scaffold_53 . exon 316279 316693 . - . ID=Phyra95843.2;Parent=Phyra95843;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 . CDS 316784 316968 . - 0 ID=Phyra95843;Parent=Phyra95843;rank=1 scaffold_53 . exon 316784 316968 . - . ID=Phyra95843.1;Parent=Phyra95843;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 ensembl protein_coding_gene 326879 327947 . - . ID=Phyra50480;biotype=protein_coding;external_name=gwEuk.53.31.1;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 326879 327947 . - . ID=Phyra50480;Parent=Phyra50480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 326879 327285 . - 0 ID=Phyra50480;Parent=Phyra50480;rank=2 scaffold_53 . exon 326879 327285 . - . ID=Phyra50480.2;Parent=Phyra50480;constitutive=1;ensembl_phase=1;rank=2 scaffold_53 . CDS 327353 327947 . - 0 ID=Phyra50480;Parent=Phyra50480;rank=1 scaffold_53 ensembl protein_coding_gene 317965 320379 . + . ID=Phyra80868;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000061;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 317965 320379 . + . ID=Phyra80868;Parent=Phyra80868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 317965 320379 . + 0 ID=Phyra80868;Parent=Phyra80868;rank=1 scaffold_53 . exon 317965 320379 . + . ID=Phyra80868.1;Parent=Phyra80868;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 320616 322973 . - . ID=Phyra80869;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000062;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 320616 322973 . - . ID=Phyra80869;Parent=Phyra80869;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 320616 322790 . - 0 ID=Phyra80869;Parent=Phyra80869;rank=2 scaffold_53 . exon 320616 322790 . - . ID=Phyra80869.2;Parent=Phyra80869;constitutive=1;rank=2 scaffold_53 . CDS 322929 322973 . - 0 ID=Phyra80869;Parent=Phyra80869;rank=1 scaffold_53 . exon 322929 322973 . - . ID=Phyra80869.1;Parent=Phyra80869;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 324520 326745 . + . ID=Phyra80870;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000063;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 324520 326745 . + . ID=Phyra80870;Parent=Phyra80870;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 324520 324682 . + 0 ID=Phyra80870;Parent=Phyra80870;rank=1 scaffold_53 . exon 324520 324682 . + . ID=Phyra80870.1;Parent=Phyra80870;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 . CDS 324787 326745 . + 0 ID=Phyra80870;Parent=Phyra80870;rank=2 scaffold_53 . exon 324787 326745 . + . ID=Phyra80870.2;Parent=Phyra80870;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_53 . biological_region 327654 327654 0.999 - . logic_name=eponine scaffold_53 . biological_region 328051 328055 0.999 + . logic_name=eponine scaffold_53 . repeat_region 328066 328085 . ? . description=trf scaffold_53 . biological_region 330111 330113 0.999 - . logic_name=eponine scaffold_53 . biological_region 330152 330154 0.999 + . logic_name=eponine scaffold_53 . repeat_region 330750 332271 . ? . description=dust scaffold_53 . repeat_region 332660 332667 . ? . description=dust scaffold_53 . repeat_region 336657 337451 . ? . description=dust scaffold_53 . exon 327353 327947 . - . ID=Phyra50480.1;Parent=Phyra50480;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 ensembl protein_coding_gene 329441 330673 . + . ID=Phyra71839;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_53000006;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 329441 330673 . + . ID=Phyra71839;Parent=Phyra71839;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 329441 330673 . + 0 ID=Phyra71839;Parent=Phyra71839;rank=1 scaffold_53 . exon 329441 330673 . + . ID=Phyra71839.1;Parent=Phyra71839;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 333112 333996 . - . ID=Phyra80873;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000066;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 333112 333996 . - . ID=Phyra80873;Parent=Phyra80873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 333112 333996 . - 0 ID=Phyra80873;Parent=Phyra80873;rank=1 scaffold_53 . exon 333112 333996 . - . ID=Phyra80873.1;Parent=Phyra80873;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 346138 347103 . + . ID=Phyra80874;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_53000067;logic_name=jgi_phyra1 scaffold_53 ensembl transcript 346138 347103 . + . ID=Phyra80874;Parent=Phyra80874;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_53 . CDS 346138 347103 . + 0 ID=Phyra80874;Parent=Phyra80874;rank=1 scaffold_53 . exon 346138 347103 . + . ID=Phyra80874.1;Parent=Phyra80874;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_49 1 347663 scaffold_49 . repeat_region 335 368 . ? . description=trf scaffold_49 . repeat_region 1617 1666 . ? . description=dust scaffold_49 . biological_region 8297 8298 0.999 + . logic_name=eponine scaffold_49 . biological_region 8921 8922 0.999 + . logic_name=eponine scaffold_49 . biological_region 8979 8981 0.999 + . logic_name=eponine scaffold_49 . repeat_region 9295 9320 . ? . description=trf scaffold_49 . repeat_region 9295 9320 . ? . description=dust scaffold_49 ensembl protein_coding_gene 8236 10053 . + . ID=Phyra80395;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000001;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 8236 10053 . + . ID=Phyra80395;Parent=Phyra80395;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 8236 8379 . + 0 ID=Phyra80395;Parent=Phyra80395;rank=1 scaffold_49 . exon 8236 8379 . + . ID=Phyra80395.1;Parent=Phyra80395;constitutive=1;rank=1 scaffold_49 . CDS 8482 10053 . + 0 ID=Phyra80395;Parent=Phyra80395;rank=2 scaffold_49 . exon 8482 10053 . + . ID=Phyra80395.2;Parent=Phyra80395;constitutive=1;rank=2 scaffold_49 ensembl protein_coding_gene 10414 13558 . - . ID=Phyra80396;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000002;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 10414 13558 . - . ID=Phyra80396;Parent=Phyra80396;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 10414 10770 . - 0 ID=Phyra80396;Parent=Phyra80396;rank=2 scaffold_49 . exon 10414 10770 . - . ID=Phyra80396.2;Parent=Phyra80396;constitutive=1;rank=2 scaffold_49 . CDS 11381 13558 . - 0 ID=Phyra80396;Parent=Phyra80396;rank=1 scaffold_49 . exon 11381 13558 . - . ID=Phyra80396.1;Parent=Phyra80396;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 13795 15851 . + . ID=Phyra80397;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000003;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 13795 15851 . + . ID=Phyra80397;Parent=Phyra80397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 13795 13934 . + 0 ID=Phyra80397;Parent=Phyra80397;rank=1 scaffold_49 . exon 13795 13934 . + . ID=Phyra80397.1;Parent=Phyra80397;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . CDS 14007 14395 . + 0 ID=Phyra80397;Parent=Phyra80397;rank=2 scaffold_49 . exon 14007 14395 . + . ID=Phyra80397.2;Parent=Phyra80397;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_49 . CDS 14468 14658 . + 0 ID=Phyra80397;Parent=Phyra80397;rank=3 scaffold_49 . exon 14468 14658 . + . ID=Phyra80397.3;Parent=Phyra80397;constitutive=1;ensembl_phase=1;rank=3 scaffold_49 . CDS 14717 14818 . + 0 ID=Phyra80397;Parent=Phyra80397;rank=4 scaffold_49 . exon 14717 14818 . + . ID=Phyra80397.4;Parent=Phyra80397;constitutive=1;rank=4 scaffold_49 . CDS 14898 15851 . + 0 ID=Phyra80397;Parent=Phyra80397;rank=5 scaffold_49 . exon 14898 15851 . + . ID=Phyra80397.5;Parent=Phyra80397;constitutive=1;rank=5 scaffold_49 ensembl protein_coding_gene 16406 18207 . + . ID=Phyra80398;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000004;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 16406 18207 . + . ID=Phyra80398;Parent=Phyra80398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 16406 16563 . + 0 ID=Phyra80398;Parent=Phyra80398;rank=1 scaffold_49 . exon 16406 16563 . + . ID=Phyra80398.1;Parent=Phyra80398;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . CDS 16633 16995 . + 0 ID=Phyra80398;Parent=Phyra80398;rank=2 scaffold_49 . exon 16633 16995 . + . ID=Phyra80398.2;Parent=Phyra80398;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_49 . CDS 17110 17281 . + 0 ID=Phyra80398;Parent=Phyra80398;rank=3 scaffold_49 . exon 17110 17281 . + . ID=Phyra80398.3;Parent=Phyra80398;constitutive=1;ensembl_phase=2;rank=3 scaffold_49 . CDS 17371 17472 . + 0 ID=Phyra80398;Parent=Phyra80398;rank=4 scaffold_49 . exon 17371 17472 . + . ID=Phyra80398.4;Parent=Phyra80398;constitutive=1;rank=4 scaffold_49 . CDS 17556 18132 . + 0 ID=Phyra80398;Parent=Phyra80398;rank=5 scaffold_49 . exon 17556 18132 . + . ID=Phyra80398.5;Parent=Phyra80398;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_49 . CDS 18200 18207 . + 0 ID=Phyra80398;Parent=Phyra80398;rank=6 scaffold_49 . exon 18200 18207 . + . ID=Phyra80398.6;Parent=Phyra80398;constitutive=1;ensembl_phase=1;rank=6 scaffold_49 . repeat_region 18299 28510 . ? . description=dust scaffold_49 . biological_region 29045 29049 0.999 + . logic_name=eponine scaffold_49 . biological_region 29521 29524 0.999 - . logic_name=eponine scaffold_49 ensembl protein_coding_gene 37149 38557 . + . ID=Phyra95705;biotype=protein_coding;external_name=C_scaffold_49000001;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 37149 38557 . + . ID=Phyra95705;Parent=Phyra95705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 37149 37207 . + 0 ID=Phyra95705;Parent=Phyra95705;rank=1 scaffold_49 . exon 37149 37207 . + . ID=Phyra95705.1;Parent=Phyra95705;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . CDS 37249 37576 . + 0 ID=Phyra95705;Parent=Phyra95705;rank=2 scaffold_49 . exon 37249 37576 . + . ID=Phyra95705.2;Parent=Phyra95705;constitutive=1;ensembl_phase=2;rank=2 scaffold_49 . CDS 37597 37624 . + 0 ID=Phyra95705;Parent=Phyra95705;rank=3 scaffold_49 . exon 37597 37624 . + . ID=Phyra95705.3;Parent=Phyra95705;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_49 . CDS 37698 38363 . + 0 ID=Phyra95705;Parent=Phyra95705;rank=4 scaffold_49 . exon 37698 38363 . + . ID=Phyra95705.4;Parent=Phyra95705;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_49 . CDS 38451 38557 . + 0 ID=Phyra95705;Parent=Phyra95705;rank=5 scaffold_49 . exon 38451 38557 . + . ID=Phyra95705.5;Parent=Phyra95705;constitutive=1;ensembl_phase=1;rank=5 scaffold_49 ensembl protein_coding_gene 38823 41155 . - . ID=Phyra95706;biotype=protein_coding;external_name=C_scaffold_49000002;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 38823 41155 . - . ID=Phyra95706;Parent=Phyra95706;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 38823 38842 . - 0 ID=Phyra95706;Parent=Phyra95706;rank=7 scaffold_49 . exon 38823 38842 . - . ID=Phyra95706.7;Parent=Phyra95706;constitutive=1;ensembl_phase=1;rank=7 scaffold_49 . CDS 39055 39540 . - 0 ID=Phyra95706;Parent=Phyra95706;rank=6 scaffold_49 . exon 39055 39540 . - . ID=Phyra95706.6;Parent=Phyra95706;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_49 . CDS 39622 39691 . - 0 ID=Phyra95706;Parent=Phyra95706;rank=5 scaffold_49 . exon 39622 39691 . - . ID=Phyra95706.5;Parent=Phyra95706;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_49 . CDS 39914 40198 . - 0 ID=Phyra95706;Parent=Phyra95706;rank=4 scaffold_49 . CDS 40253 40721 . - 0 ID=Phyra95706;Parent=Phyra95706;rank=3 scaffold_49 . CDS 40842 41039 . - 0 ID=Phyra95706;Parent=Phyra95706;rank=2 scaffold_49 . CDS 41091 41155 . - 0 ID=Phyra95706;Parent=Phyra95706;rank=1 scaffold_49 . biological_region 41330 41332 0.999 + . logic_name=eponine scaffold_49 . biological_region 41354 41357 0.999 + . logic_name=eponine scaffold_49 . repeat_region 42324 42376 . ? . description=trf scaffold_49 . repeat_region 42326 42357 . ? . description=trf scaffold_49 . repeat_region 44819 44836 . ? . description=dust scaffold_49 ensembl protein_coding_gene 41288 42481 . + . ID=Phyra80401;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000007;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 41288 42481 . + . ID=Phyra80401;Parent=Phyra80401;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 41288 42481 . + 0 ID=Phyra80401;Parent=Phyra80401;rank=1 scaffold_49 . exon 41288 42481 . + . ID=Phyra80401.1;Parent=Phyra80401;constitutive=1;rank=1 scaffold_49 . exon 39914 40198 . - . ID=Phyra95706.4;Parent=Phyra95706;constitutive=1;rank=4 scaffold_49 . exon 40253 40721 . - . ID=Phyra95706.3;Parent=Phyra95706;constitutive=1;ensembl_phase=2;rank=3 scaffold_49 . exon 40842 41039 . - . ID=Phyra95706.2;Parent=Phyra95706;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_49 . exon 41091 41155 . - . ID=Phyra95706.1;Parent=Phyra95706;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 ensembl protein_coding_gene 46233 49928 . + . ID=Phyra95707;biotype=protein_coding;external_name=C_scaffold_49000003;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 46233 49928 . + . ID=Phyra95707;Parent=Phyra95707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 46233 46290 . + 0 ID=Phyra95707;Parent=Phyra95707;rank=1 scaffold_49 . exon 46233 46290 . + . ID=Phyra95707.1;Parent=Phyra95707;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . CDS 46366 46784 . + 0 ID=Phyra95707;Parent=Phyra95707;rank=2 scaffold_49 . exon 46366 46784 . + . ID=Phyra95707.2;Parent=Phyra95707;constitutive=1;ensembl_phase=1;rank=2 scaffold_49 . CDS 46931 47034 . + 0 ID=Phyra95707;Parent=Phyra95707;rank=3 scaffold_49 . exon 46931 47034 . + . ID=Phyra95707.3;Parent=Phyra95707;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_49 . CDS 47080 47186 . + 0 ID=Phyra95707;Parent=Phyra95707;rank=4 scaffold_49 . exon 47080 47186 . + . ID=Phyra95707.4;Parent=Phyra95707;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_49 . CDS 47313 47949 . + 0 ID=Phyra95707;Parent=Phyra95707;rank=5 scaffold_49 . exon 47313 47949 . + . ID=Phyra95707.5;Parent=Phyra95707;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_49 . CDS 48029 48047 . + 0 ID=Phyra95707;Parent=Phyra95707;rank=6 scaffold_49 . exon 48029 48047 . + . ID=Phyra95707.6;Parent=Phyra95707;constitutive=1;ensembl_phase=2;rank=6 scaffold_49 . CDS 48533 48620 . + 0 ID=Phyra95707;Parent=Phyra95707;rank=7 scaffold_49 . exon 48533 48620 . + . ID=Phyra95707.7;Parent=Phyra95707;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_49 . CDS 48654 48848 . + 0 ID=Phyra95707;Parent=Phyra95707;rank=8 scaffold_49 . exon 48654 48848 . + . ID=Phyra95707.8;Parent=Phyra95707;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_49 . CDS 49182 49349 . + 0 ID=Phyra95707;Parent=Phyra95707;rank=9 scaffold_49 . exon 49182 49349 . + . ID=Phyra95707.9;Parent=Phyra95707;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_49 . CDS 49551 49819 . + 0 ID=Phyra95707;Parent=Phyra95707;rank=10 scaffold_49 . exon 49551 49819 . + . ID=Phyra95707.10;Parent=Phyra95707;constitutive=1;ensembl_phase=1;rank=10 scaffold_49 . CDS 49881 49928 . + 0 ID=Phyra95707;Parent=Phyra95707;rank=11 scaffold_49 ensembl protein_coding_gene 51561 52832 . - . ID=Phyra49720;biotype=protein_coding;external_name=gwEuk.49.68.1;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 51561 52832 . - . ID=Phyra49720;Parent=Phyra49720;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 51561 52193 . - 0 ID=Phyra49720;Parent=Phyra49720;rank=4 scaffold_49 . exon 51561 52193 . - . ID=Phyra49720.4;Parent=Phyra49720;constitutive=1;rank=4 scaffold_49 . CDS 52261 52460 . - 0 ID=Phyra49720;Parent=Phyra49720;rank=3 scaffold_49 . exon 52261 52460 . - . ID=Phyra49720.3;Parent=Phyra49720;constitutive=1;ensembl_phase=1;rank=3 scaffold_49 . CDS 52526 52637 . - 0 ID=Phyra49720;Parent=Phyra49720;rank=2 scaffold_49 . exon 52526 52637 . - . ID=Phyra49720.2;Parent=Phyra49720;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_49 . CDS 52704 52832 . - 0 ID=Phyra49720;Parent=Phyra49720;rank=1 scaffold_49 . exon 52704 52832 . - . ID=Phyra49720.1;Parent=Phyra49720;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 53286 55474 . - . ID=Phyra80405;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000011;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 53286 55474 . - . ID=Phyra80405;Parent=Phyra80405;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 53286 54190 . - 0 ID=Phyra80405;Parent=Phyra80405;rank=3 scaffold_49 . exon 53286 54190 . - . ID=Phyra80405.3;Parent=Phyra80405;constitutive=1;ensembl_phase=1;rank=3 scaffold_49 . CDS 54287 54291 . - 0 ID=Phyra80405;Parent=Phyra80405;rank=2 scaffold_49 . exon 54287 54291 . - . ID=Phyra80405.2;Parent=Phyra80405;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_49 . CDS 54369 55474 . - 0 ID=Phyra80405;Parent=Phyra80405;rank=1 scaffold_49 . exon 54369 55474 . - . ID=Phyra80405.1;Parent=Phyra80405;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . exon 49881 49928 . + . ID=Phyra95707.11;Parent=Phyra95707;constitutive=1;rank=11 scaffold_49 ensembl protein_coding_gene 55979 58506 . - . ID=Phyra95709;biotype=protein_coding;external_name=C_scaffold_49000005;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 55979 58506 . - . ID=Phyra95709;Parent=Phyra95709;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 55979 56234 . - 0 ID=Phyra95709;Parent=Phyra95709;rank=10 scaffold_49 . exon 55979 56234 . - . ID=Phyra95709.10;Parent=Phyra95709;constitutive=1;ensembl_phase=2;rank=10 scaffold_49 . CDS 56256 56328 . - 0 ID=Phyra95709;Parent=Phyra95709;rank=9 scaffold_49 . exon 56256 56328 . - . ID=Phyra95709.9;Parent=Phyra95709;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_49 . CDS 56407 56485 . - 0 ID=Phyra95709;Parent=Phyra95709;rank=8 scaffold_49 . exon 56407 56485 . - . ID=Phyra95709.8;Parent=Phyra95709;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_49 . CDS 56534 56617 . - 0 ID=Phyra95709;Parent=Phyra95709;rank=7 scaffold_49 . exon 56534 56617 . - . ID=Phyra95709.7;Parent=Phyra95709;constitutive=1;rank=7 scaffold_49 . CDS 56695 56998 . - 0 ID=Phyra95709;Parent=Phyra95709;rank=6 scaffold_49 . exon 56695 56998 . - . ID=Phyra95709.6;Parent=Phyra95709;constitutive=1;ensembl_phase=2;rank=6 scaffold_49 . CDS 57236 57410 . - 0 ID=Phyra95709;Parent=Phyra95709;rank=5 scaffold_49 . exon 57236 57410 . - . ID=Phyra95709.5;Parent=Phyra95709;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_49 . CDS 57540 57665 . - 0 ID=Phyra95709;Parent=Phyra95709;rank=4 scaffold_49 . exon 57540 57665 . - . ID=Phyra95709.4;Parent=Phyra95709;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_49 . CDS 57876 58128 . - 0 ID=Phyra95709;Parent=Phyra95709;rank=3 scaffold_49 . exon 57876 58128 . - . ID=Phyra95709.3;Parent=Phyra95709;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_49 . CDS 58225 58314 . - 0 ID=Phyra95709;Parent=Phyra95709;rank=2 scaffold_49 . exon 58225 58314 . - . ID=Phyra95709.2;Parent=Phyra95709;constitutive=1;rank=2 scaffold_49 . CDS 58389 58505 . - 0 ID=Phyra95709;Parent=Phyra95709;rank=1 scaffold_49 . exon 58389 58506 . - . ID=Phyra95709.1;Parent=Phyra95709;constitutive=1;ensembl_phase=-1;rank=1 scaffold_49 . repeat_region 66937 66956 . ? . description=dust scaffold_49 ensembl protein_coding_gene 69382 70866 . - . ID=Phyra71794;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_49000002;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 69382 70866 . - . ID=Phyra71794;Parent=Phyra71794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 69382 70866 . - 0 ID=Phyra71794;Parent=Phyra71794;rank=1 scaffold_49 . exon 69382 70866 . - . ID=Phyra71794.1;Parent=Phyra71794;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 62556 63626 . - . ID=Phyra80407;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000013;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 62556 63626 . - . ID=Phyra80407;Parent=Phyra80407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 62556 62677 . - 0 ID=Phyra80407;Parent=Phyra80407;rank=3 scaffold_49 . exon 62556 62677 . - . ID=Phyra80407.3;Parent=Phyra80407;constitutive=1;ensembl_phase=1;rank=3 scaffold_49 . CDS 62824 63129 . - 0 ID=Phyra80407;Parent=Phyra80407;rank=2 scaffold_49 . exon 62824 63129 . - . ID=Phyra80407.2;Parent=Phyra80407;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_49 . CDS 63248 63626 . - 0 ID=Phyra80407;Parent=Phyra80407;rank=1 scaffold_49 . exon 63248 63626 . - . ID=Phyra80407.1;Parent=Phyra80407;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . biological_region 77926 77927 0.999 - . logic_name=eponine scaffold_49 . biological_region 77978 77982 0.999 - . logic_name=eponine scaffold_49 . biological_region 78017 78019 0.999 + . logic_name=eponine scaffold_49 . biological_region 78056 78056 0.999 + . logic_name=eponine scaffold_49 . biological_region 78080 78085 0.999 - . logic_name=eponine scaffold_49 . biological_region 78132 78136 0.999 - . logic_name=eponine scaffold_49 ensembl tRNA_gene 74428 74507 . + . ID=EPrPRAG00000000025;biotype=tRNA;description=tRNA-Leu for anticodon AAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_49 ensembl transcript 74428 74507 . + . ID=EPrPRAT00000000025;Parent=EPrPRAG00000000025;biotype=tRNA;logic_name=ncrna_eg scaffold_49 ensembl tRNA_gene 75182 75261 . + . ID=EPrPRAG00000000152;biotype=tRNA;description=tRNA-Leu for anticodon AAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_49 ensembl transcript 75182 75261 . + . ID=EPrPRAT00000000152;Parent=EPrPRAG00000000152;biotype=tRNA;logic_name=ncrna_eg scaffold_49 . exon 74428 74507 . + . ID=EPrPRAE00000000025;Parent=EPrPRAT00000000025;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . exon 75182 75261 . + . ID=EPrPRAE00000000152;Parent=EPrPRAT00000000152;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 ensembl protein_coding_gene 71115 73296 . - . ID=Phyra80409;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000015;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 71115 73296 . - . ID=Phyra80409;Parent=Phyra80409;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 71115 72317 . - 0 ID=Phyra80409;Parent=Phyra80409;rank=2 scaffold_49 . exon 71115 72317 . - . ID=Phyra80409.2;Parent=Phyra80409;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_49 . CDS 72471 73296 . - 0 ID=Phyra80409;Parent=Phyra80409;rank=1 scaffold_49 . exon 72471 73296 . - . ID=Phyra80409.1;Parent=Phyra80409;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . repeat_region 85391 85437 . ? . description=trf scaffold_49 ensembl protein_coding_gene 83372 85389 . - . ID=Phyra49727;biotype=protein_coding;external_name=gwEuk.49.75.1;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 83372 85389 . - . ID=Phyra49727;Parent=Phyra49727;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 83372 83458 . - 0 ID=Phyra49727;Parent=Phyra49727;rank=2 scaffold_49 . exon 83372 83458 . - . ID=Phyra49727.2;Parent=Phyra49727;constitutive=1;rank=2 scaffold_49 . CDS 83536 85389 . - 0 ID=Phyra49727;Parent=Phyra49727;rank=1 scaffold_49 . exon 83536 85389 . - . ID=Phyra49727.1;Parent=Phyra49727;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 80843 81369 . - . ID=Phyra80410;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000016;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 80843 81369 . - . ID=Phyra80410;Parent=Phyra80410;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 80843 81066 . - 0 ID=Phyra80410;Parent=Phyra80410;rank=2 scaffold_49 . exon 80843 81066 . - . ID=Phyra80410.2;Parent=Phyra80410;constitutive=1;ensembl_phase=1;rank=2 scaffold_49 . CDS 81147 81369 . - 0 ID=Phyra80410;Parent=Phyra80410;rank=1 scaffold_49 . exon 81147 81369 . - . ID=Phyra80410.1;Parent=Phyra80410;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 ensembl protein_coding_gene 81825 83163 . + . ID=Phyra80411;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000017;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 81825 83163 . + . ID=Phyra80411;Parent=Phyra80411;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 81825 81854 . + 0 ID=Phyra80411;Parent=Phyra80411;rank=1 scaffold_49 . exon 81825 81854 . + . ID=Phyra80411.1;Parent=Phyra80411;constitutive=1;rank=1 scaffold_49 . CDS 81928 82030 . + 0 ID=Phyra80411;Parent=Phyra80411;rank=2 scaffold_49 . exon 81928 82030 . + . ID=Phyra80411.2;Parent=Phyra80411;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_49 . CDS 82100 83163 . + 0 ID=Phyra80411;Parent=Phyra80411;rank=3 scaffold_49 . exon 82100 83163 . + . ID=Phyra80411.3;Parent=Phyra80411;constitutive=1;ensembl_phase=1;rank=3 scaffold_49 ensembl protein_coding_gene 86038 87347 . + . ID=Phyra80413;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000019;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 86038 87347 . + . ID=Phyra80413;Parent=Phyra80413;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 86038 86640 . + 0 ID=Phyra80413;Parent=Phyra80413;rank=1 scaffold_49 . exon 86038 86640 . + . ID=Phyra80413.1;Parent=Phyra80413;constitutive=1;rank=1 scaffold_49 . CDS 86712 87347 . + 0 ID=Phyra80413;Parent=Phyra80413;rank=2 scaffold_49 . exon 86712 87347 . + . ID=Phyra80413.2;Parent=Phyra80413;constitutive=1;rank=2 scaffold_49 ensembl protein_coding_gene 87559 90570 . - . ID=Phyra80414;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000020;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 87559 90570 . - . ID=Phyra80414;Parent=Phyra80414;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 87559 90570 . - 0 ID=Phyra80414;Parent=Phyra80414;rank=1 scaffold_49 . exon 87559 90570 . - . ID=Phyra80414.1;Parent=Phyra80414;constitutive=1;rank=1 scaffold_49 . biological_region 90133 90133 0.999 + . logic_name=eponine scaffold_49 . biological_region 90702 90707 0.999 - . logic_name=eponine scaffold_49 . biological_region 91184 91188 0.999 + . logic_name=eponine scaffold_49 . biological_region 92790 92794 0.999 + . logic_name=eponine scaffold_49 . biological_region 92803 92808 0.999 + . logic_name=eponine scaffold_49 . repeat_region 92925 95113 . ? . description=dust scaffold_49 . biological_region 95305 95310 0.999 - . logic_name=eponine scaffold_49 . biological_region 96870 96871 0.999 + . logic_name=eponine scaffold_49 . biological_region 96973 96978 0.999 - . logic_name=eponine scaffold_49 . biological_region 96987 96991 0.999 - . logic_name=eponine scaffold_49 . repeat_region 98681 98688 . ? . description=dust scaffold_49 ensembl protein_coding_gene 95593 97188 . + . ID=Phyra71795;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_49000003;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 95593 97188 . + . ID=Phyra71795;Parent=Phyra71795;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 95593 97188 . + 0 ID=Phyra71795;Parent=Phyra71795;rank=1 scaffold_49 . exon 95593 97188 . + . ID=Phyra71795.1;Parent=Phyra71795;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 100298 102358 . - . ID=Phyra80416;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000022;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 100298 102358 . - . ID=Phyra80416;Parent=Phyra80416;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 100298 102358 . - 0 ID=Phyra80416;Parent=Phyra80416;rank=1 scaffold_49 . exon 100298 102358 . - . ID=Phyra80416.1;Parent=Phyra80416;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 103155 104305 . - . ID=Phyra80417;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000023;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 103155 104305 . - . ID=Phyra80417;Parent=Phyra80417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 103155 103891 . - 0 ID=Phyra80417;Parent=Phyra80417;rank=2 scaffold_49 . exon 103155 103891 . - . ID=Phyra80417.2;Parent=Phyra80417;constitutive=1;ensembl_phase=1;rank=2 scaffold_49 . CDS 103954 104305 . - 0 ID=Phyra80417;Parent=Phyra80417;rank=1 scaffold_49 . exon 103954 104305 . - . ID=Phyra80417.1;Parent=Phyra80417;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 ensembl protein_coding_gene 105759 106850 . - . ID=Phyra80418;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000024;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 105759 106850 . - . ID=Phyra80418;Parent=Phyra80418;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 105759 105781 . - 0 ID=Phyra80418;Parent=Phyra80418;rank=4 scaffold_49 . exon 105759 105781 . - . ID=Phyra80418.4;Parent=Phyra80418;constitutive=1;ensembl_phase=1;rank=4 scaffold_49 . CDS 105929 106353 . - 0 ID=Phyra80418;Parent=Phyra80418;rank=3 scaffold_49 . exon 105929 106353 . - . ID=Phyra80418.3;Parent=Phyra80418;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_49 . CDS 106423 106634 . - 0 ID=Phyra80418;Parent=Phyra80418;rank=2 scaffold_49 . exon 106423 106634 . - . ID=Phyra80418.2;Parent=Phyra80418;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_49 . CDS 106695 106850 . - 0 ID=Phyra80418;Parent=Phyra80418;rank=1 scaffold_49 . exon 106695 106850 . - . ID=Phyra80418.1;Parent=Phyra80418;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 106947 107700 . + . ID=Phyra80419;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000025;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 106947 107700 . + . ID=Phyra80419;Parent=Phyra80419;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 106947 107308 . + 0 ID=Phyra80419;Parent=Phyra80419;rank=1 scaffold_49 . exon 106947 107308 . + . ID=Phyra80419.1;Parent=Phyra80419;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . CDS 107388 107700 . + 0 ID=Phyra80419;Parent=Phyra80419;rank=2 scaffold_49 . exon 107388 107700 . + . ID=Phyra80419.2;Parent=Phyra80419;constitutive=1;ensembl_phase=2;rank=2 scaffold_49 ensembl protein_coding_gene 109028 111042 . - . ID=Phyra80420;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000026;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 109028 111042 . - . ID=Phyra80420;Parent=Phyra80420;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 109028 110537 . - 0 ID=Phyra80420;Parent=Phyra80420;rank=3 scaffold_49 . exon 109028 110537 . - . ID=Phyra80420.3;Parent=Phyra80420;constitutive=1;ensembl_phase=2;rank=3 scaffold_49 . CDS 110611 110655 . - 0 ID=Phyra80420;Parent=Phyra80420;rank=2 scaffold_49 . CDS 110741 111042 . - 0 ID=Phyra80420;Parent=Phyra80420;rank=1 scaffold_49 . repeat_region 110664 110673 . ? . description=dust scaffold_49 . biological_region 110877 110878 0.999 - . logic_name=eponine scaffold_49 . repeat_region 111600 111628 . ? . description=dust scaffold_49 . repeat_region 111606 111634 . ? . description=trf scaffold_49 . biological_region 111758 111764 0.999 + . logic_name=eponine scaffold_49 . biological_region 114080 114081 0.999 - . logic_name=eponine scaffold_49 ensembl protein_coding_gene 113935 115343 . - . ID=Phyra49740;biotype=protein_coding;external_name=gwEuk.49.88.1;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 113935 115343 . - . ID=Phyra49740;Parent=Phyra49740;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 113935 114104 . - 0 ID=Phyra49740;Parent=Phyra49740;rank=3 scaffold_49 . exon 113935 114104 . - . ID=Phyra49740.3;Parent=Phyra49740;constitutive=1;ensembl_phase=1;rank=3 scaffold_49 . CDS 114342 115152 . - 0 ID=Phyra49740;Parent=Phyra49740;rank=2 scaffold_49 . exon 114342 115152 . - . ID=Phyra49740.2;Parent=Phyra49740;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_49 . CDS 115266 115343 . - 0 ID=Phyra49740;Parent=Phyra49740;rank=1 scaffold_49 . exon 115266 115343 . - . ID=Phyra49740.1;Parent=Phyra49740;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 112067 113391 . - . ID=Phyra71796;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_49000004;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 112067 113391 . - . ID=Phyra71796;Parent=Phyra71796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 112067 112105 . - 0 ID=Phyra71796;Parent=Phyra71796;rank=5 scaffold_49 . exon 112067 112105 . - . ID=Phyra71796.5;Parent=Phyra71796;constitutive=1;rank=5 scaffold_49 . CDS 112127 112315 . - 0 ID=Phyra71796;Parent=Phyra71796;rank=4 scaffold_49 . exon 112127 112315 . - . ID=Phyra71796.4;Parent=Phyra71796;constitutive=1;rank=4 scaffold_49 . CDS 112390 112949 . - 0 ID=Phyra71796;Parent=Phyra71796;rank=3 scaffold_49 . exon 112390 112949 . - . ID=Phyra71796.3;Parent=Phyra71796;constitutive=1;ensembl_phase=1;rank=3 scaffold_49 . CDS 113022 113241 . - 0 ID=Phyra71796;Parent=Phyra71796;rank=2 scaffold_49 . exon 113022 113241 . - . ID=Phyra71796.2;Parent=Phyra71796;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_49 . CDS 113326 113391 . - 0 ID=Phyra71796;Parent=Phyra71796;rank=1 scaffold_49 . exon 113326 113391 . - . ID=Phyra71796.1;Parent=Phyra71796;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 115895 118282 . + . ID=Phyra71797;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_49000005;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 115895 118282 . + . ID=Phyra71797;Parent=Phyra71797;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 115895 116165 . + 0 ID=Phyra71797;Parent=Phyra71797;rank=1 scaffold_49 . exon 115895 116165 . + . ID=Phyra71797.1;Parent=Phyra71797;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . CDS 116189 116286 . + 0 ID=Phyra71797;Parent=Phyra71797;rank=2 scaffold_49 . exon 116189 116286 . + . ID=Phyra71797.2;Parent=Phyra71797;constitutive=1;ensembl_phase=1;rank=2 scaffold_49 . CDS 116352 116450 . + 0 ID=Phyra71797;Parent=Phyra71797;rank=3 scaffold_49 . exon 116352 116450 . + . ID=Phyra71797.3;Parent=Phyra71797;constitutive=1;rank=3 scaffold_49 . CDS 116519 116770 . + 0 ID=Phyra71797;Parent=Phyra71797;rank=4 scaffold_49 . exon 116519 116770 . + . ID=Phyra71797.4;Parent=Phyra71797;constitutive=1;rank=4 scaffold_49 . CDS 116871 116954 . + 0 ID=Phyra71797;Parent=Phyra71797;rank=5 scaffold_49 . exon 116871 116954 . + . ID=Phyra71797.5;Parent=Phyra71797;constitutive=1;rank=5 scaffold_49 . CDS 117025 117108 . + 0 ID=Phyra71797;Parent=Phyra71797;rank=6 scaffold_49 . exon 117025 117108 . + . ID=Phyra71797.6;Parent=Phyra71797;constitutive=1;rank=6 scaffold_49 . CDS 117167 117220 . + 0 ID=Phyra71797;Parent=Phyra71797;rank=7 scaffold_49 . exon 117167 117220 . + . ID=Phyra71797.7;Parent=Phyra71797;constitutive=1;rank=7 scaffold_49 . CDS 117307 117480 . + 0 ID=Phyra71797;Parent=Phyra71797;rank=8 scaffold_49 . exon 117307 117480 . + . ID=Phyra71797.8;Parent=Phyra71797;constitutive=1;rank=8 scaffold_49 . CDS 117555 117638 . + 0 ID=Phyra71797;Parent=Phyra71797;rank=9 scaffold_49 . exon 117555 117638 . + . ID=Phyra71797.9;Parent=Phyra71797;constitutive=1;rank=9 scaffold_49 . CDS 118056 118155 . + 0 ID=Phyra71797;Parent=Phyra71797;rank=10 scaffold_49 . exon 118056 118155 . + . ID=Phyra71797.10;Parent=Phyra71797;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_49 . CDS 118269 118282 . + 0 ID=Phyra71797;Parent=Phyra71797;rank=11 scaffold_49 . exon 118269 118282 . + . ID=Phyra71797.11;Parent=Phyra71797;constitutive=1;ensembl_phase=1;rank=11 scaffold_49 . exon 110611 110655 . - . ID=Phyra80420.2;Parent=Phyra80420;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_49 . exon 110741 111042 . - . ID=Phyra80420.1;Parent=Phyra80420;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 ensembl protein_coding_gene 118991 120970 . - . ID=Phyra80424;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000030;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 118991 120970 . - . ID=Phyra80424;Parent=Phyra80424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 118991 120970 . - 0 ID=Phyra80424;Parent=Phyra80424;rank=1 scaffold_49 . exon 118991 120970 . - . ID=Phyra80424.1;Parent=Phyra80424;constitutive=1;rank=1 scaffold_49 ensembl pseudogene 122469 122711 . + . ID=Phyra49751;biotype=pseudogene;external_name=gwEuk.49.99.1;logic_name=jgi_phyra1 scaffold_49 ensembl pseudogene 122469 122711 . + . ID=Phyra49751;Parent=Phyra49751;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_49 . exon 122469 122711 . + . ID=Phyra49751.1;Parent=Phyra49751;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 126834 129728 . + . ID=Phyra80425;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000031;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 126834 129728 . + . ID=Phyra80425;Parent=Phyra80425;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 126834 128367 . + 0 ID=Phyra80425;Parent=Phyra80425;rank=1 scaffold_49 . exon 126834 128367 . + . ID=Phyra80425.1;Parent=Phyra80425;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . CDS 128668 129728 . + 0 ID=Phyra80425;Parent=Phyra80425;rank=2 scaffold_49 . exon 128668 129728 . + . ID=Phyra80425.2;Parent=Phyra80425;constitutive=1;ensembl_phase=1;rank=2 scaffold_49 . repeat_region 130067 130106 . ? . description=dust scaffold_49 . repeat_region 130421 130429 . ? . description=dust scaffold_49 . repeat_region 130757 130764 . ? . description=dust scaffold_49 . biological_region 130994 130995 0.999 + . logic_name=eponine scaffold_49 ensembl protein_coding_gene 132065 132683 . + . ID=Phyra71798;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_49000006;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 132065 132683 . + . ID=Phyra71798;Parent=Phyra71798;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 132065 132631 . + 0 ID=Phyra71798;Parent=Phyra71798;rank=1 scaffold_49 . exon 132065 132631 . + . ID=Phyra71798.1;Parent=Phyra71798;constitutive=1;rank=1 scaffold_49 . CDS 132651 132683 . + 0 ID=Phyra71798;Parent=Phyra71798;rank=2 scaffold_49 . exon 132651 132683 . + . ID=Phyra71798.2;Parent=Phyra71798;constitutive=1;rank=2 scaffold_49 ensembl protein_coding_gene 130820 131557 . - . ID=Phyra80426;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000032;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 130820 131557 . - . ID=Phyra80426;Parent=Phyra80426;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 130820 131557 . - 0 ID=Phyra80426;Parent=Phyra80426;rank=1 scaffold_49 . exon 130820 131557 . - . ID=Phyra80426.1;Parent=Phyra80426;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 145074 147836 . - . ID=Phyra80428;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000034;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 145074 147836 . - . ID=Phyra80428;Parent=Phyra80428;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 145074 147836 . - 0 ID=Phyra80428;Parent=Phyra80428;rank=1 scaffold_49 . exon 145074 147836 . - . ID=Phyra80428.1;Parent=Phyra80428;constitutive=1;rank=1 scaffold_49 . repeat_region 149694 149702 . ? . description=dust scaffold_49 . repeat_region 151116 151159 . ? . description=trf scaffold_49 . biological_region 154141 154146 0.999 + . logic_name=eponine scaffold_49 . biological_region 157038 157042 0.999 + . logic_name=eponine scaffold_49 . biological_region 158388 158392 0.999 - . logic_name=eponine scaffold_49 . biological_region 158413 158413 0.999 - . logic_name=eponine scaffold_49 ensembl protein_coding_gene 150181 151257 . + . ID=Phyra80429;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000035;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 150181 151257 . + . ID=Phyra80429;Parent=Phyra80429;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 150181 151257 . + 0 ID=Phyra80429;Parent=Phyra80429;rank=1 scaffold_49 . exon 150181 151257 . + . ID=Phyra80429.1;Parent=Phyra80429;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 151502 153497 . - . ID=Phyra80430;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000036;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 151502 153497 . - . ID=Phyra80430;Parent=Phyra80430;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 151502 151889 . - 0 ID=Phyra80430;Parent=Phyra80430;rank=7 scaffold_49 . exon 151502 151889 . - . ID=Phyra80430.7;Parent=Phyra80430;constitutive=1;ensembl_phase=2;rank=7 scaffold_49 . CDS 151971 152042 . - 0 ID=Phyra80430;Parent=Phyra80430;rank=6 scaffold_49 . exon 151971 152042 . - . ID=Phyra80430.6;Parent=Phyra80430;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_49 . CDS 152121 152542 . - 0 ID=Phyra80430;Parent=Phyra80430;rank=5 scaffold_49 . exon 152121 152542 . - . ID=Phyra80430.5;Parent=Phyra80430;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_49 . CDS 152628 152742 . - 0 ID=Phyra80430;Parent=Phyra80430;rank=4 scaffold_49 . exon 152628 152742 . - . ID=Phyra80430.4;Parent=Phyra80430;constitutive=1;ensembl_phase=2;rank=4 scaffold_49 . CDS 152797 152865 . - 0 ID=Phyra80430;Parent=Phyra80430;rank=3 scaffold_49 . exon 152797 152865 . - . ID=Phyra80430.3;Parent=Phyra80430;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_49 . CDS 152931 153348 . - 0 ID=Phyra80430;Parent=Phyra80430;rank=2 scaffold_49 . exon 152931 153348 . - . ID=Phyra80430.2;Parent=Phyra80430;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_49 . CDS 153440 153497 . - 0 ID=Phyra80430;Parent=Phyra80430;rank=1 scaffold_49 . exon 153440 153497 . - . ID=Phyra80430.1;Parent=Phyra80430;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 ensembl protein_coding_gene 153636 154925 . + . ID=Phyra80431;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000037;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 153636 154925 . + . ID=Phyra80431;Parent=Phyra80431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 153636 154925 . + 0 ID=Phyra80431;Parent=Phyra80431;rank=1 scaffold_49 . exon 153636 154925 . + . ID=Phyra80431.1;Parent=Phyra80431;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 155367 157217 . - . ID=Phyra80432;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000038;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 155367 157217 . - . ID=Phyra80432;Parent=Phyra80432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 155367 157217 . - 0 ID=Phyra80432;Parent=Phyra80432;rank=1 scaffold_49 . exon 155367 157217 . - . ID=Phyra80432.1;Parent=Phyra80432;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 158258 165618 . + . ID=Phyra80433;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000039;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 158258 165618 . + . ID=Phyra80433;Parent=Phyra80433;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 158258 158823 . + 0 ID=Phyra80433;Parent=Phyra80433;rank=1 scaffold_49 . exon 158258 158823 . + . ID=Phyra80433.1;Parent=Phyra80433;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . CDS 158899 160377 . + 0 ID=Phyra80433;Parent=Phyra80433;rank=2 scaffold_49 . exon 158899 160377 . + . ID=Phyra80433.2;Parent=Phyra80433;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_49 . CDS 160645 160987 . + 0 ID=Phyra80433;Parent=Phyra80433;rank=3 scaffold_49 . CDS 161083 161262 . + 0 ID=Phyra80433;Parent=Phyra80433;rank=4 scaffold_49 . CDS 161344 165618 . + 0 ID=Phyra80433;Parent=Phyra80433;rank=5 scaffold_49 . exon 160645 160987 . + . ID=Phyra80433.3;Parent=Phyra80433;constitutive=1;ensembl_phase=2;rank=3 scaffold_49 . exon 161083 161262 . + . ID=Phyra80433.4;Parent=Phyra80433;constitutive=1;rank=4 scaffold_49 . exon 161344 165618 . + . ID=Phyra80433.5;Parent=Phyra80433;constitutive=1;rank=5 scaffold_49 ensembl protein_coding_gene 165773 167386 . - . ID=Phyra80434;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000040;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 165773 167386 . - . ID=Phyra80434;Parent=Phyra80434;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 165773 166727 . - 0 ID=Phyra80434;Parent=Phyra80434;rank=3 scaffold_49 . exon 165773 166727 . - . ID=Phyra80434.3;Parent=Phyra80434;constitutive=1;ensembl_phase=2;rank=3 scaffold_49 . CDS 166789 167133 . - 0 ID=Phyra80434;Parent=Phyra80434;rank=2 scaffold_49 . exon 166789 167133 . - . ID=Phyra80434.2;Parent=Phyra80434;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_49 . CDS 167202 167386 . - 0 ID=Phyra80434;Parent=Phyra80434;rank=1 scaffold_49 . exon 167202 167386 . - . ID=Phyra80434.1;Parent=Phyra80434;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 ensembl protein_coding_gene 167516 168030 . + . ID=Phyra80435;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000041;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 167516 168030 . + . ID=Phyra80435;Parent=Phyra80435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 167516 167584 . + 0 ID=Phyra80435;Parent=Phyra80435;rank=1 scaffold_49 . exon 167516 167584 . + . ID=Phyra80435.1;Parent=Phyra80435;constitutive=1;rank=1 scaffold_49 . CDS 167679 167830 . + 0 ID=Phyra80435;Parent=Phyra80435;rank=2 scaffold_49 . exon 167679 167830 . + . ID=Phyra80435.2;Parent=Phyra80435;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_49 . CDS 167904 168030 . + 0 ID=Phyra80435;Parent=Phyra80435;rank=3 scaffold_49 . exon 167904 168030 . + . ID=Phyra80435.3;Parent=Phyra80435;constitutive=1;ensembl_phase=2;rank=3 scaffold_49 ensembl protein_coding_gene 168301 170810 . - . ID=Phyra80436;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000042;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 168301 170810 . - . ID=Phyra80436;Parent=Phyra80436;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 168301 168305 . - 0 ID=Phyra80436;Parent=Phyra80436;rank=2 scaffold_49 . exon 168301 168305 . - . ID=Phyra80436.2;Parent=Phyra80436;constitutive=1;ensembl_phase=1;rank=2 scaffold_49 . CDS 168335 170810 . - 0 ID=Phyra80436;Parent=Phyra80436;rank=1 scaffold_49 . exon 168335 170810 . - . ID=Phyra80436.1;Parent=Phyra80436;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . biological_region 177311 177316 0.999 + . logic_name=eponine scaffold_49 . biological_region 177342 177346 0.999 + . logic_name=eponine scaffold_49 . biological_region 177371 177373 0.999 - . logic_name=eponine scaffold_49 . biological_region 177846 177852 0.999 + . logic_name=eponine scaffold_49 . biological_region 177884 177886 0.999 + . logic_name=eponine scaffold_49 . biological_region 177932 177936 0.999 - . logic_name=eponine scaffold_49 . biological_region 177938 177940 0.999 + . logic_name=eponine scaffold_49 . biological_region 177957 177964 0.999 - . logic_name=eponine scaffold_49 . biological_region 178810 178810 0.999 + . logic_name=eponine scaffold_49 ensembl protein_coding_gene 177859 179388 . + . ID=Phyra71799;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_49000007;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 177859 179388 . + . ID=Phyra71799;Parent=Phyra71799;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 177859 178041 . + 0 ID=Phyra71799;Parent=Phyra71799;rank=1 scaffold_49 . exon 177859 178041 . + . ID=Phyra71799.1;Parent=Phyra71799;constitutive=1;rank=1 scaffold_49 . CDS 178090 179388 . + 0 ID=Phyra71799;Parent=Phyra71799;rank=2 scaffold_49 . exon 178090 179388 . + . ID=Phyra71799.2;Parent=Phyra71799;constitutive=1;rank=2 scaffold_49 ensembl protein_coding_gene 171260 171771 . + . ID=Phyra80437;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000043;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 171260 171771 . + . ID=Phyra80437;Parent=Phyra80437;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 171260 171407 . + 0 ID=Phyra80437;Parent=Phyra80437;rank=1 scaffold_49 . exon 171260 171407 . + . ID=Phyra80437.1;Parent=Phyra80437;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . CDS 171478 171642 . + 0 ID=Phyra80437;Parent=Phyra80437;rank=2 scaffold_49 . exon 171478 171642 . + . ID=Phyra80437.2;Parent=Phyra80437;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_49 . CDS 171704 171771 . + 0 ID=Phyra80437;Parent=Phyra80437;rank=3 scaffold_49 . exon 171704 171771 . + . ID=Phyra80437.3;Parent=Phyra80437;constitutive=1;ensembl_phase=1;rank=3 scaffold_49 ensembl protein_coding_gene 171898 177474 . - . ID=Phyra80438;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000044;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 171898 177474 . - . ID=Phyra80438;Parent=Phyra80438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 171898 177474 . - 0 ID=Phyra80438;Parent=Phyra80438;rank=1 scaffold_49 . exon 171898 177474 . - . ID=Phyra80438.1;Parent=Phyra80438;constitutive=1;rank=1 scaffold_49 . repeat_region 182386 182405 . ? . description=trf scaffold_49 . repeat_region 182480 182487 . ? . description=dust scaffold_49 . repeat_region 183397 183446 . ? . description=dust scaffold_49 ensembl protein_coding_gene 186681 188108 . + . ID=Phyra49765;biotype=protein_coding;external_name=gwEuk.49.113.1;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 186681 188108 . + . ID=Phyra49765;Parent=Phyra49765;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 186681 188108 . + 0 ID=Phyra49765;Parent=Phyra49765;rank=1 scaffold_49 . exon 186681 188108 . + . ID=Phyra49765.1;Parent=Phyra49765;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 188469 189992 . + . ID=Phyra71801;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_49000009;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 188469 189992 . + . ID=Phyra71801;Parent=Phyra71801;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 188469 188678 . + 0 ID=Phyra71801;Parent=Phyra71801;rank=1 scaffold_49 . exon 188469 188678 . + . ID=Phyra71801.1;Parent=Phyra71801;constitutive=1;rank=1 scaffold_49 . CDS 188703 189992 . + 0 ID=Phyra71801;Parent=Phyra71801;rank=2 scaffold_49 . exon 188703 189992 . + . ID=Phyra71801.2;Parent=Phyra71801;constitutive=1;rank=2 scaffold_49 ensembl protein_coding_gene 179520 182149 . - . ID=Phyra80440;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000046;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 179520 182149 . - . ID=Phyra80440;Parent=Phyra80440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 179520 181085 . - 0 ID=Phyra80440;Parent=Phyra80440;rank=2 scaffold_49 . exon 179520 181085 . - . ID=Phyra80440.2;Parent=Phyra80440;constitutive=1;rank=2 scaffold_49 . CDS 181289 182149 . - 0 ID=Phyra80440;Parent=Phyra80440;rank=1 scaffold_49 . exon 181289 182149 . - . ID=Phyra80440.1;Parent=Phyra80440;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 182675 183979 . - . ID=Phyra80441;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000047;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 182675 183979 . - . ID=Phyra80441;Parent=Phyra80441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 182675 183394 . - 0 ID=Phyra80441;Parent=Phyra80441;rank=2 scaffold_49 . exon 182675 183394 . - . ID=Phyra80441.2;Parent=Phyra80441;constitutive=1;rank=2 scaffold_49 . CDS 183497 183979 . - 0 ID=Phyra80441;Parent=Phyra80441;rank=1 scaffold_49 . exon 183497 183979 . - . ID=Phyra80441.1;Parent=Phyra80441;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 185078 186385 . - . ID=Phyra80442;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000048;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 185078 186385 . - . ID=Phyra80442;Parent=Phyra80442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 185078 186385 . - 0 ID=Phyra80442;Parent=Phyra80442;rank=1 scaffold_49 . exon 185078 186385 . - . ID=Phyra80442.1;Parent=Phyra80442;constitutive=1;rank=1 scaffold_49 . biological_region 191880 191883 0.999 - . logic_name=eponine scaffold_49 . biological_region 197070 197073 0.999 - . logic_name=eponine scaffold_49 ensembl protein_coding_gene 191530 194283 . + . ID=Phyra71802;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_49000010;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 191530 194283 . + . ID=Phyra71802;Parent=Phyra71802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 191530 194283 . + 0 ID=Phyra71802;Parent=Phyra71802;rank=1 scaffold_49 . exon 191530 194283 . + . ID=Phyra71802.1;Parent=Phyra71802;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 190132 191041 . - . ID=Phyra95717;biotype=protein_coding;external_name=C_scaffold_49000013;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 190132 191041 . - . ID=Phyra95717;Parent=Phyra95717;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 190132 190192 . - 0 ID=Phyra95717;Parent=Phyra95717;rank=3 scaffold_49 . exon 190132 190192 . - . ID=Phyra95717.3;Parent=Phyra95717;constitutive=1;ensembl_phase=2;rank=3 scaffold_49 . CDS 190260 190492 . - 0 ID=Phyra95717;Parent=Phyra95717;rank=2 scaffold_49 . exon 190260 190492 . - . ID=Phyra95717.2;Parent=Phyra95717;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_49 . CDS 190520 191041 . - 0 ID=Phyra95717;Parent=Phyra95717;rank=1 scaffold_49 . exon 190520 191041 . - . ID=Phyra95717.1;Parent=Phyra95717;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 194383 200022 . - . ID=Phyra95719;biotype=protein_coding;external_name=C_scaffold_49000015;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 194383 200022 . - . ID=Phyra95719;Parent=Phyra95719;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 194383 194844 . - 0 ID=Phyra95719;Parent=Phyra95719;rank=16 scaffold_49 . exon 194383 194844 . - . ID=Phyra95719.16;Parent=Phyra95719;constitutive=1;rank=16 scaffold_49 . CDS 194913 194975 . - 0 ID=Phyra95719;Parent=Phyra95719;rank=15 scaffold_49 . exon 194913 194975 . - . ID=Phyra95719.15;Parent=Phyra95719;constitutive=1;rank=15 scaffold_49 . CDS 195041 195094 . - 0 ID=Phyra95719;Parent=Phyra95719;rank=14 scaffold_49 . exon 195041 195094 . - . ID=Phyra95719.14;Parent=Phyra95719;constitutive=1;rank=14 scaffold_49 . CDS 195163 195243 . - 0 ID=Phyra95719;Parent=Phyra95719;rank=13 scaffold_49 . exon 195163 195243 . - . ID=Phyra95719.13;Parent=Phyra95719;constitutive=1;rank=13 scaffold_49 . CDS 195309 195404 . - 0 ID=Phyra95719;Parent=Phyra95719;rank=12 scaffold_49 . exon 195309 195404 . - . ID=Phyra95719.12;Parent=Phyra95719;constitutive=1;rank=12 scaffold_49 . CDS 195632 195659 . - 0 ID=Phyra95719;Parent=Phyra95719;rank=11 scaffold_49 . exon 195632 195659 . - . ID=Phyra95719.11;Parent=Phyra95719;constitutive=1;ensembl_phase=2;rank=11 scaffold_49 . CDS 195928 196094 . - 0 ID=Phyra95719;Parent=Phyra95719;rank=10 scaffold_49 . exon 195928 196094 . - . ID=Phyra95719.10;Parent=Phyra95719;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_49 . CDS 196217 196650 . - 0 ID=Phyra95719;Parent=Phyra95719;rank=9 scaffold_49 . exon 196217 196650 . - . ID=Phyra95719.9;Parent=Phyra95719;constitutive=1;ensembl_phase=1;rank=9 scaffold_49 . CDS 196685 196686 . - 0 ID=Phyra95719;Parent=Phyra95719;rank=8 scaffold_49 . exon 196685 196686 . - . ID=Phyra95719.8;Parent=Phyra95719;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_49 . CDS 196895 197387 . - 0 ID=Phyra95719;Parent=Phyra95719;rank=7 scaffold_49 . exon 196895 197387 . - . ID=Phyra95719.7;Parent=Phyra95719;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_49 . CDS 197459 197522 . - 0 ID=Phyra95719;Parent=Phyra95719;rank=6 scaffold_49 . exon 197459 197522 . - . ID=Phyra95719.6;Parent=Phyra95719;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_49 . CDS 197620 197994 . - 0 ID=Phyra95719;Parent=Phyra95719;rank=5 scaffold_49 . exon 197620 197994 . - . ID=Phyra95719.5;Parent=Phyra95719;constitutive=1;rank=5 scaffold_49 . CDS 198067 198304 . - 0 ID=Phyra95719;Parent=Phyra95719;rank=4 scaffold_49 . exon 198067 198304 . - . ID=Phyra95719.4;Parent=Phyra95719;constitutive=1;ensembl_phase=2;rank=4 scaffold_49 . CDS 198389 198556 . - 0 ID=Phyra95719;Parent=Phyra95719;rank=3 scaffold_49 . exon 198389 198556 . - . ID=Phyra95719.3;Parent=Phyra95719;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_49 . CDS 198599 199850 . - 0 ID=Phyra95719;Parent=Phyra95719;rank=2 scaffold_49 . exon 198599 199850 . - . ID=Phyra95719.2;Parent=Phyra95719;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_49 . CDS 199923 200022 . - 0 ID=Phyra95719;Parent=Phyra95719;rank=1 scaffold_49 . repeat_region 200465 200486 . ? . description=trf scaffold_49 . repeat_region 205999 206094 . ? . description=trf scaffold_49 . repeat_region 206003 206045 . ? . description=trf scaffold_49 . repeat_region 206155 206190 . ? . description=trf scaffold_49 . repeat_region 206536 206543 . ? . description=dust scaffold_49 ensembl protein_coding_gene 201676 203082 . - . ID=Phyra49653;biotype=protein_coding;external_name=gwEuk.49.1.1;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 201676 203082 . - . ID=Phyra49653;Parent=Phyra49653;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 201676 201898 . - 0 ID=Phyra49653;Parent=Phyra49653;rank=4 scaffold_49 . exon 201676 201898 . - . ID=Phyra49653.4;Parent=Phyra49653;constitutive=1;ensembl_phase=2;rank=4 scaffold_49 . CDS 201991 202461 . - 0 ID=Phyra49653;Parent=Phyra49653;rank=3 scaffold_49 . exon 201991 202461 . - . ID=Phyra49653.3;Parent=Phyra49653;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_49 . CDS 202546 202839 . - 0 ID=Phyra49653;Parent=Phyra49653;rank=2 scaffold_49 . exon 202546 202839 . - . ID=Phyra49653.2;Parent=Phyra49653;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_49 . CDS 202910 203082 . - 0 ID=Phyra49653;Parent=Phyra49653;rank=1 scaffold_49 . exon 202910 203082 . - . ID=Phyra49653.1;Parent=Phyra49653;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 ensembl protein_coding_gene 205897 206472 . - . ID=Phyra71803;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_49000011;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 205897 206472 . - . ID=Phyra71803;Parent=Phyra71803;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 205897 206472 . - 0 ID=Phyra71803;Parent=Phyra71803;rank=1 scaffold_49 . exon 205897 206472 . - . ID=Phyra71803.1;Parent=Phyra71803;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 208225 209567 . + . ID=Phyra71804;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_49000012;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 208225 209567 . + . ID=Phyra71804;Parent=Phyra71804;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 208225 208356 . + 0 ID=Phyra71804;Parent=Phyra71804;rank=1 scaffold_49 . exon 208225 208356 . + . ID=Phyra71804.1;Parent=Phyra71804;constitutive=1;rank=1 scaffold_49 . CDS 208416 209567 . + 0 ID=Phyra71804;Parent=Phyra71804;rank=2 scaffold_49 . exon 208416 209567 . + . ID=Phyra71804.2;Parent=Phyra71804;constitutive=1;rank=2 scaffold_49 ensembl protein_coding_gene 203538 205760 . + . ID=Phyra80449;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000055;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 203538 205760 . + . ID=Phyra80449;Parent=Phyra80449;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 203538 203548 . + 0 ID=Phyra80449;Parent=Phyra80449;rank=1 scaffold_49 . exon 203538 203548 . + . ID=Phyra80449.1;Parent=Phyra80449;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . CDS 203632 204055 . + 0 ID=Phyra80449;Parent=Phyra80449;rank=2 scaffold_49 . exon 203632 204055 . + . ID=Phyra80449.2;Parent=Phyra80449;constitutive=1;ensembl_phase=2;rank=2 scaffold_49 . CDS 204121 204300 . + 0 ID=Phyra80449;Parent=Phyra80449;rank=3 scaffold_49 . exon 204121 204300 . + . ID=Phyra80449.3;Parent=Phyra80449;constitutive=1;rank=3 scaffold_49 . CDS 204372 205760 . + 0 ID=Phyra80449;Parent=Phyra80449;rank=4 scaffold_49 . exon 204372 205760 . + . ID=Phyra80449.4;Parent=Phyra80449;constitutive=1;rank=4 scaffold_49 . exon 199923 200022 . - . ID=Phyra95719.1;Parent=Phyra95719;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . biological_region 208771 208773 0.999 - . logic_name=eponine scaffold_49 . biological_region 211318 211323 0.999 + . logic_name=eponine scaffold_49 . biological_region 214002 214007 0.999 + . logic_name=eponine scaffold_49 ensembl protein_coding_gene 212292 213188 . - . ID=Phyra80452;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000058;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 212292 213188 . - . ID=Phyra80452;Parent=Phyra80452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 212292 213188 . - 0 ID=Phyra80452;Parent=Phyra80452;rank=1 scaffold_49 . exon 212292 213188 . - . ID=Phyra80452.1;Parent=Phyra80452;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 213606 215644 . + . ID=Phyra80453;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000059;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 213606 215644 . + . ID=Phyra80453;Parent=Phyra80453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 213606 214701 . + 0 ID=Phyra80453;Parent=Phyra80453;rank=1 scaffold_49 . exon 213606 214701 . + . ID=Phyra80453.1;Parent=Phyra80453;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . CDS 214734 215644 . + 0 ID=Phyra80453;Parent=Phyra80453;rank=2 scaffold_49 . exon 214734 215644 . + . ID=Phyra80453.2;Parent=Phyra80453;constitutive=1;ensembl_phase=1;rank=2 scaffold_49 ensembl protein_coding_gene 216028 216780 . - . ID=Phyra80454;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000060;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 216028 216780 . - . ID=Phyra80454;Parent=Phyra80454;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 216028 216780 . - 0 ID=Phyra80454;Parent=Phyra80454;rank=1 scaffold_49 . exon 216028 216780 . - . ID=Phyra80454.1;Parent=Phyra80454;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 217727 218122 . + . ID=Phyra80455;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000061;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 217727 218122 . + . ID=Phyra80455;Parent=Phyra80455;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 217727 218122 . + 0 ID=Phyra80455;Parent=Phyra80455;rank=1 scaffold_49 . exon 217727 218122 . + . ID=Phyra80455.1;Parent=Phyra80455;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 225005 226345 . + . ID=Phyra49663;biotype=protein_coding;external_name=gwEuk.49.11.1;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 225005 226345 . + . ID=Phyra49663;Parent=Phyra49663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 225005 226345 . + 0 ID=Phyra49663;Parent=Phyra49663;rank=1 scaffold_49 . exon 225005 226345 . + . ID=Phyra49663.1;Parent=Phyra49663;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 218591 219804 . - . ID=Phyra80456;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000062;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 218591 219804 . - . ID=Phyra80456;Parent=Phyra80456;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 218591 218714 . - 0 ID=Phyra80456;Parent=Phyra80456;rank=3 scaffold_49 . exon 218591 218714 . - . ID=Phyra80456.3;Parent=Phyra80456;constitutive=1;ensembl_phase=2;rank=3 scaffold_49 . CDS 219079 219718 . - 0 ID=Phyra80456;Parent=Phyra80456;rank=2 scaffold_49 . exon 219079 219718 . - . ID=Phyra80456.2;Parent=Phyra80456;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_49 . CDS 219789 219804 . - 0 ID=Phyra80456;Parent=Phyra80456;rank=1 scaffold_49 . exon 219789 219804 . - . ID=Phyra80456.1;Parent=Phyra80456;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 ensembl protein_coding_gene 220616 222688 . - . ID=Phyra80457;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000063;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 220616 222688 . - . ID=Phyra80457;Parent=Phyra80457;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 220616 221541 . - 0 ID=Phyra80457;Parent=Phyra80457;rank=6 scaffold_49 . exon 220616 221541 . - . ID=Phyra80457.6;Parent=Phyra80457;constitutive=1;ensembl_phase=1;rank=6 scaffold_49 . CDS 221614 221799 . - 0 ID=Phyra80457;Parent=Phyra80457;rank=5 scaffold_49 . exon 221614 221799 . - . ID=Phyra80457.5;Parent=Phyra80457;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_49 . CDS 221873 221988 . - 0 ID=Phyra80457;Parent=Phyra80457;rank=4 scaffold_49 . exon 221873 221988 . - . ID=Phyra80457.4;Parent=Phyra80457;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_49 . CDS 222062 222256 . - 0 ID=Phyra80457;Parent=Phyra80457;rank=3 scaffold_49 . exon 222062 222256 . - . ID=Phyra80457.3;Parent=Phyra80457;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_49 . CDS 222341 222494 . - 0 ID=Phyra80457;Parent=Phyra80457;rank=2 scaffold_49 . exon 222341 222494 . - . ID=Phyra80457.2;Parent=Phyra80457;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_49 . CDS 222598 222688 . - 0 ID=Phyra80457;Parent=Phyra80457;rank=1 scaffold_49 . exon 222598 222688 . - . ID=Phyra80457.1;Parent=Phyra80457;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 ensembl protein_coding_gene 223484 224214 . - . ID=Phyra80458;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000064;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 223484 224214 . - . ID=Phyra80458;Parent=Phyra80458;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 223484 223609 . - 0 ID=Phyra80458;Parent=Phyra80458;rank=2 scaffold_49 . exon 223484 223609 . - . ID=Phyra80458.2;Parent=Phyra80458;constitutive=1;rank=2 scaffold_49 . CDS 223651 224214 . - 0 ID=Phyra80458;Parent=Phyra80458;rank=1 scaffold_49 . exon 223651 224214 . - . ID=Phyra80458.1;Parent=Phyra80458;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 228082 231066 . - . ID=Phyra80460;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000066;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 228082 231066 . - . ID=Phyra80460;Parent=Phyra80460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 228082 231066 . - 0 ID=Phyra80460;Parent=Phyra80460;rank=1 scaffold_49 . exon 228082 231066 . - . ID=Phyra80460.1;Parent=Phyra80460;constitutive=1;rank=1 scaffold_49 . biological_region 229158 229158 0.999 + . logic_name=eponine scaffold_49 . biological_region 230275 230280 0.999 - . logic_name=eponine scaffold_49 ensembl protein_coding_gene 231213 232459 . + . ID=Phyra80461;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000067;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 231213 232459 . + . ID=Phyra80461;Parent=Phyra80461;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 231213 231550 . + 0 ID=Phyra80461;Parent=Phyra80461;rank=1 scaffold_49 . exon 231213 231550 . + . ID=Phyra80461.1;Parent=Phyra80461;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . CDS 231608 231694 . + 0 ID=Phyra80461;Parent=Phyra80461;rank=2 scaffold_49 . exon 231608 231694 . + . ID=Phyra80461.2;Parent=Phyra80461;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_49 . CDS 231760 231870 . + 0 ID=Phyra80461;Parent=Phyra80461;rank=3 scaffold_49 . exon 231760 231870 . + . ID=Phyra80461.3;Parent=Phyra80461;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_49 . CDS 231923 232023 . + 0 ID=Phyra80461;Parent=Phyra80461;rank=4 scaffold_49 . exon 231923 232023 . + . ID=Phyra80461.4;Parent=Phyra80461;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_49 . CDS 232098 232459 . + 0 ID=Phyra80461;Parent=Phyra80461;rank=5 scaffold_49 . exon 232098 232459 . + . ID=Phyra80461.5;Parent=Phyra80461;constitutive=1;ensembl_phase=1;rank=5 scaffold_49 ensembl protein_coding_gene 233162 233672 . - . ID=Phyra95722;biotype=protein_coding;external_name=C_scaffold_49000018;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 233162 233672 . - . ID=Phyra95722;Parent=Phyra95722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 233162 233173 . - 0 ID=Phyra95722;Parent=Phyra95722;rank=3 scaffold_49 . exon 233162 233173 . - . ID=Phyra95722.3;Parent=Phyra95722;constitutive=1;rank=3 scaffold_49 . CDS 233232 233339 . - 0 ID=Phyra95722;Parent=Phyra95722;rank=2 scaffold_49 . exon 233232 233339 . - . ID=Phyra95722.2;Parent=Phyra95722;constitutive=1;rank=2 scaffold_49 . CDS 233361 233672 . - 0 ID=Phyra95722;Parent=Phyra95722;rank=1 scaffold_49 . exon 233361 233672 . - . ID=Phyra95722.1;Parent=Phyra95722;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 237370 238247 . + . ID=Phyra95723;biotype=protein_coding;external_name=C_scaffold_49000019;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 237370 238247 . + . ID=Phyra95723;Parent=Phyra95723;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 237370 237432 . + 0 ID=Phyra95723;Parent=Phyra95723;rank=1 scaffold_49 . exon 237370 237432 . + . ID=Phyra95723.1;Parent=Phyra95723;constitutive=1;rank=1 scaffold_49 . CDS 237493 237564 . + 0 ID=Phyra95723;Parent=Phyra95723;rank=2 scaffold_49 . exon 237493 237564 . + . ID=Phyra95723.2;Parent=Phyra95723;constitutive=1;rank=2 scaffold_49 . CDS 237586 237993 . + 0 ID=Phyra95723;Parent=Phyra95723;rank=3 scaffold_49 . exon 237586 237993 . + . ID=Phyra95723.3;Parent=Phyra95723;constitutive=1;rank=3 scaffold_49 . CDS 238039 238180 . + 0 ID=Phyra95723;Parent=Phyra95723;rank=4 scaffold_49 . exon 238039 238180 . + . ID=Phyra95723.4;Parent=Phyra95723;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_49 . CDS 238240 238247 . + 0 ID=Phyra95723;Parent=Phyra95723;rank=5 scaffold_49 . exon 238240 238247 . + . ID=Phyra95723.5;Parent=Phyra95723;constitutive=1;ensembl_phase=1;rank=5 scaffold_49 ensembl protein_coding_gene 238285 239509 . - . ID=Phyra95724;biotype=protein_coding;external_name=C_scaffold_49000020;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 238285 239509 . - . ID=Phyra95724;Parent=Phyra95724;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 238285 238304 . - 0 ID=Phyra95724;Parent=Phyra95724;rank=4 scaffold_49 . exon 238285 238304 . - . ID=Phyra95724.4;Parent=Phyra95724;constitutive=1;ensembl_phase=1;rank=4 scaffold_49 . CDS 238334 238941 . - 0 ID=Phyra95724;Parent=Phyra95724;rank=3 scaffold_49 . exon 238334 238941 . - . ID=Phyra95724.3;Parent=Phyra95724;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_49 . CDS 239010 239112 . - 0 ID=Phyra95724;Parent=Phyra95724;rank=2 scaffold_49 . CDS 239374 239509 . - 0 ID=Phyra95724;Parent=Phyra95724;rank=1 scaffold_49 ensembl protein_coding_gene 241735 244155 . - . ID=Phyra49673;biotype=protein_coding;external_name=gwEuk.49.21.1;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 241735 244155 . - . ID=Phyra49673;Parent=Phyra49673;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 241735 241971 . - 0 ID=Phyra49673;Parent=Phyra49673;rank=5 scaffold_49 . exon 241735 241971 . - . ID=Phyra49673.5;Parent=Phyra49673;constitutive=1;rank=5 scaffold_49 . CDS 242035 242242 . - 0 ID=Phyra49673;Parent=Phyra49673;rank=4 scaffold_49 . exon 242035 242242 . - . ID=Phyra49673.4;Parent=Phyra49673;constitutive=1;ensembl_phase=2;rank=4 scaffold_49 . CDS 242313 242385 . - 0 ID=Phyra49673;Parent=Phyra49673;rank=3 scaffold_49 . exon 242313 242385 . - . ID=Phyra49673.3;Parent=Phyra49673;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_49 . CDS 243818 243999 . - 0 ID=Phyra49673;Parent=Phyra49673;rank=2 scaffold_49 . exon 243818 243999 . - . ID=Phyra49673.2;Parent=Phyra49673;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_49 . CDS 244067 244155 . - 0 ID=Phyra49673;Parent=Phyra49673;rank=1 scaffold_49 . exon 244067 244155 . - . ID=Phyra49673.1;Parent=Phyra49673;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 ensembl protein_coding_gene 240314 241336 . + . ID=Phyra80463;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000069;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 240314 241336 . + . ID=Phyra80463;Parent=Phyra80463;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 240314 240353 . + 0 ID=Phyra80463;Parent=Phyra80463;rank=1 scaffold_49 . exon 240314 240353 . + . ID=Phyra80463.1;Parent=Phyra80463;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . CDS 240462 241336 . + 0 ID=Phyra80463;Parent=Phyra80463;rank=2 scaffold_49 . exon 240462 241336 . + . ID=Phyra80463.2;Parent=Phyra80463;constitutive=1;ensembl_phase=1;rank=2 scaffold_49 ensembl protein_coding_gene 244615 245847 . - . ID=Phyra80466;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000072;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 244615 245847 . - . ID=Phyra80466;Parent=Phyra80466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 244615 245847 . - 0 ID=Phyra80466;Parent=Phyra80466;rank=1 scaffold_49 . exon 244615 245847 . - . ID=Phyra80466.1;Parent=Phyra80466;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 246921 247814 . + . ID=Phyra80467;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000073;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 246921 247814 . + . ID=Phyra80467;Parent=Phyra80467;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 246921 247102 . + 0 ID=Phyra80467;Parent=Phyra80467;rank=1 scaffold_49 . exon 246921 247102 . + . ID=Phyra80467.1;Parent=Phyra80467;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . CDS 247177 247222 . + 0 ID=Phyra80467;Parent=Phyra80467;rank=2 scaffold_49 . exon 247177 247222 . + . ID=Phyra80467.2;Parent=Phyra80467;constitutive=1;ensembl_phase=2;rank=2 scaffold_49 . CDS 247297 247571 . + 0 ID=Phyra80467;Parent=Phyra80467;rank=3 scaffold_49 . exon 247297 247571 . + . ID=Phyra80467.3;Parent=Phyra80467;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_49 . CDS 247673 247814 . + 0 ID=Phyra80467;Parent=Phyra80467;rank=4 scaffold_49 . exon 247673 247814 . + . ID=Phyra80467.4;Parent=Phyra80467;constitutive=1;ensembl_phase=2;rank=4 scaffold_49 ensembl protein_coding_gene 248091 250382 . - . ID=Phyra80468;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000074;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 248091 250382 . - . ID=Phyra80468;Parent=Phyra80468;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 248091 250382 . - 0 ID=Phyra80468;Parent=Phyra80468;rank=1 scaffold_49 . exon 248091 250382 . - . ID=Phyra80468.1;Parent=Phyra80468;constitutive=1;rank=1 scaffold_49 . exon 239010 239112 . - . ID=Phyra95724.2;Parent=Phyra95724;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_49 . exon 239374 239509 . - . ID=Phyra95724.1;Parent=Phyra95724;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . biological_region 250378 250381 0.999 - . logic_name=eponine scaffold_49 . biological_region 256662 256664 0.999 - . logic_name=eponine scaffold_49 . biological_region 256680 256684 0.999 + . logic_name=eponine scaffold_49 . biological_region 256684 256686 0.999 - . logic_name=eponine scaffold_49 . biological_region 256704 256706 0.999 + . logic_name=eponine scaffold_49 . repeat_region 257244 257252 . ? . description=dust scaffold_49 . biological_region 258053 258054 0.999 - . logic_name=eponine scaffold_49 ensembl protein_coding_gene 252379 254233 . - . ID=Phyra80469;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000075;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 252379 254233 . - . ID=Phyra80469;Parent=Phyra80469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 252379 252493 . - 0 ID=Phyra80469;Parent=Phyra80469;rank=6 scaffold_49 . exon 252379 252493 . - . ID=Phyra80469.6;Parent=Phyra80469;constitutive=1;ensembl_phase=2;rank=6 scaffold_49 . CDS 252593 252904 . - 0 ID=Phyra80469;Parent=Phyra80469;rank=5 scaffold_49 . exon 252593 252904 . - . ID=Phyra80469.5;Parent=Phyra80469;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_49 . CDS 253112 253203 . - 0 ID=Phyra80469;Parent=Phyra80469;rank=4 scaffold_49 . exon 253112 253203 . - . ID=Phyra80469.4;Parent=Phyra80469;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_49 . CDS 253279 253383 . - 0 ID=Phyra80469;Parent=Phyra80469;rank=3 scaffold_49 . exon 253279 253383 . - . ID=Phyra80469.3;Parent=Phyra80469;constitutive=1;rank=3 scaffold_49 . CDS 253480 253989 . - 0 ID=Phyra80469;Parent=Phyra80469;rank=2 scaffold_49 . exon 253480 253989 . - . ID=Phyra80469.2;Parent=Phyra80469;constitutive=1;rank=2 scaffold_49 . CDS 254162 254233 . - 0 ID=Phyra80469;Parent=Phyra80469;rank=1 scaffold_49 . exon 254162 254233 . - . ID=Phyra80469.1;Parent=Phyra80469;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 250572 252043 . + . ID=Phyra95727;biotype=protein_coding;external_name=C_scaffold_49000023;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 250572 252043 . + . ID=Phyra95727;Parent=Phyra95727;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 250572 250644 . + 0 ID=Phyra95727;Parent=Phyra95727;rank=1 scaffold_49 . exon 250572 250644 . + . ID=Phyra95727.1;Parent=Phyra95727;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . CDS 250709 251157 . + 0 ID=Phyra95727;Parent=Phyra95727;rank=2 scaffold_49 . exon 250709 251157 . + . ID=Phyra95727.2;Parent=Phyra95727;constitutive=1;ensembl_phase=1;rank=2 scaffold_49 . CDS 251241 251335 . + 0 ID=Phyra95727;Parent=Phyra95727;rank=3 scaffold_49 . exon 251241 251335 . + . ID=Phyra95727.3;Parent=Phyra95727;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_49 . CDS 251404 251465 . + 0 ID=Phyra95727;Parent=Phyra95727;rank=4 scaffold_49 . exon 251404 251465 . + . ID=Phyra95727.4;Parent=Phyra95727;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_49 . CDS 251538 251590 . + 0 ID=Phyra95727;Parent=Phyra95727;rank=5 scaffold_49 . exon 251538 251590 . + . ID=Phyra95727.5;Parent=Phyra95727;constitutive=1;ensembl_phase=1;rank=5 scaffold_49 . CDS 251663 251715 . + 0 ID=Phyra95727;Parent=Phyra95727;rank=6 scaffold_49 . exon 251663 251715 . + . ID=Phyra95727.6;Parent=Phyra95727;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_49 . CDS 251793 251864 . + 0 ID=Phyra95727;Parent=Phyra95727;rank=7 scaffold_49 . exon 251793 251864 . + . ID=Phyra95727.7;Parent=Phyra95727;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_49 . CDS 251938 252043 . + 0 ID=Phyra95727;Parent=Phyra95727;rank=8 scaffold_49 . exon 251938 252043 . + . ID=Phyra95727.8;Parent=Phyra95727;constitutive=1;ensembl_phase=2;rank=8 scaffold_49 . repeat_region 264689 264790 . ? . description=trf scaffold_49 ensembl protein_coding_gene 259781 260251 . - . ID=Phyra80470;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000076;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 259781 260251 . - . ID=Phyra80470;Parent=Phyra80470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 259781 260251 . - 0 ID=Phyra80470;Parent=Phyra80470;rank=1 scaffold_49 . exon 259781 260251 . - . ID=Phyra80470.1;Parent=Phyra80470;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 267552 271827 . - . ID=Phyra80472;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000078;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 267552 271827 . - . ID=Phyra80472;Parent=Phyra80472;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 267552 271352 . - 0 ID=Phyra80472;Parent=Phyra80472;rank=2 scaffold_49 . exon 267552 271352 . - . ID=Phyra80472.2;Parent=Phyra80472;constitutive=1;rank=2 scaffold_49 . CDS 271432 271827 . - 0 ID=Phyra80472;Parent=Phyra80472;rank=1 scaffold_49 ensembl protein_coding_gene 267020 267394 . + . ID=Phyra95729;biotype=protein_coding;external_name=C_scaffold_49000025;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 267020 267394 . + . ID=Phyra95729;Parent=Phyra95729;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 267020 267394 . + 0 ID=Phyra95729;Parent=Phyra95729;rank=1 scaffold_49 . exon 267020 267394 . + . ID=Phyra95729.1;Parent=Phyra95729;constitutive=1;rank=1 scaffold_49 . biological_region 268396 268400 0.999 + . logic_name=eponine scaffold_49 . biological_region 276381 276385 0.999 - . logic_name=eponine scaffold_49 . exon 271432 271827 . - . ID=Phyra80472.1;Parent=Phyra80472;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 272068 273389 . + . ID=Phyra80473;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000079;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 272068 273389 . + . ID=Phyra80473;Parent=Phyra80473;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 272068 272290 . + 0 ID=Phyra80473;Parent=Phyra80473;rank=1 scaffold_49 . exon 272068 272290 . + . ID=Phyra80473.1;Parent=Phyra80473;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . CDS 272349 272562 . + 0 ID=Phyra80473;Parent=Phyra80473;rank=2 scaffold_49 . exon 272349 272562 . + . ID=Phyra80473.2;Parent=Phyra80473;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_49 . CDS 272629 273223 . + 0 ID=Phyra80473;Parent=Phyra80473;rank=3 scaffold_49 . exon 272629 273223 . + . ID=Phyra80473.3;Parent=Phyra80473;constitutive=1;ensembl_phase=2;rank=3 scaffold_49 . CDS 273288 273389 . + 0 ID=Phyra80473;Parent=Phyra80473;rank=4 scaffold_49 . exon 273288 273389 . + . ID=Phyra80473.4;Parent=Phyra80473;constitutive=1;rank=4 scaffold_49 ensembl protein_coding_gene 273566 277873 . - . ID=Phyra80474;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000080;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 273566 277873 . - . ID=Phyra80474;Parent=Phyra80474;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 273566 277873 . - 0 ID=Phyra80474;Parent=Phyra80474;rank=1 scaffold_49 . exon 273566 277873 . - . ID=Phyra80474.1;Parent=Phyra80474;constitutive=1;rank=1 scaffold_49 . repeat_region 278765 278865 . ? . description=trf scaffold_49 . repeat_region 280960 280967 . ? . description=dust scaffold_49 . repeat_region 282133 282182 . ? . description=trf scaffold_49 . repeat_region 285324 285344 . ? . description=dust scaffold_49 ensembl protein_coding_gene 278332 279498 . - . ID=Phyra80475;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000081;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 278332 279498 . - . ID=Phyra80475;Parent=Phyra80475;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 278332 279498 . - 0 ID=Phyra80475;Parent=Phyra80475;rank=1 scaffold_49 . exon 278332 279498 . - . ID=Phyra80475.1;Parent=Phyra80475;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 286060 287670 . - . ID=Phyra80479;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000085;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 286060 287670 . - . ID=Phyra80479;Parent=Phyra80479;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 286060 287670 . - 0 ID=Phyra80479;Parent=Phyra80479;rank=1 scaffold_49 . exon 286060 287670 . - . ID=Phyra80479.1;Parent=Phyra80479;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 287850 289836 . + . ID=Phyra80480;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000086;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 287850 289836 . + . ID=Phyra80480;Parent=Phyra80480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 287850 288023 . + 0 ID=Phyra80480;Parent=Phyra80480;rank=1 scaffold_49 . exon 287850 288023 . + . ID=Phyra80480.1;Parent=Phyra80480;constitutive=1;rank=1 scaffold_49 . CDS 288092 288172 . + 0 ID=Phyra80480;Parent=Phyra80480;rank=2 scaffold_49 . CDS 288246 288329 . + 0 ID=Phyra80480;Parent=Phyra80480;rank=3 scaffold_49 . CDS 288397 289836 . + 0 ID=Phyra80480;Parent=Phyra80480;rank=4 scaffold_49 ensembl protein_coding_gene 281728 285794 . + . ID=Phyra95732;biotype=protein_coding;external_name=C_scaffold_49000028;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 281728 285794 . + . ID=Phyra95732;Parent=Phyra95732;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 281728 282082 . + 0 ID=Phyra95732;Parent=Phyra95732;rank=1 scaffold_49 . exon 281728 282082 . + . ID=Phyra95732.1;Parent=Phyra95732;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . CDS 282200 282272 . + 0 ID=Phyra95732;Parent=Phyra95732;rank=2 scaffold_49 . exon 282200 282272 . + . ID=Phyra95732.2;Parent=Phyra95732;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_49 . CDS 282873 283354 . + 0 ID=Phyra95732;Parent=Phyra95732;rank=3 scaffold_49 . exon 282873 283354 . + . ID=Phyra95732.3;Parent=Phyra95732;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_49 . CDS 283460 283579 . + 0 ID=Phyra95732;Parent=Phyra95732;rank=4 scaffold_49 . exon 283460 283579 . + . ID=Phyra95732.4;Parent=Phyra95732;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_49 . CDS 284232 284579 . + 0 ID=Phyra95732;Parent=Phyra95732;rank=5 scaffold_49 . exon 284232 284579 . + . ID=Phyra95732.5;Parent=Phyra95732;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_49 . CDS 284626 284725 . + 0 ID=Phyra95732;Parent=Phyra95732;rank=6 scaffold_49 . exon 284626 284725 . + . ID=Phyra95732.6;Parent=Phyra95732;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_49 . CDS 284798 285224 . + 0 ID=Phyra95732;Parent=Phyra95732;rank=7 scaffold_49 . exon 284798 285224 . + . ID=Phyra95732.7;Parent=Phyra95732;constitutive=1;ensembl_phase=2;rank=7 scaffold_49 . CDS 285264 285794 . + 0 ID=Phyra95732;Parent=Phyra95732;rank=8 scaffold_49 . exon 285264 285794 . + . ID=Phyra95732.8;Parent=Phyra95732;constitutive=1;rank=8 scaffold_49 . biological_region 292275 292278 0.999 - . logic_name=eponine scaffold_49 . biological_region 292297 292300 0.999 - . logic_name=eponine scaffold_49 . biological_region 292345 292346 0.999 - . logic_name=eponine scaffold_49 . biological_region 293172 293173 0.999 + . logic_name=eponine scaffold_49 . biological_region 293255 293256 0.999 - . logic_name=eponine scaffold_49 . biological_region 294564 294567 0.999 - . logic_name=eponine scaffold_49 . biological_region 297762 297768 0.999 - . logic_name=eponine scaffold_49 . biological_region 297820 297822 0.999 + . logic_name=eponine scaffold_49 . exon 288092 288172 . + . ID=Phyra80480.2;Parent=Phyra80480;constitutive=1;rank=2 scaffold_49 . exon 288246 288329 . + . ID=Phyra80480.3;Parent=Phyra80480;constitutive=1;rank=3 scaffold_49 . exon 288397 289836 . + . ID=Phyra80480.4;Parent=Phyra80480;constitutive=1;rank=4 scaffold_49 ensembl protein_coding_gene 290204 293574 . + . ID=Phyra80481;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000087;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 290204 293574 . + . ID=Phyra80481;Parent=Phyra80481;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 290204 291861 . + 0 ID=Phyra80481;Parent=Phyra80481;rank=1 scaffold_49 . exon 290204 291861 . + . ID=Phyra80481.1;Parent=Phyra80481;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . CDS 292176 293574 . + 0 ID=Phyra80481;Parent=Phyra80481;rank=2 scaffold_49 . exon 292176 293574 . + . ID=Phyra80481.2;Parent=Phyra80481;constitutive=1;ensembl_phase=2;rank=2 scaffold_49 ensembl protein_coding_gene 294150 295274 . + . ID=Phyra80482;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000088;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 294150 295274 . + . ID=Phyra80482;Parent=Phyra80482;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 294150 295274 . + 0 ID=Phyra80482;Parent=Phyra80482;rank=1 scaffold_49 . exon 294150 295274 . + . ID=Phyra80482.1;Parent=Phyra80482;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 297335 297718 . - . ID=Phyra95736;biotype=protein_coding;external_name=C_scaffold_49000032;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 297335 297718 . - . ID=Phyra95736;Parent=Phyra95736;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 297335 297718 . - 0 ID=Phyra95736;Parent=Phyra95736;rank=1 scaffold_49 . exon 297335 297718 . - . ID=Phyra95736.1;Parent=Phyra95736;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 301161 302339 . - . ID=Phyra49709;biotype=protein_coding;external_name=gwEuk.49.57.1;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 301161 302339 . - . ID=Phyra49709;Parent=Phyra49709;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 301161 302339 . - 0 ID=Phyra49709;Parent=Phyra49709;rank=1 scaffold_49 . exon 301161 302339 . - . ID=Phyra49709.1;Parent=Phyra49709;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 306046 306722 . - . ID=Phyra71806;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_49000014;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 306046 306722 . - . ID=Phyra71806;Parent=Phyra71806;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 306046 306181 . - 0 ID=Phyra71806;Parent=Phyra71806;rank=3 scaffold_49 . exon 306046 306181 . - . ID=Phyra71806.3;Parent=Phyra71806;constitutive=1;ensembl_phase=2;rank=3 scaffold_49 . CDS 306377 306390 . - 0 ID=Phyra71806;Parent=Phyra71806;rank=2 scaffold_49 . exon 306377 306390 . - . ID=Phyra71806.2;Parent=Phyra71806;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_49 . CDS 306465 306722 . - 0 ID=Phyra71806;Parent=Phyra71806;rank=1 scaffold_49 . exon 306465 306722 . - . ID=Phyra71806.1;Parent=Phyra71806;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 303470 305829 . - . ID=Phyra80486;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000092;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 303470 305829 . - . ID=Phyra80486;Parent=Phyra80486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 303470 303512 . - 0 ID=Phyra80486;Parent=Phyra80486;rank=6 scaffold_49 . exon 303470 303512 . - . ID=Phyra80486.6;Parent=Phyra80486;constitutive=1;ensembl_phase=2;rank=6 scaffold_49 . CDS 303610 303882 . - 0 ID=Phyra80486;Parent=Phyra80486;rank=5 scaffold_49 . exon 303610 303882 . - . ID=Phyra80486.5;Parent=Phyra80486;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_49 . CDS 303955 304696 . - 0 ID=Phyra80486;Parent=Phyra80486;rank=4 scaffold_49 . exon 303955 304696 . - . ID=Phyra80486.4;Parent=Phyra80486;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_49 . CDS 304783 305185 . - 0 ID=Phyra80486;Parent=Phyra80486;rank=3 scaffold_49 . exon 304783 305185 . - . ID=Phyra80486.3;Parent=Phyra80486;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_49 . CDS 305247 305375 . - 0 ID=Phyra80486;Parent=Phyra80486;rank=2 scaffold_49 . exon 305247 305375 . - . ID=Phyra80486.2;Parent=Phyra80486;constitutive=1;rank=2 scaffold_49 . CDS 305452 305829 . - 0 ID=Phyra80486;Parent=Phyra80486;rank=1 scaffold_49 . exon 305452 305829 . - . ID=Phyra80486.1;Parent=Phyra80486;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 298531 300428 . + . ID=Phyra95737;biotype=protein_coding;external_name=C_scaffold_49000033;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 298531 300428 . + . ID=Phyra95737;Parent=Phyra95737;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 298531 299012 . + 0 ID=Phyra95737;Parent=Phyra95737;rank=1 scaffold_49 . exon 298531 299012 . + . ID=Phyra95737.1;Parent=Phyra95737;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . CDS 299034 300293 . + 0 ID=Phyra95737;Parent=Phyra95737;rank=2 scaffold_49 . exon 299034 300293 . + . ID=Phyra95737.2;Parent=Phyra95737;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_49 . CDS 300374 300428 . + 0 ID=Phyra95737;Parent=Phyra95737;rank=3 scaffold_49 . exon 300374 300428 . + . ID=Phyra95737.3;Parent=Phyra95737;constitutive=1;ensembl_phase=2;rank=3 scaffold_49 . biological_region 311664 311665 0.999 + . logic_name=eponine scaffold_49 . biological_region 312411 312413 0.999 - . logic_name=eponine scaffold_49 . repeat_region 312748 312755 . ? . description=dust scaffold_49 . biological_region 313094 313098 0.999 + . logic_name=eponine scaffold_49 . biological_region 313167 313167 0.999 - . logic_name=eponine scaffold_49 . biological_region 313421 313423 0.999 - . logic_name=eponine scaffold_49 . biological_region 313422 313423 0.999 + . logic_name=eponine scaffold_49 . biological_region 313541 313545 0.999 - . logic_name=eponine scaffold_49 . repeat_region 314385 314414 . ? . description=trf scaffold_49 . biological_region 317388 317389 0.999 + . logic_name=eponine scaffold_49 ensembl protein_coding_gene 308788 312537 . - . ID=Phyra80488;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000094;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 308788 312537 . - . ID=Phyra80488;Parent=Phyra80488;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 308788 310271 . - 0 ID=Phyra80488;Parent=Phyra80488;rank=2 scaffold_49 . exon 308788 310271 . - . ID=Phyra80488.2;Parent=Phyra80488;constitutive=1;ensembl_phase=1;rank=2 scaffold_49 . CDS 310509 312537 . - 0 ID=Phyra80488;Parent=Phyra80488;rank=1 scaffold_49 . exon 310509 312537 . - . ID=Phyra80488.1;Parent=Phyra80488;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 ensembl protein_coding_gene 312905 313534 . - . ID=Phyra80489;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000095;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 312905 313534 . - . ID=Phyra80489;Parent=Phyra80489;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 312905 313534 . - 0 ID=Phyra80489;Parent=Phyra80489;rank=1 scaffold_49 . exon 312905 313534 . - . ID=Phyra80489.1;Parent=Phyra80489;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 314583 315770 . - . ID=Phyra80490;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000096;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 314583 315770 . - . ID=Phyra80490;Parent=Phyra80490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 314583 315770 . - 0 ID=Phyra80490;Parent=Phyra80490;rank=1 scaffold_49 . exon 314583 315770 . - . ID=Phyra80490.1;Parent=Phyra80490;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 316475 317626 . - . ID=Phyra80491;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000097;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 316475 317626 . - . ID=Phyra80491;Parent=Phyra80491;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 316475 317626 . - 0 ID=Phyra80491;Parent=Phyra80491;rank=1 scaffold_49 . exon 316475 317626 . - . ID=Phyra80491.1;Parent=Phyra80491;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 318463 320638 . + . ID=Phyra80492;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_49000098;logic_name=jgi_phyra1 scaffold_49 ensembl transcript 318463 320638 . + . ID=Phyra80492;Parent=Phyra80492;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_49 . CDS 318463 319169 . + 0 ID=Phyra80492;Parent=Phyra80492;rank=1 scaffold_49 . exon 318463 319169 . + . ID=Phyra80492.1;Parent=Phyra80492;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . CDS 319234 319320 . + 0 ID=Phyra80492;Parent=Phyra80492;rank=2 scaffold_49 . exon 319234 319320 . + . ID=Phyra80492.2;Parent=Phyra80492;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_49 . CDS 319511 319607 . + 0 ID=Phyra80492;Parent=Phyra80492;rank=3 scaffold_49 . exon 319511 319607 . + . ID=Phyra80492.3;Parent=Phyra80492;constitutive=1;ensembl_phase=2;rank=3 scaffold_49 . CDS 319672 320238 . + 0 ID=Phyra80492;Parent=Phyra80492;rank=4 scaffold_49 . exon 319672 320238 . + . ID=Phyra80492.4;Parent=Phyra80492;constitutive=1;rank=4 scaffold_49 . CDS 320519 320638 . + 0 ID=Phyra80492;Parent=Phyra80492;rank=5 scaffold_49 . exon 320519 320638 . + . ID=Phyra80492.5;Parent=Phyra80492;constitutive=1;rank=5 scaffold_49 . repeat_region 327215 328475 . ? . description=dust scaffold_49 . repeat_region 329702 337274 . ? . description=dust scaffold_49 . repeat_region 337640 337697 . ? . description=trf scaffold_49 . biological_region 337660 337668 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_52 1 349176 scaffold_52 . repeat_region 2671 2819 . - . description=GypsyPi-1c_LTR scaffold_52 . repeat_region 2717 2724 . ? . description=dust scaffold_52 . biological_region 6543 6549 0.999 + . logic_name=eponine scaffold_52 . repeat_region 6603 6610 . ? . description=dust scaffold_52 ensembl tRNA_gene 8376 8440 . - . ID=EPrPRAG00000000008;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_52 ensembl transcript 8376 8440 . - . ID=EPrPRAT00000000008;Parent=EPrPRAG00000000008;biotype=tRNA;logic_name=ncrna_eg scaffold_52 ensembl tRNA_gene 18 89 . + . ID=EPrPRAG00000000041;biotype=tRNA;description=tRNA-Cys for anticodon GCA [Source:TRNASCAN_SE%3BAcc:tRNA-Cys];external_name=tRNA-Cys;logic_name=ncrna_eg scaffold_52 ensembl transcript 18 89 . + . ID=EPrPRAT00000000041;Parent=EPrPRAG00000000041;biotype=tRNA;logic_name=ncrna_eg scaffold_52 ensembl tRNA_gene 582 653 . + . ID=EPrPRAG00000000114;biotype=tRNA;description=tRNA-Cys for anticodon GCA [Source:TRNASCAN_SE%3BAcc:tRNA-Cys];external_name=tRNA-Cys;logic_name=ncrna_eg scaffold_52 ensembl transcript 582 653 . + . ID=EPrPRAT00000000114;Parent=EPrPRAG00000000114;biotype=tRNA;logic_name=ncrna_eg scaffold_52 . exon 8376 8440 . - . ID=EPrPRAE00000000008;Parent=EPrPRAT00000000008;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 . exon 18 89 . + . ID=EPrPRAE00000000041;Parent=EPrPRAT00000000041;constitutive=1;rank=1 scaffold_52 . exon 582 653 . + . ID=EPrPRAE00000000114;Parent=EPrPRAT00000000114;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 4495 4949 . - . ID=Phyra80730;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000001;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 4495 4949 . - . ID=Phyra80730;Parent=Phyra80730;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 4495 4802 . - 0 ID=Phyra80730;Parent=Phyra80730;rank=2 scaffold_52 . exon 4495 4802 . - . ID=Phyra80730.2;Parent=Phyra80730;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 4844 4949 . - 0 ID=Phyra80730;Parent=Phyra80730;rank=1 scaffold_52 . exon 4844 4949 . - . ID=Phyra80730.1;Parent=Phyra80730;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 ensembl protein_coding_gene 6658 7413 . + . ID=Phyra80731;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000002;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 6658 7413 . + . ID=Phyra80731;Parent=Phyra80731;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 6658 6807 . + 0 ID=Phyra80731;Parent=Phyra80731;rank=1 scaffold_52 . exon 6658 6807 . + . ID=Phyra80731.1;Parent=Phyra80731;constitutive=1;rank=1 scaffold_52 . CDS 6979 7413 . + 0 ID=Phyra80731;Parent=Phyra80731;rank=2 scaffold_52 . exon 6979 7413 . + . ID=Phyra80731.2;Parent=Phyra80731;constitutive=1;rank=2 scaffold_52 ensembl protein_coding_gene 9565 10608 . + . ID=Phyra80732;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000003;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 9565 10608 . + . ID=Phyra80732;Parent=Phyra80732;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 9565 10608 . + 0 ID=Phyra80732;Parent=Phyra80732;rank=1 scaffold_52 . exon 9565 10608 . + . ID=Phyra80732.1;Parent=Phyra80732;constitutive=1;rank=1 scaffold_52 . repeat_region 15248 15267 . ? . description=trf scaffold_52 ensembl snoRNA_gene 14211 14411 . - . ID=EPrPRAG00000000146;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_52 ensembl snoRNA 14211 14411 . - . ID=EPrPRAT00000000146;Parent=EPrPRAG00000000146;biotype=snoRNA;logic_name=ncrna_eg scaffold_52 . exon 14211 14411 . - . ID=EPrPRAE00000000146;Parent=EPrPRAT00000000146;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 11505 12407 . - . ID=Phyra80733;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000004;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 11505 12407 . - . ID=Phyra80733;Parent=Phyra80733;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 11505 12407 . - 0 ID=Phyra80733;Parent=Phyra80733;rank=1 scaffold_52 . exon 11505 12407 . - . ID=Phyra80733.1;Parent=Phyra80733;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 15168 16070 . + . ID=Phyra80734;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000005;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 15168 16070 . + . ID=Phyra80734;Parent=Phyra80734;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 15168 16070 . + 0 ID=Phyra80734;Parent=Phyra80734;rank=1 scaffold_52 . exon 15168 16070 . + . ID=Phyra80734.1;Parent=Phyra80734;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 17928 19133 . + . ID=Phyra80735;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000006;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 17928 19133 . + . ID=Phyra80735;Parent=Phyra80735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 17928 19133 . + 0 ID=Phyra80735;Parent=Phyra80735;rank=1 scaffold_52 . exon 17928 19133 . + . ID=Phyra80735.1;Parent=Phyra80735;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 19188 20816 . - . ID=Phyra80736;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000007;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 19188 20816 . - . ID=Phyra80736;Parent=Phyra80736;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 19188 19352 . - 0 ID=Phyra80736;Parent=Phyra80736;rank=3 scaffold_52 . exon 19188 19352 . - . ID=Phyra80736.3;Parent=Phyra80736;constitutive=1;rank=3 scaffold_52 . CDS 19428 19850 . - 0 ID=Phyra80736;Parent=Phyra80736;rank=2 scaffold_52 . exon 19428 19850 . - . ID=Phyra80736.2;Parent=Phyra80736;constitutive=1;rank=2 scaffold_52 . CDS 19947 20816 . - 0 ID=Phyra80736;Parent=Phyra80736;rank=1 scaffold_52 . exon 19947 20816 . - . ID=Phyra80736.1;Parent=Phyra80736;constitutive=1;rank=1 scaffold_52 . repeat_region 21595 22780 . ? . description=dust scaffold_52 . biological_region 23222 23225 0.999 - . logic_name=eponine scaffold_52 . repeat_region 23440 23450 . ? . description=dust scaffold_52 . repeat_region 24035 24044 . ? . description=dust scaffold_52 . repeat_region 24490 24539 . ? . description=dust scaffold_52 . biological_region 26153 26156 0.999 - . logic_name=eponine scaffold_52 . repeat_region 28320 28327 . ? . description=dust scaffold_52 ensembl pseudogene 26788 27063 . + . ID=Phyra50407;biotype=pseudogene;external_name=gwEuk.52.35.1;logic_name=jgi_phyra1 scaffold_52 ensembl pseudogene 26788 27063 . + . ID=Phyra50407;Parent=Phyra50407;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_52 . exon 26788 27063 . + . ID=Phyra50407.1;Parent=Phyra50407;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 21201 23256 . + . ID=Phyra80737;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000008;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 21201 23256 . + . ID=Phyra80737;Parent=Phyra80737;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 21201 21591 . + 0 ID=Phyra80737;Parent=Phyra80737;rank=1 scaffold_52 . exon 21201 21591 . + . ID=Phyra80737.1;Parent=Phyra80737;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . CDS 22820 23256 . + 0 ID=Phyra80737;Parent=Phyra80737;rank=2 scaffold_52 . exon 22820 23256 . + . ID=Phyra80737.2;Parent=Phyra80737;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 ensembl protein_coding_gene 29215 30432 . + . ID=Phyra80739;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000010;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 29215 30432 . + . ID=Phyra80739;Parent=Phyra80739;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 29215 30432 . + 0 ID=Phyra80739;Parent=Phyra80739;rank=1 scaffold_52 . exon 29215 30432 . + . ID=Phyra80739.1;Parent=Phyra80739;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 37443 38245 . + . ID=Phyra50418;biotype=protein_coding;external_name=gwEuk.52.46.1;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 37443 38245 . + . ID=Phyra50418;Parent=Phyra50418;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 37443 38106 . + 0 ID=Phyra50418;Parent=Phyra50418;rank=1 scaffold_52 . exon 37443 38106 . + . ID=Phyra50418.1;Parent=Phyra50418;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . CDS 38172 38245 . + 0 ID=Phyra50418;Parent=Phyra50418;rank=2 scaffold_52 . exon 38172 38245 . + . ID=Phyra50418.2;Parent=Phyra50418;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 ensembl protein_coding_gene 30780 31301 . + . ID=Phyra80740;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000011;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 30780 31301 . + . ID=Phyra80740;Parent=Phyra80740;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 30780 31301 . + 0 ID=Phyra80740;Parent=Phyra80740;rank=1 scaffold_52 . exon 30780 31301 . + . ID=Phyra80740.1;Parent=Phyra80740;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 32689 33268 . + . ID=Phyra80741;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000012;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 32689 33268 . + . ID=Phyra80741;Parent=Phyra80741;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 32689 33029 . + 0 ID=Phyra80741;Parent=Phyra80741;rank=1 scaffold_52 . exon 32689 33029 . + . ID=Phyra80741.1;Parent=Phyra80741;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 . CDS 33100 33268 . + 0 ID=Phyra80741;Parent=Phyra80741;rank=2 scaffold_52 . exon 33100 33268 . + . ID=Phyra80741.2;Parent=Phyra80741;constitutive=1;ensembl_phase=2;rank=2 scaffold_52 ensembl protein_coding_gene 33978 34697 . - . ID=Phyra80742;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000013;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 33978 34697 . - . ID=Phyra80742;Parent=Phyra80742;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 33978 34697 . - 0 ID=Phyra80742;Parent=Phyra80742;rank=1 scaffold_52 . exon 33978 34697 . - . ID=Phyra80742.1;Parent=Phyra80742;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 35298 36062 . - . ID=Phyra80743;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000014;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 35298 36062 . - . ID=Phyra80743;Parent=Phyra80743;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 35298 36062 . - 0 ID=Phyra80743;Parent=Phyra80743;rank=1 scaffold_52 . exon 35298 36062 . - . ID=Phyra80743.1;Parent=Phyra80743;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 36864 37064 . + . ID=Phyra95806;biotype=protein_coding;external_name=C_scaffold_52000001;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 36864 37064 . + . ID=Phyra95806;Parent=Phyra95806;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 36864 37064 . + 0 ID=Phyra95806;Parent=Phyra95806;rank=1 scaffold_52 . exon 36864 37064 . + . ID=Phyra95806.1;Parent=Phyra95806;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 39125 40819 . - . ID=Phyra95809;biotype=protein_coding;external_name=C_scaffold_52000004;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 39125 40819 . - . ID=Phyra95809;Parent=Phyra95809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 39125 39272 . - 0 ID=Phyra95809;Parent=Phyra95809;rank=4 scaffold_52 . exon 39125 39272 . - . ID=Phyra95809.4;Parent=Phyra95809;constitutive=1;ensembl_phase=2;rank=4 scaffold_52 . CDS 39351 39875 . - 0 ID=Phyra95809;Parent=Phyra95809;rank=3 scaffold_52 . exon 39351 39875 . - . ID=Phyra95809.3;Parent=Phyra95809;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_52 . CDS 39974 40419 . - 0 ID=Phyra95809;Parent=Phyra95809;rank=2 scaffold_52 . CDS 40475 40819 . - 0 ID=Phyra95809;Parent=Phyra95809;rank=1 scaffold_52 . repeat_region 40646 40690 . ? . description=trf scaffold_52 . repeat_region 46920 47093 . ? . description=trf scaffold_52 ensembl protein_coding_gene 42386 43718 . - . ID=Phyra80746;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000017;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 42386 43718 . - . ID=Phyra80746;Parent=Phyra80746;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 42386 42876 . - 0 ID=Phyra80746;Parent=Phyra80746;rank=2 scaffold_52 . exon 42386 42876 . - . ID=Phyra80746.2;Parent=Phyra80746;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 43091 43718 . - 0 ID=Phyra80746;Parent=Phyra80746;rank=1 scaffold_52 . exon 43091 43718 . - . ID=Phyra80746.1;Parent=Phyra80746;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . exon 39974 40419 . - . ID=Phyra95809.2;Parent=Phyra95809;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_52 . exon 40475 40819 . - . ID=Phyra95809.1;Parent=Phyra95809;constitutive=1;rank=1 scaffold_52 . biological_region 51079 51082 0.999 - . logic_name=eponine scaffold_52 . biological_region 51830 51831 0.999 - . logic_name=eponine scaffold_52 . biological_region 52484 52488 0.999 - . logic_name=eponine scaffold_52 . biological_region 53118 53123 0.999 + . logic_name=eponine scaffold_52 . repeat_region 53589 53638 . ? . description=dust scaffold_52 . repeat_region 54805 54854 . ? . description=dust scaffold_52 . repeat_region 58516 58525 . ? . description=dust scaffold_52 ensembl protein_coding_gene 50422 53457 . - . ID=Phyra80747;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000018;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 50422 53457 . - . ID=Phyra80747;Parent=Phyra80747;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 50422 50662 . - 0 ID=Phyra80747;Parent=Phyra80747;rank=6 scaffold_52 . exon 50422 50662 . - . ID=Phyra80747.6;Parent=Phyra80747;constitutive=1;ensembl_phase=2;rank=6 scaffold_52 . CDS 51453 51614 . - 0 ID=Phyra80747;Parent=Phyra80747;rank=5 scaffold_52 . exon 51453 51614 . - . ID=Phyra80747.5;Parent=Phyra80747;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_52 . CDS 51654 52241 . - 0 ID=Phyra80747;Parent=Phyra80747;rank=4 scaffold_52 . exon 51654 52241 . - . ID=Phyra80747.4;Parent=Phyra80747;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_52 . CDS 52269 52496 . - 0 ID=Phyra80747;Parent=Phyra80747;rank=3 scaffold_52 . exon 52269 52496 . - . ID=Phyra80747.3;Parent=Phyra80747;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_52 . CDS 52601 53195 . - 0 ID=Phyra80747;Parent=Phyra80747;rank=2 scaffold_52 . exon 52601 53195 . - . ID=Phyra80747.2;Parent=Phyra80747;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_52 . CDS 53403 53457 . - 0 ID=Phyra80747;Parent=Phyra80747;rank=1 scaffold_52 . exon 53403 53457 . - . ID=Phyra80747.1;Parent=Phyra80747;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . repeat_region 60241 60429 . ? . description=trf scaffold_52 . repeat_region 64770 64979 . ? . description=trf scaffold_52 . repeat_region 68659 68694 . ? . description=trf scaffold_52 ensembl protein_coding_gene 63324 68656 . + . ID=Phyra95811;biotype=protein_coding;external_name=C_scaffold_52000006;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 63324 68656 . + . ID=Phyra95811;Parent=Phyra95811;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 63324 63515 . + 0 ID=Phyra95811;Parent=Phyra95811;rank=1 scaffold_52 . exon 63324 63515 . + . ID=Phyra95811.1;Parent=Phyra95811;constitutive=1;rank=1 scaffold_52 . CDS 63588 63773 . + 0 ID=Phyra95811;Parent=Phyra95811;rank=2 scaffold_52 . exon 63588 63773 . + . ID=Phyra95811.2;Parent=Phyra95811;constitutive=1;rank=2 scaffold_52 . CDS 64050 64187 . + 0 ID=Phyra95811;Parent=Phyra95811;rank=3 scaffold_52 . exon 64050 64187 . + . ID=Phyra95811.3;Parent=Phyra95811;constitutive=1;rank=3 scaffold_52 . CDS 64227 64486 . + 0 ID=Phyra95811;Parent=Phyra95811;rank=4 scaffold_52 . exon 64227 64486 . + . ID=Phyra95811.4;Parent=Phyra95811;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_52 . CDS 64530 64546 . + 0 ID=Phyra95811;Parent=Phyra95811;rank=5 scaffold_52 . exon 64530 64546 . + . ID=Phyra95811.5;Parent=Phyra95811;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_52 . CDS 64633 65128 . + 0 ID=Phyra95811;Parent=Phyra95811;rank=6 scaffold_52 . exon 64633 65128 . + . ID=Phyra95811.6;Parent=Phyra95811;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_52 . CDS 65606 65697 . + 0 ID=Phyra95811;Parent=Phyra95811;rank=7 scaffold_52 . exon 65606 65697 . + . ID=Phyra95811.7;Parent=Phyra95811;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_52 . CDS 65968 66369 . + 0 ID=Phyra95811;Parent=Phyra95811;rank=8 scaffold_52 . exon 65968 66369 . + . ID=Phyra95811.8;Parent=Phyra95811;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_52 . CDS 66427 66678 . + 0 ID=Phyra95811;Parent=Phyra95811;rank=9 scaffold_52 . exon 66427 66678 . + . ID=Phyra95811.9;Parent=Phyra95811;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_52 . CDS 66715 67158 . + 0 ID=Phyra95811;Parent=Phyra95811;rank=10 scaffold_52 . exon 66715 67158 . + . ID=Phyra95811.10;Parent=Phyra95811;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_52 . CDS 67195 68201 . + 0 ID=Phyra95811;Parent=Phyra95811;rank=11 scaffold_52 . exon 67195 68201 . + . ID=Phyra95811.11;Parent=Phyra95811;constitutive=1;ensembl_phase=1;rank=11 scaffold_52 . CDS 68286 68516 . + 0 ID=Phyra95811;Parent=Phyra95811;rank=12 scaffold_52 . exon 68286 68516 . + . ID=Phyra95811.12;Parent=Phyra95811;constitutive=1;rank=12 scaffold_52 . CDS 68654 68656 . + 0 ID=Phyra95811;Parent=Phyra95811;rank=13 scaffold_52 . exon 68654 68656 . + . ID=Phyra95811.13;Parent=Phyra95811;constitutive=1;rank=13 scaffold_52 . repeat_region 73729 73826 . ? . description=dust scaffold_52 ensembl protein_coding_gene 74469 77180 . + . ID=Phyra50424;biotype=protein_coding;external_name=gwEuk.52.52.1;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 74469 77180 . + . ID=Phyra50424;Parent=Phyra50424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 74469 77180 . + 0 ID=Phyra50424;Parent=Phyra50424;rank=1 scaffold_52 . exon 74469 77180 . + . ID=Phyra50424.1;Parent=Phyra50424;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 80555 80851 . - . ID=Phyra50430;biotype=protein_coding;external_name=gwEuk.52.58.1;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 80555 80851 . - . ID=Phyra50430;Parent=Phyra50430;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 80555 80851 . - 0 ID=Phyra50430;Parent=Phyra50430;rank=1 scaffold_52 . exon 80555 80851 . - . ID=Phyra50430.1;Parent=Phyra50430;constitutive=1;rank=1 scaffold_52 . repeat_region 92419 92429 . ? . description=dust scaffold_52 . repeat_region 92431 92467 . ? . description=trf scaffold_52 . repeat_region 92439 92483 . ? . description=dust scaffold_52 . repeat_region 92441 92483 . ? . description=trf scaffold_52 . repeat_region 94339 94388 . ? . description=dust scaffold_52 . repeat_region 95048 95055 . ? . description=dust scaffold_52 . repeat_region 95132 95194 . ? . description=dust scaffold_52 . repeat_region 95146 95187 . ? . description=trf scaffold_52 . repeat_region 95150 95193 . ? . description=trf scaffold_52 . repeat_region 95154 95194 . ? . description=trf scaffold_52 . biological_region 97045 97051 0.999 - . logic_name=eponine scaffold_52 . repeat_region 99417 99470 . ? . description=dust scaffold_52 ensembl protein_coding_gene 102025 102963 . - . ID=Phyra80750;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000021;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 102025 102963 . - . ID=Phyra80750;Parent=Phyra80750;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 102025 102293 . - 0 ID=Phyra80750;Parent=Phyra80750;rank=2 scaffold_52 . exon 102025 102293 . - . ID=Phyra80750.2;Parent=Phyra80750;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 102405 102963 . - 0 ID=Phyra80750;Parent=Phyra80750;rank=1 scaffold_52 . exon 102405 102963 . - . ID=Phyra80750.1;Parent=Phyra80750;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 ensembl protein_coding_gene 107587 108663 . - . ID=Phyra80751;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000022;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 107587 108663 . - . ID=Phyra80751;Parent=Phyra80751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 107587 108663 . - 0 ID=Phyra80751;Parent=Phyra80751;rank=1 scaffold_52 . exon 107587 108663 . - . ID=Phyra80751.1;Parent=Phyra80751;constitutive=1;rank=1 scaffold_52 . repeat_region 112154 112161 . ? . description=dust scaffold_52 . repeat_region 113725 113736 . ? . description=dust scaffold_52 . repeat_region 115163 115237 . ? . description=dust scaffold_52 . biological_region 115781 115784 0.999 - . logic_name=eponine scaffold_52 . repeat_region 118148 118197 . ? . description=dust scaffold_52 ensembl protein_coding_gene 116618 117757 . + . ID=Phyra80752;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000023;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 116618 117757 . + . ID=Phyra80752;Parent=Phyra80752;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 116618 117757 . + 0 ID=Phyra80752;Parent=Phyra80752;rank=1 scaffold_52 . exon 116618 117757 . + . ID=Phyra80752.1;Parent=Phyra80752;constitutive=1;rank=1 scaffold_52 . repeat_region 120959 121043 . ? . description=trf scaffold_52 . repeat_region 121151 121183 . ? . description=trf scaffold_52 . repeat_region 121838 121870 . ? . description=trf scaffold_52 . repeat_region 121978 122066 . ? . description=trf scaffold_52 . repeat_region 123414 123470 . ? . description=trf scaffold_52 . repeat_region 123414 123470 . ? . description=trf scaffold_52 . repeat_region 124235 124337 . - . description=GypsyPi-1c_I-int scaffold_52 . repeat_region 129796 129845 . ? . description=dust scaffold_52 . repeat_region 132781 132830 . ? . description=dust scaffold_52 . biological_region 133696 133697 0.999 - . logic_name=eponine scaffold_52 . repeat_region 133785 133793 . ? . description=dust scaffold_52 . repeat_region 135722 135729 . ? . description=dust scaffold_52 . repeat_region 138524 138678 . - . description=Gypsy-1-I_PI-int scaffold_52 . repeat_region 140152 140184 . ? . description=trf scaffold_52 . repeat_region 140307 142537 . + . description=GypsyPi-1c_I-int scaffold_52 . repeat_region 147883 147903 . ? . description=trf scaffold_52 ensembl protein_coding_gene 140593 142897 . + . ID=Phyra80753;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000024;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 140593 142897 . + . ID=Phyra80753;Parent=Phyra80753;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 140593 141015 . + 0 ID=Phyra80753;Parent=Phyra80753;rank=1 scaffold_52 . exon 140593 141015 . + . ID=Phyra80753.1;Parent=Phyra80753;constitutive=1;rank=1 scaffold_52 . CDS 141058 141267 . + 0 ID=Phyra80753;Parent=Phyra80753;rank=2 scaffold_52 . exon 141058 141267 . + . ID=Phyra80753.2;Parent=Phyra80753;constitutive=1;rank=2 scaffold_52 . CDS 141629 141994 . + 0 ID=Phyra80753;Parent=Phyra80753;rank=3 scaffold_52 . exon 141629 141994 . + . ID=Phyra80753.3;Parent=Phyra80753;constitutive=1;rank=3 scaffold_52 . CDS 142348 142601 . + 0 ID=Phyra80753;Parent=Phyra80753;rank=4 scaffold_52 . exon 142348 142601 . + . ID=Phyra80753.4;Parent=Phyra80753;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_52 . CDS 142689 142850 . + 0 ID=Phyra80753;Parent=Phyra80753;rank=5 scaffold_52 . exon 142689 142850 . + . ID=Phyra80753.5;Parent=Phyra80753;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_52 . CDS 142891 142897 . + 0 ID=Phyra80753;Parent=Phyra80753;rank=6 scaffold_52 . exon 142891 142897 . + . ID=Phyra80753.6;Parent=Phyra80753;constitutive=1;ensembl_phase=2;rank=6 scaffold_52 ensembl protein_coding_gene 144751 145818 . - . ID=Phyra80754;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000025;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 144751 145818 . - . ID=Phyra80754;Parent=Phyra80754;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 144751 145818 . - 0 ID=Phyra80754;Parent=Phyra80754;rank=1 scaffold_52 . exon 144751 145818 . - . ID=Phyra80754.1;Parent=Phyra80754;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 149490 152080 . + . ID=Phyra80755;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000026;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 149490 152080 . + . ID=Phyra80755;Parent=Phyra80755;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 149490 151659 . + 0 ID=Phyra80755;Parent=Phyra80755;rank=1 scaffold_52 . exon 149490 151659 . + . ID=Phyra80755.1;Parent=Phyra80755;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . CDS 151735 151972 . + 0 ID=Phyra80755;Parent=Phyra80755;rank=2 scaffold_52 . CDS 152005 152080 . + 0 ID=Phyra80755;Parent=Phyra80755;rank=3 scaffold_52 . biological_region 149671 149676 0.999 - . logic_name=eponine scaffold_52 . biological_region 149712 149714 0.999 + . logic_name=eponine scaffold_52 . biological_region 154783 154783 0.999 + . logic_name=eponine scaffold_52 . biological_region 159130 159132 0.999 - . logic_name=eponine scaffold_52 . exon 151735 151972 . + . ID=Phyra80755.2;Parent=Phyra80755;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_52 . exon 152005 152080 . + . ID=Phyra80755.3;Parent=Phyra80755;constitutive=1;ensembl_phase=2;rank=3 scaffold_52 ensembl protein_coding_gene 152795 156707 . - . ID=Phyra80756;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000027;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 152795 156707 . - . ID=Phyra80756;Parent=Phyra80756;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 152795 153363 . - 0 ID=Phyra80756;Parent=Phyra80756;rank=5 scaffold_52 . exon 152795 153363 . - . ID=Phyra80756.5;Parent=Phyra80756;constitutive=1;ensembl_phase=1;rank=5 scaffold_52 . CDS 153640 154947 . - 0 ID=Phyra80756;Parent=Phyra80756;rank=4 scaffold_52 . exon 153640 154947 . - . ID=Phyra80756.4;Parent=Phyra80756;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_52 . CDS 154990 155006 . - 0 ID=Phyra80756;Parent=Phyra80756;rank=3 scaffold_52 . exon 154990 155006 . - . ID=Phyra80756.3;Parent=Phyra80756;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_52 . CDS 155084 155586 . - 0 ID=Phyra80756;Parent=Phyra80756;rank=2 scaffold_52 . exon 155084 155586 . - . ID=Phyra80756.2;Parent=Phyra80756;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_52 . CDS 155652 156707 . - 0 ID=Phyra80756;Parent=Phyra80756;rank=1 scaffold_52 . exon 155652 156707 . - . ID=Phyra80756.1;Parent=Phyra80756;constitutive=1;rank=1 scaffold_52 . repeat_region 162321 162351 . ? . description=trf scaffold_52 . repeat_region 163538 163587 . ? . description=trf scaffold_52 . repeat_region 169233 169266 . ? . description=trf scaffold_52 ensembl protein_coding_gene 162864 163777 . - . ID=Phyra80757;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000028;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 162864 163777 . - . ID=Phyra80757;Parent=Phyra80757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 162864 162866 . - 0 ID=Phyra80757;Parent=Phyra80757;rank=2 scaffold_52 . exon 162864 162866 . - . ID=Phyra80757.2;Parent=Phyra80757;constitutive=1;rank=2 scaffold_52 . CDS 163019 163777 . - 0 ID=Phyra80757;Parent=Phyra80757;rank=1 scaffold_52 . exon 163019 163777 . - . ID=Phyra80757.1;Parent=Phyra80757;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 165891 168944 . - . ID=Phyra80758;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000029;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 165891 168944 . - . ID=Phyra80758;Parent=Phyra80758;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 165891 168944 . - 0 ID=Phyra80758;Parent=Phyra80758;rank=1 scaffold_52 . exon 165891 168944 . - . ID=Phyra80758.1;Parent=Phyra80758;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 169585 170170 . + . ID=Phyra80759;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000030;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 169585 170170 . + . ID=Phyra80759;Parent=Phyra80759;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 169585 169752 . + 0 ID=Phyra80759;Parent=Phyra80759;rank=1 scaffold_52 . exon 169585 169752 . + . ID=Phyra80759.1;Parent=Phyra80759;constitutive=1;rank=1 scaffold_52 . CDS 170036 170170 . + 0 ID=Phyra80759;Parent=Phyra80759;rank=2 scaffold_52 . biological_region 178382 178385 0.999 - . logic_name=eponine scaffold_52 . exon 170036 170170 . + . ID=Phyra80759.2;Parent=Phyra80759;constitutive=1;rank=2 scaffold_52 ensembl protein_coding_gene 171648 172175 . - . ID=Phyra80760;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000031;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 171648 172175 . - . ID=Phyra80760;Parent=Phyra80760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 171648 172175 . - 0 ID=Phyra80760;Parent=Phyra80760;rank=1 scaffold_52 . exon 171648 172175 . - . ID=Phyra80760.1;Parent=Phyra80760;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 172846 173949 . + . ID=Phyra80761;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000032;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 172846 173949 . + . ID=Phyra80761;Parent=Phyra80761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 172846 173159 . + 0 ID=Phyra80761;Parent=Phyra80761;rank=1 scaffold_52 . exon 172846 173159 . + . ID=Phyra80761.1;Parent=Phyra80761;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 . CDS 173220 173949 . + 0 ID=Phyra80761;Parent=Phyra80761;rank=2 scaffold_52 . exon 173220 173949 . + . ID=Phyra80761.2;Parent=Phyra80761;constitutive=1;ensembl_phase=2;rank=2 scaffold_52 ensembl protein_coding_gene 174063 176546 . - . ID=Phyra80762;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000033;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 174063 176546 . - . ID=Phyra80762;Parent=Phyra80762;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 174063 176546 . - 0 ID=Phyra80762;Parent=Phyra80762;rank=1 scaffold_52 . exon 174063 176546 . - . ID=Phyra80762.1;Parent=Phyra80762;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 176837 178666 . + . ID=Phyra80763;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000034;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 176837 178666 . + . ID=Phyra80763;Parent=Phyra80763;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 176837 177244 . + 0 ID=Phyra80763;Parent=Phyra80763;rank=1 scaffold_52 . exon 176837 177244 . + . ID=Phyra80763.1;Parent=Phyra80763;constitutive=1;rank=1 scaffold_52 . CDS 177307 177431 . + 0 ID=Phyra80763;Parent=Phyra80763;rank=2 scaffold_52 . exon 177307 177431 . + . ID=Phyra80763.2;Parent=Phyra80763;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_52 . CDS 177503 177710 . + 0 ID=Phyra80763;Parent=Phyra80763;rank=3 scaffold_52 . exon 177503 177710 . + . ID=Phyra80763.3;Parent=Phyra80763;constitutive=1;ensembl_phase=2;rank=3 scaffold_52 . CDS 177785 178666 . + 0 ID=Phyra80763;Parent=Phyra80763;rank=4 scaffold_52 . exon 177785 178666 . + . ID=Phyra80763.4;Parent=Phyra80763;constitutive=1;rank=4 scaffold_52 ensembl protein_coding_gene 178947 180050 . - . ID=Phyra80764;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000035;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 178947 180050 . - . ID=Phyra80764;Parent=Phyra80764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 178947 179590 . - 0 ID=Phyra80764;Parent=Phyra80764;rank=3 scaffold_52 . exon 178947 179590 . - . ID=Phyra80764.3;Parent=Phyra80764;constitutive=1;ensembl_phase=1;rank=3 scaffold_52 . CDS 179664 179847 . - 0 ID=Phyra80764;Parent=Phyra80764;rank=2 scaffold_52 . CDS 179907 180050 . - 0 ID=Phyra80764;Parent=Phyra80764;rank=1 scaffold_52 . repeat_region 182231 182890 . ? . description=trf scaffold_52 . repeat_region 184399 184407 . ? . description=dust scaffold_52 . repeat_region 184897 184904 . ? . description=dust scaffold_52 . exon 179664 179847 . - . ID=Phyra80764.2;Parent=Phyra80764;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_52 . exon 179907 180050 . - . ID=Phyra80764.1;Parent=Phyra80764;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 180244 180820 . + . ID=Phyra80765;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000036;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 180244 180820 . + . ID=Phyra80765;Parent=Phyra80765;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 180244 180279 . + 0 ID=Phyra80765;Parent=Phyra80765;rank=1 scaffold_52 . exon 180244 180279 . + . ID=Phyra80765.1;Parent=Phyra80765;constitutive=1;rank=1 scaffold_52 . CDS 180344 180820 . + 0 ID=Phyra80765;Parent=Phyra80765;rank=2 scaffold_52 . exon 180344 180820 . + . ID=Phyra80765.2;Parent=Phyra80765;constitutive=1;rank=2 scaffold_52 ensembl protein_coding_gene 181974 183256 . + . ID=Phyra95813;biotype=protein_coding;external_name=C_scaffold_52000008;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 181974 183256 . + . ID=Phyra95813;Parent=Phyra95813;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 181974 182961 . + 0 ID=Phyra95813;Parent=Phyra95813;rank=1 scaffold_52 . exon 181974 182961 . + . ID=Phyra95813.1;Parent=Phyra95813;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . CDS 183022 183141 . + 0 ID=Phyra95813;Parent=Phyra95813;rank=2 scaffold_52 . exon 183022 183141 . + . ID=Phyra95813.2;Parent=Phyra95813;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 183207 183256 . + 0 ID=Phyra95813;Parent=Phyra95813;rank=3 scaffold_52 . exon 183207 183256 . + . ID=Phyra95813.3;Parent=Phyra95813;constitutive=1;ensembl_phase=1;rank=3 scaffold_52 . biological_region 197854 197856 0.999 + . logic_name=eponine scaffold_52 . biological_region 198674 198676 0.999 - . logic_name=eponine scaffold_52 ensembl protein_coding_gene 193490 195425 . + . ID=Phyra80767;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000038;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 193490 195425 . + . ID=Phyra80767;Parent=Phyra80767;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 193490 193846 . + 0 ID=Phyra80767;Parent=Phyra80767;rank=1 scaffold_52 . exon 193490 193846 . + . ID=Phyra80767.1;Parent=Phyra80767;constitutive=1;rank=1 scaffold_52 . CDS 193898 193966 . + 0 ID=Phyra80767;Parent=Phyra80767;rank=2 scaffold_52 . exon 193898 193966 . + . ID=Phyra80767.2;Parent=Phyra80767;constitutive=1;rank=2 scaffold_52 . CDS 194029 195279 . + 0 ID=Phyra80767;Parent=Phyra80767;rank=3 scaffold_52 . exon 194029 195279 . + . ID=Phyra80767.3;Parent=Phyra80767;constitutive=1;rank=3 scaffold_52 . CDS 195342 195425 . + 0 ID=Phyra80767;Parent=Phyra80767;rank=4 scaffold_52 . exon 195342 195425 . + . ID=Phyra80767.4;Parent=Phyra80767;constitutive=1;rank=4 scaffold_52 ensembl protein_coding_gene 195590 197956 . - . ID=Phyra80768;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000039;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 195590 197956 . - . ID=Phyra80768;Parent=Phyra80768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 195590 195676 . - 0 ID=Phyra80768;Parent=Phyra80768;rank=4 scaffold_52 . exon 195590 195676 . - . ID=Phyra80768.4;Parent=Phyra80768;constitutive=1;rank=4 scaffold_52 . CDS 195759 196518 . - 0 ID=Phyra80768;Parent=Phyra80768;rank=3 scaffold_52 . exon 195759 196518 . - . ID=Phyra80768.3;Parent=Phyra80768;constitutive=1;ensembl_phase=2;rank=3 scaffold_52 . CDS 196589 197704 . - 0 ID=Phyra80768;Parent=Phyra80768;rank=2 scaffold_52 . exon 196589 197704 . - . ID=Phyra80768.2;Parent=Phyra80768;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_52 . CDS 197868 197956 . - 0 ID=Phyra80768;Parent=Phyra80768;rank=1 scaffold_52 . exon 197868 197956 . - . ID=Phyra80768.1;Parent=Phyra80768;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 ensembl protein_coding_gene 198129 199550 . + . ID=Phyra80769;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000040;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 198129 199550 . + . ID=Phyra80769;Parent=Phyra80769;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 198129 199550 . + 0 ID=Phyra80769;Parent=Phyra80769;rank=1 scaffold_52 . exon 198129 199550 . + . ID=Phyra80769.1;Parent=Phyra80769;constitutive=1;rank=1 scaffold_52 . repeat_region 201296 201303 . ? . description=dust scaffold_52 ensembl protein_coding_gene 200058 201008 . - . ID=Phyra80770;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000041;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 200058 201008 . - . ID=Phyra80770;Parent=Phyra80770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 200058 201008 . - 0 ID=Phyra80770;Parent=Phyra80770;rank=1 scaffold_52 . exon 200058 201008 . - . ID=Phyra80770.1;Parent=Phyra80770;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 202595 204151 . + . ID=Phyra80771;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000042;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 202595 204151 . + . ID=Phyra80771;Parent=Phyra80771;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 202595 204151 . + 0 ID=Phyra80771;Parent=Phyra80771;rank=1 scaffold_52 . exon 202595 204151 . + . ID=Phyra80771.1;Parent=Phyra80771;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 204742 208089 . + . ID=Phyra80772;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000043;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 204742 208089 . + . ID=Phyra80772;Parent=Phyra80772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 204742 206223 . + 0 ID=Phyra80772;Parent=Phyra80772;rank=1 scaffold_52 . exon 204742 206223 . + . ID=Phyra80772.1;Parent=Phyra80772;constitutive=1;rank=1 scaffold_52 . CDS 206375 206483 . + 0 ID=Phyra80772;Parent=Phyra80772;rank=2 scaffold_52 . exon 206375 206483 . + . ID=Phyra80772.2;Parent=Phyra80772;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_52 . CDS 206654 208089 . + 0 ID=Phyra80772;Parent=Phyra80772;rank=3 scaffold_52 . exon 206654 208089 . + . ID=Phyra80772.3;Parent=Phyra80772;constitutive=1;ensembl_phase=1;rank=3 scaffold_52 . biological_region 215408 215414 0.999 + . logic_name=eponine scaffold_52 . repeat_region 215652 215693 . ? . description=trf scaffold_52 ensembl protein_coding_gene 215419 219451 . + . ID=Phyra80773;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000044;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 215419 219451 . + . ID=Phyra80773;Parent=Phyra80773;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 215419 215514 . + 0 ID=Phyra80773;Parent=Phyra80773;rank=1 scaffold_52 . exon 215419 215514 . + . ID=Phyra80773.1;Parent=Phyra80773;constitutive=1;rank=1 scaffold_52 . CDS 215580 215762 . + 0 ID=Phyra80773;Parent=Phyra80773;rank=2 scaffold_52 . exon 215580 215762 . + . ID=Phyra80773.2;Parent=Phyra80773;constitutive=1;rank=2 scaffold_52 . CDS 215829 215969 . + 0 ID=Phyra80773;Parent=Phyra80773;rank=3 scaffold_52 . exon 215829 215969 . + . ID=Phyra80773.3;Parent=Phyra80773;constitutive=1;rank=3 scaffold_52 . CDS 216043 216590 . + 0 ID=Phyra80773;Parent=Phyra80773;rank=4 scaffold_52 . exon 216043 216590 . + . ID=Phyra80773.4;Parent=Phyra80773;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_52 . CDS 216659 219345 . + 0 ID=Phyra80773;Parent=Phyra80773;rank=5 scaffold_52 . exon 216659 219345 . + . ID=Phyra80773.5;Parent=Phyra80773;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_52 . CDS 219393 219451 . + 0 ID=Phyra80773;Parent=Phyra80773;rank=6 scaffold_52 . exon 219393 219451 . + . ID=Phyra80773.6;Parent=Phyra80773;constitutive=1;ensembl_phase=1;rank=6 scaffold_52 . repeat_region 220728 220735 . ? . description=dust scaffold_52 . repeat_region 226315 226364 . ? . description=dust scaffold_52 . repeat_region 228249 228256 . ? . description=dust scaffold_52 ensembl protein_coding_gene 224617 228127 . - . ID=Phyra80774;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000045;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 224617 228127 . - . ID=Phyra80774;Parent=Phyra80774;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 224617 225384 . - 0 ID=Phyra80774;Parent=Phyra80774;rank=3 scaffold_52 . exon 224617 225384 . - . ID=Phyra80774.3;Parent=Phyra80774;constitutive=1;rank=3 scaffold_52 . CDS 225442 226139 . - 0 ID=Phyra80774;Parent=Phyra80774;rank=2 scaffold_52 . exon 225442 226139 . - . ID=Phyra80774.2;Parent=Phyra80774;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 226375 228127 . - 0 ID=Phyra80774;Parent=Phyra80774;rank=1 scaffold_52 . exon 226375 228127 . - . ID=Phyra80774.1;Parent=Phyra80774;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . biological_region 235628 235630 0.999 - . logic_name=eponine scaffold_52 ensembl protein_coding_gene 241202 241666 . - . ID=Phyra80775;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000046;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 241202 241666 . - . ID=Phyra80775;Parent=Phyra80775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 241202 241666 . - 0 ID=Phyra80775;Parent=Phyra80775;rank=1 scaffold_52 . exon 241202 241666 . - . ID=Phyra80775.1;Parent=Phyra80775;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 245688 249968 . - . ID=Phyra80776;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000047;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 245688 249968 . - . ID=Phyra80776;Parent=Phyra80776;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 245688 249968 . - 0 ID=Phyra80776;Parent=Phyra80776;rank=1 scaffold_52 . exon 245688 249968 . - . ID=Phyra80776.1;Parent=Phyra80776;constitutive=1;rank=1 scaffold_52 . biological_region 249449 249453 0.999 + . logic_name=eponine scaffold_52 . biological_region 249881 249884 0.999 + . logic_name=eponine scaffold_52 . biological_region 250874 250877 0.999 - . logic_name=eponine scaffold_52 . biological_region 251602 251604 0.999 + . logic_name=eponine scaffold_52 . biological_region 251670 251670 0.999 + . logic_name=eponine scaffold_52 . biological_region 253255 253258 0.999 - . logic_name=eponine scaffold_52 . biological_region 253259 253263 0.999 + . logic_name=eponine scaffold_52 . repeat_region 253931 253952 . ? . description=trf scaffold_52 . repeat_region 255013 255062 . ? . description=dust scaffold_52 . repeat_region 256319 256618 . ? . description=trf scaffold_52 . repeat_region 256344 256640 . ? . description=trf scaffold_52 . repeat_region 256353 256537 . ? . description=trf scaffold_52 . biological_region 257314 257314 0.999 - . logic_name=eponine scaffold_52 ensembl protein_coding_gene 256710 257858 . - . ID=Phyra50378;biotype=protein_coding;external_name=gwEuk.52.6.1;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 256710 257858 . - . ID=Phyra50378;Parent=Phyra50378;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 256710 257858 . - 0 ID=Phyra50378;Parent=Phyra50378;rank=1 scaffold_52 . exon 256710 257858 . - . ID=Phyra50378.1;Parent=Phyra50378;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 251396 252424 . - . ID=Phyra71830;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_52000002;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 251396 252424 . - . ID=Phyra71830;Parent=Phyra71830;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 251396 252424 . - 0 ID=Phyra71830;Parent=Phyra71830;rank=1 scaffold_52 . exon 251396 252424 . - . ID=Phyra71830.1;Parent=Phyra71830;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 253185 256047 . + . ID=Phyra80778;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000049;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 253185 256047 . + . ID=Phyra80778;Parent=Phyra80778;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 253185 253429 . + 0 ID=Phyra80778;Parent=Phyra80778;rank=1 scaffold_52 . exon 253185 253429 . + . ID=Phyra80778.1;Parent=Phyra80778;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 . CDS 253511 253576 . + 0 ID=Phyra80778;Parent=Phyra80778;rank=2 scaffold_52 . exon 253511 253576 . + . ID=Phyra80778.2;Parent=Phyra80778;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_52 . CDS 253659 253724 . + 0 ID=Phyra80778;Parent=Phyra80778;rank=3 scaffold_52 . exon 253659 253724 . + . ID=Phyra80778.3;Parent=Phyra80778;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_52 . CDS 254008 254073 . + 0 ID=Phyra80778;Parent=Phyra80778;rank=4 scaffold_52 . exon 254008 254073 . + . ID=Phyra80778.4;Parent=Phyra80778;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_52 . CDS 254284 254349 . + 0 ID=Phyra80778;Parent=Phyra80778;rank=5 scaffold_52 . exon 254284 254349 . + . ID=Phyra80778.5;Parent=Phyra80778;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_52 . CDS 254424 254605 . + 0 ID=Phyra80778;Parent=Phyra80778;rank=6 scaffold_52 . exon 254424 254605 . + . ID=Phyra80778.6;Parent=Phyra80778;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_52 . CDS 254678 254974 . + 0 ID=Phyra80778;Parent=Phyra80778;rank=7 scaffold_52 . exon 254678 254974 . + . ID=Phyra80778.7;Parent=Phyra80778;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_52 . CDS 255107 256047 . + 0 ID=Phyra80778;Parent=Phyra80778;rank=8 scaffold_52 . exon 255107 256047 . + . ID=Phyra80778.8;Parent=Phyra80778;constitutive=1;ensembl_phase=1;rank=8 scaffold_52 ensembl protein_coding_gene 259881 262415 . - . ID=Phyra80780;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000051;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 259881 262415 . - . ID=Phyra80780;Parent=Phyra80780;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 259881 260971 . - 0 ID=Phyra80780;Parent=Phyra80780;rank=9 scaffold_52 . exon 259881 260971 . - . ID=Phyra80780.9;Parent=Phyra80780;constitutive=1;ensembl_phase=1;rank=9 scaffold_52 . CDS 261059 261097 . - 0 ID=Phyra80780;Parent=Phyra80780;rank=8 scaffold_52 . exon 261059 261097 . - . ID=Phyra80780.8;Parent=Phyra80780;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_52 . CDS 261168 261334 . - 0 ID=Phyra80780;Parent=Phyra80780;rank=7 scaffold_52 . exon 261168 261334 . - . ID=Phyra80780.7;Parent=Phyra80780;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_52 . CDS 261402 261467 . - 0 ID=Phyra80780;Parent=Phyra80780;rank=6 scaffold_52 . exon 261402 261467 . - . ID=Phyra80780.6;Parent=Phyra80780;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_52 . CDS 261542 261613 . - 0 ID=Phyra80780;Parent=Phyra80780;rank=5 scaffold_52 . exon 261542 261613 . - . ID=Phyra80780.5;Parent=Phyra80780;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_52 . CDS 261695 261760 . - 0 ID=Phyra80780;Parent=Phyra80780;rank=4 scaffold_52 . exon 261695 261760 . - . ID=Phyra80780.4;Parent=Phyra80780;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_52 . CDS 261822 261947 . - 0 ID=Phyra80780;Parent=Phyra80780;rank=3 scaffold_52 . exon 261822 261947 . - . ID=Phyra80780.3;Parent=Phyra80780;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_52 . CDS 262014 262079 . - 0 ID=Phyra80780;Parent=Phyra80780;rank=2 scaffold_52 . exon 262014 262079 . - . ID=Phyra80780.2;Parent=Phyra80780;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_52 . CDS 262276 262415 . - 0 ID=Phyra80780;Parent=Phyra80780;rank=1 scaffold_52 . exon 262276 262415 . - . ID=Phyra80780.1;Parent=Phyra80780;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 ensembl protein_coding_gene 262545 263841 . + . ID=Phyra80781;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000052;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 262545 263841 . + . ID=Phyra80781;Parent=Phyra80781;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 262545 263422 . + 0 ID=Phyra80781;Parent=Phyra80781;rank=1 scaffold_52 . exon 262545 263422 . + . ID=Phyra80781.1;Parent=Phyra80781;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 . CDS 263516 263750 . + 0 ID=Phyra80781;Parent=Phyra80781;rank=2 scaffold_52 . exon 263516 263750 . + . ID=Phyra80781.2;Parent=Phyra80781;constitutive=1;ensembl_phase=2;rank=2 scaffold_52 . CDS 263773 263841 . + 0 ID=Phyra80781;Parent=Phyra80781;rank=3 scaffold_52 . exon 263773 263841 . + . ID=Phyra80781.3;Parent=Phyra80781;constitutive=1;rank=3 scaffold_52 ensembl protein_coding_gene 271784 272839 . - . ID=Phyra80782;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000053;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 271784 272839 . - . ID=Phyra80782;Parent=Phyra80782;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 271784 271942 . - 0 ID=Phyra80782;Parent=Phyra80782;rank=6 scaffold_52 . exon 271784 271942 . - . ID=Phyra80782.6;Parent=Phyra80782;constitutive=1;rank=6 scaffold_52 . CDS 272014 272091 . - 0 ID=Phyra80782;Parent=Phyra80782;rank=5 scaffold_52 . exon 272014 272091 . - . ID=Phyra80782.5;Parent=Phyra80782;constitutive=1;rank=5 scaffold_52 . CDS 272167 272268 . - 0 ID=Phyra80782;Parent=Phyra80782;rank=4 scaffold_52 . exon 272167 272268 . - . ID=Phyra80782.4;Parent=Phyra80782;constitutive=1;rank=4 scaffold_52 . CDS 272338 272472 . - 0 ID=Phyra80782;Parent=Phyra80782;rank=3 scaffold_52 . exon 272338 272472 . - . ID=Phyra80782.3;Parent=Phyra80782;constitutive=1;rank=3 scaffold_52 . CDS 272539 272704 . - 0 ID=Phyra80782;Parent=Phyra80782;rank=2 scaffold_52 . exon 272539 272704 . - . ID=Phyra80782.2;Parent=Phyra80782;constitutive=1;ensembl_phase=2;rank=2 scaffold_52 . CDS 272778 272839 . - 0 ID=Phyra80782;Parent=Phyra80782;rank=1 scaffold_52 . exon 272778 272839 . - . ID=Phyra80782.1;Parent=Phyra80782;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 ensembl protein_coding_gene 274331 275322 . - . ID=Phyra80783;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000054;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 274331 275322 . - . ID=Phyra80783;Parent=Phyra80783;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 274331 274406 . - 0 ID=Phyra80783;Parent=Phyra80783;rank=5 scaffold_52 . exon 274331 274406 . - . ID=Phyra80783.5;Parent=Phyra80783;constitutive=1;ensembl_phase=2;rank=5 scaffold_52 . CDS 274434 274489 . - 0 ID=Phyra80783;Parent=Phyra80783;rank=4 scaffold_52 . exon 274434 274489 . - . ID=Phyra80783.4;Parent=Phyra80783;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_52 . CDS 274701 274802 . - 0 ID=Phyra80783;Parent=Phyra80783;rank=3 scaffold_52 . exon 274701 274802 . - . ID=Phyra80783.3;Parent=Phyra80783;constitutive=1;rank=3 scaffold_52 . CDS 274868 275168 . - 0 ID=Phyra80783;Parent=Phyra80783;rank=2 scaffold_52 . exon 274868 275168 . - . ID=Phyra80783.2;Parent=Phyra80783;constitutive=1;ensembl_phase=2;rank=2 scaffold_52 . CDS 275261 275322 . - 0 ID=Phyra80783;Parent=Phyra80783;rank=1 scaffold_52 . exon 275261 275322 . - . ID=Phyra80783.1;Parent=Phyra80783;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 ensembl protein_coding_gene 275845 276781 . + . ID=Phyra80784;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000055;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 275845 276781 . + . ID=Phyra80784;Parent=Phyra80784;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 275845 275921 . + 0 ID=Phyra80784;Parent=Phyra80784;rank=1 scaffold_52 . exon 275845 275921 . + . ID=Phyra80784.1;Parent=Phyra80784;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 . CDS 275990 276392 . + 0 ID=Phyra80784;Parent=Phyra80784;rank=2 scaffold_52 . exon 275990 276392 . + . ID=Phyra80784.2;Parent=Phyra80784;constitutive=1;ensembl_phase=2;rank=2 scaffold_52 . CDS 276466 276543 . + 0 ID=Phyra80784;Parent=Phyra80784;rank=3 scaffold_52 . exon 276466 276543 . + . ID=Phyra80784.3;Parent=Phyra80784;constitutive=1;rank=3 scaffold_52 . CDS 276599 276781 . + 0 ID=Phyra80784;Parent=Phyra80784;rank=4 scaffold_52 . exon 276599 276781 . + . ID=Phyra80784.4;Parent=Phyra80784;constitutive=1;rank=4 scaffold_52 ensembl protein_coding_gene 277038 280184 . + . ID=Phyra80785;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000056;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 277038 280184 . + . ID=Phyra80785;Parent=Phyra80785;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 277038 280184 . + 0 ID=Phyra80785;Parent=Phyra80785;rank=1 scaffold_52 . exon 277038 280184 . + . ID=Phyra80785.1;Parent=Phyra80785;constitutive=1;rank=1 scaffold_52 . biological_region 279392 279393 0.999 - . logic_name=eponine scaffold_52 . biological_region 280827 280828 0.999 + . logic_name=eponine scaffold_52 . biological_region 280843 280849 0.999 + . logic_name=eponine scaffold_52 . biological_region 281462 281464 0.999 - . logic_name=eponine scaffold_52 . biological_region 281751 281753 0.999 + . logic_name=eponine scaffold_52 . biological_region 282388 282392 0.999 - . logic_name=eponine scaffold_52 . biological_region 282616 282618 0.999 - . logic_name=eponine scaffold_52 . biological_region 282686 282692 0.999 + . logic_name=eponine scaffold_52 . biological_region 282771 282776 0.999 + . logic_name=eponine scaffold_52 . biological_region 283175 283177 0.999 - . logic_name=eponine scaffold_52 . biological_region 284131 284133 0.999 - . logic_name=eponine scaffold_52 . biological_region 284153 284156 0.999 + . logic_name=eponine scaffold_52 . biological_region 284218 284222 0.999 + . logic_name=eponine scaffold_52 . biological_region 284220 284222 0.999 - . logic_name=eponine scaffold_52 . biological_region 284284 284287 0.999 - . logic_name=eponine scaffold_52 . biological_region 284565 284571 0.999 + . logic_name=eponine scaffold_52 . biological_region 284624 284626 0.999 - . logic_name=eponine scaffold_52 . biological_region 284677 284682 0.999 + . logic_name=eponine scaffold_52 . biological_region 284699 284708 0.999 - . logic_name=eponine scaffold_52 . repeat_region 284749 284775 . ? . description=trf scaffold_52 . biological_region 285529 285530 0.999 + . logic_name=eponine scaffold_52 . biological_region 286136 286139 0.999 + . logic_name=eponine scaffold_52 . biological_region 286281 286286 0.999 + . logic_name=eponine scaffold_52 . biological_region 286751 286752 0.999 - . logic_name=eponine scaffold_52 . biological_region 287496 287497 0.999 - . logic_name=eponine scaffold_52 . biological_region 287557 287559 0.999 - . logic_name=eponine scaffold_52 . biological_region 288059 288061 0.999 - . logic_name=eponine scaffold_52 . biological_region 288115 288123 0.999 + . logic_name=eponine scaffold_52 . biological_region 288138 288140 0.999 + . logic_name=eponine scaffold_52 . biological_region 288165 288170 0.999 - . logic_name=eponine scaffold_52 . biological_region 288200 288203 0.999 + . logic_name=eponine scaffold_52 . biological_region 288229 288235 0.999 - . logic_name=eponine scaffold_52 . biological_region 288272 288275 0.999 + . logic_name=eponine scaffold_52 . biological_region 288285 288289 0.999 + . logic_name=eponine scaffold_52 . biological_region 288288 288294 0.999 - . logic_name=eponine scaffold_52 . biological_region 288318 288319 0.999 + . logic_name=eponine scaffold_52 . biological_region 288368 288372 0.999 + . logic_name=eponine scaffold_52 . biological_region 288410 288417 0.999 - . logic_name=eponine scaffold_52 ensembl protein_coding_gene 281737 282969 . - . ID=Phyra80786;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000057;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 281737 282969 . - . ID=Phyra80786;Parent=Phyra80786;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 281737 282969 . - 0 ID=Phyra80786;Parent=Phyra80786;rank=1 scaffold_52 . exon 281737 282969 . - . ID=Phyra80786.1;Parent=Phyra80786;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 284494 286446 . - . ID=Phyra80787;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000058;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 284494 286446 . - . ID=Phyra80787;Parent=Phyra80787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 284494 286446 . - 0 ID=Phyra80787;Parent=Phyra80787;rank=1 scaffold_52 . exon 284494 286446 . - . ID=Phyra80787.1;Parent=Phyra80787;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 286620 288624 . - . ID=Phyra80788;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000059;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 286620 288624 . - . ID=Phyra80788;Parent=Phyra80788;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 286620 287807 . - 0 ID=Phyra80788;Parent=Phyra80788;rank=2 scaffold_52 . exon 286620 287807 . - . ID=Phyra80788.2;Parent=Phyra80788;constitutive=1;rank=2 scaffold_52 . CDS 287881 288624 . - 0 ID=Phyra80788;Parent=Phyra80788;rank=1 scaffold_52 . exon 287881 288624 . - . ID=Phyra80788.1;Parent=Phyra80788;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 290637 292122 . + . ID=Phyra80789;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000060;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 290637 292122 . + . ID=Phyra80789;Parent=Phyra80789;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 290637 291959 . + 0 ID=Phyra80789;Parent=Phyra80789;rank=1 scaffold_52 . exon 290637 291959 . + . ID=Phyra80789.1;Parent=Phyra80789;constitutive=1;rank=1 scaffold_52 . CDS 292108 292122 . + 0 ID=Phyra80789;Parent=Phyra80789;rank=2 scaffold_52 . exon 292108 292122 . + . ID=Phyra80789.2;Parent=Phyra80789;constitutive=1;rank=2 scaffold_52 ensembl protein_coding_gene 298424 300358 . - . ID=Phyra80790;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000061;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 298424 300358 . - . ID=Phyra80790;Parent=Phyra80790;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 298424 300358 . - 0 ID=Phyra80790;Parent=Phyra80790;rank=1 scaffold_52 . exon 298424 300358 . - . ID=Phyra80790.1;Parent=Phyra80790;constitutive=1;rank=1 scaffold_52 . repeat_region 301035 301054 . ? . description=trf scaffold_52 . repeat_region 303718 303763 . ? . description=dust scaffold_52 . repeat_region 303731 303761 . ? . description=trf scaffold_52 . biological_region 304049 304052 0.999 + . logic_name=eponine scaffold_52 . biological_region 305006 305011 0.999 + . logic_name=eponine scaffold_52 . repeat_region 305007 305046 . ? . description=dust scaffold_52 . biological_region 305274 305277 0.999 - . logic_name=eponine scaffold_52 . repeat_region 305298 305305 . ? . description=dust scaffold_52 . repeat_region 305341 305376 . ? . description=dust scaffold_52 . biological_region 306612 306615 0.999 - . logic_name=eponine scaffold_52 . biological_region 306642 306647 0.999 - . logic_name=eponine scaffold_52 . biological_region 306759 306763 0.999 - . logic_name=eponine scaffold_52 . biological_region 307351 307352 0.999 + . logic_name=eponine scaffold_52 . biological_region 307655 307663 0.999 + . logic_name=eponine scaffold_52 . biological_region 307693 307700 0.999 - . logic_name=eponine scaffold_52 . repeat_region 308946 309034 . ? . description=trf scaffold_52 . repeat_region 308952 308995 . ? . description=trf scaffold_52 . repeat_region 308952 309007 . ? . description=trf scaffold_52 . repeat_region 308967 309027 . ? . description=trf scaffold_52 . repeat_region 308967 309027 . ? . description=dust scaffold_52 ensembl protein_coding_gene 300896 304171 . - . ID=Phyra80791;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000062;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 300896 304171 . - . ID=Phyra80791;Parent=Phyra80791;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 300896 304171 . - 0 ID=Phyra80791;Parent=Phyra80791;rank=1 scaffold_52 . exon 300896 304171 . - . ID=Phyra80791.1;Parent=Phyra80791;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 305053 305829 . + . ID=Phyra80792;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000063;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 305053 305829 . + . ID=Phyra80792;Parent=Phyra80792;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 305053 305272 . + 0 ID=Phyra80792;Parent=Phyra80792;rank=1 scaffold_52 . exon 305053 305272 . + . ID=Phyra80792.1;Parent=Phyra80792;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . CDS 305378 305829 . + 0 ID=Phyra80792;Parent=Phyra80792;rank=2 scaffold_52 . exon 305378 305829 . + . ID=Phyra80792.2;Parent=Phyra80792;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 ensembl protein_coding_gene 306218 306746 . - . ID=Phyra80793;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000064;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 306218 306746 . - . ID=Phyra80793;Parent=Phyra80793;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 306218 306389 . - 0 ID=Phyra80793;Parent=Phyra80793;rank=3 scaffold_52 . exon 306218 306389 . - . ID=Phyra80793.3;Parent=Phyra80793;constitutive=1;ensembl_phase=2;rank=3 scaffold_52 . CDS 306462 306622 . - 0 ID=Phyra80793;Parent=Phyra80793;rank=2 scaffold_52 . exon 306462 306622 . - . ID=Phyra80793.2;Parent=Phyra80793;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_52 . CDS 306690 306746 . - 0 ID=Phyra80793;Parent=Phyra80793;rank=1 scaffold_52 . exon 306690 306746 . - . ID=Phyra80793.1;Parent=Phyra80793;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 307176 311344 . - . ID=Phyra80794;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000065;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 307176 311344 . - . ID=Phyra80794;Parent=Phyra80794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 307176 307774 . - 0 ID=Phyra80794;Parent=Phyra80794;rank=2 scaffold_52 . exon 307176 307774 . - . ID=Phyra80794.2;Parent=Phyra80794;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 307972 311344 . - 0 ID=Phyra80794;Parent=Phyra80794;rank=1 scaffold_52 . exon 307972 311344 . - . ID=Phyra80794.1;Parent=Phyra80794;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 ensembl protein_coding_gene 314263 314967 . - . ID=Phyra71831;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_52000003;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 314263 314967 . - . ID=Phyra71831;Parent=Phyra71831;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 314263 314967 . - 0 ID=Phyra71831;Parent=Phyra71831;rank=1 scaffold_52 . exon 314263 314967 . - . ID=Phyra71831.1;Parent=Phyra71831;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 315117 315816 . + . ID=Phyra80796;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000067;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 315117 315816 . + . ID=Phyra80796;Parent=Phyra80796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 315117 315714 . + 0 ID=Phyra80796;Parent=Phyra80796;rank=1 scaffold_52 . exon 315117 315714 . + . ID=Phyra80796.1;Parent=Phyra80796;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . CDS 315746 315816 . + 0 ID=Phyra80796;Parent=Phyra80796;rank=2 scaffold_52 . exon 315746 315816 . + . ID=Phyra80796.2;Parent=Phyra80796;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 . repeat_region 319266 319274 . ? . description=dust scaffold_52 . biological_region 321149 321152 0.999 + . logic_name=eponine scaffold_52 . biological_region 321181 321189 0.999 - . logic_name=eponine scaffold_52 . biological_region 321250 321255 0.999 - . logic_name=eponine scaffold_52 . biological_region 322128 322134 0.999 + . logic_name=eponine scaffold_52 . biological_region 322497 322498 0.999 + . logic_name=eponine scaffold_52 . repeat_region 323768 323776 . ? . description=dust scaffold_52 ensembl protein_coding_gene 319632 323678 . - . ID=Phyra80797;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000068;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 319632 323678 . - . ID=Phyra80797;Parent=Phyra80797;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 319632 323678 . - 0 ID=Phyra80797;Parent=Phyra80797;rank=1 scaffold_52 . exon 319632 323678 . - . ID=Phyra80797.1;Parent=Phyra80797;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 327539 328781 . + . ID=Phyra80800;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000071;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 327539 328781 . + . ID=Phyra80800;Parent=Phyra80800;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 327539 328049 . + 0 ID=Phyra80800;Parent=Phyra80800;rank=1 scaffold_52 . exon 327539 328049 . + . ID=Phyra80800.1;Parent=Phyra80800;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . CDS 328112 328328 . + 0 ID=Phyra80800;Parent=Phyra80800;rank=2 scaffold_52 . exon 328112 328328 . + . ID=Phyra80800.2;Parent=Phyra80800;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_52 . CDS 328402 328521 . + 0 ID=Phyra80800;Parent=Phyra80800;rank=3 scaffold_52 . exon 328402 328521 . + . ID=Phyra80800.3;Parent=Phyra80800;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_52 . CDS 328595 328781 . + 0 ID=Phyra80800;Parent=Phyra80800;rank=4 scaffold_52 . exon 328595 328781 . + . ID=Phyra80800.4;Parent=Phyra80800;constitutive=1;ensembl_phase=2;rank=4 scaffold_52 ensembl protein_coding_gene 329029 330984 . + . ID=Phyra80801;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000072;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 329029 330984 . + . ID=Phyra80801;Parent=Phyra80801;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 329029 330474 . + 0 ID=Phyra80801;Parent=Phyra80801;rank=1 scaffold_52 . exon 329029 330474 . + . ID=Phyra80801.1;Parent=Phyra80801;constitutive=1;rank=1 scaffold_52 . CDS 330549 330639 . + 0 ID=Phyra80801;Parent=Phyra80801;rank=2 scaffold_52 . CDS 330709 330786 . + 0 ID=Phyra80801;Parent=Phyra80801;rank=3 scaffold_52 . CDS 330861 330984 . + 0 ID=Phyra80801;Parent=Phyra80801;rank=4 scaffold_52 ensembl protein_coding_gene 325343 326375 . + . ID=Phyra95815;biotype=protein_coding;external_name=C_scaffold_52000010;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 325343 326375 . + . ID=Phyra95815;Parent=Phyra95815;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 325343 325408 . + 0 ID=Phyra95815;Parent=Phyra95815;rank=1 scaffold_52 . exon 325343 325408 . + . ID=Phyra95815.1;Parent=Phyra95815;constitutive=1;rank=1 scaffold_52 . CDS 325473 325641 . + 0 ID=Phyra95815;Parent=Phyra95815;rank=2 scaffold_52 . exon 325473 325641 . + . ID=Phyra95815.2;Parent=Phyra95815;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_52 . CDS 325709 325925 . + 0 ID=Phyra95815;Parent=Phyra95815;rank=3 scaffold_52 . exon 325709 325925 . + . ID=Phyra95815.3;Parent=Phyra95815;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_52 . CDS 326004 326123 . + 0 ID=Phyra95815;Parent=Phyra95815;rank=4 scaffold_52 . exon 326004 326123 . + . ID=Phyra95815.4;Parent=Phyra95815;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_52 . CDS 326189 326375 . + 0 ID=Phyra95815;Parent=Phyra95815;rank=5 scaffold_52 . exon 326189 326375 . + . ID=Phyra95815.5;Parent=Phyra95815;constitutive=1;ensembl_phase=2;rank=5 scaffold_52 ensembl protein_coding_gene 326533 327369 . - . ID=Phyra95818;biotype=protein_coding;external_name=C_scaffold_52000013;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 326533 327369 . - . ID=Phyra95818;Parent=Phyra95818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 326533 327369 . - 0 ID=Phyra95818;Parent=Phyra95818;rank=1 scaffold_52 . exon 326533 327369 . - . ID=Phyra95818.1;Parent=Phyra95818;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 331087 333018 . + . ID=Phyra71833;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_52000005;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 331087 333018 . + . ID=Phyra71833;Parent=Phyra71833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 331087 331245 . + 0 ID=Phyra71833;Parent=Phyra71833;rank=1 scaffold_52 . exon 331087 331245 . + . ID=Phyra71833.1;Parent=Phyra71833;constitutive=1;rank=1 scaffold_52 . CDS 331333 331423 . + 0 ID=Phyra71833;Parent=Phyra71833;rank=2 scaffold_52 . exon 331333 331423 . + . ID=Phyra71833.2;Parent=Phyra71833;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_52 . CDS 331499 331699 . + 0 ID=Phyra71833;Parent=Phyra71833;rank=3 scaffold_52 . exon 331499 331699 . + . ID=Phyra71833.3;Parent=Phyra71833;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_52 . CDS 331761 331773 . + 0 ID=Phyra71833;Parent=Phyra71833;rank=4 scaffold_52 . exon 331761 331773 . + . ID=Phyra71833.4;Parent=Phyra71833;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_52 . CDS 331796 331817 . + 0 ID=Phyra71833;Parent=Phyra71833;rank=5 scaffold_52 . exon 331796 331817 . + . ID=Phyra71833.5;Parent=Phyra71833;constitutive=1;ensembl_phase=2;rank=5 scaffold_52 . CDS 331840 333018 . + 0 ID=Phyra71833;Parent=Phyra71833;rank=6 scaffold_52 . exon 331840 333018 . + . ID=Phyra71833.6;Parent=Phyra71833;constitutive=1;rank=6 scaffold_52 . exon 330549 330639 . + . ID=Phyra80801.2;Parent=Phyra80801;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_52 . exon 330709 330786 . + . ID=Phyra80801.3;Parent=Phyra80801;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_52 . exon 330861 330984 . + . ID=Phyra80801.4;Parent=Phyra80801;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_52 ensembl protein_coding_gene 334192 336252 . + . ID=Phyra80803;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000074;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 334192 336252 . + . ID=Phyra80803;Parent=Phyra80803;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 334192 336252 . + 0 ID=Phyra80803;Parent=Phyra80803;rank=1 scaffold_52 . exon 334192 336252 . + . ID=Phyra80803.1;Parent=Phyra80803;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 336842 338458 . + . ID=Phyra80804;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000075;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 336842 338458 . + . ID=Phyra80804;Parent=Phyra80804;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 336842 338458 . + 0 ID=Phyra80804;Parent=Phyra80804;rank=1 scaffold_52 . exon 336842 338458 . + . ID=Phyra80804.1;Parent=Phyra80804;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 338607 340020 . - . ID=Phyra80805;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000076;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 338607 340020 . - . ID=Phyra80805;Parent=Phyra80805;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 338607 338681 . - 0 ID=Phyra80805;Parent=Phyra80805;rank=2 scaffold_52 . exon 338607 338681 . - . ID=Phyra80805.2;Parent=Phyra80805;constitutive=1;rank=2 scaffold_52 . CDS 338752 340020 . - 0 ID=Phyra80805;Parent=Phyra80805;rank=1 scaffold_52 . exon 338752 340020 . - . ID=Phyra80805.1;Parent=Phyra80805;constitutive=1;rank=1 scaffold_52 . biological_region 339776 339778 0.999 + . logic_name=eponine scaffold_52 . biological_region 339791 339798 0.999 - . logic_name=eponine scaffold_52 . biological_region 340005 340011 0.999 - . logic_name=eponine scaffold_52 . repeat_region 342768 342781 . ? . description=dust scaffold_52 . repeat_region 346120 346127 . ? . description=dust scaffold_52 . biological_region 346428 346434 0.999 - . logic_name=eponine scaffold_52 . biological_region 346967 346967 0.999 - . logic_name=eponine scaffold_52 . repeat_region 347851 347866 . ? . description=dust scaffold_52 ensembl tRNA_gene 348980 349051 . + . ID=EPrPRAG00000000121;biotype=tRNA;description=tRNA-Asp for anticodon GUC [Source:TRNASCAN_SE%3BAcc:tRNA-Asp];external_name=tRNA-Asp;logic_name=ncrna_eg scaffold_52 ensembl transcript 348980 349051 . + . ID=EPrPRAT00000000121;Parent=EPrPRAG00000000121;biotype=tRNA;logic_name=ncrna_eg scaffold_52 . exon 348980 349051 . + . ID=EPrPRAE00000000121;Parent=EPrPRAT00000000121;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 344279 345382 . - . ID=Phyra80806;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000077;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 344279 345382 . - . ID=Phyra80806;Parent=Phyra80806;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 344279 344303 . - 0 ID=Phyra80806;Parent=Phyra80806;rank=4 scaffold_52 . exon 344279 344303 . - . ID=Phyra80806.4;Parent=Phyra80806;constitutive=1;ensembl_phase=2;rank=4 scaffold_52 . CDS 344398 344968 . - 0 ID=Phyra80806;Parent=Phyra80806;rank=3 scaffold_52 . exon 344398 344968 . - . ID=Phyra80806.3;Parent=Phyra80806;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_52 . CDS 345014 345104 . - 0 ID=Phyra80806;Parent=Phyra80806;rank=2 scaffold_52 . exon 345014 345104 . - . ID=Phyra80806.2;Parent=Phyra80806;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_52 . CDS 345182 345382 . - 0 ID=Phyra80806;Parent=Phyra80806;rank=1 scaffold_52 . exon 345182 345382 . - . ID=Phyra80806.1;Parent=Phyra80806;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 346237 347138 . - . ID=Phyra80807;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_52000078;logic_name=jgi_phyra1 scaffold_52 ensembl transcript 346237 347138 . - . ID=Phyra80807;Parent=Phyra80807;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_52 . CDS 346237 346648 . - 0 ID=Phyra80807;Parent=Phyra80807;rank=2 scaffold_52 . exon 346237 346648 . - . ID=Phyra80807.2;Parent=Phyra80807;constitutive=1;ensembl_phase=2;rank=2 scaffold_52 . CDS 346777 347138 . - 0 ID=Phyra80807;Parent=Phyra80807;rank=1 scaffold_52 . exon 346777 347138 . - . ID=Phyra80807.1;Parent=Phyra80807;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_51 1 360848 scaffold_51 . repeat_region 3205 3230 . ? . description=trf scaffold_51 . repeat_region 5253 5286 . ? . description=trf scaffold_51 . repeat_region 5263 5286 . ? . description=trf scaffold_51 . repeat_region 5542 5964 . ? . description=dust scaffold_51 . repeat_region 7305 8367 . ? . description=dust scaffold_51 . repeat_region 9252 9567 . ? . description=dust scaffold_51 ensembl protein_coding_gene 500 1546 . - . ID=Phyra71818;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_51000001;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 500 1546 . - . ID=Phyra71818;Parent=Phyra71818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 500 1546 . - 0 ID=Phyra71818;Parent=Phyra71818;rank=1 scaffold_51 . exon 500 1546 . - . ID=Phyra71818.1;Parent=Phyra71818;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 4642 5264 . + . ID=Phyra71819;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_51000002;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 4642 5264 . + . ID=Phyra71819;Parent=Phyra71819;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 4642 4902 . + 0 ID=Phyra71819;Parent=Phyra71819;rank=1 scaffold_51 . exon 4642 4902 . + . ID=Phyra71819.1;Parent=Phyra71819;constitutive=1;rank=1 scaffold_51 . CDS 4974 5264 . + 0 ID=Phyra71819;Parent=Phyra71819;rank=2 scaffold_51 . exon 4974 5264 . + . ID=Phyra71819.2;Parent=Phyra71819;constitutive=1;rank=2 scaffold_51 ensembl protein_coding_gene 5967 7030 . - . ID=Phyra80620;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000003;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 5967 7030 . - . ID=Phyra80620;Parent=Phyra80620;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 5967 6705 . - 0 ID=Phyra80620;Parent=Phyra80620;rank=2 scaffold_51 . exon 5967 6705 . - . ID=Phyra80620.2;Parent=Phyra80620;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_51 . CDS 6832 7030 . - 0 ID=Phyra80620;Parent=Phyra80620;rank=1 scaffold_51 . exon 6832 7030 . - . ID=Phyra80620.1;Parent=Phyra80620;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 ensembl protein_coding_gene 8471 9145 . + . ID=Phyra80621;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000004;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 8471 9145 . + . ID=Phyra80621;Parent=Phyra80621;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 8471 9145 . + 0 ID=Phyra80621;Parent=Phyra80621;rank=1 scaffold_51 . exon 8471 9145 . + . ID=Phyra80621.1;Parent=Phyra80621;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 9699 10281 . - . ID=Phyra80622;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000005;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 9699 10281 . - . ID=Phyra80622;Parent=Phyra80622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 9699 9916 . - 0 ID=Phyra80622;Parent=Phyra80622;rank=3 scaffold_51 . exon 9699 9916 . - . ID=Phyra80622.3;Parent=Phyra80622;constitutive=1;ensembl_phase=1;rank=3 scaffold_51 . CDS 10078 10149 . - 0 ID=Phyra80622;Parent=Phyra80622;rank=2 scaffold_51 . CDS 10203 10281 . - 0 ID=Phyra80622;Parent=Phyra80622;rank=1 scaffold_51 . exon 10078 10149 . - . ID=Phyra80622.2;Parent=Phyra80622;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_51 . exon 10203 10281 . - . ID=Phyra80622.1;Parent=Phyra80622;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 ensembl protein_coding_gene 10610 13049 . + . ID=Phyra80623;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000006;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 10610 13049 . + . ID=Phyra80623;Parent=Phyra80623;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 10610 10749 . + 0 ID=Phyra80623;Parent=Phyra80623;rank=1 scaffold_51 . exon 10610 10749 . + . ID=Phyra80623.1;Parent=Phyra80623;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 . CDS 10814 13049 . + 0 ID=Phyra80623;Parent=Phyra80623;rank=2 scaffold_51 . exon 10814 13049 . + . ID=Phyra80623.2;Parent=Phyra80623;constitutive=1;ensembl_phase=2;rank=2 scaffold_51 . repeat_region 13126 19696 . ? . description=dust scaffold_51 . repeat_region 21120 21169 . ? . description=dust scaffold_51 . biological_region 21290 21291 0.999 + . logic_name=eponine scaffold_51 . biological_region 21309 21311 0.999 - . logic_name=eponine scaffold_51 . biological_region 21340 21342 0.999 + . logic_name=eponine scaffold_51 . biological_region 21396 21401 0.999 - . logic_name=eponine scaffold_51 . biological_region 22533 22537 0.999 + . logic_name=eponine scaffold_51 . biological_region 22566 22568 0.999 + . logic_name=eponine scaffold_51 . biological_region 22794 22795 0.999 + . logic_name=eponine scaffold_51 . biological_region 23742 23744 0.999 + . logic_name=eponine scaffold_51 . repeat_region 25804 25812 . ? . description=dust scaffold_51 . biological_region 26295 26295 0.999 + . logic_name=eponine scaffold_51 . biological_region 26480 26486 0.999 - . logic_name=eponine scaffold_51 . biological_region 26592 26600 0.999 - . logic_name=eponine scaffold_51 . biological_region 26653 26654 0.999 + . logic_name=eponine scaffold_51 . biological_region 26665 26668 0.999 - . logic_name=eponine scaffold_51 . biological_region 26722 26722 0.999 + . logic_name=eponine scaffold_51 . biological_region 26748 26751 0.999 - . logic_name=eponine scaffold_51 . biological_region 26803 26805 0.999 + . logic_name=eponine scaffold_51 . repeat_region 27144 27151 . ? . description=dust scaffold_51 ensembl protein_coding_gene 21339 23669 . + . ID=Phyra80624;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000007;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 21339 23669 . + . ID=Phyra80624;Parent=Phyra80624;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 21339 23669 . + 0 ID=Phyra80624;Parent=Phyra80624;rank=1 scaffold_51 . exon 21339 23669 . + . ID=Phyra80624.1;Parent=Phyra80624;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 23975 24883 . - . ID=Phyra80625;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000008;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 23975 24883 . - . ID=Phyra80625;Parent=Phyra80625;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 23975 24883 . - 0 ID=Phyra80625;Parent=Phyra80625;rank=1 scaffold_51 . exon 23975 24883 . - . ID=Phyra80625.1;Parent=Phyra80625;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 27427 29499 . + . ID=Phyra80626;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000009;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 27427 29499 . + . ID=Phyra80626;Parent=Phyra80626;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 27427 27768 . + 0 ID=Phyra80626;Parent=Phyra80626;rank=1 scaffold_51 . exon 27427 27768 . + . ID=Phyra80626.1;Parent=Phyra80626;constitutive=1;rank=1 scaffold_51 . CDS 27922 28246 . + 0 ID=Phyra80626;Parent=Phyra80626;rank=2 scaffold_51 . exon 27922 28246 . + . ID=Phyra80626.2;Parent=Phyra80626;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_51 . CDS 28520 28701 . + 0 ID=Phyra80626;Parent=Phyra80626;rank=3 scaffold_51 . exon 28520 28701 . + . ID=Phyra80626.3;Parent=Phyra80626;constitutive=1;ensembl_phase=1;rank=3 scaffold_51 . CDS 28765 29025 . + 0 ID=Phyra80626;Parent=Phyra80626;rank=4 scaffold_51 . exon 28765 29025 . + . ID=Phyra80626.4;Parent=Phyra80626;constitutive=1;rank=4 scaffold_51 . CDS 29098 29499 . + 0 ID=Phyra80626;Parent=Phyra80626;rank=5 scaffold_51 . exon 29098 29499 . + . ID=Phyra80626.5;Parent=Phyra80626;constitutive=1;rank=5 scaffold_51 . repeat_region 38030 38062 . ? . description=trf scaffold_51 . repeat_region 38243 38268 . ? . description=trf scaffold_51 ensembl protein_coding_gene 29864 30370 . + . ID=Phyra80627;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000010;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 29864 30370 . + . ID=Phyra80627;Parent=Phyra80627;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 29864 30370 . + 0 ID=Phyra80627;Parent=Phyra80627;rank=1 scaffold_51 . exon 29864 30370 . + . ID=Phyra80627.1;Parent=Phyra80627;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 35897 36683 . - . ID=Phyra80630;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000013;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 35897 36683 . - . ID=Phyra80630;Parent=Phyra80630;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 35897 35925 . - 0 ID=Phyra80630;Parent=Phyra80630;rank=3 scaffold_51 . exon 35897 35925 . - . ID=Phyra80630.3;Parent=Phyra80630;constitutive=1;ensembl_phase=1;rank=3 scaffold_51 . CDS 36064 36119 . - 0 ID=Phyra80630;Parent=Phyra80630;rank=2 scaffold_51 . exon 36064 36119 . - . ID=Phyra80630.2;Parent=Phyra80630;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_51 . CDS 36325 36683 . - 0 ID=Phyra80630;Parent=Phyra80630;rank=1 scaffold_51 . exon 36325 36683 . - . ID=Phyra80630.1;Parent=Phyra80630;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 ensembl protein_coding_gene 37961 38923 . - . ID=Phyra80631;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000014;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 37961 38923 . - . ID=Phyra80631;Parent=Phyra80631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 37961 38923 . - 0 ID=Phyra80631;Parent=Phyra80631;rank=1 scaffold_51 . exon 37961 38923 . - . ID=Phyra80631.1;Parent=Phyra80631;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 30497 32238 . - . ID=Phyra95776;biotype=protein_coding;external_name=C_scaffold_51000004;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 30497 32238 . - . ID=Phyra95776;Parent=Phyra95776;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 30497 31430 . - 0 ID=Phyra95776;Parent=Phyra95776;rank=4 scaffold_51 . exon 30497 31430 . - . ID=Phyra95776.4;Parent=Phyra95776;constitutive=1;ensembl_phase=2;rank=4 scaffold_51 . CDS 31584 31694 . - 0 ID=Phyra95776;Parent=Phyra95776;rank=3 scaffold_51 . exon 31584 31694 . - . ID=Phyra95776.3;Parent=Phyra95776;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_51 . CDS 31731 32131 . - 0 ID=Phyra95776;Parent=Phyra95776;rank=2 scaffold_51 . exon 31731 32131 . - . ID=Phyra95776.2;Parent=Phyra95776;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_51 . CDS 32200 32238 . - 0 ID=Phyra95776;Parent=Phyra95776;rank=1 scaffold_51 . exon 32200 32238 . - . ID=Phyra95776.1;Parent=Phyra95776;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 32881 33825 . - . ID=Phyra95777;biotype=protein_coding;external_name=C_scaffold_51000005;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 32881 33825 . - . ID=Phyra95777;Parent=Phyra95777;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 32881 33825 . - 0 ID=Phyra95777;Parent=Phyra95777;rank=1 scaffold_51 . exon 32881 33825 . - . ID=Phyra95777.1;Parent=Phyra95777;constitutive=1;rank=1 scaffold_51 . repeat_region 43399 43408 . ? . description=dust scaffold_51 ensembl protein_coding_gene 39676 40668 . - . ID=Phyra80632;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000015;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 39676 40668 . - . ID=Phyra80632;Parent=Phyra80632;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 39676 40668 . - 0 ID=Phyra80632;Parent=Phyra80632;rank=1 scaffold_51 . exon 39676 40668 . - . ID=Phyra80632.1;Parent=Phyra80632;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 45446 47482 . + . ID=Phyra80633;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000016;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 45446 47482 . + . ID=Phyra80633;Parent=Phyra80633;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 45446 47482 . + 0 ID=Phyra80633;Parent=Phyra80633;rank=1 scaffold_51 . exon 45446 47482 . + . ID=Phyra80633.1;Parent=Phyra80633;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 48060 49562 . + . ID=Phyra80634;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000017;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 48060 49562 . + . ID=Phyra80634;Parent=Phyra80634;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 48060 49562 . + 0 ID=Phyra80634;Parent=Phyra80634;rank=1 scaffold_51 . exon 48060 49562 . + . ID=Phyra80634.1;Parent=Phyra80634;constitutive=1;rank=1 scaffold_51 . biological_region 48908 48911 0.999 - . logic_name=eponine scaffold_51 . repeat_region 50367 50395 . ? . description=trf scaffold_51 . biological_region 52684 52684 0.999 - . logic_name=eponine scaffold_51 . biological_region 53201 53206 0.999 + . logic_name=eponine scaffold_51 . biological_region 53302 53304 0.999 - . logic_name=eponine scaffold_51 ensembl protein_coding_gene 50276 51739 . + . ID=Phyra80635;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000018;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 50276 51739 . + . ID=Phyra80635;Parent=Phyra80635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 50276 51739 . + 0 ID=Phyra80635;Parent=Phyra80635;rank=1 scaffold_51 . exon 50276 51739 . + . ID=Phyra80635.1;Parent=Phyra80635;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 51904 53472 . - . ID=Phyra80636;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000019;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 51904 53472 . - . ID=Phyra80636;Parent=Phyra80636;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 51904 53472 . - 0 ID=Phyra80636;Parent=Phyra80636;rank=1 scaffold_51 . exon 51904 53472 . - . ID=Phyra80636.1;Parent=Phyra80636;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 56644 57072 . - . ID=Phyra80637;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000020;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 56644 57072 . - . ID=Phyra80637;Parent=Phyra80637;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 56644 57072 . - 0 ID=Phyra80637;Parent=Phyra80637;rank=1 scaffold_51 . exon 56644 57072 . - . ID=Phyra80637.1;Parent=Phyra80637;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 57390 59279 . + . ID=Phyra80638;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000021;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 57390 59279 . + . ID=Phyra80638;Parent=Phyra80638;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 57390 59279 . + 0 ID=Phyra80638;Parent=Phyra80638;rank=1 scaffold_51 . exon 57390 59279 . + . ID=Phyra80638.1;Parent=Phyra80638;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 59980 60913 . - . ID=Phyra80639;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000022;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 59980 60913 . - . ID=Phyra80639;Parent=Phyra80639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 59980 60387 . - 0 ID=Phyra80639;Parent=Phyra80639;rank=2 scaffold_51 . exon 59980 60387 . - . ID=Phyra80639.2;Parent=Phyra80639;constitutive=1;rank=2 scaffold_51 . CDS 60476 60913 . - 0 ID=Phyra80639;Parent=Phyra80639;rank=1 scaffold_51 . exon 60476 60913 . - . ID=Phyra80639.1;Parent=Phyra80639;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 61490 66112 . + . ID=Phyra80640;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000023;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 61490 66112 . + . ID=Phyra80640;Parent=Phyra80640;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 61490 62081 . + 0 ID=Phyra80640;Parent=Phyra80640;rank=1 scaffold_51 . exon 61490 62081 . + . ID=Phyra80640.1;Parent=Phyra80640;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 62406 64226 . + 0 ID=Phyra80640;Parent=Phyra80640;rank=2 scaffold_51 . exon 62406 64226 . + . ID=Phyra80640.2;Parent=Phyra80640;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 64307 64734 . + 0 ID=Phyra80640;Parent=Phyra80640;rank=3 scaffold_51 . exon 64307 64734 . + . ID=Phyra80640.3;Parent=Phyra80640;constitutive=1;ensembl_phase=1;rank=3 scaffold_51 . CDS 64799 65010 . + 0 ID=Phyra80640;Parent=Phyra80640;rank=4 scaffold_51 . exon 64799 65010 . + . ID=Phyra80640.4;Parent=Phyra80640;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_51 . CDS 65071 66112 . + 0 ID=Phyra80640;Parent=Phyra80640;rank=5 scaffold_51 . exon 65071 66112 . + . ID=Phyra80640.5;Parent=Phyra80640;constitutive=1;ensembl_phase=2;rank=5 scaffold_51 ensembl protein_coding_gene 66227 67594 . - . ID=Phyra80641;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000024;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 66227 67594 . - . ID=Phyra80641;Parent=Phyra80641;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 66227 67594 . - 0 ID=Phyra80641;Parent=Phyra80641;rank=1 scaffold_51 . exon 66227 67594 . - . ID=Phyra80641.1;Parent=Phyra80641;constitutive=1;rank=1 scaffold_51 . repeat_region 70889 70896 . ? . description=dust scaffold_51 . biological_region 70916 70920 0.999 + . logic_name=eponine scaffold_51 . repeat_region 71676 71699 . ? . description=trf scaffold_51 . biological_region 71771 71776 0.999 + . logic_name=eponine scaffold_51 . biological_region 71844 71850 0.999 - . logic_name=eponine scaffold_51 . repeat_region 73385 73454 . ? . description=trf scaffold_51 . repeat_region 73438 73479 . ? . description=trf scaffold_51 . repeat_region 74233 74301 . ? . description=trf scaffold_51 . repeat_region 75482 75672 . ? . description=trf scaffold_51 . repeat_region 75482 76231 . ? . description=trf scaffold_51 . repeat_region 75582 76231 . ? . description=trf scaffold_51 . repeat_region 76099 76180 . ? . description=trf scaffold_51 . biological_region 76855 76862 0.999 - . logic_name=eponine scaffold_51 . repeat_region 77286 77334 . ? . description=trf scaffold_51 ensembl protein_coding_gene 68538 68873 . - . ID=Phyra80642;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000025;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 68538 68873 . - . ID=Phyra80642;Parent=Phyra80642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 68538 68873 . - 0 ID=Phyra80642;Parent=Phyra80642;rank=1 scaffold_51 . exon 68538 68873 . - . ID=Phyra80642.1;Parent=Phyra80642;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 69418 70533 . + . ID=Phyra80643;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000026;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 69418 70533 . + . ID=Phyra80643;Parent=Phyra80643;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 69418 69604 . + 0 ID=Phyra80643;Parent=Phyra80643;rank=1 scaffold_51 . exon 69418 69604 . + . ID=Phyra80643.1;Parent=Phyra80643;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 69687 69812 . + 0 ID=Phyra80643;Parent=Phyra80643;rank=2 scaffold_51 . exon 69687 69812 . + . ID=Phyra80643.2;Parent=Phyra80643;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 69899 70533 . + 0 ID=Phyra80643;Parent=Phyra80643;rank=3 scaffold_51 . exon 69899 70533 . + . ID=Phyra80643.3;Parent=Phyra80643;constitutive=1;ensembl_phase=1;rank=3 scaffold_51 ensembl protein_coding_gene 71744 82858 . + . ID=Phyra80644;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000027;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 71744 82858 . + . ID=Phyra80644;Parent=Phyra80644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 71744 77545 . + 0 ID=Phyra80644;Parent=Phyra80644;rank=1 scaffold_51 . exon 71744 77545 . + . ID=Phyra80644.1;Parent=Phyra80644;constitutive=1;rank=1 scaffold_51 . CDS 77776 77816 . + 0 ID=Phyra80644;Parent=Phyra80644;rank=2 scaffold_51 . exon 77776 77816 . + . ID=Phyra80644.2;Parent=Phyra80644;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_51 . CDS 77911 80173 . + 0 ID=Phyra80644;Parent=Phyra80644;rank=3 scaffold_51 . exon 77911 80173 . + . ID=Phyra80644.3;Parent=Phyra80644;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 80467 80562 . + 0 ID=Phyra80644;Parent=Phyra80644;rank=4 scaffold_51 . CDS 81033 81836 . + 0 ID=Phyra80644;Parent=Phyra80644;rank=5 scaffold_51 . CDS 81904 82249 . + 0 ID=Phyra80644;Parent=Phyra80644;rank=6 scaffold_51 . CDS 82317 82858 . + 0 ID=Phyra80644;Parent=Phyra80644;rank=7 scaffold_51 . exon 80467 80562 . + . ID=Phyra80644.4;Parent=Phyra80644;constitutive=1;rank=4 scaffold_51 . exon 81033 81836 . + . ID=Phyra80644.5;Parent=Phyra80644;constitutive=1;rank=5 scaffold_51 . exon 81904 82249 . + . ID=Phyra80644.6;Parent=Phyra80644;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_51 . exon 82317 82858 . + . ID=Phyra80644.7;Parent=Phyra80644;constitutive=1;ensembl_phase=1;rank=7 scaffold_51 ensembl protein_coding_gene 83901 85182 . + . ID=Phyra80645;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000028;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 83901 85182 . + . ID=Phyra80645;Parent=Phyra80645;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 83901 83966 . + 0 ID=Phyra80645;Parent=Phyra80645;rank=1 scaffold_51 . exon 83901 83966 . + . ID=Phyra80645.1;Parent=Phyra80645;constitutive=1;rank=1 scaffold_51 . CDS 84049 85182 . + 0 ID=Phyra80645;Parent=Phyra80645;rank=2 scaffold_51 . exon 84049 85182 . + . ID=Phyra80645.2;Parent=Phyra80645;constitutive=1;rank=2 scaffold_51 ensembl protein_coding_gene 86100 87679 . + . ID=Phyra80646;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000029;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 86100 87679 . + . ID=Phyra80646;Parent=Phyra80646;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 86100 86174 . + 0 ID=Phyra80646;Parent=Phyra80646;rank=1 scaffold_51 . exon 86100 86174 . + . ID=Phyra80646.1;Parent=Phyra80646;constitutive=1;rank=1 scaffold_51 . CDS 86237 87679 . + 0 ID=Phyra80646;Parent=Phyra80646;rank=2 scaffold_51 . exon 86237 87679 . + . ID=Phyra80646.2;Parent=Phyra80646;constitutive=1;rank=2 scaffold_51 . biological_region 88955 88961 0.999 + . logic_name=eponine scaffold_51 . biological_region 88977 88981 0.999 + . logic_name=eponine scaffold_51 . biological_region 88982 88985 0.999 - . logic_name=eponine scaffold_51 . biological_region 89065 89068 0.999 - . logic_name=eponine scaffold_51 . biological_region 89076 89076 0.999 + . logic_name=eponine scaffold_51 . biological_region 93180 93185 0.999 + . logic_name=eponine scaffold_51 . biological_region 93306 93310 0.999 - . logic_name=eponine scaffold_51 . biological_region 93341 93348 0.999 - . logic_name=eponine scaffold_51 . repeat_region 93983 94018 . ? . description=dust scaffold_51 . repeat_region 94558 94650 . + . description=(CTG)n scaffold_51 . repeat_region 94600 94647 . ? . description=dust scaffold_51 . repeat_region 94620 94647 . ? . description=trf scaffold_51 . repeat_region 94620 94650 . ? . description=trf scaffold_51 . biological_region 95258 95259 0.999 + . logic_name=eponine scaffold_51 ensembl protein_coding_gene 94914 95885 . - . ID=Phyra50314;biotype=protein_coding;external_name=gwEuk.51.99.1;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 94914 95885 . - . ID=Phyra50314;Parent=Phyra50314;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 94914 95497 . - 0 ID=Phyra50314;Parent=Phyra50314;rank=3 scaffold_51 . exon 94914 95497 . - . ID=Phyra50314.3;Parent=Phyra50314;constitutive=1;ensembl_phase=1;rank=3 scaffold_51 . CDS 95605 95733 . - 0 ID=Phyra50314;Parent=Phyra50314;rank=2 scaffold_51 . exon 95605 95733 . - . ID=Phyra50314.2;Parent=Phyra50314;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 95807 95885 . - 0 ID=Phyra50314;Parent=Phyra50314;rank=1 scaffold_51 . exon 95807 95885 . - . ID=Phyra50314.1;Parent=Phyra50314;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 ensembl protein_coding_gene 88839 90240 . + . ID=Phyra80647;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000030;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 88839 90240 . + . ID=Phyra80647;Parent=Phyra80647;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 88839 89663 . + 0 ID=Phyra80647;Parent=Phyra80647;rank=1 scaffold_51 . exon 88839 89663 . + . ID=Phyra80647.1;Parent=Phyra80647;constitutive=1;rank=1 scaffold_51 . CDS 89723 89963 . + 0 ID=Phyra80647;Parent=Phyra80647;rank=2 scaffold_51 . exon 89723 89963 . + . ID=Phyra80647.2;Parent=Phyra80647;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_51 . CDS 90044 90240 . + 0 ID=Phyra80647;Parent=Phyra80647;rank=3 scaffold_51 . exon 90044 90240 . + . ID=Phyra80647.3;Parent=Phyra80647;constitutive=1;ensembl_phase=1;rank=3 scaffold_51 ensembl protein_coding_gene 91845 93375 . + . ID=Phyra80648;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000031;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 91845 93375 . + . ID=Phyra80648;Parent=Phyra80648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 91845 92937 . + 0 ID=Phyra80648;Parent=Phyra80648;rank=1 scaffold_51 . exon 91845 92937 . + . ID=Phyra80648.1;Parent=Phyra80648;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 93011 93375 . + 0 ID=Phyra80648;Parent=Phyra80648;rank=2 scaffold_51 . exon 93011 93375 . + . ID=Phyra80648.2;Parent=Phyra80648;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 ensembl protein_coding_gene 96276 99131 . + . ID=Phyra80650;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000033;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 96276 99131 . + . ID=Phyra80650;Parent=Phyra80650;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 96276 96969 . + 0 ID=Phyra80650;Parent=Phyra80650;rank=1 scaffold_51 . exon 96276 96969 . + . ID=Phyra80650.1;Parent=Phyra80650;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 97047 98002 . + 0 ID=Phyra80650;Parent=Phyra80650;rank=2 scaffold_51 . exon 97047 98002 . + . ID=Phyra80650.2;Parent=Phyra80650;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 98065 98190 . + 0 ID=Phyra80650;Parent=Phyra80650;rank=3 scaffold_51 . CDS 98286 99131 . + 0 ID=Phyra80650;Parent=Phyra80650;rank=4 scaffold_51 ensembl protein_coding_gene 100594 103294 . + . ID=Phyra71820;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_51000003;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 100594 103294 . + . ID=Phyra71820;Parent=Phyra71820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 100594 100636 . + 0 ID=Phyra71820;Parent=Phyra71820;rank=1 scaffold_51 . exon 100594 100636 . + . ID=Phyra71820.1;Parent=Phyra71820;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 100664 100775 . + 0 ID=Phyra71820;Parent=Phyra71820;rank=2 scaffold_51 . exon 100664 100775 . + . ID=Phyra71820.2;Parent=Phyra71820;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_51 . CDS 100852 101021 . + 0 ID=Phyra71820;Parent=Phyra71820;rank=3 scaffold_51 . exon 100852 101021 . + . ID=Phyra71820.3;Parent=Phyra71820;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 101093 101715 . + 0 ID=Phyra71820;Parent=Phyra71820;rank=4 scaffold_51 . exon 101093 101715 . + . ID=Phyra71820.4;Parent=Phyra71820;constitutive=1;ensembl_phase=1;rank=4 scaffold_51 . CDS 101782 101963 . + 0 ID=Phyra71820;Parent=Phyra71820;rank=5 scaffold_51 . exon 101782 101963 . + . ID=Phyra71820.5;Parent=Phyra71820;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_51 . CDS 102051 102137 . + 0 ID=Phyra71820;Parent=Phyra71820;rank=6 scaffold_51 . exon 102051 102137 . + . ID=Phyra71820.6;Parent=Phyra71820;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_51 . CDS 102203 102438 . + 0 ID=Phyra71820;Parent=Phyra71820;rank=7 scaffold_51 . exon 102203 102438 . + . ID=Phyra71820.7;Parent=Phyra71820;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_51 . CDS 102508 102626 . + 0 ID=Phyra71820;Parent=Phyra71820;rank=8 scaffold_51 . exon 102508 102626 . + . ID=Phyra71820.8;Parent=Phyra71820;constitutive=1;ensembl_phase=1;rank=8 scaffold_51 . CDS 102689 102796 . + 0 ID=Phyra71820;Parent=Phyra71820;rank=9 scaffold_51 . exon 102689 102796 . + . ID=Phyra71820.9;Parent=Phyra71820;constitutive=1;rank=9 scaffold_51 . CDS 102873 102956 . + 0 ID=Phyra71820;Parent=Phyra71820;rank=10 scaffold_51 . exon 102873 102956 . + . ID=Phyra71820.10;Parent=Phyra71820;constitutive=1;rank=10 scaffold_51 . CDS 103040 103294 . + 0 ID=Phyra71820;Parent=Phyra71820;rank=11 scaffold_51 . exon 103040 103294 . + . ID=Phyra71820.11;Parent=Phyra71820;constitutive=1;rank=11 scaffold_51 . exon 98065 98190 . + . ID=Phyra80650.3;Parent=Phyra80650;constitutive=1;rank=3 scaffold_51 . exon 98286 99131 . + . ID=Phyra80650.4;Parent=Phyra80650;constitutive=1;rank=4 scaffold_51 ensembl protein_coding_gene 103470 106140 . + . ID=Phyra80652;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000035;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 103470 106140 . + . ID=Phyra80652;Parent=Phyra80652;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 103470 104521 . + 0 ID=Phyra80652;Parent=Phyra80652;rank=1 scaffold_51 . exon 103470 104521 . + . ID=Phyra80652.1;Parent=Phyra80652;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 . CDS 104889 106140 . + 0 ID=Phyra80652;Parent=Phyra80652;rank=2 scaffold_51 . exon 104889 106140 . + . ID=Phyra80652.2;Parent=Phyra80652;constitutive=1;ensembl_phase=2;rank=2 scaffold_51 . repeat_region 114657 114683 . ? . description=dust scaffold_51 . repeat_region 114824 114885 . ? . description=dust scaffold_51 ensembl protein_coding_gene 111326 112526 . - . ID=Phyra80653;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000036;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 111326 112526 . - . ID=Phyra80653;Parent=Phyra80653;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 111326 111583 . - 0 ID=Phyra80653;Parent=Phyra80653;rank=3 scaffold_51 . exon 111326 111583 . - . ID=Phyra80653.3;Parent=Phyra80653;constitutive=1;rank=3 scaffold_51 . CDS 111678 111785 . - 0 ID=Phyra80653;Parent=Phyra80653;rank=2 scaffold_51 . exon 111678 111785 . - . ID=Phyra80653.2;Parent=Phyra80653;constitutive=1;rank=2 scaffold_51 . CDS 111852 112526 . - 0 ID=Phyra80653;Parent=Phyra80653;rank=1 scaffold_51 . exon 111852 112526 . - . ID=Phyra80653.1;Parent=Phyra80653;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 112788 113951 . + . ID=Phyra80654;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000037;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 112788 113951 . + . ID=Phyra80654;Parent=Phyra80654;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 112788 113334 . + 0 ID=Phyra80654;Parent=Phyra80654;rank=1 scaffold_51 . exon 112788 113334 . + . ID=Phyra80654.1;Parent=Phyra80654;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 113452 113951 . + 0 ID=Phyra80654;Parent=Phyra80654;rank=2 scaffold_51 . exon 113452 113951 . + . ID=Phyra80654.2;Parent=Phyra80654;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 ensembl protein_coding_gene 114249 116380 . + . ID=Phyra80655;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000038;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 114249 116380 . + . ID=Phyra80655;Parent=Phyra80655;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 114249 114622 . + 0 ID=Phyra80655;Parent=Phyra80655;rank=1 scaffold_51 . exon 114249 114622 . + . ID=Phyra80655.1;Parent=Phyra80655;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 . CDS 114686 114813 . + 0 ID=Phyra80655;Parent=Phyra80655;rank=2 scaffold_51 . exon 114686 114813 . + . ID=Phyra80655.2;Parent=Phyra80655;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_51 . CDS 114888 115636 . + 0 ID=Phyra80655;Parent=Phyra80655;rank=3 scaffold_51 . exon 114888 115636 . + . ID=Phyra80655.3;Parent=Phyra80655;constitutive=1;ensembl_phase=1;rank=3 scaffold_51 . CDS 115705 115805 . + 0 ID=Phyra80655;Parent=Phyra80655;rank=4 scaffold_51 . exon 115705 115805 . + . ID=Phyra80655.4;Parent=Phyra80655;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_51 . CDS 115875 116109 . + 0 ID=Phyra80655;Parent=Phyra80655;rank=5 scaffold_51 . exon 115875 116109 . + . ID=Phyra80655.5;Parent=Phyra80655;constitutive=1;ensembl_phase=2;rank=5 scaffold_51 . CDS 116183 116380 . + 0 ID=Phyra80655;Parent=Phyra80655;rank=6 scaffold_51 . exon 116183 116380 . + . ID=Phyra80655.6;Parent=Phyra80655;constitutive=1;rank=6 scaffold_51 ensembl protein_coding_gene 116602 119472 . + . ID=Phyra80656;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000039;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 116602 119472 . + . ID=Phyra80656;Parent=Phyra80656;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 116602 119472 . + 0 ID=Phyra80656;Parent=Phyra80656;rank=1 scaffold_51 . exon 116602 119472 . + . ID=Phyra80656.1;Parent=Phyra80656;constitutive=1;rank=1 scaffold_51 . biological_region 119599 119600 0.999 + . logic_name=eponine scaffold_51 . biological_region 119695 119695 0.999 + . logic_name=eponine scaffold_51 . biological_region 120777 120781 0.999 - . logic_name=eponine scaffold_51 . biological_region 120843 120845 0.999 - . logic_name=eponine scaffold_51 . biological_region 125223 125224 0.999 + . logic_name=eponine scaffold_51 . biological_region 125790 125793 0.999 + . logic_name=eponine scaffold_51 ensembl protein_coding_gene 119683 120291 . - . ID=Phyra50328;biotype=protein_coding;external_name=gwEuk.51.113.1;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 119683 120291 . - . ID=Phyra50328;Parent=Phyra50328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 119683 120291 . - 0 ID=Phyra50328;Parent=Phyra50328;rank=1 scaffold_51 . exon 119683 120291 . - . ID=Phyra50328.1;Parent=Phyra50328;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 120661 122533 . + . ID=Phyra80658;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000041;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 120661 122533 . + . ID=Phyra80658;Parent=Phyra80658;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 120661 120968 . + 0 ID=Phyra80658;Parent=Phyra80658;rank=1 scaffold_51 . exon 120661 120968 . + . ID=Phyra80658.1;Parent=Phyra80658;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 . CDS 121029 122388 . + 0 ID=Phyra80658;Parent=Phyra80658;rank=2 scaffold_51 . exon 121029 122388 . + . ID=Phyra80658.2;Parent=Phyra80658;constitutive=1;ensembl_phase=2;rank=2 scaffold_51 . CDS 122519 122533 . + 0 ID=Phyra80658;Parent=Phyra80658;rank=3 scaffold_51 . exon 122519 122533 . + . ID=Phyra80658.3;Parent=Phyra80658;constitutive=1;rank=3 scaffold_51 ensembl protein_coding_gene 123707 126997 . - . ID=Phyra80659;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000042;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 123707 126997 . - . ID=Phyra80659;Parent=Phyra80659;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 123707 125595 . - 0 ID=Phyra80659;Parent=Phyra80659;rank=4 scaffold_51 . exon 123707 125595 . - . ID=Phyra80659.4;Parent=Phyra80659;constitutive=1;ensembl_phase=1;rank=4 scaffold_51 . CDS 125733 125989 . - 0 ID=Phyra80659;Parent=Phyra80659;rank=3 scaffold_51 . exon 125733 125989 . - . ID=Phyra80659.3;Parent=Phyra80659;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 126024 126389 . - 0 ID=Phyra80659;Parent=Phyra80659;rank=2 scaffold_51 . exon 126024 126389 . - . ID=Phyra80659.2;Parent=Phyra80659;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_51 . CDS 126444 126997 . - 0 ID=Phyra80659;Parent=Phyra80659;rank=1 scaffold_51 . exon 126444 126997 . - . ID=Phyra80659.1;Parent=Phyra80659;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 ensembl protein_coding_gene 127121 127871 . - . ID=Phyra71822;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_51000005;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 127121 127871 . - . ID=Phyra71822;Parent=Phyra71822;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 127121 127172 . - 0 ID=Phyra71822;Parent=Phyra71822;rank=2 scaffold_51 . exon 127121 127172 . - . ID=Phyra71822.2;Parent=Phyra71822;constitutive=1;ensembl_phase=2;rank=2 scaffold_51 . CDS 127213 127871 . - 0 ID=Phyra71822;Parent=Phyra71822;rank=1 scaffold_51 . exon 127213 127871 . - . ID=Phyra71822.1;Parent=Phyra71822;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 ensembl protein_coding_gene 128091 129269 . + . ID=Phyra80661;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000044;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 128091 129269 . + . ID=Phyra80661;Parent=Phyra80661;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 128091 128229 . + 0 ID=Phyra80661;Parent=Phyra80661;rank=1 scaffold_51 . exon 128091 128229 . + . ID=Phyra80661.1;Parent=Phyra80661;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 128347 128864 . + 0 ID=Phyra80661;Parent=Phyra80661;rank=2 scaffold_51 . exon 128347 128864 . + . ID=Phyra80661.2;Parent=Phyra80661;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 128940 129020 . + 0 ID=Phyra80661;Parent=Phyra80661;rank=3 scaffold_51 . exon 128940 129020 . + . ID=Phyra80661.3;Parent=Phyra80661;constitutive=1;rank=3 scaffold_51 . CDS 129081 129269 . + 0 ID=Phyra80661;Parent=Phyra80661;rank=4 scaffold_51 . exon 129081 129269 . + . ID=Phyra80661.4;Parent=Phyra80661;constitutive=1;rank=4 scaffold_51 ensembl protein_coding_gene 130511 131680 . - . ID=Phyra80662;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000045;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 130511 131680 . - . ID=Phyra80662;Parent=Phyra80662;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 130511 131680 . - 0 ID=Phyra80662;Parent=Phyra80662;rank=1 scaffold_51 . exon 130511 131680 . - . ID=Phyra80662.1;Parent=Phyra80662;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 132802 133920 . - . ID=Phyra80663;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000046;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 132802 133920 . - . ID=Phyra80663;Parent=Phyra80663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 132802 133920 . - 0 ID=Phyra80663;Parent=Phyra80663;rank=1 scaffold_51 . exon 132802 133920 . - . ID=Phyra80663.1;Parent=Phyra80663;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 134176 135399 . - . ID=Phyra80664;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000047;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 134176 135399 . - . ID=Phyra80664;Parent=Phyra80664;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 134176 135399 . - 0 ID=Phyra80664;Parent=Phyra80664;rank=1 scaffold_51 . exon 134176 135399 . - . ID=Phyra80664.1;Parent=Phyra80664;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 136300 140023 . + . ID=Phyra80665;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000048;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 136300 140023 . + . ID=Phyra80665;Parent=Phyra80665;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 136300 137945 . + 0 ID=Phyra80665;Parent=Phyra80665;rank=1 scaffold_51 . exon 136300 137945 . + . ID=Phyra80665.1;Parent=Phyra80665;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 . CDS 138035 138035 . + 0 ID=Phyra80665;Parent=Phyra80665;rank=2 scaffold_51 . CDS 138239 140023 . + 0 ID=Phyra80665;Parent=Phyra80665;rank=3 scaffold_51 . repeat_region 136963 136991 . ? . description=trf scaffold_51 . repeat_region 138771 138862 . ? . description=trf scaffold_51 . biological_region 139759 139762 0.999 - . logic_name=eponine scaffold_51 . repeat_region 144315 144322 . ? . description=dust scaffold_51 . exon 138035 138035 . + . ID=Phyra80665.2;Parent=Phyra80665;constitutive=1;ensembl_phase=2;rank=2 scaffold_51 . exon 138239 140023 . + . ID=Phyra80665.3;Parent=Phyra80665;constitutive=1;rank=3 scaffold_51 ensembl protein_coding_gene 140447 142114 . + . ID=Phyra80666;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000049;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 140447 142114 . + . ID=Phyra80666;Parent=Phyra80666;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 140447 142114 . + 0 ID=Phyra80666;Parent=Phyra80666;rank=1 scaffold_51 . exon 140447 142114 . + . ID=Phyra80666.1;Parent=Phyra80666;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 142541 143062 . - . ID=Phyra80667;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000050;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 142541 143062 . - . ID=Phyra80667;Parent=Phyra80667;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 142541 143062 . - 0 ID=Phyra80667;Parent=Phyra80667;rank=1 scaffold_51 . exon 142541 143062 . - . ID=Phyra80667.1;Parent=Phyra80667;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 144443 148939 . - . ID=Phyra80668;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000051;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 144443 148939 . - . ID=Phyra80668;Parent=Phyra80668;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 144443 148939 . - 0 ID=Phyra80668;Parent=Phyra80668;rank=1 scaffold_51 . exon 144443 148939 . - . ID=Phyra80668.1;Parent=Phyra80668;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 150184 150429 . - . ID=Phyra50339;biotype=protein_coding;external_name=gwEuk.51.124.1;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 150184 150429 . - . ID=Phyra50339;Parent=Phyra50339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 150184 150429 . - 0 ID=Phyra50339;Parent=Phyra50339;rank=1 scaffold_51 . exon 150184 150429 . - . ID=Phyra50339.1;Parent=Phyra50339;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 154764 156398 . - . ID=Phyra80669;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000052;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 154764 156398 . - . ID=Phyra80669;Parent=Phyra80669;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 154764 156398 . - 0 ID=Phyra80669;Parent=Phyra80669;rank=1 scaffold_51 . exon 154764 156398 . - . ID=Phyra80669.1;Parent=Phyra80669;constitutive=1;rank=1 scaffold_51 . biological_region 156114 156115 0.999 - . logic_name=eponine scaffold_51 . biological_region 156289 156293 0.999 - . logic_name=eponine scaffold_51 . biological_region 158496 158500 0.999 - . logic_name=eponine scaffold_51 ensembl protein_coding_gene 156979 161028 . - . ID=Phyra95788;biotype=protein_coding;external_name=C_scaffold_51000016;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 156979 161028 . - . ID=Phyra95788;Parent=Phyra95788;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 156979 158675 . - 0 ID=Phyra95788;Parent=Phyra95788;rank=3 scaffold_51 . exon 156979 158675 . - . ID=Phyra95788.3;Parent=Phyra95788;constitutive=1;ensembl_phase=1;rank=3 scaffold_51 . CDS 158763 159043 . - 0 ID=Phyra95788;Parent=Phyra95788;rank=2 scaffold_51 . exon 158763 159043 . - . ID=Phyra95788.2;Parent=Phyra95788;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_51 . CDS 159065 161028 . - 0 ID=Phyra95788;Parent=Phyra95788;rank=1 scaffold_51 . exon 159065 161028 . - . ID=Phyra95788.1;Parent=Phyra95788;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 ensembl protein_coding_gene 162089 165219 . + . ID=Phyra95791;biotype=protein_coding;external_name=C_scaffold_51000019;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 162089 165219 . + . ID=Phyra95791;Parent=Phyra95791;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 162089 162259 . + 0 ID=Phyra95791;Parent=Phyra95791;rank=1 scaffold_51 . exon 162089 162259 . + . ID=Phyra95791.1;Parent=Phyra95791;constitutive=1;rank=1 scaffold_51 . CDS 162281 162429 . + 0 ID=Phyra95791;Parent=Phyra95791;rank=2 scaffold_51 . exon 162281 162429 . + . ID=Phyra95791.2;Parent=Phyra95791;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_51 . CDS 162501 162585 . + 0 ID=Phyra95791;Parent=Phyra95791;rank=3 scaffold_51 . exon 162501 162585 . + . ID=Phyra95791.3;Parent=Phyra95791;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 162646 163017 . + 0 ID=Phyra95791;Parent=Phyra95791;rank=4 scaffold_51 . exon 162646 163017 . + . ID=Phyra95791.4;Parent=Phyra95791;constitutive=1;rank=4 scaffold_51 . CDS 163150 163598 . + 0 ID=Phyra95791;Parent=Phyra95791;rank=5 scaffold_51 . exon 163150 163598 . + . ID=Phyra95791.5;Parent=Phyra95791;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_51 . CDS 163839 164023 . + 0 ID=Phyra95791;Parent=Phyra95791;rank=6 scaffold_51 . exon 163839 164023 . + . ID=Phyra95791.6;Parent=Phyra95791;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_51 . CDS 164186 164266 . + 0 ID=Phyra95791;Parent=Phyra95791;rank=7 scaffold_51 . exon 164186 164266 . + . ID=Phyra95791.7;Parent=Phyra95791;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_51 . CDS 164711 164886 . + 0 ID=Phyra95791;Parent=Phyra95791;rank=8 scaffold_51 . exon 164711 164886 . + . ID=Phyra95791.8;Parent=Phyra95791;constitutive=1;ensembl_phase=1;rank=8 scaffold_51 . CDS 164980 165219 . + 0 ID=Phyra95791;Parent=Phyra95791;rank=9 scaffold_51 . exon 164980 165219 . + . ID=Phyra95791.9;Parent=Phyra95791;constitutive=1;rank=9 scaffold_51 ensembl protein_coding_gene 165595 169560 . - . ID=Phyra95792;biotype=protein_coding;external_name=C_scaffold_51000020;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 165595 169560 . - . ID=Phyra95792;Parent=Phyra95792;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 165595 165911 . - 0 ID=Phyra95792;Parent=Phyra95792;rank=4 scaffold_51 . exon 165595 165911 . - . ID=Phyra95792.4;Parent=Phyra95792;constitutive=1;ensembl_phase=1;rank=4 scaffold_51 . CDS 165942 166621 . - 0 ID=Phyra95792;Parent=Phyra95792;rank=3 scaffold_51 . CDS 166667 167603 . - 0 ID=Phyra95792;Parent=Phyra95792;rank=2 scaffold_51 . CDS 167694 169560 . - 0 ID=Phyra95792;Parent=Phyra95792;rank=1 scaffold_51 . repeat_region 174354 174382 . ? . description=trf scaffold_51 ensembl protein_coding_gene 170263 174333 . - . ID=Phyra80675;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000058;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 170263 174333 . - . ID=Phyra80675;Parent=Phyra80675;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 170263 174333 . - 0 ID=Phyra80675;Parent=Phyra80675;rank=1 scaffold_51 . exon 170263 174333 . - . ID=Phyra80675.1;Parent=Phyra80675;constitutive=1;rank=1 scaffold_51 . exon 165942 166621 . - . ID=Phyra95792.3;Parent=Phyra95792;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_51 . exon 166667 167603 . - . ID=Phyra95792.2;Parent=Phyra95792;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_51 . exon 167694 169560 . - . ID=Phyra95792.1;Parent=Phyra95792;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 ensembl protein_coding_gene 175398 175859 . - . ID=Phyra95793;biotype=protein_coding;external_name=C_scaffold_51000021;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 175398 175859 . - . ID=Phyra95793;Parent=Phyra95793;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 175398 175424 . - 0 ID=Phyra95793;Parent=Phyra95793;rank=3 scaffold_51 . exon 175398 175424 . - . ID=Phyra95793.3;Parent=Phyra95793;constitutive=1;rank=3 scaffold_51 . CDS 175466 175663 . - 0 ID=Phyra95793;Parent=Phyra95793;rank=2 scaffold_51 . exon 175466 175663 . - . ID=Phyra95793.2;Parent=Phyra95793;constitutive=1;rank=2 scaffold_51 . CDS 175770 175859 . - 0 ID=Phyra95793;Parent=Phyra95793;rank=1 scaffold_51 . repeat_region 178285 178292 . ? . description=dust scaffold_51 . exon 175770 175859 . - . ID=Phyra95793.1;Parent=Phyra95793;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 176228 178323 . + . ID=Phyra95794;biotype=protein_coding;external_name=C_scaffold_51000022;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 176228 178323 . + . ID=Phyra95794;Parent=Phyra95794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 176228 176555 . + 0 ID=Phyra95794;Parent=Phyra95794;rank=1 scaffold_51 . exon 176228 176555 . + . ID=Phyra95794.1;Parent=Phyra95794;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 176583 177344 . + 0 ID=Phyra95794;Parent=Phyra95794;rank=2 scaffold_51 . exon 176583 177344 . + . ID=Phyra95794.2;Parent=Phyra95794;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 177414 177581 . + 0 ID=Phyra95794;Parent=Phyra95794;rank=3 scaffold_51 . exon 177414 177581 . + . ID=Phyra95794.3;Parent=Phyra95794;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_51 . CDS 177753 178176 . + 0 ID=Phyra95794;Parent=Phyra95794;rank=4 scaffold_51 . exon 177753 178176 . + . ID=Phyra95794.4;Parent=Phyra95794;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_51 . CDS 178320 178323 . + 0 ID=Phyra95794;Parent=Phyra95794;rank=5 scaffold_51 . exon 178320 178323 . + . ID=Phyra95794.5;Parent=Phyra95794;constitutive=1;ensembl_phase=2;rank=5 scaffold_51 . biological_region 191454 191455 0.999 + . logic_name=eponine scaffold_51 . repeat_region 193371 193390 . ? . description=trf scaffold_51 . repeat_region 193391 193411 . ? . description=trf scaffold_51 ensembl protein_coding_gene 188902 189880 . - . ID=Phyra80677;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000060;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 188902 189880 . - . ID=Phyra80677;Parent=Phyra80677;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 188902 188955 . - 0 ID=Phyra80677;Parent=Phyra80677;rank=4 scaffold_51 . exon 188902 188955 . - . ID=Phyra80677.4;Parent=Phyra80677;constitutive=1;rank=4 scaffold_51 . CDS 189023 189407 . - 0 ID=Phyra80677;Parent=Phyra80677;rank=3 scaffold_51 . exon 189023 189407 . - . ID=Phyra80677.3;Parent=Phyra80677;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 189481 189630 . - 0 ID=Phyra80677;Parent=Phyra80677;rank=2 scaffold_51 . exon 189481 189630 . - . ID=Phyra80677.2;Parent=Phyra80677;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_51 . CDS 189702 189880 . - 0 ID=Phyra80677;Parent=Phyra80677;rank=1 scaffold_51 . exon 189702 189880 . - . ID=Phyra80677.1;Parent=Phyra80677;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 ensembl protein_coding_gene 190637 192814 . - . ID=Phyra80678;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000061;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 190637 192814 . - . ID=Phyra80678;Parent=Phyra80678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 190637 192738 . - 0 ID=Phyra80678;Parent=Phyra80678;rank=2 scaffold_51 . exon 190637 192738 . - . ID=Phyra80678.2;Parent=Phyra80678;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 192790 192814 . - 0 ID=Phyra80678;Parent=Phyra80678;rank=1 scaffold_51 . exon 192790 192814 . - . ID=Phyra80678.1;Parent=Phyra80678;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 ensembl protein_coding_gene 193536 196610 . + . ID=Phyra80679;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000062;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 193536 196610 . + . ID=Phyra80679;Parent=Phyra80679;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 193536 196610 . + 0 ID=Phyra80679;Parent=Phyra80679;rank=1 scaffold_51 . exon 193536 196610 . + . ID=Phyra80679.1;Parent=Phyra80679;constitutive=1;rank=1 scaffold_51 . repeat_region 201232 201244 . ? . description=dust scaffold_51 . repeat_region 202478 202485 . ? . description=dust scaffold_51 ensembl protein_coding_gene 201626 202390 . + . ID=Phyra71825;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_51000008;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 201626 202390 . + . ID=Phyra71825;Parent=Phyra71825;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 201626 202390 . + 0 ID=Phyra71825;Parent=Phyra71825;rank=1 scaffold_51 . exon 201626 202390 . + . ID=Phyra71825.1;Parent=Phyra71825;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 196893 200418 . + . ID=Phyra80680;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000063;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 196893 200418 . + . ID=Phyra80680;Parent=Phyra80680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 196893 197596 . + 0 ID=Phyra80680;Parent=Phyra80680;rank=1 scaffold_51 . exon 196893 197596 . + . ID=Phyra80680.1;Parent=Phyra80680;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 . CDS 197654 198835 . + 0 ID=Phyra80680;Parent=Phyra80680;rank=2 scaffold_51 . exon 197654 198835 . + . ID=Phyra80680.2;Parent=Phyra80680;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_51 . CDS 199131 200418 . + 0 ID=Phyra80680;Parent=Phyra80680;rank=3 scaffold_51 . exon 199131 200418 . + . ID=Phyra80680.3;Parent=Phyra80680;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 ensembl protein_coding_gene 203628 205009 . + . ID=Phyra80682;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000065;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 203628 205009 . + . ID=Phyra80682;Parent=Phyra80682;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 203628 203648 . + 0 ID=Phyra80682;Parent=Phyra80682;rank=1 scaffold_51 . exon 203628 203648 . + . ID=Phyra80682.1;Parent=Phyra80682;constitutive=1;rank=1 scaffold_51 . CDS 203726 205009 . + 0 ID=Phyra80682;Parent=Phyra80682;rank=2 scaffold_51 . exon 203726 205009 . + . ID=Phyra80682.2;Parent=Phyra80682;constitutive=1;rank=2 scaffold_51 . repeat_region 205165 205184 . ? . description=trf scaffold_51 . biological_region 205308 205311 0.999 + . logic_name=eponine scaffold_51 . biological_region 207036 207039 0.999 + . logic_name=eponine scaffold_51 . biological_region 211204 211207 0.999 + . logic_name=eponine scaffold_51 . biological_region 211226 211226 0.999 + . logic_name=eponine scaffold_51 . biological_region 211308 211309 0.999 - . logic_name=eponine scaffold_51 . biological_region 211661 211663 0.999 + . logic_name=eponine scaffold_51 . biological_region 211713 211718 0.999 - . logic_name=eponine scaffold_51 . biological_region 212099 212100 0.999 + . logic_name=eponine scaffold_51 . biological_region 212269 212271 0.999 + . logic_name=eponine scaffold_51 . biological_region 213372 213376 0.999 + . logic_name=eponine scaffold_51 ensembl protein_coding_gene 205217 206676 . - . ID=Phyra50222;biotype=protein_coding;external_name=gwEuk.51.7.1;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 205217 206676 . - . ID=Phyra50222;Parent=Phyra50222;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 205217 206261 . - 0 ID=Phyra50222;Parent=Phyra50222;rank=3 scaffold_51 . exon 205217 206261 . - . ID=Phyra50222.3;Parent=Phyra50222;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 206348 206437 . - 0 ID=Phyra50222;Parent=Phyra50222;rank=2 scaffold_51 . exon 206348 206437 . - . ID=Phyra50222.2;Parent=Phyra50222;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_51 . CDS 206504 206676 . - 0 ID=Phyra50222;Parent=Phyra50222;rank=1 scaffold_51 . exon 206504 206676 . - . ID=Phyra50222.1;Parent=Phyra50222;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 ensembl protein_coding_gene 206947 208062 . + . ID=Phyra80684;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000067;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 206947 208062 . + . ID=Phyra80684;Parent=Phyra80684;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 206947 208062 . + 0 ID=Phyra80684;Parent=Phyra80684;rank=1 scaffold_51 . exon 206947 208062 . + . ID=Phyra80684.1;Parent=Phyra80684;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 208359 209768 . - . ID=Phyra80685;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000068;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 208359 209768 . - . ID=Phyra80685;Parent=Phyra80685;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 208359 209768 . - 0 ID=Phyra80685;Parent=Phyra80685;rank=1 scaffold_51 . exon 208359 209768 . - . ID=Phyra80685.1;Parent=Phyra80685;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 210939 212168 . - . ID=Phyra80686;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000069;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 210939 212168 . - . ID=Phyra80686;Parent=Phyra80686;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 210939 211902 . - 0 ID=Phyra80686;Parent=Phyra80686;rank=3 scaffold_51 . exon 210939 211902 . - . ID=Phyra80686.3;Parent=Phyra80686;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 211977 212085 . - 0 ID=Phyra80686;Parent=Phyra80686;rank=2 scaffold_51 . exon 211977 212085 . - . ID=Phyra80686.2;Parent=Phyra80686;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_51 . CDS 212129 212168 . - 0 ID=Phyra80686;Parent=Phyra80686;rank=1 scaffold_51 . exon 212129 212168 . - . ID=Phyra80686.1;Parent=Phyra80686;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . repeat_region 218231 218280 . ? . description=dust scaffold_51 ensembl protein_coding_gene 216334 217431 . - . ID=Phyra50225;biotype=protein_coding;external_name=gwEuk.51.10.1;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 216334 217431 . - . ID=Phyra50225;Parent=Phyra50225;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 216334 217431 . - 0 ID=Phyra50225;Parent=Phyra50225;rank=1 scaffold_51 . exon 216334 217431 . - . ID=Phyra50225.1;Parent=Phyra50225;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 214968 215540 . + . ID=Phyra80687;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000070;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 214968 215540 . + . ID=Phyra80687;Parent=Phyra80687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 214968 215540 . + 0 ID=Phyra80687;Parent=Phyra80687;rank=1 scaffold_51 . exon 214968 215540 . + . ID=Phyra80687.1;Parent=Phyra80687;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 220784 223819 . + . ID=Phyra80689;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000072;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 220784 223819 . + . ID=Phyra80689;Parent=Phyra80689;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 220784 220861 . + 0 ID=Phyra80689;Parent=Phyra80689;rank=1 scaffold_51 . exon 220784 220861 . + . ID=Phyra80689.1;Parent=Phyra80689;constitutive=1;rank=1 scaffold_51 . CDS 220932 221271 . + 0 ID=Phyra80689;Parent=Phyra80689;rank=2 scaffold_51 . exon 220932 221271 . + . ID=Phyra80689.2;Parent=Phyra80689;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_51 . CDS 221343 223819 . + 0 ID=Phyra80689;Parent=Phyra80689;rank=3 scaffold_51 . exon 221343 223819 . + . ID=Phyra80689.3;Parent=Phyra80689;constitutive=1;ensembl_phase=1;rank=3 scaffold_51 . repeat_region 224830 224853 . ? . description=trf scaffold_51 . repeat_region 224905 224964 . ? . description=trf scaffold_51 . repeat_region 225017 225062 . ? . description=trf scaffold_51 . repeat_region 225135 225165 . ? . description=trf scaffold_51 . biological_region 228991 228992 0.999 - . logic_name=eponine scaffold_51 . biological_region 229235 229238 0.999 + . logic_name=eponine scaffold_51 . biological_region 229286 229288 0.999 - . logic_name=eponine scaffold_51 . biological_region 232564 232565 0.999 - . logic_name=eponine scaffold_51 . biological_region 232808 232811 0.999 + . logic_name=eponine scaffold_51 . biological_region 232859 232861 0.999 - . logic_name=eponine scaffold_51 ensembl protein_coding_gene 224674 225294 . + . ID=Phyra80690;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000073;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 224674 225294 . + . ID=Phyra80690;Parent=Phyra80690;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 224674 225294 . + 0 ID=Phyra80690;Parent=Phyra80690;rank=1 scaffold_51 . exon 224674 225294 . + . ID=Phyra80690.1;Parent=Phyra80690;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 225420 225863 . - . ID=Phyra80691;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000074;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 225420 225863 . - . ID=Phyra80691;Parent=Phyra80691;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 225420 225863 . - 0 ID=Phyra80691;Parent=Phyra80691;rank=1 scaffold_51 . exon 225420 225863 . - . ID=Phyra80691.1;Parent=Phyra80691;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 227673 229334 . - . ID=Phyra80692;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000075;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 227673 229334 . - . ID=Phyra80692;Parent=Phyra80692;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 227673 229334 . - 0 ID=Phyra80692;Parent=Phyra80692;rank=1 scaffold_51 . exon 227673 229334 . - . ID=Phyra80692.1;Parent=Phyra80692;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 230102 232907 . - . ID=Phyra80693;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000076;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 230102 232907 . - . ID=Phyra80693;Parent=Phyra80693;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 230102 231125 . - 0 ID=Phyra80693;Parent=Phyra80693;rank=3 scaffold_51 . exon 230102 231125 . - . ID=Phyra80693.3;Parent=Phyra80693;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 231155 231194 . - 0 ID=Phyra80693;Parent=Phyra80693;rank=2 scaffold_51 . exon 231155 231194 . - . ID=Phyra80693.2;Parent=Phyra80693;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_51 . CDS 231263 232907 . - 0 ID=Phyra80693;Parent=Phyra80693;rank=1 scaffold_51 . exon 231263 232907 . - . ID=Phyra80693.1;Parent=Phyra80693;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 ensembl protein_coding_gene 233836 236214 . - . ID=Phyra80694;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000077;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 233836 236214 . - . ID=Phyra80694;Parent=Phyra80694;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 233836 236214 . - 0 ID=Phyra80694;Parent=Phyra80694;rank=1 scaffold_51 . exon 233836 236214 . - . ID=Phyra80694.1;Parent=Phyra80694;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 237116 239307 . - . ID=Phyra80695;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000078;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 237116 239307 . - . ID=Phyra80695;Parent=Phyra80695;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 237116 238007 . - 0 ID=Phyra80695;Parent=Phyra80695;rank=3 scaffold_51 . exon 237116 238007 . - . ID=Phyra80695.3;Parent=Phyra80695;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 238093 238188 . - 0 ID=Phyra80695;Parent=Phyra80695;rank=2 scaffold_51 . exon 238093 238188 . - . ID=Phyra80695.2;Parent=Phyra80695;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_51 . CDS 238265 239307 . - 0 ID=Phyra80695;Parent=Phyra80695;rank=1 scaffold_51 . exon 238265 239307 . - . ID=Phyra80695.1;Parent=Phyra80695;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 ensembl protein_coding_gene 239441 242025 . + . ID=Phyra80696;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000079;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 239441 242025 . + . ID=Phyra80696;Parent=Phyra80696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 239441 239548 . + 0 ID=Phyra80696;Parent=Phyra80696;rank=1 scaffold_51 . exon 239441 239548 . + . ID=Phyra80696.1;Parent=Phyra80696;constitutive=1;rank=1 scaffold_51 . CDS 239590 239824 . + 0 ID=Phyra80696;Parent=Phyra80696;rank=2 scaffold_51 . exon 239590 239824 . + . ID=Phyra80696.2;Parent=Phyra80696;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_51 . CDS 239899 239961 . + 0 ID=Phyra80696;Parent=Phyra80696;rank=3 scaffold_51 . exon 239899 239961 . + . ID=Phyra80696.3;Parent=Phyra80696;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_51 . CDS 240043 240174 . + 0 ID=Phyra80696;Parent=Phyra80696;rank=4 scaffold_51 . exon 240043 240174 . + . ID=Phyra80696.4;Parent=Phyra80696;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_51 . CDS 240378 240688 . + 0 ID=Phyra80696;Parent=Phyra80696;rank=5 scaffold_51 . exon 240378 240688 . + . ID=Phyra80696.5;Parent=Phyra80696;constitutive=1;ensembl_phase=1;rank=5 scaffold_51 . CDS 240757 240925 . + 0 ID=Phyra80696;Parent=Phyra80696;rank=6 scaffold_51 . exon 240757 240925 . + . ID=Phyra80696.6;Parent=Phyra80696;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_51 . CDS 241193 241420 . + 0 ID=Phyra80696;Parent=Phyra80696;rank=7 scaffold_51 . exon 241193 241420 . + . ID=Phyra80696.7;Parent=Phyra80696;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_51 . CDS 241487 241594 . + 0 ID=Phyra80696;Parent=Phyra80696;rank=8 scaffold_51 . exon 241487 241594 . + . ID=Phyra80696.8;Parent=Phyra80696;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_51 . CDS 241673 242025 . + 0 ID=Phyra80696;Parent=Phyra80696;rank=9 scaffold_51 . exon 241673 242025 . + . ID=Phyra80696.9;Parent=Phyra80696;constitutive=1;ensembl_phase=1;rank=9 scaffold_51 . biological_region 244424 244429 0.999 - . logic_name=eponine scaffold_51 . biological_region 244543 244546 0.999 - . logic_name=eponine scaffold_51 . biological_region 245744 245746 0.999 - . logic_name=eponine scaffold_51 . biological_region 252943 252949 0.999 - . logic_name=eponine scaffold_51 ensembl protein_coding_gene 244146 245877 . + . ID=Phyra50244;biotype=protein_coding;external_name=gwEuk.51.29.1;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 244146 245877 . + . ID=Phyra50244;Parent=Phyra50244;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 244146 244257 . + 0 ID=Phyra50244;Parent=Phyra50244;rank=1 scaffold_51 . exon 244146 244257 . + . ID=Phyra50244.1;Parent=Phyra50244;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 245528 245877 . + 0 ID=Phyra50244;Parent=Phyra50244;rank=2 scaffold_51 . exon 245528 245877 . + . ID=Phyra50244.2;Parent=Phyra50244;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 ensembl protein_coding_gene 249046 252969 . - . ID=Phyra80698;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000081;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 249046 252969 . - . ID=Phyra80698;Parent=Phyra80698;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 249046 252969 . - 0 ID=Phyra80698;Parent=Phyra80698;rank=1 scaffold_51 . exon 249046 252969 . - . ID=Phyra80698.1;Parent=Phyra80698;constitutive=1;rank=1 scaffold_51 . repeat_region 258703 258726 . ? . description=trf scaffold_51 . repeat_region 258778 258813 . ? . description=trf scaffold_51 . repeat_region 258866 258911 . ? . description=trf scaffold_51 ensembl protein_coding_gene 260977 262488 . + . ID=Phyra50254;biotype=protein_coding;external_name=gwEuk.51.39.1;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 260977 262488 . + . ID=Phyra50254;Parent=Phyra50254;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 260977 261751 . + 0 ID=Phyra50254;Parent=Phyra50254;rank=1 scaffold_51 . exon 260977 261751 . + . ID=Phyra50254.1;Parent=Phyra50254;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 262019 262488 . + 0 ID=Phyra50254;Parent=Phyra50254;rank=2 scaffold_51 . exon 262019 262488 . + . ID=Phyra50254.2;Parent=Phyra50254;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 ensembl protein_coding_gene 254063 257014 . - . ID=Phyra80699;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000082;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 254063 257014 . - . ID=Phyra80699;Parent=Phyra80699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 254063 257014 . - 0 ID=Phyra80699;Parent=Phyra80699;rank=1 scaffold_51 . exon 254063 257014 . - . ID=Phyra80699.1;Parent=Phyra80699;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 257335 259116 . + . ID=Phyra80700;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000083;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 257335 259116 . + . ID=Phyra80700;Parent=Phyra80700;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 257335 258053 . + 0 ID=Phyra80700;Parent=Phyra80700;rank=1 scaffold_51 . exon 257335 258053 . + . ID=Phyra80700.1;Parent=Phyra80700;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 . CDS 258251 258252 . + 0 ID=Phyra80700;Parent=Phyra80700;rank=2 scaffold_51 . exon 258251 258252 . + . ID=Phyra80700.2;Parent=Phyra80700;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_51 . CDS 258467 259116 . + 0 ID=Phyra80700;Parent=Phyra80700;rank=3 scaffold_51 . exon 258467 259116 . + . ID=Phyra80700.3;Parent=Phyra80700;constitutive=1;ensembl_phase=1;rank=3 scaffold_51 ensembl protein_coding_gene 266981 268063 . - . ID=Phyra80702;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000085;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 266981 268063 . - . ID=Phyra80702;Parent=Phyra80702;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 266981 267151 . - 0 ID=Phyra80702;Parent=Phyra80702;rank=5 scaffold_51 . exon 266981 267151 . - . ID=Phyra80702.5;Parent=Phyra80702;constitutive=1;rank=5 scaffold_51 . CDS 267229 267351 . - 0 ID=Phyra80702;Parent=Phyra80702;rank=4 scaffold_51 . exon 267229 267351 . - . ID=Phyra80702.4;Parent=Phyra80702;constitutive=1;rank=4 scaffold_51 . CDS 267421 267481 . - 0 ID=Phyra80702;Parent=Phyra80702;rank=3 scaffold_51 . exon 267421 267481 . - . ID=Phyra80702.3;Parent=Phyra80702;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 267558 267755 . - 0 ID=Phyra80702;Parent=Phyra80702;rank=2 scaffold_51 . exon 267558 267755 . - . ID=Phyra80702.2;Parent=Phyra80702;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_51 . CDS 267831 268063 . - 0 ID=Phyra80702;Parent=Phyra80702;rank=1 scaffold_51 . exon 267831 268063 . - . ID=Phyra80702.1;Parent=Phyra80702;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 ensembl protein_coding_gene 268585 270795 . + . ID=Phyra80703;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000086;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 268585 270795 . + . ID=Phyra80703;Parent=Phyra80703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 268585 270795 . + 0 ID=Phyra80703;Parent=Phyra80703;rank=1 scaffold_51 . exon 268585 270795 . + . ID=Phyra80703.1;Parent=Phyra80703;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 271047 273725 . - . ID=Phyra80704;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000087;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 271047 273725 . - . ID=Phyra80704;Parent=Phyra80704;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 271047 271305 . - 0 ID=Phyra80704;Parent=Phyra80704;rank=3 scaffold_51 . exon 271047 271305 . - . ID=Phyra80704.3;Parent=Phyra80704;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 271429 272799 . - 0 ID=Phyra80704;Parent=Phyra80704;rank=2 scaffold_51 . exon 271429 272799 . - . ID=Phyra80704.2;Parent=Phyra80704;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_51 . CDS 272878 273725 . - 0 ID=Phyra80704;Parent=Phyra80704;rank=1 scaffold_51 . exon 272878 273725 . - . ID=Phyra80704.1;Parent=Phyra80704;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 . repeat_region 276933 276954 . ? . description=dust scaffold_51 . repeat_region 276933 276959 . ? . description=trf scaffold_51 ensembl protein_coding_gene 274026 275651 . + . ID=Phyra80705;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000088;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 274026 275651 . + . ID=Phyra80705;Parent=Phyra80705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 274026 275651 . + 0 ID=Phyra80705;Parent=Phyra80705;rank=1 scaffold_51 . exon 274026 275651 . + . ID=Phyra80705.1;Parent=Phyra80705;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 275747 277285 . - . ID=Phyra80706;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000089;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 275747 277285 . - . ID=Phyra80706;Parent=Phyra80706;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 275747 277285 . - 0 ID=Phyra80706;Parent=Phyra80706;rank=1 scaffold_51 . exon 275747 277285 . - . ID=Phyra80706.1;Parent=Phyra80706;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 281471 284899 . - . ID=Phyra80707;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000090;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 281471 284899 . - . ID=Phyra80707;Parent=Phyra80707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 281471 281592 . - 0 ID=Phyra80707;Parent=Phyra80707;rank=2 scaffold_51 . exon 281471 281592 . - . ID=Phyra80707.2;Parent=Phyra80707;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 281713 284899 . - 0 ID=Phyra80707;Parent=Phyra80707;rank=1 scaffold_51 . exon 281713 284899 . - . ID=Phyra80707.1;Parent=Phyra80707;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 ensembl protein_coding_gene 289868 292930 . - . ID=Phyra80708;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000091;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 289868 292930 . - . ID=Phyra80708;Parent=Phyra80708;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 289868 292930 . - 0 ID=Phyra80708;Parent=Phyra80708;rank=1 scaffold_51 . exon 289868 292930 . - . ID=Phyra80708.1;Parent=Phyra80708;constitutive=1;rank=1 scaffold_51 . biological_region 294048 294051 0.999 + . logic_name=eponine scaffold_51 . repeat_region 301561 301568 . ? . description=dust scaffold_51 . repeat_region 301912 301940 . ? . description=trf scaffold_51 . repeat_region 301912 301942 . ? . description=trf scaffold_51 . repeat_region 301913 301942 . ? . description=trf scaffold_51 ensembl protein_coding_gene 293321 294568 . - . ID=Phyra80709;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000092;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 293321 294568 . - . ID=Phyra80709;Parent=Phyra80709;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 293321 293508 . - 0 ID=Phyra80709;Parent=Phyra80709;rank=4 scaffold_51 . exon 293321 293508 . - . ID=Phyra80709.4;Parent=Phyra80709;constitutive=1;ensembl_phase=1;rank=4 scaffold_51 . CDS 293582 293672 . - 0 ID=Phyra80709;Parent=Phyra80709;rank=3 scaffold_51 . exon 293582 293672 . - . ID=Phyra80709.3;Parent=Phyra80709;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_51 . CDS 293734 293829 . - 0 ID=Phyra80709;Parent=Phyra80709;rank=2 scaffold_51 . exon 293734 293829 . - . ID=Phyra80709.2;Parent=Phyra80709;constitutive=1;rank=2 scaffold_51 . CDS 293891 294568 . - 0 ID=Phyra80709;Parent=Phyra80709;rank=1 scaffold_51 . exon 293891 294568 . - . ID=Phyra80709.1;Parent=Phyra80709;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 301974 302882 . - . ID=Phyra80711;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000094;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 301974 302882 . - . ID=Phyra80711;Parent=Phyra80711;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 301974 302882 . - 0 ID=Phyra80711;Parent=Phyra80711;rank=1 scaffold_51 . exon 301974 302882 . - . ID=Phyra80711.1;Parent=Phyra80711;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 297228 301452 . - . ID=Phyra95800;biotype=protein_coding;external_name=C_scaffold_51000028;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 297228 301452 . - . ID=Phyra95800;Parent=Phyra95800;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 297228 297243 . - 0 ID=Phyra95800;Parent=Phyra95800;rank=12 scaffold_51 . exon 297228 297243 . - . ID=Phyra95800.12;Parent=Phyra95800;constitutive=1;ensembl_phase=2;rank=12 scaffold_51 . CDS 297460 297963 . - 0 ID=Phyra95800;Parent=Phyra95800;rank=11 scaffold_51 . exon 297460 297963 . - . ID=Phyra95800.11;Parent=Phyra95800;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_51 . CDS 298238 299379 . - 0 ID=Phyra95800;Parent=Phyra95800;rank=10 scaffold_51 . exon 298238 299379 . - . ID=Phyra95800.10;Parent=Phyra95800;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_51 . CDS 299518 299637 . - 0 ID=Phyra95800;Parent=Phyra95800;rank=9 scaffold_51 . exon 299518 299637 . - . ID=Phyra95800.9;Parent=Phyra95800;constitutive=1;rank=9 scaffold_51 . CDS 299722 299805 . - 0 ID=Phyra95800;Parent=Phyra95800;rank=8 scaffold_51 . exon 299722 299805 . - . ID=Phyra95800.8;Parent=Phyra95800;constitutive=1;rank=8 scaffold_51 . CDS 299833 299949 . - 0 ID=Phyra95800;Parent=Phyra95800;rank=7 scaffold_51 . exon 299833 299949 . - . ID=Phyra95800.7;Parent=Phyra95800;constitutive=1;rank=7 scaffold_51 . CDS 300014 300153 . - 0 ID=Phyra95800;Parent=Phyra95800;rank=6 scaffold_51 . exon 300014 300153 . - . ID=Phyra95800.6;Parent=Phyra95800;constitutive=1;ensembl_phase=1;rank=6 scaffold_51 . CDS 300184 300294 . - 0 ID=Phyra95800;Parent=Phyra95800;rank=5 scaffold_51 . exon 300184 300294 . - . ID=Phyra95800.5;Parent=Phyra95800;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_51 . CDS 300421 300706 . - 0 ID=Phyra95800;Parent=Phyra95800;rank=4 scaffold_51 . exon 300421 300706 . - . ID=Phyra95800.4;Parent=Phyra95800;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_51 . CDS 300787 300831 . - 0 ID=Phyra95800;Parent=Phyra95800;rank=3 scaffold_51 . exon 300787 300831 . - . ID=Phyra95800.3;Parent=Phyra95800;constitutive=1;rank=3 scaffold_51 . CDS 300904 300988 . - 0 ID=Phyra95800;Parent=Phyra95800;rank=2 scaffold_51 . exon 300904 300988 . - . ID=Phyra95800.2;Parent=Phyra95800;constitutive=1;ensembl_phase=2;rank=2 scaffold_51 . CDS 301364 301452 . - 0 ID=Phyra95800;Parent=Phyra95800;rank=1 scaffold_51 . exon 301364 301452 . - . ID=Phyra95800.1;Parent=Phyra95800;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 ensembl protein_coding_gene 304698 307085 . + . ID=Phyra80712;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000095;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 304698 307085 . + . ID=Phyra80712;Parent=Phyra80712;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 304698 307085 . + 0 ID=Phyra80712;Parent=Phyra80712;rank=1 scaffold_51 . exon 304698 307085 . + . ID=Phyra80712.1;Parent=Phyra80712;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 307177 315072 . - . ID=Phyra95802;biotype=protein_coding;external_name=C_scaffold_51000030;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 307177 315072 . - . ID=Phyra95802;Parent=Phyra95802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 307177 307512 . - 0 ID=Phyra95802;Parent=Phyra95802;rank=14 scaffold_51 . exon 307177 307512 . - . ID=Phyra95802.14;Parent=Phyra95802;constitutive=1;rank=14 scaffold_51 . CDS 307549 308564 . - 0 ID=Phyra95802;Parent=Phyra95802;rank=13 scaffold_51 . exon 307549 308564 . - . ID=Phyra95802.13;Parent=Phyra95802;constitutive=1;ensembl_phase=1;rank=13 scaffold_51 . CDS 308592 309240 . - 0 ID=Phyra95802;Parent=Phyra95802;rank=12 scaffold_51 . exon 308592 309240 . - . ID=Phyra95802.12;Parent=Phyra95802;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_51 . CDS 309274 309947 . - 0 ID=Phyra95802;Parent=Phyra95802;rank=11 scaffold_51 . exon 309274 309947 . - . ID=Phyra95802.11;Parent=Phyra95802;constitutive=1;ensembl_phase=1;rank=11 scaffold_51 . CDS 310053 310544 . - 0 ID=Phyra95802;Parent=Phyra95802;rank=10 scaffold_51 . exon 310053 310544 . - . ID=Phyra95802.10;Parent=Phyra95802;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_51 . CDS 310638 310767 . - 0 ID=Phyra95802;Parent=Phyra95802;rank=9 scaffold_51 . exon 310638 310767 . - . ID=Phyra95802.9;Parent=Phyra95802;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_51 . CDS 310807 310870 . - 0 ID=Phyra95802;Parent=Phyra95802;rank=8 scaffold_51 . exon 310807 310870 . - . ID=Phyra95802.8;Parent=Phyra95802;constitutive=1;ensembl_phase=2;rank=8 scaffold_51 . CDS 312368 312607 . - 0 ID=Phyra95802;Parent=Phyra95802;rank=7 scaffold_51 . CDS 312956 313046 . - 0 ID=Phyra95802;Parent=Phyra95802;rank=6 scaffold_51 . CDS 313131 313248 . - 0 ID=Phyra95802;Parent=Phyra95802;rank=5 scaffold_51 . CDS 313270 313406 . - 0 ID=Phyra95802;Parent=Phyra95802;rank=4 scaffold_51 . CDS 313467 313616 . - 0 ID=Phyra95802;Parent=Phyra95802;rank=3 scaffold_51 . CDS 313647 314540 . - 0 ID=Phyra95802;Parent=Phyra95802;rank=2 scaffold_51 . CDS 314796 315072 . - 0 ID=Phyra95802;Parent=Phyra95802;rank=1 scaffold_51 . repeat_region 315653 315685 . ? . description=dust scaffold_51 . repeat_region 315659 315684 . ? . description=trf scaffold_51 . repeat_region 317930 317937 . ? . description=dust scaffold_51 ensembl protein_coding_gene 316184 317677 . - . ID=Phyra80715;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000098;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 316184 317677 . - . ID=Phyra80715;Parent=Phyra80715;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 316184 317677 . - 0 ID=Phyra80715;Parent=Phyra80715;rank=1 scaffold_51 . exon 316184 317677 . - . ID=Phyra80715.1;Parent=Phyra80715;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 320226 321651 . + . ID=Phyra80716;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000099;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 320226 321651 . + . ID=Phyra80716;Parent=Phyra80716;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 320226 321282 . + 0 ID=Phyra80716;Parent=Phyra80716;rank=1 scaffold_51 . exon 320226 321282 . + . ID=Phyra80716.1;Parent=Phyra80716;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 321389 321651 . + 0 ID=Phyra80716;Parent=Phyra80716;rank=2 scaffold_51 . exon 321389 321651 . + . ID=Phyra80716.2;Parent=Phyra80716;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 ensembl protein_coding_gene 321841 323070 . - . ID=Phyra80717;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000100;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 321841 323070 . - . ID=Phyra80717;Parent=Phyra80717;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 321841 321962 . - 0 ID=Phyra80717;Parent=Phyra80717;rank=5 scaffold_51 . exon 321841 321962 . - . ID=Phyra80717.5;Parent=Phyra80717;constitutive=1;ensembl_phase=1;rank=5 scaffold_51 . CDS 322025 322096 . - 0 ID=Phyra80717;Parent=Phyra80717;rank=4 scaffold_51 . CDS 322175 322286 . - 0 ID=Phyra80717;Parent=Phyra80717;rank=3 scaffold_51 . CDS 322356 322516 . - 0 ID=Phyra80717;Parent=Phyra80717;rank=2 scaffold_51 . CDS 322593 323070 . - 0 ID=Phyra80717;Parent=Phyra80717;rank=1 scaffold_51 . exon 312368 312607 . - . ID=Phyra95802.7;Parent=Phyra95802;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_51 . exon 312956 313046 . - . ID=Phyra95802.6;Parent=Phyra95802;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_51 . exon 313131 313248 . - . ID=Phyra95802.5;Parent=Phyra95802;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_51 . exon 313270 313406 . - . ID=Phyra95802.4;Parent=Phyra95802;constitutive=1;ensembl_phase=1;rank=4 scaffold_51 . exon 313467 313616 . - . ID=Phyra95802.3;Parent=Phyra95802;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_51 . exon 313647 314540 . - . ID=Phyra95802.2;Parent=Phyra95802;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_51 . exon 314796 315072 . - . ID=Phyra95802.1;Parent=Phyra95802;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . biological_region 322841 322845 0.999 + . logic_name=eponine scaffold_51 . biological_region 322898 322900 0.999 - . logic_name=eponine scaffold_51 . biological_region 322919 322920 0.999 - . logic_name=eponine scaffold_51 . biological_region 322953 322956 0.999 + . logic_name=eponine scaffold_51 . biological_region 323133 323133 0.999 + . logic_name=eponine scaffold_51 . biological_region 325789 325790 0.999 + . logic_name=eponine scaffold_51 . exon 322025 322096 . - . ID=Phyra80717.4;Parent=Phyra80717;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_51 . exon 322175 322286 . - . ID=Phyra80717.3;Parent=Phyra80717;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_51 . exon 322356 322516 . - . ID=Phyra80717.2;Parent=Phyra80717;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 . exon 322593 323070 . - . ID=Phyra80717.1;Parent=Phyra80717;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 ensembl protein_coding_gene 325030 326564 . + . ID=Phyra80718;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000101;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 325030 326564 . + . ID=Phyra80718;Parent=Phyra80718;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 325030 326223 . + 0 ID=Phyra80718;Parent=Phyra80718;rank=1 scaffold_51 . exon 325030 326223 . + . ID=Phyra80718.1;Parent=Phyra80718;constitutive=1;rank=1 scaffold_51 . CDS 326327 326452 . + 0 ID=Phyra80718;Parent=Phyra80718;rank=2 scaffold_51 . exon 326327 326452 . + . ID=Phyra80718.2;Parent=Phyra80718;constitutive=1;rank=2 scaffold_51 . CDS 326556 326564 . + 0 ID=Phyra80718;Parent=Phyra80718;rank=3 scaffold_51 . exon 326556 326564 . + . ID=Phyra80718.3;Parent=Phyra80718;constitutive=1;rank=3 scaffold_51 . repeat_region 338730 338786 . ? . description=trf scaffold_51 . repeat_region 338739 338786 . ? . description=dust scaffold_51 ensembl protein_coding_gene 336471 337317 . - . ID=Phyra71827;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_51000010;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 336471 337317 . - . ID=Phyra71827;Parent=Phyra71827;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 336471 337183 . - 0 ID=Phyra71827;Parent=Phyra71827;rank=2 scaffold_51 . exon 336471 337183 . - . ID=Phyra71827.2;Parent=Phyra71827;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 337251 337317 . - 0 ID=Phyra71827;Parent=Phyra71827;rank=1 scaffold_51 . exon 337251 337317 . - . ID=Phyra71827.1;Parent=Phyra71827;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 ensembl protein_coding_gene 337723 338437 . - . ID=Phyra80720;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000103;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 337723 338437 . - . ID=Phyra80720;Parent=Phyra80720;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 337723 337990 . - 0 ID=Phyra80720;Parent=Phyra80720;rank=3 scaffold_51 . exon 337723 337990 . - . ID=Phyra80720.3;Parent=Phyra80720;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 338064 338223 . - 0 ID=Phyra80720;Parent=Phyra80720;rank=2 scaffold_51 . exon 338064 338223 . - . ID=Phyra80720.2;Parent=Phyra80720;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_51 . CDS 338428 338437 . - 0 ID=Phyra80720;Parent=Phyra80720;rank=1 scaffold_51 . exon 338428 338437 . - . ID=Phyra80720.1;Parent=Phyra80720;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 ensembl protein_coding_gene 338711 340948 . - . ID=Phyra80721;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000104;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 338711 340948 . - . ID=Phyra80721;Parent=Phyra80721;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 338711 340948 . - 0 ID=Phyra80721;Parent=Phyra80721;rank=1 scaffold_51 . exon 338711 340948 . - . ID=Phyra80721.1;Parent=Phyra80721;constitutive=1;rank=1 scaffold_51 . biological_region 342305 342309 0.999 - . logic_name=eponine scaffold_51 . biological_region 342423 342425 0.999 - . logic_name=eponine scaffold_51 . biological_region 344496 344496 0.999 - . logic_name=eponine scaffold_51 . biological_region 347593 347593 0.999 + . logic_name=eponine scaffold_51 ensembl protein_coding_gene 349628 352501 . - . ID=Phyra50293;biotype=protein_coding;external_name=gwEuk.51.78.1;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 349628 352501 . - . ID=Phyra50293;Parent=Phyra50293;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 349628 352501 . - 0 ID=Phyra50293;Parent=Phyra50293;rank=1 scaffold_51 . exon 349628 352501 . - . ID=Phyra50293.1;Parent=Phyra50293;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 342555 343475 . - . ID=Phyra80722;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000105;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 342555 343475 . - . ID=Phyra80722;Parent=Phyra80722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 342555 342632 . - 0 ID=Phyra80722;Parent=Phyra80722;rank=5 scaffold_51 . exon 342555 342632 . - . ID=Phyra80722.5;Parent=Phyra80722;constitutive=1;rank=5 scaffold_51 . CDS 342699 343019 . - 0 ID=Phyra80722;Parent=Phyra80722;rank=4 scaffold_51 . exon 342699 343019 . - . ID=Phyra80722.4;Parent=Phyra80722;constitutive=1;rank=4 scaffold_51 . CDS 343092 343170 . - 0 ID=Phyra80722;Parent=Phyra80722;rank=3 scaffold_51 . exon 343092 343170 . - . ID=Phyra80722.3;Parent=Phyra80722;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 343234 343367 . - 0 ID=Phyra80722;Parent=Phyra80722;rank=2 scaffold_51 . exon 343234 343367 . - . ID=Phyra80722.2;Parent=Phyra80722;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_51 . CDS 343440 343475 . - 0 ID=Phyra80722;Parent=Phyra80722;rank=1 scaffold_51 . exon 343440 343475 . - . ID=Phyra80722.1;Parent=Phyra80722;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 343912 347198 . + . ID=Phyra80723;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000106;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 343912 347198 . + . ID=Phyra80723;Parent=Phyra80723;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 343912 343932 . + 0 ID=Phyra80723;Parent=Phyra80723;rank=1 scaffold_51 . exon 343912 343932 . + . ID=Phyra80723.1;Parent=Phyra80723;constitutive=1;rank=1 scaffold_51 . CDS 344146 346920 . + 0 ID=Phyra80723;Parent=Phyra80723;rank=2 scaffold_51 . exon 344146 346920 . + . ID=Phyra80723.2;Parent=Phyra80723;constitutive=1;rank=2 scaffold_51 . CDS 346992 347198 . + 0 ID=Phyra80723;Parent=Phyra80723;rank=3 scaffold_51 . exon 346992 347198 . + . ID=Phyra80723.3;Parent=Phyra80723;constitutive=1;rank=3 scaffold_51 ensembl protein_coding_gene 348793 349416 . + . ID=Phyra80724;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000107;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 348793 349416 . + . ID=Phyra80724;Parent=Phyra80724;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 348793 349416 . + 0 ID=Phyra80724;Parent=Phyra80724;rank=1 scaffold_51 . exon 348793 349416 . + . ID=Phyra80724.1;Parent=Phyra80724;constitutive=1;rank=1 scaffold_51 . repeat_region 352861 352885 . ? . description=trf scaffold_51 . repeat_region 356472 356501 . ? . description=trf scaffold_51 . repeat_region 359780 359856 . ? . description=dust scaffold_51 ensembl protein_coding_gene 353743 356449 . - . ID=Phyra80726;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000109;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 353743 356449 . - . ID=Phyra80726;Parent=Phyra80726;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 353743 355779 . - 0 ID=Phyra80726;Parent=Phyra80726;rank=5 scaffold_51 . exon 353743 355779 . - . ID=Phyra80726.5;Parent=Phyra80726;constitutive=1;rank=5 scaffold_51 . CDS 355876 355951 . - 0 ID=Phyra80726;Parent=Phyra80726;rank=4 scaffold_51 . exon 355876 355951 . - . ID=Phyra80726.4;Parent=Phyra80726;constitutive=1;ensembl_phase=2;rank=4 scaffold_51 . CDS 356011 356126 . - 0 ID=Phyra80726;Parent=Phyra80726;rank=3 scaffold_51 . exon 356011 356126 . - . ID=Phyra80726.3;Parent=Phyra80726;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_51 . CDS 356152 356179 . - 0 ID=Phyra80726;Parent=Phyra80726;rank=2 scaffold_51 . exon 356152 356179 . - . ID=Phyra80726.2;Parent=Phyra80726;constitutive=1;ensembl_phase=2;rank=2 scaffold_51 . CDS 356325 356449 . - 0 ID=Phyra80726;Parent=Phyra80726;rank=1 scaffold_51 . exon 356325 356449 . - . ID=Phyra80726.1;Parent=Phyra80726;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 ensembl protein_coding_gene 357025 357636 . - . ID=Phyra80727;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000110;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 357025 357636 . - . ID=Phyra80727;Parent=Phyra80727;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 357025 357636 . - 0 ID=Phyra80727;Parent=Phyra80727;rank=1 scaffold_51 . exon 357025 357636 . - . ID=Phyra80727.1;Parent=Phyra80727;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 357953 358546 . - . ID=Phyra80728;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000111;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 357953 358546 . - . ID=Phyra80728;Parent=Phyra80728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 357953 358546 . - 0 ID=Phyra80728;Parent=Phyra80728;rank=1 scaffold_51 . exon 357953 358546 . - . ID=Phyra80728.1;Parent=Phyra80728;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 359483 360112 . + . ID=Phyra80729;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_51000112;logic_name=jgi_phyra1 scaffold_51 ensembl transcript 359483 360112 . + . ID=Phyra80729;Parent=Phyra80729;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_51 . CDS 359483 359770 . + 0 ID=Phyra80729;Parent=Phyra80729;rank=1 scaffold_51 . exon 359483 359770 . + . ID=Phyra80729.1;Parent=Phyra80729;constitutive=1;rank=1 scaffold_51 . CDS 359918 360112 . + 0 ID=Phyra80729;Parent=Phyra80729;rank=2 scaffold_51 . exon 359918 360112 . + . ID=Phyra80729.2;Parent=Phyra80729;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_50 1 374164 scaffold_50 . repeat_region 290 588 . ? . description=trf scaffold_50 . biological_region 702 707 0.999 + . logic_name=eponine scaffold_50 . biological_region 724 729 0.999 + . logic_name=eponine scaffold_50 . biological_region 756 759 0.999 + . logic_name=eponine scaffold_50 . repeat_region 1017 1026 . ? . description=dust scaffold_50 . repeat_region 4370 4499 . ? . description=trf scaffold_50 . repeat_region 4920 5049 . ? . description=trf scaffold_50 . repeat_region 5300 5336 . ? . description=trf scaffold_50 . biological_region 5426 5429 0.999 + . logic_name=eponine scaffold_50 . biological_region 5482 5484 0.999 + . logic_name=eponine scaffold_50 . biological_region 5509 5516 0.999 - . logic_name=eponine scaffold_50 . repeat_region 6797 6864 . ? . description=trf scaffold_50 . repeat_region 6848 6897 . ? . description=trf scaffold_50 . repeat_region 6902 6951 . ? . description=dust scaffold_50 . repeat_region 7250 7294 . ? . description=trf scaffold_50 . repeat_region 7278 7345 . ? . description=trf scaffold_50 . biological_region 8627 8634 0.999 + . logic_name=eponine scaffold_50 . biological_region 8659 8661 0.999 - . logic_name=eponine scaffold_50 . biological_region 8714 8717 0.999 - . logic_name=eponine scaffold_50 . repeat_region 8806 8842 . ? . description=trf scaffold_50 . repeat_region 9069 9308 . ? . description=trf scaffold_50 . repeat_region 9083 9150 . ? . description=trf scaffold_50 . repeat_region 9093 9161 . ? . description=trf scaffold_50 . repeat_region 9182 9253 . ? . description=trf scaffold_50 . repeat_region 9196 9353 . ? . description=trf scaffold_50 . repeat_region 9274 9332 . ? . description=trf scaffold_50 ensembl protein_coding_gene 38 583 . - . ID=Phyra80493;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000001;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 38 583 . - . ID=Phyra80493;Parent=Phyra80493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 38 118 . - 0 ID=Phyra80493;Parent=Phyra80493;rank=2 scaffold_50 . exon 38 118 . - . ID=Phyra80493.2;Parent=Phyra80493;constitutive=1;rank=2 scaffold_50 . CDS 332 583 . - 0 ID=Phyra80493;Parent=Phyra80493;rank=1 scaffold_50 . exon 332 583 . - . ID=Phyra80493.1;Parent=Phyra80493;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 977 3006 . + . ID=Phyra80494;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000002;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 977 3006 . + . ID=Phyra80494;Parent=Phyra80494;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 977 1011 . + 0 ID=Phyra80494;Parent=Phyra80494;rank=1 scaffold_50 . exon 977 1011 . + . ID=Phyra80494.1;Parent=Phyra80494;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 1359 1479 . + 0 ID=Phyra80494;Parent=Phyra80494;rank=2 scaffold_50 . exon 1359 1479 . + . ID=Phyra80494.2;Parent=Phyra80494;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 1599 1839 . + 0 ID=Phyra80494;Parent=Phyra80494;rank=3 scaffold_50 . exon 1599 1839 . + . ID=Phyra80494.3;Parent=Phyra80494;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_50 . CDS 1883 2010 . + 0 ID=Phyra80494;Parent=Phyra80494;rank=4 scaffold_50 . exon 1883 2010 . + . ID=Phyra80494.4;Parent=Phyra80494;constitutive=1;ensembl_phase=1;rank=4 scaffold_50 . CDS 2228 2338 . + 0 ID=Phyra80494;Parent=Phyra80494;rank=5 scaffold_50 . exon 2228 2338 . + . ID=Phyra80494.5;Parent=Phyra80494;constitutive=1;rank=5 scaffold_50 . CDS 2407 2471 . + 0 ID=Phyra80494;Parent=Phyra80494;rank=6 scaffold_50 . exon 2407 2471 . + . ID=Phyra80494.6;Parent=Phyra80494;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_50 . CDS 2649 3006 . + 0 ID=Phyra80494;Parent=Phyra80494;rank=7 scaffold_50 . exon 2649 3006 . + . ID=Phyra80494.7;Parent=Phyra80494;constitutive=1;ensembl_phase=2;rank=7 scaffold_50 ensembl protein_coding_gene 3417 5776 . - . ID=Phyra80495;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000003;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 3417 5776 . - . ID=Phyra80495;Parent=Phyra80495;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 3417 4444 . - 0 ID=Phyra80495;Parent=Phyra80495;rank=3 scaffold_50 . exon 3417 4444 . - . ID=Phyra80495.3;Parent=Phyra80495;constitutive=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 4479 4994 . - 0 ID=Phyra80495;Parent=Phyra80495;rank=2 scaffold_50 . exon 4479 4994 . - . ID=Phyra80495.2;Parent=Phyra80495;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 5029 5776 . - 0 ID=Phyra80495;Parent=Phyra80495;rank=1 scaffold_50 . exon 5029 5776 . - . ID=Phyra80495.1;Parent=Phyra80495;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 8366 10306 . + . ID=Phyra80496;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000004;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 8366 10306 . + . ID=Phyra80496;Parent=Phyra80496;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 8366 10306 . + 0 ID=Phyra80496;Parent=Phyra80496;rank=1 scaffold_50 . exon 8366 10306 . + . ID=Phyra80496.1;Parent=Phyra80496;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 10717 11632 . - . ID=Phyra80497;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000005;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 10717 11632 . - . ID=Phyra80497;Parent=Phyra80497;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 10717 11031 . - 0 ID=Phyra80497;Parent=Phyra80497;rank=5 scaffold_50 . exon 10717 11031 . - . ID=Phyra80497.5;Parent=Phyra80497;constitutive=1;rank=5 scaffold_50 . CDS 11096 11123 . - 0 ID=Phyra80497;Parent=Phyra80497;rank=4 scaffold_50 . exon 11096 11123 . - . ID=Phyra80497.4;Parent=Phyra80497;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 11252 11316 . - 0 ID=Phyra80497;Parent=Phyra80497;rank=3 scaffold_50 . exon 11252 11316 . - . ID=Phyra80497.3;Parent=Phyra80497;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_50 . CDS 11385 11563 . - 0 ID=Phyra80497;Parent=Phyra80497;rank=2 scaffold_50 . exon 11385 11563 . - . ID=Phyra80497.2;Parent=Phyra80497;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 11587 11632 . - 0 ID=Phyra80497;Parent=Phyra80497;rank=1 scaffold_50 . exon 11587 11632 . - . ID=Phyra80497.1;Parent=Phyra80497;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 11919 13114 . + . ID=Phyra80498;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000006;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 11919 13114 . + . ID=Phyra80498;Parent=Phyra80498;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 11919 12135 . + 0 ID=Phyra80498;Parent=Phyra80498;rank=1 scaffold_50 . exon 11919 12135 . + . ID=Phyra80498.1;Parent=Phyra80498;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 12162 13114 . + 0 ID=Phyra80498;Parent=Phyra80498;rank=2 scaffold_50 . exon 12162 13114 . + . ID=Phyra80498.2;Parent=Phyra80498;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 ensembl protein_coding_gene 15027 15560 . + . ID=Phyra80499;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000007;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 15027 15560 . + . ID=Phyra80499;Parent=Phyra80499;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 15027 15058 . + 0 ID=Phyra80499;Parent=Phyra80499;rank=1 scaffold_50 . exon 15027 15058 . + . ID=Phyra80499.1;Parent=Phyra80499;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 15087 15180 . + 0 ID=Phyra80499;Parent=Phyra80499;rank=2 scaffold_50 . exon 15087 15180 . + . ID=Phyra80499.2;Parent=Phyra80499;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 15300 15560 . + 0 ID=Phyra80499;Parent=Phyra80499;rank=3 scaffold_50 . exon 15300 15560 . + . ID=Phyra80499.3;Parent=Phyra80499;constitutive=1;rank=3 scaffold_50 ensembl protein_coding_gene 17374 18897 . + . ID=Phyra80500;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000008;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 17374 18897 . + . ID=Phyra80500;Parent=Phyra80500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 17374 18897 . + 0 ID=Phyra80500;Parent=Phyra80500;rank=1 scaffold_50 . exon 17374 18897 . + . ID=Phyra80500.1;Parent=Phyra80500;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 19550 21073 . + . ID=Phyra80501;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000009;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 19550 21073 . + . ID=Phyra80501;Parent=Phyra80501;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 19550 21073 . + 0 ID=Phyra80501;Parent=Phyra80501;rank=1 scaffold_50 . exon 19550 21073 . + . ID=Phyra80501.1;Parent=Phyra80501;constitutive=1;rank=1 scaffold_50 . biological_region 20895 20900 0.999 + . logic_name=eponine scaffold_50 . biological_region 24249 24252 0.999 + . logic_name=eponine scaffold_50 . biological_region 25900 25902 0.999 - . logic_name=eponine scaffold_50 . repeat_region 26341 26364 . ? . description=dust scaffold_50 . repeat_region 29196 29232 . ? . description=dust scaffold_50 ensembl protein_coding_gene 24091 24940 . + . ID=Phyra80502;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000010;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 24091 24940 . + . ID=Phyra80502;Parent=Phyra80502;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 24091 24118 . + 0 ID=Phyra80502;Parent=Phyra80502;rank=1 scaffold_50 . exon 24091 24118 . + . ID=Phyra80502.1;Parent=Phyra80502;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 24162 24798 . + 0 ID=Phyra80502;Parent=Phyra80502;rank=2 scaffold_50 . exon 24162 24798 . + . ID=Phyra80502.2;Parent=Phyra80502;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_50 . CDS 24859 24940 . + 0 ID=Phyra80502;Parent=Phyra80502;rank=3 scaffold_50 . exon 24859 24940 . + . ID=Phyra80502.3;Parent=Phyra80502;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 ensembl protein_coding_gene 24993 26313 . - . ID=Phyra80503;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000011;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 24993 26313 . - . ID=Phyra80503;Parent=Phyra80503;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 24993 26159 . - 0 ID=Phyra80503;Parent=Phyra80503;rank=2 scaffold_50 . exon 24993 26159 . - . ID=Phyra80503.2;Parent=Phyra80503;constitutive=1;rank=2 scaffold_50 . CDS 26263 26313 . - 0 ID=Phyra80503;Parent=Phyra80503;rank=1 scaffold_50 . exon 26263 26313 . - . ID=Phyra80503.1;Parent=Phyra80503;constitutive=1;rank=1 scaffold_50 . repeat_region 33148 33177 . ? . description=trf scaffold_50 ensembl protein_coding_gene 37439 38303 . - . ID=Phyra50157;biotype=protein_coding;external_name=gwEuk.50.105.1;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 37439 38303 . - . ID=Phyra50157;Parent=Phyra50157;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 37439 37612 . - 0 ID=Phyra50157;Parent=Phyra50157;rank=3 scaffold_50 . exon 37439 37612 . - . ID=Phyra50157.3;Parent=Phyra50157;constitutive=1;rank=3 scaffold_50 . CDS 37687 37913 . - 0 ID=Phyra50157;Parent=Phyra50157;rank=2 scaffold_50 . exon 37687 37913 . - . ID=Phyra50157.2;Parent=Phyra50157;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 37979 38303 . - 0 ID=Phyra50157;Parent=Phyra50157;rank=1 scaffold_50 . exon 37979 38303 . - . ID=Phyra50157.1;Parent=Phyra50157;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 29798 30901 . + . ID=Phyra80504;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000012;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 29798 30901 . + . ID=Phyra80504;Parent=Phyra80504;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 29798 30285 . + 0 ID=Phyra80504;Parent=Phyra80504;rank=1 scaffold_50 . exon 29798 30285 . + . ID=Phyra80504.1;Parent=Phyra80504;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 30368 30539 . + 0 ID=Phyra80504;Parent=Phyra80504;rank=2 scaffold_50 . exon 30368 30539 . + . ID=Phyra80504.2;Parent=Phyra80504;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 30611 30901 . + 0 ID=Phyra80504;Parent=Phyra80504;rank=3 scaffold_50 . exon 30611 30901 . + . ID=Phyra80504.3;Parent=Phyra80504;constitutive=1;rank=3 scaffold_50 ensembl protein_coding_gene 33178 34020 . + . ID=Phyra80505;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000013;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 33178 34020 . + . ID=Phyra80505;Parent=Phyra80505;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 33178 34020 . + 0 ID=Phyra80505;Parent=Phyra80505;rank=1 scaffold_50 . exon 33178 34020 . + . ID=Phyra80505.1;Parent=Phyra80505;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 34287 35111 . - . ID=Phyra80506;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000014;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 34287 35111 . - . ID=Phyra80506;Parent=Phyra80506;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 34287 35111 . - 0 ID=Phyra80506;Parent=Phyra80506;rank=1 scaffold_50 . exon 34287 35111 . - . ID=Phyra80506.1;Parent=Phyra80506;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 36508 37176 . + . ID=Phyra80507;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000015;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 36508 37176 . + . ID=Phyra80507;Parent=Phyra80507;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 36508 37176 . + 0 ID=Phyra80507;Parent=Phyra80507;rank=1 scaffold_50 . exon 36508 37176 . + . ID=Phyra80507.1;Parent=Phyra80507;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 38611 39933 . - . ID=Phyra80509;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000017;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 38611 39933 . - . ID=Phyra80509;Parent=Phyra80509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 38611 38911 . - 0 ID=Phyra80509;Parent=Phyra80509;rank=3 scaffold_50 . exon 38611 38911 . - . ID=Phyra80509.3;Parent=Phyra80509;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 . CDS 38984 39695 . - 0 ID=Phyra80509;Parent=Phyra80509;rank=2 scaffold_50 . exon 38984 39695 . - . ID=Phyra80509.2;Parent=Phyra80509;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_50 . CDS 39768 39933 . - 0 ID=Phyra80509;Parent=Phyra80509;rank=1 scaffold_50 . biological_region 39459 39460 0.999 - . logic_name=eponine scaffold_50 . biological_region 47421 47421 0.999 - . logic_name=eponine scaffold_50 ensembl protein_coding_gene 41588 42847 . - . ID=Phyra50162;biotype=protein_coding;external_name=gwEuk.50.110.1;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 41588 42847 . - . ID=Phyra50162;Parent=Phyra50162;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 41588 41759 . - 0 ID=Phyra50162;Parent=Phyra50162;rank=2 scaffold_50 . exon 41588 41759 . - . ID=Phyra50162.2;Parent=Phyra50162;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 41841 42847 . - 0 ID=Phyra50162;Parent=Phyra50162;rank=1 scaffold_50 . exon 41841 42847 . - . ID=Phyra50162.1;Parent=Phyra50162;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 44509 45543 . + . ID=Phyra71807;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_50000001;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 44509 45543 . + . ID=Phyra71807;Parent=Phyra71807;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 44509 45543 . + 0 ID=Phyra71807;Parent=Phyra71807;rank=1 scaffold_50 . exon 44509 45543 . + . ID=Phyra71807.1;Parent=Phyra71807;constitutive=1;rank=1 scaffold_50 . exon 39768 39933 . - . ID=Phyra80509.1;Parent=Phyra80509;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 43135 43647 . + . ID=Phyra80511;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000019;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 43135 43647 . + . ID=Phyra80511;Parent=Phyra80511;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 43135 43647 . + 0 ID=Phyra80511;Parent=Phyra80511;rank=1 scaffold_50 . exon 43135 43647 . + . ID=Phyra80511.1;Parent=Phyra80511;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 45901 47871 . + . ID=Phyra80513;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000021;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 45901 47871 . + . ID=Phyra80513;Parent=Phyra80513;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . exon 45901 46176 . + . ID=Phyra80513.1;Parent=Phyra80513;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_50 . CDS 45903 46176 . + 0 ID=Phyra80513;Parent=Phyra80513;rank=1 scaffold_50 . CDS 46237 47313 . + 0 ID=Phyra80513;Parent=Phyra80513;rank=2 scaffold_50 . exon 46237 47313 . + . ID=Phyra80513.2;Parent=Phyra80513;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 47551 47610 . + 0 ID=Phyra80513;Parent=Phyra80513;rank=3 scaffold_50 . exon 47551 47610 . + . ID=Phyra80513.3;Parent=Phyra80513;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 47686 47798 . + 0 ID=Phyra80513;Parent=Phyra80513;rank=4 scaffold_50 . exon 47686 47798 . + . ID=Phyra80513.4;Parent=Phyra80513;constitutive=1;ensembl_phase=1;rank=4 scaffold_50 . CDS 47842 47871 . + 0 ID=Phyra80513;Parent=Phyra80513;rank=5 scaffold_50 . exon 47842 47871 . + . ID=Phyra80513.5;Parent=Phyra80513;constitutive=1;rank=5 scaffold_50 . repeat_region 52432 52461 . ? . description=trf scaffold_50 . repeat_region 53945 54036 . ? . description=trf scaffold_50 . repeat_region 54065 54146 . ? . description=trf scaffold_50 . repeat_region 55396 55425 . ? . description=trf scaffold_50 . repeat_region 55905 55913 . ? . description=dust scaffold_50 . repeat_region 57466 57495 . ? . description=trf scaffold_50 ensembl protein_coding_gene 50011 50604 . + . ID=Phyra50170;biotype=protein_coding;external_name=gwEuk.50.118.1;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 50011 50604 . + . ID=Phyra50170;Parent=Phyra50170;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 50011 50604 . + 0 ID=Phyra50170;Parent=Phyra50170;rank=1 scaffold_50 . exon 50011 50604 . + . ID=Phyra50170.1;Parent=Phyra50170;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 51181 52536 . - . ID=Phyra80515;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000023;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 51181 52536 . - . ID=Phyra80515;Parent=Phyra80515;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 51181 52536 . - 0 ID=Phyra80515;Parent=Phyra80515;rank=1 scaffold_50 . exon 51181 52536 . - . ID=Phyra80515.1;Parent=Phyra80515;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 53734 55506 . - . ID=Phyra80516;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000024;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 53734 55506 . - . ID=Phyra80516;Parent=Phyra80516;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 53734 55506 . - 0 ID=Phyra80516;Parent=Phyra80516;rank=1 scaffold_50 . exon 53734 55506 . - . ID=Phyra80516.1;Parent=Phyra80516;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 57391 58746 . + . ID=Phyra80517;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000025;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 57391 58746 . + . ID=Phyra80517;Parent=Phyra80517;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 57391 58746 . + 0 ID=Phyra80517;Parent=Phyra80517;rank=1 scaffold_50 . exon 57391 58746 . + . ID=Phyra80517.1;Parent=Phyra80517;constitutive=1;rank=1 scaffold_50 . biological_region 63521 63523 0.999 - . logic_name=eponine scaffold_50 . biological_region 63575 63578 0.999 + . logic_name=eponine scaffold_50 . biological_region 64067 64074 0.999 - . logic_name=eponine scaffold_50 . biological_region 64093 64099 0.999 - . logic_name=eponine scaffold_50 . biological_region 64126 64127 0.999 + . logic_name=eponine scaffold_50 . biological_region 64149 64152 0.999 + . logic_name=eponine scaffold_50 . biological_region 64201 64208 0.999 - . logic_name=eponine scaffold_50 . biological_region 64660 64662 0.999 + . logic_name=eponine scaffold_50 . biological_region 64793 64795 0.999 + . logic_name=eponine scaffold_50 . biological_region 65650 65655 0.999 - . logic_name=eponine scaffold_50 . biological_region 67324 67324 0.999 - . logic_name=eponine scaffold_50 ensembl protein_coding_gene 59097 60224 . + . ID=Phyra80518;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000026;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 59097 60224 . + . ID=Phyra80518;Parent=Phyra80518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 59097 59338 . + 0 ID=Phyra80518;Parent=Phyra80518;rank=1 scaffold_50 . exon 59097 59338 . + . ID=Phyra80518.1;Parent=Phyra80518;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 59407 59621 . + 0 ID=Phyra80518;Parent=Phyra80518;rank=2 scaffold_50 . exon 59407 59621 . + . ID=Phyra80518.2;Parent=Phyra80518;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 59684 59862 . + 0 ID=Phyra80518;Parent=Phyra80518;rank=3 scaffold_50 . exon 59684 59862 . + . ID=Phyra80518.3;Parent=Phyra80518;constitutive=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 59924 60007 . + 0 ID=Phyra80518;Parent=Phyra80518;rank=4 scaffold_50 . exon 59924 60007 . + . ID=Phyra80518.4;Parent=Phyra80518;constitutive=1;rank=4 scaffold_50 . CDS 60072 60224 . + 0 ID=Phyra80518;Parent=Phyra80518;rank=5 scaffold_50 . exon 60072 60224 . + . ID=Phyra80518.5;Parent=Phyra80518;constitutive=1;rank=5 scaffold_50 ensembl protein_coding_gene 60841 62322 . + . ID=Phyra80519;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000027;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 60841 62322 . + . ID=Phyra80519;Parent=Phyra80519;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 60841 61096 . + 0 ID=Phyra80519;Parent=Phyra80519;rank=1 scaffold_50 . exon 60841 61096 . + . ID=Phyra80519.1;Parent=Phyra80519;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 61205 62322 . + 0 ID=Phyra80519;Parent=Phyra80519;rank=2 scaffold_50 . exon 61205 62322 . + . ID=Phyra80519.2;Parent=Phyra80519;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 ensembl protein_coding_gene 62879 64210 . + . ID=Phyra80520;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000028;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 62879 64210 . + . ID=Phyra80520;Parent=Phyra80520;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 62879 64210 . + 0 ID=Phyra80520;Parent=Phyra80520;rank=1 scaffold_50 . exon 62879 64210 . + . ID=Phyra80520.1;Parent=Phyra80520;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 64487 64975 . + . ID=Phyra80521;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000029;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 64487 64975 . + . ID=Phyra80521;Parent=Phyra80521;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 64487 64561 . + 0 ID=Phyra80521;Parent=Phyra80521;rank=1 scaffold_50 . exon 64487 64561 . + . ID=Phyra80521.1;Parent=Phyra80521;constitutive=1;rank=1 scaffold_50 . CDS 64634 64975 . + 0 ID=Phyra80521;Parent=Phyra80521;rank=2 scaffold_50 . exon 64634 64975 . + . ID=Phyra80521.2;Parent=Phyra80521;constitutive=1;rank=2 scaffold_50 ensembl protein_coding_gene 65169 67838 . + . ID=Phyra80522;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000030;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 65169 67838 . + . ID=Phyra80522;Parent=Phyra80522;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 65169 67838 . + 0 ID=Phyra80522;Parent=Phyra80522;rank=1 scaffold_50 . exon 65169 67838 . + . ID=Phyra80522.1;Parent=Phyra80522;constitutive=1;rank=1 scaffold_50 . repeat_region 71692 71701 . ? . description=dust scaffold_50 . repeat_region 73505 73512 . ? . description=dust scaffold_50 . repeat_region 75284 75322 . ? . description=trf scaffold_50 . repeat_region 75686 75693 . ? . description=dust scaffold_50 . repeat_region 76026 76075 . ? . description=trf scaffold_50 ensembl protein_coding_gene 68971 69681 . + . ID=Phyra80523;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000031;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 68971 69681 . + . ID=Phyra80523;Parent=Phyra80523;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 68971 69681 . + 0 ID=Phyra80523;Parent=Phyra80523;rank=1 scaffold_50 . exon 68971 69681 . + . ID=Phyra80523.1;Parent=Phyra80523;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 74689 75114 . + . ID=Phyra80524;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000032;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 74689 75114 . + . ID=Phyra80524;Parent=Phyra80524;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 74689 75114 . + 0 ID=Phyra80524;Parent=Phyra80524;rank=1 scaffold_50 . exon 74689 75114 . + . ID=Phyra80524.1;Parent=Phyra80524;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 76355 77591 . - . ID=Phyra80525;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000033;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 76355 77591 . - . ID=Phyra80525;Parent=Phyra80525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 76355 76376 . - 0 ID=Phyra80525;Parent=Phyra80525;rank=3 scaffold_50 . exon 76355 76376 . - . ID=Phyra80525.3;Parent=Phyra80525;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 . CDS 76423 77522 . - 0 ID=Phyra80525;Parent=Phyra80525;rank=2 scaffold_50 . exon 76423 77522 . - . ID=Phyra80525.2;Parent=Phyra80525;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_50 . CDS 77586 77591 . - 0 ID=Phyra80525;Parent=Phyra80525;rank=1 scaffold_50 . exon 77586 77591 . - . ID=Phyra80525.1;Parent=Phyra80525;constitutive=1;rank=1 scaffold_50 . biological_region 85194 85198 0.999 + . logic_name=eponine scaffold_50 ensembl protein_coding_gene 79808 80281 . + . ID=Phyra80526;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000034;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 79808 80281 . + . ID=Phyra80526;Parent=Phyra80526;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 79808 80281 . + 0 ID=Phyra80526;Parent=Phyra80526;rank=1 scaffold_50 . exon 79808 80281 . + . ID=Phyra80526.1;Parent=Phyra80526;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 83673 84839 . + . ID=Phyra80527;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000035;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 83673 84839 . + . ID=Phyra80527;Parent=Phyra80527;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 83673 83718 . + 0 ID=Phyra80527;Parent=Phyra80527;rank=1 scaffold_50 . exon 83673 83718 . + . ID=Phyra80527.1;Parent=Phyra80527;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 83802 84220 . + 0 ID=Phyra80527;Parent=Phyra80527;rank=2 scaffold_50 . exon 83802 84220 . + . ID=Phyra80527.2;Parent=Phyra80527;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 84275 84553 . + 0 ID=Phyra80527;Parent=Phyra80527;rank=3 scaffold_50 . exon 84275 84553 . + . ID=Phyra80527.3;Parent=Phyra80527;constitutive=1;rank=3 scaffold_50 . CDS 84634 84669 . + 0 ID=Phyra80527;Parent=Phyra80527;rank=4 scaffold_50 . exon 84634 84669 . + . ID=Phyra80527.4;Parent=Phyra80527;constitutive=1;rank=4 scaffold_50 . CDS 84789 84839 . + 0 ID=Phyra80527;Parent=Phyra80527;rank=5 scaffold_50 . exon 84789 84839 . + . ID=Phyra80527.5;Parent=Phyra80527;constitutive=1;rank=5 scaffold_50 ensembl protein_coding_gene 85167 87288 . - . ID=Phyra80528;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000036;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 85167 87288 . - . ID=Phyra80528;Parent=Phyra80528;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 85167 86325 . - 0 ID=Phyra80528;Parent=Phyra80528;rank=3 scaffold_50 . exon 85167 86325 . - . ID=Phyra80528.3;Parent=Phyra80528;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 . CDS 86585 87074 . - 0 ID=Phyra80528;Parent=Phyra80528;rank=2 scaffold_50 . exon 86585 87074 . - . ID=Phyra80528.2;Parent=Phyra80528;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_50 . CDS 87219 87288 . - 0 ID=Phyra80528;Parent=Phyra80528;rank=1 scaffold_50 . exon 87219 87288 . - . ID=Phyra80528.1;Parent=Phyra80528;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 88164 89151 . - . ID=Phyra80529;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000037;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 88164 89151 . - . ID=Phyra80529;Parent=Phyra80529;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 88164 88660 . - 0 ID=Phyra80529;Parent=Phyra80529;rank=3 scaffold_50 . exon 88164 88660 . - . ID=Phyra80529.3;Parent=Phyra80529;constitutive=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 88743 88881 . - 0 ID=Phyra80529;Parent=Phyra80529;rank=2 scaffold_50 . CDS 88948 89151 . - 0 ID=Phyra80529;Parent=Phyra80529;rank=1 scaffold_50 . repeat_region 91384 91484 . ? . description=trf scaffold_50 . repeat_region 91387 91490 . ? . description=trf scaffold_50 . repeat_region 91398 91490 . ? . description=trf scaffold_50 . exon 88743 88881 . - . ID=Phyra80529.2;Parent=Phyra80529;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_50 . exon 88948 89151 . - . ID=Phyra80529.1;Parent=Phyra80529;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 89489 89890 . + . ID=Phyra80530;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000038;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 89489 89890 . + . ID=Phyra80530;Parent=Phyra80530;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 89489 89890 . + 0 ID=Phyra80530;Parent=Phyra80530;rank=1 scaffold_50 . exon 89489 89890 . + . ID=Phyra80530.1;Parent=Phyra80530;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 90089 90526 . - . ID=Phyra80531;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000039;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 90089 90526 . - . ID=Phyra80531;Parent=Phyra80531;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 90089 90526 . - 0 ID=Phyra80531;Parent=Phyra80531;rank=1 scaffold_50 . exon 90089 90526 . - . ID=Phyra80531.1;Parent=Phyra80531;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 96677 97557 . - . ID=Phyra80532;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000040;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 96677 97557 . - . ID=Phyra80532;Parent=Phyra80532;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 96677 96680 . - 0 ID=Phyra80532;Parent=Phyra80532;rank=3 scaffold_50 . exon 96677 96680 . - . ID=Phyra80532.3;Parent=Phyra80532;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 . CDS 96827 96965 . - 0 ID=Phyra80532;Parent=Phyra80532;rank=2 scaffold_50 . exon 96827 96965 . - . ID=Phyra80532.2;Parent=Phyra80532;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_50 . CDS 97371 97557 . - 0 ID=Phyra80532;Parent=Phyra80532;rank=1 scaffold_50 . exon 97371 97557 . - . ID=Phyra80532.1;Parent=Phyra80532;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . biological_region 103874 103874 0.999 + . logic_name=eponine scaffold_50 . biological_region 103915 103915 0.999 - . logic_name=eponine scaffold_50 . biological_region 104966 104970 0.999 - . logic_name=eponine scaffold_50 ensembl protein_coding_gene 98700 99101 . + . ID=Phyra80533;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000041;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 98700 99101 . + . ID=Phyra80533;Parent=Phyra80533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 98700 99101 . + 0 ID=Phyra80533;Parent=Phyra80533;rank=1 scaffold_50 . exon 98700 99101 . + . ID=Phyra80533.1;Parent=Phyra80533;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 99770 100749 . - . ID=Phyra80534;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000042;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 99770 100749 . - . ID=Phyra80534;Parent=Phyra80534;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 99770 100266 . - 0 ID=Phyra80534;Parent=Phyra80534;rank=3 scaffold_50 . exon 99770 100266 . - . ID=Phyra80534.3;Parent=Phyra80534;constitutive=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 100343 100481 . - 0 ID=Phyra80534;Parent=Phyra80534;rank=2 scaffold_50 . exon 100343 100481 . - . ID=Phyra80534.2;Parent=Phyra80534;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_50 . CDS 100546 100749 . - 0 ID=Phyra80534;Parent=Phyra80534;rank=1 scaffold_50 . exon 100546 100749 . - . ID=Phyra80534.1;Parent=Phyra80534;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 101928 106845 . + . ID=Phyra80535;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000043;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 101928 106845 . + . ID=Phyra80535;Parent=Phyra80535;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 101928 106677 . + 0 ID=Phyra80535;Parent=Phyra80535;rank=1 scaffold_50 . exon 101928 106677 . + . ID=Phyra80535.1;Parent=Phyra80535;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 106775 106845 . + 0 ID=Phyra80535;Parent=Phyra80535;rank=2 scaffold_50 . exon 106775 106845 . + . ID=Phyra80535.2;Parent=Phyra80535;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . repeat_region 112628 112643 . ? . description=dust scaffold_50 . repeat_region 114454 114463 . ? . description=dust scaffold_50 . repeat_region 116748 116755 . ? . description=dust scaffold_50 ensembl protein_coding_gene 109635 110405 . - . ID=Phyra80536;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000044;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 109635 110405 . - . ID=Phyra80536;Parent=Phyra80536;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 109635 109690 . - 0 ID=Phyra80536;Parent=Phyra80536;rank=3 scaffold_50 . exon 109635 109690 . - . ID=Phyra80536.3;Parent=Phyra80536;constitutive=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 109825 109952 . - 0 ID=Phyra80536;Parent=Phyra80536;rank=2 scaffold_50 . exon 109825 109952 . - . ID=Phyra80536.2;Parent=Phyra80536;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 109999 110405 . - 0 ID=Phyra80536;Parent=Phyra80536;rank=1 scaffold_50 . exon 109999 110405 . - . ID=Phyra80536.1;Parent=Phyra80536;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . biological_region 118850 118851 0.999 - . logic_name=eponine scaffold_50 . biological_region 119126 119129 0.999 - . logic_name=eponine scaffold_50 . biological_region 119567 119572 0.999 - . logic_name=eponine scaffold_50 . biological_region 119727 119729 0.999 + . logic_name=eponine scaffold_50 . biological_region 120439 120445 0.999 + . logic_name=eponine scaffold_50 . biological_region 120935 120940 0.999 - . logic_name=eponine scaffold_50 ensembl protein_coding_gene 118888 121164 . + . ID=Phyra80537;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000045;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 118888 121164 . + . ID=Phyra80537;Parent=Phyra80537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 118888 121164 . + 0 ID=Phyra80537;Parent=Phyra80537;rank=1 scaffold_50 . exon 118888 121164 . + . ID=Phyra80537.1;Parent=Phyra80537;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 122623 126563 . + . ID=Phyra80538;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000046;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 122623 126563 . + . ID=Phyra80538;Parent=Phyra80538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 122623 125426 . + 0 ID=Phyra80538;Parent=Phyra80538;rank=1 scaffold_50 . exon 122623 125426 . + . ID=Phyra80538.1;Parent=Phyra80538;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 125626 125671 . + 0 ID=Phyra80538;Parent=Phyra80538;rank=2 scaffold_50 . exon 125626 125671 . + . ID=Phyra80538.2;Parent=Phyra80538;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 125911 126484 . + 0 ID=Phyra80538;Parent=Phyra80538;rank=3 scaffold_50 . exon 125911 126484 . + . ID=Phyra80538.3;Parent=Phyra80538;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_50 . CDS 126541 126563 . + 0 ID=Phyra80538;Parent=Phyra80538;rank=4 scaffold_50 . exon 126541 126563 . + . ID=Phyra80538.4;Parent=Phyra80538;constitutive=1;ensembl_phase=1;rank=4 scaffold_50 ensembl protein_coding_gene 127496 130850 . - . ID=Phyra80539;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000047;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 127496 130850 . - . ID=Phyra80539;Parent=Phyra80539;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 127496 127853 . - 0 ID=Phyra80539;Parent=Phyra80539;rank=4 scaffold_50 . exon 127496 127853 . - . ID=Phyra80539.4;Parent=Phyra80539;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 127896 129621 . - 0 ID=Phyra80539;Parent=Phyra80539;rank=3 scaffold_50 . exon 127896 129621 . - . ID=Phyra80539.3;Parent=Phyra80539;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_50 . CDS 129689 130688 . - 0 ID=Phyra80539;Parent=Phyra80539;rank=2 scaffold_50 . CDS 130779 130850 . - 0 ID=Phyra80539;Parent=Phyra80539;rank=1 scaffold_50 . repeat_region 133213 133285 . ? . description=trf scaffold_50 . exon 129689 130688 . - . ID=Phyra80539.2;Parent=Phyra80539;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_50 . exon 130779 130850 . - . ID=Phyra80539.1;Parent=Phyra80539;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 132588 132959 . + . ID=Phyra80540;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000048;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 132588 132959 . + . ID=Phyra80540;Parent=Phyra80540;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 132588 132959 . + 0 ID=Phyra80540;Parent=Phyra80540;rank=1 scaffold_50 . exon 132588 132959 . + . ID=Phyra80540.1;Parent=Phyra80540;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 137222 139150 . - . ID=Phyra80541;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000049;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 137222 139150 . - . ID=Phyra80541;Parent=Phyra80541;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 137222 139150 . - 0 ID=Phyra80541;Parent=Phyra80541;rank=1 scaffold_50 . exon 137222 139150 . - . ID=Phyra80541.1;Parent=Phyra80541;constitutive=1;rank=1 scaffold_50 . biological_region 139419 139420 0.999 + . logic_name=eponine scaffold_50 . biological_region 140830 140834 0.999 - . logic_name=eponine scaffold_50 . repeat_region 144632 144639 . ? . description=dust scaffold_50 . biological_region 145242 145243 0.999 - . logic_name=eponine scaffold_50 . biological_region 146194 146196 0.999 + . logic_name=eponine scaffold_50 . biological_region 146313 146314 0.999 - . logic_name=eponine scaffold_50 . repeat_region 147361 147369 . ? . description=dust scaffold_50 ensembl protein_coding_gene 140574 144290 . - . ID=Phyra80542;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000050;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 140574 144290 . - . ID=Phyra80542;Parent=Phyra80542;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 140574 141894 . - 0 ID=Phyra80542;Parent=Phyra80542;rank=8 scaffold_50 . exon 140574 141894 . - . ID=Phyra80542.8;Parent=Phyra80542;constitutive=1;ensembl_phase=2;rank=8 scaffold_50 . CDS 142112 142231 . - 0 ID=Phyra80542;Parent=Phyra80542;rank=7 scaffold_50 . exon 142112 142231 . - . ID=Phyra80542.7;Parent=Phyra80542;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_50 . CDS 142341 142772 . - 0 ID=Phyra80542;Parent=Phyra80542;rank=6 scaffold_50 . exon 142341 142772 . - . ID=Phyra80542.6;Parent=Phyra80542;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_50 . CDS 143074 143105 . - 0 ID=Phyra80542;Parent=Phyra80542;rank=5 scaffold_50 . exon 143074 143105 . - . ID=Phyra80542.5;Parent=Phyra80542;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_50 . CDS 143294 143461 . - 0 ID=Phyra80542;Parent=Phyra80542;rank=4 scaffold_50 . exon 143294 143461 . - . ID=Phyra80542.4;Parent=Phyra80542;constitutive=1;rank=4 scaffold_50 . CDS 143481 143766 . - 0 ID=Phyra80542;Parent=Phyra80542;rank=3 scaffold_50 . exon 143481 143766 . - . ID=Phyra80542.3;Parent=Phyra80542;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 . CDS 143796 143980 . - 0 ID=Phyra80542;Parent=Phyra80542;rank=2 scaffold_50 . exon 143796 143980 . - . ID=Phyra80542.2;Parent=Phyra80542;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_50 . CDS 144012 144290 . - 0 ID=Phyra80542;Parent=Phyra80542;rank=1 scaffold_50 . exon 144012 144290 . - . ID=Phyra80542.1;Parent=Phyra80542;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 145964 146770 . + . ID=Phyra80543;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000051;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 145964 146770 . + . ID=Phyra80543;Parent=Phyra80543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 145964 146046 . + 0 ID=Phyra80543;Parent=Phyra80543;rank=1 scaffold_50 . exon 145964 146046 . + . ID=Phyra80543.1;Parent=Phyra80543;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 146158 146239 . + 0 ID=Phyra80543;Parent=Phyra80543;rank=2 scaffold_50 . exon 146158 146239 . + . ID=Phyra80543.2;Parent=Phyra80543;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 146284 146365 . + 0 ID=Phyra80543;Parent=Phyra80543;rank=3 scaffold_50 . exon 146284 146365 . + . ID=Phyra80543.3;Parent=Phyra80543;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_50 . CDS 146444 146510 . + 0 ID=Phyra80543;Parent=Phyra80543;rank=4 scaffold_50 . exon 146444 146510 . + . ID=Phyra80543.4;Parent=Phyra80543;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_50 . CDS 146701 146770 . + 0 ID=Phyra80543;Parent=Phyra80543;rank=5 scaffold_50 . exon 146701 146770 . + . ID=Phyra80543.5;Parent=Phyra80543;constitutive=1;ensembl_phase=2;rank=5 scaffold_50 ensembl protein_coding_gene 147526 148449 . - . ID=Phyra80544;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000052;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 147526 148449 . - . ID=Phyra80544;Parent=Phyra80544;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 147526 148449 . - 0 ID=Phyra80544;Parent=Phyra80544;rank=1 scaffold_50 . exon 147526 148449 . - . ID=Phyra80544.1;Parent=Phyra80544;constitutive=1;rank=1 scaffold_50 . repeat_region 152982 153020 . ? . description=trf scaffold_50 . repeat_region 153153 153223 . + . description=(TCG)n scaffold_50 ensembl tRNA_gene 149064 149136 . - . ID=EPrPRAG00000000102;biotype=tRNA;description=tRNA-Arg for anticodon CCU [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_50 ensembl transcript 149064 149136 . - . ID=EPrPRAT00000000102;Parent=EPrPRAG00000000102;biotype=tRNA;logic_name=ncrna_eg scaffold_50 . exon 149064 149136 . - . ID=EPrPRAE00000000102;Parent=EPrPRAT00000000102;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 149321 150262 . - . ID=Phyra80545;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000053;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 149321 150262 . - . ID=Phyra80545;Parent=Phyra80545;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 149321 150262 . - 0 ID=Phyra80545;Parent=Phyra80545;rank=1 scaffold_50 . exon 149321 150262 . - . ID=Phyra80545.1;Parent=Phyra80545;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 150953 154540 . - . ID=Phyra80546;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000054;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 150953 154540 . - . ID=Phyra80546;Parent=Phyra80546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 150953 154540 . - 0 ID=Phyra80546;Parent=Phyra80546;rank=1 scaffold_50 . exon 150953 154540 . - . ID=Phyra80546.1;Parent=Phyra80546;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 154798 157062 . + . ID=Phyra80547;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000055;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 154798 157062 . + . ID=Phyra80547;Parent=Phyra80547;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 154798 155520 . + 0 ID=Phyra80547;Parent=Phyra80547;rank=1 scaffold_50 . exon 154798 155520 . + . ID=Phyra80547.1;Parent=Phyra80547;constitutive=1;rank=1 scaffold_50 . CDS 155680 156174 . + 0 ID=Phyra80547;Parent=Phyra80547;rank=2 scaffold_50 . exon 155680 156174 . + . ID=Phyra80547.2;Parent=Phyra80547;constitutive=1;rank=2 scaffold_50 . CDS 156283 157062 . + 0 ID=Phyra80547;Parent=Phyra80547;rank=3 scaffold_50 . exon 156283 157062 . + . ID=Phyra80547.3;Parent=Phyra80547;constitutive=1;rank=3 scaffold_50 ensembl protein_coding_gene 157371 159224 . + . ID=Phyra80548;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000056;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 157371 159224 . + . ID=Phyra80548;Parent=Phyra80548;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 157371 157833 . + 0 ID=Phyra80548;Parent=Phyra80548;rank=1 scaffold_50 . exon 157371 157833 . + . ID=Phyra80548.1;Parent=Phyra80548;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 157905 158218 . + 0 ID=Phyra80548;Parent=Phyra80548;rank=2 scaffold_50 . CDS 158304 159224 . + 0 ID=Phyra80548;Parent=Phyra80548;rank=3 scaffold_50 . biological_region 159558 159558 0.999 - . logic_name=eponine scaffold_50 . exon 157905 158218 . + . ID=Phyra80548.2;Parent=Phyra80548;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . exon 158304 159224 . + . ID=Phyra80548.3;Parent=Phyra80548;constitutive=1;rank=3 scaffold_50 ensembl protein_coding_gene 159551 160114 . + . ID=Phyra80549;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000057;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 159551 160114 . + . ID=Phyra80549;Parent=Phyra80549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 159551 160114 . + 0 ID=Phyra80549;Parent=Phyra80549;rank=1 scaffold_50 . exon 159551 160114 . + . ID=Phyra80549.1;Parent=Phyra80549;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 160295 160771 . - . ID=Phyra80550;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000058;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 160295 160771 . - . ID=Phyra80550;Parent=Phyra80550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 160295 160771 . - 0 ID=Phyra80550;Parent=Phyra80550;rank=1 scaffold_50 . exon 160295 160771 . - . ID=Phyra80550.1;Parent=Phyra80550;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 163075 167131 . + . ID=Phyra95743;biotype=protein_coding;external_name=C_scaffold_50000005;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 163075 167131 . + . ID=Phyra95743;Parent=Phyra95743;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 163075 163297 . + 0 ID=Phyra95743;Parent=Phyra95743;rank=1 scaffold_50 . exon 163075 163297 . + . ID=Phyra95743.1;Parent=Phyra95743;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 163385 163528 . + 0 ID=Phyra95743;Parent=Phyra95743;rank=2 scaffold_50 . exon 163385 163528 . + . ID=Phyra95743.2;Parent=Phyra95743;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 163568 166283 . + 0 ID=Phyra95743;Parent=Phyra95743;rank=3 scaffold_50 . exon 163568 166283 . + . ID=Phyra95743.3;Parent=Phyra95743;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_50 . CDS 166688 166905 . + 0 ID=Phyra95743;Parent=Phyra95743;rank=4 scaffold_50 . exon 166688 166905 . + . ID=Phyra95743.4;Parent=Phyra95743;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 166968 167131 . + 0 ID=Phyra95743;Parent=Phyra95743;rank=5 scaffold_50 . exon 166968 167131 . + . ID=Phyra95743.5;Parent=Phyra95743;constitutive=1;ensembl_phase=1;rank=5 scaffold_50 ensembl protein_coding_gene 167241 169429 . - . ID=Phyra95745;biotype=protein_coding;external_name=C_scaffold_50000007;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 167241 169429 . - . ID=Phyra95745;Parent=Phyra95745;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 167241 167572 . - 0 ID=Phyra95745;Parent=Phyra95745;rank=6 scaffold_50 . exon 167241 167572 . - . ID=Phyra95745.6;Parent=Phyra95745;constitutive=1;ensembl_phase=1;rank=6 scaffold_50 . CDS 167624 167911 . - 0 ID=Phyra95745;Parent=Phyra95745;rank=5 scaffold_50 . CDS 168116 168317 . - 0 ID=Phyra95745;Parent=Phyra95745;rank=4 scaffold_50 . CDS 168381 168698 . - 0 ID=Phyra95745;Parent=Phyra95745;rank=3 scaffold_50 . CDS 169321 169385 . - 0 ID=Phyra95745;Parent=Phyra95745;rank=2 scaffold_50 . CDS 169414 169429 . - 0 ID=Phyra95745;Parent=Phyra95745;rank=1 scaffold_50 ensembl protein_coding_gene 169801 172464 . + . ID=Phyra80555;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000063;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 169801 172464 . + . ID=Phyra80555;Parent=Phyra80555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 169801 170031 . + 0 ID=Phyra80555;Parent=Phyra80555;rank=1 scaffold_50 . exon 169801 170031 . + . ID=Phyra80555.1;Parent=Phyra80555;constitutive=1;rank=1 scaffold_50 . CDS 170117 170257 . + 0 ID=Phyra80555;Parent=Phyra80555;rank=2 scaffold_50 . exon 170117 170257 . + . ID=Phyra80555.2;Parent=Phyra80555;constitutive=1;rank=2 scaffold_50 . CDS 170326 172464 . + 0 ID=Phyra80555;Parent=Phyra80555;rank=3 scaffold_50 . exon 170326 172464 . + . ID=Phyra80555.3;Parent=Phyra80555;constitutive=1;rank=3 scaffold_50 ensembl protein_coding_gene 173349 176393 . - . ID=Phyra80556;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000064;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 173349 176393 . - . ID=Phyra80556;Parent=Phyra80556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 173349 175816 . - 0 ID=Phyra80556;Parent=Phyra80556;rank=2 scaffold_50 . exon 173349 175816 . - . ID=Phyra80556.2;Parent=Phyra80556;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 175892 176393 . - 0 ID=Phyra80556;Parent=Phyra80556;rank=1 scaffold_50 . exon 175892 176393 . - . ID=Phyra80556.1;Parent=Phyra80556;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . exon 167624 167911 . - . ID=Phyra95745.5;Parent=Phyra95745;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_50 . exon 168116 168317 . - . ID=Phyra95745.4;Parent=Phyra95745;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_50 . exon 168381 168698 . - . ID=Phyra95745.3;Parent=Phyra95745;constitutive=1;rank=3 scaffold_50 . exon 169321 169385 . - . ID=Phyra95745.2;Parent=Phyra95745;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . exon 169414 169429 . - . ID=Phyra95745.1;Parent=Phyra95745;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . repeat_region 177911 177969 . ? . description=trf scaffold_50 . biological_region 177927 177929 0.999 + . logic_name=eponine scaffold_50 . biological_region 178206 178207 0.999 + . logic_name=eponine scaffold_50 . repeat_region 179920 179974 . ? . description=trf scaffold_50 ensembl protein_coding_gene 177473 178006 . - . ID=Phyra80557;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000065;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 177473 178006 . - . ID=Phyra80557;Parent=Phyra80557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 177473 178006 . - 0 ID=Phyra80557;Parent=Phyra80557;rank=1 scaffold_50 . exon 177473 178006 . - . ID=Phyra80557.1;Parent=Phyra80557;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 183806 185848 . - . ID=Phyra80558;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000066;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 183806 185848 . - . ID=Phyra80558;Parent=Phyra80558;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 183806 184498 . - 0 ID=Phyra80558;Parent=Phyra80558;rank=2 scaffold_50 . exon 183806 184498 . - . ID=Phyra80558.2;Parent=Phyra80558;constitutive=1;rank=2 scaffold_50 . CDS 184535 185848 . - 0 ID=Phyra80558;Parent=Phyra80558;rank=1 scaffold_50 . exon 184535 185848 . - . ID=Phyra80558.1;Parent=Phyra80558;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 185991 188552 . - . ID=Phyra80559;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000067;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 185991 188552 . - . ID=Phyra80559;Parent=Phyra80559;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 185991 187054 . - 0 ID=Phyra80559;Parent=Phyra80559;rank=2 scaffold_50 . exon 185991 187054 . - . ID=Phyra80559.2;Parent=Phyra80559;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 187460 188552 . - 0 ID=Phyra80559;Parent=Phyra80559;rank=1 scaffold_50 . repeat_region 189076 189084 . ? . description=dust scaffold_50 . repeat_region 190545 190594 . ? . description=dust scaffold_50 . repeat_region 194169 194177 . ? . description=dust scaffold_50 . repeat_region 196067 196076 . ? . description=dust scaffold_50 . exon 187460 188552 . - . ID=Phyra80559.1;Parent=Phyra80559;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 191084 193645 . - . ID=Phyra80560;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000068;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 191084 193645 . - . ID=Phyra80560;Parent=Phyra80560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 191084 192147 . - 0 ID=Phyra80560;Parent=Phyra80560;rank=2 scaffold_50 . exon 191084 192147 . - . ID=Phyra80560.2;Parent=Phyra80560;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 192553 193645 . - 0 ID=Phyra80560;Parent=Phyra80560;rank=1 scaffold_50 . exon 192553 193645 . - . ID=Phyra80560.1;Parent=Phyra80560;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 196738 197313 . - . ID=Phyra80561;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000069;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 196738 197313 . - . ID=Phyra80561;Parent=Phyra80561;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 196738 197313 . - 0 ID=Phyra80561;Parent=Phyra80561;rank=1 scaffold_50 . exon 196738 197313 . - . ID=Phyra80561.1;Parent=Phyra80561;constitutive=1;rank=1 scaffold_50 . biological_region 198741 198744 0.999 + . logic_name=eponine scaffold_50 . biological_region 199032 199033 0.999 + . logic_name=eponine scaffold_50 . biological_region 200462 200465 0.999 - . logic_name=eponine scaffold_50 . biological_region 200588 200593 0.999 - . logic_name=eponine scaffold_50 . biological_region 200645 200649 0.999 + . logic_name=eponine scaffold_50 . biological_region 200965 200972 0.999 + . logic_name=eponine scaffold_50 . biological_region 200993 200996 0.999 + . logic_name=eponine scaffold_50 . biological_region 201418 201424 0.999 + . logic_name=eponine scaffold_50 . biological_region 201445 201450 0.999 + . logic_name=eponine scaffold_50 . biological_region 201579 201585 0.999 - . logic_name=eponine scaffold_50 . repeat_region 202202 202300 . ? . description=trf scaffold_50 . repeat_region 202217 202259 . ? . description=trf scaffold_50 . repeat_region 202358 202396 . ? . description=trf scaffold_50 . repeat_region 202358 202396 . ? . description=trf scaffold_50 . biological_region 203730 203735 0.999 - . logic_name=eponine scaffold_50 . biological_region 203745 203751 0.999 + . logic_name=eponine scaffold_50 . repeat_region 203779 203827 . ? . description=trf scaffold_50 . biological_region 203782 203791 0.999 + . logic_name=eponine scaffold_50 . biological_region 203831 203835 0.999 - . logic_name=eponine scaffold_50 . biological_region 203834 203838 0.999 + . logic_name=eponine scaffold_50 . biological_region 203870 203871 0.999 + . logic_name=eponine scaffold_50 . biological_region 203884 203891 0.999 - . logic_name=eponine scaffold_50 . biological_region 203906 203912 0.999 + . logic_name=eponine scaffold_50 . biological_region 203920 203921 0.999 - . logic_name=eponine scaffold_50 . biological_region 203940 203947 0.999 + . logic_name=eponine scaffold_50 . biological_region 203952 203958 0.999 - . logic_name=eponine scaffold_50 . repeat_region 203965 204005 . ? . description=trf scaffold_50 . biological_region 203967 203968 0.999 + . logic_name=eponine scaffold_50 . biological_region 203971 203977 0.999 + . logic_name=eponine scaffold_50 . biological_region 203976 203981 0.999 - . logic_name=eponine scaffold_50 . repeat_region 203988 204038 . ? . description=trf scaffold_50 . biological_region 204028 204029 0.999 - . logic_name=eponine scaffold_50 . repeat_region 204708 204748 . ? . description=trf scaffold_50 . biological_region 206548 206553 0.999 + . logic_name=eponine scaffold_50 . biological_region 206737 206739 0.999 + . logic_name=eponine scaffold_50 ensembl protein_coding_gene 198560 199750 . - . ID=Phyra50060;biotype=protein_coding;external_name=gwEuk.50.8.1;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 198560 199750 . - . ID=Phyra50060;Parent=Phyra50060;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 198560 199311 . - 0 ID=Phyra50060;Parent=Phyra50060;rank=3 scaffold_50 . exon 198560 199311 . - . ID=Phyra50060.3;Parent=Phyra50060;constitutive=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 199385 199494 . - 0 ID=Phyra50060;Parent=Phyra50060;rank=2 scaffold_50 . exon 199385 199494 . - . ID=Phyra50060.2;Parent=Phyra50060;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 199584 199750 . - 0 ID=Phyra50060;Parent=Phyra50060;rank=1 scaffold_50 . exon 199584 199750 . - . ID=Phyra50060.1;Parent=Phyra50060;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 202328 203701 . - . ID=Phyra50065;biotype=protein_coding;external_name=gwEuk.50.13.1;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 202328 203701 . - . ID=Phyra50065;Parent=Phyra50065;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 202328 203701 . - 0 ID=Phyra50065;Parent=Phyra50065;rank=1 scaffold_50 . exon 202328 203701 . - . ID=Phyra50065.1;Parent=Phyra50065;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 206292 207293 . - . ID=Phyra50069;biotype=protein_coding;external_name=gwEuk.50.17.1;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 206292 207293 . - . ID=Phyra50069;Parent=Phyra50069;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 206292 207293 . - 0 ID=Phyra50069;Parent=Phyra50069;rank=1 scaffold_50 . exon 206292 207293 . - . ID=Phyra50069.1;Parent=Phyra50069;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 200402 201591 . - . ID=Phyra80563;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000071;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 200402 201591 . - . ID=Phyra80563;Parent=Phyra80563;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 200402 201159 . - 0 ID=Phyra80563;Parent=Phyra80563;rank=3 scaffold_50 . exon 200402 201159 . - . ID=Phyra80563.3;Parent=Phyra80563;constitutive=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 201236 201345 . - 0 ID=Phyra80563;Parent=Phyra80563;rank=2 scaffold_50 . exon 201236 201345 . - . ID=Phyra80563.2;Parent=Phyra80563;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 201410 201591 . - 0 ID=Phyra80563;Parent=Phyra80563;rank=1 scaffold_50 . exon 201410 201591 . - . ID=Phyra80563.1;Parent=Phyra80563;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 204775 206059 . + . ID=Phyra80565;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000073;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 204775 206059 . + . ID=Phyra80565;Parent=Phyra80565;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 204775 205287 . + 0 ID=Phyra80565;Parent=Phyra80565;rank=1 scaffold_50 . exon 204775 205287 . + . ID=Phyra80565.1;Parent=Phyra80565;constitutive=1;rank=1 scaffold_50 . CDS 205356 205593 . + 0 ID=Phyra80565;Parent=Phyra80565;rank=2 scaffold_50 . exon 205356 205593 . + . ID=Phyra80565.2;Parent=Phyra80565;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_50 . CDS 205655 205727 . + 0 ID=Phyra80565;Parent=Phyra80565;rank=3 scaffold_50 . exon 205655 205727 . + . ID=Phyra80565.3;Parent=Phyra80565;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_50 . CDS 205792 206059 . + 0 ID=Phyra80565;Parent=Phyra80565;rank=4 scaffold_50 . exon 205792 206059 . + . ID=Phyra80565.4;Parent=Phyra80565;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 ensembl protein_coding_gene 207613 208665 . + . ID=Phyra71811;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_50000005;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 207613 208665 . + . ID=Phyra71811;Parent=Phyra71811;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 207613 207762 . + 0 ID=Phyra71811;Parent=Phyra71811;rank=1 scaffold_50 . exon 207613 207762 . + . ID=Phyra71811.1;Parent=Phyra71811;constitutive=1;rank=1 scaffold_50 . CDS 207839 207970 . + 0 ID=Phyra71811;Parent=Phyra71811;rank=2 scaffold_50 . exon 207839 207970 . + . ID=Phyra71811.2;Parent=Phyra71811;constitutive=1;rank=2 scaffold_50 . CDS 208042 208429 . + 0 ID=Phyra71811;Parent=Phyra71811;rank=3 scaffold_50 . exon 208042 208429 . + . ID=Phyra71811.3;Parent=Phyra71811;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_50 . CDS 208505 208665 . + 0 ID=Phyra71811;Parent=Phyra71811;rank=4 scaffold_50 . exon 208505 208665 . + . ID=Phyra71811.4;Parent=Phyra71811;constitutive=1;ensembl_phase=1;rank=4 scaffold_50 ensembl protein_coding_gene 211076 212533 . - . ID=Phyra80568;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000076;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 211076 212533 . - . ID=Phyra80568;Parent=Phyra80568;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 211076 212047 . - 0 ID=Phyra80568;Parent=Phyra80568;rank=4 scaffold_50 . exon 211076 212047 . - . ID=Phyra80568.4;Parent=Phyra80568;constitutive=1;rank=4 scaffold_50 . CDS 212112 212269 . - 0 ID=Phyra80568;Parent=Phyra80568;rank=3 scaffold_50 . exon 212112 212269 . - . ID=Phyra80568.3;Parent=Phyra80568;constitutive=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 212341 212374 . - 0 ID=Phyra80568;Parent=Phyra80568;rank=2 scaffold_50 . exon 212341 212374 . - . ID=Phyra80568.2;Parent=Phyra80568;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_50 . CDS 212444 212533 . - 0 ID=Phyra80568;Parent=Phyra80568;rank=1 scaffold_50 . exon 212444 212533 . - . ID=Phyra80568.1;Parent=Phyra80568;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 212733 216589 . + . ID=Phyra80569;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000077;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 212733 216589 . + . ID=Phyra80569;Parent=Phyra80569;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 212733 213826 . + 0 ID=Phyra80569;Parent=Phyra80569;rank=1 scaffold_50 . exon 212733 213826 . + . ID=Phyra80569.1;Parent=Phyra80569;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 213913 214078 . + 0 ID=Phyra80569;Parent=Phyra80569;rank=2 scaffold_50 . exon 213913 214078 . + . ID=Phyra80569.2;Parent=Phyra80569;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 214382 214495 . + 0 ID=Phyra80569;Parent=Phyra80569;rank=3 scaffold_50 . exon 214382 214495 . + . ID=Phyra80569.3;Parent=Phyra80569;constitutive=1;rank=3 scaffold_50 . CDS 214571 214723 . + 0 ID=Phyra80569;Parent=Phyra80569;rank=4 scaffold_50 . exon 214571 214723 . + . ID=Phyra80569.4;Parent=Phyra80569;constitutive=1;rank=4 scaffold_50 . CDS 214793 216589 . + 0 ID=Phyra80569;Parent=Phyra80569;rank=5 scaffold_50 . exon 214793 216589 . + . ID=Phyra80569.5;Parent=Phyra80569;constitutive=1;rank=5 scaffold_50 . biological_region 218967 218970 0.999 + . logic_name=eponine scaffold_50 . biological_region 218978 218989 0.999 + . logic_name=eponine scaffold_50 . biological_region 218992 218996 0.999 + . logic_name=eponine scaffold_50 . biological_region 220674 220675 0.999 - . logic_name=eponine scaffold_50 . repeat_region 222399 222408 . ? . description=dust scaffold_50 . repeat_region 222410 222431 . ? . description=trf scaffold_50 . repeat_region 222410 222431 . ? . description=dust scaffold_50 . biological_region 225663 225666 0.999 - . logic_name=eponine scaffold_50 . biological_region 225708 225710 0.999 - . logic_name=eponine scaffold_50 ensembl protein_coding_gene 223459 224937 . - . ID=Phyra80571;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000079;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 223459 224937 . - . ID=Phyra80571;Parent=Phyra80571;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 223459 223752 . - 0 ID=Phyra80571;Parent=Phyra80571;rank=4 scaffold_50 . exon 223459 223752 . - . ID=Phyra80571.4;Parent=Phyra80571;constitutive=1;rank=4 scaffold_50 . CDS 223820 224009 . - 0 ID=Phyra80571;Parent=Phyra80571;rank=3 scaffold_50 . exon 223820 224009 . - . ID=Phyra80571.3;Parent=Phyra80571;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 . CDS 224083 224277 . - 0 ID=Phyra80571;Parent=Phyra80571;rank=2 scaffold_50 . exon 224083 224277 . - . ID=Phyra80571.2;Parent=Phyra80571;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_50 . CDS 224348 224937 . - 0 ID=Phyra80571;Parent=Phyra80571;rank=1 scaffold_50 . exon 224348 224937 . - . ID=Phyra80571.1;Parent=Phyra80571;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 225493 226431 . + . ID=Phyra80572;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000080;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 225493 226431 . + . ID=Phyra80572;Parent=Phyra80572;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 225493 226431 . + 0 ID=Phyra80572;Parent=Phyra80572;rank=1 scaffold_50 . exon 225493 226431 . + . ID=Phyra80572.1;Parent=Phyra80572;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 217248 220670 . - . ID=Phyra95752;biotype=protein_coding;external_name=C_scaffold_50000014;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 217248 220670 . - . ID=Phyra95752;Parent=Phyra95752;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 217248 217648 . - 0 ID=Phyra95752;Parent=Phyra95752;rank=7 scaffold_50 . exon 217248 217648 . - . ID=Phyra95752.7;Parent=Phyra95752;constitutive=1;ensembl_phase=1;rank=7 scaffold_50 . CDS 218147 218314 . - 0 ID=Phyra95752;Parent=Phyra95752;rank=6 scaffold_50 . exon 218147 218314 . - . ID=Phyra95752.6;Parent=Phyra95752;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_50 . CDS 218405 219168 . - 0 ID=Phyra95752;Parent=Phyra95752;rank=5 scaffold_50 . exon 218405 219168 . - . ID=Phyra95752.5;Parent=Phyra95752;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_50 . CDS 219768 219869 . - 0 ID=Phyra95752;Parent=Phyra95752;rank=4 scaffold_50 . exon 219768 219869 . - . ID=Phyra95752.4;Parent=Phyra95752;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_50 . CDS 219950 220032 . - 0 ID=Phyra95752;Parent=Phyra95752;rank=3 scaffold_50 . exon 219950 220032 . - . ID=Phyra95752.3;Parent=Phyra95752;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_50 . CDS 220096 220191 . - 0 ID=Phyra95752;Parent=Phyra95752;rank=2 scaffold_50 . exon 220096 220191 . - . ID=Phyra95752.2;Parent=Phyra95752;constitutive=1;rank=2 scaffold_50 . CDS 220506 220670 . - 0 ID=Phyra95752;Parent=Phyra95752;rank=1 scaffold_50 . exon 220506 220670 . - . ID=Phyra95752.1;Parent=Phyra95752;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 228182 229277 . + . ID=Phyra50084;biotype=protein_coding;external_name=gwEuk.50.32.1;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 228182 229277 . + . ID=Phyra50084;Parent=Phyra50084;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 228182 228394 . + 0 ID=Phyra50084;Parent=Phyra50084;rank=1 scaffold_50 . exon 228182 228394 . + . ID=Phyra50084.1;Parent=Phyra50084;constitutive=1;rank=1 scaffold_50 . CDS 228468 228550 . + 0 ID=Phyra50084;Parent=Phyra50084;rank=2 scaffold_50 . exon 228468 228550 . + . ID=Phyra50084.2;Parent=Phyra50084;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_50 . CDS 228620 229277 . + 0 ID=Phyra50084;Parent=Phyra50084;rank=3 scaffold_50 . exon 228620 229277 . + . ID=Phyra50084.3;Parent=Phyra50084;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 ensembl protein_coding_gene 229462 230976 . - . ID=Phyra80574;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000082;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 229462 230976 . - . ID=Phyra80574;Parent=Phyra80574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 229462 230976 . - 0 ID=Phyra80574;Parent=Phyra80574;rank=1 scaffold_50 . exon 229462 230976 . - . ID=Phyra80574.1;Parent=Phyra80574;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 231301 231829 . + . ID=Phyra80575;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000083;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 231301 231829 . + . ID=Phyra80575;Parent=Phyra80575;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 231301 231598 . + 0 ID=Phyra80575;Parent=Phyra80575;rank=1 scaffold_50 . exon 231301 231598 . + . ID=Phyra80575.1;Parent=Phyra80575;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 231825 231829 . + 0 ID=Phyra80575;Parent=Phyra80575;rank=2 scaffold_50 . exon 231825 231829 . + . ID=Phyra80575.2;Parent=Phyra80575;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . repeat_region 236953 237200 . ? . description=dust scaffold_50 . biological_region 237938 237940 0.999 - . logic_name=eponine scaffold_50 . biological_region 238278 238281 0.999 + . logic_name=eponine scaffold_50 . repeat_region 238364 238413 . ? . description=dust scaffold_50 . repeat_region 239813 239862 . ? . description=dust scaffold_50 . repeat_region 241070 244457 . ? . description=dust scaffold_50 . biological_region 244830 244832 0.999 + . logic_name=eponine scaffold_50 . repeat_region 245603 245652 . ? . description=dust scaffold_50 ensembl protein_coding_gene 237234 238503 . - . ID=Phyra80576;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000084;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 237234 238503 . - . ID=Phyra80576;Parent=Phyra80576;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 237234 237569 . - 0 ID=Phyra80576;Parent=Phyra80576;rank=3 scaffold_50 . exon 237234 237569 . - . ID=Phyra80576.3;Parent=Phyra80576;constitutive=1;rank=3 scaffold_50 . CDS 237632 238320 . - 0 ID=Phyra80576;Parent=Phyra80576;rank=2 scaffold_50 . exon 237632 238320 . - . ID=Phyra80576.2;Parent=Phyra80576;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 238476 238503 . - 0 ID=Phyra80576;Parent=Phyra80576;rank=1 scaffold_50 . exon 238476 238503 . - . ID=Phyra80576.1;Parent=Phyra80576;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 244531 245265 . + . ID=Phyra80577;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000085;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 244531 245265 . + . ID=Phyra80577;Parent=Phyra80577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 244531 245265 . + 0 ID=Phyra80577;Parent=Phyra80577;rank=1 scaffold_50 . exon 244531 245265 . + . ID=Phyra80577.1;Parent=Phyra80577;constitutive=1;rank=1 scaffold_50 . repeat_region 246256 246296 . ? . description=trf scaffold_50 . repeat_region 248679 248741 . ? . description=trf scaffold_50 ensembl protein_coding_gene 255568 256961 . - . ID=Phyra50097;biotype=protein_coding;external_name=gwEuk.50.45.1;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 255568 256961 . - . ID=Phyra50097;Parent=Phyra50097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 255568 255673 . - 0 ID=Phyra50097;Parent=Phyra50097;rank=7 scaffold_50 . exon 255568 255673 . - . ID=Phyra50097.7;Parent=Phyra50097;constitutive=1;ensembl_phase=2;rank=7 scaffold_50 . CDS 255755 255859 . - 0 ID=Phyra50097;Parent=Phyra50097;rank=6 scaffold_50 . exon 255755 255859 . - . ID=Phyra50097.6;Parent=Phyra50097;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_50 . CDS 255922 256064 . - 0 ID=Phyra50097;Parent=Phyra50097;rank=5 scaffold_50 . exon 255922 256064 . - . ID=Phyra50097.5;Parent=Phyra50097;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_50 . CDS 256153 256337 . - 0 ID=Phyra50097;Parent=Phyra50097;rank=4 scaffold_50 . CDS 256398 256622 . - 0 ID=Phyra50097;Parent=Phyra50097;rank=3 scaffold_50 . CDS 256695 256855 . - 0 ID=Phyra50097;Parent=Phyra50097;rank=2 scaffold_50 . CDS 256924 256961 . - 0 ID=Phyra50097;Parent=Phyra50097;rank=1 scaffold_50 ensembl protein_coding_gene 251826 255411 . + . ID=Phyra80578;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000086;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 251826 255411 . + . ID=Phyra80578;Parent=Phyra80578;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 251826 253740 . + 0 ID=Phyra80578;Parent=Phyra80578;rank=1 scaffold_50 . exon 251826 253740 . + . ID=Phyra80578.1;Parent=Phyra80578;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 254057 254175 . + 0 ID=Phyra80578;Parent=Phyra80578;rank=2 scaffold_50 . exon 254057 254175 . + . ID=Phyra80578.2;Parent=Phyra80578;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 254265 254266 . + 0 ID=Phyra80578;Parent=Phyra80578;rank=3 scaffold_50 . exon 254265 254266 . + . ID=Phyra80578.3;Parent=Phyra80578;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_50 . CDS 254358 254438 . + 0 ID=Phyra80578;Parent=Phyra80578;rank=4 scaffold_50 . exon 254358 254438 . + . ID=Phyra80578.4;Parent=Phyra80578;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_50 . CDS 254512 254582 . + 0 ID=Phyra80578;Parent=Phyra80578;rank=5 scaffold_50 . exon 254512 254582 . + . ID=Phyra80578.5;Parent=Phyra80578;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_50 . CDS 254666 254801 . + 0 ID=Phyra80578;Parent=Phyra80578;rank=6 scaffold_50 . exon 254666 254801 . + . ID=Phyra80578.6;Parent=Phyra80578;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_50 . CDS 254871 255411 . + 0 ID=Phyra80578;Parent=Phyra80578;rank=7 scaffold_50 . exon 254871 255411 . + . ID=Phyra80578.7;Parent=Phyra80578;constitutive=1;ensembl_phase=2;rank=7 scaffold_50 . repeat_region 256670 256687 . ? . description=dust scaffold_50 . biological_region 257455 257462 0.999 - . logic_name=eponine scaffold_50 . biological_region 261193 261195 0.999 + . logic_name=eponine scaffold_50 . biological_region 261277 261278 0.999 - . logic_name=eponine scaffold_50 . biological_region 263392 263395 0.999 - . logic_name=eponine scaffold_50 . biological_region 265849 265856 0.999 + . logic_name=eponine scaffold_50 . exon 256153 256337 . - . ID=Phyra50097.4;Parent=Phyra50097;constitutive=1;ensembl_phase=1;rank=4 scaffold_50 . exon 256398 256622 . - . ID=Phyra50097.3;Parent=Phyra50097;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_50 . exon 256695 256855 . - . ID=Phyra50097.2;Parent=Phyra50097;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_50 . exon 256924 256961 . - . ID=Phyra50097.1;Parent=Phyra50097;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 257336 258318 . + . ID=Phyra80580;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000088;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 257336 258318 . + . ID=Phyra80580;Parent=Phyra80580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 257336 257519 . + 0 ID=Phyra80580;Parent=Phyra80580;rank=1 scaffold_50 . exon 257336 257519 . + . ID=Phyra80580.1;Parent=Phyra80580;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 257627 258318 . + 0 ID=Phyra80580;Parent=Phyra80580;rank=2 scaffold_50 . exon 257627 258318 . + . ID=Phyra80580.2;Parent=Phyra80580;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 ensembl protein_coding_gene 261139 263763 . + . ID=Phyra80581;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000089;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 261139 263763 . + . ID=Phyra80581;Parent=Phyra80581;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 261139 263763 . + 0 ID=Phyra80581;Parent=Phyra80581;rank=1 scaffold_50 . exon 261139 263763 . + . ID=Phyra80581.1;Parent=Phyra80581;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 263916 266740 . - . ID=Phyra95759;biotype=protein_coding;external_name=C_scaffold_50000021;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 263916 266740 . - . ID=Phyra95759;Parent=Phyra95759;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 263916 264014 . - 0 ID=Phyra95759;Parent=Phyra95759;rank=5 scaffold_50 . exon 263916 264014 . - . ID=Phyra95759.5;Parent=Phyra95759;constitutive=1;rank=5 scaffold_50 . CDS 264083 264812 . - 0 ID=Phyra95759;Parent=Phyra95759;rank=4 scaffold_50 . exon 264083 264812 . - . ID=Phyra95759.4;Parent=Phyra95759;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 264876 265645 . - 0 ID=Phyra95759;Parent=Phyra95759;rank=3 scaffold_50 . exon 264876 265645 . - . ID=Phyra95759.3;Parent=Phyra95759;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_50 . CDS 265867 266186 . - 0 ID=Phyra95759;Parent=Phyra95759;rank=2 scaffold_50 . exon 265867 266186 . - . ID=Phyra95759.2;Parent=Phyra95759;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 266341 266740 . - 0 ID=Phyra95759;Parent=Phyra95759;rank=1 scaffold_50 . repeat_region 266834 266875 . ? . description=trf scaffold_50 . repeat_region 275080 275111 . ? . description=trf scaffold_50 ensembl protein_coding_gene 267986 269450 . - . ID=Phyra80584;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000092;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 267986 269450 . - . ID=Phyra80584;Parent=Phyra80584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 267986 268827 . - 0 ID=Phyra80584;Parent=Phyra80584;rank=2 scaffold_50 . exon 267986 268827 . - . ID=Phyra80584.2;Parent=Phyra80584;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 268895 269450 . - 0 ID=Phyra80584;Parent=Phyra80584;rank=1 scaffold_50 . exon 268895 269450 . - . ID=Phyra80584.1;Parent=Phyra80584;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 270592 276117 . + . ID=Phyra80585;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000093;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 270592 276117 . + . ID=Phyra80585;Parent=Phyra80585;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 270592 276117 . + 0 ID=Phyra80585;Parent=Phyra80585;rank=1 scaffold_50 . exon 270592 276117 . + . ID=Phyra80585.1;Parent=Phyra80585;constitutive=1;rank=1 scaffold_50 . exon 266341 266740 . - . ID=Phyra95759.1;Parent=Phyra95759;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 266874 267526 . + . ID=Phyra95761;biotype=protein_coding;external_name=C_scaffold_50000023;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 266874 267526 . + . ID=Phyra95761;Parent=Phyra95761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 266874 267010 . + 0 ID=Phyra95761;Parent=Phyra95761;rank=1 scaffold_50 . exon 266874 267010 . + . ID=Phyra95761.1;Parent=Phyra95761;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 267078 267151 . + 0 ID=Phyra95761;Parent=Phyra95761;rank=2 scaffold_50 . exon 267078 267151 . + . ID=Phyra95761.2;Parent=Phyra95761;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 267220 267329 . + 0 ID=Phyra95761;Parent=Phyra95761;rank=3 scaffold_50 . exon 267220 267329 . + . ID=Phyra95761.3;Parent=Phyra95761;constitutive=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 267398 267526 . + 0 ID=Phyra95761;Parent=Phyra95761;rank=4 scaffold_50 . exon 267398 267526 . + . ID=Phyra95761.4;Parent=Phyra95761;constitutive=1;rank=4 scaffold_50 . biological_region 277147 277149 0.999 - . logic_name=eponine scaffold_50 . biological_region 278377 278379 0.999 - . logic_name=eponine scaffold_50 . biological_region 278522 278525 0.999 - . logic_name=eponine scaffold_50 . biological_region 278646 278648 0.999 - . logic_name=eponine scaffold_50 ensembl protein_coding_gene 276428 277143 . - . ID=Phyra80586;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000094;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 276428 277143 . - . ID=Phyra80586;Parent=Phyra80586;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 276428 276633 . - 0 ID=Phyra80586;Parent=Phyra80586;rank=4 scaffold_50 . exon 276428 276633 . - . ID=Phyra80586.4;Parent=Phyra80586;constitutive=1;ensembl_phase=1;rank=4 scaffold_50 . CDS 276705 276858 . - 0 ID=Phyra80586;Parent=Phyra80586;rank=3 scaffold_50 . exon 276705 276858 . - . ID=Phyra80586.3;Parent=Phyra80586;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_50 . CDS 276921 276977 . - 0 ID=Phyra80586;Parent=Phyra80586;rank=2 scaffold_50 . exon 276921 276977 . - . ID=Phyra80586.2;Parent=Phyra80586;constitutive=1;rank=2 scaffold_50 . CDS 277039 277143 . - 0 ID=Phyra80586;Parent=Phyra80586;rank=1 scaffold_50 . exon 277039 277143 . - . ID=Phyra80586.1;Parent=Phyra80586;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 278219 278905 . + . ID=Phyra80587;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000095;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 278219 278905 . + . ID=Phyra80587;Parent=Phyra80587;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 278219 278905 . + 0 ID=Phyra80587;Parent=Phyra80587;rank=1 scaffold_50 . exon 278219 278905 . + . ID=Phyra80587.1;Parent=Phyra80587;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 279426 283812 . + . ID=Phyra80588;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000096;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 279426 283812 . + . ID=Phyra80588;Parent=Phyra80588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 279426 279468 . + 0 ID=Phyra80588;Parent=Phyra80588;rank=1 scaffold_50 . exon 279426 279468 . + . ID=Phyra80588.1;Parent=Phyra80588;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 279546 279845 . + 0 ID=Phyra80588;Parent=Phyra80588;rank=2 scaffold_50 . exon 279546 279845 . + . ID=Phyra80588.2;Parent=Phyra80588;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 279920 280763 . + 0 ID=Phyra80588;Parent=Phyra80588;rank=3 scaffold_50 . exon 279920 280763 . + . ID=Phyra80588.3;Parent=Phyra80588;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_50 . CDS 280914 280945 . + 0 ID=Phyra80588;Parent=Phyra80588;rank=4 scaffold_50 . exon 280914 280945 . + . ID=Phyra80588.4;Parent=Phyra80588;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 281006 281059 . + 0 ID=Phyra80588;Parent=Phyra80588;rank=5 scaffold_50 . exon 281006 281059 . + . ID=Phyra80588.5;Parent=Phyra80588;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_50 . CDS 281126 281135 . + 0 ID=Phyra80588;Parent=Phyra80588;rank=6 scaffold_50 . exon 281126 281135 . + . ID=Phyra80588.6;Parent=Phyra80588;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_50 . CDS 281203 281222 . + 0 ID=Phyra80588;Parent=Phyra80588;rank=7 scaffold_50 . exon 281203 281222 . + . ID=Phyra80588.7;Parent=Phyra80588;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_50 . CDS 281275 281464 . + 0 ID=Phyra80588;Parent=Phyra80588;rank=8 scaffold_50 . exon 281275 281464 . + . ID=Phyra80588.8;Parent=Phyra80588;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_50 . CDS 281629 283071 . + 0 ID=Phyra80588;Parent=Phyra80588;rank=9 scaffold_50 . exon 281629 283071 . + . ID=Phyra80588.9;Parent=Phyra80588;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_50 . CDS 283257 283812 . + 0 ID=Phyra80588;Parent=Phyra80588;rank=10 scaffold_50 . exon 283257 283812 . + . ID=Phyra80588.10;Parent=Phyra80588;constitutive=1;ensembl_phase=2;rank=10 scaffold_50 ensembl protein_coding_gene 284126 285299 . - . ID=Phyra80589;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000097;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 284126 285299 . - . ID=Phyra80589;Parent=Phyra80589;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 284126 284449 . - 0 ID=Phyra80589;Parent=Phyra80589;rank=5 scaffold_50 . exon 284126 284449 . - . ID=Phyra80589.5;Parent=Phyra80589;constitutive=1;rank=5 scaffold_50 . CDS 284685 284757 . - 0 ID=Phyra80589;Parent=Phyra80589;rank=4 scaffold_50 . exon 284685 284757 . - . ID=Phyra80589.4;Parent=Phyra80589;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 284820 284897 . - 0 ID=Phyra80589;Parent=Phyra80589;rank=3 scaffold_50 . exon 284820 284897 . - . ID=Phyra80589.3;Parent=Phyra80589;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_50 . CDS 284967 285090 . - 0 ID=Phyra80589;Parent=Phyra80589;rank=2 scaffold_50 . exon 284967 285090 . - . ID=Phyra80589.2;Parent=Phyra80589;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_50 . CDS 285164 285299 . - 0 ID=Phyra80589;Parent=Phyra80589;rank=1 scaffold_50 . exon 285164 285299 . - . ID=Phyra80589.1;Parent=Phyra80589;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . repeat_region 285819 285838 . ? . description=trf scaffold_50 . repeat_region 285819 285838 . ? . description=dust scaffold_50 . repeat_region 289053 289090 . ? . description=trf scaffold_50 . repeat_region 292535 292556 . ? . description=trf scaffold_50 ensembl protein_coding_gene 286700 289513 . + . ID=Phyra80590;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000098;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 286700 289513 . + . ID=Phyra80590;Parent=Phyra80590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 286700 289513 . + 0 ID=Phyra80590;Parent=Phyra80590;rank=1 scaffold_50 . exon 286700 289513 . + . ID=Phyra80590.1;Parent=Phyra80590;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 289890 290363 . - . ID=Phyra80591;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000099;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 289890 290363 . - . ID=Phyra80591;Parent=Phyra80591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 289890 290006 . - 0 ID=Phyra80591;Parent=Phyra80591;rank=2 scaffold_50 . exon 289890 290006 . - . ID=Phyra80591.2;Parent=Phyra80591;constitutive=1;rank=2 scaffold_50 . CDS 290175 290363 . - 0 ID=Phyra80591;Parent=Phyra80591;rank=1 scaffold_50 . exon 290175 290363 . - . ID=Phyra80591.1;Parent=Phyra80591;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 291354 291827 . + . ID=Phyra80592;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000100;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 291354 291827 . + . ID=Phyra80592;Parent=Phyra80592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 291354 291542 . + 0 ID=Phyra80592;Parent=Phyra80592;rank=1 scaffold_50 . exon 291354 291542 . + . ID=Phyra80592.1;Parent=Phyra80592;constitutive=1;rank=1 scaffold_50 . CDS 291711 291827 . + 0 ID=Phyra80592;Parent=Phyra80592;rank=2 scaffold_50 . exon 291711 291827 . + . ID=Phyra80592.2;Parent=Phyra80592;constitutive=1;rank=2 scaffold_50 ensembl protein_coding_gene 292923 294833 . + . ID=Phyra80593;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000101;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 292923 294833 . + . ID=Phyra80593;Parent=Phyra80593;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 292923 294833 . + 0 ID=Phyra80593;Parent=Phyra80593;rank=1 scaffold_50 . exon 292923 294833 . + . ID=Phyra80593.1;Parent=Phyra80593;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 295039 299766 . + . ID=Phyra80594;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000102;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 295039 299766 . + . ID=Phyra80594;Parent=Phyra80594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 295039 299766 . + 0 ID=Phyra80594;Parent=Phyra80594;rank=1 scaffold_50 . exon 295039 299766 . + . ID=Phyra80594.1;Parent=Phyra80594;constitutive=1;rank=1 scaffold_50 . biological_region 297853 297855 0.999 + . logic_name=eponine scaffold_50 . biological_region 298051 298051 0.999 + . logic_name=eponine scaffold_50 . biological_region 301949 301952 0.999 - . logic_name=eponine scaffold_50 . biological_region 301976 301978 0.999 - . logic_name=eponine scaffold_50 . biological_region 302294 302297 0.999 + . logic_name=eponine scaffold_50 . biological_region 302398 302406 0.999 - . logic_name=eponine scaffold_50 . biological_region 302625 302631 0.999 + . logic_name=eponine scaffold_50 . biological_region 302720 302727 0.999 - . logic_name=eponine scaffold_50 . biological_region 302778 302779 0.999 + . logic_name=eponine scaffold_50 ensembl protein_coding_gene 300498 302791 . - . ID=Phyra80595;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000103;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 300498 302791 . - . ID=Phyra80595;Parent=Phyra80595;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 300498 300504 . - 0 ID=Phyra80595;Parent=Phyra80595;rank=7 scaffold_50 . exon 300498 300504 . - . ID=Phyra80595.7;Parent=Phyra80595;constitutive=1;ensembl_phase=2;rank=7 scaffold_50 . CDS 300544 300605 . - 0 ID=Phyra80595;Parent=Phyra80595;rank=6 scaffold_50 . exon 300544 300605 . - . ID=Phyra80595.6;Parent=Phyra80595;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_50 . CDS 300674 300755 . - 0 ID=Phyra80595;Parent=Phyra80595;rank=5 scaffold_50 . exon 300674 300755 . - . ID=Phyra80595.5;Parent=Phyra80595;constitutive=1;ensembl_phase=2;rank=5 scaffold_50 . CDS 301096 301124 . - 0 ID=Phyra80595;Parent=Phyra80595;rank=4 scaffold_50 . exon 301096 301124 . - . ID=Phyra80595.4;Parent=Phyra80595;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_50 . CDS 301574 301651 . - 0 ID=Phyra80595;Parent=Phyra80595;rank=3 scaffold_50 . exon 301574 301651 . - . ID=Phyra80595.3;Parent=Phyra80595;constitutive=1;rank=3 scaffold_50 . CDS 301732 302091 . - 0 ID=Phyra80595;Parent=Phyra80595;rank=2 scaffold_50 . exon 301732 302091 . - . ID=Phyra80595.2;Parent=Phyra80595;constitutive=1;rank=2 scaffold_50 . CDS 302165 302791 . - 0 ID=Phyra80595;Parent=Phyra80595;rank=1 scaffold_50 . exon 302165 302791 . - . ID=Phyra80595.1;Parent=Phyra80595;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 305171 306724 . - . ID=Phyra80596;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000104;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 305171 306724 . - . ID=Phyra80596;Parent=Phyra80596;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 305171 305536 . - 0 ID=Phyra80596;Parent=Phyra80596;rank=5 scaffold_50 . exon 305171 305536 . - . ID=Phyra80596.5;Parent=Phyra80596;constitutive=1;rank=5 scaffold_50 . CDS 305556 305766 . - 0 ID=Phyra80596;Parent=Phyra80596;rank=4 scaffold_50 . CDS 306006 306080 . - 0 ID=Phyra80596;Parent=Phyra80596;rank=3 scaffold_50 . CDS 306137 306293 . - 0 ID=Phyra80596;Parent=Phyra80596;rank=2 scaffold_50 . CDS 306313 306724 . - 0 ID=Phyra80596;Parent=Phyra80596;rank=1 scaffold_50 . repeat_region 306605 306664 . ? . description=trf scaffold_50 . exon 305556 305766 . - . ID=Phyra80596.4;Parent=Phyra80596;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 . exon 306006 306080 . - . ID=Phyra80596.3;Parent=Phyra80596;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_50 . exon 306137 306293 . - . ID=Phyra80596.2;Parent=Phyra80596;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_50 . exon 306313 306724 . - . ID=Phyra80596.1;Parent=Phyra80596;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 307405 307923 . + . ID=Phyra80597;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000105;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 307405 307923 . + . ID=Phyra80597;Parent=Phyra80597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 307405 307551 . + 0 ID=Phyra80597;Parent=Phyra80597;rank=1 scaffold_50 . exon 307405 307551 . + . ID=Phyra80597.1;Parent=Phyra80597;constitutive=1;rank=1 scaffold_50 . CDS 307660 307923 . + 0 ID=Phyra80597;Parent=Phyra80597;rank=2 scaffold_50 . exon 307660 307923 . + . ID=Phyra80597.2;Parent=Phyra80597;constitutive=1;rank=2 scaffold_50 ensembl protein_coding_gene 309819 318883 . - . ID=Phyra80598;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000106;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 309819 318883 . - . ID=Phyra80598;Parent=Phyra80598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 309819 315134 . - 0 ID=Phyra80598;Parent=Phyra80598;rank=2 scaffold_50 . exon 309819 315134 . - . ID=Phyra80598.2;Parent=Phyra80598;constitutive=1;rank=2 scaffold_50 . CDS 315206 318883 . - 0 ID=Phyra80598;Parent=Phyra80598;rank=1 scaffold_50 . biological_region 321543 321545 0.999 - . logic_name=eponine scaffold_50 . repeat_region 324201 324209 . ? . description=dust scaffold_50 . exon 315206 318883 . - . ID=Phyra80598.1;Parent=Phyra80598;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 319096 321531 . - . ID=Phyra80599;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000107;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 319096 321531 . - . ID=Phyra80599;Parent=Phyra80599;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 319096 321531 . - 0 ID=Phyra80599;Parent=Phyra80599;rank=1 scaffold_50 . exon 319096 321531 . - . ID=Phyra80599.1;Parent=Phyra80599;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 321676 322386 . + . ID=Phyra80600;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000108;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 321676 322386 . + . ID=Phyra80600;Parent=Phyra80600;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 321676 322386 . + 0 ID=Phyra80600;Parent=Phyra80600;rank=1 scaffold_50 . exon 321676 322386 . + . ID=Phyra80600.1;Parent=Phyra80600;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 323240 325792 . - . ID=Phyra80601;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000109;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 323240 325792 . - . ID=Phyra80601;Parent=Phyra80601;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 323240 323544 . - 0 ID=Phyra80601;Parent=Phyra80601;rank=5 scaffold_50 . exon 323240 323544 . - . ID=Phyra80601.5;Parent=Phyra80601;constitutive=1;ensembl_phase=1;rank=5 scaffold_50 . CDS 323603 323779 . - 0 ID=Phyra80601;Parent=Phyra80601;rank=4 scaffold_50 . exon 323603 323779 . - . ID=Phyra80601.4;Parent=Phyra80601;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_50 . CDS 323847 323997 . - 0 ID=Phyra80601;Parent=Phyra80601;rank=3 scaffold_50 . exon 323847 323997 . - . ID=Phyra80601.3;Parent=Phyra80601;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_50 . CDS 324065 324160 . - 0 ID=Phyra80601;Parent=Phyra80601;rank=2 scaffold_50 . exon 324065 324160 . - . ID=Phyra80601.2;Parent=Phyra80601;constitutive=1;rank=2 scaffold_50 . CDS 324287 325792 . - 0 ID=Phyra80601;Parent=Phyra80601;rank=1 scaffold_50 . exon 324287 325792 . - . ID=Phyra80601.1;Parent=Phyra80601;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 326360 327566 . - . ID=Phyra71814;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_50000008;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 326360 327566 . - . ID=Phyra71814;Parent=Phyra71814;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 326360 327292 . - 0 ID=Phyra71814;Parent=Phyra71814;rank=2 scaffold_50 . exon 326360 327292 . - . ID=Phyra71814.2;Parent=Phyra71814;constitutive=1;rank=2 scaffold_50 . CDS 327381 327566 . - 0 ID=Phyra71814;Parent=Phyra71814;rank=1 scaffold_50 . exon 327381 327566 . - . ID=Phyra71814.1;Parent=Phyra71814;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 327885 335841 . + . ID=Phyra80603;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000111;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 327885 335841 . + . ID=Phyra80603;Parent=Phyra80603;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 327885 328143 . + 0 ID=Phyra80603;Parent=Phyra80603;rank=1 scaffold_50 . exon 327885 328143 . + . ID=Phyra80603.1;Parent=Phyra80603;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 328231 333764 . + 0 ID=Phyra80603;Parent=Phyra80603;rank=2 scaffold_50 . exon 328231 333764 . + . ID=Phyra80603.2;Parent=Phyra80603;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 334212 335608 . + 0 ID=Phyra80603;Parent=Phyra80603;rank=3 scaffold_50 . exon 334212 335608 . + . ID=Phyra80603.3;Parent=Phyra80603;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_50 . CDS 335727 335841 . + 0 ID=Phyra80603;Parent=Phyra80603;rank=4 scaffold_50 . biological_region 335776 335779 0.999 - . logic_name=eponine scaffold_50 . repeat_region 339340 339347 . ? . description=dust scaffold_50 . repeat_region 339626 339634 . ? . description=dust scaffold_50 . biological_region 340264 340270 0.999 + . logic_name=eponine scaffold_50 . biological_region 340895 340899 0.999 - . logic_name=eponine scaffold_50 . biological_region 340930 340936 0.999 - . logic_name=eponine scaffold_50 . biological_region 342325 342327 0.999 + . logic_name=eponine scaffold_50 . biological_region 344301 344308 0.999 + . logic_name=eponine scaffold_50 . biological_region 344380 344384 0.999 + . logic_name=eponine scaffold_50 . biological_region 344543 344549 0.999 + . logic_name=eponine scaffold_50 . exon 335727 335841 . + . ID=Phyra80603.4;Parent=Phyra80603;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 ensembl protein_coding_gene 339901 344658 . - . ID=Phyra80604;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000112;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 339901 344658 . - . ID=Phyra80604;Parent=Phyra80604;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 339901 344441 . - 0 ID=Phyra80604;Parent=Phyra80604;rank=2 scaffold_50 . exon 339901 344441 . - . ID=Phyra80604.2;Parent=Phyra80604;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 344526 344658 . - 0 ID=Phyra80604;Parent=Phyra80604;rank=1 scaffold_50 . exon 344526 344658 . - . ID=Phyra80604.1;Parent=Phyra80604;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . repeat_region 351344 351389 . ? . description=trf scaffold_50 ensembl protein_coding_gene 345703 346734 . + . ID=Phyra50123;biotype=protein_coding;external_name=gwEuk.50.71.1;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 345703 346734 . + . ID=Phyra50123;Parent=Phyra50123;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 345703 346734 . + 0 ID=Phyra50123;Parent=Phyra50123;rank=1 scaffold_50 . exon 345703 346734 . + . ID=Phyra50123.1;Parent=Phyra50123;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 347224 349161 . - . ID=Phyra80606;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000114;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 347224 349161 . - . ID=Phyra80606;Parent=Phyra80606;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 347224 349161 . - 0 ID=Phyra80606;Parent=Phyra80606;rank=1 scaffold_50 . exon 347224 349161 . - . ID=Phyra80606.1;Parent=Phyra80606;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 351164 354493 . + . ID=Phyra80607;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000115;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 351164 354493 . + . ID=Phyra80607;Parent=Phyra80607;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 351164 354493 . + 0 ID=Phyra80607;Parent=Phyra80607;rank=1 scaffold_50 . exon 351164 354493 . + . ID=Phyra80607.1;Parent=Phyra80607;constitutive=1;rank=1 scaffold_50 . biological_region 356110 356114 0.999 + . logic_name=eponine scaffold_50 . biological_region 356395 356398 0.999 + . logic_name=eponine scaffold_50 . biological_region 356476 356479 0.999 + . logic_name=eponine scaffold_50 . repeat_region 357180 357187 . ? . description=dust scaffold_50 ensembl protein_coding_gene 358855 359706 . - . ID=Phyra71815;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_50000009;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 358855 359706 . - . ID=Phyra71815;Parent=Phyra71815;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 358855 359706 . - 0 ID=Phyra71815;Parent=Phyra71815;rank=1 scaffold_50 . exon 358855 359706 . - . ID=Phyra71815.1;Parent=Phyra71815;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 355245 356695 . - . ID=Phyra80608;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000116;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 355245 356695 . - . ID=Phyra80608;Parent=Phyra80608;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 355245 355476 . - 0 ID=Phyra80608;Parent=Phyra80608;rank=3 scaffold_50 . exon 355245 355476 . - . ID=Phyra80608.3;Parent=Phyra80608;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 . CDS 355556 355666 . - 0 ID=Phyra80608;Parent=Phyra80608;rank=2 scaffold_50 . exon 355556 355666 . - . ID=Phyra80608.2;Parent=Phyra80608;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_50 . CDS 355743 356695 . - 0 ID=Phyra80608;Parent=Phyra80608;rank=1 scaffold_50 . exon 355743 356695 . - . ID=Phyra80608.1;Parent=Phyra80608;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 357588 358473 . - . ID=Phyra80609;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000117;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 357588 358473 . - . ID=Phyra80609;Parent=Phyra80609;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 357588 357668 . - 0 ID=Phyra80609;Parent=Phyra80609;rank=5 scaffold_50 . exon 357588 357668 . - . ID=Phyra80609.5;Parent=Phyra80609;constitutive=1;rank=5 scaffold_50 . CDS 357755 357839 . - 0 ID=Phyra80609;Parent=Phyra80609;rank=4 scaffold_50 . exon 357755 357839 . - . ID=Phyra80609.4;Parent=Phyra80609;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 357902 357945 . - 0 ID=Phyra80609;Parent=Phyra80609;rank=3 scaffold_50 . exon 357902 357945 . - . ID=Phyra80609.3;Parent=Phyra80609;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_50 . CDS 358169 358282 . - 0 ID=Phyra80609;Parent=Phyra80609;rank=2 scaffold_50 . exon 358169 358282 . - . ID=Phyra80609.2;Parent=Phyra80609;constitutive=1;rank=2 scaffold_50 . CDS 358318 358473 . - 0 ID=Phyra80609;Parent=Phyra80609;rank=1 scaffold_50 . exon 358318 358473 . - . ID=Phyra80609.1;Parent=Phyra80609;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 361328 361864 . + . ID=Phyra80611;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000119;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 361328 361864 . + . ID=Phyra80611;Parent=Phyra80611;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 361328 361864 . + 0 ID=Phyra80611;Parent=Phyra80611;rank=1 scaffold_50 . exon 361328 361864 . + . ID=Phyra80611.1;Parent=Phyra80611;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 362026 363270 . - . ID=Phyra80612;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000120;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 362026 363270 . - . ID=Phyra80612;Parent=Phyra80612;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 362026 362544 . - 0 ID=Phyra80612;Parent=Phyra80612;rank=4 scaffold_50 . exon 362026 362544 . - . ID=Phyra80612.4;Parent=Phyra80612;constitutive=1;rank=4 scaffold_50 . CDS 362612 362762 . - 0 ID=Phyra80612;Parent=Phyra80612;rank=3 scaffold_50 . exon 362612 362762 . - . ID=Phyra80612.3;Parent=Phyra80612;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 . CDS 362845 363035 . - 0 ID=Phyra80612;Parent=Phyra80612;rank=2 scaffold_50 . exon 362845 363035 . - . ID=Phyra80612.2;Parent=Phyra80612;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_50 . CDS 363115 363270 . - 0 ID=Phyra80612;Parent=Phyra80612;rank=1 scaffold_50 . exon 363115 363270 . - . ID=Phyra80612.1;Parent=Phyra80612;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 363578 365150 . + . ID=Phyra80613;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000121;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 363578 365150 . + . ID=Phyra80613;Parent=Phyra80613;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 363578 364093 . + 0 ID=Phyra80613;Parent=Phyra80613;rank=1 scaffold_50 . exon 363578 364093 . + . ID=Phyra80613.1;Parent=Phyra80613;constitutive=1;rank=1 scaffold_50 . CDS 364200 365150 . + 0 ID=Phyra80613;Parent=Phyra80613;rank=2 scaffold_50 . exon 364200 365150 . + . ID=Phyra80613.2;Parent=Phyra80613;constitutive=1;rank=2 scaffold_50 ensembl protein_coding_gene 373514 374159 . + . ID=Phyra50148;biotype=protein_coding;external_name=gwEuk.50.96.1;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 373514 374159 . + . ID=Phyra50148;Parent=Phyra50148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 373514 373846 . + 0 ID=Phyra50148;Parent=Phyra50148;rank=1 scaffold_50 . exon 373514 373846 . + . ID=Phyra50148.1;Parent=Phyra50148;constitutive=1;rank=1 scaffold_50 . CDS 373917 374159 . + 0 ID=Phyra50148;Parent=Phyra50148;rank=2 scaffold_50 . exon 373917 374159 . + . ID=Phyra50148.2;Parent=Phyra50148;constitutive=1;rank=2 scaffold_50 ensembl protein_coding_gene 368417 369493 . - . ID=Phyra71816;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_50000010;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 368417 369493 . - . ID=Phyra71816;Parent=Phyra71816;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 368417 369493 . - 0 ID=Phyra71816;Parent=Phyra71816;rank=1 scaffold_50 . exon 368417 369493 . - . ID=Phyra71816.1;Parent=Phyra71816;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 371549 372625 . + . ID=Phyra71817;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_50000011;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 371549 372625 . + . ID=Phyra71817;Parent=Phyra71817;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 371549 372625 . + 0 ID=Phyra71817;Parent=Phyra71817;rank=1 scaffold_50 . exon 371549 372625 . + . ID=Phyra71817.1;Parent=Phyra71817;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 365216 367516 . - . ID=Phyra80614;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_50000122;logic_name=jgi_phyra1 scaffold_50 ensembl transcript 365216 367516 . - . ID=Phyra80614;Parent=Phyra80614;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_50 . CDS 365216 365643 . - 0 ID=Phyra80614;Parent=Phyra80614;rank=5 scaffold_50 . exon 365216 365643 . - . ID=Phyra80614.5;Parent=Phyra80614;constitutive=1;ensembl_phase=1;rank=5 scaffold_50 . CDS 365669 365697 . - 0 ID=Phyra80614;Parent=Phyra80614;rank=4 scaffold_50 . exon 365669 365697 . - . ID=Phyra80614.4;Parent=Phyra80614;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 365776 365784 . - 0 ID=Phyra80614;Parent=Phyra80614;rank=3 scaffold_50 . exon 365776 365784 . - . ID=Phyra80614.3;Parent=Phyra80614;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_50 . CDS 365846 365943 . - 0 ID=Phyra80614;Parent=Phyra80614;rank=2 scaffold_50 . exon 365846 365943 . - . ID=Phyra80614.2;Parent=Phyra80614;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_50 . CDS 366110 367516 . - 0 ID=Phyra80614;Parent=Phyra80614;rank=1 scaffold_50 . exon 366110 367516 . - . ID=Phyra80614.1;Parent=Phyra80614;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_48 1 382763 scaffold_48 . repeat_region 203 481 . + . description=GypsyPi-1c_I-int scaffold_48 . repeat_region 1025 1331 . ? . description=dust scaffold_48 . repeat_region 3355 3438 . ? . description=dust scaffold_48 . repeat_region 4000 4095 . ? . description=trf scaffold_48 . repeat_region 4210 4270 . ? . description=trf scaffold_48 . repeat_region 4214 4302 . ? . description=dust scaffold_48 . repeat_region 4852 4960 . ? . description=dust scaffold_48 . repeat_region 5009 5069 . ? . description=trf scaffold_48 . repeat_region 5013 5062 . ? . description=trf scaffold_48 . repeat_region 5013 5065 . ? . description=trf scaffold_48 . repeat_region 5013 5117 . ? . description=dust scaffold_48 . repeat_region 7735 7818 . - . description=Polinton-1_PI scaffold_48 . repeat_region 7892 8059 . ? . description=trf scaffold_48 . repeat_region 8261 8280 . ? . description=trf scaffold_48 . repeat_region 8297 8351 . ? . description=trf scaffold_48 . repeat_region 8362 25727 . ? . description=dust scaffold_48 ensembl tRNA_gene 4101 4173 . - . ID=EPrPRAG00000000175;biotype=tRNA;description=tRNA-Ala for anticodon CGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_48 ensembl transcript 4101 4173 . - . ID=EPrPRAT00000000175;Parent=EPrPRAG00000000175;biotype=tRNA;logic_name=ncrna_eg scaffold_48 . exon 4101 4173 . - . ID=EPrPRAE00000000175;Parent=EPrPRAT00000000175;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . repeat_region 8362 25727 . ? . description=dust scaffold_48 . biological_region 27016 27019 0.999 - . logic_name=eponine scaffold_48 . repeat_region 27058 27107 . ? . description=dust scaffold_48 . repeat_region 27294 27355 . ? . description=dust scaffold_48 . repeat_region 27807 27920 . ? . description=trf scaffold_48 . repeat_region 27810 27920 . ? . description=trf scaffold_48 . repeat_region 28041 28125 . ? . description=dust scaffold_48 . repeat_region 28956 28968 . ? . description=dust scaffold_48 ensembl tRNA_gene 27926 27998 . - . ID=EPrPRAG00000000010;biotype=tRNA;description=tRNA-Ala for anticodon CGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_48 ensembl transcript 27926 27998 . - . ID=EPrPRAT00000000010;Parent=EPrPRAG00000000010;biotype=tRNA;logic_name=ncrna_eg scaffold_48 . exon 27926 27998 . - . ID=EPrPRAE00000000010;Parent=EPrPRAT00000000010;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 ensembl protein_coding_gene 25928 27551 . + . ID=Phyra80289;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000001;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 25928 27551 . + . ID=Phyra80289;Parent=Phyra80289;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 25928 27039 . + 0 ID=Phyra80289;Parent=Phyra80289;rank=1 scaffold_48 . exon 25928 27039 . + . ID=Phyra80289.1;Parent=Phyra80289;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . CDS 27542 27551 . + 0 ID=Phyra80289;Parent=Phyra80289;rank=2 scaffold_48 . exon 27542 27551 . + . ID=Phyra80289.2;Parent=Phyra80289;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 ensembl protein_coding_gene 34189 35115 . - . ID=Phyra80290;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000002;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 34189 35115 . - . ID=Phyra80290;Parent=Phyra80290;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 34189 35115 . - 0 ID=Phyra80290;Parent=Phyra80290;rank=1 scaffold_48 . exon 34189 35115 . - . ID=Phyra80290.1;Parent=Phyra80290;constitutive=1;rank=1 scaffold_48 . repeat_region 43680 43827 . ? . description=trf scaffold_48 . repeat_region 44331 44638 . - . description=GypsyPi-1c_LTR scaffold_48 . repeat_region 48343 48350 . ? . description=dust scaffold_48 ensembl snoRNA_gene 48231 48310 . + . ID=EPrPRAG00000000133;biotype=snoRNA;description=Small nucleolar RNA SNORD36 [Source:RFAM%3BAcc:RF00049];external_name=SNORD36;logic_name=ncrna_eg scaffold_48 ensembl snoRNA 48231 48310 . + . ID=EPrPRAT00000000133;Parent=EPrPRAG00000000133;biotype=snoRNA;logic_name=ncrna_eg scaffold_48 ensembl snoRNA_gene 47947 48051 . + . ID=EPrPRAG00000000166;biotype=snoRNA;description=Small nucleolar RNA snR60/Z5/Z230/Z193/J17 [Source:RFAM%3BAcc:RF00309];external_name=snosnR60_Z15;logic_name=ncrna_eg scaffold_48 ensembl snoRNA 47947 48051 . + . ID=EPrPRAT00000000166;Parent=EPrPRAG00000000166;biotype=snoRNA;logic_name=ncrna_eg scaffold_48 . exon 48231 48310 . + . ID=EPrPRAE00000000133;Parent=EPrPRAT00000000133;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . exon 47947 48051 . + . ID=EPrPRAE00000000166;Parent=EPrPRAT00000000166;constitutive=1;rank=1 scaffold_48 . biological_region 53978 53985 0.999 + . logic_name=eponine scaffold_48 . biological_region 54023 54025 0.999 - . logic_name=eponine scaffold_48 . biological_region 54078 54083 0.999 + . logic_name=eponine scaffold_48 . biological_region 54115 54119 0.999 + . logic_name=eponine scaffold_48 . biological_region 54187 54194 0.999 + . logic_name=eponine scaffold_48 . biological_region 54726 54726 0.999 + . logic_name=eponine scaffold_48 . biological_region 54732 54735 0.999 - . logic_name=eponine scaffold_48 . biological_region 56735 56735 0.999 - . logic_name=eponine scaffold_48 ensembl protein_coding_gene 50791 54842 . + . ID=Phyra80291;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000003;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 50791 54842 . + . ID=Phyra80291;Parent=Phyra80291;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 50791 52879 . + 0 ID=Phyra80291;Parent=Phyra80291;rank=1 scaffold_48 . exon 50791 52879 . + . ID=Phyra80291.1;Parent=Phyra80291;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 52943 53022 . + 0 ID=Phyra80291;Parent=Phyra80291;rank=2 scaffold_48 . exon 52943 53022 . + . ID=Phyra80291.2;Parent=Phyra80291;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 53094 53228 . + 0 ID=Phyra80291;Parent=Phyra80291;rank=3 scaffold_48 . exon 53094 53228 . + . ID=Phyra80291.3;Parent=Phyra80291;constitutive=1;rank=3 scaffold_48 . CDS 53308 53688 . + 0 ID=Phyra80291;Parent=Phyra80291;rank=4 scaffold_48 . exon 53308 53688 . + . ID=Phyra80291.4;Parent=Phyra80291;constitutive=1;rank=4 scaffold_48 . CDS 53889 54842 . + 0 ID=Phyra80291;Parent=Phyra80291;rank=5 scaffold_48 . exon 53889 54842 . + . ID=Phyra80291.5;Parent=Phyra80291;constitutive=1;rank=5 scaffold_48 . repeat_region 59669 60807 . ? . description=trf scaffold_48 ensembl protein_coding_gene 59662 60807 . - . ID=Phyra71787;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_48000001;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 59662 60807 . - . ID=Phyra71787;Parent=Phyra71787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 59662 60807 . - 0 ID=Phyra71787;Parent=Phyra71787;rank=1 scaffold_48 . exon 59662 60807 . - . ID=Phyra71787.1;Parent=Phyra71787;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 61429 64068 . + . ID=Phyra80293;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000005;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 61429 64068 . + . ID=Phyra80293;Parent=Phyra80293;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 61429 61527 . + 0 ID=Phyra80293;Parent=Phyra80293;rank=1 scaffold_48 . exon 61429 61527 . + . ID=Phyra80293.1;Parent=Phyra80293;constitutive=1;rank=1 scaffold_48 . CDS 61594 64068 . + 0 ID=Phyra80293;Parent=Phyra80293;rank=2 scaffold_48 . exon 61594 64068 . + . ID=Phyra80293.2;Parent=Phyra80293;constitutive=1;rank=2 scaffold_48 ensembl protein_coding_gene 64299 67798 . - . ID=Phyra80294;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000006;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 64299 67798 . - . ID=Phyra80294;Parent=Phyra80294;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 64299 65033 . - 0 ID=Phyra80294;Parent=Phyra80294;rank=2 scaffold_48 . exon 64299 65033 . - . ID=Phyra80294.2;Parent=Phyra80294;constitutive=1;rank=2 scaffold_48 . CDS 65156 67798 . - 0 ID=Phyra80294;Parent=Phyra80294;rank=1 scaffold_48 . exon 65156 67798 . - . ID=Phyra80294.1;Parent=Phyra80294;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 67920 70579 . + . ID=Phyra80295;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000007;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 67920 70579 . + . ID=Phyra80295;Parent=Phyra80295;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 67920 68168 . + 0 ID=Phyra80295;Parent=Phyra80295;rank=1 scaffold_48 . exon 67920 68168 . + . ID=Phyra80295.1;Parent=Phyra80295;constitutive=1;rank=1 scaffold_48 . CDS 68249 68396 . + 0 ID=Phyra80295;Parent=Phyra80295;rank=2 scaffold_48 . exon 68249 68396 . + . ID=Phyra80295.2;Parent=Phyra80295;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_48 . CDS 68542 68607 . + 0 ID=Phyra80295;Parent=Phyra80295;rank=3 scaffold_48 . exon 68542 68607 . + . ID=Phyra80295.3;Parent=Phyra80295;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 68671 68870 . + 0 ID=Phyra80295;Parent=Phyra80295;rank=4 scaffold_48 . exon 68671 68870 . + . ID=Phyra80295.4;Parent=Phyra80295;constitutive=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 68939 69099 . + 0 ID=Phyra80295;Parent=Phyra80295;rank=5 scaffold_48 . CDS 69171 69219 . + 0 ID=Phyra80295;Parent=Phyra80295;rank=6 scaffold_48 . CDS 69295 69597 . + 0 ID=Phyra80295;Parent=Phyra80295;rank=7 scaffold_48 . CDS 69676 69806 . + 0 ID=Phyra80295;Parent=Phyra80295;rank=8 scaffold_48 . CDS 69882 70119 . + 0 ID=Phyra80295;Parent=Phyra80295;rank=9 scaffold_48 . CDS 70181 70325 . + 0 ID=Phyra80295;Parent=Phyra80295;rank=10 scaffold_48 . CDS 70401 70579 . + 0 ID=Phyra80295;Parent=Phyra80295;rank=11 scaffold_48 . biological_region 71237 71239 0.999 + . logic_name=eponine scaffold_48 . repeat_region 71442 71465 . ? . description=dust scaffold_48 . exon 68939 69099 . + . ID=Phyra80295.5;Parent=Phyra80295;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_48 . exon 69171 69219 . + . ID=Phyra80295.6;Parent=Phyra80295;constitutive=1;ensembl_phase=2;rank=6 scaffold_48 . exon 69295 69597 . + . ID=Phyra80295.7;Parent=Phyra80295;constitutive=1;rank=7 scaffold_48 . exon 69676 69806 . + . ID=Phyra80295.8;Parent=Phyra80295;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_48 . exon 69882 70119 . + . ID=Phyra80295.9;Parent=Phyra80295;constitutive=1;ensembl_phase=2;rank=9 scaffold_48 . exon 70181 70325 . + . ID=Phyra80295.10;Parent=Phyra80295;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_48 . exon 70401 70579 . + . ID=Phyra80295.11;Parent=Phyra80295;constitutive=1;ensembl_phase=1;rank=11 scaffold_48 ensembl protein_coding_gene 72456 72965 . + . ID=Phyra80297;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000009;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 72456 72965 . + . ID=Phyra80297;Parent=Phyra80297;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 72456 72965 . + 0 ID=Phyra80297;Parent=Phyra80297;rank=1 scaffold_48 . exon 72456 72965 . + . ID=Phyra80297.1;Parent=Phyra80297;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 73202 75172 . - . ID=Phyra80298;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000010;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 73202 75172 . - . ID=Phyra80298;Parent=Phyra80298;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 73202 74887 . - 0 ID=Phyra80298;Parent=Phyra80298;rank=2 scaffold_48 . exon 73202 74887 . - . ID=Phyra80298.2;Parent=Phyra80298;constitutive=1;rank=2 scaffold_48 . CDS 74954 75172 . - 0 ID=Phyra80298;Parent=Phyra80298;rank=1 scaffold_48 . exon 74954 75172 . - . ID=Phyra80298.1;Parent=Phyra80298;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 70774 72021 . - . ID=Phyra95666;biotype=protein_coding;external_name=C_scaffold_48000003;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 70774 72021 . - . ID=Phyra95666;Parent=Phyra95666;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 70774 70896 . - 0 ID=Phyra95666;Parent=Phyra95666;rank=3 scaffold_48 . exon 70774 70896 . - . ID=Phyra95666.3;Parent=Phyra95666;constitutive=1;rank=3 scaffold_48 . CDS 70992 71413 . - 0 ID=Phyra95666;Parent=Phyra95666;rank=2 scaffold_48 . exon 70992 71413 . - . ID=Phyra95666.2;Parent=Phyra95666;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 71577 72021 . - 0 ID=Phyra95666;Parent=Phyra95666;rank=1 scaffold_48 . exon 71577 72021 . - . ID=Phyra95666.1;Parent=Phyra95666;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 ensembl protein_coding_gene 75445 79576 . + . ID=Phyra95670;biotype=protein_coding;external_name=C_scaffold_48000007;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 75445 79576 . + . ID=Phyra95670;Parent=Phyra95670;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 75445 75564 . + 0 ID=Phyra95670;Parent=Phyra95670;rank=1 scaffold_48 . exon 75445 75564 . + . ID=Phyra95670.1;Parent=Phyra95670;constitutive=1;rank=1 scaffold_48 . CDS 75669 75763 . + 0 ID=Phyra95670;Parent=Phyra95670;rank=2 scaffold_48 . exon 75669 75763 . + . ID=Phyra95670.2;Parent=Phyra95670;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_48 . CDS 75826 75908 . + 0 ID=Phyra95670;Parent=Phyra95670;rank=3 scaffold_48 . exon 75826 75908 . + . ID=Phyra95670.3;Parent=Phyra95670;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 75971 76052 . + 0 ID=Phyra95670;Parent=Phyra95670;rank=4 scaffold_48 . exon 75971 76052 . + . ID=Phyra95670.4;Parent=Phyra95670;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_48 . CDS 76134 76192 . + 0 ID=Phyra95670;Parent=Phyra95670;rank=5 scaffold_48 . exon 76134 76192 . + . ID=Phyra95670.5;Parent=Phyra95670;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_48 . CDS 76403 76431 . + 0 ID=Phyra95670;Parent=Phyra95670;rank=6 scaffold_48 . exon 76403 76431 . + . ID=Phyra95670.6;Parent=Phyra95670;constitutive=1;ensembl_phase=1;rank=6 scaffold_48 . CDS 76472 76706 . + 0 ID=Phyra95670;Parent=Phyra95670;rank=7 scaffold_48 . exon 76472 76706 . + . ID=Phyra95670.7;Parent=Phyra95670;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_48 . CDS 76897 76901 . + 0 ID=Phyra95670;Parent=Phyra95670;rank=8 scaffold_48 . exon 76897 76901 . + . ID=Phyra95670.8;Parent=Phyra95670;constitutive=1;ensembl_phase=1;rank=8 scaffold_48 . CDS 76969 77188 . + 0 ID=Phyra95670;Parent=Phyra95670;rank=9 scaffold_48 . exon 76969 77188 . + . ID=Phyra95670.9;Parent=Phyra95670;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_48 . CDS 77315 77515 . + 0 ID=Phyra95670;Parent=Phyra95670;rank=10 scaffold_48 . exon 77315 77515 . + . ID=Phyra95670.10;Parent=Phyra95670;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_48 . CDS 77848 78076 . + 0 ID=Phyra95670;Parent=Phyra95670;rank=11 scaffold_48 . exon 77848 78076 . + . ID=Phyra95670.11;Parent=Phyra95670;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_48 . CDS 78244 78460 . + 0 ID=Phyra95670;Parent=Phyra95670;rank=12 scaffold_48 . exon 78244 78460 . + . ID=Phyra95670.12;Parent=Phyra95670;constitutive=1;ensembl_phase=2;rank=12 scaffold_48 . CDS 78655 79066 . + 0 ID=Phyra95670;Parent=Phyra95670;rank=13 scaffold_48 . CDS 79205 79336 . + 0 ID=Phyra95670;Parent=Phyra95670;rank=14 scaffold_48 . CDS 79416 79576 . + 0 ID=Phyra95670;Parent=Phyra95670;rank=15 scaffold_48 . repeat_region 86854 86882 . ? . description=trf scaffold_48 ensembl protein_coding_gene 81351 84165 . - . ID=Phyra80300;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000012;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 81351 84165 . - . ID=Phyra80300;Parent=Phyra80300;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 81351 81496 . - 0 ID=Phyra80300;Parent=Phyra80300;rank=2 scaffold_48 . exon 81351 81496 . - . ID=Phyra80300.2;Parent=Phyra80300;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 81579 84165 . - 0 ID=Phyra80300;Parent=Phyra80300;rank=1 scaffold_48 . exon 81579 84165 . - . ID=Phyra80300.1;Parent=Phyra80300;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 ensembl protein_coding_gene 85481 86173 . - . ID=Phyra80301;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000013;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 85481 86173 . - . ID=Phyra80301;Parent=Phyra80301;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 85481 86173 . - 0 ID=Phyra80301;Parent=Phyra80301;rank=1 scaffold_48 . exon 85481 86173 . - . ID=Phyra80301.1;Parent=Phyra80301;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 86456 90581 . + . ID=Phyra80302;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000014;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 86456 90581 . + . ID=Phyra80302;Parent=Phyra80302;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 86456 86639 . + 0 ID=Phyra80302;Parent=Phyra80302;rank=1 scaffold_48 . exon 86456 86639 . + . ID=Phyra80302.1;Parent=Phyra80302;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 87004 87822 . + 0 ID=Phyra80302;Parent=Phyra80302;rank=2 scaffold_48 . exon 87004 87822 . + . ID=Phyra80302.2;Parent=Phyra80302;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 87858 89217 . + 0 ID=Phyra80302;Parent=Phyra80302;rank=3 scaffold_48 . exon 87858 89217 . + . ID=Phyra80302.3;Parent=Phyra80302;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_48 . CDS 89291 89351 . + 0 ID=Phyra80302;Parent=Phyra80302;rank=4 scaffold_48 . CDS 89472 90581 . + 0 ID=Phyra80302;Parent=Phyra80302;rank=5 scaffold_48 . exon 78655 79066 . + . ID=Phyra95670.13;Parent=Phyra95670;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_48 . exon 79205 79336 . + . ID=Phyra95670.14;Parent=Phyra95670;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_48 . exon 79416 79576 . + . ID=Phyra95670.15;Parent=Phyra95670;constitutive=1;ensembl_phase=1;rank=15 scaffold_48 . biological_region 89587 89587 0.999 + . logic_name=eponine scaffold_48 . repeat_region 91302 91332 . ? . description=dust scaffold_48 . repeat_region 92187 92278 . - . description=Gypsy-1-LTR_PI scaffold_48 . biological_region 93839 93841 0.999 - . logic_name=eponine scaffold_48 . biological_region 95635 95638 0.999 + . logic_name=eponine scaffold_48 . biological_region 95659 95663 0.999 + . logic_name=eponine scaffold_48 . biological_region 96333 96334 0.999 + . logic_name=eponine scaffold_48 . repeat_region 96868 98853 . - . description=GypsyPi-1c_I-int scaffold_48 . exon 89291 89351 . + . ID=Phyra80302.4;Parent=Phyra80302;constitutive=1;ensembl_phase=2;rank=4 scaffold_48 . exon 89472 90581 . + . ID=Phyra80302.5;Parent=Phyra80302;constitutive=1;rank=5 scaffold_48 ensembl protein_coding_gene 90670 91230 . - . ID=Phyra80303;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000015;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 90670 91230 . - . ID=Phyra80303;Parent=Phyra80303;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 90670 91230 . - 0 ID=Phyra80303;Parent=Phyra80303;rank=1 scaffold_48 . exon 90670 91230 . - . ID=Phyra80303.1;Parent=Phyra80303;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 94722 95564 . + . ID=Phyra80304;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000016;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 94722 95564 . + . ID=Phyra80304;Parent=Phyra80304;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 94722 95564 . + 0 ID=Phyra80304;Parent=Phyra80304;rank=1 scaffold_48 . exon 94722 95564 . + . ID=Phyra80304.1;Parent=Phyra80304;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 96541 97744 . - . ID=Phyra80305;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000017;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 96541 97744 . - . ID=Phyra80305;Parent=Phyra80305;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 96541 96678 . - 0 ID=Phyra80305;Parent=Phyra80305;rank=3 scaffold_48 . exon 96541 96678 . - . ID=Phyra80305.3;Parent=Phyra80305;constitutive=1;rank=3 scaffold_48 . CDS 96719 97465 . - 0 ID=Phyra80305;Parent=Phyra80305;rank=2 scaffold_48 . exon 96719 97465 . - . ID=Phyra80305.2;Parent=Phyra80305;constitutive=1;rank=2 scaffold_48 . CDS 97565 97744 . - 0 ID=Phyra80305;Parent=Phyra80305;rank=1 scaffold_48 . exon 97565 97744 . - . ID=Phyra80305.1;Parent=Phyra80305;constitutive=1;rank=1 scaffold_48 . repeat_region 102411 102608 . - . description=Gypsy-1-I_PI-int scaffold_48 ensembl protein_coding_gene 106425 108351 . - . ID=Phyra80306;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000018;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 106425 108351 . - . ID=Phyra80306;Parent=Phyra80306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 106425 106531 . - 0 ID=Phyra80306;Parent=Phyra80306;rank=6 scaffold_48 . exon 106425 106531 . - . ID=Phyra80306.6;Parent=Phyra80306;constitutive=1;ensembl_phase=1;rank=6 scaffold_48 . CDS 106826 106991 . - 0 ID=Phyra80306;Parent=Phyra80306;rank=5 scaffold_48 . exon 106826 106991 . - . ID=Phyra80306.5;Parent=Phyra80306;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_48 . CDS 107073 107143 . - 0 ID=Phyra80306;Parent=Phyra80306;rank=4 scaffold_48 . exon 107073 107143 . - . ID=Phyra80306.4;Parent=Phyra80306;constitutive=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 107203 107213 . - 0 ID=Phyra80306;Parent=Phyra80306;rank=3 scaffold_48 . exon 107203 107213 . - . ID=Phyra80306.3;Parent=Phyra80306;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 107254 108229 . - 0 ID=Phyra80306;Parent=Phyra80306;rank=2 scaffold_48 . exon 107254 108229 . - . ID=Phyra80306.2;Parent=Phyra80306;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_48 . CDS 108330 108351 . - 0 ID=Phyra80306;Parent=Phyra80306;rank=1 scaffold_48 . biological_region 110131 110136 0.999 - . logic_name=eponine scaffold_48 . biological_region 110437 110445 0.999 - . logic_name=eponine scaffold_48 . biological_region 114992 114997 0.999 - . logic_name=eponine scaffold_48 . repeat_region 115136 115158 . ? . description=trf scaffold_48 ensembl protein_coding_gene 112680 113180 . + . ID=Phyra49630;biotype=protein_coding;external_name=gwEuk.48.125.1;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 112680 113180 . + . ID=Phyra49630;Parent=Phyra49630;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 112680 112718 . + 0 ID=Phyra49630;Parent=Phyra49630;rank=1 scaffold_48 . exon 112680 112718 . + . ID=Phyra49630.1;Parent=Phyra49630;constitutive=1;rank=1 scaffold_48 . CDS 112781 112885 . + 0 ID=Phyra49630;Parent=Phyra49630;rank=2 scaffold_48 . exon 112781 112885 . + . ID=Phyra49630.2;Parent=Phyra49630;constitutive=1;rank=2 scaffold_48 . CDS 112965 113180 . + 0 ID=Phyra49630;Parent=Phyra49630;rank=3 scaffold_48 . exon 112965 113180 . + . ID=Phyra49630.3;Parent=Phyra49630;constitutive=1;rank=3 scaffold_48 . exon 108330 108351 . - . ID=Phyra80306.1;Parent=Phyra80306;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 ensembl protein_coding_gene 108481 109011 . + . ID=Phyra80307;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000019;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 108481 109011 . + . ID=Phyra80307;Parent=Phyra80307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 108481 109011 . + 0 ID=Phyra80307;Parent=Phyra80307;rank=1 scaffold_48 . exon 108481 109011 . + . ID=Phyra80307.1;Parent=Phyra80307;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 113578 114545 . - . ID=Phyra80312;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000024;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 113578 114545 . - . ID=Phyra80312;Parent=Phyra80312;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 113578 114456 . - 0 ID=Phyra80312;Parent=Phyra80312;rank=2 scaffold_48 . exon 113578 114456 . - . ID=Phyra80312.2;Parent=Phyra80312;constitutive=1;rank=2 scaffold_48 . CDS 114519 114545 . - 0 ID=Phyra80312;Parent=Phyra80312;rank=1 scaffold_48 . exon 114519 114545 . - . ID=Phyra80312.1;Parent=Phyra80312;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 114811 116085 . + . ID=Phyra80313;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000025;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 114811 116085 . + . ID=Phyra80313;Parent=Phyra80313;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 114811 116085 . + 0 ID=Phyra80313;Parent=Phyra80313;rank=1 scaffold_48 . exon 114811 116085 . + . ID=Phyra80313.1;Parent=Phyra80313;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 116161 117563 . - . ID=Phyra80314;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000026;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 116161 117563 . - . ID=Phyra80314;Parent=Phyra80314;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 116161 117258 . - 0 ID=Phyra80314;Parent=Phyra80314;rank=2 scaffold_48 . exon 116161 117258 . - . ID=Phyra80314.2;Parent=Phyra80314;constitutive=1;rank=2 scaffold_48 . CDS 117354 117563 . - 0 ID=Phyra80314;Parent=Phyra80314;rank=1 scaffold_48 . exon 117354 117563 . - . ID=Phyra80314.1;Parent=Phyra80314;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 109150 110598 . - . ID=Phyra95672;biotype=protein_coding;external_name=C_scaffold_48000009;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 109150 110598 . - . ID=Phyra95672;Parent=Phyra95672;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 109150 110598 . - 0 ID=Phyra95672;Parent=Phyra95672;rank=1 scaffold_48 . exon 109150 110598 . - . ID=Phyra95672.1;Parent=Phyra95672;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 110713 111693 . + . ID=Phyra95673;biotype=protein_coding;external_name=C_scaffold_48000010;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 110713 111693 . + . ID=Phyra95673;Parent=Phyra95673;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 110713 110751 . + 0 ID=Phyra95673;Parent=Phyra95673;rank=1 scaffold_48 . exon 110713 110751 . + . ID=Phyra95673.1;Parent=Phyra95673;constitutive=1;rank=1 scaffold_48 . CDS 110824 110887 . + 0 ID=Phyra95673;Parent=Phyra95673;rank=2 scaffold_48 . exon 110824 110887 . + . ID=Phyra95673.2;Parent=Phyra95673;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_48 . CDS 110951 111075 . + 0 ID=Phyra95673;Parent=Phyra95673;rank=3 scaffold_48 . exon 110951 111075 . + . ID=Phyra95673.3;Parent=Phyra95673;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 111185 111273 . + 0 ID=Phyra95673;Parent=Phyra95673;rank=4 scaffold_48 . exon 111185 111273 . + . ID=Phyra95673.4;Parent=Phyra95673;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_48 . CDS 111387 111584 . + 0 ID=Phyra95673;Parent=Phyra95673;rank=5 scaffold_48 . exon 111387 111584 . + . ID=Phyra95673.5;Parent=Phyra95673;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_48 . CDS 111669 111693 . + 0 ID=Phyra95673;Parent=Phyra95673;rank=6 scaffold_48 . exon 111669 111693 . + . ID=Phyra95673.6;Parent=Phyra95673;constitutive=1;ensembl_phase=2;rank=6 scaffold_48 ensembl protein_coding_gene 111799 112405 . - . ID=Phyra95674;biotype=protein_coding;external_name=C_scaffold_48000011;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 111799 112405 . - . ID=Phyra95674;Parent=Phyra95674;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 111799 112022 . - 0 ID=Phyra95674;Parent=Phyra95674;rank=4 scaffold_48 . exon 111799 112022 . - . ID=Phyra95674.4;Parent=Phyra95674;constitutive=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 112082 112157 . - 0 ID=Phyra95674;Parent=Phyra95674;rank=3 scaffold_48 . exon 112082 112157 . - . ID=Phyra95674.3;Parent=Phyra95674;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_48 . CDS 112227 112268 . - 0 ID=Phyra95674;Parent=Phyra95674;rank=2 scaffold_48 . exon 112227 112268 . - . ID=Phyra95674.2;Parent=Phyra95674;constitutive=1;rank=2 scaffold_48 . CDS 112337 112405 . - 0 ID=Phyra95674;Parent=Phyra95674;rank=1 scaffold_48 . exon 112337 112405 . - . ID=Phyra95674.1;Parent=Phyra95674;constitutive=1;rank=1 scaffold_48 . repeat_region 118229 118241 . ? . description=dust scaffold_48 . repeat_region 126186 126200 . ? . description=dust scaffold_48 ensembl protein_coding_gene 118924 120612 . + . ID=Phyra80315;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000027;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 118924 120612 . + . ID=Phyra80315;Parent=Phyra80315;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 118924 120612 . + 0 ID=Phyra80315;Parent=Phyra80315;rank=1 scaffold_48 . exon 118924 120612 . + . ID=Phyra80315.1;Parent=Phyra80315;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 120857 121560 . - . ID=Phyra80316;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000028;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 120857 121560 . - . ID=Phyra80316;Parent=Phyra80316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 120857 121192 . - 0 ID=Phyra80316;Parent=Phyra80316;rank=2 scaffold_48 . exon 120857 121192 . - . ID=Phyra80316.2;Parent=Phyra80316;constitutive=1;rank=2 scaffold_48 . CDS 121270 121560 . - 0 ID=Phyra80316;Parent=Phyra80316;rank=1 scaffold_48 . exon 121270 121560 . - . ID=Phyra80316.1;Parent=Phyra80316;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 121750 122421 . + . ID=Phyra80317;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000029;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 121750 122421 . + . ID=Phyra80317;Parent=Phyra80317;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 121750 121815 . + 0 ID=Phyra80317;Parent=Phyra80317;rank=1 scaffold_48 . exon 121750 121815 . + . ID=Phyra80317.1;Parent=Phyra80317;constitutive=1;rank=1 scaffold_48 . CDS 121885 122421 . + 0 ID=Phyra80317;Parent=Phyra80317;rank=2 scaffold_48 . exon 121885 122421 . + . ID=Phyra80317.2;Parent=Phyra80317;constitutive=1;rank=2 scaffold_48 ensembl protein_coding_gene 122569 123907 . - . ID=Phyra80318;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000030;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 122569 123907 . - . ID=Phyra80318;Parent=Phyra80318;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 122569 122617 . - 0 ID=Phyra80318;Parent=Phyra80318;rank=2 scaffold_48 . exon 122569 122617 . - . ID=Phyra80318.2;Parent=Phyra80318;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 122637 123907 . - 0 ID=Phyra80318;Parent=Phyra80318;rank=1 scaffold_48 . exon 122637 123907 . - . ID=Phyra80318.1;Parent=Phyra80318;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 ensembl protein_coding_gene 124186 126810 . + . ID=Phyra80319;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000031;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 124186 126810 . + . ID=Phyra80319;Parent=Phyra80319;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 124186 126810 . + 0 ID=Phyra80319;Parent=Phyra80319;rank=1 scaffold_48 . exon 124186 126810 . + . ID=Phyra80319.1;Parent=Phyra80319;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 127165 128273 . - . ID=Phyra80320;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000032;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 127165 128273 . - . ID=Phyra80320;Parent=Phyra80320;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 127165 127169 . - 0 ID=Phyra80320;Parent=Phyra80320;rank=4 scaffold_48 . exon 127165 127169 . - . ID=Phyra80320.4;Parent=Phyra80320;constitutive=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 127214 127770 . - 0 ID=Phyra80320;Parent=Phyra80320;rank=3 scaffold_48 . exon 127214 127770 . - . ID=Phyra80320.3;Parent=Phyra80320;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 127844 128106 . - 0 ID=Phyra80320;Parent=Phyra80320;rank=2 scaffold_48 . CDS 128169 128273 . - 0 ID=Phyra80320;Parent=Phyra80320;rank=1 scaffold_48 . biological_region 129864 129868 0.999 + . logic_name=eponine scaffold_48 . biological_region 132926 132929 0.999 + . logic_name=eponine scaffold_48 . biological_region 135504 135512 0.999 + . logic_name=eponine scaffold_48 . biological_region 135709 135712 0.999 - . logic_name=eponine scaffold_48 . biological_region 136028 136032 0.999 + . logic_name=eponine scaffold_48 . biological_region 136047 136050 0.999 + . logic_name=eponine scaffold_48 . biological_region 136879 136882 0.999 - . logic_name=eponine scaffold_48 . biological_region 137048 137052 0.999 - . logic_name=eponine scaffold_48 . biological_region 137077 137081 0.999 - . logic_name=eponine scaffold_48 . exon 127844 128106 . - . ID=Phyra80320.2;Parent=Phyra80320;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_48 . exon 128169 128273 . - . ID=Phyra80320.1;Parent=Phyra80320;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 128436 129366 . + . ID=Phyra80321;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000033;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 128436 129366 . + . ID=Phyra80321;Parent=Phyra80321;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 128436 129027 . + 0 ID=Phyra80321;Parent=Phyra80321;rank=1 scaffold_48 . exon 128436 129027 . + . ID=Phyra80321.1;Parent=Phyra80321;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 129086 129232 . + 0 ID=Phyra80321;Parent=Phyra80321;rank=2 scaffold_48 . exon 129086 129232 . + . ID=Phyra80321.2;Parent=Phyra80321;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 129341 129366 . + 0 ID=Phyra80321;Parent=Phyra80321;rank=3 scaffold_48 . exon 129341 129366 . + . ID=Phyra80321.3;Parent=Phyra80321;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 ensembl protein_coding_gene 130066 130848 . - . ID=Phyra80322;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000034;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 130066 130848 . - . ID=Phyra80322;Parent=Phyra80322;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 130066 130848 . - 0 ID=Phyra80322;Parent=Phyra80322;rank=1 scaffold_48 . exon 130066 130848 . - . ID=Phyra80322.1;Parent=Phyra80322;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 132937 137216 . - . ID=Phyra80323;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000035;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 132937 137216 . - . ID=Phyra80323;Parent=Phyra80323;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 132937 133015 . - 0 ID=Phyra80323;Parent=Phyra80323;rank=7 scaffold_48 . exon 132937 133015 . - . ID=Phyra80323.7;Parent=Phyra80323;constitutive=1;ensembl_phase=2;rank=7 scaffold_48 . CDS 133089 133565 . - 0 ID=Phyra80323;Parent=Phyra80323;rank=6 scaffold_48 . exon 133089 133565 . - . ID=Phyra80323.6;Parent=Phyra80323;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_48 . CDS 133623 134038 . - 0 ID=Phyra80323;Parent=Phyra80323;rank=5 scaffold_48 . exon 133623 134038 . - . ID=Phyra80323.5;Parent=Phyra80323;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_48 . CDS 134157 134247 . - 0 ID=Phyra80323;Parent=Phyra80323;rank=4 scaffold_48 . exon 134157 134247 . - . ID=Phyra80323.4;Parent=Phyra80323;constitutive=1;ensembl_phase=2;rank=4 scaffold_48 . CDS 134334 135176 . - 0 ID=Phyra80323;Parent=Phyra80323;rank=3 scaffold_48 . exon 134334 135176 . - . ID=Phyra80323.3;Parent=Phyra80323;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_48 . CDS 135441 136232 . - 0 ID=Phyra80323;Parent=Phyra80323;rank=2 scaffold_48 . exon 135441 136232 . - . ID=Phyra80323.2;Parent=Phyra80323;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_48 . CDS 136567 137216 . - 0 ID=Phyra80323;Parent=Phyra80323;rank=1 scaffold_48 . exon 136567 137216 . - . ID=Phyra80323.1;Parent=Phyra80323;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . repeat_region 140911 140931 . ? . description=dust scaffold_48 ensembl protein_coding_gene 138615 138903 . - . ID=Phyra49641;biotype=protein_coding;external_name=gwEuk.48.136.1;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 138615 138903 . - . ID=Phyra49641;Parent=Phyra49641;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 138615 138818 . - 0 ID=Phyra49641;Parent=Phyra49641;rank=2 scaffold_48 . exon 138615 138818 . - . ID=Phyra49641.2;Parent=Phyra49641;constitutive=1;rank=2 scaffold_48 . CDS 138877 138903 . - 0 ID=Phyra49641;Parent=Phyra49641;rank=1 scaffold_48 . exon 138877 138903 . - . ID=Phyra49641.1;Parent=Phyra49641;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 144144 145398 . - . ID=Phyra49643;biotype=protein_coding;external_name=gwEuk.48.138.1;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 144144 145398 . - . ID=Phyra49643;Parent=Phyra49643;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 144144 145211 . - 0 ID=Phyra49643;Parent=Phyra49643;rank=2 scaffold_48 . exon 144144 145211 . - . ID=Phyra49643.2;Parent=Phyra49643;constitutive=1;rank=2 scaffold_48 . CDS 145282 145398 . - 0 ID=Phyra49643;Parent=Phyra49643;rank=1 scaffold_48 . exon 145282 145398 . - . ID=Phyra49643.1;Parent=Phyra49643;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 139056 140890 . + . ID=Phyra80324;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000036;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 139056 140890 . + . ID=Phyra80324;Parent=Phyra80324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 139056 140255 . + 0 ID=Phyra80324;Parent=Phyra80324;rank=1 scaffold_48 . exon 139056 140255 . + . ID=Phyra80324.1;Parent=Phyra80324;constitutive=1;rank=1 scaffold_48 . CDS 140321 140602 . + 0 ID=Phyra80324;Parent=Phyra80324;rank=2 scaffold_48 . exon 140321 140602 . + . ID=Phyra80324.2;Parent=Phyra80324;constitutive=1;rank=2 scaffold_48 . CDS 140666 140890 . + 0 ID=Phyra80324;Parent=Phyra80324;rank=3 scaffold_48 . exon 140666 140890 . + . ID=Phyra80324.3;Parent=Phyra80324;constitutive=1;rank=3 scaffold_48 ensembl protein_coding_gene 141001 143902 . + . ID=Phyra80325;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000037;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 141001 143902 . + . ID=Phyra80325;Parent=Phyra80325;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 141001 142403 . + 0 ID=Phyra80325;Parent=Phyra80325;rank=1 scaffold_48 . exon 141001 142403 . + . ID=Phyra80325.1;Parent=Phyra80325;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . CDS 142634 142709 . + 0 ID=Phyra80325;Parent=Phyra80325;rank=2 scaffold_48 . exon 142634 142709 . + . ID=Phyra80325.2;Parent=Phyra80325;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 142777 143243 . + 0 ID=Phyra80325;Parent=Phyra80325;rank=3 scaffold_48 . exon 142777 143243 . + . ID=Phyra80325.3;Parent=Phyra80325;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_48 . CDS 143351 143558 . + 0 ID=Phyra80325;Parent=Phyra80325;rank=4 scaffold_48 . exon 143351 143558 . + . ID=Phyra80325.4;Parent=Phyra80325;constitutive=1;ensembl_phase=2;rank=4 scaffold_48 . CDS 143630 143902 . + 0 ID=Phyra80325;Parent=Phyra80325;rank=5 scaffold_48 . exon 143630 143902 . + . ID=Phyra80325.5;Parent=Phyra80325;constitutive=1;rank=5 scaffold_48 ensembl protein_coding_gene 146143 147979 . + . ID=Phyra80328;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000040;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 146143 147979 . + . ID=Phyra80328;Parent=Phyra80328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 146143 146320 . + 0 ID=Phyra80328;Parent=Phyra80328;rank=1 scaffold_48 . exon 146143 146320 . + . ID=Phyra80328.1;Parent=Phyra80328;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 146388 147979 . + 0 ID=Phyra80328;Parent=Phyra80328;rank=2 scaffold_48 . exon 146388 147979 . + . ID=Phyra80328.2;Parent=Phyra80328;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . biological_region 150381 150383 0.999 + . logic_name=eponine scaffold_48 . biological_region 150460 150462 0.999 + . logic_name=eponine scaffold_48 . repeat_region 150630 150690 . ? . description=trf scaffold_48 . repeat_region 150638 150678 . ? . description=trf scaffold_48 . biological_region 151026 151031 0.999 - . logic_name=eponine scaffold_48 . biological_region 155140 155140 0.999 - . logic_name=eponine scaffold_48 . biological_region 155360 155362 0.999 + . logic_name=eponine scaffold_48 . biological_region 155392 155395 0.999 + . logic_name=eponine scaffold_48 . biological_region 155412 155417 0.999 - . logic_name=eponine scaffold_48 . biological_region 155447 155452 0.999 - . logic_name=eponine scaffold_48 . biological_region 155937 155938 0.999 - . logic_name=eponine scaffold_48 . repeat_region 156199 156230 . ? . description=trf scaffold_48 . biological_region 156752 156754 0.999 + . logic_name=eponine scaffold_48 ensembl protein_coding_gene 148127 149384 . + . ID=Phyra80329;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000041;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 148127 149384 . + . ID=Phyra80329;Parent=Phyra80329;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 148127 148357 . + 0 ID=Phyra80329;Parent=Phyra80329;rank=1 scaffold_48 . exon 148127 148357 . + . ID=Phyra80329.1;Parent=Phyra80329;constitutive=1;rank=1 scaffold_48 . CDS 148434 149384 . + 0 ID=Phyra80329;Parent=Phyra80329;rank=2 scaffold_48 . exon 148434 149384 . + . ID=Phyra80329.2;Parent=Phyra80329;constitutive=1;rank=2 scaffold_48 ensembl protein_coding_gene 156924 158816 . + . ID=Phyra80331;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000043;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 156924 158816 . + . ID=Phyra80331;Parent=Phyra80331;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 156924 158816 . + 0 ID=Phyra80331;Parent=Phyra80331;rank=1 scaffold_48 . exon 156924 158816 . + . ID=Phyra80331.1;Parent=Phyra80331;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 150448 155477 . + . ID=Phyra95680;biotype=protein_coding;external_name=C_scaffold_48000017;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 150448 155477 . + . ID=Phyra95680;Parent=Phyra95680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 150448 150936 . + 0 ID=Phyra95680;Parent=Phyra95680;rank=1 scaffold_48 . exon 150448 150936 . + . ID=Phyra95680.1;Parent=Phyra95680;constitutive=1;rank=1 scaffold_48 . CDS 151003 152323 . + 0 ID=Phyra95680;Parent=Phyra95680;rank=2 scaffold_48 . exon 151003 152323 . + . ID=Phyra95680.2;Parent=Phyra95680;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_48 . CDS 152696 152771 . + 0 ID=Phyra95680;Parent=Phyra95680;rank=3 scaffold_48 . exon 152696 152771 . + . ID=Phyra95680.3;Parent=Phyra95680;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_48 . CDS 152991 153248 . + 0 ID=Phyra95680;Parent=Phyra95680;rank=4 scaffold_48 . exon 152991 153248 . + . ID=Phyra95680.4;Parent=Phyra95680;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_48 . CDS 153291 153391 . + 0 ID=Phyra95680;Parent=Phyra95680;rank=5 scaffold_48 . exon 153291 153391 . + . ID=Phyra95680.5;Parent=Phyra95680;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_48 . CDS 153440 153586 . + 0 ID=Phyra95680;Parent=Phyra95680;rank=6 scaffold_48 . exon 153440 153586 . + . ID=Phyra95680.6;Parent=Phyra95680;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_48 . CDS 153620 154123 . + 0 ID=Phyra95680;Parent=Phyra95680;rank=7 scaffold_48 . exon 153620 154123 . + . ID=Phyra95680.7;Parent=Phyra95680;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_48 . CDS 154195 154321 . + 0 ID=Phyra95680;Parent=Phyra95680;rank=8 scaffold_48 . exon 154195 154321 . + . ID=Phyra95680.8;Parent=Phyra95680;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_48 . CDS 154388 154619 . + 0 ID=Phyra95680;Parent=Phyra95680;rank=9 scaffold_48 . exon 154388 154619 . + . ID=Phyra95680.9;Parent=Phyra95680;constitutive=1;ensembl_phase=2;rank=9 scaffold_48 . CDS 154689 154868 . + 0 ID=Phyra95680;Parent=Phyra95680;rank=10 scaffold_48 . exon 154689 154868 . + . ID=Phyra95680.10;Parent=Phyra95680;constitutive=1;rank=10 scaffold_48 . CDS 154958 155187 . + 0 ID=Phyra95680;Parent=Phyra95680;rank=11 scaffold_48 . exon 154958 155187 . + . ID=Phyra95680.11;Parent=Phyra95680;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_48 . CDS 155333 155477 . + 0 ID=Phyra95680;Parent=Phyra95680;rank=12 scaffold_48 . exon 155333 155477 . + . ID=Phyra95680.12;Parent=Phyra95680;constitutive=1;ensembl_phase=2;rank=12 scaffold_48 ensembl protein_coding_gene 159051 159689 . + . ID=Phyra80332;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000044;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 159051 159689 . + . ID=Phyra80332;Parent=Phyra80332;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 159051 159689 . + 0 ID=Phyra80332;Parent=Phyra80332;rank=1 scaffold_48 . exon 159051 159689 . + . ID=Phyra80332.1;Parent=Phyra80332;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 159780 162424 . - . ID=Phyra80333;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000045;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 159780 162424 . - . ID=Phyra80333;Parent=Phyra80333;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 159780 161438 . - 0 ID=Phyra80333;Parent=Phyra80333;rank=6 scaffold_48 . exon 159780 161438 . - . ID=Phyra80333.6;Parent=Phyra80333;constitutive=1;rank=6 scaffold_48 . CDS 161480 161606 . - 0 ID=Phyra80333;Parent=Phyra80333;rank=5 scaffold_48 . exon 161480 161606 . - . ID=Phyra80333.5;Parent=Phyra80333;constitutive=1;ensembl_phase=2;rank=5 scaffold_48 . CDS 161677 161995 . - 0 ID=Phyra80333;Parent=Phyra80333;rank=4 scaffold_48 . exon 161677 161995 . - . ID=Phyra80333.4;Parent=Phyra80333;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_48 . CDS 162058 162109 . - 0 ID=Phyra80333;Parent=Phyra80333;rank=3 scaffold_48 . exon 162058 162109 . - . ID=Phyra80333.3;Parent=Phyra80333;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_48 . CDS 162196 162354 . - 0 ID=Phyra80333;Parent=Phyra80333;rank=2 scaffold_48 . exon 162196 162354 . - . ID=Phyra80333.2;Parent=Phyra80333;constitutive=1;rank=2 scaffold_48 . CDS 162410 162424 . - 0 ID=Phyra80333;Parent=Phyra80333;rank=1 scaffold_48 . exon 162410 162424 . - . ID=Phyra80333.1;Parent=Phyra80333;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 162628 163957 . + . ID=Phyra80334;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000046;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 162628 163957 . + . ID=Phyra80334;Parent=Phyra80334;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 162628 163263 . + 0 ID=Phyra80334;Parent=Phyra80334;rank=1 scaffold_48 . exon 162628 163263 . + . ID=Phyra80334.1;Parent=Phyra80334;constitutive=1;rank=1 scaffold_48 . CDS 163323 163383 . + 0 ID=Phyra80334;Parent=Phyra80334;rank=2 scaffold_48 . exon 163323 163383 . + . ID=Phyra80334.2;Parent=Phyra80334;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_48 . CDS 163452 163867 . + 0 ID=Phyra80334;Parent=Phyra80334;rank=3 scaffold_48 . exon 163452 163867 . + . ID=Phyra80334.3;Parent=Phyra80334;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 163925 163957 . + 0 ID=Phyra80334;Parent=Phyra80334;rank=4 scaffold_48 . exon 163925 163957 . + . ID=Phyra80334.4;Parent=Phyra80334;constitutive=1;rank=4 scaffold_48 ensembl protein_coding_gene 165585 167321 . + . ID=Phyra80336;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000048;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 165585 167321 . + . ID=Phyra80336;Parent=Phyra80336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 165585 167321 . + 0 ID=Phyra80336;Parent=Phyra80336;rank=1 scaffold_48 . exon 165585 167321 . + . ID=Phyra80336.1;Parent=Phyra80336;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 164062 165229 . - . ID=Phyra95681;biotype=protein_coding;external_name=C_scaffold_48000018;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 164062 165229 . - . ID=Phyra95681;Parent=Phyra95681;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 164062 164139 . - 0 ID=Phyra95681;Parent=Phyra95681;rank=6 scaffold_48 . exon 164062 164139 . - . ID=Phyra95681.6;Parent=Phyra95681;constitutive=1;rank=6 scaffold_48 . CDS 164167 164275 . - 0 ID=Phyra95681;Parent=Phyra95681;rank=5 scaffold_48 . exon 164167 164275 . - . ID=Phyra95681.5;Parent=Phyra95681;constitutive=1;ensembl_phase=2;rank=5 scaffold_48 . CDS 164335 164634 . - 0 ID=Phyra95681;Parent=Phyra95681;rank=4 scaffold_48 . exon 164335 164634 . - . ID=Phyra95681.4;Parent=Phyra95681;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_48 . CDS 164659 164828 . - 0 ID=Phyra95681;Parent=Phyra95681;rank=3 scaffold_48 . exon 164659 164828 . - . ID=Phyra95681.3;Parent=Phyra95681;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_48 . CDS 164901 165094 . - 0 ID=Phyra95681;Parent=Phyra95681;rank=2 scaffold_48 . exon 164901 165094 . - . ID=Phyra95681.2;Parent=Phyra95681;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 165145 165229 . - 0 ID=Phyra95681;Parent=Phyra95681;rank=1 scaffold_48 . exon 165145 165229 . - . ID=Phyra95681.1;Parent=Phyra95681;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . repeat_region 171261 171286 . ? . description=trf scaffold_48 . repeat_region 171676 171684 . ? . description=dust scaffold_48 . repeat_region 172167 172217 . ? . description=trf scaffold_48 . repeat_region 172201 172224 . ? . description=trf scaffold_48 . repeat_region 173175 173188 . ? . description=dust scaffold_48 . repeat_region 173876 173883 . ? . description=dust scaffold_48 ensembl protein_coding_gene 170000 170782 . + . ID=Phyra80337;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000049;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 170000 170782 . + . ID=Phyra80337;Parent=Phyra80337;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 170000 170782 . + 0 ID=Phyra80337;Parent=Phyra80337;rank=1 scaffold_48 . exon 170000 170782 . + . ID=Phyra80337.1;Parent=Phyra80337;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 170910 171314 . - . ID=Phyra80338;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000050;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 170910 171314 . - . ID=Phyra80338;Parent=Phyra80338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 170910 171314 . - 0 ID=Phyra80338;Parent=Phyra80338;rank=1 scaffold_48 . exon 170910 171314 . - . ID=Phyra80338.1;Parent=Phyra80338;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 171799 172287 . - . ID=Phyra80339;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000051;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 171799 172287 . - . ID=Phyra80339;Parent=Phyra80339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 171799 172287 . - 0 ID=Phyra80339;Parent=Phyra80339;rank=1 scaffold_48 . exon 171799 172287 . - . ID=Phyra80339.1;Parent=Phyra80339;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 174094 175323 . - . ID=Phyra80340;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000052;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 174094 175323 . - . ID=Phyra80340;Parent=Phyra80340;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 174094 175323 . - 0 ID=Phyra80340;Parent=Phyra80340;rank=1 scaffold_48 . exon 174094 175323 . - . ID=Phyra80340.1;Parent=Phyra80340;constitutive=1;rank=1 scaffold_48 . biological_region 181483 181485 0.999 - . logic_name=eponine scaffold_48 . biological_region 182099 182103 0.999 + . logic_name=eponine scaffold_48 . biological_region 183603 183608 0.999 + . logic_name=eponine scaffold_48 . biological_region 183655 183659 0.999 + . logic_name=eponine scaffold_48 . biological_region 183683 183685 0.999 - . logic_name=eponine scaffold_48 . biological_region 183719 183722 0.999 - . logic_name=eponine scaffold_48 . biological_region 183749 183752 0.999 - . logic_name=eponine scaffold_48 . biological_region 184196 184196 0.999 - . logic_name=eponine scaffold_48 . repeat_region 184292 184365 . + . description=GypsyPi-1c_I-int scaffold_48 ensembl protein_coding_gene 177592 179133 . + . ID=Phyra80341;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000053;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 177592 179133 . + . ID=Phyra80341;Parent=Phyra80341;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 177592 179133 . + 0 ID=Phyra80341;Parent=Phyra80341;rank=1 scaffold_48 . exon 177592 179133 . + . ID=Phyra80341.1;Parent=Phyra80341;constitutive=1;rank=1 scaffold_48 . repeat_region 184376 191116 . ? . description=dust scaffold_48 . repeat_region 192597 193520 . ? . description=dust scaffold_48 . repeat_region 194891 194940 . ? . description=dust scaffold_48 . repeat_region 195819 195868 . ? . description=dust scaffold_48 ensembl protein_coding_gene 195154 196540 . - . ID=Phyra80342;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000054;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 195154 196540 . - . ID=Phyra80342;Parent=Phyra80342;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 195154 195515 . - 0 ID=Phyra80342;Parent=Phyra80342;rank=3 scaffold_48 . exon 195154 195515 . - . ID=Phyra80342.3;Parent=Phyra80342;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 195582 195779 . - 0 ID=Phyra80342;Parent=Phyra80342;rank=2 scaffold_48 . exon 195582 195779 . - . ID=Phyra80342.2;Parent=Phyra80342;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 196138 196540 . - 0 ID=Phyra80342;Parent=Phyra80342;rank=1 scaffold_48 . exon 196138 196540 . - . ID=Phyra80342.1;Parent=Phyra80342;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . repeat_region 196596 196964 . ? . description=trf scaffold_48 . repeat_region 201485 201523 . ? . description=trf scaffold_48 . biological_region 201736 201739 0.999 - . logic_name=eponine scaffold_48 . biological_region 202242 202244 0.999 - . logic_name=eponine scaffold_48 . biological_region 202645 202650 0.999 + . logic_name=eponine scaffold_48 ensembl protein_coding_gene 199859 204391 . + . ID=Phyra95683;biotype=protein_coding;external_name=C_scaffold_48000020;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 199859 204391 . + . ID=Phyra95683;Parent=Phyra95683;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 199859 200251 . + 0 ID=Phyra95683;Parent=Phyra95683;rank=1 scaffold_48 . exon 199859 200251 . + . ID=Phyra95683.1;Parent=Phyra95683;constitutive=1;rank=1 scaffold_48 . CDS 200273 201363 . + 0 ID=Phyra95683;Parent=Phyra95683;rank=2 scaffold_48 . exon 200273 201363 . + . ID=Phyra95683.2;Parent=Phyra95683;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_48 . CDS 201661 202018 . + 0 ID=Phyra95683;Parent=Phyra95683;rank=3 scaffold_48 . exon 201661 202018 . + . ID=Phyra95683.3;Parent=Phyra95683;constitutive=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 202058 202684 . + 0 ID=Phyra95683;Parent=Phyra95683;rank=4 scaffold_48 . exon 202058 202684 . + . ID=Phyra95683.4;Parent=Phyra95683;constitutive=1;rank=4 scaffold_48 . CDS 202706 202830 . + 0 ID=Phyra95683;Parent=Phyra95683;rank=5 scaffold_48 . exon 202706 202830 . + . ID=Phyra95683.5;Parent=Phyra95683;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_48 . CDS 202959 203307 . + 0 ID=Phyra95683;Parent=Phyra95683;rank=6 scaffold_48 . exon 202959 203307 . + . ID=Phyra95683.6;Parent=Phyra95683;constitutive=1;ensembl_phase=2;rank=6 scaffold_48 . CDS 203694 203872 . + 0 ID=Phyra95683;Parent=Phyra95683;rank=7 scaffold_48 . exon 203694 203872 . + . ID=Phyra95683.7;Parent=Phyra95683;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_48 . CDS 203950 204058 . + 0 ID=Phyra95683;Parent=Phyra95683;rank=8 scaffold_48 . exon 203950 204058 . + . ID=Phyra95683.8;Parent=Phyra95683;constitutive=1;ensembl_phase=2;rank=8 scaffold_48 . CDS 204134 204169 . + 0 ID=Phyra95683;Parent=Phyra95683;rank=9 scaffold_48 . exon 204134 204169 . + . ID=Phyra95683.9;Parent=Phyra95683;constitutive=1;rank=9 scaffold_48 . CDS 204242 204391 . + 0 ID=Phyra95683;Parent=Phyra95683;rank=10 scaffold_48 . exon 204242 204391 . + . ID=Phyra95683.10;Parent=Phyra95683;constitutive=1;rank=10 scaffold_48 ensembl protein_coding_gene 207451 208331 . - . ID=Phyra80347;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000059;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 207451 208331 . - . ID=Phyra80347;Parent=Phyra80347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 207451 207473 . - 0 ID=Phyra80347;Parent=Phyra80347;rank=3 scaffold_48 . exon 207451 207473 . - . ID=Phyra80347.3;Parent=Phyra80347;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 207553 207916 . - 0 ID=Phyra80347;Parent=Phyra80347;rank=2 scaffold_48 . exon 207553 207916 . - . ID=Phyra80347.2;Parent=Phyra80347;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_48 . CDS 207987 208331 . - 0 ID=Phyra80347;Parent=Phyra80347;rank=1 scaffold_48 . exon 207987 208331 . - . ID=Phyra80347.1;Parent=Phyra80347;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 208480 208878 . + . ID=Phyra80348;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000060;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 208480 208878 . + . ID=Phyra80348;Parent=Phyra80348;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 208480 208878 . + 0 ID=Phyra80348;Parent=Phyra80348;rank=1 scaffold_48 . exon 208480 208878 . + . ID=Phyra80348.1;Parent=Phyra80348;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 211695 215655 . + . ID=Phyra80350;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000062;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 211695 215655 . + . ID=Phyra80350;Parent=Phyra80350;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 211695 213625 . + 0 ID=Phyra80350;Parent=Phyra80350;rank=1 scaffold_48 . exon 211695 213625 . + . ID=Phyra80350.1;Parent=Phyra80350;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . CDS 214093 214116 . + 0 ID=Phyra80350;Parent=Phyra80350;rank=2 scaffold_48 . exon 214093 214116 . + . ID=Phyra80350.2;Parent=Phyra80350;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_48 . CDS 214208 214247 . + 0 ID=Phyra80350;Parent=Phyra80350;rank=3 scaffold_48 . exon 214208 214247 . + . ID=Phyra80350.3;Parent=Phyra80350;constitutive=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 214449 214523 . + 0 ID=Phyra80350;Parent=Phyra80350;rank=4 scaffold_48 . exon 214449 214523 . + . ID=Phyra80350.4;Parent=Phyra80350;constitutive=1;rank=4 scaffold_48 . CDS 214585 215655 . + 0 ID=Phyra80350;Parent=Phyra80350;rank=5 scaffold_48 . exon 214585 215655 . + . ID=Phyra80350.5;Parent=Phyra80350;constitutive=1;rank=5 scaffold_48 ensembl protein_coding_gene 209313 211294 . + . ID=Phyra95685;biotype=protein_coding;external_name=C_scaffold_48000022;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 209313 211294 . + . ID=Phyra95685;Parent=Phyra95685;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 209313 209490 . + 0 ID=Phyra95685;Parent=Phyra95685;rank=1 scaffold_48 . exon 209313 209490 . + . ID=Phyra95685.1;Parent=Phyra95685;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 209530 209715 . + 0 ID=Phyra95685;Parent=Phyra95685;rank=2 scaffold_48 . exon 209530 209715 . + . ID=Phyra95685.2;Parent=Phyra95685;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 210073 210726 . + 0 ID=Phyra95685;Parent=Phyra95685;rank=3 scaffold_48 . exon 210073 210726 . + . ID=Phyra95685.3;Parent=Phyra95685;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 210924 211049 . + 0 ID=Phyra95685;Parent=Phyra95685;rank=4 scaffold_48 . exon 210924 211049 . + . ID=Phyra95685.4;Parent=Phyra95685;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 211128 211294 . + 0 ID=Phyra95685;Parent=Phyra95685;rank=5 scaffold_48 . exon 211128 211294 . + . ID=Phyra95685.5;Parent=Phyra95685;constitutive=1;ensembl_phase=1;rank=5 scaffold_48 . repeat_region 218798 218806 . ? . description=dust scaffold_48 . repeat_region 221306 221336 . ? . description=trf scaffold_48 . biological_region 222279 222281 0.999 - . logic_name=eponine scaffold_48 . biological_region 223061 223065 0.999 - . logic_name=eponine scaffold_48 . biological_region 223150 223155 0.999 - . logic_name=eponine scaffold_48 . biological_region 223194 223198 0.999 + . logic_name=eponine scaffold_48 . biological_region 223235 223235 0.999 + . logic_name=eponine scaffold_48 . biological_region 223301 223308 0.999 + . logic_name=eponine scaffold_48 . biological_region 223324 223330 0.999 - . logic_name=eponine scaffold_48 . repeat_region 223820 223827 . ? . description=dust scaffold_48 . repeat_region 225453 225462 . ? . description=dust scaffold_48 ensembl protein_coding_gene 216773 217735 . - . ID=Phyra80351;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000063;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 216773 217735 . - . ID=Phyra80351;Parent=Phyra80351;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 216773 217735 . - 0 ID=Phyra80351;Parent=Phyra80351;rank=1 scaffold_48 . exon 216773 217735 . - . ID=Phyra80351.1;Parent=Phyra80351;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 218927 219778 . + . ID=Phyra80352;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000064;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 218927 219778 . + . ID=Phyra80352;Parent=Phyra80352;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 218927 219778 . + 0 ID=Phyra80352;Parent=Phyra80352;rank=1 scaffold_48 . exon 218927 219778 . + . ID=Phyra80352.1;Parent=Phyra80352;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 219849 221175 . - . ID=Phyra80353;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000065;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 219849 221175 . - . ID=Phyra80353;Parent=Phyra80353;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 219849 220895 . - 0 ID=Phyra80353;Parent=Phyra80353;rank=3 scaffold_48 . exon 219849 220895 . - . ID=Phyra80353.3;Parent=Phyra80353;constitutive=1;rank=3 scaffold_48 . CDS 220958 221020 . - 0 ID=Phyra80353;Parent=Phyra80353;rank=2 scaffold_48 . exon 220958 221020 . - . ID=Phyra80353.2;Parent=Phyra80353;constitutive=1;rank=2 scaffold_48 . CDS 221122 221175 . - 0 ID=Phyra80353;Parent=Phyra80353;rank=1 scaffold_48 . exon 221122 221175 . - . ID=Phyra80353.1;Parent=Phyra80353;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 221904 223418 . - . ID=Phyra80354;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000066;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 221904 223418 . - . ID=Phyra80354;Parent=Phyra80354;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 221904 222674 . - 0 ID=Phyra80354;Parent=Phyra80354;rank=2 scaffold_48 . exon 221904 222674 . - . ID=Phyra80354.2;Parent=Phyra80354;constitutive=1;rank=2 scaffold_48 . CDS 222756 223418 . - 0 ID=Phyra80354;Parent=Phyra80354;rank=1 scaffold_48 . exon 222756 223418 . - . ID=Phyra80354.1;Parent=Phyra80354;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 223874 226510 . - . ID=Phyra80355;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000067;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 223874 226510 . - . ID=Phyra80355;Parent=Phyra80355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 223874 224236 . - 0 ID=Phyra80355;Parent=Phyra80355;rank=8 scaffold_48 . exon 223874 224236 . - . ID=Phyra80355.8;Parent=Phyra80355;constitutive=1;rank=8 scaffold_48 . CDS 224501 224596 . - 0 ID=Phyra80355;Parent=Phyra80355;rank=7 scaffold_48 . exon 224501 224596 . - . ID=Phyra80355.7;Parent=Phyra80355;constitutive=1;rank=7 scaffold_48 . CDS 224726 225394 . - 0 ID=Phyra80355;Parent=Phyra80355;rank=6 scaffold_48 . exon 224726 225394 . - . ID=Phyra80355.6;Parent=Phyra80355;constitutive=1;rank=6 scaffold_48 . CDS 225480 225551 . - 0 ID=Phyra80355;Parent=Phyra80355;rank=5 scaffold_48 . exon 225480 225551 . - . ID=Phyra80355.5;Parent=Phyra80355;constitutive=1;rank=5 scaffold_48 . CDS 225677 225856 . - 0 ID=Phyra80355;Parent=Phyra80355;rank=4 scaffold_48 . exon 225677 225856 . - . ID=Phyra80355.4;Parent=Phyra80355;constitutive=1;rank=4 scaffold_48 . CDS 225933 226204 . - 0 ID=Phyra80355;Parent=Phyra80355;rank=3 scaffold_48 . CDS 226266 226386 . - 0 ID=Phyra80355;Parent=Phyra80355;rank=2 scaffold_48 . CDS 226457 226510 . - 0 ID=Phyra80355;Parent=Phyra80355;rank=1 scaffold_48 . exon 225933 226204 . - . ID=Phyra80355.3;Parent=Phyra80355;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 . exon 226266 226386 . - . ID=Phyra80355.2;Parent=Phyra80355;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_48 . exon 226457 226510 . - . ID=Phyra80355.1;Parent=Phyra80355;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 227296 228557 . + . ID=Phyra80356;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000068;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 227296 228557 . + . ID=Phyra80356;Parent=Phyra80356;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 227296 227369 . + 0 ID=Phyra80356;Parent=Phyra80356;rank=1 scaffold_48 . exon 227296 227369 . + . ID=Phyra80356.1;Parent=Phyra80356;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . CDS 227446 227578 . + 0 ID=Phyra80356;Parent=Phyra80356;rank=2 scaffold_48 . exon 227446 227578 . + . ID=Phyra80356.2;Parent=Phyra80356;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 227650 227744 . + 0 ID=Phyra80356;Parent=Phyra80356;rank=3 scaffold_48 . exon 227650 227744 . + . ID=Phyra80356.3;Parent=Phyra80356;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_48 . CDS 227801 227885 . + 0 ID=Phyra80356;Parent=Phyra80356;rank=4 scaffold_48 . exon 227801 227885 . + . ID=Phyra80356.4;Parent=Phyra80356;constitutive=1;ensembl_phase=2;rank=4 scaffold_48 . CDS 227979 228557 . + 0 ID=Phyra80356;Parent=Phyra80356;rank=5 scaffold_48 . exon 227979 228557 . + . ID=Phyra80356.5;Parent=Phyra80356;constitutive=1;rank=5 scaffold_48 ensembl protein_coding_gene 228961 229376 . + . ID=Phyra80357;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000069;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 228961 229376 . + . ID=Phyra80357;Parent=Phyra80357;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 228961 229243 . + 0 ID=Phyra80357;Parent=Phyra80357;rank=1 scaffold_48 . exon 228961 229243 . + . ID=Phyra80357.1;Parent=Phyra80357;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 229276 229376 . + 0 ID=Phyra80357;Parent=Phyra80357;rank=2 scaffold_48 . exon 229276 229376 . + . ID=Phyra80357.2;Parent=Phyra80357;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 ensembl protein_coding_gene 229593 230510 . - . ID=Phyra80358;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000070;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 229593 230510 . - . ID=Phyra80358;Parent=Phyra80358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 229593 229711 . - 0 ID=Phyra80358;Parent=Phyra80358;rank=3 scaffold_48 . exon 229593 229711 . - . ID=Phyra80358.3;Parent=Phyra80358;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 229971 230219 . - 0 ID=Phyra80358;Parent=Phyra80358;rank=2 scaffold_48 . exon 229971 230219 . - . ID=Phyra80358.2;Parent=Phyra80358;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 230294 230510 . - 0 ID=Phyra80358;Parent=Phyra80358;rank=1 scaffold_48 . exon 230294 230510 . - . ID=Phyra80358.1;Parent=Phyra80358;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 ensembl protein_coding_gene 230746 232296 . - . ID=Phyra80359;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000071;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 230746 232296 . - . ID=Phyra80359;Parent=Phyra80359;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 230746 232296 . - 0 ID=Phyra80359;Parent=Phyra80359;rank=1 scaffold_48 . exon 230746 232296 . - . ID=Phyra80359.1;Parent=Phyra80359;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 233709 235256 . - . ID=Phyra80360;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000072;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 233709 235256 . - . ID=Phyra80360;Parent=Phyra80360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 233709 235256 . - 0 ID=Phyra80360;Parent=Phyra80360;rank=1 scaffold_48 . exon 233709 235256 . - . ID=Phyra80360.1;Parent=Phyra80360;constitutive=1;rank=1 scaffold_48 . biological_region 235847 235849 0.999 - . logic_name=eponine scaffold_48 . repeat_region 236695 236708 . ? . description=dust scaffold_48 . biological_region 236729 236734 0.999 + . logic_name=eponine scaffold_48 . repeat_region 237093 237638 . ? . description=trf scaffold_48 . repeat_region 237093 237638 . ? . description=trf scaffold_48 . repeat_region 237094 237638 . ? . description=trf scaffold_48 . repeat_region 238174 238181 . ? . description=dust scaffold_48 . biological_region 239363 239367 0.999 + . logic_name=eponine scaffold_48 . biological_region 239567 239572 0.999 + . logic_name=eponine scaffold_48 . biological_region 243685 243686 0.999 + . logic_name=eponine scaffold_48 ensembl protein_coding_gene 237039 239507 . - . ID=Phyra80361;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000073;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 237039 239507 . - . ID=Phyra80361;Parent=Phyra80361;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 237039 239507 . - 0 ID=Phyra80361;Parent=Phyra80361;rank=1 scaffold_48 . exon 237039 239507 . - . ID=Phyra80361.1;Parent=Phyra80361;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 239822 247529 . + . ID=Phyra95689;biotype=protein_coding;external_name=C_scaffold_48000026;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 239822 247529 . + . ID=Phyra95689;Parent=Phyra95689;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 239822 240710 . + 0 ID=Phyra95689;Parent=Phyra95689;rank=1 scaffold_48 . exon 239822 240710 . + . ID=Phyra95689.1;Parent=Phyra95689;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 240741 240931 . + 0 ID=Phyra95689;Parent=Phyra95689;rank=2 scaffold_48 . exon 240741 240931 . + . ID=Phyra95689.2;Parent=Phyra95689;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 241127 241298 . + 0 ID=Phyra95689;Parent=Phyra95689;rank=3 scaffold_48 . exon 241127 241298 . + . ID=Phyra95689.3;Parent=Phyra95689;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_48 . CDS 241515 242933 . + 0 ID=Phyra95689;Parent=Phyra95689;rank=4 scaffold_48 . exon 241515 242933 . + . ID=Phyra95689.4;Parent=Phyra95689;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 243165 243319 . + 0 ID=Phyra95689;Parent=Phyra95689;rank=5 scaffold_48 . exon 243165 243319 . + . ID=Phyra95689.5;Parent=Phyra95689;constitutive=1;ensembl_phase=1;rank=5 scaffold_48 . CDS 243587 243715 . + 0 ID=Phyra95689;Parent=Phyra95689;rank=6 scaffold_48 . exon 243587 243715 . + . ID=Phyra95689.6;Parent=Phyra95689;constitutive=1;rank=6 scaffold_48 . CDS 244106 244250 . + 0 ID=Phyra95689;Parent=Phyra95689;rank=7 scaffold_48 . exon 244106 244250 . + . ID=Phyra95689.7;Parent=Phyra95689;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_48 . CDS 244452 244531 . + 0 ID=Phyra95689;Parent=Phyra95689;rank=8 scaffold_48 . exon 244452 244531 . + . ID=Phyra95689.8;Parent=Phyra95689;constitutive=1;ensembl_phase=1;rank=8 scaffold_48 . CDS 244697 245103 . + 0 ID=Phyra95689;Parent=Phyra95689;rank=9 scaffold_48 . exon 244697 245103 . + . ID=Phyra95689.9;Parent=Phyra95689;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_48 . CDS 245407 245581 . + 0 ID=Phyra95689;Parent=Phyra95689;rank=10 scaffold_48 . CDS 245741 246094 . + 0 ID=Phyra95689;Parent=Phyra95689;rank=11 scaffold_48 . CDS 246404 246598 . + 0 ID=Phyra95689;Parent=Phyra95689;rank=12 scaffold_48 . CDS 247277 247529 . + 0 ID=Phyra95689;Parent=Phyra95689;rank=13 scaffold_48 ensembl protein_coding_gene 248291 259337 . + . ID=Phyra80363;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000075;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 248291 259337 . + . ID=Phyra80363;Parent=Phyra80363;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 248291 250164 . + 0 ID=Phyra80363;Parent=Phyra80363;rank=1 scaffold_48 . exon 248291 250164 . + . ID=Phyra80363.1;Parent=Phyra80363;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . CDS 250194 254141 . + 0 ID=Phyra80363;Parent=Phyra80363;rank=2 scaffold_48 . exon 250194 254141 . + . ID=Phyra80363.2;Parent=Phyra80363;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_48 . CDS 254337 255813 . + 0 ID=Phyra80363;Parent=Phyra80363;rank=3 scaffold_48 . exon 254337 255813 . + . ID=Phyra80363.3;Parent=Phyra80363;constitutive=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 256035 256471 . + 0 ID=Phyra80363;Parent=Phyra80363;rank=4 scaffold_48 . CDS 256549 256933 . + 0 ID=Phyra80363;Parent=Phyra80363;rank=5 scaffold_48 . CDS 257109 259337 . + 0 ID=Phyra80363;Parent=Phyra80363;rank=6 scaffold_48 . exon 245407 245581 . + . ID=Phyra95689.10;Parent=Phyra95689;constitutive=1;ensembl_phase=2;rank=10 scaffold_48 . exon 245741 246094 . + . ID=Phyra95689.11;Parent=Phyra95689;constitutive=1;rank=11 scaffold_48 . exon 246404 246598 . + . ID=Phyra95689.12;Parent=Phyra95689;constitutive=1;rank=12 scaffold_48 . exon 247277 247529 . + . ID=Phyra95689.13;Parent=Phyra95689;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_48 . biological_region 255777 255782 0.999 - . logic_name=eponine scaffold_48 . biological_region 261892 261894 0.999 + . logic_name=eponine scaffold_48 . biological_region 262222 262229 0.999 + . logic_name=eponine scaffold_48 . biological_region 262247 262249 0.999 - . logic_name=eponine scaffold_48 . biological_region 262275 262275 0.999 + . logic_name=eponine scaffold_48 . biological_region 262871 262874 0.999 - . logic_name=eponine scaffold_48 . biological_region 262898 262900 0.999 - . logic_name=eponine scaffold_48 . biological_region 264089 264093 0.999 + . logic_name=eponine scaffold_48 . biological_region 264129 264133 0.999 - . logic_name=eponine scaffold_48 . biological_region 264191 264195 0.999 - . logic_name=eponine scaffold_48 . biological_region 264211 264216 0.999 - . logic_name=eponine scaffold_48 . biological_region 264227 264230 0.999 + . logic_name=eponine scaffold_48 . biological_region 264270 264276 0.999 - . logic_name=eponine scaffold_48 . biological_region 264285 264290 0.999 - . logic_name=eponine scaffold_48 . exon 256035 256471 . + . ID=Phyra80363.4;Parent=Phyra80363;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_48 . exon 256549 256933 . + . ID=Phyra80363.5;Parent=Phyra80363;constitutive=1;ensembl_phase=2;rank=5 scaffold_48 . exon 257109 259337 . + . ID=Phyra80363.6;Parent=Phyra80363;constitutive=1;rank=6 scaffold_48 ensembl protein_coding_gene 260123 262447 . - . ID=Phyra80364;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000076;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 260123 262447 . - . ID=Phyra80364;Parent=Phyra80364;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 260123 261418 . - 0 ID=Phyra80364;Parent=Phyra80364;rank=3 scaffold_48 . exon 260123 261418 . - . ID=Phyra80364.3;Parent=Phyra80364;constitutive=1;rank=3 scaffold_48 . CDS 261847 262375 . - 0 ID=Phyra80364;Parent=Phyra80364;rank=2 scaffold_48 . exon 261847 262375 . - . ID=Phyra80364.2;Parent=Phyra80364;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 262437 262447 . - 0 ID=Phyra80364;Parent=Phyra80364;rank=1 scaffold_48 . exon 262437 262447 . - . ID=Phyra80364.1;Parent=Phyra80364;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 ensembl protein_coding_gene 262695 266255 . + . ID=Phyra95694;biotype=protein_coding;external_name=C_scaffold_48000031;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 262695 266255 . + . ID=Phyra95694;Parent=Phyra95694;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 262695 263125 . + 0 ID=Phyra95694;Parent=Phyra95694;rank=1 scaffold_48 . exon 262695 263125 . + . ID=Phyra95694.1;Parent=Phyra95694;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . CDS 263580 263645 . + 0 ID=Phyra95694;Parent=Phyra95694;rank=2 scaffold_48 . exon 263580 263645 . + . ID=Phyra95694.2;Parent=Phyra95694;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_48 . CDS 263708 263771 . + 0 ID=Phyra95694;Parent=Phyra95694;rank=3 scaffold_48 . exon 263708 263771 . + . ID=Phyra95694.3;Parent=Phyra95694;constitutive=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 263835 263926 . + 0 ID=Phyra95694;Parent=Phyra95694;rank=4 scaffold_48 . exon 263835 263926 . + . ID=Phyra95694.4;Parent=Phyra95694;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_48 . CDS 264036 264281 . + 0 ID=Phyra95694;Parent=Phyra95694;rank=5 scaffold_48 . exon 264036 264281 . + . ID=Phyra95694.5;Parent=Phyra95694;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_48 . CDS 264408 264471 . + 0 ID=Phyra95694;Parent=Phyra95694;rank=6 scaffold_48 . exon 264408 264471 . + . ID=Phyra95694.6;Parent=Phyra95694;constitutive=1;ensembl_phase=2;rank=6 scaffold_48 . CDS 264746 265076 . + 0 ID=Phyra95694;Parent=Phyra95694;rank=7 scaffold_48 . exon 264746 265076 . + . ID=Phyra95694.7;Parent=Phyra95694;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_48 . CDS 265167 265236 . + 0 ID=Phyra95694;Parent=Phyra95694;rank=8 scaffold_48 . CDS 265436 265511 . + 0 ID=Phyra95694;Parent=Phyra95694;rank=9 scaffold_48 . CDS 265588 265640 . + 0 ID=Phyra95694;Parent=Phyra95694;rank=10 scaffold_48 . CDS 265710 265767 . + 0 ID=Phyra95694;Parent=Phyra95694;rank=11 scaffold_48 . CDS 265828 265917 . + 0 ID=Phyra95694;Parent=Phyra95694;rank=12 scaffold_48 . CDS 265990 266079 . + 0 ID=Phyra95694;Parent=Phyra95694;rank=13 scaffold_48 . CDS 266148 266255 . + 0 ID=Phyra95694;Parent=Phyra95694;rank=14 scaffold_48 ensembl protein_coding_gene 266824 269260 . + . ID=Phyra80367;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000079;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 266824 269260 . + . ID=Phyra80367;Parent=Phyra80367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 266824 266979 . + 0 ID=Phyra80367;Parent=Phyra80367;rank=1 scaffold_48 . exon 266824 266979 . + . ID=Phyra80367.1;Parent=Phyra80367;constitutive=1;rank=1 scaffold_48 . CDS 267048 267491 . + 0 ID=Phyra80367;Parent=Phyra80367;rank=2 scaffold_48 . exon 267048 267491 . + . ID=Phyra80367.2;Parent=Phyra80367;constitutive=1;rank=2 scaffold_48 . CDS 267559 268167 . + 0 ID=Phyra80367;Parent=Phyra80367;rank=3 scaffold_48 . exon 267559 268167 . + . ID=Phyra80367.3;Parent=Phyra80367;constitutive=1;rank=3 scaffold_48 . CDS 268406 269260 . + 0 ID=Phyra80367;Parent=Phyra80367;rank=4 scaffold_48 . exon 268406 269260 . + . ID=Phyra80367.4;Parent=Phyra80367;constitutive=1;rank=4 scaffold_48 ensembl protein_coding_gene 269496 271420 . + . ID=Phyra80368;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000080;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 269496 271420 . + . ID=Phyra80368;Parent=Phyra80368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 269496 269594 . + 0 ID=Phyra80368;Parent=Phyra80368;rank=1 scaffold_48 . exon 269496 269594 . + . ID=Phyra80368.1;Parent=Phyra80368;constitutive=1;rank=1 scaffold_48 . CDS 269672 269772 . + 0 ID=Phyra80368;Parent=Phyra80368;rank=2 scaffold_48 . exon 269672 269772 . + . ID=Phyra80368.2;Parent=Phyra80368;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_48 . CDS 269837 269993 . + 0 ID=Phyra80368;Parent=Phyra80368;rank=3 scaffold_48 . exon 269837 269993 . + . ID=Phyra80368.3;Parent=Phyra80368;constitutive=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 270071 270153 . + 0 ID=Phyra80368;Parent=Phyra80368;rank=4 scaffold_48 . exon 270071 270153 . + . ID=Phyra80368.4;Parent=Phyra80368;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_48 . CDS 270214 271202 . + 0 ID=Phyra80368;Parent=Phyra80368;rank=5 scaffold_48 . exon 270214 271202 . + . ID=Phyra80368.5;Parent=Phyra80368;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_48 . CDS 271287 271420 . + 0 ID=Phyra80368;Parent=Phyra80368;rank=6 scaffold_48 . exon 271287 271420 . + . ID=Phyra80368.6;Parent=Phyra80368;constitutive=1;ensembl_phase=1;rank=6 scaffold_48 ensembl protein_coding_gene 271591 273114 . - . ID=Phyra80369;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000081;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 271591 273114 . - . ID=Phyra80369;Parent=Phyra80369;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 271591 273114 . - 0 ID=Phyra80369;Parent=Phyra80369;rank=1 scaffold_48 . exon 271591 273114 . - . ID=Phyra80369.1;Parent=Phyra80369;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 273651 274179 . + . ID=Phyra80370;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000082;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 273651 274179 . + . ID=Phyra80370;Parent=Phyra80370;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 273651 273734 . + 0 ID=Phyra80370;Parent=Phyra80370;rank=1 scaffold_48 . exon 273651 273734 . + . ID=Phyra80370.1;Parent=Phyra80370;constitutive=1;rank=1 scaffold_48 . CDS 273832 274179 . + 0 ID=Phyra80370;Parent=Phyra80370;rank=2 scaffold_48 . exon 273832 274179 . + . ID=Phyra80370.2;Parent=Phyra80370;constitutive=1;rank=2 scaffold_48 . exon 265167 265236 . + . ID=Phyra95694.8;Parent=Phyra95694;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_48 . exon 265436 265511 . + . ID=Phyra95694.9;Parent=Phyra95694;constitutive=1;ensembl_phase=2;rank=9 scaffold_48 . exon 265588 265640 . + . ID=Phyra95694.10;Parent=Phyra95694;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_48 . exon 265710 265767 . + . ID=Phyra95694.11;Parent=Phyra95694;constitutive=1;ensembl_phase=2;rank=11 scaffold_48 . exon 265828 265917 . + . ID=Phyra95694.12;Parent=Phyra95694;constitutive=1;rank=12 scaffold_48 . exon 265990 266079 . + . ID=Phyra95694.13;Parent=Phyra95694;constitutive=1;rank=13 scaffold_48 . exon 266148 266255 . + . ID=Phyra95694.14;Parent=Phyra95694;constitutive=1;rank=14 scaffold_48 . biological_region 282202 282206 0.999 - . logic_name=eponine scaffold_48 . biological_region 282232 282239 0.999 + . logic_name=eponine scaffold_48 ensembl protein_coding_gene 282420 283521 . + . ID=Phyra80373;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000085;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 282420 283521 . + . ID=Phyra80373;Parent=Phyra80373;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 282420 282999 . + 0 ID=Phyra80373;Parent=Phyra80373;rank=1 scaffold_48 . exon 282420 282999 . + . ID=Phyra80373.1;Parent=Phyra80373;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 283065 283391 . + 0 ID=Phyra80373;Parent=Phyra80373;rank=2 scaffold_48 . exon 283065 283391 . + . ID=Phyra80373.2;Parent=Phyra80373;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 283469 283521 . + 0 ID=Phyra80373;Parent=Phyra80373;rank=3 scaffold_48 . exon 283469 283521 . + . ID=Phyra80373.3;Parent=Phyra80373;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 ensembl protein_coding_gene 283723 285228 . - . ID=Phyra80374;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000086;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 283723 285228 . - . ID=Phyra80374;Parent=Phyra80374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 283723 285228 . - 0 ID=Phyra80374;Parent=Phyra80374;rank=1 scaffold_48 . exon 283723 285228 . - . ID=Phyra80374.1;Parent=Phyra80374;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 278614 281727 . - . ID=Phyra95696;biotype=protein_coding;external_name=C_scaffold_48000033;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 278614 281727 . - . ID=Phyra95696;Parent=Phyra95696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 278614 278760 . - 0 ID=Phyra95696;Parent=Phyra95696;rank=6 scaffold_48 . exon 278614 278760 . - . ID=Phyra95696.6;Parent=Phyra95696;constitutive=1;rank=6 scaffold_48 . CDS 278788 279359 . - 0 ID=Phyra95696;Parent=Phyra95696;rank=5 scaffold_48 . exon 278788 279359 . - . ID=Phyra95696.5;Parent=Phyra95696;constitutive=1;ensembl_phase=1;rank=5 scaffold_48 . CDS 279447 279855 . - 0 ID=Phyra95696;Parent=Phyra95696;rank=4 scaffold_48 . exon 279447 279855 . - . ID=Phyra95696.4;Parent=Phyra95696;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_48 . CDS 280244 280695 . - 0 ID=Phyra95696;Parent=Phyra95696;rank=3 scaffold_48 . exon 280244 280695 . - . ID=Phyra95696.3;Parent=Phyra95696;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 280927 281039 . - 0 ID=Phyra95696;Parent=Phyra95696;rank=2 scaffold_48 . exon 280927 281039 . - . ID=Phyra95696.2;Parent=Phyra95696;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 281354 281727 . - 0 ID=Phyra95696;Parent=Phyra95696;rank=1 scaffold_48 . exon 281354 281727 . - . ID=Phyra95696.1;Parent=Phyra95696;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . repeat_region 285525 285532 . ? . description=dust scaffold_48 . repeat_region 285994 286023 . ? . description=trf scaffold_48 . repeat_region 290755 290901 . ? . description=trf scaffold_48 . repeat_region 290965 291120 . ? . description=trf scaffold_48 . repeat_region 291203 291305 . ? . description=dust scaffold_48 . repeat_region 291600 291609 . ? . description=dust scaffold_48 . repeat_region 293496 293515 . ? . description=trf scaffold_48 . repeat_region 293541 293548 . ? . description=dust scaffold_48 ensembl protein_coding_gene 294256 295479 . - . ID=Phyra71791;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_48000005;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 294256 295479 . - . ID=Phyra71791;Parent=Phyra71791;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 294256 295479 . - 0 ID=Phyra71791;Parent=Phyra71791;rank=1 scaffold_48 . exon 294256 295479 . - . ID=Phyra71791.1;Parent=Phyra71791;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 286146 287295 . - . ID=Phyra80375;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000087;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 286146 287295 . - . ID=Phyra80375;Parent=Phyra80375;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 286146 286200 . - 0 ID=Phyra80375;Parent=Phyra80375;rank=3 scaffold_48 . exon 286146 286200 . - . ID=Phyra80375.3;Parent=Phyra80375;constitutive=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 286225 286292 . - 0 ID=Phyra80375;Parent=Phyra80375;rank=2 scaffold_48 . exon 286225 286292 . - . ID=Phyra80375.2;Parent=Phyra80375;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_48 . CDS 286381 287295 . - 0 ID=Phyra80375;Parent=Phyra80375;rank=1 scaffold_48 . exon 286381 287295 . - . ID=Phyra80375.1;Parent=Phyra80375;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 287544 288197 . + . ID=Phyra80376;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000088;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 287544 288197 . + . ID=Phyra80376;Parent=Phyra80376;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 287544 288197 . + 0 ID=Phyra80376;Parent=Phyra80376;rank=1 scaffold_48 . exon 287544 288197 . + . ID=Phyra80376.1;Parent=Phyra80376;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 288827 290277 . + . ID=Phyra80377;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000089;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 288827 290277 . + . ID=Phyra80377;Parent=Phyra80377;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 288827 289031 . + 0 ID=Phyra80377;Parent=Phyra80377;rank=1 scaffold_48 . exon 288827 289031 . + . ID=Phyra80377.1;Parent=Phyra80377;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 289089 289220 . + 0 ID=Phyra80377;Parent=Phyra80377;rank=2 scaffold_48 . exon 289089 289220 . + . ID=Phyra80377.2;Parent=Phyra80377;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 289286 290277 . + 0 ID=Phyra80377;Parent=Phyra80377;rank=3 scaffold_48 . exon 289286 290277 . + . ID=Phyra80377.3;Parent=Phyra80377;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 ensembl protein_coding_gene 290680 291543 . - . ID=Phyra95699;biotype=protein_coding;external_name=C_scaffold_48000036;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 290680 291543 . - . ID=Phyra95699;Parent=Phyra95699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 290680 291153 . - 0 ID=Phyra95699;Parent=Phyra95699;rank=2 scaffold_48 . exon 290680 291153 . - . ID=Phyra95699.2;Parent=Phyra95699;constitutive=1;rank=2 scaffold_48 . CDS 291316 291543 . - 0 ID=Phyra95699;Parent=Phyra95699;rank=1 scaffold_48 . exon 291316 291543 . - . ID=Phyra95699.1;Parent=Phyra95699;constitutive=1;rank=1 scaffold_48 . biological_region 295384 295385 0.999 - . logic_name=eponine scaffold_48 . biological_region 295441 295441 0.999 + . logic_name=eponine scaffold_48 . biological_region 297004 297011 0.999 + . logic_name=eponine scaffold_48 . biological_region 297062 297066 0.999 - . logic_name=eponine scaffold_48 . biological_region 297210 297210 0.999 + . logic_name=eponine scaffold_48 . biological_region 297220 297224 0.999 - . logic_name=eponine scaffold_48 . biological_region 297411 297415 0.999 + . logic_name=eponine scaffold_48 . biological_region 297574 297578 0.999 - . logic_name=eponine scaffold_48 . biological_region 297818 297821 0.999 - . logic_name=eponine scaffold_48 . biological_region 301583 301583 0.999 - . logic_name=eponine scaffold_48 ensembl protein_coding_gene 297110 309661 . + . ID=Phyra80380;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000092;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 297110 309661 . + . ID=Phyra80380;Parent=Phyra80380;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 297110 299932 . + 0 ID=Phyra80380;Parent=Phyra80380;rank=1 scaffold_48 . exon 297110 299932 . + . ID=Phyra80380.1;Parent=Phyra80380;constitutive=1;rank=1 scaffold_48 . CDS 299986 300040 . + 0 ID=Phyra80380;Parent=Phyra80380;rank=2 scaffold_48 . exon 299986 300040 . + . ID=Phyra80380.2;Parent=Phyra80380;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_48 . CDS 300118 300213 . + 0 ID=Phyra80380;Parent=Phyra80380;rank=3 scaffold_48 . exon 300118 300213 . + . ID=Phyra80380.3;Parent=Phyra80380;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 300285 300607 . + 0 ID=Phyra80380;Parent=Phyra80380;rank=4 scaffold_48 . exon 300285 300607 . + . ID=Phyra80380.4;Parent=Phyra80380;constitutive=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 300671 300803 . + 0 ID=Phyra80380;Parent=Phyra80380;rank=5 scaffold_48 . exon 300671 300803 . + . ID=Phyra80380.5;Parent=Phyra80380;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_48 . CDS 300862 300942 . + 0 ID=Phyra80380;Parent=Phyra80380;rank=6 scaffold_48 . exon 300862 300942 . + . ID=Phyra80380.6;Parent=Phyra80380;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_48 . CDS 301221 301568 . + 0 ID=Phyra80380;Parent=Phyra80380;rank=7 scaffold_48 . exon 301221 301568 . + . ID=Phyra80380.7;Parent=Phyra80380;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_48 . CDS 301634 303198 . + 0 ID=Phyra80380;Parent=Phyra80380;rank=8 scaffold_48 . exon 301634 303198 . + . ID=Phyra80380.8;Parent=Phyra80380;constitutive=1;ensembl_phase=1;rank=8 scaffold_48 . CDS 303292 303520 . + 0 ID=Phyra80380;Parent=Phyra80380;rank=9 scaffold_48 . exon 303292 303520 . + . ID=Phyra80380.9;Parent=Phyra80380;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_48 . CDS 303953 304398 . + 0 ID=Phyra80380;Parent=Phyra80380;rank=10 scaffold_48 . exon 303953 304398 . + . ID=Phyra80380.10;Parent=Phyra80380;constitutive=1;ensembl_phase=1;rank=10 scaffold_48 . CDS 304475 309661 . + 0 ID=Phyra80380;Parent=Phyra80380;rank=11 scaffold_48 . repeat_region 311371 311500 . ? . description=trf scaffold_48 . repeat_region 312138 312171 . ? . description=dust scaffold_48 . repeat_region 312139 312168 . ? . description=trf scaffold_48 . repeat_region 312148 312183 . ? . description=trf scaffold_48 . repeat_region 312332 312364 . ? . description=dust scaffold_48 . exon 304475 309661 . + . ID=Phyra80380.11;Parent=Phyra80380;constitutive=1;rank=11 scaffold_48 ensembl protein_coding_gene 309737 311300 . - . ID=Phyra80381;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000093;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 309737 311300 . - . ID=Phyra80381;Parent=Phyra80381;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 309737 310595 . - 0 ID=Phyra80381;Parent=Phyra80381;rank=3 scaffold_48 . exon 309737 310595 . - . ID=Phyra80381.3;Parent=Phyra80381;constitutive=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 310663 310995 . - 0 ID=Phyra80381;Parent=Phyra80381;rank=2 scaffold_48 . exon 310663 310995 . - . ID=Phyra80381.2;Parent=Phyra80381;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_48 . CDS 311074 311300 . - 0 ID=Phyra80381;Parent=Phyra80381;rank=1 scaffold_48 . exon 311074 311300 . - . ID=Phyra80381.1;Parent=Phyra80381;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 ensembl protein_coding_gene 311587 312579 . + . ID=Phyra80382;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000094;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 311587 312579 . + . ID=Phyra80382;Parent=Phyra80382;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 311587 312579 . + 0 ID=Phyra80382;Parent=Phyra80382;rank=1 scaffold_48 . exon 311587 312579 . + . ID=Phyra80382.1;Parent=Phyra80382;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 313322 314282 . - . ID=Phyra80383;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000095;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 313322 314282 . - . ID=Phyra80383;Parent=Phyra80383;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 313322 313339 . - 0 ID=Phyra80383;Parent=Phyra80383;rank=2 scaffold_48 . exon 313322 313339 . - . ID=Phyra80383.2;Parent=Phyra80383;constitutive=1;rank=2 scaffold_48 . CDS 313362 314282 . - 0 ID=Phyra80383;Parent=Phyra80383;rank=1 scaffold_48 . exon 313362 314282 . - . ID=Phyra80383.1;Parent=Phyra80383;constitutive=1;rank=1 scaffold_48 . biological_region 314480 314483 0.999 + . logic_name=eponine scaffold_48 . biological_region 314526 314527 0.999 - . logic_name=eponine scaffold_48 . biological_region 314531 314535 0.999 + . logic_name=eponine scaffold_48 . biological_region 314583 314586 0.999 - . logic_name=eponine scaffold_48 . biological_region 314652 314656 0.999 + . logic_name=eponine scaffold_48 . biological_region 317976 317977 0.999 - . logic_name=eponine scaffold_48 ensembl protein_coding_gene 314553 320317 . + . ID=Phyra80384;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000096;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 314553 320317 . + . ID=Phyra80384;Parent=Phyra80384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 314553 314604 . + 0 ID=Phyra80384;Parent=Phyra80384;rank=1 scaffold_48 . exon 314553 314604 . + . ID=Phyra80384.1;Parent=Phyra80384;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 314679 320317 . + 0 ID=Phyra80384;Parent=Phyra80384;rank=2 scaffold_48 . exon 314679 320317 . + . ID=Phyra80384.2;Parent=Phyra80384;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 ensembl protein_coding_gene 320412 322351 . - . ID=Phyra80385;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000097;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 320412 322351 . - . ID=Phyra80385;Parent=Phyra80385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 320412 320776 . - 0 ID=Phyra80385;Parent=Phyra80385;rank=4 scaffold_48 . exon 320412 320776 . - . ID=Phyra80385.4;Parent=Phyra80385;constitutive=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 320822 321265 . - 0 ID=Phyra80385;Parent=Phyra80385;rank=3 scaffold_48 . exon 320822 321265 . - . ID=Phyra80385.3;Parent=Phyra80385;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 321497 322066 . - 0 ID=Phyra80385;Parent=Phyra80385;rank=2 scaffold_48 . exon 321497 322066 . - . ID=Phyra80385.2;Parent=Phyra80385;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 322267 322351 . - 0 ID=Phyra80385;Parent=Phyra80385;rank=1 scaffold_48 . exon 322267 322351 . - . ID=Phyra80385.1;Parent=Phyra80385;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 ensembl protein_coding_gene 332110 333576 . - . ID=Phyra49578;biotype=protein_coding;external_name=gwEuk.48.73.1;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 332110 333576 . - . ID=Phyra49578;Parent=Phyra49578;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 332110 333576 . - 0 ID=Phyra49578;Parent=Phyra49578;rank=1 scaffold_48 . exon 332110 333576 . - . ID=Phyra49578.1;Parent=Phyra49578;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 326489 327375 . + . ID=Phyra80386;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000098;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 326489 327375 . + . ID=Phyra80386;Parent=Phyra80386;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 326489 326719 . + 0 ID=Phyra80386;Parent=Phyra80386;rank=1 scaffold_48 . exon 326489 326719 . + . ID=Phyra80386.1;Parent=Phyra80386;constitutive=1;rank=1 scaffold_48 . CDS 326794 326884 . + 0 ID=Phyra80386;Parent=Phyra80386;rank=2 scaffold_48 . exon 326794 326884 . + . ID=Phyra80386.2;Parent=Phyra80386;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_48 . CDS 326955 327193 . + 0 ID=Phyra80386;Parent=Phyra80386;rank=3 scaffold_48 . exon 326955 327193 . + . ID=Phyra80386.3;Parent=Phyra80386;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 327277 327375 . + 0 ID=Phyra80386;Parent=Phyra80386;rank=4 scaffold_48 . exon 327277 327375 . + . ID=Phyra80386.4;Parent=Phyra80386;constitutive=1;rank=4 scaffold_48 ensembl protein_coding_gene 328685 329884 . + . ID=Phyra80388;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000100;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 328685 329884 . + . ID=Phyra80388;Parent=Phyra80388;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 328685 329884 . + 0 ID=Phyra80388;Parent=Phyra80388;rank=1 scaffold_48 . exon 328685 329884 . + . ID=Phyra80388.1;Parent=Phyra80388;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 330247 331779 . - . ID=Phyra80389;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000101;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 330247 331779 . - . ID=Phyra80389;Parent=Phyra80389;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 330247 331779 . - 0 ID=Phyra80389;Parent=Phyra80389;rank=1 scaffold_48 . exon 330247 331779 . - . ID=Phyra80389.1;Parent=Phyra80389;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 327565 328311 . - . ID=Phyra95703;biotype=protein_coding;external_name=C_scaffold_48000040;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 327565 328311 . - . ID=Phyra95703;Parent=Phyra95703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 327565 327996 . - 0 ID=Phyra95703;Parent=Phyra95703;rank=3 scaffold_48 . exon 327565 327996 . - . ID=Phyra95703.3;Parent=Phyra95703;constitutive=1;rank=3 scaffold_48 . CDS 328067 328131 . - 0 ID=Phyra95703;Parent=Phyra95703;rank=2 scaffold_48 . exon 328067 328131 . - . ID=Phyra95703.2;Parent=Phyra95703;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 328200 328311 . - 0 ID=Phyra95703;Parent=Phyra95703;rank=1 scaffold_48 . exon 328200 328311 . - . ID=Phyra95703.1;Parent=Phyra95703;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . repeat_region 337090 337125 . ? . description=trf scaffold_48 . repeat_region 339424 339431 . ? . description=dust scaffold_48 . repeat_region 339765 339796 . ? . description=trf scaffold_48 . repeat_region 340284 340292 . ? . description=dust scaffold_48 . repeat_region 343185 343211 . ? . description=trf scaffold_48 ensembl pseudogene 340522 340922 . + . ID=Phyra49579;biotype=pseudogene;external_name=gwEuk.48.74.1;logic_name=jgi_phyra1 scaffold_48 ensembl pseudogene 340522 340922 . + . ID=Phyra49579;Parent=Phyra49579;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_48 . exon 340522 340922 . + . ID=Phyra49579.1;Parent=Phyra49579;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 ensembl protein_coding_gene 337060 338713 . + . ID=Phyra80391;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000103;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 337060 338713 . + . ID=Phyra80391;Parent=Phyra80391;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 337060 337386 . + 0 ID=Phyra80391;Parent=Phyra80391;rank=1 scaffold_48 . exon 337060 337386 . + . ID=Phyra80391.1;Parent=Phyra80391;constitutive=1;rank=1 scaffold_48 . CDS 337500 337577 . + 0 ID=Phyra80391;Parent=Phyra80391;rank=2 scaffold_48 . exon 337500 337577 . + . ID=Phyra80391.2;Parent=Phyra80391;constitutive=1;rank=2 scaffold_48 . CDS 337681 337969 . + 0 ID=Phyra80391;Parent=Phyra80391;rank=3 scaffold_48 . exon 337681 337969 . + . ID=Phyra80391.3;Parent=Phyra80391;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_48 . CDS 338289 338713 . + 0 ID=Phyra80391;Parent=Phyra80391;rank=4 scaffold_48 . exon 338289 338713 . + . ID=Phyra80391.4;Parent=Phyra80391;constitutive=1;ensembl_phase=1;rank=4 scaffold_48 . biological_region 347551 347552 0.999 + . logic_name=eponine scaffold_48 . biological_region 347665 347667 0.999 - . logic_name=eponine scaffold_48 ensembl protein_coding_gene 351206 351469 . - . ID=Phyra49580;biotype=protein_coding;external_name=gwEuk.48.75.1;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 351206 351469 . - . ID=Phyra49580;Parent=Phyra49580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 351206 351469 . - 0 ID=Phyra49580;Parent=Phyra49580;rank=1 scaffold_48 . exon 351206 351469 . - . ID=Phyra49580.1;Parent=Phyra49580;constitutive=1;rank=1 scaffold_48 . repeat_region 354304 354356 . ? . description=trf scaffold_48 . repeat_region 354304 354361 . ? . description=trf scaffold_48 . repeat_region 356059 356073 . ? . description=dust scaffold_48 . repeat_region 357108 357116 . ? . description=dust scaffold_48 . repeat_region 358655 360968 . ? . description=dust scaffold_48 . repeat_region 362132 362191 . ? . description=trf scaffold_48 . repeat_region 362189 362218 . ? . description=trf scaffold_48 . repeat_region 362425 363542 . ? . description=dust scaffold_48 ensembl protein_coding_gene 354141 355029 . - . ID=Phyra80392;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000104;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 354141 355029 . - . ID=Phyra80392;Parent=Phyra80392;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 354141 354295 . - 0 ID=Phyra80392;Parent=Phyra80392;rank=2 scaffold_48 . exon 354141 354295 . - . ID=Phyra80392.2;Parent=Phyra80392;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 354360 355029 . - 0 ID=Phyra80392;Parent=Phyra80392;rank=1 scaffold_48 . exon 354360 355029 . - . ID=Phyra80392.1;Parent=Phyra80392;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . repeat_region 373919 374001 . ? . description=trf scaffold_48 . biological_region 374608 374612 0.999 + . logic_name=eponine scaffold_48 . repeat_region 375424 375473 . ? . description=dust scaffold_48 . biological_region 378777 378778 0.999 - . logic_name=eponine scaffold_48 . repeat_region 378955 378967 . ? . description=dust scaffold_48 . biological_region 379656 379661 0.999 + . logic_name=eponine scaffold_48 . biological_region 379842 379844 0.999 + . logic_name=eponine scaffold_48 . biological_region 381153 381160 0.999 + . logic_name=eponine scaffold_48 . repeat_region 382574 382582 . ? . description=dust scaffold_48 ensembl protein_coding_gene 377716 378048 . + . ID=Phyra49581;biotype=protein_coding;external_name=gwEuk.48.76.1;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 377716 378048 . + . ID=Phyra49581;Parent=Phyra49581;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 377716 378048 . + 0 ID=Phyra49581;Parent=Phyra49581;rank=1 scaffold_48 . exon 377716 378048 . + . ID=Phyra49581.1;Parent=Phyra49581;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 374457 376716 . + . ID=Phyra80393;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000105;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 374457 376716 . + . ID=Phyra80393;Parent=Phyra80393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 374457 374591 . + 0 ID=Phyra80393;Parent=Phyra80393;rank=1 scaffold_48 . exon 374457 374591 . + . ID=Phyra80393.1;Parent=Phyra80393;constitutive=1;rank=1 scaffold_48 . CDS 374694 375209 . + 0 ID=Phyra80393;Parent=Phyra80393;rank=2 scaffold_48 . exon 374694 375209 . + . ID=Phyra80393.2;Parent=Phyra80393;constitutive=1;rank=2 scaffold_48 . CDS 375656 375934 . + 0 ID=Phyra80393;Parent=Phyra80393;rank=3 scaffold_48 . exon 375656 375934 . + . ID=Phyra80393.3;Parent=Phyra80393;constitutive=1;rank=3 scaffold_48 . CDS 376048 376566 . + 0 ID=Phyra80393;Parent=Phyra80393;rank=4 scaffold_48 . exon 376048 376566 . + . ID=Phyra80393.4;Parent=Phyra80393;constitutive=1;rank=4 scaffold_48 . CDS 376609 376716 . + 0 ID=Phyra80393;Parent=Phyra80393;rank=5 scaffold_48 . exon 376609 376716 . + . ID=Phyra80393.5;Parent=Phyra80393;constitutive=1;rank=5 scaffold_48 ensembl protein_coding_gene 379669 380319 . - . ID=Phyra80394;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_48000106;logic_name=jgi_phyra1 scaffold_48 ensembl transcript 379669 380319 . - . ID=Phyra80394;Parent=Phyra80394;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_48 . CDS 379669 380319 . - 0 ID=Phyra80394;Parent=Phyra80394;rank=1 scaffold_48 . exon 379669 380319 . - . ID=Phyra80394.1;Parent=Phyra80394;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_47 1 385508 scaffold_47 . biological_region 930 931 0.999 + . logic_name=eponine scaffold_47 . repeat_region 2179 2254 . ? . description=trf scaffold_47 . biological_region 2636 2641 0.999 - . logic_name=eponine scaffold_47 . biological_region 4804 4807 0.999 - . logic_name=eponine scaffold_47 . biological_region 4829 4829 0.999 - . logic_name=eponine scaffold_47 ensembl protein_coding_gene 1612 3448 . + . ID=Phyra80179;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000001;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 1612 3448 . + . ID=Phyra80179;Parent=Phyra80179;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 1612 2330 . + 0 ID=Phyra80179;Parent=Phyra80179;rank=1 scaffold_47 . exon 1612 2330 . + . ID=Phyra80179.1;Parent=Phyra80179;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 2401 3448 . + 0 ID=Phyra80179;Parent=Phyra80179;rank=2 scaffold_47 . exon 2401 3448 . + . ID=Phyra80179.2;Parent=Phyra80179;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 ensembl protein_coding_gene 9105 10157 . + . ID=Phyra80182;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000004;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 9105 10157 . + . ID=Phyra80182;Parent=Phyra80182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 9105 10157 . + 0 ID=Phyra80182;Parent=Phyra80182;rank=1 scaffold_47 . exon 9105 10157 . + . ID=Phyra80182.1;Parent=Phyra80182;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 3580 8806 . - . ID=Phyra95616;biotype=protein_coding;external_name=C_scaffold_47000003;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 3580 8806 . - . ID=Phyra95616;Parent=Phyra95616;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 3580 5725 . - 0 ID=Phyra95616;Parent=Phyra95616;rank=6 scaffold_47 . exon 3580 5725 . - . ID=Phyra95616.6;Parent=Phyra95616;constitutive=1;ensembl_phase=2;rank=6 scaffold_47 . CDS 5747 7069 . - 0 ID=Phyra95616;Parent=Phyra95616;rank=5 scaffold_47 . exon 5747 7069 . - . ID=Phyra95616.5;Parent=Phyra95616;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_47 . CDS 7141 7701 . - 0 ID=Phyra95616;Parent=Phyra95616;rank=4 scaffold_47 . exon 7141 7701 . - . ID=Phyra95616.4;Parent=Phyra95616;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_47 . CDS 7889 8393 . - 0 ID=Phyra95616;Parent=Phyra95616;rank=3 scaffold_47 . exon 7889 8393 . - . ID=Phyra95616.3;Parent=Phyra95616;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_47 . CDS 8430 8551 . - 0 ID=Phyra95616;Parent=Phyra95616;rank=2 scaffold_47 . exon 8430 8551 . - . ID=Phyra95616.2;Parent=Phyra95616;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 8760 8806 . - 0 ID=Phyra95616;Parent=Phyra95616;rank=1 scaffold_47 . exon 8760 8806 . - . ID=Phyra95616.1;Parent=Phyra95616;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . repeat_region 11277 11284 . ? . description=dust scaffold_47 ensembl protein_coding_gene 13341 13872 . - . ID=Phyra49472;biotype=protein_coding;external_name=gwEuk.47.30.1;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 13341 13872 . - . ID=Phyra49472;Parent=Phyra49472;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 13341 13692 . - 0 ID=Phyra49472;Parent=Phyra49472;rank=2 scaffold_47 . exon 13341 13692 . - . ID=Phyra49472.2;Parent=Phyra49472;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 13763 13872 . - 0 ID=Phyra49472;Parent=Phyra49472;rank=1 scaffold_47 . exon 13763 13872 . - . ID=Phyra49472.1;Parent=Phyra49472;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 ensembl protein_coding_gene 12261 12755 . - . ID=Phyra80183;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000005;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 12261 12755 . - . ID=Phyra80183;Parent=Phyra80183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 12261 12755 . - 0 ID=Phyra80183;Parent=Phyra80183;rank=1 scaffold_47 . exon 12261 12755 . - . ID=Phyra80183.1;Parent=Phyra80183;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 15114 20356 . - . ID=Phyra80185;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000007;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 15114 20356 . - . ID=Phyra80185;Parent=Phyra80185;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 15114 15163 . - 0 ID=Phyra80185;Parent=Phyra80185;rank=8 scaffold_47 . exon 15114 15163 . - . ID=Phyra80185.8;Parent=Phyra80185;constitutive=1;ensembl_phase=1;rank=8 scaffold_47 . CDS 15227 17469 . - 0 ID=Phyra80185;Parent=Phyra80185;rank=7 scaffold_47 . exon 15227 17469 . - . ID=Phyra80185.7;Parent=Phyra80185;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_47 . CDS 17750 17945 . - 0 ID=Phyra80185;Parent=Phyra80185;rank=6 scaffold_47 . exon 17750 17945 . - . ID=Phyra80185.6;Parent=Phyra80185;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_47 . CDS 18150 18362 . - 0 ID=Phyra80185;Parent=Phyra80185;rank=5 scaffold_47 . exon 18150 18362 . - . ID=Phyra80185.5;Parent=Phyra80185;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_47 . CDS 18424 19147 . - 0 ID=Phyra80185;Parent=Phyra80185;rank=4 scaffold_47 . exon 18424 19147 . - . ID=Phyra80185.4;Parent=Phyra80185;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_47 . CDS 19211 19347 . - 0 ID=Phyra80185;Parent=Phyra80185;rank=3 scaffold_47 . exon 19211 19347 . - . ID=Phyra80185.3;Parent=Phyra80185;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 19460 20241 . - 0 ID=Phyra80185;Parent=Phyra80185;rank=2 scaffold_47 . exon 19460 20241 . - . ID=Phyra80185.2;Parent=Phyra80185;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 20277 20356 . - 0 ID=Phyra80185;Parent=Phyra80185;rank=1 scaffold_47 . repeat_region 21326 21553 . ? . description=trf scaffold_47 . repeat_region 21458 21503 . ? . description=trf scaffold_47 . repeat_region 22095 22155 . ? . description=trf scaffold_47 . biological_region 22166 22169 0.999 - . logic_name=eponine scaffold_47 . biological_region 22395 22397 0.999 - . logic_name=eponine scaffold_47 . biological_region 23209 23214 0.999 + . logic_name=eponine scaffold_47 . biological_region 26677 26681 0.999 + . logic_name=eponine scaffold_47 . biological_region 26696 26697 0.999 + . logic_name=eponine scaffold_47 . biological_region 26903 26904 0.999 - . logic_name=eponine scaffold_47 . biological_region 26944 26945 0.999 + . logic_name=eponine scaffold_47 . biological_region 27430 27436 0.999 - . logic_name=eponine scaffold_47 . biological_region 28312 28315 0.999 - . logic_name=eponine scaffold_47 . biological_region 28915 28916 0.999 - . logic_name=eponine scaffold_47 . exon 20277 20356 . - . ID=Phyra80185.1;Parent=Phyra80185;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 ensembl protein_coding_gene 20938 21756 . - . ID=Phyra80186;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000008;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 20938 21756 . - . ID=Phyra80186;Parent=Phyra80186;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 20938 21756 . - 0 ID=Phyra80186;Parent=Phyra80186;rank=1 scaffold_47 . exon 20938 21756 . - . ID=Phyra80186.1;Parent=Phyra80186;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 22169 24402 . + . ID=Phyra80187;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000009;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 22169 24402 . + . ID=Phyra80187;Parent=Phyra80187;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 22169 22236 . + 0 ID=Phyra80187;Parent=Phyra80187;rank=1 scaffold_47 . exon 22169 22236 . + . ID=Phyra80187.1;Parent=Phyra80187;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 22308 22452 . + 0 ID=Phyra80187;Parent=Phyra80187;rank=2 scaffold_47 . exon 22308 22452 . + . ID=Phyra80187.2;Parent=Phyra80187;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 22513 22690 . + 0 ID=Phyra80187;Parent=Phyra80187;rank=3 scaffold_47 . exon 22513 22690 . + . ID=Phyra80187.3;Parent=Phyra80187;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_47 . CDS 22751 24402 . + 0 ID=Phyra80187;Parent=Phyra80187;rank=4 scaffold_47 . exon 22751 24402 . + . ID=Phyra80187.4;Parent=Phyra80187;constitutive=1;ensembl_phase=1;rank=4 scaffold_47 ensembl protein_coding_gene 24470 27007 . - . ID=Phyra80188;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000010;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 24470 27007 . - . ID=Phyra80188;Parent=Phyra80188;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 24470 26341 . - 0 ID=Phyra80188;Parent=Phyra80188;rank=3 scaffold_47 . exon 24470 26341 . - . ID=Phyra80188.3;Parent=Phyra80188;constitutive=1;rank=3 scaffold_47 . CDS 26436 26543 . - 0 ID=Phyra80188;Parent=Phyra80188;rank=2 scaffold_47 . exon 26436 26543 . - . ID=Phyra80188.2;Parent=Phyra80188;constitutive=1;rank=2 scaffold_47 . CDS 26609 27007 . - 0 ID=Phyra80188;Parent=Phyra80188;rank=1 scaffold_47 . exon 26609 27007 . - . ID=Phyra80188.1;Parent=Phyra80188;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 27485 33275 . + . ID=Phyra80189;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000011;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 27485 33275 . + . ID=Phyra80189;Parent=Phyra80189;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 27485 27870 . + 0 ID=Phyra80189;Parent=Phyra80189;rank=1 scaffold_47 . exon 27485 27870 . + . ID=Phyra80189.1;Parent=Phyra80189;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 27999 28719 . + 0 ID=Phyra80189;Parent=Phyra80189;rank=2 scaffold_47 . exon 27999 28719 . + . ID=Phyra80189.2;Parent=Phyra80189;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 28811 31407 . + 0 ID=Phyra80189;Parent=Phyra80189;rank=3 scaffold_47 . exon 28811 31407 . + . ID=Phyra80189.3;Parent=Phyra80189;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_47 . CDS 31903 32751 . + 0 ID=Phyra80189;Parent=Phyra80189;rank=4 scaffold_47 . CDS 32823 32892 . + 0 ID=Phyra80189;Parent=Phyra80189;rank=5 scaffold_47 . CDS 32952 33275 . + 0 ID=Phyra80189;Parent=Phyra80189;rank=6 scaffold_47 . repeat_region 37537 37544 . ? . description=dust scaffold_47 . exon 31903 32751 . + . ID=Phyra80189.4;Parent=Phyra80189;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_47 . exon 32823 32892 . + . ID=Phyra80189.5;Parent=Phyra80189;constitutive=1;ensembl_phase=2;rank=5 scaffold_47 . exon 32952 33275 . + . ID=Phyra80189.6;Parent=Phyra80189;constitutive=1;rank=6 scaffold_47 ensembl protein_coding_gene 34626 37154 . - . ID=Phyra80190;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000012;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 34626 37154 . - . ID=Phyra80190;Parent=Phyra80190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 34626 35679 . - 0 ID=Phyra80190;Parent=Phyra80190;rank=4 scaffold_47 . exon 34626 35679 . - . ID=Phyra80190.4;Parent=Phyra80190;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 . CDS 35745 36282 . - 0 ID=Phyra80190;Parent=Phyra80190;rank=3 scaffold_47 . exon 35745 36282 . - . ID=Phyra80190.3;Parent=Phyra80190;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_47 . CDS 36386 36881 . - 0 ID=Phyra80190;Parent=Phyra80190;rank=2 scaffold_47 . exon 36386 36881 . - . ID=Phyra80190.2;Parent=Phyra80190;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . CDS 36957 37154 . - 0 ID=Phyra80190;Parent=Phyra80190;rank=1 scaffold_47 . exon 36957 37154 . - . ID=Phyra80190.1;Parent=Phyra80190;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 39539 42289 . + . ID=Phyra80191;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000013;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 39539 42289 . + . ID=Phyra80191;Parent=Phyra80191;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 39539 42289 . + 0 ID=Phyra80191;Parent=Phyra80191;rank=1 scaffold_47 . exon 39539 42289 . + . ID=Phyra80191.1;Parent=Phyra80191;constitutive=1;rank=1 scaffold_47 . biological_region 41868 41873 0.999 - . logic_name=eponine scaffold_47 . repeat_region 42186 42223 . ? . description=trf scaffold_47 . biological_region 44409 44413 0.999 + . logic_name=eponine scaffold_47 ensembl protein_coding_gene 42479 44534 . + . ID=Phyra80192;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000014;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 42479 44534 . + . ID=Phyra80192;Parent=Phyra80192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 42479 43057 . + 0 ID=Phyra80192;Parent=Phyra80192;rank=1 scaffold_47 . exon 42479 43057 . + . ID=Phyra80192.1;Parent=Phyra80192;constitutive=1;rank=1 scaffold_47 . CDS 43724 43781 . + 0 ID=Phyra80192;Parent=Phyra80192;rank=2 scaffold_47 . exon 43724 43781 . + . ID=Phyra80192.2;Parent=Phyra80192;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . CDS 43899 44326 . + 0 ID=Phyra80192;Parent=Phyra80192;rank=3 scaffold_47 . exon 43899 44326 . + . ID=Phyra80192.3;Parent=Phyra80192;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 44472 44534 . + 0 ID=Phyra80192;Parent=Phyra80192;rank=4 scaffold_47 . exon 44472 44534 . + . ID=Phyra80192.4;Parent=Phyra80192;constitutive=1;rank=4 scaffold_47 ensembl protein_coding_gene 47234 48826 . + . ID=Phyra80193;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000015;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 47234 48826 . + . ID=Phyra80193;Parent=Phyra80193;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 47234 47834 . + 0 ID=Phyra80193;Parent=Phyra80193;rank=1 scaffold_47 . exon 47234 47834 . + . ID=Phyra80193.1;Parent=Phyra80193;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 48096 48826 . + 0 ID=Phyra80193;Parent=Phyra80193;rank=2 scaffold_47 . exon 48096 48826 . + . ID=Phyra80193.2;Parent=Phyra80193;constitutive=1;ensembl_phase=1;rank=2 scaffold_47 . repeat_region 56441 60131 . ? . description=dust scaffold_47 ensembl protein_coding_gene 51523 53385 . + . ID=Phyra80194;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000016;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 51523 53385 . + . ID=Phyra80194;Parent=Phyra80194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 51523 53385 . + 0 ID=Phyra80194;Parent=Phyra80194;rank=1 scaffold_47 . exon 51523 53385 . + . ID=Phyra80194.1;Parent=Phyra80194;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 53449 55041 . - . ID=Phyra80195;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000017;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 53449 55041 . - . ID=Phyra80195;Parent=Phyra80195;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 53449 54179 . - 0 ID=Phyra80195;Parent=Phyra80195;rank=2 scaffold_47 . exon 53449 54179 . - . ID=Phyra80195.2;Parent=Phyra80195;constitutive=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 54441 55041 . - 0 ID=Phyra80195;Parent=Phyra80195;rank=1 scaffold_47 . exon 54441 55041 . - . ID=Phyra80195.1;Parent=Phyra80195;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . biological_region 63006 63011 0.999 - . logic_name=eponine scaffold_47 . repeat_region 65399 65445 . ? . description=trf scaffold_47 . repeat_region 65791 65875 . ? . description=trf scaffold_47 . repeat_region 65792 65874 . ? . description=trf scaffold_47 . repeat_region 65792 65874 . ? . description=trf scaffold_47 . repeat_region 65891 65927 . ? . description=trf scaffold_47 ensembl protein_coding_gene 62429 64953 . + . ID=Phyra80196;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000018;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 62429 64953 . + . ID=Phyra80196;Parent=Phyra80196;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 62429 62654 . + 0 ID=Phyra80196;Parent=Phyra80196;rank=1 scaffold_47 . exon 62429 62654 . + . ID=Phyra80196.1;Parent=Phyra80196;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 62814 63197 . + 0 ID=Phyra80196;Parent=Phyra80196;rank=2 scaffold_47 . exon 62814 63197 . + . ID=Phyra80196.2;Parent=Phyra80196;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 63301 63609 . + 0 ID=Phyra80196;Parent=Phyra80196;rank=3 scaffold_47 . exon 63301 63609 . + . ID=Phyra80196.3;Parent=Phyra80196;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 63765 63834 . + 0 ID=Phyra80196;Parent=Phyra80196;rank=4 scaffold_47 . exon 63765 63834 . + . ID=Phyra80196.4;Parent=Phyra80196;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_47 . CDS 63900 64953 . + 0 ID=Phyra80196;Parent=Phyra80196;rank=5 scaffold_47 . exon 63900 64953 . + . ID=Phyra80196.5;Parent=Phyra80196;constitutive=1;ensembl_phase=2;rank=5 scaffold_47 ensembl protein_coding_gene 65039 70092 . - . ID=Phyra95618;biotype=protein_coding;external_name=C_scaffold_47000005;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 65039 70092 . - . ID=Phyra95618;Parent=Phyra95618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 65039 65392 . - 0 ID=Phyra95618;Parent=Phyra95618;rank=7 scaffold_47 . exon 65039 65392 . - . ID=Phyra95618.7;Parent=Phyra95618;constitutive=1;rank=7 scaffold_47 . CDS 65459 65548 . - 0 ID=Phyra95618;Parent=Phyra95618;rank=6 scaffold_47 . exon 65459 65548 . - . ID=Phyra95618.6;Parent=Phyra95618;constitutive=1;rank=6 scaffold_47 . CDS 65611 65674 . - 0 ID=Phyra95618;Parent=Phyra95618;rank=5 scaffold_47 . exon 65611 65674 . - . ID=Phyra95618.5;Parent=Phyra95618;constitutive=1;ensembl_phase=2;rank=5 scaffold_47 . CDS 65747 66695 . - 0 ID=Phyra95618;Parent=Phyra95618;rank=4 scaffold_47 . exon 65747 66695 . - . ID=Phyra95618.4;Parent=Phyra95618;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_47 . CDS 66804 69318 . - 0 ID=Phyra95618;Parent=Phyra95618;rank=3 scaffold_47 . exon 66804 69318 . - . ID=Phyra95618.3;Parent=Phyra95618;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_47 . CDS 69460 69800 . - 0 ID=Phyra95618;Parent=Phyra95618;rank=2 scaffold_47 . CDS 70011 70092 . - 0 ID=Phyra95618;Parent=Phyra95618;rank=1 scaffold_47 . repeat_region 71196 71236 . ? . description=dust scaffold_47 ensembl protein_coding_gene 72426 73803 . - . ID=Phyra80200;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000022;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 72426 73803 . - . ID=Phyra80200;Parent=Phyra80200;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 72426 72539 . - 0 ID=Phyra80200;Parent=Phyra80200;rank=8 scaffold_47 . exon 72426 72539 . - . ID=Phyra80200.8;Parent=Phyra80200;constitutive=1;rank=8 scaffold_47 . CDS 72657 72746 . - 0 ID=Phyra80200;Parent=Phyra80200;rank=7 scaffold_47 . exon 72657 72746 . - . ID=Phyra80200.7;Parent=Phyra80200;constitutive=1;rank=7 scaffold_47 . CDS 72824 72880 . - 0 ID=Phyra80200;Parent=Phyra80200;rank=6 scaffold_47 . exon 72824 72880 . - . ID=Phyra80200.6;Parent=Phyra80200;constitutive=1;rank=6 scaffold_47 . CDS 72964 73051 . - 0 ID=Phyra80200;Parent=Phyra80200;rank=5 scaffold_47 . exon 72964 73051 . - . ID=Phyra80200.5;Parent=Phyra80200;constitutive=1;ensembl_phase=2;rank=5 scaffold_47 . CDS 73131 73357 . - 0 ID=Phyra80200;Parent=Phyra80200;rank=4 scaffold_47 . exon 73131 73357 . - . ID=Phyra80200.4;Parent=Phyra80200;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_47 . CDS 73445 73506 . - 0 ID=Phyra80200;Parent=Phyra80200;rank=3 scaffold_47 . exon 73445 73506 . - . ID=Phyra80200.3;Parent=Phyra80200;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 73579 73612 . - 0 ID=Phyra80200;Parent=Phyra80200;rank=2 scaffold_47 . exon 73579 73612 . - . ID=Phyra80200.2;Parent=Phyra80200;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . CDS 73726 73803 . - 0 ID=Phyra80200;Parent=Phyra80200;rank=1 scaffold_47 . exon 73726 73803 . - . ID=Phyra80200.1;Parent=Phyra80200;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 73995 74857 . + . ID=Phyra80201;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000023;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 73995 74857 . + . ID=Phyra80201;Parent=Phyra80201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 73995 74658 . + 0 ID=Phyra80201;Parent=Phyra80201;rank=1 scaffold_47 . exon 73995 74658 . + . ID=Phyra80201.1;Parent=Phyra80201;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 74715 74857 . + 0 ID=Phyra80201;Parent=Phyra80201;rank=2 scaffold_47 . exon 74715 74857 . + . ID=Phyra80201.2;Parent=Phyra80201;constitutive=1;ensembl_phase=1;rank=2 scaffold_47 ensembl protein_coding_gene 75738 76190 . + . ID=Phyra80202;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000024;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 75738 76190 . + . ID=Phyra80202;Parent=Phyra80202;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 75738 76190 . + 0 ID=Phyra80202;Parent=Phyra80202;rank=1 scaffold_47 . exon 75738 76190 . + . ID=Phyra80202.1;Parent=Phyra80202;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 76569 77072 . + . ID=Phyra80203;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000025;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 76569 77072 . + . ID=Phyra80203;Parent=Phyra80203;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 76569 77072 . + 0 ID=Phyra80203;Parent=Phyra80203;rank=1 scaffold_47 . exon 76569 77072 . + . ID=Phyra80203.1;Parent=Phyra80203;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 77943 78848 . + . ID=Phyra80204;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000026;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 77943 78848 . + . ID=Phyra80204;Parent=Phyra80204;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 77943 78848 . + 0 ID=Phyra80204;Parent=Phyra80204;rank=1 scaffold_47 . exon 77943 78848 . + . ID=Phyra80204.1;Parent=Phyra80204;constitutive=1;rank=1 scaffold_47 . exon 69460 69800 . - . ID=Phyra95618.2;Parent=Phyra95618;constitutive=1;ensembl_phase=1;rank=2 scaffold_47 . exon 70011 70092 . - . ID=Phyra95618.1;Parent=Phyra95618;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . biological_region 81832 81833 0.999 - . logic_name=eponine scaffold_47 . biological_region 87449 87456 0.999 - . logic_name=eponine scaffold_47 . biological_region 87542 87544 0.999 + . logic_name=eponine scaffold_47 ensembl protein_coding_gene 80593 81144 . - . ID=Phyra49493;biotype=protein_coding;external_name=gwEuk.47.51.1;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 80593 81144 . - . ID=Phyra49493;Parent=Phyra49493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 80593 80764 . - 0 ID=Phyra49493;Parent=Phyra49493;rank=3 scaffold_47 . exon 80593 80764 . - . ID=Phyra49493.3;Parent=Phyra49493;constitutive=1;ensembl_phase=2;rank=3 scaffold_47 . CDS 80822 80989 . - 0 ID=Phyra49493;Parent=Phyra49493;rank=2 scaffold_47 . exon 80822 80989 . - . ID=Phyra49493.2;Parent=Phyra49493;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_47 . CDS 81053 81144 . - 0 ID=Phyra49493;Parent=Phyra49493;rank=1 scaffold_47 . exon 81053 81144 . - . ID=Phyra49493.1;Parent=Phyra49493;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 ensembl protein_coding_gene 79786 80445 . + . ID=Phyra80205;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000027;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 79786 80445 . + . ID=Phyra80205;Parent=Phyra80205;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 79786 80445 . + 0 ID=Phyra80205;Parent=Phyra80205;rank=1 scaffold_47 . exon 79786 80445 . + . ID=Phyra80205.1;Parent=Phyra80205;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 81583 82880 . - . ID=Phyra80207;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000029;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 81583 82880 . - . ID=Phyra80207;Parent=Phyra80207;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 81583 81925 . - 0 ID=Phyra80207;Parent=Phyra80207;rank=2 scaffold_47 . exon 81583 81925 . - . ID=Phyra80207.2;Parent=Phyra80207;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 82087 82880 . - 0 ID=Phyra80207;Parent=Phyra80207;rank=1 scaffold_47 . exon 82087 82880 . - . ID=Phyra80207.1;Parent=Phyra80207;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 ensembl protein_coding_gene 84047 88399 . + . ID=Phyra80208;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000030;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 84047 88399 . + . ID=Phyra80208;Parent=Phyra80208;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 84047 88399 . + 0 ID=Phyra80208;Parent=Phyra80208;rank=1 scaffold_47 . exon 84047 88399 . + . ID=Phyra80208.1;Parent=Phyra80208;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 88571 89572 . - . ID=Phyra80209;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000031;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 88571 89572 . - . ID=Phyra80209;Parent=Phyra80209;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 88571 89572 . - 0 ID=Phyra80209;Parent=Phyra80209;rank=1 scaffold_47 . exon 88571 89572 . - . ID=Phyra80209.1;Parent=Phyra80209;constitutive=1;rank=1 scaffold_47 . repeat_region 92320 92382 . ? . description=trf scaffold_47 . repeat_region 92439 92557 . ? . description=trf scaffold_47 . repeat_region 92439 92584 . ? . description=trf scaffold_47 . repeat_region 92442 92653 . ? . description=trf scaffold_47 . repeat_region 92541 92596 . ? . description=trf scaffold_47 . repeat_region 92688 93015 . ? . description=trf scaffold_47 . repeat_region 92755 92902 . ? . description=trf scaffold_47 . repeat_region 92763 93015 . ? . description=trf scaffold_47 . repeat_region 96413 96624 . ? . description=trf scaffold_47 ensembl protein_coding_gene 92409 93459 . - . ID=Phyra80210;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000032;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 92409 93459 . - . ID=Phyra80210;Parent=Phyra80210;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 92409 92630 . - 0 ID=Phyra80210;Parent=Phyra80210;rank=4 scaffold_47 . exon 92409 92630 . - . ID=Phyra80210.4;Parent=Phyra80210;constitutive=1;rank=4 scaffold_47 . CDS 92693 92947 . - 0 ID=Phyra80210;Parent=Phyra80210;rank=3 scaffold_47 . exon 92693 92947 . - . ID=Phyra80210.3;Parent=Phyra80210;constitutive=1;rank=3 scaffold_47 . CDS 92977 93179 . - 0 ID=Phyra80210;Parent=Phyra80210;rank=2 scaffold_47 . exon 92977 93179 . - . ID=Phyra80210.2;Parent=Phyra80210;constitutive=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 93210 93459 . - 0 ID=Phyra80210;Parent=Phyra80210;rank=1 scaffold_47 . exon 93210 93459 . - . ID=Phyra80210.1;Parent=Phyra80210;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 ensembl protein_coding_gene 96980 98410 . - . ID=Phyra80213;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000035;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 96980 98410 . - . ID=Phyra80213;Parent=Phyra80213;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 96980 98410 . - 0 ID=Phyra80213;Parent=Phyra80213;rank=1 scaffold_47 . exon 96980 98410 . - . ID=Phyra80213.1;Parent=Phyra80213;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 94318 96784 . + . ID=Phyra95622;biotype=protein_coding;external_name=C_scaffold_47000009;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 94318 96784 . + . ID=Phyra95622;Parent=Phyra95622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 94318 94502 . + 0 ID=Phyra95622;Parent=Phyra95622;rank=1 scaffold_47 . exon 94318 94502 . + . ID=Phyra95622.1;Parent=Phyra95622;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 94629 94961 . + 0 ID=Phyra95622;Parent=Phyra95622;rank=2 scaffold_47 . exon 94629 94961 . + . ID=Phyra95622.2;Parent=Phyra95622;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_47 . CDS 95177 95807 . + 0 ID=Phyra95622;Parent=Phyra95622;rank=3 scaffold_47 . exon 95177 95807 . + . ID=Phyra95622.3;Parent=Phyra95622;constitutive=1;ensembl_phase=2;rank=3 scaffold_47 . CDS 95871 96317 . + 0 ID=Phyra95622;Parent=Phyra95622;rank=4 scaffold_47 . exon 95871 96317 . + . ID=Phyra95622.4;Parent=Phyra95622;constitutive=1;rank=4 scaffold_47 . CDS 96465 96641 . + 0 ID=Phyra95622;Parent=Phyra95622;rank=5 scaffold_47 . exon 96465 96641 . + . ID=Phyra95622.5;Parent=Phyra95622;constitutive=1;rank=5 scaffold_47 . CDS 96704 96784 . + 0 ID=Phyra95622;Parent=Phyra95622;rank=6 scaffold_47 . exon 96704 96784 . + . ID=Phyra95622.6;Parent=Phyra95622;constitutive=1;rank=6 scaffold_47 . repeat_region 102086 102094 . ? . description=dust scaffold_47 . biological_region 102620 102624 0.999 - . logic_name=eponine scaffold_47 . biological_region 102655 102658 0.999 - . logic_name=eponine scaffold_47 . biological_region 102660 102664 0.999 + . logic_name=eponine scaffold_47 . biological_region 102773 102778 0.999 - . logic_name=eponine scaffold_47 . biological_region 102812 102816 0.999 + . logic_name=eponine scaffold_47 . biological_region 102841 102844 0.999 - . logic_name=eponine scaffold_47 . biological_region 102899 102900 0.999 - . logic_name=eponine scaffold_47 . biological_region 103302 103306 0.999 + . logic_name=eponine scaffold_47 . repeat_region 104805 104832 . ? . description=dust scaffold_47 . repeat_region 107366 107387 . ? . description=dust scaffold_47 ensembl protein_coding_gene 99776 100354 . - . ID=Phyra49497;biotype=protein_coding;external_name=gwEuk.47.55.1;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 99776 100354 . - . ID=Phyra49497;Parent=Phyra49497;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 99776 100354 . - 0 ID=Phyra49497;Parent=Phyra49497;rank=1 scaffold_47 . exon 99776 100354 . - . ID=Phyra49497.1;Parent=Phyra49497;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 101460 103213 . - . ID=Phyra80215;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000037;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 101460 103213 . - . ID=Phyra80215;Parent=Phyra80215;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 101460 101523 . - 0 ID=Phyra80215;Parent=Phyra80215;rank=4 scaffold_47 . exon 101460 101523 . - . ID=Phyra80215.4;Parent=Phyra80215;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 . CDS 101688 102042 . - 0 ID=Phyra80215;Parent=Phyra80215;rank=3 scaffold_47 . exon 101688 102042 . - . ID=Phyra80215.3;Parent=Phyra80215;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_47 . CDS 102118 102922 . - 0 ID=Phyra80215;Parent=Phyra80215;rank=2 scaffold_47 . exon 102118 102922 . - . ID=Phyra80215.2;Parent=Phyra80215;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . CDS 103097 103213 . - 0 ID=Phyra80215;Parent=Phyra80215;rank=1 scaffold_47 . exon 103097 103213 . - . ID=Phyra80215.1;Parent=Phyra80215;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 104573 105250 . - . ID=Phyra80216;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000038;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 104573 105250 . - . ID=Phyra80216;Parent=Phyra80216;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 104573 105250 . - 0 ID=Phyra80216;Parent=Phyra80216;rank=1 scaffold_47 . exon 104573 105250 . - . ID=Phyra80216.1;Parent=Phyra80216;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 106948 107619 . + . ID=Phyra80217;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000039;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 106948 107619 . + . ID=Phyra80217;Parent=Phyra80217;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 106948 107619 . + 0 ID=Phyra80217;Parent=Phyra80217;rank=1 scaffold_47 . exon 106948 107619 . + . ID=Phyra80217.1;Parent=Phyra80217;constitutive=1;rank=1 scaffold_47 . repeat_region 109340 110126 . ? . description=trf scaffold_47 . repeat_region 109361 110135 . ? . description=trf scaffold_47 . repeat_region 110212 110373 . ? . description=trf scaffold_47 . repeat_region 110217 110269 . ? . description=trf scaffold_47 . repeat_region 110227 110371 . ? . description=trf scaffold_47 . repeat_region 110253 110371 . ? . description=trf scaffold_47 . repeat_region 110428 110546 . ? . description=trf scaffold_47 . repeat_region 112152 112474 . ? . description=trf scaffold_47 . repeat_region 113237 115649 . - . description=Gypsy-2-I_PI-int scaffold_47 . repeat_region 113973 114008 . ? . description=trf scaffold_47 ensembl protein_coding_gene 108848 110567 . + . ID=Phyra80218;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000040;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 108848 110567 . + . ID=Phyra80218;Parent=Phyra80218;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 108848 109243 . + 0 ID=Phyra80218;Parent=Phyra80218;rank=1 scaffold_47 . exon 108848 109243 . + . ID=Phyra80218.1;Parent=Phyra80218;constitutive=1;rank=1 scaffold_47 . CDS 109303 109534 . + 0 ID=Phyra80218;Parent=Phyra80218;rank=2 scaffold_47 . exon 109303 109534 . + . ID=Phyra80218.2;Parent=Phyra80218;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . CDS 109679 110117 . + 0 ID=Phyra80218;Parent=Phyra80218;rank=3 scaffold_47 . exon 109679 110117 . + . ID=Phyra80218.3;Parent=Phyra80218;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_47 . CDS 110227 110361 . + 0 ID=Phyra80218;Parent=Phyra80218;rank=4 scaffold_47 . exon 110227 110361 . + . ID=Phyra80218.4;Parent=Phyra80218;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_47 . CDS 110402 110567 . + 0 ID=Phyra80218;Parent=Phyra80218;rank=5 scaffold_47 . exon 110402 110567 . + . ID=Phyra80218.5;Parent=Phyra80218;constitutive=1;ensembl_phase=2;rank=5 scaffold_47 ensembl protein_coding_gene 116365 117361 . + . ID=Phyra80219;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000041;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 116365 117361 . + . ID=Phyra80219;Parent=Phyra80219;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 116365 116631 . + 0 ID=Phyra80219;Parent=Phyra80219;rank=1 scaffold_47 . exon 116365 116631 . + . ID=Phyra80219.1;Parent=Phyra80219;constitutive=1;rank=1 scaffold_47 . CDS 116714 116841 . + 0 ID=Phyra80219;Parent=Phyra80219;rank=2 scaffold_47 . exon 116714 116841 . + . ID=Phyra80219.2;Parent=Phyra80219;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_47 . CDS 116909 117177 . + 0 ID=Phyra80219;Parent=Phyra80219;rank=3 scaffold_47 . exon 116909 117177 . + . ID=Phyra80219.3;Parent=Phyra80219;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_47 . CDS 117261 117361 . + 0 ID=Phyra80219;Parent=Phyra80219;rank=4 scaffold_47 . exon 117261 117361 . + . ID=Phyra80219.4;Parent=Phyra80219;constitutive=1;ensembl_phase=1;rank=4 scaffold_47 ensembl protein_coding_gene 117817 119170 . + . ID=Phyra80220;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000042;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 117817 119170 . + . ID=Phyra80220;Parent=Phyra80220;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 117817 118696 . + 0 ID=Phyra80220;Parent=Phyra80220;rank=1 scaffold_47 . exon 117817 118696 . + . ID=Phyra80220.1;Parent=Phyra80220;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 118751 118768 . + 0 ID=Phyra80220;Parent=Phyra80220;rank=2 scaffold_47 . CDS 118793 118832 . + 0 ID=Phyra80220;Parent=Phyra80220;rank=3 scaffold_47 . CDS 119128 119170 . + 0 ID=Phyra80220;Parent=Phyra80220;rank=4 scaffold_47 . repeat_region 118920 118986 . ? . description=dust scaffold_47 . repeat_region 119702 119718 . ? . description=dust scaffold_47 . repeat_region 119733 122095 . ? . description=dust scaffold_47 . repeat_region 122789 122796 . ? . description=dust scaffold_47 . repeat_region 123478 123642 . - . description=Gypsy-1-LTR_PI scaffold_47 . repeat_region 124164 124532 . ? . description=dust scaffold_47 . repeat_region 124534 124548 . ? . description=dust scaffold_47 . repeat_region 124564 125947 . - . description=Gypsy-1-I_PI-int scaffold_47 . repeat_region 126378 128547 . - . description=Gypsy-1-I_PI-int scaffold_47 . exon 118751 118768 . + . ID=Phyra80220.2;Parent=Phyra80220;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_47 . exon 118793 118832 . + . ID=Phyra80220.3;Parent=Phyra80220;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_47 . exon 119128 119170 . + . ID=Phyra80220.4;Parent=Phyra80220;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 . biological_region 131770 131773 0.999 - . logic_name=eponine scaffold_47 . repeat_region 132580 132632 . ? . description=trf scaffold_47 . repeat_region 132589 132635 . ? . description=trf scaffold_47 . repeat_region 132602 132657 . ? . description=trf scaffold_47 . biological_region 134405 134407 0.999 + . logic_name=eponine scaffold_47 . biological_region 134813 134817 0.999 + . logic_name=eponine scaffold_47 . biological_region 135429 135432 0.999 + . logic_name=eponine scaffold_47 . biological_region 135499 135500 0.999 - . logic_name=eponine scaffold_47 . biological_region 137230 137231 0.999 - . logic_name=eponine scaffold_47 . biological_region 137311 137313 0.999 - . logic_name=eponine scaffold_47 ensembl protein_coding_gene 132161 133218 . + . ID=Phyra95625;biotype=protein_coding;external_name=C_scaffold_47000012;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 132161 133218 . + . ID=Phyra95625;Parent=Phyra95625;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 132161 132221 . + 0 ID=Phyra95625;Parent=Phyra95625;rank=1 scaffold_47 . exon 132161 132221 . + . ID=Phyra95625.1;Parent=Phyra95625;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 132293 132715 . + 0 ID=Phyra95625;Parent=Phyra95625;rank=2 scaffold_47 . exon 132293 132715 . + . ID=Phyra95625.2;Parent=Phyra95625;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 132779 133218 . + 0 ID=Phyra95625;Parent=Phyra95625;rank=3 scaffold_47 . exon 132779 133218 . + . ID=Phyra95625.3;Parent=Phyra95625;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 ensembl protein_coding_gene 133850 134935 . - . ID=Phyra95626;biotype=protein_coding;external_name=C_scaffold_47000013;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 133850 134935 . - . ID=Phyra95626;Parent=Phyra95626;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 133850 134935 . - 0 ID=Phyra95626;Parent=Phyra95626;rank=1 scaffold_47 . exon 133850 134935 . - . ID=Phyra95626.1;Parent=Phyra95626;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 135253 138239 . - . ID=Phyra95627;biotype=protein_coding;external_name=C_scaffold_47000014;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 135253 138239 . - . ID=Phyra95627;Parent=Phyra95627;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 135253 135367 . - 0 ID=Phyra95627;Parent=Phyra95627;rank=12 scaffold_47 . exon 135253 135367 . - . ID=Phyra95627.12;Parent=Phyra95627;constitutive=1;ensembl_phase=2;rank=12 scaffold_47 . CDS 135445 135594 . - 0 ID=Phyra95627;Parent=Phyra95627;rank=11 scaffold_47 . exon 135445 135594 . - . ID=Phyra95627.11;Parent=Phyra95627;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_47 . CDS 135672 135748 . - 0 ID=Phyra95627;Parent=Phyra95627;rank=10 scaffold_47 . exon 135672 135748 . - . ID=Phyra95627.10;Parent=Phyra95627;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_47 . CDS 135812 135898 . - 0 ID=Phyra95627;Parent=Phyra95627;rank=9 scaffold_47 . exon 135812 135898 . - . ID=Phyra95627.9;Parent=Phyra95627;constitutive=1;rank=9 scaffold_47 . CDS 135966 136176 . - 0 ID=Phyra95627;Parent=Phyra95627;rank=8 scaffold_47 . exon 135966 136176 . - . ID=Phyra95627.8;Parent=Phyra95627;constitutive=1;ensembl_phase=2;rank=8 scaffold_47 . CDS 136254 136363 . - 0 ID=Phyra95627;Parent=Phyra95627;rank=7 scaffold_47 . exon 136254 136363 . - . ID=Phyra95627.7;Parent=Phyra95627;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_47 . CDS 136432 136609 . - 0 ID=Phyra95627;Parent=Phyra95627;rank=6 scaffold_47 . exon 136432 136609 . - . ID=Phyra95627.6;Parent=Phyra95627;constitutive=1;ensembl_phase=2;rank=6 scaffold_47 . CDS 136698 136999 . - 0 ID=Phyra95627;Parent=Phyra95627;rank=5 scaffold_47 . exon 136698 136999 . - . ID=Phyra95627.5;Parent=Phyra95627;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_47 . CDS 137048 137402 . - 0 ID=Phyra95627;Parent=Phyra95627;rank=4 scaffold_47 . exon 137048 137402 . - . ID=Phyra95627.4;Parent=Phyra95627;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 . CDS 137568 137773 . - 0 ID=Phyra95627;Parent=Phyra95627;rank=3 scaffold_47 . exon 137568 137773 . - . ID=Phyra95627.3;Parent=Phyra95627;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_47 . CDS 137845 138115 . - 0 ID=Phyra95627;Parent=Phyra95627;rank=2 scaffold_47 . exon 137845 138115 . - . ID=Phyra95627.2;Parent=Phyra95627;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 138190 138239 . - 0 ID=Phyra95627;Parent=Phyra95627;rank=1 scaffold_47 . exon 138190 138239 . - . ID=Phyra95627.1;Parent=Phyra95627;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 ensembl protein_coding_gene 139775 143229 . - . ID=Phyra95628;biotype=protein_coding;external_name=C_scaffold_47000015;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 139775 143229 . - . ID=Phyra95628;Parent=Phyra95628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 139775 139845 . - 0 ID=Phyra95628;Parent=Phyra95628;rank=12 scaffold_47 . exon 139775 139845 . - . ID=Phyra95628.12;Parent=Phyra95628;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_47 . CDS 139954 140009 . - 0 ID=Phyra95628;Parent=Phyra95628;rank=11 scaffold_47 . exon 139954 140009 . - . ID=Phyra95628.11;Parent=Phyra95628;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_47 . CDS 140060 140093 . - 0 ID=Phyra95628;Parent=Phyra95628;rank=10 scaffold_47 . exon 140060 140093 . - . ID=Phyra95628.10;Parent=Phyra95628;constitutive=1;ensembl_phase=2;rank=10 scaffold_47 . CDS 140169 140284 . - 0 ID=Phyra95628;Parent=Phyra95628;rank=9 scaffold_47 . exon 140169 140284 . - . ID=Phyra95628.9;Parent=Phyra95628;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_47 . CDS 140353 140442 . - 0 ID=Phyra95628;Parent=Phyra95628;rank=8 scaffold_47 . exon 140353 140442 . - . ID=Phyra95628.8;Parent=Phyra95628;constitutive=1;rank=8 scaffold_47 . CDS 140731 140992 . - 0 ID=Phyra95628;Parent=Phyra95628;rank=7 scaffold_47 . exon 140731 140992 . - . ID=Phyra95628.7;Parent=Phyra95628;constitutive=1;ensembl_phase=2;rank=7 scaffold_47 . CDS 141056 141150 . - 0 ID=Phyra95628;Parent=Phyra95628;rank=6 scaffold_47 . exon 141056 141150 . - . ID=Phyra95628.6;Parent=Phyra95628;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_47 . CDS 141208 141331 . - 0 ID=Phyra95628;Parent=Phyra95628;rank=5 scaffold_47 . exon 141208 141331 . - . ID=Phyra95628.5;Parent=Phyra95628;constitutive=1;ensembl_phase=2;rank=5 scaffold_47 . CDS 141962 142434 . - 0 ID=Phyra95628;Parent=Phyra95628;rank=4 scaffold_47 . exon 141962 142434 . - . ID=Phyra95628.4;Parent=Phyra95628;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_47 . CDS 142508 142744 . - 0 ID=Phyra95628;Parent=Phyra95628;rank=3 scaffold_47 . exon 142508 142744 . - . ID=Phyra95628.3;Parent=Phyra95628;constitutive=1;rank=3 scaffold_47 . CDS 142816 142893 . - 0 ID=Phyra95628;Parent=Phyra95628;rank=2 scaffold_47 . exon 142816 142893 . - . ID=Phyra95628.2;Parent=Phyra95628;constitutive=1;rank=2 scaffold_47 . CDS 142960 143229 . - 0 ID=Phyra95628;Parent=Phyra95628;rank=1 scaffold_47 . exon 142960 143229 . - . ID=Phyra95628.1;Parent=Phyra95628;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 143400 146267 . + . ID=Phyra95631;biotype=protein_coding;external_name=C_scaffold_47000018;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 143400 146267 . + . ID=Phyra95631;Parent=Phyra95631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 143400 143789 . + 0 ID=Phyra95631;Parent=Phyra95631;rank=1 scaffold_47 . exon 143400 143789 . + . ID=Phyra95631.1;Parent=Phyra95631;constitutive=1;rank=1 scaffold_47 . CDS 143852 143958 . + 0 ID=Phyra95631;Parent=Phyra95631;rank=2 scaffold_47 . exon 143852 143958 . + . ID=Phyra95631.2;Parent=Phyra95631;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_47 . CDS 144358 144796 . + 0 ID=Phyra95631;Parent=Phyra95631;rank=3 scaffold_47 . exon 144358 144796 . + . ID=Phyra95631.3;Parent=Phyra95631;constitutive=1;ensembl_phase=2;rank=3 scaffold_47 . CDS 144845 145079 . + 0 ID=Phyra95631;Parent=Phyra95631;rank=4 scaffold_47 . exon 144845 145079 . + . ID=Phyra95631.4;Parent=Phyra95631;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_47 . CDS 145404 145523 . + 0 ID=Phyra95631;Parent=Phyra95631;rank=5 scaffold_47 . exon 145404 145523 . + . ID=Phyra95631.5;Parent=Phyra95631;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_47 . CDS 145680 145969 . + 0 ID=Phyra95631;Parent=Phyra95631;rank=6 scaffold_47 . exon 145680 145969 . + . ID=Phyra95631.6;Parent=Phyra95631;constitutive=1;ensembl_phase=1;rank=6 scaffold_47 . CDS 146063 146267 . + 0 ID=Phyra95631;Parent=Phyra95631;rank=7 scaffold_47 . exon 146063 146267 . + . ID=Phyra95631.7;Parent=Phyra95631;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_47 . repeat_region 150878 150885 . ? . description=dust scaffold_47 . biological_region 155084 155087 0.999 + . logic_name=eponine scaffold_47 . biological_region 155396 155402 0.999 + . logic_name=eponine scaffold_47 . biological_region 155494 155495 0.999 - . logic_name=eponine scaffold_47 . biological_region 157160 157161 0.999 + . logic_name=eponine scaffold_47 ensembl protein_coding_gene 156494 158395 . - . ID=Phyra71782;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_47000003;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 156494 158395 . - . ID=Phyra71782;Parent=Phyra71782;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 156494 158395 . - 0 ID=Phyra71782;Parent=Phyra71782;rank=1 scaffold_47 . exon 156494 158395 . - . ID=Phyra71782.1;Parent=Phyra71782;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 151028 152445 . - . ID=Phyra95632;biotype=protein_coding;external_name=C_scaffold_47000019;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 151028 152445 . - . ID=Phyra95632;Parent=Phyra95632;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 151028 151306 . - 0 ID=Phyra95632;Parent=Phyra95632;rank=3 scaffold_47 . exon 151028 151306 . - . ID=Phyra95632.3;Parent=Phyra95632;constitutive=1;rank=3 scaffold_47 . CDS 151499 151817 . - 0 ID=Phyra95632;Parent=Phyra95632;rank=2 scaffold_47 . exon 151499 151817 . - . ID=Phyra95632.2;Parent=Phyra95632;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 152117 152445 . - 0 ID=Phyra95632;Parent=Phyra95632;rank=1 scaffold_47 . exon 152117 152445 . - . ID=Phyra95632.1;Parent=Phyra95632;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 ensembl protein_coding_gene 153751 155226 . - . ID=Phyra95633;biotype=protein_coding;external_name=C_scaffold_47000020;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 153751 155226 . - . ID=Phyra95633;Parent=Phyra95633;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 153751 154181 . - 0 ID=Phyra95633;Parent=Phyra95633;rank=3 scaffold_47 . exon 153751 154181 . - . ID=Phyra95633.3;Parent=Phyra95633;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 154233 154356 . - 0 ID=Phyra95633;Parent=Phyra95633;rank=2 scaffold_47 . exon 154233 154356 . - . ID=Phyra95633.2;Parent=Phyra95633;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . CDS 154603 155226 . - 0 ID=Phyra95633;Parent=Phyra95633;rank=1 scaffold_47 . exon 154603 155226 . - . ID=Phyra95633.1;Parent=Phyra95633;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 155619 156262 . + . ID=Phyra95634;biotype=protein_coding;external_name=C_scaffold_47000021;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 155619 156262 . + . ID=Phyra95634;Parent=Phyra95634;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 155619 155820 . + 0 ID=Phyra95634;Parent=Phyra95634;rank=1 scaffold_47 . exon 155619 155820 . + . ID=Phyra95634.1;Parent=Phyra95634;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 155890 155992 . + 0 ID=Phyra95634;Parent=Phyra95634;rank=2 scaffold_47 . exon 155890 155992 . + . ID=Phyra95634.2;Parent=Phyra95634;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_47 . CDS 156064 156262 . + 0 ID=Phyra95634;Parent=Phyra95634;rank=3 scaffold_47 . exon 156064 156262 . + . ID=Phyra95634.3;Parent=Phyra95634;constitutive=1;ensembl_phase=2;rank=3 scaffold_47 . repeat_region 158475 158522 . ? . description=trf scaffold_47 ensembl protein_coding_gene 163900 165993 . + . ID=Phyra80231;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000053;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 163900 165993 . + . ID=Phyra80231;Parent=Phyra80231;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 163900 165993 . + 0 ID=Phyra80231;Parent=Phyra80231;rank=1 scaffold_47 . exon 163900 165993 . + . ID=Phyra80231.1;Parent=Phyra80231;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 166179 166952 . - . ID=Phyra80232;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000054;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 166179 166952 . - . ID=Phyra80232;Parent=Phyra80232;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 166179 166952 . - 0 ID=Phyra80232;Parent=Phyra80232;rank=1 scaffold_47 . exon 166179 166952 . - . ID=Phyra80232.1;Parent=Phyra80232;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 167359 167883 . + . ID=Phyra80233;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000055;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 167359 167883 . + . ID=Phyra80233;Parent=Phyra80233;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 167359 167883 . + 0 ID=Phyra80233;Parent=Phyra80233;rank=1 scaffold_47 . exon 167359 167883 . + . ID=Phyra80233.1;Parent=Phyra80233;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 158578 161958 . + . ID=Phyra95635;biotype=protein_coding;external_name=C_scaffold_47000022;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 158578 161958 . + . ID=Phyra95635;Parent=Phyra95635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 158578 158915 . + 0 ID=Phyra95635;Parent=Phyra95635;rank=1 scaffold_47 . exon 158578 158915 . + . ID=Phyra95635.1;Parent=Phyra95635;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 158964 159263 . + 0 ID=Phyra95635;Parent=Phyra95635;rank=2 scaffold_47 . exon 158964 159263 . + . ID=Phyra95635.2;Parent=Phyra95635;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_47 . CDS 159588 159666 . + 0 ID=Phyra95635;Parent=Phyra95635;rank=3 scaffold_47 . exon 159588 159666 . + . ID=Phyra95635.3;Parent=Phyra95635;constitutive=1;ensembl_phase=2;rank=3 scaffold_47 . CDS 159724 160054 . + 0 ID=Phyra95635;Parent=Phyra95635;rank=4 scaffold_47 . exon 159724 160054 . + . ID=Phyra95635.4;Parent=Phyra95635;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_47 . CDS 160115 161958 . + 0 ID=Phyra95635;Parent=Phyra95635;rank=5 scaffold_47 . exon 160115 161958 . + . ID=Phyra95635.5;Parent=Phyra95635;constitutive=1;ensembl_phase=1;rank=5 scaffold_47 . biological_region 168746 168751 0.999 + . logic_name=eponine scaffold_47 ensembl protein_coding_gene 170599 171972 . + . ID=Phyra80234;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000056;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 170599 171972 . + . ID=Phyra80234;Parent=Phyra80234;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 170599 171972 . + 0 ID=Phyra80234;Parent=Phyra80234;rank=1 scaffold_47 . exon 170599 171972 . + . ID=Phyra80234.1;Parent=Phyra80234;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 172120 176215 . + . ID=Phyra80235;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000057;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 172120 176215 . + . ID=Phyra80235;Parent=Phyra80235;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 172120 172299 . + 0 ID=Phyra80235;Parent=Phyra80235;rank=1 scaffold_47 . exon 172120 172299 . + . ID=Phyra80235.1;Parent=Phyra80235;constitutive=1;rank=1 scaffold_47 . CDS 172386 172535 . + 0 ID=Phyra80235;Parent=Phyra80235;rank=2 scaffold_47 . exon 172386 172535 . + . ID=Phyra80235.2;Parent=Phyra80235;constitutive=1;rank=2 scaffold_47 . CDS 172596 172947 . + 0 ID=Phyra80235;Parent=Phyra80235;rank=3 scaffold_47 . exon 172596 172947 . + . ID=Phyra80235.3;Parent=Phyra80235;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_47 . CDS 173008 173186 . + 0 ID=Phyra80235;Parent=Phyra80235;rank=4 scaffold_47 . exon 173008 173186 . + . ID=Phyra80235.4;Parent=Phyra80235;constitutive=1;ensembl_phase=1;rank=4 scaffold_47 . CDS 173250 174299 . + 0 ID=Phyra80235;Parent=Phyra80235;rank=5 scaffold_47 . exon 173250 174299 . + . ID=Phyra80235.5;Parent=Phyra80235;constitutive=1;rank=5 scaffold_47 . CDS 174395 174529 . + 0 ID=Phyra80235;Parent=Phyra80235;rank=6 scaffold_47 . exon 174395 174529 . + . ID=Phyra80235.6;Parent=Phyra80235;constitutive=1;rank=6 scaffold_47 . CDS 174605 176215 . + 0 ID=Phyra80235;Parent=Phyra80235;rank=7 scaffold_47 . exon 174605 176215 . + . ID=Phyra80235.7;Parent=Phyra80235;constitutive=1;rank=7 scaffold_47 ensembl protein_coding_gene 176384 180049 . - . ID=Phyra80236;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000058;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 176384 180049 . - . ID=Phyra80236;Parent=Phyra80236;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 176384 180049 . - 0 ID=Phyra80236;Parent=Phyra80236;rank=1 scaffold_47 . exon 176384 180049 . - . ID=Phyra80236.1;Parent=Phyra80236;constitutive=1;rank=1 scaffold_47 . repeat_region 179702 179749 . ? . description=trf scaffold_47 ensembl protein_coding_gene 183746 184555 . + . ID=Phyra80239;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000061;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 183746 184555 . + . ID=Phyra80239;Parent=Phyra80239;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 183746 184555 . + 0 ID=Phyra80239;Parent=Phyra80239;rank=1 scaffold_47 . exon 183746 184555 . + . ID=Phyra80239.1;Parent=Phyra80239;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 184908 185771 . - . ID=Phyra80240;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000062;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 184908 185771 . - . ID=Phyra80240;Parent=Phyra80240;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 184908 185771 . - 0 ID=Phyra80240;Parent=Phyra80240;rank=1 scaffold_47 . exon 184908 185771 . - . ID=Phyra80240.1;Parent=Phyra80240;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 186958 187734 . - . ID=Phyra80241;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000063;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 186958 187734 . - . ID=Phyra80241;Parent=Phyra80241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 186958 187734 . - 0 ID=Phyra80241;Parent=Phyra80241;rank=1 scaffold_47 . exon 186958 187734 . - . ID=Phyra80241.1;Parent=Phyra80241;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 180399 183442 . + . ID=Phyra95636;biotype=protein_coding;external_name=C_scaffold_47000023;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 180399 183442 . + . ID=Phyra95636;Parent=Phyra95636;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 180399 180496 . + 0 ID=Phyra95636;Parent=Phyra95636;rank=1 scaffold_47 . exon 180399 180496 . + . ID=Phyra95636.1;Parent=Phyra95636;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 180707 181124 . + 0 ID=Phyra95636;Parent=Phyra95636;rank=2 scaffold_47 . exon 180707 181124 . + . ID=Phyra95636.2;Parent=Phyra95636;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 181182 181378 . + 0 ID=Phyra95636;Parent=Phyra95636;rank=3 scaffold_47 . exon 181182 181378 . + . ID=Phyra95636.3;Parent=Phyra95636;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_47 . CDS 181605 181757 . + 0 ID=Phyra95636;Parent=Phyra95636;rank=4 scaffold_47 . exon 181605 181757 . + . ID=Phyra95636.4;Parent=Phyra95636;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_47 . CDS 181854 182110 . + 0 ID=Phyra95636;Parent=Phyra95636;rank=5 scaffold_47 . exon 181854 182110 . + . ID=Phyra95636.5;Parent=Phyra95636;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_47 . CDS 182147 182540 . + 0 ID=Phyra95636;Parent=Phyra95636;rank=6 scaffold_47 . exon 182147 182540 . + . ID=Phyra95636.6;Parent=Phyra95636;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_47 . CDS 182800 183442 . + 0 ID=Phyra95636;Parent=Phyra95636;rank=7 scaffold_47 . exon 182800 183442 . + . ID=Phyra95636.7;Parent=Phyra95636;constitutive=1;ensembl_phase=2;rank=7 scaffold_47 . biological_region 190514 190516 0.999 + . logic_name=eponine scaffold_47 . biological_region 190519 190519 0.999 - . logic_name=eponine scaffold_47 . biological_region 190607 190607 0.999 - . logic_name=eponine scaffold_47 . biological_region 192951 192952 0.999 + . logic_name=eponine scaffold_47 . biological_region 192995 192997 0.999 + . logic_name=eponine scaffold_47 . biological_region 193806 193812 0.999 - . logic_name=eponine scaffold_47 . biological_region 193976 193976 0.999 - . logic_name=eponine scaffold_47 . biological_region 194508 194509 0.999 + . logic_name=eponine scaffold_47 . biological_region 194714 194718 0.999 - . logic_name=eponine scaffold_47 . biological_region 194858 194864 0.999 + . logic_name=eponine scaffold_47 . biological_region 194892 194894 0.999 - . logic_name=eponine scaffold_47 . repeat_region 196735 196743 . ? . description=dust scaffold_47 ensembl gene 197644 197922 . + . ID=EPrPRAG00000000026;biotype=MRP_RNA;description=RNase MRP [Source:RFAM%3BAcc:RF00030];external_name=RNase_MRP;logic_name=ncrna_eg scaffold_47 ensembl transcript 197644 197922 . + . ID=EPrPRAT00000000026;Parent=EPrPRAG00000000026;biotype=MRP_RNA;logic_name=ncrna_eg scaffold_47 ensembl snoRNA_gene 197263 197376 . - . ID=EPrPRAG00000000201;biotype=snoRNA;description=Small nucleolar RNA SNORD14 [Source:RFAM%3BAcc:RF00016];external_name=SNORD14;logic_name=ncrna_eg scaffold_47 ensembl snoRNA 197263 197376 . - . ID=EPrPRAT00000000201;Parent=EPrPRAG00000000201;biotype=snoRNA;logic_name=ncrna_eg scaffold_47 . exon 197644 197922 . + . ID=EPrPRAE00000000026;Parent=EPrPRAT00000000026;constitutive=1;rank=1 scaffold_47 . exon 197263 197376 . - . ID=EPrPRAE00000000201;Parent=EPrPRAT00000000201;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 194367 195836 . - . ID=Phyra71783;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_47000004;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 194367 195836 . - . ID=Phyra71783;Parent=Phyra71783;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 194367 195836 . - 0 ID=Phyra71783;Parent=Phyra71783;rank=1 scaffold_47 . exon 194367 195836 . - . ID=Phyra71783.1;Parent=Phyra71783;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 188768 189514 . - . ID=Phyra80242;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000064;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 188768 189514 . - . ID=Phyra80242;Parent=Phyra80242;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 188768 189514 . - 0 ID=Phyra80242;Parent=Phyra80242;rank=1 scaffold_47 . exon 188768 189514 . - . ID=Phyra80242.1;Parent=Phyra80242;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 190015 194208 . + . ID=Phyra80243;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000065;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 190015 194208 . + . ID=Phyra80243;Parent=Phyra80243;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 190015 190048 . + 0 ID=Phyra80243;Parent=Phyra80243;rank=1 scaffold_47 . exon 190015 190048 . + . ID=Phyra80243.1;Parent=Phyra80243;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 190091 190257 . + 0 ID=Phyra80243;Parent=Phyra80243;rank=2 scaffold_47 . exon 190091 190257 . + . ID=Phyra80243.2;Parent=Phyra80243;constitutive=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 190433 192637 . + 0 ID=Phyra80243;Parent=Phyra80243;rank=3 scaffold_47 . exon 190433 192637 . + . ID=Phyra80243.3;Parent=Phyra80243;constitutive=1;rank=3 scaffold_47 . CDS 192722 192814 . + 0 ID=Phyra80243;Parent=Phyra80243;rank=4 scaffold_47 . exon 192722 192814 . + . ID=Phyra80243.4;Parent=Phyra80243;constitutive=1;rank=4 scaffold_47 . CDS 192882 193322 . + 0 ID=Phyra80243;Parent=Phyra80243;rank=5 scaffold_47 . exon 192882 193322 . + . ID=Phyra80243.5;Parent=Phyra80243;constitutive=1;rank=5 scaffold_47 . CDS 193399 194208 . + 0 ID=Phyra80243;Parent=Phyra80243;rank=6 scaffold_47 . exon 193399 194208 . + . ID=Phyra80243.6;Parent=Phyra80243;constitutive=1;rank=6 scaffold_47 . repeat_region 204410 204451 . ? . description=trf scaffold_47 . repeat_region 206538 206577 . ? . description=trf scaffold_47 ensembl snoRNA_gene 198039 198152 . + . ID=EPrPRAG00000000157;biotype=snoRNA;description=Small nucleolar RNA SNORD14 [Source:RFAM%3BAcc:RF00016];external_name=SNORD14;logic_name=ncrna_eg scaffold_47 ensembl snoRNA 198039 198152 . + . ID=EPrPRAT00000000157;Parent=EPrPRAG00000000157;biotype=snoRNA;logic_name=ncrna_eg scaffold_47 . exon 198039 198152 . + . ID=EPrPRAE00000000157;Parent=EPrPRAT00000000157;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 198437 201209 . + . ID=Phyra80245;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000067;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 198437 201209 . + . ID=Phyra80245;Parent=Phyra80245;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 198437 198935 . + 0 ID=Phyra80245;Parent=Phyra80245;rank=1 scaffold_47 . exon 198437 198935 . + . ID=Phyra80245.1;Parent=Phyra80245;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 198997 199113 . + 0 ID=Phyra80245;Parent=Phyra80245;rank=2 scaffold_47 . exon 198997 199113 . + . ID=Phyra80245.2;Parent=Phyra80245;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 199249 201209 . + 0 ID=Phyra80245;Parent=Phyra80245;rank=3 scaffold_47 . exon 199249 201209 . + . ID=Phyra80245.3;Parent=Phyra80245;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 ensembl protein_coding_gene 201356 204644 . - . ID=Phyra80246;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000068;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 201356 204644 . - . ID=Phyra80246;Parent=Phyra80246;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 201356 204386 . - 0 ID=Phyra80246;Parent=Phyra80246;rank=2 scaffold_47 . exon 201356 204386 . - . ID=Phyra80246.2;Parent=Phyra80246;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 204475 204644 . - 0 ID=Phyra80246;Parent=Phyra80246;rank=1 scaffold_47 . exon 204475 204644 . - . ID=Phyra80246.1;Parent=Phyra80246;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 ensembl protein_coding_gene 205539 206123 . + . ID=Phyra80247;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000069;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 205539 206123 . + . ID=Phyra80247;Parent=Phyra80247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 205539 206123 . + 0 ID=Phyra80247;Parent=Phyra80247;rank=1 scaffold_47 . exon 205539 206123 . + . ID=Phyra80247.1;Parent=Phyra80247;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 207192 208856 . + . ID=Phyra80248;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000070;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 207192 208856 . + . ID=Phyra80248;Parent=Phyra80248;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 207192 207233 . + 0 ID=Phyra80248;Parent=Phyra80248;rank=1 scaffold_47 . exon 207192 207233 . + . ID=Phyra80248.1;Parent=Phyra80248;constitutive=1;rank=1 scaffold_47 . CDS 207297 208856 . + 0 ID=Phyra80248;Parent=Phyra80248;rank=2 scaffold_47 . exon 207297 208856 . + . ID=Phyra80248.2;Parent=Phyra80248;constitutive=1;rank=2 scaffold_47 . repeat_region 214862 214870 . ? . description=dust scaffold_47 ensembl protein_coding_gene 208997 212017 . - . ID=Phyra80249;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000071;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 208997 212017 . - . ID=Phyra80249;Parent=Phyra80249;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 208997 209224 . - 0 ID=Phyra80249;Parent=Phyra80249;rank=5 scaffold_47 . exon 208997 209224 . - . ID=Phyra80249.5;Parent=Phyra80249;constitutive=1;rank=5 scaffold_47 . CDS 209295 209387 . - 0 ID=Phyra80249;Parent=Phyra80249;rank=4 scaffold_47 . exon 209295 209387 . - . ID=Phyra80249.4;Parent=Phyra80249;constitutive=1;rank=4 scaffold_47 . CDS 209774 211386 . - 0 ID=Phyra80249;Parent=Phyra80249;rank=3 scaffold_47 . exon 209774 211386 . - . ID=Phyra80249.3;Parent=Phyra80249;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 211469 211799 . - 0 ID=Phyra80249;Parent=Phyra80249;rank=2 scaffold_47 . exon 211469 211799 . - . ID=Phyra80249.2;Parent=Phyra80249;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . CDS 211868 212017 . - 0 ID=Phyra80249;Parent=Phyra80249;rank=1 scaffold_47 . exon 211868 212017 . - . ID=Phyra80249.1;Parent=Phyra80249;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 212397 214270 . + . ID=Phyra95639;biotype=protein_coding;external_name=C_scaffold_47000026;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 212397 214270 . + . ID=Phyra95639;Parent=Phyra95639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 212397 212678 . + 0 ID=Phyra95639;Parent=Phyra95639;rank=1 scaffold_47 . exon 212397 212678 . + . ID=Phyra95639.1;Parent=Phyra95639;constitutive=1;rank=1 scaffold_47 . CDS 212752 212932 . + 0 ID=Phyra95639;Parent=Phyra95639;rank=2 scaffold_47 . exon 212752 212932 . + . ID=Phyra95639.2;Parent=Phyra95639;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . CDS 213050 213070 . + 0 ID=Phyra95639;Parent=Phyra95639;rank=3 scaffold_47 . exon 213050 213070 . + . ID=Phyra95639.3;Parent=Phyra95639;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 213136 213213 . + 0 ID=Phyra95639;Parent=Phyra95639;rank=4 scaffold_47 . exon 213136 213213 . + . ID=Phyra95639.4;Parent=Phyra95639;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_47 . CDS 213287 213486 . + 0 ID=Phyra95639;Parent=Phyra95639;rank=5 scaffold_47 . exon 213287 213486 . + . ID=Phyra95639.5;Parent=Phyra95639;constitutive=1;ensembl_phase=1;rank=5 scaffold_47 . CDS 213556 213591 . + 0 ID=Phyra95639;Parent=Phyra95639;rank=6 scaffold_47 . exon 213556 213591 . + . ID=Phyra95639.6;Parent=Phyra95639;constitutive=1;rank=6 scaffold_47 . CDS 213681 213806 . + 0 ID=Phyra95639;Parent=Phyra95639;rank=7 scaffold_47 . exon 213681 213806 . + . ID=Phyra95639.7;Parent=Phyra95639;constitutive=1;rank=7 scaffold_47 . CDS 213881 214077 . + 0 ID=Phyra95639;Parent=Phyra95639;rank=8 scaffold_47 . exon 213881 214077 . + . ID=Phyra95639.8;Parent=Phyra95639;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_47 . CDS 214165 214270 . + 0 ID=Phyra95639;Parent=Phyra95639;rank=9 scaffold_47 . exon 214165 214270 . + . ID=Phyra95639.9;Parent=Phyra95639;constitutive=1;ensembl_phase=2;rank=9 scaffold_47 ensembl protein_coding_gene 215364 216733 . + . ID=Phyra95640;biotype=protein_coding;external_name=C_scaffold_47000027;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 215364 216733 . + . ID=Phyra95640;Parent=Phyra95640;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 215364 215498 . + 0 ID=Phyra95640;Parent=Phyra95640;rank=1 scaffold_47 . exon 215364 215498 . + . ID=Phyra95640.1;Parent=Phyra95640;constitutive=1;rank=1 scaffold_47 . CDS 215575 215909 . + 0 ID=Phyra95640;Parent=Phyra95640;rank=2 scaffold_47 . exon 215575 215909 . + . ID=Phyra95640.2;Parent=Phyra95640;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_47 . CDS 215979 216039 . + 0 ID=Phyra95640;Parent=Phyra95640;rank=3 scaffold_47 . exon 215979 216039 . + . ID=Phyra95640.3;Parent=Phyra95640;constitutive=1;ensembl_phase=2;rank=3 scaffold_47 . CDS 216583 216733 . + 0 ID=Phyra95640;Parent=Phyra95640;rank=4 scaffold_47 . exon 216583 216733 . + . ID=Phyra95640.4;Parent=Phyra95640;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_47 . biological_region 219098 219102 0.999 + . logic_name=eponine scaffold_47 . biological_region 219149 219152 0.999 - . logic_name=eponine scaffold_47 . repeat_region 220968 220997 . ? . description=trf scaffold_47 . biological_region 222359 222362 0.999 + . logic_name=eponine scaffold_47 . biological_region 222395 222395 0.999 + . logic_name=eponine scaffold_47 . biological_region 222409 222412 0.999 - . logic_name=eponine scaffold_47 . biological_region 225341 225342 0.999 - . logic_name=eponine scaffold_47 . repeat_region 226696 226719 . ? . description=trf scaffold_47 ensembl protein_coding_gene 221039 222115 . + . ID=Phyra80252;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000074;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 221039 222115 . + . ID=Phyra80252;Parent=Phyra80252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 221039 222115 . + 0 ID=Phyra80252;Parent=Phyra80252;rank=1 scaffold_47 . exon 221039 222115 . + . ID=Phyra80252.1;Parent=Phyra80252;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 222473 229856 . + . ID=Phyra80253;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000075;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 222473 229856 . + . ID=Phyra80253;Parent=Phyra80253;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 222473 227792 . + 0 ID=Phyra80253;Parent=Phyra80253;rank=1 scaffold_47 . exon 222473 227792 . + . ID=Phyra80253.1;Parent=Phyra80253;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 227900 227903 . + 0 ID=Phyra80253;Parent=Phyra80253;rank=2 scaffold_47 . CDS 228020 228396 . + 0 ID=Phyra80253;Parent=Phyra80253;rank=3 scaffold_47 . CDS 228469 229413 . + 0 ID=Phyra80253;Parent=Phyra80253;rank=4 scaffold_47 . CDS 229471 229856 . + 0 ID=Phyra80253;Parent=Phyra80253;rank=5 scaffold_47 ensembl protein_coding_gene 217882 220901 . - . ID=Phyra95641;biotype=protein_coding;external_name=C_scaffold_47000028;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 217882 220901 . - . ID=Phyra95641;Parent=Phyra95641;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 217882 218232 . - 0 ID=Phyra95641;Parent=Phyra95641;rank=6 scaffold_47 . exon 217882 218232 . - . ID=Phyra95641.6;Parent=Phyra95641;constitutive=1;rank=6 scaffold_47 . CDS 218439 218452 . - 0 ID=Phyra95641;Parent=Phyra95641;rank=5 scaffold_47 . exon 218439 218452 . - . ID=Phyra95641.5;Parent=Phyra95641;constitutive=1;ensembl_phase=1;rank=5 scaffold_47 . CDS 218561 218840 . - 0 ID=Phyra95641;Parent=Phyra95641;rank=4 scaffold_47 . exon 218561 218840 . - . ID=Phyra95641.4;Parent=Phyra95641;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_47 . CDS 218925 219090 . - 0 ID=Phyra95641;Parent=Phyra95641;rank=3 scaffold_47 . exon 218925 219090 . - . ID=Phyra95641.3;Parent=Phyra95641;constitutive=1;ensembl_phase=2;rank=3 scaffold_47 . CDS 220090 220655 . - 0 ID=Phyra95641;Parent=Phyra95641;rank=2 scaffold_47 . exon 220090 220655 . - . ID=Phyra95641.2;Parent=Phyra95641;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_47 . CDS 220683 220901 . - 0 ID=Phyra95641;Parent=Phyra95641;rank=1 scaffold_47 . exon 220683 220901 . - . ID=Phyra95641.1;Parent=Phyra95641;constitutive=1;rank=1 scaffold_47 . exon 227900 227903 . + . ID=Phyra80253.2;Parent=Phyra80253;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_47 . exon 228020 228396 . + . ID=Phyra80253.3;Parent=Phyra80253;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_47 . exon 228469 229413 . + . ID=Phyra80253.4;Parent=Phyra80253;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_47 . exon 229471 229856 . + . ID=Phyra80253.5;Parent=Phyra80253;constitutive=1;ensembl_phase=1;rank=5 scaffold_47 ensembl protein_coding_gene 229922 231334 . - . ID=Phyra80254;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000076;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 229922 231334 . - . ID=Phyra80254;Parent=Phyra80254;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 229922 231334 . - 0 ID=Phyra80254;Parent=Phyra80254;rank=1 scaffold_47 . exon 229922 231334 . - . ID=Phyra80254.1;Parent=Phyra80254;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 233658 234533 . - . ID=Phyra80255;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000077;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 233658 234533 . - . ID=Phyra80255;Parent=Phyra80255;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 233658 234533 . - 0 ID=Phyra80255;Parent=Phyra80255;rank=1 scaffold_47 . exon 233658 234533 . - . ID=Phyra80255.1;Parent=Phyra80255;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 234731 235354 . + . ID=Phyra80256;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000078;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 234731 235354 . + . ID=Phyra80256;Parent=Phyra80256;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 234731 235354 . + 0 ID=Phyra80256;Parent=Phyra80256;rank=1 scaffold_47 . exon 234731 235354 . + . ID=Phyra80256.1;Parent=Phyra80256;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 235654 236446 . + . ID=Phyra80257;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000079;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 235654 236446 . + . ID=Phyra80257;Parent=Phyra80257;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 235654 236124 . + 0 ID=Phyra80257;Parent=Phyra80257;rank=1 scaffold_47 . exon 235654 236124 . + . ID=Phyra80257.1;Parent=Phyra80257;constitutive=1;rank=1 scaffold_47 . CDS 236210 236446 . + 0 ID=Phyra80257;Parent=Phyra80257;rank=2 scaffold_47 . exon 236210 236446 . + . ID=Phyra80257.2;Parent=Phyra80257;constitutive=1;rank=2 scaffold_47 ensembl protein_coding_gene 236750 237760 . - . ID=Phyra80258;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000080;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 236750 237760 . - . ID=Phyra80258;Parent=Phyra80258;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 236750 237052 . - 0 ID=Phyra80258;Parent=Phyra80258;rank=3 scaffold_47 . exon 236750 237052 . - . ID=Phyra80258.3;Parent=Phyra80258;constitutive=1;rank=3 scaffold_47 . CDS 237139 237609 . - 0 ID=Phyra80258;Parent=Phyra80258;rank=2 scaffold_47 . exon 237139 237609 . - . ID=Phyra80258.2;Parent=Phyra80258;constitutive=1;rank=2 scaffold_47 . CDS 237677 237760 . - 0 ID=Phyra80258;Parent=Phyra80258;rank=1 scaffold_47 . biological_region 244562 244562 0.999 - . logic_name=eponine scaffold_47 . biological_region 246182 246185 0.999 - . logic_name=eponine scaffold_47 ensembl protein_coding_gene 246382 247989 . + . ID=Phyra49454;biotype=protein_coding;external_name=gwEuk.47.12.1;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 246382 247989 . + . ID=Phyra49454;Parent=Phyra49454;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 246382 247265 . + 0 ID=Phyra49454;Parent=Phyra49454;rank=1 scaffold_47 . exon 246382 247265 . + . ID=Phyra49454.1;Parent=Phyra49454;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 247338 247450 . + 0 ID=Phyra49454;Parent=Phyra49454;rank=2 scaffold_47 . CDS 247544 247989 . + 0 ID=Phyra49454;Parent=Phyra49454;rank=3 scaffold_47 . exon 237677 237760 . - . ID=Phyra80258.1;Parent=Phyra80258;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 239872 240571 . + . ID=Phyra80260;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000082;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 239872 240571 . + . ID=Phyra80260;Parent=Phyra80260;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 239872 240471 . + 0 ID=Phyra80260;Parent=Phyra80260;rank=1 scaffold_47 . exon 239872 240471 . + . ID=Phyra80260.1;Parent=Phyra80260;constitutive=1;rank=1 scaffold_47 . CDS 240521 240571 . + 0 ID=Phyra80260;Parent=Phyra80260;rank=2 scaffold_47 . exon 240521 240571 . + . ID=Phyra80260.2;Parent=Phyra80260;constitutive=1;rank=2 scaffold_47 ensembl protein_coding_gene 240758 241657 . - . ID=Phyra80261;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000083;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 240758 241657 . - . ID=Phyra80261;Parent=Phyra80261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 240758 241657 . - 0 ID=Phyra80261;Parent=Phyra80261;rank=1 scaffold_47 . exon 240758 241657 . - . ID=Phyra80261.1;Parent=Phyra80261;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 242351 243583 . + . ID=Phyra80262;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000084;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 242351 243583 . + . ID=Phyra80262;Parent=Phyra80262;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 242351 243583 . + 0 ID=Phyra80262;Parent=Phyra80262;rank=1 scaffold_47 . exon 242351 243583 . + . ID=Phyra80262.1;Parent=Phyra80262;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 243676 246144 . - . ID=Phyra80263;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000085;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 243676 246144 . - . ID=Phyra80263;Parent=Phyra80263;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 243676 245088 . - 0 ID=Phyra80263;Parent=Phyra80263;rank=5 scaffold_47 . exon 243676 245088 . - . ID=Phyra80263.5;Parent=Phyra80263;constitutive=1;rank=5 scaffold_47 . CDS 245164 245356 . - 0 ID=Phyra80263;Parent=Phyra80263;rank=4 scaffold_47 . exon 245164 245356 . - . ID=Phyra80263.4;Parent=Phyra80263;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 . CDS 245445 245682 . - 0 ID=Phyra80263;Parent=Phyra80263;rank=3 scaffold_47 . exon 245445 245682 . - . ID=Phyra80263.3;Parent=Phyra80263;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_47 . CDS 245748 245820 . - 0 ID=Phyra80263;Parent=Phyra80263;rank=2 scaffold_47 . exon 245748 245820 . - . ID=Phyra80263.2;Parent=Phyra80263;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . CDS 245890 246144 . - 0 ID=Phyra80263;Parent=Phyra80263;rank=1 scaffold_47 . exon 245890 246144 . - . ID=Phyra80263.1;Parent=Phyra80263;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 238225 239682 . + . ID=Phyra95643;biotype=protein_coding;external_name=C_scaffold_47000030;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 238225 239682 . + . ID=Phyra95643;Parent=Phyra95643;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 238225 238390 . + 0 ID=Phyra95643;Parent=Phyra95643;rank=1 scaffold_47 . exon 238225 238390 . + . ID=Phyra95643.1;Parent=Phyra95643;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 238418 239682 . + 0 ID=Phyra95643;Parent=Phyra95643;rank=2 scaffold_47 . exon 238418 239682 . + . ID=Phyra95643.2;Parent=Phyra95643;constitutive=1;ensembl_phase=1;rank=2 scaffold_47 . repeat_region 256163 256182 . ? . description=trf scaffold_47 . exon 247338 247450 . + . ID=Phyra49454.2;Parent=Phyra49454;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_47 . exon 247544 247989 . + . ID=Phyra49454.3;Parent=Phyra49454;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 ensembl protein_coding_gene 251062 253617 . - . ID=Phyra80265;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000087;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 251062 253617 . - . ID=Phyra80265;Parent=Phyra80265;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 251062 253247 . - 0 ID=Phyra80265;Parent=Phyra80265;rank=2 scaffold_47 . exon 251062 253247 . - . ID=Phyra80265.2;Parent=Phyra80265;constitutive=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 253299 253617 . - 0 ID=Phyra80265;Parent=Phyra80265;rank=1 scaffold_47 . exon 253299 253617 . - . ID=Phyra80265.1;Parent=Phyra80265;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 ensembl protein_coding_gene 254204 255790 . + . ID=Phyra80266;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000088;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 254204 255790 . + . ID=Phyra80266;Parent=Phyra80266;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 254204 255790 . + 0 ID=Phyra80266;Parent=Phyra80266;rank=1 scaffold_47 . exon 254204 255790 . + . ID=Phyra80266.1;Parent=Phyra80266;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 255987 257375 . - . ID=Phyra80267;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000089;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 255987 257375 . - . ID=Phyra80267;Parent=Phyra80267;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 255987 256105 . - 0 ID=Phyra80267;Parent=Phyra80267;rank=5 scaffold_47 . exon 255987 256105 . - . ID=Phyra80267.5;Parent=Phyra80267;constitutive=1;ensembl_phase=1;rank=5 scaffold_47 . CDS 256192 256299 . - 0 ID=Phyra80267;Parent=Phyra80267;rank=4 scaffold_47 . exon 256192 256299 . - . ID=Phyra80267.4;Parent=Phyra80267;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_47 . CDS 256375 257050 . - 0 ID=Phyra80267;Parent=Phyra80267;rank=3 scaffold_47 . exon 256375 257050 . - . ID=Phyra80267.3;Parent=Phyra80267;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_47 . CDS 257116 257217 . - 0 ID=Phyra80267;Parent=Phyra80267;rank=2 scaffold_47 . CDS 257277 257375 . - 0 ID=Phyra80267;Parent=Phyra80267;rank=1 scaffold_47 . biological_region 258407 258409 0.999 - . logic_name=eponine scaffold_47 . biological_region 258484 258486 0.999 - . logic_name=eponine scaffold_47 . biological_region 258783 258788 0.999 + . logic_name=eponine scaffold_47 . biological_region 259723 259724 0.999 - . logic_name=eponine scaffold_47 . repeat_region 260523 260531 . ? . description=dust scaffold_47 . biological_region 266463 266465 0.999 + . logic_name=eponine scaffold_47 . biological_region 266467 266474 0.999 - . logic_name=eponine scaffold_47 . exon 257116 257217 . - . ID=Phyra80267.2;Parent=Phyra80267;constitutive=1;rank=2 scaffold_47 . exon 257277 257375 . - . ID=Phyra80267.1;Parent=Phyra80267;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 258780 260489 . + . ID=Phyra80268;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000090;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 258780 260489 . + . ID=Phyra80268;Parent=Phyra80268;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 258780 260489 . + 0 ID=Phyra80268;Parent=Phyra80268;rank=1 scaffold_47 . exon 258780 260489 . + . ID=Phyra80268.1;Parent=Phyra80268;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 260897 261379 . + . ID=Phyra80269;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000091;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 260897 261379 . + . ID=Phyra80269;Parent=Phyra80269;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 260897 261379 . + 0 ID=Phyra80269;Parent=Phyra80269;rank=1 scaffold_47 . exon 260897 261379 . + . ID=Phyra80269.1;Parent=Phyra80269;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 264429 265793 . - . ID=Phyra80270;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000092;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 264429 265793 . - . ID=Phyra80270;Parent=Phyra80270;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 264429 264603 . - 0 ID=Phyra80270;Parent=Phyra80270;rank=7 scaffold_47 . exon 264429 264603 . - . ID=Phyra80270.7;Parent=Phyra80270;constitutive=1;ensembl_phase=2;rank=7 scaffold_47 . CDS 264678 264772 . - 0 ID=Phyra80270;Parent=Phyra80270;rank=6 scaffold_47 . exon 264678 264772 . - . ID=Phyra80270.6;Parent=Phyra80270;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_47 . CDS 264848 264910 . - 0 ID=Phyra80270;Parent=Phyra80270;rank=5 scaffold_47 . exon 264848 264910 . - . ID=Phyra80270.5;Parent=Phyra80270;constitutive=1;rank=5 scaffold_47 . CDS 264983 265259 . - 0 ID=Phyra80270;Parent=Phyra80270;rank=4 scaffold_47 . exon 264983 265259 . - . ID=Phyra80270.4;Parent=Phyra80270;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 . CDS 265335 265408 . - 0 ID=Phyra80270;Parent=Phyra80270;rank=3 scaffold_47 . exon 265335 265408 . - . ID=Phyra80270.3;Parent=Phyra80270;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_47 . CDS 265498 265685 . - 0 ID=Phyra80270;Parent=Phyra80270;rank=2 scaffold_47 . exon 265498 265685 . - . ID=Phyra80270.2;Parent=Phyra80270;constitutive=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 265715 265793 . - 0 ID=Phyra80270;Parent=Phyra80270;rank=1 scaffold_47 . exon 265715 265793 . - . ID=Phyra80270.1;Parent=Phyra80270;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 ensembl protein_coding_gene 266372 267262 . + . ID=Phyra80271;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000093;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 266372 267262 . + . ID=Phyra80271;Parent=Phyra80271;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 266372 266469 . + 0 ID=Phyra80271;Parent=Phyra80271;rank=1 scaffold_47 . exon 266372 266469 . + . ID=Phyra80271.1;Parent=Phyra80271;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 266557 266645 . + 0 ID=Phyra80271;Parent=Phyra80271;rank=2 scaffold_47 . exon 266557 266645 . + . ID=Phyra80271.2;Parent=Phyra80271;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 266714 267150 . + 0 ID=Phyra80271;Parent=Phyra80271;rank=3 scaffold_47 . exon 266714 267150 . + . ID=Phyra80271.3;Parent=Phyra80271;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 267257 267262 . + 0 ID=Phyra80271;Parent=Phyra80271;rank=4 scaffold_47 . repeat_region 274164 274196 . ? . description=trf scaffold_47 . repeat_region 274170 274201 . ? . description=trf scaffold_47 ensembl protein_coding_gene 273989 274774 . - . ID=Phyra71785;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_47000006;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 273989 274774 . - . ID=Phyra71785;Parent=Phyra71785;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 273989 274688 . - 0 ID=Phyra71785;Parent=Phyra71785;rank=2 scaffold_47 . exon 273989 274688 . - . ID=Phyra71785.2;Parent=Phyra71785;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 274716 274774 . - 0 ID=Phyra71785;Parent=Phyra71785;rank=1 scaffold_47 . exon 274716 274774 . - . ID=Phyra71785.1;Parent=Phyra71785;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . exon 267257 267262 . + . ID=Phyra80271.4;Parent=Phyra80271;constitutive=1;rank=4 scaffold_47 ensembl protein_coding_gene 268991 269911 . - . ID=Phyra80272;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000094;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 268991 269911 . - . ID=Phyra80272;Parent=Phyra80272;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 268991 269911 . - 0 ID=Phyra80272;Parent=Phyra80272;rank=1 scaffold_47 . exon 268991 269911 . - . ID=Phyra80272.1;Parent=Phyra80272;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 270311 273064 . - . ID=Phyra80273;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000095;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 270311 273064 . - . ID=Phyra80273;Parent=Phyra80273;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 270311 273064 . - 0 ID=Phyra80273;Parent=Phyra80273;rank=1 scaffold_47 . exon 270311 273064 . - . ID=Phyra80273.1;Parent=Phyra80273;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 275082 276124 . + . ID=Phyra80275;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000097;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 275082 276124 . + . ID=Phyra80275;Parent=Phyra80275;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 275082 275346 . + 0 ID=Phyra80275;Parent=Phyra80275;rank=1 scaffold_47 . exon 275082 275346 . + . ID=Phyra80275.1;Parent=Phyra80275;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 275418 275492 . + 0 ID=Phyra80275;Parent=Phyra80275;rank=2 scaffold_47 . exon 275418 275492 . + . ID=Phyra80275.2;Parent=Phyra80275;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 275568 276124 . + 0 ID=Phyra80275;Parent=Phyra80275;rank=3 scaffold_47 . exon 275568 276124 . + . ID=Phyra80275.3;Parent=Phyra80275;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 ensembl protein_coding_gene 267885 268826 . + . ID=Phyra95651;biotype=protein_coding;external_name=C_scaffold_47000038;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 267885 268826 . + . ID=Phyra95651;Parent=Phyra95651;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 267885 267962 . + 0 ID=Phyra95651;Parent=Phyra95651;rank=1 scaffold_47 . exon 267885 267962 . + . ID=Phyra95651.1;Parent=Phyra95651;constitutive=1;rank=1 scaffold_47 . CDS 268380 268637 . + 0 ID=Phyra95651;Parent=Phyra95651;rank=2 scaffold_47 . exon 268380 268637 . + . ID=Phyra95651.2;Parent=Phyra95651;constitutive=1;rank=2 scaffold_47 . CDS 268731 268826 . + 0 ID=Phyra95651;Parent=Phyra95651;rank=3 scaffold_47 . exon 268731 268826 . + . ID=Phyra95651.3;Parent=Phyra95651;constitutive=1;rank=3 scaffold_47 ensembl protein_coding_gene 276202 279188 . - . ID=Phyra95657;biotype=protein_coding;external_name=C_scaffold_47000044;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 276202 279188 . - . ID=Phyra95657;Parent=Phyra95657;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 276202 276457 . - 0 ID=Phyra95657;Parent=Phyra95657;rank=4 scaffold_47 . exon 276202 276457 . - . ID=Phyra95657.4;Parent=Phyra95657;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 . CDS 276541 276773 . - 0 ID=Phyra95657;Parent=Phyra95657;rank=3 scaffold_47 . exon 276541 276773 . - . ID=Phyra95657.3;Parent=Phyra95657;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_47 . CDS 276845 276956 . - 0 ID=Phyra95657;Parent=Phyra95657;rank=2 scaffold_47 . CDS 277321 279188 . - 0 ID=Phyra95657;Parent=Phyra95657;rank=1 scaffold_47 . biological_region 279023 279024 0.999 + . logic_name=eponine scaffold_47 . biological_region 279095 279097 0.999 - . logic_name=eponine scaffold_47 . biological_region 279371 279375 0.999 - . logic_name=eponine scaffold_47 . biological_region 280037 280040 0.999 + . logic_name=eponine scaffold_47 . biological_region 280072 280077 0.999 + . logic_name=eponine scaffold_47 . biological_region 280089 280094 0.999 + . logic_name=eponine scaffold_47 . repeat_region 281365 281374 . ? . description=dust scaffold_47 . repeat_region 282158 282165 . ? . description=dust scaffold_47 . repeat_region 283966 283973 . ? . description=dust scaffold_47 . repeat_region 284504 284511 . ? . description=dust scaffold_47 . repeat_region 285800 285807 . ? . description=dust scaffold_47 ensembl protein_coding_gene 281178 282037 . + . ID=Phyra80277;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000099;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 281178 282037 . + . ID=Phyra80277;Parent=Phyra80277;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 281178 281183 . + 0 ID=Phyra80277;Parent=Phyra80277;rank=1 scaffold_47 . exon 281178 281183 . + . ID=Phyra80277.1;Parent=Phyra80277;constitutive=1;rank=1 scaffold_47 . CDS 281313 281340 . + 0 ID=Phyra80277;Parent=Phyra80277;rank=2 scaffold_47 . exon 281313 281340 . + . ID=Phyra80277.2;Parent=Phyra80277;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . CDS 281444 281703 . + 0 ID=Phyra80277;Parent=Phyra80277;rank=3 scaffold_47 . exon 281444 281703 . + . ID=Phyra80277.3;Parent=Phyra80277;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 281795 282037 . + 0 ID=Phyra80277;Parent=Phyra80277;rank=4 scaffold_47 . exon 281795 282037 . + . ID=Phyra80277.4;Parent=Phyra80277;constitutive=1;rank=4 scaffold_47 . exon 276845 276956 . - . ID=Phyra95657.2;Parent=Phyra95657;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . exon 277321 279188 . - . ID=Phyra95657.1;Parent=Phyra95657;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 ensembl protein_coding_gene 294850 296727 . + . ID=Phyra49456;biotype=protein_coding;external_name=gwEuk.47.14.1;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 294850 296727 . + . ID=Phyra49456;Parent=Phyra49456;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 294850 296727 . + 0 ID=Phyra49456;Parent=Phyra49456;rank=1 scaffold_47 . exon 294850 296727 . + . ID=Phyra49456.1;Parent=Phyra49456;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 287009 288792 . + . ID=Phyra80278;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000100;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 287009 288792 . + . ID=Phyra80278;Parent=Phyra80278;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 287009 287024 . + 0 ID=Phyra80278;Parent=Phyra80278;rank=1 scaffold_47 . exon 287009 287024 . + . ID=Phyra80278.1;Parent=Phyra80278;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 287314 287928 . + 0 ID=Phyra80278;Parent=Phyra80278;rank=2 scaffold_47 . exon 287314 287928 . + . ID=Phyra80278.2;Parent=Phyra80278;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 288072 288671 . + 0 ID=Phyra80278;Parent=Phyra80278;rank=3 scaffold_47 . exon 288072 288671 . + . ID=Phyra80278.3;Parent=Phyra80278;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 288752 288792 . + 0 ID=Phyra80278;Parent=Phyra80278;rank=4 scaffold_47 . exon 288752 288792 . + . ID=Phyra80278.4;Parent=Phyra80278;constitutive=1;ensembl_phase=1;rank=4 scaffold_47 ensembl protein_coding_gene 289000 289934 . - . ID=Phyra80279;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000101;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 289000 289934 . - . ID=Phyra80279;Parent=Phyra80279;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 289000 289152 . - 0 ID=Phyra80279;Parent=Phyra80279;rank=5 scaffold_47 . exon 289000 289152 . - . ID=Phyra80279.5;Parent=Phyra80279;constitutive=1;rank=5 scaffold_47 . CDS 289226 289400 . - 0 ID=Phyra80279;Parent=Phyra80279;rank=4 scaffold_47 . exon 289226 289400 . - . ID=Phyra80279.4;Parent=Phyra80279;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 . CDS 289459 289610 . - 0 ID=Phyra80279;Parent=Phyra80279;rank=3 scaffold_47 . exon 289459 289610 . - . ID=Phyra80279.3;Parent=Phyra80279;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_47 . CDS 289675 289750 . - 0 ID=Phyra80279;Parent=Phyra80279;rank=2 scaffold_47 . exon 289675 289750 . - . ID=Phyra80279.2;Parent=Phyra80279;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 289816 289934 . - 0 ID=Phyra80279;Parent=Phyra80279;rank=1 scaffold_47 . exon 289816 289934 . - . ID=Phyra80279.1;Parent=Phyra80279;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 ensembl protein_coding_gene 290206 291149 . - . ID=Phyra80280;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000102;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 290206 291149 . - . ID=Phyra80280;Parent=Phyra80280;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 290206 290361 . - 0 ID=Phyra80280;Parent=Phyra80280;rank=5 scaffold_47 . exon 290206 290361 . - . ID=Phyra80280.5;Parent=Phyra80280;constitutive=1;rank=5 scaffold_47 . CDS 290443 290617 . - 0 ID=Phyra80280;Parent=Phyra80280;rank=4 scaffold_47 . exon 290443 290617 . - . ID=Phyra80280.4;Parent=Phyra80280;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 . CDS 290684 290835 . - 0 ID=Phyra80280;Parent=Phyra80280;rank=3 scaffold_47 . exon 290684 290835 . - . ID=Phyra80280.3;Parent=Phyra80280;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_47 . CDS 290909 290984 . - 0 ID=Phyra80280;Parent=Phyra80280;rank=2 scaffold_47 . exon 290909 290984 . - . ID=Phyra80280.2;Parent=Phyra80280;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 291046 291149 . - 0 ID=Phyra80280;Parent=Phyra80280;rank=1 scaffold_47 . exon 291046 291149 . - . ID=Phyra80280.1;Parent=Phyra80280;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 ensembl protein_coding_gene 291246 291902 . + . ID=Phyra95660;biotype=protein_coding;external_name=C_scaffold_47000047;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 291246 291902 . + . ID=Phyra95660;Parent=Phyra95660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 291246 291294 . + 0 ID=Phyra95660;Parent=Phyra95660;rank=1 scaffold_47 . exon 291246 291294 . + . ID=Phyra95660.1;Parent=Phyra95660;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 291388 291609 . + 0 ID=Phyra95660;Parent=Phyra95660;rank=2 scaffold_47 . exon 291388 291609 . + . ID=Phyra95660.2;Parent=Phyra95660;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 291674 291774 . + 0 ID=Phyra95660;Parent=Phyra95660;rank=3 scaffold_47 . exon 291674 291774 . + . ID=Phyra95660.3;Parent=Phyra95660;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 291839 291902 . + 0 ID=Phyra95660;Parent=Phyra95660;rank=4 scaffold_47 . exon 291839 291902 . + . ID=Phyra95660.4;Parent=Phyra95660;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_47 . biological_region 299697 299698 0.999 + . logic_name=eponine scaffold_47 . biological_region 300184 300187 0.999 - . logic_name=eponine scaffold_47 . repeat_region 300945 300971 . ? . description=dust scaffold_47 . biological_region 301083 301086 0.999 + . logic_name=eponine scaffold_47 . biological_region 304954 304955 0.999 + . logic_name=eponine scaffold_47 ensembl pseudogene 304703 305101 . + . ID=Phyra49458;biotype=pseudogene;external_name=gwEuk.47.16.1;logic_name=jgi_phyra1 scaffold_47 ensembl pseudogene 304703 305101 . + . ID=Phyra49458;Parent=Phyra49458;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_47 . exon 304703 305101 . + . ID=Phyra49458.1;Parent=Phyra49458;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 305799 308682 . + . ID=Phyra49460;biotype=protein_coding;external_name=gwEuk.47.18.1;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 305799 308682 . + . ID=Phyra49460;Parent=Phyra49460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 305799 306025 . + 0 ID=Phyra49460;Parent=Phyra49460;rank=1 scaffold_47 . exon 305799 306025 . + . ID=Phyra49460.1;Parent=Phyra49460;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 306100 306197 . + 0 ID=Phyra49460;Parent=Phyra49460;rank=2 scaffold_47 . exon 306100 306197 . + . ID=Phyra49460.2;Parent=Phyra49460;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 306282 308682 . + 0 ID=Phyra49460;Parent=Phyra49460;rank=3 scaffold_47 . exon 306282 308682 . + . ID=Phyra49460.3;Parent=Phyra49460;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_47 ensembl protein_coding_gene 299620 302072 . + . ID=Phyra80283;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000105;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 299620 302072 . + . ID=Phyra80283;Parent=Phyra80283;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 299620 299678 . + 0 ID=Phyra80283;Parent=Phyra80283;rank=1 scaffold_47 . exon 299620 299678 . + . ID=Phyra80283.1;Parent=Phyra80283;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 299783 300311 . + 0 ID=Phyra80283;Parent=Phyra80283;rank=2 scaffold_47 . exon 299783 300311 . + . ID=Phyra80283.2;Parent=Phyra80283;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 300378 300446 . + 0 ID=Phyra80283;Parent=Phyra80283;rank=3 scaffold_47 . exon 300378 300446 . + . ID=Phyra80283.3;Parent=Phyra80283;constitutive=1;rank=3 scaffold_47 . CDS 300633 300723 . + 0 ID=Phyra80283;Parent=Phyra80283;rank=4 scaffold_47 . exon 300633 300723 . + . ID=Phyra80283.4;Parent=Phyra80283;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_47 . CDS 300819 300875 . + 0 ID=Phyra80283;Parent=Phyra80283;rank=5 scaffold_47 . exon 300819 300875 . + . ID=Phyra80283.5;Parent=Phyra80283;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_47 . CDS 300947 301641 . + 0 ID=Phyra80283;Parent=Phyra80283;rank=6 scaffold_47 . exon 300947 301641 . + . ID=Phyra80283.6;Parent=Phyra80283;constitutive=1;ensembl_phase=1;rank=6 scaffold_47 . CDS 301719 301787 . + 0 ID=Phyra80283;Parent=Phyra80283;rank=7 scaffold_47 . exon 301719 301787 . + . ID=Phyra80283.7;Parent=Phyra80283;constitutive=1;rank=7 scaffold_47 . CDS 301857 302031 . + 0 ID=Phyra80283;Parent=Phyra80283;rank=8 scaffold_47 . exon 301857 302031 . + . ID=Phyra80283.8;Parent=Phyra80283;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_47 . CDS 302062 302072 . + 0 ID=Phyra80283;Parent=Phyra80283;rank=9 scaffold_47 . exon 302062 302072 . + . ID=Phyra80283.9;Parent=Phyra80283;constitutive=1;ensembl_phase=1;rank=9 scaffold_47 ensembl protein_coding_gene 297083 299097 . - . ID=Phyra95662;biotype=protein_coding;external_name=C_scaffold_47000049;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 297083 299097 . - . ID=Phyra95662;Parent=Phyra95662;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 297083 297139 . - 0 ID=Phyra95662;Parent=Phyra95662;rank=8 scaffold_47 . exon 297083 297139 . - . ID=Phyra95662.8;Parent=Phyra95662;constitutive=1;rank=8 scaffold_47 . CDS 297220 297490 . - 0 ID=Phyra95662;Parent=Phyra95662;rank=7 scaffold_47 . exon 297220 297490 . - . ID=Phyra95662.7;Parent=Phyra95662;constitutive=1;ensembl_phase=2;rank=7 scaffold_47 . CDS 297564 297726 . - 0 ID=Phyra95662;Parent=Phyra95662;rank=6 scaffold_47 . exon 297564 297726 . - . ID=Phyra95662.6;Parent=Phyra95662;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_47 . CDS 297800 298193 . - 0 ID=Phyra95662;Parent=Phyra95662;rank=5 scaffold_47 . exon 297800 298193 . - . ID=Phyra95662.5;Parent=Phyra95662;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_47 . CDS 298264 298395 . - 0 ID=Phyra95662;Parent=Phyra95662;rank=4 scaffold_47 . exon 298264 298395 . - . ID=Phyra95662.4;Parent=Phyra95662;constitutive=1;rank=4 scaffold_47 . CDS 298470 298696 . - 0 ID=Phyra95662;Parent=Phyra95662;rank=3 scaffold_47 . exon 298470 298696 . - . ID=Phyra95662.3;Parent=Phyra95662;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 298785 298870 . - 0 ID=Phyra95662;Parent=Phyra95662;rank=2 scaffold_47 . exon 298785 298870 . - . ID=Phyra95662.2;Parent=Phyra95662;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 298970 299097 . - 0 ID=Phyra95662;Parent=Phyra95662;rank=1 scaffold_47 . exon 298970 299097 . - . ID=Phyra95662.1;Parent=Phyra95662;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . repeat_region 322592 322600 . ? . description=dust scaffold_47 . repeat_region 344351 344358 . ? . description=dust scaffold_47 . repeat_region 350086 350118 . ? . description=trf scaffold_47 . biological_region 354730 354732 0.999 + . logic_name=eponine scaffold_47 . repeat_region 358041 358325 . ? . description=dust scaffold_47 . repeat_region 358563 358574 . ? . description=dust scaffold_47 . repeat_region 359251 359300 . ? . description=dust scaffold_47 . repeat_region 360594 360674 . ? . description=dust scaffold_47 . repeat_region 361361 361368 . ? . description=dust scaffold_47 . repeat_region 362600 362649 . ? . description=dust scaffold_47 . repeat_region 363988 364037 . ? . description=dust scaffold_47 ensembl pseudogene 359445 362909 . - . ID=Phyra49465;biotype=pseudogene;external_name=gwEuk.47.23.1;logic_name=jgi_phyra1 scaffold_47 ensembl pseudogene 359445 362909 . - . ID=Phyra49465;Parent=Phyra49465;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_47 . exon 359445 359932 . - . ID=Phyra49465.3;Parent=Phyra49465;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . exon 360283 360508 . - . ID=Phyra49465.2;Parent=Phyra49465;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . exon 362697 362909 . - . ID=Phyra49465.1;Parent=Phyra49465;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 365120 369108 . + . ID=Phyra80286;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000108;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 365120 369108 . + . ID=Phyra80286;Parent=Phyra80286;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 365120 365826 . + 0 ID=Phyra80286;Parent=Phyra80286;rank=1 scaffold_47 . exon 365120 365826 . + . ID=Phyra80286.1;Parent=Phyra80286;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 365891 365926 . + 0 ID=Phyra80286;Parent=Phyra80286;rank=2 scaffold_47 . CDS 366060 366188 . + 0 ID=Phyra80286;Parent=Phyra80286;rank=3 scaffold_47 . CDS 366275 366738 . + 0 ID=Phyra80286;Parent=Phyra80286;rank=4 scaffold_47 . CDS 366812 367112 . + 0 ID=Phyra80286;Parent=Phyra80286;rank=5 scaffold_47 . CDS 367158 367511 . + 0 ID=Phyra80286;Parent=Phyra80286;rank=6 scaffold_47 . CDS 367663 368087 . + 0 ID=Phyra80286;Parent=Phyra80286;rank=7 scaffold_47 . CDS 368227 368480 . + 0 ID=Phyra80286;Parent=Phyra80286;rank=8 scaffold_47 . CDS 368543 368754 . + 0 ID=Phyra80286;Parent=Phyra80286;rank=9 scaffold_47 . CDS 368817 368835 . + 0 ID=Phyra80286;Parent=Phyra80286;rank=10 scaffold_47 . CDS 368896 369108 . + 0 ID=Phyra80286;Parent=Phyra80286;rank=11 scaffold_47 . repeat_region 366480 366499 . ? . description=trf scaffold_47 . biological_region 367806 367810 0.999 - . logic_name=eponine scaffold_47 . repeat_region 368986 369054 . ? . description=trf scaffold_47 . repeat_region 369532 369608 . ? . description=trf scaffold_47 . repeat_region 369738 369767 . ? . description=trf scaffold_47 . exon 365891 365926 . + . ID=Phyra80286.2;Parent=Phyra80286;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_47 . exon 366060 366188 . + . ID=Phyra80286.3;Parent=Phyra80286;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_47 . exon 366275 366738 . + . ID=Phyra80286.4;Parent=Phyra80286;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_47 . exon 366812 367112 . + . ID=Phyra80286.5;Parent=Phyra80286;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_47 . exon 367158 367511 . + . ID=Phyra80286.6;Parent=Phyra80286;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_47 . exon 367663 368087 . + . ID=Phyra80286.7;Parent=Phyra80286;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_47 . exon 368227 368480 . + . ID=Phyra80286.8;Parent=Phyra80286;constitutive=1;ensembl_phase=1;rank=8 scaffold_47 . exon 368543 368754 . + . ID=Phyra80286.9;Parent=Phyra80286;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_47 . exon 368817 368835 . + . ID=Phyra80286.10;Parent=Phyra80286;constitutive=1;ensembl_phase=2;rank=10 scaffold_47 . exon 368896 369108 . + . ID=Phyra80286.11;Parent=Phyra80286;constitutive=1;rank=11 scaffold_47 ensembl protein_coding_gene 370461 370901 . + . ID=Phyra80287;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000109;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 370461 370901 . + . ID=Phyra80287;Parent=Phyra80287;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 370461 370901 . + 0 ID=Phyra80287;Parent=Phyra80287;rank=1 scaffold_47 . exon 370461 370901 . + . ID=Phyra80287.1;Parent=Phyra80287;constitutive=1;rank=1 scaffold_47 . repeat_region 376505 376513 . ? . description=dust scaffold_47 . repeat_region 376834 377967 . ? . description=dust scaffold_47 . repeat_region 383296 383345 . ? . description=dust scaffold_47 ensembl protein_coding_gene 380690 384601 . - . ID=Phyra80288;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_47000110;logic_name=jgi_phyra1 scaffold_47 ensembl transcript 380690 384601 . - . ID=Phyra80288;Parent=Phyra80288;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_47 . CDS 380690 382079 . - 0 ID=Phyra80288;Parent=Phyra80288;rank=4 scaffold_47 . exon 380690 382079 . - . ID=Phyra80288.4;Parent=Phyra80288;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 . CDS 382120 382243 . - 0 ID=Phyra80288;Parent=Phyra80288;rank=3 scaffold_47 . exon 382120 382243 . - . ID=Phyra80288.3;Parent=Phyra80288;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_47 . CDS 382560 382977 . - 0 ID=Phyra80288;Parent=Phyra80288;rank=2 scaffold_47 . exon 382560 382977 . - . ID=Phyra80288.2;Parent=Phyra80288;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . CDS 383843 384601 . - 0 ID=Phyra80288;Parent=Phyra80288;rank=1 scaffold_47 . exon 383843 384601 . - . ID=Phyra80288.1;Parent=Phyra80288;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_46 1 394271 scaffold_46 . repeat_region 5269 26454 . ? . description=dust scaffold_46 ensembl protein_coding_gene 3305 4327 . - . ID=Phyra80090;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000001;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 3305 4327 . - . ID=Phyra80090;Parent=Phyra80090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 3305 4057 . - 0 ID=Phyra80090;Parent=Phyra80090;rank=2 scaffold_46 . exon 3305 4057 . - . ID=Phyra80090.2;Parent=Phyra80090;constitutive=1;rank=2 scaffold_46 . CDS 4145 4327 . - 0 ID=Phyra80090;Parent=Phyra80090;rank=1 scaffold_46 . exon 4145 4327 . - . ID=Phyra80090.1;Parent=Phyra80090;constitutive=1;rank=1 scaffold_46 . repeat_region 5269 26454 . ? . description=dust scaffold_46 ensembl protein_coding_gene 26704 28923 . - . ID=Phyra80091;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000002;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 26704 28923 . - . ID=Phyra80091;Parent=Phyra80091;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 26704 28923 . - 0 ID=Phyra80091;Parent=Phyra80091;rank=1 scaffold_46 . exon 26704 28923 . - . ID=Phyra80091.1;Parent=Phyra80091;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 29447 30475 . - . ID=Phyra80092;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000003;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 29447 30475 . - . ID=Phyra80092;Parent=Phyra80092;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 29447 30475 . - 0 ID=Phyra80092;Parent=Phyra80092;rank=1 scaffold_46 . exon 29447 30475 . - . ID=Phyra80092.1;Parent=Phyra80092;constitutive=1;rank=1 scaffold_46 . repeat_region 31398 31952 . ? . description=trf scaffold_46 . repeat_region 31398 31952 . ? . description=trf scaffold_46 . repeat_region 32452 32476 . ? . description=trf scaffold_46 ensembl protein_coding_gene 32382 34903 . + . ID=Phyra80093;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000004;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 32382 34903 . + . ID=Phyra80093;Parent=Phyra80093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 32382 34815 . + 0 ID=Phyra80093;Parent=Phyra80093;rank=1 scaffold_46 . exon 32382 34815 . + . ID=Phyra80093.1;Parent=Phyra80093;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . CDS 34863 34903 . + 0 ID=Phyra80093;Parent=Phyra80093;rank=2 scaffold_46 . exon 34863 34903 . + . ID=Phyra80093.2;Parent=Phyra80093;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 ensembl protein_coding_gene 39103 40801 . - . ID=Phyra80094;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000005;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 39103 40801 . - . ID=Phyra80094;Parent=Phyra80094;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 39103 39470 . - 0 ID=Phyra80094;Parent=Phyra80094;rank=2 scaffold_46 . exon 39103 39470 . - . ID=Phyra80094.2;Parent=Phyra80094;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 39541 40801 . - 0 ID=Phyra80094;Parent=Phyra80094;rank=1 scaffold_46 ensembl protein_coding_gene 36711 38930 . + . ID=Phyra95590;biotype=protein_coding;external_name=C_scaffold_46000002;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 36711 38930 . + . ID=Phyra95590;Parent=Phyra95590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 36711 37118 . + 0 ID=Phyra95590;Parent=Phyra95590;rank=1 scaffold_46 . exon 36711 37118 . + . ID=Phyra95590.1;Parent=Phyra95590;constitutive=1;rank=1 scaffold_46 . CDS 37230 37483 . + 0 ID=Phyra95590;Parent=Phyra95590;rank=2 scaffold_46 . exon 37230 37483 . + . ID=Phyra95590.2;Parent=Phyra95590;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_46 . CDS 37532 37704 . + 0 ID=Phyra95590;Parent=Phyra95590;rank=3 scaffold_46 . exon 37532 37704 . + . ID=Phyra95590.3;Parent=Phyra95590;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_46 . CDS 38065 38174 . + 0 ID=Phyra95590;Parent=Phyra95590;rank=4 scaffold_46 . exon 38065 38174 . + . ID=Phyra95590.4;Parent=Phyra95590;constitutive=1;ensembl_phase=1;rank=4 scaffold_46 . CDS 38295 38411 . + 0 ID=Phyra95590;Parent=Phyra95590;rank=5 scaffold_46 . exon 38295 38411 . + . ID=Phyra95590.5;Parent=Phyra95590;constitutive=1;rank=5 scaffold_46 . CDS 38739 38930 . + 0 ID=Phyra95590;Parent=Phyra95590;rank=6 scaffold_46 . exon 38739 38930 . + . ID=Phyra95590.6;Parent=Phyra95590;constitutive=1;rank=6 scaffold_46 . biological_region 39726 39729 0.999 - . logic_name=eponine scaffold_46 . repeat_region 42320 42333 . ? . description=dust scaffold_46 . repeat_region 45449 45530 . - . description=GypsyPi-1c_LTR scaffold_46 . repeat_region 45723 45773 . ? . description=dust scaffold_46 . exon 39541 40801 . - . ID=Phyra80094.1;Parent=Phyra80094;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 ensembl protein_coding_gene 42686 44959 . + . ID=Phyra80095;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000006;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 42686 44959 . + . ID=Phyra80095;Parent=Phyra80095;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 42686 42767 . + 0 ID=Phyra80095;Parent=Phyra80095;rank=1 scaffold_46 . exon 42686 42767 . + . ID=Phyra80095.1;Parent=Phyra80095;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . CDS 42815 42948 . + 0 ID=Phyra80095;Parent=Phyra80095;rank=2 scaffold_46 . exon 42815 42948 . + . ID=Phyra80095.2;Parent=Phyra80095;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 43009 43155 . + 0 ID=Phyra80095;Parent=Phyra80095;rank=3 scaffold_46 . exon 43009 43155 . + . ID=Phyra80095.3;Parent=Phyra80095;constitutive=1;rank=3 scaffold_46 . CDS 43240 43286 . + 0 ID=Phyra80095;Parent=Phyra80095;rank=4 scaffold_46 . exon 43240 43286 . + . ID=Phyra80095.4;Parent=Phyra80095;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_46 . CDS 43536 43773 . + 0 ID=Phyra80095;Parent=Phyra80095;rank=5 scaffold_46 . exon 43536 43773 . + . ID=Phyra80095.5;Parent=Phyra80095;constitutive=1;ensembl_phase=2;rank=5 scaffold_46 . CDS 43826 44959 . + 0 ID=Phyra80095;Parent=Phyra80095;rank=6 scaffold_46 . exon 43826 44959 . + . ID=Phyra80095.6;Parent=Phyra80095;constitutive=1;rank=6 scaffold_46 . repeat_region 59164 68715 . ? . description=dust scaffold_46 ensembl protein_coding_gene 68723 68980 . - . ID=Phyra49384;biotype=protein_coding;external_name=gwEuk.46.49.1;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 68723 68980 . - . ID=Phyra49384;Parent=Phyra49384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 68723 68980 . - 0 ID=Phyra49384;Parent=Phyra49384;rank=1 scaffold_46 . exon 68723 68980 . - . ID=Phyra49384.1;Parent=Phyra49384;constitutive=1;rank=1 scaffold_46 . biological_region 70702 70705 0.999 - . logic_name=eponine scaffold_46 . repeat_region 72087 72148 . ? . description=trf scaffold_46 . biological_region 73173 73178 0.999 - . logic_name=eponine scaffold_46 . repeat_region 78791 78826 . ? . description=trf scaffold_46 ensembl protein_coding_gene 69176 71797 . - . ID=Phyra80096;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000007;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 69176 71797 . - . ID=Phyra80096;Parent=Phyra80096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 69176 69203 . - 0 ID=Phyra80096;Parent=Phyra80096;rank=4 scaffold_46 . exon 69176 69203 . - . ID=Phyra80096.4;Parent=Phyra80096;constitutive=1;ensembl_phase=2;rank=4 scaffold_46 . CDS 69375 69661 . - 0 ID=Phyra80096;Parent=Phyra80096;rank=3 scaffold_46 . exon 69375 69661 . - . ID=Phyra80096.3;Parent=Phyra80096;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_46 . CDS 69691 70391 . - 0 ID=Phyra80096;Parent=Phyra80096;rank=2 scaffold_46 . exon 69691 70391 . - . ID=Phyra80096.2;Parent=Phyra80096;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 70414 71797 . - 0 ID=Phyra80096;Parent=Phyra80096;rank=1 scaffold_46 . exon 70414 71797 . - . ID=Phyra80096.1;Parent=Phyra80096;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 ensembl protein_coding_gene 75048 76307 . + . ID=Phyra80097;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000008;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 75048 76307 . + . ID=Phyra80097;Parent=Phyra80097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 75048 76307 . + 0 ID=Phyra80097;Parent=Phyra80097;rank=1 scaffold_46 . exon 75048 76307 . + . ID=Phyra80097.1;Parent=Phyra80097;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 78482 79855 . + . ID=Phyra80098;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000009;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 78482 79855 . + . ID=Phyra80098;Parent=Phyra80098;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 78482 78586 . + 0 ID=Phyra80098;Parent=Phyra80098;rank=1 scaffold_46 . exon 78482 78586 . + . ID=Phyra80098.1;Parent=Phyra80098;constitutive=1;rank=1 scaffold_46 . CDS 78688 78826 . + 0 ID=Phyra80098;Parent=Phyra80098;rank=2 scaffold_46 . exon 78688 78826 . + . ID=Phyra80098.2;Parent=Phyra80098;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_46 . CDS 78895 79398 . + 0 ID=Phyra80098;Parent=Phyra80098;rank=3 scaffold_46 . CDS 79470 79855 . + 0 ID=Phyra80098;Parent=Phyra80098;rank=4 scaffold_46 . repeat_region 82352 82359 . ? . description=dust scaffold_46 . repeat_region 85564 85767 . + . description=Polinton-1_PI scaffold_46 . repeat_region 85887 85936 . + . description=Polinton-1_PI scaffold_46 . exon 78895 79398 . + . ID=Phyra80098.3;Parent=Phyra80098;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_46 . exon 79470 79855 . + . ID=Phyra80098.4;Parent=Phyra80098;constitutive=1;ensembl_phase=1;rank=4 scaffold_46 ensembl protein_coding_gene 80350 80860 . - . ID=Phyra80099;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000010;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 80350 80860 . - . ID=Phyra80099;Parent=Phyra80099;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 80350 80652 . - 0 ID=Phyra80099;Parent=Phyra80099;rank=2 scaffold_46 . exon 80350 80652 . - . ID=Phyra80099.2;Parent=Phyra80099;constitutive=1;rank=2 scaffold_46 . CDS 80714 80860 . - 0 ID=Phyra80099;Parent=Phyra80099;rank=1 scaffold_46 . exon 80714 80860 . - . ID=Phyra80099.1;Parent=Phyra80099;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 81373 82170 . + . ID=Phyra80100;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000011;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 81373 82170 . + . ID=Phyra80100;Parent=Phyra80100;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 81373 82170 . + 0 ID=Phyra80100;Parent=Phyra80100;rank=1 scaffold_46 . exon 81373 82170 . + . ID=Phyra80100.1;Parent=Phyra80100;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 83253 91483 . + . ID=Phyra80101;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000012;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 83253 91483 . + . ID=Phyra80101;Parent=Phyra80101;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 83253 83285 . + 0 ID=Phyra80101;Parent=Phyra80101;rank=1 scaffold_46 . exon 83253 83285 . + . ID=Phyra80101.1;Parent=Phyra80101;constitutive=1;rank=1 scaffold_46 . CDS 83352 85462 . + 0 ID=Phyra80101;Parent=Phyra80101;rank=2 scaffold_46 . exon 83352 85462 . + . ID=Phyra80101.2;Parent=Phyra80101;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_46 . CDS 85591 86194 . + 0 ID=Phyra80101;Parent=Phyra80101;rank=3 scaffold_46 . exon 85591 86194 . + . ID=Phyra80101.3;Parent=Phyra80101;constitutive=1;ensembl_phase=2;rank=3 scaffold_46 . CDS 86226 86696 . + 0 ID=Phyra80101;Parent=Phyra80101;rank=4 scaffold_46 . exon 86226 86696 . + . ID=Phyra80101.4;Parent=Phyra80101;constitutive=1;rank=4 scaffold_46 . CDS 87384 91432 . + 0 ID=Phyra80101;Parent=Phyra80101;rank=5 scaffold_46 . exon 87384 91432 . + . ID=Phyra80101.5;Parent=Phyra80101;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_46 . CDS 91480 91483 . + 0 ID=Phyra80101;Parent=Phyra80101;rank=6 scaffold_46 . biological_region 89278 89278 0.999 + . logic_name=eponine scaffold_46 . biological_region 91299 91302 0.999 - . logic_name=eponine scaffold_46 ensembl protein_coding_gene 95827 97197 . + . ID=Phyra71767;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_46000001;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 95827 97197 . + . ID=Phyra71767;Parent=Phyra71767;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 95827 97197 . + 0 ID=Phyra71767;Parent=Phyra71767;rank=1 scaffold_46 . exon 95827 97197 . + . ID=Phyra71767.1;Parent=Phyra71767;constitutive=1;rank=1 scaffold_46 . exon 91480 91483 . + . ID=Phyra80101.6;Parent=Phyra80101;constitutive=1;ensembl_phase=2;rank=6 scaffold_46 ensembl protein_coding_gene 91970 93334 . - . ID=Phyra80102;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000013;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 91970 93334 . - . ID=Phyra80102;Parent=Phyra80102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 91970 93334 . - 0 ID=Phyra80102;Parent=Phyra80102;rank=1 scaffold_46 . exon 91970 93334 . - . ID=Phyra80102.1;Parent=Phyra80102;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 97552 105157 . - . ID=Phyra80104;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000015;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 97552 105157 . - . ID=Phyra80104;Parent=Phyra80104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 97552 98106 . - 0 ID=Phyra80104;Parent=Phyra80104;rank=9 scaffold_46 . exon 97552 98106 . - . ID=Phyra80104.9;Parent=Phyra80104;constitutive=1;rank=9 scaffold_46 . CDS 98181 98235 . - 0 ID=Phyra80104;Parent=Phyra80104;rank=8 scaffold_46 . exon 98181 98235 . - . ID=Phyra80104.8;Parent=Phyra80104;constitutive=1;ensembl_phase=2;rank=8 scaffold_46 . CDS 98302 98432 . - 0 ID=Phyra80104;Parent=Phyra80104;rank=7 scaffold_46 . exon 98302 98432 . - . ID=Phyra80104.7;Parent=Phyra80104;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_46 . CDS 98500 100052 . - 0 ID=Phyra80104;Parent=Phyra80104;rank=6 scaffold_46 . exon 98500 100052 . - . ID=Phyra80104.6;Parent=Phyra80104;constitutive=1;ensembl_phase=1;rank=6 scaffold_46 . CDS 100095 102285 . - 0 ID=Phyra80104;Parent=Phyra80104;rank=5 scaffold_46 . CDS 102359 102416 . - 0 ID=Phyra80104;Parent=Phyra80104;rank=4 scaffold_46 . CDS 102477 102684 . - 0 ID=Phyra80104;Parent=Phyra80104;rank=3 scaffold_46 . CDS 102741 102811 . - 0 ID=Phyra80104;Parent=Phyra80104;rank=2 scaffold_46 . CDS 102861 105157 . - 0 ID=Phyra80104;Parent=Phyra80104;rank=1 scaffold_46 . exon 100095 102285 . - . ID=Phyra80104.5;Parent=Phyra80104;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_46 . exon 102359 102416 . - . ID=Phyra80104.4;Parent=Phyra80104;constitutive=1;ensembl_phase=2;rank=4 scaffold_46 . exon 102477 102684 . - . ID=Phyra80104.3;Parent=Phyra80104;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_46 . exon 102741 102811 . - . ID=Phyra80104.2;Parent=Phyra80104;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_46 . exon 102861 105157 . - . ID=Phyra80104.1;Parent=Phyra80104;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 ensembl protein_coding_gene 105910 108354 . - . ID=Phyra80105;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000016;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 105910 108354 . - . ID=Phyra80105;Parent=Phyra80105;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 105910 108354 . - 0 ID=Phyra80105;Parent=Phyra80105;rank=1 scaffold_46 . exon 105910 108354 . - . ID=Phyra80105.1;Parent=Phyra80105;constitutive=1;rank=1 scaffold_46 . repeat_region 108941 109002 . ? . description=dust scaffold_46 . repeat_region 109342 109352 . ? . description=dust scaffold_46 . biological_region 113317 113320 0.999 + . logic_name=eponine scaffold_46 . biological_region 114511 114516 0.999 + . logic_name=eponine scaffold_46 . biological_region 114583 114583 0.999 - . logic_name=eponine scaffold_46 . biological_region 116070 116073 0.999 + . logic_name=eponine scaffold_46 . biological_region 116099 116103 0.999 + . logic_name=eponine scaffold_46 . biological_region 116107 116112 0.999 + . logic_name=eponine scaffold_46 . biological_region 116268 116270 0.999 - . logic_name=eponine scaffold_46 . biological_region 117061 117063 0.999 + . logic_name=eponine scaffold_46 ensembl protein_coding_gene 117216 125683 . - . ID=Phyra80108;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000019;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 117216 125683 . - . ID=Phyra80108;Parent=Phyra80108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 117216 123788 . - 0 ID=Phyra80108;Parent=Phyra80108;rank=5 scaffold_46 . exon 117216 123788 . - . ID=Phyra80108.5;Parent=Phyra80108;constitutive=1;rank=5 scaffold_46 . CDS 123840 124609 . - 0 ID=Phyra80108;Parent=Phyra80108;rank=4 scaffold_46 . CDS 124717 124754 . - 0 ID=Phyra80108;Parent=Phyra80108;rank=3 scaffold_46 . CDS 124801 125095 . - 0 ID=Phyra80108;Parent=Phyra80108;rank=2 scaffold_46 . CDS 125170 125683 . - 0 ID=Phyra80108;Parent=Phyra80108;rank=1 scaffold_46 ensembl protein_coding_gene 114350 115747 . + . ID=Phyra95594;biotype=protein_coding;external_name=C_scaffold_46000006;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 114350 115747 . + . ID=Phyra95594;Parent=Phyra95594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 114350 115165 . + 0 ID=Phyra95594;Parent=Phyra95594;rank=1 scaffold_46 . exon 114350 115165 . + . ID=Phyra95594.1;Parent=Phyra95594;constitutive=1;rank=1 scaffold_46 . CDS 115225 115292 . + 0 ID=Phyra95594;Parent=Phyra95594;rank=2 scaffold_46 . exon 115225 115292 . + . ID=Phyra95594.2;Parent=Phyra95594;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_46 . CDS 115357 115461 . + 0 ID=Phyra95594;Parent=Phyra95594;rank=3 scaffold_46 . exon 115357 115461 . + . ID=Phyra95594.3;Parent=Phyra95594;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_46 . CDS 115540 115569 . + 0 ID=Phyra95594;Parent=Phyra95594;rank=4 scaffold_46 . exon 115540 115569 . + . ID=Phyra95594.4;Parent=Phyra95594;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_46 . CDS 115621 115747 . + 0 ID=Phyra95594;Parent=Phyra95594;rank=5 scaffold_46 . exon 115621 115747 . + . ID=Phyra95594.5;Parent=Phyra95594;constitutive=1;ensembl_phase=2;rank=5 scaffold_46 ensembl protein_coding_gene 115865 116311 . - . ID=Phyra95595;biotype=protein_coding;external_name=C_scaffold_46000007;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 115865 116311 . - . ID=Phyra95595;Parent=Phyra95595;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 115865 116120 . - 0 ID=Phyra95595;Parent=Phyra95595;rank=2 scaffold_46 . exon 115865 116120 . - . ID=Phyra95595.2;Parent=Phyra95595;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 116154 116311 . - 0 ID=Phyra95595;Parent=Phyra95595;rank=1 scaffold_46 . exon 116154 116311 . - . ID=Phyra95595.1;Parent=Phyra95595;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . repeat_region 120171 121090 . ? . description=trf scaffold_46 . repeat_region 127621 127645 . ? . description=trf scaffold_46 . exon 123840 124609 . - . ID=Phyra80108.4;Parent=Phyra80108;constitutive=1;ensembl_phase=1;rank=4 scaffold_46 . exon 124717 124754 . - . ID=Phyra80108.3;Parent=Phyra80108;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_46 . exon 124801 125095 . - . ID=Phyra80108.2;Parent=Phyra80108;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_46 . exon 125170 125683 . - . ID=Phyra80108.1;Parent=Phyra80108;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 ensembl protein_coding_gene 125839 127029 . + . ID=Phyra80109;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000020;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 125839 127029 . + . ID=Phyra80109;Parent=Phyra80109;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 125839 126534 . + 0 ID=Phyra80109;Parent=Phyra80109;rank=1 scaffold_46 . exon 125839 126534 . + . ID=Phyra80109.1;Parent=Phyra80109;constitutive=1;rank=1 scaffold_46 . CDS 126603 126910 . + 0 ID=Phyra80109;Parent=Phyra80109;rank=2 scaffold_46 . exon 126603 126910 . + . ID=Phyra80109.2;Parent=Phyra80109;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_46 . CDS 127008 127029 . + 0 ID=Phyra80109;Parent=Phyra80109;rank=3 scaffold_46 . exon 127008 127029 . + . ID=Phyra80109.3;Parent=Phyra80109;constitutive=1;ensembl_phase=2;rank=3 scaffold_46 ensembl protein_coding_gene 127209 127697 . - . ID=Phyra80110;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000021;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 127209 127697 . - . ID=Phyra80110;Parent=Phyra80110;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 127209 127697 . - 0 ID=Phyra80110;Parent=Phyra80110;rank=1 scaffold_46 . exon 127209 127697 . - . ID=Phyra80110.1;Parent=Phyra80110;constitutive=1;rank=1 scaffold_46 . biological_region 131787 131789 0.999 - . logic_name=eponine scaffold_46 . repeat_region 132785 132794 . ? . description=dust scaffold_46 . biological_region 133008 133008 0.999 + . logic_name=eponine scaffold_46 . biological_region 133138 133139 0.999 - . logic_name=eponine scaffold_46 . biological_region 133915 133918 0.999 + . logic_name=eponine scaffold_46 . biological_region 135112 135118 0.999 - . logic_name=eponine scaffold_46 . repeat_region 136796 136845 . ? . description=dust scaffold_46 ensembl protein_coding_gene 132891 134612 . + . ID=Phyra80113;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000024;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 132891 134612 . + . ID=Phyra80113;Parent=Phyra80113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 132891 134612 . + 0 ID=Phyra80113;Parent=Phyra80113;rank=1 scaffold_46 . exon 132891 134612 . + . ID=Phyra80113.1;Parent=Phyra80113;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 137595 139173 . + . ID=Phyra80115;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000026;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 137595 139173 . + . ID=Phyra80115;Parent=Phyra80115;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 137595 137780 . + 0 ID=Phyra80115;Parent=Phyra80115;rank=1 scaffold_46 . exon 137595 137780 . + . ID=Phyra80115.1;Parent=Phyra80115;constitutive=1;rank=1 scaffold_46 . CDS 138261 138464 . + 0 ID=Phyra80115;Parent=Phyra80115;rank=2 scaffold_46 . CDS 138540 138602 . + 0 ID=Phyra80115;Parent=Phyra80115;rank=3 scaffold_46 . CDS 138632 138742 . + 0 ID=Phyra80115;Parent=Phyra80115;rank=4 scaffold_46 . CDS 138819 138932 . + 0 ID=Phyra80115;Parent=Phyra80115;rank=5 scaffold_46 . CDS 138997 139173 . + 0 ID=Phyra80115;Parent=Phyra80115;rank=6 scaffold_46 ensembl protein_coding_gene 128857 130827 . - . ID=Phyra95598;biotype=protein_coding;external_name=C_scaffold_46000010;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 128857 130827 . - . ID=Phyra95598;Parent=Phyra95598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 128857 129381 . - 0 ID=Phyra95598;Parent=Phyra95598;rank=6 scaffold_46 . exon 128857 129381 . - . ID=Phyra95598.6;Parent=Phyra95598;constitutive=1;rank=6 scaffold_46 . CDS 129654 129857 . - 0 ID=Phyra95598;Parent=Phyra95598;rank=5 scaffold_46 . exon 129654 129857 . - . ID=Phyra95598.5;Parent=Phyra95598;constitutive=1;rank=5 scaffold_46 . CDS 129930 130099 . - 0 ID=Phyra95598;Parent=Phyra95598;rank=4 scaffold_46 . exon 129930 130099 . - . ID=Phyra95598.4;Parent=Phyra95598;constitutive=1;ensembl_phase=1;rank=4 scaffold_46 . CDS 130124 130332 . - 0 ID=Phyra95598;Parent=Phyra95598;rank=3 scaffold_46 . exon 130124 130332 . - . ID=Phyra95598.3;Parent=Phyra95598;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_46 . CDS 130401 130648 . - 0 ID=Phyra95598;Parent=Phyra95598;rank=2 scaffold_46 . exon 130401 130648 . - . ID=Phyra95598.2;Parent=Phyra95598;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_46 . CDS 130786 130827 . - 0 ID=Phyra95598;Parent=Phyra95598;rank=1 scaffold_46 . exon 130786 130827 . - . ID=Phyra95598.1;Parent=Phyra95598;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 134950 136619 . - . ID=Phyra95600;biotype=protein_coding;external_name=C_scaffold_46000012;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 134950 136619 . - . ID=Phyra95600;Parent=Phyra95600;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 134950 136476 . - 0 ID=Phyra95600;Parent=Phyra95600;rank=2 scaffold_46 . exon 134950 136476 . - . ID=Phyra95600.2;Parent=Phyra95600;constitutive=1;rank=2 scaffold_46 . CDS 136572 136619 . - 0 ID=Phyra95600;Parent=Phyra95600;rank=1 scaffold_46 . exon 136572 136619 . - . ID=Phyra95600.1;Parent=Phyra95600;constitutive=1;rank=1 scaffold_46 . repeat_region 146397 146434 . ? . description=trf scaffold_46 . repeat_region 146397 146434 . + . description=(CAG)n scaffold_46 . repeat_region 146844 146962 . ? . description=trf scaffold_46 . exon 138261 138464 . + . ID=Phyra80115.2;Parent=Phyra80115;constitutive=1;rank=2 scaffold_46 . exon 138540 138602 . + . ID=Phyra80115.3;Parent=Phyra80115;constitutive=1;rank=3 scaffold_46 . exon 138632 138742 . + . ID=Phyra80115.4;Parent=Phyra80115;constitutive=1;rank=4 scaffold_46 . exon 138819 138932 . + . ID=Phyra80115.5;Parent=Phyra80115;constitutive=1;rank=5 scaffold_46 . exon 138997 139173 . + . ID=Phyra80115.6;Parent=Phyra80115;constitutive=1;rank=6 scaffold_46 ensembl protein_coding_gene 140041 140595 . - . ID=Phyra80116;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000027;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 140041 140595 . - . ID=Phyra80116;Parent=Phyra80116;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 140041 140595 . - 0 ID=Phyra80116;Parent=Phyra80116;rank=1 scaffold_46 . exon 140041 140595 . - . ID=Phyra80116.1;Parent=Phyra80116;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 144486 147909 . + . ID=Phyra80117;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000028;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 144486 147909 . + . ID=Phyra80117;Parent=Phyra80117;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 144486 144722 . + 0 ID=Phyra80117;Parent=Phyra80117;rank=1 scaffold_46 . exon 144486 144722 . + . ID=Phyra80117.1;Parent=Phyra80117;constitutive=1;rank=1 scaffold_46 . CDS 144758 144924 . + 0 ID=Phyra80117;Parent=Phyra80117;rank=2 scaffold_46 . exon 144758 144924 . + . ID=Phyra80117.2;Parent=Phyra80117;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_46 . CDS 145234 145267 . + 0 ID=Phyra80117;Parent=Phyra80117;rank=3 scaffold_46 . exon 145234 145267 . + . ID=Phyra80117.3;Parent=Phyra80117;constitutive=1;ensembl_phase=2;rank=3 scaffold_46 . CDS 145644 145774 . + 0 ID=Phyra80117;Parent=Phyra80117;rank=4 scaffold_46 . exon 145644 145774 . + . ID=Phyra80117.4;Parent=Phyra80117;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_46 . CDS 145937 145976 . + 0 ID=Phyra80117;Parent=Phyra80117;rank=5 scaffold_46 . exon 145937 145976 . + . ID=Phyra80117.5;Parent=Phyra80117;constitutive=1;ensembl_phase=2;rank=5 scaffold_46 . CDS 146370 146388 . + 0 ID=Phyra80117;Parent=Phyra80117;rank=6 scaffold_46 . exon 146370 146388 . + . ID=Phyra80117.6;Parent=Phyra80117;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_46 . CDS 146488 146647 . + 0 ID=Phyra80117;Parent=Phyra80117;rank=7 scaffold_46 . exon 146488 146647 . + . ID=Phyra80117.7;Parent=Phyra80117;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_46 . CDS 146714 147131 . + 0 ID=Phyra80117;Parent=Phyra80117;rank=8 scaffold_46 . exon 146714 147131 . + . ID=Phyra80117.8;Parent=Phyra80117;constitutive=1;ensembl_phase=2;rank=8 scaffold_46 . CDS 147187 147909 . + 0 ID=Phyra80117;Parent=Phyra80117;rank=9 scaffold_46 . exon 147187 147909 . + . ID=Phyra80117.9;Parent=Phyra80117;constitutive=1;rank=9 scaffold_46 . biological_region 150154 150156 0.999 + . logic_name=eponine scaffold_46 . biological_region 150176 150177 0.999 - . logic_name=eponine scaffold_46 . biological_region 150232 150234 0.999 + . logic_name=eponine scaffold_46 . repeat_region 151157 151168 . ? . description=dust scaffold_46 . biological_region 157648 157651 0.999 + . logic_name=eponine scaffold_46 . biological_region 157690 157695 0.999 - . logic_name=eponine scaffold_46 ensembl protein_coding_gene 148782 151520 . - . ID=Phyra80118;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000029;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 148782 151520 . - . ID=Phyra80118;Parent=Phyra80118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 148782 148958 . - 0 ID=Phyra80118;Parent=Phyra80118;rank=8 scaffold_46 . exon 148782 148958 . - . ID=Phyra80118.8;Parent=Phyra80118;constitutive=1;rank=8 scaffold_46 . CDS 149023 149136 . - 0 ID=Phyra80118;Parent=Phyra80118;rank=7 scaffold_46 . exon 149023 149136 . - . ID=Phyra80118.7;Parent=Phyra80118;constitutive=1;rank=7 scaffold_46 . CDS 149213 149807 . - 0 ID=Phyra80118;Parent=Phyra80118;rank=6 scaffold_46 . exon 149213 149807 . - . ID=Phyra80118.6;Parent=Phyra80118;constitutive=1;ensembl_phase=2;rank=6 scaffold_46 . CDS 149848 150260 . - 0 ID=Phyra80118;Parent=Phyra80118;rank=5 scaffold_46 . exon 149848 150260 . - . ID=Phyra80118.5;Parent=Phyra80118;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_46 . CDS 150341 150422 . - 0 ID=Phyra80118;Parent=Phyra80118;rank=4 scaffold_46 . exon 150341 150422 . - . ID=Phyra80118.4;Parent=Phyra80118;constitutive=1;ensembl_phase=2;rank=4 scaffold_46 . CDS 150757 150959 . - 0 ID=Phyra80118;Parent=Phyra80118;rank=3 scaffold_46 . exon 150757 150959 . - . ID=Phyra80118.3;Parent=Phyra80118;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_46 . CDS 151276 151489 . - 0 ID=Phyra80118;Parent=Phyra80118;rank=2 scaffold_46 . exon 151276 151489 . - . ID=Phyra80118.2;Parent=Phyra80118;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 151510 151520 . - 0 ID=Phyra80118;Parent=Phyra80118;rank=1 scaffold_46 . exon 151510 151520 . - . ID=Phyra80118.1;Parent=Phyra80118;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 ensembl protein_coding_gene 152941 157809 . - . ID=Phyra95601;biotype=protein_coding;external_name=C_scaffold_46000013;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 152941 157809 . - . ID=Phyra95601;Parent=Phyra95601;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 152941 153429 . - 0 ID=Phyra95601;Parent=Phyra95601;rank=11 scaffold_46 . exon 152941 153429 . - . ID=Phyra95601.11;Parent=Phyra95601;constitutive=1;rank=11 scaffold_46 . CDS 153499 153669 . - 0 ID=Phyra95601;Parent=Phyra95601;rank=10 scaffold_46 . exon 153499 153669 . - . ID=Phyra95601.10;Parent=Phyra95601;constitutive=1;rank=10 scaffold_46 . CDS 153739 153911 . - 0 ID=Phyra95601;Parent=Phyra95601;rank=9 scaffold_46 . exon 153739 153911 . - . ID=Phyra95601.9;Parent=Phyra95601;constitutive=1;ensembl_phase=1;rank=9 scaffold_46 . CDS 154008 154625 . - 0 ID=Phyra95601;Parent=Phyra95601;rank=8 scaffold_46 . exon 154008 154625 . - . ID=Phyra95601.8;Parent=Phyra95601;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_46 . CDS 154677 155161 . - 0 ID=Phyra95601;Parent=Phyra95601;rank=7 scaffold_46 . exon 154677 155161 . - . ID=Phyra95601.7;Parent=Phyra95601;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_46 . CDS 155183 155297 . - 0 ID=Phyra95601;Parent=Phyra95601;rank=6 scaffold_46 . exon 155183 155297 . - . ID=Phyra95601.6;Parent=Phyra95601;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_46 . CDS 155568 155834 . - 0 ID=Phyra95601;Parent=Phyra95601;rank=5 scaffold_46 . exon 155568 155834 . - . ID=Phyra95601.5;Parent=Phyra95601;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_46 . CDS 156000 156389 . - 0 ID=Phyra95601;Parent=Phyra95601;rank=4 scaffold_46 . exon 156000 156389 . - . ID=Phyra95601.4;Parent=Phyra95601;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_46 . CDS 156711 157074 . - 0 ID=Phyra95601;Parent=Phyra95601;rank=3 scaffold_46 . exon 156711 157074 . - . ID=Phyra95601.3;Parent=Phyra95601;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_46 . CDS 157111 157573 . - 0 ID=Phyra95601;Parent=Phyra95601;rank=2 scaffold_46 . exon 157111 157573 . - . ID=Phyra95601.2;Parent=Phyra95601;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 157598 157809 . - 0 ID=Phyra95601;Parent=Phyra95601;rank=1 scaffold_46 . exon 157598 157809 . - . ID=Phyra95601.1;Parent=Phyra95601;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . repeat_region 160221 160241 . ? . description=trf scaffold_46 ensembl protein_coding_gene 167330 168793 . - . ID=Phyra49427;biotype=protein_coding;external_name=gwEuk.46.92.1;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 167330 168793 . - . ID=Phyra49427;Parent=Phyra49427;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 167330 167406 . - 0 ID=Phyra49427;Parent=Phyra49427;rank=2 scaffold_46 . exon 167330 167406 . - . ID=Phyra49427.2;Parent=Phyra49427;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 167473 168793 . - 0 ID=Phyra49427;Parent=Phyra49427;rank=1 scaffold_46 . exon 167473 168793 . - . ID=Phyra49427.1;Parent=Phyra49427;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 ensembl protein_coding_gene 159933 163067 . + . ID=Phyra71769;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_46000003;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 159933 163067 . + . ID=Phyra71769;Parent=Phyra71769;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 159933 163067 . + 0 ID=Phyra71769;Parent=Phyra71769;rank=1 scaffold_46 . exon 159933 163067 . + . ID=Phyra71769.1;Parent=Phyra71769;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 165778 167104 . + . ID=Phyra71770;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_46000004;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 165778 167104 . + . ID=Phyra71770;Parent=Phyra71770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 165778 165822 . + 0 ID=Phyra71770;Parent=Phyra71770;rank=1 scaffold_46 . exon 165778 165822 . + . ID=Phyra71770.1;Parent=Phyra71770;constitutive=1;rank=1 scaffold_46 . CDS 165900 166013 . + 0 ID=Phyra71770;Parent=Phyra71770;rank=2 scaffold_46 . exon 165900 166013 . + . ID=Phyra71770.2;Parent=Phyra71770;constitutive=1;rank=2 scaffold_46 . CDS 166088 167104 . + 0 ID=Phyra71770;Parent=Phyra71770;rank=3 scaffold_46 . exon 166088 167104 . + . ID=Phyra71770.3;Parent=Phyra71770;constitutive=1;rank=3 scaffold_46 ensembl protein_coding_gene 164719 165246 . + . ID=Phyra80122;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000033;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 164719 165246 . + . ID=Phyra80122;Parent=Phyra80122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 164719 165246 . + 0 ID=Phyra80122;Parent=Phyra80122;rank=1 scaffold_46 . exon 164719 165246 . + . ID=Phyra80122.1;Parent=Phyra80122;constitutive=1;rank=1 scaffold_46 . repeat_region 168793 168842 . ? . description=dust scaffold_46 . biological_region 176558 176563 0.999 - . logic_name=eponine scaffold_46 . biological_region 176614 176619 0.999 + . logic_name=eponine scaffold_46 . biological_region 177311 177316 0.999 + . logic_name=eponine scaffold_46 . biological_region 177358 177364 0.999 + . logic_name=eponine scaffold_46 ensembl protein_coding_gene 170551 171977 . + . ID=Phyra71772;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_46000006;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 170551 171977 . + . ID=Phyra71772;Parent=Phyra71772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 170551 170631 . + 0 ID=Phyra71772;Parent=Phyra71772;rank=1 scaffold_46 . exon 170551 170631 . + . ID=Phyra71772.1;Parent=Phyra71772;constitutive=1;rank=1 scaffold_46 . CDS 170696 171660 . + 0 ID=Phyra71772;Parent=Phyra71772;rank=2 scaffold_46 . exon 170696 171660 . + . ID=Phyra71772.2;Parent=Phyra71772;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_46 . CDS 171734 171977 . + 0 ID=Phyra71772;Parent=Phyra71772;rank=3 scaffold_46 . exon 171734 171977 . + . ID=Phyra71772.3;Parent=Phyra71772;constitutive=1;ensembl_phase=2;rank=3 scaffold_46 ensembl protein_coding_gene 172202 172790 . - . ID=Phyra80127;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000038;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 172202 172790 . - . ID=Phyra80127;Parent=Phyra80127;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 172202 172281 . - 0 ID=Phyra80127;Parent=Phyra80127;rank=4 scaffold_46 . exon 172202 172281 . - . ID=Phyra80127.4;Parent=Phyra80127;constitutive=1;ensembl_phase=1;rank=4 scaffold_46 . CDS 172335 172553 . - 0 ID=Phyra80127;Parent=Phyra80127;rank=3 scaffold_46 . exon 172335 172553 . - . ID=Phyra80127.3;Parent=Phyra80127;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_46 . CDS 172622 172685 . - 0 ID=Phyra80127;Parent=Phyra80127;rank=2 scaffold_46 . exon 172622 172685 . - . ID=Phyra80127.2;Parent=Phyra80127;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_46 . CDS 172707 172790 . - 0 ID=Phyra80127;Parent=Phyra80127;rank=1 scaffold_46 . exon 172707 172790 . - . ID=Phyra80127.1;Parent=Phyra80127;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 174279 175159 . - . ID=Phyra80128;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000039;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 174279 175159 . - . ID=Phyra80128;Parent=Phyra80128;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 174279 174357 . - 0 ID=Phyra80128;Parent=Phyra80128;rank=3 scaffold_46 . exon 174279 174357 . - . ID=Phyra80128.3;Parent=Phyra80128;constitutive=1;ensembl_phase=2;rank=3 scaffold_46 . CDS 174430 174829 . - 0 ID=Phyra80128;Parent=Phyra80128;rank=2 scaffold_46 . exon 174430 174829 . - . ID=Phyra80128.2;Parent=Phyra80128;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_46 . CDS 174955 175159 . - 0 ID=Phyra80128;Parent=Phyra80128;rank=1 scaffold_46 . exon 174955 175159 . - . ID=Phyra80128.1;Parent=Phyra80128;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 ensembl protein_coding_gene 176923 178278 . - . ID=Phyra80129;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000040;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 176923 178278 . - . ID=Phyra80129;Parent=Phyra80129;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 176923 178278 . - 0 ID=Phyra80129;Parent=Phyra80129;rank=1 scaffold_46 . exon 176923 178278 . - . ID=Phyra80129.1;Parent=Phyra80129;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 178634 179989 . - . ID=Phyra80130;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000041;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 178634 179989 . - . ID=Phyra80130;Parent=Phyra80130;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 178634 179989 . - 0 ID=Phyra80130;Parent=Phyra80130;rank=1 scaffold_46 . exon 178634 179989 . - . ID=Phyra80130.1;Parent=Phyra80130;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 182785 184152 . + . ID=Phyra80131;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000042;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 182785 184152 . + . ID=Phyra80131;Parent=Phyra80131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 182785 184152 . + 0 ID=Phyra80131;Parent=Phyra80131;rank=1 scaffold_46 . exon 182785 184152 . + . ID=Phyra80131.1;Parent=Phyra80131;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 184542 189650 . - . ID=Phyra95604;biotype=protein_coding;external_name=C_scaffold_46000016;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 184542 189650 . - . ID=Phyra95604;Parent=Phyra95604;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 184542 184982 . - 0 ID=Phyra95604;Parent=Phyra95604;rank=11 scaffold_46 . exon 184542 184982 . - . ID=Phyra95604.11;Parent=Phyra95604;constitutive=1;rank=11 scaffold_46 . CDS 185010 185359 . - 0 ID=Phyra95604;Parent=Phyra95604;rank=10 scaffold_46 . exon 185010 185359 . - . ID=Phyra95604.10;Parent=Phyra95604;constitutive=1;ensembl_phase=1;rank=10 scaffold_46 . CDS 185469 185535 . - 0 ID=Phyra95604;Parent=Phyra95604;rank=9 scaffold_46 . exon 185469 185535 . - . ID=Phyra95604.9;Parent=Phyra95604;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_46 . CDS 185556 185936 . - 0 ID=Phyra95604;Parent=Phyra95604;rank=8 scaffold_46 . exon 185556 185936 . - . ID=Phyra95604.8;Parent=Phyra95604;constitutive=1;rank=8 scaffold_46 . CDS 186009 186231 . - 0 ID=Phyra95604;Parent=Phyra95604;rank=7 scaffold_46 . exon 186009 186231 . - . ID=Phyra95604.7;Parent=Phyra95604;constitutive=1;ensembl_phase=2;rank=7 scaffold_46 . CDS 186379 186724 . - 0 ID=Phyra95604;Parent=Phyra95604;rank=6 scaffold_46 . exon 186379 186724 . - . ID=Phyra95604.6;Parent=Phyra95604;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_46 . CDS 186818 187166 . - 0 ID=Phyra95604;Parent=Phyra95604;rank=5 scaffold_46 . exon 186818 187166 . - . ID=Phyra95604.5;Parent=Phyra95604;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_46 . CDS 187455 187864 . - 0 ID=Phyra95604;Parent=Phyra95604;rank=4 scaffold_46 . CDS 187919 188095 . - 0 ID=Phyra95604;Parent=Phyra95604;rank=3 scaffold_46 . CDS 188450 189084 . - 0 ID=Phyra95604;Parent=Phyra95604;rank=2 scaffold_46 . CDS 189196 189650 . - 0 ID=Phyra95604;Parent=Phyra95604;rank=1 scaffold_46 . biological_region 188935 188938 0.999 - . logic_name=eponine scaffold_46 . biological_region 189499 189503 0.999 + . logic_name=eponine scaffold_46 . biological_region 189559 189560 0.999 + . logic_name=eponine scaffold_46 . repeat_region 190501 190511 . ? . description=dust scaffold_46 . biological_region 193138 193142 0.999 + . logic_name=eponine scaffold_46 . biological_region 193194 193198 0.999 - . logic_name=eponine scaffold_46 . biological_region 193384 193385 0.999 + . logic_name=eponine scaffold_46 . biological_region 193451 193455 0.999 + . logic_name=eponine scaffold_46 . biological_region 193503 193506 0.999 + . logic_name=eponine scaffold_46 . repeat_region 194056 194089 . ? . description=trf scaffold_46 . repeat_region 194311 194351 . ? . description=trf scaffold_46 . repeat_region 194316 194351 . ? . description=trf scaffold_46 . biological_region 194362 194369 0.999 - . logic_name=eponine scaffold_46 . biological_region 196026 196030 0.999 + . logic_name=eponine scaffold_46 . biological_region 196082 196086 0.999 - . logic_name=eponine scaffold_46 . repeat_region 196158 197136 . ? . description=dust scaffold_46 . repeat_region 197137 207359 . ? . description=dust scaffold_46 ensembl protein_coding_gene 192823 193608 . - . ID=Phyra80133;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000044;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 192823 193608 . - . ID=Phyra80133;Parent=Phyra80133;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 192823 193608 . - 0 ID=Phyra80133;Parent=Phyra80133;rank=1 scaffold_46 . exon 192823 193608 . - . ID=Phyra80133.1;Parent=Phyra80133;constitutive=1;rank=1 scaffold_46 . exon 187455 187864 . - . ID=Phyra95604.4;Parent=Phyra95604;constitutive=1;ensembl_phase=1;rank=4 scaffold_46 . exon 187919 188095 . - . ID=Phyra95604.3;Parent=Phyra95604;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_46 . exon 188450 189084 . - . ID=Phyra95604.2;Parent=Phyra95604;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_46 . exon 189196 189650 . - . ID=Phyra95604.1;Parent=Phyra95604;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . repeat_region 197137 207359 . ? . description=dust scaffold_46 . biological_region 207542 207549 0.999 + . logic_name=eponine scaffold_46 . repeat_region 207559 207594 . ? . description=trf scaffold_46 . repeat_region 207559 207599 . ? . description=trf scaffold_46 . repeat_region 207821 207870 . ? . description=trf scaffold_46 . repeat_region 207825 207870 . ? . description=dust scaffold_46 . biological_region 208421 208424 0.999 - . logic_name=eponine scaffold_46 . biological_region 208472 208476 0.999 - . logic_name=eponine scaffold_46 . biological_region 208542 208543 0.999 - . logic_name=eponine scaffold_46 . biological_region 208729 208733 0.999 + . logic_name=eponine scaffold_46 . biological_region 208785 208789 0.999 - . logic_name=eponine scaffold_46 . repeat_region 212377 212411 . ? . description=trf scaffold_46 . repeat_region 213866 213873 . ? . description=dust scaffold_46 ensembl protein_coding_gene 208408 209103 . + . ID=Phyra71773;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_46000007;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 208408 209103 . + . ID=Phyra71773;Parent=Phyra71773;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 208408 209103 . + 0 ID=Phyra71773;Parent=Phyra71773;rank=1 scaffold_46 . exon 208408 209103 . + . ID=Phyra71773.1;Parent=Phyra71773;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 209966 210762 . + . ID=Phyra80135;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000046;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 209966 210762 . + . ID=Phyra80135;Parent=Phyra80135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 209966 210234 . + 0 ID=Phyra80135;Parent=Phyra80135;rank=1 scaffold_46 . exon 209966 210234 . + . ID=Phyra80135.1;Parent=Phyra80135;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . CDS 210313 210419 . + 0 ID=Phyra80135;Parent=Phyra80135;rank=2 scaffold_46 . exon 210313 210419 . + . ID=Phyra80135.2;Parent=Phyra80135;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 210497 210762 . + 0 ID=Phyra80135;Parent=Phyra80135;rank=3 scaffold_46 . exon 210497 210762 . + . ID=Phyra80135.3;Parent=Phyra80135;constitutive=1;ensembl_phase=1;rank=3 scaffold_46 ensembl protein_coding_gene 210894 213447 . - . ID=Phyra80136;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000047;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 210894 213447 . - . ID=Phyra80136;Parent=Phyra80136;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 210894 211429 . - 0 ID=Phyra80136;Parent=Phyra80136;rank=3 scaffold_46 . exon 210894 211429 . - . ID=Phyra80136.3;Parent=Phyra80136;constitutive=1;ensembl_phase=1;rank=3 scaffold_46 . CDS 211496 211830 . - 0 ID=Phyra80136;Parent=Phyra80136;rank=2 scaffold_46 . exon 211496 211830 . - . ID=Phyra80136.2;Parent=Phyra80136;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 212018 213447 . - 0 ID=Phyra80136;Parent=Phyra80136;rank=1 scaffold_46 . exon 212018 213447 . - . ID=Phyra80136.1;Parent=Phyra80136;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 ensembl protein_coding_gene 213957 217184 . - . ID=Phyra80137;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000048;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 213957 217184 . - . ID=Phyra80137;Parent=Phyra80137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 213957 214465 . - 0 ID=Phyra80137;Parent=Phyra80137;rank=7 scaffold_46 . exon 213957 214465 . - . ID=Phyra80137.7;Parent=Phyra80137;constitutive=1;ensembl_phase=1;rank=7 scaffold_46 . CDS 214827 215898 . - 0 ID=Phyra80137;Parent=Phyra80137;rank=6 scaffold_46 . exon 214827 215898 . - . ID=Phyra80137.6;Parent=Phyra80137;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_46 . CDS 215972 215986 . - 0 ID=Phyra80137;Parent=Phyra80137;rank=5 scaffold_46 . exon 215972 215986 . - . ID=Phyra80137.5;Parent=Phyra80137;constitutive=1;rank=5 scaffold_46 . CDS 216074 216300 . - 0 ID=Phyra80137;Parent=Phyra80137;rank=4 scaffold_46 . exon 216074 216300 . - . ID=Phyra80137.4;Parent=Phyra80137;constitutive=1;ensembl_phase=1;rank=4 scaffold_46 . CDS 216371 216647 . - 0 ID=Phyra80137;Parent=Phyra80137;rank=3 scaffold_46 . exon 216371 216647 . - . ID=Phyra80137.3;Parent=Phyra80137;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_46 . CDS 216715 216855 . - 0 ID=Phyra80137;Parent=Phyra80137;rank=2 scaffold_46 . exon 216715 216855 . - . ID=Phyra80137.2;Parent=Phyra80137;constitutive=1;rank=2 scaffold_46 . CDS 216936 217184 . - 0 ID=Phyra80137;Parent=Phyra80137;rank=1 scaffold_46 . exon 216936 217184 . - . ID=Phyra80137.1;Parent=Phyra80137;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 217979 221650 . + . ID=Phyra80138;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000049;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 217979 221650 . + . ID=Phyra80138;Parent=Phyra80138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 217979 221650 . + 0 ID=Phyra80138;Parent=Phyra80138;rank=1 scaffold_46 . exon 217979 221650 . + . ID=Phyra80138.1;Parent=Phyra80138;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 222701 223219 . + . ID=Phyra80139;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000050;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 222701 223219 . + . ID=Phyra80139;Parent=Phyra80139;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 222701 223219 . + 0 ID=Phyra80139;Parent=Phyra80139;rank=1 scaffold_46 . exon 222701 223219 . + . ID=Phyra80139.1;Parent=Phyra80139;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 223573 225432 . + . ID=Phyra80140;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000051;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 223573 225432 . + . ID=Phyra80140;Parent=Phyra80140;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 223573 225432 . + 0 ID=Phyra80140;Parent=Phyra80140;rank=1 scaffold_46 . exon 223573 225432 . + . ID=Phyra80140.1;Parent=Phyra80140;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 225631 230132 . - . ID=Phyra95607;biotype=protein_coding;external_name=C_scaffold_46000019;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 225631 230132 . - . ID=Phyra95607;Parent=Phyra95607;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 225631 225997 . - 0 ID=Phyra95607;Parent=Phyra95607;rank=12 scaffold_46 . exon 225631 225997 . - . ID=Phyra95607.12;Parent=Phyra95607;constitutive=1;ensembl_phase=2;rank=12 scaffold_46 . CDS 226063 226261 . - 0 ID=Phyra95607;Parent=Phyra95607;rank=11 scaffold_46 . exon 226063 226261 . - . ID=Phyra95607.11;Parent=Phyra95607;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_46 . CDS 226334 226977 . - 0 ID=Phyra95607;Parent=Phyra95607;rank=10 scaffold_46 . exon 226334 226977 . - . ID=Phyra95607.10;Parent=Phyra95607;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_46 . CDS 227134 227341 . - 0 ID=Phyra95607;Parent=Phyra95607;rank=9 scaffold_46 . CDS 227471 228619 . - 0 ID=Phyra95607;Parent=Phyra95607;rank=8 scaffold_46 . CDS 228641 228783 . - 0 ID=Phyra95607;Parent=Phyra95607;rank=7 scaffold_46 . CDS 228805 228881 . - 0 ID=Phyra95607;Parent=Phyra95607;rank=6 scaffold_46 . CDS 228930 229030 . - 0 ID=Phyra95607;Parent=Phyra95607;rank=5 scaffold_46 . CDS 229106 229185 . - 0 ID=Phyra95607;Parent=Phyra95607;rank=4 scaffold_46 . CDS 229246 229450 . - 0 ID=Phyra95607;Parent=Phyra95607;rank=3 scaffold_46 . CDS 229583 229656 . - 0 ID=Phyra95607;Parent=Phyra95607;rank=2 scaffold_46 . CDS 229744 230132 . - 0 ID=Phyra95607;Parent=Phyra95607;rank=1 scaffold_46 . repeat_region 234376 234392 . ? . description=dust scaffold_46 . biological_region 235074 235075 0.999 - . logic_name=eponine scaffold_46 ensembl protein_coding_gene 231362 234272 . - . ID=Phyra80142;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000053;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 231362 234272 . - . ID=Phyra80142;Parent=Phyra80142;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 231362 231377 . - 0 ID=Phyra80142;Parent=Phyra80142;rank=2 scaffold_46 . exon 231362 231377 . - . ID=Phyra80142.2;Parent=Phyra80142;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 231496 234272 . - 0 ID=Phyra80142;Parent=Phyra80142;rank=1 scaffold_46 . exon 231496 234272 . - . ID=Phyra80142.1;Parent=Phyra80142;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 ensembl protein_coding_gene 234790 235200 . - . ID=Phyra80143;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000054;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 234790 235200 . - . ID=Phyra80143;Parent=Phyra80143;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 234790 235200 . - 0 ID=Phyra80143;Parent=Phyra80143;rank=1 scaffold_46 . exon 234790 235200 . - . ID=Phyra80143.1;Parent=Phyra80143;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 235901 237026 . - . ID=Phyra80144;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000055;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 235901 237026 . - . ID=Phyra80144;Parent=Phyra80144;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 235901 236073 . - 0 ID=Phyra80144;Parent=Phyra80144;rank=3 scaffold_46 . exon 235901 236073 . - . ID=Phyra80144.3;Parent=Phyra80144;constitutive=1;ensembl_phase=1;rank=3 scaffold_46 . CDS 236134 236173 . - 0 ID=Phyra80144;Parent=Phyra80144;rank=2 scaffold_46 . exon 236134 236173 . - . ID=Phyra80144.2;Parent=Phyra80144;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_46 . CDS 236244 237026 . - 0 ID=Phyra80144;Parent=Phyra80144;rank=1 scaffold_46 . exon 236244 237026 . - . ID=Phyra80144.1;Parent=Phyra80144;constitutive=1;rank=1 scaffold_46 . exon 227134 227341 . - . ID=Phyra95607.9;Parent=Phyra95607;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_46 . exon 227471 228619 . - . ID=Phyra95607.8;Parent=Phyra95607;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_46 . exon 228641 228783 . - . ID=Phyra95607.7;Parent=Phyra95607;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_46 . exon 228805 228881 . - . ID=Phyra95607.6;Parent=Phyra95607;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_46 . exon 228930 229030 . - . ID=Phyra95607.5;Parent=Phyra95607;constitutive=1;ensembl_phase=1;rank=5 scaffold_46 . exon 229106 229185 . - . ID=Phyra95607.4;Parent=Phyra95607;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_46 . exon 229246 229450 . - . ID=Phyra95607.3;Parent=Phyra95607;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_46 . exon 229583 229656 . - . ID=Phyra95607.2;Parent=Phyra95607;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_46 . exon 229744 230132 . - . ID=Phyra95607.1;Parent=Phyra95607;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . repeat_region 245822 245861 . ? . description=trf scaffold_46 ensembl protein_coding_gene 240548 241906 . - . ID=Phyra80146;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000057;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 240548 241906 . - . ID=Phyra80146;Parent=Phyra80146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 240548 240636 . - 0 ID=Phyra80146;Parent=Phyra80146;rank=6 scaffold_46 . exon 240548 240636 . - . ID=Phyra80146.6;Parent=Phyra80146;constitutive=1;ensembl_phase=1;rank=6 scaffold_46 . CDS 240699 240765 . - 0 ID=Phyra80146;Parent=Phyra80146;rank=5 scaffold_46 . exon 240699 240765 . - . ID=Phyra80146.5;Parent=Phyra80146;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_46 . CDS 240842 241003 . - 0 ID=Phyra80146;Parent=Phyra80146;rank=4 scaffold_46 . exon 240842 241003 . - . ID=Phyra80146.4;Parent=Phyra80146;constitutive=1;rank=4 scaffold_46 . CDS 241063 241107 . - 0 ID=Phyra80146;Parent=Phyra80146;rank=3 scaffold_46 . exon 241063 241107 . - . ID=Phyra80146.3;Parent=Phyra80146;constitutive=1;rank=3 scaffold_46 . CDS 241173 241324 . - 0 ID=Phyra80146;Parent=Phyra80146;rank=2 scaffold_46 . exon 241173 241324 . - . ID=Phyra80146.2;Parent=Phyra80146;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 241387 241906 . - 0 ID=Phyra80146;Parent=Phyra80146;rank=1 scaffold_46 . exon 241387 241906 . - . ID=Phyra80146.1;Parent=Phyra80146;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 ensembl protein_coding_gene 237172 240320 . + . ID=Phyra95609;biotype=protein_coding;external_name=C_scaffold_46000021;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 237172 240320 . + . ID=Phyra95609;Parent=Phyra95609;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 237172 237585 . + 0 ID=Phyra95609;Parent=Phyra95609;rank=1 scaffold_46 . exon 237172 237585 . + . ID=Phyra95609.1;Parent=Phyra95609;constitutive=1;rank=1 scaffold_46 . CDS 237616 238095 . + 0 ID=Phyra95609;Parent=Phyra95609;rank=2 scaffold_46 . exon 237616 238095 . + . ID=Phyra95609.2;Parent=Phyra95609;constitutive=1;rank=2 scaffold_46 . CDS 238198 238755 . + 0 ID=Phyra95609;Parent=Phyra95609;rank=3 scaffold_46 . exon 238198 238755 . + . ID=Phyra95609.3;Parent=Phyra95609;constitutive=1;rank=3 scaffold_46 . CDS 239162 239163 . + 0 ID=Phyra95609;Parent=Phyra95609;rank=4 scaffold_46 . exon 239162 239163 . + . ID=Phyra95609.4;Parent=Phyra95609;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_46 . CDS 239243 239329 . + 0 ID=Phyra95609;Parent=Phyra95609;rank=5 scaffold_46 . exon 239243 239329 . + . ID=Phyra95609.5;Parent=Phyra95609;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_46 . CDS 239396 239419 . + 0 ID=Phyra95609;Parent=Phyra95609;rank=6 scaffold_46 . exon 239396 239419 . + . ID=Phyra95609.6;Parent=Phyra95609;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_46 . CDS 239443 239605 . + 0 ID=Phyra95609;Parent=Phyra95609;rank=7 scaffold_46 . exon 239443 239605 . + . ID=Phyra95609.7;Parent=Phyra95609;constitutive=1;ensembl_phase=2;rank=7 scaffold_46 . CDS 239670 240320 . + 0 ID=Phyra95609;Parent=Phyra95609;rank=8 scaffold_46 . exon 239670 240320 . + . ID=Phyra95609.8;Parent=Phyra95609;constitutive=1;rank=8 scaffold_46 . repeat_region 247949 247959 . ? . description=dust scaffold_46 . repeat_region 248922 248929 . ? . description=dust scaffold_46 . repeat_region 249107 249115 . ? . description=dust scaffold_46 . repeat_region 250055 260290 . ? . description=dust scaffold_46 ensembl protein_coding_gene 248432 248887 . - . ID=Phyra80147;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000058;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 248432 248887 . - . ID=Phyra80147;Parent=Phyra80147;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 248432 248887 . - 0 ID=Phyra80147;Parent=Phyra80147;rank=1 scaffold_46 . exon 248432 248887 . - . ID=Phyra80147.1;Parent=Phyra80147;constitutive=1;rank=1 scaffold_46 . repeat_region 262446 262465 . ? . description=trf scaffold_46 . repeat_region 263897 263941 . ? . description=trf scaffold_46 . repeat_region 268570 268582 . ? . description=dust scaffold_46 . repeat_region 269583 269593 . ? . description=dust scaffold_46 . repeat_region 272306 272314 . ? . description=dust scaffold_46 . repeat_region 272463 272471 . ? . description=dust scaffold_46 . repeat_region 272969 272981 . ? . description=dust scaffold_46 . biological_region 273359 273363 0.999 - . logic_name=eponine scaffold_46 . biological_region 275542 275544 0.999 - . logic_name=eponine scaffold_46 . biological_region 275795 275799 0.999 + . logic_name=eponine scaffold_46 ensembl protein_coding_gene 274512 276800 . + . ID=Phyra80148;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000059;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 274512 276800 . + . ID=Phyra80148;Parent=Phyra80148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 274512 276800 . + 0 ID=Phyra80148;Parent=Phyra80148;rank=1 scaffold_46 . exon 274512 276800 . + . ID=Phyra80148.1;Parent=Phyra80148;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 283175 283803 . - . ID=Phyra49345;biotype=protein_coding;external_name=gwEuk.46.10.1;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 283175 283803 . - . ID=Phyra49345;Parent=Phyra49345;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 283175 283407 . - 0 ID=Phyra49345;Parent=Phyra49345;rank=2 scaffold_46 . exon 283175 283407 . - . ID=Phyra49345.2;Parent=Phyra49345;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 283419 283803 . - 0 ID=Phyra49345;Parent=Phyra49345;rank=1 scaffold_46 . exon 283419 283803 . - . ID=Phyra49345.1;Parent=Phyra49345;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 ensembl protein_coding_gene 277033 277826 . - . ID=Phyra80149;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000060;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 277033 277826 . - . ID=Phyra80149;Parent=Phyra80149;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 277033 277638 . - 0 ID=Phyra80149;Parent=Phyra80149;rank=2 scaffold_46 . exon 277033 277638 . - . ID=Phyra80149.2;Parent=Phyra80149;constitutive=1;rank=2 scaffold_46 . CDS 277779 277826 . - 0 ID=Phyra80149;Parent=Phyra80149;rank=1 scaffold_46 . exon 277779 277826 . - . ID=Phyra80149.1;Parent=Phyra80149;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 278769 280062 . - . ID=Phyra80150;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000061;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 278769 280062 . - . ID=Phyra80150;Parent=Phyra80150;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 278769 278797 . - 0 ID=Phyra80150;Parent=Phyra80150;rank=4 scaffold_46 . exon 278769 278797 . - . ID=Phyra80150.4;Parent=Phyra80150;constitutive=1;ensembl_phase=1;rank=4 scaffold_46 . CDS 278947 279195 . - 0 ID=Phyra80150;Parent=Phyra80150;rank=3 scaffold_46 . exon 278947 279195 . - . ID=Phyra80150.3;Parent=Phyra80150;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_46 . CDS 279491 279817 . - 0 ID=Phyra80150;Parent=Phyra80150;rank=2 scaffold_46 . exon 279491 279817 . - . ID=Phyra80150.2;Parent=Phyra80150;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 279894 280062 . - 0 ID=Phyra80150;Parent=Phyra80150;rank=1 scaffold_46 . exon 279894 280062 . - . ID=Phyra80150.1;Parent=Phyra80150;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 ensembl protein_coding_gene 284455 286816 . + . ID=Phyra95611;biotype=protein_coding;external_name=C_scaffold_46000023;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 284455 286816 . + . ID=Phyra95611;Parent=Phyra95611;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 284455 284976 . + 0 ID=Phyra95611;Parent=Phyra95611;rank=1 scaffold_46 . exon 284455 284976 . + . ID=Phyra95611.1;Parent=Phyra95611;constitutive=1;rank=1 scaffold_46 . CDS 285088 285178 . + 0 ID=Phyra95611;Parent=Phyra95611;rank=2 scaffold_46 . exon 285088 285178 . + . ID=Phyra95611.2;Parent=Phyra95611;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_46 . CDS 285203 285437 . + 0 ID=Phyra95611;Parent=Phyra95611;rank=3 scaffold_46 . exon 285203 285437 . + . ID=Phyra95611.3;Parent=Phyra95611;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_46 . CDS 285617 285715 . + 0 ID=Phyra95611;Parent=Phyra95611;rank=4 scaffold_46 . exon 285617 285715 . + . ID=Phyra95611.4;Parent=Phyra95611;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_46 . CDS 285783 285861 . + 0 ID=Phyra95611;Parent=Phyra95611;rank=5 scaffold_46 . exon 285783 285861 . + . ID=Phyra95611.5;Parent=Phyra95611;constitutive=1;ensembl_phase=2;rank=5 scaffold_46 . CDS 285930 286073 . + 0 ID=Phyra95611;Parent=Phyra95611;rank=6 scaffold_46 . CDS 286142 286816 . + 0 ID=Phyra95611;Parent=Phyra95611;rank=7 scaffold_46 . repeat_region 287763 287770 . ? . description=dust scaffold_46 . repeat_region 287941 287948 . ? . description=dust scaffold_46 . biological_region 288625 288631 0.999 + . logic_name=eponine scaffold_46 . biological_region 289280 289281 0.999 - . logic_name=eponine scaffold_46 . biological_region 289867 289872 0.999 + . logic_name=eponine scaffold_46 . biological_region 290860 290860 0.999 - . logic_name=eponine scaffold_46 . repeat_region 292775 292800 . ? . description=trf scaffold_46 . biological_region 293098 293100 0.999 - . logic_name=eponine scaffold_46 . biological_region 293151 293153 0.999 - . logic_name=eponine scaffold_46 . repeat_region 295111 295130 . ? . description=trf scaffold_46 ensembl protein_coding_gene 288009 290594 . + . ID=Phyra80153;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000064;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 288009 290594 . + . ID=Phyra80153;Parent=Phyra80153;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 288009 290594 . + 0 ID=Phyra80153;Parent=Phyra80153;rank=1 scaffold_46 . exon 288009 290594 . + . ID=Phyra80153.1;Parent=Phyra80153;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 290771 292849 . + . ID=Phyra80154;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000065;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 290771 292849 . + . ID=Phyra80154;Parent=Phyra80154;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 290771 292849 . + 0 ID=Phyra80154;Parent=Phyra80154;rank=1 scaffold_46 . exon 290771 292849 . + . ID=Phyra80154.1;Parent=Phyra80154;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 293177 294128 . - . ID=Phyra80155;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000066;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 293177 294128 . - . ID=Phyra80155;Parent=Phyra80155;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 293177 293193 . - 0 ID=Phyra80155;Parent=Phyra80155;rank=2 scaffold_46 . exon 293177 293193 . - . ID=Phyra80155.2;Parent=Phyra80155;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 293237 294128 . - 0 ID=Phyra80155;Parent=Phyra80155;rank=1 scaffold_46 . exon 293237 294128 . - . ID=Phyra80155.1;Parent=Phyra80155;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . exon 285930 286073 . + . ID=Phyra95611.6;Parent=Phyra95611;constitutive=1;rank=6 scaffold_46 . exon 286142 286816 . + . ID=Phyra95611.7;Parent=Phyra95611;constitutive=1;rank=7 scaffold_46 ensembl protein_coding_gene 296456 296908 . + . ID=Phyra80156;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000067;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 296456 296908 . + . ID=Phyra80156;Parent=Phyra80156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 296456 296908 . + 0 ID=Phyra80156;Parent=Phyra80156;rank=1 scaffold_46 . exon 296456 296908 . + . ID=Phyra80156.1;Parent=Phyra80156;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 299623 300042 . - . ID=Phyra80157;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000068;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 299623 300042 . - . ID=Phyra80157;Parent=Phyra80157;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 299623 300042 . - 0 ID=Phyra80157;Parent=Phyra80157;rank=1 scaffold_46 . exon 299623 300042 . - . ID=Phyra80157.1;Parent=Phyra80157;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 304991 305449 . - . ID=Phyra80158;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000069;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 304991 305449 . - . ID=Phyra80158;Parent=Phyra80158;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 304991 305449 . - 0 ID=Phyra80158;Parent=Phyra80158;rank=1 scaffold_46 . exon 304991 305449 . - . ID=Phyra80158.1;Parent=Phyra80158;constitutive=1;rank=1 scaffold_46 . repeat_region 305642 305661 . ? . description=trf scaffold_46 ensembl protein_coding_gene 307425 307904 . + . ID=Phyra80159;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000070;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 307425 307904 . + . ID=Phyra80159;Parent=Phyra80159;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 307425 307904 . + 0 ID=Phyra80159;Parent=Phyra80159;rank=1 scaffold_46 . exon 307425 307904 . + . ID=Phyra80159.1;Parent=Phyra80159;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 308092 319721 . - . ID=Phyra80160;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000071;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 308092 319721 . - . ID=Phyra80160;Parent=Phyra80160;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 308092 319566 . - 0 ID=Phyra80160;Parent=Phyra80160;rank=2 scaffold_46 . exon 308092 319566 . - . ID=Phyra80160.2;Parent=Phyra80160;constitutive=1;rank=2 scaffold_46 . CDS 319614 319721 . - 0 ID=Phyra80160;Parent=Phyra80160;rank=1 scaffold_46 . biological_region 320082 320086 0.999 + . logic_name=eponine scaffold_46 . biological_region 320301 320304 0.999 + . logic_name=eponine scaffold_46 . repeat_region 323263 323270 . ? . description=dust scaffold_46 . biological_region 323994 324000 0.999 + . logic_name=eponine scaffold_46 . biological_region 324699 324703 0.999 + . logic_name=eponine scaffold_46 ensembl protein_coding_gene 323710 324387 . + . ID=Phyra71774;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_46000008;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 323710 324387 . + . ID=Phyra71774;Parent=Phyra71774;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 323710 324387 . + 0 ID=Phyra71774;Parent=Phyra71774;rank=1 scaffold_46 . exon 323710 324387 . + . ID=Phyra71774.1;Parent=Phyra71774;constitutive=1;rank=1 scaffold_46 . exon 319614 319721 . - . ID=Phyra80160.1;Parent=Phyra80160;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 319909 323455 . - . ID=Phyra80161;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000072;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 319909 323455 . - . ID=Phyra80161;Parent=Phyra80161;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 319909 320610 . - 0 ID=Phyra80161;Parent=Phyra80161;rank=8 scaffold_46 . exon 319909 320610 . - . ID=Phyra80161.8;Parent=Phyra80161;constitutive=1;rank=8 scaffold_46 . CDS 320680 320741 . - 0 ID=Phyra80161;Parent=Phyra80161;rank=7 scaffold_46 . exon 320680 320741 . - . ID=Phyra80161.7;Parent=Phyra80161;constitutive=1;ensembl_phase=1;rank=7 scaffold_46 . CDS 320801 320867 . - 0 ID=Phyra80161;Parent=Phyra80161;rank=6 scaffold_46 . exon 320801 320867 . - . ID=Phyra80161.6;Parent=Phyra80161;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_46 . CDS 320966 321477 . - 0 ID=Phyra80161;Parent=Phyra80161;rank=5 scaffold_46 . exon 320966 321477 . - . ID=Phyra80161.5;Parent=Phyra80161;constitutive=1;ensembl_phase=1;rank=5 scaffold_46 . CDS 321533 322163 . - 0 ID=Phyra80161;Parent=Phyra80161;rank=4 scaffold_46 . exon 321533 322163 . - . ID=Phyra80161.4;Parent=Phyra80161;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_46 . CDS 322238 322940 . - 0 ID=Phyra80161;Parent=Phyra80161;rank=3 scaffold_46 . exon 322238 322940 . - . ID=Phyra80161.3;Parent=Phyra80161;constitutive=1;ensembl_phase=2;rank=3 scaffold_46 . CDS 323003 323254 . - 0 ID=Phyra80161;Parent=Phyra80161;rank=2 scaffold_46 . exon 323003 323254 . - . ID=Phyra80161.2;Parent=Phyra80161;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_46 . CDS 323328 323455 . - 0 ID=Phyra80161;Parent=Phyra80161;rank=1 scaffold_46 . exon 323328 323455 . - . ID=Phyra80161.1;Parent=Phyra80161;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 ensembl protein_coding_gene 324493 325380 . - . ID=Phyra80163;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000074;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 324493 325380 . - . ID=Phyra80163;Parent=Phyra80163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 324493 324578 . - 0 ID=Phyra80163;Parent=Phyra80163;rank=3 scaffold_46 . exon 324493 324578 . - . ID=Phyra80163.3;Parent=Phyra80163;constitutive=1;ensembl_phase=1;rank=3 scaffold_46 . CDS 324640 324921 . - 0 ID=Phyra80163;Parent=Phyra80163;rank=2 scaffold_46 . exon 324640 324921 . - . ID=Phyra80163.2;Parent=Phyra80163;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 324978 325380 . - 0 ID=Phyra80163;Parent=Phyra80163;rank=1 scaffold_46 . exon 324978 325380 . - . ID=Phyra80163.1;Parent=Phyra80163;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . repeat_region 331704 331732 . ? . description=trf scaffold_46 . repeat_region 333271 333307 . ? . description=trf scaffold_46 ensembl protein_coding_gene 326376 327332 . + . ID=Phyra80164;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000075;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 326376 327332 . + . ID=Phyra80164;Parent=Phyra80164;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 326376 327332 . + 0 ID=Phyra80164;Parent=Phyra80164;rank=1 scaffold_46 . exon 326376 327332 . + . ID=Phyra80164.1;Parent=Phyra80164;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 327740 328740 . - . ID=Phyra80165;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000076;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 327740 328740 . - . ID=Phyra80165;Parent=Phyra80165;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 327740 328505 . - 0 ID=Phyra80165;Parent=Phyra80165;rank=2 scaffold_46 . exon 327740 328505 . - . ID=Phyra80165.2;Parent=Phyra80165;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 328637 328740 . - 0 ID=Phyra80165;Parent=Phyra80165;rank=1 scaffold_46 . exon 328637 328740 . - . ID=Phyra80165.1;Parent=Phyra80165;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 ensembl protein_coding_gene 329499 332639 . - . ID=Phyra95613;biotype=protein_coding;external_name=C_scaffold_46000025;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 329499 332639 . - . ID=Phyra95613;Parent=Phyra95613;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 329499 329724 . - 0 ID=Phyra95613;Parent=Phyra95613;rank=9 scaffold_46 . exon 329499 329724 . - . ID=Phyra95613.9;Parent=Phyra95613;constitutive=1;ensembl_phase=2;rank=9 scaffold_46 . CDS 329950 329981 . - 0 ID=Phyra95613;Parent=Phyra95613;rank=8 scaffold_46 . exon 329950 329981 . - . ID=Phyra95613.8;Parent=Phyra95613;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_46 . CDS 330064 330263 . - 0 ID=Phyra95613;Parent=Phyra95613;rank=7 scaffold_46 . exon 330064 330263 . - . ID=Phyra95613.7;Parent=Phyra95613;constitutive=1;ensembl_phase=1;rank=7 scaffold_46 . CDS 330345 330483 . - 0 ID=Phyra95613;Parent=Phyra95613;rank=6 scaffold_46 . exon 330345 330483 . - . ID=Phyra95613.6;Parent=Phyra95613;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_46 . CDS 330559 330804 . - 0 ID=Phyra95613;Parent=Phyra95613;rank=5 scaffold_46 . exon 330559 330804 . - . ID=Phyra95613.5;Parent=Phyra95613;constitutive=1;rank=5 scaffold_46 . CDS 330839 330923 . - 0 ID=Phyra95613;Parent=Phyra95613;rank=4 scaffold_46 . exon 330839 330923 . - . ID=Phyra95613.4;Parent=Phyra95613;constitutive=1;ensembl_phase=2;rank=4 scaffold_46 . CDS 332207 332378 . - 0 ID=Phyra95613;Parent=Phyra95613;rank=3 scaffold_46 . exon 332207 332378 . - . ID=Phyra95613.3;Parent=Phyra95613;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_46 . CDS 332438 332537 . - 0 ID=Phyra95613;Parent=Phyra95613;rank=2 scaffold_46 . exon 332438 332537 . - . ID=Phyra95613.2;Parent=Phyra95613;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_46 . CDS 332607 332639 . - 0 ID=Phyra95613;Parent=Phyra95613;rank=1 scaffold_46 . exon 332607 332639 . - . ID=Phyra95613.1;Parent=Phyra95613;constitutive=1;rank=1 scaffold_46 . biological_region 338663 338664 0.999 + . logic_name=eponine scaffold_46 . repeat_region 340016 340771 . ? . description=dust scaffold_46 . repeat_region 341982 345006 . ? . description=dust scaffold_46 ensembl tRNA_gene 341485 341556 . + . ID=EPrPRAG00000000136;biotype=tRNA;description=tRNA-Gly for anticodon UCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_46 ensembl transcript 341485 341556 . + . ID=EPrPRAT00000000136;Parent=EPrPRAG00000000136;biotype=tRNA;logic_name=ncrna_eg scaffold_46 . exon 341485 341556 . + . ID=EPrPRAE00000000136;Parent=EPrPRAT00000000136;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 336841 339012 . - . ID=Phyra71775;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_46000009;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 336841 339012 . - . ID=Phyra71775;Parent=Phyra71775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 336841 336951 . - 0 ID=Phyra71775;Parent=Phyra71775;rank=2 scaffold_46 . exon 336841 336951 . - . ID=Phyra71775.2;Parent=Phyra71775;constitutive=1;rank=2 scaffold_46 . CDS 337093 339012 . - 0 ID=Phyra71775;Parent=Phyra71775;rank=1 scaffold_46 . exon 337093 339012 . - . ID=Phyra71775.1;Parent=Phyra71775;constitutive=1;rank=1 scaffold_46 . repeat_region 345942 346021 . ? . description=trf scaffold_46 ensembl protein_coding_gene 345076 346599 . + . ID=Phyra80168;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000079;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 345076 346599 . + . ID=Phyra80168;Parent=Phyra80168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 345076 346599 . + 0 ID=Phyra80168;Parent=Phyra80168;rank=1 scaffold_46 . exon 345076 346599 . + . ID=Phyra80168.1;Parent=Phyra80168;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 354575 356027 . - . ID=Phyra80169;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000080;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 354575 356027 . - . ID=Phyra80169;Parent=Phyra80169;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 354575 354798 . - 0 ID=Phyra80169;Parent=Phyra80169;rank=3 scaffold_46 . exon 354575 354798 . - . ID=Phyra80169.3;Parent=Phyra80169;constitutive=1;ensembl_phase=1;rank=3 scaffold_46 . CDS 354866 355865 . - 0 ID=Phyra80169;Parent=Phyra80169;rank=2 scaffold_46 . CDS 355956 356027 . - 0 ID=Phyra80169;Parent=Phyra80169;rank=1 scaffold_46 . biological_region 355045 355047 0.999 - . logic_name=eponine scaffold_46 . biological_region 355100 355103 0.999 + . logic_name=eponine scaffold_46 . repeat_region 356613 356875 . ? . description=dust scaffold_46 . biological_region 357317 357318 0.999 + . logic_name=eponine scaffold_46 . biological_region 358483 358484 0.999 + . logic_name=eponine scaffold_46 . biological_region 358805 358806 0.999 - . logic_name=eponine scaffold_46 . repeat_region 359131 359138 . ? . description=dust scaffold_46 . biological_region 359678 359678 0.999 + . logic_name=eponine scaffold_46 . repeat_region 362608 362615 . ? . description=dust scaffold_46 . repeat_region 364274 364284 . ? . description=dust scaffold_46 . repeat_region 364444 364451 . ? . description=dust scaffold_46 ensembl protein_coding_gene 361433 362143 . + . ID=Phyra49367;biotype=protein_coding;external_name=gwEuk.46.32.1;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 361433 362143 . + . ID=Phyra49367;Parent=Phyra49367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 361433 362143 . + 0 ID=Phyra49367;Parent=Phyra49367;rank=1 scaffold_46 . exon 361433 362143 . + . ID=Phyra49367.1;Parent=Phyra49367;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 358328 359023 . + . ID=Phyra71776;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_46000010;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 358328 359023 . + . ID=Phyra71776;Parent=Phyra71776;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 358328 359023 . + 0 ID=Phyra71776;Parent=Phyra71776;rank=1 scaffold_46 . exon 358328 359023 . + . ID=Phyra71776.1;Parent=Phyra71776;constitutive=1;rank=1 scaffold_46 . exon 354866 355865 . - . ID=Phyra80169.2;Parent=Phyra80169;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_46 . exon 355956 356027 . - . ID=Phyra80169.1;Parent=Phyra80169;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 356927 357400 . - . ID=Phyra80170;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000081;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 356927 357400 . - . ID=Phyra80170;Parent=Phyra80170;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 356927 357058 . - 0 ID=Phyra80170;Parent=Phyra80170;rank=2 scaffold_46 . exon 356927 357058 . - . ID=Phyra80170.2;Parent=Phyra80170;constitutive=1;rank=2 scaffold_46 . CDS 357122 357400 . - 0 ID=Phyra80170;Parent=Phyra80170;rank=1 scaffold_46 . exon 357122 357400 . - . ID=Phyra80170.1;Parent=Phyra80170;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 359611 360597 . + . ID=Phyra80172;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000083;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 359611 360597 . + . ID=Phyra80172;Parent=Phyra80172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 359611 360597 . + 0 ID=Phyra80172;Parent=Phyra80172;rank=1 scaffold_46 . exon 359611 360597 . + . ID=Phyra80172.1;Parent=Phyra80172;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 362803 363804 . + . ID=Phyra80174;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000085;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 362803 363804 . + . ID=Phyra80174;Parent=Phyra80174;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 362803 363804 . + 0 ID=Phyra80174;Parent=Phyra80174;rank=1 scaffold_46 . exon 362803 363804 . + . ID=Phyra80174.1;Parent=Phyra80174;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 365813 366649 . - . ID=Phyra71777;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_46000011;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 365813 366649 . - . ID=Phyra71777;Parent=Phyra71777;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 365813 366649 . - 0 ID=Phyra71777;Parent=Phyra71777;rank=1 scaffold_46 . exon 365813 366649 . - . ID=Phyra71777.1;Parent=Phyra71777;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 367948 368772 . - . ID=Phyra71778;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_46000012;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 367948 368772 . - . ID=Phyra71778;Parent=Phyra71778;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 367948 368772 . - 0 ID=Phyra71778;Parent=Phyra71778;rank=1 scaffold_46 . exon 367948 368772 . - . ID=Phyra71778.1;Parent=Phyra71778;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 370630 371343 . - . ID=Phyra71779;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_46000013;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 370630 371343 . - . ID=Phyra71779;Parent=Phyra71779;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 370630 371343 . - 0 ID=Phyra71779;Parent=Phyra71779;rank=1 scaffold_46 . exon 370630 371343 . - . ID=Phyra71779.1;Parent=Phyra71779;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 365012 365470 . + . ID=Phyra80175;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_46000086;logic_name=jgi_phyra1 scaffold_46 ensembl transcript 365012 365470 . + . ID=Phyra80175;Parent=Phyra80175;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_46 . CDS 365012 365470 . + 0 ID=Phyra80175;Parent=Phyra80175;rank=1 scaffold_46 . exon 365012 365470 . + . ID=Phyra80175.1;Parent=Phyra80175;constitutive=1;rank=1 scaffold_46 . repeat_region 372900 392917 . ? . description=dust scaffold_46 . biological_region 393215 393219 0.999 - . logic_name=eponine scaffold_46 . repeat_region 393465 393491 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_45 1 402062 scaffold_45 . repeat_region 1265 1298 . ? . description=trf scaffold_45 . repeat_region 1603 2401 . ? . description=dust scaffold_45 . biological_region 2872 2872 0.999 - . logic_name=eponine scaffold_45 . repeat_region 4092 5009 . ? . description=dust scaffold_45 . repeat_region 5257 5282 . ? . description=trf scaffold_45 . repeat_region 6462 13446 . ? . description=dust scaffold_45 ensembl protein_coding_gene 116 910 . + . ID=Phyra80002;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000001;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 116 910 . + . ID=Phyra80002;Parent=Phyra80002;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 116 910 . + 0 ID=Phyra80002;Parent=Phyra80002;rank=1 scaffold_45 . exon 116 910 . + . ID=Phyra80002.1;Parent=Phyra80002;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 16422 16763 . + . ID=Phyra80003;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000002;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 16422 16763 . + . ID=Phyra80003;Parent=Phyra80003;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 16422 16763 . + 0 ID=Phyra80003;Parent=Phyra80003;rank=1 scaffold_45 . exon 16422 16763 . + . ID=Phyra80003.1;Parent=Phyra80003;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 17630 18432 . + . ID=Phyra80004;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000003;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 17630 18432 . + . ID=Phyra80004;Parent=Phyra80004;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 17630 18296 . + 0 ID=Phyra80004;Parent=Phyra80004;rank=1 scaffold_45 . exon 17630 18296 . + . ID=Phyra80004.1;Parent=Phyra80004;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . CDS 18392 18432 . + 0 ID=Phyra80004;Parent=Phyra80004;rank=2 scaffold_45 . exon 18392 18432 . + . ID=Phyra80004.2;Parent=Phyra80004;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . repeat_region 20008 20033 . ? . description=trf scaffold_45 . biological_region 27666 27671 0.999 - . logic_name=eponine scaffold_45 . repeat_region 27979 29829 . - . description=Gypsy-2-I_PI-int scaffold_45 . repeat_region 28273 28280 . ? . description=dust scaffold_45 ensembl protein_coding_gene 33714 35053 . - . ID=Phyra80005;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000004;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 33714 35053 . - . ID=Phyra80005;Parent=Phyra80005;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 33714 34007 . - 0 ID=Phyra80005;Parent=Phyra80005;rank=4 scaffold_45 . exon 33714 34007 . - . ID=Phyra80005.4;Parent=Phyra80005;constitutive=1;rank=4 scaffold_45 . CDS 34046 34437 . - 0 ID=Phyra80005;Parent=Phyra80005;rank=3 scaffold_45 . exon 34046 34437 . - . ID=Phyra80005.3;Parent=Phyra80005;constitutive=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 34530 34882 . - 0 ID=Phyra80005;Parent=Phyra80005;rank=2 scaffold_45 . exon 34530 34882 . - . ID=Phyra80005.2;Parent=Phyra80005;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 34974 35053 . - 0 ID=Phyra80005;Parent=Phyra80005;rank=1 scaffold_45 . exon 34974 35053 . - . ID=Phyra80005.1;Parent=Phyra80005;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 ensembl protein_coding_gene 35641 36636 . - . ID=Phyra80006;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000005;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 35641 36636 . - . ID=Phyra80006;Parent=Phyra80006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 35641 36636 . - 0 ID=Phyra80006;Parent=Phyra80006;rank=1 scaffold_45 . exon 35641 36636 . - . ID=Phyra80006.1;Parent=Phyra80006;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 38752 39329 . - . ID=Phyra80007;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000006;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 38752 39329 . - . ID=Phyra80007;Parent=Phyra80007;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 38752 39231 . - 0 ID=Phyra80007;Parent=Phyra80007;rank=2 scaffold_45 . exon 38752 39231 . - . ID=Phyra80007.2;Parent=Phyra80007;constitutive=1;rank=2 scaffold_45 . CDS 39303 39329 . - 0 ID=Phyra80007;Parent=Phyra80007;rank=1 scaffold_45 . repeat_region 44791 44802 . ? . description=dust scaffold_45 . repeat_region 45515 48559 . ? . description=dust scaffold_45 . exon 39303 39329 . - . ID=Phyra80007.1;Parent=Phyra80007;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 40339 42820 . + . ID=Phyra80008;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000007;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 40339 42820 . + . ID=Phyra80008;Parent=Phyra80008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 40339 40424 . + 0 ID=Phyra80008;Parent=Phyra80008;rank=1 scaffold_45 . exon 40339 40424 . + . ID=Phyra80008.1;Parent=Phyra80008;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 40496 40528 . + 0 ID=Phyra80008;Parent=Phyra80008;rank=2 scaffold_45 . exon 40496 40528 . + . ID=Phyra80008.2;Parent=Phyra80008;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_45 . CDS 40600 40982 . + 0 ID=Phyra80008;Parent=Phyra80008;rank=3 scaffold_45 . exon 40600 40982 . + . ID=Phyra80008.3;Parent=Phyra80008;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_45 . CDS 41736 42040 . + 0 ID=Phyra80008;Parent=Phyra80008;rank=4 scaffold_45 . exon 41736 42040 . + . ID=Phyra80008.4;Parent=Phyra80008;constitutive=1;ensembl_phase=1;rank=4 scaffold_45 . CDS 42275 42820 . + 0 ID=Phyra80008;Parent=Phyra80008;rank=5 scaffold_45 . exon 42275 42820 . + . ID=Phyra80008.5;Parent=Phyra80008;constitutive=1;rank=5 scaffold_45 ensembl protein_coding_gene 48818 51322 . - . ID=Phyra80009;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000008;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 48818 51322 . - . ID=Phyra80009;Parent=Phyra80009;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 48818 49363 . - 0 ID=Phyra80009;Parent=Phyra80009;rank=5 scaffold_45 . exon 48818 49363 . - . ID=Phyra80009.5;Parent=Phyra80009;constitutive=1;rank=5 scaffold_45 . CDS 49598 49902 . - 0 ID=Phyra80009;Parent=Phyra80009;rank=4 scaffold_45 . CDS 50656 51038 . - 0 ID=Phyra80009;Parent=Phyra80009;rank=3 scaffold_45 . CDS 51110 51142 . - 0 ID=Phyra80009;Parent=Phyra80009;rank=2 scaffold_45 . CDS 51216 51322 . - 0 ID=Phyra80009;Parent=Phyra80009;rank=1 scaffold_45 . biological_region 51363 51364 0.999 - . logic_name=eponine scaffold_45 . repeat_region 53038 53132 . ? . description=trf scaffold_45 . repeat_region 56670 56694 . ? . description=trf scaffold_45 . biological_region 58262 58263 0.999 - . logic_name=eponine scaffold_45 . exon 49598 49902 . - . ID=Phyra80009.4;Parent=Phyra80009;constitutive=1;ensembl_phase=1;rank=4 scaffold_45 . exon 50656 51038 . - . ID=Phyra80009.3;Parent=Phyra80009;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_45 . exon 51110 51142 . - . ID=Phyra80009.2;Parent=Phyra80009;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_45 . exon 51216 51322 . - . ID=Phyra80009.1;Parent=Phyra80009;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 ensembl protein_coding_gene 55717 58221 . - . ID=Phyra80010;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000009;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 55717 58221 . - . ID=Phyra80010;Parent=Phyra80010;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 55717 56262 . - 0 ID=Phyra80010;Parent=Phyra80010;rank=5 scaffold_45 . exon 55717 56262 . - . ID=Phyra80010.5;Parent=Phyra80010;constitutive=1;rank=5 scaffold_45 . CDS 56497 56801 . - 0 ID=Phyra80010;Parent=Phyra80010;rank=4 scaffold_45 . exon 56497 56801 . - . ID=Phyra80010.4;Parent=Phyra80010;constitutive=1;ensembl_phase=1;rank=4 scaffold_45 . CDS 57555 57937 . - 0 ID=Phyra80010;Parent=Phyra80010;rank=3 scaffold_45 . exon 57555 57937 . - . ID=Phyra80010.3;Parent=Phyra80010;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_45 . CDS 58009 58041 . - 0 ID=Phyra80010;Parent=Phyra80010;rank=2 scaffold_45 . exon 58009 58041 . - . ID=Phyra80010.2;Parent=Phyra80010;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_45 . CDS 58115 58221 . - 0 ID=Phyra80010;Parent=Phyra80010;rank=1 scaffold_45 . exon 58115 58221 . - . ID=Phyra80010.1;Parent=Phyra80010;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . repeat_region 60772 60780 . ? . description=dust scaffold_45 . repeat_region 64950 64981 . ? . description=dust scaffold_45 ensembl protein_coding_gene 60641 61573 . + . ID=Phyra80011;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000010;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 60641 61573 . + . ID=Phyra80011;Parent=Phyra80011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 60641 60735 . + 0 ID=Phyra80011;Parent=Phyra80011;rank=1 scaffold_45 . exon 60641 60735 . + . ID=Phyra80011.1;Parent=Phyra80011;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 60839 61502 . + 0 ID=Phyra80011;Parent=Phyra80011;rank=2 scaffold_45 . exon 60839 61502 . + . ID=Phyra80011.2;Parent=Phyra80011;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 61556 61573 . + 0 ID=Phyra80011;Parent=Phyra80011;rank=3 scaffold_45 . exon 61556 61573 . + . ID=Phyra80011.3;Parent=Phyra80011;constitutive=1;rank=3 scaffold_45 ensembl protein_coding_gene 63341 65459 . - . ID=Phyra80012;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000011;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 63341 65459 . - . ID=Phyra80012;Parent=Phyra80012;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 63341 65336 . - 0 ID=Phyra80012;Parent=Phyra80012;rank=2 scaffold_45 . exon 63341 65336 . - . ID=Phyra80012.2;Parent=Phyra80012;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 65407 65459 . - 0 ID=Phyra80012;Parent=Phyra80012;rank=1 scaffold_45 . exon 65407 65459 . - . ID=Phyra80012.1;Parent=Phyra80012;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 ensembl protein_coding_gene 65684 69070 . + . ID=Phyra80013;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000012;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 65684 69070 . + . ID=Phyra80013;Parent=Phyra80013;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 65684 69070 . + 0 ID=Phyra80013;Parent=Phyra80013;rank=1 scaffold_45 . exon 65684 69070 . + . ID=Phyra80013.1;Parent=Phyra80013;constitutive=1;rank=1 scaffold_45 . repeat_region 71519 71544 . ? . description=trf scaffold_45 . biological_region 73463 73466 0.999 - . logic_name=eponine scaffold_45 . biological_region 73517 73521 0.999 + . logic_name=eponine scaffold_45 . biological_region 73749 73755 0.999 + . logic_name=eponine scaffold_45 . biological_region 73762 73764 0.999 - . logic_name=eponine scaffold_45 ensembl protein_coding_gene 71796 72378 . + . ID=Phyra80014;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000013;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 71796 72378 . + . ID=Phyra80014;Parent=Phyra80014;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 71796 72209 . + 0 ID=Phyra80014;Parent=Phyra80014;rank=1 scaffold_45 . exon 71796 72209 . + . ID=Phyra80014.1;Parent=Phyra80014;constitutive=1;rank=1 scaffold_45 . CDS 72367 72378 . + 0 ID=Phyra80014;Parent=Phyra80014;rank=2 scaffold_45 . exon 72367 72378 . + . ID=Phyra80014.2;Parent=Phyra80014;constitutive=1;rank=2 scaffold_45 ensembl protein_coding_gene 72534 73910 . - . ID=Phyra80015;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000014;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 72534 73910 . - . ID=Phyra80015;Parent=Phyra80015;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 72534 73910 . - 0 ID=Phyra80015;Parent=Phyra80015;rank=1 scaffold_45 . exon 72534 73910 . - . ID=Phyra80015.1;Parent=Phyra80015;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 78453 81204 . + . ID=Phyra80016;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000015;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 78453 81204 . + . ID=Phyra80016;Parent=Phyra80016;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 78453 78600 . + 0 ID=Phyra80016;Parent=Phyra80016;rank=1 scaffold_45 . exon 78453 78600 . + . ID=Phyra80016.1;Parent=Phyra80016;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . CDS 78675 79463 . + 0 ID=Phyra80016;Parent=Phyra80016;rank=2 scaffold_45 . CDS 79510 79530 . + 0 ID=Phyra80016;Parent=Phyra80016;rank=3 scaffold_45 . CDS 79572 81011 . + 0 ID=Phyra80016;Parent=Phyra80016;rank=4 scaffold_45 . CDS 81158 81204 . + 0 ID=Phyra80016;Parent=Phyra80016;rank=5 scaffold_45 . exon 78675 79463 . + . ID=Phyra80016.2;Parent=Phyra80016;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_45 . exon 79510 79530 . + . ID=Phyra80016.3;Parent=Phyra80016;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_45 . exon 79572 81011 . + . ID=Phyra80016.4;Parent=Phyra80016;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_45 . exon 81158 81204 . + . ID=Phyra80016.5;Parent=Phyra80016;constitutive=1;ensembl_phase=1;rank=5 scaffold_45 ensembl protein_coding_gene 84294 86876 . - . ID=Phyra80017;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000016;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 84294 86876 . - . ID=Phyra80017;Parent=Phyra80017;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 84294 86645 . - 0 ID=Phyra80017;Parent=Phyra80017;rank=2 scaffold_45 . exon 84294 86645 . - . ID=Phyra80017.2;Parent=Phyra80017;constitutive=1;rank=2 scaffold_45 . CDS 86709 86876 . - 0 ID=Phyra80017;Parent=Phyra80017;rank=1 scaffold_45 . exon 86709 86876 . - . ID=Phyra80017.1;Parent=Phyra80017;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 87772 94643 . + . ID=Phyra80018;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000017;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 87772 94643 . + . ID=Phyra80018;Parent=Phyra80018;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 87772 93672 . + 0 ID=Phyra80018;Parent=Phyra80018;rank=1 scaffold_45 . exon 87772 93672 . + . ID=Phyra80018.1;Parent=Phyra80018;constitutive=1;rank=1 scaffold_45 . CDS 93903 94643 . + 0 ID=Phyra80018;Parent=Phyra80018;rank=2 scaffold_45 . biological_region 93692 93695 0.999 - . logic_name=eponine scaffold_45 . biological_region 94116 94121 0.999 + . logic_name=eponine scaffold_45 . biological_region 96766 96770 0.999 + . logic_name=eponine scaffold_45 . biological_region 96836 96838 0.999 + . logic_name=eponine scaffold_45 . biological_region 97111 97116 0.999 + . logic_name=eponine scaffold_45 . biological_region 97195 97197 0.999 - . logic_name=eponine scaffold_45 . biological_region 97205 97210 0.999 + . logic_name=eponine scaffold_45 . biological_region 97232 97234 0.999 + . logic_name=eponine scaffold_45 . biological_region 97300 97308 0.999 - . logic_name=eponine scaffold_45 . repeat_region 97494 97616 . ? . description=trf scaffold_45 . exon 93903 94643 . + . ID=Phyra80018.2;Parent=Phyra80018;constitutive=1;rank=2 scaffold_45 ensembl protein_coding_gene 95238 97388 . - . ID=Phyra80019;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000018;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 95238 97388 . - . ID=Phyra80019;Parent=Phyra80019;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 95238 95386 . - 0 ID=Phyra80019;Parent=Phyra80019;rank=4 scaffold_45 . exon 95238 95386 . - . ID=Phyra80019.4;Parent=Phyra80019;constitutive=1;ensembl_phase=1;rank=4 scaffold_45 . CDS 95450 95678 . - 0 ID=Phyra80019;Parent=Phyra80019;rank=3 scaffold_45 . exon 95450 95678 . - . ID=Phyra80019.3;Parent=Phyra80019;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_45 . CDS 95755 95874 . - 0 ID=Phyra80019;Parent=Phyra80019;rank=2 scaffold_45 . exon 95755 95874 . - . ID=Phyra80019.2;Parent=Phyra80019;constitutive=1;rank=2 scaffold_45 . CDS 95934 97388 . - 0 ID=Phyra80019;Parent=Phyra80019;rank=1 scaffold_45 . exon 95934 97388 . - . ID=Phyra80019.1;Parent=Phyra80019;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 98287 101121 . + . ID=Phyra80020;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000019;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 98287 101121 . + . ID=Phyra80020;Parent=Phyra80020;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 98287 101121 . + 0 ID=Phyra80020;Parent=Phyra80020;rank=1 scaffold_45 . exon 98287 101121 . + . ID=Phyra80020.1;Parent=Phyra80020;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 102379 104896 . + . ID=Phyra80021;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000020;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 102379 104896 . + . ID=Phyra80021;Parent=Phyra80021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 102379 102456 . + 0 ID=Phyra80021;Parent=Phyra80021;rank=1 scaffold_45 . exon 102379 102456 . + . ID=Phyra80021.1;Parent=Phyra80021;constitutive=1;rank=1 scaffold_45 . CDS 102517 102629 . + 0 ID=Phyra80021;Parent=Phyra80021;rank=2 scaffold_45 . exon 102517 102629 . + . ID=Phyra80021.2;Parent=Phyra80021;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_45 . CDS 102695 102775 . + 0 ID=Phyra80021;Parent=Phyra80021;rank=3 scaffold_45 . exon 102695 102775 . + . ID=Phyra80021.3;Parent=Phyra80021;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_45 . CDS 102844 102917 . + 0 ID=Phyra80021;Parent=Phyra80021;rank=4 scaffold_45 . exon 102844 102917 . + . ID=Phyra80021.4;Parent=Phyra80021;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_45 . CDS 102996 104269 . + 0 ID=Phyra80021;Parent=Phyra80021;rank=5 scaffold_45 . exon 102996 104269 . + . ID=Phyra80021.5;Parent=Phyra80021;constitutive=1;ensembl_phase=1;rank=5 scaffold_45 . CDS 104353 104445 . + 0 ID=Phyra80021;Parent=Phyra80021;rank=6 scaffold_45 . exon 104353 104445 . + . ID=Phyra80021.6;Parent=Phyra80021;constitutive=1;rank=6 scaffold_45 . CDS 104531 104896 . + 0 ID=Phyra80021;Parent=Phyra80021;rank=7 scaffold_45 . exon 104531 104896 . + . ID=Phyra80021.7;Parent=Phyra80021;constitutive=1;rank=7 scaffold_45 ensembl protein_coding_gene 105327 106076 . - . ID=Phyra80022;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000021;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 105327 106076 . - . ID=Phyra80022;Parent=Phyra80022;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 105327 105753 . - 0 ID=Phyra80022;Parent=Phyra80022;rank=3 scaffold_45 . exon 105327 105753 . - . ID=Phyra80022.3;Parent=Phyra80022;constitutive=1;ensembl_phase=2;rank=3 scaffold_45 . CDS 105823 105899 . - 0 ID=Phyra80022;Parent=Phyra80022;rank=2 scaffold_45 . exon 105823 105899 . - . ID=Phyra80022.2;Parent=Phyra80022;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_45 . CDS 105963 106076 . - 0 ID=Phyra80022;Parent=Phyra80022;rank=1 scaffold_45 . exon 105963 106076 . - . ID=Phyra80022.1;Parent=Phyra80022;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 106588 107560 . + . ID=Phyra80023;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000022;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 106588 107560 . + . ID=Phyra80023;Parent=Phyra80023;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 106588 106646 . + 0 ID=Phyra80023;Parent=Phyra80023;rank=1 scaffold_45 . exon 106588 106646 . + . ID=Phyra80023.1;Parent=Phyra80023;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 106709 107132 . + 0 ID=Phyra80023;Parent=Phyra80023;rank=2 scaffold_45 . exon 106709 107132 . + . ID=Phyra80023.2;Parent=Phyra80023;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 107198 107560 . + 0 ID=Phyra80023;Parent=Phyra80023;rank=3 scaffold_45 . exon 107198 107560 . + . ID=Phyra80023.3;Parent=Phyra80023;constitutive=1;rank=3 scaffold_45 . biological_region 109140 109144 0.999 - . logic_name=eponine scaffold_45 . biological_region 112224 112226 0.999 + . logic_name=eponine scaffold_45 . biological_region 112352 112353 0.999 - . logic_name=eponine scaffold_45 . biological_region 112408 112410 0.999 + . logic_name=eponine scaffold_45 ensembl protein_coding_gene 111384 113060 . - . ID=Phyra80024;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000023;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 111384 113060 . - . ID=Phyra80024;Parent=Phyra80024;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 111384 113060 . - 0 ID=Phyra80024;Parent=Phyra80024;rank=1 scaffold_45 . exon 111384 113060 . - . ID=Phyra80024.1;Parent=Phyra80024;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 118063 119709 . + . ID=Phyra80025;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000024;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 118063 119709 . + . ID=Phyra80025;Parent=Phyra80025;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 118063 119709 . + 0 ID=Phyra80025;Parent=Phyra80025;rank=1 scaffold_45 . exon 118063 119709 . + . ID=Phyra80025.1;Parent=Phyra80025;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 120304 121947 . + . ID=Phyra80026;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000025;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 120304 121947 . + . ID=Phyra80026;Parent=Phyra80026;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 120304 121947 . + 0 ID=Phyra80026;Parent=Phyra80026;rank=1 scaffold_45 . exon 120304 121947 . + . ID=Phyra80026.1;Parent=Phyra80026;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 122198 123892 . - . ID=Phyra80027;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000026;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 122198 123892 . - . ID=Phyra80027;Parent=Phyra80027;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 122198 123892 . - 0 ID=Phyra80027;Parent=Phyra80027;rank=1 scaffold_45 . exon 122198 123892 . - . ID=Phyra80027.1;Parent=Phyra80027;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 124699 127642 . + . ID=Phyra80028;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000027;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 124699 127642 . + . ID=Phyra80028;Parent=Phyra80028;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 124699 126389 . + 0 ID=Phyra80028;Parent=Phyra80028;rank=1 scaffold_45 . exon 124699 126389 . + . ID=Phyra80028.1;Parent=Phyra80028;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 126443 126506 . + 0 ID=Phyra80028;Parent=Phyra80028;rank=2 scaffold_45 . exon 126443 126506 . + . ID=Phyra80028.2;Parent=Phyra80028;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 126716 126987 . + 0 ID=Phyra80028;Parent=Phyra80028;rank=3 scaffold_45 . exon 126716 126987 . + . ID=Phyra80028.3;Parent=Phyra80028;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_45 . CDS 127066 127642 . + 0 ID=Phyra80028;Parent=Phyra80028;rank=4 scaffold_45 . exon 127066 127642 . + . ID=Phyra80028.4;Parent=Phyra80028;constitutive=1;ensembl_phase=2;rank=4 scaffold_45 . biological_region 133210 133213 0.999 + . logic_name=eponine scaffold_45 . biological_region 133260 133262 0.999 - . logic_name=eponine scaffold_45 . biological_region 134298 134300 0.999 + . logic_name=eponine scaffold_45 ensembl protein_coding_gene 127987 128892 . + . ID=Phyra71759;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_45000001;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 127987 128892 . + . ID=Phyra71759;Parent=Phyra71759;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 127987 128892 . + 0 ID=Phyra71759;Parent=Phyra71759;rank=1 scaffold_45 . exon 127987 128892 . + . ID=Phyra71759.1;Parent=Phyra71759;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 129075 130376 . - . ID=Phyra80030;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000029;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 129075 130376 . - . ID=Phyra80030;Parent=Phyra80030;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 129075 130376 . - 0 ID=Phyra80030;Parent=Phyra80030;rank=1 scaffold_45 . exon 129075 130376 . - . ID=Phyra80030.1;Parent=Phyra80030;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 130800 133229 . - . ID=Phyra80031;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000030;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 130800 133229 . - . ID=Phyra80031;Parent=Phyra80031;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 130800 133229 . - 0 ID=Phyra80031;Parent=Phyra80031;rank=1 scaffold_45 . exon 130800 133229 . - . ID=Phyra80031.1;Parent=Phyra80031;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 133411 134508 . - . ID=Phyra80032;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000031;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 133411 134508 . - . ID=Phyra80032;Parent=Phyra80032;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 133411 134508 . - 0 ID=Phyra80032;Parent=Phyra80032;rank=1 scaffold_45 . exon 133411 134508 . - . ID=Phyra80032.1;Parent=Phyra80032;constitutive=1;rank=1 scaffold_45 . repeat_region 146894 146913 . ? . description=trf scaffold_45 ensembl protein_coding_gene 140146 141281 . - . ID=Phyra80033;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000032;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 140146 141281 . - . ID=Phyra80033;Parent=Phyra80033;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 140146 140308 . - 0 ID=Phyra80033;Parent=Phyra80033;rank=4 scaffold_45 . exon 140146 140308 . - . ID=Phyra80033.4;Parent=Phyra80033;constitutive=1;ensembl_phase=2;rank=4 scaffold_45 . CDS 140383 140518 . - 0 ID=Phyra80033;Parent=Phyra80033;rank=3 scaffold_45 . exon 140383 140518 . - . ID=Phyra80033.3;Parent=Phyra80033;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_45 . CDS 140590 140995 . - 0 ID=Phyra80033;Parent=Phyra80033;rank=2 scaffold_45 . exon 140590 140995 . - . ID=Phyra80033.2;Parent=Phyra80033;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_45 . CDS 141081 141281 . - 0 ID=Phyra80033;Parent=Phyra80033;rank=1 scaffold_45 . exon 141081 141281 . - . ID=Phyra80033.1;Parent=Phyra80033;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 141477 142415 . + . ID=Phyra80034;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000033;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 141477 142415 . + . ID=Phyra80034;Parent=Phyra80034;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 141477 142415 . + 0 ID=Phyra80034;Parent=Phyra80034;rank=1 scaffold_45 . exon 141477 142415 . + . ID=Phyra80034.1;Parent=Phyra80034;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 143274 144956 . - . ID=Phyra80035;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000034;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 143274 144956 . - . ID=Phyra80035;Parent=Phyra80035;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 143274 144956 . - 0 ID=Phyra80035;Parent=Phyra80035;rank=1 scaffold_45 . exon 143274 144956 . - . ID=Phyra80035.1;Parent=Phyra80035;constitutive=1;rank=1 scaffold_45 . biological_region 149561 149562 0.999 - . logic_name=eponine scaffold_45 . biological_region 151364 151370 0.999 + . logic_name=eponine scaffold_45 . biological_region 154222 154223 0.999 - . logic_name=eponine scaffold_45 . biological_region 154278 154283 0.999 - . logic_name=eponine scaffold_45 . biological_region 154352 154354 0.999 - . logic_name=eponine scaffold_45 . biological_region 154704 154706 0.999 + . logic_name=eponine scaffold_45 . biological_region 154705 154710 0.999 - . logic_name=eponine scaffold_45 . biological_region 156606 156608 0.999 - . logic_name=eponine scaffold_45 ensembl protein_coding_gene 154598 155821 . + . ID=Phyra49296;biotype=protein_coding;external_name=gwEuk.45.80.1;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 154598 155821 . + . ID=Phyra49296;Parent=Phyra49296;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 154598 155242 . + 0 ID=Phyra49296;Parent=Phyra49296;rank=1 scaffold_45 . exon 154598 155242 . + . ID=Phyra49296.1;Parent=Phyra49296;constitutive=1;rank=1 scaffold_45 . CDS 155311 155405 . + 0 ID=Phyra49296;Parent=Phyra49296;rank=2 scaffold_45 . exon 155311 155405 . + . ID=Phyra49296.2;Parent=Phyra49296;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_45 . CDS 155464 155821 . + 0 ID=Phyra49296;Parent=Phyra49296;rank=3 scaffold_45 . exon 155464 155821 . + . ID=Phyra49296.3;Parent=Phyra49296;constitutive=1;ensembl_phase=2;rank=3 scaffold_45 ensembl protein_coding_gene 149702 150828 . + . ID=Phyra80036;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000035;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 149702 150828 . + . ID=Phyra80036;Parent=Phyra80036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 149702 150222 . + 0 ID=Phyra80036;Parent=Phyra80036;rank=1 scaffold_45 . exon 149702 150222 . + . ID=Phyra80036.1;Parent=Phyra80036;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 150285 150828 . + 0 ID=Phyra80036;Parent=Phyra80036;rank=2 scaffold_45 . exon 150285 150828 . + . ID=Phyra80036.2;Parent=Phyra80036;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 ensembl protein_coding_gene 151009 151785 . - . ID=Phyra80037;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000036;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 151009 151785 . - . ID=Phyra80037;Parent=Phyra80037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 151009 151785 . - 0 ID=Phyra80037;Parent=Phyra80037;rank=1 scaffold_45 . exon 151009 151785 . - . ID=Phyra80037.1;Parent=Phyra80037;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 152137 153111 . - . ID=Phyra80038;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000037;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 152137 153111 . - . ID=Phyra80038;Parent=Phyra80038;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 152137 153111 . - 0 ID=Phyra80038;Parent=Phyra80038;rank=1 scaffold_45 . exon 152137 153111 . - . ID=Phyra80038.1;Parent=Phyra80038;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 153688 154377 . - . ID=Phyra80039;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000038;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 153688 154377 . - . ID=Phyra80039;Parent=Phyra80039;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 153688 154377 . - 0 ID=Phyra80039;Parent=Phyra80039;rank=1 scaffold_45 . exon 153688 154377 . - . ID=Phyra80039.1;Parent=Phyra80039;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 156354 157783 . - . ID=Phyra80041;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000040;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 156354 157783 . - . ID=Phyra80041;Parent=Phyra80041;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 156354 156596 . - 0 ID=Phyra80041;Parent=Phyra80041;rank=3 scaffold_45 . exon 156354 156596 . - . ID=Phyra80041.3;Parent=Phyra80041;constitutive=1;rank=3 scaffold_45 . CDS 156732 157297 . - 0 ID=Phyra80041;Parent=Phyra80041;rank=2 scaffold_45 . exon 156732 157297 . - . ID=Phyra80041.2;Parent=Phyra80041;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 157363 157783 . - 0 ID=Phyra80041;Parent=Phyra80041;rank=1 scaffold_45 . repeat_region 157335 157342 . ? . description=dust scaffold_45 . repeat_region 164900 164914 . ? . description=dust scaffold_45 . repeat_region 165336 165354 . ? . description=dust scaffold_45 . repeat_region 165497 165546 . ? . description=dust scaffold_45 . repeat_region 166425 166474 . ? . description=dust scaffold_45 ensembl protein_coding_gene 160536 161693 . - . ID=Phyra49306;biotype=protein_coding;external_name=gwEuk.45.90.1;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 160536 161693 . - . ID=Phyra49306;Parent=Phyra49306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 160536 161082 . - 0 ID=Phyra49306;Parent=Phyra49306;rank=2 scaffold_45 . exon 160536 161082 . - . ID=Phyra49306.2;Parent=Phyra49306;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 161176 161693 . - 0 ID=Phyra49306;Parent=Phyra49306;rank=1 scaffold_45 . exon 161176 161693 . - . ID=Phyra49306.1;Parent=Phyra49306;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 ensembl protein_coding_gene 162595 163230 . + . ID=Phyra71760;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_45000002;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 162595 163230 . + . ID=Phyra71760;Parent=Phyra71760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 162595 163230 . + 0 ID=Phyra71760;Parent=Phyra71760;rank=1 scaffold_45 . exon 162595 163230 . + . ID=Phyra71760.1;Parent=Phyra71760;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 163520 164218 . - . ID=Phyra71761;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_45000003;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 163520 164218 . - . ID=Phyra71761;Parent=Phyra71761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 163520 164218 . - 0 ID=Phyra71761;Parent=Phyra71761;rank=1 scaffold_45 . exon 163520 164218 . - . ID=Phyra71761.1;Parent=Phyra71761;constitutive=1;rank=1 scaffold_45 . exon 157363 157783 . - . ID=Phyra80041.1;Parent=Phyra80041;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 ensembl protein_coding_gene 159099 160170 . + . ID=Phyra80042;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000041;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 159099 160170 . + . ID=Phyra80042;Parent=Phyra80042;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 159099 159156 . + 0 ID=Phyra80042;Parent=Phyra80042;rank=1 scaffold_45 . exon 159099 159156 . + . ID=Phyra80042.1;Parent=Phyra80042;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . CDS 159224 160170 . + 0 ID=Phyra80042;Parent=Phyra80042;rank=2 scaffold_45 . exon 159224 160170 . + . ID=Phyra80042.2;Parent=Phyra80042;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . biological_region 172868 172875 0.999 + . logic_name=eponine scaffold_45 . repeat_region 176912 176937 . ? . description=trf scaffold_45 . repeat_region 179248 179360 . + . description=(TGAG)n scaffold_45 . repeat_region 179257 179360 . ? . description=dust scaffold_45 . repeat_region 179261 179360 . ? . description=trf scaffold_45 . repeat_region 179268 179360 . ? . description=trf scaffold_45 . repeat_region 179836 179847 . ? . description=dust scaffold_45 . repeat_region 182417 182466 . ? . description=dust scaffold_45 . repeat_region 182510 182523 . ? . description=dust scaffold_45 . repeat_region 183197 183225 . ? . description=trf scaffold_45 . repeat_region 183893 184523 . ? . description=dust scaffold_45 . repeat_region 185203 185213 . ? . description=dust scaffold_45 . repeat_region 185693 185702 . ? . description=dust scaffold_45 ensembl tRNA_gene 179697 179769 . - . ID=EPrPRAG00000000095;biotype=tRNA;description=tRNA-Arg for anticodon CCU [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_45 ensembl transcript 179697 179769 . - . ID=EPrPRAT00000000095;Parent=EPrPRAG00000000095;biotype=tRNA;logic_name=ncrna_eg scaffold_45 . exon 179697 179769 . - . ID=EPrPRAE00000000095;Parent=EPrPRAT00000000095;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 ensembl protein_coding_gene 180179 181187 . + . ID=Phyra80046;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000045;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 180179 181187 . + . ID=Phyra80046;Parent=Phyra80046;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 180179 180284 . + 0 ID=Phyra80046;Parent=Phyra80046;rank=1 scaffold_45 . exon 180179 180284 . + . ID=Phyra80046.1;Parent=Phyra80046;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . CDS 180463 180588 . + 0 ID=Phyra80046;Parent=Phyra80046;rank=2 scaffold_45 . exon 180463 180588 . + . ID=Phyra80046.2;Parent=Phyra80046;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 180877 181187 . + 0 ID=Phyra80046;Parent=Phyra80046;rank=3 scaffold_45 . exon 180877 181187 . + . ID=Phyra80046.3;Parent=Phyra80046;constitutive=1;ensembl_phase=1;rank=3 scaffold_45 . biological_region 192666 192669 0.999 + . logic_name=eponine scaffold_45 ensembl protein_coding_gene 187074 187409 . - . ID=Phyra49317;biotype=protein_coding;external_name=gwEuk.45.101.1;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 187074 187409 . - . ID=Phyra49317;Parent=Phyra49317;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 187074 187409 . - 0 ID=Phyra49317;Parent=Phyra49317;rank=1 scaffold_45 . exon 187074 187409 . - . ID=Phyra49317.1;Parent=Phyra49317;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 190697 191411 . + . ID=Phyra80047;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000046;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 190697 191411 . + . ID=Phyra80047;Parent=Phyra80047;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 190697 190699 . + 0 ID=Phyra80047;Parent=Phyra80047;rank=1 scaffold_45 . exon 190697 190699 . + . ID=Phyra80047.1;Parent=Phyra80047;constitutive=1;rank=1 scaffold_45 . CDS 190930 191105 . + 0 ID=Phyra80047;Parent=Phyra80047;rank=2 scaffold_45 . exon 190930 191105 . + . ID=Phyra80047.2;Parent=Phyra80047;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_45 . CDS 191186 191411 . + 0 ID=Phyra80047;Parent=Phyra80047;rank=3 scaffold_45 . exon 191186 191411 . + . ID=Phyra80047.3;Parent=Phyra80047;constitutive=1;ensembl_phase=2;rank=3 scaffold_45 ensembl protein_coding_gene 195887 197747 . + . ID=Phyra80048;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000047;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 195887 197747 . + . ID=Phyra80048;Parent=Phyra80048;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 195887 195952 . + 0 ID=Phyra80048;Parent=Phyra80048;rank=1 scaffold_45 . exon 195887 195952 . + . ID=Phyra80048.1;Parent=Phyra80048;constitutive=1;rank=1 scaffold_45 . CDS 196017 196244 . + 0 ID=Phyra80048;Parent=Phyra80048;rank=2 scaffold_45 . exon 196017 196244 . + . ID=Phyra80048.2;Parent=Phyra80048;constitutive=1;rank=2 scaffold_45 . CDS 196313 196394 . + 0 ID=Phyra80048;Parent=Phyra80048;rank=3 scaffold_45 . CDS 196456 196525 . + 0 ID=Phyra80048;Parent=Phyra80048;rank=4 scaffold_45 . CDS 196591 197109 . + 0 ID=Phyra80048;Parent=Phyra80048;rank=5 scaffold_45 . CDS 197204 197747 . + 0 ID=Phyra80048;Parent=Phyra80048;rank=6 scaffold_45 . repeat_region 200282 200301 . ? . description=trf scaffold_45 . repeat_region 202817 202850 . ? . description=trf scaffold_45 ensembl protein_coding_gene 203112 204368 . + . ID=Phyra71762;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_45000004;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 203112 204368 . + . ID=Phyra71762;Parent=Phyra71762;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 203112 204368 . + 0 ID=Phyra71762;Parent=Phyra71762;rank=1 scaffold_45 . exon 203112 204368 . + . ID=Phyra71762.1;Parent=Phyra71762;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 204455 205759 . - . ID=Phyra71763;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_45000005;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 204455 205759 . - . ID=Phyra71763;Parent=Phyra71763;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 204455 204539 . - 0 ID=Phyra71763;Parent=Phyra71763;rank=4 scaffold_45 . exon 204455 204539 . - . ID=Phyra71763.4;Parent=Phyra71763;constitutive=1;ensembl_phase=2;rank=4 scaffold_45 . CDS 204614 204736 . - 0 ID=Phyra71763;Parent=Phyra71763;rank=3 scaffold_45 . exon 204614 204736 . - . ID=Phyra71763.3;Parent=Phyra71763;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_45 . CDS 204805 205383 . - 0 ID=Phyra71763;Parent=Phyra71763;rank=2 scaffold_45 . exon 204805 205383 . - . ID=Phyra71763.2;Parent=Phyra71763;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_45 . CDS 205476 205759 . - 0 ID=Phyra71763;Parent=Phyra71763;rank=1 scaffold_45 . exon 205476 205759 . - . ID=Phyra71763.1;Parent=Phyra71763;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . exon 196313 196394 . + . ID=Phyra80048.3;Parent=Phyra80048;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_45 . exon 196456 196525 . + . ID=Phyra80048.4;Parent=Phyra80048;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_45 . exon 196591 197109 . + . ID=Phyra80048.5;Parent=Phyra80048;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_45 . exon 197204 197747 . + . ID=Phyra80048.6;Parent=Phyra80048;constitutive=1;ensembl_phase=2;rank=6 scaffold_45 ensembl protein_coding_gene 198240 199181 . - . ID=Phyra80049;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000048;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 198240 199181 . - . ID=Phyra80049;Parent=Phyra80049;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 198240 198516 . - 0 ID=Phyra80049;Parent=Phyra80049;rank=3 scaffold_45 . exon 198240 198516 . - . ID=Phyra80049.3;Parent=Phyra80049;constitutive=1;ensembl_phase=2;rank=3 scaffold_45 . CDS 198588 198880 . - 0 ID=Phyra80049;Parent=Phyra80049;rank=2 scaffold_45 . exon 198588 198880 . - . ID=Phyra80049.2;Parent=Phyra80049;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_45 . CDS 198951 199181 . - 0 ID=Phyra80049;Parent=Phyra80049;rank=1 scaffold_45 . exon 198951 199181 . - . ID=Phyra80049.1;Parent=Phyra80049;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 200823 202524 . - . ID=Phyra80050;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000049;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 200823 202524 . - . ID=Phyra80050;Parent=Phyra80050;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 200823 200978 . - 0 ID=Phyra80050;Parent=Phyra80050;rank=5 scaffold_45 . exon 200823 200978 . - . ID=Phyra80050.5;Parent=Phyra80050;constitutive=1;rank=5 scaffold_45 . CDS 201036 201707 . - 0 ID=Phyra80050;Parent=Phyra80050;rank=4 scaffold_45 . exon 201036 201707 . - . ID=Phyra80050.4;Parent=Phyra80050;constitutive=1;rank=4 scaffold_45 . CDS 201772 202177 . - 0 ID=Phyra80050;Parent=Phyra80050;rank=3 scaffold_45 . exon 201772 202177 . - . ID=Phyra80050.3;Parent=Phyra80050;constitutive=1;ensembl_phase=2;rank=3 scaffold_45 . CDS 202237 202284 . - 0 ID=Phyra80050;Parent=Phyra80050;rank=2 scaffold_45 . exon 202237 202284 . - . ID=Phyra80050.2;Parent=Phyra80050;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_45 . CDS 202355 202524 . - 0 ID=Phyra80050;Parent=Phyra80050;rank=1 scaffold_45 . exon 202355 202524 . - . ID=Phyra80050.1;Parent=Phyra80050;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . biological_region 206554 206554 0.999 - . logic_name=eponine scaffold_45 . biological_region 214063 214069 0.999 + . logic_name=eponine scaffold_45 . biological_region 214184 214189 0.999 + . logic_name=eponine scaffold_45 . biological_region 214226 214232 0.999 - . logic_name=eponine scaffold_45 . biological_region 215092 215095 0.999 - . logic_name=eponine scaffold_45 . biological_region 215345 215349 0.999 + . logic_name=eponine scaffold_45 . biological_region 215470 215478 0.999 - . logic_name=eponine scaffold_45 . biological_region 215477 215479 0.999 + . logic_name=eponine scaffold_45 . biological_region 215498 215502 0.999 + . logic_name=eponine scaffold_45 ensembl protein_coding_gene 206468 210203 . + . ID=Phyra80053;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000052;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 206468 210203 . + . ID=Phyra80053;Parent=Phyra80053;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 206468 206683 . + 0 ID=Phyra80053;Parent=Phyra80053;rank=1 scaffold_45 . exon 206468 206683 . + . ID=Phyra80053.1;Parent=Phyra80053;constitutive=1;rank=1 scaffold_45 . CDS 206747 206852 . + 0 ID=Phyra80053;Parent=Phyra80053;rank=2 scaffold_45 . exon 206747 206852 . + . ID=Phyra80053.2;Parent=Phyra80053;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_45 . CDS 206922 207844 . + 0 ID=Phyra80053;Parent=Phyra80053;rank=3 scaffold_45 . exon 206922 207844 . + . ID=Phyra80053.3;Parent=Phyra80053;constitutive=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 207924 210203 . + 0 ID=Phyra80053;Parent=Phyra80053;rank=4 scaffold_45 . exon 207924 210203 . + . ID=Phyra80053.4;Parent=Phyra80053;constitutive=1;rank=4 scaffold_45 ensembl protein_coding_gene 210294 214767 . - . ID=Phyra80054;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000053;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 210294 214767 . - . ID=Phyra80054;Parent=Phyra80054;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 210294 212024 . - 0 ID=Phyra80054;Parent=Phyra80054;rank=11 scaffold_45 . exon 210294 212024 . - . ID=Phyra80054.11;Parent=Phyra80054;constitutive=1;rank=11 scaffold_45 . CDS 212098 212181 . - 0 ID=Phyra80054;Parent=Phyra80054;rank=10 scaffold_45 . exon 212098 212181 . - . ID=Phyra80054.10;Parent=Phyra80054;constitutive=1;rank=10 scaffold_45 . CDS 212246 212659 . - 0 ID=Phyra80054;Parent=Phyra80054;rank=9 scaffold_45 . exon 212246 212659 . - . ID=Phyra80054.9;Parent=Phyra80054;constitutive=1;rank=9 scaffold_45 . CDS 212941 213220 . - 0 ID=Phyra80054;Parent=Phyra80054;rank=8 scaffold_45 . exon 212941 213220 . - . ID=Phyra80054.8;Parent=Phyra80054;constitutive=1;ensembl_phase=2;rank=8 scaffold_45 . CDS 213281 213423 . - 0 ID=Phyra80054;Parent=Phyra80054;rank=7 scaffold_45 . exon 213281 213423 . - . ID=Phyra80054.7;Parent=Phyra80054;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_45 . CDS 213497 213567 . - 0 ID=Phyra80054;Parent=Phyra80054;rank=6 scaffold_45 . exon 213497 213567 . - . ID=Phyra80054.6;Parent=Phyra80054;constitutive=1;ensembl_phase=1;rank=6 scaffold_45 . CDS 213635 213728 . - 0 ID=Phyra80054;Parent=Phyra80054;rank=5 scaffold_45 . exon 213635 213728 . - . ID=Phyra80054.5;Parent=Phyra80054;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_45 . CDS 213794 214340 . - 0 ID=Phyra80054;Parent=Phyra80054;rank=4 scaffold_45 . exon 213794 214340 . - . ID=Phyra80054.4;Parent=Phyra80054;constitutive=1;ensembl_phase=2;rank=4 scaffold_45 . CDS 214424 214454 . - 0 ID=Phyra80054;Parent=Phyra80054;rank=3 scaffold_45 . exon 214424 214454 . - . ID=Phyra80054.3;Parent=Phyra80054;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_45 . CDS 214561 214644 . - 0 ID=Phyra80054;Parent=Phyra80054;rank=2 scaffold_45 . exon 214561 214644 . - . ID=Phyra80054.2;Parent=Phyra80054;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 214752 214767 . - 0 ID=Phyra80054;Parent=Phyra80054;rank=1 scaffold_45 . exon 214752 214767 . - . ID=Phyra80054.1;Parent=Phyra80054;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . repeat_region 225061 225070 . ? . description=dust scaffold_45 ensembl protein_coding_gene 217876 219523 . + . ID=Phyra80056;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000055;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 217876 219523 . + . ID=Phyra80056;Parent=Phyra80056;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 217876 218052 . + 0 ID=Phyra80056;Parent=Phyra80056;rank=1 scaffold_45 . exon 217876 218052 . + . ID=Phyra80056.1;Parent=Phyra80056;constitutive=1;rank=1 scaffold_45 . CDS 218120 218272 . + 0 ID=Phyra80056;Parent=Phyra80056;rank=2 scaffold_45 . exon 218120 218272 . + . ID=Phyra80056.2;Parent=Phyra80056;constitutive=1;rank=2 scaffold_45 . CDS 218339 218759 . + 0 ID=Phyra80056;Parent=Phyra80056;rank=3 scaffold_45 . exon 218339 218759 . + . ID=Phyra80056.3;Parent=Phyra80056;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_45 . CDS 218877 219111 . + 0 ID=Phyra80056;Parent=Phyra80056;rank=4 scaffold_45 . exon 218877 219111 . + . ID=Phyra80056.4;Parent=Phyra80056;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_45 . CDS 219199 219523 . + 0 ID=Phyra80056;Parent=Phyra80056;rank=5 scaffold_45 . exon 219199 219523 . + . ID=Phyra80056.5;Parent=Phyra80056;constitutive=1;ensembl_phase=2;rank=5 scaffold_45 ensembl protein_coding_gene 220658 224908 . + . ID=Phyra80057;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000056;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 220658 224908 . + . ID=Phyra80057;Parent=Phyra80057;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 220658 224908 . + 0 ID=Phyra80057;Parent=Phyra80057;rank=1 scaffold_45 . exon 220658 224908 . + . ID=Phyra80057.1;Parent=Phyra80057;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 216347 217675 . - . ID=Phyra95586;biotype=protein_coding;external_name=C_scaffold_45000007;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 216347 217675 . - . ID=Phyra95586;Parent=Phyra95586;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 216347 216539 . - 0 ID=Phyra95586;Parent=Phyra95586;rank=5 scaffold_45 . exon 216347 216539 . - . ID=Phyra95586.5;Parent=Phyra95586;constitutive=1;ensembl_phase=2;rank=5 scaffold_45 . CDS 216612 217003 . - 0 ID=Phyra95586;Parent=Phyra95586;rank=4 scaffold_45 . exon 216612 217003 . - . ID=Phyra95586.4;Parent=Phyra95586;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_45 . CDS 217067 217197 . - 0 ID=Phyra95586;Parent=Phyra95586;rank=3 scaffold_45 . exon 217067 217197 . - . ID=Phyra95586.3;Parent=Phyra95586;constitutive=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 217253 217479 . - 0 ID=Phyra95586;Parent=Phyra95586;rank=2 scaffold_45 . exon 217253 217479 . - . ID=Phyra95586.2;Parent=Phyra95586;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 217536 217675 . - 0 ID=Phyra95586;Parent=Phyra95586;rank=1 scaffold_45 . exon 217536 217675 . - . ID=Phyra95586.1;Parent=Phyra95586;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . repeat_region 226430 226469 . ? . description=trf scaffold_45 . repeat_region 226430 226476 . ? . description=trf scaffold_45 . repeat_region 230631 230671 . ? . description=trf scaffold_45 . repeat_region 230631 230675 . ? . description=trf scaffold_45 . repeat_region 233994 234029 . ? . description=trf scaffold_45 ensembl protein_coding_gene 227358 227747 . + . ID=Phyra80058;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000057;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 227358 227747 . + . ID=Phyra80058;Parent=Phyra80058;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 227358 227747 . + 0 ID=Phyra80058;Parent=Phyra80058;rank=1 scaffold_45 . exon 227358 227747 . + . ID=Phyra80058.1;Parent=Phyra80058;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 231438 231951 . + . ID=Phyra80059;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000058;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 231438 231951 . + . ID=Phyra80059;Parent=Phyra80059;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 231438 231475 . + 0 ID=Phyra80059;Parent=Phyra80059;rank=1 scaffold_45 . exon 231438 231475 . + . ID=Phyra80059.1;Parent=Phyra80059;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 231495 231951 . + 0 ID=Phyra80059;Parent=Phyra80059;rank=2 scaffold_45 . exon 231495 231951 . + . ID=Phyra80059.2;Parent=Phyra80059;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 . repeat_region 236582 236871 . ? . description=dust scaffold_45 . repeat_region 237251 237294 . ? . description=dust scaffold_45 . biological_region 237318 237321 0.999 - . logic_name=eponine scaffold_45 . repeat_region 238736 238758 . ? . description=dust scaffold_45 . repeat_region 239421 239431 . ? . description=dust scaffold_45 . biological_region 239623 239627 0.999 + . logic_name=eponine scaffold_45 . repeat_region 241272 241321 . ? . description=dust scaffold_45 . repeat_region 244986 245035 . ? . description=dust scaffold_45 ensembl pseudogene 241320 256030 . + . ID=Phyra49228;biotype=pseudogene;external_name=gwEuk.45.12.1;logic_name=jgi_phyra1 scaffold_45 ensembl pseudogene 241320 256030 . + . ID=Phyra49228;Parent=Phyra49228;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_45 . exon 241320 241643 . + . ID=Phyra49228.1;Parent=Phyra49228;constitutive=1;rank=1 scaffold_45 . exon 241746 242177 . + . ID=Phyra49228.2;Parent=Phyra49228;constitutive=1;rank=2 scaffold_45 . exon 242244 242545 . + . ID=Phyra49228.3;Parent=Phyra49228;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_45 . exon 242715 243357 . + . ID=Phyra49228.4;Parent=Phyra49228;constitutive=1;ensembl_phase=2;rank=4 scaffold_45 . repeat_region 248755 248798 . ? . description=trf scaffold_45 . repeat_region 254335 254355 . ? . description=trf scaffold_45 . repeat_region 255108 255158 . ? . description=dust scaffold_45 . biological_region 255181 255186 0.999 - . logic_name=eponine scaffold_45 . biological_region 255230 255231 0.999 - . logic_name=eponine scaffold_45 . repeat_region 256033 256211 . ? . description=dust scaffold_45 . biological_region 260123 260125 0.999 - . logic_name=eponine scaffold_45 . biological_region 260762 260763 0.999 + . logic_name=eponine scaffold_45 . biological_region 260791 260794 0.999 - . logic_name=eponine scaffold_45 . biological_region 260818 260820 0.999 + . logic_name=eponine scaffold_45 . repeat_region 263380 263388 . ? . description=dust scaffold_45 . biological_region 264523 264523 0.999 + . logic_name=eponine scaffold_45 ensembl pseudogene 241320 256030 . + . ID=Phyra49228;biotype=pseudogene;external_name=gwEuk.45.12.1;logic_name=jgi_phyra1 scaffold_45 ensembl pseudogene 241320 256030 . + . ID=Phyra49228;Parent=Phyra49228;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_45 . exon 255597 256030 . + . ID=Phyra49228.5;Parent=Phyra49228;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_45 ensembl protein_coding_gene 257459 258028 . + . ID=Phyra49229;biotype=protein_coding;external_name=gwEuk.45.13.1;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 257459 258028 . + . ID=Phyra49229;Parent=Phyra49229;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 257459 258028 . + 0 ID=Phyra49229;Parent=Phyra49229;rank=1 scaffold_45 . exon 257459 258028 . + . ID=Phyra49229.1;Parent=Phyra49229;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 259505 260987 . + . ID=Phyra80062;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000061;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 259505 260987 . + . ID=Phyra80062;Parent=Phyra80062;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 259505 259771 . + 0 ID=Phyra80062;Parent=Phyra80062;rank=1 scaffold_45 . exon 259505 259771 . + . ID=Phyra80062.1;Parent=Phyra80062;constitutive=1;rank=1 scaffold_45 . CDS 259830 260987 . + 0 ID=Phyra80062;Parent=Phyra80062;rank=2 scaffold_45 . exon 259830 260987 . + . ID=Phyra80062.2;Parent=Phyra80062;constitutive=1;rank=2 scaffold_45 ensembl protein_coding_gene 262184 263183 . + . ID=Phyra80063;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000062;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 262184 263183 . + . ID=Phyra80063;Parent=Phyra80063;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 262184 262450 . + 0 ID=Phyra80063;Parent=Phyra80063;rank=1 scaffold_45 . exon 262184 262450 . + . ID=Phyra80063.1;Parent=Phyra80063;constitutive=1;rank=1 scaffold_45 . CDS 262509 263183 . + 0 ID=Phyra80063;Parent=Phyra80063;rank=2 scaffold_45 . exon 262509 263183 . + . ID=Phyra80063.2;Parent=Phyra80063;constitutive=1;rank=2 scaffold_45 ensembl protein_coding_gene 263464 269411 . - . ID=Phyra95588;biotype=protein_coding;external_name=C_scaffold_45000009;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 263464 269411 . - . ID=Phyra95588;Parent=Phyra95588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 263464 263708 . - 0 ID=Phyra95588;Parent=Phyra95588;rank=8 scaffold_45 . exon 263464 263708 . - . ID=Phyra95588.8;Parent=Phyra95588;constitutive=1;ensembl_phase=1;rank=8 scaffold_45 . CDS 263799 264222 . - 0 ID=Phyra95588;Parent=Phyra95588;rank=7 scaffold_45 . exon 263799 264222 . - . ID=Phyra95588.7;Parent=Phyra95588;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_45 . CDS 264250 265174 . - 0 ID=Phyra95588;Parent=Phyra95588;rank=6 scaffold_45 . exon 264250 265174 . - . ID=Phyra95588.6;Parent=Phyra95588;constitutive=1;ensembl_phase=2;rank=6 scaffold_45 . CDS 265750 265943 . - 0 ID=Phyra95588;Parent=Phyra95588;rank=5 scaffold_45 . CDS 265968 266683 . - 0 ID=Phyra95588;Parent=Phyra95588;rank=4 scaffold_45 . CDS 266909 267477 . - 0 ID=Phyra95588;Parent=Phyra95588;rank=3 scaffold_45 . CDS 267709 268003 . - 0 ID=Phyra95588;Parent=Phyra95588;rank=2 scaffold_45 . CDS 268046 269411 . - 0 ID=Phyra95588;Parent=Phyra95588;rank=1 scaffold_45 . repeat_region 274349 274425 . ? . description=trf scaffold_45 . repeat_region 274349 274425 . ? . description=trf scaffold_45 . repeat_region 274438 274487 . ? . description=trf scaffold_45 ensembl protein_coding_gene 271292 272371 . + . ID=Phyra80067;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000066;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 271292 272371 . + . ID=Phyra80067;Parent=Phyra80067;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 271292 272371 . + 0 ID=Phyra80067;Parent=Phyra80067;rank=1 scaffold_45 . exon 271292 272371 . + . ID=Phyra80067.1;Parent=Phyra80067;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 272596 278139 . - . ID=Phyra80068;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000067;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 272596 278139 . - . ID=Phyra80068;Parent=Phyra80068;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 272596 278139 . - 0 ID=Phyra80068;Parent=Phyra80068;rank=1 scaffold_45 . exon 272596 278139 . - . ID=Phyra80068.1;Parent=Phyra80068;constitutive=1;rank=1 scaffold_45 . exon 265750 265943 . - . ID=Phyra95588.5;Parent=Phyra95588;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_45 . exon 265968 266683 . - . ID=Phyra95588.4;Parent=Phyra95588;constitutive=1;ensembl_phase=1;rank=4 scaffold_45 . exon 266909 267477 . - . ID=Phyra95588.3;Parent=Phyra95588;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_45 . exon 267709 268003 . - . ID=Phyra95588.2;Parent=Phyra95588;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_45 . exon 268046 269411 . - . ID=Phyra95588.1;Parent=Phyra95588;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . biological_region 276832 276834 0.999 - . logic_name=eponine scaffold_45 . biological_region 278604 278606 0.999 - . logic_name=eponine scaffold_45 . biological_region 278656 278661 0.999 - . logic_name=eponine scaffold_45 . biological_region 278661 278665 0.999 + . logic_name=eponine scaffold_45 . biological_region 278690 278692 0.999 + . logic_name=eponine scaffold_45 . biological_region 278697 278700 0.999 - . logic_name=eponine scaffold_45 . biological_region 279379 279382 0.999 + . logic_name=eponine scaffold_45 . biological_region 279388 279388 0.999 - . logic_name=eponine scaffold_45 . biological_region 279529 279529 0.999 - . logic_name=eponine scaffold_45 . biological_region 279930 279931 0.999 - . logic_name=eponine scaffold_45 . biological_region 282822 282822 0.999 + . logic_name=eponine scaffold_45 ensembl protein_coding_gene 281281 282375 . + . ID=Phyra49243;biotype=protein_coding;external_name=gwEuk.45.27.1;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 281281 282375 . + . ID=Phyra49243;Parent=Phyra49243;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 281281 282375 . + 0 ID=Phyra49243;Parent=Phyra49243;rank=1 scaffold_45 . exon 281281 282375 . + . ID=Phyra49243.1;Parent=Phyra49243;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 278489 279607 . + . ID=Phyra71764;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_45000006;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 278489 279607 . + . ID=Phyra71764;Parent=Phyra71764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 278489 279607 . + 0 ID=Phyra71764;Parent=Phyra71764;rank=1 scaffold_45 . exon 278489 279607 . + . ID=Phyra71764.1;Parent=Phyra71764;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 279805 280483 . + . ID=Phyra80070;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000069;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 279805 280483 . + . ID=Phyra80070;Parent=Phyra80070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 279805 280377 . + 0 ID=Phyra80070;Parent=Phyra80070;rank=1 scaffold_45 . exon 279805 280377 . + . ID=Phyra80070.1;Parent=Phyra80070;constitutive=1;rank=1 scaffold_45 . CDS 280427 280483 . + 0 ID=Phyra80070;Parent=Phyra80070;rank=2 scaffold_45 . exon 280427 280483 . + . ID=Phyra80070.2;Parent=Phyra80070;constitutive=1;rank=2 scaffold_45 ensembl protein_coding_gene 282992 283873 . + . ID=Phyra80072;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000071;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 282992 283873 . + . ID=Phyra80072;Parent=Phyra80072;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 282992 283873 . + 0 ID=Phyra80072;Parent=Phyra80072;rank=1 scaffold_45 . exon 282992 283873 . + . ID=Phyra80072.1;Parent=Phyra80072;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 284030 285416 . - . ID=Phyra80073;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000072;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 284030 285416 . - . ID=Phyra80073;Parent=Phyra80073;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 284030 284875 . - 0 ID=Phyra80073;Parent=Phyra80073;rank=2 scaffold_45 . exon 284030 284875 . - . ID=Phyra80073.2;Parent=Phyra80073;constitutive=1;rank=2 scaffold_45 . CDS 284937 285416 . - 0 ID=Phyra80073;Parent=Phyra80073;rank=1 scaffold_45 . repeat_region 287335 287348 . ? . description=dust scaffold_45 ensembl protein_coding_gene 292182 292934 . + . ID=Phyra71766;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_45000008;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 292182 292934 . + . ID=Phyra71766;Parent=Phyra71766;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 292182 292934 . + 0 ID=Phyra71766;Parent=Phyra71766;rank=1 scaffold_45 . exon 292182 292934 . + . ID=Phyra71766.1;Parent=Phyra71766;constitutive=1;rank=1 scaffold_45 . exon 284937 285416 . - . ID=Phyra80073.1;Parent=Phyra80073;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 287881 292035 . + . ID=Phyra80074;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000073;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 287881 292035 . + . ID=Phyra80074;Parent=Phyra80074;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 287881 292035 . + 0 ID=Phyra80074;Parent=Phyra80074;rank=1 scaffold_45 . exon 287881 292035 . + . ID=Phyra80074.1;Parent=Phyra80074;constitutive=1;rank=1 scaffold_45 . biological_region 298048 298048 0.999 + . logic_name=eponine scaffold_45 . biological_region 299455 299455 0.999 + . logic_name=eponine scaffold_45 . biological_region 300256 300259 0.999 - . logic_name=eponine scaffold_45 . biological_region 300310 300316 0.999 + . logic_name=eponine scaffold_45 . biological_region 300388 300388 0.999 - . logic_name=eponine scaffold_45 . biological_region 300773 300781 0.999 - . logic_name=eponine scaffold_45 . biological_region 302112 302114 0.999 - . logic_name=eponine scaffold_45 . biological_region 302179 302180 0.999 - . logic_name=eponine scaffold_45 . biological_region 303927 303931 0.999 + . logic_name=eponine scaffold_45 . biological_region 303973 303978 0.999 - . logic_name=eponine scaffold_45 ensembl protein_coding_gene 297753 299390 . + . ID=Phyra80076;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000075;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 297753 299390 . + . ID=Phyra80076;Parent=Phyra80076;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 297753 299390 . + 0 ID=Phyra80076;Parent=Phyra80076;rank=1 scaffold_45 . exon 297753 299390 . + . ID=Phyra80076.1;Parent=Phyra80076;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 300323 302452 . + . ID=Phyra80077;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000076;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 300323 302452 . + . ID=Phyra80077;Parent=Phyra80077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 300323 300384 . + 0 ID=Phyra80077;Parent=Phyra80077;rank=1 scaffold_45 . exon 300323 300384 . + . ID=Phyra80077.1;Parent=Phyra80077;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 300514 302452 . + 0 ID=Phyra80077;Parent=Phyra80077;rank=2 scaffold_45 . exon 300514 302452 . + . ID=Phyra80077.2;Parent=Phyra80077;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 ensembl protein_coding_gene 303119 304588 . + . ID=Phyra80078;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000077;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 303119 304588 . + . ID=Phyra80078;Parent=Phyra80078;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 303119 304588 . + 0 ID=Phyra80078;Parent=Phyra80078;rank=1 scaffold_45 . exon 303119 304588 . + . ID=Phyra80078.1;Parent=Phyra80078;constitutive=1;rank=1 scaffold_45 . repeat_region 308053 308097 . ? . description=trf scaffold_45 . repeat_region 308677 308684 . ? . description=dust scaffold_45 . repeat_region 312238 312245 . ? . description=dust scaffold_45 ensembl protein_coding_gene 305188 307008 . - . ID=Phyra80079;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000078;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 305188 307008 . - . ID=Phyra80079;Parent=Phyra80079;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 305188 307008 . - 0 ID=Phyra80079;Parent=Phyra80079;rank=1 scaffold_45 . exon 305188 307008 . - . ID=Phyra80079.1;Parent=Phyra80079;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 309111 311154 . + . ID=Phyra80080;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000079;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 309111 311154 . + . ID=Phyra80080;Parent=Phyra80080;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 309111 309145 . + 0 ID=Phyra80080;Parent=Phyra80080;rank=1 scaffold_45 . exon 309111 309145 . + . ID=Phyra80080.1;Parent=Phyra80080;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 309249 311154 . + 0 ID=Phyra80080;Parent=Phyra80080;rank=2 scaffold_45 . exon 309249 311154 . + . ID=Phyra80080.2;Parent=Phyra80080;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 ensembl protein_coding_gene 312875 315298 . + . ID=Phyra80081;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000080;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 312875 315298 . + . ID=Phyra80081;Parent=Phyra80081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 312875 315298 . + 0 ID=Phyra80081;Parent=Phyra80081;rank=1 scaffold_45 . exon 312875 315298 . + . ID=Phyra80081.1;Parent=Phyra80081;constitutive=1;rank=1 scaffold_45 . biological_region 313828 313831 0.999 + . logic_name=eponine scaffold_45 . biological_region 313863 313869 0.999 - . logic_name=eponine scaffold_45 . biological_region 315448 315454 0.999 + . logic_name=eponine scaffold_45 . biological_region 315476 315481 0.999 + . logic_name=eponine scaffold_45 ensembl protein_coding_gene 315491 317133 . + . ID=Phyra80082;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000081;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 315491 317133 . + . ID=Phyra80082;Parent=Phyra80082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 315491 316838 . + 0 ID=Phyra80082;Parent=Phyra80082;rank=1 scaffold_45 . exon 315491 316838 . + . ID=Phyra80082.1;Parent=Phyra80082;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . CDS 317078 317133 . + 0 ID=Phyra80082;Parent=Phyra80082;rank=2 scaffold_45 . exon 317078 317133 . + . ID=Phyra80082.2;Parent=Phyra80082;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . repeat_region 326806 326837 . ? . description=trf scaffold_45 . repeat_region 329693 329724 . ? . description=trf scaffold_45 . repeat_region 333287 347558 . ? . description=dust scaffold_45 ensembl protein_coding_gene 325446 326741 . - . ID=Phyra80083;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000082;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 325446 326741 . - . ID=Phyra80083;Parent=Phyra80083;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 325446 326741 . - 0 ID=Phyra80083;Parent=Phyra80083;rank=1 scaffold_45 . exon 325446 326741 . - . ID=Phyra80083.1;Parent=Phyra80083;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 327123 328703 . + . ID=Phyra80084;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000083;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 327123 328703 . + . ID=Phyra80084;Parent=Phyra80084;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 327123 328703 . + 0 ID=Phyra80084;Parent=Phyra80084;rank=1 scaffold_45 . exon 327123 328703 . + . ID=Phyra80084.1;Parent=Phyra80084;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 328827 330862 . - . ID=Phyra80085;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000084;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 328827 330862 . - . ID=Phyra80085;Parent=Phyra80085;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 328827 330319 . - 0 ID=Phyra80085;Parent=Phyra80085;rank=3 scaffold_45 . exon 328827 330319 . - . ID=Phyra80085.3;Parent=Phyra80085;constitutive=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 330715 330736 . - 0 ID=Phyra80085;Parent=Phyra80085;rank=2 scaffold_45 . exon 330715 330736 . - . ID=Phyra80085.2;Parent=Phyra80085;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_45 . CDS 330809 330862 . - 0 ID=Phyra80085;Parent=Phyra80085;rank=1 scaffold_45 . exon 330809 330862 . - . ID=Phyra80085.1;Parent=Phyra80085;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 332447 332908 . + . ID=Phyra80086;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000085;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 332447 332908 . + . ID=Phyra80086;Parent=Phyra80086;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 332447 332908 . + 0 ID=Phyra80086;Parent=Phyra80086;rank=1 scaffold_45 . exon 332447 332908 . + . ID=Phyra80086.1;Parent=Phyra80086;constitutive=1;rank=1 scaffold_45 . repeat_region 333287 347558 . ? . description=dust scaffold_45 . repeat_region 348372 348397 . ? . description=dust scaffold_45 . repeat_region 349749 351002 . ? . description=dust scaffold_45 . repeat_region 355563 355595 . ? . description=trf scaffold_45 . biological_region 362240 362242 0.999 - . logic_name=eponine scaffold_45 ensembl pseudogene 355910 356352 . + . ID=Phyra49252;biotype=pseudogene;external_name=gwEuk.45.36.1;logic_name=jgi_phyra1 scaffold_45 ensembl pseudogene 355910 356352 . + . ID=Phyra49252;Parent=Phyra49252;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_45 . exon 355910 356049 . + . ID=Phyra49252.1;Parent=Phyra49252;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . exon 356111 356352 . + . ID=Phyra49252.2;Parent=Phyra49252;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_45 ensembl protein_coding_gene 361764 362501 . + . ID=Phyra80087;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000086;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 361764 362501 . + . ID=Phyra80087;Parent=Phyra80087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 361764 362501 . + 0 ID=Phyra80087;Parent=Phyra80087;rank=1 scaffold_45 . exon 361764 362501 . + . ID=Phyra80087.1;Parent=Phyra80087;constitutive=1;rank=1 scaffold_45 . repeat_region 362916 362965 . ? . description=dust scaffold_45 . repeat_region 364379 364428 . ? . description=dust scaffold_45 . repeat_region 365503 365552 . ? . description=dust scaffold_45 . repeat_region 366122 366129 . ? . description=dust scaffold_45 ensembl protein_coding_gene 367476 367914 . - . ID=Phyra80088;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000087;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 367476 367914 . - . ID=Phyra80088;Parent=Phyra80088;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 367476 367505 . - 0 ID=Phyra80088;Parent=Phyra80088;rank=2 scaffold_45 . exon 367476 367505 . - . ID=Phyra80088.2;Parent=Phyra80088;constitutive=1;rank=2 scaffold_45 . CDS 367531 367914 . - 0 ID=Phyra80088;Parent=Phyra80088;rank=1 scaffold_45 . exon 367531 367914 . - . ID=Phyra80088.1;Parent=Phyra80088;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 371139 372574 . + . ID=Phyra80089;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_45000088;logic_name=jgi_phyra1 scaffold_45 ensembl transcript 371139 372574 . + . ID=Phyra80089;Parent=Phyra80089;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_45 . CDS 371139 371222 . + 0 ID=Phyra80089;Parent=Phyra80089;rank=1 scaffold_45 . exon 371139 371222 . + . ID=Phyra80089.1;Parent=Phyra80089;constitutive=1;rank=1 scaffold_45 . CDS 371316 371504 . + 0 ID=Phyra80089;Parent=Phyra80089;rank=2 scaffold_45 . exon 371316 371504 . + . ID=Phyra80089.2;Parent=Phyra80089;constitutive=1;rank=2 scaffold_45 . CDS 371580 372393 . + 0 ID=Phyra80089;Parent=Phyra80089;rank=3 scaffold_45 . exon 371580 372393 . + . ID=Phyra80089.3;Parent=Phyra80089;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_45 . CDS 372462 372574 . + 0 ID=Phyra80089;Parent=Phyra80089;rank=4 scaffold_45 . exon 372462 372574 . + . ID=Phyra80089.4;Parent=Phyra80089;constitutive=1;ensembl_phase=1;rank=4 scaffold_45 . repeat_region 374614 401192 . ? . description=dust scaffold_45 . repeat_region 401693 402062 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_44 1 415431 scaffold_44 . biological_region 7 10 0.999 + . logic_name=eponine scaffold_44 . biological_region 449 453 0.999 + . logic_name=eponine scaffold_44 . biological_region 675 682 0.999 - . logic_name=eponine scaffold_44 . biological_region 691 697 0.999 - . logic_name=eponine scaffold_44 . biological_region 732 737 0.999 + . logic_name=eponine scaffold_44 . biological_region 834 836 0.999 + . logic_name=eponine scaffold_44 . biological_region 1306 1309 0.999 - . logic_name=eponine scaffold_44 . biological_region 1545 1548 0.999 + . logic_name=eponine scaffold_44 . biological_region 1627 1629 0.999 - . logic_name=eponine scaffold_44 . biological_region 5589 5590 0.999 - . logic_name=eponine scaffold_44 . biological_region 7321 7324 0.999 - . logic_name=eponine scaffold_44 ensembl protein_coding_gene 43 524 . - . ID=Phyra79856;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000001;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 43 524 . - . ID=Phyra79856;Parent=Phyra79856;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 43 524 . - 0 ID=Phyra79856;Parent=Phyra79856;rank=1 scaffold_44 . exon 43 524 . - . ID=Phyra79856.1;Parent=Phyra79856;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 ensembl protein_coding_gene 3027 7139 . - . ID=Phyra79857;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000002;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 3027 7139 . - . ID=Phyra79857;Parent=Phyra79857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 3027 7139 . - 0 ID=Phyra79857;Parent=Phyra79857;rank=1 scaffold_44 . exon 3027 7139 . - . ID=Phyra79857.1;Parent=Phyra79857;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 7689 10516 . - . ID=Phyra79858;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000003;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 7689 10516 . - . ID=Phyra79858;Parent=Phyra79858;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 7689 8558 . - 0 ID=Phyra79858;Parent=Phyra79858;rank=3 scaffold_44 . exon 7689 8558 . - . ID=Phyra79858.3;Parent=Phyra79858;constitutive=1;rank=3 scaffold_44 . CDS 8622 9419 . - 0 ID=Phyra79858;Parent=Phyra79858;rank=2 scaffold_44 . exon 8622 9419 . - . ID=Phyra79858.2;Parent=Phyra79858;constitutive=1;rank=2 scaffold_44 . CDS 9497 10516 . - 0 ID=Phyra79858;Parent=Phyra79858;rank=1 scaffold_44 . exon 9497 10516 . - . ID=Phyra79858.1;Parent=Phyra79858;constitutive=1;rank=1 scaffold_44 . repeat_region 19073 19168 . ? . description=dust scaffold_44 . repeat_region 19074 19131 . ? . description=trf scaffold_44 . repeat_region 19201 19293 . ? . description=dust scaffold_44 ensembl protein_coding_gene 12044 16171 . + . ID=Phyra79859;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000004;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 12044 16171 . + . ID=Phyra79859;Parent=Phyra79859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 12044 16171 . + 0 ID=Phyra79859;Parent=Phyra79859;rank=1 scaffold_44 . exon 12044 16171 . + . ID=Phyra79859.1;Parent=Phyra79859;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 16535 17965 . + . ID=Phyra79860;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000005;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 16535 17965 . + . ID=Phyra79860;Parent=Phyra79860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 16535 17965 . + 0 ID=Phyra79860;Parent=Phyra79860;rank=1 scaffold_44 . exon 16535 17965 . + . ID=Phyra79860.1;Parent=Phyra79860;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 18044 19498 . - . ID=Phyra79861;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000006;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 18044 19498 . - . ID=Phyra79861;Parent=Phyra79861;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 18044 18709 . - 0 ID=Phyra79861;Parent=Phyra79861;rank=2 scaffold_44 . exon 18044 18709 . - . ID=Phyra79861.2;Parent=Phyra79861;constitutive=1;rank=2 scaffold_44 . CDS 18776 19498 . - 0 ID=Phyra79861;Parent=Phyra79861;rank=1 scaffold_44 . exon 18776 19498 . - . ID=Phyra79861.1;Parent=Phyra79861;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 19744 21343 . - . ID=Phyra79862;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000007;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 19744 21343 . - . ID=Phyra79862;Parent=Phyra79862;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 19744 19839 . - 0 ID=Phyra79862;Parent=Phyra79862;rank=8 scaffold_44 . exon 19744 19839 . - . ID=Phyra79862.8;Parent=Phyra79862;constitutive=1;rank=8 scaffold_44 . CDS 19902 20327 . - 0 ID=Phyra79862;Parent=Phyra79862;rank=7 scaffold_44 . CDS 20422 20514 . - 0 ID=Phyra79862;Parent=Phyra79862;rank=6 scaffold_44 . CDS 20580 20672 . - 0 ID=Phyra79862;Parent=Phyra79862;rank=5 scaffold_44 . CDS 20737 20811 . - 0 ID=Phyra79862;Parent=Phyra79862;rank=4 scaffold_44 . CDS 20881 20940 . - 0 ID=Phyra79862;Parent=Phyra79862;rank=3 scaffold_44 . CDS 20994 21077 . - 0 ID=Phyra79862;Parent=Phyra79862;rank=2 scaffold_44 . CDS 21143 21343 . - 0 ID=Phyra79862;Parent=Phyra79862;rank=1 scaffold_44 . biological_region 20090 20095 0.999 - . logic_name=eponine scaffold_44 . biological_region 21227 21231 0.999 + . logic_name=eponine scaffold_44 . biological_region 21338 21345 0.999 - . logic_name=eponine scaffold_44 . biological_region 22176 22180 0.999 - . logic_name=eponine scaffold_44 . biological_region 22329 22333 0.999 - . logic_name=eponine scaffold_44 . biological_region 25251 25253 0.999 + . logic_name=eponine scaffold_44 . biological_region 25329 25336 0.999 - . logic_name=eponine scaffold_44 . biological_region 25393 25397 0.999 - . logic_name=eponine scaffold_44 . biological_region 26627 26628 0.999 + . logic_name=eponine scaffold_44 . exon 19902 20327 . - . ID=Phyra79862.7;Parent=Phyra79862;constitutive=1;rank=7 scaffold_44 . exon 20422 20514 . - . ID=Phyra79862.6;Parent=Phyra79862;constitutive=1;rank=6 scaffold_44 . exon 20580 20672 . - . ID=Phyra79862.5;Parent=Phyra79862;constitutive=1;rank=5 scaffold_44 . exon 20737 20811 . - . ID=Phyra79862.4;Parent=Phyra79862;constitutive=1;rank=4 scaffold_44 . exon 20881 20940 . - . ID=Phyra79862.3;Parent=Phyra79862;constitutive=1;rank=3 scaffold_44 . exon 20994 21077 . - . ID=Phyra79862.2;Parent=Phyra79862;constitutive=1;rank=2 scaffold_44 . exon 21143 21343 . - . ID=Phyra79862.1;Parent=Phyra79862;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 22102 25404 . + . ID=Phyra79863;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000008;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 22102 25404 . + . ID=Phyra79863;Parent=Phyra79863;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 22102 25404 . + 0 ID=Phyra79863;Parent=Phyra79863;rank=1 scaffold_44 . exon 22102 25404 . + . ID=Phyra79863.1;Parent=Phyra79863;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 26324 28937 . - . ID=Phyra79864;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000009;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 26324 28937 . - . ID=Phyra79864;Parent=Phyra79864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 26324 26498 . - 0 ID=Phyra79864;Parent=Phyra79864;rank=4 scaffold_44 . exon 26324 26498 . - . ID=Phyra79864.4;Parent=Phyra79864;constitutive=1;ensembl_phase=2;rank=4 scaffold_44 . CDS 26576 27358 . - 0 ID=Phyra79864;Parent=Phyra79864;rank=3 scaffold_44 . exon 26576 27358 . - . ID=Phyra79864.3;Parent=Phyra79864;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_44 . CDS 27429 28277 . - 0 ID=Phyra79864;Parent=Phyra79864;rank=2 scaffold_44 . exon 27429 28277 . - . ID=Phyra79864.2;Parent=Phyra79864;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_44 . CDS 28345 28937 . - 0 ID=Phyra79864;Parent=Phyra79864;rank=1 scaffold_44 . exon 28345 28937 . - . ID=Phyra79864.1;Parent=Phyra79864;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 ensembl protein_coding_gene 29080 30852 . + . ID=Phyra79865;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000010;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 29080 30852 . + . ID=Phyra79865;Parent=Phyra79865;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 29080 29154 . + 0 ID=Phyra79865;Parent=Phyra79865;rank=1 scaffold_44 . exon 29080 29154 . + . ID=Phyra79865.1;Parent=Phyra79865;constitutive=1;rank=1 scaffold_44 . CDS 29233 29333 . + 0 ID=Phyra79865;Parent=Phyra79865;rank=2 scaffold_44 . exon 29233 29333 . + . ID=Phyra79865.2;Parent=Phyra79865;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_44 . CDS 29405 29469 . + 0 ID=Phyra79865;Parent=Phyra79865;rank=3 scaffold_44 . exon 29405 29469 . + . ID=Phyra79865.3;Parent=Phyra79865;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_44 . CDS 30177 30718 . + 0 ID=Phyra79865;Parent=Phyra79865;rank=4 scaffold_44 . CDS 30796 30852 . + 0 ID=Phyra79865;Parent=Phyra79865;rank=5 scaffold_44 ensembl protein_coding_gene 37675 38602 . - . ID=Phyra49146;biotype=protein_coding;external_name=gwEuk.44.125.1;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 37675 38602 . - . ID=Phyra49146;Parent=Phyra49146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 37675 38079 . - 0 ID=Phyra49146;Parent=Phyra49146;rank=3 scaffold_44 . exon 37675 38079 . - . ID=Phyra49146.3;Parent=Phyra49146;constitutive=1;rank=3 scaffold_44 . CDS 38147 38482 . - 0 ID=Phyra49146;Parent=Phyra49146;rank=2 scaffold_44 . exon 38147 38482 . - . ID=Phyra49146.2;Parent=Phyra49146;constitutive=1;rank=2 scaffold_44 . CDS 38555 38602 . - 0 ID=Phyra49146;Parent=Phyra49146;rank=1 scaffold_44 . exon 38555 38602 . - . ID=Phyra49146.1;Parent=Phyra49146;constitutive=1;rank=1 scaffold_44 . exon 30177 30718 . + . ID=Phyra79865.4;Parent=Phyra79865;constitutive=1;ensembl_phase=1;rank=4 scaffold_44 . exon 30796 30852 . + . ID=Phyra79865.5;Parent=Phyra79865;constitutive=1;rank=5 scaffold_44 ensembl protein_coding_gene 31006 34926 . - . ID=Phyra79866;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000011;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 31006 34926 . - . ID=Phyra79866;Parent=Phyra79866;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 31006 31164 . - 0 ID=Phyra79866;Parent=Phyra79866;rank=12 scaffold_44 . exon 31006 31164 . - . ID=Phyra79866.12;Parent=Phyra79866;constitutive=1;rank=12 scaffold_44 . CDS 31232 31907 . - 0 ID=Phyra79866;Parent=Phyra79866;rank=11 scaffold_44 . exon 31232 31907 . - . ID=Phyra79866.11;Parent=Phyra79866;constitutive=1;ensembl_phase=2;rank=11 scaffold_44 . CDS 31977 32203 . - 0 ID=Phyra79866;Parent=Phyra79866;rank=10 scaffold_44 . exon 31977 32203 . - . ID=Phyra79866.10;Parent=Phyra79866;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_44 . CDS 32546 32795 . - 0 ID=Phyra79866;Parent=Phyra79866;rank=9 scaffold_44 . exon 32546 32795 . - . ID=Phyra79866.9;Parent=Phyra79866;constitutive=1;ensembl_phase=2;rank=9 scaffold_44 . CDS 32871 33334 . - 0 ID=Phyra79866;Parent=Phyra79866;rank=8 scaffold_44 . exon 32871 33334 . - . ID=Phyra79866.8;Parent=Phyra79866;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_44 . CDS 33493 33541 . - 0 ID=Phyra79866;Parent=Phyra79866;rank=7 scaffold_44 . exon 33493 33541 . - . ID=Phyra79866.7;Parent=Phyra79866;constitutive=1;ensembl_phase=2;rank=7 scaffold_44 . CDS 33601 34057 . - 0 ID=Phyra79866;Parent=Phyra79866;rank=6 scaffold_44 . exon 33601 34057 . - . ID=Phyra79866.6;Parent=Phyra79866;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_44 . CDS 34122 34221 . - 0 ID=Phyra79866;Parent=Phyra79866;rank=5 scaffold_44 . exon 34122 34221 . - . ID=Phyra79866.5;Parent=Phyra79866;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_44 . CDS 34288 34417 . - 0 ID=Phyra79866;Parent=Phyra79866;rank=4 scaffold_44 . exon 34288 34417 . - . ID=Phyra79866.4;Parent=Phyra79866;constitutive=1;ensembl_phase=2;rank=4 scaffold_44 . CDS 34500 34560 . - 0 ID=Phyra79866;Parent=Phyra79866;rank=3 scaffold_44 . exon 34500 34560 . - . ID=Phyra79866.3;Parent=Phyra79866;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_44 . CDS 34622 34725 . - 0 ID=Phyra79866;Parent=Phyra79866;rank=2 scaffold_44 . exon 34622 34725 . - . ID=Phyra79866.2;Parent=Phyra79866;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 34793 34926 . - 0 ID=Phyra79866;Parent=Phyra79866;rank=1 scaffold_44 . exon 34793 34926 . - . ID=Phyra79866.1;Parent=Phyra79866;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 ensembl protein_coding_gene 35086 37059 . + . ID=Phyra79867;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000012;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 35086 37059 . + . ID=Phyra79867;Parent=Phyra79867;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 35086 36700 . + 0 ID=Phyra79867;Parent=Phyra79867;rank=1 scaffold_44 . exon 35086 36700 . + . ID=Phyra79867.1;Parent=Phyra79867;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 37001 37059 . + 0 ID=Phyra79867;Parent=Phyra79867;rank=2 scaffold_44 . exon 37001 37059 . + . ID=Phyra79867.2;Parent=Phyra79867;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . biological_region 43847 43849 0.999 - . logic_name=eponine scaffold_44 . biological_region 43859 43862 0.999 - . logic_name=eponine scaffold_44 . biological_region 43879 43881 0.999 - . logic_name=eponine scaffold_44 . biological_region 48170 48171 0.999 - . logic_name=eponine scaffold_44 . biological_region 49094 49094 0.999 + . logic_name=eponine scaffold_44 . biological_region 49196 49197 0.999 + . logic_name=eponine scaffold_44 . biological_region 49405 49412 0.999 - . logic_name=eponine scaffold_44 ensembl protein_coding_gene 48411 49598 . - . ID=Phyra79871;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000016;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 48411 49598 . - . ID=Phyra79871;Parent=Phyra79871;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 48411 49598 . - 0 ID=Phyra79871;Parent=Phyra79871;rank=1 scaffold_44 . exon 48411 49598 . - . ID=Phyra79871.1;Parent=Phyra79871;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 42914 43782 . - . ID=Phyra95543;biotype=protein_coding;external_name=C_scaffold_44000001;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 42914 43782 . - . ID=Phyra95543;Parent=Phyra95543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 42914 43048 . - 0 ID=Phyra95543;Parent=Phyra95543;rank=6 scaffold_44 . exon 42914 43048 . - . ID=Phyra95543.6;Parent=Phyra95543;constitutive=1;rank=6 scaffold_44 . CDS 43127 43171 . - 0 ID=Phyra95543;Parent=Phyra95543;rank=5 scaffold_44 . exon 43127 43171 . - . ID=Phyra95543.5;Parent=Phyra95543;constitutive=1;rank=5 scaffold_44 . CDS 43238 43328 . - 0 ID=Phyra95543;Parent=Phyra95543;rank=4 scaffold_44 . exon 43238 43328 . - . ID=Phyra95543.4;Parent=Phyra95543;constitutive=1;ensembl_phase=2;rank=4 scaffold_44 . CDS 43392 43438 . - 0 ID=Phyra95543;Parent=Phyra95543;rank=3 scaffold_44 . exon 43392 43438 . - . ID=Phyra95543.3;Parent=Phyra95543;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_44 . CDS 43489 43650 . - 0 ID=Phyra95543;Parent=Phyra95543;rank=2 scaffold_44 . exon 43489 43650 . - . ID=Phyra95543.2;Parent=Phyra95543;constitutive=1;rank=2 scaffold_44 . CDS 43708 43782 . - 0 ID=Phyra95543;Parent=Phyra95543;rank=1 scaffold_44 . exon 43708 43782 . - . ID=Phyra95543.1;Parent=Phyra95543;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 44167 48156 . + . ID=Phyra95546;biotype=protein_coding;external_name=C_scaffold_44000004;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 44167 48156 . + . ID=Phyra95546;Parent=Phyra95546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 44167 44250 . + 0 ID=Phyra95546;Parent=Phyra95546;rank=1 scaffold_44 . exon 44167 44250 . + . ID=Phyra95546.1;Parent=Phyra95546;constitutive=1;rank=1 scaffold_44 . CDS 44284 44430 . + 0 ID=Phyra95546;Parent=Phyra95546;rank=2 scaffold_44 . exon 44284 44430 . + . ID=Phyra95546.2;Parent=Phyra95546;constitutive=1;rank=2 scaffold_44 . CDS 44617 44766 . + 0 ID=Phyra95546;Parent=Phyra95546;rank=3 scaffold_44 . exon 44617 44766 . + . ID=Phyra95546.3;Parent=Phyra95546;constitutive=1;rank=3 scaffold_44 . CDS 44818 45120 . + 0 ID=Phyra95546;Parent=Phyra95546;rank=4 scaffold_44 . exon 44818 45120 . + . ID=Phyra95546.4;Parent=Phyra95546;constitutive=1;rank=4 scaffold_44 . CDS 45193 47144 . + 0 ID=Phyra95546;Parent=Phyra95546;rank=5 scaffold_44 . exon 45193 47144 . + . ID=Phyra95546.5;Parent=Phyra95546;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_44 . CDS 47249 47352 . + 0 ID=Phyra95546;Parent=Phyra95546;rank=6 scaffold_44 . exon 47249 47352 . + . ID=Phyra95546.6;Parent=Phyra95546;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_44 . CDS 47427 47579 . + 0 ID=Phyra95546;Parent=Phyra95546;rank=7 scaffold_44 . exon 47427 47579 . + . ID=Phyra95546.7;Parent=Phyra95546;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_44 . CDS 47699 47751 . + 0 ID=Phyra95546;Parent=Phyra95546;rank=8 scaffold_44 . exon 47699 47751 . + . ID=Phyra95546.8;Parent=Phyra95546;constitutive=1;ensembl_phase=1;rank=8 scaffold_44 . CDS 47821 48156 . + 0 ID=Phyra95546;Parent=Phyra95546;rank=9 scaffold_44 . exon 47821 48156 . + . ID=Phyra95546.9;Parent=Phyra95546;constitutive=1;rank=9 scaffold_44 . repeat_region 54854 54861 . ? . description=dust scaffold_44 . repeat_region 57917 57925 . ? . description=dust scaffold_44 ensembl protein_coding_gene 54935 55987 . + . ID=Phyra71745;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_44000001;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 54935 55987 . + . ID=Phyra71745;Parent=Phyra71745;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 54935 55423 . + 0 ID=Phyra71745;Parent=Phyra71745;rank=1 scaffold_44 . exon 54935 55423 . + . ID=Phyra71745.1;Parent=Phyra71745;constitutive=1;rank=1 scaffold_44 . CDS 55491 55601 . + 0 ID=Phyra71745;Parent=Phyra71745;rank=2 scaffold_44 . exon 55491 55601 . + . ID=Phyra71745.2;Parent=Phyra71745;constitutive=1;rank=2 scaffold_44 . CDS 55667 55831 . + 0 ID=Phyra71745;Parent=Phyra71745;rank=3 scaffold_44 . exon 55667 55831 . + . ID=Phyra71745.3;Parent=Phyra71745;constitutive=1;rank=3 scaffold_44 . CDS 55904 55987 . + 0 ID=Phyra71745;Parent=Phyra71745;rank=4 scaffold_44 . exon 55904 55987 . + . ID=Phyra71745.4;Parent=Phyra71745;constitutive=1;rank=4 scaffold_44 ensembl protein_coding_gene 50965 53096 . + . ID=Phyra79872;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000017;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 50965 53096 . + . ID=Phyra79872;Parent=Phyra79872;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 50965 51069 . + 0 ID=Phyra79872;Parent=Phyra79872;rank=1 scaffold_44 . exon 50965 51069 . + . ID=Phyra79872.1;Parent=Phyra79872;constitutive=1;rank=1 scaffold_44 . CDS 51137 51281 . + 0 ID=Phyra79872;Parent=Phyra79872;rank=2 scaffold_44 . exon 51137 51281 . + . ID=Phyra79872.2;Parent=Phyra79872;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_44 . CDS 51358 53096 . + 0 ID=Phyra79872;Parent=Phyra79872;rank=3 scaffold_44 . exon 51358 53096 . + . ID=Phyra79872.3;Parent=Phyra79872;constitutive=1;ensembl_phase=1;rank=3 scaffold_44 ensembl protein_coding_gene 53269 54716 . + . ID=Phyra79873;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000018;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 53269 54716 . + . ID=Phyra79873;Parent=Phyra79873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 53269 53681 . + 0 ID=Phyra79873;Parent=Phyra79873;rank=1 scaffold_44 . exon 53269 53681 . + . ID=Phyra79873.1;Parent=Phyra79873;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 53756 54716 . + 0 ID=Phyra79873;Parent=Phyra79873;rank=2 scaffold_44 . exon 53756 54716 . + . ID=Phyra79873.2;Parent=Phyra79873;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 ensembl protein_coding_gene 59067 61127 . + . ID=Phyra79876;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000021;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 59067 61127 . + . ID=Phyra79876;Parent=Phyra79876;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 59067 61127 . + 0 ID=Phyra79876;Parent=Phyra79876;rank=1 scaffold_44 . exon 59067 61127 . + . ID=Phyra79876.1;Parent=Phyra79876;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 56097 58572 . - . ID=Phyra95549;biotype=protein_coding;external_name=C_scaffold_44000007;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 56097 58572 . - . ID=Phyra95549;Parent=Phyra95549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 56097 56112 . - 0 ID=Phyra95549;Parent=Phyra95549;rank=9 scaffold_44 . exon 56097 56112 . - . ID=Phyra95549.9;Parent=Phyra95549;constitutive=1;ensembl_phase=2;rank=9 scaffold_44 . CDS 56310 56353 . - 0 ID=Phyra95549;Parent=Phyra95549;rank=8 scaffold_44 . exon 56310 56353 . - . ID=Phyra95549.8;Parent=Phyra95549;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_44 . CDS 56383 56484 . - 0 ID=Phyra95549;Parent=Phyra95549;rank=7 scaffold_44 . exon 56383 56484 . - . ID=Phyra95549.7;Parent=Phyra95549;constitutive=1;rank=7 scaffold_44 . CDS 56566 56685 . - 0 ID=Phyra95549;Parent=Phyra95549;rank=6 scaffold_44 . exon 56566 56685 . - . ID=Phyra95549.6;Parent=Phyra95549;constitutive=1;rank=6 scaffold_44 . CDS 56750 57184 . - 0 ID=Phyra95549;Parent=Phyra95549;rank=5 scaffold_44 . exon 56750 57184 . - . ID=Phyra95549.5;Parent=Phyra95549;constitutive=1;rank=5 scaffold_44 . CDS 57252 57562 . - 0 ID=Phyra95549;Parent=Phyra95549;rank=4 scaffold_44 . exon 57252 57562 . - . ID=Phyra95549.4;Parent=Phyra95549;constitutive=1;ensembl_phase=1;rank=4 scaffold_44 . CDS 57637 57912 . - 0 ID=Phyra95549;Parent=Phyra95549;rank=3 scaffold_44 . exon 57637 57912 . - . ID=Phyra95549.3;Parent=Phyra95549;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_44 . CDS 57981 58189 . - 0 ID=Phyra95549;Parent=Phyra95549;rank=2 scaffold_44 . exon 57981 58189 . - . ID=Phyra95549.2;Parent=Phyra95549;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 58280 58572 . - 0 ID=Phyra95549;Parent=Phyra95549;rank=1 scaffold_44 . exon 58280 58572 . - . ID=Phyra95549.1;Parent=Phyra95549;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . biological_region 60161 60163 0.999 + . logic_name=eponine scaffold_44 . biological_region 63443 63448 0.999 + . logic_name=eponine scaffold_44 . biological_region 64098 64101 0.999 + . logic_name=eponine scaffold_44 . biological_region 64132 64133 0.999 - . logic_name=eponine scaffold_44 . biological_region 64294 64298 0.999 + . logic_name=eponine scaffold_44 ensembl protein_coding_gene 61523 63195 . - . ID=Phyra79877;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000022;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 61523 63195 . - . ID=Phyra79877;Parent=Phyra79877;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 61523 61750 . - 0 ID=Phyra79877;Parent=Phyra79877;rank=7 scaffold_44 . exon 61523 61750 . - . ID=Phyra79877.7;Parent=Phyra79877;constitutive=1;rank=7 scaffold_44 . CDS 61966 62016 . - 0 ID=Phyra79877;Parent=Phyra79877;rank=6 scaffold_44 . exon 61966 62016 . - . ID=Phyra79877.6;Parent=Phyra79877;constitutive=1;rank=6 scaffold_44 . CDS 62216 62488 . - 0 ID=Phyra79877;Parent=Phyra79877;rank=5 scaffold_44 . exon 62216 62488 . - . ID=Phyra79877.5;Parent=Phyra79877;constitutive=1;rank=5 scaffold_44 . CDS 62649 62796 . - 0 ID=Phyra79877;Parent=Phyra79877;rank=4 scaffold_44 . exon 62649 62796 . - . ID=Phyra79877.4;Parent=Phyra79877;constitutive=1;ensembl_phase=2;rank=4 scaffold_44 . CDS 62863 62938 . - 0 ID=Phyra79877;Parent=Phyra79877;rank=3 scaffold_44 . exon 62863 62938 . - . ID=Phyra79877.3;Parent=Phyra79877;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_44 . CDS 63009 63103 . - 0 ID=Phyra79877;Parent=Phyra79877;rank=2 scaffold_44 . exon 63009 63103 . - . ID=Phyra79877.2;Parent=Phyra79877;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 63176 63195 . - 0 ID=Phyra79877;Parent=Phyra79877;rank=1 scaffold_44 . exon 63176 63195 . - . ID=Phyra79877.1;Parent=Phyra79877;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 ensembl protein_coding_gene 63444 65177 . + . ID=Phyra79878;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000023;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 63444 65177 . + . ID=Phyra79878;Parent=Phyra79878;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 63444 63783 . + 0 ID=Phyra79878;Parent=Phyra79878;rank=1 scaffold_44 . exon 63444 63783 . + . ID=Phyra79878.1;Parent=Phyra79878;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 63857 64166 . + 0 ID=Phyra79878;Parent=Phyra79878;rank=2 scaffold_44 . exon 63857 64166 . + . ID=Phyra79878.2;Parent=Phyra79878;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_44 . CDS 64390 65028 . + 0 ID=Phyra79878;Parent=Phyra79878;rank=3 scaffold_44 . exon 64390 65028 . + . ID=Phyra79878.3;Parent=Phyra79878;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_44 . CDS 65102 65177 . + 0 ID=Phyra79878;Parent=Phyra79878;rank=4 scaffold_44 . exon 65102 65177 . + . ID=Phyra79878.4;Parent=Phyra79878;constitutive=1;ensembl_phase=2;rank=4 scaffold_44 ensembl protein_coding_gene 65464 66997 . + . ID=Phyra79879;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000024;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 65464 66997 . + . ID=Phyra79879;Parent=Phyra79879;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 65464 65963 . + 0 ID=Phyra79879;Parent=Phyra79879;rank=1 scaffold_44 . exon 65464 65963 . + . ID=Phyra79879.1;Parent=Phyra79879;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 66021 66114 . + 0 ID=Phyra79879;Parent=Phyra79879;rank=2 scaffold_44 . exon 66021 66114 . + . ID=Phyra79879.2;Parent=Phyra79879;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 66181 66279 . + 0 ID=Phyra79879;Parent=Phyra79879;rank=3 scaffold_44 . exon 66181 66279 . + . ID=Phyra79879.3;Parent=Phyra79879;constitutive=1;rank=3 scaffold_44 . CDS 66335 66520 . + 0 ID=Phyra79879;Parent=Phyra79879;rank=4 scaffold_44 . exon 66335 66520 . + . ID=Phyra79879.4;Parent=Phyra79879;constitutive=1;rank=4 scaffold_44 . CDS 66605 66768 . + 0 ID=Phyra79879;Parent=Phyra79879;rank=5 scaffold_44 . exon 66605 66768 . + . ID=Phyra79879.5;Parent=Phyra79879;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_44 . CDS 66841 66997 . + 0 ID=Phyra79879;Parent=Phyra79879;rank=6 scaffold_44 . exon 66841 66997 . + . ID=Phyra79879.6;Parent=Phyra79879;constitutive=1;ensembl_phase=2;rank=6 scaffold_44 ensembl protein_coding_gene 68938 70653 . - . ID=Phyra79880;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000025;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 68938 70653 . - . ID=Phyra79880;Parent=Phyra79880;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 68938 70653 . - 0 ID=Phyra79880;Parent=Phyra79880;rank=1 scaffold_44 . exon 68938 70653 . - . ID=Phyra79880.1;Parent=Phyra79880;constitutive=1;rank=1 scaffold_44 . repeat_region 70483 70516 . ? . description=trf scaffold_44 . repeat_region 71263 71281 . ? . description=dust scaffold_44 ensembl protein_coding_gene 71759 72544 . - . ID=Phyra79881;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000026;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 71759 72544 . - . ID=Phyra79881;Parent=Phyra79881;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 71759 72544 . - 0 ID=Phyra79881;Parent=Phyra79881;rank=1 scaffold_44 . exon 71759 72544 . - . ID=Phyra79881.1;Parent=Phyra79881;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 73554 77070 . + . ID=Phyra79882;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000027;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 73554 77070 . + . ID=Phyra79882;Parent=Phyra79882;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 73554 74353 . + 0 ID=Phyra79882;Parent=Phyra79882;rank=1 scaffold_44 . exon 73554 74353 . + . ID=Phyra79882.1;Parent=Phyra79882;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 74439 74503 . + 0 ID=Phyra79882;Parent=Phyra79882;rank=2 scaffold_44 . exon 74439 74503 . + . ID=Phyra79882.2;Parent=Phyra79882;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 74540 77070 . + 0 ID=Phyra79882;Parent=Phyra79882;rank=3 scaffold_44 . exon 74540 77070 . + . ID=Phyra79882.3;Parent=Phyra79882;constitutive=1;ensembl_phase=1;rank=3 scaffold_44 ensembl protein_coding_gene 77360 80038 . - . ID=Phyra79883;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000028;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 77360 80038 . - . ID=Phyra79883;Parent=Phyra79883;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 77360 80038 . - 0 ID=Phyra79883;Parent=Phyra79883;rank=1 scaffold_44 . exon 77360 80038 . - . ID=Phyra79883.1;Parent=Phyra79883;constitutive=1;rank=1 scaffold_44 . biological_region 79928 79933 0.999 + . logic_name=eponine scaffold_44 . biological_region 83255 83257 0.999 + . logic_name=eponine scaffold_44 ensembl protein_coding_gene 80826 83049 . - . ID=Phyra79884;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000029;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 80826 83049 . - . ID=Phyra79884;Parent=Phyra79884;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 80826 82052 . - 0 ID=Phyra79884;Parent=Phyra79884;rank=5 scaffold_44 . exon 80826 82052 . - . ID=Phyra79884.5;Parent=Phyra79884;constitutive=1;rank=5 scaffold_44 . CDS 82124 82487 . - 0 ID=Phyra79884;Parent=Phyra79884;rank=4 scaffold_44 . exon 82124 82487 . - . ID=Phyra79884.4;Parent=Phyra79884;constitutive=1;ensembl_phase=2;rank=4 scaffold_44 . CDS 82554 82720 . - 0 ID=Phyra79884;Parent=Phyra79884;rank=3 scaffold_44 . exon 82554 82720 . - . ID=Phyra79884.3;Parent=Phyra79884;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_44 . CDS 82791 82843 . - 0 ID=Phyra79884;Parent=Phyra79884;rank=2 scaffold_44 . exon 82791 82843 . - . ID=Phyra79884.2;Parent=Phyra79884;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 82926 83049 . - 0 ID=Phyra79884;Parent=Phyra79884;rank=1 scaffold_44 . exon 82926 83049 . - . ID=Phyra79884.1;Parent=Phyra79884;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 83184 84887 . + . ID=Phyra79885;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000030;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 83184 84887 . + . ID=Phyra79885;Parent=Phyra79885;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 83184 83737 . + 0 ID=Phyra79885;Parent=Phyra79885;rank=1 scaffold_44 . exon 83184 83737 . + . ID=Phyra79885.1;Parent=Phyra79885;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 83804 83960 . + 0 ID=Phyra79885;Parent=Phyra79885;rank=2 scaffold_44 . exon 83804 83960 . + . ID=Phyra79885.2;Parent=Phyra79885;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 84310 84633 . + 0 ID=Phyra79885;Parent=Phyra79885;rank=3 scaffold_44 . exon 84310 84633 . + . ID=Phyra79885.3;Parent=Phyra79885;constitutive=1;rank=3 scaffold_44 . CDS 84717 84887 . + 0 ID=Phyra79885;Parent=Phyra79885;rank=4 scaffold_44 . exon 84717 84887 . + . ID=Phyra79885.4;Parent=Phyra79885;constitutive=1;rank=4 scaffold_44 . repeat_region 92261 92310 . ? . description=dust scaffold_44 ensembl protein_coding_gene 90972 92564 . - . ID=Phyra79886;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000031;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 90972 92564 . - . ID=Phyra79886;Parent=Phyra79886;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 90972 90990 . - 0 ID=Phyra79886;Parent=Phyra79886;rank=4 scaffold_44 . exon 90972 90990 . - . ID=Phyra79886.4;Parent=Phyra79886;constitutive=1;ensembl_phase=2;rank=4 scaffold_44 . CDS 91023 91636 . - 0 ID=Phyra79886;Parent=Phyra79886;rank=3 scaffold_44 . exon 91023 91636 . - . ID=Phyra79886.3;Parent=Phyra79886;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_44 . CDS 91711 92114 . - 0 ID=Phyra79886;Parent=Phyra79886;rank=2 scaffold_44 . exon 91711 92114 . - . ID=Phyra79886.2;Parent=Phyra79886;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 92495 92564 . - 0 ID=Phyra79886;Parent=Phyra79886;rank=1 scaffold_44 . exon 92495 92564 . - . ID=Phyra79886.1;Parent=Phyra79886;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 93817 99198 . + . ID=Phyra79887;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000032;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 93817 99198 . + . ID=Phyra79887;Parent=Phyra79887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 93817 96652 . + 0 ID=Phyra79887;Parent=Phyra79887;rank=1 scaffold_44 . exon 93817 96652 . + . ID=Phyra79887.1;Parent=Phyra79887;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 96938 97170 . + 0 ID=Phyra79887;Parent=Phyra79887;rank=2 scaffold_44 . exon 96938 97170 . + . ID=Phyra79887.2;Parent=Phyra79887;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 97243 97697 . + 0 ID=Phyra79887;Parent=Phyra79887;rank=3 scaffold_44 . exon 97243 97697 . + . ID=Phyra79887.3;Parent=Phyra79887;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_44 . CDS 98121 99198 . + 0 ID=Phyra79887;Parent=Phyra79887;rank=4 scaffold_44 . exon 98121 99198 . + . ID=Phyra79887.4;Parent=Phyra79887;constitutive=1;ensembl_phase=2;rank=4 scaffold_44 . biological_region 100703 100705 0.999 + . logic_name=eponine scaffold_44 . biological_region 100740 100742 0.999 + . logic_name=eponine scaffold_44 . biological_region 100823 100828 0.999 + . logic_name=eponine scaffold_44 . biological_region 101510 101516 0.999 + . logic_name=eponine scaffold_44 . biological_region 102761 102765 0.999 + . logic_name=eponine scaffold_44 . biological_region 102911 102912 0.999 - . logic_name=eponine scaffold_44 . biological_region 102963 102970 0.999 + . logic_name=eponine scaffold_44 . biological_region 103158 103161 0.999 + . logic_name=eponine scaffold_44 . biological_region 106130 106132 0.999 - . logic_name=eponine scaffold_44 . biological_region 106439 106442 0.999 + . logic_name=eponine scaffold_44 . biological_region 107217 107221 0.999 - . logic_name=eponine scaffold_44 . biological_region 108016 108017 0.999 - . logic_name=eponine scaffold_44 . biological_region 108157 108158 0.999 + . logic_name=eponine scaffold_44 . biological_region 108206 108206 0.999 - . logic_name=eponine scaffold_44 . biological_region 108246 108248 0.999 + . logic_name=eponine scaffold_44 ensembl protein_coding_gene 104534 105064 . - . ID=Phyra71746;biotype=protein_coding;description=Elicitin-like protein RAL6 [Source:UniProtKB/TrEMBL%3BAcc:Q2N0B3];external_name=fgenesh1_pm.C_scaffold_44000002;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 104534 105064 . - . ID=Phyra71746;Parent=Phyra71746;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 104534 105064 . - 0 ID=Phyra71746;Parent=Phyra71746;rank=1 scaffold_44 . exon 104534 105064 . - . ID=Phyra71746.1;Parent=Phyra71746;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 99476 101485 . - . ID=Phyra79888;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000033;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 99476 101485 . - . ID=Phyra79888;Parent=Phyra79888;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 99476 101357 . - 0 ID=Phyra79888;Parent=Phyra79888;rank=2 scaffold_44 . exon 99476 101357 . - . ID=Phyra79888.2;Parent=Phyra79888;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 101442 101485 . - 0 ID=Phyra79888;Parent=Phyra79888;rank=1 scaffold_44 . exon 101442 101485 . - . ID=Phyra79888.1;Parent=Phyra79888;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 ensembl protein_coding_gene 102702 104252 . + . ID=Phyra79889;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000034;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 102702 104252 . + . ID=Phyra79889;Parent=Phyra79889;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 102702 104252 . + 0 ID=Phyra79889;Parent=Phyra79889;rank=1 scaffold_44 . exon 102702 104252 . + . ID=Phyra79889.1;Parent=Phyra79889;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 105468 106123 . - . ID=Phyra79891;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000036;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 105468 106123 . - . ID=Phyra79891;Parent=Phyra79891;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 105468 105491 . - 0 ID=Phyra79891;Parent=Phyra79891;rank=2 scaffold_44 . exon 105468 105491 . - . ID=Phyra79891.2;Parent=Phyra79891;constitutive=1;rank=2 scaffold_44 . CDS 105527 106123 . - 0 ID=Phyra79891;Parent=Phyra79891;rank=1 scaffold_44 . exon 105527 106123 . - . ID=Phyra79891.1;Parent=Phyra79891;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 106390 106978 . - . ID=Phyra79892;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000037;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 106390 106978 . - . ID=Phyra79892;Parent=Phyra79892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 106390 106862 . - 0 ID=Phyra79892;Parent=Phyra79892;rank=2 scaffold_44 . exon 106390 106862 . - . ID=Phyra79892.2;Parent=Phyra79892;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 106921 106978 . - 0 ID=Phyra79892;Parent=Phyra79892;rank=1 scaffold_44 . exon 106921 106978 . - . ID=Phyra79892.1;Parent=Phyra79892;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 107543 111182 . + . ID=Phyra79893;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000038;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 107543 111182 . + . ID=Phyra79893;Parent=Phyra79893;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 107543 108900 . + 0 ID=Phyra79893;Parent=Phyra79893;rank=1 scaffold_44 . exon 107543 108900 . + . ID=Phyra79893.1;Parent=Phyra79893;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 108971 109241 . + 0 ID=Phyra79893;Parent=Phyra79893;rank=2 scaffold_44 . CDS 109321 109447 . + 0 ID=Phyra79893;Parent=Phyra79893;rank=3 scaffold_44 . CDS 109674 109907 . + 0 ID=Phyra79893;Parent=Phyra79893;rank=4 scaffold_44 . CDS 109993 111182 . + 0 ID=Phyra79893;Parent=Phyra79893;rank=5 scaffold_44 . repeat_region 111674 111717 . ? . description=trf scaffold_44 . repeat_region 111674 111717 . ? . description=dust scaffold_44 . repeat_region 113064 113106 . ? . description=dust scaffold_44 . exon 108971 109241 . + . ID=Phyra79893.2;Parent=Phyra79893;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . exon 109321 109447 . + . ID=Phyra79893.3;Parent=Phyra79893;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_44 . exon 109674 109907 . + . ID=Phyra79893.4;Parent=Phyra79893;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_44 . exon 109993 111182 . + . ID=Phyra79893.5;Parent=Phyra79893;constitutive=1;ensembl_phase=1;rank=5 scaffold_44 ensembl protein_coding_gene 111345 112182 . + . ID=Phyra79894;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000039;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 111345 112182 . + . ID=Phyra79894;Parent=Phyra79894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 111345 111667 . + 0 ID=Phyra79894;Parent=Phyra79894;rank=1 scaffold_44 . exon 111345 111667 . + . ID=Phyra79894.1;Parent=Phyra79894;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 111812 112025 . + 0 ID=Phyra79894;Parent=Phyra79894;rank=2 scaffold_44 . exon 111812 112025 . + . ID=Phyra79894.2;Parent=Phyra79894;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 112108 112182 . + 0 ID=Phyra79894;Parent=Phyra79894;rank=3 scaffold_44 . exon 112108 112182 . + . ID=Phyra79894.3;Parent=Phyra79894;constitutive=1;rank=3 scaffold_44 ensembl protein_coding_gene 114224 116911 . + . ID=Phyra79895;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000040;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 114224 116911 . + . ID=Phyra79895;Parent=Phyra79895;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 114224 114237 . + 0 ID=Phyra79895;Parent=Phyra79895;rank=1 scaffold_44 . exon 114224 114237 . + . ID=Phyra79895.1;Parent=Phyra79895;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 114266 114473 . + 0 ID=Phyra79895;Parent=Phyra79895;rank=2 scaffold_44 . exon 114266 114473 . + . ID=Phyra79895.2;Parent=Phyra79895;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 114539 116416 . + 0 ID=Phyra79895;Parent=Phyra79895;rank=3 scaffold_44 . exon 114539 116416 . + . ID=Phyra79895.3;Parent=Phyra79895;constitutive=1;rank=3 scaffold_44 . CDS 116505 116536 . + 0 ID=Phyra79895;Parent=Phyra79895;rank=4 scaffold_44 . exon 116505 116536 . + . ID=Phyra79895.4;Parent=Phyra79895;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_44 . CDS 116581 116911 . + 0 ID=Phyra79895;Parent=Phyra79895;rank=5 scaffold_44 . exon 116581 116911 . + . ID=Phyra79895.5;Parent=Phyra79895;constitutive=1;ensembl_phase=2;rank=5 scaffold_44 ensembl protein_coding_gene 117345 117883 . - . ID=Phyra79896;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000041;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 117345 117883 . - . ID=Phyra79896;Parent=Phyra79896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 117345 117487 . - 0 ID=Phyra79896;Parent=Phyra79896;rank=2 scaffold_44 . exon 117345 117487 . - . ID=Phyra79896.2;Parent=Phyra79896;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 117544 117883 . - 0 ID=Phyra79896;Parent=Phyra79896;rank=1 scaffold_44 . exon 117544 117883 . - . ID=Phyra79896.1;Parent=Phyra79896;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 118171 119832 . + . ID=Phyra79897;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000042;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 118171 119832 . + . ID=Phyra79897;Parent=Phyra79897;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 118171 119832 . + 0 ID=Phyra79897;Parent=Phyra79897;rank=1 scaffold_44 . exon 118171 119832 . + . ID=Phyra79897.1;Parent=Phyra79897;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 122934 129915 . - . ID=Phyra79898;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000043;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 122934 129915 . - . ID=Phyra79898;Parent=Phyra79898;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 122934 123079 . - 0 ID=Phyra79898;Parent=Phyra79898;rank=5 scaffold_44 . exon 122934 123079 . - . ID=Phyra79898.5;Parent=Phyra79898;constitutive=1;ensembl_phase=1;rank=5 scaffold_44 . CDS 123142 123567 . - 0 ID=Phyra79898;Parent=Phyra79898;rank=4 scaffold_44 . exon 123142 123567 . - . ID=Phyra79898.4;Parent=Phyra79898;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_44 . CDS 124170 126354 . - 0 ID=Phyra79898;Parent=Phyra79898;rank=3 scaffold_44 . exon 124170 126354 . - . ID=Phyra79898.3;Parent=Phyra79898;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_44 . CDS 126463 126874 . - 0 ID=Phyra79898;Parent=Phyra79898;rank=2 scaffold_44 . exon 126463 126874 . - . ID=Phyra79898.2;Parent=Phyra79898;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 127211 129915 . - 0 ID=Phyra79898;Parent=Phyra79898;rank=1 scaffold_44 . exon 127211 129915 . - . ID=Phyra79898.1;Parent=Phyra79898;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . biological_region 129406 129406 0.999 + . logic_name=eponine scaffold_44 . repeat_region 129516 129558 . ? . description=trf scaffold_44 . biological_region 129529 129533 0.999 + . logic_name=eponine scaffold_44 . biological_region 129806 129808 0.999 + . logic_name=eponine scaffold_44 . biological_region 129821 129823 0.999 + . logic_name=eponine scaffold_44 . biological_region 132003 132005 0.999 - . logic_name=eponine scaffold_44 . biological_region 132299 132301 0.999 + . logic_name=eponine scaffold_44 . biological_region 134131 134133 0.999 - . logic_name=eponine scaffold_44 . biological_region 135249 135254 0.999 + . logic_name=eponine scaffold_44 . biological_region 135629 135633 0.999 - . logic_name=eponine scaffold_44 . biological_region 136252 136254 0.999 - . logic_name=eponine scaffold_44 ensembl protein_coding_gene 131838 132449 . - . ID=Phyra79899;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000044;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 131838 132449 . - . ID=Phyra79899;Parent=Phyra79899;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 131838 132449 . - 0 ID=Phyra79899;Parent=Phyra79899;rank=1 scaffold_44 . exon 131838 132449 . - . ID=Phyra79899.1;Parent=Phyra79899;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 134400 135557 . + . ID=Phyra79900;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000045;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 134400 135557 . + . ID=Phyra79900;Parent=Phyra79900;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 134400 135557 . + 0 ID=Phyra79900;Parent=Phyra79900;rank=1 scaffold_44 . exon 134400 135557 . + . ID=Phyra79900.1;Parent=Phyra79900;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 135856 138199 . + . ID=Phyra79901;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000046;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 135856 138199 . + . ID=Phyra79901;Parent=Phyra79901;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 135856 135901 . + 0 ID=Phyra79901;Parent=Phyra79901;rank=1 scaffold_44 . exon 135856 135901 . + . ID=Phyra79901.1;Parent=Phyra79901;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 135972 136044 . + 0 ID=Phyra79901;Parent=Phyra79901;rank=2 scaffold_44 . exon 135972 136044 . + . ID=Phyra79901.2;Parent=Phyra79901;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_44 . CDS 136119 136437 . + 0 ID=Phyra79901;Parent=Phyra79901;rank=3 scaffold_44 . exon 136119 136437 . + . ID=Phyra79901.3;Parent=Phyra79901;constitutive=1;ensembl_phase=2;rank=3 scaffold_44 . CDS 136505 136768 . + 0 ID=Phyra79901;Parent=Phyra79901;rank=4 scaffold_44 . exon 136505 136768 . + . ID=Phyra79901.4;Parent=Phyra79901;constitutive=1;rank=4 scaffold_44 . CDS 136969 137925 . + 0 ID=Phyra79901;Parent=Phyra79901;rank=5 scaffold_44 . exon 136969 137925 . + . ID=Phyra79901.5;Parent=Phyra79901;constitutive=1;rank=5 scaffold_44 . CDS 137993 138199 . + 0 ID=Phyra79901;Parent=Phyra79901;rank=6 scaffold_44 . exon 137993 138199 . + . ID=Phyra79901.6;Parent=Phyra79901;constitutive=1;rank=6 scaffold_44 ensembl protein_coding_gene 138406 139967 . - . ID=Phyra79902;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000047;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 138406 139967 . - . ID=Phyra79902;Parent=Phyra79902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 138406 139429 . - 0 ID=Phyra79902;Parent=Phyra79902;rank=2 scaffold_44 . exon 138406 139429 . - . ID=Phyra79902.2;Parent=Phyra79902;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 139852 139967 . - 0 ID=Phyra79902;Parent=Phyra79902;rank=1 scaffold_44 . repeat_region 138752 138831 . ? . description=dust scaffold_44 . repeat_region 138752 138837 . + . description=(CTG)n scaffold_44 . repeat_region 141160 141217 . + . description=(CAG)n scaffold_44 . repeat_region 141172 141217 . ? . description=dust scaffold_44 . repeat_region 144905 144940 . ? . description=dust scaffold_44 . repeat_region 148285 148546 . ? . description=dust scaffold_44 . exon 139852 139967 . - . ID=Phyra79902.1;Parent=Phyra79902;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 ensembl protein_coding_gene 140581 141563 . + . ID=Phyra79903;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000048;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 140581 141563 . + . ID=Phyra79903;Parent=Phyra79903;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 140581 141141 . + 0 ID=Phyra79903;Parent=Phyra79903;rank=1 scaffold_44 . exon 140581 141141 . + . ID=Phyra79903.1;Parent=Phyra79903;constitutive=1;rank=1 scaffold_44 . CDS 141180 141563 . + 0 ID=Phyra79903;Parent=Phyra79903;rank=2 scaffold_44 . exon 141180 141563 . + . ID=Phyra79903.2;Parent=Phyra79903;constitutive=1;rank=2 scaffold_44 ensembl protein_coding_gene 142124 144113 . - . ID=Phyra79904;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000049;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 142124 144113 . - . ID=Phyra79904;Parent=Phyra79904;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 142124 143286 . - 0 ID=Phyra79904;Parent=Phyra79904;rank=2 scaffold_44 . exon 142124 143286 . - . ID=Phyra79904.2;Parent=Phyra79904;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 143351 144113 . - 0 ID=Phyra79904;Parent=Phyra79904;rank=1 scaffold_44 . exon 143351 144113 . - . ID=Phyra79904.1;Parent=Phyra79904;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 144284 144882 . + . ID=Phyra79905;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000050;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 144284 144882 . + . ID=Phyra79905;Parent=Phyra79905;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 144284 144329 . + 0 ID=Phyra79905;Parent=Phyra79905;rank=1 scaffold_44 . exon 144284 144329 . + . ID=Phyra79905.1;Parent=Phyra79905;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 144445 144791 . + 0 ID=Phyra79905;Parent=Phyra79905;rank=2 scaffold_44 . exon 144445 144791 . + . ID=Phyra79905.2;Parent=Phyra79905;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 144862 144882 . + 0 ID=Phyra79905;Parent=Phyra79905;rank=3 scaffold_44 . exon 144862 144882 . + . ID=Phyra79905.3;Parent=Phyra79905;constitutive=1;rank=3 scaffold_44 ensembl protein_coding_gene 147392 148819 . - . ID=Phyra79906;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000051;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 147392 148819 . - . ID=Phyra79906;Parent=Phyra79906;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 147392 147496 . - 0 ID=Phyra79906;Parent=Phyra79906;rank=4 scaffold_44 . exon 147392 147496 . - . ID=Phyra79906.4;Parent=Phyra79906;constitutive=1;rank=4 scaffold_44 . CDS 147603 148031 . - 0 ID=Phyra79906;Parent=Phyra79906;rank=3 scaffold_44 . exon 147603 148031 . - . ID=Phyra79906.3;Parent=Phyra79906;constitutive=1;rank=3 scaffold_44 . CDS 148134 148247 . - 0 ID=Phyra79906;Parent=Phyra79906;rank=2 scaffold_44 . exon 148134 148247 . - . ID=Phyra79906.2;Parent=Phyra79906;constitutive=1;rank=2 scaffold_44 . CDS 148550 148819 . - 0 ID=Phyra79906;Parent=Phyra79906;rank=1 scaffold_44 . biological_region 148600 148600 0.999 + . logic_name=eponine scaffold_44 . biological_region 149818 149821 0.999 - . logic_name=eponine scaffold_44 . repeat_region 150126 150159 . ? . description=trf scaffold_44 . repeat_region 150127 150178 . ? . description=trf scaffold_44 . biological_region 152769 152772 0.999 - . logic_name=eponine scaffold_44 . repeat_region 153702 153747 . ? . description=trf scaffold_44 . exon 148550 148819 . - . ID=Phyra79906.1;Parent=Phyra79906;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 149024 149869 . - . ID=Phyra79907;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000052;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 149024 149869 . - . ID=Phyra79907;Parent=Phyra79907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 149024 149869 . - 0 ID=Phyra79907;Parent=Phyra79907;rank=1 scaffold_44 . exon 149024 149869 . - . ID=Phyra79907.1;Parent=Phyra79907;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 152418 153560 . + . ID=Phyra79908;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000053;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 152418 153560 . + . ID=Phyra79908;Parent=Phyra79908;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 152418 152435 . + 0 ID=Phyra79908;Parent=Phyra79908;rank=1 scaffold_44 . exon 152418 152435 . + . ID=Phyra79908.1;Parent=Phyra79908;constitutive=1;rank=1 scaffold_44 . CDS 152638 152898 . + 0 ID=Phyra79908;Parent=Phyra79908;rank=2 scaffold_44 . exon 152638 152898 . + . ID=Phyra79908.2;Parent=Phyra79908;constitutive=1;rank=2 scaffold_44 . CDS 153009 153560 . + 0 ID=Phyra79908;Parent=Phyra79908;rank=3 scaffold_44 . exon 153009 153560 . + . ID=Phyra79908.3;Parent=Phyra79908;constitutive=1;rank=3 scaffold_44 ensembl protein_coding_gene 163534 164142 . - . ID=Phyra71747;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_44000003;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 163534 164142 . - . ID=Phyra71747;Parent=Phyra71747;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 163534 164142 . - 0 ID=Phyra71747;Parent=Phyra71747;rank=1 scaffold_44 . exon 163534 164142 . - . ID=Phyra71747.1;Parent=Phyra71747;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 160196 161233 . + . ID=Phyra79909;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000054;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 160196 161233 . + . ID=Phyra79909;Parent=Phyra79909;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 160196 160443 . + 0 ID=Phyra79909;Parent=Phyra79909;rank=1 scaffold_44 . exon 160196 160443 . + . ID=Phyra79909.1;Parent=Phyra79909;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 160588 161233 . + 0 ID=Phyra79909;Parent=Phyra79909;rank=2 scaffold_44 . exon 160588 161233 . + . ID=Phyra79909.2;Parent=Phyra79909;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 ensembl protein_coding_gene 161388 162740 . - . ID=Phyra79910;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000055;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 161388 162740 . - . ID=Phyra79910;Parent=Phyra79910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 161388 162740 . - 0 ID=Phyra79910;Parent=Phyra79910;rank=1 scaffold_44 . exon 161388 162740 . - . ID=Phyra79910.1;Parent=Phyra79910;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 164359 165270 . - . ID=Phyra79912;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000057;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 164359 165270 . - . ID=Phyra79912;Parent=Phyra79912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 164359 165270 . - 0 ID=Phyra79912;Parent=Phyra79912;rank=1 scaffold_44 . exon 164359 165270 . - . ID=Phyra79912.1;Parent=Phyra79912;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 165845 167569 . - . ID=Phyra79913;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000058;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 165845 167569 . - . ID=Phyra79913;Parent=Phyra79913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 165845 167569 . - 0 ID=Phyra79913;Parent=Phyra79913;rank=1 scaffold_44 . exon 165845 167569 . - . ID=Phyra79913.1;Parent=Phyra79913;constitutive=1;rank=1 scaffold_44 . repeat_region 168606 168617 . ? . description=dust scaffold_44 . repeat_region 168721 168742 . ? . description=trf scaffold_44 . biological_region 169692 169693 0.999 - . logic_name=eponine scaffold_44 . repeat_region 169757 169797 . ? . description=trf scaffold_44 . repeat_region 170326 170515 . ? . description=trf scaffold_44 . repeat_region 170663 170693 . ? . description=trf scaffold_44 . biological_region 171644 171647 0.999 + . logic_name=eponine scaffold_44 . biological_region 172532 172534 0.999 + . logic_name=eponine scaffold_44 . repeat_region 173420 173507 . ? . description=trf scaffold_44 . biological_region 173908 173917 0.999 + . logic_name=eponine scaffold_44 . biological_region 173958 173964 0.999 + . logic_name=eponine scaffold_44 . biological_region 173961 173967 0.999 - . logic_name=eponine scaffold_44 . biological_region 173985 173988 0.999 - . logic_name=eponine scaffold_44 . biological_region 174012 174020 0.999 - . logic_name=eponine scaffold_44 . biological_region 174026 174037 0.999 - . logic_name=eponine scaffold_44 . biological_region 174628 174628 0.999 - . logic_name=eponine scaffold_44 ensembl protein_coding_gene 169348 171432 . + . ID=Phyra79914;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000059;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 169348 171432 . + . ID=Phyra79914;Parent=Phyra79914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 169348 171432 . + 0 ID=Phyra79914;Parent=Phyra79914;rank=1 scaffold_44 . exon 169348 171432 . + . ID=Phyra79914.1;Parent=Phyra79914;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 171594 172593 . + . ID=Phyra79915;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000060;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 171594 172593 . + . ID=Phyra79915;Parent=Phyra79915;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 171594 172403 . + 0 ID=Phyra79915;Parent=Phyra79915;rank=1 scaffold_44 . exon 171594 172403 . + . ID=Phyra79915.1;Parent=Phyra79915;constitutive=1;rank=1 scaffold_44 . CDS 172477 172593 . + 0 ID=Phyra79915;Parent=Phyra79915;rank=2 scaffold_44 . exon 172477 172593 . + . ID=Phyra79915.2;Parent=Phyra79915;constitutive=1;rank=2 scaffold_44 ensembl protein_coding_gene 173700 177362 . + . ID=Phyra79916;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000061;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 173700 177362 . + . ID=Phyra79916;Parent=Phyra79916;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 173700 175710 . + 0 ID=Phyra79916;Parent=Phyra79916;rank=1 scaffold_44 . exon 173700 175710 . + . ID=Phyra79916.1;Parent=Phyra79916;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 175778 175873 . + 0 ID=Phyra79916;Parent=Phyra79916;rank=2 scaffold_44 . exon 175778 175873 . + . ID=Phyra79916.2;Parent=Phyra79916;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 175950 176009 . + 0 ID=Phyra79916;Parent=Phyra79916;rank=3 scaffold_44 . exon 175950 176009 . + . ID=Phyra79916.3;Parent=Phyra79916;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_44 . CDS 176083 177362 . + 0 ID=Phyra79916;Parent=Phyra79916;rank=4 scaffold_44 . exon 176083 177362 . + . ID=Phyra79916.4;Parent=Phyra79916;constitutive=1;ensembl_phase=1;rank=4 scaffold_44 ensembl protein_coding_gene 177703 179169 . + . ID=Phyra79917;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000062;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 177703 179169 . + . ID=Phyra79917;Parent=Phyra79917;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 177703 178548 . + 0 ID=Phyra79917;Parent=Phyra79917;rank=1 scaffold_44 . exon 177703 178548 . + . ID=Phyra79917.1;Parent=Phyra79917;constitutive=1;rank=1 scaffold_44 . CDS 178622 178792 . + 0 ID=Phyra79917;Parent=Phyra79917;rank=2 scaffold_44 . CDS 178885 179169 . + 0 ID=Phyra79917;Parent=Phyra79917;rank=3 scaffold_44 . exon 178622 178792 . + . ID=Phyra79917.2;Parent=Phyra79917;constitutive=1;rank=2 scaffold_44 . exon 178885 179169 . + . ID=Phyra79917.3;Parent=Phyra79917;constitutive=1;rank=3 scaffold_44 ensembl protein_coding_gene 186506 189147 . - . ID=Phyra79918;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000063;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 186506 189147 . - . ID=Phyra79918;Parent=Phyra79918;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 186506 186913 . - 0 ID=Phyra79918;Parent=Phyra79918;rank=7 scaffold_44 . exon 186506 186913 . - . ID=Phyra79918.7;Parent=Phyra79918;constitutive=1;rank=7 scaffold_44 . CDS 186999 187520 . - 0 ID=Phyra79918;Parent=Phyra79918;rank=6 scaffold_44 . exon 186999 187520 . - . ID=Phyra79918.6;Parent=Phyra79918;constitutive=1;rank=6 scaffold_44 . CDS 187586 187742 . - 0 ID=Phyra79918;Parent=Phyra79918;rank=5 scaffold_44 . exon 187586 187742 . - . ID=Phyra79918.5;Parent=Phyra79918;constitutive=1;ensembl_phase=2;rank=5 scaffold_44 . CDS 187814 188289 . - 0 ID=Phyra79918;Parent=Phyra79918;rank=4 scaffold_44 . exon 187814 188289 . - . ID=Phyra79918.4;Parent=Phyra79918;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_44 . CDS 188374 188721 . - 0 ID=Phyra79918;Parent=Phyra79918;rank=3 scaffold_44 . CDS 188787 188971 . - 0 ID=Phyra79918;Parent=Phyra79918;rank=2 scaffold_44 . CDS 189051 189147 . - 0 ID=Phyra79918;Parent=Phyra79918;rank=1 scaffold_44 . biological_region 190840 190842 0.999 + . logic_name=eponine scaffold_44 . biological_region 190926 190926 0.999 - . logic_name=eponine scaffold_44 . biological_region 193913 193917 0.999 - . logic_name=eponine scaffold_44 . biological_region 194881 194885 0.999 + . logic_name=eponine scaffold_44 . biological_region 194950 194953 0.999 - . logic_name=eponine scaffold_44 . biological_region 195176 195182 0.999 - . logic_name=eponine scaffold_44 . biological_region 195225 195231 0.999 - . logic_name=eponine scaffold_44 . biological_region 195285 195285 0.999 + . logic_name=eponine scaffold_44 . biological_region 196033 196036 0.999 - . logic_name=eponine scaffold_44 ensembl protein_coding_gene 195708 196507 . - . ID=Phyra49022;biotype=protein_coding;external_name=gwEuk.44.1.1;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 195708 196507 . - . ID=Phyra49022;Parent=Phyra49022;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 195708 196116 . - 0 ID=Phyra49022;Parent=Phyra49022;rank=2 scaffold_44 . exon 195708 196116 . - . ID=Phyra49022.2;Parent=Phyra49022;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 196200 196507 . - 0 ID=Phyra49022;Parent=Phyra49022;rank=1 scaffold_44 . exon 196200 196507 . - . ID=Phyra49022.1;Parent=Phyra49022;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . exon 188374 188721 . - . ID=Phyra79918.3;Parent=Phyra79918;constitutive=1;rank=3 scaffold_44 . exon 188787 188971 . - . ID=Phyra79918.2;Parent=Phyra79918;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . exon 189051 189147 . - . ID=Phyra79918.1;Parent=Phyra79918;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 190791 192326 . + . ID=Phyra79919;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000064;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 190791 192326 . + . ID=Phyra79919;Parent=Phyra79919;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 190791 192326 . + 0 ID=Phyra79919;Parent=Phyra79919;rank=1 scaffold_44 . exon 190791 192326 . + . ID=Phyra79919.1;Parent=Phyra79919;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 192376 194022 . - . ID=Phyra79920;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000065;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 192376 194022 . - . ID=Phyra79920;Parent=Phyra79920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 192376 194022 . - 0 ID=Phyra79920;Parent=Phyra79920;rank=1 scaffold_44 . exon 192376 194022 . - . ID=Phyra79920.1;Parent=Phyra79920;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 194375 195253 . - . ID=Phyra79921;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000066;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 194375 195253 . - . ID=Phyra79921;Parent=Phyra79921;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 194375 195253 . - 0 ID=Phyra79921;Parent=Phyra79921;rank=1 scaffold_44 . exon 194375 195253 . - . ID=Phyra79921.1;Parent=Phyra79921;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 196776 198093 . + . ID=Phyra79923;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000068;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 196776 198093 . + . ID=Phyra79923;Parent=Phyra79923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 196776 197307 . + 0 ID=Phyra79923;Parent=Phyra79923;rank=1 scaffold_44 . exon 196776 197307 . + . ID=Phyra79923.1;Parent=Phyra79923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 197370 197464 . + 0 ID=Phyra79923;Parent=Phyra79923;rank=2 scaffold_44 . exon 197370 197464 . + . ID=Phyra79923.2;Parent=Phyra79923;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 197530 198093 . + 0 ID=Phyra79923;Parent=Phyra79923;rank=3 scaffold_44 . exon 197530 198093 . + . ID=Phyra79923.3;Parent=Phyra79923;constitutive=1;rank=3 scaffold_44 ensembl protein_coding_gene 198299 199272 . - . ID=Phyra79924;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000069;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 198299 199272 . - . ID=Phyra79924;Parent=Phyra79924;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 198299 198320 . - 0 ID=Phyra79924;Parent=Phyra79924;rank=2 scaffold_44 . exon 198299 198320 . - . ID=Phyra79924.2;Parent=Phyra79924;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 198347 199272 . - 0 ID=Phyra79924;Parent=Phyra79924;rank=1 scaffold_44 . exon 198347 199272 . - . ID=Phyra79924.1;Parent=Phyra79924;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 ensembl protein_coding_gene 200335 203685 . + . ID=Phyra79925;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000070;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 200335 203685 . + . ID=Phyra79925;Parent=Phyra79925;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 200335 203507 . + 0 ID=Phyra79925;Parent=Phyra79925;rank=1 scaffold_44 . exon 200335 203507 . + . ID=Phyra79925.1;Parent=Phyra79925;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 203583 203685 . + 0 ID=Phyra79925;Parent=Phyra79925;rank=2 scaffold_44 . exon 203583 203685 . + . ID=Phyra79925.2;Parent=Phyra79925;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 ensembl protein_coding_gene 204018 205091 . - . ID=Phyra79926;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000071;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 204018 205091 . - . ID=Phyra79926;Parent=Phyra79926;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 204018 205091 . - 0 ID=Phyra79926;Parent=Phyra79926;rank=1 scaffold_44 . exon 204018 205091 . - . ID=Phyra79926.1;Parent=Phyra79926;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 206303 207802 . + . ID=Phyra79927;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000072;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 206303 207802 . + . ID=Phyra79927;Parent=Phyra79927;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 206303 207802 . + 0 ID=Phyra79927;Parent=Phyra79927;rank=1 scaffold_44 . exon 206303 207802 . + . ID=Phyra79927.1;Parent=Phyra79927;constitutive=1;rank=1 scaffold_44 . biological_region 207994 207996 0.999 - . logic_name=eponine scaffold_44 . repeat_region 210192 210199 . ? . description=dust scaffold_44 . repeat_region 217528 217551 . ? . description=trf scaffold_44 . repeat_region 217528 217551 . ? . description=dust scaffold_44 ensembl protein_coding_gene 208526 209045 . - . ID=Phyra79928;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000073;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 208526 209045 . - . ID=Phyra79928;Parent=Phyra79928;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 208526 208738 . - 0 ID=Phyra79928;Parent=Phyra79928;rank=3 scaffold_44 . exon 208526 208738 . - . ID=Phyra79928.3;Parent=Phyra79928;constitutive=1;rank=3 scaffold_44 . CDS 208795 208920 . - 0 ID=Phyra79928;Parent=Phyra79928;rank=2 scaffold_44 . exon 208795 208920 . - . ID=Phyra79928.2;Parent=Phyra79928;constitutive=1;rank=2 scaffold_44 . CDS 208977 209045 . - 0 ID=Phyra79928;Parent=Phyra79928;rank=1 scaffold_44 . exon 208977 209045 . - . ID=Phyra79928.1;Parent=Phyra79928;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 216892 218380 . + . ID=Phyra95553;biotype=protein_coding;external_name=C_scaffold_44000011;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 216892 218380 . + . ID=Phyra95553;Parent=Phyra95553;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 216892 216939 . + 0 ID=Phyra95553;Parent=Phyra95553;rank=1 scaffold_44 . exon 216892 216939 . + . ID=Phyra95553.1;Parent=Phyra95553;constitutive=1;rank=1 scaffold_44 . CDS 217027 217254 . + 0 ID=Phyra95553;Parent=Phyra95553;rank=2 scaffold_44 . exon 217027 217254 . + . ID=Phyra95553.2;Parent=Phyra95553;constitutive=1;rank=2 scaffold_44 . CDS 217279 217561 . + 0 ID=Phyra95553;Parent=Phyra95553;rank=3 scaffold_44 . exon 217279 217561 . + . ID=Phyra95553.3;Parent=Phyra95553;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_44 . CDS 217642 217736 . + 0 ID=Phyra95553;Parent=Phyra95553;rank=4 scaffold_44 . CDS 217808 218380 . + 0 ID=Phyra95553;Parent=Phyra95553;rank=5 scaffold_44 ensembl protein_coding_gene 218476 219131 . - . ID=Phyra49028;biotype=protein_coding;external_name=gwEuk.44.7.1;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 218476 219131 . - . ID=Phyra49028;Parent=Phyra49028;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 218476 218546 . - 0 ID=Phyra49028;Parent=Phyra49028;rank=4 scaffold_44 . exon 218476 218546 . - . ID=Phyra49028.4;Parent=Phyra49028;constitutive=1;ensembl_phase=1;rank=4 scaffold_44 . CDS 218607 218676 . - 0 ID=Phyra49028;Parent=Phyra49028;rank=3 scaffold_44 . exon 218607 218676 . - . ID=Phyra49028.3;Parent=Phyra49028;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_44 . CDS 218744 218803 . - 0 ID=Phyra49028;Parent=Phyra49028;rank=2 scaffold_44 . exon 218744 218803 . - . ID=Phyra49028.2;Parent=Phyra49028;constitutive=1;rank=2 scaffold_44 . CDS 218901 219131 . - 0 ID=Phyra49028;Parent=Phyra49028;rank=1 scaffold_44 . exon 218901 219131 . - . ID=Phyra49028.1;Parent=Phyra49028;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 220237 220647 . - . ID=Phyra71749;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_44000005;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 220237 220647 . - . ID=Phyra71749;Parent=Phyra71749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 220237 220647 . - 0 ID=Phyra71749;Parent=Phyra71749;rank=1 scaffold_44 . exon 220237 220647 . - . ID=Phyra71749.1;Parent=Phyra71749;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 219282 219872 . + . ID=Phyra79932;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000077;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 219282 219872 . + . ID=Phyra79932;Parent=Phyra79932;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 219282 219408 . + 0 ID=Phyra79932;Parent=Phyra79932;rank=1 scaffold_44 . exon 219282 219408 . + . ID=Phyra79932.1;Parent=Phyra79932;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 219458 219543 . + 0 ID=Phyra79932;Parent=Phyra79932;rank=2 scaffold_44 . exon 219458 219543 . + . ID=Phyra79932.2;Parent=Phyra79932;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 219615 219718 . + 0 ID=Phyra79932;Parent=Phyra79932;rank=3 scaffold_44 . exon 219615 219718 . + . ID=Phyra79932.3;Parent=Phyra79932;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_44 . CDS 219788 219872 . + 0 ID=Phyra79932;Parent=Phyra79932;rank=4 scaffold_44 . exon 219788 219872 . + . ID=Phyra79932.4;Parent=Phyra79932;constitutive=1;ensembl_phase=2;rank=4 scaffold_44 ensembl protein_coding_gene 221629 223907 . + . ID=Phyra79934;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000079;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 221629 223907 . + . ID=Phyra79934;Parent=Phyra79934;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 221629 221650 . + 0 ID=Phyra79934;Parent=Phyra79934;rank=1 scaffold_44 . exon 221629 221650 . + . ID=Phyra79934.1;Parent=Phyra79934;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 221787 221862 . + 0 ID=Phyra79934;Parent=Phyra79934;rank=2 scaffold_44 . exon 221787 221862 . + . ID=Phyra79934.2;Parent=Phyra79934;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_44 . CDS 221998 222352 . + 0 ID=Phyra79934;Parent=Phyra79934;rank=3 scaffold_44 . exon 221998 222352 . + . ID=Phyra79934.3;Parent=Phyra79934;constitutive=1;ensembl_phase=2;rank=3 scaffold_44 . CDS 222422 222483 . + 0 ID=Phyra79934;Parent=Phyra79934;rank=4 scaffold_44 . exon 222422 222483 . + . ID=Phyra79934.4;Parent=Phyra79934;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_44 . CDS 222609 222663 . + 0 ID=Phyra79934;Parent=Phyra79934;rank=5 scaffold_44 . exon 222609 222663 . + . ID=Phyra79934.5;Parent=Phyra79934;constitutive=1;ensembl_phase=2;rank=5 scaffold_44 . CDS 222730 222861 . + 0 ID=Phyra79934;Parent=Phyra79934;rank=6 scaffold_44 . exon 222730 222861 . + . ID=Phyra79934.6;Parent=Phyra79934;constitutive=1;rank=6 scaffold_44 . CDS 222936 223907 . + 0 ID=Phyra79934;Parent=Phyra79934;rank=7 scaffold_44 . exon 222936 223907 . + . ID=Phyra79934.7;Parent=Phyra79934;constitutive=1;rank=7 scaffold_44 . exon 217642 217736 . + . ID=Phyra95553.4;Parent=Phyra95553;constitutive=1;ensembl_phase=1;rank=4 scaffold_44 . exon 217808 218380 . + . ID=Phyra95553.5;Parent=Phyra95553;constitutive=1;rank=5 scaffold_44 ensembl protein_coding_gene 225465 227864 . - . ID=Phyra95555;biotype=protein_coding;external_name=C_scaffold_44000013;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 225465 227864 . - . ID=Phyra95555;Parent=Phyra95555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 225465 225854 . - 0 ID=Phyra95555;Parent=Phyra95555;rank=9 scaffold_44 . exon 225465 225854 . - . ID=Phyra95555.9;Parent=Phyra95555;constitutive=1;rank=9 scaffold_44 . CDS 225996 226277 . - 0 ID=Phyra95555;Parent=Phyra95555;rank=8 scaffold_44 . exon 225996 226277 . - . ID=Phyra95555.8;Parent=Phyra95555;constitutive=1;rank=8 scaffold_44 . CDS 226344 226835 . - 0 ID=Phyra95555;Parent=Phyra95555;rank=7 scaffold_44 . exon 226344 226835 . - . ID=Phyra95555.7;Parent=Phyra95555;constitutive=1;rank=7 scaffold_44 . CDS 226860 226990 . - 0 ID=Phyra95555;Parent=Phyra95555;rank=6 scaffold_44 . exon 226860 226990 . - . ID=Phyra95555.6;Parent=Phyra95555;constitutive=1;ensembl_phase=1;rank=6 scaffold_44 . CDS 227084 227179 . - 0 ID=Phyra95555;Parent=Phyra95555;rank=5 scaffold_44 . exon 227084 227179 . - . ID=Phyra95555.5;Parent=Phyra95555;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_44 . CDS 227247 227311 . - 0 ID=Phyra95555;Parent=Phyra95555;rank=4 scaffold_44 . exon 227247 227311 . - . ID=Phyra95555.4;Parent=Phyra95555;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_44 . CDS 227387 227574 . - 0 ID=Phyra95555;Parent=Phyra95555;rank=3 scaffold_44 . exon 227387 227574 . - . ID=Phyra95555.3;Parent=Phyra95555;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_44 . CDS 227660 227728 . - 0 ID=Phyra95555;Parent=Phyra95555;rank=2 scaffold_44 . CDS 227802 227864 . - 0 ID=Phyra95555;Parent=Phyra95555;rank=1 scaffold_44 . repeat_region 228667 228688 . ? . description=trf scaffold_44 . repeat_region 230095 230329 . ? . description=trf scaffold_44 . repeat_region 230095 230351 . ? . description=trf scaffold_44 . repeat_region 230127 230348 . ? . description=trf scaffold_44 . repeat_region 230397 230530 . ? . description=trf scaffold_44 . repeat_region 232962 233009 . ? . description=trf scaffold_44 . repeat_region 233207 233215 . ? . description=dust scaffold_44 . repeat_region 233253 233268 . ? . description=dust scaffold_44 ensembl protein_coding_gene 231879 232535 . + . ID=Phyra49047;biotype=protein_coding;description=Cell 12A endoglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q30BY3];external_name=EGL12-G;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 231879 232535 . + . ID=Phyra49047;Parent=Phyra49047;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 231879 232535 . + 0 ID=Phyra49047;Parent=Phyra49047;rank=1 scaffold_44 . exon 231879 232535 . + . ID=Phyra49047.1;Parent=Phyra49047;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 229860 230576 . + . ID=Phyra79937;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000082;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 229860 230576 . + . ID=Phyra79937;Parent=Phyra79937;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 229860 230576 . + 0 ID=Phyra79937;Parent=Phyra79937;rank=1 scaffold_44 . exon 229860 230576 . + . ID=Phyra79937.1;Parent=Phyra79937;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 236713 238020 . + . ID=Phyra79939;biotype=protein_coding;description=Cell 12A endoglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q30BY2];external_name=EGL12-H;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 236713 238020 . + . ID=Phyra79939;Parent=Phyra79939;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 236713 238020 . + 0 ID=Phyra79939;Parent=Phyra79939;rank=1 scaffold_44 . exon 236713 238020 . + . ID=Phyra79939.1;Parent=Phyra79939;constitutive=1;rank=1 scaffold_44 . exon 227660 227728 . - . ID=Phyra95555.2;Parent=Phyra95555;constitutive=1;rank=2 scaffold_44 . exon 227802 227864 . - . ID=Phyra95555.1;Parent=Phyra95555;constitutive=1;rank=1 scaffold_44 . biological_region 239437 239439 0.999 - . logic_name=eponine scaffold_44 . biological_region 240143 240149 0.999 - . logic_name=eponine scaffold_44 . biological_region 240230 240236 0.999 + . logic_name=eponine scaffold_44 . biological_region 240272 240278 0.999 - . logic_name=eponine scaffold_44 . biological_region 240329 240334 0.999 + . logic_name=eponine scaffold_44 . biological_region 241676 241677 0.999 - . logic_name=eponine scaffold_44 . biological_region 245390 245392 0.999 + . logic_name=eponine scaffold_44 ensembl protein_coding_gene 243832 244737 . - . ID=Phyra49049;biotype=protein_coding;external_name=gwEuk.44.28.1;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 243832 244737 . - . ID=Phyra49049;Parent=Phyra49049;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 243832 244467 . - 0 ID=Phyra49049;Parent=Phyra49049;rank=2 scaffold_44 . exon 243832 244467 . - . ID=Phyra49049.2;Parent=Phyra49049;constitutive=1;rank=2 scaffold_44 . CDS 244516 244737 . - 0 ID=Phyra49049;Parent=Phyra49049;rank=1 scaffold_44 . exon 244516 244737 . - . ID=Phyra49049.1;Parent=Phyra49049;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 239499 241940 . + . ID=Phyra79940;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000085;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 239499 241940 . + . ID=Phyra79940;Parent=Phyra79940;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 239499 241940 . + 0 ID=Phyra79940;Parent=Phyra79940;rank=1 scaffold_44 . exon 239499 241940 . + . ID=Phyra79940.1;Parent=Phyra79940;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 244990 249767 . + . ID=Phyra79942;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000087;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 244990 249767 . + . ID=Phyra79942;Parent=Phyra79942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 244990 246420 . + 0 ID=Phyra79942;Parent=Phyra79942;rank=1 scaffold_44 . exon 244990 246420 . + . ID=Phyra79942.1;Parent=Phyra79942;constitutive=1;rank=1 scaffold_44 . CDS 246486 246646 . + 0 ID=Phyra79942;Parent=Phyra79942;rank=2 scaffold_44 . exon 246486 246646 . + . ID=Phyra79942.2;Parent=Phyra79942;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_44 . CDS 246716 249767 . + 0 ID=Phyra79942;Parent=Phyra79942;rank=3 scaffold_44 . exon 246716 249767 . + . ID=Phyra79942.3;Parent=Phyra79942;constitutive=1;ensembl_phase=2;rank=3 scaffold_44 . repeat_region 249592 249619 . ? . description=trf scaffold_44 . repeat_region 255629 255654 . ? . description=trf scaffold_44 ensembl protein_coding_gene 250059 251463 . - . ID=Phyra79943;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000088;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 250059 251463 . - . ID=Phyra79943;Parent=Phyra79943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 250059 250620 . - 0 ID=Phyra79943;Parent=Phyra79943;rank=4 scaffold_44 . exon 250059 250620 . - . ID=Phyra79943.4;Parent=Phyra79943;constitutive=1;ensembl_phase=2;rank=4 scaffold_44 . CDS 250701 250823 . - 0 ID=Phyra79943;Parent=Phyra79943;rank=3 scaffold_44 . exon 250701 250823 . - . ID=Phyra79943.3;Parent=Phyra79943;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_44 . CDS 250882 250928 . - 0 ID=Phyra79943;Parent=Phyra79943;rank=2 scaffold_44 . exon 250882 250928 . - . ID=Phyra79943.2;Parent=Phyra79943;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_44 . CDS 250987 251463 . - 0 ID=Phyra79943;Parent=Phyra79943;rank=1 scaffold_44 . exon 250987 251463 . - . ID=Phyra79943.1;Parent=Phyra79943;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 252593 253909 . - . ID=Phyra79944;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000089;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 252593 253909 . - . ID=Phyra79944;Parent=Phyra79944;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 252593 253407 . - 0 ID=Phyra79944;Parent=Phyra79944;rank=2 scaffold_44 . exon 252593 253407 . - . ID=Phyra79944.2;Parent=Phyra79944;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 253525 253909 . - 0 ID=Phyra79944;Parent=Phyra79944;rank=1 scaffold_44 . exon 253525 253909 . - . ID=Phyra79944.1;Parent=Phyra79944;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 256570 258646 . + . ID=Phyra79945;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000090;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 256570 258646 . + . ID=Phyra79945;Parent=Phyra79945;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 256570 258356 . + 0 ID=Phyra79945;Parent=Phyra79945;rank=1 scaffold_44 . exon 256570 258356 . + . ID=Phyra79945.1;Parent=Phyra79945;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 258622 258646 . + 0 ID=Phyra79945;Parent=Phyra79945;rank=2 scaffold_44 . biological_region 259219 259220 0.999 + . logic_name=eponine scaffold_44 . repeat_region 263893 263912 . ? . description=dust scaffold_44 . exon 258622 258646 . + . ID=Phyra79945.2;Parent=Phyra79945;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 ensembl protein_coding_gene 265628 267382 . + . ID=Phyra79948;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000093;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 265628 267382 . + . ID=Phyra79948;Parent=Phyra79948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 265628 267382 . + 0 ID=Phyra79948;Parent=Phyra79948;rank=1 scaffold_44 . exon 265628 267382 . + . ID=Phyra79948.1;Parent=Phyra79948;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 259021 261393 . - . ID=Phyra95562;biotype=protein_coding;external_name=C_scaffold_44000020;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 259021 261393 . - . ID=Phyra95562;Parent=Phyra95562;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 259021 259136 . - 0 ID=Phyra95562;Parent=Phyra95562;rank=12 scaffold_44 . exon 259021 259136 . - . ID=Phyra95562.12;Parent=Phyra95562;constitutive=1;ensembl_phase=1;rank=12 scaffold_44 . CDS 259228 259318 . - 0 ID=Phyra95562;Parent=Phyra95562;rank=11 scaffold_44 . exon 259228 259318 . - . ID=Phyra95562.11;Parent=Phyra95562;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_44 . CDS 259402 259626 . - 0 ID=Phyra95562;Parent=Phyra95562;rank=10 scaffold_44 . exon 259402 259626 . - . ID=Phyra95562.10;Parent=Phyra95562;constitutive=1;rank=10 scaffold_44 . CDS 259687 259742 . - 0 ID=Phyra95562;Parent=Phyra95562;rank=9 scaffold_44 . exon 259687 259742 . - . ID=Phyra95562.9;Parent=Phyra95562;constitutive=1;ensembl_phase=1;rank=9 scaffold_44 . CDS 259813 260031 . - 0 ID=Phyra95562;Parent=Phyra95562;rank=8 scaffold_44 . exon 259813 260031 . - . ID=Phyra95562.8;Parent=Phyra95562;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_44 . CDS 260099 260189 . - 0 ID=Phyra95562;Parent=Phyra95562;rank=7 scaffold_44 . exon 260099 260189 . - . ID=Phyra95562.7;Parent=Phyra95562;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_44 . CDS 260315 260403 . - 0 ID=Phyra95562;Parent=Phyra95562;rank=6 scaffold_44 . exon 260315 260403 . - . ID=Phyra95562.6;Parent=Phyra95562;constitutive=1;ensembl_phase=1;rank=6 scaffold_44 . CDS 260463 260553 . - 0 ID=Phyra95562;Parent=Phyra95562;rank=5 scaffold_44 . exon 260463 260553 . - . ID=Phyra95562.5;Parent=Phyra95562;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_44 . CDS 260629 260853 . - 0 ID=Phyra95562;Parent=Phyra95562;rank=4 scaffold_44 . exon 260629 260853 . - . ID=Phyra95562.4;Parent=Phyra95562;constitutive=1;rank=4 scaffold_44 . CDS 260918 260973 . - 0 ID=Phyra95562;Parent=Phyra95562;rank=3 scaffold_44 . exon 260918 260973 . - . ID=Phyra95562.3;Parent=Phyra95562;constitutive=1;ensembl_phase=1;rank=3 scaffold_44 . CDS 261048 261266 . - 0 ID=Phyra95562;Parent=Phyra95562;rank=2 scaffold_44 . exon 261048 261266 . - . ID=Phyra95562.2;Parent=Phyra95562;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 261330 261393 . - 0 ID=Phyra95562;Parent=Phyra95562;rank=1 scaffold_44 . exon 261330 261393 . - . ID=Phyra95562.1;Parent=Phyra95562;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 261828 262582 . + . ID=Phyra95565;biotype=protein_coding;external_name=C_scaffold_44000023;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 261828 262582 . + . ID=Phyra95565;Parent=Phyra95565;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 261828 262129 . + 0 ID=Phyra95565;Parent=Phyra95565;rank=1 scaffold_44 . exon 261828 262129 . + . ID=Phyra95565.1;Parent=Phyra95565;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 262198 262355 . + 0 ID=Phyra95565;Parent=Phyra95565;rank=2 scaffold_44 . exon 262198 262355 . + . ID=Phyra95565.2;Parent=Phyra95565;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 262440 262582 . + 0 ID=Phyra95565;Parent=Phyra95565;rank=3 scaffold_44 . exon 262440 262582 . + . ID=Phyra95565.3;Parent=Phyra95565;constitutive=1;ensembl_phase=1;rank=3 scaffold_44 . repeat_region 271167 271234 . ? . description=trf scaffold_44 . repeat_region 278288 278299 . ? . description=dust scaffold_44 . repeat_region 279893 279910 . ? . description=dust scaffold_44 . biological_region 283900 283904 0.999 + . logic_name=eponine scaffold_44 . biological_region 284120 284121 0.999 - . logic_name=eponine scaffold_44 . biological_region 284967 284972 0.999 + . logic_name=eponine scaffold_44 . biological_region 285253 285254 0.999 - . logic_name=eponine scaffold_44 . biological_region 285436 285439 0.999 - . logic_name=eponine scaffold_44 . biological_region 285451 285454 0.999 - . logic_name=eponine scaffold_44 . biological_region 285485 285491 0.999 - . logic_name=eponine scaffold_44 . biological_region 285492 285493 0.999 + . logic_name=eponine scaffold_44 . biological_region 285541 285544 0.999 + . logic_name=eponine scaffold_44 . biological_region 285679 285686 0.999 - . logic_name=eponine scaffold_44 ensembl protein_coding_gene 285084 285680 . + . ID=Phyra79949;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000094;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 285084 285680 . + . ID=Phyra79949;Parent=Phyra79949;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 285084 285680 . + 0 ID=Phyra79949;Parent=Phyra79949;rank=1 scaffold_44 . exon 285084 285680 . + . ID=Phyra79949.1;Parent=Phyra79949;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 286336 286956 . + . ID=Phyra79950;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000095;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 286336 286956 . + . ID=Phyra79950;Parent=Phyra79950;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 286336 286457 . + 0 ID=Phyra79950;Parent=Phyra79950;rank=1 scaffold_44 . exon 286336 286457 . + . ID=Phyra79950.1;Parent=Phyra79950;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 286523 286627 . + 0 ID=Phyra79950;Parent=Phyra79950;rank=2 scaffold_44 . exon 286523 286627 . + . ID=Phyra79950.2;Parent=Phyra79950;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_44 . CDS 286696 286756 . + 0 ID=Phyra79950;Parent=Phyra79950;rank=3 scaffold_44 . exon 286696 286756 . + . ID=Phyra79950.3;Parent=Phyra79950;constitutive=1;ensembl_phase=2;rank=3 scaffold_44 . CDS 286816 286956 . + 0 ID=Phyra79950;Parent=Phyra79950;rank=4 scaffold_44 . exon 286816 286956 . + . ID=Phyra79950.4;Parent=Phyra79950;constitutive=1;rank=4 scaffold_44 . repeat_region 289854 289909 . ? . description=trf scaffold_44 . repeat_region 294946 294990 . ? . description=trf scaffold_44 ensembl protein_coding_gene 291165 292053 . - . ID=Phyra49059;biotype=protein_coding;external_name=gwEuk.44.38.1;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 291165 292053 . - . ID=Phyra49059;Parent=Phyra49059;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 291165 291267 . - 0 ID=Phyra49059;Parent=Phyra49059;rank=7 scaffold_44 . exon 291165 291267 . - . ID=Phyra49059.7;Parent=Phyra49059;constitutive=1;ensembl_phase=2;rank=7 scaffold_44 . CDS 291338 291384 . - 0 ID=Phyra49059;Parent=Phyra49059;rank=6 scaffold_44 . exon 291338 291384 . - . ID=Phyra49059.6;Parent=Phyra49059;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_44 . CDS 291448 291498 . - 0 ID=Phyra49059;Parent=Phyra49059;rank=5 scaffold_44 . exon 291448 291498 . - . ID=Phyra49059.5;Parent=Phyra49059;constitutive=1;rank=5 scaffold_44 . CDS 291568 291633 . - 0 ID=Phyra49059;Parent=Phyra49059;rank=4 scaffold_44 . exon 291568 291633 . - . ID=Phyra49059.4;Parent=Phyra49059;constitutive=1;rank=4 scaffold_44 . CDS 291698 291824 . - 0 ID=Phyra49059;Parent=Phyra49059;rank=3 scaffold_44 . exon 291698 291824 . - . ID=Phyra49059.3;Parent=Phyra49059;constitutive=1;ensembl_phase=2;rank=3 scaffold_44 . CDS 291887 291911 . - 0 ID=Phyra49059;Parent=Phyra49059;rank=2 scaffold_44 . exon 291887 291911 . - . ID=Phyra49059.2;Parent=Phyra49059;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_44 . CDS 291978 292053 . - 0 ID=Phyra49059;Parent=Phyra49059;rank=1 scaffold_44 . exon 291978 292053 . - . ID=Phyra49059.1;Parent=Phyra49059;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 295011 296118 . + . ID=Phyra49061;biotype=protein_coding;external_name=gwEuk.44.40.1;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 295011 296118 . + . ID=Phyra49061;Parent=Phyra49061;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 295011 295063 . + 0 ID=Phyra49061;Parent=Phyra49061;rank=1 scaffold_44 . exon 295011 295063 . + . ID=Phyra49061.1;Parent=Phyra49061;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 295129 295204 . + 0 ID=Phyra49061;Parent=Phyra49061;rank=2 scaffold_44 . exon 295129 295204 . + . ID=Phyra49061.2;Parent=Phyra49061;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 295267 295833 . + 0 ID=Phyra49061;Parent=Phyra49061;rank=3 scaffold_44 . exon 295267 295833 . + . ID=Phyra49061.3;Parent=Phyra49061;constitutive=1;rank=3 scaffold_44 . CDS 295897 296118 . + 0 ID=Phyra49061;Parent=Phyra49061;rank=4 scaffold_44 . exon 295897 296118 . + . ID=Phyra49061.4;Parent=Phyra49061;constitutive=1;rank=4 scaffold_44 ensembl protein_coding_gene 287491 288534 . + . ID=Phyra71751;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_44000007;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 287491 288534 . + . ID=Phyra71751;Parent=Phyra71751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 287491 288468 . + 0 ID=Phyra71751;Parent=Phyra71751;rank=1 scaffold_44 . exon 287491 288468 . + . ID=Phyra71751.1;Parent=Phyra71751;constitutive=1;rank=1 scaffold_44 . CDS 288496 288534 . + 0 ID=Phyra71751;Parent=Phyra71751;rank=2 scaffold_44 . exon 288496 288534 . + . ID=Phyra71751.2;Parent=Phyra71751;constitutive=1;rank=2 scaffold_44 ensembl protein_coding_gene 289722 290975 . + . ID=Phyra79952;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000097;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 289722 290975 . + . ID=Phyra79952;Parent=Phyra79952;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 289722 290975 . + 0 ID=Phyra79952;Parent=Phyra79952;rank=1 scaffold_44 . exon 289722 290975 . + . ID=Phyra79952.1;Parent=Phyra79952;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 292576 294792 . - . ID=Phyra79954;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000099;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 292576 294792 . - . ID=Phyra79954;Parent=Phyra79954;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 292576 294792 . - 0 ID=Phyra79954;Parent=Phyra79954;rank=1 scaffold_44 . exon 292576 294792 . - . ID=Phyra79954.1;Parent=Phyra79954;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 296251 297153 . - . ID=Phyra79956;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000101;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 296251 297153 . - . ID=Phyra79956;Parent=Phyra79956;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 296251 297153 . - 0 ID=Phyra79956;Parent=Phyra79956;rank=1 scaffold_44 . exon 296251 297153 . - . ID=Phyra79956.1;Parent=Phyra79956;constitutive=1;rank=1 scaffold_44 . biological_region 298380 298385 0.999 + . logic_name=eponine scaffold_44 . biological_region 300348 300350 0.999 + . logic_name=eponine scaffold_44 . biological_region 300356 300359 0.999 + . logic_name=eponine scaffold_44 . biological_region 300402 300410 0.999 - . logic_name=eponine scaffold_44 . biological_region 300455 300456 0.999 - . logic_name=eponine scaffold_44 . biological_region 301022 301024 0.999 + . logic_name=eponine scaffold_44 . biological_region 301104 301108 0.999 + . logic_name=eponine scaffold_44 . biological_region 301194 301197 0.999 - . logic_name=eponine scaffold_44 . biological_region 304416 304419 0.999 - . logic_name=eponine scaffold_44 . biological_region 305064 305068 0.999 + . logic_name=eponine scaffold_44 . biological_region 305109 305116 0.999 + . logic_name=eponine scaffold_44 . biological_region 305137 305139 0.999 - . logic_name=eponine scaffold_44 . biological_region 305143 305147 0.999 + . logic_name=eponine scaffold_44 . biological_region 305405 305408 0.999 + . logic_name=eponine scaffold_44 ensembl protein_coding_gene 304102 304797 . - . ID=Phyra71753;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_44000009;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 304102 304797 . - . ID=Phyra71753;Parent=Phyra71753;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 304102 304797 . - 0 ID=Phyra71753;Parent=Phyra71753;rank=1 scaffold_44 . exon 304102 304797 . - . ID=Phyra71753.1;Parent=Phyra71753;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 297478 299979 . + . ID=Phyra79957;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000102;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 297478 299979 . + . ID=Phyra79957;Parent=Phyra79957;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 297478 299979 . + 0 ID=Phyra79957;Parent=Phyra79957;rank=1 scaffold_44 . exon 297478 299979 . + . ID=Phyra79957.1;Parent=Phyra79957;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 300562 301376 . - . ID=Phyra79958;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000103;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 300562 301376 . - . ID=Phyra79958;Parent=Phyra79958;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 300562 300612 . - 0 ID=Phyra79958;Parent=Phyra79958;rank=2 scaffold_44 . exon 300562 300612 . - . ID=Phyra79958.2;Parent=Phyra79958;constitutive=1;rank=2 scaffold_44 . CDS 300633 301376 . - 0 ID=Phyra79958;Parent=Phyra79958;rank=1 scaffold_44 . exon 300633 301376 . - . ID=Phyra79958.1;Parent=Phyra79958;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 301662 303386 . - . ID=Phyra79959;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000104;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 301662 303386 . - . ID=Phyra79959;Parent=Phyra79959;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 301662 303386 . - 0 ID=Phyra79959;Parent=Phyra79959;rank=1 scaffold_44 . exon 301662 303386 . - . ID=Phyra79959.1;Parent=Phyra79959;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 304991 305952 . + . ID=Phyra79961;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000106;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 304991 305952 . + . ID=Phyra79961;Parent=Phyra79961;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 304991 305282 . + 0 ID=Phyra79961;Parent=Phyra79961;rank=1 scaffold_44 . exon 304991 305282 . + . ID=Phyra79961.1;Parent=Phyra79961;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 305339 305952 . + 0 ID=Phyra79961;Parent=Phyra79961;rank=2 scaffold_44 . exon 305339 305952 . + . ID=Phyra79961.2;Parent=Phyra79961;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . repeat_region 311893 311953 . ? . description=trf scaffold_44 . repeat_region 316362 316391 . ? . description=trf scaffold_44 ensembl protein_coding_gene 308212 308992 . - . ID=Phyra79962;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000107;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 308212 308992 . - . ID=Phyra79962;Parent=Phyra79962;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 308212 308230 . - 0 ID=Phyra79962;Parent=Phyra79962;rank=5 scaffold_44 . exon 308212 308230 . - . ID=Phyra79962.5;Parent=Phyra79962;constitutive=1;ensembl_phase=2;rank=5 scaffold_44 . CDS 308265 308284 . - 0 ID=Phyra79962;Parent=Phyra79962;rank=4 scaffold_44 . exon 308265 308284 . - . ID=Phyra79962.4;Parent=Phyra79962;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_44 . CDS 308325 308543 . - 0 ID=Phyra79962;Parent=Phyra79962;rank=3 scaffold_44 . exon 308325 308543 . - . ID=Phyra79962.3;Parent=Phyra79962;constitutive=1;rank=3 scaffold_44 . CDS 308623 308708 . - 0 ID=Phyra79962;Parent=Phyra79962;rank=2 scaffold_44 . exon 308623 308708 . - . ID=Phyra79962.2;Parent=Phyra79962;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 308815 308992 . - 0 ID=Phyra79962;Parent=Phyra79962;rank=1 scaffold_44 . exon 308815 308992 . - . ID=Phyra79962.1;Parent=Phyra79962;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 309173 312178 . + . ID=Phyra79963;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000108;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 309173 312178 . + . ID=Phyra79963;Parent=Phyra79963;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 309173 312178 . + 0 ID=Phyra79963;Parent=Phyra79963;rank=1 scaffold_44 . exon 309173 312178 . + . ID=Phyra79963.1;Parent=Phyra79963;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 312428 313363 . + . ID=Phyra79964;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000109;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 312428 313363 . + . ID=Phyra79964;Parent=Phyra79964;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 312428 313363 . + 0 ID=Phyra79964;Parent=Phyra79964;rank=1 scaffold_44 . exon 312428 313363 . + . ID=Phyra79964.1;Parent=Phyra79964;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 313432 316154 . - . ID=Phyra95567;biotype=protein_coding;external_name=C_scaffold_44000025;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 313432 316154 . - . ID=Phyra95567;Parent=Phyra95567;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 313432 313590 . - 0 ID=Phyra95567;Parent=Phyra95567;rank=8 scaffold_44 . exon 313432 313590 . - . ID=Phyra95567.8;Parent=Phyra95567;constitutive=1;rank=8 scaffold_44 . CDS 313766 313822 . - 0 ID=Phyra95567;Parent=Phyra95567;rank=7 scaffold_44 . exon 313766 313822 . - . ID=Phyra95567.7;Parent=Phyra95567;constitutive=1;rank=7 scaffold_44 . CDS 313865 313945 . - 0 ID=Phyra95567;Parent=Phyra95567;rank=6 scaffold_44 . exon 313865 313945 . - . ID=Phyra95567.6;Parent=Phyra95567;constitutive=1;rank=6 scaffold_44 . CDS 314024 314116 . - 0 ID=Phyra95567;Parent=Phyra95567;rank=5 scaffold_44 . exon 314024 314116 . - . ID=Phyra95567.5;Parent=Phyra95567;constitutive=1;rank=5 scaffold_44 . CDS 314164 314231 . - 0 ID=Phyra95567;Parent=Phyra95567;rank=4 scaffold_44 . exon 314164 314231 . - . ID=Phyra95567.4;Parent=Phyra95567;constitutive=1;ensembl_phase=1;rank=4 scaffold_44 . CDS 314349 314581 . - 0 ID=Phyra95567;Parent=Phyra95567;rank=3 scaffold_44 . exon 314349 314581 . - . ID=Phyra95567.3;Parent=Phyra95567;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_44 . CDS 314803 315593 . - 0 ID=Phyra95567;Parent=Phyra95567;rank=2 scaffold_44 . exon 314803 315593 . - . ID=Phyra95567.2;Parent=Phyra95567;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_44 . CDS 315654 316154 . - 0 ID=Phyra95567;Parent=Phyra95567;rank=1 scaffold_44 . exon 315654 316154 . - . ID=Phyra95567.1;Parent=Phyra95567;constitutive=1;rank=1 scaffold_44 . biological_region 317345 317351 0.999 + . logic_name=eponine scaffold_44 . biological_region 317951 317952 0.999 + . logic_name=eponine scaffold_44 . repeat_region 326285 326293 . ? . description=dust scaffold_44 ensembl protein_coding_gene 316846 317586 . - . ID=Phyra95568;biotype=protein_coding;external_name=C_scaffold_44000026;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 316846 317586 . - . ID=Phyra95568;Parent=Phyra95568;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 316846 317586 . - 0 ID=Phyra95568;Parent=Phyra95568;rank=1 scaffold_44 . exon 316846 317586 . - . ID=Phyra95568.1;Parent=Phyra95568;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 317931 322573 . + . ID=Phyra95569;biotype=protein_coding;external_name=C_scaffold_44000027;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 317931 322573 . + . ID=Phyra95569;Parent=Phyra95569;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 317931 318178 . + 0 ID=Phyra95569;Parent=Phyra95569;rank=1 scaffold_44 . exon 317931 318178 . + . ID=Phyra95569.1;Parent=Phyra95569;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 318249 318374 . + 0 ID=Phyra95569;Parent=Phyra95569;rank=2 scaffold_44 . exon 318249 318374 . + . ID=Phyra95569.2;Parent=Phyra95569;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_44 . CDS 318442 318541 . + 0 ID=Phyra95569;Parent=Phyra95569;rank=3 scaffold_44 . exon 318442 318541 . + . ID=Phyra95569.3;Parent=Phyra95569;constitutive=1;ensembl_phase=2;rank=3 scaffold_44 . CDS 318614 318789 . + 0 ID=Phyra95569;Parent=Phyra95569;rank=4 scaffold_44 . exon 318614 318789 . + . ID=Phyra95569.4;Parent=Phyra95569;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_44 . CDS 318985 319216 . + 0 ID=Phyra95569;Parent=Phyra95569;rank=5 scaffold_44 . exon 318985 319216 . + . ID=Phyra95569.5;Parent=Phyra95569;constitutive=1;ensembl_phase=2;rank=5 scaffold_44 . CDS 319283 319627 . + 0 ID=Phyra95569;Parent=Phyra95569;rank=6 scaffold_44 . exon 319283 319627 . + . ID=Phyra95569.6;Parent=Phyra95569;constitutive=1;rank=6 scaffold_44 . CDS 319652 319914 . + 0 ID=Phyra95569;Parent=Phyra95569;rank=7 scaffold_44 . exon 319652 319914 . + . ID=Phyra95569.7;Parent=Phyra95569;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_44 . CDS 319982 320094 . + 0 ID=Phyra95569;Parent=Phyra95569;rank=8 scaffold_44 . exon 319982 320094 . + . ID=Phyra95569.8;Parent=Phyra95569;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_44 . CDS 320237 320417 . + 0 ID=Phyra95569;Parent=Phyra95569;rank=9 scaffold_44 . exon 320237 320417 . + . ID=Phyra95569.9;Parent=Phyra95569;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_44 . CDS 320485 320674 . + 0 ID=Phyra95569;Parent=Phyra95569;rank=10 scaffold_44 . exon 320485 320674 . + . ID=Phyra95569.10;Parent=Phyra95569;constitutive=1;ensembl_phase=2;rank=10 scaffold_44 . CDS 320746 320918 . + 0 ID=Phyra95569;Parent=Phyra95569;rank=11 scaffold_44 . exon 320746 320918 . + . ID=Phyra95569.11;Parent=Phyra95569;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_44 . CDS 320987 321141 . + 0 ID=Phyra95569;Parent=Phyra95569;rank=12 scaffold_44 . exon 320987 321141 . + . ID=Phyra95569.12;Parent=Phyra95569;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_44 . CDS 321743 322573 . + 0 ID=Phyra95569;Parent=Phyra95569;rank=13 scaffold_44 . exon 321743 322573 . + . ID=Phyra95569.13;Parent=Phyra95569;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_44 . repeat_region 331771 331802 . ? . description=trf scaffold_44 ensembl protein_coding_gene 327166 330832 . + . ID=Phyra79970;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000115;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 327166 330832 . + . ID=Phyra79970;Parent=Phyra79970;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 327166 328821 . + 0 ID=Phyra79970;Parent=Phyra79970;rank=1 scaffold_44 . exon 327166 328821 . + . ID=Phyra79970.1;Parent=Phyra79970;constitutive=1;rank=1 scaffold_44 . CDS 329028 329055 . + 0 ID=Phyra79970;Parent=Phyra79970;rank=2 scaffold_44 . exon 329028 329055 . + . ID=Phyra79970.2;Parent=Phyra79970;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_44 . CDS 329136 330832 . + 0 ID=Phyra79970;Parent=Phyra79970;rank=3 scaffold_44 . exon 329136 330832 . + . ID=Phyra79970.3;Parent=Phyra79970;constitutive=1;ensembl_phase=1;rank=3 scaffold_44 ensembl protein_coding_gene 330967 332329 . + . ID=Phyra79971;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000116;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 330967 332329 . + . ID=Phyra79971;Parent=Phyra79971;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 330967 331659 . + 0 ID=Phyra79971;Parent=Phyra79971;rank=1 scaffold_44 . exon 330967 331659 . + . ID=Phyra79971.1;Parent=Phyra79971;constitutive=1;rank=1 scaffold_44 . CDS 331760 332329 . + 0 ID=Phyra79971;Parent=Phyra79971;rank=2 scaffold_44 . exon 331760 332329 . + . ID=Phyra79971.2;Parent=Phyra79971;constitutive=1;rank=2 scaffold_44 ensembl protein_coding_gene 334438 336216 . + . ID=Phyra79972;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000117;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 334438 336216 . + . ID=Phyra79972;Parent=Phyra79972;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 334438 336216 . + 0 ID=Phyra79972;Parent=Phyra79972;rank=1 scaffold_44 . exon 334438 336216 . + . ID=Phyra79972.1;Parent=Phyra79972;constitutive=1;rank=1 scaffold_44 . biological_region 340043 340047 0.999 - . logic_name=eponine scaffold_44 . biological_region 340363 340365 0.999 + . logic_name=eponine scaffold_44 . biological_region 340418 340421 0.999 - . logic_name=eponine scaffold_44 . biological_region 341204 341207 0.999 + . logic_name=eponine scaffold_44 . biological_region 341332 341334 0.999 - . logic_name=eponine scaffold_44 . biological_region 341835 341837 0.999 - . logic_name=eponine scaffold_44 . biological_region 343053 343055 0.999 + . logic_name=eponine scaffold_44 . biological_region 343409 343411 0.999 + . logic_name=eponine scaffold_44 . biological_region 344352 344353 0.999 + . logic_name=eponine scaffold_44 ensembl protein_coding_gene 337111 338846 . + . ID=Phyra79973;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000118;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 337111 338846 . + . ID=Phyra79973;Parent=Phyra79973;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 337111 338808 . + 0 ID=Phyra79973;Parent=Phyra79973;rank=1 scaffold_44 . exon 337111 338808 . + . ID=Phyra79973.1;Parent=Phyra79973;constitutive=1;rank=1 scaffold_44 . CDS 338841 338846 . + 0 ID=Phyra79973;Parent=Phyra79973;rank=2 scaffold_44 . exon 338841 338846 . + . ID=Phyra79973.2;Parent=Phyra79973;constitutive=1;rank=2 scaffold_44 ensembl protein_coding_gene 338942 340621 . - . ID=Phyra79974;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000119;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 338942 340621 . - . ID=Phyra79974;Parent=Phyra79974;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 338942 340621 . - 0 ID=Phyra79974;Parent=Phyra79974;rank=1 scaffold_44 . exon 338942 340621 . - . ID=Phyra79974.1;Parent=Phyra79974;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 342777 344426 . - . ID=Phyra79975;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000120;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 342777 344426 . - . ID=Phyra79975;Parent=Phyra79975;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 342777 344426 . - 0 ID=Phyra79975;Parent=Phyra79975;rank=1 scaffold_44 . exon 342777 344426 . - . ID=Phyra79975.1;Parent=Phyra79975;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 344581 347770 . - . ID=Phyra79976;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000121;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 344581 347770 . - . ID=Phyra79976;Parent=Phyra79976;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 344581 345969 . - 0 ID=Phyra79976;Parent=Phyra79976;rank=3 scaffold_44 . exon 344581 345969 . - . ID=Phyra79976.3;Parent=Phyra79976;constitutive=1;rank=3 scaffold_44 . CDS 346005 346045 . - 0 ID=Phyra79976;Parent=Phyra79976;rank=2 scaffold_44 . exon 346005 346045 . - . ID=Phyra79976.2;Parent=Phyra79976;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 346186 347770 . - 0 ID=Phyra79976;Parent=Phyra79976;rank=1 scaffold_44 . exon 346186 347770 . - . ID=Phyra79976.1;Parent=Phyra79976;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . repeat_region 347472 347515 . ? . description=trf scaffold_44 ensembl protein_coding_gene 354823 355854 . + . ID=Phyra49081;biotype=protein_coding;external_name=gwEuk.44.60.1;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 354823 355854 . + . ID=Phyra49081;Parent=Phyra49081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 354823 355854 . + 0 ID=Phyra49081;Parent=Phyra49081;rank=1 scaffold_44 . exon 354823 355854 . + . ID=Phyra49081.1;Parent=Phyra49081;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 347934 348980 . - . ID=Phyra79977;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000122;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 347934 348980 . - . ID=Phyra79977;Parent=Phyra79977;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 347934 348980 . - 0 ID=Phyra79977;Parent=Phyra79977;rank=1 scaffold_44 . exon 347934 348980 . - . ID=Phyra79977.1;Parent=Phyra79977;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 349166 353058 . - . ID=Phyra95573;biotype=protein_coding;external_name=C_scaffold_44000031;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 349166 353058 . - . ID=Phyra95573;Parent=Phyra95573;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 349166 349639 . - 0 ID=Phyra95573;Parent=Phyra95573;rank=10 scaffold_44 . exon 349166 349639 . - . ID=Phyra95573.10;Parent=Phyra95573;constitutive=1;rank=10 scaffold_44 . CDS 349682 349904 . - 0 ID=Phyra95573;Parent=Phyra95573;rank=9 scaffold_44 . exon 349682 349904 . - . ID=Phyra95573.9;Parent=Phyra95573;constitutive=1;ensembl_phase=2;rank=9 scaffold_44 . CDS 349956 350862 . - 0 ID=Phyra95573;Parent=Phyra95573;rank=8 scaffold_44 . exon 349956 350862 . - . ID=Phyra95573.8;Parent=Phyra95573;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_44 . CDS 350950 351101 . - 0 ID=Phyra95573;Parent=Phyra95573;rank=7 scaffold_44 . exon 350950 351101 . - . ID=Phyra95573.7;Parent=Phyra95573;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_44 . CDS 351153 351211 . - 0 ID=Phyra95573;Parent=Phyra95573;rank=6 scaffold_44 . exon 351153 351211 . - . ID=Phyra95573.6;Parent=Phyra95573;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_44 . CDS 351371 351492 . - 0 ID=Phyra95573;Parent=Phyra95573;rank=5 scaffold_44 . exon 351371 351492 . - . ID=Phyra95573.5;Parent=Phyra95573;constitutive=1;ensembl_phase=1;rank=5 scaffold_44 . CDS 351544 351750 . - 0 ID=Phyra95573;Parent=Phyra95573;rank=4 scaffold_44 . exon 351544 351750 . - . ID=Phyra95573.4;Parent=Phyra95573;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_44 . CDS 351979 352188 . - 0 ID=Phyra95573;Parent=Phyra95573;rank=3 scaffold_44 . exon 351979 352188 . - . ID=Phyra95573.3;Parent=Phyra95573;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_44 . CDS 352213 352866 . - 0 ID=Phyra95573;Parent=Phyra95573;rank=2 scaffold_44 . exon 352213 352866 . - . ID=Phyra95573.2;Parent=Phyra95573;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 352938 353058 . - 0 ID=Phyra95573;Parent=Phyra95573;rank=1 scaffold_44 . exon 352938 353058 . - . ID=Phyra95573.1;Parent=Phyra95573;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . biological_region 356892 356894 0.999 + . logic_name=eponine scaffold_44 . biological_region 361937 361937 0.999 - . logic_name=eponine scaffold_44 . biological_region 361958 361962 0.999 - . logic_name=eponine scaffold_44 . biological_region 365445 365448 0.999 - . logic_name=eponine scaffold_44 . biological_region 365522 365525 0.999 - . logic_name=eponine scaffold_44 ensembl protein_coding_gene 356621 358180 . + . ID=Phyra79980;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000125;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 356621 358180 . + . ID=Phyra79980;Parent=Phyra79980;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 356621 358180 . + 0 ID=Phyra79980;Parent=Phyra79980;rank=1 scaffold_44 . exon 356621 358180 . + . ID=Phyra79980.1;Parent=Phyra79980;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 358647 361670 . + . ID=Phyra79981;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000126;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 358647 361670 . + . ID=Phyra79981;Parent=Phyra79981;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 358647 359531 . + 0 ID=Phyra79981;Parent=Phyra79981;rank=1 scaffold_44 . exon 358647 359531 . + . ID=Phyra79981.1;Parent=Phyra79981;constitutive=1;rank=1 scaffold_44 . CDS 359604 361670 . + 0 ID=Phyra79981;Parent=Phyra79981;rank=2 scaffold_44 . exon 359604 361670 . + . ID=Phyra79981.2;Parent=Phyra79981;constitutive=1;rank=2 scaffold_44 ensembl protein_coding_gene 361770 364373 . - . ID=Phyra79982;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000127;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 361770 364373 . - . ID=Phyra79982;Parent=Phyra79982;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 361770 364373 . - 0 ID=Phyra79982;Parent=Phyra79982;rank=1 scaffold_44 . exon 361770 364373 . - . ID=Phyra79982.1;Parent=Phyra79982;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 364594 365581 . - . ID=Phyra79983;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000128;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 364594 365581 . - . ID=Phyra79983;Parent=Phyra79983;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 364594 365138 . - 0 ID=Phyra79983;Parent=Phyra79983;rank=2 scaffold_44 . exon 364594 365138 . - . ID=Phyra79983.2;Parent=Phyra79983;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 365209 365581 . - 0 ID=Phyra79983;Parent=Phyra79983;rank=1 scaffold_44 . exon 365209 365581 . - . ID=Phyra79983.1;Parent=Phyra79983;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 365835 366938 . - . ID=Phyra79984;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000129;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 365835 366938 . - . ID=Phyra79984;Parent=Phyra79984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 365835 366938 . - 0 ID=Phyra79984;Parent=Phyra79984;rank=1 scaffold_44 . exon 365835 366938 . - . ID=Phyra79984.1;Parent=Phyra79984;constitutive=1;rank=1 scaffold_44 . repeat_region 371522 371531 . ? . description=dust scaffold_44 . repeat_region 375383 375403 . ? . description=trf scaffold_44 ensembl protein_coding_gene 370242 371312 . - . ID=Phyra49090;biotype=protein_coding;external_name=gwEuk.44.69.1;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 370242 371312 . - . ID=Phyra49090;Parent=Phyra49090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 370242 371312 . - 0 ID=Phyra49090;Parent=Phyra49090;rank=1 scaffold_44 . exon 370242 371312 . - . ID=Phyra49090.1;Parent=Phyra49090;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 371863 373462 . + . ID=Phyra71755;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_44000011;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 371863 373462 . + . ID=Phyra71755;Parent=Phyra71755;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 371863 371907 . + 0 ID=Phyra71755;Parent=Phyra71755;rank=1 scaffold_44 . exon 371863 371907 . + . ID=Phyra71755.1;Parent=Phyra71755;constitutive=1;rank=1 scaffold_44 . CDS 372008 373462 . + 0 ID=Phyra71755;Parent=Phyra71755;rank=2 scaffold_44 . exon 372008 373462 . + . ID=Phyra71755.2;Parent=Phyra71755;constitutive=1;rank=2 scaffold_44 ensembl protein_coding_gene 367315 370059 . + . ID=Phyra79985;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000130;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 367315 370059 . + . ID=Phyra79985;Parent=Phyra79985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 367315 370059 . + 0 ID=Phyra79985;Parent=Phyra79985;rank=1 scaffold_44 . exon 367315 370059 . + . ID=Phyra79985.1;Parent=Phyra79985;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 373843 375078 . - . ID=Phyra79988;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000133;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 373843 375078 . - . ID=Phyra79988;Parent=Phyra79988;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 373843 375078 . - 0 ID=Phyra79988;Parent=Phyra79988;rank=1 scaffold_44 . exon 373843 375078 . - . ID=Phyra79988.1;Parent=Phyra79988;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 375521 378233 . - . ID=Phyra79989;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000134;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 375521 378233 . - . ID=Phyra79989;Parent=Phyra79989;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 375521 377558 . - 0 ID=Phyra79989;Parent=Phyra79989;rank=2 scaffold_44 . exon 375521 377558 . - . ID=Phyra79989.2;Parent=Phyra79989;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 377629 378233 . - 0 ID=Phyra79989;Parent=Phyra79989;rank=1 scaffold_44 . biological_region 376259 376262 0.999 + . logic_name=eponine scaffold_44 . biological_region 376283 376285 0.999 + . logic_name=eponine scaffold_44 . biological_region 377019 377023 0.999 - . logic_name=eponine scaffold_44 . biological_region 377887 377888 0.999 + . logic_name=eponine scaffold_44 . biological_region 377906 377906 0.999 + . logic_name=eponine scaffold_44 . biological_region 377923 377927 0.999 - . logic_name=eponine scaffold_44 . biological_region 377940 377946 0.999 + . logic_name=eponine scaffold_44 . biological_region 378017 378025 0.999 - . logic_name=eponine scaffold_44 . biological_region 379434 379437 0.999 - . logic_name=eponine scaffold_44 . biological_region 379882 379889 0.999 - . logic_name=eponine scaffold_44 . biological_region 382113 382116 0.999 - . logic_name=eponine scaffold_44 . biological_region 382674 382679 0.999 - . logic_name=eponine scaffold_44 ensembl protein_coding_gene 381969 382481 . - . ID=Phyra49107;biotype=protein_coding;external_name=gwEuk.44.86.1;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 381969 382481 . - . ID=Phyra49107;Parent=Phyra49107;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 381969 382481 . - 0 ID=Phyra49107;Parent=Phyra49107;rank=1 scaffold_44 . exon 381969 382481 . - . ID=Phyra49107.1;Parent=Phyra49107;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 379687 381300 . + . ID=Phyra71756;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_44000012;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 379687 381300 . + . ID=Phyra71756;Parent=Phyra71756;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 379687 381300 . + 0 ID=Phyra71756;Parent=Phyra71756;rank=1 scaffold_44 . exon 379687 381300 . + . ID=Phyra71756.1;Parent=Phyra71756;constitutive=1;rank=1 scaffold_44 . exon 377629 378233 . - . ID=Phyra79989.1;Parent=Phyra79989;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 ensembl protein_coding_gene 382837 384272 . + . ID=Phyra79992;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000137;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 382837 384272 . + . ID=Phyra79992;Parent=Phyra79992;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 382837 383082 . + 0 ID=Phyra79992;Parent=Phyra79992;rank=1 scaffold_44 . exon 382837 383082 . + . ID=Phyra79992.1;Parent=Phyra79992;constitutive=1;rank=1 scaffold_44 . CDS 383153 383284 . + 0 ID=Phyra79992;Parent=Phyra79992;rank=2 scaffold_44 . exon 383153 383284 . + . ID=Phyra79992.2;Parent=Phyra79992;constitutive=1;rank=2 scaffold_44 . CDS 383359 383403 . + 0 ID=Phyra79992;Parent=Phyra79992;rank=3 scaffold_44 . exon 383359 383403 . + . ID=Phyra79992.3;Parent=Phyra79992;constitutive=1;rank=3 scaffold_44 . CDS 383689 383725 . + 0 ID=Phyra79992;Parent=Phyra79992;rank=4 scaffold_44 . exon 383689 383725 . + . ID=Phyra79992.4;Parent=Phyra79992;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_44 . CDS 383920 384272 . + 0 ID=Phyra79992;Parent=Phyra79992;rank=5 scaffold_44 . exon 383920 384272 . + . ID=Phyra79992.5;Parent=Phyra79992;constitutive=1;ensembl_phase=1;rank=5 scaffold_44 ensembl protein_coding_gene 384706 385664 . + . ID=Phyra79993;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000138;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 384706 385664 . + . ID=Phyra79993;Parent=Phyra79993;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 384706 385036 . + 0 ID=Phyra79993;Parent=Phyra79993;rank=1 scaffold_44 . exon 384706 385036 . + . ID=Phyra79993.1;Parent=Phyra79993;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 385120 385664 . + 0 ID=Phyra79993;Parent=Phyra79993;rank=2 scaffold_44 . exon 385120 385664 . + . ID=Phyra79993.2;Parent=Phyra79993;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . repeat_region 388963 389054 . ? . description=trf scaffold_44 . repeat_region 389283 389410 . ? . description=trf scaffold_44 . repeat_region 390047 390085 . ? . description=dust scaffold_44 ensembl protein_coding_gene 391211 392581 . + . ID=Phyra49113;biotype=protein_coding;external_name=gwEuk.44.92.1;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 391211 392581 . + . ID=Phyra49113;Parent=Phyra49113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 391211 392105 . + 0 ID=Phyra49113;Parent=Phyra49113;rank=1 scaffold_44 . exon 391211 392105 . + . ID=Phyra49113.1;Parent=Phyra49113;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 392166 392581 . + 0 ID=Phyra49113;Parent=Phyra49113;rank=2 scaffold_44 . exon 392166 392581 . + . ID=Phyra49113.2;Parent=Phyra49113;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 ensembl protein_coding_gene 386342 388319 . + . ID=Phyra79994;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000139;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 386342 388319 . + . ID=Phyra79994;Parent=Phyra79994;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 386342 386610 . + 0 ID=Phyra79994;Parent=Phyra79994;rank=1 scaffold_44 . exon 386342 386610 . + . ID=Phyra79994.1;Parent=Phyra79994;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 386699 386883 . + 0 ID=Phyra79994;Parent=Phyra79994;rank=2 scaffold_44 . exon 386699 386883 . + . ID=Phyra79994.2;Parent=Phyra79994;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 386995 388319 . + 0 ID=Phyra79994;Parent=Phyra79994;rank=3 scaffold_44 . exon 386995 388319 . + . ID=Phyra79994.3;Parent=Phyra79994;constitutive=1;ensembl_phase=1;rank=3 scaffold_44 ensembl protein_coding_gene 388704 390098 . + . ID=Phyra79995;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000140;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 388704 390098 . + . ID=Phyra79995;Parent=Phyra79995;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 388704 390098 . + 0 ID=Phyra79995;Parent=Phyra79995;rank=1 scaffold_44 . exon 388704 390098 . + . ID=Phyra79995.1;Parent=Phyra79995;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 390275 390792 . - . ID=Phyra79996;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000141;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 390275 390792 . - . ID=Phyra79996;Parent=Phyra79996;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 390275 390479 . - 0 ID=Phyra79996;Parent=Phyra79996;rank=3 scaffold_44 . exon 390275 390479 . - . ID=Phyra79996.3;Parent=Phyra79996;constitutive=1;ensembl_phase=2;rank=3 scaffold_44 . CDS 390541 390682 . - 0 ID=Phyra79996;Parent=Phyra79996;rank=2 scaffold_44 . exon 390541 390682 . - . ID=Phyra79996.2;Parent=Phyra79996;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_44 . CDS 390747 390792 . - 0 ID=Phyra79996;Parent=Phyra79996;rank=1 scaffold_44 . exon 390747 390792 . - . ID=Phyra79996.1;Parent=Phyra79996;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 392944 398942 . + . ID=Phyra95574;biotype=protein_coding;external_name=C_scaffold_44000032;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 392944 398942 . + . ID=Phyra95574;Parent=Phyra95574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . exon 392944 393167 . + . ID=Phyra95574.1;Parent=Phyra95574;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_44 . CDS 392945 393167 . + 0 ID=Phyra95574;Parent=Phyra95574;rank=1 scaffold_44 . CDS 393687 394022 . + 0 ID=Phyra95574;Parent=Phyra95574;rank=2 scaffold_44 . exon 393687 394022 . + . ID=Phyra95574.2;Parent=Phyra95574;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 394077 394649 . + 0 ID=Phyra95574;Parent=Phyra95574;rank=3 scaffold_44 . exon 394077 394649 . + . ID=Phyra95574.3;Parent=Phyra95574;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_44 . CDS 394716 394816 . + 0 ID=Phyra95574;Parent=Phyra95574;rank=4 scaffold_44 . exon 394716 394816 . + . ID=Phyra95574.4;Parent=Phyra95574;constitutive=1;ensembl_phase=1;rank=4 scaffold_44 . CDS 394886 395094 . + 0 ID=Phyra95574;Parent=Phyra95574;rank=5 scaffold_44 . exon 394886 395094 . + . ID=Phyra95574.5;Parent=Phyra95574;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_44 . CDS 395406 395526 . + 0 ID=Phyra95574;Parent=Phyra95574;rank=6 scaffold_44 . exon 395406 395526 . + . ID=Phyra95574.6;Parent=Phyra95574;constitutive=1;ensembl_phase=2;rank=6 scaffold_44 . CDS 395596 395698 . + 0 ID=Phyra95574;Parent=Phyra95574;rank=7 scaffold_44 . exon 395596 395698 . + . ID=Phyra95574.7;Parent=Phyra95574;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_44 . CDS 395764 398942 . + 0 ID=Phyra95574;Parent=Phyra95574;rank=8 scaffold_44 . biological_region 399936 399938 0.999 - . logic_name=eponine scaffold_44 ensembl pseudogene 400034 401313 . + . ID=Phyra49122;biotype=pseudogene;external_name=gwEuk.44.101.1;logic_name=jgi_phyra1 scaffold_44 ensembl pseudogene 400034 401313 . + . ID=Phyra49122;Parent=Phyra49122;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_44 . exon 400034 401313 . + . ID=Phyra49122.1;Parent=Phyra49122;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 ensembl protein_coding_gene 405455 406558 . + . ID=Phyra71758;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_44000014;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 405455 406558 . + . ID=Phyra71758;Parent=Phyra71758;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 405455 405736 . + 0 ID=Phyra71758;Parent=Phyra71758;rank=1 scaffold_44 . exon 405455 405736 . + . ID=Phyra71758.1;Parent=Phyra71758;constitutive=1;rank=1 scaffold_44 . CDS 405810 406433 . + 0 ID=Phyra71758;Parent=Phyra71758;rank=2 scaffold_44 . CDS 406502 406558 . + 0 ID=Phyra71758;Parent=Phyra71758;rank=3 scaffold_44 . exon 395764 398942 . + . ID=Phyra95574.8;Parent=Phyra95574;constitutive=1;ensembl_phase=1;rank=8 scaffold_44 ensembl protein_coding_gene 401928 404900 . - . ID=Phyra95577;biotype=protein_coding;external_name=C_scaffold_44000035;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 401928 404900 . - . ID=Phyra95577;Parent=Phyra95577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 401928 402193 . - 0 ID=Phyra95577;Parent=Phyra95577;rank=9 scaffold_44 . exon 401928 402193 . - . ID=Phyra95577.9;Parent=Phyra95577;constitutive=1;ensembl_phase=1;rank=9 scaffold_44 . CDS 402278 402728 . - 0 ID=Phyra95577;Parent=Phyra95577;rank=8 scaffold_44 . exon 402278 402728 . - . ID=Phyra95577.8;Parent=Phyra95577;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_44 . CDS 402786 402905 . - 0 ID=Phyra95577;Parent=Phyra95577;rank=7 scaffold_44 . exon 402786 402905 . - . ID=Phyra95577.7;Parent=Phyra95577;constitutive=1;rank=7 scaffold_44 . CDS 402963 403079 . - 0 ID=Phyra95577;Parent=Phyra95577;rank=6 scaffold_44 . exon 402963 403079 . - . ID=Phyra95577.6;Parent=Phyra95577;constitutive=1;rank=6 scaffold_44 . CDS 403269 403545 . - 0 ID=Phyra95577;Parent=Phyra95577;rank=5 scaffold_44 . exon 403269 403545 . - . ID=Phyra95577.5;Parent=Phyra95577;constitutive=1;ensembl_phase=2;rank=5 scaffold_44 . CDS 403723 403767 . - 0 ID=Phyra95577;Parent=Phyra95577;rank=4 scaffold_44 . exon 403723 403767 . - . ID=Phyra95577.4;Parent=Phyra95577;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_44 . CDS 404098 404419 . - 0 ID=Phyra95577;Parent=Phyra95577;rank=3 scaffold_44 . exon 404098 404419 . - . ID=Phyra95577.3;Parent=Phyra95577;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_44 . CDS 404477 404697 . - 0 ID=Phyra95577;Parent=Phyra95577;rank=2 scaffold_44 . exon 404477 404697 . - . ID=Phyra95577.2;Parent=Phyra95577;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 404728 404900 . - 0 ID=Phyra95577;Parent=Phyra95577;rank=1 scaffold_44 . exon 404728 404900 . - . ID=Phyra95577.1;Parent=Phyra95577;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . repeat_region 410165 410178 . ? . description=dust scaffold_44 . repeat_region 413133 413211 . ? . description=dust scaffold_44 . repeat_region 413134 413209 . ? . description=trf scaffold_44 . repeat_region 413139 413209 . ? . description=trf scaffold_44 . repeat_region 414401 414458 . ? . description=dust scaffold_44 . repeat_region 414407 414451 . ? . description=trf scaffold_44 . repeat_region 414407 414456 . ? . description=trf scaffold_44 ensembl tRNA_gene 414541 414622 . + . ID=EPrPRAG00000000131;biotype=tRNA;description=tRNA-Leu for anticodon AAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_44 ensembl transcript 414541 414622 . + . ID=EPrPRAT00000000131;Parent=EPrPRAG00000000131;biotype=tRNA;logic_name=ncrna_eg scaffold_44 ensembl tRNA_gene 413294 413375 . + . ID=EPrPRAG00000000170;biotype=tRNA;description=tRNA-Leu for anticodon AAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_44 ensembl transcript 413294 413375 . + . ID=EPrPRAT00000000170;Parent=EPrPRAG00000000170;biotype=tRNA;logic_name=ncrna_eg scaffold_44 . exon 414541 414622 . + . ID=EPrPRAE00000000131;Parent=EPrPRAT00000000131;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . exon 413294 413375 . + . ID=EPrPRAE00000000170;Parent=EPrPRAT00000000170;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . exon 405810 406433 . + . ID=Phyra71758.2;Parent=Phyra71758;constitutive=1;rank=2 scaffold_44 . exon 406502 406558 . + . ID=Phyra71758.3;Parent=Phyra71758;constitutive=1;rank=3 scaffold_44 ensembl protein_coding_gene 407085 409354 . - . ID=Phyra80001;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_44000146;logic_name=jgi_phyra1 scaffold_44 ensembl transcript 407085 409354 . - . ID=Phyra80001;Parent=Phyra80001;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_44 . CDS 407085 407540 . - 0 ID=Phyra80001;Parent=Phyra80001;rank=4 scaffold_44 . exon 407085 407540 . - . ID=Phyra80001.4;Parent=Phyra80001;constitutive=1;rank=4 scaffold_44 . CDS 407609 408417 . - 0 ID=Phyra80001;Parent=Phyra80001;rank=3 scaffold_44 . exon 407609 408417 . - . ID=Phyra80001.3;Parent=Phyra80001;constitutive=1;ensembl_phase=1;rank=3 scaffold_44 . CDS 408523 408873 . - 0 ID=Phyra80001;Parent=Phyra80001;rank=2 scaffold_44 . exon 408523 408873 . - . ID=Phyra80001.2;Parent=Phyra80001;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 408934 409354 . - 0 ID=Phyra80001;Parent=Phyra80001;rank=1 scaffold_44 . exon 408934 409354 . - . ID=Phyra80001.1;Parent=Phyra80001;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_43 1 418711 scaffold_43 . repeat_region 1571 2153 . ? . description=dust scaffold_43 . biological_region 2679 2680 0.999 + . logic_name=eponine scaffold_43 . biological_region 2688 2695 0.999 - . logic_name=eponine scaffold_43 . repeat_region 4159 4173 . ? . description=dust scaffold_43 . biological_region 7667 7667 0.999 + . logic_name=eponine scaffold_43 . biological_region 8137 8142 0.999 - . logic_name=eponine scaffold_43 . biological_region 8823 8824 0.999 - . logic_name=eponine scaffold_43 . repeat_region 9688 11145 . ? . description=dust scaffold_43 ensembl protein_coding_gene 835 3205 . - . ID=Phyra79720;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000001;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 835 3205 . - . ID=Phyra79720;Parent=Phyra79720;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 835 1524 . - 0 ID=Phyra79720;Parent=Phyra79720;rank=2 scaffold_43 . exon 835 1524 . - . ID=Phyra79720.2;Parent=Phyra79720;constitutive=1;rank=2 scaffold_43 . CDS 2174 3205 . - 0 ID=Phyra79720;Parent=Phyra79720;rank=1 scaffold_43 . exon 2174 3205 . - . ID=Phyra79720.1;Parent=Phyra79720;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 5002 7079 . - . ID=Phyra95462;biotype=protein_coding;external_name=C_scaffold_43000001;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 5002 7079 . - . ID=Phyra95462;Parent=Phyra95462;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 5002 5150 . - 0 ID=Phyra95462;Parent=Phyra95462;rank=5 scaffold_43 . exon 5002 5150 . - . ID=Phyra95462.5;Parent=Phyra95462;constitutive=1;ensembl_phase=1;rank=5 scaffold_43 . CDS 5730 6021 . - 0 ID=Phyra95462;Parent=Phyra95462;rank=4 scaffold_43 . exon 5730 6021 . - . ID=Phyra95462.4;Parent=Phyra95462;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_43 . CDS 6117 6209 . - 0 ID=Phyra95462;Parent=Phyra95462;rank=3 scaffold_43 . exon 6117 6209 . - . ID=Phyra95462.3;Parent=Phyra95462;constitutive=1;rank=3 scaffold_43 . CDS 6291 6750 . - 0 ID=Phyra95462;Parent=Phyra95462;rank=2 scaffold_43 . exon 6291 6750 . - . ID=Phyra95462.2;Parent=Phyra95462;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 6772 7079 . - 0 ID=Phyra95462;Parent=Phyra95462;rank=1 scaffold_43 . exon 6772 7079 . - . ID=Phyra95462.1;Parent=Phyra95462;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 7531 8706 . - . ID=Phyra95463;biotype=protein_coding;external_name=C_scaffold_43000002;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 7531 8706 . - . ID=Phyra95463;Parent=Phyra95463;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 7531 8706 . - 0 ID=Phyra95463;Parent=Phyra95463;rank=1 scaffold_43 . exon 7531 8706 . - . ID=Phyra95463.1;Parent=Phyra95463;constitutive=1;rank=1 scaffold_43 . repeat_region 15421 15475 . ? . description=trf scaffold_43 . repeat_region 16809 16851 . ? . description=trf scaffold_43 . repeat_region 17004 17032 . ? . description=trf scaffold_43 ensembl protein_coding_gene 14292 15490 . - . ID=Phyra79725;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000006;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 14292 15490 . - . ID=Phyra79725;Parent=Phyra79725;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 14292 14583 . - 0 ID=Phyra79725;Parent=Phyra79725;rank=2 scaffold_43 . exon 14292 14583 . - . ID=Phyra79725.2;Parent=Phyra79725;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 14679 15490 . - 0 ID=Phyra79725;Parent=Phyra79725;rank=1 scaffold_43 . exon 14679 15490 . - . ID=Phyra79725.1;Parent=Phyra79725;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 16467 17126 . + . ID=Phyra79726;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000007;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 16467 17126 . + . ID=Phyra79726;Parent=Phyra79726;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 16467 16532 . + 0 ID=Phyra79726;Parent=Phyra79726;rank=1 scaffold_43 . exon 16467 16532 . + . ID=Phyra79726.1;Parent=Phyra79726;constitutive=1;rank=1 scaffold_43 . CDS 16635 17126 . + 0 ID=Phyra79726;Parent=Phyra79726;rank=2 scaffold_43 . exon 16635 17126 . + . ID=Phyra79726.2;Parent=Phyra79726;constitutive=1;rank=2 scaffold_43 ensembl protein_coding_gene 19704 20660 . - . ID=Phyra79728;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000009;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 19704 20660 . - . ID=Phyra79728;Parent=Phyra79728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 19704 20660 . - 0 ID=Phyra79728;Parent=Phyra79728;rank=1 scaffold_43 . exon 19704 20660 . - . ID=Phyra79728.1;Parent=Phyra79728;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 11545 12146 . - . ID=Phyra95464;biotype=protein_coding;external_name=C_scaffold_43000003;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 11545 12146 . - . ID=Phyra95464;Parent=Phyra95464;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 11545 11877 . - 0 ID=Phyra95464;Parent=Phyra95464;rank=2 scaffold_43 . exon 11545 11877 . - . ID=Phyra95464.2;Parent=Phyra95464;constitutive=1;rank=2 scaffold_43 . CDS 11943 12146 . - 0 ID=Phyra95464;Parent=Phyra95464;rank=1 scaffold_43 . exon 11943 12146 . - . ID=Phyra95464.1;Parent=Phyra95464;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 12865 13698 . + . ID=Phyra95467;biotype=protein_coding;external_name=C_scaffold_43000006;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 12865 13698 . + . ID=Phyra95467;Parent=Phyra95467;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 12865 12915 . + 0 ID=Phyra95467;Parent=Phyra95467;rank=1 scaffold_43 . exon 12865 12915 . + . ID=Phyra95467.1;Parent=Phyra95467;constitutive=1;rank=1 scaffold_43 . CDS 12985 13096 . + 0 ID=Phyra95467;Parent=Phyra95467;rank=2 scaffold_43 . exon 12985 13096 . + . ID=Phyra95467.2;Parent=Phyra95467;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_43 . CDS 13176 13267 . + 0 ID=Phyra95467;Parent=Phyra95467;rank=3 scaffold_43 . exon 13176 13267 . + . ID=Phyra95467.3;Parent=Phyra95467;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 13334 13441 . + 0 ID=Phyra95467;Parent=Phyra95467;rank=4 scaffold_43 . exon 13334 13441 . + . ID=Phyra95467.4;Parent=Phyra95467;constitutive=1;rank=4 scaffold_43 . CDS 13522 13698 . + 0 ID=Phyra95467;Parent=Phyra95467;rank=5 scaffold_43 . exon 13522 13698 . + . ID=Phyra95467.5;Parent=Phyra95467;constitutive=1;rank=5 scaffold_43 ensembl protein_coding_gene 17715 19548 . - . ID=Phyra95469;biotype=protein_coding;external_name=C_scaffold_43000008;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 17715 19548 . - . ID=Phyra95469;Parent=Phyra95469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 17715 17747 . - 0 ID=Phyra95469;Parent=Phyra95469;rank=7 scaffold_43 . exon 17715 17747 . - . ID=Phyra95469.7;Parent=Phyra95469;constitutive=1;rank=7 scaffold_43 . CDS 17807 18155 . - 0 ID=Phyra95469;Parent=Phyra95469;rank=6 scaffold_43 . exon 17807 18155 . - . ID=Phyra95469.6;Parent=Phyra95469;constitutive=1;ensembl_phase=2;rank=6 scaffold_43 . CDS 18220 18351 . - 0 ID=Phyra95469;Parent=Phyra95469;rank=5 scaffold_43 . exon 18220 18351 . - . ID=Phyra95469.5;Parent=Phyra95469;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_43 . CDS 18433 18554 . - 0 ID=Phyra95469;Parent=Phyra95469;rank=4 scaffold_43 . exon 18433 18554 . - . ID=Phyra95469.4;Parent=Phyra95469;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_43 . CDS 18628 18717 . - 0 ID=Phyra95469;Parent=Phyra95469;rank=3 scaffold_43 . exon 18628 18717 . - . ID=Phyra95469.3;Parent=Phyra95469;constitutive=1;rank=3 scaffold_43 . CDS 18786 19221 . - 0 ID=Phyra95469;Parent=Phyra95469;rank=2 scaffold_43 . exon 18786 19221 . - . ID=Phyra95469.2;Parent=Phyra95469;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 19289 19548 . - 0 ID=Phyra95469;Parent=Phyra95469;rank=1 scaffold_43 . exon 19289 19548 . - . ID=Phyra95469.1;Parent=Phyra95469;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . repeat_region 28436 28447 . ? . description=dust scaffold_43 . biological_region 28967 28972 0.999 - . logic_name=eponine scaffold_43 ensembl protein_coding_gene 28702 30231 . + . ID=Phyra71726;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_43000001;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 28702 30231 . + . ID=Phyra71726;Parent=Phyra71726;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 28702 30231 . + 0 ID=Phyra71726;Parent=Phyra71726;rank=1 scaffold_43 . exon 28702 30231 . + . ID=Phyra71726.1;Parent=Phyra71726;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 21140 21509 . + . ID=Phyra79729;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000010;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 21140 21509 . + . ID=Phyra79729;Parent=Phyra79729;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 21140 21269 . + 0 ID=Phyra79729;Parent=Phyra79729;rank=1 scaffold_43 . exon 21140 21269 . + . ID=Phyra79729.1;Parent=Phyra79729;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 21337 21509 . + 0 ID=Phyra79729;Parent=Phyra79729;rank=2 scaffold_43 . exon 21337 21509 . + . ID=Phyra79729.2;Parent=Phyra79729;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 ensembl protein_coding_gene 26371 27762 . - . ID=Phyra79732;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000013;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 26371 27762 . - . ID=Phyra79732;Parent=Phyra79732;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 26371 27762 . - 0 ID=Phyra79732;Parent=Phyra79732;rank=1 scaffold_43 . exon 26371 27762 . - . ID=Phyra79732.1;Parent=Phyra79732;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 21877 24494 . - . ID=Phyra95474;biotype=protein_coding;external_name=C_scaffold_43000013;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 21877 24494 . - . ID=Phyra95474;Parent=Phyra95474;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 21877 22978 . - 0 ID=Phyra95474;Parent=Phyra95474;rank=3 scaffold_43 . exon 21877 22978 . - . ID=Phyra95474.3;Parent=Phyra95474;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 23383 24206 . - 0 ID=Phyra95474;Parent=Phyra95474;rank=2 scaffold_43 . exon 23383 24206 . - . ID=Phyra95474.2;Parent=Phyra95474;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_43 . CDS 24231 24494 . - 0 ID=Phyra95474;Parent=Phyra95474;rank=1 scaffold_43 . exon 24231 24494 . - . ID=Phyra95474.1;Parent=Phyra95474;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 30547 33907 . + . ID=Phyra79734;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000015;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 30547 33907 . + . ID=Phyra79734;Parent=Phyra79734;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 30547 30617 . + 0 ID=Phyra79734;Parent=Phyra79734;rank=1 scaffold_43 . exon 30547 30617 . + . ID=Phyra79734.1;Parent=Phyra79734;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 30739 30752 . + 0 ID=Phyra79734;Parent=Phyra79734;rank=2 scaffold_43 . exon 30739 30752 . + . ID=Phyra79734.2;Parent=Phyra79734;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 31037 31093 . + 0 ID=Phyra79734;Parent=Phyra79734;rank=3 scaffold_43 . exon 31037 31093 . + . ID=Phyra79734.3;Parent=Phyra79734;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 31256 31662 . + 0 ID=Phyra79734;Parent=Phyra79734;rank=4 scaffold_43 . exon 31256 31662 . + . ID=Phyra79734.4;Parent=Phyra79734;constitutive=1;ensembl_phase=1;rank=4 scaffold_43 . CDS 31739 32114 . + 0 ID=Phyra79734;Parent=Phyra79734;rank=5 scaffold_43 . exon 31739 32114 . + . ID=Phyra79734.5;Parent=Phyra79734;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_43 . CDS 32335 32570 . + 0 ID=Phyra79734;Parent=Phyra79734;rank=6 scaffold_43 . exon 32335 32570 . + . ID=Phyra79734.6;Parent=Phyra79734;constitutive=1;ensembl_phase=1;rank=6 scaffold_43 . CDS 32673 32767 . + 0 ID=Phyra79734;Parent=Phyra79734;rank=7 scaffold_43 . exon 32673 32767 . + . ID=Phyra79734.7;Parent=Phyra79734;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_43 . CDS 32862 33434 . + 0 ID=Phyra79734;Parent=Phyra79734;rank=8 scaffold_43 . exon 32862 33434 . + . ID=Phyra79734.8;Parent=Phyra79734;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_43 . CDS 33775 33907 . + 0 ID=Phyra79734;Parent=Phyra79734;rank=9 scaffold_43 . exon 33775 33907 . + . ID=Phyra79734.9;Parent=Phyra79734;constitutive=1;ensembl_phase=2;rank=9 scaffold_43 ensembl protein_coding_gene 34712 37469 . - . ID=Phyra79735;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000016;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 34712 37469 . - . ID=Phyra79735;Parent=Phyra79735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 34712 34744 . - 0 ID=Phyra79735;Parent=Phyra79735;rank=3 scaffold_43 . exon 34712 34744 . - . ID=Phyra79735.3;Parent=Phyra79735;constitutive=1;rank=3 scaffold_43 . CDS 34790 35639 . - 0 ID=Phyra79735;Parent=Phyra79735;rank=2 scaffold_43 . exon 34790 35639 . - . ID=Phyra79735.2;Parent=Phyra79735;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 35761 37469 . - 0 ID=Phyra79735;Parent=Phyra79735;rank=1 scaffold_43 . exon 35761 37469 . - . ID=Phyra79735.1;Parent=Phyra79735;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 38549 40145 . + . ID=Phyra79736;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000017;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 38549 40145 . + . ID=Phyra79736;Parent=Phyra79736;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 38549 39413 . + 0 ID=Phyra79736;Parent=Phyra79736;rank=1 scaffold_43 . exon 38549 39413 . + . ID=Phyra79736.1;Parent=Phyra79736;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 39634 40145 . + 0 ID=Phyra79736;Parent=Phyra79736;rank=2 scaffold_43 . exon 39634 40145 . + . ID=Phyra79736.2;Parent=Phyra79736;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . biological_region 41307 41311 0.999 - . logic_name=eponine scaffold_43 . biological_region 41436 41438 0.999 - . logic_name=eponine scaffold_43 . repeat_region 44988 45028 . - . description=Polinton-1_PI scaffold_43 . biological_region 46451 46452 0.999 - . logic_name=eponine scaffold_43 . biological_region 46478 46480 0.999 - . logic_name=eponine scaffold_43 . biological_region 47206 47210 0.999 + . logic_name=eponine scaffold_43 . biological_region 49030 49032 0.999 - . logic_name=eponine scaffold_43 . biological_region 49675 49678 0.999 - . logic_name=eponine scaffold_43 ensembl protein_coding_gene 46954 48213 . + . ID=Phyra48933;biotype=protein_coding;external_name=gwEuk.43.79.1;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 46954 48213 . + . ID=Phyra48933;Parent=Phyra48933;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 46954 48213 . + 0 ID=Phyra48933;Parent=Phyra48933;rank=1 scaffold_43 . exon 46954 48213 . + . ID=Phyra48933.1;Parent=Phyra48933;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 48461 49243 . - . ID=Phyra71728;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_43000003;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 48461 49243 . - . ID=Phyra71728;Parent=Phyra71728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 48461 49243 . - 0 ID=Phyra71728;Parent=Phyra71728;rank=1 scaffold_43 . exon 48461 49243 . - . ID=Phyra71728.1;Parent=Phyra71728;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 40279 41988 . - . ID=Phyra79737;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000018;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 40279 41988 . - . ID=Phyra79737;Parent=Phyra79737;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 40279 41988 . - 0 ID=Phyra79737;Parent=Phyra79737;rank=1 scaffold_43 . exon 40279 41988 . - . ID=Phyra79737.1;Parent=Phyra79737;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 42558 44267 . + . ID=Phyra79738;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000019;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 42558 44267 . + . ID=Phyra79738;Parent=Phyra79738;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 42558 44267 . + 0 ID=Phyra79738;Parent=Phyra79738;rank=1 scaffold_43 . exon 42558 44267 . + . ID=Phyra79738.1;Parent=Phyra79738;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 45351 46610 . + . ID=Phyra79739;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000020;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 45351 46610 . + . ID=Phyra79739;Parent=Phyra79739;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 45351 46610 . + 0 ID=Phyra79739;Parent=Phyra79739;rank=1 scaffold_43 . exon 45351 46610 . + . ID=Phyra79739.1;Parent=Phyra79739;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 49549 51139 . + . ID=Phyra79742;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000023;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 49549 51139 . + . ID=Phyra79742;Parent=Phyra79742;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 49549 49931 . + 0 ID=Phyra79742;Parent=Phyra79742;rank=1 scaffold_43 . exon 49549 49931 . + . ID=Phyra79742.1;Parent=Phyra79742;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 50005 50974 . + 0 ID=Phyra79742;Parent=Phyra79742;rank=2 scaffold_43 . CDS 51059 51139 . + 0 ID=Phyra79742;Parent=Phyra79742;rank=3 scaffold_43 . repeat_region 54298 54358 . ? . description=trf scaffold_43 ensembl protein_coding_gene 52740 53315 . + . ID=Phyra71729;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_43000004;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 52740 53315 . + . ID=Phyra71729;Parent=Phyra71729;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 52740 53116 . + 0 ID=Phyra71729;Parent=Phyra71729;rank=1 scaffold_43 . exon 52740 53116 . + . ID=Phyra71729.1;Parent=Phyra71729;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 53201 53315 . + 0 ID=Phyra71729;Parent=Phyra71729;rank=2 scaffold_43 . exon 53201 53315 . + . ID=Phyra71729.2;Parent=Phyra71729;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . exon 50005 50974 . + . ID=Phyra79742.2;Parent=Phyra79742;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . exon 51059 51139 . + . ID=Phyra79742.3;Parent=Phyra79742;constitutive=1;rank=3 scaffold_43 ensembl protein_coding_gene 54832 58264 . + . ID=Phyra95477;biotype=protein_coding;external_name=C_scaffold_43000016;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 54832 58264 . + . ID=Phyra95477;Parent=Phyra95477;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . exon 54832 54959 . + . ID=Phyra95477.1;Parent=Phyra95477;constitutive=1;ensembl_phase=-1;rank=1 scaffold_43 . CDS 54834 54959 . + 0 ID=Phyra95477;Parent=Phyra95477;rank=1 scaffold_43 . CDS 55024 55673 . + 0 ID=Phyra95477;Parent=Phyra95477;rank=2 scaffold_43 . exon 55024 55673 . + . ID=Phyra95477.2;Parent=Phyra95477;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_43 . CDS 56111 56697 . + 0 ID=Phyra95477;Parent=Phyra95477;rank=3 scaffold_43 . exon 56111 56697 . + . ID=Phyra95477.3;Parent=Phyra95477;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 56866 57590 . + 0 ID=Phyra95477;Parent=Phyra95477;rank=4 scaffold_43 . exon 56866 57590 . + . ID=Phyra95477.4;Parent=Phyra95477;constitutive=1;ensembl_phase=1;rank=4 scaffold_43 . CDS 57668 58264 . + 0 ID=Phyra95477;Parent=Phyra95477;rank=5 scaffold_43 . exon 57668 58264 . + . ID=Phyra95477.5;Parent=Phyra95477;constitutive=1;rank=5 scaffold_43 . biological_region 60459 60463 0.999 + . logic_name=eponine scaffold_43 . biological_region 62086 62090 0.999 - . logic_name=eponine scaffold_43 . biological_region 62117 62120 0.999 + . logic_name=eponine scaffold_43 . biological_region 62136 62141 0.999 - . logic_name=eponine scaffold_43 . repeat_region 63265 63415 . - . description=GypsyPi-1c_LTR scaffold_43 . repeat_region 67177 67226 . ? . description=dust scaffold_43 . repeat_region 68266 68315 . ? . description=dust scaffold_43 . biological_region 68774 68776 0.999 + . logic_name=eponine scaffold_43 . repeat_region 69389 70162 . ? . description=dust scaffold_43 ensembl protein_coding_gene 60184 62181 . - . ID=Phyra79746;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000027;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 60184 62181 . - . ID=Phyra79746;Parent=Phyra79746;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 60184 62181 . - 0 ID=Phyra79746;Parent=Phyra79746;rank=1 scaffold_43 . exon 60184 62181 . - . ID=Phyra79746.1;Parent=Phyra79746;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 67283 69293 . - . ID=Phyra79747;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000028;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 67283 69293 . - . ID=Phyra79747;Parent=Phyra79747;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 67283 67579 . - 0 ID=Phyra79747;Parent=Phyra79747;rank=3 scaffold_43 . exon 67283 67579 . - . ID=Phyra79747.3;Parent=Phyra79747;constitutive=1;rank=3 scaffold_43 . CDS 67880 67904 . - 0 ID=Phyra79747;Parent=Phyra79747;rank=2 scaffold_43 . exon 67880 67904 . - . ID=Phyra79747.2;Parent=Phyra79747;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 68347 69293 . - 0 ID=Phyra79747;Parent=Phyra79747;rank=1 scaffold_43 . exon 68347 69293 . - . ID=Phyra79747.1;Parent=Phyra79747;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . repeat_region 70281 70322 . ? . description=trf scaffold_43 . repeat_region 71970 71993 . ? . description=trf scaffold_43 . repeat_region 72430 72842 . + . description=GypsyPi-1c_I-int scaffold_43 . repeat_region 73295 73666 . + . description=GypsyPi-1c_I-int scaffold_43 . repeat_region 74145 77095 . + . description=GypsyPi-1c_I-int scaffold_43 ensembl protein_coding_gene 70593 71129 . - . ID=Phyra79748;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000029;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 70593 71129 . - . ID=Phyra79748;Parent=Phyra79748;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 70593 70889 . - 0 ID=Phyra79748;Parent=Phyra79748;rank=2 scaffold_43 . exon 70593 70889 . - . ID=Phyra79748.2;Parent=Phyra79748;constitutive=1;rank=2 scaffold_43 . CDS 71037 71129 . - 0 ID=Phyra79748;Parent=Phyra79748;rank=1 scaffold_43 . exon 71037 71129 . - . ID=Phyra79748.1;Parent=Phyra79748;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 73575 77412 . + . ID=Phyra79749;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000030;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 73575 77412 . + . ID=Phyra79749;Parent=Phyra79749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 73575 73817 . + 0 ID=Phyra79749;Parent=Phyra79749;rank=1 scaffold_43 . exon 73575 73817 . + . ID=Phyra79749.1;Parent=Phyra79749;constitutive=1;rank=1 scaffold_43 . CDS 73920 74047 . + 0 ID=Phyra79749;Parent=Phyra79749;rank=2 scaffold_43 . exon 73920 74047 . + . ID=Phyra79749.2;Parent=Phyra79749;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_43 . CDS 74077 74758 . + 0 ID=Phyra79749;Parent=Phyra79749;rank=3 scaffold_43 . exon 74077 74758 . + . ID=Phyra79749.3;Parent=Phyra79749;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 74860 75018 . + 0 ID=Phyra79749;Parent=Phyra79749;rank=4 scaffold_43 . exon 74860 75018 . + . ID=Phyra79749.4;Parent=Phyra79749;constitutive=1;rank=4 scaffold_43 . CDS 75392 75395 . + 0 ID=Phyra79749;Parent=Phyra79749;rank=5 scaffold_43 . exon 75392 75395 . + . ID=Phyra79749.5;Parent=Phyra79749;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_43 . CDS 75424 76409 . + 0 ID=Phyra79749;Parent=Phyra79749;rank=6 scaffold_43 . exon 75424 76409 . + . ID=Phyra79749.6;Parent=Phyra79749;constitutive=1;ensembl_phase=1;rank=6 scaffold_43 . CDS 76508 76662 . + 0 ID=Phyra79749;Parent=Phyra79749;rank=7 scaffold_43 . exon 76508 76662 . + . ID=Phyra79749.7;Parent=Phyra79749;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_43 . CDS 76797 76881 . + 0 ID=Phyra79749;Parent=Phyra79749;rank=8 scaffold_43 . exon 76797 76881 . + . ID=Phyra79749.8;Parent=Phyra79749;constitutive=1;ensembl_phase=2;rank=8 scaffold_43 . CDS 76918 77412 . + 0 ID=Phyra79749;Parent=Phyra79749;rank=9 scaffold_43 . exon 76918 77412 . + . ID=Phyra79749.9;Parent=Phyra79749;constitutive=1;rank=9 scaffold_43 . repeat_region 86593 86732 . + . description=GypsyPi-1c_LTR scaffold_43 . biological_region 87857 87862 0.999 + . logic_name=eponine scaffold_43 . biological_region 87878 87881 0.999 - . logic_name=eponine scaffold_43 . biological_region 87908 87912 0.999 + . logic_name=eponine scaffold_43 . biological_region 89535 89539 0.999 - . logic_name=eponine scaffold_43 ensembl protein_coding_gene 80940 81615 . - . ID=Phyra79750;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000031;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 80940 81615 . - . ID=Phyra79750;Parent=Phyra79750;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 80940 81343 . - 0 ID=Phyra79750;Parent=Phyra79750;rank=3 scaffold_43 . exon 80940 81343 . - . ID=Phyra79750.3;Parent=Phyra79750;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 81423 81489 . - 0 ID=Phyra79750;Parent=Phyra79750;rank=2 scaffold_43 . exon 81423 81489 . - . ID=Phyra79750.2;Parent=Phyra79750;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_43 . CDS 81526 81615 . - 0 ID=Phyra79750;Parent=Phyra79750;rank=1 scaffold_43 . exon 81526 81615 . - . ID=Phyra79750.1;Parent=Phyra79750;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 87816 89813 . + . ID=Phyra79751;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000032;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 87816 89813 . + . ID=Phyra79751;Parent=Phyra79751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 87816 89813 . + 0 ID=Phyra79751;Parent=Phyra79751;rank=1 scaffold_43 . exon 87816 89813 . + . ID=Phyra79751.1;Parent=Phyra79751;constitutive=1;rank=1 scaffold_43 . repeat_region 92763 92782 . ? . description=trf scaffold_43 . repeat_region 92763 92782 . ? . description=dust scaffold_43 . repeat_region 96633 96643 . ? . description=dust scaffold_43 . repeat_region 96991 97000 . ? . description=dust scaffold_43 . repeat_region 97358 97400 . ? . description=trf scaffold_43 ensembl protein_coding_gene 93242 96337 . - . ID=Phyra79752;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000033;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 93242 96337 . - . ID=Phyra79752;Parent=Phyra79752;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 93242 96337 . - 0 ID=Phyra79752;Parent=Phyra79752;rank=1 scaffold_43 . exon 93242 96337 . - . ID=Phyra79752.1;Parent=Phyra79752;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 97529 100500 . + . ID=Phyra79753;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000034;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 97529 100500 . + . ID=Phyra79753;Parent=Phyra79753;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 97529 100327 . + 0 ID=Phyra79753;Parent=Phyra79753;rank=1 scaffold_43 . exon 97529 100327 . + . ID=Phyra79753.1;Parent=Phyra79753;constitutive=1;rank=1 scaffold_43 . CDS 100399 100500 . + 0 ID=Phyra79753;Parent=Phyra79753;rank=2 scaffold_43 . biological_region 103116 103118 0.999 + . logic_name=eponine scaffold_43 . biological_region 105077 105080 0.999 + . logic_name=eponine scaffold_43 . exon 100399 100500 . + . ID=Phyra79753.2;Parent=Phyra79753;constitutive=1;rank=2 scaffold_43 ensembl protein_coding_gene 100603 102155 . - . ID=Phyra79754;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000035;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 100603 102155 . - . ID=Phyra79754;Parent=Phyra79754;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 100603 101436 . - 0 ID=Phyra79754;Parent=Phyra79754;rank=3 scaffold_43 . exon 100603 101436 . - . ID=Phyra79754.3;Parent=Phyra79754;constitutive=1;rank=3 scaffold_43 . CDS 101516 101734 . - 0 ID=Phyra79754;Parent=Phyra79754;rank=2 scaffold_43 . exon 101516 101734 . - . ID=Phyra79754.2;Parent=Phyra79754;constitutive=1;rank=2 scaffold_43 . CDS 101802 102155 . - 0 ID=Phyra79754;Parent=Phyra79754;rank=1 scaffold_43 . exon 101802 102155 . - . ID=Phyra79754.1;Parent=Phyra79754;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 102774 104696 . + . ID=Phyra79755;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000036;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 102774 104696 . + . ID=Phyra79755;Parent=Phyra79755;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 102774 104696 . + 0 ID=Phyra79755;Parent=Phyra79755;rank=1 scaffold_43 . exon 102774 104696 . + . ID=Phyra79755.1;Parent=Phyra79755;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 105015 106961 . + . ID=Phyra79756;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000037;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 105015 106961 . + . ID=Phyra79756;Parent=Phyra79756;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 105015 106961 . + 0 ID=Phyra79756;Parent=Phyra79756;rank=1 scaffold_43 . exon 105015 106961 . + . ID=Phyra79756.1;Parent=Phyra79756;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 108453 109293 . - . ID=Phyra79757;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000038;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 108453 109293 . - . ID=Phyra79757;Parent=Phyra79757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 108453 108488 . - 0 ID=Phyra79757;Parent=Phyra79757;rank=3 scaffold_43 . exon 108453 108488 . - . ID=Phyra79757.3;Parent=Phyra79757;constitutive=1;rank=3 scaffold_43 . CDS 108530 108953 . - 0 ID=Phyra79757;Parent=Phyra79757;rank=2 scaffold_43 . exon 108530 108953 . - . ID=Phyra79757.2;Parent=Phyra79757;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 109013 109293 . - 0 ID=Phyra79757;Parent=Phyra79757;rank=1 scaffold_43 . exon 109013 109293 . - . ID=Phyra79757.1;Parent=Phyra79757;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . repeat_region 118820 118847 . ? . description=dust scaffold_43 ensembl protein_coding_gene 119446 120378 . - . ID=Phyra48969;biotype=protein_coding;external_name=gwEuk.43.115.1;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 119446 120378 . - . ID=Phyra48969;Parent=Phyra48969;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 119446 120378 . - 0 ID=Phyra48969;Parent=Phyra48969;rank=1 scaffold_43 . exon 119446 120378 . - . ID=Phyra48969.1;Parent=Phyra48969;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 110650 111633 . + . ID=Phyra79758;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000039;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 110650 111633 . + . ID=Phyra79758;Parent=Phyra79758;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 110650 111633 . + 0 ID=Phyra79758;Parent=Phyra79758;rank=1 scaffold_43 . exon 110650 111633 . + . ID=Phyra79758.1;Parent=Phyra79758;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 115288 116973 . - . ID=Phyra79760;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000041;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 115288 116973 . - . ID=Phyra79760;Parent=Phyra79760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 115288 116973 . - 0 ID=Phyra79760;Parent=Phyra79760;rank=1 scaffold_43 . exon 115288 116973 . - . ID=Phyra79760.1;Parent=Phyra79760;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 117689 119194 . + . ID=Phyra79761;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000042;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 117689 119194 . + . ID=Phyra79761;Parent=Phyra79761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 117689 119194 . + 0 ID=Phyra79761;Parent=Phyra79761;rank=1 scaffold_43 . exon 117689 119194 . + . ID=Phyra79761.1;Parent=Phyra79761;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 110278 110499 . - . ID=Phyra95478;biotype=protein_coding;external_name=C_scaffold_43000017;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 110278 110499 . - . ID=Phyra95478;Parent=Phyra95478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 110278 110364 . - 0 ID=Phyra95478;Parent=Phyra95478;rank=2 scaffold_43 . exon 110278 110364 . - . ID=Phyra95478.2;Parent=Phyra95478;constitutive=1;rank=2 scaffold_43 . CDS 110428 110499 . - 0 ID=Phyra95478;Parent=Phyra95478;rank=1 scaffold_43 . exon 110428 110499 . - . ID=Phyra95478.1;Parent=Phyra95478;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 111947 115085 . + . ID=Phyra95480;biotype=protein_coding;external_name=C_scaffold_43000019;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 111947 115085 . + . ID=Phyra95480;Parent=Phyra95480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 111947 112167 . + 0 ID=Phyra95480;Parent=Phyra95480;rank=1 scaffold_43 . exon 111947 112167 . + . ID=Phyra95480.1;Parent=Phyra95480;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 112195 112380 . + 0 ID=Phyra95480;Parent=Phyra95480;rank=2 scaffold_43 . exon 112195 112380 . + . ID=Phyra95480.2;Parent=Phyra95480;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_43 . CDS 112453 112578 . + 0 ID=Phyra95480;Parent=Phyra95480;rank=3 scaffold_43 . exon 112453 112578 . + . ID=Phyra95480.3;Parent=Phyra95480;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_43 . CDS 112651 112742 . + 0 ID=Phyra95480;Parent=Phyra95480;rank=4 scaffold_43 . exon 112651 112742 . + . ID=Phyra95480.4;Parent=Phyra95480;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_43 . CDS 112998 113261 . + 0 ID=Phyra95480;Parent=Phyra95480;rank=5 scaffold_43 . exon 112998 113261 . + . ID=Phyra95480.5;Parent=Phyra95480;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_43 . CDS 113985 114212 . + 0 ID=Phyra95480;Parent=Phyra95480;rank=6 scaffold_43 . exon 113985 114212 . + . ID=Phyra95480.6;Parent=Phyra95480;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_43 . CDS 114288 114350 . + 0 ID=Phyra95480;Parent=Phyra95480;rank=7 scaffold_43 . exon 114288 114350 . + . ID=Phyra95480.7;Parent=Phyra95480;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_43 . CDS 114421 114449 . + 0 ID=Phyra95480;Parent=Phyra95480;rank=8 scaffold_43 . exon 114421 114449 . + . ID=Phyra95480.8;Parent=Phyra95480;constitutive=1;ensembl_phase=1;rank=8 scaffold_43 . CDS 114516 114570 . + 0 ID=Phyra95480;Parent=Phyra95480;rank=9 scaffold_43 . exon 114516 114570 . + . ID=Phyra95480.9;Parent=Phyra95480;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_43 . CDS 114645 114723 . + 0 ID=Phyra95480;Parent=Phyra95480;rank=10 scaffold_43 . exon 114645 114723 . + . ID=Phyra95480.10;Parent=Phyra95480;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_43 . CDS 114790 114876 . + 0 ID=Phyra95480;Parent=Phyra95480;rank=11 scaffold_43 . exon 114790 114876 . + . ID=Phyra95480.11;Parent=Phyra95480;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_43 . CDS 114962 115085 . + 0 ID=Phyra95480;Parent=Phyra95480;rank=12 scaffold_43 . exon 114962 115085 . + . ID=Phyra95480.12;Parent=Phyra95480;constitutive=1;ensembl_phase=2;rank=12 scaffold_43 . biological_region 120503 120507 0.999 + . logic_name=eponine scaffold_43 ensembl protein_coding_gene 125568 126074 . - . ID=Phyra48974;biotype=protein_coding;external_name=gwEuk.43.120.1;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 125568 126074 . - . ID=Phyra48974;Parent=Phyra48974;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 125568 125652 . - 0 ID=Phyra48974;Parent=Phyra48974;rank=3 scaffold_43 . exon 125568 125652 . - . ID=Phyra48974.3;Parent=Phyra48974;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 125727 125782 . - 0 ID=Phyra48974;Parent=Phyra48974;rank=2 scaffold_43 . exon 125727 125782 . - . ID=Phyra48974.2;Parent=Phyra48974;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_43 . CDS 125856 126074 . - 0 ID=Phyra48974;Parent=Phyra48974;rank=1 scaffold_43 . exon 125856 126074 . - . ID=Phyra48974.1;Parent=Phyra48974;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 126398 128046 . + . ID=Phyra71732;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_43000007;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 126398 128046 . + . ID=Phyra71732;Parent=Phyra71732;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 126398 127862 . + 0 ID=Phyra71732;Parent=Phyra71732;rank=1 scaffold_43 . exon 126398 127862 . + . ID=Phyra71732.1;Parent=Phyra71732;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 127907 128046 . + 0 ID=Phyra71732;Parent=Phyra71732;rank=2 scaffold_43 . exon 127907 128046 . + . ID=Phyra71732.2;Parent=Phyra71732;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 ensembl protein_coding_gene 121586 121969 . + . ID=Phyra79763;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000044;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 121586 121969 . + . ID=Phyra79763;Parent=Phyra79763;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 121586 121969 . + 0 ID=Phyra79763;Parent=Phyra79763;rank=1 scaffold_43 . exon 121586 121969 . + . ID=Phyra79763.1;Parent=Phyra79763;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 122289 124244 . - . ID=Phyra79764;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000045;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 122289 124244 . - . ID=Phyra79764;Parent=Phyra79764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 122289 122342 . - 0 ID=Phyra79764;Parent=Phyra79764;rank=3 scaffold_43 . exon 122289 122342 . - . ID=Phyra79764.3;Parent=Phyra79764;constitutive=1;rank=3 scaffold_43 . CDS 122507 123459 . - 0 ID=Phyra79764;Parent=Phyra79764;rank=2 scaffold_43 . exon 122507 123459 . - . ID=Phyra79764.2;Parent=Phyra79764;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 123536 124244 . - 0 ID=Phyra79764;Parent=Phyra79764;rank=1 scaffold_43 . exon 123536 124244 . - . ID=Phyra79764.1;Parent=Phyra79764;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . repeat_region 135362 135379 . ? . description=dust scaffold_43 . repeat_region 135756 135777 . ? . description=dust scaffold_43 . repeat_region 136619 136632 . ? . description=dust scaffold_43 ensembl protein_coding_gene 138801 140364 . - . ID=Phyra79767;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000048;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 138801 140364 . - . ID=Phyra79767;Parent=Phyra79767;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 138801 138972 . - 0 ID=Phyra79767;Parent=Phyra79767;rank=3 scaffold_43 . exon 138801 138972 . - . ID=Phyra79767.3;Parent=Phyra79767;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 139044 139631 . - 0 ID=Phyra79767;Parent=Phyra79767;rank=2 scaffold_43 . exon 139044 139631 . - . ID=Phyra79767.2;Parent=Phyra79767;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_43 . CDS 139724 140364 . - 0 ID=Phyra79767;Parent=Phyra79767;rank=1 scaffold_43 ensembl protein_coding_gene 144507 145628 . + . ID=Phyra71733;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_43000008;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 144507 145628 . + . ID=Phyra71733;Parent=Phyra71733;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 144507 145628 . + 0 ID=Phyra71733;Parent=Phyra71733;rank=1 scaffold_43 . exon 144507 145628 . + . ID=Phyra71733.1;Parent=Phyra71733;constitutive=1;rank=1 scaffold_43 . exon 139724 140364 . - . ID=Phyra79767.1;Parent=Phyra79767;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 142723 144244 . + . ID=Phyra79768;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000049;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 142723 144244 . + . ID=Phyra79768;Parent=Phyra79768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 142723 143960 . + 0 ID=Phyra79768;Parent=Phyra79768;rank=1 scaffold_43 . exon 142723 143960 . + . ID=Phyra79768.1;Parent=Phyra79768;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 144037 144244 . + 0 ID=Phyra79768;Parent=Phyra79768;rank=2 scaffold_43 . exon 144037 144244 . + . ID=Phyra79768.2;Parent=Phyra79768;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 ensembl protein_coding_gene 145886 147706 . - . ID=Phyra79770;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000051;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 145886 147706 . - . ID=Phyra79770;Parent=Phyra79770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 145886 145953 . - 0 ID=Phyra79770;Parent=Phyra79770;rank=7 scaffold_43 . exon 145886 145953 . - . ID=Phyra79770.7;Parent=Phyra79770;constitutive=1;ensembl_phase=1;rank=7 scaffold_43 . CDS 146016 146209 . - 0 ID=Phyra79770;Parent=Phyra79770;rank=6 scaffold_43 . exon 146016 146209 . - . ID=Phyra79770.6;Parent=Phyra79770;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_43 . CDS 146279 146655 . - 0 ID=Phyra79770;Parent=Phyra79770;rank=5 scaffold_43 . exon 146279 146655 . - . ID=Phyra79770.5;Parent=Phyra79770;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_43 . CDS 146736 147133 . - 0 ID=Phyra79770;Parent=Phyra79770;rank=4 scaffold_43 . exon 146736 147133 . - . ID=Phyra79770.4;Parent=Phyra79770;constitutive=1;ensembl_phase=1;rank=4 scaffold_43 . CDS 147197 147304 . - 0 ID=Phyra79770;Parent=Phyra79770;rank=3 scaffold_43 . exon 147197 147304 . - . ID=Phyra79770.3;Parent=Phyra79770;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 147377 147549 . - 0 ID=Phyra79770;Parent=Phyra79770;rank=2 scaffold_43 . exon 147377 147549 . - . ID=Phyra79770.2;Parent=Phyra79770;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 147603 147706 . - 0 ID=Phyra79770;Parent=Phyra79770;rank=1 scaffold_43 . exon 147603 147706 . - . ID=Phyra79770.1;Parent=Phyra79770;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 148632 150543 . - . ID=Phyra79771;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000052;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 148632 150543 . - . ID=Phyra79771;Parent=Phyra79771;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 148632 148825 . - 0 ID=Phyra79771;Parent=Phyra79771;rank=6 scaffold_43 . exon 148632 148825 . - . ID=Phyra79771.6;Parent=Phyra79771;constitutive=1;ensembl_phase=1;rank=6 scaffold_43 . CDS 148894 149087 . - 0 ID=Phyra79771;Parent=Phyra79771;rank=5 scaffold_43 . exon 148894 149087 . - . ID=Phyra79771.5;Parent=Phyra79771;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_43 . CDS 149174 149550 . - 0 ID=Phyra79771;Parent=Phyra79771;rank=4 scaffold_43 . exon 149174 149550 . - . ID=Phyra79771.4;Parent=Phyra79771;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_43 . CDS 149622 150127 . - 0 ID=Phyra79771;Parent=Phyra79771;rank=3 scaffold_43 . CDS 150201 150403 . - 0 ID=Phyra79771;Parent=Phyra79771;rank=2 scaffold_43 . CDS 150470 150543 . - 0 ID=Phyra79771;Parent=Phyra79771;rank=1 scaffold_43 . biological_region 150471 150472 0.999 + . logic_name=eponine scaffold_43 . biological_region 151178 151180 0.999 + . logic_name=eponine scaffold_43 . biological_region 154767 154767 0.999 + . logic_name=eponine scaffold_43 . biological_region 154803 154805 0.999 - . logic_name=eponine scaffold_43 . biological_region 155932 155932 0.999 - . logic_name=eponine scaffold_43 . biological_region 155938 155939 0.999 + . logic_name=eponine scaffold_43 . biological_region 156060 156063 0.999 - . logic_name=eponine scaffold_43 . biological_region 156098 156098 0.999 - . logic_name=eponine scaffold_43 . biological_region 156615 156617 0.999 + . logic_name=eponine scaffold_43 . biological_region 157064 157070 0.999 - . logic_name=eponine scaffold_43 . biological_region 157085 157091 0.999 - . logic_name=eponine scaffold_43 . exon 149622 150127 . - . ID=Phyra79771.3;Parent=Phyra79771;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . exon 150201 150403 . - . ID=Phyra79771.2;Parent=Phyra79771;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_43 . exon 150470 150543 . - . ID=Phyra79771.1;Parent=Phyra79771;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 151757 154379 . + . ID=Phyra79772;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000053;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 151757 154379 . + . ID=Phyra79772;Parent=Phyra79772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 151757 152836 . + 0 ID=Phyra79772;Parent=Phyra79772;rank=1 scaffold_43 . exon 151757 152836 . + . ID=Phyra79772.1;Parent=Phyra79772;constitutive=1;rank=1 scaffold_43 . CDS 152901 154379 . + 0 ID=Phyra79772;Parent=Phyra79772;rank=2 scaffold_43 . exon 152901 154379 . + . ID=Phyra79772.2;Parent=Phyra79772;constitutive=1;rank=2 scaffold_43 ensembl protein_coding_gene 155873 156559 . + . ID=Phyra79773;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000054;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 155873 156559 . + . ID=Phyra79773;Parent=Phyra79773;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 155873 156559 . + 0 ID=Phyra79773;Parent=Phyra79773;rank=1 scaffold_43 . exon 155873 156559 . + . ID=Phyra79773.1;Parent=Phyra79773;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 156903 158330 . + . ID=Phyra79774;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000055;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 156903 158330 . + . ID=Phyra79774;Parent=Phyra79774;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 156903 158075 . + 0 ID=Phyra79774;Parent=Phyra79774;rank=1 scaffold_43 . exon 156903 158075 . + . ID=Phyra79774.1;Parent=Phyra79774;constitutive=1;rank=1 scaffold_43 . CDS 158139 158330 . + 0 ID=Phyra79774;Parent=Phyra79774;rank=2 scaffold_43 . exon 158139 158330 . + . ID=Phyra79774.2;Parent=Phyra79774;constitutive=1;rank=2 scaffold_43 ensembl protein_coding_gene 158473 160392 . - . ID=Phyra79775;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000056;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 158473 160392 . - . ID=Phyra79775;Parent=Phyra79775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 158473 160392 . - 0 ID=Phyra79775;Parent=Phyra79775;rank=1 scaffold_43 . exon 158473 160392 . - . ID=Phyra79775.1;Parent=Phyra79775;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 163789 164406 . + . ID=Phyra48984;biotype=protein_coding;external_name=gwEuk.43.130.1;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 163789 164406 . + . ID=Phyra48984;Parent=Phyra48984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 163789 164406 . + 0 ID=Phyra48984;Parent=Phyra48984;rank=1 scaffold_43 . exon 163789 164406 . + . ID=Phyra48984.1;Parent=Phyra48984;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 160550 162019 . - . ID=Phyra79776;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000057;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 160550 162019 . - . ID=Phyra79776;Parent=Phyra79776;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 160550 160897 . - 0 ID=Phyra79776;Parent=Phyra79776;rank=6 scaffold_43 . exon 160550 160897 . - . ID=Phyra79776.6;Parent=Phyra79776;constitutive=1;rank=6 scaffold_43 . CDS 160981 161206 . - 0 ID=Phyra79776;Parent=Phyra79776;rank=5 scaffold_43 . exon 160981 161206 . - . ID=Phyra79776.5;Parent=Phyra79776;constitutive=1;ensembl_phase=2;rank=5 scaffold_43 . CDS 161281 161354 . - 0 ID=Phyra79776;Parent=Phyra79776;rank=4 scaffold_43 . exon 161281 161354 . - . ID=Phyra79776.4;Parent=Phyra79776;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_43 . CDS 161449 161579 . - 0 ID=Phyra79776;Parent=Phyra79776;rank=3 scaffold_43 . exon 161449 161579 . - . ID=Phyra79776.3;Parent=Phyra79776;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 161658 161853 . - 0 ID=Phyra79776;Parent=Phyra79776;rank=2 scaffold_43 . exon 161658 161853 . - . ID=Phyra79776.2;Parent=Phyra79776;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_43 . CDS 161951 162019 . - 0 ID=Phyra79776;Parent=Phyra79776;rank=1 scaffold_43 . exon 161951 162019 . - . ID=Phyra79776.1;Parent=Phyra79776;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 162346 163583 . - . ID=Phyra79777;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000058;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 162346 163583 . - . ID=Phyra79777;Parent=Phyra79777;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 162346 162877 . - 0 ID=Phyra79777;Parent=Phyra79777;rank=3 scaffold_43 . exon 162346 162877 . - . ID=Phyra79777.3;Parent=Phyra79777;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 162946 163024 . - 0 ID=Phyra79777;Parent=Phyra79777;rank=2 scaffold_43 . exon 162946 163024 . - . ID=Phyra79777.2;Parent=Phyra79777;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_43 . CDS 163091 163583 . - 0 ID=Phyra79777;Parent=Phyra79777;rank=1 scaffold_43 . exon 163091 163583 . - . ID=Phyra79777.1;Parent=Phyra79777;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 164754 168440 . - . ID=Phyra79779;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000060;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 164754 168440 . - . ID=Phyra79779;Parent=Phyra79779;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 164754 167171 . - 0 ID=Phyra79779;Parent=Phyra79779;rank=5 scaffold_43 . exon 164754 167171 . - . ID=Phyra79779.5;Parent=Phyra79779;constitutive=1;rank=5 scaffold_43 . CDS 167246 167352 . - 0 ID=Phyra79779;Parent=Phyra79779;rank=4 scaffold_43 . exon 167246 167352 . - . ID=Phyra79779.4;Parent=Phyra79779;constitutive=1;ensembl_phase=1;rank=4 scaffold_43 . CDS 167417 167733 . - 0 ID=Phyra79779;Parent=Phyra79779;rank=3 scaffold_43 . exon 167417 167733 . - . ID=Phyra79779.3;Parent=Phyra79779;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 167941 168089 . - 0 ID=Phyra79779;Parent=Phyra79779;rank=2 scaffold_43 . exon 167941 168089 . - . ID=Phyra79779.2;Parent=Phyra79779;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_43 . CDS 168258 168440 . - 0 ID=Phyra79779;Parent=Phyra79779;rank=1 scaffold_43 . exon 168258 168440 . - . ID=Phyra79779.1;Parent=Phyra79779;constitutive=1;rank=1 scaffold_43 . biological_region 169828 169832 0.999 + . logic_name=eponine scaffold_43 . biological_region 171027 171028 0.999 + . logic_name=eponine scaffold_43 . biological_region 177045 177046 0.999 + . logic_name=eponine scaffold_43 . repeat_region 177427 177435 . ? . description=dust scaffold_43 . biological_region 178127 178129 0.999 + . logic_name=eponine scaffold_43 . biological_region 178271 178271 0.999 - . logic_name=eponine scaffold_43 . biological_region 178325 178326 0.999 - . logic_name=eponine scaffold_43 . biological_region 178882 178889 0.999 + . logic_name=eponine scaffold_43 ensembl protein_coding_gene 173736 174509 . + . ID=Phyra48985;biotype=protein_coding;external_name=gwEuk.43.131.1;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 173736 174509 . + . ID=Phyra48985;Parent=Phyra48985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 173736 174509 . + 0 ID=Phyra48985;Parent=Phyra48985;rank=1 scaffold_43 . exon 173736 174509 . + . ID=Phyra48985.1;Parent=Phyra48985;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 176906 177391 . - . ID=Phyra71735;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_43000010;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 176906 177391 . - . ID=Phyra71735;Parent=Phyra71735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 176906 177391 . - 0 ID=Phyra71735;Parent=Phyra71735;rank=1 scaffold_43 . exon 176906 177391 . - . ID=Phyra71735.1;Parent=Phyra71735;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 178083 178580 . + . ID=Phyra79782;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000063;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 178083 178580 . + . ID=Phyra79782;Parent=Phyra79782;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 178083 178580 . + 0 ID=Phyra79782;Parent=Phyra79782;rank=1 scaffold_43 . exon 178083 178580 . + . ID=Phyra79782.1;Parent=Phyra79782;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 178669 183246 . - . ID=Phyra95485;biotype=protein_coding;external_name=C_scaffold_43000024;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 178669 183246 . - . ID=Phyra95485;Parent=Phyra95485;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 178669 179156 . - 0 ID=Phyra95485;Parent=Phyra95485;rank=14 scaffold_43 . exon 178669 179156 . - . ID=Phyra95485.14;Parent=Phyra95485;constitutive=1;ensembl_phase=1;rank=14 scaffold_43 . CDS 179439 179832 . - 0 ID=Phyra95485;Parent=Phyra95485;rank=13 scaffold_43 . exon 179439 179832 . - . ID=Phyra95485.13;Parent=Phyra95485;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_43 . CDS 179914 180380 . - 0 ID=Phyra95485;Parent=Phyra95485;rank=12 scaffold_43 . CDS 180456 181341 . - 0 ID=Phyra95485;Parent=Phyra95485;rank=11 scaffold_43 . CDS 181541 181586 . - 0 ID=Phyra95485;Parent=Phyra95485;rank=10 scaffold_43 . CDS 181662 181774 . - 0 ID=Phyra95485;Parent=Phyra95485;rank=9 scaffold_43 . CDS 181922 182043 . - 0 ID=Phyra95485;Parent=Phyra95485;rank=8 scaffold_43 . CDS 182065 182166 . - 0 ID=Phyra95485;Parent=Phyra95485;rank=7 scaffold_43 . CDS 182229 182313 . - 0 ID=Phyra95485;Parent=Phyra95485;rank=6 scaffold_43 . CDS 182387 182453 . - 0 ID=Phyra95485;Parent=Phyra95485;rank=5 scaffold_43 . CDS 182512 182581 . - 0 ID=Phyra95485;Parent=Phyra95485;rank=4 scaffold_43 . CDS 182670 182756 . - 0 ID=Phyra95485;Parent=Phyra95485;rank=3 scaffold_43 . CDS 182827 183063 . - 0 ID=Phyra95485;Parent=Phyra95485;rank=2 scaffold_43 . CDS 183129 183246 . - 0 ID=Phyra95485;Parent=Phyra95485;rank=1 scaffold_43 . repeat_region 181537 181581 . ? . description=trf scaffold_43 . exon 179914 180380 . - . ID=Phyra95485.12;Parent=Phyra95485;constitutive=1;ensembl_phase=1;rank=12 scaffold_43 . exon 180456 181341 . - . ID=Phyra95485.11;Parent=Phyra95485;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_43 . exon 181541 181586 . - . ID=Phyra95485.10;Parent=Phyra95485;constitutive=1;ensembl_phase=2;rank=10 scaffold_43 . exon 181662 181774 . - . ID=Phyra95485.9;Parent=Phyra95485;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_43 . exon 181922 182043 . - . ID=Phyra95485.8;Parent=Phyra95485;constitutive=1;ensembl_phase=1;rank=8 scaffold_43 . exon 182065 182166 . - . ID=Phyra95485.7;Parent=Phyra95485;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_43 . exon 182229 182313 . - . ID=Phyra95485.6;Parent=Phyra95485;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_43 . exon 182387 182453 . - . ID=Phyra95485.5;Parent=Phyra95485;constitutive=1;ensembl_phase=2;rank=5 scaffold_43 . exon 182512 182581 . - . ID=Phyra95485.4;Parent=Phyra95485;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_43 . exon 182670 182756 . - . ID=Phyra95485.3;Parent=Phyra95485;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_43 . exon 182827 183063 . - . ID=Phyra95485.2;Parent=Phyra95485;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_43 . exon 183129 183246 . - . ID=Phyra95485.1;Parent=Phyra95485;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 186803 188686 . + . ID=Phyra95487;biotype=protein_coding;external_name=C_scaffold_43000026;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 186803 188686 . + . ID=Phyra95487;Parent=Phyra95487;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 186803 187070 . + 0 ID=Phyra95487;Parent=Phyra95487;rank=1 scaffold_43 . exon 186803 187070 . + . ID=Phyra95487.1;Parent=Phyra95487;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 187143 187598 . + 0 ID=Phyra95487;Parent=Phyra95487;rank=2 scaffold_43 . exon 187143 187598 . + . ID=Phyra95487.2;Parent=Phyra95487;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 187778 188393 . + 0 ID=Phyra95487;Parent=Phyra95487;rank=3 scaffold_43 . exon 187778 188393 . + . ID=Phyra95487.3;Parent=Phyra95487;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_43 . CDS 188466 188547 . + 0 ID=Phyra95487;Parent=Phyra95487;rank=4 scaffold_43 . exon 188466 188547 . + . ID=Phyra95487.4;Parent=Phyra95487;constitutive=1;ensembl_phase=2;rank=4 scaffold_43 . CDS 188630 188686 . + 0 ID=Phyra95487;Parent=Phyra95487;rank=5 scaffold_43 . exon 188630 188686 . + . ID=Phyra95487.5;Parent=Phyra95487;constitutive=1;rank=5 scaffold_43 . biological_region 191713 191717 0.999 + . logic_name=eponine scaffold_43 . biological_region 193234 193238 0.999 + . logic_name=eponine scaffold_43 . biological_region 193281 193281 0.999 + . logic_name=eponine scaffold_43 . biological_region 193499 193501 0.999 - . logic_name=eponine scaffold_43 . biological_region 193936 193939 0.999 + . logic_name=eponine scaffold_43 . biological_region 194008 194013 0.999 + . logic_name=eponine scaffold_43 . repeat_region 194604 194653 . ? . description=dust scaffold_43 ensembl protein_coding_gene 191070 193367 . - . ID=Phyra79785;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000066;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 191070 193367 . - . ID=Phyra79785;Parent=Phyra79785;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 191070 193367 . - 0 ID=Phyra79785;Parent=Phyra79785;rank=1 scaffold_43 . exon 191070 193367 . - . ID=Phyra79785.1;Parent=Phyra79785;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 195930 199904 . + . ID=Phyra95490;biotype=protein_coding;external_name=C_scaffold_43000029;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 195930 199904 . + . ID=Phyra95490;Parent=Phyra95490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 195930 196060 . + 0 ID=Phyra95490;Parent=Phyra95490;rank=1 scaffold_43 . exon 195930 196060 . + . ID=Phyra95490.1;Parent=Phyra95490;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 196144 196213 . + 0 ID=Phyra95490;Parent=Phyra95490;rank=2 scaffold_43 . exon 196144 196213 . + . ID=Phyra95490.2;Parent=Phyra95490;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 196919 197021 . + 0 ID=Phyra95490;Parent=Phyra95490;rank=3 scaffold_43 . exon 196919 197021 . + . ID=Phyra95490.3;Parent=Phyra95490;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_43 . CDS 197133 197234 . + 0 ID=Phyra95490;Parent=Phyra95490;rank=4 scaffold_43 . exon 197133 197234 . + . ID=Phyra95490.4;Parent=Phyra95490;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_43 . CDS 197304 197542 . + 0 ID=Phyra95490;Parent=Phyra95490;rank=5 scaffold_43 . exon 197304 197542 . + . ID=Phyra95490.5;Parent=Phyra95490;constitutive=1;ensembl_phase=1;rank=5 scaffold_43 . CDS 197667 197839 . + 0 ID=Phyra95490;Parent=Phyra95490;rank=6 scaffold_43 . exon 197667 197839 . + . ID=Phyra95490.6;Parent=Phyra95490;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_43 . CDS 197960 198086 . + 0 ID=Phyra95490;Parent=Phyra95490;rank=7 scaffold_43 . exon 197960 198086 . + . ID=Phyra95490.7;Parent=Phyra95490;constitutive=1;ensembl_phase=2;rank=7 scaffold_43 . CDS 198633 198723 . + 0 ID=Phyra95490;Parent=Phyra95490;rank=8 scaffold_43 . exon 198633 198723 . + . ID=Phyra95490.8;Parent=Phyra95490;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_43 . CDS 198997 199493 . + 0 ID=Phyra95490;Parent=Phyra95490;rank=9 scaffold_43 . exon 198997 199493 . + . ID=Phyra95490.9;Parent=Phyra95490;constitutive=1;ensembl_phase=1;rank=9 scaffold_43 . CDS 199662 199790 . + 0 ID=Phyra95490;Parent=Phyra95490;rank=10 scaffold_43 . CDS 199833 199904 . + 0 ID=Phyra95490;Parent=Phyra95490;rank=11 scaffold_43 ensembl protein_coding_gene 207280 208368 . + . ID=Phyra48862;biotype=protein_coding;external_name=gwEuk.43.8.1;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 207280 208368 . + . ID=Phyra48862;Parent=Phyra48862;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 207280 208368 . + 0 ID=Phyra48862;Parent=Phyra48862;rank=1 scaffold_43 . exon 207280 208368 . + . ID=Phyra48862.1;Parent=Phyra48862;constitutive=1;rank=1 scaffold_43 . exon 199662 199790 . + . ID=Phyra95490.10;Parent=Phyra95490;constitutive=1;rank=10 scaffold_43 . exon 199833 199904 . + . ID=Phyra95490.11;Parent=Phyra95490;constitutive=1;rank=11 scaffold_43 ensembl protein_coding_gene 200574 205383 . + . ID=Phyra95493;biotype=protein_coding;external_name=C_scaffold_43000032;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 200574 205383 . + . ID=Phyra95493;Parent=Phyra95493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 200574 201000 . + 0 ID=Phyra95493;Parent=Phyra95493;rank=1 scaffold_43 . exon 200574 201000 . + . ID=Phyra95493.1;Parent=Phyra95493;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 201046 202144 . + 0 ID=Phyra95493;Parent=Phyra95493;rank=2 scaffold_43 . exon 201046 202144 . + . ID=Phyra95493.2;Parent=Phyra95493;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_43 . CDS 202216 202395 . + 0 ID=Phyra95493;Parent=Phyra95493;rank=3 scaffold_43 . exon 202216 202395 . + . ID=Phyra95493.3;Parent=Phyra95493;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_43 . CDS 202602 202784 . + 0 ID=Phyra95493;Parent=Phyra95493;rank=4 scaffold_43 . exon 202602 202784 . + . ID=Phyra95493.4;Parent=Phyra95493;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_43 . CDS 202842 202968 . + 0 ID=Phyra95493;Parent=Phyra95493;rank=5 scaffold_43 . exon 202842 202968 . + . ID=Phyra95493.5;Parent=Phyra95493;constitutive=1;ensembl_phase=2;rank=5 scaffold_43 . CDS 203045 203093 . + 0 ID=Phyra95493;Parent=Phyra95493;rank=6 scaffold_43 . exon 203045 203093 . + . ID=Phyra95493.6;Parent=Phyra95493;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_43 . CDS 203157 203264 . + 0 ID=Phyra95493;Parent=Phyra95493;rank=7 scaffold_43 . exon 203157 203264 . + . ID=Phyra95493.7;Parent=Phyra95493;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_43 . CDS 203342 203502 . + 0 ID=Phyra95493;Parent=Phyra95493;rank=8 scaffold_43 . exon 203342 203502 . + . ID=Phyra95493.8;Parent=Phyra95493;constitutive=1;ensembl_phase=1;rank=8 scaffold_43 . CDS 203598 203698 . + 0 ID=Phyra95493;Parent=Phyra95493;rank=9 scaffold_43 . exon 203598 203698 . + . ID=Phyra95493.9;Parent=Phyra95493;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_43 . CDS 203838 203931 . + 0 ID=Phyra95493;Parent=Phyra95493;rank=10 scaffold_43 . exon 203838 203931 . + . ID=Phyra95493.10;Parent=Phyra95493;constitutive=1;ensembl_phase=2;rank=10 scaffold_43 . CDS 203999 204151 . + 0 ID=Phyra95493;Parent=Phyra95493;rank=11 scaffold_43 . exon 203999 204151 . + . ID=Phyra95493.11;Parent=Phyra95493;constitutive=1;rank=11 scaffold_43 . CDS 204219 204416 . + 0 ID=Phyra95493;Parent=Phyra95493;rank=12 scaffold_43 . exon 204219 204416 . + . ID=Phyra95493.12;Parent=Phyra95493;constitutive=1;rank=12 scaffold_43 . CDS 204727 204769 . + 0 ID=Phyra95493;Parent=Phyra95493;rank=13 scaffold_43 . exon 204727 204769 . + . ID=Phyra95493.13;Parent=Phyra95493;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_43 . CDS 204890 205383 . + 0 ID=Phyra95493;Parent=Phyra95493;rank=14 scaffold_43 . exon 204890 205383 . + . ID=Phyra95493.14;Parent=Phyra95493;constitutive=1;ensembl_phase=1;rank=14 scaffold_43 . biological_region 209725 209727 0.999 + . logic_name=eponine scaffold_43 . biological_region 210660 210662 0.999 + . logic_name=eponine scaffold_43 . biological_region 210778 210781 0.999 - . logic_name=eponine scaffold_43 . biological_region 213049 213051 0.999 - . logic_name=eponine scaffold_43 . biological_region 213139 213144 0.999 - . logic_name=eponine scaffold_43 . repeat_region 217656 217708 . ? . description=trf scaffold_43 ensembl protein_coding_gene 209416 210341 . - . ID=Phyra71736;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_43000011;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 209416 210341 . - . ID=Phyra71736;Parent=Phyra71736;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 209416 209900 . - 0 ID=Phyra71736;Parent=Phyra71736;rank=4 scaffold_43 . exon 209416 209900 . - . ID=Phyra71736.4;Parent=Phyra71736;constitutive=1;ensembl_phase=1;rank=4 scaffold_43 . CDS 209970 210051 . - 0 ID=Phyra71736;Parent=Phyra71736;rank=3 scaffold_43 . exon 209970 210051 . - . ID=Phyra71736.3;Parent=Phyra71736;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_43 . CDS 210115 210209 . - 0 ID=Phyra71736;Parent=Phyra71736;rank=2 scaffold_43 . exon 210115 210209 . - . ID=Phyra71736.2;Parent=Phyra71736;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 210275 210341 . - 0 ID=Phyra71736;Parent=Phyra71736;rank=1 scaffold_43 . exon 210275 210341 . - . ID=Phyra71736.1;Parent=Phyra71736;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 210564 211490 . + . ID=Phyra71737;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_43000012;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 210564 211490 . + . ID=Phyra71737;Parent=Phyra71737;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 210564 211490 . + 0 ID=Phyra71737;Parent=Phyra71737;rank=1 scaffold_43 . exon 210564 211490 . + . ID=Phyra71737.1;Parent=Phyra71737;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 211659 213496 . - . ID=Phyra79792;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000073;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 211659 213496 . - . ID=Phyra79792;Parent=Phyra79792;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 211659 211823 . - 0 ID=Phyra79792;Parent=Phyra79792;rank=3 scaffold_43 . exon 211659 211823 . - . ID=Phyra79792.3;Parent=Phyra79792;constitutive=1;rank=3 scaffold_43 . CDS 211887 213217 . - 0 ID=Phyra79792;Parent=Phyra79792;rank=2 scaffold_43 . exon 211887 213217 . - . ID=Phyra79792.2;Parent=Phyra79792;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 213295 213496 . - 0 ID=Phyra79792;Parent=Phyra79792;rank=1 scaffold_43 . exon 213295 213496 . - . ID=Phyra79792.1;Parent=Phyra79792;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 214480 216354 . + . ID=Phyra79793;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000074;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 214480 216354 . + . ID=Phyra79793;Parent=Phyra79793;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 214480 216354 . + 0 ID=Phyra79793;Parent=Phyra79793;rank=1 scaffold_43 . exon 214480 216354 . + . ID=Phyra79793.1;Parent=Phyra79793;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 216554 217427 . + . ID=Phyra79794;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000075;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 216554 217427 . + . ID=Phyra79794;Parent=Phyra79794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 216554 216793 . + 0 ID=Phyra79794;Parent=Phyra79794;rank=1 scaffold_43 . exon 216554 216793 . + . ID=Phyra79794.1;Parent=Phyra79794;constitutive=1;rank=1 scaffold_43 . CDS 216867 217427 . + 0 ID=Phyra79794;Parent=Phyra79794;rank=2 scaffold_43 . exon 216867 217427 . + . ID=Phyra79794.2;Parent=Phyra79794;constitutive=1;rank=2 scaffold_43 ensembl protein_coding_gene 217551 220097 . - . ID=Phyra79795;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000076;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 217551 220097 . - . ID=Phyra79795;Parent=Phyra79795;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 217551 217958 . - 0 ID=Phyra79795;Parent=Phyra79795;rank=6 scaffold_43 . exon 217551 217958 . - . ID=Phyra79795.6;Parent=Phyra79795;constitutive=1;rank=6 scaffold_43 . CDS 218030 218140 . - 0 ID=Phyra79795;Parent=Phyra79795;rank=5 scaffold_43 . exon 218030 218140 . - . ID=Phyra79795.5;Parent=Phyra79795;constitutive=1;rank=5 scaffold_43 . CDS 218217 218680 . - 0 ID=Phyra79795;Parent=Phyra79795;rank=4 scaffold_43 . exon 218217 218680 . - . ID=Phyra79795.4;Parent=Phyra79795;constitutive=1;ensembl_phase=1;rank=4 scaffold_43 . CDS 218786 218976 . - 0 ID=Phyra79795;Parent=Phyra79795;rank=3 scaffold_43 . exon 218786 218976 . - . ID=Phyra79795.3;Parent=Phyra79795;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 219037 219430 . - 0 ID=Phyra79795;Parent=Phyra79795;rank=2 scaffold_43 . exon 219037 219430 . - . ID=Phyra79795.2;Parent=Phyra79795;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_43 . CDS 219536 220097 . - 0 ID=Phyra79795;Parent=Phyra79795;rank=1 scaffold_43 ensembl snRNA_gene 225877 226039 . + . ID=EPrPRAG00000000107;biotype=snRNA;description=U12 minor spliceosomal RNA [Source:RFAM%3BAcc:RF00007];external_name=U12;logic_name=ncrna_eg scaffold_43 ensembl snRNA 225877 226039 . + . ID=EPrPRAT00000000107;Parent=EPrPRAG00000000107;biotype=snRNA;logic_name=ncrna_eg scaffold_43 . exon 225877 226039 . + . ID=EPrPRAE00000000107;Parent=EPrPRAT00000000107;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . exon 219536 220097 . - . ID=Phyra79795.1;Parent=Phyra79795;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 220262 225678 . + . ID=Phyra79796;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000077;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 220262 225678 . + . ID=Phyra79796;Parent=Phyra79796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 220262 220444 . + 0 ID=Phyra79796;Parent=Phyra79796;rank=1 scaffold_43 . exon 220262 220444 . + . ID=Phyra79796.1;Parent=Phyra79796;constitutive=1;rank=1 scaffold_43 . CDS 220501 225678 . + 0 ID=Phyra79796;Parent=Phyra79796;rank=2 scaffold_43 . exon 220501 225678 . + . ID=Phyra79796.2;Parent=Phyra79796;constitutive=1;rank=2 scaffold_43 ensembl protein_coding_gene 226437 227823 . + . ID=Phyra79797;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000078;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 226437 227823 . + . ID=Phyra79797;Parent=Phyra79797;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 226437 226539 . + 0 ID=Phyra79797;Parent=Phyra79797;rank=1 scaffold_43 . exon 226437 226539 . + . ID=Phyra79797.1;Parent=Phyra79797;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 226615 226700 . + 0 ID=Phyra79797;Parent=Phyra79797;rank=2 scaffold_43 . exon 226615 226700 . + . ID=Phyra79797.2;Parent=Phyra79797;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 226782 226899 . + 0 ID=Phyra79797;Parent=Phyra79797;rank=3 scaffold_43 . exon 226782 226899 . + . ID=Phyra79797.3;Parent=Phyra79797;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_43 . CDS 226960 227140 . + 0 ID=Phyra79797;Parent=Phyra79797;rank=4 scaffold_43 . exon 226960 227140 . + . ID=Phyra79797.4;Parent=Phyra79797;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_43 . CDS 227232 227379 . + 0 ID=Phyra79797;Parent=Phyra79797;rank=5 scaffold_43 . exon 227232 227379 . + . ID=Phyra79797.5;Parent=Phyra79797;constitutive=1;ensembl_phase=2;rank=5 scaffold_43 . CDS 227467 227633 . + 0 ID=Phyra79797;Parent=Phyra79797;rank=6 scaffold_43 . exon 227467 227633 . + . ID=Phyra79797.6;Parent=Phyra79797;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_43 . CDS 227775 227823 . + 0 ID=Phyra79797;Parent=Phyra79797;rank=7 scaffold_43 . exon 227775 227823 . + . ID=Phyra79797.7;Parent=Phyra79797;constitutive=1;ensembl_phase=2;rank=7 scaffold_43 . biological_region 229585 229588 0.999 - . logic_name=eponine scaffold_43 . biological_region 229749 229750 0.999 - . logic_name=eponine scaffold_43 . repeat_region 229757 229775 . ? . description=dust scaffold_43 . biological_region 229919 229923 0.999 + . logic_name=eponine scaffold_43 . biological_region 230016 230019 0.999 + . logic_name=eponine scaffold_43 . biological_region 230247 230252 0.999 - . logic_name=eponine scaffold_43 . repeat_region 230781 230798 . ? . description=dust scaffold_43 . repeat_region 230917 230952 . ? . description=trf scaffold_43 . biological_region 231433 231434 0.999 - . logic_name=eponine scaffold_43 . biological_region 231624 231625 0.999 - . logic_name=eponine scaffold_43 . biological_region 234795 234797 0.999 - . logic_name=eponine scaffold_43 ensembl protein_coding_gene 237759 238506 . - . ID=Phyra71738;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_43000013;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 237759 238506 . - . ID=Phyra71738;Parent=Phyra71738;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 237759 237863 . - 0 ID=Phyra71738;Parent=Phyra71738;rank=4 scaffold_43 . exon 237759 237863 . - . ID=Phyra71738.4;Parent=Phyra71738;constitutive=1;rank=4 scaffold_43 . CDS 237930 238007 . - 0 ID=Phyra71738;Parent=Phyra71738;rank=3 scaffold_43 . exon 237930 238007 . - . ID=Phyra71738.3;Parent=Phyra71738;constitutive=1;rank=3 scaffold_43 . CDS 238093 238325 . - 0 ID=Phyra71738;Parent=Phyra71738;rank=2 scaffold_43 . exon 238093 238325 . - . ID=Phyra71738.2;Parent=Phyra71738;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 238416 238506 . - 0 ID=Phyra71738;Parent=Phyra71738;rank=1 scaffold_43 . exon 238416 238506 . - . ID=Phyra71738.1;Parent=Phyra71738;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 229482 230699 . + . ID=Phyra79798;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000079;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 229482 230699 . + . ID=Phyra79798;Parent=Phyra79798;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 229482 230699 . + 0 ID=Phyra79798;Parent=Phyra79798;rank=1 scaffold_43 . exon 229482 230699 . + . ID=Phyra79798.1;Parent=Phyra79798;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 230946 231743 . - . ID=Phyra79799;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000080;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 230946 231743 . - . ID=Phyra79799;Parent=Phyra79799;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 230946 231743 . - 0 ID=Phyra79799;Parent=Phyra79799;rank=1 scaffold_43 . exon 230946 231743 . - . ID=Phyra79799.1;Parent=Phyra79799;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 233336 237303 . - . ID=Phyra79800;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000081;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 233336 237303 . - . ID=Phyra79800;Parent=Phyra79800;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 233336 233347 . - 0 ID=Phyra79800;Parent=Phyra79800;rank=8 scaffold_43 . exon 233336 233347 . - . ID=Phyra79800.8;Parent=Phyra79800;constitutive=1;rank=8 scaffold_43 . CDS 233418 233456 . - 0 ID=Phyra79800;Parent=Phyra79800;rank=7 scaffold_43 . exon 233418 233456 . - . ID=Phyra79800.7;Parent=Phyra79800;constitutive=1;rank=7 scaffold_43 . CDS 233583 233723 . - 0 ID=Phyra79800;Parent=Phyra79800;rank=6 scaffold_43 . exon 233583 233723 . - . ID=Phyra79800.6;Parent=Phyra79800;constitutive=1;rank=6 scaffold_43 . CDS 233800 233888 . - 0 ID=Phyra79800;Parent=Phyra79800;rank=5 scaffold_43 . exon 233800 233888 . - . ID=Phyra79800.5;Parent=Phyra79800;constitutive=1;ensembl_phase=1;rank=5 scaffold_43 . CDS 233964 234156 . - 0 ID=Phyra79800;Parent=Phyra79800;rank=4 scaffold_43 . exon 233964 234156 . - . ID=Phyra79800.4;Parent=Phyra79800;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_43 . CDS 234237 234405 . - 0 ID=Phyra79800;Parent=Phyra79800;rank=3 scaffold_43 . exon 234237 234405 . - . ID=Phyra79800.3;Parent=Phyra79800;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 234515 234552 . - 0 ID=Phyra79800;Parent=Phyra79800;rank=2 scaffold_43 . exon 234515 234552 . - . ID=Phyra79800.2;Parent=Phyra79800;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_43 . CDS 234631 237303 . - 0 ID=Phyra79800;Parent=Phyra79800;rank=1 scaffold_43 . exon 234631 237303 . - . ID=Phyra79800.1;Parent=Phyra79800;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 238663 242439 . - . ID=Phyra79802;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000083;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 238663 242439 . - . ID=Phyra79802;Parent=Phyra79802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 238663 239792 . - 0 ID=Phyra79802;Parent=Phyra79802;rank=7 scaffold_43 . exon 238663 239792 . - . ID=Phyra79802.7;Parent=Phyra79802;constitutive=1;ensembl_phase=1;rank=7 scaffold_43 . CDS 239865 240065 . - 0 ID=Phyra79802;Parent=Phyra79802;rank=6 scaffold_43 . CDS 240633 240744 . - 0 ID=Phyra79802;Parent=Phyra79802;rank=5 scaffold_43 . CDS 240818 240935 . - 0 ID=Phyra79802;Parent=Phyra79802;rank=4 scaffold_43 . CDS 241017 241210 . - 0 ID=Phyra79802;Parent=Phyra79802;rank=3 scaffold_43 . CDS 241290 241463 . - 0 ID=Phyra79802;Parent=Phyra79802;rank=2 scaffold_43 . CDS 241531 242439 . - 0 ID=Phyra79802;Parent=Phyra79802;rank=1 scaffold_43 . exon 239865 240065 . - . ID=Phyra79802.6;Parent=Phyra79802;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_43 . exon 240633 240744 . - . ID=Phyra79802.5;Parent=Phyra79802;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_43 . exon 240818 240935 . - . ID=Phyra79802.4;Parent=Phyra79802;constitutive=1;ensembl_phase=2;rank=4 scaffold_43 . exon 241017 241210 . - . ID=Phyra79802.3;Parent=Phyra79802;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_43 . exon 241290 241463 . - . ID=Phyra79802.2;Parent=Phyra79802;constitutive=1;rank=2 scaffold_43 . exon 241531 242439 . - . ID=Phyra79802.1;Parent=Phyra79802;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 242786 244733 . + . ID=Phyra95499;biotype=protein_coding;external_name=C_scaffold_43000038;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 242786 244733 . + . ID=Phyra95499;Parent=Phyra95499;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 242786 243222 . + 0 ID=Phyra95499;Parent=Phyra95499;rank=1 scaffold_43 . exon 242786 243222 . + . ID=Phyra95499.1;Parent=Phyra95499;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 243634 243779 . + 0 ID=Phyra95499;Parent=Phyra95499;rank=2 scaffold_43 . exon 243634 243779 . + . ID=Phyra95499.2;Parent=Phyra95499;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 244218 244555 . + 0 ID=Phyra95499;Parent=Phyra95499;rank=3 scaffold_43 . exon 244218 244555 . + . ID=Phyra95499.3;Parent=Phyra95499;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 244629 244733 . + 0 ID=Phyra95499;Parent=Phyra95499;rank=4 scaffold_43 . exon 244629 244733 . + . ID=Phyra95499.4;Parent=Phyra95499;constitutive=1;rank=4 scaffold_43 . biological_region 258432 258439 0.999 + . logic_name=eponine scaffold_43 ensembl protein_coding_gene 259018 262088 . + . ID=Phyra79806;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000087;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 259018 262088 . + . ID=Phyra79806;Parent=Phyra79806;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 259018 259426 . + 0 ID=Phyra79806;Parent=Phyra79806;rank=1 scaffold_43 . exon 259018 259426 . + . ID=Phyra79806.1;Parent=Phyra79806;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 259507 259610 . + 0 ID=Phyra79806;Parent=Phyra79806;rank=2 scaffold_43 . CDS 259677 259798 . + 0 ID=Phyra79806;Parent=Phyra79806;rank=3 scaffold_43 . CDS 259869 259944 . + 0 ID=Phyra79806;Parent=Phyra79806;rank=4 scaffold_43 . CDS 260019 260091 . + 0 ID=Phyra79806;Parent=Phyra79806;rank=5 scaffold_43 . CDS 260177 260341 . + 0 ID=Phyra79806;Parent=Phyra79806;rank=6 scaffold_43 . CDS 260416 260479 . + 0 ID=Phyra79806;Parent=Phyra79806;rank=7 scaffold_43 . CDS 260558 260729 . + 0 ID=Phyra79806;Parent=Phyra79806;rank=8 scaffold_43 . CDS 260778 261032 . + 0 ID=Phyra79806;Parent=Phyra79806;rank=9 scaffold_43 . CDS 261112 261312 . + 0 ID=Phyra79806;Parent=Phyra79806;rank=10 scaffold_43 . CDS 261385 261483 . + 0 ID=Phyra79806;Parent=Phyra79806;rank=11 scaffold_43 . CDS 261737 261800 . + 0 ID=Phyra79806;Parent=Phyra79806;rank=12 scaffold_43 . CDS 261874 262088 . + 0 ID=Phyra79806;Parent=Phyra79806;rank=13 scaffold_43 ensembl protein_coding_gene 255003 256961 . + . ID=Phyra95500;biotype=protein_coding;external_name=C_scaffold_43000039;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 255003 256961 . + . ID=Phyra95500;Parent=Phyra95500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 255003 255232 . + 0 ID=Phyra95500;Parent=Phyra95500;rank=1 scaffold_43 . exon 255003 255232 . + . ID=Phyra95500.1;Parent=Phyra95500;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 255491 256961 . + 0 ID=Phyra95500;Parent=Phyra95500;rank=2 scaffold_43 . exon 255491 256961 . + . ID=Phyra95500.2;Parent=Phyra95500;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 ensembl protein_coding_gene 257083 258630 . - . ID=Phyra95501;biotype=protein_coding;external_name=C_scaffold_43000040;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 257083 258630 . - . ID=Phyra95501;Parent=Phyra95501;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 257083 257146 . - 0 ID=Phyra95501;Parent=Phyra95501;rank=8 scaffold_43 . exon 257083 257146 . - . ID=Phyra95501.8;Parent=Phyra95501;constitutive=1;ensembl_phase=2;rank=8 scaffold_43 . CDS 257221 257357 . - 0 ID=Phyra95501;Parent=Phyra95501;rank=7 scaffold_43 . exon 257221 257357 . - . ID=Phyra95501.7;Parent=Phyra95501;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_43 . CDS 257440 257524 . - 0 ID=Phyra95501;Parent=Phyra95501;rank=6 scaffold_43 . exon 257440 257524 . - . ID=Phyra95501.6;Parent=Phyra95501;constitutive=1;ensembl_phase=2;rank=6 scaffold_43 . CDS 257595 257741 . - 0 ID=Phyra95501;Parent=Phyra95501;rank=5 scaffold_43 . exon 257595 257741 . - . ID=Phyra95501.5;Parent=Phyra95501;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_43 . CDS 257812 257933 . - 0 ID=Phyra95501;Parent=Phyra95501;rank=4 scaffold_43 . exon 257812 257933 . - . ID=Phyra95501.4;Parent=Phyra95501;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_43 . CDS 258011 258096 . - 0 ID=Phyra95501;Parent=Phyra95501;rank=3 scaffold_43 . exon 258011 258096 . - . ID=Phyra95501.3;Parent=Phyra95501;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 258167 258263 . - 0 ID=Phyra95501;Parent=Phyra95501;rank=2 scaffold_43 . exon 258167 258263 . - . ID=Phyra95501.2;Parent=Phyra95501;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_43 . CDS 258343 258630 . - 0 ID=Phyra95501;Parent=Phyra95501;rank=1 scaffold_43 . exon 258343 258630 . - . ID=Phyra95501.1;Parent=Phyra95501;constitutive=1;rank=1 scaffold_43 . repeat_region 261858 261866 . ? . description=dust scaffold_43 ensembl protein_coding_gene 265360 265905 . - . ID=Phyra71739;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_43000014;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 265360 265905 . - . ID=Phyra71739;Parent=Phyra71739;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 265360 265905 . - 0 ID=Phyra71739;Parent=Phyra71739;rank=1 scaffold_43 . exon 265360 265905 . - . ID=Phyra71739.1;Parent=Phyra71739;constitutive=1;rank=1 scaffold_43 . exon 259507 259610 . + . ID=Phyra79806.2;Parent=Phyra79806;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . exon 259677 259798 . + . ID=Phyra79806.3;Parent=Phyra79806;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_43 . exon 259869 259944 . + . ID=Phyra79806.4;Parent=Phyra79806;constitutive=1;ensembl_phase=2;rank=4 scaffold_43 . exon 260019 260091 . + . ID=Phyra79806.5;Parent=Phyra79806;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_43 . exon 260177 260341 . + . ID=Phyra79806.6;Parent=Phyra79806;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_43 . exon 260416 260479 . + . ID=Phyra79806.7;Parent=Phyra79806;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_43 . exon 260558 260729 . + . ID=Phyra79806.8;Parent=Phyra79806;constitutive=1;ensembl_phase=2;rank=8 scaffold_43 . exon 260778 261032 . + . ID=Phyra79806.9;Parent=Phyra79806;constitutive=1;rank=9 scaffold_43 . exon 261112 261312 . + . ID=Phyra79806.10;Parent=Phyra79806;constitutive=1;rank=10 scaffold_43 . exon 261385 261483 . + . ID=Phyra79806.11;Parent=Phyra79806;constitutive=1;rank=11 scaffold_43 . exon 261737 261800 . + . ID=Phyra79806.12;Parent=Phyra79806;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_43 . exon 261874 262088 . + . ID=Phyra79806.13;Parent=Phyra79806;constitutive=1;ensembl_phase=1;rank=13 scaffold_43 ensembl protein_coding_gene 262247 265188 . - . ID=Phyra79807;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000088;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 262247 265188 . - . ID=Phyra79807;Parent=Phyra79807;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 262247 264425 . - 0 ID=Phyra79807;Parent=Phyra79807;rank=4 scaffold_43 . exon 262247 264425 . - . ID=Phyra79807.4;Parent=Phyra79807;constitutive=1;ensembl_phase=2;rank=4 scaffold_43 . CDS 264704 264973 . - 0 ID=Phyra79807;Parent=Phyra79807;rank=3 scaffold_43 . exon 264704 264973 . - . ID=Phyra79807.3;Parent=Phyra79807;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_43 . CDS 265051 265096 . - 0 ID=Phyra79807;Parent=Phyra79807;rank=2 scaffold_43 . exon 265051 265096 . - . ID=Phyra79807.2;Parent=Phyra79807;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_43 . CDS 265173 265188 . - 0 ID=Phyra79807;Parent=Phyra79807;rank=1 scaffold_43 . exon 265173 265188 . - . ID=Phyra79807.1;Parent=Phyra79807;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 266008 266808 . - . ID=Phyra79809;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000090;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 266008 266808 . - . ID=Phyra79809;Parent=Phyra79809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 266008 266808 . - 0 ID=Phyra79809;Parent=Phyra79809;rank=1 scaffold_43 . exon 266008 266808 . - . ID=Phyra79809.1;Parent=Phyra79809;constitutive=1;rank=1 scaffold_43 . repeat_region 270456 270498 . ? . description=trf scaffold_43 . repeat_region 273486 273559 . ? . description=trf scaffold_43 . repeat_region 273486 273573 . ? . description=trf scaffold_43 . biological_region 274624 274625 0.999 + . logic_name=eponine scaffold_43 ensembl protein_coding_gene 277569 278480 . + . ID=Phyra71741;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_43000016;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 277569 278480 . + . ID=Phyra71741;Parent=Phyra71741;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 277569 277695 . + 0 ID=Phyra71741;Parent=Phyra71741;rank=1 scaffold_43 . exon 277569 277695 . + . ID=Phyra71741.1;Parent=Phyra71741;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 277824 277901 . + 0 ID=Phyra71741;Parent=Phyra71741;rank=2 scaffold_43 . exon 277824 277901 . + . ID=Phyra71741.2;Parent=Phyra71741;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 277995 278071 . + 0 ID=Phyra71741;Parent=Phyra71741;rank=3 scaffold_43 . exon 277995 278071 . + . ID=Phyra71741.3;Parent=Phyra71741;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 278169 278480 . + 0 ID=Phyra71741;Parent=Phyra71741;rank=4 scaffold_43 . exon 278169 278480 . + . ID=Phyra71741.4;Parent=Phyra71741;constitutive=1;rank=4 scaffold_43 ensembl protein_coding_gene 279112 279666 . - . ID=Phyra79813;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000094;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 279112 279666 . - . ID=Phyra79813;Parent=Phyra79813;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 279112 279423 . - 0 ID=Phyra79813;Parent=Phyra79813;rank=2 scaffold_43 . exon 279112 279423 . - . ID=Phyra79813.2;Parent=Phyra79813;constitutive=1;rank=2 scaffold_43 . CDS 279505 279666 . - 0 ID=Phyra79813;Parent=Phyra79813;rank=1 scaffold_43 ensembl protein_coding_gene 274439 275908 . - . ID=Phyra95502;biotype=protein_coding;external_name=C_scaffold_43000041;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 274439 275908 . - . ID=Phyra95502;Parent=Phyra95502;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 274439 274846 . - 0 ID=Phyra95502;Parent=Phyra95502;rank=5 scaffold_43 . exon 274439 274846 . - . ID=Phyra95502.5;Parent=Phyra95502;constitutive=1;rank=5 scaffold_43 . CDS 274914 275057 . - 0 ID=Phyra95502;Parent=Phyra95502;rank=4 scaffold_43 . exon 274914 275057 . - . ID=Phyra95502.4;Parent=Phyra95502;constitutive=1;rank=4 scaffold_43 . CDS 275130 275289 . - 0 ID=Phyra95502;Parent=Phyra95502;rank=3 scaffold_43 . exon 275130 275289 . - . ID=Phyra95502.3;Parent=Phyra95502;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 275369 275624 . - 0 ID=Phyra95502;Parent=Phyra95502;rank=2 scaffold_43 . exon 275369 275624 . - . ID=Phyra95502.2;Parent=Phyra95502;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_43 . CDS 275710 275908 . - 0 ID=Phyra95502;Parent=Phyra95502;rank=1 scaffold_43 . exon 275710 275908 . - . ID=Phyra95502.1;Parent=Phyra95502;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 276203 277075 . + . ID=Phyra95503;biotype=protein_coding;external_name=C_scaffold_43000042;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 276203 277075 . + . ID=Phyra95503;Parent=Phyra95503;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 276203 276237 . + 0 ID=Phyra95503;Parent=Phyra95503;rank=1 scaffold_43 . exon 276203 276237 . + . ID=Phyra95503.1;Parent=Phyra95503;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 276331 276449 . + 0 ID=Phyra95503;Parent=Phyra95503;rank=2 scaffold_43 . exon 276331 276449 . + . ID=Phyra95503.2;Parent=Phyra95503;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 276551 276614 . + 0 ID=Phyra95503;Parent=Phyra95503;rank=3 scaffold_43 . exon 276551 276614 . + . ID=Phyra95503.3;Parent=Phyra95503;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_43 . CDS 276688 276775 . + 0 ID=Phyra95503;Parent=Phyra95503;rank=4 scaffold_43 . exon 276688 276775 . + . ID=Phyra95503.4;Parent=Phyra95503;constitutive=1;ensembl_phase=2;rank=4 scaffold_43 . CDS 276852 276977 . + 0 ID=Phyra95503;Parent=Phyra95503;rank=5 scaffold_43 . exon 276852 276977 . + . ID=Phyra95503.5;Parent=Phyra95503;constitutive=1;rank=5 scaffold_43 . CDS 277058 277075 . + 0 ID=Phyra95503;Parent=Phyra95503;rank=6 scaffold_43 . exon 277058 277075 . + . ID=Phyra95503.6;Parent=Phyra95503;constitutive=1;rank=6 scaffold_43 ensembl protein_coding_gene 288876 292610 . - . ID=Phyra71742;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_43000017;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 288876 292610 . - . ID=Phyra71742;Parent=Phyra71742;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 288876 290024 . - 0 ID=Phyra71742;Parent=Phyra71742;rank=2 scaffold_43 . exon 288876 290024 . - . ID=Phyra71742.2;Parent=Phyra71742;constitutive=1;rank=2 scaffold_43 . CDS 290142 292610 . - 0 ID=Phyra71742;Parent=Phyra71742;rank=1 scaffold_43 . exon 279505 279666 . - . ID=Phyra79813.1;Parent=Phyra79813;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 287595 288618 . - . ID=Phyra79815;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000096;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 287595 288618 . - . ID=Phyra79815;Parent=Phyra79815;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 287595 287634 . - 0 ID=Phyra79815;Parent=Phyra79815;rank=3 scaffold_43 . exon 287595 287634 . - . ID=Phyra79815.3;Parent=Phyra79815;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 287799 288143 . - 0 ID=Phyra79815;Parent=Phyra79815;rank=2 scaffold_43 . exon 287799 288143 . - . ID=Phyra79815.2;Parent=Phyra79815;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_43 . CDS 288215 288618 . - 0 ID=Phyra79815;Parent=Phyra79815;rank=1 scaffold_43 . exon 288215 288618 . - . ID=Phyra79815.1;Parent=Phyra79815;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 281209 285797 . + . ID=Phyra95506;biotype=protein_coding;external_name=C_scaffold_43000045;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 281209 285797 . + . ID=Phyra95506;Parent=Phyra95506;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 281209 281535 . + 0 ID=Phyra95506;Parent=Phyra95506;rank=1 scaffold_43 . exon 281209 281535 . + . ID=Phyra95506.1;Parent=Phyra95506;constitutive=1;rank=1 scaffold_43 . CDS 281575 282162 . + 0 ID=Phyra95506;Parent=Phyra95506;rank=2 scaffold_43 . exon 281575 282162 . + . ID=Phyra95506.2;Parent=Phyra95506;constitutive=1;rank=2 scaffold_43 . CDS 282205 282762 . + 0 ID=Phyra95506;Parent=Phyra95506;rank=3 scaffold_43 . exon 282205 282762 . + . ID=Phyra95506.3;Parent=Phyra95506;constitutive=1;rank=3 scaffold_43 . CDS 282886 283542 . + 0 ID=Phyra95506;Parent=Phyra95506;rank=4 scaffold_43 . exon 282886 283542 . + . ID=Phyra95506.4;Parent=Phyra95506;constitutive=1;rank=4 scaffold_43 . CDS 283567 283675 . + 0 ID=Phyra95506;Parent=Phyra95506;rank=5 scaffold_43 . exon 283567 283675 . + . ID=Phyra95506.5;Parent=Phyra95506;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_43 . CDS 283886 284146 . + 0 ID=Phyra95506;Parent=Phyra95506;rank=6 scaffold_43 . exon 283886 284146 . + . ID=Phyra95506.6;Parent=Phyra95506;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_43 . CDS 284351 284428 . + 0 ID=Phyra95506;Parent=Phyra95506;rank=7 scaffold_43 . exon 284351 284428 . + . ID=Phyra95506.7;Parent=Phyra95506;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_43 . CDS 284606 285355 . + 0 ID=Phyra95506;Parent=Phyra95506;rank=8 scaffold_43 . exon 284606 285355 . + . ID=Phyra95506.8;Parent=Phyra95506;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_43 . CDS 285664 285797 . + 0 ID=Phyra95506;Parent=Phyra95506;rank=9 scaffold_43 . exon 285664 285797 . + . ID=Phyra95506.9;Parent=Phyra95506;constitutive=1;ensembl_phase=1;rank=9 scaffold_43 . biological_region 290073 290074 0.999 - . logic_name=eponine scaffold_43 . biological_region 291583 291588 0.999 - . logic_name=eponine scaffold_43 . biological_region 293479 293480 0.999 - . logic_name=eponine scaffold_43 . biological_region 293532 293533 0.999 + . logic_name=eponine scaffold_43 . biological_region 293871 293874 0.999 - . logic_name=eponine scaffold_43 . biological_region 296112 296112 0.999 + . logic_name=eponine scaffold_43 . biological_region 296285 296287 0.999 - . logic_name=eponine scaffold_43 . biological_region 296340 296345 0.999 + . logic_name=eponine scaffold_43 . exon 290142 292610 . - . ID=Phyra71742.1;Parent=Phyra71742;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 292952 293639 . + . ID=Phyra79817;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000098;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 292952 293639 . + . ID=Phyra79817;Parent=Phyra79817;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 292952 293101 . + 0 ID=Phyra79817;Parent=Phyra79817;rank=1 scaffold_43 . exon 292952 293101 . + . ID=Phyra79817.1;Parent=Phyra79817;constitutive=1;rank=1 scaffold_43 . CDS 293178 293249 . + 0 ID=Phyra79817;Parent=Phyra79817;rank=2 scaffold_43 . exon 293178 293249 . + . ID=Phyra79817.2;Parent=Phyra79817;constitutive=1;rank=2 scaffold_43 . CDS 293340 293639 . + 0 ID=Phyra79817;Parent=Phyra79817;rank=3 scaffold_43 . exon 293340 293639 . + . ID=Phyra79817.3;Parent=Phyra79817;constitutive=1;rank=3 scaffold_43 ensembl protein_coding_gene 293720 295948 . - . ID=Phyra79818;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000099;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 293720 295948 . - . ID=Phyra79818;Parent=Phyra79818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 293720 293978 . - 0 ID=Phyra79818;Parent=Phyra79818;rank=5 scaffold_43 . exon 293720 293978 . - . ID=Phyra79818.5;Parent=Phyra79818;constitutive=1;ensembl_phase=2;rank=5 scaffold_43 . CDS 294057 294168 . - 0 ID=Phyra79818;Parent=Phyra79818;rank=4 scaffold_43 . exon 294057 294168 . - . ID=Phyra79818.4;Parent=Phyra79818;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_43 . CDS 294240 294806 . - 0 ID=Phyra79818;Parent=Phyra79818;rank=3 scaffold_43 . exon 294240 294806 . - . ID=Phyra79818.3;Parent=Phyra79818;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 294855 295683 . - 0 ID=Phyra79818;Parent=Phyra79818;rank=2 scaffold_43 . exon 294855 295683 . - . ID=Phyra79818.2;Parent=Phyra79818;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_43 . CDS 295748 295948 . - 0 ID=Phyra79818;Parent=Phyra79818;rank=1 scaffold_43 . exon 295748 295948 . - . ID=Phyra79818.1;Parent=Phyra79818;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 296065 297696 . + . ID=Phyra79819;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000100;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 296065 297696 . + . ID=Phyra79819;Parent=Phyra79819;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 296065 297696 . + 0 ID=Phyra79819;Parent=Phyra79819;rank=1 scaffold_43 . exon 296065 297696 . + . ID=Phyra79819.1;Parent=Phyra79819;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 297847 299879 . + . ID=Phyra79820;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000101;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 297847 299879 . + . ID=Phyra79820;Parent=Phyra79820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 297847 298314 . + 0 ID=Phyra79820;Parent=Phyra79820;rank=1 scaffold_43 . exon 297847 298314 . + . ID=Phyra79820.1;Parent=Phyra79820;constitutive=1;rank=1 scaffold_43 . CDS 298384 298548 . + 0 ID=Phyra79820;Parent=Phyra79820;rank=2 scaffold_43 . exon 298384 298548 . + . ID=Phyra79820.2;Parent=Phyra79820;constitutive=1;rank=2 scaffold_43 . CDS 298641 298701 . + 0 ID=Phyra79820;Parent=Phyra79820;rank=3 scaffold_43 . exon 298641 298701 . + . ID=Phyra79820.3;Parent=Phyra79820;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_43 . CDS 298810 298941 . + 0 ID=Phyra79820;Parent=Phyra79820;rank=4 scaffold_43 . exon 298810 298941 . + . ID=Phyra79820.4;Parent=Phyra79820;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_43 . CDS 299269 299416 . + 0 ID=Phyra79820;Parent=Phyra79820;rank=5 scaffold_43 . CDS 299483 299562 . + 0 ID=Phyra79820;Parent=Phyra79820;rank=6 scaffold_43 . CDS 299614 299879 . + 0 ID=Phyra79820;Parent=Phyra79820;rank=7 scaffold_43 . repeat_region 299929 299936 . ? . description=dust scaffold_43 . repeat_region 301457 301514 . ? . description=dust scaffold_43 . repeat_region 305169 305176 . ? . description=dust scaffold_43 . exon 299269 299416 . + . ID=Phyra79820.5;Parent=Phyra79820;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_43 . exon 299483 299562 . + . ID=Phyra79820.6;Parent=Phyra79820;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_43 . exon 299614 299879 . + . ID=Phyra79820.7;Parent=Phyra79820;constitutive=1;ensembl_phase=1;rank=7 scaffold_43 ensembl protein_coding_gene 300002 301337 . - . ID=Phyra79821;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000102;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 300002 301337 . - . ID=Phyra79821;Parent=Phyra79821;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 300002 300183 . - 0 ID=Phyra79821;Parent=Phyra79821;rank=6 scaffold_43 . exon 300002 300183 . - . ID=Phyra79821.6;Parent=Phyra79821;constitutive=1;ensembl_phase=1;rank=6 scaffold_43 . CDS 300271 300370 . - 0 ID=Phyra79821;Parent=Phyra79821;rank=5 scaffold_43 . exon 300271 300370 . - . ID=Phyra79821.5;Parent=Phyra79821;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_43 . CDS 300458 300567 . - 0 ID=Phyra79821;Parent=Phyra79821;rank=4 scaffold_43 . exon 300458 300567 . - . ID=Phyra79821.4;Parent=Phyra79821;constitutive=1;ensembl_phase=1;rank=4 scaffold_43 . CDS 300607 300947 . - 0 ID=Phyra79821;Parent=Phyra79821;rank=3 scaffold_43 . exon 300607 300947 . - . ID=Phyra79821.3;Parent=Phyra79821;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 301016 301127 . - 0 ID=Phyra79821;Parent=Phyra79821;rank=2 scaffold_43 . exon 301016 301127 . - . ID=Phyra79821.2;Parent=Phyra79821;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_43 . CDS 301193 301337 . - 0 ID=Phyra79821;Parent=Phyra79821;rank=1 scaffold_43 . exon 301193 301337 . - . ID=Phyra79821.1;Parent=Phyra79821;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 303321 304502 . + . ID=Phyra79822;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000103;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 303321 304502 . + . ID=Phyra79822;Parent=Phyra79822;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 303321 304502 . + 0 ID=Phyra79822;Parent=Phyra79822;rank=1 scaffold_43 . exon 303321 304502 . + . ID=Phyra79822.1;Parent=Phyra79822;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 307327 308333 . + . ID=Phyra79824;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000105;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 307327 308333 . + . ID=Phyra79824;Parent=Phyra79824;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 307327 307475 . + 0 ID=Phyra79824;Parent=Phyra79824;rank=1 scaffold_43 . exon 307327 307475 . + . ID=Phyra79824.1;Parent=Phyra79824;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 307542 307630 . + 0 ID=Phyra79824;Parent=Phyra79824;rank=2 scaffold_43 . exon 307542 307630 . + . ID=Phyra79824.2;Parent=Phyra79824;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 307695 307933 . + 0 ID=Phyra79824;Parent=Phyra79824;rank=3 scaffold_43 . exon 307695 307933 . + . ID=Phyra79824.3;Parent=Phyra79824;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 308004 308160 . + 0 ID=Phyra79824;Parent=Phyra79824;rank=4 scaffold_43 . exon 308004 308160 . + . ID=Phyra79824.4;Parent=Phyra79824;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_43 . CDS 308242 308333 . + 0 ID=Phyra79824;Parent=Phyra79824;rank=5 scaffold_43 . exon 308242 308333 . + . ID=Phyra79824.5;Parent=Phyra79824;constitutive=1;ensembl_phase=1;rank=5 scaffold_43 ensembl protein_coding_gene 304563 306445 . - . ID=Phyra95511;biotype=protein_coding;external_name=C_scaffold_43000050;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 304563 306445 . - . ID=Phyra95511;Parent=Phyra95511;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 304563 304706 . - 0 ID=Phyra95511;Parent=Phyra95511;rank=11 scaffold_43 . exon 304563 304706 . - . ID=Phyra95511.11;Parent=Phyra95511;constitutive=1;rank=11 scaffold_43 . CDS 304767 304919 . - 0 ID=Phyra95511;Parent=Phyra95511;rank=10 scaffold_43 . exon 304767 304919 . - . ID=Phyra95511.10;Parent=Phyra95511;constitutive=1;rank=10 scaffold_43 . CDS 304980 305126 . - 0 ID=Phyra95511;Parent=Phyra95511;rank=9 scaffold_43 . exon 304980 305126 . - . ID=Phyra95511.9;Parent=Phyra95511;constitutive=1;rank=9 scaffold_43 . CDS 305207 305275 . - 0 ID=Phyra95511;Parent=Phyra95511;rank=8 scaffold_43 . exon 305207 305275 . - . ID=Phyra95511.8;Parent=Phyra95511;constitutive=1;rank=8 scaffold_43 . CDS 305341 305388 . - 0 ID=Phyra95511;Parent=Phyra95511;rank=7 scaffold_43 . exon 305341 305388 . - . ID=Phyra95511.7;Parent=Phyra95511;constitutive=1;rank=7 scaffold_43 . CDS 305478 305651 . - 0 ID=Phyra95511;Parent=Phyra95511;rank=6 scaffold_43 . exon 305478 305651 . - . ID=Phyra95511.6;Parent=Phyra95511;constitutive=1;rank=6 scaffold_43 . CDS 305720 305884 . - 0 ID=Phyra95511;Parent=Phyra95511;rank=5 scaffold_43 . exon 305720 305884 . - . ID=Phyra95511.5;Parent=Phyra95511;constitutive=1;rank=5 scaffold_43 . CDS 305952 306023 . - 0 ID=Phyra95511;Parent=Phyra95511;rank=4 scaffold_43 . exon 305952 306023 . - . ID=Phyra95511.4;Parent=Phyra95511;constitutive=1;rank=4 scaffold_43 . CDS 306095 306189 . - 0 ID=Phyra95511;Parent=Phyra95511;rank=3 scaffold_43 . exon 306095 306189 . - . ID=Phyra95511.3;Parent=Phyra95511;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 306258 306354 . - 0 ID=Phyra95511;Parent=Phyra95511;rank=2 scaffold_43 . exon 306258 306354 . - . ID=Phyra95511.2;Parent=Phyra95511;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_43 . CDS 306428 306445 . - 0 ID=Phyra95511;Parent=Phyra95511;rank=1 scaffold_43 . exon 306428 306445 . - . ID=Phyra95511.1;Parent=Phyra95511;constitutive=1;rank=1 scaffold_43 . repeat_region 318902 318950 . ? . description=trf scaffold_43 ensembl protein_coding_gene 309529 310323 . - . ID=Phyra79825;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000106;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 309529 310323 . - . ID=Phyra79825;Parent=Phyra79825;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 309529 309570 . - 0 ID=Phyra79825;Parent=Phyra79825;rank=4 scaffold_43 . exon 309529 309570 . - . ID=Phyra79825.4;Parent=Phyra79825;constitutive=1;rank=4 scaffold_43 . CDS 309672 309870 . - 0 ID=Phyra79825;Parent=Phyra79825;rank=3 scaffold_43 . exon 309672 309870 . - . ID=Phyra79825.3;Parent=Phyra79825;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 309933 310101 . - 0 ID=Phyra79825;Parent=Phyra79825;rank=2 scaffold_43 . exon 309933 310101 . - . ID=Phyra79825.2;Parent=Phyra79825;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_43 . CDS 310146 310323 . - 0 ID=Phyra79825;Parent=Phyra79825;rank=1 scaffold_43 . exon 310146 310323 . - . ID=Phyra79825.1;Parent=Phyra79825;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 317958 318692 . - . ID=Phyra79828;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000109;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 317958 318692 . - . ID=Phyra79828;Parent=Phyra79828;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 317958 318010 . - 0 ID=Phyra79828;Parent=Phyra79828;rank=3 scaffold_43 . exon 317958 318010 . - . ID=Phyra79828.3;Parent=Phyra79828;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 318045 318443 . - 0 ID=Phyra79828;Parent=Phyra79828;rank=2 scaffold_43 . exon 318045 318443 . - . ID=Phyra79828.2;Parent=Phyra79828;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 318518 318692 . - 0 ID=Phyra79828;Parent=Phyra79828;rank=1 scaffold_43 . exon 318518 318692 . - . ID=Phyra79828.1;Parent=Phyra79828;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 311682 314511 . + . ID=Phyra95512;biotype=protein_coding;external_name=C_scaffold_43000051;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 311682 314511 . + . ID=Phyra95512;Parent=Phyra95512;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 311682 311684 . + 0 ID=Phyra95512;Parent=Phyra95512;rank=1 scaffold_43 . exon 311682 311684 . + . ID=Phyra95512.1;Parent=Phyra95512;constitutive=1;rank=1 scaffold_43 . CDS 311763 311870 . + 0 ID=Phyra95512;Parent=Phyra95512;rank=2 scaffold_43 . exon 311763 311870 . + . ID=Phyra95512.2;Parent=Phyra95512;constitutive=1;rank=2 scaffold_43 . CDS 311939 312046 . + 0 ID=Phyra95512;Parent=Phyra95512;rank=3 scaffold_43 . exon 311939 312046 . + . ID=Phyra95512.3;Parent=Phyra95512;constitutive=1;rank=3 scaffold_43 . CDS 312111 312218 . + 0 ID=Phyra95512;Parent=Phyra95512;rank=4 scaffold_43 . exon 312111 312218 . + . ID=Phyra95512.4;Parent=Phyra95512;constitutive=1;rank=4 scaffold_43 . CDS 312652 312767 . + 0 ID=Phyra95512;Parent=Phyra95512;rank=5 scaffold_43 . exon 312652 312767 . + . ID=Phyra95512.5;Parent=Phyra95512;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_43 . CDS 312841 312958 . + 0 ID=Phyra95512;Parent=Phyra95512;rank=6 scaffold_43 . exon 312841 312958 . + . ID=Phyra95512.6;Parent=Phyra95512;constitutive=1;ensembl_phase=2;rank=6 scaffold_43 . CDS 313102 313311 . + 0 ID=Phyra95512;Parent=Phyra95512;rank=7 scaffold_43 . exon 313102 313311 . + . ID=Phyra95512.7;Parent=Phyra95512;constitutive=1;rank=7 scaffold_43 . CDS 313655 313885 . + 0 ID=Phyra95512;Parent=Phyra95512;rank=8 scaffold_43 . exon 313655 313885 . + . ID=Phyra95512.8;Parent=Phyra95512;constitutive=1;rank=8 scaffold_43 . CDS 313954 314133 . + 0 ID=Phyra95512;Parent=Phyra95512;rank=9 scaffold_43 . exon 313954 314133 . + . ID=Phyra95512.9;Parent=Phyra95512;constitutive=1;rank=9 scaffold_43 . CDS 314191 314511 . + 0 ID=Phyra95512;Parent=Phyra95512;rank=10 scaffold_43 . exon 314191 314511 . + . ID=Phyra95512.10;Parent=Phyra95512;constitutive=1;rank=10 scaffold_43 ensembl protein_coding_gene 314903 315844 . + . ID=Phyra95515;biotype=protein_coding;external_name=C_scaffold_43000054;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 314903 315844 . + . ID=Phyra95515;Parent=Phyra95515;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 314903 315068 . + 0 ID=Phyra95515;Parent=Phyra95515;rank=1 scaffold_43 . exon 314903 315068 . + . ID=Phyra95515.1;Parent=Phyra95515;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 315132 315440 . + 0 ID=Phyra95515;Parent=Phyra95515;rank=2 scaffold_43 . exon 315132 315440 . + . ID=Phyra95515.2;Parent=Phyra95515;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 315543 315844 . + 0 ID=Phyra95515;Parent=Phyra95515;rank=3 scaffold_43 . exon 315543 315844 . + . ID=Phyra95515.3;Parent=Phyra95515;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . biological_region 319317 319320 0.999 - . logic_name=eponine scaffold_43 ensembl protein_coding_gene 320491 322356 . + . ID=Phyra95517;biotype=protein_coding;external_name=C_scaffold_43000056;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 320491 322356 . + . ID=Phyra95517;Parent=Phyra95517;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 320491 320839 . + 0 ID=Phyra95517;Parent=Phyra95517;rank=1 scaffold_43 . exon 320491 320839 . + . ID=Phyra95517.1;Parent=Phyra95517;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 320945 322356 . + 0 ID=Phyra95517;Parent=Phyra95517;rank=2 scaffold_43 . exon 320945 322356 . + . ID=Phyra95517.2;Parent=Phyra95517;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 ensembl protein_coding_gene 322511 323662 . - . ID=Phyra95518;biotype=protein_coding;external_name=C_scaffold_43000057;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 322511 323662 . - . ID=Phyra95518;Parent=Phyra95518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 322511 323662 . - 0 ID=Phyra95518;Parent=Phyra95518;rank=1 scaffold_43 . exon 322511 323662 . - . ID=Phyra95518.1;Parent=Phyra95518;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 325213 326051 . - . ID=Phyra95519;biotype=protein_coding;external_name=C_scaffold_43000058;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 325213 326051 . - . ID=Phyra95519;Parent=Phyra95519;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 325213 325260 . - 0 ID=Phyra95519;Parent=Phyra95519;rank=3 scaffold_43 . exon 325213 325260 . - . ID=Phyra95519.3;Parent=Phyra95519;constitutive=1;rank=3 scaffold_43 . CDS 325388 325621 . - 0 ID=Phyra95519;Parent=Phyra95519;rank=2 scaffold_43 . exon 325388 325621 . - . ID=Phyra95519.2;Parent=Phyra95519;constitutive=1;rank=2 scaffold_43 . CDS 325793 326050 . - 0 ID=Phyra95519;Parent=Phyra95519;rank=1 scaffold_43 . exon 325793 326051 . - . ID=Phyra95519.1;Parent=Phyra95519;constitutive=1;ensembl_phase=-1;rank=1 scaffold_43 ensembl protein_coding_gene 326863 330105 . - . ID=Phyra95520;biotype=protein_coding;external_name=C_scaffold_43000059;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 326863 330105 . - . ID=Phyra95520;Parent=Phyra95520;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 326863 327979 . - 0 ID=Phyra95520;Parent=Phyra95520;rank=5 scaffold_43 . exon 326863 327979 . - . ID=Phyra95520.5;Parent=Phyra95520;constitutive=1;ensembl_phase=2;rank=5 scaffold_43 . CDS 328082 328810 . - 0 ID=Phyra95520;Parent=Phyra95520;rank=4 scaffold_43 . exon 328082 328810 . - . ID=Phyra95520.4;Parent=Phyra95520;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_43 . CDS 329243 329411 . - 0 ID=Phyra95520;Parent=Phyra95520;rank=3 scaffold_43 . CDS 329691 329825 . - 0 ID=Phyra95520;Parent=Phyra95520;rank=2 scaffold_43 . CDS 330069 330105 . - 0 ID=Phyra95520;Parent=Phyra95520;rank=1 scaffold_43 ensembl protein_coding_gene 338371 342358 . + . ID=Phyra79834;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000115;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 338371 342358 . + . ID=Phyra79834;Parent=Phyra79834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 338371 339984 . + 0 ID=Phyra79834;Parent=Phyra79834;rank=1 scaffold_43 . exon 338371 339984 . + . ID=Phyra79834.1;Parent=Phyra79834;constitutive=1;rank=1 scaffold_43 . CDS 340119 340256 . + 0 ID=Phyra79834;Parent=Phyra79834;rank=2 scaffold_43 . CDS 340356 341811 . + 0 ID=Phyra79834;Parent=Phyra79834;rank=3 scaffold_43 . CDS 341869 341993 . + 0 ID=Phyra79834;Parent=Phyra79834;rank=4 scaffold_43 . CDS 342074 342358 . + 0 ID=Phyra79834;Parent=Phyra79834;rank=5 scaffold_43 . exon 329243 329411 . - . ID=Phyra95520.3;Parent=Phyra95520;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_43 . exon 329691 329825 . - . ID=Phyra95520.2;Parent=Phyra95520;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_43 . exon 330069 330105 . - . ID=Phyra95520.1;Parent=Phyra95520;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 330692 331172 . + . ID=Phyra95521;biotype=protein_coding;external_name=C_scaffold_43000060;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 330692 331172 . + . ID=Phyra95521;Parent=Phyra95521;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 330692 330803 . + 0 ID=Phyra95521;Parent=Phyra95521;rank=1 scaffold_43 . exon 330692 330803 . + . ID=Phyra95521.1;Parent=Phyra95521;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 330883 330940 . + 0 ID=Phyra95521;Parent=Phyra95521;rank=2 scaffold_43 . exon 330883 330940 . + . ID=Phyra95521.2;Parent=Phyra95521;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_43 . CDS 331014 331138 . + 0 ID=Phyra95521;Parent=Phyra95521;rank=3 scaffold_43 . exon 331014 331138 . + . ID=Phyra95521.3;Parent=Phyra95521;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 331168 331172 . + 0 ID=Phyra95521;Parent=Phyra95521;rank=4 scaffold_43 . exon 331168 331172 . + . ID=Phyra95521.4;Parent=Phyra95521;constitutive=1;ensembl_phase=1;rank=4 scaffold_43 ensembl protein_coding_gene 332682 334784 . - . ID=Phyra95522;biotype=protein_coding;external_name=C_scaffold_43000061;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 332682 334784 . - . ID=Phyra95522;Parent=Phyra95522;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 332682 332795 . - 0 ID=Phyra95522;Parent=Phyra95522;rank=10 scaffold_43 . exon 332682 332795 . - . ID=Phyra95522.10;Parent=Phyra95522;constitutive=1;rank=10 scaffold_43 . CDS 332871 332968 . - 0 ID=Phyra95522;Parent=Phyra95522;rank=9 scaffold_43 . exon 332871 332968 . - . ID=Phyra95522.9;Parent=Phyra95522;constitutive=1;ensembl_phase=1;rank=9 scaffold_43 . CDS 333042 333042 . - 0 ID=Phyra95522;Parent=Phyra95522;rank=8 scaffold_43 . exon 333042 333042 . - . ID=Phyra95522.8;Parent=Phyra95522;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_43 . CDS 333375 333550 . - 0 ID=Phyra95522;Parent=Phyra95522;rank=7 scaffold_43 . exon 333375 333550 . - . ID=Phyra95522.7;Parent=Phyra95522;constitutive=1;ensembl_phase=1;rank=7 scaffold_43 . CDS 333632 333722 . - 0 ID=Phyra95522;Parent=Phyra95522;rank=6 scaffold_43 . exon 333632 333722 . - . ID=Phyra95522.6;Parent=Phyra95522;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_43 . CDS 333744 333951 . - 0 ID=Phyra95522;Parent=Phyra95522;rank=5 scaffold_43 . exon 333744 333951 . - . ID=Phyra95522.5;Parent=Phyra95522;constitutive=1;ensembl_phase=2;rank=5 scaffold_43 . CDS 334016 334207 . - 0 ID=Phyra95522;Parent=Phyra95522;rank=4 scaffold_43 . exon 334016 334207 . - . ID=Phyra95522.4;Parent=Phyra95522;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_43 . CDS 334278 334364 . - 0 ID=Phyra95522;Parent=Phyra95522;rank=3 scaffold_43 . exon 334278 334364 . - . ID=Phyra95522.3;Parent=Phyra95522;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_43 . CDS 334407 334491 . - 0 ID=Phyra95522;Parent=Phyra95522;rank=2 scaffold_43 . exon 334407 334491 . - . ID=Phyra95522.2;Parent=Phyra95522;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_43 . CDS 334565 334784 . - 0 ID=Phyra95522;Parent=Phyra95522;rank=1 scaffold_43 . exon 334565 334784 . - . ID=Phyra95522.1;Parent=Phyra95522;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 335421 336525 . + . ID=Phyra95523;biotype=protein_coding;external_name=C_scaffold_43000062;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 335421 336525 . + . ID=Phyra95523;Parent=Phyra95523;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 335421 335855 . + 0 ID=Phyra95523;Parent=Phyra95523;rank=1 scaffold_43 . exon 335421 335855 . + . ID=Phyra95523.1;Parent=Phyra95523;constitutive=1;rank=1 scaffold_43 . CDS 335928 336155 . + 0 ID=Phyra95523;Parent=Phyra95523;rank=2 scaffold_43 . exon 335928 336155 . + . ID=Phyra95523.2;Parent=Phyra95523;constitutive=1;rank=2 scaffold_43 . CDS 336237 336525 . + 0 ID=Phyra95523;Parent=Phyra95523;rank=3 scaffold_43 . exon 336237 336525 . + . ID=Phyra95523.3;Parent=Phyra95523;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_43 . repeat_region 342748 342901 . ? . description=dust scaffold_43 . biological_region 345141 345148 0.999 + . logic_name=eponine scaffold_43 . biological_region 345707 345710 0.999 - . logic_name=eponine scaffold_43 . biological_region 346157 346159 0.999 + . logic_name=eponine scaffold_43 . exon 340119 340256 . + . ID=Phyra79834.2;Parent=Phyra79834;constitutive=1;rank=2 scaffold_43 . exon 340356 341811 . + . ID=Phyra79834.3;Parent=Phyra79834;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_43 . exon 341869 341993 . + . ID=Phyra79834.4;Parent=Phyra79834;constitutive=1;ensembl_phase=1;rank=4 scaffold_43 . exon 342074 342358 . + . ID=Phyra79834.5;Parent=Phyra79834;constitutive=1;rank=5 scaffold_43 ensembl protein_coding_gene 345085 347732 . + . ID=Phyra79836;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000117;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 345085 347732 . + . ID=Phyra79836;Parent=Phyra79836;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 345085 345298 . + 0 ID=Phyra79836;Parent=Phyra79836;rank=1 scaffold_43 . exon 345085 345298 . + . ID=Phyra79836.1;Parent=Phyra79836;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 345366 345463 . + 0 ID=Phyra79836;Parent=Phyra79836;rank=2 scaffold_43 . exon 345366 345463 . + . ID=Phyra79836.2;Parent=Phyra79836;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 345526 345698 . + 0 ID=Phyra79836;Parent=Phyra79836;rank=3 scaffold_43 . exon 345526 345698 . + . ID=Phyra79836.3;Parent=Phyra79836;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_43 . CDS 346027 346459 . + 0 ID=Phyra79836;Parent=Phyra79836;rank=4 scaffold_43 . exon 346027 346459 . + . ID=Phyra79836.4;Parent=Phyra79836;constitutive=1;ensembl_phase=2;rank=4 scaffold_43 . CDS 346519 346591 . + 0 ID=Phyra79836;Parent=Phyra79836;rank=5 scaffold_43 . exon 346519 346591 . + . ID=Phyra79836.5;Parent=Phyra79836;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_43 . CDS 346823 346861 . + 0 ID=Phyra79836;Parent=Phyra79836;rank=6 scaffold_43 . exon 346823 346861 . + . ID=Phyra79836.6;Parent=Phyra79836;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_43 . CDS 347045 347107 . + 0 ID=Phyra79836;Parent=Phyra79836;rank=7 scaffold_43 . exon 347045 347107 . + . ID=Phyra79836.7;Parent=Phyra79836;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_43 . CDS 347392 347732 . + 0 ID=Phyra79836;Parent=Phyra79836;rank=8 scaffold_43 . exon 347392 347732 . + . ID=Phyra79836.8;Parent=Phyra79836;constitutive=1;ensembl_phase=1;rank=8 scaffold_43 ensembl protein_coding_gene 348072 348937 . + . ID=Phyra79837;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000118;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 348072 348937 . + . ID=Phyra79837;Parent=Phyra79837;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 348072 348180 . + 0 ID=Phyra79837;Parent=Phyra79837;rank=1 scaffold_43 . exon 348072 348180 . + . ID=Phyra79837.1;Parent=Phyra79837;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 348240 348937 . + 0 ID=Phyra79837;Parent=Phyra79837;rank=2 scaffold_43 . exon 348240 348937 . + . ID=Phyra79837.2;Parent=Phyra79837;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 ensembl protein_coding_gene 343319 344910 . - . ID=Phyra95525;biotype=protein_coding;external_name=C_scaffold_43000064;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 343319 344910 . - . ID=Phyra95525;Parent=Phyra95525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 343319 343482 . - 0 ID=Phyra95525;Parent=Phyra95525;rank=6 scaffold_43 . exon 343319 343482 . - . ID=Phyra95525.6;Parent=Phyra95525;constitutive=1;ensembl_phase=1;rank=6 scaffold_43 . CDS 343546 343628 . - 0 ID=Phyra95525;Parent=Phyra95525;rank=5 scaffold_43 . exon 343546 343628 . - . ID=Phyra95525.5;Parent=Phyra95525;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_43 . CDS 343701 343783 . - 0 ID=Phyra95525;Parent=Phyra95525;rank=4 scaffold_43 . exon 343701 343783 . - . ID=Phyra95525.4;Parent=Phyra95525;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_43 . CDS 344162 344380 . - 0 ID=Phyra95525;Parent=Phyra95525;rank=3 scaffold_43 . exon 344162 344380 . - . ID=Phyra95525.3;Parent=Phyra95525;constitutive=1;rank=3 scaffold_43 . CDS 344460 344499 . - 0 ID=Phyra95525;Parent=Phyra95525;rank=2 scaffold_43 . exon 344460 344499 . - . ID=Phyra95525.2;Parent=Phyra95525;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 344687 344910 . - 0 ID=Phyra95525;Parent=Phyra95525;rank=1 scaffold_43 . exon 344687 344910 . - . ID=Phyra95525.1;Parent=Phyra95525;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 349201 350232 . - . ID=Phyra71743;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_43000018;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 349201 350232 . - . ID=Phyra71743;Parent=Phyra71743;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 349201 350232 . - 0 ID=Phyra71743;Parent=Phyra71743;rank=1 scaffold_43 . exon 349201 350232 . - . ID=Phyra71743.1;Parent=Phyra71743;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 353890 354980 . + . ID=Phyra79841;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000122;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 353890 354980 . + . ID=Phyra79841;Parent=Phyra79841;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 353890 354258 . + 0 ID=Phyra79841;Parent=Phyra79841;rank=1 scaffold_43 . exon 353890 354258 . + . ID=Phyra79841.1;Parent=Phyra79841;constitutive=1;rank=1 scaffold_43 . CDS 354327 354452 . + 0 ID=Phyra79841;Parent=Phyra79841;rank=2 scaffold_43 . exon 354327 354452 . + . ID=Phyra79841.2;Parent=Phyra79841;constitutive=1;rank=2 scaffold_43 . CDS 354507 354687 . + 0 ID=Phyra79841;Parent=Phyra79841;rank=3 scaffold_43 . exon 354507 354687 . + . ID=Phyra79841.3;Parent=Phyra79841;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_43 . CDS 354766 354980 . + 0 ID=Phyra79841;Parent=Phyra79841;rank=4 scaffold_43 . exon 354766 354980 . + . ID=Phyra79841.4;Parent=Phyra79841;constitutive=1;ensembl_phase=1;rank=4 scaffold_43 ensembl protein_coding_gene 355610 356845 . - . ID=Phyra79842;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000123;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 355610 356845 . - . ID=Phyra79842;Parent=Phyra79842;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 355610 356845 . - 0 ID=Phyra79842;Parent=Phyra79842;rank=1 scaffold_43 . exon 355610 356845 . - . ID=Phyra79842.1;Parent=Phyra79842;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 350725 351563 . - . ID=Phyra95535;biotype=protein_coding;external_name=C_scaffold_43000074;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 350725 351563 . - . ID=Phyra95535;Parent=Phyra95535;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 350725 350907 . - 0 ID=Phyra95535;Parent=Phyra95535;rank=4 scaffold_43 . exon 350725 350907 . - . ID=Phyra95535.4;Parent=Phyra95535;constitutive=1;rank=4 scaffold_43 . CDS 350974 351051 . - 0 ID=Phyra95535;Parent=Phyra95535;rank=3 scaffold_43 . exon 350974 351051 . - . ID=Phyra95535.3;Parent=Phyra95535;constitutive=1;rank=3 scaffold_43 . CDS 351123 351306 . - 0 ID=Phyra95535;Parent=Phyra95535;rank=2 scaffold_43 . exon 351123 351306 . - . ID=Phyra95535.2;Parent=Phyra95535;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 351553 351563 . - 0 ID=Phyra95535;Parent=Phyra95535;rank=1 scaffold_43 . exon 351553 351563 . - . ID=Phyra95535.1;Parent=Phyra95535;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 351988 353607 . + . ID=Phyra95536;biotype=protein_coding;external_name=C_scaffold_43000075;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 351988 353607 . + . ID=Phyra95536;Parent=Phyra95536;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 351988 352026 . + 0 ID=Phyra95536;Parent=Phyra95536;rank=1 scaffold_43 . exon 351988 352026 . + . ID=Phyra95536.1;Parent=Phyra95536;constitutive=1;rank=1 scaffold_43 . CDS 352123 352327 . + 0 ID=Phyra95536;Parent=Phyra95536;rank=2 scaffold_43 . exon 352123 352327 . + . ID=Phyra95536.2;Parent=Phyra95536;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_43 . CDS 352413 352609 . + 0 ID=Phyra95536;Parent=Phyra95536;rank=3 scaffold_43 . exon 352413 352609 . + . ID=Phyra95536.3;Parent=Phyra95536;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 352664 352946 . + 0 ID=Phyra95536;Parent=Phyra95536;rank=4 scaffold_43 . exon 352664 352946 . + . ID=Phyra95536.4;Parent=Phyra95536;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_43 . CDS 353028 353132 . + 0 ID=Phyra95536;Parent=Phyra95536;rank=5 scaffold_43 . exon 353028 353132 . + . ID=Phyra95536.5;Parent=Phyra95536;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_43 . CDS 353222 353607 . + 0 ID=Phyra95536;Parent=Phyra95536;rank=6 scaffold_43 . exon 353222 353607 . + . ID=Phyra95536.6;Parent=Phyra95536;constitutive=1;ensembl_phase=1;rank=6 scaffold_43 . biological_region 360805 360806 0.999 + . logic_name=eponine scaffold_43 . repeat_region 364192 364210 . ? . description=dust scaffold_43 ensembl protein_coding_gene 367569 369358 . - . ID=Phyra48919;biotype=protein_coding;external_name=gwEuk.43.65.1;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 367569 369358 . - . ID=Phyra48919;Parent=Phyra48919;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 367569 367680 . - 0 ID=Phyra48919;Parent=Phyra48919;rank=6 scaffold_43 . exon 367569 367680 . - . ID=Phyra48919.6;Parent=Phyra48919;constitutive=1;ensembl_phase=2;rank=6 scaffold_43 . CDS 367747 367934 . - 0 ID=Phyra48919;Parent=Phyra48919;rank=5 scaffold_43 . exon 367747 367934 . - . ID=Phyra48919.5;Parent=Phyra48919;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_43 . CDS 368013 368134 . - 0 ID=Phyra48919;Parent=Phyra48919;rank=4 scaffold_43 . exon 368013 368134 . - . ID=Phyra48919.4;Parent=Phyra48919;constitutive=1;ensembl_phase=1;rank=4 scaffold_43 . CDS 368190 368811 . - 0 ID=Phyra48919;Parent=Phyra48919;rank=3 scaffold_43 . exon 368190 368811 . - . ID=Phyra48919.3;Parent=Phyra48919;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_43 . CDS 368882 368994 . - 0 ID=Phyra48919;Parent=Phyra48919;rank=2 scaffold_43 . exon 368882 368994 . - . ID=Phyra48919.2;Parent=Phyra48919;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 369064 369358 . - 0 ID=Phyra48919;Parent=Phyra48919;rank=1 scaffold_43 ensembl protein_coding_gene 359787 363053 . - . ID=Phyra95538;biotype=protein_coding;external_name=C_scaffold_43000077;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 359787 363053 . - . ID=Phyra95538;Parent=Phyra95538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 359787 360376 . - 0 ID=Phyra95538;Parent=Phyra95538;rank=9 scaffold_43 . exon 359787 360376 . - . ID=Phyra95538.9;Parent=Phyra95538;constitutive=1;ensembl_phase=1;rank=9 scaffold_43 . CDS 360572 360655 . - 0 ID=Phyra95538;Parent=Phyra95538;rank=8 scaffold_43 . exon 360572 360655 . - . ID=Phyra95538.8;Parent=Phyra95538;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_43 . CDS 360701 361036 . - 0 ID=Phyra95538;Parent=Phyra95538;rank=7 scaffold_43 . exon 360701 361036 . - . ID=Phyra95538.7;Parent=Phyra95538;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_43 . CDS 361193 361274 . - 0 ID=Phyra95538;Parent=Phyra95538;rank=6 scaffold_43 . exon 361193 361274 . - . ID=Phyra95538.6;Parent=Phyra95538;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_43 . CDS 361296 361540 . - 0 ID=Phyra95538;Parent=Phyra95538;rank=5 scaffold_43 . exon 361296 361540 . - . ID=Phyra95538.5;Parent=Phyra95538;constitutive=1;ensembl_phase=1;rank=5 scaffold_43 . CDS 361682 362100 . - 0 ID=Phyra95538;Parent=Phyra95538;rank=4 scaffold_43 . exon 361682 362100 . - . ID=Phyra95538.4;Parent=Phyra95538;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_43 . CDS 362365 362560 . - 0 ID=Phyra95538;Parent=Phyra95538;rank=3 scaffold_43 . exon 362365 362560 . - . ID=Phyra95538.3;Parent=Phyra95538;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_43 . CDS 362606 362711 . - 0 ID=Phyra95538;Parent=Phyra95538;rank=2 scaffold_43 . exon 362606 362711 . - . ID=Phyra95538.2;Parent=Phyra95538;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_43 . CDS 362949 363053 . - 0 ID=Phyra95538;Parent=Phyra95538;rank=1 scaffold_43 . exon 362949 363053 . - . ID=Phyra95538.1;Parent=Phyra95538;constitutive=1;rank=1 scaffold_43 . exon 369064 369358 . - . ID=Phyra48919.1;Parent=Phyra48919;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 372005 372732 . - . ID=Phyra79845;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000126;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 372005 372732 . - . ID=Phyra79845;Parent=Phyra79845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 372005 372013 . - 0 ID=Phyra79845;Parent=Phyra79845;rank=5 scaffold_43 . exon 372005 372013 . - . ID=Phyra79845.5;Parent=Phyra79845;constitutive=1;rank=5 scaffold_43 . CDS 372056 372251 . - 0 ID=Phyra79845;Parent=Phyra79845;rank=4 scaffold_43 . exon 372056 372251 . - . ID=Phyra79845.4;Parent=Phyra79845;constitutive=1;ensembl_phase=2;rank=4 scaffold_43 . CDS 372308 372438 . - 0 ID=Phyra79845;Parent=Phyra79845;rank=3 scaffold_43 . exon 372308 372438 . - . ID=Phyra79845.3;Parent=Phyra79845;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_43 . CDS 372518 372604 . - 0 ID=Phyra79845;Parent=Phyra79845;rank=2 scaffold_43 . exon 372518 372604 . - . ID=Phyra79845.2;Parent=Phyra79845;constitutive=1;rank=2 scaffold_43 . CDS 372679 372732 . - 0 ID=Phyra79845;Parent=Phyra79845;rank=1 scaffold_43 . exon 372679 372732 . - . ID=Phyra79845.1;Parent=Phyra79845;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 373001 373802 . + . ID=Phyra79846;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000127;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 373001 373802 . + . ID=Phyra79846;Parent=Phyra79846;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 373001 373174 . + 0 ID=Phyra79846;Parent=Phyra79846;rank=1 scaffold_43 . exon 373001 373174 . + . ID=Phyra79846.1;Parent=Phyra79846;constitutive=1;rank=1 scaffold_43 . CDS 373274 373276 . + 0 ID=Phyra79846;Parent=Phyra79846;rank=2 scaffold_43 . exon 373274 373276 . + . ID=Phyra79846.2;Parent=Phyra79846;constitutive=1;rank=2 scaffold_43 . CDS 373358 373423 . + 0 ID=Phyra79846;Parent=Phyra79846;rank=3 scaffold_43 . exon 373358 373423 . + . ID=Phyra79846.3;Parent=Phyra79846;constitutive=1;rank=3 scaffold_43 . CDS 373488 373802 . + 0 ID=Phyra79846;Parent=Phyra79846;rank=4 scaffold_43 . exon 373488 373802 . + . ID=Phyra79846.4;Parent=Phyra79846;constitutive=1;rank=4 scaffold_43 ensembl protein_coding_gene 374433 376122 . - . ID=Phyra79847;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000128;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 374433 376122 . - . ID=Phyra79847;Parent=Phyra79847;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 374433 374453 . - 0 ID=Phyra79847;Parent=Phyra79847;rank=5 scaffold_43 . exon 374433 374453 . - . ID=Phyra79847.5;Parent=Phyra79847;constitutive=1;rank=5 scaffold_43 . CDS 374565 374660 . - 0 ID=Phyra79847;Parent=Phyra79847;rank=4 scaffold_43 . exon 374565 374660 . - . ID=Phyra79847.4;Parent=Phyra79847;constitutive=1;rank=4 scaffold_43 . CDS 374735 374925 . - 0 ID=Phyra79847;Parent=Phyra79847;rank=3 scaffold_43 . exon 374735 374925 . - . ID=Phyra79847.3;Parent=Phyra79847;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 374999 375163 . - 0 ID=Phyra79847;Parent=Phyra79847;rank=2 scaffold_43 . exon 374999 375163 . - . ID=Phyra79847.2;Parent=Phyra79847;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 375234 376122 . - 0 ID=Phyra79847;Parent=Phyra79847;rank=1 scaffold_43 . exon 375234 376122 . - . ID=Phyra79847.1;Parent=Phyra79847;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 378507 380211 . + . ID=Phyra95539;biotype=protein_coding;external_name=C_scaffold_43000078;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 378507 380211 . + . ID=Phyra95539;Parent=Phyra95539;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 378507 378573 . + 0 ID=Phyra95539;Parent=Phyra95539;rank=1 scaffold_43 . exon 378507 378573 . + . ID=Phyra95539.1;Parent=Phyra95539;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 378680 378818 . + 0 ID=Phyra95539;Parent=Phyra95539;rank=2 scaffold_43 . exon 378680 378818 . + . ID=Phyra95539.2;Parent=Phyra95539;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_43 . CDS 378876 380011 . + 0 ID=Phyra95539;Parent=Phyra95539;rank=3 scaffold_43 . CDS 380084 380211 . + 0 ID=Phyra95539;Parent=Phyra95539;rank=4 scaffold_43 . biological_region 383267 383270 0.999 - . logic_name=eponine scaffold_43 . biological_region 385205 385208 0.999 + . logic_name=eponine scaffold_43 . biological_region 385224 385226 0.999 + . logic_name=eponine scaffold_43 ensembl protein_coding_gene 387506 388474 . + . ID=Phyra71744;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_43000019;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 387506 388474 . + . ID=Phyra71744;Parent=Phyra71744;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 387506 388474 . + 0 ID=Phyra71744;Parent=Phyra71744;rank=1 scaffold_43 . exon 387506 388474 . + . ID=Phyra71744.1;Parent=Phyra71744;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 380295 382421 . - . ID=Phyra79849;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000130;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 380295 382421 . - . ID=Phyra79849;Parent=Phyra79849;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 380295 380376 . - 0 ID=Phyra79849;Parent=Phyra79849;rank=10 scaffold_43 . exon 380295 380376 . - . ID=Phyra79849.10;Parent=Phyra79849;constitutive=1;ensembl_phase=2;rank=10 scaffold_43 . CDS 380622 380675 . - 0 ID=Phyra79849;Parent=Phyra79849;rank=9 scaffold_43 . exon 380622 380675 . - . ID=Phyra79849.9;Parent=Phyra79849;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_43 . CDS 380767 380813 . - 0 ID=Phyra79849;Parent=Phyra79849;rank=8 scaffold_43 . exon 380767 380813 . - . ID=Phyra79849.8;Parent=Phyra79849;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_43 . CDS 380924 381049 . - 0 ID=Phyra79849;Parent=Phyra79849;rank=7 scaffold_43 . exon 380924 381049 . - . ID=Phyra79849.7;Parent=Phyra79849;constitutive=1;rank=7 scaffold_43 . CDS 381114 381334 . - 0 ID=Phyra79849;Parent=Phyra79849;rank=6 scaffold_43 . exon 381114 381334 . - . ID=Phyra79849.6;Parent=Phyra79849;constitutive=1;ensembl_phase=1;rank=6 scaffold_43 . CDS 381403 381483 . - 0 ID=Phyra79849;Parent=Phyra79849;rank=5 scaffold_43 . exon 381403 381483 . - . ID=Phyra79849.5;Parent=Phyra79849;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_43 . CDS 381555 381672 . - 0 ID=Phyra79849;Parent=Phyra79849;rank=4 scaffold_43 . exon 381555 381672 . - . ID=Phyra79849.4;Parent=Phyra79849;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_43 . CDS 381744 381859 . - 0 ID=Phyra79849;Parent=Phyra79849;rank=3 scaffold_43 . exon 381744 381859 . - . ID=Phyra79849.3;Parent=Phyra79849;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 381965 382104 . - 0 ID=Phyra79849;Parent=Phyra79849;rank=2 scaffold_43 . exon 381965 382104 . - . ID=Phyra79849.2;Parent=Phyra79849;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 382165 382421 . - 0 ID=Phyra79849;Parent=Phyra79849;rank=1 scaffold_43 . exon 382165 382421 . - . ID=Phyra79849.1;Parent=Phyra79849;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 384783 385997 . - . ID=Phyra79850;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000131;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 384783 385997 . - . ID=Phyra79850;Parent=Phyra79850;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 384783 385997 . - 0 ID=Phyra79850;Parent=Phyra79850;rank=1 scaffold_43 . exon 384783 385997 . - . ID=Phyra79850.1;Parent=Phyra79850;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 388657 389946 . - . ID=Phyra79852;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000133;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 388657 389946 . - . ID=Phyra79852;Parent=Phyra79852;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 388657 389946 . - 0 ID=Phyra79852;Parent=Phyra79852;rank=1 scaffold_43 . exon 388657 389946 . - . ID=Phyra79852.1;Parent=Phyra79852;constitutive=1;rank=1 scaffold_43 . exon 378876 380011 . + . ID=Phyra95539.3;Parent=Phyra95539;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_43 . exon 380084 380211 . + . ID=Phyra95539.4;Parent=Phyra95539;constitutive=1;ensembl_phase=1;rank=4 scaffold_43 . repeat_region 390669 390697 . ? . description=trf scaffold_43 . repeat_region 390765 390814 . ? . description=dust scaffold_43 . repeat_region 391666 409173 . ? . description=dust scaffold_43 . repeat_region 391666 409173 . ? . description=dust scaffold_43 . repeat_region 410113 413350 . ? . description=dust scaffold_43 . biological_region 414834 414837 0.999 - . logic_name=eponine scaffold_43 . biological_region 415242 415249 0.999 + . logic_name=eponine scaffold_43 . biological_region 415260 415262 0.999 - . logic_name=eponine scaffold_43 . repeat_region 417715 417730 . ? . description=dust scaffold_43 . biological_region 418450 418453 0.999 + . logic_name=eponine scaffold_43 ensembl protein_coding_gene 409497 409958 . + . ID=Phyra79853;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_43000134;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 409497 409958 . + . ID=Phyra79853;Parent=Phyra79853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 409497 409958 . + 0 ID=Phyra79853;Parent=Phyra79853;rank=1 scaffold_43 . exon 409497 409958 . + . ID=Phyra79853.1;Parent=Phyra79853;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 413455 417402 . - . ID=Phyra95541;biotype=protein_coding;external_name=C_scaffold_43000080;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 413455 417402 . - . ID=Phyra95541;Parent=Phyra95541;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 413455 413512 . - 0 ID=Phyra95541;Parent=Phyra95541;rank=7 scaffold_43 . exon 413455 413512 . - . ID=Phyra95541.7;Parent=Phyra95541;constitutive=1;ensembl_phase=2;rank=7 scaffold_43 . CDS 413568 414875 . - 0 ID=Phyra95541;Parent=Phyra95541;rank=6 scaffold_43 . exon 413568 414875 . - . ID=Phyra95541.6;Parent=Phyra95541;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_43 . CDS 414915 415087 . - 0 ID=Phyra95541;Parent=Phyra95541;rank=5 scaffold_43 . exon 414915 415087 . - . ID=Phyra95541.5;Parent=Phyra95541;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_43 . CDS 415121 415507 . - 0 ID=Phyra95541;Parent=Phyra95541;rank=4 scaffold_43 . exon 415121 415507 . - . ID=Phyra95541.4;Parent=Phyra95541;constitutive=1;rank=4 scaffold_43 . CDS 416344 416604 . - 0 ID=Phyra95541;Parent=Phyra95541;rank=3 scaffold_43 . exon 416344 416604 . - . ID=Phyra95541.3;Parent=Phyra95541;constitutive=1;rank=3 scaffold_43 . CDS 416647 417183 . - 0 ID=Phyra95541;Parent=Phyra95541;rank=2 scaffold_43 . exon 416647 417183 . - . ID=Phyra95541.2;Parent=Phyra95541;constitutive=1;rank=2 scaffold_43 . CDS 417244 417402 . - 0 ID=Phyra95541;Parent=Phyra95541;rank=1 scaffold_43 . exon 417244 417402 . - . ID=Phyra95541.1;Parent=Phyra95541;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 418148 418648 . + . ID=Phyra95542;biotype=protein_coding;external_name=C_scaffold_43000081;logic_name=jgi_phyra1 scaffold_43 ensembl transcript 418148 418648 . + . ID=Phyra95542;Parent=Phyra95542;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_43 . CDS 418148 418371 . + 0 ID=Phyra95542;Parent=Phyra95542;rank=1 scaffold_43 . exon 418148 418371 . + . ID=Phyra95542.1;Parent=Phyra95542;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 418411 418648 . + 0 ID=Phyra95542;Parent=Phyra95542;rank=2 scaffold_43 . exon 418411 418648 . + . ID=Phyra95542.2;Parent=Phyra95542;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_42 1 420019 scaffold_42 . repeat_region 1 2055 . ? . description=trf scaffold_42 . biological_region 3099 3104 0.999 + . logic_name=eponine scaffold_42 ensembl protein_coding_gene 1 3364 . + . ID=Phyra79591;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000001;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 1 3364 . + . ID=Phyra79591;Parent=Phyra79591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 1 1961 . + 0 ID=Phyra79591;Parent=Phyra79591;rank=1 scaffold_42 . exon 1 1961 . + . ID=Phyra79591.1;Parent=Phyra79591;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 2122 3364 . + 0 ID=Phyra79591;Parent=Phyra79591;rank=2 scaffold_42 . exon 2122 3364 . + . ID=Phyra79591.2;Parent=Phyra79591;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 ensembl protein_coding_gene 3546 5153 . + . ID=Phyra79592;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000002;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 3546 5153 . + . ID=Phyra79592;Parent=Phyra79592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 3546 5153 . + 0 ID=Phyra79592;Parent=Phyra79592;rank=1 scaffold_42 . exon 3546 5153 . + . ID=Phyra79592.1;Parent=Phyra79592;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 5315 6672 . - . ID=Phyra79593;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000003;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 5315 6672 . - . ID=Phyra79593;Parent=Phyra79593;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 5315 5671 . - 0 ID=Phyra79593;Parent=Phyra79593;rank=2 scaffold_42 . exon 5315 5671 . - . ID=Phyra79593.2;Parent=Phyra79593;constitutive=1;rank=2 scaffold_42 . CDS 5779 6672 . - 0 ID=Phyra79593;Parent=Phyra79593;rank=1 scaffold_42 . exon 5779 6672 . - . ID=Phyra79593.1;Parent=Phyra79593;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 6790 10197 . - . ID=Phyra79594;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000004;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 6790 10197 . - . ID=Phyra79594;Parent=Phyra79594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 6790 8765 . - 0 ID=Phyra79594;Parent=Phyra79594;rank=4 scaffold_42 . exon 6790 8765 . - . ID=Phyra79594.4;Parent=Phyra79594;constitutive=1;ensembl_phase=1;rank=4 scaffold_42 . CDS 8846 8978 . - 0 ID=Phyra79594;Parent=Phyra79594;rank=3 scaffold_42 . exon 8846 8978 . - . ID=Phyra79594.3;Parent=Phyra79594;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_42 . CDS 9037 9426 . - 0 ID=Phyra79594;Parent=Phyra79594;rank=2 scaffold_42 . exon 9037 9426 . - . ID=Phyra79594.2;Parent=Phyra79594;constitutive=1;rank=2 scaffold_42 . CDS 9490 10197 . - 0 ID=Phyra79594;Parent=Phyra79594;rank=1 scaffold_42 . exon 9490 10197 . - . ID=Phyra79594.1;Parent=Phyra79594;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 10542 12092 . + . ID=Phyra48758;biotype=protein_coding;external_name=gwEuk.42.79.1;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 10542 12092 . + . ID=Phyra48758;Parent=Phyra48758;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 10542 11953 . + 0 ID=Phyra48758;Parent=Phyra48758;rank=1 scaffold_42 . exon 10542 11953 . + . ID=Phyra48758.1;Parent=Phyra48758;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 11993 12092 . + 0 ID=Phyra48758;Parent=Phyra48758;rank=2 scaffold_42 . exon 11993 12092 . + . ID=Phyra48758.2;Parent=Phyra48758;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 ensembl protein_coding_gene 16745 17143 . - . ID=Phyra48764;biotype=protein_coding;external_name=gwEuk.42.85.1;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 16745 17143 . - . ID=Phyra48764;Parent=Phyra48764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 16745 16820 . - 0 ID=Phyra48764;Parent=Phyra48764;rank=3 scaffold_42 . exon 16745 16820 . - . ID=Phyra48764.3;Parent=Phyra48764;constitutive=1;ensembl_phase=2;rank=3 scaffold_42 . CDS 16914 16941 . - 0 ID=Phyra48764;Parent=Phyra48764;rank=2 scaffold_42 . exon 16914 16941 . - . ID=Phyra48764.2;Parent=Phyra48764;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_42 . CDS 17047 17143 . - 0 ID=Phyra48764;Parent=Phyra48764;rank=1 scaffold_42 . exon 17047 17143 . - . ID=Phyra48764.1;Parent=Phyra48764;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 ensembl protein_coding_gene 19304 20381 . + . ID=Phyra71716;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_42000002;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 19304 20381 . + . ID=Phyra71716;Parent=Phyra71716;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 19304 19442 . + 0 ID=Phyra71716;Parent=Phyra71716;rank=1 scaffold_42 . exon 19304 19442 . + . ID=Phyra71716.1;Parent=Phyra71716;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . CDS 19520 20124 . + 0 ID=Phyra71716;Parent=Phyra71716;rank=2 scaffold_42 . exon 19520 20124 . + . ID=Phyra71716.2;Parent=Phyra71716;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 20190 20381 . + 0 ID=Phyra71716;Parent=Phyra71716;rank=3 scaffold_42 ensembl protein_coding_gene 12273 12867 . - . ID=Phyra79596;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000006;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 12273 12867 . - . ID=Phyra79596;Parent=Phyra79596;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 12273 12344 . - 0 ID=Phyra79596;Parent=Phyra79596;rank=4 scaffold_42 . exon 12273 12344 . - . ID=Phyra79596.4;Parent=Phyra79596;constitutive=1;rank=4 scaffold_42 . CDS 12416 12476 . - 0 ID=Phyra79596;Parent=Phyra79596;rank=3 scaffold_42 . exon 12416 12476 . - . ID=Phyra79596.3;Parent=Phyra79596;constitutive=1;ensembl_phase=2;rank=3 scaffold_42 . CDS 12543 12738 . - 0 ID=Phyra79596;Parent=Phyra79596;rank=2 scaffold_42 . exon 12543 12738 . - . ID=Phyra79596.2;Parent=Phyra79596;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_42 . CDS 12807 12867 . - 0 ID=Phyra79596;Parent=Phyra79596;rank=1 scaffold_42 . exon 12807 12867 . - . ID=Phyra79596.1;Parent=Phyra79596;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 ensembl protein_coding_gene 14835 15930 . - . ID=Phyra79597;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000007;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 14835 15930 . - . ID=Phyra79597;Parent=Phyra79597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 14835 15537 . - 0 ID=Phyra79597;Parent=Phyra79597;rank=2 scaffold_42 . exon 14835 15537 . - . ID=Phyra79597.2;Parent=Phyra79597;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 15596 15930 . - 0 ID=Phyra79597;Parent=Phyra79597;rank=1 scaffold_42 . exon 15596 15930 . - . ID=Phyra79597.1;Parent=Phyra79597;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 16137 16475 . + . ID=Phyra79598;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000008;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 16137 16475 . + . ID=Phyra79598;Parent=Phyra79598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 16137 16475 . + 0 ID=Phyra79598;Parent=Phyra79598;rank=1 scaffold_42 . exon 16137 16475 . + . ID=Phyra79598.1;Parent=Phyra79598;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 17446 18874 . + . ID=Phyra79599;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000009;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 17446 18874 . + . ID=Phyra79599;Parent=Phyra79599;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 17446 17802 . + 0 ID=Phyra79599;Parent=Phyra79599;rank=1 scaffold_42 . exon 17446 17802 . + . ID=Phyra79599.1;Parent=Phyra79599;constitutive=1;rank=1 scaffold_42 . CDS 17892 17971 . + 0 ID=Phyra79599;Parent=Phyra79599;rank=2 scaffold_42 . exon 17892 17971 . + . ID=Phyra79599.2;Parent=Phyra79599;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_42 . CDS 18041 18178 . + 0 ID=Phyra79599;Parent=Phyra79599;rank=3 scaffold_42 . exon 18041 18178 . + . ID=Phyra79599.3;Parent=Phyra79599;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_42 . CDS 18259 18461 . + 0 ID=Phyra79599;Parent=Phyra79599;rank=4 scaffold_42 . exon 18259 18461 . + . ID=Phyra79599.4;Parent=Phyra79599;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_42 . CDS 18531 18874 . + 0 ID=Phyra79599;Parent=Phyra79599;rank=5 scaffold_42 . exon 18531 18874 . + . ID=Phyra79599.5;Parent=Phyra79599;constitutive=1;ensembl_phase=1;rank=5 scaffold_42 . biological_region 20620 20622 0.999 + . logic_name=eponine scaffold_42 . biological_region 22078 22080 0.999 + . logic_name=eponine scaffold_42 . biological_region 22168 22173 0.999 - . logic_name=eponine scaffold_42 . biological_region 26513 26514 0.999 - . logic_name=eponine scaffold_42 . repeat_region 27035 27055 . ? . description=trf scaffold_42 . biological_region 27859 27859 0.999 + . logic_name=eponine scaffold_42 . repeat_region 27871 27964 . ? . description=trf scaffold_42 . biological_region 28351 28358 0.999 - . logic_name=eponine scaffold_42 . biological_region 28458 28462 0.999 - . logic_name=eponine scaffold_42 . biological_region 28498 28501 0.999 - . logic_name=eponine scaffold_42 . biological_region 28767 28770 0.999 - . logic_name=eponine scaffold_42 ensembl protein_coding_gene 20613 21739 . - . ID=Phyra48776;biotype=protein_coding;external_name=gwEuk.42.97.1;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 20613 21739 . - . ID=Phyra48776;Parent=Phyra48776;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 20613 21278 . - 0 ID=Phyra48776;Parent=Phyra48776;rank=3 scaffold_42 . exon 20613 21278 . - . ID=Phyra48776.3;Parent=Phyra48776;constitutive=1;rank=3 scaffold_42 . CDS 21347 21558 . - 0 ID=Phyra48776;Parent=Phyra48776;rank=2 scaffold_42 . exon 21347 21558 . - . ID=Phyra48776.2;Parent=Phyra48776;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 21628 21739 . - 0 ID=Phyra48776;Parent=Phyra48776;rank=1 scaffold_42 . exon 21628 21739 . - . ID=Phyra48776.1;Parent=Phyra48776;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . exon 20190 20381 . + . ID=Phyra71716.3;Parent=Phyra71716;constitutive=1;rank=3 scaffold_42 ensembl protein_coding_gene 22005 25151 . + . ID=Phyra79602;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000012;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 22005 25151 . + . ID=Phyra79602;Parent=Phyra79602;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 22005 25151 . + 0 ID=Phyra79602;Parent=Phyra79602;rank=1 scaffold_42 . exon 22005 25151 . + . ID=Phyra79602.1;Parent=Phyra79602;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 26768 27979 . + . ID=Phyra79605;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000015;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 26768 27979 . + . ID=Phyra79605;Parent=Phyra79605;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 26768 27979 . + 0 ID=Phyra79605;Parent=Phyra79605;rank=1 scaffold_42 . exon 26768 27979 . + . ID=Phyra79605.1;Parent=Phyra79605;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 28164 29342 . + . ID=Phyra79606;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000016;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 28164 29342 . + . ID=Phyra79606;Parent=Phyra79606;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 28164 29342 . + 0 ID=Phyra79606;Parent=Phyra79606;rank=1 scaffold_42 . exon 28164 29342 . + . ID=Phyra79606.1;Parent=Phyra79606;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 25319 26548 . - . ID=Phyra95413;biotype=protein_coding;external_name=C_scaffold_42000004;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 25319 26548 . - . ID=Phyra95413;Parent=Phyra95413;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 25319 25999 . - 0 ID=Phyra95413;Parent=Phyra95413;rank=3 scaffold_42 . exon 25319 25999 . - . ID=Phyra95413.3;Parent=Phyra95413;constitutive=1;rank=3 scaffold_42 . CDS 26068 26298 . - 0 ID=Phyra95413;Parent=Phyra95413;rank=2 scaffold_42 . exon 26068 26298 . - . ID=Phyra95413.2;Parent=Phyra95413;constitutive=1;rank=2 scaffold_42 . CDS 26360 26548 . - 0 ID=Phyra95413;Parent=Phyra95413;rank=1 scaffold_42 . exon 26360 26548 . - . ID=Phyra95413.1;Parent=Phyra95413;constitutive=1;rank=1 scaffold_42 . repeat_region 30209 30295 . ? . description=dust scaffold_42 . repeat_region 38079 38086 . ? . description=dust scaffold_42 ensembl protein_coding_gene 38499 39041 . + . ID=Phyra48791;biotype=protein_coding;external_name=gwEuk.42.112.1;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 38499 39041 . + . ID=Phyra48791;Parent=Phyra48791;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 38499 38579 . + 0 ID=Phyra48791;Parent=Phyra48791;rank=1 scaffold_42 . exon 38499 38579 . + . ID=Phyra48791.1;Parent=Phyra48791;constitutive=1;rank=1 scaffold_42 . CDS 38689 38832 . + 0 ID=Phyra48791;Parent=Phyra48791;rank=2 scaffold_42 . exon 38689 38832 . + . ID=Phyra48791.2;Parent=Phyra48791;constitutive=1;rank=2 scaffold_42 . CDS 38973 39041 . + 0 ID=Phyra48791;Parent=Phyra48791;rank=3 scaffold_42 . exon 38973 39041 . + . ID=Phyra48791.3;Parent=Phyra48791;constitutive=1;rank=3 scaffold_42 ensembl protein_coding_gene 35518 36714 . - . ID=Phyra71719;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_42000005;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 35518 36714 . - . ID=Phyra71719;Parent=Phyra71719;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 35518 36714 . - 0 ID=Phyra71719;Parent=Phyra71719;rank=1 scaffold_42 . exon 35518 36714 . - . ID=Phyra71719.1;Parent=Phyra71719;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 29836 30423 . + . ID=Phyra79607;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000017;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 29836 30423 . + . ID=Phyra79607;Parent=Phyra79607;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 29836 30423 . + 0 ID=Phyra79607;Parent=Phyra79607;rank=1 scaffold_42 . exon 29836 30423 . + . ID=Phyra79607.1;Parent=Phyra79607;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 30744 33844 . + . ID=Phyra79608;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000018;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 30744 33844 . + . ID=Phyra79608;Parent=Phyra79608;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 30744 30904 . + 0 ID=Phyra79608;Parent=Phyra79608;rank=1 scaffold_42 . exon 30744 30904 . + . ID=Phyra79608.1;Parent=Phyra79608;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 30976 31052 . + 0 ID=Phyra79608;Parent=Phyra79608;rank=2 scaffold_42 . exon 30976 31052 . + . ID=Phyra79608.2;Parent=Phyra79608;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 31122 33844 . + 0 ID=Phyra79608;Parent=Phyra79608;rank=3 scaffold_42 . exon 31122 33844 . + . ID=Phyra79608.3;Parent=Phyra79608;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 . biological_region 39690 39695 0.999 + . logic_name=eponine scaffold_42 . biological_region 43466 43469 0.999 + . logic_name=eponine scaffold_42 . repeat_region 47494 47575 . ? . description=trf scaffold_42 ensembl protein_coding_gene 43505 44912 . - . ID=Phyra79613;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000023;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 43505 44912 . - . ID=Phyra79613;Parent=Phyra79613;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 43505 44494 . - 0 ID=Phyra79613;Parent=Phyra79613;rank=2 scaffold_42 . exon 43505 44494 . - . ID=Phyra79613.2;Parent=Phyra79613;constitutive=1;rank=2 scaffold_42 . CDS 44568 44912 . - 0 ID=Phyra79613;Parent=Phyra79613;rank=1 scaffold_42 . exon 44568 44912 . - . ID=Phyra79613.1;Parent=Phyra79613;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 39946 43027 . + . ID=Phyra95416;biotype=protein_coding;external_name=C_scaffold_42000007;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 39946 43027 . + . ID=Phyra95416;Parent=Phyra95416;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 39946 40061 . + 0 ID=Phyra95416;Parent=Phyra95416;rank=1 scaffold_42 . exon 39946 40061 . + . ID=Phyra95416.1;Parent=Phyra95416;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 40323 40679 . + 0 ID=Phyra95416;Parent=Phyra95416;rank=2 scaffold_42 . exon 40323 40679 . + . ID=Phyra95416.2;Parent=Phyra95416;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_42 . CDS 40713 40917 . + 0 ID=Phyra95416;Parent=Phyra95416;rank=3 scaffold_42 . exon 40713 40917 . + . ID=Phyra95416.3;Parent=Phyra95416;constitutive=1;ensembl_phase=2;rank=3 scaffold_42 . CDS 41004 41032 . + 0 ID=Phyra95416;Parent=Phyra95416;rank=4 scaffold_42 . exon 41004 41032 . + . ID=Phyra95416.4;Parent=Phyra95416;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_42 . CDS 41064 41122 . + 0 ID=Phyra95416;Parent=Phyra95416;rank=5 scaffold_42 . exon 41064 41122 . + . ID=Phyra95416.5;Parent=Phyra95416;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_42 . CDS 41311 41432 . + 0 ID=Phyra95416;Parent=Phyra95416;rank=6 scaffold_42 . exon 41311 41432 . + . ID=Phyra95416.6;Parent=Phyra95416;constitutive=1;ensembl_phase=1;rank=6 scaffold_42 . CDS 41511 41681 . + 0 ID=Phyra95416;Parent=Phyra95416;rank=7 scaffold_42 . exon 41511 41681 . + . ID=Phyra95416.7;Parent=Phyra95416;constitutive=1;rank=7 scaffold_42 . CDS 41753 41841 . + 0 ID=Phyra95416;Parent=Phyra95416;rank=8 scaffold_42 . exon 41753 41841 . + . ID=Phyra95416.8;Parent=Phyra95416;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_42 . CDS 41909 42331 . + 0 ID=Phyra95416;Parent=Phyra95416;rank=9 scaffold_42 . exon 41909 42331 . + . ID=Phyra95416.9;Parent=Phyra95416;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_42 . CDS 42509 42677 . + 0 ID=Phyra95416;Parent=Phyra95416;rank=10 scaffold_42 . exon 42509 42677 . + . ID=Phyra95416.10;Parent=Phyra95416;constitutive=1;ensembl_phase=2;rank=10 scaffold_42 . CDS 42746 42836 . + 0 ID=Phyra95416;Parent=Phyra95416;rank=11 scaffold_42 . exon 42746 42836 . + . ID=Phyra95416.11;Parent=Phyra95416;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_42 . CDS 42903 43027 . + 0 ID=Phyra95416;Parent=Phyra95416;rank=12 scaffold_42 . exon 42903 43027 . + . ID=Phyra95416.12;Parent=Phyra95416;constitutive=1;ensembl_phase=1;rank=12 scaffold_42 . repeat_region 50193 50200 . ? . description=dust scaffold_42 . biological_region 61988 61991 0.999 + . logic_name=eponine scaffold_42 . biological_region 62248 62249 0.999 + . logic_name=eponine scaffold_42 . repeat_region 64036 64235 . + . description=GypsyPi-1c_I-int scaffold_42 . repeat_region 64959 65006 . ? . description=trf scaffold_42 ensembl protein_coding_gene 61359 63298 . - . ID=Phyra79614;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000024;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 61359 63298 . - . ID=Phyra79614;Parent=Phyra79614;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 61359 62183 . - 0 ID=Phyra79614;Parent=Phyra79614;rank=4 scaffold_42 . exon 61359 62183 . - . ID=Phyra79614.4;Parent=Phyra79614;constitutive=1;rank=4 scaffold_42 . CDS 62685 63022 . - 0 ID=Phyra79614;Parent=Phyra79614;rank=3 scaffold_42 . exon 62685 63022 . - . ID=Phyra79614.3;Parent=Phyra79614;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 63060 63114 . - 0 ID=Phyra79614;Parent=Phyra79614;rank=2 scaffold_42 . exon 63060 63114 . - . ID=Phyra79614.2;Parent=Phyra79614;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_42 . CDS 63152 63298 . - 0 ID=Phyra79614;Parent=Phyra79614;rank=1 scaffold_42 . exon 63152 63298 . - . ID=Phyra79614.1;Parent=Phyra79614;constitutive=1;rank=1 scaffold_42 . repeat_region 68959 69017 . + . description=(TGAG)n scaffold_42 . repeat_region 70207 70214 . ? . description=dust scaffold_42 . repeat_region 72215 72222 . ? . description=dust scaffold_42 . repeat_region 73670 73719 . ? . description=dust scaffold_42 . repeat_region 75123 76596 . ? . description=dust scaffold_42 . repeat_region 77415 77569 . ? . description=dust scaffold_42 ensembl gene 69289 69590 . + . ID=EPrPRAG00000000037;biotype=SRP_RNA;description=Eukaryotic type signal recognition particle RNA [Source:RFAM%3BAcc:RF00017];external_name=SRP_euk_arch;logic_name=ncrna_eg scaffold_42 ensembl transcript 69289 69590 . + . ID=EPrPRAT00000000037;Parent=EPrPRAG00000000037;biotype=SRP_RNA;logic_name=ncrna_eg scaffold_42 ensembl tRNA_gene 68596 68673 . - . ID=EPrPRAG00000000098;biotype=tRNA;description=tRNA-Leu for anticodon AAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_42 ensembl transcript 68596 68673 . - . ID=EPrPRAT00000000098;Parent=EPrPRAG00000000098;biotype=tRNA;logic_name=ncrna_eg scaffold_42 . exon 69289 69590 . + . ID=EPrPRAE00000000037;Parent=EPrPRAT00000000037;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . exon 68596 68673 . - . ID=EPrPRAE00000000098;Parent=EPrPRAT00000000098;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 73414 74820 . - . ID=Phyra79615;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000025;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 73414 74820 . - . ID=Phyra79615;Parent=Phyra79615;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 73414 73640 . - 0 ID=Phyra79615;Parent=Phyra79615;rank=2 scaffold_42 . exon 73414 73640 . - . ID=Phyra79615.2;Parent=Phyra79615;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 73767 74820 . - 0 ID=Phyra79615;Parent=Phyra79615;rank=1 scaffold_42 . exon 73767 74820 . - . ID=Phyra79615.1;Parent=Phyra79615;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . repeat_region 82034 82092 . + . description=(CTCA)n scaffold_42 . repeat_region 85462 85659 . + . description=GypsyPi-1c_LTR scaffold_42 . repeat_region 85737 86713 . + . description=GypsyPi-1c_I-int scaffold_42 . repeat_region 86977 87136 . + . description=GypsyPi-1c_I-int scaffold_42 . repeat_region 87329 87400 . + . description=GypsyPi-1c_I-int scaffold_42 ensembl tRNA_gene 82378 82455 . + . ID=EPrPRAG00000000173;biotype=tRNA;description=tRNA-Leu for anticodon AAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_42 ensembl transcript 82378 82455 . + . ID=EPrPRAT00000000173;Parent=EPrPRAG00000000173;biotype=tRNA;logic_name=ncrna_eg scaffold_42 ensembl gene 81461 81762 . - . ID=EPrPRAG00000000208;biotype=SRP_RNA;description=Eukaryotic type signal recognition particle RNA [Source:RFAM%3BAcc:RF00017];external_name=SRP_euk_arch;logic_name=ncrna_eg scaffold_42 ensembl transcript 81461 81762 . - . ID=EPrPRAT00000000208;Parent=EPrPRAG00000000208;biotype=SRP_RNA;logic_name=ncrna_eg scaffold_42 . exon 82378 82455 . + . ID=EPrPRAE00000000173;Parent=EPrPRAT00000000173;constitutive=1;rank=1 scaffold_42 . exon 81461 81762 . - . ID=EPrPRAE00000000208;Parent=EPrPRAT00000000208;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 83997 85447 . + . ID=Phyra79616;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000026;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 83997 85447 . + . ID=Phyra79616;Parent=Phyra79616;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 83997 84230 . + 0 ID=Phyra79616;Parent=Phyra79616;rank=1 scaffold_42 . exon 83997 84230 . + . ID=Phyra79616.1;Parent=Phyra79616;constitutive=1;rank=1 scaffold_42 . CDS 84356 84979 . + 0 ID=Phyra79616;Parent=Phyra79616;rank=2 scaffold_42 . exon 84356 84979 . + . ID=Phyra79616.2;Parent=Phyra79616;constitutive=1;rank=2 scaffold_42 . CDS 85024 85034 . + 0 ID=Phyra79616;Parent=Phyra79616;rank=3 scaffold_42 . exon 85024 85034 . + . ID=Phyra79616.3;Parent=Phyra79616;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_42 . CDS 85090 85447 . + 0 ID=Phyra79616;Parent=Phyra79616;rank=4 scaffold_42 . exon 85090 85447 . + . ID=Phyra79616.4;Parent=Phyra79616;constitutive=1;ensembl_phase=2;rank=4 scaffold_42 . repeat_region 88728 88777 . ? . description=dust scaffold_42 . biological_region 90075 90080 0.999 + . logic_name=eponine scaffold_42 . biological_region 90558 90558 0.999 + . logic_name=eponine scaffold_42 . repeat_region 90701 90897 . ? . description=dust scaffold_42 . biological_region 92134 92138 0.999 - . logic_name=eponine scaffold_42 . biological_region 92172 92174 0.999 - . logic_name=eponine scaffold_42 . biological_region 93733 93736 0.999 - . logic_name=eponine scaffold_42 . biological_region 93896 93897 0.999 + . logic_name=eponine scaffold_42 . biological_region 94407 94409 0.999 - . logic_name=eponine scaffold_42 . repeat_region 94671 95323 . ? . description=dust scaffold_42 . repeat_region 95439 95452 . ? . description=dust scaffold_42 ensembl protein_coding_gene 88848 93526 . + . ID=Phyra79617;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000027;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 88848 93526 . + . ID=Phyra79617;Parent=Phyra79617;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 88848 89269 . + 0 ID=Phyra79617;Parent=Phyra79617;rank=1 scaffold_42 . exon 88848 89269 . + . ID=Phyra79617.1;Parent=Phyra79617;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 89314 89679 . + 0 ID=Phyra79617;Parent=Phyra79617;rank=2 scaffold_42 . exon 89314 89679 . + . ID=Phyra79617.2;Parent=Phyra79617;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_42 . CDS 89868 89944 . + 0 ID=Phyra79617;Parent=Phyra79617;rank=3 scaffold_42 . exon 89868 89944 . + . ID=Phyra79617.3;Parent=Phyra79617;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_42 . CDS 90240 90620 . + 0 ID=Phyra79617;Parent=Phyra79617;rank=4 scaffold_42 . exon 90240 90620 . + . ID=Phyra79617.4;Parent=Phyra79617;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_42 . CDS 90953 91219 . + 0 ID=Phyra79617;Parent=Phyra79617;rank=5 scaffold_42 . exon 90953 91219 . + . ID=Phyra79617.5;Parent=Phyra79617;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_42 . CDS 91262 93294 . + 0 ID=Phyra79617;Parent=Phyra79617;rank=6 scaffold_42 . exon 91262 93294 . + . ID=Phyra79617.6;Parent=Phyra79617;constitutive=1;ensembl_phase=1;rank=6 scaffold_42 . CDS 93350 93526 . + 0 ID=Phyra79617;Parent=Phyra79617;rank=7 scaffold_42 . exon 93350 93526 . + . ID=Phyra79617.7;Parent=Phyra79617;constitutive=1;rank=7 scaffold_42 ensembl protein_coding_gene 96855 98900 . + . ID=Phyra79618;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000028;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 96855 98900 . + . ID=Phyra79618;Parent=Phyra79618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 96855 96876 . + 0 ID=Phyra79618;Parent=Phyra79618;rank=1 scaffold_42 . exon 96855 96876 . + . ID=Phyra79618.1;Parent=Phyra79618;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . CDS 96899 97060 . + 0 ID=Phyra79618;Parent=Phyra79618;rank=2 scaffold_42 . exon 96899 97060 . + . ID=Phyra79618.2;Parent=Phyra79618;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 97123 97572 . + 0 ID=Phyra79618;Parent=Phyra79618;rank=3 scaffold_42 . exon 97123 97572 . + . ID=Phyra79618.3;Parent=Phyra79618;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 97940 98194 . + 0 ID=Phyra79618;Parent=Phyra79618;rank=4 scaffold_42 . CDS 98299 98900 . + 0 ID=Phyra79618;Parent=Phyra79618;rank=5 scaffold_42 . repeat_region 98975 99036 . ? . description=trf scaffold_42 . exon 97940 98194 . + . ID=Phyra79618.4;Parent=Phyra79618;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_42 . exon 98299 98900 . + . ID=Phyra79618.5;Parent=Phyra79618;constitutive=1;ensembl_phase=1;rank=5 scaffold_42 ensembl protein_coding_gene 99121 106325 . - . ID=Phyra79619;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000029;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 99121 106325 . - . ID=Phyra79619;Parent=Phyra79619;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 99121 101330 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=18 scaffold_42 . exon 99121 101330 . - . ID=Phyra79619.18;Parent=Phyra79619;constitutive=1;ensembl_phase=1;rank=18 scaffold_42 . CDS 101409 101618 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=17 scaffold_42 . exon 101409 101618 . - . ID=Phyra79619.17;Parent=Phyra79619;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=17 scaffold_42 . CDS 101835 101963 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=16 scaffold_42 . exon 101835 101963 . - . ID=Phyra79619.16;Parent=Phyra79619;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=16 scaffold_42 . CDS 102347 102444 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=15 scaffold_42 . exon 102347 102444 . - . ID=Phyra79619.15;Parent=Phyra79619;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=15 scaffold_42 . CDS 102554 102891 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=14 scaffold_42 . exon 102554 102891 . - . ID=Phyra79619.14;Parent=Phyra79619;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_42 . CDS 102974 103057 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=13 scaffold_42 . exon 102974 103057 . - . ID=Phyra79619.13;Parent=Phyra79619;constitutive=1;rank=13 scaffold_42 . CDS 103124 103258 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=12 scaffold_42 . exon 103124 103258 . - . ID=Phyra79619.12;Parent=Phyra79619;constitutive=1;rank=12 scaffold_42 . CDS 103321 103632 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=11 scaffold_42 . exon 103321 103632 . - . ID=Phyra79619.11;Parent=Phyra79619;constitutive=1;rank=11 scaffold_42 . CDS 103746 103836 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=10 scaffold_42 . exon 103746 103836 . - . ID=Phyra79619.10;Parent=Phyra79619;constitutive=1;ensembl_phase=2;rank=10 scaffold_42 . CDS 103893 103964 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=9 scaffold_42 . exon 103893 103964 . - . ID=Phyra79619.9;Parent=Phyra79619;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_42 . CDS 104034 104380 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=8 scaffold_42 . exon 104034 104380 . - . ID=Phyra79619.8;Parent=Phyra79619;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_42 . CDS 104450 104480 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=7 scaffold_42 . exon 104450 104480 . - . ID=Phyra79619.7;Parent=Phyra79619;constitutive=1;ensembl_phase=2;rank=7 scaffold_42 . CDS 104545 104609 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=6 scaffold_42 . exon 104545 104609 . - . ID=Phyra79619.6;Parent=Phyra79619;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_42 . CDS 104676 104772 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=5 scaffold_42 . exon 104676 104772 . - . ID=Phyra79619.5;Parent=Phyra79619;constitutive=1;ensembl_phase=2;rank=5 scaffold_42 . CDS 104957 105203 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=4 scaffold_42 . exon 104957 105203 . - . ID=Phyra79619.4;Parent=Phyra79619;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_42 . CDS 105372 105834 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=3 scaffold_42 . exon 105372 105834 . - . ID=Phyra79619.3;Parent=Phyra79619;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_42 . CDS 105874 105979 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=2 scaffold_42 . exon 105874 105979 . - . ID=Phyra79619.2;Parent=Phyra79619;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 106051 106325 . - 0 ID=Phyra79619;Parent=Phyra79619;rank=1 scaffold_42 . exon 106051 106325 . - . ID=Phyra79619.1;Parent=Phyra79619;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 106737 109454 . + . ID=Phyra79620;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000030;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 106737 109454 . + . ID=Phyra79620;Parent=Phyra79620;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 106737 106772 . + 0 ID=Phyra79620;Parent=Phyra79620;rank=1 scaffold_42 . exon 106737 106772 . + . ID=Phyra79620.1;Parent=Phyra79620;constitutive=1;rank=1 scaffold_42 . CDS 106869 106966 . + 0 ID=Phyra79620;Parent=Phyra79620;rank=2 scaffold_42 . exon 106869 106966 . + . ID=Phyra79620.2;Parent=Phyra79620;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_42 . CDS 107048 108890 . + 0 ID=Phyra79620;Parent=Phyra79620;rank=3 scaffold_42 . exon 107048 108890 . + . ID=Phyra79620.3;Parent=Phyra79620;constitutive=1;ensembl_phase=2;rank=3 scaffold_42 . CDS 108970 109263 . + 0 ID=Phyra79620;Parent=Phyra79620;rank=4 scaffold_42 . CDS 109329 109454 . + 0 ID=Phyra79620;Parent=Phyra79620;rank=5 scaffold_42 . biological_region 109101 109103 0.999 - . logic_name=eponine scaffold_42 . biological_region 111426 111427 0.999 - . logic_name=eponine scaffold_42 . biological_region 111515 111518 0.999 - . logic_name=eponine scaffold_42 . biological_region 111562 111564 0.999 - . logic_name=eponine scaffold_42 . biological_region 112237 112238 0.999 + . logic_name=eponine scaffold_42 . biological_region 112276 112282 0.999 - . logic_name=eponine scaffold_42 . biological_region 113106 113110 0.999 - . logic_name=eponine scaffold_42 . biological_region 114015 114018 0.999 + . logic_name=eponine scaffold_42 . biological_region 114360 114365 0.999 - . logic_name=eponine scaffold_42 . biological_region 115566 115570 0.999 - . logic_name=eponine scaffold_42 . biological_region 115660 115666 0.999 - . logic_name=eponine scaffold_42 . biological_region 115999 116006 0.999 + . logic_name=eponine scaffold_42 . biological_region 116077 116079 0.999 - . logic_name=eponine scaffold_42 . biological_region 116894 116897 0.999 - . logic_name=eponine scaffold_42 . exon 108970 109263 . + . ID=Phyra79620.4;Parent=Phyra79620;constitutive=1;rank=4 scaffold_42 . exon 109329 109454 . + . ID=Phyra79620.5;Parent=Phyra79620;constitutive=1;rank=5 scaffold_42 ensembl protein_coding_gene 112078 113316 . + . ID=Phyra79623;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000033;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 112078 113316 . + . ID=Phyra79623;Parent=Phyra79623;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 112078 113316 . + 0 ID=Phyra79623;Parent=Phyra79623;rank=1 scaffold_42 . exon 112078 113316 . + . ID=Phyra79623.1;Parent=Phyra79623;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 115002 115652 . - . ID=Phyra79625;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000035;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 115002 115652 . - . ID=Phyra79625;Parent=Phyra79625;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 115002 115652 . - 0 ID=Phyra79625;Parent=Phyra79625;rank=1 scaffold_42 . exon 115002 115652 . - . ID=Phyra79625.1;Parent=Phyra79625;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 115978 116772 . - . ID=Phyra79626;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000036;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 115978 116772 . - . ID=Phyra79626;Parent=Phyra79626;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 115978 116636 . - 0 ID=Phyra79626;Parent=Phyra79626;rank=2 scaffold_42 . exon 115978 116636 . - . ID=Phyra79626.2;Parent=Phyra79626;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 116715 116772 . - 0 ID=Phyra79626;Parent=Phyra79626;rank=1 scaffold_42 . exon 116715 116772 . - . ID=Phyra79626.1;Parent=Phyra79626;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 ensembl protein_coding_gene 109696 111737 . - . ID=Phyra95419;biotype=protein_coding;external_name=C_scaffold_42000010;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 109696 111737 . - . ID=Phyra95419;Parent=Phyra95419;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 109696 109829 . - 0 ID=Phyra95419;Parent=Phyra95419;rank=8 scaffold_42 . exon 109696 109829 . - . ID=Phyra95419.8;Parent=Phyra95419;constitutive=1;ensembl_phase=1;rank=8 scaffold_42 . CDS 109903 110025 . - 0 ID=Phyra95419;Parent=Phyra95419;rank=7 scaffold_42 . exon 109903 110025 . - . ID=Phyra95419.7;Parent=Phyra95419;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_42 . CDS 110104 110226 . - 0 ID=Phyra95419;Parent=Phyra95419;rank=6 scaffold_42 . exon 110104 110226 . - . ID=Phyra95419.6;Parent=Phyra95419;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_42 . CDS 110300 110422 . - 0 ID=Phyra95419;Parent=Phyra95419;rank=5 scaffold_42 . exon 110300 110422 . - . ID=Phyra95419.5;Parent=Phyra95419;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_42 . CDS 110495 110617 . - 0 ID=Phyra95419;Parent=Phyra95419;rank=4 scaffold_42 . exon 110495 110617 . - . ID=Phyra95419.4;Parent=Phyra95419;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_42 . CDS 110700 110819 . - 0 ID=Phyra95419;Parent=Phyra95419;rank=3 scaffold_42 . exon 110700 110819 . - . ID=Phyra95419.3;Parent=Phyra95419;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 110881 110960 . - 0 ID=Phyra95419;Parent=Phyra95419;rank=2 scaffold_42 . exon 110881 110960 . - . ID=Phyra95419.2;Parent=Phyra95419;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 111226 111737 . - 0 ID=Phyra95419;Parent=Phyra95419;rank=1 scaffold_42 . exon 111226 111737 . - . ID=Phyra95419.1;Parent=Phyra95419;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 113871 114355 . - . ID=Phyra95422;biotype=protein_coding;external_name=C_scaffold_42000013;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 113871 114355 . - . ID=Phyra95422;Parent=Phyra95422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 113871 113984 . - 0 ID=Phyra95422;Parent=Phyra95422;rank=2 scaffold_42 . exon 113871 113984 . - . ID=Phyra95422.2;Parent=Phyra95422;constitutive=1;rank=2 scaffold_42 . CDS 114047 114355 . - 0 ID=Phyra95422;Parent=Phyra95422;rank=1 scaffold_42 . exon 114047 114355 . - . ID=Phyra95422.1;Parent=Phyra95422;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 114494 114754 . + . ID=Phyra95424;biotype=protein_coding;external_name=C_scaffold_42000015;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 114494 114754 . + . ID=Phyra95424;Parent=Phyra95424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 114494 114754 . + 0 ID=Phyra95424;Parent=Phyra95424;rank=1 scaffold_42 . exon 114494 114754 . + . ID=Phyra95424.1;Parent=Phyra95424;constitutive=1;rank=1 scaffold_42 . repeat_region 121438 121454 . ? . description=dust scaffold_42 ensembl protein_coding_gene 117950 119204 . + . ID=Phyra79627;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000037;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 117950 119204 . + . ID=Phyra79627;Parent=Phyra79627;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 117950 118189 . + 0 ID=Phyra79627;Parent=Phyra79627;rank=1 scaffold_42 . exon 117950 118189 . + . ID=Phyra79627.1;Parent=Phyra79627;constitutive=1;rank=1 scaffold_42 . CDS 118271 118987 . + 0 ID=Phyra79627;Parent=Phyra79627;rank=2 scaffold_42 . exon 118271 118987 . + . ID=Phyra79627.2;Parent=Phyra79627;constitutive=1;rank=2 scaffold_42 . CDS 119061 119204 . + 0 ID=Phyra79627;Parent=Phyra79627;rank=3 scaffold_42 . exon 119061 119204 . + . ID=Phyra79627.3;Parent=Phyra79627;constitutive=1;rank=3 scaffold_42 ensembl protein_coding_gene 126162 126770 . + . ID=Phyra79628;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000038;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 126162 126770 . + . ID=Phyra79628;Parent=Phyra79628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 126162 126282 . + 0 ID=Phyra79628;Parent=Phyra79628;rank=1 scaffold_42 . exon 126162 126282 . + . ID=Phyra79628.1;Parent=Phyra79628;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . CDS 126445 126770 . + 0 ID=Phyra79628;Parent=Phyra79628;rank=2 scaffold_42 . exon 126445 126770 . + . ID=Phyra79628.2;Parent=Phyra79628;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . repeat_region 129689 129710 . ? . description=trf scaffold_42 . repeat_region 136197 136216 . ? . description=trf scaffold_42 ensembl protein_coding_gene 132720 134287 . - . ID=Phyra79629;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000039;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 132720 134287 . - . ID=Phyra79629;Parent=Phyra79629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 132720 133777 . - 0 ID=Phyra79629;Parent=Phyra79629;rank=5 scaffold_42 . exon 132720 133777 . - . ID=Phyra79629.5;Parent=Phyra79629;constitutive=1;ensembl_phase=1;rank=5 scaffold_42 . CDS 133845 133975 . - 0 ID=Phyra79629;Parent=Phyra79629;rank=4 scaffold_42 . exon 133845 133975 . - . ID=Phyra79629.4;Parent=Phyra79629;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_42 . CDS 134019 134022 . - 0 ID=Phyra79629;Parent=Phyra79629;rank=3 scaffold_42 . exon 134019 134022 . - . ID=Phyra79629.3;Parent=Phyra79629;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_42 . CDS 134069 134147 . - 0 ID=Phyra79629;Parent=Phyra79629;rank=2 scaffold_42 . exon 134069 134147 . - . ID=Phyra79629.2;Parent=Phyra79629;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_42 . CDS 134228 134287 . - 0 ID=Phyra79629;Parent=Phyra79629;rank=1 scaffold_42 . exon 134228 134287 . - . ID=Phyra79629.1;Parent=Phyra79629;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 134423 137305 . - . ID=Phyra79630;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000040;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 134423 137305 . - . ID=Phyra79630;Parent=Phyra79630;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 134423 137305 . - 0 ID=Phyra79630;Parent=Phyra79630;rank=1 scaffold_42 . exon 134423 137305 . - . ID=Phyra79630.1;Parent=Phyra79630;constitutive=1;rank=1 scaffold_42 . biological_region 140068 140070 0.999 + . logic_name=eponine scaffold_42 . biological_region 140171 140178 0.999 + . logic_name=eponine scaffold_42 . biological_region 140210 140213 0.999 + . logic_name=eponine scaffold_42 . biological_region 140293 140298 0.999 + . logic_name=eponine scaffold_42 . biological_region 140331 140337 0.999 - . logic_name=eponine scaffold_42 . biological_region 140367 140371 0.999 + . logic_name=eponine scaffold_42 . biological_region 140372 140379 0.999 - . logic_name=eponine scaffold_42 . biological_region 140392 140397 0.999 - . logic_name=eponine scaffold_42 . biological_region 140930 140938 0.999 - . logic_name=eponine scaffold_42 . biological_region 141533 141533 0.999 - . logic_name=eponine scaffold_42 . biological_region 141894 141901 0.999 + . logic_name=eponine scaffold_42 . biological_region 141974 141978 0.999 + . logic_name=eponine scaffold_42 . biological_region 142045 142048 0.999 - . logic_name=eponine scaffold_42 . biological_region 142816 142818 0.999 - . logic_name=eponine scaffold_42 . biological_region 143455 143458 0.999 + . logic_name=eponine scaffold_42 . biological_region 143903 143903 0.999 - . logic_name=eponine scaffold_42 . biological_region 144215 144218 0.999 - . logic_name=eponine scaffold_42 . biological_region 144272 144274 0.999 - . logic_name=eponine scaffold_42 . biological_region 144398 144402 0.999 - . logic_name=eponine scaffold_42 . biological_region 144621 144622 0.999 - . logic_name=eponine scaffold_42 . biological_region 144700 144702 0.999 - . logic_name=eponine scaffold_42 . biological_region 145035 145037 0.999 + . logic_name=eponine scaffold_42 . biological_region 145059 145060 0.999 + . logic_name=eponine scaffold_42 . biological_region 145183 145187 0.999 - . logic_name=eponine scaffold_42 . biological_region 145208 145209 0.999 - . logic_name=eponine scaffold_42 . biological_region 145263 145272 0.999 + . logic_name=eponine scaffold_42 . biological_region 145275 145278 0.999 - . logic_name=eponine scaffold_42 . biological_region 145329 145333 0.999 + . logic_name=eponine scaffold_42 . biological_region 145351 145353 0.999 + . logic_name=eponine scaffold_42 . biological_region 145379 145386 0.999 - . logic_name=eponine scaffold_42 ensembl protein_coding_gene 137621 140494 . - . ID=Phyra79631;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000041;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 137621 140494 . - . ID=Phyra79631;Parent=Phyra79631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 137621 140494 . - 0 ID=Phyra79631;Parent=Phyra79631;rank=1 scaffold_42 . exon 137621 140494 . - . ID=Phyra79631.1;Parent=Phyra79631;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 143712 144545 . + . ID=Phyra79632;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000042;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 143712 144545 . + . ID=Phyra79632;Parent=Phyra79632;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 143712 144545 . + 0 ID=Phyra79632;Parent=Phyra79632;rank=1 scaffold_42 . exon 143712 144545 . + . ID=Phyra79632.1;Parent=Phyra79632;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 145045 145966 . + . ID=Phyra95435;biotype=protein_coding;external_name=C_scaffold_42000026;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 145045 145966 . + . ID=Phyra95435;Parent=Phyra95435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 145045 145449 . + 0 ID=Phyra95435;Parent=Phyra95435;rank=1 scaffold_42 . exon 145045 145449 . + . ID=Phyra95435.1;Parent=Phyra95435;constitutive=1;rank=1 scaffold_42 . CDS 145552 145612 . + 0 ID=Phyra95435;Parent=Phyra95435;rank=2 scaffold_42 . exon 145552 145612 . + . ID=Phyra95435.2;Parent=Phyra95435;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_42 . CDS 145722 145966 . + 0 ID=Phyra95435;Parent=Phyra95435;rank=3 scaffold_42 . exon 145722 145966 . + . ID=Phyra95435.3;Parent=Phyra95435;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 ensembl protein_coding_gene 147211 150683 . - . ID=Phyra79634;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000044;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 147211 150683 . - . ID=Phyra79634;Parent=Phyra79634;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 147211 148539 . - 0 ID=Phyra79634;Parent=Phyra79634;rank=5 scaffold_42 . exon 147211 148539 . - . ID=Phyra79634.5;Parent=Phyra79634;constitutive=1;rank=5 scaffold_42 . CDS 148858 149031 . - 0 ID=Phyra79634;Parent=Phyra79634;rank=4 scaffold_42 . exon 148858 149031 . - . ID=Phyra79634.4;Parent=Phyra79634;constitutive=1;rank=4 scaffold_42 . CDS 149549 149600 . - 0 ID=Phyra79634;Parent=Phyra79634;rank=3 scaffold_42 . exon 149549 149600 . - . ID=Phyra79634.3;Parent=Phyra79634;constitutive=1;ensembl_phase=2;rank=3 scaffold_42 . CDS 149721 149911 . - 0 ID=Phyra79634;Parent=Phyra79634;rank=2 scaffold_42 . exon 149721 149911 . - . ID=Phyra79634.2;Parent=Phyra79634;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_42 . CDS 149979 150683 . - 0 ID=Phyra79634;Parent=Phyra79634;rank=1 scaffold_42 . exon 149979 150683 . - . ID=Phyra79634.1;Parent=Phyra79634;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 152900 153655 . - . ID=Phyra79636;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000046;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 152900 153655 . - . ID=Phyra79636;Parent=Phyra79636;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 152900 153655 . - 0 ID=Phyra79636;Parent=Phyra79636;rank=1 scaffold_42 . exon 152900 153655 . - . ID=Phyra79636.1;Parent=Phyra79636;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 156002 158191 . + . ID=Phyra79637;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000047;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 156002 158191 . + . ID=Phyra79637;Parent=Phyra79637;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 156002 156619 . + 0 ID=Phyra79637;Parent=Phyra79637;rank=1 scaffold_42 . exon 156002 156619 . + . ID=Phyra79637.1;Parent=Phyra79637;constitutive=1;rank=1 scaffold_42 . CDS 156681 156775 . + 0 ID=Phyra79637;Parent=Phyra79637;rank=2 scaffold_42 . CDS 156852 157005 . + 0 ID=Phyra79637;Parent=Phyra79637;rank=3 scaffold_42 . CDS 157092 157322 . + 0 ID=Phyra79637;Parent=Phyra79637;rank=4 scaffold_42 . CDS 157394 157516 . + 0 ID=Phyra79637;Parent=Phyra79637;rank=5 scaffold_42 . CDS 157590 157670 . + 0 ID=Phyra79637;Parent=Phyra79637;rank=6 scaffold_42 . CDS 157745 158191 . + 0 ID=Phyra79637;Parent=Phyra79637;rank=7 scaffold_42 ensembl protein_coding_gene 151194 152599 . + . ID=Phyra95438;biotype=protein_coding;external_name=C_scaffold_42000029;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 151194 152599 . + . ID=Phyra95438;Parent=Phyra95438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 151194 151593 . + 0 ID=Phyra95438;Parent=Phyra95438;rank=1 scaffold_42 . exon 151194 151593 . + . ID=Phyra95438.1;Parent=Phyra95438;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . CDS 151671 151698 . + 0 ID=Phyra95438;Parent=Phyra95438;rank=2 scaffold_42 . exon 151671 151698 . + . ID=Phyra95438.2;Parent=Phyra95438;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_42 . CDS 151762 152599 . + 0 ID=Phyra95438;Parent=Phyra95438;rank=3 scaffold_42 . exon 151762 152599 . + . ID=Phyra95438.3;Parent=Phyra95438;constitutive=1;ensembl_phase=2;rank=3 scaffold_42 . repeat_region 159982 160001 . ? . description=trf scaffold_42 . biological_region 160905 160907 0.999 - . logic_name=eponine scaffold_42 . repeat_region 161673 161722 . ? . description=dust scaffold_42 . repeat_region 161882 161901 . ? . description=trf scaffold_42 . biological_region 162831 162835 0.999 + . logic_name=eponine scaffold_42 . biological_region 163165 163169 0.999 - . logic_name=eponine scaffold_42 . repeat_region 164555 164574 . ? . description=trf scaffold_42 . biological_region 164768 164770 0.999 - . logic_name=eponine scaffold_42 . biological_region 164823 164824 0.999 + . logic_name=eponine scaffold_42 . biological_region 164863 164865 0.999 + . logic_name=eponine scaffold_42 . biological_region 165032 165033 0.999 - . logic_name=eponine scaffold_42 . biological_region 165047 165048 0.999 - . logic_name=eponine scaffold_42 . repeat_region 165978 167226 . ? . description=dust scaffold_42 . exon 156681 156775 . + . ID=Phyra79637.2;Parent=Phyra79637;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_42 . exon 156852 157005 . + . ID=Phyra79637.3;Parent=Phyra79637;constitutive=1;ensembl_phase=2;rank=3 scaffold_42 . exon 157092 157322 . + . ID=Phyra79637.4;Parent=Phyra79637;constitutive=1;rank=4 scaffold_42 . exon 157394 157516 . + . ID=Phyra79637.5;Parent=Phyra79637;constitutive=1;rank=5 scaffold_42 . exon 157590 157670 . + . ID=Phyra79637.6;Parent=Phyra79637;constitutive=1;rank=6 scaffold_42 . exon 157745 158191 . + . ID=Phyra79637.7;Parent=Phyra79637;constitutive=1;rank=7 scaffold_42 ensembl protein_coding_gene 158417 159619 . - . ID=Phyra79638;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000048;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 158417 159619 . - . ID=Phyra79638;Parent=Phyra79638;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 158417 158768 . - 0 ID=Phyra79638;Parent=Phyra79638;rank=2 scaffold_42 . exon 158417 158768 . - . ID=Phyra79638.2;Parent=Phyra79638;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 158850 159619 . - 0 ID=Phyra79638;Parent=Phyra79638;rank=1 scaffold_42 . exon 158850 159619 . - . ID=Phyra79638.1;Parent=Phyra79638;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 163063 163701 . + . ID=Phyra79639;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000049;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 163063 163701 . + . ID=Phyra79639;Parent=Phyra79639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 163063 163701 . + 0 ID=Phyra79639;Parent=Phyra79639;rank=1 scaffold_42 . exon 163063 163701 . + . ID=Phyra79639.1;Parent=Phyra79639;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 164794 165477 . - . ID=Phyra79640;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000050;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 164794 165477 . - . ID=Phyra79640;Parent=Phyra79640;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 164794 165477 . - 0 ID=Phyra79640;Parent=Phyra79640;rank=1 scaffold_42 . exon 164794 165477 . - . ID=Phyra79640.1;Parent=Phyra79640;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 167863 168519 . - . ID=Phyra79641;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000051;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 167863 168519 . - . ID=Phyra79641;Parent=Phyra79641;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 167863 168519 . - 0 ID=Phyra79641;Parent=Phyra79641;rank=1 scaffold_42 . exon 167863 168519 . - . ID=Phyra79641.1;Parent=Phyra79641;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 169796 170612 . - . ID=Phyra79642;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000052;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 169796 170612 . - . ID=Phyra79642;Parent=Phyra79642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 169796 170197 . - 0 ID=Phyra79642;Parent=Phyra79642;rank=2 scaffold_42 . exon 169796 170197 . - . ID=Phyra79642.2;Parent=Phyra79642;constitutive=1;rank=2 scaffold_42 . CDS 170277 170612 . - 0 ID=Phyra79642;Parent=Phyra79642;rank=1 scaffold_42 . exon 170277 170612 . - . ID=Phyra79642.1;Parent=Phyra79642;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 173366 174182 . - . ID=Phyra79644;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000054;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 173366 174182 . - . ID=Phyra79644;Parent=Phyra79644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 173366 173767 . - 0 ID=Phyra79644;Parent=Phyra79644;rank=2 scaffold_42 . exon 173366 173767 . - . ID=Phyra79644.2;Parent=Phyra79644;constitutive=1;rank=2 scaffold_42 . CDS 173847 174182 . - 0 ID=Phyra79644;Parent=Phyra79644;rank=1 scaffold_42 . exon 173847 174182 . - . ID=Phyra79644.1;Parent=Phyra79644;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 174301 175611 . - . ID=Phyra79645;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000055;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 174301 175611 . - . ID=Phyra79645;Parent=Phyra79645;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 174301 175611 . - 0 ID=Phyra79645;Parent=Phyra79645;rank=1 scaffold_42 . exon 174301 175611 . - . ID=Phyra79645.1;Parent=Phyra79645;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 172540 173260 . + . ID=Phyra95439;biotype=protein_coding;external_name=C_scaffold_42000030;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 172540 173260 . + . ID=Phyra95439;Parent=Phyra95439;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 172540 172764 . + 0 ID=Phyra95439;Parent=Phyra95439;rank=1 scaffold_42 . exon 172540 172764 . + . ID=Phyra95439.1;Parent=Phyra95439;constitutive=1;rank=1 scaffold_42 . CDS 172847 172891 . + 0 ID=Phyra95439;Parent=Phyra95439;rank=2 scaffold_42 . exon 172847 172891 . + . ID=Phyra95439.2;Parent=Phyra95439;constitutive=1;rank=2 scaffold_42 . CDS 173057 173260 . + 0 ID=Phyra95439;Parent=Phyra95439;rank=3 scaffold_42 . exon 173057 173260 . + . ID=Phyra95439.3;Parent=Phyra95439;constitutive=1;rank=3 scaffold_42 . repeat_region 176816 176865 . ? . description=dust scaffold_42 . biological_region 181750 181753 0.999 + . logic_name=eponine scaffold_42 . biological_region 181894 181896 0.999 - . logic_name=eponine scaffold_42 . biological_region 182095 182099 0.999 + . logic_name=eponine scaffold_42 . repeat_region 184686 184706 . ? . description=trf scaffold_42 . biological_region 185364 185366 0.999 + . logic_name=eponine scaffold_42 ensembl protein_coding_gene 179630 181750 . - . ID=Phyra71720;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_42000006;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 179630 181750 . - . ID=Phyra71720;Parent=Phyra71720;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 179630 181750 . - 0 ID=Phyra71720;Parent=Phyra71720;rank=1 scaffold_42 . exon 179630 181750 . - . ID=Phyra71720.1;Parent=Phyra71720;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 176711 177659 . + . ID=Phyra79646;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000056;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 176711 177659 . + . ID=Phyra79646;Parent=Phyra79646;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 176711 176797 . + 0 ID=Phyra79646;Parent=Phyra79646;rank=1 scaffold_42 . exon 176711 176797 . + . ID=Phyra79646.1;Parent=Phyra79646;constitutive=1;rank=1 scaffold_42 . CDS 176925 177359 . + 0 ID=Phyra79646;Parent=Phyra79646;rank=2 scaffold_42 . exon 176925 177359 . + . ID=Phyra79646.2;Parent=Phyra79646;constitutive=1;rank=2 scaffold_42 . CDS 177434 177494 . + 0 ID=Phyra79646;Parent=Phyra79646;rank=3 scaffold_42 . exon 177434 177494 . + . ID=Phyra79646.3;Parent=Phyra79646;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_42 . CDS 177568 177659 . + 0 ID=Phyra79646;Parent=Phyra79646;rank=4 scaffold_42 . exon 177568 177659 . + . ID=Phyra79646.4;Parent=Phyra79646;constitutive=1;ensembl_phase=1;rank=4 scaffold_42 ensembl protein_coding_gene 177825 178601 . + . ID=Phyra79647;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000057;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 177825 178601 . + . ID=Phyra79647;Parent=Phyra79647;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 177825 178601 . + 0 ID=Phyra79647;Parent=Phyra79647;rank=1 scaffold_42 . exon 177825 178601 . + . ID=Phyra79647.1;Parent=Phyra79647;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 178677 179405 . - . ID=Phyra79648;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000058;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 178677 179405 . - . ID=Phyra79648;Parent=Phyra79648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 178677 179182 . - 0 ID=Phyra79648;Parent=Phyra79648;rank=3 scaffold_42 . exon 178677 179182 . - . ID=Phyra79648.3;Parent=Phyra79648;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 179252 179295 . - 0 ID=Phyra79648;Parent=Phyra79648;rank=2 scaffold_42 . exon 179252 179295 . - . ID=Phyra79648.2;Parent=Phyra79648;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 179365 179405 . - 0 ID=Phyra79648;Parent=Phyra79648;rank=1 scaffold_42 . exon 179365 179405 . - . ID=Phyra79648.1;Parent=Phyra79648;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 183094 186541 . - . ID=Phyra95441;biotype=protein_coding;external_name=C_scaffold_42000032;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 183094 186541 . - . ID=Phyra95441;Parent=Phyra95441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 183094 183460 . - 0 ID=Phyra95441;Parent=Phyra95441;rank=7 scaffold_42 . exon 183094 183460 . - . ID=Phyra95441.7;Parent=Phyra95441;constitutive=1;ensembl_phase=2;rank=7 scaffold_42 . CDS 183512 183949 . - 0 ID=Phyra95441;Parent=Phyra95441;rank=6 scaffold_42 . exon 183512 183949 . - . ID=Phyra95441.6;Parent=Phyra95441;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_42 . CDS 184281 184674 . - 0 ID=Phyra95441;Parent=Phyra95441;rank=5 scaffold_42 . exon 184281 184674 . - . ID=Phyra95441.5;Parent=Phyra95441;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_42 . CDS 184720 184957 . - 0 ID=Phyra95441;Parent=Phyra95441;rank=4 scaffold_42 . exon 184720 184957 . - . ID=Phyra95441.4;Parent=Phyra95441;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_42 . CDS 185099 185788 . - 0 ID=Phyra95441;Parent=Phyra95441;rank=3 scaffold_42 . exon 185099 185788 . - . ID=Phyra95441.3;Parent=Phyra95441;constitutive=1;rank=3 scaffold_42 . CDS 185864 186103 . - 0 ID=Phyra95441;Parent=Phyra95441;rank=2 scaffold_42 . CDS 186134 186541 . - 0 ID=Phyra95441;Parent=Phyra95441;rank=1 scaffold_42 ensembl protein_coding_gene 192214 194209 . + . ID=Phyra48825;biotype=protein_coding;external_name=gwEuk.42.146.1;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 192214 194209 . + . ID=Phyra48825;Parent=Phyra48825;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 192214 192368 . + 0 ID=Phyra48825;Parent=Phyra48825;rank=1 scaffold_42 . exon 192214 192368 . + . ID=Phyra48825.1;Parent=Phyra48825;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 192442 194209 . + 0 ID=Phyra48825;Parent=Phyra48825;rank=2 scaffold_42 . exon 192442 194209 . + . ID=Phyra48825.2;Parent=Phyra48825;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 ensembl protein_coding_gene 186861 189352 . + . ID=Phyra79651;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000061;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 186861 189352 . + . ID=Phyra79651;Parent=Phyra79651;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 186861 186887 . + 0 ID=Phyra79651;Parent=Phyra79651;rank=1 scaffold_42 . exon 186861 186887 . + . ID=Phyra79651.1;Parent=Phyra79651;constitutive=1;rank=1 scaffold_42 . CDS 186946 189199 . + 0 ID=Phyra79651;Parent=Phyra79651;rank=2 scaffold_42 . exon 186946 189199 . + . ID=Phyra79651.2;Parent=Phyra79651;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_42 . CDS 189276 189352 . + 0 ID=Phyra79651;Parent=Phyra79651;rank=3 scaffold_42 . exon 189276 189352 . + . ID=Phyra79651.3;Parent=Phyra79651;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 ensembl protein_coding_gene 189447 190682 . - . ID=Phyra79652;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000062;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 189447 190682 . - . ID=Phyra79652;Parent=Phyra79652;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 189447 189973 . - 0 ID=Phyra79652;Parent=Phyra79652;rank=3 scaffold_42 . exon 189447 189973 . - . ID=Phyra79652.3;Parent=Phyra79652;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 190152 190246 . - 0 ID=Phyra79652;Parent=Phyra79652;rank=2 scaffold_42 . exon 190152 190246 . - . ID=Phyra79652.2;Parent=Phyra79652;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 190315 190682 . - 0 ID=Phyra79652;Parent=Phyra79652;rank=1 scaffold_42 . exon 190315 190682 . - . ID=Phyra79652.1;Parent=Phyra79652;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 194507 195066 . - . ID=Phyra79655;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000065;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 194507 195066 . - . ID=Phyra79655;Parent=Phyra79655;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 194507 194655 . - 0 ID=Phyra79655;Parent=Phyra79655;rank=4 scaffold_42 . exon 194507 194655 . - . ID=Phyra79655.4;Parent=Phyra79655;constitutive=1;ensembl_phase=1;rank=4 scaffold_42 . CDS 194715 194753 . - 0 ID=Phyra79655;Parent=Phyra79655;rank=3 scaffold_42 . exon 194715 194753 . - . ID=Phyra79655.3;Parent=Phyra79655;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 194839 194904 . - 0 ID=Phyra79655;Parent=Phyra79655;rank=2 scaffold_42 . exon 194839 194904 . - . ID=Phyra79655.2;Parent=Phyra79655;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 194955 195066 . - 0 ID=Phyra79655;Parent=Phyra79655;rank=1 scaffold_42 . exon 194955 195066 . - . ID=Phyra79655.1;Parent=Phyra79655;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . exon 185864 186103 . - . ID=Phyra95441.2;Parent=Phyra95441;constitutive=1;rank=2 scaffold_42 . exon 186134 186541 . - . ID=Phyra95441.1;Parent=Phyra95441;constitutive=1;rank=1 scaffold_42 . repeat_region 196401 196438 . ? . description=trf scaffold_42 . biological_region 196784 196790 0.999 + . logic_name=eponine scaffold_42 . biological_region 196903 196904 0.999 - . logic_name=eponine scaffold_42 . repeat_region 198272 198467 . ? . description=trf scaffold_42 . biological_region 199767 199769 0.999 - . logic_name=eponine scaffold_42 . biological_region 204236 204238 0.999 - . logic_name=eponine scaffold_42 ensembl protein_coding_gene 196807 200103 . + . ID=Phyra79656;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000066;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 196807 200103 . + . ID=Phyra79656;Parent=Phyra79656;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 196807 200103 . + 0 ID=Phyra79656;Parent=Phyra79656;rank=1 scaffold_42 . exon 196807 200103 . + . ID=Phyra79656.1;Parent=Phyra79656;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 200455 204375 . - . ID=Phyra79657;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000067;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 200455 204375 . - . ID=Phyra79657;Parent=Phyra79657;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 200455 204375 . - 0 ID=Phyra79657;Parent=Phyra79657;rank=1 scaffold_42 . exon 200455 204375 . - . ID=Phyra79657.1;Parent=Phyra79657;constitutive=1;rank=1 scaffold_42 . repeat_region 211034 211047 . ? . description=dust scaffold_42 . repeat_region 214309 214322 . ? . description=dust scaffold_42 ensembl protein_coding_gene 205220 205793 . + . ID=Phyra79658;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000068;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 205220 205793 . + . ID=Phyra79658;Parent=Phyra79658;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 205220 205351 . + 0 ID=Phyra79658;Parent=Phyra79658;rank=1 scaffold_42 . exon 205220 205351 . + . ID=Phyra79658.1;Parent=Phyra79658;constitutive=1;rank=1 scaffold_42 . CDS 205437 205793 . + 0 ID=Phyra79658;Parent=Phyra79658;rank=2 scaffold_42 . exon 205437 205793 . + . ID=Phyra79658.2;Parent=Phyra79658;constitutive=1;rank=2 scaffold_42 ensembl protein_coding_gene 206103 207182 . + . ID=Phyra79659;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000069;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 206103 207182 . + . ID=Phyra79659;Parent=Phyra79659;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 206103 206428 . + 0 ID=Phyra79659;Parent=Phyra79659;rank=1 scaffold_42 . exon 206103 206428 . + . ID=Phyra79659.1;Parent=Phyra79659;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 206498 206600 . + 0 ID=Phyra79659;Parent=Phyra79659;rank=2 scaffold_42 . exon 206498 206600 . + . ID=Phyra79659.2;Parent=Phyra79659;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 206679 207182 . + 0 ID=Phyra79659;Parent=Phyra79659;rank=3 scaffold_42 . exon 206679 207182 . + . ID=Phyra79659.3;Parent=Phyra79659;constitutive=1;rank=3 scaffold_42 ensembl protein_coding_gene 209113 210390 . + . ID=Phyra79660;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000070;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 209113 210390 . + . ID=Phyra79660;Parent=Phyra79660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 209113 209135 . + 0 ID=Phyra79660;Parent=Phyra79660;rank=1 scaffold_42 . exon 209113 209135 . + . ID=Phyra79660.1;Parent=Phyra79660;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 209259 210390 . + 0 ID=Phyra79660;Parent=Phyra79660;rank=2 scaffold_42 . exon 209259 210390 . + . ID=Phyra79660.2;Parent=Phyra79660;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 ensembl protein_coding_gene 211802 213438 . + . ID=Phyra79661;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000071;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 211802 213438 . + . ID=Phyra79661;Parent=Phyra79661;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 211802 212913 . + 0 ID=Phyra79661;Parent=Phyra79661;rank=1 scaffold_42 . exon 211802 212913 . + . ID=Phyra79661.1;Parent=Phyra79661;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 212982 213087 . + 0 ID=Phyra79661;Parent=Phyra79661;rank=2 scaffold_42 . exon 212982 213087 . + . ID=Phyra79661.2;Parent=Phyra79661;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 213155 213302 . + 0 ID=Phyra79661;Parent=Phyra79661;rank=3 scaffold_42 . exon 213155 213302 . + . ID=Phyra79661.3;Parent=Phyra79661;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_42 . CDS 213380 213438 . + 0 ID=Phyra79661;Parent=Phyra79661;rank=4 scaffold_42 . exon 213380 213438 . + . ID=Phyra79661.4;Parent=Phyra79661;constitutive=1;ensembl_phase=1;rank=4 scaffold_42 . repeat_region 216149 216203 . ? . description=trf scaffold_42 . repeat_region 218509 218550 . ? . description=trf scaffold_42 . repeat_region 218893 218982 . ? . description=trf scaffold_42 . repeat_region 218902 219010 . ? . description=trf scaffold_42 . repeat_region 219416 219435 . ? . description=trf scaffold_42 . repeat_region 219476 219525 . ? . description=trf scaffold_42 . biological_region 220024 220025 0.999 - . logic_name=eponine scaffold_42 ensembl protein_coding_gene 216559 217946 . - . ID=Phyra79662;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000072;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 216559 217946 . - . ID=Phyra79662;Parent=Phyra79662;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 216559 216930 . - 0 ID=Phyra79662;Parent=Phyra79662;rank=3 scaffold_42 . exon 216559 216930 . - . ID=Phyra79662.3;Parent=Phyra79662;constitutive=1;rank=3 scaffold_42 . CDS 217003 217626 . - 0 ID=Phyra79662;Parent=Phyra79662;rank=2 scaffold_42 . exon 217003 217626 . - . ID=Phyra79662.2;Parent=Phyra79662;constitutive=1;rank=2 scaffold_42 . CDS 217683 217946 . - 0 ID=Phyra79662;Parent=Phyra79662;rank=1 scaffold_42 . exon 217683 217946 . - . ID=Phyra79662.1;Parent=Phyra79662;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 218127 219053 . - . ID=Phyra79663;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000073;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 218127 219053 . - . ID=Phyra79663;Parent=Phyra79663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 218127 219053 . - 0 ID=Phyra79663;Parent=Phyra79663;rank=1 scaffold_42 . exon 218127 219053 . - . ID=Phyra79663.1;Parent=Phyra79663;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 221744 223897 . - . ID=Phyra79664;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000074;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 221744 223897 . - . ID=Phyra79664;Parent=Phyra79664;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 221744 223100 . - 0 ID=Phyra79664;Parent=Phyra79664;rank=4 scaffold_42 . exon 221744 223100 . - . ID=Phyra79664.4;Parent=Phyra79664;constitutive=1;ensembl_phase=2;rank=4 scaffold_42 . CDS 223233 223477 . - 0 ID=Phyra79664;Parent=Phyra79664;rank=3 scaffold_42 . exon 223233 223477 . - . ID=Phyra79664.3;Parent=Phyra79664;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_42 . CDS 223539 223743 . - 0 ID=Phyra79664;Parent=Phyra79664;rank=2 scaffold_42 . exon 223539 223743 . - . ID=Phyra79664.2;Parent=Phyra79664;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 223848 223897 . - 0 ID=Phyra79664;Parent=Phyra79664;rank=1 scaffold_42 . exon 223848 223897 . - . ID=Phyra79664.1;Parent=Phyra79664;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 224132 226918 . + . ID=Phyra95448;biotype=protein_coding;external_name=C_scaffold_42000039;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 224132 226918 . + . ID=Phyra95448;Parent=Phyra95448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 224132 224411 . + 0 ID=Phyra95448;Parent=Phyra95448;rank=1 scaffold_42 . exon 224132 224411 . + . ID=Phyra95448.1;Parent=Phyra95448;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . CDS 224433 224660 . + 0 ID=Phyra95448;Parent=Phyra95448;rank=2 scaffold_42 . exon 224433 224660 . + . ID=Phyra95448.2;Parent=Phyra95448;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 224766 224839 . + 0 ID=Phyra95448;Parent=Phyra95448;rank=3 scaffold_42 . CDS 224879 225221 . + 0 ID=Phyra95448;Parent=Phyra95448;rank=4 scaffold_42 . CDS 225672 225871 . + 0 ID=Phyra95448;Parent=Phyra95448;rank=5 scaffold_42 . CDS 225899 226918 . + 0 ID=Phyra95448;Parent=Phyra95448;rank=6 scaffold_42 ensembl protein_coding_gene 228888 231654 . - . ID=Phyra79667;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000077;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 228888 231654 . - . ID=Phyra79667;Parent=Phyra79667;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 228888 229052 . - 0 ID=Phyra79667;Parent=Phyra79667;rank=10 scaffold_42 . exon 228888 229052 . - . ID=Phyra79667.10;Parent=Phyra79667;constitutive=1;rank=10 scaffold_42 . CDS 229113 229181 . - 0 ID=Phyra79667;Parent=Phyra79667;rank=9 scaffold_42 . exon 229113 229181 . - . ID=Phyra79667.9;Parent=Phyra79667;constitutive=1;rank=9 scaffold_42 . CDS 229246 229395 . - 0 ID=Phyra79667;Parent=Phyra79667;rank=8 scaffold_42 . exon 229246 229395 . - . ID=Phyra79667.8;Parent=Phyra79667;constitutive=1;rank=8 scaffold_42 . CDS 229456 229521 . - 0 ID=Phyra79667;Parent=Phyra79667;rank=7 scaffold_42 . exon 229456 229521 . - . ID=Phyra79667.7;Parent=Phyra79667;constitutive=1;rank=7 scaffold_42 . CDS 229615 229677 . - 0 ID=Phyra79667;Parent=Phyra79667;rank=6 scaffold_42 . exon 229615 229677 . - . ID=Phyra79667.6;Parent=Phyra79667;constitutive=1;rank=6 scaffold_42 . CDS 229753 230442 . - 0 ID=Phyra79667;Parent=Phyra79667;rank=5 scaffold_42 . exon 229753 230442 . - . ID=Phyra79667.5;Parent=Phyra79667;constitutive=1;rank=5 scaffold_42 . CDS 230571 230821 . - 0 ID=Phyra79667;Parent=Phyra79667;rank=4 scaffold_42 . exon 230571 230821 . - . ID=Phyra79667.4;Parent=Phyra79667;constitutive=1;ensembl_phase=1;rank=4 scaffold_42 . CDS 230892 231146 . - 0 ID=Phyra79667;Parent=Phyra79667;rank=3 scaffold_42 . exon 230892 231146 . - . ID=Phyra79667.3;Parent=Phyra79667;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 231447 231557 . - 0 ID=Phyra79667;Parent=Phyra79667;rank=2 scaffold_42 . exon 231447 231557 . - . ID=Phyra79667.2;Parent=Phyra79667;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 231639 231654 . - 0 ID=Phyra79667;Parent=Phyra79667;rank=1 scaffold_42 . exon 231639 231654 . - . ID=Phyra79667.1;Parent=Phyra79667;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 ensembl protein_coding_gene 232226 233938 . + . ID=Phyra79668;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000078;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 232226 233938 . + . ID=Phyra79668;Parent=Phyra79668;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 232226 233938 . + 0 ID=Phyra79668;Parent=Phyra79668;rank=1 scaffold_42 . exon 232226 233938 . + . ID=Phyra79668.1;Parent=Phyra79668;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 234056 235280 . - . ID=Phyra79669;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000079;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 234056 235280 . - . ID=Phyra79669;Parent=Phyra79669;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 234056 235085 . - 0 ID=Phyra79669;Parent=Phyra79669;rank=2 scaffold_42 . exon 234056 235085 . - . ID=Phyra79669.2;Parent=Phyra79669;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 235162 235280 . - 0 ID=Phyra79669;Parent=Phyra79669;rank=1 scaffold_42 . exon 224766 224839 . + . ID=Phyra95448.3;Parent=Phyra95448;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 . exon 224879 225221 . + . ID=Phyra95448.4;Parent=Phyra95448;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_42 . exon 225672 225871 . + . ID=Phyra95448.5;Parent=Phyra95448;constitutive=1;ensembl_phase=1;rank=5 scaffold_42 . exon 225899 226918 . + . ID=Phyra95448.6;Parent=Phyra95448;constitutive=1;rank=6 scaffold_42 . biological_region 237815 237815 0.999 + . logic_name=eponine scaffold_42 . biological_region 238150 238150 0.999 - . logic_name=eponine scaffold_42 . biological_region 238225 238232 0.999 + . logic_name=eponine scaffold_42 . biological_region 238294 238301 0.999 - . logic_name=eponine scaffold_42 . biological_region 238896 238899 0.999 + . logic_name=eponine scaffold_42 ensembl protein_coding_gene 242425 242709 . + . ID=Phyra48703;biotype=protein_coding;external_name=gwEuk.42.24.1;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 242425 242709 . + . ID=Phyra48703;Parent=Phyra48703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 242425 242537 . + 0 ID=Phyra48703;Parent=Phyra48703;rank=1 scaffold_42 . exon 242425 242537 . + . ID=Phyra48703.1;Parent=Phyra48703;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 242619 242709 . + 0 ID=Phyra48703;Parent=Phyra48703;rank=2 scaffold_42 . exon 242619 242709 . + . ID=Phyra48703.2;Parent=Phyra48703;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . exon 235162 235280 . - . ID=Phyra79669.1;Parent=Phyra79669;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 236262 237635 . + . ID=Phyra79670;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000080;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 236262 237635 . + . ID=Phyra79670;Parent=Phyra79670;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 236262 236399 . + 0 ID=Phyra79670;Parent=Phyra79670;rank=1 scaffold_42 . exon 236262 236399 . + . ID=Phyra79670.1;Parent=Phyra79670;constitutive=1;rank=1 scaffold_42 . CDS 236451 237635 . + 0 ID=Phyra79670;Parent=Phyra79670;rank=2 scaffold_42 . exon 236451 237635 . + . ID=Phyra79670.2;Parent=Phyra79670;constitutive=1;rank=2 scaffold_42 ensembl protein_coding_gene 237744 238415 . - . ID=Phyra95451;biotype=protein_coding;external_name=C_scaffold_42000042;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 237744 238415 . - . ID=Phyra95451;Parent=Phyra95451;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 237744 238193 . - 0 ID=Phyra95451;Parent=Phyra95451;rank=2 scaffold_42 . exon 237744 238193 . - . ID=Phyra95451.2;Parent=Phyra95451;constitutive=1;rank=2 scaffold_42 . CDS 238215 238415 . - 0 ID=Phyra95451;Parent=Phyra95451;rank=1 scaffold_42 . exon 238215 238415 . - . ID=Phyra95451.1;Parent=Phyra95451;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 238652 239014 . + . ID=Phyra95453;biotype=protein_coding;external_name=C_scaffold_42000044;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 238652 239014 . + . ID=Phyra95453;Parent=Phyra95453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 238652 239014 . + 0 ID=Phyra95453;Parent=Phyra95453;rank=1 scaffold_42 . exon 238652 239014 . + . ID=Phyra95453.1;Parent=Phyra95453;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 239188 240684 . - . ID=Phyra95456;biotype=protein_coding;external_name=C_scaffold_42000047;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 239188 240684 . - . ID=Phyra95456;Parent=Phyra95456;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 239188 240684 . - 0 ID=Phyra95456;Parent=Phyra95456;rank=1 scaffold_42 . exon 239188 240684 . - . ID=Phyra95456.1;Parent=Phyra95456;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 247675 248154 . - . ID=Phyra71723;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_42000009;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 247675 248154 . - . ID=Phyra71723;Parent=Phyra71723;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 247675 248154 . - 0 ID=Phyra71723;Parent=Phyra71723;rank=1 scaffold_42 . exon 247675 248154 . - . ID=Phyra71723.1;Parent=Phyra71723;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 245867 247522 . + . ID=Phyra79674;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000084;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 245867 247522 . + . ID=Phyra79674;Parent=Phyra79674;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 245867 246454 . + 0 ID=Phyra79674;Parent=Phyra79674;rank=1 scaffold_42 . exon 245867 246454 . + . ID=Phyra79674.1;Parent=Phyra79674;constitutive=1;rank=1 scaffold_42 . CDS 246518 247133 . + 0 ID=Phyra79674;Parent=Phyra79674;rank=2 scaffold_42 . exon 246518 247133 . + . ID=Phyra79674.2;Parent=Phyra79674;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_42 . CDS 247199 247281 . + 0 ID=Phyra79674;Parent=Phyra79674;rank=3 scaffold_42 . exon 247199 247281 . + . ID=Phyra79674.3;Parent=Phyra79674;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 247341 247522 . + 0 ID=Phyra79674;Parent=Phyra79674;rank=4 scaffold_42 . exon 247341 247522 . + . ID=Phyra79674.4;Parent=Phyra79674;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_42 ensembl protein_coding_gene 248349 249506 . - . ID=Phyra79676;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000086;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 248349 249506 . - . ID=Phyra79676;Parent=Phyra79676;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 248349 249506 . - 0 ID=Phyra79676;Parent=Phyra79676;rank=1 scaffold_42 . exon 248349 249506 . - . ID=Phyra79676.1;Parent=Phyra79676;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 249764 250438 . + . ID=Phyra79677;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000087;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 249764 250438 . + . ID=Phyra79677;Parent=Phyra79677;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 249764 250438 . + 0 ID=Phyra79677;Parent=Phyra79677;rank=1 scaffold_42 . exon 249764 250438 . + . ID=Phyra79677.1;Parent=Phyra79677;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 250652 252316 . - . ID=Phyra79678;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000088;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 250652 252316 . - . ID=Phyra79678;Parent=Phyra79678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 250652 252316 . - 0 ID=Phyra79678;Parent=Phyra79678;rank=1 scaffold_42 . exon 250652 252316 . - . ID=Phyra79678.1;Parent=Phyra79678;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 262571 264447 . + . ID=Phyra48713;biotype=protein_coding;external_name=gwEuk.42.34.1;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 262571 264447 . + . ID=Phyra48713;Parent=Phyra48713;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 262571 263527 . + 0 ID=Phyra48713;Parent=Phyra48713;rank=1 scaffold_42 . exon 262571 263527 . + . ID=Phyra48713.1;Parent=Phyra48713;constitutive=1;rank=1 scaffold_42 . CDS 263594 264004 . + 0 ID=Phyra48713;Parent=Phyra48713;rank=2 scaffold_42 . exon 263594 264004 . + . ID=Phyra48713.2;Parent=Phyra48713;constitutive=1;rank=2 scaffold_42 . CDS 264073 264306 . + 0 ID=Phyra48713;Parent=Phyra48713;rank=3 scaffold_42 . CDS 264370 264447 . + 0 ID=Phyra48713;Parent=Phyra48713;rank=4 scaffold_42 . repeat_region 268294 268343 . ? . description=dust scaffold_42 . biological_region 268556 268560 0.999 - . logic_name=eponine scaffold_42 . biological_region 268607 268611 0.999 - . logic_name=eponine scaffold_42 . repeat_region 269531 269580 . ? . description=dust scaffold_42 . biological_region 273041 273044 0.999 - . logic_name=eponine scaffold_42 . exon 264073 264306 . + . ID=Phyra48713.3;Parent=Phyra48713;constitutive=1;rank=3 scaffold_42 . exon 264370 264447 . + . ID=Phyra48713.4;Parent=Phyra48713;constitutive=1;rank=4 scaffold_42 ensembl protein_coding_gene 268409 268897 . - . ID=Phyra79679;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000089;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 268409 268897 . - . ID=Phyra79679;Parent=Phyra79679;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 268409 268897 . - 0 ID=Phyra79679;Parent=Phyra79679;rank=1 scaffold_42 . exon 268409 268897 . - . ID=Phyra79679.1;Parent=Phyra79679;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 273185 274951 . + . ID=Phyra79680;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000090;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 273185 274951 . + . ID=Phyra79680;Parent=Phyra79680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 273185 274951 . + 0 ID=Phyra79680;Parent=Phyra79680;rank=1 scaffold_42 . exon 273185 274951 . + . ID=Phyra79680.1;Parent=Phyra79680;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 265307 265744 . + . ID=Phyra95458;biotype=protein_coding;external_name=C_scaffold_42000049;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 265307 265744 . + . ID=Phyra95458;Parent=Phyra95458;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 265307 265368 . + 0 ID=Phyra95458;Parent=Phyra95458;rank=1 scaffold_42 . exon 265307 265368 . + . ID=Phyra95458.1;Parent=Phyra95458;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 265450 265744 . + 0 ID=Phyra95458;Parent=Phyra95458;rank=2 scaffold_42 . exon 265450 265744 . + . ID=Phyra95458.2;Parent=Phyra95458;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 ensembl protein_coding_gene 275110 277887 . - . ID=Phyra79681;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000091;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 275110 277887 . - . ID=Phyra79681;Parent=Phyra79681;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 275110 276281 . - 0 ID=Phyra79681;Parent=Phyra79681;rank=3 scaffold_42 . exon 275110 276281 . - . ID=Phyra79681.3;Parent=Phyra79681;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 276327 277353 . - 0 ID=Phyra79681;Parent=Phyra79681;rank=2 scaffold_42 . exon 276327 277353 . - . ID=Phyra79681.2;Parent=Phyra79681;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_42 . CDS 277432 277887 . - 0 ID=Phyra79681;Parent=Phyra79681;rank=1 scaffold_42 . exon 277432 277887 . - . ID=Phyra79681.1;Parent=Phyra79681;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 279599 280633 . + . ID=Phyra79682;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000092;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 279599 280633 . + . ID=Phyra79682;Parent=Phyra79682;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 279599 280633 . + 0 ID=Phyra79682;Parent=Phyra79682;rank=1 scaffold_42 . exon 279599 280633 . + . ID=Phyra79682.1;Parent=Phyra79682;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 282251 283285 . + . ID=Phyra79683;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000093;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 282251 283285 . + . ID=Phyra79683;Parent=Phyra79683;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 282251 283285 . + 0 ID=Phyra79683;Parent=Phyra79683;rank=1 scaffold_42 . exon 282251 283285 . + . ID=Phyra79683.1;Parent=Phyra79683;constitutive=1;rank=1 scaffold_42 . repeat_region 283363 283371 . ? . description=dust scaffold_42 . biological_region 287316 287316 0.999 + . logic_name=eponine scaffold_42 . biological_region 287865 287871 0.999 + . logic_name=eponine scaffold_42 . biological_region 287959 287959 0.999 + . logic_name=eponine scaffold_42 . biological_region 288009 288012 0.999 - . logic_name=eponine scaffold_42 . biological_region 288024 288031 0.999 - . logic_name=eponine scaffold_42 . biological_region 288030 288036 0.999 + . logic_name=eponine scaffold_42 . biological_region 288046 288052 0.999 - . logic_name=eponine scaffold_42 . biological_region 288080 288089 0.999 + . logic_name=eponine scaffold_42 . biological_region 288127 288128 0.999 - . logic_name=eponine scaffold_42 . biological_region 288224 288225 0.999 - . logic_name=eponine scaffold_42 . biological_region 288941 288946 0.999 - . logic_name=eponine scaffold_42 . biological_region 291195 291200 0.999 + . logic_name=eponine scaffold_42 . biological_region 292361 292362 0.999 - . logic_name=eponine scaffold_42 . biological_region 292493 292497 0.999 - . logic_name=eponine scaffold_42 . biological_region 292496 292500 0.999 + . logic_name=eponine scaffold_42 . biological_region 292529 292530 0.999 - . logic_name=eponine scaffold_42 . biological_region 292551 292553 0.999 - . logic_name=eponine scaffold_42 . biological_region 292574 292584 0.999 + . logic_name=eponine scaffold_42 . biological_region 292585 292589 0.999 - . logic_name=eponine scaffold_42 . biological_region 292613 292618 0.999 - . logic_name=eponine scaffold_42 . biological_region 292624 292627 0.999 - . logic_name=eponine scaffold_42 . biological_region 292632 292637 0.999 - . logic_name=eponine scaffold_42 . biological_region 292649 292653 0.999 - . logic_name=eponine scaffold_42 . repeat_region 292864 292878 . ? . description=dust scaffold_42 ensembl protein_coding_gene 283505 286780 . - . ID=Phyra79684;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000094;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 283505 286780 . - . ID=Phyra79684;Parent=Phyra79684;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 283505 286780 . - 0 ID=Phyra79684;Parent=Phyra79684;rank=1 scaffold_42 . exon 283505 286780 . - . ID=Phyra79684.1;Parent=Phyra79684;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 287896 290721 . + . ID=Phyra79685;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000095;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 287896 290721 . + . ID=Phyra79685;Parent=Phyra79685;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 287896 290721 . + 0 ID=Phyra79685;Parent=Phyra79685;rank=1 scaffold_42 . exon 287896 290721 . + . ID=Phyra79685.1;Parent=Phyra79685;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 291314 292852 . - . ID=Phyra79686;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000096;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 291314 292852 . - . ID=Phyra79686;Parent=Phyra79686;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 291314 292706 . - 0 ID=Phyra79686;Parent=Phyra79686;rank=2 scaffold_42 . exon 291314 292706 . - . ID=Phyra79686.2;Parent=Phyra79686;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 292776 292852 . - 0 ID=Phyra79686;Parent=Phyra79686;rank=1 scaffold_42 . exon 292776 292852 . - . ID=Phyra79686.1;Parent=Phyra79686;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . repeat_region 302778 302822 . ? . description=trf scaffold_42 ensembl protein_coding_gene 294397 297741 . + . ID=Phyra79687;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000097;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 294397 297741 . + . ID=Phyra79687;Parent=Phyra79687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 294397 297741 . + 0 ID=Phyra79687;Parent=Phyra79687;rank=1 scaffold_42 . exon 294397 297741 . + . ID=Phyra79687.1;Parent=Phyra79687;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 298395 300716 . - . ID=Phyra79688;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000098;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 298395 300716 . - . ID=Phyra79688;Parent=Phyra79688;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 298395 300716 . - 0 ID=Phyra79688;Parent=Phyra79688;rank=1 scaffold_42 . exon 298395 300716 . - . ID=Phyra79688.1;Parent=Phyra79688;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 301419 302026 . - . ID=Phyra79689;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000099;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 301419 302026 . - . ID=Phyra79689;Parent=Phyra79689;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 301419 301750 . - 0 ID=Phyra79689;Parent=Phyra79689;rank=2 scaffold_42 . exon 301419 301750 . - . ID=Phyra79689.2;Parent=Phyra79689;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 301966 302026 . - 0 ID=Phyra79689;Parent=Phyra79689;rank=1 scaffold_42 . exon 301966 302026 . - . ID=Phyra79689.1;Parent=Phyra79689;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . biological_region 304733 304735 0.999 - . logic_name=eponine scaffold_42 . biological_region 308921 308923 0.999 - . logic_name=eponine scaffold_42 . biological_region 309386 309391 0.999 - . logic_name=eponine scaffold_42 ensembl protein_coding_gene 307128 309413 . - . ID=Phyra79690;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000100;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 307128 309413 . - . ID=Phyra79690;Parent=Phyra79690;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 307128 308443 . - 0 ID=Phyra79690;Parent=Phyra79690;rank=2 scaffold_42 . exon 307128 308443 . - . ID=Phyra79690.2;Parent=Phyra79690;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 308690 309413 . - 0 ID=Phyra79690;Parent=Phyra79690;rank=1 scaffold_42 . exon 308690 309413 . - . ID=Phyra79690.1;Parent=Phyra79690;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 ensembl protein_coding_gene 310312 312078 . + . ID=Phyra79691;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000101;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 310312 312078 . + . ID=Phyra79691;Parent=Phyra79691;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 310312 312078 . + 0 ID=Phyra79691;Parent=Phyra79691;rank=1 scaffold_42 . exon 310312 312078 . + . ID=Phyra79691.1;Parent=Phyra79691;constitutive=1;rank=1 scaffold_42 . repeat_region 313605 313642 . ? . description=trf scaffold_42 . repeat_region 313842 313892 . ? . description=trf scaffold_42 . repeat_region 316180 317276 . ? . description=trf scaffold_42 ensembl protein_coding_gene 313253 314136 . - . ID=Phyra79692;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000102;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 313253 314136 . - . ID=Phyra79692;Parent=Phyra79692;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 313253 313359 . - 0 ID=Phyra79692;Parent=Phyra79692;rank=3 scaffold_42 . exon 313253 313359 . - . ID=Phyra79692.3;Parent=Phyra79692;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 313444 314005 . - 0 ID=Phyra79692;Parent=Phyra79692;rank=2 scaffold_42 . exon 313444 314005 . - . ID=Phyra79692.2;Parent=Phyra79692;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_42 . CDS 314080 314136 . - 0 ID=Phyra79692;Parent=Phyra79692;rank=1 scaffold_42 . exon 314080 314136 . - . ID=Phyra79692.1;Parent=Phyra79692;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 315343 319479 . + . ID=Phyra79693;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000103;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 315343 319479 . + . ID=Phyra79693;Parent=Phyra79693;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 315343 315825 . + 0 ID=Phyra79693;Parent=Phyra79693;rank=1 scaffold_42 . exon 315343 315825 . + . ID=Phyra79693.1;Parent=Phyra79693;constitutive=1;rank=1 scaffold_42 . CDS 316195 319479 . + 0 ID=Phyra79693;Parent=Phyra79693;rank=2 scaffold_42 . exon 316195 319479 . + . ID=Phyra79693.2;Parent=Phyra79693;constitutive=1;rank=2 scaffold_42 ensembl protein_coding_gene 319670 321062 . + . ID=Phyra79694;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000104;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 319670 321062 . + . ID=Phyra79694;Parent=Phyra79694;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 319670 320602 . + 0 ID=Phyra79694;Parent=Phyra79694;rank=1 scaffold_42 . exon 319670 320602 . + . ID=Phyra79694.1;Parent=Phyra79694;constitutive=1;rank=1 scaffold_42 . CDS 320754 321062 . + 0 ID=Phyra79694;Parent=Phyra79694;rank=2 scaffold_42 . exon 320754 321062 . + . ID=Phyra79694.2;Parent=Phyra79694;constitutive=1;rank=2 scaffold_42 ensembl protein_coding_gene 322008 322817 . - . ID=Phyra79695;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000105;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 322008 322817 . - . ID=Phyra79695;Parent=Phyra79695;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 322008 322817 . - 0 ID=Phyra79695;Parent=Phyra79695;rank=1 scaffold_42 . exon 322008 322817 . - . ID=Phyra79695.1;Parent=Phyra79695;constitutive=1;rank=1 scaffold_42 . biological_region 330034 330037 0.999 + . logic_name=eponine scaffold_42 . biological_region 330111 330114 0.999 - . logic_name=eponine scaffold_42 . biological_region 331386 331388 0.999 + . logic_name=eponine scaffold_42 ensembl protein_coding_gene 329696 332836 . - . ID=Phyra79696;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000106;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 329696 332836 . - . ID=Phyra79696;Parent=Phyra79696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 329696 332836 . - 0 ID=Phyra79696;Parent=Phyra79696;rank=1 scaffold_42 . exon 329696 332836 . - . ID=Phyra79696.1;Parent=Phyra79696;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 333754 335156 . + . ID=Phyra79697;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000107;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 333754 335156 . + . ID=Phyra79697;Parent=Phyra79697;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 333754 334390 . + 0 ID=Phyra79697;Parent=Phyra79697;rank=1 scaffold_42 . exon 333754 334390 . + . ID=Phyra79697.1;Parent=Phyra79697;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . CDS 334414 335156 . + 0 ID=Phyra79697;Parent=Phyra79697;rank=2 scaffold_42 . exon 334414 335156 . + . ID=Phyra79697.2;Parent=Phyra79697;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 ensembl protein_coding_gene 335911 338698 . + . ID=Phyra79698;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000108;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 335911 338698 . + . ID=Phyra79698;Parent=Phyra79698;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 335911 335964 . + 0 ID=Phyra79698;Parent=Phyra79698;rank=1 scaffold_42 . exon 335911 335964 . + . ID=Phyra79698.1;Parent=Phyra79698;constitutive=1;rank=1 scaffold_42 . CDS 336041 338698 . + 0 ID=Phyra79698;Parent=Phyra79698;rank=2 scaffold_42 . exon 336041 338698 . + . ID=Phyra79698.2;Parent=Phyra79698;constitutive=1;rank=2 scaffold_42 ensembl protein_coding_gene 340365 343802 . + . ID=Phyra79699;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000109;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 340365 343802 . + . ID=Phyra79699;Parent=Phyra79699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 340365 343302 . + 0 ID=Phyra79699;Parent=Phyra79699;rank=1 scaffold_42 . exon 340365 343302 . + . ID=Phyra79699.1;Parent=Phyra79699;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . CDS 343456 343802 . + 0 ID=Phyra79699;Parent=Phyra79699;rank=2 scaffold_42 . biological_region 342688 342691 0.999 + . logic_name=eponine scaffold_42 . biological_region 345018 345021 0.999 + . logic_name=eponine scaffold_42 . biological_region 346493 346497 0.999 - . logic_name=eponine scaffold_42 . biological_region 347944 347944 0.999 - . logic_name=eponine scaffold_42 . biological_region 349584 349587 0.999 - . logic_name=eponine scaffold_42 . biological_region 349638 349646 0.999 + . logic_name=eponine scaffold_42 ensembl protein_coding_gene 346530 347027 . + . ID=Phyra71724;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_42000010;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 346530 347027 . + . ID=Phyra71724;Parent=Phyra71724;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 346530 347027 . + 0 ID=Phyra71724;Parent=Phyra71724;rank=1 scaffold_42 . exon 346530 347027 . + . ID=Phyra71724.1;Parent=Phyra71724;constitutive=1;rank=1 scaffold_42 . exon 343456 343802 . + . ID=Phyra79699.2;Parent=Phyra79699;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 ensembl protein_coding_gene 343916 345157 . - . ID=Phyra79700;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000110;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 343916 345157 . - . ID=Phyra79700;Parent=Phyra79700;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 343916 345157 . - 0 ID=Phyra79700;Parent=Phyra79700;rank=1 scaffold_42 . exon 343916 345157 . - . ID=Phyra79700.1;Parent=Phyra79700;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 347626 349215 . - . ID=Phyra79702;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000112;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 347626 349215 . - . ID=Phyra79702;Parent=Phyra79702;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 347626 349215 . - 0 ID=Phyra79702;Parent=Phyra79702;rank=1 scaffold_42 . exon 347626 349215 . - . ID=Phyra79702.1;Parent=Phyra79702;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 349504 350166 . - . ID=Phyra79703;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000113;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 349504 350166 . - . ID=Phyra79703;Parent=Phyra79703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 349504 350166 . - 0 ID=Phyra79703;Parent=Phyra79703;rank=1 scaffold_42 . exon 349504 350166 . - . ID=Phyra79703.1;Parent=Phyra79703;constitutive=1;rank=1 scaffold_42 . repeat_region 353742 353926 . ? . description=trf scaffold_42 . repeat_region 353750 354217 . ? . description=trf scaffold_42 . repeat_region 353813 354063 . ? . description=trf scaffold_42 . repeat_region 353813 354287 . ? . description=trf scaffold_42 . repeat_region 353876 353973 . ? . description=trf scaffold_42 . repeat_region 353993 354073 . ? . description=trf scaffold_42 . repeat_region 354020 354189 . ? . description=trf scaffold_42 . repeat_region 354146 354225 . ? . description=trf scaffold_42 . repeat_region 354173 354343 . ? . description=trf scaffold_42 . repeat_region 354237 354465 . ? . description=trf scaffold_42 . repeat_region 354300 354379 . ? . description=trf scaffold_42 . repeat_region 354390 354465 . ? . description=trf scaffold_42 . repeat_region 359342 359460 . ? . description=trf scaffold_42 . repeat_region 359788 359842 . ? . description=trf scaffold_42 . repeat_region 360236 360510 . ? . description=dust scaffold_42 ensembl protein_coding_gene 352030 352836 . + . ID=Phyra71725;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_42000011;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 352030 352836 . + . ID=Phyra71725;Parent=Phyra71725;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 352030 352836 . + 0 ID=Phyra71725;Parent=Phyra71725;rank=1 scaffold_42 . exon 352030 352836 . + . ID=Phyra71725.1;Parent=Phyra71725;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 355165 357150 . + . ID=Phyra79705;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000115;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 355165 357150 . + . ID=Phyra79705;Parent=Phyra79705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 355165 355308 . + 0 ID=Phyra79705;Parent=Phyra79705;rank=1 scaffold_42 . exon 355165 355308 . + . ID=Phyra79705.1;Parent=Phyra79705;constitutive=1;rank=1 scaffold_42 . CDS 355472 355525 . + 0 ID=Phyra79705;Parent=Phyra79705;rank=2 scaffold_42 . exon 355472 355525 . + . ID=Phyra79705.2;Parent=Phyra79705;constitutive=1;rank=2 scaffold_42 . CDS 355603 355930 . + 0 ID=Phyra79705;Parent=Phyra79705;rank=3 scaffold_42 . exon 355603 355930 . + . ID=Phyra79705.3;Parent=Phyra79705;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_42 . CDS 356511 356787 . + 0 ID=Phyra79705;Parent=Phyra79705;rank=4 scaffold_42 . exon 356511 356787 . + . ID=Phyra79705.4;Parent=Phyra79705;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_42 . CDS 356859 357150 . + 0 ID=Phyra79705;Parent=Phyra79705;rank=5 scaffold_42 . exon 356859 357150 . + . ID=Phyra79705.5;Parent=Phyra79705;constitutive=1;ensembl_phase=2;rank=5 scaffold_42 ensembl protein_coding_gene 358385 360785 . + . ID=Phyra79706;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000116;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 358385 360785 . + . ID=Phyra79706;Parent=Phyra79706;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 358385 358759 . + 0 ID=Phyra79706;Parent=Phyra79706;rank=1 scaffold_42 . exon 358385 358759 . + . ID=Phyra79706.1;Parent=Phyra79706;constitutive=1;rank=1 scaffold_42 . CDS 358858 358865 . + 0 ID=Phyra79706;Parent=Phyra79706;rank=2 scaffold_42 . exon 358858 358865 . + . ID=Phyra79706.2;Parent=Phyra79706;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_42 . CDS 359043 359073 . + 0 ID=Phyra79706;Parent=Phyra79706;rank=3 scaffold_42 . exon 359043 359073 . + . ID=Phyra79706.3;Parent=Phyra79706;constitutive=1;ensembl_phase=2;rank=3 scaffold_42 . CDS 359213 359652 . + 0 ID=Phyra79706;Parent=Phyra79706;rank=4 scaffold_42 . exon 359213 359652 . + . ID=Phyra79706.4;Parent=Phyra79706;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_42 . CDS 359684 360227 . + 0 ID=Phyra79706;Parent=Phyra79706;rank=5 scaffold_42 . exon 359684 360227 . + . ID=Phyra79706.5;Parent=Phyra79706;constitutive=1;ensembl_phase=2;rank=5 scaffold_42 . CDS 360759 360785 . + 0 ID=Phyra79706;Parent=Phyra79706;rank=6 scaffold_42 . exon 360759 360785 . + . ID=Phyra79706.6;Parent=Phyra79706;constitutive=1;rank=6 scaffold_42 . biological_region 362705 362706 0.999 - . logic_name=eponine scaffold_42 . biological_region 362761 362763 0.999 + . logic_name=eponine scaffold_42 . biological_region 363058 363062 0.999 + . logic_name=eponine scaffold_42 . biological_region 363187 363188 0.999 - . logic_name=eponine scaffold_42 . biological_region 365472 365474 0.999 + . logic_name=eponine scaffold_42 ensembl protein_coding_gene 361743 362735 . - . ID=Phyra48733;biotype=protein_coding;external_name=gwEuk.42.54.1;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 361743 362735 . - . ID=Phyra48733;Parent=Phyra48733;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 361743 362735 . - 0 ID=Phyra48733;Parent=Phyra48733;rank=1 scaffold_42 . exon 361743 362735 . - . ID=Phyra48733.1;Parent=Phyra48733;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 366372 367620 . + . ID=Phyra48735;biotype=protein_coding;external_name=gwEuk.42.56.1;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 366372 367620 . + . ID=Phyra48735;Parent=Phyra48735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 366372 366584 . + 0 ID=Phyra48735;Parent=Phyra48735;rank=1 scaffold_42 . exon 366372 366584 . + . ID=Phyra48735.1;Parent=Phyra48735;constitutive=1;rank=1 scaffold_42 . CDS 366649 367410 . + 0 ID=Phyra48735;Parent=Phyra48735;rank=2 scaffold_42 . exon 366649 367410 . + . ID=Phyra48735.2;Parent=Phyra48735;constitutive=1;rank=2 scaffold_42 . CDS 367504 367620 . + 0 ID=Phyra48735;Parent=Phyra48735;rank=3 scaffold_42 . exon 367504 367620 . + . ID=Phyra48735.3;Parent=Phyra48735;constitutive=1;rank=3 scaffold_42 ensembl protein_coding_gene 370470 372255 . - . ID=Phyra79709;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000119;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 370470 372255 . - . ID=Phyra79709;Parent=Phyra79709;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 370470 371043 . - 0 ID=Phyra79709;Parent=Phyra79709;rank=2 scaffold_42 . exon 370470 371043 . - . ID=Phyra79709.2;Parent=Phyra79709;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 371105 372255 . - 0 ID=Phyra79709;Parent=Phyra79709;rank=1 scaffold_42 . exon 371105 372255 . - . ID=Phyra79709.1;Parent=Phyra79709;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 367816 370321 . + . ID=Phyra95460;biotype=protein_coding;external_name=C_scaffold_42000051;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 367816 370321 . + . ID=Phyra95460;Parent=Phyra95460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 367816 368382 . + 0 ID=Phyra95460;Parent=Phyra95460;rank=1 scaffold_42 . exon 367816 368382 . + . ID=Phyra95460.1;Parent=Phyra95460;constitutive=1;rank=1 scaffold_42 . CDS 368404 369612 . + 0 ID=Phyra95460;Parent=Phyra95460;rank=2 scaffold_42 . exon 368404 369612 . + . ID=Phyra95460.2;Parent=Phyra95460;constitutive=1;rank=2 scaffold_42 . CDS 369693 369972 . + 0 ID=Phyra95460;Parent=Phyra95460;rank=3 scaffold_42 . exon 369693 369972 . + . ID=Phyra95460.3;Parent=Phyra95460;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_42 . CDS 369994 370194 . + 0 ID=Phyra95460;Parent=Phyra95460;rank=4 scaffold_42 . exon 369994 370194 . + . ID=Phyra95460.4;Parent=Phyra95460;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_42 . CDS 370272 370321 . + 0 ID=Phyra95460;Parent=Phyra95460;rank=5 scaffold_42 . exon 370272 370321 . + . ID=Phyra95460.5;Parent=Phyra95460;constitutive=1;ensembl_phase=1;rank=5 scaffold_42 . repeat_region 372043 372087 . ? . description=trf scaffold_42 . repeat_region 373430 373440 . ? . description=dust scaffold_42 . repeat_region 374189 374196 . ? . description=dust scaffold_42 . repeat_region 379302 379328 . ? . description=trf scaffold_42 . repeat_region 379492 379521 . ? . description=trf scaffold_42 . repeat_region 379580 379640 . ? . description=trf scaffold_42 . repeat_region 379595 379628 . ? . description=trf scaffold_42 . repeat_region 379600 379662 . ? . description=dust scaffold_42 ensembl protein_coding_gene 377812 379111 . + . ID=Phyra79710;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000120;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 377812 379111 . + . ID=Phyra79710;Parent=Phyra79710;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 377812 378606 . + 0 ID=Phyra79710;Parent=Phyra79710;rank=1 scaffold_42 . exon 377812 378606 . + . ID=Phyra79710.1;Parent=Phyra79710;constitutive=1;rank=1 scaffold_42 . CDS 378679 378821 . + 0 ID=Phyra79710;Parent=Phyra79710;rank=2 scaffold_42 . exon 378679 378821 . + . ID=Phyra79710.2;Parent=Phyra79710;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_42 . CDS 378886 378946 . + 0 ID=Phyra79710;Parent=Phyra79710;rank=3 scaffold_42 . exon 378886 378946 . + . ID=Phyra79710.3;Parent=Phyra79710;constitutive=1;ensembl_phase=2;rank=3 scaffold_42 . CDS 379010 379111 . + 0 ID=Phyra79710;Parent=Phyra79710;rank=4 scaffold_42 . exon 379010 379111 . + . ID=Phyra79710.4;Parent=Phyra79710;constitutive=1;rank=4 scaffold_42 ensembl protein_coding_gene 379273 379839 . - . ID=Phyra79711;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000121;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 379273 379839 . - . ID=Phyra79711;Parent=Phyra79711;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 379273 379738 . - 0 ID=Phyra79711;Parent=Phyra79711;rank=2 scaffold_42 . exon 379273 379738 . - . ID=Phyra79711.2;Parent=Phyra79711;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 379808 379839 . - 0 ID=Phyra79711;Parent=Phyra79711;rank=1 scaffold_42 . exon 379808 379839 . - . ID=Phyra79711.1;Parent=Phyra79711;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 380044 381218 . + . ID=Phyra79712;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000122;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 380044 381218 . + . ID=Phyra79712;Parent=Phyra79712;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 380044 380220 . + 0 ID=Phyra79712;Parent=Phyra79712;rank=1 scaffold_42 . exon 380044 380220 . + . ID=Phyra79712.1;Parent=Phyra79712;constitutive=1;rank=1 scaffold_42 . CDS 380287 380424 . + 0 ID=Phyra79712;Parent=Phyra79712;rank=2 scaffold_42 . exon 380287 380424 . + . ID=Phyra79712.2;Parent=Phyra79712;constitutive=1;rank=2 scaffold_42 . CDS 380498 380691 . + 0 ID=Phyra79712;Parent=Phyra79712;rank=3 scaffold_42 . exon 380498 380691 . + . ID=Phyra79712.3;Parent=Phyra79712;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_42 . CDS 380753 381218 . + 0 ID=Phyra79712;Parent=Phyra79712;rank=4 scaffold_42 . exon 380753 381218 . + . ID=Phyra79712.4;Parent=Phyra79712;constitutive=1;ensembl_phase=2;rank=4 scaffold_42 . biological_region 382159 382163 0.999 + . logic_name=eponine scaffold_42 . biological_region 382234 382239 0.999 - . logic_name=eponine scaffold_42 . biological_region 385543 385548 0.999 + . logic_name=eponine scaffold_42 . biological_region 385807 385810 0.999 - . logic_name=eponine scaffold_42 ensembl protein_coding_gene 381547 381894 . - . ID=Phyra48748;biotype=protein_coding;external_name=gwEuk.42.69.1;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 381547 381894 . - . ID=Phyra48748;Parent=Phyra48748;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 381547 381683 . - 0 ID=Phyra48748;Parent=Phyra48748;rank=2 scaffold_42 . exon 381547 381683 . - . ID=Phyra48748.2;Parent=Phyra48748;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 381759 381894 . - 0 ID=Phyra48748;Parent=Phyra48748;rank=1 scaffold_42 . exon 381759 381894 . - . ID=Phyra48748.1;Parent=Phyra48748;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 ensembl protein_coding_gene 382479 384650 . - . ID=Phyra79713;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000123;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 382479 384650 . - . ID=Phyra79713;Parent=Phyra79713;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 382479 382906 . - 0 ID=Phyra79713;Parent=Phyra79713;rank=5 scaffold_42 . exon 382479 382906 . - . ID=Phyra79713.5;Parent=Phyra79713;constitutive=1;ensembl_phase=1;rank=5 scaffold_42 . CDS 383111 383114 . - 0 ID=Phyra79713;Parent=Phyra79713;rank=4 scaffold_42 . exon 383111 383114 . - . ID=Phyra79713.4;Parent=Phyra79713;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_42 . CDS 383248 384298 . - 0 ID=Phyra79713;Parent=Phyra79713;rank=3 scaffold_42 . exon 383248 384298 . - . ID=Phyra79713.3;Parent=Phyra79713;constitutive=1;ensembl_phase=2;rank=3 scaffold_42 . CDS 384356 384486 . - 0 ID=Phyra79713;Parent=Phyra79713;rank=2 scaffold_42 . exon 384356 384486 . - . ID=Phyra79713.2;Parent=Phyra79713;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_42 . CDS 384564 384650 . - 0 ID=Phyra79713;Parent=Phyra79713;rank=1 scaffold_42 . exon 384564 384650 . - . ID=Phyra79713.1;Parent=Phyra79713;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 385502 388694 . + . ID=Phyra79714;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000124;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 385502 388694 . + . ID=Phyra79714;Parent=Phyra79714;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 385502 387279 . + 0 ID=Phyra79714;Parent=Phyra79714;rank=1 scaffold_42 . exon 385502 387279 . + . ID=Phyra79714.1;Parent=Phyra79714;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 388280 388694 . + 0 ID=Phyra79714;Parent=Phyra79714;rank=2 scaffold_42 . exon 388280 388694 . + . ID=Phyra79714.2;Parent=Phyra79714;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 ensembl protein_coding_gene 389107 389565 . - . ID=Phyra79715;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000125;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 389107 389565 . - . ID=Phyra79715;Parent=Phyra79715;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 389107 389565 . - 0 ID=Phyra79715;Parent=Phyra79715;rank=1 scaffold_42 . exon 389107 389565 . - . ID=Phyra79715.1;Parent=Phyra79715;constitutive=1;rank=1 scaffold_42 . repeat_region 389835 407867 . ? . description=dust scaffold_42 ensembl protein_coding_gene 408769 410871 . + . ID=Phyra79716;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000126;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 408769 410871 . + . ID=Phyra79716;Parent=Phyra79716;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 408769 408904 . + 0 ID=Phyra79716;Parent=Phyra79716;rank=1 scaffold_42 . exon 408769 408904 . + . ID=Phyra79716.1;Parent=Phyra79716;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . CDS 409043 410871 . + 0 ID=Phyra79716;Parent=Phyra79716;rank=2 scaffold_42 . exon 409043 410871 . + . ID=Phyra79716.2;Parent=Phyra79716;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . repeat_region 411426 411579 . ? . description=dust scaffold_42 . biological_region 416929 416931 0.999 + . logic_name=eponine scaffold_42 . repeat_region 418487 418499 . ? . description=dust scaffold_42 ensembl protein_coding_gene 410982 416231 . - . ID=Phyra79717;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000127;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 410982 416231 . - . ID=Phyra79717;Parent=Phyra79717;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 410982 411230 . - 0 ID=Phyra79717;Parent=Phyra79717;rank=9 scaffold_42 . exon 410982 411230 . - . ID=Phyra79717.9;Parent=Phyra79717;constitutive=1;rank=9 scaffold_42 . CDS 411611 412857 . - 0 ID=Phyra79717;Parent=Phyra79717;rank=8 scaffold_42 . exon 411611 412857 . - . ID=Phyra79717.8;Parent=Phyra79717;constitutive=1;ensembl_phase=1;rank=8 scaffold_42 . CDS 412912 413238 . - 0 ID=Phyra79717;Parent=Phyra79717;rank=7 scaffold_42 . exon 412912 413238 . - . ID=Phyra79717.7;Parent=Phyra79717;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_42 . CDS 413442 413701 . - 0 ID=Phyra79717;Parent=Phyra79717;rank=6 scaffold_42 . exon 413442 413701 . - . ID=Phyra79717.6;Parent=Phyra79717;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_42 . CDS 413848 413947 . - 0 ID=Phyra79717;Parent=Phyra79717;rank=5 scaffold_42 . exon 413848 413947 . - . ID=Phyra79717.5;Parent=Phyra79717;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_42 . CDS 414200 415805 . - 0 ID=Phyra79717;Parent=Phyra79717;rank=4 scaffold_42 . exon 414200 415805 . - . ID=Phyra79717.4;Parent=Phyra79717;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_42 . CDS 415876 415986 . - 0 ID=Phyra79717;Parent=Phyra79717;rank=3 scaffold_42 . exon 415876 415986 . - . ID=Phyra79717.3;Parent=Phyra79717;constitutive=1;rank=3 scaffold_42 . CDS 416046 416142 . - 0 ID=Phyra79717;Parent=Phyra79717;rank=2 scaffold_42 . exon 416046 416142 . - . ID=Phyra79717.2;Parent=Phyra79717;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 416200 416231 . - 0 ID=Phyra79717;Parent=Phyra79717;rank=1 scaffold_42 . exon 416200 416231 . - . ID=Phyra79717.1;Parent=Phyra79717;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 416700 417746 . - . ID=Phyra79718;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000128;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 416700 417746 . - . ID=Phyra79718;Parent=Phyra79718;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 416700 417746 . - 0 ID=Phyra79718;Parent=Phyra79718;rank=1 scaffold_42 . exon 416700 417746 . - . ID=Phyra79718.1;Parent=Phyra79718;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 419459 419983 . + . ID=Phyra79719;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_42000129;logic_name=jgi_phyra1 scaffold_42 ensembl transcript 419459 419983 . + . ID=Phyra79719;Parent=Phyra79719;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_42 . CDS 419459 419983 . + 0 ID=Phyra79719;Parent=Phyra79719;rank=1 scaffold_42 . exon 419459 419983 . + . ID=Phyra79719.1;Parent=Phyra79719;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_41 1 428575 scaffold_41 . repeat_region 282 289 . ? . description=dust scaffold_41 . repeat_region 750 4216 . ? . description=dust scaffold_41 . repeat_region 7846 7866 . ? . description=dust scaffold_41 . repeat_region 10993 11170 . - . description=Polinton-1_PI scaffold_41 . repeat_region 11248 11512 . + . description=Polinton-1_PI scaffold_41 . biological_region 17334 17336 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 11345 11681 . + . ID=Phyra79470;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000001;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 11345 11681 . + . ID=Phyra79470;Parent=Phyra79470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 11345 11554 . + 0 ID=Phyra79470;Parent=Phyra79470;rank=1 scaffold_41 . exon 11345 11554 . + . ID=Phyra79470.1;Parent=Phyra79470;constitutive=1;rank=1 scaffold_41 . CDS 11589 11681 . + 0 ID=Phyra79470;Parent=Phyra79470;rank=2 scaffold_41 . exon 11589 11681 . + . ID=Phyra79470.2;Parent=Phyra79470;constitutive=1;rank=2 scaffold_41 . repeat_region 19303 27514 . ? . description=dust scaffold_41 . repeat_region 29651 30745 . ? . description=dust scaffold_41 ensembl protein_coding_gene 28674 29561 . + . ID=Phyra79471;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000002;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 28674 29561 . + . ID=Phyra79471;Parent=Phyra79471;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 28674 29561 . + 0 ID=Phyra79471;Parent=Phyra79471;rank=1 scaffold_41 . exon 28674 29561 . + . ID=Phyra79471.1;Parent=Phyra79471;constitutive=1;rank=1 scaffold_41 . biological_region 32634 32636 0.999 - . logic_name=eponine scaffold_41 . biological_region 32675 32677 0.999 + . logic_name=eponine scaffold_41 ensembl protein_coding_gene 32114 33607 . - . ID=Phyra79472;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000003;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 32114 33607 . - . ID=Phyra79472;Parent=Phyra79472;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 32114 33607 . - 0 ID=Phyra79472;Parent=Phyra79472;rank=1 scaffold_41 . exon 32114 33607 . - . ID=Phyra79472.1;Parent=Phyra79472;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 34556 35497 . + . ID=Phyra79473;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000004;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 34556 35497 . + . ID=Phyra79473;Parent=Phyra79473;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 34556 34873 . + 0 ID=Phyra79473;Parent=Phyra79473;rank=1 scaffold_41 . exon 34556 34873 . + . ID=Phyra79473.1;Parent=Phyra79473;constitutive=1;rank=1 scaffold_41 . CDS 34982 35497 . + 0 ID=Phyra79473;Parent=Phyra79473;rank=2 scaffold_41 . exon 34982 35497 . + . ID=Phyra79473.2;Parent=Phyra79473;constitutive=1;rank=2 scaffold_41 ensembl protein_coding_gene 39087 39707 . + . ID=Phyra95379;biotype=protein_coding;external_name=C_scaffold_41000001;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 39087 39707 . + . ID=Phyra95379;Parent=Phyra95379;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 39087 39171 . + 0 ID=Phyra95379;Parent=Phyra95379;rank=1 scaffold_41 . exon 39087 39171 . + . ID=Phyra95379.1;Parent=Phyra95379;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 39385 39707 . + 0 ID=Phyra95379;Parent=Phyra95379;rank=2 scaffold_41 . exon 39385 39707 . + . ID=Phyra95379.2;Parent=Phyra95379;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . repeat_region 44276 44323 . ? . description=trf scaffold_41 . repeat_region 47643 47853 . - . description=Polinton-1_PI scaffold_41 . repeat_region 48821 48886 . ? . description=trf scaffold_41 ensembl protein_coding_gene 43449 44477 . - . ID=Phyra79475;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000006;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 43449 44477 . - . ID=Phyra79475;Parent=Phyra79475;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 43449 44477 . - 0 ID=Phyra79475;Parent=Phyra79475;rank=1 scaffold_41 . exon 43449 44477 . - . ID=Phyra79475.1;Parent=Phyra79475;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 44930 45278 . + . ID=Phyra79476;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000007;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 44930 45278 . + . ID=Phyra79476;Parent=Phyra79476;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 44930 44958 . + 0 ID=Phyra79476;Parent=Phyra79476;rank=1 scaffold_41 . exon 44930 44958 . + . ID=Phyra79476.1;Parent=Phyra79476;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 44999 45278 . + 0 ID=Phyra79476;Parent=Phyra79476;rank=2 scaffold_41 . exon 44999 45278 . + . ID=Phyra79476.2;Parent=Phyra79476;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 ensembl protein_coding_gene 48556 49791 . + . ID=Phyra79477;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000008;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 48556 49791 . + . ID=Phyra79477;Parent=Phyra79477;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 48556 49791 . + 0 ID=Phyra79477;Parent=Phyra79477;rank=1 scaffold_41 . exon 48556 49791 . + . ID=Phyra79477.1;Parent=Phyra79477;constitutive=1;rank=1 scaffold_41 . biological_region 49853 49859 0.999 + . logic_name=eponine scaffold_41 . repeat_region 49994 50017 . ? . description=dust scaffold_41 . biological_region 50841 50843 0.999 - . logic_name=eponine scaffold_41 . biological_region 54584 54586 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 50811 51260 . - . ID=Phyra71705;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_41000001;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 50811 51260 . - . ID=Phyra71705;Parent=Phyra71705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 50811 51260 . - 0 ID=Phyra71705;Parent=Phyra71705;rank=1 scaffold_41 . exon 50811 51260 . - . ID=Phyra71705.1;Parent=Phyra71705;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 54757 56267 . + . ID=Phyra71706;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_41000002;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 54757 56267 . + . ID=Phyra71706;Parent=Phyra71706;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 54757 54859 . + 0 ID=Phyra71706;Parent=Phyra71706;rank=1 scaffold_41 . exon 54757 54859 . + . ID=Phyra71706.1;Parent=Phyra71706;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 54940 56138 . + 0 ID=Phyra71706;Parent=Phyra71706;rank=2 scaffold_41 . exon 54940 56138 . + . ID=Phyra71706.2;Parent=Phyra71706;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 56160 56267 . + 0 ID=Phyra71706;Parent=Phyra71706;rank=3 scaffold_41 . exon 56160 56267 . + . ID=Phyra71706.3;Parent=Phyra71706;constitutive=1;rank=3 scaffold_41 ensembl protein_coding_gene 51703 52587 . + . ID=Phyra79479;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000010;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 51703 52587 . + . ID=Phyra79479;Parent=Phyra79479;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 51703 52058 . + 0 ID=Phyra79479;Parent=Phyra79479;rank=1 scaffold_41 . exon 51703 52058 . + . ID=Phyra79479.1;Parent=Phyra79479;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 52137 52587 . + 0 ID=Phyra79479;Parent=Phyra79479;rank=2 scaffold_41 . exon 52137 52587 . + . ID=Phyra79479.2;Parent=Phyra79479;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 ensembl protein_coding_gene 52687 54567 . - . ID=Phyra79480;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000011;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 52687 54567 . - . ID=Phyra79480;Parent=Phyra79480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 52687 54567 . - 0 ID=Phyra79480;Parent=Phyra79480;rank=1 scaffold_41 . exon 52687 54567 . - . ID=Phyra79480.1;Parent=Phyra79480;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 56744 58378 . - . ID=Phyra79482;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000013;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 56744 58378 . - . ID=Phyra79482;Parent=Phyra79482;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 56744 58378 . - 0 ID=Phyra79482;Parent=Phyra79482;rank=1 scaffold_41 . exon 56744 58378 . - . ID=Phyra79482.1;Parent=Phyra79482;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 63578 65188 . + . ID=Phyra71707;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_41000003;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 63578 65188 . + . ID=Phyra71707;Parent=Phyra71707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 63578 65188 . + 0 ID=Phyra71707;Parent=Phyra71707;rank=1 scaffold_41 . exon 63578 65188 . + . ID=Phyra71707.1;Parent=Phyra71707;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 61767 63340 . - . ID=Phyra79483;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000014;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 61767 63340 . - . ID=Phyra79483;Parent=Phyra79483;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 61767 61805 . - 0 ID=Phyra79483;Parent=Phyra79483;rank=7 scaffold_41 . exon 61767 61805 . - . ID=Phyra79483.7;Parent=Phyra79483;constitutive=1;rank=7 scaffold_41 . CDS 61906 62027 . - 0 ID=Phyra79483;Parent=Phyra79483;rank=6 scaffold_41 . exon 61906 62027 . - . ID=Phyra79483.6;Parent=Phyra79483;constitutive=1;ensembl_phase=1;rank=6 scaffold_41 . CDS 62191 62270 . - 0 ID=Phyra79483;Parent=Phyra79483;rank=5 scaffold_41 . exon 62191 62270 . - . ID=Phyra79483.5;Parent=Phyra79483;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_41 . CDS 62349 62625 . - 0 ID=Phyra79483;Parent=Phyra79483;rank=4 scaffold_41 . exon 62349 62625 . - . ID=Phyra79483.4;Parent=Phyra79483;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_41 . CDS 62697 62864 . - 0 ID=Phyra79483;Parent=Phyra79483;rank=3 scaffold_41 . exon 62697 62864 . - . ID=Phyra79483.3;Parent=Phyra79483;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_41 . CDS 62891 63119 . - 0 ID=Phyra79483;Parent=Phyra79483;rank=2 scaffold_41 . exon 62891 63119 . - . ID=Phyra79483.2;Parent=Phyra79483;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_41 . CDS 63149 63340 . - 0 ID=Phyra79483;Parent=Phyra79483;rank=1 scaffold_41 . exon 63149 63340 . - . ID=Phyra79483.1;Parent=Phyra79483;constitutive=1;rank=1 scaffold_41 . repeat_region 69798 69805 . ? . description=dust scaffold_41 . repeat_region 70777 71223 . ? . description=dust scaffold_41 . repeat_region 71948 71955 . ? . description=dust scaffold_41 . repeat_region 72295 72303 . ? . description=dust scaffold_41 . repeat_region 72740 72786 . ? . description=trf scaffold_41 . repeat_region 74127 74139 . ? . description=dust scaffold_41 . repeat_region 74657 74665 . ? . description=dust scaffold_41 . repeat_region 75305 75324 . ? . description=dust scaffold_41 . biological_region 75966 75968 0.999 + . logic_name=eponine scaffold_41 . biological_region 75994 76000 0.999 - . logic_name=eponine scaffold_41 . repeat_region 76379 76505 . ? . description=dust scaffold_41 . repeat_region 79476 79521 . ? . description=trf scaffold_41 ensembl protein_coding_gene 70097 70708 . - . ID=Phyra79485;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000016;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 70097 70708 . - . ID=Phyra79485;Parent=Phyra79485;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 70097 70708 . - 0 ID=Phyra79485;Parent=Phyra79485;rank=1 scaffold_41 . exon 70097 70708 . - . ID=Phyra79485.1;Parent=Phyra79485;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 88212 89909 . - . ID=Phyra48635;biotype=protein_coding;external_name=gwEuk.41.78.1;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 88212 89909 . - . ID=Phyra48635;Parent=Phyra48635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 88212 89909 . - 0 ID=Phyra48635;Parent=Phyra48635;rank=1 scaffold_41 . exon 88212 89909 . - . ID=Phyra48635.1;Parent=Phyra48635;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 80299 81186 . - . ID=Phyra79486;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000017;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 80299 81186 . - . ID=Phyra79486;Parent=Phyra79486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 80299 81186 . - 0 ID=Phyra79486;Parent=Phyra79486;rank=1 scaffold_41 . exon 80299 81186 . - . ID=Phyra79486.1;Parent=Phyra79486;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 84052 85568 . - . ID=Phyra95380;biotype=protein_coding;external_name=C_scaffold_41000002;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 84052 85568 . - . ID=Phyra95380;Parent=Phyra95380;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 84052 84090 . - 0 ID=Phyra95380;Parent=Phyra95380;rank=3 scaffold_41 . exon 84052 84090 . - . ID=Phyra95380.3;Parent=Phyra95380;constitutive=1;rank=3 scaffold_41 . CDS 84156 84404 . - 0 ID=Phyra95380;Parent=Phyra95380;rank=2 scaffold_41 . exon 84156 84404 . - . ID=Phyra95380.2;Parent=Phyra95380;constitutive=1;rank=2 scaffold_41 . CDS 84435 85568 . - 0 ID=Phyra95380;Parent=Phyra95380;rank=1 scaffold_41 . exon 84435 85568 . - . ID=Phyra95380.1;Parent=Phyra95380;constitutive=1;rank=1 scaffold_41 . biological_region 98475 98478 0.999 + . logic_name=eponine scaffold_41 . repeat_region 98775 98786 . ? . description=dust scaffold_41 ensembl protein_coding_gene 96625 98703 . - . ID=Phyra79491;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000022;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 96625 98703 . - . ID=Phyra79491;Parent=Phyra79491;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 96625 98703 . - 0 ID=Phyra79491;Parent=Phyra79491;rank=1 scaffold_41 . exon 96625 98703 . - . ID=Phyra79491.1;Parent=Phyra79491;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 92347 94588 . + . ID=Phyra95381;biotype=protein_coding;external_name=C_scaffold_41000003;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 92347 94588 . + . ID=Phyra95381;Parent=Phyra95381;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 92347 92532 . + 0 ID=Phyra95381;Parent=Phyra95381;rank=1 scaffold_41 . exon 92347 92532 . + . ID=Phyra95381.1;Parent=Phyra95381;constitutive=1;rank=1 scaffold_41 . CDS 92785 92975 . + 0 ID=Phyra95381;Parent=Phyra95381;rank=2 scaffold_41 . exon 92785 92975 . + . ID=Phyra95381.2;Parent=Phyra95381;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_41 . CDS 93135 93533 . + 0 ID=Phyra95381;Parent=Phyra95381;rank=3 scaffold_41 . exon 93135 93533 . + . ID=Phyra95381.3;Parent=Phyra95381;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_41 . CDS 93702 93794 . + 0 ID=Phyra95381;Parent=Phyra95381;rank=4 scaffold_41 . exon 93702 93794 . + . ID=Phyra95381.4;Parent=Phyra95381;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_41 . CDS 93918 94537 . + 0 ID=Phyra95381;Parent=Phyra95381;rank=5 scaffold_41 . exon 93918 94537 . + . ID=Phyra95381.5;Parent=Phyra95381;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_41 . CDS 94560 94588 . + 0 ID=Phyra95381;Parent=Phyra95381;rank=6 scaffold_41 . exon 94560 94588 . + . ID=Phyra95381.6;Parent=Phyra95381;constitutive=1;ensembl_phase=1;rank=6 scaffold_41 ensembl protein_coding_gene 94960 96554 . + . ID=Phyra95382;biotype=protein_coding;external_name=C_scaffold_41000004;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 94960 96554 . + . ID=Phyra95382;Parent=Phyra95382;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 94960 95432 . + 0 ID=Phyra95382;Parent=Phyra95382;rank=1 scaffold_41 . exon 94960 95432 . + . ID=Phyra95382.1;Parent=Phyra95382;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 95507 95747 . + 0 ID=Phyra95382;Parent=Phyra95382;rank=2 scaffold_41 . exon 95507 95747 . + . ID=Phyra95382.2;Parent=Phyra95382;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 96060 96303 . + 0 ID=Phyra95382;Parent=Phyra95382;rank=3 scaffold_41 . exon 96060 96303 . + . ID=Phyra95382.3;Parent=Phyra95382;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_41 . CDS 96460 96554 . + 0 ID=Phyra95382;Parent=Phyra95382;rank=4 scaffold_41 . exon 96460 96554 . + . ID=Phyra95382.4;Parent=Phyra95382;constitutive=1;ensembl_phase=1;rank=4 scaffold_41 . repeat_region 102475 103835 . - . description=GypsyPi-1c_I-int scaffold_41 . repeat_region 104879 104902 . ? . description=trf scaffold_41 ensembl protein_coding_gene 104958 106218 . + . ID=Phyra79492;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000023;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 104958 106218 . + . ID=Phyra79492;Parent=Phyra79492;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 104958 106154 . + 0 ID=Phyra79492;Parent=Phyra79492;rank=1 scaffold_41 . exon 104958 106154 . + . ID=Phyra79492.1;Parent=Phyra79492;constitutive=1;rank=1 scaffold_41 . CDS 106195 106218 . + 0 ID=Phyra79492;Parent=Phyra79492;rank=2 scaffold_41 . exon 106195 106218 . + . ID=Phyra79492.2;Parent=Phyra79492;constitutive=1;rank=2 scaffold_41 ensembl protein_coding_gene 109263 111227 . + . ID=Phyra79493;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000024;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 109263 111227 . + . ID=Phyra79493;Parent=Phyra79493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 109263 111227 . + 0 ID=Phyra79493;Parent=Phyra79493;rank=1 scaffold_41 . exon 109263 111227 . + . ID=Phyra79493.1;Parent=Phyra79493;constitutive=1;rank=1 scaffold_41 . biological_region 113711 113713 0.999 + . logic_name=eponine scaffold_41 . repeat_region 116389 116400 . ? . description=dust scaffold_41 . biological_region 117060 117065 0.999 + . logic_name=eponine scaffold_41 . biological_region 117160 117162 0.999 + . logic_name=eponine scaffold_41 . biological_region 117177 117180 0.999 + . logic_name=eponine scaffold_41 . biological_region 117344 117345 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 111356 112975 . - . ID=Phyra79494;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000025;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 111356 112975 . - . ID=Phyra79494;Parent=Phyra79494;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 111356 112975 . - 0 ID=Phyra79494;Parent=Phyra79494;rank=1 scaffold_41 . exon 111356 112975 . - . ID=Phyra79494.1;Parent=Phyra79494;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 114275 115885 . - . ID=Phyra79495;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000026;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 114275 115885 . - . ID=Phyra79495;Parent=Phyra79495;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 114275 115483 . - 0 ID=Phyra79495;Parent=Phyra79495;rank=3 scaffold_41 . exon 114275 115483 . - . ID=Phyra79495.3;Parent=Phyra79495;constitutive=1;rank=3 scaffold_41 . CDS 115553 115666 . - 0 ID=Phyra79495;Parent=Phyra79495;rank=2 scaffold_41 . exon 115553 115666 . - . ID=Phyra79495.2;Parent=Phyra79495;constitutive=1;rank=2 scaffold_41 . CDS 115739 115885 . - 0 ID=Phyra79495;Parent=Phyra79495;rank=1 scaffold_41 . exon 115739 115885 . - . ID=Phyra79495.1;Parent=Phyra79495;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 117107 117637 . + . ID=Phyra79496;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000027;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 117107 117637 . + . ID=Phyra79496;Parent=Phyra79496;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 117107 117637 . + 0 ID=Phyra79496;Parent=Phyra79496;rank=1 scaffold_41 . exon 117107 117637 . + . ID=Phyra79496.1;Parent=Phyra79496;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 118882 120148 . - . ID=Phyra95384;biotype=protein_coding;external_name=C_scaffold_41000006;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 118882 120148 . - . ID=Phyra95384;Parent=Phyra95384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 118882 118888 . - 0 ID=Phyra95384;Parent=Phyra95384;rank=7 scaffold_41 . exon 118882 118888 . - . ID=Phyra95384.7;Parent=Phyra95384;constitutive=1;ensembl_phase=2;rank=7 scaffold_41 . CDS 118930 118943 . - 0 ID=Phyra95384;Parent=Phyra95384;rank=6 scaffold_41 . exon 118930 118943 . - . ID=Phyra95384.6;Parent=Phyra95384;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_41 . CDS 118985 119101 . - 0 ID=Phyra95384;Parent=Phyra95384;rank=5 scaffold_41 . exon 118985 119101 . - . ID=Phyra95384.5;Parent=Phyra95384;constitutive=1;rank=5 scaffold_41 . CDS 119163 119270 . - 0 ID=Phyra95384;Parent=Phyra95384;rank=4 scaffold_41 . exon 119163 119270 . - . ID=Phyra95384.4;Parent=Phyra95384;constitutive=1;rank=4 scaffold_41 . CDS 119342 119717 . - 0 ID=Phyra95384;Parent=Phyra95384;rank=3 scaffold_41 . exon 119342 119717 . - . ID=Phyra95384.3;Parent=Phyra95384;constitutive=1;ensembl_phase=2;rank=3 scaffold_41 . CDS 119791 119910 . - 0 ID=Phyra95384;Parent=Phyra95384;rank=2 scaffold_41 . CDS 119988 120148 . - 0 ID=Phyra95384;Parent=Phyra95384;rank=1 scaffold_41 . repeat_region 120300 120483 . + . description=Polinton-1_PI scaffold_41 ensembl protein_coding_gene 122740 124312 . + . ID=Phyra79498;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000029;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 122740 124312 . + . ID=Phyra79498;Parent=Phyra79498;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 122740 122902 . + 0 ID=Phyra79498;Parent=Phyra79498;rank=1 scaffold_41 . exon 122740 122902 . + . ID=Phyra79498.1;Parent=Phyra79498;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 122979 124312 . + 0 ID=Phyra79498;Parent=Phyra79498;rank=2 scaffold_41 . exon 122979 124312 . + . ID=Phyra79498.2;Parent=Phyra79498;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 ensembl protein_coding_gene 125292 126038 . + . ID=Phyra79499;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000030;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 125292 126038 . + . ID=Phyra79499;Parent=Phyra79499;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 125292 126038 . + 0 ID=Phyra79499;Parent=Phyra79499;rank=1 scaffold_41 . exon 125292 126038 . + . ID=Phyra79499.1;Parent=Phyra79499;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 128800 130419 . - . ID=Phyra79500;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000031;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 128800 130419 . - . ID=Phyra79500;Parent=Phyra79500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 128800 130419 . - 0 ID=Phyra79500;Parent=Phyra79500;rank=1 scaffold_41 . exon 128800 130419 . - . ID=Phyra79500.1;Parent=Phyra79500;constitutive=1;rank=1 scaffold_41 . exon 119791 119910 . - . ID=Phyra95384.2;Parent=Phyra95384;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_41 . exon 119988 120148 . - . ID=Phyra95384.1;Parent=Phyra95384;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . biological_region 137851 137853 0.999 + . logic_name=eponine scaffold_41 ensembl protein_coding_gene 136056 137048 . - . ID=Phyra48642;biotype=protein_coding;external_name=gwEuk.41.85.1;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 136056 137048 . - . ID=Phyra48642;Parent=Phyra48642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 136056 137048 . - 0 ID=Phyra48642;Parent=Phyra48642;rank=1 scaffold_41 . exon 136056 137048 . - . ID=Phyra48642.1;Parent=Phyra48642;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 134232 135861 . + . ID=Phyra79501;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000032;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 134232 135861 . + . ID=Phyra79501;Parent=Phyra79501;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 134232 135053 . + 0 ID=Phyra79501;Parent=Phyra79501;rank=1 scaffold_41 . exon 134232 135053 . + . ID=Phyra79501.1;Parent=Phyra79501;constitutive=1;rank=1 scaffold_41 . CDS 135121 135861 . + 0 ID=Phyra79501;Parent=Phyra79501;rank=2 scaffold_41 . exon 135121 135861 . + . ID=Phyra79501.2;Parent=Phyra79501;constitutive=1;rank=2 scaffold_41 ensembl protein_coding_gene 139280 140524 . - . ID=Phyra79503;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000034;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 139280 140524 . - . ID=Phyra79503;Parent=Phyra79503;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 139280 140524 . - 0 ID=Phyra79503;Parent=Phyra79503;rank=1 scaffold_41 . exon 139280 140524 . - . ID=Phyra79503.1;Parent=Phyra79503;constitutive=1;rank=1 scaffold_41 . repeat_region 144098 144108 . ? . description=dust scaffold_41 . repeat_region 147029 147036 . ? . description=dust scaffold_41 ensembl protein_coding_gene 143104 144045 . + . ID=Phyra79504;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000035;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 143104 144045 . + . ID=Phyra79504;Parent=Phyra79504;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 143104 144045 . + 0 ID=Phyra79504;Parent=Phyra79504;rank=1 scaffold_41 . exon 143104 144045 . + . ID=Phyra79504.1;Parent=Phyra79504;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 145392 146754 . - . ID=Phyra79505;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000036;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 145392 146754 . - . ID=Phyra79505;Parent=Phyra79505;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 145392 146005 . - 0 ID=Phyra79505;Parent=Phyra79505;rank=3 scaffold_41 . exon 145392 146005 . - . ID=Phyra79505.3;Parent=Phyra79505;constitutive=1;ensembl_phase=1;rank=3 scaffold_41 . CDS 146072 146564 . - 0 ID=Phyra79505;Parent=Phyra79505;rank=2 scaffold_41 . exon 146072 146564 . - . ID=Phyra79505.2;Parent=Phyra79505;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_41 . CDS 146641 146754 . - 0 ID=Phyra79505;Parent=Phyra79505;rank=1 scaffold_41 . exon 146641 146754 . - . ID=Phyra79505.1;Parent=Phyra79505;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 148098 149456 . - . ID=Phyra79506;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000037;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 148098 149456 . - . ID=Phyra79506;Parent=Phyra79506;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 148098 149270 . - 0 ID=Phyra79506;Parent=Phyra79506;rank=2 scaffold_41 . exon 148098 149270 . - . ID=Phyra79506.2;Parent=Phyra79506;constitutive=1;rank=2 scaffold_41 . CDS 149343 149456 . - 0 ID=Phyra79506;Parent=Phyra79506;rank=1 scaffold_41 . exon 149343 149456 . - . ID=Phyra79506.1;Parent=Phyra79506;constitutive=1;rank=1 scaffold_41 . biological_region 152044 152044 0.999 - . logic_name=eponine scaffold_41 . biological_region 152097 152099 0.999 + . logic_name=eponine scaffold_41 . biological_region 157135 157140 0.999 + . logic_name=eponine scaffold_41 . biological_region 157428 157432 0.999 + . logic_name=eponine scaffold_41 . biological_region 157524 157527 0.999 + . logic_name=eponine scaffold_41 ensembl pseudogene 156999 158091 . - . ID=Phyra48644;biotype=pseudogene;external_name=gwEuk.41.87.1;logic_name=jgi_phyra1 scaffold_41 ensembl pseudogene 156999 158091 . - . ID=Phyra48644;Parent=Phyra48644;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_41 . exon 156999 158091 . - . ID=Phyra48644.1;Parent=Phyra48644;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 ensembl protein_coding_gene 150265 152265 . - . ID=Phyra79507;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000038;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 150265 152265 . - . ID=Phyra79507;Parent=Phyra79507;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 150265 152265 . - 0 ID=Phyra79507;Parent=Phyra79507;rank=1 scaffold_41 . exon 150265 152265 . - . ID=Phyra79507.1;Parent=Phyra79507;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 152590 153657 . + . ID=Phyra79508;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000039;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 152590 153657 . + . ID=Phyra79508;Parent=Phyra79508;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 152590 153657 . + 0 ID=Phyra79508;Parent=Phyra79508;rank=1 scaffold_41 . exon 152590 153657 . + . ID=Phyra79508.1;Parent=Phyra79508;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 155264 156611 . - . ID=Phyra79509;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000040;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 155264 156611 . - . ID=Phyra79509;Parent=Phyra79509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 155264 155305 . - 0 ID=Phyra79509;Parent=Phyra79509;rank=3 scaffold_41 . exon 155264 155305 . - . ID=Phyra79509.3;Parent=Phyra79509;constitutive=1;rank=3 scaffold_41 . CDS 155373 155828 . - 0 ID=Phyra79509;Parent=Phyra79509;rank=2 scaffold_41 . exon 155373 155828 . - . ID=Phyra79509.2;Parent=Phyra79509;constitutive=1;rank=2 scaffold_41 . CDS 156276 156611 . - 0 ID=Phyra79509;Parent=Phyra79509;rank=1 scaffold_41 . exon 156276 156611 . - . ID=Phyra79509.1;Parent=Phyra79509;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 165923 167047 . + . ID=Phyra71709;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_41000005;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 165923 167047 . + . ID=Phyra71709;Parent=Phyra71709;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 165923 167047 . + 0 ID=Phyra71709;Parent=Phyra71709;rank=1 scaffold_41 . exon 165923 167047 . + . ID=Phyra71709.1;Parent=Phyra71709;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 159797 161758 . - . ID=Phyra79511;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000042;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 159797 161758 . - . ID=Phyra79511;Parent=Phyra79511;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 159797 161758 . - 0 ID=Phyra79511;Parent=Phyra79511;rank=1 scaffold_41 . exon 159797 161758 . - . ID=Phyra79511.1;Parent=Phyra79511;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 162143 162655 . - . ID=Phyra79512;biotype=protein_coding;description=Elicitin-like protein RAL5 [Source:UniProtKB/TrEMBL%3BAcc:Q2N0B4];external_name=fgenesh1_pg.C_scaffold_41000043;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 162143 162655 . - . ID=Phyra79512;Parent=Phyra79512;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 162143 162655 . - 0 ID=Phyra79512;Parent=Phyra79512;rank=1 scaffold_41 . exon 162143 162655 . - . ID=Phyra79512.1;Parent=Phyra79512;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 163375 165375 . + . ID=Phyra79513;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000044;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 163375 165375 . + . ID=Phyra79513;Parent=Phyra79513;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 163375 165375 . + 0 ID=Phyra79513;Parent=Phyra79513;rank=1 scaffold_41 . exon 163375 165375 . + . ID=Phyra79513.1;Parent=Phyra79513;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 167303 171176 . + . ID=Phyra79515;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000046;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 167303 171176 . + . ID=Phyra79515;Parent=Phyra79515;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 167303 167537 . + 0 ID=Phyra79515;Parent=Phyra79515;rank=1 scaffold_41 . exon 167303 167537 . + . ID=Phyra79515.1;Parent=Phyra79515;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 167613 168010 . + 0 ID=Phyra79515;Parent=Phyra79515;rank=2 scaffold_41 . exon 167613 168010 . + . ID=Phyra79515.2;Parent=Phyra79515;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 168080 168125 . + 0 ID=Phyra79515;Parent=Phyra79515;rank=3 scaffold_41 . exon 168080 168125 . + . ID=Phyra79515.3;Parent=Phyra79515;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_41 . CDS 168193 168367 . + 0 ID=Phyra79515;Parent=Phyra79515;rank=4 scaffold_41 . exon 168193 168367 . + . ID=Phyra79515.4;Parent=Phyra79515;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_41 . CDS 168446 171176 . + 0 ID=Phyra79515;Parent=Phyra79515;rank=5 scaffold_41 . exon 168446 171176 . + . ID=Phyra79515.5;Parent=Phyra79515;constitutive=1;ensembl_phase=2;rank=5 scaffold_41 . biological_region 174069 174072 0.999 - . logic_name=eponine scaffold_41 . biological_region 174147 174153 0.999 + . logic_name=eponine scaffold_41 . biological_region 174581 174584 0.999 + . logic_name=eponine scaffold_41 . biological_region 175407 175409 0.999 - . logic_name=eponine scaffold_41 . repeat_region 175725 175784 . ? . description=trf scaffold_41 . biological_region 176508 176512 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 172163 172759 . - . ID=Phyra79516;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000047;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 172163 172759 . - . ID=Phyra79516;Parent=Phyra79516;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 172163 172759 . - 0 ID=Phyra79516;Parent=Phyra79516;rank=1 scaffold_41 . exon 172163 172759 . - . ID=Phyra79516.1;Parent=Phyra79516;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 173254 174630 . - . ID=Phyra79517;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000048;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 173254 174630 . - . ID=Phyra79517;Parent=Phyra79517;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 173254 174630 . - 0 ID=Phyra79517;Parent=Phyra79517;rank=1 scaffold_41 . exon 173254 174630 . - . ID=Phyra79517.1;Parent=Phyra79517;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 174912 175508 . - . ID=Phyra79518;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000049;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 174912 175508 . - . ID=Phyra79518;Parent=Phyra79518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 174912 175508 . - 0 ID=Phyra79518;Parent=Phyra79518;rank=1 scaffold_41 . exon 174912 175508 . - . ID=Phyra79518.1;Parent=Phyra79518;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 178035 182048 . + . ID=Phyra79519;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000050;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 178035 182048 . + . ID=Phyra79519;Parent=Phyra79519;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 178035 178790 . + 0 ID=Phyra79519;Parent=Phyra79519;rank=1 scaffold_41 . exon 178035 178790 . + . ID=Phyra79519.1;Parent=Phyra79519;constitutive=1;rank=1 scaffold_41 . CDS 178854 178899 . + 0 ID=Phyra79519;Parent=Phyra79519;rank=2 scaffold_41 . exon 178854 178899 . + . ID=Phyra79519.2;Parent=Phyra79519;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_41 . CDS 178965 179142 . + 0 ID=Phyra79519;Parent=Phyra79519;rank=3 scaffold_41 . exon 178965 179142 . + . ID=Phyra79519.3;Parent=Phyra79519;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_41 . CDS 179230 179675 . + 0 ID=Phyra79519;Parent=Phyra79519;rank=4 scaffold_41 . exon 179230 179675 . + . ID=Phyra79519.4;Parent=Phyra79519;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_41 . CDS 179752 182048 . + 0 ID=Phyra79519;Parent=Phyra79519;rank=5 scaffold_41 . repeat_region 182851 182860 . ? . description=dust scaffold_41 . repeat_region 182895 182907 . ? . description=dust scaffold_41 . repeat_region 185857 185866 . ? . description=dust scaffold_41 . exon 179752 182048 . + . ID=Phyra79519.5;Parent=Phyra79519;constitutive=1;ensembl_phase=1;rank=5 scaffold_41 ensembl protein_coding_gene 187931 189496 . - . ID=Phyra79520;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000051;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 187931 189496 . - . ID=Phyra79520;Parent=Phyra79520;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 187931 189496 . - 0 ID=Phyra79520;Parent=Phyra79520;rank=1 scaffold_41 . exon 187931 189496 . - . ID=Phyra79520.1;Parent=Phyra79520;constitutive=1;rank=1 scaffold_41 . biological_region 191479 191479 0.999 - . logic_name=eponine scaffold_41 . biological_region 191717 191722 0.999 + . logic_name=eponine scaffold_41 . biological_region 192873 192877 0.999 - . logic_name=eponine scaffold_41 . biological_region 192928 192933 0.999 + . logic_name=eponine scaffold_41 . biological_region 193284 193285 0.999 + . logic_name=eponine scaffold_41 . biological_region 193315 193315 0.999 + . logic_name=eponine scaffold_41 . biological_region 196460 196464 0.999 + . logic_name=eponine scaffold_41 ensembl protein_coding_gene 190088 193747 . + . ID=Phyra79521;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000052;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 190088 193747 . + . ID=Phyra79521;Parent=Phyra79521;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 190088 193747 . + 0 ID=Phyra79521;Parent=Phyra79521;rank=1 scaffold_41 . exon 190088 193747 . + . ID=Phyra79521.1;Parent=Phyra79521;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 199123 199568 . + . ID=Phyra79522;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000053;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 199123 199568 . + . ID=Phyra79522;Parent=Phyra79522;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 199123 199432 . + 0 ID=Phyra79522;Parent=Phyra79522;rank=1 scaffold_41 . exon 199123 199432 . + . ID=Phyra79522.1;Parent=Phyra79522;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 199507 199568 . + 0 ID=Phyra79522;Parent=Phyra79522;rank=2 scaffold_41 . repeat_region 203780 203802 . ? . description=trf scaffold_41 . repeat_region 205952 205959 . ? . description=dust scaffold_41 . repeat_region 206403 206413 . ? . description=dust scaffold_41 ensembl protein_coding_gene 205601 207360 . + . ID=Phyra48562;biotype=protein_coding;external_name=gwEuk.41.5.1;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 205601 207360 . + . ID=Phyra48562;Parent=Phyra48562;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 205601 205874 . + 0 ID=Phyra48562;Parent=Phyra48562;rank=1 scaffold_41 . exon 205601 205874 . + . ID=Phyra48562.1;Parent=Phyra48562;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 205972 206168 . + 0 ID=Phyra48562;Parent=Phyra48562;rank=2 scaffold_41 . exon 205972 206168 . + . ID=Phyra48562.2;Parent=Phyra48562;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 206239 206378 . + 0 ID=Phyra48562;Parent=Phyra48562;rank=3 scaffold_41 . exon 206239 206378 . + . ID=Phyra48562.3;Parent=Phyra48562;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_41 . CDS 206486 206568 . + 0 ID=Phyra48562;Parent=Phyra48562;rank=4 scaffold_41 . exon 206486 206568 . + . ID=Phyra48562.4;Parent=Phyra48562;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_41 . CDS 206655 206785 . + 0 ID=Phyra48562;Parent=Phyra48562;rank=5 scaffold_41 . exon 206655 206785 . + . ID=Phyra48562.5;Parent=Phyra48562;constitutive=1;ensembl_phase=1;rank=5 scaffold_41 . CDS 206882 207231 . + 0 ID=Phyra48562;Parent=Phyra48562;rank=6 scaffold_41 . exon 206882 207231 . + . ID=Phyra48562.6;Parent=Phyra48562;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_41 . CDS 207315 207360 . + 0 ID=Phyra48562;Parent=Phyra48562;rank=7 scaffold_41 . exon 207315 207360 . + . ID=Phyra48562.7;Parent=Phyra48562;constitutive=1;ensembl_phase=2;rank=7 scaffold_41 ensembl protein_coding_gene 208133 209678 . + . ID=Phyra71710;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_41000006;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 208133 209678 . + . ID=Phyra71710;Parent=Phyra71710;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 208133 208390 . + 0 ID=Phyra71710;Parent=Phyra71710;rank=1 scaffold_41 . exon 208133 208390 . + . ID=Phyra71710.1;Parent=Phyra71710;constitutive=1;rank=1 scaffold_41 . CDS 208476 209678 . + 0 ID=Phyra71710;Parent=Phyra71710;rank=2 scaffold_41 . exon 208476 209678 . + . ID=Phyra71710.2;Parent=Phyra71710;constitutive=1;rank=2 scaffold_41 . exon 199507 199568 . + . ID=Phyra79522.2;Parent=Phyra79522;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 ensembl protein_coding_gene 202515 204290 . - . ID=Phyra79523;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000054;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 202515 204290 . - . ID=Phyra79523;Parent=Phyra79523;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 202515 204290 . - 0 ID=Phyra79523;Parent=Phyra79523;rank=1 scaffold_41 . exon 202515 204290 . - . ID=Phyra79523.1;Parent=Phyra79523;constitutive=1;rank=1 scaffold_41 . repeat_region 210862 210911 . + . description=(TCG)n scaffold_41 . biological_region 212633 212635 0.999 + . logic_name=eponine scaffold_41 . biological_region 213297 213300 0.999 + . logic_name=eponine scaffold_41 . biological_region 213728 213731 0.999 - . logic_name=eponine scaffold_41 . biological_region 214024 214027 0.999 - . logic_name=eponine scaffold_41 . biological_region 215533 215536 0.999 + . logic_name=eponine scaffold_41 . biological_region 215541 215544 0.999 + . logic_name=eponine scaffold_41 . biological_region 215591 215597 0.999 - . logic_name=eponine scaffold_41 . biological_region 215646 215648 0.999 + . logic_name=eponine scaffold_41 . biological_region 215677 215677 0.999 + . logic_name=eponine scaffold_41 . biological_region 215729 215736 0.999 - . logic_name=eponine scaffold_41 . biological_region 215757 215757 0.999 - . logic_name=eponine scaffold_41 . biological_region 216252 216254 0.999 - . logic_name=eponine scaffold_41 . biological_region 217443 217447 0.999 + . logic_name=eponine scaffold_41 . biological_region 217490 217492 0.999 - . logic_name=eponine scaffold_41 . biological_region 217536 217537 0.999 - . logic_name=eponine scaffold_41 . biological_region 217544 217547 0.999 + . logic_name=eponine scaffold_41 . biological_region 217574 217574 0.999 - . logic_name=eponine scaffold_41 . biological_region 217822 217824 0.999 + . logic_name=eponine scaffold_41 . biological_region 219031 219034 0.999 + . logic_name=eponine scaffold_41 . biological_region 219126 219131 0.999 + . logic_name=eponine scaffold_41 ensembl protein_coding_gene 211761 213268 . - . ID=Phyra71711;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_41000007;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 211761 213268 . - . ID=Phyra71711;Parent=Phyra71711;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 211761 211928 . - 0 ID=Phyra71711;Parent=Phyra71711;rank=4 scaffold_41 . exon 211761 211928 . - . ID=Phyra71711.4;Parent=Phyra71711;constitutive=1;rank=4 scaffold_41 . CDS 212003 212875 . - 0 ID=Phyra71711;Parent=Phyra71711;rank=3 scaffold_41 . exon 212003 212875 . - . ID=Phyra71711.3;Parent=Phyra71711;constitutive=1;rank=3 scaffold_41 . CDS 212938 213081 . - 0 ID=Phyra71711;Parent=Phyra71711;rank=2 scaffold_41 . exon 212938 213081 . - . ID=Phyra71711.2;Parent=Phyra71711;constitutive=1;rank=2 scaffold_41 . CDS 213119 213268 . - 0 ID=Phyra71711;Parent=Phyra71711;rank=1 scaffold_41 . exon 213119 213268 . - . ID=Phyra71711.1;Parent=Phyra71711;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 210151 211268 . - . ID=Phyra79526;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000057;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 210151 211268 . - . ID=Phyra79526;Parent=Phyra79526;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 210151 210559 . - 0 ID=Phyra79526;Parent=Phyra79526;rank=3 scaffold_41 . exon 210151 210559 . - . ID=Phyra79526.3;Parent=Phyra79526;constitutive=1;ensembl_phase=2;rank=3 scaffold_41 . CDS 210625 211175 . - 0 ID=Phyra79526;Parent=Phyra79526;rank=2 scaffold_41 . exon 210625 211175 . - . ID=Phyra79526.2;Parent=Phyra79526;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_41 . CDS 211206 211268 . - 0 ID=Phyra79526;Parent=Phyra79526;rank=1 scaffold_41 . exon 211206 211268 . - . ID=Phyra79526.1;Parent=Phyra79526;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 213896 215371 . + . ID=Phyra79528;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000059;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 213896 215371 . + . ID=Phyra79528;Parent=Phyra79528;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 213896 214121 . + 0 ID=Phyra79528;Parent=Phyra79528;rank=1 scaffold_41 . exon 213896 214121 . + . ID=Phyra79528.1;Parent=Phyra79528;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 214205 214413 . + 0 ID=Phyra79528;Parent=Phyra79528;rank=2 scaffold_41 . exon 214205 214413 . + . ID=Phyra79528.2;Parent=Phyra79528;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 214476 214889 . + 0 ID=Phyra79528;Parent=Phyra79528;rank=3 scaffold_41 . exon 214476 214889 . + . ID=Phyra79528.3;Parent=Phyra79528;constitutive=1;rank=3 scaffold_41 . CDS 214953 215016 . + 0 ID=Phyra79528;Parent=Phyra79528;rank=4 scaffold_41 . exon 214953 215016 . + . ID=Phyra79528.4;Parent=Phyra79528;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_41 . CDS 215073 215371 . + 0 ID=Phyra79528;Parent=Phyra79528;rank=5 scaffold_41 . exon 215073 215371 . + . ID=Phyra79528.5;Parent=Phyra79528;constitutive=1;ensembl_phase=1;rank=5 scaffold_41 ensembl protein_coding_gene 215463 221900 . - . ID=Phyra79529;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000060;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 215463 221900 . - . ID=Phyra79529;Parent=Phyra79529;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 215463 215721 . - 0 ID=Phyra79529;Parent=Phyra79529;rank=13 scaffold_41 . exon 215463 215721 . - . ID=Phyra79529.13;Parent=Phyra79529;constitutive=1;ensembl_phase=2;rank=13 scaffold_41 . CDS 215761 215870 . - 0 ID=Phyra79529;Parent=Phyra79529;rank=12 scaffold_41 . exon 215761 215870 . - . ID=Phyra79529.12;Parent=Phyra79529;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_41 . CDS 216052 216314 . - 0 ID=Phyra79529;Parent=Phyra79529;rank=11 scaffold_41 . exon 216052 216314 . - . ID=Phyra79529.11;Parent=Phyra79529;constitutive=1;ensembl_phase=1;rank=11 scaffold_41 . CDS 216460 216570 . - 0 ID=Phyra79529;Parent=Phyra79529;rank=10 scaffold_41 . exon 216460 216570 . - . ID=Phyra79529.10;Parent=Phyra79529;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_41 . CDS 216664 218827 . - 0 ID=Phyra79529;Parent=Phyra79529;rank=9 scaffold_41 . exon 216664 218827 . - . ID=Phyra79529.9;Parent=Phyra79529;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_41 . CDS 218880 218936 . - 0 ID=Phyra79529;Parent=Phyra79529;rank=8 scaffold_41 . exon 218880 218936 . - . ID=Phyra79529.8;Parent=Phyra79529;constitutive=1;rank=8 scaffold_41 . CDS 219000 219047 . - 0 ID=Phyra79529;Parent=Phyra79529;rank=7 scaffold_41 . exon 219000 219047 . - . ID=Phyra79529.7;Parent=Phyra79529;constitutive=1;rank=7 scaffold_41 . CDS 219102 220352 . - 0 ID=Phyra79529;Parent=Phyra79529;rank=6 scaffold_41 . exon 219102 220352 . - . ID=Phyra79529.6;Parent=Phyra79529;constitutive=1;rank=6 scaffold_41 . CDS 220440 220527 . - 0 ID=Phyra79529;Parent=Phyra79529;rank=5 scaffold_41 . CDS 220583 220814 . - 0 ID=Phyra79529;Parent=Phyra79529;rank=4 scaffold_41 . CDS 220857 221595 . - 0 ID=Phyra79529;Parent=Phyra79529;rank=3 scaffold_41 . CDS 221656 221727 . - 0 ID=Phyra79529;Parent=Phyra79529;rank=2 scaffold_41 . CDS 221799 221900 . - 0 ID=Phyra79529;Parent=Phyra79529;rank=1 scaffold_41 . repeat_region 225332 225356 . ? . description=trf scaffold_41 . repeat_region 225332 225356 . ? . description=dust scaffold_41 . repeat_region 226364 226416 . ? . description=dust scaffold_41 . repeat_region 226365 226417 . ? . description=trf scaffold_41 ensembl protein_coding_gene 227604 229025 . - . ID=Phyra71712;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_41000008;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 227604 229025 . - . ID=Phyra71712;Parent=Phyra71712;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 227604 229025 . - 0 ID=Phyra71712;Parent=Phyra71712;rank=1 scaffold_41 . exon 227604 229025 . - . ID=Phyra71712.1;Parent=Phyra71712;constitutive=1;rank=1 scaffold_41 . exon 220440 220527 . - . ID=Phyra79529.5;Parent=Phyra79529;constitutive=1;ensembl_phase=2;rank=5 scaffold_41 . exon 220583 220814 . - . ID=Phyra79529.4;Parent=Phyra79529;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_41 . exon 220857 221595 . - . ID=Phyra79529.3;Parent=Phyra79529;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_41 . exon 221656 221727 . - . ID=Phyra79529.2;Parent=Phyra79529;constitutive=1;rank=2 scaffold_41 . exon 221799 221900 . - . ID=Phyra79529.1;Parent=Phyra79529;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 222134 224595 . + . ID=Phyra79530;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000061;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 222134 224595 . + . ID=Phyra79530;Parent=Phyra79530;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 222134 222137 . + 0 ID=Phyra79530;Parent=Phyra79530;rank=1 scaffold_41 . exon 222134 222137 . + . ID=Phyra79530.1;Parent=Phyra79530;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 222158 223749 . + 0 ID=Phyra79530;Parent=Phyra79530;rank=2 scaffold_41 . exon 222158 223749 . + . ID=Phyra79530.2;Parent=Phyra79530;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 223823 224337 . + 0 ID=Phyra79530;Parent=Phyra79530;rank=3 scaffold_41 . exon 223823 224337 . + . ID=Phyra79530.3;Parent=Phyra79530;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_41 . CDS 224421 224595 . + 0 ID=Phyra79530;Parent=Phyra79530;rank=4 scaffold_41 . exon 224421 224595 . + . ID=Phyra79530.4;Parent=Phyra79530;constitutive=1;ensembl_phase=2;rank=4 scaffold_41 ensembl protein_coding_gene 225248 226899 . - . ID=Phyra79531;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000062;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 225248 226899 . - . ID=Phyra79531;Parent=Phyra79531;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 225248 225516 . - 0 ID=Phyra79531;Parent=Phyra79531;rank=2 scaffold_41 . exon 225248 225516 . - . ID=Phyra79531.2;Parent=Phyra79531;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 225552 226899 . - 0 ID=Phyra79531;Parent=Phyra79531;rank=1 scaffold_41 . exon 225552 226899 . - . ID=Phyra79531.1;Parent=Phyra79531;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . biological_region 230355 230355 0.999 + . logic_name=eponine scaffold_41 . biological_region 236876 236877 0.999 + . logic_name=eponine scaffold_41 . biological_region 238417 238422 0.999 - . logic_name=eponine scaffold_41 . biological_region 238448 238453 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 234931 236016 . - . ID=Phyra48581;biotype=protein_coding;external_name=gwEuk.41.24.1;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 234931 236016 . - . ID=Phyra48581;Parent=Phyra48581;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 234931 235318 . - 0 ID=Phyra48581;Parent=Phyra48581;rank=5 scaffold_41 . exon 234931 235318 . - . ID=Phyra48581.5;Parent=Phyra48581;constitutive=1;ensembl_phase=2;rank=5 scaffold_41 . CDS 235380 235535 . - 0 ID=Phyra48581;Parent=Phyra48581;rank=4 scaffold_41 . exon 235380 235535 . - . ID=Phyra48581.4;Parent=Phyra48581;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_41 . CDS 235603 235688 . - 0 ID=Phyra48581;Parent=Phyra48581;rank=3 scaffold_41 . exon 235603 235688 . - . ID=Phyra48581.3;Parent=Phyra48581;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_41 . CDS 235752 235814 . - 0 ID=Phyra48581;Parent=Phyra48581;rank=2 scaffold_41 . exon 235752 235814 . - . ID=Phyra48581.2;Parent=Phyra48581;constitutive=1;rank=2 scaffold_41 . CDS 235876 236016 . - 0 ID=Phyra48581;Parent=Phyra48581;rank=1 scaffold_41 . exon 235876 236016 . - . ID=Phyra48581.1;Parent=Phyra48581;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 236664 237417 . + . ID=Phyra71713;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_41000009;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 236664 237417 . + . ID=Phyra71713;Parent=Phyra71713;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 236664 236696 . + 0 ID=Phyra71713;Parent=Phyra71713;rank=1 scaffold_41 . exon 236664 236696 . + . ID=Phyra71713.1;Parent=Phyra71713;constitutive=1;rank=1 scaffold_41 . CDS 236801 236828 . + 0 ID=Phyra71713;Parent=Phyra71713;rank=2 scaffold_41 . exon 236801 236828 . + . ID=Phyra71713.2;Parent=Phyra71713;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_41 . CDS 236890 236976 . + 0 ID=Phyra71713;Parent=Phyra71713;rank=3 scaffold_41 . exon 236890 236976 . + . ID=Phyra71713.3;Parent=Phyra71713;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_41 . CDS 237043 237315 . + 0 ID=Phyra71713;Parent=Phyra71713;rank=4 scaffold_41 . exon 237043 237315 . + . ID=Phyra71713.4;Parent=Phyra71713;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_41 . CDS 237389 237417 . + 0 ID=Phyra71713;Parent=Phyra71713;rank=5 scaffold_41 . exon 237389 237417 . + . ID=Phyra71713.5;Parent=Phyra71713;constitutive=1;ensembl_phase=1;rank=5 scaffold_41 ensembl protein_coding_gene 229901 231127 . - . ID=Phyra79533;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000064;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 229901 231127 . - . ID=Phyra79533;Parent=Phyra79533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 229901 231127 . - 0 ID=Phyra79533;Parent=Phyra79533;rank=1 scaffold_41 . exon 229901 231127 . - . ID=Phyra79533.1;Parent=Phyra79533;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 231255 232584 . + . ID=Phyra95391;biotype=protein_coding;external_name=C_scaffold_41000013;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 231255 232584 . + . ID=Phyra95391;Parent=Phyra95391;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 231255 231737 . + 0 ID=Phyra95391;Parent=Phyra95391;rank=1 scaffold_41 . exon 231255 231737 . + . ID=Phyra95391.1;Parent=Phyra95391;constitutive=1;rank=1 scaffold_41 . CDS 231876 232004 . + 0 ID=Phyra95391;Parent=Phyra95391;rank=2 scaffold_41 . exon 231876 232004 . + . ID=Phyra95391.2;Parent=Phyra95391;constitutive=1;rank=2 scaffold_41 . CDS 232065 232355 . + 0 ID=Phyra95391;Parent=Phyra95391;rank=3 scaffold_41 . exon 232065 232355 . + . ID=Phyra95391.3;Parent=Phyra95391;constitutive=1;rank=3 scaffold_41 . CDS 232564 232584 . + 0 ID=Phyra95391;Parent=Phyra95391;rank=4 scaffold_41 . exon 232564 232584 . + . ID=Phyra95391.4;Parent=Phyra95391;constitutive=1;rank=4 scaffold_41 . repeat_region 241139 241200 . ? . description=trf scaffold_41 . repeat_region 241144 241222 . ? . description=dust scaffold_41 . repeat_region 241346 241366 . ? . description=trf scaffold_41 . repeat_region 241642 241705 . ? . description=trf scaffold_41 . repeat_region 245047 245096 . ? . description=trf scaffold_41 . repeat_region 245060 245089 . ? . description=trf scaffold_41 . repeat_region 245361 245413 . ? . description=dust scaffold_41 . repeat_region 245368 245409 . ? . description=trf scaffold_41 . repeat_region 248060 248311 . ? . description=trf scaffold_41 ensembl protein_coding_gene 239592 241571 . - . ID=Phyra79537;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000068;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 239592 241571 . - . ID=Phyra79537;Parent=Phyra79537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 239592 239633 . - 0 ID=Phyra79537;Parent=Phyra79537;rank=5 scaffold_41 . exon 239592 239633 . - . ID=Phyra79537.5;Parent=Phyra79537;constitutive=1;rank=5 scaffold_41 . CDS 239656 240469 . - 0 ID=Phyra79537;Parent=Phyra79537;rank=4 scaffold_41 . exon 239656 240469 . - . ID=Phyra79537.4;Parent=Phyra79537;constitutive=1;ensembl_phase=2;rank=4 scaffold_41 . CDS 240593 241017 . - 0 ID=Phyra79537;Parent=Phyra79537;rank=3 scaffold_41 . exon 240593 241017 . - . ID=Phyra79537.3;Parent=Phyra79537;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_41 . CDS 241108 241478 . - 0 ID=Phyra79537;Parent=Phyra79537;rank=2 scaffold_41 . exon 241108 241478 . - . ID=Phyra79537.2;Parent=Phyra79537;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 241517 241571 . - 0 ID=Phyra79537;Parent=Phyra79537;rank=1 scaffold_41 . exon 241517 241571 . - . ID=Phyra79537.1;Parent=Phyra79537;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 ensembl protein_coding_gene 241912 242793 . + . ID=Phyra79538;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000069;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 241912 242793 . + . ID=Phyra79538;Parent=Phyra79538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 241912 242793 . + 0 ID=Phyra79538;Parent=Phyra79538;rank=1 scaffold_41 . exon 241912 242793 . + . ID=Phyra79538.1;Parent=Phyra79538;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 242901 244511 . - . ID=Phyra79539;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000070;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 242901 244511 . - . ID=Phyra79539;Parent=Phyra79539;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 242901 243056 . - 0 ID=Phyra79539;Parent=Phyra79539;rank=2 scaffold_41 . exon 242901 243056 . - . ID=Phyra79539.2;Parent=Phyra79539;constitutive=1;rank=2 scaffold_41 . CDS 243132 244511 . - 0 ID=Phyra79539;Parent=Phyra79539;rank=1 scaffold_41 . exon 243132 244511 . - . ID=Phyra79539.1;Parent=Phyra79539;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 245540 247366 . - . ID=Phyra79541;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000072;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 245540 247366 . - . ID=Phyra79541;Parent=Phyra79541;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 245540 246796 . - 0 ID=Phyra79541;Parent=Phyra79541;rank=3 scaffold_41 . exon 245540 246796 . - . ID=Phyra79541.3;Parent=Phyra79541;constitutive=1;rank=3 scaffold_41 . CDS 246886 247091 . - 0 ID=Phyra79541;Parent=Phyra79541;rank=2 scaffold_41 . exon 246886 247091 . - . ID=Phyra79541.2;Parent=Phyra79541;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 247168 247366 . - 0 ID=Phyra79541;Parent=Phyra79541;rank=1 scaffold_41 . exon 247168 247366 . - . ID=Phyra79541.1;Parent=Phyra79541;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 ensembl protein_coding_gene 244636 245442 . + . ID=Phyra95395;biotype=protein_coding;external_name=C_scaffold_41000017;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 244636 245442 . + . ID=Phyra95395;Parent=Phyra95395;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 244636 244731 . + 0 ID=Phyra95395;Parent=Phyra95395;rank=1 scaffold_41 . exon 244636 244731 . + . ID=Phyra95395.1;Parent=Phyra95395;constitutive=1;rank=1 scaffold_41 . CDS 244793 244857 . + 0 ID=Phyra95395;Parent=Phyra95395;rank=2 scaffold_41 . exon 244793 244857 . + . ID=Phyra95395.2;Parent=Phyra95395;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_41 . CDS 244923 245442 . + 0 ID=Phyra95395;Parent=Phyra95395;rank=3 scaffold_41 . exon 244923 245442 . + . ID=Phyra95395.3;Parent=Phyra95395;constitutive=1;ensembl_phase=2;rank=3 scaffold_41 ensembl protein_coding_gene 247926 250280 . + . ID=Phyra95396;biotype=protein_coding;external_name=C_scaffold_41000018;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 247926 250280 . + . ID=Phyra95396;Parent=Phyra95396;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 247926 248115 . + 0 ID=Phyra95396;Parent=Phyra95396;rank=1 scaffold_41 . exon 247926 248115 . + . ID=Phyra95396.1;Parent=Phyra95396;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 248302 248452 . + 0 ID=Phyra95396;Parent=Phyra95396;rank=2 scaffold_41 . exon 248302 248452 . + . ID=Phyra95396.2;Parent=Phyra95396;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_41 . CDS 248552 248833 . + 0 ID=Phyra95396;Parent=Phyra95396;rank=3 scaffold_41 . exon 248552 248833 . + . ID=Phyra95396.3;Parent=Phyra95396;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_41 . CDS 248902 249410 . + 0 ID=Phyra95396;Parent=Phyra95396;rank=4 scaffold_41 . exon 248902 249410 . + . ID=Phyra95396.4;Parent=Phyra95396;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_41 . CDS 249462 249675 . + 0 ID=Phyra95396;Parent=Phyra95396;rank=5 scaffold_41 . CDS 249743 249823 . + 0 ID=Phyra95396;Parent=Phyra95396;rank=6 scaffold_41 . CDS 249845 250145 . + 0 ID=Phyra95396;Parent=Phyra95396;rank=7 scaffold_41 . CDS 250191 250280 . + 0 ID=Phyra95396;Parent=Phyra95396;rank=8 scaffold_41 . biological_region 253706 253710 0.999 - . logic_name=eponine scaffold_41 . biological_region 257867 257872 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 253307 254071 . + . ID=Phyra48587;biotype=protein_coding;external_name=gwEuk.41.30.1;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 253307 254071 . + . ID=Phyra48587;Parent=Phyra48587;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 253307 253381 . + 0 ID=Phyra48587;Parent=Phyra48587;rank=1 scaffold_41 . exon 253307 253381 . + . ID=Phyra48587.1;Parent=Phyra48587;constitutive=1;rank=1 scaffold_41 . CDS 253458 253754 . + 0 ID=Phyra48587;Parent=Phyra48587;rank=2 scaffold_41 . exon 253458 253754 . + . ID=Phyra48587.2;Parent=Phyra48587;constitutive=1;rank=2 scaffold_41 . CDS 253843 253908 . + 0 ID=Phyra48587;Parent=Phyra48587;rank=3 scaffold_41 . exon 253843 253908 . + . ID=Phyra48587.3;Parent=Phyra48587;constitutive=1;rank=3 scaffold_41 . CDS 253991 254071 . + 0 ID=Phyra48587;Parent=Phyra48587;rank=4 scaffold_41 . exon 253991 254071 . + . ID=Phyra48587.4;Parent=Phyra48587;constitutive=1;rank=4 scaffold_41 ensembl protein_coding_gene 257033 257785 . - . ID=Phyra79547;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000078;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 257033 257785 . - . ID=Phyra79547;Parent=Phyra79547;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 257033 257234 . - 0 ID=Phyra79547;Parent=Phyra79547;rank=4 scaffold_41 . exon 257033 257234 . - . ID=Phyra79547.4;Parent=Phyra79547;constitutive=1;ensembl_phase=2;rank=4 scaffold_41 . CDS 257302 257354 . - 0 ID=Phyra79547;Parent=Phyra79547;rank=3 scaffold_41 . exon 257302 257354 . - . ID=Phyra79547.3;Parent=Phyra79547;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_41 . CDS 257428 257632 . - 0 ID=Phyra79547;Parent=Phyra79547;rank=2 scaffold_41 . exon 257428 257632 . - . ID=Phyra79547.2;Parent=Phyra79547;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 257706 257785 . - 0 ID=Phyra79547;Parent=Phyra79547;rank=1 scaffold_41 . exon 257706 257785 . - . ID=Phyra79547.1;Parent=Phyra79547;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . exon 249462 249675 . + . ID=Phyra95396.5;Parent=Phyra95396;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_41 . exon 249743 249823 . + . ID=Phyra95396.6;Parent=Phyra95396;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_41 . exon 249845 250145 . + . ID=Phyra95396.7;Parent=Phyra95396;constitutive=1;ensembl_phase=2;rank=7 scaffold_41 . exon 250191 250280 . + . ID=Phyra95396.8;Parent=Phyra95396;constitutive=1;rank=8 scaffold_41 ensembl protein_coding_gene 251145 252946 . - . ID=Phyra95397;biotype=protein_coding;external_name=C_scaffold_41000019;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 251145 252946 . - . ID=Phyra95397;Parent=Phyra95397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 251145 251264 . - 0 ID=Phyra95397;Parent=Phyra95397;rank=7 scaffold_41 . exon 251145 251264 . - . ID=Phyra95397.7;Parent=Phyra95397;constitutive=1;rank=7 scaffold_41 . CDS 251524 251871 . - 0 ID=Phyra95397;Parent=Phyra95397;rank=6 scaffold_41 . exon 251524 251871 . - . ID=Phyra95397.6;Parent=Phyra95397;constitutive=1;rank=6 scaffold_41 . CDS 251942 251964 . - 0 ID=Phyra95397;Parent=Phyra95397;rank=5 scaffold_41 . exon 251942 251964 . - . ID=Phyra95397.5;Parent=Phyra95397;constitutive=1;ensembl_phase=1;rank=5 scaffold_41 . CDS 252013 252133 . - 0 ID=Phyra95397;Parent=Phyra95397;rank=4 scaffold_41 . exon 252013 252133 . - . ID=Phyra95397.4;Parent=Phyra95397;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_41 . CDS 252263 252266 . - 0 ID=Phyra95397;Parent=Phyra95397;rank=3 scaffold_41 . exon 252263 252266 . - . ID=Phyra95397.3;Parent=Phyra95397;constitutive=1;ensembl_phase=2;rank=3 scaffold_41 . CDS 252457 252578 . - 0 ID=Phyra95397;Parent=Phyra95397;rank=2 scaffold_41 . exon 252457 252578 . - . ID=Phyra95397.2;Parent=Phyra95397;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_41 . CDS 252647 252946 . - 0 ID=Phyra95397;Parent=Phyra95397;rank=1 scaffold_41 . exon 252647 252946 . - . ID=Phyra95397.1;Parent=Phyra95397;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 255493 256341 . - . ID=Phyra95400;biotype=protein_coding;external_name=C_scaffold_41000022;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 255493 256341 . - . ID=Phyra95400;Parent=Phyra95400;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 255493 255672 . - 0 ID=Phyra95400;Parent=Phyra95400;rank=4 scaffold_41 . exon 255493 255672 . - . ID=Phyra95400.4;Parent=Phyra95400;constitutive=1;rank=4 scaffold_41 . CDS 255747 255853 . - 0 ID=Phyra95400;Parent=Phyra95400;rank=3 scaffold_41 . exon 255747 255853 . - . ID=Phyra95400.3;Parent=Phyra95400;constitutive=1;ensembl_phase=1;rank=3 scaffold_41 . CDS 255908 256133 . - 0 ID=Phyra95400;Parent=Phyra95400;rank=2 scaffold_41 . exon 255908 256133 . - . ID=Phyra95400.2;Parent=Phyra95400;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_41 . CDS 256201 256341 . - 0 ID=Phyra95400;Parent=Phyra95400;rank=1 scaffold_41 . exon 256201 256341 . - . ID=Phyra95400.1;Parent=Phyra95400;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 260718 262739 . + . ID=Phyra79548;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000079;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 260718 262739 . + . ID=Phyra79548;Parent=Phyra79548;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 260718 262739 . + 0 ID=Phyra79548;Parent=Phyra79548;rank=1 scaffold_41 . exon 260718 262739 . + . ID=Phyra79548.1;Parent=Phyra79548;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 263018 265847 . - . ID=Phyra79549;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000080;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 263018 265847 . - . ID=Phyra79549;Parent=Phyra79549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 263018 263780 . - 0 ID=Phyra79549;Parent=Phyra79549;rank=7 scaffold_41 . exon 263018 263780 . - . ID=Phyra79549.7;Parent=Phyra79549;constitutive=1;ensembl_phase=2;rank=7 scaffold_41 . CDS 263953 264056 . - 0 ID=Phyra79549;Parent=Phyra79549;rank=6 scaffold_41 . exon 263953 264056 . - . ID=Phyra79549.6;Parent=Phyra79549;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_41 . CDS 264241 264362 . - 0 ID=Phyra79549;Parent=Phyra79549;rank=5 scaffold_41 . exon 264241 264362 . - . ID=Phyra79549.5;Parent=Phyra79549;constitutive=1;ensembl_phase=1;rank=5 scaffold_41 . CDS 264433 264522 . - 0 ID=Phyra79549;Parent=Phyra79549;rank=4 scaffold_41 . exon 264433 264522 . - . ID=Phyra79549.4;Parent=Phyra79549;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_41 . CDS 264598 265018 . - 0 ID=Phyra79549;Parent=Phyra79549;rank=3 scaffold_41 . exon 264598 265018 . - . ID=Phyra79549.3;Parent=Phyra79549;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_41 . CDS 265132 265638 . - 0 ID=Phyra79549;Parent=Phyra79549;rank=2 scaffold_41 . exon 265132 265638 . - . ID=Phyra79549.2;Parent=Phyra79549;constitutive=1;rank=2 scaffold_41 . CDS 265707 265847 . - 0 ID=Phyra79549;Parent=Phyra79549;rank=1 scaffold_41 . exon 265707 265847 . - . ID=Phyra79549.1;Parent=Phyra79549;constitutive=1;rank=1 scaffold_41 . biological_region 272626 272629 0.999 + . logic_name=eponine scaffold_41 . biological_region 273661 273665 0.999 + . logic_name=eponine scaffold_41 . biological_region 273664 273665 0.999 - . logic_name=eponine scaffold_41 . biological_region 275475 275477 0.999 + . logic_name=eponine scaffold_41 . biological_region 275650 275650 0.999 + . logic_name=eponine scaffold_41 . biological_region 276398 276400 0.999 + . logic_name=eponine scaffold_41 . biological_region 277693 277694 0.999 + . logic_name=eponine scaffold_41 . biological_region 277713 277713 0.999 + . logic_name=eponine scaffold_41 . biological_region 277812 277819 0.999 + . logic_name=eponine scaffold_41 ensembl protein_coding_gene 272427 273517 . - . ID=Phyra79550;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000081;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 272427 273517 . - . ID=Phyra79550;Parent=Phyra79550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 272427 273216 . - 0 ID=Phyra79550;Parent=Phyra79550;rank=2 scaffold_41 . exon 272427 273216 . - . ID=Phyra79550.2;Parent=Phyra79550;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 273285 273517 . - 0 ID=Phyra79550;Parent=Phyra79550;rank=1 scaffold_41 . exon 273285 273517 . - . ID=Phyra79550.1;Parent=Phyra79550;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 ensembl protein_coding_gene 278128 280092 . - . ID=Phyra79551;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000082;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 278128 280092 . - . ID=Phyra79551;Parent=Phyra79551;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 278128 280092 . - 0 ID=Phyra79551;Parent=Phyra79551;rank=1 scaffold_41 . exon 278128 280092 . - . ID=Phyra79551.1;Parent=Phyra79551;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 280319 283086 . + . ID=Phyra79552;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000083;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 280319 283086 . + . ID=Phyra79552;Parent=Phyra79552;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 280319 280424 . + 0 ID=Phyra79552;Parent=Phyra79552;rank=1 scaffold_41 . exon 280319 280424 . + . ID=Phyra79552.1;Parent=Phyra79552;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 280487 280557 . + 0 ID=Phyra79552;Parent=Phyra79552;rank=2 scaffold_41 . exon 280487 280557 . + . ID=Phyra79552.2;Parent=Phyra79552;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 280616 280774 . + 0 ID=Phyra79552;Parent=Phyra79552;rank=3 scaffold_41 . exon 280616 280774 . + . ID=Phyra79552.3;Parent=Phyra79552;constitutive=1;rank=3 scaffold_41 . CDS 280849 280917 . + 0 ID=Phyra79552;Parent=Phyra79552;rank=4 scaffold_41 . exon 280849 280917 . + . ID=Phyra79552.4;Parent=Phyra79552;constitutive=1;rank=4 scaffold_41 . CDS 280998 281087 . + 0 ID=Phyra79552;Parent=Phyra79552;rank=5 scaffold_41 . exon 280998 281087 . + . ID=Phyra79552.5;Parent=Phyra79552;constitutive=1;rank=5 scaffold_41 . CDS 281139 281259 . + 0 ID=Phyra79552;Parent=Phyra79552;rank=6 scaffold_41 . exon 281139 281259 . + . ID=Phyra79552.6;Parent=Phyra79552;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_41 . CDS 281342 281495 . + 0 ID=Phyra79552;Parent=Phyra79552;rank=7 scaffold_41 . exon 281342 281495 . + . ID=Phyra79552.7;Parent=Phyra79552;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_41 . CDS 281567 281756 . + 0 ID=Phyra79552;Parent=Phyra79552;rank=8 scaffold_41 . exon 281567 281756 . + . ID=Phyra79552.8;Parent=Phyra79552;constitutive=1;ensembl_phase=2;rank=8 scaffold_41 . CDS 281844 281972 . + 0 ID=Phyra79552;Parent=Phyra79552;rank=9 scaffold_41 . exon 281844 281972 . + . ID=Phyra79552.9;Parent=Phyra79552;constitutive=1;rank=9 scaffold_41 . CDS 282053 282441 . + 0 ID=Phyra79552;Parent=Phyra79552;rank=10 scaffold_41 . exon 282053 282441 . + . ID=Phyra79552.10;Parent=Phyra79552;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_41 . CDS 282510 282662 . + 0 ID=Phyra79552;Parent=Phyra79552;rank=11 scaffold_41 . exon 282510 282662 . + . ID=Phyra79552.11;Parent=Phyra79552;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_41 . CDS 282732 283086 . + 0 ID=Phyra79552;Parent=Phyra79552;rank=12 scaffold_41 . exon 282732 283086 . + . ID=Phyra79552.12;Parent=Phyra79552;constitutive=1;ensembl_phase=2;rank=12 scaffold_41 ensembl protein_coding_gene 283357 284006 . - . ID=Phyra79553;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000084;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 283357 284006 . - . ID=Phyra79553;Parent=Phyra79553;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 283357 283521 . - 0 ID=Phyra79553;Parent=Phyra79553;rank=2 scaffold_41 . exon 283357 283521 . - . ID=Phyra79553.2;Parent=Phyra79553;constitutive=1;rank=2 scaffold_41 . CDS 283587 284006 . - 0 ID=Phyra79553;Parent=Phyra79553;rank=1 scaffold_41 . exon 283587 284006 . - . ID=Phyra79553.1;Parent=Phyra79553;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 284204 285656 . - . ID=Phyra79554;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000085;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 284204 285656 . - . ID=Phyra79554;Parent=Phyra79554;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 284204 284467 . - 0 ID=Phyra79554;Parent=Phyra79554;rank=5 scaffold_41 . exon 284204 284467 . - . ID=Phyra79554.5;Parent=Phyra79554;constitutive=1;rank=5 scaffold_41 . CDS 284540 285265 . - 0 ID=Phyra79554;Parent=Phyra79554;rank=4 scaffold_41 . exon 284540 285265 . - . ID=Phyra79554.4;Parent=Phyra79554;constitutive=1;rank=4 scaffold_41 . CDS 285328 285391 . - 0 ID=Phyra79554;Parent=Phyra79554;rank=3 scaffold_41 . exon 285328 285391 . - . ID=Phyra79554.3;Parent=Phyra79554;constitutive=1;ensembl_phase=2;rank=3 scaffold_41 . CDS 285460 285469 . - 0 ID=Phyra79554;Parent=Phyra79554;rank=2 scaffold_41 . exon 285460 285469 . - . ID=Phyra79554.2;Parent=Phyra79554;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_41 . CDS 285572 285656 . - 0 ID=Phyra79554;Parent=Phyra79554;rank=1 scaffold_41 . exon 285572 285656 . - . ID=Phyra79554.1;Parent=Phyra79554;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 ensembl protein_coding_gene 285824 287162 . + . ID=Phyra79555;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000086;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 285824 287162 . + . ID=Phyra79555;Parent=Phyra79555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 285824 286020 . + 0 ID=Phyra79555;Parent=Phyra79555;rank=1 scaffold_41 . exon 285824 286020 . + . ID=Phyra79555.1;Parent=Phyra79555;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 286062 286099 . + 0 ID=Phyra79555;Parent=Phyra79555;rank=2 scaffold_41 . exon 286062 286099 . + . ID=Phyra79555.2;Parent=Phyra79555;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 286174 286418 . + 0 ID=Phyra79555;Parent=Phyra79555;rank=3 scaffold_41 . exon 286174 286418 . + . ID=Phyra79555.3;Parent=Phyra79555;constitutive=1;ensembl_phase=1;rank=3 scaffold_41 . CDS 286482 287162 . + 0 ID=Phyra79555;Parent=Phyra79555;rank=4 scaffold_41 . exon 286482 287162 . + . ID=Phyra79555.4;Parent=Phyra79555;constitutive=1;rank=4 scaffold_41 ensembl protein_coding_gene 287755 290098 . - . ID=Phyra79556;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000087;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 287755 290098 . - . ID=Phyra79556;Parent=Phyra79556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 287755 287873 . - 0 ID=Phyra79556;Parent=Phyra79556;rank=5 scaffold_41 . exon 287755 287873 . - . ID=Phyra79556.5;Parent=Phyra79556;constitutive=1;ensembl_phase=1;rank=5 scaffold_41 . CDS 288152 288299 . - 0 ID=Phyra79556;Parent=Phyra79556;rank=4 scaffold_41 . exon 288152 288299 . - . ID=Phyra79556.4;Parent=Phyra79556;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_41 . CDS 288419 288700 . - 0 ID=Phyra79556;Parent=Phyra79556;rank=3 scaffold_41 . exon 288419 288700 . - . ID=Phyra79556.3;Parent=Phyra79556;constitutive=1;rank=3 scaffold_41 . CDS 288772 289832 . - 0 ID=Phyra79556;Parent=Phyra79556;rank=2 scaffold_41 . exon 288772 289832 . - . ID=Phyra79556.2;Parent=Phyra79556;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 290056 290098 . - 0 ID=Phyra79556;Parent=Phyra79556;rank=1 scaffold_41 . biological_region 289191 289196 0.999 + . logic_name=eponine scaffold_41 . biological_region 289666 289667 0.999 + . logic_name=eponine scaffold_41 . biological_region 290836 290841 0.999 - . logic_name=eponine scaffold_41 . biological_region 291554 291554 0.999 + . logic_name=eponine scaffold_41 . biological_region 292098 292103 0.999 + . logic_name=eponine scaffold_41 . biological_region 292365 292370 0.999 - . logic_name=eponine scaffold_41 . biological_region 292420 292424 0.999 + . logic_name=eponine scaffold_41 . biological_region 292543 292548 0.999 + . logic_name=eponine scaffold_41 . biological_region 292674 292677 0.999 + . logic_name=eponine scaffold_41 . biological_region 292934 292935 0.999 + . logic_name=eponine scaffold_41 . biological_region 292951 292956 0.999 + . logic_name=eponine scaffold_41 . biological_region 293024 293024 0.999 - . logic_name=eponine scaffold_41 . biological_region 293344 293346 0.999 - . logic_name=eponine scaffold_41 . repeat_region 295361 295422 . ? . description=trf scaffold_41 . repeat_region 295370 295434 . ? . description=trf scaffold_41 . repeat_region 295375 295434 . ? . description=trf scaffold_41 . repeat_region 295408 295448 . ? . description=trf scaffold_41 . biological_region 295770 295773 0.999 + . logic_name=eponine scaffold_41 . biological_region 296615 296621 0.999 + . logic_name=eponine scaffold_41 . biological_region 298184 298184 0.999 + . logic_name=eponine scaffold_41 . repeat_region 298193 298216 . ? . description=trf scaffold_41 . biological_region 298273 298275 0.999 + . logic_name=eponine scaffold_41 . repeat_region 298523 298581 . ? . description=dust scaffold_41 . biological_region 298545 298548 0.999 - . logic_name=eponine scaffold_41 . biological_region 298755 298755 0.999 + . logic_name=eponine scaffold_41 . repeat_region 298764 298787 . ? . description=trf scaffold_41 . biological_region 298844 298846 0.999 + . logic_name=eponine scaffold_41 ensembl tRNA_gene 298606 298677 . + . ID=EPrPRAG00000000104;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_41 ensembl transcript 298606 298677 . + . ID=EPrPRAT00000000104;Parent=EPrPRAG00000000104;biotype=tRNA;logic_name=ncrna_eg scaffold_41 . exon 298606 298677 . + . ID=EPrPRAE00000000104;Parent=EPrPRAT00000000104;constitutive=1;rank=1 scaffold_41 . exon 290056 290098 . - . ID=Phyra79556.1;Parent=Phyra79556;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 ensembl protein_coding_gene 291094 293551 . - . ID=Phyra79557;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000088;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 291094 293551 . - . ID=Phyra79557;Parent=Phyra79557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 291094 292003 . - 0 ID=Phyra79557;Parent=Phyra79557;rank=3 scaffold_41 . exon 291094 292003 . - . ID=Phyra79557.3;Parent=Phyra79557;constitutive=1;ensembl_phase=2;rank=3 scaffold_41 . CDS 292047 293296 . - 0 ID=Phyra79557;Parent=Phyra79557;rank=2 scaffold_41 . exon 292047 293296 . - . ID=Phyra79557.2;Parent=Phyra79557;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_41 . CDS 293549 293551 . - 0 ID=Phyra79557;Parent=Phyra79557;rank=1 scaffold_41 . exon 293549 293551 . - . ID=Phyra79557.1;Parent=Phyra79557;constitutive=1;rank=1 scaffold_41 ensembl tRNA_gene 300319 300390 . + . ID=EPrPRAG00000000031;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_41 ensembl transcript 300319 300390 . + . ID=EPrPRAT00000000031;Parent=EPrPRAG00000000031;biotype=tRNA;logic_name=ncrna_eg scaffold_41 ensembl tRNA_gene 299748 299819 . + . ID=EPrPRAG00000000108;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_41 ensembl transcript 299748 299819 . + . ID=EPrPRAT00000000108;Parent=EPrPRAG00000000108;biotype=tRNA;logic_name=ncrna_eg scaffold_41 ensembl tRNA_gene 299177 299248 . + . ID=EPrPRAG00000000177;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_41 ensembl transcript 299177 299248 . + . ID=EPrPRAT00000000177;Parent=EPrPRAG00000000177;biotype=tRNA;logic_name=ncrna_eg scaffold_41 . exon 300319 300390 . + . ID=EPrPRAE00000000031;Parent=EPrPRAT00000000031;constitutive=1;rank=1 scaffold_41 . exon 299748 299819 . + . ID=EPrPRAE00000000108;Parent=EPrPRAT00000000108;constitutive=1;rank=1 scaffold_41 . exon 299177 299248 . + . ID=EPrPRAE00000000177;Parent=EPrPRAT00000000177;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 302219 304529 . - . ID=Phyra79558;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000089;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 302219 304529 . - . ID=Phyra79558;Parent=Phyra79558;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 302219 302907 . - 0 ID=Phyra79558;Parent=Phyra79558;rank=4 scaffold_41 . exon 302219 302907 . - . ID=Phyra79558.4;Parent=Phyra79558;constitutive=1;ensembl_phase=1;rank=4 scaffold_41 . CDS 303573 303783 . - 0 ID=Phyra79558;Parent=Phyra79558;rank=3 scaffold_41 . exon 303573 303783 . - . ID=Phyra79558.3;Parent=Phyra79558;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_41 . CDS 303881 304138 . - 0 ID=Phyra79558;Parent=Phyra79558;rank=2 scaffold_41 . exon 303881 304138 . - . ID=Phyra79558.2;Parent=Phyra79558;constitutive=1;rank=2 scaffold_41 . CDS 304293 304529 . - 0 ID=Phyra79558;Parent=Phyra79558;rank=1 scaffold_41 . exon 304293 304529 . - . ID=Phyra79558.1;Parent=Phyra79558;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 307422 312407 . - . ID=Phyra79559;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000090;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 307422 312407 . - . ID=Phyra79559;Parent=Phyra79559;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 307422 309969 . - 0 ID=Phyra79559;Parent=Phyra79559;rank=5 scaffold_41 . exon 307422 309969 . - . ID=Phyra79559.5;Parent=Phyra79559;constitutive=1;ensembl_phase=2;rank=5 scaffold_41 . CDS 310029 310108 . - 0 ID=Phyra79559;Parent=Phyra79559;rank=4 scaffold_41 . CDS 311027 311187 . - 0 ID=Phyra79559;Parent=Phyra79559;rank=3 scaffold_41 . CDS 311527 312112 . - 0 ID=Phyra79559;Parent=Phyra79559;rank=2 scaffold_41 . CDS 312201 312407 . - 0 ID=Phyra79559;Parent=Phyra79559;rank=1 scaffold_41 . biological_region 309097 309100 0.999 + . logic_name=eponine scaffold_41 . biological_region 309683 309689 0.999 + . logic_name=eponine scaffold_41 . biological_region 309725 309728 0.999 - . logic_name=eponine scaffold_41 . biological_region 309780 309784 0.999 + . logic_name=eponine scaffold_41 . biological_region 309806 309808 0.999 + . logic_name=eponine scaffold_41 . biological_region 309818 309821 0.999 + . logic_name=eponine scaffold_41 . biological_region 309922 309927 0.999 - . logic_name=eponine scaffold_41 . repeat_region 310577 310584 . ? . description=dust scaffold_41 . biological_region 312599 312601 0.999 + . logic_name=eponine scaffold_41 . biological_region 314591 314593 0.999 - . logic_name=eponine scaffold_41 . biological_region 314656 314658 0.999 - . logic_name=eponine scaffold_41 . biological_region 315157 315157 0.999 + . logic_name=eponine scaffold_41 . exon 310029 310108 . - . ID=Phyra79559.4;Parent=Phyra79559;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_41 . exon 311027 311187 . - . ID=Phyra79559.3;Parent=Phyra79559;constitutive=1;ensembl_phase=1;rank=3 scaffold_41 . exon 311527 312112 . - . ID=Phyra79559.2;Parent=Phyra79559;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_41 . exon 312201 312407 . - . ID=Phyra79559.1;Parent=Phyra79559;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 312607 314155 . + . ID=Phyra79560;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000091;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 312607 314155 . + . ID=Phyra79560;Parent=Phyra79560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 312607 312723 . + 0 ID=Phyra79560;Parent=Phyra79560;rank=1 scaffold_41 . exon 312607 312723 . + . ID=Phyra79560.1;Parent=Phyra79560;constitutive=1;rank=1 scaffold_41 . CDS 312798 313172 . + 0 ID=Phyra79560;Parent=Phyra79560;rank=2 scaffold_41 . exon 312798 313172 . + . ID=Phyra79560.2;Parent=Phyra79560;constitutive=1;rank=2 scaffold_41 . CDS 313244 313366 . + 0 ID=Phyra79560;Parent=Phyra79560;rank=3 scaffold_41 . exon 313244 313366 . + . ID=Phyra79560.3;Parent=Phyra79560;constitutive=1;rank=3 scaffold_41 . CDS 313578 313658 . + 0 ID=Phyra79560;Parent=Phyra79560;rank=4 scaffold_41 . exon 313578 313658 . + . ID=Phyra79560.4;Parent=Phyra79560;constitutive=1;rank=4 scaffold_41 . CDS 313761 313824 . + 0 ID=Phyra79560;Parent=Phyra79560;rank=5 scaffold_41 . exon 313761 313824 . + . ID=Phyra79560.5;Parent=Phyra79560;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_41 . CDS 313881 314155 . + 0 ID=Phyra79560;Parent=Phyra79560;rank=6 scaffold_41 . exon 313881 314155 . + . ID=Phyra79560.6;Parent=Phyra79560;constitutive=1;ensembl_phase=1;rank=6 scaffold_41 ensembl protein_coding_gene 314462 316096 . + . ID=Phyra79561;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000092;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 314462 316096 . + . ID=Phyra79561;Parent=Phyra79561;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 314462 316096 . + 0 ID=Phyra79561;Parent=Phyra79561;rank=1 scaffold_41 . exon 314462 316096 . + . ID=Phyra79561.1;Parent=Phyra79561;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 325546 326769 . + . ID=Phyra79563;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000094;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 325546 326769 . + . ID=Phyra79563;Parent=Phyra79563;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 325546 326769 . + 0 ID=Phyra79563;Parent=Phyra79563;rank=1 scaffold_41 . exon 325546 326769 . + . ID=Phyra79563.1;Parent=Phyra79563;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 327226 329600 . - . ID=Phyra79564;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000095;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 327226 329600 . - . ID=Phyra79564;Parent=Phyra79564;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 327226 327986 . - 0 ID=Phyra79564;Parent=Phyra79564;rank=3 scaffold_41 . exon 327226 327986 . - . ID=Phyra79564.3;Parent=Phyra79564;constitutive=1;ensembl_phase=1;rank=3 scaffold_41 . CDS 328148 328199 . - 0 ID=Phyra79564;Parent=Phyra79564;rank=2 scaffold_41 . exon 328148 328199 . - . ID=Phyra79564.2;Parent=Phyra79564;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_41 . CDS 328230 329600 . - 0 ID=Phyra79564;Parent=Phyra79564;rank=1 scaffold_41 . exon 328230 329600 . - . ID=Phyra79564.1;Parent=Phyra79564;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 321383 324998 . + . ID=Phyra95403;biotype=protein_coding;external_name=C_scaffold_41000025;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 321383 324998 . + . ID=Phyra95403;Parent=Phyra95403;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 321383 321456 . + 0 ID=Phyra95403;Parent=Phyra95403;rank=1 scaffold_41 . exon 321383 321456 . + . ID=Phyra95403.1;Parent=Phyra95403;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 321529 321619 . + 0 ID=Phyra95403;Parent=Phyra95403;rank=2 scaffold_41 . exon 321529 321619 . + . ID=Phyra95403.2;Parent=Phyra95403;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 321677 322153 . + 0 ID=Phyra95403;Parent=Phyra95403;rank=3 scaffold_41 . exon 321677 322153 . + . ID=Phyra95403.3;Parent=Phyra95403;constitutive=1;rank=3 scaffold_41 . CDS 322221 322490 . + 0 ID=Phyra95403;Parent=Phyra95403;rank=4 scaffold_41 . exon 322221 322490 . + . ID=Phyra95403.4;Parent=Phyra95403;constitutive=1;rank=4 scaffold_41 . CDS 322560 322747 . + 0 ID=Phyra95403;Parent=Phyra95403;rank=5 scaffold_41 . exon 322560 322747 . + . ID=Phyra95403.5;Parent=Phyra95403;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_41 . CDS 322793 322997 . + 0 ID=Phyra95403;Parent=Phyra95403;rank=6 scaffold_41 . exon 322793 322997 . + . ID=Phyra95403.6;Parent=Phyra95403;constitutive=1;ensembl_phase=2;rank=6 scaffold_41 . CDS 323050 323213 . + 0 ID=Phyra95403;Parent=Phyra95403;rank=7 scaffold_41 . exon 323050 323213 . + . ID=Phyra95403.7;Parent=Phyra95403;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_41 . CDS 323287 323360 . + 0 ID=Phyra95403;Parent=Phyra95403;rank=8 scaffold_41 . exon 323287 323360 . + . ID=Phyra95403.8;Parent=Phyra95403;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_41 . CDS 323431 323881 . + 0 ID=Phyra95403;Parent=Phyra95403;rank=9 scaffold_41 . exon 323431 323881 . + . ID=Phyra95403.9;Parent=Phyra95403;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_41 . CDS 323978 324569 . + 0 ID=Phyra95403;Parent=Phyra95403;rank=10 scaffold_41 . exon 323978 324569 . + . ID=Phyra95403.10;Parent=Phyra95403;constitutive=1;ensembl_phase=2;rank=10 scaffold_41 . CDS 324615 324998 . + 0 ID=Phyra95403;Parent=Phyra95403;rank=11 scaffold_41 . exon 324615 324998 . + . ID=Phyra95403.11;Parent=Phyra95403;constitutive=1;rank=11 scaffold_41 . biological_region 329351 329355 0.999 + . logic_name=eponine scaffold_41 . biological_region 329500 329503 0.999 + . logic_name=eponine scaffold_41 . biological_region 331662 331668 0.999 + . logic_name=eponine scaffold_41 . biological_region 331680 331681 0.999 - . logic_name=eponine scaffold_41 . repeat_region 332591 332611 . ? . description=trf scaffold_41 . biological_region 332963 332963 0.999 + . logic_name=eponine scaffold_41 . biological_region 333016 333021 0.999 + . logic_name=eponine scaffold_41 . biological_region 333067 333069 0.999 - . logic_name=eponine scaffold_41 . biological_region 333082 333088 0.999 + . logic_name=eponine scaffold_41 . biological_region 333120 333123 0.999 + . logic_name=eponine scaffold_41 . biological_region 333135 333139 0.999 - . logic_name=eponine scaffold_41 . biological_region 333168 333175 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 331071 332543 . + . ID=Phyra79565;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000096;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 331071 332543 . + . ID=Phyra79565;Parent=Phyra79565;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 331071 332543 . + 0 ID=Phyra79565;Parent=Phyra79565;rank=1 scaffold_41 . exon 331071 332543 . + . ID=Phyra79565.1;Parent=Phyra79565;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 332796 333677 . + . ID=Phyra79566;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000097;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 332796 333677 . + . ID=Phyra79566;Parent=Phyra79566;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 332796 333530 . + 0 ID=Phyra79566;Parent=Phyra79566;rank=1 scaffold_41 . exon 332796 333530 . + . ID=Phyra79566.1;Parent=Phyra79566;constitutive=1;rank=1 scaffold_41 . CDS 333606 333677 . + 0 ID=Phyra79566;Parent=Phyra79566;rank=2 scaffold_41 . exon 333606 333677 . + . ID=Phyra79566.2;Parent=Phyra79566;constitutive=1;rank=2 scaffold_41 ensembl protein_coding_gene 340151 341286 . - . ID=Phyra79567;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000098;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 340151 341286 . - . ID=Phyra79567;Parent=Phyra79567;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 340151 340585 . - 0 ID=Phyra79567;Parent=Phyra79567;rank=3 scaffold_41 . exon 340151 340585 . - . ID=Phyra79567.3;Parent=Phyra79567;constitutive=1;rank=3 scaffold_41 . CDS 340652 341151 . - 0 ID=Phyra79567;Parent=Phyra79567;rank=2 scaffold_41 . exon 340652 341151 . - . ID=Phyra79567.2;Parent=Phyra79567;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 341214 341286 . - 0 ID=Phyra79567;Parent=Phyra79567;rank=1 scaffold_41 . exon 341214 341286 . - . ID=Phyra79567.1;Parent=Phyra79567;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 ensembl protein_coding_gene 346143 348748 . - . ID=Phyra79568;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000099;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 346143 348748 . - . ID=Phyra79568;Parent=Phyra79568;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 346143 346418 . - 0 ID=Phyra79568;Parent=Phyra79568;rank=5 scaffold_41 . exon 346143 346418 . - . ID=Phyra79568.5;Parent=Phyra79568;constitutive=1;rank=5 scaffold_41 . CDS 346487 346649 . - 0 ID=Phyra79568;Parent=Phyra79568;rank=4 scaffold_41 . exon 346487 346649 . - . ID=Phyra79568.4;Parent=Phyra79568;constitutive=1;ensembl_phase=2;rank=4 scaffold_41 . CDS 346738 347762 . - 0 ID=Phyra79568;Parent=Phyra79568;rank=3 scaffold_41 . exon 346738 347762 . - . ID=Phyra79568.3;Parent=Phyra79568;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_41 . CDS 347834 348318 . - 0 ID=Phyra79568;Parent=Phyra79568;rank=2 scaffold_41 . exon 347834 348318 . - . ID=Phyra79568.2;Parent=Phyra79568;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 348367 348748 . - 0 ID=Phyra79568;Parent=Phyra79568;rank=1 scaffold_41 . exon 348367 348748 . - . ID=Phyra79568.1;Parent=Phyra79568;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . repeat_region 348805 348863 . ? . description=trf scaffold_41 . repeat_region 348870 348963 . ? . description=trf scaffold_41 . biological_region 349471 349472 0.999 + . logic_name=eponine scaffold_41 . biological_region 349525 349527 0.999 + . logic_name=eponine scaffold_41 . biological_region 349631 349637 0.999 - . logic_name=eponine scaffold_41 . repeat_region 350170 350198 . ? . description=trf scaffold_41 . biological_region 357436 357437 0.999 + . logic_name=eponine scaffold_41 . repeat_region 357733 357782 . ? . description=dust scaffold_41 . repeat_region 358409 358459 . ? . description=dust scaffold_41 ensembl protein_coding_gene 349128 350361 . + . ID=Phyra79569;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000100;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 349128 350361 . + . ID=Phyra79569;Parent=Phyra79569;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 349128 349700 . + 0 ID=Phyra79569;Parent=Phyra79569;rank=1 scaffold_41 . exon 349128 349700 . + . ID=Phyra79569.1;Parent=Phyra79569;constitutive=1;rank=1 scaffold_41 . CDS 349759 349943 . + 0 ID=Phyra79569;Parent=Phyra79569;rank=2 scaffold_41 . exon 349759 349943 . + . ID=Phyra79569.2;Parent=Phyra79569;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_41 . CDS 350019 350361 . + 0 ID=Phyra79569;Parent=Phyra79569;rank=3 scaffold_41 . exon 350019 350361 . + . ID=Phyra79569.3;Parent=Phyra79569;constitutive=1;ensembl_phase=2;rank=3 scaffold_41 ensembl protein_coding_gene 350622 351182 . - . ID=Phyra79570;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000101;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 350622 351182 . - . ID=Phyra79570;Parent=Phyra79570;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 350622 350797 . - 0 ID=Phyra79570;Parent=Phyra79570;rank=3 scaffold_41 . exon 350622 350797 . - . ID=Phyra79570.3;Parent=Phyra79570;constitutive=1;ensembl_phase=1;rank=3 scaffold_41 . CDS 350857 350986 . - 0 ID=Phyra79570;Parent=Phyra79570;rank=2 scaffold_41 . exon 350857 350986 . - . ID=Phyra79570.2;Parent=Phyra79570;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_41 . CDS 351054 351182 . - 0 ID=Phyra79570;Parent=Phyra79570;rank=1 scaffold_41 . exon 351054 351182 . - . ID=Phyra79570.1;Parent=Phyra79570;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 358701 360673 . + . ID=Phyra79573;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000104;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 358701 360673 . + . ID=Phyra79573;Parent=Phyra79573;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 358701 358836 . + 0 ID=Phyra79573;Parent=Phyra79573;rank=1 scaffold_41 . exon 358701 358836 . + . ID=Phyra79573.1;Parent=Phyra79573;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 359029 359450 . + 0 ID=Phyra79573;Parent=Phyra79573;rank=2 scaffold_41 . CDS 359526 359716 . + 0 ID=Phyra79573;Parent=Phyra79573;rank=3 scaffold_41 . CDS 359737 359780 . + 0 ID=Phyra79573;Parent=Phyra79573;rank=4 scaffold_41 . CDS 359839 360174 . + 0 ID=Phyra79573;Parent=Phyra79573;rank=5 scaffold_41 . CDS 360263 360566 . + 0 ID=Phyra79573;Parent=Phyra79573;rank=6 scaffold_41 . CDS 360667 360673 . + 0 ID=Phyra79573;Parent=Phyra79573;rank=7 scaffold_41 ensembl protein_coding_gene 351345 356099 . - . ID=Phyra95409;biotype=protein_coding;external_name=C_scaffold_41000031;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 351345 356099 . - . ID=Phyra95409;Parent=Phyra95409;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 351345 351474 . - 0 ID=Phyra95409;Parent=Phyra95409;rank=14 scaffold_41 . exon 351345 351474 . - . ID=Phyra95409.14;Parent=Phyra95409;constitutive=1;ensembl_phase=2;rank=14 scaffold_41 . CDS 351545 351862 . - 0 ID=Phyra95409;Parent=Phyra95409;rank=13 scaffold_41 . exon 351545 351862 . - . ID=Phyra95409.13;Parent=Phyra95409;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=13 scaffold_41 . CDS 351921 352262 . - 0 ID=Phyra95409;Parent=Phyra95409;rank=12 scaffold_41 . exon 351921 352262 . - . ID=Phyra95409.12;Parent=Phyra95409;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=12 scaffold_41 . CDS 352393 352593 . - 0 ID=Phyra95409;Parent=Phyra95409;rank=11 scaffold_41 . exon 352393 352593 . - . ID=Phyra95409.11;Parent=Phyra95409;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_41 . CDS 352684 352742 . - 0 ID=Phyra95409;Parent=Phyra95409;rank=10 scaffold_41 . exon 352684 352742 . - . ID=Phyra95409.10;Parent=Phyra95409;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_41 . CDS 352816 352958 . - 0 ID=Phyra95409;Parent=Phyra95409;rank=9 scaffold_41 . exon 352816 352958 . - . ID=Phyra95409.9;Parent=Phyra95409;constitutive=1;ensembl_phase=1;rank=9 scaffold_41 . CDS 353029 353119 . - 0 ID=Phyra95409;Parent=Phyra95409;rank=8 scaffold_41 . exon 353029 353119 . - . ID=Phyra95409.8;Parent=Phyra95409;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_41 . CDS 353200 354335 . - 0 ID=Phyra95409;Parent=Phyra95409;rank=7 scaffold_41 . exon 353200 354335 . - . ID=Phyra95409.7;Parent=Phyra95409;constitutive=1;ensembl_phase=1;rank=7 scaffold_41 . CDS 354645 354794 . - 0 ID=Phyra95409;Parent=Phyra95409;rank=6 scaffold_41 . exon 354645 354794 . - . ID=Phyra95409.6;Parent=Phyra95409;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_41 . CDS 354879 354997 . - 0 ID=Phyra95409;Parent=Phyra95409;rank=5 scaffold_41 . exon 354879 354997 . - . ID=Phyra95409.5;Parent=Phyra95409;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_41 . CDS 355333 355532 . - 0 ID=Phyra95409;Parent=Phyra95409;rank=4 scaffold_41 . exon 355333 355532 . - . ID=Phyra95409.4;Parent=Phyra95409;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_41 . CDS 355596 355722 . - 0 ID=Phyra95409;Parent=Phyra95409;rank=3 scaffold_41 . exon 355596 355722 . - . ID=Phyra95409.3;Parent=Phyra95409;constitutive=1;ensembl_phase=2;rank=3 scaffold_41 . CDS 355792 355880 . - 0 ID=Phyra95409;Parent=Phyra95409;rank=2 scaffold_41 . exon 355792 355880 . - . ID=Phyra95409.2;Parent=Phyra95409;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_41 . CDS 355941 356099 . - 0 ID=Phyra95409;Parent=Phyra95409;rank=1 scaffold_41 . exon 355941 356099 . - . ID=Phyra95409.1;Parent=Phyra95409;constitutive=1;rank=1 scaffold_41 . exon 359029 359450 . + . ID=Phyra79573.2;Parent=Phyra79573;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . exon 359526 359716 . + . ID=Phyra79573.3;Parent=Phyra79573;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_41 . exon 359737 359780 . + . ID=Phyra79573.4;Parent=Phyra79573;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_41 . exon 359839 360174 . + . ID=Phyra79573.5;Parent=Phyra79573;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_41 . exon 360263 360566 . + . ID=Phyra79573.6;Parent=Phyra79573;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_41 . exon 360667 360673 . + . ID=Phyra79573.7;Parent=Phyra79573;constitutive=1;ensembl_phase=2;rank=7 scaffold_41 ensembl protein_coding_gene 361603 363546 . - . ID=Phyra79574;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000105;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 361603 363546 . - . ID=Phyra79574;Parent=Phyra79574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 361603 363546 . - 0 ID=Phyra79574;Parent=Phyra79574;rank=1 scaffold_41 . exon 361603 363546 . - . ID=Phyra79574.1;Parent=Phyra79574;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 364913 366541 . + . ID=Phyra79575;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000106;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 364913 366541 . + . ID=Phyra79575;Parent=Phyra79575;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 364913 366541 . + 0 ID=Phyra79575;Parent=Phyra79575;rank=1 scaffold_41 . exon 364913 366541 . + . ID=Phyra79575.1;Parent=Phyra79575;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 367496 368581 . + . ID=Phyra79576;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000107;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 367496 368581 . + . ID=Phyra79576;Parent=Phyra79576;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 367496 368581 . + 0 ID=Phyra79576;Parent=Phyra79576;rank=1 scaffold_41 . exon 367496 368581 . + . ID=Phyra79576.1;Parent=Phyra79576;constitutive=1;rank=1 scaffold_41 . biological_region 370248 370248 0.999 - . logic_name=eponine scaffold_41 . repeat_region 376337 376385 . ? . description=trf scaffold_41 ensembl protein_coding_gene 373908 374915 . - . ID=Phyra48595;biotype=protein_coding;external_name=gwEuk.41.38.1;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 373908 374915 . - . ID=Phyra48595;Parent=Phyra48595;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 373908 374667 . - 0 ID=Phyra48595;Parent=Phyra48595;rank=2 scaffold_41 . exon 373908 374667 . - . ID=Phyra48595.2;Parent=Phyra48595;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 374767 374915 . - 0 ID=Phyra48595;Parent=Phyra48595;rank=1 scaffold_41 . exon 374767 374915 . - . ID=Phyra48595.1;Parent=Phyra48595;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 ensembl protein_coding_gene 377914 380448 . + . ID=Phyra71714;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_41000010;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 377914 380448 . + . ID=Phyra71714;Parent=Phyra71714;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 377914 380448 . + 0 ID=Phyra71714;Parent=Phyra71714;rank=1 scaffold_41 . exon 377914 380448 . + . ID=Phyra71714.1;Parent=Phyra71714;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 370109 372166 . + . ID=Phyra79577;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000108;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 370109 372166 . + . ID=Phyra79577;Parent=Phyra79577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 370109 372166 . + 0 ID=Phyra79577;Parent=Phyra79577;rank=1 scaffold_41 . exon 370109 372166 . + . ID=Phyra79577.1;Parent=Phyra79577;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 375324 377798 . + . ID=Phyra79578;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000109;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 375324 377798 . + . ID=Phyra79578;Parent=Phyra79578;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 375324 375626 . + 0 ID=Phyra79578;Parent=Phyra79578;rank=1 scaffold_41 . exon 375324 375626 . + . ID=Phyra79578.1;Parent=Phyra79578;constitutive=1;rank=1 scaffold_41 . CDS 375696 375963 . + 0 ID=Phyra79578;Parent=Phyra79578;rank=2 scaffold_41 . exon 375696 375963 . + . ID=Phyra79578.2;Parent=Phyra79578;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_41 . CDS 376019 376131 . + 0 ID=Phyra79578;Parent=Phyra79578;rank=3 scaffold_41 . exon 376019 376131 . + . ID=Phyra79578.3;Parent=Phyra79578;constitutive=1;ensembl_phase=1;rank=3 scaffold_41 . CDS 376492 377798 . + 0 ID=Phyra79578;Parent=Phyra79578;rank=4 scaffold_41 . exon 376492 377798 . + . ID=Phyra79578.4;Parent=Phyra79578;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_41 . repeat_region 385048 385059 . ? . description=dust scaffold_41 ensembl protein_coding_gene 381072 384200 . + . ID=Phyra79580;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000111;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 381072 384200 . + . ID=Phyra79580;Parent=Phyra79580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 381072 384200 . + 0 ID=Phyra79580;Parent=Phyra79580;rank=1 scaffold_41 . exon 381072 384200 . + . ID=Phyra79580.1;Parent=Phyra79580;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 384753 386983 . + . ID=Phyra79581;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000112;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 384753 386983 . + . ID=Phyra79581;Parent=Phyra79581;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 384753 384989 . + 0 ID=Phyra79581;Parent=Phyra79581;rank=1 scaffold_41 . exon 384753 384989 . + . ID=Phyra79581.1;Parent=Phyra79581;constitutive=1;rank=1 scaffold_41 . CDS 385070 386983 . + 0 ID=Phyra79581;Parent=Phyra79581;rank=2 scaffold_41 . exon 385070 386983 . + . ID=Phyra79581.2;Parent=Phyra79581;constitutive=1;rank=2 scaffold_41 ensembl protein_coding_gene 388112 390607 . - . ID=Phyra79582;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000113;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 388112 390607 . - . ID=Phyra79582;Parent=Phyra79582;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 388112 390607 . - 0 ID=Phyra79582;Parent=Phyra79582;rank=1 scaffold_41 . exon 388112 390607 . - . ID=Phyra79582.1;Parent=Phyra79582;constitutive=1;rank=1 scaffold_41 . repeat_region 388406 389116 . ? . description=trf scaffold_41 . repeat_region 388413 389152 . ? . description=trf scaffold_41 . repeat_region 393167 393261 . ? . description=trf scaffold_41 . repeat_region 393177 393261 . ? . description=trf scaffold_41 . repeat_region 393177 393292 . ? . description=trf scaffold_41 . repeat_region 393308 393364 . ? . description=trf scaffold_41 . repeat_region 396592 396902 . ? . description=trf scaffold_41 . repeat_region 396592 396902 . ? . description=trf scaffold_41 . repeat_region 396901 397753 . ? . description=trf scaffold_41 . repeat_region 396922 397037 . ? . description=trf scaffold_41 . repeat_region 397015 397133 . ? . description=trf scaffold_41 . repeat_region 397169 397254 . ? . description=trf scaffold_41 . repeat_region 397305 397423 . ? . description=trf scaffold_41 . repeat_region 397401 397519 . ? . description=trf scaffold_41 . repeat_region 397497 397615 . ? . description=trf scaffold_41 . repeat_region 397593 397736 . ? . description=trf scaffold_41 ensembl protein_coding_gene 396873 397771 . - . ID=Phyra48616;biotype=protein_coding;external_name=gwEuk.41.59.1;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 396873 397771 . - . ID=Phyra48616;Parent=Phyra48616;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 396873 397171 . - 0 ID=Phyra48616;Parent=Phyra48616;rank=2 scaffold_41 . exon 396873 397171 . - . ID=Phyra48616.2;Parent=Phyra48616;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 397303 397771 . - 0 ID=Phyra48616;Parent=Phyra48616;rank=1 scaffold_41 . exon 397303 397771 . - . ID=Phyra48616.1;Parent=Phyra48616;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 ensembl protein_coding_gene 392292 393832 . + . ID=Phyra79583;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000114;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 392292 393832 . + . ID=Phyra79583;Parent=Phyra79583;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 392292 392298 . + 0 ID=Phyra79583;Parent=Phyra79583;rank=1 scaffold_41 . exon 392292 392298 . + . ID=Phyra79583.1;Parent=Phyra79583;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 392741 392797 . + 0 ID=Phyra79583;Parent=Phyra79583;rank=2 scaffold_41 . exon 392741 392797 . + . ID=Phyra79583.2;Parent=Phyra79583;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 392933 393005 . + 0 ID=Phyra79583;Parent=Phyra79583;rank=3 scaffold_41 . exon 392933 393005 . + . ID=Phyra79583.3;Parent=Phyra79583;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_41 . CDS 393083 393419 . + 0 ID=Phyra79583;Parent=Phyra79583;rank=4 scaffold_41 . exon 393083 393419 . + . ID=Phyra79583.4;Parent=Phyra79583;constitutive=1;ensembl_phase=2;rank=4 scaffold_41 . CDS 393457 393562 . + 0 ID=Phyra79583;Parent=Phyra79583;rank=5 scaffold_41 . exon 393457 393562 . + . ID=Phyra79583.5;Parent=Phyra79583;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_41 . CDS 393684 393832 . + 0 ID=Phyra79583;Parent=Phyra79583;rank=6 scaffold_41 . exon 393684 393832 . + . ID=Phyra79583.6;Parent=Phyra79583;constitutive=1;ensembl_phase=1;rank=6 scaffold_41 . repeat_region 399540 403641 . ? . description=dust scaffold_41 ensembl protein_coding_gene 404073 405616 . + . ID=Phyra79585;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000116;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 404073 405616 . + . ID=Phyra79585;Parent=Phyra79585;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 404073 404144 . + 0 ID=Phyra79585;Parent=Phyra79585;rank=1 scaffold_41 . exon 404073 404144 . + . ID=Phyra79585.1;Parent=Phyra79585;constitutive=1;rank=1 scaffold_41 . CDS 404235 404384 . + 0 ID=Phyra79585;Parent=Phyra79585;rank=2 scaffold_41 . exon 404235 404384 . + . ID=Phyra79585.2;Parent=Phyra79585;constitutive=1;rank=2 scaffold_41 . CDS 404526 405234 . + 0 ID=Phyra79585;Parent=Phyra79585;rank=3 scaffold_41 . exon 404526 405234 . + . ID=Phyra79585.3;Parent=Phyra79585;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_41 . CDS 405302 405471 . + 0 ID=Phyra79585;Parent=Phyra79585;rank=4 scaffold_41 . exon 405302 405471 . + . ID=Phyra79585.4;Parent=Phyra79585;constitutive=1;ensembl_phase=1;rank=4 scaffold_41 . CDS 405593 405616 . + 0 ID=Phyra79585;Parent=Phyra79585;rank=5 scaffold_41 . exon 405593 405616 . + . ID=Phyra79585.5;Parent=Phyra79585;constitutive=1;rank=5 scaffold_41 . biological_region 417415 417419 0.999 - . logic_name=eponine scaffold_41 . biological_region 417660 417664 0.999 + . logic_name=eponine scaffold_41 ensembl protein_coding_gene 410239 415742 . + . ID=Phyra79586;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000117;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 410239 415742 . + . ID=Phyra79586;Parent=Phyra79586;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 410239 411123 . + 0 ID=Phyra79586;Parent=Phyra79586;rank=1 scaffold_41 . exon 410239 411123 . + . ID=Phyra79586.1;Parent=Phyra79586;constitutive=1;rank=1 scaffold_41 . CDS 411248 411838 . + 0 ID=Phyra79586;Parent=Phyra79586;rank=2 scaffold_41 . exon 411248 411838 . + . ID=Phyra79586.2;Parent=Phyra79586;constitutive=1;rank=2 scaffold_41 . CDS 411894 412121 . + 0 ID=Phyra79586;Parent=Phyra79586;rank=3 scaffold_41 . exon 411894 412121 . + . ID=Phyra79586.3;Parent=Phyra79586;constitutive=1;rank=3 scaffold_41 . CDS 412326 412492 . + 0 ID=Phyra79586;Parent=Phyra79586;rank=4 scaffold_41 . exon 412326 412492 . + . ID=Phyra79586.4;Parent=Phyra79586;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_41 . CDS 412577 412588 . + 0 ID=Phyra79586;Parent=Phyra79586;rank=5 scaffold_41 . exon 412577 412588 . + . ID=Phyra79586.5;Parent=Phyra79586;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_41 . CDS 412656 413246 . + 0 ID=Phyra79586;Parent=Phyra79586;rank=6 scaffold_41 . exon 412656 413246 . + . ID=Phyra79586.6;Parent=Phyra79586;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_41 . CDS 413559 413871 . + 0 ID=Phyra79586;Parent=Phyra79586;rank=7 scaffold_41 . exon 413559 413871 . + . ID=Phyra79586.7;Parent=Phyra79586;constitutive=1;ensembl_phase=2;rank=7 scaffold_41 . CDS 413927 414154 . + 0 ID=Phyra79586;Parent=Phyra79586;rank=8 scaffold_41 . exon 413927 414154 . + . ID=Phyra79586.8;Parent=Phyra79586;constitutive=1;rank=8 scaffold_41 . CDS 414359 414525 . + 0 ID=Phyra79586;Parent=Phyra79586;rank=9 scaffold_41 . exon 414359 414525 . + . ID=Phyra79586.9;Parent=Phyra79586;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_41 . CDS 414610 414621 . + 0 ID=Phyra79586;Parent=Phyra79586;rank=10 scaffold_41 . exon 414610 414621 . + . ID=Phyra79586.10;Parent=Phyra79586;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_41 . CDS 414689 415279 . + 0 ID=Phyra79586;Parent=Phyra79586;rank=11 scaffold_41 . exon 414689 415279 . + . ID=Phyra79586.11;Parent=Phyra79586;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_41 . CDS 415466 415742 . + 0 ID=Phyra79586;Parent=Phyra79586;rank=12 scaffold_41 . exon 415466 415742 . + . ID=Phyra79586.12;Parent=Phyra79586;constitutive=1;ensembl_phase=2;rank=12 scaffold_41 . repeat_region 418140 419091 . ? . description=dust scaffold_41 . repeat_region 420072 420106 . ? . description=trf scaffold_41 . repeat_region 420173 420226 . ? . description=dust scaffold_41 . repeat_region 420179 420243 . ? . description=trf scaffold_41 . repeat_region 422688 422699 . ? . description=dust scaffold_41 . repeat_region 425654 427795 . ? . description=dust scaffold_41 ensembl protein_coding_gene 419723 421993 . - . ID=Phyra79587;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000118;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 419723 421993 . - . ID=Phyra79587;Parent=Phyra79587;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 419723 419727 . - 0 ID=Phyra79587;Parent=Phyra79587;rank=5 scaffold_41 . exon 419723 419727 . - . ID=Phyra79587.5;Parent=Phyra79587;constitutive=1;ensembl_phase=1;rank=5 scaffold_41 . CDS 419817 420290 . - 0 ID=Phyra79587;Parent=Phyra79587;rank=4 scaffold_41 . exon 419817 420290 . - . ID=Phyra79587.4;Parent=Phyra79587;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_41 . CDS 420329 420811 . - 0 ID=Phyra79587;Parent=Phyra79587;rank=3 scaffold_41 . exon 420329 420811 . - . ID=Phyra79587.3;Parent=Phyra79587;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_41 . CDS 420914 421367 . - 0 ID=Phyra79587;Parent=Phyra79587;rank=2 scaffold_41 . exon 420914 421367 . - . ID=Phyra79587.2;Parent=Phyra79587;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_41 . CDS 421400 421993 . - 0 ID=Phyra79587;Parent=Phyra79587;rank=1 scaffold_41 . exon 421400 421993 . - . ID=Phyra79587.1;Parent=Phyra79587;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 423151 423779 . - . ID=Phyra79588;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000119;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 423151 423779 . - . ID=Phyra79588;Parent=Phyra79588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 423151 423680 . - 0 ID=Phyra79588;Parent=Phyra79588;rank=2 scaffold_41 . exon 423151 423680 . - . ID=Phyra79588.2;Parent=Phyra79588;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 423749 423779 . - 0 ID=Phyra79588;Parent=Phyra79588;rank=1 scaffold_41 . exon 423749 423779 . - . ID=Phyra79588.1;Parent=Phyra79588;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 ensembl protein_coding_gene 424900 425316 . + . ID=Phyra79589;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000120;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 424900 425316 . + . ID=Phyra79589;Parent=Phyra79589;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 424900 425316 . + 0 ID=Phyra79589;Parent=Phyra79589;rank=1 scaffold_41 . exon 424900 425316 . + . ID=Phyra79589.1;Parent=Phyra79589;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 428047 428544 . - . ID=Phyra79590;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_41000121;logic_name=jgi_phyra1 scaffold_41 ensembl transcript 428047 428544 . - . ID=Phyra79590;Parent=Phyra79590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_41 . CDS 428047 428069 . - 0 ID=Phyra79590;Parent=Phyra79590;rank=2 scaffold_41 . exon 428047 428069 . - . ID=Phyra79590.2;Parent=Phyra79590;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 428096 428543 . - 0 ID=Phyra79590;Parent=Phyra79590;rank=1 scaffold_41 . exon 428096 428544 . - . ID=Phyra79590.1;Parent=Phyra79590;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_40 1 431497 scaffold_40 . repeat_region 424 436 . ? . description=dust scaffold_40 . repeat_region 855 866 . ? . description=dust scaffold_40 . repeat_region 1357 1808 . ? . description=dust scaffold_40 . repeat_region 2177 2388 . - . description=GypsyPi-1c_LTR scaffold_40 . repeat_region 2428 2581 . + . description=GypsyPi-1c_I-int scaffold_40 . repeat_region 2844 3037 . + . description=GypsyPi-1c_I-int scaffold_40 . repeat_region 3605 3657 . ? . description=trf scaffold_40 . repeat_region 3605 3661 . ? . description=trf scaffold_40 . repeat_region 3777 3835 . ? . description=dust scaffold_40 . repeat_region 4503 4536 . ? . description=trf scaffold_40 . repeat_region 4503 4553 . ? . description=trf scaffold_40 . repeat_region 6616 6665 . ? . description=dust scaffold_40 ensembl protein_coding_gene 3861 4214 . + . ID=Phyra79388;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000001;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 3861 4214 . + . ID=Phyra79388;Parent=Phyra79388;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 3861 4214 . + 0 ID=Phyra79388;Parent=Phyra79388;rank=1 scaffold_40 . exon 3861 4214 . + . ID=Phyra79388.1;Parent=Phyra79388;constitutive=1;rank=1 scaffold_40 . biological_region 10845 10853 0.999 - . logic_name=eponine scaffold_40 . biological_region 14273 14276 0.999 + . logic_name=eponine scaffold_40 . biological_region 15611 15612 0.999 - . logic_name=eponine scaffold_40 . biological_region 15873 15875 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 10674 11846 . + . ID=Phyra79389;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000002;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 10674 11846 . + . ID=Phyra79389;Parent=Phyra79389;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 10674 11846 . + 0 ID=Phyra79389;Parent=Phyra79389;rank=1 scaffold_40 . exon 10674 11846 . + . ID=Phyra79389.1;Parent=Phyra79389;constitutive=1;rank=1 scaffold_40 . repeat_region 20187 20196 . ? . description=dust scaffold_40 . repeat_region 26455 26472 . ? . description=dust scaffold_40 . repeat_region 26671 26703 . ? . description=trf scaffold_40 . biological_region 40987 40989 0.999 + . logic_name=eponine scaffold_40 . biological_region 41217 41219 0.999 + . logic_name=eponine scaffold_40 . biological_region 41222 41226 0.999 - . logic_name=eponine scaffold_40 . biological_region 42066 42066 0.999 + . logic_name=eponine scaffold_40 . biological_region 42068 42070 0.999 - . logic_name=eponine scaffold_40 . biological_region 42115 42123 0.999 - . logic_name=eponine scaffold_40 . biological_region 42169 42173 0.999 - . logic_name=eponine scaffold_40 . biological_region 44966 44966 0.999 - . logic_name=eponine scaffold_40 . biological_region 46055 46055 0.999 - . logic_name=eponine scaffold_40 . repeat_region 46424 46465 . ? . description=trf scaffold_40 . biological_region 46454 46456 0.999 - . logic_name=eponine scaffold_40 . biological_region 46544 46548 0.999 - . logic_name=eponine scaffold_40 . biological_region 47327 47328 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 40201 42573 . + . ID=Phyra79390;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000003;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 40201 42573 . + . ID=Phyra79390;Parent=Phyra79390;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 40201 42573 . + 0 ID=Phyra79390;Parent=Phyra79390;rank=1 scaffold_40 . exon 40201 42573 . + . ID=Phyra79390.1;Parent=Phyra79390;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 43478 45727 . + . ID=Phyra79391;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000004;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 43478 45727 . + . ID=Phyra79391;Parent=Phyra79391;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 43478 45727 . + 0 ID=Phyra79391;Parent=Phyra79391;rank=1 scaffold_40 . exon 43478 45727 . + . ID=Phyra79391.1;Parent=Phyra79391;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 46410 48938 . + . ID=Phyra79392;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000005;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 46410 48938 . + . ID=Phyra79392;Parent=Phyra79392;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 46410 48938 . + 0 ID=Phyra79392;Parent=Phyra79392;rank=1 scaffold_40 . exon 46410 48938 . + . ID=Phyra79392.1;Parent=Phyra79392;constitutive=1;rank=1 scaffold_40 . repeat_region 55858 60994 . ? . description=dust scaffold_40 ensembl protein_coding_gene 51597 54377 . + . ID=Phyra79393;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000006;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 51597 54377 . + . ID=Phyra79393;Parent=Phyra79393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 51597 54377 . + 0 ID=Phyra79393;Parent=Phyra79393;rank=1 scaffold_40 . exon 51597 54377 . + . ID=Phyra79393.1;Parent=Phyra79393;constitutive=1;rank=1 scaffold_40 . biological_region 64840 64842 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 62621 64564 . + . ID=Phyra79394;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000007;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 62621 64564 . + . ID=Phyra79394;Parent=Phyra79394;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 62621 62759 . + 0 ID=Phyra79394;Parent=Phyra79394;rank=1 scaffold_40 . exon 62621 62759 . + . ID=Phyra79394.1;Parent=Phyra79394;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 62830 64322 . + 0 ID=Phyra79394;Parent=Phyra79394;rank=2 scaffold_40 . exon 62830 64322 . + . ID=Phyra79394.2;Parent=Phyra79394;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 . CDS 64394 64450 . + 0 ID=Phyra79394;Parent=Phyra79394;rank=3 scaffold_40 . exon 64394 64450 . + . ID=Phyra79394.3;Parent=Phyra79394;constitutive=1;rank=3 scaffold_40 . CDS 64529 64564 . + 0 ID=Phyra79394;Parent=Phyra79394;rank=4 scaffold_40 . exon 64529 64564 . + . ID=Phyra79394.4;Parent=Phyra79394;constitutive=1;rank=4 scaffold_40 ensembl protein_coding_gene 64710 65123 . - . ID=Phyra79395;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000008;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 64710 65123 . - . ID=Phyra79395;Parent=Phyra79395;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 64710 65123 . - 0 ID=Phyra79395;Parent=Phyra79395;rank=1 scaffold_40 . exon 64710 65123 . - . ID=Phyra79395.1;Parent=Phyra79395;constitutive=1;rank=1 scaffold_40 . repeat_region 69198 69206 . ? . description=dust scaffold_40 . repeat_region 78340 78352 . ? . description=dust scaffold_40 . repeat_region 82330 82349 . ? . description=trf scaffold_40 . biological_region 82436 82443 0.999 - . logic_name=eponine scaffold_40 . biological_region 85097 85100 0.999 - . logic_name=eponine scaffold_40 . repeat_region 86831 86900 . ? . description=trf scaffold_40 . repeat_region 86893 86922 . ? . description=trf scaffold_40 ensembl protein_coding_gene 82149 84389 . + . ID=Phyra79396;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000009;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 82149 84389 . + . ID=Phyra79396;Parent=Phyra79396;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 82149 84389 . + 0 ID=Phyra79396;Parent=Phyra79396;rank=1 scaffold_40 . exon 82149 84389 . + . ID=Phyra79396.1;Parent=Phyra79396;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 84984 85382 . + . ID=Phyra79397;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000010;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 84984 85382 . + . ID=Phyra79397;Parent=Phyra79397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 84984 85382 . + 0 ID=Phyra79397;Parent=Phyra79397;rank=1 scaffold_40 . exon 84984 85382 . + . ID=Phyra79397.1;Parent=Phyra79397;constitutive=1;rank=1 scaffold_40 . repeat_region 91414 91644 . ? . description=dust scaffold_40 . repeat_region 92775 92824 . ? . description=dust scaffold_40 ensembl protein_coding_gene 88310 90031 . - . ID=Phyra79398;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000011;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 88310 90031 . - . ID=Phyra79398;Parent=Phyra79398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 88310 90031 . - 0 ID=Phyra79398;Parent=Phyra79398;rank=1 scaffold_40 . exon 88310 90031 . - . ID=Phyra79398.1;Parent=Phyra79398;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 92555 94331 . + . ID=Phyra79399;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000012;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 92555 94331 . + . ID=Phyra79399;Parent=Phyra79399;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 92555 92684 . + 0 ID=Phyra79399;Parent=Phyra79399;rank=1 scaffold_40 . exon 92555 92684 . + . ID=Phyra79399.1;Parent=Phyra79399;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 92893 94331 . + 0 ID=Phyra79399;Parent=Phyra79399;rank=2 scaffold_40 . exon 92893 94331 . + . ID=Phyra79399.2;Parent=Phyra79399;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 ensembl protein_coding_gene 94809 96542 . - . ID=Phyra79400;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000013;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 94809 96542 . - . ID=Phyra79400;Parent=Phyra79400;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 94809 96542 . - 0 ID=Phyra79400;Parent=Phyra79400;rank=1 scaffold_40 . exon 94809 96542 . - . ID=Phyra79400.1;Parent=Phyra79400;constitutive=1;rank=1 scaffold_40 . biological_region 98725 98726 0.999 + . logic_name=eponine scaffold_40 . biological_region 99114 99118 0.999 + . logic_name=eponine scaffold_40 . biological_region 99219 99220 0.999 + . logic_name=eponine scaffold_40 . biological_region 101362 101363 0.999 + . logic_name=eponine scaffold_40 . biological_region 101751 101755 0.999 + . logic_name=eponine scaffold_40 . biological_region 101856 101857 0.999 + . logic_name=eponine scaffold_40 . biological_region 103295 103306 0.999 + . logic_name=eponine scaffold_40 . biological_region 103316 103318 0.999 + . logic_name=eponine scaffold_40 . biological_region 103337 103341 0.999 - . logic_name=eponine scaffold_40 . biological_region 103372 103378 0.999 + . logic_name=eponine scaffold_40 . biological_region 103375 103378 0.999 - . logic_name=eponine scaffold_40 . biological_region 104128 104130 0.999 + . logic_name=eponine scaffold_40 . biological_region 105936 105937 0.999 - . logic_name=eponine scaffold_40 . biological_region 106038 106042 0.999 - . logic_name=eponine scaffold_40 . biological_region 106451 106456 0.999 - . logic_name=eponine scaffold_40 . biological_region 106683 106684 0.999 + . logic_name=eponine scaffold_40 . repeat_region 106887 107326 . ? . description=trf scaffold_40 ensembl protein_coding_gene 98531 99859 . + . ID=Phyra79401;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000014;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 98531 99859 . + . ID=Phyra79401;Parent=Phyra79401;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 98531 99859 . + 0 ID=Phyra79401;Parent=Phyra79401;rank=1 scaffold_40 . exon 98531 99859 . + . ID=Phyra79401.1;Parent=Phyra79401;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 100763 102496 . + . ID=Phyra79402;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000015;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 100763 102496 . + . ID=Phyra79402;Parent=Phyra79402;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 100763 102496 . + 0 ID=Phyra79402;Parent=Phyra79402;rank=1 scaffold_40 . exon 100763 102496 . + . ID=Phyra79402.1;Parent=Phyra79402;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 102607 103485 . - . ID=Phyra79403;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000016;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 102607 103485 . - . ID=Phyra79403;Parent=Phyra79403;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 102607 103485 . - 0 ID=Phyra79403;Parent=Phyra79403;rank=1 scaffold_40 . exon 102607 103485 . - . ID=Phyra79403.1;Parent=Phyra79403;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 103666 105042 . - . ID=Phyra79404;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000017;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 103666 105042 . - . ID=Phyra79404;Parent=Phyra79404;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 103666 103754 . - 0 ID=Phyra79404;Parent=Phyra79404;rank=4 scaffold_40 . exon 103666 103754 . - . ID=Phyra79404.4;Parent=Phyra79404;constitutive=1;ensembl_phase=1;rank=4 scaffold_40 . CDS 103832 104531 . - 0 ID=Phyra79404;Parent=Phyra79404;rank=3 scaffold_40 . exon 103832 104531 . - . ID=Phyra79404.3;Parent=Phyra79404;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_40 . CDS 104600 104754 . - 0 ID=Phyra79404;Parent=Phyra79404;rank=2 scaffold_40 . exon 104600 104754 . - . ID=Phyra79404.2;Parent=Phyra79404;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 . CDS 104856 105042 . - 0 ID=Phyra79404;Parent=Phyra79404;rank=1 scaffold_40 . exon 104856 105042 . - . ID=Phyra79404.1;Parent=Phyra79404;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 ensembl protein_coding_gene 105296 107713 . - . ID=Phyra79405;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000018;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 105296 107713 . - . ID=Phyra79405;Parent=Phyra79405;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 105296 107713 . - 0 ID=Phyra79405;Parent=Phyra79405;rank=1 scaffold_40 . exon 105296 107713 . - . ID=Phyra79405.1;Parent=Phyra79405;constitutive=1;rank=1 scaffold_40 . repeat_region 116458 116507 . ? . description=dust scaffold_40 ensembl protein_coding_gene 111422 112087 . - . ID=Phyra79406;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000019;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 111422 112087 . - . ID=Phyra79406;Parent=Phyra79406;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 111422 112087 . - 0 ID=Phyra79406;Parent=Phyra79406;rank=1 scaffold_40 . exon 111422 112087 . - . ID=Phyra79406.1;Parent=Phyra79406;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 115122 115829 . - . ID=Phyra79407;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000020;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 115122 115829 . - . ID=Phyra79407;Parent=Phyra79407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 115122 115829 . - 0 ID=Phyra79407;Parent=Phyra79407;rank=1 scaffold_40 . exon 115122 115829 . - . ID=Phyra79407.1;Parent=Phyra79407;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 117214 117921 . + . ID=Phyra79408;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000021;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 117214 117921 . + . ID=Phyra79408;Parent=Phyra79408;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 117214 117921 . + 0 ID=Phyra79408;Parent=Phyra79408;rank=1 scaffold_40 . exon 117214 117921 . + . ID=Phyra79408.1;Parent=Phyra79408;constitutive=1;rank=1 scaffold_40 . biological_region 117729 117729 0.999 - . logic_name=eponine scaffold_40 . biological_region 121677 121677 0.999 + . logic_name=eponine scaffold_40 . biological_region 121694 121701 0.999 - . logic_name=eponine scaffold_40 . repeat_region 121895 121936 . ? . description=trf scaffold_40 ensembl protein_coding_gene 119355 121073 . - . ID=Phyra79409;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000022;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 119355 121073 . - . ID=Phyra79409;Parent=Phyra79409;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 119355 121073 . - 0 ID=Phyra79409;Parent=Phyra79409;rank=1 scaffold_40 . exon 119355 121073 . - . ID=Phyra79409.1;Parent=Phyra79409;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 121574 127849 . + . ID=Phyra79410;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000023;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 121574 127849 . + . ID=Phyra79410;Parent=Phyra79410;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 121574 127645 . + 0 ID=Phyra79410;Parent=Phyra79410;rank=1 scaffold_40 . exon 121574 127645 . + . ID=Phyra79410.1;Parent=Phyra79410;constitutive=1;rank=1 scaffold_40 . CDS 127721 127849 . + 0 ID=Phyra79410;Parent=Phyra79410;rank=2 scaffold_40 . exon 127721 127849 . + . ID=Phyra79410.2;Parent=Phyra79410;constitutive=1;rank=2 scaffold_40 ensembl protein_coding_gene 128105 129843 . - . ID=Phyra79411;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000024;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 128105 129843 . - . ID=Phyra79411;Parent=Phyra79411;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 128105 128792 . - 0 ID=Phyra79411;Parent=Phyra79411;rank=3 scaffold_40 . exon 128105 128792 . - . ID=Phyra79411.3;Parent=Phyra79411;constitutive=1;ensembl_phase=2;rank=3 scaffold_40 . CDS 128818 129700 . - 0 ID=Phyra79411;Parent=Phyra79411;rank=2 scaffold_40 . exon 128818 129700 . - . ID=Phyra79411.2;Parent=Phyra79411;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_40 . CDS 129735 129843 . - 0 ID=Phyra79411;Parent=Phyra79411;rank=1 scaffold_40 . exon 129735 129843 . - . ID=Phyra79411.1;Parent=Phyra79411;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 ensembl protein_coding_gene 130527 132263 . - . ID=Phyra79412;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000025;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 130527 132263 . - . ID=Phyra79412;Parent=Phyra79412;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 130527 132263 . - 0 ID=Phyra79412;Parent=Phyra79412;rank=1 scaffold_40 . exon 130527 132263 . - . ID=Phyra79412.1;Parent=Phyra79412;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 132805 134493 . - . ID=Phyra79413;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000026;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 132805 134493 . - . ID=Phyra79413;Parent=Phyra79413;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 132805 134493 . - 0 ID=Phyra79413;Parent=Phyra79413;rank=1 scaffold_40 . exon 132805 134493 . - . ID=Phyra79413.1;Parent=Phyra79413;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 135224 136904 . - . ID=Phyra79414;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000027;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 135224 136904 . - . ID=Phyra79414;Parent=Phyra79414;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 135224 136255 . - 0 ID=Phyra79414;Parent=Phyra79414;rank=2 scaffold_40 . exon 135224 136255 . - . ID=Phyra79414.2;Parent=Phyra79414;constitutive=1;rank=2 scaffold_40 . CDS 136290 136904 . - 0 ID=Phyra79414;Parent=Phyra79414;rank=1 scaffold_40 . exon 136290 136904 . - . ID=Phyra79414.1;Parent=Phyra79414;constitutive=1;rank=1 scaffold_40 . biological_region 138454 138456 0.999 + . logic_name=eponine scaffold_40 . biological_region 138554 138555 0.999 - . logic_name=eponine scaffold_40 . biological_region 141091 141095 0.999 - . logic_name=eponine scaffold_40 . biological_region 142151 142154 0.999 - . logic_name=eponine scaffold_40 . biological_region 143530 143533 0.999 - . logic_name=eponine scaffold_40 . biological_region 144404 144407 0.999 + . logic_name=eponine scaffold_40 . biological_region 145499 145503 0.999 - . logic_name=eponine scaffold_40 . biological_region 146106 146108 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 137419 139146 . - . ID=Phyra79415;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000028;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 137419 139146 . - . ID=Phyra79415;Parent=Phyra79415;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 137419 139146 . - 0 ID=Phyra79415;Parent=Phyra79415;rank=1 scaffold_40 . exon 137419 139146 . - . ID=Phyra79415.1;Parent=Phyra79415;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 140050 141783 . - . ID=Phyra79416;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000029;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 140050 141783 . - . ID=Phyra79416;Parent=Phyra79416;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 140050 141783 . - 0 ID=Phyra79416;Parent=Phyra79416;rank=1 scaffold_40 . exon 140050 141783 . - . ID=Phyra79416.1;Parent=Phyra79416;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 142396 144129 . - . ID=Phyra79417;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000030;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 142396 144129 . - . ID=Phyra79417;Parent=Phyra79417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 142396 144129 . - 0 ID=Phyra79417;Parent=Phyra79417;rank=1 scaffold_40 . exon 142396 144129 . - . ID=Phyra79417.1;Parent=Phyra79417;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 144971 146680 . - . ID=Phyra79418;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000031;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 144971 146680 . - . ID=Phyra79418;Parent=Phyra79418;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 144971 146680 . - 0 ID=Phyra79418;Parent=Phyra79418;rank=1 scaffold_40 . exon 144971 146680 . - . ID=Phyra79418.1;Parent=Phyra79418;constitutive=1;rank=1 scaffold_40 . repeat_region 148519 148548 . ? . description=trf scaffold_40 . repeat_region 148519 148548 . ? . description=dust scaffold_40 . repeat_region 154953 155002 . ? . description=dust scaffold_40 ensembl protein_coding_gene 149346 151040 . + . ID=Phyra79419;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000032;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 149346 151040 . + . ID=Phyra79419;Parent=Phyra79419;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 149346 151040 . + 0 ID=Phyra79419;Parent=Phyra79419;rank=1 scaffold_40 . exon 149346 151040 . + . ID=Phyra79419.1;Parent=Phyra79419;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 151355 153058 . - . ID=Phyra79420;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000033;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 151355 153058 . - . ID=Phyra79420;Parent=Phyra79420;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 151355 153058 . - 0 ID=Phyra79420;Parent=Phyra79420;rank=1 scaffold_40 . exon 151355 153058 . - . ID=Phyra79420.1;Parent=Phyra79420;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 154171 155343 . - . ID=Phyra79421;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000034;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 154171 155343 . - . ID=Phyra79421;Parent=Phyra79421;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 154171 154902 . - 0 ID=Phyra79421;Parent=Phyra79421;rank=2 scaffold_40 . exon 154171 154902 . - . ID=Phyra79421.2;Parent=Phyra79421;constitutive=1;rank=2 scaffold_40 . CDS 155056 155343 . - 0 ID=Phyra79421;Parent=Phyra79421;rank=1 scaffold_40 . exon 155056 155343 . - . ID=Phyra79421.1;Parent=Phyra79421;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 156125 157387 . - . ID=Phyra79422;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000035;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 156125 157387 . - . ID=Phyra79422;Parent=Phyra79422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 156125 157387 . - 0 ID=Phyra79422;Parent=Phyra79422;rank=1 scaffold_40 . exon 156125 157387 . - . ID=Phyra79422.1;Parent=Phyra79422;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 164714 165193 . + . ID=Phyra79423;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000036;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 164714 165193 . + . ID=Phyra79423;Parent=Phyra79423;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 164714 165193 . + 0 ID=Phyra79423;Parent=Phyra79423;rank=1 scaffold_40 . exon 164714 165193 . + . ID=Phyra79423.1;Parent=Phyra79423;constitutive=1;rank=1 scaffold_40 . repeat_region 172316 172327 . ? . description=dust scaffold_40 . biological_region 172572 172573 0.999 - . logic_name=eponine scaffold_40 . repeat_region 172835 172843 . ? . description=dust scaffold_40 . repeat_region 174203 174243 . ? . description=trf scaffold_40 . repeat_region 174471 174479 . ? . description=dust scaffold_40 . repeat_region 176785 176974 . + . description=Gypsy-1-I_PI-int scaffold_40 . repeat_region 179199 179500 . + . description=Gypsy-1-I_PI-int scaffold_40 ensembl protein_coding_gene 179120 180278 . + . ID=Phyra79424;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000037;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 179120 180278 . + . ID=Phyra79424;Parent=Phyra79424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 179120 179428 . + 0 ID=Phyra79424;Parent=Phyra79424;rank=1 scaffold_40 . exon 179120 179428 . + . ID=Phyra79424.1;Parent=Phyra79424;constitutive=1;rank=1 scaffold_40 . CDS 179671 179805 . + 0 ID=Phyra79424;Parent=Phyra79424;rank=2 scaffold_40 . exon 179671 179805 . + . ID=Phyra79424.2;Parent=Phyra79424;constitutive=1;rank=2 scaffold_40 . CDS 179889 180278 . + 0 ID=Phyra79424;Parent=Phyra79424;rank=3 scaffold_40 . exon 179889 180278 . + . ID=Phyra79424.3;Parent=Phyra79424;constitutive=1;rank=3 scaffold_40 ensembl protein_coding_gene 184475 186123 . + . ID=Phyra79425;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000038;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 184475 186123 . + . ID=Phyra79425;Parent=Phyra79425;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 184475 184745 . + 0 ID=Phyra79425;Parent=Phyra79425;rank=1 scaffold_40 . exon 184475 184745 . + . ID=Phyra79425.1;Parent=Phyra79425;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 184835 186123 . + 0 ID=Phyra79425;Parent=Phyra79425;rank=2 scaffold_40 . exon 184835 186123 . + . ID=Phyra79425.2;Parent=Phyra79425;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 . repeat_region 187687 187721 . ? . description=trf scaffold_40 . repeat_region 187713 187763 . ? . description=trf scaffold_40 . repeat_region 187843 187856 . ? . description=dust scaffold_40 . repeat_region 187950 187965 . ? . description=dust scaffold_40 . repeat_region 189586 189664 . ? . description=trf scaffold_40 . repeat_region 189980 189989 . ? . description=dust scaffold_40 . biological_region 195111 195112 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 188549 189213 . + . ID=Phyra79426;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000039;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 188549 189213 . + . ID=Phyra79426;Parent=Phyra79426;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 188549 188624 . + 0 ID=Phyra79426;Parent=Phyra79426;rank=1 scaffold_40 . exon 188549 188624 . + . ID=Phyra79426.1;Parent=Phyra79426;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 188704 188934 . + 0 ID=Phyra79426;Parent=Phyra79426;rank=2 scaffold_40 . exon 188704 188934 . + . ID=Phyra79426.2;Parent=Phyra79426;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_40 . CDS 189203 189213 . + 0 ID=Phyra79426;Parent=Phyra79426;rank=3 scaffold_40 . exon 189203 189213 . + . ID=Phyra79426.3;Parent=Phyra79426;constitutive=1;ensembl_phase=1;rank=3 scaffold_40 ensembl protein_coding_gene 195016 196002 . + . ID=Phyra79427;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000040;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 195016 196002 . + . ID=Phyra79427;Parent=Phyra79427;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 195016 196002 . + 0 ID=Phyra79427;Parent=Phyra79427;rank=1 scaffold_40 . exon 195016 196002 . + . ID=Phyra79427.1;Parent=Phyra79427;constitutive=1;rank=1 scaffold_40 ensembl snoRNA_gene 197776 197976 . - . ID=EPrPRAG00000000181;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_40 ensembl snoRNA 197776 197976 . - . ID=EPrPRAT00000000181;Parent=EPrPRAG00000000181;biotype=snoRNA;logic_name=ncrna_eg scaffold_40 . exon 197776 197976 . - . ID=EPrPRAE00000000181;Parent=EPrPRAT00000000181;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 196206 197078 . - . ID=Phyra79428;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000041;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 196206 197078 . - . ID=Phyra79428;Parent=Phyra79428;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 196206 197078 . - 0 ID=Phyra79428;Parent=Phyra79428;rank=1 scaffold_40 . exon 196206 197078 . - . ID=Phyra79428.1;Parent=Phyra79428;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 198373 200796 . - . ID=Phyra79429;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000042;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 198373 200796 . - . ID=Phyra79429;Parent=Phyra79429;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 198373 200796 . - 0 ID=Phyra79429;Parent=Phyra79429;rank=1 scaffold_40 . exon 198373 200796 . - . ID=Phyra79429.1;Parent=Phyra79429;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 201137 204643 . + . ID=Phyra79430;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000043;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 201137 204643 . + . ID=Phyra79430;Parent=Phyra79430;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 201137 204643 . + 0 ID=Phyra79430;Parent=Phyra79430;rank=1 scaffold_40 . exon 201137 204643 . + . ID=Phyra79430.1;Parent=Phyra79430;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 205106 206564 . + . ID=Phyra79431;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000044;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 205106 206564 . + . ID=Phyra79431;Parent=Phyra79431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 205106 205449 . + 0 ID=Phyra79431;Parent=Phyra79431;rank=1 scaffold_40 . exon 205106 205449 . + . ID=Phyra79431.1;Parent=Phyra79431;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . CDS 205536 205599 . + 0 ID=Phyra79431;Parent=Phyra79431;rank=2 scaffold_40 . exon 205536 205599 . + . ID=Phyra79431.2;Parent=Phyra79431;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 205980 206564 . + 0 ID=Phyra79431;Parent=Phyra79431;rank=3 scaffold_40 . biological_region 207897 207902 0.999 - . logic_name=eponine scaffold_40 . repeat_region 210070 210165 . ? . description=trf scaffold_40 . repeat_region 210604 210650 . ? . description=trf scaffold_40 . repeat_region 211082 211113 . ? . description=trf scaffold_40 . biological_region 213063 213064 0.999 + . logic_name=eponine scaffold_40 . biological_region 213105 213107 0.999 + . logic_name=eponine scaffold_40 . biological_region 213123 213125 0.999 - . logic_name=eponine scaffold_40 . biological_region 213777 213779 0.999 + . logic_name=eponine scaffold_40 . repeat_region 214403 214419 . ? . description=dust scaffold_40 . repeat_region 214633 214652 . ? . description=trf scaffold_40 . biological_region 215357 215361 0.999 - . logic_name=eponine scaffold_40 ensembl snoRNA_gene 209722 209946 . + . ID=EPrPRAG00000000111;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_40 ensembl snoRNA 209722 209946 . + . ID=EPrPRAT00000000111;Parent=EPrPRAG00000000111;biotype=snoRNA;logic_name=ncrna_eg scaffold_40 . exon 209722 209946 . + . ID=EPrPRAE00000000111;Parent=EPrPRAT00000000111;constitutive=1;rank=1 scaffold_40 . exon 205980 206564 . + . ID=Phyra79431.3;Parent=Phyra79431;constitutive=1;rank=3 scaffold_40 ensembl protein_coding_gene 210405 210932 . - . ID=Phyra79432;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000045;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 210405 210932 . - . ID=Phyra79432;Parent=Phyra79432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 210405 210932 . - 0 ID=Phyra79432;Parent=Phyra79432;rank=1 scaffold_40 . exon 210405 210932 . - . ID=Phyra79432.1;Parent=Phyra79432;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 212121 214361 . + . ID=Phyra79433;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000046;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 212121 214361 . + . ID=Phyra79433;Parent=Phyra79433;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 212121 214361 . + 0 ID=Phyra79433;Parent=Phyra79433;rank=1 scaffold_40 . exon 212121 214361 . + . ID=Phyra79433.1;Parent=Phyra79433;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 214788 215549 . + . ID=Phyra79434;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000047;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 214788 215549 . + . ID=Phyra79434;Parent=Phyra79434;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 214788 215549 . + 0 ID=Phyra79434;Parent=Phyra79434;rank=1 scaffold_40 . exon 214788 215549 . + . ID=Phyra79434.1;Parent=Phyra79434;constitutive=1;rank=1 scaffold_40 ensembl snoRNA_gene 220198 220398 . - . ID=EPrPRAG00000000155;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_40 ensembl snoRNA 220198 220398 . - . ID=EPrPRAT00000000155;Parent=EPrPRAG00000000155;biotype=snoRNA;logic_name=ncrna_eg scaffold_40 . exon 220198 220398 . - . ID=EPrPRAE00000000155;Parent=EPrPRAT00000000155;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 216372 217667 . + . ID=Phyra79435;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000048;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 216372 217667 . + . ID=Phyra79435;Parent=Phyra79435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 216372 217667 . + 0 ID=Phyra79435;Parent=Phyra79435;rank=1 scaffold_40 . exon 216372 217667 . + . ID=Phyra79435.1;Parent=Phyra79435;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 219237 219764 . + . ID=Phyra79436;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000049;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 219237 219764 . + . ID=Phyra79436;Parent=Phyra79436;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 219237 219764 . + 0 ID=Phyra79436;Parent=Phyra79436;rank=1 scaffold_40 . exon 219237 219764 . + . ID=Phyra79436.1;Parent=Phyra79436;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 220762 222699 . - . ID=Phyra79437;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000050;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 220762 222699 . - . ID=Phyra79437;Parent=Phyra79437;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 220762 222699 . - 0 ID=Phyra79437;Parent=Phyra79437;rank=1 scaffold_40 . exon 220762 222699 . - . ID=Phyra79437.1;Parent=Phyra79437;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 223217 223609 . - . ID=Phyra79438;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000051;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 223217 223609 . - . ID=Phyra79438;Parent=Phyra79438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 223217 223609 . - 0 ID=Phyra79438;Parent=Phyra79438;rank=1 scaffold_40 . exon 223217 223609 . - . ID=Phyra79438.1;Parent=Phyra79438;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 224499 227572 . - . ID=Phyra79439;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000052;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 224499 227572 . - . ID=Phyra79439;Parent=Phyra79439;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 224499 225915 . - 0 ID=Phyra79439;Parent=Phyra79439;rank=2 scaffold_40 . exon 224499 225915 . - . ID=Phyra79439.2;Parent=Phyra79439;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 226377 227572 . - 0 ID=Phyra79439;Parent=Phyra79439;rank=1 scaffold_40 . biological_region 225825 225826 0.999 + . logic_name=eponine scaffold_40 . biological_region 226935 226938 0.999 - . logic_name=eponine scaffold_40 . biological_region 227007 227007 0.999 - . logic_name=eponine scaffold_40 . repeat_region 228224 228257 . ? . description=trf scaffold_40 . repeat_region 228794 228844 . ? . description=trf scaffold_40 . repeat_region 228794 228844 . ? . description=dust scaffold_40 . biological_region 229907 229911 0.999 - . logic_name=eponine scaffold_40 . repeat_region 230536 230576 . ? . description=trf scaffold_40 . repeat_region 230536 230594 . ? . description=dust scaffold_40 . repeat_region 230542 230699 . ? . description=trf scaffold_40 . repeat_region 230554 230706 . ? . description=trf scaffold_40 . biological_region 230606 230611 0.999 - . logic_name=eponine scaffold_40 . repeat_region 232823 232951 . ? . description=trf scaffold_40 . repeat_region 232823 232951 . ? . description=trf scaffold_40 . repeat_region 233029 233405 . ? . description=trf scaffold_40 . repeat_region 233034 233141 . ? . description=trf scaffold_40 . repeat_region 233064 233273 . ? . description=trf scaffold_40 . repeat_region 233084 233760 . ? . description=trf scaffold_40 . repeat_region 233094 233578 . ? . description=trf scaffold_40 . repeat_region 233145 233223 . ? . description=trf scaffold_40 . repeat_region 233175 233677 . ? . description=trf scaffold_40 . repeat_region 233175 233811 . ? . description=trf scaffold_40 . repeat_region 233277 233342 . ? . description=trf scaffold_40 . repeat_region 233285 233354 . ? . description=trf scaffold_40 . repeat_region 233416 233588 . ? . description=trf scaffold_40 . repeat_region 233467 233537 . ? . description=trf scaffold_40 . repeat_region 233541 233813 . ? . description=trf scaffold_40 . repeat_region 233682 233812 . ? . description=trf scaffold_40 . biological_region 234565 234571 0.999 + . logic_name=eponine scaffold_40 . biological_region 234640 234642 0.999 + . logic_name=eponine scaffold_40 . biological_region 234656 234663 0.999 + . logic_name=eponine scaffold_40 . biological_region 234829 234834 0.999 - . logic_name=eponine scaffold_40 . biological_region 234885 234890 0.999 + . logic_name=eponine scaffold_40 . exon 226377 227572 . - . ID=Phyra79439.1;Parent=Phyra79439;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 ensembl protein_coding_gene 229786 231198 . + . ID=Phyra79440;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000053;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 229786 231198 . + . ID=Phyra79440;Parent=Phyra79440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 229786 231198 . + 0 ID=Phyra79440;Parent=Phyra79440;rank=1 scaffold_40 . exon 229786 231198 . + . ID=Phyra79440.1;Parent=Phyra79440;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 232254 234251 . + . ID=Phyra79441;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000054;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 232254 234251 . + . ID=Phyra79441;Parent=Phyra79441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 232254 234251 . + 0 ID=Phyra79441;Parent=Phyra79441;rank=1 scaffold_40 . exon 232254 234251 . + . ID=Phyra79441.1;Parent=Phyra79441;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 235246 236601 . + . ID=Phyra79442;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000055;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 235246 236601 . + . ID=Phyra79442;Parent=Phyra79442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 235246 236601 . + 0 ID=Phyra79442;Parent=Phyra79442;rank=1 scaffold_40 . exon 235246 236601 . + . ID=Phyra79442.1;Parent=Phyra79442;constitutive=1;rank=1 scaffold_40 ensembl snoRNA_gene 243865 244065 . - . ID=EPrPRAG00000000163;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_40 ensembl snoRNA 243865 244065 . - . ID=EPrPRAT00000000163;Parent=EPrPRAG00000000163;biotype=snoRNA;logic_name=ncrna_eg scaffold_40 . exon 243865 244065 . - . ID=EPrPRAE00000000163;Parent=EPrPRAT00000000163;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 237699 239481 . + . ID=Phyra79443;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000056;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 237699 239481 . + . ID=Phyra79443;Parent=Phyra79443;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 237699 239097 . + 0 ID=Phyra79443;Parent=Phyra79443;rank=1 scaffold_40 . exon 237699 239097 . + . ID=Phyra79443.1;Parent=Phyra79443;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 239159 239481 . + 0 ID=Phyra79443;Parent=Phyra79443;rank=2 scaffold_40 . exon 239159 239481 . + . ID=Phyra79443.2;Parent=Phyra79443;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 ensembl protein_coding_gene 240654 243962 . - . ID=Phyra79444;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000057;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 240654 243962 . - . ID=Phyra79444;Parent=Phyra79444;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 240654 243476 . - 0 ID=Phyra79444;Parent=Phyra79444;rank=2 scaffold_40 . exon 240654 243476 . - . ID=Phyra79444.2;Parent=Phyra79444;constitutive=1;rank=2 scaffold_40 . CDS 243879 243962 . - 0 ID=Phyra79444;Parent=Phyra79444;rank=1 scaffold_40 . exon 243879 243962 . - . ID=Phyra79444.1;Parent=Phyra79444;constitutive=1;rank=1 scaffold_40 . repeat_region 252335 252423 . ? . description=trf scaffold_40 . repeat_region 252775 252794 . ? . description=trf scaffold_40 . repeat_region 252857 252903 . ? . description=trf scaffold_40 . repeat_region 254149 254169 . ? . description=dust scaffold_40 ensembl snoRNA_gene 254717 254917 . - . ID=EPrPRAG00000000081;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_40 ensembl snoRNA 254717 254917 . - . ID=EPrPRAT00000000081;Parent=EPrPRAG00000000081;biotype=snoRNA;logic_name=ncrna_eg scaffold_40 ensembl snoRNA_gene 252048 252272 . + . ID=EPrPRAG00000000134;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_40 ensembl snoRNA 252048 252272 . + . ID=EPrPRAT00000000134;Parent=EPrPRAG00000000134;biotype=snoRNA;logic_name=ncrna_eg scaffold_40 . exon 254717 254917 . - . ID=EPrPRAE00000000081;Parent=EPrPRAT00000000081;constitutive=1;rank=1 scaffold_40 . exon 252048 252272 . + . ID=EPrPRAE00000000134;Parent=EPrPRAT00000000134;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 247124 248848 . + . ID=Phyra79445;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000058;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 247124 248848 . + . ID=Phyra79445;Parent=Phyra79445;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 247124 248848 . + 0 ID=Phyra79445;Parent=Phyra79445;rank=1 scaffold_40 . exon 247124 248848 . + . ID=Phyra79445.1;Parent=Phyra79445;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 249253 250010 . + . ID=Phyra79446;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000059;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 249253 250010 . + . ID=Phyra79446;Parent=Phyra79446;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 249253 249848 . + 0 ID=Phyra79446;Parent=Phyra79446;rank=1 scaffold_40 . exon 249253 249848 . + . ID=Phyra79446.1;Parent=Phyra79446;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . CDS 249983 250010 . + 0 ID=Phyra79446;Parent=Phyra79446;rank=2 scaffold_40 . exon 249983 250010 . + . ID=Phyra79446.2;Parent=Phyra79446;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 ensembl protein_coding_gene 252163 253129 . + . ID=Phyra79447;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000060;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 252163 253129 . + . ID=Phyra79447;Parent=Phyra79447;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 252163 252246 . + 0 ID=Phyra79447;Parent=Phyra79447;rank=1 scaffold_40 . exon 252163 252246 . + . ID=Phyra79447.1;Parent=Phyra79447;constitutive=1;rank=1 scaffold_40 . CDS 252650 253129 . + 0 ID=Phyra79447;Parent=Phyra79447;rank=2 scaffold_40 . exon 252650 253129 . + . ID=Phyra79447.2;Parent=Phyra79447;constitutive=1;rank=2 scaffold_40 . biological_region 256640 256641 0.999 - . logic_name=eponine scaffold_40 . biological_region 256961 256963 0.999 + . logic_name=eponine scaffold_40 . biological_region 256988 256991 0.999 + . logic_name=eponine scaffold_40 . biological_region 257023 257028 0.999 - . logic_name=eponine scaffold_40 . biological_region 259129 259130 0.999 - . logic_name=eponine scaffold_40 . biological_region 259210 259213 0.999 + . logic_name=eponine scaffold_40 . biological_region 259290 259291 0.999 - . logic_name=eponine scaffold_40 . biological_region 259328 259328 0.999 + . logic_name=eponine scaffold_40 . biological_region 263057 263060 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 257180 258322 . + . ID=Phyra71702;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_40000001;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 257180 258322 . + . ID=Phyra71702;Parent=Phyra71702;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 257180 258322 . + 0 ID=Phyra71702;Parent=Phyra71702;rank=1 scaffold_40 . exon 257180 258322 . + . ID=Phyra71702.1;Parent=Phyra71702;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 258623 259831 . - . ID=Phyra79449;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000062;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 258623 259831 . - . ID=Phyra79449;Parent=Phyra79449;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 258623 259831 . - 0 ID=Phyra79449;Parent=Phyra79449;rank=1 scaffold_40 . exon 258623 259831 . - . ID=Phyra79449.1;Parent=Phyra79449;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 262642 264142 . + . ID=Phyra79450;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000063;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 262642 264142 . + . ID=Phyra79450;Parent=Phyra79450;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 262642 262757 . + 0 ID=Phyra79450;Parent=Phyra79450;rank=1 scaffold_40 . exon 262642 262757 . + . ID=Phyra79450.1;Parent=Phyra79450;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . CDS 262909 264142 . + 0 ID=Phyra79450;Parent=Phyra79450;rank=2 scaffold_40 . exon 262909 264142 . + . ID=Phyra79450.2;Parent=Phyra79450;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 ensembl protein_coding_gene 264711 268362 . + . ID=Phyra79451;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000064;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 264711 268362 . + . ID=Phyra79451;Parent=Phyra79451;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 264711 265805 . + 0 ID=Phyra79451;Parent=Phyra79451;rank=1 scaffold_40 . exon 264711 265805 . + . ID=Phyra79451.1;Parent=Phyra79451;constitutive=1;rank=1 scaffold_40 . CDS 266035 266177 . + 0 ID=Phyra79451;Parent=Phyra79451;rank=2 scaffold_40 . CDS 266208 266833 . + 0 ID=Phyra79451;Parent=Phyra79451;rank=3 scaffold_40 . CDS 266899 266938 . + 0 ID=Phyra79451;Parent=Phyra79451;rank=4 scaffold_40 . CDS 267003 268362 . + 0 ID=Phyra79451;Parent=Phyra79451;rank=5 scaffold_40 ensembl protein_coding_gene 272993 274027 . - . ID=Phyra71703;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_40000002;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 272993 274027 . - . ID=Phyra71703;Parent=Phyra71703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 272993 274027 . - 0 ID=Phyra71703;Parent=Phyra71703;rank=1 scaffold_40 . exon 272993 274027 . - . ID=Phyra71703.1;Parent=Phyra71703;constitutive=1;rank=1 scaffold_40 . exon 266035 266177 . + . ID=Phyra79451.2;Parent=Phyra79451;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_40 . exon 266208 266833 . + . ID=Phyra79451.3;Parent=Phyra79451;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_40 . exon 266899 266938 . + . ID=Phyra79451.4;Parent=Phyra79451;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_40 . exon 267003 268362 . + . ID=Phyra79451.5;Parent=Phyra79451;constitutive=1;ensembl_phase=2;rank=5 scaffold_40 ensembl protein_coding_gene 268433 270688 . - . ID=Phyra79452;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000065;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 268433 270688 . - . ID=Phyra79452;Parent=Phyra79452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 268433 270688 . - 0 ID=Phyra79452;Parent=Phyra79452;rank=1 scaffold_40 . exon 268433 270688 . - . ID=Phyra79452.1;Parent=Phyra79452;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 271376 272798 . + . ID=Phyra79453;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000066;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 271376 272798 . + . ID=Phyra79453;Parent=Phyra79453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 271376 271477 . + 0 ID=Phyra79453;Parent=Phyra79453;rank=1 scaffold_40 . exon 271376 271477 . + . ID=Phyra79453.1;Parent=Phyra79453;constitutive=1;rank=1 scaffold_40 . CDS 271560 272798 . + 0 ID=Phyra79453;Parent=Phyra79453;rank=2 scaffold_40 . exon 271560 272798 . + . ID=Phyra79453.2;Parent=Phyra79453;constitutive=1;rank=2 scaffold_40 . repeat_region 281051 281062 . ? . description=dust scaffold_40 . repeat_region 281901 281919 . ? . description=dust scaffold_40 . repeat_region 282890 282897 . ? . description=dust scaffold_40 . repeat_region 283029 283037 . ? . description=dust scaffold_40 . repeat_region 283745 283796 . ? . description=trf scaffold_40 ensembl snoRNA_gene 274721 274945 . + . ID=EPrPRAG00000000068;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_40 ensembl snoRNA 274721 274945 . + . ID=EPrPRAT00000000068;Parent=EPrPRAG00000000068;biotype=snoRNA;logic_name=ncrna_eg scaffold_40 . exon 274721 274945 . + . ID=EPrPRAE00000000068;Parent=EPrPRAT00000000068;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 279053 279442 . + . ID=Phyra79455;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000068;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 279053 279442 . + . ID=Phyra79455;Parent=Phyra79455;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 279053 279442 . + 0 ID=Phyra79455;Parent=Phyra79455;rank=1 scaffold_40 . exon 279053 279442 . + . ID=Phyra79455.1;Parent=Phyra79455;constitutive=1;rank=1 scaffold_40 . biological_region 292230 292234 0.999 + . logic_name=eponine scaffold_40 . biological_region 292618 292626 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 290528 290947 . + . ID=Phyra79456;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000069;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 290528 290947 . + . ID=Phyra79456;Parent=Phyra79456;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 290528 290947 . + 0 ID=Phyra79456;Parent=Phyra79456;rank=1 scaffold_40 . exon 290528 290947 . + . ID=Phyra79456.1;Parent=Phyra79456;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 291677 292687 . + . ID=Phyra79457;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000070;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 291677 292687 . + . ID=Phyra79457;Parent=Phyra79457;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 291677 292687 . + 0 ID=Phyra79457;Parent=Phyra79457;rank=1 scaffold_40 . exon 291677 292687 . + . ID=Phyra79457.1;Parent=Phyra79457;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 292998 294435 . - . ID=Phyra79458;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000071;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 292998 294435 . - . ID=Phyra79458;Parent=Phyra79458;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 292998 293039 . - 0 ID=Phyra79458;Parent=Phyra79458;rank=6 scaffold_40 . exon 292998 293039 . - . ID=Phyra79458.6;Parent=Phyra79458;constitutive=1;rank=6 scaffold_40 . CDS 293123 293203 . - 0 ID=Phyra79458;Parent=Phyra79458;rank=5 scaffold_40 . exon 293123 293203 . - . ID=Phyra79458.5;Parent=Phyra79458;constitutive=1;rank=5 scaffold_40 . CDS 293228 293454 . - 0 ID=Phyra79458;Parent=Phyra79458;rank=4 scaffold_40 . exon 293228 293454 . - . ID=Phyra79458.4;Parent=Phyra79458;constitutive=1;ensembl_phase=1;rank=4 scaffold_40 . CDS 293615 293711 . - 0 ID=Phyra79458;Parent=Phyra79458;rank=3 scaffold_40 . exon 293615 293711 . - . ID=Phyra79458.3;Parent=Phyra79458;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_40 . CDS 293782 294136 . - 0 ID=Phyra79458;Parent=Phyra79458;rank=2 scaffold_40 . exon 293782 294136 . - . ID=Phyra79458.2;Parent=Phyra79458;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 294332 294435 . - 0 ID=Phyra79458;Parent=Phyra79458;rank=1 scaffold_40 . repeat_region 300888 305184 . ? . description=dust scaffold_40 . exon 294332 294435 . - . ID=Phyra79458.1;Parent=Phyra79458;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . biological_region 305321 305329 0.999 + . logic_name=eponine scaffold_40 . biological_region 305546 305546 0.999 - . logic_name=eponine scaffold_40 . biological_region 309953 309958 0.999 + . logic_name=eponine scaffold_40 . biological_region 310046 310051 0.999 - . logic_name=eponine scaffold_40 . biological_region 310911 310912 0.999 + . logic_name=eponine scaffold_40 . biological_region 310952 310958 0.999 + . logic_name=eponine scaffold_40 . biological_region 311185 311189 0.999 + . logic_name=eponine scaffold_40 . biological_region 311354 311355 0.999 - . logic_name=eponine scaffold_40 . biological_region 311403 311409 0.999 - . logic_name=eponine scaffold_40 . biological_region 312896 312898 0.999 + . logic_name=eponine scaffold_40 ensembl protein_coding_gene 309426 311633 . + . ID=Phyra79459;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000072;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 309426 311633 . + . ID=Phyra79459;Parent=Phyra79459;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 309426 309689 . + 0 ID=Phyra79459;Parent=Phyra79459;rank=1 scaffold_40 . exon 309426 309689 . + . ID=Phyra79459.1;Parent=Phyra79459;constitutive=1;rank=1 scaffold_40 . CDS 309724 310100 . + 0 ID=Phyra79459;Parent=Phyra79459;rank=2 scaffold_40 . exon 309724 310100 . + . ID=Phyra79459.2;Parent=Phyra79459;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_40 . CDS 310202 310777 . + 0 ID=Phyra79459;Parent=Phyra79459;rank=3 scaffold_40 . exon 310202 310777 . + . ID=Phyra79459.3;Parent=Phyra79459;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_40 . CDS 310988 311633 . + 0 ID=Phyra79459;Parent=Phyra79459;rank=4 scaffold_40 . exon 310988 311633 . + . ID=Phyra79459.4;Parent=Phyra79459;constitutive=1;ensembl_phase=2;rank=4 scaffold_40 ensembl protein_coding_gene 312275 315571 . + . ID=Phyra79460;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000073;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 312275 315571 . + . ID=Phyra79460;Parent=Phyra79460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 312275 312434 . + 0 ID=Phyra79460;Parent=Phyra79460;rank=1 scaffold_40 . exon 312275 312434 . + . ID=Phyra79460.1;Parent=Phyra79460;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 312774 315571 . + 0 ID=Phyra79460;Parent=Phyra79460;rank=2 scaffold_40 . exon 312774 315571 . + . ID=Phyra79460.2;Parent=Phyra79460;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 . repeat_region 321506 321555 . ? . description=dust scaffold_40 . repeat_region 323567 327016 . ? . description=dust scaffold_40 ensembl protein_coding_gene 317927 321278 . - . ID=Phyra79461;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000074;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 317927 321278 . - . ID=Phyra79461;Parent=Phyra79461;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 317927 318723 . - 0 ID=Phyra79461;Parent=Phyra79461;rank=4 scaffold_40 . exon 317927 318723 . - . ID=Phyra79461.4;Parent=Phyra79461;constitutive=1;ensembl_phase=1;rank=4 scaffold_40 . CDS 318919 320049 . - 0 ID=Phyra79461;Parent=Phyra79461;rank=3 scaffold_40 . exon 318919 320049 . - . ID=Phyra79461.3;Parent=Phyra79461;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_40 . CDS 320117 321116 . - 0 ID=Phyra79461;Parent=Phyra79461;rank=2 scaffold_40 . exon 320117 321116 . - . ID=Phyra79461.2;Parent=Phyra79461;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_40 . CDS 321207 321278 . - 0 ID=Phyra79461;Parent=Phyra79461;rank=1 scaffold_40 . exon 321207 321278 . - . ID=Phyra79461.1;Parent=Phyra79461;constitutive=1;rank=1 scaffold_40 . biological_region 342957 342958 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 333522 333980 . + . ID=Phyra79462;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000075;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 333522 333980 . + . ID=Phyra79462;Parent=Phyra79462;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 333522 333980 . + 0 ID=Phyra79462;Parent=Phyra79462;rank=1 scaffold_40 . exon 333522 333980 . + . ID=Phyra79462.1;Parent=Phyra79462;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 342988 344512 . - . ID=Phyra79463;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000076;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 342988 344512 . - . ID=Phyra79463;Parent=Phyra79463;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 342988 343533 . - 0 ID=Phyra79463;Parent=Phyra79463;rank=3 scaffold_40 . exon 342988 343533 . - . ID=Phyra79463.3;Parent=Phyra79463;constitutive=1;rank=3 scaffold_40 . CDS 344069 344382 . - 0 ID=Phyra79463;Parent=Phyra79463;rank=2 scaffold_40 . CDS 344404 344512 . - 0 ID=Phyra79463;Parent=Phyra79463;rank=1 scaffold_40 . repeat_region 344600 344649 . ? . description=dust scaffold_40 . repeat_region 345540 345797 . ? . description=dust scaffold_40 . repeat_region 346541 346555 . ? . description=dust scaffold_40 . repeat_region 350954 350976 . ? . description=trf scaffold_40 ensembl protein_coding_gene 351203 352462 . + . ID=Phyra71704;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_40000003;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 351203 352462 . + . ID=Phyra71704;Parent=Phyra71704;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 351203 352462 . + 0 ID=Phyra71704;Parent=Phyra71704;rank=1 scaffold_40 . exon 351203 352462 . + . ID=Phyra71704.1;Parent=Phyra71704;constitutive=1;rank=1 scaffold_40 . exon 344069 344382 . - . ID=Phyra79463.2;Parent=Phyra79463;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 . exon 344404 344512 . - . ID=Phyra79463.1;Parent=Phyra79463;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 ensembl protein_coding_gene 347786 351055 . + . ID=Phyra79464;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000077;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 347786 351055 . + . ID=Phyra79464;Parent=Phyra79464;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 347786 347984 . + 0 ID=Phyra79464;Parent=Phyra79464;rank=1 scaffold_40 . exon 347786 347984 . + . ID=Phyra79464.1;Parent=Phyra79464;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 348036 348859 . + 0 ID=Phyra79464;Parent=Phyra79464;rank=2 scaffold_40 . exon 348036 348859 . + . ID=Phyra79464.2;Parent=Phyra79464;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 . CDS 349511 350259 . + 0 ID=Phyra79464;Parent=Phyra79464;rank=3 scaffold_40 . exon 349511 350259 . + . ID=Phyra79464.3;Parent=Phyra79464;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_40 . CDS 350295 350855 . + 0 ID=Phyra79464;Parent=Phyra79464;rank=4 scaffold_40 . exon 350295 350855 . + . ID=Phyra79464.4;Parent=Phyra79464;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_40 . CDS 350885 351055 . + 0 ID=Phyra79464;Parent=Phyra79464;rank=5 scaffold_40 . exon 350885 351055 . + . ID=Phyra79464.5;Parent=Phyra79464;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_40 . biological_region 361177 361178 0.999 + . logic_name=eponine scaffold_40 . biological_region 362278 362284 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 361064 361808 . + . ID=Phyra79466;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000079;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 361064 361808 . + . ID=Phyra79466;Parent=Phyra79466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 361064 361406 . + 0 ID=Phyra79466;Parent=Phyra79466;rank=1 scaffold_40 . exon 361064 361406 . + . ID=Phyra79466.1;Parent=Phyra79466;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 361653 361677 . + 0 ID=Phyra79466;Parent=Phyra79466;rank=2 scaffold_40 . exon 361653 361677 . + . ID=Phyra79466.2;Parent=Phyra79466;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_40 . CDS 361715 361808 . + 0 ID=Phyra79466;Parent=Phyra79466;rank=3 scaffold_40 . exon 361715 361808 . + . ID=Phyra79466.3;Parent=Phyra79466;constitutive=1;ensembl_phase=2;rank=3 scaffold_40 ensembl protein_coding_gene 362792 368304 . + . ID=Phyra79467;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000080;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 362792 368304 . + . ID=Phyra79467;Parent=Phyra79467;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 362792 364588 . + 0 ID=Phyra79467;Parent=Phyra79467;rank=1 scaffold_40 . exon 362792 364588 . + . ID=Phyra79467.1;Parent=Phyra79467;constitutive=1;rank=1 scaffold_40 . CDS 364760 365026 . + 0 ID=Phyra79467;Parent=Phyra79467;rank=2 scaffold_40 . CDS 365144 365635 . + 0 ID=Phyra79467;Parent=Phyra79467;rank=3 scaffold_40 . CDS 366223 366303 . + 0 ID=Phyra79467;Parent=Phyra79467;rank=4 scaffold_40 . CDS 366331 366625 . + 0 ID=Phyra79467;Parent=Phyra79467;rank=5 scaffold_40 . CDS 366838 367916 . + 0 ID=Phyra79467;Parent=Phyra79467;rank=6 scaffold_40 . CDS 368266 368304 . + 0 ID=Phyra79467;Parent=Phyra79467;rank=7 scaffold_40 . repeat_region 367938 367950 . ? . description=dust scaffold_40 . repeat_region 368134 368160 . ? . description=trf scaffold_40 . repeat_region 368138 368160 . ? . description=dust scaffold_40 . repeat_region 371785 371823 . ? . description=dust scaffold_40 . repeat_region 372054 392012 . ? . description=dust scaffold_40 . exon 364760 365026 . + . ID=Phyra79467.2;Parent=Phyra79467;constitutive=1;rank=2 scaffold_40 . exon 365144 365635 . + . ID=Phyra79467.3;Parent=Phyra79467;constitutive=1;rank=3 scaffold_40 . exon 366223 366303 . + . ID=Phyra79467.4;Parent=Phyra79467;constitutive=1;rank=4 scaffold_40 . exon 366331 366625 . + . ID=Phyra79467.5;Parent=Phyra79467;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_40 . exon 366838 367916 . + . ID=Phyra79467.6;Parent=Phyra79467;constitutive=1;ensembl_phase=1;rank=6 scaffold_40 . exon 368266 368304 . + . ID=Phyra79467.7;Parent=Phyra79467;constitutive=1;rank=7 scaffold_40 . repeat_region 372054 392012 . ? . description=dust scaffold_40 ensembl protein_coding_gene 399829 400803 . + . ID=Phyra79468;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000081;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 399829 400803 . + . ID=Phyra79468;Parent=Phyra79468;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 399829 400803 . + 0 ID=Phyra79468;Parent=Phyra79468;rank=1 scaffold_40 . exon 399829 400803 . + . ID=Phyra79468.1;Parent=Phyra79468;constitutive=1;rank=1 scaffold_40 . repeat_region 408148 429123 . ? . description=dust scaffold_40 ensembl protein_coding_gene 405815 406204 . - . ID=Phyra79469;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_40000082;logic_name=jgi_phyra1 scaffold_40 ensembl transcript 405815 406204 . - . ID=Phyra79469;Parent=Phyra79469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_40 . CDS 405815 406204 . - 0 ID=Phyra79469;Parent=Phyra79469;rank=1 scaffold_40 . exon 405815 406204 . - . ID=Phyra79469.1;Parent=Phyra79469;constitutive=1;rank=1 scaffold_40 . repeat_region 408148 429123 . ? . description=dust scaffold_40 . biological_region 431259 431263 0.999 - . logic_name=eponine scaffold_40 . biological_region 431263 431265 0.999 + . logic_name=eponine scaffold_40 . biological_region 431314 431316 0.999 + . logic_name=eponine scaffold_40 . biological_region 431353 431354 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_39 1 432226 scaffold_39 . repeat_region 188 228 . ? . description=trf scaffold_39 . repeat_region 707 744 . ? . description=trf scaffold_39 . repeat_region 725 875 . ? . description=trf scaffold_39 . repeat_region 2671 2685 . ? . description=dust scaffold_39 ensembl protein_coding_gene 166 1023 . - . ID=Phyra79303;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000001;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 166 1023 . - . ID=Phyra79303;Parent=Phyra79303;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 166 360 . - 0 ID=Phyra79303;Parent=Phyra79303;rank=3 scaffold_39 . exon 166 360 . - . ID=Phyra79303.3;Parent=Phyra79303;constitutive=1;rank=3 scaffold_39 . CDS 402 408 . - 0 ID=Phyra79303;Parent=Phyra79303;rank=2 scaffold_39 . exon 402 408 . - . ID=Phyra79303.2;Parent=Phyra79303;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 503 1023 . - 0 ID=Phyra79303;Parent=Phyra79303;rank=1 scaffold_39 . exon 503 1023 . - . ID=Phyra79303.1;Parent=Phyra79303;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 ensembl protein_coding_gene 7944 9125 . - . ID=Phyra79304;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000002;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 7944 9125 . - . ID=Phyra79304;Parent=Phyra79304;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 7944 9125 . - 0 ID=Phyra79304;Parent=Phyra79304;rank=1 scaffold_39 . exon 7944 9125 . - . ID=Phyra79304.1;Parent=Phyra79304;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 9878 11368 . + . ID=Phyra79305;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000003;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 9878 11368 . + . ID=Phyra79305;Parent=Phyra79305;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 9878 11368 . + 0 ID=Phyra79305;Parent=Phyra79305;rank=1 scaffold_39 . exon 9878 11368 . + . ID=Phyra79305.1;Parent=Phyra79305;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 14993 16147 . - . ID=Phyra79306;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000004;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 14993 16147 . - . ID=Phyra79306;Parent=Phyra79306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 14993 16147 . - 0 ID=Phyra79306;Parent=Phyra79306;rank=1 scaffold_39 . exon 14993 16147 . - . ID=Phyra79306.1;Parent=Phyra79306;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 18356 19639 . - . ID=Phyra79307;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000005;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 18356 19639 . - . ID=Phyra79307;Parent=Phyra79307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 18356 18477 . - 0 ID=Phyra79307;Parent=Phyra79307;rank=4 scaffold_39 . exon 18356 18477 . - . ID=Phyra79307.4;Parent=Phyra79307;constitutive=1;ensembl_phase=1;rank=4 scaffold_39 . CDS 18568 19150 . - 0 ID=Phyra79307;Parent=Phyra79307;rank=3 scaffold_39 . exon 18568 19150 . - . ID=Phyra79307.3;Parent=Phyra79307;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_39 . CDS 19309 19465 . - 0 ID=Phyra79307;Parent=Phyra79307;rank=2 scaffold_39 . exon 19309 19465 . - . ID=Phyra79307.2;Parent=Phyra79307;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 19605 19639 . - 0 ID=Phyra79307;Parent=Phyra79307;rank=1 scaffold_39 . exon 19605 19639 . - . ID=Phyra79307.1;Parent=Phyra79307;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . repeat_region 22730 22738 . ? . description=dust scaffold_39 . repeat_region 23502 23551 . ? . description=dust scaffold_39 . repeat_region 23798 23841 . ? . description=trf scaffold_39 . repeat_region 24553 27601 . ? . description=dust scaffold_39 ensembl protein_coding_gene 20243 20821 . - . ID=Phyra79308;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000006;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 20243 20821 . - . ID=Phyra79308;Parent=Phyra79308;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 20243 20821 . - 0 ID=Phyra79308;Parent=Phyra79308;rank=1 scaffold_39 . exon 20243 20821 . - . ID=Phyra79308.1;Parent=Phyra79308;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 28007 28657 . - . ID=Phyra79309;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000007;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 28007 28657 . - . ID=Phyra79309;Parent=Phyra79309;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 28007 28657 . - 0 ID=Phyra79309;Parent=Phyra79309;rank=1 scaffold_39 . exon 28007 28657 . - . ID=Phyra79309.1;Parent=Phyra79309;constitutive=1;rank=1 scaffold_39 . biological_region 33086 33087 0.999 + . logic_name=eponine scaffold_39 . biological_region 38788 38792 0.999 - . logic_name=eponine scaffold_39 ensembl protein_coding_gene 30345 32021 . + . ID=Phyra79310;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000008;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 30345 32021 . + . ID=Phyra79310;Parent=Phyra79310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 30345 32021 . + 0 ID=Phyra79310;Parent=Phyra79310;rank=1 scaffold_39 . exon 30345 32021 . + . ID=Phyra79310.1;Parent=Phyra79310;constitutive=1;rank=1 scaffold_39 . repeat_region 39339 39349 . ? . description=dust scaffold_39 . repeat_region 39715 39727 . ? . description=dust scaffold_39 . repeat_region 41222 41238 . ? . description=dust scaffold_39 . repeat_region 44453 44460 . ? . description=dust scaffold_39 . repeat_region 45051 45069 . ? . description=dust scaffold_39 . repeat_region 55669 55857 . ? . description=trf scaffold_39 ensembl protein_coding_gene 52037 52375 . - . ID=Phyra71697;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_39000001;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 52037 52375 . - . ID=Phyra71697;Parent=Phyra71697;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 52037 52375 . - 0 ID=Phyra71697;Parent=Phyra71697;rank=1 scaffold_39 . exon 52037 52375 . - . ID=Phyra71697.1;Parent=Phyra71697;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 50321 50982 . + . ID=Phyra79311;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000009;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 50321 50982 . + . ID=Phyra79311;Parent=Phyra79311;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 50321 50727 . + 0 ID=Phyra79311;Parent=Phyra79311;rank=1 scaffold_39 . exon 50321 50727 . + . ID=Phyra79311.1;Parent=Phyra79311;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . CDS 50800 50896 . + 0 ID=Phyra79311;Parent=Phyra79311;rank=2 scaffold_39 . exon 50800 50896 . + . ID=Phyra79311.2;Parent=Phyra79311;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 50944 50982 . + 0 ID=Phyra79311;Parent=Phyra79311;rank=3 scaffold_39 . exon 50944 50982 . + . ID=Phyra79311.3;Parent=Phyra79311;constitutive=1;rank=3 scaffold_39 ensembl protein_coding_gene 56545 57582 . - . ID=Phyra79313;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000011;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 56545 57582 . - . ID=Phyra79313;Parent=Phyra79313;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 56545 57582 . - 0 ID=Phyra79313;Parent=Phyra79313;rank=1 scaffold_39 . exon 56545 57582 . - . ID=Phyra79313.1;Parent=Phyra79313;constitutive=1;rank=1 scaffold_39 . biological_region 59447 59450 0.999 + . logic_name=eponine scaffold_39 . repeat_region 61933 61940 . ? . description=dust scaffold_39 . repeat_region 64777 64835 . ? . description=dust scaffold_39 . biological_region 66139 66144 0.999 + . logic_name=eponine scaffold_39 . biological_region 68612 68613 0.999 + . logic_name=eponine scaffold_39 ensembl protein_coding_gene 59381 60992 . + . ID=Phyra79314;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000012;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 59381 60992 . + . ID=Phyra79314;Parent=Phyra79314;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 59381 60862 . + 0 ID=Phyra79314;Parent=Phyra79314;rank=1 scaffold_39 . exon 59381 60862 . + . ID=Phyra79314.1;Parent=Phyra79314;constitutive=1;rank=1 scaffold_39 . CDS 60957 60992 . + 0 ID=Phyra79314;Parent=Phyra79314;rank=2 scaffold_39 . exon 60957 60992 . + . ID=Phyra79314.2;Parent=Phyra79314;constitutive=1;rank=2 scaffold_39 ensembl protein_coding_gene 66547 67227 . - . ID=Phyra79315;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000013;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 66547 67227 . - . ID=Phyra79315;Parent=Phyra79315;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 66547 67227 . - 0 ID=Phyra79315;Parent=Phyra79315;rank=1 scaffold_39 . exon 66547 67227 . - . ID=Phyra79315.1;Parent=Phyra79315;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 73770 75300 . + . ID=Phyra79316;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000014;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 73770 75300 . + . ID=Phyra79316;Parent=Phyra79316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 73770 73791 . + 0 ID=Phyra79316;Parent=Phyra79316;rank=1 scaffold_39 . exon 73770 73791 . + . ID=Phyra79316.1;Parent=Phyra79316;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 74182 74191 . + 0 ID=Phyra79316;Parent=Phyra79316;rank=2 scaffold_39 . exon 74182 74191 . + . ID=Phyra79316.2;Parent=Phyra79316;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_39 . CDS 74264 74380 . + 0 ID=Phyra79316;Parent=Phyra79316;rank=3 scaffold_39 . exon 74264 74380 . + . ID=Phyra79316.3;Parent=Phyra79316;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_39 . CDS 74452 74671 . + 0 ID=Phyra79316;Parent=Phyra79316;rank=4 scaffold_39 . exon 74452 74671 . + . ID=Phyra79316.4;Parent=Phyra79316;constitutive=1;ensembl_phase=2;rank=4 scaffold_39 . CDS 75013 75300 . + 0 ID=Phyra79316;Parent=Phyra79316;rank=5 scaffold_39 . exon 75013 75300 . + . ID=Phyra79316.5;Parent=Phyra79316;constitutive=1;rank=5 scaffold_39 ensembl protein_coding_gene 75839 77626 . - . ID=Phyra79317;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000015;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 75839 77626 . - . ID=Phyra79317;Parent=Phyra79317;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 75839 77626 . - 0 ID=Phyra79317;Parent=Phyra79317;rank=1 scaffold_39 . exon 75839 77626 . - . ID=Phyra79317.1;Parent=Phyra79317;constitutive=1;rank=1 scaffold_39 . biological_region 79823 79827 0.999 - . logic_name=eponine scaffold_39 . biological_region 80014 80018 0.999 + . logic_name=eponine scaffold_39 . repeat_region 80873 80888 . ? . description=dust scaffold_39 . repeat_region 87425 87474 . ? . description=dust scaffold_39 . repeat_region 88323 88330 . ? . description=dust scaffold_39 ensembl protein_coding_gene 78983 80228 . - . ID=Phyra79318;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000016;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 78983 80228 . - . ID=Phyra79318;Parent=Phyra79318;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 78983 79313 . - 0 ID=Phyra79318;Parent=Phyra79318;rank=4 scaffold_39 . exon 78983 79313 . - . ID=Phyra79318.4;Parent=Phyra79318;constitutive=1;ensembl_phase=2;rank=4 scaffold_39 . CDS 79383 79445 . - 0 ID=Phyra79318;Parent=Phyra79318;rank=3 scaffold_39 . exon 79383 79445 . - . ID=Phyra79318.3;Parent=Phyra79318;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_39 . CDS 79517 79580 . - 0 ID=Phyra79318;Parent=Phyra79318;rank=2 scaffold_39 . exon 79517 79580 . - . ID=Phyra79318.2;Parent=Phyra79318;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_39 . CDS 79658 80228 . - 0 ID=Phyra79318;Parent=Phyra79318;rank=1 scaffold_39 . exon 79658 80228 . - . ID=Phyra79318.1;Parent=Phyra79318;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 ensembl protein_coding_gene 84768 85655 . + . ID=Phyra79319;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000017;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 84768 85655 . + . ID=Phyra79319;Parent=Phyra79319;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 84768 85655 . + 0 ID=Phyra79319;Parent=Phyra79319;rank=1 scaffold_39 . exon 84768 85655 . + . ID=Phyra79319.1;Parent=Phyra79319;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 92208 93095 . + . ID=Phyra79320;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000018;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 92208 93095 . + . ID=Phyra79320;Parent=Phyra79320;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 92208 93095 . + 0 ID=Phyra79320;Parent=Phyra79320;rank=1 scaffold_39 . exon 92208 93095 . + . ID=Phyra79320.1;Parent=Phyra79320;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 97863 100190 . - . ID=Phyra79321;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000019;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 97863 100190 . - . ID=Phyra79321;Parent=Phyra79321;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 97863 100190 . - 0 ID=Phyra79321;Parent=Phyra79321;rank=1 scaffold_39 . exon 97863 100190 . - . ID=Phyra79321.1;Parent=Phyra79321;constitutive=1;rank=1 scaffold_39 . biological_region 98725 98731 0.999 - . logic_name=eponine scaffold_39 ensembl protein_coding_gene 105921 107347 . + . ID=Phyra79322;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000020;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 105921 107347 . + . ID=Phyra79322;Parent=Phyra79322;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 105921 106068 . + 0 ID=Phyra79322;Parent=Phyra79322;rank=1 scaffold_39 . exon 105921 106068 . + . ID=Phyra79322.1;Parent=Phyra79322;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 106117 106227 . + 0 ID=Phyra79322;Parent=Phyra79322;rank=2 scaffold_39 . exon 106117 106227 . + . ID=Phyra79322.2;Parent=Phyra79322;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 106393 107116 . + 0 ID=Phyra79322;Parent=Phyra79322;rank=3 scaffold_39 . exon 106393 107116 . + . ID=Phyra79322.3;Parent=Phyra79322;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_39 . CDS 107314 107347 . + 0 ID=Phyra79322;Parent=Phyra79322;rank=4 scaffold_39 . exon 107314 107347 . + . ID=Phyra79322.4;Parent=Phyra79322;constitutive=1;ensembl_phase=2;rank=4 scaffold_39 . repeat_region 115069 115088 . ? . description=trf scaffold_39 ensembl protein_coding_gene 114323 115913 . + . ID=Phyra79323;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000021;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 114323 115913 . + . ID=Phyra79323;Parent=Phyra79323;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 114323 114438 . + 0 ID=Phyra79323;Parent=Phyra79323;rank=1 scaffold_39 . exon 114323 114438 . + . ID=Phyra79323.1;Parent=Phyra79323;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . CDS 114505 115433 . + 0 ID=Phyra79323;Parent=Phyra79323;rank=2 scaffold_39 . exon 114505 115433 . + . ID=Phyra79323.2;Parent=Phyra79323;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 115510 115913 . + 0 ID=Phyra79323;Parent=Phyra79323;rank=3 scaffold_39 . exon 115510 115913 . + . ID=Phyra79323.3;Parent=Phyra79323;constitutive=1;ensembl_phase=1;rank=3 scaffold_39 . repeat_region 119762 119770 . ? . description=dust scaffold_39 . biological_region 128953 128954 0.999 + . logic_name=eponine scaffold_39 . biological_region 129164 129166 0.999 + . logic_name=eponine scaffold_39 . biological_region 129174 129176 0.999 - . logic_name=eponine scaffold_39 . biological_region 129223 129227 0.999 - . logic_name=eponine scaffold_39 . biological_region 129228 129232 0.999 + . logic_name=eponine scaffold_39 . biological_region 129419 129422 0.999 + . logic_name=eponine scaffold_39 ensembl protein_coding_gene 128924 135355 . + . ID=Phyra79324;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000022;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 128924 135355 . + . ID=Phyra79324;Parent=Phyra79324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 128924 130224 . + 0 ID=Phyra79324;Parent=Phyra79324;rank=1 scaffold_39 . exon 128924 130224 . + . ID=Phyra79324.1;Parent=Phyra79324;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . CDS 131179 132422 . + 0 ID=Phyra79324;Parent=Phyra79324;rank=2 scaffold_39 . exon 131179 132422 . + . ID=Phyra79324.2;Parent=Phyra79324;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 132660 134686 . + 0 ID=Phyra79324;Parent=Phyra79324;rank=3 scaffold_39 . exon 132660 134686 . + . ID=Phyra79324.3;Parent=Phyra79324;constitutive=1;ensembl_phase=1;rank=3 scaffold_39 . CDS 134801 135106 . + 0 ID=Phyra79324;Parent=Phyra79324;rank=4 scaffold_39 . exon 134801 135106 . + . ID=Phyra79324.4;Parent=Phyra79324;constitutive=1;rank=4 scaffold_39 . CDS 135191 135355 . + 0 ID=Phyra79324;Parent=Phyra79324;rank=5 scaffold_39 . exon 135191 135355 . + . ID=Phyra79324.5;Parent=Phyra79324;constitutive=1;rank=5 scaffold_39 ensembl protein_coding_gene 136138 137349 . - . ID=Phyra79325;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000023;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 136138 137349 . - . ID=Phyra79325;Parent=Phyra79325;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 136138 136181 . - 0 ID=Phyra79325;Parent=Phyra79325;rank=3 scaffold_39 . exon 136138 136181 . - . ID=Phyra79325.3;Parent=Phyra79325;constitutive=1;ensembl_phase=1;rank=3 scaffold_39 . CDS 136353 136982 . - 0 ID=Phyra79325;Parent=Phyra79325;rank=2 scaffold_39 . exon 136353 136982 . - . ID=Phyra79325.2;Parent=Phyra79325;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 137040 137349 . - 0 ID=Phyra79325;Parent=Phyra79325;rank=1 scaffold_39 . exon 137040 137349 . - . ID=Phyra79325.1;Parent=Phyra79325;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . repeat_region 140530 140538 . ? . description=dust scaffold_39 . repeat_region 141150 141207 . ? . description=dust scaffold_39 . repeat_region 141643 141727 . ? . description=trf scaffold_39 . repeat_region 141743 141824 . ? . description=trf scaffold_39 . repeat_region 141757 141835 . ? . description=trf scaffold_39 . repeat_region 144130 144138 . ? . description=dust scaffold_39 . repeat_region 146340 146389 . ? . description=dust scaffold_39 ensembl protein_coding_gene 141138 143360 . + . ID=Phyra79326;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000024;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 141138 143360 . + . ID=Phyra79326;Parent=Phyra79326;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 141138 143360 . + 0 ID=Phyra79326;Parent=Phyra79326;rank=1 scaffold_39 . exon 141138 143360 . + . ID=Phyra79326.1;Parent=Phyra79326;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 144793 146539 . + . ID=Phyra79327;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000025;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 144793 146539 . + . ID=Phyra79327;Parent=Phyra79327;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 144793 146305 . + 0 ID=Phyra79327;Parent=Phyra79327;rank=1 scaffold_39 . exon 144793 146305 . + . ID=Phyra79327.1;Parent=Phyra79327;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 146508 146539 . + 0 ID=Phyra79327;Parent=Phyra79327;rank=2 scaffold_39 . exon 146508 146539 . + . ID=Phyra79327.2;Parent=Phyra79327;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 . repeat_region 147570 160736 . ? . description=dust scaffold_39 . repeat_region 160962 160976 . ? . description=dust scaffold_39 . repeat_region 161184 161197 . ? . description=dust scaffold_39 . biological_region 171172 171177 0.999 + . logic_name=eponine scaffold_39 ensembl protein_coding_gene 178754 179944 . - . ID=Phyra79328;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000026;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 178754 179944 . - . ID=Phyra79328;Parent=Phyra79328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 178754 179944 . - 0 ID=Phyra79328;Parent=Phyra79328;rank=1 scaffold_39 . exon 178754 179944 . - . ID=Phyra79328.1;Parent=Phyra79328;constitutive=1;rank=1 scaffold_39 . biological_region 199526 199528 0.999 - . logic_name=eponine scaffold_39 . repeat_region 201907 201915 . ? . description=dust scaffold_39 ensembl protein_coding_gene 201973 202461 . - . ID=Phyra79329;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000027;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 201973 202461 . - . ID=Phyra79329;Parent=Phyra79329;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 201973 202461 . - 0 ID=Phyra79329;Parent=Phyra79329;rank=1 scaffold_39 . exon 201973 202461 . - . ID=Phyra79329.1;Parent=Phyra79329;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 206158 207180 . - . ID=Phyra79330;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000028;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 206158 207180 . - . ID=Phyra79330;Parent=Phyra79330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 206158 207180 . - 0 ID=Phyra79330;Parent=Phyra79330;rank=1 scaffold_39 . exon 206158 207180 . - . ID=Phyra79330.1;Parent=Phyra79330;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 215754 216509 . - . ID=Phyra79331;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000029;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 215754 216509 . - . ID=Phyra79331;Parent=Phyra79331;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 215754 216327 . - 0 ID=Phyra79331;Parent=Phyra79331;rank=2 scaffold_39 . exon 215754 216327 . - . ID=Phyra79331.2;Parent=Phyra79331;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 216463 216509 . - 0 ID=Phyra79331;Parent=Phyra79331;rank=1 scaffold_39 . repeat_region 221341 221351 . ? . description=dust scaffold_39 . biological_region 222193 222194 0.999 + . logic_name=eponine scaffold_39 . repeat_region 224316 224323 . ? . description=dust scaffold_39 . biological_region 225217 225220 0.999 + . logic_name=eponine scaffold_39 . exon 216463 216509 . - . ID=Phyra79331.1;Parent=Phyra79331;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 ensembl protein_coding_gene 219433 221082 . - . ID=Phyra79332;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000030;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 219433 221082 . - . ID=Phyra79332;Parent=Phyra79332;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 219433 221082 . - 0 ID=Phyra79332;Parent=Phyra79332;rank=1 scaffold_39 . exon 219433 221082 . - . ID=Phyra79332.1;Parent=Phyra79332;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 221649 222795 . + . ID=Phyra79333;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000031;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 221649 222795 . + . ID=Phyra79333;Parent=Phyra79333;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 221649 221658 . + 0 ID=Phyra79333;Parent=Phyra79333;rank=1 scaffold_39 . exon 221649 221658 . + . ID=Phyra79333.1;Parent=Phyra79333;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 221745 222235 . + 0 ID=Phyra79333;Parent=Phyra79333;rank=2 scaffold_39 . exon 221745 222235 . + . ID=Phyra79333.2;Parent=Phyra79333;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 222306 222582 . + 0 ID=Phyra79333;Parent=Phyra79333;rank=3 scaffold_39 . exon 222306 222582 . + . ID=Phyra79333.3;Parent=Phyra79333;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_39 . CDS 222644 222795 . + 0 ID=Phyra79333;Parent=Phyra79333;rank=4 scaffold_39 . exon 222644 222795 . + . ID=Phyra79333.4;Parent=Phyra79333;constitutive=1;ensembl_phase=1;rank=4 scaffold_39 ensembl protein_coding_gene 225396 226219 . + . ID=Phyra79334;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000032;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 225396 226219 . + . ID=Phyra79334;Parent=Phyra79334;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 225396 225650 . + 0 ID=Phyra79334;Parent=Phyra79334;rank=1 scaffold_39 . exon 225396 225650 . + . ID=Phyra79334.1;Parent=Phyra79334;constitutive=1;rank=1 scaffold_39 . CDS 225723 225915 . + 0 ID=Phyra79334;Parent=Phyra79334;rank=2 scaffold_39 . exon 225723 225915 . + . ID=Phyra79334.2;Parent=Phyra79334;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_39 . CDS 225948 226219 . + 0 ID=Phyra79334;Parent=Phyra79334;rank=3 scaffold_39 . exon 225948 226219 . + . ID=Phyra79334.3;Parent=Phyra79334;constitutive=1;ensembl_phase=1;rank=3 scaffold_39 ensembl pseudogene 226250 226493 . + . ID=Phyra48261;biotype=pseudogene;external_name=gwEuk.39.2.1;logic_name=jgi_phyra1 scaffold_39 ensembl pseudogene 226250 226493 . + . ID=Phyra48261;Parent=Phyra48261;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_39 . exon 226250 226358 . + . ID=Phyra48261.1;Parent=Phyra48261;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . exon 226420 226493 . + . ID=Phyra48261.2;Parent=Phyra48261;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 ensembl protein_coding_gene 226734 233334 . + . ID=Phyra79335;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000033;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 226734 233334 . + . ID=Phyra79335;Parent=Phyra79335;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 226734 231962 . + 0 ID=Phyra79335;Parent=Phyra79335;rank=1 scaffold_39 . exon 226734 231962 . + . ID=Phyra79335.1;Parent=Phyra79335;constitutive=1;rank=1 scaffold_39 . CDS 232223 232517 . + 0 ID=Phyra79335;Parent=Phyra79335;rank=2 scaffold_39 . exon 232223 232517 . + . ID=Phyra79335.2;Parent=Phyra79335;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_39 . CDS 232827 232922 . + 0 ID=Phyra79335;Parent=Phyra79335;rank=3 scaffold_39 . exon 232827 232922 . + . ID=Phyra79335.3;Parent=Phyra79335;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_39 . CDS 233141 233334 . + 0 ID=Phyra79335;Parent=Phyra79335;rank=4 scaffold_39 . exon 233141 233334 . + . ID=Phyra79335.4;Parent=Phyra79335;constitutive=1;ensembl_phase=1;rank=4 scaffold_39 . repeat_region 236895 236935 . ? . description=trf scaffold_39 . biological_region 244141 244144 0.999 + . logic_name=eponine scaffold_39 . biological_region 245144 245145 0.999 + . logic_name=eponine scaffold_39 . biological_region 245273 245275 0.999 - . logic_name=eponine scaffold_39 . biological_region 245315 245319 0.999 + . logic_name=eponine scaffold_39 ensembl protein_coding_gene 236069 237350 . - . ID=Phyra79336;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000034;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 236069 237350 . - . ID=Phyra79336;Parent=Phyra79336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 236069 236344 . - 0 ID=Phyra79336;Parent=Phyra79336;rank=4 scaffold_39 . exon 236069 236344 . - . ID=Phyra79336.4;Parent=Phyra79336;constitutive=1;rank=4 scaffold_39 . CDS 236430 236722 . - 0 ID=Phyra79336;Parent=Phyra79336;rank=3 scaffold_39 . exon 236430 236722 . - . ID=Phyra79336.3;Parent=Phyra79336;constitutive=1;ensembl_phase=1;rank=3 scaffold_39 . CDS 236776 237093 . - 0 ID=Phyra79336;Parent=Phyra79336;rank=2 scaffold_39 . exon 236776 237093 . - . ID=Phyra79336.2;Parent=Phyra79336;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 237170 237350 . - 0 ID=Phyra79336;Parent=Phyra79336;rank=1 scaffold_39 . exon 237170 237350 . - . ID=Phyra79336.1;Parent=Phyra79336;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 ensembl protein_coding_gene 238787 239745 . + . ID=Phyra79337;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000035;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 238787 239745 . + . ID=Phyra79337;Parent=Phyra79337;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 238787 239073 . + 0 ID=Phyra79337;Parent=Phyra79337;rank=1 scaffold_39 . exon 238787 239073 . + . ID=Phyra79337.1;Parent=Phyra79337;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . CDS 239204 239387 . + 0 ID=Phyra79337;Parent=Phyra79337;rank=2 scaffold_39 . exon 239204 239387 . + . ID=Phyra79337.2;Parent=Phyra79337;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 239447 239644 . + 0 ID=Phyra79337;Parent=Phyra79337;rank=3 scaffold_39 . exon 239447 239644 . + . ID=Phyra79337.3;Parent=Phyra79337;constitutive=1;rank=3 scaffold_39 . CDS 239713 239745 . + 0 ID=Phyra79337;Parent=Phyra79337;rank=4 scaffold_39 . exon 239713 239745 . + . ID=Phyra79337.4;Parent=Phyra79337;constitutive=1;rank=4 scaffold_39 ensembl protein_coding_gene 244015 245551 . - . ID=Phyra79338;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000036;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 244015 245551 . - . ID=Phyra79338;Parent=Phyra79338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 244015 244031 . - 0 ID=Phyra79338;Parent=Phyra79338;rank=4 scaffold_39 . exon 244015 244031 . - . ID=Phyra79338.4;Parent=Phyra79338;constitutive=1;ensembl_phase=1;rank=4 scaffold_39 . CDS 244106 245033 . - 0 ID=Phyra79338;Parent=Phyra79338;rank=3 scaffold_39 . exon 244106 245033 . - . ID=Phyra79338.3;Parent=Phyra79338;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_39 . CDS 245143 245430 . - 0 ID=Phyra79338;Parent=Phyra79338;rank=2 scaffold_39 . exon 245143 245430 . - . ID=Phyra79338.2;Parent=Phyra79338;constitutive=1;rank=2 scaffold_39 . CDS 245498 245551 . - 0 ID=Phyra79338;Parent=Phyra79338;rank=1 scaffold_39 . exon 245498 245551 . - . ID=Phyra79338.1;Parent=Phyra79338;constitutive=1;rank=1 scaffold_39 . repeat_region 249522 249536 . ? . description=dust scaffold_39 . repeat_region 249618 249635 . ? . description=dust scaffold_39 . repeat_region 250214 250221 . ? . description=dust scaffold_39 . repeat_region 253184 253191 . ? . description=dust scaffold_39 ensembl protein_coding_gene 245847 248633 . + . ID=Phyra79339;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000037;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 245847 248633 . + . ID=Phyra79339;Parent=Phyra79339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 245847 248633 . + 0 ID=Phyra79339;Parent=Phyra79339;rank=1 scaffold_39 . exon 245847 248633 . + . ID=Phyra79339.1;Parent=Phyra79339;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 250996 253107 . + . ID=Phyra79340;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000038;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 250996 253107 . + . ID=Phyra79340;Parent=Phyra79340;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 250996 253107 . + 0 ID=Phyra79340;Parent=Phyra79340;rank=1 scaffold_39 . exon 250996 253107 . + . ID=Phyra79340.1;Parent=Phyra79340;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 253255 253980 . - . ID=Phyra79341;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000039;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 253255 253980 . - . ID=Phyra79341;Parent=Phyra79341;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 253255 253391 . - 0 ID=Phyra79341;Parent=Phyra79341;rank=4 scaffold_39 . exon 253255 253391 . - . ID=Phyra79341.4;Parent=Phyra79341;constitutive=1;ensembl_phase=1;rank=4 scaffold_39 . CDS 253453 253554 . - 0 ID=Phyra79341;Parent=Phyra79341;rank=3 scaffold_39 . exon 253453 253554 . - . ID=Phyra79341.3;Parent=Phyra79341;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_39 . CDS 253777 253900 . - 0 ID=Phyra79341;Parent=Phyra79341;rank=2 scaffold_39 . exon 253777 253900 . - . ID=Phyra79341.2;Parent=Phyra79341;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_39 . CDS 253942 253980 . - 0 ID=Phyra79341;Parent=Phyra79341;rank=1 scaffold_39 . exon 253942 253980 . - . ID=Phyra79341.1;Parent=Phyra79341;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 254235 255836 . - . ID=Phyra79342;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000040;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 254235 255836 . - . ID=Phyra79342;Parent=Phyra79342;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 254235 255836 . - 0 ID=Phyra79342;Parent=Phyra79342;rank=1 scaffold_39 . exon 254235 255836 . - . ID=Phyra79342.1;Parent=Phyra79342;constitutive=1;rank=1 scaffold_39 . biological_region 263333 263335 0.999 + . logic_name=eponine scaffold_39 . biological_region 263402 263404 0.999 - . logic_name=eponine scaffold_39 ensembl protein_coding_gene 257238 258866 . + . ID=Phyra79343;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000041;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 257238 258866 . + . ID=Phyra79343;Parent=Phyra79343;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 257238 257940 . + 0 ID=Phyra79343;Parent=Phyra79343;rank=1 scaffold_39 . exon 257238 257940 . + . ID=Phyra79343.1;Parent=Phyra79343;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 257983 258866 . + 0 ID=Phyra79343;Parent=Phyra79343;rank=2 scaffold_39 . exon 257983 258866 . + . ID=Phyra79343.2;Parent=Phyra79343;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 ensembl protein_coding_gene 259565 261661 . + . ID=Phyra79344;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000042;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 259565 261661 . + . ID=Phyra79344;Parent=Phyra79344;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 259565 261661 . + 0 ID=Phyra79344;Parent=Phyra79344;rank=1 scaffold_39 . exon 259565 261661 . + . ID=Phyra79344.1;Parent=Phyra79344;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 262136 263623 . + . ID=Phyra79345;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000043;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 262136 263623 . + . ID=Phyra79345;Parent=Phyra79345;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 262136 263623 . + 0 ID=Phyra79345;Parent=Phyra79345;rank=1 scaffold_39 . exon 262136 263623 . + . ID=Phyra79345.1;Parent=Phyra79345;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 264894 266600 . + . ID=Phyra79346;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000044;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 264894 266600 . + . ID=Phyra79346;Parent=Phyra79346;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 264894 266600 . + 0 ID=Phyra79346;Parent=Phyra79346;rank=1 scaffold_39 . exon 264894 266600 . + . ID=Phyra79346.1;Parent=Phyra79346;constitutive=1;rank=1 scaffold_39 . repeat_region 266902 266915 . ? . description=dust scaffold_39 ensembl protein_coding_gene 266982 267923 . - . ID=Phyra79347;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000045;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 266982 267923 . - . ID=Phyra79347;Parent=Phyra79347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 266982 267830 . - 0 ID=Phyra79347;Parent=Phyra79347;rank=2 scaffold_39 . exon 266982 267830 . - . ID=Phyra79347.2;Parent=Phyra79347;constitutive=1;rank=2 scaffold_39 . CDS 267912 267923 . - 0 ID=Phyra79347;Parent=Phyra79347;rank=1 scaffold_39 . exon 267912 267923 . - . ID=Phyra79347.1;Parent=Phyra79347;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 268289 272393 . + . ID=Phyra79348;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000046;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 268289 272393 . + . ID=Phyra79348;Parent=Phyra79348;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 268289 269356 . + 0 ID=Phyra79348;Parent=Phyra79348;rank=1 scaffold_39 . exon 268289 269356 . + . ID=Phyra79348.1;Parent=Phyra79348;constitutive=1;rank=1 scaffold_39 . CDS 269421 269844 . + 0 ID=Phyra79348;Parent=Phyra79348;rank=2 scaffold_39 . exon 269421 269844 . + . ID=Phyra79348.2;Parent=Phyra79348;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_39 . CDS 270163 272393 . + 0 ID=Phyra79348;Parent=Phyra79348;rank=3 scaffold_39 . exon 270163 272393 . + . ID=Phyra79348.3;Parent=Phyra79348;constitutive=1;ensembl_phase=1;rank=3 scaffold_39 ensembl protein_coding_gene 273350 275439 . - . ID=Phyra79349;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000047;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 273350 275439 . - . ID=Phyra79349;Parent=Phyra79349;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 273350 274404 . - 0 ID=Phyra79349;Parent=Phyra79349;rank=2 scaffold_39 . exon 273350 274404 . - . ID=Phyra79349.2;Parent=Phyra79349;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 274557 275439 . - 0 ID=Phyra79349;Parent=Phyra79349;rank=1 scaffold_39 . exon 274557 275439 . - . ID=Phyra79349.1;Parent=Phyra79349;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . repeat_region 278708 278745 . ? . description=trf scaffold_39 . biological_region 282031 282034 0.999 + . logic_name=eponine scaffold_39 ensembl protein_coding_gene 277713 278797 . + . ID=Phyra79350;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000048;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 277713 278797 . + . ID=Phyra79350;Parent=Phyra79350;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 277713 277941 . + 0 ID=Phyra79350;Parent=Phyra79350;rank=1 scaffold_39 . exon 277713 277941 . + . ID=Phyra79350.1;Parent=Phyra79350;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 278202 278345 . + 0 ID=Phyra79350;Parent=Phyra79350;rank=2 scaffold_39 . exon 278202 278345 . + . ID=Phyra79350.2;Parent=Phyra79350;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 278418 278797 . + 0 ID=Phyra79350;Parent=Phyra79350;rank=3 scaffold_39 . exon 278418 278797 . + . ID=Phyra79350.3;Parent=Phyra79350;constitutive=1;ensembl_phase=1;rank=3 scaffold_39 ensembl protein_coding_gene 278834 279919 . - . ID=Phyra79351;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000049;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 278834 279919 . - . ID=Phyra79351;Parent=Phyra79351;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 278834 279919 . - 0 ID=Phyra79351;Parent=Phyra79351;rank=1 scaffold_39 . exon 278834 279919 . - . ID=Phyra79351.1;Parent=Phyra79351;constitutive=1;rank=1 scaffold_39 . repeat_region 293177 293186 . ? . description=dust scaffold_39 ensembl protein_coding_gene 285840 287033 . - . ID=Phyra79352;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000050;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 285840 287033 . - . ID=Phyra79352;Parent=Phyra79352;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 285840 287033 . - 0 ID=Phyra79352;Parent=Phyra79352;rank=1 scaffold_39 . exon 285840 287033 . - . ID=Phyra79352.1;Parent=Phyra79352;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 287247 290297 . - . ID=Phyra79353;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000051;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 287247 290297 . - . ID=Phyra79353;Parent=Phyra79353;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 287247 290297 . - 0 ID=Phyra79353;Parent=Phyra79353;rank=1 scaffold_39 . exon 287247 290297 . - . ID=Phyra79353.1;Parent=Phyra79353;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 292026 292901 . + . ID=Phyra79354;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000052;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 292026 292901 . + . ID=Phyra79354;Parent=Phyra79354;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 292026 292901 . + 0 ID=Phyra79354;Parent=Phyra79354;rank=1 scaffold_39 . exon 292026 292901 . + . ID=Phyra79354.1;Parent=Phyra79354;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 293219 295829 . + . ID=Phyra79355;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000053;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 293219 295829 . + . ID=Phyra79355;Parent=Phyra79355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 293219 293977 . + 0 ID=Phyra79355;Parent=Phyra79355;rank=1 scaffold_39 . exon 293219 293977 . + . ID=Phyra79355.1;Parent=Phyra79355;constitutive=1;rank=1 scaffold_39 . CDS 294215 294289 . + 0 ID=Phyra79355;Parent=Phyra79355;rank=2 scaffold_39 . exon 294215 294289 . + . ID=Phyra79355.2;Parent=Phyra79355;constitutive=1;rank=2 scaffold_39 . CDS 294357 295829 . + 0 ID=Phyra79355;Parent=Phyra79355;rank=3 scaffold_39 . exon 294357 295829 . + . ID=Phyra79355.3;Parent=Phyra79355;constitutive=1;rank=3 scaffold_39 . biological_region 295438 295441 0.999 - . logic_name=eponine scaffold_39 . biological_region 295516 295519 0.999 + . logic_name=eponine scaffold_39 ensembl protein_coding_gene 298829 300395 . - . ID=Phyra71698;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_39000002;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 298829 300395 . - . ID=Phyra71698;Parent=Phyra71698;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 298829 298872 . - 0 ID=Phyra71698;Parent=Phyra71698;rank=2 scaffold_39 . exon 298829 298872 . - . ID=Phyra71698.2;Parent=Phyra71698;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 298904 300395 . - 0 ID=Phyra71698;Parent=Phyra71698;rank=1 scaffold_39 . exon 298904 300395 . - . ID=Phyra71698.1;Parent=Phyra71698;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 ensembl protein_coding_gene 301867 303630 . - . ID=Phyra79357;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000055;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 301867 303630 . - . ID=Phyra79357;Parent=Phyra79357;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 301867 303630 . - 0 ID=Phyra79357;Parent=Phyra79357;rank=1 scaffold_39 . exon 301867 303630 . - . ID=Phyra79357.1;Parent=Phyra79357;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 308685 310367 . - . ID=Phyra71699;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_39000003;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 308685 310367 . - . ID=Phyra71699;Parent=Phyra71699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 308685 310367 . - 0 ID=Phyra71699;Parent=Phyra71699;rank=1 scaffold_39 . exon 308685 310367 . - . ID=Phyra71699.1;Parent=Phyra71699;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 305631 307862 . - . ID=Phyra79358;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000056;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 305631 307862 . - . ID=Phyra79358;Parent=Phyra79358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 305631 307862 . - 0 ID=Phyra79358;Parent=Phyra79358;rank=1 scaffold_39 . exon 305631 307862 . - . ID=Phyra79358.1;Parent=Phyra79358;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 310633 311389 . - . ID=Phyra79360;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000058;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 310633 311389 . - . ID=Phyra79360;Parent=Phyra79360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 310633 310682 . - 0 ID=Phyra79360;Parent=Phyra79360;rank=3 scaffold_39 . exon 310633 310682 . - . ID=Phyra79360.3;Parent=Phyra79360;constitutive=1;ensembl_phase=1;rank=3 scaffold_39 . CDS 310751 311085 . - 0 ID=Phyra79360;Parent=Phyra79360;rank=2 scaffold_39 . exon 310751 311085 . - . ID=Phyra79360.2;Parent=Phyra79360;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 311163 311389 . - 0 ID=Phyra79360;Parent=Phyra79360;rank=1 scaffold_39 . exon 311163 311389 . - . ID=Phyra79360.1;Parent=Phyra79360;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 ensembl protein_coding_gene 312884 313192 . - . ID=Phyra79361;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000059;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 312884 313192 . - . ID=Phyra79361;Parent=Phyra79361;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 312884 313192 . - 0 ID=Phyra79361;Parent=Phyra79361;rank=1 scaffold_39 . exon 312884 313192 . - . ID=Phyra79361.1;Parent=Phyra79361;constitutive=1;rank=1 scaffold_39 . biological_region 315698 315699 0.999 - . logic_name=eponine scaffold_39 . biological_region 317690 317692 0.999 + . logic_name=eponine scaffold_39 . biological_region 317781 317782 0.999 - . logic_name=eponine scaffold_39 . biological_region 317804 317805 0.999 + . logic_name=eponine scaffold_39 . repeat_region 318925 318949 . ? . description=trf scaffold_39 . biological_region 320945 320948 0.999 - . logic_name=eponine scaffold_39 . repeat_region 323213 323238 . ? . description=trf scaffold_39 ensembl protein_coding_gene 319575 321230 . - . ID=Phyra48300;biotype=protein_coding;external_name=gwEuk.39.41.1;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 319575 321230 . - . ID=Phyra48300;Parent=Phyra48300;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 319575 321230 . - 0 ID=Phyra48300;Parent=Phyra48300;rank=1 scaffold_39 . exon 319575 321230 . - . ID=Phyra48300.1;Parent=Phyra48300;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 315607 319386 . + . ID=Phyra79362;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000060;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 315607 319386 . + . ID=Phyra79362;Parent=Phyra79362;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 315607 317984 . + 0 ID=Phyra79362;Parent=Phyra79362;rank=1 scaffold_39 . exon 315607 317984 . + . ID=Phyra79362.1;Parent=Phyra79362;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . CDS 318077 318083 . + 0 ID=Phyra79362;Parent=Phyra79362;rank=2 scaffold_39 . exon 318077 318083 . + . ID=Phyra79362.2;Parent=Phyra79362;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 318193 318768 . + 0 ID=Phyra79362;Parent=Phyra79362;rank=3 scaffold_39 . exon 318193 318768 . + . ID=Phyra79362.3;Parent=Phyra79362;constitutive=1;rank=3 scaffold_39 . CDS 318841 319386 . + 0 ID=Phyra79362;Parent=Phyra79362;rank=4 scaffold_39 . exon 318841 319386 . + . ID=Phyra79362.4;Parent=Phyra79362;constitutive=1;rank=4 scaffold_39 ensembl protein_coding_gene 322926 325847 . + . ID=Phyra79364;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000062;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 322926 325847 . + . ID=Phyra79364;Parent=Phyra79364;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 322926 324881 . + 0 ID=Phyra79364;Parent=Phyra79364;rank=1 scaffold_39 . exon 322926 324881 . + . ID=Phyra79364.1;Parent=Phyra79364;constitutive=1;rank=1 scaffold_39 . CDS 324971 325087 . + 0 ID=Phyra79364;Parent=Phyra79364;rank=2 scaffold_39 . CDS 325158 325847 . + 0 ID=Phyra79364;Parent=Phyra79364;rank=3 scaffold_39 . repeat_region 328658 328665 . ? . description=dust scaffold_39 ensembl protein_coding_gene 329035 335582 . - . ID=Phyra48310;biotype=protein_coding;external_name=gwEuk.39.51.1;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 329035 335582 . - . ID=Phyra48310;Parent=Phyra48310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 329035 329129 . - 0 ID=Phyra48310;Parent=Phyra48310;rank=2 scaffold_39 . exon 329035 329129 . - . ID=Phyra48310.2;Parent=Phyra48310;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 333086 335582 . - 0 ID=Phyra48310;Parent=Phyra48310;rank=1 scaffold_39 . exon 333086 335582 . - . ID=Phyra48310.1;Parent=Phyra48310;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . exon 324971 325087 . + . ID=Phyra79364.2;Parent=Phyra79364;constitutive=1;rank=2 scaffold_39 . exon 325158 325847 . + . ID=Phyra79364.3;Parent=Phyra79364;constitutive=1;rank=3 scaffold_39 ensembl protein_coding_gene 326442 327989 . - . ID=Phyra79365;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000063;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 326442 327989 . - . ID=Phyra79365;Parent=Phyra79365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 326442 327989 . - 0 ID=Phyra79365;Parent=Phyra79365;rank=1 scaffold_39 . exon 326442 327989 . - . ID=Phyra79365.1;Parent=Phyra79365;constitutive=1;rank=1 scaffold_39 . biological_region 334777 334778 0.999 + . logic_name=eponine scaffold_39 . repeat_region 336149 336180 . ? . description=trf scaffold_39 . biological_region 337251 337254 0.999 - . logic_name=eponine scaffold_39 . biological_region 338283 338284 0.999 + . logic_name=eponine scaffold_39 . biological_region 338902 338902 0.999 - . logic_name=eponine scaffold_39 . biological_region 339393 339396 0.999 + . logic_name=eponine scaffold_39 . repeat_region 340327 340351 . ? . description=trf scaffold_39 . repeat_region 341379 341434 . ? . description=trf scaffold_39 . repeat_region 341379 341442 . ? . description=trf scaffold_39 . repeat_region 341388 341440 . ? . description=trf scaffold_39 ensembl protein_coding_gene 338203 342471 . + . ID=Phyra79369;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000067;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 338203 342471 . + . ID=Phyra79369;Parent=Phyra79369;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 338203 338581 . + 0 ID=Phyra79369;Parent=Phyra79369;rank=1 scaffold_39 . exon 338203 338581 . + . ID=Phyra79369.1;Parent=Phyra79369;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 338667 338942 . + 0 ID=Phyra79369;Parent=Phyra79369;rank=2 scaffold_39 . exon 338667 338942 . + . ID=Phyra79369.2;Parent=Phyra79369;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 340027 342287 . + 0 ID=Phyra79369;Parent=Phyra79369;rank=3 scaffold_39 . exon 340027 342287 . + . ID=Phyra79369.3;Parent=Phyra79369;constitutive=1;ensembl_phase=1;rank=3 scaffold_39 . CDS 342364 342471 . + 0 ID=Phyra79369;Parent=Phyra79369;rank=4 scaffold_39 . exon 342364 342471 . + . ID=Phyra79369.4;Parent=Phyra79369;constitutive=1;rank=4 scaffold_39 ensembl protein_coding_gene 342817 344434 . - . ID=Phyra79370;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000068;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 342817 344434 . - . ID=Phyra79370;Parent=Phyra79370;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 342817 343920 . - 0 ID=Phyra79370;Parent=Phyra79370;rank=2 scaffold_39 . exon 342817 343920 . - . ID=Phyra79370.2;Parent=Phyra79370;constitutive=1;rank=2 scaffold_39 . CDS 343979 344434 . - 0 ID=Phyra79370;Parent=Phyra79370;rank=1 scaffold_39 . exon 343979 344434 . - . ID=Phyra79370.1;Parent=Phyra79370;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 345506 346579 . + . ID=Phyra79371;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000069;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 345506 346579 . + . ID=Phyra79371;Parent=Phyra79371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 345506 346579 . + 0 ID=Phyra79371;Parent=Phyra79371;rank=1 scaffold_39 . exon 345506 346579 . + . ID=Phyra79371.1;Parent=Phyra79371;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 348117 351242 . + . ID=Phyra79372;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000070;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 348117 351242 . + . ID=Phyra79372;Parent=Phyra79372;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 348117 350682 . + 0 ID=Phyra79372;Parent=Phyra79372;rank=1 scaffold_39 . exon 348117 350682 . + . ID=Phyra79372.1;Parent=Phyra79372;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 350761 351242 . + 0 ID=Phyra79372;Parent=Phyra79372;rank=2 scaffold_39 . exon 350761 351242 . + . ID=Phyra79372.2;Parent=Phyra79372;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 ensembl protein_coding_gene 351409 353517 . - . ID=Phyra79373;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000071;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 351409 353517 . - . ID=Phyra79373;Parent=Phyra79373;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 351409 352252 . - 0 ID=Phyra79373;Parent=Phyra79373;rank=2 scaffold_39 . exon 351409 352252 . - . ID=Phyra79373.2;Parent=Phyra79373;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 352316 353517 . - 0 ID=Phyra79373;Parent=Phyra79373;rank=1 scaffold_39 . exon 352316 353517 . - . ID=Phyra79373.1;Parent=Phyra79373;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . biological_region 355588 355590 0.999 - . logic_name=eponine scaffold_39 . biological_region 358425 358426 0.999 - . logic_name=eponine scaffold_39 . biological_region 360519 360520 0.999 - . logic_name=eponine scaffold_39 ensembl protein_coding_gene 355042 357456 . + . ID=Phyra79374;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000072;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 355042 357456 . + . ID=Phyra79374;Parent=Phyra79374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 355042 356177 . + 0 ID=Phyra79374;Parent=Phyra79374;rank=1 scaffold_39 . exon 355042 356177 . + . ID=Phyra79374.1;Parent=Phyra79374;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . CDS 356388 356735 . + 0 ID=Phyra79374;Parent=Phyra79374;rank=2 scaffold_39 . exon 356388 356735 . + . ID=Phyra79374.2;Parent=Phyra79374;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_39 . CDS 356811 357456 . + 0 ID=Phyra79374;Parent=Phyra79374;rank=3 scaffold_39 . exon 356811 357456 . + . ID=Phyra79374.3;Parent=Phyra79374;constitutive=1;ensembl_phase=2;rank=3 scaffold_39 ensembl protein_coding_gene 358256 358828 . + . ID=Phyra79375;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000073;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 358256 358828 . + . ID=Phyra79375;Parent=Phyra79375;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 358256 358828 . + 0 ID=Phyra79375;Parent=Phyra79375;rank=1 scaffold_39 . exon 358256 358828 . + . ID=Phyra79375.1;Parent=Phyra79375;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 359197 359673 . + . ID=Phyra79376;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000074;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 359197 359673 . + . ID=Phyra79376;Parent=Phyra79376;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 359197 359673 . + 0 ID=Phyra79376;Parent=Phyra79376;rank=1 scaffold_39 . exon 359197 359673 . + . ID=Phyra79376.1;Parent=Phyra79376;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 360162 364280 . - . ID=Phyra79377;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000075;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 360162 364280 . - . ID=Phyra79377;Parent=Phyra79377;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 360162 364280 . - 0 ID=Phyra79377;Parent=Phyra79377;rank=1 scaffold_39 . exon 360162 364280 . - . ID=Phyra79377.1;Parent=Phyra79377;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 367280 368212 . - . ID=Phyra79378;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000076;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 367280 368212 . - . ID=Phyra79378;Parent=Phyra79378;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 367280 368033 . - 0 ID=Phyra79378;Parent=Phyra79378;rank=2 scaffold_39 . exon 367280 368033 . - . ID=Phyra79378.2;Parent=Phyra79378;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 368121 368212 . - 0 ID=Phyra79378;Parent=Phyra79378;rank=1 scaffold_39 . exon 368121 368212 . - . ID=Phyra79378.1;Parent=Phyra79378;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 ensembl protein_coding_gene 368780 371339 . + . ID=Phyra79379;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000077;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 368780 371339 . + . ID=Phyra79379;Parent=Phyra79379;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 368780 369012 . + 0 ID=Phyra79379;Parent=Phyra79379;rank=1 scaffold_39 . exon 368780 369012 . + . ID=Phyra79379.1;Parent=Phyra79379;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . CDS 369143 369326 . + 0 ID=Phyra79379;Parent=Phyra79379;rank=2 scaffold_39 . exon 369143 369326 . + . ID=Phyra79379.2;Parent=Phyra79379;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 369386 369583 . + 0 ID=Phyra79379;Parent=Phyra79379;rank=3 scaffold_39 . exon 369386 369583 . + . ID=Phyra79379.3;Parent=Phyra79379;constitutive=1;rank=3 scaffold_39 . CDS 370098 371339 . + 0 ID=Phyra79379;Parent=Phyra79379;rank=4 scaffold_39 . exon 370098 371339 . + . ID=Phyra79379.4;Parent=Phyra79379;constitutive=1;rank=4 scaffold_39 ensembl protein_coding_gene 371481 374663 . + . ID=Phyra79380;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000078;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 371481 374663 . + . ID=Phyra79380;Parent=Phyra79380;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 371481 371530 . + 0 ID=Phyra79380;Parent=Phyra79380;rank=1 scaffold_39 . exon 371481 371530 . + . ID=Phyra79380.1;Parent=Phyra79380;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . CDS 371633 371912 . + 0 ID=Phyra79380;Parent=Phyra79380;rank=2 scaffold_39 . exon 371633 371912 . + . ID=Phyra79380.2;Parent=Phyra79380;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 371990 372065 . + 0 ID=Phyra79380;Parent=Phyra79380;rank=3 scaffold_39 . exon 371990 372065 . + . ID=Phyra79380.3;Parent=Phyra79380;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_39 . CDS 372130 372194 . + 0 ID=Phyra79380;Parent=Phyra79380;rank=4 scaffold_39 . exon 372130 372194 . + . ID=Phyra79380.4;Parent=Phyra79380;constitutive=1;ensembl_phase=1;rank=4 scaffold_39 . CDS 372586 373214 . + 0 ID=Phyra79380;Parent=Phyra79380;rank=5 scaffold_39 . exon 372586 373214 . + . ID=Phyra79380.5;Parent=Phyra79380;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_39 . CDS 373448 374663 . + 0 ID=Phyra79380;Parent=Phyra79380;rank=6 scaffold_39 . biological_region 379521 379524 0.999 + . logic_name=eponine scaffold_39 . biological_region 379568 379570 0.999 - . logic_name=eponine scaffold_39 ensembl protein_coding_gene 378447 379017 . - . ID=Phyra71701;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_39000005;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 378447 379017 . - . ID=Phyra71701;Parent=Phyra71701;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 378447 378845 . - 0 ID=Phyra71701;Parent=Phyra71701;rank=2 scaffold_39 . exon 378447 378845 . - . ID=Phyra71701.2;Parent=Phyra71701;constitutive=1;rank=2 scaffold_39 . CDS 378949 379017 . - 0 ID=Phyra71701;Parent=Phyra71701;rank=1 scaffold_39 . exon 378949 379017 . - . ID=Phyra71701.1;Parent=Phyra71701;constitutive=1;rank=1 scaffold_39 . exon 373448 374663 . + . ID=Phyra79380.6;Parent=Phyra79380;constitutive=1;ensembl_phase=2;rank=6 scaffold_39 ensembl protein_coding_gene 375787 376593 . - . ID=Phyra79381;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000079;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 375787 376593 . - . ID=Phyra79381;Parent=Phyra79381;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 375787 376593 . - 0 ID=Phyra79381;Parent=Phyra79381;rank=1 scaffold_39 . exon 375787 376593 . - . ID=Phyra79381.1;Parent=Phyra79381;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 377120 378166 . + . ID=Phyra79382;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000080;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 377120 378166 . + . ID=Phyra79382;Parent=Phyra79382;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 377120 378166 . + 0 ID=Phyra79382;Parent=Phyra79382;rank=1 scaffold_39 . exon 377120 378166 . + . ID=Phyra79382.1;Parent=Phyra79382;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 379407 394472 . + . ID=Phyra79384;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000082;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 379407 394472 . + . ID=Phyra79384;Parent=Phyra79384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 379407 380201 . + 0 ID=Phyra79384;Parent=Phyra79384;rank=1 scaffold_39 . exon 379407 380201 . + . ID=Phyra79384.1;Parent=Phyra79384;constitutive=1;rank=1 scaffold_39 . CDS 380277 394472 . + 0 ID=Phyra79384;Parent=Phyra79384;rank=2 scaffold_39 . exon 380277 394472 . + . ID=Phyra79384.2;Parent=Phyra79384;constitutive=1;rank=2 scaffold_39 . biological_region 394087 394087 0.999 - . logic_name=eponine scaffold_39 . biological_region 394136 394136 0.999 - . logic_name=eponine scaffold_39 . repeat_region 395793 395815 . ? . description=trf scaffold_39 . repeat_region 395793 395815 . ? . description=dust scaffold_39 . repeat_region 396558 396577 . ? . description=dust scaffold_39 . biological_region 397144 397144 0.999 + . logic_name=eponine scaffold_39 . biological_region 397197 397204 0.999 - . logic_name=eponine scaffold_39 . biological_region 397623 397624 0.999 - . logic_name=eponine scaffold_39 . repeat_region 397731 397766 . ? . description=trf scaffold_39 . repeat_region 397731 397766 . ? . description=trf scaffold_39 . repeat_region 398029 423921 . ? . description=dust scaffold_39 ensembl protein_coding_gene 395753 397462 . - . ID=Phyra48330;biotype=protein_coding;external_name=gwEuk.39.71.1;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 395753 397462 . - . ID=Phyra48330;Parent=Phyra48330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 395753 397462 . - 0 ID=Phyra48330;Parent=Phyra48330;rank=1 scaffold_39 . exon 395753 397462 . - . ID=Phyra48330.1;Parent=Phyra48330;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 379407 394472 . + . ID=Phyra79384;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000082;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 379407 394472 . + . ID=Phyra79384;Parent=Phyra79384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 379407 380201 . + 0 ID=Phyra79384;Parent=Phyra79384;rank=1 scaffold_39 . CDS 380277 394472 . + 0 ID=Phyra79384;Parent=Phyra79384;rank=2 scaffold_39 . exon 380277 394472 . + . ID=Phyra79384.2;Parent=Phyra79384;constitutive=1;rank=2 scaffold_39 . repeat_region 398029 423921 . ? . description=dust scaffold_39 . biological_region 427336 427338 0.999 - . logic_name=eponine scaffold_39 . biological_region 428394 428399 0.999 + . logic_name=eponine scaffold_39 ensembl protein_coding_gene 427751 428686 . - . ID=Phyra79386;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000084;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 427751 428686 . - . ID=Phyra79386;Parent=Phyra79386;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 427751 427896 . - 0 ID=Phyra79386;Parent=Phyra79386;rank=3 scaffold_39 . exon 427751 427896 . - . ID=Phyra79386.3;Parent=Phyra79386;constitutive=1;ensembl_phase=1;rank=3 scaffold_39 . CDS 427921 427938 . - 0 ID=Phyra79386;Parent=Phyra79386;rank=2 scaffold_39 . exon 427921 427938 . - . ID=Phyra79386.2;Parent=Phyra79386;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 427993 428686 . - 0 ID=Phyra79386;Parent=Phyra79386;rank=1 scaffold_39 . exon 427993 428686 . - . ID=Phyra79386.1;Parent=Phyra79386;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 ensembl protein_coding_gene 431556 432210 . + . ID=Phyra79387;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_39000085;logic_name=jgi_phyra1 scaffold_39 ensembl transcript 431556 432210 . + . ID=Phyra79387;Parent=Phyra79387;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_39 . CDS 431556 432210 . + 0 ID=Phyra79387;Parent=Phyra79387;rank=1 scaffold_39 . exon 431556 432210 . + . ID=Phyra79387.1;Parent=Phyra79387;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_37 1 441994 scaffold_37 . biological_region 482 490 0.999 - . logic_name=eponine scaffold_37 . repeat_region 830 2381 . ? . description=dust scaffold_37 . biological_region 3442 3445 0.999 + . logic_name=eponine scaffold_37 . repeat_region 3690 4527 . ? . description=dust scaffold_37 . repeat_region 5546 5632 . ? . description=trf scaffold_37 . repeat_region 6703 19585 . ? . description=dust scaffold_37 . biological_region 20410 20414 0.999 + . logic_name=eponine scaffold_37 . repeat_region 20725 20732 . ? . description=dust scaffold_37 . repeat_region 21286 21307 . ? . description=trf scaffold_37 . repeat_region 23170 23212 . ? . description=trf scaffold_37 . repeat_region 23311 23357 . ? . description=trf scaffold_37 . biological_region 23616 23620 0.999 - . logic_name=eponine scaffold_37 . biological_region 23635 23637 0.999 - . logic_name=eponine scaffold_37 . repeat_region 24277 24953 . - . description=GypsyPi-1c_I-int scaffold_37 . repeat_region 24954 25259 . - . description=GypsyPi-1c_LTR scaffold_37 . repeat_region 26299 26375 . - . description=GypsyPi-1c_I-int scaffold_37 . repeat_region 26513 26576 . - . description=GypsyPi-1c_I-int scaffold_37 . biological_region 27781 27786 0.999 - . logic_name=eponine scaffold_37 . repeat_region 27842 28381 . ? . description=dust scaffold_37 . biological_region 28445 28446 0.999 + . logic_name=eponine scaffold_37 . repeat_region 28520 28798 . - . description=GypsyPi-1c_I-int scaffold_37 . repeat_region 29108 29686 . - . description=GypsyPi-1c_I-int scaffold_37 ensembl protein_coding_gene 19795 23119 . + . ID=Phyra79080;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000001;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 19795 23119 . + . ID=Phyra79080;Parent=Phyra79080;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 19795 19823 . + 0 ID=Phyra79080;Parent=Phyra79080;rank=1 scaffold_37 . exon 19795 19823 . + . ID=Phyra79080.1;Parent=Phyra79080;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . CDS 19859 20481 . + 0 ID=Phyra79080;Parent=Phyra79080;rank=2 scaffold_37 . exon 19859 20481 . + . ID=Phyra79080.2;Parent=Phyra79080;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 20549 20688 . + 0 ID=Phyra79080;Parent=Phyra79080;rank=3 scaffold_37 . exon 20549 20688 . + . ID=Phyra79080.3;Parent=Phyra79080;constitutive=1;ensembl_phase=1;rank=3 scaffold_37 . CDS 21043 22948 . + 0 ID=Phyra79080;Parent=Phyra79080;rank=4 scaffold_37 . exon 21043 22948 . + . ID=Phyra79080.4;Parent=Phyra79080;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_37 . CDS 22983 23119 . + 0 ID=Phyra79080;Parent=Phyra79080;rank=5 scaffold_37 . exon 22983 23119 . + . ID=Phyra79080.5;Parent=Phyra79080;constitutive=1;ensembl_phase=1;rank=5 scaffold_37 ensembl protein_coding_gene 23698 24866 . - . ID=Phyra79081;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000002;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 23698 24866 . - . ID=Phyra79081;Parent=Phyra79081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 23698 23755 . - 0 ID=Phyra79081;Parent=Phyra79081;rank=3 scaffold_37 . exon 23698 23755 . - . ID=Phyra79081.3;Parent=Phyra79081;constitutive=1;ensembl_phase=2;rank=3 scaffold_37 . CDS 23805 24212 . - 0 ID=Phyra79081;Parent=Phyra79081;rank=2 scaffold_37 . exon 23805 24212 . - . ID=Phyra79081.2;Parent=Phyra79081;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_37 . CDS 24328 24866 . - 0 ID=Phyra79081;Parent=Phyra79081;rank=1 scaffold_37 . exon 24328 24866 . - . ID=Phyra79081.1;Parent=Phyra79081;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 ensembl protein_coding_gene 28756 34598 . - . ID=Phyra79082;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000003;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 28756 34598 . - . ID=Phyra79082;Parent=Phyra79082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 28756 28762 . - 0 ID=Phyra79082;Parent=Phyra79082;rank=12 scaffold_37 . exon 28756 28762 . - . ID=Phyra79082.12;Parent=Phyra79082;constitutive=1;ensembl_phase=2;rank=12 scaffold_37 . CDS 28803 28894 . - 0 ID=Phyra79082;Parent=Phyra79082;rank=11 scaffold_37 . exon 28803 28894 . - . ID=Phyra79082.11;Parent=Phyra79082;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_37 . CDS 29058 29297 . - 0 ID=Phyra79082;Parent=Phyra79082;rank=10 scaffold_37 . exon 29058 29297 . - . ID=Phyra79082.10;Parent=Phyra79082;constitutive=1;rank=10 scaffold_37 . CDS 30530 30739 . - 0 ID=Phyra79082;Parent=Phyra79082;rank=9 scaffold_37 . CDS 30803 30962 . - 0 ID=Phyra79082;Parent=Phyra79082;rank=8 scaffold_37 . CDS 31035 31362 . - 0 ID=Phyra79082;Parent=Phyra79082;rank=7 scaffold_37 . CDS 31414 31622 . - 0 ID=Phyra79082;Parent=Phyra79082;rank=6 scaffold_37 . CDS 31660 32199 . - 0 ID=Phyra79082;Parent=Phyra79082;rank=5 scaffold_37 . CDS 32324 32568 . - 0 ID=Phyra79082;Parent=Phyra79082;rank=4 scaffold_37 . CDS 32772 32915 . - 0 ID=Phyra79082;Parent=Phyra79082;rank=3 scaffold_37 . CDS 33038 33905 . - 0 ID=Phyra79082;Parent=Phyra79082;rank=2 scaffold_37 . CDS 34159 34598 . - 0 ID=Phyra79082;Parent=Phyra79082;rank=1 scaffold_37 . exon 30530 30739 . - . ID=Phyra79082.9;Parent=Phyra79082;constitutive=1;rank=9 scaffold_37 . exon 30803 30962 . - . ID=Phyra79082.8;Parent=Phyra79082;constitutive=1;ensembl_phase=2;rank=8 scaffold_37 . exon 31035 31362 . - . ID=Phyra79082.7;Parent=Phyra79082;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_37 . exon 31414 31622 . - . ID=Phyra79082.6;Parent=Phyra79082;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_37 . exon 31660 32199 . - . ID=Phyra79082.5;Parent=Phyra79082;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_37 . exon 32324 32568 . - . ID=Phyra79082.4;Parent=Phyra79082;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_37 . exon 32772 32915 . - . ID=Phyra79082.3;Parent=Phyra79082;constitutive=1;rank=3 scaffold_37 . exon 33038 33905 . - . ID=Phyra79082.2;Parent=Phyra79082;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . exon 34159 34598 . - . ID=Phyra79082.1;Parent=Phyra79082;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 ensembl protein_coding_gene 35475 36390 . + . ID=Phyra95288;biotype=protein_coding;external_name=C_scaffold_37000001;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 35475 36390 . + . ID=Phyra95288;Parent=Phyra95288;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 35475 36202 . + 0 ID=Phyra95288;Parent=Phyra95288;rank=1 scaffold_37 . exon 35475 36202 . + . ID=Phyra95288.1;Parent=Phyra95288;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . CDS 36381 36390 . + 0 ID=Phyra95288;Parent=Phyra95288;rank=2 scaffold_37 . exon 36381 36390 . + . ID=Phyra95288.2;Parent=Phyra95288;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . biological_region 41080 41080 0.999 + . logic_name=eponine scaffold_37 . biological_region 44341 44346 0.999 - . logic_name=eponine scaffold_37 . biological_region 44400 44402 0.999 + . logic_name=eponine scaffold_37 . repeat_region 46724 46793 . ? . description=dust scaffold_37 . repeat_region 46737 46774 . ? . description=trf scaffold_37 . repeat_region 46737 46775 . ? . description=trf scaffold_37 . repeat_region 48023 48030 . ? . description=dust scaffold_37 . biological_region 48383 48383 0.999 + . logic_name=eponine scaffold_37 . repeat_region 48745 48752 . ? . description=dust scaffold_37 ensembl protein_coding_gene 40951 42078 . + . ID=Phyra71679;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_37000001;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 40951 42078 . + . ID=Phyra71679;Parent=Phyra71679;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 40951 41131 . + 0 ID=Phyra71679;Parent=Phyra71679;rank=1 scaffold_37 . exon 40951 41131 . + . ID=Phyra71679.1;Parent=Phyra71679;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 41199 41275 . + 0 ID=Phyra71679;Parent=Phyra71679;rank=2 scaffold_37 . exon 41199 41275 . + . ID=Phyra71679.2;Parent=Phyra71679;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 41349 41624 . + 0 ID=Phyra71679;Parent=Phyra71679;rank=3 scaffold_37 . exon 41349 41624 . + . ID=Phyra71679.3;Parent=Phyra71679;constitutive=1;rank=3 scaffold_37 . CDS 41717 41740 . + 0 ID=Phyra71679;Parent=Phyra71679;rank=4 scaffold_37 . exon 41717 41740 . + . ID=Phyra71679.4;Parent=Phyra71679;constitutive=1;rank=4 scaffold_37 . CDS 41820 41903 . + 0 ID=Phyra71679;Parent=Phyra71679;rank=5 scaffold_37 . exon 41820 41903 . + . ID=Phyra71679.5;Parent=Phyra71679;constitutive=1;rank=5 scaffold_37 . CDS 41977 42078 . + 0 ID=Phyra71679;Parent=Phyra71679;rank=6 scaffold_37 . exon 41977 42078 . + . ID=Phyra71679.6;Parent=Phyra71679;constitutive=1;rank=6 scaffold_37 ensembl protein_coding_gene 42169 43941 . - . ID=Phyra71680;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_37000002;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 42169 43941 . - . ID=Phyra71680;Parent=Phyra71680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 42169 43941 . - 0 ID=Phyra71680;Parent=Phyra71680;rank=1 scaffold_37 . exon 42169 43941 . - . ID=Phyra71680.1;Parent=Phyra71680;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 39530 40623 . - . ID=Phyra79084;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000005;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 39530 40623 . - . ID=Phyra79084;Parent=Phyra79084;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 39530 39574 . - 0 ID=Phyra79084;Parent=Phyra79084;rank=4 scaffold_37 . exon 39530 39574 . - . ID=Phyra79084.4;Parent=Phyra79084;constitutive=1;rank=4 scaffold_37 . CDS 39619 39863 . - 0 ID=Phyra79084;Parent=Phyra79084;rank=3 scaffold_37 . exon 39619 39863 . - . ID=Phyra79084.3;Parent=Phyra79084;constitutive=1;ensembl_phase=1;rank=3 scaffold_37 . CDS 40038 40490 . - 0 ID=Phyra79084;Parent=Phyra79084;rank=2 scaffold_37 . exon 40038 40490 . - . ID=Phyra79084.2;Parent=Phyra79084;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 40563 40623 . - 0 ID=Phyra79084;Parent=Phyra79084;rank=1 scaffold_37 . exon 40563 40623 . - . ID=Phyra79084.1;Parent=Phyra79084;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 ensembl protein_coding_gene 44118 48714 . + . ID=Phyra79087;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000008;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 44118 48714 . + . ID=Phyra79087;Parent=Phyra79087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 44118 45588 . + 0 ID=Phyra79087;Parent=Phyra79087;rank=1 scaffold_37 . exon 44118 45588 . + . ID=Phyra79087.1;Parent=Phyra79087;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 45760 46238 . + 0 ID=Phyra79087;Parent=Phyra79087;rank=2 scaffold_37 . exon 45760 46238 . + . ID=Phyra79087.2;Parent=Phyra79087;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 46398 46847 . + 0 ID=Phyra79087;Parent=Phyra79087;rank=3 scaffold_37 . exon 46398 46847 . + . ID=Phyra79087.3;Parent=Phyra79087;constitutive=1;rank=3 scaffold_37 . CDS 46915 48714 . + 0 ID=Phyra79087;Parent=Phyra79087;rank=4 scaffold_37 . exon 46915 48714 . + . ID=Phyra79087.4;Parent=Phyra79087;constitutive=1;rank=4 scaffold_37 ensembl protein_coding_gene 49579 50878 . - . ID=Phyra79088;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000009;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 49579 50878 . - . ID=Phyra79088;Parent=Phyra79088;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 49579 50331 . - 0 ID=Phyra79088;Parent=Phyra79088;rank=2 scaffold_37 . exon 49579 50331 . - . ID=Phyra79088.2;Parent=Phyra79088;constitutive=1;rank=2 scaffold_37 . CDS 50435 50878 . - 0 ID=Phyra79088;Parent=Phyra79088;rank=1 scaffold_37 . exon 50435 50878 . - . ID=Phyra79088.1;Parent=Phyra79088;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 51704 53586 . + . ID=Phyra79089;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000010;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 51704 53586 . + . ID=Phyra79089;Parent=Phyra79089;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 51704 51866 . + 0 ID=Phyra79089;Parent=Phyra79089;rank=1 scaffold_37 . exon 51704 51866 . + . ID=Phyra79089.1;Parent=Phyra79089;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 51962 53586 . + 0 ID=Phyra79089;Parent=Phyra79089;rank=2 scaffold_37 . exon 51962 53586 . + . ID=Phyra79089.2;Parent=Phyra79089;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 ensembl protein_coding_gene 53778 57837 . - . ID=Phyra79090;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000011;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 53778 57837 . - . ID=Phyra79090;Parent=Phyra79090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 53778 54624 . - 0 ID=Phyra79090;Parent=Phyra79090;rank=4 scaffold_37 . exon 53778 54624 . - . ID=Phyra79090.4;Parent=Phyra79090;constitutive=1;ensembl_phase=2;rank=4 scaffold_37 . CDS 54982 55183 . - 0 ID=Phyra79090;Parent=Phyra79090;rank=3 scaffold_37 . exon 54982 55183 . - . ID=Phyra79090.3;Parent=Phyra79090;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_37 . CDS 55261 57367 . - 0 ID=Phyra79090;Parent=Phyra79090;rank=2 scaffold_37 . exon 55261 57367 . - . ID=Phyra79090.2;Parent=Phyra79090;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_37 . CDS 57433 57837 . - 0 ID=Phyra79090;Parent=Phyra79090;rank=1 scaffold_37 . exon 57433 57837 . - . ID=Phyra79090.1;Parent=Phyra79090;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 58456 59040 . - . ID=Phyra79091;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000012;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 58456 59040 . - . ID=Phyra79091;Parent=Phyra79091;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 58456 59040 . - 0 ID=Phyra79091;Parent=Phyra79091;rank=1 scaffold_37 . exon 58456 59040 . - . ID=Phyra79091.1;Parent=Phyra79091;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 62980 64105 . + . ID=Phyra79093;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000014;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 62980 64105 . + . ID=Phyra79093;Parent=Phyra79093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 62980 63147 . + 0 ID=Phyra79093;Parent=Phyra79093;rank=1 scaffold_37 . exon 62980 63147 . + . ID=Phyra79093.1;Parent=Phyra79093;constitutive=1;rank=1 scaffold_37 . CDS 63208 63346 . + 0 ID=Phyra79093;Parent=Phyra79093;rank=2 scaffold_37 . exon 63208 63346 . + . ID=Phyra79093.2;Parent=Phyra79093;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_37 . CDS 63421 63964 . + 0 ID=Phyra79093;Parent=Phyra79093;rank=3 scaffold_37 . exon 63421 63964 . + . ID=Phyra79093.3;Parent=Phyra79093;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_37 . CDS 64102 64105 . + 0 ID=Phyra79093;Parent=Phyra79093;rank=4 scaffold_37 . exon 64102 64105 . + . ID=Phyra79093.4;Parent=Phyra79093;constitutive=1;ensembl_phase=2;rank=4 scaffold_37 ensembl protein_coding_gene 65085 69215 . + . ID=Phyra79094;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000015;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 65085 69215 . + . ID=Phyra79094;Parent=Phyra79094;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 65085 69215 . + 0 ID=Phyra79094;Parent=Phyra79094;rank=1 scaffold_37 . exon 65085 69215 . + . ID=Phyra79094.1;Parent=Phyra79094;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 62196 62840 . - . ID=Phyra95292;biotype=protein_coding;external_name=C_scaffold_37000005;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 62196 62840 . - . ID=Phyra95292;Parent=Phyra95292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 62196 62243 . - 0 ID=Phyra95292;Parent=Phyra95292;rank=3 scaffold_37 . exon 62196 62243 . - . ID=Phyra95292.3;Parent=Phyra95292;constitutive=1;rank=3 scaffold_37 . CDS 62438 62638 . - 0 ID=Phyra95292;Parent=Phyra95292;rank=2 scaffold_37 . exon 62438 62638 . - . ID=Phyra95292.2;Parent=Phyra95292;constitutive=1;rank=2 scaffold_37 . CDS 62694 62840 . - 0 ID=Phyra95292;Parent=Phyra95292;rank=1 scaffold_37 . exon 62694 62840 . - . ID=Phyra95292.1;Parent=Phyra95292;constitutive=1;rank=1 scaffold_37 . biological_region 71363 71366 0.999 + . logic_name=eponine scaffold_37 . biological_region 71869 71872 0.999 + . logic_name=eponine scaffold_37 . biological_region 72002 72003 0.999 - . logic_name=eponine scaffold_37 . biological_region 72339 72344 0.999 + . logic_name=eponine scaffold_37 . biological_region 73900 73902 0.999 + . logic_name=eponine scaffold_37 . biological_region 74833 74836 0.999 - . logic_name=eponine scaffold_37 ensembl protein_coding_gene 73933 74949 . + . ID=Phyra71681;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_37000003;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 73933 74949 . + . ID=Phyra71681;Parent=Phyra71681;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 73933 74949 . + 0 ID=Phyra71681;Parent=Phyra71681;rank=1 scaffold_37 . exon 73933 74949 . + . ID=Phyra71681.1;Parent=Phyra71681;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 69381 70811 . - . ID=Phyra79095;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000016;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 69381 70811 . - . ID=Phyra79095;Parent=Phyra79095;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 69381 69460 . - 0 ID=Phyra79095;Parent=Phyra79095;rank=2 scaffold_37 . exon 69381 69460 . - . ID=Phyra79095.2;Parent=Phyra79095;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 69755 70811 . - 0 ID=Phyra79095;Parent=Phyra79095;rank=1 scaffold_37 . exon 69755 70811 . - . ID=Phyra79095.1;Parent=Phyra79095;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 ensembl protein_coding_gene 72091 73509 . + . ID=Phyra79096;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000017;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 72091 73509 . + . ID=Phyra79096;Parent=Phyra79096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 72091 73509 . + 0 ID=Phyra79096;Parent=Phyra79096;rank=1 scaffold_37 . exon 72091 73509 . + . ID=Phyra79096.1;Parent=Phyra79096;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 76106 76969 . + . ID=Phyra79098;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000019;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 76106 76969 . + . ID=Phyra79098;Parent=Phyra79098;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 76106 76969 . + 0 ID=Phyra79098;Parent=Phyra79098;rank=1 scaffold_37 . exon 76106 76969 . + . ID=Phyra79098.1;Parent=Phyra79098;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 78142 79322 . - . ID=Phyra79099;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000020;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 78142 79322 . - . ID=Phyra79099;Parent=Phyra79099;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 78142 78453 . - 0 ID=Phyra79099;Parent=Phyra79099;rank=3 scaffold_37 . exon 78142 78453 . - . ID=Phyra79099.3;Parent=Phyra79099;constitutive=1;rank=3 scaffold_37 . CDS 78524 79152 . - 0 ID=Phyra79099;Parent=Phyra79099;rank=2 scaffold_37 . exon 78524 79152 . - . ID=Phyra79099.2;Parent=Phyra79099;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 79211 79322 . - 0 ID=Phyra79099;Parent=Phyra79099;rank=1 scaffold_37 . exon 79211 79322 . - . ID=Phyra79099.1;Parent=Phyra79099;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 ensembl protein_coding_gene 81717 83174 . + . ID=Phyra79100;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000021;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 81717 83174 . + . ID=Phyra79100;Parent=Phyra79100;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 81717 83174 . + 0 ID=Phyra79100;Parent=Phyra79100;rank=1 scaffold_37 . exon 81717 83174 . + . ID=Phyra79100.1;Parent=Phyra79100;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 79725 81218 . - . ID=Phyra95296;biotype=protein_coding;external_name=C_scaffold_37000009;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 79725 81218 . - . ID=Phyra95296;Parent=Phyra95296;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 79725 80020 . - 0 ID=Phyra95296;Parent=Phyra95296;rank=4 scaffold_37 . exon 79725 80020 . - . ID=Phyra95296.4;Parent=Phyra95296;constitutive=1;ensembl_phase=1;rank=4 scaffold_37 . CDS 80076 80492 . - 0 ID=Phyra95296;Parent=Phyra95296;rank=3 scaffold_37 . exon 80076 80492 . - . ID=Phyra95296.3;Parent=Phyra95296;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_37 . CDS 80607 80826 . - 0 ID=Phyra95296;Parent=Phyra95296;rank=2 scaffold_37 . exon 80607 80826 . - . ID=Phyra95296.2;Parent=Phyra95296;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_37 . CDS 80892 81218 . - 0 ID=Phyra95296;Parent=Phyra95296;rank=1 scaffold_37 . exon 80892 81218 . - . ID=Phyra95296.1;Parent=Phyra95296;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 83489 84516 . + . ID=Phyra95298;biotype=protein_coding;external_name=C_scaffold_37000011;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 83489 84516 . + . ID=Phyra95298;Parent=Phyra95298;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 83489 83826 . + 0 ID=Phyra95298;Parent=Phyra95298;rank=1 scaffold_37 . exon 83489 83826 . + . ID=Phyra95298.1;Parent=Phyra95298;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . CDS 83863 84179 . + 0 ID=Phyra95298;Parent=Phyra95298;rank=2 scaffold_37 . exon 83863 84179 . + . ID=Phyra95298.2;Parent=Phyra95298;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 84216 84284 . + 0 ID=Phyra95298;Parent=Phyra95298;rank=3 scaffold_37 . exon 84216 84284 . + . ID=Phyra95298.3;Parent=Phyra95298;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_37 . CDS 84506 84516 . + 0 ID=Phyra95298;Parent=Phyra95298;rank=4 scaffold_37 . exon 84506 84516 . + . ID=Phyra95298.4;Parent=Phyra95298;constitutive=1;ensembl_phase=1;rank=4 scaffold_37 ensembl protein_coding_gene 88989 92087 . + . ID=Phyra79101;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000022;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 88989 92087 . + . ID=Phyra79101;Parent=Phyra79101;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 88989 90384 . + 0 ID=Phyra79101;Parent=Phyra79101;rank=1 scaffold_37 . exon 88989 90384 . + . ID=Phyra79101.1;Parent=Phyra79101;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 90758 90818 . + 0 ID=Phyra79101;Parent=Phyra79101;rank=2 scaffold_37 . exon 90758 90818 . + . ID=Phyra79101.2;Parent=Phyra79101;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_37 . CDS 90899 92087 . + 0 ID=Phyra79101;Parent=Phyra79101;rank=3 scaffold_37 . exon 90899 92087 . + . ID=Phyra79101.3;Parent=Phyra79101;constitutive=1;ensembl_phase=2;rank=3 scaffold_37 ensembl protein_coding_gene 92235 98054 . - . ID=Phyra79102;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000023;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 92235 98054 . - . ID=Phyra79102;Parent=Phyra79102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 92235 98054 . - 0 ID=Phyra79102;Parent=Phyra79102;rank=1 scaffold_37 . exon 92235 98054 . - . ID=Phyra79102.1;Parent=Phyra79102;constitutive=1;rank=1 scaffold_37 . biological_region 100789 100793 0.999 - . logic_name=eponine scaffold_37 . repeat_region 103103 103144 . ? . description=trf scaffold_37 . biological_region 103543 103543 0.999 + . logic_name=eponine scaffold_37 . repeat_region 107874 107893 . ? . description=trf scaffold_37 . repeat_region 107874 107893 . ? . description=dust scaffold_37 ensembl protein_coding_gene 99476 101059 . + . ID=Phyra71682;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_37000004;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 99476 101059 . + . ID=Phyra71682;Parent=Phyra71682;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 99476 101059 . + 0 ID=Phyra71682;Parent=Phyra71682;rank=1 scaffold_37 . exon 99476 101059 . + . ID=Phyra71682.1;Parent=Phyra71682;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 101381 103991 . + . ID=Phyra79104;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000025;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 101381 103991 . + . ID=Phyra79104;Parent=Phyra79104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 101381 101554 . + 0 ID=Phyra79104;Parent=Phyra79104;rank=1 scaffold_37 . exon 101381 101554 . + . ID=Phyra79104.1;Parent=Phyra79104;constitutive=1;rank=1 scaffold_37 . CDS 101611 102279 . + 0 ID=Phyra79104;Parent=Phyra79104;rank=2 scaffold_37 . exon 101611 102279 . + . ID=Phyra79104.2;Parent=Phyra79104;constitutive=1;rank=2 scaffold_37 . CDS 102496 102568 . + 0 ID=Phyra79104;Parent=Phyra79104;rank=3 scaffold_37 . exon 102496 102568 . + . ID=Phyra79104.3;Parent=Phyra79104;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_37 . CDS 102805 103991 . + 0 ID=Phyra79104;Parent=Phyra79104;rank=4 scaffold_37 . exon 102805 103991 . + . ID=Phyra79104.4;Parent=Phyra79104;constitutive=1;ensembl_phase=1;rank=4 scaffold_37 ensembl protein_coding_gene 104045 104929 . - . ID=Phyra79105;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000026;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 104045 104929 . - . ID=Phyra79105;Parent=Phyra79105;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 104045 104929 . - 0 ID=Phyra79105;Parent=Phyra79105;rank=1 scaffold_37 . exon 104045 104929 . - . ID=Phyra79105.1;Parent=Phyra79105;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 105070 105438 . - . ID=Phyra79106;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000027;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 105070 105438 . - . ID=Phyra79106;Parent=Phyra79106;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 105070 105438 . - 0 ID=Phyra79106;Parent=Phyra79106;rank=1 scaffold_37 . exon 105070 105438 . - . ID=Phyra79106.1;Parent=Phyra79106;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 109014 110315 . - . ID=Phyra79107;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000028;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 109014 110315 . - . ID=Phyra79107;Parent=Phyra79107;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 109014 110315 . - 0 ID=Phyra79107;Parent=Phyra79107;rank=1 scaffold_37 . exon 109014 110315 . - . ID=Phyra79107.1;Parent=Phyra79107;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 111880 113286 . - . ID=Phyra79108;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000029;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 111880 113286 . - . ID=Phyra79108;Parent=Phyra79108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 111880 113286 . - 0 ID=Phyra79108;Parent=Phyra79108;rank=1 scaffold_37 . exon 111880 113286 . - . ID=Phyra79108.1;Parent=Phyra79108;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 115194 117930 . + . ID=Phyra79109;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000030;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 115194 117930 . + . ID=Phyra79109;Parent=Phyra79109;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 115194 115749 . + 0 ID=Phyra79109;Parent=Phyra79109;rank=1 scaffold_37 . exon 115194 115749 . + . ID=Phyra79109.1;Parent=Phyra79109;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 116110 116340 . + 0 ID=Phyra79109;Parent=Phyra79109;rank=2 scaffold_37 . exon 116110 116340 . + . ID=Phyra79109.2;Parent=Phyra79109;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 116365 116463 . + 0 ID=Phyra79109;Parent=Phyra79109;rank=3 scaffold_37 . exon 116365 116463 . + . ID=Phyra79109.3;Parent=Phyra79109;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_37 . CDS 116553 116966 . + 0 ID=Phyra79109;Parent=Phyra79109;rank=4 scaffold_37 . exon 116553 116966 . + . ID=Phyra79109.4;Parent=Phyra79109;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_37 . CDS 116994 117204 . + 0 ID=Phyra79109;Parent=Phyra79109;rank=5 scaffold_37 . exon 116994 117204 . + . ID=Phyra79109.5;Parent=Phyra79109;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_37 . CDS 117501 117930 . + 0 ID=Phyra79109;Parent=Phyra79109;rank=6 scaffold_37 . exon 117501 117930 . + . ID=Phyra79109.6;Parent=Phyra79109;constitutive=1;ensembl_phase=2;rank=6 scaffold_37 . repeat_region 119868 119881 . ? . description=dust scaffold_37 . repeat_region 122041 122068 . ? . description=trf scaffold_37 . repeat_region 125121 125166 . ? . description=trf scaffold_37 . repeat_region 125303 125601 . - . description=GypsyPi-1c_LTR scaffold_37 . repeat_region 125602 129088 . - . description=GypsyPi-1c_I-int scaffold_37 . biological_region 125873 125882 0.999 + . logic_name=eponine scaffold_37 . biological_region 125891 125895 0.999 - . logic_name=eponine scaffold_37 . biological_region 125925 125925 0.999 + . logic_name=eponine scaffold_37 . biological_region 125994 125996 0.999 - . logic_name=eponine scaffold_37 . repeat_region 126244 126316 . ? . description=trf scaffold_37 . biological_region 127119 127120 0.999 + . logic_name=eponine scaffold_37 ensembl protein_coding_gene 119902 121668 . - . ID=Phyra79110;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000031;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 119902 121668 . - . ID=Phyra79110;Parent=Phyra79110;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 119902 121668 . - 0 ID=Phyra79110;Parent=Phyra79110;rank=1 scaffold_37 . exon 119902 121668 . - . ID=Phyra79110.1;Parent=Phyra79110;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 125784 127995 . + . ID=Phyra79111;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000032;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 125784 127995 . + . ID=Phyra79111;Parent=Phyra79111;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 125784 126386 . + 0 ID=Phyra79111;Parent=Phyra79111;rank=1 scaffold_37 . exon 125784 126386 . + . ID=Phyra79111.1;Parent=Phyra79111;constitutive=1;rank=1 scaffold_37 . CDS 126447 126816 . + 0 ID=Phyra79111;Parent=Phyra79111;rank=2 scaffold_37 . exon 126447 126816 . + . ID=Phyra79111.2;Parent=Phyra79111;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_37 . CDS 126895 127025 . + 0 ID=Phyra79111;Parent=Phyra79111;rank=3 scaffold_37 . exon 126895 127025 . + . ID=Phyra79111.3;Parent=Phyra79111;constitutive=1;ensembl_phase=1;rank=3 scaffold_37 . CDS 127327 127995 . + 0 ID=Phyra79111;Parent=Phyra79111;rank=4 scaffold_37 . exon 127327 127995 . + . ID=Phyra79111.4;Parent=Phyra79111;constitutive=1;rank=4 scaffold_37 ensembl protein_coding_gene 132439 137427 . + . ID=Phyra79112;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000033;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 132439 137427 . + . ID=Phyra79112;Parent=Phyra79112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 132439 134292 . + 0 ID=Phyra79112;Parent=Phyra79112;rank=1 scaffold_37 . exon 132439 134292 . + . ID=Phyra79112.1;Parent=Phyra79112;constitutive=1;rank=1 scaffold_37 . CDS 134360 136096 . + 0 ID=Phyra79112;Parent=Phyra79112;rank=2 scaffold_37 . exon 134360 136096 . + . ID=Phyra79112.2;Parent=Phyra79112;constitutive=1;rank=2 scaffold_37 . CDS 136281 137199 . + 0 ID=Phyra79112;Parent=Phyra79112;rank=3 scaffold_37 . exon 136281 137199 . + . ID=Phyra79112.3;Parent=Phyra79112;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_37 . CDS 137417 137427 . + 0 ID=Phyra79112;Parent=Phyra79112;rank=4 scaffold_37 . exon 137417 137427 . + . ID=Phyra79112.4;Parent=Phyra79112;constitutive=1;ensembl_phase=1;rank=4 scaffold_37 . repeat_region 137460 138713 . ? . description=dust scaffold_37 . repeat_region 139285 139317 . ? . description=trf scaffold_37 . biological_region 139721 139723 0.999 + . logic_name=eponine scaffold_37 . biological_region 140617 140619 0.999 + . logic_name=eponine scaffold_37 . repeat_region 141587 141673 . ? . description=trf scaffold_37 . repeat_region 142300 146270 . - . description=GypsyPi-1c_I-int scaffold_37 . biological_region 142570 142573 0.999 - . logic_name=eponine scaffold_37 . biological_region 143510 143511 0.999 - . logic_name=eponine scaffold_37 . biological_region 143565 143568 0.999 + . logic_name=eponine scaffold_37 . repeat_region 146271 146582 . - . description=GypsyPi-1c_LTR scaffold_37 ensembl protein_coding_gene 142702 146183 . - . ID=Phyra79113;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000034;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 142702 146183 . - . ID=Phyra79113;Parent=Phyra79113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 142702 143757 . - 0 ID=Phyra79113;Parent=Phyra79113;rank=4 scaffold_37 . exon 142702 143757 . - . ID=Phyra79113.4;Parent=Phyra79113;constitutive=1;rank=4 scaffold_37 . CDS 143793 145077 . - 0 ID=Phyra79113;Parent=Phyra79113;rank=3 scaffold_37 . exon 143793 145077 . - . ID=Phyra79113.3;Parent=Phyra79113;constitutive=1;ensembl_phase=2;rank=3 scaffold_37 . CDS 145312 145964 . - 0 ID=Phyra79113;Parent=Phyra79113;rank=2 scaffold_37 . exon 145312 145964 . - . ID=Phyra79113.2;Parent=Phyra79113;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_37 . CDS 146013 146183 . - 0 ID=Phyra79113;Parent=Phyra79113;rank=1 scaffold_37 . exon 146013 146183 . - . ID=Phyra79113.1;Parent=Phyra79113;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 147288 147989 . + . ID=Phyra79114;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000035;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 147288 147989 . + . ID=Phyra79114;Parent=Phyra79114;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 147288 147989 . + 0 ID=Phyra79114;Parent=Phyra79114;rank=1 scaffold_37 . exon 147288 147989 . + . ID=Phyra79114.1;Parent=Phyra79114;constitutive=1;rank=1 scaffold_37 . repeat_region 160833 160882 . ? . description=dust scaffold_37 . repeat_region 163870 165129 . + . description=GypsyPi-1c_I-int scaffold_37 . biological_region 165396 165400 0.999 + . logic_name=eponine scaffold_37 . repeat_region 165608 168390 . + . description=GypsyPi-1c_I-int scaffold_37 . biological_region 165844 165848 0.999 + . logic_name=eponine scaffold_37 . biological_region 165919 165920 0.999 - . logic_name=eponine scaffold_37 ensembl protein_coding_gene 166186 168411 . + . ID=Phyra79115;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000036;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 166186 168411 . + . ID=Phyra79115;Parent=Phyra79115;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 166186 166275 . + 0 ID=Phyra79115;Parent=Phyra79115;rank=1 scaffold_37 . exon 166186 166275 . + . ID=Phyra79115.1;Parent=Phyra79115;constitutive=1;rank=1 scaffold_37 . CDS 166390 168411 . + 0 ID=Phyra79115;Parent=Phyra79115;rank=2 scaffold_37 . exon 166390 168411 . + . ID=Phyra79115.2;Parent=Phyra79115;constitutive=1;rank=2 scaffold_37 . repeat_region 168586 168672 . ? . description=trf scaffold_37 . repeat_region 174332 174418 . ? . description=trf scaffold_37 ensembl protein_coding_gene 175045 175920 . + . ID=Phyra79116;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000037;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 175045 175920 . + . ID=Phyra79116;Parent=Phyra79116;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 175045 175920 . + 0 ID=Phyra79116;Parent=Phyra79116;rank=1 scaffold_37 . exon 175045 175920 . + . ID=Phyra79116.1;Parent=Phyra79116;constitutive=1;rank=1 scaffold_37 . repeat_region 176951 177000 . ? . description=dust scaffold_37 . repeat_region 177983 178032 . ? . description=dust scaffold_37 . repeat_region 180652 180965 . ? . description=dust scaffold_37 . biological_region 184160 184162 0.999 + . logic_name=eponine scaffold_37 . biological_region 184472 184475 0.999 - . logic_name=eponine scaffold_37 . repeat_region 185550 185558 . ? . description=dust scaffold_37 . repeat_region 185567 185616 . ? . description=dust scaffold_37 ensembl protein_coding_gene 177042 177832 . - . ID=Phyra79117;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000038;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 177042 177832 . - . ID=Phyra79117;Parent=Phyra79117;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 177042 177409 . - 0 ID=Phyra79117;Parent=Phyra79117;rank=2 scaffold_37 . exon 177042 177409 . - . ID=Phyra79117.2;Parent=Phyra79117;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 177592 177832 . - 0 ID=Phyra79117;Parent=Phyra79117;rank=1 scaffold_37 . exon 177592 177832 . - . ID=Phyra79117.1;Parent=Phyra79117;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 ensembl protein_coding_gene 183041 185400 . - . ID=Phyra79118;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000039;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 183041 185400 . - . ID=Phyra79118;Parent=Phyra79118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 183041 184977 . - 0 ID=Phyra79118;Parent=Phyra79118;rank=2 scaffold_37 . exon 183041 184977 . - . ID=Phyra79118.2;Parent=Phyra79118;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 185160 185400 . - 0 ID=Phyra79118;Parent=Phyra79118;rank=1 scaffold_37 . exon 185160 185400 . - . ID=Phyra79118.1;Parent=Phyra79118;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 ensembl protein_coding_gene 189986 191986 . + . ID=Phyra79119;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000040;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 189986 191986 . + . ID=Phyra79119;Parent=Phyra79119;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 189986 191986 . + 0 ID=Phyra79119;Parent=Phyra79119;rank=1 scaffold_37 . exon 189986 191986 . + . ID=Phyra79119.1;Parent=Phyra79119;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 195173 195597 . - . ID=Phyra79120;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000041;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 195173 195597 . - . ID=Phyra79120;Parent=Phyra79120;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 195173 195555 . - 0 ID=Phyra79120;Parent=Phyra79120;rank=2 scaffold_37 . exon 195173 195555 . - . ID=Phyra79120.2;Parent=Phyra79120;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 195579 195597 . - 0 ID=Phyra79120;Parent=Phyra79120;rank=1 scaffold_37 . exon 195579 195597 . - . ID=Phyra79120.1;Parent=Phyra79120;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 ensembl protein_coding_gene 196057 199708 . + . ID=Phyra95301;biotype=protein_coding;external_name=C_scaffold_37000014;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 196057 199708 . + . ID=Phyra95301;Parent=Phyra95301;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 196057 196596 . + 0 ID=Phyra95301;Parent=Phyra95301;rank=1 scaffold_37 . exon 196057 196596 . + . ID=Phyra95301.1;Parent=Phyra95301;constitutive=1;rank=1 scaffold_37 . CDS 196627 198857 . + 0 ID=Phyra95301;Parent=Phyra95301;rank=2 scaffold_37 . CDS 199362 199708 . + 0 ID=Phyra95301;Parent=Phyra95301;rank=3 scaffold_37 . biological_region 198134 198138 0.999 - . logic_name=eponine scaffold_37 . repeat_region 205132 205139 . ? . description=dust scaffold_37 ensembl protein_coding_gene 202916 204478 . - . ID=Phyra79124;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000045;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 202916 204478 . - . ID=Phyra79124;Parent=Phyra79124;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 202916 204478 . - 0 ID=Phyra79124;Parent=Phyra79124;rank=1 scaffold_37 . exon 202916 204478 . - . ID=Phyra79124.1;Parent=Phyra79124;constitutive=1;rank=1 scaffold_37 . exon 196627 198857 . + . ID=Phyra95301.2;Parent=Phyra95301;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_37 . exon 199362 199708 . + . ID=Phyra95301.3;Parent=Phyra95301;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_37 . repeat_region 207092 207119 . ? . description=trf scaffold_37 . repeat_region 208871 208894 . ? . description=trf scaffold_37 . repeat_region 209008 209060 . ? . description=trf scaffold_37 . repeat_region 209018 209057 . ? . description=trf scaffold_37 . repeat_region 214341 214377 . ? . description=trf scaffold_37 ensembl pseudogene 211056 211456 . - . ID=Phyra48014;biotype=pseudogene;external_name=gwEuk.37.7.1;logic_name=jgi_phyra1 scaffold_37 ensembl pseudogene 211056 211456 . - . ID=Phyra48014;Parent=Phyra48014;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_37 . exon 211056 211456 . - . ID=Phyra48014.1;Parent=Phyra48014;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 ensembl protein_coding_gene 215041 216612 . - . ID=Phyra79125;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000046;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 215041 216612 . - . ID=Phyra79125;Parent=Phyra79125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 215041 216612 . - 0 ID=Phyra79125;Parent=Phyra79125;rank=1 scaffold_37 . exon 215041 216612 . - . ID=Phyra79125.1;Parent=Phyra79125;constitutive=1;rank=1 scaffold_37 . biological_region 224865 224869 0.999 - . logic_name=eponine scaffold_37 ensembl protein_coding_gene 216785 220610 . - . ID=Phyra79126;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000047;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 216785 220610 . - . ID=Phyra79126;Parent=Phyra79126;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 216785 217565 . - 0 ID=Phyra79126;Parent=Phyra79126;rank=2 scaffold_37 . exon 216785 217565 . - . ID=Phyra79126.2;Parent=Phyra79126;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 217636 220610 . - 0 ID=Phyra79126;Parent=Phyra79126;rank=1 scaffold_37 . exon 217636 220610 . - . ID=Phyra79126.1;Parent=Phyra79126;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 ensembl protein_coding_gene 224509 225827 . + . ID=Phyra79127;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000048;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 224509 225827 . + . ID=Phyra79127;Parent=Phyra79127;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 224509 225027 . + 0 ID=Phyra79127;Parent=Phyra79127;rank=1 scaffold_37 . exon 224509 225027 . + . ID=Phyra79127.1;Parent=Phyra79127;constitutive=1;rank=1 scaffold_37 . CDS 225117 225827 . + 0 ID=Phyra79127;Parent=Phyra79127;rank=2 scaffold_37 . exon 225117 225827 . + . ID=Phyra79127.2;Parent=Phyra79127;constitutive=1;rank=2 scaffold_37 . repeat_region 228481 228489 . ? . description=dust scaffold_37 . repeat_region 230352 230370 . ? . description=dust scaffold_37 . repeat_region 233554 233561 . ? . description=dust scaffold_37 . repeat_region 235134 235141 . ? . description=dust scaffold_37 ensembl protein_coding_gene 225999 228029 . - . ID=Phyra79128;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000049;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 225999 228029 . - . ID=Phyra79128;Parent=Phyra79128;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 225999 228029 . - 0 ID=Phyra79128;Parent=Phyra79128;rank=1 scaffold_37 . exon 225999 228029 . - . ID=Phyra79128.1;Parent=Phyra79128;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 231154 233169 . + . ID=Phyra79129;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000050;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 231154 233169 . + . ID=Phyra79129;Parent=Phyra79129;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 231154 233169 . + 0 ID=Phyra79129;Parent=Phyra79129;rank=1 scaffold_37 . exon 231154 233169 . + . ID=Phyra79129.1;Parent=Phyra79129;constitutive=1;rank=1 scaffold_37 . repeat_region 239127 239146 . ? . description=trf scaffold_37 . repeat_region 239146 239171 . ? . description=trf scaffold_37 . repeat_region 243458 243683 . ? . description=trf scaffold_37 . repeat_region 243783 243899 . ? . description=trf scaffold_37 . repeat_region 243915 244250 . ? . description=trf scaffold_37 . repeat_region 244219 244327 . ? . description=trf scaffold_37 . repeat_region 244219 244393 . ? . description=trf scaffold_37 ensembl protein_coding_gene 236597 238373 . - . ID=Phyra79130;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000051;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 236597 238373 . - . ID=Phyra79130;Parent=Phyra79130;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 236597 236752 . - 0 ID=Phyra79130;Parent=Phyra79130;rank=2 scaffold_37 . exon 236597 236752 . - . ID=Phyra79130.2;Parent=Phyra79130;constitutive=1;rank=2 scaffold_37 . CDS 236817 238373 . - 0 ID=Phyra79130;Parent=Phyra79130;rank=1 scaffold_37 . exon 236817 238373 . - . ID=Phyra79130.1;Parent=Phyra79130;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 238746 239286 . + . ID=Phyra79131;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000052;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 238746 239286 . + . ID=Phyra79131;Parent=Phyra79131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 238746 239037 . + 0 ID=Phyra79131;Parent=Phyra79131;rank=1 scaffold_37 . exon 238746 239037 . + . ID=Phyra79131.1;Parent=Phyra79131;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 239084 239286 . + 0 ID=Phyra79131;Parent=Phyra79131;rank=2 scaffold_37 . exon 239084 239286 . + . ID=Phyra79131.2;Parent=Phyra79131;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 ensembl protein_coding_gene 239736 242036 . - . ID=Phyra79132;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000053;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 239736 242036 . - . ID=Phyra79132;Parent=Phyra79132;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 239736 242036 . - 0 ID=Phyra79132;Parent=Phyra79132;rank=1 scaffold_37 . exon 239736 242036 . - . ID=Phyra79132.1;Parent=Phyra79132;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 243255 244802 . + . ID=Phyra79133;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000054;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 243255 244802 . + . ID=Phyra79133;Parent=Phyra79133;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 243255 244802 . + 0 ID=Phyra79133;Parent=Phyra79133;rank=1 scaffold_37 . exon 243255 244802 . + . ID=Phyra79133.1;Parent=Phyra79133;constitutive=1;rank=1 scaffold_37 . biological_region 249585 249587 0.999 + . logic_name=eponine scaffold_37 . repeat_region 254649 254660 . ? . description=dust scaffold_37 . repeat_region 254888 254905 . ? . description=dust scaffold_37 ensembl protein_coding_gene 249397 250680 . + . ID=Phyra71684;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_37000006;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 249397 250680 . + . ID=Phyra71684;Parent=Phyra71684;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 249397 249900 . + 0 ID=Phyra71684;Parent=Phyra71684;rank=1 scaffold_37 . exon 249397 249900 . + . ID=Phyra71684.1;Parent=Phyra71684;constitutive=1;rank=1 scaffold_37 . CDS 249964 250005 . + 0 ID=Phyra71684;Parent=Phyra71684;rank=2 scaffold_37 . exon 249964 250005 . + . ID=Phyra71684.2;Parent=Phyra71684;constitutive=1;rank=2 scaffold_37 . CDS 250073 250188 . + 0 ID=Phyra71684;Parent=Phyra71684;rank=3 scaffold_37 . exon 250073 250188 . + . ID=Phyra71684.3;Parent=Phyra71684;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_37 . CDS 250257 250680 . + 0 ID=Phyra71684;Parent=Phyra71684;rank=4 scaffold_37 . exon 250257 250680 . + . ID=Phyra71684.4;Parent=Phyra71684;constitutive=1;ensembl_phase=2;rank=4 scaffold_37 ensembl protein_coding_gene 246871 248639 . + . ID=Phyra79134;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000055;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 246871 248639 . + . ID=Phyra79134;Parent=Phyra79134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 246871 247091 . + 0 ID=Phyra79134;Parent=Phyra79134;rank=1 scaffold_37 . exon 246871 247091 . + . ID=Phyra79134.1;Parent=Phyra79134;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . CDS 247154 248639 . + 0 ID=Phyra79134;Parent=Phyra79134;rank=2 scaffold_37 . exon 247154 248639 . + . ID=Phyra79134.2;Parent=Phyra79134;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 ensembl protein_coding_gene 251124 251666 . - . ID=Phyra79136;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000057;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 251124 251666 . - . ID=Phyra79136;Parent=Phyra79136;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 251124 251666 . - 0 ID=Phyra79136;Parent=Phyra79136;rank=1 scaffold_37 . exon 251124 251666 . - . ID=Phyra79136.1;Parent=Phyra79136;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 256750 257175 . - . ID=Phyra79137;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000058;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 256750 257175 . - . ID=Phyra79137;Parent=Phyra79137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 256750 257175 . - 0 ID=Phyra79137;Parent=Phyra79137;rank=1 scaffold_37 . exon 256750 257175 . - . ID=Phyra79137.1;Parent=Phyra79137;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 262160 262585 . - . ID=Phyra79138;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000059;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 262160 262585 . - . ID=Phyra79138;Parent=Phyra79138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 262160 262585 . - 0 ID=Phyra79138;Parent=Phyra79138;rank=1 scaffold_37 . exon 262160 262585 . - . ID=Phyra79138.1;Parent=Phyra79138;constitutive=1;rank=1 scaffold_37 . repeat_region 269138 269203 . ? . description=trf scaffold_37 . biological_region 276821 276826 0.999 - . logic_name=eponine scaffold_37 . biological_region 277005 277010 0.999 - . logic_name=eponine scaffold_37 . repeat_region 277070 277472 . ? . description=dust scaffold_37 . biological_region 277649 277650 0.999 + . logic_name=eponine scaffold_37 . biological_region 281050 281051 0.999 - . logic_name=eponine scaffold_37 . biological_region 281102 281107 0.999 - . logic_name=eponine scaffold_37 . biological_region 281143 281144 0.999 + . logic_name=eponine scaffold_37 . biological_region 281180 281180 0.999 + . logic_name=eponine scaffold_37 . biological_region 281204 281210 0.999 - . logic_name=eponine scaffold_37 . biological_region 281239 281243 0.999 + . logic_name=eponine scaffold_37 . biological_region 281256 281259 0.999 - . logic_name=eponine scaffold_37 . biological_region 281261 281264 0.999 + . logic_name=eponine scaffold_37 . repeat_region 282556 283202 . ? . description=dust scaffold_37 ensembl protein_coding_gene 278367 278759 . - . ID=Phyra48027;biotype=protein_coding;external_name=gwEuk.37.20.1;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 278367 278759 . - . ID=Phyra48027;Parent=Phyra48027;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 278367 278759 . - 0 ID=Phyra48027;Parent=Phyra48027;rank=1 scaffold_37 . exon 278367 278759 . - . ID=Phyra48027.1;Parent=Phyra48027;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 279578 280895 . - . ID=Phyra79139;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000060;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 279578 280895 . - . ID=Phyra79139;Parent=Phyra79139;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 279578 279595 . - 0 ID=Phyra79139;Parent=Phyra79139;rank=4 scaffold_37 . exon 279578 279595 . - . ID=Phyra79139.4;Parent=Phyra79139;constitutive=1;rank=4 scaffold_37 . CDS 279618 279827 . - 0 ID=Phyra79139;Parent=Phyra79139;rank=3 scaffold_37 . exon 279618 279827 . - . ID=Phyra79139.3;Parent=Phyra79139;constitutive=1;rank=3 scaffold_37 . CDS 279870 280050 . - 0 ID=Phyra79139;Parent=Phyra79139;rank=2 scaffold_37 . exon 279870 280050 . - . ID=Phyra79139.2;Parent=Phyra79139;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 280123 280895 . - 0 ID=Phyra79139;Parent=Phyra79139;rank=1 scaffold_37 . exon 280123 280895 . - . ID=Phyra79139.1;Parent=Phyra79139;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . repeat_region 285839 285950 . ? . description=trf scaffold_37 . repeat_region 285896 286199 . ? . description=trf scaffold_37 . repeat_region 286021 286091 . ? . description=trf scaffold_37 . repeat_region 286094 286214 . ? . description=trf scaffold_37 . repeat_region 286172 286231 . ? . description=trf scaffold_37 . repeat_region 286252 286319 . ? . description=trf scaffold_37 . repeat_region 287950 288450 . ? . description=trf scaffold_37 ensembl protein_coding_gene 285053 286398 . + . ID=Phyra79140;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000061;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 285053 286398 . + . ID=Phyra79140;Parent=Phyra79140;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 285053 285593 . + 0 ID=Phyra79140;Parent=Phyra79140;rank=1 scaffold_37 . exon 285053 285593 . + . ID=Phyra79140.1;Parent=Phyra79140;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 285665 286398 . + 0 ID=Phyra79140;Parent=Phyra79140;rank=2 scaffold_37 . exon 285665 286398 . + . ID=Phyra79140.2;Parent=Phyra79140;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . biological_region 295361 295367 0.999 + . logic_name=eponine scaffold_37 . biological_region 295485 295488 0.999 - . logic_name=eponine scaffold_37 . repeat_region 295762 295888 . ? . description=dust scaffold_37 ensembl protein_coding_gene 300928 303234 . - . ID=Phyra48036;biotype=protein_coding;external_name=gwEuk.37.29.1;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 300928 303234 . - . ID=Phyra48036;Parent=Phyra48036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 300928 301099 . - 0 ID=Phyra48036;Parent=Phyra48036;rank=3 scaffold_37 . exon 300928 301099 . - . ID=Phyra48036.3;Parent=Phyra48036;constitutive=1;ensembl_phase=2;rank=3 scaffold_37 . CDS 302693 302852 . - 0 ID=Phyra48036;Parent=Phyra48036;rank=2 scaffold_37 . exon 302693 302852 . - . ID=Phyra48036.2;Parent=Phyra48036;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_37 . CDS 302925 303234 . - 0 ID=Phyra48036;Parent=Phyra48036;rank=1 scaffold_37 . exon 302925 303234 . - . ID=Phyra48036.1;Parent=Phyra48036;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 ensembl protein_coding_gene 295290 296510 . + . ID=Phyra79141;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000062;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 295290 296510 . + . ID=Phyra79141;Parent=Phyra79141;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 295290 296510 . + 0 ID=Phyra79141;Parent=Phyra79141;rank=1 scaffold_37 . exon 295290 296510 . + . ID=Phyra79141.1;Parent=Phyra79141;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 296755 299232 . + . ID=Phyra79142;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000063;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 296755 299232 . + . ID=Phyra79142;Parent=Phyra79142;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 296755 299232 . + 0 ID=Phyra79142;Parent=Phyra79142;rank=1 scaffold_37 . exon 296755 299232 . + . ID=Phyra79142.1;Parent=Phyra79142;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 299672 300791 . + . ID=Phyra79143;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000064;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 299672 300791 . + . ID=Phyra79143;Parent=Phyra79143;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 299672 299720 . + 0 ID=Phyra79143;Parent=Phyra79143;rank=1 scaffold_37 . exon 299672 299720 . + . ID=Phyra79143.1;Parent=Phyra79143;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 299785 300791 . + 0 ID=Phyra79143;Parent=Phyra79143;rank=2 scaffold_37 . exon 299785 300791 . + . ID=Phyra79143.2;Parent=Phyra79143;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . repeat_region 306761 306803 . ? . description=trf scaffold_37 . repeat_region 306771 306810 . ? . description=trf scaffold_37 . repeat_region 311818 311857 . ? . description=trf scaffold_37 . repeat_region 312077 312126 . ? . description=trf scaffold_37 ensembl protein_coding_gene 305866 310420 . + . ID=Phyra79146;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000067;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 305866 310420 . + . ID=Phyra79146;Parent=Phyra79146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 305866 306287 . + 0 ID=Phyra79146;Parent=Phyra79146;rank=1 scaffold_37 . exon 305866 306287 . + . ID=Phyra79146.1;Parent=Phyra79146;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . CDS 306337 306650 . + 0 ID=Phyra79146;Parent=Phyra79146;rank=2 scaffold_37 . exon 306337 306650 . + . ID=Phyra79146.2;Parent=Phyra79146;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 306683 307933 . + 0 ID=Phyra79146;Parent=Phyra79146;rank=3 scaffold_37 . exon 306683 307933 . + . ID=Phyra79146.3;Parent=Phyra79146;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_37 . CDS 307958 308089 . + 0 ID=Phyra79146;Parent=Phyra79146;rank=4 scaffold_37 . exon 307958 308089 . + . ID=Phyra79146.4;Parent=Phyra79146;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_37 . CDS 308378 308502 . + 0 ID=Phyra79146;Parent=Phyra79146;rank=5 scaffold_37 . exon 308378 308502 . + . ID=Phyra79146.5;Parent=Phyra79146;constitutive=1;ensembl_phase=1;rank=5 scaffold_37 . CDS 308697 309013 . + 0 ID=Phyra79146;Parent=Phyra79146;rank=6 scaffold_37 . exon 308697 309013 . + . ID=Phyra79146.6;Parent=Phyra79146;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_37 . CDS 309251 309763 . + 0 ID=Phyra79146;Parent=Phyra79146;rank=7 scaffold_37 . exon 309251 309763 . + . ID=Phyra79146.7;Parent=Phyra79146;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_37 . CDS 309945 310171 . + 0 ID=Phyra79146;Parent=Phyra79146;rank=8 scaffold_37 . exon 309945 310171 . + . ID=Phyra79146.8;Parent=Phyra79146;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_37 . CDS 310249 310263 . + 0 ID=Phyra79146;Parent=Phyra79146;rank=9 scaffold_37 . exon 310249 310263 . + . ID=Phyra79146.9;Parent=Phyra79146;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_37 . CDS 310311 310420 . + 0 ID=Phyra79146;Parent=Phyra79146;rank=10 scaffold_37 . exon 310311 310420 . + . ID=Phyra79146.10;Parent=Phyra79146;constitutive=1;ensembl_phase=1;rank=10 scaffold_37 . repeat_region 314606 314618 . ? . description=dust scaffold_37 . repeat_region 316897 316914 . ? . description=dust scaffold_37 . repeat_region 317821 317829 . ? . description=dust scaffold_37 . repeat_region 318335 318342 . ? . description=dust scaffold_37 . repeat_region 318356 318367 . ? . description=dust scaffold_37 . repeat_region 321315 321331 . ? . description=dust scaffold_37 . repeat_region 321980 321988 . ? . description=dust scaffold_37 ensembl pseudogenic_tRNA 321211 321281 . + . ID=EPrPRAG00000000003;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_37 ensembl transcript 321211 321281 . + . ID=EPrPRAT00000000003;Parent=EPrPRAG00000000003;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_37 . exon 321211 321281 . + . ID=EPrPRAE00000000003;Parent=EPrPRAT00000000003;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . repeat_region 324422 324470 . ? . description=trf scaffold_37 . repeat_region 331828 331858 . ? . description=trf scaffold_37 ensembl protein_coding_gene 333062 333481 . + . ID=Phyra79147;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000068;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 333062 333481 . + . ID=Phyra79147;Parent=Phyra79147;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 333062 333481 . + 0 ID=Phyra79147;Parent=Phyra79147;rank=1 scaffold_37 . exon 333062 333481 . + . ID=Phyra79147.1;Parent=Phyra79147;constitutive=1;rank=1 scaffold_37 . repeat_region 333488 334174 . ? . description=dust scaffold_37 . repeat_region 339430 339490 . ? . description=dust scaffold_37 . biological_region 343052 343057 0.999 - . logic_name=eponine scaffold_37 ensembl protein_coding_gene 334468 335646 . + . ID=Phyra79148;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000069;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 334468 335646 . + . ID=Phyra79148;Parent=Phyra79148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 334468 334863 . + 0 ID=Phyra79148;Parent=Phyra79148;rank=1 scaffold_37 . exon 334468 334863 . + . ID=Phyra79148.1;Parent=Phyra79148;constitutive=1;rank=1 scaffold_37 . CDS 335401 335646 . + 0 ID=Phyra79148;Parent=Phyra79148;rank=2 scaffold_37 . exon 335401 335646 . + . ID=Phyra79148.2;Parent=Phyra79148;constitutive=1;rank=2 scaffold_37 ensembl protein_coding_gene 339409 341441 . - . ID=Phyra79152;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000073;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 339409 341441 . - . ID=Phyra79152;Parent=Phyra79152;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 339409 339636 . - 0 ID=Phyra79152;Parent=Phyra79152;rank=7 scaffold_37 . exon 339409 339636 . - . ID=Phyra79152.7;Parent=Phyra79152;constitutive=1;rank=7 scaffold_37 . CDS 339705 339762 . - 0 ID=Phyra79152;Parent=Phyra79152;rank=6 scaffold_37 . exon 339705 339762 . - . ID=Phyra79152.6;Parent=Phyra79152;constitutive=1;ensembl_phase=2;rank=6 scaffold_37 . CDS 339831 340014 . - 0 ID=Phyra79152;Parent=Phyra79152;rank=5 scaffold_37 . exon 339831 340014 . - . ID=Phyra79152.5;Parent=Phyra79152;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_37 . CDS 340085 340133 . - 0 ID=Phyra79152;Parent=Phyra79152;rank=4 scaffold_37 . exon 340085 340133 . - . ID=Phyra79152.4;Parent=Phyra79152;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_37 . CDS 340203 340506 . - 0 ID=Phyra79152;Parent=Phyra79152;rank=3 scaffold_37 . exon 340203 340506 . - . ID=Phyra79152.3;Parent=Phyra79152;constitutive=1;ensembl_phase=2;rank=3 scaffold_37 . CDS 340580 341088 . - 0 ID=Phyra79152;Parent=Phyra79152;rank=2 scaffold_37 . exon 340580 341088 . - . ID=Phyra79152.2;Parent=Phyra79152;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_37 . CDS 341160 341441 . - 0 ID=Phyra79152;Parent=Phyra79152;rank=1 scaffold_37 . exon 341160 341441 . - . ID=Phyra79152.1;Parent=Phyra79152;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 341903 342484 . + . ID=Phyra79153;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000074;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 341903 342484 . + . ID=Phyra79153;Parent=Phyra79153;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 341903 342484 . + 0 ID=Phyra79153;Parent=Phyra79153;rank=1 scaffold_37 . exon 341903 342484 . + . ID=Phyra79153.1;Parent=Phyra79153;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 343197 346068 . + . ID=Phyra79154;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000075;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 343197 346068 . + . ID=Phyra79154;Parent=Phyra79154;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 343197 343586 . + 0 ID=Phyra79154;Parent=Phyra79154;rank=1 scaffold_37 . exon 343197 343586 . + . ID=Phyra79154.1;Parent=Phyra79154;constitutive=1;rank=1 scaffold_37 . CDS 343664 343933 . + 0 ID=Phyra79154;Parent=Phyra79154;rank=2 scaffold_37 . exon 343664 343933 . + . ID=Phyra79154.2;Parent=Phyra79154;constitutive=1;rank=2 scaffold_37 . CDS 344005 346068 . + 0 ID=Phyra79154;Parent=Phyra79154;rank=3 scaffold_37 ensembl protein_coding_gene 335723 338550 . - . ID=Phyra95303;biotype=protein_coding;external_name=C_scaffold_37000016;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 335723 338550 . - . ID=Phyra95303;Parent=Phyra95303;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 335723 335743 . - 0 ID=Phyra95303;Parent=Phyra95303;rank=6 scaffold_37 . exon 335723 335743 . - . ID=Phyra95303.6;Parent=Phyra95303;constitutive=1;rank=6 scaffold_37 . CDS 335766 336052 . - 0 ID=Phyra95303;Parent=Phyra95303;rank=5 scaffold_37 . exon 335766 336052 . - . ID=Phyra95303.5;Parent=Phyra95303;constitutive=1;ensembl_phase=1;rank=5 scaffold_37 . CDS 336140 336371 . - 0 ID=Phyra95303;Parent=Phyra95303;rank=4 scaffold_37 . exon 336140 336371 . - . ID=Phyra95303.4;Parent=Phyra95303;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_37 . CDS 336440 336508 . - 0 ID=Phyra95303;Parent=Phyra95303;rank=3 scaffold_37 . exon 336440 336508 . - . ID=Phyra95303.3;Parent=Phyra95303;constitutive=1;rank=3 scaffold_37 . CDS 336557 336710 . - 0 ID=Phyra95303;Parent=Phyra95303;rank=2 scaffold_37 . exon 336557 336710 . - . ID=Phyra95303.2;Parent=Phyra95303;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 336884 338550 . - 0 ID=Phyra95303;Parent=Phyra95303;rank=1 scaffold_37 . exon 336884 338550 . - . ID=Phyra95303.1;Parent=Phyra95303;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 ensembl protein_coding_gene 338828 339262 . + . ID=Phyra95304;biotype=protein_coding;external_name=C_scaffold_37000017;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 338828 339262 . + . ID=Phyra95304;Parent=Phyra95304;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 338828 339043 . + 0 ID=Phyra95304;Parent=Phyra95304;rank=1 scaffold_37 . exon 338828 339043 . + . ID=Phyra95304.1;Parent=Phyra95304;constitutive=1;rank=1 scaffold_37 . CDS 339104 339262 . + 0 ID=Phyra95304;Parent=Phyra95304;rank=2 scaffold_37 . exon 339104 339262 . + . ID=Phyra95304.2;Parent=Phyra95304;constitutive=1;rank=2 scaffold_37 . repeat_region 352162 352191 . ? . description=trf scaffold_37 ensembl protein_coding_gene 346593 347852 . + . ID=Phyra71685;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_37000007;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 346593 347852 . + . ID=Phyra71685;Parent=Phyra71685;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 346593 347852 . + 0 ID=Phyra71685;Parent=Phyra71685;rank=1 scaffold_37 . exon 346593 347852 . + . ID=Phyra71685.1;Parent=Phyra71685;constitutive=1;rank=1 scaffold_37 . exon 344005 346068 . + . ID=Phyra79154.3;Parent=Phyra79154;constitutive=1;rank=3 scaffold_37 ensembl protein_coding_gene 348063 349255 . + . ID=Phyra79156;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000077;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 348063 349255 . + . ID=Phyra79156;Parent=Phyra79156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 348063 349104 . + 0 ID=Phyra79156;Parent=Phyra79156;rank=1 scaffold_37 . exon 348063 349104 . + . ID=Phyra79156.1;Parent=Phyra79156;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 349179 349255 . + 0 ID=Phyra79156;Parent=Phyra79156;rank=2 scaffold_37 . exon 349179 349255 . + . ID=Phyra79156.2;Parent=Phyra79156;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 ensembl protein_coding_gene 350795 352308 . - . ID=Phyra79157;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000078;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 350795 352308 . - . ID=Phyra79157;Parent=Phyra79157;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 350795 350971 . - 0 ID=Phyra79157;Parent=Phyra79157;rank=4 scaffold_37 . exon 350795 350971 . - . ID=Phyra79157.4;Parent=Phyra79157;constitutive=1;rank=4 scaffold_37 . CDS 351074 351427 . - 0 ID=Phyra79157;Parent=Phyra79157;rank=3 scaffold_37 . exon 351074 351427 . - . ID=Phyra79157.3;Parent=Phyra79157;constitutive=1;rank=3 scaffold_37 . CDS 351494 351593 . - 0 ID=Phyra79157;Parent=Phyra79157;rank=2 scaffold_37 . exon 351494 351593 . - . ID=Phyra79157.2;Parent=Phyra79157;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 351728 352308 . - 0 ID=Phyra79157;Parent=Phyra79157;rank=1 scaffold_37 . exon 351728 352308 . - . ID=Phyra79157.1;Parent=Phyra79157;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 ensembl protein_coding_gene 353448 354356 . + . ID=Phyra79158;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000079;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 353448 354356 . + . ID=Phyra79158;Parent=Phyra79158;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 353448 353859 . + 0 ID=Phyra79158;Parent=Phyra79158;rank=1 scaffold_37 . exon 353448 353859 . + . ID=Phyra79158.1;Parent=Phyra79158;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 353927 354093 . + 0 ID=Phyra79158;Parent=Phyra79158;rank=2 scaffold_37 . CDS 354171 354356 . + 0 ID=Phyra79158;Parent=Phyra79158;rank=3 scaffold_37 . biological_region 356300 356305 0.999 + . logic_name=eponine scaffold_37 . biological_region 356303 356303 0.999 - . logic_name=eponine scaffold_37 . biological_region 356349 356355 0.999 - . logic_name=eponine scaffold_37 . biological_region 356356 356361 0.999 + . logic_name=eponine scaffold_37 . biological_region 356518 356521 0.999 + . logic_name=eponine scaffold_37 . biological_region 356615 356621 0.999 - . logic_name=eponine scaffold_37 . biological_region 356633 356636 0.999 + . logic_name=eponine scaffold_37 . biological_region 360170 360175 0.999 + . logic_name=eponine scaffold_37 ensembl protein_coding_gene 357112 357732 . + . ID=Phyra48054;biotype=protein_coding;external_name=gwEuk.37.47.1;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 357112 357732 . + . ID=Phyra48054;Parent=Phyra48054;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 357112 357153 . + 0 ID=Phyra48054;Parent=Phyra48054;rank=1 scaffold_37 . exon 357112 357153 . + . ID=Phyra48054.1;Parent=Phyra48054;constitutive=1;rank=1 scaffold_37 . CDS 357222 357545 . + 0 ID=Phyra48054;Parent=Phyra48054;rank=2 scaffold_37 . exon 357222 357545 . + . ID=Phyra48054.2;Parent=Phyra48054;constitutive=1;rank=2 scaffold_37 . CDS 357616 357732 . + 0 ID=Phyra48054;Parent=Phyra48054;rank=3 scaffold_37 . exon 357616 357732 . + . ID=Phyra48054.3;Parent=Phyra48054;constitutive=1;rank=3 scaffold_37 . exon 353927 354093 . + . ID=Phyra79158.2;Parent=Phyra79158;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . exon 354171 354356 . + . ID=Phyra79158.3;Parent=Phyra79158;constitutive=1;rank=3 scaffold_37 ensembl protein_coding_gene 354588 356156 . - . ID=Phyra79159;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000080;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 354588 356156 . - . ID=Phyra79159;Parent=Phyra79159;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 354588 355291 . - 0 ID=Phyra79159;Parent=Phyra79159;rank=4 scaffold_37 . exon 354588 355291 . - . ID=Phyra79159.4;Parent=Phyra79159;constitutive=1;ensembl_phase=1;rank=4 scaffold_37 . CDS 355367 355457 . - 0 ID=Phyra79159;Parent=Phyra79159;rank=3 scaffold_37 . exon 355367 355457 . - . ID=Phyra79159.3;Parent=Phyra79159;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_37 . CDS 355523 355837 . - 0 ID=Phyra79159;Parent=Phyra79159;rank=2 scaffold_37 . exon 355523 355837 . - . ID=Phyra79159.2;Parent=Phyra79159;constitutive=1;rank=2 scaffold_37 . CDS 355908 356156 . - 0 ID=Phyra79159;Parent=Phyra79159;rank=1 scaffold_37 . exon 355908 356156 . - . ID=Phyra79159.1;Parent=Phyra79159;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 358520 360332 . - . ID=Phyra79161;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000082;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 358520 360332 . - . ID=Phyra79161;Parent=Phyra79161;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 358520 359074 . - 0 ID=Phyra79161;Parent=Phyra79161;rank=4 scaffold_37 . exon 358520 359074 . - . ID=Phyra79161.4;Parent=Phyra79161;constitutive=1;rank=4 scaffold_37 . CDS 359157 359602 . - 0 ID=Phyra79161;Parent=Phyra79161;rank=3 scaffold_37 . exon 359157 359602 . - . ID=Phyra79161.3;Parent=Phyra79161;constitutive=1;ensembl_phase=1;rank=3 scaffold_37 . CDS 359674 359728 . - 0 ID=Phyra79161;Parent=Phyra79161;rank=2 scaffold_37 . exon 359674 359728 . - . ID=Phyra79161.2;Parent=Phyra79161;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_37 . CDS 359790 360332 . - 0 ID=Phyra79161;Parent=Phyra79161;rank=1 scaffold_37 . exon 359790 360332 . - . ID=Phyra79161.1;Parent=Phyra79161;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 360462 362547 . - . ID=Phyra79162;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000083;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 360462 362547 . - . ID=Phyra79162;Parent=Phyra79162;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 360462 360655 . - 0 ID=Phyra79162;Parent=Phyra79162;rank=5 scaffold_37 . exon 360462 360655 . - . ID=Phyra79162.5;Parent=Phyra79162;constitutive=1;ensembl_phase=1;rank=5 scaffold_37 . CDS 360683 360873 . - 0 ID=Phyra79162;Parent=Phyra79162;rank=4 scaffold_37 . exon 360683 360873 . - . ID=Phyra79162.4;Parent=Phyra79162;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_37 . CDS 360979 361406 . - 0 ID=Phyra79162;Parent=Phyra79162;rank=3 scaffold_37 . exon 360979 361406 . - . ID=Phyra79162.3;Parent=Phyra79162;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_37 . CDS 361668 362010 . - 0 ID=Phyra79162;Parent=Phyra79162;rank=2 scaffold_37 . exon 361668 362010 . - . ID=Phyra79162.2;Parent=Phyra79162;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 362090 362547 . - 0 ID=Phyra79162;Parent=Phyra79162;rank=1 scaffold_37 . exon 362090 362547 . - . ID=Phyra79162.1;Parent=Phyra79162;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . repeat_region 367639 367714 . ? . description=trf scaffold_37 . repeat_region 367982 367989 . ? . description=dust scaffold_37 . repeat_region 369795 369802 . ? . description=dust scaffold_37 . repeat_region 370110 370126 . ? . description=dust scaffold_37 . repeat_region 370136 370185 . ? . description=dust scaffold_37 . repeat_region 372580 372603 . ? . description=trf scaffold_37 . repeat_region 372580 372603 . ? . description=dust scaffold_37 . biological_region 380890 380890 0.999 - . logic_name=eponine scaffold_37 ensembl protein_coding_gene 376998 377942 . - . ID=Phyra79163;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000084;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 376998 377942 . - . ID=Phyra79163;Parent=Phyra79163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 376998 377942 . - 0 ID=Phyra79163;Parent=Phyra79163;rank=1 scaffold_37 . exon 376998 377942 . - . ID=Phyra79163.1;Parent=Phyra79163;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 378117 379105 . + . ID=Phyra79164;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000085;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 378117 379105 . + . ID=Phyra79164;Parent=Phyra79164;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 378117 378583 . + 0 ID=Phyra79164;Parent=Phyra79164;rank=1 scaffold_37 . exon 378117 378583 . + . ID=Phyra79164.1;Parent=Phyra79164;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . CDS 378622 378647 . + 0 ID=Phyra79164;Parent=Phyra79164;rank=2 scaffold_37 . exon 378622 378647 . + . ID=Phyra79164.2;Parent=Phyra79164;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 378690 379105 . + 0 ID=Phyra79164;Parent=Phyra79164;rank=3 scaffold_37 . exon 378690 379105 . + . ID=Phyra79164.3;Parent=Phyra79164;constitutive=1;ensembl_phase=1;rank=3 scaffold_37 ensembl protein_coding_gene 379222 380151 . - . ID=Phyra79165;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000086;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 379222 380151 . - . ID=Phyra79165;Parent=Phyra79165;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 379222 380151 . - 0 ID=Phyra79165;Parent=Phyra79165;rank=1 scaffold_37 . exon 379222 380151 . - . ID=Phyra79165.1;Parent=Phyra79165;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 382115 383199 . + . ID=Phyra79167;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000088;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 382115 383199 . + . ID=Phyra79167;Parent=Phyra79167;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 382115 382309 . + 0 ID=Phyra79167;Parent=Phyra79167;rank=1 scaffold_37 . exon 382115 382309 . + . ID=Phyra79167.1;Parent=Phyra79167;constitutive=1;rank=1 scaffold_37 . CDS 382353 383171 . + 0 ID=Phyra79167;Parent=Phyra79167;rank=2 scaffold_37 . exon 382353 383171 . + . ID=Phyra79167.2;Parent=Phyra79167;constitutive=1;rank=2 scaffold_37 . CDS 383191 383199 . + 0 ID=Phyra79167;Parent=Phyra79167;rank=3 scaffold_37 ensembl protein_coding_gene 380280 381265 . - . ID=Phyra95311;biotype=protein_coding;external_name=C_scaffold_37000024;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 380280 381265 . - . ID=Phyra95311;Parent=Phyra95311;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 380280 380672 . - 0 ID=Phyra95311;Parent=Phyra95311;rank=3 scaffold_37 . exon 380280 380672 . - . ID=Phyra95311.3;Parent=Phyra95311;constitutive=1;rank=3 scaffold_37 . CDS 380786 380987 . - 0 ID=Phyra95311;Parent=Phyra95311;rank=2 scaffold_37 . exon 380786 380987 . - . ID=Phyra95311.2;Parent=Phyra95311;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 381027 381265 . - 0 ID=Phyra95311;Parent=Phyra95311;rank=1 scaffold_37 . exon 381027 381265 . - . ID=Phyra95311.1;Parent=Phyra95311;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . repeat_region 392035 392120 . ? . description=trf scaffold_37 . exon 383191 383199 . + . ID=Phyra79167.3;Parent=Phyra79167;constitutive=1;rank=3 scaffold_37 ensembl protein_coding_gene 391611 393788 . - . ID=Phyra79168;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000089;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 391611 393788 . - . ID=Phyra79168;Parent=Phyra79168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 391611 391618 . - 0 ID=Phyra79168;Parent=Phyra79168;rank=7 scaffold_37 . exon 391611 391618 . - . ID=Phyra79168.7;Parent=Phyra79168;constitutive=1;ensembl_phase=1;rank=7 scaffold_37 . CDS 391653 392066 . - 0 ID=Phyra79168;Parent=Phyra79168;rank=6 scaffold_37 . exon 391653 392066 . - . ID=Phyra79168.6;Parent=Phyra79168;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_37 . CDS 392190 392704 . - 0 ID=Phyra79168;Parent=Phyra79168;rank=5 scaffold_37 . exon 392190 392704 . - . ID=Phyra79168.5;Parent=Phyra79168;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_37 . CDS 392792 393183 . - 0 ID=Phyra79168;Parent=Phyra79168;rank=4 scaffold_37 . exon 392792 393183 . - . ID=Phyra79168.4;Parent=Phyra79168;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_37 . CDS 393245 393292 . - 0 ID=Phyra79168;Parent=Phyra79168;rank=3 scaffold_37 . CDS 393363 393622 . - 0 ID=Phyra79168;Parent=Phyra79168;rank=2 scaffold_37 . CDS 393761 393788 . - 0 ID=Phyra79168;Parent=Phyra79168;rank=1 scaffold_37 . exon 393245 393292 . - . ID=Phyra79168.3;Parent=Phyra79168;constitutive=1;rank=3 scaffold_37 . exon 393363 393622 . - . ID=Phyra79168.2;Parent=Phyra79168;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . exon 393761 393788 . - . ID=Phyra79168.1;Parent=Phyra79168;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 ensembl protein_coding_gene 397695 404688 . - . ID=Phyra79169;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000090;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 397695 404688 . - . ID=Phyra79169;Parent=Phyra79169;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 397695 398008 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=18 scaffold_37 . exon 397695 398008 . - . ID=Phyra79169.18;Parent=Phyra79169;constitutive=1;ensembl_phase=1;rank=18 scaffold_37 . CDS 398072 398135 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=17 scaffold_37 . exon 398072 398135 . - . ID=Phyra79169.17;Parent=Phyra79169;constitutive=1;ensembl_end_phase=1;rank=17 scaffold_37 . CDS 398209 398297 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=16 scaffold_37 . exon 398209 398297 . - . ID=Phyra79169.16;Parent=Phyra79169;constitutive=1;ensembl_phase=1;rank=16 scaffold_37 . CDS 398378 398481 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=15 scaffold_37 . exon 398378 398481 . - . ID=Phyra79169.15;Parent=Phyra79169;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=15 scaffold_37 . CDS 398550 398623 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=14 scaffold_37 . exon 398550 398623 . - . ID=Phyra79169.14;Parent=Phyra79169;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_37 . CDS 398713 398850 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=13 scaffold_37 . exon 398713 398850 . - . ID=Phyra79169.13;Parent=Phyra79169;constitutive=1;rank=13 scaffold_37 . CDS 398929 398982 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=12 scaffold_37 . exon 398929 398982 . - . ID=Phyra79169.12;Parent=Phyra79169;constitutive=1;rank=12 scaffold_37 . CDS 399051 399124 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=11 scaffold_37 . exon 399051 399124 . - . ID=Phyra79169.11;Parent=Phyra79169;constitutive=1;ensembl_phase=1;rank=11 scaffold_37 . CDS 399191 399372 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=10 scaffold_37 . exon 399191 399372 . - . ID=Phyra79169.10;Parent=Phyra79169;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_37 . CDS 399441 399494 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=9 scaffold_37 . exon 399441 399494 . - . ID=Phyra79169.9;Parent=Phyra79169;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_37 . CDS 399559 399676 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=8 scaffold_37 . exon 399559 399676 . - . ID=Phyra79169.8;Parent=Phyra79169;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_37 . CDS 399758 399945 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=7 scaffold_37 . exon 399758 399945 . - . ID=Phyra79169.7;Parent=Phyra79169;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_37 . CDS 400101 400175 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=6 scaffold_37 . exon 400101 400175 . - . ID=Phyra79169.6;Parent=Phyra79169;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_37 . CDS 400251 400495 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=5 scaffold_37 . exon 400251 400495 . - . ID=Phyra79169.5;Parent=Phyra79169;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_37 . CDS 400551 400666 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=4 scaffold_37 . exon 400551 400666 . - . ID=Phyra79169.4;Parent=Phyra79169;constitutive=1;ensembl_phase=1;rank=4 scaffold_37 . CDS 400740 402466 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=3 scaffold_37 . exon 400740 402466 . - . ID=Phyra79169.3;Parent=Phyra79169;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_37 . CDS 402574 402629 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=2 scaffold_37 . exon 402574 402629 . - . ID=Phyra79169.2;Parent=Phyra79169;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_37 . CDS 402868 404688 . - 0 ID=Phyra79169;Parent=Phyra79169;rank=1 scaffold_37 . biological_region 407577 407580 0.999 - . logic_name=eponine scaffold_37 . biological_region 409278 409281 0.999 + . logic_name=eponine scaffold_37 . biological_region 409394 409396 0.999 - . logic_name=eponine scaffold_37 . exon 402868 404688 . - . ID=Phyra79169.1;Parent=Phyra79169;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 405205 406368 . + . ID=Phyra79170;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000091;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 405205 406368 . + . ID=Phyra79170;Parent=Phyra79170;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 405205 405235 . + 0 ID=Phyra79170;Parent=Phyra79170;rank=1 scaffold_37 . exon 405205 405235 . + . ID=Phyra79170.1;Parent=Phyra79170;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 405263 405277 . + 0 ID=Phyra79170;Parent=Phyra79170;rank=2 scaffold_37 . exon 405263 405277 . + . ID=Phyra79170.2;Parent=Phyra79170;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 405323 405405 . + 0 ID=Phyra79170;Parent=Phyra79170;rank=3 scaffold_37 . exon 405323 405405 . + . ID=Phyra79170.3;Parent=Phyra79170;constitutive=1;ensembl_phase=1;rank=3 scaffold_37 . CDS 405479 405585 . + 0 ID=Phyra79170;Parent=Phyra79170;rank=4 scaffold_37 . exon 405479 405585 . + . ID=Phyra79170.4;Parent=Phyra79170;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_37 . CDS 405665 405752 . + 0 ID=Phyra79170;Parent=Phyra79170;rank=5 scaffold_37 . exon 405665 405752 . + . ID=Phyra79170.5;Parent=Phyra79170;constitutive=1;ensembl_phase=2;rank=5 scaffold_37 . CDS 405987 406073 . + 0 ID=Phyra79170;Parent=Phyra79170;rank=6 scaffold_37 . exon 405987 406073 . + . ID=Phyra79170.6;Parent=Phyra79170;constitutive=1;rank=6 scaffold_37 . CDS 406147 406368 . + 0 ID=Phyra79170;Parent=Phyra79170;rank=7 scaffold_37 . exon 406147 406368 . + . ID=Phyra79170.7;Parent=Phyra79170;constitutive=1;rank=7 scaffold_37 ensembl protein_coding_gene 406606 407865 . + . ID=Phyra79171;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000092;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 406606 407865 . + . ID=Phyra79171;Parent=Phyra79171;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 406606 406752 . + 0 ID=Phyra79171;Parent=Phyra79171;rank=1 scaffold_37 . exon 406606 406752 . + . ID=Phyra79171.1;Parent=Phyra79171;constitutive=1;rank=1 scaffold_37 . CDS 406935 407089 . + 0 ID=Phyra79171;Parent=Phyra79171;rank=2 scaffold_37 . exon 406935 407089 . + . ID=Phyra79171.2;Parent=Phyra79171;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_37 . CDS 407158 407539 . + 0 ID=Phyra79171;Parent=Phyra79171;rank=3 scaffold_37 . exon 407158 407539 . + . ID=Phyra79171.3;Parent=Phyra79171;constitutive=1;ensembl_phase=2;rank=3 scaffold_37 . CDS 407610 407666 . + 0 ID=Phyra79171;Parent=Phyra79171;rank=4 scaffold_37 . exon 407610 407666 . + . ID=Phyra79171.4;Parent=Phyra79171;constitutive=1;rank=4 scaffold_37 . CDS 407791 407865 . + 0 ID=Phyra79171;Parent=Phyra79171;rank=5 scaffold_37 . exon 407791 407865 . + . ID=Phyra79171.5;Parent=Phyra79171;constitutive=1;rank=5 scaffold_37 ensembl protein_coding_gene 408312 409790 . - . ID=Phyra79172;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000093;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 408312 409790 . - . ID=Phyra79172;Parent=Phyra79172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 408312 409790 . - 0 ID=Phyra79172;Parent=Phyra79172;rank=1 scaffold_37 . exon 408312 409790 . - . ID=Phyra79172.1;Parent=Phyra79172;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 411708 413291 . - . ID=Phyra79173;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000094;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 411708 413291 . - . ID=Phyra79173;Parent=Phyra79173;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 411708 413291 . - 0 ID=Phyra79173;Parent=Phyra79173;rank=1 scaffold_37 . exon 411708 413291 . - . ID=Phyra79173.1;Parent=Phyra79173;constitutive=1;rank=1 scaffold_37 . repeat_region 421045 421054 . ? . description=dust scaffold_37 ensembl protein_coding_gene 421738 424371 . + . ID=Phyra71686;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_37000008;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 421738 424371 . + . ID=Phyra71686;Parent=Phyra71686;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 421738 422788 . + 0 ID=Phyra71686;Parent=Phyra71686;rank=1 scaffold_37 . exon 421738 422788 . + . ID=Phyra71686.1;Parent=Phyra71686;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 422855 423105 . + 0 ID=Phyra71686;Parent=Phyra71686;rank=2 scaffold_37 . CDS 423172 424371 . + 0 ID=Phyra71686;Parent=Phyra71686;rank=3 scaffold_37 ensembl protein_coding_gene 414203 415639 . - . ID=Phyra79174;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000095;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 414203 415639 . - . ID=Phyra79174;Parent=Phyra79174;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 414203 415639 . - 0 ID=Phyra79174;Parent=Phyra79174;rank=1 scaffold_37 . exon 414203 415639 . - . ID=Phyra79174.1;Parent=Phyra79174;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 415949 417415 . - . ID=Phyra79175;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000096;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 415949 417415 . - . ID=Phyra79175;Parent=Phyra79175;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 415949 417415 . - 0 ID=Phyra79175;Parent=Phyra79175;rank=1 scaffold_37 . exon 415949 417415 . - . ID=Phyra79175.1;Parent=Phyra79175;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 418550 420913 . + . ID=Phyra79176;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000097;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 418550 420913 . + . ID=Phyra79176;Parent=Phyra79176;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 418550 418579 . + 0 ID=Phyra79176;Parent=Phyra79176;rank=1 scaffold_37 . exon 418550 418579 . + . ID=Phyra79176.1;Parent=Phyra79176;constitutive=1;rank=1 scaffold_37 . CDS 418647 419018 . + 0 ID=Phyra79176;Parent=Phyra79176;rank=2 scaffold_37 . exon 418647 419018 . + . ID=Phyra79176.2;Parent=Phyra79176;constitutive=1;rank=2 scaffold_37 . CDS 419087 419371 . + 0 ID=Phyra79176;Parent=Phyra79176;rank=3 scaffold_37 . exon 419087 419371 . + . ID=Phyra79176.3;Parent=Phyra79176;constitutive=1;rank=3 scaffold_37 . CDS 419449 419577 . + 0 ID=Phyra79176;Parent=Phyra79176;rank=4 scaffold_37 . exon 419449 419577 . + . ID=Phyra79176.4;Parent=Phyra79176;constitutive=1;rank=4 scaffold_37 . CDS 419653 420292 . + 0 ID=Phyra79176;Parent=Phyra79176;rank=5 scaffold_37 . exon 419653 420292 . + . ID=Phyra79176.5;Parent=Phyra79176;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_37 . CDS 420376 420815 . + 0 ID=Phyra79176;Parent=Phyra79176;rank=6 scaffold_37 . exon 420376 420815 . + . ID=Phyra79176.6;Parent=Phyra79176;constitutive=1;ensembl_phase=1;rank=6 scaffold_37 . CDS 420896 420913 . + 0 ID=Phyra79176;Parent=Phyra79176;rank=7 scaffold_37 . exon 420896 420913 . + . ID=Phyra79176.7;Parent=Phyra79176;constitutive=1;rank=7 scaffold_37 . repeat_region 422500 422519 . ? . description=trf scaffold_37 . biological_region 425357 425359 0.999 + . logic_name=eponine scaffold_37 . biological_region 425688 425689 0.999 - . logic_name=eponine scaffold_37 . biological_region 430556 430557 0.999 - . logic_name=eponine scaffold_37 . biological_region 430904 430908 0.999 - . logic_name=eponine scaffold_37 . biological_region 430959 430961 0.999 + . logic_name=eponine scaffold_37 . biological_region 431605 431607 0.999 + . logic_name=eponine scaffold_37 . exon 422855 423105 . + . ID=Phyra71686.2;Parent=Phyra71686;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . exon 423172 424371 . + . ID=Phyra71686.3;Parent=Phyra71686;constitutive=1;rank=3 scaffold_37 ensembl protein_coding_gene 425628 428503 . + . ID=Phyra79178;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000099;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 425628 428503 . + . ID=Phyra79178;Parent=Phyra79178;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 425628 425955 . + 0 ID=Phyra79178;Parent=Phyra79178;rank=1 scaffold_37 . exon 425628 425955 . + . ID=Phyra79178.1;Parent=Phyra79178;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 426021 426250 . + 0 ID=Phyra79178;Parent=Phyra79178;rank=2 scaffold_37 . exon 426021 426250 . + . ID=Phyra79178.2;Parent=Phyra79178;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 426410 426604 . + 0 ID=Phyra79178;Parent=Phyra79178;rank=3 scaffold_37 . exon 426410 426604 . + . ID=Phyra79178.3;Parent=Phyra79178;constitutive=1;rank=3 scaffold_37 . CDS 426692 427689 . + 0 ID=Phyra79178;Parent=Phyra79178;rank=4 scaffold_37 . exon 426692 427689 . + . ID=Phyra79178.4;Parent=Phyra79178;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_37 . CDS 427768 428503 . + 0 ID=Phyra79178;Parent=Phyra79178;rank=5 scaffold_37 . exon 427768 428503 . + . ID=Phyra79178.5;Parent=Phyra79178;constitutive=1;ensembl_phase=2;rank=5 scaffold_37 ensembl protein_coding_gene 428833 429663 . - . ID=Phyra79179;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000100;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 428833 429663 . - . ID=Phyra79179;Parent=Phyra79179;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 428833 429663 . - 0 ID=Phyra79179;Parent=Phyra79179;rank=1 scaffold_37 . exon 428833 429663 . - . ID=Phyra79179.1;Parent=Phyra79179;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 430419 431486 . + . ID=Phyra79180;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000101;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 430419 431486 . + . ID=Phyra79180;Parent=Phyra79180;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 430419 430530 . + 0 ID=Phyra79180;Parent=Phyra79180;rank=1 scaffold_37 . exon 430419 430530 . + . ID=Phyra79180.1;Parent=Phyra79180;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 430687 431486 . + 0 ID=Phyra79180;Parent=Phyra79180;rank=2 scaffold_37 . exon 430687 431486 . + . ID=Phyra79180.2;Parent=Phyra79180;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 ensembl protein_coding_gene 432030 434648 . - . ID=Phyra79181;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000102;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 432030 434648 . - . ID=Phyra79181;Parent=Phyra79181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 432030 434048 . - 0 ID=Phyra79181;Parent=Phyra79181;rank=3 scaffold_37 . exon 432030 434048 . - . ID=Phyra79181.3;Parent=Phyra79181;constitutive=1;rank=3 scaffold_37 . CDS 434242 434298 . - 0 ID=Phyra79181;Parent=Phyra79181;rank=2 scaffold_37 . CDS 434472 434648 . - 0 ID=Phyra79181;Parent=Phyra79181;rank=1 scaffold_37 . repeat_region 435257 435265 . ? . description=dust scaffold_37 . repeat_region 439809 439826 . ? . description=dust scaffold_37 . repeat_region 441414 441507 . ? . description=dust scaffold_37 ensembl pseudogenic_tRNA 441251 441332 . - . ID=EPrPRAG00000000143;biotype=tRNA_pseudogene;description=tRNA-Leu for anticodon AAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_37 ensembl transcript 441251 441332 . - . ID=EPrPRAT00000000143;Parent=EPrPRAG00000000143;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_37 . exon 441251 441332 . - . ID=EPrPRAE00000000143;Parent=EPrPRAT00000000143;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . exon 434242 434298 . - . ID=Phyra79181.2;Parent=Phyra79181;constitutive=1;rank=2 scaffold_37 . exon 434472 434648 . - . ID=Phyra79181.1;Parent=Phyra79181;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 437430 438350 . + . ID=Phyra79182;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_37000103;logic_name=jgi_phyra1 scaffold_37 ensembl transcript 437430 438350 . + . ID=Phyra79182;Parent=Phyra79182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_37 . CDS 437430 437475 . + 0 ID=Phyra79182;Parent=Phyra79182;rank=1 scaffold_37 . exon 437430 437475 . + . ID=Phyra79182.1;Parent=Phyra79182;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 437806 438350 . + 0 ID=Phyra79182;Parent=Phyra79182;rank=2 scaffold_37 . exon 437806 438350 . + . ID=Phyra79182.2;Parent=Phyra79182;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_38 1 442185 scaffold_38 . repeat_region 896 1088 . ? . description=trf scaffold_38 . repeat_region 1223 6023 . + . description=Polinton-1_PI scaffold_38 . repeat_region 1965 3632 . ? . description=dust scaffold_38 . repeat_region 6729 7073 . + . description=Polinton-1_PI scaffold_38 . repeat_region 6749 6757 . ? . description=dust scaffold_38 ensembl protein_coding_gene 13227 14390 . - . ID=Phyra79183;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000001;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 13227 14390 . - . ID=Phyra79183;Parent=Phyra79183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 13227 13232 . - 0 ID=Phyra79183;Parent=Phyra79183;rank=4 scaffold_38 . exon 13227 13232 . - . ID=Phyra79183.4;Parent=Phyra79183;constitutive=1;rank=4 scaffold_38 . CDS 13377 13867 . - 0 ID=Phyra79183;Parent=Phyra79183;rank=3 scaffold_38 . exon 13377 13867 . - . ID=Phyra79183.3;Parent=Phyra79183;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 13954 14184 . - 0 ID=Phyra79183;Parent=Phyra79183;rank=2 scaffold_38 . exon 13954 14184 . - . ID=Phyra79183.2;Parent=Phyra79183;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 14264 14390 . - 0 ID=Phyra79183;Parent=Phyra79183;rank=1 scaffold_38 . exon 14264 14390 . - . ID=Phyra79183.1;Parent=Phyra79183;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 15177 16211 . + . ID=Phyra79184;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000002;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 15177 16211 . + . ID=Phyra79184;Parent=Phyra79184;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 15177 16211 . + 0 ID=Phyra79184;Parent=Phyra79184;rank=1 scaffold_38 . exon 15177 16211 . + . ID=Phyra79184.1;Parent=Phyra79184;constitutive=1;rank=1 scaffold_38 . repeat_region 19856 29210 . ? . description=dust scaffold_38 ensembl protein_coding_gene 34556 36454 . + . ID=Phyra79185;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000003;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 34556 36454 . + . ID=Phyra79185;Parent=Phyra79185;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 34556 36454 . + 0 ID=Phyra79185;Parent=Phyra79185;rank=1 scaffold_38 . exon 34556 36454 . + . ID=Phyra79185.1;Parent=Phyra79185;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 38814 39185 . + . ID=Phyra79187;biotype=protein_coding;description=Elicitin-like protein RAL7AElicitin-like protein RAL7B [Source:UniProtKB/TrEMBL%3BAcc:Q2N0B1];external_name=fgenesh1_pg.C_scaffold_38000005;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 38814 39185 . + . ID=Phyra79187;Parent=Phyra79187;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 38814 39185 . + 0 ID=Phyra79187;Parent=Phyra79187;rank=1 scaffold_38 . exon 38814 39185 . + . ID=Phyra79187.1;Parent=Phyra79187;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 36593 37959 . - . ID=Phyra95313;biotype=protein_coding;external_name=C_scaffold_38000002;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 36593 37959 . - . ID=Phyra95313;Parent=Phyra95313;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 36593 36705 . - 0 ID=Phyra95313;Parent=Phyra95313;rank=5 scaffold_38 . exon 36593 36705 . - . ID=Phyra95313.5;Parent=Phyra95313;constitutive=1;ensembl_phase=1;rank=5 scaffold_38 . CDS 36739 36853 . - 0 ID=Phyra95313;Parent=Phyra95313;rank=4 scaffold_38 . exon 36739 36853 . - . ID=Phyra95313.4;Parent=Phyra95313;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_38 . CDS 36881 37224 . - 0 ID=Phyra95313;Parent=Phyra95313;rank=3 scaffold_38 . exon 36881 37224 . - . ID=Phyra95313.3;Parent=Phyra95313;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 37299 37821 . - 0 ID=Phyra95313;Parent=Phyra95313;rank=2 scaffold_38 . exon 37299 37821 . - . ID=Phyra95313.2;Parent=Phyra95313;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_38 . CDS 37888 37959 . - 0 ID=Phyra95313;Parent=Phyra95313;rank=1 scaffold_38 . exon 37888 37959 . - . ID=Phyra95313.1;Parent=Phyra95313;constitutive=1;rank=1 scaffold_38 . biological_region 41122 41123 0.999 + . logic_name=eponine scaffold_38 . biological_region 41170 41173 0.999 + . logic_name=eponine scaffold_38 . biological_region 46670 46673 0.999 - . logic_name=eponine scaffold_38 . biological_region 48164 48166 0.999 - . logic_name=eponine scaffold_38 ensembl protein_coding_gene 39500 40357 . - . ID=Phyra79188;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000006;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 39500 40357 . - . ID=Phyra79188;Parent=Phyra79188;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 39500 40357 . - 0 ID=Phyra79188;Parent=Phyra79188;rank=1 scaffold_38 . exon 39500 40357 . - . ID=Phyra79188.1;Parent=Phyra79188;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 40563 41372 . - . ID=Phyra79189;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000007;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 40563 41372 . - . ID=Phyra79189;Parent=Phyra79189;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 40563 41372 . - 0 ID=Phyra79189;Parent=Phyra79189;rank=1 scaffold_38 . exon 40563 41372 . - . ID=Phyra79189.1;Parent=Phyra79189;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 41718 43229 . - . ID=Phyra79190;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000008;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 41718 43229 . - . ID=Phyra79190;Parent=Phyra79190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 41718 43229 . - 0 ID=Phyra79190;Parent=Phyra79190;rank=1 scaffold_38 . exon 41718 43229 . - . ID=Phyra79190.1;Parent=Phyra79190;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 43580 44842 . + . ID=Phyra79191;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000009;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 43580 44842 . + . ID=Phyra79191;Parent=Phyra79191;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 43580 44842 . + 0 ID=Phyra79191;Parent=Phyra79191;rank=1 scaffold_38 . exon 43580 44842 . + . ID=Phyra79191.1;Parent=Phyra79191;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 45060 45764 . - . ID=Phyra79192;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000010;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 45060 45764 . - . ID=Phyra79192;Parent=Phyra79192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 45060 45764 . - 0 ID=Phyra79192;Parent=Phyra79192;rank=1 scaffold_38 . exon 45060 45764 . - . ID=Phyra79192.1;Parent=Phyra79192;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 45970 46713 . - . ID=Phyra79193;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000011;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 45970 46713 . - . ID=Phyra79193;Parent=Phyra79193;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 45970 46713 . - 0 ID=Phyra79193;Parent=Phyra79193;rank=1 scaffold_38 . exon 45970 46713 . - . ID=Phyra79193.1;Parent=Phyra79193;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 46944 51776 . + . ID=Phyra79194;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000012;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 46944 51776 . + . ID=Phyra79194;Parent=Phyra79194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 46944 46956 . + 0 ID=Phyra79194;Parent=Phyra79194;rank=1 scaffold_38 . exon 46944 46956 . + . ID=Phyra79194.1;Parent=Phyra79194;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 47045 47091 . + 0 ID=Phyra79194;Parent=Phyra79194;rank=2 scaffold_38 . exon 47045 47091 . + . ID=Phyra79194.2;Parent=Phyra79194;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 47193 47283 . + 0 ID=Phyra79194;Parent=Phyra79194;rank=3 scaffold_38 . exon 47193 47283 . + . ID=Phyra79194.3;Parent=Phyra79194;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_38 . CDS 47418 47604 . + 0 ID=Phyra79194;Parent=Phyra79194;rank=4 scaffold_38 . exon 47418 47604 . + . ID=Phyra79194.4;Parent=Phyra79194;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_38 . CDS 47945 51776 . + 0 ID=Phyra79194;Parent=Phyra79194;rank=5 scaffold_38 . exon 47945 51776 . + . ID=Phyra79194.5;Parent=Phyra79194;constitutive=1;ensembl_phase=2;rank=5 scaffold_38 . repeat_region 58178 58186 . ? . description=dust scaffold_38 . repeat_region 58492 58553 . ? . description=dust scaffold_38 . repeat_region 58494 58594 . ? . description=trf scaffold_38 . repeat_region 58556 58613 . ? . description=dust scaffold_38 . repeat_region 58563 58618 . ? . description=trf scaffold_38 ensembl protein_coding_gene 53654 54745 . - . ID=Phyra48198;biotype=protein_coding;external_name=gwEuk.38.84.1;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 53654 54745 . - . ID=Phyra48198;Parent=Phyra48198;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 53654 54304 . - 0 ID=Phyra48198;Parent=Phyra48198;rank=4 scaffold_38 . exon 53654 54304 . - . ID=Phyra48198.4;Parent=Phyra48198;constitutive=1;rank=4 scaffold_38 . CDS 54372 54437 . - 0 ID=Phyra48198;Parent=Phyra48198;rank=3 scaffold_38 . exon 54372 54437 . - . ID=Phyra48198.3;Parent=Phyra48198;constitutive=1;rank=3 scaffold_38 . CDS 54505 54580 . - 0 ID=Phyra48198;Parent=Phyra48198;rank=2 scaffold_38 . exon 54505 54580 . - . ID=Phyra48198.2;Parent=Phyra48198;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 54645 54745 . - 0 ID=Phyra48198;Parent=Phyra48198;rank=1 scaffold_38 . exon 54645 54745 . - . ID=Phyra48198.1;Parent=Phyra48198;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 ensembl protein_coding_gene 58422 60646 . + . ID=Phyra71687;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_38000001;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 58422 60646 . + . ID=Phyra71687;Parent=Phyra71687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 58422 58539 . + 0 ID=Phyra71687;Parent=Phyra71687;rank=1 scaffold_38 . exon 58422 58539 . + . ID=Phyra71687.1;Parent=Phyra71687;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 58642 59024 . + 0 ID=Phyra71687;Parent=Phyra71687;rank=2 scaffold_38 . exon 58642 59024 . + . ID=Phyra71687.2;Parent=Phyra71687;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 59633 60646 . + 0 ID=Phyra71687;Parent=Phyra71687;rank=3 scaffold_38 ensembl protein_coding_gene 55290 57989 . + . ID=Phyra79196;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000014;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 55290 57989 . + . ID=Phyra79196;Parent=Phyra79196;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 55290 55337 . + 0 ID=Phyra79196;Parent=Phyra79196;rank=1 scaffold_38 . exon 55290 55337 . + . ID=Phyra79196.1;Parent=Phyra79196;constitutive=1;rank=1 scaffold_38 . CDS 55415 55714 . + 0 ID=Phyra79196;Parent=Phyra79196;rank=2 scaffold_38 . exon 55415 55714 . + . ID=Phyra79196.2;Parent=Phyra79196;constitutive=1;rank=2 scaffold_38 . CDS 55791 56028 . + 0 ID=Phyra79196;Parent=Phyra79196;rank=3 scaffold_38 . exon 55791 56028 . + . ID=Phyra79196.3;Parent=Phyra79196;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_38 . CDS 56107 56267 . + 0 ID=Phyra79196;Parent=Phyra79196;rank=4 scaffold_38 . exon 56107 56267 . + . ID=Phyra79196.4;Parent=Phyra79196;constitutive=1;ensembl_phase=1;rank=4 scaffold_38 . CDS 56338 56422 . + 0 ID=Phyra79196;Parent=Phyra79196;rank=5 scaffold_38 . exon 56338 56422 . + . ID=Phyra79196.5;Parent=Phyra79196;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_38 . CDS 56659 57194 . + 0 ID=Phyra79196;Parent=Phyra79196;rank=6 scaffold_38 . exon 56659 57194 . + . ID=Phyra79196.6;Parent=Phyra79196;constitutive=1;ensembl_phase=1;rank=6 scaffold_38 . CDS 57272 57445 . + 0 ID=Phyra79196;Parent=Phyra79196;rank=7 scaffold_38 . exon 57272 57445 . + . ID=Phyra79196.7;Parent=Phyra79196;constitutive=1;rank=7 scaffold_38 . CDS 57514 57711 . + 0 ID=Phyra79196;Parent=Phyra79196;rank=8 scaffold_38 . exon 57514 57711 . + . ID=Phyra79196.8;Parent=Phyra79196;constitutive=1;rank=8 scaffold_38 . CDS 57786 57827 . + 0 ID=Phyra79196;Parent=Phyra79196;rank=9 scaffold_38 . exon 57786 57827 . + . ID=Phyra79196.9;Parent=Phyra79196;constitutive=1;rank=9 scaffold_38 . CDS 57906 57989 . + 0 ID=Phyra79196;Parent=Phyra79196;rank=10 scaffold_38 . exon 57906 57989 . + . ID=Phyra79196.10;Parent=Phyra79196;constitutive=1;rank=10 scaffold_38 . exon 59633 60646 . + . ID=Phyra71687.3;Parent=Phyra71687;constitutive=1;rank=3 scaffold_38 ensembl protein_coding_gene 66834 69993 . + . ID=Phyra79199;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000017;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 66834 69993 . + . ID=Phyra79199;Parent=Phyra79199;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 66834 68189 . + 0 ID=Phyra79199;Parent=Phyra79199;rank=1 scaffold_38 . exon 66834 68189 . + . ID=Phyra79199.1;Parent=Phyra79199;constitutive=1;rank=1 scaffold_38 . CDS 68284 68369 . + 0 ID=Phyra79199;Parent=Phyra79199;rank=2 scaffold_38 . exon 68284 68369 . + . ID=Phyra79199.2;Parent=Phyra79199;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_38 . CDS 68447 68531 . + 0 ID=Phyra79199;Parent=Phyra79199;rank=3 scaffold_38 . exon 68447 68531 . + . ID=Phyra79199.3;Parent=Phyra79199;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 68914 69993 . + 0 ID=Phyra79199;Parent=Phyra79199;rank=4 scaffold_38 ensembl protein_coding_gene 60918 63833 . - . ID=Phyra95316;biotype=protein_coding;external_name=C_scaffold_38000005;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 60918 63833 . - . ID=Phyra95316;Parent=Phyra95316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 60918 61855 . - 0 ID=Phyra95316;Parent=Phyra95316;rank=3 scaffold_38 . exon 60918 61855 . - . ID=Phyra95316.3;Parent=Phyra95316;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 61943 62192 . - 0 ID=Phyra95316;Parent=Phyra95316;rank=2 scaffold_38 . exon 61943 62192 . - . ID=Phyra95316.2;Parent=Phyra95316;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_38 . CDS 62223 63833 . - 0 ID=Phyra95316;Parent=Phyra95316;rank=1 scaffold_38 . exon 62223 63833 . - . ID=Phyra95316.1;Parent=Phyra95316;constitutive=1;rank=1 scaffold_38 . repeat_region 70232 70264 . ? . description=trf scaffold_38 . repeat_region 72393 72490 . ? . description=trf scaffold_38 . biological_region 76179 76183 0.999 - . logic_name=eponine scaffold_38 . biological_region 76382 76382 0.999 + . logic_name=eponine scaffold_38 . exon 68914 69993 . + . ID=Phyra79199.4;Parent=Phyra79199;constitutive=1;rank=4 scaffold_38 ensembl protein_coding_gene 70216 71415 . - . ID=Phyra79200;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000018;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 70216 71415 . - . ID=Phyra79200;Parent=Phyra79200;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 70216 70695 . - 0 ID=Phyra79200;Parent=Phyra79200;rank=6 scaffold_38 . exon 70216 70695 . - . ID=Phyra79200.6;Parent=Phyra79200;constitutive=1;rank=6 scaffold_38 . CDS 70768 70833 . - 0 ID=Phyra79200;Parent=Phyra79200;rank=5 scaffold_38 . exon 70768 70833 . - . ID=Phyra79200.5;Parent=Phyra79200;constitutive=1;rank=5 scaffold_38 . CDS 70928 70984 . - 0 ID=Phyra79200;Parent=Phyra79200;rank=4 scaffold_38 . exon 70928 70984 . - . ID=Phyra79200.4;Parent=Phyra79200;constitutive=1;rank=4 scaffold_38 . CDS 71064 71123 . - 0 ID=Phyra79200;Parent=Phyra79200;rank=3 scaffold_38 . exon 71064 71123 . - . ID=Phyra79200.3;Parent=Phyra79200;constitutive=1;rank=3 scaffold_38 . CDS 71209 71318 . - 0 ID=Phyra79200;Parent=Phyra79200;rank=2 scaffold_38 . exon 71209 71318 . - . ID=Phyra79200.2;Parent=Phyra79200;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 71400 71415 . - 0 ID=Phyra79200;Parent=Phyra79200;rank=1 scaffold_38 . exon 71400 71415 . - . ID=Phyra79200.1;Parent=Phyra79200;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 72333 74556 . + . ID=Phyra79201;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000019;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 72333 74556 . + . ID=Phyra79201;Parent=Phyra79201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 72333 74377 . + 0 ID=Phyra79201;Parent=Phyra79201;rank=1 scaffold_38 . exon 72333 74377 . + . ID=Phyra79201.1;Parent=Phyra79201;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 74514 74556 . + 0 ID=Phyra79201;Parent=Phyra79201;rank=2 scaffold_38 . exon 74514 74556 . + . ID=Phyra79201.2;Parent=Phyra79201;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 ensembl protein_coding_gene 77331 78049 . + . ID=Phyra79202;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000020;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 77331 78049 . + . ID=Phyra79202;Parent=Phyra79202;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 77331 77514 . + 0 ID=Phyra79202;Parent=Phyra79202;rank=1 scaffold_38 . exon 77331 77514 . + . ID=Phyra79202.1;Parent=Phyra79202;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 77649 78049 . + 0 ID=Phyra79202;Parent=Phyra79202;rank=2 scaffold_38 . exon 77649 78049 . + . ID=Phyra79202.2;Parent=Phyra79202;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . repeat_region 80303 80647 . ? . description=dust scaffold_38 . repeat_region 82760 100216 . ? . description=dust scaffold_38 . repeat_region 82760 100216 . ? . description=dust scaffold_38 . biological_region 100839 100844 0.999 - . logic_name=eponine scaffold_38 . biological_region 100933 100934 0.999 + . logic_name=eponine scaffold_38 . biological_region 101024 101027 0.999 - . logic_name=eponine scaffold_38 . repeat_region 101173 103299 . ? . description=dust scaffold_38 . repeat_region 103408 103686 . + . description=GypsyPi-1c_I-int scaffold_38 . biological_region 104634 104637 0.999 + . logic_name=eponine scaffold_38 . repeat_region 104739 104788 . ? . description=dust scaffold_38 . biological_region 104959 104965 0.999 - . logic_name=eponine scaffold_38 . biological_region 105016 105019 0.999 + . logic_name=eponine scaffold_38 . biological_region 105113 105117 0.999 - . logic_name=eponine scaffold_38 . repeat_region 105676 105732 . ? . description=dust scaffold_38 ensembl protein_coding_gene 100364 101033 . + . ID=Phyra79203;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000021;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 100364 101033 . + . ID=Phyra79203;Parent=Phyra79203;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 100364 100962 . + 0 ID=Phyra79203;Parent=Phyra79203;rank=1 scaffold_38 . exon 100364 100962 . + . ID=Phyra79203.1;Parent=Phyra79203;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 101012 101033 . + 0 ID=Phyra79203;Parent=Phyra79203;rank=2 scaffold_38 . exon 101012 101033 . + . ID=Phyra79203.2;Parent=Phyra79203;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . repeat_region 117625 117663 . ? . description=trf scaffold_38 ensembl protein_coding_gene 109931 110609 . - . ID=Phyra48214;biotype=protein_coding;external_name=gwEuk.38.100.1;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 109931 110609 . - . ID=Phyra48214;Parent=Phyra48214;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 109931 110058 . - 0 ID=Phyra48214;Parent=Phyra48214;rank=3 scaffold_38 . exon 109931 110058 . - . ID=Phyra48214.3;Parent=Phyra48214;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 110140 110491 . - 0 ID=Phyra48214;Parent=Phyra48214;rank=2 scaffold_38 . exon 110140 110491 . - . ID=Phyra48214.2;Parent=Phyra48214;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_38 . CDS 110568 110609 . - 0 ID=Phyra48214;Parent=Phyra48214;rank=1 scaffold_38 . exon 110568 110609 . - . ID=Phyra48214.1;Parent=Phyra48214;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 108109 109505 . + . ID=Phyra95317;biotype=protein_coding;external_name=C_scaffold_38000006;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 108109 109505 . + . ID=Phyra95317;Parent=Phyra95317;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 108109 108334 . + 0 ID=Phyra95317;Parent=Phyra95317;rank=1 scaffold_38 . exon 108109 108334 . + . ID=Phyra95317.1;Parent=Phyra95317;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 108402 108543 . + 0 ID=Phyra95317;Parent=Phyra95317;rank=2 scaffold_38 . exon 108402 108543 . + . ID=Phyra95317.2;Parent=Phyra95317;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_38 . CDS 108611 108863 . + 0 ID=Phyra95317;Parent=Phyra95317;rank=3 scaffold_38 . exon 108611 108863 . + . ID=Phyra95317.3;Parent=Phyra95317;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 108939 109505 . + 0 ID=Phyra95317;Parent=Phyra95317;rank=4 scaffold_38 . exon 108939 109505 . + . ID=Phyra95317.4;Parent=Phyra95317;constitutive=1;rank=4 scaffold_38 ensembl protein_coding_gene 111538 112639 . + . ID=Phyra95321;biotype=protein_coding;external_name=C_scaffold_38000010;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 111538 112639 . + . ID=Phyra95321;Parent=Phyra95321;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 111538 111654 . + 0 ID=Phyra95321;Parent=Phyra95321;rank=1 scaffold_38 . exon 111538 111654 . + . ID=Phyra95321.1;Parent=Phyra95321;constitutive=1;rank=1 scaffold_38 . CDS 111688 111835 . + 0 ID=Phyra95321;Parent=Phyra95321;rank=2 scaffold_38 . exon 111688 111835 . + . ID=Phyra95321.2;Parent=Phyra95321;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_38 . CDS 111866 111984 . + 0 ID=Phyra95321;Parent=Phyra95321;rank=3 scaffold_38 . exon 111866 111984 . + . ID=Phyra95321.3;Parent=Phyra95321;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 112227 112358 . + 0 ID=Phyra95321;Parent=Phyra95321;rank=4 scaffold_38 . exon 112227 112358 . + . ID=Phyra95321.4;Parent=Phyra95321;constitutive=1;rank=4 scaffold_38 . CDS 112448 112639 . + 0 ID=Phyra95321;Parent=Phyra95321;rank=5 scaffold_38 . exon 112448 112639 . + . ID=Phyra95321.5;Parent=Phyra95321;constitutive=1;rank=5 scaffold_38 . repeat_region 119689 119697 . ? . description=dust scaffold_38 . repeat_region 120487 120628 . - . description=Sola3-2_PS scaffold_38 . biological_region 120553 120556 0.999 - . logic_name=eponine scaffold_38 . repeat_region 121438 121487 . ? . description=dust scaffold_38 . repeat_region 122140 122147 . ? . description=dust scaffold_38 . biological_region 122591 122595 0.999 - . logic_name=eponine scaffold_38 . repeat_region 124468 124517 . ? . description=dust scaffold_38 . biological_region 124899 124900 0.999 - . logic_name=eponine scaffold_38 . repeat_region 124948 124962 . ? . description=dust scaffold_38 . repeat_region 126223 132848 . ? . description=dust scaffold_38 ensembl protein_coding_gene 122161 122852 . + . ID=Phyra79208;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000026;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 122161 122852 . + . ID=Phyra79208;Parent=Phyra79208;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 122161 122630 . + 0 ID=Phyra79208;Parent=Phyra79208;rank=1 scaffold_38 . exon 122161 122630 . + . ID=Phyra79208.1;Parent=Phyra79208;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 122678 122852 . + 0 ID=Phyra79208;Parent=Phyra79208;rank=2 scaffold_38 . exon 122678 122852 . + . ID=Phyra79208.2;Parent=Phyra79208;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . repeat_region 132849 134739 . - . description=GypsyPi-1c_I-int scaffold_38 . repeat_region 135714 135812 . - . description=GypsyPi-1c_I-int scaffold_38 . repeat_region 136417 136633 . - . description=GypsyPi-1c_I-int scaffold_38 ensembl protein_coding_gene 133689 134964 . - . ID=Phyra79209;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000027;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 133689 134964 . - . ID=Phyra79209;Parent=Phyra79209;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 133689 133727 . - 0 ID=Phyra79209;Parent=Phyra79209;rank=3 scaffold_38 . exon 133689 133727 . - . ID=Phyra79209.3;Parent=Phyra79209;constitutive=1;rank=3 scaffold_38 . CDS 133786 133995 . - 0 ID=Phyra79209;Parent=Phyra79209;rank=2 scaffold_38 . exon 133786 133995 . - . ID=Phyra79209.2;Parent=Phyra79209;constitutive=1;rank=2 scaffold_38 . CDS 134038 134964 . - 0 ID=Phyra79209;Parent=Phyra79209;rank=1 scaffold_38 . exon 134038 134964 . - . ID=Phyra79209.1;Parent=Phyra79209;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 135523 137315 . - . ID=Phyra79210;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000028;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 135523 137315 . - . ID=Phyra79210;Parent=Phyra79210;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 135523 135822 . - 0 ID=Phyra79210;Parent=Phyra79210;rank=5 scaffold_38 . exon 135523 135822 . - . ID=Phyra79210.5;Parent=Phyra79210;constitutive=1;rank=5 scaffold_38 . CDS 136024 136167 . - 0 ID=Phyra79210;Parent=Phyra79210;rank=4 scaffold_38 . exon 136024 136167 . - . ID=Phyra79210.4;Parent=Phyra79210;constitutive=1;rank=4 scaffold_38 . CDS 136290 136722 . - 0 ID=Phyra79210;Parent=Phyra79210;rank=3 scaffold_38 . exon 136290 136722 . - . ID=Phyra79210.3;Parent=Phyra79210;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 137171 137182 . - 0 ID=Phyra79210;Parent=Phyra79210;rank=2 scaffold_38 . exon 137171 137182 . - . ID=Phyra79210.2;Parent=Phyra79210;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_38 . CDS 137239 137315 . - 0 ID=Phyra79210;Parent=Phyra79210;rank=1 scaffold_38 . exon 137239 137315 . - . ID=Phyra79210.1;Parent=Phyra79210;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . biological_region 143346 143350 0.999 - . logic_name=eponine scaffold_38 . biological_region 143545 143546 0.999 + . logic_name=eponine scaffold_38 . repeat_region 144358 144365 . ? . description=dust scaffold_38 ensembl protein_coding_gene 137999 138944 . - . ID=Phyra79211;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000029;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 137999 138944 . - . ID=Phyra79211;Parent=Phyra79211;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 137999 138019 . - 0 ID=Phyra79211;Parent=Phyra79211;rank=3 scaffold_38 . exon 137999 138019 . - . ID=Phyra79211.3;Parent=Phyra79211;constitutive=1;rank=3 scaffold_38 . CDS 138142 138326 . - 0 ID=Phyra79211;Parent=Phyra79211;rank=2 scaffold_38 . exon 138142 138326 . - . ID=Phyra79211.2;Parent=Phyra79211;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 138395 138944 . - 0 ID=Phyra79211;Parent=Phyra79211;rank=1 scaffold_38 . exon 138395 138944 . - . ID=Phyra79211.1;Parent=Phyra79211;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 139644 140331 . + . ID=Phyra79212;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000030;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 139644 140331 . + . ID=Phyra79212;Parent=Phyra79212;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 139644 139818 . + 0 ID=Phyra79212;Parent=Phyra79212;rank=1 scaffold_38 . exon 139644 139818 . + . ID=Phyra79212.1;Parent=Phyra79212;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 139931 140331 . + 0 ID=Phyra79212;Parent=Phyra79212;rank=2 scaffold_38 . exon 139931 140331 . + . ID=Phyra79212.2;Parent=Phyra79212;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 ensembl protein_coding_gene 149164 150436 . - . ID=Phyra79213;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000031;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 149164 150436 . - . ID=Phyra79213;Parent=Phyra79213;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 149164 149895 . - 0 ID=Phyra79213;Parent=Phyra79213;rank=3 scaffold_38 . exon 149164 149895 . - . ID=Phyra79213.3;Parent=Phyra79213;constitutive=1;rank=3 scaffold_38 . CDS 149948 150301 . - 0 ID=Phyra79213;Parent=Phyra79213;rank=2 scaffold_38 . exon 149948 150301 . - . ID=Phyra79213.2;Parent=Phyra79213;constitutive=1;rank=2 scaffold_38 . CDS 150365 150436 . - 0 ID=Phyra79213;Parent=Phyra79213;rank=1 scaffold_38 . exon 150365 150436 . - . ID=Phyra79213.1;Parent=Phyra79213;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 155497 155871 . - . ID=Phyra79216;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000034;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 155497 155871 . - . ID=Phyra79216;Parent=Phyra79216;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 155497 155871 . - 0 ID=Phyra79216;Parent=Phyra79216;rank=1 scaffold_38 . exon 155497 155871 . - . ID=Phyra79216.1;Parent=Phyra79216;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 150705 151177 . - . ID=Phyra95324;biotype=protein_coding;external_name=C_scaffold_38000013;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 150705 151177 . - . ID=Phyra95324;Parent=Phyra95324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 150705 150937 . - 0 ID=Phyra95324;Parent=Phyra95324;rank=3 scaffold_38 . exon 150705 150937 . - . ID=Phyra95324.3;Parent=Phyra95324;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 151006 151096 . - 0 ID=Phyra95324;Parent=Phyra95324;rank=2 scaffold_38 . exon 151006 151096 . - . ID=Phyra95324.2;Parent=Phyra95324;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_38 . CDS 151175 151177 . - 0 ID=Phyra95324;Parent=Phyra95324;rank=1 scaffold_38 . exon 151175 151177 . - . ID=Phyra95324.1;Parent=Phyra95324;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 151461 153956 . - . ID=Phyra95327;biotype=protein_coding;external_name=C_scaffold_38000016;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 151461 153956 . - . ID=Phyra95327;Parent=Phyra95327;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 151461 151568 . - 0 ID=Phyra95327;Parent=Phyra95327;rank=10 scaffold_38 . exon 151461 151568 . - . ID=Phyra95327.10;Parent=Phyra95327;constitutive=1;rank=10 scaffold_38 . CDS 151644 151730 . - 0 ID=Phyra95327;Parent=Phyra95327;rank=9 scaffold_38 . exon 151644 151730 . - . ID=Phyra95327.9;Parent=Phyra95327;constitutive=1;rank=9 scaffold_38 . CDS 151799 151908 . - 0 ID=Phyra95327;Parent=Phyra95327;rank=8 scaffold_38 . exon 151799 151908 . - . ID=Phyra95327.8;Parent=Phyra95327;constitutive=1;ensembl_phase=1;rank=8 scaffold_38 . CDS 151964 152134 . - 0 ID=Phyra95327;Parent=Phyra95327;rank=7 scaffold_38 . exon 151964 152134 . - . ID=Phyra95327.7;Parent=Phyra95327;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_38 . CDS 152205 152303 . - 0 ID=Phyra95327;Parent=Phyra95327;rank=6 scaffold_38 . exon 152205 152303 . - . ID=Phyra95327.6;Parent=Phyra95327;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_38 . CDS 152373 152421 . - 0 ID=Phyra95327;Parent=Phyra95327;rank=5 scaffold_38 . exon 152373 152421 . - . ID=Phyra95327.5;Parent=Phyra95327;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_38 . CDS 152493 152561 . - 0 ID=Phyra95327;Parent=Phyra95327;rank=4 scaffold_38 . exon 152493 152561 . - . ID=Phyra95327.4;Parent=Phyra95327;constitutive=1;rank=4 scaffold_38 . CDS 153002 153294 . - 0 ID=Phyra95327;Parent=Phyra95327;rank=3 scaffold_38 . exon 153002 153294 . - . ID=Phyra95327.3;Parent=Phyra95327;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 153374 153589 . - 0 ID=Phyra95327;Parent=Phyra95327;rank=2 scaffold_38 . exon 153374 153589 . - . ID=Phyra95327.2;Parent=Phyra95327;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 153842 153956 . - 0 ID=Phyra95327;Parent=Phyra95327;rank=1 scaffold_38 . exon 153842 153956 . - . ID=Phyra95327.1;Parent=Phyra95327;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 157140 158710 . - . ID=Phyra95329;biotype=protein_coding;external_name=C_scaffold_38000018;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 157140 158710 . - . ID=Phyra95329;Parent=Phyra95329;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 157140 157197 . - 0 ID=Phyra95329;Parent=Phyra95329;rank=4 scaffold_38 . exon 157140 157197 . - . ID=Phyra95329.4;Parent=Phyra95329;constitutive=1;ensembl_phase=2;rank=4 scaffold_38 . CDS 157584 158166 . - 0 ID=Phyra95329;Parent=Phyra95329;rank=3 scaffold_38 . CDS 158297 158371 . - 0 ID=Phyra95329;Parent=Phyra95329;rank=2 scaffold_38 . CDS 158563 158710 . - 0 ID=Phyra95329;Parent=Phyra95329;rank=1 scaffold_38 . biological_region 158720 158723 0.999 + . logic_name=eponine scaffold_38 . repeat_region 161839 161873 . ? . description=trf scaffold_38 . repeat_region 162545 162552 . ? . description=dust scaffold_38 ensembl protein_coding_gene 163890 165528 . + . ID=Phyra79217;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000035;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 163890 165528 . + . ID=Phyra79217;Parent=Phyra79217;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 163890 164268 . + 0 ID=Phyra79217;Parent=Phyra79217;rank=1 scaffold_38 . exon 163890 164268 . + . ID=Phyra79217.1;Parent=Phyra79217;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 164335 164522 . + 0 ID=Phyra79217;Parent=Phyra79217;rank=2 scaffold_38 . exon 164335 164522 . + . ID=Phyra79217.2;Parent=Phyra79217;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 164581 165528 . + 0 ID=Phyra79217;Parent=Phyra79217;rank=3 scaffold_38 . exon 164581 165528 . + . ID=Phyra79217.3;Parent=Phyra79217;constitutive=1;rank=3 scaffold_38 ensembl protein_coding_gene 165646 167956 . - . ID=Phyra79218;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000036;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 165646 167956 . - . ID=Phyra79218;Parent=Phyra79218;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 165646 165756 . - 0 ID=Phyra79218;Parent=Phyra79218;rank=6 scaffold_38 . exon 165646 165756 . - . ID=Phyra79218.6;Parent=Phyra79218;constitutive=1;rank=6 scaffold_38 . CDS 165821 166023 . - 0 ID=Phyra79218;Parent=Phyra79218;rank=5 scaffold_38 . exon 165821 166023 . - . ID=Phyra79218.5;Parent=Phyra79218;constitutive=1;ensembl_phase=1;rank=5 scaffold_38 . CDS 166071 166330 . - 0 ID=Phyra79218;Parent=Phyra79218;rank=4 scaffold_38 . exon 166071 166330 . - . ID=Phyra79218.4;Parent=Phyra79218;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_38 . CDS 166493 167175 . - 0 ID=Phyra79218;Parent=Phyra79218;rank=3 scaffold_38 . exon 166493 167175 . - . ID=Phyra79218.3;Parent=Phyra79218;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_38 . CDS 167265 167452 . - 0 ID=Phyra79218;Parent=Phyra79218;rank=2 scaffold_38 . CDS 167518 167956 . - 0 ID=Phyra79218;Parent=Phyra79218;rank=1 scaffold_38 . exon 157584 158166 . - . ID=Phyra95329.3;Parent=Phyra95329;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_38 . exon 158297 158371 . - . ID=Phyra95329.2;Parent=Phyra95329;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_38 . exon 158563 158710 . - . ID=Phyra95329.1;Parent=Phyra95329;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . exon 167265 167452 . - . ID=Phyra79218.2;Parent=Phyra79218;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . exon 167518 167956 . - . ID=Phyra79218.1;Parent=Phyra79218;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 169196 169574 . - . ID=Phyra79219;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000037;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 169196 169574 . - . ID=Phyra79219;Parent=Phyra79219;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 169196 169315 . - 0 ID=Phyra79219;Parent=Phyra79219;rank=2 scaffold_38 . exon 169196 169315 . - . ID=Phyra79219.2;Parent=Phyra79219;constitutive=1;rank=2 scaffold_38 . CDS 169386 169574 . - 0 ID=Phyra79219;Parent=Phyra79219;rank=1 scaffold_38 . exon 169386 169574 . - . ID=Phyra79219.1;Parent=Phyra79219;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 170205 170525 . - . ID=Phyra79220;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000038;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 170205 170525 . - . ID=Phyra79220;Parent=Phyra79220;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 170205 170525 . - 0 ID=Phyra79220;Parent=Phyra79220;rank=1 scaffold_38 . exon 170205 170525 . - . ID=Phyra79220.1;Parent=Phyra79220;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 171642 171962 . + . ID=Phyra79221;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000039;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 171642 171962 . + . ID=Phyra79221;Parent=Phyra79221;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 171642 171962 . + 0 ID=Phyra79221;Parent=Phyra79221;rank=1 scaffold_38 . exon 171642 171962 . + . ID=Phyra79221.1;Parent=Phyra79221;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 172594 172987 . + . ID=Phyra79222;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000040;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 172594 172987 . + . ID=Phyra79222;Parent=Phyra79222;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 172594 172782 . + 0 ID=Phyra79222;Parent=Phyra79222;rank=1 scaffold_38 . exon 172594 172782 . + . ID=Phyra79222.1;Parent=Phyra79222;constitutive=1;rank=1 scaffold_38 . CDS 172856 172987 . + 0 ID=Phyra79222;Parent=Phyra79222;rank=2 scaffold_38 . exon 172856 172987 . + . ID=Phyra79222.2;Parent=Phyra79222;constitutive=1;rank=2 scaffold_38 . biological_region 178010 178014 0.999 + . logic_name=eponine scaffold_38 . repeat_region 178451 183334 . ? . description=dust scaffold_38 . repeat_region 184315 184364 . ? . description=dust scaffold_38 ensembl protein_coding_gene 185283 185739 . - . ID=Phyra79223;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000041;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 185283 185739 . - . ID=Phyra79223;Parent=Phyra79223;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 185283 185396 . - 0 ID=Phyra79223;Parent=Phyra79223;rank=2 scaffold_38 . exon 185283 185396 . - . ID=Phyra79223.2;Parent=Phyra79223;constitutive=1;rank=2 scaffold_38 . CDS 185551 185739 . - 0 ID=Phyra79223;Parent=Phyra79223;rank=1 scaffold_38 . exon 185551 185739 . - . ID=Phyra79223.1;Parent=Phyra79223;constitutive=1;rank=1 scaffold_38 . repeat_region 186752 186789 . ? . description=trf scaffold_38 . repeat_region 193896 193922 . ? . description=trf scaffold_38 ensembl protein_coding_gene 187030 187485 . + . ID=Phyra79224;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000042;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 187030 187485 . + . ID=Phyra79224;Parent=Phyra79224;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 187030 187218 . + 0 ID=Phyra79224;Parent=Phyra79224;rank=1 scaffold_38 . exon 187030 187218 . + . ID=Phyra79224.1;Parent=Phyra79224;constitutive=1;rank=1 scaffold_38 . CDS 187372 187485 . + 0 ID=Phyra79224;Parent=Phyra79224;rank=2 scaffold_38 . exon 187372 187485 . + . ID=Phyra79224.2;Parent=Phyra79224;constitutive=1;rank=2 scaffold_38 ensembl protein_coding_gene 191142 192847 . - . ID=Phyra79225;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000043;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 191142 192847 . - . ID=Phyra79225;Parent=Phyra79225;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 191142 192089 . - 0 ID=Phyra79225;Parent=Phyra79225;rank=3 scaffold_38 . exon 191142 192089 . - . ID=Phyra79225.3;Parent=Phyra79225;constitutive=1;rank=3 scaffold_38 . CDS 192151 192338 . - 0 ID=Phyra79225;Parent=Phyra79225;rank=2 scaffold_38 . exon 192151 192338 . - . ID=Phyra79225.2;Parent=Phyra79225;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 192397 192847 . - 0 ID=Phyra79225;Parent=Phyra79225;rank=1 scaffold_38 . exon 192397 192847 . - . ID=Phyra79225.1;Parent=Phyra79225;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 193220 193896 . + . ID=Phyra79226;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000044;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 193220 193896 . + . ID=Phyra79226;Parent=Phyra79226;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 193220 193581 . + 0 ID=Phyra79226;Parent=Phyra79226;rank=1 scaffold_38 . exon 193220 193581 . + . ID=Phyra79226.1;Parent=Phyra79226;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 193812 193896 . + 0 ID=Phyra79226;Parent=Phyra79226;rank=2 scaffold_38 . exon 193812 193896 . + . ID=Phyra79226.2;Parent=Phyra79226;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 ensembl protein_coding_gene 195526 196995 . - . ID=Phyra79227;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000045;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 195526 196995 . - . ID=Phyra79227;Parent=Phyra79227;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 195526 195531 . - 0 ID=Phyra79227;Parent=Phyra79227;rank=4 scaffold_38 . exon 195526 195531 . - . ID=Phyra79227.4;Parent=Phyra79227;constitutive=1;rank=4 scaffold_38 . CDS 195713 196237 . - 0 ID=Phyra79227;Parent=Phyra79227;rank=3 scaffold_38 . exon 195713 196237 . - . ID=Phyra79227.3;Parent=Phyra79227;constitutive=1;rank=3 scaffold_38 . CDS 196299 196486 . - 0 ID=Phyra79227;Parent=Phyra79227;rank=2 scaffold_38 . exon 196299 196486 . - . ID=Phyra79227.2;Parent=Phyra79227;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 196545 196995 . - 0 ID=Phyra79227;Parent=Phyra79227;rank=1 scaffold_38 . biological_region 200421 200425 0.999 - . logic_name=eponine scaffold_38 . biological_region 200437 200438 0.999 + . logic_name=eponine scaffold_38 . biological_region 200464 200470 0.999 - . logic_name=eponine scaffold_38 . biological_region 200505 200508 0.999 - . logic_name=eponine scaffold_38 . biological_region 200520 200525 0.999 + . logic_name=eponine scaffold_38 . biological_region 200531 200533 0.999 - . logic_name=eponine scaffold_38 . biological_region 200561 200563 0.999 + . logic_name=eponine scaffold_38 . biological_region 201183 201185 0.999 - . logic_name=eponine scaffold_38 . exon 196545 196995 . - . ID=Phyra79227.1;Parent=Phyra79227;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 197368 198044 . + . ID=Phyra95330;biotype=protein_coding;external_name=C_scaffold_38000019;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 197368 198044 . + . ID=Phyra95330;Parent=Phyra95330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 197368 197729 . + 0 ID=Phyra95330;Parent=Phyra95330;rank=1 scaffold_38 . exon 197368 197729 . + . ID=Phyra95330.1;Parent=Phyra95330;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 197960 198044 . + 0 ID=Phyra95330;Parent=Phyra95330;rank=2 scaffold_38 . exon 197960 198044 . + . ID=Phyra95330.2;Parent=Phyra95330;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 ensembl protein_coding_gene 198362 200707 . - . ID=Phyra95331;biotype=protein_coding;external_name=C_scaffold_38000020;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 198362 200707 . - . ID=Phyra95331;Parent=Phyra95331;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 198362 198469 . - 0 ID=Phyra95331;Parent=Phyra95331;rank=10 scaffold_38 . exon 198362 198469 . - . ID=Phyra95331.10;Parent=Phyra95331;constitutive=1;rank=10 scaffold_38 . CDS 198536 198597 . - 0 ID=Phyra95331;Parent=Phyra95331;rank=9 scaffold_38 . exon 198536 198597 . - . ID=Phyra95331.9;Parent=Phyra95331;constitutive=1;ensembl_phase=1;rank=9 scaffold_38 . CDS 198674 198727 . - 0 ID=Phyra95331;Parent=Phyra95331;rank=8 scaffold_38 . exon 198674 198727 . - . ID=Phyra95331.8;Parent=Phyra95331;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_38 . CDS 198778 198802 . - 0 ID=Phyra95331;Parent=Phyra95331;rank=7 scaffold_38 . exon 198778 198802 . - . ID=Phyra95331.7;Parent=Phyra95331;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_38 . CDS 198915 199099 . - 0 ID=Phyra95331;Parent=Phyra95331;rank=6 scaffold_38 . exon 198915 199099 . - . ID=Phyra95331.6;Parent=Phyra95331;constitutive=1;ensembl_phase=1;rank=6 scaffold_38 . CDS 199209 199265 . - 0 ID=Phyra95331;Parent=Phyra95331;rank=5 scaffold_38 . exon 199209 199265 . - . ID=Phyra95331.5;Parent=Phyra95331;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_38 . CDS 199350 199809 . - 0 ID=Phyra95331;Parent=Phyra95331;rank=4 scaffold_38 . exon 199350 199809 . - . ID=Phyra95331.4;Parent=Phyra95331;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_38 . CDS 199887 199990 . - 0 ID=Phyra95331;Parent=Phyra95331;rank=3 scaffold_38 . exon 199887 199990 . - . ID=Phyra95331.3;Parent=Phyra95331;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 200059 200298 . - 0 ID=Phyra95331;Parent=Phyra95331;rank=2 scaffold_38 . exon 200059 200298 . - . ID=Phyra95331.2;Parent=Phyra95331;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 200332 200707 . - 0 ID=Phyra95331;Parent=Phyra95331;rank=1 scaffold_38 . exon 200332 200707 . - . ID=Phyra95331.1;Parent=Phyra95331;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 200923 204295 . + . ID=Phyra95334;biotype=protein_coding;external_name=C_scaffold_38000023;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 200923 204295 . + . ID=Phyra95334;Parent=Phyra95334;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 200923 201269 . + 0 ID=Phyra95334;Parent=Phyra95334;rank=1 scaffold_38 . exon 200923 201269 . + . ID=Phyra95334.1;Parent=Phyra95334;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 201333 202090 . + 0 ID=Phyra95334;Parent=Phyra95334;rank=2 scaffold_38 . exon 201333 202090 . + . ID=Phyra95334.2;Parent=Phyra95334;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 202142 202348 . + 0 ID=Phyra95334;Parent=Phyra95334;rank=3 scaffold_38 . exon 202142 202348 . + . ID=Phyra95334.3;Parent=Phyra95334;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 203117 203208 . + 0 ID=Phyra95334;Parent=Phyra95334;rank=4 scaffold_38 . exon 203117 203208 . + . ID=Phyra95334.4;Parent=Phyra95334;constitutive=1;ensembl_phase=1;rank=4 scaffold_38 . CDS 203527 203778 . + 0 ID=Phyra95334;Parent=Phyra95334;rank=5 scaffold_38 . exon 203527 203778 . + . ID=Phyra95334.5;Parent=Phyra95334;constitutive=1;rank=5 scaffold_38 . CDS 203872 203977 . + 0 ID=Phyra95334;Parent=Phyra95334;rank=6 scaffold_38 . exon 203872 203977 . + . ID=Phyra95334.6;Parent=Phyra95334;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_38 . CDS 204011 204213 . + 0 ID=Phyra95334;Parent=Phyra95334;rank=7 scaffold_38 . exon 204011 204213 . + . ID=Phyra95334.7;Parent=Phyra95334;constitutive=1;ensembl_phase=1;rank=7 scaffold_38 . CDS 204293 204295 . + 0 ID=Phyra95334;Parent=Phyra95334;rank=8 scaffold_38 . exon 204293 204295 . + . ID=Phyra95334.8;Parent=Phyra95334;constitutive=1;rank=8 scaffold_38 . repeat_region 207591 207598 . ? . description=dust scaffold_38 ensembl protein_coding_gene 214185 218108 . - . ID=Phyra79231;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000049;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 214185 218108 . - . ID=Phyra79231;Parent=Phyra79231;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 214185 214261 . - 0 ID=Phyra79231;Parent=Phyra79231;rank=6 scaffold_38 . exon 214185 214261 . - . ID=Phyra79231.6;Parent=Phyra79231;constitutive=1;ensembl_phase=1;rank=6 scaffold_38 . CDS 214500 214617 . - 0 ID=Phyra79231;Parent=Phyra79231;rank=5 scaffold_38 . exon 214500 214617 . - . ID=Phyra79231.5;Parent=Phyra79231;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_38 . CDS 214683 217001 . - 0 ID=Phyra79231;Parent=Phyra79231;rank=4 scaffold_38 . exon 214683 217001 . - . ID=Phyra79231.4;Parent=Phyra79231;constitutive=1;rank=4 scaffold_38 . CDS 217401 217754 . - 0 ID=Phyra79231;Parent=Phyra79231;rank=3 scaffold_38 . CDS 217887 217967 . - 0 ID=Phyra79231;Parent=Phyra79231;rank=2 scaffold_38 . CDS 218031 218108 . - 0 ID=Phyra79231;Parent=Phyra79231;rank=1 scaffold_38 . biological_region 218174 218177 0.999 - . logic_name=eponine scaffold_38 . biological_region 221338 221341 0.999 + . logic_name=eponine scaffold_38 . biological_region 221375 221377 0.999 - . logic_name=eponine scaffold_38 . biological_region 221398 221400 0.999 - . logic_name=eponine scaffold_38 . biological_region 221810 221814 0.999 - . logic_name=eponine scaffold_38 . repeat_region 222666 222689 . ? . description=trf scaffold_38 . exon 217401 217754 . - . ID=Phyra79231.3;Parent=Phyra79231;constitutive=1;rank=3 scaffold_38 . exon 217887 217967 . - . ID=Phyra79231.2;Parent=Phyra79231;constitutive=1;rank=2 scaffold_38 . exon 218031 218108 . - . ID=Phyra79231.1;Parent=Phyra79231;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 220939 223781 . - . ID=Phyra79232;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000050;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 220939 223781 . - . ID=Phyra79232;Parent=Phyra79232;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 220939 220954 . - 0 ID=Phyra79232;Parent=Phyra79232;rank=4 scaffold_38 . exon 220939 220954 . - . ID=Phyra79232.4;Parent=Phyra79232;constitutive=1;ensembl_phase=2;rank=4 scaffold_38 . CDS 220990 221864 . - 0 ID=Phyra79232;Parent=Phyra79232;rank=3 scaffold_38 . exon 220990 221864 . - . ID=Phyra79232.3;Parent=Phyra79232;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_38 . CDS 221957 222089 . - 0 ID=Phyra79232;Parent=Phyra79232;rank=2 scaffold_38 . exon 221957 222089 . - . ID=Phyra79232.2;Parent=Phyra79232;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 222331 223781 . - 0 ID=Phyra79232;Parent=Phyra79232;rank=1 scaffold_38 . exon 222331 223781 . - . ID=Phyra79232.1;Parent=Phyra79232;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . repeat_region 230171 230220 . ? . description=dust scaffold_38 . repeat_region 231726 234332 . ? . description=dust scaffold_38 ensembl protein_coding_gene 226493 228096 . - . ID=Phyra79233;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000051;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 226493 228096 . - . ID=Phyra79233;Parent=Phyra79233;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 226493 226690 . - 0 ID=Phyra79233;Parent=Phyra79233;rank=4 scaffold_38 . exon 226493 226690 . - . ID=Phyra79233.4;Parent=Phyra79233;constitutive=1;rank=4 scaffold_38 . CDS 226759 226886 . - 0 ID=Phyra79233;Parent=Phyra79233;rank=3 scaffold_38 . exon 226759 226886 . - . ID=Phyra79233.3;Parent=Phyra79233;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 226923 227120 . - 0 ID=Phyra79233;Parent=Phyra79233;rank=2 scaffold_38 . exon 226923 227120 . - . ID=Phyra79233.2;Parent=Phyra79233;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 227145 228096 . - 0 ID=Phyra79233;Parent=Phyra79233;rank=1 scaffold_38 . exon 227145 228096 . - . ID=Phyra79233.1;Parent=Phyra79233;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . repeat_region 241614 241751 . ? . description=trf scaffold_38 . repeat_region 241687 241784 . ? . description=trf scaffold_38 . repeat_region 247164 247171 . ? . description=dust scaffold_38 . repeat_region 247262 247322 . ? . description=dust scaffold_38 . repeat_region 247458 247517 . ? . description=dust scaffold_38 . biological_region 252646 252647 0.999 - . logic_name=eponine scaffold_38 . repeat_region 252958 253020 . ? . description=dust scaffold_38 . repeat_region 253150 253233 . ? . description=dust scaffold_38 ensembl protein_coding_gene 248301 250661 . - . ID=Phyra48126;biotype=protein_coding;external_name=gwEuk.38.12.1;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 248301 250661 . - . ID=Phyra48126;Parent=Phyra48126;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 248301 248707 . - 0 ID=Phyra48126;Parent=Phyra48126;rank=2 scaffold_38 . exon 248301 248707 . - . ID=Phyra48126.2;Parent=Phyra48126;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 250427 250661 . - 0 ID=Phyra48126;Parent=Phyra48126;rank=1 scaffold_38 . exon 250427 250661 . - . ID=Phyra48126.1;Parent=Phyra48126;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 245844 246525 . + . ID=Phyra79234;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000052;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 245844 246525 . + . ID=Phyra79234;Parent=Phyra79234;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 245844 245846 . + 0 ID=Phyra79234;Parent=Phyra79234;rank=1 scaffold_38 . exon 245844 245846 . + . ID=Phyra79234.1;Parent=Phyra79234;constitutive=1;rank=1 scaffold_38 . CDS 245885 246043 . + 0 ID=Phyra79234;Parent=Phyra79234;rank=2 scaffold_38 . exon 245885 246043 . + . ID=Phyra79234.2;Parent=Phyra79234;constitutive=1;rank=2 scaffold_38 . CDS 246146 246209 . + 0 ID=Phyra79234;Parent=Phyra79234;rank=3 scaffold_38 . exon 246146 246209 . + . ID=Phyra79234.3;Parent=Phyra79234;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_38 . CDS 246266 246525 . + 0 ID=Phyra79234;Parent=Phyra79234;rank=4 scaffold_38 . exon 246266 246525 . + . ID=Phyra79234.4;Parent=Phyra79234;constitutive=1;ensembl_phase=1;rank=4 scaffold_38 ensembl protein_coding_gene 251354 254787 . - . ID=Phyra79236;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000054;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 251354 254787 . - . ID=Phyra79236;Parent=Phyra79236;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 251354 252438 . - 0 ID=Phyra79236;Parent=Phyra79236;rank=5 scaffold_38 . exon 251354 252438 . - . ID=Phyra79236.5;Parent=Phyra79236;constitutive=1;ensembl_phase=1;rank=5 scaffold_38 . CDS 252487 252526 . - 0 ID=Phyra79236;Parent=Phyra79236;rank=4 scaffold_38 . exon 252487 252526 . - . ID=Phyra79236.4;Parent=Phyra79236;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_38 . CDS 252688 252697 . - 0 ID=Phyra79236;Parent=Phyra79236;rank=3 scaffold_38 . exon 252688 252697 . - . ID=Phyra79236.3;Parent=Phyra79236;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 252846 252860 . - 0 ID=Phyra79236;Parent=Phyra79236;rank=2 scaffold_38 . exon 252846 252860 . - . ID=Phyra79236.2;Parent=Phyra79236;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_38 . CDS 253067 254787 . - 0 ID=Phyra79236;Parent=Phyra79236;rank=1 scaffold_38 . exon 253067 254787 . - . ID=Phyra79236.1;Parent=Phyra79236;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 ensembl protein_coding_gene 255370 256497 . - . ID=Phyra79237;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000055;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 255370 256497 . - . ID=Phyra79237;Parent=Phyra79237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 255370 255917 . - 0 ID=Phyra79237;Parent=Phyra79237;rank=2 scaffold_38 . exon 255370 255917 . - . ID=Phyra79237.2;Parent=Phyra79237;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 256041 256497 . - 0 ID=Phyra79237;Parent=Phyra79237;rank=1 scaffold_38 . repeat_region 256743 256767 . ? . description=trf scaffold_38 ensembl protein_coding_gene 257238 259793 . + . ID=Phyra71690;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_38000004;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 257238 259793 . + . ID=Phyra71690;Parent=Phyra71690;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 257238 257354 . + 0 ID=Phyra71690;Parent=Phyra71690;rank=1 scaffold_38 . exon 257238 257354 . + . ID=Phyra71690.1;Parent=Phyra71690;constitutive=1;rank=1 scaffold_38 . CDS 257385 257837 . + 0 ID=Phyra71690;Parent=Phyra71690;rank=2 scaffold_38 . exon 257385 257837 . + . ID=Phyra71690.2;Parent=Phyra71690;constitutive=1;rank=2 scaffold_38 . CDS 257908 258437 . + 0 ID=Phyra71690;Parent=Phyra71690;rank=3 scaffold_38 . exon 257908 258437 . + . ID=Phyra71690.3;Parent=Phyra71690;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_38 . CDS 258506 258578 . + 0 ID=Phyra71690;Parent=Phyra71690;rank=4 scaffold_38 . exon 258506 258578 . + . ID=Phyra71690.4;Parent=Phyra71690;constitutive=1;ensembl_phase=2;rank=4 scaffold_38 . CDS 258649 259126 . + 0 ID=Phyra71690;Parent=Phyra71690;rank=5 scaffold_38 . exon 258649 259126 . + . ID=Phyra71690.5;Parent=Phyra71690;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_38 . CDS 259196 259493 . + 0 ID=Phyra71690;Parent=Phyra71690;rank=6 scaffold_38 . exon 259196 259493 . + . ID=Phyra71690.6;Parent=Phyra71690;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_38 . CDS 259574 259793 . + 0 ID=Phyra71690;Parent=Phyra71690;rank=7 scaffold_38 . exon 259574 259793 . + . ID=Phyra71690.7;Parent=Phyra71690;constitutive=1;ensembl_phase=2;rank=7 scaffold_38 . exon 256041 256497 . - . ID=Phyra79237.1;Parent=Phyra79237;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 260152 261375 . + . ID=Phyra79239;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000057;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 260152 261375 . + . ID=Phyra79239;Parent=Phyra79239;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 260152 261375 . + 0 ID=Phyra79239;Parent=Phyra79239;rank=1 scaffold_38 . exon 260152 261375 . + . ID=Phyra79239.1;Parent=Phyra79239;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 261768 264826 . - . ID=Phyra95339;biotype=protein_coding;external_name=C_scaffold_38000028;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 261768 264826 . - . ID=Phyra95339;Parent=Phyra95339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 261768 261776 . - 0 ID=Phyra95339;Parent=Phyra95339;rank=10 scaffold_38 . exon 261768 261776 . - . ID=Phyra95339.10;Parent=Phyra95339;constitutive=1;rank=10 scaffold_38 . CDS 261817 261944 . - 0 ID=Phyra95339;Parent=Phyra95339;rank=9 scaffold_38 . exon 261817 261944 . - . ID=Phyra95339.9;Parent=Phyra95339;constitutive=1;ensembl_phase=1;rank=9 scaffold_38 . CDS 261966 262510 . - 0 ID=Phyra95339;Parent=Phyra95339;rank=8 scaffold_38 . exon 261966 262510 . - . ID=Phyra95339.8;Parent=Phyra95339;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_38 . CDS 262595 263102 . - 0 ID=Phyra95339;Parent=Phyra95339;rank=7 scaffold_38 . exon 262595 263102 . - . ID=Phyra95339.7;Parent=Phyra95339;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_38 . CDS 263571 263924 . - 0 ID=Phyra95339;Parent=Phyra95339;rank=6 scaffold_38 . exon 263571 263924 . - . ID=Phyra95339.6;Parent=Phyra95339;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_38 . CDS 264130 264212 . - 0 ID=Phyra95339;Parent=Phyra95339;rank=5 scaffold_38 . exon 264130 264212 . - . ID=Phyra95339.5;Parent=Phyra95339;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_38 . CDS 264253 264287 . - 0 ID=Phyra95339;Parent=Phyra95339;rank=4 scaffold_38 . exon 264253 264287 . - . ID=Phyra95339.4;Parent=Phyra95339;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_38 . CDS 264331 264435 . - 0 ID=Phyra95339;Parent=Phyra95339;rank=3 scaffold_38 . exon 264331 264435 . - . ID=Phyra95339.3;Parent=Phyra95339;constitutive=1;rank=3 scaffold_38 . CDS 264502 264576 . - 0 ID=Phyra95339;Parent=Phyra95339;rank=2 scaffold_38 . exon 264502 264576 . - . ID=Phyra95339.2;Parent=Phyra95339;constitutive=1;rank=2 scaffold_38 . CDS 264647 264826 . - 0 ID=Phyra95339;Parent=Phyra95339;rank=1 scaffold_38 . exon 264647 264826 . - . ID=Phyra95339.1;Parent=Phyra95339;constitutive=1;rank=1 scaffold_38 . repeat_region 265662 265670 . ? . description=dust scaffold_38 . biological_region 266955 266956 0.999 - . logic_name=eponine scaffold_38 . biological_region 268038 268041 0.999 - . logic_name=eponine scaffold_38 . repeat_region 272432 272454 . ? . description=dust scaffold_38 . biological_region 273925 273926 0.999 - . logic_name=eponine scaffold_38 ensembl protein_coding_gene 271913 272473 . + . ID=Phyra79241;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000059;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 271913 272473 . + . ID=Phyra79241;Parent=Phyra79241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 271913 272473 . + 0 ID=Phyra79241;Parent=Phyra79241;rank=1 scaffold_38 . exon 271913 272473 . + . ID=Phyra79241.1;Parent=Phyra79241;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 272627 274051 . - . ID=Phyra79242;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000060;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 272627 274051 . - . ID=Phyra79242;Parent=Phyra79242;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 272627 273031 . - 0 ID=Phyra79242;Parent=Phyra79242;rank=4 scaffold_38 . exon 272627 273031 . - . ID=Phyra79242.4;Parent=Phyra79242;constitutive=1;rank=4 scaffold_38 . CDS 273094 273497 . - 0 ID=Phyra79242;Parent=Phyra79242;rank=3 scaffold_38 . exon 273094 273497 . - . ID=Phyra79242.3;Parent=Phyra79242;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 273565 273630 . - 0 ID=Phyra79242;Parent=Phyra79242;rank=2 scaffold_38 . exon 273565 273630 . - . ID=Phyra79242.2;Parent=Phyra79242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 273712 274051 . - 0 ID=Phyra79242;Parent=Phyra79242;rank=1 scaffold_38 . exon 273712 274051 . - . ID=Phyra79242.1;Parent=Phyra79242;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 274253 276059 . + . ID=Phyra95340;biotype=protein_coding;external_name=C_scaffold_38000029;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 274253 276059 . + . ID=Phyra95340;Parent=Phyra95340;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 274253 274411 . + 0 ID=Phyra95340;Parent=Phyra95340;rank=1 scaffold_38 . exon 274253 274411 . + . ID=Phyra95340.1;Parent=Phyra95340;constitutive=1;rank=1 scaffold_38 . CDS 274513 274625 . + 0 ID=Phyra95340;Parent=Phyra95340;rank=2 scaffold_38 . exon 274513 274625 . + . ID=Phyra95340.2;Parent=Phyra95340;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_38 . CDS 274686 274792 . + 0 ID=Phyra95340;Parent=Phyra95340;rank=3 scaffold_38 . exon 274686 274792 . + . ID=Phyra95340.3;Parent=Phyra95340;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 274864 274965 . + 0 ID=Phyra95340;Parent=Phyra95340;rank=4 scaffold_38 . exon 274864 274965 . + . ID=Phyra95340.4;Parent=Phyra95340;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_38 . CDS 275029 275171 . + 0 ID=Phyra95340;Parent=Phyra95340;rank=5 scaffold_38 . exon 275029 275171 . + . ID=Phyra95340.5;Parent=Phyra95340;constitutive=1;ensembl_phase=1;rank=5 scaffold_38 . CDS 275318 275631 . + 0 ID=Phyra95340;Parent=Phyra95340;rank=6 scaffold_38 . CDS 275714 275795 . + 0 ID=Phyra95340;Parent=Phyra95340;rank=7 scaffold_38 . CDS 275858 275909 . + 0 ID=Phyra95340;Parent=Phyra95340;rank=8 scaffold_38 . CDS 275989 276059 . + 0 ID=Phyra95340;Parent=Phyra95340;rank=9 scaffold_38 ensembl protein_coding_gene 281960 283577 . - . ID=Phyra48136;biotype=protein_coding;external_name=gwEuk.38.22.1;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 281960 283577 . - . ID=Phyra48136;Parent=Phyra48136;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 281960 282015 . - 0 ID=Phyra48136;Parent=Phyra48136;rank=8 scaffold_38 . exon 281960 282015 . - . ID=Phyra48136.8;Parent=Phyra48136;constitutive=1;ensembl_phase=1;rank=8 scaffold_38 . CDS 282083 282176 . - 0 ID=Phyra48136;Parent=Phyra48136;rank=7 scaffold_38 . exon 282083 282176 . - . ID=Phyra48136.7;Parent=Phyra48136;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_38 . CDS 282254 282365 . - 0 ID=Phyra48136;Parent=Phyra48136;rank=6 scaffold_38 . exon 282254 282365 . - . ID=Phyra48136.6;Parent=Phyra48136;constitutive=1;ensembl_phase=2;rank=6 scaffold_38 . CDS 282437 282555 . - 0 ID=Phyra48136;Parent=Phyra48136;rank=5 scaffold_38 . exon 282437 282555 . - . ID=Phyra48136.5;Parent=Phyra48136;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_38 . CDS 282621 282954 . - 0 ID=Phyra48136;Parent=Phyra48136;rank=4 scaffold_38 . exon 282621 282954 . - . ID=Phyra48136.4;Parent=Phyra48136;constitutive=1;ensembl_phase=2;rank=4 scaffold_38 . CDS 283037 283165 . - 0 ID=Phyra48136;Parent=Phyra48136;rank=3 scaffold_38 . exon 283037 283165 . - . ID=Phyra48136.3;Parent=Phyra48136;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_38 . CDS 283252 283319 . - 0 ID=Phyra48136;Parent=Phyra48136;rank=2 scaffold_38 . exon 283252 283319 . - . ID=Phyra48136.2;Parent=Phyra48136;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_38 . CDS 283395 283577 . - 0 ID=Phyra48136;Parent=Phyra48136;rank=1 scaffold_38 . exon 283395 283577 . - . ID=Phyra48136.1;Parent=Phyra48136;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 283995 284280 . - . ID=Phyra48138;biotype=protein_coding;external_name=gwEuk.38.24.1;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 283995 284280 . - . ID=Phyra48138;Parent=Phyra48138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 283995 284135 . - 0 ID=Phyra48138;Parent=Phyra48138;rank=2 scaffold_38 . exon 283995 284135 . - . ID=Phyra48138.2;Parent=Phyra48138;constitutive=1;rank=2 scaffold_38 . CDS 284212 284280 . - 0 ID=Phyra48138;Parent=Phyra48138;rank=1 scaffold_38 . exon 284212 284280 . - . ID=Phyra48138.1;Parent=Phyra48138;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 276328 277977 . - . ID=Phyra79244;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000062;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 276328 277977 . - . ID=Phyra79244;Parent=Phyra79244;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 276328 277977 . - 0 ID=Phyra79244;Parent=Phyra79244;rank=1 scaffold_38 . exon 276328 277977 . - . ID=Phyra79244.1;Parent=Phyra79244;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 278354 279082 . - . ID=Phyra79245;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000063;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 278354 279082 . - . ID=Phyra79245;Parent=Phyra79245;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 278354 279082 . - 0 ID=Phyra79245;Parent=Phyra79245;rank=1 scaffold_38 . exon 278354 279082 . - . ID=Phyra79245.1;Parent=Phyra79245;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 280199 281470 . + . ID=Phyra79246;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000064;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 280199 281470 . + . ID=Phyra79246;Parent=Phyra79246;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 280199 281470 . + 0 ID=Phyra79246;Parent=Phyra79246;rank=1 scaffold_38 . exon 280199 281470 . + . ID=Phyra79246.1;Parent=Phyra79246;constitutive=1;rank=1 scaffold_38 . exon 275318 275631 . + . ID=Phyra95340.6;Parent=Phyra95340;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_38 . exon 275714 275795 . + . ID=Phyra95340.7;Parent=Phyra95340;constitutive=1;ensembl_phase=2;rank=7 scaffold_38 . exon 275858 275909 . + . ID=Phyra95340.8;Parent=Phyra95340;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_38 . exon 275989 276059 . + . ID=Phyra95340.9;Parent=Phyra95340;constitutive=1;ensembl_phase=1;rank=9 scaffold_38 . biological_region 286244 286246 0.999 + . logic_name=eponine scaffold_38 . repeat_region 286907 286952 . ? . description=trf scaffold_38 . repeat_region 288082 288293 . ? . description=dust scaffold_38 . biological_region 291853 291858 0.999 + . logic_name=eponine scaffold_38 . biological_region 292024 292026 0.999 - . logic_name=eponine scaffold_38 . repeat_region 292523 292712 . ? . description=trf scaffold_38 . repeat_region 292524 292702 . ? . description=trf scaffold_38 . repeat_region 292530 292750 . ? . description=trf scaffold_38 . repeat_region 292809 293064 . ? . description=trf scaffold_38 . repeat_region 292809 293137 . ? . description=trf scaffold_38 . repeat_region 292821 293054 . ? . description=trf scaffold_38 ensembl protein_coding_gene 289490 291235 . - . ID=Phyra79250;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000068;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 289490 291235 . - . ID=Phyra79250;Parent=Phyra79250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 289490 290253 . - 0 ID=Phyra79250;Parent=Phyra79250;rank=2 scaffold_38 . exon 289490 290253 . - . ID=Phyra79250.2;Parent=Phyra79250;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 290332 291235 . - 0 ID=Phyra79250;Parent=Phyra79250;rank=1 scaffold_38 . exon 290332 291235 . - . ID=Phyra79250.1;Parent=Phyra79250;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 291988 298970 . + . ID=Phyra79251;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000069;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 291988 298970 . + . ID=Phyra79251;Parent=Phyra79251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 291988 292057 . + 0 ID=Phyra79251;Parent=Phyra79251;rank=1 scaffold_38 . exon 291988 292057 . + . ID=Phyra79251.1;Parent=Phyra79251;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 292174 293708 . + 0 ID=Phyra79251;Parent=Phyra79251;rank=2 scaffold_38 . exon 292174 293708 . + . ID=Phyra79251.2;Parent=Phyra79251;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 293792 294666 . + 0 ID=Phyra79251;Parent=Phyra79251;rank=3 scaffold_38 . exon 293792 294666 . + . ID=Phyra79251.3;Parent=Phyra79251;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_38 . CDS 294730 295076 . + 0 ID=Phyra79251;Parent=Phyra79251;rank=4 scaffold_38 . exon 294730 295076 . + . ID=Phyra79251.4;Parent=Phyra79251;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_38 . CDS 295192 295226 . + 0 ID=Phyra79251;Parent=Phyra79251;rank=5 scaffold_38 . CDS 295296 298469 . + 0 ID=Phyra79251;Parent=Phyra79251;rank=6 scaffold_38 . CDS 298548 298970 . + 0 ID=Phyra79251;Parent=Phyra79251;rank=7 scaffold_38 ensembl protein_coding_gene 285763 286394 . - . ID=Phyra95344;biotype=protein_coding;external_name=C_scaffold_38000033;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 285763 286394 . - . ID=Phyra95344;Parent=Phyra95344;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 285763 285812 . - 0 ID=Phyra95344;Parent=Phyra95344;rank=3 scaffold_38 . exon 285763 285812 . - . ID=Phyra95344.3;Parent=Phyra95344;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 285919 285928 . - 0 ID=Phyra95344;Parent=Phyra95344;rank=2 scaffold_38 . exon 285919 285928 . - . ID=Phyra95344.2;Parent=Phyra95344;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_38 . CDS 285984 286394 . - 0 ID=Phyra95344;Parent=Phyra95344;rank=1 scaffold_38 . exon 285984 286394 . - . ID=Phyra95344.1;Parent=Phyra95344;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 287420 289268 . + . ID=Phyra95345;biotype=protein_coding;external_name=C_scaffold_38000034;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 287420 289268 . + . ID=Phyra95345;Parent=Phyra95345;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 287420 288028 . + 0 ID=Phyra95345;Parent=Phyra95345;rank=1 scaffold_38 . exon 287420 288028 . + . ID=Phyra95345.1;Parent=Phyra95345;constitutive=1;rank=1 scaffold_38 . CDS 288345 289268 . + 0 ID=Phyra95345;Parent=Phyra95345;rank=2 scaffold_38 . exon 288345 289268 . + . ID=Phyra95345.2;Parent=Phyra95345;constitutive=1;rank=2 scaffold_38 . exon 295192 295226 . + . ID=Phyra79251.5;Parent=Phyra79251;constitutive=1;ensembl_phase=1;rank=5 scaffold_38 . exon 295296 298469 . + . ID=Phyra79251.6;Parent=Phyra79251;constitutive=1;rank=6 scaffold_38 . exon 298548 298970 . + . ID=Phyra79251.7;Parent=Phyra79251;constitutive=1;rank=7 scaffold_38 ensembl protein_coding_gene 299788 301450 . + . ID=Phyra79252;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000070;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 299788 301450 . + . ID=Phyra79252;Parent=Phyra79252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 299788 299888 . + 0 ID=Phyra79252;Parent=Phyra79252;rank=1 scaffold_38 . exon 299788 299888 . + . ID=Phyra79252.1;Parent=Phyra79252;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 299978 300039 . + 0 ID=Phyra79252;Parent=Phyra79252;rank=2 scaffold_38 . exon 299978 300039 . + . ID=Phyra79252.2;Parent=Phyra79252;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 300129 301176 . + 0 ID=Phyra79252;Parent=Phyra79252;rank=3 scaffold_38 . exon 300129 301176 . + . ID=Phyra79252.3;Parent=Phyra79252;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_38 . CDS 301250 301313 . + 0 ID=Phyra79252;Parent=Phyra79252;rank=4 scaffold_38 . exon 301250 301313 . + . ID=Phyra79252.4;Parent=Phyra79252;constitutive=1;ensembl_phase=2;rank=4 scaffold_38 . CDS 301397 301450 . + 0 ID=Phyra79252;Parent=Phyra79252;rank=5 scaffold_38 . exon 301397 301450 . + . ID=Phyra79252.5;Parent=Phyra79252;constitutive=1;rank=5 scaffold_38 ensembl protein_coding_gene 301727 305827 . - . ID=Phyra79253;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000071;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 301727 305827 . - . ID=Phyra79253;Parent=Phyra79253;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 301727 302111 . - 0 ID=Phyra79253;Parent=Phyra79253;rank=3 scaffold_38 . exon 301727 302111 . - . ID=Phyra79253.3;Parent=Phyra79253;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 302209 302348 . - 0 ID=Phyra79253;Parent=Phyra79253;rank=2 scaffold_38 . exon 302209 302348 . - . ID=Phyra79253.2;Parent=Phyra79253;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_38 . CDS 302420 305827 . - 0 ID=Phyra79253;Parent=Phyra79253;rank=1 scaffold_38 . exon 302420 305827 . - . ID=Phyra79253.1;Parent=Phyra79253;constitutive=1;rank=1 scaffold_38 . biological_region 305058 305061 0.999 + . logic_name=eponine scaffold_38 . biological_region 305638 305640 0.999 + . logic_name=eponine scaffold_38 . biological_region 305711 305716 0.999 + . logic_name=eponine scaffold_38 . biological_region 305736 305739 0.999 + . logic_name=eponine scaffold_38 . biological_region 305777 305779 0.999 - . logic_name=eponine scaffold_38 . biological_region 307392 307395 0.999 + . logic_name=eponine scaffold_38 . repeat_region 307595 307629 . ? . description=trf scaffold_38 . repeat_region 307599 307625 . ? . description=trf scaffold_38 . biological_region 307743 307745 0.999 + . logic_name=eponine scaffold_38 . repeat_region 308069 308134 . ? . description=trf scaffold_38 . repeat_region 308069 308134 . ? . description=trf scaffold_38 . repeat_region 308077 308136 . ? . description=dust scaffold_38 . repeat_region 310273 310411 . ? . description=trf scaffold_38 . repeat_region 310293 310397 . ? . description=trf scaffold_38 . repeat_region 310325 310397 . ? . description=trf scaffold_38 . repeat_region 310800 310822 . ? . description=trf scaffold_38 . repeat_region 310800 310822 . ? . description=dust scaffold_38 . repeat_region 312618 312634 . ? . description=dust scaffold_38 ensembl protein_coding_gene 306008 308235 . + . ID=Phyra79254;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000072;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 306008 308235 . + . ID=Phyra79254;Parent=Phyra79254;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 306008 306325 . + 0 ID=Phyra79254;Parent=Phyra79254;rank=1 scaffold_38 . exon 306008 306325 . + . ID=Phyra79254.1;Parent=Phyra79254;constitutive=1;rank=1 scaffold_38 . CDS 306403 306501 . + 0 ID=Phyra79254;Parent=Phyra79254;rank=2 scaffold_38 . exon 306403 306501 . + . ID=Phyra79254.2;Parent=Phyra79254;constitutive=1;rank=2 scaffold_38 . CDS 306557 306741 . + 0 ID=Phyra79254;Parent=Phyra79254;rank=3 scaffold_38 . exon 306557 306741 . + . ID=Phyra79254.3;Parent=Phyra79254;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_38 . CDS 306852 306930 . + 0 ID=Phyra79254;Parent=Phyra79254;rank=4 scaffold_38 . exon 306852 306930 . + . ID=Phyra79254.4;Parent=Phyra79254;constitutive=1;ensembl_phase=2;rank=4 scaffold_38 . CDS 307069 307282 . + 0 ID=Phyra79254;Parent=Phyra79254;rank=5 scaffold_38 . exon 307069 307282 . + . ID=Phyra79254.5;Parent=Phyra79254;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_38 . CDS 307386 307644 . + 0 ID=Phyra79254;Parent=Phyra79254;rank=6 scaffold_38 . exon 307386 307644 . + . ID=Phyra79254.6;Parent=Phyra79254;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_38 . CDS 307770 307968 . + 0 ID=Phyra79254;Parent=Phyra79254;rank=7 scaffold_38 . exon 307770 307968 . + . ID=Phyra79254.7;Parent=Phyra79254;constitutive=1;ensembl_phase=2;rank=7 scaffold_38 . CDS 307999 308235 . + 0 ID=Phyra79254;Parent=Phyra79254;rank=8 scaffold_38 . exon 307999 308235 . + . ID=Phyra79254.8;Parent=Phyra79254;constitutive=1;rank=8 scaffold_38 ensembl protein_coding_gene 309138 310445 . - . ID=Phyra79255;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000073;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 309138 310445 . - . ID=Phyra79255;Parent=Phyra79255;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 309138 310445 . - 0 ID=Phyra79255;Parent=Phyra79255;rank=1 scaffold_38 . exon 309138 310445 . - . ID=Phyra79255.1;Parent=Phyra79255;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 313046 315149 . - . ID=Phyra79256;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000074;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 313046 315149 . - . ID=Phyra79256;Parent=Phyra79256;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 313046 313135 . - 0 ID=Phyra79256;Parent=Phyra79256;rank=8 scaffold_38 . exon 313046 313135 . - . ID=Phyra79256.8;Parent=Phyra79256;constitutive=1;rank=8 scaffold_38 . CDS 313254 313313 . - 0 ID=Phyra79256;Parent=Phyra79256;rank=7 scaffold_38 . exon 313254 313313 . - . ID=Phyra79256.7;Parent=Phyra79256;constitutive=1;rank=7 scaffold_38 . CDS 313426 313549 . - 0 ID=Phyra79256;Parent=Phyra79256;rank=6 scaffold_38 . exon 313426 313549 . - . ID=Phyra79256.6;Parent=Phyra79256;constitutive=1;ensembl_phase=2;rank=6 scaffold_38 . CDS 313570 313639 . - 0 ID=Phyra79256;Parent=Phyra79256;rank=5 scaffold_38 . exon 313570 313639 . - . ID=Phyra79256.5;Parent=Phyra79256;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_38 . CDS 313666 314210 . - 0 ID=Phyra79256;Parent=Phyra79256;rank=4 scaffold_38 . exon 313666 314210 . - . ID=Phyra79256.4;Parent=Phyra79256;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_38 . CDS 314354 314585 . - 0 ID=Phyra79256;Parent=Phyra79256;rank=3 scaffold_38 . exon 314354 314585 . - . ID=Phyra79256.3;Parent=Phyra79256;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_38 . CDS 314605 314932 . - 0 ID=Phyra79256;Parent=Phyra79256;rank=2 scaffold_38 . CDS 314967 315149 . - 0 ID=Phyra79256;Parent=Phyra79256;rank=1 scaffold_38 ensembl protein_coding_gene 323988 325079 . + . ID=Phyra48145;biotype=protein_coding;external_name=gwEuk.38.31.1;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 323988 325079 . + . ID=Phyra48145;Parent=Phyra48145;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 323988 324661 . + 0 ID=Phyra48145;Parent=Phyra48145;rank=1 scaffold_38 . exon 323988 324661 . + . ID=Phyra48145.1;Parent=Phyra48145;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 324737 324881 . + 0 ID=Phyra48145;Parent=Phyra48145;rank=2 scaffold_38 . CDS 324939 325079 . + 0 ID=Phyra48145;Parent=Phyra48145;rank=3 scaffold_38 . exon 314605 314932 . - . ID=Phyra79256.2;Parent=Phyra79256;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_38 . exon 314967 315149 . - . ID=Phyra79256.1;Parent=Phyra79256;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 315890 319447 . - . ID=Phyra79257;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000075;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 315890 319447 . - . ID=Phyra79257;Parent=Phyra79257;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 315890 319447 . - 0 ID=Phyra79257;Parent=Phyra79257;rank=1 scaffold_38 . exon 315890 319447 . - . ID=Phyra79257.1;Parent=Phyra79257;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 319936 321360 . - . ID=Phyra79258;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000076;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 319936 321360 . - . ID=Phyra79258;Parent=Phyra79258;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 319936 320180 . - 0 ID=Phyra79258;Parent=Phyra79258;rank=6 scaffold_38 . exon 319936 320180 . - . ID=Phyra79258.6;Parent=Phyra79258;constitutive=1;ensembl_phase=1;rank=6 scaffold_38 . CDS 320240 320420 . - 0 ID=Phyra79258;Parent=Phyra79258;rank=5 scaffold_38 . exon 320240 320420 . - . ID=Phyra79258.5;Parent=Phyra79258;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_38 . CDS 320487 320605 . - 0 ID=Phyra79258;Parent=Phyra79258;rank=4 scaffold_38 . exon 320487 320605 . - . ID=Phyra79258.4;Parent=Phyra79258;constitutive=1;ensembl_phase=1;rank=4 scaffold_38 . CDS 320674 320798 . - 0 ID=Phyra79258;Parent=Phyra79258;rank=3 scaffold_38 . exon 320674 320798 . - . ID=Phyra79258.3;Parent=Phyra79258;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 320867 320945 . - 0 ID=Phyra79258;Parent=Phyra79258;rank=2 scaffold_38 . exon 320867 320945 . - . ID=Phyra79258.2;Parent=Phyra79258;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_38 . CDS 321006 321360 . - 0 ID=Phyra79258;Parent=Phyra79258;rank=1 scaffold_38 . exon 321006 321360 . - . ID=Phyra79258.1;Parent=Phyra79258;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 321706 323239 . + . ID=Phyra79259;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000077;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 321706 323239 . + . ID=Phyra79259;Parent=Phyra79259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 321706 322110 . + 0 ID=Phyra79259;Parent=Phyra79259;rank=1 scaffold_38 . exon 321706 322110 . + . ID=Phyra79259.1;Parent=Phyra79259;constitutive=1;rank=1 scaffold_38 . CDS 322171 322305 . + 0 ID=Phyra79259;Parent=Phyra79259;rank=2 scaffold_38 . exon 322171 322305 . + . ID=Phyra79259.2;Parent=Phyra79259;constitutive=1;rank=2 scaffold_38 . CDS 322370 322435 . + 0 ID=Phyra79259;Parent=Phyra79259;rank=3 scaffold_38 . exon 322370 322435 . + . ID=Phyra79259.3;Parent=Phyra79259;constitutive=1;rank=3 scaffold_38 . CDS 322502 322761 . + 0 ID=Phyra79259;Parent=Phyra79259;rank=4 scaffold_38 . exon 322502 322761 . + . ID=Phyra79259.4;Parent=Phyra79259;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_38 . CDS 322837 322891 . + 0 ID=Phyra79259;Parent=Phyra79259;rank=5 scaffold_38 . exon 322837 322891 . + . ID=Phyra79259.5;Parent=Phyra79259;constitutive=1;ensembl_phase=2;rank=5 scaffold_38 . CDS 322973 323239 . + 0 ID=Phyra79259;Parent=Phyra79259;rank=6 scaffold_38 . exon 322973 323239 . + . ID=Phyra79259.6;Parent=Phyra79259;constitutive=1;rank=6 scaffold_38 . biological_region 325453 325455 0.999 - . logic_name=eponine scaffold_38 . biological_region 328560 328561 0.999 + . logic_name=eponine scaffold_38 . biological_region 329368 329371 0.999 + . logic_name=eponine scaffold_38 . biological_region 330063 330067 0.999 + . logic_name=eponine scaffold_38 . biological_region 330141 330143 0.999 + . logic_name=eponine scaffold_38 . biological_region 330181 330182 0.999 - . logic_name=eponine scaffold_38 . biological_region 330242 330244 0.999 + . logic_name=eponine scaffold_38 . biological_region 330335 330341 0.999 + . logic_name=eponine scaffold_38 . biological_region 330382 330385 0.999 - . logic_name=eponine scaffold_38 . biological_region 331156 331156 0.999 + . logic_name=eponine scaffold_38 . biological_region 332014 332014 0.999 - . logic_name=eponine scaffold_38 . biological_region 332049 332052 0.999 - . logic_name=eponine scaffold_38 . biological_region 332572 332573 0.999 + . logic_name=eponine scaffold_38 . biological_region 333409 333411 0.999 + . logic_name=eponine scaffold_38 . biological_region 333500 333503 0.999 - . logic_name=eponine scaffold_38 . exon 324737 324881 . + . ID=Phyra48145.2;Parent=Phyra48145;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . exon 324939 325079 . + . ID=Phyra48145.3;Parent=Phyra48145;constitutive=1;rank=3 scaffold_38 ensembl protein_coding_gene 333334 335750 . + . ID=Phyra71692;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_38000006;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 333334 335750 . + . ID=Phyra71692;Parent=Phyra71692;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 333334 333435 . + 0 ID=Phyra71692;Parent=Phyra71692;rank=1 scaffold_38 . exon 333334 333435 . + . ID=Phyra71692.1;Parent=Phyra71692;constitutive=1;rank=1 scaffold_38 . CDS 333514 335263 . + 0 ID=Phyra71692;Parent=Phyra71692;rank=2 scaffold_38 . exon 333514 335263 . + . ID=Phyra71692.2;Parent=Phyra71692;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_38 . CDS 335704 335750 . + 0 ID=Phyra71692;Parent=Phyra71692;rank=3 scaffold_38 ensembl protein_coding_gene 326957 328103 . - . ID=Phyra79262;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000080;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 326957 328103 . - . ID=Phyra79262;Parent=Phyra79262;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 326957 327418 . - 0 ID=Phyra79262;Parent=Phyra79262;rank=4 scaffold_38 . exon 326957 327418 . - . ID=Phyra79262.4;Parent=Phyra79262;constitutive=1;rank=4 scaffold_38 . CDS 327496 327831 . - 0 ID=Phyra79262;Parent=Phyra79262;rank=3 scaffold_38 . exon 327496 327831 . - . ID=Phyra79262.3;Parent=Phyra79262;constitutive=1;rank=3 scaffold_38 . CDS 327928 327968 . - 0 ID=Phyra79262;Parent=Phyra79262;rank=2 scaffold_38 . exon 327928 327968 . - . ID=Phyra79262.2;Parent=Phyra79262;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 328025 328103 . - 0 ID=Phyra79262;Parent=Phyra79262;rank=1 scaffold_38 . exon 328025 328103 . - . ID=Phyra79262.1;Parent=Phyra79262;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 330001 330996 . - . ID=Phyra79264;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000082;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 330001 330996 . - . ID=Phyra79264;Parent=Phyra79264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 330001 330996 . - 0 ID=Phyra79264;Parent=Phyra79264;rank=1 scaffold_38 . exon 330001 330996 . - . ID=Phyra79264.1;Parent=Phyra79264;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 331307 333013 . + . ID=Phyra79265;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000083;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 331307 333013 . + . ID=Phyra79265;Parent=Phyra79265;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 331307 333013 . + 0 ID=Phyra79265;Parent=Phyra79265;rank=1 scaffold_38 . exon 331307 333013 . + . ID=Phyra79265.1;Parent=Phyra79265;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 325325 326661 . + . ID=Phyra95347;biotype=protein_coding;external_name=C_scaffold_38000036;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 325325 326661 . + . ID=Phyra95347;Parent=Phyra95347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 325325 325707 . + 0 ID=Phyra95347;Parent=Phyra95347;rank=1 scaffold_38 . exon 325325 325707 . + . ID=Phyra95347.1;Parent=Phyra95347;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 325775 325988 . + 0 ID=Phyra95347;Parent=Phyra95347;rank=2 scaffold_38 . exon 325775 325988 . + . ID=Phyra95347.2;Parent=Phyra95347;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 326050 326106 . + 0 ID=Phyra95347;Parent=Phyra95347;rank=3 scaffold_38 . exon 326050 326106 . + . ID=Phyra95347.3;Parent=Phyra95347;constitutive=1;rank=3 scaffold_38 . CDS 326171 326483 . + 0 ID=Phyra95347;Parent=Phyra95347;rank=4 scaffold_38 . exon 326171 326483 . + . ID=Phyra95347.4;Parent=Phyra95347;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_38 . CDS 326558 326661 . + 0 ID=Phyra95347;Parent=Phyra95347;rank=5 scaffold_38 . exon 326558 326661 . + . ID=Phyra95347.5;Parent=Phyra95347;constitutive=1;ensembl_phase=1;rank=5 scaffold_38 ensembl protein_coding_gene 328260 329495 . - . ID=Phyra95351;biotype=protein_coding;external_name=C_scaffold_38000040;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 328260 329495 . - . ID=Phyra95351;Parent=Phyra95351;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 328260 328857 . - 0 ID=Phyra95351;Parent=Phyra95351;rank=4 scaffold_38 . exon 328260 328857 . - . ID=Phyra95351.4;Parent=Phyra95351;constitutive=1;ensembl_phase=2;rank=4 scaffold_38 . CDS 328921 329011 . - 0 ID=Phyra95351;Parent=Phyra95351;rank=3 scaffold_38 . exon 328921 329011 . - . ID=Phyra95351.3;Parent=Phyra95351;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_38 . CDS 329103 329230 . - 0 ID=Phyra95351;Parent=Phyra95351;rank=2 scaffold_38 . exon 329103 329230 . - . ID=Phyra95351.2;Parent=Phyra95351;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 329302 329495 . - 0 ID=Phyra95351;Parent=Phyra95351;rank=1 scaffold_38 . exon 329302 329495 . - . ID=Phyra95351.1;Parent=Phyra95351;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . repeat_region 340630 340650 . ? . description=dust scaffold_38 . repeat_region 341903 341916 . ? . description=dust scaffold_38 . exon 335704 335750 . + . ID=Phyra71692.3;Parent=Phyra71692;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 ensembl protein_coding_gene 340413 341409 . - . ID=Phyra71693;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_38000007;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 340413 341409 . - . ID=Phyra71693;Parent=Phyra71693;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 340413 340627 . - 0 ID=Phyra71693;Parent=Phyra71693;rank=5 scaffold_38 . exon 340413 340627 . - . ID=Phyra71693.5;Parent=Phyra71693;constitutive=1;ensembl_phase=1;rank=5 scaffold_38 . CDS 340742 340841 . - 0 ID=Phyra71693;Parent=Phyra71693;rank=4 scaffold_38 . exon 340742 340841 . - . ID=Phyra71693.4;Parent=Phyra71693;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_38 . CDS 340908 340979 . - 0 ID=Phyra71693;Parent=Phyra71693;rank=3 scaffold_38 . exon 340908 340979 . - . ID=Phyra71693.3;Parent=Phyra71693;constitutive=1;rank=3 scaffold_38 . CDS 341047 341144 . - 0 ID=Phyra71693;Parent=Phyra71693;rank=2 scaffold_38 . exon 341047 341144 . - . ID=Phyra71693.2;Parent=Phyra71693;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 341232 341409 . - 0 ID=Phyra71693;Parent=Phyra71693;rank=1 scaffold_38 . exon 341232 341409 . - . ID=Phyra71693.1;Parent=Phyra71693;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 336434 339335 . - . ID=Phyra79267;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000085;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 336434 339335 . - . ID=Phyra79267;Parent=Phyra79267;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 336434 337185 . - 0 ID=Phyra79267;Parent=Phyra79267;rank=7 scaffold_38 . exon 336434 337185 . - . ID=Phyra79267.7;Parent=Phyra79267;constitutive=1;ensembl_phase=1;rank=7 scaffold_38 . CDS 337228 337247 . - 0 ID=Phyra79267;Parent=Phyra79267;rank=6 scaffold_38 . exon 337228 337247 . - . ID=Phyra79267.6;Parent=Phyra79267;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_38 . CDS 337315 337442 . - 0 ID=Phyra79267;Parent=Phyra79267;rank=5 scaffold_38 . exon 337315 337442 . - . ID=Phyra79267.5;Parent=Phyra79267;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_38 . CDS 337511 337795 . - 0 ID=Phyra79267;Parent=Phyra79267;rank=4 scaffold_38 . exon 337511 337795 . - . ID=Phyra79267.4;Parent=Phyra79267;constitutive=1;rank=4 scaffold_38 . CDS 337857 339041 . - 0 ID=Phyra79267;Parent=Phyra79267;rank=3 scaffold_38 . exon 337857 339041 . - . ID=Phyra79267.3;Parent=Phyra79267;constitutive=1;rank=3 scaffold_38 . CDS 339105 339192 . - 0 ID=Phyra79267;Parent=Phyra79267;rank=2 scaffold_38 . exon 339105 339192 . - . ID=Phyra79267.2;Parent=Phyra79267;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 339331 339335 . - 0 ID=Phyra79267;Parent=Phyra79267;rank=1 scaffold_38 . exon 339331 339335 . - . ID=Phyra79267.1;Parent=Phyra79267;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 ensembl protein_coding_gene 342698 343862 . - . ID=Phyra79269;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000087;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 342698 343862 . - . ID=Phyra79269;Parent=Phyra79269;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 342698 343035 . - 0 ID=Phyra79269;Parent=Phyra79269;rank=4 scaffold_38 . exon 342698 343035 . - . ID=Phyra79269.4;Parent=Phyra79269;constitutive=1;ensembl_phase=1;rank=4 scaffold_38 . CDS 343101 343446 . - 0 ID=Phyra79269;Parent=Phyra79269;rank=3 scaffold_38 . exon 343101 343446 . - . ID=Phyra79269.3;Parent=Phyra79269;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_38 . CDS 343521 343607 . - 0 ID=Phyra79269;Parent=Phyra79269;rank=2 scaffold_38 . exon 343521 343607 . - . ID=Phyra79269.2;Parent=Phyra79269;constitutive=1;rank=2 scaffold_38 . CDS 343698 343862 . - 0 ID=Phyra79269;Parent=Phyra79269;rank=1 scaffold_38 . exon 343698 343862 . - . ID=Phyra79269.1;Parent=Phyra79269;constitutive=1;rank=1 scaffold_38 . biological_region 345664 345664 0.999 + . logic_name=eponine scaffold_38 . biological_region 346188 346190 0.999 - . logic_name=eponine scaffold_38 . repeat_region 350402 350430 . ? . description=trf scaffold_38 . repeat_region 350405 350443 . ? . description=trf scaffold_38 . biological_region 350770 350770 0.999 + . logic_name=eponine scaffold_38 ensembl protein_coding_gene 345043 346788 . + . ID=Phyra79270;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000088;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 345043 346788 . + . ID=Phyra79270;Parent=Phyra79270;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 345043 346788 . + 0 ID=Phyra79270;Parent=Phyra79270;rank=1 scaffold_38 . exon 345043 346788 . + . ID=Phyra79270.1;Parent=Phyra79270;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 350153 351955 . + . ID=Phyra79272;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000090;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 350153 351955 . + . ID=Phyra79272;Parent=Phyra79272;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 350153 351955 . + 0 ID=Phyra79272;Parent=Phyra79272;rank=1 scaffold_38 . exon 350153 351955 . + . ID=Phyra79272.1;Parent=Phyra79272;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 346954 349659 . - . ID=Phyra95354;biotype=protein_coding;external_name=C_scaffold_38000043;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 346954 349659 . - . ID=Phyra95354;Parent=Phyra95354;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 346954 347016 . - 0 ID=Phyra95354;Parent=Phyra95354;rank=13 scaffold_38 . exon 346954 347016 . - . ID=Phyra95354.13;Parent=Phyra95354;constitutive=1;rank=13 scaffold_38 . CDS 347104 347331 . - 0 ID=Phyra95354;Parent=Phyra95354;rank=12 scaffold_38 . exon 347104 347331 . - . ID=Phyra95354.12;Parent=Phyra95354;constitutive=1;rank=12 scaffold_38 . CDS 347398 347508 . - 0 ID=Phyra95354;Parent=Phyra95354;rank=11 scaffold_38 . exon 347398 347508 . - . ID=Phyra95354.11;Parent=Phyra95354;constitutive=1;rank=11 scaffold_38 . CDS 347743 347800 . - 0 ID=Phyra95354;Parent=Phyra95354;rank=10 scaffold_38 . exon 347743 347800 . - . ID=Phyra95354.10;Parent=Phyra95354;constitutive=1;ensembl_phase=2;rank=10 scaffold_38 . CDS 347880 347968 . - 0 ID=Phyra95354;Parent=Phyra95354;rank=9 scaffold_38 . exon 347880 347968 . - . ID=Phyra95354.9;Parent=Phyra95354;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_38 . CDS 348039 348197 . - 0 ID=Phyra95354;Parent=Phyra95354;rank=8 scaffold_38 . exon 348039 348197 . - . ID=Phyra95354.8;Parent=Phyra95354;constitutive=1;rank=8 scaffold_38 . CDS 348292 348474 . - 0 ID=Phyra95354;Parent=Phyra95354;rank=7 scaffold_38 . exon 348292 348474 . - . ID=Phyra95354.7;Parent=Phyra95354;constitutive=1;rank=7 scaffold_38 . CDS 348545 348593 . - 0 ID=Phyra95354;Parent=Phyra95354;rank=6 scaffold_38 . exon 348545 348593 . - . ID=Phyra95354.6;Parent=Phyra95354;constitutive=1;ensembl_phase=2;rank=6 scaffold_38 . CDS 348682 348797 . - 0 ID=Phyra95354;Parent=Phyra95354;rank=5 scaffold_38 . exon 348682 348797 . - . ID=Phyra95354.5;Parent=Phyra95354;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_38 . CDS 348948 348971 . - 0 ID=Phyra95354;Parent=Phyra95354;rank=4 scaffold_38 . exon 348948 348971 . - . ID=Phyra95354.4;Parent=Phyra95354;constitutive=1;rank=4 scaffold_38 . CDS 349051 349230 . - 0 ID=Phyra95354;Parent=Phyra95354;rank=3 scaffold_38 . exon 349051 349230 . - . ID=Phyra95354.3;Parent=Phyra95354;constitutive=1;rank=3 scaffold_38 . CDS 349296 349571 . - 0 ID=Phyra95354;Parent=Phyra95354;rank=2 scaffold_38 . exon 349296 349571 . - . ID=Phyra95354.2;Parent=Phyra95354;constitutive=1;rank=2 scaffold_38 . CDS 349624 349659 . - 0 ID=Phyra95354;Parent=Phyra95354;rank=1 scaffold_38 . exon 349624 349659 . - . ID=Phyra95354.1;Parent=Phyra95354;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 352044 353638 . - . ID=Phyra95358;biotype=protein_coding;external_name=C_scaffold_38000047;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 352044 353638 . - . ID=Phyra95358;Parent=Phyra95358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 352044 352171 . - 0 ID=Phyra95358;Parent=Phyra95358;rank=6 scaffold_38 . exon 352044 352171 . - . ID=Phyra95358.6;Parent=Phyra95358;constitutive=1;ensembl_phase=1;rank=6 scaffold_38 . CDS 352244 352487 . - 0 ID=Phyra95358;Parent=Phyra95358;rank=5 scaffold_38 . exon 352244 352487 . - . ID=Phyra95358.5;Parent=Phyra95358;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_38 . CDS 352546 352747 . - 0 ID=Phyra95358;Parent=Phyra95358;rank=4 scaffold_38 . exon 352546 352747 . - . ID=Phyra95358.4;Parent=Phyra95358;constitutive=1;ensembl_phase=2;rank=4 scaffold_38 . CDS 352821 353144 . - 0 ID=Phyra95358;Parent=Phyra95358;rank=3 scaffold_38 . exon 352821 353144 . - . ID=Phyra95358.3;Parent=Phyra95358;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_38 . CDS 353225 353403 . - 0 ID=Phyra95358;Parent=Phyra95358;rank=2 scaffold_38 . exon 353225 353403 . - . ID=Phyra95358.2;Parent=Phyra95358;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_38 . CDS 353480 353638 . - 0 ID=Phyra95358;Parent=Phyra95358;rank=1 scaffold_38 . exon 353480 353638 . - . ID=Phyra95358.1;Parent=Phyra95358;constitutive=1;rank=1 scaffold_38 . repeat_region 356608 356615 . ? . description=dust scaffold_38 . repeat_region 358373 358408 . ? . description=dust scaffold_38 ensembl protein_coding_gene 357773 358266 . - . ID=Phyra79273;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000091;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 357773 358266 . - . ID=Phyra79273;Parent=Phyra79273;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 357773 357994 . - 0 ID=Phyra79273;Parent=Phyra79273;rank=2 scaffold_38 . exon 357773 357994 . - . ID=Phyra79273.2;Parent=Phyra79273;constitutive=1;rank=2 scaffold_38 . CDS 358072 358266 . - 0 ID=Phyra79273;Parent=Phyra79273;rank=1 scaffold_38 . exon 358072 358266 . - . ID=Phyra79273.1;Parent=Phyra79273;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 358521 361437 . + . ID=Phyra79274;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000092;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 358521 361437 . + . ID=Phyra79274;Parent=Phyra79274;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 358521 358599 . + 0 ID=Phyra79274;Parent=Phyra79274;rank=1 scaffold_38 . exon 358521 358599 . + . ID=Phyra79274.1;Parent=Phyra79274;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 358667 358776 . + 0 ID=Phyra79274;Parent=Phyra79274;rank=2 scaffold_38 . exon 358667 358776 . + . ID=Phyra79274.2;Parent=Phyra79274;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 358844 358919 . + 0 ID=Phyra79274;Parent=Phyra79274;rank=3 scaffold_38 . exon 358844 358919 . + . ID=Phyra79274.3;Parent=Phyra79274;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_38 . CDS 358994 359061 . + 0 ID=Phyra79274;Parent=Phyra79274;rank=4 scaffold_38 . exon 358994 359061 . + . ID=Phyra79274.4;Parent=Phyra79274;constitutive=1;ensembl_phase=1;rank=4 scaffold_38 . CDS 359140 360368 . + 0 ID=Phyra79274;Parent=Phyra79274;rank=5 scaffold_38 . exon 359140 360368 . + . ID=Phyra79274.5;Parent=Phyra79274;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_38 . CDS 360436 360700 . + 0 ID=Phyra79274;Parent=Phyra79274;rank=6 scaffold_38 . exon 360436 360700 . + . ID=Phyra79274.6;Parent=Phyra79274;constitutive=1;ensembl_phase=2;rank=6 scaffold_38 . CDS 360782 361102 . + 0 ID=Phyra79274;Parent=Phyra79274;rank=7 scaffold_38 . exon 360782 361102 . + . ID=Phyra79274.7;Parent=Phyra79274;constitutive=1;rank=7 scaffold_38 . CDS 361183 361437 . + 0 ID=Phyra79274;Parent=Phyra79274;rank=8 scaffold_38 . exon 361183 361437 . + . ID=Phyra79274.8;Parent=Phyra79274;constitutive=1;rank=8 scaffold_38 ensembl protein_coding_gene 361664 366211 . - . ID=Phyra95360;biotype=protein_coding;external_name=C_scaffold_38000049;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 361664 366211 . - . ID=Phyra95360;Parent=Phyra95360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 361664 362026 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=21 scaffold_38 . exon 361664 362026 . - . ID=Phyra95360.21;Parent=Phyra95360;constitutive=1;rank=21 scaffold_38 . CDS 362097 362186 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=20 scaffold_38 . exon 362097 362186 . - . ID=Phyra95360.20;Parent=Phyra95360;constitutive=1;rank=20 scaffold_38 . CDS 362264 362377 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=19 scaffold_38 . exon 362264 362377 . - . ID=Phyra95360.19;Parent=Phyra95360;constitutive=1;rank=19 scaffold_38 . CDS 362440 362758 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=18 scaffold_38 . exon 362440 362758 . - . ID=Phyra95360.18;Parent=Phyra95360;constitutive=1;ensembl_phase=2;rank=18 scaffold_38 . CDS 362819 362914 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=17 scaffold_38 . exon 362819 362914 . - . ID=Phyra95360.17;Parent=Phyra95360;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=17 scaffold_38 . CDS 363051 363106 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=16 scaffold_38 . exon 363051 363106 . - . ID=Phyra95360.16;Parent=Phyra95360;constitutive=1;ensembl_end_phase=2;rank=16 scaffold_38 . CDS 363176 363340 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=15 scaffold_38 . exon 363176 363340 . - . ID=Phyra95360.15;Parent=Phyra95360;constitutive=1;rank=15 scaffold_38 . CDS 363416 363570 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=14 scaffold_38 . exon 363416 363570 . - . ID=Phyra95360.14;Parent=Phyra95360;constitutive=1;ensembl_phase=1;rank=14 scaffold_38 . CDS 363642 363825 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=13 scaffold_38 . CDS 363895 363961 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=12 scaffold_38 . CDS 364124 364152 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=11 scaffold_38 . CDS 364230 364330 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=10 scaffold_38 . CDS 364376 364454 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=9 scaffold_38 . CDS 364527 364619 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=8 scaffold_38 . CDS 364712 364825 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=7 scaffold_38 . CDS 364901 364964 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=6 scaffold_38 . CDS 365044 365123 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=5 scaffold_38 . CDS 365211 365315 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=4 scaffold_38 . CDS 365364 365495 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=3 scaffold_38 . CDS 365558 365929 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=2 scaffold_38 . CDS 366002 366211 . - 0 ID=Phyra95360;Parent=Phyra95360;rank=1 scaffold_38 . biological_region 366437 366441 0.999 + . logic_name=eponine scaffold_38 . biological_region 370544 370546 0.999 + . logic_name=eponine scaffold_38 ensembl protein_coding_gene 368148 369912 . - . ID=Phyra48178;biotype=protein_coding;external_name=gwEuk.38.64.1;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 368148 369912 . - . ID=Phyra48178;Parent=Phyra48178;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 368148 368322 . - 0 ID=Phyra48178;Parent=Phyra48178;rank=5 scaffold_38 . exon 368148 368322 . - . ID=Phyra48178.5;Parent=Phyra48178;constitutive=1;ensembl_phase=2;rank=5 scaffold_38 . CDS 368390 369158 . - 0 ID=Phyra48178;Parent=Phyra48178;rank=4 scaffold_38 . exon 368390 369158 . - . ID=Phyra48178.4;Parent=Phyra48178;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_38 . CDS 369237 369462 . - 0 ID=Phyra48178;Parent=Phyra48178;rank=3 scaffold_38 . exon 369237 369462 . - . ID=Phyra48178.3;Parent=Phyra48178;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_38 . CDS 369534 369733 . - 0 ID=Phyra48178;Parent=Phyra48178;rank=2 scaffold_38 . exon 369534 369733 . - . ID=Phyra48178.2;Parent=Phyra48178;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 369813 369912 . - 0 ID=Phyra48178;Parent=Phyra48178;rank=1 scaffold_38 . exon 369813 369912 . - . ID=Phyra48178.1;Parent=Phyra48178;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl pseudogene 373201 375729 . + . ID=Phyra48183;biotype=pseudogene;external_name=gwEuk.38.69.1;logic_name=jgi_phyra1 scaffold_38 ensembl pseudogene 373201 375729 . + . ID=Phyra48183;Parent=Phyra48183;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_38 . exon 373201 373260 . + . ID=Phyra48183.1;Parent=Phyra48183;constitutive=1;rank=1 scaffold_38 . exon 373324 373489 . + . ID=Phyra48183.2;Parent=Phyra48183;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_38 ensembl protein_coding_gene 366334 367432 . + . ID=Phyra79276;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000094;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 366334 367432 . + . ID=Phyra79276;Parent=Phyra79276;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 366334 366941 . + 0 ID=Phyra79276;Parent=Phyra79276;rank=1 scaffold_38 . exon 366334 366941 . + . ID=Phyra79276.1;Parent=Phyra79276;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 367190 367218 . + 0 ID=Phyra79276;Parent=Phyra79276;rank=2 scaffold_38 . exon 367190 367218 . + . ID=Phyra79276.2;Parent=Phyra79276;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 367404 367432 . + 0 ID=Phyra79276;Parent=Phyra79276;rank=3 scaffold_38 . exon 367404 367432 . + . ID=Phyra79276.3;Parent=Phyra79276;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . exon 363642 363825 . - . ID=Phyra95360.13;Parent=Phyra95360;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_38 . exon 363895 363961 . - . ID=Phyra95360.12;Parent=Phyra95360;constitutive=1;ensembl_phase=2;rank=12 scaffold_38 . exon 364124 364152 . - . ID=Phyra95360.11;Parent=Phyra95360;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_38 . exon 364230 364330 . - . ID=Phyra95360.10;Parent=Phyra95360;constitutive=1;ensembl_phase=1;rank=10 scaffold_38 . exon 364376 364454 . - . ID=Phyra95360.9;Parent=Phyra95360;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_38 . exon 364527 364619 . - . ID=Phyra95360.8;Parent=Phyra95360;constitutive=1;rank=8 scaffold_38 . exon 364712 364825 . - . ID=Phyra95360.7;Parent=Phyra95360;constitutive=1;rank=7 scaffold_38 . exon 364901 364964 . - . ID=Phyra95360.6;Parent=Phyra95360;constitutive=1;ensembl_phase=2;rank=6 scaffold_38 . exon 365044 365123 . - . ID=Phyra95360.5;Parent=Phyra95360;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_38 . exon 365211 365315 . - . ID=Phyra95360.4;Parent=Phyra95360;constitutive=1;rank=4 scaffold_38 . exon 365364 365495 . - . ID=Phyra95360.3;Parent=Phyra95360;constitutive=1;rank=3 scaffold_38 . exon 365558 365929 . - . ID=Phyra95360.2;Parent=Phyra95360;constitutive=1;rank=2 scaffold_38 . exon 366002 366211 . - . ID=Phyra95360.1;Parent=Phyra95360;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 370480 372190 . + . ID=Phyra95362;biotype=protein_coding;external_name=C_scaffold_38000051;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 370480 372190 . + . ID=Phyra95362;Parent=Phyra95362;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 370480 370701 . + 0 ID=Phyra95362;Parent=Phyra95362;rank=1 scaffold_38 . exon 370480 370701 . + . ID=Phyra95362.1;Parent=Phyra95362;constitutive=1;rank=1 scaffold_38 . CDS 370779 370931 . + 0 ID=Phyra95362;Parent=Phyra95362;rank=2 scaffold_38 . exon 370779 370931 . + . ID=Phyra95362.2;Parent=Phyra95362;constitutive=1;rank=2 scaffold_38 . CDS 370991 371128 . + 0 ID=Phyra95362;Parent=Phyra95362;rank=3 scaffold_38 . exon 370991 371128 . + . ID=Phyra95362.3;Parent=Phyra95362;constitutive=1;rank=3 scaffold_38 . CDS 371234 371361 . + 0 ID=Phyra95362;Parent=Phyra95362;rank=4 scaffold_38 . exon 371234 371361 . + . ID=Phyra95362.4;Parent=Phyra95362;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_38 . CDS 371479 371671 . + 0 ID=Phyra95362;Parent=Phyra95362;rank=5 scaffold_38 . exon 371479 371671 . + . ID=Phyra95362.5;Parent=Phyra95362;constitutive=1;ensembl_phase=2;rank=5 scaffold_38 . CDS 371789 372190 . + 0 ID=Phyra95362;Parent=Phyra95362;rank=6 scaffold_38 . exon 371789 372190 . + . ID=Phyra95362.6;Parent=Phyra95362;constitutive=1;rank=6 scaffold_38 . repeat_region 378322 378330 . ? . description=dust scaffold_38 . repeat_region 379310 379317 . ? . description=dust scaffold_38 . exon 373548 373640 . + . ID=Phyra48183.3;Parent=Phyra48183;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_38 . exon 373710 373847 . + . ID=Phyra48183.4;Parent=Phyra48183;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_38 . exon 374075 374238 . + . ID=Phyra48183.5;Parent=Phyra48183;constitutive=1;ensembl_phase=1;rank=5 scaffold_38 . exon 374308 374676 . + . ID=Phyra48183.6;Parent=Phyra48183;constitutive=1;rank=6 scaffold_38 . exon 374740 374868 . + . ID=Phyra48183.7;Parent=Phyra48183;constitutive=1;rank=7 scaffold_38 . exon 374933 375028 . + . ID=Phyra48183.8;Parent=Phyra48183;constitutive=1;rank=8 scaffold_38 . exon 375120 375169 . + . ID=Phyra48183.9;Parent=Phyra48183;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_38 . exon 375250 375366 . + . ID=Phyra48183.10;Parent=Phyra48183;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_38 . exon 375438 375509 . + . ID=Phyra48183.11;Parent=Phyra48183;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_38 . exon 375586 375729 . + . ID=Phyra48183.12;Parent=Phyra48183;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=12 scaffold_38 ensembl protein_coding_gene 375869 378298 . - . ID=Phyra79281;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000099;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 375869 378298 . - . ID=Phyra79281;Parent=Phyra79281;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 375869 378298 . - 0 ID=Phyra79281;Parent=Phyra79281;rank=1 scaffold_38 . exon 375869 378298 . - . ID=Phyra79281.1;Parent=Phyra79281;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 379682 381780 . - . ID=Phyra79282;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000100;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 379682 381780 . - . ID=Phyra79282;Parent=Phyra79282;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 379682 380794 . - 0 ID=Phyra79282;Parent=Phyra79282;rank=5 scaffold_38 . exon 379682 380794 . - . ID=Phyra79282.5;Parent=Phyra79282;constitutive=1;rank=5 scaffold_38 . CDS 380870 380908 . - 0 ID=Phyra79282;Parent=Phyra79282;rank=4 scaffold_38 . exon 380870 380908 . - . ID=Phyra79282.4;Parent=Phyra79282;constitutive=1;rank=4 scaffold_38 . CDS 380987 381074 . - 0 ID=Phyra79282;Parent=Phyra79282;rank=3 scaffold_38 . exon 380987 381074 . - . ID=Phyra79282.3;Parent=Phyra79282;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 381137 381205 . - 0 ID=Phyra79282;Parent=Phyra79282;rank=2 scaffold_38 . exon 381137 381205 . - . ID=Phyra79282.2;Parent=Phyra79282;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_38 . CDS 381260 381780 . - 0 ID=Phyra79282;Parent=Phyra79282;rank=1 scaffold_38 . exon 381260 381780 . - . ID=Phyra79282.1;Parent=Phyra79282;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 ensembl protein_coding_gene 382487 383407 . + . ID=Phyra79283;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000101;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 382487 383407 . + . ID=Phyra79283;Parent=Phyra79283;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 382487 383407 . + 0 ID=Phyra79283;Parent=Phyra79283;rank=1 scaffold_38 . exon 382487 383407 . + . ID=Phyra79283.1;Parent=Phyra79283;constitutive=1;rank=1 scaffold_38 . biological_region 385280 385284 0.999 - . logic_name=eponine scaffold_38 . biological_region 386045 386047 0.999 - . logic_name=eponine scaffold_38 . biological_region 392216 392216 0.999 - . logic_name=eponine scaffold_38 . repeat_region 392394 392425 . ? . description=trf scaffold_38 . biological_region 392910 392913 0.999 - . logic_name=eponine scaffold_38 . biological_region 392965 392967 0.999 + . logic_name=eponine scaffold_38 ensembl protein_coding_gene 383496 384581 . - . ID=Phyra79284;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000102;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 383496 384581 . - . ID=Phyra79284;Parent=Phyra79284;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 383496 384581 . - 0 ID=Phyra79284;Parent=Phyra79284;rank=1 scaffold_38 . exon 383496 384581 . - . ID=Phyra79284.1;Parent=Phyra79284;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 385686 387896 . + . ID=Phyra79285;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000103;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 385686 387896 . + . ID=Phyra79285;Parent=Phyra79285;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 385686 387896 . + 0 ID=Phyra79285;Parent=Phyra79285;rank=1 scaffold_38 . exon 385686 387896 . + . ID=Phyra79285.1;Parent=Phyra79285;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 388104 388848 . + . ID=Phyra79286;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000104;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 388104 388848 . + . ID=Phyra79286;Parent=Phyra79286;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 388104 388297 . + 0 ID=Phyra79286;Parent=Phyra79286;rank=1 scaffold_38 . exon 388104 388297 . + . ID=Phyra79286.1;Parent=Phyra79286;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 388386 388848 . + 0 ID=Phyra79286;Parent=Phyra79286;rank=2 scaffold_38 . exon 388386 388848 . + . ID=Phyra79286.2;Parent=Phyra79286;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 ensembl protein_coding_gene 388972 391536 . - . ID=Phyra95365;biotype=protein_coding;external_name=C_scaffold_38000054;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 388972 391536 . - . ID=Phyra95365;Parent=Phyra95365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 388972 389762 . - 0 ID=Phyra95365;Parent=Phyra95365;rank=7 scaffold_38 . exon 388972 389762 . - . ID=Phyra95365.7;Parent=Phyra95365;constitutive=1;ensembl_phase=1;rank=7 scaffold_38 . CDS 389855 389897 . - 0 ID=Phyra95365;Parent=Phyra95365;rank=6 scaffold_38 . exon 389855 389897 . - . ID=Phyra95365.6;Parent=Phyra95365;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_38 . CDS 389968 390104 . - 0 ID=Phyra95365;Parent=Phyra95365;rank=5 scaffold_38 . exon 389968 390104 . - . ID=Phyra95365.5;Parent=Phyra95365;constitutive=1;ensembl_phase=1;rank=5 scaffold_38 . CDS 390270 390546 . - 0 ID=Phyra95365;Parent=Phyra95365;rank=4 scaffold_38 . exon 390270 390546 . - . ID=Phyra95365.4;Parent=Phyra95365;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_38 . CDS 390655 390792 . - 0 ID=Phyra95365;Parent=Phyra95365;rank=3 scaffold_38 . exon 390655 390792 . - . ID=Phyra95365.3;Parent=Phyra95365;constitutive=1;rank=3 scaffold_38 . CDS 391240 391464 . - 0 ID=Phyra95365;Parent=Phyra95365;rank=2 scaffold_38 . exon 391240 391464 . - . ID=Phyra95365.2;Parent=Phyra95365;constitutive=1;rank=2 scaffold_38 . CDS 391510 391536 . - 0 ID=Phyra95365;Parent=Phyra95365;rank=1 scaffold_38 . exon 391510 391536 . - . ID=Phyra95365.1;Parent=Phyra95365;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 391832 392706 . + . ID=Phyra95368;biotype=protein_coding;external_name=C_scaffold_38000057;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 391832 392706 . + . ID=Phyra95368;Parent=Phyra95368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 391832 391934 . + 0 ID=Phyra95368;Parent=Phyra95368;rank=1 scaffold_38 . exon 391832 391934 . + . ID=Phyra95368.1;Parent=Phyra95368;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 391997 392052 . + 0 ID=Phyra95368;Parent=Phyra95368;rank=2 scaffold_38 . exon 391997 392052 . + . ID=Phyra95368.2;Parent=Phyra95368;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 392110 392172 . + 0 ID=Phyra95368;Parent=Phyra95368;rank=3 scaffold_38 . exon 392110 392172 . + . ID=Phyra95368.3;Parent=Phyra95368;constitutive=1;rank=3 scaffold_38 . CDS 392224 392447 . + 0 ID=Phyra95368;Parent=Phyra95368;rank=4 scaffold_38 . exon 392224 392447 . + . ID=Phyra95368.4;Parent=Phyra95368;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_38 . CDS 392526 392706 . + 0 ID=Phyra95368;Parent=Phyra95368;rank=5 scaffold_38 . exon 392526 392706 . + . ID=Phyra95368.5;Parent=Phyra95368;constitutive=1;ensembl_phase=2;rank=5 scaffold_38 . repeat_region 399529 399542 . ? . description=dust scaffold_38 . repeat_region 400053 400083 . ? . description=dust scaffold_38 ensembl protein_coding_gene 393131 395332 . + . ID=Phyra79289;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000107;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 393131 395332 . + . ID=Phyra79289;Parent=Phyra79289;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 393131 394385 . + 0 ID=Phyra79289;Parent=Phyra79289;rank=1 scaffold_38 . exon 393131 394385 . + . ID=Phyra79289.1;Parent=Phyra79289;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 394506 395332 . + 0 ID=Phyra79289;Parent=Phyra79289;rank=2 scaffold_38 . exon 394506 395332 . + . ID=Phyra79289.2;Parent=Phyra79289;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 ensembl protein_coding_gene 398281 398733 . - . ID=Phyra79291;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000109;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 398281 398733 . - . ID=Phyra79291;Parent=Phyra79291;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 398281 398733 . - 0 ID=Phyra79291;Parent=Phyra79291;rank=1 scaffold_38 . exon 398281 398733 . - . ID=Phyra79291.1;Parent=Phyra79291;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 399758 400672 . - . ID=Phyra79292;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000110;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 399758 400672 . - . ID=Phyra79292;Parent=Phyra79292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 399758 400672 . - 0 ID=Phyra79292;Parent=Phyra79292;rank=1 scaffold_38 . exon 399758 400672 . - . ID=Phyra79292.1;Parent=Phyra79292;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 400839 402575 . - . ID=Phyra79293;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000111;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 400839 402575 . - . ID=Phyra79293;Parent=Phyra79293;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 400839 401403 . - 0 ID=Phyra79293;Parent=Phyra79293;rank=5 scaffold_38 . exon 400839 401403 . - . ID=Phyra79293.5;Parent=Phyra79293;constitutive=1;ensembl_phase=2;rank=5 scaffold_38 . CDS 401472 401674 . - 0 ID=Phyra79293;Parent=Phyra79293;rank=4 scaffold_38 . exon 401472 401674 . - . ID=Phyra79293.4;Parent=Phyra79293;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_38 . CDS 401742 401805 . - 0 ID=Phyra79293;Parent=Phyra79293;rank=3 scaffold_38 . exon 401742 401805 . - . ID=Phyra79293.3;Parent=Phyra79293;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 401888 402163 . - 0 ID=Phyra79293;Parent=Phyra79293;rank=2 scaffold_38 . exon 401888 402163 . - . ID=Phyra79293.2;Parent=Phyra79293;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_38 . CDS 402226 402575 . - 0 ID=Phyra79293;Parent=Phyra79293;rank=1 scaffold_38 . exon 402226 402575 . - . ID=Phyra79293.1;Parent=Phyra79293;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 ensembl protein_coding_gene 402798 404321 . - . ID=Phyra79294;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000112;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 402798 404321 . - . ID=Phyra79294;Parent=Phyra79294;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 402798 403341 . - 0 ID=Phyra79294;Parent=Phyra79294;rank=4 scaffold_38 . exon 402798 403341 . - . ID=Phyra79294.4;Parent=Phyra79294;constitutive=1;ensembl_phase=2;rank=4 scaffold_38 . CDS 403411 403613 . - 0 ID=Phyra79294;Parent=Phyra79294;rank=3 scaffold_38 . CDS 403699 403753 . - 0 ID=Phyra79294;Parent=Phyra79294;rank=2 scaffold_38 . CDS 403831 404321 . - 0 ID=Phyra79294;Parent=Phyra79294;rank=1 scaffold_38 ensembl protein_coding_gene 395575 398004 . - . ID=Phyra95370;biotype=protein_coding;external_name=C_scaffold_38000059;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 395575 398004 . - . ID=Phyra95370;Parent=Phyra95370;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 395575 395693 . - 0 ID=Phyra95370;Parent=Phyra95370;rank=6 scaffold_38 . exon 395575 395693 . - . ID=Phyra95370.6;Parent=Phyra95370;constitutive=1;ensembl_phase=1;rank=6 scaffold_38 . CDS 395763 395917 . - 0 ID=Phyra95370;Parent=Phyra95370;rank=5 scaffold_38 . exon 395763 395917 . - . ID=Phyra95370.5;Parent=Phyra95370;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_38 . CDS 395966 396131 . - 0 ID=Phyra95370;Parent=Phyra95370;rank=4 scaffold_38 . exon 395966 396131 . - . ID=Phyra95370.4;Parent=Phyra95370;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_38 . CDS 396279 396981 . - 0 ID=Phyra95370;Parent=Phyra95370;rank=3 scaffold_38 . exon 396279 396981 . - . ID=Phyra95370.3;Parent=Phyra95370;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_38 . CDS 397003 397524 . - 0 ID=Phyra95370;Parent=Phyra95370;rank=2 scaffold_38 . exon 397003 397524 . - . ID=Phyra95370.2;Parent=Phyra95370;constitutive=1;rank=2 scaffold_38 . CDS 397582 398004 . - 0 ID=Phyra95370;Parent=Phyra95370;rank=1 scaffold_38 . exon 397582 398004 . - . ID=Phyra95370.1;Parent=Phyra95370;constitutive=1;rank=1 scaffold_38 . biological_region 403987 403991 0.999 - . logic_name=eponine scaffold_38 . biological_region 404801 404804 0.999 + . logic_name=eponine scaffold_38 . biological_region 406965 406966 0.999 + . logic_name=eponine scaffold_38 . exon 403411 403613 . - . ID=Phyra79294.3;Parent=Phyra79294;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_38 . exon 403699 403753 . - . ID=Phyra79294.2;Parent=Phyra79294;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . exon 403831 404321 . - . ID=Phyra79294.1;Parent=Phyra79294;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 ensembl protein_coding_gene 404797 407351 . + . ID=Phyra79295;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000113;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 404797 407351 . + . ID=Phyra79295;Parent=Phyra79295;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 404797 404958 . + 0 ID=Phyra79295;Parent=Phyra79295;rank=1 scaffold_38 . exon 404797 404958 . + . ID=Phyra79295.1;Parent=Phyra79295;constitutive=1;rank=1 scaffold_38 . CDS 405029 405098 . + 0 ID=Phyra79295;Parent=Phyra79295;rank=2 scaffold_38 . exon 405029 405098 . + . ID=Phyra79295.2;Parent=Phyra79295;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_38 . CDS 405181 405212 . + 0 ID=Phyra79295;Parent=Phyra79295;rank=3 scaffold_38 . exon 405181 405212 . + . ID=Phyra79295.3;Parent=Phyra79295;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 405280 405381 . + 0 ID=Phyra79295;Parent=Phyra79295;rank=4 scaffold_38 . exon 405280 405381 . + . ID=Phyra79295.4;Parent=Phyra79295;constitutive=1;rank=4 scaffold_38 . CDS 405441 405542 . + 0 ID=Phyra79295;Parent=Phyra79295;rank=5 scaffold_38 . exon 405441 405542 . + . ID=Phyra79295.5;Parent=Phyra79295;constitutive=1;rank=5 scaffold_38 . CDS 405616 405877 . + 0 ID=Phyra79295;Parent=Phyra79295;rank=6 scaffold_38 . exon 405616 405877 . + . ID=Phyra79295.6;Parent=Phyra79295;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_38 . CDS 406220 406300 . + 0 ID=Phyra79295;Parent=Phyra79295;rank=7 scaffold_38 . exon 406220 406300 . + . ID=Phyra79295.7;Parent=Phyra79295;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_38 . CDS 406745 406848 . + 0 ID=Phyra79295;Parent=Phyra79295;rank=8 scaffold_38 . exon 406745 406848 . + . ID=Phyra79295.8;Parent=Phyra79295;constitutive=1;ensembl_phase=1;rank=8 scaffold_38 . CDS 407046 407351 . + 0 ID=Phyra79295;Parent=Phyra79295;rank=9 scaffold_38 . exon 407046 407351 . + . ID=Phyra79295.9;Parent=Phyra79295;constitutive=1;rank=9 scaffold_38 . repeat_region 422051 422058 . ? . description=dust scaffold_38 ensembl protein_coding_gene 417401 423163 . + . ID=Phyra79296;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000114;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 417401 423163 . + . ID=Phyra79296;Parent=Phyra79296;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 417401 423163 . + 0 ID=Phyra79296;Parent=Phyra79296;rank=1 scaffold_38 . exon 417401 423163 . + . ID=Phyra79296.1;Parent=Phyra79296;constitutive=1;rank=1 scaffold_38 . biological_region 429013 429015 0.999 + . logic_name=eponine scaffold_38 . biological_region 429192 429193 0.999 + . logic_name=eponine scaffold_38 . biological_region 429287 429290 0.999 - . logic_name=eponine scaffold_38 . biological_region 429291 429296 0.999 + . logic_name=eponine scaffold_38 . biological_region 429429 429429 0.999 + . logic_name=eponine scaffold_38 . biological_region 430984 430989 0.999 - . logic_name=eponine scaffold_38 ensembl protein_coding_gene 423340 429660 . - . ID=Phyra79297;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000115;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 423340 429660 . - . ID=Phyra79297;Parent=Phyra79297;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 423340 425545 . - 0 ID=Phyra79297;Parent=Phyra79297;rank=3 scaffold_38 . exon 423340 425545 . - . ID=Phyra79297.3;Parent=Phyra79297;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 425747 427180 . - 0 ID=Phyra79297;Parent=Phyra79297;rank=2 scaffold_38 . exon 425747 427180 . - . ID=Phyra79297.2;Parent=Phyra79297;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_38 . CDS 427613 429660 . - 0 ID=Phyra79297;Parent=Phyra79297;rank=1 scaffold_38 . exon 427613 429660 . - . ID=Phyra79297.1;Parent=Phyra79297;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 ensembl protein_coding_gene 430672 431010 . - . ID=Phyra79298;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000116;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 430672 431010 . - . ID=Phyra79298;Parent=Phyra79298;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 430672 431010 . - 0 ID=Phyra79298;Parent=Phyra79298;rank=1 scaffold_38 . exon 430672 431010 . - . ID=Phyra79298.1;Parent=Phyra79298;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 431366 433687 . - . ID=Phyra79299;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000117;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 431366 433687 . - . ID=Phyra79299;Parent=Phyra79299;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 431366 433687 . - 0 ID=Phyra79299;Parent=Phyra79299;rank=1 scaffold_38 . exon 431366 433687 . - . ID=Phyra79299.1;Parent=Phyra79299;constitutive=1;rank=1 scaffold_38 . repeat_region 433802 433858 . ? . description=trf scaffold_38 ensembl protein_coding_gene 439137 440213 . - . ID=Phyra71696;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_38000010;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 439137 440213 . - . ID=Phyra71696;Parent=Phyra71696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 439137 440213 . - 0 ID=Phyra71696;Parent=Phyra71696;rank=1 scaffold_38 . exon 439137 440213 . - . ID=Phyra71696.1;Parent=Phyra71696;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 434036 435016 . - . ID=Phyra79300;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_38000118;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 434036 435016 . - . ID=Phyra79300;Parent=Phyra79300;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 434036 435016 . - 0 ID=Phyra79300;Parent=Phyra79300;rank=1 scaffold_38 . exon 434036 435016 . - . ID=Phyra79300.1;Parent=Phyra79300;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 436583 438254 . - . ID=Phyra95374;biotype=protein_coding;external_name=C_scaffold_38000063;logic_name=jgi_phyra1 scaffold_38 ensembl transcript 436583 438254 . - . ID=Phyra95374;Parent=Phyra95374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_38 . CDS 436583 437226 . - 0 ID=Phyra95374;Parent=Phyra95374;rank=4 scaffold_38 . exon 436583 437226 . - . ID=Phyra95374.4;Parent=Phyra95374;constitutive=1;ensembl_phase=1;rank=4 scaffold_38 . CDS 437272 437845 . - 0 ID=Phyra95374;Parent=Phyra95374;rank=3 scaffold_38 . exon 437272 437845 . - . ID=Phyra95374.3;Parent=Phyra95374;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_38 . CDS 437916 438147 . - 0 ID=Phyra95374;Parent=Phyra95374;rank=2 scaffold_38 . exon 437916 438147 . - . ID=Phyra95374.2;Parent=Phyra95374;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 438205 438254 . - 0 ID=Phyra95374;Parent=Phyra95374;rank=1 scaffold_38 . exon 438205 438254 . - . ID=Phyra95374.1;Parent=Phyra95374;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_36 1 447558 scaffold_36 . biological_region 24 24 0.999 + . logic_name=eponine scaffold_36 . biological_region 462 466 0.999 - . logic_name=eponine scaffold_36 . biological_region 1069 1071 0.999 - . logic_name=eponine scaffold_36 . biological_region 1308 1310 0.999 + . logic_name=eponine scaffold_36 . repeat_region 2674 2723 . ? . description=dust scaffold_36 . biological_region 4422 4423 0.999 - . logic_name=eponine scaffold_36 . repeat_region 4558 4656 . + . description=(TCG)n scaffold_36 . repeat_region 5793 5851 . ? . description=dust scaffold_36 . biological_region 5830 5832 0.999 + . logic_name=eponine scaffold_36 . biological_region 5836 5838 0.999 + . logic_name=eponine scaffold_36 . repeat_region 6214 6263 . ? . description=trf scaffold_36 . biological_region 6222 6225 0.999 + . logic_name=eponine scaffold_36 . biological_region 6235 6243 0.999 + . logic_name=eponine scaffold_36 . biological_region 6349 6357 0.999 + . logic_name=eponine scaffold_36 . biological_region 6417 6422 0.999 - . logic_name=eponine scaffold_36 . biological_region 6446 6449 0.999 - . logic_name=eponine scaffold_36 . biological_region 7235 7239 0.999 - . logic_name=eponine scaffold_36 . biological_region 7842 7844 0.999 - . logic_name=eponine scaffold_36 . biological_region 8081 8083 0.999 + . logic_name=eponine scaffold_36 ensembl tRNA_gene 2882 2962 . + . ID=EPrPRAG00000000159;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_36 ensembl transcript 2882 2962 . + . ID=EPrPRAT00000000159;Parent=EPrPRAG00000000159;biotype=tRNA;logic_name=ncrna_eg scaffold_36 . exon 2882 2962 . + . ID=EPrPRAE00000000159;Parent=EPrPRAT00000000159;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 604 1071 . - . ID=Phyra47986;biotype=protein_coding;external_name=gwEuk.36.77.1;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 604 1071 . - . ID=Phyra47986;Parent=Phyra47986;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 604 1071 . - 0 ID=Phyra47986;Parent=Phyra47986;rank=1 scaffold_36 . exon 604 1071 . - . ID=Phyra47986.1;Parent=Phyra47986;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 1418 2304 . + . ID=Phyra78959;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000002;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 1418 2304 . + . ID=Phyra78959;Parent=Phyra78959;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 1418 1585 . + 0 ID=Phyra78959;Parent=Phyra78959;rank=1 scaffold_36 . exon 1418 1585 . + . ID=Phyra78959.1;Parent=Phyra78959;constitutive=1;rank=1 scaffold_36 . CDS 1667 2072 . + 0 ID=Phyra78959;Parent=Phyra78959;rank=2 scaffold_36 . exon 1667 2072 . + . ID=Phyra78959.2;Parent=Phyra78959;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_36 . CDS 2258 2304 . + 0 ID=Phyra78959;Parent=Phyra78959;rank=3 scaffold_36 . exon 2258 2304 . + . ID=Phyra78959.3;Parent=Phyra78959;constitutive=1;ensembl_phase=1;rank=3 scaffold_36 ensembl protein_coding_gene 4176 4817 . - . ID=Phyra78960;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000003;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 4176 4817 . - . ID=Phyra78960;Parent=Phyra78960;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 4176 4817 . - 0 ID=Phyra78960;Parent=Phyra78960;rank=1 scaffold_36 . exon 4176 4817 . - . ID=Phyra78960.1;Parent=Phyra78960;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 4992 7844 . - . ID=Phyra78961;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000004;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 4992 7844 . - . ID=Phyra78961;Parent=Phyra78961;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 4992 5552 . - 0 ID=Phyra78961;Parent=Phyra78961;rank=3 scaffold_36 . exon 4992 5552 . - . ID=Phyra78961.3;Parent=Phyra78961;constitutive=1;rank=3 scaffold_36 . CDS 5616 6046 . - 0 ID=Phyra78961;Parent=Phyra78961;rank=2 scaffold_36 . exon 5616 6046 . - . ID=Phyra78961.2;Parent=Phyra78961;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 6425 7844 . - 0 ID=Phyra78961;Parent=Phyra78961;rank=1 scaffold_36 . exon 6425 7844 . - . ID=Phyra78961.1;Parent=Phyra78961;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 ensembl protein_coding_gene 8191 9613 . + . ID=Phyra95259;biotype=protein_coding;external_name=C_scaffold_36000002;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 8191 9613 . + . ID=Phyra95259;Parent=Phyra95259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 8191 8358 . + 0 ID=Phyra95259;Parent=Phyra95259;rank=1 scaffold_36 . exon 8191 8358 . + . ID=Phyra95259.1;Parent=Phyra95259;constitutive=1;rank=1 scaffold_36 . CDS 8440 8845 . + 0 ID=Phyra95259;Parent=Phyra95259;rank=2 scaffold_36 . exon 8440 8845 . + . ID=Phyra95259.2;Parent=Phyra95259;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_36 . CDS 9031 9053 . + 0 ID=Phyra95259;Parent=Phyra95259;rank=3 scaffold_36 . exon 9031 9053 . + . ID=Phyra95259.3;Parent=Phyra95259;constitutive=1;ensembl_phase=1;rank=3 scaffold_36 . CDS 9239 9285 . + 0 ID=Phyra95259;Parent=Phyra95259;rank=4 scaffold_36 . exon 9239 9285 . + . ID=Phyra95259.4;Parent=Phyra95259;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_36 . CDS 9442 9613 . + 0 ID=Phyra95259;Parent=Phyra95259;rank=5 scaffold_36 . exon 9442 9613 . + . ID=Phyra95259.5;Parent=Phyra95259;constitutive=1;ensembl_phase=2;rank=5 scaffold_36 ensembl protein_coding_gene 15690 16770 . - . ID=Phyra78966;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000009;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 15690 16770 . - . ID=Phyra78966;Parent=Phyra78966;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 15690 16216 . - 0 ID=Phyra78966;Parent=Phyra78966;rank=4 scaffold_36 . exon 15690 16216 . - . ID=Phyra78966.4;Parent=Phyra78966;constitutive=1;ensembl_phase=1;rank=4 scaffold_36 . CDS 16295 16384 . - 0 ID=Phyra78966;Parent=Phyra78966;rank=3 scaffold_36 . exon 16295 16384 . - . ID=Phyra78966.3;Parent=Phyra78966;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_36 . CDS 16461 16506 . - 0 ID=Phyra78966;Parent=Phyra78966;rank=2 scaffold_36 . exon 16461 16506 . - . ID=Phyra78966.2;Parent=Phyra78966;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_36 . CDS 16597 16770 . - 0 ID=Phyra78966;Parent=Phyra78966;rank=1 scaffold_36 . exon 16597 16770 . - . ID=Phyra78966.1;Parent=Phyra78966;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 9963 10511 . - . ID=Phyra95260;biotype=protein_coding;external_name=C_scaffold_36000003;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 9963 10511 . - . ID=Phyra95260;Parent=Phyra95260;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 9963 10104 . - 0 ID=Phyra95260;Parent=Phyra95260;rank=2 scaffold_36 . exon 9963 10104 . - . ID=Phyra95260.2;Parent=Phyra95260;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 10150 10511 . - 0 ID=Phyra95260;Parent=Phyra95260;rank=1 scaffold_36 . exon 10150 10511 . - . ID=Phyra95260.1;Parent=Phyra95260;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 13195 15432 . + . ID=Phyra95261;biotype=protein_coding;external_name=C_scaffold_36000004;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 13195 15432 . + . ID=Phyra95261;Parent=Phyra95261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 13195 13893 . + 0 ID=Phyra95261;Parent=Phyra95261;rank=1 scaffold_36 . exon 13195 13893 . + . ID=Phyra95261.1;Parent=Phyra95261;constitutive=1;rank=1 scaffold_36 . CDS 13930 14132 . + 0 ID=Phyra95261;Parent=Phyra95261;rank=2 scaffold_36 . exon 13930 14132 . + . ID=Phyra95261.2;Parent=Phyra95261;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_36 . CDS 14532 14887 . + 0 ID=Phyra95261;Parent=Phyra95261;rank=3 scaffold_36 . exon 14532 14887 . + . ID=Phyra95261.3;Parent=Phyra95261;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_36 . CDS 14912 15432 . + 0 ID=Phyra95261;Parent=Phyra95261;rank=4 scaffold_36 . exon 14912 15432 . + . ID=Phyra95261.4;Parent=Phyra95261;constitutive=1;ensembl_phase=1;rank=4 scaffold_36 . repeat_region 19890 20910 . ? . description=dust scaffold_36 . repeat_region 22665 22694 . ? . description=trf scaffold_36 . repeat_region 23089 23114 . ? . description=trf scaffold_36 . biological_region 24041 24045 0.999 + . logic_name=eponine scaffold_36 . biological_region 24330 24333 0.999 - . logic_name=eponine scaffold_36 . biological_region 24748 24750 0.999 + . logic_name=eponine scaffold_36 . biological_region 27828 27831 0.999 - . logic_name=eponine scaffold_36 . biological_region 28504 28504 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 20917 21399 . + . ID=Phyra78967;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000010;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 20917 21399 . + . ID=Phyra78967;Parent=Phyra78967;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 20917 21399 . + 0 ID=Phyra78967;Parent=Phyra78967;rank=1 scaffold_36 . exon 20917 21399 . + . ID=Phyra78967.1;Parent=Phyra78967;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 23386 32676 . + . ID=Phyra78968;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000011;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 23386 32676 . + . ID=Phyra78968;Parent=Phyra78968;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 23386 23559 . + 0 ID=Phyra78968;Parent=Phyra78968;rank=1 scaffold_36 . exon 23386 23559 . + . ID=Phyra78968.1;Parent=Phyra78968;constitutive=1;rank=1 scaffold_36 . CDS 23650 23695 . + 0 ID=Phyra78968;Parent=Phyra78968;rank=2 scaffold_36 . exon 23650 23695 . + . ID=Phyra78968.2;Parent=Phyra78968;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_36 . CDS 23772 23861 . + 0 ID=Phyra78968;Parent=Phyra78968;rank=3 scaffold_36 . exon 23772 23861 . + . ID=Phyra78968.3;Parent=Phyra78968;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_36 . CDS 23940 24088 . + 0 ID=Phyra78968;Parent=Phyra78968;rank=4 scaffold_36 . exon 23940 24088 . + . ID=Phyra78968.4;Parent=Phyra78968;constitutive=1;ensembl_phase=1;rank=4 scaffold_36 . CDS 24119 24619 . + 0 ID=Phyra78968;Parent=Phyra78968;rank=5 scaffold_36 . exon 24119 24619 . + . ID=Phyra78968.5;Parent=Phyra78968;constitutive=1;rank=5 scaffold_36 . CDS 24674 24834 . + 0 ID=Phyra78968;Parent=Phyra78968;rank=6 scaffold_36 . exon 24674 24834 . + . ID=Phyra78968.6;Parent=Phyra78968;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_36 . CDS 24914 25209 . + 0 ID=Phyra78968;Parent=Phyra78968;rank=7 scaffold_36 . exon 24914 25209 . + . ID=Phyra78968.7;Parent=Phyra78968;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_36 . CDS 25273 25786 . + 0 ID=Phyra78968;Parent=Phyra78968;rank=8 scaffold_36 . exon 25273 25786 . + . ID=Phyra78968.8;Parent=Phyra78968;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_36 . CDS 26006 26070 . + 0 ID=Phyra78968;Parent=Phyra78968;rank=9 scaffold_36 . exon 26006 26070 . + . ID=Phyra78968.9;Parent=Phyra78968;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_36 . CDS 26353 26697 . + 0 ID=Phyra78968;Parent=Phyra78968;rank=10 scaffold_36 . exon 26353 26697 . + . ID=Phyra78968.10;Parent=Phyra78968;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_36 . CDS 26740 27919 . + 0 ID=Phyra78968;Parent=Phyra78968;rank=11 scaffold_36 . exon 26740 27919 . + . ID=Phyra78968.11;Parent=Phyra78968;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_36 . CDS 27939 27990 . + 0 ID=Phyra78968;Parent=Phyra78968;rank=12 scaffold_36 . exon 27939 27990 . + . ID=Phyra78968.12;Parent=Phyra78968;constitutive=1;ensembl_phase=2;rank=12 scaffold_36 . CDS 28326 29253 . + 0 ID=Phyra78968;Parent=Phyra78968;rank=13 scaffold_36 . exon 28326 29253 . + . ID=Phyra78968.13;Parent=Phyra78968;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_36 . CDS 29368 31524 . + 0 ID=Phyra78968;Parent=Phyra78968;rank=14 scaffold_36 . exon 29368 31524 . + . ID=Phyra78968.14;Parent=Phyra78968;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_36 . CDS 31775 32086 . + 0 ID=Phyra78968;Parent=Phyra78968;rank=15 scaffold_36 . CDS 32210 32676 . + 0 ID=Phyra78968;Parent=Phyra78968;rank=16 scaffold_36 . exon 31775 32086 . + . ID=Phyra78968.15;Parent=Phyra78968;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=15 scaffold_36 . exon 32210 32676 . + . ID=Phyra78968.16;Parent=Phyra78968;constitutive=1;ensembl_phase=1;rank=16 scaffold_36 . repeat_region 47893 47900 . ? . description=dust scaffold_36 ensembl protein_coding_gene 49448 51793 . - . ID=Phyra78970;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000013;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 49448 51793 . - . ID=Phyra78970;Parent=Phyra78970;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 49448 49558 . - 0 ID=Phyra78970;Parent=Phyra78970;rank=2 scaffold_36 . exon 49448 49558 . - . ID=Phyra78970.2;Parent=Phyra78970;constitutive=1;rank=2 scaffold_36 . CDS 49838 51793 . - 0 ID=Phyra78970;Parent=Phyra78970;rank=1 scaffold_36 ensembl protein_coding_gene 44244 46374 . + . ID=Phyra95263;biotype=protein_coding;external_name=C_scaffold_36000006;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 44244 46374 . + . ID=Phyra95263;Parent=Phyra95263;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 44244 44843 . + 0 ID=Phyra95263;Parent=Phyra95263;rank=1 scaffold_36 . exon 44244 44843 . + . ID=Phyra95263.1;Parent=Phyra95263;constitutive=1;rank=1 scaffold_36 . CDS 45436 46374 . + 0 ID=Phyra95263;Parent=Phyra95263;rank=2 scaffold_36 . exon 45436 46374 . + . ID=Phyra95263.2;Parent=Phyra95263;constitutive=1;rank=2 scaffold_36 . repeat_region 58203 58239 . ? . description=trf scaffold_36 . exon 49838 51793 . - . ID=Phyra78970.1;Parent=Phyra78970;constitutive=1;rank=1 scaffold_36 . repeat_region 68053 68228 . ? . description=dust scaffold_36 . repeat_region 76189 76246 . ? . description=trf scaffold_36 . repeat_region 76190 76246 . ? . description=trf scaffold_36 . repeat_region 76194 76246 . ? . description=trf scaffold_36 . repeat_region 82745 82754 . ? . description=dust scaffold_36 . biological_region 83980 83982 0.999 - . logic_name=eponine scaffold_36 . biological_region 84074 84074 0.999 + . logic_name=eponine scaffold_36 . biological_region 84165 84167 0.999 - . logic_name=eponine scaffold_36 . repeat_region 84677 84726 . ? . description=dust scaffold_36 . repeat_region 84743 85584 . - . description=GypsyPi-1c_I-int scaffold_36 . repeat_region 85649 93549 . ? . description=dust scaffold_36 ensembl protein_coding_gene 83504 84173 . + . ID=Phyra78971;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000014;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 83504 84173 . + . ID=Phyra78971;Parent=Phyra78971;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 83504 84102 . + 0 ID=Phyra78971;Parent=Phyra78971;rank=1 scaffold_36 . exon 83504 84102 . + . ID=Phyra78971.1;Parent=Phyra78971;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 84152 84173 . + 0 ID=Phyra78971;Parent=Phyra78971;rank=2 scaffold_36 . exon 84152 84173 . + . ID=Phyra78971.2;Parent=Phyra78971;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 ensembl protein_coding_gene 84576 95949 . - . ID=Phyra78972;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000015;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 84576 95949 . - . ID=Phyra78972;Parent=Phyra78972;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 84576 84611 . - 0 ID=Phyra78972;Parent=Phyra78972;rank=4 scaffold_36 . exon 84576 84611 . - . ID=Phyra78972.4;Parent=Phyra78972;constitutive=1;rank=4 scaffold_36 . CDS 84904 85063 . - 0 ID=Phyra78972;Parent=Phyra78972;rank=3 scaffold_36 . exon 84904 85063 . - . ID=Phyra78972.3;Parent=Phyra78972;constitutive=1;ensembl_phase=2;rank=3 scaffold_36 . CDS 85136 85477 . - 0 ID=Phyra78972;Parent=Phyra78972;rank=2 scaffold_36 . exon 85136 85477 . - . ID=Phyra78972.2;Parent=Phyra78972;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_36 . CDS 93758 95949 . - 0 ID=Phyra78972;Parent=Phyra78972;rank=1 scaffold_36 . exon 93758 95949 . - . ID=Phyra78972.1;Parent=Phyra78972;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 97496 98287 . - . ID=Phyra78973;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000016;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 97496 98287 . - . ID=Phyra78973;Parent=Phyra78973;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 97496 98287 . - 0 ID=Phyra78973;Parent=Phyra78973;rank=1 scaffold_36 . exon 97496 98287 . - . ID=Phyra78973.1;Parent=Phyra78973;constitutive=1;rank=1 scaffold_36 . repeat_region 99767 99781 . ? . description=dust scaffold_36 . repeat_region 103690 103739 . ? . description=dust scaffold_36 . repeat_region 105166 105220 . ? . description=trf scaffold_36 . biological_region 107028 107030 0.999 + . logic_name=eponine scaffold_36 . biological_region 107315 107317 0.999 - . logic_name=eponine scaffold_36 . repeat_region 108852 108881 . ? . description=trf scaffold_36 . repeat_region 108856 108884 . ? . description=dust scaffold_36 ensembl protein_coding_gene 99932 101291 . + . ID=Phyra78974;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000017;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 99932 101291 . + . ID=Phyra78974;Parent=Phyra78974;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 99932 101200 . + 0 ID=Phyra78974;Parent=Phyra78974;rank=1 scaffold_36 . exon 99932 101200 . + . ID=Phyra78974.1;Parent=Phyra78974;constitutive=1;rank=1 scaffold_36 . CDS 101274 101291 . + 0 ID=Phyra78974;Parent=Phyra78974;rank=2 scaffold_36 . exon 101274 101291 . + . ID=Phyra78974.2;Parent=Phyra78974;constitutive=1;rank=2 scaffold_36 ensembl protein_coding_gene 106903 108282 . + . ID=Phyra78975;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000018;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 106903 108282 . + . ID=Phyra78975;Parent=Phyra78975;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 106903 108282 . + 0 ID=Phyra78975;Parent=Phyra78975;rank=1 scaffold_36 . exon 106903 108282 . + . ID=Phyra78975.1;Parent=Phyra78975;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 108742 113904 . + . ID=Phyra78976;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000019;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 108742 113904 . + . ID=Phyra78976;Parent=Phyra78976;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 108742 113904 . + 0 ID=Phyra78976;Parent=Phyra78976;rank=1 scaffold_36 . exon 108742 113904 . + . ID=Phyra78976.1;Parent=Phyra78976;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 116393 117667 . + . ID=Phyra78977;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000020;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 116393 117667 . + . ID=Phyra78977;Parent=Phyra78977;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 116393 116638 . + 0 ID=Phyra78977;Parent=Phyra78977;rank=1 scaffold_36 . exon 116393 116638 . + . ID=Phyra78977.1;Parent=Phyra78977;constitutive=1;rank=1 scaffold_36 . CDS 116711 117667 . + 0 ID=Phyra78977;Parent=Phyra78977;rank=2 scaffold_36 . exon 116711 117667 . + . ID=Phyra78977.2;Parent=Phyra78977;constitutive=1;rank=2 scaffold_36 . repeat_region 124207 124272 . ? . description=trf scaffold_36 . repeat_region 125335 125383 . ? . description=dust scaffold_36 . repeat_region 125768 126046 . ? . description=dust scaffold_36 . repeat_region 127104 127153 . ? . description=dust scaffold_36 . repeat_region 127173 127223 . ? . description=trf scaffold_36 . repeat_region 127216 127241 . ? . description=trf scaffold_36 ensembl protein_coding_gene 122656 123513 . - . ID=Phyra78978;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000021;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 122656 123513 . - . ID=Phyra78978;Parent=Phyra78978;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 122656 123513 . - 0 ID=Phyra78978;Parent=Phyra78978;rank=1 scaffold_36 . exon 122656 123513 . - . ID=Phyra78978.1;Parent=Phyra78978;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 123922 124452 . - . ID=Phyra78979;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000022;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 123922 124452 . - . ID=Phyra78979;Parent=Phyra78979;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 123922 124452 . - 0 ID=Phyra78979;Parent=Phyra78979;rank=1 scaffold_36 . exon 123922 124452 . - . ID=Phyra78979.1;Parent=Phyra78979;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 128936 129802 . + . ID=Phyra78980;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000023;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 128936 129802 . + . ID=Phyra78980;Parent=Phyra78980;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 128936 129802 . + 0 ID=Phyra78980;Parent=Phyra78980;rank=1 scaffold_36 . exon 128936 129802 . + . ID=Phyra78980.1;Parent=Phyra78980;constitutive=1;rank=1 scaffold_36 . biological_region 133289 133289 0.999 + . logic_name=eponine scaffold_36 ensembl protein_coding_gene 130142 133086 . + . ID=Phyra78981;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000024;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 130142 133086 . + . ID=Phyra78981;Parent=Phyra78981;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 130142 130472 . + 0 ID=Phyra78981;Parent=Phyra78981;rank=1 scaffold_36 . exon 130142 130472 . + . ID=Phyra78981.1;Parent=Phyra78981;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 130537 130603 . + 0 ID=Phyra78981;Parent=Phyra78981;rank=2 scaffold_36 . exon 130537 130603 . + . ID=Phyra78981.2;Parent=Phyra78981;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_36 . CDS 130665 133086 . + 0 ID=Phyra78981;Parent=Phyra78981;rank=3 scaffold_36 . exon 130665 133086 . + . ID=Phyra78981.3;Parent=Phyra78981;constitutive=1;ensembl_phase=2;rank=3 scaffold_36 ensembl protein_coding_gene 133228 134248 . - . ID=Phyra78982;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000025;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 133228 134248 . - . ID=Phyra78982;Parent=Phyra78982;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 133228 133572 . - 0 ID=Phyra78982;Parent=Phyra78982;rank=3 scaffold_36 . exon 133228 133572 . - . ID=Phyra78982.3;Parent=Phyra78982;constitutive=1;rank=3 scaffold_36 . CDS 133982 134161 . - 0 ID=Phyra78982;Parent=Phyra78982;rank=2 scaffold_36 . exon 133982 134161 . - . ID=Phyra78982.2;Parent=Phyra78982;constitutive=1;rank=2 scaffold_36 . CDS 134243 134248 . - 0 ID=Phyra78982;Parent=Phyra78982;rank=1 scaffold_36 . exon 134243 134248 . - . ID=Phyra78982.1;Parent=Phyra78982;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 136851 138656 . - . ID=Phyra78983;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000026;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 136851 138656 . - . ID=Phyra78983;Parent=Phyra78983;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 136851 138656 . - 0 ID=Phyra78983;Parent=Phyra78983;rank=1 scaffold_36 . exon 136851 138656 . - . ID=Phyra78983.1;Parent=Phyra78983;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 139058 143071 . - . ID=Phyra78984;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000027;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 139058 143071 . - . ID=Phyra78984;Parent=Phyra78984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 139058 140903 . - 0 ID=Phyra78984;Parent=Phyra78984;rank=2 scaffold_36 . exon 139058 140903 . - . ID=Phyra78984.2;Parent=Phyra78984;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 141201 143071 . - 0 ID=Phyra78984;Parent=Phyra78984;rank=1 scaffold_36 . repeat_region 139529 139705 . ? . description=trf scaffold_36 . repeat_region 141452 141626 . ? . description=trf scaffold_36 . repeat_region 143830 143839 . ? . description=dust scaffold_36 . exon 141201 143071 . - . ID=Phyra78984.1;Parent=Phyra78984;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 144040 148744 . + . ID=Phyra78985;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000028;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 144040 148744 . + . ID=Phyra78985;Parent=Phyra78985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 144040 147587 . + 0 ID=Phyra78985;Parent=Phyra78985;rank=1 scaffold_36 . exon 144040 147587 . + . ID=Phyra78985.1;Parent=Phyra78985;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 147643 148744 . + 0 ID=Phyra78985;Parent=Phyra78985;rank=2 scaffold_36 . exon 147643 148744 . + . ID=Phyra78985.2;Parent=Phyra78985;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . biological_region 153936 153942 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 154006 160491 . + . ID=Phyra47995;biotype=protein_coding;external_name=gwEuk.36.86.1;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 154006 160491 . + . ID=Phyra47995;Parent=Phyra47995;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 154006 154840 . + 0 ID=Phyra47995;Parent=Phyra47995;rank=1 scaffold_36 . exon 154006 154840 . + . ID=Phyra47995.1;Parent=Phyra47995;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 154910 157782 . + 0 ID=Phyra47995;Parent=Phyra47995;rank=2 scaffold_36 . exon 154910 157782 . + . ID=Phyra47995.2;Parent=Phyra47995;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 157834 160491 . + 0 ID=Phyra47995;Parent=Phyra47995;rank=3 scaffold_36 . exon 157834 160491 . + . ID=Phyra47995.3;Parent=Phyra47995;constitutive=1;rank=3 scaffold_36 ensembl protein_coding_gene 152156 153300 . - . ID=Phyra78986;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000029;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 152156 153300 . - . ID=Phyra78986;Parent=Phyra78986;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 152156 152338 . - 0 ID=Phyra78986;Parent=Phyra78986;rank=5 scaffold_36 . exon 152156 152338 . - . ID=Phyra78986.5;Parent=Phyra78986;constitutive=1;rank=5 scaffold_36 . CDS 152401 152575 . - 0 ID=Phyra78986;Parent=Phyra78986;rank=4 scaffold_36 . exon 152401 152575 . - . ID=Phyra78986.4;Parent=Phyra78986;constitutive=1;ensembl_phase=2;rank=4 scaffold_36 . CDS 152806 152936 . - 0 ID=Phyra78986;Parent=Phyra78986;rank=3 scaffold_36 . exon 152806 152936 . - . ID=Phyra78986.3;Parent=Phyra78986;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_36 . CDS 153006 153065 . - 0 ID=Phyra78986;Parent=Phyra78986;rank=2 scaffold_36 . exon 153006 153065 . - . ID=Phyra78986.2;Parent=Phyra78986;constitutive=1;rank=2 scaffold_36 . CDS 153133 153300 . - 0 ID=Phyra78986;Parent=Phyra78986;rank=1 scaffold_36 . exon 153133 153300 . - . ID=Phyra78986.1;Parent=Phyra78986;constitutive=1;rank=1 scaffold_36 . repeat_region 160174 160206 . ? . description=trf scaffold_36 . repeat_region 166307 166315 . ? . description=dust scaffold_36 ensembl protein_coding_gene 160619 162061 . - . ID=Phyra78989;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000032;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 160619 162061 . - . ID=Phyra78989;Parent=Phyra78989;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 160619 162061 . - 0 ID=Phyra78989;Parent=Phyra78989;rank=1 scaffold_36 . exon 160619 162061 . - . ID=Phyra78989.1;Parent=Phyra78989;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 162846 165105 . - . ID=Phyra78990;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000033;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 162846 165105 . - . ID=Phyra78990;Parent=Phyra78990;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 162846 162907 . - 0 ID=Phyra78990;Parent=Phyra78990;rank=6 scaffold_36 . exon 162846 162907 . - . ID=Phyra78990.6;Parent=Phyra78990;constitutive=1;ensembl_phase=1;rank=6 scaffold_36 . CDS 162997 163063 . - 0 ID=Phyra78990;Parent=Phyra78990;rank=5 scaffold_36 . exon 162997 163063 . - . ID=Phyra78990.5;Parent=Phyra78990;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_36 . CDS 163231 163759 . - 0 ID=Phyra78990;Parent=Phyra78990;rank=4 scaffold_36 . exon 163231 163759 . - . ID=Phyra78990.4;Parent=Phyra78990;constitutive=1;ensembl_phase=2;rank=4 scaffold_36 . CDS 163840 164087 . - 0 ID=Phyra78990;Parent=Phyra78990;rank=3 scaffold_36 . exon 163840 164087 . - . ID=Phyra78990.3;Parent=Phyra78990;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_36 . CDS 164140 164254 . - 0 ID=Phyra78990;Parent=Phyra78990;rank=2 scaffold_36 . exon 164140 164254 . - . ID=Phyra78990.2;Parent=Phyra78990;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 164324 165105 . - 0 ID=Phyra78990;Parent=Phyra78990;rank=1 scaffold_36 . exon 164324 165105 . - . ID=Phyra78990.1;Parent=Phyra78990;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 165284 167420 . + . ID=Phyra78991;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000034;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 165284 167420 . + . ID=Phyra78991;Parent=Phyra78991;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 165284 165384 . + 0 ID=Phyra78991;Parent=Phyra78991;rank=1 scaffold_36 . exon 165284 165384 . + . ID=Phyra78991.1;Parent=Phyra78991;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 165477 166252 . + 0 ID=Phyra78991;Parent=Phyra78991;rank=2 scaffold_36 . exon 165477 166252 . + . ID=Phyra78991.2;Parent=Phyra78991;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 166320 166521 . + 0 ID=Phyra78991;Parent=Phyra78991;rank=3 scaffold_36 . exon 166320 166521 . + . ID=Phyra78991.3;Parent=Phyra78991;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_36 . CDS 166604 167420 . + 0 ID=Phyra78991;Parent=Phyra78991;rank=4 scaffold_36 . exon 166604 167420 . + . ID=Phyra78991.4;Parent=Phyra78991;constitutive=1;ensembl_phase=2;rank=4 scaffold_36 ensembl protein_coding_gene 167575 169845 . - . ID=Phyra78992;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000035;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 167575 169845 . - . ID=Phyra78992;Parent=Phyra78992;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 167575 169845 . - 0 ID=Phyra78992;Parent=Phyra78992;rank=1 scaffold_36 . exon 167575 169845 . - . ID=Phyra78992.1;Parent=Phyra78992;constitutive=1;rank=1 scaffold_36 . biological_region 172961 172965 0.999 - . logic_name=eponine scaffold_36 . biological_region 174349 174352 0.999 + . logic_name=eponine scaffold_36 . biological_region 175520 175524 0.999 + . logic_name=eponine scaffold_36 ensembl protein_coding_gene 170183 172549 . - . ID=Phyra78993;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000036;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 170183 172549 . - . ID=Phyra78993;Parent=Phyra78993;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 170183 172549 . - 0 ID=Phyra78993;Parent=Phyra78993;rank=1 scaffold_36 . exon 170183 172549 . - . ID=Phyra78993.1;Parent=Phyra78993;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 172850 174058 . - . ID=Phyra78994;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000037;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 172850 174058 . - . ID=Phyra78994;Parent=Phyra78994;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 172850 174058 . - 0 ID=Phyra78994;Parent=Phyra78994;rank=1 scaffold_36 . exon 172850 174058 . - . ID=Phyra78994.1;Parent=Phyra78994;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 175263 178423 . + . ID=Phyra78995;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000038;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 175263 178423 . + . ID=Phyra78995;Parent=Phyra78995;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 175263 177432 . + 0 ID=Phyra78995;Parent=Phyra78995;rank=1 scaffold_36 . exon 175263 177432 . + . ID=Phyra78995.1;Parent=Phyra78995;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 177498 177511 . + 0 ID=Phyra78995;Parent=Phyra78995;rank=2 scaffold_36 . exon 177498 177511 . + . ID=Phyra78995.2;Parent=Phyra78995;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 177913 178152 . + 0 ID=Phyra78995;Parent=Phyra78995;rank=3 scaffold_36 . exon 177913 178152 . + . ID=Phyra78995.3;Parent=Phyra78995;constitutive=1;rank=3 scaffold_36 . CDS 178238 178423 . + 0 ID=Phyra78995;Parent=Phyra78995;rank=4 scaffold_36 . exon 178238 178423 . + . ID=Phyra78995.4;Parent=Phyra78995;constitutive=1;rank=4 scaffold_36 . repeat_region 181111 181142 . ? . description=trf scaffold_36 . repeat_region 181376 181383 . ? . description=dust scaffold_36 ensembl protein_coding_gene 182697 183122 . + . ID=Phyra78996;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000039;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 182697 183122 . + . ID=Phyra78996;Parent=Phyra78996;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 182697 183122 . + 0 ID=Phyra78996;Parent=Phyra78996;rank=1 scaffold_36 . exon 182697 183122 . + . ID=Phyra78996.1;Parent=Phyra78996;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 183403 183903 . - . ID=Phyra78997;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000040;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 183403 183903 . - . ID=Phyra78997;Parent=Phyra78997;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 183403 183903 . - 0 ID=Phyra78997;Parent=Phyra78997;rank=1 scaffold_36 . exon 183403 183903 . - . ID=Phyra78997.1;Parent=Phyra78997;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 185029 187422 . + . ID=Phyra78998;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000041;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 185029 187422 . + . ID=Phyra78998;Parent=Phyra78998;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 185029 187422 . + 0 ID=Phyra78998;Parent=Phyra78998;rank=1 scaffold_36 . exon 185029 187422 . + . ID=Phyra78998.1;Parent=Phyra78998;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 187551 189322 . - . ID=Phyra78999;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000042;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 187551 189322 . - . ID=Phyra78999;Parent=Phyra78999;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 187551 188422 . - 0 ID=Phyra78999;Parent=Phyra78999;rank=6 scaffold_36 . exon 187551 188422 . - . ID=Phyra78999.6;Parent=Phyra78999;constitutive=1;ensembl_phase=1;rank=6 scaffold_36 . CDS 188520 188772 . - 0 ID=Phyra78999;Parent=Phyra78999;rank=5 scaffold_36 . exon 188520 188772 . - . ID=Phyra78999.5;Parent=Phyra78999;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_36 . CDS 188848 188903 . - 0 ID=Phyra78999;Parent=Phyra78999;rank=4 scaffold_36 . exon 188848 188903 . - . ID=Phyra78999.4;Parent=Phyra78999;constitutive=1;ensembl_phase=1;rank=4 scaffold_36 . CDS 188965 189051 . - 0 ID=Phyra78999;Parent=Phyra78999;rank=3 scaffold_36 . exon 188965 189051 . - . ID=Phyra78999.3;Parent=Phyra78999;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_36 . CDS 189111 189190 . - 0 ID=Phyra78999;Parent=Phyra78999;rank=2 scaffold_36 . CDS 189249 189322 . - 0 ID=Phyra78999;Parent=Phyra78999;rank=1 scaffold_36 . exon 189111 189190 . - . ID=Phyra78999.2;Parent=Phyra78999;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_36 . exon 189249 189322 . - . ID=Phyra78999.1;Parent=Phyra78999;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 196048 196869 . + . ID=Phyra79000;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000043;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 196048 196869 . + . ID=Phyra79000;Parent=Phyra79000;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 196048 196594 . + 0 ID=Phyra79000;Parent=Phyra79000;rank=1 scaffold_36 . exon 196048 196594 . + . ID=Phyra79000.1;Parent=Phyra79000;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 196664 196869 . + 0 ID=Phyra79000;Parent=Phyra79000;rank=2 scaffold_36 . exon 196664 196869 . + . ID=Phyra79000.2;Parent=Phyra79000;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . biological_region 200826 200826 0.999 + . logic_name=eponine scaffold_36 . biological_region 207252 207256 0.999 + . logic_name=eponine scaffold_36 . biological_region 207340 207341 0.999 + . logic_name=eponine scaffold_36 . biological_region 207384 207388 0.999 - . logic_name=eponine scaffold_36 . biological_region 208034 208038 0.999 - . logic_name=eponine scaffold_36 . biological_region 208077 208081 0.999 - . logic_name=eponine scaffold_36 . biological_region 208468 208469 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 204615 207390 . - . ID=Phyra79001;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000044;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 204615 207390 . - . ID=Phyra79001;Parent=Phyra79001;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 204615 205039 . - 0 ID=Phyra79001;Parent=Phyra79001;rank=2 scaffold_36 . exon 204615 205039 . - . ID=Phyra79001.2;Parent=Phyra79001;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 205080 207390 . - 0 ID=Phyra79001;Parent=Phyra79001;rank=1 scaffold_36 . exon 205080 207390 . - . ID=Phyra79001.1;Parent=Phyra79001;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 ensembl protein_coding_gene 207703 208944 . + . ID=Phyra79002;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000045;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 207703 208944 . + . ID=Phyra79002;Parent=Phyra79002;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 207703 207848 . + 0 ID=Phyra79002;Parent=Phyra79002;rank=1 scaffold_36 . exon 207703 207848 . + . ID=Phyra79002.1;Parent=Phyra79002;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 207921 208944 . + 0 ID=Phyra79002;Parent=Phyra79002;rank=2 scaffold_36 . exon 207921 208944 . + . ID=Phyra79002.2;Parent=Phyra79002;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . repeat_region 211395 211443 . ? . description=trf scaffold_36 . repeat_region 211395 211446 . ? . description=dust scaffold_36 . repeat_region 211397 211446 . ? . description=trf scaffold_36 . repeat_region 211397 211446 . ? . description=trf scaffold_36 ensembl protein_coding_gene 209378 211027 . - . ID=Phyra79003;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000046;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 209378 211027 . - . ID=Phyra79003;Parent=Phyra79003;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 209378 209432 . - 0 ID=Phyra79003;Parent=Phyra79003;rank=4 scaffold_36 . exon 209378 209432 . - . ID=Phyra79003.4;Parent=Phyra79003;constitutive=1;ensembl_phase=2;rank=4 scaffold_36 . CDS 209469 209506 . - 0 ID=Phyra79003;Parent=Phyra79003;rank=3 scaffold_36 . exon 209469 209506 . - . ID=Phyra79003.3;Parent=Phyra79003;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_36 . CDS 209678 209884 . - 0 ID=Phyra79003;Parent=Phyra79003;rank=2 scaffold_36 . exon 209678 209884 . - . ID=Phyra79003.2;Parent=Phyra79003;constitutive=1;rank=2 scaffold_36 . CDS 209927 211027 . - 0 ID=Phyra79003;Parent=Phyra79003;rank=1 scaffold_36 . exon 209927 211027 . - . ID=Phyra79003.1;Parent=Phyra79003;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 211386 212858 . - . ID=Phyra79004;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000047;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 211386 212858 . - . ID=Phyra79004;Parent=Phyra79004;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 211386 212858 . - 0 ID=Phyra79004;Parent=Phyra79004;rank=1 scaffold_36 . exon 211386 212858 . - . ID=Phyra79004.1;Parent=Phyra79004;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 213330 216002 . + . ID=Phyra79005;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000048;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 213330 216002 . + . ID=Phyra79005;Parent=Phyra79005;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 213330 216002 . + 0 ID=Phyra79005;Parent=Phyra79005;rank=1 scaffold_36 . exon 213330 216002 . + . ID=Phyra79005.1;Parent=Phyra79005;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 217001 218724 . - . ID=Phyra79006;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000049;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 217001 218724 . - . ID=Phyra79006;Parent=Phyra79006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 217001 218330 . - 0 ID=Phyra79006;Parent=Phyra79006;rank=4 scaffold_36 . exon 217001 218330 . - . ID=Phyra79006.4;Parent=Phyra79006;constitutive=1;ensembl_phase=2;rank=4 scaffold_36 . CDS 218433 218488 . - 0 ID=Phyra79006;Parent=Phyra79006;rank=3 scaffold_36 . exon 218433 218488 . - . ID=Phyra79006.3;Parent=Phyra79006;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_36 . CDS 218561 218641 . - 0 ID=Phyra79006;Parent=Phyra79006;rank=2 scaffold_36 . exon 218561 218641 . - . ID=Phyra79006.2;Parent=Phyra79006;constitutive=1;rank=2 scaffold_36 . CDS 218668 218724 . - 0 ID=Phyra79006;Parent=Phyra79006;rank=1 scaffold_36 . exon 218668 218724 . - . ID=Phyra79006.1;Parent=Phyra79006;constitutive=1;rank=1 scaffold_36 . biological_region 221609 221614 0.999 + . logic_name=eponine scaffold_36 . biological_region 222957 222958 0.999 + . logic_name=eponine scaffold_36 . biological_region 222976 222978 0.999 + . logic_name=eponine scaffold_36 . biological_region 223504 223511 0.999 + . logic_name=eponine scaffold_36 . biological_region 225149 225149 0.999 + . logic_name=eponine scaffold_36 . biological_region 225216 225220 0.999 - . logic_name=eponine scaffold_36 . biological_region 225300 225303 0.999 + . logic_name=eponine scaffold_36 . biological_region 225301 225306 0.999 - . logic_name=eponine scaffold_36 . biological_region 225351 225355 0.999 - . logic_name=eponine scaffold_36 . biological_region 225355 225358 0.999 + . logic_name=eponine scaffold_36 . biological_region 225369 225374 0.999 - . logic_name=eponine scaffold_36 . biological_region 225764 225770 0.999 - . logic_name=eponine scaffold_36 . biological_region 225844 225851 0.999 - . logic_name=eponine scaffold_36 . biological_region 227717 227719 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 220433 221965 . + . ID=Phyra79007;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000050;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 220433 221965 . + . ID=Phyra79007;Parent=Phyra79007;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 220433 221965 . + 0 ID=Phyra79007;Parent=Phyra79007;rank=1 scaffold_36 . exon 220433 221965 . + . ID=Phyra79007.1;Parent=Phyra79007;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 224326 227399 . + . ID=Phyra79008;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000051;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 224326 227399 . + . ID=Phyra79008;Parent=Phyra79008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 224326 224336 . + 0 ID=Phyra79008;Parent=Phyra79008;rank=1 scaffold_36 . exon 224326 224336 . + . ID=Phyra79008.1;Parent=Phyra79008;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 224438 227399 . + 0 ID=Phyra79008;Parent=Phyra79008;rank=2 scaffold_36 . exon 224438 227399 . + . ID=Phyra79008.2;Parent=Phyra79008;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 ensembl protein_coding_gene 227628 228200 . + . ID=Phyra79009;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000052;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 227628 228200 . + . ID=Phyra79009;Parent=Phyra79009;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 227628 228200 . + 0 ID=Phyra79009;Parent=Phyra79009;rank=1 scaffold_36 . exon 227628 228200 . + . ID=Phyra79009.1;Parent=Phyra79009;constitutive=1;rank=1 scaffold_36 . repeat_region 234758 234812 . ? . description=trf scaffold_36 . repeat_region 236150 236158 . ? . description=dust scaffold_36 . repeat_region 238395 238426 . ? . description=trf scaffold_36 ensembl protein_coding_gene 236415 238934 . + . ID=Phyra79010;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000053;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 236415 238934 . + . ID=Phyra79010;Parent=Phyra79010;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 236415 238934 . + 0 ID=Phyra79010;Parent=Phyra79010;rank=1 scaffold_36 . exon 236415 238934 . + . ID=Phyra79010.1;Parent=Phyra79010;constitutive=1;rank=1 scaffold_36 . biological_region 247830 247833 0.999 + . logic_name=eponine scaffold_36 . biological_region 247898 247901 0.999 + . logic_name=eponine scaffold_36 . biological_region 248165 248167 0.999 - . logic_name=eponine scaffold_36 . biological_region 248505 248506 0.999 - . logic_name=eponine scaffold_36 . biological_region 248529 248530 0.999 - . logic_name=eponine scaffold_36 . biological_region 248551 248553 0.999 - . logic_name=eponine scaffold_36 ensembl pseudogene 242003 243194 . - . ID=Phyra47917;biotype=pseudogene;external_name=gwEuk.36.8.1;logic_name=jgi_phyra1 scaffold_36 ensembl pseudogene 242003 243194 . - . ID=Phyra47917;Parent=Phyra47917;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_36 . exon 242003 242177 . - . ID=Phyra47917.6;Parent=Phyra47917;constitutive=1;ensembl_phase=2;rank=6 scaffold_36 . exon 242223 242298 . - . ID=Phyra47917.5;Parent=Phyra47917;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_36 . exon 242357 242563 . - . ID=Phyra47917.4;Parent=Phyra47917;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_36 . exon 242634 242727 . - . ID=Phyra47917.3;Parent=Phyra47917;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_36 . exon 242791 242842 . - . ID=Phyra47917.2;Parent=Phyra47917;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . exon 242911 243194 . - . ID=Phyra47917.1;Parent=Phyra47917;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 240649 241644 . + . ID=Phyra79012;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000055;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 240649 241644 . + . ID=Phyra79012;Parent=Phyra79012;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 240649 241644 . + 0 ID=Phyra79012;Parent=Phyra79012;rank=1 scaffold_36 . exon 240649 241644 . + . ID=Phyra79012.1;Parent=Phyra79012;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 243758 244309 . + . ID=Phyra79014;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000057;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 243758 244309 . + . ID=Phyra79014;Parent=Phyra79014;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 243758 244309 . + 0 ID=Phyra79014;Parent=Phyra79014;rank=1 scaffold_36 . exon 243758 244309 . + . ID=Phyra79014.1;Parent=Phyra79014;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 247789 250329 . + . ID=Phyra79015;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000058;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 247789 250329 . + . ID=Phyra79015;Parent=Phyra79015;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 247789 250329 . + 0 ID=Phyra79015;Parent=Phyra79015;rank=1 scaffold_36 . exon 247789 250329 . + . ID=Phyra79015.1;Parent=Phyra79015;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 239179 240503 . - . ID=Phyra95268;biotype=protein_coding;external_name=C_scaffold_36000011;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 239179 240503 . - . ID=Phyra95268;Parent=Phyra95268;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 239179 239753 . - 0 ID=Phyra95268;Parent=Phyra95268;rank=3 scaffold_36 . exon 239179 239753 . - . ID=Phyra95268.3;Parent=Phyra95268;constitutive=1;ensembl_phase=1;rank=3 scaffold_36 . CDS 239821 240178 . - 0 ID=Phyra95268;Parent=Phyra95268;rank=2 scaffold_36 . exon 239821 240178 . - . ID=Phyra95268.2;Parent=Phyra95268;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_36 . CDS 240252 240503 . - 0 ID=Phyra95268;Parent=Phyra95268;rank=1 scaffold_36 . exon 240252 240503 . - . ID=Phyra95268.1;Parent=Phyra95268;constitutive=1;rank=1 scaffold_36 . repeat_region 251368 251399 . ? . description=trf scaffold_36 ensembl protein_coding_gene 250860 253379 . - . ID=Phyra79016;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000059;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 250860 253379 . - . ID=Phyra79016;Parent=Phyra79016;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 250860 253379 . - 0 ID=Phyra79016;Parent=Phyra79016;rank=1 scaffold_36 . exon 250860 253379 . - . ID=Phyra79016.1;Parent=Phyra79016;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 254251 258327 . - . ID=Phyra79017;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000060;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 254251 258327 . - . ID=Phyra79017;Parent=Phyra79017;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 254251 254253 . - 0 ID=Phyra79017;Parent=Phyra79017;rank=4 scaffold_36 . exon 254251 254253 . - . ID=Phyra79017.4;Parent=Phyra79017;constitutive=1;rank=4 scaffold_36 . CDS 254348 255110 . - 0 ID=Phyra79017;Parent=Phyra79017;rank=3 scaffold_36 . exon 254348 255110 . - . ID=Phyra79017.3;Parent=Phyra79017;constitutive=1;ensembl_phase=2;rank=3 scaffold_36 . CDS 255522 257506 . - 0 ID=Phyra79017;Parent=Phyra79017;rank=2 scaffold_36 . exon 255522 257506 . - . ID=Phyra79017.2;Parent=Phyra79017;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_36 . CDS 257566 258327 . - 0 ID=Phyra79017;Parent=Phyra79017;rank=1 scaffold_36 . exon 257566 258327 . - . ID=Phyra79017.1;Parent=Phyra79017;constitutive=1;rank=1 scaffold_36 . repeat_region 259206 259331 . ? . description=dust scaffold_36 . biological_region 260769 260774 0.999 + . logic_name=eponine scaffold_36 . biological_region 268000 268001 0.999 + . logic_name=eponine scaffold_36 . biological_region 268007 268011 0.999 + . logic_name=eponine scaffold_36 . biological_region 268093 268093 0.999 - . logic_name=eponine scaffold_36 . biological_region 268123 268128 0.999 - . logic_name=eponine scaffold_36 ensembl tRNA_gene 266362 266434 . - . ID=EPrPRAG00000000113;biotype=tRNA;description=tRNA-Arg for anticodon CCU [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_36 ensembl transcript 266362 266434 . - . ID=EPrPRAT00000000113;Parent=EPrPRAG00000000113;biotype=tRNA;logic_name=ncrna_eg scaffold_36 . exon 266362 266434 . - . ID=EPrPRAE00000000113;Parent=EPrPRAT00000000113;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 ensembl protein_coding_gene 258808 261406 . + . ID=Phyra79018;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000061;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 258808 261406 . + . ID=Phyra79018;Parent=Phyra79018;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 258808 258816 . + 0 ID=Phyra79018;Parent=Phyra79018;rank=1 scaffold_36 . exon 258808 258816 . + . ID=Phyra79018.1;Parent=Phyra79018;constitutive=1;rank=1 scaffold_36 . CDS 259391 261406 . + 0 ID=Phyra79018;Parent=Phyra79018;rank=2 scaffold_36 . exon 259391 261406 . + . ID=Phyra79018.2;Parent=Phyra79018;constitutive=1;rank=2 scaffold_36 ensembl protein_coding_gene 262404 263108 . - . ID=Phyra79019;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000062;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 262404 263108 . - . ID=Phyra79019;Parent=Phyra79019;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 262404 263108 . - 0 ID=Phyra79019;Parent=Phyra79019;rank=1 scaffold_36 . exon 262404 263108 . - . ID=Phyra79019.1;Parent=Phyra79019;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 263543 264226 . + . ID=Phyra79020;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000063;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 263543 264226 . + . ID=Phyra79020;Parent=Phyra79020;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 263543 264226 . + 0 ID=Phyra79020;Parent=Phyra79020;rank=1 scaffold_36 . exon 263543 264226 . + . ID=Phyra79020.1;Parent=Phyra79020;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 264369 266189 . - . ID=Phyra79021;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000064;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 264369 266189 . - . ID=Phyra79021;Parent=Phyra79021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 264369 266189 . - 0 ID=Phyra79021;Parent=Phyra79021;rank=1 scaffold_36 . exon 264369 266189 . - . ID=Phyra79021.1;Parent=Phyra79021;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 266796 267491 . - . ID=Phyra95274;biotype=protein_coding;external_name=C_scaffold_36000017;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 266796 267491 . - . ID=Phyra95274;Parent=Phyra95274;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 266796 266807 . - 0 ID=Phyra95274;Parent=Phyra95274;rank=3 scaffold_36 . exon 266796 266807 . - . ID=Phyra95274.3;Parent=Phyra95274;constitutive=1;rank=3 scaffold_36 . CDS 266853 267086 . - 0 ID=Phyra95274;Parent=Phyra95274;rank=2 scaffold_36 . exon 266853 267086 . - . ID=Phyra95274.2;Parent=Phyra95274;constitutive=1;rank=2 scaffold_36 . CDS 267144 267491 . - 0 ID=Phyra95274;Parent=Phyra95274;rank=1 scaffold_36 . exon 267144 267491 . - . ID=Phyra95274.1;Parent=Phyra95274;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 267937 268287 . + . ID=Phyra95275;biotype=protein_coding;external_name=C_scaffold_36000018;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 267937 268287 . + . ID=Phyra95275;Parent=Phyra95275;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 267937 268096 . + 0 ID=Phyra95275;Parent=Phyra95275;rank=1 scaffold_36 . exon 267937 268096 . + . ID=Phyra95275.1;Parent=Phyra95275;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 268202 268287 . + 0 ID=Phyra95275;Parent=Phyra95275;rank=2 scaffold_36 . exon 268202 268287 . + . ID=Phyra95275.2;Parent=Phyra95275;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 ensembl protein_coding_gene 268598 270671 . - . ID=Phyra79023;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000066;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 268598 270671 . - . ID=Phyra79023;Parent=Phyra79023;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 268598 269460 . - 0 ID=Phyra79023;Parent=Phyra79023;rank=2 scaffold_36 . exon 268598 269460 . - . ID=Phyra79023.2;Parent=Phyra79023;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 269501 270671 . - 0 ID=Phyra79023;Parent=Phyra79023;rank=1 scaffold_36 . exon 269501 270671 . - . ID=Phyra79023.1;Parent=Phyra79023;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 ensembl protein_coding_gene 271534 273425 . + . ID=Phyra79024;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000067;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 271534 273425 . + . ID=Phyra79024;Parent=Phyra79024;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 271534 272019 . + 0 ID=Phyra79024;Parent=Phyra79024;rank=1 scaffold_36 . exon 271534 272019 . + . ID=Phyra79024.1;Parent=Phyra79024;constitutive=1;rank=1 scaffold_36 . CDS 272112 272222 . + 0 ID=Phyra79024;Parent=Phyra79024;rank=2 scaffold_36 . exon 272112 272222 . + . ID=Phyra79024.2;Parent=Phyra79024;constitutive=1;rank=2 scaffold_36 . CDS 272285 272385 . + 0 ID=Phyra79024;Parent=Phyra79024;rank=3 scaffold_36 . exon 272285 272385 . + . ID=Phyra79024.3;Parent=Phyra79024;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_36 . CDS 272469 272635 . + 0 ID=Phyra79024;Parent=Phyra79024;rank=4 scaffold_36 . exon 272469 272635 . + . ID=Phyra79024.4;Parent=Phyra79024;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_36 . CDS 272993 273033 . + 0 ID=Phyra79024;Parent=Phyra79024;rank=5 scaffold_36 . exon 272993 273033 . + . ID=Phyra79024.5;Parent=Phyra79024;constitutive=1;ensembl_phase=1;rank=5 scaffold_36 . CDS 273238 273260 . + 0 ID=Phyra79024;Parent=Phyra79024;rank=6 scaffold_36 . exon 273238 273260 . + . ID=Phyra79024.6;Parent=Phyra79024;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_36 . CDS 273359 273425 . + 0 ID=Phyra79024;Parent=Phyra79024;rank=7 scaffold_36 . exon 273359 273425 . + . ID=Phyra79024.7;Parent=Phyra79024;constitutive=1;ensembl_phase=2;rank=7 scaffold_36 ensembl protein_coding_gene 277818 278732 . - . ID=Phyra79025;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000068;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 277818 278732 . - . ID=Phyra79025;Parent=Phyra79025;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 277818 278732 . - 0 ID=Phyra79025;Parent=Phyra79025;rank=1 scaffold_36 . exon 277818 278732 . - . ID=Phyra79025.1;Parent=Phyra79025;constitutive=1;rank=1 scaffold_36 . repeat_region 279060 279072 . ? . description=dust scaffold_36 . biological_region 280338 280340 0.999 + . logic_name=eponine scaffold_36 . biological_region 281176 281179 0.999 + . logic_name=eponine scaffold_36 . biological_region 281266 281266 0.999 - . logic_name=eponine scaffold_36 . repeat_region 283919 283929 . ? . description=dust scaffold_36 . biological_region 286048 286051 0.999 + . logic_name=eponine scaffold_36 . biological_region 286534 286534 0.999 + . logic_name=eponine scaffold_36 . biological_region 286640 286643 0.999 + . logic_name=eponine scaffold_36 . biological_region 287550 287555 0.999 + . logic_name=eponine scaffold_36 . biological_region 288084 288086 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 282656 284066 . - . ID=Phyra71674;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_36000003;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 282656 284066 . - . ID=Phyra71674;Parent=Phyra71674;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 282656 283540 . - 0 ID=Phyra71674;Parent=Phyra71674;rank=3 scaffold_36 . exon 282656 283540 . - . ID=Phyra71674.3;Parent=Phyra71674;constitutive=1;rank=3 scaffold_36 . CDS 283614 283911 . - 0 ID=Phyra71674;Parent=Phyra71674;rank=2 scaffold_36 . exon 283614 283911 . - . ID=Phyra71674.2;Parent=Phyra71674;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 283933 284066 . - 0 ID=Phyra71674;Parent=Phyra71674;rank=1 scaffold_36 . exon 283933 284066 . - . ID=Phyra71674.1;Parent=Phyra71674;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 279850 282258 . - . ID=Phyra79026;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000069;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 279850 282258 . - . ID=Phyra79026;Parent=Phyra79026;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 279850 282258 . - 0 ID=Phyra79026;Parent=Phyra79026;rank=1 scaffold_36 . exon 279850 282258 . - . ID=Phyra79026.1;Parent=Phyra79026;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 284422 286697 . - . ID=Phyra79028;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000071;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 284422 286697 . - . ID=Phyra79028;Parent=Phyra79028;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 284422 284777 . - 0 ID=Phyra79028;Parent=Phyra79028;rank=3 scaffold_36 . exon 284422 284777 . - . ID=Phyra79028.3;Parent=Phyra79028;constitutive=1;ensembl_phase=1;rank=3 scaffold_36 . CDS 284858 285037 . - 0 ID=Phyra79028;Parent=Phyra79028;rank=2 scaffold_36 . exon 284858 285037 . - . ID=Phyra79028.2;Parent=Phyra79028;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 285116 286697 . - 0 ID=Phyra79028;Parent=Phyra79028;rank=1 scaffold_36 . exon 285116 286697 . - . ID=Phyra79028.1;Parent=Phyra79028;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 ensembl protein_coding_gene 287239 287559 . - . ID=Phyra79029;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000072;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 287239 287559 . - . ID=Phyra79029;Parent=Phyra79029;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 287239 287559 . - 0 ID=Phyra79029;Parent=Phyra79029;rank=1 scaffold_36 . exon 287239 287559 . - . ID=Phyra79029.1;Parent=Phyra79029;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 291514 292482 . + . ID=Phyra47942;biotype=protein_coding;external_name=gwEuk.36.33.1;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 291514 292482 . + . ID=Phyra47942;Parent=Phyra47942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 291514 292482 . + 0 ID=Phyra47942;Parent=Phyra47942;rank=1 scaffold_36 . exon 291514 292482 . + . ID=Phyra47942.1;Parent=Phyra47942;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 294966 296480 . - . ID=Phyra47948;biotype=protein_coding;external_name=gwEuk.36.39.1;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 294966 296480 . - . ID=Phyra47948;Parent=Phyra47948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 294966 296480 . - 0 ID=Phyra47948;Parent=Phyra47948;rank=1 scaffold_36 . exon 294966 296480 . - . ID=Phyra47948.1;Parent=Phyra47948;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 292667 294430 . - . ID=Phyra71676;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_36000005;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 292667 294430 . - . ID=Phyra71676;Parent=Phyra71676;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 292667 294430 . - 0 ID=Phyra71676;Parent=Phyra71676;rank=1 scaffold_36 . exon 292667 294430 . - . ID=Phyra71676.1;Parent=Phyra71676;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 290002 291255 . + . ID=Phyra79030;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000073;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 290002 291255 . + . ID=Phyra79030;Parent=Phyra79030;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 290002 291255 . + 0 ID=Phyra79030;Parent=Phyra79030;rank=1 scaffold_36 . exon 290002 291255 . + . ID=Phyra79030.1;Parent=Phyra79030;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 297813 298720 . + . ID=Phyra79034;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000077;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 297813 298720 . + . ID=Phyra79034;Parent=Phyra79034;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 297813 298227 . + 0 ID=Phyra79034;Parent=Phyra79034;rank=1 scaffold_36 . exon 297813 298227 . + . ID=Phyra79034.1;Parent=Phyra79034;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 298286 298335 . + 0 ID=Phyra79034;Parent=Phyra79034;rank=2 scaffold_36 . exon 298286 298335 . + . ID=Phyra79034.2;Parent=Phyra79034;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 298487 298720 . + 0 ID=Phyra79034;Parent=Phyra79034;rank=3 scaffold_36 . repeat_region 300553 300560 . ? . description=dust scaffold_36 . repeat_region 300563 300576 . ? . description=dust scaffold_36 . biological_region 301026 301031 0.999 + . logic_name=eponine scaffold_36 . repeat_region 305987 306003 . ? . description=dust scaffold_36 . biological_region 306897 306903 0.999 - . logic_name=eponine scaffold_36 . exon 298487 298720 . + . ID=Phyra79034.3;Parent=Phyra79034;constitutive=1;rank=3 scaffold_36 ensembl protein_coding_gene 298954 300309 . - . ID=Phyra79035;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000078;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 298954 300309 . - . ID=Phyra79035;Parent=Phyra79035;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 298954 300309 . - 0 ID=Phyra79035;Parent=Phyra79035;rank=1 scaffold_36 . exon 298954 300309 . - . ID=Phyra79035.1;Parent=Phyra79035;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 300734 302507 . - . ID=Phyra79036;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000079;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 300734 302507 . - . ID=Phyra79036;Parent=Phyra79036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 300734 301158 . - 0 ID=Phyra79036;Parent=Phyra79036;rank=4 scaffold_36 . exon 300734 301158 . - . ID=Phyra79036.4;Parent=Phyra79036;constitutive=1;ensembl_phase=1;rank=4 scaffold_36 . CDS 301234 301252 . - 0 ID=Phyra79036;Parent=Phyra79036;rank=3 scaffold_36 . exon 301234 301252 . - . ID=Phyra79036.3;Parent=Phyra79036;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_36 . CDS 301381 302314 . - 0 ID=Phyra79036;Parent=Phyra79036;rank=2 scaffold_36 . exon 301381 302314 . - . ID=Phyra79036.2;Parent=Phyra79036;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 302401 302507 . - 0 ID=Phyra79036;Parent=Phyra79036;rank=1 scaffold_36 . exon 302401 302507 . - . ID=Phyra79036.1;Parent=Phyra79036;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 303921 305932 . + . ID=Phyra79037;biotype=protein_coding;description=Cell 5A endo-1%2C4-betaglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q0PMZ8];external_name=EGL-V.3;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 303921 305932 . + . ID=Phyra79037;Parent=Phyra79037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 303921 304364 . + 0 ID=Phyra79037;Parent=Phyra79037;rank=1 scaffold_36 . exon 303921 304364 . + . ID=Phyra79037.1;Parent=Phyra79037;constitutive=1;rank=1 scaffold_36 . CDS 304436 305932 . + 0 ID=Phyra79037;Parent=Phyra79037;rank=2 scaffold_36 . exon 304436 305932 . + . ID=Phyra79037.2;Parent=Phyra79037;constitutive=1;rank=2 scaffold_36 ensembl protein_coding_gene 306682 308747 . + . ID=Phyra79038;biotype=protein_coding;description=Cell 5A endo-1%2C4-betaglucanase [Source:UniProtKB/TrEMBL%3BAcc:A1YT26];external_name=EGL-V.4;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 306682 308747 . + . ID=Phyra79038;Parent=Phyra79038;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 306682 307110 . + 0 ID=Phyra79038;Parent=Phyra79038;rank=1 scaffold_36 . exon 306682 307110 . + . ID=Phyra79038.1;Parent=Phyra79038;constitutive=1;rank=1 scaffold_36 . CDS 307177 308199 . + 0 ID=Phyra79038;Parent=Phyra79038;rank=2 scaffold_36 . exon 307177 308199 . + . ID=Phyra79038.2;Parent=Phyra79038;constitutive=1;rank=2 scaffold_36 . CDS 308268 308747 . + 0 ID=Phyra79038;Parent=Phyra79038;rank=3 scaffold_36 . exon 308268 308747 . + . ID=Phyra79038.3;Parent=Phyra79038;constitutive=1;rank=3 scaffold_36 . repeat_region 312503 312525 . ? . description=trf scaffold_36 ensembl protein_coding_gene 312712 313431 . + . ID=Phyra71677;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_36000006;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 312712 313431 . + . ID=Phyra71677;Parent=Phyra71677;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 312712 313431 . + 0 ID=Phyra71677;Parent=Phyra71677;rank=1 scaffold_36 . exon 312712 313431 . + . ID=Phyra71677.1;Parent=Phyra71677;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 313573 314377 . - . ID=Phyra79040;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000083;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 313573 314377 . - . ID=Phyra79040;Parent=Phyra79040;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 313573 314264 . - 0 ID=Phyra79040;Parent=Phyra79040;rank=2 scaffold_36 . exon 313573 314264 . - . ID=Phyra79040.2;Parent=Phyra79040;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 314326 314377 . - 0 ID=Phyra79040;Parent=Phyra79040;rank=1 scaffold_36 . exon 314326 314377 . - . ID=Phyra79040.1;Parent=Phyra79040;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 ensembl protein_coding_gene 315407 316517 . + . ID=Phyra79041;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000084;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 315407 316517 . + . ID=Phyra79041;Parent=Phyra79041;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 315407 315619 . + 0 ID=Phyra79041;Parent=Phyra79041;rank=1 scaffold_36 . exon 315407 315619 . + . ID=Phyra79041.1;Parent=Phyra79041;constitutive=1;rank=1 scaffold_36 . CDS 315692 315994 . + 0 ID=Phyra79041;Parent=Phyra79041;rank=2 scaffold_36 . exon 315692 315994 . + . ID=Phyra79041.2;Parent=Phyra79041;constitutive=1;rank=2 scaffold_36 . CDS 316038 316517 . + 0 ID=Phyra79041;Parent=Phyra79041;rank=3 scaffold_36 . exon 316038 316517 . + . ID=Phyra79041.3;Parent=Phyra79041;constitutive=1;rank=3 scaffold_36 ensembl protein_coding_gene 317499 319157 . + . ID=Phyra79042;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000085;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 317499 319157 . + . ID=Phyra79042;Parent=Phyra79042;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 317499 319157 . + 0 ID=Phyra79042;Parent=Phyra79042;rank=1 scaffold_36 . exon 317499 319157 . + . ID=Phyra79042.1;Parent=Phyra79042;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 326953 329511 . - . ID=Phyra79043;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000086;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 326953 329511 . - . ID=Phyra79043;Parent=Phyra79043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 326953 329511 . - 0 ID=Phyra79043;Parent=Phyra79043;rank=1 scaffold_36 . exon 326953 329511 . - . ID=Phyra79043.1;Parent=Phyra79043;constitutive=1;rank=1 scaffold_36 . biological_region 329964 329966 0.999 + . logic_name=eponine scaffold_36 . biological_region 330011 330014 0.999 - . logic_name=eponine scaffold_36 . biological_region 331755 331757 0.999 - . logic_name=eponine scaffold_36 . biological_region 334071 334071 0.999 - . logic_name=eponine scaffold_36 . biological_region 334723 334727 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 330174 332708 . + . ID=Phyra79044;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000087;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 330174 332708 . + . ID=Phyra79044;Parent=Phyra79044;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 330174 332708 . + 0 ID=Phyra79044;Parent=Phyra79044;rank=1 scaffold_36 . exon 330174 332708 . + . ID=Phyra79044.1;Parent=Phyra79044;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 333013 334587 . - . ID=Phyra79045;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000088;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 333013 334587 . - . ID=Phyra79045;Parent=Phyra79045;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 333013 334587 . - 0 ID=Phyra79045;Parent=Phyra79045;rank=1 scaffold_36 . exon 333013 334587 . - . ID=Phyra79045.1;Parent=Phyra79045;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 334986 336623 . - . ID=Phyra79046;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000089;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 334986 336623 . - . ID=Phyra79046;Parent=Phyra79046;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 334986 336623 . - 0 ID=Phyra79046;Parent=Phyra79046;rank=1 scaffold_36 . exon 334986 336623 . - . ID=Phyra79046.1;Parent=Phyra79046;constitutive=1;rank=1 scaffold_36 . repeat_region 338629 338669 . ? . description=dust scaffold_36 . repeat_region 338631 338669 . ? . description=trf scaffold_36 . repeat_region 338631 338669 . ? . description=trf scaffold_36 . repeat_region 343382 343421 . ? . description=trf scaffold_36 . repeat_region 346621 346640 . ? . description=trf scaffold_36 . repeat_region 346621 346640 . ? . description=dust scaffold_36 . repeat_region 346747 346772 . ? . description=trf scaffold_36 . repeat_region 346747 346772 . ? . description=dust scaffold_36 ensembl protein_coding_gene 338313 338939 . + . ID=Phyra79047;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000090;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 338313 338939 . + . ID=Phyra79047;Parent=Phyra79047;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 338313 338939 . + 0 ID=Phyra79047;Parent=Phyra79047;rank=1 scaffold_36 . exon 338313 338939 . + . ID=Phyra79047.1;Parent=Phyra79047;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 339035 340384 . - . ID=Phyra79048;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000091;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 339035 340384 . - . ID=Phyra79048;Parent=Phyra79048;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 339035 340384 . - 0 ID=Phyra79048;Parent=Phyra79048;rank=1 scaffold_36 . exon 339035 340384 . - . ID=Phyra79048.1;Parent=Phyra79048;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 341640 343343 . - . ID=Phyra79049;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000092;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 341640 343343 . - . ID=Phyra79049;Parent=Phyra79049;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 341640 343343 . - 0 ID=Phyra79049;Parent=Phyra79049;rank=1 scaffold_36 . exon 341640 343343 . - . ID=Phyra79049.1;Parent=Phyra79049;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 343800 344714 . + . ID=Phyra79050;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000093;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 343800 344714 . + . ID=Phyra79050;Parent=Phyra79050;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 343800 344714 . + 0 ID=Phyra79050;Parent=Phyra79050;rank=1 scaffold_36 . exon 343800 344714 . + . ID=Phyra79050.1;Parent=Phyra79050;constitutive=1;rank=1 scaffold_36 . biological_region 348924 348928 0.999 + . logic_name=eponine scaffold_36 . biological_region 350439 350442 0.999 + . logic_name=eponine scaffold_36 . biological_region 350490 350493 0.999 + . logic_name=eponine scaffold_36 . biological_region 350592 350596 0.999 + . logic_name=eponine scaffold_36 . biological_region 350647 350648 0.999 + . logic_name=eponine scaffold_36 . biological_region 354501 354504 0.999 + . logic_name=eponine scaffold_36 ensembl protein_coding_gene 349714 351886 . + . ID=Phyra79051;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000094;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 349714 351886 . + . ID=Phyra79051;Parent=Phyra79051;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 349714 349791 . + 0 ID=Phyra79051;Parent=Phyra79051;rank=1 scaffold_36 . exon 349714 349791 . + . ID=Phyra79051.1;Parent=Phyra79051;constitutive=1;rank=1 scaffold_36 . CDS 349993 350179 . + 0 ID=Phyra79051;Parent=Phyra79051;rank=2 scaffold_36 . exon 349993 350179 . + . ID=Phyra79051.2;Parent=Phyra79051;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_36 . CDS 350357 351575 . + 0 ID=Phyra79051;Parent=Phyra79051;rank=3 scaffold_36 . exon 350357 351575 . + . ID=Phyra79051.3;Parent=Phyra79051;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_36 . CDS 351832 351886 . + 0 ID=Phyra79051;Parent=Phyra79051;rank=4 scaffold_36 . exon 351832 351886 . + . ID=Phyra79051.4;Parent=Phyra79051;constitutive=1;ensembl_phase=2;rank=4 scaffold_36 ensembl protein_coding_gene 355537 356100 . + . ID=Phyra79052;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000095;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 355537 356100 . + . ID=Phyra79052;Parent=Phyra79052;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 355537 356100 . + 0 ID=Phyra79052;Parent=Phyra79052;rank=1 scaffold_36 . exon 355537 356100 . + . ID=Phyra79052.1;Parent=Phyra79052;constitutive=1;rank=1 scaffold_36 . repeat_region 365360 365367 . ? . description=dust scaffold_36 ensembl protein_coding_gene 363638 364574 . + . ID=Phyra79053;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000096;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 363638 364574 . + . ID=Phyra79053;Parent=Phyra79053;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 363638 364014 . + 0 ID=Phyra79053;Parent=Phyra79053;rank=1 scaffold_36 . exon 363638 364014 . + . ID=Phyra79053.1;Parent=Phyra79053;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 364099 364287 . + 0 ID=Phyra79053;Parent=Phyra79053;rank=2 scaffold_36 . exon 364099 364287 . + . ID=Phyra79053.2;Parent=Phyra79053;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_36 . CDS 364454 364574 . + 0 ID=Phyra79053;Parent=Phyra79053;rank=3 scaffold_36 . exon 364454 364574 . + . ID=Phyra79053.3;Parent=Phyra79053;constitutive=1;ensembl_phase=2;rank=3 scaffold_36 ensembl protein_coding_gene 366694 368603 . - . ID=Phyra79054;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000097;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 366694 368603 . - . ID=Phyra79054;Parent=Phyra79054;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 366694 367239 . - 0 ID=Phyra79054;Parent=Phyra79054;rank=4 scaffold_36 . exon 366694 367239 . - . ID=Phyra79054.4;Parent=Phyra79054;constitutive=1;rank=4 scaffold_36 . CDS 367313 367448 . - 0 ID=Phyra79054;Parent=Phyra79054;rank=3 scaffold_36 . exon 367313 367448 . - . ID=Phyra79054.3;Parent=Phyra79054;constitutive=1;ensembl_phase=2;rank=3 scaffold_36 . CDS 367514 368426 . - 0 ID=Phyra79054;Parent=Phyra79054;rank=2 scaffold_36 . exon 367514 368426 . - . ID=Phyra79054.2;Parent=Phyra79054;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_36 . CDS 368507 368603 . - 0 ID=Phyra79054;Parent=Phyra79054;rank=1 scaffold_36 . biological_region 369616 369617 0.999 + . logic_name=eponine scaffold_36 . biological_region 369701 369702 0.999 - . logic_name=eponine scaffold_36 . biological_region 369961 369961 0.999 + . logic_name=eponine scaffold_36 ensembl protein_coding_gene 369046 369512 . + . ID=Phyra71678;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_36000007;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 369046 369512 . + . ID=Phyra71678;Parent=Phyra71678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 369046 369093 . + 0 ID=Phyra71678;Parent=Phyra71678;rank=1 scaffold_36 . exon 369046 369093 . + . ID=Phyra71678.1;Parent=Phyra71678;constitutive=1;rank=1 scaffold_36 . CDS 369162 369309 . + 0 ID=Phyra71678;Parent=Phyra71678;rank=2 scaffold_36 . exon 369162 369309 . + . ID=Phyra71678.2;Parent=Phyra71678;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_36 . CDS 369391 369512 . + 0 ID=Phyra71678;Parent=Phyra71678;rank=3 scaffold_36 . exon 369391 369512 . + . ID=Phyra71678.3;Parent=Phyra71678;constitutive=1;ensembl_phase=1;rank=3 scaffold_36 . exon 368507 368603 . - . ID=Phyra79054.1;Parent=Phyra79054;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 ensembl protein_coding_gene 369631 371220 . - . ID=Phyra79056;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000099;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 369631 371220 . - . ID=Phyra79056;Parent=Phyra79056;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 369631 371220 . - 0 ID=Phyra79056;Parent=Phyra79056;rank=1 scaffold_36 . exon 369631 371220 . - . ID=Phyra79056.1;Parent=Phyra79056;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 372055 377824 . + . ID=Phyra95285;biotype=protein_coding;external_name=C_scaffold_36000028;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 372055 377824 . + . ID=Phyra95285;Parent=Phyra95285;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 372055 372254 . + 0 ID=Phyra95285;Parent=Phyra95285;rank=1 scaffold_36 . exon 372055 372254 . + . ID=Phyra95285.1;Parent=Phyra95285;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 372306 372519 . + 0 ID=Phyra95285;Parent=Phyra95285;rank=2 scaffold_36 . exon 372306 372519 . + . ID=Phyra95285.2;Parent=Phyra95285;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 372679 372833 . + 0 ID=Phyra95285;Parent=Phyra95285;rank=3 scaffold_36 . exon 372679 372833 . + . ID=Phyra95285.3;Parent=Phyra95285;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_36 . CDS 373203 373284 . + 0 ID=Phyra95285;Parent=Phyra95285;rank=4 scaffold_36 . exon 373203 373284 . + . ID=Phyra95285.4;Parent=Phyra95285;constitutive=1;ensembl_phase=2;rank=4 scaffold_36 . CDS 373330 373444 . + 0 ID=Phyra95285;Parent=Phyra95285;rank=5 scaffold_36 . exon 373330 373444 . + . ID=Phyra95285.5;Parent=Phyra95285;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_36 . CDS 373787 373997 . + 0 ID=Phyra95285;Parent=Phyra95285;rank=6 scaffold_36 . exon 373787 373997 . + . ID=Phyra95285.6;Parent=Phyra95285;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_36 . CDS 374034 374114 . + 0 ID=Phyra95285;Parent=Phyra95285;rank=7 scaffold_36 . exon 374034 374114 . + . ID=Phyra95285.7;Parent=Phyra95285;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_36 . CDS 374259 374669 . + 0 ID=Phyra95285;Parent=Phyra95285;rank=8 scaffold_36 . exon 374259 374669 . + . ID=Phyra95285.8;Parent=Phyra95285;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_36 . CDS 374793 375556 . + 0 ID=Phyra95285;Parent=Phyra95285;rank=9 scaffold_36 . exon 374793 375556 . + . ID=Phyra95285.9;Parent=Phyra95285;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_36 . CDS 375590 376149 . + 0 ID=Phyra95285;Parent=Phyra95285;rank=10 scaffold_36 . exon 375590 376149 . + . ID=Phyra95285.10;Parent=Phyra95285;constitutive=1;ensembl_phase=1;rank=10 scaffold_36 . CDS 376571 376864 . + 0 ID=Phyra95285;Parent=Phyra95285;rank=11 scaffold_36 . exon 376571 376864 . + . ID=Phyra95285.11;Parent=Phyra95285;constitutive=1;rank=11 scaffold_36 . CDS 376910 377824 . + 0 ID=Phyra95285;Parent=Phyra95285;rank=12 scaffold_36 . exon 376910 377824 . + . ID=Phyra95285.12;Parent=Phyra95285;constitutive=1;rank=12 scaffold_36 . repeat_region 381005 381014 . ? . description=dust scaffold_36 . repeat_region 382809 382858 . ? . description=dust scaffold_36 . repeat_region 387006 387016 . ? . description=dust scaffold_36 ensembl protein_coding_gene 380262 381269 . - . ID=Phyra79058;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000101;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 380262 381269 . - . ID=Phyra79058;Parent=Phyra79058;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 380262 380396 . - 0 ID=Phyra79058;Parent=Phyra79058;rank=5 scaffold_36 . exon 380262 380396 . - . ID=Phyra79058.5;Parent=Phyra79058;constitutive=1;rank=5 scaffold_36 . CDS 380461 380544 . - 0 ID=Phyra79058;Parent=Phyra79058;rank=4 scaffold_36 . exon 380461 380544 . - . ID=Phyra79058.4;Parent=Phyra79058;constitutive=1;rank=4 scaffold_36 . CDS 380609 380671 . - 0 ID=Phyra79058;Parent=Phyra79058;rank=3 scaffold_36 . exon 380609 380671 . - . ID=Phyra79058.3;Parent=Phyra79058;constitutive=1;rank=3 scaffold_36 . CDS 380734 380997 . - 0 ID=Phyra79058;Parent=Phyra79058;rank=2 scaffold_36 . exon 380734 380997 . - . ID=Phyra79058.2;Parent=Phyra79058;constitutive=1;rank=2 scaffold_36 . CDS 381054 381269 . - 0 ID=Phyra79058;Parent=Phyra79058;rank=1 scaffold_36 . exon 381054 381269 . - . ID=Phyra79058.1;Parent=Phyra79058;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 381405 381968 . - . ID=Phyra79059;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000102;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 381405 381968 . - . ID=Phyra79059;Parent=Phyra79059;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 381405 381968 . - 0 ID=Phyra79059;Parent=Phyra79059;rank=1 scaffold_36 . exon 381405 381968 . - . ID=Phyra79059.1;Parent=Phyra79059;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 382239 382763 . - . ID=Phyra79060;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000103;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 382239 382763 . - . ID=Phyra79060;Parent=Phyra79060;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 382239 382763 . - 0 ID=Phyra79060;Parent=Phyra79060;rank=1 scaffold_36 . exon 382239 382763 . - . ID=Phyra79060.1;Parent=Phyra79060;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 386307 386870 . + . ID=Phyra79061;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000104;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 386307 386870 . + . ID=Phyra79061;Parent=Phyra79061;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 386307 386870 . + 0 ID=Phyra79061;Parent=Phyra79061;rank=1 scaffold_36 . exon 386307 386870 . + . ID=Phyra79061.1;Parent=Phyra79061;constitutive=1;rank=1 scaffold_36 . repeat_region 393614 393639 . ? . description=trf scaffold_36 ensembl protein_coding_gene 391050 392053 . - . ID=Phyra79062;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000105;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 391050 392053 . - . ID=Phyra79062;Parent=Phyra79062;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 391050 391184 . - 0 ID=Phyra79062;Parent=Phyra79062;rank=5 scaffold_36 . exon 391050 391184 . - . ID=Phyra79062.5;Parent=Phyra79062;constitutive=1;rank=5 scaffold_36 . CDS 391247 391330 . - 0 ID=Phyra79062;Parent=Phyra79062;rank=4 scaffold_36 . exon 391247 391330 . - . ID=Phyra79062.4;Parent=Phyra79062;constitutive=1;rank=4 scaffold_36 . CDS 391395 391457 . - 0 ID=Phyra79062;Parent=Phyra79062;rank=3 scaffold_36 . exon 391395 391457 . - . ID=Phyra79062.3;Parent=Phyra79062;constitutive=1;rank=3 scaffold_36 . CDS 391520 391783 . - 0 ID=Phyra79062;Parent=Phyra79062;rank=2 scaffold_36 . exon 391520 391783 . - . ID=Phyra79062.2;Parent=Phyra79062;constitutive=1;rank=2 scaffold_36 . CDS 391838 392053 . - 0 ID=Phyra79062;Parent=Phyra79062;rank=1 scaffold_36 . exon 391838 392053 . - . ID=Phyra79062.1;Parent=Phyra79062;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 392189 392752 . - . ID=Phyra79063;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000106;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 392189 392752 . - . ID=Phyra79063;Parent=Phyra79063;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 392189 392752 . - 0 ID=Phyra79063;Parent=Phyra79063;rank=1 scaffold_36 . exon 392189 392752 . - . ID=Phyra79063.1;Parent=Phyra79063;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 393023 393547 . - . ID=Phyra79064;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000107;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 393023 393547 . - . ID=Phyra79064;Parent=Phyra79064;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 393023 393547 . - 0 ID=Phyra79064;Parent=Phyra79064;rank=1 scaffold_36 . exon 393023 393547 . - . ID=Phyra79064.1;Parent=Phyra79064;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 393966 395546 . + . ID=Phyra79065;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000108;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 393966 395546 . + . ID=Phyra79065;Parent=Phyra79065;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 393966 395546 . + 0 ID=Phyra79065;Parent=Phyra79065;rank=1 scaffold_36 . exon 393966 395546 . + . ID=Phyra79065.1;Parent=Phyra79065;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 395749 398010 . - . ID=Phyra79066;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000109;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 395749 398010 . - . ID=Phyra79066;Parent=Phyra79066;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 395749 398010 . - 0 ID=Phyra79066;Parent=Phyra79066;rank=1 scaffold_36 . exon 395749 398010 . - . ID=Phyra79066.1;Parent=Phyra79066;constitutive=1;rank=1 scaffold_36 . biological_region 399707 399710 0.999 - . logic_name=eponine scaffold_36 . repeat_region 403303 403313 . ? . description=dust scaffold_36 . biological_region 405444 405445 0.999 + . logic_name=eponine scaffold_36 . biological_region 405580 405583 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 399538 400277 . + . ID=Phyra79067;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000110;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 399538 400277 . + . ID=Phyra79067;Parent=Phyra79067;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 399538 400194 . + 0 ID=Phyra79067;Parent=Phyra79067;rank=1 scaffold_36 . exon 399538 400194 . + . ID=Phyra79067.1;Parent=Phyra79067;constitutive=1;rank=1 scaffold_36 . CDS 400275 400277 . + 0 ID=Phyra79067;Parent=Phyra79067;rank=2 scaffold_36 . exon 400275 400277 . + . ID=Phyra79067.2;Parent=Phyra79067;constitutive=1;rank=2 scaffold_36 ensembl protein_coding_gene 400513 402709 . - . ID=Phyra79068;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000111;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 400513 402709 . - . ID=Phyra79068;Parent=Phyra79068;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 400513 401924 . - 0 ID=Phyra79068;Parent=Phyra79068;rank=4 scaffold_36 . exon 400513 401924 . - . ID=Phyra79068.4;Parent=Phyra79068;constitutive=1;ensembl_phase=1;rank=4 scaffold_36 . CDS 402025 402177 . - 0 ID=Phyra79068;Parent=Phyra79068;rank=3 scaffold_36 . exon 402025 402177 . - . ID=Phyra79068.3;Parent=Phyra79068;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_36 . CDS 402363 402473 . - 0 ID=Phyra79068;Parent=Phyra79068;rank=2 scaffold_36 . exon 402363 402473 . - . ID=Phyra79068.2;Parent=Phyra79068;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 402544 402709 . - 0 ID=Phyra79068;Parent=Phyra79068;rank=1 scaffold_36 . exon 402544 402709 . - . ID=Phyra79068.1;Parent=Phyra79068;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 ensembl protein_coding_gene 404435 405400 . + . ID=Phyra79069;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000112;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 404435 405400 . + . ID=Phyra79069;Parent=Phyra79069;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 404435 405400 . + 0 ID=Phyra79069;Parent=Phyra79069;rank=1 scaffold_36 . exon 404435 405400 . + . ID=Phyra79069.1;Parent=Phyra79069;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 406168 407148 . + . ID=Phyra79070;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000113;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 406168 407148 . + . ID=Phyra79070;Parent=Phyra79070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 406168 407148 . + 0 ID=Phyra79070;Parent=Phyra79070;rank=1 scaffold_36 . exon 406168 407148 . + . ID=Phyra79070.1;Parent=Phyra79070;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 407598 408584 . + . ID=Phyra79071;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000114;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 407598 408584 . + . ID=Phyra79071;Parent=Phyra79071;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 407598 408584 . + 0 ID=Phyra79071;Parent=Phyra79071;rank=1 scaffold_36 . exon 407598 408584 . + . ID=Phyra79071.1;Parent=Phyra79071;constitutive=1;rank=1 scaffold_36 . repeat_region 415626 415696 . ? . description=trf scaffold_36 . repeat_region 415635 415696 . ? . description=trf scaffold_36 . repeat_region 415947 416033 . ? . description=trf scaffold_36 . repeat_region 415956 416033 . ? . description=trf scaffold_36 . repeat_region 416495 416523 . ? . description=trf scaffold_36 ensembl protein_coding_gene 408717 410813 . - . ID=Phyra79072;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000115;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 408717 410813 . - . ID=Phyra79072;Parent=Phyra79072;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 408717 410813 . - 0 ID=Phyra79072;Parent=Phyra79072;rank=1 scaffold_36 . exon 408717 410813 . - . ID=Phyra79072.1;Parent=Phyra79072;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 411106 413056 . - . ID=Phyra79073;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000116;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 411106 413056 . - . ID=Phyra79073;Parent=Phyra79073;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 411106 412469 . - 0 ID=Phyra79073;Parent=Phyra79073;rank=3 scaffold_36 . exon 411106 412469 . - . ID=Phyra79073.3;Parent=Phyra79073;constitutive=1;ensembl_phase=1;rank=3 scaffold_36 . CDS 412540 412667 . - 0 ID=Phyra79073;Parent=Phyra79073;rank=2 scaffold_36 . exon 412540 412667 . - . ID=Phyra79073.2;Parent=Phyra79073;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 412761 413056 . - 0 ID=Phyra79073;Parent=Phyra79073;rank=1 scaffold_36 . exon 412761 413056 . - . ID=Phyra79073.1;Parent=Phyra79073;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 413553 414113 . - . ID=Phyra79074;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000117;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 413553 414113 . - . ID=Phyra79074;Parent=Phyra79074;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 413553 414113 . - 0 ID=Phyra79074;Parent=Phyra79074;rank=1 scaffold_36 . exon 413553 414113 . - . ID=Phyra79074.1;Parent=Phyra79074;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 415395 416531 . + . ID=Phyra79075;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000118;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 415395 416531 . + . ID=Phyra79075;Parent=Phyra79075;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 415395 416531 . + 0 ID=Phyra79075;Parent=Phyra79075;rank=1 scaffold_36 . exon 415395 416531 . + . ID=Phyra79075.1;Parent=Phyra79075;constitutive=1;rank=1 scaffold_36 . repeat_region 416772 425392 . ? . description=dust scaffold_36 . biological_region 426503 426506 0.999 - . logic_name=eponine scaffold_36 . biological_region 427630 427631 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 426378 428744 . - . ID=Phyra79076;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000119;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 426378 428744 . - . ID=Phyra79076;Parent=Phyra79076;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 426378 428744 . - 0 ID=Phyra79076;Parent=Phyra79076;rank=1 scaffold_36 . exon 426378 428744 . - . ID=Phyra79076.1;Parent=Phyra79076;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 430985 433351 . + . ID=Phyra79077;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000120;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 430985 433351 . + . ID=Phyra79077;Parent=Phyra79077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 430985 433351 . + 0 ID=Phyra79077;Parent=Phyra79077;rank=1 scaffold_36 . exon 430985 433351 . + . ID=Phyra79077.1;Parent=Phyra79077;constitutive=1;rank=1 scaffold_36 . repeat_region 438422 438434 . ? . description=dust scaffold_36 . biological_region 439175 439177 0.999 + . logic_name=eponine scaffold_36 . repeat_region 445347 445370 . ? . description=trf scaffold_36 . repeat_region 445347 445370 . ? . description=dust scaffold_36 . repeat_region 445431 445476 . ? . description=trf scaffold_36 . repeat_region 446292 446321 . ? . description=dust scaffold_36 . repeat_region 446293 446321 . ? . description=trf scaffold_36 . repeat_region 446783 446860 . ? . description=trf scaffold_36 . repeat_region 446802 446875 . ? . description=trf scaffold_36 . repeat_region 447120 447181 . ? . description=trf scaffold_36 . repeat_region 447120 447190 . ? . description=trf scaffold_36 ensembl protein_coding_gene 441691 444909 . - . ID=Phyra47977;biotype=protein_coding;external_name=gwEuk.36.68.1;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 441691 444909 . - . ID=Phyra47977;Parent=Phyra47977;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 441691 444690 . - 0 ID=Phyra47977;Parent=Phyra47977;rank=2 scaffold_36 . exon 441691 444690 . - . ID=Phyra47977.2;Parent=Phyra47977;constitutive=1;rank=2 scaffold_36 . CDS 444784 444909 . - 0 ID=Phyra47977;Parent=Phyra47977;rank=1 scaffold_36 . exon 444784 444909 . - . ID=Phyra47977.1;Parent=Phyra47977;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 446285 447421 . - . ID=Phyra79079;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_36000122;logic_name=jgi_phyra1 scaffold_36 ensembl transcript 446285 447421 . - . ID=Phyra79079;Parent=Phyra79079;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_36 . CDS 446285 447421 . - 0 ID=Phyra79079;Parent=Phyra79079;rank=1 scaffold_36 . exon 446285 447421 . - . ID=Phyra79079.1;Parent=Phyra79079;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_35 1 466101 scaffold_35 . biological_region 1977 1980 0.999 + . logic_name=eponine scaffold_35 . biological_region 2027 2029 0.999 - . logic_name=eponine scaffold_35 . biological_region 7238 7238 0.999 - . logic_name=eponine scaffold_35 ensembl protein_coding_gene 40 967 . - . ID=Phyra78806;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000001;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 40 967 . - . ID=Phyra78806;Parent=Phyra78806;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 40 292 . - 0 ID=Phyra78806;Parent=Phyra78806;rank=3 scaffold_35 . exon 40 292 . - . ID=Phyra78806.3;Parent=Phyra78806;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_35 . CDS 363 738 . - 0 ID=Phyra78806;Parent=Phyra78806;rank=2 scaffold_35 . exon 363 738 . - . ID=Phyra78806.2;Parent=Phyra78806;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_35 . CDS 821 967 . - 0 ID=Phyra78806;Parent=Phyra78806;rank=1 scaffold_35 . exon 821 967 . - . ID=Phyra78806.1;Parent=Phyra78806;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 1806 2675 . + . ID=Phyra78807;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000002;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 1806 2675 . + . ID=Phyra78807;Parent=Phyra78807;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 1806 2675 . + 0 ID=Phyra78807;Parent=Phyra78807;rank=1 scaffold_35 . exon 1806 2675 . + . ID=Phyra78807.1;Parent=Phyra78807;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 5146 6909 . - . ID=Phyra78808;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000003;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 5146 6909 . - . ID=Phyra78808;Parent=Phyra78808;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 5146 5367 . - 0 ID=Phyra78808;Parent=Phyra78808;rank=7 scaffold_35 . exon 5146 5367 . - . ID=Phyra78808.7;Parent=Phyra78808;constitutive=1;rank=7 scaffold_35 . CDS 5446 5895 . - 0 ID=Phyra78808;Parent=Phyra78808;rank=6 scaffold_35 . exon 5446 5895 . - . ID=Phyra78808.6;Parent=Phyra78808;constitutive=1;rank=6 scaffold_35 . CDS 5973 6359 . - 0 ID=Phyra78808;Parent=Phyra78808;rank=5 scaffold_35 . exon 5973 6359 . - . ID=Phyra78808.5;Parent=Phyra78808;constitutive=1;rank=5 scaffold_35 . CDS 6431 6535 . - 0 ID=Phyra78808;Parent=Phyra78808;rank=4 scaffold_35 . exon 6431 6535 . - . ID=Phyra78808.4;Parent=Phyra78808;constitutive=1;rank=4 scaffold_35 . CDS 6613 6665 . - 0 ID=Phyra78808;Parent=Phyra78808;rank=3 scaffold_35 . exon 6613 6665 . - . ID=Phyra78808.3;Parent=Phyra78808;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 6721 6754 . - 0 ID=Phyra78808;Parent=Phyra78808;rank=2 scaffold_35 . exon 6721 6754 . - . ID=Phyra78808.2;Parent=Phyra78808;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_35 . CDS 6829 6909 . - 0 ID=Phyra78808;Parent=Phyra78808;rank=1 scaffold_35 . exon 6829 6909 . - . ID=Phyra78808.1;Parent=Phyra78808;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 7009 7623 . + . ID=Phyra78809;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000004;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 7009 7623 . + . ID=Phyra78809;Parent=Phyra78809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 7009 7623 . + 0 ID=Phyra78809;Parent=Phyra78809;rank=1 scaffold_35 . exon 7009 7623 . + . ID=Phyra78809.1;Parent=Phyra78809;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 8321 9539 . - . ID=Phyra95219;biotype=protein_coding;external_name=C_scaffold_35000003;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 8321 9539 . - . ID=Phyra95219;Parent=Phyra95219;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 8321 8377 . - 0 ID=Phyra95219;Parent=Phyra95219;rank=4 scaffold_35 . exon 8321 8377 . - . ID=Phyra95219.4;Parent=Phyra95219;constitutive=1;rank=4 scaffold_35 . CDS 8409 8720 . - 0 ID=Phyra95219;Parent=Phyra95219;rank=3 scaffold_35 . exon 8409 8720 . - . ID=Phyra95219.3;Parent=Phyra95219;constitutive=1;rank=3 scaffold_35 . CDS 8838 9398 . - 0 ID=Phyra95219;Parent=Phyra95219;rank=2 scaffold_35 . exon 8838 9398 . - . ID=Phyra95219.2;Parent=Phyra95219;constitutive=1;rank=2 scaffold_35 . CDS 9513 9539 . - 0 ID=Phyra95219;Parent=Phyra95219;rank=1 scaffold_35 . exon 9513 9539 . - . ID=Phyra95219.1;Parent=Phyra95219;constitutive=1;rank=1 scaffold_35 . repeat_region 15519 15527 . ? . description=dust scaffold_35 ensembl protein_coding_gene 14365 15951 . - . ID=Phyra78812;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000007;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 14365 15951 . - . ID=Phyra78812;Parent=Phyra78812;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 14365 14568 . - 0 ID=Phyra78812;Parent=Phyra78812;rank=6 scaffold_35 . exon 14365 14568 . - . ID=Phyra78812.6;Parent=Phyra78812;constitutive=1;rank=6 scaffold_35 . CDS 14652 14714 . - 0 ID=Phyra78812;Parent=Phyra78812;rank=5 scaffold_35 . exon 14652 14714 . - . ID=Phyra78812.5;Parent=Phyra78812;constitutive=1;rank=5 scaffold_35 . CDS 14882 14962 . - 0 ID=Phyra78812;Parent=Phyra78812;rank=4 scaffold_35 . exon 14882 14962 . - . ID=Phyra78812.4;Parent=Phyra78812;constitutive=1;rank=4 scaffold_35 . CDS 15037 15117 . - 0 ID=Phyra78812;Parent=Phyra78812;rank=3 scaffold_35 . exon 15037 15117 . - . ID=Phyra78812.3;Parent=Phyra78812;constitutive=1;rank=3 scaffold_35 . CDS 15184 15213 . - 0 ID=Phyra78812;Parent=Phyra78812;rank=2 scaffold_35 . exon 15184 15213 . - . ID=Phyra78812.2;Parent=Phyra78812;constitutive=1;rank=2 scaffold_35 . CDS 15538 15951 . - 0 ID=Phyra78812;Parent=Phyra78812;rank=1 scaffold_35 . exon 15538 15951 . - . ID=Phyra78812.1;Parent=Phyra78812;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 17487 19277 . + . ID=Phyra78813;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000008;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 17487 19277 . + . ID=Phyra78813;Parent=Phyra78813;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 17487 19277 . + 0 ID=Phyra78813;Parent=Phyra78813;rank=1 scaffold_35 . exon 17487 19277 . + . ID=Phyra78813.1;Parent=Phyra78813;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 19493 21130 . - . ID=Phyra78814;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000009;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 19493 21130 . - . ID=Phyra78814;Parent=Phyra78814;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 19493 21130 . - 0 ID=Phyra78814;Parent=Phyra78814;rank=1 scaffold_35 . exon 19493 21130 . - . ID=Phyra78814.1;Parent=Phyra78814;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 10493 11407 . + . ID=Phyra95220;biotype=protein_coding;external_name=C_scaffold_35000004;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 10493 11407 . + . ID=Phyra95220;Parent=Phyra95220;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 10493 10874 . + 0 ID=Phyra95220;Parent=Phyra95220;rank=1 scaffold_35 . exon 10493 10874 . + . ID=Phyra95220.1;Parent=Phyra95220;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 10972 11186 . + 0 ID=Phyra95220;Parent=Phyra95220;rank=2 scaffold_35 . exon 10972 11186 . + . ID=Phyra95220.2;Parent=Phyra95220;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 11267 11407 . + 0 ID=Phyra95220;Parent=Phyra95220;rank=3 scaffold_35 . exon 11267 11407 . + . ID=Phyra95220.3;Parent=Phyra95220;constitutive=1;rank=3 scaffold_35 . biological_region 29548 29549 0.999 + . logic_name=eponine scaffold_35 . biological_region 29597 29598 0.999 - . logic_name=eponine scaffold_35 . biological_region 29666 29666 0.999 - . logic_name=eponine scaffold_35 . biological_region 29686 29695 0.999 + . logic_name=eponine scaffold_35 . biological_region 29751 29759 0.999 - . logic_name=eponine scaffold_35 ensembl protein_coding_gene 21922 24681 . - . ID=Phyra78815;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000010;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 21922 24681 . - . ID=Phyra78815;Parent=Phyra78815;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 21922 24681 . - 0 ID=Phyra78815;Parent=Phyra78815;rank=1 scaffold_35 . exon 21922 24681 . - . ID=Phyra78815.1;Parent=Phyra78815;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 28383 29853 . - . ID=Phyra78816;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000011;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 28383 29853 . - . ID=Phyra78816;Parent=Phyra78816;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 28383 28390 . - 0 ID=Phyra78816;Parent=Phyra78816;rank=2 scaffold_35 . exon 28383 28390 . - . ID=Phyra78816.2;Parent=Phyra78816;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 28461 29853 . - 0 ID=Phyra78816;Parent=Phyra78816;rank=1 scaffold_35 . exon 28461 29853 . - . ID=Phyra78816.1;Parent=Phyra78816;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . repeat_region 39234 43812 . ? . description=dust scaffold_35 ensembl protein_coding_gene 37162 37566 . - . ID=Phyra78818;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000013;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 37162 37566 . - . ID=Phyra78818;Parent=Phyra78818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 37162 37566 . - 0 ID=Phyra78818;Parent=Phyra78818;rank=1 scaffold_35 . exon 37162 37566 . - . ID=Phyra78818.1;Parent=Phyra78818;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 38279 38881 . - . ID=Phyra78819;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000014;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 38279 38881 . - . ID=Phyra78819;Parent=Phyra78819;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 38279 38881 . - 0 ID=Phyra78819;Parent=Phyra78819;rank=1 scaffold_35 . exon 38279 38881 . - . ID=Phyra78819.1;Parent=Phyra78819;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 31058 34542 . + . ID=Phyra95221;biotype=protein_coding;external_name=C_scaffold_35000005;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 31058 34542 . + . ID=Phyra95221;Parent=Phyra95221;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 31058 32257 . + 0 ID=Phyra95221;Parent=Phyra95221;rank=1 scaffold_35 . exon 31058 32257 . + . ID=Phyra95221.1;Parent=Phyra95221;constitutive=1;rank=1 scaffold_35 . CDS 33083 33210 . + 0 ID=Phyra95221;Parent=Phyra95221;rank=2 scaffold_35 . exon 33083 33210 . + . ID=Phyra95221.2;Parent=Phyra95221;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_35 . CDS 33330 33502 . + 0 ID=Phyra95221;Parent=Phyra95221;rank=3 scaffold_35 . exon 33330 33502 . + . ID=Phyra95221.3;Parent=Phyra95221;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 33574 33971 . + 0 ID=Phyra95221;Parent=Phyra95221;rank=4 scaffold_35 . exon 33574 33971 . + . ID=Phyra95221.4;Parent=Phyra95221;constitutive=1;ensembl_phase=1;rank=4 scaffold_35 . CDS 34048 34542 . + 0 ID=Phyra95221;Parent=Phyra95221;rank=5 scaffold_35 . exon 34048 34542 . + . ID=Phyra95221.5;Parent=Phyra95221;constitutive=1;rank=5 scaffold_35 . biological_region 44322 44327 0.999 + . logic_name=eponine scaffold_35 . biological_region 45534 45534 0.999 - . logic_name=eponine scaffold_35 . biological_region 46865 46869 0.999 + . logic_name=eponine scaffold_35 . biological_region 47186 47189 0.999 - . logic_name=eponine scaffold_35 . biological_region 47345 47351 0.999 + . logic_name=eponine scaffold_35 . biological_region 48367 48368 0.999 + . logic_name=eponine scaffold_35 . biological_region 48660 48660 0.999 + . logic_name=eponine scaffold_35 ensembl protein_coding_gene 44698 45474 . + . ID=Phyra78820;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000015;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 44698 45474 . + . ID=Phyra78820;Parent=Phyra78820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 44698 45474 . + 0 ID=Phyra78820;Parent=Phyra78820;rank=1 scaffold_35 . exon 44698 45474 . + . ID=Phyra78820.1;Parent=Phyra78820;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 46964 47677 . - . ID=Phyra78821;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000016;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 46964 47677 . - . ID=Phyra78821;Parent=Phyra78821;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 46964 47677 . - 0 ID=Phyra78821;Parent=Phyra78821;rank=1 scaffold_35 . exon 46964 47677 . - . ID=Phyra78821.1;Parent=Phyra78821;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 48719 49495 . - . ID=Phyra78822;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000017;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 48719 49495 . - . ID=Phyra78822;Parent=Phyra78822;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 48719 49495 . - 0 ID=Phyra78822;Parent=Phyra78822;rank=1 scaffold_35 . exon 48719 49495 . - . ID=Phyra78822.1;Parent=Phyra78822;constitutive=1;rank=1 scaffold_35 . repeat_region 50163 50180 . ? . description=dust scaffold_35 . repeat_region 53755 53763 . ? . description=dust scaffold_35 . repeat_region 54039 54047 . ? . description=dust scaffold_35 . repeat_region 55746 55800 . ? . description=trf scaffold_35 ensembl protein_coding_gene 59058 59300 . - . ID=Phyra47832;biotype=protein_coding;external_name=gwEuk.35.129.1;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 59058 59300 . - . ID=Phyra47832;Parent=Phyra47832;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 59058 59300 . - 0 ID=Phyra47832;Parent=Phyra47832;rank=1 scaffold_35 . exon 59058 59300 . - . ID=Phyra47832.1;Parent=Phyra47832;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 56735 57790 . - . ID=Phyra47833;biotype=protein_coding;external_name=gwEuk.35.130.1;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 56735 57790 . - . ID=Phyra47833;Parent=Phyra47833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 56735 57790 . - 0 ID=Phyra47833;Parent=Phyra47833;rank=1 scaffold_35 . exon 56735 57790 . - . ID=Phyra47833.1;Parent=Phyra47833;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 50179 53305 . - . ID=Phyra78823;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000018;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 50179 53305 . - . ID=Phyra78823;Parent=Phyra78823;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 50179 51369 . - 0 ID=Phyra78823;Parent=Phyra78823;rank=3 scaffold_35 . exon 50179 51369 . - . ID=Phyra78823.3;Parent=Phyra78823;constitutive=1;rank=3 scaffold_35 . CDS 51589 52255 . - 0 ID=Phyra78823;Parent=Phyra78823;rank=2 scaffold_35 . exon 51589 52255 . - . ID=Phyra78823.2;Parent=Phyra78823;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 52659 53305 . - 0 ID=Phyra78823;Parent=Phyra78823;rank=1 scaffold_35 . exon 52659 53305 . - . ID=Phyra78823.1;Parent=Phyra78823;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 54101 56588 . + . ID=Phyra78824;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000019;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 54101 56588 . + . ID=Phyra78824;Parent=Phyra78824;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 54101 54149 . + 0 ID=Phyra78824;Parent=Phyra78824;rank=1 scaffold_35 . exon 54101 54149 . + . ID=Phyra78824.1;Parent=Phyra78824;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 54454 54911 . + 0 ID=Phyra78824;Parent=Phyra78824;rank=2 scaffold_35 . exon 54454 54911 . + . ID=Phyra78824.2;Parent=Phyra78824;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 54986 56560 . + 0 ID=Phyra78824;Parent=Phyra78824;rank=3 scaffold_35 . exon 54986 56560 . + . ID=Phyra78824.3;Parent=Phyra78824;constitutive=1;rank=3 scaffold_35 . CDS 56586 56588 . + 0 ID=Phyra78824;Parent=Phyra78824;rank=4 scaffold_35 . exon 56586 56588 . + . ID=Phyra78824.4;Parent=Phyra78824;constitutive=1;rank=4 scaffold_35 . biological_region 63524 63530 0.999 - . logic_name=eponine scaffold_35 . biological_region 63819 63820 0.999 - . logic_name=eponine scaffold_35 . biological_region 65181 65183 0.999 + . logic_name=eponine scaffold_35 . biological_region 65276 65278 0.999 - . logic_name=eponine scaffold_35 ensembl protein_coding_gene 60584 60835 . - . ID=Phyra47831;biotype=protein_coding;external_name=gwEuk.35.128.1;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 60584 60835 . - . ID=Phyra47831;Parent=Phyra47831;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 60584 60835 . - 0 ID=Phyra47831;Parent=Phyra47831;rank=1 scaffold_35 . exon 60584 60835 . - . ID=Phyra47831.1;Parent=Phyra47831;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 65484 66737 . - . ID=Phyra71654;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_35000001;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 65484 66737 . - . ID=Phyra71654;Parent=Phyra71654;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 65484 66737 . - 0 ID=Phyra71654;Parent=Phyra71654;rank=1 scaffold_35 . exon 65484 66737 . - . ID=Phyra71654.1;Parent=Phyra71654;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 62372 63073 . + . ID=Phyra78826;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000021;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 62372 63073 . + . ID=Phyra78826;Parent=Phyra78826;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 62372 63073 . + 0 ID=Phyra78826;Parent=Phyra78826;rank=1 scaffold_35 . exon 62372 63073 . + . ID=Phyra78826.1;Parent=Phyra78826;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 63404 65368 . + . ID=Phyra78827;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000022;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 63404 65368 . + . ID=Phyra78827;Parent=Phyra78827;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 63404 65368 . + 0 ID=Phyra78827;Parent=Phyra78827;rank=1 scaffold_35 . exon 63404 65368 . + . ID=Phyra78827.1;Parent=Phyra78827;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 68183 70225 . - . ID=Phyra78829;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000024;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 68183 70225 . - . ID=Phyra78829;Parent=Phyra78829;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 68183 70225 . - 0 ID=Phyra78829;Parent=Phyra78829;rank=1 scaffold_35 . exon 68183 70225 . - . ID=Phyra78829.1;Parent=Phyra78829;constitutive=1;rank=1 scaffold_35 . repeat_region 71259 71269 . ? . description=dust scaffold_35 ensembl protein_coding_gene 71291 72032 . + . ID=Phyra78830;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000025;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 71291 72032 . + . ID=Phyra78830;Parent=Phyra78830;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 71291 71545 . + 0 ID=Phyra78830;Parent=Phyra78830;rank=1 scaffold_35 . exon 71291 71545 . + . ID=Phyra78830.1;Parent=Phyra78830;constitutive=1;rank=1 scaffold_35 . CDS 71619 72032 . + 0 ID=Phyra78830;Parent=Phyra78830;rank=2 scaffold_35 . exon 71619 72032 . + . ID=Phyra78830.2;Parent=Phyra78830;constitutive=1;rank=2 scaffold_35 ensembl protein_coding_gene 74084 74848 . + . ID=Phyra78831;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000026;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 74084 74848 . + . ID=Phyra78831;Parent=Phyra78831;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 74084 74848 . + 0 ID=Phyra78831;Parent=Phyra78831;rank=1 scaffold_35 . exon 74084 74848 . + . ID=Phyra78831.1;Parent=Phyra78831;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 75184 77316 . - . ID=Phyra78832;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000027;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 75184 77316 . - . ID=Phyra78832;Parent=Phyra78832;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 75184 77316 . - 0 ID=Phyra78832;Parent=Phyra78832;rank=1 scaffold_35 . exon 75184 77316 . - . ID=Phyra78832.1;Parent=Phyra78832;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 78234 78896 . + . ID=Phyra78833;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000028;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 78234 78896 . + . ID=Phyra78833;Parent=Phyra78833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 78234 78896 . + 0 ID=Phyra78833;Parent=Phyra78833;rank=1 scaffold_35 . exon 78234 78896 . + . ID=Phyra78833.1;Parent=Phyra78833;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 79051 80535 . - . ID=Phyra78834;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000029;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 79051 80535 . - . ID=Phyra78834;Parent=Phyra78834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 79051 80535 . - 0 ID=Phyra78834;Parent=Phyra78834;rank=1 scaffold_35 . exon 79051 80535 . - . ID=Phyra78834.1;Parent=Phyra78834;constitutive=1;rank=1 scaffold_35 . biological_region 80705 80710 0.999 + . logic_name=eponine scaffold_35 . biological_region 80746 80752 0.999 - . logic_name=eponine scaffold_35 . biological_region 84001 84002 0.999 - . logic_name=eponine scaffold_35 . biological_region 84323 84325 0.999 + . logic_name=eponine scaffold_35 . biological_region 87388 87391 0.999 - . logic_name=eponine scaffold_35 . biological_region 87712 87713 0.999 + . logic_name=eponine scaffold_35 ensembl protein_coding_gene 83495 84964 . - . ID=Phyra78835;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000030;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 83495 84964 . - . ID=Phyra78835;Parent=Phyra78835;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 83495 84964 . - 0 ID=Phyra78835;Parent=Phyra78835;rank=1 scaffold_35 . exon 83495 84964 . - . ID=Phyra78835.1;Parent=Phyra78835;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 86749 88218 . + . ID=Phyra78836;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000031;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 86749 88218 . + . ID=Phyra78836;Parent=Phyra78836;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 86749 88218 . + 0 ID=Phyra78836;Parent=Phyra78836;rank=1 scaffold_35 . exon 86749 88218 . + . ID=Phyra78836.1;Parent=Phyra78836;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 88707 89555 . - . ID=Phyra78837;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000032;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 88707 89555 . - . ID=Phyra78837;Parent=Phyra78837;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 88707 89555 . - 0 ID=Phyra78837;Parent=Phyra78837;rank=1 scaffold_35 . exon 88707 89555 . - . ID=Phyra78837.1;Parent=Phyra78837;constitutive=1;rank=1 scaffold_35 . repeat_region 93428 93435 . ? . description=dust scaffold_35 . repeat_region 98603 98626 . ? . description=trf scaffold_35 . repeat_region 98651 98702 . ? . description=trf scaffold_35 ensembl protein_coding_gene 90007 90714 . - . ID=Phyra78838;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000033;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 90007 90714 . - . ID=Phyra78838;Parent=Phyra78838;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 90007 90714 . - 0 ID=Phyra78838;Parent=Phyra78838;rank=1 scaffold_35 . exon 90007 90714 . - . ID=Phyra78838.1;Parent=Phyra78838;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 92620 93315 . + . ID=Phyra78839;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000034;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 92620 93315 . + . ID=Phyra78839;Parent=Phyra78839;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 92620 93315 . + 0 ID=Phyra78839;Parent=Phyra78839;rank=1 scaffold_35 . exon 92620 93315 . + . ID=Phyra78839.1;Parent=Phyra78839;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 93570 94151 . - . ID=Phyra78840;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000035;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 93570 94151 . - . ID=Phyra78840;Parent=Phyra78840;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 93570 94151 . - 0 ID=Phyra78840;Parent=Phyra78840;rank=1 scaffold_35 . exon 93570 94151 . - . ID=Phyra78840.1;Parent=Phyra78840;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 94827 97439 . - . ID=Phyra78841;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000036;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 94827 97439 . - . ID=Phyra78841;Parent=Phyra78841;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 94827 97439 . - 0 ID=Phyra78841;Parent=Phyra78841;rank=1 scaffold_35 . exon 94827 97439 . - . ID=Phyra78841.1;Parent=Phyra78841;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 98291 102965 . - . ID=Phyra78842;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000037;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 98291 102965 . - . ID=Phyra78842;Parent=Phyra78842;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 98291 98552 . - 0 ID=Phyra78842;Parent=Phyra78842;rank=3 scaffold_35 . exon 98291 98552 . - . ID=Phyra78842.3;Parent=Phyra78842;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 98644 100386 . - 0 ID=Phyra78842;Parent=Phyra78842;rank=2 scaffold_35 . exon 98644 100386 . - . ID=Phyra78842.2;Parent=Phyra78842;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_35 . CDS 100582 102965 . - 0 ID=Phyra78842;Parent=Phyra78842;rank=1 scaffold_35 . biological_region 102851 102856 0.999 + . logic_name=eponine scaffold_35 . biological_region 105907 105909 0.999 + . logic_name=eponine scaffold_35 . exon 100582 102965 . - . ID=Phyra78842.1;Parent=Phyra78842;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 105012 110204 . + . ID=Phyra78843;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000038;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 105012 110204 . + . ID=Phyra78843;Parent=Phyra78843;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 105012 110204 . + 0 ID=Phyra78843;Parent=Phyra78843;rank=1 scaffold_35 . exon 105012 110204 . + . ID=Phyra78843.1;Parent=Phyra78843;constitutive=1;rank=1 scaffold_35 . repeat_region 117308 117329 . ? . description=trf scaffold_35 ensembl protein_coding_gene 110667 111742 . - . ID=Phyra78844;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000039;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 110667 111742 . - . ID=Phyra78844;Parent=Phyra78844;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 110667 110699 . - 0 ID=Phyra78844;Parent=Phyra78844;rank=3 scaffold_35 . exon 110667 110699 . - . ID=Phyra78844.3;Parent=Phyra78844;constitutive=1;rank=3 scaffold_35 . CDS 110788 111320 . - 0 ID=Phyra78844;Parent=Phyra78844;rank=2 scaffold_35 . exon 110788 111320 . - . ID=Phyra78844.2;Parent=Phyra78844;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 111388 111742 . - 0 ID=Phyra78844;Parent=Phyra78844;rank=1 scaffold_35 . exon 111388 111742 . - . ID=Phyra78844.1;Parent=Phyra78844;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 112072 114078 . - . ID=Phyra78845;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000040;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 112072 114078 . - . ID=Phyra78845;Parent=Phyra78845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 112072 114078 . - 0 ID=Phyra78845;Parent=Phyra78845;rank=1 scaffold_35 . exon 112072 114078 . - . ID=Phyra78845.1;Parent=Phyra78845;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 117256 117960 . + . ID=Phyra78846;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000041;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 117256 117960 . + . ID=Phyra78846;Parent=Phyra78846;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 117256 117960 . + 0 ID=Phyra78846;Parent=Phyra78846;rank=1 scaffold_35 . exon 117256 117960 . + . ID=Phyra78846.1;Parent=Phyra78846;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 118072 119957 . - . ID=Phyra78847;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000042;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 118072 119957 . - . ID=Phyra78847;Parent=Phyra78847;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 118072 118257 . - 0 ID=Phyra78847;Parent=Phyra78847;rank=4 scaffold_35 . exon 118072 118257 . - . ID=Phyra78847.4;Parent=Phyra78847;constitutive=1;rank=4 scaffold_35 . CDS 118389 118685 . - 0 ID=Phyra78847;Parent=Phyra78847;rank=3 scaffold_35 . exon 118389 118685 . - . ID=Phyra78847.3;Parent=Phyra78847;constitutive=1;rank=3 scaffold_35 . CDS 118759 119139 . - 0 ID=Phyra78847;Parent=Phyra78847;rank=2 scaffold_35 . exon 118759 119139 . - . ID=Phyra78847.2;Parent=Phyra78847;constitutive=1;rank=2 scaffold_35 . CDS 119331 119957 . - 0 ID=Phyra78847;Parent=Phyra78847;rank=1 scaffold_35 . biological_region 119688 119691 0.999 + . logic_name=eponine scaffold_35 . biological_region 119773 119776 0.999 + . logic_name=eponine scaffold_35 . biological_region 119818 119824 0.999 - . logic_name=eponine scaffold_35 . biological_region 119845 119845 0.999 - . logic_name=eponine scaffold_35 . biological_region 119874 119875 0.999 + . logic_name=eponine scaffold_35 . biological_region 120085 120085 0.999 + . logic_name=eponine scaffold_35 . biological_region 121418 121419 0.999 + . logic_name=eponine scaffold_35 . biological_region 121627 121628 0.999 + . logic_name=eponine scaffold_35 . biological_region 124773 124777 0.999 + . logic_name=eponine scaffold_35 . biological_region 124937 124939 0.999 - . logic_name=eponine scaffold_35 . biological_region 125335 125339 0.999 - . logic_name=eponine scaffold_35 . biological_region 125738 125744 0.999 + . logic_name=eponine scaffold_35 . biological_region 127769 127769 0.999 - . logic_name=eponine scaffold_35 . exon 119331 119957 . - . ID=Phyra78847.1;Parent=Phyra78847;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 121415 122119 . + . ID=Phyra78848;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000043;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 121415 122119 . + . ID=Phyra78848;Parent=Phyra78848;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 121415 122119 . + 0 ID=Phyra78848;Parent=Phyra78848;rank=1 scaffold_35 . exon 121415 122119 . + . ID=Phyra78848.1;Parent=Phyra78848;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 122668 123261 . - . ID=Phyra78849;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000044;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 122668 123261 . - . ID=Phyra78849;Parent=Phyra78849;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 122668 123261 . - 0 ID=Phyra78849;Parent=Phyra78849;rank=1 scaffold_35 . exon 122668 123261 . - . ID=Phyra78849.1;Parent=Phyra78849;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 125224 125715 . + . ID=Phyra78850;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000045;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 125224 125715 . + . ID=Phyra78850;Parent=Phyra78850;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 125224 125715 . + 0 ID=Phyra78850;Parent=Phyra78850;rank=1 scaffold_35 . exon 125224 125715 . + . ID=Phyra78850.1;Parent=Phyra78850;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 128366 128992 . - . ID=Phyra78851;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000046;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 128366 128992 . - . ID=Phyra78851;Parent=Phyra78851;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 128366 128992 . - 0 ID=Phyra78851;Parent=Phyra78851;rank=1 scaffold_35 . exon 128366 128992 . - . ID=Phyra78851.1;Parent=Phyra78851;constitutive=1;rank=1 scaffold_35 . repeat_region 129893 129942 . ? . description=dust scaffold_35 . repeat_region 132680 132755 . ? . description=dust scaffold_35 . repeat_region 134888 135524 . ? . description=dust scaffold_35 ensembl protein_coding_gene 130282 132289 . - . ID=Phyra78852;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000047;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 130282 132289 . - . ID=Phyra78852;Parent=Phyra78852;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 130282 130932 . - 0 ID=Phyra78852;Parent=Phyra78852;rank=3 scaffold_35 . exon 130282 130932 . - . ID=Phyra78852.3;Parent=Phyra78852;constitutive=1;rank=3 scaffold_35 . CDS 131459 131504 . - 0 ID=Phyra78852;Parent=Phyra78852;rank=2 scaffold_35 . exon 131459 131504 . - . ID=Phyra78852.2;Parent=Phyra78852;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 131787 132289 . - 0 ID=Phyra78852;Parent=Phyra78852;rank=1 scaffold_35 . exon 131787 132289 . - . ID=Phyra78852.1;Parent=Phyra78852;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 133433 134005 . - . ID=Phyra78853;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000048;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 133433 134005 . - . ID=Phyra78853;Parent=Phyra78853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 133433 134005 . - 0 ID=Phyra78853;Parent=Phyra78853;rank=1 scaffold_35 . exon 133433 134005 . - . ID=Phyra78853.1;Parent=Phyra78853;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 134347 135925 . + . ID=Phyra78854;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000049;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 134347 135925 . + . ID=Phyra78854;Parent=Phyra78854;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 134347 134402 . + 0 ID=Phyra78854;Parent=Phyra78854;rank=1 scaffold_35 . exon 134347 134402 . + . ID=Phyra78854.1;Parent=Phyra78854;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 135538 135925 . + 0 ID=Phyra78854;Parent=Phyra78854;rank=2 scaffold_35 . exon 135538 135925 . + . ID=Phyra78854.2;Parent=Phyra78854;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 ensembl protein_coding_gene 137533 138114 . - . ID=Phyra78855;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000050;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 137533 138114 . - . ID=Phyra78855;Parent=Phyra78855;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 137533 138114 . - 0 ID=Phyra78855;Parent=Phyra78855;rank=1 scaffold_35 . exon 137533 138114 . - . ID=Phyra78855.1;Parent=Phyra78855;constitutive=1;rank=1 scaffold_35 . biological_region 147054 147055 0.999 - . logic_name=eponine scaffold_35 . biological_region 147534 147537 0.999 + . logic_name=eponine scaffold_35 . biological_region 148168 148172 0.999 + . logic_name=eponine scaffold_35 . biological_region 148171 148175 0.999 - . logic_name=eponine scaffold_35 . biological_region 148292 148300 0.999 - . logic_name=eponine scaffold_35 ensembl protein_coding_gene 147434 149395 . + . ID=Phyra71655;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_35000002;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 147434 149395 . + . ID=Phyra71655;Parent=Phyra71655;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 147434 149395 . + 0 ID=Phyra71655;Parent=Phyra71655;rank=1 scaffold_35 . exon 147434 149395 . + . ID=Phyra71655.1;Parent=Phyra71655;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 139714 143189 . + . ID=Phyra78856;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000051;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 139714 143189 . + . ID=Phyra78856;Parent=Phyra78856;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 139714 139864 . + 0 ID=Phyra78856;Parent=Phyra78856;rank=1 scaffold_35 . exon 139714 139864 . + . ID=Phyra78856.1;Parent=Phyra78856;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 139926 140053 . + 0 ID=Phyra78856;Parent=Phyra78856;rank=2 scaffold_35 . exon 139926 140053 . + . ID=Phyra78856.2;Parent=Phyra78856;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 140132 140272 . + 0 ID=Phyra78856;Parent=Phyra78856;rank=3 scaffold_35 . exon 140132 140272 . + . ID=Phyra78856.3;Parent=Phyra78856;constitutive=1;rank=3 scaffold_35 . CDS 140514 140630 . + 0 ID=Phyra78856;Parent=Phyra78856;rank=4 scaffold_35 . exon 140514 140630 . + . ID=Phyra78856.4;Parent=Phyra78856;constitutive=1;rank=4 scaffold_35 . CDS 140715 140893 . + 0 ID=Phyra78856;Parent=Phyra78856;rank=5 scaffold_35 . exon 140715 140893 . + . ID=Phyra78856.5;Parent=Phyra78856;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_35 . CDS 140936 141101 . + 0 ID=Phyra78856;Parent=Phyra78856;rank=6 scaffold_35 . exon 140936 141101 . + . ID=Phyra78856.6;Parent=Phyra78856;constitutive=1;ensembl_phase=2;rank=6 scaffold_35 . CDS 141180 141638 . + 0 ID=Phyra78856;Parent=Phyra78856;rank=7 scaffold_35 . exon 141180 141638 . + . ID=Phyra78856.7;Parent=Phyra78856;constitutive=1;rank=7 scaffold_35 . CDS 141923 141984 . + 0 ID=Phyra78856;Parent=Phyra78856;rank=8 scaffold_35 . exon 141923 141984 . + . ID=Phyra78856.8;Parent=Phyra78856;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_35 . CDS 142057 142087 . + 0 ID=Phyra78856;Parent=Phyra78856;rank=9 scaffold_35 . exon 142057 142087 . + . ID=Phyra78856.9;Parent=Phyra78856;constitutive=1;ensembl_phase=2;rank=9 scaffold_35 . CDS 142255 142365 . + 0 ID=Phyra78856;Parent=Phyra78856;rank=10 scaffold_35 . exon 142255 142365 . + . ID=Phyra78856.10;Parent=Phyra78856;constitutive=1;rank=10 scaffold_35 . CDS 142408 142503 . + 0 ID=Phyra78856;Parent=Phyra78856;rank=11 scaffold_35 . exon 142408 142503 . + . ID=Phyra78856.11;Parent=Phyra78856;constitutive=1;rank=11 scaffold_35 . CDS 142564 142961 . + 0 ID=Phyra78856;Parent=Phyra78856;rank=12 scaffold_35 . exon 142564 142961 . + . ID=Phyra78856.12;Parent=Phyra78856;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_35 . CDS 143033 143189 . + 0 ID=Phyra78856;Parent=Phyra78856;rank=13 scaffold_35 . exon 143033 143189 . + . ID=Phyra78856.13;Parent=Phyra78856;constitutive=1;ensembl_phase=2;rank=13 scaffold_35 ensembl protein_coding_gene 143380 147138 . - . ID=Phyra78857;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000052;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 143380 147138 . - . ID=Phyra78857;Parent=Phyra78857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 143380 147138 . - 0 ID=Phyra78857;Parent=Phyra78857;rank=1 scaffold_35 . exon 143380 147138 . - . ID=Phyra78857.1;Parent=Phyra78857;constitutive=1;rank=1 scaffold_35 . repeat_region 149778 149948 . ? . description=dust scaffold_35 . repeat_region 152333 152463 . ? . description=dust scaffold_35 . repeat_region 152651 152682 . ? . description=trf scaffold_35 . repeat_region 153729 159023 . ? . description=dust scaffold_35 ensembl protein_coding_gene 150917 152057 . - . ID=Phyra47858;biotype=protein_coding;external_name=gwEuk.35.155.1;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 150917 152057 . - . ID=Phyra47858;Parent=Phyra47858;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 150917 150990 . - 0 ID=Phyra47858;Parent=Phyra47858;rank=8 scaffold_35 . exon 150917 150990 . - . ID=Phyra47858.8;Parent=Phyra47858;constitutive=1;ensembl_phase=1;rank=8 scaffold_35 . CDS 151068 151159 . - 0 ID=Phyra47858;Parent=Phyra47858;rank=7 scaffold_35 . exon 151068 151159 . - . ID=Phyra47858.7;Parent=Phyra47858;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_35 . CDS 151226 151332 . - 0 ID=Phyra47858;Parent=Phyra47858;rank=6 scaffold_35 . exon 151226 151332 . - . ID=Phyra47858.6;Parent=Phyra47858;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_35 . CDS 151406 151504 . - 0 ID=Phyra47858;Parent=Phyra47858;rank=5 scaffold_35 . exon 151406 151504 . - . ID=Phyra47858.5;Parent=Phyra47858;constitutive=1;rank=5 scaffold_35 . CDS 151573 151644 . - 0 ID=Phyra47858;Parent=Phyra47858;rank=4 scaffold_35 . exon 151573 151644 . - . ID=Phyra47858.4;Parent=Phyra47858;constitutive=1;rank=4 scaffold_35 . CDS 151705 151749 . - 0 ID=Phyra47858;Parent=Phyra47858;rank=3 scaffold_35 . exon 151705 151749 . - . ID=Phyra47858.3;Parent=Phyra47858;constitutive=1;rank=3 scaffold_35 . CDS 151811 151914 . - 0 ID=Phyra47858;Parent=Phyra47858;rank=2 scaffold_35 . exon 151811 151914 . - . ID=Phyra47858.2;Parent=Phyra47858;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 151985 152057 . - 0 ID=Phyra47858;Parent=Phyra47858;rank=1 scaffold_35 . exon 151985 152057 . - . ID=Phyra47858.1;Parent=Phyra47858;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 152587 153729 . - . ID=Phyra47865;biotype=protein_coding;external_name=gwEuk.35.162.1;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 152587 153729 . - . ID=Phyra47865;Parent=Phyra47865;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 152587 153729 . - 0 ID=Phyra47865;Parent=Phyra47865;rank=1 scaffold_35 . exon 152587 153729 . - . ID=Phyra47865.1;Parent=Phyra47865;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 149952 150665 . + . ID=Phyra78859;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000054;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 149952 150665 . + . ID=Phyra78859;Parent=Phyra78859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 149952 150665 . + 0 ID=Phyra78859;Parent=Phyra78859;rank=1 scaffold_35 . exon 149952 150665 . + . ID=Phyra78859.1;Parent=Phyra78859;constitutive=1;rank=1 scaffold_35 . biological_region 159108 159115 0.999 - . logic_name=eponine scaffold_35 . biological_region 159135 159140 0.999 - . logic_name=eponine scaffold_35 . biological_region 161621 161627 0.999 + . logic_name=eponine scaffold_35 . biological_region 161641 161643 0.999 + . logic_name=eponine scaffold_35 . biological_region 161674 161675 0.999 - . logic_name=eponine scaffold_35 . biological_region 161792 161792 0.999 + . logic_name=eponine scaffold_35 . biological_region 161815 161816 0.999 + . logic_name=eponine scaffold_35 . biological_region 161832 161844 0.999 + . logic_name=eponine scaffold_35 . biological_region 161859 161867 0.999 + . logic_name=eponine scaffold_35 . biological_region 161899 161902 0.999 - . logic_name=eponine scaffold_35 . biological_region 161912 161917 0.999 + . logic_name=eponine scaffold_35 . biological_region 161927 161929 0.999 - . logic_name=eponine scaffold_35 . biological_region 162283 162283 0.999 + . logic_name=eponine scaffold_35 . biological_region 162319 162319 0.999 + . logic_name=eponine scaffold_35 . biological_region 162332 162333 0.999 - . logic_name=eponine scaffold_35 . biological_region 164416 164416 0.999 + . logic_name=eponine scaffold_35 . biological_region 167067 167070 0.999 - . logic_name=eponine scaffold_35 . biological_region 168525 168525 0.999 - . logic_name=eponine scaffold_35 ensembl protein_coding_gene 159025 160212 . + . ID=Phyra47873;biotype=protein_coding;external_name=gwEuk.35.170.1;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 159025 160212 . + . ID=Phyra47873;Parent=Phyra47873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 159025 160212 . + 0 ID=Phyra47873;Parent=Phyra47873;rank=1 scaffold_35 . exon 159025 160212 . + . ID=Phyra47873.1;Parent=Phyra47873;constitutive=1;rank=1 scaffold_35 ensembl pseudogene 164397 164756 . - . ID=Phyra47877;biotype=pseudogene;external_name=gwEuk.35.174.1;logic_name=jgi_phyra1 scaffold_35 ensembl pseudogene 164397 164756 . - . ID=Phyra47877;Parent=Phyra47877;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_35 . exon 164397 164756 . - . ID=Phyra47877.1;Parent=Phyra47877;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 160548 162050 . - . ID=Phyra78863;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000058;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 160548 162050 . - . ID=Phyra78863;Parent=Phyra78863;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 160548 162050 . - 0 ID=Phyra78863;Parent=Phyra78863;rank=1 scaffold_35 . exon 160548 162050 . - . ID=Phyra78863.1;Parent=Phyra78863;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 165827 167061 . - . ID=Phyra78865;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000060;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 165827 167061 . - . ID=Phyra78865;Parent=Phyra78865;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 165827 166009 . - 0 ID=Phyra78865;Parent=Phyra78865;rank=6 scaffold_35 . exon 165827 166009 . - . ID=Phyra78865.6;Parent=Phyra78865;constitutive=1;rank=6 scaffold_35 . CDS 166079 166151 . - 0 ID=Phyra78865;Parent=Phyra78865;rank=5 scaffold_35 . exon 166079 166151 . - . ID=Phyra78865.5;Parent=Phyra78865;constitutive=1;ensembl_phase=2;rank=5 scaffold_35 . CDS 166429 166504 . - 0 ID=Phyra78865;Parent=Phyra78865;rank=4 scaffold_35 . exon 166429 166504 . - . ID=Phyra78865.4;Parent=Phyra78865;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_35 . CDS 166617 166640 . - 0 ID=Phyra78865;Parent=Phyra78865;rank=3 scaffold_35 . exon 166617 166640 . - . ID=Phyra78865.3;Parent=Phyra78865;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 166763 166862 . - 0 ID=Phyra78865;Parent=Phyra78865;rank=2 scaffold_35 . exon 166763 166862 . - . ID=Phyra78865.2;Parent=Phyra78865;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_35 . CDS 166981 167061 . - 0 ID=Phyra78865;Parent=Phyra78865;rank=1 scaffold_35 . exon 166981 167061 . - . ID=Phyra78865.1;Parent=Phyra78865;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 168434 169450 . + . ID=Phyra78866;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000061;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 168434 169450 . + . ID=Phyra78866;Parent=Phyra78866;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 168434 169450 . + 0 ID=Phyra78866;Parent=Phyra78866;rank=1 scaffold_35 . exon 168434 169450 . + . ID=Phyra78866.1;Parent=Phyra78866;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 170441 171457 . - . ID=Phyra78867;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000062;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 170441 171457 . - . ID=Phyra78867;Parent=Phyra78867;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 170441 171457 . - 0 ID=Phyra78867;Parent=Phyra78867;rank=1 scaffold_35 . exon 170441 171457 . - . ID=Phyra78867.1;Parent=Phyra78867;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 173232 175988 . + . ID=Phyra78868;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000063;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 173232 175988 . + . ID=Phyra78868;Parent=Phyra78868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 173232 175666 . + 0 ID=Phyra78868;Parent=Phyra78868;rank=1 scaffold_35 . exon 173232 175666 . + . ID=Phyra78868.1;Parent=Phyra78868;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 175706 175988 . + 0 ID=Phyra78868;Parent=Phyra78868;rank=2 scaffold_35 . exon 175706 175988 . + . ID=Phyra78868.2;Parent=Phyra78868;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 ensembl protein_coding_gene 176111 178683 . - . ID=Phyra78869;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000064;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 176111 178683 . - . ID=Phyra78869;Parent=Phyra78869;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 176111 176539 . - 0 ID=Phyra78869;Parent=Phyra78869;rank=4 scaffold_35 . exon 176111 176539 . - . ID=Phyra78869.4;Parent=Phyra78869;constitutive=1;rank=4 scaffold_35 . CDS 177059 178135 . - 0 ID=Phyra78869;Parent=Phyra78869;rank=3 scaffold_35 . exon 177059 178135 . - . ID=Phyra78869.3;Parent=Phyra78869;constitutive=1;rank=3 scaffold_35 . CDS 178199 178609 . - 0 ID=Phyra78869;Parent=Phyra78869;rank=2 scaffold_35 . exon 178199 178609 . - . ID=Phyra78869.2;Parent=Phyra78869;constitutive=1;rank=2 scaffold_35 . CDS 178642 178683 . - 0 ID=Phyra78869;Parent=Phyra78869;rank=1 scaffold_35 . biological_region 179532 179534 0.999 + . logic_name=eponine scaffold_35 . repeat_region 183138 183157 . ? . description=trf scaffold_35 . repeat_region 185656 185701 . ? . description=trf scaffold_35 . repeat_region 185656 185725 . ? . description=trf scaffold_35 . repeat_region 185657 185725 . ? . description=trf scaffold_35 . biological_region 186026 186030 0.999 + . logic_name=eponine scaffold_35 . biological_region 187319 187326 0.999 + . logic_name=eponine scaffold_35 . exon 178642 178683 . - . ID=Phyra78869.1;Parent=Phyra78869;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 180247 181899 . + . ID=Phyra78870;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000065;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 180247 181899 . + . ID=Phyra78870;Parent=Phyra78870;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 180247 181899 . + 0 ID=Phyra78870;Parent=Phyra78870;rank=1 scaffold_35 . exon 180247 181899 . + . ID=Phyra78870.1;Parent=Phyra78870;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 182955 183515 . + . ID=Phyra78871;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000066;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 182955 183515 . + . ID=Phyra78871;Parent=Phyra78871;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 182955 183515 . + 0 ID=Phyra78871;Parent=Phyra78871;rank=1 scaffold_35 . exon 182955 183515 . + . ID=Phyra78871.1;Parent=Phyra78871;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 183622 187071 . - . ID=Phyra78872;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000067;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 183622 187071 . - . ID=Phyra78872;Parent=Phyra78872;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 183622 187071 . - 0 ID=Phyra78872;Parent=Phyra78872;rank=1 scaffold_35 . exon 183622 187071 . - . ID=Phyra78872.1;Parent=Phyra78872;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 187296 188319 . + . ID=Phyra78873;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000068;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 187296 188319 . + . ID=Phyra78873;Parent=Phyra78873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 187296 187428 . + 0 ID=Phyra78873;Parent=Phyra78873;rank=1 scaffold_35 . exon 187296 187428 . + . ID=Phyra78873.1;Parent=Phyra78873;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 187494 187594 . + 0 ID=Phyra78873;Parent=Phyra78873;rank=2 scaffold_35 . exon 187494 187594 . + . ID=Phyra78873.2;Parent=Phyra78873;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 187653 187729 . + 0 ID=Phyra78873;Parent=Phyra78873;rank=3 scaffold_35 . exon 187653 187729 . + . ID=Phyra78873.3;Parent=Phyra78873;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_35 . CDS 187791 187866 . + 0 ID=Phyra78873;Parent=Phyra78873;rank=4 scaffold_35 . exon 187791 187866 . + . ID=Phyra78873.4;Parent=Phyra78873;constitutive=1;ensembl_phase=2;rank=4 scaffold_35 . CDS 187931 188005 . + 0 ID=Phyra78873;Parent=Phyra78873;rank=5 scaffold_35 . exon 187931 188005 . + . ID=Phyra78873.5;Parent=Phyra78873;constitutive=1;rank=5 scaffold_35 . CDS 188080 188169 . + 0 ID=Phyra78873;Parent=Phyra78873;rank=6 scaffold_35 . exon 188080 188169 . + . ID=Phyra78873.6;Parent=Phyra78873;constitutive=1;rank=6 scaffold_35 . CDS 188242 188319 . + 0 ID=Phyra78873;Parent=Phyra78873;rank=7 scaffold_35 . exon 188242 188319 . + . ID=Phyra78873.7;Parent=Phyra78873;constitutive=1;rank=7 scaffold_35 . repeat_region 191933 191940 . ? . description=dust scaffold_35 ensembl protein_coding_gene 189286 190833 . - . ID=Phyra78874;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000069;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 189286 190833 . - . ID=Phyra78874;Parent=Phyra78874;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 189286 190833 . - 0 ID=Phyra78874;Parent=Phyra78874;rank=1 scaffold_35 . exon 189286 190833 . - . ID=Phyra78874.1;Parent=Phyra78874;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 191167 191881 . + . ID=Phyra78875;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000070;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 191167 191881 . + . ID=Phyra78875;Parent=Phyra78875;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 191167 191612 . + 0 ID=Phyra78875;Parent=Phyra78875;rank=1 scaffold_35 . exon 191167 191612 . + . ID=Phyra78875.1;Parent=Phyra78875;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 191689 191881 . + 0 ID=Phyra78875;Parent=Phyra78875;rank=2 scaffold_35 . exon 191689 191881 . + . ID=Phyra78875.2;Parent=Phyra78875;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 ensembl protein_coding_gene 192059 193372 . + . ID=Phyra78876;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000071;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 192059 193372 . + . ID=Phyra78876;Parent=Phyra78876;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 192059 193372 . + 0 ID=Phyra78876;Parent=Phyra78876;rank=1 scaffold_35 . exon 192059 193372 . + . ID=Phyra78876.1;Parent=Phyra78876;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 193628 197950 . - . ID=Phyra78877;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000072;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 193628 197950 . - . ID=Phyra78877;Parent=Phyra78877;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 193628 197950 . - 0 ID=Phyra78877;Parent=Phyra78877;rank=1 scaffold_35 . exon 193628 197950 . - . ID=Phyra78877.1;Parent=Phyra78877;constitutive=1;rank=1 scaffold_35 . repeat_region 200495 200538 . ? . description=trf scaffold_35 . biological_region 201566 201567 0.999 + . logic_name=eponine scaffold_35 . biological_region 204843 204845 0.999 + . logic_name=eponine scaffold_35 . biological_region 205091 205100 0.999 - . logic_name=eponine scaffold_35 . biological_region 205178 205181 0.999 - . logic_name=eponine scaffold_35 . biological_region 205903 205906 0.999 - . logic_name=eponine scaffold_35 . biological_region 205930 205933 0.999 - . logic_name=eponine scaffold_35 ensembl protein_coding_gene 198372 199954 . + . ID=Phyra78878;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000073;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 198372 199954 . + . ID=Phyra78878;Parent=Phyra78878;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 198372 199731 . + 0 ID=Phyra78878;Parent=Phyra78878;rank=1 scaffold_35 . exon 198372 199731 . + . ID=Phyra78878.1;Parent=Phyra78878;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 199947 199954 . + 0 ID=Phyra78878;Parent=Phyra78878;rank=2 scaffold_35 . exon 199947 199954 . + . ID=Phyra78878.2;Parent=Phyra78878;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 ensembl protein_coding_gene 200120 200665 . - . ID=Phyra78879;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000074;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 200120 200665 . - . ID=Phyra78879;Parent=Phyra78879;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 200120 200665 . - 0 ID=Phyra78879;Parent=Phyra78879;rank=1 scaffold_35 . exon 200120 200665 . - . ID=Phyra78879.1;Parent=Phyra78879;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 203366 205159 . - . ID=Phyra78881;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000076;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 203366 205159 . - . ID=Phyra78881;Parent=Phyra78881;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 203366 205159 . - 0 ID=Phyra78881;Parent=Phyra78881;rank=1 scaffold_35 . exon 203366 205159 . - . ID=Phyra78881.1;Parent=Phyra78881;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 205823 207706 . + . ID=Phyra78882;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000077;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 205823 207706 . + . ID=Phyra78882;Parent=Phyra78882;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 205823 207706 . + 0 ID=Phyra78882;Parent=Phyra78882;rank=1 scaffold_35 . exon 205823 207706 . + . ID=Phyra78882.1;Parent=Phyra78882;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 201275 202878 . + . ID=Phyra95229;biotype=protein_coding;external_name=C_scaffold_35000013;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 201275 202878 . + . ID=Phyra95229;Parent=Phyra95229;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 201275 201336 . + 0 ID=Phyra95229;Parent=Phyra95229;rank=1 scaffold_35 . exon 201275 201336 . + . ID=Phyra95229.1;Parent=Phyra95229;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 201379 201433 . + 0 ID=Phyra95229;Parent=Phyra95229;rank=2 scaffold_35 . exon 201379 201433 . + . ID=Phyra95229.2;Parent=Phyra95229;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 201500 201688 . + 0 ID=Phyra95229;Parent=Phyra95229;rank=3 scaffold_35 . exon 201500 201688 . + . ID=Phyra95229.3;Parent=Phyra95229;constitutive=1;rank=3 scaffold_35 . CDS 201764 201999 . + 0 ID=Phyra95229;Parent=Phyra95229;rank=4 scaffold_35 . exon 201764 201999 . + . ID=Phyra95229.4;Parent=Phyra95229;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_35 . CDS 202077 202660 . + 0 ID=Phyra95229;Parent=Phyra95229;rank=5 scaffold_35 . exon 202077 202660 . + . ID=Phyra95229.5;Parent=Phyra95229;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_35 . CDS 202715 202780 . + 0 ID=Phyra95229;Parent=Phyra95229;rank=6 scaffold_35 . exon 202715 202780 . + . ID=Phyra95229.6;Parent=Phyra95229;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_35 . CDS 202853 202878 . + 0 ID=Phyra95229;Parent=Phyra95229;rank=7 scaffold_35 . exon 202853 202878 . + . ID=Phyra95229.7;Parent=Phyra95229;constitutive=1;ensembl_phase=1;rank=7 scaffold_35 . repeat_region 208834 208843 . ? . description=dust scaffold_35 . repeat_region 215944 216023 . ? . description=dust scaffold_35 ensembl protein_coding_gene 211338 217779 . + . ID=Phyra78883;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000078;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 211338 217779 . + . ID=Phyra78883;Parent=Phyra78883;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 211338 211787 . + 0 ID=Phyra78883;Parent=Phyra78883;rank=1 scaffold_35 . exon 211338 211787 . + . ID=Phyra78883.1;Parent=Phyra78883;constitutive=1;rank=1 scaffold_35 . CDS 211861 212004 . + 0 ID=Phyra78883;Parent=Phyra78883;rank=2 scaffold_35 . exon 211861 212004 . + . ID=Phyra78883.2;Parent=Phyra78883;constitutive=1;rank=2 scaffold_35 . CDS 212073 212402 . + 0 ID=Phyra78883;Parent=Phyra78883;rank=3 scaffold_35 . exon 212073 212402 . + . ID=Phyra78883.3;Parent=Phyra78883;constitutive=1;rank=3 scaffold_35 . CDS 212802 212928 . + 0 ID=Phyra78883;Parent=Phyra78883;rank=4 scaffold_35 . exon 212802 212928 . + . ID=Phyra78883.4;Parent=Phyra78883;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_35 . CDS 213061 214099 . + 0 ID=Phyra78883;Parent=Phyra78883;rank=5 scaffold_35 . exon 213061 214099 . + . ID=Phyra78883.5;Parent=Phyra78883;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_35 . CDS 214320 214587 . + 0 ID=Phyra78883;Parent=Phyra78883;rank=6 scaffold_35 . exon 214320 214587 . + . ID=Phyra78883.6;Parent=Phyra78883;constitutive=1;ensembl_phase=2;rank=6 scaffold_35 . CDS 214664 214801 . + 0 ID=Phyra78883;Parent=Phyra78883;rank=7 scaffold_35 . exon 214664 214801 . + . ID=Phyra78883.7;Parent=Phyra78883;constitutive=1;rank=7 scaffold_35 . CDS 214878 215867 . + 0 ID=Phyra78883;Parent=Phyra78883;rank=8 scaffold_35 . exon 214878 215867 . + . ID=Phyra78883.8;Parent=Phyra78883;constitutive=1;rank=8 scaffold_35 . CDS 215936 216011 . + 0 ID=Phyra78883;Parent=Phyra78883;rank=9 scaffold_35 . exon 215936 216011 . + . ID=Phyra78883.9;Parent=Phyra78883;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_35 . CDS 216266 217779 . + 0 ID=Phyra78883;Parent=Phyra78883;rank=10 scaffold_35 . exon 216266 217779 . + . ID=Phyra78883.10;Parent=Phyra78883;constitutive=1;ensembl_phase=1;rank=10 scaffold_35 . biological_region 223801 223806 0.999 - . logic_name=eponine scaffold_35 . biological_region 223821 223823 0.999 - . logic_name=eponine scaffold_35 . biological_region 227044 227044 0.999 + . logic_name=eponine scaffold_35 . biological_region 227055 227055 0.999 + . logic_name=eponine scaffold_35 . biological_region 227632 227635 0.999 + . logic_name=eponine scaffold_35 ensembl protein_coding_gene 225102 228061 . - . ID=Phyra78884;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000079;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 225102 228061 . - . ID=Phyra78884;Parent=Phyra78884;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 225102 225249 . - 0 ID=Phyra78884;Parent=Phyra78884;rank=3 scaffold_35 . exon 225102 225249 . - . ID=Phyra78884.3;Parent=Phyra78884;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 225307 225365 . - 0 ID=Phyra78884;Parent=Phyra78884;rank=2 scaffold_35 . exon 225307 225365 . - . ID=Phyra78884.2;Parent=Phyra78884;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_35 . CDS 225434 228061 . - 0 ID=Phyra78884;Parent=Phyra78884;rank=1 scaffold_35 . exon 225434 228061 . - . ID=Phyra78884.1;Parent=Phyra78884;constitutive=1;rank=1 scaffold_35 . repeat_region 235330 235376 . ? . description=dust scaffold_35 ensembl protein_coding_gene 234728 235640 . - . ID=Phyra47709;biotype=protein_coding;external_name=gwEuk.35.6.1;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 234728 235640 . - . ID=Phyra47709;Parent=Phyra47709;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 234728 234814 . - 0 ID=Phyra47709;Parent=Phyra47709;rank=5 scaffold_35 . exon 234728 234814 . - . ID=Phyra47709.5;Parent=Phyra47709;constitutive=1;rank=5 scaffold_35 . CDS 234891 234959 . - 0 ID=Phyra47709;Parent=Phyra47709;rank=4 scaffold_35 . exon 234891 234959 . - . ID=Phyra47709.4;Parent=Phyra47709;constitutive=1;rank=4 scaffold_35 . CDS 235025 235312 . - 0 ID=Phyra47709;Parent=Phyra47709;rank=3 scaffold_35 . exon 235025 235312 . - . ID=Phyra47709.3;Parent=Phyra47709;constitutive=1;rank=3 scaffold_35 . CDS 235385 235524 . - 0 ID=Phyra47709;Parent=Phyra47709;rank=2 scaffold_35 . exon 235385 235524 . - . ID=Phyra47709.2;Parent=Phyra47709;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 235595 235640 . - 0 ID=Phyra47709;Parent=Phyra47709;rank=1 scaffold_35 . exon 235595 235640 . - . ID=Phyra47709.1;Parent=Phyra47709;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 228191 232136 . + . ID=Phyra78885;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000080;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 228191 232136 . + . ID=Phyra78885;Parent=Phyra78885;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 228191 229840 . + 0 ID=Phyra78885;Parent=Phyra78885;rank=1 scaffold_35 . exon 228191 229840 . + . ID=Phyra78885.1;Parent=Phyra78885;constitutive=1;rank=1 scaffold_35 . CDS 229878 229893 . + 0 ID=Phyra78885;Parent=Phyra78885;rank=2 scaffold_35 . exon 229878 229893 . + . ID=Phyra78885.2;Parent=Phyra78885;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_35 . CDS 229977 230312 . + 0 ID=Phyra78885;Parent=Phyra78885;rank=3 scaffold_35 . exon 229977 230312 . + . ID=Phyra78885.3;Parent=Phyra78885;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 230796 231012 . + 0 ID=Phyra78885;Parent=Phyra78885;rank=4 scaffold_35 . exon 230796 231012 . + . ID=Phyra78885.4;Parent=Phyra78885;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_35 . CDS 231331 232012 . + 0 ID=Phyra78885;Parent=Phyra78885;rank=5 scaffold_35 . exon 231331 232012 . + . ID=Phyra78885.5;Parent=Phyra78885;constitutive=1;ensembl_phase=2;rank=5 scaffold_35 . CDS 232089 232136 . + 0 ID=Phyra78885;Parent=Phyra78885;rank=6 scaffold_35 . exon 232089 232136 . + . ID=Phyra78885.6;Parent=Phyra78885;constitutive=1;rank=6 scaffold_35 ensembl protein_coding_gene 236459 237154 . + . ID=Phyra78887;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000082;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 236459 237154 . + . ID=Phyra78887;Parent=Phyra78887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 236459 236584 . + 0 ID=Phyra78887;Parent=Phyra78887;rank=1 scaffold_35 . exon 236459 236584 . + . ID=Phyra78887.1;Parent=Phyra78887;constitutive=1;rank=1 scaffold_35 . CDS 236675 236851 . + 0 ID=Phyra78887;Parent=Phyra78887;rank=2 scaffold_35 . exon 236675 236851 . + . ID=Phyra78887.2;Parent=Phyra78887;constitutive=1;rank=2 scaffold_35 . CDS 236905 237015 . + 0 ID=Phyra78887;Parent=Phyra78887;rank=3 scaffold_35 . exon 236905 237015 . + . ID=Phyra78887.3;Parent=Phyra78887;constitutive=1;rank=3 scaffold_35 . CDS 237143 237154 . + 0 ID=Phyra78887;Parent=Phyra78887;rank=4 scaffold_35 . exon 237143 237154 . + . ID=Phyra78887.4;Parent=Phyra78887;constitutive=1;rank=4 scaffold_35 ensembl protein_coding_gene 232236 232562 . - . ID=Phyra95232;biotype=protein_coding;external_name=C_scaffold_35000016;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 232236 232562 . - . ID=Phyra95232;Parent=Phyra95232;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 232236 232401 . - 0 ID=Phyra95232;Parent=Phyra95232;rank=2 scaffold_35 . exon 232236 232401 . - . ID=Phyra95232.2;Parent=Phyra95232;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 232471 232562 . - 0 ID=Phyra95232;Parent=Phyra95232;rank=1 scaffold_35 . exon 232471 232562 . - . ID=Phyra95232.1;Parent=Phyra95232;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 232778 233554 . - . ID=Phyra95233;biotype=protein_coding;external_name=C_scaffold_35000017;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 232778 233554 . - . ID=Phyra95233;Parent=Phyra95233;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 232778 233194 . - 0 ID=Phyra95233;Parent=Phyra95233;rank=4 scaffold_35 . exon 232778 233194 . - . ID=Phyra95233.4;Parent=Phyra95233;constitutive=1;rank=4 scaffold_35 . CDS 233262 233301 . - 0 ID=Phyra95233;Parent=Phyra95233;rank=3 scaffold_35 . exon 233262 233301 . - . ID=Phyra95233.3;Parent=Phyra95233;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 233377 233446 . - 0 ID=Phyra95233;Parent=Phyra95233;rank=2 scaffold_35 . exon 233377 233446 . - . ID=Phyra95233.2;Parent=Phyra95233;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_35 . CDS 233518 233554 . - 0 ID=Phyra95233;Parent=Phyra95233;rank=1 scaffold_35 . exon 233518 233554 . - . ID=Phyra95233.1;Parent=Phyra95233;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . biological_region 244005 244006 0.999 + . logic_name=eponine scaffold_35 . biological_region 244220 244227 0.999 - . logic_name=eponine scaffold_35 . biological_region 244299 244304 0.999 - . logic_name=eponine scaffold_35 . repeat_region 245892 245928 . ? . description=trf scaffold_35 . repeat_region 247617 247658 . ? . description=trf scaffold_35 ensembl protein_coding_gene 241788 244505 . - . ID=Phyra78888;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000083;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 241788 244505 . - . ID=Phyra78888;Parent=Phyra78888;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 241788 244505 . - 0 ID=Phyra78888;Parent=Phyra78888;rank=1 scaffold_35 . exon 241788 244505 . - . ID=Phyra78888.1;Parent=Phyra78888;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 245106 248140 . + . ID=Phyra78889;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000084;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 245106 248140 . + . ID=Phyra78889;Parent=Phyra78889;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 245106 245188 . + 0 ID=Phyra78889;Parent=Phyra78889;rank=1 scaffold_35 . exon 245106 245188 . + . ID=Phyra78889.1;Parent=Phyra78889;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 245220 245503 . + 0 ID=Phyra78889;Parent=Phyra78889;rank=2 scaffold_35 . exon 245220 245503 . + . ID=Phyra78889.2;Parent=Phyra78889;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 245620 245792 . + 0 ID=Phyra78889;Parent=Phyra78889;rank=3 scaffold_35 . exon 245620 245792 . + . ID=Phyra78889.3;Parent=Phyra78889;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 246115 246384 . + 0 ID=Phyra78889;Parent=Phyra78889;rank=4 scaffold_35 . exon 246115 246384 . + . ID=Phyra78889.4;Parent=Phyra78889;constitutive=1;rank=4 scaffold_35 . CDS 246417 246720 . + 0 ID=Phyra78889;Parent=Phyra78889;rank=5 scaffold_35 . exon 246417 246720 . + . ID=Phyra78889.5;Parent=Phyra78889;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_35 . CDS 246936 247096 . + 0 ID=Phyra78889;Parent=Phyra78889;rank=6 scaffold_35 . exon 246936 247096 . + . ID=Phyra78889.6;Parent=Phyra78889;constitutive=1;ensembl_phase=1;rank=6 scaffold_35 . CDS 247250 247489 . + 0 ID=Phyra78889;Parent=Phyra78889;rank=7 scaffold_35 . exon 247250 247489 . + . ID=Phyra78889.7;Parent=Phyra78889;constitutive=1;rank=7 scaffold_35 . CDS 247517 248140 . + 0 ID=Phyra78889;Parent=Phyra78889;rank=8 scaffold_35 . exon 247517 248140 . + . ID=Phyra78889.8;Parent=Phyra78889;constitutive=1;rank=8 scaffold_35 ensembl protein_coding_gene 250062 253715 . + . ID=Phyra78890;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000085;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 250062 253715 . + . ID=Phyra78890;Parent=Phyra78890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 250062 253715 . + 0 ID=Phyra78890;Parent=Phyra78890;rank=1 scaffold_35 . exon 250062 253715 . + . ID=Phyra78890.1;Parent=Phyra78890;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 254082 256898 . + . ID=Phyra78891;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000086;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 254082 256898 . + . ID=Phyra78891;Parent=Phyra78891;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 254082 256898 . + 0 ID=Phyra78891;Parent=Phyra78891;rank=1 scaffold_35 . exon 254082 256898 . + . ID=Phyra78891.1;Parent=Phyra78891;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 257581 259246 . - . ID=Phyra95235;biotype=protein_coding;external_name=C_scaffold_35000019;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 257581 259246 . - . ID=Phyra95235;Parent=Phyra95235;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 257581 257587 . - 0 ID=Phyra95235;Parent=Phyra95235;rank=5 scaffold_35 . exon 257581 257587 . - . ID=Phyra95235.5;Parent=Phyra95235;constitutive=1;ensembl_phase=2;rank=5 scaffold_35 . CDS 257889 258043 . - 0 ID=Phyra95235;Parent=Phyra95235;rank=4 scaffold_35 . CDS 258116 258127 . - 0 ID=Phyra95235;Parent=Phyra95235;rank=3 scaffold_35 . CDS 258224 258815 . - 0 ID=Phyra95235;Parent=Phyra95235;rank=2 scaffold_35 . CDS 258840 259246 . - 0 ID=Phyra95235;Parent=Phyra95235;rank=1 scaffold_35 . biological_region 258953 258961 0.999 - . logic_name=eponine scaffold_35 . biological_region 258976 258980 0.999 + . logic_name=eponine scaffold_35 . repeat_region 260279 260307 . ? . description=trf scaffold_35 . biological_region 261047 261049 0.999 + . logic_name=eponine scaffold_35 . biological_region 261156 261162 0.999 - . logic_name=eponine scaffold_35 . biological_region 261452 261454 0.999 + . logic_name=eponine scaffold_35 . biological_region 261722 261723 0.999 + . logic_name=eponine scaffold_35 . biological_region 263338 263339 0.999 - . logic_name=eponine scaffold_35 . biological_region 263384 263388 0.999 - . logic_name=eponine scaffold_35 . repeat_region 266500 266549 . ? . description=dust scaffold_35 . repeat_region 267057 267070 . ? . description=dust scaffold_35 ensembl protein_coding_gene 260310 261911 . + . ID=Phyra71660;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_35000007;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 260310 261911 . + . ID=Phyra71660;Parent=Phyra71660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 260310 261911 . + 0 ID=Phyra71660;Parent=Phyra71660;rank=1 scaffold_35 . exon 260310 261911 . + . ID=Phyra71660.1;Parent=Phyra71660;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 267110 269104 . - . ID=Phyra71661;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_35000008;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 267110 269104 . - . ID=Phyra71661;Parent=Phyra71661;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 267110 269104 . - 0 ID=Phyra71661;Parent=Phyra71661;rank=1 scaffold_35 . exon 267110 269104 . - . ID=Phyra71661.1;Parent=Phyra71661;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 262463 266958 . + . ID=Phyra78894;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000089;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 262463 266958 . + . ID=Phyra78894;Parent=Phyra78894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 262463 266397 . + 0 ID=Phyra78894;Parent=Phyra78894;rank=1 scaffold_35 . exon 262463 266397 . + . ID=Phyra78894.1;Parent=Phyra78894;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 266802 266958 . + 0 ID=Phyra78894;Parent=Phyra78894;rank=2 scaffold_35 . exon 266802 266958 . + . ID=Phyra78894.2;Parent=Phyra78894;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . exon 257889 258043 . - . ID=Phyra95235.4;Parent=Phyra95235;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_35 . exon 258116 258127 . - . ID=Phyra95235.3;Parent=Phyra95235;constitutive=1;rank=3 scaffold_35 . exon 258224 258815 . - . ID=Phyra95235.2;Parent=Phyra95235;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . exon 258840 259246 . - . ID=Phyra95235.1;Parent=Phyra95235;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 269418 273266 . + . ID=Phyra78896;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000091;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 269418 273266 . + . ID=Phyra78896;Parent=Phyra78896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 269418 269726 . + 0 ID=Phyra78896;Parent=Phyra78896;rank=1 scaffold_35 . exon 269418 269726 . + . ID=Phyra78896.1;Parent=Phyra78896;constitutive=1;rank=1 scaffold_35 . CDS 269801 269955 . + 0 ID=Phyra78896;Parent=Phyra78896;rank=2 scaffold_35 . exon 269801 269955 . + . ID=Phyra78896.2;Parent=Phyra78896;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_35 . CDS 270017 273266 . + 0 ID=Phyra78896;Parent=Phyra78896;rank=3 scaffold_35 . exon 270017 273266 . + . ID=Phyra78896.3;Parent=Phyra78896;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 ensembl protein_coding_gene 273649 274426 . + . ID=Phyra78897;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000092;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 273649 274426 . + . ID=Phyra78897;Parent=Phyra78897;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 273649 273705 . + 0 ID=Phyra78897;Parent=Phyra78897;rank=1 scaffold_35 . exon 273649 273705 . + . ID=Phyra78897.1;Parent=Phyra78897;constitutive=1;rank=1 scaffold_35 . CDS 273767 274426 . + 0 ID=Phyra78897;Parent=Phyra78897;rank=2 scaffold_35 . exon 273767 274426 . + . ID=Phyra78897.2;Parent=Phyra78897;constitutive=1;rank=2 scaffold_35 . repeat_region 279919 280075 . ? . description=dust scaffold_35 . repeat_region 280708 280715 . ? . description=dust scaffold_35 . repeat_region 281988 282000 . ? . description=dust scaffold_35 . repeat_region 282542 282549 . ? . description=dust scaffold_35 . repeat_region 283521 283531 . ? . description=dust scaffold_35 . biological_region 283746 283748 0.999 + . logic_name=eponine scaffold_35 ensembl protein_coding_gene 281340 281567 . - . ID=Phyra47730;biotype=protein_coding;external_name=gwEuk.35.27.1;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 281340 281567 . - . ID=Phyra47730;Parent=Phyra47730;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 281340 281567 . - 0 ID=Phyra47730;Parent=Phyra47730;rank=1 scaffold_35 . exon 281340 281567 . - . ID=Phyra47730.1;Parent=Phyra47730;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 282553 287654 . + . ID=Phyra78898;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000093;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 282553 287654 . + . ID=Phyra78898;Parent=Phyra78898;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 282553 282558 . + 0 ID=Phyra78898;Parent=Phyra78898;rank=1 scaffold_35 . exon 282553 282558 . + . ID=Phyra78898.1;Parent=Phyra78898;constitutive=1;rank=1 scaffold_35 . CDS 282740 283063 . + 0 ID=Phyra78898;Parent=Phyra78898;rank=2 scaffold_35 . exon 282740 283063 . + . ID=Phyra78898.2;Parent=Phyra78898;constitutive=1;rank=2 scaffold_35 . CDS 283090 283249 . + 0 ID=Phyra78898;Parent=Phyra78898;rank=3 scaffold_35 . exon 283090 283249 . + . ID=Phyra78898.3;Parent=Phyra78898;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_35 . CDS 283271 283516 . + 0 ID=Phyra78898;Parent=Phyra78898;rank=4 scaffold_35 . exon 283271 283516 . + . ID=Phyra78898.4;Parent=Phyra78898;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_35 . CDS 283925 284136 . + 0 ID=Phyra78898;Parent=Phyra78898;rank=5 scaffold_35 . exon 283925 284136 . + . ID=Phyra78898.5;Parent=Phyra78898;constitutive=1;ensembl_phase=1;rank=5 scaffold_35 . CDS 284199 284923 . + 0 ID=Phyra78898;Parent=Phyra78898;rank=6 scaffold_35 . exon 284199 284923 . + . ID=Phyra78898.6;Parent=Phyra78898;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_35 . CDS 285000 285414 . + 0 ID=Phyra78898;Parent=Phyra78898;rank=7 scaffold_35 . exon 285000 285414 . + . ID=Phyra78898.7;Parent=Phyra78898;constitutive=1;ensembl_phase=2;rank=7 scaffold_35 . CDS 285479 285507 . + 0 ID=Phyra78898;Parent=Phyra78898;rank=8 scaffold_35 . exon 285479 285507 . + . ID=Phyra78898.8;Parent=Phyra78898;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_35 . CDS 285600 285614 . + 0 ID=Phyra78898;Parent=Phyra78898;rank=9 scaffold_35 . exon 285600 285614 . + . ID=Phyra78898.9;Parent=Phyra78898;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_35 . CDS 285700 285729 . + 0 ID=Phyra78898;Parent=Phyra78898;rank=10 scaffold_35 . exon 285700 285729 . + . ID=Phyra78898.10;Parent=Phyra78898;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_35 . CDS 285989 286800 . + 0 ID=Phyra78898;Parent=Phyra78898;rank=11 scaffold_35 . exon 285989 286800 . + . ID=Phyra78898.11;Parent=Phyra78898;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_35 . CDS 286897 287654 . + 0 ID=Phyra78898;Parent=Phyra78898;rank=12 scaffold_35 . exon 286897 287654 . + . ID=Phyra78898.12;Parent=Phyra78898;constitutive=1;ensembl_phase=1;rank=12 scaffold_35 . repeat_region 288363 288387 . ? . description=trf scaffold_35 . repeat_region 288863 288898 . ? . description=trf scaffold_35 . repeat_region 294540 294568 . ? . description=trf scaffold_35 ensembl protein_coding_gene 292936 294537 . - . ID=Phyra71662;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_35000009;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 292936 294537 . - . ID=Phyra71662;Parent=Phyra71662;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 292936 294537 . - 0 ID=Phyra71662;Parent=Phyra71662;rank=1 scaffold_35 . exon 292936 294537 . - . ID=Phyra71662.1;Parent=Phyra71662;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 287840 289375 . - . ID=Phyra78899;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000094;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 287840 289375 . - . ID=Phyra78899;Parent=Phyra78899;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 287840 288027 . - 0 ID=Phyra78899;Parent=Phyra78899;rank=8 scaffold_35 . exon 287840 288027 . - . ID=Phyra78899.8;Parent=Phyra78899;constitutive=1;ensembl_phase=1;rank=8 scaffold_35 . CDS 288090 288090 . - 0 ID=Phyra78899;Parent=Phyra78899;rank=7 scaffold_35 . exon 288090 288090 . - . ID=Phyra78899.7;Parent=Phyra78899;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_35 . CDS 288236 288331 . - 0 ID=Phyra78899;Parent=Phyra78899;rank=6 scaffold_35 . exon 288236 288331 . - . ID=Phyra78899.6;Parent=Phyra78899;constitutive=1;rank=6 scaffold_35 . CDS 288400 288495 . - 0 ID=Phyra78899;Parent=Phyra78899;rank=5 scaffold_35 . exon 288400 288495 . - . ID=Phyra78899.5;Parent=Phyra78899;constitutive=1;rank=5 scaffold_35 . CDS 288561 288630 . - 0 ID=Phyra78899;Parent=Phyra78899;rank=4 scaffold_35 . exon 288561 288630 . - . ID=Phyra78899.4;Parent=Phyra78899;constitutive=1;ensembl_phase=2;rank=4 scaffold_35 . CDS 288704 289089 . - 0 ID=Phyra78899;Parent=Phyra78899;rank=3 scaffold_35 . exon 288704 289089 . - . ID=Phyra78899.3;Parent=Phyra78899;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_35 . CDS 289128 289256 . - 0 ID=Phyra78899;Parent=Phyra78899;rank=2 scaffold_35 . exon 289128 289256 . - . ID=Phyra78899.2;Parent=Phyra78899;constitutive=1;rank=2 scaffold_35 . CDS 289340 289375 . - 0 ID=Phyra78899;Parent=Phyra78899;rank=1 scaffold_35 . exon 289340 289375 . - . ID=Phyra78899.1;Parent=Phyra78899;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 289522 290931 . + . ID=Phyra78900;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000095;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 289522 290931 . + . ID=Phyra78900;Parent=Phyra78900;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 289522 290931 . + 0 ID=Phyra78900;Parent=Phyra78900;rank=1 scaffold_35 . exon 289522 290931 . + . ID=Phyra78900.1;Parent=Phyra78900;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 295239 296633 . + . ID=Phyra78902;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000097;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 295239 296633 . + . ID=Phyra78902;Parent=Phyra78902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 295239 296633 . + 0 ID=Phyra78902;Parent=Phyra78902;rank=1 scaffold_35 . exon 295239 296633 . + . ID=Phyra78902.1;Parent=Phyra78902;constitutive=1;rank=1 scaffold_35 . biological_region 298662 298664 0.999 + . logic_name=eponine scaffold_35 . biological_region 298771 298777 0.999 - . logic_name=eponine scaffold_35 . biological_region 299067 299069 0.999 + . logic_name=eponine scaffold_35 . biological_region 299337 299338 0.999 + . logic_name=eponine scaffold_35 . biological_region 301752 301752 0.999 - . logic_name=eponine scaffold_35 ensembl protein_coding_gene 297925 299526 . + . ID=Phyra71663;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_35000010;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 297925 299526 . + . ID=Phyra71663;Parent=Phyra71663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 297925 299526 . + 0 ID=Phyra71663;Parent=Phyra71663;rank=1 scaffold_35 . exon 297925 299526 . + . ID=Phyra71663.1;Parent=Phyra71663;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 299909 301761 . - . ID=Phyra78904;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000099;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 299909 301761 . - . ID=Phyra78904;Parent=Phyra78904;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 299909 300248 . - 0 ID=Phyra78904;Parent=Phyra78904;rank=9 scaffold_35 . exon 299909 300248 . - . ID=Phyra78904.9;Parent=Phyra78904;constitutive=1;ensembl_phase=2;rank=9 scaffold_35 . CDS 300325 300391 . - 0 ID=Phyra78904;Parent=Phyra78904;rank=8 scaffold_35 . exon 300325 300391 . - . ID=Phyra78904.8;Parent=Phyra78904;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_35 . CDS 300466 300529 . - 0 ID=Phyra78904;Parent=Phyra78904;rank=7 scaffold_35 . exon 300466 300529 . - . ID=Phyra78904.7;Parent=Phyra78904;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_35 . CDS 300615 300746 . - 0 ID=Phyra78904;Parent=Phyra78904;rank=6 scaffold_35 . exon 300615 300746 . - . ID=Phyra78904.6;Parent=Phyra78904;constitutive=1;rank=6 scaffold_35 . CDS 300820 300964 . - 0 ID=Phyra78904;Parent=Phyra78904;rank=5 scaffold_35 . exon 300820 300964 . - . ID=Phyra78904.5;Parent=Phyra78904;constitutive=1;ensembl_phase=2;rank=5 scaffold_35 . CDS 301035 301114 . - 0 ID=Phyra78904;Parent=Phyra78904;rank=4 scaffold_35 . exon 301035 301114 . - . ID=Phyra78904.4;Parent=Phyra78904;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_35 . CDS 301190 301282 . - 0 ID=Phyra78904;Parent=Phyra78904;rank=3 scaffold_35 . exon 301190 301282 . - . ID=Phyra78904.3;Parent=Phyra78904;constitutive=1;rank=3 scaffold_35 . CDS 301349 301540 . - 0 ID=Phyra78904;Parent=Phyra78904;rank=2 scaffold_35 . exon 301349 301540 . - . ID=Phyra78904.2;Parent=Phyra78904;constitutive=1;rank=2 scaffold_35 . CDS 301612 301761 . - 0 ID=Phyra78904;Parent=Phyra78904;rank=1 scaffold_35 . exon 301612 301761 . - . ID=Phyra78904.1;Parent=Phyra78904;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 303236 303918 . - . ID=Phyra78905;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000100;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 303236 303918 . - . ID=Phyra78905;Parent=Phyra78905;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 303236 303288 . - 0 ID=Phyra78905;Parent=Phyra78905;rank=2 scaffold_35 . exon 303236 303288 . - . ID=Phyra78905.2;Parent=Phyra78905;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 303468 303918 . - 0 ID=Phyra78905;Parent=Phyra78905;rank=1 scaffold_35 . exon 303468 303918 . - . ID=Phyra78905.1;Parent=Phyra78905;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 304163 306348 . + . ID=Phyra78906;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000101;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 304163 306348 . + . ID=Phyra78906;Parent=Phyra78906;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 304163 304282 . + 0 ID=Phyra78906;Parent=Phyra78906;rank=1 scaffold_35 . exon 304163 304282 . + . ID=Phyra78906.1;Parent=Phyra78906;constitutive=1;rank=1 scaffold_35 . CDS 304338 304547 . + 0 ID=Phyra78906;Parent=Phyra78906;rank=2 scaffold_35 . exon 304338 304547 . + . ID=Phyra78906.2;Parent=Phyra78906;constitutive=1;rank=2 scaffold_35 . CDS 304628 304801 . + 0 ID=Phyra78906;Parent=Phyra78906;rank=3 scaffold_35 . exon 304628 304801 . + . ID=Phyra78906.3;Parent=Phyra78906;constitutive=1;rank=3 scaffold_35 . CDS 304878 304945 . + 0 ID=Phyra78906;Parent=Phyra78906;rank=4 scaffold_35 . exon 304878 304945 . + . ID=Phyra78906.4;Parent=Phyra78906;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_35 . CDS 305004 305055 . + 0 ID=Phyra78906;Parent=Phyra78906;rank=5 scaffold_35 . exon 305004 305055 . + . ID=Phyra78906.5;Parent=Phyra78906;constitutive=1;ensembl_phase=2;rank=5 scaffold_35 . CDS 305138 305212 . + 0 ID=Phyra78906;Parent=Phyra78906;rank=6 scaffold_35 . exon 305138 305212 . + . ID=Phyra78906.6;Parent=Phyra78906;constitutive=1;rank=6 scaffold_35 . CDS 305252 305490 . + 0 ID=Phyra78906;Parent=Phyra78906;rank=7 scaffold_35 . exon 305252 305490 . + . ID=Phyra78906.7;Parent=Phyra78906;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_35 . CDS 305567 306070 . + 0 ID=Phyra78906;Parent=Phyra78906;rank=8 scaffold_35 . exon 305567 306070 . + . ID=Phyra78906.8;Parent=Phyra78906;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_35 . CDS 306153 306348 . + 0 ID=Phyra78906;Parent=Phyra78906;rank=9 scaffold_35 . exon 306153 306348 . + . ID=Phyra78906.9;Parent=Phyra78906;constitutive=1;ensembl_phase=2;rank=9 scaffold_35 ensembl protein_coding_gene 306441 308747 . - . ID=Phyra78907;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000102;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 306441 308747 . - . ID=Phyra78907;Parent=Phyra78907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 306441 308747 . - 0 ID=Phyra78907;Parent=Phyra78907;rank=1 scaffold_35 . exon 306441 308747 . - . ID=Phyra78907.1;Parent=Phyra78907;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 310996 311807 . - . ID=Phyra78908;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000103;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 310996 311807 . - . ID=Phyra78908;Parent=Phyra78908;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 310996 311003 . - 0 ID=Phyra78908;Parent=Phyra78908;rank=2 scaffold_35 . exon 310996 311003 . - . ID=Phyra78908.2;Parent=Phyra78908;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 311030 311807 . - 0 ID=Phyra78908;Parent=Phyra78908;rank=1 scaffold_35 . exon 311030 311807 . - . ID=Phyra78908.1;Parent=Phyra78908;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 312580 314071 . + . ID=Phyra78909;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000104;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 312580 314071 . + . ID=Phyra78909;Parent=Phyra78909;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 312580 312618 . + 0 ID=Phyra78909;Parent=Phyra78909;rank=1 scaffold_35 . exon 312580 312618 . + . ID=Phyra78909.1;Parent=Phyra78909;constitutive=1;rank=1 scaffold_35 . CDS 312703 312771 . + 0 ID=Phyra78909;Parent=Phyra78909;rank=2 scaffold_35 . exon 312703 312771 . + . ID=Phyra78909.2;Parent=Phyra78909;constitutive=1;rank=2 scaffold_35 . CDS 312914 313554 . + 0 ID=Phyra78909;Parent=Phyra78909;rank=3 scaffold_35 . exon 312914 313554 . + . ID=Phyra78909.3;Parent=Phyra78909;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_35 . CDS 313647 313677 . + 0 ID=Phyra78909;Parent=Phyra78909;rank=4 scaffold_35 . exon 313647 313677 . + . ID=Phyra78909.4;Parent=Phyra78909;constitutive=1;ensembl_phase=2;rank=4 scaffold_35 . CDS 313748 314071 . + 0 ID=Phyra78909;Parent=Phyra78909;rank=5 scaffold_35 . exon 313748 314071 . + . ID=Phyra78909.5;Parent=Phyra78909;constitutive=1;rank=5 scaffold_35 ensembl protein_coding_gene 316993 319077 . + . ID=Phyra78910;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000105;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 316993 319077 . + . ID=Phyra78910;Parent=Phyra78910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 316993 319077 . + 0 ID=Phyra78910;Parent=Phyra78910;rank=1 scaffold_35 . exon 316993 319077 . + . ID=Phyra78910.1;Parent=Phyra78910;constitutive=1;rank=1 scaffold_35 . biological_region 317757 317762 0.999 - . logic_name=eponine scaffold_35 . biological_region 317813 317815 0.999 - . logic_name=eponine scaffold_35 . biological_region 317850 317852 0.999 - . logic_name=eponine scaffold_35 . repeat_region 325047 325094 . ? . description=dust scaffold_35 . repeat_region 325068 325094 . ? . description=trf scaffold_35 ensembl protein_coding_gene 326207 326648 . + . ID=Phyra47760;biotype=protein_coding;external_name=gwEuk.35.57.1;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 326207 326648 . + . ID=Phyra47760;Parent=Phyra47760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 326207 326276 . + 0 ID=Phyra47760;Parent=Phyra47760;rank=1 scaffold_35 . exon 326207 326276 . + . ID=Phyra47760.1;Parent=Phyra47760;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 326350 326648 . + 0 ID=Phyra47760;Parent=Phyra47760;rank=2 scaffold_35 . exon 326350 326648 . + . ID=Phyra47760.2;Parent=Phyra47760;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 ensembl protein_coding_gene 319495 323097 . - . ID=Phyra95237;biotype=protein_coding;external_name=C_scaffold_35000021;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 319495 323097 . - . ID=Phyra95237;Parent=Phyra95237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 319495 319774 . - 0 ID=Phyra95237;Parent=Phyra95237;rank=11 scaffold_35 . exon 319495 319774 . - . ID=Phyra95237.11;Parent=Phyra95237;constitutive=1;ensembl_phase=2;rank=11 scaffold_35 . CDS 319841 319980 . - 0 ID=Phyra95237;Parent=Phyra95237;rank=10 scaffold_35 . exon 319841 319980 . - . ID=Phyra95237.10;Parent=Phyra95237;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_35 . CDS 320054 320598 . - 0 ID=Phyra95237;Parent=Phyra95237;rank=9 scaffold_35 . exon 320054 320598 . - . ID=Phyra95237.9;Parent=Phyra95237;constitutive=1;ensembl_phase=1;rank=9 scaffold_35 . CDS 320629 320845 . - 0 ID=Phyra95237;Parent=Phyra95237;rank=8 scaffold_35 . exon 320629 320845 . - . ID=Phyra95237.8;Parent=Phyra95237;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_35 . CDS 320921 321210 . - 0 ID=Phyra95237;Parent=Phyra95237;rank=7 scaffold_35 . exon 320921 321210 . - . ID=Phyra95237.7;Parent=Phyra95237;constitutive=1;ensembl_phase=1;rank=7 scaffold_35 . CDS 321351 321993 . - 0 ID=Phyra95237;Parent=Phyra95237;rank=6 scaffold_35 . exon 321351 321993 . - . ID=Phyra95237.6;Parent=Phyra95237;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_35 . CDS 322068 322113 . - 0 ID=Phyra95237;Parent=Phyra95237;rank=5 scaffold_35 . exon 322068 322113 . - . ID=Phyra95237.5;Parent=Phyra95237;constitutive=1;ensembl_phase=2;rank=5 scaffold_35 . CDS 322193 322260 . - 0 ID=Phyra95237;Parent=Phyra95237;rank=4 scaffold_35 . exon 322193 322260 . - . ID=Phyra95237.4;Parent=Phyra95237;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_35 . CDS 322352 322496 . - 0 ID=Phyra95237;Parent=Phyra95237;rank=3 scaffold_35 . exon 322352 322496 . - . ID=Phyra95237.3;Parent=Phyra95237;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 322580 322801 . - 0 ID=Phyra95237;Parent=Phyra95237;rank=2 scaffold_35 . exon 322580 322801 . - . ID=Phyra95237.2;Parent=Phyra95237;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_35 . CDS 322877 323097 . - 0 ID=Phyra95237;Parent=Phyra95237;rank=1 scaffold_35 . exon 322877 323097 . - . ID=Phyra95237.1;Parent=Phyra95237;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 323973 325975 . - . ID=Phyra95239;biotype=protein_coding;external_name=C_scaffold_35000023;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 323973 325975 . - . ID=Phyra95239;Parent=Phyra95239;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 323973 324069 . - 0 ID=Phyra95239;Parent=Phyra95239;rank=9 scaffold_35 . exon 323973 324069 . - . ID=Phyra95239.9;Parent=Phyra95239;constitutive=1;ensembl_phase=2;rank=9 scaffold_35 . CDS 324160 324301 . - 0 ID=Phyra95239;Parent=Phyra95239;rank=8 scaffold_35 . exon 324160 324301 . - . ID=Phyra95239.8;Parent=Phyra95239;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_35 . CDS 324372 324462 . - 0 ID=Phyra95239;Parent=Phyra95239;rank=7 scaffold_35 . exon 324372 324462 . - . ID=Phyra95239.7;Parent=Phyra95239;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_35 . CDS 324540 324654 . - 0 ID=Phyra95239;Parent=Phyra95239;rank=6 scaffold_35 . exon 324540 324654 . - . ID=Phyra95239.6;Parent=Phyra95239;constitutive=1;ensembl_phase=2;rank=6 scaffold_35 . CDS 324737 324819 . - 0 ID=Phyra95239;Parent=Phyra95239;rank=5 scaffold_35 . exon 324737 324819 . - . ID=Phyra95239.5;Parent=Phyra95239;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_35 . CDS 324893 325134 . - 0 ID=Phyra95239;Parent=Phyra95239;rank=4 scaffold_35 . exon 324893 325134 . - . ID=Phyra95239.4;Parent=Phyra95239;constitutive=1;ensembl_phase=1;rank=4 scaffold_35 . CDS 325183 325367 . - 0 ID=Phyra95239;Parent=Phyra95239;rank=3 scaffold_35 . exon 325183 325367 . - . ID=Phyra95239.3;Parent=Phyra95239;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 325438 325555 . - 0 ID=Phyra95239;Parent=Phyra95239;rank=2 scaffold_35 . exon 325438 325555 . - . ID=Phyra95239.2;Parent=Phyra95239;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_35 . CDS 325621 325975 . - 0 ID=Phyra95239;Parent=Phyra95239;rank=1 scaffold_35 . exon 325621 325975 . - . ID=Phyra95239.1;Parent=Phyra95239;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 330968 332710 . + . ID=Phyra71664;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_35000011;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 330968 332710 . + . ID=Phyra71664;Parent=Phyra71664;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 330968 331196 . + 0 ID=Phyra71664;Parent=Phyra71664;rank=1 scaffold_35 . exon 330968 331196 . + . ID=Phyra71664.1;Parent=Phyra71664;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 331266 331363 . + 0 ID=Phyra71664;Parent=Phyra71664;rank=2 scaffold_35 . exon 331266 331363 . + . ID=Phyra71664.2;Parent=Phyra71664;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 331440 331631 . + 0 ID=Phyra71664;Parent=Phyra71664;rank=3 scaffold_35 . exon 331440 331631 . + . ID=Phyra71664.3;Parent=Phyra71664;constitutive=1;rank=3 scaffold_35 . CDS 331694 331807 . + 0 ID=Phyra71664;Parent=Phyra71664;rank=4 scaffold_35 . exon 331694 331807 . + . ID=Phyra71664.4;Parent=Phyra71664;constitutive=1;rank=4 scaffold_35 . CDS 331876 332337 . + 0 ID=Phyra71664;Parent=Phyra71664;rank=5 scaffold_35 . exon 331876 332337 . + . ID=Phyra71664.5;Parent=Phyra71664;constitutive=1;rank=5 scaffold_35 . CDS 332417 332572 . + 0 ID=Phyra71664;Parent=Phyra71664;rank=6 scaffold_35 . exon 332417 332572 . + . ID=Phyra71664.6;Parent=Phyra71664;constitutive=1;rank=6 scaffold_35 . CDS 332645 332710 . + 0 ID=Phyra71664;Parent=Phyra71664;rank=7 scaffold_35 . exon 332645 332710 . + . ID=Phyra71664.7;Parent=Phyra71664;constitutive=1;rank=7 scaffold_35 ensembl protein_coding_gene 335867 336610 . - . ID=Phyra71665;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_35000012;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 335867 336610 . - . ID=Phyra71665;Parent=Phyra71665;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 335867 336610 . - 0 ID=Phyra71665;Parent=Phyra71665;rank=1 scaffold_35 . exon 335867 336610 . - . ID=Phyra71665.1;Parent=Phyra71665;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 327700 328136 . - . ID=Phyra78914;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000109;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 327700 328136 . - . ID=Phyra78914;Parent=Phyra78914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 327700 327923 . - 0 ID=Phyra78914;Parent=Phyra78914;rank=2 scaffold_35 . exon 327700 327923 . - . ID=Phyra78914.2;Parent=Phyra78914;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 328004 328136 . - 0 ID=Phyra78914;Parent=Phyra78914;rank=1 scaffold_35 . exon 328004 328136 . - . ID=Phyra78914.1;Parent=Phyra78914;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 336740 338360 . - . ID=Phyra78917;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000112;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 336740 338360 . - . ID=Phyra78917;Parent=Phyra78917;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 336740 336973 . - 0 ID=Phyra78917;Parent=Phyra78917;rank=5 scaffold_35 . exon 336740 336973 . - . ID=Phyra78917.5;Parent=Phyra78917;constitutive=1;rank=5 scaffold_35 . CDS 337046 337331 . - 0 ID=Phyra78917;Parent=Phyra78917;rank=4 scaffold_35 . exon 337046 337331 . - . ID=Phyra78917.4;Parent=Phyra78917;constitutive=1;ensembl_phase=2;rank=4 scaffold_35 . CDS 337406 337850 . - 0 ID=Phyra78917;Parent=Phyra78917;rank=3 scaffold_35 . CDS 337924 338069 . - 0 ID=Phyra78917;Parent=Phyra78917;rank=2 scaffold_35 . CDS 338146 338360 . - 0 ID=Phyra78917;Parent=Phyra78917;rank=1 scaffold_35 . biological_region 338226 338226 0.999 + . logic_name=eponine scaffold_35 . biological_region 338293 338295 0.999 - . logic_name=eponine scaffold_35 . biological_region 339667 339667 0.999 + . logic_name=eponine scaffold_35 . biological_region 342563 342565 0.999 + . logic_name=eponine scaffold_35 . biological_region 344240 344240 0.999 - . logic_name=eponine scaffold_35 . biological_region 344322 344325 0.999 + . logic_name=eponine scaffold_35 . biological_region 344361 344366 0.999 - . logic_name=eponine scaffold_35 . biological_region 344460 344465 0.999 + . logic_name=eponine scaffold_35 . biological_region 344601 344604 0.999 + . logic_name=eponine scaffold_35 . biological_region 344618 344621 0.999 - . logic_name=eponine scaffold_35 . biological_region 344644 344646 0.999 + . logic_name=eponine scaffold_35 . biological_region 344723 344726 0.999 + . logic_name=eponine scaffold_35 . biological_region 344825 344828 0.999 - . logic_name=eponine scaffold_35 . biological_region 344984 344985 0.999 - . logic_name=eponine scaffold_35 . biological_region 345350 345353 0.999 + . logic_name=eponine scaffold_35 . biological_region 345379 345382 0.999 + . logic_name=eponine scaffold_35 ensembl protein_coding_gene 338635 340116 . - . ID=Phyra47768;biotype=protein_coding;external_name=gwEuk.35.65.1;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 338635 340116 . - . ID=Phyra47768;Parent=Phyra47768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 338635 338832 . - 0 ID=Phyra47768;Parent=Phyra47768;rank=4 scaffold_35 . exon 338635 338832 . - . ID=Phyra47768.4;Parent=Phyra47768;constitutive=1;rank=4 scaffold_35 . CDS 338912 339197 . - 0 ID=Phyra47768;Parent=Phyra47768;rank=3 scaffold_35 . exon 338912 339197 . - . ID=Phyra47768.3;Parent=Phyra47768;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 339265 339855 . - 0 ID=Phyra47768;Parent=Phyra47768;rank=2 scaffold_35 . exon 339265 339855 . - . ID=Phyra47768.2;Parent=Phyra47768;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_35 . CDS 339959 340116 . - 0 ID=Phyra47768;Parent=Phyra47768;rank=1 scaffold_35 . exon 339959 340116 . - . ID=Phyra47768.1;Parent=Phyra47768;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . exon 337406 337850 . - . ID=Phyra78917.3;Parent=Phyra78917;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_35 . exon 337924 338069 . - . ID=Phyra78917.2;Parent=Phyra78917;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_35 . exon 338146 338360 . - . ID=Phyra78917.1;Parent=Phyra78917;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 341426 341914 . + . ID=Phyra78919;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000114;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 341426 341914 . + . ID=Phyra78919;Parent=Phyra78919;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 341426 341914 . + 0 ID=Phyra78919;Parent=Phyra78919;rank=1 scaffold_35 . exon 341426 341914 . + . ID=Phyra78919.1;Parent=Phyra78919;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 343654 345015 . + . ID=Phyra78920;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000115;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 343654 345015 . + . ID=Phyra78920;Parent=Phyra78920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 343654 345015 . + 0 ID=Phyra78920;Parent=Phyra78920;rank=1 scaffold_35 . exon 343654 345015 . + . ID=Phyra78920.1;Parent=Phyra78920;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 345818 349830 . - . ID=Phyra78921;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000116;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 345818 349830 . - . ID=Phyra78921;Parent=Phyra78921;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 345818 346050 . - 0 ID=Phyra78921;Parent=Phyra78921;rank=4 scaffold_35 . exon 345818 346050 . - . ID=Phyra78921.4;Parent=Phyra78921;constitutive=1;ensembl_phase=1;rank=4 scaffold_35 . CDS 346197 346336 . - 0 ID=Phyra78921;Parent=Phyra78921;rank=3 scaffold_35 . exon 346197 346336 . - . ID=Phyra78921.3;Parent=Phyra78921;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 346414 346482 . - 0 ID=Phyra78921;Parent=Phyra78921;rank=2 scaffold_35 . exon 346414 346482 . - . ID=Phyra78921.2;Parent=Phyra78921;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_35 . CDS 346565 349830 . - 0 ID=Phyra78921;Parent=Phyra78921;rank=1 scaffold_35 . exon 346565 349830 . - . ID=Phyra78921.1;Parent=Phyra78921;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 350525 353119 . + . ID=Phyra71667;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_35000014;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 350525 353119 . + . ID=Phyra71667;Parent=Phyra71667;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 350525 353119 . + 0 ID=Phyra71667;Parent=Phyra71667;rank=1 scaffold_35 . exon 350525 353119 . + . ID=Phyra71667.1;Parent=Phyra71667;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 353414 355418 . + . ID=Phyra78923;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000118;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 353414 355418 . + . ID=Phyra78923;Parent=Phyra78923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 353414 354047 . + 0 ID=Phyra78923;Parent=Phyra78923;rank=1 scaffold_35 . exon 353414 354047 . + . ID=Phyra78923.1;Parent=Phyra78923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 354705 355006 . + 0 ID=Phyra78923;Parent=Phyra78923;rank=2 scaffold_35 . exon 354705 355006 . + . ID=Phyra78923.2;Parent=Phyra78923;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 355074 355418 . + 0 ID=Phyra78923;Parent=Phyra78923;rank=3 scaffold_35 . exon 355074 355418 . + . ID=Phyra78923.3;Parent=Phyra78923;constitutive=1;rank=3 scaffold_35 ensembl protein_coding_gene 355802 358765 . + . ID=Phyra95245;biotype=protein_coding;external_name=C_scaffold_35000029;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 355802 358765 . + . ID=Phyra95245;Parent=Phyra95245;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 355802 356315 . + 0 ID=Phyra95245;Parent=Phyra95245;rank=1 scaffold_35 . exon 355802 356315 . + . ID=Phyra95245.1;Parent=Phyra95245;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 356406 356882 . + 0 ID=Phyra95245;Parent=Phyra95245;rank=2 scaffold_35 . exon 356406 356882 . + . ID=Phyra95245.2;Parent=Phyra95245;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 357000 357146 . + 0 ID=Phyra95245;Parent=Phyra95245;rank=3 scaffold_35 . exon 357000 357146 . + . ID=Phyra95245.3;Parent=Phyra95245;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 357285 357743 . + 0 ID=Phyra95245;Parent=Phyra95245;rank=4 scaffold_35 . CDS 357828 358091 . + 0 ID=Phyra95245;Parent=Phyra95245;rank=5 scaffold_35 . CDS 358172 358182 . + 0 ID=Phyra95245;Parent=Phyra95245;rank=6 scaffold_35 . CDS 358247 358765 . + 0 ID=Phyra95245;Parent=Phyra95245;rank=7 scaffold_35 . repeat_region 359160 359209 . ? . description=trf scaffold_35 . repeat_region 359167 359199 . ? . description=trf scaffold_35 . biological_region 364736 364740 0.999 - . logic_name=eponine scaffold_35 . biological_region 365053 365057 0.999 + . logic_name=eponine scaffold_35 . biological_region 365187 365188 0.999 - . logic_name=eponine scaffold_35 . biological_region 366069 366071 0.999 + . logic_name=eponine scaffold_35 ensembl protein_coding_gene 365769 367100 . + . ID=Phyra78927;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000122;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 365769 367100 . + . ID=Phyra78927;Parent=Phyra78927;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 365769 367100 . + 0 ID=Phyra78927;Parent=Phyra78927;rank=1 scaffold_35 . exon 365769 367100 . + . ID=Phyra78927.1;Parent=Phyra78927;constitutive=1;rank=1 scaffold_35 . exon 357285 357743 . + . ID=Phyra95245.4;Parent=Phyra95245;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_35 . exon 357828 358091 . + . ID=Phyra95245.5;Parent=Phyra95245;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_35 . exon 358172 358182 . + . ID=Phyra95245.6;Parent=Phyra95245;constitutive=1;ensembl_phase=1;rank=6 scaffold_35 . exon 358247 358765 . + . ID=Phyra95245.7;Parent=Phyra95245;constitutive=1;rank=7 scaffold_35 ensembl protein_coding_gene 360709 362097 . - . ID=Phyra95246;biotype=protein_coding;external_name=C_scaffold_35000030;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 360709 362097 . - . ID=Phyra95246;Parent=Phyra95246;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 360709 361050 . - 0 ID=Phyra95246;Parent=Phyra95246;rank=4 scaffold_35 . exon 360709 361050 . - . ID=Phyra95246.4;Parent=Phyra95246;constitutive=1;rank=4 scaffold_35 . CDS 361087 361204 . - 0 ID=Phyra95246;Parent=Phyra95246;rank=3 scaffold_35 . exon 361087 361204 . - . ID=Phyra95246.3;Parent=Phyra95246;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 361277 361538 . - 0 ID=Phyra95246;Parent=Phyra95246;rank=2 scaffold_35 . exon 361277 361538 . - . ID=Phyra95246.2;Parent=Phyra95246;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_35 . CDS 361617 362097 . - 0 ID=Phyra95246;Parent=Phyra95246;rank=1 scaffold_35 . exon 361617 362097 . - . ID=Phyra95246.1;Parent=Phyra95246;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 362218 364453 . + . ID=Phyra95247;biotype=protein_coding;external_name=C_scaffold_35000031;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 362218 364453 . + . ID=Phyra95247;Parent=Phyra95247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 362218 362340 . + 0 ID=Phyra95247;Parent=Phyra95247;rank=1 scaffold_35 . exon 362218 362340 . + . ID=Phyra95247.1;Parent=Phyra95247;constitutive=1;rank=1 scaffold_35 . CDS 362418 362534 . + 0 ID=Phyra95247;Parent=Phyra95247;rank=2 scaffold_35 . exon 362418 362534 . + . ID=Phyra95247.2;Parent=Phyra95247;constitutive=1;rank=2 scaffold_35 . CDS 362891 362973 . + 0 ID=Phyra95247;Parent=Phyra95247;rank=3 scaffold_35 . exon 362891 362973 . + . ID=Phyra95247.3;Parent=Phyra95247;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_35 . CDS 363048 363244 . + 0 ID=Phyra95247;Parent=Phyra95247;rank=4 scaffold_35 . exon 363048 363244 . + . ID=Phyra95247.4;Parent=Phyra95247;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_35 . CDS 363512 363739 . + 0 ID=Phyra95247;Parent=Phyra95247;rank=5 scaffold_35 . exon 363512 363739 . + . ID=Phyra95247.5;Parent=Phyra95247;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_35 . CDS 363782 363868 . + 0 ID=Phyra95247;Parent=Phyra95247;rank=6 scaffold_35 . exon 363782 363868 . + . ID=Phyra95247.6;Parent=Phyra95247;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_35 . CDS 363936 364453 . + 0 ID=Phyra95247;Parent=Phyra95247;rank=7 scaffold_35 . exon 363936 364453 . + . ID=Phyra95247.7;Parent=Phyra95247;constitutive=1;ensembl_phase=1;rank=7 scaffold_35 . repeat_region 368784 368842 . ? . description=dust scaffold_35 . repeat_region 370832 370991 . ? . description=dust scaffold_35 . repeat_region 371451 371458 . ? . description=dust scaffold_35 ensembl protein_coding_gene 369057 369515 . - . ID=Phyra71668;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_35000015;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 369057 369515 . - . ID=Phyra71668;Parent=Phyra71668;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 369057 369515 . - 0 ID=Phyra71668;Parent=Phyra71668;rank=1 scaffold_35 . exon 369057 369515 . - . ID=Phyra71668.1;Parent=Phyra71668;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 369881 371398 . + . ID=Phyra78929;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000124;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 369881 371398 . + . ID=Phyra78929;Parent=Phyra78929;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 369881 371398 . + 0 ID=Phyra78929;Parent=Phyra78929;rank=1 scaffold_35 . exon 369881 371398 . + . ID=Phyra78929.1;Parent=Phyra78929;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 371879 373399 . - . ID=Phyra78930;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000125;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 371879 373399 . - . ID=Phyra78930;Parent=Phyra78930;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 371879 372055 . - 0 ID=Phyra78930;Parent=Phyra78930;rank=4 scaffold_35 . exon 371879 372055 . - . ID=Phyra78930.4;Parent=Phyra78930;constitutive=1;rank=4 scaffold_35 . CDS 372119 372787 . - 0 ID=Phyra78930;Parent=Phyra78930;rank=3 scaffold_35 . exon 372119 372787 . - . ID=Phyra78930.3;Parent=Phyra78930;constitutive=1;rank=3 scaffold_35 . CDS 372882 373093 . - 0 ID=Phyra78930;Parent=Phyra78930;rank=2 scaffold_35 . exon 372882 373093 . - . ID=Phyra78930.2;Parent=Phyra78930;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 373168 373399 . - 0 ID=Phyra78930;Parent=Phyra78930;rank=1 scaffold_35 . exon 373168 373399 . - . ID=Phyra78930.1;Parent=Phyra78930;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 373547 376354 . + . ID=Phyra78931;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000126;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 373547 376354 . + . ID=Phyra78931;Parent=Phyra78931;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 373547 376354 . + 0 ID=Phyra78931;Parent=Phyra78931;rank=1 scaffold_35 . exon 373547 376354 . + . ID=Phyra78931.1;Parent=Phyra78931;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 376660 378273 . - . ID=Phyra78932;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000127;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 376660 378273 . - . ID=Phyra78932;Parent=Phyra78932;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 376660 377826 . - 0 ID=Phyra78932;Parent=Phyra78932;rank=3 scaffold_35 . exon 376660 377826 . - . ID=Phyra78932.3;Parent=Phyra78932;constitutive=1;rank=3 scaffold_35 . CDS 377906 378012 . - 0 ID=Phyra78932;Parent=Phyra78932;rank=2 scaffold_35 . CDS 378072 378273 . - 0 ID=Phyra78932;Parent=Phyra78932;rank=1 scaffold_35 . biological_region 378049 378057 0.999 + . logic_name=eponine scaffold_35 . biological_region 386783 386784 0.999 + . logic_name=eponine scaffold_35 ensembl protein_coding_gene 381627 384508 . + . ID=Phyra47796;biotype=protein_coding;external_name=gwEuk.35.93.1;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 381627 384508 . + . ID=Phyra47796;Parent=Phyra47796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 381627 381946 . + 0 ID=Phyra47796;Parent=Phyra47796;rank=1 scaffold_35 . exon 381627 381946 . + . ID=Phyra47796.1;Parent=Phyra47796;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 382008 382074 . + 0 ID=Phyra47796;Parent=Phyra47796;rank=2 scaffold_35 . exon 382008 382074 . + . ID=Phyra47796.2;Parent=Phyra47796;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 382138 382884 . + 0 ID=Phyra47796;Parent=Phyra47796;rank=3 scaffold_35 . exon 382138 382884 . + . ID=Phyra47796.3;Parent=Phyra47796;constitutive=1;rank=3 scaffold_35 . CDS 382961 383036 . + 0 ID=Phyra47796;Parent=Phyra47796;rank=4 scaffold_35 . exon 382961 383036 . + . ID=Phyra47796.4;Parent=Phyra47796;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_35 . CDS 383118 384367 . + 0 ID=Phyra47796;Parent=Phyra47796;rank=5 scaffold_35 . exon 383118 384367 . + . ID=Phyra47796.5;Parent=Phyra47796;constitutive=1;ensembl_phase=1;rank=5 scaffold_35 . CDS 384446 384508 . + 0 ID=Phyra47796;Parent=Phyra47796;rank=6 scaffold_35 . exon 384446 384508 . + . ID=Phyra47796.6;Parent=Phyra47796;constitutive=1;rank=6 scaffold_35 ensembl protein_coding_gene 378557 380343 . - . ID=Phyra71669;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_35000016;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 378557 380343 . - . ID=Phyra71669;Parent=Phyra71669;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 378557 378896 . - 0 ID=Phyra71669;Parent=Phyra71669;rank=9 scaffold_35 . exon 378557 378896 . - . ID=Phyra71669.9;Parent=Phyra71669;constitutive=1;ensembl_phase=2;rank=9 scaffold_35 . CDS 378973 379039 . - 0 ID=Phyra71669;Parent=Phyra71669;rank=8 scaffold_35 . exon 378973 379039 . - . ID=Phyra71669.8;Parent=Phyra71669;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_35 . CDS 379114 379177 . - 0 ID=Phyra71669;Parent=Phyra71669;rank=7 scaffold_35 . exon 379114 379177 . - . ID=Phyra71669.7;Parent=Phyra71669;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_35 . CDS 379263 379394 . - 0 ID=Phyra71669;Parent=Phyra71669;rank=6 scaffold_35 . exon 379263 379394 . - . ID=Phyra71669.6;Parent=Phyra71669;constitutive=1;rank=6 scaffold_35 . CDS 379468 379612 . - 0 ID=Phyra71669;Parent=Phyra71669;rank=5 scaffold_35 . exon 379468 379612 . - . ID=Phyra71669.5;Parent=Phyra71669;constitutive=1;ensembl_phase=2;rank=5 scaffold_35 . CDS 379683 379762 . - 0 ID=Phyra71669;Parent=Phyra71669;rank=4 scaffold_35 . exon 379683 379762 . - . ID=Phyra71669.4;Parent=Phyra71669;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_35 . CDS 379838 379930 . - 0 ID=Phyra71669;Parent=Phyra71669;rank=3 scaffold_35 . exon 379838 379930 . - . ID=Phyra71669.3;Parent=Phyra71669;constitutive=1;rank=3 scaffold_35 . CDS 379997 380188 . - 0 ID=Phyra71669;Parent=Phyra71669;rank=2 scaffold_35 . exon 379997 380188 . - . ID=Phyra71669.2;Parent=Phyra71669;constitutive=1;rank=2 scaffold_35 . CDS 380260 380343 . - 0 ID=Phyra71669;Parent=Phyra71669;rank=1 scaffold_35 . exon 380260 380343 . - . ID=Phyra71669.1;Parent=Phyra71669;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 386757 387431 . + . ID=Phyra71670;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_35000017;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 386757 387431 . + . ID=Phyra71670;Parent=Phyra71670;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 386757 387431 . + 0 ID=Phyra71670;Parent=Phyra71670;rank=1 scaffold_35 . exon 386757 387431 . + . ID=Phyra71670.1;Parent=Phyra71670;constitutive=1;rank=1 scaffold_35 . exon 377906 378012 . - . ID=Phyra78932.2;Parent=Phyra78932;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . exon 378072 378273 . - . ID=Phyra78932.1;Parent=Phyra78932;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 384839 385814 . - . ID=Phyra78935;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000130;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 384839 385814 . - . ID=Phyra78935;Parent=Phyra78935;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 384839 385641 . - 0 ID=Phyra78935;Parent=Phyra78935;rank=2 scaffold_35 . exon 384839 385641 . - . ID=Phyra78935.2;Parent=Phyra78935;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 385718 385814 . - 0 ID=Phyra78935;Parent=Phyra78935;rank=1 scaffold_35 . exon 385718 385814 . - . ID=Phyra78935.1;Parent=Phyra78935;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 386019 386570 . - . ID=Phyra78936;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000131;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 386019 386570 . - . ID=Phyra78936;Parent=Phyra78936;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 386019 386570 . - 0 ID=Phyra78936;Parent=Phyra78936;rank=1 scaffold_35 . exon 386019 386570 . - . ID=Phyra78936.1;Parent=Phyra78936;constitutive=1;rank=1 scaffold_35 . repeat_region 386852 386891 . ? . description=trf scaffold_35 . repeat_region 391546 391703 . ? . description=dust scaffold_35 . repeat_region 392541 392561 . ? . description=trf scaffold_35 . repeat_region 392731 396959 . ? . description=dust scaffold_35 ensembl protein_coding_gene 392383 397848 . - . ID=Phyra78938;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000133;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 392383 397848 . - . ID=Phyra78938;Parent=Phyra78938;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 392383 392403 . - 0 ID=Phyra78938;Parent=Phyra78938;rank=5 scaffold_35 . exon 392383 392403 . - . ID=Phyra78938.5;Parent=Phyra78938;constitutive=1;rank=5 scaffold_35 . CDS 392430 392533 . - 0 ID=Phyra78938;Parent=Phyra78938;rank=4 scaffold_35 . exon 392430 392533 . - . ID=Phyra78938.4;Parent=Phyra78938;constitutive=1;ensembl_phase=1;rank=4 scaffold_35 . CDS 392575 392590 . - 0 ID=Phyra78938;Parent=Phyra78938;rank=3 scaffold_35 . exon 392575 392590 . - . ID=Phyra78938.3;Parent=Phyra78938;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_35 . CDS 396964 397057 . - 0 ID=Phyra78938;Parent=Phyra78938;rank=2 scaffold_35 . CDS 397109 397848 . - 0 ID=Phyra78938;Parent=Phyra78938;rank=1 scaffold_35 ensembl protein_coding_gene 405847 407358 . + . ID=Phyra47811;biotype=protein_coding;external_name=gwEuk.35.108.1;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 405847 407358 . + . ID=Phyra47811;Parent=Phyra47811;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 405847 406068 . + 0 ID=Phyra47811;Parent=Phyra47811;rank=1 scaffold_35 . exon 405847 406068 . + . ID=Phyra47811.1;Parent=Phyra47811;constitutive=1;rank=1 scaffold_35 . CDS 406149 407088 . + 0 ID=Phyra47811;Parent=Phyra47811;rank=2 scaffold_35 . exon 406149 407088 . + . ID=Phyra47811.2;Parent=Phyra47811;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_35 . CDS 407171 407358 . + 0 ID=Phyra47811;Parent=Phyra47811;rank=3 scaffold_35 . exon 396964 397057 . - . ID=Phyra78938.2;Parent=Phyra78938;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . exon 397109 397848 . - . ID=Phyra78938.1;Parent=Phyra78938;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 401737 404940 . + . ID=Phyra78939;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000134;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 401737 404940 . + . ID=Phyra78939;Parent=Phyra78939;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 401737 404940 . + 0 ID=Phyra78939;Parent=Phyra78939;rank=1 scaffold_35 . exon 401737 404940 . + . ID=Phyra78939.1;Parent=Phyra78939;constitutive=1;rank=1 scaffold_35 . biological_region 407347 407348 0.999 - . logic_name=eponine scaffold_35 . biological_region 416001 416003 0.999 + . logic_name=eponine scaffold_35 . exon 407171 407358 . + . ID=Phyra47811.3;Parent=Phyra47811;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 ensembl protein_coding_gene 412328 417846 . + . ID=Phyra78941;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000136;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 412328 417846 . + . ID=Phyra78941;Parent=Phyra78941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 412328 412352 . + 0 ID=Phyra78941;Parent=Phyra78941;rank=1 scaffold_35 . exon 412328 412352 . + . ID=Phyra78941.1;Parent=Phyra78941;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 412427 412839 . + 0 ID=Phyra78941;Parent=Phyra78941;rank=2 scaffold_35 . exon 412427 412839 . + . ID=Phyra78941.2;Parent=Phyra78941;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 412901 413697 . + 0 ID=Phyra78941;Parent=Phyra78941;rank=3 scaffold_35 . exon 412901 413697 . + . ID=Phyra78941.3;Parent=Phyra78941;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_35 . CDS 413766 413975 . + 0 ID=Phyra78941;Parent=Phyra78941;rank=4 scaffold_35 . exon 413766 413975 . + . ID=Phyra78941.4;Parent=Phyra78941;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_35 . CDS 414193 414284 . + 0 ID=Phyra78941;Parent=Phyra78941;rank=5 scaffold_35 . exon 414193 414284 . + . ID=Phyra78941.5;Parent=Phyra78941;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_35 . CDS 414366 414688 . + 0 ID=Phyra78941;Parent=Phyra78941;rank=6 scaffold_35 . exon 414366 414688 . + . ID=Phyra78941.6;Parent=Phyra78941;constitutive=1;ensembl_phase=1;rank=6 scaffold_35 . CDS 414759 415278 . + 0 ID=Phyra78941;Parent=Phyra78941;rank=7 scaffold_35 . exon 414759 415278 . + . ID=Phyra78941.7;Parent=Phyra78941;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_35 . CDS 415315 415564 . + 0 ID=Phyra78941;Parent=Phyra78941;rank=8 scaffold_35 . exon 415315 415564 . + . ID=Phyra78941.8;Parent=Phyra78941;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_35 . CDS 415624 415787 . + 0 ID=Phyra78941;Parent=Phyra78941;rank=9 scaffold_35 . exon 415624 415787 . + . ID=Phyra78941.9;Parent=Phyra78941;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_35 . CDS 416204 416679 . + 0 ID=Phyra78941;Parent=Phyra78941;rank=10 scaffold_35 . exon 416204 416679 . + . ID=Phyra78941.10;Parent=Phyra78941;constitutive=1;ensembl_phase=1;rank=10 scaffold_35 . CDS 416730 417565 . + 0 ID=Phyra78941;Parent=Phyra78941;rank=11 scaffold_35 . CDS 417648 417846 . + 0 ID=Phyra78941;Parent=Phyra78941;rank=12 scaffold_35 ensembl protein_coding_gene 410984 411571 . - . ID=Phyra95248;biotype=protein_coding;external_name=C_scaffold_35000032;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 410984 411571 . - . ID=Phyra95248;Parent=Phyra95248;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 410984 411085 . - 0 ID=Phyra95248;Parent=Phyra95248;rank=4 scaffold_35 . exon 410984 411085 . - . ID=Phyra95248.4;Parent=Phyra95248;constitutive=1;rank=4 scaffold_35 . CDS 411153 411250 . - 0 ID=Phyra95248;Parent=Phyra95248;rank=3 scaffold_35 . exon 411153 411250 . - . ID=Phyra95248.3;Parent=Phyra95248;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 411322 411420 . - 0 ID=Phyra95248;Parent=Phyra95248;rank=2 scaffold_35 . exon 411322 411420 . - . ID=Phyra95248.2;Parent=Phyra95248;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 411484 411571 . - 0 ID=Phyra95248;Parent=Phyra95248;rank=1 scaffold_35 . exon 411484 411571 . - . ID=Phyra95248.1;Parent=Phyra95248;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . exon 416730 417565 . + . ID=Phyra78941.11;Parent=Phyra78941;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_35 . exon 417648 417846 . + . ID=Phyra78941.12;Parent=Phyra78941;constitutive=1;ensembl_phase=2;rank=12 scaffold_35 ensembl protein_coding_gene 418198 419404 . + . ID=Phyra78942;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000137;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 418198 419404 . + . ID=Phyra78942;Parent=Phyra78942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 418198 418390 . + 0 ID=Phyra78942;Parent=Phyra78942;rank=1 scaffold_35 . exon 418198 418390 . + . ID=Phyra78942.1;Parent=Phyra78942;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 418457 419327 . + 0 ID=Phyra78942;Parent=Phyra78942;rank=2 scaffold_35 . exon 418457 419327 . + . ID=Phyra78942.2;Parent=Phyra78942;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_35 . CDS 419371 419404 . + 0 ID=Phyra78942;Parent=Phyra78942;rank=3 scaffold_35 . exon 419371 419404 . + . ID=Phyra78942.3;Parent=Phyra78942;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 ensembl protein_coding_gene 419695 421381 . - . ID=Phyra78943;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000138;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 419695 421381 . - . ID=Phyra78943;Parent=Phyra78943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 419695 419763 . - 0 ID=Phyra78943;Parent=Phyra78943;rank=3 scaffold_35 . exon 419695 419763 . - . ID=Phyra78943.3;Parent=Phyra78943;constitutive=1;rank=3 scaffold_35 . CDS 419971 420007 . - 0 ID=Phyra78943;Parent=Phyra78943;rank=2 scaffold_35 . exon 419971 420007 . - . ID=Phyra78943.2;Parent=Phyra78943;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 420078 421381 . - 0 ID=Phyra78943;Parent=Phyra78943;rank=1 scaffold_35 . exon 420078 421381 . - . ID=Phyra78943.1;Parent=Phyra78943;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 423790 424893 . - . ID=Phyra78944;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000139;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 423790 424893 . - . ID=Phyra78944;Parent=Phyra78944;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 423790 424321 . - 0 ID=Phyra78944;Parent=Phyra78944;rank=3 scaffold_35 . exon 423790 424321 . - . ID=Phyra78944.3;Parent=Phyra78944;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 424381 424562 . - 0 ID=Phyra78944;Parent=Phyra78944;rank=2 scaffold_35 . exon 424381 424562 . - . ID=Phyra78944.2;Parent=Phyra78944;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_35 . CDS 424621 424893 . - 0 ID=Phyra78944;Parent=Phyra78944;rank=1 scaffold_35 . exon 424621 424893 . - . ID=Phyra78944.1;Parent=Phyra78944;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 425086 425751 . + . ID=Phyra78945;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000140;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 425086 425751 . + . ID=Phyra78945;Parent=Phyra78945;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 425086 425184 . + 0 ID=Phyra78945;Parent=Phyra78945;rank=1 scaffold_35 . exon 425086 425184 . + . ID=Phyra78945.1;Parent=Phyra78945;constitutive=1;rank=1 scaffold_35 . CDS 425242 425751 . + 0 ID=Phyra78945;Parent=Phyra78945;rank=2 scaffold_35 . exon 425242 425751 . + . ID=Phyra78945.2;Parent=Phyra78945;constitutive=1;rank=2 scaffold_35 . repeat_region 431748 431756 . ? . description=dust scaffold_35 ensembl protein_coding_gene 435295 437115 . + . ID=Phyra78948;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000143;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 435295 437115 . + . ID=Phyra78948;Parent=Phyra78948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 435295 435303 . + 0 ID=Phyra78948;Parent=Phyra78948;rank=1 scaffold_35 . exon 435295 435303 . + . ID=Phyra78948.1;Parent=Phyra78948;constitutive=1;rank=1 scaffold_35 . CDS 435516 436840 . + 0 ID=Phyra78948;Parent=Phyra78948;rank=2 scaffold_35 . exon 435516 436840 . + . ID=Phyra78948.2;Parent=Phyra78948;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_35 . CDS 436920 437115 . + 0 ID=Phyra78948;Parent=Phyra78948;rank=3 scaffold_35 ensembl protein_coding_gene 429168 429718 . + . ID=Phyra95250;biotype=protein_coding;external_name=C_scaffold_35000034;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 429168 429718 . + . ID=Phyra95250;Parent=Phyra95250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 429168 429233 . + 0 ID=Phyra95250;Parent=Phyra95250;rank=1 scaffold_35 . exon 429168 429233 . + . ID=Phyra95250.1;Parent=Phyra95250;constitutive=1;rank=1 scaffold_35 . CDS 429306 429449 . + 0 ID=Phyra95250;Parent=Phyra95250;rank=2 scaffold_35 . exon 429306 429449 . + . ID=Phyra95250.2;Parent=Phyra95250;constitutive=1;rank=2 scaffold_35 . CDS 429535 429637 . + 0 ID=Phyra95250;Parent=Phyra95250;rank=3 scaffold_35 . exon 429535 429637 . + . ID=Phyra95250.3;Parent=Phyra95250;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_35 . CDS 429666 429718 . + 0 ID=Phyra95250;Parent=Phyra95250;rank=4 scaffold_35 . exon 429666 429718 . + . ID=Phyra95250.4;Parent=Phyra95250;constitutive=1;ensembl_phase=1;rank=4 scaffold_35 ensembl protein_coding_gene 430164 431186 . - . ID=Phyra95251;biotype=protein_coding;external_name=C_scaffold_35000035;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 430164 431186 . - . ID=Phyra95251;Parent=Phyra95251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 430164 430264 . - 0 ID=Phyra95251;Parent=Phyra95251;rank=5 scaffold_35 . exon 430164 430264 . - . ID=Phyra95251.5;Parent=Phyra95251;constitutive=1;ensembl_phase=1;rank=5 scaffold_35 . CDS 430343 430427 . - 0 ID=Phyra95251;Parent=Phyra95251;rank=4 scaffold_35 . exon 430343 430427 . - . ID=Phyra95251.4;Parent=Phyra95251;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_35 . CDS 430461 430662 . - 0 ID=Phyra95251;Parent=Phyra95251;rank=3 scaffold_35 . exon 430461 430662 . - . ID=Phyra95251.3;Parent=Phyra95251;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 430866 430988 . - 0 ID=Phyra95251;Parent=Phyra95251;rank=2 scaffold_35 . exon 430866 430988 . - . ID=Phyra95251.2;Parent=Phyra95251;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_35 . CDS 431071 431186 . - 0 ID=Phyra95251;Parent=Phyra95251;rank=1 scaffold_35 . exon 431071 431186 . - . ID=Phyra95251.1;Parent=Phyra95251;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 431378 434256 . - . ID=Phyra95252;biotype=protein_coding;external_name=C_scaffold_35000036;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 431378 434256 . - . ID=Phyra95252;Parent=Phyra95252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 431378 431549 . - 0 ID=Phyra95252;Parent=Phyra95252;rank=9 scaffold_35 . exon 431378 431549 . - . ID=Phyra95252.9;Parent=Phyra95252;constitutive=1;ensembl_phase=2;rank=9 scaffold_35 . CDS 431614 431724 . - 0 ID=Phyra95252;Parent=Phyra95252;rank=8 scaffold_35 . exon 431614 431724 . - . ID=Phyra95252.8;Parent=Phyra95252;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_35 . CDS 431794 431899 . - 0 ID=Phyra95252;Parent=Phyra95252;rank=7 scaffold_35 . exon 431794 431899 . - . ID=Phyra95252.7;Parent=Phyra95252;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_35 . CDS 431959 432144 . - 0 ID=Phyra95252;Parent=Phyra95252;rank=6 scaffold_35 . exon 431959 432144 . - . ID=Phyra95252.6;Parent=Phyra95252;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_35 . CDS 432208 432387 . - 0 ID=Phyra95252;Parent=Phyra95252;rank=5 scaffold_35 . exon 432208 432387 . - . ID=Phyra95252.5;Parent=Phyra95252;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_35 . CDS 432484 432598 . - 0 ID=Phyra95252;Parent=Phyra95252;rank=4 scaffold_35 . exon 432484 432598 . - . ID=Phyra95252.4;Parent=Phyra95252;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_35 . CDS 433186 433344 . - 0 ID=Phyra95252;Parent=Phyra95252;rank=3 scaffold_35 . exon 433186 433344 . - . ID=Phyra95252.3;Parent=Phyra95252;constitutive=1;rank=3 scaffold_35 . CDS 433646 433789 . - 0 ID=Phyra95252;Parent=Phyra95252;rank=2 scaffold_35 . exon 433646 433789 . - . ID=Phyra95252.2;Parent=Phyra95252;constitutive=1;rank=2 scaffold_35 . CDS 433939 434256 . - 0 ID=Phyra95252;Parent=Phyra95252;rank=1 scaffold_35 . exon 433939 434256 . - . ID=Phyra95252.1;Parent=Phyra95252;constitutive=1;rank=1 scaffold_35 . biological_region 442982 442982 0.999 + . logic_name=eponine scaffold_35 . biological_region 445418 445418 0.999 - . logic_name=eponine scaffold_35 . exon 436920 437115 . + . ID=Phyra78948.3;Parent=Phyra78948;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 ensembl protein_coding_gene 437336 442426 . - . ID=Phyra78949;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000144;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 437336 442426 . - . ID=Phyra78949;Parent=Phyra78949;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 437336 437743 . - 0 ID=Phyra78949;Parent=Phyra78949;rank=8 scaffold_35 . exon 437336 437743 . - . ID=Phyra78949.8;Parent=Phyra78949;constitutive=1;rank=8 scaffold_35 . CDS 437968 437981 . - 0 ID=Phyra78949;Parent=Phyra78949;rank=7 scaffold_35 . exon 437968 437981 . - . ID=Phyra78949.7;Parent=Phyra78949;constitutive=1;ensembl_phase=1;rank=7 scaffold_35 . CDS 438057 438735 . - 0 ID=Phyra78949;Parent=Phyra78949;rank=6 scaffold_35 . exon 438057 438735 . - . ID=Phyra78949.6;Parent=Phyra78949;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_35 . CDS 438804 438950 . - 0 ID=Phyra78949;Parent=Phyra78949;rank=5 scaffold_35 . exon 438804 438950 . - . ID=Phyra78949.5;Parent=Phyra78949;constitutive=1;rank=5 scaffold_35 . CDS 439027 440707 . - 0 ID=Phyra78949;Parent=Phyra78949;rank=4 scaffold_35 . exon 439027 440707 . - . ID=Phyra78949.4;Parent=Phyra78949;constitutive=1;ensembl_phase=2;rank=4 scaffold_35 . CDS 440850 441587 . - 0 ID=Phyra78949;Parent=Phyra78949;rank=3 scaffold_35 . exon 440850 441587 . - . ID=Phyra78949.3;Parent=Phyra78949;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_35 . CDS 441673 442267 . - 0 ID=Phyra78949;Parent=Phyra78949;rank=2 scaffold_35 . exon 441673 442267 . - . ID=Phyra78949.2;Parent=Phyra78949;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_35 . CDS 442339 442426 . - 0 ID=Phyra78949;Parent=Phyra78949;rank=1 scaffold_35 . exon 442339 442426 . - . ID=Phyra78949.1;Parent=Phyra78949;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 442629 444495 . + . ID=Phyra78950;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000145;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 442629 444495 . + . ID=Phyra78950;Parent=Phyra78950;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 442629 443162 . + 0 ID=Phyra78950;Parent=Phyra78950;rank=1 scaffold_35 . exon 442629 443162 . + . ID=Phyra78950.1;Parent=Phyra78950;constitutive=1;rank=1 scaffold_35 . CDS 443233 444495 . + 0 ID=Phyra78950;Parent=Phyra78950;rank=2 scaffold_35 . exon 443233 444495 . + . ID=Phyra78950.2;Parent=Phyra78950;constitutive=1;rank=2 scaffold_35 ensembl protein_coding_gene 444722 445552 . - . ID=Phyra78951;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000146;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 444722 445552 . - . ID=Phyra78951;Parent=Phyra78951;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 444722 444869 . - 0 ID=Phyra78951;Parent=Phyra78951;rank=4 scaffold_35 . exon 444722 444869 . - . ID=Phyra78951.4;Parent=Phyra78951;constitutive=1;ensembl_phase=2;rank=4 scaffold_35 . CDS 444935 444999 . - 0 ID=Phyra78951;Parent=Phyra78951;rank=3 scaffold_35 . exon 444935 444999 . - . ID=Phyra78951.3;Parent=Phyra78951;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_35 . CDS 445088 445234 . - 0 ID=Phyra78951;Parent=Phyra78951;rank=2 scaffold_35 . exon 445088 445234 . - . ID=Phyra78951.2;Parent=Phyra78951;constitutive=1;rank=2 scaffold_35 . CDS 445328 445552 . - 0 ID=Phyra78951;Parent=Phyra78951;rank=1 scaffold_35 . exon 445328 445552 . - . ID=Phyra78951.1;Parent=Phyra78951;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 445883 447569 . - . ID=Phyra78952;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000147;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 445883 447569 . - . ID=Phyra78952;Parent=Phyra78952;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 445883 447177 . - 0 ID=Phyra78952;Parent=Phyra78952;rank=2 scaffold_35 . exon 445883 447177 . - . ID=Phyra78952.2;Parent=Phyra78952;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 447293 447569 . - 0 ID=Phyra78952;Parent=Phyra78952;rank=1 scaffold_35 . repeat_region 448041 448394 . ? . description=dust scaffold_35 . repeat_region 449137 449186 . ? . description=dust scaffold_35 ensembl protein_coding_gene 449938 450132 . + . ID=Phyra47817;biotype=protein_coding;external_name=gwEuk.35.114.1;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 449938 450132 . + . ID=Phyra47817;Parent=Phyra47817;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 449938 450132 . + 0 ID=Phyra47817;Parent=Phyra47817;rank=1 scaffold_35 . exon 449938 450132 . + . ID=Phyra47817.1;Parent=Phyra47817;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 451090 452316 . + . ID=Phyra71671;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_35000018;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 451090 452316 . + . ID=Phyra71671;Parent=Phyra71671;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 451090 452316 . + 0 ID=Phyra71671;Parent=Phyra71671;rank=1 scaffold_35 . exon 451090 452316 . + . ID=Phyra71671.1;Parent=Phyra71671;constitutive=1;rank=1 scaffold_35 . exon 447293 447569 . - . ID=Phyra78952.1;Parent=Phyra78952;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 452431 453407 . - . ID=Phyra78954;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_35000149;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 452431 453407 . - . ID=Phyra78954;Parent=Phyra78954;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 452431 453376 . - 0 ID=Phyra78954;Parent=Phyra78954;rank=2 scaffold_35 . exon 452431 453376 . - . ID=Phyra78954.2;Parent=Phyra78954;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 453403 453407 . - 0 ID=Phyra78954;Parent=Phyra78954;rank=1 scaffold_35 . exon 453403 453407 . - . ID=Phyra78954.1;Parent=Phyra78954;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 453524 456622 . + . ID=Phyra95254;biotype=protein_coding;external_name=C_scaffold_35000038;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 453524 456622 . + . ID=Phyra95254;Parent=Phyra95254;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 453524 453805 . + 0 ID=Phyra95254;Parent=Phyra95254;rank=1 scaffold_35 . exon 453524 453805 . + . ID=Phyra95254.1;Parent=Phyra95254;constitutive=1;rank=1 scaffold_35 . CDS 453870 453964 . + 0 ID=Phyra95254;Parent=Phyra95254;rank=2 scaffold_35 . exon 453870 453964 . + . ID=Phyra95254.2;Parent=Phyra95254;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_35 . CDS 454032 454192 . + 0 ID=Phyra95254;Parent=Phyra95254;rank=3 scaffold_35 . exon 454032 454192 . + . ID=Phyra95254.3;Parent=Phyra95254;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 454232 454353 . + 0 ID=Phyra95254;Parent=Phyra95254;rank=4 scaffold_35 . exon 454232 454353 . + . ID=Phyra95254.4;Parent=Phyra95254;constitutive=1;ensembl_phase=1;rank=4 scaffold_35 . CDS 454464 454511 . + 0 ID=Phyra95254;Parent=Phyra95254;rank=5 scaffold_35 . exon 454464 454511 . + . ID=Phyra95254.5;Parent=Phyra95254;constitutive=1;rank=5 scaffold_35 . CDS 454791 454918 . + 0 ID=Phyra95254;Parent=Phyra95254;rank=6 scaffold_35 . exon 454791 454918 . + . ID=Phyra95254.6;Parent=Phyra95254;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_35 . CDS 455240 455721 . + 0 ID=Phyra95254;Parent=Phyra95254;rank=7 scaffold_35 . exon 455240 455721 . + . ID=Phyra95254.7;Parent=Phyra95254;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_35 . CDS 455783 456115 . + 0 ID=Phyra95254;Parent=Phyra95254;rank=8 scaffold_35 . exon 455783 456115 . + . ID=Phyra95254.8;Parent=Phyra95254;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_35 . CDS 456197 456281 . + 0 ID=Phyra95254;Parent=Phyra95254;rank=9 scaffold_35 . exon 456197 456281 . + . ID=Phyra95254.9;Parent=Phyra95254;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_35 . CDS 456361 456478 . + 0 ID=Phyra95254;Parent=Phyra95254;rank=10 scaffold_35 . CDS 456569 456622 . + 0 ID=Phyra95254;Parent=Phyra95254;rank=11 scaffold_35 . biological_region 457942 457945 0.999 - . logic_name=eponine scaffold_35 . biological_region 458188 458189 0.999 - . logic_name=eponine scaffold_35 . repeat_region 459309 459359 . ? . description=trf scaffold_35 . biological_region 461242 461247 0.999 + . logic_name=eponine scaffold_35 . biological_region 462915 462919 0.999 + . logic_name=eponine scaffold_35 . biological_region 464264 464269 0.999 + . logic_name=eponine scaffold_35 . biological_region 464315 464320 0.999 + . logic_name=eponine scaffold_35 . biological_region 464381 464383 0.999 - . logic_name=eponine scaffold_35 . biological_region 464418 464422 0.999 + . logic_name=eponine scaffold_35 . exon 456361 456478 . + . ID=Phyra95254.10;Parent=Phyra95254;constitutive=1;ensembl_phase=2;rank=10 scaffold_35 . exon 456569 456622 . + . ID=Phyra95254.11;Parent=Phyra95254;constitutive=1;rank=11 scaffold_35 ensembl protein_coding_gene 456742 458252 . - . ID=Phyra95256;biotype=protein_coding;external_name=C_scaffold_35000040;logic_name=jgi_phyra1 scaffold_35 ensembl transcript 456742 458252 . - . ID=Phyra95256;Parent=Phyra95256;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_35 . CDS 456742 456976 . - 0 ID=Phyra95256;Parent=Phyra95256;rank=4 scaffold_35 . exon 456742 456976 . - . ID=Phyra95256.4;Parent=Phyra95256;constitutive=1;ensembl_phase=2;rank=4 scaffold_35 . CDS 456997 457010 . - 0 ID=Phyra95256;Parent=Phyra95256;rank=3 scaffold_35 . exon 456997 457010 . - . ID=Phyra95256.3;Parent=Phyra95256;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_35 . CDS 457120 457694 . - 0 ID=Phyra95256;Parent=Phyra95256;rank=2 scaffold_35 . exon 457120 457694 . - . ID=Phyra95256.2;Parent=Phyra95256;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 457814 458252 . - 0 ID=Phyra95256;Parent=Phyra95256;rank=1 scaffold_35 . exon 457814 458252 . - . ID=Phyra95256.1;Parent=Phyra95256;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_34 1 490259 scaffold_34 . repeat_region 806 858 . ? . description=trf scaffold_34 . repeat_region 815 858 . ? . description=trf scaffold_34 . repeat_region 1004 2254 . ? . description=dust scaffold_34 . biological_region 2436 2442 0.999 + . logic_name=eponine scaffold_34 . biological_region 2844 2844 0.999 + . logic_name=eponine scaffold_34 . repeat_region 3416 3493 . ? . description=trf scaffold_34 . biological_region 4153 4156 0.999 - . logic_name=eponine scaffold_34 . repeat_region 4269 4541 . ? . description=dust scaffold_34 . repeat_region 6029 7155 . ? . description=dust scaffold_34 . repeat_region 8945 10000 . ? . description=dust scaffold_34 . repeat_region 18359 18570 . - . description=GypsyPi-1c_LTR scaffold_34 ensembl protein_coding_gene 18832 20146 . - . ID=Phyra78701;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000001;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 18832 20146 . - . ID=Phyra78701;Parent=Phyra78701;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 18832 19052 . - 0 ID=Phyra78701;Parent=Phyra78701;rank=5 scaffold_34 . exon 18832 19052 . - . ID=Phyra78701.5;Parent=Phyra78701;constitutive=1;ensembl_phase=1;rank=5 scaffold_34 . CDS 19131 19293 . - 0 ID=Phyra78701;Parent=Phyra78701;rank=4 scaffold_34 . exon 19131 19293 . - . ID=Phyra78701.4;Parent=Phyra78701;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_34 . CDS 19378 19524 . - 0 ID=Phyra78701;Parent=Phyra78701;rank=3 scaffold_34 . exon 19378 19524 . - . ID=Phyra78701.3;Parent=Phyra78701;constitutive=1;rank=3 scaffold_34 . CDS 19592 19957 . - 0 ID=Phyra78701;Parent=Phyra78701;rank=2 scaffold_34 . exon 19592 19957 . - . ID=Phyra78701.2;Parent=Phyra78701;constitutive=1;rank=2 scaffold_34 . CDS 19988 20146 . - 0 ID=Phyra78701;Parent=Phyra78701;rank=1 scaffold_34 . repeat_region 20589 20596 . ? . description=dust scaffold_34 . biological_region 21826 21826 0.999 + . logic_name=eponine scaffold_34 . repeat_region 26149 26158 . ? . description=dust scaffold_34 . repeat_region 26306 26314 . ? . description=dust scaffold_34 . repeat_region 26825 27150 . ? . description=dust scaffold_34 . repeat_region 28423 28433 . ? . description=dust scaffold_34 . exon 19988 20146 . - . ID=Phyra78701.1;Parent=Phyra78701;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 21059 22879 . + . ID=Phyra78702;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000002;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 21059 22879 . + . ID=Phyra78702;Parent=Phyra78702;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 21059 22879 . + 0 ID=Phyra78702;Parent=Phyra78702;rank=1 scaffold_34 . exon 21059 22879 . + . ID=Phyra78702.1;Parent=Phyra78702;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 24283 26136 . + . ID=Phyra78703;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000003;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 24283 26136 . + . ID=Phyra78703;Parent=Phyra78703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 24283 26136 . + 0 ID=Phyra78703;Parent=Phyra78703;rank=1 scaffold_34 . exon 24283 26136 . + . ID=Phyra78703.1;Parent=Phyra78703;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 27718 29006 . - . ID=Phyra78704;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000004;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 27718 29006 . - . ID=Phyra78704;Parent=Phyra78704;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 27718 27926 . - 0 ID=Phyra78704;Parent=Phyra78704;rank=4 scaffold_34 . exon 27718 27926 . - . ID=Phyra78704.4;Parent=Phyra78704;constitutive=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 27995 28157 . - 0 ID=Phyra78704;Parent=Phyra78704;rank=3 scaffold_34 . exon 27995 28157 . - . ID=Phyra78704.3;Parent=Phyra78704;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_34 . CDS 28232 28378 . - 0 ID=Phyra78704;Parent=Phyra78704;rank=2 scaffold_34 . exon 28232 28378 . - . ID=Phyra78704.2;Parent=Phyra78704;constitutive=1;rank=2 scaffold_34 . CDS 28446 29006 . - 0 ID=Phyra78704;Parent=Phyra78704;rank=1 scaffold_34 . exon 28446 29006 . - . ID=Phyra78704.1;Parent=Phyra78704;constitutive=1;rank=1 scaffold_34 . repeat_region 35607 36418 . ? . description=trf scaffold_34 . repeat_region 35706 35771 . ? . description=trf scaffold_34 . repeat_region 35859 35924 . ? . description=trf scaffold_34 . repeat_region 36012 36077 . ? . description=trf scaffold_34 . repeat_region 36165 36230 . ? . description=trf scaffold_34 . repeat_region 36318 36383 . ? . description=trf scaffold_34 ensembl protein_coding_gene 32872 33330 . - . ID=Phyra47648;biotype=protein_coding;external_name=gwEuk.34.27.1;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 32872 33330 . - . ID=Phyra47648;Parent=Phyra47648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 32872 33330 . - 0 ID=Phyra47648;Parent=Phyra47648;rank=1 scaffold_34 . exon 32872 33330 . - . ID=Phyra47648.1;Parent=Phyra47648;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 30207 32084 . + . ID=Phyra78705;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000005;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 30207 32084 . + . ID=Phyra78705;Parent=Phyra78705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 30207 32084 . + 0 ID=Phyra78705;Parent=Phyra78705;rank=1 scaffold_34 . exon 30207 32084 . + . ID=Phyra78705.1;Parent=Phyra78705;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 34280 36649 . - . ID=Phyra78707;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000007;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 34280 36649 . - . ID=Phyra78707;Parent=Phyra78707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 34280 36649 . - 0 ID=Phyra78707;Parent=Phyra78707;rank=1 scaffold_34 . exon 34280 36649 . - . ID=Phyra78707.1;Parent=Phyra78707;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 38577 40961 . + . ID=Phyra78708;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000008;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 38577 40961 . + . ID=Phyra78708;Parent=Phyra78708;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 38577 38820 . + 0 ID=Phyra78708;Parent=Phyra78708;rank=1 scaffold_34 . exon 38577 38820 . + . ID=Phyra78708.1;Parent=Phyra78708;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 38887 38962 . + 0 ID=Phyra78708;Parent=Phyra78708;rank=2 scaffold_34 . exon 38887 38962 . + . ID=Phyra78708.2;Parent=Phyra78708;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_34 . CDS 39034 40645 . + 0 ID=Phyra78708;Parent=Phyra78708;rank=3 scaffold_34 . exon 39034 40645 . + . ID=Phyra78708.3;Parent=Phyra78708;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 40809 40961 . + 0 ID=Phyra78708;Parent=Phyra78708;rank=4 scaffold_34 . repeat_region 40522 40568 . ? . description=dust scaffold_34 . biological_region 40884 40885 0.999 + . logic_name=eponine scaffold_34 . biological_region 44268 44274 0.999 - . logic_name=eponine scaffold_34 . biological_region 45801 45804 0.999 + . logic_name=eponine scaffold_34 . biological_region 45844 45848 0.999 + . logic_name=eponine scaffold_34 . biological_region 45938 45943 0.999 - . logic_name=eponine scaffold_34 . biological_region 47366 47370 0.999 - . logic_name=eponine scaffold_34 . biological_region 47454 47454 0.999 + . logic_name=eponine scaffold_34 . biological_region 48393 48398 0.999 + . logic_name=eponine scaffold_34 . exon 40809 40961 . + . ID=Phyra78708.4;Parent=Phyra78708;constitutive=1;rank=4 scaffold_34 ensembl protein_coding_gene 41294 42748 . + . ID=Phyra78709;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000009;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 41294 42748 . + . ID=Phyra78709;Parent=Phyra78709;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 41294 42748 . + 0 ID=Phyra78709;Parent=Phyra78709;rank=1 scaffold_34 . exon 41294 42748 . + . ID=Phyra78709.1;Parent=Phyra78709;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 44624 46243 . + . ID=Phyra78710;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000010;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 44624 46243 . + . ID=Phyra78710;Parent=Phyra78710;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 44624 46243 . + 0 ID=Phyra78710;Parent=Phyra78710;rank=1 scaffold_34 . exon 44624 46243 . + . ID=Phyra78710.1;Parent=Phyra78710;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 47650 50193 . + . ID=Phyra95204;biotype=protein_coding;external_name=C_scaffold_34000004;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 47650 50193 . + . ID=Phyra95204;Parent=Phyra95204;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 47650 48486 . + 0 ID=Phyra95204;Parent=Phyra95204;rank=1 scaffold_34 . exon 47650 48486 . + . ID=Phyra95204.1;Parent=Phyra95204;constitutive=1;rank=1 scaffold_34 . CDS 48592 48764 . + 0 ID=Phyra95204;Parent=Phyra95204;rank=2 scaffold_34 . exon 48592 48764 . + . ID=Phyra95204.2;Parent=Phyra95204;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_34 . CDS 48816 48958 . + 0 ID=Phyra95204;Parent=Phyra95204;rank=3 scaffold_34 . exon 48816 48958 . + . ID=Phyra95204.3;Parent=Phyra95204;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 49022 49452 . + 0 ID=Phyra95204;Parent=Phyra95204;rank=4 scaffold_34 . exon 49022 49452 . + . ID=Phyra95204.4;Parent=Phyra95204;constitutive=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 49595 49647 . + 0 ID=Phyra95204;Parent=Phyra95204;rank=5 scaffold_34 . CDS 49785 49921 . + 0 ID=Phyra95204;Parent=Phyra95204;rank=6 scaffold_34 . CDS 49946 50017 . + 0 ID=Phyra95204;Parent=Phyra95204;rank=7 scaffold_34 . CDS 50069 50193 . + 0 ID=Phyra95204;Parent=Phyra95204;rank=8 scaffold_34 ensembl protein_coding_gene 52862 54763 . - . ID=Phyra78712;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000012;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 52862 54763 . - . ID=Phyra78712;Parent=Phyra78712;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 52862 54763 . - 0 ID=Phyra78712;Parent=Phyra78712;rank=1 scaffold_34 . exon 52862 54763 . - . ID=Phyra78712.1;Parent=Phyra78712;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 56753 59504 . - . ID=Phyra78713;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000013;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 56753 59504 . - . ID=Phyra78713;Parent=Phyra78713;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 56753 59337 . - 0 ID=Phyra78713;Parent=Phyra78713;rank=2 scaffold_34 . exon 56753 59337 . - . ID=Phyra78713.2;Parent=Phyra78713;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 59432 59504 . - 0 ID=Phyra78713;Parent=Phyra78713;rank=1 scaffold_34 . exon 49595 49647 . + . ID=Phyra95204.5;Parent=Phyra95204;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_34 . exon 49785 49921 . + . ID=Phyra95204.6;Parent=Phyra95204;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_34 . exon 49946 50017 . + . ID=Phyra95204.7;Parent=Phyra95204;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_34 . exon 50069 50193 . + . ID=Phyra95204.8;Parent=Phyra95204;constitutive=1;ensembl_phase=1;rank=8 scaffold_34 . repeat_region 60838 60849 . ? . description=dust scaffold_34 . repeat_region 61069 61088 . ? . description=trf scaffold_34 . repeat_region 61069 61088 . ? . description=dust scaffold_34 . repeat_region 61315 61330 . ? . description=dust scaffold_34 . biological_region 61364 61369 0.999 + . logic_name=eponine scaffold_34 . biological_region 61545 61545 0.999 - . logic_name=eponine scaffold_34 . biological_region 62445 62448 0.999 + . logic_name=eponine scaffold_34 . biological_region 62482 62489 0.999 + . logic_name=eponine scaffold_34 . biological_region 62523 62525 0.999 - . logic_name=eponine scaffold_34 . biological_region 62523 62526 0.999 + . logic_name=eponine scaffold_34 . biological_region 62541 62545 0.999 - . logic_name=eponine scaffold_34 . biological_region 62624 62631 0.999 + . logic_name=eponine scaffold_34 . biological_region 62684 62688 0.999 + . logic_name=eponine scaffold_34 . repeat_region 66235 66271 . ? . description=trf scaffold_34 . repeat_region 66492 66499 . ? . description=dust scaffold_34 . biological_region 66783 66785 0.999 - . logic_name=eponine scaffold_34 . biological_region 66835 66843 0.999 + . logic_name=eponine scaffold_34 . biological_region 67999 68005 0.999 - . logic_name=eponine scaffold_34 . exon 59432 59504 . - . ID=Phyra78713.1;Parent=Phyra78713;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 ensembl protein_coding_gene 63442 63936 . - . ID=Phyra78715;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000015;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 63442 63936 . - . ID=Phyra78715;Parent=Phyra78715;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 63442 63936 . - 0 ID=Phyra78715;Parent=Phyra78715;rank=1 scaffold_34 . exon 63442 63936 . - . ID=Phyra78715.1;Parent=Phyra78715;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 61432 62778 . - . ID=Phyra95205;biotype=protein_coding;external_name=C_scaffold_34000005;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 61432 62778 . - . ID=Phyra95205;Parent=Phyra95205;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 61432 61768 . - 0 ID=Phyra95205;Parent=Phyra95205;rank=3 scaffold_34 . exon 61432 61768 . - . ID=Phyra95205.3;Parent=Phyra95205;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 61880 62652 . - 0 ID=Phyra95205;Parent=Phyra95205;rank=2 scaffold_34 . exon 61880 62652 . - . ID=Phyra95205.2;Parent=Phyra95205;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_34 . CDS 62701 62778 . - 0 ID=Phyra95205;Parent=Phyra95205;rank=1 scaffold_34 . exon 62701 62778 . - . ID=Phyra95205.1;Parent=Phyra95205;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 67655 69085 . - . ID=Phyra95206;biotype=protein_coding;external_name=C_scaffold_34000006;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 67655 69085 . - . ID=Phyra95206;Parent=Phyra95206;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 67655 68362 . - 0 ID=Phyra95206;Parent=Phyra95206;rank=3 scaffold_34 . exon 67655 68362 . - . ID=Phyra95206.3;Parent=Phyra95206;constitutive=1;rank=3 scaffold_34 . CDS 68399 68774 . - 0 ID=Phyra95206;Parent=Phyra95206;rank=2 scaffold_34 . exon 68399 68774 . - . ID=Phyra95206.2;Parent=Phyra95206;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 69060 69085 . - 0 ID=Phyra95206;Parent=Phyra95206;rank=1 scaffold_34 ensembl protein_coding_gene 69421 71448 . - . ID=Phyra47657;biotype=protein_coding;external_name=gwEuk.34.36.1;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 69421 71448 . - . ID=Phyra47657;Parent=Phyra47657;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 69421 71448 . - 0 ID=Phyra47657;Parent=Phyra47657;rank=1 scaffold_34 . exon 69421 71448 . - . ID=Phyra47657.1;Parent=Phyra47657;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 75422 76778 . + . ID=Phyra71647;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_34000001;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 75422 76778 . + . ID=Phyra71647;Parent=Phyra71647;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 75422 75589 . + 0 ID=Phyra71647;Parent=Phyra71647;rank=1 scaffold_34 . exon 75422 75589 . + . ID=Phyra71647.1;Parent=Phyra71647;constitutive=1;rank=1 scaffold_34 . CDS 75681 76778 . + 0 ID=Phyra71647;Parent=Phyra71647;rank=2 scaffold_34 . exon 75681 76778 . + . ID=Phyra71647.2;Parent=Phyra71647;constitutive=1;rank=2 scaffold_34 ensembl protein_coding_gene 73148 75295 . - . ID=Phyra78717;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000017;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 73148 75295 . - . ID=Phyra78717;Parent=Phyra78717;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 73148 75295 . - 0 ID=Phyra78717;Parent=Phyra78717;rank=1 scaffold_34 . exon 73148 75295 . - . ID=Phyra78717.1;Parent=Phyra78717;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 77137 79757 . - . ID=Phyra78719;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000019;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 77137 79757 . - . ID=Phyra78719;Parent=Phyra78719;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 77137 78361 . - 0 ID=Phyra78719;Parent=Phyra78719;rank=2 scaffold_34 . exon 77137 78361 . - . ID=Phyra78719.2;Parent=Phyra78719;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 78844 79757 . - 0 ID=Phyra78719;Parent=Phyra78719;rank=1 scaffold_34 . exon 69060 69085 . - . ID=Phyra95206.1;Parent=Phyra95206;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . biological_region 82952 82957 0.999 + . logic_name=eponine scaffold_34 . biological_region 83057 83058 0.999 - . logic_name=eponine scaffold_34 . repeat_region 83330 83371 . ? . description=trf scaffold_34 ensembl protein_coding_gene 85964 87229 . + . ID=Phyra71648;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_34000002;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 85964 87229 . + . ID=Phyra71648;Parent=Phyra71648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 85964 86033 . + 0 ID=Phyra71648;Parent=Phyra71648;rank=1 scaffold_34 . exon 85964 86033 . + . ID=Phyra71648.1;Parent=Phyra71648;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 86271 87229 . + 0 ID=Phyra71648;Parent=Phyra71648;rank=2 scaffold_34 . exon 86271 87229 . + . ID=Phyra71648.2;Parent=Phyra71648;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . exon 78844 79757 . - . ID=Phyra78719.1;Parent=Phyra78719;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 ensembl protein_coding_gene 80332 81967 . + . ID=Phyra78720;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000020;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 80332 81967 . + . ID=Phyra78720;Parent=Phyra78720;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 80332 80408 . + 0 ID=Phyra78720;Parent=Phyra78720;rank=1 scaffold_34 . exon 80332 80408 . + . ID=Phyra78720.1;Parent=Phyra78720;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 80494 81967 . + 0 ID=Phyra78720;Parent=Phyra78720;rank=2 scaffold_34 . exon 80494 81967 . + . ID=Phyra78720.2;Parent=Phyra78720;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 ensembl protein_coding_gene 82443 83309 . + . ID=Phyra95210;biotype=protein_coding;external_name=C_scaffold_34000010;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 82443 83309 . + . ID=Phyra95210;Parent=Phyra95210;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 82443 82546 . + 0 ID=Phyra95210;Parent=Phyra95210;rank=1 scaffold_34 . exon 82443 82546 . + . ID=Phyra95210.1;Parent=Phyra95210;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 82709 83309 . + 0 ID=Phyra95210;Parent=Phyra95210;rank=2 scaffold_34 . exon 82709 83309 . + . ID=Phyra95210.2;Parent=Phyra95210;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 . repeat_region 90876 90883 . ? . description=dust scaffold_34 . repeat_region 95053 95060 . ? . description=dust scaffold_34 ensembl protein_coding_gene 89974 91761 . + . ID=Phyra78723;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000023;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 89974 91761 . + . ID=Phyra78723;Parent=Phyra78723;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 89974 90126 . + 0 ID=Phyra78723;Parent=Phyra78723;rank=1 scaffold_34 . exon 89974 90126 . + . ID=Phyra78723.1;Parent=Phyra78723;constitutive=1;rank=1 scaffold_34 . CDS 90267 90617 . + 0 ID=Phyra78723;Parent=Phyra78723;rank=2 scaffold_34 . exon 90267 90617 . + . ID=Phyra78723.2;Parent=Phyra78723;constitutive=1;rank=2 scaffold_34 . CDS 90693 90839 . + 0 ID=Phyra78723;Parent=Phyra78723;rank=3 scaffold_34 . exon 90693 90839 . + . ID=Phyra78723.3;Parent=Phyra78723;constitutive=1;rank=3 scaffold_34 . CDS 90914 91096 . + 0 ID=Phyra78723;Parent=Phyra78723;rank=4 scaffold_34 . exon 90914 91096 . + . ID=Phyra78723.4;Parent=Phyra78723;constitutive=1;rank=4 scaffold_34 . CDS 91573 91761 . + 0 ID=Phyra78723;Parent=Phyra78723;rank=5 scaffold_34 . exon 91573 91761 . + . ID=Phyra78723.5;Parent=Phyra78723;constitutive=1;rank=5 scaffold_34 ensembl protein_coding_gene 92132 93161 . - . ID=Phyra78724;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000024;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 92132 93161 . - . ID=Phyra78724;Parent=Phyra78724;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 92132 92142 . - 0 ID=Phyra78724;Parent=Phyra78724;rank=3 scaffold_34 . exon 92132 92142 . - . ID=Phyra78724.3;Parent=Phyra78724;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 92236 92991 . - 0 ID=Phyra78724;Parent=Phyra78724;rank=2 scaffold_34 . exon 92236 92991 . - . ID=Phyra78724.2;Parent=Phyra78724;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 93059 93161 . - 0 ID=Phyra78724;Parent=Phyra78724;rank=1 scaffold_34 . exon 93059 93161 . - . ID=Phyra78724.1;Parent=Phyra78724;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 ensembl protein_coding_gene 93429 94106 . + . ID=Phyra78725;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000025;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 93429 94106 . + . ID=Phyra78725;Parent=Phyra78725;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 93429 93469 . + 0 ID=Phyra78725;Parent=Phyra78725;rank=1 scaffold_34 . exon 93429 93469 . + . ID=Phyra78725.1;Parent=Phyra78725;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 93650 93840 . + 0 ID=Phyra78725;Parent=Phyra78725;rank=2 scaffold_34 . exon 93650 93840 . + . ID=Phyra78725.2;Parent=Phyra78725;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 93910 94106 . + 0 ID=Phyra78725;Parent=Phyra78725;rank=3 scaffold_34 . exon 93910 94106 . + . ID=Phyra78725.3;Parent=Phyra78725;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 ensembl protein_coding_gene 94846 95373 . - . ID=Phyra78726;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000026;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 94846 95373 . - . ID=Phyra78726;Parent=Phyra78726;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 94846 94857 . - 0 ID=Phyra78726;Parent=Phyra78726;rank=2 scaffold_34 . exon 94846 94857 . - . ID=Phyra78726.2;Parent=Phyra78726;constitutive=1;rank=2 scaffold_34 . CDS 95077 95373 . - 0 ID=Phyra78726;Parent=Phyra78726;rank=1 scaffold_34 . exon 95077 95373 . - . ID=Phyra78726.1;Parent=Phyra78726;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 97075 101528 . - . ID=Phyra95213;biotype=protein_coding;external_name=C_scaffold_34000013;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 97075 101528 . - . ID=Phyra95213;Parent=Phyra95213;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 97075 97120 . - 0 ID=Phyra95213;Parent=Phyra95213;rank=8 scaffold_34 . exon 97075 97120 . - . ID=Phyra95213.8;Parent=Phyra95213;constitutive=1;ensembl_phase=2;rank=8 scaffold_34 . CDS 97199 98453 . - 0 ID=Phyra95213;Parent=Phyra95213;rank=7 scaffold_34 . exon 97199 98453 . - . ID=Phyra95213.7;Parent=Phyra95213;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_34 . CDS 98844 99029 . - 0 ID=Phyra95213;Parent=Phyra95213;rank=6 scaffold_34 . CDS 99069 99758 . - 0 ID=Phyra95213;Parent=Phyra95213;rank=5 scaffold_34 . CDS 99792 100024 . - 0 ID=Phyra95213;Parent=Phyra95213;rank=4 scaffold_34 . CDS 100249 100447 . - 0 ID=Phyra95213;Parent=Phyra95213;rank=3 scaffold_34 . CDS 100547 101261 . - 0 ID=Phyra95213;Parent=Phyra95213;rank=2 scaffold_34 . CDS 101319 101528 . - 0 ID=Phyra95213;Parent=Phyra95213;rank=1 scaffold_34 . biological_region 101464 101466 0.999 - . logic_name=eponine scaffold_34 . repeat_region 101696 101743 . ? . description=trf scaffold_34 . biological_region 104892 104895 0.999 - . logic_name=eponine scaffold_34 . biological_region 104931 104936 0.999 - . logic_name=eponine scaffold_34 . biological_region 104956 104960 0.999 - . logic_name=eponine scaffold_34 . biological_region 104989 104992 0.999 + . logic_name=eponine scaffold_34 . biological_region 105011 105014 0.999 + . logic_name=eponine scaffold_34 . biological_region 105757 105757 0.999 + . logic_name=eponine scaffold_34 ensembl protein_coding_gene 101779 103083 . - . ID=Phyra78729;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000029;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 101779 103083 . - . ID=Phyra78729;Parent=Phyra78729;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 101779 103083 . - 0 ID=Phyra78729;Parent=Phyra78729;rank=1 scaffold_34 . exon 101779 103083 . - . ID=Phyra78729.1;Parent=Phyra78729;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 104858 106675 . + . ID=Phyra78730;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000030;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 104858 106675 . + . ID=Phyra78730;Parent=Phyra78730;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 104858 106675 . + 0 ID=Phyra78730;Parent=Phyra78730;rank=1 scaffold_34 . exon 104858 106675 . + . ID=Phyra78730.1;Parent=Phyra78730;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 107180 107893 . - . ID=Phyra78731;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000031;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 107180 107893 . - . ID=Phyra78731;Parent=Phyra78731;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 107180 107893 . - 0 ID=Phyra78731;Parent=Phyra78731;rank=1 scaffold_34 . exon 107180 107893 . - . ID=Phyra78731.1;Parent=Phyra78731;constitutive=1;rank=1 scaffold_34 . exon 98844 99029 . - . ID=Phyra95213.6;Parent=Phyra95213;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_34 . exon 99069 99758 . - . ID=Phyra95213.5;Parent=Phyra95213;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_34 . exon 99792 100024 . - . ID=Phyra95213.4;Parent=Phyra95213;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_34 . exon 100249 100447 . - . ID=Phyra95213.3;Parent=Phyra95213;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_34 . exon 100547 101261 . - . ID=Phyra95213.2;Parent=Phyra95213;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_34 . exon 101319 101528 . - . ID=Phyra95213.1;Parent=Phyra95213;constitutive=1;rank=1 scaffold_34 . repeat_region 109157 109167 . ? . description=dust scaffold_34 ensembl protein_coding_gene 110350 111306 . - . ID=Phyra78732;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000032;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 110350 111306 . - . ID=Phyra78732;Parent=Phyra78732;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 110350 111306 . - 0 ID=Phyra78732;Parent=Phyra78732;rank=1 scaffold_34 . exon 110350 111306 . - . ID=Phyra78732.1;Parent=Phyra78732;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 111945 112904 . - . ID=Phyra78733;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000033;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 111945 112904 . - . ID=Phyra78733;Parent=Phyra78733;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 111945 112904 . - 0 ID=Phyra78733;Parent=Phyra78733;rank=1 scaffold_34 . exon 111945 112904 . - . ID=Phyra78733.1;Parent=Phyra78733;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 114097 115133 . + . ID=Phyra78734;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000034;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 114097 115133 . + . ID=Phyra78734;Parent=Phyra78734;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 114097 114117 . + 0 ID=Phyra78734;Parent=Phyra78734;rank=1 scaffold_34 . exon 114097 114117 . + . ID=Phyra78734.1;Parent=Phyra78734;constitutive=1;rank=1 scaffold_34 . CDS 114144 115133 . + 0 ID=Phyra78734;Parent=Phyra78734;rank=2 scaffold_34 . exon 114144 115133 . + . ID=Phyra78734.2;Parent=Phyra78734;constitutive=1;rank=2 scaffold_34 ensembl protein_coding_gene 115745 116701 . + . ID=Phyra78735;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000035;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 115745 116701 . + . ID=Phyra78735;Parent=Phyra78735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 115745 116701 . + 0 ID=Phyra78735;Parent=Phyra78735;rank=1 scaffold_34 . exon 115745 116701 . + . ID=Phyra78735.1;Parent=Phyra78735;constitutive=1;rank=1 scaffold_34 . biological_region 120571 120571 0.999 - . logic_name=eponine scaffold_34 . repeat_region 122992 123011 . ? . description=trf scaffold_34 . biological_region 125485 125485 0.999 + . logic_name=eponine scaffold_34 . repeat_region 125702 125771 . ? . description=trf scaffold_34 ensembl protein_coding_gene 117694 118167 . - . ID=Phyra78736;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000036;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 117694 118167 . - . ID=Phyra78736;Parent=Phyra78736;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 117694 118167 . - 0 ID=Phyra78736;Parent=Phyra78736;rank=1 scaffold_34 . exon 117694 118167 . - . ID=Phyra78736.1;Parent=Phyra78736;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 118710 120137 . + . ID=Phyra78737;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000037;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 118710 120137 . + . ID=Phyra78737;Parent=Phyra78737;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 118710 120137 . + 0 ID=Phyra78737;Parent=Phyra78737;rank=1 scaffold_34 . exon 118710 120137 . + . ID=Phyra78737.1;Parent=Phyra78737;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 121159 122700 . + . ID=Phyra78738;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000038;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 121159 122700 . + . ID=Phyra78738;Parent=Phyra78738;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 121159 122700 . + 0 ID=Phyra78738;Parent=Phyra78738;rank=1 scaffold_34 . exon 121159 122700 . + . ID=Phyra78738.1;Parent=Phyra78738;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 123153 124867 . - . ID=Phyra78739;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000039;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 123153 124867 . - . ID=Phyra78739;Parent=Phyra78739;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 123153 123170 . - 0 ID=Phyra78739;Parent=Phyra78739;rank=7 scaffold_34 . exon 123153 123170 . - . ID=Phyra78739.7;Parent=Phyra78739;constitutive=1;rank=7 scaffold_34 . CDS 123215 123280 . - 0 ID=Phyra78739;Parent=Phyra78739;rank=6 scaffold_34 . exon 123215 123280 . - . ID=Phyra78739.6;Parent=Phyra78739;constitutive=1;rank=6 scaffold_34 . CDS 123308 123427 . - 0 ID=Phyra78739;Parent=Phyra78739;rank=5 scaffold_34 . exon 123308 123427 . - . ID=Phyra78739.5;Parent=Phyra78739;constitutive=1;rank=5 scaffold_34 . CDS 123500 123835 . - 0 ID=Phyra78739;Parent=Phyra78739;rank=4 scaffold_34 . exon 123500 123835 . - . ID=Phyra78739.4;Parent=Phyra78739;constitutive=1;rank=4 scaffold_34 . CDS 123912 124305 . - 0 ID=Phyra78739;Parent=Phyra78739;rank=3 scaffold_34 . exon 123912 124305 . - . ID=Phyra78739.3;Parent=Phyra78739;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 124380 124639 . - 0 ID=Phyra78739;Parent=Phyra78739;rank=2 scaffold_34 . exon 124380 124639 . - . ID=Phyra78739.2;Parent=Phyra78739;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_34 . CDS 124676 124867 . - 0 ID=Phyra78739;Parent=Phyra78739;rank=1 scaffold_34 . exon 124676 124867 . - . ID=Phyra78739.1;Parent=Phyra78739;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 125216 128044 . + . ID=Phyra78740;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000040;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 125216 128044 . + . ID=Phyra78740;Parent=Phyra78740;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 125216 128044 . + 0 ID=Phyra78740;Parent=Phyra78740;rank=1 scaffold_34 . exon 125216 128044 . + . ID=Phyra78740.1;Parent=Phyra78740;constitutive=1;rank=1 scaffold_34 . repeat_region 128101 128110 . ? . description=dust scaffold_34 . repeat_region 129296 129307 . ? . description=dust scaffold_34 . repeat_region 130591 130598 . ? . description=dust scaffold_34 . repeat_region 132399 132411 . ? . description=dust scaffold_34 . repeat_region 132592 133612 . ? . description=dust scaffold_34 ensembl protein_coding_gene 129410 130042 . - . ID=Phyra78741;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000041;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 129410 130042 . - . ID=Phyra78741;Parent=Phyra78741;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 129410 130042 . - 0 ID=Phyra78741;Parent=Phyra78741;rank=1 scaffold_34 . exon 129410 130042 . - . ID=Phyra78741.1;Parent=Phyra78741;constitutive=1;rank=1 scaffold_34 . repeat_region 137300 137583 . + . description=Gypsy-1-I_PI-int scaffold_34 . repeat_region 139505 139532 . ? . description=trf scaffold_34 . repeat_region 142014 142037 . ? . description=trf scaffold_34 ensembl protein_coding_gene 145174 146379 . + . ID=Phyra78742;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000042;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 145174 146379 . + . ID=Phyra78742;Parent=Phyra78742;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 145174 146379 . + 0 ID=Phyra78742;Parent=Phyra78742;rank=1 scaffold_34 . exon 145174 146379 . + . ID=Phyra78742.1;Parent=Phyra78742;constitutive=1;rank=1 scaffold_34 . repeat_region 151595 151627 . ? . description=dust scaffold_34 . repeat_region 152087 168306 . ? . description=dust scaffold_34 ensembl protein_coding_gene 147557 149461 . + . ID=Phyra78743;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000043;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 147557 149461 . + . ID=Phyra78743;Parent=Phyra78743;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 147557 149461 . + 0 ID=Phyra78743;Parent=Phyra78743;rank=1 scaffold_34 . exon 147557 149461 . + . ID=Phyra78743.1;Parent=Phyra78743;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 151636 152027 . + . ID=Phyra78744;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000044;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 151636 152027 . + . ID=Phyra78744;Parent=Phyra78744;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 151636 151954 . + 0 ID=Phyra78744;Parent=Phyra78744;rank=1 scaffold_34 . exon 151636 151954 . + . ID=Phyra78744.1;Parent=Phyra78744;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 152008 152027 . + 0 ID=Phyra78744;Parent=Phyra78744;rank=2 scaffold_34 . exon 152008 152027 . + . ID=Phyra78744.2;Parent=Phyra78744;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . repeat_region 152087 168306 . ? . description=dust scaffold_34 . repeat_region 170857 170890 . ? . description=trf scaffold_34 . biological_region 170990 170992 0.999 - . logic_name=eponine scaffold_34 . repeat_region 174843 174850 . ? . description=dust scaffold_34 ensembl protein_coding_gene 169805 170233 . + . ID=Phyra78745;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000045;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 169805 170233 . + . ID=Phyra78745;Parent=Phyra78745;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 169805 169832 . + 0 ID=Phyra78745;Parent=Phyra78745;rank=1 scaffold_34 . exon 169805 169832 . + . ID=Phyra78745.1;Parent=Phyra78745;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 169876 169906 . + 0 ID=Phyra78745;Parent=Phyra78745;rank=2 scaffold_34 . exon 169876 169906 . + . ID=Phyra78745.2;Parent=Phyra78745;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_34 . CDS 169978 170233 . + 0 ID=Phyra78745;Parent=Phyra78745;rank=3 scaffold_34 . exon 169978 170233 . + . ID=Phyra78745.3;Parent=Phyra78745;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 ensembl protein_coding_gene 170852 171785 . + . ID=Phyra78746;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000046;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 170852 171785 . + . ID=Phyra78746;Parent=Phyra78746;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 170852 171170 . + 0 ID=Phyra78746;Parent=Phyra78746;rank=1 scaffold_34 . exon 170852 171170 . + . ID=Phyra78746.1;Parent=Phyra78746;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 171340 171631 . + 0 ID=Phyra78746;Parent=Phyra78746;rank=2 scaffold_34 . exon 171340 171631 . + . ID=Phyra78746.2;Parent=Phyra78746;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_34 . CDS 171698 171785 . + 0 ID=Phyra78746;Parent=Phyra78746;rank=3 scaffold_34 . exon 171698 171785 . + . ID=Phyra78746.3;Parent=Phyra78746;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 ensembl protein_coding_gene 172041 172790 . - . ID=Phyra78747;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000047;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 172041 172790 . - . ID=Phyra78747;Parent=Phyra78747;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 172041 172124 . - 0 ID=Phyra78747;Parent=Phyra78747;rank=4 scaffold_34 . exon 172041 172124 . - . ID=Phyra78747.4;Parent=Phyra78747;constitutive=1;rank=4 scaffold_34 . CDS 172152 172535 . - 0 ID=Phyra78747;Parent=Phyra78747;rank=3 scaffold_34 . exon 172152 172535 . - . ID=Phyra78747.3;Parent=Phyra78747;constitutive=1;rank=3 scaffold_34 . CDS 172566 172625 . - 0 ID=Phyra78747;Parent=Phyra78747;rank=2 scaffold_34 . exon 172566 172625 . - . ID=Phyra78747.2;Parent=Phyra78747;constitutive=1;rank=2 scaffold_34 . CDS 172737 172790 . - 0 ID=Phyra78747;Parent=Phyra78747;rank=1 scaffold_34 . exon 172737 172790 . - . ID=Phyra78747.1;Parent=Phyra78747;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 175339 176220 . + . ID=Phyra78748;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000048;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 175339 176220 . + . ID=Phyra78748;Parent=Phyra78748;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 175339 176220 . + 0 ID=Phyra78748;Parent=Phyra78748;rank=1 scaffold_34 . exon 175339 176220 . + . ID=Phyra78748.1;Parent=Phyra78748;constitutive=1;rank=1 scaffold_34 ensembl pseudogene 183044 187171 . - . ID=Phyra47677;biotype=pseudogene;external_name=gwEuk.34.56.1;logic_name=jgi_phyra1 scaffold_34 ensembl pseudogene 183044 187171 . - . ID=Phyra47677;Parent=Phyra47677;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_34 . exon 183044 183892 . - . ID=Phyra47677.4;Parent=Phyra47677;constitutive=1;rank=4 scaffold_34 . exon 183939 184093 . - . ID=Phyra47677.3;Parent=Phyra47677;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . repeat_region 187535 187814 . ? . description=trf scaffold_34 . biological_region 187823 187826 0.999 + . logic_name=eponine scaffold_34 . repeat_region 188372 188383 . ? . description=dust scaffold_34 . biological_region 188969 188971 0.999 + . logic_name=eponine scaffold_34 . repeat_region 189183 189281 . ? . description=dust scaffold_34 . repeat_region 189282 189302 . ? . description=trf scaffold_34 . repeat_region 189285 189302 . ? . description=dust scaffold_34 . repeat_region 189380 189389 . ? . description=dust scaffold_34 . repeat_region 189508 189538 . ? . description=dust scaffold_34 . repeat_region 190408 191406 . ? . description=dust scaffold_34 . repeat_region 191450 191566 . + . description=GypsyPi-1c_I-int scaffold_34 . repeat_region 192171 192269 . + . description=GypsyPi-1c_I-int scaffold_34 . repeat_region 192423 193541 . ? . description=dust scaffold_34 . repeat_region 193542 194760 . + . description=GypsyPi-1c_I-int scaffold_34 . repeat_region 194761 195381 . ? . description=dust scaffold_34 . repeat_region 195388 195678 . + . description=GypsyPi-1c_I-int scaffold_34 . repeat_region 195931 196209 . + . description=GypsyPi-1c_I-int scaffold_34 . exon 186484 186640 . - . ID=Phyra47677.2;Parent=Phyra47677;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_34 . exon 186761 187171 . - . ID=Phyra47677.1;Parent=Phyra47677;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 193788 194201 . + . ID=Phyra78749;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000049;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 193788 194201 . + . ID=Phyra78749;Parent=Phyra78749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 193788 194201 . + 0 ID=Phyra78749;Parent=Phyra78749;rank=1 scaffold_34 . exon 193788 194201 . + . ID=Phyra78749.1;Parent=Phyra78749;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 197075 197752 . - . ID=Phyra78750;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000050;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 197075 197752 . - . ID=Phyra78750;Parent=Phyra78750;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 197075 197752 . - 0 ID=Phyra78750;Parent=Phyra78750;rank=1 scaffold_34 . exon 197075 197752 . - . ID=Phyra78750.1;Parent=Phyra78750;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 200319 202268 . + . ID=Phyra78751;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000051;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 200319 202268 . + . ID=Phyra78751;Parent=Phyra78751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 200319 202268 . + 0 ID=Phyra78751;Parent=Phyra78751;rank=1 scaffold_34 . exon 200319 202268 . + . ID=Phyra78751.1;Parent=Phyra78751;constitutive=1;rank=1 scaffold_34 . repeat_region 207662 207675 . ? . description=dust scaffold_34 . biological_region 208819 208820 0.999 - . logic_name=eponine scaffold_34 . repeat_region 209725 209771 . ? . description=trf scaffold_34 . repeat_region 209743 209781 . ? . description=trf scaffold_34 . repeat_region 209744 209781 . ? . description=trf scaffold_34 . repeat_region 209744 209781 . ? . description=trf scaffold_34 . repeat_region 210166 210173 . ? . description=dust scaffold_34 . repeat_region 212649 212672 . ? . description=dust scaffold_34 . repeat_region 212791 212798 . ? . description=dust scaffold_34 . repeat_region 215107 215156 . ? . description=dust scaffold_34 . repeat_region 215553 215562 . ? . description=dust scaffold_34 ensembl pseudogene 210415 210815 . + . ID=Phyra47622;biotype=pseudogene;external_name=gwEuk.34.1.1;logic_name=jgi_phyra1 scaffold_34 ensembl pseudogene 210415 210815 . + . ID=Phyra47622;Parent=Phyra47622;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_34 . exon 210415 210815 . + . ID=Phyra47622.1;Parent=Phyra47622;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . repeat_region 218812 223632 . + . description=Polinton-1_PI scaffold_34 . repeat_region 223622 227669 . + . description=Polinton-1_PI scaffold_34 ensembl protein_coding_gene 216875 218095 . + . ID=Phyra78752;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000052;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 216875 218095 . + . ID=Phyra78752;Parent=Phyra78752;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 216875 218095 . + 0 ID=Phyra78752;Parent=Phyra78752;rank=1 scaffold_34 . exon 216875 218095 . + . ID=Phyra78752.1;Parent=Phyra78752;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 220687 222293 . + . ID=Phyra78753;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000053;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 220687 222293 . + . ID=Phyra78753;Parent=Phyra78753;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 220687 221338 . + 0 ID=Phyra78753;Parent=Phyra78753;rank=1 scaffold_34 . exon 220687 221338 . + . ID=Phyra78753.1;Parent=Phyra78753;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 221591 222133 . + 0 ID=Phyra78753;Parent=Phyra78753;rank=2 scaffold_34 . exon 221591 222133 . + . ID=Phyra78753.2;Parent=Phyra78753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 222271 222293 . + 0 ID=Phyra78753;Parent=Phyra78753;rank=3 scaffold_34 . exon 222271 222293 . + . ID=Phyra78753.3;Parent=Phyra78753;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . repeat_region 226372 226405 . ? . description=trf scaffold_34 . repeat_region 230709 234019 . ? . description=dust scaffold_34 ensembl protein_coding_gene 236890 237843 . - . ID=Phyra78754;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000054;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 236890 237843 . - . ID=Phyra78754;Parent=Phyra78754;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 236890 237843 . - 0 ID=Phyra78754;Parent=Phyra78754;rank=1 scaffold_34 . exon 236890 237843 . - . ID=Phyra78754.1;Parent=Phyra78754;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 238469 239021 . + . ID=Phyra78755;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000055;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 238469 239021 . + . ID=Phyra78755;Parent=Phyra78755;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 238469 238959 . + 0 ID=Phyra78755;Parent=Phyra78755;rank=1 scaffold_34 . exon 238469 238959 . + . ID=Phyra78755.1;Parent=Phyra78755;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 238997 239021 . + 0 ID=Phyra78755;Parent=Phyra78755;rank=2 scaffold_34 . exon 238997 239021 . + . ID=Phyra78755.2;Parent=Phyra78755;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 ensembl protein_coding_gene 240091 241377 . - . ID=Phyra78756;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000056;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 240091 241377 . - . ID=Phyra78756;Parent=Phyra78756;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 240091 241377 . - 0 ID=Phyra78756;Parent=Phyra78756;rank=1 scaffold_34 . exon 240091 241377 . - . ID=Phyra78756.1;Parent=Phyra78756;constitutive=1;rank=1 scaffold_34 ensembl pseudogene 250287 250687 . + . ID=Phyra47624;biotype=pseudogene;external_name=gwEuk.34.3.1;logic_name=jgi_phyra1 scaffold_34 ensembl pseudogene 250287 250687 . + . ID=Phyra47624;Parent=Phyra47624;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_34 . exon 250287 250687 . + . ID=Phyra47624.1;Parent=Phyra47624;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 ensembl protein_coding_gene 246060 247349 . + . ID=Phyra78757;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000057;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 246060 247349 . + . ID=Phyra78757;Parent=Phyra78757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 246060 247349 . + 0 ID=Phyra78757;Parent=Phyra78757;rank=1 scaffold_34 . exon 246060 247349 . + . ID=Phyra78757.1;Parent=Phyra78757;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 251866 253020 . + . ID=Phyra78758;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000058;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 251866 253020 . + . ID=Phyra78758;Parent=Phyra78758;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 251866 253020 . + 0 ID=Phyra78758;Parent=Phyra78758;rank=1 scaffold_34 . exon 251866 253020 . + . ID=Phyra78758.1;Parent=Phyra78758;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 253703 254968 . + . ID=Phyra78759;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000059;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 253703 254968 . + . ID=Phyra78759;Parent=Phyra78759;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 253703 254968 . + 0 ID=Phyra78759;Parent=Phyra78759;rank=1 scaffold_34 . exon 253703 254968 . + . ID=Phyra78759.1;Parent=Phyra78759;constitutive=1;rank=1 scaffold_34 . biological_region 255768 255772 0.999 + . logic_name=eponine scaffold_34 . biological_region 255860 255865 0.999 + . logic_name=eponine scaffold_34 . repeat_region 256455 256463 . ? . description=dust scaffold_34 . repeat_region 261551 261563 . ? . description=dust scaffold_34 . repeat_region 264033 264066 . ? . description=trf scaffold_34 . repeat_region 264473 264521 . ? . description=trf scaffold_34 . repeat_region 264593 264677 . ? . description=trf scaffold_34 ensembl protein_coding_gene 255282 255962 . - . ID=Phyra78760;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000060;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 255282 255962 . - . ID=Phyra78760;Parent=Phyra78760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 255282 255962 . - 0 ID=Phyra78760;Parent=Phyra78760;rank=1 scaffold_34 . exon 255282 255962 . - . ID=Phyra78760.1;Parent=Phyra78760;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 266558 267112 . + . ID=Phyra78761;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000061;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 266558 267112 . + . ID=Phyra78761;Parent=Phyra78761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 266558 267112 . + 0 ID=Phyra78761;Parent=Phyra78761;rank=1 scaffold_34 . exon 266558 267112 . + . ID=Phyra78761.1;Parent=Phyra78761;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 270067 270531 . + . ID=Phyra78762;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000062;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 270067 270531 . + . ID=Phyra78762;Parent=Phyra78762;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 270067 270531 . + 0 ID=Phyra78762;Parent=Phyra78762;rank=1 scaffold_34 . exon 270067 270531 . + . ID=Phyra78762.1;Parent=Phyra78762;constitutive=1;rank=1 scaffold_34 . repeat_region 277266 277291 . ? . description=trf scaffold_34 . repeat_region 280909 280948 . ? . description=trf scaffold_34 ensembl protein_coding_gene 284218 285170 . - . ID=Phyra78763;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000063;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 284218 285170 . - . ID=Phyra78763;Parent=Phyra78763;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 284218 284666 . - 0 ID=Phyra78763;Parent=Phyra78763;rank=4 scaffold_34 . exon 284218 284666 . - . ID=Phyra78763.4;Parent=Phyra78763;constitutive=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 284815 284856 . - 0 ID=Phyra78763;Parent=Phyra78763;rank=3 scaffold_34 . CDS 284936 285103 . - 0 ID=Phyra78763;Parent=Phyra78763;rank=2 scaffold_34 . CDS 285164 285170 . - 0 ID=Phyra78763;Parent=Phyra78763;rank=1 scaffold_34 . repeat_region 286098 286108 . ? . description=dust scaffold_34 . repeat_region 288855 288867 . ? . description=dust scaffold_34 . exon 284815 284856 . - . ID=Phyra78763.3;Parent=Phyra78763;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_34 . exon 284936 285103 . - . ID=Phyra78763.2;Parent=Phyra78763;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_34 . exon 285164 285170 . - . ID=Phyra78763.1;Parent=Phyra78763;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . biological_region 294374 294376 0.999 - . logic_name=eponine scaffold_34 . biological_region 296627 296628 0.999 - . logic_name=eponine scaffold_34 . biological_region 297199 297202 0.999 - . logic_name=eponine scaffold_34 . repeat_region 298334 298396 . ? . description=trf scaffold_34 ensembl protein_coding_gene 301639 302691 . + . ID=Phyra71649;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_34000003;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 301639 302691 . + . ID=Phyra71649;Parent=Phyra71649;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 301639 302691 . + 0 ID=Phyra71649;Parent=Phyra71649;rank=1 scaffold_34 . exon 301639 302691 . + . ID=Phyra71649.1;Parent=Phyra71649;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 294278 296972 . + . ID=Phyra78764;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000064;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 294278 296972 . + . ID=Phyra78764;Parent=Phyra78764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 294278 294778 . + 0 ID=Phyra78764;Parent=Phyra78764;rank=1 scaffold_34 . exon 294278 294778 . + . ID=Phyra78764.1;Parent=Phyra78764;constitutive=1;rank=1 scaffold_34 . CDS 294844 295143 . + 0 ID=Phyra78764;Parent=Phyra78764;rank=2 scaffold_34 . exon 294844 295143 . + . ID=Phyra78764.2;Parent=Phyra78764;constitutive=1;rank=2 scaffold_34 . CDS 295210 295629 . + 0 ID=Phyra78764;Parent=Phyra78764;rank=3 scaffold_34 . exon 295210 295629 . + . ID=Phyra78764.3;Parent=Phyra78764;constitutive=1;rank=3 scaffold_34 . CDS 295746 296972 . + 0 ID=Phyra78764;Parent=Phyra78764;rank=4 scaffold_34 . exon 295746 296972 . + . ID=Phyra78764.4;Parent=Phyra78764;constitutive=1;rank=4 scaffold_34 ensembl protein_coding_gene 297736 298281 . + . ID=Phyra78765;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000065;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 297736 298281 . + . ID=Phyra78765;Parent=Phyra78765;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 297736 298281 . + 0 ID=Phyra78765;Parent=Phyra78765;rank=1 scaffold_34 . exon 297736 298281 . + . ID=Phyra78765.1;Parent=Phyra78765;constitutive=1;rank=1 scaffold_34 . repeat_region 307842 307895 . ? . description=dust scaffold_34 . repeat_region 307964 307986 . ? . description=dust scaffold_34 . repeat_region 313666 313675 . ? . description=dust scaffold_34 ensembl protein_coding_gene 307248 308777 . + . ID=Phyra78767;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000067;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 307248 308777 . + . ID=Phyra78767;Parent=Phyra78767;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 307248 308777 . + 0 ID=Phyra78767;Parent=Phyra78767;rank=1 scaffold_34 . exon 307248 308777 . + . ID=Phyra78767.1;Parent=Phyra78767;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 313233 314549 . - . ID=Phyra78768;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000068;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 313233 314549 . - . ID=Phyra78768;Parent=Phyra78768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 313233 313661 . - 0 ID=Phyra78768;Parent=Phyra78768;rank=2 scaffold_34 . exon 313233 313661 . - . ID=Phyra78768.2;Parent=Phyra78768;constitutive=1;rank=2 scaffold_34 . CDS 313728 314549 . - 0 ID=Phyra78768;Parent=Phyra78768;rank=1 scaffold_34 . exon 313728 314549 . - . ID=Phyra78768.1;Parent=Phyra78768;constitutive=1;rank=1 scaffold_34 . biological_region 321993 321996 0.999 - . logic_name=eponine scaffold_34 ensembl protein_coding_gene 314862 316252 . - . ID=Phyra78769;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000069;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 314862 316252 . - . ID=Phyra78769;Parent=Phyra78769;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 314862 315266 . - 0 ID=Phyra78769;Parent=Phyra78769;rank=3 scaffold_34 . exon 314862 315266 . - . ID=Phyra78769.3;Parent=Phyra78769;constitutive=1;rank=3 scaffold_34 . CDS 315382 315639 . - 0 ID=Phyra78769;Parent=Phyra78769;rank=2 scaffold_34 . exon 315382 315639 . - . ID=Phyra78769.2;Parent=Phyra78769;constitutive=1;rank=2 scaffold_34 . CDS 315713 316252 . - 0 ID=Phyra78769;Parent=Phyra78769;rank=1 scaffold_34 . exon 315713 316252 . - . ID=Phyra78769.1;Parent=Phyra78769;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 316781 318182 . - . ID=Phyra78770;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000070;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 316781 318182 . - . ID=Phyra78770;Parent=Phyra78770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 316781 317212 . - 0 ID=Phyra78770;Parent=Phyra78770;rank=3 scaffold_34 . exon 316781 317212 . - . ID=Phyra78770.3;Parent=Phyra78770;constitutive=1;rank=3 scaffold_34 . CDS 317275 317586 . - 0 ID=Phyra78770;Parent=Phyra78770;rank=2 scaffold_34 . exon 317275 317586 . - . ID=Phyra78770.2;Parent=Phyra78770;constitutive=1;rank=2 scaffold_34 . CDS 317655 318182 . - 0 ID=Phyra78770;Parent=Phyra78770;rank=1 scaffold_34 . exon 317655 318182 . - . ID=Phyra78770.1;Parent=Phyra78770;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 318456 319172 . - . ID=Phyra78771;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000071;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 318456 319172 . - . ID=Phyra78771;Parent=Phyra78771;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 318456 319076 . - 0 ID=Phyra78771;Parent=Phyra78771;rank=2 scaffold_34 . exon 318456 319076 . - . ID=Phyra78771.2;Parent=Phyra78771;constitutive=1;rank=2 scaffold_34 . CDS 319170 319172 . - 0 ID=Phyra78771;Parent=Phyra78771;rank=1 scaffold_34 . exon 319170 319172 . - . ID=Phyra78771.1;Parent=Phyra78771;constitutive=1;rank=1 scaffold_34 . repeat_region 327827 327845 . ? . description=dust scaffold_34 . repeat_region 330446 330454 . ? . description=dust scaffold_34 . repeat_region 331265 331281 . ? . description=dust scaffold_34 ensembl protein_coding_gene 328721 329710 . - . ID=Phyra47630;biotype=protein_coding;external_name=gwEuk.34.9.1;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 328721 329710 . - . ID=Phyra47630;Parent=Phyra47630;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 328721 329710 . - 0 ID=Phyra47630;Parent=Phyra47630;rank=1 scaffold_34 . exon 328721 329710 . - . ID=Phyra47630.1;Parent=Phyra47630;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 325775 327005 . + . ID=Phyra78772;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000072;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 325775 327005 . + . ID=Phyra78772;Parent=Phyra78772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 325775 326386 . + 0 ID=Phyra78772;Parent=Phyra78772;rank=1 scaffold_34 . exon 325775 326386 . + . ID=Phyra78772.1;Parent=Phyra78772;constitutive=1;rank=1 scaffold_34 . CDS 326473 326757 . + 0 ID=Phyra78772;Parent=Phyra78772;rank=2 scaffold_34 . exon 326473 326757 . + . ID=Phyra78772.2;Parent=Phyra78772;constitutive=1;rank=2 scaffold_34 . CDS 326831 326956 . + 0 ID=Phyra78772;Parent=Phyra78772;rank=3 scaffold_34 . exon 326831 326956 . + . ID=Phyra78772.3;Parent=Phyra78772;constitutive=1;rank=3 scaffold_34 . CDS 327000 327005 . + 0 ID=Phyra78772;Parent=Phyra78772;rank=4 scaffold_34 . exon 327000 327005 . + . ID=Phyra78772.4;Parent=Phyra78772;constitutive=1;rank=4 scaffold_34 . biological_region 337159 337160 0.999 - . logic_name=eponine scaffold_34 . biological_region 337292 337294 0.999 - . logic_name=eponine scaffold_34 . repeat_region 338517 338546 . ? . description=trf scaffold_34 ensembl protein_coding_gene 337167 338216 . - . ID=Phyra78774;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000074;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 337167 338216 . - . ID=Phyra78774;Parent=Phyra78774;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 337167 338216 . - 0 ID=Phyra78774;Parent=Phyra78774;rank=1 scaffold_34 . exon 337167 338216 . - . ID=Phyra78774.1;Parent=Phyra78774;constitutive=1;rank=1 scaffold_34 . repeat_region 345137 345186 . ? . description=dust scaffold_34 . repeat_region 349108 349156 . ? . description=dust scaffold_34 . repeat_region 350723 350741 . ? . description=dust scaffold_34 ensembl protein_coding_gene 344475 345436 . + . ID=Phyra78775;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000075;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 344475 345436 . + . ID=Phyra78775;Parent=Phyra78775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 344475 344728 . + 0 ID=Phyra78775;Parent=Phyra78775;rank=1 scaffold_34 . exon 344475 344728 . + . ID=Phyra78775.1;Parent=Phyra78775;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 344751 345132 . + 0 ID=Phyra78775;Parent=Phyra78775;rank=2 scaffold_34 . exon 344751 345132 . + . ID=Phyra78775.2;Parent=Phyra78775;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 345218 345310 . + 0 ID=Phyra78775;Parent=Phyra78775;rank=3 scaffold_34 . exon 345218 345310 . + . ID=Phyra78775.3;Parent=Phyra78775;constitutive=1;rank=3 scaffold_34 . CDS 345395 345436 . + 0 ID=Phyra78775;Parent=Phyra78775;rank=4 scaffold_34 . exon 345395 345436 . + . ID=Phyra78775.4;Parent=Phyra78775;constitutive=1;rank=4 scaffold_34 ensembl protein_coding_gene 351292 352939 . - . ID=Phyra78776;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000076;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 351292 352939 . - . ID=Phyra78776;Parent=Phyra78776;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 351292 351297 . - 0 ID=Phyra78776;Parent=Phyra78776;rank=6 scaffold_34 . exon 351292 351297 . - . ID=Phyra78776.6;Parent=Phyra78776;constitutive=1;rank=6 scaffold_34 . CDS 351341 351453 . - 0 ID=Phyra78776;Parent=Phyra78776;rank=5 scaffold_34 . exon 351341 351453 . - . ID=Phyra78776.5;Parent=Phyra78776;constitutive=1;ensembl_phase=1;rank=5 scaffold_34 . CDS 351719 351766 . - 0 ID=Phyra78776;Parent=Phyra78776;rank=4 scaffold_34 . exon 351719 351766 . - . ID=Phyra78776.4;Parent=Phyra78776;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 351941 352444 . - 0 ID=Phyra78776;Parent=Phyra78776;rank=3 scaffold_34 . exon 351941 352444 . - . ID=Phyra78776.3;Parent=Phyra78776;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 352761 352783 . - 0 ID=Phyra78776;Parent=Phyra78776;rank=2 scaffold_34 . exon 352761 352783 . - . ID=Phyra78776.2;Parent=Phyra78776;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 352917 352939 . - 0 ID=Phyra78776;Parent=Phyra78776;rank=1 scaffold_34 . exon 352917 352939 . - . ID=Phyra78776.1;Parent=Phyra78776;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . biological_region 354048 354050 0.999 - . logic_name=eponine scaffold_34 ensembl pseudogene 353244 354234 . + . ID=Phyra47633;biotype=pseudogene;external_name=gwEuk.34.12.1;logic_name=jgi_phyra1 scaffold_34 ensembl pseudogene 353244 354234 . + . ID=Phyra47633;Parent=Phyra47633;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_34 . exon 353244 354234 . + . ID=Phyra47633.1;Parent=Phyra47633;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 ensembl protein_coding_gene 355826 356960 . - . ID=Phyra78778;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000078;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 355826 356960 . - . ID=Phyra78778;Parent=Phyra78778;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 355826 355831 . - 0 ID=Phyra78778;Parent=Phyra78778;rank=4 scaffold_34 . exon 355826 355831 . - . ID=Phyra78778.4;Parent=Phyra78778;constitutive=1;rank=4 scaffold_34 . CDS 355875 355994 . - 0 ID=Phyra78778;Parent=Phyra78778;rank=3 scaffold_34 . exon 355875 355994 . - . ID=Phyra78778.3;Parent=Phyra78778;constitutive=1;rank=3 scaffold_34 . CDS 356053 356340 . - 0 ID=Phyra78778;Parent=Phyra78778;rank=2 scaffold_34 . exon 356053 356340 . - . ID=Phyra78778.2;Parent=Phyra78778;constitutive=1;rank=2 scaffold_34 . CDS 356427 356960 . - 0 ID=Phyra78778;Parent=Phyra78778;rank=1 scaffold_34 . exon 356427 356960 . - . ID=Phyra78778.1;Parent=Phyra78778;constitutive=1;rank=1 scaffold_34 . repeat_region 366472 366487 . ? . description=dust scaffold_34 . repeat_region 367721 367764 . ? . description=trf scaffold_34 . repeat_region 367729 367773 . ? . description=trf scaffold_34 . repeat_region 369292 369316 . ? . description=trf scaffold_34 ensembl protein_coding_gene 370326 374734 . - . ID=Phyra78779;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000079;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 370326 374734 . - . ID=Phyra78779;Parent=Phyra78779;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 370326 370754 . - 0 ID=Phyra78779;Parent=Phyra78779;rank=7 scaffold_34 . exon 370326 370754 . - . ID=Phyra78779.7;Parent=Phyra78779;constitutive=1;rank=7 scaffold_34 . CDS 371248 371801 . - 0 ID=Phyra78779;Parent=Phyra78779;rank=6 scaffold_34 . exon 371248 371801 . - . ID=Phyra78779.6;Parent=Phyra78779;constitutive=1;ensembl_phase=1;rank=6 scaffold_34 . CDS 372057 372441 . - 0 ID=Phyra78779;Parent=Phyra78779;rank=5 scaffold_34 . exon 372057 372441 . - . ID=Phyra78779.5;Parent=Phyra78779;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_34 . CDS 372504 372818 . - 0 ID=Phyra78779;Parent=Phyra78779;rank=4 scaffold_34 . exon 372504 372818 . - . ID=Phyra78779.4;Parent=Phyra78779;constitutive=1;rank=4 scaffold_34 . CDS 372879 373400 . - 0 ID=Phyra78779;Parent=Phyra78779;rank=3 scaffold_34 . CDS 373550 373921 . - 0 ID=Phyra78779;Parent=Phyra78779;rank=2 scaffold_34 . CDS 373991 374734 . - 0 ID=Phyra78779;Parent=Phyra78779;rank=1 scaffold_34 . exon 372879 373400 . - . ID=Phyra78779.3;Parent=Phyra78779;constitutive=1;rank=3 scaffold_34 . exon 373550 373921 . - . ID=Phyra78779.2;Parent=Phyra78779;constitutive=1;rank=2 scaffold_34 . exon 373991 374734 . - . ID=Phyra78779.1;Parent=Phyra78779;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 375063 375563 . - . ID=Phyra78780;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000080;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 375063 375563 . - . ID=Phyra78780;Parent=Phyra78780;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 375063 375563 . - 0 ID=Phyra78780;Parent=Phyra78780;rank=1 scaffold_34 . exon 375063 375563 . - . ID=Phyra78780.1;Parent=Phyra78780;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 376578 377202 . - . ID=Phyra78781;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000081;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 376578 377202 . - . ID=Phyra78781;Parent=Phyra78781;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 376578 376628 . - 0 ID=Phyra78781;Parent=Phyra78781;rank=2 scaffold_34 . exon 376578 376628 . - . ID=Phyra78781.2;Parent=Phyra78781;constitutive=1;rank=2 scaffold_34 . CDS 376702 377202 . - 0 ID=Phyra78781;Parent=Phyra78781;rank=1 scaffold_34 . exon 376702 377202 . - . ID=Phyra78781.1;Parent=Phyra78781;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 377622 378846 . - . ID=Phyra78782;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000082;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 377622 378846 . - . ID=Phyra78782;Parent=Phyra78782;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 377622 378184 . - 0 ID=Phyra78782;Parent=Phyra78782;rank=2 scaffold_34 . exon 377622 378184 . - . ID=Phyra78782.2;Parent=Phyra78782;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 378357 378846 . - 0 ID=Phyra78782;Parent=Phyra78782;rank=1 scaffold_34 . exon 378357 378846 . - . ID=Phyra78782.1;Parent=Phyra78782;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 ensembl protein_coding_gene 381558 383094 . - . ID=Phyra78783;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000083;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 381558 383094 . - . ID=Phyra78783;Parent=Phyra78783;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 381558 381983 . - 0 ID=Phyra78783;Parent=Phyra78783;rank=3 scaffold_34 . exon 381558 381983 . - . ID=Phyra78783.3;Parent=Phyra78783;constitutive=1;rank=3 scaffold_34 . CDS 382059 382397 . - 0 ID=Phyra78783;Parent=Phyra78783;rank=2 scaffold_34 . exon 382059 382397 . - . ID=Phyra78783.2;Parent=Phyra78783;constitutive=1;rank=2 scaffold_34 . CDS 382465 383094 . - 0 ID=Phyra78783;Parent=Phyra78783;rank=1 scaffold_34 . biological_region 385043 385044 0.999 - . logic_name=eponine scaffold_34 . repeat_region 387059 387066 . ? . description=dust scaffold_34 . repeat_region 389592 389599 . ? . description=dust scaffold_34 . biological_region 390270 390276 0.999 + . logic_name=eponine scaffold_34 . exon 382465 383094 . - . ID=Phyra78783.1;Parent=Phyra78783;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 384038 385475 . - . ID=Phyra78784;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000084;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 384038 385475 . - . ID=Phyra78784;Parent=Phyra78784;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 384038 384442 . - 0 ID=Phyra78784;Parent=Phyra78784;rank=3 scaffold_34 . exon 384038 384442 . - . ID=Phyra78784.3;Parent=Phyra78784;constitutive=1;rank=3 scaffold_34 . CDS 384516 384632 . - 0 ID=Phyra78784;Parent=Phyra78784;rank=2 scaffold_34 . exon 384516 384632 . - . ID=Phyra78784.2;Parent=Phyra78784;constitutive=1;rank=2 scaffold_34 . CDS 384873 385475 . - 0 ID=Phyra78784;Parent=Phyra78784;rank=1 scaffold_34 . exon 384873 385475 . - . ID=Phyra78784.1;Parent=Phyra78784;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 387267 388676 . - . ID=Phyra78785;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000085;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 387267 388676 . - . ID=Phyra78785;Parent=Phyra78785;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 387267 387464 . - 0 ID=Phyra78785;Parent=Phyra78785;rank=3 scaffold_34 . exon 387267 387464 . - . ID=Phyra78785.3;Parent=Phyra78785;constitutive=1;rank=3 scaffold_34 . CDS 387772 388065 . - 0 ID=Phyra78785;Parent=Phyra78785;rank=2 scaffold_34 . exon 387772 388065 . - . ID=Phyra78785.2;Parent=Phyra78785;constitutive=1;rank=2 scaffold_34 . CDS 388122 388676 . - 0 ID=Phyra78785;Parent=Phyra78785;rank=1 scaffold_34 . exon 388122 388676 . - . ID=Phyra78785.1;Parent=Phyra78785;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 389148 390455 . - . ID=Phyra78786;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000086;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 389148 390455 . - . ID=Phyra78786;Parent=Phyra78786;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 389148 389243 . - 0 ID=Phyra78786;Parent=Phyra78786;rank=3 scaffold_34 . exon 389148 389243 . - . ID=Phyra78786.3;Parent=Phyra78786;constitutive=1;rank=3 scaffold_34 . CDS 389433 389555 . - 0 ID=Phyra78786;Parent=Phyra78786;rank=2 scaffold_34 . exon 389433 389555 . - . ID=Phyra78786.2;Parent=Phyra78786;constitutive=1;rank=2 scaffold_34 . CDS 389643 390455 . - 0 ID=Phyra78786;Parent=Phyra78786;rank=1 scaffold_34 . exon 389643 390455 . - . ID=Phyra78786.1;Parent=Phyra78786;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 390661 391968 . - . ID=Phyra78787;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000087;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 390661 391968 . - . ID=Phyra78787;Parent=Phyra78787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 390661 391968 . - 0 ID=Phyra78787;Parent=Phyra78787;rank=1 scaffold_34 . exon 390661 391968 . - . ID=Phyra78787.1;Parent=Phyra78787;constitutive=1;rank=1 scaffold_34 . repeat_region 400926 401102 . ? . description=trf scaffold_34 ensembl protein_coding_gene 393462 394719 . - . ID=Phyra47638;biotype=protein_coding;external_name=gwEuk.34.17.1;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 393462 394719 . - . ID=Phyra47638;Parent=Phyra47638;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 393462 393866 . - 0 ID=Phyra47638;Parent=Phyra47638;rank=4 scaffold_34 . exon 393462 393866 . - . ID=Phyra47638.4;Parent=Phyra47638;constitutive=1;rank=4 scaffold_34 . CDS 393934 394169 . - 0 ID=Phyra47638;Parent=Phyra47638;rank=3 scaffold_34 . exon 393934 394169 . - . ID=Phyra47638.3;Parent=Phyra47638;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 394238 394502 . - 0 ID=Phyra47638;Parent=Phyra47638;rank=2 scaffold_34 . exon 394238 394502 . - . ID=Phyra47638.2;Parent=Phyra47638;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_34 . CDS 394573 394719 . - 0 ID=Phyra47638;Parent=Phyra47638;rank=1 scaffold_34 . exon 394573 394719 . - . ID=Phyra47638.1;Parent=Phyra47638;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 395424 396092 . + . ID=Phyra78789;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000089;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 395424 396092 . + . ID=Phyra78789;Parent=Phyra78789;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 395424 396092 . + 0 ID=Phyra78789;Parent=Phyra78789;rank=1 scaffold_34 . exon 395424 396092 . + . ID=Phyra78789.1;Parent=Phyra78789;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 398115 398666 . + . ID=Phyra78790;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000090;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 398115 398666 . + . ID=Phyra78790;Parent=Phyra78790;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 398115 398666 . + 0 ID=Phyra78790;Parent=Phyra78790;rank=1 scaffold_34 . exon 398115 398666 . + . ID=Phyra78790.1;Parent=Phyra78790;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 399638 400129 . + . ID=Phyra78791;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000091;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 399638 400129 . + . ID=Phyra78791;Parent=Phyra78791;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 399638 400129 . + 0 ID=Phyra78791;Parent=Phyra78791;rank=1 scaffold_34 . exon 399638 400129 . + . ID=Phyra78791.1;Parent=Phyra78791;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 400587 401294 . + . ID=Phyra78792;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000092;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 400587 401294 . + . ID=Phyra78792;Parent=Phyra78792;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 400587 401294 . + 0 ID=Phyra78792;Parent=Phyra78792;rank=1 scaffold_34 . exon 400587 401294 . + . ID=Phyra78792.1;Parent=Phyra78792;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 401578 403591 . + . ID=Phyra78793;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000093;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 401578 403591 . + . ID=Phyra78793;Parent=Phyra78793;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 401578 403591 . + 0 ID=Phyra78793;Parent=Phyra78793;rank=1 scaffold_34 . exon 401578 403591 . + . ID=Phyra78793.1;Parent=Phyra78793;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . biological_region 403555 403559 0.999 - . logic_name=eponine scaffold_34 . biological_region 403610 403611 0.999 + . logic_name=eponine scaffold_34 . biological_region 403906 403908 0.999 + . logic_name=eponine scaffold_34 . biological_region 404707 404710 0.999 - . logic_name=eponine scaffold_34 . biological_region 406641 406647 0.999 - . logic_name=eponine scaffold_34 . biological_region 407803 407803 0.999 + . logic_name=eponine scaffold_34 . biological_region 407951 407955 0.999 - . logic_name=eponine scaffold_34 . repeat_region 410089 410098 . ? . description=dust scaffold_34 . biological_region 410476 410481 0.999 - . logic_name=eponine scaffold_34 ensembl protein_coding_gene 403763 404770 . - . ID=Phyra71652;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_34000006;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 403763 404770 . - . ID=Phyra71652;Parent=Phyra71652;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 403763 404770 . - 0 ID=Phyra71652;Parent=Phyra71652;rank=1 scaffold_34 . exon 403763 404770 . - . ID=Phyra71652.1;Parent=Phyra71652;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 405735 407454 . + . ID=Phyra78795;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000095;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 405735 407454 . + . ID=Phyra78795;Parent=Phyra78795;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 405735 405990 . + 0 ID=Phyra78795;Parent=Phyra78795;rank=1 scaffold_34 . exon 405735 405990 . + . ID=Phyra78795.1;Parent=Phyra78795;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 406439 407454 . + 0 ID=Phyra78795;Parent=Phyra78795;rank=2 scaffold_34 . exon 406439 407454 . + . ID=Phyra78795.2;Parent=Phyra78795;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . repeat_region 420725 420812 . ? . description=trf scaffold_34 ensembl protein_coding_gene 419494 419967 . + . ID=Phyra78796;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000096;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 419494 419967 . + . ID=Phyra78796;Parent=Phyra78796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 419494 419967 . + 0 ID=Phyra78796;Parent=Phyra78796;rank=1 scaffold_34 . exon 419494 419967 . + . ID=Phyra78796.1;Parent=Phyra78796;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 420779 421619 . + . ID=Phyra78797;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000097;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 420779 421619 . + . ID=Phyra78797;Parent=Phyra78797;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 420779 420870 . + 0 ID=Phyra78797;Parent=Phyra78797;rank=1 scaffold_34 . exon 420779 420870 . + . ID=Phyra78797.1;Parent=Phyra78797;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 420926 421421 . + 0 ID=Phyra78797;Parent=Phyra78797;rank=2 scaffold_34 . exon 420926 421421 . + . ID=Phyra78797.2;Parent=Phyra78797;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 421596 421619 . + 0 ID=Phyra78797;Parent=Phyra78797;rank=3 scaffold_34 . exon 421596 421619 . + . ID=Phyra78797.3;Parent=Phyra78797;constitutive=1;rank=3 scaffold_34 . repeat_region 424140 424148 . ? . description=dust scaffold_34 . biological_region 427595 427596 0.999 + . logic_name=eponine scaffold_34 ensembl protein_coding_gene 427135 427982 . - . ID=Phyra78798;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000098;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 427135 427982 . - . ID=Phyra78798;Parent=Phyra78798;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 427135 427224 . - 0 ID=Phyra78798;Parent=Phyra78798;rank=4 scaffold_34 . exon 427135 427224 . - . ID=Phyra78798.4;Parent=Phyra78798;constitutive=1;rank=4 scaffold_34 . CDS 427590 427751 . - 0 ID=Phyra78798;Parent=Phyra78798;rank=3 scaffold_34 . exon 427590 427751 . - . ID=Phyra78798.3;Parent=Phyra78798;constitutive=1;rank=3 scaffold_34 . CDS 427789 427914 . - 0 ID=Phyra78798;Parent=Phyra78798;rank=2 scaffold_34 . exon 427789 427914 . - . ID=Phyra78798.2;Parent=Phyra78798;constitutive=1;rank=2 scaffold_34 . CDS 427941 427982 . - 0 ID=Phyra78798;Parent=Phyra78798;rank=1 scaffold_34 . exon 427941 427982 . - . ID=Phyra78798.1;Parent=Phyra78798;constitutive=1;rank=1 scaffold_34 . repeat_region 437848 437919 . ? . description=trf scaffold_34 . repeat_region 443607 443834 . ? . description=dust scaffold_34 . biological_region 445568 445568 0.999 - . logic_name=eponine scaffold_34 ensembl protein_coding_gene 441456 446804 . - . ID=Phyra78799;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000099;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 441456 446804 . - . ID=Phyra78799;Parent=Phyra78799;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 441456 441557 . - 0 ID=Phyra78799;Parent=Phyra78799;rank=9 scaffold_34 . exon 441456 441557 . - . ID=Phyra78799.9;Parent=Phyra78799;constitutive=1;rank=9 scaffold_34 . CDS 441652 441812 . - 0 ID=Phyra78799;Parent=Phyra78799;rank=8 scaffold_34 . exon 441652 441812 . - . ID=Phyra78799.8;Parent=Phyra78799;constitutive=1;ensembl_phase=1;rank=8 scaffold_34 . CDS 442044 442597 . - 0 ID=Phyra78799;Parent=Phyra78799;rank=7 scaffold_34 . exon 442044 442597 . - . ID=Phyra78799.7;Parent=Phyra78799;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_34 . CDS 442682 442802 . - 0 ID=Phyra78799;Parent=Phyra78799;rank=6 scaffold_34 . exon 442682 442802 . - . ID=Phyra78799.6;Parent=Phyra78799;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_34 . CDS 442878 443110 . - 0 ID=Phyra78799;Parent=Phyra78799;rank=5 scaffold_34 . exon 442878 443110 . - . ID=Phyra78799.5;Parent=Phyra78799;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_34 . CDS 443212 443523 . - 0 ID=Phyra78799;Parent=Phyra78799;rank=4 scaffold_34 . exon 443212 443523 . - . ID=Phyra78799.4;Parent=Phyra78799;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_34 . CDS 443907 445750 . - 0 ID=Phyra78799;Parent=Phyra78799;rank=3 scaffold_34 . exon 443907 445750 . - . ID=Phyra78799.3;Parent=Phyra78799;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_34 . CDS 445878 446373 . - 0 ID=Phyra78799;Parent=Phyra78799;rank=2 scaffold_34 . exon 445878 446373 . - . ID=Phyra78799.2;Parent=Phyra78799;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 446407 446804 . - 0 ID=Phyra78799;Parent=Phyra78799;rank=1 scaffold_34 . exon 446407 446804 . - . ID=Phyra78799.1;Parent=Phyra78799;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 ensembl protein_coding_gene 448419 448802 . - . ID=Phyra78800;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000100;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 448419 448802 . - . ID=Phyra78800;Parent=Phyra78800;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 448419 448802 . - 0 ID=Phyra78800;Parent=Phyra78800;rank=1 scaffold_34 . exon 448419 448802 . - . ID=Phyra78800.1;Parent=Phyra78800;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 451612 451989 . - . ID=Phyra78801;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000101;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 451612 451989 . - . ID=Phyra78801;Parent=Phyra78801;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 451612 451989 . - 0 ID=Phyra78801;Parent=Phyra78801;rank=1 scaffold_34 . exon 451612 451989 . - . ID=Phyra78801.1;Parent=Phyra78801;constitutive=1;rank=1 scaffold_34 . repeat_region 460984 461081 . ? . description=trf scaffold_34 . biological_region 461864 461865 0.999 + . logic_name=eponine scaffold_34 . biological_region 461948 461949 0.999 - . logic_name=eponine scaffold_34 . biological_region 462653 462655 0.999 + . logic_name=eponine scaffold_34 . biological_region 463337 463338 0.999 - . logic_name=eponine scaffold_34 . repeat_region 464136 464161 . ? . description=dust scaffold_34 . biological_region 467686 467686 0.999 - . logic_name=eponine scaffold_34 . repeat_region 468499 469066 . ? . description=dust scaffold_34 . repeat_region 469997 470004 . ? . description=dust scaffold_34 . repeat_region 470211 470296 . ? . description=dust scaffold_34 ensembl protein_coding_gene 466042 466803 . - . ID=Phyra71653;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_34000007;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 466042 466803 . - . ID=Phyra71653;Parent=Phyra71653;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 466042 466803 . - 0 ID=Phyra71653;Parent=Phyra71653;rank=1 scaffold_34 . exon 466042 466803 . - . ID=Phyra71653.1;Parent=Phyra71653;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 462215 463323 . - . ID=Phyra78802;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000102;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 462215 463323 . - . ID=Phyra78802;Parent=Phyra78802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 462215 462519 . - 0 ID=Phyra78802;Parent=Phyra78802;rank=2 scaffold_34 . exon 462215 462519 . - . ID=Phyra78802.2;Parent=Phyra78802;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 462543 463323 . - 0 ID=Phyra78802;Parent=Phyra78802;rank=1 scaffold_34 . exon 462543 463323 . - . ID=Phyra78802.1;Parent=Phyra78802;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 ensembl protein_coding_gene 464445 465860 . + . ID=Phyra78803;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000103;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 464445 465860 . + . ID=Phyra78803;Parent=Phyra78803;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 464445 464600 . + 0 ID=Phyra78803;Parent=Phyra78803;rank=1 scaffold_34 . exon 464445 464600 . + . ID=Phyra78803.1;Parent=Phyra78803;constitutive=1;rank=1 scaffold_34 . CDS 464651 464930 . + 0 ID=Phyra78803;Parent=Phyra78803;rank=2 scaffold_34 . exon 464651 464930 . + . ID=Phyra78803.2;Parent=Phyra78803;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_34 . CDS 464998 465107 . + 0 ID=Phyra78803;Parent=Phyra78803;rank=3 scaffold_34 . exon 464998 465107 . + . ID=Phyra78803.3;Parent=Phyra78803;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 465178 465306 . + 0 ID=Phyra78803;Parent=Phyra78803;rank=4 scaffold_34 . exon 465178 465306 . + . ID=Phyra78803.4;Parent=Phyra78803;constitutive=1;rank=4 scaffold_34 . CDS 465381 465860 . + 0 ID=Phyra78803;Parent=Phyra78803;rank=5 scaffold_34 . exon 465381 465860 . + . ID=Phyra78803.5;Parent=Phyra78803;constitutive=1;rank=5 scaffold_34 ensembl protein_coding_gene 467320 469727 . - . ID=Phyra78805;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_34000105;logic_name=jgi_phyra1 scaffold_34 ensembl transcript 467320 469727 . - . ID=Phyra78805;Parent=Phyra78805;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_34 . CDS 467320 468150 . - 0 ID=Phyra78805;Parent=Phyra78805;rank=2 scaffold_34 . exon 467320 468150 . - . ID=Phyra78805.2;Parent=Phyra78805;constitutive=1;rank=2 scaffold_34 . CDS 469104 469727 . - 0 ID=Phyra78805;Parent=Phyra78805;rank=1 scaffold_34 . exon 469104 469727 . - . ID=Phyra78805.1;Parent=Phyra78805;constitutive=1;rank=1 scaffold_34 . repeat_region 471135 489566 . ? . description=dust scaffold_34 . biological_region 489868 489868 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_33 1 496317 scaffold_33 . repeat_region 111 156 . ? . description=trf scaffold_33 . repeat_region 115 157 . ? . description=trf scaffold_33 . repeat_region 115 192 . ? . description=dust scaffold_33 . repeat_region 118 189 . ? . description=trf scaffold_33 . repeat_region 360 418 . + . description=(CAGG)n scaffold_33 . repeat_region 435 484 . ? . description=trf scaffold_33 . repeat_region 546 628 . ? . description=dust scaffold_33 . repeat_region 575 627 . ? . description=trf scaffold_33 . repeat_region 575 628 . ? . description=trf scaffold_33 . repeat_region 1143 1185 . ? . description=trf scaffold_33 . repeat_region 1473 1529 . ? . description=trf scaffold_33 . repeat_region 1474 1534 . ? . description=dust scaffold_33 . repeat_region 2658 2701 . ? . description=trf scaffold_33 . repeat_region 2664 2701 . ? . description=trf scaffold_33 . repeat_region 2951 21797 . ? . description=dust scaffold_33 ensembl tRNA_gene 2392 2463 . + . ID=EPrPRAG00000000103;biotype=tRNA;description=tRNA-Gly for anticodon UCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_33 ensembl transcript 2392 2463 . + . ID=EPrPRAT00000000103;Parent=EPrPRAG00000000103;biotype=tRNA;logic_name=ncrna_eg scaffold_33 ensembl tRNA_gene 2847 2918 . + . ID=EPrPRAG00000000132;biotype=tRNA;description=tRNA-Gly for anticodon UCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_33 ensembl transcript 2847 2918 . + . ID=EPrPRAT00000000132;Parent=EPrPRAG00000000132;biotype=tRNA;logic_name=ncrna_eg scaffold_33 . exon 2392 2463 . + . ID=EPrPRAE00000000103;Parent=EPrPRAT00000000103;constitutive=1;rank=1 scaffold_33 . exon 2847 2918 . + . ID=EPrPRAE00000000132;Parent=EPrPRAT00000000132;constitutive=1;rank=1 scaffold_33 . repeat_region 2951 21797 . ? . description=dust scaffold_33 . biological_region 24834 24836 0.999 - . logic_name=eponine scaffold_33 . biological_region 24948 24954 0.999 - . logic_name=eponine scaffold_33 . biological_region 25252 25252 0.999 - . logic_name=eponine scaffold_33 . biological_region 26323 26328 0.999 + . logic_name=eponine scaffold_33 . biological_region 26545 26546 0.999 - . logic_name=eponine scaffold_33 . biological_region 26643 26643 0.999 + . logic_name=eponine scaffold_33 . biological_region 26773 26781 0.999 - . logic_name=eponine scaffold_33 . biological_region 26821 26823 0.999 - . logic_name=eponine scaffold_33 . biological_region 27533 27537 0.999 - . logic_name=eponine scaffold_33 . biological_region 28136 28137 0.999 + . logic_name=eponine scaffold_33 . repeat_region 28506 28553 . ? . description=dust scaffold_33 ensembl protein_coding_gene 22607 24638 . - . ID=Phyra78591;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000001;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 22607 24638 . - . ID=Phyra78591;Parent=Phyra78591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 22607 22618 . - 0 ID=Phyra78591;Parent=Phyra78591;rank=2 scaffold_33 . exon 22607 22618 . - . ID=Phyra78591.2;Parent=Phyra78591;constitutive=1;rank=2 scaffold_33 . CDS 23001 24638 . - 0 ID=Phyra78591;Parent=Phyra78591;rank=1 scaffold_33 . exon 23001 24638 . - . ID=Phyra78591.1;Parent=Phyra78591;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 26098 28524 . - . ID=Phyra78592;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000002;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 26098 28524 . - . ID=Phyra78592;Parent=Phyra78592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 26098 27846 . - 0 ID=Phyra78592;Parent=Phyra78592;rank=2 scaffold_33 . exon 26098 27846 . - . ID=Phyra78592.2;Parent=Phyra78592;constitutive=1;rank=2 scaffold_33 . CDS 27925 28524 . - 0 ID=Phyra78592;Parent=Phyra78592;rank=1 scaffold_33 . exon 27925 28524 . - . ID=Phyra78592.1;Parent=Phyra78592;constitutive=1;rank=1 scaffold_33 . repeat_region 36930 36953 . ? . description=trf scaffold_33 ensembl protein_coding_gene 32296 35849 . - . ID=Phyra47551;biotype=protein_coding;external_name=gwEuk.33.51.1;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 32296 35849 . - . ID=Phyra47551;Parent=Phyra47551;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 32296 32664 . - 0 ID=Phyra47551;Parent=Phyra47551;rank=4 scaffold_33 . exon 32296 32664 . - . ID=Phyra47551.4;Parent=Phyra47551;constitutive=1;rank=4 scaffold_33 . CDS 32733 33315 . - 0 ID=Phyra47551;Parent=Phyra47551;rank=3 scaffold_33 . exon 32733 33315 . - . ID=Phyra47551.3;Parent=Phyra47551;constitutive=1;ensembl_phase=2;rank=3 scaffold_33 . CDS 33361 34202 . - 0 ID=Phyra47551;Parent=Phyra47551;rank=2 scaffold_33 . exon 33361 34202 . - . ID=Phyra47551.2;Parent=Phyra47551;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_33 . CDS 34242 35849 . - 0 ID=Phyra47551;Parent=Phyra47551;rank=1 scaffold_33 . exon 34242 35849 . - . ID=Phyra47551.1;Parent=Phyra47551;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 36739 44256 . + . ID=Phyra78594;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000004;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 36739 44256 . + . ID=Phyra78594;Parent=Phyra78594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 36739 38796 . + 0 ID=Phyra78594;Parent=Phyra78594;rank=1 scaffold_33 . exon 36739 38796 . + . ID=Phyra78594.1;Parent=Phyra78594;constitutive=1;rank=1 scaffold_33 . CDS 38859 38915 . + 0 ID=Phyra78594;Parent=Phyra78594;rank=2 scaffold_33 . exon 38859 38915 . + . ID=Phyra78594.2;Parent=Phyra78594;constitutive=1;rank=2 scaffold_33 . CDS 39265 44256 . + 0 ID=Phyra78594;Parent=Phyra78594;rank=3 scaffold_33 . exon 39265 44256 . + . ID=Phyra78594.3;Parent=Phyra78594;constitutive=1;rank=3 scaffold_33 . repeat_region 40915 41035 . + . description=(CGA)n scaffold_33 . repeat_region 40979 41013 . ? . description=dust scaffold_33 . biological_region 44165 44167 0.999 - . logic_name=eponine scaffold_33 . biological_region 45420 45423 0.999 + . logic_name=eponine scaffold_33 . biological_region 47762 47762 0.999 + . logic_name=eponine scaffold_33 ensembl protein_coding_gene 44365 45448 . - . ID=Phyra78595;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000005;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 44365 45448 . - . ID=Phyra78595;Parent=Phyra78595;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 44365 45112 . - 0 ID=Phyra78595;Parent=Phyra78595;rank=2 scaffold_33 . exon 44365 45112 . - . ID=Phyra78595.2;Parent=Phyra78595;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 45222 45448 . - 0 ID=Phyra78595;Parent=Phyra78595;rank=1 scaffold_33 . exon 45222 45448 . - . ID=Phyra78595.1;Parent=Phyra78595;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 ensembl protein_coding_gene 46224 47525 . + . ID=Phyra78596;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000006;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 46224 47525 . + . ID=Phyra78596;Parent=Phyra78596;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 46224 47525 . + 0 ID=Phyra78596;Parent=Phyra78596;rank=1 scaffold_33 . exon 46224 47525 . + . ID=Phyra78596.1;Parent=Phyra78596;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 47628 49023 . + . ID=Phyra78597;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000007;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 47628 49023 . + . ID=Phyra78597;Parent=Phyra78597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 47628 48226 . + 0 ID=Phyra78597;Parent=Phyra78597;rank=1 scaffold_33 . exon 47628 48226 . + . ID=Phyra78597.1;Parent=Phyra78597;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 48291 48370 . + 0 ID=Phyra78597;Parent=Phyra78597;rank=2 scaffold_33 . exon 48291 48370 . + . ID=Phyra78597.2;Parent=Phyra78597;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 48434 49023 . + 0 ID=Phyra78597;Parent=Phyra78597;rank=3 scaffold_33 . exon 48434 49023 . + . ID=Phyra78597.3;Parent=Phyra78597;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 ensembl protein_coding_gene 49497 50738 . - . ID=Phyra78598;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000008;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 49497 50738 . - . ID=Phyra78598;Parent=Phyra78598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 49497 50738 . - 0 ID=Phyra78598;Parent=Phyra78598;rank=1 scaffold_33 . exon 49497 50738 . - . ID=Phyra78598.1;Parent=Phyra78598;constitutive=1;rank=1 scaffold_33 . repeat_region 55481 55500 . ? . description=trf scaffold_33 . repeat_region 58631 58670 . ? . description=trf scaffold_33 ensembl protein_coding_gene 54981 55523 . - . ID=Phyra78599;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000009;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 54981 55523 . - . ID=Phyra78599;Parent=Phyra78599;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 54981 55220 . - 0 ID=Phyra78599;Parent=Phyra78599;rank=3 scaffold_33 . exon 54981 55220 . - . ID=Phyra78599.3;Parent=Phyra78599;constitutive=1;rank=3 scaffold_33 . CDS 55245 55267 . - 0 ID=Phyra78599;Parent=Phyra78599;rank=2 scaffold_33 . exon 55245 55267 . - . ID=Phyra78599.2;Parent=Phyra78599;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 55310 55523 . - 0 ID=Phyra78599;Parent=Phyra78599;rank=1 scaffold_33 . exon 55310 55523 . - . ID=Phyra78599.1;Parent=Phyra78599;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 ensembl protein_coding_gene 59429 60670 . - . ID=Phyra78600;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000010;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 59429 60670 . - . ID=Phyra78600;Parent=Phyra78600;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 59429 60670 . - 0 ID=Phyra78600;Parent=Phyra78600;rank=1 scaffold_33 . exon 59429 60670 . - . ID=Phyra78600.1;Parent=Phyra78600;constitutive=1;rank=1 scaffold_33 . repeat_region 63019 63028 . ? . description=dust scaffold_33 . repeat_region 64340 64347 . ? . description=dust scaffold_33 . repeat_region 66151 66160 . ? . description=dust scaffold_33 ensembl protein_coding_gene 68920 69438 . - . ID=Phyra78601;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000011;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 68920 69438 . - . ID=Phyra78601;Parent=Phyra78601;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 68920 69438 . - 0 ID=Phyra78601;Parent=Phyra78601;rank=1 scaffold_33 . exon 68920 69438 . - . ID=Phyra78601.1;Parent=Phyra78601;constitutive=1;rank=1 scaffold_33 . repeat_region 75355 75376 . ? . description=trf scaffold_33 . repeat_region 75707 75743 . ? . description=trf scaffold_33 . biological_region 78258 78265 0.999 + . logic_name=eponine scaffold_33 . biological_region 78536 78538 0.999 + . logic_name=eponine scaffold_33 ensembl protein_coding_gene 75515 75961 . + . ID=Phyra78602;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000012;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 75515 75961 . + . ID=Phyra78602;Parent=Phyra78602;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 75515 75961 . + 0 ID=Phyra78602;Parent=Phyra78602;rank=1 scaffold_33 . exon 75515 75961 . + . ID=Phyra78602.1;Parent=Phyra78602;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 77486 77923 . + . ID=Phyra78603;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000013;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 77486 77923 . + . ID=Phyra78603;Parent=Phyra78603;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 77486 77923 . + 0 ID=Phyra78603;Parent=Phyra78603;rank=1 scaffold_33 . exon 77486 77923 . + . ID=Phyra78603.1;Parent=Phyra78603;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 78256 79410 . - . ID=Phyra78604;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000014;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 78256 79410 . - . ID=Phyra78604;Parent=Phyra78604;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 78256 79410 . - 0 ID=Phyra78604;Parent=Phyra78604;rank=1 scaffold_33 . exon 78256 79410 . - . ID=Phyra78604.1;Parent=Phyra78604;constitutive=1;rank=1 scaffold_33 . repeat_region 85483 85532 . ? . description=dust scaffold_33 ensembl protein_coding_gene 82114 83088 . - . ID=Phyra71640;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_33000001;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 82114 83088 . - . ID=Phyra71640;Parent=Phyra71640;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 82114 83088 . - 0 ID=Phyra71640;Parent=Phyra71640;rank=1 scaffold_33 . exon 82114 83088 . - . ID=Phyra71640.1;Parent=Phyra71640;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 79689 82010 . + . ID=Phyra78605;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000015;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 79689 82010 . + . ID=Phyra78605;Parent=Phyra78605;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 79689 82010 . + 0 ID=Phyra78605;Parent=Phyra78605;rank=1 scaffold_33 . exon 79689 82010 . + . ID=Phyra78605.1;Parent=Phyra78605;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 83537 84973 . + . ID=Phyra78607;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000017;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 83537 84973 . + . ID=Phyra78607;Parent=Phyra78607;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 83537 84973 . + 0 ID=Phyra78607;Parent=Phyra78607;rank=1 scaffold_33 . exon 83537 84973 . + . ID=Phyra78607.1;Parent=Phyra78607;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 85105 85970 . - . ID=Phyra78608;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000018;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 85105 85970 . - . ID=Phyra78608;Parent=Phyra78608;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 85105 85443 . - 0 ID=Phyra78608;Parent=Phyra78608;rank=2 scaffold_33 . exon 85105 85443 . - . ID=Phyra78608.2;Parent=Phyra78608;constitutive=1;rank=2 scaffold_33 . CDS 85548 85970 . - 0 ID=Phyra78608;Parent=Phyra78608;rank=1 scaffold_33 . exon 85548 85970 . - . ID=Phyra78608.1;Parent=Phyra78608;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 86419 87855 . + . ID=Phyra78609;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000019;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 86419 87855 . + . ID=Phyra78609;Parent=Phyra78609;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 86419 87855 . + 0 ID=Phyra78609;Parent=Phyra78609;rank=1 scaffold_33 . exon 86419 87855 . + . ID=Phyra78609.1;Parent=Phyra78609;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 87987 89409 . - . ID=Phyra78610;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000020;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 87987 89409 . - . ID=Phyra78610;Parent=Phyra78610;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 87987 88534 . - 0 ID=Phyra78610;Parent=Phyra78610;rank=4 scaffold_33 . exon 87987 88534 . - . ID=Phyra78610.4;Parent=Phyra78610;constitutive=1;ensembl_phase=1;rank=4 scaffold_33 . CDS 88894 88976 . - 0 ID=Phyra78610;Parent=Phyra78610;rank=3 scaffold_33 . exon 88894 88976 . - . ID=Phyra78610.3;Parent=Phyra78610;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_33 . CDS 89047 89135 . - 0 ID=Phyra78610;Parent=Phyra78610;rank=2 scaffold_33 . exon 89047 89135 . - . ID=Phyra78610.2;Parent=Phyra78610;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_33 . CDS 89200 89409 . - 0 ID=Phyra78610;Parent=Phyra78610;rank=1 scaffold_33 . exon 89200 89409 . - . ID=Phyra78610.1;Parent=Phyra78610;constitutive=1;rank=1 scaffold_33 . biological_region 90942 90946 0.999 - . logic_name=eponine scaffold_33 . biological_region 91023 91023 0.999 + . logic_name=eponine scaffold_33 . repeat_region 93805 94230 . ? . description=trf scaffold_33 . repeat_region 97397 97577 . ? . description=trf scaffold_33 . biological_region 97483 97484 0.999 + . logic_name=eponine scaffold_33 . biological_region 97770 97774 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 94625 94981 . - . ID=Phyra47565;biotype=protein_coding;external_name=gwEuk.33.65.1;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 94625 94981 . - . ID=Phyra47565;Parent=Phyra47565;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 94625 94981 . - 0 ID=Phyra47565;Parent=Phyra47565;rank=1 scaffold_33 . exon 94625 94981 . - . ID=Phyra47565.1;Parent=Phyra47565;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 89675 90505 . + . ID=Phyra78611;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000021;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 89675 90505 . + . ID=Phyra78611;Parent=Phyra78611;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 89675 90067 . + 0 ID=Phyra78611;Parent=Phyra78611;rank=1 scaffold_33 . exon 89675 90067 . + . ID=Phyra78611.1;Parent=Phyra78611;constitutive=1;rank=1 scaffold_33 . CDS 90144 90342 . + 0 ID=Phyra78611;Parent=Phyra78611;rank=2 scaffold_33 . exon 90144 90342 . + . ID=Phyra78611.2;Parent=Phyra78611;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_33 . CDS 90411 90505 . + 0 ID=Phyra78611;Parent=Phyra78611;rank=3 scaffold_33 . exon 90411 90505 . + . ID=Phyra78611.3;Parent=Phyra78611;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 ensembl protein_coding_gene 90786 91199 . - . ID=Phyra78612;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000022;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 90786 91199 . - . ID=Phyra78612;Parent=Phyra78612;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 90786 91199 . - 0 ID=Phyra78612;Parent=Phyra78612;rank=1 scaffold_33 . exon 90786 91199 . - . ID=Phyra78612.1;Parent=Phyra78612;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 97219 97743 . + . ID=Phyra78613;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000023;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 97219 97743 . + . ID=Phyra78613;Parent=Phyra78613;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 97219 97743 . + 0 ID=Phyra78613;Parent=Phyra78613;rank=1 scaffold_33 . exon 97219 97743 . + . ID=Phyra78613.1;Parent=Phyra78613;constitutive=1;rank=1 scaffold_33 . repeat_region 103557 103565 . ? . description=dust scaffold_33 . repeat_region 104303 105563 . ? . description=dust scaffold_33 . repeat_region 109130 109143 . ? . description=dust scaffold_33 . biological_region 111021 111022 0.999 - . logic_name=eponine scaffold_33 . repeat_region 116668 116724 . ? . description=trf scaffold_33 . repeat_region 116681 116724 . ? . description=trf scaffold_33 . biological_region 117890 117892 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 109251 109649 . + . ID=Phyra78614;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000024;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 109251 109649 . + . ID=Phyra78614;Parent=Phyra78614;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 109251 109649 . + 0 ID=Phyra78614;Parent=Phyra78614;rank=1 scaffold_33 . exon 109251 109649 . + . ID=Phyra78614.1;Parent=Phyra78614;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 113395 114765 . + . ID=Phyra78615;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000025;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 113395 114765 . + . ID=Phyra78615;Parent=Phyra78615;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 113395 114500 . + 0 ID=Phyra78615;Parent=Phyra78615;rank=1 scaffold_33 . exon 113395 114500 . + . ID=Phyra78615.1;Parent=Phyra78615;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 114747 114765 . + 0 ID=Phyra78615;Parent=Phyra78615;rank=2 scaffold_33 . exon 114747 114765 . + . ID=Phyra78615.2;Parent=Phyra78615;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . repeat_region 119976 119983 . ? . description=dust scaffold_33 . repeat_region 124139 124153 . ? . description=dust scaffold_33 . repeat_region 128681 128779 . ? . description=dust scaffold_33 . repeat_region 128784 129723 . + . description=GypsyPi-1c_I-int scaffold_33 ensembl protein_coding_gene 124261 124659 . + . ID=Phyra78616;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000026;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 124261 124659 . + . ID=Phyra78616;Parent=Phyra78616;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 124261 124659 . + 0 ID=Phyra78616;Parent=Phyra78616;rank=1 scaffold_33 . exon 124261 124659 . + . ID=Phyra78616.1;Parent=Phyra78616;constitutive=1;rank=1 scaffold_33 . biological_region 134632 134637 0.999 - . logic_name=eponine scaffold_33 . biological_region 134655 134661 0.999 - . logic_name=eponine scaffold_33 . biological_region 134712 134714 0.999 + . logic_name=eponine scaffold_33 . biological_region 138216 138224 0.999 + . logic_name=eponine scaffold_33 ensembl protein_coding_gene 133891 134790 . - . ID=Phyra78617;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000027;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 133891 134790 . - . ID=Phyra78617;Parent=Phyra78617;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 133891 134790 . - 0 ID=Phyra78617;Parent=Phyra78617;rank=1 scaffold_33 . exon 133891 134790 . - . ID=Phyra78617.1;Parent=Phyra78617;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 136590 138302 . - . ID=Phyra78618;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000028;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 136590 138302 . - . ID=Phyra78618;Parent=Phyra78618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 136590 138302 . - 0 ID=Phyra78618;Parent=Phyra78618;rank=1 scaffold_33 . exon 136590 138302 . - . ID=Phyra78618.1;Parent=Phyra78618;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 138628 142236 . + . ID=Phyra78619;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000029;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 138628 142236 . + . ID=Phyra78619;Parent=Phyra78619;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 138628 142236 . + 0 ID=Phyra78619;Parent=Phyra78619;rank=1 scaffold_33 . exon 138628 142236 . + . ID=Phyra78619.1;Parent=Phyra78619;constitutive=1;rank=1 scaffold_33 . repeat_region 146553 146561 . ? . description=dust scaffold_33 ensembl protein_coding_gene 142637 144280 . - . ID=Phyra78620;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000030;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 142637 144280 . - . ID=Phyra78620;Parent=Phyra78620;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 142637 143185 . - 0 ID=Phyra78620;Parent=Phyra78620;rank=2 scaffold_33 . exon 142637 143185 . - . ID=Phyra78620.2;Parent=Phyra78620;constitutive=1;rank=2 scaffold_33 . CDS 143294 144280 . - 0 ID=Phyra78620;Parent=Phyra78620;rank=1 scaffold_33 . exon 143294 144280 . - . ID=Phyra78620.1;Parent=Phyra78620;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 145224 145916 . - . ID=Phyra78621;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000031;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 145224 145916 . - . ID=Phyra78621;Parent=Phyra78621;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 145224 145581 . - 0 ID=Phyra78621;Parent=Phyra78621;rank=2 scaffold_33 . exon 145224 145581 . - . ID=Phyra78621.2;Parent=Phyra78621;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 145642 145916 . - 0 ID=Phyra78621;Parent=Phyra78621;rank=1 scaffold_33 . exon 145642 145916 . - . ID=Phyra78621.1;Parent=Phyra78621;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . biological_region 150966 150973 0.999 + . logic_name=eponine scaffold_33 . biological_region 152997 153004 0.999 + . logic_name=eponine scaffold_33 . biological_region 153076 153081 0.999 + . logic_name=eponine scaffold_33 . biological_region 154011 154013 0.999 + . logic_name=eponine scaffold_33 ensembl protein_coding_gene 150840 153143 . - . ID=Phyra78622;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000032;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 150840 153143 . - . ID=Phyra78622;Parent=Phyra78622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 150840 151844 . - 0 ID=Phyra78622;Parent=Phyra78622;rank=2 scaffold_33 . exon 150840 151844 . - . ID=Phyra78622.2;Parent=Phyra78622;constitutive=1;rank=2 scaffold_33 . CDS 152115 153143 . - 0 ID=Phyra78622;Parent=Phyra78622;rank=1 scaffold_33 . exon 152115 153143 . - . ID=Phyra78622.1;Parent=Phyra78622;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 153443 154333 . + . ID=Phyra78623;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000033;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 153443 154333 . + . ID=Phyra78623;Parent=Phyra78623;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 153443 153511 . + 0 ID=Phyra78623;Parent=Phyra78623;rank=1 scaffold_33 . exon 153443 153511 . + . ID=Phyra78623.1;Parent=Phyra78623;constitutive=1;rank=1 scaffold_33 . CDS 153575 154333 . + 0 ID=Phyra78623;Parent=Phyra78623;rank=2 scaffold_33 . exon 153575 154333 . + . ID=Phyra78623.2;Parent=Phyra78623;constitutive=1;rank=2 scaffold_33 ensembl protein_coding_gene 155525 155935 . + . ID=Phyra78624;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000034;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 155525 155935 . + . ID=Phyra78624;Parent=Phyra78624;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 155525 155935 . + 0 ID=Phyra78624;Parent=Phyra78624;rank=1 scaffold_33 . exon 155525 155935 . + . ID=Phyra78624.1;Parent=Phyra78624;constitutive=1;rank=1 scaffold_33 . repeat_region 159350 159395 . ? . description=trf scaffold_33 . repeat_region 161208 161257 . ? . description=dust scaffold_33 ensembl protein_coding_gene 170797 173404 . - . ID=Phyra78625;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000035;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 170797 173404 . - . ID=Phyra78625;Parent=Phyra78625;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 170797 171008 . - 0 ID=Phyra78625;Parent=Phyra78625;rank=7 scaffold_33 . exon 170797 171008 . - . ID=Phyra78625.7;Parent=Phyra78625;constitutive=1;ensembl_phase=1;rank=7 scaffold_33 . CDS 171041 171221 . - 0 ID=Phyra78625;Parent=Phyra78625;rank=6 scaffold_33 . exon 171041 171221 . - . ID=Phyra78625.6;Parent=Phyra78625;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_33 . CDS 171355 171555 . - 0 ID=Phyra78625;Parent=Phyra78625;rank=5 scaffold_33 . exon 171355 171555 . - . ID=Phyra78625.5;Parent=Phyra78625;constitutive=1;rank=5 scaffold_33 . CDS 172409 172445 . - 0 ID=Phyra78625;Parent=Phyra78625;rank=4 scaffold_33 . exon 172409 172445 . - . ID=Phyra78625.4;Parent=Phyra78625;constitutive=1;ensembl_phase=2;rank=4 scaffold_33 . CDS 172542 172707 . - 0 ID=Phyra78625;Parent=Phyra78625;rank=3 scaffold_33 . exon 172542 172707 . - . ID=Phyra78625.3;Parent=Phyra78625;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_33 . CDS 172824 172989 . - 0 ID=Phyra78625;Parent=Phyra78625;rank=2 scaffold_33 . exon 172824 172989 . - . ID=Phyra78625.2;Parent=Phyra78625;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_33 . CDS 173063 173404 . - 0 ID=Phyra78625;Parent=Phyra78625;rank=1 scaffold_33 . exon 173063 173404 . - . ID=Phyra78625.1;Parent=Phyra78625;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 175156 177764 . - . ID=Phyra78626;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000036;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 175156 177764 . - . ID=Phyra78626;Parent=Phyra78626;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 175156 175367 . - 0 ID=Phyra78626;Parent=Phyra78626;rank=6 scaffold_33 . exon 175156 175367 . - . ID=Phyra78626.6;Parent=Phyra78626;constitutive=1;ensembl_phase=1;rank=6 scaffold_33 . CDS 175400 175580 . - 0 ID=Phyra78626;Parent=Phyra78626;rank=5 scaffold_33 . exon 175400 175580 . - . ID=Phyra78626.5;Parent=Phyra78626;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_33 . CDS 175714 175914 . - 0 ID=Phyra78626;Parent=Phyra78626;rank=4 scaffold_33 . exon 175714 175914 . - . ID=Phyra78626.4;Parent=Phyra78626;constitutive=1;rank=4 scaffold_33 . CDS 176768 176804 . - 0 ID=Phyra78626;Parent=Phyra78626;rank=3 scaffold_33 . exon 176768 176804 . - . ID=Phyra78626.3;Parent=Phyra78626;constitutive=1;ensembl_phase=2;rank=3 scaffold_33 . CDS 176901 177349 . - 0 ID=Phyra78626;Parent=Phyra78626;rank=2 scaffold_33 . exon 176901 177349 . - . ID=Phyra78626.2;Parent=Phyra78626;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_33 . CDS 177423 177764 . - 0 ID=Phyra78626;Parent=Phyra78626;rank=1 scaffold_33 . exon 177423 177764 . - . ID=Phyra78626.1;Parent=Phyra78626;constitutive=1;rank=1 scaffold_33 . repeat_region 181166 181175 . ? . description=dust scaffold_33 . repeat_region 181883 181932 . ? . description=dust scaffold_33 . repeat_region 181934 182626 . - . description=GypsyPi-1c_I-int scaffold_33 . repeat_region 182930 182982 . ? . description=dust scaffold_33 . repeat_region 185696 185705 . ? . description=dust scaffold_33 ensembl protein_coding_gene 178906 179337 . - . ID=Phyra78627;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000037;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 178906 179337 . - . ID=Phyra78627;Parent=Phyra78627;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 178906 179337 . - 0 ID=Phyra78627;Parent=Phyra78627;rank=1 scaffold_33 . exon 178906 179337 . - . ID=Phyra78627.1;Parent=Phyra78627;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 180297 182904 . - . ID=Phyra78628;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000038;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 180297 182904 . - . ID=Phyra78628;Parent=Phyra78628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 180297 180995 . - 0 ID=Phyra78628;Parent=Phyra78628;rank=3 scaffold_33 . exon 180297 180995 . - . ID=Phyra78628.3;Parent=Phyra78628;constitutive=1;rank=3 scaffold_33 . CDS 181119 181139 . - 0 ID=Phyra78628;Parent=Phyra78628;rank=2 scaffold_33 . exon 181119 181139 . - . ID=Phyra78628.2;Parent=Phyra78628;constitutive=1;rank=2 scaffold_33 . CDS 181939 182904 . - 0 ID=Phyra78628;Parent=Phyra78628;rank=1 scaffold_33 . exon 181939 182904 . - . ID=Phyra78628.1;Parent=Phyra78628;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 183433 184706 . - . ID=Phyra78629;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000039;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 183433 184706 . - . ID=Phyra78629;Parent=Phyra78629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 183433 184047 . - 0 ID=Phyra78629;Parent=Phyra78629;rank=3 scaffold_33 . exon 183433 184047 . - . ID=Phyra78629.3;Parent=Phyra78629;constitutive=1;rank=3 scaffold_33 . CDS 184164 184420 . - 0 ID=Phyra78629;Parent=Phyra78629;rank=2 scaffold_33 . exon 184164 184420 . - . ID=Phyra78629.2;Parent=Phyra78629;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 184490 184706 . - 0 ID=Phyra78629;Parent=Phyra78629;rank=1 scaffold_33 . exon 184490 184706 . - . ID=Phyra78629.1;Parent=Phyra78629;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . repeat_region 189369 189390 . ? . description=trf scaffold_33 . repeat_region 191025 191054 . ? . description=trf scaffold_33 ensembl protein_coding_gene 191433 191630 . - . ID=Phyra47572;biotype=protein_coding;external_name=gwEuk.33.72.1;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 191433 191630 . - . ID=Phyra47572;Parent=Phyra47572;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 191433 191630 . - 0 ID=Phyra47572;Parent=Phyra47572;rank=1 scaffold_33 . exon 191433 191630 . - . ID=Phyra47572.1;Parent=Phyra47572;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 193421 193852 . - . ID=Phyra47575;biotype=protein_coding;external_name=gwEuk.33.75.1;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 193421 193852 . - . ID=Phyra47575;Parent=Phyra47575;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 193421 193852 . - 0 ID=Phyra47575;Parent=Phyra47575;rank=1 scaffold_33 . exon 193421 193852 . - . ID=Phyra47575.1;Parent=Phyra47575;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 189191 189859 . + . ID=Phyra78630;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000040;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 189191 189859 . + . ID=Phyra78630;Parent=Phyra78630;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 189191 189859 . + 0 ID=Phyra78630;Parent=Phyra78630;rank=1 scaffold_33 . exon 189191 189859 . + . ID=Phyra78630.1;Parent=Phyra78630;constitutive=1;rank=1 scaffold_33 . repeat_region 198573 198602 . ? . description=dust scaffold_33 . biological_region 199677 199679 0.999 + . logic_name=eponine scaffold_33 . repeat_region 202917 202928 . ? . description=dust scaffold_33 . repeat_region 203479 203491 . ? . description=dust scaffold_33 . repeat_region 205472 205510 . ? . description=dust scaffold_33 . repeat_region 212504 212530 . ? . description=trf scaffold_33 . repeat_region 220982 220990 . ? . description=dust scaffold_33 ensembl protein_coding_gene 223181 224317 . + . ID=Phyra78631;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000041;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 223181 224317 . + . ID=Phyra78631;Parent=Phyra78631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 223181 224317 . + 0 ID=Phyra78631;Parent=Phyra78631;rank=1 scaffold_33 . exon 223181 224317 . + . ID=Phyra78631.1;Parent=Phyra78631;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 224810 225496 . + . ID=Phyra78632;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000042;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 224810 225496 . + . ID=Phyra78632;Parent=Phyra78632;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 224810 225496 . + 0 ID=Phyra78632;Parent=Phyra78632;rank=1 scaffold_33 . exon 224810 225496 . + . ID=Phyra78632.1;Parent=Phyra78632;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 225724 228156 . + . ID=Phyra78633;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000043;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 225724 228156 . + . ID=Phyra78633;Parent=Phyra78633;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 225724 228156 . + 0 ID=Phyra78633;Parent=Phyra78633;rank=1 scaffold_33 . exon 225724 228156 . + . ID=Phyra78633.1;Parent=Phyra78633;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 228230 230444 . - . ID=Phyra78634;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000044;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 228230 230444 . - . ID=Phyra78634;Parent=Phyra78634;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 228230 229696 . - 0 ID=Phyra78634;Parent=Phyra78634;rank=3 scaffold_33 . exon 228230 229696 . - . ID=Phyra78634.3;Parent=Phyra78634;constitutive=1;rank=3 scaffold_33 . CDS 229766 230081 . - 0 ID=Phyra78634;Parent=Phyra78634;rank=2 scaffold_33 . CDS 230146 230444 . - 0 ID=Phyra78634;Parent=Phyra78634;rank=1 scaffold_33 . biological_region 231158 231170 0.999 + . logic_name=eponine scaffold_33 . biological_region 231183 231187 0.999 + . logic_name=eponine scaffold_33 . biological_region 231193 231199 0.999 + . logic_name=eponine scaffold_33 . biological_region 231217 231220 0.999 + . logic_name=eponine scaffold_33 . biological_region 231258 231263 0.999 + . logic_name=eponine scaffold_33 . biological_region 231343 231345 0.999 - . logic_name=eponine scaffold_33 . exon 229766 230081 . - . ID=Phyra78634.2;Parent=Phyra78634;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . exon 230146 230444 . - . ID=Phyra78634.1;Parent=Phyra78634;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 ensembl protein_coding_gene 231160 233471 . + . ID=Phyra78635;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000045;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 231160 233471 . + . ID=Phyra78635;Parent=Phyra78635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 231160 232394 . + 0 ID=Phyra78635;Parent=Phyra78635;rank=1 scaffold_33 . exon 231160 232394 . + . ID=Phyra78635.1;Parent=Phyra78635;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 232468 232576 . + 0 ID=Phyra78635;Parent=Phyra78635;rank=2 scaffold_33 . exon 232468 232576 . + . ID=Phyra78635.2;Parent=Phyra78635;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 232653 233471 . + 0 ID=Phyra78635;Parent=Phyra78635;rank=3 scaffold_33 . exon 232653 233471 . + . ID=Phyra78635.3;Parent=Phyra78635;constitutive=1;rank=3 scaffold_33 ensembl protein_coding_gene 233958 235771 . + . ID=Phyra78636;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000046;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 233958 235771 . + . ID=Phyra78636;Parent=Phyra78636;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 233958 235287 . + 0 ID=Phyra78636;Parent=Phyra78636;rank=1 scaffold_33 . exon 233958 235287 . + . ID=Phyra78636.1;Parent=Phyra78636;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 235355 235636 . + 0 ID=Phyra78636;Parent=Phyra78636;rank=2 scaffold_33 . exon 235355 235636 . + . ID=Phyra78636.2;Parent=Phyra78636;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 235695 235771 . + 0 ID=Phyra78636;Parent=Phyra78636;rank=3 scaffold_33 . exon 235695 235771 . + . ID=Phyra78636.3;Parent=Phyra78636;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 . repeat_region 243035 243043 . ? . description=dust scaffold_33 . repeat_region 245793 245810 . ? . description=dust scaffold_33 . repeat_region 246217 246226 . ? . description=dust scaffold_33 . repeat_region 247534 247543 . ? . description=dust scaffold_33 ensembl protein_coding_gene 247692 249358 . + . ID=Phyra47507;biotype=protein_coding;external_name=gwEuk.33.7.1;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 247692 249358 . + . ID=Phyra47507;Parent=Phyra47507;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 247692 247915 . + 0 ID=Phyra47507;Parent=Phyra47507;rank=1 scaffold_33 . exon 247692 247915 . + . ID=Phyra47507.1;Parent=Phyra47507;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 247998 248158 . + 0 ID=Phyra47507;Parent=Phyra47507;rank=2 scaffold_33 . exon 247998 248158 . + . ID=Phyra47507.2;Parent=Phyra47507;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 248220 248719 . + 0 ID=Phyra47507;Parent=Phyra47507;rank=3 scaffold_33 . CDS 248807 248857 . + 0 ID=Phyra47507;Parent=Phyra47507;rank=4 scaffold_33 . CDS 248920 249114 . + 0 ID=Phyra47507;Parent=Phyra47507;rank=5 scaffold_33 . CDS 249179 249358 . + 0 ID=Phyra47507;Parent=Phyra47507;rank=6 scaffold_33 ensembl protein_coding_gene 239212 241728 . + . ID=Phyra78637;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000047;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 239212 241728 . + . ID=Phyra78637;Parent=Phyra78637;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 239212 239395 . + 0 ID=Phyra78637;Parent=Phyra78637;rank=1 scaffold_33 . exon 239212 239395 . + . ID=Phyra78637.1;Parent=Phyra78637;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 239453 239734 . + 0 ID=Phyra78637;Parent=Phyra78637;rank=2 scaffold_33 . exon 239453 239734 . + . ID=Phyra78637.2;Parent=Phyra78637;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 239803 239841 . + 0 ID=Phyra78637;Parent=Phyra78637;rank=3 scaffold_33 . exon 239803 239841 . + . ID=Phyra78637.3;Parent=Phyra78637;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_33 . CDS 239961 240022 . + 0 ID=Phyra78637;Parent=Phyra78637;rank=4 scaffold_33 . exon 239961 240022 . + . ID=Phyra78637.4;Parent=Phyra78637;constitutive=1;ensembl_phase=1;rank=4 scaffold_33 . CDS 240073 240178 . + 0 ID=Phyra78637;Parent=Phyra78637;rank=5 scaffold_33 . exon 240073 240178 . + . ID=Phyra78637.5;Parent=Phyra78637;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_33 . CDS 240330 240406 . + 0 ID=Phyra78637;Parent=Phyra78637;rank=6 scaffold_33 . exon 240330 240406 . + . ID=Phyra78637.6;Parent=Phyra78637;constitutive=1;ensembl_phase=1;rank=6 scaffold_33 . CDS 240443 240823 . + 0 ID=Phyra78637;Parent=Phyra78637;rank=7 scaffold_33 . exon 240443 240823 . + . ID=Phyra78637.7;Parent=Phyra78637;constitutive=1;rank=7 scaffold_33 . CDS 240887 241008 . + 0 ID=Phyra78637;Parent=Phyra78637;rank=8 scaffold_33 . exon 240887 241008 . + . ID=Phyra78637.8;Parent=Phyra78637;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_33 . CDS 241066 241178 . + 0 ID=Phyra78637;Parent=Phyra78637;rank=9 scaffold_33 . exon 241066 241178 . + . ID=Phyra78637.9;Parent=Phyra78637;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_33 . CDS 241253 241728 . + 0 ID=Phyra78637;Parent=Phyra78637;rank=10 scaffold_33 . exon 241253 241728 . + . ID=Phyra78637.10;Parent=Phyra78637;constitutive=1;ensembl_phase=1;rank=10 scaffold_33 ensembl protein_coding_gene 242062 242694 . - . ID=Phyra78638;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000048;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 242062 242694 . - . ID=Phyra78638;Parent=Phyra78638;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 242062 242330 . - 0 ID=Phyra78638;Parent=Phyra78638;rank=2 scaffold_33 . exon 242062 242330 . - . ID=Phyra78638.2;Parent=Phyra78638;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 242382 242694 . - 0 ID=Phyra78638;Parent=Phyra78638;rank=1 scaffold_33 . exon 242382 242694 . - . ID=Phyra78638.1;Parent=Phyra78638;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 ensembl protein_coding_gene 243465 243791 . - . ID=Phyra78639;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000049;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 243465 243791 . - . ID=Phyra78639;Parent=Phyra78639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 243465 243791 . - 0 ID=Phyra78639;Parent=Phyra78639;rank=1 scaffold_33 . exon 243465 243791 . - . ID=Phyra78639.1;Parent=Phyra78639;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 246045 246934 . - . ID=Phyra78640;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000050;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 246045 246934 . - . ID=Phyra78640;Parent=Phyra78640;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 246045 246182 . - 0 ID=Phyra78640;Parent=Phyra78640;rank=4 scaffold_33 . exon 246045 246182 . - . ID=Phyra78640.4;Parent=Phyra78640;constitutive=1;rank=4 scaffold_33 . CDS 246251 246401 . - 0 ID=Phyra78640;Parent=Phyra78640;rank=3 scaffold_33 . exon 246251 246401 . - . ID=Phyra78640.3;Parent=Phyra78640;constitutive=1;ensembl_phase=2;rank=3 scaffold_33 . CDS 246482 246566 . - 0 ID=Phyra78640;Parent=Phyra78640;rank=2 scaffold_33 . exon 246482 246566 . - . ID=Phyra78640.2;Parent=Phyra78640;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_33 . CDS 246661 246934 . - 0 ID=Phyra78640;Parent=Phyra78640;rank=1 scaffold_33 . exon 246661 246934 . - . ID=Phyra78640.1;Parent=Phyra78640;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . repeat_region 252021 252041 . ? . description=trf scaffold_33 . exon 248220 248719 . + . ID=Phyra47507.3;Parent=Phyra47507;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 . exon 248807 248857 . + . ID=Phyra47507.4;Parent=Phyra47507;constitutive=1;rank=4 scaffold_33 . exon 248920 249114 . + . ID=Phyra47507.5;Parent=Phyra47507;constitutive=1;rank=5 scaffold_33 . exon 249179 249358 . + . ID=Phyra47507.6;Parent=Phyra47507;constitutive=1;rank=6 scaffold_33 ensembl protein_coding_gene 249547 250625 . + . ID=Phyra78642;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000052;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 249547 250625 . + . ID=Phyra78642;Parent=Phyra78642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 249547 249650 . + 0 ID=Phyra78642;Parent=Phyra78642;rank=1 scaffold_33 . exon 249547 249650 . + . ID=Phyra78642.1;Parent=Phyra78642;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 249719 250625 . + 0 ID=Phyra78642;Parent=Phyra78642;rank=2 scaffold_33 . exon 249719 250625 . + . ID=Phyra78642.2;Parent=Phyra78642;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 ensembl protein_coding_gene 250755 251201 . - . ID=Phyra78643;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000053;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 250755 251201 . - . ID=Phyra78643;Parent=Phyra78643;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 250755 251201 . - 0 ID=Phyra78643;Parent=Phyra78643;rank=1 scaffold_33 . exon 250755 251201 . - . ID=Phyra78643.1;Parent=Phyra78643;constitutive=1;rank=1 scaffold_33 . repeat_region 258932 258981 . ? . description=dust scaffold_33 . repeat_region 262256 262308 . ? . description=dust scaffold_33 . biological_region 265250 265252 0.999 - . logic_name=eponine scaffold_33 . repeat_region 266065 266072 . ? . description=dust scaffold_33 ensembl protein_coding_gene 270215 270667 . - . ID=Phyra78644;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000054;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 270215 270667 . - . ID=Phyra78644;Parent=Phyra78644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 270215 270667 . - 0 ID=Phyra78644;Parent=Phyra78644;rank=1 scaffold_33 . exon 270215 270667 . - . ID=Phyra78644.1;Parent=Phyra78644;constitutive=1;rank=1 scaffold_33 . repeat_region 284725 284733 . ? . description=dust scaffold_33 ensembl protein_coding_gene 287118 288152 . + . ID=Phyra78645;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000055;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 287118 288152 . + . ID=Phyra78645;Parent=Phyra78645;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 287118 287218 . + 0 ID=Phyra78645;Parent=Phyra78645;rank=1 scaffold_33 . exon 287118 287218 . + . ID=Phyra78645.1;Parent=Phyra78645;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 287249 287395 . + 0 ID=Phyra78645;Parent=Phyra78645;rank=2 scaffold_33 . exon 287249 287395 . + . ID=Phyra78645.2;Parent=Phyra78645;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_33 . CDS 287486 287688 . + 0 ID=Phyra78645;Parent=Phyra78645;rank=3 scaffold_33 . exon 287486 287688 . + . ID=Phyra78645.3;Parent=Phyra78645;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_33 . CDS 287785 288152 . + 0 ID=Phyra78645;Parent=Phyra78645;rank=4 scaffold_33 . exon 287785 288152 . + . ID=Phyra78645.4;Parent=Phyra78645;constitutive=1;ensembl_phase=1;rank=4 scaffold_33 . repeat_region 292028 292070 . ? . description=trf scaffold_33 . repeat_region 293675 293704 . ? . description=trf scaffold_33 . repeat_region 296120 296148 . ? . description=trf scaffold_33 . repeat_region 296539 296563 . ? . description=trf scaffold_33 ensembl protein_coding_gene 288627 289093 . - . ID=Phyra78646;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000056;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 288627 289093 . - . ID=Phyra78646;Parent=Phyra78646;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 288627 288902 . - 0 ID=Phyra78646;Parent=Phyra78646;rank=2 scaffold_33 . exon 288627 288902 . - . ID=Phyra78646.2;Parent=Phyra78646;constitutive=1;rank=2 scaffold_33 . CDS 288947 289093 . - 0 ID=Phyra78646;Parent=Phyra78646;rank=1 scaffold_33 . exon 288947 289093 . - . ID=Phyra78646.1;Parent=Phyra78646;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 295486 296602 . + . ID=Phyra78647;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000057;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 295486 296602 . + . ID=Phyra78647;Parent=Phyra78647;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 295486 295495 . + 0 ID=Phyra78647;Parent=Phyra78647;rank=1 scaffold_33 . exon 295486 295495 . + . ID=Phyra78647.1;Parent=Phyra78647;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 295610 295657 . + 0 ID=Phyra78647;Parent=Phyra78647;rank=2 scaffold_33 . exon 295610 295657 . + . ID=Phyra78647.2;Parent=Phyra78647;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 295725 296602 . + 0 ID=Phyra78647;Parent=Phyra78647;rank=3 scaffold_33 . exon 295725 296602 . + . ID=Phyra78647.3;Parent=Phyra78647;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 . biological_region 298528 298530 0.999 - . logic_name=eponine scaffold_33 . biological_region 298940 298948 0.999 + . logic_name=eponine scaffold_33 . biological_region 299065 299067 0.999 + . logic_name=eponine scaffold_33 . biological_region 299088 299090 0.999 + . logic_name=eponine scaffold_33 . biological_region 299156 299163 0.999 - . logic_name=eponine scaffold_33 . biological_region 301203 301204 0.999 + . logic_name=eponine scaffold_33 ensembl protein_coding_gene 298965 300533 . - . ID=Phyra78648;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000058;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 298965 300533 . - . ID=Phyra78648;Parent=Phyra78648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 298965 300533 . - 0 ID=Phyra78648;Parent=Phyra78648;rank=1 scaffold_33 . exon 298965 300533 . - . ID=Phyra78648.1;Parent=Phyra78648;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 300708 305819 . - . ID=Phyra78649;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000059;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 300708 305819 . - . ID=Phyra78649;Parent=Phyra78649;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 300708 305819 . - 0 ID=Phyra78649;Parent=Phyra78649;rank=1 scaffold_33 . exon 300708 305819 . - . ID=Phyra78649.1;Parent=Phyra78649;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 307455 309423 . - . ID=Phyra78650;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000060;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 307455 309423 . - . ID=Phyra78650;Parent=Phyra78650;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 307455 308560 . - 0 ID=Phyra78650;Parent=Phyra78650;rank=4 scaffold_33 . exon 307455 308560 . - . ID=Phyra78650.4;Parent=Phyra78650;constitutive=1;ensembl_phase=1;rank=4 scaffold_33 . CDS 308637 308903 . - 0 ID=Phyra78650;Parent=Phyra78650;rank=3 scaffold_33 . CDS 308967 309019 . - 0 ID=Phyra78650;Parent=Phyra78650;rank=2 scaffold_33 . CDS 309098 309423 . - 0 ID=Phyra78650;Parent=Phyra78650;rank=1 scaffold_33 . repeat_region 317250 317268 . ? . description=dust scaffold_33 ensembl protein_coding_gene 314739 316163 . - . ID=Phyra71642;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_33000003;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 314739 316163 . - . ID=Phyra71642;Parent=Phyra71642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 314739 316163 . - 0 ID=Phyra71642;Parent=Phyra71642;rank=1 scaffold_33 . exon 314739 316163 . - . ID=Phyra71642.1;Parent=Phyra71642;constitutive=1;rank=1 scaffold_33 . exon 308637 308903 . - . ID=Phyra78650.3;Parent=Phyra78650;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_33 . exon 308967 309019 . - . ID=Phyra78650.2;Parent=Phyra78650;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_33 . exon 309098 309423 . - . ID=Phyra78650.1;Parent=Phyra78650;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 ensembl protein_coding_gene 309989 313468 . + . ID=Phyra78651;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000061;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 309989 313468 . + . ID=Phyra78651;Parent=Phyra78651;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 309989 310331 . + 0 ID=Phyra78651;Parent=Phyra78651;rank=1 scaffold_33 . exon 309989 310331 . + . ID=Phyra78651.1;Parent=Phyra78651;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 310432 310918 . + 0 ID=Phyra78651;Parent=Phyra78651;rank=2 scaffold_33 . exon 310432 310918 . + . ID=Phyra78651.2;Parent=Phyra78651;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_33 . CDS 310945 311374 . + 0 ID=Phyra78651;Parent=Phyra78651;rank=3 scaffold_33 . exon 310945 311374 . + . ID=Phyra78651.3;Parent=Phyra78651;constitutive=1;ensembl_phase=2;rank=3 scaffold_33 . CDS 311599 312603 . + 0 ID=Phyra78651;Parent=Phyra78651;rank=4 scaffold_33 . exon 311599 312603 . + . ID=Phyra78651.4;Parent=Phyra78651;constitutive=1;rank=4 scaffold_33 . CDS 312671 313468 . + 0 ID=Phyra78651;Parent=Phyra78651;rank=5 scaffold_33 . exon 312671 313468 . + . ID=Phyra78651.5;Parent=Phyra78651;constitutive=1;rank=5 scaffold_33 ensembl protein_coding_gene 314225 314629 . + . ID=Phyra78652;biotype=protein_coding;description=Elicitin-like protein RAL4 [Source:UniProtKB/TrEMBL%3BAcc:Q2N0B5];external_name=fgenesh1_pg.C_scaffold_33000062;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 314225 314629 . + . ID=Phyra78652;Parent=Phyra78652;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 314225 314629 . + 0 ID=Phyra78652;Parent=Phyra78652;rank=1 scaffold_33 . exon 314225 314629 . + . ID=Phyra78652.1;Parent=Phyra78652;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 317313 319094 . - . ID=Phyra95180;biotype=protein_coding;external_name=C_scaffold_33000019;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 317313 319094 . - . ID=Phyra95180;Parent=Phyra95180;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 317313 318228 . - 0 ID=Phyra95180;Parent=Phyra95180;rank=2 scaffold_33 . exon 317313 318228 . - . ID=Phyra95180.2;Parent=Phyra95180;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 318310 319094 . - 0 ID=Phyra95180;Parent=Phyra95180;rank=1 scaffold_33 . biological_region 324092 324095 0.999 + . logic_name=eponine scaffold_33 . biological_region 324122 324127 0.999 + . logic_name=eponine scaffold_33 . biological_region 324166 324169 0.999 + . logic_name=eponine scaffold_33 . biological_region 324190 324195 0.999 - . logic_name=eponine scaffold_33 . biological_region 325118 325119 0.999 + . logic_name=eponine scaffold_33 . biological_region 325226 325228 0.999 + . logic_name=eponine scaffold_33 . biological_region 325546 325550 0.999 + . logic_name=eponine scaffold_33 . biological_region 325614 325616 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 321000 324476 . - . ID=Phyra71643;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_33000004;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 321000 324476 . - . ID=Phyra71643;Parent=Phyra71643;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 321000 324476 . - 0 ID=Phyra71643;Parent=Phyra71643;rank=1 scaffold_33 . exon 321000 324476 . - . ID=Phyra71643.1;Parent=Phyra71643;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 324795 325912 . - . ID=Phyra78656;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000066;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 324795 325912 . - . ID=Phyra78656;Parent=Phyra78656;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 324795 325379 . - 0 ID=Phyra78656;Parent=Phyra78656;rank=2 scaffold_33 . exon 324795 325379 . - . ID=Phyra78656.2;Parent=Phyra78656;constitutive=1;rank=2 scaffold_33 . CDS 325454 325912 . - 0 ID=Phyra78656;Parent=Phyra78656;rank=1 scaffold_33 . exon 325454 325912 . - . ID=Phyra78656.1;Parent=Phyra78656;constitutive=1;rank=1 scaffold_33 . exon 318310 319094 . - . ID=Phyra95180.1;Parent=Phyra95180;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . repeat_region 335485 335492 . ? . description=dust scaffold_33 . repeat_region 335505 335523 . ? . description=dust scaffold_33 . repeat_region 335505 335532 . ? . description=trf scaffold_33 . repeat_region 337213 337222 . ? . description=dust scaffold_33 . biological_region 347129 347130 0.999 + . logic_name=eponine scaffold_33 . biological_region 347228 347230 0.999 - . logic_name=eponine scaffold_33 . biological_region 347299 347303 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 337807 339401 . + . ID=Phyra78657;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000067;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 337807 339401 . + . ID=Phyra78657;Parent=Phyra78657;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 337807 337875 . + 0 ID=Phyra78657;Parent=Phyra78657;rank=1 scaffold_33 . exon 337807 337875 . + . ID=Phyra78657.1;Parent=Phyra78657;constitutive=1;rank=1 scaffold_33 . CDS 337943 338090 . + 0 ID=Phyra78657;Parent=Phyra78657;rank=2 scaffold_33 . exon 337943 338090 . + . ID=Phyra78657.2;Parent=Phyra78657;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_33 . CDS 338152 338234 . + 0 ID=Phyra78657;Parent=Phyra78657;rank=3 scaffold_33 . exon 338152 338234 . + . ID=Phyra78657.3;Parent=Phyra78657;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 . CDS 338268 338343 . + 0 ID=Phyra78657;Parent=Phyra78657;rank=4 scaffold_33 . exon 338268 338343 . + . ID=Phyra78657.4;Parent=Phyra78657;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_33 . CDS 338416 338503 . + 0 ID=Phyra78657;Parent=Phyra78657;rank=5 scaffold_33 . exon 338416 338503 . + . ID=Phyra78657.5;Parent=Phyra78657;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_33 . CDS 338569 338720 . + 0 ID=Phyra78657;Parent=Phyra78657;rank=6 scaffold_33 . exon 338569 338720 . + . ID=Phyra78657.6;Parent=Phyra78657;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_33 . CDS 338791 339401 . + 0 ID=Phyra78657;Parent=Phyra78657;rank=7 scaffold_33 . exon 338791 339401 . + . ID=Phyra78657.7;Parent=Phyra78657;constitutive=1;ensembl_phase=1;rank=7 scaffold_33 ensembl protein_coding_gene 343715 345178 . - . ID=Phyra78659;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000069;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 343715 345178 . - . ID=Phyra78659;Parent=Phyra78659;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 343715 345178 . - 0 ID=Phyra78659;Parent=Phyra78659;rank=1 scaffold_33 . exon 343715 345178 . - . ID=Phyra78659.1;Parent=Phyra78659;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 339472 343632 . - . ID=Phyra95182;biotype=protein_coding;external_name=C_scaffold_33000021;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 339472 343632 . - . ID=Phyra95182;Parent=Phyra95182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 339472 339653 . - 0 ID=Phyra95182;Parent=Phyra95182;rank=7 scaffold_33 . exon 339472 339653 . - . ID=Phyra95182.7;Parent=Phyra95182;constitutive=1;ensembl_phase=1;rank=7 scaffold_33 . CDS 339762 340451 . - 0 ID=Phyra95182;Parent=Phyra95182;rank=6 scaffold_33 . exon 339762 340451 . - . ID=Phyra95182.6;Parent=Phyra95182;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_33 . CDS 340776 341049 . - 0 ID=Phyra95182;Parent=Phyra95182;rank=5 scaffold_33 . exon 340776 341049 . - . ID=Phyra95182.5;Parent=Phyra95182;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_33 . CDS 341365 341565 . - 0 ID=Phyra95182;Parent=Phyra95182;rank=4 scaffold_33 . exon 341365 341565 . - . ID=Phyra95182.4;Parent=Phyra95182;constitutive=1;rank=4 scaffold_33 . CDS 341602 342413 . - 0 ID=Phyra95182;Parent=Phyra95182;rank=3 scaffold_33 . exon 341602 342413 . - . ID=Phyra95182.3;Parent=Phyra95182;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 . CDS 342636 342924 . - 0 ID=Phyra95182;Parent=Phyra95182;rank=2 scaffold_33 . exon 342636 342924 . - . ID=Phyra95182.2;Parent=Phyra95182;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_33 . CDS 343174 343632 . - 0 ID=Phyra95182;Parent=Phyra95182;rank=1 scaffold_33 . exon 343174 343632 . - . ID=Phyra95182.1;Parent=Phyra95182;constitutive=1;rank=1 scaffold_33 . repeat_region 349544 349625 . ? . description=trf scaffold_33 . repeat_region 349544 349625 . ? . description=dust scaffold_33 . repeat_region 350279 350377 . ? . description=trf scaffold_33 . repeat_region 350279 350379 . ? . description=trf scaffold_33 . repeat_region 350279 350398 . ? . description=trf scaffold_33 . repeat_region 352191 352198 . ? . description=dust scaffold_33 ensembl protein_coding_gene 347506 348489 . + . ID=Phyra78660;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000070;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 347506 348489 . + . ID=Phyra78660;Parent=Phyra78660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 347506 348489 . + 0 ID=Phyra78660;Parent=Phyra78660;rank=1 scaffold_33 . exon 347506 348489 . + . ID=Phyra78660.1;Parent=Phyra78660;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 349478 351490 . - . ID=Phyra78661;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000071;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 349478 351490 . - . ID=Phyra78661;Parent=Phyra78661;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 349478 351490 . - 0 ID=Phyra78661;Parent=Phyra78661;rank=1 scaffold_33 . exon 349478 351490 . - . ID=Phyra78661.1;Parent=Phyra78661;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 352139 353911 . - . ID=Phyra78662;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000072;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 352139 353911 . - . ID=Phyra78662;Parent=Phyra78662;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 352139 353911 . - 0 ID=Phyra78662;Parent=Phyra78662;rank=1 scaffold_33 . exon 352139 353911 . - . ID=Phyra78662.1;Parent=Phyra78662;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 354257 356164 . - . ID=Phyra78663;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000073;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 354257 356164 . - . ID=Phyra78663;Parent=Phyra78663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 354257 356164 . - 0 ID=Phyra78663;Parent=Phyra78663;rank=1 scaffold_33 . exon 354257 356164 . - . ID=Phyra78663.1;Parent=Phyra78663;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 357361 359139 . - . ID=Phyra78664;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000074;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 357361 359139 . - . ID=Phyra78664;Parent=Phyra78664;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 357361 359139 . - 0 ID=Phyra78664;Parent=Phyra78664;rank=1 scaffold_33 . exon 357361 359139 . - . ID=Phyra78664.1;Parent=Phyra78664;constitutive=1;rank=1 scaffold_33 . biological_region 372296 372297 0.999 - . logic_name=eponine scaffold_33 . biological_region 374390 374390 0.999 + . logic_name=eponine scaffold_33 . biological_region 375905 375905 0.999 + . logic_name=eponine scaffold_33 . repeat_region 376273 376285 . ? . description=dust scaffold_33 ensembl protein_coding_gene 376086 377690 . - . ID=Phyra78667;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000077;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 376086 377690 . - . ID=Phyra78667;Parent=Phyra78667;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 376086 376262 . - 0 ID=Phyra78667;Parent=Phyra78667;rank=4 scaffold_33 . exon 376086 376262 . - . ID=Phyra78667.4;Parent=Phyra78667;constitutive=1;rank=4 scaffold_33 . CDS 376339 377165 . - 0 ID=Phyra78667;Parent=Phyra78667;rank=3 scaffold_33 . exon 376339 377165 . - . ID=Phyra78667.3;Parent=Phyra78667;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 . CDS 377260 377488 . - 0 ID=Phyra78667;Parent=Phyra78667;rank=2 scaffold_33 . CDS 377562 377690 . - 0 ID=Phyra78667;Parent=Phyra78667;rank=1 scaffold_33 ensembl protein_coding_gene 370978 375798 . + . ID=Phyra95184;biotype=protein_coding;external_name=C_scaffold_33000023;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 370978 375798 . + . ID=Phyra95184;Parent=Phyra95184;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 370978 371329 . + 0 ID=Phyra95184;Parent=Phyra95184;rank=1 scaffold_33 . exon 370978 371329 . + . ID=Phyra95184.1;Parent=Phyra95184;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 371847 371984 . + 0 ID=Phyra95184;Parent=Phyra95184;rank=2 scaffold_33 . exon 371847 371984 . + . ID=Phyra95184.2;Parent=Phyra95184;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 372342 372718 . + 0 ID=Phyra95184;Parent=Phyra95184;rank=3 scaffold_33 . exon 372342 372718 . + . ID=Phyra95184.3;Parent=Phyra95184;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 . CDS 373250 373271 . + 0 ID=Phyra95184;Parent=Phyra95184;rank=4 scaffold_33 . exon 373250 373271 . + . ID=Phyra95184.4;Parent=Phyra95184;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_33 . CDS 373336 373617 . + 0 ID=Phyra95184;Parent=Phyra95184;rank=5 scaffold_33 . exon 373336 373617 . + . ID=Phyra95184.5;Parent=Phyra95184;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_33 . CDS 373725 373752 . + 0 ID=Phyra95184;Parent=Phyra95184;rank=6 scaffold_33 . exon 373725 373752 . + . ID=Phyra95184.6;Parent=Phyra95184;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_33 . CDS 374008 375123 . + 0 ID=Phyra95184;Parent=Phyra95184;rank=7 scaffold_33 . exon 374008 375123 . + . ID=Phyra95184.7;Parent=Phyra95184;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_33 . CDS 375163 375317 . + 0 ID=Phyra95184;Parent=Phyra95184;rank=8 scaffold_33 . exon 375163 375317 . + . ID=Phyra95184.8;Parent=Phyra95184;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_33 . CDS 375393 375674 . + 0 ID=Phyra95184;Parent=Phyra95184;rank=9 scaffold_33 . exon 375393 375674 . + . ID=Phyra95184.9;Parent=Phyra95184;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_33 . CDS 375737 375798 . + 0 ID=Phyra95184;Parent=Phyra95184;rank=10 scaffold_33 . exon 375737 375798 . + . ID=Phyra95184.10;Parent=Phyra95184;constitutive=1;ensembl_phase=1;rank=10 scaffold_33 . exon 377260 377488 . - . ID=Phyra78667.2;Parent=Phyra78667;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_33 . exon 377562 377690 . - . ID=Phyra78667.1;Parent=Phyra78667;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 377906 378721 . + . ID=Phyra78668;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000078;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 377906 378721 . + . ID=Phyra78668;Parent=Phyra78668;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 377906 378046 . + 0 ID=Phyra78668;Parent=Phyra78668;rank=1 scaffold_33 . exon 377906 378046 . + . ID=Phyra78668.1;Parent=Phyra78668;constitutive=1;rank=1 scaffold_33 . CDS 378105 378177 . + 0 ID=Phyra78668;Parent=Phyra78668;rank=2 scaffold_33 . exon 378105 378177 . + . ID=Phyra78668.2;Parent=Phyra78668;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_33 . CDS 378243 378721 . + 0 ID=Phyra78668;Parent=Phyra78668;rank=3 scaffold_33 . exon 378243 378721 . + . ID=Phyra78668.3;Parent=Phyra78668;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 ensembl protein_coding_gene 386815 388754 . - . ID=Phyra78672;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000082;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 386815 388754 . - . ID=Phyra78672;Parent=Phyra78672;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 386815 388206 . - 0 ID=Phyra78672;Parent=Phyra78672;rank=3 scaffold_33 . exon 386815 388206 . - . ID=Phyra78672.3;Parent=Phyra78672;constitutive=1;rank=3 scaffold_33 . CDS 388265 388357 . - 0 ID=Phyra78672;Parent=Phyra78672;rank=2 scaffold_33 . CDS 388428 388754 . - 0 ID=Phyra78672;Parent=Phyra78672;rank=1 scaffold_33 ensembl protein_coding_gene 381697 385045 . + . ID=Phyra95186;biotype=protein_coding;external_name=C_scaffold_33000025;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 381697 385045 . + . ID=Phyra95186;Parent=Phyra95186;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 381697 381828 . + 0 ID=Phyra95186;Parent=Phyra95186;rank=1 scaffold_33 . exon 381697 381828 . + . ID=Phyra95186.1;Parent=Phyra95186;constitutive=1;rank=1 scaffold_33 . CDS 381853 382212 . + 0 ID=Phyra95186;Parent=Phyra95186;rank=2 scaffold_33 . exon 381853 382212 . + . ID=Phyra95186.2;Parent=Phyra95186;constitutive=1;rank=2 scaffold_33 . CDS 382288 382422 . + 0 ID=Phyra95186;Parent=Phyra95186;rank=3 scaffold_33 . exon 382288 382422 . + . ID=Phyra95186.3;Parent=Phyra95186;constitutive=1;rank=3 scaffold_33 . CDS 382444 382701 . + 0 ID=Phyra95186;Parent=Phyra95186;rank=4 scaffold_33 . exon 382444 382701 . + . ID=Phyra95186.4;Parent=Phyra95186;constitutive=1;rank=4 scaffold_33 . CDS 382975 383422 . + 0 ID=Phyra95186;Parent=Phyra95186;rank=5 scaffold_33 . exon 382975 383422 . + . ID=Phyra95186.5;Parent=Phyra95186;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_33 . CDS 383487 383579 . + 0 ID=Phyra95186;Parent=Phyra95186;rank=6 scaffold_33 . exon 383487 383579 . + . ID=Phyra95186.6;Parent=Phyra95186;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_33 . CDS 383636 384227 . + 0 ID=Phyra95186;Parent=Phyra95186;rank=7 scaffold_33 . exon 383636 384227 . + . ID=Phyra95186.7;Parent=Phyra95186;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_33 . CDS 384287 384386 . + 0 ID=Phyra95186;Parent=Phyra95186;rank=8 scaffold_33 . exon 384287 384386 . + . ID=Phyra95186.8;Parent=Phyra95186;constitutive=1;ensembl_phase=2;rank=8 scaffold_33 . CDS 384449 385045 . + 0 ID=Phyra95186;Parent=Phyra95186;rank=9 scaffold_33 . exon 384449 385045 . + . ID=Phyra95186.9;Parent=Phyra95186;constitutive=1;rank=9 scaffold_33 ensembl protein_coding_gene 386274 386609 . + . ID=Phyra95187;biotype=protein_coding;external_name=C_scaffold_33000026;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 386274 386609 . + . ID=Phyra95187;Parent=Phyra95187;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 386274 386609 . + 0 ID=Phyra95187;Parent=Phyra95187;rank=1 scaffold_33 . exon 386274 386609 . + . ID=Phyra95187.1;Parent=Phyra95187;constitutive=1;rank=1 scaffold_33 . repeat_region 388840 388847 . ? . description=dust scaffold_33 . biological_region 388993 388997 0.999 - . logic_name=eponine scaffold_33 . biological_region 389069 389069 0.999 - . logic_name=eponine scaffold_33 . repeat_region 390320 390327 . ? . description=dust scaffold_33 . repeat_region 394031 394060 . ? . description=trf scaffold_33 . repeat_region 394232 394239 . ? . description=dust scaffold_33 . repeat_region 395806 395834 . ? . description=trf scaffold_33 . exon 388265 388357 . - . ID=Phyra78672.2;Parent=Phyra78672;constitutive=1;rank=2 scaffold_33 . exon 388428 388754 . - . ID=Phyra78672.1;Parent=Phyra78672;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 388877 390127 . + . ID=Phyra78673;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000083;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 388877 390127 . + . ID=Phyra78673;Parent=Phyra78673;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 388877 390127 . + 0 ID=Phyra78673;Parent=Phyra78673;rank=1 scaffold_33 . exon 388877 390127 . + . ID=Phyra78673.1;Parent=Phyra78673;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 403919 406078 . - . ID=Phyra71644;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_33000005;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 403919 406078 . - . ID=Phyra71644;Parent=Phyra71644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 403919 404083 . - 0 ID=Phyra71644;Parent=Phyra71644;rank=2 scaffold_33 . exon 403919 404083 . - . ID=Phyra71644.2;Parent=Phyra71644;constitutive=1;rank=2 scaffold_33 . CDS 404162 406078 . - 0 ID=Phyra71644;Parent=Phyra71644;rank=1 scaffold_33 . exon 404162 406078 . - . ID=Phyra71644.1;Parent=Phyra71644;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 399117 399566 . + . ID=Phyra78674;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000084;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 399117 399566 . + . ID=Phyra78674;Parent=Phyra78674;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 399117 399566 . + 0 ID=Phyra78674;Parent=Phyra78674;rank=1 scaffold_33 . exon 399117 399566 . + . ID=Phyra78674.1;Parent=Phyra78674;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 401022 402026 . + . ID=Phyra78675;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000085;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 401022 402026 . + . ID=Phyra78675;Parent=Phyra78675;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 401022 401055 . + 0 ID=Phyra78675;Parent=Phyra78675;rank=1 scaffold_33 . exon 401022 401055 . + . ID=Phyra78675.1;Parent=Phyra78675;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 401119 401804 . + 0 ID=Phyra78675;Parent=Phyra78675;rank=2 scaffold_33 . exon 401119 401804 . + . ID=Phyra78675.2;Parent=Phyra78675;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 401982 402026 . + 0 ID=Phyra78675;Parent=Phyra78675;rank=3 scaffold_33 . exon 401982 402026 . + . ID=Phyra78675.3;Parent=Phyra78675;constitutive=1;rank=3 scaffold_33 ensembl protein_coding_gene 402228 403694 . - . ID=Phyra78676;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000086;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 402228 403694 . - . ID=Phyra78676;Parent=Phyra78676;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 402228 403585 . - 0 ID=Phyra78676;Parent=Phyra78676;rank=2 scaffold_33 . exon 402228 403585 . - . ID=Phyra78676.2;Parent=Phyra78676;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 403628 403694 . - 0 ID=Phyra78676;Parent=Phyra78676;rank=1 scaffold_33 . exon 403628 403694 . - . ID=Phyra78676.1;Parent=Phyra78676;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . repeat_region 412572 412602 . ? . description=trf scaffold_33 . biological_region 416501 416506 0.999 + . logic_name=eponine scaffold_33 ensembl protein_coding_gene 407089 408924 . + . ID=Phyra78678;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000088;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 407089 408924 . + . ID=Phyra78678;Parent=Phyra78678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 407089 408924 . + 0 ID=Phyra78678;Parent=Phyra78678;rank=1 scaffold_33 . exon 407089 408924 . + . ID=Phyra78678.1;Parent=Phyra78678;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 409432 409794 . - . ID=Phyra78679;biotype=protein_coding;description=Elicitin-like protein RAL10AElicitin-like protein RAL10B [Source:UniProtKB/TrEMBL%3BAcc:Q2N0D6];external_name=fgenesh1_pg.C_scaffold_33000089;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 409432 409794 . - . ID=Phyra78679;Parent=Phyra78679;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 409432 409794 . - 0 ID=Phyra78679;Parent=Phyra78679;rank=1 scaffold_33 . exon 409432 409794 . - . ID=Phyra78679.1;Parent=Phyra78679;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 411601 412448 . - . ID=Phyra78681;biotype=protein_coding;description=Elicitin-like protein RAL9 [Source:UniProtKB/TrEMBL%3BAcc:Q2N0A8];external_name=fgenesh1_pg.C_scaffold_33000091;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 411601 412448 . - . ID=Phyra78681;Parent=Phyra78681;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 411601 411985 . - 0 ID=Phyra78681;Parent=Phyra78681;rank=2 scaffold_33 . exon 411601 411985 . - . ID=Phyra78681.2;Parent=Phyra78681;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 412297 412448 . - 0 ID=Phyra78681;Parent=Phyra78681;rank=1 scaffold_33 . exon 412297 412448 . - . ID=Phyra78681.1;Parent=Phyra78681;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 ensembl protein_coding_gene 411140 411412 . + . ID=Phyra95189;biotype=protein_coding;external_name=C_scaffold_33000028;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 411140 411412 . + . ID=Phyra95189;Parent=Phyra95189;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 411140 411412 . + 0 ID=Phyra95189;Parent=Phyra95189;rank=1 scaffold_33 . exon 411140 411412 . + . ID=Phyra95189.1;Parent=Phyra95189;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 414243 414929 . - . ID=Phyra95193;biotype=protein_coding;external_name=C_scaffold_33000032;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 414243 414929 . - . ID=Phyra95193;Parent=Phyra95193;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 414243 414929 . - 0 ID=Phyra95193;Parent=Phyra95193;rank=1 scaffold_33 . exon 414243 414929 . - . ID=Phyra95193.1;Parent=Phyra95193;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 416709 417930 . + . ID=Phyra95195;biotype=protein_coding;external_name=C_scaffold_33000034;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 416709 417930 . + . ID=Phyra95195;Parent=Phyra95195;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 416709 416878 . + 0 ID=Phyra95195;Parent=Phyra95195;rank=1 scaffold_33 . exon 416709 416878 . + . ID=Phyra95195.1;Parent=Phyra95195;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 417142 417251 . + 0 ID=Phyra95195;Parent=Phyra95195;rank=2 scaffold_33 . CDS 417319 417401 . + 0 ID=Phyra95195;Parent=Phyra95195;rank=3 scaffold_33 . CDS 417459 417537 . + 0 ID=Phyra95195;Parent=Phyra95195;rank=4 scaffold_33 . CDS 417614 417930 . + 0 ID=Phyra95195;Parent=Phyra95195;rank=5 scaffold_33 ensembl protein_coding_gene 423234 424079 . - . ID=Phyra78686;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000096;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 423234 424079 . - . ID=Phyra78686;Parent=Phyra78686;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 423234 424079 . - 0 ID=Phyra78686;Parent=Phyra78686;rank=1 scaffold_33 . exon 423234 424079 . - . ID=Phyra78686.1;Parent=Phyra78686;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 425928 427206 . - . ID=Phyra78687;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000097;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 425928 427206 . - . ID=Phyra78687;Parent=Phyra78687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 425928 426092 . - 0 ID=Phyra78687;Parent=Phyra78687;rank=4 scaffold_33 . exon 425928 426092 . - . ID=Phyra78687.4;Parent=Phyra78687;constitutive=1;rank=4 scaffold_33 . CDS 426153 426863 . - 0 ID=Phyra78687;Parent=Phyra78687;rank=3 scaffold_33 . exon 426153 426863 . - . ID=Phyra78687.3;Parent=Phyra78687;constitutive=1;rank=3 scaffold_33 . CDS 426948 427046 . - 0 ID=Phyra78687;Parent=Phyra78687;rank=2 scaffold_33 . CDS 427138 427206 . - 0 ID=Phyra78687;Parent=Phyra78687;rank=1 scaffold_33 . exon 417142 417251 . + . ID=Phyra95195.2;Parent=Phyra95195;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_33 . exon 417319 417401 . + . ID=Phyra95195.3;Parent=Phyra95195;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 . exon 417459 417537 . + . ID=Phyra95195.4;Parent=Phyra95195;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_33 . exon 417614 417930 . + . ID=Phyra95195.5;Parent=Phyra95195;constitutive=1;ensembl_phase=1;rank=5 scaffold_33 ensembl protein_coding_gene 418184 422424 . - . ID=Phyra95198;biotype=protein_coding;external_name=C_scaffold_33000037;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 418184 422424 . - . ID=Phyra95198;Parent=Phyra95198;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 418184 419308 . - 0 ID=Phyra95198;Parent=Phyra95198;rank=11 scaffold_33 . exon 418184 419308 . - . ID=Phyra95198.11;Parent=Phyra95198;constitutive=1;rank=11 scaffold_33 . CDS 419370 419442 . - 0 ID=Phyra95198;Parent=Phyra95198;rank=10 scaffold_33 . exon 419370 419442 . - . ID=Phyra95198.10;Parent=Phyra95198;constitutive=1;ensembl_phase=2;rank=10 scaffold_33 . CDS 419525 420097 . - 0 ID=Phyra95198;Parent=Phyra95198;rank=9 scaffold_33 . exon 419525 420097 . - . ID=Phyra95198.9;Parent=Phyra95198;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_33 . CDS 420170 420282 . - 0 ID=Phyra95198;Parent=Phyra95198;rank=8 scaffold_33 . exon 420170 420282 . - . ID=Phyra95198.8;Parent=Phyra95198;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_33 . CDS 420347 420586 . - 0 ID=Phyra95198;Parent=Phyra95198;rank=7 scaffold_33 . exon 420347 420586 . - . ID=Phyra95198.7;Parent=Phyra95198;constitutive=1;rank=7 scaffold_33 . CDS 420791 421128 . - 0 ID=Phyra95198;Parent=Phyra95198;rank=6 scaffold_33 . exon 420791 421128 . - . ID=Phyra95198.6;Parent=Phyra95198;constitutive=1;ensembl_phase=1;rank=6 scaffold_33 . CDS 421156 421288 . - 0 ID=Phyra95198;Parent=Phyra95198;rank=5 scaffold_33 . exon 421156 421288 . - . ID=Phyra95198.5;Parent=Phyra95198;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_33 . CDS 421318 421434 . - 0 ID=Phyra95198;Parent=Phyra95198;rank=4 scaffold_33 . exon 421318 421434 . - . ID=Phyra95198.4;Parent=Phyra95198;constitutive=1;rank=4 scaffold_33 . CDS 421615 421618 . - 0 ID=Phyra95198;Parent=Phyra95198;rank=3 scaffold_33 . exon 421615 421618 . - . ID=Phyra95198.3;Parent=Phyra95198;constitutive=1;ensembl_phase=2;rank=3 scaffold_33 . CDS 421686 422249 . - 0 ID=Phyra95198;Parent=Phyra95198;rank=2 scaffold_33 . exon 421686 422249 . - . ID=Phyra95198.2;Parent=Phyra95198;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_33 . CDS 422336 422424 . - 0 ID=Phyra95198;Parent=Phyra95198;rank=1 scaffold_33 . exon 422336 422424 . - . ID=Phyra95198.1;Parent=Phyra95198;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . biological_region 429851 429853 0.999 - . logic_name=eponine scaffold_33 . repeat_region 430182 430312 . ? . description=trf scaffold_33 . repeat_region 432148 432155 . ? . description=dust scaffold_33 . biological_region 433961 433964 0.999 - . logic_name=eponine scaffold_33 . biological_region 434360 434362 0.999 - . logic_name=eponine scaffold_33 . biological_region 436496 436498 0.999 + . logic_name=eponine scaffold_33 . exon 426948 427046 . - . ID=Phyra78687.2;Parent=Phyra78687;constitutive=1;rank=2 scaffold_33 . exon 427138 427206 . - . ID=Phyra78687.1;Parent=Phyra78687;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 427485 428402 . + . ID=Phyra78688;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000098;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 427485 428402 . + . ID=Phyra78688;Parent=Phyra78688;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 427485 428402 . + 0 ID=Phyra78688;Parent=Phyra78688;rank=1 scaffold_33 . exon 427485 428402 . + . ID=Phyra78688.1;Parent=Phyra78688;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 430076 431030 . - . ID=Phyra78689;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000099;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 430076 431030 . - . ID=Phyra78689;Parent=Phyra78689;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 430076 430407 . - 0 ID=Phyra78689;Parent=Phyra78689;rank=2 scaffold_33 . exon 430076 430407 . - . ID=Phyra78689.2;Parent=Phyra78689;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 430472 431030 . - 0 ID=Phyra78689;Parent=Phyra78689;rank=1 scaffold_33 . exon 430472 431030 . - . ID=Phyra78689.1;Parent=Phyra78689;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 ensembl protein_coding_gene 432736 434028 . - . ID=Phyra78690;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000100;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 432736 434028 . - . ID=Phyra78690;Parent=Phyra78690;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 432736 432974 . - 0 ID=Phyra78690;Parent=Phyra78690;rank=5 scaffold_33 . exon 432736 432974 . - . ID=Phyra78690.5;Parent=Phyra78690;constitutive=1;ensembl_phase=1;rank=5 scaffold_33 . CDS 433064 433169 . - 0 ID=Phyra78690;Parent=Phyra78690;rank=4 scaffold_33 . exon 433064 433169 . - . ID=Phyra78690.4;Parent=Phyra78690;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_33 . CDS 433244 433421 . - 0 ID=Phyra78690;Parent=Phyra78690;rank=3 scaffold_33 . exon 433244 433421 . - . ID=Phyra78690.3;Parent=Phyra78690;constitutive=1;ensembl_phase=2;rank=3 scaffold_33 . CDS 433497 433648 . - 0 ID=Phyra78690;Parent=Phyra78690;rank=2 scaffold_33 . exon 433497 433648 . - . ID=Phyra78690.2;Parent=Phyra78690;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_33 . CDS 433861 434028 . - 0 ID=Phyra78690;Parent=Phyra78690;rank=1 scaffold_33 . exon 433861 434028 . - . ID=Phyra78690.1;Parent=Phyra78690;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 434475 436164 . + . ID=Phyra78691;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000101;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 434475 436164 . + . ID=Phyra78691;Parent=Phyra78691;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 434475 435362 . + 0 ID=Phyra78691;Parent=Phyra78691;rank=1 scaffold_33 . exon 434475 435362 . + . ID=Phyra78691.1;Parent=Phyra78691;constitutive=1;rank=1 scaffold_33 . CDS 435400 435408 . + 0 ID=Phyra78691;Parent=Phyra78691;rank=2 scaffold_33 . exon 435400 435408 . + . ID=Phyra78691.2;Parent=Phyra78691;constitutive=1;rank=2 scaffold_33 . CDS 435442 435458 . + 0 ID=Phyra78691;Parent=Phyra78691;rank=3 scaffold_33 . exon 435442 435458 . + . ID=Phyra78691.3;Parent=Phyra78691;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_33 . CDS 435531 435757 . + 0 ID=Phyra78691;Parent=Phyra78691;rank=4 scaffold_33 . exon 435531 435757 . + . ID=Phyra78691.4;Parent=Phyra78691;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_33 . CDS 435824 436164 . + 0 ID=Phyra78691;Parent=Phyra78691;rank=5 scaffold_33 . exon 435824 436164 . + . ID=Phyra78691.5;Parent=Phyra78691;constitutive=1;ensembl_phase=1;rank=5 scaffold_33 ensembl protein_coding_gene 436323 439508 . - . ID=Phyra78692;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000102;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 436323 439508 . - . ID=Phyra78692;Parent=Phyra78692;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 436323 439508 . - 0 ID=Phyra78692;Parent=Phyra78692;rank=1 scaffold_33 . exon 436323 439508 . - . ID=Phyra78692.1;Parent=Phyra78692;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 440119 440778 . - . ID=Phyra71646;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_33000007;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 440119 440778 . - . ID=Phyra71646;Parent=Phyra71646;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 440119 440662 . - 0 ID=Phyra71646;Parent=Phyra71646;rank=2 scaffold_33 . exon 440119 440662 . - . ID=Phyra71646.2;Parent=Phyra71646;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 440747 440778 . - 0 ID=Phyra71646;Parent=Phyra71646;rank=1 scaffold_33 . exon 440747 440778 . - . ID=Phyra71646.1;Parent=Phyra71646;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 ensembl protein_coding_gene 441119 444071 . + . ID=Phyra78694;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000104;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 441119 444071 . + . ID=Phyra78694;Parent=Phyra78694;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 441119 441301 . + 0 ID=Phyra78694;Parent=Phyra78694;rank=1 scaffold_33 . exon 441119 441301 . + . ID=Phyra78694.1;Parent=Phyra78694;constitutive=1;rank=1 scaffold_33 . CDS 441366 441848 . + 0 ID=Phyra78694;Parent=Phyra78694;rank=2 scaffold_33 . exon 441366 441848 . + . ID=Phyra78694.2;Parent=Phyra78694;constitutive=1;rank=2 scaffold_33 . CDS 441914 442066 . + 0 ID=Phyra78694;Parent=Phyra78694;rank=3 scaffold_33 . exon 441914 442066 . + . ID=Phyra78694.3;Parent=Phyra78694;constitutive=1;rank=3 scaffold_33 . CDS 442131 442547 . + 0 ID=Phyra78694;Parent=Phyra78694;rank=4 scaffold_33 . exon 442131 442547 . + . ID=Phyra78694.4;Parent=Phyra78694;constitutive=1;rank=4 scaffold_33 . CDS 442950 444071 . + 0 ID=Phyra78694;Parent=Phyra78694;rank=5 scaffold_33 . exon 442950 444071 . + . ID=Phyra78694.5;Parent=Phyra78694;constitutive=1;rank=5 scaffold_33 ensembl protein_coding_gene 445742 446860 . + . ID=Phyra78695;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000105;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 445742 446860 . + . ID=Phyra78695;Parent=Phyra78695;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 445742 446860 . + 0 ID=Phyra78695;Parent=Phyra78695;rank=1 scaffold_33 . exon 445742 446860 . + . ID=Phyra78695.1;Parent=Phyra78695;constitutive=1;rank=1 scaffold_33 . biological_region 446884 446890 0.999 + . logic_name=eponine scaffold_33 . biological_region 446887 446889 0.999 - . logic_name=eponine scaffold_33 . repeat_region 446897 446934 . ? . description=dust scaffold_33 . biological_region 446939 446945 0.999 + . logic_name=eponine scaffold_33 . biological_region 454429 454430 0.999 + . logic_name=eponine scaffold_33 . biological_region 454492 454495 0.999 + . logic_name=eponine scaffold_33 . repeat_region 455074 455086 . ? . description=dust scaffold_33 . biological_region 455485 455488 0.999 - . logic_name=eponine scaffold_33 . repeat_region 455527 455570 . ? . description=dust scaffold_33 . repeat_region 455540 455570 . ? . description=trf scaffold_33 ensembl protein_coding_gene 448478 449773 . - . ID=Phyra78696;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000106;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 448478 449773 . - . ID=Phyra78696;Parent=Phyra78696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 448478 448557 . - 0 ID=Phyra78696;Parent=Phyra78696;rank=5 scaffold_33 . exon 448478 448557 . - . ID=Phyra78696.5;Parent=Phyra78696;constitutive=1;ensembl_phase=1;rank=5 scaffold_33 . CDS 448755 448776 . - 0 ID=Phyra78696;Parent=Phyra78696;rank=4 scaffold_33 . exon 448755 448776 . - . ID=Phyra78696.4;Parent=Phyra78696;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_33 . CDS 448881 448981 . - 0 ID=Phyra78696;Parent=Phyra78696;rank=3 scaffold_33 . exon 448881 448981 . - . ID=Phyra78696.3;Parent=Phyra78696;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 . CDS 449177 449367 . - 0 ID=Phyra78696;Parent=Phyra78696;rank=2 scaffold_33 . exon 449177 449367 . - . ID=Phyra78696.2;Parent=Phyra78696;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 449427 449773 . - 0 ID=Phyra78696;Parent=Phyra78696;rank=1 scaffold_33 . exon 449427 449773 . - . ID=Phyra78696.1;Parent=Phyra78696;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 ensembl protein_coding_gene 450434 454867 . - . ID=Phyra78697;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000107;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 450434 454867 . - . ID=Phyra78697;Parent=Phyra78697;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 450434 453489 . - 0 ID=Phyra78697;Parent=Phyra78697;rank=4 scaffold_33 . exon 450434 453489 . - . ID=Phyra78697.4;Parent=Phyra78697;constitutive=1;ensembl_phase=1;rank=4 scaffold_33 . CDS 453775 454589 . - 0 ID=Phyra78697;Parent=Phyra78697;rank=3 scaffold_33 . exon 453775 454589 . - . ID=Phyra78697.3;Parent=Phyra78697;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_33 . CDS 454654 454773 . - 0 ID=Phyra78697;Parent=Phyra78697;rank=2 scaffold_33 . exon 454654 454773 . - . ID=Phyra78697.2;Parent=Phyra78697;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_33 . CDS 454797 454867 . - 0 ID=Phyra78697;Parent=Phyra78697;rank=1 scaffold_33 . exon 454797 454867 . - . ID=Phyra78697.1;Parent=Phyra78697;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 ensembl protein_coding_gene 455666 456181 . - . ID=Phyra78698;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000108;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 455666 456181 . - . ID=Phyra78698;Parent=Phyra78698;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 455666 456181 . - 0 ID=Phyra78698;Parent=Phyra78698;rank=1 scaffold_33 . exon 455666 456181 . - . ID=Phyra78698.1;Parent=Phyra78698;constitutive=1;rank=1 scaffold_33 ensembl pseudogene 464175 467506 . - . ID=Phyra47549;biotype=pseudogene;external_name=gwEuk.33.49.1;logic_name=jgi_phyra1 scaffold_33 ensembl pseudogene 464175 467506 . - . ID=Phyra47549;Parent=Phyra47549;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_33 . exon 464175 465400 . - . ID=Phyra47549.5;Parent=Phyra47549;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_33 . exon 465575 465958 . - . ID=Phyra47549.4;Parent=Phyra47549;constitutive=1;rank=4 scaffold_33 . exon 466025 466456 . - . ID=Phyra47549.3;Parent=Phyra47549;constitutive=1;rank=3 scaffold_33 . exon 466559 467229 . - . ID=Phyra47549.2;Parent=Phyra47549;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 ensembl protein_coding_gene 458748 459839 . + . ID=Phyra78699;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_33000109;logic_name=jgi_phyra1 scaffold_33 ensembl transcript 458748 459839 . + . ID=Phyra78699;Parent=Phyra78699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_33 . CDS 458748 459839 . + 0 ID=Phyra78699;Parent=Phyra78699;rank=1 scaffold_33 . exon 458748 459839 . + . ID=Phyra78699.1;Parent=Phyra78699;constitutive=1;rank=1 scaffold_33 . repeat_region 468642 485201 . ? . description=dust scaffold_33 . exon 467281 467506 . - . ID=Phyra47549.1;Parent=Phyra47549;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . repeat_region 486300 487572 . ? . description=dust scaffold_33 . repeat_region 488338 488409 . ? . description=trf scaffold_33 . repeat_region 489148 495422 . ? . description=dust scaffold_33 . repeat_region 495985 496317 . ? . description=trf scaffold_33 . repeat_region 495994 496312 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_32 1 498572 scaffold_32 ensembl tRNA_gene 355 435 . - . ID=EPrPRAG00000000021;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_32 ensembl transcript 355 435 . - . ID=EPrPRAT00000000021;Parent=EPrPRAG00000000021;biotype=tRNA;logic_name=ncrna_eg scaffold_32 . exon 355 435 . - . ID=EPrPRAE00000000021;Parent=EPrPRAT00000000021;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 5730 7214 . - . ID=Phyra71619;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_32000001;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 5730 7214 . - . ID=Phyra71619;Parent=Phyra71619;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 5730 7214 . - 0 ID=Phyra71619;Parent=Phyra71619;rank=1 scaffold_32 . exon 5730 7214 . - . ID=Phyra71619.1;Parent=Phyra71619;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 7419 9644 . - . ID=Phyra78451;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000002;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 7419 9644 . - . ID=Phyra78451;Parent=Phyra78451;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 7419 9644 . - 0 ID=Phyra78451;Parent=Phyra78451;rank=1 scaffold_32 . exon 7419 9644 . - . ID=Phyra78451.1;Parent=Phyra78451;constitutive=1;rank=1 scaffold_32 . repeat_region 14309 14431 . ? . description=dust scaffold_32 . repeat_region 14397 14431 . ? . description=trf scaffold_32 . biological_region 16624 16632 0.999 + . logic_name=eponine scaffold_32 . biological_region 17227 17227 0.999 - . logic_name=eponine scaffold_32 . biological_region 17281 17286 0.999 + . logic_name=eponine scaffold_32 . biological_region 19037 19039 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 11831 12843 . - . ID=Phyra78452;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000003;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 11831 12843 . - . ID=Phyra78452;Parent=Phyra78452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 11831 11948 . - 0 ID=Phyra78452;Parent=Phyra78452;rank=3 scaffold_32 . exon 11831 11948 . - . ID=Phyra78452.3;Parent=Phyra78452;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 12042 12128 . - 0 ID=Phyra78452;Parent=Phyra78452;rank=2 scaffold_32 . exon 12042 12128 . - . ID=Phyra78452.2;Parent=Phyra78452;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_32 . CDS 12548 12843 . - 0 ID=Phyra78452;Parent=Phyra78452;rank=1 scaffold_32 . exon 12548 12843 . - . ID=Phyra78452.1;Parent=Phyra78452;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 ensembl protein_coding_gene 15127 16704 . - . ID=Phyra78453;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000004;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 15127 16704 . - . ID=Phyra78453;Parent=Phyra78453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 15127 16704 . - 0 ID=Phyra78453;Parent=Phyra78453;rank=1 scaffold_32 . exon 15127 16704 . - . ID=Phyra78453.1;Parent=Phyra78453;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 17255 18823 . - . ID=Phyra78454;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000005;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 17255 18823 . - . ID=Phyra78454;Parent=Phyra78454;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 17255 18823 . - 0 ID=Phyra78454;Parent=Phyra78454;rank=1 scaffold_32 . exon 17255 18823 . - . ID=Phyra78454.1;Parent=Phyra78454;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 23567 25088 . - . ID=Phyra71620;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_32000002;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 23567 25088 . - . ID=Phyra71620;Parent=Phyra71620;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 23567 23614 . - 0 ID=Phyra71620;Parent=Phyra71620;rank=3 scaffold_32 . exon 23567 23614 . - . ID=Phyra71620.3;Parent=Phyra71620;constitutive=1;rank=3 scaffold_32 . CDS 23639 24217 . - 0 ID=Phyra71620;Parent=Phyra71620;rank=2 scaffold_32 . exon 23639 24217 . - . ID=Phyra71620.2;Parent=Phyra71620;constitutive=1;rank=2 scaffold_32 . CDS 24297 25088 . - 0 ID=Phyra71620;Parent=Phyra71620;rank=1 scaffold_32 . exon 24297 25088 . - . ID=Phyra71620.1;Parent=Phyra71620;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 20274 21837 . - . ID=Phyra78455;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000006;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 20274 21837 . - . ID=Phyra78455;Parent=Phyra78455;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 20274 20855 . - 0 ID=Phyra78455;Parent=Phyra78455;rank=2 scaffold_32 . exon 20274 20855 . - . ID=Phyra78455.2;Parent=Phyra78455;constitutive=1;rank=2 scaffold_32 . CDS 20875 21837 . - 0 ID=Phyra78455;Parent=Phyra78455;rank=1 scaffold_32 . exon 20875 21837 . - . ID=Phyra78455.1;Parent=Phyra78455;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 27143 34509 . + . ID=Phyra78457;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000008;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 27143 34509 . + . ID=Phyra78457;Parent=Phyra78457;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 27143 27196 . + 0 ID=Phyra78457;Parent=Phyra78457;rank=1 scaffold_32 . exon 27143 27196 . + . ID=Phyra78457.1;Parent=Phyra78457;constitutive=1;rank=1 scaffold_32 . CDS 27271 31512 . + 0 ID=Phyra78457;Parent=Phyra78457;rank=2 scaffold_32 . exon 27271 31512 . + . ID=Phyra78457.2;Parent=Phyra78457;constitutive=1;rank=2 scaffold_32 . CDS 31578 31971 . + 0 ID=Phyra78457;Parent=Phyra78457;rank=3 scaffold_32 . CDS 32119 32976 . + 0 ID=Phyra78457;Parent=Phyra78457;rank=4 scaffold_32 . CDS 33144 33419 . + 0 ID=Phyra78457;Parent=Phyra78457;rank=5 scaffold_32 . CDS 33482 34509 . + 0 ID=Phyra78457;Parent=Phyra78457;rank=6 scaffold_32 . repeat_region 29992 30029 . ? . description=trf scaffold_32 . biological_region 34172 34172 0.999 + . logic_name=eponine scaffold_32 . biological_region 35383 35386 0.999 + . logic_name=eponine scaffold_32 . biological_region 36447 36451 0.999 + . logic_name=eponine scaffold_32 . biological_region 36520 36525 0.999 - . logic_name=eponine scaffold_32 . biological_region 36701 36705 0.999 + . logic_name=eponine scaffold_32 . biological_region 36747 36749 0.999 + . logic_name=eponine scaffold_32 . biological_region 36819 36823 0.999 - . logic_name=eponine scaffold_32 . repeat_region 37201 37208 . ? . description=dust scaffold_32 . biological_region 37903 37908 0.999 - . logic_name=eponine scaffold_32 . biological_region 38294 38296 0.999 + . logic_name=eponine scaffold_32 . biological_region 38367 38368 0.999 - . logic_name=eponine scaffold_32 . repeat_region 39311 39335 . ? . description=trf scaffold_32 . repeat_region 39518 39526 . ? . description=dust scaffold_32 . repeat_region 39573 39587 . ? . description=dust scaffold_32 . exon 31578 31971 . + . ID=Phyra78457.3;Parent=Phyra78457;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_32 . exon 32119 32976 . + . ID=Phyra78457.4;Parent=Phyra78457;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_32 . exon 33144 33419 . + . ID=Phyra78457.5;Parent=Phyra78457;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_32 . exon 33482 34509 . + . ID=Phyra78457.6;Parent=Phyra78457;constitutive=1;ensembl_phase=1;rank=6 scaffold_32 ensembl protein_coding_gene 34646 35534 . - . ID=Phyra95117;biotype=protein_coding;external_name=C_scaffold_32000002;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 34646 35534 . - . ID=Phyra95117;Parent=Phyra95117;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 34646 34848 . - 0 ID=Phyra95117;Parent=Phyra95117;rank=3 scaffold_32 . exon 34646 34848 . - . ID=Phyra95117.3;Parent=Phyra95117;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 34909 35065 . - 0 ID=Phyra95117;Parent=Phyra95117;rank=2 scaffold_32 . exon 34909 35065 . - . ID=Phyra95117.2;Parent=Phyra95117;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_32 . CDS 35124 35534 . - 0 ID=Phyra95117;Parent=Phyra95117;rank=1 scaffold_32 . exon 35124 35534 . - . ID=Phyra95117.1;Parent=Phyra95117;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 35738 38521 . - . ID=Phyra95118;biotype=protein_coding;external_name=C_scaffold_32000003;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 35738 38521 . - . ID=Phyra95118;Parent=Phyra95118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 35738 36076 . - 0 ID=Phyra95118;Parent=Phyra95118;rank=7 scaffold_32 . exon 35738 36076 . - . ID=Phyra95118.7;Parent=Phyra95118;constitutive=1;rank=7 scaffold_32 . CDS 36182 36625 . - 0 ID=Phyra95118;Parent=Phyra95118;rank=6 scaffold_32 . exon 36182 36625 . - . ID=Phyra95118.6;Parent=Phyra95118;constitutive=1;rank=6 scaffold_32 . CDS 36692 36972 . - 0 ID=Phyra95118;Parent=Phyra95118;rank=5 scaffold_32 . exon 36692 36972 . - . ID=Phyra95118.5;Parent=Phyra95118;constitutive=1;ensembl_phase=1;rank=5 scaffold_32 . CDS 37308 37470 . - 0 ID=Phyra95118;Parent=Phyra95118;rank=4 scaffold_32 . exon 37308 37470 . - . ID=Phyra95118.4;Parent=Phyra95118;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_32 . CDS 37633 37742 . - 0 ID=Phyra95118;Parent=Phyra95118;rank=3 scaffold_32 . exon 37633 37742 . - . ID=Phyra95118.3;Parent=Phyra95118;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 37827 38184 . - 0 ID=Phyra95118;Parent=Phyra95118;rank=2 scaffold_32 . exon 37827 38184 . - . ID=Phyra95118.2;Parent=Phyra95118;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_32 . CDS 38246 38521 . - 0 ID=Phyra95118;Parent=Phyra95118;rank=1 scaffold_32 . exon 38246 38521 . - . ID=Phyra95118.1;Parent=Phyra95118;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 41179 42459 . + . ID=Phyra78460;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000011;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 41179 42459 . + . ID=Phyra78460;Parent=Phyra78460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 41179 42459 . + 0 ID=Phyra78460;Parent=Phyra78460;rank=1 scaffold_32 . exon 41179 42459 . + . ID=Phyra78460.1;Parent=Phyra78460;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 44304 44714 . + . ID=Phyra78461;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000012;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 44304 44714 . + . ID=Phyra78461;Parent=Phyra78461;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 44304 44714 . + 0 ID=Phyra78461;Parent=Phyra78461;rank=1 scaffold_32 . exon 44304 44714 . + . ID=Phyra78461.1;Parent=Phyra78461;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 47533 48606 . + . ID=Phyra78462;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000013;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 47533 48606 . + . ID=Phyra78462;Parent=Phyra78462;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 47533 48606 . + 0 ID=Phyra78462;Parent=Phyra78462;rank=1 scaffold_32 . exon 47533 48606 . + . ID=Phyra78462.1;Parent=Phyra78462;constitutive=1;rank=1 scaffold_32 . biological_region 50847 50848 0.999 - . logic_name=eponine scaffold_32 . biological_region 51709 51714 0.999 - . logic_name=eponine scaffold_32 . biological_region 51977 51980 0.999 + . logic_name=eponine scaffold_32 . biological_region 53686 53688 0.999 - . logic_name=eponine scaffold_32 . biological_region 54262 54264 0.999 - . logic_name=eponine scaffold_32 . biological_region 54315 54320 0.999 + . logic_name=eponine scaffold_32 . biological_region 54398 54406 0.999 - . logic_name=eponine scaffold_32 . biological_region 54408 54412 0.999 + . logic_name=eponine scaffold_32 . biological_region 54427 54428 0.999 - . logic_name=eponine scaffold_32 . biological_region 54478 54482 0.999 + . logic_name=eponine scaffold_32 . biological_region 54508 54512 0.999 + . logic_name=eponine scaffold_32 . biological_region 58157 58160 0.999 - . logic_name=eponine scaffold_32 . biological_region 58167 58172 0.999 - . logic_name=eponine scaffold_32 . biological_region 58209 58213 0.999 + . logic_name=eponine scaffold_32 . biological_region 58251 58255 0.999 + . logic_name=eponine scaffold_32 . repeat_region 58712 58765 . ? . description=dust scaffold_32 ensembl protein_coding_gene 50104 51198 . + . ID=Phyra78463;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000014;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 50104 51198 . + . ID=Phyra78463;Parent=Phyra78463;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 50104 50361 . + 0 ID=Phyra78463;Parent=Phyra78463;rank=1 scaffold_32 . exon 50104 50361 . + . ID=Phyra78463.1;Parent=Phyra78463;constitutive=1;rank=1 scaffold_32 . CDS 50389 51198 . + 0 ID=Phyra78463;Parent=Phyra78463;rank=2 scaffold_32 . exon 50389 51198 . + . ID=Phyra78463.2;Parent=Phyra78463;constitutive=1;rank=2 scaffold_32 ensembl protein_coding_gene 51262 52545 . - . ID=Phyra78464;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000015;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 51262 52545 . - . ID=Phyra78464;Parent=Phyra78464;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 51262 51463 . - 0 ID=Phyra78464;Parent=Phyra78464;rank=4 scaffold_32 . exon 51262 51463 . - . ID=Phyra78464.4;Parent=Phyra78464;constitutive=1;ensembl_phase=2;rank=4 scaffold_32 . CDS 51532 52249 . - 0 ID=Phyra78464;Parent=Phyra78464;rank=3 scaffold_32 . exon 51532 52249 . - . ID=Phyra78464.3;Parent=Phyra78464;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_32 . CDS 52312 52414 . - 0 ID=Phyra78464;Parent=Phyra78464;rank=2 scaffold_32 . exon 52312 52414 . - . ID=Phyra78464.2;Parent=Phyra78464;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_32 . CDS 52495 52545 . - 0 ID=Phyra78464;Parent=Phyra78464;rank=1 scaffold_32 . exon 52495 52545 . - . ID=Phyra78464.1;Parent=Phyra78464;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 54004 55083 . + . ID=Phyra78465;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000016;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 54004 55083 . + . ID=Phyra78465;Parent=Phyra78465;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 54004 55083 . + 0 ID=Phyra78465;Parent=Phyra78465;rank=1 scaffold_32 . exon 54004 55083 . + . ID=Phyra78465.1;Parent=Phyra78465;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 55581 57455 . - . ID=Phyra78466;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000017;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 55581 57455 . - . ID=Phyra78466;Parent=Phyra78466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 55581 56064 . - 0 ID=Phyra78466;Parent=Phyra78466;rank=3 scaffold_32 . exon 55581 56064 . - . ID=Phyra78466.3;Parent=Phyra78466;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 56148 56224 . - 0 ID=Phyra78466;Parent=Phyra78466;rank=2 scaffold_32 . exon 56148 56224 . - . ID=Phyra78466.2;Parent=Phyra78466;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_32 . CDS 56289 57455 . - 0 ID=Phyra78466;Parent=Phyra78466;rank=1 scaffold_32 . exon 56289 57455 . - . ID=Phyra78466.1;Parent=Phyra78466;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 58134 61595 . + . ID=Phyra78467;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000018;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 58134 61595 . + . ID=Phyra78467;Parent=Phyra78467;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 58134 58636 . + 0 ID=Phyra78467;Parent=Phyra78467;rank=1 scaffold_32 . exon 58134 58636 . + . ID=Phyra78467.1;Parent=Phyra78467;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 58772 61595 . + 0 ID=Phyra78467;Parent=Phyra78467;rank=2 scaffold_32 . exon 58772 61595 . + . ID=Phyra78467.2;Parent=Phyra78467;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 ensembl protein_coding_gene 61715 64637 . - . ID=Phyra78468;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000019;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 61715 64637 . - . ID=Phyra78468;Parent=Phyra78468;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 61715 62824 . - 0 ID=Phyra78468;Parent=Phyra78468;rank=2 scaffold_32 . exon 61715 62824 . - . ID=Phyra78468.2;Parent=Phyra78468;constitutive=1;rank=2 scaffold_32 . CDS 62889 64637 . - 0 ID=Phyra78468;Parent=Phyra78468;rank=1 scaffold_32 . exon 62889 64637 . - . ID=Phyra78468.1;Parent=Phyra78468;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 65354 67973 . + . ID=Phyra78469;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000020;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 65354 67973 . + . ID=Phyra78469;Parent=Phyra78469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 65354 67639 . + 0 ID=Phyra78469;Parent=Phyra78469;rank=1 scaffold_32 . exon 65354 67639 . + . ID=Phyra78469.1;Parent=Phyra78469;constitutive=1;rank=1 scaffold_32 . CDS 67704 67973 . + 0 ID=Phyra78469;Parent=Phyra78469;rank=2 scaffold_32 . exon 67704 67973 . + . ID=Phyra78469.2;Parent=Phyra78469;constitutive=1;rank=2 scaffold_32 ensembl protein_coding_gene 68107 69532 . + . ID=Phyra78470;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000021;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 68107 69532 . + . ID=Phyra78470;Parent=Phyra78470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 68107 69175 . + 0 ID=Phyra78470;Parent=Phyra78470;rank=1 scaffold_32 . exon 68107 69175 . + . ID=Phyra78470.1;Parent=Phyra78470;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 69246 69532 . + 0 ID=Phyra78470;Parent=Phyra78470;rank=2 scaffold_32 . exon 69246 69532 . + . ID=Phyra78470.2;Parent=Phyra78470;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . repeat_region 70275 70301 . ? . description=trf scaffold_32 . biological_region 70721 70724 0.999 + . logic_name=eponine scaffold_32 . biological_region 70778 70782 0.999 - . logic_name=eponine scaffold_32 . biological_region 70820 70822 0.999 - . logic_name=eponine scaffold_32 . biological_region 70840 70842 0.999 + . logic_name=eponine scaffold_32 . repeat_region 72064 72083 . ? . description=dust scaffold_32 . repeat_region 77016 77046 . ? . description=trf scaffold_32 . repeat_region 77495 77517 . ? . description=trf scaffold_32 ensembl protein_coding_gene 69865 71031 . - . ID=Phyra78471;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000022;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 69865 71031 . - . ID=Phyra78471;Parent=Phyra78471;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 69865 71031 . - 0 ID=Phyra78471;Parent=Phyra78471;rank=1 scaffold_32 . exon 69865 71031 . - . ID=Phyra78471.1;Parent=Phyra78471;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 71348 75753 . + . ID=Phyra78472;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000023;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 71348 75753 . + . ID=Phyra78472;Parent=Phyra78472;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 71348 71443 . + 0 ID=Phyra78472;Parent=Phyra78472;rank=1 scaffold_32 . exon 71348 71443 . + . ID=Phyra78472.1;Parent=Phyra78472;constitutive=1;rank=1 scaffold_32 . CDS 71503 75753 . + 0 ID=Phyra78472;Parent=Phyra78472;rank=2 scaffold_32 . exon 71503 75753 . + . ID=Phyra78472.2;Parent=Phyra78472;constitutive=1;rank=2 scaffold_32 ensembl protein_coding_gene 75782 76859 . - . ID=Phyra78473;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000024;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 75782 76859 . - . ID=Phyra78473;Parent=Phyra78473;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 75782 76574 . - 0 ID=Phyra78473;Parent=Phyra78473;rank=2 scaffold_32 . exon 75782 76574 . - . ID=Phyra78473.2;Parent=Phyra78473;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 76663 76859 . - 0 ID=Phyra78473;Parent=Phyra78473;rank=1 scaffold_32 . exon 76663 76859 . - . ID=Phyra78473.1;Parent=Phyra78473;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 ensembl protein_coding_gene 77600 78865 . + . ID=Phyra78474;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000025;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 77600 78865 . + . ID=Phyra78474;Parent=Phyra78474;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 77600 78865 . + 0 ID=Phyra78474;Parent=Phyra78474;rank=1 scaffold_32 . exon 77600 78865 . + . ID=Phyra78474.1;Parent=Phyra78474;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 79172 79852 . - . ID=Phyra78475;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000026;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 79172 79852 . - . ID=Phyra78475;Parent=Phyra78475;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 79172 79852 . - 0 ID=Phyra78475;Parent=Phyra78475;rank=1 scaffold_32 . exon 79172 79852 . - . ID=Phyra78475.1;Parent=Phyra78475;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 82225 83096 . - . ID=Phyra78476;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000027;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 82225 83096 . - . ID=Phyra78476;Parent=Phyra78476;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 82225 82564 . - 0 ID=Phyra78476;Parent=Phyra78476;rank=3 scaffold_32 . exon 82225 82564 . - . ID=Phyra78476.3;Parent=Phyra78476;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 82856 82930 . - 0 ID=Phyra78476;Parent=Phyra78476;rank=2 scaffold_32 . exon 82856 82930 . - . ID=Phyra78476.2;Parent=Phyra78476;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_32 . CDS 83014 83096 . - 0 ID=Phyra78476;Parent=Phyra78476;rank=1 scaffold_32 . exon 83014 83096 . - . ID=Phyra78476.1;Parent=Phyra78476;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 ensembl protein_coding_gene 87537 89771 . - . ID=Phyra78478;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000029;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 87537 89771 . - . ID=Phyra78478;Parent=Phyra78478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 87537 89771 . - 0 ID=Phyra78478;Parent=Phyra78478;rank=1 scaffold_32 . exon 87537 89771 . - . ID=Phyra78478.1;Parent=Phyra78478;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 83423 87454 . + . ID=Phyra95122;biotype=protein_coding;external_name=C_scaffold_32000007;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 83423 87454 . + . ID=Phyra95122;Parent=Phyra95122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 83423 84713 . + 0 ID=Phyra95122;Parent=Phyra95122;rank=1 scaffold_32 . exon 83423 84713 . + . ID=Phyra95122.1;Parent=Phyra95122;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 84837 85380 . + 0 ID=Phyra95122;Parent=Phyra95122;rank=2 scaffold_32 . exon 84837 85380 . + . ID=Phyra95122.2;Parent=Phyra95122;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_32 . CDS 85504 85564 . + 0 ID=Phyra95122;Parent=Phyra95122;rank=3 scaffold_32 . exon 85504 85564 . + . ID=Phyra95122.3;Parent=Phyra95122;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 85771 85820 . + 0 ID=Phyra95122;Parent=Phyra95122;rank=4 scaffold_32 . exon 85771 85820 . + . ID=Phyra95122.4;Parent=Phyra95122;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_32 . CDS 85891 86015 . + 0 ID=Phyra95122;Parent=Phyra95122;rank=5 scaffold_32 . exon 85891 86015 . + . ID=Phyra95122.5;Parent=Phyra95122;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_32 . CDS 86115 86284 . + 0 ID=Phyra95122;Parent=Phyra95122;rank=6 scaffold_32 . exon 86115 86284 . + . ID=Phyra95122.6;Parent=Phyra95122;constitutive=1;ensembl_phase=1;rank=6 scaffold_32 . CDS 86320 86344 . + 0 ID=Phyra95122;Parent=Phyra95122;rank=7 scaffold_32 . exon 86320 86344 . + . ID=Phyra95122.7;Parent=Phyra95122;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_32 . CDS 86649 87014 . + 0 ID=Phyra95122;Parent=Phyra95122;rank=8 scaffold_32 . exon 86649 87014 . + . ID=Phyra95122.8;Parent=Phyra95122;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_32 . CDS 87078 87454 . + 0 ID=Phyra95122;Parent=Phyra95122;rank=9 scaffold_32 . exon 87078 87454 . + . ID=Phyra95122.9;Parent=Phyra95122;constitutive=1;ensembl_phase=1;rank=9 scaffold_32 . biological_region 91444 91447 0.999 + . logic_name=eponine scaffold_32 . biological_region 91803 91803 0.999 - . logic_name=eponine scaffold_32 . biological_region 91855 91861 0.999 + . logic_name=eponine scaffold_32 . repeat_region 93469 93482 . ? . description=dust scaffold_32 . biological_region 96825 96830 0.999 - . logic_name=eponine scaffold_32 . biological_region 96879 96890 0.999 + . logic_name=eponine scaffold_32 . biological_region 96909 96911 0.999 + . logic_name=eponine scaffold_32 . biological_region 97066 97066 0.999 + . logic_name=eponine scaffold_32 . biological_region 97806 97812 0.999 - . logic_name=eponine scaffold_32 . biological_region 97824 97826 0.999 + . logic_name=eponine scaffold_32 . biological_region 97862 97865 0.999 + . logic_name=eponine scaffold_32 . biological_region 97914 97920 0.999 + . logic_name=eponine scaffold_32 . biological_region 99155 99159 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 90485 93055 . - . ID=Phyra78479;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000030;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 90485 93055 . - . ID=Phyra78479;Parent=Phyra78479;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 90485 93055 . - 0 ID=Phyra78479;Parent=Phyra78479;rank=1 scaffold_32 . exon 90485 93055 . - . ID=Phyra78479.1;Parent=Phyra78479;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 93992 95071 . - . ID=Phyra78480;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000031;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 93992 95071 . - . ID=Phyra78480;Parent=Phyra78480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 93992 95071 . - 0 ID=Phyra78480;Parent=Phyra78480;rank=1 scaffold_32 . exon 93992 95071 . - . ID=Phyra78480.1;Parent=Phyra78480;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 95995 97029 . - . ID=Phyra78481;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000032;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 95995 97029 . - . ID=Phyra78481;Parent=Phyra78481;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 95995 97029 . - 0 ID=Phyra78481;Parent=Phyra78481;rank=1 scaffold_32 . exon 95995 97029 . - . ID=Phyra78481.1;Parent=Phyra78481;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 97702 98706 . + . ID=Phyra78482;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000033;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 97702 98706 . + . ID=Phyra78482;Parent=Phyra78482;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 97702 98706 . + 0 ID=Phyra78482;Parent=Phyra78482;rank=1 scaffold_32 . exon 97702 98706 . + . ID=Phyra78482.1;Parent=Phyra78482;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 98862 100395 . - . ID=Phyra78483;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000034;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 98862 100395 . - . ID=Phyra78483;Parent=Phyra78483;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 98862 100045 . - 0 ID=Phyra78483;Parent=Phyra78483;rank=2 scaffold_32 . exon 98862 100045 . - . ID=Phyra78483.2;Parent=Phyra78483;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 100233 100395 . - 0 ID=Phyra78483;Parent=Phyra78483;rank=1 scaffold_32 . exon 100233 100395 . - . ID=Phyra78483.1;Parent=Phyra78483;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . biological_region 120830 120840 0.999 + . logic_name=eponine scaffold_32 . biological_region 120860 120863 0.999 + . logic_name=eponine scaffold_32 . biological_region 120893 120897 0.999 + . logic_name=eponine scaffold_32 . biological_region 120912 120918 0.999 + . logic_name=eponine scaffold_32 . biological_region 120937 120939 0.999 + . logic_name=eponine scaffold_32 . biological_region 120955 120964 0.999 - . logic_name=eponine scaffold_32 . biological_region 120997 121003 0.999 - . logic_name=eponine scaffold_32 . biological_region 121054 121060 0.999 + . logic_name=eponine scaffold_32 . biological_region 121436 121441 0.999 - . logic_name=eponine scaffold_32 . biological_region 122069 122072 0.999 + . logic_name=eponine scaffold_32 . biological_region 122106 122108 0.999 - . logic_name=eponine scaffold_32 . biological_region 122128 122133 0.999 + . logic_name=eponine scaffold_32 . repeat_region 122263 122282 . ? . description=trf scaffold_32 . biological_region 122487 122492 0.999 - . logic_name=eponine scaffold_32 . biological_region 122938 122939 0.999 + . logic_name=eponine scaffold_32 . biological_region 123059 123063 0.999 - . logic_name=eponine scaffold_32 . biological_region 123079 123084 0.999 - . logic_name=eponine scaffold_32 . biological_region 123792 123797 0.999 + . logic_name=eponine scaffold_32 . biological_region 123838 123844 0.999 - . logic_name=eponine scaffold_32 . repeat_region 125328 125366 . ? . description=trf scaffold_32 . repeat_region 126714 126737 . ? . description=trf scaffold_32 . biological_region 127383 127387 0.999 - . logic_name=eponine scaffold_32 . biological_region 129588 129593 0.999 + . logic_name=eponine scaffold_32 ensembl protein_coding_gene 126854 128131 . + . ID=Phyra71621;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_32000003;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 126854 128131 . + . ID=Phyra71621;Parent=Phyra71621;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 126854 128131 . + 0 ID=Phyra71621;Parent=Phyra71621;rank=1 scaffold_32 . exon 126854 128131 . + . ID=Phyra71621.1;Parent=Phyra71621;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 128195 128695 . - . ID=Phyra71622;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_32000004;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 128195 128695 . - . ID=Phyra71622;Parent=Phyra71622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 128195 128695 . - 0 ID=Phyra71622;Parent=Phyra71622;rank=1 scaffold_32 . exon 128195 128695 . - . ID=Phyra71622.1;Parent=Phyra71622;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 120451 121210 . - . ID=Phyra78484;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000035;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 120451 121210 . - . ID=Phyra78484;Parent=Phyra78484;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 120451 120485 . - 0 ID=Phyra78484;Parent=Phyra78484;rank=2 scaffold_32 . exon 120451 120485 . - . ID=Phyra78484.2;Parent=Phyra78484;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 120580 121210 . - 0 ID=Phyra78484;Parent=Phyra78484;rank=1 scaffold_32 . exon 120580 121210 . - . ID=Phyra78484.1;Parent=Phyra78484;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 ensembl protein_coding_gene 122008 122514 . - . ID=Phyra78485;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000036;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 122008 122514 . - . ID=Phyra78485;Parent=Phyra78485;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 122008 122514 . - 0 ID=Phyra78485;Parent=Phyra78485;rank=1 scaffold_32 . exon 122008 122514 . - . ID=Phyra78485.1;Parent=Phyra78485;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 124521 126101 . + . ID=Phyra78486;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000037;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 124521 126101 . + . ID=Phyra78486;Parent=Phyra78486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 124521 126101 . + 0 ID=Phyra78486;Parent=Phyra78486;rank=1 scaffold_32 . exon 124521 126101 . + . ID=Phyra78486.1;Parent=Phyra78486;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 129619 134179 . + . ID=Phyra78489;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000040;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 129619 134179 . + . ID=Phyra78489;Parent=Phyra78489;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 129619 129621 . + 0 ID=Phyra78489;Parent=Phyra78489;rank=1 scaffold_32 . exon 129619 129621 . + . ID=Phyra78489.1;Parent=Phyra78489;constitutive=1;rank=1 scaffold_32 . CDS 129719 129773 . + 0 ID=Phyra78489;Parent=Phyra78489;rank=2 scaffold_32 . CDS 129833 129973 . + 0 ID=Phyra78489;Parent=Phyra78489;rank=3 scaffold_32 . CDS 130053 130252 . + 0 ID=Phyra78489;Parent=Phyra78489;rank=4 scaffold_32 . CDS 130322 131161 . + 0 ID=Phyra78489;Parent=Phyra78489;rank=5 scaffold_32 . CDS 131240 132046 . + 0 ID=Phyra78489;Parent=Phyra78489;rank=6 scaffold_32 . CDS 132166 133392 . + 0 ID=Phyra78489;Parent=Phyra78489;rank=7 scaffold_32 . CDS 133469 134179 . + 0 ID=Phyra78489;Parent=Phyra78489;rank=8 scaffold_32 . repeat_region 131004 131012 . ? . description=dust scaffold_32 . repeat_region 132917 133063 . + . description=(CAG)n scaffold_32 . repeat_region 133304 133489 . + . description=(CAG)n scaffold_32 . exon 129719 129773 . + . ID=Phyra78489.2;Parent=Phyra78489;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_32 . exon 129833 129973 . + . ID=Phyra78489.3;Parent=Phyra78489;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_32 . exon 130053 130252 . + . ID=Phyra78489.4;Parent=Phyra78489;constitutive=1;ensembl_phase=1;rank=4 scaffold_32 . exon 130322 131161 . + . ID=Phyra78489.5;Parent=Phyra78489;constitutive=1;rank=5 scaffold_32 . exon 131240 132046 . + . ID=Phyra78489.6;Parent=Phyra78489;constitutive=1;rank=6 scaffold_32 . exon 132166 133392 . + . ID=Phyra78489.7;Parent=Phyra78489;constitutive=1;rank=7 scaffold_32 . exon 133469 134179 . + . ID=Phyra78489.8;Parent=Phyra78489;constitutive=1;rank=8 scaffold_32 ensembl protein_coding_gene 134517 135899 . - . ID=Phyra78490;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000041;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 134517 135899 . - . ID=Phyra78490;Parent=Phyra78490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 134517 135899 . - 0 ID=Phyra78490;Parent=Phyra78490;rank=1 scaffold_32 . exon 134517 135899 . - . ID=Phyra78490.1;Parent=Phyra78490;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 138212 139120 . + . ID=Phyra78491;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000042;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 138212 139120 . + . ID=Phyra78491;Parent=Phyra78491;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 138212 139120 . + 0 ID=Phyra78491;Parent=Phyra78491;rank=1 scaffold_32 . exon 138212 139120 . + . ID=Phyra78491.1;Parent=Phyra78491;constitutive=1;rank=1 scaffold_32 . repeat_region 140044 140069 . ? . description=trf scaffold_32 . biological_region 140123 140130 0.999 - . logic_name=eponine scaffold_32 . repeat_region 140217 140255 . ? . description=trf scaffold_32 . repeat_region 140228 140406 . + . description=(CGA)n scaffold_32 . biological_region 140389 140393 0.999 - . logic_name=eponine scaffold_32 . biological_region 148615 148621 0.999 - . logic_name=eponine scaffold_32 . biological_region 148751 148755 0.999 + . logic_name=eponine scaffold_32 . biological_region 148806 148809 0.999 - . logic_name=eponine scaffold_32 . biological_region 148839 148840 0.999 - . logic_name=eponine scaffold_32 . biological_region 148862 148864 0.999 + . logic_name=eponine scaffold_32 . biological_region 149249 149252 0.999 - . logic_name=eponine scaffold_32 . biological_region 149304 149307 0.999 + . logic_name=eponine scaffold_32 . biological_region 149521 149527 0.999 + . logic_name=eponine scaffold_32 . biological_region 149550 149553 0.999 + . logic_name=eponine scaffold_32 . biological_region 149570 149570 0.999 + . logic_name=eponine scaffold_32 ensembl protein_coding_gene 140718 141728 . - . ID=Phyra78493;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000044;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 140718 141728 . - . ID=Phyra78493;Parent=Phyra78493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 140718 141728 . - 0 ID=Phyra78493;Parent=Phyra78493;rank=1 scaffold_32 . exon 140718 141728 . - . ID=Phyra78493.1;Parent=Phyra78493;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 142624 143649 . + . ID=Phyra78494;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000045;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 142624 143649 . + . ID=Phyra78494;Parent=Phyra78494;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 142624 143649 . + 0 ID=Phyra78494;Parent=Phyra78494;rank=1 scaffold_32 . exon 142624 143649 . + . ID=Phyra78494.1;Parent=Phyra78494;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 144022 149730 . - . ID=Phyra78495;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000046;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 144022 149730 . - . ID=Phyra78495;Parent=Phyra78495;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 144022 149730 . - 0 ID=Phyra78495;Parent=Phyra78495;rank=1 scaffold_32 . exon 144022 149730 . - . ID=Phyra78495.1;Parent=Phyra78495;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 139617 140537 . + . ID=Phyra95126;biotype=protein_coding;external_name=C_scaffold_32000011;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 139617 140537 . + . ID=Phyra95126;Parent=Phyra95126;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 139617 140302 . + 0 ID=Phyra95126;Parent=Phyra95126;rank=1 scaffold_32 . exon 139617 140302 . + . ID=Phyra95126.1;Parent=Phyra95126;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 140336 140537 . + 0 ID=Phyra95126;Parent=Phyra95126;rank=2 scaffold_32 . exon 140336 140537 . + . ID=Phyra95126.2;Parent=Phyra95126;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 ensembl protein_coding_gene 152151 152798 . - . ID=Phyra47458;biotype=protein_coding;external_name=gwEuk.32.217.1;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 152151 152798 . - . ID=Phyra47458;Parent=Phyra47458;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 152151 152798 . - 0 ID=Phyra47458;Parent=Phyra47458;rank=1 scaffold_32 . exon 152151 152798 . - . ID=Phyra47458.1;Parent=Phyra47458;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 153998 154706 . + . ID=Phyra71624;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_32000006;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 153998 154706 . + . ID=Phyra71624;Parent=Phyra71624;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 153998 154634 . + 0 ID=Phyra71624;Parent=Phyra71624;rank=1 scaffold_32 . exon 153998 154634 . + . ID=Phyra71624.1;Parent=Phyra71624;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 154669 154706 . + 0 ID=Phyra71624;Parent=Phyra71624;rank=2 scaffold_32 . exon 154669 154706 . + . ID=Phyra71624.2;Parent=Phyra71624;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 ensembl protein_coding_gene 150162 150806 . - . ID=Phyra78496;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000047;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 150162 150806 . - . ID=Phyra78496;Parent=Phyra78496;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 150162 150806 . - 0 ID=Phyra78496;Parent=Phyra78496;rank=1 scaffold_32 . exon 150162 150806 . - . ID=Phyra78496.1;Parent=Phyra78496;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 155049 156686 . - . ID=Phyra78499;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000050;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 155049 156686 . - . ID=Phyra78499;Parent=Phyra78499;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 155049 155057 . - 0 ID=Phyra78499;Parent=Phyra78499;rank=4 scaffold_32 . exon 155049 155057 . - . ID=Phyra78499.4;Parent=Phyra78499;constitutive=1;rank=4 scaffold_32 . CDS 155101 155468 . - 0 ID=Phyra78499;Parent=Phyra78499;rank=3 scaffold_32 . exon 155101 155468 . - . ID=Phyra78499.3;Parent=Phyra78499;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 155607 156546 . - 0 ID=Phyra78499;Parent=Phyra78499;rank=2 scaffold_32 . exon 155607 156546 . - . ID=Phyra78499.2;Parent=Phyra78499;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_32 . CDS 156618 156686 . - 0 ID=Phyra78499;Parent=Phyra78499;rank=1 scaffold_32 . exon 156618 156686 . - . ID=Phyra78499.1;Parent=Phyra78499;constitutive=1;rank=1 scaffold_32 . biological_region 159566 159568 0.999 - . logic_name=eponine scaffold_32 . biological_region 159620 159624 0.999 + . logic_name=eponine scaffold_32 . biological_region 159645 159648 0.999 + . logic_name=eponine scaffold_32 . biological_region 160451 160453 0.999 - . logic_name=eponine scaffold_32 . biological_region 160583 160586 0.999 - . logic_name=eponine scaffold_32 . biological_region 160617 160620 0.999 - . logic_name=eponine scaffold_32 . biological_region 160695 160700 0.999 - . logic_name=eponine scaffold_32 . biological_region 160725 160729 0.999 - . logic_name=eponine scaffold_32 . repeat_region 161692 161777 . + . description=(CAG)n scaffold_32 . repeat_region 161731 161777 . ? . description=trf scaffold_32 . repeat_region 161735 161777 . ? . description=dust scaffold_32 . repeat_region 161736 161776 . ? . description=trf scaffold_32 . biological_region 162434 162436 0.999 + . logic_name=eponine scaffold_32 . biological_region 162436 162438 0.999 - . logic_name=eponine scaffold_32 . biological_region 162724 162728 0.999 + . logic_name=eponine scaffold_32 . biological_region 166778 166784 0.999 - . logic_name=eponine scaffold_32 . biological_region 167283 167284 0.999 - . logic_name=eponine scaffold_32 . biological_region 167369 167375 0.999 - . logic_name=eponine scaffold_32 . biological_region 168963 168964 0.999 - . logic_name=eponine scaffold_32 . repeat_region 169013 169063 . ? . description=trf scaffold_32 ensembl protein_coding_gene 160074 161816 . + . ID=Phyra78500;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000051;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 160074 161816 . + . ID=Phyra78500;Parent=Phyra78500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 160074 161816 . + 0 ID=Phyra78500;Parent=Phyra78500;rank=1 scaffold_32 . exon 160074 161816 . + . ID=Phyra78500.1;Parent=Phyra78500;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 162176 162892 . - . ID=Phyra78501;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000052;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 162176 162892 . - . ID=Phyra78501;Parent=Phyra78501;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 162176 162892 . - 0 ID=Phyra78501;Parent=Phyra78501;rank=1 scaffold_32 . exon 162176 162892 . - . ID=Phyra78501.1;Parent=Phyra78501;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 165118 166488 . + . ID=Phyra78502;biotype=protein_coding;description=CFZ1-like protein [Source:UniProtKB/TrEMBL%3BAcc:B6V6G8];external_name=CZF1;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 165118 166488 . + . ID=Phyra78502;Parent=Phyra78502;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 165118 166488 . + 0 ID=Phyra78502;Parent=Phyra78502;rank=1 scaffold_32 . exon 165118 166488 . + . ID=Phyra78502.1;Parent=Phyra78502;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 166578 166901 . - . ID=Phyra78503;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000054;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 166578 166901 . - . ID=Phyra78503;Parent=Phyra78503;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 166578 166901 . - 0 ID=Phyra78503;Parent=Phyra78503;rank=1 scaffold_32 . exon 166578 166901 . - . ID=Phyra78503.1;Parent=Phyra78503;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 167211 170195 . + . ID=Phyra78504;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000055;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 167211 170195 . + . ID=Phyra78504;Parent=Phyra78504;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 167211 167483 . + 0 ID=Phyra78504;Parent=Phyra78504;rank=1 scaffold_32 . exon 167211 167483 . + . ID=Phyra78504.1;Parent=Phyra78504;constitutive=1;rank=1 scaffold_32 . CDS 167577 170195 . + 0 ID=Phyra78504;Parent=Phyra78504;rank=2 scaffold_32 . exon 167577 170195 . + . ID=Phyra78504.2;Parent=Phyra78504;constitutive=1;rank=2 scaffold_32 ensembl protein_coding_gene 170376 172282 . - . ID=Phyra71625;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_32000007;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 170376 172282 . - . ID=Phyra71625;Parent=Phyra71625;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 170376 171785 . - 0 ID=Phyra71625;Parent=Phyra71625;rank=2 scaffold_32 . exon 170376 171785 . - . ID=Phyra71625.2;Parent=Phyra71625;constitutive=1;rank=2 scaffold_32 . CDS 171863 172282 . - 0 ID=Phyra71625;Parent=Phyra71625;rank=1 scaffold_32 . exon 171863 172282 . - . ID=Phyra71625.1;Parent=Phyra71625;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 172623 173195 . - . ID=Phyra71626;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_32000008;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 172623 173195 . - . ID=Phyra71626;Parent=Phyra71626;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 172623 173195 . - 0 ID=Phyra71626;Parent=Phyra71626;rank=1 scaffold_32 . exon 172623 173195 . - . ID=Phyra71626.1;Parent=Phyra71626;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 174568 175241 . + . ID=Phyra71627;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_32000009;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 174568 175241 . + . ID=Phyra71627;Parent=Phyra71627;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 174568 174802 . + 0 ID=Phyra71627;Parent=Phyra71627;rank=1 scaffold_32 . exon 174568 174802 . + . ID=Phyra71627.1;Parent=Phyra71627;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 175021 175241 . + 0 ID=Phyra71627;Parent=Phyra71627;rank=2 scaffold_32 . exon 175021 175241 . + . ID=Phyra71627.2;Parent=Phyra71627;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 ensembl protein_coding_gene 173836 174372 . - . ID=Phyra78507;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000058;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 173836 174372 . - . ID=Phyra78507;Parent=Phyra78507;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 173836 174372 . - 0 ID=Phyra78507;Parent=Phyra78507;rank=1 scaffold_32 . exon 173836 174372 . - . ID=Phyra78507.1;Parent=Phyra78507;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 175359 177725 . - . ID=Phyra78509;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000060;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 175359 177725 . - . ID=Phyra78509;Parent=Phyra78509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 175359 177725 . - 0 ID=Phyra78509;Parent=Phyra78509;rank=1 scaffold_32 . exon 175359 177725 . - . ID=Phyra78509.1;Parent=Phyra78509;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 178700 179981 . - . ID=Phyra78510;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000061;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 178700 179981 . - . ID=Phyra78510;Parent=Phyra78510;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 178700 179117 . - 0 ID=Phyra78510;Parent=Phyra78510;rank=6 scaffold_32 . exon 178700 179117 . - . ID=Phyra78510.6;Parent=Phyra78510;constitutive=1;ensembl_phase=2;rank=6 scaffold_32 . CDS 179159 179304 . - 0 ID=Phyra78510;Parent=Phyra78510;rank=5 scaffold_32 . exon 179159 179304 . - . ID=Phyra78510.5;Parent=Phyra78510;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_32 . CDS 179379 179437 . - 0 ID=Phyra78510;Parent=Phyra78510;rank=4 scaffold_32 . exon 179379 179437 . - . ID=Phyra78510.4;Parent=Phyra78510;constitutive=1;ensembl_phase=1;rank=4 scaffold_32 . CDS 179500 179611 . - 0 ID=Phyra78510;Parent=Phyra78510;rank=3 scaffold_32 . CDS 179699 179779 . - 0 ID=Phyra78510;Parent=Phyra78510;rank=2 scaffold_32 . CDS 179898 179981 . - 0 ID=Phyra78510;Parent=Phyra78510;rank=1 scaffold_32 . biological_region 184553 184560 0.999 - . logic_name=eponine scaffold_32 . biological_region 184574 184580 0.999 + . logic_name=eponine scaffold_32 . biological_region 185984 185990 0.999 - . logic_name=eponine scaffold_32 . biological_region 186041 186045 0.999 + . logic_name=eponine scaffold_32 . biological_region 187031 187035 0.999 + . logic_name=eponine scaffold_32 . biological_region 187058 187067 0.999 + . logic_name=eponine scaffold_32 . biological_region 187090 187094 0.999 - . logic_name=eponine scaffold_32 . biological_region 187117 187121 0.999 - . logic_name=eponine scaffold_32 . biological_region 187171 187177 0.999 + . logic_name=eponine scaffold_32 . biological_region 187291 187296 0.999 - . logic_name=eponine scaffold_32 . exon 179500 179611 . - . ID=Phyra78510.3;Parent=Phyra78510;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_32 . exon 179699 179779 . - . ID=Phyra78510.2;Parent=Phyra78510;constitutive=1;rank=2 scaffold_32 . exon 179898 179981 . - . ID=Phyra78510.1;Parent=Phyra78510;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 186869 190543 . + . ID=Phyra78512;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000063;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 186869 190543 . + . ID=Phyra78512;Parent=Phyra78512;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 186869 190543 . + 0 ID=Phyra78512;Parent=Phyra78512;rank=1 scaffold_32 . exon 186869 190543 . + . ID=Phyra78512.1;Parent=Phyra78512;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 181361 185986 . - . ID=Phyra95130;biotype=protein_coding;external_name=C_scaffold_32000015;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 181361 185986 . - . ID=Phyra95130;Parent=Phyra95130;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 181361 181587 . - 0 ID=Phyra95130;Parent=Phyra95130;rank=9 scaffold_32 . exon 181361 181587 . - . ID=Phyra95130.9;Parent=Phyra95130;constitutive=1;ensembl_phase=1;rank=9 scaffold_32 . CDS 181627 181743 . - 0 ID=Phyra95130;Parent=Phyra95130;rank=8 scaffold_32 . exon 181627 181743 . - . ID=Phyra95130.8;Parent=Phyra95130;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_32 . CDS 181837 182301 . - 0 ID=Phyra95130;Parent=Phyra95130;rank=7 scaffold_32 . exon 181837 182301 . - . ID=Phyra95130.7;Parent=Phyra95130;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_32 . CDS 182692 183729 . - 0 ID=Phyra95130;Parent=Phyra95130;rank=6 scaffold_32 . exon 182692 183729 . - . ID=Phyra95130.6;Parent=Phyra95130;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_32 . CDS 183949 184196 . - 0 ID=Phyra95130;Parent=Phyra95130;rank=5 scaffold_32 . exon 183949 184196 . - . ID=Phyra95130.5;Parent=Phyra95130;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_32 . CDS 184254 184945 . - 0 ID=Phyra95130;Parent=Phyra95130;rank=4 scaffold_32 . exon 184254 184945 . - . ID=Phyra95130.4;Parent=Phyra95130;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_32 . CDS 185272 185553 . - 0 ID=Phyra95130;Parent=Phyra95130;rank=3 scaffold_32 . exon 185272 185553 . - . ID=Phyra95130.3;Parent=Phyra95130;constitutive=1;rank=3 scaffold_32 . CDS 185630 185775 . - 0 ID=Phyra95130;Parent=Phyra95130;rank=2 scaffold_32 . exon 185630 185775 . - . ID=Phyra95130.2;Parent=Phyra95130;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 185845 185986 . - 0 ID=Phyra95130;Parent=Phyra95130;rank=1 scaffold_32 . exon 185845 185986 . - . ID=Phyra95130.1;Parent=Phyra95130;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . repeat_region 196720 196740 . ? . description=trf scaffold_32 ensembl protein_coding_gene 192401 193983 . + . ID=Phyra78513;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000064;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 192401 193983 . + . ID=Phyra78513;Parent=Phyra78513;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 192401 192603 . + 0 ID=Phyra78513;Parent=Phyra78513;rank=1 scaffold_32 . exon 192401 192603 . + . ID=Phyra78513.1;Parent=Phyra78513;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 192986 193918 . + 0 ID=Phyra78513;Parent=Phyra78513;rank=2 scaffold_32 . exon 192986 193918 . + . ID=Phyra78513.2;Parent=Phyra78513;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_32 . CDS 193959 193983 . + 0 ID=Phyra78513;Parent=Phyra78513;rank=3 scaffold_32 . exon 193959 193983 . + . ID=Phyra78513.3;Parent=Phyra78513;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 ensembl protein_coding_gene 197134 199450 . + . ID=Phyra78515;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000066;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 197134 199450 . + . ID=Phyra78515;Parent=Phyra78515;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 197134 197265 . + 0 ID=Phyra78515;Parent=Phyra78515;rank=1 scaffold_32 . exon 197134 197265 . + . ID=Phyra78515.1;Parent=Phyra78515;constitutive=1;rank=1 scaffold_32 . CDS 197318 199450 . + 0 ID=Phyra78515;Parent=Phyra78515;rank=2 scaffold_32 . exon 197318 199450 . + . ID=Phyra78515.2;Parent=Phyra78515;constitutive=1;rank=2 scaffold_32 ensembl protein_coding_gene 194446 195456 . - . ID=Phyra95132;biotype=protein_coding;external_name=C_scaffold_32000017;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 194446 195456 . - . ID=Phyra95132;Parent=Phyra95132;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 194446 194756 . - 0 ID=Phyra95132;Parent=Phyra95132;rank=3 scaffold_32 . exon 194446 194756 . - . ID=Phyra95132.3;Parent=Phyra95132;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 194825 194951 . - 0 ID=Phyra95132;Parent=Phyra95132;rank=2 scaffold_32 . exon 194825 194951 . - . ID=Phyra95132.2;Parent=Phyra95132;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_32 . CDS 195025 195456 . - 0 ID=Phyra95132;Parent=Phyra95132;rank=1 scaffold_32 . exon 195025 195456 . - . ID=Phyra95132.1;Parent=Phyra95132;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 195625 195979 . + . ID=Phyra95133;biotype=protein_coding;external_name=C_scaffold_32000018;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 195625 195979 . + . ID=Phyra95133;Parent=Phyra95133;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 195625 195744 . + 0 ID=Phyra95133;Parent=Phyra95133;rank=1 scaffold_32 . exon 195625 195744 . + . ID=Phyra95133.1;Parent=Phyra95133;constitutive=1;rank=1 scaffold_32 . CDS 195815 195979 . + 0 ID=Phyra95133;Parent=Phyra95133;rank=2 scaffold_32 . exon 195815 195979 . + . ID=Phyra95133.2;Parent=Phyra95133;constitutive=1;rank=2 scaffold_32 . biological_region 202961 202964 0.999 + . logic_name=eponine scaffold_32 . biological_region 203127 203133 0.999 + . logic_name=eponine scaffold_32 . biological_region 203408 203411 0.999 - . logic_name=eponine scaffold_32 . biological_region 203426 203429 0.999 - . logic_name=eponine scaffold_32 . biological_region 207459 207462 0.999 + . logic_name=eponine scaffold_32 . biological_region 207588 207591 0.999 - . logic_name=eponine scaffold_32 . biological_region 207667 207674 0.999 + . logic_name=eponine scaffold_32 ensembl protein_coding_gene 199645 204012 . - . ID=Phyra78516;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000067;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 199645 204012 . - . ID=Phyra78516;Parent=Phyra78516;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 199645 201957 . - 0 ID=Phyra78516;Parent=Phyra78516;rank=7 scaffold_32 . exon 199645 201957 . - . ID=Phyra78516.7;Parent=Phyra78516;constitutive=1;rank=7 scaffold_32 . CDS 202382 202504 . - 0 ID=Phyra78516;Parent=Phyra78516;rank=6 scaffold_32 . exon 202382 202504 . - . ID=Phyra78516.6;Parent=Phyra78516;constitutive=1;rank=6 scaffold_32 . CDS 202573 202740 . - 0 ID=Phyra78516;Parent=Phyra78516;rank=5 scaffold_32 . exon 202573 202740 . - . ID=Phyra78516.5;Parent=Phyra78516;constitutive=1;rank=5 scaffold_32 . CDS 202814 203225 . - 0 ID=Phyra78516;Parent=Phyra78516;rank=4 scaffold_32 . exon 202814 203225 . - . ID=Phyra78516.4;Parent=Phyra78516;constitutive=1;ensembl_phase=2;rank=4 scaffold_32 . CDS 203245 203613 . - 0 ID=Phyra78516;Parent=Phyra78516;rank=3 scaffold_32 . exon 203245 203613 . - . ID=Phyra78516.3;Parent=Phyra78516;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_32 . CDS 203687 203784 . - 0 ID=Phyra78516;Parent=Phyra78516;rank=2 scaffold_32 . exon 203687 203784 . - . ID=Phyra78516.2;Parent=Phyra78516;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_32 . CDS 203863 204012 . - 0 ID=Phyra78516;Parent=Phyra78516;rank=1 scaffold_32 . exon 203863 204012 . - . ID=Phyra78516.1;Parent=Phyra78516;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 205528 207883 . - . ID=Phyra78518;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000069;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 205528 207883 . - . ID=Phyra78518;Parent=Phyra78518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 205528 205750 . - 0 ID=Phyra78518;Parent=Phyra78518;rank=2 scaffold_32 . exon 205528 205750 . - . ID=Phyra78518.2;Parent=Phyra78518;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 205830 207883 . - 0 ID=Phyra78518;Parent=Phyra78518;rank=1 scaffold_32 . exon 205830 207883 . - . ID=Phyra78518.1;Parent=Phyra78518;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 ensembl protein_coding_gene 208137 208722 . + . ID=Phyra78519;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000070;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 208137 208722 . + . ID=Phyra78519;Parent=Phyra78519;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 208137 208188 . + 0 ID=Phyra78519;Parent=Phyra78519;rank=1 scaffold_32 . exon 208137 208188 . + . ID=Phyra78519.1;Parent=Phyra78519;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 208258 208451 . + 0 ID=Phyra78519;Parent=Phyra78519;rank=2 scaffold_32 . exon 208258 208451 . + . ID=Phyra78519.2;Parent=Phyra78519;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 208528 208722 . + 0 ID=Phyra78519;Parent=Phyra78519;rank=3 scaffold_32 . exon 208528 208722 . + . ID=Phyra78519.3;Parent=Phyra78519;constitutive=1;rank=3 scaffold_32 ensembl protein_coding_gene 204334 204882 . + . ID=Phyra95135;biotype=protein_coding;external_name=C_scaffold_32000020;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 204334 204882 . + . ID=Phyra95135;Parent=Phyra95135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 204334 204882 . + 0 ID=Phyra95135;Parent=Phyra95135;rank=1 scaffold_32 . exon 204334 204882 . + . ID=Phyra95135.1;Parent=Phyra95135;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 210832 212483 . + . ID=Phyra47253;biotype=protein_coding;external_name=gwEuk.32.12.1;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 210832 212483 . + . ID=Phyra47253;Parent=Phyra47253;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 210832 211494 . + 0 ID=Phyra47253;Parent=Phyra47253;rank=1 scaffold_32 . exon 210832 211494 . + . ID=Phyra47253.1;Parent=Phyra47253;constitutive=1;rank=1 scaffold_32 . CDS 211561 211662 . + 0 ID=Phyra47253;Parent=Phyra47253;rank=2 scaffold_32 . exon 211561 211662 . + . ID=Phyra47253.2;Parent=Phyra47253;constitutive=1;rank=2 scaffold_32 . CDS 211730 211914 . + 0 ID=Phyra47253;Parent=Phyra47253;rank=3 scaffold_32 . exon 211730 211914 . + . ID=Phyra47253.3;Parent=Phyra47253;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_32 . CDS 211991 212483 . + 0 ID=Phyra47253;Parent=Phyra47253;rank=4 scaffold_32 . exon 211991 212483 . + . ID=Phyra47253.4;Parent=Phyra47253;constitutive=1;ensembl_phase=2;rank=4 scaffold_32 ensembl protein_coding_gene 209706 210552 . - . ID=Phyra78520;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000071;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 209706 210552 . - . ID=Phyra78520;Parent=Phyra78520;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 209706 209723 . - 0 ID=Phyra78520;Parent=Phyra78520;rank=4 scaffold_32 . exon 209706 209723 . - . ID=Phyra78520.4;Parent=Phyra78520;constitutive=1;rank=4 scaffold_32 . CDS 209797 210218 . - 0 ID=Phyra78520;Parent=Phyra78520;rank=3 scaffold_32 . exon 209797 210218 . - . ID=Phyra78520.3;Parent=Phyra78520;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 210294 210400 . - 0 ID=Phyra78520;Parent=Phyra78520;rank=2 scaffold_32 . exon 210294 210400 . - . ID=Phyra78520.2;Parent=Phyra78520;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 210470 210552 . - 0 ID=Phyra78520;Parent=Phyra78520;rank=1 scaffold_32 . exon 210470 210552 . - . ID=Phyra78520.1;Parent=Phyra78520;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . repeat_region 224672 224680 . ? . description=dust scaffold_32 . repeat_region 225176 225201 . ? . description=trf scaffold_32 . biological_region 226356 226360 0.999 + . logic_name=eponine scaffold_32 . biological_region 226785 226787 0.999 - . logic_name=eponine scaffold_32 . biological_region 227325 227329 0.999 - . logic_name=eponine scaffold_32 . biological_region 227346 227348 0.999 - . logic_name=eponine scaffold_32 . biological_region 228650 228651 0.999 - . logic_name=eponine scaffold_32 . biological_region 228691 228691 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 224800 227112 . - . ID=Phyra78523;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000074;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 224800 227112 . - . ID=Phyra78523;Parent=Phyra78523;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 224800 227112 . - 0 ID=Phyra78523;Parent=Phyra78523;rank=1 scaffold_32 . exon 224800 227112 . - . ID=Phyra78523.1;Parent=Phyra78523;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 227821 230400 . + . ID=Phyra78524;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000075;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 227821 230400 . + . ID=Phyra78524;Parent=Phyra78524;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 227821 230400 . + 0 ID=Phyra78524;Parent=Phyra78524;rank=1 scaffold_32 . exon 227821 230400 . + . ID=Phyra78524.1;Parent=Phyra78524;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 222121 223302 . - . ID=Phyra95137;biotype=protein_coding;external_name=C_scaffold_32000022;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 222121 223302 . - . ID=Phyra95137;Parent=Phyra95137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 222121 222390 . - 0 ID=Phyra95137;Parent=Phyra95137;rank=2 scaffold_32 . exon 222121 222390 . - . ID=Phyra95137.2;Parent=Phyra95137;constitutive=1;rank=2 scaffold_32 . CDS 222712 223302 . - 0 ID=Phyra95137;Parent=Phyra95137;rank=1 scaffold_32 . exon 222712 223302 . - . ID=Phyra95137.1;Parent=Phyra95137;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 230475 231792 . - . ID=Phyra78525;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000076;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 230475 231792 . - . ID=Phyra78525;Parent=Phyra78525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 230475 231455 . - 0 ID=Phyra78525;Parent=Phyra78525;rank=2 scaffold_32 . exon 230475 231455 . - . ID=Phyra78525.2;Parent=Phyra78525;constitutive=1;rank=2 scaffold_32 . CDS 231520 231792 . - 0 ID=Phyra78525;Parent=Phyra78525;rank=1 scaffold_32 . exon 231520 231792 . - . ID=Phyra78525.1;Parent=Phyra78525;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 236314 237513 . - . ID=Phyra78526;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000077;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 236314 237513 . - . ID=Phyra78526;Parent=Phyra78526;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 236314 236639 . - 0 ID=Phyra78526;Parent=Phyra78526;rank=4 scaffold_32 . exon 236314 236639 . - . ID=Phyra78526.4;Parent=Phyra78526;constitutive=1;ensembl_phase=1;rank=4 scaffold_32 . CDS 236811 236957 . - 0 ID=Phyra78526;Parent=Phyra78526;rank=3 scaffold_32 . exon 236811 236957 . - . ID=Phyra78526.3;Parent=Phyra78526;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 237174 237236 . - 0 ID=Phyra78526;Parent=Phyra78526;rank=2 scaffold_32 . exon 237174 237236 . - . ID=Phyra78526.2;Parent=Phyra78526;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 237267 237513 . - 0 ID=Phyra78526;Parent=Phyra78526;rank=1 scaffold_32 . exon 237267 237513 . - . ID=Phyra78526.1;Parent=Phyra78526;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 ensembl protein_coding_gene 239721 239990 . - . ID=Phyra47258;biotype=protein_coding;external_name=gwEuk.32.17.1;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 239721 239990 . - . ID=Phyra47258;Parent=Phyra47258;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 239721 239825 . - 0 ID=Phyra47258;Parent=Phyra47258;rank=2 scaffold_32 . exon 239721 239825 . - . ID=Phyra47258.2;Parent=Phyra47258;constitutive=1;rank=2 scaffold_32 . CDS 239850 239990 . - 0 ID=Phyra47258;Parent=Phyra47258;rank=1 scaffold_32 . exon 239850 239990 . - . ID=Phyra47258.1;Parent=Phyra47258;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 241988 244442 . + . ID=Phyra78527;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000078;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 241988 244442 . + . ID=Phyra78527;Parent=Phyra78527;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 241988 242084 . + 0 ID=Phyra78527;Parent=Phyra78527;rank=1 scaffold_32 . exon 241988 242084 . + . ID=Phyra78527.1;Parent=Phyra78527;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 242118 242909 . + 0 ID=Phyra78527;Parent=Phyra78527;rank=2 scaffold_32 . exon 242118 242909 . + . ID=Phyra78527.2;Parent=Phyra78527;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 243346 243419 . + 0 ID=Phyra78527;Parent=Phyra78527;rank=3 scaffold_32 . exon 243346 243419 . + . ID=Phyra78527.3;Parent=Phyra78527;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 243828 243869 . + 0 ID=Phyra78527;Parent=Phyra78527;rank=4 scaffold_32 . exon 243828 243869 . + . ID=Phyra78527.4;Parent=Phyra78527;constitutive=1;rank=4 scaffold_32 . CDS 244015 244239 . + 0 ID=Phyra78527;Parent=Phyra78527;rank=5 scaffold_32 . exon 244015 244239 . + . ID=Phyra78527.5;Parent=Phyra78527;constitutive=1;rank=5 scaffold_32 . CDS 244359 244442 . + 0 ID=Phyra78527;Parent=Phyra78527;rank=6 scaffold_32 . exon 244359 244442 . + . ID=Phyra78527.6;Parent=Phyra78527;constitutive=1;rank=6 scaffold_32 ensembl protein_coding_gene 248900 249997 . - . ID=Phyra78528;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000079;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 248900 249997 . - . ID=Phyra78528;Parent=Phyra78528;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 248900 249032 . - 0 ID=Phyra78528;Parent=Phyra78528;rank=3 scaffold_32 . exon 248900 249032 . - . ID=Phyra78528.3;Parent=Phyra78528;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 249101 249860 . - 0 ID=Phyra78528;Parent=Phyra78528;rank=2 scaffold_32 . exon 249101 249860 . - . ID=Phyra78528.2;Parent=Phyra78528;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_32 . CDS 249889 249997 . - 0 ID=Phyra78528;Parent=Phyra78528;rank=1 scaffold_32 . biological_region 250580 250583 0.999 + . logic_name=eponine scaffold_32 . biological_region 250706 250711 0.999 - . logic_name=eponine scaffold_32 . biological_region 250968 250969 0.999 + . logic_name=eponine scaffold_32 . biological_region 252861 252864 0.999 - . logic_name=eponine scaffold_32 . biological_region 253525 253526 0.999 + . logic_name=eponine scaffold_32 . repeat_region 253577 253629 . ? . description=trf scaffold_32 . biological_region 254321 254325 0.999 + . logic_name=eponine scaffold_32 . biological_region 254322 254325 0.999 - . logic_name=eponine scaffold_32 . biological_region 254783 254788 0.999 + . logic_name=eponine scaffold_32 . biological_region 255117 255117 0.999 - . logic_name=eponine scaffold_32 . biological_region 255739 255740 0.999 + . logic_name=eponine scaffold_32 . biological_region 255929 255930 0.999 - . logic_name=eponine scaffold_32 . biological_region 256036 256041 0.999 - . logic_name=eponine scaffold_32 . biological_region 258257 258260 0.999 - . logic_name=eponine scaffold_32 . exon 249889 249997 . - . ID=Phyra78528.1;Parent=Phyra78528;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 ensembl protein_coding_gene 250839 251561 . + . ID=Phyra78529;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000080;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 250839 251561 . + . ID=Phyra78529;Parent=Phyra78529;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 250839 251561 . + 0 ID=Phyra78529;Parent=Phyra78529;rank=1 scaffold_32 . exon 250839 251561 . + . ID=Phyra78529.1;Parent=Phyra78529;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 252693 253781 . - . ID=Phyra78530;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000081;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 252693 253781 . - . ID=Phyra78530;Parent=Phyra78530;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 252693 253781 . - 0 ID=Phyra78530;Parent=Phyra78530;rank=1 scaffold_32 . exon 252693 253781 . - . ID=Phyra78530.1;Parent=Phyra78530;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 255770 258361 . - . ID=Phyra78531;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000082;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 255770 258361 . - . ID=Phyra78531;Parent=Phyra78531;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 255770 258361 . - 0 ID=Phyra78531;Parent=Phyra78531;rank=1 scaffold_32 . exon 255770 258361 . - . ID=Phyra78531.1;Parent=Phyra78531;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 258834 259997 . + . ID=Phyra78532;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000083;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 258834 259997 . + . ID=Phyra78532;Parent=Phyra78532;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 258834 259167 . + 0 ID=Phyra78532;Parent=Phyra78532;rank=1 scaffold_32 . exon 258834 259167 . + . ID=Phyra78532.1;Parent=Phyra78532;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 259230 259327 . + 0 ID=Phyra78532;Parent=Phyra78532;rank=2 scaffold_32 . exon 259230 259327 . + . ID=Phyra78532.2;Parent=Phyra78532;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 259390 259527 . + 0 ID=Phyra78532;Parent=Phyra78532;rank=3 scaffold_32 . CDS 259548 259997 . + 0 ID=Phyra78532;Parent=Phyra78532;rank=4 scaffold_32 ensembl pseudogene 260117 260694 . - . ID=Phyra47259;biotype=pseudogene;external_name=gwEuk.32.18.1;logic_name=jgi_phyra1 scaffold_32 ensembl pseudogene 260117 260694 . - . ID=Phyra47259;Parent=Phyra47259;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_32 . exon 260117 260694 . - . ID=Phyra47259.1;Parent=Phyra47259;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . exon 259390 259527 . + . ID=Phyra78532.3;Parent=Phyra78532;constitutive=1;rank=3 scaffold_32 . exon 259548 259997 . + . ID=Phyra78532.4;Parent=Phyra78532;constitutive=1;rank=4 scaffold_32 ensembl protein_coding_gene 263023 265812 . - . ID=Phyra78534;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000085;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 263023 265812 . - . ID=Phyra78534;Parent=Phyra78534;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 263023 265387 . - 0 ID=Phyra78534;Parent=Phyra78534;rank=3 scaffold_32 . exon 263023 265387 . - . ID=Phyra78534.3;Parent=Phyra78534;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 265458 265625 . - 0 ID=Phyra78534;Parent=Phyra78534;rank=2 scaffold_32 . exon 265458 265625 . - . ID=Phyra78534.2;Parent=Phyra78534;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_32 . CDS 265697 265812 . - 0 ID=Phyra78534;Parent=Phyra78534;rank=1 scaffold_32 . exon 265697 265812 . - . ID=Phyra78534.1;Parent=Phyra78534;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 ensembl protein_coding_gene 266264 267463 . + . ID=Phyra95146;biotype=protein_coding;external_name=C_scaffold_32000031;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 266264 267463 . + . ID=Phyra95146;Parent=Phyra95146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 266264 267120 . + 0 ID=Phyra95146;Parent=Phyra95146;rank=1 scaffold_32 . exon 266264 267120 . + . ID=Phyra95146.1;Parent=Phyra95146;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 267193 267463 . + 0 ID=Phyra95146;Parent=Phyra95146;rank=2 scaffold_32 . exon 267193 267463 . + . ID=Phyra95146.2;Parent=Phyra95146;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 ensembl protein_coding_gene 268204 269263 . + . ID=Phyra95147;biotype=protein_coding;external_name=C_scaffold_32000032;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 268204 269263 . + . ID=Phyra95147;Parent=Phyra95147;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 268204 269097 . + 0 ID=Phyra95147;Parent=Phyra95147;rank=1 scaffold_32 . exon 268204 269097 . + . ID=Phyra95147.1;Parent=Phyra95147;constitutive=1;rank=1 scaffold_32 . CDS 269168 269263 . + 0 ID=Phyra95147;Parent=Phyra95147;rank=2 scaffold_32 . exon 269168 269263 . + . ID=Phyra95147.2;Parent=Phyra95147;constitutive=1;rank=2 scaffold_32 . biological_region 269483 269488 0.999 + . logic_name=eponine scaffold_32 . biological_region 271989 271994 0.999 + . logic_name=eponine scaffold_32 . biological_region 274865 274865 0.999 + . logic_name=eponine scaffold_32 . biological_region 277653 277656 0.999 + . logic_name=eponine scaffold_32 . biological_region 277791 277795 0.999 - . logic_name=eponine scaffold_32 . biological_region 278706 278707 0.999 - . logic_name=eponine scaffold_32 . repeat_region 279046 279180 . ? . description=dust scaffold_32 ensembl protein_coding_gene 269422 282563 . + . ID=Phyra95148;biotype=protein_coding;external_name=C_scaffold_32000033;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 269422 282563 . + . ID=Phyra95148;Parent=Phyra95148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 269422 269561 . + 0 ID=Phyra95148;Parent=Phyra95148;rank=1 scaffold_32 . exon 269422 269561 . + . ID=Phyra95148.1;Parent=Phyra95148;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 269630 270893 . + 0 ID=Phyra95148;Parent=Phyra95148;rank=2 scaffold_32 . exon 269630 270893 . + . ID=Phyra95148.2;Parent=Phyra95148;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 270930 272141 . + 0 ID=Phyra95148;Parent=Phyra95148;rank=3 scaffold_32 . exon 270930 272141 . + . ID=Phyra95148.3;Parent=Phyra95148;constitutive=1;rank=3 scaffold_32 . CDS 272199 279030 . + 0 ID=Phyra95148;Parent=Phyra95148;rank=4 scaffold_32 . exon 272199 279030 . + . ID=Phyra95148.4;Parent=Phyra95148;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_32 . CDS 279253 282563 . + 0 ID=Phyra95148;Parent=Phyra95148;rank=5 scaffold_32 ensembl protein_coding_gene 282892 283762 . - . ID=Phyra78538;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000089;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 282892 283762 . - . ID=Phyra78538;Parent=Phyra78538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 282892 282916 . - 0 ID=Phyra78538;Parent=Phyra78538;rank=2 scaffold_32 . exon 282892 282916 . - . ID=Phyra78538.2;Parent=Phyra78538;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 283032 283762 . - 0 ID=Phyra78538;Parent=Phyra78538;rank=1 scaffold_32 . exon 283032 283762 . - . ID=Phyra78538.1;Parent=Phyra78538;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 ensembl protein_coding_gene 284145 284552 . - . ID=Phyra78539;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000090;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 284145 284552 . - . ID=Phyra78539;Parent=Phyra78539;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 284145 284552 . - 0 ID=Phyra78539;Parent=Phyra78539;rank=1 scaffold_32 . exon 284145 284552 . - . ID=Phyra78539.1;Parent=Phyra78539;constitutive=1;rank=1 scaffold_32 . exon 279253 282563 . + . ID=Phyra95148.5;Parent=Phyra95148;constitutive=1;ensembl_phase=1;rank=5 scaffold_32 . repeat_region 293184 293199 . ? . description=dust scaffold_32 . repeat_region 294067 294075 . ? . description=dust scaffold_32 . repeat_region 294357 294371 . ? . description=dust scaffold_32 . repeat_region 294987 294996 . ? . description=dust scaffold_32 . biological_region 296909 296911 0.999 - . logic_name=eponine scaffold_32 . repeat_region 297738 297765 . ? . description=trf scaffold_32 . repeat_region 297738 297765 . ? . description=dust scaffold_32 . repeat_region 298139 298148 . ? . description=dust scaffold_32 ensembl protein_coding_gene 290101 291014 . + . ID=Phyra78540;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000091;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 290101 291014 . + . ID=Phyra78540;Parent=Phyra78540;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 290101 290201 . + 0 ID=Phyra78540;Parent=Phyra78540;rank=1 scaffold_32 . exon 290101 290201 . + . ID=Phyra78540.1;Parent=Phyra78540;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 290315 290656 . + 0 ID=Phyra78540;Parent=Phyra78540;rank=2 scaffold_32 . exon 290315 290656 . + . ID=Phyra78540.2;Parent=Phyra78540;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_32 . CDS 290684 291014 . + 0 ID=Phyra78540;Parent=Phyra78540;rank=3 scaffold_32 . exon 290684 291014 . + . ID=Phyra78540.3;Parent=Phyra78540;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 ensembl protein_coding_gene 296262 297294 . + . ID=Phyra78541;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000092;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 296262 297294 . + . ID=Phyra78541;Parent=Phyra78541;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 296262 296496 . + 0 ID=Phyra78541;Parent=Phyra78541;rank=1 scaffold_32 . exon 296262 296496 . + . ID=Phyra78541.1;Parent=Phyra78541;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 296534 297294 . + 0 ID=Phyra78541;Parent=Phyra78541;rank=2 scaffold_32 . exon 296534 297294 . + . ID=Phyra78541.2;Parent=Phyra78541;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 ensembl protein_coding_gene 303291 305686 . + . ID=Phyra78542;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000093;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 303291 305686 . + . ID=Phyra78542;Parent=Phyra78542;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 303291 303878 . + 0 ID=Phyra78542;Parent=Phyra78542;rank=1 scaffold_32 . exon 303291 303878 . + . ID=Phyra78542.1;Parent=Phyra78542;constitutive=1;rank=1 scaffold_32 . CDS 304001 304144 . + 0 ID=Phyra78542;Parent=Phyra78542;rank=2 scaffold_32 . exon 304001 304144 . + . ID=Phyra78542.2;Parent=Phyra78542;constitutive=1;rank=2 scaffold_32 . CDS 304344 305138 . + 0 ID=Phyra78542;Parent=Phyra78542;rank=3 scaffold_32 . exon 304344 305138 . + . ID=Phyra78542.3;Parent=Phyra78542;constitutive=1;rank=3 scaffold_32 . CDS 305380 305589 . + 0 ID=Phyra78542;Parent=Phyra78542;rank=4 scaffold_32 . exon 305380 305589 . + . ID=Phyra78542.4;Parent=Phyra78542;constitutive=1;rank=4 scaffold_32 . CDS 305648 305686 . + 0 ID=Phyra78542;Parent=Phyra78542;rank=5 scaffold_32 . exon 305648 305686 . + . ID=Phyra78542.5;Parent=Phyra78542;constitutive=1;rank=5 scaffold_32 . repeat_region 309524 309686 . ? . description=dust scaffold_32 . biological_region 312546 312548 0.999 + . logic_name=eponine scaffold_32 . repeat_region 314595 314618 . ? . description=trf scaffold_32 ensembl protein_coding_gene 311428 313824 . - . ID=Phyra78543;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000094;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 311428 313824 . - . ID=Phyra78543;Parent=Phyra78543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 311428 311466 . - 0 ID=Phyra78543;Parent=Phyra78543;rank=5 scaffold_32 . exon 311428 311466 . - . ID=Phyra78543.5;Parent=Phyra78543;constitutive=1;rank=5 scaffold_32 . CDS 311525 311734 . - 0 ID=Phyra78543;Parent=Phyra78543;rank=4 scaffold_32 . exon 311525 311734 . - . ID=Phyra78543.4;Parent=Phyra78543;constitutive=1;rank=4 scaffold_32 . CDS 311977 312771 . - 0 ID=Phyra78543;Parent=Phyra78543;rank=3 scaffold_32 . exon 311977 312771 . - . ID=Phyra78543.3;Parent=Phyra78543;constitutive=1;rank=3 scaffold_32 . CDS 312971 313114 . - 0 ID=Phyra78543;Parent=Phyra78543;rank=2 scaffold_32 . exon 312971 313114 . - . ID=Phyra78543.2;Parent=Phyra78543;constitutive=1;rank=2 scaffold_32 . CDS 313237 313824 . - 0 ID=Phyra78543;Parent=Phyra78543;rank=1 scaffold_32 . exon 313237 313824 . - . ID=Phyra78543.1;Parent=Phyra78543;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 316728 317138 . - . ID=Phyra78544;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000095;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 316728 317138 . - . ID=Phyra78544;Parent=Phyra78544;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 316728 317138 . - 0 ID=Phyra78544;Parent=Phyra78544;rank=1 scaffold_32 . exon 316728 317138 . - . ID=Phyra78544.1;Parent=Phyra78544;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 321399 324328 . + . ID=Phyra78547;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000098;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 321399 324328 . + . ID=Phyra78547;Parent=Phyra78547;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 321399 321485 . + 0 ID=Phyra78547;Parent=Phyra78547;rank=1 scaffold_32 . exon 321399 321485 . + . ID=Phyra78547.1;Parent=Phyra78547;constitutive=1;rank=1 scaffold_32 . CDS 321539 321595 . + 0 ID=Phyra78547;Parent=Phyra78547;rank=2 scaffold_32 . exon 321539 321595 . + . ID=Phyra78547.2;Parent=Phyra78547;constitutive=1;rank=2 scaffold_32 . CDS 321629 322115 . + 0 ID=Phyra78547;Parent=Phyra78547;rank=3 scaffold_32 . exon 321629 322115 . + . ID=Phyra78547.3;Parent=Phyra78547;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_32 . CDS 322185 324328 . + 0 ID=Phyra78547;Parent=Phyra78547;rank=4 scaffold_32 . exon 322185 324328 . + . ID=Phyra78547.4;Parent=Phyra78547;constitutive=1;ensembl_phase=1;rank=4 scaffold_32 ensembl protein_coding_gene 324448 325933 . - . ID=Phyra78548;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000099;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 324448 325933 . - . ID=Phyra78548;Parent=Phyra78548;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 324448 324490 . - 0 ID=Phyra78548;Parent=Phyra78548;rank=9 scaffold_32 . exon 324448 324490 . - . ID=Phyra78548.9;Parent=Phyra78548;constitutive=1;ensembl_phase=2;rank=9 scaffold_32 . CDS 324570 324628 . - 0 ID=Phyra78548;Parent=Phyra78548;rank=8 scaffold_32 . exon 324570 324628 . - . ID=Phyra78548.8;Parent=Phyra78548;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_32 . CDS 324691 324765 . - 0 ID=Phyra78548;Parent=Phyra78548;rank=7 scaffold_32 . exon 324691 324765 . - . ID=Phyra78548.7;Parent=Phyra78548;constitutive=1;rank=7 scaffold_32 . CDS 324830 324904 . - 0 ID=Phyra78548;Parent=Phyra78548;rank=6 scaffold_32 . exon 324830 324904 . - . ID=Phyra78548.6;Parent=Phyra78548;constitutive=1;rank=6 scaffold_32 . CDS 324973 325063 . - 0 ID=Phyra78548;Parent=Phyra78548;rank=5 scaffold_32 . exon 324973 325063 . - . ID=Phyra78548.5;Parent=Phyra78548;constitutive=1;ensembl_phase=2;rank=5 scaffold_32 . CDS 325221 325336 . - 0 ID=Phyra78548;Parent=Phyra78548;rank=4 scaffold_32 . exon 325221 325336 . - . ID=Phyra78548.4;Parent=Phyra78548;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_32 . CDS 325402 325503 . - 0 ID=Phyra78548;Parent=Phyra78548;rank=3 scaffold_32 . exon 325402 325503 . - . ID=Phyra78548.3;Parent=Phyra78548;constitutive=1;rank=3 scaffold_32 . CDS 325580 325826 . - 0 ID=Phyra78548;Parent=Phyra78548;rank=2 scaffold_32 . exon 325580 325826 . - . ID=Phyra78548.2;Parent=Phyra78548;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 325896 325933 . - 0 ID=Phyra78548;Parent=Phyra78548;rank=1 scaffold_32 . exon 325896 325933 . - . ID=Phyra78548.1;Parent=Phyra78548;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 ensembl protein_coding_gene 326335 327978 . + . ID=Phyra78549;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000100;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 326335 327978 . + . ID=Phyra78549;Parent=Phyra78549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 326335 327978 . + 0 ID=Phyra78549;Parent=Phyra78549;rank=1 scaffold_32 . exon 326335 327978 . + . ID=Phyra78549.1;Parent=Phyra78549;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 319354 320014 . + . ID=Phyra95149;biotype=protein_coding;external_name=C_scaffold_32000034;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 319354 320014 . + . ID=Phyra95149;Parent=Phyra95149;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 319354 319440 . + 0 ID=Phyra95149;Parent=Phyra95149;rank=1 scaffold_32 . exon 319354 319440 . + . ID=Phyra95149.1;Parent=Phyra95149;constitutive=1;rank=1 scaffold_32 . CDS 319462 319683 . + 0 ID=Phyra95149;Parent=Phyra95149;rank=2 scaffold_32 . exon 319462 319683 . + . ID=Phyra95149.2;Parent=Phyra95149;constitutive=1;rank=2 scaffold_32 . CDS 319754 320014 . + 0 ID=Phyra95149;Parent=Phyra95149;rank=3 scaffold_32 . exon 319754 320014 . + . ID=Phyra95149.3;Parent=Phyra95149;constitutive=1;rank=3 scaffold_32 ensembl protein_coding_gene 320269 320962 . - . ID=Phyra95150;biotype=protein_coding;external_name=C_scaffold_32000035;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 320269 320962 . - . ID=Phyra95150;Parent=Phyra95150;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 320269 320415 . - 0 ID=Phyra95150;Parent=Phyra95150;rank=2 scaffold_32 . exon 320269 320415 . - . ID=Phyra95150.2;Parent=Phyra95150;constitutive=1;rank=2 scaffold_32 . CDS 320486 320962 . - 0 ID=Phyra95150;Parent=Phyra95150;rank=1 scaffold_32 . exon 320486 320962 . - . ID=Phyra95150.1;Parent=Phyra95150;constitutive=1;rank=1 scaffold_32 . biological_region 335743 335746 0.999 - . logic_name=eponine scaffold_32 . biological_region 336144 336147 0.999 - . logic_name=eponine scaffold_32 . biological_region 337104 337108 0.999 + . logic_name=eponine scaffold_32 . biological_region 337355 337358 0.999 - . logic_name=eponine scaffold_32 . biological_region 337425 337426 0.999 - . logic_name=eponine scaffold_32 . biological_region 337781 337782 0.999 + . logic_name=eponine scaffold_32 ensembl protein_coding_gene 329267 333363 . + . ID=Phyra78550;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000101;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 329267 333363 . + . ID=Phyra78550;Parent=Phyra78550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 329267 330252 . + 0 ID=Phyra78550;Parent=Phyra78550;rank=1 scaffold_32 . exon 329267 330252 . + . ID=Phyra78550.1;Parent=Phyra78550;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 330324 333363 . + 0 ID=Phyra78550;Parent=Phyra78550;rank=2 scaffold_32 . exon 330324 333363 . + . ID=Phyra78550.2;Parent=Phyra78550;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 ensembl protein_coding_gene 333540 334846 . - . ID=Phyra78551;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000102;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 333540 334846 . - . ID=Phyra78551;Parent=Phyra78551;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 333540 333700 . - 0 ID=Phyra78551;Parent=Phyra78551;rank=7 scaffold_32 . exon 333540 333700 . - . ID=Phyra78551.7;Parent=Phyra78551;constitutive=1;ensembl_phase=1;rank=7 scaffold_32 . CDS 333772 333948 . - 0 ID=Phyra78551;Parent=Phyra78551;rank=6 scaffold_32 . exon 333772 333948 . - . ID=Phyra78551.6;Parent=Phyra78551;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_32 . CDS 334008 334164 . - 0 ID=Phyra78551;Parent=Phyra78551;rank=5 scaffold_32 . exon 334008 334164 . - . ID=Phyra78551.5;Parent=Phyra78551;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_32 . CDS 334227 334311 . - 0 ID=Phyra78551;Parent=Phyra78551;rank=4 scaffold_32 . exon 334227 334311 . - . ID=Phyra78551.4;Parent=Phyra78551;constitutive=1;ensembl_phase=2;rank=4 scaffold_32 . CDS 334377 334471 . - 0 ID=Phyra78551;Parent=Phyra78551;rank=3 scaffold_32 . exon 334377 334471 . - . ID=Phyra78551.3;Parent=Phyra78551;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_32 . CDS 334534 334677 . - 0 ID=Phyra78551;Parent=Phyra78551;rank=2 scaffold_32 . exon 334534 334677 . - . ID=Phyra78551.2;Parent=Phyra78551;constitutive=1;rank=2 scaffold_32 . CDS 334745 334846 . - 0 ID=Phyra78551;Parent=Phyra78551;rank=1 scaffold_32 . exon 334745 334846 . - . ID=Phyra78551.1;Parent=Phyra78551;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 335149 338662 . - . ID=Phyra95152;biotype=protein_coding;external_name=C_scaffold_32000037;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 335149 338662 . - . ID=Phyra95152;Parent=Phyra95152;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 335149 335868 . - 0 ID=Phyra95152;Parent=Phyra95152;rank=9 scaffold_32 . exon 335149 335868 . - . ID=Phyra95152.9;Parent=Phyra95152;constitutive=1;rank=9 scaffold_32 . CDS 335932 336459 . - 0 ID=Phyra95152;Parent=Phyra95152;rank=8 scaffold_32 . exon 335932 336459 . - . ID=Phyra95152.8;Parent=Phyra95152;constitutive=1;rank=8 scaffold_32 . CDS 336524 336704 . - 0 ID=Phyra95152;Parent=Phyra95152;rank=7 scaffold_32 . exon 336524 336704 . - . ID=Phyra95152.7;Parent=Phyra95152;constitutive=1;ensembl_phase=2;rank=7 scaffold_32 . CDS 336913 336996 . - 0 ID=Phyra95152;Parent=Phyra95152;rank=6 scaffold_32 . exon 336913 336996 . - . ID=Phyra95152.6;Parent=Phyra95152;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_32 . CDS 337036 337413 . - 0 ID=Phyra95152;Parent=Phyra95152;rank=5 scaffold_32 . exon 337036 337413 . - . ID=Phyra95152.5;Parent=Phyra95152;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_32 . CDS 337597 337874 . - 0 ID=Phyra95152;Parent=Phyra95152;rank=4 scaffold_32 . exon 337597 337874 . - . ID=Phyra95152.4;Parent=Phyra95152;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_32 . CDS 337900 338020 . - 0 ID=Phyra95152;Parent=Phyra95152;rank=3 scaffold_32 . exon 337900 338020 . - . ID=Phyra95152.3;Parent=Phyra95152;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 338079 338284 . - 0 ID=Phyra95152;Parent=Phyra95152;rank=2 scaffold_32 . exon 338079 338284 . - . ID=Phyra95152.2;Parent=Phyra95152;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_32 . CDS 338306 338662 . - 0 ID=Phyra95152;Parent=Phyra95152;rank=1 scaffold_32 . exon 338306 338662 . - . ID=Phyra95152.1;Parent=Phyra95152;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 338824 339959 . + . ID=Phyra95154;biotype=protein_coding;external_name=C_scaffold_32000039;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 338824 339959 . + . ID=Phyra95154;Parent=Phyra95154;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 338824 339147 . + 0 ID=Phyra95154;Parent=Phyra95154;rank=1 scaffold_32 . exon 338824 339147 . + . ID=Phyra95154.1;Parent=Phyra95154;constitutive=1;rank=1 scaffold_32 . CDS 339214 339565 . + 0 ID=Phyra95154;Parent=Phyra95154;rank=2 scaffold_32 . CDS 339611 339786 . + 0 ID=Phyra95154;Parent=Phyra95154;rank=3 scaffold_32 . CDS 339858 339959 . + 0 ID=Phyra95154;Parent=Phyra95154;rank=4 scaffold_32 . repeat_region 341316 341367 . ? . description=dust scaffold_32 . repeat_region 343227 343306 . ? . description=trf scaffold_32 . repeat_region 343230 343293 . ? . description=dust scaffold_32 . repeat_region 343236 343309 . ? . description=trf scaffold_32 . repeat_region 343239 343310 . ? . description=trf scaffold_32 . repeat_region 344672 344802 . ? . description=trf scaffold_32 . repeat_region 344735 344850 . ? . description=trf scaffold_32 . repeat_region 344788 344850 . ? . description=trf scaffold_32 . repeat_region 344798 344850 . ? . description=dust scaffold_32 . repeat_region 346196 346244 . ? . description=trf scaffold_32 . repeat_region 346200 346346 . ? . description=trf scaffold_32 . repeat_region 346238 346297 . ? . description=dust scaffold_32 . repeat_region 346240 346276 . ? . description=trf scaffold_32 . repeat_region 346266 346324 . ? . description=trf scaffold_32 . repeat_region 346335 346360 . ? . description=trf scaffold_32 . repeat_region 346335 346360 . ? . description=dust scaffold_32 . repeat_region 348361 348386 . ? . description=trf scaffold_32 . repeat_region 348361 348386 . ? . description=dust scaffold_32 . repeat_region 348397 348457 . ? . description=trf scaffold_32 . repeat_region 348400 348551 . ? . description=trf scaffold_32 . repeat_region 348422 348482 . ? . description=dust scaffold_32 . repeat_region 348445 348481 . ? . description=trf scaffold_32 . repeat_region 348477 348525 . ? . description=trf scaffold_32 ensembl protein_coding_gene 344719 345204 . - . ID=Phyra47302;biotype=protein_coding;description=Putative elicitin protein RAM5 [Source:UniProtKB/TrEMBL%3BAcc:Q2N092];external_name=gwEuk.32.61.1;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 344719 345204 . - . ID=Phyra47302;Parent=Phyra47302;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 344719 345204 . - 0 ID=Phyra47302;Parent=Phyra47302;rank=1 scaffold_32 . exon 344719 345204 . - . ID=Phyra47302.1;Parent=Phyra47302;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 346365 346715 . - . ID=Phyra47306;biotype=protein_coding;description=Putative elicitin protein RAM2D [Source:UniProtKB/TrEMBL%3BAcc:Q2N099];external_name=gwEuk.32.65.1;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 346365 346715 . - . ID=Phyra47306;Parent=Phyra47306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 346365 346715 . - 0 ID=Phyra47306;Parent=Phyra47306;rank=1 scaffold_32 . exon 346365 346715 . - . ID=Phyra47306.1;Parent=Phyra47306;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 348006 348356 . + . ID=Phyra47311;biotype=protein_coding;description=Putative elicitin protein RAM2D [Source:UniProtKB/TrEMBL%3BAcc:Q2N099];external_name=gwEuk.32.70.1;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 348006 348356 . + . ID=Phyra47311;Parent=Phyra47311;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 348006 348356 . + 0 ID=Phyra47311;Parent=Phyra47311;rank=1 scaffold_32 . exon 348006 348356 . + . ID=Phyra47311.1;Parent=Phyra47311;constitutive=1;rank=1 scaffold_32 . exon 339214 339565 . + . ID=Phyra95154.2;Parent=Phyra95154;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_32 . exon 339611 339786 . + . ID=Phyra95154.3;Parent=Phyra95154;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . exon 339858 339959 . + . ID=Phyra95154.4;Parent=Phyra95154;constitutive=1;rank=4 scaffold_32 ensembl protein_coding_gene 349027 349585 . - . ID=Phyra78558;biotype=protein_coding;description=Putative elicitin protein RAM3D [Source:UniProtKB/TrEMBL%3BAcc:Q2N094];external_name=fgenesh1_pg.C_scaffold_32000109;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 349027 349585 . - . ID=Phyra78558;Parent=Phyra78558;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 349027 349057 . - 0 ID=Phyra78558;Parent=Phyra78558;rank=2 scaffold_32 . exon 349027 349057 . - . ID=Phyra78558.2;Parent=Phyra78558;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 349257 349585 . - 0 ID=Phyra78558;Parent=Phyra78558;rank=1 scaffold_32 . exon 349257 349585 . - . ID=Phyra78558.1;Parent=Phyra78558;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 ensembl protein_coding_gene 352964 353613 . + . ID=Phyra78559;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000110;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 352964 353613 . + . ID=Phyra78559;Parent=Phyra78559;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 352964 353018 . + 0 ID=Phyra78559;Parent=Phyra78559;rank=1 scaffold_32 . exon 352964 353018 . + . ID=Phyra78559.1;Parent=Phyra78559;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 353098 353328 . + 0 ID=Phyra78559;Parent=Phyra78559;rank=2 scaffold_32 . exon 353098 353328 . + . ID=Phyra78559.2;Parent=Phyra78559;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 353415 353528 . + 0 ID=Phyra78559;Parent=Phyra78559;rank=3 scaffold_32 . exon 353415 353528 . + . ID=Phyra78559.3;Parent=Phyra78559;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 353573 353613 . + 0 ID=Phyra78559;Parent=Phyra78559;rank=4 scaffold_32 . exon 353573 353613 . + . ID=Phyra78559.4;Parent=Phyra78559;constitutive=1;ensembl_phase=1;rank=4 scaffold_32 ensembl protein_coding_gene 355520 356644 . + . ID=Phyra78560;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000111;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 355520 356644 . + . ID=Phyra78560;Parent=Phyra78560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 355520 355574 . + 0 ID=Phyra78560;Parent=Phyra78560;rank=1 scaffold_32 . exon 355520 355574 . + . ID=Phyra78560.1;Parent=Phyra78560;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 355654 355884 . + 0 ID=Phyra78560;Parent=Phyra78560;rank=2 scaffold_32 . exon 355654 355884 . + . ID=Phyra78560.2;Parent=Phyra78560;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 355971 356084 . + 0 ID=Phyra78560;Parent=Phyra78560;rank=3 scaffold_32 . exon 355971 356084 . + . ID=Phyra78560.3;Parent=Phyra78560;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 356610 356644 . + 0 ID=Phyra78560;Parent=Phyra78560;rank=4 scaffold_32 . exon 356610 356644 . + . ID=Phyra78560.4;Parent=Phyra78560;constitutive=1;ensembl_phase=1;rank=4 scaffold_32 . repeat_region 359078 359101 . ? . description=trf scaffold_32 . repeat_region 362938 362945 . ? . description=dust scaffold_32 . repeat_region 363895 363903 . ? . description=dust scaffold_32 . repeat_region 367487 367536 . ? . description=dust scaffold_32 . repeat_region 368731 368780 . ? . description=dust scaffold_32 . repeat_region 368782 368802 . ? . description=trf scaffold_32 . repeat_region 368784 368802 . ? . description=dust scaffold_32 ensembl protein_coding_gene 367910 369869 . + . ID=Phyra78561;biotype=protein_coding;description=Putative elicitin protein RAM2APutative elicitin protein RAM2BPutative elicitin protein RAM2C [Source:UniProtKB/TrEMBL%3BAcc:Q2N0A1];external_name=fgenesh1_pg.C_scaffold_32000112;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 367910 369869 . + . ID=Phyra78561;Parent=Phyra78561;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 367910 368727 . + 0 ID=Phyra78561;Parent=Phyra78561;rank=1 scaffold_32 . exon 367910 368727 . + . ID=Phyra78561.1;Parent=Phyra78561;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 369027 369154 . + 0 ID=Phyra78561;Parent=Phyra78561;rank=2 scaffold_32 . CDS 369289 369869 . + 0 ID=Phyra78561;Parent=Phyra78561;rank=3 scaffold_32 ensembl protein_coding_gene 377091 377708 . - . ID=Phyra71635;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_32000017;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 377091 377708 . - . ID=Phyra71635;Parent=Phyra71635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 377091 377146 . - 0 ID=Phyra71635;Parent=Phyra71635;rank=2 scaffold_32 . exon 377091 377146 . - . ID=Phyra71635.2;Parent=Phyra71635;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 377186 377708 . - 0 ID=Phyra71635;Parent=Phyra71635;rank=1 scaffold_32 . exon 377186 377708 . - . ID=Phyra71635.1;Parent=Phyra71635;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . exon 369027 369154 . + . ID=Phyra78561.2;Parent=Phyra78561;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_32 . exon 369289 369869 . + . ID=Phyra78561.3;Parent=Phyra78561;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 ensembl protein_coding_gene 370712 371616 . + . ID=Phyra78562;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000113;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 370712 371616 . + . ID=Phyra78562;Parent=Phyra78562;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 370712 371326 . + 0 ID=Phyra78562;Parent=Phyra78562;rank=1 scaffold_32 . exon 370712 371326 . + . ID=Phyra78562.1;Parent=Phyra78562;constitutive=1;rank=1 scaffold_32 . CDS 371455 371616 . + 0 ID=Phyra78562;Parent=Phyra78562;rank=2 scaffold_32 . exon 371455 371616 . + . ID=Phyra78562.2;Parent=Phyra78562;constitutive=1;rank=2 scaffold_32 ensembl protein_coding_gene 372070 373458 . - . ID=Phyra78563;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000114;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 372070 373458 . - . ID=Phyra78563;Parent=Phyra78563;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 372070 373458 . - 0 ID=Phyra78563;Parent=Phyra78563;rank=1 scaffold_32 . exon 372070 373458 . - . ID=Phyra78563.1;Parent=Phyra78563;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 373851 375984 . - . ID=Phyra78564;biotype=protein_coding;description=Putative elicitin protein RAM3B [Source:UniProtKB/TrEMBL%3BAcc:Q2N096];external_name=fgenesh1_pg.C_scaffold_32000115;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 373851 375984 . - . ID=Phyra78564;Parent=Phyra78564;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 373851 375265 . - 0 ID=Phyra78564;Parent=Phyra78564;rank=2 scaffold_32 . exon 373851 375265 . - . ID=Phyra78564.2;Parent=Phyra78564;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 375375 375984 . - 0 ID=Phyra78564;Parent=Phyra78564;rank=1 scaffold_32 . exon 375375 375984 . - . ID=Phyra78564.1;Parent=Phyra78564;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . repeat_region 379119 379168 . ? . description=dust scaffold_32 . biological_region 379650 379653 0.999 - . logic_name=eponine scaffold_32 . repeat_region 380259 380306 . ? . description=trf scaffold_32 . repeat_region 380268 380327 . ? . description=dust scaffold_32 . repeat_region 380289 380368 . ? . description=trf scaffold_32 . repeat_region 382659 383009 . ? . description=trf scaffold_32 . repeat_region 382666 382724 . ? . description=trf scaffold_32 . repeat_region 382738 383132 . ? . description=trf scaffold_32 . repeat_region 382744 383132 . ? . description=trf scaffold_32 . repeat_region 382862 383138 . ? . description=trf scaffold_32 . biological_region 383988 383990 0.999 + . logic_name=eponine scaffold_32 . repeat_region 384299 384351 . ? . description=dust scaffold_32 . biological_region 384650 384651 0.999 + . logic_name=eponine scaffold_32 . biological_region 385134 385135 0.999 + . logic_name=eponine scaffold_32 . repeat_region 386028 386063 . ? . description=trf scaffold_32 . repeat_region 387093 387121 . ? . description=trf scaffold_32 . biological_region 387260 387262 0.999 + . logic_name=eponine scaffold_32 . repeat_region 387498 390801 . ? . description=dust scaffold_32 ensembl protein_coding_gene 380373 380663 . - . ID=Phyra47343;biotype=protein_coding;external_name=gwEuk.32.102.1;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 380373 380663 . - . ID=Phyra47343;Parent=Phyra47343;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 380373 380663 . - 0 ID=Phyra47343;Parent=Phyra47343;rank=1 scaffold_32 . exon 380373 380663 . - . ID=Phyra47343.1;Parent=Phyra47343;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 379169 379438 . + . ID=Phyra47349;biotype=protein_coding;external_name=gwEuk.32.108.1;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 379169 379438 . + . ID=Phyra47349;Parent=Phyra47349;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 379169 379438 . + 0 ID=Phyra47349;Parent=Phyra47349;rank=1 scaffold_32 . exon 379169 379438 . + . ID=Phyra47349.1;Parent=Phyra47349;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 382288 382785 . + . ID=Phyra47356;biotype=protein_coding;description=Putative elicitin protein RAM6 [Source:UniProtKB/TrEMBL%3BAcc:Q2N091];external_name=gwEuk.32.115.1;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 382288 382785 . + . ID=Phyra47356;Parent=Phyra47356;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 382288 382785 . + 0 ID=Phyra47356;Parent=Phyra47356;rank=1 scaffold_32 . exon 382288 382785 . + . ID=Phyra47356.1;Parent=Phyra47356;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 384002 384358 . - . ID=Phyra71636;biotype=protein_coding;description=Alpha elicitin 2Putative elicitin protein RAM1E [Source:UniProtKB/TrEMBL%3BAcc:Q2N0A3];external_name=fgenesh1_pm.C_scaffold_32000018;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 384002 384358 . - . ID=Phyra71636;Parent=Phyra71636;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 384002 384358 . - 0 ID=Phyra71636;Parent=Phyra71636;rank=1 scaffold_32 . exon 384002 384358 . - . ID=Phyra71636.1;Parent=Phyra71636;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 385082 385438 . - . ID=Phyra78569;biotype=protein_coding;description=Alpha elicitin 1Putative elicitin protein RAM1BPutative elicitin protein RAM1C [Source:UniProtKB/TrEMBL%3BAcc:Q2N0A5];external_name=fgenesh1_pg.C_scaffold_32000120;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 385082 385438 . - . ID=Phyra78569;Parent=Phyra78569;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 385082 385438 . - 0 ID=Phyra78569;Parent=Phyra78569;rank=1 scaffold_32 . exon 385082 385438 . - . ID=Phyra78569.1;Parent=Phyra78569;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 392412 392765 . + . ID=Phyra47376;biotype=protein_coding;description=Putative elicitin protein RAM1D [Source:UniProtKB/TrEMBL%3BAcc:Q2N0A4];external_name=gwEuk.32.135.1;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 392412 392765 . + . ID=Phyra47376;Parent=Phyra47376;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 392412 392765 . + 0 ID=Phyra47376;Parent=Phyra47376;rank=1 scaffold_32 . exon 392412 392765 . + . ID=Phyra47376.1;Parent=Phyra47376;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 394600 394956 . + . ID=Phyra71638;biotype=protein_coding;description=Alpha elicitin 1Putative elicitin protein RAM1BPutative elicitin protein RAM1C [Source:UniProtKB/TrEMBL%3BAcc:Q2N0A5];external_name=fgenesh1_pm.C_scaffold_32000020;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 394600 394956 . + . ID=Phyra71638;Parent=Phyra71638;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 394600 394956 . + 0 ID=Phyra71638;Parent=Phyra71638;rank=1 scaffold_32 . exon 394600 394956 . + . ID=Phyra71638.1;Parent=Phyra71638;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 395558 399931 . + . ID=Phyra78572;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000123;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 395558 399931 . + . ID=Phyra78572;Parent=Phyra78572;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 395558 399931 . + 0 ID=Phyra78572;Parent=Phyra78572;rank=1 scaffold_32 . exon 395558 399931 . + . ID=Phyra78572.1;Parent=Phyra78572;constitutive=1;rank=1 scaffold_32 . biological_region 401367 401367 0.999 - . logic_name=eponine scaffold_32 . biological_region 402442 402444 0.999 - . logic_name=eponine scaffold_32 . repeat_region 403889 403898 . ? . description=dust scaffold_32 . repeat_region 405189 405210 . ? . description=trf scaffold_32 . repeat_region 405190 405206 . ? . description=dust scaffold_32 . biological_region 406559 406559 0.999 - . logic_name=eponine scaffold_32 . biological_region 406619 406623 0.999 + . logic_name=eponine scaffold_32 . biological_region 408206 408206 0.999 + . logic_name=eponine scaffold_32 ensembl protein_coding_gene 404156 404509 . - . ID=Phyra47390;biotype=protein_coding;description=Putative elicitin protein RAM1A [Source:UniProtKB/TrEMBL%3BAcc:Q2N0A7];external_name=gwEuk.32.149.1;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 404156 404509 . - . ID=Phyra47390;Parent=Phyra47390;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 404156 404509 . - 0 ID=Phyra47390;Parent=Phyra47390;rank=1 scaffold_32 . exon 404156 404509 . - . ID=Phyra47390.1;Parent=Phyra47390;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 405256 426734 . - . ID=Phyra78574;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000125;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 405256 426734 . - . ID=Phyra78574;Parent=Phyra78574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 405256 409635 . - 0 ID=Phyra78574;Parent=Phyra78574;rank=8 scaffold_32 . exon 405256 409635 . - . ID=Phyra78574.8;Parent=Phyra78574;constitutive=1;rank=8 scaffold_32 . CDS 409867 410099 . - 0 ID=Phyra78574;Parent=Phyra78574;rank=7 scaffold_32 . CDS 410285 410364 . - 0 ID=Phyra78574;Parent=Phyra78574;rank=6 scaffold_32 . CDS 410447 410522 . - 0 ID=Phyra78574;Parent=Phyra78574;rank=5 scaffold_32 . CDS 411009 424922 . - 0 ID=Phyra78574;Parent=Phyra78574;rank=4 scaffold_32 . CDS 425013 426096 . - 0 ID=Phyra78574;Parent=Phyra78574;rank=3 scaffold_32 . CDS 426165 426383 . - 0 ID=Phyra78574;Parent=Phyra78574;rank=2 scaffold_32 . CDS 426441 426734 . - 0 ID=Phyra78574;Parent=Phyra78574;rank=1 scaffold_32 . exon 409867 410099 . - . ID=Phyra78574.7;Parent=Phyra78574;constitutive=1;ensembl_phase=1;rank=7 scaffold_32 . exon 410285 410364 . - . ID=Phyra78574.6;Parent=Phyra78574;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_32 . exon 410447 410522 . - . ID=Phyra78574.5;Parent=Phyra78574;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_32 . exon 411009 424922 . - . ID=Phyra78574.4;Parent=Phyra78574;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_32 . biological_region 425195 425197 0.999 + . logic_name=eponine scaffold_32 . biological_region 428249 428253 0.999 + . logic_name=eponine scaffold_32 ensembl protein_coding_gene 405256 426734 . - . ID=Phyra78574;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000125;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 405256 426734 . - . ID=Phyra78574;Parent=Phyra78574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 405256 409635 . - 0 ID=Phyra78574;Parent=Phyra78574;rank=8 scaffold_32 . CDS 409867 410099 . - 0 ID=Phyra78574;Parent=Phyra78574;rank=7 scaffold_32 . CDS 410285 410364 . - 0 ID=Phyra78574;Parent=Phyra78574;rank=6 scaffold_32 . CDS 410447 410522 . - 0 ID=Phyra78574;Parent=Phyra78574;rank=5 scaffold_32 . CDS 411009 424922 . - 0 ID=Phyra78574;Parent=Phyra78574;rank=4 scaffold_32 . CDS 425013 426096 . - 0 ID=Phyra78574;Parent=Phyra78574;rank=3 scaffold_32 . exon 425013 426096 . - . ID=Phyra78574.3;Parent=Phyra78574;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_32 . CDS 426165 426383 . - 0 ID=Phyra78574;Parent=Phyra78574;rank=2 scaffold_32 . exon 426165 426383 . - . ID=Phyra78574.2;Parent=Phyra78574;constitutive=1;rank=2 scaffold_32 . CDS 426441 426734 . - 0 ID=Phyra78574;Parent=Phyra78574;rank=1 scaffold_32 . exon 426441 426734 . - . ID=Phyra78574.1;Parent=Phyra78574;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 427793 428634 . - . ID=Phyra78575;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000126;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 427793 428634 . - . ID=Phyra78575;Parent=Phyra78575;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 427793 427999 . - 0 ID=Phyra78575;Parent=Phyra78575;rank=3 scaffold_32 . exon 427793 427999 . - . ID=Phyra78575.3;Parent=Phyra78575;constitutive=1;rank=3 scaffold_32 . CDS 428151 428421 . - 0 ID=Phyra78575;Parent=Phyra78575;rank=2 scaffold_32 . exon 428151 428421 . - . ID=Phyra78575.2;Parent=Phyra78575;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 428618 428634 . - 0 ID=Phyra78575;Parent=Phyra78575;rank=1 scaffold_32 . exon 428618 428634 . - . ID=Phyra78575.1;Parent=Phyra78575;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . repeat_region 436280 436329 . ? . description=dust scaffold_32 ensembl protein_coding_gene 430087 431451 . + . ID=Phyra78576;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000127;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 430087 431451 . + . ID=Phyra78576;Parent=Phyra78576;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 430087 430303 . + 0 ID=Phyra78576;Parent=Phyra78576;rank=1 scaffold_32 . exon 430087 430303 . + . ID=Phyra78576.1;Parent=Phyra78576;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 430382 431451 . + 0 ID=Phyra78576;Parent=Phyra78576;rank=2 scaffold_32 . exon 430382 431451 . + . ID=Phyra78576.2;Parent=Phyra78576;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 ensembl protein_coding_gene 431830 433216 . - . ID=Phyra78577;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000128;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 431830 433216 . - . ID=Phyra78577;Parent=Phyra78577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 431830 432613 . - 0 ID=Phyra78577;Parent=Phyra78577;rank=2 scaffold_32 . exon 431830 432613 . - . ID=Phyra78577.2;Parent=Phyra78577;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 432690 433216 . - 0 ID=Phyra78577;Parent=Phyra78577;rank=1 scaffold_32 . exon 432690 433216 . - . ID=Phyra78577.1;Parent=Phyra78577;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 ensembl protein_coding_gene 436414 438407 . + . ID=Phyra78579;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000130;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 436414 438407 . + . ID=Phyra78579;Parent=Phyra78579;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 436414 436455 . + 0 ID=Phyra78579;Parent=Phyra78579;rank=1 scaffold_32 . exon 436414 436455 . + . ID=Phyra78579.1;Parent=Phyra78579;constitutive=1;rank=1 scaffold_32 . CDS 436524 436826 . + 0 ID=Phyra78579;Parent=Phyra78579;rank=2 scaffold_32 . exon 436524 436826 . + . ID=Phyra78579.2;Parent=Phyra78579;constitutive=1;rank=2 scaffold_32 . CDS 436898 437547 . + 0 ID=Phyra78579;Parent=Phyra78579;rank=3 scaffold_32 . exon 436898 437547 . + . ID=Phyra78579.3;Parent=Phyra78579;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_32 . CDS 437620 437839 . + 0 ID=Phyra78579;Parent=Phyra78579;rank=4 scaffold_32 . exon 437620 437839 . + . ID=Phyra78579.4;Parent=Phyra78579;constitutive=1;ensembl_phase=2;rank=4 scaffold_32 . CDS 437910 438407 . + 0 ID=Phyra78579;Parent=Phyra78579;rank=5 scaffold_32 . exon 437910 438407 . + . ID=Phyra78579.5;Parent=Phyra78579;constitutive=1;rank=5 scaffold_32 ensembl protein_coding_gene 435255 436219 . - . ID=Phyra95156;biotype=protein_coding;external_name=C_scaffold_32000041;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 435255 436219 . - . ID=Phyra95156;Parent=Phyra95156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 435255 435301 . - 0 ID=Phyra95156;Parent=Phyra95156;rank=4 scaffold_32 . exon 435255 435301 . - . ID=Phyra95156.4;Parent=Phyra95156;constitutive=1;ensembl_phase=1;rank=4 scaffold_32 . CDS 435574 435715 . - 0 ID=Phyra95156;Parent=Phyra95156;rank=3 scaffold_32 . exon 435574 435715 . - . ID=Phyra95156.3;Parent=Phyra95156;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_32 . CDS 435780 435845 . - 0 ID=Phyra95156;Parent=Phyra95156;rank=2 scaffold_32 . exon 435780 435845 . - . ID=Phyra95156.2;Parent=Phyra95156;constitutive=1;rank=2 scaffold_32 . CDS 435917 436219 . - 0 ID=Phyra95156;Parent=Phyra95156;rank=1 scaffold_32 . exon 435917 436219 . - . ID=Phyra95156.1;Parent=Phyra95156;constitutive=1;rank=1 scaffold_32 . biological_region 440353 440359 0.999 + . logic_name=eponine scaffold_32 . biological_region 442083 442092 0.999 + . logic_name=eponine scaffold_32 . biological_region 442172 442175 0.999 - . logic_name=eponine scaffold_32 . biological_region 442506 442508 0.999 - . logic_name=eponine scaffold_32 . biological_region 442562 442563 0.999 + . logic_name=eponine scaffold_32 ensembl protein_coding_gene 441908 443300 . - . ID=Phyra71639;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_32000021;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 441908 443300 . - . ID=Phyra71639;Parent=Phyra71639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 441908 443144 . - 0 ID=Phyra71639;Parent=Phyra71639;rank=2 scaffold_32 . exon 441908 443144 . - . ID=Phyra71639.2;Parent=Phyra71639;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 443218 443300 . - 0 ID=Phyra71639;Parent=Phyra71639;rank=1 scaffold_32 . exon 443218 443300 . - . ID=Phyra71639.1;Parent=Phyra71639;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 ensembl protein_coding_gene 444635 446965 . - . ID=Phyra78582;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000133;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 444635 446965 . - . ID=Phyra78582;Parent=Phyra78582;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 444635 446461 . - 0 ID=Phyra78582;Parent=Phyra78582;rank=4 scaffold_32 . exon 444635 446461 . - . ID=Phyra78582.4;Parent=Phyra78582;constitutive=1;rank=4 scaffold_32 . CDS 446531 446597 . - 0 ID=Phyra78582;Parent=Phyra78582;rank=3 scaffold_32 . exon 446531 446597 . - . ID=Phyra78582.3;Parent=Phyra78582;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 446673 446779 . - 0 ID=Phyra78582;Parent=Phyra78582;rank=2 scaffold_32 . exon 446673 446779 . - . ID=Phyra78582.2;Parent=Phyra78582;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_32 . CDS 446849 446965 . - 0 ID=Phyra78582;Parent=Phyra78582;rank=1 scaffold_32 . exon 446849 446965 . - . ID=Phyra78582.1;Parent=Phyra78582;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 447906 449963 . + . ID=Phyra78583;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000134;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 447906 449963 . + . ID=Phyra78583;Parent=Phyra78583;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 447906 448362 . + 0 ID=Phyra78583;Parent=Phyra78583;rank=1 scaffold_32 . exon 447906 448362 . + . ID=Phyra78583.1;Parent=Phyra78583;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 448438 448660 . + 0 ID=Phyra78583;Parent=Phyra78583;rank=2 scaffold_32 . exon 448438 448660 . + . ID=Phyra78583.2;Parent=Phyra78583;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_32 . CDS 448725 449037 . + 0 ID=Phyra78583;Parent=Phyra78583;rank=3 scaffold_32 . exon 448725 449037 . + . ID=Phyra78583.3;Parent=Phyra78583;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 449096 449326 . + 0 ID=Phyra78583;Parent=Phyra78583;rank=4 scaffold_32 . CDS 449397 449963 . + 0 ID=Phyra78583;Parent=Phyra78583;rank=5 scaffold_32 ensembl protein_coding_gene 438985 441519 . - . ID=Phyra95158;biotype=protein_coding;external_name=C_scaffold_32000043;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 438985 441519 . - . ID=Phyra95158;Parent=Phyra95158;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 438985 439573 . - 0 ID=Phyra95158;Parent=Phyra95158;rank=4 scaffold_32 . exon 438985 439573 . - . ID=Phyra95158.4;Parent=Phyra95158;constitutive=1;ensembl_phase=2;rank=4 scaffold_32 . CDS 439910 440492 . - 0 ID=Phyra95158;Parent=Phyra95158;rank=3 scaffold_32 . exon 439910 440492 . - . ID=Phyra95158.3;Parent=Phyra95158;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_32 . CDS 440538 441071 . - 0 ID=Phyra95158;Parent=Phyra95158;rank=2 scaffold_32 . exon 440538 441071 . - . ID=Phyra95158.2;Parent=Phyra95158;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 441108 441519 . - 0 ID=Phyra95158;Parent=Phyra95158;rank=1 scaffold_32 . exon 441108 441519 . - . ID=Phyra95158.1;Parent=Phyra95158;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . repeat_region 454488 454511 . ? . description=trf scaffold_32 . repeat_region 454970 455004 . ? . description=trf scaffold_32 . repeat_region 454970 455004 . ? . description=dust scaffold_32 . repeat_region 455848 455857 . ? . description=dust scaffold_32 . repeat_region 457851 457865 . ? . description=dust scaffold_32 . exon 449096 449326 . + . ID=Phyra78583.4;Parent=Phyra78583;constitutive=1;rank=4 scaffold_32 . exon 449397 449963 . + . ID=Phyra78583.5;Parent=Phyra78583;constitutive=1;rank=5 scaffold_32 . biological_region 458720 458721 0.999 - . logic_name=eponine scaffold_32 . biological_region 460588 460591 0.999 - . logic_name=eponine scaffold_32 . biological_region 465269 465269 0.999 - . logic_name=eponine scaffold_32 . biological_region 465721 465724 0.999 + . logic_name=eponine scaffold_32 . biological_region 465758 465764 0.999 + . logic_name=eponine scaffold_32 . biological_region 465784 465787 0.999 + . logic_name=eponine scaffold_32 . biological_region 466032 466035 0.999 - . logic_name=eponine scaffold_32 . biological_region 467018 467021 0.999 - . logic_name=eponine scaffold_32 . biological_region 467231 467235 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 459679 463488 . + . ID=Phyra78584;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000135;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 459679 463488 . + . ID=Phyra78584;Parent=Phyra78584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 459679 459687 . + 0 ID=Phyra78584;Parent=Phyra78584;rank=1 scaffold_32 . exon 459679 459687 . + . ID=Phyra78584.1;Parent=Phyra78584;constitutive=1;rank=1 scaffold_32 . CDS 459766 459866 . + 0 ID=Phyra78584;Parent=Phyra78584;rank=2 scaffold_32 . exon 459766 459866 . + . ID=Phyra78584.2;Parent=Phyra78584;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_32 . CDS 459936 462132 . + 0 ID=Phyra78584;Parent=Phyra78584;rank=3 scaffold_32 . exon 459936 462132 . + . ID=Phyra78584.3;Parent=Phyra78584;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 462320 462470 . + 0 ID=Phyra78584;Parent=Phyra78584;rank=4 scaffold_32 . exon 462320 462470 . + . ID=Phyra78584.4;Parent=Phyra78584;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_32 . CDS 462682 462733 . + 0 ID=Phyra78584;Parent=Phyra78584;rank=5 scaffold_32 . exon 462682 462733 . + . ID=Phyra78584.5;Parent=Phyra78584;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_32 . CDS 462777 463004 . + 0 ID=Phyra78584;Parent=Phyra78584;rank=6 scaffold_32 . exon 462777 463004 . + . ID=Phyra78584.6;Parent=Phyra78584;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_32 . CDS 463107 463488 . + 0 ID=Phyra78584;Parent=Phyra78584;rank=7 scaffold_32 . exon 463107 463488 . + . ID=Phyra78584.7;Parent=Phyra78584;constitutive=1;ensembl_phase=2;rank=7 scaffold_32 ensembl protein_coding_gene 463715 465272 . - . ID=Phyra78585;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000136;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 463715 465272 . - . ID=Phyra78585;Parent=Phyra78585;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 463715 463826 . - 0 ID=Phyra78585;Parent=Phyra78585;rank=7 scaffold_32 . exon 463715 463826 . - . ID=Phyra78585.7;Parent=Phyra78585;constitutive=1;ensembl_phase=2;rank=7 scaffold_32 . CDS 463906 463976 . - 0 ID=Phyra78585;Parent=Phyra78585;rank=6 scaffold_32 . exon 463906 463976 . - . ID=Phyra78585.6;Parent=Phyra78585;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_32 . CDS 464040 464116 . - 0 ID=Phyra78585;Parent=Phyra78585;rank=5 scaffold_32 . exon 464040 464116 . - . ID=Phyra78585.5;Parent=Phyra78585;constitutive=1;ensembl_phase=1;rank=5 scaffold_32 . CDS 464173 464683 . - 0 ID=Phyra78585;Parent=Phyra78585;rank=4 scaffold_32 . exon 464173 464683 . - . ID=Phyra78585.4;Parent=Phyra78585;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_32 . CDS 464751 464814 . - 0 ID=Phyra78585;Parent=Phyra78585;rank=3 scaffold_32 . exon 464751 464814 . - . ID=Phyra78585.3;Parent=Phyra78585;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 464918 465006 . - 0 ID=Phyra78585;Parent=Phyra78585;rank=2 scaffold_32 . exon 464918 465006 . - . ID=Phyra78585.2;Parent=Phyra78585;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_32 . CDS 465132 465272 . - 0 ID=Phyra78585;Parent=Phyra78585;rank=1 scaffold_32 . exon 465132 465272 . - . ID=Phyra78585.1;Parent=Phyra78585;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 465693 467375 . - . ID=Phyra78586;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000137;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 465693 467375 . - . ID=Phyra78586;Parent=Phyra78586;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 465693 467375 . - 0 ID=Phyra78586;Parent=Phyra78586;rank=1 scaffold_32 . exon 465693 467375 . - . ID=Phyra78586.1;Parent=Phyra78586;constitutive=1;rank=1 scaffold_32 . repeat_region 471607 471663 . ? . description=trf scaffold_32 . repeat_region 471620 471663 . ? . description=trf scaffold_32 . repeat_region 472076 472125 . ? . description=dust scaffold_32 . repeat_region 474005 474049 . ? . description=trf scaffold_32 . repeat_region 475557 475594 . ? . description=trf scaffold_32 . repeat_region 478573 478709 . ? . description=dust scaffold_32 ensembl protein_coding_gene 478121 478477 . + . ID=Phyra47410;biotype=protein_coding;external_name=gwEuk.32.169.1;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 478121 478477 . + . ID=Phyra47410;Parent=Phyra47410;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 478121 478477 . + 0 ID=Phyra47410;Parent=Phyra47410;rank=1 scaffold_32 . exon 478121 478477 . + . ID=Phyra47410.1;Parent=Phyra47410;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 474323 477943 . + . ID=Phyra78587;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000138;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 474323 477943 . + . ID=Phyra78587;Parent=Phyra78587;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 474323 474529 . + 0 ID=Phyra78587;Parent=Phyra78587;rank=1 scaffold_32 . exon 474323 474529 . + . ID=Phyra78587.1;Parent=Phyra78587;constitutive=1;rank=1 scaffold_32 . CDS 474558 474660 . + 0 ID=Phyra78587;Parent=Phyra78587;rank=2 scaffold_32 . exon 474558 474660 . + . ID=Phyra78587.2;Parent=Phyra78587;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_32 . CDS 474848 474925 . + 0 ID=Phyra78587;Parent=Phyra78587;rank=3 scaffold_32 . exon 474848 474925 . + . ID=Phyra78587.3;Parent=Phyra78587;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 474950 475047 . + 0 ID=Phyra78587;Parent=Phyra78587;rank=4 scaffold_32 . exon 474950 475047 . + . ID=Phyra78587.4;Parent=Phyra78587;constitutive=1;ensembl_phase=1;rank=4 scaffold_32 . CDS 475149 475316 . + 0 ID=Phyra78587;Parent=Phyra78587;rank=5 scaffold_32 . exon 475149 475316 . + . ID=Phyra78587.5;Parent=Phyra78587;constitutive=1;rank=5 scaffold_32 . CDS 475527 476019 . + 0 ID=Phyra78587;Parent=Phyra78587;rank=6 scaffold_32 . exon 475527 476019 . + . ID=Phyra78587.6;Parent=Phyra78587;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_32 . CDS 476125 476445 . + 0 ID=Phyra78587;Parent=Phyra78587;rank=7 scaffold_32 . exon 476125 476445 . + . ID=Phyra78587.7;Parent=Phyra78587;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_32 . CDS 476483 476532 . + 0 ID=Phyra78587;Parent=Phyra78587;rank=8 scaffold_32 . exon 476483 476532 . + . ID=Phyra78587.8;Parent=Phyra78587;constitutive=1;ensembl_phase=1;rank=8 scaffold_32 . CDS 477236 477943 . + 0 ID=Phyra78587;Parent=Phyra78587;rank=9 scaffold_32 . exon 477236 477943 . + . ID=Phyra78587.9;Parent=Phyra78587;constitutive=1;rank=9 scaffold_32 . biological_region 487165 487169 0.999 + . logic_name=eponine scaffold_32 . biological_region 487589 487590 0.999 - . logic_name=eponine scaffold_32 ensembl pseudogene 478735 479089 . + . ID=Phyra47411;biotype=pseudogene;external_name=gwEuk.32.170.1;logic_name=jgi_phyra1 scaffold_32 ensembl pseudogene 478735 479089 . + . ID=Phyra47411;Parent=Phyra47411;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_32 . exon 478735 479089 . + . ID=Phyra47411.1;Parent=Phyra47411;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 ensembl protein_coding_gene 480092 481649 . + . ID=Phyra78588;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000139;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 480092 481649 . + . ID=Phyra78588;Parent=Phyra78588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 480092 480230 . + 0 ID=Phyra78588;Parent=Phyra78588;rank=1 scaffold_32 . exon 480092 480230 . + . ID=Phyra78588.1;Parent=Phyra78588;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 480345 480682 . + 0 ID=Phyra78588;Parent=Phyra78588;rank=2 scaffold_32 . exon 480345 480682 . + . ID=Phyra78588.2;Parent=Phyra78588;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 480942 481649 . + 0 ID=Phyra78588;Parent=Phyra78588;rank=3 scaffold_32 . exon 480942 481649 . + . ID=Phyra78588.3;Parent=Phyra78588;constitutive=1;rank=3 scaffold_32 ensembl protein_coding_gene 484565 485606 . + . ID=Phyra78589;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000140;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 484565 485606 . + . ID=Phyra78589;Parent=Phyra78589;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 484565 484585 . + 0 ID=Phyra78589;Parent=Phyra78589;rank=1 scaffold_32 . exon 484565 484585 . + . ID=Phyra78589.1;Parent=Phyra78589;constitutive=1;rank=1 scaffold_32 . CDS 484733 485103 . + 0 ID=Phyra78589;Parent=Phyra78589;rank=2 scaffold_32 . exon 484733 485103 . + . ID=Phyra78589.2;Parent=Phyra78589;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_32 . CDS 485166 485186 . + 0 ID=Phyra78589;Parent=Phyra78589;rank=3 scaffold_32 . exon 485166 485186 . + . ID=Phyra78589.3;Parent=Phyra78589;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_32 . CDS 485252 485606 . + 0 ID=Phyra78589;Parent=Phyra78589;rank=4 scaffold_32 . exon 485252 485606 . + . ID=Phyra78589.4;Parent=Phyra78589;constitutive=1;ensembl_phase=2;rank=4 scaffold_32 . repeat_region 489318 489367 . ? . description=dust scaffold_32 . repeat_region 490020 490027 . ? . description=dust scaffold_32 . repeat_region 490639 490647 . ? . description=dust scaffold_32 . repeat_region 490672 490679 . ? . description=dust scaffold_32 . repeat_region 491905 491954 . ? . description=dust scaffold_32 . repeat_region 496554 497378 . ? . description=dust scaffold_32 . repeat_region 497938 497947 . ? . description=dust scaffold_32 ensembl snRNA_gene 489625 489740 . + . ID=EPrPRAG00000000001;biotype=snRNA;description=U5 spliceosomal RNA [Source:RFAM%3BAcc:RF00020];external_name=U5;logic_name=ncrna_eg scaffold_32 ensembl snRNA 489625 489740 . + . ID=EPrPRAT00000000001;Parent=EPrPRAG00000000001;biotype=snRNA;logic_name=ncrna_eg scaffold_32 . exon 489625 489740 . + . ID=EPrPRAE00000000001;Parent=EPrPRAT00000000001;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 ensembl protein_coding_gene 495417 496452 . + . ID=Phyra78590;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_32000141;logic_name=jgi_phyra1 scaffold_32 ensembl transcript 495417 496452 . + . ID=Phyra78590;Parent=Phyra78590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_32 . CDS 495417 495761 . + 0 ID=Phyra78590;Parent=Phyra78590;rank=1 scaffold_32 . exon 495417 495761 . + . ID=Phyra78590.1;Parent=Phyra78590;constitutive=1;rank=1 scaffold_32 . CDS 495835 496452 . + 0 ID=Phyra78590;Parent=Phyra78590;rank=2 scaffold_32 . exon 495835 496452 . + . ID=Phyra78590.2;Parent=Phyra78590;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_31 1 507260 scaffold_31 . biological_region 570 576 0.999 + . logic_name=eponine scaffold_31 . biological_region 651 654 0.999 - . logic_name=eponine scaffold_31 . biological_region 687 689 0.999 - . logic_name=eponine scaffold_31 . biological_region 3301 3303 0.999 - . logic_name=eponine scaffold_31 . biological_region 3826 3832 0.999 + . logic_name=eponine scaffold_31 . biological_region 4012 4014 0.999 - . logic_name=eponine scaffold_31 . biological_region 7137 7138 0.999 - . logic_name=eponine scaffold_31 ensembl protein_coding_gene 3776 7876 . + . ID=Phyra71606;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_31000001;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 3776 7876 . + . ID=Phyra71606;Parent=Phyra71606;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 3776 7876 . + 0 ID=Phyra71606;Parent=Phyra71606;rank=1 scaffold_31 . exon 3776 7876 . + . ID=Phyra71606.1;Parent=Phyra71606;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 480 2171 . + . ID=Phyra78330;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000001;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 480 2171 . + . ID=Phyra78330;Parent=Phyra78330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 480 2171 . + 0 ID=Phyra78330;Parent=Phyra78330;rank=1 scaffold_31 . exon 480 2171 . + . ID=Phyra78330.1;Parent=Phyra78330;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 2315 3277 . - . ID=Phyra78331;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000002;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 2315 3277 . - . ID=Phyra78331;Parent=Phyra78331;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 2315 3277 . - 0 ID=Phyra78331;Parent=Phyra78331;rank=1 scaffold_31 . exon 2315 3277 . - . ID=Phyra78331.1;Parent=Phyra78331;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 8156 10500 . + . ID=Phyra78333;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000004;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 8156 10500 . + . ID=Phyra78333;Parent=Phyra78333;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 8156 8516 . + 0 ID=Phyra78333;Parent=Phyra78333;rank=1 scaffold_31 . exon 8156 8516 . + . ID=Phyra78333.1;Parent=Phyra78333;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 8597 10500 . + 0 ID=Phyra78333;Parent=Phyra78333;rank=2 scaffold_31 . exon 8597 10500 . + . ID=Phyra78333.2;Parent=Phyra78333;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . repeat_region 11099 11111 . ? . description=dust scaffold_31 . repeat_region 11712 11720 . ? . description=dust scaffold_31 . repeat_region 11937 11946 . ? . description=dust scaffold_31 ensembl protein_coding_gene 11269 11634 . + . ID=Phyra71607;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_31000002;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 11269 11634 . + . ID=Phyra71607;Parent=Phyra71607;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 11269 11634 . + 0 ID=Phyra71607;Parent=Phyra71607;rank=1 scaffold_31 . exon 11269 11634 . + . ID=Phyra71607.1;Parent=Phyra71607;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 12011 13954 . + . ID=Phyra78335;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000006;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 12011 13954 . + . ID=Phyra78335;Parent=Phyra78335;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 12011 13954 . + 0 ID=Phyra78335;Parent=Phyra78335;rank=1 scaffold_31 . exon 12011 13954 . + . ID=Phyra78335.1;Parent=Phyra78335;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 15952 16731 . - . ID=Phyra78336;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000007;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 15952 16731 . - . ID=Phyra78336;Parent=Phyra78336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 15952 16731 . - 0 ID=Phyra78336;Parent=Phyra78336;rank=1 scaffold_31 . exon 15952 16731 . - . ID=Phyra78336.1;Parent=Phyra78336;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 17950 18726 . - . ID=Phyra78337;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000008;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 17950 18726 . - . ID=Phyra78337;Parent=Phyra78337;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 17950 18726 . - 0 ID=Phyra78337;Parent=Phyra78337;rank=1 scaffold_31 . exon 17950 18726 . - . ID=Phyra78337.1;Parent=Phyra78337;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 19555 20421 . - . ID=Phyra78338;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000009;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 19555 20421 . - . ID=Phyra78338;Parent=Phyra78338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 19555 20421 . - 0 ID=Phyra78338;Parent=Phyra78338;rank=1 scaffold_31 . exon 19555 20421 . - . ID=Phyra78338.1;Parent=Phyra78338;constitutive=1;rank=1 scaffold_31 . biological_region 20162 20162 0.999 - . logic_name=eponine scaffold_31 . biological_region 20536 20539 0.999 + . logic_name=eponine scaffold_31 . biological_region 20545 20550 0.999 + . logic_name=eponine scaffold_31 . repeat_region 22221 22252 . ? . description=trf scaffold_31 . biological_region 23194 23196 0.999 + . logic_name=eponine scaffold_31 . repeat_region 23733 23834 . + . description=(CAG)n scaffold_31 . biological_region 23918 23921 0.999 - . logic_name=eponine scaffold_31 . biological_region 23971 23980 0.999 + . logic_name=eponine scaffold_31 . biological_region 24074 24076 0.999 - . logic_name=eponine scaffold_31 . biological_region 24102 24102 0.999 + . logic_name=eponine scaffold_31 . biological_region 24130 24133 0.999 + . logic_name=eponine scaffold_31 . biological_region 24157 24161 0.999 + . logic_name=eponine scaffold_31 ensembl protein_coding_gene 23452 24345 . + . ID=Phyra78339;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000010;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 23452 24345 . + . ID=Phyra78339;Parent=Phyra78339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 23452 24345 . + 0 ID=Phyra78339;Parent=Phyra78339;rank=1 scaffold_31 . exon 23452 24345 . + . ID=Phyra78339.1;Parent=Phyra78339;constitutive=1;rank=1 scaffold_31 . repeat_region 25188 31807 . ? . description=dust scaffold_31 . repeat_region 36133 36254 . ? . description=dust scaffold_31 . repeat_region 38597 38604 . ? . description=dust scaffold_31 . repeat_region 39473 39496 . ? . description=dust scaffold_31 ensembl protein_coding_gene 33200 34066 . + . ID=Phyra78340;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000011;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 33200 34066 . + . ID=Phyra78340;Parent=Phyra78340;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 33200 34066 . + 0 ID=Phyra78340;Parent=Phyra78340;rank=1 scaffold_31 . exon 33200 34066 . + . ID=Phyra78340.1;Parent=Phyra78340;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 34896 35633 . + . ID=Phyra78341;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000012;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 34896 35633 . + . ID=Phyra78341;Parent=Phyra78341;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 34896 35633 . + 0 ID=Phyra78341;Parent=Phyra78341;rank=1 scaffold_31 . exon 34896 35633 . + . ID=Phyra78341.1;Parent=Phyra78341;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 37463 38350 . - . ID=Phyra78342;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000013;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 37463 38350 . - . ID=Phyra78342;Parent=Phyra78342;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 37463 38350 . - 0 ID=Phyra78342;Parent=Phyra78342;rank=1 scaffold_31 . exon 37463 38350 . - . ID=Phyra78342.1;Parent=Phyra78342;constitutive=1;rank=1 scaffold_31 . repeat_region 41951 41971 . ? . description=trf scaffold_31 . repeat_region 54986 55002 . ? . description=dust scaffold_31 . biological_region 57395 57399 0.999 - . logic_name=eponine scaffold_31 . biological_region 57415 57418 0.999 + . logic_name=eponine scaffold_31 . biological_region 57495 57498 0.999 - . logic_name=eponine scaffold_31 . biological_region 57546 57550 0.999 + . logic_name=eponine scaffold_31 . biological_region 57629 57630 0.999 + . logic_name=eponine scaffold_31 . biological_region 57647 57648 0.999 - . logic_name=eponine scaffold_31 . biological_region 57688 57689 0.999 - . logic_name=eponine scaffold_31 . biological_region 58356 58361 0.999 - . logic_name=eponine scaffold_31 . biological_region 58415 58416 0.999 + . logic_name=eponine scaffold_31 ensembl protein_coding_gene 55332 56828 . - . ID=Phyra78343;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000014;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 55332 56828 . - . ID=Phyra78343;Parent=Phyra78343;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 55332 56828 . - 0 ID=Phyra78343;Parent=Phyra78343;rank=1 scaffold_31 . exon 55332 56828 . - . ID=Phyra78343.1;Parent=Phyra78343;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 60478 71193 . + . ID=Phyra47181;biotype=protein_coding;external_name=gwEuk.31.94.1;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 60478 71193 . + . ID=Phyra47181;Parent=Phyra47181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 60478 64687 . + 0 ID=Phyra47181;Parent=Phyra47181;rank=1 scaffold_31 . exon 60478 64687 . + . ID=Phyra47181.1;Parent=Phyra47181;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 64784 71193 . + 0 ID=Phyra47181;Parent=Phyra47181;rank=2 scaffold_31 . exon 64784 71193 . + . ID=Phyra47181.2;Parent=Phyra47181;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . biological_region 72283 72284 0.999 - . logic_name=eponine scaffold_31 . biological_region 72512 72513 0.999 - . logic_name=eponine scaffold_31 . biological_region 75229 75229 0.999 - . logic_name=eponine scaffold_31 . biological_region 75248 75251 0.999 - . logic_name=eponine scaffold_31 . biological_region 76035 76040 0.999 - . logic_name=eponine scaffold_31 . biological_region 78743 78747 0.999 + . logic_name=eponine scaffold_31 . biological_region 78824 78827 0.999 + . logic_name=eponine scaffold_31 . biological_region 78870 78870 0.999 - . logic_name=eponine scaffold_31 ensembl protein_coding_gene 71329 73356 . + . ID=Phyra78346;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000017;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 71329 73356 . + . ID=Phyra78346;Parent=Phyra78346;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 71329 71721 . + 0 ID=Phyra78346;Parent=Phyra78346;rank=1 scaffold_31 . exon 71329 71721 . + . ID=Phyra78346.1;Parent=Phyra78346;constitutive=1;rank=1 scaffold_31 . CDS 71791 73356 . + 0 ID=Phyra78346;Parent=Phyra78346;rank=2 scaffold_31 . exon 71791 73356 . + . ID=Phyra78346.2;Parent=Phyra78346;constitutive=1;rank=2 scaffold_31 ensembl protein_coding_gene 76967 77941 . + . ID=Phyra78347;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000018;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 76967 77941 . + . ID=Phyra78347;Parent=Phyra78347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 76967 77941 . + 0 ID=Phyra78347;Parent=Phyra78347;rank=1 scaffold_31 . exon 76967 77941 . + . ID=Phyra78347.1;Parent=Phyra78347;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 78525 79265 . - . ID=Phyra78348;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000019;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 78525 79265 . - . ID=Phyra78348;Parent=Phyra78348;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 78525 79265 . - 0 ID=Phyra78348;Parent=Phyra78348;rank=1 scaffold_31 . exon 78525 79265 . - . ID=Phyra78348.1;Parent=Phyra78348;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 79486 83061 . + . ID=Phyra78349;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000020;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 79486 83061 . + . ID=Phyra78349;Parent=Phyra78349;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 79486 79773 . + 0 ID=Phyra78349;Parent=Phyra78349;rank=1 scaffold_31 . exon 79486 79773 . + . ID=Phyra78349.1;Parent=Phyra78349;constitutive=1;rank=1 scaffold_31 . CDS 79857 80006 . + 0 ID=Phyra78349;Parent=Phyra78349;rank=2 scaffold_31 . CDS 80069 80460 . + 0 ID=Phyra78349;Parent=Phyra78349;rank=3 scaffold_31 . CDS 80518 82407 . + 0 ID=Phyra78349;Parent=Phyra78349;rank=4 scaffold_31 . CDS 82500 83061 . + 0 ID=Phyra78349;Parent=Phyra78349;rank=5 scaffold_31 . repeat_region 82423 82433 . ? . description=dust scaffold_31 . repeat_region 84274 84318 . ? . description=trf scaffold_31 . repeat_region 88190 88434 . ? . description=dust scaffold_31 . repeat_region 88585 88597 . ? . description=dust scaffold_31 . repeat_region 88648 88718 . ? . description=trf scaffold_31 . repeat_region 88750 88794 . ? . description=trf scaffold_31 . exon 79857 80006 . + . ID=Phyra78349.2;Parent=Phyra78349;constitutive=1;rank=2 scaffold_31 . exon 80069 80460 . + . ID=Phyra78349.3;Parent=Phyra78349;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_31 . exon 80518 82407 . + . ID=Phyra78349.4;Parent=Phyra78349;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_31 . exon 82500 83061 . + . ID=Phyra78349.5;Parent=Phyra78349;constitutive=1;ensembl_phase=2;rank=5 scaffold_31 ensembl protein_coding_gene 84558 88130 . - . ID=Phyra78350;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000021;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 84558 88130 . - . ID=Phyra78350;Parent=Phyra78350;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 84558 88130 . - 0 ID=Phyra78350;Parent=Phyra78350;rank=1 scaffold_31 . exon 84558 88130 . - . ID=Phyra78350.1;Parent=Phyra78350;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 89615 90172 . + . ID=Phyra78351;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000022;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 89615 90172 . + . ID=Phyra78351;Parent=Phyra78351;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 89615 90172 . + 0 ID=Phyra78351;Parent=Phyra78351;rank=1 scaffold_31 . exon 89615 90172 . + . ID=Phyra78351.1;Parent=Phyra78351;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 90653 91765 . + . ID=Phyra78352;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000023;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 90653 91765 . + . ID=Phyra78352;Parent=Phyra78352;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 90653 91765 . + 0 ID=Phyra78352;Parent=Phyra78352;rank=1 scaffold_31 . exon 90653 91765 . + . ID=Phyra78352.1;Parent=Phyra78352;constitutive=1;rank=1 scaffold_31 . repeat_region 101940 102130 . + . description=Polinton-1_PI scaffold_31 . repeat_region 102799 102807 . ? . description=dust scaffold_31 . repeat_region 102944 102954 . ? . description=dust scaffold_31 . repeat_region 103097 103106 . ? . description=dust scaffold_31 . repeat_region 103165 103172 . ? . description=dust scaffold_31 . repeat_region 103919 103926 . ? . description=dust scaffold_31 . repeat_region 105422 105478 . ? . description=dust scaffold_31 . repeat_region 108833 108840 . ? . description=dust scaffold_31 ensembl protein_coding_gene 100085 100862 . + . ID=Phyra78353;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000024;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 100085 100862 . + . ID=Phyra78353;Parent=Phyra78353;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 100085 100550 . + 0 ID=Phyra78353;Parent=Phyra78353;rank=1 scaffold_31 . exon 100085 100550 . + . ID=Phyra78353.1;Parent=Phyra78353;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 100720 100862 . + 0 ID=Phyra78353;Parent=Phyra78353;rank=2 scaffold_31 . exon 100720 100862 . + . ID=Phyra78353.2;Parent=Phyra78353;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 ensembl protein_coding_gene 106371 107785 . + . ID=Phyra78354;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000025;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 106371 107785 . + . ID=Phyra78354;Parent=Phyra78354;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 106371 106401 . + 0 ID=Phyra78354;Parent=Phyra78354;rank=1 scaffold_31 . exon 106371 106401 . + . ID=Phyra78354.1;Parent=Phyra78354;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 106728 107055 . + 0 ID=Phyra78354;Parent=Phyra78354;rank=2 scaffold_31 . exon 106728 107055 . + . ID=Phyra78354.2;Parent=Phyra78354;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_31 . CDS 107122 107785 . + 0 ID=Phyra78354;Parent=Phyra78354;rank=3 scaffold_31 . exon 107122 107785 . + . ID=Phyra78354.3;Parent=Phyra78354;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 . biological_region 112854 112858 0.999 - . logic_name=eponine scaffold_31 . biological_region 112875 112877 0.999 + . logic_name=eponine scaffold_31 ensembl protein_coding_gene 119092 121204 . - . ID=Phyra47186;biotype=protein_coding;external_name=gwEuk.31.99.1;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 119092 121204 . - . ID=Phyra47186;Parent=Phyra47186;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 119092 119266 . - 0 ID=Phyra47186;Parent=Phyra47186;rank=4 scaffold_31 . exon 119092 119266 . - . ID=Phyra47186.4;Parent=Phyra47186;constitutive=1;ensembl_phase=2;rank=4 scaffold_31 . CDS 119340 120234 . - 0 ID=Phyra47186;Parent=Phyra47186;rank=3 scaffold_31 . exon 119340 120234 . - . ID=Phyra47186.3;Parent=Phyra47186;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_31 . CDS 120382 120772 . - 0 ID=Phyra47186;Parent=Phyra47186;rank=2 scaffold_31 . CDS 120821 121204 . - 0 ID=Phyra47186;Parent=Phyra47186;rank=1 scaffold_31 ensembl protein_coding_gene 114130 114930 . - . ID=Phyra78355;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000026;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 114130 114930 . - . ID=Phyra78355;Parent=Phyra78355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 114130 114930 . - 0 ID=Phyra78355;Parent=Phyra78355;rank=1 scaffold_31 . exon 114130 114930 . - . ID=Phyra78355.1;Parent=Phyra78355;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 115201 116892 . + . ID=Phyra95094;biotype=protein_coding;external_name=C_scaffold_31000001;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 115201 116892 . + . ID=Phyra95094;Parent=Phyra95094;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 115201 115702 . + 0 ID=Phyra95094;Parent=Phyra95094;rank=1 scaffold_31 . exon 115201 115702 . + . ID=Phyra95094.1;Parent=Phyra95094;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 116459 116892 . + 0 ID=Phyra95094;Parent=Phyra95094;rank=2 scaffold_31 . exon 116459 116892 . + . ID=Phyra95094.2;Parent=Phyra95094;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 ensembl protein_coding_gene 116997 118264 . - . ID=Phyra95095;biotype=protein_coding;external_name=C_scaffold_31000002;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 116997 118264 . - . ID=Phyra95095;Parent=Phyra95095;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 116997 117074 . - 0 ID=Phyra95095;Parent=Phyra95095;rank=4 scaffold_31 . exon 116997 117074 . - . ID=Phyra95095.4;Parent=Phyra95095;constitutive=1;rank=4 scaffold_31 . CDS 117261 117340 . - 0 ID=Phyra95095;Parent=Phyra95095;rank=3 scaffold_31 . exon 117261 117340 . - . ID=Phyra95095.3;Parent=Phyra95095;constitutive=1;ensembl_phase=1;rank=3 scaffold_31 . CDS 117386 117890 . - 0 ID=Phyra95095;Parent=Phyra95095;rank=2 scaffold_31 . exon 117386 117890 . - . ID=Phyra95095.2;Parent=Phyra95095;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_31 . CDS 118028 118264 . - 0 ID=Phyra95095;Parent=Phyra95095;rank=1 scaffold_31 . exon 118028 118264 . - . ID=Phyra95095.1;Parent=Phyra95095;constitutive=1;rank=1 scaffold_31 . repeat_region 120628 120691 . ? . description=dust scaffold_31 . repeat_region 120905 120943 . ? . description=trf scaffold_31 . exon 120382 120772 . - . ID=Phyra47186.2;Parent=Phyra47186;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_31 . exon 120821 121204 . - . ID=Phyra47186.1;Parent=Phyra47186;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 122495 124537 . + . ID=Phyra78358;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000029;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 122495 124537 . + . ID=Phyra78358;Parent=Phyra78358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 122495 124537 . + 0 ID=Phyra78358;Parent=Phyra78358;rank=1 scaffold_31 . exon 122495 124537 . + . ID=Phyra78358.1;Parent=Phyra78358;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 126644 127102 . - . ID=Phyra78359;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000030;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 126644 127102 . - . ID=Phyra78359;Parent=Phyra78359;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 126644 127102 . - 0 ID=Phyra78359;Parent=Phyra78359;rank=1 scaffold_31 . exon 126644 127102 . - . ID=Phyra78359.1;Parent=Phyra78359;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 128862 130233 . - . ID=Phyra78360;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000031;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 128862 130233 . - . ID=Phyra78360;Parent=Phyra78360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 128862 128900 . - 0 ID=Phyra78360;Parent=Phyra78360;rank=2 scaffold_31 . exon 128862 128900 . - . ID=Phyra78360.2;Parent=Phyra78360;constitutive=1;rank=2 scaffold_31 . CDS 129148 130233 . - 0 ID=Phyra78360;Parent=Phyra78360;rank=1 scaffold_31 . exon 129148 130233 . - . ID=Phyra78360.1;Parent=Phyra78360;constitutive=1;rank=1 scaffold_31 . repeat_region 135516 139369 . ? . description=dust scaffold_31 . biological_region 139603 139604 0.999 + . logic_name=eponine scaffold_31 . biological_region 139612 139613 0.999 - . logic_name=eponine scaffold_31 . biological_region 139687 139690 0.999 - . logic_name=eponine scaffold_31 . biological_region 140007 140011 0.999 - . logic_name=eponine scaffold_31 . biological_region 140390 140392 0.999 + . logic_name=eponine scaffold_31 . biological_region 140609 140612 0.999 + . logic_name=eponine scaffold_31 . biological_region 142600 142600 0.999 - . logic_name=eponine scaffold_31 . repeat_region 144884 144915 . ? . description=trf scaffold_31 . biological_region 147967 147969 0.999 + . logic_name=eponine scaffold_31 . biological_region 148001 148004 0.999 + . logic_name=eponine scaffold_31 . biological_region 148641 148645 0.999 + . logic_name=eponine scaffold_31 . repeat_region 148734 148783 . ? . description=trf scaffold_31 . biological_region 148764 148764 0.999 - . logic_name=eponine scaffold_31 . biological_region 148791 148792 0.999 - . logic_name=eponine scaffold_31 . biological_region 148817 148818 0.999 + . logic_name=eponine scaffold_31 . biological_region 148821 148826 0.999 - . logic_name=eponine scaffold_31 ensembl protein_coding_gene 140198 140925 . - . ID=Phyra78361;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000032;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 140198 140925 . - . ID=Phyra78361;Parent=Phyra78361;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 140198 140241 . - 0 ID=Phyra78361;Parent=Phyra78361;rank=2 scaffold_31 . exon 140198 140241 . - . ID=Phyra78361.2;Parent=Phyra78361;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 140283 140925 . - 0 ID=Phyra78361;Parent=Phyra78361;rank=1 scaffold_31 . exon 140283 140925 . - . ID=Phyra78361.1;Parent=Phyra78361;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 ensembl protein_coding_gene 141899 143412 . - . ID=Phyra78362;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000033;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 141899 143412 . - . ID=Phyra78362;Parent=Phyra78362;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 141899 141907 . - 0 ID=Phyra78362;Parent=Phyra78362;rank=2 scaffold_31 . exon 141899 141907 . - . ID=Phyra78362.2;Parent=Phyra78362;constitutive=1;rank=2 scaffold_31 . CDS 142273 143412 . - 0 ID=Phyra78362;Parent=Phyra78362;rank=1 scaffold_31 . exon 142273 143412 . - . ID=Phyra78362.1;Parent=Phyra78362;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 144348 148083 . + . ID=Phyra78363;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000034;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 144348 148083 . + . ID=Phyra78363;Parent=Phyra78363;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 144348 144412 . + 0 ID=Phyra78363;Parent=Phyra78363;rank=1 scaffold_31 . exon 144348 144412 . + . ID=Phyra78363.1;Parent=Phyra78363;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . CDS 144481 145258 . + 0 ID=Phyra78363;Parent=Phyra78363;rank=2 scaffold_31 . exon 144481 145258 . + . ID=Phyra78363.2;Parent=Phyra78363;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 145349 146710 . + 0 ID=Phyra78363;Parent=Phyra78363;rank=3 scaffold_31 . exon 145349 146710 . + . ID=Phyra78363.3;Parent=Phyra78363;constitutive=1;rank=3 scaffold_31 . CDS 146779 148083 . + 0 ID=Phyra78363;Parent=Phyra78363;rank=4 scaffold_31 . exon 146779 148083 . + . ID=Phyra78363.4;Parent=Phyra78363;constitutive=1;rank=4 scaffold_31 ensembl protein_coding_gene 148241 148884 . - . ID=Phyra78364;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000035;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 148241 148884 . - . ID=Phyra78364;Parent=Phyra78364;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 148241 148478 . - 0 ID=Phyra78364;Parent=Phyra78364;rank=4 scaffold_31 . exon 148241 148478 . - . ID=Phyra78364.4;Parent=Phyra78364;constitutive=1;ensembl_phase=2;rank=4 scaffold_31 . CDS 148537 148554 . - 0 ID=Phyra78364;Parent=Phyra78364;rank=3 scaffold_31 . exon 148537 148554 . - . ID=Phyra78364.3;Parent=Phyra78364;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_31 . CDS 148656 148714 . - 0 ID=Phyra78364;Parent=Phyra78364;rank=2 scaffold_31 . exon 148656 148714 . - . ID=Phyra78364.2;Parent=Phyra78364;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_31 . CDS 148810 148884 . - 0 ID=Phyra78364;Parent=Phyra78364;rank=1 scaffold_31 . exon 148810 148884 . - . ID=Phyra78364.1;Parent=Phyra78364;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 153238 155687 . + . ID=Phyra78365;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000036;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 153238 155687 . + . ID=Phyra78365;Parent=Phyra78365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 153238 153481 . + 0 ID=Phyra78365;Parent=Phyra78365;rank=1 scaffold_31 . exon 153238 153481 . + . ID=Phyra78365.1;Parent=Phyra78365;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 153511 153659 . + 0 ID=Phyra78365;Parent=Phyra78365;rank=2 scaffold_31 . exon 153511 153659 . + . ID=Phyra78365.2;Parent=Phyra78365;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 153923 153930 . + 0 ID=Phyra78365;Parent=Phyra78365;rank=3 scaffold_31 . exon 153923 153930 . + . ID=Phyra78365.3;Parent=Phyra78365;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_31 . CDS 154086 155090 . + 0 ID=Phyra78365;Parent=Phyra78365;rank=4 scaffold_31 . exon 154086 155090 . + . ID=Phyra78365.4;Parent=Phyra78365;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_31 . CDS 155130 155283 . + 0 ID=Phyra78365;Parent=Phyra78365;rank=5 scaffold_31 . exon 155130 155283 . + . ID=Phyra78365.5;Parent=Phyra78365;constitutive=1;ensembl_phase=2;rank=5 scaffold_31 . CDS 155316 155687 . + 0 ID=Phyra78365;Parent=Phyra78365;rank=6 scaffold_31 . exon 155316 155687 . + . ID=Phyra78365.6;Parent=Phyra78365;constitutive=1;rank=6 scaffold_31 . repeat_region 159258 159267 . ? . description=dust scaffold_31 . biological_region 161349 161355 0.999 + . logic_name=eponine scaffold_31 . repeat_region 162077 162120 . ? . description=trf scaffold_31 . biological_region 162849 162851 0.999 + . logic_name=eponine scaffold_31 . biological_region 164163 164165 0.999 + . logic_name=eponine scaffold_31 . repeat_region 165533 165553 . ? . description=dust scaffold_31 ensembl protein_coding_gene 161266 161952 . + . ID=Phyra78366;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000037;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 161266 161952 . + . ID=Phyra78366;Parent=Phyra78366;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 161266 161952 . + 0 ID=Phyra78366;Parent=Phyra78366;rank=1 scaffold_31 . exon 161266 161952 . + . ID=Phyra78366.1;Parent=Phyra78366;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 162008 164398 . - . ID=Phyra78367;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000038;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 162008 164398 . - . ID=Phyra78367;Parent=Phyra78367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 162008 164398 . - 0 ID=Phyra78367;Parent=Phyra78367;rank=1 scaffold_31 . exon 162008 164398 . - . ID=Phyra78367.1;Parent=Phyra78367;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 166645 168774 . - . ID=Phyra78368;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000039;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 166645 168774 . - . ID=Phyra78368;Parent=Phyra78368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 166645 167026 . - 0 ID=Phyra78368;Parent=Phyra78368;rank=3 scaffold_31 . exon 166645 167026 . - . ID=Phyra78368.3;Parent=Phyra78368;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 . CDS 167095 168434 . - 0 ID=Phyra78368;Parent=Phyra78368;rank=2 scaffold_31 . exon 167095 168434 . - . ID=Phyra78368.2;Parent=Phyra78368;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_31 . CDS 168508 168774 . - 0 ID=Phyra78368;Parent=Phyra78368;rank=1 scaffold_31 . exon 168508 168774 . - . ID=Phyra78368.1;Parent=Phyra78368;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 169455 170487 . + . ID=Phyra78369;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000040;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 169455 170487 . + . ID=Phyra78369;Parent=Phyra78369;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 169455 169593 . + 0 ID=Phyra78369;Parent=Phyra78369;rank=1 scaffold_31 . exon 169455 169593 . + . ID=Phyra78369.1;Parent=Phyra78369;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 169658 170487 . + 0 ID=Phyra78369;Parent=Phyra78369;rank=2 scaffold_31 . exon 169658 170487 . + . ID=Phyra78369.2;Parent=Phyra78369;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 ensembl protein_coding_gene 170687 172468 . - . ID=Phyra78370;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000041;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 170687 172468 . - . ID=Phyra78370;Parent=Phyra78370;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 170687 172468 . - 0 ID=Phyra78370;Parent=Phyra78370;rank=1 scaffold_31 . exon 170687 172468 . - . ID=Phyra78370.1;Parent=Phyra78370;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 175353 176849 . - . ID=Phyra78371;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000042;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 175353 176849 . - . ID=Phyra78371;Parent=Phyra78371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 175353 176849 . - 0 ID=Phyra78371;Parent=Phyra78371;rank=1 scaffold_31 . exon 175353 176849 . - . ID=Phyra78371.1;Parent=Phyra78371;constitutive=1;rank=1 scaffold_31 . repeat_region 181312 181363 . ? . description=trf scaffold_31 . repeat_region 187846 187867 . ? . description=trf scaffold_31 ensembl protein_coding_gene 184339 185499 . + . ID=Phyra47199;biotype=protein_coding;external_name=gwEuk.31.112.1;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 184339 185499 . + . ID=Phyra47199;Parent=Phyra47199;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 184339 185499 . + 0 ID=Phyra47199;Parent=Phyra47199;rank=1 scaffold_31 . exon 184339 185499 . + . ID=Phyra47199.1;Parent=Phyra47199;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 186105 187628 . - . ID=Phyra78373;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000044;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 186105 187628 . - . ID=Phyra78373;Parent=Phyra78373;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 186105 187628 . - 0 ID=Phyra78373;Parent=Phyra78373;rank=1 scaffold_31 . exon 186105 187628 . - . ID=Phyra78373.1;Parent=Phyra78373;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 188693 190132 . - . ID=Phyra78374;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000045;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 188693 190132 . - . ID=Phyra78374;Parent=Phyra78374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 188693 190132 . - 0 ID=Phyra78374;Parent=Phyra78374;rank=1 scaffold_31 . exon 188693 190132 . - . ID=Phyra78374.1;Parent=Phyra78374;constitutive=1;rank=1 scaffold_31 . biological_region 189396 189397 0.999 - . logic_name=eponine scaffold_31 . biological_region 192581 192581 0.999 + . logic_name=eponine scaffold_31 . biological_region 192756 192761 0.999 - . logic_name=eponine scaffold_31 . biological_region 192764 192767 0.999 + . logic_name=eponine scaffold_31 . biological_region 192798 192801 0.999 - . logic_name=eponine scaffold_31 . biological_region 192854 192857 0.999 + . logic_name=eponine scaffold_31 ensembl protein_coding_gene 191091 192185 . + . ID=Phyra47215;biotype=protein_coding;external_name=gwEuk.31.128.1;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 191091 192185 . + . ID=Phyra47215;Parent=Phyra47215;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 191091 192185 . + 0 ID=Phyra47215;Parent=Phyra47215;rank=1 scaffold_31 . exon 191091 192185 . + . ID=Phyra47215.1;Parent=Phyra47215;constitutive=1;rank=1 scaffold_31 . repeat_region 200844 200851 . ? . description=dust scaffold_31 ensembl protein_coding_gene 203629 204453 . + . ID=Phyra71609;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_31000004;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 203629 204453 . + . ID=Phyra71609;Parent=Phyra71609;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 203629 204453 . + 0 ID=Phyra71609;Parent=Phyra71609;rank=1 scaffold_31 . exon 203629 204453 . + . ID=Phyra71609.1;Parent=Phyra71609;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 200906 201715 . + . ID=Phyra78376;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000047;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 200906 201715 . + . ID=Phyra78376;Parent=Phyra78376;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 200906 201715 . + 0 ID=Phyra78376;Parent=Phyra78376;rank=1 scaffold_31 . exon 200906 201715 . + . ID=Phyra78376.1;Parent=Phyra78376;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 201982 203414 . - . ID=Phyra78377;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000048;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 201982 203414 . - . ID=Phyra78377;Parent=Phyra78377;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 201982 202610 . - 0 ID=Phyra78377;Parent=Phyra78377;rank=3 scaffold_31 . exon 201982 202610 . - . ID=Phyra78377.3;Parent=Phyra78377;constitutive=1;ensembl_phase=1;rank=3 scaffold_31 . CDS 202688 203281 . - 0 ID=Phyra78377;Parent=Phyra78377;rank=2 scaffold_31 . exon 202688 203281 . - . ID=Phyra78377.2;Parent=Phyra78377;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 203348 203414 . - 0 ID=Phyra78377;Parent=Phyra78377;rank=1 scaffold_31 . exon 203348 203414 . - . ID=Phyra78377.1;Parent=Phyra78377;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 ensembl protein_coding_gene 205593 205946 . + . ID=Phyra78379;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000050;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 205593 205946 . + . ID=Phyra78379;Parent=Phyra78379;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 205593 205946 . + 0 ID=Phyra78379;Parent=Phyra78379;rank=1 scaffold_31 . exon 205593 205946 . + . ID=Phyra78379.1;Parent=Phyra78379;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 206686 209307 . - . ID=Phyra78380;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000051;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 206686 209307 . - . ID=Phyra78380;Parent=Phyra78380;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 206686 209307 . - 0 ID=Phyra78380;Parent=Phyra78380;rank=1 scaffold_31 . exon 206686 209307 . - . ID=Phyra78380.1;Parent=Phyra78380;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 213563 215506 . + . ID=Phyra78381;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000052;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 213563 215506 . + . ID=Phyra78381;Parent=Phyra78381;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 213563 213603 . + 0 ID=Phyra78381;Parent=Phyra78381;rank=1 scaffold_31 . exon 213563 213603 . + . ID=Phyra78381.1;Parent=Phyra78381;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . CDS 213668 213863 . + 0 ID=Phyra78381;Parent=Phyra78381;rank=2 scaffold_31 . exon 213668 213863 . + . ID=Phyra78381.2;Parent=Phyra78381;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 213941 213997 . + 0 ID=Phyra78381;Parent=Phyra78381;rank=3 scaffold_31 . exon 213941 213997 . + . ID=Phyra78381.3;Parent=Phyra78381;constitutive=1;rank=3 scaffold_31 . CDS 214062 214130 . + 0 ID=Phyra78381;Parent=Phyra78381;rank=4 scaffold_31 . exon 214062 214130 . + . ID=Phyra78381.4;Parent=Phyra78381;constitutive=1;rank=4 scaffold_31 . CDS 214313 214635 . + 0 ID=Phyra78381;Parent=Phyra78381;rank=5 scaffold_31 . exon 214313 214635 . + . ID=Phyra78381.5;Parent=Phyra78381;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_31 . CDS 214710 214847 . + 0 ID=Phyra78381;Parent=Phyra78381;rank=6 scaffold_31 . exon 214710 214847 . + . ID=Phyra78381.6;Parent=Phyra78381;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_31 . CDS 214921 215269 . + 0 ID=Phyra78381;Parent=Phyra78381;rank=7 scaffold_31 . exon 214921 215269 . + . ID=Phyra78381.7;Parent=Phyra78381;constitutive=1;ensembl_phase=2;rank=7 scaffold_31 . CDS 215339 215506 . + 0 ID=Phyra78381;Parent=Phyra78381;rank=8 scaffold_31 . exon 215339 215506 . + . ID=Phyra78381.8;Parent=Phyra78381;constitutive=1;rank=8 scaffold_31 ensembl protein_coding_gene 215957 216884 . - . ID=Phyra78382;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000053;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 215957 216884 . - . ID=Phyra78382;Parent=Phyra78382;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 215957 216290 . - 0 ID=Phyra78382;Parent=Phyra78382;rank=3 scaffold_31 . exon 215957 216290 . - . ID=Phyra78382.3;Parent=Phyra78382;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 . CDS 216342 216455 . - 0 ID=Phyra78382;Parent=Phyra78382;rank=2 scaffold_31 . exon 216342 216455 . - . ID=Phyra78382.2;Parent=Phyra78382;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_31 . CDS 216535 216884 . - 0 ID=Phyra78382;Parent=Phyra78382;rank=1 scaffold_31 . exon 216535 216884 . - . ID=Phyra78382.1;Parent=Phyra78382;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 ensembl protein_coding_gene 218801 220763 . + . ID=Phyra78383;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000054;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 218801 220763 . + . ID=Phyra78383;Parent=Phyra78383;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 218801 218828 . + 0 ID=Phyra78383;Parent=Phyra78383;rank=1 scaffold_31 . exon 218801 218828 . + . ID=Phyra78383.1;Parent=Phyra78383;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 219003 219822 . + 0 ID=Phyra78383;Parent=Phyra78383;rank=2 scaffold_31 . CDS 220003 220169 . + 0 ID=Phyra78383;Parent=Phyra78383;rank=3 scaffold_31 . CDS 220278 220763 . + 0 ID=Phyra78383;Parent=Phyra78383;rank=4 scaffold_31 . biological_region 221311 221312 0.999 - . logic_name=eponine scaffold_31 . repeat_region 222193 222291 . ? . description=trf scaffold_31 . repeat_region 223003 223010 . ? . description=dust scaffold_31 ensembl protein_coding_gene 220953 221777 . - . ID=Phyra71610;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_31000005;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 220953 221777 . - . ID=Phyra71610;Parent=Phyra71610;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 220953 221034 . - 0 ID=Phyra71610;Parent=Phyra71610;rank=5 scaffold_31 . exon 220953 221034 . - . ID=Phyra71610.5;Parent=Phyra71610;constitutive=1;ensembl_phase=2;rank=5 scaffold_31 . CDS 221101 221168 . - 0 ID=Phyra71610;Parent=Phyra71610;rank=4 scaffold_31 . exon 221101 221168 . - . ID=Phyra71610.4;Parent=Phyra71610;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_31 . CDS 221233 221369 . - 0 ID=Phyra71610;Parent=Phyra71610;rank=3 scaffold_31 . exon 221233 221369 . - . ID=Phyra71610.3;Parent=Phyra71610;constitutive=1;ensembl_phase=1;rank=3 scaffold_31 . CDS 221436 221533 . - 0 ID=Phyra71610;Parent=Phyra71610;rank=2 scaffold_31 . exon 221436 221533 . - . ID=Phyra71610.2;Parent=Phyra71610;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 221614 221777 . - 0 ID=Phyra71610;Parent=Phyra71610;rank=1 scaffold_31 . exon 221614 221777 . - . ID=Phyra71610.1;Parent=Phyra71610;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . exon 219003 219822 . + . ID=Phyra78383.2;Parent=Phyra78383;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_31 . exon 220003 220169 . + . ID=Phyra78383.3;Parent=Phyra78383;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_31 . exon 220278 220763 . + . ID=Phyra78383.4;Parent=Phyra78383;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_31 ensembl protein_coding_gene 231636 232640 . + . ID=Phyra78385;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000056;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 231636 232640 . + . ID=Phyra78385;Parent=Phyra78385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 231636 231703 . + 0 ID=Phyra78385;Parent=Phyra78385;rank=1 scaffold_31 . exon 231636 231703 . + . ID=Phyra78385.1;Parent=Phyra78385;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . CDS 231761 232640 . + 0 ID=Phyra78385;Parent=Phyra78385;rank=2 scaffold_31 . exon 231761 232640 . + . ID=Phyra78385.2;Parent=Phyra78385;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . repeat_region 240784 240802 . ? . description=dust scaffold_31 . repeat_region 245285 245298 . ? . description=dust scaffold_31 . biological_region 246967 246968 0.999 + . logic_name=eponine scaffold_31 . repeat_region 248242 251191 . - . description=GypsyPi-1c_I-int scaffold_31 ensembl protein_coding_gene 241184 241796 . + . ID=Phyra78386;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000057;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 241184 241796 . + . ID=Phyra78386;Parent=Phyra78386;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 241184 241396 . + 0 ID=Phyra78386;Parent=Phyra78386;rank=1 scaffold_31 . exon 241184 241396 . + . ID=Phyra78386.1;Parent=Phyra78386;constitutive=1;rank=1 scaffold_31 . CDS 241425 241796 . + 0 ID=Phyra78386;Parent=Phyra78386;rank=2 scaffold_31 . exon 241425 241796 . + . ID=Phyra78386.2;Parent=Phyra78386;constitutive=1;rank=2 scaffold_31 ensembl protein_coding_gene 246143 248247 . + . ID=Phyra78387;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000058;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 246143 248247 . + . ID=Phyra78387;Parent=Phyra78387;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 246143 247442 . + 0 ID=Phyra78387;Parent=Phyra78387;rank=1 scaffold_31 . exon 246143 247442 . + . ID=Phyra78387.1;Parent=Phyra78387;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 247718 248247 . + 0 ID=Phyra78387;Parent=Phyra78387;rank=2 scaffold_31 . exon 247718 248247 . + . ID=Phyra78387.2;Parent=Phyra78387;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 ensembl protein_coding_gene 250443 251635 . - . ID=Phyra78388;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000059;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 250443 251635 . - . ID=Phyra78388;Parent=Phyra78388;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 250443 251269 . - 0 ID=Phyra78388;Parent=Phyra78388;rank=2 scaffold_31 . exon 250443 251269 . - . ID=Phyra78388.2;Parent=Phyra78388;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 251362 251635 . - 0 ID=Phyra78388;Parent=Phyra78388;rank=1 scaffold_31 . exon 251362 251635 . - . ID=Phyra78388.1;Parent=Phyra78388;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 ensembl protein_coding_gene 252696 253661 . - . ID=Phyra78389;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000060;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 252696 253661 . - . ID=Phyra78389;Parent=Phyra78389;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 252696 253661 . - 0 ID=Phyra78389;Parent=Phyra78389;rank=1 scaffold_31 . exon 252696 253661 . - . ID=Phyra78389.1;Parent=Phyra78389;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 258140 259345 . + . ID=Phyra78390;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000061;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 258140 259345 . + . ID=Phyra78390;Parent=Phyra78390;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 258140 259345 . + 0 ID=Phyra78390;Parent=Phyra78390;rank=1 scaffold_31 . exon 258140 259345 . + . ID=Phyra78390.1;Parent=Phyra78390;constitutive=1;rank=1 scaffold_31 . repeat_region 262526 262550 . ? . description=trf scaffold_31 . biological_region 264737 264740 0.999 - . logic_name=eponine scaffold_31 . repeat_region 264958 264982 . ? . description=trf scaffold_31 . repeat_region 265255 265330 . ? . description=trf scaffold_31 ensembl pseudogene 260856 261532 . + . ID=Phyra47103;biotype=pseudogene;external_name=gwEuk.31.16.1;logic_name=jgi_phyra1 scaffold_31 ensembl pseudogene 260856 261532 . + . ID=Phyra47103;Parent=Phyra47103;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_31 . exon 260856 261532 . + . ID=Phyra47103.1;Parent=Phyra47103;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . repeat_region 271853 271860 . ? . description=dust scaffold_31 ensembl protein_coding_gene 269612 270357 . + . ID=Phyra78392;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000063;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 269612 270357 . + . ID=Phyra78392;Parent=Phyra78392;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 269612 269988 . + 0 ID=Phyra78392;Parent=Phyra78392;rank=1 scaffold_31 . exon 269612 269988 . + . ID=Phyra78392.1;Parent=Phyra78392;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . CDS 270054 270357 . + 0 ID=Phyra78392;Parent=Phyra78392;rank=2 scaffold_31 . exon 270054 270357 . + . ID=Phyra78392.2;Parent=Phyra78392;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 ensembl protein_coding_gene 278258 285061 . + . ID=Phyra78393;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000064;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 278258 285061 . + . ID=Phyra78393;Parent=Phyra78393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 278258 279489 . + 0 ID=Phyra78393;Parent=Phyra78393;rank=1 scaffold_31 . exon 278258 279489 . + . ID=Phyra78393.1;Parent=Phyra78393;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . CDS 279601 280010 . + 0 ID=Phyra78393;Parent=Phyra78393;rank=2 scaffold_31 . CDS 280124 282850 . + 0 ID=Phyra78393;Parent=Phyra78393;rank=3 scaffold_31 . CDS 282890 283272 . + 0 ID=Phyra78393;Parent=Phyra78393;rank=4 scaffold_31 . CDS 283297 285029 . + 0 ID=Phyra78393;Parent=Phyra78393;rank=5 scaffold_31 . CDS 285055 285061 . + 0 ID=Phyra78393;Parent=Phyra78393;rank=6 scaffold_31 . biological_region 279676 279685 0.999 + . logic_name=eponine scaffold_31 . biological_region 279964 279965 0.999 + . logic_name=eponine scaffold_31 . biological_region 280009 280013 0.999 - . logic_name=eponine scaffold_31 . biological_region 281053 281056 0.999 + . logic_name=eponine scaffold_31 . biological_region 281397 281400 0.999 - . logic_name=eponine scaffold_31 . biological_region 281755 281756 0.999 + . logic_name=eponine scaffold_31 . biological_region 283744 283746 0.999 + . logic_name=eponine scaffold_31 . exon 279601 280010 . + . ID=Phyra78393.2;Parent=Phyra78393;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_31 . exon 280124 282850 . + . ID=Phyra78393.3;Parent=Phyra78393;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_31 . exon 282890 283272 . + . ID=Phyra78393.4;Parent=Phyra78393;constitutive=1;ensembl_phase=1;rank=4 scaffold_31 . exon 283297 285029 . + . ID=Phyra78393.5;Parent=Phyra78393;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_31 . exon 285055 285061 . + . ID=Phyra78393.6;Parent=Phyra78393;constitutive=1;ensembl_phase=2;rank=6 scaffold_31 ensembl protein_coding_gene 289989 291161 . - . ID=Phyra71611;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_31000006;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 289989 291161 . - . ID=Phyra71611;Parent=Phyra71611;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 289989 291161 . - 0 ID=Phyra71611;Parent=Phyra71611;rank=1 scaffold_31 . exon 289989 291161 . - . ID=Phyra71611.1;Parent=Phyra71611;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 288714 289763 . + . ID=Phyra78394;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000065;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 288714 289763 . + . ID=Phyra78394;Parent=Phyra78394;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 288714 289763 . + 0 ID=Phyra78394;Parent=Phyra78394;rank=1 scaffold_31 . exon 288714 289763 . + . ID=Phyra78394.1;Parent=Phyra78394;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 291439 299430 . - . ID=Phyra95097;biotype=protein_coding;external_name=C_scaffold_31000004;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 291439 299430 . - . ID=Phyra95097;Parent=Phyra95097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 291439 292622 . - 0 ID=Phyra95097;Parent=Phyra95097;rank=11 scaffold_31 . exon 291439 292622 . - . ID=Phyra95097.11;Parent=Phyra95097;constitutive=1;ensembl_phase=1;rank=11 scaffold_31 . CDS 292773 292895 . - 0 ID=Phyra95097;Parent=Phyra95097;rank=10 scaffold_31 . exon 292773 292895 . - . ID=Phyra95097.10;Parent=Phyra95097;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_31 . CDS 293001 293116 . - 0 ID=Phyra95097;Parent=Phyra95097;rank=9 scaffold_31 . exon 293001 293116 . - . ID=Phyra95097.9;Parent=Phyra95097;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_31 . CDS 293264 293666 . - 0 ID=Phyra95097;Parent=Phyra95097;rank=8 scaffold_31 . exon 293264 293666 . - . ID=Phyra95097.8;Parent=Phyra95097;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_31 . CDS 293898 294092 . - 0 ID=Phyra95097;Parent=Phyra95097;rank=7 scaffold_31 . exon 293898 294092 . - . ID=Phyra95097.7;Parent=Phyra95097;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_31 . CDS 294144 294242 . - 0 ID=Phyra95097;Parent=Phyra95097;rank=6 scaffold_31 . exon 294144 294242 . - . ID=Phyra95097.6;Parent=Phyra95097;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_31 . CDS 294387 295254 . - 0 ID=Phyra95097;Parent=Phyra95097;rank=5 scaffold_31 . exon 294387 295254 . - . ID=Phyra95097.5;Parent=Phyra95097;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_31 . CDS 295324 296192 . - 0 ID=Phyra95097;Parent=Phyra95097;rank=4 scaffold_31 . exon 295324 296192 . - . ID=Phyra95097.4;Parent=Phyra95097;constitutive=1;ensembl_phase=1;rank=4 scaffold_31 . CDS 296229 297564 . - 0 ID=Phyra95097;Parent=Phyra95097;rank=3 scaffold_31 . exon 296229 297564 . - . ID=Phyra95097.3;Parent=Phyra95097;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_31 . CDS 297589 298089 . - 0 ID=Phyra95097;Parent=Phyra95097;rank=2 scaffold_31 . exon 297589 298089 . - . ID=Phyra95097.2;Parent=Phyra95097;constitutive=1;rank=2 scaffold_31 . CDS 298114 299430 . - 0 ID=Phyra95097;Parent=Phyra95097;rank=1 scaffold_31 . exon 298114 299430 . - . ID=Phyra95097.1;Parent=Phyra95097;constitutive=1;rank=1 scaffold_31 . biological_region 303718 303720 0.999 + . logic_name=eponine scaffold_31 . biological_region 303775 303781 0.999 + . logic_name=eponine scaffold_31 ensembl protein_coding_gene 299879 301963 . - . ID=Phyra78397;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000068;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 299879 301963 . - . ID=Phyra78397;Parent=Phyra78397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 299879 301963 . - 0 ID=Phyra78397;Parent=Phyra78397;rank=1 scaffold_31 . exon 299879 301963 . - . ID=Phyra78397.1;Parent=Phyra78397;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 302876 304318 . - . ID=Phyra78398;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000069;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 302876 304318 . - . ID=Phyra78398;Parent=Phyra78398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 302876 304318 . - 0 ID=Phyra78398;Parent=Phyra78398;rank=1 scaffold_31 . exon 302876 304318 . - . ID=Phyra78398.1;Parent=Phyra78398;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 316309 318165 . + . ID=Phyra78399;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000070;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 316309 318165 . + . ID=Phyra78399;Parent=Phyra78399;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 316309 316623 . + 0 ID=Phyra78399;Parent=Phyra78399;rank=1 scaffold_31 . exon 316309 316623 . + . ID=Phyra78399.1;Parent=Phyra78399;constitutive=1;rank=1 scaffold_31 . CDS 316685 316785 . + 0 ID=Phyra78399;Parent=Phyra78399;rank=2 scaffold_31 . exon 316685 316785 . + . ID=Phyra78399.2;Parent=Phyra78399;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_31 . CDS 316873 316939 . + 0 ID=Phyra78399;Parent=Phyra78399;rank=3 scaffold_31 . exon 316873 316939 . + . ID=Phyra78399.3;Parent=Phyra78399;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 . CDS 317014 318165 . + 0 ID=Phyra78399;Parent=Phyra78399;rank=4 scaffold_31 . exon 317014 318165 . + . ID=Phyra78399.4;Parent=Phyra78399;constitutive=1;rank=4 scaffold_31 . repeat_region 322548 322555 . ? . description=dust scaffold_31 . repeat_region 325014 325021 . ? . description=dust scaffold_31 . biological_region 327220 327222 0.999 - . logic_name=eponine scaffold_31 . biological_region 328127 328129 0.999 + . logic_name=eponine scaffold_31 ensembl protein_coding_gene 320120 320743 . - . ID=Phyra78400;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000071;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 320120 320743 . - . ID=Phyra78400;Parent=Phyra78400;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 320120 320743 . - 0 ID=Phyra78400;Parent=Phyra78400;rank=1 scaffold_31 . exon 320120 320743 . - . ID=Phyra78400.1;Parent=Phyra78400;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 327371 330249 . + . ID=Phyra78403;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000074;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 327371 330249 . + . ID=Phyra78403;Parent=Phyra78403;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 327371 327448 . + 0 ID=Phyra78403;Parent=Phyra78403;rank=1 scaffold_31 . exon 327371 327448 . + . ID=Phyra78403.1;Parent=Phyra78403;constitutive=1;rank=1 scaffold_31 . CDS 327523 330249 . + 0 ID=Phyra78403;Parent=Phyra78403;rank=2 scaffold_31 . exon 327523 330249 . + . ID=Phyra78403.2;Parent=Phyra78403;constitutive=1;rank=2 scaffold_31 ensembl protein_coding_gene 322874 323843 . + . ID=Phyra95098;biotype=protein_coding;external_name=C_scaffold_31000005;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 322874 323843 . + . ID=Phyra95098;Parent=Phyra95098;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 322874 323306 . + 0 ID=Phyra95098;Parent=Phyra95098;rank=1 scaffold_31 . exon 322874 323306 . + . ID=Phyra95098.1;Parent=Phyra95098;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 323337 323665 . + 0 ID=Phyra95098;Parent=Phyra95098;rank=2 scaffold_31 . exon 323337 323665 . + . ID=Phyra95098.2;Parent=Phyra95098;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 323733 323843 . + 0 ID=Phyra95098;Parent=Phyra95098;rank=3 scaffold_31 . exon 323733 323843 . + . ID=Phyra95098.3;Parent=Phyra95098;constitutive=1;rank=3 scaffold_31 ensembl protein_coding_gene 324510 327000 . - . ID=Phyra95101;biotype=protein_coding;external_name=C_scaffold_31000008;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 324510 327000 . - . ID=Phyra95101;Parent=Phyra95101;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 324510 324523 . - 0 ID=Phyra95101;Parent=Phyra95101;rank=7 scaffold_31 . exon 324510 324523 . - . ID=Phyra95101.7;Parent=Phyra95101;constitutive=1;ensembl_phase=1;rank=7 scaffold_31 . CDS 324699 324875 . - 0 ID=Phyra95101;Parent=Phyra95101;rank=6 scaffold_31 . exon 324699 324875 . - . ID=Phyra95101.6;Parent=Phyra95101;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_31 . CDS 325111 325434 . - 0 ID=Phyra95101;Parent=Phyra95101;rank=5 scaffold_31 . exon 325111 325434 . - . ID=Phyra95101.5;Parent=Phyra95101;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_31 . CDS 325507 325845 . - 0 ID=Phyra95101;Parent=Phyra95101;rank=4 scaffold_31 . exon 325507 325845 . - . ID=Phyra95101.4;Parent=Phyra95101;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_31 . CDS 325940 326095 . - 0 ID=Phyra95101;Parent=Phyra95101;rank=3 scaffold_31 . exon 325940 326095 . - . ID=Phyra95101.3;Parent=Phyra95101;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_31 . CDS 326154 326786 . - 0 ID=Phyra95101;Parent=Phyra95101;rank=2 scaffold_31 . exon 326154 326786 . - . ID=Phyra95101.2;Parent=Phyra95101;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 326874 327000 . - 0 ID=Phyra95101;Parent=Phyra95101;rank=1 scaffold_31 . exon 326874 327000 . - . ID=Phyra95101.1;Parent=Phyra95101;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . repeat_region 328566 328586 . ? . description=trf scaffold_31 . repeat_region 328914 329010 . ? . description=trf scaffold_31 . repeat_region 330222 330246 . ? . description=trf scaffold_31 ensembl protein_coding_gene 333640 335019 . - . ID=Phyra47116;biotype=protein_coding;external_name=gwEuk.31.29.1;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 333640 335019 . - . ID=Phyra47116;Parent=Phyra47116;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 333640 335019 . - 0 ID=Phyra47116;Parent=Phyra47116;rank=1 scaffold_31 . exon 333640 335019 . - . ID=Phyra47116.1;Parent=Phyra47116;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 330563 333351 . - . ID=Phyra78404;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000075;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 330563 333351 . - . ID=Phyra78404;Parent=Phyra78404;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 330563 330591 . - 0 ID=Phyra78404;Parent=Phyra78404;rank=4 scaffold_31 . exon 330563 330591 . - . ID=Phyra78404.4;Parent=Phyra78404;constitutive=1;ensembl_phase=1;rank=4 scaffold_31 . CDS 330672 331802 . - 0 ID=Phyra78404;Parent=Phyra78404;rank=3 scaffold_31 . exon 330672 331802 . - . ID=Phyra78404.3;Parent=Phyra78404;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_31 . CDS 331899 332897 . - 0 ID=Phyra78404;Parent=Phyra78404;rank=2 scaffold_31 . exon 331899 332897 . - . ID=Phyra78404.2;Parent=Phyra78404;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 332931 333351 . - 0 ID=Phyra78404;Parent=Phyra78404;rank=1 scaffold_31 . exon 332931 333351 . - . ID=Phyra78404.1;Parent=Phyra78404;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . repeat_region 346063 346070 . ? . description=dust scaffold_31 ensembl protein_coding_gene 347279 347869 . + . ID=Phyra78406;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000077;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 347279 347869 . + . ID=Phyra78406;Parent=Phyra78406;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 347279 347869 . + 0 ID=Phyra78406;Parent=Phyra78406;rank=1 scaffold_31 . exon 347279 347869 . + . ID=Phyra78406.1;Parent=Phyra78406;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 345012 345597 . + . ID=Phyra95103;biotype=protein_coding;external_name=C_scaffold_31000010;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 345012 345597 . + . ID=Phyra95103;Parent=Phyra95103;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 345012 345468 . + 0 ID=Phyra95103;Parent=Phyra95103;rank=1 scaffold_31 . exon 345012 345468 . + . ID=Phyra95103.1;Parent=Phyra95103;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 345548 345597 . + 0 ID=Phyra95103;Parent=Phyra95103;rank=2 scaffold_31 . exon 345548 345597 . + . ID=Phyra95103.2;Parent=Phyra95103;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 ensembl protein_coding_gene 348003 349346 . - . ID=Phyra95105;biotype=protein_coding;external_name=C_scaffold_31000012;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 348003 349346 . - . ID=Phyra95105;Parent=Phyra95105;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 348003 348920 . - 0 ID=Phyra95105;Parent=Phyra95105;rank=2 scaffold_31 . exon 348003 348920 . - . ID=Phyra95105.2;Parent=Phyra95105;constitutive=1;rank=2 scaffold_31 . CDS 349002 349346 . - 0 ID=Phyra95105;Parent=Phyra95105;rank=1 scaffold_31 . biological_region 348273 348277 0.999 + . logic_name=eponine scaffold_31 . biological_region 349242 349247 0.999 - . logic_name=eponine scaffold_31 . repeat_region 350807 350826 . ? . description=trf scaffold_31 ensembl protein_coding_gene 351895 352896 . - . ID=Phyra78409;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000080;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 351895 352896 . - . ID=Phyra78409;Parent=Phyra78409;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 351895 352896 . - 0 ID=Phyra78409;Parent=Phyra78409;rank=1 scaffold_31 . exon 351895 352896 . - . ID=Phyra78409.1;Parent=Phyra78409;constitutive=1;rank=1 scaffold_31 . exon 349002 349346 . - . ID=Phyra95105.1;Parent=Phyra95105;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 358455 359689 . + . ID=Phyra47122;biotype=protein_coding;external_name=gwEuk.31.35.1;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 358455 359689 . + . ID=Phyra47122;Parent=Phyra47122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 358455 358540 . + 0 ID=Phyra47122;Parent=Phyra47122;rank=1 scaffold_31 . exon 358455 358540 . + . ID=Phyra47122.1;Parent=Phyra47122;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . CDS 358599 358731 . + 0 ID=Phyra47122;Parent=Phyra47122;rank=2 scaffold_31 . exon 358599 358731 . + . ID=Phyra47122.2;Parent=Phyra47122;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 358793 359070 . + 0 ID=Phyra47122;Parent=Phyra47122;rank=3 scaffold_31 . exon 358793 359070 . + . ID=Phyra47122.3;Parent=Phyra47122;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_31 . CDS 359146 359689 . + 0 ID=Phyra47122;Parent=Phyra47122;rank=4 scaffold_31 . exon 359146 359689 . + . ID=Phyra47122.4;Parent=Phyra47122;constitutive=1;ensembl_phase=2;rank=4 scaffold_31 ensembl protein_coding_gene 361646 362515 . - . ID=Phyra78410;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000081;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 361646 362515 . - . ID=Phyra78410;Parent=Phyra78410;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 361646 362515 . - 0 ID=Phyra78410;Parent=Phyra78410;rank=1 scaffold_31 . exon 361646 362515 . - . ID=Phyra78410.1;Parent=Phyra78410;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 364061 364930 . + . ID=Phyra78411;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000082;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 364061 364930 . + . ID=Phyra78411;Parent=Phyra78411;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 364061 364930 . + 0 ID=Phyra78411;Parent=Phyra78411;rank=1 scaffold_31 . exon 364061 364930 . + . ID=Phyra78411.1;Parent=Phyra78411;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 365849 367261 . - . ID=Phyra78412;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000083;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 365849 367261 . - . ID=Phyra78412;Parent=Phyra78412;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 365849 367261 . - 0 ID=Phyra78412;Parent=Phyra78412;rank=1 scaffold_31 . exon 365849 367261 . - . ID=Phyra78412.1;Parent=Phyra78412;constitutive=1;rank=1 scaffold_31 . repeat_region 373807 373830 . ? . description=trf scaffold_31 ensembl protein_coding_gene 372109 377217 . - . ID=Phyra78413;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000084;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 372109 377217 . - . ID=Phyra78413;Parent=Phyra78413;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 372109 377217 . - 0 ID=Phyra78413;Parent=Phyra78413;rank=1 scaffold_31 . exon 372109 377217 . - . ID=Phyra78413.1;Parent=Phyra78413;constitutive=1;rank=1 scaffold_31 . biological_region 382301 382302 0.999 - . logic_name=eponine scaffold_31 . biological_region 383530 383532 0.999 - . logic_name=eponine scaffold_31 . biological_region 386745 386748 0.999 - . logic_name=eponine scaffold_31 . biological_region 386799 386804 0.999 + . logic_name=eponine scaffold_31 . biological_region 386872 386876 0.999 - . logic_name=eponine scaffold_31 . biological_region 386905 386907 0.999 - . logic_name=eponine scaffold_31 . biological_region 387152 387155 0.999 + . logic_name=eponine scaffold_31 ensembl protein_coding_gene 383302 384229 . + . ID=Phyra47131;biotype=protein_coding;external_name=gwEuk.31.44.1;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 383302 384229 . + . ID=Phyra47131;Parent=Phyra47131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 383302 383673 . + 0 ID=Phyra47131;Parent=Phyra47131;rank=1 scaffold_31 . exon 383302 383673 . + . ID=Phyra47131.1;Parent=Phyra47131;constitutive=1;rank=1 scaffold_31 . CDS 383735 384021 . + 0 ID=Phyra47131;Parent=Phyra47131;rank=2 scaffold_31 . exon 383735 384021 . + . ID=Phyra47131.2;Parent=Phyra47131;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_31 . CDS 384088 384229 . + 0 ID=Phyra47131;Parent=Phyra47131;rank=3 scaffold_31 . exon 384088 384229 . + . ID=Phyra47131.3;Parent=Phyra47131;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 ensembl protein_coding_gene 384396 387278 . - . ID=Phyra78415;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000086;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 384396 387278 . - . ID=Phyra78415;Parent=Phyra78415;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 384396 387278 . - 0 ID=Phyra78415;Parent=Phyra78415;rank=1 scaffold_31 . exon 384396 387278 . - . ID=Phyra78415.1;Parent=Phyra78415;constitutive=1;rank=1 scaffold_31 . repeat_region 394095 394104 . ? . description=dust scaffold_31 . repeat_region 397274 398074 . ? . description=dust scaffold_31 ensembl protein_coding_gene 389816 390580 . - . ID=Phyra47135;biotype=protein_coding;external_name=gwEuk.31.48.1;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 389816 390580 . - . ID=Phyra47135;Parent=Phyra47135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 389816 390580 . - 0 ID=Phyra47135;Parent=Phyra47135;rank=1 scaffold_31 . exon 389816 390580 . - . ID=Phyra47135.1;Parent=Phyra47135;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 390562 392965 . - . ID=Phyra78417;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000088;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 390562 392965 . - . ID=Phyra78417;Parent=Phyra78417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 390562 392965 . - 0 ID=Phyra78417;Parent=Phyra78417;rank=1 scaffold_31 . exon 390562 392965 . - . ID=Phyra78417.1;Parent=Phyra78417;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . biological_region 398193 398197 0.999 - . logic_name=eponine scaffold_31 . biological_region 399092 399094 0.999 + . logic_name=eponine scaffold_31 . biological_region 402492 402497 0.999 + . logic_name=eponine scaffold_31 . biological_region 402548 402551 0.999 - . logic_name=eponine scaffold_31 . biological_region 402565 402570 0.999 - . logic_name=eponine scaffold_31 . biological_region 403252 403253 0.999 + . logic_name=eponine scaffold_31 . biological_region 405254 405255 0.999 + . logic_name=eponine scaffold_31 ensembl protein_coding_gene 400411 401367 . - . ID=Phyra47140;biotype=protein_coding;external_name=gwEuk.31.53.1;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 400411 401367 . - . ID=Phyra47140;Parent=Phyra47140;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 400411 401367 . - 0 ID=Phyra47140;Parent=Phyra47140;rank=1 scaffold_31 . exon 400411 401367 . - . ID=Phyra47140.1;Parent=Phyra47140;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 401348 404424 . - . ID=Phyra78419;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000090;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 401348 404424 . - . ID=Phyra78419;Parent=Phyra78419;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 401348 404424 . - 0 ID=Phyra78419;Parent=Phyra78419;rank=1 scaffold_31 . exon 401348 404424 . - . ID=Phyra78419.1;Parent=Phyra78419;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 ensembl protein_coding_gene 404601 405761 . - . ID=Phyra78420;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000091;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 404601 405761 . - . ID=Phyra78420;Parent=Phyra78420;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 404601 405761 . - 0 ID=Phyra78420;Parent=Phyra78420;rank=1 scaffold_31 . exon 404601 405761 . - . ID=Phyra78420.1;Parent=Phyra78420;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 406711 407871 . - . ID=Phyra78421;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000092;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 406711 407871 . - . ID=Phyra78421;Parent=Phyra78421;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 406711 407871 . - 0 ID=Phyra78421;Parent=Phyra78421;rank=1 scaffold_31 . exon 406711 407871 . - . ID=Phyra78421.1;Parent=Phyra78421;constitutive=1;rank=1 scaffold_31 . repeat_region 413170 413200 . ? . description=trf scaffold_31 . repeat_region 414352 414385 . ? . description=trf scaffold_31 . repeat_region 415183 415237 . ? . description=trf scaffold_31 . repeat_region 415197 415331 . ? . description=trf scaffold_31 . repeat_region 415279 415355 . ? . description=trf scaffold_31 ensembl protein_coding_gene 409394 410605 . + . ID=Phyra78422;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000093;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 409394 410605 . + . ID=Phyra78422;Parent=Phyra78422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 409394 410605 . + 0 ID=Phyra78422;Parent=Phyra78422;rank=1 scaffold_31 . exon 409394 410605 . + . ID=Phyra78422.1;Parent=Phyra78422;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 411678 413083 . - . ID=Phyra78423;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000094;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 411678 413083 . - . ID=Phyra78423;Parent=Phyra78423;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 411678 412043 . - 0 ID=Phyra78423;Parent=Phyra78423;rank=3 scaffold_31 . exon 411678 412043 . - . ID=Phyra78423.3;Parent=Phyra78423;constitutive=1;rank=3 scaffold_31 . CDS 412125 412320 . - 0 ID=Phyra78423;Parent=Phyra78423;rank=2 scaffold_31 . exon 412125 412320 . - . ID=Phyra78423.2;Parent=Phyra78423;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 412482 413083 . - 0 ID=Phyra78423;Parent=Phyra78423;rank=1 scaffold_31 . exon 412482 413083 . - . ID=Phyra78423.1;Parent=Phyra78423;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 ensembl protein_coding_gene 413492 415410 . + . ID=Phyra78424;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000095;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 413492 415410 . + . ID=Phyra78424;Parent=Phyra78424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 413492 414120 . + 0 ID=Phyra78424;Parent=Phyra78424;rank=1 scaffold_31 . exon 413492 414120 . + . ID=Phyra78424.1;Parent=Phyra78424;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . CDS 414419 414483 . + 0 ID=Phyra78424;Parent=Phyra78424;rank=2 scaffold_31 . exon 414419 414483 . + . ID=Phyra78424.2;Parent=Phyra78424;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 414556 414864 . + 0 ID=Phyra78424;Parent=Phyra78424;rank=3 scaffold_31 . exon 414556 414864 . + . ID=Phyra78424.3;Parent=Phyra78424;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_31 . CDS 414911 415410 . + 0 ID=Phyra78424;Parent=Phyra78424;rank=4 scaffold_31 . exon 414911 415410 . + . ID=Phyra78424.4;Parent=Phyra78424;constitutive=1;ensembl_phase=1;rank=4 scaffold_31 ensembl protein_coding_gene 415518 420116 . - . ID=Phyra78425;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000096;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 415518 420116 . - . ID=Phyra78425;Parent=Phyra78425;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 415518 420116 . - 0 ID=Phyra78425;Parent=Phyra78425;rank=1 scaffold_31 . exon 415518 420116 . - . ID=Phyra78425.1;Parent=Phyra78425;constitutive=1;rank=1 scaffold_31 . repeat_region 420644 420653 . ? . description=dust scaffold_31 . biological_region 420686 420687 0.999 + . logic_name=eponine scaffold_31 . repeat_region 421355 421404 . ? . description=dust scaffold_31 ensembl protein_coding_gene 421454 423433 . + . ID=Phyra78426;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000097;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 421454 423433 . + . ID=Phyra78426;Parent=Phyra78426;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 421454 423433 . + 0 ID=Phyra78426;Parent=Phyra78426;rank=1 scaffold_31 . exon 421454 423433 . + . ID=Phyra78426.1;Parent=Phyra78426;constitutive=1;rank=1 scaffold_31 . repeat_region 432960 433000 . ? . description=trf scaffold_31 ensembl protein_coding_gene 429537 430780 . - . ID=Phyra95108;biotype=protein_coding;external_name=C_scaffold_31000015;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 429537 430780 . - . ID=Phyra95108;Parent=Phyra95108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 429537 429549 . - 0 ID=Phyra95108;Parent=Phyra95108;rank=3 scaffold_31 . exon 429537 429549 . - . ID=Phyra95108.3;Parent=Phyra95108;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 . CDS 429786 430477 . - 0 ID=Phyra95108;Parent=Phyra95108;rank=2 scaffold_31 . exon 429786 430477 . - . ID=Phyra95108.2;Parent=Phyra95108;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_31 . CDS 430529 430780 . - 0 ID=Phyra95108;Parent=Phyra95108;rank=1 scaffold_31 . exon 430529 430780 . - . ID=Phyra95108.1;Parent=Phyra95108;constitutive=1;rank=1 scaffold_31 . biological_region 442502 442504 0.999 + . logic_name=eponine scaffold_31 . biological_region 442616 442620 0.999 - . logic_name=eponine scaffold_31 . biological_region 442977 442982 0.999 - . logic_name=eponine scaffold_31 . biological_region 443045 443048 0.999 - . logic_name=eponine scaffold_31 . biological_region 443060 443063 0.999 + . logic_name=eponine scaffold_31 . biological_region 443090 443091 0.999 - . logic_name=eponine scaffold_31 . biological_region 443098 443102 0.999 + . logic_name=eponine scaffold_31 . repeat_region 443366 443383 . ? . description=dust scaffold_31 . biological_region 444985 444987 0.999 - . logic_name=eponine scaffold_31 . biological_region 447575 447581 0.999 - . logic_name=eponine scaffold_31 ensembl protein_coding_gene 438190 443194 . - . ID=Phyra78428;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000099;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 438190 443194 . - . ID=Phyra78428;Parent=Phyra78428;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 438190 438678 . - 0 ID=Phyra78428;Parent=Phyra78428;rank=4 scaffold_31 . exon 438190 438678 . - . ID=Phyra78428.4;Parent=Phyra78428;constitutive=1;rank=4 scaffold_31 . CDS 438757 440972 . - 0 ID=Phyra78428;Parent=Phyra78428;rank=3 scaffold_31 . exon 438757 440972 . - . ID=Phyra78428.3;Parent=Phyra78428;constitutive=1;ensembl_phase=1;rank=3 scaffold_31 . CDS 441445 441916 . - 0 ID=Phyra78428;Parent=Phyra78428;rank=2 scaffold_31 . exon 441445 441916 . - . ID=Phyra78428.2;Parent=Phyra78428;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_31 . CDS 441962 443194 . - 0 ID=Phyra78428;Parent=Phyra78428;rank=1 scaffold_31 . exon 441962 443194 . - . ID=Phyra78428.1;Parent=Phyra78428;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 443730 446339 . + . ID=Phyra78429;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000100;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 443730 446339 . + . ID=Phyra78429;Parent=Phyra78429;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 443730 444669 . + 0 ID=Phyra78429;Parent=Phyra78429;rank=1 scaffold_31 . exon 443730 444669 . + . ID=Phyra78429.1;Parent=Phyra78429;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 444830 445366 . + 0 ID=Phyra78429;Parent=Phyra78429;rank=2 scaffold_31 . exon 444830 445366 . + . ID=Phyra78429.2;Parent=Phyra78429;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 445399 446339 . + 0 ID=Phyra78429;Parent=Phyra78429;rank=3 scaffold_31 . exon 445399 446339 . + . ID=Phyra78429.3;Parent=Phyra78429;constitutive=1;ensembl_phase=1;rank=3 scaffold_31 ensembl protein_coding_gene 449133 449615 . - . ID=Phyra78430;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000101;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 449133 449615 . - . ID=Phyra78430;Parent=Phyra78430;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 449133 449615 . - 0 ID=Phyra78430;Parent=Phyra78430;rank=1 scaffold_31 . exon 449133 449615 . - . ID=Phyra78430.1;Parent=Phyra78430;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 450886 452504 . + . ID=Phyra78431;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000102;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 450886 452504 . + . ID=Phyra78431;Parent=Phyra78431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 450886 450893 . + 0 ID=Phyra78431;Parent=Phyra78431;rank=1 scaffold_31 . exon 450886 450893 . + . ID=Phyra78431.1;Parent=Phyra78431;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . CDS 450933 451246 . + 0 ID=Phyra78431;Parent=Phyra78431;rank=2 scaffold_31 . exon 450933 451246 . + . ID=Phyra78431.2;Parent=Phyra78431;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 451669 451847 . + 0 ID=Phyra78431;Parent=Phyra78431;rank=3 scaffold_31 . exon 451669 451847 . + . ID=Phyra78431.3;Parent=Phyra78431;constitutive=1;ensembl_phase=1;rank=3 scaffold_31 . CDS 452103 452504 . + 0 ID=Phyra78431;Parent=Phyra78431;rank=4 scaffold_31 . exon 452103 452504 . + . ID=Phyra78431.4;Parent=Phyra78431;constitutive=1;rank=4 scaffold_31 ensembl protein_coding_gene 456395 458050 . + . ID=Phyra78432;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000103;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 456395 458050 . + . ID=Phyra78432;Parent=Phyra78432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 456395 458050 . + 0 ID=Phyra78432;Parent=Phyra78432;rank=1 scaffold_31 . exon 456395 458050 . + . ID=Phyra78432.1;Parent=Phyra78432;constitutive=1;rank=1 scaffold_31 . repeat_region 459136 459143 . ? . description=dust scaffold_31 . biological_region 459436 459443 0.999 + . logic_name=eponine scaffold_31 . biological_region 459466 459469 0.999 + . logic_name=eponine scaffold_31 . repeat_region 459543 459598 . ? . description=dust scaffold_31 . repeat_region 459543 459604 . ? . description=trf scaffold_31 . repeat_region 459549 459568 . ? . description=trf scaffold_31 . repeat_region 459810 459839 . ? . description=dust scaffold_31 . biological_region 461372 461375 0.999 + . logic_name=eponine scaffold_31 . biological_region 462279 462282 0.999 - . logic_name=eponine scaffold_31 . biological_region 463387 463388 0.999 + . logic_name=eponine scaffold_31 . biological_region 464279 464283 0.999 - . logic_name=eponine scaffold_31 . repeat_region 465942 465950 . ? . description=dust scaffold_31 ensembl protein_coding_gene 462201 463769 . - . ID=Phyra71617;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_31000012;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 462201 463769 . - . ID=Phyra71617;Parent=Phyra71617;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 462201 462308 . - 0 ID=Phyra71617;Parent=Phyra71617;rank=2 scaffold_31 . exon 462201 462308 . - . ID=Phyra71617.2;Parent=Phyra71617;constitutive=1;rank=2 scaffold_31 . CDS 462330 463769 . - 0 ID=Phyra71617;Parent=Phyra71617;rank=1 scaffold_31 . exon 462330 463769 . - . ID=Phyra71617.1;Parent=Phyra71617;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 467071 467802 . - . ID=Phyra71618;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_31000013;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 467071 467802 . - . ID=Phyra71618;Parent=Phyra71618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 467071 467802 . - 0 ID=Phyra71618;Parent=Phyra71618;rank=1 scaffold_31 . exon 467071 467802 . - . ID=Phyra71618.1;Parent=Phyra71618;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 458313 458857 . - . ID=Phyra78433;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000104;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 458313 458857 . - . ID=Phyra78433;Parent=Phyra78433;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 458313 458519 . - 0 ID=Phyra78433;Parent=Phyra78433;rank=2 scaffold_31 . exon 458313 458519 . - . ID=Phyra78433.2;Parent=Phyra78433;constitutive=1;rank=2 scaffold_31 . CDS 458585 458857 . - 0 ID=Phyra78433;Parent=Phyra78433;rank=1 scaffold_31 . exon 458585 458857 . - . ID=Phyra78433.1;Parent=Phyra78433;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 459360 460028 . + . ID=Phyra78434;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000105;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 459360 460028 . + . ID=Phyra78434;Parent=Phyra78434;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 459360 460028 . + 0 ID=Phyra78434;Parent=Phyra78434;rank=1 scaffold_31 . exon 459360 460028 . + . ID=Phyra78434.1;Parent=Phyra78434;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 460693 461449 . - . ID=Phyra78435;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000106;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 460693 461449 . - . ID=Phyra78435;Parent=Phyra78435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 460693 461251 . - 0 ID=Phyra78435;Parent=Phyra78435;rank=2 scaffold_31 . exon 460693 461251 . - . ID=Phyra78435.2;Parent=Phyra78435;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 461319 461449 . - 0 ID=Phyra78435;Parent=Phyra78435;rank=1 scaffold_31 . exon 461319 461449 . - . ID=Phyra78435.1;Parent=Phyra78435;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 ensembl protein_coding_gene 464115 464702 . + . ID=Phyra78437;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000108;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 464115 464702 . + . ID=Phyra78437;Parent=Phyra78437;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 464115 464702 . + 0 ID=Phyra78437;Parent=Phyra78437;rank=1 scaffold_31 . exon 464115 464702 . + . ID=Phyra78437.1;Parent=Phyra78437;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 465471 466897 . + . ID=Phyra78438;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000109;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 465471 466897 . + . ID=Phyra78438;Parent=Phyra78438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 465471 465537 . + 0 ID=Phyra78438;Parent=Phyra78438;rank=1 scaffold_31 . exon 465471 465537 . + . ID=Phyra78438.1;Parent=Phyra78438;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 466111 466744 . + 0 ID=Phyra78438;Parent=Phyra78438;rank=2 scaffold_31 . exon 466111 466744 . + . ID=Phyra78438.2;Parent=Phyra78438;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_31 . CDS 466822 466897 . + 0 ID=Phyra78438;Parent=Phyra78438;rank=3 scaffold_31 . exon 466822 466897 . + . ID=Phyra78438.3;Parent=Phyra78438;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 ensembl protein_coding_gene 468957 471245 . - . ID=Phyra78440;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000111;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 468957 471245 . - . ID=Phyra78440;Parent=Phyra78440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 468957 471245 . - 0 ID=Phyra78440;Parent=Phyra78440;rank=1 scaffold_31 . exon 468957 471245 . - . ID=Phyra78440.1;Parent=Phyra78440;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 472363 474645 . - . ID=Phyra78441;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000112;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 472363 474645 . - . ID=Phyra78441;Parent=Phyra78441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 472363 474645 . - 0 ID=Phyra78441;Parent=Phyra78441;rank=1 scaffold_31 . exon 472363 474645 . - . ID=Phyra78441.1;Parent=Phyra78441;constitutive=1;rank=1 scaffold_31 . repeat_region 479657 479703 . ? . description=trf scaffold_31 . repeat_region 479744 479800 . ? . description=dust scaffold_31 . repeat_region 479868 479914 . ? . description=trf scaffold_31 . repeat_region 481442 481521 . ? . description=dust scaffold_31 . repeat_region 481452 481521 . ? . description=trf scaffold_31 . biological_region 481740 481740 0.999 + . logic_name=eponine scaffold_31 . biological_region 481791 481793 0.999 + . logic_name=eponine scaffold_31 . repeat_region 482057 482066 . ? . description=dust scaffold_31 ensembl protein_coding_gene 479354 481925 . - . ID=Phyra78442;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000113;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 479354 481925 . - . ID=Phyra78442;Parent=Phyra78442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 479354 480154 . - 0 ID=Phyra78442;Parent=Phyra78442;rank=2 scaffold_31 . exon 479354 480154 . - . ID=Phyra78442.2;Parent=Phyra78442;constitutive=1;rank=2 scaffold_31 . CDS 480468 481925 . - 0 ID=Phyra78442;Parent=Phyra78442;rank=1 scaffold_31 . exon 480468 481925 . - . ID=Phyra78442.1;Parent=Phyra78442;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 484743 486020 . - . ID=Phyra78443;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000114;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 484743 486020 . - . ID=Phyra78443;Parent=Phyra78443;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 484743 486020 . - 0 ID=Phyra78443;Parent=Phyra78443;rank=1 scaffold_31 . exon 484743 486020 . - . ID=Phyra78443.1;Parent=Phyra78443;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 487343 489707 . + . ID=Phyra78444;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000115;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 487343 489707 . + . ID=Phyra78444;Parent=Phyra78444;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 487343 489523 . + 0 ID=Phyra78444;Parent=Phyra78444;rank=1 scaffold_31 . exon 487343 489523 . + . ID=Phyra78444.1;Parent=Phyra78444;constitutive=1;rank=1 scaffold_31 . CDS 489582 489707 . + 0 ID=Phyra78444;Parent=Phyra78444;rank=2 scaffold_31 . exon 489582 489707 . + . ID=Phyra78444.2;Parent=Phyra78444;constitutive=1;rank=2 scaffold_31 ensembl protein_coding_gene 491385 492908 . - . ID=Phyra78445;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000116;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 491385 492908 . - . ID=Phyra78445;Parent=Phyra78445;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 491385 492908 . - 0 ID=Phyra78445;Parent=Phyra78445;rank=1 scaffold_31 . exon 491385 492908 . - . ID=Phyra78445.1;Parent=Phyra78445;constitutive=1;rank=1 scaffold_31 . repeat_region 497734 497888 . ? . description=trf scaffold_31 . repeat_region 497737 497871 . ? . description=trf scaffold_31 . repeat_region 497869 497906 . ? . description=trf scaffold_31 . repeat_region 498385 498430 . ? . description=trf scaffold_31 . repeat_region 502848 502857 . ? . description=dust scaffold_31 . biological_region 505420 505426 0.999 - . logic_name=eponine scaffold_31 ensembl protein_coding_gene 497590 498447 . + . ID=Phyra78446;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000117;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 497590 498447 . + . ID=Phyra78446;Parent=Phyra78446;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 497590 498110 . + 0 ID=Phyra78446;Parent=Phyra78446;rank=1 scaffold_31 . exon 497590 498110 . + . ID=Phyra78446.1;Parent=Phyra78446;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . CDS 498205 498211 . + 0 ID=Phyra78446;Parent=Phyra78446;rank=2 scaffold_31 . exon 498205 498211 . + . ID=Phyra78446.2;Parent=Phyra78446;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 498253 498447 . + 0 ID=Phyra78446;Parent=Phyra78446;rank=3 scaffold_31 . exon 498253 498447 . + . ID=Phyra78446.3;Parent=Phyra78446;constitutive=1;rank=3 scaffold_31 ensembl protein_coding_gene 505240 506007 . + . ID=Phyra78449;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_31000120;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 505240 506007 . + . ID=Phyra78449;Parent=Phyra78449;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 505240 506007 . + 0 ID=Phyra78449;Parent=Phyra78449;rank=1 scaffold_31 . exon 505240 506007 . + . ID=Phyra78449.1;Parent=Phyra78449;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 500918 502332 . + . ID=Phyra95112;biotype=protein_coding;external_name=C_scaffold_31000019;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 500918 502332 . + . ID=Phyra95112;Parent=Phyra95112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 500918 500989 . + 0 ID=Phyra95112;Parent=Phyra95112;rank=1 scaffold_31 . exon 500918 500989 . + . ID=Phyra95112.1;Parent=Phyra95112;constitutive=1;rank=1 scaffold_31 . CDS 501053 501283 . + 0 ID=Phyra95112;Parent=Phyra95112;rank=2 scaffold_31 . exon 501053 501283 . + . ID=Phyra95112.2;Parent=Phyra95112;constitutive=1;rank=2 scaffold_31 . CDS 501364 501435 . + 0 ID=Phyra95112;Parent=Phyra95112;rank=3 scaffold_31 . exon 501364 501435 . + . ID=Phyra95112.3;Parent=Phyra95112;constitutive=1;rank=3 scaffold_31 . CDS 501510 501660 . + 0 ID=Phyra95112;Parent=Phyra95112;rank=4 scaffold_31 . exon 501510 501660 . + . ID=Phyra95112.4;Parent=Phyra95112;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_31 . CDS 501723 501877 . + 0 ID=Phyra95112;Parent=Phyra95112;rank=5 scaffold_31 . exon 501723 501877 . + . ID=Phyra95112.5;Parent=Phyra95112;constitutive=1;ensembl_phase=1;rank=5 scaffold_31 . CDS 501941 502051 . + 0 ID=Phyra95112;Parent=Phyra95112;rank=6 scaffold_31 . exon 501941 502051 . + . ID=Phyra95112.6;Parent=Phyra95112;constitutive=1;rank=6 scaffold_31 . CDS 502114 502332 . + 0 ID=Phyra95112;Parent=Phyra95112;rank=7 scaffold_31 . exon 502114 502332 . + . ID=Phyra95112.7;Parent=Phyra95112;constitutive=1;rank=7 scaffold_31 ensembl protein_coding_gene 502412 505054 . - . ID=Phyra95113;biotype=protein_coding;external_name=C_scaffold_31000020;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 502412 505054 . - . ID=Phyra95113;Parent=Phyra95113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 502412 502584 . - 0 ID=Phyra95113;Parent=Phyra95113;rank=8 scaffold_31 . exon 502412 502584 . - . ID=Phyra95113.8;Parent=Phyra95113;constitutive=1;ensembl_phase=1;rank=8 scaffold_31 . CDS 502647 502834 . - 0 ID=Phyra95113;Parent=Phyra95113;rank=7 scaffold_31 . exon 502647 502834 . - . ID=Phyra95113.7;Parent=Phyra95113;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_31 . CDS 502923 503234 . - 0 ID=Phyra95113;Parent=Phyra95113;rank=6 scaffold_31 . exon 502923 503234 . - . ID=Phyra95113.6;Parent=Phyra95113;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_31 . CDS 503304 504102 . - 0 ID=Phyra95113;Parent=Phyra95113;rank=5 scaffold_31 . exon 503304 504102 . - . ID=Phyra95113.5;Parent=Phyra95113;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_31 . CDS 504174 504318 . - 0 ID=Phyra95113;Parent=Phyra95113;rank=4 scaffold_31 . exon 504174 504318 . - . ID=Phyra95113.4;Parent=Phyra95113;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_31 . CDS 504397 504693 . - 0 ID=Phyra95113;Parent=Phyra95113;rank=3 scaffold_31 . exon 504397 504693 . - . ID=Phyra95113.3;Parent=Phyra95113;constitutive=1;rank=3 scaffold_31 . CDS 504833 504836 . - 0 ID=Phyra95113;Parent=Phyra95113;rank=2 scaffold_31 . exon 504833 504836 . - . ID=Phyra95113.2;Parent=Phyra95113;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 504963 505054 . - 0 ID=Phyra95113;Parent=Phyra95113;rank=1 scaffold_31 . exon 504963 505054 . - . ID=Phyra95113.1;Parent=Phyra95113;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 ensembl protein_coding_gene 506427 507246 . - . ID=Phyra95115;biotype=protein_coding;external_name=C_scaffold_31000022;logic_name=jgi_phyra1 scaffold_31 ensembl transcript 506427 507246 . - . ID=Phyra95115;Parent=Phyra95115;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_31 . CDS 506427 506645 . - 0 ID=Phyra95115;Parent=Phyra95115;rank=4 scaffold_31 . exon 506427 506645 . - . ID=Phyra95115.4;Parent=Phyra95115;constitutive=1;rank=4 scaffold_31 . CDS 506708 506818 . - 0 ID=Phyra95115;Parent=Phyra95115;rank=3 scaffold_31 . exon 506708 506818 . - . ID=Phyra95115.3;Parent=Phyra95115;constitutive=1;rank=3 scaffold_31 . CDS 506882 507036 . - 0 ID=Phyra95115;Parent=Phyra95115;rank=2 scaffold_31 . exon 506882 507036 . - . ID=Phyra95115.2;Parent=Phyra95115;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 507099 507246 . - 0 ID=Phyra95115;Parent=Phyra95115;rank=1 scaffold_31 . exon 507099 507246 . - . ID=Phyra95115.1;Parent=Phyra95115;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_30 1 522054 scaffold_30 . biological_region 305 308 0.999 + . logic_name=eponine scaffold_30 . biological_region 637 640 0.999 - . logic_name=eponine scaffold_30 . biological_region 994 998 0.999 + . logic_name=eponine scaffold_30 . biological_region 1466 1466 0.999 - . logic_name=eponine scaffold_30 . biological_region 1991 1992 0.999 + . logic_name=eponine scaffold_30 . biological_region 4250 4253 0.999 - . logic_name=eponine scaffold_30 . biological_region 4269 4277 0.999 - . logic_name=eponine scaffold_30 . biological_region 6465 6467 0.999 + . logic_name=eponine scaffold_30 . biological_region 7535 7538 0.999 + . logic_name=eponine scaffold_30 . repeat_region 7597 7654 . ? . description=trf scaffold_30 . repeat_region 7887 7894 . ? . description=dust scaffold_30 . repeat_region 9368 9384 . ? . description=dust scaffold_30 ensembl protein_coding_gene 3475 4275 . - . ID=Phyra71590;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_30000001;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 3475 4275 . - . ID=Phyra71590;Parent=Phyra71590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 3475 3639 . - 0 ID=Phyra71590;Parent=Phyra71590;rank=4 scaffold_30 . exon 3475 3639 . - . ID=Phyra71590.4;Parent=Phyra71590;constitutive=1;rank=4 scaffold_30 . CDS 3698 3781 . - 0 ID=Phyra71590;Parent=Phyra71590;rank=3 scaffold_30 . exon 3698 3781 . - . ID=Phyra71590.3;Parent=Phyra71590;constitutive=1;rank=3 scaffold_30 . CDS 3853 4163 . - 0 ID=Phyra71590;Parent=Phyra71590;rank=2 scaffold_30 . exon 3853 4163 . - . ID=Phyra71590.2;Parent=Phyra71590;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 4194 4275 . - 0 ID=Phyra71590;Parent=Phyra71590;rank=1 scaffold_30 . exon 4194 4275 . - . ID=Phyra71590.1;Parent=Phyra71590;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 6013 7725 . + . ID=Phyra71591;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_30000002;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 6013 7725 . + . ID=Phyra71591;Parent=Phyra71591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 6013 7725 . + 0 ID=Phyra71591;Parent=Phyra71591;rank=1 scaffold_30 . exon 6013 7725 . + . ID=Phyra71591.1;Parent=Phyra71591;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 969 3128 . + . ID=Phyra78196;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000001;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 969 3128 . + . ID=Phyra78196;Parent=Phyra78196;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 969 3128 . + 0 ID=Phyra78196;Parent=Phyra78196;rank=1 scaffold_30 . exon 969 3128 . + . ID=Phyra78196.1;Parent=Phyra78196;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 9759 10513 . + . ID=Phyra78199;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000004;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 9759 10513 . + . ID=Phyra78199;Parent=Phyra78199;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 9759 9806 . + 0 ID=Phyra78199;Parent=Phyra78199;rank=1 scaffold_30 . exon 9759 9806 . + . ID=Phyra78199.1;Parent=Phyra78199;constitutive=1;rank=1 scaffold_30 . CDS 9865 9938 . + 0 ID=Phyra78199;Parent=Phyra78199;rank=2 scaffold_30 . CDS 10010 10232 . + 0 ID=Phyra78199;Parent=Phyra78199;rank=3 scaffold_30 . CDS 10352 10513 . + 0 ID=Phyra78199;Parent=Phyra78199;rank=4 scaffold_30 . exon 9865 9938 . + . ID=Phyra78199.2;Parent=Phyra78199;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . exon 10010 10232 . + . ID=Phyra78199.3;Parent=Phyra78199;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . exon 10352 10513 . + . ID=Phyra78199.4;Parent=Phyra78199;constitutive=1;rank=4 scaffold_30 . repeat_region 19748 19755 . ? . description=dust scaffold_30 . repeat_region 19867 19916 . ? . description=dust scaffold_30 . repeat_region 20170 20177 . ? . description=dust scaffold_30 . repeat_region 21751 21759 . ? . description=dust scaffold_30 . repeat_region 22052 22061 . ? . description=dust scaffold_30 . repeat_region 24177 24184 . ? . description=dust scaffold_30 . repeat_region 25736 25743 . ? . description=dust scaffold_30 . repeat_region 27185 27230 . ? . description=trf scaffold_30 . biological_region 29263 29264 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 21923 23324 . - . ID=Phyra78200;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000005;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 21923 23324 . - . ID=Phyra78200;Parent=Phyra78200;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 21923 21940 . - 0 ID=Phyra78200;Parent=Phyra78200;rank=6 scaffold_30 . exon 21923 21940 . - . ID=Phyra78200.6;Parent=Phyra78200;constitutive=1;rank=6 scaffold_30 . CDS 22209 22397 . - 0 ID=Phyra78200;Parent=Phyra78200;rank=5 scaffold_30 . exon 22209 22397 . - . ID=Phyra78200.5;Parent=Phyra78200;constitutive=1;rank=5 scaffold_30 . CDS 22482 22711 . - 0 ID=Phyra78200;Parent=Phyra78200;rank=4 scaffold_30 . exon 22482 22711 . - . ID=Phyra78200.4;Parent=Phyra78200;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 22793 22832 . - 0 ID=Phyra78200;Parent=Phyra78200;rank=3 scaffold_30 . exon 22793 22832 . - . ID=Phyra78200.3;Parent=Phyra78200;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . CDS 22878 23178 . - 0 ID=Phyra78200;Parent=Phyra78200;rank=2 scaffold_30 . exon 22878 23178 . - . ID=Phyra78200.2;Parent=Phyra78200;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 23215 23324 . - 0 ID=Phyra78200;Parent=Phyra78200;rank=1 scaffold_30 . exon 23215 23324 . - . ID=Phyra78200.1;Parent=Phyra78200;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 25842 26326 . - . ID=Phyra78201;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000006;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 25842 26326 . - . ID=Phyra78201;Parent=Phyra78201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 25842 26067 . - 0 ID=Phyra78201;Parent=Phyra78201;rank=2 scaffold_30 . exon 25842 26067 . - . ID=Phyra78201.2;Parent=Phyra78201;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 26136 26326 . - 0 ID=Phyra78201;Parent=Phyra78201;rank=1 scaffold_30 . exon 26136 26326 . - . ID=Phyra78201.1;Parent=Phyra78201;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 27481 29387 . - . ID=Phyra78202;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000007;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 27481 29387 . - . ID=Phyra78202;Parent=Phyra78202;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 27481 27573 . - 0 ID=Phyra78202;Parent=Phyra78202;rank=5 scaffold_30 . exon 27481 27573 . - . ID=Phyra78202.5;Parent=Phyra78202;constitutive=1;rank=5 scaffold_30 . CDS 27642 27837 . - 0 ID=Phyra78202;Parent=Phyra78202;rank=4 scaffold_30 . exon 27642 27837 . - . ID=Phyra78202.4;Parent=Phyra78202;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 27913 28083 . - 0 ID=Phyra78202;Parent=Phyra78202;rank=3 scaffold_30 . exon 27913 28083 . - . ID=Phyra78202.3;Parent=Phyra78202;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_30 . CDS 28160 28917 . - 0 ID=Phyra78202;Parent=Phyra78202;rank=2 scaffold_30 . exon 28160 28917 . - . ID=Phyra78202.2;Parent=Phyra78202;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 28986 29387 . - 0 ID=Phyra78202;Parent=Phyra78202;rank=1 scaffold_30 . exon 28986 29387 . - . ID=Phyra78202.1;Parent=Phyra78202;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 30046 31781 . + . ID=Phyra78203;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000008;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 30046 31781 . + . ID=Phyra78203;Parent=Phyra78203;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 30046 30059 . + 0 ID=Phyra78203;Parent=Phyra78203;rank=1 scaffold_30 . exon 30046 30059 . + . ID=Phyra78203.1;Parent=Phyra78203;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 30128 30181 . + 0 ID=Phyra78203;Parent=Phyra78203;rank=2 scaffold_30 . exon 30128 30181 . + . ID=Phyra78203.2;Parent=Phyra78203;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_30 . CDS 30248 31109 . + 0 ID=Phyra78203;Parent=Phyra78203;rank=3 scaffold_30 . exon 30248 31109 . + . ID=Phyra78203.3;Parent=Phyra78203;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 31181 31424 . + 0 ID=Phyra78203;Parent=Phyra78203;rank=4 scaffold_30 . exon 31181 31424 . + . ID=Phyra78203.4;Parent=Phyra78203;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_30 . CDS 31495 31781 . + 0 ID=Phyra78203;Parent=Phyra78203;rank=5 scaffold_30 . exon 31495 31781 . + . ID=Phyra78203.5;Parent=Phyra78203;constitutive=1;ensembl_phase=1;rank=5 scaffold_30 ensembl protein_coding_gene 31944 35277 . + . ID=Phyra78204;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000009;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 31944 35277 . + . ID=Phyra78204;Parent=Phyra78204;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 31944 32745 . + 0 ID=Phyra78204;Parent=Phyra78204;rank=1 scaffold_30 . exon 31944 32745 . + . ID=Phyra78204.1;Parent=Phyra78204;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 32865 33130 . + 0 ID=Phyra78204;Parent=Phyra78204;rank=2 scaffold_30 . exon 32865 33130 . + . ID=Phyra78204.2;Parent=Phyra78204;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 33199 33349 . + 0 ID=Phyra78204;Parent=Phyra78204;rank=3 scaffold_30 . exon 33199 33349 . + . ID=Phyra78204.3;Parent=Phyra78204;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . CDS 34015 34296 . + 0 ID=Phyra78204;Parent=Phyra78204;rank=4 scaffold_30 . exon 34015 34296 . + . ID=Phyra78204.4;Parent=Phyra78204;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 34594 34965 . + 0 ID=Phyra78204;Parent=Phyra78204;rank=5 scaffold_30 . exon 34594 34965 . + . ID=Phyra78204.5;Parent=Phyra78204;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_30 . CDS 35005 35181 . + 0 ID=Phyra78204;Parent=Phyra78204;rank=6 scaffold_30 . exon 35005 35181 . + . ID=Phyra78204.6;Parent=Phyra78204;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_30 . CDS 35222 35277 . + 0 ID=Phyra78204;Parent=Phyra78204;rank=7 scaffold_30 . exon 35222 35277 . + . ID=Phyra78204.7;Parent=Phyra78204;constitutive=1;ensembl_phase=1;rank=7 scaffold_30 ensembl protein_coding_gene 36083 37297 . - . ID=Phyra78205;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000010;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 36083 37297 . - . ID=Phyra78205;Parent=Phyra78205;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 36083 37297 . - 0 ID=Phyra78205;Parent=Phyra78205;rank=1 scaffold_30 . exon 36083 37297 . - . ID=Phyra78205.1;Parent=Phyra78205;constitutive=1;rank=1 scaffold_30 . biological_region 43157 43160 0.999 + . logic_name=eponine scaffold_30 . biological_region 43254 43257 0.999 - . logic_name=eponine scaffold_30 . biological_region 43468 43468 0.999 - . logic_name=eponine scaffold_30 . biological_region 43523 43524 0.999 + . logic_name=eponine scaffold_30 . biological_region 43691 43695 0.999 - . logic_name=eponine scaffold_30 . repeat_region 44815 45032 . ? . description=dust scaffold_30 . biological_region 46122 46126 0.999 - . logic_name=eponine scaffold_30 . biological_region 46281 46282 0.999 - . logic_name=eponine scaffold_30 . biological_region 46338 46341 0.999 - . logic_name=eponine scaffold_30 . biological_region 46737 46741 0.999 - . logic_name=eponine scaffold_30 . biological_region 46787 46790 0.999 - . logic_name=eponine scaffold_30 . repeat_region 47944 47990 . ? . description=trf scaffold_30 ensembl protein_coding_gene 42250 43698 . - . ID=Phyra78207;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000012;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 42250 43698 . - . ID=Phyra78207;Parent=Phyra78207;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 42250 42828 . - 0 ID=Phyra78207;Parent=Phyra78207;rank=3 scaffold_30 . exon 42250 42828 . - . ID=Phyra78207.3;Parent=Phyra78207;constitutive=1;rank=3 scaffold_30 . CDS 42924 43466 . - 0 ID=Phyra78207;Parent=Phyra78207;rank=2 scaffold_30 . exon 42924 43466 . - . ID=Phyra78207.2;Parent=Phyra78207;constitutive=1;rank=2 scaffold_30 . CDS 43534 43698 . - 0 ID=Phyra78207;Parent=Phyra78207;rank=1 scaffold_30 . exon 43534 43698 . - . ID=Phyra78207.1;Parent=Phyra78207;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 44682 45712 . + . ID=Phyra78208;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000013;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 44682 45712 . + . ID=Phyra78208;Parent=Phyra78208;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 44682 44783 . + 0 ID=Phyra78208;Parent=Phyra78208;rank=1 scaffold_30 . exon 44682 44783 . + . ID=Phyra78208.1;Parent=Phyra78208;constitutive=1;rank=1 scaffold_30 . CDS 45094 45202 . + 0 ID=Phyra78208;Parent=Phyra78208;rank=2 scaffold_30 . exon 45094 45202 . + . ID=Phyra78208.2;Parent=Phyra78208;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 45477 45712 . + 0 ID=Phyra78208;Parent=Phyra78208;rank=3 scaffold_30 . exon 45477 45712 . + . ID=Phyra78208.3;Parent=Phyra78208;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 ensembl protein_coding_gene 45939 49408 . + . ID=Phyra78209;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000014;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 45939 49408 . + . ID=Phyra78209;Parent=Phyra78209;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 45939 49143 . + 0 ID=Phyra78209;Parent=Phyra78209;rank=1 scaffold_30 . exon 45939 49143 . + . ID=Phyra78209.1;Parent=Phyra78209;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 49224 49408 . + 0 ID=Phyra78209;Parent=Phyra78209;rank=2 scaffold_30 . exon 49224 49408 . + . ID=Phyra78209.2;Parent=Phyra78209;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 ensembl protein_coding_gene 40274 41480 . + . ID=Phyra95038;biotype=protein_coding;external_name=C_scaffold_30000001;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 40274 41480 . + . ID=Phyra95038;Parent=Phyra95038;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 40274 40309 . + 0 ID=Phyra95038;Parent=Phyra95038;rank=1 scaffold_30 . exon 40274 40309 . + . ID=Phyra95038.1;Parent=Phyra95038;constitutive=1;rank=1 scaffold_30 . CDS 40627 40794 . + 0 ID=Phyra95038;Parent=Phyra95038;rank=2 scaffold_30 . exon 40627 40794 . + . ID=Phyra95038.2;Parent=Phyra95038;constitutive=1;rank=2 scaffold_30 . CDS 40885 41210 . + 0 ID=Phyra95038;Parent=Phyra95038;rank=3 scaffold_30 . exon 40885 41210 . + . ID=Phyra95038.3;Parent=Phyra95038;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_30 . CDS 41280 41355 . + 0 ID=Phyra95038;Parent=Phyra95038;rank=4 scaffold_30 . exon 41280 41355 . + . ID=Phyra95038.4;Parent=Phyra95038;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 41469 41480 . + 0 ID=Phyra95038;Parent=Phyra95038;rank=5 scaffold_30 . exon 41469 41480 . + . ID=Phyra95038.5;Parent=Phyra95038;constitutive=1;rank=5 scaffold_30 ensembl protein_coding_gene 52423 53172 . - . ID=Phyra78211;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000016;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 52423 53172 . - . ID=Phyra78211;Parent=Phyra78211;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 52423 53172 . - 0 ID=Phyra78211;Parent=Phyra78211;rank=1 scaffold_30 . exon 52423 53172 . - . ID=Phyra78211.1;Parent=Phyra78211;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 55054 57112 . - . ID=Phyra78212;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000017;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 55054 57112 . - . ID=Phyra78212;Parent=Phyra78212;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 55054 55468 . - 0 ID=Phyra78212;Parent=Phyra78212;rank=4 scaffold_30 . exon 55054 55468 . - . ID=Phyra78212.4;Parent=Phyra78212;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 55549 55859 . - 0 ID=Phyra78212;Parent=Phyra78212;rank=3 scaffold_30 . exon 55549 55859 . - . ID=Phyra78212.3;Parent=Phyra78212;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_30 . CDS 55930 56416 . - 0 ID=Phyra78212;Parent=Phyra78212;rank=2 scaffold_30 . exon 55930 56416 . - . ID=Phyra78212.2;Parent=Phyra78212;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 56484 57112 . - 0 ID=Phyra78212;Parent=Phyra78212;rank=1 scaffold_30 . exon 56484 57112 . - . ID=Phyra78212.1;Parent=Phyra78212;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 57564 58853 . + . ID=Phyra78213;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000018;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 57564 58853 . + . ID=Phyra78213;Parent=Phyra78213;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 57564 58853 . + 0 ID=Phyra78213;Parent=Phyra78213;rank=1 scaffold_30 . exon 57564 58853 . + . ID=Phyra78213.1;Parent=Phyra78213;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 49712 51754 . - . ID=Phyra95041;biotype=protein_coding;external_name=C_scaffold_30000004;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 49712 51754 . - . ID=Phyra95041;Parent=Phyra95041;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 49712 49791 . - 0 ID=Phyra95041;Parent=Phyra95041;rank=10 scaffold_30 . exon 49712 49791 . - . ID=Phyra95041.10;Parent=Phyra95041;constitutive=1;ensembl_phase=1;rank=10 scaffold_30 . CDS 49861 50037 . - 0 ID=Phyra95041;Parent=Phyra95041;rank=9 scaffold_30 . exon 49861 50037 . - . ID=Phyra95041.9;Parent=Phyra95041;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_30 . CDS 50098 50176 . - 0 ID=Phyra95041;Parent=Phyra95041;rank=8 scaffold_30 . exon 50098 50176 . - . ID=Phyra95041.8;Parent=Phyra95041;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_30 . CDS 50274 50423 . - 0 ID=Phyra95041;Parent=Phyra95041;rank=7 scaffold_30 . exon 50274 50423 . - . ID=Phyra95041.7;Parent=Phyra95041;constitutive=1;rank=7 scaffold_30 . CDS 50609 50659 . - 0 ID=Phyra95041;Parent=Phyra95041;rank=6 scaffold_30 . exon 50609 50659 . - . ID=Phyra95041.6;Parent=Phyra95041;constitutive=1;rank=6 scaffold_30 . CDS 50722 50778 . - 0 ID=Phyra95041;Parent=Phyra95041;rank=5 scaffold_30 . exon 50722 50778 . - . ID=Phyra95041.5;Parent=Phyra95041;constitutive=1;rank=5 scaffold_30 . CDS 50846 51186 . - 0 ID=Phyra95041;Parent=Phyra95041;rank=4 scaffold_30 . exon 50846 51186 . - . ID=Phyra95041.4;Parent=Phyra95041;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 51264 51498 . - 0 ID=Phyra95041;Parent=Phyra95041;rank=3 scaffold_30 . exon 51264 51498 . - . ID=Phyra95041.3;Parent=Phyra95041;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . CDS 51587 51631 . - 0 ID=Phyra95041;Parent=Phyra95041;rank=2 scaffold_30 . exon 51587 51631 . - . ID=Phyra95041.2;Parent=Phyra95041;constitutive=1;rank=2 scaffold_30 . CDS 51704 51754 . - 0 ID=Phyra95041;Parent=Phyra95041;rank=1 scaffold_30 . exon 51704 51754 . - . ID=Phyra95041.1;Parent=Phyra95041;constitutive=1;rank=1 scaffold_30 . repeat_region 60787 60846 . ? . description=trf scaffold_30 . biological_region 62755 62758 0.999 - . logic_name=eponine scaffold_30 . repeat_region 63059 63067 . ? . description=dust scaffold_30 . biological_region 64442 64443 0.999 + . logic_name=eponine scaffold_30 . biological_region 65228 65229 0.999 - . logic_name=eponine scaffold_30 . biological_region 65283 65286 0.999 - . logic_name=eponine scaffold_30 . biological_region 66403 66406 0.999 + . logic_name=eponine scaffold_30 . biological_region 68525 68529 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 59616 61249 . - . ID=Phyra78214;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000019;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 59616 61249 . - . ID=Phyra78214;Parent=Phyra78214;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 59616 59693 . - 0 ID=Phyra78214;Parent=Phyra78214;rank=8 scaffold_30 . exon 59616 59693 . - . ID=Phyra78214.8;Parent=Phyra78214;constitutive=1;rank=8 scaffold_30 . CDS 59760 60003 . - 0 ID=Phyra78214;Parent=Phyra78214;rank=7 scaffold_30 . exon 59760 60003 . - . ID=Phyra78214.7;Parent=Phyra78214;constitutive=1;ensembl_phase=2;rank=7 scaffold_30 . CDS 60091 60203 . - 0 ID=Phyra78214;Parent=Phyra78214;rank=6 scaffold_30 . exon 60091 60203 . - . ID=Phyra78214.6;Parent=Phyra78214;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_30 . CDS 60284 60355 . - 0 ID=Phyra78214;Parent=Phyra78214;rank=5 scaffold_30 . exon 60284 60355 . - . ID=Phyra78214.5;Parent=Phyra78214;constitutive=1;rank=5 scaffold_30 . CDS 60420 60567 . - 0 ID=Phyra78214;Parent=Phyra78214;rank=4 scaffold_30 . exon 60420 60567 . - . ID=Phyra78214.4;Parent=Phyra78214;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 60635 60873 . - 0 ID=Phyra78214;Parent=Phyra78214;rank=3 scaffold_30 . exon 60635 60873 . - . ID=Phyra78214.3;Parent=Phyra78214;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_30 . CDS 60941 61167 . - 0 ID=Phyra78214;Parent=Phyra78214;rank=2 scaffold_30 . exon 60941 61167 . - . ID=Phyra78214.2;Parent=Phyra78214;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 61237 61249 . - 0 ID=Phyra78214;Parent=Phyra78214;rank=1 scaffold_30 . exon 61237 61249 . - . ID=Phyra78214.1;Parent=Phyra78214;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 65103 71639 . + . ID=Phyra78216;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000021;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 65103 71639 . + . ID=Phyra78216;Parent=Phyra78216;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 65103 65642 . + 0 ID=Phyra78216;Parent=Phyra78216;rank=1 scaffold_30 . exon 65103 65642 . + . ID=Phyra78216.1;Parent=Phyra78216;constitutive=1;rank=1 scaffold_30 . CDS 65743 66066 . + 0 ID=Phyra78216;Parent=Phyra78216;rank=2 scaffold_30 . exon 65743 66066 . + . ID=Phyra78216.2;Parent=Phyra78216;constitutive=1;rank=2 scaffold_30 . CDS 66143 66557 . + 0 ID=Phyra78216;Parent=Phyra78216;rank=3 scaffold_30 . exon 66143 66557 . + . ID=Phyra78216.3;Parent=Phyra78216;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . CDS 66670 67301 . + 0 ID=Phyra78216;Parent=Phyra78216;rank=4 scaffold_30 . exon 66670 67301 . + . ID=Phyra78216.4;Parent=Phyra78216;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 67366 67710 . + 0 ID=Phyra78216;Parent=Phyra78216;rank=5 scaffold_30 . exon 67366 67710 . + . ID=Phyra78216.5;Parent=Phyra78216;constitutive=1;rank=5 scaffold_30 . CDS 67790 68091 . + 0 ID=Phyra78216;Parent=Phyra78216;rank=6 scaffold_30 . exon 67790 68091 . + . ID=Phyra78216.6;Parent=Phyra78216;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_30 . CDS 68222 69086 . + 0 ID=Phyra78216;Parent=Phyra78216;rank=7 scaffold_30 . exon 68222 69086 . + . ID=Phyra78216.7;Parent=Phyra78216;constitutive=1;ensembl_phase=2;rank=7 scaffold_30 . CDS 69154 69498 . + 0 ID=Phyra78216;Parent=Phyra78216;rank=8 scaffold_30 . CDS 69582 69975 . + 0 ID=Phyra78216;Parent=Phyra78216;rank=9 scaffold_30 . CDS 70167 70465 . + 0 ID=Phyra78216;Parent=Phyra78216;rank=10 scaffold_30 . CDS 70556 70708 . + 0 ID=Phyra78216;Parent=Phyra78216;rank=11 scaffold_30 . CDS 70789 71130 . + 0 ID=Phyra78216;Parent=Phyra78216;rank=12 scaffold_30 . CDS 71205 71639 . + 0 ID=Phyra78216;Parent=Phyra78216;rank=13 scaffold_30 ensembl protein_coding_gene 61337 63005 . + . ID=Phyra95042;biotype=protein_coding;external_name=C_scaffold_30000005;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 61337 63005 . + . ID=Phyra95042;Parent=Phyra95042;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 61337 61457 . + 0 ID=Phyra95042;Parent=Phyra95042;rank=1 scaffold_30 . exon 61337 61457 . + . ID=Phyra95042.1;Parent=Phyra95042;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 61958 62061 . + 0 ID=Phyra95042;Parent=Phyra95042;rank=2 scaffold_30 . exon 61958 62061 . + . ID=Phyra95042.2;Parent=Phyra95042;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 62161 62502 . + 0 ID=Phyra95042;Parent=Phyra95042;rank=3 scaffold_30 . exon 62161 62502 . + . ID=Phyra95042.3;Parent=Phyra95042;constitutive=1;rank=3 scaffold_30 . CDS 62583 63005 . + 0 ID=Phyra95042;Parent=Phyra95042;rank=4 scaffold_30 . exon 62583 63005 . + . ID=Phyra95042.4;Parent=Phyra95042;constitutive=1;rank=4 scaffold_30 ensembl protein_coding_gene 63115 64749 . + . ID=Phyra95043;biotype=protein_coding;external_name=C_scaffold_30000006;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 63115 64749 . + . ID=Phyra95043;Parent=Phyra95043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 63115 63216 . + 0 ID=Phyra95043;Parent=Phyra95043;rank=1 scaffold_30 . exon 63115 63216 . + . ID=Phyra95043.1;Parent=Phyra95043;constitutive=1;rank=1 scaffold_30 . CDS 63463 63579 . + 0 ID=Phyra95043;Parent=Phyra95043;rank=2 scaffold_30 . exon 63463 63579 . + . ID=Phyra95043.2;Parent=Phyra95043;constitutive=1;rank=2 scaffold_30 . CDS 63682 63834 . + 0 ID=Phyra95043;Parent=Phyra95043;rank=3 scaffold_30 . exon 63682 63834 . + . ID=Phyra95043.3;Parent=Phyra95043;constitutive=1;rank=3 scaffold_30 . CDS 63912 64118 . + 0 ID=Phyra95043;Parent=Phyra95043;rank=4 scaffold_30 . exon 63912 64118 . + . ID=Phyra95043.4;Parent=Phyra95043;constitutive=1;rank=4 scaffold_30 . CDS 64155 64253 . + 0 ID=Phyra95043;Parent=Phyra95043;rank=5 scaffold_30 . exon 64155 64253 . + . ID=Phyra95043.5;Parent=Phyra95043;constitutive=1;rank=5 scaffold_30 . CDS 64324 64749 . + 0 ID=Phyra95043;Parent=Phyra95043;rank=6 scaffold_30 . exon 64324 64749 . + . ID=Phyra95043.6;Parent=Phyra95043;constitutive=1;rank=6 scaffold_30 . exon 69154 69498 . + . ID=Phyra78216.8;Parent=Phyra78216;constitutive=1;rank=8 scaffold_30 . exon 69582 69975 . + . ID=Phyra78216.9;Parent=Phyra78216;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_30 . exon 70167 70465 . + . ID=Phyra78216.10;Parent=Phyra78216;constitutive=1;ensembl_phase=1;rank=10 scaffold_30 . exon 70556 70708 . + . ID=Phyra78216.11;Parent=Phyra78216;constitutive=1;rank=11 scaffold_30 . exon 70789 71130 . + . ID=Phyra78216.12;Parent=Phyra78216;constitutive=1;rank=12 scaffold_30 . exon 71205 71639 . + . ID=Phyra78216.13;Parent=Phyra78216;constitutive=1;rank=13 scaffold_30 ensembl protein_coding_gene 72197 75546 . + . ID=Phyra78217;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000022;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 72197 75546 . + . ID=Phyra78217;Parent=Phyra78217;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 72197 72736 . + 0 ID=Phyra78217;Parent=Phyra78217;rank=1 scaffold_30 . exon 72197 72736 . + . ID=Phyra78217.1;Parent=Phyra78217;constitutive=1;rank=1 scaffold_30 . CDS 72798 73133 . + 0 ID=Phyra78217;Parent=Phyra78217;rank=2 scaffold_30 . exon 72798 73133 . + . ID=Phyra78217.2;Parent=Phyra78217;constitutive=1;rank=2 scaffold_30 . CDS 73204 73548 . + 0 ID=Phyra78217;Parent=Phyra78217;rank=3 scaffold_30 . exon 73204 73548 . + . ID=Phyra78217.3;Parent=Phyra78217;constitutive=1;rank=3 scaffold_30 . CDS 73875 74573 . + 0 ID=Phyra78217;Parent=Phyra78217;rank=4 scaffold_30 . exon 73875 74573 . + . ID=Phyra78217.4;Parent=Phyra78217;constitutive=1;rank=4 scaffold_30 . CDS 74652 74993 . + 0 ID=Phyra78217;Parent=Phyra78217;rank=5 scaffold_30 . exon 74652 74993 . + . ID=Phyra78217.5;Parent=Phyra78217;constitutive=1;rank=5 scaffold_30 . CDS 75076 75546 . + 0 ID=Phyra78217;Parent=Phyra78217;rank=6 scaffold_30 . exon 75076 75546 . + . ID=Phyra78217.6;Parent=Phyra78217;constitutive=1;rank=6 scaffold_30 ensembl protein_coding_gene 75642 78793 . + . ID=Phyra78218;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000023;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 75642 78793 . + . ID=Phyra78218;Parent=Phyra78218;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 75642 76259 . + 0 ID=Phyra78218;Parent=Phyra78218;rank=1 scaffold_30 . exon 75642 76259 . + . ID=Phyra78218.1;Parent=Phyra78218;constitutive=1;rank=1 scaffold_30 . CDS 76324 76668 . + 0 ID=Phyra78218;Parent=Phyra78218;rank=2 scaffold_30 . exon 76324 76668 . + . ID=Phyra78218.2;Parent=Phyra78218;constitutive=1;rank=2 scaffold_30 . CDS 76734 77174 . + 0 ID=Phyra78218;Parent=Phyra78218;rank=3 scaffold_30 . exon 76734 77174 . + . ID=Phyra78218.3;Parent=Phyra78218;constitutive=1;rank=3 scaffold_30 . CDS 77310 77870 . + 0 ID=Phyra78218;Parent=Phyra78218;rank=4 scaffold_30 . exon 77310 77870 . + . ID=Phyra78218.4;Parent=Phyra78218;constitutive=1;rank=4 scaffold_30 . CDS 77946 77955 . + 0 ID=Phyra78218;Parent=Phyra78218;rank=5 scaffold_30 . exon 77946 77955 . + . ID=Phyra78218.5;Parent=Phyra78218;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_30 . CDS 78079 78290 . + 0 ID=Phyra78218;Parent=Phyra78218;rank=6 scaffold_30 . exon 78079 78290 . + . ID=Phyra78218.6;Parent=Phyra78218;constitutive=1;ensembl_phase=1;rank=6 scaffold_30 . CDS 78371 78793 . + 0 ID=Phyra78218;Parent=Phyra78218;rank=7 scaffold_30 . exon 78371 78793 . + . ID=Phyra78218.7;Parent=Phyra78218;constitutive=1;rank=7 scaffold_30 . repeat_region 79294 79343 . ? . description=dust scaffold_30 . repeat_region 79444 79454 . ? . description=dust scaffold_30 . repeat_region 80705 80714 . ? . description=dust scaffold_30 . repeat_region 82144 82159 . ? . description=dust scaffold_30 . repeat_region 82729 82784 . ? . description=dust scaffold_30 . repeat_region 84697 84805 . ? . description=trf scaffold_30 . biological_region 86834 86837 0.999 + . logic_name=eponine scaffold_30 . repeat_region 87170 87185 . ? . description=dust scaffold_30 ensembl protein_coding_gene 79542 80126 . - . ID=Phyra71592;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_30000003;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 79542 80126 . - . ID=Phyra71592;Parent=Phyra71592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 79542 80126 . - 0 ID=Phyra71592;Parent=Phyra71592;rank=1 scaffold_30 . exon 79542 80126 . - . ID=Phyra71592.1;Parent=Phyra71592;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 86192 86762 . - . ID=Phyra78220;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000025;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 86192 86762 . - . ID=Phyra78220;Parent=Phyra78220;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 86192 86483 . - 0 ID=Phyra78220;Parent=Phyra78220;rank=2 scaffold_30 . exon 86192 86483 . - . ID=Phyra78220.2;Parent=Phyra78220;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 86749 86762 . - 0 ID=Phyra78220;Parent=Phyra78220;rank=1 scaffold_30 . exon 86749 86762 . - . ID=Phyra78220.1;Parent=Phyra78220;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . repeat_region 97761 97933 . + . description=Gypsy-1-I_PI-int scaffold_30 ensembl protein_coding_gene 90690 91884 . - . ID=Phyra78221;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000026;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 90690 91884 . - . ID=Phyra78221;Parent=Phyra78221;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 90690 90699 . - 0 ID=Phyra78221;Parent=Phyra78221;rank=5 scaffold_30 . exon 90690 90699 . - . ID=Phyra78221.5;Parent=Phyra78221;constitutive=1;ensembl_phase=2;rank=5 scaffold_30 . CDS 90729 90798 . - 0 ID=Phyra78221;Parent=Phyra78221;rank=4 scaffold_30 . exon 90729 90798 . - . ID=Phyra78221.4;Parent=Phyra78221;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_30 . CDS 90935 91269 . - 0 ID=Phyra78221;Parent=Phyra78221;rank=3 scaffold_30 . exon 90935 91269 . - . ID=Phyra78221.3;Parent=Phyra78221;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 91330 91635 . - 0 ID=Phyra78221;Parent=Phyra78221;rank=2 scaffold_30 . exon 91330 91635 . - . ID=Phyra78221.2;Parent=Phyra78221;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_30 . CDS 91868 91884 . - 0 ID=Phyra78221;Parent=Phyra78221;rank=1 scaffold_30 . exon 91868 91884 . - . ID=Phyra78221.1;Parent=Phyra78221;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 98096 100230 . - . ID=Phyra78222;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000027;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 98096 100230 . - . ID=Phyra78222;Parent=Phyra78222;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 98096 98150 . - 0 ID=Phyra78222;Parent=Phyra78222;rank=3 scaffold_30 . exon 98096 98150 . - . ID=Phyra78222.3;Parent=Phyra78222;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 98274 99119 . - 0 ID=Phyra78222;Parent=Phyra78222;rank=2 scaffold_30 . exon 98274 99119 . - . ID=Phyra78222.2;Parent=Phyra78222;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_30 . CDS 99188 100230 . - 0 ID=Phyra78222;Parent=Phyra78222;rank=1 scaffold_30 . repeat_region 98430 98558 . ? . description=trf scaffold_30 . biological_region 98957 98960 0.999 - . logic_name=eponine scaffold_30 . biological_region 99879 99887 0.999 + . logic_name=eponine scaffold_30 . biological_region 100026 100030 0.999 - . logic_name=eponine scaffold_30 . repeat_region 100829 100878 . ? . description=dust scaffold_30 . repeat_region 100879 102149 . + . description=GypsyPi-1c_I-int scaffold_30 . repeat_region 102526 102575 . ? . description=dust scaffold_30 . biological_region 103152 103157 0.999 + . logic_name=eponine scaffold_30 . biological_region 103338 103340 0.999 - . logic_name=eponine scaffold_30 . repeat_region 103489 103511 . ? . description=trf scaffold_30 . repeat_region 103489 103511 . ? . description=dust scaffold_30 . repeat_region 103530 103579 . ? . description=dust scaffold_30 . repeat_region 103583 103696 . + . description=GypsyPi-1c_I-int scaffold_30 . biological_region 103771 103772 0.999 - . logic_name=eponine scaffold_30 . repeat_region 103945 103966 . ? . description=dust scaffold_30 . repeat_region 106923 107095 . + . description=GypsyPi-1c_I-int scaffold_30 . exon 99188 100230 . - . ID=Phyra78222.1;Parent=Phyra78222;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 103713 105318 . - . ID=Phyra78223;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000028;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 103713 105318 . - . ID=Phyra78223;Parent=Phyra78223;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 103713 103910 . - 0 ID=Phyra78223;Parent=Phyra78223;rank=4 scaffold_30 . exon 103713 103910 . - . ID=Phyra78223.4;Parent=Phyra78223;constitutive=1;rank=4 scaffold_30 . CDS 103981 104342 . - 0 ID=Phyra78223;Parent=Phyra78223;rank=3 scaffold_30 . exon 103981 104342 . - . ID=Phyra78223.3;Parent=Phyra78223;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 104367 104384 . - 0 ID=Phyra78223;Parent=Phyra78223;rank=2 scaffold_30 . exon 104367 104384 . - . ID=Phyra78223.2;Parent=Phyra78223;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 104439 105318 . - 0 ID=Phyra78223;Parent=Phyra78223;rank=1 scaffold_30 . exon 104439 105318 . - . ID=Phyra78223.1;Parent=Phyra78223;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 112035 113619 . - . ID=Phyra78224;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000029;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 112035 113619 . - . ID=Phyra78224;Parent=Phyra78224;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 112035 112054 . - 0 ID=Phyra78224;Parent=Phyra78224;rank=7 scaffold_30 . exon 112035 112054 . - . ID=Phyra78224.7;Parent=Phyra78224;constitutive=1;ensembl_phase=1;rank=7 scaffold_30 . CDS 112097 112233 . - 0 ID=Phyra78224;Parent=Phyra78224;rank=6 scaffold_30 . exon 112097 112233 . - . ID=Phyra78224.6;Parent=Phyra78224;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_30 . CDS 112328 112425 . - 0 ID=Phyra78224;Parent=Phyra78224;rank=5 scaffold_30 . exon 112328 112425 . - . ID=Phyra78224.5;Parent=Phyra78224;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_30 . CDS 112497 112629 . - 0 ID=Phyra78224;Parent=Phyra78224;rank=4 scaffold_30 . exon 112497 112629 . - . ID=Phyra78224.4;Parent=Phyra78224;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 112766 112891 . - 0 ID=Phyra78224;Parent=Phyra78224;rank=3 scaffold_30 . exon 112766 112891 . - . ID=Phyra78224.3;Parent=Phyra78224;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_30 . CDS 112924 113345 . - 0 ID=Phyra78224;Parent=Phyra78224;rank=2 scaffold_30 . exon 112924 113345 . - . ID=Phyra78224.2;Parent=Phyra78224;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 113554 113619 . - 0 ID=Phyra78224;Parent=Phyra78224;rank=1 scaffold_30 . exon 113554 113619 . - . ID=Phyra78224.1;Parent=Phyra78224;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 114113 115291 . - . ID=Phyra78225;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000030;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 114113 115291 . - . ID=Phyra78225;Parent=Phyra78225;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 114113 115291 . - 0 ID=Phyra78225;Parent=Phyra78225;rank=1 scaffold_30 . exon 114113 115291 . - . ID=Phyra78225.1;Parent=Phyra78225;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 116799 118341 . + . ID=Phyra78226;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000031;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 116799 118341 . + . ID=Phyra78226;Parent=Phyra78226;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 116799 117255 . + 0 ID=Phyra78226;Parent=Phyra78226;rank=1 scaffold_30 . exon 116799 117255 . + . ID=Phyra78226.1;Parent=Phyra78226;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 117631 117815 . + 0 ID=Phyra78226;Parent=Phyra78226;rank=2 scaffold_30 . exon 117631 117815 . + . ID=Phyra78226.2;Parent=Phyra78226;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 117910 118341 . + 0 ID=Phyra78226;Parent=Phyra78226;rank=3 scaffold_30 . exon 117910 118341 . + . ID=Phyra78226.3;Parent=Phyra78226;constitutive=1;rank=3 scaffold_30 . biological_region 118824 118827 0.999 - . logic_name=eponine scaffold_30 . biological_region 122575 122579 0.999 - . logic_name=eponine scaffold_30 . repeat_region 123975 123987 . ? . description=dust scaffold_30 . biological_region 124091 124091 0.999 - . logic_name=eponine scaffold_30 . repeat_region 127583 127590 . ? . description=dust scaffold_30 ensembl protein_coding_gene 120976 125468 . + . ID=Phyra78227;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000032;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 120976 125468 . + . ID=Phyra78227;Parent=Phyra78227;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 120976 121503 . + 0 ID=Phyra78227;Parent=Phyra78227;rank=1 scaffold_30 . exon 120976 121503 . + . ID=Phyra78227.1;Parent=Phyra78227;constitutive=1;rank=1 scaffold_30 . CDS 121597 121941 . + 0 ID=Phyra78227;Parent=Phyra78227;rank=2 scaffold_30 . exon 121597 121941 . + . ID=Phyra78227.2;Parent=Phyra78227;constitutive=1;rank=2 scaffold_30 . CDS 122005 122349 . + 0 ID=Phyra78227;Parent=Phyra78227;rank=3 scaffold_30 . exon 122005 122349 . + . ID=Phyra78227.3;Parent=Phyra78227;constitutive=1;rank=3 scaffold_30 . CDS 122454 123041 . + 0 ID=Phyra78227;Parent=Phyra78227;rank=4 scaffold_30 . exon 122454 123041 . + . ID=Phyra78227.4;Parent=Phyra78227;constitutive=1;rank=4 scaffold_30 . CDS 123119 123463 . + 0 ID=Phyra78227;Parent=Phyra78227;rank=5 scaffold_30 . exon 123119 123463 . + . ID=Phyra78227.5;Parent=Phyra78227;constitutive=1;rank=5 scaffold_30 . CDS 123525 123900 . + 0 ID=Phyra78227;Parent=Phyra78227;rank=6 scaffold_30 . exon 123525 123900 . + . ID=Phyra78227.6;Parent=Phyra78227;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_30 . CDS 123996 124555 . + 0 ID=Phyra78227;Parent=Phyra78227;rank=7 scaffold_30 . exon 123996 124555 . + . ID=Phyra78227.7;Parent=Phyra78227;constitutive=1;ensembl_phase=1;rank=7 scaffold_30 . CDS 124619 124963 . + 0 ID=Phyra78227;Parent=Phyra78227;rank=8 scaffold_30 . exon 124619 124963 . + . ID=Phyra78227.8;Parent=Phyra78227;constitutive=1;rank=8 scaffold_30 . CDS 125010 125468 . + 0 ID=Phyra78227;Parent=Phyra78227;rank=9 scaffold_30 . exon 125010 125468 . + . ID=Phyra78227.9;Parent=Phyra78227;constitutive=1;rank=9 scaffold_30 ensembl protein_coding_gene 119059 120108 . + . ID=Phyra95047;biotype=protein_coding;external_name=C_scaffold_30000010;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 119059 120108 . + . ID=Phyra95047;Parent=Phyra95047;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 119059 119202 . + 0 ID=Phyra95047;Parent=Phyra95047;rank=1 scaffold_30 . exon 119059 119202 . + . ID=Phyra95047.1;Parent=Phyra95047;constitutive=1;rank=1 scaffold_30 . CDS 119448 119651 . + 0 ID=Phyra95047;Parent=Phyra95047;rank=2 scaffold_30 . exon 119448 119651 . + . ID=Phyra95047.2;Parent=Phyra95047;constitutive=1;rank=2 scaffold_30 . CDS 119808 120025 . + 0 ID=Phyra95047;Parent=Phyra95047;rank=3 scaffold_30 . exon 119808 120025 . + . ID=Phyra95047.3;Parent=Phyra95047;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_30 . CDS 120084 120108 . + 0 ID=Phyra95047;Parent=Phyra95047;rank=4 scaffold_30 . exon 120084 120108 . + . ID=Phyra95047.4;Parent=Phyra95047;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 ensembl protein_coding_gene 130000 131625 . + . ID=Phyra78228;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000033;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 130000 131625 . + . ID=Phyra78228;Parent=Phyra78228;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 130000 130713 . + 0 ID=Phyra78228;Parent=Phyra78228;rank=1 scaffold_30 . exon 130000 130713 . + . ID=Phyra78228.1;Parent=Phyra78228;constitutive=1;rank=1 scaffold_30 . CDS 130785 131126 . + 0 ID=Phyra78228;Parent=Phyra78228;rank=2 scaffold_30 . exon 130785 131126 . + . ID=Phyra78228.2;Parent=Phyra78228;constitutive=1;rank=2 scaffold_30 . CDS 131194 131625 . + 0 ID=Phyra78228;Parent=Phyra78228;rank=3 scaffold_30 . exon 131194 131625 . + . ID=Phyra78228.3;Parent=Phyra78228;constitutive=1;rank=3 scaffold_30 ensembl protein_coding_gene 131875 134250 . - . ID=Phyra78229;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000034;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 131875 134250 . - . ID=Phyra78229;Parent=Phyra78229;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 131875 134250 . - 0 ID=Phyra78229;Parent=Phyra78229;rank=1 scaffold_30 . exon 131875 134250 . - . ID=Phyra78229.1;Parent=Phyra78229;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 135029 137383 . - . ID=Phyra78230;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000035;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 135029 137383 . - . ID=Phyra78230;Parent=Phyra78230;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 135029 137383 . - 0 ID=Phyra78230;Parent=Phyra78230;rank=1 scaffold_30 . exon 135029 137383 . - . ID=Phyra78230.1;Parent=Phyra78230;constitutive=1;rank=1 scaffold_30 . biological_region 146339 146339 0.999 - . logic_name=eponine scaffold_30 ensembl protein_coding_gene 138021 140462 . - . ID=Phyra78231;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000036;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 138021 140462 . - . ID=Phyra78231;Parent=Phyra78231;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 138021 140462 . - 0 ID=Phyra78231;Parent=Phyra78231;rank=1 scaffold_30 . exon 138021 140462 . - . ID=Phyra78231.1;Parent=Phyra78231;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 141543 143906 . - . ID=Phyra78232;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000037;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 141543 143906 . - . ID=Phyra78232;Parent=Phyra78232;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 141543 143906 . - 0 ID=Phyra78232;Parent=Phyra78232;rank=1 scaffold_30 . exon 141543 143906 . - . ID=Phyra78232.1;Parent=Phyra78232;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 144930 146472 . + . ID=Phyra78233;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000038;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 144930 146472 . + . ID=Phyra78233;Parent=Phyra78233;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 144930 145012 . + 0 ID=Phyra78233;Parent=Phyra78233;rank=1 scaffold_30 . exon 144930 145012 . + . ID=Phyra78233.1;Parent=Phyra78233;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 145068 146472 . + 0 ID=Phyra78233;Parent=Phyra78233;rank=2 scaffold_30 . exon 145068 146472 . + . ID=Phyra78233.2;Parent=Phyra78233;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 ensembl protein_coding_gene 146712 148106 . - . ID=Phyra78234;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000039;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 146712 148106 . - . ID=Phyra78234;Parent=Phyra78234;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 146712 147143 . - 0 ID=Phyra78234;Parent=Phyra78234;rank=3 scaffold_30 . exon 146712 147143 . - . ID=Phyra78234.3;Parent=Phyra78234;constitutive=1;rank=3 scaffold_30 . CDS 147191 147553 . - 0 ID=Phyra78234;Parent=Phyra78234;rank=2 scaffold_30 . exon 147191 147553 . - . ID=Phyra78234.2;Parent=Phyra78234;constitutive=1;rank=2 scaffold_30 . CDS 147615 148106 . - 0 ID=Phyra78234;Parent=Phyra78234;rank=1 scaffold_30 . exon 147615 148106 . - . ID=Phyra78234.1;Parent=Phyra78234;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 151621 152865 . - . ID=Phyra71593;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_30000004;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 151621 152865 . - . ID=Phyra71593;Parent=Phyra71593;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 151621 151818 . - 0 ID=Phyra71593;Parent=Phyra71593;rank=5 scaffold_30 . exon 151621 151818 . - . ID=Phyra71593.5;Parent=Phyra71593;constitutive=1;rank=5 scaffold_30 . CDS 151882 152091 . - 0 ID=Phyra71593;Parent=Phyra71593;rank=4 scaffold_30 . exon 151882 152091 . - . ID=Phyra71593.4;Parent=Phyra71593;constitutive=1;rank=4 scaffold_30 . CDS 152168 152277 . - 0 ID=Phyra71593;Parent=Phyra71593;rank=3 scaffold_30 . exon 152168 152277 . - . ID=Phyra71593.3;Parent=Phyra71593;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 152357 152439 . - 0 ID=Phyra71593;Parent=Phyra71593;rank=2 scaffold_30 . exon 152357 152439 . - . ID=Phyra71593.2;Parent=Phyra71593;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 152501 152865 . - 0 ID=Phyra71593;Parent=Phyra71593;rank=1 scaffold_30 . exon 152501 152865 . - . ID=Phyra71593.1;Parent=Phyra71593;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 148638 149842 . + . ID=Phyra78235;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000040;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 148638 149842 . + . ID=Phyra78235;Parent=Phyra78235;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 148638 149255 . + 0 ID=Phyra78235;Parent=Phyra78235;rank=1 scaffold_30 . exon 148638 149255 . + . ID=Phyra78235.1;Parent=Phyra78235;constitutive=1;rank=1 scaffold_30 . CDS 149323 149634 . + 0 ID=Phyra78235;Parent=Phyra78235;rank=2 scaffold_30 . exon 149323 149634 . + . ID=Phyra78235.2;Parent=Phyra78235;constitutive=1;rank=2 scaffold_30 . CDS 149702 149842 . + 0 ID=Phyra78235;Parent=Phyra78235;rank=3 scaffold_30 . exon 149702 149842 . + . ID=Phyra78235.3;Parent=Phyra78235;constitutive=1;rank=3 scaffold_30 ensembl protein_coding_gene 150007 151193 . - . ID=Phyra78236;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000041;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 150007 151193 . - . ID=Phyra78236;Parent=Phyra78236;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 150007 150164 . - 0 ID=Phyra78236;Parent=Phyra78236;rank=4 scaffold_30 . exon 150007 150164 . - . ID=Phyra78236.4;Parent=Phyra78236;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 150234 150473 . - 0 ID=Phyra78236;Parent=Phyra78236;rank=3 scaffold_30 . exon 150234 150473 . - . ID=Phyra78236.3;Parent=Phyra78236;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 150546 150915 . - 0 ID=Phyra78236;Parent=Phyra78236;rank=2 scaffold_30 . exon 150546 150915 . - . ID=Phyra78236.2;Parent=Phyra78236;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 150995 151192 . - 0 ID=Phyra78236;Parent=Phyra78236;rank=1 scaffold_30 . exon 150995 151193 . - . ID=Phyra78236.1;Parent=Phyra78236;constitutive=1;ensembl_phase=-1;rank=1 scaffold_30 . biological_region 161070 161073 0.999 - . logic_name=eponine scaffold_30 . biological_region 163775 163780 0.999 + . logic_name=eponine scaffold_30 . biological_region 163812 163818 0.999 + . logic_name=eponine scaffold_30 . biological_region 163855 163860 0.999 + . logic_name=eponine scaffold_30 . biological_region 163880 163885 0.999 - . logic_name=eponine scaffold_30 . biological_region 163901 163909 0.999 - . logic_name=eponine scaffold_30 . biological_region 163904 163909 0.999 + . logic_name=eponine scaffold_30 . biological_region 163925 163933 0.999 - . logic_name=eponine scaffold_30 . biological_region 163937 163938 0.999 + . logic_name=eponine scaffold_30 . repeat_region 166872 166907 . ? . description=trf scaffold_30 . repeat_region 167274 167287 . ? . description=dust scaffold_30 ensembl protein_coding_gene 166684 167644 . - . ID=Phyra71594;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_30000005;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 166684 167644 . - . ID=Phyra71594;Parent=Phyra71594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 166684 166780 . - 0 ID=Phyra71594;Parent=Phyra71594;rank=6 scaffold_30 . exon 166684 166780 . - . ID=Phyra71594.6;Parent=Phyra71594;constitutive=1;ensembl_phase=2;rank=6 scaffold_30 . CDS 166821 166915 . - 0 ID=Phyra71594;Parent=Phyra71594;rank=5 scaffold_30 . exon 166821 166915 . - . ID=Phyra71594.5;Parent=Phyra71594;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_30 . CDS 166995 167045 . - 0 ID=Phyra71594;Parent=Phyra71594;rank=4 scaffold_30 . exon 166995 167045 . - . ID=Phyra71594.4;Parent=Phyra71594;constitutive=1;rank=4 scaffold_30 . CDS 167115 167234 . - 0 ID=Phyra71594;Parent=Phyra71594;rank=3 scaffold_30 . exon 167115 167234 . - . ID=Phyra71594.3;Parent=Phyra71594;constitutive=1;rank=3 scaffold_30 . CDS 167292 167520 . - 0 ID=Phyra71594;Parent=Phyra71594;rank=2 scaffold_30 . exon 167292 167520 . - . ID=Phyra71594.2;Parent=Phyra71594;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 167592 167644 . - 0 ID=Phyra71594;Parent=Phyra71594;rank=1 scaffold_30 ensembl protein_coding_gene 159052 161073 . + . ID=Phyra78238;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000043;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 159052 161073 . + . ID=Phyra78238;Parent=Phyra78238;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 159052 160638 . + 0 ID=Phyra78238;Parent=Phyra78238;rank=1 scaffold_30 . exon 159052 160638 . + . ID=Phyra78238.1;Parent=Phyra78238;constitutive=1;rank=1 scaffold_30 . CDS 160757 160886 . + 0 ID=Phyra78238;Parent=Phyra78238;rank=2 scaffold_30 . exon 160757 160886 . + . ID=Phyra78238.2;Parent=Phyra78238;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 160958 161073 . + 0 ID=Phyra78238;Parent=Phyra78238;rank=3 scaffold_30 . exon 160958 161073 . + . ID=Phyra78238.3;Parent=Phyra78238;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 ensembl protein_coding_gene 163726 165546 . + . ID=Phyra78239;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000044;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 163726 165546 . + . ID=Phyra78239;Parent=Phyra78239;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 163726 164365 . + 0 ID=Phyra78239;Parent=Phyra78239;rank=1 scaffold_30 . exon 163726 164365 . + . ID=Phyra78239.1;Parent=Phyra78239;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 164421 164640 . + 0 ID=Phyra78239;Parent=Phyra78239;rank=2 scaffold_30 . exon 164421 164640 . + . ID=Phyra78239.2;Parent=Phyra78239;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_30 . CDS 164708 164774 . + 0 ID=Phyra78239;Parent=Phyra78239;rank=3 scaffold_30 . exon 164708 164774 . + . ID=Phyra78239.3;Parent=Phyra78239;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 165027 165091 . + 0 ID=Phyra78239;Parent=Phyra78239;rank=4 scaffold_30 . exon 165027 165091 . + . ID=Phyra78239.4;Parent=Phyra78239;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_30 . CDS 165170 165331 . + 0 ID=Phyra78239;Parent=Phyra78239;rank=5 scaffold_30 . exon 165170 165331 . + . ID=Phyra78239.5;Parent=Phyra78239;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_30 . CDS 165396 165546 . + 0 ID=Phyra78239;Parent=Phyra78239;rank=6 scaffold_30 . exon 165396 165546 . + . ID=Phyra78239.6;Parent=Phyra78239;constitutive=1;ensembl_phase=2;rank=6 scaffold_30 . exon 167592 167644 . - . ID=Phyra71594.1;Parent=Phyra71594;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 172405 173398 . - . ID=Phyra71595;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_30000006;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 172405 173398 . - . ID=Phyra71595;Parent=Phyra71595;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 172405 172588 . - 0 ID=Phyra71595;Parent=Phyra71595;rank=4 scaffold_30 . exon 172405 172588 . - . ID=Phyra71595.4;Parent=Phyra71595;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 172665 172777 . - 0 ID=Phyra71595;Parent=Phyra71595;rank=3 scaffold_30 . exon 172665 172777 . - . ID=Phyra71595.3;Parent=Phyra71595;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_30 . CDS 172847 173222 . - 0 ID=Phyra71595;Parent=Phyra71595;rank=2 scaffold_30 . exon 172847 173222 . - . ID=Phyra71595.2;Parent=Phyra71595;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 173295 173398 . - 0 ID=Phyra71595;Parent=Phyra71595;rank=1 scaffold_30 . exon 173295 173398 . - . ID=Phyra71595.1;Parent=Phyra71595;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 167873 169753 . - . ID=Phyra78241;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000046;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 167873 169753 . - . ID=Phyra78241;Parent=Phyra78241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 167873 169753 . - 0 ID=Phyra78241;Parent=Phyra78241;rank=1 scaffold_30 . exon 167873 169753 . - . ID=Phyra78241.1;Parent=Phyra78241;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 171346 171861 . + . ID=Phyra78242;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000047;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 171346 171861 . + . ID=Phyra78242;Parent=Phyra78242;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 171346 171861 . + 0 ID=Phyra78242;Parent=Phyra78242;rank=1 scaffold_30 . exon 171346 171861 . + . ID=Phyra78242.1;Parent=Phyra78242;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 175861 177470 . + . ID=Phyra78244;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000049;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 175861 177470 . + . ID=Phyra78244;Parent=Phyra78244;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 175861 176615 . + 0 ID=Phyra78244;Parent=Phyra78244;rank=1 scaffold_30 . exon 175861 176615 . + . ID=Phyra78244.1;Parent=Phyra78244;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 177047 177470 . + 0 ID=Phyra78244;Parent=Phyra78244;rank=2 scaffold_30 . exon 177047 177470 . + . ID=Phyra78244.2;Parent=Phyra78244;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . repeat_region 177528 177535 . ? . description=dust scaffold_30 . repeat_region 180145 180194 . ? . description=dust scaffold_30 . repeat_region 181331 181380 . ? . description=dust scaffold_30 . repeat_region 182292 182375 . ? . description=dust scaffold_30 . repeat_region 183511 183560 . ? . description=dust scaffold_30 . repeat_region 183973 184027 . ? . description=dust scaffold_30 ensembl protein_coding_gene 177605 178534 . - . ID=Phyra78245;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000050;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 177605 178534 . - . ID=Phyra78245;Parent=Phyra78245;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 177605 178534 . - 0 ID=Phyra78245;Parent=Phyra78245;rank=1 scaffold_30 . exon 177605 178534 . - . ID=Phyra78245.1;Parent=Phyra78245;constitutive=1;rank=1 scaffold_30 . repeat_region 188835 188871 . ? . description=trf scaffold_30 . repeat_region 194544 194639 . ? . description=trf scaffold_30 . repeat_region 197047 197054 . ? . description=dust scaffold_30 . repeat_region 197676 197691 . ? . description=dust scaffold_30 . repeat_region 204009 204018 . ? . description=dust scaffold_30 . repeat_region 204081 204088 . ? . description=dust scaffold_30 . repeat_region 204565 204614 . ? . description=dust scaffold_30 . repeat_region 206748 206755 . ? . description=dust scaffold_30 . repeat_region 207288 207387 . - . description=Gypsy-1-I_PI-int scaffold_30 . repeat_region 209230 209320 . ? . description=trf scaffold_30 . biological_region 213935 213935 0.999 - . logic_name=eponine scaffold_30 . repeat_region 215269 215297 . ? . description=trf scaffold_30 ensembl pseudogene 216182 223144 . - . ID=Phyra46952;biotype=pseudogene;external_name=gwEuk.30.4.1;logic_name=jgi_phyra1 scaffold_30 ensembl pseudogene 216182 223144 . - . ID=Phyra46952;Parent=Phyra46952;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_30 . exon 216182 218306 . - . ID=Phyra46952.14;Parent=Phyra46952;constitutive=1;ensembl_phase=2;rank=14 scaffold_30 ensembl protein_coding_gene 207981 208472 . - . ID=Phyra78246;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000051;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 207981 208472 . - . ID=Phyra78246;Parent=Phyra78246;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 207981 208472 . - 0 ID=Phyra78246;Parent=Phyra78246;rank=1 scaffold_30 . exon 207981 208472 . - . ID=Phyra78246.1;Parent=Phyra78246;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 212340 213326 . - . ID=Phyra78247;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000052;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 212340 213326 . - . ID=Phyra78247;Parent=Phyra78247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 212340 212794 . - 0 ID=Phyra78247;Parent=Phyra78247;rank=3 scaffold_30 . exon 212340 212794 . - . ID=Phyra78247.3;Parent=Phyra78247;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 212875 213032 . - 0 ID=Phyra78247;Parent=Phyra78247;rank=2 scaffold_30 . exon 212875 213032 . - . ID=Phyra78247.2;Parent=Phyra78247;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 213100 213326 . - 0 ID=Phyra78247;Parent=Phyra78247;rank=1 scaffold_30 . exon 213100 213326 . - . ID=Phyra78247.1;Parent=Phyra78247;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 215101 216007 . + . ID=Phyra78248;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000053;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 215101 216007 . + . ID=Phyra78248;Parent=Phyra78248;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 215101 215896 . + 0 ID=Phyra78248;Parent=Phyra78248;rank=1 scaffold_30 . exon 215101 215896 . + . ID=Phyra78248.1;Parent=Phyra78248;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 216003 216007 . + 0 ID=Phyra78248;Parent=Phyra78248;rank=2 scaffold_30 . exon 216003 216007 . + . ID=Phyra78248.2;Parent=Phyra78248;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . exon 218446 218641 . - . ID=Phyra46952.13;Parent=Phyra46952;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=13 scaffold_30 . exon 218714 219031 . - . ID=Phyra46952.12;Parent=Phyra46952;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_30 . exon 219301 219385 . - . ID=Phyra46952.11;Parent=Phyra46952;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_30 . exon 219471 219690 . - . ID=Phyra46952.10;Parent=Phyra46952;constitutive=1;ensembl_phase=2;rank=10 scaffold_30 . exon 219782 219957 . - . ID=Phyra46952.9;Parent=Phyra46952;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_30 . exon 220052 220234 . - . ID=Phyra46952.8;Parent=Phyra46952;constitutive=1;rank=8 scaffold_30 . exon 220304 220557 . - . ID=Phyra46952.7;Parent=Phyra46952;constitutive=1;ensembl_phase=1;rank=7 scaffold_30 . exon 220634 220932 . - . ID=Phyra46952.6;Parent=Phyra46952;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_30 . exon 221019 222341 . - . ID=Phyra46952.5;Parent=Phyra46952;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_30 . exon 222397 222499 . - . ID=Phyra46952.4;Parent=Phyra46952;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_30 . exon 222574 222661 . - . ID=Phyra46952.3;Parent=Phyra46952;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . exon 222734 222845 . - . ID=Phyra46952.2;Parent=Phyra46952;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . exon 222912 223144 . - . ID=Phyra46952.1;Parent=Phyra46952;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 225841 228408 . + . ID=Phyra78252;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000057;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 225841 228408 . + . ID=Phyra78252;Parent=Phyra78252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 225841 228408 . + 0 ID=Phyra78252;Parent=Phyra78252;rank=1 scaffold_30 . exon 225841 228408 . + . ID=Phyra78252.1;Parent=Phyra78252;constitutive=1;rank=1 scaffold_30 . biological_region 226710 226714 0.999 - . logic_name=eponine scaffold_30 . repeat_region 228547 228554 . ? . description=dust scaffold_30 . biological_region 229610 229612 0.999 + . logic_name=eponine scaffold_30 . biological_region 230918 230919 0.999 - . logic_name=eponine scaffold_30 . biological_region 232626 232631 0.999 + . logic_name=eponine scaffold_30 . biological_region 234392 234395 0.999 - . logic_name=eponine scaffold_30 . biological_region 235487 235493 0.999 + . logic_name=eponine scaffold_30 . biological_region 235510 235510 0.999 + . logic_name=eponine scaffold_30 . biological_region 236388 236393 0.999 - . logic_name=eponine scaffold_30 ensembl protein_coding_gene 228645 231146 . - . ID=Phyra78253;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000058;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 228645 231146 . - . ID=Phyra78253;Parent=Phyra78253;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 228645 231146 . - 0 ID=Phyra78253;Parent=Phyra78253;rank=1 scaffold_30 . exon 228645 231146 . - . ID=Phyra78253.1;Parent=Phyra78253;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 231375 233069 . + . ID=Phyra78254;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000059;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 231375 233069 . + . ID=Phyra78254;Parent=Phyra78254;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 231375 233069 . + 0 ID=Phyra78254;Parent=Phyra78254;rank=1 scaffold_30 . exon 231375 233069 . + . ID=Phyra78254.1;Parent=Phyra78254;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 233227 235236 . - . ID=Phyra78255;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000060;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 233227 235236 . - . ID=Phyra78255;Parent=Phyra78255;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 233227 233231 . - 0 ID=Phyra78255;Parent=Phyra78255;rank=3 scaffold_30 . exon 233227 233231 . - . ID=Phyra78255.3;Parent=Phyra78255;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 233297 234482 . - 0 ID=Phyra78255;Parent=Phyra78255;rank=2 scaffold_30 . exon 233297 234482 . - . ID=Phyra78255.2;Parent=Phyra78255;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 234670 235236 . - 0 ID=Phyra78255;Parent=Phyra78255;rank=1 scaffold_30 . exon 234670 235236 . - . ID=Phyra78255.1;Parent=Phyra78255;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 235410 236819 . + . ID=Phyra78256;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000061;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 235410 236819 . + . ID=Phyra78256;Parent=Phyra78256;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 235410 236819 . + 0 ID=Phyra78256;Parent=Phyra78256;rank=1 scaffold_30 . exon 235410 236819 . + . ID=Phyra78256.1;Parent=Phyra78256;constitutive=1;rank=1 scaffold_30 . repeat_region 237900 237920 . ? . description=trf scaffold_30 ensembl protein_coding_gene 237153 241370 . + . ID=Phyra78257;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000062;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 237153 241370 . + . ID=Phyra78257;Parent=Phyra78257;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 237153 238047 . + 0 ID=Phyra78257;Parent=Phyra78257;rank=1 scaffold_30 . exon 237153 238047 . + . ID=Phyra78257.1;Parent=Phyra78257;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 238142 238227 . + 0 ID=Phyra78257;Parent=Phyra78257;rank=2 scaffold_30 . exon 238142 238227 . + . ID=Phyra78257.2;Parent=Phyra78257;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 238293 241370 . + 0 ID=Phyra78257;Parent=Phyra78257;rank=3 scaffold_30 . exon 238293 241370 . + . ID=Phyra78257.3;Parent=Phyra78257;constitutive=1;rank=3 scaffold_30 ensembl protein_coding_gene 242399 244531 . - . ID=Phyra78258;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000063;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 242399 244531 . - . ID=Phyra78258;Parent=Phyra78258;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 242399 242796 . - 0 ID=Phyra78258;Parent=Phyra78258;rank=9 scaffold_30 . exon 242399 242796 . - . ID=Phyra78258.9;Parent=Phyra78258;constitutive=1;ensembl_phase=1;rank=9 scaffold_30 . CDS 242859 243045 . - 0 ID=Phyra78258;Parent=Phyra78258;rank=8 scaffold_30 . exon 242859 243045 . - . ID=Phyra78258.8;Parent=Phyra78258;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_30 . CDS 243149 243256 . - 0 ID=Phyra78258;Parent=Phyra78258;rank=7 scaffold_30 . exon 243149 243256 . - . ID=Phyra78258.7;Parent=Phyra78258;constitutive=1;rank=7 scaffold_30 . CDS 243324 243422 . - 0 ID=Phyra78258;Parent=Phyra78258;rank=6 scaffold_30 . exon 243324 243422 . - . ID=Phyra78258.6;Parent=Phyra78258;constitutive=1;rank=6 scaffold_30 . CDS 243492 243569 . - 0 ID=Phyra78258;Parent=Phyra78258;rank=5 scaffold_30 . exon 243492 243569 . - . ID=Phyra78258.5;Parent=Phyra78258;constitutive=1;rank=5 scaffold_30 . CDS 243599 243628 . - 0 ID=Phyra78258;Parent=Phyra78258;rank=4 scaffold_30 . exon 243599 243628 . - . ID=Phyra78258.4;Parent=Phyra78258;constitutive=1;rank=4 scaffold_30 . CDS 243669 243755 . - 0 ID=Phyra78258;Parent=Phyra78258;rank=3 scaffold_30 . exon 243669 243755 . - . ID=Phyra78258.3;Parent=Phyra78258;constitutive=1;rank=3 scaffold_30 . CDS 243826 243924 . - 0 ID=Phyra78258;Parent=Phyra78258;rank=2 scaffold_30 . exon 243826 243924 . - . ID=Phyra78258.2;Parent=Phyra78258;constitutive=1;rank=2 scaffold_30 . CDS 243992 244531 . - 0 ID=Phyra78258;Parent=Phyra78258;rank=1 scaffold_30 . exon 243992 244531 . - . ID=Phyra78258.1;Parent=Phyra78258;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 245001 245551 . + . ID=Phyra78259;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000064;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 245001 245551 . + . ID=Phyra78259;Parent=Phyra78259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 245001 245063 . + 0 ID=Phyra78259;Parent=Phyra78259;rank=1 scaffold_30 . exon 245001 245063 . + . ID=Phyra78259.1;Parent=Phyra78259;constitutive=1;rank=1 scaffold_30 . CDS 245103 245162 . + 0 ID=Phyra78259;Parent=Phyra78259;rank=2 scaffold_30 . exon 245103 245162 . + . ID=Phyra78259.2;Parent=Phyra78259;constitutive=1;rank=2 scaffold_30 . CDS 245228 245551 . + 0 ID=Phyra78259;Parent=Phyra78259;rank=3 scaffold_30 . exon 245228 245551 . + . ID=Phyra78259.3;Parent=Phyra78259;constitutive=1;rank=3 scaffold_30 ensembl protein_coding_gene 245907 247237 . - . ID=Phyra78260;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000065;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 245907 247237 . - . ID=Phyra78260;Parent=Phyra78260;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 245907 245995 . - 0 ID=Phyra78260;Parent=Phyra78260;rank=5 scaffold_30 . exon 245907 245995 . - . ID=Phyra78260.5;Parent=Phyra78260;constitutive=1;ensembl_phase=1;rank=5 scaffold_30 . CDS 246127 246598 . - 0 ID=Phyra78260;Parent=Phyra78260;rank=4 scaffold_30 . exon 246127 246598 . - . ID=Phyra78260.4;Parent=Phyra78260;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_30 . CDS 246654 246826 . - 0 ID=Phyra78260;Parent=Phyra78260;rank=3 scaffold_30 . CDS 246898 247027 . - 0 ID=Phyra78260;Parent=Phyra78260;rank=2 scaffold_30 . CDS 247091 247237 . - 0 ID=Phyra78260;Parent=Phyra78260;rank=1 scaffold_30 . biological_region 247638 247643 0.999 - . logic_name=eponine scaffold_30 . biological_region 252284 252289 0.999 - . logic_name=eponine scaffold_30 . biological_region 252307 252309 0.999 - . logic_name=eponine scaffold_30 . biological_region 252356 252357 0.999 - . logic_name=eponine scaffold_30 . biological_region 253318 253324 0.999 + . logic_name=eponine scaffold_30 . biological_region 253918 253921 0.999 - . logic_name=eponine scaffold_30 ensembl protein_coding_gene 254439 255727 . + . ID=Phyra46959;biotype=protein_coding;external_name=gwEuk.30.11.1;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 254439 255727 . + . ID=Phyra46959;Parent=Phyra46959;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 254439 254480 . + 0 ID=Phyra46959;Parent=Phyra46959;rank=1 scaffold_30 . exon 254439 254480 . + . ID=Phyra46959.1;Parent=Phyra46959;constitutive=1;rank=1 scaffold_30 . CDS 254587 254695 . + 0 ID=Phyra46959;Parent=Phyra46959;rank=2 scaffold_30 . exon 254587 254695 . + . ID=Phyra46959.2;Parent=Phyra46959;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 254763 254844 . + 0 ID=Phyra46959;Parent=Phyra46959;rank=3 scaffold_30 . exon 254763 254844 . + . ID=Phyra46959.3;Parent=Phyra46959;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_30 . CDS 254904 254986 . + 0 ID=Phyra46959;Parent=Phyra46959;rank=4 scaffold_30 . exon 254904 254986 . + . ID=Phyra46959.4;Parent=Phyra46959;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 255051 255142 . + 0 ID=Phyra46959;Parent=Phyra46959;rank=5 scaffold_30 . exon 255051 255142 . + . ID=Phyra46959.5;Parent=Phyra46959;constitutive=1;ensembl_phase=1;rank=5 scaffold_30 . CDS 255211 255350 . + 0 ID=Phyra46959;Parent=Phyra46959;rank=6 scaffold_30 . exon 255211 255350 . + . ID=Phyra46959.6;Parent=Phyra46959;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_30 . CDS 255434 255527 . + 0 ID=Phyra46959;Parent=Phyra46959;rank=7 scaffold_30 . exon 255434 255527 . + . ID=Phyra46959.7;Parent=Phyra46959;constitutive=1;ensembl_phase=2;rank=7 scaffold_30 . CDS 255614 255727 . + 0 ID=Phyra46959;Parent=Phyra46959;rank=8 scaffold_30 . exon 255614 255727 . + . ID=Phyra46959.8;Parent=Phyra46959;constitutive=1;rank=8 scaffold_30 . exon 246654 246826 . - . ID=Phyra78260.3;Parent=Phyra78260;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 . exon 246898 247027 . - . ID=Phyra78260.2;Parent=Phyra78260;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . exon 247091 247237 . - . ID=Phyra78260.1;Parent=Phyra78260;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 247393 248069 . + . ID=Phyra78261;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000066;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 247393 248069 . + . ID=Phyra78261;Parent=Phyra78261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 247393 247616 . + 0 ID=Phyra78261;Parent=Phyra78261;rank=1 scaffold_30 . exon 247393 247616 . + . ID=Phyra78261.1;Parent=Phyra78261;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 247674 247898 . + 0 ID=Phyra78261;Parent=Phyra78261;rank=2 scaffold_30 . exon 247674 247898 . + . ID=Phyra78261.2;Parent=Phyra78261;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_30 . CDS 248021 248069 . + 0 ID=Phyra78261;Parent=Phyra78261;rank=3 scaffold_30 . exon 248021 248069 . + . ID=Phyra78261.3;Parent=Phyra78261;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 ensembl protein_coding_gene 252118 254112 . + . ID=Phyra78262;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000067;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 252118 254112 . + . ID=Phyra78262;Parent=Phyra78262;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 252118 254112 . + 0 ID=Phyra78262;Parent=Phyra78262;rank=1 scaffold_30 . exon 252118 254112 . + . ID=Phyra78262.1;Parent=Phyra78262;constitutive=1;rank=1 scaffold_30 . repeat_region 258249 258256 . ? . description=dust scaffold_30 . repeat_region 260722 260740 . ? . description=dust scaffold_30 . repeat_region 265066 265073 . ? . description=dust scaffold_30 ensembl protein_coding_gene 258801 260605 . + . ID=Phyra78264;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000069;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 258801 260605 . + . ID=Phyra78264;Parent=Phyra78264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 258801 259390 . + 0 ID=Phyra78264;Parent=Phyra78264;rank=1 scaffold_30 . exon 258801 259390 . + . ID=Phyra78264.1;Parent=Phyra78264;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 259531 259686 . + 0 ID=Phyra78264;Parent=Phyra78264;rank=2 scaffold_30 . exon 259531 259686 . + . ID=Phyra78264.2;Parent=Phyra78264;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_30 . CDS 259736 259760 . + 0 ID=Phyra78264;Parent=Phyra78264;rank=3 scaffold_30 . exon 259736 259760 . + . ID=Phyra78264.3;Parent=Phyra78264;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 259829 260206 . + 0 ID=Phyra78264;Parent=Phyra78264;rank=4 scaffold_30 . exon 259829 260206 . + . ID=Phyra78264.4;Parent=Phyra78264;constitutive=1;rank=4 scaffold_30 . CDS 260278 260306 . + 0 ID=Phyra78264;Parent=Phyra78264;rank=5 scaffold_30 . exon 260278 260306 . + . ID=Phyra78264.5;Parent=Phyra78264;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_30 . CDS 260369 260462 . + 0 ID=Phyra78264;Parent=Phyra78264;rank=6 scaffold_30 . exon 260369 260462 . + . ID=Phyra78264.6;Parent=Phyra78264;constitutive=1;ensembl_phase=2;rank=6 scaffold_30 . CDS 260516 260605 . + 0 ID=Phyra78264;Parent=Phyra78264;rank=7 scaffold_30 . exon 260516 260605 . + . ID=Phyra78264.7;Parent=Phyra78264;constitutive=1;rank=7 scaffold_30 ensembl protein_coding_gene 260759 262510 . + . ID=Phyra78265;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000070;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 260759 262510 . + . ID=Phyra78265;Parent=Phyra78265;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 260759 262510 . + 0 ID=Phyra78265;Parent=Phyra78265;rank=1 scaffold_30 . exon 260759 262510 . + . ID=Phyra78265.1;Parent=Phyra78265;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 262727 264651 . - . ID=Phyra78266;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000071;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 262727 264651 . - . ID=Phyra78266;Parent=Phyra78266;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 262727 262745 . - 0 ID=Phyra78266;Parent=Phyra78266;rank=2 scaffold_30 . exon 262727 262745 . - . ID=Phyra78266.2;Parent=Phyra78266;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 262811 264651 . - 0 ID=Phyra78266;Parent=Phyra78266;rank=1 scaffold_30 . exon 262811 264651 . - . ID=Phyra78266.1;Parent=Phyra78266;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 265599 266234 . + . ID=Phyra78267;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000072;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 265599 266234 . + . ID=Phyra78267;Parent=Phyra78267;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 265599 266234 . + 0 ID=Phyra78267;Parent=Phyra78267;rank=1 scaffold_30 . exon 265599 266234 . + . ID=Phyra78267.1;Parent=Phyra78267;constitutive=1;rank=1 scaffold_30 . biological_region 272012 272012 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 266761 270443 . - . ID=Phyra78268;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000073;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 266761 270443 . - . ID=Phyra78268;Parent=Phyra78268;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 266761 266776 . - 0 ID=Phyra78268;Parent=Phyra78268;rank=4 scaffold_30 . exon 266761 266776 . - . ID=Phyra78268.4;Parent=Phyra78268;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 266809 269120 . - 0 ID=Phyra78268;Parent=Phyra78268;rank=3 scaffold_30 . exon 266809 269120 . - . ID=Phyra78268.3;Parent=Phyra78268;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_30 . CDS 269179 269481 . - 0 ID=Phyra78268;Parent=Phyra78268;rank=2 scaffold_30 . exon 269179 269481 . - . ID=Phyra78268.2;Parent=Phyra78268;constitutive=1;rank=2 scaffold_30 . CDS 269550 270443 . - 0 ID=Phyra78268;Parent=Phyra78268;rank=1 scaffold_30 . exon 269550 270443 . - . ID=Phyra78268.1;Parent=Phyra78268;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 270583 271493 . - . ID=Phyra78269;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000074;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 270583 271493 . - . ID=Phyra78269;Parent=Phyra78269;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 270583 270950 . - 0 ID=Phyra78269;Parent=Phyra78269;rank=4 scaffold_30 . exon 270583 270950 . - . ID=Phyra78269.4;Parent=Phyra78269;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 271038 271139 . - 0 ID=Phyra78269;Parent=Phyra78269;rank=3 scaffold_30 . exon 271038 271139 . - . ID=Phyra78269.3;Parent=Phyra78269;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 271211 271375 . - 0 ID=Phyra78269;Parent=Phyra78269;rank=2 scaffold_30 . exon 271211 271375 . - . ID=Phyra78269.2;Parent=Phyra78269;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 271457 271493 . - 0 ID=Phyra78269;Parent=Phyra78269;rank=1 scaffold_30 . exon 271457 271493 . - . ID=Phyra78269.1;Parent=Phyra78269;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 273145 275583 . - . ID=Phyra78271;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000076;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 273145 275583 . - . ID=Phyra78271;Parent=Phyra78271;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 273145 273151 . - 0 ID=Phyra78271;Parent=Phyra78271;rank=6 scaffold_30 . exon 273145 273151 . - . ID=Phyra78271.6;Parent=Phyra78271;constitutive=1;ensembl_phase=2;rank=6 scaffold_30 . CDS 273188 273372 . - 0 ID=Phyra78271;Parent=Phyra78271;rank=5 scaffold_30 . exon 273188 273372 . - . ID=Phyra78271.5;Parent=Phyra78271;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_30 . CDS 273431 274765 . - 0 ID=Phyra78271;Parent=Phyra78271;rank=4 scaffold_30 . exon 273431 274765 . - . ID=Phyra78271.4;Parent=Phyra78271;constitutive=1;rank=4 scaffold_30 . CDS 274841 274898 . - 0 ID=Phyra78271;Parent=Phyra78271;rank=3 scaffold_30 . exon 274841 274898 . - . ID=Phyra78271.3;Parent=Phyra78271;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 274980 275110 . - 0 ID=Phyra78271;Parent=Phyra78271;rank=2 scaffold_30 . exon 274980 275110 . - . ID=Phyra78271.2;Parent=Phyra78271;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 275383 275583 . - 0 ID=Phyra78271;Parent=Phyra78271;rank=1 scaffold_30 . exon 275383 275583 . - . ID=Phyra78271.1;Parent=Phyra78271;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 271719 272288 . + . ID=Phyra95057;biotype=protein_coding;external_name=C_scaffold_30000020;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 271719 272288 . + . ID=Phyra95057;Parent=Phyra95057;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 271719 272288 . + 0 ID=Phyra95057;Parent=Phyra95057;rank=1 scaffold_30 . exon 271719 272288 . + . ID=Phyra95057.1;Parent=Phyra95057;constitutive=1;rank=1 scaffold_30 . repeat_region 279101 279108 . ? . description=dust scaffold_30 ensembl protein_coding_gene 276194 289696 . + . ID=Phyra46973;biotype=protein_coding;external_name=gwEuk.30.25.1;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 276194 289696 . + . ID=Phyra46973;Parent=Phyra46973;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 276194 278957 . + 0 ID=Phyra46973;Parent=Phyra46973;rank=1 scaffold_30 . exon 276194 278957 . + . ID=Phyra46973.1;Parent=Phyra46973;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 279096 289696 . + 0 ID=Phyra46973;Parent=Phyra46973;rank=2 scaffold_30 . exon 279096 289696 . + . ID=Phyra46973.2;Parent=Phyra46973;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . biological_region 290799 290801 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 290044 292234 . - . ID=Phyra78276;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000081;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 290044 292234 . - . ID=Phyra78276;Parent=Phyra78276;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 290044 292234 . - 0 ID=Phyra78276;Parent=Phyra78276;rank=1 scaffold_30 . exon 290044 292234 . - . ID=Phyra78276.1;Parent=Phyra78276;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 292759 297359 . + . ID=Phyra78277;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000082;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 292759 297359 . + . ID=Phyra78277;Parent=Phyra78277;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 292759 294459 . + 0 ID=Phyra78277;Parent=Phyra78277;rank=1 scaffold_30 . exon 292759 294459 . + . ID=Phyra78277.1;Parent=Phyra78277;constitutive=1;rank=1 scaffold_30 . CDS 294734 294778 . + 0 ID=Phyra78277;Parent=Phyra78277;rank=2 scaffold_30 . exon 294734 294778 . + . ID=Phyra78277.2;Parent=Phyra78277;constitutive=1;rank=2 scaffold_30 . CDS 295143 297359 . + 0 ID=Phyra78277;Parent=Phyra78277;rank=3 scaffold_30 . exon 295143 297359 . + . ID=Phyra78277.3;Parent=Phyra78277;constitutive=1;rank=3 scaffold_30 . repeat_region 304740 304751 . ? . description=dust scaffold_30 ensembl protein_coding_gene 297670 307650 . - . ID=Phyra95064;biotype=protein_coding;external_name=C_scaffold_30000027;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 297670 307650 . - . ID=Phyra95064;Parent=Phyra95064;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 297670 298384 . - 0 ID=Phyra95064;Parent=Phyra95064;rank=16 scaffold_30 . exon 297670 298384 . - . ID=Phyra95064.16;Parent=Phyra95064;constitutive=1;ensembl_phase=2;rank=16 scaffold_30 . CDS 298412 299925 . - 0 ID=Phyra95064;Parent=Phyra95064;rank=15 scaffold_30 . exon 298412 299925 . - . ID=Phyra95064.15;Parent=Phyra95064;constitutive=1;ensembl_end_phase=2;rank=15 scaffold_30 . CDS 300037 300787 . - 0 ID=Phyra95064;Parent=Phyra95064;rank=14 scaffold_30 . exon 300037 300787 . - . ID=Phyra95064.14;Parent=Phyra95064;constitutive=1;ensembl_phase=2;rank=14 scaffold_30 . CDS 300853 300964 . - 0 ID=Phyra95064;Parent=Phyra95064;rank=13 scaffold_30 . exon 300853 300964 . - . ID=Phyra95064.13;Parent=Phyra95064;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=13 scaffold_30 . CDS 301039 301087 . - 0 ID=Phyra95064;Parent=Phyra95064;rank=12 scaffold_30 . exon 301039 301087 . - . ID=Phyra95064.12;Parent=Phyra95064;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_30 . CDS 301138 301434 . - 0 ID=Phyra95064;Parent=Phyra95064;rank=11 scaffold_30 . exon 301138 301434 . - . ID=Phyra95064.11;Parent=Phyra95064;constitutive=1;rank=11 scaffold_30 . CDS 301736 301865 . - 0 ID=Phyra95064;Parent=Phyra95064;rank=10 scaffold_30 . exon 301736 301865 . - . ID=Phyra95064.10;Parent=Phyra95064;constitutive=1;ensembl_phase=2;rank=10 scaffold_30 . CDS 301983 302203 . - 0 ID=Phyra95064;Parent=Phyra95064;rank=9 scaffold_30 . exon 301983 302203 . - . ID=Phyra95064.9;Parent=Phyra95064;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_30 . CDS 302381 302932 . - 0 ID=Phyra95064;Parent=Phyra95064;rank=8 scaffold_30 . exon 302381 302932 . - . ID=Phyra95064.8;Parent=Phyra95064;constitutive=1;rank=8 scaffold_30 . CDS 302987 303132 . - 0 ID=Phyra95064;Parent=Phyra95064;rank=7 scaffold_30 . exon 302987 303132 . - . ID=Phyra95064.7;Parent=Phyra95064;constitutive=1;ensembl_phase=1;rank=7 scaffold_30 . CDS 303199 303749 . - 0 ID=Phyra95064;Parent=Phyra95064;rank=6 scaffold_30 . exon 303199 303749 . - . ID=Phyra95064.6;Parent=Phyra95064;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_30 . CDS 303815 304719 . - 0 ID=Phyra95064;Parent=Phyra95064;rank=5 scaffold_30 . exon 303815 304719 . - . ID=Phyra95064.5;Parent=Phyra95064;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_30 . CDS 304808 305658 . - 0 ID=Phyra95064;Parent=Phyra95064;rank=4 scaffold_30 . exon 304808 305658 . - . ID=Phyra95064.4;Parent=Phyra95064;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 306087 306257 . - 0 ID=Phyra95064;Parent=Phyra95064;rank=3 scaffold_30 . CDS 306408 306614 . - 0 ID=Phyra95064;Parent=Phyra95064;rank=2 scaffold_30 . CDS 306999 307650 . - 0 ID=Phyra95064;Parent=Phyra95064;rank=1 scaffold_30 . repeat_region 311785 311809 . ? . description=trf scaffold_30 . repeat_region 313333 313362 . ? . description=trf scaffold_30 ensembl protein_coding_gene 311581 311981 . + . ID=Phyra46976;biotype=protein_coding;external_name=gwEuk.30.28.1;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 311581 311981 . + . ID=Phyra46976;Parent=Phyra46976;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 311581 311730 . + 0 ID=Phyra46976;Parent=Phyra46976;rank=1 scaffold_30 . exon 311581 311730 . + . ID=Phyra46976.1;Parent=Phyra46976;constitutive=1;rank=1 scaffold_30 . CDS 311814 311981 . + 0 ID=Phyra46976;Parent=Phyra46976;rank=2 scaffold_30 . exon 311814 311981 . + . ID=Phyra46976.2;Parent=Phyra46976;constitutive=1;rank=2 scaffold_30 ensembl protein_coding_gene 312211 313657 . + . ID=Phyra46978;biotype=protein_coding;external_name=gwEuk.30.30.1;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 312211 313657 . + . ID=Phyra46978;Parent=Phyra46978;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 312211 312288 . + 0 ID=Phyra46978;Parent=Phyra46978;rank=1 scaffold_30 . exon 312211 312288 . + . ID=Phyra46978.1;Parent=Phyra46978;constitutive=1;rank=1 scaffold_30 . CDS 312373 313305 . + 0 ID=Phyra46978;Parent=Phyra46978;rank=2 scaffold_30 . exon 312373 313305 . + . ID=Phyra46978.2;Parent=Phyra46978;constitutive=1;rank=2 scaffold_30 . CDS 313390 313482 . + 0 ID=Phyra46978;Parent=Phyra46978;rank=3 scaffold_30 . exon 313390 313482 . + . ID=Phyra46978.3;Parent=Phyra46978;constitutive=1;rank=3 scaffold_30 . CDS 313553 313657 . + 0 ID=Phyra46978;Parent=Phyra46978;rank=4 scaffold_30 . exon 313553 313657 . + . ID=Phyra46978.4;Parent=Phyra46978;constitutive=1;rank=4 scaffold_30 ensembl protein_coding_gene 310019 311100 . - . ID=Phyra78279;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000084;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 310019 311100 . - . ID=Phyra78279;Parent=Phyra78279;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 310019 310094 . - 0 ID=Phyra78279;Parent=Phyra78279;rank=2 scaffold_30 . exon 310019 310094 . - . ID=Phyra78279.2;Parent=Phyra78279;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 310148 311100 . - 0 ID=Phyra78279;Parent=Phyra78279;rank=1 scaffold_30 . exon 310148 311100 . - . ID=Phyra78279.1;Parent=Phyra78279;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 313796 315111 . - . ID=Phyra78281;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000086;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 313796 315111 . - . ID=Phyra78281;Parent=Phyra78281;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 313796 314216 . - 0 ID=Phyra78281;Parent=Phyra78281;rank=5 scaffold_30 . exon 313796 314216 . - . ID=Phyra78281.5;Parent=Phyra78281;constitutive=1;ensembl_phase=2;rank=5 scaffold_30 . CDS 314288 314395 . - 0 ID=Phyra78281;Parent=Phyra78281;rank=4 scaffold_30 . exon 314288 314395 . - . ID=Phyra78281.4;Parent=Phyra78281;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_30 . CDS 314463 314651 . - 0 ID=Phyra78281;Parent=Phyra78281;rank=3 scaffold_30 . exon 314463 314651 . - . ID=Phyra78281.3;Parent=Phyra78281;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_30 . CDS 314718 314791 . - 0 ID=Phyra78281;Parent=Phyra78281;rank=2 scaffold_30 . exon 314718 314791 . - . ID=Phyra78281.2;Parent=Phyra78281;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 314872 315111 . - 0 ID=Phyra78281;Parent=Phyra78281;rank=1 scaffold_30 . exon 314872 315111 . - . ID=Phyra78281.1;Parent=Phyra78281;constitutive=1;rank=1 scaffold_30 . exon 306087 306257 . - . ID=Phyra95064.3;Parent=Phyra95064;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_30 . exon 306408 306614 . - . ID=Phyra95064.2;Parent=Phyra95064;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_30 . exon 306999 307650 . - . ID=Phyra95064.1;Parent=Phyra95064;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . biological_region 316349 316351 0.999 - . logic_name=eponine scaffold_30 . biological_region 318811 318811 0.999 - . logic_name=eponine scaffold_30 . biological_region 319440 319446 0.999 + . logic_name=eponine scaffold_30 . biological_region 319767 319769 0.999 + . logic_name=eponine scaffold_30 . biological_region 319920 319921 0.999 + . logic_name=eponine scaffold_30 . biological_region 319938 319945 0.999 + . logic_name=eponine scaffold_30 . biological_region 319941 319942 0.999 - . logic_name=eponine scaffold_30 . biological_region 319966 319973 0.999 + . logic_name=eponine scaffold_30 . biological_region 319992 320002 0.999 + . logic_name=eponine scaffold_30 . biological_region 320009 320019 0.999 - . logic_name=eponine scaffold_30 . biological_region 320047 320049 0.999 - . logic_name=eponine scaffold_30 . biological_region 320047 320050 0.999 + . logic_name=eponine scaffold_30 . biological_region 320058 320066 0.999 - . logic_name=eponine scaffold_30 . biological_region 320108 320117 0.999 - . logic_name=eponine scaffold_30 . biological_region 320132 320140 0.999 + . logic_name=eponine scaffold_30 . biological_region 320246 320248 0.999 - . logic_name=eponine scaffold_30 . biological_region 322555 322556 0.999 - . logic_name=eponine scaffold_30 ensembl protein_coding_gene 316194 319202 . + . ID=Phyra78282;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000087;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 316194 319202 . + . ID=Phyra78282;Parent=Phyra78282;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 316194 316422 . + 0 ID=Phyra78282;Parent=Phyra78282;rank=1 scaffold_30 . exon 316194 316422 . + . ID=Phyra78282.1;Parent=Phyra78282;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 316493 317069 . + 0 ID=Phyra78282;Parent=Phyra78282;rank=2 scaffold_30 . exon 316493 317069 . + . ID=Phyra78282.2;Parent=Phyra78282;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_30 . CDS 317155 317479 . + 0 ID=Phyra78282;Parent=Phyra78282;rank=3 scaffold_30 . exon 317155 317479 . + . ID=Phyra78282.3;Parent=Phyra78282;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 317520 319202 . + 0 ID=Phyra78282;Parent=Phyra78282;rank=4 scaffold_30 . exon 317520 319202 . + . ID=Phyra78282.4;Parent=Phyra78282;constitutive=1;rank=4 scaffold_30 ensembl protein_coding_gene 321501 326871 . - . ID=Phyra78284;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000089;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 321501 326871 . - . ID=Phyra78284;Parent=Phyra78284;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 321501 321511 . - 0 ID=Phyra78284;Parent=Phyra78284;rank=10 scaffold_30 . exon 321501 321511 . - . ID=Phyra78284.10;Parent=Phyra78284;constitutive=1;ensembl_phase=1;rank=10 scaffold_30 . CDS 321545 323140 . - 0 ID=Phyra78284;Parent=Phyra78284;rank=9 scaffold_30 . exon 321545 323140 . - . ID=Phyra78284.9;Parent=Phyra78284;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_30 . CDS 323338 324100 . - 0 ID=Phyra78284;Parent=Phyra78284;rank=8 scaffold_30 . exon 323338 324100 . - . ID=Phyra78284.8;Parent=Phyra78284;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_30 . CDS 324137 325195 . - 0 ID=Phyra78284;Parent=Phyra78284;rank=7 scaffold_30 . exon 324137 325195 . - . ID=Phyra78284.7;Parent=Phyra78284;constitutive=1;rank=7 scaffold_30 . CDS 325279 325697 . - 0 ID=Phyra78284;Parent=Phyra78284;rank=6 scaffold_30 . CDS 325782 325986 . - 0 ID=Phyra78284;Parent=Phyra78284;rank=5 scaffold_30 . CDS 326057 326155 . - 0 ID=Phyra78284;Parent=Phyra78284;rank=4 scaffold_30 . CDS 326224 326331 . - 0 ID=Phyra78284;Parent=Phyra78284;rank=3 scaffold_30 . CDS 326402 326646 . - 0 ID=Phyra78284;Parent=Phyra78284;rank=2 scaffold_30 . CDS 326727 326871 . - 0 ID=Phyra78284;Parent=Phyra78284;rank=1 scaffold_30 ensembl protein_coding_gene 319590 320372 . - . ID=Phyra95068;biotype=protein_coding;external_name=C_scaffold_30000031;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 319590 320372 . - . ID=Phyra95068;Parent=Phyra95068;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 319590 320372 . - 0 ID=Phyra95068;Parent=Phyra95068;rank=1 scaffold_30 . exon 319590 320372 . - . ID=Phyra95068.1;Parent=Phyra95068;constitutive=1;rank=1 scaffold_30 . repeat_region 326385 326393 . ? . description=dust scaffold_30 . repeat_region 334722 334751 . ? . description=trf scaffold_30 . exon 325279 325697 . - . ID=Phyra78284.6;Parent=Phyra78284;constitutive=1;ensembl_phase=1;rank=6 scaffold_30 . exon 325782 325986 . - . ID=Phyra78284.5;Parent=Phyra78284;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_30 . exon 326057 326155 . - . ID=Phyra78284.4;Parent=Phyra78284;constitutive=1;rank=4 scaffold_30 . exon 326224 326331 . - . ID=Phyra78284.3;Parent=Phyra78284;constitutive=1;rank=3 scaffold_30 . exon 326402 326646 . - . ID=Phyra78284.2;Parent=Phyra78284;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . exon 326727 326871 . - . ID=Phyra78284.1;Parent=Phyra78284;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 326999 332246 . + . ID=Phyra78285;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000090;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 326999 332246 . + . ID=Phyra78285;Parent=Phyra78285;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 326999 327151 . + 0 ID=Phyra78285;Parent=Phyra78285;rank=1 scaffold_30 . exon 326999 327151 . + . ID=Phyra78285.1;Parent=Phyra78285;constitutive=1;rank=1 scaffold_30 . CDS 327213 327293 . + 0 ID=Phyra78285;Parent=Phyra78285;rank=2 scaffold_30 . exon 327213 327293 . + . ID=Phyra78285.2;Parent=Phyra78285;constitutive=1;rank=2 scaffold_30 . CDS 327350 327432 . + 0 ID=Phyra78285;Parent=Phyra78285;rank=3 scaffold_30 . exon 327350 327432 . + . ID=Phyra78285.3;Parent=Phyra78285;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_30 . CDS 327495 327573 . + 0 ID=Phyra78285;Parent=Phyra78285;rank=4 scaffold_30 . exon 327495 327573 . + . ID=Phyra78285.4;Parent=Phyra78285;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 327638 327769 . + 0 ID=Phyra78285;Parent=Phyra78285;rank=5 scaffold_30 . exon 327638 327769 . + . ID=Phyra78285.5;Parent=Phyra78285;constitutive=1;rank=5 scaffold_30 . CDS 327933 328140 . + 0 ID=Phyra78285;Parent=Phyra78285;rank=6 scaffold_30 . exon 327933 328140 . + . ID=Phyra78285.6;Parent=Phyra78285;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_30 . CDS 328525 328624 . + 0 ID=Phyra78285;Parent=Phyra78285;rank=7 scaffold_30 . exon 328525 328624 . + . ID=Phyra78285.7;Parent=Phyra78285;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_30 . CDS 328694 332246 . + 0 ID=Phyra78285;Parent=Phyra78285;rank=8 scaffold_30 . exon 328694 332246 . + . ID=Phyra78285.8;Parent=Phyra78285;constitutive=1;ensembl_phase=2;rank=8 scaffold_30 ensembl protein_coding_gene 332358 333632 . - . ID=Phyra78286;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000091;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 332358 333632 . - . ID=Phyra78286;Parent=Phyra78286;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 332358 333632 . - 0 ID=Phyra78286;Parent=Phyra78286;rank=1 scaffold_30 . exon 332358 333632 . - . ID=Phyra78286.1;Parent=Phyra78286;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 334260 335446 . + . ID=Phyra78287;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000092;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 334260 335446 . + . ID=Phyra78287;Parent=Phyra78287;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 334260 335374 . + 0 ID=Phyra78287;Parent=Phyra78287;rank=1 scaffold_30 . exon 334260 335374 . + . ID=Phyra78287.1;Parent=Phyra78287;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 335443 335446 . + 0 ID=Phyra78287;Parent=Phyra78287;rank=2 scaffold_30 . biological_region 339401 339401 0.999 + . logic_name=eponine scaffold_30 . exon 335443 335446 . + . ID=Phyra78287.2;Parent=Phyra78287;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 ensembl protein_coding_gene 336053 338248 . - . ID=Phyra78288;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000093;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 336053 338248 . - . ID=Phyra78288;Parent=Phyra78288;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 336053 336148 . - 0 ID=Phyra78288;Parent=Phyra78288;rank=3 scaffold_30 . exon 336053 336148 . - . ID=Phyra78288.3;Parent=Phyra78288;constitutive=1;rank=3 scaffold_30 . CDS 336317 336358 . - 0 ID=Phyra78288;Parent=Phyra78288;rank=2 scaffold_30 . exon 336317 336358 . - . ID=Phyra78288.2;Parent=Phyra78288;constitutive=1;rank=2 scaffold_30 . CDS 336386 338248 . - 0 ID=Phyra78288;Parent=Phyra78288;rank=1 scaffold_30 . exon 336386 338248 . - . ID=Phyra78288.1;Parent=Phyra78288;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 338415 339788 . + . ID=Phyra78289;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000094;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 338415 339788 . + . ID=Phyra78289;Parent=Phyra78289;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 338415 339788 . + 0 ID=Phyra78289;Parent=Phyra78289;rank=1 scaffold_30 . exon 338415 339788 . + . ID=Phyra78289.1;Parent=Phyra78289;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 340314 341687 . - . ID=Phyra78290;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000095;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 340314 341687 . - . ID=Phyra78290;Parent=Phyra78290;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 340314 340402 . - 0 ID=Phyra78290;Parent=Phyra78290;rank=6 scaffold_30 . exon 340314 340402 . - . ID=Phyra78290.6;Parent=Phyra78290;constitutive=1;ensembl_phase=1;rank=6 scaffold_30 . CDS 340481 340554 . - 0 ID=Phyra78290;Parent=Phyra78290;rank=5 scaffold_30 . exon 340481 340554 . - . ID=Phyra78290.5;Parent=Phyra78290;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_30 . CDS 340622 340740 . - 0 ID=Phyra78290;Parent=Phyra78290;rank=4 scaffold_30 . exon 340622 340740 . - . ID=Phyra78290.4;Parent=Phyra78290;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_30 . CDS 340808 341099 . - 0 ID=Phyra78290;Parent=Phyra78290;rank=3 scaffold_30 . exon 340808 341099 . - . ID=Phyra78290.3;Parent=Phyra78290;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 341166 341271 . - 0 ID=Phyra78290;Parent=Phyra78290;rank=2 scaffold_30 . exon 341166 341271 . - . ID=Phyra78290.2;Parent=Phyra78290;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_30 . CDS 341333 341687 . - 0 ID=Phyra78290;Parent=Phyra78290;rank=1 scaffold_30 . exon 341333 341687 . - . ID=Phyra78290.1;Parent=Phyra78290;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 341916 344051 . + . ID=Phyra78291;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000096;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 341916 344051 . + . ID=Phyra78291;Parent=Phyra78291;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 341916 341996 . + 0 ID=Phyra78291;Parent=Phyra78291;rank=1 scaffold_30 . exon 341916 341996 . + . ID=Phyra78291.1;Parent=Phyra78291;constitutive=1;rank=1 scaffold_30 . CDS 342063 344051 . + 0 ID=Phyra78291;Parent=Phyra78291;rank=2 scaffold_30 . exon 342063 344051 . + . ID=Phyra78291.2;Parent=Phyra78291;constitutive=1;rank=2 scaffold_30 ensembl protein_coding_gene 344232 345705 . - . ID=Phyra78292;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000097;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 344232 345705 . - . ID=Phyra78292;Parent=Phyra78292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 344232 344420 . - 0 ID=Phyra78292;Parent=Phyra78292;rank=9 scaffold_30 . exon 344232 344420 . - . ID=Phyra78292.9;Parent=Phyra78292;constitutive=1;rank=9 scaffold_30 . CDS 344494 344584 . - 0 ID=Phyra78292;Parent=Phyra78292;rank=8 scaffold_30 . exon 344494 344584 . - . ID=Phyra78292.8;Parent=Phyra78292;constitutive=1;ensembl_phase=2;rank=8 scaffold_30 . CDS 344658 344738 . - 0 ID=Phyra78292;Parent=Phyra78292;rank=7 scaffold_30 . exon 344658 344738 . - . ID=Phyra78292.7;Parent=Phyra78292;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_30 . CDS 344815 344895 . - 0 ID=Phyra78292;Parent=Phyra78292;rank=6 scaffold_30 . CDS 344961 345161 . - 0 ID=Phyra78292;Parent=Phyra78292;rank=5 scaffold_30 . CDS 345230 345269 . - 0 ID=Phyra78292;Parent=Phyra78292;rank=4 scaffold_30 . CDS 345342 345387 . - 0 ID=Phyra78292;Parent=Phyra78292;rank=3 scaffold_30 . CDS 345460 345545 . - 0 ID=Phyra78292;Parent=Phyra78292;rank=2 scaffold_30 . CDS 345609 345705 . - 0 ID=Phyra78292;Parent=Phyra78292;rank=1 scaffold_30 . repeat_region 348699 348723 . ? . description=trf scaffold_30 . exon 344815 344895 . - . ID=Phyra78292.6;Parent=Phyra78292;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_30 . exon 344961 345161 . - . ID=Phyra78292.5;Parent=Phyra78292;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_30 . exon 345230 345269 . - . ID=Phyra78292.4;Parent=Phyra78292;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_30 . exon 345342 345387 . - . ID=Phyra78292.3;Parent=Phyra78292;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . exon 345460 345545 . - . ID=Phyra78292.2;Parent=Phyra78292;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . exon 345609 345705 . - . ID=Phyra78292.1;Parent=Phyra78292;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 345957 347406 . - . ID=Phyra78293;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000098;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 345957 347406 . - . ID=Phyra78293;Parent=Phyra78293;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 345957 346588 . - 0 ID=Phyra78293;Parent=Phyra78293;rank=3 scaffold_30 . exon 345957 346588 . - . ID=Phyra78293.3;Parent=Phyra78293;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 346658 346819 . - 0 ID=Phyra78293;Parent=Phyra78293;rank=2 scaffold_30 . exon 346658 346819 . - . ID=Phyra78293.2;Parent=Phyra78293;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 346893 347406 . - 0 ID=Phyra78293;Parent=Phyra78293;rank=1 scaffold_30 . exon 346893 347406 . - . ID=Phyra78293.1;Parent=Phyra78293;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 347891 348373 . - . ID=Phyra78294;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000099;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 347891 348373 . - . ID=Phyra78294;Parent=Phyra78294;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 347891 348373 . - 0 ID=Phyra78294;Parent=Phyra78294;rank=1 scaffold_30 . exon 347891 348373 . - . ID=Phyra78294.1;Parent=Phyra78294;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 349521 351848 . - . ID=Phyra78295;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000100;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 349521 351848 . - . ID=Phyra78295;Parent=Phyra78295;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 349521 351848 . - 0 ID=Phyra78295;Parent=Phyra78295;rank=1 scaffold_30 . exon 349521 351848 . - . ID=Phyra78295.1;Parent=Phyra78295;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 352912 355275 . - . ID=Phyra78296;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000101;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 352912 355275 . - . ID=Phyra78296;Parent=Phyra78296;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 352912 355275 . - 0 ID=Phyra78296;Parent=Phyra78296;rank=1 scaffold_30 . exon 352912 355275 . - . ID=Phyra78296.1;Parent=Phyra78296;constitutive=1;rank=1 scaffold_30 . biological_region 355024 355025 0.999 - . logic_name=eponine scaffold_30 . biological_region 355476 355476 0.999 + . logic_name=eponine scaffold_30 . biological_region 357010 357010 0.999 - . logic_name=eponine scaffold_30 . biological_region 357461 357462 0.999 + . logic_name=eponine scaffold_30 . biological_region 358213 358216 0.999 - . logic_name=eponine scaffold_30 . biological_region 358751 358753 0.999 - . logic_name=eponine scaffold_30 . biological_region 360161 360163 0.999 - . logic_name=eponine scaffold_30 . biological_region 363081 363083 0.999 - . logic_name=eponine scaffold_30 ensembl protein_coding_gene 357210 359573 . + . ID=Phyra78297;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000102;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 357210 359573 . + . ID=Phyra78297;Parent=Phyra78297;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 357210 359573 . + 0 ID=Phyra78297;Parent=Phyra78297;rank=1 scaffold_30 . exon 357210 359573 . + . ID=Phyra78297.1;Parent=Phyra78297;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 364436 368599 . - . ID=Phyra78298;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000103;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 364436 368599 . - . ID=Phyra78298;Parent=Phyra78298;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 364436 365181 . - 0 ID=Phyra78298;Parent=Phyra78298;rank=4 scaffold_30 . exon 364436 365181 . - . ID=Phyra78298.4;Parent=Phyra78298;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 365590 367951 . - 0 ID=Phyra78298;Parent=Phyra78298;rank=3 scaffold_30 . CDS 368019 368219 . - 0 ID=Phyra78298;Parent=Phyra78298;rank=2 scaffold_30 . CDS 368285 368599 . - 0 ID=Phyra78298;Parent=Phyra78298;rank=1 scaffold_30 ensembl protein_coding_gene 370634 371677 . - . ID=Phyra71601;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_30000012;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 370634 371677 . - . ID=Phyra71601;Parent=Phyra71601;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 370634 371677 . - 0 ID=Phyra71601;Parent=Phyra71601;rank=1 scaffold_30 . exon 370634 371677 . - . ID=Phyra71601.1;Parent=Phyra71601;constitutive=1;rank=1 scaffold_30 . exon 365590 367951 . - . ID=Phyra78298.3;Parent=Phyra78298;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . exon 368019 368219 . - . ID=Phyra78298.2;Parent=Phyra78298;constitutive=1;rank=2 scaffold_30 . exon 368285 368599 . - . ID=Phyra78298.1;Parent=Phyra78298;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 372837 377541 . + . ID=Phyra78300;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000105;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 372837 377541 . + . ID=Phyra78300;Parent=Phyra78300;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 372837 372864 . + 0 ID=Phyra78300;Parent=Phyra78300;rank=1 scaffold_30 . exon 372837 372864 . + . ID=Phyra78300.1;Parent=Phyra78300;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 372894 375221 . + 0 ID=Phyra78300;Parent=Phyra78300;rank=2 scaffold_30 . exon 372894 375221 . + . ID=Phyra78300.2;Parent=Phyra78300;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 375270 375370 . + 0 ID=Phyra78300;Parent=Phyra78300;rank=3 scaffold_30 . CDS 375454 377541 . + 0 ID=Phyra78300;Parent=Phyra78300;rank=4 scaffold_30 . biological_region 375919 375925 0.999 - . logic_name=eponine scaffold_30 . biological_region 377298 377301 0.999 - . logic_name=eponine scaffold_30 . biological_region 377897 377899 0.999 + . logic_name=eponine scaffold_30 . biological_region 380224 380229 0.999 - . logic_name=eponine scaffold_30 . biological_region 384162 384163 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 380638 381081 . + . ID=Phyra47000;biotype=protein_coding;external_name=gwEuk.30.52.1;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 380638 381081 . + . ID=Phyra47000;Parent=Phyra47000;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 380638 381081 . + 0 ID=Phyra47000;Parent=Phyra47000;rank=1 scaffold_30 . exon 380638 381081 . + . ID=Phyra47000.1;Parent=Phyra47000;constitutive=1;rank=1 scaffold_30 . exon 375270 375370 . + . ID=Phyra78300.3;Parent=Phyra78300;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 . exon 375454 377541 . + . ID=Phyra78300.4;Parent=Phyra78300;constitutive=1;rank=4 scaffold_30 ensembl protein_coding_gene 378883 380036 . - . ID=Phyra78302;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000107;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 378883 380036 . - . ID=Phyra78302;Parent=Phyra78302;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 378883 378956 . - 0 ID=Phyra78302;Parent=Phyra78302;rank=5 scaffold_30 . exon 378883 378956 . - . ID=Phyra78302.5;Parent=Phyra78302;constitutive=1;ensembl_phase=1;rank=5 scaffold_30 . CDS 379023 379239 . - 0 ID=Phyra78302;Parent=Phyra78302;rank=4 scaffold_30 . exon 379023 379239 . - . ID=Phyra78302.4;Parent=Phyra78302;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_30 . CDS 379299 379535 . - 0 ID=Phyra78302;Parent=Phyra78302;rank=3 scaffold_30 . exon 379299 379535 . - . ID=Phyra78302.3;Parent=Phyra78302;constitutive=1;rank=3 scaffold_30 . CDS 379606 379782 . - 0 ID=Phyra78302;Parent=Phyra78302;rank=2 scaffold_30 . exon 379606 379782 . - . ID=Phyra78302.2;Parent=Phyra78302;constitutive=1;rank=2 scaffold_30 . CDS 379863 380036 . - 0 ID=Phyra78302;Parent=Phyra78302;rank=1 scaffold_30 . exon 379863 380036 . - . ID=Phyra78302.1;Parent=Phyra78302;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 382007 383281 . - . ID=Phyra78304;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000109;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 382007 383281 . - . ID=Phyra78304;Parent=Phyra78304;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 382007 382043 . - 0 ID=Phyra78304;Parent=Phyra78304;rank=5 scaffold_30 . exon 382007 382043 . - . ID=Phyra78304.5;Parent=Phyra78304;constitutive=1;ensembl_phase=2;rank=5 scaffold_30 . CDS 382132 382220 . - 0 ID=Phyra78304;Parent=Phyra78304;rank=4 scaffold_30 . exon 382132 382220 . - . ID=Phyra78304.4;Parent=Phyra78304;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_30 . CDS 382300 382531 . - 0 ID=Phyra78304;Parent=Phyra78304;rank=3 scaffold_30 . exon 382300 382531 . - . ID=Phyra78304.3;Parent=Phyra78304;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 382597 382841 . - 0 ID=Phyra78304;Parent=Phyra78304;rank=2 scaffold_30 . exon 382597 382841 . - . ID=Phyra78304.2;Parent=Phyra78304;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 382916 383281 . - 0 ID=Phyra78304;Parent=Phyra78304;rank=1 scaffold_30 . exon 382916 383281 . - . ID=Phyra78304.1;Parent=Phyra78304;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 383770 386465 . + . ID=Phyra78305;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000110;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 383770 386465 . + . ID=Phyra78305;Parent=Phyra78305;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 383770 384038 . + 0 ID=Phyra78305;Parent=Phyra78305;rank=1 scaffold_30 . exon 383770 384038 . + . ID=Phyra78305.1;Parent=Phyra78305;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 384116 385718 . + 0 ID=Phyra78305;Parent=Phyra78305;rank=2 scaffold_30 . exon 384116 385718 . + . ID=Phyra78305.2;Parent=Phyra78305;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 385878 386465 . + 0 ID=Phyra78305;Parent=Phyra78305;rank=3 scaffold_30 ensembl protein_coding_gene 377671 378708 . + . ID=Phyra95078;biotype=protein_coding;external_name=C_scaffold_30000041;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 377671 378708 . + . ID=Phyra95078;Parent=Phyra95078;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 377671 378708 . + 0 ID=Phyra95078;Parent=Phyra95078;rank=1 scaffold_30 . exon 377671 378708 . + . ID=Phyra95078.1;Parent=Phyra95078;constitutive=1;rank=1 scaffold_30 . repeat_region 388069 388077 . ? . description=dust scaffold_30 . repeat_region 388103 388145 . ? . description=trf scaffold_30 . repeat_region 391122 391141 . ? . description=dust scaffold_30 . exon 385878 386465 . + . ID=Phyra78305.3;Parent=Phyra78305;constitutive=1;rank=3 scaffold_30 . biological_region 394411 394412 0.999 - . logic_name=eponine scaffold_30 . biological_region 394861 394861 0.999 + . logic_name=eponine scaffold_30 . biological_region 395778 395778 0.999 - . logic_name=eponine scaffold_30 . biological_region 398052 398059 0.999 + . logic_name=eponine scaffold_30 . biological_region 398105 398110 0.999 - . logic_name=eponine scaffold_30 ensembl protein_coding_gene 394072 395526 . + . ID=Phyra78306;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000111;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 394072 395526 . + . ID=Phyra78306;Parent=Phyra78306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 394072 395526 . + 0 ID=Phyra78306;Parent=Phyra78306;rank=1 scaffold_30 . exon 394072 395526 . + . ID=Phyra78306.1;Parent=Phyra78306;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 397959 399569 . + . ID=Phyra78308;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000113;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 397959 399569 . + . ID=Phyra78308;Parent=Phyra78308;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 397959 399569 . + 0 ID=Phyra78308;Parent=Phyra78308;rank=1 scaffold_30 . exon 397959 399569 . + . ID=Phyra78308.1;Parent=Phyra78308;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 399870 401123 . + . ID=Phyra78309;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000114;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 399870 401123 . + . ID=Phyra78309;Parent=Phyra78309;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 399870 401123 . + 0 ID=Phyra78309;Parent=Phyra78309;rank=1 scaffold_30 . exon 399870 401123 . + . ID=Phyra78309.1;Parent=Phyra78309;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 396123 396711 . - . ID=Phyra95083;biotype=protein_coding;external_name=C_scaffold_30000046;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 396123 396711 . - . ID=Phyra95083;Parent=Phyra95083;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 396123 396142 . - 0 ID=Phyra95083;Parent=Phyra95083;rank=4 scaffold_30 . exon 396123 396142 . - . ID=Phyra95083.4;Parent=Phyra95083;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 396212 396290 . - 0 ID=Phyra95083;Parent=Phyra95083;rank=3 scaffold_30 . exon 396212 396290 . - . ID=Phyra95083.3;Parent=Phyra95083;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . CDS 396382 396630 . - 0 ID=Phyra95083;Parent=Phyra95083;rank=2 scaffold_30 . exon 396382 396630 . - . ID=Phyra95083.2;Parent=Phyra95083;constitutive=1;rank=2 scaffold_30 . CDS 396673 396711 . - 0 ID=Phyra95083;Parent=Phyra95083;rank=1 scaffold_30 . exon 396673 396711 . - . ID=Phyra95083.1;Parent=Phyra95083;constitutive=1;rank=1 scaffold_30 . repeat_region 409533 409547 . ? . description=dust scaffold_30 . repeat_region 409550 409557 . ? . description=dust scaffold_30 . repeat_region 410313 410338 . ? . description=trf scaffold_30 . repeat_region 411232 411265 . ? . description=trf scaffold_30 ensembl protein_coding_gene 406849 408099 . - . ID=Phyra78310;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000115;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 406849 408099 . - . ID=Phyra78310;Parent=Phyra78310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 406849 408099 . - 0 ID=Phyra78310;Parent=Phyra78310;rank=1 scaffold_30 . exon 406849 408099 . - . ID=Phyra78310.1;Parent=Phyra78310;constitutive=1;rank=1 scaffold_30 . repeat_region 421387 424717 . ? . description=dust scaffold_30 . repeat_region 425520 425569 . ? . description=dust scaffold_30 . repeat_region 430820 430839 . ? . description=dust scaffold_30 . repeat_region 430852 430861 . ? . description=dust scaffold_30 . repeat_region 430968 431017 . ? . description=dust scaffold_30 . repeat_region 432516 432523 . ? . description=dust scaffold_30 . repeat_region 434390 434419 . ? . description=trf scaffold_30 . repeat_region 434419 434483 . ? . description=trf scaffold_30 . biological_region 442482 442486 0.999 - . logic_name=eponine scaffold_30 . biological_region 442587 442592 0.999 - . logic_name=eponine scaffold_30 . biological_region 442680 442681 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 442417 444426 . + . ID=Phyra71604;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_30000015;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 442417 444426 . + . ID=Phyra71604;Parent=Phyra71604;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 442417 444426 . + 0 ID=Phyra71604;Parent=Phyra71604;rank=1 scaffold_30 . exon 442417 444426 . + . ID=Phyra71604.1;Parent=Phyra71604;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 435551 436935 . - . ID=Phyra78311;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000116;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 435551 436935 . - . ID=Phyra78311;Parent=Phyra78311;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 435551 436006 . - 0 ID=Phyra78311;Parent=Phyra78311;rank=4 scaffold_30 . exon 435551 436006 . - . ID=Phyra78311.4;Parent=Phyra78311;constitutive=1;rank=4 scaffold_30 . CDS 436059 436305 . - 0 ID=Phyra78311;Parent=Phyra78311;rank=3 scaffold_30 . exon 436059 436305 . - . ID=Phyra78311.3;Parent=Phyra78311;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 436633 436904 . - 0 ID=Phyra78311;Parent=Phyra78311;rank=2 scaffold_30 . exon 436633 436904 . - . ID=Phyra78311.2;Parent=Phyra78311;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 436927 436935 . - 0 ID=Phyra78311;Parent=Phyra78311;rank=1 scaffold_30 . exon 436927 436935 . - . ID=Phyra78311.1;Parent=Phyra78311;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 439074 440005 . - . ID=Phyra78312;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000117;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 439074 440005 . - . ID=Phyra78312;Parent=Phyra78312;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 439074 439234 . - 0 ID=Phyra78312;Parent=Phyra78312;rank=4 scaffold_30 . exon 439074 439234 . - . ID=Phyra78312.4;Parent=Phyra78312;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 439298 439374 . - 0 ID=Phyra78312;Parent=Phyra78312;rank=3 scaffold_30 . exon 439298 439374 . - . ID=Phyra78312.3;Parent=Phyra78312;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 439432 439541 . - 0 ID=Phyra78312;Parent=Phyra78312;rank=2 scaffold_30 . exon 439432 439541 . - . ID=Phyra78312.2;Parent=Phyra78312;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 439622 440005 . - 0 ID=Phyra78312;Parent=Phyra78312;rank=1 scaffold_30 . exon 439622 440005 . - . ID=Phyra78312.1;Parent=Phyra78312;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 441126 442247 . + . ID=Phyra78313;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000118;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 441126 442247 . + . ID=Phyra78313;Parent=Phyra78313;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 441126 441360 . + 0 ID=Phyra78313;Parent=Phyra78313;rank=1 scaffold_30 . exon 441126 441360 . + . ID=Phyra78313.1;Parent=Phyra78313;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 441430 441518 . + 0 ID=Phyra78313;Parent=Phyra78313;rank=2 scaffold_30 . exon 441430 441518 . + . ID=Phyra78313.2;Parent=Phyra78313;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 441590 441676 . + 0 ID=Phyra78313;Parent=Phyra78313;rank=3 scaffold_30 . exon 441590 441676 . + . ID=Phyra78313.3;Parent=Phyra78313;constitutive=1;rank=3 scaffold_30 . CDS 441735 441898 . + 0 ID=Phyra78313;Parent=Phyra78313;rank=4 scaffold_30 . exon 441735 441898 . + . ID=Phyra78313.4;Parent=Phyra78313;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_30 . CDS 441967 442131 . + 0 ID=Phyra78313;Parent=Phyra78313;rank=5 scaffold_30 . exon 441967 442131 . + . ID=Phyra78313.5;Parent=Phyra78313;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_30 . CDS 442196 442247 . + 0 ID=Phyra78313;Parent=Phyra78313;rank=6 scaffold_30 . exon 442196 442247 . + . ID=Phyra78313.6;Parent=Phyra78313;constitutive=1;ensembl_phase=2;rank=6 scaffold_30 ensembl protein_coding_gene 445077 445412 . + . ID=Phyra71605;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_30000016;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 445077 445412 . + . ID=Phyra71605;Parent=Phyra71605;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 445077 445412 . + 0 ID=Phyra71605;Parent=Phyra71605;rank=1 scaffold_30 . exon 445077 445412 . + . ID=Phyra71605.1;Parent=Phyra71605;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 445876 448251 . - . ID=Phyra78316;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000121;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 445876 448251 . - . ID=Phyra78316;Parent=Phyra78316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 445876 448251 . - 0 ID=Phyra78316;Parent=Phyra78316;rank=1 scaffold_30 . exon 445876 448251 . - . ID=Phyra78316.1;Parent=Phyra78316;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 451664 452493 . - . ID=Phyra78318;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000123;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 451664 452493 . - . ID=Phyra78318;Parent=Phyra78318;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 451664 451742 . - 0 ID=Phyra78318;Parent=Phyra78318;rank=4 scaffold_30 . exon 451664 451742 . - . ID=Phyra78318.4;Parent=Phyra78318;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 451820 452051 . - 0 ID=Phyra78318;Parent=Phyra78318;rank=3 scaffold_30 . exon 451820 452051 . - . ID=Phyra78318.3;Parent=Phyra78318;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_30 . CDS 452125 452240 . - 0 ID=Phyra78318;Parent=Phyra78318;rank=2 scaffold_30 . exon 452125 452240 . - . ID=Phyra78318.2;Parent=Phyra78318;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 452486 452493 . - 0 ID=Phyra78318;Parent=Phyra78318;rank=1 scaffold_30 . exon 452486 452493 . - . ID=Phyra78318.1;Parent=Phyra78318;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 449406 451434 . + . ID=Phyra95086;biotype=protein_coding;external_name=C_scaffold_30000049;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 449406 451434 . + . ID=Phyra95086;Parent=Phyra95086;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 449406 449568 . + 0 ID=Phyra95086;Parent=Phyra95086;rank=1 scaffold_30 . exon 449406 449568 . + . ID=Phyra95086.1;Parent=Phyra95086;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 449628 449958 . + 0 ID=Phyra95086;Parent=Phyra95086;rank=2 scaffold_30 . exon 449628 449958 . + . ID=Phyra95086.2;Parent=Phyra95086;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_30 . CDS 450043 450094 . + 0 ID=Phyra95086;Parent=Phyra95086;rank=3 scaffold_30 . exon 450043 450094 . + . ID=Phyra95086.3;Parent=Phyra95086;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 450176 450341 . + 0 ID=Phyra95086;Parent=Phyra95086;rank=4 scaffold_30 . exon 450176 450341 . + . ID=Phyra95086.4;Parent=Phyra95086;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_30 . CDS 450407 450482 . + 0 ID=Phyra95086;Parent=Phyra95086;rank=5 scaffold_30 . exon 450407 450482 . + . ID=Phyra95086.5;Parent=Phyra95086;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_30 . CDS 450565 450673 . + 0 ID=Phyra95086;Parent=Phyra95086;rank=6 scaffold_30 . exon 450565 450673 . + . ID=Phyra95086.6;Parent=Phyra95086;constitutive=1;ensembl_phase=2;rank=6 scaffold_30 . CDS 450758 450874 . + 0 ID=Phyra95086;Parent=Phyra95086;rank=7 scaffold_30 . exon 450758 450874 . + . ID=Phyra95086.7;Parent=Phyra95086;constitutive=1;rank=7 scaffold_30 . CDS 450945 451037 . + 0 ID=Phyra95086;Parent=Phyra95086;rank=8 scaffold_30 . exon 450945 451037 . + . ID=Phyra95086.8;Parent=Phyra95086;constitutive=1;rank=8 scaffold_30 . CDS 451114 451434 . + 0 ID=Phyra95086;Parent=Phyra95086;rank=9 scaffold_30 . exon 451114 451434 . + . ID=Phyra95086.9;Parent=Phyra95086;constitutive=1;rank=9 scaffold_30 ensembl protein_coding_gene 452993 456142 . + . ID=Phyra95090;biotype=protein_coding;external_name=C_scaffold_30000053;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 452993 456142 . + . ID=Phyra95090;Parent=Phyra95090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 452993 453689 . + 0 ID=Phyra95090;Parent=Phyra95090;rank=1 scaffold_30 . exon 452993 453689 . + . ID=Phyra95090.1;Parent=Phyra95090;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 453763 453941 . + 0 ID=Phyra95090;Parent=Phyra95090;rank=2 scaffold_30 . CDS 454467 454487 . + 0 ID=Phyra95090;Parent=Phyra95090;rank=3 scaffold_30 . CDS 454937 455034 . + 0 ID=Phyra95090;Parent=Phyra95090;rank=4 scaffold_30 . CDS 455092 455194 . + 0 ID=Phyra95090;Parent=Phyra95090;rank=5 scaffold_30 . CDS 455266 455307 . + 0 ID=Phyra95090;Parent=Phyra95090;rank=6 scaffold_30 . CDS 455382 455533 . + 0 ID=Phyra95090;Parent=Phyra95090;rank=7 scaffold_30 . CDS 455675 455789 . + 0 ID=Phyra95090;Parent=Phyra95090;rank=8 scaffold_30 . CDS 455979 456142 . + 0 ID=Phyra95090;Parent=Phyra95090;rank=9 scaffold_30 . repeat_region 454676 454684 . ? . description=dust scaffold_30 . repeat_region 456623 456630 . ? . description=dust scaffold_30 . biological_region 458248 458251 0.999 - . logic_name=eponine scaffold_30 . biological_region 459604 459604 0.999 - . logic_name=eponine scaffold_30 . biological_region 462904 462905 0.999 + . logic_name=eponine scaffold_30 . biological_region 462966 462966 0.999 + . logic_name=eponine scaffold_30 . biological_region 462971 462976 0.999 - . logic_name=eponine scaffold_30 . biological_region 462986 462988 0.999 - . logic_name=eponine scaffold_30 . biological_region 462995 462998 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 458564 461783 . + . ID=Phyra78320;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000125;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 458564 461783 . + . ID=Phyra78320;Parent=Phyra78320;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 458564 458814 . + 0 ID=Phyra78320;Parent=Phyra78320;rank=1 scaffold_30 . exon 458564 458814 . + . ID=Phyra78320.1;Parent=Phyra78320;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 458880 458996 . + 0 ID=Phyra78320;Parent=Phyra78320;rank=2 scaffold_30 . exon 458880 458996 . + . ID=Phyra78320.2;Parent=Phyra78320;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_30 . CDS 459060 459471 . + 0 ID=Phyra78320;Parent=Phyra78320;rank=3 scaffold_30 . exon 459060 459471 . + . ID=Phyra78320.3;Parent=Phyra78320;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 459511 459661 . + 0 ID=Phyra78320;Parent=Phyra78320;rank=4 scaffold_30 . exon 459511 459661 . + . ID=Phyra78320.4;Parent=Phyra78320;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_30 . CDS 459724 459861 . + 0 ID=Phyra78320;Parent=Phyra78320;rank=5 scaffold_30 . exon 459724 459861 . + . ID=Phyra78320.5;Parent=Phyra78320;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_30 . CDS 459945 460002 . + 0 ID=Phyra78320;Parent=Phyra78320;rank=6 scaffold_30 . exon 459945 460002 . + . ID=Phyra78320.6;Parent=Phyra78320;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_30 . CDS 460232 460498 . + 0 ID=Phyra78320;Parent=Phyra78320;rank=7 scaffold_30 . exon 460232 460498 . + . ID=Phyra78320.7;Parent=Phyra78320;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_30 . CDS 460571 460687 . + 0 ID=Phyra78320;Parent=Phyra78320;rank=8 scaffold_30 . exon 460571 460687 . + . ID=Phyra78320.8;Parent=Phyra78320;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_30 . CDS 460749 461157 . + 0 ID=Phyra78320;Parent=Phyra78320;rank=9 scaffold_30 . exon 460749 461157 . + . ID=Phyra78320.9;Parent=Phyra78320;constitutive=1;ensembl_phase=2;rank=9 scaffold_30 . CDS 461235 461475 . + 0 ID=Phyra78320;Parent=Phyra78320;rank=10 scaffold_30 . exon 461235 461475 . + . ID=Phyra78320.10;Parent=Phyra78320;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_30 . CDS 461524 461783 . + 0 ID=Phyra78320;Parent=Phyra78320;rank=11 scaffold_30 . exon 461524 461783 . + . ID=Phyra78320.11;Parent=Phyra78320;constitutive=1;ensembl_phase=1;rank=11 scaffold_30 ensembl protein_coding_gene 462827 464300 . + . ID=Phyra78321;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000126;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 462827 464300 . + . ID=Phyra78321;Parent=Phyra78321;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 462827 463218 . + 0 ID=Phyra78321;Parent=Phyra78321;rank=1 scaffold_30 . exon 462827 463218 . + . ID=Phyra78321.1;Parent=Phyra78321;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 463303 463681 . + 0 ID=Phyra78321;Parent=Phyra78321;rank=2 scaffold_30 . CDS 463761 464300 . + 0 ID=Phyra78321;Parent=Phyra78321;rank=3 scaffold_30 . exon 453763 453941 . + . ID=Phyra95090.2;Parent=Phyra95090;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . exon 454467 454487 . + . ID=Phyra95090.3;Parent=Phyra95090;constitutive=1;rank=3 scaffold_30 . exon 454937 455034 . + . ID=Phyra95090.4;Parent=Phyra95090;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_30 . exon 455092 455194 . + . ID=Phyra95090.5;Parent=Phyra95090;constitutive=1;ensembl_phase=2;rank=5 scaffold_30 . exon 455266 455307 . + . ID=Phyra95090.6;Parent=Phyra95090;constitutive=1;rank=6 scaffold_30 . exon 455382 455533 . + . ID=Phyra95090.7;Parent=Phyra95090;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_30 . exon 455675 455789 . + . ID=Phyra95090.8;Parent=Phyra95090;constitutive=1;ensembl_phase=2;rank=8 scaffold_30 . exon 455979 456142 . + . ID=Phyra95090.9;Parent=Phyra95090;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_30 . repeat_region 464790 464840 . ? . description=trf scaffold_30 . repeat_region 471352 471385 . ? . description=trf scaffold_30 . exon 463303 463681 . + . ID=Phyra78321.2;Parent=Phyra78321;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . exon 463761 464300 . + . ID=Phyra78321.3;Parent=Phyra78321;constitutive=1;rank=3 scaffold_30 ensembl protein_coding_gene 464580 466388 . - . ID=Phyra78322;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000127;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 464580 466388 . - . ID=Phyra78322;Parent=Phyra78322;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 464580 466388 . - 0 ID=Phyra78322;Parent=Phyra78322;rank=1 scaffold_30 . exon 464580 466388 . - . ID=Phyra78322.1;Parent=Phyra78322;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 468387 472674 . + . ID=Phyra78323;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000128;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 468387 472674 . + . ID=Phyra78323;Parent=Phyra78323;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 468387 468814 . + 0 ID=Phyra78323;Parent=Phyra78323;rank=1 scaffold_30 . exon 468387 468814 . + . ID=Phyra78323.1;Parent=Phyra78323;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 468882 469474 . + 0 ID=Phyra78323;Parent=Phyra78323;rank=2 scaffold_30 . exon 468882 469474 . + . ID=Phyra78323.2;Parent=Phyra78323;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 469571 469682 . + 0 ID=Phyra78323;Parent=Phyra78323;rank=3 scaffold_30 . exon 469571 469682 . + . ID=Phyra78323.3;Parent=Phyra78323;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_30 . CDS 470091 472674 . + 0 ID=Phyra78323;Parent=Phyra78323;rank=4 scaffold_30 . exon 470091 472674 . + . ID=Phyra78323.4;Parent=Phyra78323;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . repeat_region 478055 478073 . ? . description=dust scaffold_30 ensembl protein_coding_gene 472881 473710 . + . ID=Phyra78324;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000129;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 472881 473710 . + . ID=Phyra78324;Parent=Phyra78324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 472881 473120 . + 0 ID=Phyra78324;Parent=Phyra78324;rank=1 scaffold_30 . exon 472881 473120 . + . ID=Phyra78324.1;Parent=Phyra78324;constitutive=1;rank=1 scaffold_30 . CDS 473191 473315 . + 0 ID=Phyra78324;Parent=Phyra78324;rank=2 scaffold_30 . exon 473191 473315 . + . ID=Phyra78324.2;Parent=Phyra78324;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 473551 473710 . + 0 ID=Phyra78324;Parent=Phyra78324;rank=3 scaffold_30 . exon 473551 473710 . + . ID=Phyra78324.3;Parent=Phyra78324;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 ensembl protein_coding_gene 474150 475295 . - . ID=Phyra78325;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000130;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 474150 475295 . - . ID=Phyra78325;Parent=Phyra78325;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 474150 474519 . - 0 ID=Phyra78325;Parent=Phyra78325;rank=5 scaffold_30 . exon 474150 474519 . - . ID=Phyra78325.5;Parent=Phyra78325;constitutive=1;ensembl_phase=2;rank=5 scaffold_30 . CDS 474583 474814 . - 0 ID=Phyra78325;Parent=Phyra78325;rank=4 scaffold_30 . exon 474583 474814 . - . ID=Phyra78325.4;Parent=Phyra78325;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_30 . CDS 474886 474964 . - 0 ID=Phyra78325;Parent=Phyra78325;rank=3 scaffold_30 . exon 474886 474964 . - . ID=Phyra78325.3;Parent=Phyra78325;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . CDS 475029 475072 . - 0 ID=Phyra78325;Parent=Phyra78325;rank=2 scaffold_30 . exon 475029 475072 . - . ID=Phyra78325.2;Parent=Phyra78325;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 475139 475295 . - 0 ID=Phyra78325;Parent=Phyra78325;rank=1 scaffold_30 . exon 475139 475295 . - . ID=Phyra78325.1;Parent=Phyra78325;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . biological_region 483985 483989 0.999 + . logic_name=eponine scaffold_30 . repeat_region 491404 491551 . ? . description=trf scaffold_30 . biological_region 492529 492537 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 491535 493930 . - . ID=Phyra78326;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000131;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 491535 493930 . - . ID=Phyra78326;Parent=Phyra78326;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 491535 492781 . - 0 ID=Phyra78326;Parent=Phyra78326;rank=2 scaffold_30 . exon 491535 492781 . - . ID=Phyra78326.2;Parent=Phyra78326;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 492949 493930 . - 0 ID=Phyra78326;Parent=Phyra78326;rank=1 scaffold_30 . repeat_region 492869 492918 . ? . description=dust scaffold_30 . repeat_region 494160 495212 . ? . description=dust scaffold_30 . repeat_region 496412 496461 . ? . description=dust scaffold_30 . repeat_region 498236 498243 . ? . description=dust scaffold_30 . repeat_region 501180 501199 . ? . description=dust scaffold_30 . exon 492949 493930 . - . ID=Phyra78326.1;Parent=Phyra78326;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 498489 498982 . + . ID=Phyra78327;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000132;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 498489 498982 . + . ID=Phyra78327;Parent=Phyra78327;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 498489 498518 . + 0 ID=Phyra78327;Parent=Phyra78327;rank=1 scaffold_30 . exon 498489 498518 . + . ID=Phyra78327.1;Parent=Phyra78327;constitutive=1;rank=1 scaffold_30 . CDS 498636 498896 . + 0 ID=Phyra78327;Parent=Phyra78327;rank=2 scaffold_30 . exon 498636 498896 . + . ID=Phyra78327.2;Parent=Phyra78327;constitutive=1;rank=2 scaffold_30 . CDS 498932 498982 . + 0 ID=Phyra78327;Parent=Phyra78327;rank=3 scaffold_30 . exon 498932 498982 . + . ID=Phyra78327.3;Parent=Phyra78327;constitutive=1;rank=3 scaffold_30 ensembl protein_coding_gene 501795 502853 . - . ID=Phyra78328;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000133;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 501795 502853 . - . ID=Phyra78328;Parent=Phyra78328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 501795 502853 . - 0 ID=Phyra78328;Parent=Phyra78328;rank=1 scaffold_30 . exon 501795 502853 . - . ID=Phyra78328.1;Parent=Phyra78328;constitutive=1;rank=1 scaffold_30 . repeat_region 511184 514783 . ? . description=dust scaffold_30 . biological_region 515524 515526 0.999 + . logic_name=eponine scaffold_30 . repeat_region 517853 517984 . ? . description=dust scaffold_30 . biological_region 520344 520345 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 519141 521757 . - . ID=Phyra78329;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_30000134;logic_name=jgi_phyra1 scaffold_30 ensembl transcript 519141 521757 . - . ID=Phyra78329;Parent=Phyra78329;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_30 . CDS 519141 519488 . - 0 ID=Phyra78329;Parent=Phyra78329;rank=4 scaffold_30 . exon 519141 519488 . - . ID=Phyra78329.4;Parent=Phyra78329;constitutive=1;rank=4 scaffold_30 . CDS 519582 520431 . - 0 ID=Phyra78329;Parent=Phyra78329;rank=3 scaffold_30 . exon 519582 520431 . - . ID=Phyra78329.3;Parent=Phyra78329;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 520709 521322 . - 0 ID=Phyra78329;Parent=Phyra78329;rank=2 scaffold_30 . exon 520709 521322 . - . ID=Phyra78329.2;Parent=Phyra78329;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 521512 521757 . - 0 ID=Phyra78329;Parent=Phyra78329;rank=1 scaffold_30 . exon 521512 521757 . - . ID=Phyra78329.1;Parent=Phyra78329;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_29 1 529199 scaffold_29 . repeat_region 2227 2234 . ? . description=dust scaffold_29 . repeat_region 6592 6599 . ? . description=dust scaffold_29 . repeat_region 6602 6615 . ? . description=dust scaffold_29 . repeat_region 6708 6720 . ? . description=dust scaffold_29 . biological_region 6878 6881 0.999 - . logic_name=eponine scaffold_29 . repeat_region 19817 19933 . + . description=GypsyPi-1c_I-int scaffold_29 . repeat_region 20413 20462 . ? . description=dust scaffold_29 . biological_region 20647 20651 0.999 + . logic_name=eponine scaffold_29 . repeat_region 21514 21563 . ? . description=dust scaffold_29 . repeat_region 22906 22955 . ? . description=dust scaffold_29 . biological_region 24424 24425 0.999 + . logic_name=eponine scaffold_29 . repeat_region 27427 27451 . ? . description=dust scaffold_29 . repeat_region 28294 29617 . ? . description=dust scaffold_29 ensembl protein_coding_gene 24027 25085 . - . ID=Phyra78073;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000001;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 24027 25085 . - . ID=Phyra78073;Parent=Phyra78073;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 24027 24109 . - 0 ID=Phyra78073;Parent=Phyra78073;rank=2 scaffold_29 . exon 24027 24109 . - . ID=Phyra78073.2;Parent=Phyra78073;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 24134 25085 . - 0 ID=Phyra78073;Parent=Phyra78073;rank=1 scaffold_29 . exon 24134 25085 . - . ID=Phyra78073.1;Parent=Phyra78073;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 ensembl protein_coding_gene 35593 39302 . - . ID=Phyra78074;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000002;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 35593 39302 . - . ID=Phyra78074;Parent=Phyra78074;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 35593 36378 . - 0 ID=Phyra78074;Parent=Phyra78074;rank=4 scaffold_29 . exon 35593 36378 . - . ID=Phyra78074.4;Parent=Phyra78074;constitutive=1;rank=4 scaffold_29 . CDS 36402 38054 . - 0 ID=Phyra78074;Parent=Phyra78074;rank=3 scaffold_29 . exon 36402 38054 . - . ID=Phyra78074.3;Parent=Phyra78074;constitutive=1;rank=3 scaffold_29 . CDS 38346 38649 . - 0 ID=Phyra78074;Parent=Phyra78074;rank=2 scaffold_29 . exon 38346 38649 . - . ID=Phyra78074.2;Parent=Phyra78074;constitutive=1;ensembl_phase=2;rank=2 scaffold_29 . CDS 38749 39302 . - 0 ID=Phyra78074;Parent=Phyra78074;rank=1 scaffold_29 . exon 38749 39302 . - . ID=Phyra78074.1;Parent=Phyra78074;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . repeat_region 41280 41294 . ? . description=dust scaffold_29 . repeat_region 41296 41305 . ? . description=dust scaffold_29 . repeat_region 45883 45890 . ? . description=dust scaffold_29 . repeat_region 46638 46681 . ? . description=trf scaffold_29 . biological_region 46864 46868 0.999 + . logic_name=eponine scaffold_29 . biological_region 49863 49865 0.999 + . logic_name=eponine scaffold_29 ensembl protein_coding_gene 48634 50983 . + . ID=Phyra78075;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000003;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 48634 50983 . + . ID=Phyra78075;Parent=Phyra78075;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 48634 48699 . + 0 ID=Phyra78075;Parent=Phyra78075;rank=1 scaffold_29 . exon 48634 48699 . + . ID=Phyra78075.1;Parent=Phyra78075;constitutive=1;rank=1 scaffold_29 . CDS 48849 49519 . + 0 ID=Phyra78075;Parent=Phyra78075;rank=2 scaffold_29 . exon 48849 49519 . + . ID=Phyra78075.2;Parent=Phyra78075;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_29 . CDS 49681 49834 . + 0 ID=Phyra78075;Parent=Phyra78075;rank=3 scaffold_29 . exon 49681 49834 . + . ID=Phyra78075.3;Parent=Phyra78075;constitutive=1;ensembl_phase=2;rank=3 scaffold_29 . CDS 50141 50242 . + 0 ID=Phyra78075;Parent=Phyra78075;rank=4 scaffold_29 . CDS 50265 50374 . + 0 ID=Phyra78075;Parent=Phyra78075;rank=5 scaffold_29 . CDS 50416 50983 . + 0 ID=Phyra78075;Parent=Phyra78075;rank=6 scaffold_29 . repeat_region 55086 55272 . + . description=GypsyPi-1c_LTR scaffold_29 ensembl protein_coding_gene 51769 51900 . + . ID=Phyra46583;biotype=protein_coding;external_name=gwEuk.29.123.1;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 51769 51900 . + . ID=Phyra46583;Parent=Phyra46583;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 51769 51900 . + 0 ID=Phyra46583;Parent=Phyra46583;rank=1 scaffold_29 . exon 51769 51900 . + . ID=Phyra46583.1;Parent=Phyra46583;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 52252 52608 . + . ID=Phyra46584;biotype=protein_coding;external_name=gwEuk.29.124.1;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 52252 52608 . + . ID=Phyra46584;Parent=Phyra46584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 52252 52608 . + 0 ID=Phyra46584;Parent=Phyra46584;rank=1 scaffold_29 . exon 52252 52608 . + . ID=Phyra46584.1;Parent=Phyra46584;constitutive=1;rank=1 scaffold_29 . exon 50141 50242 . + . ID=Phyra78075.4;Parent=Phyra78075;constitutive=1;rank=4 scaffold_29 . exon 50265 50374 . + . ID=Phyra78075.5;Parent=Phyra78075;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_29 . exon 50416 50983 . + . ID=Phyra78075.6;Parent=Phyra78075;constitutive=1;ensembl_phase=2;rank=6 scaffold_29 . repeat_region 61262 61454 . + . description=GypsyPi-1c_I-int scaffold_29 . repeat_region 61613 61685 . + . description=GypsyPi-1c_I-int scaffold_29 . repeat_region 61663 61768 . + . description=GypsyPi-1c_I-int scaffold_29 . repeat_region 61823 61899 . + . description=GypsyPi-1c_I-int scaffold_29 . biological_region 67274 67275 0.999 + . logic_name=eponine scaffold_29 ensembl protein_coding_gene 63984 65300 . + . ID=Phyra78076;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000004;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 63984 65300 . + . ID=Phyra78076;Parent=Phyra78076;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 63984 65300 . + 0 ID=Phyra78076;Parent=Phyra78076;rank=1 scaffold_29 . exon 63984 65300 . + . ID=Phyra78076.1;Parent=Phyra78076;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 65752 67053 . + . ID=Phyra78077;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000005;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 65752 67053 . + . ID=Phyra78077;Parent=Phyra78077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 65752 67053 . + 0 ID=Phyra78077;Parent=Phyra78077;rank=1 scaffold_29 . exon 65752 67053 . + . ID=Phyra78077.1;Parent=Phyra78077;constitutive=1;rank=1 scaffold_29 . repeat_region 79042 79167 . ? . description=dust scaffold_29 ensembl protein_coding_gene 77370 77798 . - . ID=Phyra71582;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_29000001;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 77370 77798 . - . ID=Phyra71582;Parent=Phyra71582;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 77370 77798 . - 0 ID=Phyra71582;Parent=Phyra71582;rank=1 scaffold_29 . exon 77370 77798 . - . ID=Phyra71582.1;Parent=Phyra71582;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 72208 73563 . - . ID=Phyra78078;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000006;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 72208 73563 . - . ID=Phyra78078;Parent=Phyra78078;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 72208 73563 . - 0 ID=Phyra78078;Parent=Phyra78078;rank=1 scaffold_29 . exon 72208 73563 . - . ID=Phyra78078.1;Parent=Phyra78078;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 75992 77175 . + . ID=Phyra78079;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000007;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 75992 77175 . + . ID=Phyra78079;Parent=Phyra78079;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 75992 76053 . + 0 ID=Phyra78079;Parent=Phyra78079;rank=1 scaffold_29 . exon 75992 76053 . + . ID=Phyra78079.1;Parent=Phyra78079;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . CDS 76128 76732 . + 0 ID=Phyra78079;Parent=Phyra78079;rank=2 scaffold_29 . exon 76128 76732 . + . ID=Phyra78079.2;Parent=Phyra78079;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_29 . CDS 76793 77175 . + 0 ID=Phyra78079;Parent=Phyra78079;rank=3 scaffold_29 . exon 76793 77175 . + . ID=Phyra78079.3;Parent=Phyra78079;constitutive=1;ensembl_phase=1;rank=3 scaffold_29 ensembl protein_coding_gene 78160 82360 . + . ID=Phyra78081;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000009;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 78160 82360 . + . ID=Phyra78081;Parent=Phyra78081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 78160 78994 . + 0 ID=Phyra78081;Parent=Phyra78081;rank=1 scaffold_29 . exon 78160 78994 . + . ID=Phyra78081.1;Parent=Phyra78081;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . CDS 79346 79544 . + 0 ID=Phyra78081;Parent=Phyra78081;rank=2 scaffold_29 . exon 79346 79544 . + . ID=Phyra78081.2;Parent=Phyra78081;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_29 . CDS 79635 79759 . + 0 ID=Phyra78081;Parent=Phyra78081;rank=3 scaffold_29 . exon 79635 79759 . + . ID=Phyra78081.3;Parent=Phyra78081;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_29 . CDS 79916 80021 . + 0 ID=Phyra78081;Parent=Phyra78081;rank=4 scaffold_29 . CDS 80136 80619 . + 0 ID=Phyra78081;Parent=Phyra78081;rank=5 scaffold_29 . CDS 80830 82181 . + 0 ID=Phyra78081;Parent=Phyra78081;rank=6 scaffold_29 . CDS 82219 82360 . + 0 ID=Phyra78081;Parent=Phyra78081;rank=7 scaffold_29 . biological_region 83155 83160 0.999 + . logic_name=eponine scaffold_29 . biological_region 84193 84195 0.999 - . logic_name=eponine scaffold_29 . biological_region 85251 85254 0.999 - . logic_name=eponine scaffold_29 . biological_region 86805 86806 0.999 + . logic_name=eponine scaffold_29 . exon 79916 80021 . + . ID=Phyra78081.4;Parent=Phyra78081;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_29 . exon 80136 80619 . + . ID=Phyra78081.5;Parent=Phyra78081;constitutive=1;ensembl_phase=2;rank=5 scaffold_29 . exon 80830 82181 . + . ID=Phyra78081.6;Parent=Phyra78081;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_29 . exon 82219 82360 . + . ID=Phyra78081.7;Parent=Phyra78081;constitutive=1;ensembl_phase=2;rank=7 scaffold_29 ensembl protein_coding_gene 84972 86606 . + . ID=Phyra78083;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000011;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 84972 86606 . + . ID=Phyra78083;Parent=Phyra78083;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 84972 86606 . + 0 ID=Phyra78083;Parent=Phyra78083;rank=1 scaffold_29 . exon 84972 86606 . + . ID=Phyra78083.1;Parent=Phyra78083;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 87118 90713 . - . ID=Phyra78084;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000012;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 87118 90713 . - . ID=Phyra78084;Parent=Phyra78084;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 87118 87729 . - 0 ID=Phyra78084;Parent=Phyra78084;rank=3 scaffold_29 . exon 87118 87729 . - . ID=Phyra78084.3;Parent=Phyra78084;constitutive=1;rank=3 scaffold_29 . CDS 87799 87940 . - 0 ID=Phyra78084;Parent=Phyra78084;rank=2 scaffold_29 . exon 87799 87940 . - . ID=Phyra78084.2;Parent=Phyra78084;constitutive=1;ensembl_phase=2;rank=2 scaffold_29 . CDS 88018 90713 . - 0 ID=Phyra78084;Parent=Phyra78084;rank=1 scaffold_29 . exon 88018 90713 . - . ID=Phyra78084.1;Parent=Phyra78084;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 ensembl protein_coding_gene 82759 83706 . + . ID=Phyra95006;biotype=protein_coding;external_name=C_scaffold_29000003;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 82759 83706 . + . ID=Phyra95006;Parent=Phyra95006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 82759 83706 . + 0 ID=Phyra95006;Parent=Phyra95006;rank=1 scaffold_29 . exon 82759 83706 . + . ID=Phyra95006.1;Parent=Phyra95006;constitutive=1;rank=1 scaffold_29 . repeat_region 95750 95777 . ? . description=trf scaffold_29 ensembl protein_coding_gene 91120 91764 . + . ID=Phyra78085;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000013;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 91120 91764 . + . ID=Phyra78085;Parent=Phyra78085;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 91120 91146 . + 0 ID=Phyra78085;Parent=Phyra78085;rank=1 scaffold_29 . exon 91120 91146 . + . ID=Phyra78085.1;Parent=Phyra78085;constitutive=1;rank=1 scaffold_29 . CDS 91220 91644 . + 0 ID=Phyra78085;Parent=Phyra78085;rank=2 scaffold_29 . exon 91220 91644 . + . ID=Phyra78085.2;Parent=Phyra78085;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_29 . CDS 91722 91764 . + 0 ID=Phyra78085;Parent=Phyra78085;rank=3 scaffold_29 . exon 91722 91764 . + . ID=Phyra78085.3;Parent=Phyra78085;constitutive=1;ensembl_phase=2;rank=3 scaffold_29 ensembl protein_coding_gene 91811 92557 . - . ID=Phyra95009;biotype=protein_coding;external_name=C_scaffold_29000006;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 91811 92557 . - . ID=Phyra95009;Parent=Phyra95009;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 91811 91836 . - 0 ID=Phyra95009;Parent=Phyra95009;rank=3 scaffold_29 . exon 91811 91836 . - . ID=Phyra95009.3;Parent=Phyra95009;constitutive=1;ensembl_phase=1;rank=3 scaffold_29 . CDS 91942 92082 . - 0 ID=Phyra95009;Parent=Phyra95009;rank=2 scaffold_29 . exon 91942 92082 . - . ID=Phyra95009.2;Parent=Phyra95009;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 92254 92557 . - 0 ID=Phyra95009;Parent=Phyra95009;rank=1 scaffold_29 . exon 92254 92557 . - . ID=Phyra95009.1;Parent=Phyra95009;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . repeat_region 104219 104235 . ? . description=dust scaffold_29 . repeat_region 105053 105066 . ? . description=dust scaffold_29 . repeat_region 106218 106229 . ? . description=dust scaffold_29 . biological_region 110530 110533 0.999 - . logic_name=eponine scaffold_29 . biological_region 116821 116822 0.999 - . logic_name=eponine scaffold_29 . repeat_region 128518 128533 . ? . description=dust scaffold_29 . repeat_region 128899 128916 . ? . description=dust scaffold_29 ensembl protein_coding_gene 125123 126803 . + . ID=Phyra78086;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000014;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 125123 126803 . + . ID=Phyra78086;Parent=Phyra78086;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 125123 125890 . + 0 ID=Phyra78086;Parent=Phyra78086;rank=1 scaffold_29 . exon 125123 125890 . + . ID=Phyra78086.1;Parent=Phyra78086;constitutive=1;rank=1 scaffold_29 . CDS 125964 126803 . + 0 ID=Phyra78086;Parent=Phyra78086;rank=2 scaffold_29 . exon 125964 126803 . + . ID=Phyra78086.2;Parent=Phyra78086;constitutive=1;rank=2 scaffold_29 . biological_region 136587 136590 0.999 - . logic_name=eponine scaffold_29 . biological_region 136895 136900 0.999 - . logic_name=eponine scaffold_29 . biological_region 137299 137301 0.999 - . logic_name=eponine scaffold_29 . biological_region 137685 137685 0.999 - . logic_name=eponine scaffold_29 . biological_region 137719 137722 0.999 - . logic_name=eponine scaffold_29 ensembl protein_coding_gene 130073 132411 . + . ID=Phyra78087;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000015;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 130073 132411 . + . ID=Phyra78087;Parent=Phyra78087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 130073 130758 . + 0 ID=Phyra78087;Parent=Phyra78087;rank=1 scaffold_29 . exon 130073 130758 . + . ID=Phyra78087.1;Parent=Phyra78087;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . CDS 130997 131052 . + 0 ID=Phyra78087;Parent=Phyra78087;rank=2 scaffold_29 . exon 130997 131052 . + . ID=Phyra78087.2;Parent=Phyra78087;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_29 . CDS 131421 132295 . + 0 ID=Phyra78087;Parent=Phyra78087;rank=3 scaffold_29 . exon 131421 132295 . + . ID=Phyra78087.3;Parent=Phyra78087;constitutive=1;ensembl_phase=1;rank=3 scaffold_29 . CDS 132406 132411 . + 0 ID=Phyra78087;Parent=Phyra78087;rank=4 scaffold_29 . exon 132406 132411 . + . ID=Phyra78087.4;Parent=Phyra78087;constitutive=1;rank=4 scaffold_29 ensembl protein_coding_gene 134505 135362 . - . ID=Phyra78088;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000016;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 134505 135362 . - . ID=Phyra78088;Parent=Phyra78088;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 134505 134900 . - 0 ID=Phyra78088;Parent=Phyra78088;rank=2 scaffold_29 . exon 134505 134900 . - . ID=Phyra78088.2;Parent=Phyra78088;constitutive=1;rank=2 scaffold_29 . CDS 134973 135362 . - 0 ID=Phyra78088;Parent=Phyra78088;rank=1 scaffold_29 . exon 134973 135362 . - . ID=Phyra78088.1;Parent=Phyra78088;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 137184 138946 . + . ID=Phyra78089;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000017;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 137184 138946 . + . ID=Phyra78089;Parent=Phyra78089;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 137184 137396 . + 0 ID=Phyra78089;Parent=Phyra78089;rank=1 scaffold_29 . exon 137184 137396 . + . ID=Phyra78089.1;Parent=Phyra78089;constitutive=1;rank=1 scaffold_29 . CDS 137429 138946 . + 0 ID=Phyra78089;Parent=Phyra78089;rank=2 scaffold_29 . exon 137429 138946 . + . ID=Phyra78089.2;Parent=Phyra78089;constitutive=1;rank=2 scaffold_29 . repeat_region 140101 140120 . ? . description=trf scaffold_29 . repeat_region 147480 147504 . ? . description=trf scaffold_29 ensembl protein_coding_gene 142665 143540 . + . ID=Phyra78090;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000018;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 142665 143540 . + . ID=Phyra78090;Parent=Phyra78090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 142665 143540 . + 0 ID=Phyra78090;Parent=Phyra78090;rank=1 scaffold_29 . exon 142665 143540 . + . ID=Phyra78090.1;Parent=Phyra78090;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 144919 146052 . + . ID=Phyra78091;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000019;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 144919 146052 . + . ID=Phyra78091;Parent=Phyra78091;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 144919 146052 . + 0 ID=Phyra78091;Parent=Phyra78091;rank=1 scaffold_29 . exon 144919 146052 . + . ID=Phyra78091.1;Parent=Phyra78091;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 146175 147584 . - . ID=Phyra78092;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000020;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 146175 147584 . - . ID=Phyra78092;Parent=Phyra78092;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 146175 147584 . - 0 ID=Phyra78092;Parent=Phyra78092;rank=1 scaffold_29 . exon 146175 147584 . - . ID=Phyra78092.1;Parent=Phyra78092;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 147877 149037 . - . ID=Phyra78093;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000021;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 147877 149037 . - . ID=Phyra78093;Parent=Phyra78093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 147877 149037 . - 0 ID=Phyra78093;Parent=Phyra78093;rank=1 scaffold_29 . exon 147877 149037 . - . ID=Phyra78093.1;Parent=Phyra78093;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 140434 141118 . + . ID=Phyra95011;biotype=protein_coding;external_name=C_scaffold_29000008;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 140434 141118 . + . ID=Phyra95011;Parent=Phyra95011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 140434 141054 . + 0 ID=Phyra95011;Parent=Phyra95011;rank=1 scaffold_29 . exon 140434 141054 . + . ID=Phyra95011.1;Parent=Phyra95011;constitutive=1;rank=1 scaffold_29 . CDS 141104 141118 . + 0 ID=Phyra95011;Parent=Phyra95011;rank=2 scaffold_29 . exon 141104 141118 . + . ID=Phyra95011.2;Parent=Phyra95011;constitutive=1;rank=2 scaffold_29 . repeat_region 153496 153503 . ? . description=dust scaffold_29 ensembl protein_coding_gene 158866 160041 . - . ID=Phyra78095;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000023;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 158866 160041 . - . ID=Phyra78095;Parent=Phyra78095;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 158866 158957 . - 0 ID=Phyra78095;Parent=Phyra78095;rank=3 scaffold_29 . exon 158866 158957 . - . ID=Phyra78095.3;Parent=Phyra78095;constitutive=1;ensembl_phase=1;rank=3 scaffold_29 . CDS 158992 159771 . - 0 ID=Phyra78095;Parent=Phyra78095;rank=2 scaffold_29 . exon 158992 159771 . - . ID=Phyra78095.2;Parent=Phyra78095;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 160017 160041 . - 0 ID=Phyra78095;Parent=Phyra78095;rank=1 scaffold_29 ensembl protein_coding_gene 156806 158292 . + . ID=Phyra95015;biotype=protein_coding;external_name=C_scaffold_29000012;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 156806 158292 . + . ID=Phyra95015;Parent=Phyra95015;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 156806 156829 . + 0 ID=Phyra95015;Parent=Phyra95015;rank=1 scaffold_29 . exon 156806 156829 . + . ID=Phyra95015.1;Parent=Phyra95015;constitutive=1;rank=1 scaffold_29 . CDS 157087 157461 . + 0 ID=Phyra95015;Parent=Phyra95015;rank=2 scaffold_29 . exon 157087 157461 . + . ID=Phyra95015.2;Parent=Phyra95015;constitutive=1;rank=2 scaffold_29 . CDS 157531 157677 . + 0 ID=Phyra95015;Parent=Phyra95015;rank=3 scaffold_29 . exon 157531 157677 . + . ID=Phyra95015.3;Parent=Phyra95015;constitutive=1;rank=3 scaffold_29 . CDS 157756 158160 . + 0 ID=Phyra95015;Parent=Phyra95015;rank=4 scaffold_29 . exon 157756 158160 . + . ID=Phyra95015.4;Parent=Phyra95015;constitutive=1;rank=4 scaffold_29 . CDS 158269 158292 . + 0 ID=Phyra95015;Parent=Phyra95015;rank=5 scaffold_29 . exon 158269 158292 . + . ID=Phyra95015.5;Parent=Phyra95015;constitutive=1;rank=5 scaffold_29 . biological_region 163830 163831 0.999 - . logic_name=eponine scaffold_29 . biological_region 164680 164683 0.999 - . logic_name=eponine scaffold_29 . biological_region 165804 165808 0.999 + . logic_name=eponine scaffold_29 ensembl protein_coding_gene 165749 168579 . - . ID=Phyra71584;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_29000003;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 165749 168579 . - . ID=Phyra71584;Parent=Phyra71584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 165749 165940 . - 0 ID=Phyra71584;Parent=Phyra71584;rank=3 scaffold_29 . exon 165749 165940 . - . ID=Phyra71584.3;Parent=Phyra71584;constitutive=1;rank=3 scaffold_29 . CDS 167650 168389 . - 0 ID=Phyra71584;Parent=Phyra71584;rank=2 scaffold_29 . exon 167650 168389 . - . ID=Phyra71584.2;Parent=Phyra71584;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 168471 168579 . - 0 ID=Phyra71584;Parent=Phyra71584;rank=1 scaffold_29 . exon 168471 168579 . - . ID=Phyra71584.1;Parent=Phyra71584;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . exon 160017 160041 . - . ID=Phyra78095.1;Parent=Phyra78095;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 ensembl protein_coding_gene 162021 162437 . + . ID=Phyra78096;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000024;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 162021 162437 . + . ID=Phyra78096;Parent=Phyra78096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 162021 162437 . + 0 ID=Phyra78096;Parent=Phyra78096;rank=1 scaffold_29 . exon 162021 162437 . + . ID=Phyra78096.1;Parent=Phyra78096;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 163664 165412 . - . ID=Phyra78097;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000025;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 163664 165412 . - . ID=Phyra78097;Parent=Phyra78097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 163664 164774 . - 0 ID=Phyra78097;Parent=Phyra78097;rank=4 scaffold_29 . exon 163664 164774 . - . ID=Phyra78097.4;Parent=Phyra78097;constitutive=1;ensembl_phase=2;rank=4 scaffold_29 . CDS 164838 165070 . - 0 ID=Phyra78097;Parent=Phyra78097;rank=3 scaffold_29 . exon 164838 165070 . - . ID=Phyra78097.3;Parent=Phyra78097;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_29 . CDS 165158 165238 . - 0 ID=Phyra78097;Parent=Phyra78097;rank=2 scaffold_29 . exon 165158 165238 . - . ID=Phyra78097.2;Parent=Phyra78097;constitutive=1;rank=2 scaffold_29 . CDS 165359 165412 . - 0 ID=Phyra78097;Parent=Phyra78097;rank=1 scaffold_29 . exon 165359 165412 . - . ID=Phyra78097.1;Parent=Phyra78097;constitutive=1;rank=1 scaffold_29 . repeat_region 177523 177572 . ? . description=trf scaffold_29 . repeat_region 177531 177572 . ? . description=trf scaffold_29 ensembl protein_coding_gene 169862 171610 . + . ID=Phyra78099;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000027;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 169862 171610 . + . ID=Phyra78099;Parent=Phyra78099;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 169862 171610 . + 0 ID=Phyra78099;Parent=Phyra78099;rank=1 scaffold_29 . exon 169862 171610 . + . ID=Phyra78099.1;Parent=Phyra78099;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 171887 173199 . + . ID=Phyra78100;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000028;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 171887 173199 . + . ID=Phyra78100;Parent=Phyra78100;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 171887 172399 . + 0 ID=Phyra78100;Parent=Phyra78100;rank=1 scaffold_29 . exon 171887 172399 . + . ID=Phyra78100.1;Parent=Phyra78100;constitutive=1;rank=1 scaffold_29 . CDS 172465 173199 . + 0 ID=Phyra78100;Parent=Phyra78100;rank=2 scaffold_29 . exon 172465 173199 . + . ID=Phyra78100.2;Parent=Phyra78100;constitutive=1;rank=2 scaffold_29 ensembl protein_coding_gene 177293 177985 . - . ID=Phyra78101;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000029;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 177293 177985 . - . ID=Phyra78101;Parent=Phyra78101;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 177293 177985 . - 0 ID=Phyra78101;Parent=Phyra78101;rank=1 scaffold_29 . exon 177293 177985 . - . ID=Phyra78101.1;Parent=Phyra78101;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 178297 183135 . - . ID=Phyra78102;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000030;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 178297 183135 . - . ID=Phyra78102;Parent=Phyra78102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 178297 183135 . - 0 ID=Phyra78102;Parent=Phyra78102;rank=1 scaffold_29 . exon 178297 183135 . - . ID=Phyra78102.1;Parent=Phyra78102;constitutive=1;rank=1 scaffold_29 . biological_region 185338 185338 0.999 + . logic_name=eponine scaffold_29 . biological_region 185409 185410 0.999 + . logic_name=eponine scaffold_29 . repeat_region 189025 189119 . ? . description=dust scaffold_29 . repeat_region 189309 189364 . ? . description=dust scaffold_29 ensembl protein_coding_gene 183538 189766 . - . ID=Phyra78103;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000031;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 183538 189766 . - . ID=Phyra78103;Parent=Phyra78103;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 183538 183676 . - 0 ID=Phyra78103;Parent=Phyra78103;rank=11 scaffold_29 . exon 183538 183676 . - . ID=Phyra78103.11;Parent=Phyra78103;constitutive=1;ensembl_phase=2;rank=11 scaffold_29 . CDS 183749 184044 . - 0 ID=Phyra78103;Parent=Phyra78103;rank=10 scaffold_29 . exon 183749 184044 . - . ID=Phyra78103.10;Parent=Phyra78103;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_29 . CDS 184243 185581 . - 0 ID=Phyra78103;Parent=Phyra78103;rank=9 scaffold_29 . exon 184243 185581 . - . ID=Phyra78103.9;Parent=Phyra78103;constitutive=1;ensembl_phase=2;rank=9 scaffold_29 . CDS 185775 186093 . - 0 ID=Phyra78103;Parent=Phyra78103;rank=8 scaffold_29 . exon 185775 186093 . - . ID=Phyra78103.8;Parent=Phyra78103;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_29 . CDS 186255 186611 . - 0 ID=Phyra78103;Parent=Phyra78103;rank=7 scaffold_29 . exon 186255 186611 . - . ID=Phyra78103.7;Parent=Phyra78103;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_29 . CDS 186645 186684 . - 0 ID=Phyra78103;Parent=Phyra78103;rank=6 scaffold_29 . exon 186645 186684 . - . ID=Phyra78103.6;Parent=Phyra78103;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_29 . CDS 186755 187093 . - 0 ID=Phyra78103;Parent=Phyra78103;rank=5 scaffold_29 . exon 186755 187093 . - . ID=Phyra78103.5;Parent=Phyra78103;constitutive=1;rank=5 scaffold_29 . CDS 187158 187728 . - 0 ID=Phyra78103;Parent=Phyra78103;rank=4 scaffold_29 . exon 187158 187728 . - . ID=Phyra78103.4;Parent=Phyra78103;constitutive=1;ensembl_phase=2;rank=4 scaffold_29 . CDS 187918 188676 . - 0 ID=Phyra78103;Parent=Phyra78103;rank=3 scaffold_29 . exon 187918 188676 . - . ID=Phyra78103.3;Parent=Phyra78103;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_29 . CDS 189176 189541 . - 0 ID=Phyra78103;Parent=Phyra78103;rank=2 scaffold_29 . exon 189176 189541 . - . ID=Phyra78103.2;Parent=Phyra78103;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_29 . CDS 189567 189766 . - 0 ID=Phyra78103;Parent=Phyra78103;rank=1 scaffold_29 . exon 189567 189766 . - . ID=Phyra78103.1;Parent=Phyra78103;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . repeat_region 196338 196423 . ? . description=trf scaffold_29 . repeat_region 196377 196422 . ? . description=trf scaffold_29 ensembl protein_coding_gene 190870 192338 . + . ID=Phyra78104;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000032;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 190870 192338 . + . ID=Phyra78104;Parent=Phyra78104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 190870 191430 . + 0 ID=Phyra78104;Parent=Phyra78104;rank=1 scaffold_29 . exon 190870 191430 . + . ID=Phyra78104.1;Parent=Phyra78104;constitutive=1;rank=1 scaffold_29 . CDS 191495 191833 . + 0 ID=Phyra78104;Parent=Phyra78104;rank=2 scaffold_29 . exon 191495 191833 . + . ID=Phyra78104.2;Parent=Phyra78104;constitutive=1;rank=2 scaffold_29 . CDS 191904 192338 . + 0 ID=Phyra78104;Parent=Phyra78104;rank=3 scaffold_29 . exon 191904 192338 . + . ID=Phyra78104.3;Parent=Phyra78104;constitutive=1;rank=3 scaffold_29 ensembl protein_coding_gene 192665 193200 . + . ID=Phyra78105;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000033;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 192665 193200 . + . ID=Phyra78105;Parent=Phyra78105;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 192665 193069 . + 0 ID=Phyra78105;Parent=Phyra78105;rank=1 scaffold_29 . exon 192665 193069 . + . ID=Phyra78105.1;Parent=Phyra78105;constitutive=1;rank=1 scaffold_29 . CDS 193150 193200 . + 0 ID=Phyra78105;Parent=Phyra78105;rank=2 scaffold_29 . exon 193150 193200 . + . ID=Phyra78105.2;Parent=Phyra78105;constitutive=1;rank=2 scaffold_29 ensembl protein_coding_gene 193388 194859 . - . ID=Phyra78106;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000034;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 193388 194859 . - . ID=Phyra78106;Parent=Phyra78106;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 193388 193822 . - 0 ID=Phyra78106;Parent=Phyra78106;rank=3 scaffold_29 . exon 193388 193822 . - . ID=Phyra78106.3;Parent=Phyra78106;constitutive=1;rank=3 scaffold_29 . CDS 193897 194235 . - 0 ID=Phyra78106;Parent=Phyra78106;rank=2 scaffold_29 . exon 193897 194235 . - . ID=Phyra78106.2;Parent=Phyra78106;constitutive=1;rank=2 scaffold_29 . CDS 194290 194859 . - 0 ID=Phyra78106;Parent=Phyra78106;rank=1 scaffold_29 . exon 194290 194859 . - . ID=Phyra78106.1;Parent=Phyra78106;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 195464 196744 . - . ID=Phyra78107;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000035;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 195464 196744 . - . ID=Phyra78107;Parent=Phyra78107;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 195464 196744 . - 0 ID=Phyra78107;Parent=Phyra78107;rank=1 scaffold_29 . exon 195464 196744 . - . ID=Phyra78107.1;Parent=Phyra78107;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 199673 200953 . - . ID=Phyra78109;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000037;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 199673 200953 . - . ID=Phyra78109;Parent=Phyra78109;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 199673 200953 . - 0 ID=Phyra78109;Parent=Phyra78109;rank=1 scaffold_29 . exon 199673 200953 . - . ID=Phyra78109.1;Parent=Phyra78109;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 197642 199068 . - . ID=Phyra95017;biotype=protein_coding;external_name=C_scaffold_29000014;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 197642 199068 . - . ID=Phyra95017;Parent=Phyra95017;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 197642 197649 . - 0 ID=Phyra95017;Parent=Phyra95017;rank=5 scaffold_29 . exon 197642 197649 . - . ID=Phyra95017.5;Parent=Phyra95017;constitutive=1;ensembl_phase=1;rank=5 scaffold_29 . CDS 197709 198030 . - 0 ID=Phyra95017;Parent=Phyra95017;rank=4 scaffold_29 . exon 197709 198030 . - . ID=Phyra95017.4;Parent=Phyra95017;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_29 . CDS 198106 198444 . - 0 ID=Phyra95017;Parent=Phyra95017;rank=3 scaffold_29 . exon 198106 198444 . - . ID=Phyra95017.3;Parent=Phyra95017;constitutive=1;rank=3 scaffold_29 . CDS 198499 198762 . - 0 ID=Phyra95017;Parent=Phyra95017;rank=2 scaffold_29 . exon 198499 198762 . - . ID=Phyra95017.2;Parent=Phyra95017;constitutive=1;rank=2 scaffold_29 . CDS 198808 199068 . - 0 ID=Phyra95017;Parent=Phyra95017;rank=1 scaffold_29 . exon 198808 199068 . - . ID=Phyra95017.1;Parent=Phyra95017;constitutive=1;rank=1 scaffold_29 . repeat_region 205580 205636 . ? . description=dust scaffold_29 . biological_region 206819 206819 0.999 + . logic_name=eponine scaffold_29 . biological_region 207342 207343 0.999 + . logic_name=eponine scaffold_29 . biological_region 207461 207462 0.999 + . logic_name=eponine scaffold_29 . biological_region 208081 208081 0.999 - . logic_name=eponine scaffold_29 . biological_region 208096 208098 0.999 + . logic_name=eponine scaffold_29 . biological_region 209004 209007 0.999 - . logic_name=eponine scaffold_29 ensembl protein_coding_gene 206615 208408 . - . ID=Phyra78112;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000040;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 206615 208408 . - . ID=Phyra78112;Parent=Phyra78112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 206615 208408 . - 0 ID=Phyra78112;Parent=Phyra78112;rank=1 scaffold_29 . exon 206615 208408 . - . ID=Phyra78112.1;Parent=Phyra78112;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 202232 203827 . + . ID=Phyra95019;biotype=protein_coding;external_name=C_scaffold_29000016;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 202232 203827 . + . ID=Phyra95019;Parent=Phyra95019;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 202232 202810 . + 0 ID=Phyra95019;Parent=Phyra95019;rank=1 scaffold_29 . exon 202232 202810 . + . ID=Phyra95019.1;Parent=Phyra95019;constitutive=1;rank=1 scaffold_29 . CDS 202878 203020 . + 0 ID=Phyra95019;Parent=Phyra95019;rank=2 scaffold_29 . exon 202878 203020 . + . ID=Phyra95019.2;Parent=Phyra95019;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_29 . CDS 203085 203318 . + 0 ID=Phyra95019;Parent=Phyra95019;rank=3 scaffold_29 . exon 203085 203318 . + . ID=Phyra95019.3;Parent=Phyra95019;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_29 . CDS 203404 203827 . + 0 ID=Phyra95019;Parent=Phyra95019;rank=4 scaffold_29 . exon 203404 203827 . + . ID=Phyra95019.4;Parent=Phyra95019;constitutive=1;ensembl_phase=2;rank=4 scaffold_29 ensembl protein_coding_gene 203971 205578 . - . ID=Phyra95021;biotype=protein_coding;external_name=C_scaffold_29000018;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 203971 205578 . - . ID=Phyra95021;Parent=Phyra95021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 203971 205578 . - 0 ID=Phyra95021;Parent=Phyra95021;rank=1 scaffold_29 . exon 203971 205578 . - . ID=Phyra95021.1;Parent=Phyra95021;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 209710 211581 . - . ID=Phyra78113;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000041;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 209710 211581 . - . ID=Phyra78113;Parent=Phyra78113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 209710 211581 . - 0 ID=Phyra78113;Parent=Phyra78113;rank=1 scaffold_29 . exon 209710 211581 . - . ID=Phyra78113.1;Parent=Phyra78113;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 212499 212942 . - . ID=Phyra78114;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000042;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 212499 212942 . - . ID=Phyra78114;Parent=Phyra78114;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 212499 212942 . - 0 ID=Phyra78114;Parent=Phyra78114;rank=1 scaffold_29 . exon 212499 212942 . - . ID=Phyra78114.1;Parent=Phyra78114;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 214151 218032 . + . ID=Phyra95025;biotype=protein_coding;description=Putative elicitin protein RAM3X [Source:UniProtKB/TrEMBL%3BAcc:Q2N093];external_name=C_scaffold_29000022;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 214151 218032 . + . ID=Phyra95025;Parent=Phyra95025;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 214151 214951 . + 0 ID=Phyra95025;Parent=Phyra95025;rank=1 scaffold_29 . exon 214151 214951 . + . ID=Phyra95025.1;Parent=Phyra95025;constitutive=1;rank=1 scaffold_29 . CDS 215155 215158 . + 0 ID=Phyra95025;Parent=Phyra95025;rank=2 scaffold_29 . exon 215155 215158 . + . ID=Phyra95025.2;Parent=Phyra95025;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_29 . CDS 215387 216247 . + 0 ID=Phyra95025;Parent=Phyra95025;rank=3 scaffold_29 . exon 215387 216247 . + . ID=Phyra95025.3;Parent=Phyra95025;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_29 . CDS 217098 217597 . + 0 ID=Phyra95025;Parent=Phyra95025;rank=4 scaffold_29 . exon 217098 217597 . + . ID=Phyra95025.4;Parent=Phyra95025;constitutive=1;ensembl_phase=1;rank=4 scaffold_29 . CDS 217667 218032 . + 0 ID=Phyra95025;Parent=Phyra95025;rank=5 scaffold_29 . exon 217667 218032 . + . ID=Phyra95025.5;Parent=Phyra95025;constitutive=1;rank=5 scaffold_29 ensembl protein_coding_gene 218264 218709 . - . ID=Phyra95026;biotype=protein_coding;external_name=C_scaffold_29000023;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 218264 218709 . - . ID=Phyra95026;Parent=Phyra95026;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 218264 218547 . - 0 ID=Phyra95026;Parent=Phyra95026;rank=2 scaffold_29 . exon 218264 218547 . - . ID=Phyra95026.2;Parent=Phyra95026;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 218581 218707 . - 0 ID=Phyra95026;Parent=Phyra95026;rank=1 scaffold_29 . exon 218581 218709 . - . ID=Phyra95026.1;Parent=Phyra95026;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_29 . repeat_region 220198 232258 . ? . description=dust scaffold_29 . biological_region 233395 233397 0.999 + . logic_name=eponine scaffold_29 . biological_region 234134 234135 0.999 - . logic_name=eponine scaffold_29 . repeat_region 234784 234851 . ? . description=trf scaffold_29 . repeat_region 234998 235038 . ? . description=trf scaffold_29 . repeat_region 235160 235245 . ? . description=trf scaffold_29 . repeat_region 235167 235224 . ? . description=trf scaffold_29 . repeat_region 235167 235250 . ? . description=trf scaffold_29 . repeat_region 236744 236854 . ? . description=trf scaffold_29 . repeat_region 236749 236822 . ? . description=trf scaffold_29 . repeat_region 236759 236861 . ? . description=trf scaffold_29 . repeat_region 236786 236861 . ? . description=trf scaffold_29 . repeat_region 236969 237044 . ? . description=trf scaffold_29 . repeat_region 236983 237023 . ? . description=trf scaffold_29 . repeat_region 237170 237237 . ? . description=trf scaffold_29 . biological_region 237627 237631 0.999 + . logic_name=eponine scaffold_29 ensembl protein_coding_gene 232261 233424 . - . ID=Phyra46469;biotype=protein_coding;external_name=gwEuk.29.9.1;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 232261 233424 . - . ID=Phyra46469;Parent=Phyra46469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 232261 233424 . - 0 ID=Phyra46469;Parent=Phyra46469;rank=1 scaffold_29 . exon 232261 233424 . - . ID=Phyra46469.1;Parent=Phyra46469;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 233824 234107 . - . ID=Phyra46473;biotype=protein_coding;external_name=gwEuk.29.13.1;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 233824 234107 . - . ID=Phyra46473;Parent=Phyra46473;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 233824 233868 . - 0 ID=Phyra46473;Parent=Phyra46473;rank=2 scaffold_29 . exon 233824 233868 . - . ID=Phyra46473.2;Parent=Phyra46473;constitutive=1;rank=2 scaffold_29 . CDS 233946 234107 . - 0 ID=Phyra46473;Parent=Phyra46473;rank=1 scaffold_29 . exon 233946 234107 . - . ID=Phyra46473.1;Parent=Phyra46473;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 234632 236099 . - . ID=Phyra78119;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000047;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 234632 236099 . - . ID=Phyra78119;Parent=Phyra78119;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 234632 235336 . - 0 ID=Phyra78119;Parent=Phyra78119;rank=2 scaffold_29 . exon 234632 235336 . - . ID=Phyra78119.2;Parent=Phyra78119;constitutive=1;rank=2 scaffold_29 . CDS 236097 236099 . - 0 ID=Phyra78119;Parent=Phyra78119;rank=1 scaffold_29 . exon 236097 236099 . - . ID=Phyra78119.1;Parent=Phyra78119;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 236541 238959 . + . ID=Phyra78120;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000048;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 236541 238959 . + . ID=Phyra78120;Parent=Phyra78120;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 236541 237381 . + 0 ID=Phyra78120;Parent=Phyra78120;rank=1 scaffold_29 . exon 236541 237381 . + . ID=Phyra78120.1;Parent=Phyra78120;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . CDS 237669 238249 . + 0 ID=Phyra78120;Parent=Phyra78120;rank=2 scaffold_29 . exon 237669 238249 . + . ID=Phyra78120.2;Parent=Phyra78120;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 238315 238564 . + 0 ID=Phyra78120;Parent=Phyra78120;rank=3 scaffold_29 . exon 238315 238564 . + . ID=Phyra78120.3;Parent=Phyra78120;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_29 . CDS 238847 238959 . + 0 ID=Phyra78120;Parent=Phyra78120;rank=4 scaffold_29 . exon 238847 238959 . + . ID=Phyra78120.4;Parent=Phyra78120;constitutive=1;ensembl_phase=1;rank=4 scaffold_29 ensembl protein_coding_gene 249285 250241 . - . ID=Phyra46478;biotype=protein_coding;external_name=gwEuk.29.18.1;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 249285 250241 . - . ID=Phyra46478;Parent=Phyra46478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 249285 250241 . - 0 ID=Phyra46478;Parent=Phyra46478;rank=1 scaffold_29 . exon 249285 250241 . - . ID=Phyra46478.1;Parent=Phyra46478;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 239952 240392 . - . ID=Phyra78121;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000049;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 239952 240392 . - . ID=Phyra78121;Parent=Phyra78121;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 239952 240392 . - 0 ID=Phyra78121;Parent=Phyra78121;rank=1 scaffold_29 . exon 239952 240392 . - . ID=Phyra78121.1;Parent=Phyra78121;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 245861 246388 . - . ID=Phyra78122;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000050;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 245861 246388 . - . ID=Phyra78122;Parent=Phyra78122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 245861 246388 . - 0 ID=Phyra78122;Parent=Phyra78122;rank=1 scaffold_29 . exon 245861 246388 . - . ID=Phyra78122.1;Parent=Phyra78122;constitutive=1;rank=1 scaffold_29 . biological_region 250797 250798 0.999 + . logic_name=eponine scaffold_29 . biological_region 252146 252146 0.999 + . logic_name=eponine scaffold_29 . biological_region 256591 256593 0.999 + . logic_name=eponine scaffold_29 . biological_region 256860 256864 0.999 + . logic_name=eponine scaffold_29 . biological_region 256952 256954 0.999 + . logic_name=eponine scaffold_29 . biological_region 256973 256978 0.999 + . logic_name=eponine scaffold_29 . biological_region 257027 257033 0.999 - . logic_name=eponine scaffold_29 . biological_region 257063 257064 0.999 - . logic_name=eponine scaffold_29 . biological_region 257086 257086 0.999 + . logic_name=eponine scaffold_29 . biological_region 257096 257098 0.999 - . logic_name=eponine scaffold_29 . biological_region 257280 257282 0.999 - . logic_name=eponine scaffold_29 . biological_region 258928 258930 0.999 - . logic_name=eponine scaffold_29 ensembl protein_coding_gene 250660 252307 . - . ID=Phyra78124;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000052;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 250660 252307 . - . ID=Phyra78124;Parent=Phyra78124;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 250660 251036 . - 0 ID=Phyra78124;Parent=Phyra78124;rank=4 scaffold_29 . exon 250660 251036 . - . ID=Phyra78124.4;Parent=Phyra78124;constitutive=1;ensembl_phase=1;rank=4 scaffold_29 . CDS 251110 251300 . - 0 ID=Phyra78124;Parent=Phyra78124;rank=3 scaffold_29 . exon 251110 251300 . - . ID=Phyra78124.3;Parent=Phyra78124;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_29 . CDS 251702 252080 . - 0 ID=Phyra78124;Parent=Phyra78124;rank=2 scaffold_29 . exon 251702 252080 . - . ID=Phyra78124.2;Parent=Phyra78124;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_29 . CDS 252166 252307 . - 0 ID=Phyra78124;Parent=Phyra78124;rank=1 scaffold_29 . exon 252166 252307 . - . ID=Phyra78124.1;Parent=Phyra78124;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 ensembl protein_coding_gene 252527 257242 . - . ID=Phyra78125;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000053;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 252527 257242 . - . ID=Phyra78125;Parent=Phyra78125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 252527 257242 . - 0 ID=Phyra78125;Parent=Phyra78125;rank=1 scaffold_29 . exon 252527 257242 . - . ID=Phyra78125.1;Parent=Phyra78125;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 259027 259613 . + . ID=Phyra95028;biotype=protein_coding;external_name=C_scaffold_29000025;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 259027 259613 . + . ID=Phyra95028;Parent=Phyra95028;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 259027 259162 . + 0 ID=Phyra95028;Parent=Phyra95028;rank=1 scaffold_29 . exon 259027 259162 . + . ID=Phyra95028.1;Parent=Phyra95028;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . CDS 259237 259613 . + 0 ID=Phyra95028;Parent=Phyra95028;rank=2 scaffold_29 . exon 259237 259613 . + . ID=Phyra95028.2;Parent=Phyra95028;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . repeat_region 266270 266325 . ? . description=trf scaffold_29 ensembl protein_coding_gene 261882 263557 . - . ID=Phyra78128;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000056;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 261882 263557 . - . ID=Phyra78128;Parent=Phyra78128;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 261882 263341 . - 0 ID=Phyra78128;Parent=Phyra78128;rank=2 scaffold_29 . exon 261882 263341 . - . ID=Phyra78128.2;Parent=Phyra78128;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 263404 263557 . - 0 ID=Phyra78128;Parent=Phyra78128;rank=1 scaffold_29 . exon 263404 263557 . - . ID=Phyra78128.1;Parent=Phyra78128;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 ensembl protein_coding_gene 263828 265750 . + . ID=Phyra78129;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000057;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 263828 265750 . + . ID=Phyra78129;Parent=Phyra78129;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 263828 264367 . + 0 ID=Phyra78129;Parent=Phyra78129;rank=1 scaffold_29 . exon 263828 264367 . + . ID=Phyra78129.1;Parent=Phyra78129;constitutive=1;rank=1 scaffold_29 . CDS 264439 264682 . + 0 ID=Phyra78129;Parent=Phyra78129;rank=2 scaffold_29 . exon 264439 264682 . + . ID=Phyra78129.2;Parent=Phyra78129;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_29 . CDS 264771 264915 . + 0 ID=Phyra78129;Parent=Phyra78129;rank=3 scaffold_29 . exon 264771 264915 . + . ID=Phyra78129.3;Parent=Phyra78129;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_29 . CDS 265120 265750 . + 0 ID=Phyra78129;Parent=Phyra78129;rank=4 scaffold_29 . exon 265120 265750 . + . ID=Phyra78129.4;Parent=Phyra78129;constitutive=1;ensembl_phase=2;rank=4 scaffold_29 ensembl protein_coding_gene 266584 272088 . - . ID=Phyra78130;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000058;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 266584 272088 . - . ID=Phyra78130;Parent=Phyra78130;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 266584 266723 . - 0 ID=Phyra78130;Parent=Phyra78130;rank=7 scaffold_29 . exon 266584 266723 . - . ID=Phyra78130.7;Parent=Phyra78130;constitutive=1;ensembl_phase=1;rank=7 scaffold_29 . CDS 266795 267807 . - 0 ID=Phyra78130;Parent=Phyra78130;rank=6 scaffold_29 . exon 266795 267807 . - . ID=Phyra78130.6;Parent=Phyra78130;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_29 . CDS 267893 268540 . - 0 ID=Phyra78130;Parent=Phyra78130;rank=5 scaffold_29 . exon 267893 268540 . - . ID=Phyra78130.5;Parent=Phyra78130;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_29 . CDS 268561 268778 . - 0 ID=Phyra78130;Parent=Phyra78130;rank=4 scaffold_29 . exon 268561 268778 . - . ID=Phyra78130.4;Parent=Phyra78130;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_29 . CDS 268852 270957 . - 0 ID=Phyra78130;Parent=Phyra78130;rank=3 scaffold_29 . exon 268852 270957 . - . ID=Phyra78130.3;Parent=Phyra78130;constitutive=1;rank=3 scaffold_29 . CDS 271194 271594 . - 0 ID=Phyra78130;Parent=Phyra78130;rank=2 scaffold_29 . CDS 271620 272088 . - 0 ID=Phyra78130;Parent=Phyra78130;rank=1 scaffold_29 ensembl protein_coding_gene 259880 261528 . + . ID=Phyra95029;biotype=protein_coding;external_name=C_scaffold_29000026;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 259880 261528 . + . ID=Phyra95029;Parent=Phyra95029;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 259880 260011 . + 0 ID=Phyra95029;Parent=Phyra95029;rank=1 scaffold_29 . exon 259880 260011 . + . ID=Phyra95029.1;Parent=Phyra95029;constitutive=1;rank=1 scaffold_29 . CDS 260107 260486 . + 0 ID=Phyra95029;Parent=Phyra95029;rank=2 scaffold_29 . exon 260107 260486 . + . ID=Phyra95029.2;Parent=Phyra95029;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_29 . CDS 260924 261078 . + 0 ID=Phyra95029;Parent=Phyra95029;rank=3 scaffold_29 . exon 260924 261078 . + . ID=Phyra95029.3;Parent=Phyra95029;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_29 . CDS 261152 261528 . + 0 ID=Phyra95029;Parent=Phyra95029;rank=4 scaffold_29 . exon 261152 261528 . + . ID=Phyra95029.4;Parent=Phyra95029;constitutive=1;ensembl_phase=1;rank=4 scaffold_29 . repeat_region 270339 270346 . ? . description=dust scaffold_29 . biological_region 270368 270372 0.999 + . logic_name=eponine scaffold_29 . biological_region 273543 273543 0.999 - . logic_name=eponine scaffold_29 . biological_region 273557 273563 0.999 - . logic_name=eponine scaffold_29 . biological_region 273593 273598 0.999 - . logic_name=eponine scaffold_29 . biological_region 273996 274001 0.999 + . logic_name=eponine scaffold_29 . biological_region 274033 274036 0.999 + . logic_name=eponine scaffold_29 . biological_region 274878 274879 0.999 + . logic_name=eponine scaffold_29 ensembl snoRNA_gene 276809 276888 . - . ID=EPrPRAG00000000178;biotype=snoRNA;description=Small nucleolar RNA snR56 [Source:RFAM%3BAcc:RF01188];external_name=snR56;logic_name=ncrna_eg scaffold_29 ensembl snoRNA 276809 276888 . - . ID=EPrPRAT00000000178;Parent=EPrPRAG00000000178;biotype=snoRNA;logic_name=ncrna_eg scaffold_29 . exon 276809 276888 . - . ID=EPrPRAE00000000178;Parent=EPrPRAT00000000178;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . exon 271194 271594 . - . ID=Phyra78130.2;Parent=Phyra78130;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . exon 271620 272088 . - . ID=Phyra78130.1;Parent=Phyra78130;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 ensembl protein_coding_gene 272245 272727 . + . ID=Phyra78131;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000059;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 272245 272727 . + . ID=Phyra78131;Parent=Phyra78131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 272245 272590 . + 0 ID=Phyra78131;Parent=Phyra78131;rank=1 scaffold_29 . exon 272245 272590 . + . ID=Phyra78131.1;Parent=Phyra78131;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . CDS 272663 272727 . + 0 ID=Phyra78131;Parent=Phyra78131;rank=2 scaffold_29 . exon 272663 272727 . + . ID=Phyra78131.2;Parent=Phyra78131;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 ensembl protein_coding_gene 273922 276528 . + . ID=Phyra78133;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000061;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 273922 276528 . + . ID=Phyra78133;Parent=Phyra78133;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 273922 276029 . + 0 ID=Phyra78133;Parent=Phyra78133;rank=1 scaffold_29 . exon 273922 276029 . + . ID=Phyra78133.1;Parent=Phyra78133;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . CDS 276168 276528 . + 0 ID=Phyra78133;Parent=Phyra78133;rank=2 scaffold_29 . exon 276168 276528 . + . ID=Phyra78133.2;Parent=Phyra78133;constitutive=1;ensembl_phase=2;rank=2 scaffold_29 ensembl protein_coding_gene 278574 279944 . - . ID=Phyra78134;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000062;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 278574 279944 . - . ID=Phyra78134;Parent=Phyra78134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 278574 278960 . - 0 ID=Phyra78134;Parent=Phyra78134;rank=5 scaffold_29 . exon 278574 278960 . - . ID=Phyra78134.5;Parent=Phyra78134;constitutive=1;rank=5 scaffold_29 . CDS 279032 279070 . - 0 ID=Phyra78134;Parent=Phyra78134;rank=4 scaffold_29 . exon 279032 279070 . - . ID=Phyra78134.4;Parent=Phyra78134;constitutive=1;rank=4 scaffold_29 . CDS 279151 279648 . - 0 ID=Phyra78134;Parent=Phyra78134;rank=3 scaffold_29 . exon 279151 279648 . - . ID=Phyra78134.3;Parent=Phyra78134;constitutive=1;rank=3 scaffold_29 . CDS 279707 279814 . - 0 ID=Phyra78134;Parent=Phyra78134;rank=2 scaffold_29 . CDS 279888 279944 . - 0 ID=Phyra78134;Parent=Phyra78134;rank=1 scaffold_29 ensembl protein_coding_gene 273344 273829 . - . ID=Phyra95033;biotype=protein_coding;external_name=C_scaffold_29000030;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 273344 273829 . - . ID=Phyra95033;Parent=Phyra95033;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 273344 273829 . - 0 ID=Phyra95033;Parent=Phyra95033;rank=1 scaffold_29 . exon 273344 273829 . - . ID=Phyra95033.1;Parent=Phyra95033;constitutive=1;rank=1 scaffold_29 . repeat_region 281489 281525 . ? . description=trf scaffold_29 . repeat_region 284071 284118 . ? . description=trf scaffold_29 ensembl protein_coding_gene 282884 283810 . - . ID=Phyra71585;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_29000004;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 282884 283810 . - . ID=Phyra71585;Parent=Phyra71585;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 282884 283810 . - 0 ID=Phyra71585;Parent=Phyra71585;rank=1 scaffold_29 . exon 282884 283810 . - . ID=Phyra71585.1;Parent=Phyra71585;constitutive=1;rank=1 scaffold_29 . exon 279707 279814 . - . ID=Phyra78134.2;Parent=Phyra78134;constitutive=1;rank=2 scaffold_29 . exon 279888 279944 . - . ID=Phyra78134.1;Parent=Phyra78134;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 280147 280755 . + . ID=Phyra78135;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000063;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 280147 280755 . + . ID=Phyra78135;Parent=Phyra78135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 280147 280755 . + 0 ID=Phyra78135;Parent=Phyra78135;rank=1 scaffold_29 . exon 280147 280755 . + . ID=Phyra78135.1;Parent=Phyra78135;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 281068 281661 . + . ID=Phyra78136;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000064;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 281068 281661 . + . ID=Phyra78136;Parent=Phyra78136;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 281068 281661 . + 0 ID=Phyra78136;Parent=Phyra78136;rank=1 scaffold_29 . exon 281068 281661 . + . ID=Phyra78136.1;Parent=Phyra78136;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 284601 286541 . + . ID=Phyra78138;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000066;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 284601 286541 . + . ID=Phyra78138;Parent=Phyra78138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 284601 286541 . + 0 ID=Phyra78138;Parent=Phyra78138;rank=1 scaffold_29 . exon 284601 286541 . + . ID=Phyra78138.1;Parent=Phyra78138;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 286753 290895 . - . ID=Phyra78139;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000067;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 286753 290895 . - . ID=Phyra78139;Parent=Phyra78139;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 286753 290895 . - 0 ID=Phyra78139;Parent=Phyra78139;rank=1 scaffold_29 . exon 286753 290895 . - . ID=Phyra78139.1;Parent=Phyra78139;constitutive=1;rank=1 scaffold_29 . biological_region 294309 294310 0.999 - . logic_name=eponine scaffold_29 . biological_region 297730 297730 0.999 - . logic_name=eponine scaffold_29 ensembl protein_coding_gene 293090 293695 . + . ID=Phyra71586;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_29000005;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 293090 293695 . + . ID=Phyra71586;Parent=Phyra71586;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 293090 293695 . + 0 ID=Phyra71586;Parent=Phyra71586;rank=1 scaffold_29 . exon 293090 293695 . + . ID=Phyra71586.1;Parent=Phyra71586;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 292046 292987 . - . ID=Phyra78140;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000068;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 292046 292987 . - . ID=Phyra78140;Parent=Phyra78140;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 292046 292063 . - 0 ID=Phyra78140;Parent=Phyra78140;rank=6 scaffold_29 . exon 292046 292063 . - . ID=Phyra78140.6;Parent=Phyra78140;constitutive=1;rank=6 scaffold_29 . CDS 292195 292263 . - 0 ID=Phyra78140;Parent=Phyra78140;rank=5 scaffold_29 . exon 292195 292263 . - . ID=Phyra78140.5;Parent=Phyra78140;constitutive=1;rank=5 scaffold_29 . CDS 292303 292441 . - 0 ID=Phyra78140;Parent=Phyra78140;rank=4 scaffold_29 . exon 292303 292441 . - . ID=Phyra78140.4;Parent=Phyra78140;constitutive=1;ensembl_phase=2;rank=4 scaffold_29 . CDS 292510 292580 . - 0 ID=Phyra78140;Parent=Phyra78140;rank=3 scaffold_29 . exon 292510 292580 . - . ID=Phyra78140.3;Parent=Phyra78140;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_29 . CDS 292644 292735 . - 0 ID=Phyra78140;Parent=Phyra78140;rank=2 scaffold_29 . exon 292644 292735 . - . ID=Phyra78140.2;Parent=Phyra78140;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 292798 292987 . - 0 ID=Phyra78140;Parent=Phyra78140;rank=1 scaffold_29 . exon 292798 292987 . - . ID=Phyra78140.1;Parent=Phyra78140;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 ensembl protein_coding_gene 294651 296486 . + . ID=Phyra78142;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000070;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 294651 296486 . + . ID=Phyra78142;Parent=Phyra78142;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 294651 296486 . + 0 ID=Phyra78142;Parent=Phyra78142;rank=1 scaffold_29 . exon 294651 296486 . + . ID=Phyra78142.1;Parent=Phyra78142;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 297137 301243 . - . ID=Phyra78143;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000071;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 297137 301243 . - . ID=Phyra78143;Parent=Phyra78143;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 297137 301243 . - 0 ID=Phyra78143;Parent=Phyra78143;rank=1 scaffold_29 . exon 297137 301243 . - . ID=Phyra78143.1;Parent=Phyra78143;constitutive=1;rank=1 scaffold_29 . repeat_region 301897 301906 . ? . description=dust scaffold_29 ensembl protein_coding_gene 302360 306487 . - . ID=Phyra78144;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000072;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 302360 306487 . - . ID=Phyra78144;Parent=Phyra78144;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 302360 306487 . - 0 ID=Phyra78144;Parent=Phyra78144;rank=1 scaffold_29 . exon 302360 306487 . - . ID=Phyra78144.1;Parent=Phyra78144;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 307057 311175 . - . ID=Phyra78145;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000073;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 307057 311175 . - . ID=Phyra78145;Parent=Phyra78145;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 307057 311175 . - 0 ID=Phyra78145;Parent=Phyra78145;rank=1 scaffold_29 . exon 307057 311175 . - . ID=Phyra78145.1;Parent=Phyra78145;constitutive=1;rank=1 scaffold_29 . biological_region 309621 309623 0.999 - . logic_name=eponine scaffold_29 . biological_region 312207 312209 0.999 - . logic_name=eponine scaffold_29 . biological_region 313451 313455 0.999 + . logic_name=eponine scaffold_29 . biological_region 313471 313477 0.999 - . logic_name=eponine scaffold_29 . biological_region 315344 315346 0.999 - . logic_name=eponine scaffold_29 . biological_region 317934 317936 0.999 - . logic_name=eponine scaffold_29 ensembl protein_coding_gene 312780 316898 . - . ID=Phyra78146;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000074;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 312780 316898 . - . ID=Phyra78146;Parent=Phyra78146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 312780 316898 . - 0 ID=Phyra78146;Parent=Phyra78146;rank=1 scaffold_29 . exon 312780 316898 . - . ID=Phyra78146.1;Parent=Phyra78146;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 318510 332046 . - . ID=Phyra78147;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000075;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 318510 332046 . - . ID=Phyra78147;Parent=Phyra78147;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 318510 319145 . - 0 ID=Phyra78147;Parent=Phyra78147;rank=2 scaffold_29 . exon 318510 319145 . - . ID=Phyra78147.2;Parent=Phyra78147;constitutive=1;rank=2 scaffold_29 . CDS 330121 332046 . - 0 ID=Phyra78147;Parent=Phyra78147;rank=1 scaffold_29 . repeat_region 319150 330078 . ? . description=dust scaffold_29 . biological_region 331554 331556 0.999 - . logic_name=eponine scaffold_29 ensembl protein_coding_gene 318510 332046 . - . ID=Phyra78147;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000075;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 318510 332046 . - . ID=Phyra78147;Parent=Phyra78147;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 318510 319145 . - 0 ID=Phyra78147;Parent=Phyra78147;rank=2 scaffold_29 . CDS 330121 332046 . - 0 ID=Phyra78147;Parent=Phyra78147;rank=1 scaffold_29 . exon 330121 332046 . - . ID=Phyra78147.1;Parent=Phyra78147;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 332903 337030 . - . ID=Phyra78148;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000076;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 332903 337030 . - . ID=Phyra78148;Parent=Phyra78148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 332903 337030 . - 0 ID=Phyra78148;Parent=Phyra78148;rank=1 scaffold_29 . exon 332903 337030 . - . ID=Phyra78148.1;Parent=Phyra78148;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 348343 350076 . + . ID=Phyra71587;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_29000006;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 348343 350076 . + . ID=Phyra71587;Parent=Phyra71587;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 348343 350076 . + 0 ID=Phyra71587;Parent=Phyra71587;rank=1 scaffold_29 . exon 348343 350076 . + . ID=Phyra71587.1;Parent=Phyra71587;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 341300 345760 . + . ID=Phyra78149;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000077;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 341300 345760 . + . ID=Phyra78149;Parent=Phyra78149;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 341300 345760 . + 0 ID=Phyra78149;Parent=Phyra78149;rank=1 scaffold_29 . exon 341300 345760 . + . ID=Phyra78149.1;Parent=Phyra78149;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 346068 347571 . + . ID=Phyra78150;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000078;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 346068 347571 . + . ID=Phyra78150;Parent=Phyra78150;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 346068 347014 . + 0 ID=Phyra78150;Parent=Phyra78150;rank=1 scaffold_29 . exon 346068 347014 . + . ID=Phyra78150.1;Parent=Phyra78150;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . CDS 347079 347571 . + 0 ID=Phyra78150;Parent=Phyra78150;rank=2 scaffold_29 . exon 347079 347571 . + . ID=Phyra78150.2;Parent=Phyra78150;constitutive=1;ensembl_phase=2;rank=2 scaffold_29 . biological_region 349574 349577 0.999 + . logic_name=eponine scaffold_29 . biological_region 349614 349617 0.999 + . logic_name=eponine scaffold_29 . biological_region 349642 349644 0.999 - . logic_name=eponine scaffold_29 . biological_region 349772 349774 0.999 + . logic_name=eponine scaffold_29 . repeat_region 350022 350070 . ? . description=trf scaffold_29 . biological_region 351693 351695 0.999 + . logic_name=eponine scaffold_29 . repeat_region 353303 353363 . ? . description=trf scaffold_29 . repeat_region 353303 353364 . ? . description=trf scaffold_29 . biological_region 354602 354603 0.999 + . logic_name=eponine scaffold_29 . repeat_region 357699 357711 . ? . description=dust scaffold_29 . repeat_region 358860 358871 . ? . description=dust scaffold_29 . repeat_region 358931 367773 . ? . description=dust scaffold_29 ensembl protein_coding_gene 350604 352625 . + . ID=Phyra78152;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000080;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 350604 352625 . + . ID=Phyra78152;Parent=Phyra78152;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 350604 352625 . + 0 ID=Phyra78152;Parent=Phyra78152;rank=1 scaffold_29 . exon 350604 352625 . + . ID=Phyra78152.1;Parent=Phyra78152;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 352918 355925 . - . ID=Phyra78153;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000081;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 352918 355925 . - . ID=Phyra78153;Parent=Phyra78153;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 352918 354231 . - 0 ID=Phyra78153;Parent=Phyra78153;rank=4 scaffold_29 . exon 352918 354231 . - . ID=Phyra78153.4;Parent=Phyra78153;constitutive=1;rank=4 scaffold_29 . CDS 354365 355309 . - 0 ID=Phyra78153;Parent=Phyra78153;rank=3 scaffold_29 . exon 354365 355309 . - . ID=Phyra78153.3;Parent=Phyra78153;constitutive=1;rank=3 scaffold_29 . CDS 355355 355714 . - 0 ID=Phyra78153;Parent=Phyra78153;rank=2 scaffold_29 . exon 355355 355714 . - . ID=Phyra78153.2;Parent=Phyra78153;constitutive=1;rank=2 scaffold_29 . CDS 355851 355925 . - 0 ID=Phyra78153;Parent=Phyra78153;rank=1 scaffold_29 . exon 355851 355925 . - . ID=Phyra78153.1;Parent=Phyra78153;constitutive=1;rank=1 scaffold_29 . repeat_region 369453 370102 . ? . description=dust scaffold_29 . repeat_region 371353 371402 . ? . description=dust scaffold_29 . biological_region 371678 371683 0.999 + . logic_name=eponine scaffold_29 . biological_region 371699 371704 0.999 + . logic_name=eponine scaffold_29 . biological_region 371703 371707 0.999 - . logic_name=eponine scaffold_29 . biological_region 372253 372256 0.999 - . logic_name=eponine scaffold_29 . repeat_region 372853 372903 . ? . description=dust scaffold_29 . biological_region 373829 373833 0.999 - . logic_name=eponine scaffold_29 . repeat_region 378128 378141 . ? . description=dust scaffold_29 . repeat_region 380830 380870 . ? . description=trf scaffold_29 ensembl protein_coding_gene 381968 382696 . - . ID=Phyra71588;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_29000007;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 381968 382696 . - . ID=Phyra71588;Parent=Phyra71588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 381968 382696 . - 0 ID=Phyra71588;Parent=Phyra71588;rank=1 scaffold_29 . exon 381968 382696 . - . ID=Phyra71588.1;Parent=Phyra71588;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 380434 381602 . + . ID=Phyra78154;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000082;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 380434 381602 . + . ID=Phyra78154;Parent=Phyra78154;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 380434 380437 . + 0 ID=Phyra78154;Parent=Phyra78154;rank=1 scaffold_29 . exon 380434 380437 . + . ID=Phyra78154.1;Parent=Phyra78154;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . CDS 380673 380846 . + 0 ID=Phyra78154;Parent=Phyra78154;rank=2 scaffold_29 . exon 380673 380846 . + . ID=Phyra78154.2;Parent=Phyra78154;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 380929 381058 . + 0 ID=Phyra78154;Parent=Phyra78154;rank=3 scaffold_29 . exon 380929 381058 . + . ID=Phyra78154.3;Parent=Phyra78154;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_29 . CDS 381164 381317 . + 0 ID=Phyra78154;Parent=Phyra78154;rank=4 scaffold_29 . exon 381164 381317 . + . ID=Phyra78154.4;Parent=Phyra78154;constitutive=1;ensembl_phase=2;rank=4 scaffold_29 . CDS 381417 381602 . + 0 ID=Phyra78154;Parent=Phyra78154;rank=5 scaffold_29 . exon 381417 381602 . + . ID=Phyra78154.5;Parent=Phyra78154;constitutive=1;rank=5 scaffold_29 . repeat_region 389552 389564 . ? . description=dust scaffold_29 . biological_region 391838 391839 0.999 - . logic_name=eponine scaffold_29 . biological_region 391891 391895 0.999 + . logic_name=eponine scaffold_29 . repeat_region 392454 392462 . ? . description=dust scaffold_29 . repeat_region 394082 394089 . ? . description=dust scaffold_29 . biological_region 394412 394415 0.999 - . logic_name=eponine scaffold_29 . biological_region 394480 394485 0.999 - . logic_name=eponine scaffold_29 . repeat_region 394964 395013 . ? . description=dust scaffold_29 . repeat_region 397548 397559 . ? . description=dust scaffold_29 . repeat_region 397836 397851 . ? . description=dust scaffold_29 . repeat_region 398405 399034 . ? . description=dust scaffold_29 ensembl protein_coding_gene 394329 395624 . - . ID=Phyra78156;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000084;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 394329 395624 . - . ID=Phyra78156;Parent=Phyra78156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 394329 394618 . - 0 ID=Phyra78156;Parent=Phyra78156;rank=3 scaffold_29 . exon 394329 394618 . - . ID=Phyra78156.3;Parent=Phyra78156;constitutive=1;ensembl_phase=1;rank=3 scaffold_29 . CDS 394640 394767 . - 0 ID=Phyra78156;Parent=Phyra78156;rank=2 scaffold_29 . exon 394640 394767 . - . ID=Phyra78156.2;Parent=Phyra78156;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_29 . CDS 395035 395624 . - 0 ID=Phyra78156;Parent=Phyra78156;rank=1 scaffold_29 . exon 395035 395624 . - . ID=Phyra78156.1;Parent=Phyra78156;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . repeat_region 407445 407476 . ? . description=trf scaffold_29 ensembl protein_coding_gene 402559 403089 . - . ID=Phyra78157;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000085;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 402559 403089 . - . ID=Phyra78157;Parent=Phyra78157;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 402559 403089 . - 0 ID=Phyra78157;Parent=Phyra78157;rank=1 scaffold_29 . exon 402559 403089 . - . ID=Phyra78157.1;Parent=Phyra78157;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 404754 405131 . + . ID=Phyra78158;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000086;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 404754 405131 . + . ID=Phyra78158;Parent=Phyra78158;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 404754 405131 . + 0 ID=Phyra78158;Parent=Phyra78158;rank=1 scaffold_29 . exon 404754 405131 . + . ID=Phyra78158.1;Parent=Phyra78158;constitutive=1;rank=1 scaffold_29 . biological_region 415093 415093 0.999 - . logic_name=eponine scaffold_29 . repeat_region 415154 415162 . ? . description=dust scaffold_29 . repeat_region 418456 418505 . ? . description=dust scaffold_29 . biological_region 419053 419053 0.999 + . logic_name=eponine scaffold_29 ensembl protein_coding_gene 416645 417037 . + . ID=Phyra46542;biotype=protein_coding;external_name=gwEuk.29.82.1;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 416645 417037 . + . ID=Phyra46542;Parent=Phyra46542;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 416645 417037 . + 0 ID=Phyra46542;Parent=Phyra46542;rank=1 scaffold_29 . exon 416645 417037 . + . ID=Phyra46542.1;Parent=Phyra46542;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 427317 428938 . - . ID=Phyra78159;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000087;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 427317 428938 . - . ID=Phyra78159;Parent=Phyra78159;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 427317 427724 . - 0 ID=Phyra78159;Parent=Phyra78159;rank=4 scaffold_29 . exon 427317 427724 . - . ID=Phyra78159.4;Parent=Phyra78159;constitutive=1;rank=4 scaffold_29 . CDS 427859 427962 . - 0 ID=Phyra78159;Parent=Phyra78159;rank=3 scaffold_29 . exon 427859 427962 . - . ID=Phyra78159.3;Parent=Phyra78159;constitutive=1;ensembl_phase=1;rank=3 scaffold_29 . CDS 427987 428004 . - 0 ID=Phyra78159;Parent=Phyra78159;rank=2 scaffold_29 . exon 427987 428004 . - . ID=Phyra78159.2;Parent=Phyra78159;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 428059 428938 . - 0 ID=Phyra78159;Parent=Phyra78159;rank=1 scaffold_29 . exon 428059 428938 . - . ID=Phyra78159.1;Parent=Phyra78159;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . repeat_region 433752 433857 . ? . description=trf scaffold_29 . repeat_region 433768 433853 . ? . description=trf scaffold_29 . repeat_region 433996 434105 . ? . description=trf scaffold_29 . repeat_region 434330 434379 . ? . description=dust scaffold_29 . repeat_region 436811 436940 . ? . description=trf scaffold_29 . repeat_region 436973 437106 . ? . description=trf scaffold_29 . biological_region 437179 437180 0.999 - . logic_name=eponine scaffold_29 ensembl protein_coding_gene 433650 434557 . - . ID=Phyra78160;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000088;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 433650 434557 . - . ID=Phyra78160;Parent=Phyra78160;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 433650 434290 . - 0 ID=Phyra78160;Parent=Phyra78160;rank=2 scaffold_29 . exon 433650 434290 . - . ID=Phyra78160.2;Parent=Phyra78160;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 434398 434557 . - 0 ID=Phyra78160;Parent=Phyra78160;rank=1 scaffold_29 . exon 434398 434557 . - . ID=Phyra78160.1;Parent=Phyra78160;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 ensembl protein_coding_gene 436696 437817 . - . ID=Phyra78161;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000089;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 436696 437817 . - . ID=Phyra78161;Parent=Phyra78161;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 436696 437817 . - 0 ID=Phyra78161;Parent=Phyra78161;rank=1 scaffold_29 . exon 436696 437817 . - . ID=Phyra78161.1;Parent=Phyra78161;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 441047 442483 . - . ID=Phyra78162;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000090;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 441047 442483 . - . ID=Phyra78162;Parent=Phyra78162;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 441047 442483 . - 0 ID=Phyra78162;Parent=Phyra78162;rank=1 scaffold_29 . exon 441047 442483 . - . ID=Phyra78162.1;Parent=Phyra78162;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 446493 447569 . - . ID=Phyra78163;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000091;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 446493 447569 . - . ID=Phyra78163;Parent=Phyra78163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 446493 447569 . - 0 ID=Phyra78163;Parent=Phyra78163;rank=1 scaffold_29 . exon 446493 447569 . - . ID=Phyra78163.1;Parent=Phyra78163;constitutive=1;rank=1 scaffold_29 . biological_region 451322 451324 0.999 + . logic_name=eponine scaffold_29 . biological_region 451359 451360 0.999 - . logic_name=eponine scaffold_29 . repeat_region 451953 452032 . ? . description=trf scaffold_29 ensembl protein_coding_gene 451277 452194 . + . ID=Phyra78164;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000092;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 451277 452194 . + . ID=Phyra78164;Parent=Phyra78164;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 451277 452194 . + 0 ID=Phyra78164;Parent=Phyra78164;rank=1 scaffold_29 . exon 451277 452194 . + . ID=Phyra78164.1;Parent=Phyra78164;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 453081 454019 . + . ID=Phyra78165;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000093;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 453081 454019 . + . ID=Phyra78165;Parent=Phyra78165;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 453081 454019 . + 0 ID=Phyra78165;Parent=Phyra78165;rank=1 scaffold_29 . exon 453081 454019 . + . ID=Phyra78165.1;Parent=Phyra78165;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 457965 458819 . + . ID=Phyra78167;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000095;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 457965 458819 . + . ID=Phyra78167;Parent=Phyra78167;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 457965 458819 . + 0 ID=Phyra78167;Parent=Phyra78167;rank=1 scaffold_29 . exon 457965 458819 . + . ID=Phyra78167.1;Parent=Phyra78167;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 454959 455938 . + . ID=Phyra95036;biotype=protein_coding;external_name=C_scaffold_29000033;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 454959 455938 . + . ID=Phyra95036;Parent=Phyra95036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 454959 455453 . + 0 ID=Phyra95036;Parent=Phyra95036;rank=1 scaffold_29 . exon 454959 455453 . + . ID=Phyra95036.1;Parent=Phyra95036;constitutive=1;rank=1 scaffold_29 . CDS 455523 455701 . + 0 ID=Phyra95036;Parent=Phyra95036;rank=2 scaffold_29 . exon 455523 455701 . + . ID=Phyra95036.2;Parent=Phyra95036;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_29 . CDS 455800 455938 . + 0 ID=Phyra95036;Parent=Phyra95036;rank=3 scaffold_29 . exon 455800 455938 . + . ID=Phyra95036.3;Parent=Phyra95036;constitutive=1;ensembl_phase=2;rank=3 scaffold_29 ensembl protein_coding_gene 459957 460911 . - . ID=Phyra78168;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000096;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 459957 460911 . - . ID=Phyra78168;Parent=Phyra78168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 459957 460252 . - 0 ID=Phyra78168;Parent=Phyra78168;rank=2 scaffold_29 . exon 459957 460252 . - . ID=Phyra78168.2;Parent=Phyra78168;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 460320 460911 . - 0 ID=Phyra78168;Parent=Phyra78168;rank=1 scaffold_29 . exon 460320 460911 . - . ID=Phyra78168.1;Parent=Phyra78168;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 ensembl protein_coding_gene 461496 462668 . - . ID=Phyra78169;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000097;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 461496 462668 . - . ID=Phyra78169;Parent=Phyra78169;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 461496 462668 . - 0 ID=Phyra78169;Parent=Phyra78169;rank=1 scaffold_29 . exon 461496 462668 . - . ID=Phyra78169.1;Parent=Phyra78169;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 463189 464157 . - . ID=Phyra78170;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000098;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 463189 464157 . - . ID=Phyra78170;Parent=Phyra78170;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 463189 464157 . - 0 ID=Phyra78170;Parent=Phyra78170;rank=1 scaffold_29 . exon 463189 464157 . - . ID=Phyra78170.1;Parent=Phyra78170;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 464841 465659 . - . ID=Phyra78171;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000099;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 464841 465659 . - . ID=Phyra78171;Parent=Phyra78171;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 464841 465659 . - 0 ID=Phyra78171;Parent=Phyra78171;rank=1 scaffold_29 . exon 464841 465659 . - . ID=Phyra78171.1;Parent=Phyra78171;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 466505 467662 . + . ID=Phyra78172;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000100;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 466505 467662 . + . ID=Phyra78172;Parent=Phyra78172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 466505 467662 . + 0 ID=Phyra78172;Parent=Phyra78172;rank=1 scaffold_29 . exon 466505 467662 . + . ID=Phyra78172.1;Parent=Phyra78172;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 468182 468847 . + . ID=Phyra78173;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000101;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 468182 468847 . + . ID=Phyra78173;Parent=Phyra78173;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 468182 468847 . + 0 ID=Phyra78173;Parent=Phyra78173;rank=1 scaffold_29 . exon 468182 468847 . + . ID=Phyra78173.1;Parent=Phyra78173;constitutive=1;rank=1 scaffold_29 . repeat_region 469504 469549 . ? . description=trf scaffold_29 . biological_region 470688 470693 0.999 - . logic_name=eponine scaffold_29 . biological_region 470813 470817 0.999 + . logic_name=eponine scaffold_29 . biological_region 472897 472899 0.999 + . logic_name=eponine scaffold_29 . repeat_region 473065 473113 . ? . description=trf scaffold_29 . repeat_region 473074 473126 . ? . description=trf scaffold_29 . biological_region 473738 473743 0.999 + . logic_name=eponine scaffold_29 . biological_region 473786 473789 0.999 + . logic_name=eponine scaffold_29 . biological_region 473935 473939 0.999 - . logic_name=eponine scaffold_29 . biological_region 474081 474082 0.999 + . logic_name=eponine scaffold_29 . biological_region 474433 474437 0.999 + . logic_name=eponine scaffold_29 . biological_region 474467 474469 0.999 + . logic_name=eponine scaffold_29 . repeat_region 474536 474556 . ? . description=trf scaffold_29 . repeat_region 474695 474747 . ? . description=trf scaffold_29 . repeat_region 475205 475289 . ? . description=trf scaffold_29 . biological_region 475700 475700 0.999 + . logic_name=eponine scaffold_29 . repeat_region 477067 477075 . ? . description=dust scaffold_29 . repeat_region 477593 477642 . ? . description=dust scaffold_29 . repeat_region 478653 478702 . ? . description=dust scaffold_29 . biological_region 478925 478927 0.999 + . logic_name=eponine scaffold_29 . biological_region 478976 478979 0.999 + . logic_name=eponine scaffold_29 . biological_region 479079 479081 0.999 + . logic_name=eponine scaffold_29 . biological_region 479133 479133 0.999 + . logic_name=eponine scaffold_29 ensembl protein_coding_gene 471011 471850 . + . ID=Phyra78174;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000102;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 471011 471850 . + . ID=Phyra78174;Parent=Phyra78174;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 471011 471850 . + 0 ID=Phyra78174;Parent=Phyra78174;rank=1 scaffold_29 . exon 471011 471850 . + . ID=Phyra78174.1;Parent=Phyra78174;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 472302 473261 . + . ID=Phyra78175;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000103;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 472302 473261 . + . ID=Phyra78175;Parent=Phyra78175;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 472302 473261 . + 0 ID=Phyra78175;Parent=Phyra78175;rank=1 scaffold_29 . exon 472302 473261 . + . ID=Phyra78175.1;Parent=Phyra78175;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 473645 474583 . - . ID=Phyra78176;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000104;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 473645 474583 . - . ID=Phyra78176;Parent=Phyra78176;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 473645 474583 . - 0 ID=Phyra78176;Parent=Phyra78176;rank=1 scaffold_29 . exon 473645 474583 . - . ID=Phyra78176.1;Parent=Phyra78176;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 475081 476055 . - . ID=Phyra78177;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000105;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 475081 476055 . - . ID=Phyra78177;Parent=Phyra78177;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 475081 476055 . - 0 ID=Phyra78177;Parent=Phyra78177;rank=1 scaffold_29 . exon 475081 476055 . - . ID=Phyra78177.1;Parent=Phyra78177;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 478585 480861 . + . ID=Phyra78178;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000106;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 478585 480861 . + . ID=Phyra78178;Parent=Phyra78178;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 478585 478625 . + 0 ID=Phyra78178;Parent=Phyra78178;rank=1 scaffold_29 . exon 478585 478625 . + . ID=Phyra78178.1;Parent=Phyra78178;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . CDS 478886 480061 . + 0 ID=Phyra78178;Parent=Phyra78178;rank=2 scaffold_29 . exon 478886 480061 . + . ID=Phyra78178.2;Parent=Phyra78178;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_29 . CDS 480134 480293 . + 0 ID=Phyra78178;Parent=Phyra78178;rank=3 scaffold_29 . CDS 480357 480566 . + 0 ID=Phyra78178;Parent=Phyra78178;rank=4 scaffold_29 . CDS 480811 480861 . + 0 ID=Phyra78178;Parent=Phyra78178;rank=5 scaffold_29 ensembl pseudogene 481527 482080 . - . ID=Phyra46547;biotype=pseudogene;external_name=gwEuk.29.87.1;logic_name=jgi_phyra1 scaffold_29 ensembl pseudogene 481527 482080 . - . ID=Phyra46547;Parent=Phyra46547;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_29 . exon 481527 482080 . - . ID=Phyra46547.1;Parent=Phyra46547;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 ensembl protein_coding_gene 486588 486690 . + . ID=Phyra46548;biotype=protein_coding;external_name=gwEuk.29.88.1;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 486588 486690 . + . ID=Phyra46548;Parent=Phyra46548;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 486588 486690 . + 0 ID=Phyra46548;Parent=Phyra46548;rank=1 scaffold_29 . exon 486588 486690 . + . ID=Phyra46548.1;Parent=Phyra46548;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . exon 480134 480293 . + . ID=Phyra78178.3;Parent=Phyra78178;constitutive=1;ensembl_phase=2;rank=3 scaffold_29 . exon 480357 480566 . + . ID=Phyra78178.4;Parent=Phyra78178;constitutive=1;rank=4 scaffold_29 . exon 480811 480861 . + . ID=Phyra78178.5;Parent=Phyra78178;constitutive=1;rank=5 scaffold_29 ensembl protein_coding_gene 483219 485775 . - . ID=Phyra78179;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000107;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 483219 485775 . - . ID=Phyra78179;Parent=Phyra78179;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 483219 483229 . - 0 ID=Phyra78179;Parent=Phyra78179;rank=6 scaffold_29 . exon 483219 483229 . - . ID=Phyra78179.6;Parent=Phyra78179;constitutive=1;ensembl_phase=1;rank=6 scaffold_29 . CDS 483295 483994 . - 0 ID=Phyra78179;Parent=Phyra78179;rank=5 scaffold_29 . exon 483295 483994 . - . ID=Phyra78179.5;Parent=Phyra78179;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_29 . CDS 484343 484590 . - 0 ID=Phyra78179;Parent=Phyra78179;rank=4 scaffold_29 . exon 484343 484590 . - . ID=Phyra78179.4;Parent=Phyra78179;constitutive=1;ensembl_phase=1;rank=4 scaffold_29 . CDS 484748 485125 . - 0 ID=Phyra78179;Parent=Phyra78179;rank=3 scaffold_29 . exon 484748 485125 . - . ID=Phyra78179.3;Parent=Phyra78179;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_29 . CDS 485441 485477 . - 0 ID=Phyra78179;Parent=Phyra78179;rank=2 scaffold_29 . exon 485441 485477 . - . ID=Phyra78179.2;Parent=Phyra78179;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_29 . CDS 485554 485775 . - 0 ID=Phyra78179;Parent=Phyra78179;rank=1 scaffold_29 . exon 485554 485775 . - . ID=Phyra78179.1;Parent=Phyra78179;constitutive=1;rank=1 scaffold_29 . biological_region 489916 489918 0.999 + . logic_name=eponine scaffold_29 . repeat_region 491240 491247 . ? . description=dust scaffold_29 . biological_region 492411 492413 0.999 - . logic_name=eponine scaffold_29 . biological_region 492469 492469 0.999 + . logic_name=eponine scaffold_29 . repeat_region 492563 492621 . ? . description=dust scaffold_29 . biological_region 493165 493171 0.999 - . logic_name=eponine scaffold_29 . biological_region 494772 494775 0.999 + . logic_name=eponine scaffold_29 . biological_region 494871 494874 0.999 - . logic_name=eponine scaffold_29 . biological_region 494905 494908 0.999 + . logic_name=eponine scaffold_29 . biological_region 495074 495077 0.999 + . logic_name=eponine scaffold_29 . biological_region 497519 497522 0.999 + . logic_name=eponine scaffold_29 . biological_region 498319 498322 0.999 - . logic_name=eponine scaffold_29 ensembl protein_coding_gene 491989 493323 . + . ID=Phyra71589;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_29000008;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 491989 493323 . + . ID=Phyra71589;Parent=Phyra71589;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 491989 493323 . + 0 ID=Phyra71589;Parent=Phyra71589;rank=1 scaffold_29 . exon 491989 493323 . + . ID=Phyra71589.1;Parent=Phyra71589;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 494352 497450 . - . ID=Phyra78181;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000109;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 494352 497450 . - . ID=Phyra78181;Parent=Phyra78181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 494352 497450 . - 0 ID=Phyra78181;Parent=Phyra78181;rank=1 scaffold_29 . exon 494352 497450 . - . ID=Phyra78181.1;Parent=Phyra78181;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 499877 500098 . + . ID=Phyra46552;biotype=protein_coding;external_name=gwEuk.29.92.1;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 499877 500098 . + . ID=Phyra46552;Parent=Phyra46552;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 499877 500098 . + 0 ID=Phyra46552;Parent=Phyra46552;rank=1 scaffold_29 . exon 499877 500098 . + . ID=Phyra46552.1;Parent=Phyra46552;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 501076 502083 . - . ID=Phyra78183;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000111;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 501076 502083 . - . ID=Phyra78183;Parent=Phyra78183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 501076 502083 . - 0 ID=Phyra78183;Parent=Phyra78183;rank=1 scaffold_29 . exon 501076 502083 . - . ID=Phyra78183.1;Parent=Phyra78183;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 502589 503623 . + . ID=Phyra78184;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000112;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 502589 503623 . + . ID=Phyra78184;Parent=Phyra78184;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 502589 503623 . + 0 ID=Phyra78184;Parent=Phyra78184;rank=1 scaffold_29 . exon 502589 503623 . + . ID=Phyra78184.1;Parent=Phyra78184;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 503781 505039 . - . ID=Phyra78185;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000113;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 503781 505039 . - . ID=Phyra78185;Parent=Phyra78185;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 503781 504219 . - 0 ID=Phyra78185;Parent=Phyra78185;rank=5 scaffold_29 . exon 503781 504219 . - . ID=Phyra78185.5;Parent=Phyra78185;constitutive=1;ensembl_phase=2;rank=5 scaffold_29 . CDS 504471 504576 . - 0 ID=Phyra78185;Parent=Phyra78185;rank=4 scaffold_29 . exon 504471 504576 . - . ID=Phyra78185.4;Parent=Phyra78185;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_29 . CDS 504647 504736 . - 0 ID=Phyra78185;Parent=Phyra78185;rank=3 scaffold_29 . exon 504647 504736 . - . ID=Phyra78185.3;Parent=Phyra78185;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_29 . CDS 504795 504840 . - 0 ID=Phyra78185;Parent=Phyra78185;rank=2 scaffold_29 . exon 504795 504840 . - . ID=Phyra78185.2;Parent=Phyra78185;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_29 . CDS 504905 505039 . - 0 ID=Phyra78185;Parent=Phyra78185;rank=1 scaffold_29 . exon 504905 505039 . - . ID=Phyra78185.1;Parent=Phyra78185;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 505350 507179 . + . ID=Phyra78186;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000114;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 505350 507179 . + . ID=Phyra78186;Parent=Phyra78186;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 505350 505446 . + 0 ID=Phyra78186;Parent=Phyra78186;rank=1 scaffold_29 . exon 505350 505446 . + . ID=Phyra78186.1;Parent=Phyra78186;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . CDS 505508 506006 . + 0 ID=Phyra78186;Parent=Phyra78186;rank=2 scaffold_29 . exon 505508 506006 . + . ID=Phyra78186.2;Parent=Phyra78186;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_29 . CDS 506066 507179 . + 0 ID=Phyra78186;Parent=Phyra78186;rank=3 scaffold_29 . exon 506066 507179 . + . ID=Phyra78186.3;Parent=Phyra78186;constitutive=1;ensembl_phase=2;rank=3 scaffold_29 ensembl protein_coding_gene 507852 508460 . + . ID=Phyra78187;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000115;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 507852 508460 . + . ID=Phyra78187;Parent=Phyra78187;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 507852 508460 . + 0 ID=Phyra78187;Parent=Phyra78187;rank=1 scaffold_29 . exon 507852 508460 . + . ID=Phyra78187.1;Parent=Phyra78187;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 509177 509776 . + . ID=Phyra78188;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000116;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 509177 509776 . + . ID=Phyra78188;Parent=Phyra78188;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 509177 509776 . + 0 ID=Phyra78188;Parent=Phyra78188;rank=1 scaffold_29 . exon 509177 509776 . + . ID=Phyra78188.1;Parent=Phyra78188;constitutive=1;rank=1 scaffold_29 . biological_region 511796 511803 0.999 + . logic_name=eponine scaffold_29 . biological_region 512294 512300 0.999 - . logic_name=eponine scaffold_29 . repeat_region 513314 513363 . ? . description=dust scaffold_29 . biological_region 514713 514717 0.999 + . logic_name=eponine scaffold_29 . biological_region 517356 517362 0.999 + . logic_name=eponine scaffold_29 . biological_region 517857 517861 0.999 - . logic_name=eponine scaffold_29 ensembl protein_coding_gene 510873 511397 . + . ID=Phyra78189;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000117;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 510873 511397 . + . ID=Phyra78189;Parent=Phyra78189;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 510873 511397 . + 0 ID=Phyra78189;Parent=Phyra78189;rank=1 scaffold_29 . exon 510873 511397 . + . ID=Phyra78189.1;Parent=Phyra78189;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 513412 514020 . + . ID=Phyra78190;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000118;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 513412 514020 . + . ID=Phyra78190;Parent=Phyra78190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 513412 514020 . + 0 ID=Phyra78190;Parent=Phyra78190;rank=1 scaffold_29 . exon 513412 514020 . + . ID=Phyra78190.1;Parent=Phyra78190;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 514737 515336 . + . ID=Phyra78191;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000119;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 514737 515336 . + . ID=Phyra78191;Parent=Phyra78191;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 514737 515336 . + 0 ID=Phyra78191;Parent=Phyra78191;rank=1 scaffold_29 . exon 514737 515336 . + . ID=Phyra78191.1;Parent=Phyra78191;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 516433 516957 . + . ID=Phyra78192;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000120;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 516433 516957 . + . ID=Phyra78192;Parent=Phyra78192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 516433 516957 . + 0 ID=Phyra78192;Parent=Phyra78192;rank=1 scaffold_29 . exon 516433 516957 . + . ID=Phyra78192.1;Parent=Phyra78192;constitutive=1;rank=1 scaffold_29 . repeat_region 528211 528237 . ? . description=trf scaffold_29 ensembl protein_coding_gene 526316 528593 . - . ID=Phyra46579;biotype=protein_coding;external_name=gwEuk.29.119.1;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 526316 528593 . - . ID=Phyra46579;Parent=Phyra46579;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 526316 528454 . - 0 ID=Phyra46579;Parent=Phyra46579;rank=2 scaffold_29 . exon 526316 528454 . - . ID=Phyra46579.2;Parent=Phyra46579;constitutive=1;rank=2 scaffold_29 . CDS 528522 528593 . - 0 ID=Phyra46579;Parent=Phyra46579;rank=1 scaffold_29 . exon 528522 528593 . - . ID=Phyra46579.1;Parent=Phyra46579;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 522467 524827 . - . ID=Phyra78193;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000121;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 522467 524827 . - . ID=Phyra78193;Parent=Phyra78193;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 522467 524827 . - 0 ID=Phyra78193;Parent=Phyra78193;rank=1 scaffold_29 . exon 522467 524827 . - . ID=Phyra78193.1;Parent=Phyra78193;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 525715 526251 . + . ID=Phyra78194;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_29000122;logic_name=jgi_phyra1 scaffold_29 ensembl transcript 525715 526251 . + . ID=Phyra78194;Parent=Phyra78194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_29 . CDS 525715 526251 . + 0 ID=Phyra78194;Parent=Phyra78194;rank=1 scaffold_29 . exon 525715 526251 . + . ID=Phyra78194.1;Parent=Phyra78194;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_28 1 530368 scaffold_28 . biological_region 173 176 0.999 + . logic_name=eponine scaffold_28 . repeat_region 3579 3586 . ? . description=dust scaffold_28 . repeat_region 3616 3653 . ? . description=trf scaffold_28 . repeat_region 4556 4819 . ? . description=trf scaffold_28 . repeat_region 4556 4819 . ? . description=trf scaffold_28 . repeat_region 5627 5635 . ? . description=dust scaffold_28 . repeat_region 7053 7085 . ? . description=trf scaffold_28 . repeat_region 7053 7085 . ? . description=dust scaffold_28 . repeat_region 7240 7253 . ? . description=dust scaffold_28 . biological_region 8632 8637 0.999 - . logic_name=eponine scaffold_28 . biological_region 8886 8888 0.999 + . logic_name=eponine scaffold_28 . biological_region 8896 8897 0.999 - . logic_name=eponine scaffold_28 . biological_region 8951 8952 0.999 + . logic_name=eponine scaffold_28 ensembl protein_coding_gene 85 489 . - . ID=Phyra77953;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000001;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 85 489 . - . ID=Phyra77953;Parent=Phyra77953;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 85 489 . - 0 ID=Phyra77953;Parent=Phyra77953;rank=1 scaffold_28 . exon 85 489 . - . ID=Phyra77953.1;Parent=Phyra77953;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 15205 17397 . - . ID=Phyra77954;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000002;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 15205 17397 . - . ID=Phyra77954;Parent=Phyra77954;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 15205 17397 . - 0 ID=Phyra77954;Parent=Phyra77954;rank=1 scaffold_28 . exon 15205 17397 . - . ID=Phyra77954.1;Parent=Phyra77954;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 17675 19186 . - . ID=Phyra77955;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000003;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 17675 19186 . - . ID=Phyra77955;Parent=Phyra77955;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 17675 17767 . - 0 ID=Phyra77955;Parent=Phyra77955;rank=6 scaffold_28 . exon 17675 17767 . - . ID=Phyra77955.6;Parent=Phyra77955;constitutive=1;rank=6 scaffold_28 . CDS 17858 18135 . - 0 ID=Phyra77955;Parent=Phyra77955;rank=5 scaffold_28 . exon 17858 18135 . - . ID=Phyra77955.5;Parent=Phyra77955;constitutive=1;ensembl_phase=1;rank=5 scaffold_28 . CDS 18254 18575 . - 0 ID=Phyra77955;Parent=Phyra77955;rank=4 scaffold_28 . exon 18254 18575 . - . ID=Phyra77955.4;Parent=Phyra77955;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_28 . CDS 18654 18797 . - 0 ID=Phyra77955;Parent=Phyra77955;rank=3 scaffold_28 . exon 18654 18797 . - . ID=Phyra77955.3;Parent=Phyra77955;constitutive=1;rank=3 scaffold_28 . CDS 18875 18968 . - 0 ID=Phyra77955;Parent=Phyra77955;rank=2 scaffold_28 . exon 18875 18968 . - . ID=Phyra77955.2;Parent=Phyra77955;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 19041 19186 . - 0 ID=Phyra77955;Parent=Phyra77955;rank=1 scaffold_28 . exon 19041 19186 . - . ID=Phyra77955.1;Parent=Phyra77955;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . repeat_region 20336 20343 . ? . description=dust scaffold_28 . biological_region 22510 22514 0.999 - . logic_name=eponine scaffold_28 . repeat_region 22953 22971 . ? . description=dust scaffold_28 . repeat_region 23036 23043 . ? . description=dust scaffold_28 . biological_region 24737 24742 0.999 + . logic_name=eponine scaffold_28 . biological_region 29062 29069 0.999 + . logic_name=eponine scaffold_28 ensembl protein_coding_gene 20695 22905 . + . ID=Phyra77956;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000004;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 20695 22905 . + . ID=Phyra77956;Parent=Phyra77956;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 20695 22201 . + 0 ID=Phyra77956;Parent=Phyra77956;rank=1 scaffold_28 . exon 20695 22201 . + . ID=Phyra77956.1;Parent=Phyra77956;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 22271 22905 . + 0 ID=Phyra77956;Parent=Phyra77956;rank=2 scaffold_28 . exon 22271 22905 . + . ID=Phyra77956.2;Parent=Phyra77956;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 ensembl protein_coding_gene 23957 25081 . + . ID=Phyra77957;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000005;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 23957 25081 . + . ID=Phyra77957;Parent=Phyra77957;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 23957 25081 . + 0 ID=Phyra77957;Parent=Phyra77957;rank=1 scaffold_28 . exon 23957 25081 . + . ID=Phyra77957.1;Parent=Phyra77957;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 25540 26185 . + . ID=Phyra77958;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000006;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 25540 26185 . + . ID=Phyra77958;Parent=Phyra77958;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 25540 26118 . + 0 ID=Phyra77958;Parent=Phyra77958;rank=1 scaffold_28 . exon 25540 26118 . + . ID=Phyra77958.1;Parent=Phyra77958;constitutive=1;rank=1 scaffold_28 . CDS 26171 26185 . + 0 ID=Phyra77958;Parent=Phyra77958;rank=2 scaffold_28 . exon 26171 26185 . + . ID=Phyra77958.2;Parent=Phyra77958;constitutive=1;rank=2 scaffold_28 ensembl protein_coding_gene 27376 28545 . - . ID=Phyra77959;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000007;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 27376 28545 . - . ID=Phyra77959;Parent=Phyra77959;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 27376 28545 . - 0 ID=Phyra77959;Parent=Phyra77959;rank=1 scaffold_28 . exon 27376 28545 . - . ID=Phyra77959.1;Parent=Phyra77959;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 29021 30196 . - . ID=Phyra77960;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000008;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 29021 30196 . - . ID=Phyra77960;Parent=Phyra77960;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 29021 30196 . - 0 ID=Phyra77960;Parent=Phyra77960;rank=1 scaffold_28 . exon 29021 30196 . - . ID=Phyra77960.1;Parent=Phyra77960;constitutive=1;rank=1 scaffold_28 . repeat_region 30354 30393 . ? . description=trf scaffold_28 ensembl protein_coding_gene 35603 37336 . - . ID=Phyra71573;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_28000001;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 35603 37336 . - . ID=Phyra71573;Parent=Phyra71573;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 35603 36735 . - 0 ID=Phyra71573;Parent=Phyra71573;rank=4 scaffold_28 . exon 35603 36735 . - . ID=Phyra71573.4;Parent=Phyra71573;constitutive=1;ensembl_phase=1;rank=4 scaffold_28 . CDS 36804 36863 . - 0 ID=Phyra71573;Parent=Phyra71573;rank=3 scaffold_28 . exon 36804 36863 . - . ID=Phyra71573.3;Parent=Phyra71573;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_28 . CDS 36923 37130 . - 0 ID=Phyra71573;Parent=Phyra71573;rank=2 scaffold_28 . exon 36923 37130 . - . ID=Phyra71573.2;Parent=Phyra71573;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_28 . CDS 37268 37336 . - 0 ID=Phyra71573;Parent=Phyra71573;rank=1 scaffold_28 . exon 37268 37336 . - . ID=Phyra71573.1;Parent=Phyra71573;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 31026 32159 . - . ID=Phyra77961;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000009;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 31026 32159 . - . ID=Phyra77961;Parent=Phyra77961;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 31026 32159 . - 0 ID=Phyra77961;Parent=Phyra77961;rank=1 scaffold_28 . exon 31026 32159 . - . ID=Phyra77961.1;Parent=Phyra77961;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 33004 34848 . - . ID=Phyra77962;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000010;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 33004 34848 . - . ID=Phyra77962;Parent=Phyra77962;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 33004 34848 . - 0 ID=Phyra77962;Parent=Phyra77962;rank=1 scaffold_28 . exon 33004 34848 . - . ID=Phyra77962.1;Parent=Phyra77962;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 37757 39234 . + . ID=Phyra77964;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000012;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 37757 39234 . + . ID=Phyra77964;Parent=Phyra77964;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 37757 37765 . + 0 ID=Phyra77964;Parent=Phyra77964;rank=1 scaffold_28 . exon 37757 37765 . + . ID=Phyra77964.1;Parent=Phyra77964;constitutive=1;rank=1 scaffold_28 . CDS 37849 39234 . + 0 ID=Phyra77964;Parent=Phyra77964;rank=2 scaffold_28 . exon 37849 39234 . + . ID=Phyra77964.2;Parent=Phyra77964;constitutive=1;rank=2 scaffold_28 . biological_region 39752 39756 0.999 + . logic_name=eponine scaffold_28 . biological_region 39868 39876 0.999 - . logic_name=eponine scaffold_28 . biological_region 42411 42412 0.999 - . logic_name=eponine scaffold_28 . biological_region 48696 48702 0.999 - . logic_name=eponine scaffold_28 . biological_region 48754 48755 0.999 - . logic_name=eponine scaffold_28 ensembl protein_coding_gene 39472 40710 . - . ID=Phyra77965;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000013;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 39472 40710 . - . ID=Phyra77965;Parent=Phyra77965;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 39472 40710 . - 0 ID=Phyra77965;Parent=Phyra77965;rank=1 scaffold_28 . exon 39472 40710 . - . ID=Phyra77965.1;Parent=Phyra77965;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 42240 43502 . - . ID=Phyra77966;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000014;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 42240 43502 . - . ID=Phyra77966;Parent=Phyra77966;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 42240 43502 . - 0 ID=Phyra77966;Parent=Phyra77966;rank=1 scaffold_28 . exon 42240 43502 . - . ID=Phyra77966.1;Parent=Phyra77966;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 44746 46073 . + . ID=Phyra77967;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000015;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 44746 46073 . + . ID=Phyra77967;Parent=Phyra77967;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 44746 45039 . + 0 ID=Phyra77967;Parent=Phyra77967;rank=1 scaffold_28 . exon 44746 45039 . + . ID=Phyra77967.1;Parent=Phyra77967;constitutive=1;rank=1 scaffold_28 . CDS 45394 46030 . + 0 ID=Phyra77967;Parent=Phyra77967;rank=2 scaffold_28 . exon 45394 46030 . + . ID=Phyra77967.2;Parent=Phyra77967;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_28 . CDS 46066 46073 . + 0 ID=Phyra77967;Parent=Phyra77967;rank=3 scaffold_28 . exon 46066 46073 . + . ID=Phyra77967.3;Parent=Phyra77967;constitutive=1;ensembl_phase=1;rank=3 scaffold_28 ensembl protein_coding_gene 47189 48409 . - . ID=Phyra77968;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000016;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 47189 48409 . - . ID=Phyra77968;Parent=Phyra77968;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 47189 48409 . - 0 ID=Phyra77968;Parent=Phyra77968;rank=1 scaffold_28 . exon 47189 48409 . - . ID=Phyra77968.1;Parent=Phyra77968;constitutive=1;rank=1 scaffold_28 . repeat_region 50143 50154 . ? . description=dust scaffold_28 . repeat_region 50732 50746 . ? . description=dust scaffold_28 ensembl protein_coding_gene 51644 52516 . - . ID=Phyra77969;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000017;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 51644 52516 . - . ID=Phyra77969;Parent=Phyra77969;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 51644 52516 . - 0 ID=Phyra77969;Parent=Phyra77969;rank=1 scaffold_28 . exon 51644 52516 . - . ID=Phyra77969.1;Parent=Phyra77969;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 53728 55667 . + . ID=Phyra77970;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000018;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 53728 55667 . + . ID=Phyra77970;Parent=Phyra77970;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 53728 54134 . + 0 ID=Phyra77970;Parent=Phyra77970;rank=1 scaffold_28 . exon 53728 54134 . + . ID=Phyra77970.1;Parent=Phyra77970;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . CDS 54185 55667 . + 0 ID=Phyra77970;Parent=Phyra77970;rank=2 scaffold_28 . exon 54185 55667 . + . ID=Phyra77970.2;Parent=Phyra77970;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . repeat_region 69832 69839 . ? . description=dust scaffold_28 . biological_region 72484 72484 0.999 - . logic_name=eponine scaffold_28 ensembl protein_coding_gene 77269 78047 . + . ID=Phyra77971;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000019;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 77269 78047 . + . ID=Phyra77971;Parent=Phyra77971;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 77269 77812 . + 0 ID=Phyra77971;Parent=Phyra77971;rank=1 scaffold_28 . exon 77269 77812 . + . ID=Phyra77971.1;Parent=Phyra77971;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 77899 78047 . + 0 ID=Phyra77971;Parent=Phyra77971;rank=2 scaffold_28 . exon 77899 78047 . + . ID=Phyra77971.2;Parent=Phyra77971;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 ensembl protein_coding_gene 82813 85591 . - . ID=Phyra77972;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000020;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 82813 85591 . - . ID=Phyra77972;Parent=Phyra77972;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 82813 83148 . - 0 ID=Phyra77972;Parent=Phyra77972;rank=4 scaffold_28 . exon 82813 83148 . - . ID=Phyra77972.4;Parent=Phyra77972;constitutive=1;rank=4 scaffold_28 . CDS 83201 84926 . - 0 ID=Phyra77972;Parent=Phyra77972;rank=3 scaffold_28 . exon 83201 84926 . - . ID=Phyra77972.3;Parent=Phyra77972;constitutive=1;ensembl_phase=2;rank=3 scaffold_28 . CDS 85048 85484 . - 0 ID=Phyra77972;Parent=Phyra77972;rank=2 scaffold_28 . exon 85048 85484 . - . ID=Phyra77972.2;Parent=Phyra77972;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_28 . CDS 85562 85591 . - 0 ID=Phyra77972;Parent=Phyra77972;rank=1 scaffold_28 . exon 85562 85591 . - . ID=Phyra77972.1;Parent=Phyra77972;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 85943 87489 . - . ID=Phyra77973;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000021;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 85943 87489 . - . ID=Phyra77973;Parent=Phyra77973;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 85943 86275 . - 0 ID=Phyra77973;Parent=Phyra77973;rank=3 scaffold_28 . exon 85943 86275 . - . ID=Phyra77973.3;Parent=Phyra77973;constitutive=1;rank=3 scaffold_28 . CDS 86343 86703 . - 0 ID=Phyra77973;Parent=Phyra77973;rank=2 scaffold_28 . exon 86343 86703 . - . ID=Phyra77973.2;Parent=Phyra77973;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 86765 87489 . - 0 ID=Phyra77973;Parent=Phyra77973;rank=1 scaffold_28 . exon 86765 87489 . - . ID=Phyra77973.1;Parent=Phyra77973;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 ensembl protein_coding_gene 87701 88951 . - . ID=Phyra77974;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000022;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 87701 88951 . - . ID=Phyra77974;Parent=Phyra77974;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 87701 88951 . - 0 ID=Phyra77974;Parent=Phyra77974;rank=1 scaffold_28 . exon 87701 88951 . - . ID=Phyra77974.1;Parent=Phyra77974;constitutive=1;rank=1 scaffold_28 . biological_region 89636 89638 0.999 + . logic_name=eponine scaffold_28 . biological_region 90125 90129 0.999 + . logic_name=eponine scaffold_28 . biological_region 94117 94118 0.999 + . logic_name=eponine scaffold_28 . biological_region 94283 94288 0.999 - . logic_name=eponine scaffold_28 . biological_region 94600 94605 0.999 - . logic_name=eponine scaffold_28 . repeat_region 94992 95011 . ? . description=trf scaffold_28 . repeat_region 97412 97424 . ? . description=dust scaffold_28 ensembl protein_coding_gene 96917 99027 . + . ID=Phyra71574;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_28000002;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 96917 99027 . + . ID=Phyra71574;Parent=Phyra71574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 96917 96995 . + 0 ID=Phyra71574;Parent=Phyra71574;rank=1 scaffold_28 . exon 96917 96995 . + . ID=Phyra71574.1;Parent=Phyra71574;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 97069 97210 . + 0 ID=Phyra71574;Parent=Phyra71574;rank=2 scaffold_28 . exon 97069 97210 . + . ID=Phyra71574.2;Parent=Phyra71574;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_28 . CDS 97277 97370 . + 0 ID=Phyra71574;Parent=Phyra71574;rank=3 scaffold_28 . exon 97277 97370 . + . ID=Phyra71574.3;Parent=Phyra71574;constitutive=1;ensembl_phase=2;rank=3 scaffold_28 . CDS 97437 97964 . + 0 ID=Phyra71574;Parent=Phyra71574;rank=4 scaffold_28 . exon 97437 97964 . + . ID=Phyra71574.4;Parent=Phyra71574;constitutive=1;rank=4 scaffold_28 . CDS 98037 98205 . + 0 ID=Phyra71574;Parent=Phyra71574;rank=5 scaffold_28 . exon 98037 98205 . + . ID=Phyra71574.5;Parent=Phyra71574;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_28 . CDS 98384 99027 . + 0 ID=Phyra71574;Parent=Phyra71574;rank=6 scaffold_28 ensembl protein_coding_gene 89456 91357 . + . ID=Phyra77975;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000023;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 89456 91357 . + . ID=Phyra77975;Parent=Phyra77975;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 89456 90346 . + 0 ID=Phyra77975;Parent=Phyra77975;rank=1 scaffold_28 . exon 89456 90346 . + . ID=Phyra77975.1;Parent=Phyra77975;constitutive=1;rank=1 scaffold_28 . CDS 90420 90508 . + 0 ID=Phyra77975;Parent=Phyra77975;rank=2 scaffold_28 . exon 90420 90508 . + . ID=Phyra77975.2;Parent=Phyra77975;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_28 . CDS 90578 90856 . + 0 ID=Phyra77975;Parent=Phyra77975;rank=3 scaffold_28 . exon 90578 90856 . + . ID=Phyra77975.3;Parent=Phyra77975;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_28 . CDS 90946 91357 . + 0 ID=Phyra77975;Parent=Phyra77975;rank=4 scaffold_28 . exon 90946 91357 . + . ID=Phyra77975.4;Parent=Phyra77975;constitutive=1;ensembl_phase=2;rank=4 scaffold_28 ensembl protein_coding_gene 91913 93751 . + . ID=Phyra77976;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000024;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 91913 93751 . + . ID=Phyra77976;Parent=Phyra77976;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 91913 93751 . + 0 ID=Phyra77976;Parent=Phyra77976;rank=1 scaffold_28 . exon 91913 93751 . + . ID=Phyra77976.1;Parent=Phyra77976;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 93942 94703 . - . ID=Phyra77977;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000025;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 93942 94703 . - . ID=Phyra77977;Parent=Phyra77977;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 93942 94703 . - 0 ID=Phyra77977;Parent=Phyra77977;rank=1 scaffold_28 . exon 93942 94703 . - . ID=Phyra77977.1;Parent=Phyra77977;constitutive=1;rank=1 scaffold_28 . exon 98384 99027 . + . ID=Phyra71574.6;Parent=Phyra71574;constitutive=1;ensembl_phase=1;rank=6 scaffold_28 ensembl protein_coding_gene 99197 101391 . - . ID=Phyra77979;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000027;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 99197 101391 . - . ID=Phyra77979;Parent=Phyra77979;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 99197 99969 . - 0 ID=Phyra77979;Parent=Phyra77979;rank=2 scaffold_28 . exon 99197 99969 . - . ID=Phyra77979.2;Parent=Phyra77979;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 100167 101391 . - 0 ID=Phyra77979;Parent=Phyra77979;rank=1 scaffold_28 . exon 100167 101391 . - . ID=Phyra77979.1;Parent=Phyra77979;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 ensembl protein_coding_gene 101579 103534 . - . ID=Phyra77980;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000028;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 101579 103534 . - . ID=Phyra77980;Parent=Phyra77980;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 101579 103534 . - 0 ID=Phyra77980;Parent=Phyra77980;rank=1 scaffold_28 . exon 101579 103534 . - . ID=Phyra77980.1;Parent=Phyra77980;constitutive=1;rank=1 scaffold_28 . repeat_region 108845 108853 . ? . description=dust scaffold_28 . repeat_region 109720 109729 . ? . description=dust scaffold_28 . repeat_region 110249 110280 . ? . description=trf scaffold_28 . repeat_region 110272 110283 . ? . description=dust scaffold_28 . biological_region 111379 111380 0.999 - . logic_name=eponine scaffold_28 . biological_region 113042 113045 0.999 + . logic_name=eponine scaffold_28 . biological_region 114471 114475 0.999 - . logic_name=eponine scaffold_28 . repeat_region 117590 117663 . ? . description=trf scaffold_28 . repeat_region 117674 117717 . ? . description=trf scaffold_28 . biological_region 117831 117833 0.999 - . logic_name=eponine scaffold_28 ensembl protein_coding_gene 112168 113352 . + . ID=Phyra71575;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_28000003;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 112168 113352 . + . ID=Phyra71575;Parent=Phyra71575;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 112168 113352 . + 0 ID=Phyra71575;Parent=Phyra71575;rank=1 scaffold_28 . exon 112168 113352 . + . ID=Phyra71575.1;Parent=Phyra71575;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 110801 111694 . + . ID=Phyra77981;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000029;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 110801 111694 . + . ID=Phyra77981;Parent=Phyra77981;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 110801 111694 . + 0 ID=Phyra77981;Parent=Phyra77981;rank=1 scaffold_28 . exon 110801 111694 . + . ID=Phyra77981.1;Parent=Phyra77981;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 113835 115802 . + . ID=Phyra77983;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000031;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 113835 115802 . + . ID=Phyra77983;Parent=Phyra77983;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 113835 114790 . + 0 ID=Phyra77983;Parent=Phyra77983;rank=1 scaffold_28 . exon 113835 114790 . + . ID=Phyra77983.1;Parent=Phyra77983;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . CDS 114972 115213 . + 0 ID=Phyra77983;Parent=Phyra77983;rank=2 scaffold_28 . exon 114972 115213 . + . ID=Phyra77983.2;Parent=Phyra77983;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 115276 115347 . + 0 ID=Phyra77983;Parent=Phyra77983;rank=3 scaffold_28 . exon 115276 115347 . + . ID=Phyra77983.3;Parent=Phyra77983;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_28 . CDS 115411 115588 . + 0 ID=Phyra77983;Parent=Phyra77983;rank=4 scaffold_28 . exon 115411 115588 . + . ID=Phyra77983.4;Parent=Phyra77983;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_28 . CDS 115664 115802 . + 0 ID=Phyra77983;Parent=Phyra77983;rank=5 scaffold_28 . exon 115664 115802 . + . ID=Phyra77983.5;Parent=Phyra77983;constitutive=1;ensembl_phase=2;rank=5 scaffold_28 ensembl protein_coding_gene 116888 118576 . + . ID=Phyra77984;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000032;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 116888 118576 . + . ID=Phyra77984;Parent=Phyra77984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 116888 118576 . + 0 ID=Phyra77984;Parent=Phyra77984;rank=1 scaffold_28 . exon 116888 118576 . + . ID=Phyra77984.1;Parent=Phyra77984;constitutive=1;rank=1 scaffold_28 ensembl pseudogene 127232 127745 . + . ID=Phyra46368;biotype=pseudogene;external_name=gwEuk.28.85.1;logic_name=jgi_phyra1 scaffold_28 ensembl pseudogene 127232 127745 . + . ID=Phyra46368;Parent=Phyra46368;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_28 . exon 127232 127745 . + . ID=Phyra46368.1;Parent=Phyra46368;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 ensembl protein_coding_gene 124096 124908 . - . ID=Phyra71576;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_28000004;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 124096 124908 . - . ID=Phyra71576;Parent=Phyra71576;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 124096 124194 . - 0 ID=Phyra71576;Parent=Phyra71576;rank=2 scaffold_28 . exon 124096 124194 . - . ID=Phyra71576.2;Parent=Phyra71576;constitutive=1;rank=2 scaffold_28 . CDS 124222 124908 . - 0 ID=Phyra71576;Parent=Phyra71576;rank=1 scaffold_28 . exon 124222 124908 . - . ID=Phyra71576.1;Parent=Phyra71576;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 119278 121377 . + . ID=Phyra77985;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000033;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 119278 121377 . + . ID=Phyra77985;Parent=Phyra77985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 119278 121377 . + 0 ID=Phyra77985;Parent=Phyra77985;rank=1 scaffold_28 . exon 119278 121377 . + . ID=Phyra77985.1;Parent=Phyra77985;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 121967 123919 . + . ID=Phyra77986;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000034;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 121967 123919 . + . ID=Phyra77986;Parent=Phyra77986;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 121967 123919 . + 0 ID=Phyra77986;Parent=Phyra77986;rank=1 scaffold_28 . exon 121967 123919 . + . ID=Phyra77986.1;Parent=Phyra77986;constitutive=1;rank=1 scaffold_28 . biological_region 131506 131507 0.999 - . logic_name=eponine scaffold_28 . biological_region 131624 131625 0.999 + . logic_name=eponine scaffold_28 . biological_region 131772 131774 0.999 - . logic_name=eponine scaffold_28 . biological_region 132177 132183 0.999 + . logic_name=eponine scaffold_28 . repeat_region 132298 132328 . ? . description=trf scaffold_28 . biological_region 132300 132306 0.999 - . logic_name=eponine scaffold_28 . biological_region 132311 132313 0.999 + . logic_name=eponine scaffold_28 . biological_region 132338 132347 0.999 - . logic_name=eponine scaffold_28 . repeat_region 132407 132423 . ? . description=dust scaffold_28 . biological_region 132915 132920 0.999 + . logic_name=eponine scaffold_28 . repeat_region 134117 135126 . ? . description=dust scaffold_28 . repeat_region 136615 136622 . ? . description=dust scaffold_28 ensembl protein_coding_gene 130897 131865 . + . ID=Phyra77989;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000037;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 130897 131865 . + . ID=Phyra77989;Parent=Phyra77989;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 130897 131865 . + 0 ID=Phyra77989;Parent=Phyra77989;rank=1 scaffold_28 . exon 130897 131865 . + . ID=Phyra77989.1;Parent=Phyra77989;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 132183 133336 . + . ID=Phyra77990;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000038;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 132183 133336 . + . ID=Phyra77990;Parent=Phyra77990;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 132183 132393 . + 0 ID=Phyra77990;Parent=Phyra77990;rank=1 scaffold_28 . exon 132183 132393 . + . ID=Phyra77990.1;Parent=Phyra77990;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 132480 133336 . + 0 ID=Phyra77990;Parent=Phyra77990;rank=2 scaffold_28 . exon 132480 133336 . + . ID=Phyra77990.2;Parent=Phyra77990;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 ensembl protein_coding_gene 136473 137395 . + . ID=Phyra77991;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000039;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 136473 137395 . + . ID=Phyra77991;Parent=Phyra77991;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 136473 136609 . + 0 ID=Phyra77991;Parent=Phyra77991;rank=1 scaffold_28 . exon 136473 136609 . + . ID=Phyra77991.1;Parent=Phyra77991;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . CDS 136677 136801 . + 0 ID=Phyra77991;Parent=Phyra77991;rank=2 scaffold_28 . exon 136677 136801 . + . ID=Phyra77991.2;Parent=Phyra77991;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 136860 136931 . + 0 ID=Phyra77991;Parent=Phyra77991;rank=3 scaffold_28 . exon 136860 136931 . + . ID=Phyra77991.3;Parent=Phyra77991;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_28 . CDS 136996 137173 . + 0 ID=Phyra77991;Parent=Phyra77991;rank=4 scaffold_28 . exon 136996 137173 . + . ID=Phyra77991.4;Parent=Phyra77991;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_28 . CDS 137257 137395 . + 0 ID=Phyra77991;Parent=Phyra77991;rank=5 scaffold_28 . exon 137257 137395 . + . ID=Phyra77991.5;Parent=Phyra77991;constitutive=1;ensembl_phase=2;rank=5 scaffold_28 ensembl protein_coding_gene 138218 139360 . + . ID=Phyra71577;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_28000005;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 138218 139360 . + . ID=Phyra71577;Parent=Phyra71577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 138218 139360 . + 0 ID=Phyra71577;Parent=Phyra71577;rank=1 scaffold_28 . exon 138218 139360 . + . ID=Phyra71577.1;Parent=Phyra71577;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 139490 140586 . - . ID=Phyra77993;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000041;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 139490 140586 . - . ID=Phyra77993;Parent=Phyra77993;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 139490 140586 . - 0 ID=Phyra77993;Parent=Phyra77993;rank=1 scaffold_28 . exon 139490 140586 . - . ID=Phyra77993.1;Parent=Phyra77993;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 ensembl protein_coding_gene 144074 150745 . + . ID=Phyra77994;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000042;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 144074 150745 . + . ID=Phyra77994;Parent=Phyra77994;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 144074 150745 . + 0 ID=Phyra77994;Parent=Phyra77994;rank=1 scaffold_28 . exon 144074 150745 . + . ID=Phyra77994.1;Parent=Phyra77994;constitutive=1;rank=1 scaffold_28 . biological_region 148565 148566 0.999 - . logic_name=eponine scaffold_28 . biological_region 150587 150590 0.999 + . logic_name=eponine scaffold_28 . biological_region 150701 150702 0.999 - . logic_name=eponine scaffold_28 . biological_region 150716 150720 0.999 - . logic_name=eponine scaffold_28 . biological_region 154767 154770 0.999 - . logic_name=eponine scaffold_28 . biological_region 155652 155654 0.999 + . logic_name=eponine scaffold_28 . biological_region 155656 155660 0.999 - . logic_name=eponine scaffold_28 . biological_region 155715 155716 0.999 + . logic_name=eponine scaffold_28 . repeat_region 155806 155840 . ? . description=dust scaffold_28 . repeat_region 155811 155839 . ? . description=trf scaffold_28 . repeat_region 155857 155888 . ? . description=trf scaffold_28 . biological_region 156287 156290 0.999 + . logic_name=eponine scaffold_28 . biological_region 156363 156367 0.999 - . logic_name=eponine scaffold_28 . biological_region 156833 156836 0.999 + . logic_name=eponine scaffold_28 . biological_region 156861 156868 0.999 + . logic_name=eponine scaffold_28 . biological_region 156878 156879 0.999 + . logic_name=eponine scaffold_28 . biological_region 156883 156888 0.999 - . logic_name=eponine scaffold_28 . biological_region 156909 156915 0.999 - . logic_name=eponine scaffold_28 . biological_region 156920 156924 0.999 + . logic_name=eponine scaffold_28 . biological_region 156937 156950 0.999 - . logic_name=eponine scaffold_28 . biological_region 157009 157012 0.999 - . logic_name=eponine scaffold_28 ensembl protein_coding_gene 153834 154164 . + . ID=Phyra46380;biotype=protein_coding;external_name=gwEuk.28.97.1;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 153834 154164 . + . ID=Phyra46380;Parent=Phyra46380;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 153834 153941 . + 0 ID=Phyra46380;Parent=Phyra46380;rank=1 scaffold_28 . exon 153834 153941 . + . ID=Phyra46380.1;Parent=Phyra46380;constitutive=1;rank=1 scaffold_28 . CDS 154012 154164 . + 0 ID=Phyra46380;Parent=Phyra46380;rank=2 scaffold_28 . exon 154012 154164 . + . ID=Phyra46380.2;Parent=Phyra46380;constitutive=1;rank=2 scaffold_28 ensembl protein_coding_gene 151434 152630 . - . ID=Phyra77995;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000043;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 151434 152630 . - . ID=Phyra77995;Parent=Phyra77995;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 151434 151991 . - 0 ID=Phyra77995;Parent=Phyra77995;rank=4 scaffold_28 . exon 151434 151991 . - . ID=Phyra77995.4;Parent=Phyra77995;constitutive=1;rank=4 scaffold_28 . CDS 152060 152317 . - 0 ID=Phyra77995;Parent=Phyra77995;rank=3 scaffold_28 . exon 152060 152317 . - . ID=Phyra77995.3;Parent=Phyra77995;constitutive=1;rank=3 scaffold_28 . CDS 152381 152450 . - 0 ID=Phyra77995;Parent=Phyra77995;rank=2 scaffold_28 . exon 152381 152450 . - . ID=Phyra77995.2;Parent=Phyra77995;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 152521 152630 . - 0 ID=Phyra77995;Parent=Phyra77995;rank=1 scaffold_28 . exon 152521 152630 . - . ID=Phyra77995.1;Parent=Phyra77995;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 ensembl protein_coding_gene 154338 157064 . - . ID=Phyra77997;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000045;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 154338 157064 . - . ID=Phyra77997;Parent=Phyra77997;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 154338 155444 . - 0 ID=Phyra77997;Parent=Phyra77997;rank=2 scaffold_28 . exon 154338 155444 . - . ID=Phyra77997.2;Parent=Phyra77997;constitutive=1;rank=2 scaffold_28 . CDS 155514 157064 . - 0 ID=Phyra77997;Parent=Phyra77997;rank=1 scaffold_28 . exon 155514 157064 . - . ID=Phyra77997.1;Parent=Phyra77997;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 158100 161429 . - . ID=Phyra77998;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000046;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 158100 161429 . - . ID=Phyra77998;Parent=Phyra77998;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 158100 161429 . - 0 ID=Phyra77998;Parent=Phyra77998;rank=1 scaffold_28 . exon 158100 161429 . - . ID=Phyra77998.1;Parent=Phyra77998;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 165013 168093 . - . ID=Phyra77999;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000047;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 165013 168093 . - . ID=Phyra77999;Parent=Phyra77999;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 165013 168093 . - 0 ID=Phyra77999;Parent=Phyra77999;rank=1 scaffold_28 . exon 165013 168093 . - . ID=Phyra77999.1;Parent=Phyra77999;constitutive=1;rank=1 scaffold_28 . repeat_region 174474 174485 . ? . description=dust scaffold_28 . biological_region 176215 176220 0.999 - . logic_name=eponine scaffold_28 . biological_region 176273 176274 0.999 + . logic_name=eponine scaffold_28 . biological_region 176277 176282 0.999 - . logic_name=eponine scaffold_28 . biological_region 176533 176535 0.999 - . logic_name=eponine scaffold_28 . biological_region 176611 176613 0.999 + . logic_name=eponine scaffold_28 ensembl protein_coding_gene 169778 170800 . - . ID=Phyra78000;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000048;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 169778 170800 . - . ID=Phyra78000;Parent=Phyra78000;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 169778 170800 . - 0 ID=Phyra78000;Parent=Phyra78000;rank=1 scaffold_28 . exon 169778 170800 . - . ID=Phyra78000.1;Parent=Phyra78000;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 174821 175549 . - . ID=Phyra78001;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000049;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 174821 175549 . - . ID=Phyra78001;Parent=Phyra78001;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 174821 174841 . - 0 ID=Phyra78001;Parent=Phyra78001;rank=3 scaffold_28 . exon 174821 174841 . - . ID=Phyra78001.3;Parent=Phyra78001;constitutive=1;rank=3 scaffold_28 . CDS 174948 175138 . - 0 ID=Phyra78001;Parent=Phyra78001;rank=2 scaffold_28 . exon 174948 175138 . - . ID=Phyra78001.2;Parent=Phyra78001;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 175195 175549 . - 0 ID=Phyra78001;Parent=Phyra78001;rank=1 scaffold_28 . exon 175195 175549 . - . ID=Phyra78001.1;Parent=Phyra78001;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 ensembl protein_coding_gene 176106 179036 . + . ID=Phyra78002;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000050;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 176106 179036 . + . ID=Phyra78002;Parent=Phyra78002;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 176106 179036 . + 0 ID=Phyra78002;Parent=Phyra78002;rank=1 scaffold_28 . exon 176106 179036 . + . ID=Phyra78002.1;Parent=Phyra78002;constitutive=1;rank=1 scaffold_28 . repeat_region 176866 176908 . + . description=(CAG)n scaffold_28 . repeat_region 176883 176906 . ? . description=trf scaffold_28 . repeat_region 184228 184254 . ? . description=trf scaffold_28 ensembl protein_coding_gene 181564 184056 . + . ID=Phyra78004;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000052;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 181564 184056 . + . ID=Phyra78004;Parent=Phyra78004;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 181564 184056 . + 0 ID=Phyra78004;Parent=Phyra78004;rank=1 scaffold_28 . exon 181564 184056 . + . ID=Phyra78004.1;Parent=Phyra78004;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 179655 180871 . - . ID=Phyra94990;biotype=protein_coding;external_name=C_scaffold_28000003;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 179655 180871 . - . ID=Phyra94990;Parent=Phyra94990;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 179655 180092 . - 0 ID=Phyra94990;Parent=Phyra94990;rank=3 scaffold_28 . exon 179655 180092 . - . ID=Phyra94990.3;Parent=Phyra94990;constitutive=1;rank=3 scaffold_28 . CDS 180165 180812 . - 0 ID=Phyra94990;Parent=Phyra94990;rank=2 scaffold_28 . exon 180165 180812 . - . ID=Phyra94990.2;Parent=Phyra94990;constitutive=1;rank=2 scaffold_28 . CDS 180869 180871 . - 0 ID=Phyra94990;Parent=Phyra94990;rank=1 scaffold_28 . exon 180869 180871 . - . ID=Phyra94990.1;Parent=Phyra94990;constitutive=1;rank=1 scaffold_28 . repeat_region 184302 196081 . ? . description=dust scaffold_28 ensembl protein_coding_gene 196279 199131 . + . ID=Phyra46286;biotype=protein_coding;external_name=gwEuk.28.3.1;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 196279 199131 . + . ID=Phyra46286;Parent=Phyra46286;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 196279 197106 . + 0 ID=Phyra46286;Parent=Phyra46286;rank=1 scaffold_28 . exon 196279 197106 . + . ID=Phyra46286.1;Parent=Phyra46286;constitutive=1;rank=1 scaffold_28 . CDS 197179 198441 . + 0 ID=Phyra46286;Parent=Phyra46286;rank=2 scaffold_28 . CDS 198514 199131 . + 0 ID=Phyra46286;Parent=Phyra46286;rank=3 scaffold_28 . biological_region 196504 196509 0.999 + . logic_name=eponine scaffold_28 . biological_region 196533 196536 0.999 - . logic_name=eponine scaffold_28 . biological_region 202563 202569 0.999 + . logic_name=eponine scaffold_28 . biological_region 202916 202920 0.999 + . logic_name=eponine scaffold_28 . biological_region 202935 202938 0.999 + . logic_name=eponine scaffold_28 . exon 197179 198441 . + . ID=Phyra46286.2;Parent=Phyra46286;constitutive=1;rank=2 scaffold_28 . exon 198514 199131 . + . ID=Phyra46286.3;Parent=Phyra46286;constitutive=1;rank=3 scaffold_28 ensembl protein_coding_gene 199557 203132 . - . ID=Phyra78006;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000054;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 199557 203132 . - . ID=Phyra78006;Parent=Phyra78006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 199557 203132 . - 0 ID=Phyra78006;Parent=Phyra78006;rank=1 scaffold_28 . exon 199557 203132 . - . ID=Phyra78006.1;Parent=Phyra78006;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 203347 206126 . - . ID=Phyra78007;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000055;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 203347 206126 . - . ID=Phyra78007;Parent=Phyra78007;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 203347 205746 . - 0 ID=Phyra78007;Parent=Phyra78007;rank=3 scaffold_28 . exon 203347 205746 . - . ID=Phyra78007.3;Parent=Phyra78007;constitutive=1;rank=3 scaffold_28 . CDS 205815 206012 . - 0 ID=Phyra78007;Parent=Phyra78007;rank=2 scaffold_28 . exon 205815 206012 . - . ID=Phyra78007.2;Parent=Phyra78007;constitutive=1;rank=2 scaffold_28 . CDS 206073 206126 . - 0 ID=Phyra78007;Parent=Phyra78007;rank=1 scaffold_28 . exon 206073 206126 . - . ID=Phyra78007.1;Parent=Phyra78007;constitutive=1;rank=1 scaffold_28 . repeat_region 208836 208862 . ? . description=trf scaffold_28 . repeat_region 208836 208862 . ? . description=dust scaffold_28 . repeat_region 215471 215542 . ? . description=trf scaffold_28 . repeat_region 215776 215794 . ? . description=dust scaffold_28 ensembl protein_coding_gene 206526 208661 . - . ID=Phyra78008;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000056;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 206526 208661 . - . ID=Phyra78008;Parent=Phyra78008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 206526 208661 . - 0 ID=Phyra78008;Parent=Phyra78008;rank=1 scaffold_28 . exon 206526 208661 . - . ID=Phyra78008.1;Parent=Phyra78008;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 210201 211667 . - . ID=Phyra78009;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000057;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 210201 211667 . - . ID=Phyra78009;Parent=Phyra78009;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 210201 211667 . - 0 ID=Phyra78009;Parent=Phyra78009;rank=1 scaffold_28 . exon 210201 211667 . - . ID=Phyra78009.1;Parent=Phyra78009;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 213563 214966 . - . ID=Phyra78010;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000058;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 213563 214966 . - . ID=Phyra78010;Parent=Phyra78010;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 213563 214966 . - 0 ID=Phyra78010;Parent=Phyra78010;rank=1 scaffold_28 . exon 213563 214966 . - . ID=Phyra78010.1;Parent=Phyra78010;constitutive=1;rank=1 scaffold_28 . biological_region 216950 216952 0.999 + . logic_name=eponine scaffold_28 . biological_region 217462 217462 0.999 + . logic_name=eponine scaffold_28 . biological_region 217527 217530 0.999 - . logic_name=eponine scaffold_28 . biological_region 220738 220743 0.999 + . logic_name=eponine scaffold_28 . biological_region 225447 225450 0.999 + . logic_name=eponine scaffold_28 ensembl protein_coding_gene 220999 222045 . + . ID=Phyra46292;biotype=protein_coding;external_name=gwEuk.28.9.1;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 220999 222045 . + . ID=Phyra46292;Parent=Phyra46292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 220999 222045 . + 0 ID=Phyra46292;Parent=Phyra46292;rank=1 scaffold_28 . exon 220999 222045 . + . ID=Phyra46292.1;Parent=Phyra46292;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 216957 218219 . + . ID=Phyra78011;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000059;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 216957 218219 . + . ID=Phyra78011;Parent=Phyra78011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 216957 218219 . + 0 ID=Phyra78011;Parent=Phyra78011;rank=1 scaffold_28 . exon 216957 218219 . + . ID=Phyra78011.1;Parent=Phyra78011;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 218368 219189 . - . ID=Phyra78012;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000060;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 218368 219189 . - . ID=Phyra78012;Parent=Phyra78012;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 218368 219189 . - 0 ID=Phyra78012;Parent=Phyra78012;rank=1 scaffold_28 . exon 218368 219189 . - . ID=Phyra78012.1;Parent=Phyra78012;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 225187 226374 . + . ID=Phyra78015;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000063;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 225187 226374 . + . ID=Phyra78015;Parent=Phyra78015;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 225187 225284 . + 0 ID=Phyra78015;Parent=Phyra78015;rank=1 scaffold_28 . exon 225187 225284 . + . ID=Phyra78015.1;Parent=Phyra78015;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . CDS 225349 225581 . + 0 ID=Phyra78015;Parent=Phyra78015;rank=2 scaffold_28 . exon 225349 225581 . + . ID=Phyra78015.2;Parent=Phyra78015;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 225659 226374 . + 0 ID=Phyra78015;Parent=Phyra78015;rank=3 scaffold_28 . exon 225659 226374 . + . ID=Phyra78015.3;Parent=Phyra78015;constitutive=1;ensembl_phase=1;rank=3 scaffold_28 ensembl protein_coding_gene 222385 224040 . + . ID=Phyra94996;biotype=protein_coding;external_name=C_scaffold_28000009;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 222385 224040 . + . ID=Phyra94996;Parent=Phyra94996;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 222385 222457 . + 0 ID=Phyra94996;Parent=Phyra94996;rank=1 scaffold_28 . exon 222385 222457 . + . ID=Phyra94996.1;Parent=Phyra94996;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 222539 222733 . + 0 ID=Phyra94996;Parent=Phyra94996;rank=2 scaffold_28 . exon 222539 222733 . + . ID=Phyra94996.2;Parent=Phyra94996;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 222989 223132 . + 0 ID=Phyra94996;Parent=Phyra94996;rank=3 scaffold_28 . exon 222989 223132 . + . ID=Phyra94996.3;Parent=Phyra94996;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_28 . CDS 223211 223369 . + 0 ID=Phyra94996;Parent=Phyra94996;rank=4 scaffold_28 . exon 223211 223369 . + . ID=Phyra94996.4;Parent=Phyra94996;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_28 . CDS 223547 223859 . + 0 ID=Phyra94996;Parent=Phyra94996;rank=5 scaffold_28 . exon 223547 223859 . + . ID=Phyra94996.5;Parent=Phyra94996;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_28 . CDS 223890 224040 . + 0 ID=Phyra94996;Parent=Phyra94996;rank=6 scaffold_28 . exon 223890 224040 . + . ID=Phyra94996.6;Parent=Phyra94996;constitutive=1;ensembl_phase=2;rank=6 scaffold_28 ensembl protein_coding_gene 226623 227412 . - . ID=Phyra78016;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000064;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 226623 227412 . - . ID=Phyra78016;Parent=Phyra78016;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 226623 227266 . - 0 ID=Phyra78016;Parent=Phyra78016;rank=2 scaffold_28 . exon 226623 227266 . - . ID=Phyra78016.2;Parent=Phyra78016;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 227346 227412 . - 0 ID=Phyra78016;Parent=Phyra78016;rank=1 scaffold_28 . exon 227346 227412 . - . ID=Phyra78016.1;Parent=Phyra78016;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 ensembl protein_coding_gene 228598 229782 . - . ID=Phyra78017;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000065;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 228598 229782 . - . ID=Phyra78017;Parent=Phyra78017;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 228598 229782 . - 0 ID=Phyra78017;Parent=Phyra78017;rank=1 scaffold_28 . exon 228598 229782 . - . ID=Phyra78017.1;Parent=Phyra78017;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 231717 232943 . - . ID=Phyra78018;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000066;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 231717 232943 . - . ID=Phyra78018;Parent=Phyra78018;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 231717 232943 . - 0 ID=Phyra78018;Parent=Phyra78018;rank=1 scaffold_28 . exon 231717 232943 . - . ID=Phyra78018.1;Parent=Phyra78018;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 233458 234726 . - . ID=Phyra78019;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000067;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 233458 234726 . - . ID=Phyra78019;Parent=Phyra78019;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 233458 234726 . - 0 ID=Phyra78019;Parent=Phyra78019;rank=1 scaffold_28 . exon 233458 234726 . - . ID=Phyra78019.1;Parent=Phyra78019;constitutive=1;rank=1 scaffold_28 . biological_region 237036 237038 0.999 - . logic_name=eponine scaffold_28 . biological_region 237439 237442 0.999 - . logic_name=eponine scaffold_28 . biological_region 240082 240083 0.999 - . logic_name=eponine scaffold_28 . biological_region 241291 241296 0.999 + . logic_name=eponine scaffold_28 . biological_region 243465 243466 0.999 - . logic_name=eponine scaffold_28 . biological_region 245130 245130 0.999 + . logic_name=eponine scaffold_28 ensembl protein_coding_gene 243467 245603 . + . ID=Phyra46295;biotype=protein_coding;external_name=gwEuk.28.12.1;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 243467 245603 . + . ID=Phyra46295;Parent=Phyra46295;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 243467 243837 . + 0 ID=Phyra46295;Parent=Phyra46295;rank=1 scaffold_28 . exon 243467 243837 . + . ID=Phyra46295.1;Parent=Phyra46295;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . CDS 243899 245603 . + 0 ID=Phyra46295;Parent=Phyra46295;rank=2 scaffold_28 . exon 243899 245603 . + . ID=Phyra46295.2;Parent=Phyra46295;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 ensembl protein_coding_gene 235878 237995 . + . ID=Phyra78020;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000068;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 235878 237995 . + . ID=Phyra78020;Parent=Phyra78020;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 235878 237995 . + 0 ID=Phyra78020;Parent=Phyra78020;rank=1 scaffold_28 . exon 235878 237995 . + . ID=Phyra78020.1;Parent=Phyra78020;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 238123 239553 . - . ID=Phyra78021;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000069;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 238123 239553 . - . ID=Phyra78021;Parent=Phyra78021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 238123 239553 . - 0 ID=Phyra78021;Parent=Phyra78021;rank=1 scaffold_28 . exon 238123 239553 . - . ID=Phyra78021.1;Parent=Phyra78021;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 240022 241200 . - . ID=Phyra78022;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000070;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 240022 241200 . - . ID=Phyra78022;Parent=Phyra78022;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 240022 241200 . - 0 ID=Phyra78022;Parent=Phyra78022;rank=1 scaffold_28 . exon 240022 241200 . - . ID=Phyra78022.1;Parent=Phyra78022;constitutive=1;rank=1 scaffold_28 . repeat_region 246162 246188 . ? . description=trf scaffold_28 . repeat_region 246978 246986 . ? . description=dust scaffold_28 . repeat_region 248528 248547 . ? . description=trf scaffold_28 . repeat_region 248953 248964 . ? . description=dust scaffold_28 . repeat_region 254379 254446 . ? . description=dust scaffold_28 ensembl protein_coding_gene 250460 251668 . - . ID=Phyra46300;biotype=protein_coding;external_name=gwEuk.28.17.1;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 250460 251668 . - . ID=Phyra46300;Parent=Phyra46300;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 250460 251668 . - 0 ID=Phyra46300;Parent=Phyra46300;rank=1 scaffold_28 . exon 250460 251668 . - . ID=Phyra46300.1;Parent=Phyra46300;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 248335 248841 . - . ID=Phyra78024;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000072;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 248335 248841 . - . ID=Phyra78024;Parent=Phyra78024;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 248335 248841 . - 0 ID=Phyra78024;Parent=Phyra78024;rank=1 scaffold_28 . exon 248335 248841 . - . ID=Phyra78024.1;Parent=Phyra78024;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 252143 254902 . - . ID=Phyra78026;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000074;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 252143 254902 . - . ID=Phyra78026;Parent=Phyra78026;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 252143 254301 . - 0 ID=Phyra78026;Parent=Phyra78026;rank=2 scaffold_28 . exon 252143 254301 . - . ID=Phyra78026.2;Parent=Phyra78026;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 254482 254902 . - 0 ID=Phyra78026;Parent=Phyra78026;rank=1 scaffold_28 . exon 254482 254902 . - . ID=Phyra78026.1;Parent=Phyra78026;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . biological_region 256429 256431 0.999 + . logic_name=eponine scaffold_28 . biological_region 256895 256900 0.999 + . logic_name=eponine scaffold_28 . biological_region 257518 257525 0.999 + . logic_name=eponine scaffold_28 . biological_region 257557 257558 0.999 + . logic_name=eponine scaffold_28 . biological_region 257594 257596 0.999 - . logic_name=eponine scaffold_28 . biological_region 257600 257603 0.999 - . logic_name=eponine scaffold_28 . biological_region 257617 257627 0.999 - . logic_name=eponine scaffold_28 . biological_region 257634 257635 0.999 - . logic_name=eponine scaffold_28 . biological_region 257661 257670 0.999 - . logic_name=eponine scaffold_28 . biological_region 257700 257705 0.999 - . logic_name=eponine scaffold_28 . biological_region 257723 257725 0.999 - . logic_name=eponine scaffold_28 . biological_region 257765 257767 0.999 - . logic_name=eponine scaffold_28 . biological_region 257924 257927 0.999 - . logic_name=eponine scaffold_28 . biological_region 261808 261810 0.999 - . logic_name=eponine scaffold_28 . biological_region 261826 261830 0.999 + . logic_name=eponine scaffold_28 . biological_region 263340 263343 0.999 + . logic_name=eponine scaffold_28 ensembl protein_coding_gene 257528 261361 . + . ID=Phyra78027;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000075;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 257528 261361 . + . ID=Phyra78027;Parent=Phyra78027;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 257528 261361 . + 0 ID=Phyra78027;Parent=Phyra78027;rank=1 scaffold_28 . exon 257528 261361 . + . ID=Phyra78027.1;Parent=Phyra78027;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 262482 263456 . - . ID=Phyra78028;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000076;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 262482 263456 . - . ID=Phyra78028;Parent=Phyra78028;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 262482 263456 . - 0 ID=Phyra78028;Parent=Phyra78028;rank=1 scaffold_28 . exon 262482 263456 . - . ID=Phyra78028.1;Parent=Phyra78028;constitutive=1;rank=1 scaffold_28 . repeat_region 274074 274123 . ? . description=dust scaffold_28 ensembl protein_coding_gene 266086 266942 . - . ID=Phyra78029;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000077;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 266086 266942 . - . ID=Phyra78029;Parent=Phyra78029;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 266086 266351 . - 0 ID=Phyra78029;Parent=Phyra78029;rank=2 scaffold_28 . exon 266086 266351 . - . ID=Phyra78029.2;Parent=Phyra78029;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 266426 266942 . - 0 ID=Phyra78029;Parent=Phyra78029;rank=1 scaffold_28 . exon 266426 266942 . - . ID=Phyra78029.1;Parent=Phyra78029;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 ensembl protein_coding_gene 267381 268469 . - . ID=Phyra78030;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000078;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 267381 268469 . - . ID=Phyra78030;Parent=Phyra78030;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 267381 268469 . - 0 ID=Phyra78030;Parent=Phyra78030;rank=1 scaffold_28 . exon 267381 268469 . - . ID=Phyra78030.1;Parent=Phyra78030;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 269765 271217 . + . ID=Phyra78031;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000079;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 269765 271217 . + . ID=Phyra78031;Parent=Phyra78031;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 269765 269972 . + 0 ID=Phyra78031;Parent=Phyra78031;rank=1 scaffold_28 . exon 269765 269972 . + . ID=Phyra78031.1;Parent=Phyra78031;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 270046 270710 . + 0 ID=Phyra78031;Parent=Phyra78031;rank=2 scaffold_28 . exon 270046 270710 . + . ID=Phyra78031.2;Parent=Phyra78031;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 270774 271217 . + 0 ID=Phyra78031;Parent=Phyra78031;rank=3 scaffold_28 . exon 270774 271217 . + . ID=Phyra78031.3;Parent=Phyra78031;constitutive=1;rank=3 scaffold_28 ensembl protein_coding_gene 271512 272162 . + . ID=Phyra78032;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000080;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 271512 272162 . + . ID=Phyra78032;Parent=Phyra78032;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 271512 272162 . + 0 ID=Phyra78032;Parent=Phyra78032;rank=1 scaffold_28 . exon 271512 272162 . + . ID=Phyra78032.1;Parent=Phyra78032;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 273146 275721 . + . ID=Phyra78033;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000081;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 273146 275721 . + . ID=Phyra78033;Parent=Phyra78033;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 273146 274018 . + 0 ID=Phyra78033;Parent=Phyra78033;rank=1 scaffold_28 . exon 273146 274018 . + . ID=Phyra78033.1;Parent=Phyra78033;constitutive=1;rank=1 scaffold_28 . CDS 274176 275628 . + 0 ID=Phyra78033;Parent=Phyra78033;rank=2 scaffold_28 . exon 274176 275628 . + . ID=Phyra78033.2;Parent=Phyra78033;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_28 . CDS 275711 275721 . + 0 ID=Phyra78033;Parent=Phyra78033;rank=3 scaffold_28 . biological_region 276528 276530 0.999 + . logic_name=eponine scaffold_28 . biological_region 276722 276722 0.999 - . logic_name=eponine scaffold_28 . repeat_region 284427 284466 . ? . description=trf scaffold_28 . exon 275711 275721 . + . ID=Phyra78033.3;Parent=Phyra78033;constitutive=1;ensembl_phase=1;rank=3 scaffold_28 ensembl protein_coding_gene 276418 278122 . - . ID=Phyra78034;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000082;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 276418 278122 . - . ID=Phyra78034;Parent=Phyra78034;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 276418 277299 . - 0 ID=Phyra78034;Parent=Phyra78034;rank=4 scaffold_28 . exon 276418 277299 . - . ID=Phyra78034.4;Parent=Phyra78034;constitutive=1;rank=4 scaffold_28 . CDS 277362 277430 . - 0 ID=Phyra78034;Parent=Phyra78034;rank=3 scaffold_28 . exon 277362 277430 . - . ID=Phyra78034.3;Parent=Phyra78034;constitutive=1;rank=3 scaffold_28 . CDS 277494 277780 . - 0 ID=Phyra78034;Parent=Phyra78034;rank=2 scaffold_28 . exon 277494 277780 . - . ID=Phyra78034.2;Parent=Phyra78034;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 277831 278122 . - 0 ID=Phyra78034;Parent=Phyra78034;rank=1 scaffold_28 . exon 277831 278122 . - . ID=Phyra78034.1;Parent=Phyra78034;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 ensembl protein_coding_gene 279662 280312 . + . ID=Phyra78035;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000083;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 279662 280312 . + . ID=Phyra78035;Parent=Phyra78035;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 279662 280312 . + 0 ID=Phyra78035;Parent=Phyra78035;rank=1 scaffold_28 . exon 279662 280312 . + . ID=Phyra78035.1;Parent=Phyra78035;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 281296 286977 . + . ID=Phyra78036;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000084;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 281296 286977 . + . ID=Phyra78036;Parent=Phyra78036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 281296 284031 . + 0 ID=Phyra78036;Parent=Phyra78036;rank=1 scaffold_28 . exon 281296 284031 . + . ID=Phyra78036.1;Parent=Phyra78036;constitutive=1;rank=1 scaffold_28 . CDS 284277 286884 . + 0 ID=Phyra78036;Parent=Phyra78036;rank=2 scaffold_28 . exon 284277 286884 . + . ID=Phyra78036.2;Parent=Phyra78036;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_28 . CDS 286967 286977 . + 0 ID=Phyra78036;Parent=Phyra78036;rank=3 scaffold_28 . repeat_region 294303 294310 . ? . description=dust scaffold_28 . exon 286967 286977 . + . ID=Phyra78036.3;Parent=Phyra78036;constitutive=1;ensembl_phase=1;rank=3 scaffold_28 ensembl protein_coding_gene 287674 289378 . - . ID=Phyra78037;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000085;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 287674 289378 . - . ID=Phyra78037;Parent=Phyra78037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 287674 288555 . - 0 ID=Phyra78037;Parent=Phyra78037;rank=4 scaffold_28 . exon 287674 288555 . - . ID=Phyra78037.4;Parent=Phyra78037;constitutive=1;rank=4 scaffold_28 . CDS 288618 288686 . - 0 ID=Phyra78037;Parent=Phyra78037;rank=3 scaffold_28 . exon 288618 288686 . - . ID=Phyra78037.3;Parent=Phyra78037;constitutive=1;rank=3 scaffold_28 . CDS 288750 289036 . - 0 ID=Phyra78037;Parent=Phyra78037;rank=2 scaffold_28 . exon 288750 289036 . - . ID=Phyra78037.2;Parent=Phyra78037;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 289087 289378 . - 0 ID=Phyra78037;Parent=Phyra78037;rank=1 scaffold_28 . exon 289087 289378 . - . ID=Phyra78037.1;Parent=Phyra78037;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . biological_region 298618 298624 0.999 - . logic_name=eponine scaffold_28 . biological_region 301628 301630 0.999 - . logic_name=eponine scaffold_28 . biological_region 301703 301703 0.999 + . logic_name=eponine scaffold_28 ensembl protein_coding_gene 299427 299861 . + . ID=Phyra71579;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_28000007;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 299427 299861 . + . ID=Phyra71579;Parent=Phyra71579;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 299427 299861 . + 0 ID=Phyra71579;Parent=Phyra71579;rank=1 scaffold_28 . exon 299427 299861 . + . ID=Phyra71579.1;Parent=Phyra71579;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 297806 299089 . + . ID=Phyra78038;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000086;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 297806 299089 . + . ID=Phyra78038;Parent=Phyra78038;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 297806 299089 . + 0 ID=Phyra78038;Parent=Phyra78038;rank=1 scaffold_28 . exon 297806 299089 . + . ID=Phyra78038.1;Parent=Phyra78038;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 300315 302530 . - . ID=Phyra78040;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000088;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 300315 302530 . - . ID=Phyra78040;Parent=Phyra78040;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 300315 302459 . - 0 ID=Phyra78040;Parent=Phyra78040;rank=2 scaffold_28 . exon 300315 302459 . - . ID=Phyra78040.2;Parent=Phyra78040;constitutive=1;rank=2 scaffold_28 . CDS 302528 302530 . - 0 ID=Phyra78040;Parent=Phyra78040;rank=1 scaffold_28 . exon 302528 302530 . - . ID=Phyra78040.1;Parent=Phyra78040;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 303768 304836 . - . ID=Phyra78041;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000089;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 303768 304836 . - . ID=Phyra78041;Parent=Phyra78041;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 303768 304364 . - 0 ID=Phyra78041;Parent=Phyra78041;rank=3 scaffold_28 . exon 303768 304364 . - . ID=Phyra78041.3;Parent=Phyra78041;constitutive=1;rank=3 scaffold_28 . CDS 304445 304580 . - 0 ID=Phyra78041;Parent=Phyra78041;rank=2 scaffold_28 . exon 304445 304580 . - . ID=Phyra78041.2;Parent=Phyra78041;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 304661 304836 . - 0 ID=Phyra78041;Parent=Phyra78041;rank=1 scaffold_28 . repeat_region 313074 313085 . ? . description=dust scaffold_28 ensembl protein_coding_gene 305020 306147 . + . ID=Phyra71580;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_28000008;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 305020 306147 . + . ID=Phyra71580;Parent=Phyra71580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 305020 306147 . + 0 ID=Phyra71580;Parent=Phyra71580;rank=1 scaffold_28 . exon 305020 306147 . + . ID=Phyra71580.1;Parent=Phyra71580;constitutive=1;rank=1 scaffold_28 . exon 304661 304836 . - . ID=Phyra78041.1;Parent=Phyra78041;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 ensembl protein_coding_gene 306295 307762 . - . ID=Phyra78043;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000091;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 306295 307762 . - . ID=Phyra78043;Parent=Phyra78043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 306295 306735 . - 0 ID=Phyra78043;Parent=Phyra78043;rank=3 scaffold_28 . exon 306295 306735 . - . ID=Phyra78043.3;Parent=Phyra78043;constitutive=1;rank=3 scaffold_28 . CDS 306798 307477 . - 0 ID=Phyra78043;Parent=Phyra78043;rank=2 scaffold_28 . exon 306798 307477 . - . ID=Phyra78043.2;Parent=Phyra78043;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 307543 307762 . - 0 ID=Phyra78043;Parent=Phyra78043;rank=1 scaffold_28 . exon 307543 307762 . - . ID=Phyra78043.1;Parent=Phyra78043;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 ensembl protein_coding_gene 309022 310501 . + . ID=Phyra78044;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000092;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 309022 310501 . + . ID=Phyra78044;Parent=Phyra78044;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 309022 309363 . + 0 ID=Phyra78044;Parent=Phyra78044;rank=1 scaffold_28 . exon 309022 309363 . + . ID=Phyra78044.1;Parent=Phyra78044;constitutive=1;rank=1 scaffold_28 . CDS 309446 309786 . + 0 ID=Phyra78044;Parent=Phyra78044;rank=2 scaffold_28 . exon 309446 309786 . + . ID=Phyra78044.2;Parent=Phyra78044;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_28 . CDS 309915 309970 . + 0 ID=Phyra78044;Parent=Phyra78044;rank=3 scaffold_28 . exon 309915 309970 . + . ID=Phyra78044.3;Parent=Phyra78044;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_28 . CDS 310038 310152 . + 0 ID=Phyra78044;Parent=Phyra78044;rank=4 scaffold_28 . exon 310038 310152 . + . ID=Phyra78044.4;Parent=Phyra78044;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_28 . CDS 310267 310501 . + 0 ID=Phyra78044;Parent=Phyra78044;rank=5 scaffold_28 . exon 310267 310501 . + . ID=Phyra78044.5;Parent=Phyra78044;constitutive=1;ensembl_phase=2;rank=5 scaffold_28 ensembl protein_coding_gene 310683 312455 . - . ID=Phyra78045;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000093;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 310683 312455 . - . ID=Phyra78045;Parent=Phyra78045;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 310683 312455 . - 0 ID=Phyra78045;Parent=Phyra78045;rank=1 scaffold_28 . exon 310683 312455 . - . ID=Phyra78045.1;Parent=Phyra78045;constitutive=1;rank=1 scaffold_28 . biological_region 321337 321340 0.999 - . logic_name=eponine scaffold_28 . biological_region 321391 321397 0.999 + . logic_name=eponine scaffold_28 . biological_region 321414 321414 0.999 + . logic_name=eponine scaffold_28 ensembl protein_coding_gene 315919 316903 . + . ID=Phyra78046;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000094;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 315919 316903 . + . ID=Phyra78046;Parent=Phyra78046;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 315919 316311 . + 0 ID=Phyra78046;Parent=Phyra78046;rank=1 scaffold_28 . exon 315919 316311 . + . ID=Phyra78046.1;Parent=Phyra78046;constitutive=1;rank=1 scaffold_28 . CDS 316484 316903 . + 0 ID=Phyra78046;Parent=Phyra78046;rank=2 scaffold_28 . exon 316484 316903 . + . ID=Phyra78046.2;Parent=Phyra78046;constitutive=1;rank=2 scaffold_28 ensembl protein_coding_gene 318988 320997 . + . ID=Phyra78047;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000095;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 318988 320997 . + . ID=Phyra78047;Parent=Phyra78047;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 318988 319584 . + 0 ID=Phyra78047;Parent=Phyra78047;rank=1 scaffold_28 . exon 318988 319584 . + . ID=Phyra78047.1;Parent=Phyra78047;constitutive=1;rank=1 scaffold_28 . CDS 319679 320665 . + 0 ID=Phyra78047;Parent=Phyra78047;rank=2 scaffold_28 . exon 319679 320665 . + . ID=Phyra78047.2;Parent=Phyra78047;constitutive=1;rank=2 scaffold_28 . CDS 320701 320997 . + 0 ID=Phyra78047;Parent=Phyra78047;rank=3 scaffold_28 . exon 320701 320997 . + . ID=Phyra78047.3;Parent=Phyra78047;constitutive=1;rank=3 scaffold_28 ensembl protein_coding_gene 323501 325332 . + . ID=Phyra78048;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000096;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 323501 325332 . + . ID=Phyra78048;Parent=Phyra78048;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 323501 323530 . + 0 ID=Phyra78048;Parent=Phyra78048;rank=1 scaffold_28 . exon 323501 323530 . + . ID=Phyra78048.1;Parent=Phyra78048;constitutive=1;rank=1 scaffold_28 . CDS 323961 324065 . + 0 ID=Phyra78048;Parent=Phyra78048;rank=2 scaffold_28 . exon 323961 324065 . + . ID=Phyra78048.2;Parent=Phyra78048;constitutive=1;rank=2 scaffold_28 . CDS 324162 324737 . + 0 ID=Phyra78048;Parent=Phyra78048;rank=3 scaffold_28 . CDS 324766 325332 . + 0 ID=Phyra78048;Parent=Phyra78048;rank=4 scaffold_28 . repeat_region 331391 331418 . ? . description=trf scaffold_28 . repeat_region 331391 331418 . ? . description=dust scaffold_28 . repeat_region 331917 332028 . ? . description=trf scaffold_28 . repeat_region 333865 333872 . ? . description=dust scaffold_28 . exon 324162 324737 . + . ID=Phyra78048.3;Parent=Phyra78048;constitutive=1;rank=3 scaffold_28 . exon 324766 325332 . + . ID=Phyra78048.4;Parent=Phyra78048;constitutive=1;rank=4 scaffold_28 . biological_region 335295 335298 0.999 - . logic_name=eponine scaffold_28 ensembl protein_coding_gene 341774 343545 . + . ID=Phyra46323;biotype=protein_coding;external_name=gwEuk.28.40.1;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 341774 343545 . + . ID=Phyra46323;Parent=Phyra46323;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 341774 341900 . + 0 ID=Phyra46323;Parent=Phyra46323;rank=1 scaffold_28 . exon 341774 341900 . + . ID=Phyra46323.1;Parent=Phyra46323;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 341970 342039 . + 0 ID=Phyra46323;Parent=Phyra46323;rank=2 scaffold_28 . exon 341970 342039 . + . ID=Phyra46323.2;Parent=Phyra46323;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_28 . CDS 342104 342365 . + 0 ID=Phyra46323;Parent=Phyra46323;rank=3 scaffold_28 . exon 342104 342365 . + . ID=Phyra46323.3;Parent=Phyra46323;constitutive=1;ensembl_phase=2;rank=3 scaffold_28 . CDS 342434 342547 . + 0 ID=Phyra46323;Parent=Phyra46323;rank=4 scaffold_28 . exon 342434 342547 . + . ID=Phyra46323.4;Parent=Phyra46323;constitutive=1;rank=4 scaffold_28 . CDS 342607 342663 . + 0 ID=Phyra46323;Parent=Phyra46323;rank=5 scaffold_28 . exon 342607 342663 . + . ID=Phyra46323.5;Parent=Phyra46323;constitutive=1;rank=5 scaffold_28 . CDS 342723 342953 . + 0 ID=Phyra46323;Parent=Phyra46323;rank=6 scaffold_28 . exon 342723 342953 . + . ID=Phyra46323.6;Parent=Phyra46323;constitutive=1;rank=6 scaffold_28 . CDS 343018 343194 . + 0 ID=Phyra46323;Parent=Phyra46323;rank=7 scaffold_28 . exon 343018 343194 . + . ID=Phyra46323.7;Parent=Phyra46323;constitutive=1;rank=7 scaffold_28 . CDS 343262 343360 . + 0 ID=Phyra46323;Parent=Phyra46323;rank=8 scaffold_28 . exon 343262 343360 . + . ID=Phyra46323.8;Parent=Phyra46323;constitutive=1;rank=8 scaffold_28 . CDS 343447 343545 . + 0 ID=Phyra46323;Parent=Phyra46323;rank=9 scaffold_28 . exon 343447 343545 . + . ID=Phyra46323.9;Parent=Phyra46323;constitutive=1;rank=9 scaffold_28 ensembl protein_coding_gene 335104 336951 . + . ID=Phyra78049;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000097;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 335104 336951 . + . ID=Phyra78049;Parent=Phyra78049;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 335104 336951 . + 0 ID=Phyra78049;Parent=Phyra78049;rank=1 scaffold_28 . exon 335104 336951 . + . ID=Phyra78049.1;Parent=Phyra78049;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 340434 341384 . + . ID=Phyra78050;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000098;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 340434 341384 . + . ID=Phyra78050;Parent=Phyra78050;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 340434 341087 . + 0 ID=Phyra78050;Parent=Phyra78050;rank=1 scaffold_28 . exon 340434 341087 . + . ID=Phyra78050.1;Parent=Phyra78050;constitutive=1;rank=1 scaffold_28 . CDS 341139 341384 . + 0 ID=Phyra78050;Parent=Phyra78050;rank=2 scaffold_28 . exon 341139 341384 . + . ID=Phyra78050.2;Parent=Phyra78050;constitutive=1;rank=2 scaffold_28 . repeat_region 352169 352263 . ? . description=trf scaffold_28 ensembl protein_coding_gene 344042 345273 . - . ID=Phyra78052;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000100;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 344042 345273 . - . ID=Phyra78052;Parent=Phyra78052;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 344042 344497 . - 0 ID=Phyra78052;Parent=Phyra78052;rank=3 scaffold_28 . exon 344042 344497 . - . ID=Phyra78052.3;Parent=Phyra78052;constitutive=1;rank=3 scaffold_28 . CDS 344575 344712 . - 0 ID=Phyra78052;Parent=Phyra78052;rank=2 scaffold_28 . exon 344575 344712 . - . ID=Phyra78052.2;Parent=Phyra78052;constitutive=1;rank=2 scaffold_28 . CDS 344818 345273 . - 0 ID=Phyra78052;Parent=Phyra78052;rank=1 scaffold_28 . exon 344818 345273 . - . ID=Phyra78052.1;Parent=Phyra78052;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 348076 349698 . - . ID=Phyra78053;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000101;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 348076 349698 . - . ID=Phyra78053;Parent=Phyra78053;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 348076 349698 . - 0 ID=Phyra78053;Parent=Phyra78053;rank=1 scaffold_28 . exon 348076 349698 . - . ID=Phyra78053.1;Parent=Phyra78053;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 351676 352365 . - . ID=Phyra78054;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000102;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 351676 352365 . - . ID=Phyra78054;Parent=Phyra78054;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 351676 352365 . - 0 ID=Phyra78054;Parent=Phyra78054;rank=1 scaffold_28 . exon 351676 352365 . - . ID=Phyra78054.1;Parent=Phyra78054;constitutive=1;rank=1 scaffold_28 . biological_region 354421 354425 0.999 - . logic_name=eponine scaffold_28 . repeat_region 355212 355261 . ? . description=dust scaffold_28 . repeat_region 355480 355488 . ? . description=dust scaffold_28 . repeat_region 359440 359447 . ? . description=dust scaffold_28 . repeat_region 359769 359782 . ? . description=dust scaffold_28 ensembl tRNA_gene 357169 357246 . - . ID=EPrPRAG00000000199;biotype=tRNA;description=tRNA-Leu for anticodon AAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_28 ensembl transcript 357169 357246 . - . ID=EPrPRAT00000000199;Parent=EPrPRAG00000000199;biotype=tRNA;logic_name=ncrna_eg scaffold_28 . exon 357169 357246 . - . ID=EPrPRAE00000000199;Parent=EPrPRAT00000000199;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 355571 356701 . + . ID=Phyra71581;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_28000009;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 355571 356701 . + . ID=Phyra71581;Parent=Phyra71581;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 355571 356701 . + 0 ID=Phyra71581;Parent=Phyra71581;rank=1 scaffold_28 . exon 355571 356701 . + . ID=Phyra71581.1;Parent=Phyra71581;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 357472 359055 . + . ID=Phyra78056;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000104;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 357472 359055 . + . ID=Phyra78056;Parent=Phyra78056;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 357472 359055 . + 0 ID=Phyra78056;Parent=Phyra78056;rank=1 scaffold_28 . exon 357472 359055 . + . ID=Phyra78056.1;Parent=Phyra78056;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 361659 363113 . + . ID=Phyra78057;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000105;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 361659 363113 . + . ID=Phyra78057;Parent=Phyra78057;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 361659 361673 . + 0 ID=Phyra78057;Parent=Phyra78057;rank=1 scaffold_28 . exon 361659 361673 . + . ID=Phyra78057.1;Parent=Phyra78057;constitutive=1;rank=1 scaffold_28 . CDS 361757 362062 . + 0 ID=Phyra78057;Parent=Phyra78057;rank=2 scaffold_28 . exon 361757 362062 . + . ID=Phyra78057.2;Parent=Phyra78057;constitutive=1;rank=2 scaffold_28 . CDS 362088 363113 . + 0 ID=Phyra78057;Parent=Phyra78057;rank=3 scaffold_28 . exon 362088 363113 . + . ID=Phyra78057.3;Parent=Phyra78057;constitutive=1;rank=3 scaffold_28 . repeat_region 364788 364893 . ? . description=trf scaffold_28 . repeat_region 366443 366466 . ? . description=trf scaffold_28 ensembl protein_coding_gene 369127 371820 . + . ID=Phyra78058;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000106;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 369127 371820 . + . ID=Phyra78058;Parent=Phyra78058;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 369127 371152 . + 0 ID=Phyra78058;Parent=Phyra78058;rank=1 scaffold_28 . exon 369127 371152 . + . ID=Phyra78058.1;Parent=Phyra78058;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 371207 371820 . + 0 ID=Phyra78058;Parent=Phyra78058;rank=2 scaffold_28 . exon 371207 371820 . + . ID=Phyra78058.2;Parent=Phyra78058;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . repeat_region 379582 379605 . ? . description=dust scaffold_28 . biological_region 380440 380440 0.999 - . logic_name=eponine scaffold_28 . repeat_region 382364 382373 . ? . description=dust scaffold_28 . repeat_region 382448 382457 . ? . description=dust scaffold_28 ensembl protein_coding_gene 373323 374241 . + . ID=Phyra78059;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000107;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 373323 374241 . + . ID=Phyra78059;Parent=Phyra78059;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 373323 373325 . + 0 ID=Phyra78059;Parent=Phyra78059;rank=1 scaffold_28 . exon 373323 373325 . + . ID=Phyra78059.1;Parent=Phyra78059;constitutive=1;rank=1 scaffold_28 . CDS 373399 374241 . + 0 ID=Phyra78059;Parent=Phyra78059;rank=2 scaffold_28 . exon 373399 374241 . + . ID=Phyra78059.2;Parent=Phyra78059;constitutive=1;rank=2 scaffold_28 . repeat_region 396662 396677 . ? . description=dust scaffold_28 . biological_region 397580 397581 0.999 + . logic_name=eponine scaffold_28 . biological_region 397772 397774 0.999 + . logic_name=eponine scaffold_28 . biological_region 398065 398066 0.999 + . logic_name=eponine scaffold_28 . biological_region 398142 398143 0.999 - . logic_name=eponine scaffold_28 . biological_region 398159 398160 0.999 - . logic_name=eponine scaffold_28 . biological_region 398175 398181 0.999 - . logic_name=eponine scaffold_28 . biological_region 398731 398733 0.999 - . logic_name=eponine scaffold_28 . repeat_region 399592 399633 . ? . description=dust scaffold_28 . repeat_region 399593 399630 . ? . description=trf scaffold_28 ensembl protein_coding_gene 399158 399787 . - . ID=Phyra78060;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000108;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 399158 399787 . - . ID=Phyra78060;Parent=Phyra78060;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 399158 399787 . - 0 ID=Phyra78060;Parent=Phyra78060;rank=1 scaffold_28 . exon 399158 399787 . - . ID=Phyra78060.1;Parent=Phyra78060;constitutive=1;rank=1 scaffold_28 . repeat_region 408771 413130 . ? . description=dust scaffold_28 . biological_region 413627 413633 0.999 - . logic_name=eponine scaffold_28 . repeat_region 413742 413829 . ? . description=trf scaffold_28 . biological_region 416147 416150 0.999 + . logic_name=eponine scaffold_28 . biological_region 417084 417088 0.999 - . logic_name=eponine scaffold_28 . biological_region 417177 417180 0.999 + . logic_name=eponine scaffold_28 . biological_region 417600 417605 0.999 - . logic_name=eponine scaffold_28 . repeat_region 420149 420693 . ? . description=dust scaffold_28 ensembl protein_coding_gene 416110 417655 . - . ID=Phyra78061;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000109;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 416110 417655 . - . ID=Phyra78061;Parent=Phyra78061;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 416110 416453 . - 0 ID=Phyra78061;Parent=Phyra78061;rank=5 scaffold_28 . exon 416110 416453 . - . ID=Phyra78061.5;Parent=Phyra78061;constitutive=1;ensembl_phase=1;rank=5 scaffold_28 . CDS 416490 416605 . - 0 ID=Phyra78061;Parent=Phyra78061;rank=4 scaffold_28 . exon 416490 416605 . - . ID=Phyra78061.4;Parent=Phyra78061;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_28 . CDS 416652 416679 . - 0 ID=Phyra78061;Parent=Phyra78061;rank=3 scaffold_28 . exon 416652 416679 . - . ID=Phyra78061.3;Parent=Phyra78061;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_28 . CDS 416704 416721 . - 0 ID=Phyra78061;Parent=Phyra78061;rank=2 scaffold_28 . exon 416704 416721 . - . ID=Phyra78061.2;Parent=Phyra78061;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 416776 417655 . - 0 ID=Phyra78061;Parent=Phyra78061;rank=1 scaffold_28 . exon 416776 417655 . - . ID=Phyra78061.1;Parent=Phyra78061;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . repeat_region 422833 432868 . ? . description=dust scaffold_28 . biological_region 434476 434480 0.999 + . logic_name=eponine scaffold_28 . biological_region 440512 440522 0.999 - . logic_name=eponine scaffold_28 ensembl protein_coding_gene 438884 440512 . - . ID=Phyra78062;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000110;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 438884 440512 . - . ID=Phyra78062;Parent=Phyra78062;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 438884 440512 . - 0 ID=Phyra78062;Parent=Phyra78062;rank=1 scaffold_28 . exon 438884 440512 . - . ID=Phyra78062.1;Parent=Phyra78062;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 441213 442934 . - . ID=Phyra78063;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000111;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 441213 442934 . - . ID=Phyra78063;Parent=Phyra78063;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 441213 442934 . - 0 ID=Phyra78063;Parent=Phyra78063;rank=1 scaffold_28 . exon 441213 442934 . - . ID=Phyra78063.1;Parent=Phyra78063;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 450889 451769 . - . ID=Phyra78066;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000114;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 450889 451769 . - . ID=Phyra78066;Parent=Phyra78066;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 450889 450899 . - 0 ID=Phyra78066;Parent=Phyra78066;rank=4 scaffold_28 . exon 450889 450899 . - . ID=Phyra78066.4;Parent=Phyra78066;constitutive=1;ensembl_phase=1;rank=4 scaffold_28 . CDS 450937 451065 . - 0 ID=Phyra78066;Parent=Phyra78066;rank=3 scaffold_28 . exon 450937 451065 . - . ID=Phyra78066.3;Parent=Phyra78066;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_28 . CDS 451137 451375 . - 0 ID=Phyra78066;Parent=Phyra78066;rank=2 scaffold_28 . exon 451137 451375 . - . ID=Phyra78066.2;Parent=Phyra78066;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 451444 451769 . - 0 ID=Phyra78066;Parent=Phyra78066;rank=1 scaffold_28 . exon 451444 451769 . - . ID=Phyra78066.1;Parent=Phyra78066;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 ensembl protein_coding_gene 445725 449172 . - . ID=Phyra95001;biotype=protein_coding;external_name=C_scaffold_28000014;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 445725 449172 . - . ID=Phyra95001;Parent=Phyra95001;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 445725 446138 . - 0 ID=Phyra95001;Parent=Phyra95001;rank=7 scaffold_28 . exon 445725 446138 . - . ID=Phyra95001.7;Parent=Phyra95001;constitutive=1;rank=7 scaffold_28 . CDS 446166 446820 . - 0 ID=Phyra95001;Parent=Phyra95001;rank=6 scaffold_28 . exon 446166 446820 . - . ID=Phyra95001.6;Parent=Phyra95001;constitutive=1;ensembl_phase=2;rank=6 scaffold_28 . CDS 446854 447348 . - 0 ID=Phyra95001;Parent=Phyra95001;rank=5 scaffold_28 . exon 446854 447348 . - . ID=Phyra95001.5;Parent=Phyra95001;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_28 . CDS 447905 448263 . - 0 ID=Phyra95001;Parent=Phyra95001;rank=4 scaffold_28 . exon 447905 448263 . - . ID=Phyra95001.4;Parent=Phyra95001;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_28 . CDS 448300 448554 . - 0 ID=Phyra95001;Parent=Phyra95001;rank=3 scaffold_28 . exon 448300 448554 . - . ID=Phyra95001.3;Parent=Phyra95001;constitutive=1;rank=3 scaffold_28 . CDS 448582 448888 . - 0 ID=Phyra95001;Parent=Phyra95001;rank=2 scaffold_28 . exon 448582 448888 . - . ID=Phyra95001.2;Parent=Phyra95001;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 448928 449172 . - 0 ID=Phyra95001;Parent=Phyra95001;rank=1 scaffold_28 . exon 448928 449172 . - . ID=Phyra95001.1;Parent=Phyra95001;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 ensembl protein_coding_gene 449779 450097 . + . ID=Phyra95002;biotype=protein_coding;external_name=C_scaffold_28000015;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 449779 450097 . + . ID=Phyra95002;Parent=Phyra95002;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 449779 449816 . + 0 ID=Phyra95002;Parent=Phyra95002;rank=1 scaffold_28 . exon 449779 449816 . + . ID=Phyra95002.1;Parent=Phyra95002;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . CDS 449876 449978 . + 0 ID=Phyra95002;Parent=Phyra95002;rank=2 scaffold_28 . exon 449876 449978 . + . ID=Phyra95002.2;Parent=Phyra95002;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 450047 450097 . + 0 ID=Phyra95002;Parent=Phyra95002;rank=3 scaffold_28 . exon 450047 450097 . + . ID=Phyra95002.3;Parent=Phyra95002;constitutive=1;rank=3 scaffold_28 . biological_region 452168 452171 0.999 + . logic_name=eponine scaffold_28 . biological_region 455970 455976 0.999 + . logic_name=eponine scaffold_28 . biological_region 456118 456119 0.999 - . logic_name=eponine scaffold_28 . biological_region 456123 456126 0.999 + . logic_name=eponine scaffold_28 . biological_region 456148 456153 0.999 + . logic_name=eponine scaffold_28 . biological_region 456170 456174 0.999 + . logic_name=eponine scaffold_28 . biological_region 456211 456214 0.999 - . logic_name=eponine scaffold_28 . biological_region 456259 456260 0.999 - . logic_name=eponine scaffold_28 . biological_region 456536 456536 0.999 + . logic_name=eponine scaffold_28 . biological_region 456625 456629 0.999 - . logic_name=eponine scaffold_28 . repeat_region 457850 457857 . ? . description=dust scaffold_28 ensembl protein_coding_gene 452114 456256 . - . ID=Phyra78067;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000115;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 452114 456256 . - . ID=Phyra78067;Parent=Phyra78067;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 452114 456256 . - 0 ID=Phyra78067;Parent=Phyra78067;rank=1 scaffold_28 . exon 452114 456256 . - . ID=Phyra78067.1;Parent=Phyra78067;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 459537 463943 . - . ID=Phyra95003;biotype=protein_coding;external_name=C_scaffold_28000016;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 459537 463943 . - . ID=Phyra95003;Parent=Phyra95003;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 459537 459942 . - 0 ID=Phyra95003;Parent=Phyra95003;rank=7 scaffold_28 . exon 459537 459942 . - . ID=Phyra95003.7;Parent=Phyra95003;constitutive=1;ensembl_phase=2;rank=7 scaffold_28 . CDS 460102 460331 . - 0 ID=Phyra95003;Parent=Phyra95003;rank=6 scaffold_28 . exon 460102 460331 . - . ID=Phyra95003.6;Parent=Phyra95003;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_28 . CDS 460566 460864 . - 0 ID=Phyra95003;Parent=Phyra95003;rank=5 scaffold_28 . exon 460566 460864 . - . ID=Phyra95003.5;Parent=Phyra95003;constitutive=1;ensembl_phase=1;rank=5 scaffold_28 . CDS 461084 461423 . - 0 ID=Phyra95003;Parent=Phyra95003;rank=4 scaffold_28 . exon 461084 461423 . - . ID=Phyra95003.4;Parent=Phyra95003;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_28 . CDS 461889 461934 . - 0 ID=Phyra95003;Parent=Phyra95003;rank=3 scaffold_28 . CDS 462007 463448 . - 0 ID=Phyra95003;Parent=Phyra95003;rank=2 scaffold_28 . CDS 463482 463943 . - 0 ID=Phyra95003;Parent=Phyra95003;rank=1 scaffold_28 ensembl protein_coding_gene 465277 466545 . + . ID=Phyra78069;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000117;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 465277 466545 . + . ID=Phyra78069;Parent=Phyra78069;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 465277 466545 . + 0 ID=Phyra78069;Parent=Phyra78069;rank=1 scaffold_28 . exon 465277 466545 . + . ID=Phyra78069.1;Parent=Phyra78069;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 467180 468256 . - . ID=Phyra78070;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000118;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 467180 468256 . - . ID=Phyra78070;Parent=Phyra78070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 467180 468256 . - 0 ID=Phyra78070;Parent=Phyra78070;rank=1 scaffold_28 . exon 467180 468256 . - . ID=Phyra78070.1;Parent=Phyra78070;constitutive=1;rank=1 scaffold_28 . exon 461889 461934 . - . ID=Phyra95003.3;Parent=Phyra95003;constitutive=1;ensembl_phase=2;rank=3 scaffold_28 . exon 462007 463448 . - . ID=Phyra95003.2;Parent=Phyra95003;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_28 . exon 463482 463943 . - . ID=Phyra95003.1;Parent=Phyra95003;constitutive=1;rank=1 scaffold_28 . repeat_region 472359 483084 . ? . description=dust scaffold_28 . biological_region 488679 488680 0.999 - . logic_name=eponine scaffold_28 . repeat_region 496855 496904 . ? . description=dust scaffold_28 . repeat_region 498081 498130 . ? . description=dust scaffold_28 ensembl protein_coding_gene 499709 499971 . + . ID=Phyra46335;biotype=protein_coding;external_name=gwEuk.28.52.1;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 499709 499971 . + . ID=Phyra46335;Parent=Phyra46335;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 499709 499971 . + 0 ID=Phyra46335;Parent=Phyra46335;rank=1 scaffold_28 . exon 499709 499971 . + . ID=Phyra46335.1;Parent=Phyra46335;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 ensembl protein_coding_gene 495226 496827 . + . ID=Phyra78071;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000119;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 495226 496827 . + . ID=Phyra78071;Parent=Phyra78071;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 495226 495253 . + 0 ID=Phyra78071;Parent=Phyra78071;rank=1 scaffold_28 . exon 495226 495253 . + . ID=Phyra78071.1;Parent=Phyra78071;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 495313 495399 . + 0 ID=Phyra78071;Parent=Phyra78071;rank=2 scaffold_28 . exon 495313 495399 . + . ID=Phyra78071.2;Parent=Phyra78071;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 495466 495528 . + 0 ID=Phyra78071;Parent=Phyra78071;rank=3 scaffold_28 . exon 495466 495528 . + . ID=Phyra78071.3;Parent=Phyra78071;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_28 . CDS 495828 495944 . + 0 ID=Phyra78071;Parent=Phyra78071;rank=4 scaffold_28 . exon 495828 495944 . + . ID=Phyra78071.4;Parent=Phyra78071;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_28 . CDS 496020 496585 . + 0 ID=Phyra78071;Parent=Phyra78071;rank=5 scaffold_28 . exon 496020 496585 . + . ID=Phyra78071.5;Parent=Phyra78071;constitutive=1;ensembl_phase=1;rank=5 scaffold_28 . CDS 496819 496827 . + 0 ID=Phyra78071;Parent=Phyra78071;rank=6 scaffold_28 . exon 496819 496827 . + . ID=Phyra78071.6;Parent=Phyra78071;constitutive=1;rank=6 scaffold_28 ensembl protein_coding_gene 498143 498970 . + . ID=Phyra78072;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_28000120;logic_name=jgi_phyra1 scaffold_28 ensembl transcript 498143 498970 . + . ID=Phyra78072;Parent=Phyra78072;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_28 . CDS 498143 498183 . + 0 ID=Phyra78072;Parent=Phyra78072;rank=1 scaffold_28 . exon 498143 498183 . + . ID=Phyra78072.1;Parent=Phyra78072;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . CDS 498259 498970 . + 0 ID=Phyra78072;Parent=Phyra78072;rank=2 scaffold_28 . exon 498259 498970 . + . ID=Phyra78072.2;Parent=Phyra78072;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . repeat_region 502525 527469 . ? . description=dust scaffold_28 . repeat_region 530210 530253 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_26 1 535347 scaffold_26 . repeat_region 888 4723 . ? . description=dust scaffold_26 . repeat_region 4804 4850 . ? . description=trf scaffold_26 . repeat_region 5637 6664 . ? . description=dust scaffold_26 . repeat_region 14677 14919 . - . description=Gypsy-2-I_PI-int scaffold_26 . repeat_region 20080 20087 . ? . description=dust scaffold_26 . repeat_region 20153 20275 . ? . description=trf scaffold_26 . repeat_region 20161 20263 . ? . description=trf scaffold_26 . repeat_region 20180 20209 . ? . description=trf scaffold_26 . repeat_region 25866 25909 . ? . description=trf scaffold_26 . biological_region 28158 28159 0.999 - . logic_name=eponine scaffold_26 . biological_region 28251 28252 0.999 + . logic_name=eponine scaffold_26 . biological_region 29124 29128 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 20593 23224 . + . ID=Phyra77658;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000001;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 20593 23224 . + . ID=Phyra77658;Parent=Phyra77658;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 20593 20684 . + 0 ID=Phyra77658;Parent=Phyra77658;rank=1 scaffold_26 . exon 20593 20684 . + . ID=Phyra77658.1;Parent=Phyra77658;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 20849 21101 . + 0 ID=Phyra77658;Parent=Phyra77658;rank=2 scaffold_26 . exon 20849 21101 . + . ID=Phyra77658.2;Parent=Phyra77658;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 21132 21377 . + 0 ID=Phyra77658;Parent=Phyra77658;rank=3 scaffold_26 . exon 21132 21377 . + . ID=Phyra77658.3;Parent=Phyra77658;constitutive=1;rank=3 scaffold_26 . CDS 22155 22866 . + 0 ID=Phyra77658;Parent=Phyra77658;rank=4 scaffold_26 . exon 22155 22866 . + . ID=Phyra77658.4;Parent=Phyra77658;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_26 . CDS 23154 23224 . + 0 ID=Phyra77658;Parent=Phyra77658;rank=5 scaffold_26 . exon 23154 23224 . + . ID=Phyra77658.5;Parent=Phyra77658;constitutive=1;ensembl_phase=1;rank=5 scaffold_26 ensembl protein_coding_gene 28673 29643 . - . ID=Phyra77660;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000003;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 28673 29643 . - . ID=Phyra77660;Parent=Phyra77660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 28673 29568 . - 0 ID=Phyra77660;Parent=Phyra77660;rank=2 scaffold_26 . exon 28673 29568 . - . ID=Phyra77660.2;Parent=Phyra77660;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 29634 29643 . - 0 ID=Phyra77660;Parent=Phyra77660;rank=1 scaffold_26 . exon 29634 29643 . - . ID=Phyra77660.1;Parent=Phyra77660;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 23951 28345 . - . ID=Phyra94869;biotype=protein_coding;external_name=C_scaffold_26000001;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 23951 28345 . - . ID=Phyra94869;Parent=Phyra94869;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 23951 24407 . - 0 ID=Phyra94869;Parent=Phyra94869;rank=13 scaffold_26 . exon 23951 24407 . - . ID=Phyra94869.13;Parent=Phyra94869;constitutive=1;ensembl_phase=2;rank=13 scaffold_26 . CDS 24576 24735 . - 0 ID=Phyra94869;Parent=Phyra94869;rank=12 scaffold_26 . exon 24576 24735 . - . ID=Phyra94869.12;Parent=Phyra94869;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_26 . CDS 24789 24851 . - 0 ID=Phyra94869;Parent=Phyra94869;rank=11 scaffold_26 . exon 24789 24851 . - . ID=Phyra94869.11;Parent=Phyra94869;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_26 . CDS 24886 24929 . - 0 ID=Phyra94869;Parent=Phyra94869;rank=10 scaffold_26 . exon 24886 24929 . - . ID=Phyra94869.10;Parent=Phyra94869;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_26 . CDS 25347 25547 . - 0 ID=Phyra94869;Parent=Phyra94869;rank=9 scaffold_26 . exon 25347 25547 . - . ID=Phyra94869.9;Parent=Phyra94869;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_26 . CDS 25578 25804 . - 0 ID=Phyra94869;Parent=Phyra94869;rank=8 scaffold_26 . exon 25578 25804 . - . ID=Phyra94869.8;Parent=Phyra94869;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_26 . CDS 25829 26135 . - 0 ID=Phyra94869;Parent=Phyra94869;rank=7 scaffold_26 . exon 25829 26135 . - . ID=Phyra94869.7;Parent=Phyra94869;constitutive=1;ensembl_phase=2;rank=7 scaffold_26 . CDS 26574 26656 . - 0 ID=Phyra94869;Parent=Phyra94869;rank=6 scaffold_26 . exon 26574 26656 . - . ID=Phyra94869.6;Parent=Phyra94869;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_26 . CDS 26726 26816 . - 0 ID=Phyra94869;Parent=Phyra94869;rank=5 scaffold_26 . exon 26726 26816 . - . ID=Phyra94869.5;Parent=Phyra94869;constitutive=1;ensembl_phase=2;rank=5 scaffold_26 . CDS 26893 27608 . - 0 ID=Phyra94869;Parent=Phyra94869;rank=4 scaffold_26 . exon 26893 27608 . - . ID=Phyra94869.4;Parent=Phyra94869;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_26 . CDS 27681 27904 . - 0 ID=Phyra94869;Parent=Phyra94869;rank=3 scaffold_26 . exon 27681 27904 . - . ID=Phyra94869.3;Parent=Phyra94869;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 27982 28141 . - 0 ID=Phyra94869;Parent=Phyra94869;rank=2 scaffold_26 . exon 27982 28141 . - . ID=Phyra94869.2;Parent=Phyra94869;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_26 . CDS 28169 28345 . - 0 ID=Phyra94869;Parent=Phyra94869;rank=1 scaffold_26 . exon 28169 28345 . - . ID=Phyra94869.1;Parent=Phyra94869;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 36444 37712 . + . ID=Phyra45887;biotype=protein_coding;external_name=gwEuk.26.119.1;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 36444 37712 . + . ID=Phyra45887;Parent=Phyra45887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 36444 37712 . + 0 ID=Phyra45887;Parent=Phyra45887;rank=1 scaffold_26 . exon 36444 37712 . + . ID=Phyra45887.1;Parent=Phyra45887;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 31627 32583 . + . ID=Phyra71544;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_26000001;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 31627 32583 . + . ID=Phyra71544;Parent=Phyra71544;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 31627 32583 . + 0 ID=Phyra71544;Parent=Phyra71544;rank=1 scaffold_26 . exon 31627 32583 . + . ID=Phyra71544.1;Parent=Phyra71544;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 29857 31275 . - . ID=Phyra77661;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000004;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 29857 31275 . - . ID=Phyra77661;Parent=Phyra77661;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 29857 31275 . - 0 ID=Phyra77661;Parent=Phyra77661;rank=1 scaffold_26 . exon 29857 31275 . - . ID=Phyra77661.1;Parent=Phyra77661;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 32902 33880 . + . ID=Phyra77663;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000006;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 32902 33880 . + . ID=Phyra77663;Parent=Phyra77663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 32902 32907 . + 0 ID=Phyra77663;Parent=Phyra77663;rank=1 scaffold_26 . exon 32902 32907 . + . ID=Phyra77663.1;Parent=Phyra77663;constitutive=1;rank=1 scaffold_26 . CDS 32976 33675 . + 0 ID=Phyra77663;Parent=Phyra77663;rank=2 scaffold_26 . exon 32976 33675 . + . ID=Phyra77663.2;Parent=Phyra77663;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_26 . CDS 33828 33880 . + 0 ID=Phyra77663;Parent=Phyra77663;rank=3 scaffold_26 . exon 33828 33880 . + . ID=Phyra77663.3;Parent=Phyra77663;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 ensembl protein_coding_gene 34805 36248 . - . ID=Phyra94871;biotype=protein_coding;external_name=C_scaffold_26000003;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 34805 36248 . - . ID=Phyra94871;Parent=Phyra94871;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 34805 35063 . - 0 ID=Phyra94871;Parent=Phyra94871;rank=7 scaffold_26 . exon 34805 35063 . - . ID=Phyra94871.7;Parent=Phyra94871;constitutive=1;ensembl_phase=2;rank=7 scaffold_26 . CDS 35146 35242 . - 0 ID=Phyra94871;Parent=Phyra94871;rank=6 scaffold_26 . exon 35146 35242 . - . ID=Phyra94871.6;Parent=Phyra94871;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_26 . CDS 35327 35538 . - 0 ID=Phyra94871;Parent=Phyra94871;rank=5 scaffold_26 . exon 35327 35538 . - . ID=Phyra94871.5;Parent=Phyra94871;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_26 . CDS 35618 35709 . - 0 ID=Phyra94871;Parent=Phyra94871;rank=4 scaffold_26 . exon 35618 35709 . - . ID=Phyra94871.4;Parent=Phyra94871;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_26 . CDS 35776 35819 . - 0 ID=Phyra94871;Parent=Phyra94871;rank=3 scaffold_26 . exon 35776 35819 . - . ID=Phyra94871.3;Parent=Phyra94871;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 35884 36089 . - 0 ID=Phyra94871;Parent=Phyra94871;rank=2 scaffold_26 . exon 35884 36089 . - . ID=Phyra94871.2;Parent=Phyra94871;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 36156 36247 . - 0 ID=Phyra94871;Parent=Phyra94871;rank=1 scaffold_26 . exon 36156 36248 . - . ID=Phyra94871.1;Parent=Phyra94871;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_26 ensembl protein_coding_gene 38020 40260 . - . ID=Phyra94872;biotype=protein_coding;external_name=C_scaffold_26000004;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 38020 40260 . - . ID=Phyra94872;Parent=Phyra94872;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 38020 39067 . - 0 ID=Phyra94872;Parent=Phyra94872;rank=4 scaffold_26 . exon 38020 39067 . - . ID=Phyra94872.4;Parent=Phyra94872;constitutive=1;ensembl_phase=2;rank=4 scaffold_26 . CDS 39134 39241 . - 0 ID=Phyra94872;Parent=Phyra94872;rank=3 scaffold_26 . exon 39134 39241 . - . ID=Phyra94872.3;Parent=Phyra94872;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_26 . CDS 39305 39619 . - 0 ID=Phyra94872;Parent=Phyra94872;rank=2 scaffold_26 . exon 39305 39619 . - . ID=Phyra94872.2;Parent=Phyra94872;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_26 . CDS 39647 40260 . - 0 ID=Phyra94872;Parent=Phyra94872;rank=1 scaffold_26 . exon 39647 40260 . - . ID=Phyra94872.1;Parent=Phyra94872;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . repeat_region 39433 39687 . ? . description=trf scaffold_26 . repeat_region 39433 39786 . ? . description=trf scaffold_26 . repeat_region 39437 39796 . ? . description=trf scaffold_26 . repeat_region 39441 39783 . ? . description=trf scaffold_26 . biological_region 39742 39746 0.999 + . logic_name=eponine scaffold_26 . biological_region 40867 40870 0.999 - . logic_name=eponine scaffold_26 . biological_region 41137 41139 0.999 - . logic_name=eponine scaffold_26 . biological_region 49033 49039 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 41600 44711 . + . ID=Phyra77667;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000010;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 41600 44711 . + . ID=Phyra77667;Parent=Phyra77667;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 41600 42195 . + 0 ID=Phyra77667;Parent=Phyra77667;rank=1 scaffold_26 . exon 41600 42195 . + . ID=Phyra77667.1;Parent=Phyra77667;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 42403 42490 . + 0 ID=Phyra77667;Parent=Phyra77667;rank=2 scaffold_26 . exon 42403 42490 . + . ID=Phyra77667.2;Parent=Phyra77667;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 42565 42755 . + 0 ID=Phyra77667;Parent=Phyra77667;rank=3 scaffold_26 . exon 42565 42755 . + . ID=Phyra77667.3;Parent=Phyra77667;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_26 . CDS 42819 44070 . + 0 ID=Phyra77667;Parent=Phyra77667;rank=4 scaffold_26 . exon 42819 44070 . + . ID=Phyra77667.4;Parent=Phyra77667;constitutive=1;ensembl_phase=2;rank=4 scaffold_26 . CDS 44140 44232 . + 0 ID=Phyra77667;Parent=Phyra77667;rank=5 scaffold_26 . exon 44140 44232 . + . ID=Phyra77667.5;Parent=Phyra77667;constitutive=1;rank=5 scaffold_26 . CDS 44304 44711 . + 0 ID=Phyra77667;Parent=Phyra77667;rank=6 scaffold_26 . exon 44304 44711 . + . ID=Phyra77667.6;Parent=Phyra77667;constitutive=1;rank=6 scaffold_26 ensembl protein_coding_gene 44772 46251 . - . ID=Phyra77668;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000011;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 44772 46251 . - . ID=Phyra77668;Parent=Phyra77668;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 44772 45251 . - 0 ID=Phyra77668;Parent=Phyra77668;rank=4 scaffold_26 . exon 44772 45251 . - . ID=Phyra77668.4;Parent=Phyra77668;constitutive=1;rank=4 scaffold_26 . CDS 45331 45409 . - 0 ID=Phyra77668;Parent=Phyra77668;rank=3 scaffold_26 . exon 45331 45409 . - . ID=Phyra77668.3;Parent=Phyra77668;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 45473 45597 . - 0 ID=Phyra77668;Parent=Phyra77668;rank=2 scaffold_26 . exon 45473 45597 . - . ID=Phyra77668.2;Parent=Phyra77668;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_26 . CDS 45733 46251 . - 0 ID=Phyra77668;Parent=Phyra77668;rank=1 scaffold_26 . exon 45733 46251 . - . ID=Phyra77668.1;Parent=Phyra77668;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 48930 50666 . + . ID=Phyra77669;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000012;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 48930 50666 . + . ID=Phyra77669;Parent=Phyra77669;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 48930 50666 . + 0 ID=Phyra77669;Parent=Phyra77669;rank=1 scaffold_26 . exon 48930 50666 . + . ID=Phyra77669.1;Parent=Phyra77669;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 51239 53002 . + . ID=Phyra77670;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000013;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 51239 53002 . + . ID=Phyra77670;Parent=Phyra77670;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 51239 53002 . + 0 ID=Phyra77670;Parent=Phyra77670;rank=1 scaffold_26 . exon 51239 53002 . + . ID=Phyra77670.1;Parent=Phyra77670;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 53372 55697 . + . ID=Phyra77671;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000014;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 53372 55697 . + . ID=Phyra77671;Parent=Phyra77671;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 53372 55517 . + 0 ID=Phyra77671;Parent=Phyra77671;rank=1 scaffold_26 . exon 53372 55517 . + . ID=Phyra77671.1;Parent=Phyra77671;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 55690 55697 . + 0 ID=Phyra77671;Parent=Phyra77671;rank=2 scaffold_26 . exon 55690 55697 . + . ID=Phyra77671.2;Parent=Phyra77671;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 ensembl protein_coding_gene 55875 59394 . - . ID=Phyra77672;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000015;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 55875 59394 . - . ID=Phyra77672;Parent=Phyra77672;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 55875 58179 . - 0 ID=Phyra77672;Parent=Phyra77672;rank=3 scaffold_26 . exon 55875 58179 . - . ID=Phyra77672.3;Parent=Phyra77672;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 58553 59018 . - 0 ID=Phyra77672;Parent=Phyra77672;rank=2 scaffold_26 . exon 58553 59018 . - . ID=Phyra77672.2;Parent=Phyra77672;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . CDS 59214 59394 . - 0 ID=Phyra77672;Parent=Phyra77672;rank=1 scaffold_26 . exon 59214 59394 . - . ID=Phyra77672.1;Parent=Phyra77672;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . biological_region 60897 60900 0.999 + . logic_name=eponine scaffold_26 . biological_region 68825 68828 0.999 + . logic_name=eponine scaffold_26 ensembl protein_coding_gene 64618 65663 . - . ID=Phyra77673;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000016;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 64618 65663 . - . ID=Phyra77673;Parent=Phyra77673;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 64618 64625 . - 0 ID=Phyra77673;Parent=Phyra77673;rank=2 scaffold_26 . exon 64618 64625 . - . ID=Phyra77673.2;Parent=Phyra77673;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 64727 65663 . - 0 ID=Phyra77673;Parent=Phyra77673;rank=1 scaffold_26 . exon 64727 65663 . - . ID=Phyra77673.1;Parent=Phyra77673;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 65952 67424 . + . ID=Phyra77674;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000017;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 65952 67424 . + . ID=Phyra77674;Parent=Phyra77674;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 65952 67424 . + 0 ID=Phyra77674;Parent=Phyra77674;rank=1 scaffold_26 . exon 65952 67424 . + . ID=Phyra77674.1;Parent=Phyra77674;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 67910 68963 . - . ID=Phyra77675;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000018;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 67910 68963 . - . ID=Phyra77675;Parent=Phyra77675;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 67910 68045 . - 0 ID=Phyra77675;Parent=Phyra77675;rank=2 scaffold_26 . exon 67910 68045 . - . ID=Phyra77675.2;Parent=Phyra77675;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 68110 68963 . - 0 ID=Phyra77675;Parent=Phyra77675;rank=1 scaffold_26 . exon 68110 68963 . - . ID=Phyra77675.1;Parent=Phyra77675;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . repeat_region 74020 74062 . ? . description=dust scaffold_26 . repeat_region 74027 74050 . ? . description=trf scaffold_26 ensembl protein_coding_gene 77240 78361 . - . ID=Phyra45895;biotype=protein_coding;external_name=gwEuk.26.127.1;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 77240 78361 . - . ID=Phyra45895;Parent=Phyra45895;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 77240 77406 . - 0 ID=Phyra45895;Parent=Phyra45895;rank=6 scaffold_26 . exon 77240 77406 . - . ID=Phyra45895.6;Parent=Phyra45895;constitutive=1;ensembl_phase=1;rank=6 scaffold_26 . CDS 77502 77599 . - 0 ID=Phyra45895;Parent=Phyra45895;rank=5 scaffold_26 . exon 77502 77599 . - . ID=Phyra45895.5;Parent=Phyra45895;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_26 . CDS 77685 77748 . - 0 ID=Phyra45895;Parent=Phyra45895;rank=4 scaffold_26 . exon 77685 77748 . - . ID=Phyra45895.4;Parent=Phyra45895;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_26 . CDS 77815 78007 . - 0 ID=Phyra45895;Parent=Phyra45895;rank=3 scaffold_26 . exon 77815 78007 . - . ID=Phyra45895.3;Parent=Phyra45895;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_26 . CDS 78072 78147 . - 0 ID=Phyra45895;Parent=Phyra45895;rank=2 scaffold_26 . exon 78072 78147 . - . ID=Phyra45895.2;Parent=Phyra45895;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 78219 78361 . - 0 ID=Phyra45895;Parent=Phyra45895;rank=1 scaffold_26 . exon 78219 78361 . - . ID=Phyra45895.1;Parent=Phyra45895;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 69780 72284 . + . ID=Phyra77676;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000019;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 69780 72284 . + . ID=Phyra77676;Parent=Phyra77676;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 69780 72284 . + 0 ID=Phyra77676;Parent=Phyra77676;rank=1 scaffold_26 . exon 69780 72284 . + . ID=Phyra77676.1;Parent=Phyra77676;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 72496 75135 . - . ID=Phyra77677;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000020;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 72496 75135 . - . ID=Phyra77677;Parent=Phyra77677;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 72496 73448 . - 0 ID=Phyra77677;Parent=Phyra77677;rank=2 scaffold_26 . exon 72496 73448 . - . ID=Phyra77677.2;Parent=Phyra77677;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 73518 75135 . - 0 ID=Phyra77677;Parent=Phyra77677;rank=1 scaffold_26 . exon 73518 75135 . - . ID=Phyra77677.1;Parent=Phyra77677;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 76407 76878 . - . ID=Phyra77678;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000021;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 76407 76878 . - . ID=Phyra77678;Parent=Phyra77678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 76407 76784 . - 0 ID=Phyra77678;Parent=Phyra77678;rank=2 scaffold_26 . exon 76407 76784 . - . ID=Phyra77678.2;Parent=Phyra77678;constitutive=1;rank=2 scaffold_26 . CDS 76852 76878 . - 0 ID=Phyra77678;Parent=Phyra77678;rank=1 scaffold_26 . exon 76852 76878 . - . ID=Phyra77678.1;Parent=Phyra77678;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 78524 80933 . + . ID=Phyra77680;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000023;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 78524 80933 . + . ID=Phyra77680;Parent=Phyra77680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 78524 78953 . + 0 ID=Phyra77680;Parent=Phyra77680;rank=1 scaffold_26 . exon 78524 78953 . + . ID=Phyra77680.1;Parent=Phyra77680;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 79020 79296 . + 0 ID=Phyra77680;Parent=Phyra77680;rank=2 scaffold_26 . exon 79020 79296 . + . ID=Phyra77680.2;Parent=Phyra77680;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . CDS 79366 79677 . + 0 ID=Phyra77680;Parent=Phyra77680;rank=3 scaffold_26 . CDS 79905 79930 . + 0 ID=Phyra77680;Parent=Phyra77680;rank=4 scaffold_26 . CDS 80004 80147 . + 0 ID=Phyra77680;Parent=Phyra77680;rank=5 scaffold_26 . CDS 80217 80401 . + 0 ID=Phyra77680;Parent=Phyra77680;rank=6 scaffold_26 . CDS 80467 80568 . + 0 ID=Phyra77680;Parent=Phyra77680;rank=7 scaffold_26 . CDS 80655 80933 . + 0 ID=Phyra77680;Parent=Phyra77680;rank=8 scaffold_26 . biological_region 84096 84099 0.999 - . logic_name=eponine scaffold_26 . biological_region 85984 85990 0.999 - . logic_name=eponine scaffold_26 . biological_region 86450 86452 0.999 + . logic_name=eponine scaffold_26 . biological_region 86483 86484 0.999 - . logic_name=eponine scaffold_26 ensembl pseudogene 84856 85139 . + . ID=Phyra45897;biotype=pseudogene;external_name=gwEuk.26.129.1;logic_name=jgi_phyra1 scaffold_26 ensembl pseudogene 84856 85139 . + . ID=Phyra45897;Parent=Phyra45897;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_26 . exon 84856 85139 . + . ID=Phyra45897.1;Parent=Phyra45897;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 85661 86616 . + . ID=Phyra71545;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_26000002;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 85661 86616 . + . ID=Phyra71545;Parent=Phyra71545;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 85661 85748 . + 0 ID=Phyra71545;Parent=Phyra71545;rank=1 scaffold_26 . exon 85661 85748 . + . ID=Phyra71545.1;Parent=Phyra71545;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 85877 86616 . + 0 ID=Phyra71545;Parent=Phyra71545;rank=2 scaffold_26 . exon 85877 86616 . + . ID=Phyra71545.2;Parent=Phyra71545;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . exon 79366 79677 . + . ID=Phyra77680.3;Parent=Phyra77680;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_26 . exon 79905 79930 . + . ID=Phyra77680.4;Parent=Phyra77680;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_26 . exon 80004 80147 . + . ID=Phyra77680.5;Parent=Phyra77680;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_26 . exon 80217 80401 . + . ID=Phyra77680.6;Parent=Phyra77680;constitutive=1;ensembl_phase=1;rank=6 scaffold_26 . exon 80467 80568 . + . ID=Phyra77680.7;Parent=Phyra77680;constitutive=1;rank=7 scaffold_26 . exon 80655 80933 . + . ID=Phyra77680.8;Parent=Phyra77680;constitutive=1;rank=8 scaffold_26 ensembl protein_coding_gene 81613 84279 . + . ID=Phyra77681;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000024;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 81613 84279 . + . ID=Phyra77681;Parent=Phyra77681;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 81613 81898 . + 0 ID=Phyra77681;Parent=Phyra77681;rank=1 scaffold_26 . exon 81613 81898 . + . ID=Phyra77681.1;Parent=Phyra77681;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 82010 82244 . + 0 ID=Phyra77681;Parent=Phyra77681;rank=2 scaffold_26 . exon 82010 82244 . + . ID=Phyra77681.2;Parent=Phyra77681;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . CDS 82310 82358 . + 0 ID=Phyra77681;Parent=Phyra77681;rank=3 scaffold_26 . exon 82310 82358 . + . ID=Phyra77681.3;Parent=Phyra77681;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 82993 84279 . + 0 ID=Phyra77681;Parent=Phyra77681;rank=4 scaffold_26 . exon 82993 84279 . + . ID=Phyra77681.4;Parent=Phyra77681;constitutive=1;rank=4 scaffold_26 ensembl protein_coding_gene 88129 89398 . + . ID=Phyra77683;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000026;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 88129 89398 . + . ID=Phyra77683;Parent=Phyra77683;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 88129 89153 . + 0 ID=Phyra77683;Parent=Phyra77683;rank=1 scaffold_26 . exon 88129 89153 . + . ID=Phyra77683.1;Parent=Phyra77683;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 89395 89398 . + 0 ID=Phyra77683;Parent=Phyra77683;rank=2 scaffold_26 ensembl protein_coding_gene 84372 84560 . - . ID=Phyra94878;biotype=protein_coding;external_name=C_scaffold_26000010;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 84372 84560 . - . ID=Phyra94878;Parent=Phyra94878;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 84372 84419 . - 0 ID=Phyra94878;Parent=Phyra94878;rank=2 scaffold_26 . exon 84372 84419 . - . ID=Phyra94878.2;Parent=Phyra94878;constitutive=1;rank=2 scaffold_26 . CDS 84450 84560 . - 0 ID=Phyra94878;Parent=Phyra94878;rank=1 scaffold_26 . exon 84450 84560 . - . ID=Phyra94878.1;Parent=Phyra94878;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 97708 98826 . + . ID=Phyra45903;biotype=protein_coding;external_name=gwEuk.26.135.1;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 97708 98826 . + . ID=Phyra45903;Parent=Phyra45903;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 97708 98826 . + 0 ID=Phyra45903;Parent=Phyra45903;rank=1 scaffold_26 . exon 97708 98826 . + . ID=Phyra45903.1;Parent=Phyra45903;constitutive=1;rank=1 scaffold_26 . exon 89395 89398 . + . ID=Phyra77683.2;Parent=Phyra77683;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . repeat_region 102767 102787 . ? . description=trf scaffold_26 . repeat_region 107672 107679 . ? . description=dust scaffold_26 ensembl protein_coding_gene 101347 102885 . - . ID=Phyra77685;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000028;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 101347 102885 . - . ID=Phyra77685;Parent=Phyra77685;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 101347 102885 . - 0 ID=Phyra77685;Parent=Phyra77685;rank=1 scaffold_26 . exon 101347 102885 . - . ID=Phyra77685.1;Parent=Phyra77685;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 104794 105465 . - . ID=Phyra77686;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000029;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 104794 105465 . - . ID=Phyra77686;Parent=Phyra77686;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 104794 105465 . - 0 ID=Phyra77686;Parent=Phyra77686;rank=1 scaffold_26 . exon 104794 105465 . - . ID=Phyra77686.1;Parent=Phyra77686;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 106917 107588 . + . ID=Phyra77687;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000030;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 106917 107588 . + . ID=Phyra77687;Parent=Phyra77687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 106917 107588 . + 0 ID=Phyra77687;Parent=Phyra77687;rank=1 scaffold_26 . exon 106917 107588 . + . ID=Phyra77687.1;Parent=Phyra77687;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 107746 109042 . - . ID=Phyra77688;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000031;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 107746 109042 . - . ID=Phyra77688;Parent=Phyra77688;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 107746 107786 . - 0 ID=Phyra77688;Parent=Phyra77688;rank=7 scaffold_26 . exon 107746 107786 . - . ID=Phyra77688.7;Parent=Phyra77688;constitutive=1;ensembl_phase=1;rank=7 scaffold_26 . CDS 107856 108032 . - 0 ID=Phyra77688;Parent=Phyra77688;rank=6 scaffold_26 . exon 107856 108032 . - . ID=Phyra77688.6;Parent=Phyra77688;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_26 . CDS 108119 108476 . - 0 ID=Phyra77688;Parent=Phyra77688;rank=5 scaffold_26 . exon 108119 108476 . - . ID=Phyra77688.5;Parent=Phyra77688;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_26 . CDS 108529 108606 . - 0 ID=Phyra77688;Parent=Phyra77688;rank=4 scaffold_26 . exon 108529 108606 . - . ID=Phyra77688.4;Parent=Phyra77688;constitutive=1;rank=4 scaffold_26 . CDS 108783 108819 . - 0 ID=Phyra77688;Parent=Phyra77688;rank=3 scaffold_26 . exon 108783 108819 . - . ID=Phyra77688.3;Parent=Phyra77688;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 108886 108907 . - 0 ID=Phyra77688;Parent=Phyra77688;rank=2 scaffold_26 . exon 108886 108907 . - . ID=Phyra77688.2;Parent=Phyra77688;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . CDS 108970 109042 . - 0 ID=Phyra77688;Parent=Phyra77688;rank=1 scaffold_26 . exon 108970 109042 . - . ID=Phyra77688.1;Parent=Phyra77688;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . biological_region 109726 109728 0.999 - . logic_name=eponine scaffold_26 . biological_region 111867 111869 0.999 - . logic_name=eponine scaffold_26 . biological_region 111953 111955 0.999 - . logic_name=eponine scaffold_26 . biological_region 114543 114544 0.999 - . logic_name=eponine scaffold_26 . biological_region 117658 117662 0.999 + . logic_name=eponine scaffold_26 . biological_region 117692 117694 0.999 + . logic_name=eponine scaffold_26 . biological_region 117723 117727 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 112339 113283 . + . ID=Phyra45910;biotype=protein_coding;external_name=gwEuk.26.142.1;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 112339 113283 . + . ID=Phyra45910;Parent=Phyra45910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 112339 112377 . + 0 ID=Phyra45910;Parent=Phyra45910;rank=1 scaffold_26 . exon 112339 112377 . + . ID=Phyra45910.1;Parent=Phyra45910;constitutive=1;rank=1 scaffold_26 . CDS 112440 112463 . + 0 ID=Phyra45910;Parent=Phyra45910;rank=2 scaffold_26 . exon 112440 112463 . + . ID=Phyra45910.2;Parent=Phyra45910;constitutive=1;rank=2 scaffold_26 . CDS 112519 112939 . + 0 ID=Phyra45910;Parent=Phyra45910;rank=3 scaffold_26 . exon 112519 112939 . + . ID=Phyra45910.3;Parent=Phyra45910;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_26 . CDS 113011 113187 . + 0 ID=Phyra45910;Parent=Phyra45910;rank=4 scaffold_26 . exon 113011 113187 . + . ID=Phyra45910.4;Parent=Phyra45910;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_26 . CDS 113249 113283 . + 0 ID=Phyra45910;Parent=Phyra45910;rank=5 scaffold_26 . exon 113249 113283 . + . ID=Phyra45910.5;Parent=Phyra45910;constitutive=1;ensembl_phase=1;rank=5 scaffold_26 ensembl protein_coding_gene 110288 111868 . + . ID=Phyra77689;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000032;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 110288 111868 . + . ID=Phyra77689;Parent=Phyra77689;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 110288 111868 . + 0 ID=Phyra77689;Parent=Phyra77689;rank=1 scaffold_26 . exon 110288 111868 . + . ID=Phyra77689.1;Parent=Phyra77689;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 113434 117811 . - . ID=Phyra77691;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000034;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 113434 117811 . - . ID=Phyra77691;Parent=Phyra77691;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 113434 116739 . - 0 ID=Phyra77691;Parent=Phyra77691;rank=5 scaffold_26 . exon 113434 116739 . - . ID=Phyra77691.5;Parent=Phyra77691;constitutive=1;rank=5 scaffold_26 . CDS 116844 116944 . - 0 ID=Phyra77691;Parent=Phyra77691;rank=4 scaffold_26 . exon 116844 116944 . - . ID=Phyra77691.4;Parent=Phyra77691;constitutive=1;ensembl_phase=1;rank=4 scaffold_26 . CDS 116973 117049 . - 0 ID=Phyra77691;Parent=Phyra77691;rank=3 scaffold_26 . exon 116973 117049 . - . ID=Phyra77691.3;Parent=Phyra77691;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 117233 117532 . - 0 ID=Phyra77691;Parent=Phyra77691;rank=2 scaffold_26 . exon 117233 117532 . - . ID=Phyra77691.2;Parent=Phyra77691;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_26 . CDS 117600 117811 . - 0 ID=Phyra77691;Parent=Phyra77691;rank=1 scaffold_26 . exon 117600 117811 . - . ID=Phyra77691.1;Parent=Phyra77691;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 118861 121847 . - . ID=Phyra94880;biotype=protein_coding;external_name=C_scaffold_26000012;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 118861 121847 . - . ID=Phyra94880;Parent=Phyra94880;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 118861 119112 . - 0 ID=Phyra94880;Parent=Phyra94880;rank=9 scaffold_26 . exon 118861 119112 . - . ID=Phyra94880.9;Parent=Phyra94880;constitutive=1;rank=9 scaffold_26 . CDS 119187 119221 . - 0 ID=Phyra94880;Parent=Phyra94880;rank=8 scaffold_26 . CDS 119287 119647 . - 0 ID=Phyra94880;Parent=Phyra94880;rank=7 scaffold_26 . CDS 119729 119806 . - 0 ID=Phyra94880;Parent=Phyra94880;rank=6 scaffold_26 . CDS 119867 119890 . - 0 ID=Phyra94880;Parent=Phyra94880;rank=5 scaffold_26 . CDS 119967 120003 . - 0 ID=Phyra94880;Parent=Phyra94880;rank=4 scaffold_26 . CDS 120167 120227 . - 0 ID=Phyra94880;Parent=Phyra94880;rank=3 scaffold_26 . CDS 120752 121113 . - 0 ID=Phyra94880;Parent=Phyra94880;rank=2 scaffold_26 . CDS 121171 121847 . - 0 ID=Phyra94880;Parent=Phyra94880;rank=1 scaffold_26 ensembl protein_coding_gene 123194 124087 . + . ID=Phyra71546;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_26000003;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 123194 124087 . + . ID=Phyra71546;Parent=Phyra71546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 123194 123253 . + 0 ID=Phyra71546;Parent=Phyra71546;rank=1 scaffold_26 . exon 123194 123253 . + . ID=Phyra71546.1;Parent=Phyra71546;constitutive=1;rank=1 scaffold_26 . CDS 123278 124087 . + 0 ID=Phyra71546;Parent=Phyra71546;rank=2 scaffold_26 . exon 123278 124087 . + . ID=Phyra71546.2;Parent=Phyra71546;constitutive=1;rank=2 scaffold_26 ensembl protein_coding_gene 126567 129536 . - . ID=Phyra77695;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000038;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 126567 129536 . - . ID=Phyra77695;Parent=Phyra77695;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 126567 126698 . - 0 ID=Phyra77695;Parent=Phyra77695;rank=3 scaffold_26 . exon 126567 126698 . - . ID=Phyra77695.3;Parent=Phyra77695;constitutive=1;rank=3 scaffold_26 . CDS 126766 129331 . - 0 ID=Phyra77695;Parent=Phyra77695;rank=2 scaffold_26 . exon 126766 129331 . - . ID=Phyra77695.2;Parent=Phyra77695;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 129409 129536 . - 0 ID=Phyra77695;Parent=Phyra77695;rank=1 scaffold_26 . exon 119187 119221 . - . ID=Phyra94880.8;Parent=Phyra94880;constitutive=1;ensembl_phase=1;rank=8 scaffold_26 . exon 119287 119647 . - . ID=Phyra94880.7;Parent=Phyra94880;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_26 . exon 119729 119806 . - . ID=Phyra94880.6;Parent=Phyra94880;constitutive=1;rank=6 scaffold_26 . exon 119867 119890 . - . ID=Phyra94880.5;Parent=Phyra94880;constitutive=1;rank=5 scaffold_26 . exon 119967 120003 . - . ID=Phyra94880.4;Parent=Phyra94880;constitutive=1;ensembl_phase=2;rank=4 scaffold_26 . exon 120167 120227 . - . ID=Phyra94880.3;Parent=Phyra94880;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_26 . exon 120752 121113 . - . ID=Phyra94880.2;Parent=Phyra94880;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_26 . exon 121171 121847 . - . ID=Phyra94880.1;Parent=Phyra94880;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . biological_region 129191 129193 0.999 - . logic_name=eponine scaffold_26 . biological_region 130800 130802 0.999 + . logic_name=eponine scaffold_26 . biological_region 130895 130895 0.999 - . logic_name=eponine scaffold_26 . biological_region 131315 131318 0.999 - . logic_name=eponine scaffold_26 . biological_region 132576 132579 0.999 - . logic_name=eponine scaffold_26 . biological_region 132616 132617 0.999 - . logic_name=eponine scaffold_26 . biological_region 134690 134695 0.999 + . logic_name=eponine scaffold_26 . biological_region 134777 134777 0.999 + . logic_name=eponine scaffold_26 . biological_region 134806 134807 0.999 - . logic_name=eponine scaffold_26 . repeat_region 136393 136448 . ? . description=dust scaffold_26 . biological_region 138486 138489 0.999 + . logic_name=eponine scaffold_26 . exon 129409 129536 . - . ID=Phyra77695.1;Parent=Phyra77695;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 130425 130895 . + . ID=Phyra77696;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000039;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 130425 130895 . + . ID=Phyra77696;Parent=Phyra77696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 130425 130895 . + 0 ID=Phyra77696;Parent=Phyra77696;rank=1 scaffold_26 . exon 130425 130895 . + . ID=Phyra77696.1;Parent=Phyra77696;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 131199 131831 . + . ID=Phyra77697;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000040;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 131199 131831 . + . ID=Phyra77697;Parent=Phyra77697;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 131199 131303 . + 0 ID=Phyra77697;Parent=Phyra77697;rank=1 scaffold_26 . exon 131199 131303 . + . ID=Phyra77697.1;Parent=Phyra77697;constitutive=1;rank=1 scaffold_26 . CDS 131372 131578 . + 0 ID=Phyra77697;Parent=Phyra77697;rank=2 scaffold_26 . exon 131372 131578 . + . ID=Phyra77697.2;Parent=Phyra77697;constitutive=1;rank=2 scaffold_26 . CDS 131643 131831 . + 0 ID=Phyra77697;Parent=Phyra77697;rank=3 scaffold_26 . exon 131643 131831 . + . ID=Phyra77697.3;Parent=Phyra77697;constitutive=1;rank=3 scaffold_26 ensembl protein_coding_gene 131970 132662 . - . ID=Phyra77698;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000041;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 131970 132662 . - . ID=Phyra77698;Parent=Phyra77698;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 131970 132662 . - 0 ID=Phyra77698;Parent=Phyra77698;rank=1 scaffold_26 . exon 131970 132662 . - . ID=Phyra77698.1;Parent=Phyra77698;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 132941 134011 . + . ID=Phyra77699;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000042;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 132941 134011 . + . ID=Phyra77699;Parent=Phyra77699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 132941 134011 . + 0 ID=Phyra77699;Parent=Phyra77699;rank=1 scaffold_26 . exon 132941 134011 . + . ID=Phyra77699.1;Parent=Phyra77699;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 134453 136639 . + . ID=Phyra77700;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000043;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 134453 136639 . + . ID=Phyra77700;Parent=Phyra77700;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 134453 136639 . + 0 ID=Phyra77700;Parent=Phyra77700;rank=1 scaffold_26 . exon 134453 136639 . + . ID=Phyra77700.1;Parent=Phyra77700;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 137667 138633 . + . ID=Phyra77701;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000044;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 137667 138633 . + . ID=Phyra77701;Parent=Phyra77701;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 137667 137808 . + 0 ID=Phyra77701;Parent=Phyra77701;rank=1 scaffold_26 . exon 137667 137808 . + . ID=Phyra77701.1;Parent=Phyra77701;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 137894 138257 . + 0 ID=Phyra77701;Parent=Phyra77701;rank=2 scaffold_26 . exon 137894 138257 . + . ID=Phyra77701.2;Parent=Phyra77701;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . CDS 138477 138633 . + 0 ID=Phyra77701;Parent=Phyra77701;rank=3 scaffold_26 . exon 138477 138633 . + . ID=Phyra77701.3;Parent=Phyra77701;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 ensembl protein_coding_gene 139101 141640 . + . ID=Phyra77702;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000045;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 139101 141640 . + . ID=Phyra77702;Parent=Phyra77702;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 139101 139256 . + 0 ID=Phyra77702;Parent=Phyra77702;rank=1 scaffold_26 . exon 139101 139256 . + . ID=Phyra77702.1;Parent=Phyra77702;constitutive=1;rank=1 scaffold_26 . CDS 139324 139623 . + 0 ID=Phyra77702;Parent=Phyra77702;rank=2 scaffold_26 . exon 139324 139623 . + . ID=Phyra77702.2;Parent=Phyra77702;constitutive=1;rank=2 scaffold_26 . CDS 139697 139807 . + 0 ID=Phyra77702;Parent=Phyra77702;rank=3 scaffold_26 . exon 139697 139807 . + . ID=Phyra77702.3;Parent=Phyra77702;constitutive=1;rank=3 scaffold_26 . CDS 140266 141063 . + 0 ID=Phyra77702;Parent=Phyra77702;rank=4 scaffold_26 . exon 140266 141063 . + . ID=Phyra77702.4;Parent=Phyra77702;constitutive=1;rank=4 scaffold_26 . CDS 141134 141640 . + 0 ID=Phyra77702;Parent=Phyra77702;rank=5 scaffold_26 . exon 141134 141640 . + . ID=Phyra77702.5;Parent=Phyra77702;constitutive=1;rank=5 scaffold_26 ensembl protein_coding_gene 144137 146190 . - . ID=Phyra77704;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000047;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 144137 146190 . - . ID=Phyra77704;Parent=Phyra77704;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 144137 144200 . - 0 ID=Phyra77704;Parent=Phyra77704;rank=3 scaffold_26 . exon 144137 144200 . - . ID=Phyra77704.3;Parent=Phyra77704;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 144236 144312 . - 0 ID=Phyra77704;Parent=Phyra77704;rank=2 scaffold_26 . exon 144236 144312 . - . ID=Phyra77704.2;Parent=Phyra77704;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_26 . CDS 144379 146190 . - 0 ID=Phyra77704;Parent=Phyra77704;rank=1 scaffold_26 . exon 144379 146190 . - . ID=Phyra77704.1;Parent=Phyra77704;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 148665 150005 . + . ID=Phyra77705;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000048;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 148665 150005 . + . ID=Phyra77705;Parent=Phyra77705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 148665 148694 . + 0 ID=Phyra77705;Parent=Phyra77705;rank=1 scaffold_26 . exon 148665 148694 . + . ID=Phyra77705.1;Parent=Phyra77705;constitutive=1;rank=1 scaffold_26 . CDS 149232 150005 . + 0 ID=Phyra77705;Parent=Phyra77705;rank=2 scaffold_26 ensembl protein_coding_gene 141775 142917 . - . ID=Phyra94884;biotype=protein_coding;external_name=C_scaffold_26000016;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 141775 142917 . - . ID=Phyra94884;Parent=Phyra94884;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 141775 142689 . - 0 ID=Phyra94884;Parent=Phyra94884;rank=2 scaffold_26 . exon 141775 142689 . - . ID=Phyra94884.2;Parent=Phyra94884;constitutive=1;rank=2 scaffold_26 . CDS 142723 142917 . - 0 ID=Phyra94884;Parent=Phyra94884;rank=1 scaffold_26 . exon 142723 142917 . - . ID=Phyra94884.1;Parent=Phyra94884;constitutive=1;rank=1 scaffold_26 . repeat_region 153285 153317 . ? . description=trf scaffold_26 . repeat_region 154800 154839 . ? . description=trf scaffold_26 . repeat_region 154803 154829 . ? . description=trf scaffold_26 . biological_region 155275 155276 0.999 + . logic_name=eponine scaffold_26 ensembl protein_coding_gene 151413 152645 . - . ID=Phyra71547;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_26000004;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 151413 152645 . - . ID=Phyra71547;Parent=Phyra71547;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 151413 152645 . - 0 ID=Phyra71547;Parent=Phyra71547;rank=1 scaffold_26 . exon 151413 152645 . - . ID=Phyra71547.1;Parent=Phyra71547;constitutive=1;rank=1 scaffold_26 . exon 149232 150005 . + . ID=Phyra77705.2;Parent=Phyra77705;constitutive=1;rank=2 scaffold_26 ensembl protein_coding_gene 152973 155544 . - . ID=Phyra77707;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000050;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 152973 155544 . - . ID=Phyra77707;Parent=Phyra77707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 152973 155450 . - 0 ID=Phyra77707;Parent=Phyra77707;rank=2 scaffold_26 . exon 152973 155450 . - . ID=Phyra77707.2;Parent=Phyra77707;constitutive=1;rank=2 scaffold_26 . CDS 155530 155544 . - 0 ID=Phyra77707;Parent=Phyra77707;rank=1 scaffold_26 . exon 155530 155544 . - . ID=Phyra77707.1;Parent=Phyra77707;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 155887 157161 . + . ID=Phyra77708;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000051;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 155887 157161 . + . ID=Phyra77708;Parent=Phyra77708;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 155887 155966 . + 0 ID=Phyra77708;Parent=Phyra77708;rank=1 scaffold_26 . exon 155887 155966 . + . ID=Phyra77708.1;Parent=Phyra77708;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 156035 156932 . + 0 ID=Phyra77708;Parent=Phyra77708;rank=2 scaffold_26 . exon 156035 156932 . + . ID=Phyra77708.2;Parent=Phyra77708;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 157006 157161 . + 0 ID=Phyra77708;Parent=Phyra77708;rank=3 scaffold_26 . exon 157006 157161 . + . ID=Phyra77708.3;Parent=Phyra77708;constitutive=1;rank=3 scaffold_26 ensembl protein_coding_gene 158339 160252 . + . ID=Phyra77709;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000052;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 158339 160252 . + . ID=Phyra77709;Parent=Phyra77709;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 158339 160252 . + 0 ID=Phyra77709;Parent=Phyra77709;rank=1 scaffold_26 . exon 158339 160252 . + . ID=Phyra77709.1;Parent=Phyra77709;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 160555 161598 . - . ID=Phyra77710;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000053;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 160555 161598 . - . ID=Phyra77710;Parent=Phyra77710;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 160555 161598 . - 0 ID=Phyra77710;Parent=Phyra77710;rank=1 scaffold_26 . exon 160555 161598 . - . ID=Phyra77710.1;Parent=Phyra77710;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 161952 162995 . - . ID=Phyra77711;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000054;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 161952 162995 . - . ID=Phyra77711;Parent=Phyra77711;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 161952 162995 . - 0 ID=Phyra77711;Parent=Phyra77711;rank=1 scaffold_26 . exon 161952 162995 . - . ID=Phyra77711.1;Parent=Phyra77711;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 164578 166491 . + . ID=Phyra77712;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000055;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 164578 166491 . + . ID=Phyra77712;Parent=Phyra77712;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 164578 166491 . + 0 ID=Phyra77712;Parent=Phyra77712;rank=1 scaffold_26 . exon 164578 166491 . + . ID=Phyra77712.1;Parent=Phyra77712;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 168100 169866 . + . ID=Phyra77713;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000056;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 168100 169866 . + . ID=Phyra77713;Parent=Phyra77713;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 168100 169866 . + 0 ID=Phyra77713;Parent=Phyra77713;rank=1 scaffold_26 . exon 168100 169866 . + . ID=Phyra77713.1;Parent=Phyra77713;constitutive=1;rank=1 scaffold_26 . repeat_region 168627 168647 . ? . description=trf scaffold_26 . repeat_region 168769 168811 . ? . description=trf scaffold_26 . biological_region 170424 170425 0.999 - . logic_name=eponine scaffold_26 . repeat_region 171774 171926 . - . description=Gypsy-1-LTR_PI scaffold_26 . repeat_region 175893 175927 . ? . description=dust scaffold_26 . repeat_region 175984 175992 . ? . description=dust scaffold_26 . biological_region 176633 176635 0.999 + . logic_name=eponine scaffold_26 ensembl protein_coding_gene 187080 188108 . - . ID=Phyra45942;biotype=protein_coding;external_name=gwEuk.26.174.1;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 187080 188108 . - . ID=Phyra45942;Parent=Phyra45942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 187080 188108 . - 0 ID=Phyra45942;Parent=Phyra45942;rank=1 scaffold_26 . exon 187080 188108 . - . ID=Phyra45942.1;Parent=Phyra45942;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 182647 183081 . + . ID=Phyra77714;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000057;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 182647 183081 . + . ID=Phyra77714;Parent=Phyra77714;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 182647 183081 . + 0 ID=Phyra77714;Parent=Phyra77714;rank=1 scaffold_26 . exon 182647 183081 . + . ID=Phyra77714.1;Parent=Phyra77714;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 184695 186026 . - . ID=Phyra77715;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000058;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 184695 186026 . - . ID=Phyra77715;Parent=Phyra77715;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 184695 186026 . - 0 ID=Phyra77715;Parent=Phyra77715;rank=1 scaffold_26 . exon 184695 186026 . - . ID=Phyra77715.1;Parent=Phyra77715;constitutive=1;rank=1 scaffold_26 . repeat_region 188507 188515 . ? . description=dust scaffold_26 . repeat_region 189116 189143 . ? . description=trf scaffold_26 . repeat_region 190056 190105 . ? . description=dust scaffold_26 . repeat_region 191063 191112 . ? . description=dust scaffold_26 . biological_region 191576 191578 0.999 + . logic_name=eponine scaffold_26 . biological_region 191624 191631 0.999 - . logic_name=eponine scaffold_26 . repeat_region 193284 193296 . ? . description=dust scaffold_26 . biological_region 193583 193589 0.999 + . logic_name=eponine scaffold_26 . repeat_region 195462 195535 . ? . description=trf scaffold_26 . biological_region 195754 195755 0.999 + . logic_name=eponine scaffold_26 . biological_region 195940 195942 0.999 + . logic_name=eponine scaffold_26 . biological_region 196040 196044 0.999 - . logic_name=eponine scaffold_26 . biological_region 196101 196101 0.999 + . logic_name=eponine scaffold_26 . biological_region 196196 196200 0.999 + . logic_name=eponine scaffold_26 . biological_region 196219 196224 0.999 - . logic_name=eponine scaffold_26 . repeat_region 197811 197860 . ? . description=dust scaffold_26 . repeat_region 197976 197986 . ? . description=dust scaffold_26 ensembl protein_coding_gene 189358 190015 . - . ID=Phyra77717;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000060;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 189358 190015 . - . ID=Phyra77717;Parent=Phyra77717;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 189358 189593 . - 0 ID=Phyra77717;Parent=Phyra77717;rank=4 scaffold_26 . exon 189358 189593 . - . ID=Phyra77717.4;Parent=Phyra77717;constitutive=1;ensembl_phase=1;rank=4 scaffold_26 . CDS 189650 189713 . - 0 ID=Phyra77717;Parent=Phyra77717;rank=3 scaffold_26 . exon 189650 189713 . - . ID=Phyra77717.3;Parent=Phyra77717;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_26 . CDS 189816 189911 . - 0 ID=Phyra77717;Parent=Phyra77717;rank=2 scaffold_26 . exon 189816 189911 . - . ID=Phyra77717.2;Parent=Phyra77717;constitutive=1;rank=2 scaffold_26 . CDS 189992 190015 . - 0 ID=Phyra77717;Parent=Phyra77717;rank=1 scaffold_26 . exon 189992 190015 . - . ID=Phyra77717.1;Parent=Phyra77717;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 191244 193118 . + . ID=Phyra77718;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000061;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 191244 193118 . + . ID=Phyra77718;Parent=Phyra77718;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 191244 191839 . + 0 ID=Phyra77718;Parent=Phyra77718;rank=1 scaffold_26 . exon 191244 191839 . + . ID=Phyra77718.1;Parent=Phyra77718;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 192059 193118 . + 0 ID=Phyra77718;Parent=Phyra77718;rank=2 scaffold_26 . exon 192059 193118 . + . ID=Phyra77718.2;Parent=Phyra77718;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 ensembl protein_coding_gene 193370 194385 . - . ID=Phyra77719;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000062;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 193370 194385 . - . ID=Phyra77719;Parent=Phyra77719;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 193370 193540 . - 0 ID=Phyra77719;Parent=Phyra77719;rank=2 scaffold_26 . exon 193370 193540 . - . ID=Phyra77719.2;Parent=Phyra77719;constitutive=1;rank=2 scaffold_26 . CDS 193615 194385 . - 0 ID=Phyra77719;Parent=Phyra77719;rank=1 scaffold_26 . exon 193615 194385 . - . ID=Phyra77719.1;Parent=Phyra77719;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 198819 199898 . + . ID=Phyra77720;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000063;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 198819 199898 . + . ID=Phyra77720;Parent=Phyra77720;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 198819 199898 . + 0 ID=Phyra77720;Parent=Phyra77720;rank=1 scaffold_26 . exon 198819 199898 . + . ID=Phyra77720.1;Parent=Phyra77720;constitutive=1;rank=1 scaffold_26 . repeat_region 212490 212795 . + . description=GypsyPi-1c_LTR scaffold_26 . repeat_region 212796 214052 . + . description=GypsyPi-1c_I-int scaffold_26 . biological_region 213722 213725 0.999 + . logic_name=eponine scaffold_26 . repeat_region 214082 215019 . + . description=GypsyPi-1c_I-int scaffold_26 . repeat_region 215282 215452 . + . description=GypsyPi-1c_I-int scaffold_26 . repeat_region 215645 215717 . + . description=GypsyPi-1c_I-int scaffold_26 . repeat_region 215845 215921 . + . description=GypsyPi-1c_I-int scaffold_26 . repeat_region 216991 217296 . + . description=GypsyPi-1c_LTR scaffold_26 ensembl pseudogene 208504 212185 . + . ID=Phyra45776;biotype=pseudogene;external_name=gwEuk.26.8.1;logic_name=jgi_phyra1 scaffold_26 ensembl pseudogene 208504 212185 . + . ID=Phyra45776;Parent=Phyra45776;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_26 . exon 208504 208944 . + . ID=Phyra45776.1;Parent=Phyra45776;constitutive=1;rank=1 scaffold_26 . exon 208960 210321 . + . ID=Phyra45776.2;Parent=Phyra45776;constitutive=1;rank=2 scaffold_26 . exon 210693 211434 . + . ID=Phyra45776.3;Parent=Phyra45776;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_26 . exon 211458 212185 . + . ID=Phyra45776.4;Parent=Phyra45776;constitutive=1;ensembl_phase=1;rank=4 scaffold_26 ensembl protein_coding_gene 212882 213673 . + . ID=Phyra77722;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000065;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 212882 213673 . + . ID=Phyra77722;Parent=Phyra77722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 212882 213310 . + 0 ID=Phyra77722;Parent=Phyra77722;rank=1 scaffold_26 . exon 212882 213310 . + . ID=Phyra77722.1;Parent=Phyra77722;constitutive=1;rank=1 scaffold_26 . CDS 213387 213603 . + 0 ID=Phyra77722;Parent=Phyra77722;rank=2 scaffold_26 . exon 213387 213603 . + . ID=Phyra77722.2;Parent=Phyra77722;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_26 . CDS 213651 213673 . + 0 ID=Phyra77722;Parent=Phyra77722;rank=3 scaffold_26 . exon 213651 213673 . + . ID=Phyra77722.3;Parent=Phyra77722;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 ensembl protein_coding_gene 217828 223921 . + . ID=Phyra77723;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000066;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 217828 223921 . + . ID=Phyra77723;Parent=Phyra77723;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 217828 218273 . + 0 ID=Phyra77723;Parent=Phyra77723;rank=1 scaffold_26 . exon 217828 218273 . + . ID=Phyra77723.1;Parent=Phyra77723;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 218344 218497 . + 0 ID=Phyra77723;Parent=Phyra77723;rank=2 scaffold_26 . CDS 218570 223921 . + 0 ID=Phyra77723;Parent=Phyra77723;rank=3 scaffold_26 . repeat_region 227010 227042 . ? . description=trf scaffold_26 . exon 218344 218497 . + . ID=Phyra77723.2;Parent=Phyra77723;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . exon 218570 223921 . + . ID=Phyra77723.3;Parent=Phyra77723;constitutive=1;rank=3 scaffold_26 ensembl protein_coding_gene 225067 225472 . + . ID=Phyra77724;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000067;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 225067 225472 . + . ID=Phyra77724;Parent=Phyra77724;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 225067 225310 . + 0 ID=Phyra77724;Parent=Phyra77724;rank=1 scaffold_26 . exon 225067 225310 . + . ID=Phyra77724.1;Parent=Phyra77724;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 225384 225472 . + 0 ID=Phyra77724;Parent=Phyra77724;rank=2 scaffold_26 . exon 225384 225472 . + . ID=Phyra77724.2;Parent=Phyra77724;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 ensembl protein_coding_gene 225625 229014 . - . ID=Phyra77725;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000068;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 225625 229014 . - . ID=Phyra77725;Parent=Phyra77725;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 225625 227890 . - 0 ID=Phyra77725;Parent=Phyra77725;rank=7 scaffold_26 . exon 225625 227890 . - . ID=Phyra77725.7;Parent=Phyra77725;constitutive=1;ensembl_phase=2;rank=7 scaffold_26 . CDS 227951 228034 . - 0 ID=Phyra77725;Parent=Phyra77725;rank=6 scaffold_26 . exon 227951 228034 . - . ID=Phyra77725.6;Parent=Phyra77725;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_26 . CDS 228199 228309 . - 0 ID=Phyra77725;Parent=Phyra77725;rank=5 scaffold_26 . CDS 228371 228553 . - 0 ID=Phyra77725;Parent=Phyra77725;rank=4 scaffold_26 . CDS 228625 228739 . - 0 ID=Phyra77725;Parent=Phyra77725;rank=3 scaffold_26 . CDS 228806 228872 . - 0 ID=Phyra77725;Parent=Phyra77725;rank=2 scaffold_26 . CDS 228934 229014 . - 0 ID=Phyra77725;Parent=Phyra77725;rank=1 scaffold_26 . biological_region 236267 236270 0.999 + . logic_name=eponine scaffold_26 . biological_region 236308 236308 0.999 + . logic_name=eponine scaffold_26 . exon 228199 228309 . - . ID=Phyra77725.5;Parent=Phyra77725;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_26 . exon 228371 228553 . - . ID=Phyra77725.4;Parent=Phyra77725;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_26 . exon 228625 228739 . - . ID=Phyra77725.3;Parent=Phyra77725;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_26 . exon 228806 228872 . - . ID=Phyra77725.2;Parent=Phyra77725;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_26 . exon 228934 229014 . - . ID=Phyra77725.1;Parent=Phyra77725;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 233941 234978 . - . ID=Phyra77726;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000069;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 233941 234978 . - . ID=Phyra77726;Parent=Phyra77726;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 233941 234585 . - 0 ID=Phyra77726;Parent=Phyra77726;rank=3 scaffold_26 . exon 233941 234585 . - . ID=Phyra77726.3;Parent=Phyra77726;constitutive=1;rank=3 scaffold_26 . CDS 234650 234720 . - 0 ID=Phyra77726;Parent=Phyra77726;rank=2 scaffold_26 . exon 234650 234720 . - . ID=Phyra77726.2;Parent=Phyra77726;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 234774 234978 . - 0 ID=Phyra77726;Parent=Phyra77726;rank=1 scaffold_26 . exon 234774 234978 . - . ID=Phyra77726.1;Parent=Phyra77726;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 236192 241162 . - . ID=Phyra77727;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000070;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 236192 241162 . - . ID=Phyra77727;Parent=Phyra77727;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 236192 236479 . - 0 ID=Phyra77727;Parent=Phyra77727;rank=11 scaffold_26 . exon 236192 236479 . - . ID=Phyra77727.11;Parent=Phyra77727;constitutive=1;rank=11 scaffold_26 . CDS 236547 236620 . - 0 ID=Phyra77727;Parent=Phyra77727;rank=10 scaffold_26 . exon 236547 236620 . - . ID=Phyra77727.10;Parent=Phyra77727;constitutive=1;ensembl_phase=1;rank=10 scaffold_26 . CDS 236686 236948 . - 0 ID=Phyra77727;Parent=Phyra77727;rank=9 scaffold_26 . exon 236686 236948 . - . ID=Phyra77727.9;Parent=Phyra77727;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_26 . CDS 237387 238621 . - 0 ID=Phyra77727;Parent=Phyra77727;rank=8 scaffold_26 . exon 237387 238621 . - . ID=Phyra77727.8;Parent=Phyra77727;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_26 . CDS 238696 238766 . - 0 ID=Phyra77727;Parent=Phyra77727;rank=7 scaffold_26 . CDS 238856 239090 . - 0 ID=Phyra77727;Parent=Phyra77727;rank=6 scaffold_26 . CDS 239405 239525 . - 0 ID=Phyra77727;Parent=Phyra77727;rank=5 scaffold_26 . CDS 239580 240523 . - 0 ID=Phyra77727;Parent=Phyra77727;rank=4 scaffold_26 . CDS 240602 240672 . - 0 ID=Phyra77727;Parent=Phyra77727;rank=3 scaffold_26 . CDS 240744 241078 . - 0 ID=Phyra77727;Parent=Phyra77727;rank=2 scaffold_26 . CDS 241137 241162 . - 0 ID=Phyra77727;Parent=Phyra77727;rank=1 scaffold_26 . repeat_region 238017 238114 . ? . description=trf scaffold_26 . repeat_region 238116 238348 . ? . description=trf scaffold_26 . repeat_region 240158 240258 . ? . description=trf scaffold_26 . repeat_region 240174 240252 . ? . description=trf scaffold_26 . repeat_region 242940 242948 . ? . description=dust scaffold_26 . repeat_region 243396 243510 . ? . description=trf scaffold_26 . repeat_region 243428 243510 . ? . description=trf scaffold_26 . repeat_region 243428 243513 . ? . description=trf scaffold_26 . repeat_region 243528 243624 . ? . description=trf scaffold_26 . repeat_region 243537 243579 . ? . description=trf scaffold_26 . repeat_region 243560 243612 . ? . description=trf scaffold_26 . exon 238696 238766 . - . ID=Phyra77727.7;Parent=Phyra77727;constitutive=1;ensembl_phase=1;rank=7 scaffold_26 . exon 238856 239090 . - . ID=Phyra77727.6;Parent=Phyra77727;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_26 . exon 239405 239525 . - . ID=Phyra77727.5;Parent=Phyra77727;constitutive=1;ensembl_phase=2;rank=5 scaffold_26 . exon 239580 240523 . - . ID=Phyra77727.4;Parent=Phyra77727;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_26 . exon 240602 240672 . - . ID=Phyra77727.3;Parent=Phyra77727;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 . exon 240744 241078 . - . ID=Phyra77727.2;Parent=Phyra77727;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_26 . exon 241137 241162 . - . ID=Phyra77727.1;Parent=Phyra77727;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 242687 244093 . + . ID=Phyra77728;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000071;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 242687 244093 . + . ID=Phyra77728;Parent=Phyra77728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 242687 242912 . + 0 ID=Phyra77728;Parent=Phyra77728;rank=1 scaffold_26 . exon 242687 242912 . + . ID=Phyra77728.1;Parent=Phyra77728;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 242986 243056 . + 0 ID=Phyra77728;Parent=Phyra77728;rank=2 scaffold_26 . exon 242986 243056 . + . ID=Phyra77728.2;Parent=Phyra77728;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 243131 244093 . + 0 ID=Phyra77728;Parent=Phyra77728;rank=3 scaffold_26 . exon 243131 244093 . + . ID=Phyra77728.3;Parent=Phyra77728;constitutive=1;rank=3 scaffold_26 ensembl protein_coding_gene 244486 248202 . - . ID=Phyra77729;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000072;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 244486 248202 . - . ID=Phyra77729;Parent=Phyra77729;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 244486 246018 . - 0 ID=Phyra77729;Parent=Phyra77729;rank=3 scaffold_26 . exon 244486 246018 . - . ID=Phyra77729.3;Parent=Phyra77729;constitutive=1;rank=3 scaffold_26 . CDS 246436 246542 . - 0 ID=Phyra77729;Parent=Phyra77729;rank=2 scaffold_26 . exon 246436 246542 . - . ID=Phyra77729.2;Parent=Phyra77729;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 246699 248202 . - 0 ID=Phyra77729;Parent=Phyra77729;rank=1 scaffold_26 . exon 246699 248202 . - . ID=Phyra77729.1;Parent=Phyra77729;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . biological_region 247902 247906 0.999 + . logic_name=eponine scaffold_26 . biological_region 252026 252029 0.999 - . logic_name=eponine scaffold_26 . biological_region 252039 252041 0.999 + . logic_name=eponine scaffold_26 . biological_region 253535 253538 0.999 + . logic_name=eponine scaffold_26 . biological_region 255424 255424 0.999 + . logic_name=eponine scaffold_26 . biological_region 256445 256450 0.999 + . logic_name=eponine scaffold_26 . biological_region 256692 256693 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 248936 251853 . - . ID=Phyra77730;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000073;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 248936 251853 . - . ID=Phyra77730;Parent=Phyra77730;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 248936 249047 . - 0 ID=Phyra77730;Parent=Phyra77730;rank=7 scaffold_26 . exon 248936 249047 . - . ID=Phyra77730.7;Parent=Phyra77730;constitutive=1;ensembl_phase=2;rank=7 scaffold_26 . CDS 249109 249422 . - 0 ID=Phyra77730;Parent=Phyra77730;rank=6 scaffold_26 . exon 249109 249422 . - . ID=Phyra77730.6;Parent=Phyra77730;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_26 . CDS 249488 250012 . - 0 ID=Phyra77730;Parent=Phyra77730;rank=5 scaffold_26 . exon 249488 250012 . - . ID=Phyra77730.5;Parent=Phyra77730;constitutive=1;rank=5 scaffold_26 . CDS 250074 250348 . - 0 ID=Phyra77730;Parent=Phyra77730;rank=4 scaffold_26 . exon 250074 250348 . - . ID=Phyra77730.4;Parent=Phyra77730;constitutive=1;ensembl_phase=1;rank=4 scaffold_26 . CDS 250503 250564 . - 0 ID=Phyra77730;Parent=Phyra77730;rank=3 scaffold_26 . exon 250503 250564 . - . ID=Phyra77730.3;Parent=Phyra77730;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 250616 251567 . - 0 ID=Phyra77730;Parent=Phyra77730;rank=2 scaffold_26 . exon 250616 251567 . - . ID=Phyra77730.2;Parent=Phyra77730;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . CDS 251646 251853 . - 0 ID=Phyra77730;Parent=Phyra77730;rank=1 scaffold_26 . exon 251646 251853 . - . ID=Phyra77730.1;Parent=Phyra77730;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 252782 257176 . + . ID=Phyra77731;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000074;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 252782 257176 . + . ID=Phyra77731;Parent=Phyra77731;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 252782 252898 . + 0 ID=Phyra77731;Parent=Phyra77731;rank=1 scaffold_26 . exon 252782 252898 . + . ID=Phyra77731.1;Parent=Phyra77731;constitutive=1;rank=1 scaffold_26 . CDS 252993 253367 . + 0 ID=Phyra77731;Parent=Phyra77731;rank=2 scaffold_26 . exon 252993 253367 . + . ID=Phyra77731.2;Parent=Phyra77731;constitutive=1;rank=2 scaffold_26 . CDS 253435 253574 . + 0 ID=Phyra77731;Parent=Phyra77731;rank=3 scaffold_26 . exon 253435 253574 . + . ID=Phyra77731.3;Parent=Phyra77731;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_26 . CDS 253834 254741 . + 0 ID=Phyra77731;Parent=Phyra77731;rank=4 scaffold_26 . exon 253834 254741 . + . ID=Phyra77731.4;Parent=Phyra77731;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_26 . CDS 254892 257176 . + 0 ID=Phyra77731;Parent=Phyra77731;rank=5 scaffold_26 . exon 254892 257176 . + . ID=Phyra77731.5;Parent=Phyra77731;constitutive=1;ensembl_phase=1;rank=5 scaffold_26 . repeat_region 257812 257824 . ? . description=dust scaffold_26 . repeat_region 259791 259801 . ? . description=dust scaffold_26 . repeat_region 263121 263191 . ? . description=trf scaffold_26 . repeat_region 263124 263160 . ? . description=trf scaffold_26 . repeat_region 263194 263253 . ? . description=dust scaffold_26 . repeat_region 263204 263256 . ? . description=trf scaffold_26 . repeat_region 263255 263301 . ? . description=trf scaffold_26 . repeat_region 265516 265556 . ? . description=trf scaffold_26 ensembl protein_coding_gene 263321 263596 . + . ID=Phyra45783;biotype=protein_coding;external_name=gwEuk.26.15.1;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 263321 263596 . + . ID=Phyra45783;Parent=Phyra45783;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 263321 263596 . + 0 ID=Phyra45783;Parent=Phyra45783;rank=1 scaffold_26 . exon 263321 263596 . + . ID=Phyra45783.1;Parent=Phyra45783;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 263808 266693 . + . ID=Phyra77735;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000078;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 263808 266693 . + . ID=Phyra77735;Parent=Phyra77735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 263808 265785 . + 0 ID=Phyra77735;Parent=Phyra77735;rank=1 scaffold_26 . exon 263808 265785 . + . ID=Phyra77735.1;Parent=Phyra77735;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 266014 266027 . + 0 ID=Phyra77735;Parent=Phyra77735;rank=2 scaffold_26 . exon 266014 266027 . + . ID=Phyra77735.2;Parent=Phyra77735;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 266104 266213 . + 0 ID=Phyra77735;Parent=Phyra77735;rank=3 scaffold_26 . exon 266104 266213 . + . ID=Phyra77735.3;Parent=Phyra77735;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_26 . CDS 266270 266693 . + 0 ID=Phyra77735;Parent=Phyra77735;rank=4 scaffold_26 . exon 266270 266693 . + . ID=Phyra77735.4;Parent=Phyra77735;constitutive=1;ensembl_phase=2;rank=4 scaffold_26 ensembl protein_coding_gene 260161 261639 . + . ID=Phyra94892;biotype=protein_coding;external_name=C_scaffold_26000024;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 260161 261639 . + . ID=Phyra94892;Parent=Phyra94892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 260161 261261 . + 0 ID=Phyra94892;Parent=Phyra94892;rank=1 scaffold_26 . exon 260161 261261 . + . ID=Phyra94892.1;Parent=Phyra94892;constitutive=1;rank=1 scaffold_26 . CDS 261313 261639 . + 0 ID=Phyra94892;Parent=Phyra94892;rank=2 scaffold_26 . exon 261313 261639 . + . ID=Phyra94892.2;Parent=Phyra94892;constitutive=1;rank=2 scaffold_26 ensembl protein_coding_gene 261803 262879 . - . ID=Phyra94893;biotype=protein_coding;external_name=C_scaffold_26000025;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 261803 262879 . - . ID=Phyra94893;Parent=Phyra94893;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 261803 261821 . - 0 ID=Phyra94893;Parent=Phyra94893;rank=4 scaffold_26 . exon 261803 261821 . - . ID=Phyra94893.4;Parent=Phyra94893;constitutive=1;ensembl_phase=2;rank=4 scaffold_26 . CDS 261916 262465 . - 0 ID=Phyra94893;Parent=Phyra94893;rank=3 scaffold_26 . exon 261916 262465 . - . ID=Phyra94893.3;Parent=Phyra94893;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_26 . CDS 262598 262694 . - 0 ID=Phyra94893;Parent=Phyra94893;rank=2 scaffold_26 . exon 262598 262694 . - . ID=Phyra94893.2;Parent=Phyra94893;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_26 . CDS 262760 262879 . - 0 ID=Phyra94893;Parent=Phyra94893;rank=1 scaffold_26 . exon 262760 262879 . - . ID=Phyra94893.1;Parent=Phyra94893;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 266850 267954 . - . ID=Phyra94896;biotype=protein_coding;external_name=C_scaffold_26000028;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 266850 267954 . - . ID=Phyra94896;Parent=Phyra94896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 266850 267087 . - 0 ID=Phyra94896;Parent=Phyra94896;rank=3 scaffold_26 . exon 266850 267087 . - . ID=Phyra94896.3;Parent=Phyra94896;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 267151 267310 . - 0 ID=Phyra94896;Parent=Phyra94896;rank=2 scaffold_26 . exon 267151 267310 . - . ID=Phyra94896.2;Parent=Phyra94896;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . CDS 267378 267954 . - 0 ID=Phyra94896;Parent=Phyra94896;rank=1 scaffold_26 . exon 267378 267954 . - . ID=Phyra94896.1;Parent=Phyra94896;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 268599 269061 . - . ID=Phyra77737;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000080;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 268599 269061 . - . ID=Phyra77737;Parent=Phyra77737;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 268599 268852 . - 0 ID=Phyra77737;Parent=Phyra77737;rank=2 scaffold_26 . exon 268599 268852 . - . ID=Phyra77737.2;Parent=Phyra77737;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 268929 269061 . - 0 ID=Phyra77737;Parent=Phyra77737;rank=1 scaffold_26 . exon 268929 269061 . - . ID=Phyra77737.1;Parent=Phyra77737;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 272103 272729 . - . ID=Phyra77738;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000081;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 272103 272729 . - . ID=Phyra77738;Parent=Phyra77738;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 272103 272480 . - 0 ID=Phyra77738;Parent=Phyra77738;rank=2 scaffold_26 . exon 272103 272480 . - . ID=Phyra77738.2;Parent=Phyra77738;constitutive=1;rank=2 scaffold_26 . CDS 272556 272729 . - 0 ID=Phyra77738;Parent=Phyra77738;rank=1 scaffold_26 . exon 272556 272729 . - . ID=Phyra77738.1;Parent=Phyra77738;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 273242 274660 . + . ID=Phyra77739;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000082;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 273242 274660 . + . ID=Phyra77739;Parent=Phyra77739;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 273242 274660 . + 0 ID=Phyra77739;Parent=Phyra77739;rank=1 scaffold_26 . exon 273242 274660 . + . ID=Phyra77739.1;Parent=Phyra77739;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 275961 277385 . + . ID=Phyra94900;biotype=protein_coding;external_name=C_scaffold_26000032;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 275961 277385 . + . ID=Phyra94900;Parent=Phyra94900;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 275961 277385 . + 0 ID=Phyra94900;Parent=Phyra94900;rank=1 scaffold_26 . exon 275961 277385 . + . ID=Phyra94900.1;Parent=Phyra94900;constitutive=1;rank=1 scaffold_26 . biological_region 278903 278904 0.999 - . logic_name=eponine scaffold_26 . biological_region 280775 280783 0.999 + . logic_name=eponine scaffold_26 . biological_region 280792 280795 0.999 - . logic_name=eponine scaffold_26 . biological_region 281769 281769 0.999 - . logic_name=eponine scaffold_26 . biological_region 281812 281819 0.999 - . logic_name=eponine scaffold_26 . biological_region 281823 281825 0.999 + . logic_name=eponine scaffold_26 . biological_region 281837 281838 0.999 - . logic_name=eponine scaffold_26 . biological_region 281844 281848 0.999 + . logic_name=eponine scaffold_26 . biological_region 281869 281873 0.999 + . logic_name=eponine scaffold_26 . biological_region 281896 281896 0.999 - . logic_name=eponine scaffold_26 . biological_region 286094 286098 0.999 + . logic_name=eponine scaffold_26 . biological_region 287117 287119 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 277789 279225 . - . ID=Phyra77741;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000084;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 277789 279225 . - . ID=Phyra77741;Parent=Phyra77741;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 277789 279225 . - 0 ID=Phyra77741;Parent=Phyra77741;rank=1 scaffold_26 . exon 277789 279225 . - . ID=Phyra77741.1;Parent=Phyra77741;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 280693 282288 . - . ID=Phyra77742;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000085;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 280693 282288 . - . ID=Phyra77742;Parent=Phyra77742;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 280693 282288 . - 0 ID=Phyra77742;Parent=Phyra77742;rank=1 scaffold_26 . exon 280693 282288 . - . ID=Phyra77742.1;Parent=Phyra77742;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 283386 283811 . - . ID=Phyra77743;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000086;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 283386 283811 . - . ID=Phyra77743;Parent=Phyra77743;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 283386 283811 . - 0 ID=Phyra77743;Parent=Phyra77743;rank=1 scaffold_26 . exon 283386 283811 . - . ID=Phyra77743.1;Parent=Phyra77743;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 285596 287278 . + . ID=Phyra77744;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000087;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 285596 287278 . + . ID=Phyra77744;Parent=Phyra77744;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 285596 286869 . + 0 ID=Phyra77744;Parent=Phyra77744;rank=1 scaffold_26 . exon 285596 286869 . + . ID=Phyra77744.1;Parent=Phyra77744;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 286909 287278 . + 0 ID=Phyra77744;Parent=Phyra77744;rank=2 scaffold_26 . exon 286909 287278 . + . ID=Phyra77744.2;Parent=Phyra77744;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . repeat_region 287777 287786 . ? . description=dust scaffold_26 ensembl pseudogene 291026 292074 . + . ID=Phyra45799;biotype=pseudogene;external_name=gwEuk.26.31.1;logic_name=jgi_phyra1 scaffold_26 ensembl pseudogene 291026 292074 . + . ID=Phyra45799;Parent=Phyra45799;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_26 . exon 291026 292074 . + . ID=Phyra45799.1;Parent=Phyra45799;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 288352 289206 . + . ID=Phyra77745;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000088;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 288352 289206 . + . ID=Phyra77745;Parent=Phyra77745;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 288352 289206 . + 0 ID=Phyra77745;Parent=Phyra77745;rank=1 scaffold_26 . exon 288352 289206 . + . ID=Phyra77745.1;Parent=Phyra77745;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 292129 292965 . - . ID=Phyra77746;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000089;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 292129 292965 . - . ID=Phyra77746;Parent=Phyra77746;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 292129 292965 . - 0 ID=Phyra77746;Parent=Phyra77746;rank=1 scaffold_26 . exon 292129 292965 . - . ID=Phyra77746.1;Parent=Phyra77746;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 297415 299749 . + . ID=Phyra94902;biotype=protein_coding;external_name=C_scaffold_26000034;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 297415 299749 . + . ID=Phyra94902;Parent=Phyra94902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 297415 297463 . + 0 ID=Phyra94902;Parent=Phyra94902;rank=1 scaffold_26 . exon 297415 297463 . + . ID=Phyra94902.1;Parent=Phyra94902;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 297895 298347 . + 0 ID=Phyra94902;Parent=Phyra94902;rank=2 scaffold_26 . CDS 298403 298572 . + 0 ID=Phyra94902;Parent=Phyra94902;rank=3 scaffold_26 . CDS 299164 299286 . + 0 ID=Phyra94902;Parent=Phyra94902;rank=4 scaffold_26 . CDS 299374 299528 . + 0 ID=Phyra94902;Parent=Phyra94902;rank=5 scaffold_26 . CDS 299698 299749 . + 0 ID=Phyra94902;Parent=Phyra94902;rank=6 scaffold_26 . repeat_region 298962 299025 . ? . description=trf scaffold_26 . repeat_region 299563 299636 . ? . description=trf scaffold_26 . repeat_region 299563 299636 . ? . description=trf scaffold_26 . repeat_region 299573 299643 . ? . description=trf scaffold_26 . repeat_region 300384 300466 . ? . description=trf scaffold_26 . repeat_region 300388 300457 . ? . description=trf scaffold_26 . repeat_region 300400 300462 . ? . description=trf scaffold_26 ensembl protein_coding_gene 300122 301571 . - . ID=Phyra77748;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000091;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 300122 301571 . - . ID=Phyra77748;Parent=Phyra77748;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 300122 301125 . - 0 ID=Phyra77748;Parent=Phyra77748;rank=3 scaffold_26 . exon 300122 301125 . - . ID=Phyra77748.3;Parent=Phyra77748;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 301194 301354 . - 0 ID=Phyra77748;Parent=Phyra77748;rank=2 scaffold_26 . exon 301194 301354 . - . ID=Phyra77748.2;Parent=Phyra77748;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 301459 301571 . - 0 ID=Phyra77748;Parent=Phyra77748;rank=1 scaffold_26 . exon 301459 301571 . - . ID=Phyra77748.1;Parent=Phyra77748;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . exon 297895 298347 . + . ID=Phyra94902.2;Parent=Phyra94902;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_26 . exon 298403 298572 . + . ID=Phyra94902.3;Parent=Phyra94902;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 . exon 299164 299286 . + . ID=Phyra94902.4;Parent=Phyra94902;constitutive=1;rank=4 scaffold_26 . exon 299374 299528 . + . ID=Phyra94902.5;Parent=Phyra94902;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_26 . exon 299698 299749 . + . ID=Phyra94902.6;Parent=Phyra94902;constitutive=1;ensembl_phase=2;rank=6 scaffold_26 ensembl protein_coding_gene 301710 304521 . + . ID=Phyra94906;biotype=protein_coding;external_name=C_scaffold_26000038;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 301710 304521 . + . ID=Phyra94906;Parent=Phyra94906;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 301710 301776 . + 0 ID=Phyra94906;Parent=Phyra94906;rank=1 scaffold_26 . exon 301710 301776 . + . ID=Phyra94906.1;Parent=Phyra94906;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 301927 302550 . + 0 ID=Phyra94906;Parent=Phyra94906;rank=2 scaffold_26 . exon 301927 302550 . + . ID=Phyra94906.2;Parent=Phyra94906;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 302819 302962 . + 0 ID=Phyra94906;Parent=Phyra94906;rank=3 scaffold_26 . exon 302819 302962 . + . ID=Phyra94906.3;Parent=Phyra94906;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 303027 303116 . + 0 ID=Phyra94906;Parent=Phyra94906;rank=4 scaffold_26 . exon 303027 303116 . + . ID=Phyra94906.4;Parent=Phyra94906;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_26 . CDS 303362 303724 . + 0 ID=Phyra94906;Parent=Phyra94906;rank=5 scaffold_26 . exon 303362 303724 . + . ID=Phyra94906.5;Parent=Phyra94906;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_26 . CDS 303977 304063 . + 0 ID=Phyra94906;Parent=Phyra94906;rank=6 scaffold_26 . exon 303977 304063 . + . ID=Phyra94906.6;Parent=Phyra94906;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_26 . CDS 304259 304521 . + 0 ID=Phyra94906;Parent=Phyra94906;rank=7 scaffold_26 . exon 304259 304521 . + . ID=Phyra94906.7;Parent=Phyra94906;constitutive=1;ensembl_phase=1;rank=7 scaffold_26 . biological_region 312361 312363 0.999 + . logic_name=eponine scaffold_26 ensembl protein_coding_gene 309069 310706 . - . ID=Phyra77750;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000093;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 309069 310706 . - . ID=Phyra77750;Parent=Phyra77750;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 309069 310706 . - 0 ID=Phyra77750;Parent=Phyra77750;rank=1 scaffold_26 . exon 309069 310706 . - . ID=Phyra77750.1;Parent=Phyra77750;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 311065 311985 . - . ID=Phyra77751;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000094;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 311065 311985 . - . ID=Phyra77751;Parent=Phyra77751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 311065 311985 . - 0 ID=Phyra77751;Parent=Phyra77751;rank=1 scaffold_26 . exon 311065 311985 . - . ID=Phyra77751.1;Parent=Phyra77751;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 312351 314515 . + . ID=Phyra77752;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000095;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 312351 314515 . + . ID=Phyra77752;Parent=Phyra77752;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 312351 314483 . + 0 ID=Phyra77752;Parent=Phyra77752;rank=1 scaffold_26 . exon 312351 314483 . + . ID=Phyra77752.1;Parent=Phyra77752;constitutive=1;rank=1 scaffold_26 . CDS 314510 314515 . + 0 ID=Phyra77752;Parent=Phyra77752;rank=2 scaffold_26 . exon 314510 314515 . + . ID=Phyra77752.2;Parent=Phyra77752;constitutive=1;rank=2 scaffold_26 ensembl protein_coding_gene 314893 320161 . - . ID=Phyra77753;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000096;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 314893 320161 . - . ID=Phyra77753;Parent=Phyra77753;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 314893 319267 . - 0 ID=Phyra77753;Parent=Phyra77753;rank=3 scaffold_26 . exon 314893 319267 . - . ID=Phyra77753.3;Parent=Phyra77753;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 319344 319732 . - 0 ID=Phyra77753;Parent=Phyra77753;rank=2 scaffold_26 . CDS 319799 320161 . - 0 ID=Phyra77753;Parent=Phyra77753;rank=1 scaffold_26 . repeat_region 324420 324439 . ? . description=trf scaffold_26 . repeat_region 324547 324571 . ? . description=trf scaffold_26 ensembl protein_coding_gene 325459 325941 . + . ID=Phyra71550;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_26000007;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 325459 325941 . + . ID=Phyra71550;Parent=Phyra71550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 325459 325941 . + 0 ID=Phyra71550;Parent=Phyra71550;rank=1 scaffold_26 . exon 325459 325941 . + . ID=Phyra71550.1;Parent=Phyra71550;constitutive=1;rank=1 scaffold_26 . exon 319344 319732 . - . ID=Phyra77753.2;Parent=Phyra77753;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_26 . exon 319799 320161 . - . ID=Phyra77753.1;Parent=Phyra77753;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 320701 323076 . + . ID=Phyra77754;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000097;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 320701 323076 . + . ID=Phyra77754;Parent=Phyra77754;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 320701 321279 . + 0 ID=Phyra77754;Parent=Phyra77754;rank=1 scaffold_26 . exon 320701 321279 . + . ID=Phyra77754.1;Parent=Phyra77754;constitutive=1;rank=1 scaffold_26 . CDS 321364 321455 . + 0 ID=Phyra77754;Parent=Phyra77754;rank=2 scaffold_26 . exon 321364 321455 . + . ID=Phyra77754.2;Parent=Phyra77754;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_26 . CDS 321531 323076 . + 0 ID=Phyra77754;Parent=Phyra77754;rank=3 scaffold_26 . exon 321531 323076 . + . ID=Phyra77754.3;Parent=Phyra77754;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 ensembl protein_coding_gene 323198 324850 . - . ID=Phyra77755;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000098;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 323198 324850 . - . ID=Phyra77755;Parent=Phyra77755;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 323198 324850 . - 0 ID=Phyra77755;Parent=Phyra77755;rank=1 scaffold_26 . exon 323198 324850 . - . ID=Phyra77755.1;Parent=Phyra77755;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 326301 328661 . + . ID=Phyra77757;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000100;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 326301 328661 . + . ID=Phyra77757;Parent=Phyra77757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 326301 326345 . + 0 ID=Phyra77757;Parent=Phyra77757;rank=1 scaffold_26 . exon 326301 326345 . + . ID=Phyra77757.1;Parent=Phyra77757;constitutive=1;rank=1 scaffold_26 . CDS 326443 326641 . + 0 ID=Phyra77757;Parent=Phyra77757;rank=2 scaffold_26 . exon 326443 326641 . + . ID=Phyra77757.2;Parent=Phyra77757;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_26 . CDS 326725 326792 . + 0 ID=Phyra77757;Parent=Phyra77757;rank=3 scaffold_26 . exon 326725 326792 . + . ID=Phyra77757.3;Parent=Phyra77757;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 326865 326930 . + 0 ID=Phyra77757;Parent=Phyra77757;rank=4 scaffold_26 . exon 326865 326930 . + . ID=Phyra77757.4;Parent=Phyra77757;constitutive=1;rank=4 scaffold_26 . CDS 327000 327083 . + 0 ID=Phyra77757;Parent=Phyra77757;rank=5 scaffold_26 . exon 327000 327083 . + . ID=Phyra77757.5;Parent=Phyra77757;constitutive=1;rank=5 scaffold_26 . CDS 327158 327337 . + 0 ID=Phyra77757;Parent=Phyra77757;rank=6 scaffold_26 . exon 327158 327337 . + . ID=Phyra77757.6;Parent=Phyra77757;constitutive=1;rank=6 scaffold_26 . CDS 327404 327842 . + 0 ID=Phyra77757;Parent=Phyra77757;rank=7 scaffold_26 . CDS 327946 328661 . + 0 ID=Phyra77757;Parent=Phyra77757;rank=8 scaffold_26 . repeat_region 332420 332428 . ? . description=dust scaffold_26 . biological_region 334294 334296 0.999 - . logic_name=eponine scaffold_26 . biological_region 337035 337037 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 328704 329513 . - . ID=Phyra45814;biotype=protein_coding;external_name=gwEuk.26.46.1;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 328704 329513 . - . ID=Phyra45814;Parent=Phyra45814;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 328704 328772 . - 0 ID=Phyra45814;Parent=Phyra45814;rank=3 scaffold_26 . exon 328704 328772 . - . ID=Phyra45814.3;Parent=Phyra45814;constitutive=1;rank=3 scaffold_26 . CDS 328851 329312 . - 0 ID=Phyra45814;Parent=Phyra45814;rank=2 scaffold_26 . exon 328851 329312 . - . ID=Phyra45814.2;Parent=Phyra45814;constitutive=1;rank=2 scaffold_26 . CDS 329382 329513 . - 0 ID=Phyra45814;Parent=Phyra45814;rank=1 scaffold_26 . exon 329382 329513 . - . ID=Phyra45814.1;Parent=Phyra45814;constitutive=1;rank=1 scaffold_26 . exon 327404 327842 . + . ID=Phyra77757.7;Parent=Phyra77757;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_26 . exon 327946 328661 . + . ID=Phyra77757.8;Parent=Phyra77757;constitutive=1;ensembl_phase=1;rank=8 scaffold_26 ensembl protein_coding_gene 329928 330734 . - . ID=Phyra77759;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000102;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 329928 330734 . - . ID=Phyra77759;Parent=Phyra77759;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 329928 330734 . - 0 ID=Phyra77759;Parent=Phyra77759;rank=1 scaffold_26 . exon 329928 330734 . - . ID=Phyra77759.1;Parent=Phyra77759;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 332598 334622 . - . ID=Phyra77761;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000104;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 332598 334622 . - . ID=Phyra77761;Parent=Phyra77761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 332598 334622 . - 0 ID=Phyra77761;Parent=Phyra77761;rank=1 scaffold_26 . exon 332598 334622 . - . ID=Phyra77761.1;Parent=Phyra77761;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 331154 332293 . + . ID=Phyra94911;biotype=protein_coding;external_name=C_scaffold_26000043;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 331154 332293 . + . ID=Phyra94911;Parent=Phyra94911;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 331154 332293 . + 0 ID=Phyra94911;Parent=Phyra94911;rank=1 scaffold_26 . exon 331154 332293 . + . ID=Phyra94911.1;Parent=Phyra94911;constitutive=1;rank=1 scaffold_26 . repeat_region 339328 339347 . ? . description=trf scaffold_26 . repeat_region 346672 346694 . ? . description=trf scaffold_26 ensembl protein_coding_gene 346458 346916 . - . ID=Phyra77763;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000106;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 346458 346916 . - . ID=Phyra77763;Parent=Phyra77763;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 346458 346916 . - 0 ID=Phyra77763;Parent=Phyra77763;rank=1 scaffold_26 . exon 346458 346916 . - . ID=Phyra77763.1;Parent=Phyra77763;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 338075 339932 . - . ID=Phyra94912;biotype=protein_coding;external_name=C_scaffold_26000044;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 338075 339932 . - . ID=Phyra94912;Parent=Phyra94912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 338075 338351 . - 0 ID=Phyra94912;Parent=Phyra94912;rank=8 scaffold_26 . exon 338075 338351 . - . ID=Phyra94912.8;Parent=Phyra94912;constitutive=1;ensembl_phase=2;rank=8 scaffold_26 . CDS 338429 338518 . - 0 ID=Phyra94912;Parent=Phyra94912;rank=7 scaffold_26 . exon 338429 338518 . - . ID=Phyra94912.7;Parent=Phyra94912;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_26 . CDS 338600 338781 . - 0 ID=Phyra94912;Parent=Phyra94912;rank=6 scaffold_26 . exon 338600 338781 . - . ID=Phyra94912.6;Parent=Phyra94912;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_26 . CDS 338843 339019 . - 0 ID=Phyra94912;Parent=Phyra94912;rank=5 scaffold_26 . exon 338843 339019 . - . ID=Phyra94912.5;Parent=Phyra94912;constitutive=1;rank=5 scaffold_26 . CDS 339102 339172 . - 0 ID=Phyra94912;Parent=Phyra94912;rank=4 scaffold_26 . exon 339102 339172 . - . ID=Phyra94912.4;Parent=Phyra94912;constitutive=1;ensembl_phase=1;rank=4 scaffold_26 . CDS 339232 339507 . - 0 ID=Phyra94912;Parent=Phyra94912;rank=3 scaffold_26 . exon 339232 339507 . - . ID=Phyra94912.3;Parent=Phyra94912;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 339535 339733 . - 0 ID=Phyra94912;Parent=Phyra94912;rank=2 scaffold_26 . exon 339535 339733 . - . ID=Phyra94912.2;Parent=Phyra94912;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_26 . CDS 339801 339932 . - 0 ID=Phyra94912;Parent=Phyra94912;rank=1 scaffold_26 . exon 339801 339932 . - . ID=Phyra94912.1;Parent=Phyra94912;constitutive=1;rank=1 scaffold_26 . repeat_region 348777 348826 . ? . description=dust scaffold_26 . biological_region 351532 351533 0.999 + . logic_name=eponine scaffold_26 . repeat_region 354089 354138 . ? . description=dust scaffold_26 . biological_region 354465 354466 0.999 - . logic_name=eponine scaffold_26 . biological_region 354624 354625 0.999 + . logic_name=eponine scaffold_26 . repeat_region 355007 355056 . ? . description=dust scaffold_26 . repeat_region 356030 356079 . ? . description=dust scaffold_26 . repeat_region 356547 356580 . ? . description=dust scaffold_26 ensembl protein_coding_gene 349808 355324 . - . ID=Phyra77764;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000107;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 349808 355324 . - . ID=Phyra77764;Parent=Phyra77764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 349808 353996 . - 0 ID=Phyra77764;Parent=Phyra77764;rank=3 scaffold_26 . exon 349808 353996 . - . ID=Phyra77764.3;Parent=Phyra77764;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 354173 354945 . - 0 ID=Phyra77764;Parent=Phyra77764;rank=2 scaffold_26 . exon 354173 354945 . - . ID=Phyra77764.2;Parent=Phyra77764;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_26 . CDS 355100 355324 . - 0 ID=Phyra77764;Parent=Phyra77764;rank=1 scaffold_26 . exon 355100 355324 . - . ID=Phyra77764.1;Parent=Phyra77764;constitutive=1;rank=1 scaffold_26 . repeat_region 360177 360222 . ? . description=trf scaffold_26 . repeat_region 360918 361006 . ? . description=trf scaffold_26 ensembl protein_coding_gene 359307 359732 . - . ID=Phyra77765;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000108;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 359307 359732 . - . ID=Phyra77765;Parent=Phyra77765;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 359307 359732 . - 0 ID=Phyra77765;Parent=Phyra77765;rank=1 scaffold_26 . exon 359307 359732 . - . ID=Phyra77765.1;Parent=Phyra77765;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 366352 366890 . - . ID=Phyra77766;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000109;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 366352 366890 . - . ID=Phyra77766;Parent=Phyra77766;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 366352 366704 . - 0 ID=Phyra77766;Parent=Phyra77766;rank=2 scaffold_26 . exon 366352 366704 . - . ID=Phyra77766.2;Parent=Phyra77766;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 366758 366890 . - 0 ID=Phyra77766;Parent=Phyra77766;rank=1 scaffold_26 . exon 366758 366890 . - . ID=Phyra77766.1;Parent=Phyra77766;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . repeat_region 367797 367837 . ? . description=dust scaffold_26 . biological_region 372495 372501 0.999 - . logic_name=eponine scaffold_26 . repeat_region 374806 376690 . ? . description=dust scaffold_26 ensembl protein_coding_gene 370317 371295 . - . ID=Phyra77767;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000110;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 370317 371295 . - . ID=Phyra77767;Parent=Phyra77767;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 370317 370647 . - 0 ID=Phyra77767;Parent=Phyra77767;rank=3 scaffold_26 . exon 370317 370647 . - . ID=Phyra77767.3;Parent=Phyra77767;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 370713 370874 . - 0 ID=Phyra77767;Parent=Phyra77767;rank=2 scaffold_26 . exon 370713 370874 . - . ID=Phyra77767.2;Parent=Phyra77767;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_26 . CDS 370955 371295 . - 0 ID=Phyra77767;Parent=Phyra77767;rank=1 scaffold_26 . exon 370955 371295 . - . ID=Phyra77767.1;Parent=Phyra77767;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 371920 372827 . - . ID=Phyra77768;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000111;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 371920 372827 . - . ID=Phyra77768;Parent=Phyra77768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 371920 372634 . - 0 ID=Phyra77768;Parent=Phyra77768;rank=2 scaffold_26 . exon 371920 372634 . - . ID=Phyra77768.2;Parent=Phyra77768;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 372820 372827 . - 0 ID=Phyra77768;Parent=Phyra77768;rank=1 scaffold_26 . exon 372820 372827 . - . ID=Phyra77768.1;Parent=Phyra77768;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 377074 377612 . - . ID=Phyra77769;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000112;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 377074 377612 . - . ID=Phyra77769;Parent=Phyra77769;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 377074 377426 . - 0 ID=Phyra77769;Parent=Phyra77769;rank=2 scaffold_26 . exon 377074 377426 . - . ID=Phyra77769.2;Parent=Phyra77769;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 377480 377612 . - 0 ID=Phyra77769;Parent=Phyra77769;rank=1 scaffold_26 . exon 377480 377612 . - . ID=Phyra77769.1;Parent=Phyra77769;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 382288 383189 . - . ID=Phyra77770;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000113;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 382288 383189 . - . ID=Phyra77770;Parent=Phyra77770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 382288 382996 . - 0 ID=Phyra77770;Parent=Phyra77770;rank=2 scaffold_26 . exon 382288 382996 . - . ID=Phyra77770.2;Parent=Phyra77770;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 383182 383189 . - 0 ID=Phyra77770;Parent=Phyra77770;rank=1 scaffold_26 . exon 383182 383189 . - . ID=Phyra77770.1;Parent=Phyra77770;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 385945 386530 . - . ID=Phyra77772;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000115;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 385945 386530 . - . ID=Phyra77772;Parent=Phyra77772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 385945 385955 . - 0 ID=Phyra77772;Parent=Phyra77772;rank=2 scaffold_26 . exon 385945 385955 . - . ID=Phyra77772.2;Parent=Phyra77772;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 385975 386530 . - 0 ID=Phyra77772;Parent=Phyra77772;rank=1 scaffold_26 . exon 385975 386530 . - . ID=Phyra77772.1;Parent=Phyra77772;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 384097 385797 . + . ID=Phyra94913;biotype=protein_coding;external_name=C_scaffold_26000045;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 384097 385797 . + . ID=Phyra94913;Parent=Phyra94913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 384097 385797 . + 0 ID=Phyra94913;Parent=Phyra94913;rank=1 scaffold_26 . exon 384097 385797 . + . ID=Phyra94913.1;Parent=Phyra94913;constitutive=1;rank=1 scaffold_26 . biological_region 392727 392727 0.999 - . logic_name=eponine scaffold_26 . biological_region 392752 392752 0.999 - . logic_name=eponine scaffold_26 . biological_region 392895 392898 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 386680 387494 . + . ID=Phyra77773;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000116;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 386680 387494 . + . ID=Phyra77773;Parent=Phyra77773;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 386680 387274 . + 0 ID=Phyra77773;Parent=Phyra77773;rank=1 scaffold_26 . exon 386680 387274 . + . ID=Phyra77773.1;Parent=Phyra77773;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 387331 387494 . + 0 ID=Phyra77773;Parent=Phyra77773;rank=2 scaffold_26 . exon 387331 387494 . + . ID=Phyra77773.2;Parent=Phyra77773;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 ensembl protein_coding_gene 388970 389570 . - . ID=Phyra77774;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000117;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 388970 389570 . - . ID=Phyra77774;Parent=Phyra77774;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 388970 389002 . - 0 ID=Phyra77774;Parent=Phyra77774;rank=2 scaffold_26 . exon 388970 389002 . - . ID=Phyra77774.2;Parent=Phyra77774;constitutive=1;rank=2 scaffold_26 . CDS 389103 389570 . - 0 ID=Phyra77774;Parent=Phyra77774;rank=1 scaffold_26 . exon 389103 389570 . - . ID=Phyra77774.1;Parent=Phyra77774;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 389956 390662 . - . ID=Phyra77775;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000118;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 389956 390662 . - . ID=Phyra77775;Parent=Phyra77775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 389956 390060 . - 0 ID=Phyra77775;Parent=Phyra77775;rank=3 scaffold_26 . exon 389956 390060 . - . ID=Phyra77775.3;Parent=Phyra77775;constitutive=1;rank=3 scaffold_26 . CDS 390130 390361 . - 0 ID=Phyra77775;Parent=Phyra77775;rank=2 scaffold_26 . exon 390130 390361 . - . ID=Phyra77775.2;Parent=Phyra77775;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 390433 390662 . - 0 ID=Phyra77775;Parent=Phyra77775;rank=1 scaffold_26 . exon 390433 390662 . - . ID=Phyra77775.1;Parent=Phyra77775;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 391080 392483 . + . ID=Phyra77776;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000119;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 391080 392483 . + . ID=Phyra77776;Parent=Phyra77776;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 391080 391166 . + 0 ID=Phyra77776;Parent=Phyra77776;rank=1 scaffold_26 . exon 391080 391166 . + . ID=Phyra77776.1;Parent=Phyra77776;constitutive=1;rank=1 scaffold_26 . CDS 391452 391790 . + 0 ID=Phyra77776;Parent=Phyra77776;rank=2 scaffold_26 . exon 391452 391790 . + . ID=Phyra77776.2;Parent=Phyra77776;constitutive=1;rank=2 scaffold_26 . CDS 391921 392096 . + 0 ID=Phyra77776;Parent=Phyra77776;rank=3 scaffold_26 . exon 391921 392096 . + . ID=Phyra77776.3;Parent=Phyra77776;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_26 . CDS 392132 392483 . + 0 ID=Phyra77776;Parent=Phyra77776;rank=4 scaffold_26 . exon 392132 392483 . + . ID=Phyra77776.4;Parent=Phyra77776;constitutive=1;ensembl_phase=2;rank=4 scaffold_26 ensembl protein_coding_gene 392648 396625 . + . ID=Phyra77777;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000120;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 392648 396625 . + . ID=Phyra77777;Parent=Phyra77777;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 392648 396625 . + 0 ID=Phyra77777;Parent=Phyra77777;rank=1 scaffold_26 . exon 392648 396625 . + . ID=Phyra77777.1;Parent=Phyra77777;constitutive=1;rank=1 scaffold_26 . repeat_region 402060 402070 . ? . description=dust scaffold_26 . repeat_region 403635 403642 . ? . description=dust scaffold_26 ensembl protein_coding_gene 396719 397812 . - . ID=Phyra77778;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000121;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 396719 397812 . - . ID=Phyra77778;Parent=Phyra77778;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 396719 397439 . - 0 ID=Phyra77778;Parent=Phyra77778;rank=2 scaffold_26 . exon 396719 397439 . - . ID=Phyra77778.2;Parent=Phyra77778;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 397706 397812 . - 0 ID=Phyra77778;Parent=Phyra77778;rank=1 scaffold_26 . exon 397706 397812 . - . ID=Phyra77778.1;Parent=Phyra77778;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 400447 401560 . - . ID=Phyra77779;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000122;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 400447 401560 . - . ID=Phyra77779;Parent=Phyra77779;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 400447 400560 . - 0 ID=Phyra77779;Parent=Phyra77779;rank=2 scaffold_26 . exon 400447 400560 . - . ID=Phyra77779.2;Parent=Phyra77779;constitutive=1;rank=2 scaffold_26 . CDS 400640 401560 . - 0 ID=Phyra77779;Parent=Phyra77779;rank=1 scaffold_26 . exon 400640 401560 . - . ID=Phyra77779.1;Parent=Phyra77779;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 402120 403963 . + . ID=Phyra77780;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000123;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 402120 403963 . + . ID=Phyra77780;Parent=Phyra77780;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 402120 402321 . + 0 ID=Phyra77780;Parent=Phyra77780;rank=1 scaffold_26 . exon 402120 402321 . + . ID=Phyra77780.1;Parent=Phyra77780;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 402397 402502 . + 0 ID=Phyra77780;Parent=Phyra77780;rank=2 scaffold_26 . exon 402397 402502 . + . ID=Phyra77780.2;Parent=Phyra77780;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . CDS 402577 402898 . + 0 ID=Phyra77780;Parent=Phyra77780;rank=3 scaffold_26 . exon 402577 402898 . + . ID=Phyra77780.3;Parent=Phyra77780;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 402980 403123 . + 0 ID=Phyra77780;Parent=Phyra77780;rank=4 scaffold_26 . exon 402980 403123 . + . ID=Phyra77780.4;Parent=Phyra77780;constitutive=1;rank=4 scaffold_26 . CDS 403254 403278 . + 0 ID=Phyra77780;Parent=Phyra77780;rank=5 scaffold_26 . exon 403254 403278 . + . ID=Phyra77780.5;Parent=Phyra77780;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_26 . CDS 403389 403437 . + 0 ID=Phyra77780;Parent=Phyra77780;rank=6 scaffold_26 . exon 403389 403437 . + . ID=Phyra77780.6;Parent=Phyra77780;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_26 . CDS 403518 403610 . + 0 ID=Phyra77780;Parent=Phyra77780;rank=7 scaffold_26 . exon 403518 403610 . + . ID=Phyra77780.7;Parent=Phyra77780;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_26 . CDS 403681 403742 . + 0 ID=Phyra77780;Parent=Phyra77780;rank=8 scaffold_26 . exon 403681 403742 . + . ID=Phyra77780.8;Parent=Phyra77780;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_26 . CDS 403818 403963 . + 0 ID=Phyra77780;Parent=Phyra77780;rank=9 scaffold_26 . exon 403818 403963 . + . ID=Phyra77780.9;Parent=Phyra77780;constitutive=1;ensembl_phase=1;rank=9 scaffold_26 ensembl protein_coding_gene 404444 409129 . + . ID=Phyra77781;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000124;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 404444 409129 . + . ID=Phyra77781;Parent=Phyra77781;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 404444 409129 . + 0 ID=Phyra77781;Parent=Phyra77781;rank=1 scaffold_26 . exon 404444 409129 . + . ID=Phyra77781.1;Parent=Phyra77781;constitutive=1;rank=1 scaffold_26 . biological_region 415776 415781 0.999 + . logic_name=eponine scaffold_26 ensembl protein_coding_gene 409263 409724 . - . ID=Phyra45820;biotype=protein_coding;external_name=gwEuk.26.52.1;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 409263 409724 . - . ID=Phyra45820;Parent=Phyra45820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 409263 409724 . - 0 ID=Phyra45820;Parent=Phyra45820;rank=1 scaffold_26 . exon 409263 409724 . - . ID=Phyra45820.1;Parent=Phyra45820;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 410070 410719 . - . ID=Phyra45825;biotype=protein_coding;external_name=gwEuk.26.57.1;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 410070 410719 . - . ID=Phyra45825;Parent=Phyra45825;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 410070 410170 . - 0 ID=Phyra45825;Parent=Phyra45825;rank=4 scaffold_26 . exon 410070 410170 . - . ID=Phyra45825.4;Parent=Phyra45825;constitutive=1;ensembl_phase=1;rank=4 scaffold_26 . CDS 410257 410405 . - 0 ID=Phyra45825;Parent=Phyra45825;rank=3 scaffold_26 . exon 410257 410405 . - . ID=Phyra45825.3;Parent=Phyra45825;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 410485 410604 . - 0 ID=Phyra45825;Parent=Phyra45825;rank=2 scaffold_26 . exon 410485 410604 . - . ID=Phyra45825.2;Parent=Phyra45825;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_26 . CDS 410679 410719 . - 0 ID=Phyra45825;Parent=Phyra45825;rank=1 scaffold_26 . exon 410679 410719 . - . ID=Phyra45825.1;Parent=Phyra45825;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 415298 416359 . + . ID=Phyra71551;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_26000008;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 415298 416359 . + . ID=Phyra71551;Parent=Phyra71551;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 415298 416359 . + 0 ID=Phyra71551;Parent=Phyra71551;rank=1 scaffold_26 . exon 415298 416359 . + . ID=Phyra71551.1;Parent=Phyra71551;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 411748 413117 . + . ID=Phyra94923;biotype=protein_coding;external_name=C_scaffold_26000055;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 411748 413117 . + . ID=Phyra94923;Parent=Phyra94923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 411748 411808 . + 0 ID=Phyra94923;Parent=Phyra94923;rank=1 scaffold_26 . exon 411748 411808 . + . ID=Phyra94923.1;Parent=Phyra94923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 411882 411903 . + 0 ID=Phyra94923;Parent=Phyra94923;rank=2 scaffold_26 . exon 411882 411903 . + . ID=Phyra94923.2;Parent=Phyra94923;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . CDS 412003 412039 . + 0 ID=Phyra94923;Parent=Phyra94923;rank=3 scaffold_26 . exon 412003 412039 . + . ID=Phyra94923.3;Parent=Phyra94923;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 412139 412162 . + 0 ID=Phyra94923;Parent=Phyra94923;rank=4 scaffold_26 . exon 412139 412162 . + . ID=Phyra94923.4;Parent=Phyra94923;constitutive=1;rank=4 scaffold_26 . CDS 412236 412313 . + 0 ID=Phyra94923;Parent=Phyra94923;rank=5 scaffold_26 . exon 412236 412313 . + . ID=Phyra94923.5;Parent=Phyra94923;constitutive=1;rank=5 scaffold_26 . CDS 412383 412728 . + 0 ID=Phyra94923;Parent=Phyra94923;rank=6 scaffold_26 . exon 412383 412728 . + . ID=Phyra94923.6;Parent=Phyra94923;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_26 . CDS 412807 412983 . + 0 ID=Phyra94923;Parent=Phyra94923;rank=7 scaffold_26 . exon 412807 412983 . + . ID=Phyra94923.7;Parent=Phyra94923;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_26 . CDS 413074 413117 . + 0 ID=Phyra94923;Parent=Phyra94923;rank=8 scaffold_26 . exon 413074 413117 . + . ID=Phyra94923.8;Parent=Phyra94923;constitutive=1;ensembl_phase=1;rank=8 scaffold_26 . repeat_region 418881 418888 . ? . description=dust scaffold_26 . repeat_region 420615 420655 . ? . description=trf scaffold_26 . repeat_region 421630 422355 . ? . description=trf scaffold_26 ensembl protein_coding_gene 422445 422888 . - . ID=Phyra71552;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_26000009;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 422445 422888 . - . ID=Phyra71552;Parent=Phyra71552;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 422445 422888 . - 0 ID=Phyra71552;Parent=Phyra71552;rank=1 scaffold_26 . exon 422445 422888 . - . ID=Phyra71552.1;Parent=Phyra71552;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 416855 417951 . + . ID=Phyra77785;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000128;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 416855 417951 . + . ID=Phyra77785;Parent=Phyra77785;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 416855 417324 . + 0 ID=Phyra77785;Parent=Phyra77785;rank=1 scaffold_26 . exon 416855 417324 . + . ID=Phyra77785.1;Parent=Phyra77785;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 417405 417566 . + 0 ID=Phyra77785;Parent=Phyra77785;rank=2 scaffold_26 . exon 417405 417566 . + . ID=Phyra77785.2;Parent=Phyra77785;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_26 . CDS 417648 417951 . + 0 ID=Phyra77785;Parent=Phyra77785;rank=3 scaffold_26 . exon 417648 417951 . + . ID=Phyra77785.3;Parent=Phyra77785;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 ensembl protein_coding_gene 420513 420986 . + . ID=Phyra77786;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000129;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 420513 420986 . + . ID=Phyra77786;Parent=Phyra77786;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 420513 420986 . + 0 ID=Phyra77786;Parent=Phyra77786;rank=1 scaffold_26 . exon 420513 420986 . + . ID=Phyra77786.1;Parent=Phyra77786;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 423060 423374 . - . ID=Phyra77788;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000131;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 423060 423374 . - . ID=Phyra77788;Parent=Phyra77788;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 423060 423374 . - 0 ID=Phyra77788;Parent=Phyra77788;rank=1 scaffold_26 . exon 423060 423374 . - . ID=Phyra77788.1;Parent=Phyra77788;constitutive=1;rank=1 scaffold_26 . biological_region 430678 430683 0.999 - . logic_name=eponine scaffold_26 . biological_region 431777 431788 0.999 + . logic_name=eponine scaffold_26 . biological_region 431781 431784 0.999 - . logic_name=eponine scaffold_26 . biological_region 433624 433629 0.999 + . logic_name=eponine scaffold_26 . biological_region 434821 434822 0.999 + . logic_name=eponine scaffold_26 . biological_region 434849 434851 0.999 - . logic_name=eponine scaffold_26 . biological_region 434865 434873 0.999 - . logic_name=eponine scaffold_26 . biological_region 434921 434925 0.999 - . logic_name=eponine scaffold_26 . biological_region 434925 434925 0.999 + . logic_name=eponine scaffold_26 ensembl protein_coding_gene 430099 431160 . - . ID=Phyra71553;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_26000010;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 430099 431160 . - . ID=Phyra71553;Parent=Phyra71553;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 430099 431160 . - 0 ID=Phyra71553;Parent=Phyra71553;rank=1 scaffold_26 . exon 430099 431160 . - . ID=Phyra71553.1;Parent=Phyra71553;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 428419 428742 . + . ID=Phyra77789;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000132;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 428419 428742 . + . ID=Phyra77789;Parent=Phyra77789;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 428419 428742 . + 0 ID=Phyra77789;Parent=Phyra77789;rank=1 scaffold_26 . exon 428419 428742 . + . ID=Phyra77789.1;Parent=Phyra77789;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 433552 434406 . + . ID=Phyra77792;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000135;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 433552 434406 . + . ID=Phyra77792;Parent=Phyra77792;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 433552 433947 . + 0 ID=Phyra77792;Parent=Phyra77792;rank=1 scaffold_26 . exon 433552 433947 . + . ID=Phyra77792.1;Parent=Phyra77792;constitutive=1;rank=1 scaffold_26 . CDS 434020 434406 . + 0 ID=Phyra77792;Parent=Phyra77792;rank=2 scaffold_26 . exon 434020 434406 . + . ID=Phyra77792.2;Parent=Phyra77792;constitutive=1;rank=2 scaffold_26 ensembl protein_coding_gene 434535 435689 . + . ID=Phyra77793;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000136;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 434535 435689 . + . ID=Phyra77793;Parent=Phyra77793;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 434535 435689 . + 0 ID=Phyra77793;Parent=Phyra77793;rank=1 scaffold_26 . exon 434535 435689 . + . ID=Phyra77793.1;Parent=Phyra77793;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 435819 438585 . - . ID=Phyra77794;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000137;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 435819 438585 . - . ID=Phyra77794;Parent=Phyra77794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 435819 437399 . - 0 ID=Phyra77794;Parent=Phyra77794;rank=2 scaffold_26 . exon 435819 437399 . - . ID=Phyra77794.2;Parent=Phyra77794;constitutive=1;rank=2 scaffold_26 . CDS 437470 438585 . - 0 ID=Phyra77794;Parent=Phyra77794;rank=1 scaffold_26 ensembl protein_coding_gene 429256 429474 . - . ID=Phyra94924;biotype=protein_coding;external_name=C_scaffold_26000056;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 429256 429474 . - . ID=Phyra94924;Parent=Phyra94924;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 429256 429474 . - 0 ID=Phyra94924;Parent=Phyra94924;rank=1 scaffold_26 . exon 429256 429474 . - . ID=Phyra94924.1;Parent=Phyra94924;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 431688 433254 . + . ID=Phyra94925;biotype=protein_coding;external_name=C_scaffold_26000057;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 431688 433254 . + . ID=Phyra94925;Parent=Phyra94925;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 431688 432938 . + 0 ID=Phyra94925;Parent=Phyra94925;rank=1 scaffold_26 . exon 431688 432938 . + . ID=Phyra94925.1;Parent=Phyra94925;constitutive=1;rank=1 scaffold_26 . CDS 433012 433254 . + 0 ID=Phyra94925;Parent=Phyra94925;rank=2 scaffold_26 . exon 433012 433254 . + . ID=Phyra94925.2;Parent=Phyra94925;constitutive=1;rank=2 scaffold_26 . repeat_region 443406 443430 . ? . description=trf scaffold_26 . exon 437470 438585 . - . ID=Phyra77794.1;Parent=Phyra77794;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 439260 440657 . + . ID=Phyra77795;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000138;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 439260 440657 . + . ID=Phyra77795;Parent=Phyra77795;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 439260 440657 . + 0 ID=Phyra77795;Parent=Phyra77795;rank=1 scaffold_26 . exon 439260 440657 . + . ID=Phyra77795.1;Parent=Phyra77795;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 442413 446843 . + . ID=Phyra77796;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000139;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 442413 446843 . + . ID=Phyra77796;Parent=Phyra77796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 442413 442933 . + 0 ID=Phyra77796;Parent=Phyra77796;rank=1 scaffold_26 . exon 442413 442933 . + . ID=Phyra77796.1;Parent=Phyra77796;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 442994 443050 . + 0 ID=Phyra77796;Parent=Phyra77796;rank=2 scaffold_26 . exon 442994 443050 . + . ID=Phyra77796.2;Parent=Phyra77796;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_26 . CDS 443121 443540 . + 0 ID=Phyra77796;Parent=Phyra77796;rank=3 scaffold_26 . exon 443121 443540 . + . ID=Phyra77796.3;Parent=Phyra77796;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_26 . CDS 443624 443830 . + 0 ID=Phyra77796;Parent=Phyra77796;rank=4 scaffold_26 . exon 443624 443830 . + . ID=Phyra77796.4;Parent=Phyra77796;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_26 . CDS 443907 446694 . + 0 ID=Phyra77796;Parent=Phyra77796;rank=5 scaffold_26 . exon 443907 446694 . + . ID=Phyra77796.5;Parent=Phyra77796;constitutive=1;ensembl_phase=2;rank=5 scaffold_26 . CDS 446769 446843 . + 0 ID=Phyra77796;Parent=Phyra77796;rank=6 scaffold_26 . biological_region 454155 454159 0.999 + . logic_name=eponine scaffold_26 . biological_region 454865 454868 0.999 + . logic_name=eponine scaffold_26 . exon 446769 446843 . + . ID=Phyra77796.6;Parent=Phyra77796;constitutive=1;rank=6 scaffold_26 ensembl protein_coding_gene 451264 452161 . + . ID=Phyra77798;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000141;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 451264 452161 . + . ID=Phyra77798;Parent=Phyra77798;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 451264 451372 . + 0 ID=Phyra77798;Parent=Phyra77798;rank=1 scaffold_26 . exon 451264 451372 . + . ID=Phyra77798.1;Parent=Phyra77798;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 451465 451525 . + 0 ID=Phyra77798;Parent=Phyra77798;rank=2 scaffold_26 . exon 451465 451525 . + . ID=Phyra77798.2;Parent=Phyra77798;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . CDS 451592 451791 . + 0 ID=Phyra77798;Parent=Phyra77798;rank=3 scaffold_26 . exon 451592 451791 . + . ID=Phyra77798.3;Parent=Phyra77798;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 451869 452161 . + 0 ID=Phyra77798;Parent=Phyra77798;rank=4 scaffold_26 . exon 451869 452161 . + . ID=Phyra77798.4;Parent=Phyra77798;constitutive=1;ensembl_phase=1;rank=4 scaffold_26 ensembl protein_coding_gene 446937 451119 . - . ID=Phyra94933;biotype=protein_coding;external_name=C_scaffold_26000065;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 446937 451119 . - . ID=Phyra94933;Parent=Phyra94933;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 446937 447112 . - 0 ID=Phyra94933;Parent=Phyra94933;rank=6 scaffold_26 . exon 446937 447112 . - . ID=Phyra94933.6;Parent=Phyra94933;constitutive=1;ensembl_phase=1;rank=6 scaffold_26 . CDS 447180 448863 . - 0 ID=Phyra94933;Parent=Phyra94933;rank=5 scaffold_26 . exon 447180 448863 . - . ID=Phyra94933.5;Parent=Phyra94933;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_26 . CDS 449047 449216 . - 0 ID=Phyra94933;Parent=Phyra94933;rank=4 scaffold_26 . exon 449047 449216 . - . ID=Phyra94933.4;Parent=Phyra94933;constitutive=1;ensembl_phase=1;rank=4 scaffold_26 . CDS 449334 449413 . - 0 ID=Phyra94933;Parent=Phyra94933;rank=3 scaffold_26 . exon 449334 449413 . - . ID=Phyra94933.3;Parent=Phyra94933;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 449576 450868 . - 0 ID=Phyra94933;Parent=Phyra94933;rank=2 scaffold_26 . exon 449576 450868 . - . ID=Phyra94933.2;Parent=Phyra94933;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_26 . CDS 450911 451119 . - 0 ID=Phyra94933;Parent=Phyra94933;rank=1 scaffold_26 . exon 450911 451119 . - . ID=Phyra94933.1;Parent=Phyra94933;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 452277 453178 . - . ID=Phyra94936;biotype=protein_coding;external_name=C_scaffold_26000068;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 452277 453178 . - . ID=Phyra94936;Parent=Phyra94936;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 452277 452572 . - 0 ID=Phyra94936;Parent=Phyra94936;rank=4 scaffold_26 . exon 452277 452572 . - . ID=Phyra94936.4;Parent=Phyra94936;constitutive=1;ensembl_phase=1;rank=4 scaffold_26 . CDS 452654 452844 . - 0 ID=Phyra94936;Parent=Phyra94936;rank=3 scaffold_26 . exon 452654 452844 . - . ID=Phyra94936.3;Parent=Phyra94936;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 452918 452984 . - 0 ID=Phyra94936;Parent=Phyra94936;rank=2 scaffold_26 . exon 452918 452984 . - . ID=Phyra94936.2;Parent=Phyra94936;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . CDS 453070 453178 . - 0 ID=Phyra94936;Parent=Phyra94936;rank=1 scaffold_26 . exon 453070 453178 . - . ID=Phyra94936.1;Parent=Phyra94936;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 453628 454407 . + . ID=Phyra94937;biotype=protein_coding;external_name=C_scaffold_26000069;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 453628 454407 . + . ID=Phyra94937;Parent=Phyra94937;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 453628 454407 . + 0 ID=Phyra94937;Parent=Phyra94937;rank=1 scaffold_26 . exon 453628 454407 . + . ID=Phyra94937.1;Parent=Phyra94937;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 454729 454971 . - . ID=Phyra94939;biotype=protein_coding;external_name=C_scaffold_26000071;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 454729 454971 . - . ID=Phyra94939;Parent=Phyra94939;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 454729 454971 . - 0 ID=Phyra94939;Parent=Phyra94939;rank=1 scaffold_26 . exon 454729 454971 . - . ID=Phyra94939.1;Parent=Phyra94939;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 455399 458512 . - . ID=Phyra94941;biotype=protein_coding;external_name=C_scaffold_26000073;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 455399 458512 . - . ID=Phyra94941;Parent=Phyra94941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 455399 455923 . - 0 ID=Phyra94941;Parent=Phyra94941;rank=4 scaffold_26 . exon 455399 455923 . - . ID=Phyra94941.4;Parent=Phyra94941;constitutive=1;rank=4 scaffold_26 . CDS 455945 456131 . - 0 ID=Phyra94941;Parent=Phyra94941;rank=3 scaffold_26 . exon 455945 456131 . - . ID=Phyra94941.3;Parent=Phyra94941;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 456212 456390 . - 0 ID=Phyra94941;Parent=Phyra94941;rank=2 scaffold_26 . CDS 456809 458512 . - 0 ID=Phyra94941;Parent=Phyra94941;rank=1 scaffold_26 . repeat_region 462472 462485 . ? . description=dust scaffold_26 ensembl protein_coding_gene 459150 461046 . + . ID=Phyra77802;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000145;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 459150 461046 . + . ID=Phyra77802;Parent=Phyra77802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 459150 459277 . + 0 ID=Phyra77802;Parent=Phyra77802;rank=1 scaffold_26 . exon 459150 459277 . + . ID=Phyra77802.1;Parent=Phyra77802;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 459343 459478 . + 0 ID=Phyra77802;Parent=Phyra77802;rank=2 scaffold_26 . exon 459343 459478 . + . ID=Phyra77802.2;Parent=Phyra77802;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 459551 459727 . + 0 ID=Phyra77802;Parent=Phyra77802;rank=3 scaffold_26 . exon 459551 459727 . + . ID=Phyra77802.3;Parent=Phyra77802;constitutive=1;rank=3 scaffold_26 . CDS 459809 459841 . + 0 ID=Phyra77802;Parent=Phyra77802;rank=4 scaffold_26 . exon 459809 459841 . + . ID=Phyra77802.4;Parent=Phyra77802;constitutive=1;rank=4 scaffold_26 . CDS 459946 461046 . + 0 ID=Phyra77802;Parent=Phyra77802;rank=5 scaffold_26 . exon 459946 461046 . + . ID=Phyra77802.5;Parent=Phyra77802;constitutive=1;rank=5 scaffold_26 ensembl protein_coding_gene 461565 462458 . - . ID=Phyra77803;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000146;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 461565 462458 . - . ID=Phyra77803;Parent=Phyra77803;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 461565 462458 . - 0 ID=Phyra77803;Parent=Phyra77803;rank=1 scaffold_26 . exon 461565 462458 . - . ID=Phyra77803.1;Parent=Phyra77803;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 462955 464372 . + . ID=Phyra77804;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000147;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 462955 464372 . + . ID=Phyra77804;Parent=Phyra77804;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 462955 463497 . + 0 ID=Phyra77804;Parent=Phyra77804;rank=1 scaffold_26 . exon 462955 463497 . + . ID=Phyra77804.1;Parent=Phyra77804;constitutive=1;rank=1 scaffold_26 . CDS 463518 464372 . + 0 ID=Phyra77804;Parent=Phyra77804;rank=2 scaffold_26 . exon 463518 464372 . + . ID=Phyra77804.2;Parent=Phyra77804;constitutive=1;rank=2 scaffold_26 . exon 456212 456390 . - . ID=Phyra94941.2;Parent=Phyra94941;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_26 . exon 456809 458512 . - . ID=Phyra94941.1;Parent=Phyra94941;constitutive=1;rank=1 scaffold_26 . repeat_region 469108 469143 . ? . description=trf scaffold_26 . biological_region 470983 470985 0.999 + . logic_name=eponine scaffold_26 . biological_region 473693 473694 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 471337 472596 . - . ID=Phyra45845;biotype=protein_coding;external_name=gwEuk.26.77.1;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 471337 472596 . - . ID=Phyra45845;Parent=Phyra45845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 471337 472596 . - 0 ID=Phyra45845;Parent=Phyra45845;rank=1 scaffold_26 . exon 471337 472596 . - . ID=Phyra45845.1;Parent=Phyra45845;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 466597 468051 . + . ID=Phyra77805;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000148;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 466597 468051 . + . ID=Phyra77805;Parent=Phyra77805;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 466597 468051 . + 0 ID=Phyra77805;Parent=Phyra77805;rank=1 scaffold_26 . exon 466597 468051 . + . ID=Phyra77805.1;Parent=Phyra77805;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 469484 470935 . + . ID=Phyra77806;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000149;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 469484 470935 . + . ID=Phyra77806;Parent=Phyra77806;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 469484 470935 . + 0 ID=Phyra77806;Parent=Phyra77806;rank=1 scaffold_26 . exon 469484 470935 . + . ID=Phyra77806.1;Parent=Phyra77806;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 473290 474696 . - . ID=Phyra77808;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000151;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 473290 474696 . - . ID=Phyra77808;Parent=Phyra77808;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 473290 474696 . - 0 ID=Phyra77808;Parent=Phyra77808;rank=1 scaffold_26 . exon 473290 474696 . - . ID=Phyra77808.1;Parent=Phyra77808;constitutive=1;rank=1 scaffold_26 . repeat_region 476678 476685 . ? . description=dust scaffold_26 ensembl protein_coding_gene 477424 478572 . + . ID=Phyra77809;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000152;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 477424 478572 . + . ID=Phyra77809;Parent=Phyra77809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 477424 477633 . + 0 ID=Phyra77809;Parent=Phyra77809;rank=1 scaffold_26 . exon 477424 477633 . + . ID=Phyra77809.1;Parent=Phyra77809;constitutive=1;rank=1 scaffold_26 . CDS 477709 478572 . + 0 ID=Phyra77809;Parent=Phyra77809;rank=2 scaffold_26 . exon 477709 478572 . + . ID=Phyra77809.2;Parent=Phyra77809;constitutive=1;rank=2 scaffold_26 ensembl protein_coding_gene 480876 481187 . - . ID=Phyra77812;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000155;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 480876 481187 . - . ID=Phyra77812;Parent=Phyra77812;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 480876 481187 . - 0 ID=Phyra77812;Parent=Phyra77812;rank=1 scaffold_26 . exon 480876 481187 . - . ID=Phyra77812.1;Parent=Phyra77812;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 478774 480643 . - . ID=Phyra94943;biotype=protein_coding;external_name=C_scaffold_26000075;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 478774 480643 . - . ID=Phyra94943;Parent=Phyra94943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 478774 478979 . - 0 ID=Phyra94943;Parent=Phyra94943;rank=7 scaffold_26 . exon 478774 478979 . - . ID=Phyra94943.7;Parent=Phyra94943;constitutive=1;ensembl_phase=1;rank=7 scaffold_26 . CDS 479068 479191 . - 0 ID=Phyra94943;Parent=Phyra94943;rank=6 scaffold_26 . exon 479068 479191 . - . ID=Phyra94943.6;Parent=Phyra94943;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_26 . CDS 479330 479482 . - 0 ID=Phyra94943;Parent=Phyra94943;rank=5 scaffold_26 . exon 479330 479482 . - . ID=Phyra94943.5;Parent=Phyra94943;constitutive=1;rank=5 scaffold_26 . CDS 479809 479847 . - 0 ID=Phyra94943;Parent=Phyra94943;rank=4 scaffold_26 . exon 479809 479847 . - . ID=Phyra94943.4;Parent=Phyra94943;constitutive=1;rank=4 scaffold_26 . CDS 479931 480044 . - 0 ID=Phyra94943;Parent=Phyra94943;rank=3 scaffold_26 . exon 479931 480044 . - . ID=Phyra94943.3;Parent=Phyra94943;constitutive=1;rank=3 scaffold_26 . CDS 480118 480209 . - 0 ID=Phyra94943;Parent=Phyra94943;rank=2 scaffold_26 . exon 480118 480209 . - . ID=Phyra94943.2;Parent=Phyra94943;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 480358 480643 . - 0 ID=Phyra94943;Parent=Phyra94943;rank=1 scaffold_26 . exon 480358 480643 . - . ID=Phyra94943.1;Parent=Phyra94943;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl pseudogene 486366 490766 . + . ID=Phyra45855;biotype=pseudogene;external_name=gwEuk.26.87.1;logic_name=jgi_phyra1 scaffold_26 ensembl pseudogene 486366 490766 . + . ID=Phyra45855;Parent=Phyra45855;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_26 . exon 486366 487050 . + . ID=Phyra45855.1;Parent=Phyra45855;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . exon 487087 487266 . + . ID=Phyra45855.2;Parent=Phyra45855;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_26 . exon 487342 487672 . + . ID=Phyra45855.3;Parent=Phyra45855;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_26 . exon 487742 488033 . + . ID=Phyra45855.4;Parent=Phyra45855;constitutive=1;ensembl_phase=2;rank=4 scaffold_26 . exon 488121 488232 . + . ID=Phyra45855.5;Parent=Phyra45855;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_26 . exon 488374 489712 . + . ID=Phyra45855.6;Parent=Phyra45855;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_26 . exon 489761 490219 . + . ID=Phyra45855.7;Parent=Phyra45855;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_26 . exon 490310 490482 . + . ID=Phyra45855.8;Parent=Phyra45855;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_26 . exon 490534 490766 . + . ID=Phyra45855.9;Parent=Phyra45855;constitutive=1;ensembl_phase=1;rank=9 scaffold_26 . biological_region 496699 496701 0.999 + . logic_name=eponine scaffold_26 . biological_region 498470 498471 0.999 - . logic_name=eponine scaffold_26 . repeat_region 499828 499852 . ? . description=trf scaffold_26 . repeat_region 500176 500185 . ? . description=dust scaffold_26 ensembl protein_coding_gene 496171 499632 . - . ID=Phyra77813;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000156;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 496171 499632 . - . ID=Phyra77813;Parent=Phyra77813;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 496171 496285 . - 0 ID=Phyra77813;Parent=Phyra77813;rank=3 scaffold_26 . exon 496171 496285 . - . ID=Phyra77813.3;Parent=Phyra77813;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 496320 496342 . - 0 ID=Phyra77813;Parent=Phyra77813;rank=2 scaffold_26 . exon 496320 496342 . - . ID=Phyra77813.2;Parent=Phyra77813;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_26 . CDS 496537 499632 . - 0 ID=Phyra77813;Parent=Phyra77813;rank=1 scaffold_26 . exon 496537 499632 . - . ID=Phyra77813.1;Parent=Phyra77813;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 500629 502326 . + . ID=Phyra77814;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000157;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 500629 502326 . + . ID=Phyra77814;Parent=Phyra77814;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 500629 502326 . + 0 ID=Phyra77814;Parent=Phyra77814;rank=1 scaffold_26 . exon 500629 502326 . + . ID=Phyra77814.1;Parent=Phyra77814;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 504902 507781 . - . ID=Phyra77815;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000158;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 504902 507781 . - . ID=Phyra77815;Parent=Phyra77815;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 504902 504910 . - 0 ID=Phyra77815;Parent=Phyra77815;rank=6 scaffold_26 . exon 504902 504910 . - . ID=Phyra77815.6;Parent=Phyra77815;constitutive=1;rank=6 scaffold_26 . CDS 505348 505355 . - 0 ID=Phyra77815;Parent=Phyra77815;rank=5 scaffold_26 . exon 505348 505355 . - . ID=Phyra77815.5;Parent=Phyra77815;constitutive=1;ensembl_phase=1;rank=5 scaffold_26 . CDS 505540 506124 . - 0 ID=Phyra77815;Parent=Phyra77815;rank=4 scaffold_26 . exon 505540 506124 . - . ID=Phyra77815.4;Parent=Phyra77815;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_26 . CDS 506185 506339 . - 0 ID=Phyra77815;Parent=Phyra77815;rank=3 scaffold_26 . CDS 506629 506697 . - 0 ID=Phyra77815;Parent=Phyra77815;rank=2 scaffold_26 . CDS 506730 507781 . - 0 ID=Phyra77815;Parent=Phyra77815;rank=1 scaffold_26 ensembl protein_coding_gene 504067 504803 . + . ID=Phyra94947;biotype=protein_coding;external_name=C_scaffold_26000079;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 504067 504803 . + . ID=Phyra94947;Parent=Phyra94947;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 504067 504650 . + 0 ID=Phyra94947;Parent=Phyra94947;rank=1 scaffold_26 . exon 504067 504650 . + . ID=Phyra94947.1;Parent=Phyra94947;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 504782 504803 . + 0 ID=Phyra94947;Parent=Phyra94947;rank=2 scaffold_26 . exon 504782 504803 . + . ID=Phyra94947.2;Parent=Phyra94947;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 ensembl protein_coding_gene 511701 511934 . - . ID=Phyra45859;biotype=protein_coding;external_name=gwEuk.26.91.1;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 511701 511934 . - . ID=Phyra45859;Parent=Phyra45859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 511701 511934 . - 0 ID=Phyra45859;Parent=Phyra45859;rank=1 scaffold_26 . exon 511701 511934 . - . ID=Phyra45859.1;Parent=Phyra45859;constitutive=1;rank=1 scaffold_26 . exon 506185 506339 . - . ID=Phyra77815.3;Parent=Phyra77815;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_26 . exon 506629 506697 . - . ID=Phyra77815.2;Parent=Phyra77815;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_26 . exon 506730 507781 . - . ID=Phyra77815.1;Parent=Phyra77815;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 513446 515074 . - . ID=Phyra77816;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000159;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 513446 515074 . - . ID=Phyra77816;Parent=Phyra77816;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 513446 515074 . - 0 ID=Phyra77816;Parent=Phyra77816;rank=1 scaffold_26 . exon 513446 515074 . - . ID=Phyra77816.1;Parent=Phyra77816;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 508233 509528 . + . ID=Phyra94949;biotype=protein_coding;external_name=C_scaffold_26000081;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 508233 509528 . + . ID=Phyra94949;Parent=Phyra94949;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 508233 508348 . + 0 ID=Phyra94949;Parent=Phyra94949;rank=1 scaffold_26 . exon 508233 508348 . + . ID=Phyra94949.1;Parent=Phyra94949;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 508779 509065 . + 0 ID=Phyra94949;Parent=Phyra94949;rank=2 scaffold_26 . exon 508779 509065 . + . ID=Phyra94949.2;Parent=Phyra94949;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 509162 509401 . + 0 ID=Phyra94949;Parent=Phyra94949;rank=3 scaffold_26 . exon 509162 509401 . + . ID=Phyra94949.3;Parent=Phyra94949;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 509509 509528 . + 0 ID=Phyra94949;Parent=Phyra94949;rank=4 scaffold_26 . exon 509509 509528 . + . ID=Phyra94949.4;Parent=Phyra94949;constitutive=1;ensembl_phase=1;rank=4 scaffold_26 . repeat_region 521086 521094 . ? . description=dust scaffold_26 . repeat_region 524003 532726 . ? . description=dust scaffold_26 ensembl protein_coding_gene 515758 517416 . - . ID=Phyra77817;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000160;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 515758 517416 . - . ID=Phyra77817;Parent=Phyra77817;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 515758 517416 . - 0 ID=Phyra77817;Parent=Phyra77817;rank=1 scaffold_26 . exon 515758 517416 . - . ID=Phyra77817.1;Parent=Phyra77817;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 517947 518729 . - . ID=Phyra77818;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000161;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 517947 518729 . - . ID=Phyra77818;Parent=Phyra77818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 517947 518729 . - 0 ID=Phyra77818;Parent=Phyra77818;rank=1 scaffold_26 . exon 517947 518729 . - . ID=Phyra77818.1;Parent=Phyra77818;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 519110 520783 . - . ID=Phyra77819;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000162;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 519110 520783 . - . ID=Phyra77819;Parent=Phyra77819;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 519110 520783 . - 0 ID=Phyra77819;Parent=Phyra77819;rank=1 scaffold_26 . exon 519110 520783 . - . ID=Phyra77819.1;Parent=Phyra77819;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 523045 523800 . - . ID=Phyra77820;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000163;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 523045 523800 . - . ID=Phyra77820;Parent=Phyra77820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 523045 523800 . - 0 ID=Phyra77820;Parent=Phyra77820;rank=1 scaffold_26 . exon 523045 523800 . - . ID=Phyra77820.1;Parent=Phyra77820;constitutive=1;rank=1 scaffold_26 . biological_region 533814 533817 0.999 - . logic_name=eponine scaffold_26 . biological_region 534387 534392 0.999 + . logic_name=eponine scaffold_26 ensembl protein_coding_gene 533685 534653 . - . ID=Phyra77821;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_26000164;logic_name=jgi_phyra1 scaffold_26 ensembl transcript 533685 534653 . - . ID=Phyra77821;Parent=Phyra77821;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_26 . CDS 533685 534653 . - 0 ID=Phyra77821;Parent=Phyra77821;rank=1 scaffold_26 . exon 533685 534653 . - . ID=Phyra77821.1;Parent=Phyra77821;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_27 1 538834 scaffold_27 . biological_region 5798 5802 0.999 + . logic_name=eponine scaffold_27 . biological_region 5897 5898 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 4299 9733 . - . ID=Phyra94953;biotype=protein_coding;external_name=C_scaffold_27000001;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 4299 9733 . - . ID=Phyra94953;Parent=Phyra94953;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 4299 4589 . - 0 ID=Phyra94953;Parent=Phyra94953;rank=9 scaffold_27 . exon 4299 4589 . - . ID=Phyra94953.9;Parent=Phyra94953;constitutive=1;rank=9 scaffold_27 . CDS 4644 4794 . - 0 ID=Phyra94953;Parent=Phyra94953;rank=8 scaffold_27 . exon 4644 4794 . - . ID=Phyra94953.8;Parent=Phyra94953;constitutive=1;ensembl_phase=2;rank=8 scaffold_27 . CDS 4875 5047 . - 0 ID=Phyra94953;Parent=Phyra94953;rank=7 scaffold_27 . exon 4875 5047 . - . ID=Phyra94953.7;Parent=Phyra94953;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_27 . CDS 5109 5645 . - 0 ID=Phyra94953;Parent=Phyra94953;rank=6 scaffold_27 . exon 5109 5645 . - . ID=Phyra94953.6;Parent=Phyra94953;constitutive=1;rank=6 scaffold_27 . CDS 5676 5919 . - 0 ID=Phyra94953;Parent=Phyra94953;rank=5 scaffold_27 . exon 5676 5919 . - . ID=Phyra94953.5;Parent=Phyra94953;constitutive=1;ensembl_phase=2;rank=5 scaffold_27 . CDS 6045 6202 . - 0 ID=Phyra94953;Parent=Phyra94953;rank=4 scaffold_27 . exon 6045 6202 . - . ID=Phyra94953.4;Parent=Phyra94953;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_27 . CDS 6267 6491 . - 0 ID=Phyra94953;Parent=Phyra94953;rank=3 scaffold_27 . exon 6267 6491 . - . ID=Phyra94953.3;Parent=Phyra94953;constitutive=1;rank=3 scaffold_27 . CDS 6516 9311 . - 0 ID=Phyra94953;Parent=Phyra94953;rank=2 scaffold_27 . exon 6516 9311 . - . ID=Phyra94953.2;Parent=Phyra94953;constitutive=1;rank=2 scaffold_27 . CDS 9368 9733 . - 0 ID=Phyra94953;Parent=Phyra94953;rank=1 scaffold_27 . exon 9368 9733 . - . ID=Phyra94953.1;Parent=Phyra94953;constitutive=1;rank=1 scaffold_27 . repeat_region 12361 12382 . ? . description=trf scaffold_27 . repeat_region 14550 14696 . ? . description=trf scaffold_27 . repeat_region 14550 14696 . ? . description=trf scaffold_27 . repeat_region 14568 14681 . ? . description=trf scaffold_27 ensembl protein_coding_gene 9990 11226 . + . ID=Phyra71555;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_27000001;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 9990 11226 . + . ID=Phyra71555;Parent=Phyra71555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 9990 11122 . + 0 ID=Phyra71555;Parent=Phyra71555;rank=1 scaffold_27 . exon 9990 11122 . + . ID=Phyra71555.1;Parent=Phyra71555;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 11160 11226 . + 0 ID=Phyra71555;Parent=Phyra71555;rank=2 scaffold_27 . exon 11160 11226 . + . ID=Phyra71555.2;Parent=Phyra71555;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 ensembl protein_coding_gene 11699 12469 . + . ID=Phyra77824;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000003;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 11699 12469 . + . ID=Phyra77824;Parent=Phyra77824;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 11699 11889 . + 0 ID=Phyra77824;Parent=Phyra77824;rank=1 scaffold_27 . exon 11699 11889 . + . ID=Phyra77824.1;Parent=Phyra77824;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 11924 11994 . + 0 ID=Phyra77824;Parent=Phyra77824;rank=2 scaffold_27 . exon 11924 11994 . + . ID=Phyra77824.2;Parent=Phyra77824;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 12086 12152 . + 0 ID=Phyra77824;Parent=Phyra77824;rank=3 scaffold_27 . exon 12086 12152 . + . ID=Phyra77824.3;Parent=Phyra77824;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_27 . CDS 12178 12194 . + 0 ID=Phyra77824;Parent=Phyra77824;rank=4 scaffold_27 . exon 12178 12194 . + . ID=Phyra77824.4;Parent=Phyra77824;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_27 . CDS 12220 12269 . + 0 ID=Phyra77824;Parent=Phyra77824;rank=5 scaffold_27 . exon 12220 12269 . + . ID=Phyra77824.5;Parent=Phyra77824;constitutive=1;ensembl_phase=1;rank=5 scaffold_27 . CDS 12380 12469 . + 0 ID=Phyra77824;Parent=Phyra77824;rank=6 scaffold_27 . exon 12380 12469 . + . ID=Phyra77824.6;Parent=Phyra77824;constitutive=1;rank=6 scaffold_27 ensembl protein_coding_gene 13371 14729 . - . ID=Phyra77825;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000004;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 13371 14729 . - . ID=Phyra77825;Parent=Phyra77825;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 13371 14729 . - 0 ID=Phyra77825;Parent=Phyra77825;rank=1 scaffold_27 . exon 13371 14729 . - . ID=Phyra77825.1;Parent=Phyra77825;constitutive=1;rank=1 scaffold_27 . biological_region 21714 21718 0.999 + . logic_name=eponine scaffold_27 . biological_region 21840 21840 0.999 + . logic_name=eponine scaffold_27 . biological_region 27479 27481 0.999 + . logic_name=eponine scaffold_27 . biological_region 29591 29594 0.999 - . logic_name=eponine scaffold_27 . biological_region 29615 29615 0.999 - . logic_name=eponine scaffold_27 . biological_region 29625 29630 0.999 + . logic_name=eponine scaffold_27 . biological_region 29646 29649 0.999 + . logic_name=eponine scaffold_27 . biological_region 29653 29661 0.999 - . logic_name=eponine scaffold_27 . biological_region 29680 29687 0.999 - . logic_name=eponine scaffold_27 . biological_region 29723 29725 0.999 - . logic_name=eponine scaffold_27 . repeat_region 29825 29844 . ? . description=dust scaffold_27 ensembl protein_coding_gene 22384 25700 . + . ID=Phyra77827;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000006;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 22384 25700 . + . ID=Phyra77827;Parent=Phyra77827;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 22384 22611 . + 0 ID=Phyra77827;Parent=Phyra77827;rank=1 scaffold_27 . exon 22384 22611 . + . ID=Phyra77827.1;Parent=Phyra77827;constitutive=1;rank=1 scaffold_27 . CDS 22683 22967 . + 0 ID=Phyra77827;Parent=Phyra77827;rank=2 scaffold_27 . exon 22683 22967 . + . ID=Phyra77827.2;Parent=Phyra77827;constitutive=1;rank=2 scaffold_27 . CDS 23297 23408 . + 0 ID=Phyra77827;Parent=Phyra77827;rank=3 scaffold_27 . exon 23297 23408 . + . ID=Phyra77827.3;Parent=Phyra77827;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_27 . CDS 23514 23647 . + 0 ID=Phyra77827;Parent=Phyra77827;rank=4 scaffold_27 . exon 23514 23647 . + . ID=Phyra77827.4;Parent=Phyra77827;constitutive=1;ensembl_phase=1;rank=4 scaffold_27 . CDS 23720 23854 . + 0 ID=Phyra77827;Parent=Phyra77827;rank=5 scaffold_27 . exon 23720 23854 . + . ID=Phyra77827.5;Parent=Phyra77827;constitutive=1;rank=5 scaffold_27 . CDS 23944 24027 . + 0 ID=Phyra77827;Parent=Phyra77827;rank=6 scaffold_27 . exon 23944 24027 . + . ID=Phyra77827.6;Parent=Phyra77827;constitutive=1;rank=6 scaffold_27 . CDS 24101 24160 . + 0 ID=Phyra77827;Parent=Phyra77827;rank=7 scaffold_27 . exon 24101 24160 . + . ID=Phyra77827.7;Parent=Phyra77827;constitutive=1;rank=7 scaffold_27 . CDS 24499 24728 . + 0 ID=Phyra77827;Parent=Phyra77827;rank=8 scaffold_27 . exon 24499 24728 . + . ID=Phyra77827.8;Parent=Phyra77827;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_27 . CDS 24810 24948 . + 0 ID=Phyra77827;Parent=Phyra77827;rank=9 scaffold_27 . exon 24810 24948 . + . ID=Phyra77827.9;Parent=Phyra77827;constitutive=1;ensembl_phase=2;rank=9 scaffold_27 . CDS 25009 25353 . + 0 ID=Phyra77827;Parent=Phyra77827;rank=10 scaffold_27 . exon 25009 25353 . + . ID=Phyra77827.10;Parent=Phyra77827;constitutive=1;rank=10 scaffold_27 . CDS 25431 25700 . + 0 ID=Phyra77827;Parent=Phyra77827;rank=11 scaffold_27 . exon 25431 25700 . + . ID=Phyra77827.11;Parent=Phyra77827;constitutive=1;rank=11 scaffold_27 ensembl protein_coding_gene 25885 27064 . - . ID=Phyra77828;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000007;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 25885 27064 . - . ID=Phyra77828;Parent=Phyra77828;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 25885 25896 . - 0 ID=Phyra77828;Parent=Phyra77828;rank=4 scaffold_27 . exon 25885 25896 . - . ID=Phyra77828.4;Parent=Phyra77828;constitutive=1;rank=4 scaffold_27 . CDS 26030 26263 . - 0 ID=Phyra77828;Parent=Phyra77828;rank=3 scaffold_27 . exon 26030 26263 . - . ID=Phyra77828.3;Parent=Phyra77828;constitutive=1;rank=3 scaffold_27 . CDS 26332 26378 . - 0 ID=Phyra77828;Parent=Phyra77828;rank=2 scaffold_27 . exon 26332 26378 . - . ID=Phyra77828.2;Parent=Phyra77828;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 26452 27064 . - 0 ID=Phyra77828;Parent=Phyra77828;rank=1 scaffold_27 . exon 26452 27064 . - . ID=Phyra77828.1;Parent=Phyra77828;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 27723 30083 . - . ID=Phyra77829;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000008;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 27723 30083 . - . ID=Phyra77829;Parent=Phyra77829;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 27723 30083 . - 0 ID=Phyra77829;Parent=Phyra77829;rank=1 scaffold_27 . exon 27723 30083 . - . ID=Phyra77829.1;Parent=Phyra77829;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 20645 22120 . - . ID=Phyra94954;biotype=protein_coding;external_name=C_scaffold_27000002;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 20645 22120 . - . ID=Phyra94954;Parent=Phyra94954;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 20645 21979 . - 0 ID=Phyra94954;Parent=Phyra94954;rank=2 scaffold_27 . exon 20645 21979 . - . ID=Phyra94954.2;Parent=Phyra94954;constitutive=1;rank=2 scaffold_27 . CDS 22043 22120 . - 0 ID=Phyra94954;Parent=Phyra94954;rank=1 scaffold_27 . exon 22043 22120 . - . ID=Phyra94954.1;Parent=Phyra94954;constitutive=1;rank=1 scaffold_27 . repeat_region 36257 36276 . ? . description=trf scaffold_27 ensembl protein_coding_gene 31265 35359 . + . ID=Phyra77830;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000009;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 31265 35359 . + . ID=Phyra77830;Parent=Phyra77830;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 31265 31978 . + 0 ID=Phyra77830;Parent=Phyra77830;rank=1 scaffold_27 . exon 31265 31978 . + . ID=Phyra77830.1;Parent=Phyra77830;constitutive=1;rank=1 scaffold_27 . CDS 32049 32418 . + 0 ID=Phyra77830;Parent=Phyra77830;rank=2 scaffold_27 . exon 32049 32418 . + . ID=Phyra77830.2;Parent=Phyra77830;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_27 . CDS 32483 32751 . + 0 ID=Phyra77830;Parent=Phyra77830;rank=3 scaffold_27 . exon 32483 32751 . + . ID=Phyra77830.3;Parent=Phyra77830;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 . CDS 32818 32958 . + 0 ID=Phyra77830;Parent=Phyra77830;rank=4 scaffold_27 . exon 32818 32958 . + . ID=Phyra77830.4;Parent=Phyra77830;constitutive=1;rank=4 scaffold_27 . CDS 33469 34002 . + 0 ID=Phyra77830;Parent=Phyra77830;rank=5 scaffold_27 . exon 33469 34002 . + . ID=Phyra77830.5;Parent=Phyra77830;constitutive=1;rank=5 scaffold_27 . CDS 34077 34148 . + 0 ID=Phyra77830;Parent=Phyra77830;rank=6 scaffold_27 . exon 34077 34148 . + . ID=Phyra77830.6;Parent=Phyra77830;constitutive=1;rank=6 scaffold_27 . CDS 34355 35359 . + 0 ID=Phyra77830;Parent=Phyra77830;rank=7 scaffold_27 . exon 34355 35359 . + . ID=Phyra77830.7;Parent=Phyra77830;constitutive=1;rank=7 scaffold_27 ensembl protein_coding_gene 36651 42571 . + . ID=Phyra94956;biotype=protein_coding;external_name=C_scaffold_27000004;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 36651 42571 . + . ID=Phyra94956;Parent=Phyra94956;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 36651 36653 . + 0 ID=Phyra94956;Parent=Phyra94956;rank=1 scaffold_27 . exon 36651 36653 . + . ID=Phyra94956.1;Parent=Phyra94956;constitutive=1;rank=1 scaffold_27 . CDS 36780 36837 . + 0 ID=Phyra94956;Parent=Phyra94956;rank=2 scaffold_27 . exon 36780 36837 . + . ID=Phyra94956.2;Parent=Phyra94956;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_27 . CDS 37023 37075 . + 0 ID=Phyra94956;Parent=Phyra94956;rank=3 scaffold_27 . exon 37023 37075 . + . ID=Phyra94956.3;Parent=Phyra94956;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 . CDS 37151 37258 . + 0 ID=Phyra94956;Parent=Phyra94956;rank=4 scaffold_27 . exon 37151 37258 . + . ID=Phyra94956.4;Parent=Phyra94956;constitutive=1;rank=4 scaffold_27 . CDS 37323 37442 . + 0 ID=Phyra94956;Parent=Phyra94956;rank=5 scaffold_27 . exon 37323 37442 . + . ID=Phyra94956.5;Parent=Phyra94956;constitutive=1;rank=5 scaffold_27 . CDS 37676 37742 . + 0 ID=Phyra94956;Parent=Phyra94956;rank=6 scaffold_27 . exon 37676 37742 . + . ID=Phyra94956.6;Parent=Phyra94956;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_27 . CDS 37803 37883 . + 0 ID=Phyra94956;Parent=Phyra94956;rank=7 scaffold_27 . exon 37803 37883 . + . ID=Phyra94956.7;Parent=Phyra94956;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_27 . CDS 38010 38566 . + 0 ID=Phyra94956;Parent=Phyra94956;rank=8 scaffold_27 . exon 38010 38566 . + . ID=Phyra94956.8;Parent=Phyra94956;constitutive=1;ensembl_phase=1;rank=8 scaffold_27 . CDS 38632 38772 . + 0 ID=Phyra94956;Parent=Phyra94956;rank=9 scaffold_27 . exon 38632 38772 . + . ID=Phyra94956.9;Parent=Phyra94956;constitutive=1;rank=9 scaffold_27 . CDS 38850 38948 . + 0 ID=Phyra94956;Parent=Phyra94956;rank=10 scaffold_27 . exon 38850 38948 . + . ID=Phyra94956.10;Parent=Phyra94956;constitutive=1;rank=10 scaffold_27 . CDS 39018 39578 . + 0 ID=Phyra94956;Parent=Phyra94956;rank=11 scaffold_27 . exon 39018 39578 . + . ID=Phyra94956.11;Parent=Phyra94956;constitutive=1;rank=11 scaffold_27 . CDS 39600 41520 . + 0 ID=Phyra94956;Parent=Phyra94956;rank=12 scaffold_27 . exon 39600 41520 . + . ID=Phyra94956.12;Parent=Phyra94956;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_27 . CDS 41569 42296 . + 0 ID=Phyra94956;Parent=Phyra94956;rank=13 scaffold_27 . CDS 42356 42571 . + 0 ID=Phyra94956;Parent=Phyra94956;rank=14 scaffold_27 . biological_region 41219 41223 0.999 - . logic_name=eponine scaffold_27 . biological_region 41278 41278 0.999 + . logic_name=eponine scaffold_27 . biological_region 41924 41924 0.999 + . logic_name=eponine scaffold_27 . biological_region 43296 43303 0.999 + . logic_name=eponine scaffold_27 . biological_region 43322 43324 0.999 + . logic_name=eponine scaffold_27 . biological_region 45867 45872 0.999 + . logic_name=eponine scaffold_27 . biological_region 46576 46581 0.999 - . logic_name=eponine scaffold_27 . biological_region 48101 48104 0.999 - . logic_name=eponine scaffold_27 . repeat_region 48519 48573 . ? . description=dust scaffold_27 . biological_region 49238 49238 0.999 + . logic_name=eponine scaffold_27 ensembl protein_coding_gene 44370 46102 . + . ID=Phyra77833;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000012;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 44370 46102 . + . ID=Phyra77833;Parent=Phyra77833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 44370 44793 . + 0 ID=Phyra77833;Parent=Phyra77833;rank=1 scaffold_27 . exon 44370 44793 . + . ID=Phyra77833.1;Parent=Phyra77833;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 44876 44969 . + 0 ID=Phyra77833;Parent=Phyra77833;rank=2 scaffold_27 . exon 44876 44969 . + . ID=Phyra77833.2;Parent=Phyra77833;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_27 . CDS 45039 45312 . + 0 ID=Phyra77833;Parent=Phyra77833;rank=3 scaffold_27 . exon 45039 45312 . + . ID=Phyra77833.3;Parent=Phyra77833;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 45385 45557 . + 0 ID=Phyra77833;Parent=Phyra77833;rank=4 scaffold_27 . exon 45385 45557 . + . ID=Phyra77833.4;Parent=Phyra77833;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_27 . CDS 45622 46102 . + 0 ID=Phyra77833;Parent=Phyra77833;rank=5 scaffold_27 . exon 45622 46102 . + . ID=Phyra77833.5;Parent=Phyra77833;constitutive=1;ensembl_phase=2;rank=5 scaffold_27 ensembl protein_coding_gene 46331 49302 . - . ID=Phyra77834;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000013;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 46331 49302 . - . ID=Phyra77834;Parent=Phyra77834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 46331 48511 . - 0 ID=Phyra77834;Parent=Phyra77834;rank=3 scaffold_27 . exon 46331 48511 . - . ID=Phyra77834.3;Parent=Phyra77834;constitutive=1;rank=3 scaffold_27 . CDS 48597 48790 . - 0 ID=Phyra77834;Parent=Phyra77834;rank=2 scaffold_27 . exon 48597 48790 . - . ID=Phyra77834.2;Parent=Phyra77834;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 48867 49302 . - 0 ID=Phyra77834;Parent=Phyra77834;rank=1 scaffold_27 . exon 48867 49302 . - . ID=Phyra77834.1;Parent=Phyra77834;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . exon 41569 42296 . + . ID=Phyra94956.13;Parent=Phyra94956;constitutive=1;ensembl_phase=1;rank=13 scaffold_27 . exon 42356 42571 . + . ID=Phyra94956.14;Parent=Phyra94956;constitutive=1;rank=14 scaffold_27 ensembl protein_coding_gene 42642 43475 . - . ID=Phyra94957;biotype=protein_coding;external_name=C_scaffold_27000005;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 42642 43475 . - . ID=Phyra94957;Parent=Phyra94957;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 42642 43178 . - 0 ID=Phyra94957;Parent=Phyra94957;rank=2 scaffold_27 . exon 42642 43178 . - . ID=Phyra94957.2;Parent=Phyra94957;constitutive=1;rank=2 scaffold_27 . CDS 43221 43475 . - 0 ID=Phyra94957;Parent=Phyra94957;rank=1 scaffold_27 . exon 43221 43475 . - . ID=Phyra94957.1;Parent=Phyra94957;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 54377 56780 . + . ID=Phyra77835;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000014;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 54377 56780 . + . ID=Phyra77835;Parent=Phyra77835;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 54377 54499 . + 0 ID=Phyra77835;Parent=Phyra77835;rank=1 scaffold_27 . exon 54377 54499 . + . ID=Phyra77835.1;Parent=Phyra77835;constitutive=1;rank=1 scaffold_27 . CDS 54567 56780 . + 0 ID=Phyra77835;Parent=Phyra77835;rank=2 scaffold_27 . exon 54567 56780 . + . ID=Phyra77835.2;Parent=Phyra77835;constitutive=1;rank=2 scaffold_27 ensembl protein_coding_gene 56904 60484 . - . ID=Phyra77836;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000015;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 56904 60484 . - . ID=Phyra77836;Parent=Phyra77836;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 56904 58445 . - 0 ID=Phyra77836;Parent=Phyra77836;rank=7 scaffold_27 . exon 56904 58445 . - . ID=Phyra77836.7;Parent=Phyra77836;constitutive=1;rank=7 scaffold_27 . CDS 58532 58724 . - 0 ID=Phyra77836;Parent=Phyra77836;rank=6 scaffold_27 . exon 58532 58724 . - . ID=Phyra77836.6;Parent=Phyra77836;constitutive=1;ensembl_phase=2;rank=6 scaffold_27 . CDS 58799 58946 . - 0 ID=Phyra77836;Parent=Phyra77836;rank=5 scaffold_27 . exon 58799 58946 . - . ID=Phyra77836.5;Parent=Phyra77836;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_27 . CDS 59012 59145 . - 0 ID=Phyra77836;Parent=Phyra77836;rank=4 scaffold_27 . exon 59012 59145 . - . ID=Phyra77836.4;Parent=Phyra77836;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_27 . CDS 59222 59499 . - 0 ID=Phyra77836;Parent=Phyra77836;rank=3 scaffold_27 . exon 59222 59499 . - . ID=Phyra77836.3;Parent=Phyra77836;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_27 . CDS 59571 59620 . - 0 ID=Phyra77836;Parent=Phyra77836;rank=2 scaffold_27 . exon 59571 59620 . - . ID=Phyra77836.2;Parent=Phyra77836;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 59689 60484 . - 0 ID=Phyra77836;Parent=Phyra77836;rank=1 scaffold_27 . exon 59689 60484 . - . ID=Phyra77836.1;Parent=Phyra77836;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . repeat_region 63058 63111 . ? . description=dust scaffold_27 . repeat_region 63344 63361 . ? . description=dust scaffold_27 . biological_region 64041 64041 0.999 + . logic_name=eponine scaffold_27 . biological_region 64143 64147 0.999 + . logic_name=eponine scaffold_27 . biological_region 64190 64192 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 60697 61119 . - . ID=Phyra71557;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_27000003;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 60697 61119 . - . ID=Phyra71557;Parent=Phyra71557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 60697 61119 . - 0 ID=Phyra71557;Parent=Phyra71557;rank=1 scaffold_27 . exon 60697 61119 . - . ID=Phyra71557.1;Parent=Phyra71557;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 64053 65283 . + . ID=Phyra71558;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_27000004;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 64053 65283 . + . ID=Phyra71558;Parent=Phyra71558;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 64053 64220 . + 0 ID=Phyra71558;Parent=Phyra71558;rank=1 scaffold_27 . exon 64053 64220 . + . ID=Phyra71558.1;Parent=Phyra71558;constitutive=1;rank=1 scaffold_27 . CDS 64256 64302 . + 0 ID=Phyra71558;Parent=Phyra71558;rank=2 scaffold_27 . exon 64256 64302 . + . ID=Phyra71558.2;Parent=Phyra71558;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_27 . CDS 64332 64449 . + 0 ID=Phyra71558;Parent=Phyra71558;rank=3 scaffold_27 . exon 64332 64449 . + . ID=Phyra71558.3;Parent=Phyra71558;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 64519 64580 . + 0 ID=Phyra71558;Parent=Phyra71558;rank=4 scaffold_27 . exon 64519 64580 . + . ID=Phyra71558.4;Parent=Phyra71558;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_27 . CDS 64646 64922 . + 0 ID=Phyra71558;Parent=Phyra71558;rank=5 scaffold_27 . exon 64646 64922 . + . ID=Phyra71558.5;Parent=Phyra71558;constitutive=1;ensembl_phase=2;rank=5 scaffold_27 . CDS 64944 64948 . + 0 ID=Phyra71558;Parent=Phyra71558;rank=6 scaffold_27 . exon 64944 64948 . + . ID=Phyra71558.6;Parent=Phyra71558;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_27 . CDS 64985 65126 . + 0 ID=Phyra71558;Parent=Phyra71558;rank=7 scaffold_27 . exon 64985 65126 . + . ID=Phyra71558.7;Parent=Phyra71558;constitutive=1;ensembl_phase=2;rank=7 scaffold_27 . CDS 65191 65283 . + 0 ID=Phyra71558;Parent=Phyra71558;rank=8 scaffold_27 . exon 65191 65283 . + . ID=Phyra71558.8;Parent=Phyra71558;constitutive=1;rank=8 scaffold_27 ensembl protein_coding_gene 61310 62984 . - . ID=Phyra77838;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000017;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 61310 62984 . - . ID=Phyra77838;Parent=Phyra77838;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 61310 61365 . - 0 ID=Phyra77838;Parent=Phyra77838;rank=5 scaffold_27 . exon 61310 61365 . - . ID=Phyra77838.5;Parent=Phyra77838;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_27 . CDS 61465 61563 . - 0 ID=Phyra77838;Parent=Phyra77838;rank=4 scaffold_27 . exon 61465 61563 . - . ID=Phyra77838.4;Parent=Phyra77838;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_27 . CDS 61639 61703 . - 0 ID=Phyra77838;Parent=Phyra77838;rank=3 scaffold_27 . exon 61639 61703 . - . ID=Phyra77838.3;Parent=Phyra77838;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_27 . CDS 61934 62005 . - 0 ID=Phyra77838;Parent=Phyra77838;rank=2 scaffold_27 . exon 61934 62005 . - . ID=Phyra77838.2;Parent=Phyra77838;constitutive=1;rank=2 scaffold_27 . CDS 62196 62984 . - 0 ID=Phyra77838;Parent=Phyra77838;rank=1 scaffold_27 . exon 62196 62984 . - . ID=Phyra77838.1;Parent=Phyra77838;constitutive=1;rank=1 scaffold_27 . repeat_region 77424 77452 . ? . description=trf scaffold_27 ensembl protein_coding_gene 72068 72565 . + . ID=Phyra71559;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_27000005;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 72068 72565 . + . ID=Phyra71559;Parent=Phyra71559;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 72068 72565 . + 0 ID=Phyra71559;Parent=Phyra71559;rank=1 scaffold_27 . exon 72068 72565 . + . ID=Phyra71559.1;Parent=Phyra71559;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 72675 73577 . - . ID=Phyra77841;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000020;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 72675 73577 . - . ID=Phyra77841;Parent=Phyra77841;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 72675 73577 . - 0 ID=Phyra77841;Parent=Phyra77841;rank=1 scaffold_27 . exon 72675 73577 . - . ID=Phyra77841.1;Parent=Phyra77841;constitutive=1;rank=1 scaffold_27 . biological_region 80122 80124 0.999 + . logic_name=eponine scaffold_27 . biological_region 80145 80149 0.999 + . logic_name=eponine scaffold_27 . repeat_region 80733 81281 . ? . description=dust scaffold_27 . biological_region 84275 84278 0.999 - . logic_name=eponine scaffold_27 . biological_region 84294 84295 0.999 + . logic_name=eponine scaffold_27 . biological_region 84378 84379 0.999 - . logic_name=eponine scaffold_27 . biological_region 84542 84543 0.999 + . logic_name=eponine scaffold_27 . biological_region 84649 84651 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 79896 80312 . + . ID=Phyra77842;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000021;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 79896 80312 . + . ID=Phyra77842;Parent=Phyra77842;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 79896 80312 . + 0 ID=Phyra77842;Parent=Phyra77842;rank=1 scaffold_27 . exon 79896 80312 . + . ID=Phyra77842.1;Parent=Phyra77842;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 84021 84839 . + . ID=Phyra77843;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000022;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 84021 84839 . + . ID=Phyra77843;Parent=Phyra77843;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 84021 84839 . + 0 ID=Phyra77843;Parent=Phyra77843;rank=1 scaffold_27 . exon 84021 84839 . + . ID=Phyra77843.1;Parent=Phyra77843;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 85104 85982 . + . ID=Phyra77844;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000023;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 85104 85982 . + . ID=Phyra77844;Parent=Phyra77844;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 85104 85982 . + 0 ID=Phyra77844;Parent=Phyra77844;rank=1 scaffold_27 . exon 85104 85982 . + . ID=Phyra77844.1;Parent=Phyra77844;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 86710 88242 . + . ID=Phyra77845;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000024;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 86710 88242 . + . ID=Phyra77845;Parent=Phyra77845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 86710 88242 . + 0 ID=Phyra77845;Parent=Phyra77845;rank=1 scaffold_27 . exon 86710 88242 . + . ID=Phyra77845.1;Parent=Phyra77845;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 89938 90267 . - . ID=Phyra77846;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000025;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 89938 90267 . - . ID=Phyra77846;Parent=Phyra77846;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 89938 90267 . - 0 ID=Phyra77846;Parent=Phyra77846;rank=1 scaffold_27 . exon 89938 90267 . - . ID=Phyra77846.1;Parent=Phyra77846;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 98975 99724 . + . ID=Phyra77847;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000026;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 98975 99724 . + . ID=Phyra77847;Parent=Phyra77847;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 98975 99724 . + 0 ID=Phyra77847;Parent=Phyra77847;rank=1 scaffold_27 . exon 98975 99724 . + . ID=Phyra77847.1;Parent=Phyra77847;constitutive=1;rank=1 scaffold_27 . repeat_region 101117 101129 . ? . description=dust scaffold_27 . repeat_region 101988 102037 . ? . description=dust scaffold_27 . biological_region 102395 102399 0.999 - . logic_name=eponine scaffold_27 . repeat_region 104751 104800 . ? . description=dust scaffold_27 . biological_region 104872 104872 0.999 - . logic_name=eponine scaffold_27 . biological_region 108450 108450 0.999 + . logic_name=eponine scaffold_27 ensembl protein_coding_gene 101422 101922 . - . ID=Phyra77848;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000027;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 101422 101922 . - . ID=Phyra77848;Parent=Phyra77848;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 101422 101747 . - 0 ID=Phyra77848;Parent=Phyra77848;rank=2 scaffold_27 . exon 101422 101747 . - . ID=Phyra77848.2;Parent=Phyra77848;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 101823 101922 . - 0 ID=Phyra77848;Parent=Phyra77848;rank=1 scaffold_27 . exon 101823 101922 . - . ID=Phyra77848.1;Parent=Phyra77848;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 108640 110608 . + . ID=Phyra94960;biotype=protein_coding;external_name=C_scaffold_27000008;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 108640 110608 . + . ID=Phyra94960;Parent=Phyra94960;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 108640 108744 . + 0 ID=Phyra94960;Parent=Phyra94960;rank=1 scaffold_27 . exon 108640 108744 . + . ID=Phyra94960.1;Parent=Phyra94960;constitutive=1;rank=1 scaffold_27 . CDS 108840 108968 . + 0 ID=Phyra94960;Parent=Phyra94960;rank=2 scaffold_27 . exon 108840 108968 . + . ID=Phyra94960.2;Parent=Phyra94960;constitutive=1;rank=2 scaffold_27 . CDS 109008 109199 . + 0 ID=Phyra94960;Parent=Phyra94960;rank=3 scaffold_27 . exon 109008 109199 . + . ID=Phyra94960.3;Parent=Phyra94960;constitutive=1;rank=3 scaffold_27 . CDS 109540 109635 . + 0 ID=Phyra94960;Parent=Phyra94960;rank=4 scaffold_27 . exon 109540 109635 . + . ID=Phyra94960.4;Parent=Phyra94960;constitutive=1;rank=4 scaffold_27 . CDS 109712 109798 . + 0 ID=Phyra94960;Parent=Phyra94960;rank=5 scaffold_27 . exon 109712 109798 . + . ID=Phyra94960.5;Parent=Phyra94960;constitutive=1;rank=5 scaffold_27 . CDS 109862 109948 . + 0 ID=Phyra94960;Parent=Phyra94960;rank=6 scaffold_27 . CDS 110013 110101 . + 0 ID=Phyra94960;Parent=Phyra94960;rank=7 scaffold_27 . CDS 110170 110245 . + 0 ID=Phyra94960;Parent=Phyra94960;rank=8 scaffold_27 . CDS 110312 110608 . + 0 ID=Phyra94960;Parent=Phyra94960;rank=9 scaffold_27 . repeat_region 119096 119125 . ? . description=trf scaffold_27 ensembl protein_coding_gene 118885 122581 . + . ID=Phyra46187;biotype=protein_coding;external_name=gwEuk.27.130.1;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 118885 122581 . + . ID=Phyra46187;Parent=Phyra46187;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 118885 121020 . + 0 ID=Phyra46187;Parent=Phyra46187;rank=1 scaffold_27 . exon 118885 121020 . + . ID=Phyra46187.1;Parent=Phyra46187;constitutive=1;rank=1 scaffold_27 . CDS 121104 122166 . + 0 ID=Phyra46187;Parent=Phyra46187;rank=2 scaffold_27 . CDS 122244 122581 . + 0 ID=Phyra46187;Parent=Phyra46187;rank=3 scaffold_27 ensembl protein_coding_gene 111069 112493 . - . ID=Phyra71560;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_27000006;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 111069 112493 . - . ID=Phyra71560;Parent=Phyra71560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 111069 112493 . - 0 ID=Phyra71560;Parent=Phyra71560;rank=1 scaffold_27 . exon 111069 112493 . - . ID=Phyra71560.1;Parent=Phyra71560;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 112661 113214 . + . ID=Phyra77851;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000030;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 112661 113214 . + . ID=Phyra77851;Parent=Phyra77851;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 112661 112897 . + 0 ID=Phyra77851;Parent=Phyra77851;rank=1 scaffold_27 . exon 112661 112897 . + . ID=Phyra77851.1;Parent=Phyra77851;constitutive=1;rank=1 scaffold_27 . CDS 112990 113214 . + 0 ID=Phyra77851;Parent=Phyra77851;rank=2 scaffold_27 . exon 112990 113214 . + . ID=Phyra77851.2;Parent=Phyra77851;constitutive=1;rank=2 scaffold_27 ensembl protein_coding_gene 113889 114212 . - . ID=Phyra77852;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000031;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 113889 114212 . - . ID=Phyra77852;Parent=Phyra77852;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 113889 114212 . - 0 ID=Phyra77852;Parent=Phyra77852;rank=1 scaffold_27 . exon 113889 114212 . - . ID=Phyra77852.1;Parent=Phyra77852;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 114416 115384 . - . ID=Phyra77853;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000032;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 114416 115384 . - . ID=Phyra77853;Parent=Phyra77853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 114416 114613 . - 0 ID=Phyra77853;Parent=Phyra77853;rank=4 scaffold_27 . exon 114416 114613 . - . ID=Phyra77853.4;Parent=Phyra77853;constitutive=1;rank=4 scaffold_27 . CDS 114685 114760 . - 0 ID=Phyra77853;Parent=Phyra77853;rank=3 scaffold_27 . exon 114685 114760 . - . ID=Phyra77853.3;Parent=Phyra77853;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 114827 114944 . - 0 ID=Phyra77853;Parent=Phyra77853;rank=2 scaffold_27 . exon 114827 114944 . - . ID=Phyra77853.2;Parent=Phyra77853;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_27 . CDS 115330 115384 . - 0 ID=Phyra77853;Parent=Phyra77853;rank=1 scaffold_27 . exon 115330 115384 . - . ID=Phyra77853.1;Parent=Phyra77853;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . exon 109862 109948 . + . ID=Phyra94960.6;Parent=Phyra94960;constitutive=1;rank=6 scaffold_27 . exon 110013 110101 . + . ID=Phyra94960.7;Parent=Phyra94960;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_27 . exon 110170 110245 . + . ID=Phyra94960.8;Parent=Phyra94960;constitutive=1;ensembl_phase=2;rank=8 scaffold_27 . exon 110312 110608 . + . ID=Phyra94960.9;Parent=Phyra94960;constitutive=1;rank=9 scaffold_27 ensembl protein_coding_gene 117310 118671 . - . ID=Phyra94962;biotype=protein_coding;external_name=C_scaffold_27000010;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 117310 118671 . - . ID=Phyra94962;Parent=Phyra94962;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 117310 117347 . - 0 ID=Phyra94962;Parent=Phyra94962;rank=6 scaffold_27 . exon 117310 117347 . - . ID=Phyra94962.6;Parent=Phyra94962;constitutive=1;ensembl_phase=1;rank=6 scaffold_27 . CDS 117735 117848 . - 0 ID=Phyra94962;Parent=Phyra94962;rank=5 scaffold_27 . exon 117735 117848 . - . ID=Phyra94962.5;Parent=Phyra94962;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_27 . CDS 117917 118001 . - 0 ID=Phyra94962;Parent=Phyra94962;rank=4 scaffold_27 . exon 117917 118001 . - . ID=Phyra94962.4;Parent=Phyra94962;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_27 . CDS 118057 118101 . - 0 ID=Phyra94962;Parent=Phyra94962;rank=3 scaffold_27 . exon 118057 118101 . - . ID=Phyra94962.3;Parent=Phyra94962;constitutive=1;rank=3 scaffold_27 . CDS 118171 118555 . - 0 ID=Phyra94962;Parent=Phyra94962;rank=2 scaffold_27 . exon 118171 118555 . - . ID=Phyra94962.2;Parent=Phyra94962;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 118616 118671 . - 0 ID=Phyra94962;Parent=Phyra94962;rank=1 scaffold_27 . exon 118616 118671 . - . ID=Phyra94962.1;Parent=Phyra94962;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . exon 121104 122166 . + . ID=Phyra46187.2;Parent=Phyra46187;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_27 . exon 122244 122581 . + . ID=Phyra46187.3;Parent=Phyra46187;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 . repeat_region 132086 132095 . ? . description=dust scaffold_27 ensembl protein_coding_gene 148656 151406 . - . ID=Phyra77857;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000036;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 148656 151406 . - . ID=Phyra77857;Parent=Phyra77857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 148656 148850 . - 0 ID=Phyra77857;Parent=Phyra77857;rank=6 scaffold_27 . exon 148656 148850 . - . ID=Phyra77857.6;Parent=Phyra77857;constitutive=1;rank=6 scaffold_27 . CDS 148924 149044 . - 0 ID=Phyra77857;Parent=Phyra77857;rank=5 scaffold_27 . exon 148924 149044 . - . ID=Phyra77857.5;Parent=Phyra77857;constitutive=1;ensembl_phase=2;rank=5 scaffold_27 . CDS 149285 149382 . - 0 ID=Phyra77857;Parent=Phyra77857;rank=4 scaffold_27 . exon 149285 149382 . - . ID=Phyra77857.4;Parent=Phyra77857;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_27 . CDS 149454 149619 . - 0 ID=Phyra77857;Parent=Phyra77857;rank=3 scaffold_27 . exon 149454 149619 . - . ID=Phyra77857.3;Parent=Phyra77857;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 149688 149935 . - 0 ID=Phyra77857;Parent=Phyra77857;rank=2 scaffold_27 . CDS 150021 151406 . - 0 ID=Phyra77857;Parent=Phyra77857;rank=1 scaffold_27 . repeat_region 156746 156753 . ? . description=dust scaffold_27 . biological_region 157097 157102 0.999 - . logic_name=eponine scaffold_27 . repeat_region 157200 157277 . ? . description=trf scaffold_27 . exon 149688 149935 . - . ID=Phyra77857.2;Parent=Phyra77857;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_27 . exon 150021 151406 . - . ID=Phyra77857.1;Parent=Phyra77857;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 157342 158189 . + . ID=Phyra77859;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000038;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 157342 158189 . + . ID=Phyra77859;Parent=Phyra77859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 157342 157787 . + 0 ID=Phyra77859;Parent=Phyra77859;rank=1 scaffold_27 . exon 157342 157787 . + . ID=Phyra77859.1;Parent=Phyra77859;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 157859 158189 . + 0 ID=Phyra77859;Parent=Phyra77859;rank=2 scaffold_27 . exon 157859 158189 . + . ID=Phyra77859.2;Parent=Phyra77859;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 ensembl protein_coding_gene 153135 157165 . - . ID=Phyra94964;biotype=protein_coding;external_name=C_scaffold_27000012;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 153135 157165 . - . ID=Phyra94964;Parent=Phyra94964;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 153135 153149 . - 0 ID=Phyra94964;Parent=Phyra94964;rank=11 scaffold_27 . exon 153135 153149 . - . ID=Phyra94964.11;Parent=Phyra94964;constitutive=1;rank=11 scaffold_27 . CDS 153190 153354 . - 0 ID=Phyra94964;Parent=Phyra94964;rank=10 scaffold_27 . exon 153190 153354 . - . ID=Phyra94964.10;Parent=Phyra94964;constitutive=1;rank=10 scaffold_27 . CDS 153433 153716 . - 0 ID=Phyra94964;Parent=Phyra94964;rank=9 scaffold_27 . exon 153433 153716 . - . ID=Phyra94964.9;Parent=Phyra94964;constitutive=1;ensembl_phase=1;rank=9 scaffold_27 . CDS 154170 154172 . - 0 ID=Phyra94964;Parent=Phyra94964;rank=8 scaffold_27 . exon 154170 154172 . - . ID=Phyra94964.8;Parent=Phyra94964;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_27 . CDS 154545 154904 . - 0 ID=Phyra94964;Parent=Phyra94964;rank=7 scaffold_27 . exon 154545 154904 . - . ID=Phyra94964.7;Parent=Phyra94964;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_27 . CDS 154969 155064 . - 0 ID=Phyra94964;Parent=Phyra94964;rank=6 scaffold_27 . exon 154969 155064 . - . ID=Phyra94964.6;Parent=Phyra94964;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_27 . CDS 155372 155709 . - 0 ID=Phyra94964;Parent=Phyra94964;rank=5 scaffold_27 . exon 155372 155709 . - . ID=Phyra94964.5;Parent=Phyra94964;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_27 . CDS 155774 156567 . - 0 ID=Phyra94964;Parent=Phyra94964;rank=4 scaffold_27 . exon 155774 156567 . - . ID=Phyra94964.4;Parent=Phyra94964;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_27 . CDS 156592 156711 . - 0 ID=Phyra94964;Parent=Phyra94964;rank=3 scaffold_27 . exon 156592 156711 . - . ID=Phyra94964.3;Parent=Phyra94964;constitutive=1;rank=3 scaffold_27 . CDS 156806 156931 . - 0 ID=Phyra94964;Parent=Phyra94964;rank=2 scaffold_27 . exon 156806 156931 . - . ID=Phyra94964.2;Parent=Phyra94964;constitutive=1;rank=2 scaffold_27 . CDS 156959 157165 . - 0 ID=Phyra94964;Parent=Phyra94964;rank=1 scaffold_27 . exon 156959 157165 . - . ID=Phyra94964.1;Parent=Phyra94964;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 162697 164711 . + . ID=Phyra77861;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000040;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 162697 164711 . + . ID=Phyra77861;Parent=Phyra77861;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 162697 162724 . + 0 ID=Phyra77861;Parent=Phyra77861;rank=1 scaffold_27 . exon 162697 162724 . + . ID=Phyra77861.1;Parent=Phyra77861;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 162808 162913 . + 0 ID=Phyra77861;Parent=Phyra77861;rank=2 scaffold_27 . exon 162808 162913 . + . ID=Phyra77861.2;Parent=Phyra77861;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_27 . CDS 162985 163078 . + 0 ID=Phyra77861;Parent=Phyra77861;rank=3 scaffold_27 . exon 162985 163078 . + . ID=Phyra77861.3;Parent=Phyra77861;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 163194 164711 . + 0 ID=Phyra77861;Parent=Phyra77861;rank=4 scaffold_27 . exon 163194 164711 . + . ID=Phyra77861.4;Parent=Phyra77861;constitutive=1;rank=4 scaffold_27 ensembl protein_coding_gene 165427 167352 . - . ID=Phyra77862;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000041;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 165427 167352 . - . ID=Phyra77862;Parent=Phyra77862;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 165427 167063 . - 0 ID=Phyra77862;Parent=Phyra77862;rank=2 scaffold_27 . exon 165427 167063 . - . ID=Phyra77862.2;Parent=Phyra77862;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 167154 167352 . - 0 ID=Phyra77862;Parent=Phyra77862;rank=1 scaffold_27 . exon 167154 167352 . - . ID=Phyra77862.1;Parent=Phyra77862;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 168159 169838 . - . ID=Phyra77863;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000042;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 168159 169838 . - . ID=Phyra77863;Parent=Phyra77863;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 168159 169838 . - 0 ID=Phyra77863;Parent=Phyra77863;rank=1 scaffold_27 . exon 168159 169838 . - . ID=Phyra77863.1;Parent=Phyra77863;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 160301 162444 . + . ID=Phyra94965;biotype=protein_coding;external_name=C_scaffold_27000013;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 160301 162444 . + . ID=Phyra94965;Parent=Phyra94965;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 160301 160342 . + 0 ID=Phyra94965;Parent=Phyra94965;rank=1 scaffold_27 . exon 160301 160342 . + . ID=Phyra94965.1;Parent=Phyra94965;constitutive=1;rank=1 scaffold_27 . CDS 160405 160597 . + 0 ID=Phyra94965;Parent=Phyra94965;rank=2 scaffold_27 . exon 160405 160597 . + . ID=Phyra94965.2;Parent=Phyra94965;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_27 . CDS 160663 160813 . + 0 ID=Phyra94965;Parent=Phyra94965;rank=3 scaffold_27 . exon 160663 160813 . + . ID=Phyra94965.3;Parent=Phyra94965;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_27 . CDS 160890 160950 . + 0 ID=Phyra94965;Parent=Phyra94965;rank=4 scaffold_27 . exon 160890 160950 . + . ID=Phyra94965.4;Parent=Phyra94965;constitutive=1;ensembl_phase=2;rank=4 scaffold_27 . CDS 160971 161369 . + 0 ID=Phyra94965;Parent=Phyra94965;rank=5 scaffold_27 . exon 160971 161369 . + . ID=Phyra94965.5;Parent=Phyra94965;constitutive=1;rank=5 scaffold_27 . CDS 161576 161777 . + 0 ID=Phyra94965;Parent=Phyra94965;rank=6 scaffold_27 . exon 161576 161777 . + . ID=Phyra94965.6;Parent=Phyra94965;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_27 . CDS 161840 161880 . + 0 ID=Phyra94965;Parent=Phyra94965;rank=7 scaffold_27 . exon 161840 161880 . + . ID=Phyra94965.7;Parent=Phyra94965;constitutive=1;ensembl_phase=1;rank=7 scaffold_27 . CDS 161955 162275 . + 0 ID=Phyra94965;Parent=Phyra94965;rank=8 scaffold_27 . exon 161955 162275 . + . ID=Phyra94965.8;Parent=Phyra94965;constitutive=1;rank=8 scaffold_27 . CDS 162343 162444 . + 0 ID=Phyra94965;Parent=Phyra94965;rank=9 scaffold_27 . exon 162343 162444 . + . ID=Phyra94965.9;Parent=Phyra94965;constitutive=1;rank=9 scaffold_27 . biological_region 174254 174258 0.999 - . logic_name=eponine scaffold_27 . biological_region 174287 174294 0.999 - . logic_name=eponine scaffold_27 . biological_region 174894 174894 0.999 + . logic_name=eponine scaffold_27 . biological_region 174930 174934 0.999 - . logic_name=eponine scaffold_27 . biological_region 174955 174961 0.999 + . logic_name=eponine scaffold_27 . biological_region 174959 174964 0.999 - . logic_name=eponine scaffold_27 . biological_region 174968 174970 0.999 + . logic_name=eponine scaffold_27 . biological_region 174988 174990 0.999 + . logic_name=eponine scaffold_27 . biological_region 175023 175028 0.999 - . logic_name=eponine scaffold_27 . biological_region 175051 175057 0.999 - . logic_name=eponine scaffold_27 . repeat_region 177042 177049 . ? . description=dust scaffold_27 . biological_region 178022 178025 0.999 + . logic_name=eponine scaffold_27 . biological_region 178053 178053 0.999 + . logic_name=eponine scaffold_27 . biological_region 178339 178342 0.999 - . logic_name=eponine scaffold_27 . repeat_region 178567 178792 . ? . description=dust scaffold_27 ensembl protein_coding_gene 170260 172054 . + . ID=Phyra77864;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000043;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 170260 172054 . + . ID=Phyra77864;Parent=Phyra77864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 170260 171605 . + 0 ID=Phyra77864;Parent=Phyra77864;rank=1 scaffold_27 . exon 170260 171605 . + . ID=Phyra77864.1;Parent=Phyra77864;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 171732 171917 . + 0 ID=Phyra77864;Parent=Phyra77864;rank=2 scaffold_27 . exon 171732 171917 . + . ID=Phyra77864.2;Parent=Phyra77864;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_27 . CDS 171988 172054 . + 0 ID=Phyra77864;Parent=Phyra77864;rank=3 scaffold_27 . exon 171988 172054 . + . ID=Phyra77864.3;Parent=Phyra77864;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 ensembl protein_coding_gene 172377 173852 . - . ID=Phyra77865;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000044;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 172377 173852 . - . ID=Phyra77865;Parent=Phyra77865;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 172377 173852 . - 0 ID=Phyra77865;Parent=Phyra77865;rank=1 scaffold_27 . exon 172377 173852 . - . ID=Phyra77865.1;Parent=Phyra77865;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 174183 175054 . + . ID=Phyra77866;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000045;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 174183 175054 . + . ID=Phyra77866;Parent=Phyra77866;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 174183 174490 . + 0 ID=Phyra77866;Parent=Phyra77866;rank=1 scaffold_27 . exon 174183 174490 . + . ID=Phyra77866.1;Parent=Phyra77866;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 174551 174616 . + 0 ID=Phyra77866;Parent=Phyra77866;rank=2 scaffold_27 . exon 174551 174616 . + . ID=Phyra77866.2;Parent=Phyra77866;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_27 . CDS 174677 174753 . + 0 ID=Phyra77866;Parent=Phyra77866;rank=3 scaffold_27 . exon 174677 174753 . + . ID=Phyra77866.3;Parent=Phyra77866;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 174813 175054 . + 0 ID=Phyra77866;Parent=Phyra77866;rank=4 scaffold_27 . exon 174813 175054 . + . ID=Phyra77866.4;Parent=Phyra77866;constitutive=1;ensembl_phase=1;rank=4 scaffold_27 ensembl protein_coding_gene 175453 184281 . - . ID=Phyra94968;biotype=protein_coding;external_name=C_scaffold_27000016;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 175453 184281 . - . ID=Phyra94968;Parent=Phyra94968;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 175453 175539 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=22 scaffold_27 . exon 175453 175539 . - . ID=Phyra94968.22;Parent=Phyra94968;constitutive=1;rank=22 scaffold_27 . CDS 175608 175786 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=21 scaffold_27 . exon 175608 175786 . - . ID=Phyra94968.21;Parent=Phyra94968;constitutive=1;ensembl_phase=1;rank=21 scaffold_27 . CDS 176050 176095 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=20 scaffold_27 . exon 176050 176095 . - . ID=Phyra94968.20;Parent=Phyra94968;constitutive=1;ensembl_end_phase=1;rank=20 scaffold_27 . CDS 176166 176353 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=19 scaffold_27 . exon 176166 176353 . - . ID=Phyra94968.19;Parent=Phyra94968;constitutive=1;ensembl_phase=1;rank=19 scaffold_27 . CDS 176417 176486 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=18 scaffold_27 . exon 176417 176486 . - . ID=Phyra94968.18;Parent=Phyra94968;constitutive=1;ensembl_end_phase=1;rank=18 scaffold_27 . CDS 176560 176673 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=17 scaffold_27 . exon 176560 176673 . - . ID=Phyra94968.17;Parent=Phyra94968;constitutive=1;rank=17 scaffold_27 . CDS 176735 177031 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=16 scaffold_27 . exon 176735 177031 . - . ID=Phyra94968.16;Parent=Phyra94968;constitutive=1;rank=16 scaffold_27 . CDS 177109 177306 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=15 scaffold_27 . exon 177109 177306 . - . ID=Phyra94968.15;Parent=Phyra94968;constitutive=1;rank=15 scaffold_27 . CDS 177371 177418 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=14 scaffold_27 . exon 177371 177418 . - . ID=Phyra94968.14;Parent=Phyra94968;constitutive=1;rank=14 scaffold_27 . CDS 177487 177574 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=13 scaffold_27 . exon 177487 177574 . - . ID=Phyra94968.13;Parent=Phyra94968;constitutive=1;ensembl_phase=2;rank=13 scaffold_27 . CDS 177638 177792 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=12 scaffold_27 . exon 177638 177792 . - . ID=Phyra94968.12;Parent=Phyra94968;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_27 . CDS 177954 178558 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=11 scaffold_27 . exon 177954 178558 . - . ID=Phyra94968.11;Parent=Phyra94968;constitutive=1;ensembl_phase=1;rank=11 scaffold_27 . CDS 178797 180405 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=10 scaffold_27 . exon 178797 180405 . - . ID=Phyra94968.10;Parent=Phyra94968;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_27 . CDS 180442 180671 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=9 scaffold_27 . CDS 180762 181107 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=8 scaffold_27 . CDS 181405 181556 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=7 scaffold_27 . CDS 181833 181965 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=6 scaffold_27 . CDS 182014 182622 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=5 scaffold_27 . CDS 182695 183037 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=4 scaffold_27 . CDS 183398 183452 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=3 scaffold_27 . CDS 183898 183924 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=2 scaffold_27 . CDS 184020 184281 . - 0 ID=Phyra94968;Parent=Phyra94968;rank=1 scaffold_27 . exon 180442 180671 . - . ID=Phyra94968.9;Parent=Phyra94968;constitutive=1;ensembl_phase=1;rank=9 scaffold_27 . exon 180762 181107 . - . ID=Phyra94968.8;Parent=Phyra94968;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_27 . exon 181405 181556 . - . ID=Phyra94968.7;Parent=Phyra94968;constitutive=1;ensembl_phase=1;rank=7 scaffold_27 . exon 181833 181965 . - . ID=Phyra94968.6;Parent=Phyra94968;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_27 . exon 182014 182622 . - . ID=Phyra94968.5;Parent=Phyra94968;constitutive=1;rank=5 scaffold_27 . exon 182695 183037 . - . ID=Phyra94968.4;Parent=Phyra94968;constitutive=1;ensembl_phase=2;rank=4 scaffold_27 . exon 183398 183452 . - . ID=Phyra94968.3;Parent=Phyra94968;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_27 . exon 183898 183924 . - . ID=Phyra94968.2;Parent=Phyra94968;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_27 . exon 184020 184281 . - . ID=Phyra94968.1;Parent=Phyra94968;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . biological_region 194458 194459 0.999 - . logic_name=eponine scaffold_27 . biological_region 194552 194552 0.999 + . logic_name=eponine scaffold_27 . biological_region 197326 197330 0.999 + . logic_name=eponine scaffold_27 ensembl protein_coding_gene 190471 192181 . - . ID=Phyra77868;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000047;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 190471 192181 . - . ID=Phyra77868;Parent=Phyra77868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 190471 190515 . - 0 ID=Phyra77868;Parent=Phyra77868;rank=6 scaffold_27 . exon 190471 190515 . - . ID=Phyra77868.6;Parent=Phyra77868;constitutive=1;rank=6 scaffold_27 . CDS 190574 191260 . - 0 ID=Phyra77868;Parent=Phyra77868;rank=5 scaffold_27 . exon 190574 191260 . - . ID=Phyra77868.5;Parent=Phyra77868;constitutive=1;rank=5 scaffold_27 . CDS 191327 191443 . - 0 ID=Phyra77868;Parent=Phyra77868;rank=4 scaffold_27 . exon 191327 191443 . - . ID=Phyra77868.4;Parent=Phyra77868;constitutive=1;rank=4 scaffold_27 . CDS 191515 191625 . - 0 ID=Phyra77868;Parent=Phyra77868;rank=3 scaffold_27 . exon 191515 191625 . - . ID=Phyra77868.3;Parent=Phyra77868;constitutive=1;rank=3 scaffold_27 . CDS 191693 191799 . - 0 ID=Phyra77868;Parent=Phyra77868;rank=2 scaffold_27 . exon 191693 191799 . - . ID=Phyra77868.2;Parent=Phyra77868;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 191860 192181 . - 0 ID=Phyra77868;Parent=Phyra77868;rank=1 scaffold_27 . exon 191860 192181 . - . ID=Phyra77868.1;Parent=Phyra77868;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 192335 193431 . + . ID=Phyra77869;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000048;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 192335 193431 . + . ID=Phyra77869;Parent=Phyra77869;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 192335 192564 . + 0 ID=Phyra77869;Parent=Phyra77869;rank=1 scaffold_27 . exon 192335 192564 . + . ID=Phyra77869.1;Parent=Phyra77869;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 192672 192774 . + 0 ID=Phyra77869;Parent=Phyra77869;rank=2 scaffold_27 . exon 192672 192774 . + . ID=Phyra77869.2;Parent=Phyra77869;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 192845 192950 . + 0 ID=Phyra77869;Parent=Phyra77869;rank=3 scaffold_27 . exon 192845 192950 . + . ID=Phyra77869.3;Parent=Phyra77869;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_27 . CDS 193025 193199 . + 0 ID=Phyra77869;Parent=Phyra77869;rank=4 scaffold_27 . exon 193025 193199 . + . ID=Phyra77869.4;Parent=Phyra77869;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_27 . CDS 193290 193431 . + 0 ID=Phyra77869;Parent=Phyra77869;rank=5 scaffold_27 . exon 193290 193431 . + . ID=Phyra77869.5;Parent=Phyra77869;constitutive=1;ensembl_phase=2;rank=5 scaffold_27 ensembl protein_coding_gene 194156 197146 . + . ID=Phyra77870;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000049;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 194156 197146 . + . ID=Phyra77870;Parent=Phyra77870;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 194156 197146 . + 0 ID=Phyra77870;Parent=Phyra77870;rank=1 scaffold_27 . exon 194156 197146 . + . ID=Phyra77870.1;Parent=Phyra77870;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 197313 198424 . + . ID=Phyra77871;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000050;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 197313 198424 . + . ID=Phyra77871;Parent=Phyra77871;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 197313 197998 . + 0 ID=Phyra77871;Parent=Phyra77871;rank=1 scaffold_27 . exon 197313 197998 . + . ID=Phyra77871.1;Parent=Phyra77871;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 198042 198195 . + 0 ID=Phyra77871;Parent=Phyra77871;rank=2 scaffold_27 . exon 198042 198195 . + . ID=Phyra77871.2;Parent=Phyra77871;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 198281 198424 . + 0 ID=Phyra77871;Parent=Phyra77871;rank=3 scaffold_27 . exon 198281 198424 . + . ID=Phyra77871.3;Parent=Phyra77871;constitutive=1;rank=3 scaffold_27 ensembl protein_coding_gene 198656 201580 . - . ID=Phyra77872;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000051;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 198656 201580 . - . ID=Phyra77872;Parent=Phyra77872;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 198656 198697 . - 0 ID=Phyra77872;Parent=Phyra77872;rank=9 scaffold_27 . exon 198656 198697 . - . ID=Phyra77872.9;Parent=Phyra77872;constitutive=1;rank=9 scaffold_27 . CDS 198814 199416 . - 0 ID=Phyra77872;Parent=Phyra77872;rank=8 scaffold_27 . exon 198814 199416 . - . ID=Phyra77872.8;Parent=Phyra77872;constitutive=1;rank=8 scaffold_27 . CDS 199479 199742 . - 0 ID=Phyra77872;Parent=Phyra77872;rank=7 scaffold_27 . exon 199479 199742 . - . ID=Phyra77872.7;Parent=Phyra77872;constitutive=1;rank=7 scaffold_27 . CDS 199812 200003 . - 0 ID=Phyra77872;Parent=Phyra77872;rank=6 scaffold_27 . CDS 200199 200259 . - 0 ID=Phyra77872;Parent=Phyra77872;rank=5 scaffold_27 . CDS 200286 200631 . - 0 ID=Phyra77872;Parent=Phyra77872;rank=4 scaffold_27 . CDS 200697 200931 . - 0 ID=Phyra77872;Parent=Phyra77872;rank=3 scaffold_27 . CDS 201007 201083 . - 0 ID=Phyra77872;Parent=Phyra77872;rank=2 scaffold_27 . CDS 201304 201580 . - 0 ID=Phyra77872;Parent=Phyra77872;rank=1 scaffold_27 . repeat_region 202001 202023 . ? . description=trf scaffold_27 . repeat_region 203972 204059 . ? . description=trf scaffold_27 . repeat_region 204010 204061 . ? . description=dust scaffold_27 . repeat_region 204036 204059 . ? . description=trf scaffold_27 . repeat_region 205460 205500 . ? . description=trf scaffold_27 . repeat_region 206007 206064 . ? . description=dust scaffold_27 . repeat_region 206022 206064 . ? . description=trf scaffold_27 . repeat_region 206024 206053 . ? . description=trf scaffold_27 . repeat_region 206238 206262 . ? . description=trf scaffold_27 . exon 199812 200003 . - . ID=Phyra77872.6;Parent=Phyra77872;constitutive=1;rank=6 scaffold_27 . exon 200199 200259 . - . ID=Phyra77872.5;Parent=Phyra77872;constitutive=1;ensembl_phase=2;rank=5 scaffold_27 . exon 200286 200631 . - . ID=Phyra77872.4;Parent=Phyra77872;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_27 . exon 200697 200931 . - . ID=Phyra77872.3;Parent=Phyra77872;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_27 . exon 201007 201083 . - . ID=Phyra77872.2;Parent=Phyra77872;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . exon 201304 201580 . - . ID=Phyra77872.1;Parent=Phyra77872;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 203715 205658 . + . ID=Phyra77873;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000052;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 203715 205658 . + . ID=Phyra77873;Parent=Phyra77873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 203715 205658 . + 0 ID=Phyra77873;Parent=Phyra77873;rank=1 scaffold_27 . exon 203715 205658 . + . ID=Phyra77873.1;Parent=Phyra77873;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 205842 206578 . - . ID=Phyra77874;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000053;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 205842 206578 . - . ID=Phyra77874;Parent=Phyra77874;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 205842 205967 . - 0 ID=Phyra77874;Parent=Phyra77874;rank=2 scaffold_27 . exon 205842 205967 . - . ID=Phyra77874.2;Parent=Phyra77874;constitutive=1;rank=2 scaffold_27 . CDS 206000 206578 . - 0 ID=Phyra77874;Parent=Phyra77874;rank=1 scaffold_27 . exon 206000 206578 . - . ID=Phyra77874.1;Parent=Phyra77874;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 206707 214668 . - . ID=Phyra77875;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000054;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 206707 214668 . - . ID=Phyra77875;Parent=Phyra77875;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 206707 214668 . - 0 ID=Phyra77875;Parent=Phyra77875;rank=1 scaffold_27 . exon 206707 214668 . - . ID=Phyra77875.1;Parent=Phyra77875;constitutive=1;rank=1 scaffold_27 . biological_region 215496 215499 0.999 + . logic_name=eponine scaffold_27 . biological_region 215660 215663 0.999 + . logic_name=eponine scaffold_27 . biological_region 215727 215729 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 217729 218373 . + . ID=Phyra71562;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_27000008;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 217729 218373 . + . ID=Phyra71562;Parent=Phyra71562;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 217729 217786 . + 0 ID=Phyra71562;Parent=Phyra71562;rank=1 scaffold_27 . exon 217729 217786 . + . ID=Phyra71562.1;Parent=Phyra71562;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 217859 217920 . + 0 ID=Phyra71562;Parent=Phyra71562;rank=2 scaffold_27 . exon 217859 217920 . + . ID=Phyra71562.2;Parent=Phyra71562;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 217995 218076 . + 0 ID=Phyra71562;Parent=Phyra71562;rank=3 scaffold_27 . exon 217995 218076 . + . ID=Phyra71562.3;Parent=Phyra71562;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_27 . CDS 218135 218373 . + 0 ID=Phyra71562;Parent=Phyra71562;rank=4 scaffold_27 . exon 218135 218373 . + . ID=Phyra71562.4;Parent=Phyra71562;constitutive=1;ensembl_phase=1;rank=4 scaffold_27 ensembl protein_coding_gene 214938 215897 . - . ID=Phyra77876;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000055;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 214938 215897 . - . ID=Phyra77876;Parent=Phyra77876;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 214938 215897 . - 0 ID=Phyra77876;Parent=Phyra77876;rank=1 scaffold_27 . exon 214938 215897 . - . ID=Phyra77876.1;Parent=Phyra77876;constitutive=1;rank=1 scaffold_27 . repeat_region 220511 220544 . ? . description=dust scaffold_27 . repeat_region 224251 224278 . ? . description=trf scaffold_27 . repeat_region 225486 225512 . ? . description=trf scaffold_27 . repeat_region 225848 225864 . ? . description=dust scaffold_27 . repeat_region 226140 226147 . ? . description=dust scaffold_27 . repeat_region 227180 227191 . ? . description=dust scaffold_27 ensembl protein_coding_gene 220298 220615 . + . ID=Phyra77878;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000057;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 220298 220615 . + . ID=Phyra77878;Parent=Phyra77878;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 220298 220615 . + 0 ID=Phyra77878;Parent=Phyra77878;rank=1 scaffold_27 . exon 220298 220615 . + . ID=Phyra77878.1;Parent=Phyra77878;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 221438 225041 . - . ID=Phyra94974;biotype=protein_coding;external_name=C_scaffold_27000022;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 221438 225041 . - . ID=Phyra94974;Parent=Phyra94974;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 221438 223579 . - 0 ID=Phyra94974;Parent=Phyra94974;rank=5 scaffold_27 . exon 221438 223579 . - . ID=Phyra94974.5;Parent=Phyra94974;constitutive=1;rank=5 scaffold_27 . CDS 223738 224025 . - 0 ID=Phyra94974;Parent=Phyra94974;rank=4 scaffold_27 . exon 223738 224025 . - . ID=Phyra94974.4;Parent=Phyra94974;constitutive=1;rank=4 scaffold_27 . CDS 224298 224389 . - 0 ID=Phyra94974;Parent=Phyra94974;rank=3 scaffold_27 . exon 224298 224389 . - . ID=Phyra94974.3;Parent=Phyra94974;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 . CDS 224423 224689 . - 0 ID=Phyra94974;Parent=Phyra94974;rank=2 scaffold_27 . exon 224423 224689 . - . ID=Phyra94974.2;Parent=Phyra94974;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 224723 225041 . - 0 ID=Phyra94974;Parent=Phyra94974;rank=1 scaffold_27 . exon 224723 225041 . - . ID=Phyra94974.1;Parent=Phyra94974;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 225918 227934 . + . ID=Phyra94975;biotype=protein_coding;external_name=C_scaffold_27000023;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 225918 227934 . + . ID=Phyra94975;Parent=Phyra94975;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 225918 225972 . + 0 ID=Phyra94975;Parent=Phyra94975;rank=1 scaffold_27 . exon 225918 225972 . + . ID=Phyra94975.1;Parent=Phyra94975;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 226049 226122 . + 0 ID=Phyra94975;Parent=Phyra94975;rank=2 scaffold_27 . exon 226049 226122 . + . ID=Phyra94975.2;Parent=Phyra94975;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 226213 226508 . + 0 ID=Phyra94975;Parent=Phyra94975;rank=3 scaffold_27 . exon 226213 226508 . + . ID=Phyra94975.3;Parent=Phyra94975;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_27 . CDS 226635 226672 . + 0 ID=Phyra94975;Parent=Phyra94975;rank=4 scaffold_27 . exon 226635 226672 . + . ID=Phyra94975.4;Parent=Phyra94975;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_27 . CDS 226741 227058 . + 0 ID=Phyra94975;Parent=Phyra94975;rank=5 scaffold_27 . exon 226741 227058 . + . ID=Phyra94975.5;Parent=Phyra94975;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_27 . CDS 227428 227747 . + 0 ID=Phyra94975;Parent=Phyra94975;rank=6 scaffold_27 . exon 227428 227747 . + . ID=Phyra94975.6;Parent=Phyra94975;constitutive=1;ensembl_phase=1;rank=6 scaffold_27 . CDS 227827 227934 . + 0 ID=Phyra94975;Parent=Phyra94975;rank=7 scaffold_27 . exon 227827 227934 . + . ID=Phyra94975.7;Parent=Phyra94975;constitutive=1;rank=7 scaffold_27 ensembl protein_coding_gene 228217 229880 . - . ID=Phyra94976;biotype=protein_coding;external_name=C_scaffold_27000024;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 228217 229880 . - . ID=Phyra94976;Parent=Phyra94976;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 228217 228471 . - 0 ID=Phyra94976;Parent=Phyra94976;rank=3 scaffold_27 . exon 228217 228471 . - . ID=Phyra94976.3;Parent=Phyra94976;constitutive=1;rank=3 scaffold_27 . CDS 228517 228615 . - 0 ID=Phyra94976;Parent=Phyra94976;rank=2 scaffold_27 . exon 228517 228615 . - . ID=Phyra94976.2;Parent=Phyra94976;constitutive=1;rank=2 scaffold_27 . CDS 228694 229878 . - 0 ID=Phyra94976;Parent=Phyra94976;rank=1 scaffold_27 . exon 228694 229880 . - . ID=Phyra94976.1;Parent=Phyra94976;constitutive=1;ensembl_phase=-1;rank=1 scaffold_27 . biological_region 233213 233215 0.999 - . logic_name=eponine scaffold_27 . biological_region 233268 233272 0.999 + . logic_name=eponine scaffold_27 . biological_region 233318 233319 0.999 - . logic_name=eponine scaffold_27 . biological_region 234027 234031 0.999 - . logic_name=eponine scaffold_27 . biological_region 234082 234088 0.999 + . logic_name=eponine scaffold_27 . biological_region 234101 234111 0.999 + . logic_name=eponine scaffold_27 . biological_region 234192 234197 0.999 + . logic_name=eponine scaffold_27 . biological_region 234233 234237 0.999 - . logic_name=eponine scaffold_27 . biological_region 234250 234254 0.999 - . logic_name=eponine scaffold_27 . biological_region 234271 234274 0.999 + . logic_name=eponine scaffold_27 . biological_region 234275 234280 0.999 - . logic_name=eponine scaffold_27 . biological_region 234306 234310 0.999 + . logic_name=eponine scaffold_27 . biological_region 234314 234318 0.999 + . logic_name=eponine scaffold_27 . biological_region 234319 234325 0.999 - . logic_name=eponine scaffold_27 . biological_region 234331 234331 0.999 + . logic_name=eponine scaffold_27 . biological_region 234373 234382 0.999 + . logic_name=eponine scaffold_27 . biological_region 234538 234545 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 230753 231685 . - . ID=Phyra77882;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000061;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 230753 231685 . - . ID=Phyra77882;Parent=Phyra77882;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 230753 230773 . - 0 ID=Phyra77882;Parent=Phyra77882;rank=3 scaffold_27 . exon 230753 230773 . - . ID=Phyra77882.3;Parent=Phyra77882;constitutive=1;rank=3 scaffold_27 . CDS 231016 231402 . - 0 ID=Phyra77882;Parent=Phyra77882;rank=2 scaffold_27 . exon 231016 231402 . - . ID=Phyra77882.2;Parent=Phyra77882;constitutive=1;rank=2 scaffold_27 . CDS 231473 231685 . - 0 ID=Phyra77882;Parent=Phyra77882;rank=1 scaffold_27 . exon 231473 231685 . - . ID=Phyra77882.1;Parent=Phyra77882;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 232718 234478 . - . ID=Phyra77883;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000062;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 232718 234478 . - . ID=Phyra77883;Parent=Phyra77883;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 232718 234478 . - 0 ID=Phyra77883;Parent=Phyra77883;rank=1 scaffold_27 . exon 232718 234478 . - . ID=Phyra77883.1;Parent=Phyra77883;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 235940 236453 . + . ID=Phyra77884;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000063;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 235940 236453 . + . ID=Phyra77884;Parent=Phyra77884;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 235940 236296 . + 0 ID=Phyra77884;Parent=Phyra77884;rank=1 scaffold_27 . exon 235940 236296 . + . ID=Phyra77884.1;Parent=Phyra77884;constitutive=1;rank=1 scaffold_27 . CDS 236412 236453 . + 0 ID=Phyra77884;Parent=Phyra77884;rank=2 scaffold_27 . exon 236412 236453 . + . ID=Phyra77884.2;Parent=Phyra77884;constitutive=1;rank=2 scaffold_27 . repeat_region 240660 240672 . ? . description=dust scaffold_27 . repeat_region 241280 241312 . ? . description=trf scaffold_27 . repeat_region 243605 243639 . ? . description=trf scaffold_27 . repeat_region 244833 244854 . ? . description=trf scaffold_27 . repeat_region 246074 246102 . ? . description=trf scaffold_27 . repeat_region 246074 246102 . ? . description=dust scaffold_27 . repeat_region 246468 246593 . ? . description=trf scaffold_27 . repeat_region 246469 246593 . ? . description=trf scaffold_27 . repeat_region 246504 246593 . ? . description=trf scaffold_27 . repeat_region 246925 247046 . ? . description=trf scaffold_27 . repeat_region 246971 247017 . ? . description=trf scaffold_27 ensembl protein_coding_gene 245963 247826 . + . ID=Phyra77885;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000064;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 245963 247826 . + . ID=Phyra77885;Parent=Phyra77885;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 245963 245982 . + 0 ID=Phyra77885;Parent=Phyra77885;rank=1 scaffold_27 . exon 245963 245982 . + . ID=Phyra77885.1;Parent=Phyra77885;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 246041 246286 . + 0 ID=Phyra77885;Parent=Phyra77885;rank=2 scaffold_27 . exon 246041 246286 . + . ID=Phyra77885.2;Parent=Phyra77885;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_27 . CDS 246404 247826 . + 0 ID=Phyra77885;Parent=Phyra77885;rank=3 scaffold_27 . exon 246404 247826 . + . ID=Phyra77885.3;Parent=Phyra77885;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 ensembl protein_coding_gene 248777 253294 . - . ID=Phyra94977;biotype=protein_coding;external_name=C_scaffold_27000025;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 248777 253294 . - . ID=Phyra94977;Parent=Phyra94977;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 248777 248842 . - 0 ID=Phyra94977;Parent=Phyra94977;rank=14 scaffold_27 . exon 248777 248842 . - . ID=Phyra94977.14;Parent=Phyra94977;constitutive=1;rank=14 scaffold_27 . CDS 248885 249043 . - 0 ID=Phyra94977;Parent=Phyra94977;rank=13 scaffold_27 . exon 248885 249043 . - . ID=Phyra94977.13;Parent=Phyra94977;constitutive=1;rank=13 scaffold_27 . CDS 249123 249174 . - 0 ID=Phyra94977;Parent=Phyra94977;rank=12 scaffold_27 . exon 249123 249174 . - . ID=Phyra94977.12;Parent=Phyra94977;constitutive=1;ensembl_phase=2;rank=12 scaffold_27 . CDS 249254 249388 . - 0 ID=Phyra94977;Parent=Phyra94977;rank=11 scaffold_27 . exon 249254 249388 . - . ID=Phyra94977.11;Parent=Phyra94977;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_27 . CDS 249481 249564 . - 0 ID=Phyra94977;Parent=Phyra94977;rank=10 scaffold_27 . CDS 249649 249780 . - 0 ID=Phyra94977;Parent=Phyra94977;rank=9 scaffold_27 . CDS 249858 250326 . - 0 ID=Phyra94977;Parent=Phyra94977;rank=8 scaffold_27 . CDS 250420 250503 . - 0 ID=Phyra94977;Parent=Phyra94977;rank=7 scaffold_27 . CDS 250540 250759 . - 0 ID=Phyra94977;Parent=Phyra94977;rank=6 scaffold_27 . CDS 250835 251169 . - 0 ID=Phyra94977;Parent=Phyra94977;rank=5 scaffold_27 . CDS 251335 251768 . - 0 ID=Phyra94977;Parent=Phyra94977;rank=4 scaffold_27 . CDS 251868 252616 . - 0 ID=Phyra94977;Parent=Phyra94977;rank=3 scaffold_27 . CDS 252638 252993 . - 0 ID=Phyra94977;Parent=Phyra94977;rank=2 scaffold_27 . CDS 253066 253294 . - 0 ID=Phyra94977;Parent=Phyra94977;rank=1 scaffold_27 . biological_region 252840 252843 0.999 - . logic_name=eponine scaffold_27 . biological_region 252897 252901 0.999 - . logic_name=eponine scaffold_27 . biological_region 257533 257534 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 254917 256046 . - . ID=Phyra77887;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000066;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 254917 256046 . - . ID=Phyra77887;Parent=Phyra77887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 254917 255913 . - 0 ID=Phyra77887;Parent=Phyra77887;rank=2 scaffold_27 . exon 254917 255913 . - . ID=Phyra77887.2;Parent=Phyra77887;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 255967 256046 . - 0 ID=Phyra77887;Parent=Phyra77887;rank=1 scaffold_27 . exon 255967 256046 . - . ID=Phyra77887.1;Parent=Phyra77887;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . exon 249481 249564 . - . ID=Phyra94977.10;Parent=Phyra94977;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_27 . exon 249649 249780 . - . ID=Phyra94977.9;Parent=Phyra94977;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_27 . exon 249858 250326 . - . ID=Phyra94977.8;Parent=Phyra94977;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_27 . exon 250420 250503 . - . ID=Phyra94977.7;Parent=Phyra94977;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_27 . exon 250540 250759 . - . ID=Phyra94977.6;Parent=Phyra94977;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_27 . exon 250835 251169 . - . ID=Phyra94977.5;Parent=Phyra94977;constitutive=1;ensembl_phase=1;rank=5 scaffold_27 . exon 251335 251768 . - . ID=Phyra94977.4;Parent=Phyra94977;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_27 . exon 251868 252616 . - . ID=Phyra94977.3;Parent=Phyra94977;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_27 . exon 252638 252993 . - . ID=Phyra94977.2;Parent=Phyra94977;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . exon 253066 253294 . - . ID=Phyra94977.1;Parent=Phyra94977;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 254114 254406 . - . ID=Phyra94978;biotype=protein_coding;external_name=C_scaffold_27000026;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 254114 254406 . - . ID=Phyra94978;Parent=Phyra94978;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 254114 254244 . - 0 ID=Phyra94978;Parent=Phyra94978;rank=2 scaffold_27 . exon 254114 254244 . - . ID=Phyra94978.2;Parent=Phyra94978;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 254322 254406 . - 0 ID=Phyra94978;Parent=Phyra94978;rank=1 scaffold_27 . exon 254322 254406 . - . ID=Phyra94978.1;Parent=Phyra94978;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 256656 257533 . + . ID=Phyra94979;biotype=protein_coding;external_name=C_scaffold_27000027;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 256656 257533 . + . ID=Phyra94979;Parent=Phyra94979;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 256656 256945 . + 0 ID=Phyra94979;Parent=Phyra94979;rank=1 scaffold_27 . exon 256656 256945 . + . ID=Phyra94979.1;Parent=Phyra94979;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 256986 257441 . + 0 ID=Phyra94979;Parent=Phyra94979;rank=2 scaffold_27 . exon 256986 257441 . + . ID=Phyra94979.2;Parent=Phyra94979;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_27 . CDS 257488 257533 . + 0 ID=Phyra94979;Parent=Phyra94979;rank=3 scaffold_27 . exon 257488 257533 . + . ID=Phyra94979.3;Parent=Phyra94979;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . repeat_region 262611 262653 . ? . description=trf scaffold_27 . repeat_region 262611 262661 . ? . description=trf scaffold_27 ensembl protein_coding_gene 266456 278467 . + . ID=Phyra46083;biotype=protein_coding;external_name=gwEuk.27.26.1;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 266456 278467 . + . ID=Phyra46083;Parent=Phyra46083;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 266456 267436 . + 0 ID=Phyra46083;Parent=Phyra46083;rank=1 scaffold_27 . exon 266456 267436 . + . ID=Phyra46083.1;Parent=Phyra46083;constitutive=1;rank=1 scaffold_27 . CDS 267617 267893 . + 0 ID=Phyra46083;Parent=Phyra46083;rank=2 scaffold_27 . exon 267617 267893 . + . ID=Phyra46083.2;Parent=Phyra46083;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_27 . CDS 267939 278467 . + 0 ID=Phyra46083;Parent=Phyra46083;rank=3 scaffold_27 . exon 267939 278467 . + . ID=Phyra46083.3;Parent=Phyra46083;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 ensembl protein_coding_gene 260722 261727 . - . ID=Phyra77889;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000068;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 260722 261727 . - . ID=Phyra77889;Parent=Phyra77889;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 260722 261276 . - 0 ID=Phyra77889;Parent=Phyra77889;rank=2 scaffold_27 . exon 260722 261276 . - . ID=Phyra77889.2;Parent=Phyra77889;constitutive=1;rank=2 scaffold_27 . CDS 261341 261727 . - 0 ID=Phyra77889;Parent=Phyra77889;rank=1 scaffold_27 . exon 261341 261727 . - . ID=Phyra77889.1;Parent=Phyra77889;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 261867 262451 . + . ID=Phyra77890;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000069;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 261867 262451 . + . ID=Phyra77890;Parent=Phyra77890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 261867 262451 . + 0 ID=Phyra77890;Parent=Phyra77890;rank=1 scaffold_27 . exon 261867 262451 . + . ID=Phyra77890.1;Parent=Phyra77890;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 262686 265401 . + . ID=Phyra77891;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000070;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 262686 265401 . + . ID=Phyra77891;Parent=Phyra77891;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 262686 265115 . + 0 ID=Phyra77891;Parent=Phyra77891;rank=1 scaffold_27 . exon 262686 265115 . + . ID=Phyra77891.1;Parent=Phyra77891;constitutive=1;rank=1 scaffold_27 . CDS 265186 265401 . + 0 ID=Phyra77891;Parent=Phyra77891;rank=2 scaffold_27 . exon 265186 265401 . + . ID=Phyra77891.2;Parent=Phyra77891;constitutive=1;rank=2 scaffold_27 . biological_region 275889 275890 0.999 + . logic_name=eponine scaffold_27 . biological_region 278047 278050 0.999 + . logic_name=eponine scaffold_27 . biological_region 278952 278955 0.999 - . logic_name=eponine scaffold_27 . biological_region 279007 279010 0.999 + . logic_name=eponine scaffold_27 . biological_region 279027 279029 0.999 + . logic_name=eponine scaffold_27 ensembl protein_coding_gene 278748 280174 . - . ID=Phyra77897;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000076;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 278748 280174 . - . ID=Phyra77897;Parent=Phyra77897;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 278748 279402 . - 0 ID=Phyra77897;Parent=Phyra77897;rank=4 scaffold_27 . exon 278748 279402 . - . ID=Phyra77897.4;Parent=Phyra77897;constitutive=1;ensembl_phase=2;rank=4 scaffold_27 . CDS 279469 279688 . - 0 ID=Phyra77897;Parent=Phyra77897;rank=3 scaffold_27 . CDS 279930 280007 . - 0 ID=Phyra77897;Parent=Phyra77897;rank=2 scaffold_27 . CDS 280129 280174 . - 0 ID=Phyra77897;Parent=Phyra77897;rank=1 scaffold_27 . repeat_region 283394 283410 . ? . description=dust scaffold_27 . repeat_region 286853 286860 . ? . description=dust scaffold_27 ensembl protein_coding_gene 283419 284177 . + . ID=Phyra46092;biotype=protein_coding;external_name=gwEuk.27.35.1;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 283419 284177 . + . ID=Phyra46092;Parent=Phyra46092;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 283419 284177 . + 0 ID=Phyra46092;Parent=Phyra46092;rank=1 scaffold_27 . exon 283419 284177 . + . ID=Phyra46092.1;Parent=Phyra46092;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 286021 288754 . + . ID=Phyra46097;biotype=protein_coding;external_name=gwEuk.27.40.1;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 286021 288754 . + . ID=Phyra46097;Parent=Phyra46097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 286021 286617 . + 0 ID=Phyra46097;Parent=Phyra46097;rank=1 scaffold_27 . exon 286021 286617 . + . ID=Phyra46097.1;Parent=Phyra46097;constitutive=1;rank=1 scaffold_27 . CDS 288203 288754 . + 0 ID=Phyra46097;Parent=Phyra46097;rank=2 scaffold_27 . exon 288203 288754 . + . ID=Phyra46097.2;Parent=Phyra46097;constitutive=1;rank=2 scaffold_27 . exon 279469 279688 . - . ID=Phyra77897.3;Parent=Phyra77897;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_27 . exon 279930 280007 . - . ID=Phyra77897.2;Parent=Phyra77897;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_27 . exon 280129 280174 . - . ID=Phyra77897.1;Parent=Phyra77897;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 281275 282885 . + . ID=Phyra77898;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000077;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 281275 282885 . + . ID=Phyra77898;Parent=Phyra77898;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 281275 282885 . + 0 ID=Phyra77898;Parent=Phyra77898;rank=1 scaffold_27 . exon 281275 282885 . + . ID=Phyra77898.1;Parent=Phyra77898;constitutive=1;rank=1 scaffold_27 . repeat_region 289651 289706 . ? . description=trf scaffold_27 . biological_region 289668 289670 0.999 + . logic_name=eponine scaffold_27 . biological_region 289762 289766 0.999 - . logic_name=eponine scaffold_27 . biological_region 289823 289826 0.999 - . logic_name=eponine scaffold_27 . biological_region 289903 289905 0.999 + . logic_name=eponine scaffold_27 . biological_region 289947 289948 0.999 + . logic_name=eponine scaffold_27 . biological_region 289991 290004 0.999 + . logic_name=eponine scaffold_27 . biological_region 290038 290046 0.999 - . logic_name=eponine scaffold_27 . biological_region 290069 290076 0.999 - . logic_name=eponine scaffold_27 . biological_region 290070 290073 0.999 + . logic_name=eponine scaffold_27 . biological_region 290105 290117 0.999 - . logic_name=eponine scaffold_27 . biological_region 290120 290126 0.999 + . logic_name=eponine scaffold_27 . biological_region 290134 290145 0.999 - . logic_name=eponine scaffold_27 . biological_region 290928 290930 0.999 - . logic_name=eponine scaffold_27 . biological_region 294636 294638 0.999 + . logic_name=eponine scaffold_27 . biological_region 295143 295144 0.999 + . logic_name=eponine scaffold_27 . biological_region 295958 295959 0.999 + . logic_name=eponine scaffold_27 . repeat_region 298128 298178 . ? . description=trf scaffold_27 . repeat_region 298135 298175 . ? . description=trf scaffold_27 ensembl protein_coding_gene 289681 290235 . - . ID=Phyra46108;biotype=protein_coding;external_name=gwEuk.27.51.1;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 289681 290235 . - . ID=Phyra46108;Parent=Phyra46108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 289681 290235 . - 0 ID=Phyra46108;Parent=Phyra46108;rank=1 scaffold_27 . exon 289681 290235 . - . ID=Phyra46108.1;Parent=Phyra46108;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 290444 292144 . - . ID=Phyra77901;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000080;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 290444 292144 . - . ID=Phyra77901;Parent=Phyra77901;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 290444 292144 . - 0 ID=Phyra77901;Parent=Phyra77901;rank=1 scaffold_27 . exon 290444 292144 . - . ID=Phyra77901.1;Parent=Phyra77901;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 293233 294483 . - . ID=Phyra77902;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000081;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 293233 294483 . - . ID=Phyra77902;Parent=Phyra77902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 293233 293340 . - 0 ID=Phyra77902;Parent=Phyra77902;rank=4 scaffold_27 . exon 293233 293340 . - . ID=Phyra77902.4;Parent=Phyra77902;constitutive=1;rank=4 scaffold_27 . CDS 293422 293730 . - 0 ID=Phyra77902;Parent=Phyra77902;rank=3 scaffold_27 . exon 293422 293730 . - . ID=Phyra77902.3;Parent=Phyra77902;constitutive=1;rank=3 scaffold_27 . CDS 293939 294101 . - 0 ID=Phyra77902;Parent=Phyra77902;rank=2 scaffold_27 . exon 293939 294101 . - . ID=Phyra77902.2;Parent=Phyra77902;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 294173 294483 . - 0 ID=Phyra77902;Parent=Phyra77902;rank=1 scaffold_27 . exon 294173 294483 . - . ID=Phyra77902.1;Parent=Phyra77902;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 ensembl protein_coding_gene 294709 298354 . + . ID=Phyra77903;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000082;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 294709 298354 . + . ID=Phyra77903;Parent=Phyra77903;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 294709 295634 . + 0 ID=Phyra77903;Parent=Phyra77903;rank=1 scaffold_27 . exon 294709 295634 . + . ID=Phyra77903.1;Parent=Phyra77903;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 295740 295844 . + 0 ID=Phyra77903;Parent=Phyra77903;rank=2 scaffold_27 . exon 295740 295844 . + . ID=Phyra77903.2;Parent=Phyra77903;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_27 . CDS 295923 298201 . + 0 ID=Phyra77903;Parent=Phyra77903;rank=3 scaffold_27 . exon 295923 298201 . + . ID=Phyra77903.3;Parent=Phyra77903;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 298242 298354 . + 0 ID=Phyra77903;Parent=Phyra77903;rank=4 scaffold_27 . exon 298242 298354 . + . ID=Phyra77903.4;Parent=Phyra77903;constitutive=1;ensembl_phase=1;rank=4 scaffold_27 ensembl protein_coding_gene 300022 301640 . + . ID=Phyra77904;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000083;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 300022 301640 . + . ID=Phyra77904;Parent=Phyra77904;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 300022 301107 . + 0 ID=Phyra77904;Parent=Phyra77904;rank=1 scaffold_27 . exon 300022 301107 . + . ID=Phyra77904.1;Parent=Phyra77904;constitutive=1;rank=1 scaffold_27 . CDS 301191 301276 . + 0 ID=Phyra77904;Parent=Phyra77904;rank=2 scaffold_27 . exon 301191 301276 . + . ID=Phyra77904.2;Parent=Phyra77904;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_27 . CDS 301324 301410 . + 0 ID=Phyra77904;Parent=Phyra77904;rank=3 scaffold_27 . exon 301324 301410 . + . ID=Phyra77904.3;Parent=Phyra77904;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_27 . CDS 301448 301640 . + 0 ID=Phyra77904;Parent=Phyra77904;rank=4 scaffold_27 . exon 301448 301640 . + . ID=Phyra77904.4;Parent=Phyra77904;constitutive=1;ensembl_phase=2;rank=4 scaffold_27 ensembl protein_coding_gene 301820 303820 . - . ID=Phyra77905;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000084;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 301820 303820 . - . ID=Phyra77905;Parent=Phyra77905;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 301820 303820 . - 0 ID=Phyra77905;Parent=Phyra77905;rank=1 scaffold_27 . exon 301820 303820 . - . ID=Phyra77905.1;Parent=Phyra77905;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 305584 307563 . + . ID=Phyra77906;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000085;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 305584 307563 . + . ID=Phyra77906;Parent=Phyra77906;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 305584 307563 . + 0 ID=Phyra77906;Parent=Phyra77906;rank=1 scaffold_27 . exon 305584 307563 . + . ID=Phyra77906.1;Parent=Phyra77906;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 307892 308278 . + . ID=Phyra77907;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000086;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 307892 308278 . + . ID=Phyra77907;Parent=Phyra77907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 307892 308278 . + 0 ID=Phyra77907;Parent=Phyra77907;rank=1 scaffold_27 . exon 307892 308278 . + . ID=Phyra77907.1;Parent=Phyra77907;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 308684 310774 . - . ID=Phyra77908;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000087;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 308684 310774 . - . ID=Phyra77908;Parent=Phyra77908;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 308684 310774 . - 0 ID=Phyra77908;Parent=Phyra77908;rank=1 scaffold_27 . exon 308684 310774 . - . ID=Phyra77908.1;Parent=Phyra77908;constitutive=1;rank=1 scaffold_27 . repeat_region 309467 309493 . ? . description=trf scaffold_27 . biological_region 315002 315004 0.999 + . logic_name=eponine scaffold_27 . biological_region 315651 315654 0.999 + . logic_name=eponine scaffold_27 . biological_region 315752 315754 0.999 - . logic_name=eponine scaffold_27 . repeat_region 316173 316222 . ? . description=dust scaffold_27 . repeat_region 317212 317275 . ? . description=dust scaffold_27 . repeat_region 318277 318326 . ? . description=dust scaffold_27 . biological_region 318758 318760 0.999 + . logic_name=eponine scaffold_27 ensembl protein_coding_gene 312445 313668 . - . ID=Phyra77909;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000088;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 312445 313668 . - . ID=Phyra77909;Parent=Phyra77909;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 312445 312507 . - 0 ID=Phyra77909;Parent=Phyra77909;rank=6 scaffold_27 . exon 312445 312507 . - . ID=Phyra77909.6;Parent=Phyra77909;constitutive=1;rank=6 scaffold_27 . CDS 312587 312694 . - 0 ID=Phyra77909;Parent=Phyra77909;rank=5 scaffold_27 . exon 312587 312694 . - . ID=Phyra77909.5;Parent=Phyra77909;constitutive=1;rank=5 scaffold_27 . CDS 312773 312829 . - 0 ID=Phyra77909;Parent=Phyra77909;rank=4 scaffold_27 . exon 312773 312829 . - . ID=Phyra77909.4;Parent=Phyra77909;constitutive=1;rank=4 scaffold_27 . CDS 312900 313049 . - 0 ID=Phyra77909;Parent=Phyra77909;rank=3 scaffold_27 . exon 312900 313049 . - . ID=Phyra77909.3;Parent=Phyra77909;constitutive=1;rank=3 scaffold_27 . CDS 313098 313216 . - 0 ID=Phyra77909;Parent=Phyra77909;rank=2 scaffold_27 . exon 313098 313216 . - . ID=Phyra77909.2;Parent=Phyra77909;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 313296 313668 . - 0 ID=Phyra77909;Parent=Phyra77909;rank=1 scaffold_27 . exon 313296 313668 . - . ID=Phyra77909.1;Parent=Phyra77909;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 314572 315956 . + . ID=Phyra77910;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000089;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 314572 315956 . + . ID=Phyra77910;Parent=Phyra77910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 314572 314685 . + 0 ID=Phyra77910;Parent=Phyra77910;rank=1 scaffold_27 . exon 314572 314685 . + . ID=Phyra77910.1;Parent=Phyra77910;constitutive=1;rank=1 scaffold_27 . CDS 314757 315956 . + 0 ID=Phyra77910;Parent=Phyra77910;rank=2 scaffold_27 . exon 314757 315956 . + . ID=Phyra77910.2;Parent=Phyra77910;constitutive=1;rank=2 scaffold_27 ensembl protein_coding_gene 318769 320226 . - . ID=Phyra77911;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000090;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 318769 320226 . - . ID=Phyra77911;Parent=Phyra77911;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 318769 319369 . - 0 ID=Phyra77911;Parent=Phyra77911;rank=3 scaffold_27 . exon 318769 319369 . - . ID=Phyra77911.3;Parent=Phyra77911;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 319443 320047 . - 0 ID=Phyra77911;Parent=Phyra77911;rank=2 scaffold_27 . CDS 320104 320226 . - 0 ID=Phyra77911;Parent=Phyra77911;rank=1 scaffold_27 . exon 319443 320047 . - . ID=Phyra77911.2;Parent=Phyra77911;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_27 . exon 320104 320226 . - . ID=Phyra77911.1;Parent=Phyra77911;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 321293 324933 . - . ID=Phyra77912;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000091;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 321293 324933 . - . ID=Phyra77912;Parent=Phyra77912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 321293 321456 . - 0 ID=Phyra77912;Parent=Phyra77912;rank=6 scaffold_27 . exon 321293 321456 . - . ID=Phyra77912.6;Parent=Phyra77912;constitutive=1;ensembl_phase=1;rank=6 scaffold_27 . CDS 321619 322283 . - 0 ID=Phyra77912;Parent=Phyra77912;rank=5 scaffold_27 . exon 321619 322283 . - . ID=Phyra77912.5;Parent=Phyra77912;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_27 . CDS 322363 322673 . - 0 ID=Phyra77912;Parent=Phyra77912;rank=4 scaffold_27 . exon 322363 322673 . - . ID=Phyra77912.4;Parent=Phyra77912;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_27 . CDS 322762 324193 . - 0 ID=Phyra77912;Parent=Phyra77912;rank=3 scaffold_27 . exon 322762 324193 . - . ID=Phyra77912.3;Parent=Phyra77912;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 324263 324804 . - 0 ID=Phyra77912;Parent=Phyra77912;rank=2 scaffold_27 . exon 324263 324804 . - . ID=Phyra77912.2;Parent=Phyra77912;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_27 . CDS 324880 324933 . - 0 ID=Phyra77912;Parent=Phyra77912;rank=1 scaffold_27 . exon 324880 324933 . - . ID=Phyra77912.1;Parent=Phyra77912;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 327397 328872 . - . ID=Phyra77914;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000093;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 327397 328872 . - . ID=Phyra77914;Parent=Phyra77914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 327397 328872 . - 0 ID=Phyra77914;Parent=Phyra77914;rank=1 scaffold_27 . exon 327397 328872 . - . ID=Phyra77914.1;Parent=Phyra77914;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 325106 327316 . + . ID=Phyra94986;biotype=protein_coding;external_name=C_scaffold_27000034;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 325106 327316 . + . ID=Phyra94986;Parent=Phyra94986;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 325106 325349 . + 0 ID=Phyra94986;Parent=Phyra94986;rank=1 scaffold_27 . exon 325106 325349 . + . ID=Phyra94986.1;Parent=Phyra94986;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 325401 325619 . + 0 ID=Phyra94986;Parent=Phyra94986;rank=2 scaffold_27 . exon 325401 325619 . + . ID=Phyra94986.2;Parent=Phyra94986;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 325647 326257 . + 0 ID=Phyra94986;Parent=Phyra94986;rank=3 scaffold_27 . exon 325647 326257 . + . ID=Phyra94986.3;Parent=Phyra94986;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 . CDS 326375 326580 . + 0 ID=Phyra94986;Parent=Phyra94986;rank=4 scaffold_27 . exon 326375 326580 . + . ID=Phyra94986.4;Parent=Phyra94986;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_27 . CDS 326708 326788 . + 0 ID=Phyra94986;Parent=Phyra94986;rank=5 scaffold_27 . exon 326708 326788 . + . ID=Phyra94986.5;Parent=Phyra94986;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_27 . CDS 326830 327039 . + 0 ID=Phyra94986;Parent=Phyra94986;rank=6 scaffold_27 . exon 326830 327039 . + . ID=Phyra94986.6;Parent=Phyra94986;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_27 . CDS 327217 327316 . + 0 ID=Phyra94986;Parent=Phyra94986;rank=7 scaffold_27 . exon 327217 327316 . + . ID=Phyra94986.7;Parent=Phyra94986;constitutive=1;ensembl_phase=2;rank=7 scaffold_27 . repeat_region 329370 329395 . ? . description=trf scaffold_27 . biological_region 331022 331024 0.999 - . logic_name=eponine scaffold_27 . repeat_region 332040 332502 . ? . description=dust scaffold_27 . biological_region 339160 339164 0.999 + . logic_name=eponine scaffold_27 ensembl protein_coding_gene 333317 335615 . - . ID=Phyra77915;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000094;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 333317 335615 . - . ID=Phyra77915;Parent=Phyra77915;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 333317 333409 . - 0 ID=Phyra77915;Parent=Phyra77915;rank=2 scaffold_27 . exon 333317 333409 . - . ID=Phyra77915.2;Parent=Phyra77915;constitutive=1;rank=2 scaffold_27 . CDS 333486 335615 . - 0 ID=Phyra77915;Parent=Phyra77915;rank=1 scaffold_27 . exon 333486 335615 . - . ID=Phyra77915.1;Parent=Phyra77915;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 336660 339942 . + . ID=Phyra77916;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000095;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 336660 339942 . + . ID=Phyra77916;Parent=Phyra77916;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 336660 336664 . + 0 ID=Phyra77916;Parent=Phyra77916;rank=1 scaffold_27 . exon 336660 336664 . + . ID=Phyra77916.1;Parent=Phyra77916;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 336852 337444 . + 0 ID=Phyra77916;Parent=Phyra77916;rank=2 scaffold_27 . exon 336852 337444 . + . ID=Phyra77916.2;Parent=Phyra77916;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 337504 337728 . + 0 ID=Phyra77916;Parent=Phyra77916;rank=3 scaffold_27 . exon 337504 337728 . + . ID=Phyra77916.3;Parent=Phyra77916;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_27 . CDS 337760 337808 . + 0 ID=Phyra77916;Parent=Phyra77916;rank=4 scaffold_27 . exon 337760 337808 . + . ID=Phyra77916.4;Parent=Phyra77916;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_27 . CDS 337829 339119 . + 0 ID=Phyra77916;Parent=Phyra77916;rank=5 scaffold_27 . exon 337829 339119 . + . ID=Phyra77916.5;Parent=Phyra77916;constitutive=1;ensembl_phase=2;rank=5 scaffold_27 . CDS 339596 339833 . + 0 ID=Phyra77916;Parent=Phyra77916;rank=6 scaffold_27 . CDS 339935 339942 . + 0 ID=Phyra77916;Parent=Phyra77916;rank=7 scaffold_27 . exon 339596 339833 . + . ID=Phyra77916.6;Parent=Phyra77916;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_27 . exon 339935 339942 . + . ID=Phyra77916.7;Parent=Phyra77916;constitutive=1;ensembl_phase=1;rank=7 scaffold_27 ensembl protein_coding_gene 344064 344960 . - . ID=Phyra77917;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000096;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 344064 344960 . - . ID=Phyra77917;Parent=Phyra77917;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 344064 344960 . - 0 ID=Phyra77917;Parent=Phyra77917;rank=1 scaffold_27 . exon 344064 344960 . - . ID=Phyra77917.1;Parent=Phyra77917;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 347574 348532 . - . ID=Phyra77918;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000097;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 347574 348532 . - . ID=Phyra77918;Parent=Phyra77918;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 347574 347804 . - 0 ID=Phyra77918;Parent=Phyra77918;rank=3 scaffold_27 . exon 347574 347804 . - . ID=Phyra77918.3;Parent=Phyra77918;constitutive=1;rank=3 scaffold_27 . CDS 347951 348404 . - 0 ID=Phyra77918;Parent=Phyra77918;rank=2 scaffold_27 . exon 347951 348404 . - . ID=Phyra77918.2;Parent=Phyra77918;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 348456 348532 . - 0 ID=Phyra77918;Parent=Phyra77918;rank=1 scaffold_27 . exon 348456 348532 . - . ID=Phyra77918.1;Parent=Phyra77918;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . biological_region 350026 350031 0.999 + . logic_name=eponine scaffold_27 . biological_region 350353 350353 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 356317 356988 . - . ID=Phyra46112;biotype=protein_coding;external_name=gwEuk.27.55.1;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 356317 356988 . - . ID=Phyra46112;Parent=Phyra46112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 356317 356388 . - 0 ID=Phyra46112;Parent=Phyra46112;rank=5 scaffold_27 . exon 356317 356388 . - . ID=Phyra46112.5;Parent=Phyra46112;constitutive=1;rank=5 scaffold_27 . CDS 356470 356568 . - 0 ID=Phyra46112;Parent=Phyra46112;rank=4 scaffold_27 . exon 356470 356568 . - . ID=Phyra46112.4;Parent=Phyra46112;constitutive=1;rank=4 scaffold_27 . CDS 356637 356742 . - 0 ID=Phyra46112;Parent=Phyra46112;rank=3 scaffold_27 . exon 356637 356742 . - . ID=Phyra46112.3;Parent=Phyra46112;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 356807 356876 . - 0 ID=Phyra46112;Parent=Phyra46112;rank=2 scaffold_27 . exon 356807 356876 . - . ID=Phyra46112.2;Parent=Phyra46112;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_27 . CDS 356940 356988 . - 0 ID=Phyra46112;Parent=Phyra46112;rank=1 scaffold_27 . exon 356940 356988 . - . ID=Phyra46112.1;Parent=Phyra46112;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 350238 351029 . + . ID=Phyra77919;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000098;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 350238 351029 . + . ID=Phyra77919;Parent=Phyra77919;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 350238 351029 . + 0 ID=Phyra77919;Parent=Phyra77919;rank=1 scaffold_27 . exon 350238 351029 . + . ID=Phyra77919.1;Parent=Phyra77919;constitutive=1;rank=1 scaffold_27 . repeat_region 360340 360372 . ? . description=trf scaffold_27 . repeat_region 365446 365495 . ? . description=dust scaffold_27 . repeat_region 366612 368413 . ? . description=dust scaffold_27 ensembl protein_coding_gene 360684 362754 . - . ID=Phyra77921;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000100;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 360684 362754 . - . ID=Phyra77921;Parent=Phyra77921;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 360684 360689 . - 0 ID=Phyra77921;Parent=Phyra77921;rank=3 scaffold_27 . exon 360684 360689 . - . ID=Phyra77921.3;Parent=Phyra77921;constitutive=1;rank=3 scaffold_27 . CDS 360729 361285 . - 0 ID=Phyra77921;Parent=Phyra77921;rank=2 scaffold_27 . exon 360729 361285 . - . ID=Phyra77921.2;Parent=Phyra77921;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 361383 362754 . - 0 ID=Phyra77921;Parent=Phyra77921;rank=1 scaffold_27 . exon 361383 362754 . - . ID=Phyra77921.1;Parent=Phyra77921;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 365187 366534 . + . ID=Phyra77922;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000101;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 365187 366534 . + . ID=Phyra77922;Parent=Phyra77922;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 365187 365255 . + 0 ID=Phyra77922;Parent=Phyra77922;rank=1 scaffold_27 . exon 365187 365255 . + . ID=Phyra77922.1;Parent=Phyra77922;constitutive=1;rank=1 scaffold_27 . CDS 365533 365883 . + 0 ID=Phyra77922;Parent=Phyra77922;rank=2 scaffold_27 . exon 365533 365883 . + . ID=Phyra77922.2;Parent=Phyra77922;constitutive=1;rank=2 scaffold_27 . CDS 366005 366395 . + 0 ID=Phyra77922;Parent=Phyra77922;rank=3 scaffold_27 . exon 366005 366395 . + . ID=Phyra77922.3;Parent=Phyra77922;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_27 . CDS 366476 366534 . + 0 ID=Phyra77922;Parent=Phyra77922;rank=4 scaffold_27 . exon 366476 366534 . + . ID=Phyra77922.4;Parent=Phyra77922;constitutive=1;ensembl_phase=1;rank=4 scaffold_27 . biological_region 370440 370443 0.999 - . logic_name=eponine scaffold_27 . biological_region 372490 372496 0.999 - . logic_name=eponine scaffold_27 . biological_region 375631 375637 0.999 + . logic_name=eponine scaffold_27 ensembl protein_coding_gene 370127 372100 . - . ID=Phyra71567;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_27000013;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 370127 372100 . - . ID=Phyra71567;Parent=Phyra71567;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 370127 372100 . - 0 ID=Phyra71567;Parent=Phyra71567;rank=1 scaffold_27 . exon 370127 372100 . - . ID=Phyra71567.1;Parent=Phyra71567;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 373566 375029 . + . ID=Phyra77924;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000103;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 373566 375029 . + . ID=Phyra77924;Parent=Phyra77924;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 373566 375029 . + 0 ID=Phyra77924;Parent=Phyra77924;rank=1 scaffold_27 . exon 373566 375029 . + . ID=Phyra77924.1;Parent=Phyra77924;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 376026 377068 . + . ID=Phyra77925;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000104;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 376026 377068 . + . ID=Phyra77925;Parent=Phyra77925;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 376026 376983 . + 0 ID=Phyra77925;Parent=Phyra77925;rank=1 scaffold_27 . exon 376026 376983 . + . ID=Phyra77925.1;Parent=Phyra77925;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 377034 377068 . + 0 ID=Phyra77925;Parent=Phyra77925;rank=2 scaffold_27 . exon 377034 377068 . + . ID=Phyra77925.2;Parent=Phyra77925;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 ensembl protein_coding_gene 380314 382630 . - . ID=Phyra46120;biotype=protein_coding;external_name=gwEuk.27.63.1;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 380314 382630 . - . ID=Phyra46120;Parent=Phyra46120;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 380314 381399 . - 0 ID=Phyra46120;Parent=Phyra46120;rank=2 scaffold_27 . exon 380314 381399 . - . ID=Phyra46120.2;Parent=Phyra46120;constitutive=1;rank=2 scaffold_27 . CDS 381452 382630 . - 0 ID=Phyra46120;Parent=Phyra46120;rank=1 scaffold_27 . exon 381452 382630 . - . ID=Phyra46120.1;Parent=Phyra46120;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 386496 388175 . + . ID=Phyra77927;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000106;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 386496 388175 . + . ID=Phyra77927;Parent=Phyra77927;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 386496 388175 . + 0 ID=Phyra77927;Parent=Phyra77927;rank=1 scaffold_27 . exon 386496 388175 . + . ID=Phyra77927.1;Parent=Phyra77927;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 388334 390423 . - . ID=Phyra77928;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000107;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 388334 390423 . - . ID=Phyra77928;Parent=Phyra77928;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 388334 388459 . - 0 ID=Phyra77928;Parent=Phyra77928;rank=9 scaffold_27 . exon 388334 388459 . - . ID=Phyra77928.9;Parent=Phyra77928;constitutive=1;rank=9 scaffold_27 . CDS 388660 388738 . - 0 ID=Phyra77928;Parent=Phyra77928;rank=8 scaffold_27 . exon 388660 388738 . - . ID=Phyra77928.8;Parent=Phyra77928;constitutive=1;ensembl_phase=2;rank=8 scaffold_27 . CDS 389047 389158 . - 0 ID=Phyra77928;Parent=Phyra77928;rank=7 scaffold_27 . exon 389047 389158 . - . ID=Phyra77928.7;Parent=Phyra77928;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_27 . CDS 389233 389360 . - 0 ID=Phyra77928;Parent=Phyra77928;rank=6 scaffold_27 . CDS 389439 389489 . - 0 ID=Phyra77928;Parent=Phyra77928;rank=5 scaffold_27 . CDS 389558 389670 . - 0 ID=Phyra77928;Parent=Phyra77928;rank=4 scaffold_27 . CDS 389741 390108 . - 0 ID=Phyra77928;Parent=Phyra77928;rank=3 scaffold_27 . CDS 390176 390227 . - 0 ID=Phyra77928;Parent=Phyra77928;rank=2 scaffold_27 . CDS 390289 390423 . - 0 ID=Phyra77928;Parent=Phyra77928;rank=1 scaffold_27 . repeat_region 390959 391006 . ? . description=trf scaffold_27 . biological_region 391057 391061 0.999 + . logic_name=eponine scaffold_27 . biological_region 391913 391919 0.999 - . logic_name=eponine scaffold_27 . biological_region 392014 392015 0.999 - . logic_name=eponine scaffold_27 . biological_region 392720 392726 0.999 - . logic_name=eponine scaffold_27 . biological_region 396007 396008 0.999 + . logic_name=eponine scaffold_27 . exon 389233 389360 . - . ID=Phyra77928.6;Parent=Phyra77928;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_27 . exon 389439 389489 . - . ID=Phyra77928.5;Parent=Phyra77928;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_27 . exon 389558 389670 . - . ID=Phyra77928.4;Parent=Phyra77928;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_27 . exon 389741 390108 . - . ID=Phyra77928.3;Parent=Phyra77928;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 . exon 390176 390227 . - . ID=Phyra77928.2;Parent=Phyra77928;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_27 . exon 390289 390423 . - . ID=Phyra77928.1;Parent=Phyra77928;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 391088 393355 . + . ID=Phyra77929;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000108;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 391088 393355 . + . ID=Phyra77929;Parent=Phyra77929;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 391088 393355 . + 0 ID=Phyra77929;Parent=Phyra77929;rank=1 scaffold_27 . exon 391088 393355 . + . ID=Phyra77929.1;Parent=Phyra77929;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 395332 401008 . - . ID=Phyra77930;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000109;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 395332 401008 . - . ID=Phyra77930;Parent=Phyra77930;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 395332 395383 . - 0 ID=Phyra77930;Parent=Phyra77930;rank=10 scaffold_27 . exon 395332 395383 . - . ID=Phyra77930.10;Parent=Phyra77930;constitutive=1;ensembl_phase=2;rank=10 scaffold_27 . CDS 395475 395624 . - 0 ID=Phyra77930;Parent=Phyra77930;rank=9 scaffold_27 . exon 395475 395624 . - . ID=Phyra77930.9;Parent=Phyra77930;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_27 . CDS 395691 395735 . - 0 ID=Phyra77930;Parent=Phyra77930;rank=8 scaffold_27 . exon 395691 395735 . - . ID=Phyra77930.8;Parent=Phyra77930;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_27 . CDS 395945 396151 . - 0 ID=Phyra77930;Parent=Phyra77930;rank=7 scaffold_27 . exon 395945 396151 . - . ID=Phyra77930.7;Parent=Phyra77930;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_27 . CDS 396413 396677 . - 0 ID=Phyra77930;Parent=Phyra77930;rank=6 scaffold_27 . exon 396413 396677 . - . ID=Phyra77930.6;Parent=Phyra77930;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_27 . CDS 396963 398063 . - 0 ID=Phyra77930;Parent=Phyra77930;rank=5 scaffold_27 . exon 396963 398063 . - . ID=Phyra77930.5;Parent=Phyra77930;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_27 . CDS 398232 398418 . - 0 ID=Phyra77930;Parent=Phyra77930;rank=4 scaffold_27 . exon 398232 398418 . - . ID=Phyra77930.4;Parent=Phyra77930;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_27 . CDS 398504 400396 . - 0 ID=Phyra77930;Parent=Phyra77930;rank=3 scaffold_27 . exon 398504 400396 . - . ID=Phyra77930.3;Parent=Phyra77930;constitutive=1;rank=3 scaffold_27 . CDS 400474 400647 . - 0 ID=Phyra77930;Parent=Phyra77930;rank=2 scaffold_27 . CDS 400736 401008 . - 0 ID=Phyra77930;Parent=Phyra77930;rank=1 scaffold_27 . repeat_region 405844 405854 . ? . description=dust scaffold_27 ensembl protein_coding_gene 401815 402243 . + . ID=Phyra46132;biotype=protein_coding;external_name=gwEuk.27.75.1;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 401815 402243 . + . ID=Phyra46132;Parent=Phyra46132;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 401815 402142 . + 0 ID=Phyra46132;Parent=Phyra46132;rank=1 scaffold_27 . exon 401815 402142 . + . ID=Phyra46132.1;Parent=Phyra46132;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 402182 402243 . + 0 ID=Phyra46132;Parent=Phyra46132;rank=2 scaffold_27 . exon 402182 402243 . + . ID=Phyra46132.2;Parent=Phyra46132;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 ensembl protein_coding_gene 403716 404570 . - . ID=Phyra46133;biotype=protein_coding;external_name=gwEuk.27.76.1;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 403716 404570 . - . ID=Phyra46133;Parent=Phyra46133;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 403716 403839 . - 0 ID=Phyra46133;Parent=Phyra46133;rank=4 scaffold_27 . exon 403716 403839 . - . ID=Phyra46133.4;Parent=Phyra46133;constitutive=1;ensembl_phase=2;rank=4 scaffold_27 . CDS 403902 404063 . - 0 ID=Phyra46133;Parent=Phyra46133;rank=3 scaffold_27 . exon 403902 404063 . - . ID=Phyra46133.3;Parent=Phyra46133;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_27 . CDS 404124 404341 . - 0 ID=Phyra46133;Parent=Phyra46133;rank=2 scaffold_27 . exon 404124 404341 . - . ID=Phyra46133.2;Parent=Phyra46133;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_27 . CDS 404430 404570 . - 0 ID=Phyra46133;Parent=Phyra46133;rank=1 scaffold_27 . exon 404430 404570 . - . ID=Phyra46133.1;Parent=Phyra46133;constitutive=1;rank=1 scaffold_27 . exon 400474 400647 . - . ID=Phyra77930.2;Parent=Phyra77930;constitutive=1;rank=2 scaffold_27 . exon 400736 401008 . - . ID=Phyra77930.1;Parent=Phyra77930;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 406947 408896 . - . ID=Phyra77932;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000111;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 406947 408896 . - . ID=Phyra77932;Parent=Phyra77932;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 406947 408896 . - 0 ID=Phyra77932;Parent=Phyra77932;rank=1 scaffold_27 . exon 406947 408896 . - . ID=Phyra77932.1;Parent=Phyra77932;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 409124 409918 . + . ID=Phyra77933;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000112;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 409124 409918 . + . ID=Phyra77933;Parent=Phyra77933;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 409124 409918 . + 0 ID=Phyra77933;Parent=Phyra77933;rank=1 scaffold_27 . exon 409124 409918 . + . ID=Phyra77933.1;Parent=Phyra77933;constitutive=1;rank=1 scaffold_27 . biological_region 412588 412589 0.999 + . logic_name=eponine scaffold_27 . repeat_region 416080 416136 . ? . description=trf scaffold_27 ensembl protein_coding_gene 416027 418434 . + . ID=Phyra46139;biotype=protein_coding;external_name=gwEuk.27.82.1;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 416027 418434 . + . ID=Phyra46139;Parent=Phyra46139;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 416027 416251 . + 0 ID=Phyra46139;Parent=Phyra46139;rank=1 scaffold_27 . exon 416027 416251 . + . ID=Phyra46139.1;Parent=Phyra46139;constitutive=1;rank=1 scaffold_27 . CDS 416312 416446 . + 0 ID=Phyra46139;Parent=Phyra46139;rank=2 scaffold_27 . exon 416312 416446 . + . ID=Phyra46139.2;Parent=Phyra46139;constitutive=1;rank=2 scaffold_27 . CDS 416514 416567 . + 0 ID=Phyra46139;Parent=Phyra46139;rank=3 scaffold_27 . exon 416514 416567 . + . ID=Phyra46139.3;Parent=Phyra46139;constitutive=1;rank=3 scaffold_27 . CDS 416641 416904 . + 0 ID=Phyra46139;Parent=Phyra46139;rank=4 scaffold_27 . exon 416641 416904 . + . ID=Phyra46139.4;Parent=Phyra46139;constitutive=1;rank=4 scaffold_27 . CDS 416971 417138 . + 0 ID=Phyra46139;Parent=Phyra46139;rank=5 scaffold_27 . exon 416971 417138 . + . ID=Phyra46139.5;Parent=Phyra46139;constitutive=1;rank=5 scaffold_27 . CDS 417217 417522 . + 0 ID=Phyra46139;Parent=Phyra46139;rank=6 scaffold_27 . exon 417217 417522 . + . ID=Phyra46139.6;Parent=Phyra46139;constitutive=1;rank=6 scaffold_27 . CDS 417608 417827 . + 0 ID=Phyra46139;Parent=Phyra46139;rank=7 scaffold_27 . exon 417608 417827 . + . ID=Phyra46139.7;Parent=Phyra46139;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_27 . CDS 417920 418034 . + 0 ID=Phyra46139;Parent=Phyra46139;rank=8 scaffold_27 . exon 417920 418034 . + . ID=Phyra46139.8;Parent=Phyra46139;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_27 . CDS 418101 418241 . + 0 ID=Phyra46139;Parent=Phyra46139;rank=9 scaffold_27 . exon 418101 418241 . + . ID=Phyra46139.9;Parent=Phyra46139;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_27 . CDS 418317 418434 . + 0 ID=Phyra46139;Parent=Phyra46139;rank=10 scaffold_27 . exon 418317 418434 . + . ID=Phyra46139.10;Parent=Phyra46139;constitutive=1;ensembl_phase=2;rank=10 scaffold_27 ensembl protein_coding_gene 411304 412439 . + . ID=Phyra77934;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000113;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 411304 412439 . + . ID=Phyra77934;Parent=Phyra77934;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 411304 411637 . + 0 ID=Phyra77934;Parent=Phyra77934;rank=1 scaffold_27 . exon 411304 411637 . + . ID=Phyra77934.1;Parent=Phyra77934;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 411718 411848 . + 0 ID=Phyra77934;Parent=Phyra77934;rank=2 scaffold_27 . exon 411718 411848 . + . ID=Phyra77934.2;Parent=Phyra77934;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 411909 412096 . + 0 ID=Phyra77934;Parent=Phyra77934;rank=3 scaffold_27 . exon 411909 412096 . + . ID=Phyra77934.3;Parent=Phyra77934;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_27 . CDS 412166 412439 . + 0 ID=Phyra77934;Parent=Phyra77934;rank=4 scaffold_27 . exon 412166 412439 . + . ID=Phyra77934.4;Parent=Phyra77934;constitutive=1;ensembl_phase=2;rank=4 scaffold_27 ensembl protein_coding_gene 421075 421890 . - . ID=Phyra71568;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_27000014;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 421075 421890 . - . ID=Phyra71568;Parent=Phyra71568;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 421075 421788 . - 0 ID=Phyra71568;Parent=Phyra71568;rank=2 scaffold_27 . exon 421075 421788 . - . ID=Phyra71568.2;Parent=Phyra71568;constitutive=1;rank=2 scaffold_27 . CDS 421852 421890 . - 0 ID=Phyra71568;Parent=Phyra71568;rank=1 scaffold_27 . exon 421852 421890 . - . ID=Phyra71568.1;Parent=Phyra71568;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 427287 428522 . + . ID=Phyra71569;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_27000015;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 427287 428522 . + . ID=Phyra71569;Parent=Phyra71569;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 427287 428522 . + 0 ID=Phyra71569;Parent=Phyra71569;rank=1 scaffold_27 . exon 427287 428522 . + . ID=Phyra71569.1;Parent=Phyra71569;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 429057 431895 . + . ID=Phyra71570;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_27000016;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 429057 431895 . + . ID=Phyra71570;Parent=Phyra71570;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 429057 429113 . + 0 ID=Phyra71570;Parent=Phyra71570;rank=1 scaffold_27 . exon 429057 429113 . + . ID=Phyra71570.1;Parent=Phyra71570;constitutive=1;rank=1 scaffold_27 . CDS 429171 430777 . + 0 ID=Phyra71570;Parent=Phyra71570;rank=2 scaffold_27 . CDS 430848 431628 . + 0 ID=Phyra71570;Parent=Phyra71570;rank=3 scaffold_27 . CDS 431710 431895 . + 0 ID=Phyra71570;Parent=Phyra71570;rank=4 scaffold_27 . biological_region 429727 429727 0.999 - . logic_name=eponine scaffold_27 . biological_region 429780 429787 0.999 + . logic_name=eponine scaffold_27 . repeat_region 432074 432111 . ? . description=dust scaffold_27 . repeat_region 432075 432112 . ? . description=trf scaffold_27 . repeat_region 437661 437670 . ? . description=dust scaffold_27 . biological_region 439007 439008 0.999 - . logic_name=eponine scaffold_27 . exon 429171 430777 . + . ID=Phyra71570.2;Parent=Phyra71570;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_27 . exon 430848 431628 . + . ID=Phyra71570.3;Parent=Phyra71570;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . exon 431710 431895 . + . ID=Phyra71570.4;Parent=Phyra71570;constitutive=1;rank=4 scaffold_27 ensembl protein_coding_gene 436513 440272 . + . ID=Phyra77939;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000118;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 436513 440272 . + . ID=Phyra77939;Parent=Phyra77939;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 436513 436829 . + 0 ID=Phyra77939;Parent=Phyra77939;rank=1 scaffold_27 . exon 436513 436829 . + . ID=Phyra77939.1;Parent=Phyra77939;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 436909 437087 . + 0 ID=Phyra77939;Parent=Phyra77939;rank=2 scaffold_27 . exon 436909 437087 . + . ID=Phyra77939.2;Parent=Phyra77939;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 437153 437331 . + 0 ID=Phyra77939;Parent=Phyra77939;rank=3 scaffold_27 . exon 437153 437331 . + . ID=Phyra77939.3;Parent=Phyra77939;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 . CDS 437397 437639 . + 0 ID=Phyra77939;Parent=Phyra77939;rank=4 scaffold_27 . exon 437397 437639 . + . ID=Phyra77939.4;Parent=Phyra77939;constitutive=1;rank=4 scaffold_27 . CDS 437712 437754 . + 0 ID=Phyra77939;Parent=Phyra77939;rank=5 scaffold_27 . exon 437712 437754 . + . ID=Phyra77939.5;Parent=Phyra77939;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_27 . CDS 438716 438781 . + 0 ID=Phyra77939;Parent=Phyra77939;rank=6 scaffold_27 . exon 438716 438781 . + . ID=Phyra77939.6;Parent=Phyra77939;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_27 . CDS 438873 439063 . + 0 ID=Phyra77939;Parent=Phyra77939;rank=7 scaffold_27 . exon 438873 439063 . + . ID=Phyra77939.7;Parent=Phyra77939;constitutive=1;ensembl_phase=1;rank=7 scaffold_27 . CDS 439134 439178 . + 0 ID=Phyra77939;Parent=Phyra77939;rank=8 scaffold_27 . CDS 439244 439279 . + 0 ID=Phyra77939;Parent=Phyra77939;rank=9 scaffold_27 . CDS 439623 439696 . + 0 ID=Phyra77939;Parent=Phyra77939;rank=10 scaffold_27 . CDS 439768 440272 . + 0 ID=Phyra77939;Parent=Phyra77939;rank=11 scaffold_27 . exon 439134 439178 . + . ID=Phyra77939.8;Parent=Phyra77939;constitutive=1;rank=8 scaffold_27 . exon 439244 439279 . + . ID=Phyra77939.9;Parent=Phyra77939;constitutive=1;rank=9 scaffold_27 . exon 439623 439696 . + . ID=Phyra77939.10;Parent=Phyra77939;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_27 . exon 439768 440272 . + . ID=Phyra77939.11;Parent=Phyra77939;constitutive=1;ensembl_phase=2;rank=11 scaffold_27 . biological_region 450441 450441 0.999 - . logic_name=eponine scaffold_27 . biological_region 450640 450644 0.999 + . logic_name=eponine scaffold_27 . repeat_region 456890 456910 . ? . description=dust scaffold_27 . repeat_region 457100 457114 . ? . description=dust scaffold_27 . repeat_region 457682 457689 . ? . description=dust scaffold_27 . repeat_region 457865 457875 . ? . description=dust scaffold_27 ensembl protein_coding_gene 463491 464738 . - . ID=Phyra77940;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000119;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 463491 464738 . - . ID=Phyra77940;Parent=Phyra77940;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 463491 464738 . - 0 ID=Phyra77940;Parent=Phyra77940;rank=1 scaffold_27 . exon 463491 464738 . - . ID=Phyra77940.1;Parent=Phyra77940;constitutive=1;rank=1 scaffold_27 . repeat_region 470826 470838 . ? . description=dust scaffold_27 . repeat_region 471071 471083 . ? . description=dust scaffold_27 . repeat_region 472412 472420 . ? . description=dust scaffold_27 . repeat_region 472551 472558 . ? . description=dust scaffold_27 . repeat_region 475982 475989 . ? . description=dust scaffold_27 . repeat_region 477099 477152 . ? . description=trf scaffold_27 . biological_region 477411 477414 0.999 - . logic_name=eponine scaffold_27 . repeat_region 477908 477923 . ? . description=dust scaffold_27 . repeat_region 478867 478886 . ? . description=trf scaffold_27 ensembl protein_coding_gene 469388 470640 . - . ID=Phyra77941;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000120;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 469388 470640 . - . ID=Phyra77941;Parent=Phyra77941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 469388 469630 . - 0 ID=Phyra77941;Parent=Phyra77941;rank=4 scaffold_27 . exon 469388 469630 . - . ID=Phyra77941.4;Parent=Phyra77941;constitutive=1;rank=4 scaffold_27 . CDS 469857 469994 . - 0 ID=Phyra77941;Parent=Phyra77941;rank=3 scaffold_27 . exon 469857 469994 . - . ID=Phyra77941.3;Parent=Phyra77941;constitutive=1;rank=3 scaffold_27 . CDS 470018 470350 . - 0 ID=Phyra77941;Parent=Phyra77941;rank=2 scaffold_27 . exon 470018 470350 . - . ID=Phyra77941.2;Parent=Phyra77941;constitutive=1;rank=2 scaffold_27 . CDS 470416 470640 . - 0 ID=Phyra77941;Parent=Phyra77941;rank=1 scaffold_27 . exon 470416 470640 . - . ID=Phyra77941.1;Parent=Phyra77941;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 480998 481510 . + . ID=Phyra77942;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000121;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 480998 481510 . + . ID=Phyra77942;Parent=Phyra77942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 480998 481510 . + 0 ID=Phyra77942;Parent=Phyra77942;rank=1 scaffold_27 . exon 480998 481510 . + . ID=Phyra77942.1;Parent=Phyra77942;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 482551 482983 . + . ID=Phyra77943;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000122;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 482551 482983 . + . ID=Phyra77943;Parent=Phyra77943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 482551 482572 . + 0 ID=Phyra77943;Parent=Phyra77943;rank=1 scaffold_27 . exon 482551 482572 . + . ID=Phyra77943.1;Parent=Phyra77943;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 482649 482983 . + 0 ID=Phyra77943;Parent=Phyra77943;rank=2 scaffold_27 . exon 482649 482983 . + . ID=Phyra77943.2;Parent=Phyra77943;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . repeat_region 489104 489119 . ? . description=dust scaffold_27 . repeat_region 490630 490640 . ? . description=dust scaffold_27 . repeat_region 495517 495524 . ? . description=dust scaffold_27 ensembl protein_coding_gene 490822 491727 . - . ID=Phyra77944;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000123;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 490822 491727 . - . ID=Phyra77944;Parent=Phyra77944;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 490822 491727 . - 0 ID=Phyra77944;Parent=Phyra77944;rank=1 scaffold_27 . exon 490822 491727 . - . ID=Phyra77944.1;Parent=Phyra77944;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 494444 495238 . + . ID=Phyra77945;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000124;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 494444 495238 . + . ID=Phyra77945;Parent=Phyra77945;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 494444 495238 . + 0 ID=Phyra77945;Parent=Phyra77945;rank=1 scaffold_27 . exon 494444 495238 . + . ID=Phyra77945.1;Parent=Phyra77945;constitutive=1;rank=1 scaffold_27 . repeat_region 499663 499725 . ? . description=trf scaffold_27 ensembl protein_coding_gene 503587 504399 . + . ID=Phyra71571;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_27000017;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 503587 504399 . + . ID=Phyra71571;Parent=Phyra71571;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 503587 504399 . + 0 ID=Phyra71571;Parent=Phyra71571;rank=1 scaffold_27 . exon 503587 504399 . + . ID=Phyra71571.1;Parent=Phyra71571;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 501356 503483 . + . ID=Phyra77946;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000125;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 501356 503483 . + . ID=Phyra77946;Parent=Phyra77946;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 501356 502237 . + 0 ID=Phyra77946;Parent=Phyra77946;rank=1 scaffold_27 . exon 501356 502237 . + . ID=Phyra77946.1;Parent=Phyra77946;constitutive=1;rank=1 scaffold_27 . CDS 502361 502504 . + 0 ID=Phyra77946;Parent=Phyra77946;rank=2 scaffold_27 . exon 502361 502504 . + . ID=Phyra77946.2;Parent=Phyra77946;constitutive=1;rank=2 scaffold_27 . CDS 502933 503483 . + 0 ID=Phyra77946;Parent=Phyra77946;rank=3 scaffold_27 . exon 502933 503483 . + . ID=Phyra77946.3;Parent=Phyra77946;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_27 . repeat_region 505804 519379 . ? . description=dust scaffold_27 . biological_region 523986 523989 0.999 + . logic_name=eponine scaffold_27 . biological_region 524213 524214 0.999 + . logic_name=eponine scaffold_27 . biological_region 524632 524636 0.999 + . logic_name=eponine scaffold_27 . repeat_region 527226 527262 . ? . description=trf scaffold_27 . repeat_region 527283 527326 . ? . description=trf scaffold_27 . biological_region 528035 528039 0.999 + . logic_name=eponine scaffold_27 . biological_region 528077 528077 0.999 + . logic_name=eponine scaffold_27 . biological_region 528122 528127 0.999 + . logic_name=eponine scaffold_27 . repeat_region 528173 528212 . ? . description=trf scaffold_27 . biological_region 528194 528196 0.999 + . logic_name=eponine scaffold_27 . biological_region 528237 528243 0.999 - . logic_name=eponine scaffold_27 . biological_region 528316 528320 0.999 + . logic_name=eponine scaffold_27 . repeat_region 528337 528363 . ? . description=trf scaffold_27 . biological_region 528383 528383 0.999 - . logic_name=eponine scaffold_27 . repeat_region 528452 528521 . ? . description=trf scaffold_27 . biological_region 528560 528564 0.999 + . logic_name=eponine scaffold_27 ensembl protein_coding_gene 520966 521766 . + . ID=Phyra77948;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000127;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 520966 521766 . + . ID=Phyra77948;Parent=Phyra77948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 520966 521766 . + 0 ID=Phyra77948;Parent=Phyra77948;rank=1 scaffold_27 . exon 520966 521766 . + . ID=Phyra77948.1;Parent=Phyra77948;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 523421 523861 . + . ID=Phyra77949;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000128;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 523421 523861 . + . ID=Phyra77949;Parent=Phyra77949;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 523421 523861 . + 0 ID=Phyra77949;Parent=Phyra77949;rank=1 scaffold_27 . exon 523421 523861 . + . ID=Phyra77949.1;Parent=Phyra77949;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 523924 528876 . - . ID=Phyra77950;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000129;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 523924 528876 . - . ID=Phyra77950;Parent=Phyra77950;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 523924 524989 . - 0 ID=Phyra77950;Parent=Phyra77950;rank=5 scaffold_27 . exon 523924 524989 . - . ID=Phyra77950.5;Parent=Phyra77950;constitutive=1;ensembl_phase=2;rank=5 scaffold_27 . CDS 525153 525334 . - 0 ID=Phyra77950;Parent=Phyra77950;rank=4 scaffold_27 . exon 525153 525334 . - . ID=Phyra77950.4;Parent=Phyra77950;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_27 . CDS 525412 525702 . - 0 ID=Phyra77950;Parent=Phyra77950;rank=3 scaffold_27 . exon 525412 525702 . - . ID=Phyra77950.3;Parent=Phyra77950;constitutive=1;rank=3 scaffold_27 . CDS 525939 526044 . - 0 ID=Phyra77950;Parent=Phyra77950;rank=2 scaffold_27 . exon 525939 526044 . - . ID=Phyra77950.2;Parent=Phyra77950;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 526076 528876 . - 0 ID=Phyra77950;Parent=Phyra77950;rank=1 scaffold_27 . exon 526076 528876 . - . ID=Phyra77950.1;Parent=Phyra77950;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . repeat_region 529762 529772 . ? . description=dust scaffold_27 . repeat_region 532155 532163 . ? . description=dust scaffold_27 ensembl protein_coding_gene 533378 537751 . - . ID=Phyra46151;biotype=protein_coding;external_name=gwEuk.27.94.1;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 533378 537751 . - . ID=Phyra46151;Parent=Phyra46151;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 533378 537751 . - 0 ID=Phyra46151;Parent=Phyra46151;rank=1 scaffold_27 . exon 533378 537751 . - . ID=Phyra46151.1;Parent=Phyra46151;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 532278 533143 . + . ID=Phyra77951;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_27000130;logic_name=jgi_phyra1 scaffold_27 ensembl transcript 532278 533143 . + . ID=Phyra77951;Parent=Phyra77951;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_27 . CDS 532278 533143 . + 0 ID=Phyra77951;Parent=Phyra77951;rank=1 scaffold_27 . exon 532278 533143 . + . ID=Phyra77951.1;Parent=Phyra77951;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_25 1 556472 scaffold_25 . biological_region 357 361 0.999 + . logic_name=eponine scaffold_25 . repeat_region 1897 13867 . ? . description=dust scaffold_25 ensembl protein_coding_gene 831 1785 . - . ID=Phyra77480;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000001;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 831 1785 . - . ID=Phyra77480;Parent=Phyra77480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 831 1074 . - 0 ID=Phyra77480;Parent=Phyra77480;rank=4 scaffold_25 . exon 831 1074 . - . ID=Phyra77480.4;Parent=Phyra77480;constitutive=1;ensembl_phase=2;rank=4 scaffold_25 . CDS 1214 1257 . - 0 ID=Phyra77480;Parent=Phyra77480;rank=3 scaffold_25 . exon 1214 1257 . - . ID=Phyra77480.3;Parent=Phyra77480;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_25 . CDS 1481 1594 . - 0 ID=Phyra77480;Parent=Phyra77480;rank=2 scaffold_25 . exon 1481 1594 . - . ID=Phyra77480.2;Parent=Phyra77480;constitutive=1;rank=2 scaffold_25 . CDS 1630 1785 . - 0 ID=Phyra77480;Parent=Phyra77480;rank=1 scaffold_25 . exon 1630 1785 . - . ID=Phyra77480.1;Parent=Phyra77480;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 19843 20766 . + . ID=Phyra77481;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000002;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 19843 20766 . + . ID=Phyra77481;Parent=Phyra77481;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 19843 20111 . + 0 ID=Phyra77481;Parent=Phyra77481;rank=1 scaffold_25 . exon 19843 20111 . + . ID=Phyra77481.1;Parent=Phyra77481;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 20184 20213 . + 0 ID=Phyra77481;Parent=Phyra77481;rank=2 scaffold_25 . CDS 20279 20349 . + 0 ID=Phyra77481;Parent=Phyra77481;rank=3 scaffold_25 . CDS 20429 20508 . + 0 ID=Phyra77481;Parent=Phyra77481;rank=4 scaffold_25 . CDS 20587 20611 . + 0 ID=Phyra77481;Parent=Phyra77481;rank=5 scaffold_25 . CDS 20690 20766 . + 0 ID=Phyra77481;Parent=Phyra77481;rank=6 scaffold_25 . biological_region 24190 24194 0.999 - . logic_name=eponine scaffold_25 . exon 20184 20213 . + . ID=Phyra77481.2;Parent=Phyra77481;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_25 . exon 20279 20349 . + . ID=Phyra77481.3;Parent=Phyra77481;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_25 . exon 20429 20508 . + . ID=Phyra77481.4;Parent=Phyra77481;constitutive=1;ensembl_phase=1;rank=4 scaffold_25 . exon 20587 20611 . + . ID=Phyra77481.5;Parent=Phyra77481;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_25 . exon 20690 20766 . + . ID=Phyra77481.6;Parent=Phyra77481;constitutive=1;ensembl_phase=1;rank=6 scaffold_25 ensembl protein_coding_gene 24066 24765 . + . ID=Phyra77482;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000003;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 24066 24765 . + . ID=Phyra77482;Parent=Phyra77482;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 24066 24692 . + 0 ID=Phyra77482;Parent=Phyra77482;rank=1 scaffold_25 . exon 24066 24692 . + . ID=Phyra77482.1;Parent=Phyra77482;constitutive=1;rank=1 scaffold_25 . CDS 24763 24765 . + 0 ID=Phyra77482;Parent=Phyra77482;rank=2 scaffold_25 . exon 24763 24765 . + . ID=Phyra77482.2;Parent=Phyra77482;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 29008 30552 . - . ID=Phyra77483;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000004;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 29008 30552 . - . ID=Phyra77483;Parent=Phyra77483;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 29008 29048 . - 0 ID=Phyra77483;Parent=Phyra77483;rank=9 scaffold_25 . exon 29008 29048 . - . ID=Phyra77483.9;Parent=Phyra77483;constitutive=1;ensembl_phase=1;rank=9 scaffold_25 . CDS 29123 29168 . - 0 ID=Phyra77483;Parent=Phyra77483;rank=8 scaffold_25 . exon 29123 29168 . - . ID=Phyra77483.8;Parent=Phyra77483;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_25 . CDS 29242 29285 . - 0 ID=Phyra77483;Parent=Phyra77483;rank=7 scaffold_25 . exon 29242 29285 . - . ID=Phyra77483.7;Parent=Phyra77483;constitutive=1;ensembl_phase=1;rank=7 scaffold_25 . CDS 29358 29503 . - 0 ID=Phyra77483;Parent=Phyra77483;rank=6 scaffold_25 . exon 29358 29503 . - . ID=Phyra77483.6;Parent=Phyra77483;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_25 . CDS 29579 29634 . - 0 ID=Phyra77483;Parent=Phyra77483;rank=5 scaffold_25 . exon 29579 29634 . - . ID=Phyra77483.5;Parent=Phyra77483;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_25 . CDS 29718 30088 . - 0 ID=Phyra77483;Parent=Phyra77483;rank=4 scaffold_25 . exon 29718 30088 . - . ID=Phyra77483.4;Parent=Phyra77483;constitutive=1;ensembl_phase=1;rank=4 scaffold_25 . CDS 30151 30235 . - 0 ID=Phyra77483;Parent=Phyra77483;rank=3 scaffold_25 . CDS 30303 30427 . - 0 ID=Phyra77483;Parent=Phyra77483;rank=2 scaffold_25 . CDS 30486 30552 . - 0 ID=Phyra77483;Parent=Phyra77483;rank=1 scaffold_25 . exon 30151 30235 . - . ID=Phyra77483.3;Parent=Phyra77483;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_25 . exon 30303 30427 . - . ID=Phyra77483.2;Parent=Phyra77483;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . exon 30486 30552 . - . ID=Phyra77483.1;Parent=Phyra77483;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 32607 34397 . + . ID=Phyra77484;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000005;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 32607 34397 . + . ID=Phyra77484;Parent=Phyra77484;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 32607 34397 . + 0 ID=Phyra77484;Parent=Phyra77484;rank=1 scaffold_25 . exon 32607 34397 . + . ID=Phyra77484.1;Parent=Phyra77484;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 34602 35321 . - . ID=Phyra77485;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000006;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 34602 35321 . - . ID=Phyra77485;Parent=Phyra77485;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 34602 35321 . - 0 ID=Phyra77485;Parent=Phyra77485;rank=1 scaffold_25 . exon 34602 35321 . - . ID=Phyra77485.1;Parent=Phyra77485;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 37860 38768 . + . ID=Phyra77486;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000007;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 37860 38768 . + . ID=Phyra77486;Parent=Phyra77486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 37860 38768 . + 0 ID=Phyra77486;Parent=Phyra77486;rank=1 scaffold_25 . exon 37860 38768 . + . ID=Phyra77486.1;Parent=Phyra77486;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 39120 41578 . + . ID=Phyra77487;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000008;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 39120 41578 . + . ID=Phyra77487;Parent=Phyra77487;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 39120 39149 . + 0 ID=Phyra77487;Parent=Phyra77487;rank=1 scaffold_25 . exon 39120 39149 . + . ID=Phyra77487.1;Parent=Phyra77487;constitutive=1;rank=1 scaffold_25 . CDS 39257 41578 . + 0 ID=Phyra77487;Parent=Phyra77487;rank=2 scaffold_25 . exon 39257 41578 . + . ID=Phyra77487.2;Parent=Phyra77487;constitutive=1;rank=2 scaffold_25 . repeat_region 41997 42097 . ? . description=trf scaffold_25 . repeat_region 41997 42100 . ? . description=trf scaffold_25 . repeat_region 42023 42086 . ? . description=dust scaffold_25 . biological_region 42131 42132 0.999 + . logic_name=eponine scaffold_25 . repeat_region 42839 42873 . ? . description=trf scaffold_25 . repeat_region 42917 43125 . ? . description=trf scaffold_25 . repeat_region 43099 43152 . ? . description=trf scaffold_25 . biological_region 43670 43683 0.999 + . logic_name=eponine scaffold_25 . repeat_region 43677 43713 . ? . description=trf scaffold_25 . repeat_region 43796 43817 . ? . description=trf scaffold_25 . biological_region 43850 43853 0.999 - . logic_name=eponine scaffold_25 . biological_region 43883 43885 0.999 - . logic_name=eponine scaffold_25 . biological_region 43934 43934 0.999 - . logic_name=eponine scaffold_25 . biological_region 44030 44030 0.999 - . logic_name=eponine scaffold_25 . biological_region 44247 44252 0.999 - . logic_name=eponine scaffold_25 . biological_region 45174 45177 0.999 + . logic_name=eponine scaffold_25 . biological_region 45179 45180 0.999 - . logic_name=eponine scaffold_25 . biological_region 45540 45544 0.999 + . logic_name=eponine scaffold_25 . biological_region 45558 45567 0.999 + . logic_name=eponine scaffold_25 . repeat_region 46344 46351 . ? . description=dust scaffold_25 . biological_region 46720 46720 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 41918 43339 . - . ID=Phyra77488;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000009;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 41918 43339 . - . ID=Phyra77488;Parent=Phyra77488;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 41918 43339 . - 0 ID=Phyra77488;Parent=Phyra77488;rank=1 scaffold_25 . exon 41918 43339 . - . ID=Phyra77488.1;Parent=Phyra77488;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 43655 44792 . + . ID=Phyra77489;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000010;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 43655 44792 . + . ID=Phyra77489;Parent=Phyra77489;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 43655 44428 . + 0 ID=Phyra77489;Parent=Phyra77489;rank=1 scaffold_25 . exon 43655 44428 . + . ID=Phyra77489.1;Parent=Phyra77489;constitutive=1;rank=1 scaffold_25 . CDS 44508 44792 . + 0 ID=Phyra77489;Parent=Phyra77489;rank=2 scaffold_25 . exon 44508 44792 . + . ID=Phyra77489.2;Parent=Phyra77489;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 45095 46189 . + . ID=Phyra77490;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000011;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 45095 46189 . + . ID=Phyra77490;Parent=Phyra77490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 45095 45832 . + 0 ID=Phyra77490;Parent=Phyra77490;rank=1 scaffold_25 . exon 45095 45832 . + . ID=Phyra77490.1;Parent=Phyra77490;constitutive=1;rank=1 scaffold_25 . CDS 45907 46128 . + 0 ID=Phyra77490;Parent=Phyra77490;rank=2 scaffold_25 . exon 45907 46128 . + . ID=Phyra77490.2;Parent=Phyra77490;constitutive=1;rank=2 scaffold_25 . CDS 46178 46189 . + 0 ID=Phyra77490;Parent=Phyra77490;rank=3 scaffold_25 . exon 46178 46189 . + . ID=Phyra77490.3;Parent=Phyra77490;constitutive=1;rank=3 scaffold_25 ensembl protein_coding_gene 46718 48292 . - . ID=Phyra77491;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000012;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 46718 48292 . - . ID=Phyra77491;Parent=Phyra77491;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 46718 47551 . - 0 ID=Phyra77491;Parent=Phyra77491;rank=3 scaffold_25 . exon 46718 47551 . - . ID=Phyra77491.3;Parent=Phyra77491;constitutive=1;rank=3 scaffold_25 . CDS 47682 47798 . - 0 ID=Phyra77491;Parent=Phyra77491;rank=2 scaffold_25 . exon 47682 47798 . - . ID=Phyra77491.2;Parent=Phyra77491;constitutive=1;rank=2 scaffold_25 . CDS 47897 48292 . - 0 ID=Phyra77491;Parent=Phyra77491;rank=1 scaffold_25 . exon 47897 48292 . - . ID=Phyra77491.1;Parent=Phyra77491;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 53245 54173 . - . ID=Phyra77494;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000015;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 53245 54173 . - . ID=Phyra77494;Parent=Phyra77494;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 53245 54113 . - 0 ID=Phyra77494;Parent=Phyra77494;rank=2 scaffold_25 . exon 53245 54113 . - . ID=Phyra77494.2;Parent=Phyra77494;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 54170 54173 . - 0 ID=Phyra77494;Parent=Phyra77494;rank=1 scaffold_25 . exon 54170 54173 . - . ID=Phyra77494.1;Parent=Phyra77494;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 55164 57269 . - . ID=Phyra77495;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000016;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 55164 57269 . - . ID=Phyra77495;Parent=Phyra77495;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 55164 56316 . - 0 ID=Phyra77495;Parent=Phyra77495;rank=3 scaffold_25 . exon 55164 56316 . - . ID=Phyra77495.3;Parent=Phyra77495;constitutive=1;ensembl_phase=2;rank=3 scaffold_25 . CDS 56385 56939 . - 0 ID=Phyra77495;Parent=Phyra77495;rank=2 scaffold_25 . exon 56385 56939 . - . ID=Phyra77495.2;Parent=Phyra77495;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_25 . CDS 57067 57269 . - 0 ID=Phyra77495;Parent=Phyra77495;rank=1 scaffold_25 . exon 57067 57269 . - . ID=Phyra77495.1;Parent=Phyra77495;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 57617 60052 . - . ID=Phyra77496;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000017;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 57617 60052 . - . ID=Phyra77496;Parent=Phyra77496;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 57617 60052 . - 0 ID=Phyra77496;Parent=Phyra77496;rank=1 scaffold_25 . exon 57617 60052 . - . ID=Phyra77496.1;Parent=Phyra77496;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 49841 53074 . - . ID=Phyra94817;biotype=protein_coding;external_name=C_scaffold_25000002;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 49841 53074 . - . ID=Phyra94817;Parent=Phyra94817;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 49841 50214 . - 0 ID=Phyra94817;Parent=Phyra94817;rank=10 scaffold_25 . exon 49841 50214 . - . ID=Phyra94817.10;Parent=Phyra94817;constitutive=1;ensembl_phase=1;rank=10 scaffold_25 . CDS 50286 50380 . - 0 ID=Phyra94817;Parent=Phyra94817;rank=9 scaffold_25 . exon 50286 50380 . - . ID=Phyra94817.9;Parent=Phyra94817;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_25 . CDS 50464 50641 . - 0 ID=Phyra94817;Parent=Phyra94817;rank=8 scaffold_25 . exon 50464 50641 . - . ID=Phyra94817.8;Parent=Phyra94817;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_25 . CDS 50899 51061 . - 0 ID=Phyra94817;Parent=Phyra94817;rank=7 scaffold_25 . exon 50899 51061 . - . ID=Phyra94817.7;Parent=Phyra94817;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_25 . CDS 51137 51285 . - 0 ID=Phyra94817;Parent=Phyra94817;rank=6 scaffold_25 . exon 51137 51285 . - . ID=Phyra94817.6;Parent=Phyra94817;constitutive=1;ensembl_phase=1;rank=6 scaffold_25 . CDS 51539 51622 . - 0 ID=Phyra94817;Parent=Phyra94817;rank=5 scaffold_25 . exon 51539 51622 . - . ID=Phyra94817.5;Parent=Phyra94817;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_25 . CDS 51693 51770 . - 0 ID=Phyra94817;Parent=Phyra94817;rank=4 scaffold_25 . exon 51693 51770 . - . ID=Phyra94817.4;Parent=Phyra94817;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_25 . CDS 51876 52431 . - 0 ID=Phyra94817;Parent=Phyra94817;rank=3 scaffold_25 . exon 51876 52431 . - . ID=Phyra94817.3;Parent=Phyra94817;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_25 . CDS 52501 52726 . - 0 ID=Phyra94817;Parent=Phyra94817;rank=2 scaffold_25 . exon 52501 52726 . - . ID=Phyra94817.2;Parent=Phyra94817;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 52791 53074 . - 0 ID=Phyra94817;Parent=Phyra94817;rank=1 scaffold_25 . exon 52791 53074 . - . ID=Phyra94817.1;Parent=Phyra94817;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . biological_region 60933 60937 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 68520 69090 . - . ID=Phyra45678;biotype=protein_coding;external_name=gwEuk.25.147.1;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 68520 69090 . - . ID=Phyra45678;Parent=Phyra45678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 68520 68738 . - 0 ID=Phyra45678;Parent=Phyra45678;rank=2 scaffold_25 . exon 68520 68738 . - . ID=Phyra45678.2;Parent=Phyra45678;constitutive=1;rank=2 scaffold_25 . CDS 68815 69090 . - 0 ID=Phyra45678;Parent=Phyra45678;rank=1 scaffold_25 . exon 68815 69090 . - . ID=Phyra45678.1;Parent=Phyra45678;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 60797 62539 . + . ID=Phyra71525;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_25000001;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 60797 62539 . + . ID=Phyra71525;Parent=Phyra71525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 60797 62539 . + 0 ID=Phyra71525;Parent=Phyra71525;rank=1 scaffold_25 . exon 60797 62539 . + . ID=Phyra71525.1;Parent=Phyra71525;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 62973 64512 . + . ID=Phyra77498;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000019;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 62973 64512 . + . ID=Phyra77498;Parent=Phyra77498;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 62973 64100 . + 0 ID=Phyra77498;Parent=Phyra77498;rank=1 scaffold_25 . exon 62973 64100 . + . ID=Phyra77498.1;Parent=Phyra77498;constitutive=1;rank=1 scaffold_25 . CDS 64168 64512 . + 0 ID=Phyra77498;Parent=Phyra77498;rank=2 scaffold_25 . exon 64168 64512 . + . ID=Phyra77498.2;Parent=Phyra77498;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 69442 70338 . + . ID=Phyra77500;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000021;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 69442 70338 . + . ID=Phyra77500;Parent=Phyra77500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 69442 69685 . + 0 ID=Phyra77500;Parent=Phyra77500;rank=1 scaffold_25 . exon 69442 69685 . + . ID=Phyra77500.1;Parent=Phyra77500;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 69757 69967 . + 0 ID=Phyra77500;Parent=Phyra77500;rank=2 scaffold_25 . CDS 70035 70338 . + 0 ID=Phyra77500;Parent=Phyra77500;rank=3 scaffold_25 . repeat_region 71654 71697 . ? . description=trf scaffold_25 . repeat_region 71658 71703 . ? . description=trf scaffold_25 ensembl protein_coding_gene 75622 76359 . - . ID=Phyra45684;biotype=protein_coding;external_name=gwEuk.25.153.1;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 75622 76359 . - . ID=Phyra45684;Parent=Phyra45684;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 75622 75728 . - 0 ID=Phyra45684;Parent=Phyra45684;rank=5 scaffold_25 . exon 75622 75728 . - . ID=Phyra45684.5;Parent=Phyra45684;constitutive=1;ensembl_phase=1;rank=5 scaffold_25 . CDS 75810 75957 . - 0 ID=Phyra45684;Parent=Phyra45684;rank=4 scaffold_25 . exon 75810 75957 . - . ID=Phyra45684.4;Parent=Phyra45684;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_25 . CDS 76043 76087 . - 0 ID=Phyra45684;Parent=Phyra45684;rank=3 scaffold_25 . exon 76043 76087 . - . ID=Phyra45684.3;Parent=Phyra45684;constitutive=1;rank=3 scaffold_25 . CDS 76157 76219 . - 0 ID=Phyra45684;Parent=Phyra45684;rank=2 scaffold_25 . exon 76157 76219 . - . ID=Phyra45684.2;Parent=Phyra45684;constitutive=1;rank=2 scaffold_25 . CDS 76276 76359 . - 0 ID=Phyra45684;Parent=Phyra45684;rank=1 scaffold_25 . exon 76276 76359 . - . ID=Phyra45684.1;Parent=Phyra45684;constitutive=1;rank=1 scaffold_25 . exon 69757 69967 . + . ID=Phyra77500.2;Parent=Phyra77500;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_25 . exon 70035 70338 . + . ID=Phyra77500.3;Parent=Phyra77500;constitutive=1;ensembl_phase=2;rank=3 scaffold_25 ensembl protein_coding_gene 71455 72150 . - . ID=Phyra77501;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000022;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 71455 72150 . - . ID=Phyra77501;Parent=Phyra77501;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 71455 72150 . - 0 ID=Phyra77501;Parent=Phyra77501;rank=1 scaffold_25 . exon 71455 72150 . - . ID=Phyra77501.1;Parent=Phyra77501;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 73492 75257 . + . ID=Phyra77502;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000023;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 73492 75257 . + . ID=Phyra77502;Parent=Phyra77502;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 73492 73553 . + 0 ID=Phyra77502;Parent=Phyra77502;rank=1 scaffold_25 . exon 73492 73553 . + . ID=Phyra77502.1;Parent=Phyra77502;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 73654 73801 . + 0 ID=Phyra77502;Parent=Phyra77502;rank=2 scaffold_25 . exon 73654 73801 . + . ID=Phyra77502.2;Parent=Phyra77502;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 73903 74012 . + 0 ID=Phyra77502;Parent=Phyra77502;rank=3 scaffold_25 . exon 73903 74012 . + . ID=Phyra77502.3;Parent=Phyra77502;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_25 . CDS 74087 74366 . + 0 ID=Phyra77502;Parent=Phyra77502;rank=4 scaffold_25 . exon 74087 74366 . + . ID=Phyra77502.4;Parent=Phyra77502;constitutive=1;ensembl_phase=2;rank=4 scaffold_25 . CDS 74428 74907 . + 0 ID=Phyra77502;Parent=Phyra77502;rank=5 scaffold_25 . exon 74428 74907 . + . ID=Phyra77502.5;Parent=Phyra77502;constitutive=1;rank=5 scaffold_25 . CDS 74972 75130 . + 0 ID=Phyra77502;Parent=Phyra77502;rank=6 scaffold_25 . exon 74972 75130 . + . ID=Phyra77502.6;Parent=Phyra77502;constitutive=1;rank=6 scaffold_25 . CDS 75201 75257 . + 0 ID=Phyra77502;Parent=Phyra77502;rank=7 scaffold_25 . exon 75201 75257 . + . ID=Phyra77502.7;Parent=Phyra77502;constitutive=1;rank=7 scaffold_25 ensembl protein_coding_gene 76895 77991 . - . ID=Phyra94820;biotype=protein_coding;external_name=C_scaffold_25000005;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 76895 77991 . - . ID=Phyra94820;Parent=Phyra94820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 76895 77421 . - 0 ID=Phyra94820;Parent=Phyra94820;rank=4 scaffold_25 . exon 76895 77421 . - . ID=Phyra94820.4;Parent=Phyra94820;constitutive=1;ensembl_phase=1;rank=4 scaffold_25 . CDS 77503 77685 . - 0 ID=Phyra94820;Parent=Phyra94820;rank=3 scaffold_25 . exon 77503 77685 . - . ID=Phyra94820.3;Parent=Phyra94820;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 77763 77824 . - 0 ID=Phyra94820;Parent=Phyra94820;rank=2 scaffold_25 . exon 77763 77824 . - . ID=Phyra94820.2;Parent=Phyra94820;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 77894 77991 . - 0 ID=Phyra94820;Parent=Phyra94820;rank=1 scaffold_25 . exon 77894 77991 . - . ID=Phyra94820.1;Parent=Phyra94820;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . repeat_region 79975 79988 . ? . description=dust scaffold_25 . biological_region 80027 80028 0.999 + . logic_name=eponine scaffold_25 . biological_region 80102 80105 0.999 + . logic_name=eponine scaffold_25 . repeat_region 81031 81063 . ? . description=dust scaffold_25 . repeat_region 82378 82390 . ? . description=dust scaffold_25 . repeat_region 83058 83071 . ? . description=dust scaffold_25 . repeat_region 84250 84258 . ? . description=dust scaffold_25 . repeat_region 84576 84583 . ? . description=dust scaffold_25 . repeat_region 84918 84941 . ? . description=dust scaffold_25 . repeat_region 85711 85722 . ? . description=dust scaffold_25 . repeat_region 96111 96161 . ? . description=trf scaffold_25 ensembl protein_coding_gene 92238 92546 . - . ID=Phyra77505;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000026;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 92238 92546 . - . ID=Phyra77505;Parent=Phyra77505;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 92238 92546 . - 0 ID=Phyra77505;Parent=Phyra77505;rank=1 scaffold_25 . exon 92238 92546 . - . ID=Phyra77505.1;Parent=Phyra77505;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 93189 96605 . + . ID=Phyra77506;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000027;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 93189 96605 . + . ID=Phyra77506;Parent=Phyra77506;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 93189 96605 . + 0 ID=Phyra77506;Parent=Phyra77506;rank=1 scaffold_25 . exon 93189 96605 . + . ID=Phyra77506.1;Parent=Phyra77506;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 96998 98734 . + . ID=Phyra77507;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000028;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 96998 98734 . + . ID=Phyra77507;Parent=Phyra77507;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 96998 98734 . + 0 ID=Phyra77507;Parent=Phyra77507;rank=1 scaffold_25 . exon 96998 98734 . + . ID=Phyra77507.1;Parent=Phyra77507;constitutive=1;rank=1 scaffold_25 . biological_region 102493 102494 0.999 + . logic_name=eponine scaffold_25 . biological_region 103058 103060 0.999 + . logic_name=eponine scaffold_25 . biological_region 103342 103343 0.999 + . logic_name=eponine scaffold_25 . repeat_region 103702 103735 . ? . description=dust scaffold_25 . repeat_region 103809 103832 . ? . description=dust scaffold_25 . biological_region 104216 104220 0.999 + . logic_name=eponine scaffold_25 . biological_region 104592 104595 0.999 - . logic_name=eponine scaffold_25 . biological_region 105783 105791 0.999 + . logic_name=eponine scaffold_25 . biological_region 105810 105821 0.999 + . logic_name=eponine scaffold_25 . biological_region 105815 105819 0.999 - . logic_name=eponine scaffold_25 . biological_region 105869 105875 0.999 + . logic_name=eponine scaffold_25 . biological_region 105872 105884 0.999 - . logic_name=eponine scaffold_25 . biological_region 105902 105904 0.999 - . logic_name=eponine scaffold_25 . biological_region 105935 105937 0.999 + . logic_name=eponine scaffold_25 . biological_region 105945 105946 0.999 - . logic_name=eponine scaffold_25 . biological_region 105963 105969 0.999 - . logic_name=eponine scaffold_25 . biological_region 106018 106023 0.999 + . logic_name=eponine scaffold_25 . repeat_region 106746 106767 . ? . description=dust scaffold_25 . repeat_region 108706 108713 . ? . description=dust scaffold_25 . biological_region 109236 109240 0.999 - . logic_name=eponine scaffold_25 . biological_region 109237 109244 0.999 + . logic_name=eponine scaffold_25 . biological_region 109270 109276 0.999 - . logic_name=eponine scaffold_25 . biological_region 109295 109299 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 100819 104165 . - . ID=Phyra77508;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000029;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 100819 104165 . - . ID=Phyra77508;Parent=Phyra77508;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 100819 103521 . - 0 ID=Phyra77508;Parent=Phyra77508;rank=4 scaffold_25 . exon 100819 103521 . - . ID=Phyra77508.4;Parent=Phyra77508;constitutive=1;rank=4 scaffold_25 . CDS 103604 103806 . - 0 ID=Phyra77508;Parent=Phyra77508;rank=3 scaffold_25 . exon 103604 103806 . - . ID=Phyra77508.3;Parent=Phyra77508;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 103881 103959 . - 0 ID=Phyra77508;Parent=Phyra77508;rank=2 scaffold_25 . exon 103881 103959 . - . ID=Phyra77508.2;Parent=Phyra77508;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 104022 104165 . - 0 ID=Phyra77508;Parent=Phyra77508;rank=1 scaffold_25 . exon 104022 104165 . - . ID=Phyra77508.1;Parent=Phyra77508;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 105766 106524 . + . ID=Phyra77509;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000030;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 105766 106524 . + . ID=Phyra77509;Parent=Phyra77509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 105766 106524 . + 0 ID=Phyra77509;Parent=Phyra77509;rank=1 scaffold_25 . exon 105766 106524 . + . ID=Phyra77509.1;Parent=Phyra77509;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 107296 109431 . - . ID=Phyra77510;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000031;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 107296 109431 . - . ID=Phyra77510;Parent=Phyra77510;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 107296 108552 . - 0 ID=Phyra77510;Parent=Phyra77510;rank=3 scaffold_25 . exon 107296 108552 . - . ID=Phyra77510.3;Parent=Phyra77510;constitutive=1;rank=3 scaffold_25 . CDS 108619 108693 . - 0 ID=Phyra77510;Parent=Phyra77510;rank=2 scaffold_25 . exon 108619 108693 . - . ID=Phyra77510.2;Parent=Phyra77510;constitutive=1;rank=2 scaffold_25 . CDS 108760 109431 . - 0 ID=Phyra77510;Parent=Phyra77510;rank=1 scaffold_25 . exon 108760 109431 . - . ID=Phyra77510.1;Parent=Phyra77510;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 117432 119001 . - . ID=Phyra71527;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_25000003;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 117432 119001 . - . ID=Phyra71527;Parent=Phyra71527;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 117432 117500 . - 0 ID=Phyra71527;Parent=Phyra71527;rank=2 scaffold_25 . exon 117432 117500 . - . ID=Phyra71527.2;Parent=Phyra71527;constitutive=1;rank=2 scaffold_25 . CDS 117721 119001 . - 0 ID=Phyra71527;Parent=Phyra71527;rank=1 scaffold_25 . exon 117721 119001 . - . ID=Phyra71527.1;Parent=Phyra71527;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 109695 112023 . - . ID=Phyra77511;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000032;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 109695 112023 . - . ID=Phyra77511;Parent=Phyra77511;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 109695 110450 . - 0 ID=Phyra77511;Parent=Phyra77511;rank=5 scaffold_25 . exon 109695 110450 . - . ID=Phyra77511.5;Parent=Phyra77511;constitutive=1;rank=5 scaffold_25 . CDS 110485 110931 . - 0 ID=Phyra77511;Parent=Phyra77511;rank=4 scaffold_25 . exon 110485 110931 . - . ID=Phyra77511.4;Parent=Phyra77511;constitutive=1;rank=4 scaffold_25 . CDS 111265 111578 . - 0 ID=Phyra77511;Parent=Phyra77511;rank=3 scaffold_25 . exon 111265 111578 . - . ID=Phyra77511.3;Parent=Phyra77511;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 111774 111894 . - 0 ID=Phyra77511;Parent=Phyra77511;rank=2 scaffold_25 . exon 111774 111894 . - . ID=Phyra77511.2;Parent=Phyra77511;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 111955 112023 . - 0 ID=Phyra77511;Parent=Phyra77511;rank=1 scaffold_25 . exon 111955 112023 . - . ID=Phyra77511.1;Parent=Phyra77511;constitutive=1;rank=1 scaffold_25 . repeat_region 120682 120717 . ? . description=trf scaffold_25 . biological_region 122082 122088 0.999 - . logic_name=eponine scaffold_25 . repeat_region 122570 122633 . ? . description=dust scaffold_25 . biological_region 123490 123497 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 119407 121389 . - . ID=Phyra77513;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000034;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 119407 121389 . - . ID=Phyra77513;Parent=Phyra77513;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 119407 119457 . - 0 ID=Phyra77513;Parent=Phyra77513;rank=3 scaffold_25 . exon 119407 119457 . - . ID=Phyra77513.3;Parent=Phyra77513;constitutive=1;rank=3 scaffold_25 . CDS 119553 121241 . - 0 ID=Phyra77513;Parent=Phyra77513;rank=2 scaffold_25 . exon 119553 121241 . - . ID=Phyra77513.2;Parent=Phyra77513;constitutive=1;rank=2 scaffold_25 . CDS 121336 121389 . - 0 ID=Phyra77513;Parent=Phyra77513;rank=1 scaffold_25 . exon 121336 121389 . - . ID=Phyra77513.1;Parent=Phyra77513;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 121724 122875 . - . ID=Phyra77514;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000035;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 121724 122875 . - . ID=Phyra77514;Parent=Phyra77514;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 121724 122875 . - 0 ID=Phyra77514;Parent=Phyra77514;rank=1 scaffold_25 . exon 121724 122875 . - . ID=Phyra77514.1;Parent=Phyra77514;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 123667 124685 . + . ID=Phyra77515;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000036;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 123667 124685 . + . ID=Phyra77515;Parent=Phyra77515;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 123667 124643 . + 0 ID=Phyra77515;Parent=Phyra77515;rank=1 scaffold_25 . exon 123667 124643 . + . ID=Phyra77515.1;Parent=Phyra77515;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 124673 124685 . + 0 ID=Phyra77515;Parent=Phyra77515;rank=2 scaffold_25 . exon 124673 124685 . + . ID=Phyra77515.2;Parent=Phyra77515;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 ensembl protein_coding_gene 126522 126772 . + . ID=Phyra94821;biotype=protein_coding;external_name=C_scaffold_25000006;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 126522 126772 . + . ID=Phyra94821;Parent=Phyra94821;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 126522 126746 . + 0 ID=Phyra94821;Parent=Phyra94821;rank=1 scaffold_25 . exon 126522 126746 . + . ID=Phyra94821.1;Parent=Phyra94821;constitutive=1;rank=1 scaffold_25 . CDS 126770 126772 . + 0 ID=Phyra94821;Parent=Phyra94821;rank=2 scaffold_25 . exon 126770 126772 . + . ID=Phyra94821.2;Parent=Phyra94821;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 128084 129990 . + . ID=Phyra94822;biotype=protein_coding;external_name=C_scaffold_25000007;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 128084 129990 . + . ID=Phyra94822;Parent=Phyra94822;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 128084 128386 . + 0 ID=Phyra94822;Parent=Phyra94822;rank=1 scaffold_25 . exon 128084 128386 . + . ID=Phyra94822.1;Parent=Phyra94822;constitutive=1;rank=1 scaffold_25 . CDS 128585 129361 . + 0 ID=Phyra94822;Parent=Phyra94822;rank=2 scaffold_25 . exon 128585 129361 . + . ID=Phyra94822.2;Parent=Phyra94822;constitutive=1;rank=2 scaffold_25 . CDS 129445 129624 . + 0 ID=Phyra94822;Parent=Phyra94822;rank=3 scaffold_25 . CDS 129699 129791 . + 0 ID=Phyra94822;Parent=Phyra94822;rank=4 scaffold_25 . CDS 129871 129990 . + 0 ID=Phyra94822;Parent=Phyra94822;rank=5 scaffold_25 . repeat_region 130047 130193 . - . description=Polinton-1_PI scaffold_25 . repeat_region 130223 130265 . - . description=Polinton-1_PI scaffold_25 . repeat_region 131384 132645 . - . description=Polinton-1_PI scaffold_25 . repeat_region 132648 133291 . - . description=Polinton-1_PI scaffold_25 . repeat_region 133703 134082 . - . description=Polinton-1_PI scaffold_25 . repeat_region 134393 135594 . - . description=Polinton-1_PI scaffold_25 . repeat_region 135612 139285 . - . description=Polinton-1_PI scaffold_25 ensembl protein_coding_gene 130549 131337 . - . ID=Phyra77517;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000038;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 130549 131337 . - . ID=Phyra77517;Parent=Phyra77517;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 130549 131337 . - 0 ID=Phyra77517;Parent=Phyra77517;rank=1 scaffold_25 . exon 130549 131337 . - . ID=Phyra77517.1;Parent=Phyra77517;constitutive=1;rank=1 scaffold_25 . exon 129445 129624 . + . ID=Phyra94822.3;Parent=Phyra94822;constitutive=1;rank=3 scaffold_25 . exon 129699 129791 . + . ID=Phyra94822.4;Parent=Phyra94822;constitutive=1;rank=4 scaffold_25 . exon 129871 129990 . + . ID=Phyra94822.5;Parent=Phyra94822;constitutive=1;rank=5 scaffold_25 . repeat_region 143202 143251 . ? . description=dust scaffold_25 . biological_region 143570 143570 0.999 - . logic_name=eponine scaffold_25 . biological_region 145861 145861 0.999 + . logic_name=eponine scaffold_25 . repeat_region 146266 147305 . ? . description=dust scaffold_25 . repeat_region 147904 147918 . ? . description=dust scaffold_25 . repeat_region 148247 148296 . ? . description=dust scaffold_25 . biological_region 148994 148995 0.999 + . logic_name=eponine scaffold_25 . repeat_region 149009 149055 . + . description=(CGGA)n scaffold_25 . repeat_region 149012 149053 . ? . description=dust scaffold_25 . repeat_region 149019 149053 . ? . description=trf scaffold_25 ensembl protein_coding_gene 140705 142748 . - . ID=Phyra77518;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000039;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 140705 142748 . - . ID=Phyra77518;Parent=Phyra77518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 140705 140969 . - 0 ID=Phyra77518;Parent=Phyra77518;rank=2 scaffold_25 . exon 140705 140969 . - . ID=Phyra77518.2;Parent=Phyra77518;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 141058 142748 . - 0 ID=Phyra77518;Parent=Phyra77518;rank=1 scaffold_25 . exon 141058 142748 . - . ID=Phyra77518.1;Parent=Phyra77518;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 143276 144177 . - . ID=Phyra77519;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000040;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 143276 144177 . - . ID=Phyra77519;Parent=Phyra77519;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 143276 143369 . - 0 ID=Phyra77519;Parent=Phyra77519;rank=2 scaffold_25 . exon 143276 143369 . - . ID=Phyra77519.2;Parent=Phyra77519;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 143441 144177 . - 0 ID=Phyra77519;Parent=Phyra77519;rank=1 scaffold_25 . exon 143441 144177 . - . ID=Phyra77519.1;Parent=Phyra77519;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 144529 146185 . + . ID=Phyra77520;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000041;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 144529 146185 . + . ID=Phyra77520;Parent=Phyra77520;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 144529 144571 . + 0 ID=Phyra77520;Parent=Phyra77520;rank=1 scaffold_25 . exon 144529 144571 . + . ID=Phyra77520.1;Parent=Phyra77520;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 144634 144759 . + 0 ID=Phyra77520;Parent=Phyra77520;rank=2 scaffold_25 . exon 144634 144759 . + . ID=Phyra77520.2;Parent=Phyra77520;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 144966 145070 . + 0 ID=Phyra77520;Parent=Phyra77520;rank=3 scaffold_25 . exon 144966 145070 . + . ID=Phyra77520.3;Parent=Phyra77520;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 145148 145986 . + 0 ID=Phyra77520;Parent=Phyra77520;rank=4 scaffold_25 . exon 145148 145986 . + . ID=Phyra77520.4;Parent=Phyra77520;constitutive=1;ensembl_phase=1;rank=4 scaffold_25 . CDS 146054 146185 . + 0 ID=Phyra77520;Parent=Phyra77520;rank=5 scaffold_25 . exon 146054 146185 . + . ID=Phyra77520.5;Parent=Phyra77520;constitutive=1;rank=5 scaffold_25 ensembl protein_coding_gene 149733 154820 . + . ID=Phyra77521;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000042;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 149733 154820 . + . ID=Phyra77521;Parent=Phyra77521;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 149733 154820 . + 0 ID=Phyra77521;Parent=Phyra77521;rank=1 scaffold_25 . exon 149733 154820 . + . ID=Phyra77521.1;Parent=Phyra77521;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 155936 157437 . + . ID=Phyra77522;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000043;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 155936 157437 . + . ID=Phyra77522;Parent=Phyra77522;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 155936 156053 . + 0 ID=Phyra77522;Parent=Phyra77522;rank=1 scaffold_25 . exon 155936 156053 . + . ID=Phyra77522.1;Parent=Phyra77522;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 156126 156241 . + 0 ID=Phyra77522;Parent=Phyra77522;rank=2 scaffold_25 . exon 156126 156241 . + . ID=Phyra77522.2;Parent=Phyra77522;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 156330 156560 . + 0 ID=Phyra77522;Parent=Phyra77522;rank=3 scaffold_25 . exon 156330 156560 . + . ID=Phyra77522.3;Parent=Phyra77522;constitutive=1;rank=3 scaffold_25 . CDS 156629 156900 . + 0 ID=Phyra77522;Parent=Phyra77522;rank=4 scaffold_25 . exon 156629 156900 . + . ID=Phyra77522.4;Parent=Phyra77522;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_25 . CDS 156984 157021 . + 0 ID=Phyra77522;Parent=Phyra77522;rank=5 scaffold_25 . exon 156984 157021 . + . ID=Phyra77522.5;Parent=Phyra77522;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_25 . CDS 157081 157123 . + 0 ID=Phyra77522;Parent=Phyra77522;rank=6 scaffold_25 . exon 157081 157123 . + . ID=Phyra77522.6;Parent=Phyra77522;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_25 . CDS 157200 157437 . + 0 ID=Phyra77522;Parent=Phyra77522;rank=7 scaffold_25 . exon 157200 157437 . + . ID=Phyra77522.7;Parent=Phyra77522;constitutive=1;ensembl_phase=2;rank=7 scaffold_25 ensembl protein_coding_gene 157632 160490 . - . ID=Phyra77523;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000044;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 157632 160490 . - . ID=Phyra77523;Parent=Phyra77523;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 157632 160490 . - 0 ID=Phyra77523;Parent=Phyra77523;rank=1 scaffold_25 . exon 157632 160490 . - . ID=Phyra77523.1;Parent=Phyra77523;constitutive=1;rank=1 scaffold_25 . biological_region 164216 164217 0.999 - . logic_name=eponine scaffold_25 . biological_region 164433 164438 0.999 + . logic_name=eponine scaffold_25 . biological_region 165209 165213 0.999 - . logic_name=eponine scaffold_25 . biological_region 165266 165269 0.999 + . logic_name=eponine scaffold_25 . biological_region 167168 167171 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 161767 164871 . - . ID=Phyra77524;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000045;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 161767 164871 . - . ID=Phyra77524;Parent=Phyra77524;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 161767 164871 . - 0 ID=Phyra77524;Parent=Phyra77524;rank=1 scaffold_25 . exon 161767 164871 . - . ID=Phyra77524.1;Parent=Phyra77524;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 165065 165802 . - . ID=Phyra77525;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000046;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 165065 165802 . - . ID=Phyra77525;Parent=Phyra77525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 165065 165802 . - 0 ID=Phyra77525;Parent=Phyra77525;rank=1 scaffold_25 . exon 165065 165802 . - . ID=Phyra77525.1;Parent=Phyra77525;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 166705 168867 . + . ID=Phyra94824;biotype=protein_coding;external_name=C_scaffold_25000009;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 166705 168867 . + . ID=Phyra94824;Parent=Phyra94824;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 166705 167121 . + 0 ID=Phyra94824;Parent=Phyra94824;rank=1 scaffold_25 . exon 166705 167121 . + . ID=Phyra94824.1;Parent=Phyra94824;constitutive=1;rank=1 scaffold_25 . CDS 167305 167520 . + 0 ID=Phyra94824;Parent=Phyra94824;rank=2 scaffold_25 . exon 167305 167520 . + . ID=Phyra94824.2;Parent=Phyra94824;constitutive=1;rank=2 scaffold_25 . CDS 167594 167690 . + 0 ID=Phyra94824;Parent=Phyra94824;rank=3 scaffold_25 . exon 167594 167690 . + . ID=Phyra94824.3;Parent=Phyra94824;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_25 . CDS 167765 168743 . + 0 ID=Phyra94824;Parent=Phyra94824;rank=4 scaffold_25 . exon 167765 168743 . + . ID=Phyra94824.4;Parent=Phyra94824;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_25 . CDS 168774 168867 . + 0 ID=Phyra94824;Parent=Phyra94824;rank=5 scaffold_25 . exon 168774 168867 . + . ID=Phyra94824.5;Parent=Phyra94824;constitutive=1;ensembl_phase=2;rank=5 scaffold_25 . repeat_region 169629 169636 . ? . description=dust scaffold_25 . repeat_region 169685 169697 . ? . description=dust scaffold_25 ensembl protein_coding_gene 176414 177034 . - . ID=Phyra71528;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_25000004;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 176414 177034 . - . ID=Phyra71528;Parent=Phyra71528;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 176414 177034 . - 0 ID=Phyra71528;Parent=Phyra71528;rank=1 scaffold_25 . exon 176414 177034 . - . ID=Phyra71528.1;Parent=Phyra71528;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 177273 178272 . + . ID=Phyra71529;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_25000005;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 177273 178272 . + . ID=Phyra71529;Parent=Phyra71529;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 177273 177581 . + 0 ID=Phyra71529;Parent=Phyra71529;rank=1 scaffold_25 . exon 177273 177581 . + . ID=Phyra71529.1;Parent=Phyra71529;constitutive=1;rank=1 scaffold_25 . CDS 177642 177867 . + 0 ID=Phyra71529;Parent=Phyra71529;rank=2 scaffold_25 . exon 177642 177867 . + . ID=Phyra71529.2;Parent=Phyra71529;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 177950 178272 . + 0 ID=Phyra71529;Parent=Phyra71529;rank=3 scaffold_25 . exon 177950 178272 . + . ID=Phyra71529.3;Parent=Phyra71529;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 ensembl protein_coding_gene 168977 169617 . - . ID=Phyra77527;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000048;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 168977 169617 . - . ID=Phyra77527;Parent=Phyra77527;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 168977 169490 . - 0 ID=Phyra77527;Parent=Phyra77527;rank=2 scaffold_25 . exon 168977 169490 . - . ID=Phyra77527.2;Parent=Phyra77527;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 169562 169617 . - 0 ID=Phyra77527;Parent=Phyra77527;rank=1 scaffold_25 . exon 169562 169617 . - . ID=Phyra77527.1;Parent=Phyra77527;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 169709 173106 . - . ID=Phyra77528;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000049;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 169709 173106 . - . ID=Phyra77528;Parent=Phyra77528;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 169709 170029 . - 0 ID=Phyra77528;Parent=Phyra77528;rank=5 scaffold_25 . exon 169709 170029 . - . ID=Phyra77528.5;Parent=Phyra77528;constitutive=1;rank=5 scaffold_25 . CDS 170233 170324 . - 0 ID=Phyra77528;Parent=Phyra77528;rank=4 scaffold_25 . exon 170233 170324 . - . ID=Phyra77528.4;Parent=Phyra77528;constitutive=1;ensembl_phase=1;rank=4 scaffold_25 . CDS 170388 170559 . - 0 ID=Phyra77528;Parent=Phyra77528;rank=3 scaffold_25 . exon 170388 170559 . - . ID=Phyra77528.3;Parent=Phyra77528;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_25 . CDS 170632 172510 . - 0 ID=Phyra77528;Parent=Phyra77528;rank=2 scaffold_25 . exon 170632 172510 . - . ID=Phyra77528.2;Parent=Phyra77528;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 172574 173106 . - 0 ID=Phyra77528;Parent=Phyra77528;rank=1 scaffold_25 . exon 172574 173106 . - . ID=Phyra77528.1;Parent=Phyra77528;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 173248 174087 . - . ID=Phyra77529;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000050;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 173248 174087 . - . ID=Phyra77529;Parent=Phyra77529;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 173248 174087 . - 0 ID=Phyra77529;Parent=Phyra77529;rank=1 scaffold_25 . exon 173248 174087 . - . ID=Phyra77529.1;Parent=Phyra77529;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 175899 176228 . + . ID=Phyra77530;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000051;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 175899 176228 . + . ID=Phyra77530;Parent=Phyra77530;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 175899 176228 . + 0 ID=Phyra77530;Parent=Phyra77530;rank=1 scaffold_25 . exon 175899 176228 . + . ID=Phyra77530.1;Parent=Phyra77530;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 178463 179333 . + . ID=Phyra77533;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000054;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 178463 179333 . + . ID=Phyra77533;Parent=Phyra77533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 178463 178629 . + 0 ID=Phyra77533;Parent=Phyra77533;rank=1 scaffold_25 . exon 178463 178629 . + . ID=Phyra77533.1;Parent=Phyra77533;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 178730 179042 . + 0 ID=Phyra77533;Parent=Phyra77533;rank=2 scaffold_25 . exon 178730 179042 . + . ID=Phyra77533.2;Parent=Phyra77533;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 179160 179333 . + 0 ID=Phyra77533;Parent=Phyra77533;rank=3 scaffold_25 . repeat_region 179164 179183 . ? . description=trf scaffold_25 . biological_region 180305 180308 0.999 + . logic_name=eponine scaffold_25 . repeat_region 185780 185844 . ? . description=trf scaffold_25 . biological_region 188184 188188 0.999 + . logic_name=eponine scaffold_25 . exon 179160 179333 . + . ID=Phyra77533.3;Parent=Phyra77533;constitutive=1;rank=3 scaffold_25 ensembl protein_coding_gene 180229 181217 . + . ID=Phyra77534;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000055;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 180229 181217 . + . ID=Phyra77534;Parent=Phyra77534;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 180229 180243 . + 0 ID=Phyra77534;Parent=Phyra77534;rank=1 scaffold_25 . exon 180229 180243 . + . ID=Phyra77534.1;Parent=Phyra77534;constitutive=1;rank=1 scaffold_25 . CDS 180365 180803 . + 0 ID=Phyra77534;Parent=Phyra77534;rank=2 scaffold_25 . exon 180365 180803 . + . ID=Phyra77534.2;Parent=Phyra77534;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 180883 180935 . + 0 ID=Phyra77534;Parent=Phyra77534;rank=3 scaffold_25 . exon 180883 180935 . + . ID=Phyra77534.3;Parent=Phyra77534;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 181041 181217 . + 0 ID=Phyra77534;Parent=Phyra77534;rank=4 scaffold_25 . exon 181041 181217 . + . ID=Phyra77534.4;Parent=Phyra77534;constitutive=1;rank=4 scaffold_25 ensembl protein_coding_gene 187884 190837 . + . ID=Phyra77535;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000056;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 187884 190837 . + . ID=Phyra77535;Parent=Phyra77535;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 187884 188008 . + 0 ID=Phyra77535;Parent=Phyra77535;rank=1 scaffold_25 . exon 187884 188008 . + . ID=Phyra77535.1;Parent=Phyra77535;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 188086 190837 . + 0 ID=Phyra77535;Parent=Phyra77535;rank=2 scaffold_25 . exon 188086 190837 . + . ID=Phyra77535.2;Parent=Phyra77535;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 ensembl protein_coding_gene 198706 200596 . - . ID=Phyra77537;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000058;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 198706 200596 . - . ID=Phyra77537;Parent=Phyra77537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 198706 198801 . - 0 ID=Phyra77537;Parent=Phyra77537;rank=8 scaffold_25 . exon 198706 198801 . - . ID=Phyra77537.8;Parent=Phyra77537;constitutive=1;rank=8 scaffold_25 . CDS 198883 198953 . - 0 ID=Phyra77537;Parent=Phyra77537;rank=7 scaffold_25 . CDS 199034 199136 . - 0 ID=Phyra77537;Parent=Phyra77537;rank=6 scaffold_25 . CDS 199206 199726 . - 0 ID=Phyra77537;Parent=Phyra77537;rank=5 scaffold_25 . CDS 199801 199961 . - 0 ID=Phyra77537;Parent=Phyra77537;rank=4 scaffold_25 . CDS 200040 200199 . - 0 ID=Phyra77537;Parent=Phyra77537;rank=3 scaffold_25 . CDS 200273 200340 . - 0 ID=Phyra77537;Parent=Phyra77537;rank=2 scaffold_25 . CDS 200529 200596 . - 0 ID=Phyra77537;Parent=Phyra77537;rank=1 scaffold_25 ensembl protein_coding_gene 192007 198390 . + . ID=Phyra94827;biotype=protein_coding;external_name=C_scaffold_25000012;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 192007 198390 . + . ID=Phyra94827;Parent=Phyra94827;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 192007 192354 . + 0 ID=Phyra94827;Parent=Phyra94827;rank=1 scaffold_25 . exon 192007 192354 . + . ID=Phyra94827.1;Parent=Phyra94827;constitutive=1;rank=1 scaffold_25 . CDS 192475 192678 . + 0 ID=Phyra94827;Parent=Phyra94827;rank=2 scaffold_25 . exon 192475 192678 . + . ID=Phyra94827.2;Parent=Phyra94827;constitutive=1;rank=2 scaffold_25 . CDS 192814 193009 . + 0 ID=Phyra94827;Parent=Phyra94827;rank=3 scaffold_25 . exon 192814 193009 . + . ID=Phyra94827.3;Parent=Phyra94827;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_25 . CDS 193154 193308 . + 0 ID=Phyra94827;Parent=Phyra94827;rank=4 scaffold_25 . exon 193154 193308 . + . ID=Phyra94827.4;Parent=Phyra94827;constitutive=1;ensembl_phase=1;rank=4 scaffold_25 . CDS 193609 194109 . + 0 ID=Phyra94827;Parent=Phyra94827;rank=5 scaffold_25 . exon 193609 194109 . + . ID=Phyra94827.5;Parent=Phyra94827;constitutive=1;rank=5 scaffold_25 . CDS 194161 194321 . + 0 ID=Phyra94827;Parent=Phyra94827;rank=6 scaffold_25 . exon 194161 194321 . + . ID=Phyra94827.6;Parent=Phyra94827;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_25 . CDS 194361 194547 . + 0 ID=Phyra94827;Parent=Phyra94827;rank=7 scaffold_25 . exon 194361 194547 . + . ID=Phyra94827.7;Parent=Phyra94827;constitutive=1;ensembl_phase=2;rank=7 scaffold_25 . CDS 194620 194857 . + 0 ID=Phyra94827;Parent=Phyra94827;rank=8 scaffold_25 . exon 194620 194857 . + . ID=Phyra94827.8;Parent=Phyra94827;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_25 . CDS 195213 195949 . + 0 ID=Phyra94827;Parent=Phyra94827;rank=9 scaffold_25 . exon 195213 195949 . + . ID=Phyra94827.9;Parent=Phyra94827;constitutive=1;ensembl_phase=1;rank=9 scaffold_25 . CDS 196010 196546 . + 0 ID=Phyra94827;Parent=Phyra94827;rank=10 scaffold_25 . exon 196010 196546 . + . ID=Phyra94827.10;Parent=Phyra94827;constitutive=1;rank=10 scaffold_25 . CDS 196592 197245 . + 0 ID=Phyra94827;Parent=Phyra94827;rank=11 scaffold_25 . exon 196592 197245 . + . ID=Phyra94827.11;Parent=Phyra94827;constitutive=1;rank=11 scaffold_25 . CDS 197310 197429 . + 0 ID=Phyra94827;Parent=Phyra94827;rank=12 scaffold_25 . exon 197310 197429 . + . ID=Phyra94827.12;Parent=Phyra94827;constitutive=1;rank=12 scaffold_25 . CDS 197489 198137 . + 0 ID=Phyra94827;Parent=Phyra94827;rank=13 scaffold_25 . exon 197489 198137 . + . ID=Phyra94827.13;Parent=Phyra94827;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_25 . CDS 198308 198390 . + 0 ID=Phyra94827;Parent=Phyra94827;rank=14 scaffold_25 . exon 198308 198390 . + . ID=Phyra94827.14;Parent=Phyra94827;constitutive=1;ensembl_phase=1;rank=14 scaffold_25 . biological_region 199324 199324 0.999 - . logic_name=eponine scaffold_25 . repeat_region 208168 208199 . ? . description=trf scaffold_25 ensembl protein_coding_gene 204237 205980 . - . ID=Phyra71530;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_25000006;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 204237 205980 . - . ID=Phyra71530;Parent=Phyra71530;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 204237 205568 . - 0 ID=Phyra71530;Parent=Phyra71530;rank=2 scaffold_25 . exon 204237 205568 . - . ID=Phyra71530.2;Parent=Phyra71530;constitutive=1;rank=2 scaffold_25 . CDS 205672 205980 . - 0 ID=Phyra71530;Parent=Phyra71530;rank=1 scaffold_25 . exon 205672 205980 . - . ID=Phyra71530.1;Parent=Phyra71530;constitutive=1;rank=1 scaffold_25 . exon 198883 198953 . - . ID=Phyra77537.7;Parent=Phyra77537;constitutive=1;ensembl_phase=1;rank=7 scaffold_25 . exon 199034 199136 . - . ID=Phyra77537.6;Parent=Phyra77537;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_25 . exon 199206 199726 . - . ID=Phyra77537.5;Parent=Phyra77537;constitutive=1;ensembl_phase=1;rank=5 scaffold_25 . exon 199801 199961 . - . ID=Phyra77537.4;Parent=Phyra77537;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_25 . exon 200040 200199 . - . ID=Phyra77537.3;Parent=Phyra77537;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_25 . exon 200273 200340 . - . ID=Phyra77537.2;Parent=Phyra77537;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_25 . exon 200529 200596 . - . ID=Phyra77537.1;Parent=Phyra77537;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 201231 202489 . - . ID=Phyra77538;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000059;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 201231 202489 . - . ID=Phyra77538;Parent=Phyra77538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 201231 201851 . - 0 ID=Phyra77538;Parent=Phyra77538;rank=4 scaffold_25 . exon 201231 201851 . - . ID=Phyra77538.4;Parent=Phyra77538;constitutive=1;rank=4 scaffold_25 . CDS 201932 202226 . - 0 ID=Phyra77538;Parent=Phyra77538;rank=3 scaffold_25 . exon 201932 202226 . - . ID=Phyra77538.3;Parent=Phyra77538;constitutive=1;ensembl_phase=2;rank=3 scaffold_25 . CDS 202289 202313 . - 0 ID=Phyra77538;Parent=Phyra77538;rank=2 scaffold_25 . exon 202289 202313 . - . ID=Phyra77538.2;Parent=Phyra77538;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_25 . CDS 202432 202489 . - 0 ID=Phyra77538;Parent=Phyra77538;rank=1 scaffold_25 . exon 202432 202489 . - . ID=Phyra77538.1;Parent=Phyra77538;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 206134 209562 . + . ID=Phyra77541;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000062;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 206134 209562 . + . ID=Phyra77541;Parent=Phyra77541;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 206134 207051 . + 0 ID=Phyra77541;Parent=Phyra77541;rank=1 scaffold_25 . exon 206134 207051 . + . ID=Phyra77541.1;Parent=Phyra77541;constitutive=1;rank=1 scaffold_25 . CDS 207132 207710 . + 0 ID=Phyra77541;Parent=Phyra77541;rank=2 scaffold_25 . exon 207132 207710 . + . ID=Phyra77541.2;Parent=Phyra77541;constitutive=1;rank=2 scaffold_25 . CDS 207775 209562 . + 0 ID=Phyra77541;Parent=Phyra77541;rank=3 scaffold_25 . exon 207775 209562 . + . ID=Phyra77541.3;Parent=Phyra77541;constitutive=1;rank=3 scaffold_25 ensembl protein_coding_gene 203016 204145 . + . ID=Phyra94831;biotype=protein_coding;external_name=C_scaffold_25000016;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 203016 204145 . + . ID=Phyra94831;Parent=Phyra94831;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 203016 203087 . + 0 ID=Phyra94831;Parent=Phyra94831;rank=1 scaffold_25 . exon 203016 203087 . + . ID=Phyra94831.1;Parent=Phyra94831;constitutive=1;rank=1 scaffold_25 . CDS 203183 203296 . + 0 ID=Phyra94831;Parent=Phyra94831;rank=2 scaffold_25 . exon 203183 203296 . + . ID=Phyra94831.2;Parent=Phyra94831;constitutive=1;rank=2 scaffold_25 . CDS 203430 203508 . + 0 ID=Phyra94831;Parent=Phyra94831;rank=3 scaffold_25 . exon 203430 203508 . + . ID=Phyra94831.3;Parent=Phyra94831;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_25 . CDS 203575 203708 . + 0 ID=Phyra94831;Parent=Phyra94831;rank=4 scaffold_25 . exon 203575 203708 . + . ID=Phyra94831.4;Parent=Phyra94831;constitutive=1;ensembl_phase=1;rank=4 scaffold_25 . CDS 203773 203850 . + 0 ID=Phyra94831;Parent=Phyra94831;rank=5 scaffold_25 . exon 203773 203850 . + . ID=Phyra94831.5;Parent=Phyra94831;constitutive=1;rank=5 scaffold_25 . CDS 203909 204145 . + 0 ID=Phyra94831;Parent=Phyra94831;rank=6 scaffold_25 . exon 203909 204145 . + . ID=Phyra94831.6;Parent=Phyra94831;constitutive=1;rank=6 scaffold_25 . repeat_region 216011 216018 . ? . description=dust scaffold_25 . repeat_region 216717 216851 . ? . description=dust scaffold_25 . repeat_region 217285 217348 . ? . description=dust scaffold_25 . repeat_region 217445 217508 . ? . description=dust scaffold_25 ensembl protein_coding_gene 209726 210889 . - . ID=Phyra77542;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000063;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 209726 210889 . - . ID=Phyra77542;Parent=Phyra77542;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 209726 210889 . - 0 ID=Phyra77542;Parent=Phyra77542;rank=1 scaffold_25 . exon 209726 210889 . - . ID=Phyra77542.1;Parent=Phyra77542;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 212852 213973 . + . ID=Phyra77543;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000064;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 212852 213973 . + . ID=Phyra77543;Parent=Phyra77543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 212852 213973 . + 0 ID=Phyra77543;Parent=Phyra77543;rank=1 scaffold_25 . exon 212852 213973 . + . ID=Phyra77543.1;Parent=Phyra77543;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 214188 217223 . - . ID=Phyra77544;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000065;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 214188 217223 . - . ID=Phyra77544;Parent=Phyra77544;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 214188 214983 . - 0 ID=Phyra77544;Parent=Phyra77544;rank=6 scaffold_25 . exon 214188 214983 . - . ID=Phyra77544.6;Parent=Phyra77544;constitutive=1;ensembl_phase=2;rank=6 scaffold_25 . CDS 215053 215141 . - 0 ID=Phyra77544;Parent=Phyra77544;rank=5 scaffold_25 . exon 215053 215141 . - . ID=Phyra77544.5;Parent=Phyra77544;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_25 . CDS 215205 215992 . - 0 ID=Phyra77544;Parent=Phyra77544;rank=4 scaffold_25 . exon 215205 215992 . - . ID=Phyra77544.4;Parent=Phyra77544;constitutive=1;ensembl_phase=1;rank=4 scaffold_25 . CDS 216099 216352 . - 0 ID=Phyra77544;Parent=Phyra77544;rank=3 scaffold_25 . exon 216099 216352 . - . ID=Phyra77544.3;Parent=Phyra77544;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_25 . CDS 216547 216665 . - 0 ID=Phyra77544;Parent=Phyra77544;rank=2 scaffold_25 . exon 216547 216665 . - . ID=Phyra77544.2;Parent=Phyra77544;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_25 . CDS 216864 217223 . - 0 ID=Phyra77544;Parent=Phyra77544;rank=1 scaffold_25 . exon 216864 217223 . - . ID=Phyra77544.1;Parent=Phyra77544;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 217689 221668 . + . ID=Phyra77545;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000066;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 217689 221668 . + . ID=Phyra77545;Parent=Phyra77545;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 217689 219398 . + 0 ID=Phyra77545;Parent=Phyra77545;rank=1 scaffold_25 . exon 217689 219398 . + . ID=Phyra77545.1;Parent=Phyra77545;constitutive=1;rank=1 scaffold_25 . CDS 219467 219645 . + 0 ID=Phyra77545;Parent=Phyra77545;rank=2 scaffold_25 . CDS 219726 220172 . + 0 ID=Phyra77545;Parent=Phyra77545;rank=3 scaffold_25 . CDS 220287 220436 . + 0 ID=Phyra77545;Parent=Phyra77545;rank=4 scaffold_25 . CDS 220505 221469 . + 0 ID=Phyra77545;Parent=Phyra77545;rank=5 scaffold_25 . CDS 221571 221668 . + 0 ID=Phyra77545;Parent=Phyra77545;rank=6 scaffold_25 . biological_region 219610 219612 0.999 + . logic_name=eponine scaffold_25 . biological_region 219825 219827 0.999 - . logic_name=eponine scaffold_25 . biological_region 221259 221262 0.999 - . logic_name=eponine scaffold_25 . biological_region 221291 221296 0.999 - . logic_name=eponine scaffold_25 . biological_region 221346 221350 0.999 + . logic_name=eponine scaffold_25 . biological_region 221840 221844 0.999 + . logic_name=eponine scaffold_25 . repeat_region 222388 222410 . ? . description=trf scaffold_25 . biological_region 222551 222552 0.999 + . logic_name=eponine scaffold_25 . biological_region 222570 222574 0.999 + . logic_name=eponine scaffold_25 . biological_region 222649 222653 0.999 + . logic_name=eponine scaffold_25 . biological_region 223353 223356 0.999 + . logic_name=eponine scaffold_25 . repeat_region 224506 224554 . ? . description=trf scaffold_25 ensembl protein_coding_gene 223293 224933 . - . ID=Phyra45543;biotype=protein_coding;external_name=gwEuk.25.12.1;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 223293 224933 . - . ID=Phyra45543;Parent=Phyra45543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 223293 223898 . - 0 ID=Phyra45543;Parent=Phyra45543;rank=2 scaffold_25 . exon 223293 223898 . - . ID=Phyra45543.2;Parent=Phyra45543;constitutive=1;rank=2 scaffold_25 . CDS 223968 224933 . - 0 ID=Phyra45543;Parent=Phyra45543;rank=1 scaffold_25 . exon 223968 224933 . - . ID=Phyra45543.1;Parent=Phyra45543;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 226021 226620 . + . ID=Phyra45555;biotype=protein_coding;external_name=gwEuk.25.24.1;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 226021 226620 . + . ID=Phyra45555;Parent=Phyra45555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 226021 226620 . + 0 ID=Phyra45555;Parent=Phyra45555;rank=1 scaffold_25 . exon 226021 226620 . + . ID=Phyra45555.1;Parent=Phyra45555;constitutive=1;rank=1 scaffold_25 . exon 219467 219645 . + . ID=Phyra77545.2;Parent=Phyra77545;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_25 . exon 219726 220172 . + . ID=Phyra77545.3;Parent=Phyra77545;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_25 . exon 220287 220436 . + . ID=Phyra77545.4;Parent=Phyra77545;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_25 . exon 220505 221469 . + . ID=Phyra77545.5;Parent=Phyra77545;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_25 . exon 221571 221668 . + . ID=Phyra77545.6;Parent=Phyra77545;constitutive=1;ensembl_phase=1;rank=6 scaffold_25 ensembl protein_coding_gene 222117 222800 . - . ID=Phyra77546;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000067;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 222117 222800 . - . ID=Phyra77546;Parent=Phyra77546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 222117 222800 . - 0 ID=Phyra77546;Parent=Phyra77546;rank=1 scaffold_25 . exon 222117 222800 . - . ID=Phyra77546.1;Parent=Phyra77546;constitutive=1;rank=1 scaffold_25 . repeat_region 229164 229315 . ? . description=dust scaffold_25 . repeat_region 230981 231030 . ? . description=dust scaffold_25 . repeat_region 231872 231886 . ? . description=dust scaffold_25 ensembl protein_coding_gene 228600 229157 . + . ID=Phyra45561;biotype=protein_coding;external_name=gwEuk.25.30.1;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 228600 229157 . + . ID=Phyra45561;Parent=Phyra45561;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 228600 229157 . + 0 ID=Phyra45561;Parent=Phyra45561;rank=1 scaffold_25 . exon 228600 229157 . + . ID=Phyra45561.1;Parent=Phyra45561;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 229543 230456 . - . ID=Phyra77551;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000072;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 229543 230456 . - . ID=Phyra77551;Parent=Phyra77551;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 229543 229547 . - 0 ID=Phyra77551;Parent=Phyra77551;rank=2 scaffold_25 . exon 229543 229547 . - . ID=Phyra77551.2;Parent=Phyra77551;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 229577 230456 . - 0 ID=Phyra77551;Parent=Phyra77551;rank=1 scaffold_25 . exon 229577 230456 . - . ID=Phyra77551.1;Parent=Phyra77551;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 232447 234264 . + . ID=Phyra77552;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000073;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 232447 234264 . + . ID=Phyra77552;Parent=Phyra77552;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 232447 234264 . + 0 ID=Phyra77552;Parent=Phyra77552;rank=1 scaffold_25 . exon 232447 234264 . + . ID=Phyra77552.1;Parent=Phyra77552;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 234341 236596 . - . ID=Phyra77553;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000074;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 234341 236596 . - . ID=Phyra77553;Parent=Phyra77553;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 234341 236596 . - 0 ID=Phyra77553;Parent=Phyra77553;rank=1 scaffold_25 . exon 234341 236596 . - . ID=Phyra77553.1;Parent=Phyra77553;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 236806 239252 . + . ID=Phyra94838;biotype=protein_coding;external_name=C_scaffold_25000023;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 236806 239252 . + . ID=Phyra94838;Parent=Phyra94838;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 236806 238890 . + 0 ID=Phyra94838;Parent=Phyra94838;rank=1 scaffold_25 . exon 236806 238890 . + . ID=Phyra94838.1;Parent=Phyra94838;constitutive=1;rank=1 scaffold_25 . CDS 239250 239252 . + 0 ID=Phyra94838;Parent=Phyra94838;rank=2 scaffold_25 . biological_region 242783 242786 0.999 - . logic_name=eponine scaffold_25 . biological_region 242839 242842 0.999 + . logic_name=eponine scaffold_25 . biological_region 246244 246246 0.999 + . logic_name=eponine scaffold_25 . repeat_region 246727 246779 . ? . description=trf scaffold_25 . repeat_region 246741 246779 . ? . description=trf scaffold_25 ensembl protein_coding_gene 241459 245035 . + . ID=Phyra77555;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000076;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 241459 245035 . + . ID=Phyra77555;Parent=Phyra77555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 241459 241554 . + 0 ID=Phyra77555;Parent=Phyra77555;rank=1 scaffold_25 . exon 241459 241554 . + . ID=Phyra77555.1;Parent=Phyra77555;constitutive=1;rank=1 scaffold_25 . CDS 241591 242560 . + 0 ID=Phyra77555;Parent=Phyra77555;rank=2 scaffold_25 . exon 241591 242560 . + . ID=Phyra77555.2;Parent=Phyra77555;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 242591 244824 . + 0 ID=Phyra77555;Parent=Phyra77555;rank=3 scaffold_25 . exon 242591 244824 . + . ID=Phyra77555.3;Parent=Phyra77555;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 244892 245035 . + 0 ID=Phyra77555;Parent=Phyra77555;rank=4 scaffold_25 . exon 244892 245035 . + . ID=Phyra77555.4;Parent=Phyra77555;constitutive=1;rank=4 scaffold_25 ensembl protein_coding_gene 245317 246471 . - . ID=Phyra77556;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000077;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 245317 246471 . - . ID=Phyra77556;Parent=Phyra77556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 245317 246471 . - 0 ID=Phyra77556;Parent=Phyra77556;rank=1 scaffold_25 . exon 245317 246471 . - . ID=Phyra77556.1;Parent=Phyra77556;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 247239 248039 . - . ID=Phyra77557;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000078;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 247239 248039 . - . ID=Phyra77557;Parent=Phyra77557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 247239 247832 . - 0 ID=Phyra77557;Parent=Phyra77557;rank=2 scaffold_25 . exon 247239 247832 . - . ID=Phyra77557.2;Parent=Phyra77557;constitutive=1;rank=2 scaffold_25 . CDS 247908 248039 . - 0 ID=Phyra77557;Parent=Phyra77557;rank=1 scaffold_25 . exon 247908 248039 . - . ID=Phyra77557.1;Parent=Phyra77557;constitutive=1;rank=1 scaffold_25 . exon 239250 239252 . + . ID=Phyra94838.2;Parent=Phyra94838;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 253686 254705 . + . ID=Phyra77558;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000079;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 253686 254705 . + . ID=Phyra77558;Parent=Phyra77558;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 253686 254705 . + 0 ID=Phyra77558;Parent=Phyra77558;rank=1 scaffold_25 . exon 253686 254705 . + . ID=Phyra77558.1;Parent=Phyra77558;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 257308 258516 . - . ID=Phyra77559;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000080;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 257308 258516 . - . ID=Phyra77559;Parent=Phyra77559;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 257308 258516 . - 0 ID=Phyra77559;Parent=Phyra77559;rank=1 scaffold_25 . exon 257308 258516 . - . ID=Phyra77559.1;Parent=Phyra77559;constitutive=1;rank=1 scaffold_25 . repeat_region 258389 258425 . ? . description=trf scaffold_25 . biological_region 258424 258426 0.999 + . logic_name=eponine scaffold_25 . biological_region 260457 260462 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 260760 261705 . + . ID=Phyra94839;biotype=protein_coding;external_name=C_scaffold_25000024;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 260760 261705 . + . ID=Phyra94839;Parent=Phyra94839;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 260760 261123 . + 0 ID=Phyra94839;Parent=Phyra94839;rank=1 scaffold_25 . exon 260760 261123 . + . ID=Phyra94839.1;Parent=Phyra94839;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 261193 261337 . + 0 ID=Phyra94839;Parent=Phyra94839;rank=2 scaffold_25 . exon 261193 261337 . + . ID=Phyra94839.2;Parent=Phyra94839;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_25 . CDS 261660 261705 . + 0 ID=Phyra94839;Parent=Phyra94839;rank=3 scaffold_25 . exon 261660 261705 . + . ID=Phyra94839.3;Parent=Phyra94839;constitutive=1;ensembl_phase=2;rank=3 scaffold_25 . repeat_region 277077 277084 . ? . description=dust scaffold_25 ensembl protein_coding_gene 269221 270756 . - . ID=Phyra77561;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000082;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 269221 270756 . - . ID=Phyra77561;Parent=Phyra77561;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 269221 269585 . - 0 ID=Phyra77561;Parent=Phyra77561;rank=2 scaffold_25 . exon 269221 269585 . - . ID=Phyra77561.2;Parent=Phyra77561;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 269658 270756 . - 0 ID=Phyra77561;Parent=Phyra77561;rank=1 scaffold_25 . exon 269658 270756 . - . ID=Phyra77561.1;Parent=Phyra77561;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 274818 279545 . + . ID=Phyra77562;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000083;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 274818 279545 . + . ID=Phyra77562;Parent=Phyra77562;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 274818 279545 . + 0 ID=Phyra77562;Parent=Phyra77562;rank=1 scaffold_25 . exon 274818 279545 . + . ID=Phyra77562.1;Parent=Phyra77562;constitutive=1;rank=1 scaffold_25 . biological_region 280573 280575 0.999 - . logic_name=eponine scaffold_25 . biological_region 280606 280610 0.999 - . logic_name=eponine scaffold_25 . biological_region 282826 282827 0.999 + . logic_name=eponine scaffold_25 . biological_region 284956 284956 0.999 - . logic_name=eponine scaffold_25 ensembl protein_coding_gene 280508 283135 . + . ID=Phyra77563;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000084;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 280508 283135 . + . ID=Phyra77563;Parent=Phyra77563;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 280508 283135 . + 0 ID=Phyra77563;Parent=Phyra77563;rank=1 scaffold_25 . exon 280508 283135 . + . ID=Phyra77563.1;Parent=Phyra77563;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 285376 288249 . - . ID=Phyra77564;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000085;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 285376 288249 . - . ID=Phyra77564;Parent=Phyra77564;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 285376 285378 . - 0 ID=Phyra77564;Parent=Phyra77564;rank=9 scaffold_25 . exon 285376 285378 . - . ID=Phyra77564.9;Parent=Phyra77564;constitutive=1;rank=9 scaffold_25 . CDS 285404 285552 . - 0 ID=Phyra77564;Parent=Phyra77564;rank=8 scaffold_25 . exon 285404 285552 . - . ID=Phyra77564.8;Parent=Phyra77564;constitutive=1;ensembl_phase=1;rank=8 scaffold_25 . CDS 285610 285720 . - 0 ID=Phyra77564;Parent=Phyra77564;rank=7 scaffold_25 . exon 285610 285720 . - . ID=Phyra77564.7;Parent=Phyra77564;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_25 . CDS 285911 286052 . - 0 ID=Phyra77564;Parent=Phyra77564;rank=6 scaffold_25 . exon 285911 286052 . - . ID=Phyra77564.6;Parent=Phyra77564;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_25 . CDS 286133 286429 . - 0 ID=Phyra77564;Parent=Phyra77564;rank=5 scaffold_25 . exon 286133 286429 . - . ID=Phyra77564.5;Parent=Phyra77564;constitutive=1;rank=5 scaffold_25 . CDS 286510 286853 . - 0 ID=Phyra77564;Parent=Phyra77564;rank=4 scaffold_25 . exon 286510 286853 . - . ID=Phyra77564.4;Parent=Phyra77564;constitutive=1;ensembl_phase=1;rank=4 scaffold_25 . CDS 286923 287028 . - 0 ID=Phyra77564;Parent=Phyra77564;rank=3 scaffold_25 . exon 286923 287028 . - . ID=Phyra77564.3;Parent=Phyra77564;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_25 . CDS 287085 288101 . - 0 ID=Phyra77564;Parent=Phyra77564;rank=2 scaffold_25 . exon 287085 288101 . - . ID=Phyra77564.2;Parent=Phyra77564;constitutive=1;rank=2 scaffold_25 . CDS 288241 288249 . - 0 ID=Phyra77564;Parent=Phyra77564;rank=1 scaffold_25 . exon 288241 288249 . - . ID=Phyra77564.1;Parent=Phyra77564;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 296268 297886 . - . ID=Phyra77565;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000086;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 296268 297886 . - . ID=Phyra77565;Parent=Phyra77565;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 296268 296578 . - 0 ID=Phyra77565;Parent=Phyra77565;rank=6 scaffold_25 . exon 296268 296578 . - . ID=Phyra77565.6;Parent=Phyra77565;constitutive=1;ensembl_phase=1;rank=6 scaffold_25 . CDS 296661 296837 . - 0 ID=Phyra77565;Parent=Phyra77565;rank=5 scaffold_25 . exon 296661 296837 . - . ID=Phyra77565.5;Parent=Phyra77565;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_25 . CDS 296915 296989 . - 0 ID=Phyra77565;Parent=Phyra77565;rank=4 scaffold_25 . exon 296915 296989 . - . ID=Phyra77565.4;Parent=Phyra77565;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_25 . CDS 297056 297112 . - 0 ID=Phyra77565;Parent=Phyra77565;rank=3 scaffold_25 . exon 297056 297112 . - . ID=Phyra77565.3;Parent=Phyra77565;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 297179 297302 . - 0 ID=Phyra77565;Parent=Phyra77565;rank=2 scaffold_25 . exon 297179 297302 . - . ID=Phyra77565.2;Parent=Phyra77565;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 297365 297886 . - 0 ID=Phyra77565;Parent=Phyra77565;rank=1 scaffold_25 . exon 297365 297886 . - . ID=Phyra77565.1;Parent=Phyra77565;constitutive=1;rank=1 scaffold_25 . repeat_region 302582 302589 . ? . description=dust scaffold_25 . repeat_region 305402 305436 . ? . description=trf scaffold_25 . repeat_region 305476 305483 . ? . description=dust scaffold_25 ensembl protein_coding_gene 302589 303287 . + . ID=Phyra77567;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000088;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 302589 303287 . + . ID=Phyra77567;Parent=Phyra77567;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 302589 302700 . + 0 ID=Phyra77567;Parent=Phyra77567;rank=1 scaffold_25 . exon 302589 302700 . + . ID=Phyra77567.1;Parent=Phyra77567;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 302806 303287 . + 0 ID=Phyra77567;Parent=Phyra77567;rank=2 scaffold_25 . exon 302806 303287 . + . ID=Phyra77567.2;Parent=Phyra77567;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 ensembl protein_coding_gene 305543 307237 . + . ID=Phyra77568;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000089;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 305543 307237 . + . ID=Phyra77568;Parent=Phyra77568;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 305543 307237 . + 0 ID=Phyra77568;Parent=Phyra77568;rank=1 scaffold_25 . exon 305543 307237 . + . ID=Phyra77568.1;Parent=Phyra77568;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 307634 308437 . + . ID=Phyra77569;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000090;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 307634 308437 . + . ID=Phyra77569;Parent=Phyra77569;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 307634 307789 . + 0 ID=Phyra77569;Parent=Phyra77569;rank=1 scaffold_25 . exon 307634 307789 . + . ID=Phyra77569.1;Parent=Phyra77569;constitutive=1;rank=1 scaffold_25 . CDS 307847 308049 . + 0 ID=Phyra77569;Parent=Phyra77569;rank=2 scaffold_25 . exon 307847 308049 . + . ID=Phyra77569.2;Parent=Phyra77569;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_25 . CDS 308107 308224 . + 0 ID=Phyra77569;Parent=Phyra77569;rank=3 scaffold_25 . CDS 308288 308437 . + 0 ID=Phyra77569;Parent=Phyra77569;rank=4 scaffold_25 ensembl protein_coding_gene 298361 302381 . + . ID=Phyra94840;biotype=protein_coding;external_name=C_scaffold_25000025;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 298361 302381 . + . ID=Phyra94840;Parent=Phyra94840;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 298361 298641 . + 0 ID=Phyra94840;Parent=Phyra94840;rank=1 scaffold_25 . exon 298361 298641 . + . ID=Phyra94840.1;Parent=Phyra94840;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 298740 298819 . + 0 ID=Phyra94840;Parent=Phyra94840;rank=2 scaffold_25 . exon 298740 298819 . + . ID=Phyra94840.2;Parent=Phyra94840;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 298894 298985 . + 0 ID=Phyra94840;Parent=Phyra94840;rank=3 scaffold_25 . exon 298894 298985 . + . ID=Phyra94840.3;Parent=Phyra94840;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 299113 299760 . + 0 ID=Phyra94840;Parent=Phyra94840;rank=4 scaffold_25 . exon 299113 299760 . + . ID=Phyra94840.4;Parent=Phyra94840;constitutive=1;rank=4 scaffold_25 . CDS 300099 300194 . + 0 ID=Phyra94840;Parent=Phyra94840;rank=5 scaffold_25 . exon 300099 300194 . + . ID=Phyra94840.5;Parent=Phyra94840;constitutive=1;rank=5 scaffold_25 . CDS 300271 300289 . + 0 ID=Phyra94840;Parent=Phyra94840;rank=6 scaffold_25 . exon 300271 300289 . + . ID=Phyra94840.6;Parent=Phyra94840;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_25 . CDS 300383 300548 . + 0 ID=Phyra94840;Parent=Phyra94840;rank=7 scaffold_25 . exon 300383 300548 . + . ID=Phyra94840.7;Parent=Phyra94840;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_25 . CDS 300613 300697 . + 0 ID=Phyra94840;Parent=Phyra94840;rank=8 scaffold_25 . exon 300613 300697 . + . ID=Phyra94840.8;Parent=Phyra94840;constitutive=1;ensembl_phase=2;rank=8 scaffold_25 . CDS 300768 300824 . + 0 ID=Phyra94840;Parent=Phyra94840;rank=9 scaffold_25 . exon 300768 300824 . + . ID=Phyra94840.9;Parent=Phyra94840;constitutive=1;rank=9 scaffold_25 . CDS 301539 301632 . + 0 ID=Phyra94840;Parent=Phyra94840;rank=10 scaffold_25 . exon 301539 301632 . + . ID=Phyra94840.10;Parent=Phyra94840;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_25 . CDS 301690 302232 . + 0 ID=Phyra94840;Parent=Phyra94840;rank=11 scaffold_25 . exon 301690 302232 . + . ID=Phyra94840.11;Parent=Phyra94840;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_25 . CDS 302257 302381 . + 0 ID=Phyra94840;Parent=Phyra94840;rank=12 scaffold_25 . exon 302257 302381 . + . ID=Phyra94840.12;Parent=Phyra94840;constitutive=1;ensembl_phase=1;rank=12 scaffold_25 . biological_region 312326 312328 0.999 + . logic_name=eponine scaffold_25 . exon 308107 308224 . + . ID=Phyra77569.3;Parent=Phyra77569;constitutive=1;ensembl_phase=2;rank=3 scaffold_25 . exon 308288 308437 . + . ID=Phyra77569.4;Parent=Phyra77569;constitutive=1;rank=4 scaffold_25 ensembl protein_coding_gene 313444 314504 . + . ID=Phyra77571;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000092;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 313444 314504 . + . ID=Phyra77571;Parent=Phyra77571;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 313444 313448 . + 0 ID=Phyra77571;Parent=Phyra77571;rank=1 scaffold_25 . exon 313444 313448 . + . ID=Phyra77571.1;Parent=Phyra77571;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 313805 314504 . + 0 ID=Phyra77571;Parent=Phyra77571;rank=2 scaffold_25 . exon 313805 314504 . + . ID=Phyra77571.2;Parent=Phyra77571;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 ensembl protein_coding_gene 315113 315424 . - . ID=Phyra77572;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000093;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 315113 315424 . - . ID=Phyra77572;Parent=Phyra77572;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 315113 315424 . - 0 ID=Phyra77572;Parent=Phyra77572;rank=1 scaffold_25 . exon 315113 315424 . - . ID=Phyra77572.1;Parent=Phyra77572;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 317799 319586 . + . ID=Phyra77573;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000094;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 317799 319586 . + . ID=Phyra77573;Parent=Phyra77573;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 317799 319586 . + 0 ID=Phyra77573;Parent=Phyra77573;rank=1 scaffold_25 . exon 317799 319586 . + . ID=Phyra77573.1;Parent=Phyra77573;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 311556 313017 . - . ID=Phyra94842;biotype=protein_coding;external_name=C_scaffold_25000027;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 311556 313017 . - . ID=Phyra94842;Parent=Phyra94842;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 311556 312666 . - 0 ID=Phyra94842;Parent=Phyra94842;rank=2 scaffold_25 . exon 311556 312666 . - . ID=Phyra94842.2;Parent=Phyra94842;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 312740 313017 . - 0 ID=Phyra94842;Parent=Phyra94842;rank=1 scaffold_25 . exon 312740 313017 . - . ID=Phyra94842.1;Parent=Phyra94842;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 320710 322809 . - . ID=Phyra77574;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000095;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 320710 322809 . - . ID=Phyra77574;Parent=Phyra77574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 320710 322809 . - 0 ID=Phyra77574;Parent=Phyra77574;rank=1 scaffold_25 . exon 320710 322809 . - . ID=Phyra77574.1;Parent=Phyra77574;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 325549 327884 . - . ID=Phyra77575;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000096;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 325549 327884 . - . ID=Phyra77575;Parent=Phyra77575;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 325549 325782 . - 0 ID=Phyra77575;Parent=Phyra77575;rank=10 scaffold_25 . exon 325549 325782 . - . ID=Phyra77575.10;Parent=Phyra77575;constitutive=1;rank=10 scaffold_25 . CDS 325853 325993 . - 0 ID=Phyra77575;Parent=Phyra77575;rank=9 scaffold_25 . exon 325853 325993 . - . ID=Phyra77575.9;Parent=Phyra77575;constitutive=1;rank=9 scaffold_25 . CDS 326060 326136 . - 0 ID=Phyra77575;Parent=Phyra77575;rank=8 scaffold_25 . exon 326060 326136 . - . ID=Phyra77575.8;Parent=Phyra77575;constitutive=1;ensembl_phase=1;rank=8 scaffold_25 . CDS 326213 326470 . - 0 ID=Phyra77575;Parent=Phyra77575;rank=7 scaffold_25 . exon 326213 326470 . - . ID=Phyra77575.7;Parent=Phyra77575;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_25 . CDS 326540 326677 . - 0 ID=Phyra77575;Parent=Phyra77575;rank=6 scaffold_25 . exon 326540 326677 . - . ID=Phyra77575.6;Parent=Phyra77575;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_25 . CDS 326763 326813 . - 0 ID=Phyra77575;Parent=Phyra77575;rank=5 scaffold_25 . exon 326763 326813 . - . ID=Phyra77575.5;Parent=Phyra77575;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_25 . CDS 327074 327205 . - 0 ID=Phyra77575;Parent=Phyra77575;rank=4 scaffold_25 . exon 327074 327205 . - . ID=Phyra77575.4;Parent=Phyra77575;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_25 . CDS 327266 327346 . - 0 ID=Phyra77575;Parent=Phyra77575;rank=3 scaffold_25 . exon 327266 327346 . - . ID=Phyra77575.3;Parent=Phyra77575;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 327430 327657 . - 0 ID=Phyra77575;Parent=Phyra77575;rank=2 scaffold_25 . exon 327430 327657 . - . ID=Phyra77575.2;Parent=Phyra77575;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 327755 327884 . - 0 ID=Phyra77575;Parent=Phyra77575;rank=1 scaffold_25 . exon 327755 327884 . - . ID=Phyra77575.1;Parent=Phyra77575;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . biological_region 327969 327971 0.999 + . logic_name=eponine scaffold_25 . repeat_region 329035 329088 . ? . description=trf scaffold_25 ensembl protein_coding_gene 332394 333137 . - . ID=Phyra71532;biotype=protein_coding;description=Elicitin-like protein RAL8A [Source:UniProtKB/TrEMBL%3BAcc:Q2N0B0];external_name=fgenesh1_pm.C_scaffold_25000008;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 332394 333137 . - . ID=Phyra71532;Parent=Phyra71532;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 332394 333137 . - 0 ID=Phyra71532;Parent=Phyra71532;rank=1 scaffold_25 . exon 332394 333137 . - . ID=Phyra71532.1;Parent=Phyra71532;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 333594 347864 . - . ID=Phyra77577;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000098;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 333594 347864 . - . ID=Phyra77577;Parent=Phyra77577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 333594 346833 . - 0 ID=Phyra77577;Parent=Phyra77577;rank=3 scaffold_25 . exon 333594 346833 . - . ID=Phyra77577.3;Parent=Phyra77577;constitutive=1;ensembl_phase=2;rank=3 scaffold_25 . CDS 346910 347049 . - 0 ID=Phyra77577;Parent=Phyra77577;rank=2 scaffold_25 . CDS 347118 347864 . - 0 ID=Phyra77577;Parent=Phyra77577;rank=1 scaffold_25 . repeat_region 346839 346865 . ? . description=dust scaffold_25 . exon 346910 347049 . - . ID=Phyra77577.2;Parent=Phyra77577;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_25 . exon 347118 347864 . - . ID=Phyra77577.1;Parent=Phyra77577;constitutive=1;rank=1 scaffold_25 . biological_region 347900 347902 0.999 - . logic_name=eponine scaffold_25 . biological_region 348409 348412 0.999 + . logic_name=eponine scaffold_25 . repeat_region 348681 348720 . ? . description=trf scaffold_25 . biological_region 349058 349060 0.999 + . logic_name=eponine scaffold_25 . biological_region 353588 353594 0.999 - . logic_name=eponine scaffold_25 . biological_region 353695 353696 0.999 - . logic_name=eponine scaffold_25 . biological_region 353850 353857 0.999 - . logic_name=eponine scaffold_25 . biological_region 354781 354784 0.999 - . logic_name=eponine scaffold_25 . repeat_region 355841 355873 . ? . description=trf scaffold_25 . repeat_region 356667 356969 . ? . description=trf scaffold_25 . repeat_region 357699 357719 . ? . description=trf scaffold_25 ensembl protein_coding_gene 348267 348672 . - . ID=Phyra45574;biotype=protein_coding;external_name=gwEuk.25.43.1;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 348267 348672 . - . ID=Phyra45574;Parent=Phyra45574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 348267 348560 . - 0 ID=Phyra45574;Parent=Phyra45574;rank=2 scaffold_25 . exon 348267 348560 . - . ID=Phyra45574.2;Parent=Phyra45574;constitutive=1;rank=2 scaffold_25 . CDS 348631 348672 . - 0 ID=Phyra45574;Parent=Phyra45574;rank=1 scaffold_25 . exon 348631 348672 . - . ID=Phyra45574.1;Parent=Phyra45574;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 333594 347864 . - . ID=Phyra77577;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000098;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 333594 347864 . - . ID=Phyra77577;Parent=Phyra77577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 333594 346833 . - 0 ID=Phyra77577;Parent=Phyra77577;rank=3 scaffold_25 . CDS 346910 347049 . - 0 ID=Phyra77577;Parent=Phyra77577;rank=2 scaffold_25 . CDS 347118 347864 . - 0 ID=Phyra77577;Parent=Phyra77577;rank=1 scaffold_25 ensembl protein_coding_gene 348999 350976 . + . ID=Phyra77579;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000100;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 348999 350976 . + . ID=Phyra77579;Parent=Phyra77579;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 348999 349122 . + 0 ID=Phyra77579;Parent=Phyra77579;rank=1 scaffold_25 . exon 348999 349122 . + . ID=Phyra77579.1;Parent=Phyra77579;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 349272 349469 . + 0 ID=Phyra77579;Parent=Phyra77579;rank=2 scaffold_25 . exon 349272 349469 . + . ID=Phyra77579.2;Parent=Phyra77579;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 349554 349634 . + 0 ID=Phyra77579;Parent=Phyra77579;rank=3 scaffold_25 . exon 349554 349634 . + . ID=Phyra77579.3;Parent=Phyra77579;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 349716 349784 . + 0 ID=Phyra77579;Parent=Phyra77579;rank=4 scaffold_25 . exon 349716 349784 . + . ID=Phyra77579.4;Parent=Phyra77579;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_25 . CDS 349894 349924 . + 0 ID=Phyra77579;Parent=Phyra77579;rank=5 scaffold_25 . exon 349894 349924 . + . ID=Phyra77579.5;Parent=Phyra77579;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_25 . CDS 349978 350075 . + 0 ID=Phyra77579;Parent=Phyra77579;rank=6 scaffold_25 . exon 349978 350075 . + . ID=Phyra77579.6;Parent=Phyra77579;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_25 . CDS 350148 350294 . + 0 ID=Phyra77579;Parent=Phyra77579;rank=7 scaffold_25 . exon 350148 350294 . + . ID=Phyra77579.7;Parent=Phyra77579;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_25 . CDS 350398 350646 . + 0 ID=Phyra77579;Parent=Phyra77579;rank=8 scaffold_25 . exon 350398 350646 . + . ID=Phyra77579.8;Parent=Phyra77579;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_25 . CDS 350730 350947 . + 0 ID=Phyra77579;Parent=Phyra77579;rank=9 scaffold_25 . exon 350730 350947 . + . ID=Phyra77579.9;Parent=Phyra77579;constitutive=1;ensembl_phase=1;rank=9 scaffold_25 . CDS 350971 350976 . + 0 ID=Phyra77579;Parent=Phyra77579;rank=10 scaffold_25 . exon 350971 350976 . + . ID=Phyra77579.10;Parent=Phyra77579;constitutive=1;rank=10 scaffold_25 ensembl protein_coding_gene 351428 353202 . - . ID=Phyra77580;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000101;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 351428 353202 . - . ID=Phyra77580;Parent=Phyra77580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 351428 351808 . - 0 ID=Phyra77580;Parent=Phyra77580;rank=7 scaffold_25 . exon 351428 351808 . - . ID=Phyra77580.7;Parent=Phyra77580;constitutive=1;rank=7 scaffold_25 . CDS 352028 352072 . - 0 ID=Phyra77580;Parent=Phyra77580;rank=6 scaffold_25 . exon 352028 352072 . - . ID=Phyra77580.6;Parent=Phyra77580;constitutive=1;rank=6 scaffold_25 . CDS 352150 352236 . - 0 ID=Phyra77580;Parent=Phyra77580;rank=5 scaffold_25 . exon 352150 352236 . - . ID=Phyra77580.5;Parent=Phyra77580;constitutive=1;rank=5 scaffold_25 . CDS 352312 352479 . - 0 ID=Phyra77580;Parent=Phyra77580;rank=4 scaffold_25 . exon 352312 352479 . - . ID=Phyra77580.4;Parent=Phyra77580;constitutive=1;rank=4 scaffold_25 . CDS 352560 352866 . - 0 ID=Phyra77580;Parent=Phyra77580;rank=3 scaffold_25 . exon 352560 352866 . - . ID=Phyra77580.3;Parent=Phyra77580;constitutive=1;ensembl_phase=2;rank=3 scaffold_25 . CDS 352952 353081 . - 0 ID=Phyra77580;Parent=Phyra77580;rank=2 scaffold_25 . exon 352952 353081 . - . ID=Phyra77580.2;Parent=Phyra77580;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_25 . CDS 353115 353202 . - 0 ID=Phyra77580;Parent=Phyra77580;rank=1 scaffold_25 . exon 353115 353202 . - . ID=Phyra77580.1;Parent=Phyra77580;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 353422 355922 . + . ID=Phyra77581;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000102;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 353422 355922 . + . ID=Phyra77581;Parent=Phyra77581;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 353422 355636 . + 0 ID=Phyra77581;Parent=Phyra77581;rank=1 scaffold_25 . exon 353422 355636 . + . ID=Phyra77581.1;Parent=Phyra77581;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 355711 355922 . + 0 ID=Phyra77581;Parent=Phyra77581;rank=2 scaffold_25 . exon 355711 355922 . + . ID=Phyra77581.2;Parent=Phyra77581;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 ensembl protein_coding_gene 356390 357376 . - . ID=Phyra77582;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000103;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 356390 357376 . - . ID=Phyra77582;Parent=Phyra77582;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 356390 357376 . - 0 ID=Phyra77582;Parent=Phyra77582;rank=1 scaffold_25 . exon 356390 357376 . - . ID=Phyra77582.1;Parent=Phyra77582;constitutive=1;rank=1 scaffold_25 . repeat_region 359168 359230 . ? . description=dust scaffold_25 ensembl protein_coding_gene 364662 365054 . + . ID=Phyra71533;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_25000009;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 364662 365054 . + . ID=Phyra71533;Parent=Phyra71533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 364662 365054 . + 0 ID=Phyra71533;Parent=Phyra71533;rank=1 scaffold_25 . exon 364662 365054 . + . ID=Phyra71533.1;Parent=Phyra71533;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 357864 358580 . - . ID=Phyra77583;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000104;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 357864 358580 . - . ID=Phyra77583;Parent=Phyra77583;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 357864 358580 . - 0 ID=Phyra77583;Parent=Phyra77583;rank=1 scaffold_25 . exon 357864 358580 . - . ID=Phyra77583.1;Parent=Phyra77583;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 359262 360203 . + . ID=Phyra77584;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000105;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 359262 360203 . + . ID=Phyra77584;Parent=Phyra77584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 359262 360203 . + 0 ID=Phyra77584;Parent=Phyra77584;rank=1 scaffold_25 . exon 359262 360203 . + . ID=Phyra77584.1;Parent=Phyra77584;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 360433 362048 . + . ID=Phyra77585;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000106;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 360433 362048 . + . ID=Phyra77585;Parent=Phyra77585;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 360433 360541 . + 0 ID=Phyra77585;Parent=Phyra77585;rank=1 scaffold_25 . exon 360433 360541 . + . ID=Phyra77585.1;Parent=Phyra77585;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 360572 361347 . + 0 ID=Phyra77585;Parent=Phyra77585;rank=2 scaffold_25 . exon 360572 361347 . + . ID=Phyra77585.2;Parent=Phyra77585;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 361417 361844 . + 0 ID=Phyra77585;Parent=Phyra77585;rank=3 scaffold_25 . exon 361417 361844 . + . ID=Phyra77585.3;Parent=Phyra77585;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_25 . CDS 361976 362048 . + 0 ID=Phyra77585;Parent=Phyra77585;rank=4 scaffold_25 . exon 361976 362048 . + . ID=Phyra77585.4;Parent=Phyra77585;constitutive=1;ensembl_phase=2;rank=4 scaffold_25 ensembl protein_coding_gene 362509 363264 . - . ID=Phyra77586;biotype=protein_coding;description=Elicitin-like protein RAL8B [Source:UniProtKB/TrEMBL%3BAcc:Q2N0A9];external_name=fgenesh1_pg.C_scaffold_25000107;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 362509 363264 . - . ID=Phyra77586;Parent=Phyra77586;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 362509 363264 . - 0 ID=Phyra77586;Parent=Phyra77586;rank=1 scaffold_25 . exon 362509 363264 . - . ID=Phyra77586.1;Parent=Phyra77586;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 366286 367161 . + . ID=Phyra77588;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000109;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 366286 367161 . + . ID=Phyra77588;Parent=Phyra77588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 366286 367161 . + 0 ID=Phyra77588;Parent=Phyra77588;rank=1 scaffold_25 . exon 366286 367161 . + . ID=Phyra77588.1;Parent=Phyra77588;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 367296 368615 . - . ID=Phyra94846;biotype=protein_coding;external_name=C_scaffold_25000031;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 367296 368615 . - . ID=Phyra94846;Parent=Phyra94846;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 367296 367298 . - 0 ID=Phyra94846;Parent=Phyra94846;rank=6 scaffold_25 . exon 367296 367298 . - . ID=Phyra94846.6;Parent=Phyra94846;constitutive=1;rank=6 scaffold_25 . CDS 367354 367502 . - 0 ID=Phyra94846;Parent=Phyra94846;rank=5 scaffold_25 . exon 367354 367502 . - . ID=Phyra94846.5;Parent=Phyra94846;constitutive=1;ensembl_phase=1;rank=5 scaffold_25 . CDS 367715 368121 . - 0 ID=Phyra94846;Parent=Phyra94846;rank=4 scaffold_25 . CDS 368191 368302 . - 0 ID=Phyra94846;Parent=Phyra94846;rank=3 scaffold_25 . CDS 368377 368466 . - 0 ID=Phyra94846;Parent=Phyra94846;rank=2 scaffold_25 . CDS 368561 368615 . - 0 ID=Phyra94846;Parent=Phyra94846;rank=1 scaffold_25 . biological_region 368842 368846 0.999 - . logic_name=eponine scaffold_25 . biological_region 368938 368939 0.999 + . logic_name=eponine scaffold_25 . biological_region 368976 368977 0.999 - . logic_name=eponine scaffold_25 . biological_region 370842 370844 0.999 - . logic_name=eponine scaffold_25 . biological_region 370958 370960 0.999 - . logic_name=eponine scaffold_25 ensembl protein_coding_gene 369408 371181 . - . ID=Phyra71534;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_25000010;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 369408 371181 . - . ID=Phyra71534;Parent=Phyra71534;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 369408 370442 . - 0 ID=Phyra71534;Parent=Phyra71534;rank=3 scaffold_25 . exon 369408 370442 . - . ID=Phyra71534.3;Parent=Phyra71534;constitutive=1;rank=3 scaffold_25 . CDS 370527 371005 . - 0 ID=Phyra71534;Parent=Phyra71534;rank=2 scaffold_25 . exon 370527 371005 . - . ID=Phyra71534.2;Parent=Phyra71534;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 371070 371181 . - 0 ID=Phyra71534;Parent=Phyra71534;rank=1 scaffold_25 . exon 371070 371181 . - . ID=Phyra71534.1;Parent=Phyra71534;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 368770 369260 . + . ID=Phyra77590;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000111;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 368770 369260 . + . ID=Phyra77590;Parent=Phyra77590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 368770 368901 . + 0 ID=Phyra77590;Parent=Phyra77590;rank=1 scaffold_25 . exon 368770 368901 . + . ID=Phyra77590.1;Parent=Phyra77590;constitutive=1;rank=1 scaffold_25 . CDS 368970 369260 . + 0 ID=Phyra77590;Parent=Phyra77590;rank=2 scaffold_25 . exon 368970 369260 . + . ID=Phyra77590.2;Parent=Phyra77590;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 373025 373885 . - . ID=Phyra77592;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000113;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 373025 373885 . - . ID=Phyra77592;Parent=Phyra77592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 373025 373885 . - 0 ID=Phyra77592;Parent=Phyra77592;rank=1 scaffold_25 . exon 373025 373885 . - . ID=Phyra77592.1;Parent=Phyra77592;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 376627 378241 . - . ID=Phyra77593;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000114;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 376627 378241 . - . ID=Phyra77593;Parent=Phyra77593;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 376627 377532 . - 0 ID=Phyra77593;Parent=Phyra77593;rank=2 scaffold_25 . exon 376627 377532 . - . ID=Phyra77593.2;Parent=Phyra77593;constitutive=1;rank=2 scaffold_25 . CDS 377714 378241 . - 0 ID=Phyra77593;Parent=Phyra77593;rank=1 scaffold_25 . exon 367715 368121 . - . ID=Phyra94846.4;Parent=Phyra94846;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_25 . exon 368191 368302 . - . ID=Phyra94846.3;Parent=Phyra94846;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_25 . exon 368377 368466 . - . ID=Phyra94846.2;Parent=Phyra94846;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_25 . exon 368561 368615 . - . ID=Phyra94846.1;Parent=Phyra94846;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 379282 379656 . - . ID=Phyra45586;biotype=protein_coding;external_name=gwEuk.25.55.1;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 379282 379656 . - . ID=Phyra45586;Parent=Phyra45586;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 379282 379656 . - 0 ID=Phyra45586;Parent=Phyra45586;rank=1 scaffold_25 . exon 379282 379656 . - . ID=Phyra45586.1;Parent=Phyra45586;constitutive=1;rank=1 scaffold_25 . exon 377714 378241 . - . ID=Phyra77593.1;Parent=Phyra77593;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 382370 386280 . + . ID=Phyra94849;biotype=protein_coding;external_name=C_scaffold_25000034;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 382370 386280 . + . ID=Phyra94849;Parent=Phyra94849;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 382370 382699 . + 0 ID=Phyra94849;Parent=Phyra94849;rank=1 scaffold_25 . exon 382370 382699 . + . ID=Phyra94849.1;Parent=Phyra94849;constitutive=1;rank=1 scaffold_25 . CDS 382763 383649 . + 0 ID=Phyra94849;Parent=Phyra94849;rank=2 scaffold_25 . exon 382763 383649 . + . ID=Phyra94849.2;Parent=Phyra94849;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_25 . CDS 383887 384478 . + 0 ID=Phyra94849;Parent=Phyra94849;rank=3 scaffold_25 . exon 383887 384478 . + . ID=Phyra94849.3;Parent=Phyra94849;constitutive=1;ensembl_phase=2;rank=3 scaffold_25 . CDS 385243 385393 . + 0 ID=Phyra94849;Parent=Phyra94849;rank=4 scaffold_25 . exon 385243 385393 . + . ID=Phyra94849.4;Parent=Phyra94849;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_25 . CDS 385505 385662 . + 0 ID=Phyra94849;Parent=Phyra94849;rank=5 scaffold_25 . exon 385505 385662 . + . ID=Phyra94849.5;Parent=Phyra94849;constitutive=1;ensembl_phase=1;rank=5 scaffold_25 . CDS 385869 385999 . + 0 ID=Phyra94849;Parent=Phyra94849;rank=6 scaffold_25 . exon 385869 385999 . + . ID=Phyra94849.6;Parent=Phyra94849;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_25 . CDS 386085 386280 . + 0 ID=Phyra94849;Parent=Phyra94849;rank=7 scaffold_25 . exon 386085 386280 . + . ID=Phyra94849.7;Parent=Phyra94849;constitutive=1;ensembl_phase=2;rank=7 scaffold_25 . biological_region 389776 389778 0.999 - . logic_name=eponine scaffold_25 . biological_region 390249 390253 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 388035 391985 . - . ID=Phyra94850;biotype=protein_coding;external_name=C_scaffold_25000035;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 388035 391985 . - . ID=Phyra94850;Parent=Phyra94850;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 388035 388482 . - 0 ID=Phyra94850;Parent=Phyra94850;rank=9 scaffold_25 . exon 388035 388482 . - . ID=Phyra94850.9;Parent=Phyra94850;constitutive=1;ensembl_phase=2;rank=9 scaffold_25 . CDS 388582 388850 . - 0 ID=Phyra94850;Parent=Phyra94850;rank=8 scaffold_25 . exon 388582 388850 . - . ID=Phyra94850.8;Parent=Phyra94850;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_25 . CDS 388924 389082 . - 0 ID=Phyra94850;Parent=Phyra94850;rank=7 scaffold_25 . exon 388924 389082 . - . ID=Phyra94850.7;Parent=Phyra94850;constitutive=1;rank=7 scaffold_25 . CDS 389272 389282 . - 0 ID=Phyra94850;Parent=Phyra94850;rank=6 scaffold_25 . exon 389272 389282 . - . ID=Phyra94850.6;Parent=Phyra94850;constitutive=1;ensembl_phase=1;rank=6 scaffold_25 . CDS 389355 389425 . - 0 ID=Phyra94850;Parent=Phyra94850;rank=5 scaffold_25 . exon 389355 389425 . - . ID=Phyra94850.5;Parent=Phyra94850;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_25 . CDS 389575 389767 . - 0 ID=Phyra94850;Parent=Phyra94850;rank=4 scaffold_25 . exon 389575 389767 . - . ID=Phyra94850.4;Parent=Phyra94850;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_25 . CDS 389801 390338 . - 0 ID=Phyra94850;Parent=Phyra94850;rank=3 scaffold_25 . exon 389801 390338 . - . ID=Phyra94850.3;Parent=Phyra94850;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_25 . CDS 390435 391355 . - 0 ID=Phyra94850;Parent=Phyra94850;rank=2 scaffold_25 . exon 390435 391355 . - . ID=Phyra94850.2;Parent=Phyra94850;constitutive=1;rank=2 scaffold_25 . CDS 391503 391985 . - 0 ID=Phyra94850;Parent=Phyra94850;rank=1 scaffold_25 . exon 391503 391985 . - . ID=Phyra94850.1;Parent=Phyra94850;constitutive=1;rank=1 scaffold_25 . repeat_region 399677 399697 . ? . description=trf scaffold_25 ensembl protein_coding_gene 399720 400019 . - . ID=Phyra45595;biotype=protein_coding;external_name=gwEuk.25.64.1;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 399720 400019 . - . ID=Phyra45595;Parent=Phyra45595;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 399720 400019 . - 0 ID=Phyra45595;Parent=Phyra45595;rank=1 scaffold_25 . exon 399720 400019 . - . ID=Phyra45595.1;Parent=Phyra45595;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 397799 398696 . - . ID=Phyra77597;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000118;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 397799 398696 . - . ID=Phyra77597;Parent=Phyra77597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 397799 397812 . - 0 ID=Phyra77597;Parent=Phyra77597;rank=2 scaffold_25 . exon 397799 397812 . - . ID=Phyra77597.2;Parent=Phyra77597;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 397856 398696 . - 0 ID=Phyra77597;Parent=Phyra77597;rank=1 scaffold_25 . exon 397856 398696 . - . ID=Phyra77597.1;Parent=Phyra77597;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 398839 399430 . + . ID=Phyra77598;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000119;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 398839 399430 . + . ID=Phyra77598;Parent=Phyra77598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 398839 399028 . + 0 ID=Phyra77598;Parent=Phyra77598;rank=1 scaffold_25 . exon 398839 399028 . + . ID=Phyra77598.1;Parent=Phyra77598;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 399109 399170 . + 0 ID=Phyra77598;Parent=Phyra77598;rank=2 scaffold_25 . exon 399109 399170 . + . ID=Phyra77598.2;Parent=Phyra77598;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 399293 399430 . + 0 ID=Phyra77598;Parent=Phyra77598;rank=3 scaffold_25 . exon 399293 399430 . + . ID=Phyra77598.3;Parent=Phyra77598;constitutive=1;rank=3 scaffold_25 ensembl protein_coding_gene 400327 401113 . + . ID=Phyra77600;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000121;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 400327 401113 . + . ID=Phyra77600;Parent=Phyra77600;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 400327 401014 . + 0 ID=Phyra77600;Parent=Phyra77600;rank=1 scaffold_25 . exon 400327 401014 . + . ID=Phyra77600.1;Parent=Phyra77600;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 401094 401113 . + 0 ID=Phyra77600;Parent=Phyra77600;rank=2 scaffold_25 . exon 401094 401113 . + . ID=Phyra77600.2;Parent=Phyra77600;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . biological_region 408210 408212 0.999 - . logic_name=eponine scaffold_25 . biological_region 408508 408508 0.999 - . logic_name=eponine scaffold_25 . biological_region 412065 412066 0.999 + . logic_name=eponine scaffold_25 . repeat_region 412183 412190 . ? . description=dust scaffold_25 . biological_region 414192 414197 0.999 + . logic_name=eponine scaffold_25 . biological_region 414425 414432 0.999 + . logic_name=eponine scaffold_25 . biological_region 414435 414440 0.999 - . logic_name=eponine scaffold_25 . biological_region 414456 414457 0.999 + . logic_name=eponine scaffold_25 . biological_region 414469 414473 0.999 - . logic_name=eponine scaffold_25 . biological_region 414515 414517 0.999 - . logic_name=eponine scaffold_25 . biological_region 414687 414691 0.999 + . logic_name=eponine scaffold_25 . biological_region 414880 414883 0.999 - . logic_name=eponine scaffold_25 . biological_region 415173 415176 0.999 - . logic_name=eponine scaffold_25 . biological_region 415256 415259 0.999 - . logic_name=eponine scaffold_25 . biological_region 415722 415727 0.999 - . logic_name=eponine scaffold_25 . biological_region 415744 415746 0.999 + . logic_name=eponine scaffold_25 . biological_region 415776 415782 0.999 + . logic_name=eponine scaffold_25 . biological_region 415874 415875 0.999 - . logic_name=eponine scaffold_25 ensembl protein_coding_gene 407577 408224 . - . ID=Phyra77601;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000122;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 407577 408224 . - . ID=Phyra77601;Parent=Phyra77601;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 407577 408224 . - 0 ID=Phyra77601;Parent=Phyra77601;rank=1 scaffold_25 . exon 407577 408224 . - . ID=Phyra77601.1;Parent=Phyra77601;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 408822 409757 . + . ID=Phyra77602;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000123;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 408822 409757 . + . ID=Phyra77602;Parent=Phyra77602;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 408822 409757 . + 0 ID=Phyra77602;Parent=Phyra77602;rank=1 scaffold_25 . exon 408822 409757 . + . ID=Phyra77602.1;Parent=Phyra77602;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 414315 415244 . + . ID=Phyra77603;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000124;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 414315 415244 . + . ID=Phyra77603;Parent=Phyra77603;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 414315 415244 . + 0 ID=Phyra77603;Parent=Phyra77603;rank=1 scaffold_25 . exon 414315 415244 . + . ID=Phyra77603.1;Parent=Phyra77603;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 415664 416885 . + . ID=Phyra77604;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000125;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 415664 416885 . + . ID=Phyra77604;Parent=Phyra77604;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 415664 415867 . + 0 ID=Phyra77604;Parent=Phyra77604;rank=1 scaffold_25 . exon 415664 415867 . + . ID=Phyra77604.1;Parent=Phyra77604;constitutive=1;rank=1 scaffold_25 . CDS 415959 416171 . + 0 ID=Phyra77604;Parent=Phyra77604;rank=2 scaffold_25 . exon 415959 416171 . + . ID=Phyra77604.2;Parent=Phyra77604;constitutive=1;rank=2 scaffold_25 . CDS 416235 416512 . + 0 ID=Phyra77604;Parent=Phyra77604;rank=3 scaffold_25 . exon 416235 416512 . + . ID=Phyra77604.3;Parent=Phyra77604;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_25 . CDS 416550 416694 . + 0 ID=Phyra77604;Parent=Phyra77604;rank=4 scaffold_25 . exon 416550 416694 . + . ID=Phyra77604.4;Parent=Phyra77604;constitutive=1;ensembl_phase=2;rank=4 scaffold_25 . CDS 416883 416885 . + 0 ID=Phyra77604;Parent=Phyra77604;rank=5 scaffold_25 . exon 416883 416885 . + . ID=Phyra77604.5;Parent=Phyra77604;constitutive=1;rank=5 scaffold_25 ensembl protein_coding_gene 417031 418501 . - . ID=Phyra77605;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000126;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 417031 418501 . - . ID=Phyra77605;Parent=Phyra77605;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 417031 417486 . - 0 ID=Phyra77605;Parent=Phyra77605;rank=3 scaffold_25 . exon 417031 417486 . - . ID=Phyra77605.3;Parent=Phyra77605;constitutive=1;rank=3 scaffold_25 . CDS 417555 418346 . - 0 ID=Phyra77605;Parent=Phyra77605;rank=2 scaffold_25 . CDS 418430 418501 . - 0 ID=Phyra77605;Parent=Phyra77605;rank=1 scaffold_25 . repeat_region 421772 421798 . ? . description=trf scaffold_25 . repeat_region 423997 424040 . ? . description=trf scaffold_25 ensembl protein_coding_gene 424450 426168 . + . ID=Phyra71537;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_25000013;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 424450 426168 . + . ID=Phyra71537;Parent=Phyra71537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 424450 425913 . + 0 ID=Phyra71537;Parent=Phyra71537;rank=1 scaffold_25 . exon 424450 425913 . + . ID=Phyra71537.1;Parent=Phyra71537;constitutive=1;rank=1 scaffold_25 . CDS 425995 426168 . + 0 ID=Phyra71537;Parent=Phyra71537;rank=2 scaffold_25 . exon 425995 426168 . + . ID=Phyra71537.2;Parent=Phyra71537;constitutive=1;rank=2 scaffold_25 . exon 417555 418346 . - . ID=Phyra77605.2;Parent=Phyra77605;constitutive=1;rank=2 scaffold_25 . exon 418430 418501 . - . ID=Phyra77605.1;Parent=Phyra77605;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 420168 420947 . - . ID=Phyra77606;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000127;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 420168 420947 . - . ID=Phyra77606;Parent=Phyra77606;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 420168 420947 . - 0 ID=Phyra77606;Parent=Phyra77606;rank=1 scaffold_25 . exon 420168 420947 . - . ID=Phyra77606.1;Parent=Phyra77606;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 421095 421870 . + . ID=Phyra77607;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000128;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 421095 421870 . + . ID=Phyra77607;Parent=Phyra77607;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 421095 421600 . + 0 ID=Phyra77607;Parent=Phyra77607;rank=1 scaffold_25 . exon 421095 421600 . + . ID=Phyra77607.1;Parent=Phyra77607;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 421675 421870 . + 0 ID=Phyra77607;Parent=Phyra77607;rank=2 scaffold_25 . exon 421675 421870 . + . ID=Phyra77607.2;Parent=Phyra77607;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 ensembl protein_coding_gene 421954 424257 . - . ID=Phyra77608;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000129;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 421954 424257 . - . ID=Phyra77608;Parent=Phyra77608;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 421954 424257 . - 0 ID=Phyra77608;Parent=Phyra77608;rank=1 scaffold_25 . exon 421954 424257 . - . ID=Phyra77608.1;Parent=Phyra77608;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 426610 427497 . - . ID=Phyra77610;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000131;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 426610 427497 . - . ID=Phyra77610;Parent=Phyra77610;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 426610 426988 . - 0 ID=Phyra77610;Parent=Phyra77610;rank=3 scaffold_25 . exon 426610 426988 . - . ID=Phyra77610.3;Parent=Phyra77610;constitutive=1;ensembl_phase=2;rank=3 scaffold_25 . CDS 427059 427148 . - 0 ID=Phyra77610;Parent=Phyra77610;rank=2 scaffold_25 . exon 427059 427148 . - . ID=Phyra77610.2;Parent=Phyra77610;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_25 . CDS 427217 427497 . - 0 ID=Phyra77610;Parent=Phyra77610;rank=1 scaffold_25 . exon 427217 427497 . - . ID=Phyra77610.1;Parent=Phyra77610;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . biological_region 432261 432262 0.999 - . logic_name=eponine scaffold_25 . biological_region 436910 436911 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 427808 431362 . + . ID=Phyra71538;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_25000014;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 427808 431362 . + . ID=Phyra71538;Parent=Phyra71538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 427808 431362 . + 0 ID=Phyra71538;Parent=Phyra71538;rank=1 scaffold_25 . exon 427808 431362 . + . ID=Phyra71538.1;Parent=Phyra71538;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 431536 432613 . - . ID=Phyra77612;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000133;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 431536 432613 . - . ID=Phyra77612;Parent=Phyra77612;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 431536 432483 . - 0 ID=Phyra77612;Parent=Phyra77612;rank=2 scaffold_25 . exon 431536 432483 . - . ID=Phyra77612.2;Parent=Phyra77612;constitutive=1;rank=2 scaffold_25 . CDS 432548 432613 . - 0 ID=Phyra77612;Parent=Phyra77612;rank=1 scaffold_25 . exon 432548 432613 . - . ID=Phyra77612.1;Parent=Phyra77612;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 433577 434110 . + . ID=Phyra77613;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000134;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 433577 434110 . + . ID=Phyra77613;Parent=Phyra77613;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 433577 434110 . + 0 ID=Phyra77613;Parent=Phyra77613;rank=1 scaffold_25 . exon 433577 434110 . + . ID=Phyra77613.1;Parent=Phyra77613;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 435714 436046 . - . ID=Phyra77614;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000135;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 435714 436046 . - . ID=Phyra77614;Parent=Phyra77614;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 435714 436046 . - 0 ID=Phyra77614;Parent=Phyra77614;rank=1 scaffold_25 . exon 435714 436046 . - . ID=Phyra77614.1;Parent=Phyra77614;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 437246 437578 . + . ID=Phyra77615;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000136;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 437246 437578 . + . ID=Phyra77615;Parent=Phyra77615;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 437246 437578 . + 0 ID=Phyra77615;Parent=Phyra77615;rank=1 scaffold_25 . exon 437246 437578 . + . ID=Phyra77615.1;Parent=Phyra77615;constitutive=1;rank=1 scaffold_25 . repeat_region 439109 439118 . ? . description=dust scaffold_25 ensembl protein_coding_gene 439940 440935 . + . ID=Phyra77617;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000138;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 439940 440935 . + . ID=Phyra77617;Parent=Phyra77617;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 439940 440935 . + 0 ID=Phyra77617;Parent=Phyra77617;rank=1 scaffold_25 . exon 439940 440935 . + . ID=Phyra77617.1;Parent=Phyra77617;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 440989 441864 . - . ID=Phyra77618;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000139;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 440989 441864 . - . ID=Phyra77618;Parent=Phyra77618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 440989 441864 . - 0 ID=Phyra77618;Parent=Phyra77618;rank=1 scaffold_25 . exon 440989 441864 . - . ID=Phyra77618.1;Parent=Phyra77618;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 442116 444110 . - . ID=Phyra77619;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000140;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 442116 444110 . - . ID=Phyra77619;Parent=Phyra77619;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 442116 444110 . - 0 ID=Phyra77619;Parent=Phyra77619;rank=1 scaffold_25 . exon 442116 444110 . - . ID=Phyra77619.1;Parent=Phyra77619;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 445187 446995 . - . ID=Phyra77620;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000141;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 445187 446995 . - . ID=Phyra77620;Parent=Phyra77620;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 445187 446995 . - 0 ID=Phyra77620;Parent=Phyra77620;rank=1 scaffold_25 . exon 445187 446995 . - . ID=Phyra77620.1;Parent=Phyra77620;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 437839 438543 . - . ID=Phyra94856;biotype=protein_coding;external_name=C_scaffold_25000041;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 437839 438543 . - . ID=Phyra94856;Parent=Phyra94856;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 437839 438012 . - 0 ID=Phyra94856;Parent=Phyra94856;rank=2 scaffold_25 . exon 437839 438012 . - . ID=Phyra94856.2;Parent=Phyra94856;constitutive=1;rank=2 scaffold_25 . CDS 438088 438543 . - 0 ID=Phyra94856;Parent=Phyra94856;rank=1 scaffold_25 . exon 438088 438543 . - . ID=Phyra94856.1;Parent=Phyra94856;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 438791 439692 . + . ID=Phyra94857;biotype=protein_coding;external_name=C_scaffold_25000042;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 438791 439692 . + . ID=Phyra94857;Parent=Phyra94857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 438791 438924 . + 0 ID=Phyra94857;Parent=Phyra94857;rank=1 scaffold_25 . exon 438791 438924 . + . ID=Phyra94857.1;Parent=Phyra94857;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 439011 439071 . + 0 ID=Phyra94857;Parent=Phyra94857;rank=2 scaffold_25 . exon 439011 439071 . + . ID=Phyra94857.2;Parent=Phyra94857;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 439165 439692 . + 0 ID=Phyra94857;Parent=Phyra94857;rank=3 scaffold_25 . exon 439165 439692 . + . ID=Phyra94857.3;Parent=Phyra94857;constitutive=1;rank=3 scaffold_25 . biological_region 449506 449508 0.999 - . logic_name=eponine scaffold_25 ensembl protein_coding_gene 447903 449820 . - . ID=Phyra77621;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000142;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 447903 449820 . - . ID=Phyra77621;Parent=Phyra77621;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 447903 448100 . - 0 ID=Phyra77621;Parent=Phyra77621;rank=2 scaffold_25 . exon 447903 448100 . - . ID=Phyra77621.2;Parent=Phyra77621;constitutive=1;rank=2 scaffold_25 . CDS 448198 449820 . - 0 ID=Phyra77621;Parent=Phyra77621;rank=1 scaffold_25 . exon 448198 449820 . - . ID=Phyra77621.1;Parent=Phyra77621;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 450229 451197 . + . ID=Phyra77622;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000143;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 450229 451197 . + . ID=Phyra77622;Parent=Phyra77622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 450229 450719 . + 0 ID=Phyra77622;Parent=Phyra77622;rank=1 scaffold_25 . exon 450229 450719 . + . ID=Phyra77622.1;Parent=Phyra77622;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 450789 451197 . + 0 ID=Phyra77622;Parent=Phyra77622;rank=2 scaffold_25 . exon 450789 451197 . + . ID=Phyra77622.2;Parent=Phyra77622;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 ensembl protein_coding_gene 461997 462825 . - . ID=Phyra45617;biotype=protein_coding;external_name=gwEuk.25.86.1;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 461997 462825 . - . ID=Phyra45617;Parent=Phyra45617;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 461997 462195 . - 0 ID=Phyra45617;Parent=Phyra45617;rank=5 scaffold_25 . exon 461997 462195 . - . ID=Phyra45617.5;Parent=Phyra45617;constitutive=1;ensembl_phase=2;rank=5 scaffold_25 . CDS 462263 462393 . - 0 ID=Phyra45617;Parent=Phyra45617;rank=4 scaffold_25 . exon 462263 462393 . - . ID=Phyra45617.4;Parent=Phyra45617;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_25 . CDS 462462 462583 . - 0 ID=Phyra45617;Parent=Phyra45617;rank=3 scaffold_25 . exon 462462 462583 . - . ID=Phyra45617.3;Parent=Phyra45617;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 462649 462681 . - 0 ID=Phyra45617;Parent=Phyra45617;rank=2 scaffold_25 . exon 462649 462681 . - . ID=Phyra45617.2;Parent=Phyra45617;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 462756 462825 . - 0 ID=Phyra45617;Parent=Phyra45617;rank=1 scaffold_25 . exon 462756 462825 . - . ID=Phyra45617.1;Parent=Phyra45617;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 466601 467791 . - . ID=Phyra71539;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_25000015;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 466601 467791 . - . ID=Phyra71539;Parent=Phyra71539;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 466601 467791 . - 0 ID=Phyra71539;Parent=Phyra71539;rank=1 scaffold_25 . exon 466601 467791 . - . ID=Phyra71539.1;Parent=Phyra71539;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 458206 459093 . + . ID=Phyra77623;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000144;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 458206 459093 . + . ID=Phyra77623;Parent=Phyra77623;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 458206 459093 . + 0 ID=Phyra77623;Parent=Phyra77623;rank=1 scaffold_25 . exon 458206 459093 . + . ID=Phyra77623.1;Parent=Phyra77623;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 459229 461132 . + . ID=Phyra77624;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000145;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 459229 461132 . + . ID=Phyra77624;Parent=Phyra77624;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 459229 459606 . + 0 ID=Phyra77624;Parent=Phyra77624;rank=1 scaffold_25 . exon 459229 459606 . + . ID=Phyra77624.1;Parent=Phyra77624;constitutive=1;rank=1 scaffold_25 . CDS 459650 460355 . + 0 ID=Phyra77624;Parent=Phyra77624;rank=2 scaffold_25 . exon 459650 460355 . + . ID=Phyra77624.2;Parent=Phyra77624;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 460419 460936 . + 0 ID=Phyra77624;Parent=Phyra77624;rank=3 scaffold_25 . exon 460419 460936 . + . ID=Phyra77624.3;Parent=Phyra77624;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 460989 461132 . + 0 ID=Phyra77624;Parent=Phyra77624;rank=4 scaffold_25 . exon 460989 461132 . + . ID=Phyra77624.4;Parent=Phyra77624;constitutive=1;rank=4 scaffold_25 . repeat_region 473982 473989 . ? . description=dust scaffold_25 ensembl protein_coding_gene 472842 473855 . - . ID=Phyra77627;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000148;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 472842 473855 . - . ID=Phyra77627;Parent=Phyra77627;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 472842 473450 . - 0 ID=Phyra77627;Parent=Phyra77627;rank=3 scaffold_25 . exon 472842 473450 . - . ID=Phyra77627.3;Parent=Phyra77627;constitutive=1;rank=3 scaffold_25 . CDS 473532 473781 . - 0 ID=Phyra77627;Parent=Phyra77627;rank=2 scaffold_25 . exon 473532 473781 . - . ID=Phyra77627.2;Parent=Phyra77627;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 473803 473855 . - 0 ID=Phyra77627;Parent=Phyra77627;rank=1 scaffold_25 . exon 473803 473855 . - . ID=Phyra77627.1;Parent=Phyra77627;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 473989 475457 . + . ID=Phyra77628;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000149;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 473989 475457 . + . ID=Phyra77628;Parent=Phyra77628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 473989 474169 . + 0 ID=Phyra77628;Parent=Phyra77628;rank=1 scaffold_25 . exon 473989 474169 . + . ID=Phyra77628.1;Parent=Phyra77628;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 474237 474728 . + 0 ID=Phyra77628;Parent=Phyra77628;rank=2 scaffold_25 . exon 474237 474728 . + . ID=Phyra77628.2;Parent=Phyra77628;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 474806 475015 . + 0 ID=Phyra77628;Parent=Phyra77628;rank=3 scaffold_25 . exon 474806 475015 . + . ID=Phyra77628.3;Parent=Phyra77628;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 475255 475457 . + 0 ID=Phyra77628;Parent=Phyra77628;rank=4 scaffold_25 . exon 475255 475457 . + . ID=Phyra77628.4;Parent=Phyra77628;constitutive=1;ensembl_phase=1;rank=4 scaffold_25 . biological_region 477668 477670 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 486134 487330 . - . ID=Phyra71540;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_25000016;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 486134 487330 . - . ID=Phyra71540;Parent=Phyra71540;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 486134 487330 . - 0 ID=Phyra71540;Parent=Phyra71540;rank=1 scaffold_25 . exon 486134 487330 . - . ID=Phyra71540.1;Parent=Phyra71540;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 477576 480288 . + . ID=Phyra77629;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000150;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 477576 480288 . + . ID=Phyra77629;Parent=Phyra77629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 477576 478605 . + 0 ID=Phyra77629;Parent=Phyra77629;rank=1 scaffold_25 . exon 477576 478605 . + . ID=Phyra77629.1;Parent=Phyra77629;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 478712 480288 . + 0 ID=Phyra77629;Parent=Phyra77629;rank=2 scaffold_25 . exon 478712 480288 . + . ID=Phyra77629.2;Parent=Phyra77629;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . repeat_region 487620 487646 . ? . description=trf scaffold_25 . repeat_region 490402 490445 . ? . description=trf scaffold_25 . repeat_region 491415 491434 . ? . description=trf scaffold_25 ensembl protein_coding_gene 492579 493112 . + . ID=Phyra71541;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_25000017;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 492579 493112 . + . ID=Phyra71541;Parent=Phyra71541;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 492579 493112 . + 0 ID=Phyra71541;Parent=Phyra71541;rank=1 scaffold_25 . exon 492579 493112 . + . ID=Phyra71541.1;Parent=Phyra71541;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 488206 491046 . + . ID=Phyra77631;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000152;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 488206 491046 . + . ID=Phyra77631;Parent=Phyra77631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 488206 491046 . + 0 ID=Phyra77631;Parent=Phyra77631;rank=1 scaffold_25 . exon 488206 491046 . + . ID=Phyra77631.1;Parent=Phyra77631;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 491425 492444 . - . ID=Phyra77632;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000153;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 491425 492444 . - . ID=Phyra77632;Parent=Phyra77632;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 491425 491493 . - 0 ID=Phyra77632;Parent=Phyra77632;rank=3 scaffold_25 . exon 491425 491493 . - . ID=Phyra77632.3;Parent=Phyra77632;constitutive=1;rank=3 scaffold_25 . CDS 491569 492092 . - 0 ID=Phyra77632;Parent=Phyra77632;rank=2 scaffold_25 . exon 491569 492092 . - . ID=Phyra77632.2;Parent=Phyra77632;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 492159 492444 . - 0 ID=Phyra77632;Parent=Phyra77632;rank=1 scaffold_25 . exon 492159 492444 . - . ID=Phyra77632.1;Parent=Phyra77632;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 495686 496965 . - . ID=Phyra77634;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000155;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 495686 496965 . - . ID=Phyra77634;Parent=Phyra77634;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 495686 495781 . - 0 ID=Phyra77634;Parent=Phyra77634;rank=2 scaffold_25 . exon 495686 495781 . - . ID=Phyra77634.2;Parent=Phyra77634;constitutive=1;rank=2 scaffold_25 . CDS 495862 496965 . - 0 ID=Phyra77634;Parent=Phyra77634;rank=1 scaffold_25 . exon 495862 496965 . - . ID=Phyra77634.1;Parent=Phyra77634;constitutive=1;rank=1 scaffold_25 . repeat_region 500700 500724 . ? . description=dust scaffold_25 ensembl protein_coding_gene 499204 499581 . + . ID=Phyra71542;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_25000018;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 499204 499581 . + . ID=Phyra71542;Parent=Phyra71542;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 499204 499581 . + 0 ID=Phyra71542;Parent=Phyra71542;rank=1 scaffold_25 . exon 499204 499581 . + . ID=Phyra71542.1;Parent=Phyra71542;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 497892 498701 . + . ID=Phyra77635;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000156;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 497892 498701 . + . ID=Phyra77635;Parent=Phyra77635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 497892 498427 . + 0 ID=Phyra77635;Parent=Phyra77635;rank=1 scaffold_25 . exon 497892 498427 . + . ID=Phyra77635.1;Parent=Phyra77635;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 498503 498701 . + 0 ID=Phyra77635;Parent=Phyra77635;rank=2 scaffold_25 . exon 498503 498701 . + . ID=Phyra77635.2;Parent=Phyra77635;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 ensembl protein_coding_gene 499763 501120 . - . ID=Phyra77637;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000158;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 499763 501120 . - . ID=Phyra77637;Parent=Phyra77637;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 499763 499823 . - 0 ID=Phyra77637;Parent=Phyra77637;rank=8 scaffold_25 . exon 499763 499823 . - . ID=Phyra77637.8;Parent=Phyra77637;constitutive=1;ensembl_phase=2;rank=8 scaffold_25 . CDS 499893 500011 . - 0 ID=Phyra77637;Parent=Phyra77637;rank=7 scaffold_25 . exon 499893 500011 . - . ID=Phyra77637.7;Parent=Phyra77637;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_25 . CDS 500090 500176 . - 0 ID=Phyra77637;Parent=Phyra77637;rank=6 scaffold_25 . exon 500090 500176 . - . ID=Phyra77637.6;Parent=Phyra77637;constitutive=1;rank=6 scaffold_25 . CDS 500247 500288 . - 0 ID=Phyra77637;Parent=Phyra77637;rank=5 scaffold_25 . exon 500247 500288 . - . ID=Phyra77637.5;Parent=Phyra77637;constitutive=1;rank=5 scaffold_25 . CDS 500363 500568 . - 0 ID=Phyra77637;Parent=Phyra77637;rank=4 scaffold_25 . exon 500363 500568 . - . ID=Phyra77637.4;Parent=Phyra77637;constitutive=1;ensembl_phase=1;rank=4 scaffold_25 . CDS 500644 500766 . - 0 ID=Phyra77637;Parent=Phyra77637;rank=3 scaffold_25 . exon 500644 500766 . - . ID=Phyra77637.3;Parent=Phyra77637;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 500876 500980 . - 0 ID=Phyra77637;Parent=Phyra77637;rank=2 scaffold_25 . exon 500876 500980 . - . ID=Phyra77637.2;Parent=Phyra77637;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 501060 501120 . - 0 ID=Phyra77637;Parent=Phyra77637;rank=1 scaffold_25 . exon 501060 501120 . - . ID=Phyra77637.1;Parent=Phyra77637;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 501276 502936 . + . ID=Phyra77638;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000159;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 501276 502936 . + . ID=Phyra77638;Parent=Phyra77638;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 501276 501364 . + 0 ID=Phyra77638;Parent=Phyra77638;rank=1 scaffold_25 . exon 501276 501364 . + . ID=Phyra77638.1;Parent=Phyra77638;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 501429 501510 . + 0 ID=Phyra77638;Parent=Phyra77638;rank=2 scaffold_25 . exon 501429 501510 . + . ID=Phyra77638.2;Parent=Phyra77638;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 501542 501683 . + 0 ID=Phyra77638;Parent=Phyra77638;rank=3 scaffold_25 . exon 501542 501683 . + . ID=Phyra77638.3;Parent=Phyra77638;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_25 . CDS 501754 501889 . + 0 ID=Phyra77638;Parent=Phyra77638;rank=4 scaffold_25 . exon 501754 501889 . + . ID=Phyra77638.4;Parent=Phyra77638;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_25 . CDS 501921 502004 . + 0 ID=Phyra77638;Parent=Phyra77638;rank=5 scaffold_25 . exon 501921 502004 . + . ID=Phyra77638.5;Parent=Phyra77638;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_25 . CDS 502090 502936 . + 0 ID=Phyra77638;Parent=Phyra77638;rank=6 scaffold_25 . exon 502090 502936 . + . ID=Phyra77638.6;Parent=Phyra77638;constitutive=1;ensembl_phase=2;rank=6 scaffold_25 ensembl protein_coding_gene 503342 504218 . - . ID=Phyra77639;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000160;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 503342 504218 . - . ID=Phyra77639;Parent=Phyra77639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 503342 503773 . - 0 ID=Phyra77639;Parent=Phyra77639;rank=4 scaffold_25 . exon 503342 503773 . - . ID=Phyra77639.4;Parent=Phyra77639;constitutive=1;rank=4 scaffold_25 . CDS 503847 503912 . - 0 ID=Phyra77639;Parent=Phyra77639;rank=3 scaffold_25 . exon 503847 503912 . - . ID=Phyra77639.3;Parent=Phyra77639;constitutive=1;rank=3 scaffold_25 . CDS 503986 504041 . - 0 ID=Phyra77639;Parent=Phyra77639;rank=2 scaffold_25 . exon 503986 504041 . - . ID=Phyra77639.2;Parent=Phyra77639;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 504107 504218 . - 0 ID=Phyra77639;Parent=Phyra77639;rank=1 scaffold_25 . exon 504107 504218 . - . ID=Phyra77639.1;Parent=Phyra77639;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 505015 506823 . + . ID=Phyra77640;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000161;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 505015 506823 . + . ID=Phyra77640;Parent=Phyra77640;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 505015 506823 . + 0 ID=Phyra77640;Parent=Phyra77640;rank=1 scaffold_25 . exon 505015 506823 . + . ID=Phyra77640.1;Parent=Phyra77640;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 509396 511720 . + . ID=Phyra94868;biotype=protein_coding;external_name=C_scaffold_25000053;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 509396 511720 . + . ID=Phyra94868;Parent=Phyra94868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 509396 509817 . + 0 ID=Phyra94868;Parent=Phyra94868;rank=1 scaffold_25 . exon 509396 509817 . + . ID=Phyra94868.1;Parent=Phyra94868;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 509891 510030 . + 0 ID=Phyra94868;Parent=Phyra94868;rank=2 scaffold_25 . exon 509891 510030 . + . ID=Phyra94868.2;Parent=Phyra94868;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 510091 510194 . + 0 ID=Phyra94868;Parent=Phyra94868;rank=3 scaffold_25 . exon 510091 510194 . + . ID=Phyra94868.3;Parent=Phyra94868;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 510267 510379 . + 0 ID=Phyra94868;Parent=Phyra94868;rank=4 scaffold_25 . exon 510267 510379 . + . ID=Phyra94868.4;Parent=Phyra94868;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_25 . CDS 510442 510442 . + 0 ID=Phyra94868;Parent=Phyra94868;rank=5 scaffold_25 . exon 510442 510442 . + . ID=Phyra94868.5;Parent=Phyra94868;constitutive=1;ensembl_phase=2;rank=5 scaffold_25 . CDS 510695 510859 . + 0 ID=Phyra94868;Parent=Phyra94868;rank=6 scaffold_25 . exon 510695 510859 . + . ID=Phyra94868.6;Parent=Phyra94868;constitutive=1;rank=6 scaffold_25 . CDS 510932 511195 . + 0 ID=Phyra94868;Parent=Phyra94868;rank=7 scaffold_25 . exon 510932 511195 . + . ID=Phyra94868.7;Parent=Phyra94868;constitutive=1;rank=7 scaffold_25 . CDS 511384 511695 . + 0 ID=Phyra94868;Parent=Phyra94868;rank=8 scaffold_25 . exon 511384 511695 . + . ID=Phyra94868.8;Parent=Phyra94868;constitutive=1;rank=8 scaffold_25 . CDS 511718 511720 . + 0 ID=Phyra94868;Parent=Phyra94868;rank=9 scaffold_25 . exon 511718 511720 . + . ID=Phyra94868.9;Parent=Phyra94868;constitutive=1;rank=9 scaffold_25 . biological_region 519246 519249 0.999 - . logic_name=eponine scaffold_25 . biological_region 519281 519287 0.999 + . logic_name=eponine scaffold_25 . biological_region 519301 519304 0.999 + . logic_name=eponine scaffold_25 . repeat_region 520617 520654 . ? . description=trf scaffold_25 . repeat_region 522338 522353 . ? . description=dust scaffold_25 . repeat_region 523804 523813 . ? . description=dust scaffold_25 ensembl protein_coding_gene 517838 519469 . - . ID=Phyra77642;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000163;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 517838 519469 . - . ID=Phyra77642;Parent=Phyra77642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 517838 519469 . - 0 ID=Phyra77642;Parent=Phyra77642;rank=1 scaffold_25 . exon 517838 519469 . - . ID=Phyra77642.1;Parent=Phyra77642;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 523854 524285 . - . ID=Phyra77643;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000164;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 523854 524285 . - . ID=Phyra77643;Parent=Phyra77643;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 523854 524285 . - 0 ID=Phyra77643;Parent=Phyra77643;rank=1 scaffold_25 . exon 523854 524285 . - . ID=Phyra77643.1;Parent=Phyra77643;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 533127 534399 . + . ID=Phyra45645;biotype=protein_coding;external_name=gwEuk.25.114.1;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 533127 534399 . + . ID=Phyra45645;Parent=Phyra45645;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 533127 533190 . + 0 ID=Phyra45645;Parent=Phyra45645;rank=1 scaffold_25 . exon 533127 533190 . + . ID=Phyra45645.1;Parent=Phyra45645;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 533264 533437 . + 0 ID=Phyra45645;Parent=Phyra45645;rank=2 scaffold_25 . exon 533264 533437 . + . ID=Phyra45645.2;Parent=Phyra45645;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 533522 534399 . + 0 ID=Phyra45645;Parent=Phyra45645;rank=3 scaffold_25 . exon 533522 534399 . + . ID=Phyra45645.3;Parent=Phyra45645;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 ensembl protein_coding_gene 526748 529149 . + . ID=Phyra77644;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000165;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 526748 529149 . + . ID=Phyra77644;Parent=Phyra77644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 526748 526773 . + 0 ID=Phyra77644;Parent=Phyra77644;rank=1 scaffold_25 . exon 526748 526773 . + . ID=Phyra77644.1;Parent=Phyra77644;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 526848 527358 . + 0 ID=Phyra77644;Parent=Phyra77644;rank=2 scaffold_25 . exon 526848 527358 . + . ID=Phyra77644.2;Parent=Phyra77644;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 527443 529149 . + 0 ID=Phyra77644;Parent=Phyra77644;rank=3 scaffold_25 . exon 527443 529149 . + . ID=Phyra77644.3;Parent=Phyra77644;constitutive=1;rank=3 scaffold_25 ensembl protein_coding_gene 530852 531702 . - . ID=Phyra77645;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000166;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 530852 531702 . - . ID=Phyra77645;Parent=Phyra77645;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 530852 531543 . - 0 ID=Phyra77645;Parent=Phyra77645;rank=2 scaffold_25 . exon 530852 531543 . - . ID=Phyra77645.2;Parent=Phyra77645;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 531591 531702 . - 0 ID=Phyra77645;Parent=Phyra77645;rank=1 scaffold_25 . exon 531591 531702 . - . ID=Phyra77645.1;Parent=Phyra77645;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 534946 536700 . + . ID=Phyra77647;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000168;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 534946 536700 . + . ID=Phyra77647;Parent=Phyra77647;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 534946 535307 . + 0 ID=Phyra77647;Parent=Phyra77647;rank=1 scaffold_25 . exon 534946 535307 . + . ID=Phyra77647.1;Parent=Phyra77647;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 535380 535871 . + 0 ID=Phyra77647;Parent=Phyra77647;rank=2 scaffold_25 . exon 535380 535871 . + . ID=Phyra77647.2;Parent=Phyra77647;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_25 . CDS 535936 536049 . + 0 ID=Phyra77647;Parent=Phyra77647;rank=3 scaffold_25 . exon 535936 536049 . + . ID=Phyra77647.3;Parent=Phyra77647;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_25 . CDS 536118 536700 . + 0 ID=Phyra77647;Parent=Phyra77647;rank=4 scaffold_25 . exon 536118 536700 . + . ID=Phyra77647.4;Parent=Phyra77647;constitutive=1;ensembl_phase=2;rank=4 scaffold_25 . biological_region 539461 539463 0.999 - . logic_name=eponine scaffold_25 . biological_region 539940 539942 0.999 - . logic_name=eponine scaffold_25 . biological_region 539982 539982 0.999 + . logic_name=eponine scaffold_25 . biological_region 540004 540009 0.999 - . logic_name=eponine scaffold_25 . biological_region 540034 540037 0.999 + . logic_name=eponine scaffold_25 . biological_region 540135 540136 0.999 - . logic_name=eponine scaffold_25 . biological_region 540223 540224 0.999 + . logic_name=eponine scaffold_25 . repeat_region 544000 544007 . ? . description=dust scaffold_25 ensembl protein_coding_gene 540331 541404 . + . ID=Phyra71543;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_25000019;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 540331 541404 . + . ID=Phyra71543;Parent=Phyra71543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 540331 540468 . + 0 ID=Phyra71543;Parent=Phyra71543;rank=1 scaffold_25 . exon 540331 540468 . + . ID=Phyra71543.1;Parent=Phyra71543;constitutive=1;rank=1 scaffold_25 . CDS 540538 541404 . + 0 ID=Phyra71543;Parent=Phyra71543;rank=2 scaffold_25 . exon 540538 541404 . + . ID=Phyra71543.2;Parent=Phyra71543;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 537693 539366 . - . ID=Phyra77648;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000169;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 537693 539366 . - . ID=Phyra77648;Parent=Phyra77648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 537693 539366 . - 0 ID=Phyra77648;Parent=Phyra77648;rank=1 scaffold_25 . exon 537693 539366 . - . ID=Phyra77648.1;Parent=Phyra77648;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 541838 542629 . - . ID=Phyra77650;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000171;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 541838 542629 . - . ID=Phyra77650;Parent=Phyra77650;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 541838 542629 . - 0 ID=Phyra77650;Parent=Phyra77650;rank=1 scaffold_25 . exon 541838 542629 . - . ID=Phyra77650.1;Parent=Phyra77650;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 543477 545144 . + . ID=Phyra77651;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000172;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 543477 545144 . + . ID=Phyra77651;Parent=Phyra77651;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 543477 543950 . + 0 ID=Phyra77651;Parent=Phyra77651;rank=1 scaffold_25 . exon 543477 543950 . + . ID=Phyra77651.1;Parent=Phyra77651;constitutive=1;rank=1 scaffold_25 . CDS 544016 544052 . + 0 ID=Phyra77651;Parent=Phyra77651;rank=2 scaffold_25 . exon 544016 544052 . + . ID=Phyra77651.2;Parent=Phyra77651;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 544123 544214 . + 0 ID=Phyra77651;Parent=Phyra77651;rank=3 scaffold_25 . exon 544123 544214 . + . ID=Phyra77651.3;Parent=Phyra77651;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 544285 544530 . + 0 ID=Phyra77651;Parent=Phyra77651;rank=4 scaffold_25 . exon 544285 544530 . + . ID=Phyra77651.4;Parent=Phyra77651;constitutive=1;rank=4 scaffold_25 . CDS 544602 544704 . + 0 ID=Phyra77651;Parent=Phyra77651;rank=5 scaffold_25 . exon 544602 544704 . + . ID=Phyra77651.5;Parent=Phyra77651;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_25 . CDS 544781 544878 . + 0 ID=Phyra77651;Parent=Phyra77651;rank=6 scaffold_25 . exon 544781 544878 . + . ID=Phyra77651.6;Parent=Phyra77651;constitutive=1;ensembl_phase=1;rank=6 scaffold_25 . CDS 544956 545144 . + 0 ID=Phyra77651;Parent=Phyra77651;rank=7 scaffold_25 . exon 544956 545144 . + . ID=Phyra77651.7;Parent=Phyra77651;constitutive=1;rank=7 scaffold_25 ensembl protein_coding_gene 545272 546666 . - . ID=Phyra77652;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000173;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 545272 546666 . - . ID=Phyra77652;Parent=Phyra77652;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 545272 546666 . - 0 ID=Phyra77652;Parent=Phyra77652;rank=1 scaffold_25 . exon 545272 546666 . - . ID=Phyra77652.1;Parent=Phyra77652;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 547680 548401 . + . ID=Phyra77653;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000174;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 547680 548401 . + . ID=Phyra77653;Parent=Phyra77653;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 547680 548018 . + 0 ID=Phyra77653;Parent=Phyra77653;rank=1 scaffold_25 . exon 547680 548018 . + . ID=Phyra77653.1;Parent=Phyra77653;constitutive=1;rank=1 scaffold_25 . CDS 548056 548064 . + 0 ID=Phyra77653;Parent=Phyra77653;rank=2 scaffold_25 . exon 548056 548064 . + . ID=Phyra77653.2;Parent=Phyra77653;constitutive=1;rank=2 scaffold_25 . CDS 548092 548320 . + 0 ID=Phyra77653;Parent=Phyra77653;rank=3 scaffold_25 . exon 548092 548320 . + . ID=Phyra77653.3;Parent=Phyra77653;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_25 . CDS 548346 548401 . + 0 ID=Phyra77653;Parent=Phyra77653;rank=4 scaffold_25 . exon 548346 548401 . + . ID=Phyra77653.4;Parent=Phyra77653;constitutive=1;ensembl_phase=1;rank=4 scaffold_25 ensembl protein_coding_gene 549350 550177 . - . ID=Phyra77654;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000175;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 549350 550177 . - . ID=Phyra77654;Parent=Phyra77654;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 549350 550177 . - 0 ID=Phyra77654;Parent=Phyra77654;rank=1 scaffold_25 . exon 549350 550177 . - . ID=Phyra77654.1;Parent=Phyra77654;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 550511 552746 . + . ID=Phyra77655;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000176;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 550511 552746 . + . ID=Phyra77655;Parent=Phyra77655;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 550511 550772 . + 0 ID=Phyra77655;Parent=Phyra77655;rank=1 scaffold_25 . exon 550511 550772 . + . ID=Phyra77655.1;Parent=Phyra77655;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 550868 551839 . + 0 ID=Phyra77655;Parent=Phyra77655;rank=2 scaffold_25 . exon 550868 551839 . + . ID=Phyra77655.2;Parent=Phyra77655;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 551911 552094 . + 0 ID=Phyra77655;Parent=Phyra77655;rank=3 scaffold_25 . exon 551911 552094 . + . ID=Phyra77655.3;Parent=Phyra77655;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_25 . CDS 552176 552453 . + 0 ID=Phyra77655;Parent=Phyra77655;rank=4 scaffold_25 . exon 552176 552453 . + . ID=Phyra77655.4;Parent=Phyra77655;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_25 . CDS 552529 552746 . + 0 ID=Phyra77655;Parent=Phyra77655;rank=5 scaffold_25 . exon 552529 552746 . + . ID=Phyra77655.5;Parent=Phyra77655;constitutive=1;ensembl_phase=1;rank=5 scaffold_25 ensembl protein_coding_gene 552909 553801 . + . ID=Phyra77656;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000177;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 552909 553801 . + . ID=Phyra77656;Parent=Phyra77656;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 552909 553052 . + 0 ID=Phyra77656;Parent=Phyra77656;rank=1 scaffold_25 . exon 552909 553052 . + . ID=Phyra77656.1;Parent=Phyra77656;constitutive=1;rank=1 scaffold_25 . CDS 553118 553228 . + 0 ID=Phyra77656;Parent=Phyra77656;rank=2 scaffold_25 . exon 553118 553228 . + . ID=Phyra77656.2;Parent=Phyra77656;constitutive=1;rank=2 scaffold_25 . CDS 553289 553801 . + 0 ID=Phyra77656;Parent=Phyra77656;rank=3 scaffold_25 . exon 553289 553801 . + . ID=Phyra77656.3;Parent=Phyra77656;constitutive=1;rank=3 scaffold_25 ensembl protein_coding_gene 553868 556390 . - . ID=Phyra77657;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_25000178;logic_name=jgi_phyra1 scaffold_25 ensembl transcript 553868 556390 . - . ID=Phyra77657;Parent=Phyra77657;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_25 . CDS 553868 556390 . - 0 ID=Phyra77657;Parent=Phyra77657;rank=1 scaffold_25 . exon 553868 556390 . - . ID=Phyra77657.1;Parent=Phyra77657;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_24 1 565281 scaffold_24 . repeat_region 479 536 . ? . description=trf scaffold_24 . repeat_region 674 681 . ? . description=dust scaffold_24 . repeat_region 719 735 . ? . description=dust scaffold_24 . repeat_region 2819 2845 . ? . description=trf scaffold_24 . repeat_region 2819 2845 . ? . description=dust scaffold_24 . repeat_region 3057 3066 . ? . description=dust scaffold_24 . biological_region 8269 8272 0.999 - . logic_name=eponine scaffold_24 . biological_region 8305 8309 0.999 + . logic_name=eponine scaffold_24 . biological_region 8325 8328 0.999 + . logic_name=eponine scaffold_24 . repeat_region 8832 8839 . ? . description=dust scaffold_24 ensembl tRNA_gene 211 282 . - . ID=EPrPRAG00000000153;biotype=tRNA;description=tRNA-Pro for anticodon CGG [Source:TRNASCAN_SE%3BAcc:tRNA-Pro];external_name=tRNA-Pro;logic_name=ncrna_eg scaffold_24 ensembl transcript 211 282 . - . ID=EPrPRAT00000000153;Parent=EPrPRAG00000000153;biotype=tRNA;logic_name=ncrna_eg scaffold_24 . exon 211 282 . - . ID=EPrPRAE00000000153;Parent=EPrPRAT00000000153;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 3413 3715 . + . ID=Phyra77332;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000001;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 3413 3715 . + . ID=Phyra77332;Parent=Phyra77332;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 3413 3715 . + 0 ID=Phyra77332;Parent=Phyra77332;rank=1 scaffold_24 . exon 3413 3715 . + . ID=Phyra77332.1;Parent=Phyra77332;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 12975 14697 . - . ID=Phyra77334;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000003;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 12975 14697 . - . ID=Phyra77334;Parent=Phyra77334;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 12975 13842 . - 0 ID=Phyra77334;Parent=Phyra77334;rank=3 scaffold_24 . exon 12975 13842 . - . ID=Phyra77334.3;Parent=Phyra77334;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 . CDS 13907 14481 . - 0 ID=Phyra77334;Parent=Phyra77334;rank=2 scaffold_24 . exon 13907 14481 . - . ID=Phyra77334.2;Parent=Phyra77334;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_24 . CDS 14563 14697 . - 0 ID=Phyra77334;Parent=Phyra77334;rank=1 scaffold_24 . exon 14563 14697 . - . ID=Phyra77334.1;Parent=Phyra77334;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 18046 19461 . + . ID=Phyra77335;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000004;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 18046 19461 . + . ID=Phyra77335;Parent=Phyra77335;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 18046 19461 . + 0 ID=Phyra77335;Parent=Phyra77335;rank=1 scaffold_24 . exon 18046 19461 . + . ID=Phyra77335.1;Parent=Phyra77335;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 10645 12877 . + . ID=Phyra94773;biotype=protein_coding;external_name=C_scaffold_24000001;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 10645 12877 . + . ID=Phyra94773;Parent=Phyra94773;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 10645 11327 . + 0 ID=Phyra94773;Parent=Phyra94773;rank=1 scaffold_24 . exon 10645 11327 . + . ID=Phyra94773.1;Parent=Phyra94773;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 11851 12222 . + 0 ID=Phyra94773;Parent=Phyra94773;rank=2 scaffold_24 . exon 11851 12222 . + . ID=Phyra94773.2;Parent=Phyra94773;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_24 . CDS 12262 12877 . + 0 ID=Phyra94773;Parent=Phyra94773;rank=3 scaffold_24 . exon 12262 12877 . + . ID=Phyra94773.3;Parent=Phyra94773;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 . repeat_region 21531 23177 . ? . description=dust scaffold_24 . repeat_region 27351 29071 . ? . description=dust scaffold_24 ensembl protein_coding_gene 29072 30329 . + . ID=Phyra45397;biotype=protein_coding;external_name=gwEuk.24.75.1;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 29072 30329 . + . ID=Phyra45397;Parent=Phyra45397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 29072 29602 . + 0 ID=Phyra45397;Parent=Phyra45397;rank=1 scaffold_24 . exon 29072 29602 . + . ID=Phyra45397.1;Parent=Phyra45397;constitutive=1;rank=1 scaffold_24 . CDS 29679 30329 . + 0 ID=Phyra45397;Parent=Phyra45397;rank=2 scaffold_24 . exon 29679 30329 . + . ID=Phyra45397.2;Parent=Phyra45397;constitutive=1;rank=2 scaffold_24 ensembl protein_coding_gene 20152 21381 . - . ID=Phyra77336;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000005;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 20152 21381 . - . ID=Phyra77336;Parent=Phyra77336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 20152 21381 . - 0 ID=Phyra77336;Parent=Phyra77336;rank=1 scaffold_24 . exon 20152 21381 . - . ID=Phyra77336.1;Parent=Phyra77336;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 24347 25865 . - . ID=Phyra77337;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000006;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 24347 25865 . - . ID=Phyra77337;Parent=Phyra77337;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 24347 24455 . - 0 ID=Phyra77337;Parent=Phyra77337;rank=6 scaffold_24 . exon 24347 24455 . - . ID=Phyra77337.6;Parent=Phyra77337;constitutive=1;ensembl_phase=2;rank=6 scaffold_24 . CDS 24519 24599 . - 0 ID=Phyra77337;Parent=Phyra77337;rank=5 scaffold_24 . exon 24519 24599 . - . ID=Phyra77337.5;Parent=Phyra77337;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_24 . CDS 24681 24829 . - 0 ID=Phyra77337;Parent=Phyra77337;rank=4 scaffold_24 . exon 24681 24829 . - . ID=Phyra77337.4;Parent=Phyra77337;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_24 . CDS 24971 25143 . - 0 ID=Phyra77337;Parent=Phyra77337;rank=3 scaffold_24 . exon 24971 25143 . - . ID=Phyra77337.3;Parent=Phyra77337;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 25216 25397 . - 0 ID=Phyra77337;Parent=Phyra77337;rank=2 scaffold_24 . exon 25216 25397 . - . ID=Phyra77337.2;Parent=Phyra77337;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 25462 25865 . - 0 ID=Phyra77337;Parent=Phyra77337;rank=1 scaffold_24 . exon 25462 25865 . - . ID=Phyra77337.1;Parent=Phyra77337;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . biological_region 30069 30074 0.999 + . logic_name=eponine scaffold_24 ensembl protein_coding_gene 31311 32468 . - . ID=Phyra77339;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000008;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 31311 32468 . - . ID=Phyra77339;Parent=Phyra77339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 31311 32468 . - 0 ID=Phyra77339;Parent=Phyra77339;rank=1 scaffold_24 . exon 31311 32468 . - . ID=Phyra77339.1;Parent=Phyra77339;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 34144 34779 . + . ID=Phyra77340;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000009;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 34144 34779 . + . ID=Phyra77340;Parent=Phyra77340;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 34144 34779 . + 0 ID=Phyra77340;Parent=Phyra77340;rank=1 scaffold_24 . exon 34144 34779 . + . ID=Phyra77340.1;Parent=Phyra77340;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 37174 37809 . + . ID=Phyra77341;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000010;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 37174 37809 . + . ID=Phyra77341;Parent=Phyra77341;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 37174 37809 . + 0 ID=Phyra77341;Parent=Phyra77341;rank=1 scaffold_24 . exon 37174 37809 . + . ID=Phyra77341.1;Parent=Phyra77341;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 37982 41156 . - . ID=Phyra77342;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000011;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 37982 41156 . - . ID=Phyra77342;Parent=Phyra77342;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 37982 40702 . - 0 ID=Phyra77342;Parent=Phyra77342;rank=2 scaffold_24 . exon 37982 40702 . - . ID=Phyra77342.2;Parent=Phyra77342;constitutive=1;rank=2 scaffold_24 . CDS 40782 41156 . - 0 ID=Phyra77342;Parent=Phyra77342;rank=1 scaffold_24 . repeat_region 46727 46736 . ? . description=dust scaffold_24 ensembl protein_coding_gene 41966 44083 . - . ID=Phyra71510;biotype=protein_coding;description=Heat shock protein 90 [Source:UniProtKB/TrEMBL%3BAcc:A7XKJ0];external_name=HSP90;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 41966 44083 . - . ID=Phyra71510;Parent=Phyra71510;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 41966 44083 . - 0 ID=Phyra71510;Parent=Phyra71510;rank=1 scaffold_24 . exon 41966 44083 . - . ID=Phyra71510.1;Parent=Phyra71510;constitutive=1;rank=1 scaffold_24 . exon 40782 41156 . - . ID=Phyra77342.1;Parent=Phyra77342;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 49541 52960 . + . ID=Phyra77344;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000013;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 49541 52960 . + . ID=Phyra77344;Parent=Phyra77344;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 49541 49980 . + 0 ID=Phyra77344;Parent=Phyra77344;rank=1 scaffold_24 . exon 49541 49980 . + . ID=Phyra77344.1;Parent=Phyra77344;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 50049 50247 . + 0 ID=Phyra77344;Parent=Phyra77344;rank=2 scaffold_24 . CDS 50313 50382 . + 0 ID=Phyra77344;Parent=Phyra77344;rank=3 scaffold_24 . CDS 50446 50513 . + 0 ID=Phyra77344;Parent=Phyra77344;rank=4 scaffold_24 . CDS 50586 50673 . + 0 ID=Phyra77344;Parent=Phyra77344;rank=5 scaffold_24 . CDS 50765 51662 . + 0 ID=Phyra77344;Parent=Phyra77344;rank=6 scaffold_24 . CDS 52007 52632 . + 0 ID=Phyra77344;Parent=Phyra77344;rank=7 scaffold_24 . CDS 52929 52960 . + 0 ID=Phyra77344;Parent=Phyra77344;rank=8 scaffold_24 . biological_region 58440 58442 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 57891 58814 . + . ID=Phyra45408;biotype=protein_coding;external_name=gwEuk.24.86.1;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 57891 58814 . + . ID=Phyra45408;Parent=Phyra45408;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 57891 58814 . + 0 ID=Phyra45408;Parent=Phyra45408;rank=1 scaffold_24 . exon 57891 58814 . + . ID=Phyra45408.1;Parent=Phyra45408;constitutive=1;rank=1 scaffold_24 . exon 50049 50247 . + . ID=Phyra77344.2;Parent=Phyra77344;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . exon 50313 50382 . + . ID=Phyra77344.3;Parent=Phyra77344;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_24 . exon 50446 50513 . + . ID=Phyra77344.4;Parent=Phyra77344;constitutive=1;ensembl_phase=1;rank=4 scaffold_24 . exon 50586 50673 . + . ID=Phyra77344.5;Parent=Phyra77344;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_24 . exon 50765 51662 . + . ID=Phyra77344.6;Parent=Phyra77344;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_24 . exon 52007 52632 . + . ID=Phyra77344.7;Parent=Phyra77344;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_24 . exon 52929 52960 . + . ID=Phyra77344.8;Parent=Phyra77344;constitutive=1;ensembl_phase=1;rank=8 scaffold_24 . repeat_region 59893 59902 . ? . description=dust scaffold_24 . repeat_region 60168 60217 . ? . description=dust scaffold_24 . repeat_region 68721 68761 . ? . description=dust scaffold_24 ensembl protein_coding_gene 66338 67756 . + . ID=Phyra71511;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_24000002;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 66338 67756 . + . ID=Phyra71511;Parent=Phyra71511;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 66338 67756 . + 0 ID=Phyra71511;Parent=Phyra71511;rank=1 scaffold_24 . exon 66338 67756 . + . ID=Phyra71511.1;Parent=Phyra71511;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 60222 63895 . + . ID=Phyra77346;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000015;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 60222 63895 . + . ID=Phyra77346;Parent=Phyra77346;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 60222 60524 . + 0 ID=Phyra77346;Parent=Phyra77346;rank=1 scaffold_24 . exon 60222 60524 . + . ID=Phyra77346.1;Parent=Phyra77346;constitutive=1;rank=1 scaffold_24 . CDS 60611 63895 . + 0 ID=Phyra77346;Parent=Phyra77346;rank=2 scaffold_24 . exon 60611 63895 . + . ID=Phyra77346.2;Parent=Phyra77346;constitutive=1;rank=2 scaffold_24 ensembl protein_coding_gene 64079 64525 . - . ID=Phyra77347;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000016;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 64079 64525 . - . ID=Phyra77347;Parent=Phyra77347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 64079 64525 . - 0 ID=Phyra77347;Parent=Phyra77347;rank=1 scaffold_24 . exon 64079 64525 . - . ID=Phyra77347.1;Parent=Phyra77347;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 64793 65888 . + . ID=Phyra77348;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000017;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 64793 65888 . + . ID=Phyra77348;Parent=Phyra77348;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 64793 64989 . + 0 ID=Phyra77348;Parent=Phyra77348;rank=1 scaffold_24 . exon 64793 64989 . + . ID=Phyra77348.1;Parent=Phyra77348;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 65039 65888 . + 0 ID=Phyra77348;Parent=Phyra77348;rank=2 scaffold_24 . exon 65039 65888 . + . ID=Phyra77348.2;Parent=Phyra77348;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 ensembl protein_coding_gene 69180 76028 . + . ID=Phyra77350;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000019;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 69180 76028 . + . ID=Phyra77350;Parent=Phyra77350;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 69180 76028 . + 0 ID=Phyra77350;Parent=Phyra77350;rank=1 scaffold_24 . exon 69180 76028 . + . ID=Phyra77350.1;Parent=Phyra77350;constitutive=1;rank=1 scaffold_24 . biological_region 69876 69877 0.999 + . logic_name=eponine scaffold_24 . biological_region 75793 75795 0.999 + . logic_name=eponine scaffold_24 . biological_region 75825 75829 0.999 + . logic_name=eponine scaffold_24 . biological_region 75842 75848 0.999 - . logic_name=eponine scaffold_24 . biological_region 75883 75889 0.999 - . logic_name=eponine scaffold_24 . biological_region 75930 75933 0.999 - . logic_name=eponine scaffold_24 . biological_region 75939 75939 0.999 + . logic_name=eponine scaffold_24 ensembl protein_coding_gene 76309 79202 . + . ID=Phyra94776;biotype=protein_coding;external_name=C_scaffold_24000004;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 76309 79202 . + . ID=Phyra94776;Parent=Phyra94776;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 76309 78880 . + 0 ID=Phyra94776;Parent=Phyra94776;rank=1 scaffold_24 . exon 76309 78880 . + . ID=Phyra94776.1;Parent=Phyra94776;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 79144 79202 . + 0 ID=Phyra94776;Parent=Phyra94776;rank=2 scaffold_24 . exon 79144 79202 . + . ID=Phyra94776.2;Parent=Phyra94776;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 ensembl protein_coding_gene 88405 91671 . + . ID=Phyra94777;biotype=protein_coding;external_name=C_scaffold_24000005;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 88405 91671 . + . ID=Phyra94777;Parent=Phyra94777;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 88405 88504 . + 0 ID=Phyra94777;Parent=Phyra94777;rank=1 scaffold_24 . exon 88405 88504 . + . ID=Phyra94777.1;Parent=Phyra94777;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 88559 88767 . + 0 ID=Phyra94777;Parent=Phyra94777;rank=2 scaffold_24 . exon 88559 88767 . + . ID=Phyra94777.2;Parent=Phyra94777;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 88951 89133 . + 0 ID=Phyra94777;Parent=Phyra94777;rank=3 scaffold_24 . exon 88951 89133 . + . ID=Phyra94777.3;Parent=Phyra94777;constitutive=1;rank=3 scaffold_24 . CDS 89239 89350 . + 0 ID=Phyra94777;Parent=Phyra94777;rank=4 scaffold_24 . exon 89239 89350 . + . ID=Phyra94777.4;Parent=Phyra94777;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_24 . CDS 89633 89758 . + 0 ID=Phyra94777;Parent=Phyra94777;rank=5 scaffold_24 . CDS 89960 90082 . + 0 ID=Phyra94777;Parent=Phyra94777;rank=6 scaffold_24 . CDS 90236 90427 . + 0 ID=Phyra94777;Parent=Phyra94777;rank=7 scaffold_24 . CDS 90473 91671 . + 0 ID=Phyra94777;Parent=Phyra94777;rank=8 scaffold_24 . repeat_region 93764 93813 . ? . description=dust scaffold_24 ensembl protein_coding_gene 91896 93031 . - . ID=Phyra77353;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000022;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 91896 93031 . - . ID=Phyra77353;Parent=Phyra77353;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 91896 92097 . - 0 ID=Phyra77353;Parent=Phyra77353;rank=4 scaffold_24 . exon 91896 92097 . - . ID=Phyra77353.4;Parent=Phyra77353;constitutive=1;ensembl_phase=2;rank=4 scaffold_24 . CDS 92169 92250 . - 0 ID=Phyra77353;Parent=Phyra77353;rank=3 scaffold_24 . exon 92169 92250 . - . ID=Phyra77353.3;Parent=Phyra77353;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_24 . CDS 92324 92515 . - 0 ID=Phyra77353;Parent=Phyra77353;rank=2 scaffold_24 . exon 92324 92515 . - . ID=Phyra77353.2;Parent=Phyra77353;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 92584 93031 . - 0 ID=Phyra77353;Parent=Phyra77353;rank=1 scaffold_24 . exon 92584 93031 . - . ID=Phyra77353.1;Parent=Phyra77353;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 ensembl protein_coding_gene 93181 93516 . + . ID=Phyra77354;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000023;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 93181 93516 . + . ID=Phyra77354;Parent=Phyra77354;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 93181 93516 . + 0 ID=Phyra77354;Parent=Phyra77354;rank=1 scaffold_24 . exon 93181 93516 . + . ID=Phyra77354.1;Parent=Phyra77354;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 98234 98713 . - . ID=Phyra77355;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000024;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 98234 98713 . - . ID=Phyra77355;Parent=Phyra77355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 98234 98713 . - 0 ID=Phyra77355;Parent=Phyra77355;rank=1 scaffold_24 . exon 98234 98713 . - . ID=Phyra77355.1;Parent=Phyra77355;constitutive=1;rank=1 scaffold_24 . exon 89633 89758 . + . ID=Phyra94777.5;Parent=Phyra94777;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_24 . exon 89960 90082 . + . ID=Phyra94777.6;Parent=Phyra94777;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_24 . exon 90236 90427 . + . ID=Phyra94777.7;Parent=Phyra94777;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_24 . exon 90473 91671 . + . ID=Phyra94777.8;Parent=Phyra94777;constitutive=1;ensembl_phase=1;rank=8 scaffold_24 . biological_region 101420 101422 0.999 - . logic_name=eponine scaffold_24 . biological_region 105400 105400 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 100428 100901 . + . ID=Phyra77356;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000025;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 100428 100901 . + . ID=Phyra77356;Parent=Phyra77356;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 100428 100901 . + 0 ID=Phyra77356;Parent=Phyra77356;rank=1 scaffold_24 . exon 100428 100901 . + . ID=Phyra77356.1;Parent=Phyra77356;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 102565 103089 . + . ID=Phyra77357;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000026;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 102565 103089 . + . ID=Phyra77357;Parent=Phyra77357;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 102565 103089 . + 0 ID=Phyra77357;Parent=Phyra77357;rank=1 scaffold_24 . exon 102565 103089 . + . ID=Phyra77357.1;Parent=Phyra77357;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 104276 106460 . + . ID=Phyra77358;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000027;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 104276 106460 . + . ID=Phyra77358;Parent=Phyra77358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 104276 104285 . + 0 ID=Phyra77358;Parent=Phyra77358;rank=1 scaffold_24 . exon 104276 104285 . + . ID=Phyra77358.1;Parent=Phyra77358;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 104453 104865 . + 0 ID=Phyra77358;Parent=Phyra77358;rank=2 scaffold_24 . exon 104453 104865 . + . ID=Phyra77358.2;Parent=Phyra77358;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 104944 105066 . + 0 ID=Phyra77358;Parent=Phyra77358;rank=3 scaffold_24 . exon 104944 105066 . + . ID=Phyra77358.3;Parent=Phyra77358;constitutive=1;rank=3 scaffold_24 . CDS 105144 106460 . + 0 ID=Phyra77358;Parent=Phyra77358;rank=4 scaffold_24 . exon 105144 106460 . + . ID=Phyra77358.4;Parent=Phyra77358;constitutive=1;rank=4 scaffold_24 ensembl protein_coding_gene 107957 109467 . + . ID=Phyra77359;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000028;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 107957 109467 . + . ID=Phyra77359;Parent=Phyra77359;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 107957 108019 . + 0 ID=Phyra77359;Parent=Phyra77359;rank=1 scaffold_24 . exon 107957 108019 . + . ID=Phyra77359.1;Parent=Phyra77359;constitutive=1;rank=1 scaffold_24 . CDS 108107 108376 . + 0 ID=Phyra77359;Parent=Phyra77359;rank=2 scaffold_24 . exon 108107 108376 . + . ID=Phyra77359.2;Parent=Phyra77359;constitutive=1;rank=2 scaffold_24 . CDS 108415 108846 . + 0 ID=Phyra77359;Parent=Phyra77359;rank=3 scaffold_24 . exon 108415 108846 . + . ID=Phyra77359.3;Parent=Phyra77359;constitutive=1;rank=3 scaffold_24 . CDS 108925 108987 . + 0 ID=Phyra77359;Parent=Phyra77359;rank=4 scaffold_24 . exon 108925 108987 . + . ID=Phyra77359.4;Parent=Phyra77359;constitutive=1;rank=4 scaffold_24 . CDS 109217 109276 . + 0 ID=Phyra77359;Parent=Phyra77359;rank=5 scaffold_24 . CDS 109363 109467 . + 0 ID=Phyra77359;Parent=Phyra77359;rank=6 scaffold_24 . repeat_region 113468 113507 . ? . description=trf scaffold_24 . repeat_region 116053 116061 . ? . description=dust scaffold_24 . exon 109217 109276 . + . ID=Phyra77359.5;Parent=Phyra77359;constitutive=1;rank=5 scaffold_24 . exon 109363 109467 . + . ID=Phyra77359.6;Parent=Phyra77359;constitutive=1;rank=6 scaffold_24 ensembl protein_coding_gene 109608 110417 . - . ID=Phyra77360;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000029;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 109608 110417 . - . ID=Phyra77360;Parent=Phyra77360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 109608 110417 . - 0 ID=Phyra77360;Parent=Phyra77360;rank=1 scaffold_24 . exon 109608 110417 . - . ID=Phyra77360.1;Parent=Phyra77360;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 113490 114554 . + . ID=Phyra77361;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000030;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 113490 114554 . + . ID=Phyra77361;Parent=Phyra77361;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 113490 114554 . + 0 ID=Phyra77361;Parent=Phyra77361;rank=1 scaffold_24 . exon 113490 114554 . + . ID=Phyra77361.1;Parent=Phyra77361;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 118810 119853 . - . ID=Phyra77362;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000031;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 118810 119853 . - . ID=Phyra77362;Parent=Phyra77362;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 118810 119054 . - 0 ID=Phyra77362;Parent=Phyra77362;rank=2 scaffold_24 . exon 118810 119054 . - . ID=Phyra77362.2;Parent=Phyra77362;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 119406 119853 . - 0 ID=Phyra77362;Parent=Phyra77362;rank=1 scaffold_24 . biological_region 119845 119848 0.999 - . logic_name=eponine scaffold_24 . biological_region 126975 126975 0.999 + . logic_name=eponine scaffold_24 . exon 119406 119853 . - . ID=Phyra77362.1;Parent=Phyra77362;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 ensembl protein_coding_gene 120574 121098 . - . ID=Phyra77363;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000032;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 120574 121098 . - . ID=Phyra77363;Parent=Phyra77363;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 120574 120753 . - 0 ID=Phyra77363;Parent=Phyra77363;rank=2 scaffold_24 . exon 120574 120753 . - . ID=Phyra77363.2;Parent=Phyra77363;constitutive=1;rank=2 scaffold_24 . CDS 120919 121098 . - 0 ID=Phyra77363;Parent=Phyra77363;rank=1 scaffold_24 . exon 120919 121098 . - . ID=Phyra77363.1;Parent=Phyra77363;constitutive=1;rank=1 scaffold_24 . repeat_region 130733 130741 . ? . description=dust scaffold_24 . repeat_region 130839 130846 . ? . description=dust scaffold_24 . repeat_region 132539 132650 . ? . description=dust scaffold_24 . repeat_region 132547 132600 . ? . description=trf scaffold_24 . repeat_region 133407 133415 . ? . description=dust scaffold_24 . repeat_region 133513 133520 . ? . description=dust scaffold_24 . repeat_region 134488 134496 . ? . description=dust scaffold_24 . repeat_region 135974 136026 . ? . description=dust scaffold_24 . repeat_region 137691 137722 . ? . description=trf scaffold_24 . repeat_region 138473 138480 . ? . description=dust scaffold_24 . biological_region 139505 139507 0.999 + . logic_name=eponine scaffold_24 . biological_region 139636 139640 0.999 + . logic_name=eponine scaffold_24 . biological_region 139647 139651 0.999 - . logic_name=eponine scaffold_24 . biological_region 139954 139957 0.999 + . logic_name=eponine scaffold_24 . biological_region 140032 140035 0.999 + . logic_name=eponine scaffold_24 . biological_region 140040 140045 0.999 - . logic_name=eponine scaffold_24 . biological_region 140074 140076 0.999 - . logic_name=eponine scaffold_24 . biological_region 140095 140103 0.999 + . logic_name=eponine scaffold_24 . biological_region 140128 140128 0.999 + . logic_name=eponine scaffold_24 . biological_region 140143 140147 0.999 - . logic_name=eponine scaffold_24 . biological_region 140197 140202 0.999 - . logic_name=eponine scaffold_24 . biological_region 141239 141241 0.999 + . logic_name=eponine scaffold_24 . biological_region 146045 146046 0.999 - . logic_name=eponine scaffold_24 . biological_region 146653 146656 0.999 + . logic_name=eponine scaffold_24 . biological_region 147075 147078 0.999 + . logic_name=eponine scaffold_24 . biological_region 148285 148287 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 139548 143105 . + . ID=Phyra71512;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_24000003;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 139548 143105 . + . ID=Phyra71512;Parent=Phyra71512;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 139548 139583 . + 0 ID=Phyra71512;Parent=Phyra71512;rank=1 scaffold_24 . exon 139548 139583 . + . ID=Phyra71512.1;Parent=Phyra71512;constitutive=1;rank=1 scaffold_24 . CDS 139611 143105 . + 0 ID=Phyra71512;Parent=Phyra71512;rank=2 scaffold_24 . exon 139611 143105 . + . ID=Phyra71512.2;Parent=Phyra71512;constitutive=1;rank=2 scaffold_24 ensembl protein_coding_gene 143541 146783 . - . ID=Phyra77365;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000034;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 143541 146783 . - . ID=Phyra77365;Parent=Phyra77365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 143541 146783 . - 0 ID=Phyra77365;Parent=Phyra77365;rank=1 scaffold_24 . exon 143541 146783 . - . ID=Phyra77365.1;Parent=Phyra77365;constitutive=1;rank=1 scaffold_24 . repeat_region 149479 149486 . ? . description=dust scaffold_24 . repeat_region 154724 154733 . ? . description=dust scaffold_24 . repeat_region 156293 156300 . ? . description=dust scaffold_24 . repeat_region 157028 157077 . ? . description=dust scaffold_24 ensembl protein_coding_gene 151078 153704 . + . ID=Phyra77366;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000035;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 151078 153704 . + . ID=Phyra77366;Parent=Phyra77366;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 151078 152598 . + 0 ID=Phyra77366;Parent=Phyra77366;rank=1 scaffold_24 . exon 151078 152598 . + . ID=Phyra77366.1;Parent=Phyra77366;constitutive=1;rank=1 scaffold_24 . CDS 152678 152781 . + 0 ID=Phyra77366;Parent=Phyra77366;rank=2 scaffold_24 . exon 152678 152781 . + . ID=Phyra77366.2;Parent=Phyra77366;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_24 . CDS 152853 153084 . + 0 ID=Phyra77366;Parent=Phyra77366;rank=3 scaffold_24 . exon 152853 153084 . + . ID=Phyra77366.3;Parent=Phyra77366;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 . CDS 153191 153433 . + 0 ID=Phyra77366;Parent=Phyra77366;rank=4 scaffold_24 . exon 153191 153433 . + . ID=Phyra77366.4;Parent=Phyra77366;constitutive=1;rank=4 scaffold_24 . CDS 153507 153704 . + 0 ID=Phyra77366;Parent=Phyra77366;rank=5 scaffold_24 . exon 153507 153704 . + . ID=Phyra77366.5;Parent=Phyra77366;constitutive=1;rank=5 scaffold_24 ensembl protein_coding_gene 155495 155857 . + . ID=Phyra77367;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000036;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 155495 155857 . + . ID=Phyra77367;Parent=Phyra77367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 155495 155857 . + 0 ID=Phyra77367;Parent=Phyra77367;rank=1 scaffold_24 . exon 155495 155857 . + . ID=Phyra77367.1;Parent=Phyra77367;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 157213 158037 . - . ID=Phyra77368;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000037;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 157213 158037 . - . ID=Phyra77368;Parent=Phyra77368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 157213 157216 . - 0 ID=Phyra77368;Parent=Phyra77368;rank=3 scaffold_24 . exon 157213 157216 . - . ID=Phyra77368.3;Parent=Phyra77368;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 . CDS 157316 157497 . - 0 ID=Phyra77368;Parent=Phyra77368;rank=2 scaffold_24 . exon 157316 157497 . - . ID=Phyra77368.2;Parent=Phyra77368;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_24 . CDS 157621 158037 . - 0 ID=Phyra77368;Parent=Phyra77368;rank=1 scaffold_24 . exon 157621 158037 . - . ID=Phyra77368.1;Parent=Phyra77368;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 158126 159214 . - . ID=Phyra77369;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000038;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 158126 159214 . - . ID=Phyra77369;Parent=Phyra77369;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 158126 159115 . - 0 ID=Phyra77369;Parent=Phyra77369;rank=2 scaffold_24 . exon 158126 159115 . - . ID=Phyra77369.2;Parent=Phyra77369;constitutive=1;rank=2 scaffold_24 . CDS 159143 159214 . - 0 ID=Phyra77369;Parent=Phyra77369;rank=1 scaffold_24 . repeat_region 159053 159256 . - . description=Polinton-1_PI scaffold_24 . biological_region 161636 161639 0.999 - . logic_name=eponine scaffold_24 . repeat_region 166728 166747 . ? . description=trf scaffold_24 . biological_region 167697 167703 0.999 - . logic_name=eponine scaffold_24 . biological_region 167779 167781 0.999 + . logic_name=eponine scaffold_24 ensembl protein_coding_gene 165567 166349 . + . ID=Phyra71513;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_24000004;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 165567 166349 . + . ID=Phyra71513;Parent=Phyra71513;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 165567 165673 . + 0 ID=Phyra71513;Parent=Phyra71513;rank=1 scaffold_24 . exon 165567 165673 . + . ID=Phyra71513.1;Parent=Phyra71513;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 165743 165810 . + 0 ID=Phyra71513;Parent=Phyra71513;rank=2 scaffold_24 . exon 165743 165810 . + . ID=Phyra71513.2;Parent=Phyra71513;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 165889 166349 . + 0 ID=Phyra71513;Parent=Phyra71513;rank=3 scaffold_24 . exon 165889 166349 . + . ID=Phyra71513.3;Parent=Phyra71513;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . exon 159143 159214 . - . ID=Phyra77369.1;Parent=Phyra77369;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 159530 161935 . - . ID=Phyra77370;biotype=protein_coding;description=Bifunctional dethiobiotin synthetase/adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Source:UniProtKB/TrEMBL%3BAcc:E6PBR0];external_name=BIODA;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 159530 161935 . - . ID=Phyra77370;Parent=Phyra77370;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 159530 161935 . - 0 ID=Phyra77370;Parent=Phyra77370;rank=1 scaffold_24 . exon 159530 161935 . - . ID=Phyra77370.1;Parent=Phyra77370;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 166558 167919 . - . ID=Phyra77373;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000042;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 166558 167919 . - . ID=Phyra77373;Parent=Phyra77373;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 166558 167919 . - 0 ID=Phyra77373;Parent=Phyra77373;rank=1 scaffold_24 . exon 166558 167919 . - . ID=Phyra77373.1;Parent=Phyra77373;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 168186 169199 . - . ID=Phyra77374;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000043;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 168186 169199 . - . ID=Phyra77374;Parent=Phyra77374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 168186 169199 . - 0 ID=Phyra77374;Parent=Phyra77374;rank=1 scaffold_24 . exon 168186 169199 . - . ID=Phyra77374.1;Parent=Phyra77374;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 164022 165406 . - . ID=Phyra94779;biotype=protein_coding;external_name=C_scaffold_24000007;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 164022 165406 . - . ID=Phyra94779;Parent=Phyra94779;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 164022 164333 . - 0 ID=Phyra94779;Parent=Phyra94779;rank=3 scaffold_24 . exon 164022 164333 . - . ID=Phyra94779.3;Parent=Phyra94779;constitutive=1;rank=3 scaffold_24 . CDS 164828 165088 . - 0 ID=Phyra94779;Parent=Phyra94779;rank=2 scaffold_24 . exon 164828 165088 . - . ID=Phyra94779.2;Parent=Phyra94779;constitutive=1;rank=2 scaffold_24 . CDS 165137 165406 . - 0 ID=Phyra94779;Parent=Phyra94779;rank=1 scaffold_24 . exon 165137 165406 . - . ID=Phyra94779.1;Parent=Phyra94779;constitutive=1;rank=1 scaffold_24 . repeat_region 172999 173006 . ? . description=dust scaffold_24 ensembl protein_coding_gene 174682 175992 . - . ID=Phyra77375;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000044;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 174682 175992 . - . ID=Phyra77375;Parent=Phyra77375;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 174682 175992 . - 0 ID=Phyra77375;Parent=Phyra77375;rank=1 scaffold_24 . exon 174682 175992 . - . ID=Phyra77375.1;Parent=Phyra77375;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 178121 179326 . + . ID=Phyra77376;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000045;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 178121 179326 . + . ID=Phyra77376;Parent=Phyra77376;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 178121 178289 . + 0 ID=Phyra77376;Parent=Phyra77376;rank=1 scaffold_24 . exon 178121 178289 . + . ID=Phyra77376.1;Parent=Phyra77376;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 178353 179326 . + 0 ID=Phyra77376;Parent=Phyra77376;rank=2 scaffold_24 . exon 178353 179326 . + . ID=Phyra77376.2;Parent=Phyra77376;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 ensembl protein_coding_gene 172896 173858 . - . ID=Phyra94782;biotype=protein_coding;external_name=C_scaffold_24000010;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 172896 173858 . - . ID=Phyra94782;Parent=Phyra94782;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 172896 172915 . - 0 ID=Phyra94782;Parent=Phyra94782;rank=3 scaffold_24 . exon 172896 172915 . - . ID=Phyra94782.3;Parent=Phyra94782;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 173024 173510 . - 0 ID=Phyra94782;Parent=Phyra94782;rank=2 scaffold_24 . exon 173024 173510 . - . ID=Phyra94782.2;Parent=Phyra94782;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_24 . CDS 173541 173858 . - 0 ID=Phyra94782;Parent=Phyra94782;rank=1 scaffold_24 . exon 173541 173858 . - . ID=Phyra94782.1;Parent=Phyra94782;constitutive=1;rank=1 scaffold_24 . biological_region 179823 179828 0.999 - . logic_name=eponine scaffold_24 . biological_region 179951 179955 0.999 - . logic_name=eponine scaffold_24 . biological_region 185671 185673 0.999 + . logic_name=eponine scaffold_24 . biological_region 185934 185939 0.999 + . logic_name=eponine scaffold_24 . biological_region 186640 186641 0.999 + . logic_name=eponine scaffold_24 . biological_region 186858 186863 0.999 + . logic_name=eponine scaffold_24 . biological_region 186987 186990 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 181859 183413 . - . ID=Phyra77378;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000047;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 181859 183413 . - . ID=Phyra77378;Parent=Phyra77378;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 181859 181884 . - 0 ID=Phyra77378;Parent=Phyra77378;rank=2 scaffold_24 . exon 181859 181884 . - . ID=Phyra77378.2;Parent=Phyra77378;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 181904 183413 . - 0 ID=Phyra77378;Parent=Phyra77378;rank=1 scaffold_24 . exon 181904 183413 . - . ID=Phyra77378.1;Parent=Phyra77378;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 ensembl protein_coding_gene 184660 186981 . - . ID=Phyra77379;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000048;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 184660 186981 . - . ID=Phyra77379;Parent=Phyra77379;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 184660 186981 . - 0 ID=Phyra77379;Parent=Phyra77379;rank=1 scaffold_24 . exon 184660 186981 . - . ID=Phyra77379.1;Parent=Phyra77379;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 188272 190344 . - . ID=Phyra77380;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000049;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 188272 190344 . - . ID=Phyra77380;Parent=Phyra77380;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 188272 190344 . - 0 ID=Phyra77380;Parent=Phyra77380;rank=1 scaffold_24 . exon 188272 190344 . - . ID=Phyra77380.1;Parent=Phyra77380;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 179421 181149 . - . ID=Phyra94783;biotype=protein_coding;external_name=C_scaffold_24000011;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 179421 181149 . - . ID=Phyra94783;Parent=Phyra94783;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 179421 180143 . - 0 ID=Phyra94783;Parent=Phyra94783;rank=4 scaffold_24 . exon 179421 180143 . - . ID=Phyra94783.4;Parent=Phyra94783;constitutive=1;rank=4 scaffold_24 . CDS 180201 180595 . - 0 ID=Phyra94783;Parent=Phyra94783;rank=3 scaffold_24 . exon 180201 180595 . - . ID=Phyra94783.3;Parent=Phyra94783;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 180719 180943 . - 0 ID=Phyra94783;Parent=Phyra94783;rank=2 scaffold_24 . exon 180719 180943 . - . ID=Phyra94783.2;Parent=Phyra94783;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 181023 181149 . - 0 ID=Phyra94783;Parent=Phyra94783;rank=1 scaffold_24 . exon 181023 181149 . - . ID=Phyra94783.1;Parent=Phyra94783;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . repeat_region 191184 191233 . ? . description=dust scaffold_24 . repeat_region 192435 192505 . ? . description=trf scaffold_24 ensembl protein_coding_gene 194317 195599 . + . ID=Phyra77383;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000052;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 194317 195599 . + . ID=Phyra77383;Parent=Phyra77383;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 194317 194332 . + 0 ID=Phyra77383;Parent=Phyra77383;rank=1 scaffold_24 . exon 194317 194332 . + . ID=Phyra77383.1;Parent=Phyra77383;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 194402 194558 . + 0 ID=Phyra77383;Parent=Phyra77383;rank=2 scaffold_24 . exon 194402 194558 . + . ID=Phyra77383.2;Parent=Phyra77383;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_24 . CDS 194631 194802 . + 0 ID=Phyra77383;Parent=Phyra77383;rank=3 scaffold_24 . exon 194631 194802 . + . ID=Phyra77383.3;Parent=Phyra77383;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 . CDS 194936 195031 . + 0 ID=Phyra77383;Parent=Phyra77383;rank=4 scaffold_24 . exon 194936 195031 . + . ID=Phyra77383.4;Parent=Phyra77383;constitutive=1;rank=4 scaffold_24 . CDS 195102 195342 . + 0 ID=Phyra77383;Parent=Phyra77383;rank=5 scaffold_24 . exon 195102 195342 . + . ID=Phyra77383.5;Parent=Phyra77383;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_24 . CDS 195412 195599 . + 0 ID=Phyra77383;Parent=Phyra77383;rank=6 scaffold_24 . exon 195412 195599 . + . ID=Phyra77383.6;Parent=Phyra77383;constitutive=1;ensembl_phase=1;rank=6 scaffold_24 ensembl protein_coding_gene 196880 198988 . + . ID=Phyra77384;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000053;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 196880 198988 . + . ID=Phyra77384;Parent=Phyra77384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 196880 197326 . + 0 ID=Phyra77384;Parent=Phyra77384;rank=1 scaffold_24 . exon 196880 197326 . + . ID=Phyra77384.1;Parent=Phyra77384;constitutive=1;rank=1 scaffold_24 . CDS 197368 197478 . + 0 ID=Phyra77384;Parent=Phyra77384;rank=2 scaffold_24 . exon 197368 197478 . + . ID=Phyra77384.2;Parent=Phyra77384;constitutive=1;rank=2 scaffold_24 . CDS 197534 198988 . + 0 ID=Phyra77384;Parent=Phyra77384;rank=3 scaffold_24 . exon 197534 198988 . + . ID=Phyra77384.3;Parent=Phyra77384;constitutive=1;rank=3 scaffold_24 ensembl protein_coding_gene 190648 192363 . + . ID=Phyra94786;biotype=protein_coding;external_name=C_scaffold_24000014;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 190648 192363 . + . ID=Phyra94786;Parent=Phyra94786;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 190648 191160 . + 0 ID=Phyra94786;Parent=Phyra94786;rank=1 scaffold_24 . exon 190648 191160 . + . ID=Phyra94786.1;Parent=Phyra94786;constitutive=1;rank=1 scaffold_24 . CDS 191248 192363 . + 0 ID=Phyra94786;Parent=Phyra94786;rank=2 scaffold_24 . exon 191248 192363 . + . ID=Phyra94786.2;Parent=Phyra94786;constitutive=1;rank=2 scaffold_24 ensembl protein_coding_gene 193095 193914 . + . ID=Phyra94787;biotype=protein_coding;external_name=C_scaffold_24000015;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 193095 193914 . + . ID=Phyra94787;Parent=Phyra94787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 193095 193185 . + 0 ID=Phyra94787;Parent=Phyra94787;rank=1 scaffold_24 . exon 193095 193185 . + . ID=Phyra94787.1;Parent=Phyra94787;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 193271 193914 . + 0 ID=Phyra94787;Parent=Phyra94787;rank=2 scaffold_24 . exon 193271 193914 . + . ID=Phyra94787.2;Parent=Phyra94787;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . biological_region 203952 203955 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 207040 210822 . - . ID=Phyra77385;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000054;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 207040 210822 . - . ID=Phyra77385;Parent=Phyra77385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 207040 207816 . - 0 ID=Phyra77385;Parent=Phyra77385;rank=4 scaffold_24 . exon 207040 207816 . - . ID=Phyra77385.4;Parent=Phyra77385;constitutive=1;rank=4 scaffold_24 . CDS 207885 207937 . - 0 ID=Phyra77385;Parent=Phyra77385;rank=3 scaffold_24 . exon 207885 207937 . - . ID=Phyra77385.3;Parent=Phyra77385;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 208013 209228 . - 0 ID=Phyra77385;Parent=Phyra77385;rank=2 scaffold_24 . exon 208013 209228 . - . ID=Phyra77385.2;Parent=Phyra77385;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_24 . CDS 209302 210822 . - 0 ID=Phyra77385;Parent=Phyra77385;rank=1 scaffold_24 . repeat_region 212602 212609 . ? . description=dust scaffold_24 . repeat_region 216093 216783 . ? . description=trf scaffold_24 . repeat_region 216093 216878 . ? . description=trf scaffold_24 . repeat_region 217473 217511 . ? . description=trf scaffold_24 . exon 209302 210822 . - . ID=Phyra77385.1;Parent=Phyra77385;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 213592 215648 . - . ID=Phyra77386;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000055;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 213592 215648 . - . ID=Phyra77386;Parent=Phyra77386;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 213592 213682 . - 0 ID=Phyra77386;Parent=Phyra77386;rank=2 scaffold_24 . exon 213592 213682 . - . ID=Phyra77386.2;Parent=Phyra77386;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 213724 215648 . - 0 ID=Phyra77386;Parent=Phyra77386;rank=1 scaffold_24 . exon 213724 215648 . - . ID=Phyra77386.1;Parent=Phyra77386;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 223604 225019 . - . ID=Phyra77387;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000056;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 223604 225019 . - . ID=Phyra77387;Parent=Phyra77387;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 223604 225019 . - 0 ID=Phyra77387;Parent=Phyra77387;rank=1 scaffold_24 . exon 223604 225019 . - . ID=Phyra77387.1;Parent=Phyra77387;constitutive=1;rank=1 scaffold_24 . repeat_region 228360 228378 . ? . description=dust scaffold_24 . repeat_region 228982 228989 . ? . description=dust scaffold_24 . repeat_region 229012 229027 . ? . description=dust scaffold_24 . repeat_region 230412 230419 . ? . description=dust scaffold_24 . repeat_region 234117 234125 . ? . description=dust scaffold_24 . repeat_region 234821 234828 . ? . description=dust scaffold_24 . repeat_region 236261 236277 . ? . description=dust scaffold_24 . biological_region 237113 237118 0.999 + . logic_name=eponine scaffold_24 ensembl protein_coding_gene 235921 236754 . - . ID=Phyra77388;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000057;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 235921 236754 . - . ID=Phyra77388;Parent=Phyra77388;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 235921 235946 . - 0 ID=Phyra77388;Parent=Phyra77388;rank=5 scaffold_24 . exon 235921 235946 . - . ID=Phyra77388.5;Parent=Phyra77388;constitutive=1;ensembl_phase=1;rank=5 scaffold_24 . CDS 236010 236144 . - 0 ID=Phyra77388;Parent=Phyra77388;rank=4 scaffold_24 . exon 236010 236144 . - . ID=Phyra77388.4;Parent=Phyra77388;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_24 . CDS 236300 236529 . - 0 ID=Phyra77388;Parent=Phyra77388;rank=3 scaffold_24 . exon 236300 236529 . - . ID=Phyra77388.3;Parent=Phyra77388;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_24 . CDS 236568 236673 . - 0 ID=Phyra77388;Parent=Phyra77388;rank=2 scaffold_24 . exon 236568 236673 . - . ID=Phyra77388.2;Parent=Phyra77388;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_24 . CDS 236748 236754 . - 0 ID=Phyra77388;Parent=Phyra77388;rank=1 scaffold_24 . exon 236748 236754 . - . ID=Phyra77388.1;Parent=Phyra77388;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 ensembl protein_coding_gene 237116 238322 . + . ID=Phyra77389;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000058;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 237116 238322 . + . ID=Phyra77389;Parent=Phyra77389;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 237116 238275 . + 0 ID=Phyra77389;Parent=Phyra77389;rank=1 scaffold_24 . exon 237116 238275 . + . ID=Phyra77389.1;Parent=Phyra77389;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 238313 238322 . + 0 ID=Phyra77389;Parent=Phyra77389;rank=2 scaffold_24 . exon 238313 238322 . + . ID=Phyra77389.2;Parent=Phyra77389;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 ensembl protein_coding_gene 238511 242581 . - . ID=Phyra77390;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000059;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 238511 242581 . - . ID=Phyra77390;Parent=Phyra77390;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 238511 242581 . - 0 ID=Phyra77390;Parent=Phyra77390;rank=1 scaffold_24 . exon 238511 242581 . - . ID=Phyra77390.1;Parent=Phyra77390;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 243524 246206 . - . ID=Phyra77391;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000060;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 243524 246206 . - . ID=Phyra77391;Parent=Phyra77391;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 243524 243565 . - 0 ID=Phyra77391;Parent=Phyra77391;rank=5 scaffold_24 . exon 243524 243565 . - . ID=Phyra77391.5;Parent=Phyra77391;constitutive=1;rank=5 scaffold_24 . CDS 243627 243701 . - 0 ID=Phyra77391;Parent=Phyra77391;rank=4 scaffold_24 . exon 243627 243701 . - . ID=Phyra77391.4;Parent=Phyra77391;constitutive=1;rank=4 scaffold_24 . CDS 243729 244763 . - 0 ID=Phyra77391;Parent=Phyra77391;rank=3 scaffold_24 . exon 243729 244763 . - . ID=Phyra77391.3;Parent=Phyra77391;constitutive=1;rank=3 scaffold_24 . CDS 244810 244828 . - 0 ID=Phyra77391;Parent=Phyra77391;rank=2 scaffold_24 . exon 244810 244828 . - . ID=Phyra77391.2;Parent=Phyra77391;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 244900 246206 . - 0 ID=Phyra77391;Parent=Phyra77391;rank=1 scaffold_24 . exon 244900 246206 . - . ID=Phyra77391.1;Parent=Phyra77391;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 246352 247617 . - . ID=Phyra77392;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000061;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 246352 247617 . - . ID=Phyra77392;Parent=Phyra77392;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 246352 247617 . - 0 ID=Phyra77392;Parent=Phyra77392;rank=1 scaffold_24 . exon 246352 247617 . - . ID=Phyra77392.1;Parent=Phyra77392;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 248413 248918 . + . ID=Phyra77393;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000062;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 248413 248918 . + . ID=Phyra77393;Parent=Phyra77393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 248413 248667 . + 0 ID=Phyra77393;Parent=Phyra77393;rank=1 scaffold_24 . exon 248413 248667 . + . ID=Phyra77393.1;Parent=Phyra77393;constitutive=1;rank=1 scaffold_24 . CDS 248748 248918 . + 0 ID=Phyra77393;Parent=Phyra77393;rank=2 scaffold_24 . exon 248748 248918 . + . ID=Phyra77393.2;Parent=Phyra77393;constitutive=1;rank=2 scaffold_24 ensembl protein_coding_gene 251132 253039 . + . ID=Phyra77394;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000063;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 251132 253039 . + . ID=Phyra77394;Parent=Phyra77394;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 251132 253039 . + 0 ID=Phyra77394;Parent=Phyra77394;rank=1 scaffold_24 . exon 251132 253039 . + . ID=Phyra77394.1;Parent=Phyra77394;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 257392 259051 . - . ID=Phyra77396;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000065;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 257392 259051 . - . ID=Phyra77396;Parent=Phyra77396;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 257392 257562 . - 0 ID=Phyra77396;Parent=Phyra77396;rank=5 scaffold_24 . exon 257392 257562 . - . ID=Phyra77396.5;Parent=Phyra77396;constitutive=1;rank=5 scaffold_24 . CDS 257643 258180 . - 0 ID=Phyra77396;Parent=Phyra77396;rank=4 scaffold_24 . exon 257643 258180 . - . ID=Phyra77396.4;Parent=Phyra77396;constitutive=1;ensembl_phase=2;rank=4 scaffold_24 . CDS 258249 258313 . - 0 ID=Phyra77396;Parent=Phyra77396;rank=3 scaffold_24 . CDS 258391 258479 . - 0 ID=Phyra77396;Parent=Phyra77396;rank=2 scaffold_24 . CDS 258541 259051 . - 0 ID=Phyra77396;Parent=Phyra77396;rank=1 scaffold_24 ensembl protein_coding_gene 254270 257235 . + . ID=Phyra94792;biotype=protein_coding;external_name=C_scaffold_24000020;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 254270 257235 . + . ID=Phyra94792;Parent=Phyra94792;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 254270 254298 . + 0 ID=Phyra94792;Parent=Phyra94792;rank=1 scaffold_24 . exon 254270 254298 . + . ID=Phyra94792.1;Parent=Phyra94792;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 254488 254726 . + 0 ID=Phyra94792;Parent=Phyra94792;rank=2 scaffold_24 . exon 254488 254726 . + . ID=Phyra94792.2;Parent=Phyra94792;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 254769 254833 . + 0 ID=Phyra94792;Parent=Phyra94792;rank=3 scaffold_24 . exon 254769 254833 . + . ID=Phyra94792.3;Parent=Phyra94792;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 255223 255456 . + 0 ID=Phyra94792;Parent=Phyra94792;rank=4 scaffold_24 . exon 255223 255456 . + . ID=Phyra94792.4;Parent=Phyra94792;constitutive=1;rank=4 scaffold_24 . CDS 255724 255780 . + 0 ID=Phyra94792;Parent=Phyra94792;rank=5 scaffold_24 . exon 255724 255780 . + . ID=Phyra94792.5;Parent=Phyra94792;constitutive=1;rank=5 scaffold_24 . CDS 255820 255886 . + 0 ID=Phyra94792;Parent=Phyra94792;rank=6 scaffold_24 . exon 255820 255886 . + . ID=Phyra94792.6;Parent=Phyra94792;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_24 . CDS 255965 256761 . + 0 ID=Phyra94792;Parent=Phyra94792;rank=7 scaffold_24 . exon 255965 256761 . + . ID=Phyra94792.7;Parent=Phyra94792;constitutive=1;ensembl_phase=1;rank=7 scaffold_24 . CDS 257008 257235 . + 0 ID=Phyra94792;Parent=Phyra94792;rank=8 scaffold_24 . exon 257008 257235 . + . ID=Phyra94792.8;Parent=Phyra94792;constitutive=1;rank=8 scaffold_24 . repeat_region 264313 264362 . ? . description=dust scaffold_24 . biological_region 264531 264532 0.999 + . logic_name=eponine scaffold_24 . exon 258249 258313 . - . ID=Phyra77396.3;Parent=Phyra77396;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_24 . exon 258391 258479 . - . ID=Phyra77396.2;Parent=Phyra77396;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . exon 258541 259051 . - . ID=Phyra77396.1;Parent=Phyra77396;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 ensembl protein_coding_gene 263164 264102 . - . ID=Phyra77397;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000066;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 263164 264102 . - . ID=Phyra77397;Parent=Phyra77397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 263164 264102 . - 0 ID=Phyra77397;Parent=Phyra77397;rank=1 scaffold_24 . exon 263164 264102 . - . ID=Phyra77397.1;Parent=Phyra77397;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 267329 269230 . - . ID=Phyra77398;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000067;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 267329 269230 . - . ID=Phyra77398;Parent=Phyra77398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 267329 269230 . - 0 ID=Phyra77398;Parent=Phyra77398;rank=1 scaffold_24 . exon 267329 269230 . - . ID=Phyra77398.1;Parent=Phyra77398;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 276042 277472 . - . ID=Phyra77401;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000070;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 276042 277472 . - . ID=Phyra77401;Parent=Phyra77401;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 276042 277472 . - 0 ID=Phyra77401;Parent=Phyra77401;rank=1 scaffold_24 . exon 276042 277472 . - . ID=Phyra77401.1;Parent=Phyra77401;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 269940 273255 . + . ID=Phyra94794;biotype=protein_coding;external_name=C_scaffold_24000022;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 269940 273255 . + . ID=Phyra94794;Parent=Phyra94794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 269940 271114 . + 0 ID=Phyra94794;Parent=Phyra94794;rank=1 scaffold_24 . exon 269940 271114 . + . ID=Phyra94794.1;Parent=Phyra94794;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 271354 271468 . + 0 ID=Phyra94794;Parent=Phyra94794;rank=2 scaffold_24 . exon 271354 271468 . + . ID=Phyra94794.2;Parent=Phyra94794;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 271531 272781 . + 0 ID=Phyra94794;Parent=Phyra94794;rank=3 scaffold_24 . exon 271531 272781 . + . ID=Phyra94794.3;Parent=Phyra94794;constitutive=1;rank=3 scaffold_24 . CDS 272856 273087 . + 0 ID=Phyra94794;Parent=Phyra94794;rank=4 scaffold_24 . exon 272856 273087 . + . ID=Phyra94794.4;Parent=Phyra94794;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_24 . CDS 273176 273255 . + 0 ID=Phyra94794;Parent=Phyra94794;rank=5 scaffold_24 . exon 273176 273255 . + . ID=Phyra94794.5;Parent=Phyra94794;constitutive=1;ensembl_phase=1;rank=5 scaffold_24 ensembl protein_coding_gene 273999 275210 . + . ID=Phyra94795;biotype=protein_coding;external_name=C_scaffold_24000023;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 273999 275210 . + . ID=Phyra94795;Parent=Phyra94795;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 273999 275210 . + 0 ID=Phyra94795;Parent=Phyra94795;rank=1 scaffold_24 . exon 273999 275210 . + . ID=Phyra94795.1;Parent=Phyra94795;constitutive=1;rank=1 scaffold_24 . biological_region 288178 288180 0.999 - . logic_name=eponine scaffold_24 . repeat_region 293408 293487 . ? . description=dust scaffold_24 . repeat_region 293412 293487 . ? . description=trf scaffold_24 . repeat_region 293412 293487 . ? . description=trf scaffold_24 . biological_region 296431 296433 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 292261 292593 . + . ID=Phyra45328;biotype=protein_coding;external_name=gwEuk.24.6.1;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 292261 292593 . + . ID=Phyra45328;Parent=Phyra45328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 292261 292593 . + 0 ID=Phyra45328;Parent=Phyra45328;rank=1 scaffold_24 . exon 292261 292593 . + . ID=Phyra45328.1;Parent=Phyra45328;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 288076 290156 . + . ID=Phyra77402;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000071;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 288076 290156 . + . ID=Phyra77402;Parent=Phyra77402;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 288076 288172 . + 0 ID=Phyra77402;Parent=Phyra77402;rank=1 scaffold_24 . exon 288076 288172 . + . ID=Phyra77402.1;Parent=Phyra77402;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 288230 288473 . + 0 ID=Phyra77402;Parent=Phyra77402;rank=2 scaffold_24 . exon 288230 288473 . + . ID=Phyra77402.2;Parent=Phyra77402;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_24 . CDS 288534 288611 . + 0 ID=Phyra77402;Parent=Phyra77402;rank=3 scaffold_24 . exon 288534 288611 . + . ID=Phyra77402.3;Parent=Phyra77402;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_24 . CDS 288670 288797 . + 0 ID=Phyra77402;Parent=Phyra77402;rank=4 scaffold_24 . exon 288670 288797 . + . ID=Phyra77402.4;Parent=Phyra77402;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_24 . CDS 288871 290156 . + 0 ID=Phyra77402;Parent=Phyra77402;rank=5 scaffold_24 . exon 288871 290156 . + . ID=Phyra77402.5;Parent=Phyra77402;constitutive=1;ensembl_phase=1;rank=5 scaffold_24 ensembl protein_coding_gene 293719 296193 . - . ID=Phyra77404;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000073;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 293719 296193 . - . ID=Phyra77404;Parent=Phyra77404;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 293719 294866 . - 0 ID=Phyra77404;Parent=Phyra77404;rank=4 scaffold_24 . exon 293719 294866 . - . ID=Phyra77404.4;Parent=Phyra77404;constitutive=1;ensembl_phase=1;rank=4 scaffold_24 . CDS 294900 294963 . - 0 ID=Phyra77404;Parent=Phyra77404;rank=3 scaffold_24 . exon 294900 294963 . - . ID=Phyra77404.3;Parent=Phyra77404;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_24 . CDS 295047 295930 . - 0 ID=Phyra77404;Parent=Phyra77404;rank=2 scaffold_24 . exon 295047 295930 . - . ID=Phyra77404.2;Parent=Phyra77404;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 296001 296193 . - 0 ID=Phyra77404;Parent=Phyra77404;rank=1 scaffold_24 . exon 296001 296193 . - . ID=Phyra77404.1;Parent=Phyra77404;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 ensembl protein_coding_gene 296635 301894 . + . ID=Phyra77405;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000074;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 296635 301894 . + . ID=Phyra77405;Parent=Phyra77405;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 296635 299556 . + 0 ID=Phyra77405;Parent=Phyra77405;rank=1 scaffold_24 . exon 296635 299556 . + . ID=Phyra77405.1;Parent=Phyra77405;constitutive=1;rank=1 scaffold_24 . CDS 299582 299590 . + 0 ID=Phyra77405;Parent=Phyra77405;rank=2 scaffold_24 . CDS 299683 300792 . + 0 ID=Phyra77405;Parent=Phyra77405;rank=3 scaffold_24 . CDS 300844 301611 . + 0 ID=Phyra77405;Parent=Phyra77405;rank=4 scaffold_24 . CDS 301685 301894 . + 0 ID=Phyra77405;Parent=Phyra77405;rank=5 scaffold_24 ensembl protein_coding_gene 302251 303246 . + . ID=Phyra45330;biotype=protein_coding;external_name=gwEuk.24.8.1;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 302251 303246 . + . ID=Phyra45330;Parent=Phyra45330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 302251 303246 . + 0 ID=Phyra45330;Parent=Phyra45330;rank=1 scaffold_24 . exon 302251 303246 . + . ID=Phyra45330.1;Parent=Phyra45330;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 306070 307512 . - . ID=Phyra71515;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_24000006;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 306070 307512 . - . ID=Phyra71515;Parent=Phyra71515;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 306070 307512 . - 0 ID=Phyra71515;Parent=Phyra71515;rank=1 scaffold_24 . exon 306070 307512 . - . ID=Phyra71515.1;Parent=Phyra71515;constitutive=1;rank=1 scaffold_24 . exon 299582 299590 . + . ID=Phyra77405.2;Parent=Phyra77405;constitutive=1;rank=2 scaffold_24 . exon 299683 300792 . + . ID=Phyra77405.3;Parent=Phyra77405;constitutive=1;rank=3 scaffold_24 . exon 300844 301611 . + . ID=Phyra77405.4;Parent=Phyra77405;constitutive=1;rank=4 scaffold_24 . exon 301685 301894 . + . ID=Phyra77405.5;Parent=Phyra77405;constitutive=1;rank=5 scaffold_24 ensembl protein_coding_gene 303495 305906 . + . ID=Phyra77407;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000076;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 303495 305906 . + . ID=Phyra77407;Parent=Phyra77407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . exon 303495 303634 . + . ID=Phyra77407.1;Parent=Phyra77407;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 303497 303634 . + 0 ID=Phyra77407;Parent=Phyra77407;rank=1 scaffold_24 . CDS 303714 305906 . + 0 ID=Phyra77407;Parent=Phyra77407;rank=2 scaffold_24 . exon 303714 305906 . + . ID=Phyra77407.2;Parent=Phyra77407;constitutive=1;rank=2 scaffold_24 . biological_region 307914 307918 0.999 - . logic_name=eponine scaffold_24 . biological_region 308138 308142 0.999 - . logic_name=eponine scaffold_24 . repeat_region 308324 308331 . ? . description=dust scaffold_24 . repeat_region 312829 312870 . ? . description=trf scaffold_24 . biological_region 313357 313362 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 307727 308281 . + . ID=Phyra71516;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_24000007;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 307727 308281 . + . ID=Phyra71516;Parent=Phyra71516;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 307727 308281 . + 0 ID=Phyra71516;Parent=Phyra71516;rank=1 scaffold_24 . exon 307727 308281 . + . ID=Phyra71516.1;Parent=Phyra71516;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 312872 314584 . - . ID=Phyra71517;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_24000008;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 312872 314584 . - . ID=Phyra71517;Parent=Phyra71517;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 312872 314584 . - 0 ID=Phyra71517;Parent=Phyra71517;rank=1 scaffold_24 . exon 312872 314584 . - . ID=Phyra71517.1;Parent=Phyra71517;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 315693 316793 . - . ID=Phyra71518;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_24000009;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 315693 316793 . - . ID=Phyra71518;Parent=Phyra71518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 315693 315981 . - 0 ID=Phyra71518;Parent=Phyra71518;rank=2 scaffold_24 . exon 315693 315981 . - . ID=Phyra71518.2;Parent=Phyra71518;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 316312 316793 . - 0 ID=Phyra71518;Parent=Phyra71518;rank=1 scaffold_24 . exon 316312 316793 . - . ID=Phyra71518.1;Parent=Phyra71518;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 308569 309300 . + . ID=Phyra77410;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000079;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 308569 309300 . + . ID=Phyra77410;Parent=Phyra77410;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 308569 309300 . + 0 ID=Phyra77410;Parent=Phyra77410;rank=1 scaffold_24 . exon 308569 309300 . + . ID=Phyra77410.1;Parent=Phyra77410;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 309563 311458 . + . ID=Phyra77411;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000080;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 309563 311458 . + . ID=Phyra77411;Parent=Phyra77411;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 309563 311458 . + 0 ID=Phyra77411;Parent=Phyra77411;rank=1 scaffold_24 . exon 309563 311458 . + . ID=Phyra77411.1;Parent=Phyra77411;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 311539 312659 . - . ID=Phyra77412;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000081;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 311539 312659 . - . ID=Phyra77412;Parent=Phyra77412;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 311539 311802 . - 0 ID=Phyra77412;Parent=Phyra77412;rank=2 scaffold_24 . exon 311539 311802 . - . ID=Phyra77412.2;Parent=Phyra77412;constitutive=1;rank=2 scaffold_24 . CDS 311865 312659 . - 0 ID=Phyra77412;Parent=Phyra77412;rank=1 scaffold_24 . exon 311865 312659 . - . ID=Phyra77412.1;Parent=Phyra77412;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 317465 318694 . - . ID=Phyra71519;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_24000010;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 317465 318694 . - . ID=Phyra71519;Parent=Phyra71519;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 317465 318694 . - 0 ID=Phyra71519;Parent=Phyra71519;rank=1 scaffold_24 . exon 317465 318694 . - . ID=Phyra71519.1;Parent=Phyra71519;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 319718 324097 . - . ID=Phyra77416;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000085;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 319718 324097 . - . ID=Phyra77416;Parent=Phyra77416;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 319718 324097 . - 0 ID=Phyra77416;Parent=Phyra77416;rank=1 scaffold_24 . exon 319718 324097 . - . ID=Phyra77416.1;Parent=Phyra77416;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 325829 326764 . + . ID=Phyra77417;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000086;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 325829 326764 . + . ID=Phyra77417;Parent=Phyra77417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 325829 325942 . + 0 ID=Phyra77417;Parent=Phyra77417;rank=1 scaffold_24 . exon 325829 325942 . + . ID=Phyra77417.1;Parent=Phyra77417;constitutive=1;rank=1 scaffold_24 . CDS 326033 326764 . + 0 ID=Phyra77417;Parent=Phyra77417;rank=2 scaffold_24 . exon 326033 326764 . + . ID=Phyra77417.2;Parent=Phyra77417;constitutive=1;rank=2 scaffold_24 . repeat_region 331534 331568 . ? . description=trf scaffold_24 . biological_region 332989 332995 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 332601 339020 . + . ID=Phyra77418;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000087;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 332601 339020 . + . ID=Phyra77418;Parent=Phyra77418;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 332601 338894 . + 0 ID=Phyra77418;Parent=Phyra77418;rank=1 scaffold_24 . exon 332601 338894 . + . ID=Phyra77418.1;Parent=Phyra77418;constitutive=1;rank=1 scaffold_24 . CDS 338961 339020 . + 0 ID=Phyra77418;Parent=Phyra77418;rank=2 scaffold_24 . repeat_region 345895 345902 . ? . description=dust scaffold_24 . exon 338961 339020 . + . ID=Phyra77418.2;Parent=Phyra77418;constitutive=1;rank=2 scaffold_24 ensembl protein_coding_gene 339111 339857 . - . ID=Phyra77419;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000088;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 339111 339857 . - . ID=Phyra77419;Parent=Phyra77419;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 339111 339857 . - 0 ID=Phyra77419;Parent=Phyra77419;rank=1 scaffold_24 . exon 339111 339857 . - . ID=Phyra77419.1;Parent=Phyra77419;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 340520 343608 . + . ID=Phyra77420;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000089;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 340520 343608 . + . ID=Phyra77420;Parent=Phyra77420;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 340520 340858 . + 0 ID=Phyra77420;Parent=Phyra77420;rank=1 scaffold_24 . exon 340520 340858 . + . ID=Phyra77420.1;Parent=Phyra77420;constitutive=1;rank=1 scaffold_24 . CDS 340921 341165 . + 0 ID=Phyra77420;Parent=Phyra77420;rank=2 scaffold_24 . exon 340921 341165 . + . ID=Phyra77420.2;Parent=Phyra77420;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_24 . CDS 341249 342943 . + 0 ID=Phyra77420;Parent=Phyra77420;rank=3 scaffold_24 . exon 341249 342943 . + . ID=Phyra77420.3;Parent=Phyra77420;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_24 . CDS 343006 343077 . + 0 ID=Phyra77420;Parent=Phyra77420;rank=4 scaffold_24 . exon 343006 343077 . + . ID=Phyra77420.4;Parent=Phyra77420;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_24 . CDS 343161 343392 . + 0 ID=Phyra77420;Parent=Phyra77420;rank=5 scaffold_24 . exon 343161 343392 . + . ID=Phyra77420.5;Parent=Phyra77420;constitutive=1;ensembl_phase=2;rank=5 scaffold_24 . CDS 343465 343608 . + 0 ID=Phyra77420;Parent=Phyra77420;rank=6 scaffold_24 . exon 343465 343608 . + . ID=Phyra77420.6;Parent=Phyra77420;constitutive=1;rank=6 scaffold_24 ensembl protein_coding_gene 343750 345452 . - . ID=Phyra77421;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000090;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 343750 345452 . - . ID=Phyra77421;Parent=Phyra77421;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 343750 343908 . - 0 ID=Phyra77421;Parent=Phyra77421;rank=3 scaffold_24 . exon 343750 343908 . - . ID=Phyra77421.3;Parent=Phyra77421;constitutive=1;rank=3 scaffold_24 . CDS 343996 344666 . - 0 ID=Phyra77421;Parent=Phyra77421;rank=2 scaffold_24 . exon 343996 344666 . - . ID=Phyra77421.2;Parent=Phyra77421;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 344918 345452 . - 0 ID=Phyra77421;Parent=Phyra77421;rank=1 scaffold_24 . exon 344918 345452 . - . ID=Phyra77421.1;Parent=Phyra77421;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . biological_region 347216 347221 0.999 + . logic_name=eponine scaffold_24 . biological_region 349682 349687 0.999 + . logic_name=eponine scaffold_24 . biological_region 352952 352954 0.999 - . logic_name=eponine scaffold_24 . biological_region 355264 355268 0.999 + . logic_name=eponine scaffold_24 . biological_region 355620 355621 0.999 + . logic_name=eponine scaffold_24 ensembl protein_coding_gene 347235 348109 . + . ID=Phyra77422;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000091;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 347235 348109 . + . ID=Phyra77422;Parent=Phyra77422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 347235 347486 . + 0 ID=Phyra77422;Parent=Phyra77422;rank=1 scaffold_24 . exon 347235 347486 . + . ID=Phyra77422.1;Parent=Phyra77422;constitutive=1;rank=1 scaffold_24 . CDS 347547 347948 . + 0 ID=Phyra77422;Parent=Phyra77422;rank=2 scaffold_24 . exon 347547 347948 . + . ID=Phyra77422.2;Parent=Phyra77422;constitutive=1;rank=2 scaffold_24 . CDS 348011 348109 . + 0 ID=Phyra77422;Parent=Phyra77422;rank=3 scaffold_24 . exon 348011 348109 . + . ID=Phyra77422.3;Parent=Phyra77422;constitutive=1;rank=3 scaffold_24 ensembl protein_coding_gene 348475 349046 . - . ID=Phyra77423;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000092;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 348475 349046 . - . ID=Phyra77423;Parent=Phyra77423;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 348475 348726 . - 0 ID=Phyra77423;Parent=Phyra77423;rank=2 scaffold_24 . exon 348475 348726 . - . ID=Phyra77423.2;Parent=Phyra77423;constitutive=1;rank=2 scaffold_24 . CDS 348801 349046 . - 0 ID=Phyra77423;Parent=Phyra77423;rank=1 scaffold_24 . exon 348801 349046 . - . ID=Phyra77423.1;Parent=Phyra77423;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 349391 352290 . + . ID=Phyra77424;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000093;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 349391 352290 . + . ID=Phyra77424;Parent=Phyra77424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 349391 350244 . + 0 ID=Phyra77424;Parent=Phyra77424;rank=1 scaffold_24 . exon 349391 350244 . + . ID=Phyra77424.1;Parent=Phyra77424;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 350302 350455 . + 0 ID=Phyra77424;Parent=Phyra77424;rank=2 scaffold_24 . exon 350302 350455 . + . ID=Phyra77424.2;Parent=Phyra77424;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 350682 350819 . + 0 ID=Phyra77424;Parent=Phyra77424;rank=3 scaffold_24 . exon 350682 350819 . + . ID=Phyra77424.3;Parent=Phyra77424;constitutive=1;rank=3 scaffold_24 . CDS 351138 351545 . + 0 ID=Phyra77424;Parent=Phyra77424;rank=4 scaffold_24 . exon 351138 351545 . + . ID=Phyra77424.4;Parent=Phyra77424;constitutive=1;rank=4 scaffold_24 . CDS 351632 351716 . + 0 ID=Phyra77424;Parent=Phyra77424;rank=5 scaffold_24 . exon 351632 351716 . + . ID=Phyra77424.5;Parent=Phyra77424;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_24 . CDS 351790 352122 . + 0 ID=Phyra77424;Parent=Phyra77424;rank=6 scaffold_24 . exon 351790 352122 . + . ID=Phyra77424.6;Parent=Phyra77424;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_24 . CDS 352193 352290 . + 0 ID=Phyra77424;Parent=Phyra77424;rank=7 scaffold_24 . exon 352193 352290 . + . ID=Phyra77424.7;Parent=Phyra77424;constitutive=1;ensembl_phase=1;rank=7 scaffold_24 ensembl protein_coding_gene 352540 353037 . - . ID=Phyra77425;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000094;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 352540 353037 . - . ID=Phyra77425;Parent=Phyra77425;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 352540 352629 . - 0 ID=Phyra77425;Parent=Phyra77425;rank=3 scaffold_24 . exon 352540 352629 . - . ID=Phyra77425.3;Parent=Phyra77425;constitutive=1;rank=3 scaffold_24 . CDS 352702 352776 . - 0 ID=Phyra77425;Parent=Phyra77425;rank=2 scaffold_24 . exon 352702 352776 . - . ID=Phyra77425.2;Parent=Phyra77425;constitutive=1;rank=2 scaffold_24 . CDS 352855 353037 . - 0 ID=Phyra77425;Parent=Phyra77425;rank=1 scaffold_24 . exon 352855 353037 . - . ID=Phyra77425.1;Parent=Phyra77425;constitutive=1;rank=1 scaffold_24 . repeat_region 361811 361821 . ? . description=dust scaffold_24 . repeat_region 362827 362884 . ? . description=trf scaffold_24 ensembl protein_coding_gene 359348 360765 . + . ID=Phyra77426;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000095;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 359348 360765 . + . ID=Phyra77426;Parent=Phyra77426;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 359348 359581 . + 0 ID=Phyra77426;Parent=Phyra77426;rank=1 scaffold_24 . exon 359348 359581 . + . ID=Phyra77426.1;Parent=Phyra77426;constitutive=1;rank=1 scaffold_24 . CDS 359653 360765 . + 0 ID=Phyra77426;Parent=Phyra77426;rank=2 scaffold_24 . exon 359653 360765 . + . ID=Phyra77426.2;Parent=Phyra77426;constitutive=1;rank=2 scaffold_24 ensembl protein_coding_gene 362935 367035 . - . ID=Phyra77427;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000096;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 362935 367035 . - . ID=Phyra77427;Parent=Phyra77427;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 362935 367035 . - 0 ID=Phyra77427;Parent=Phyra77427;rank=1 scaffold_24 . exon 362935 367035 . - . ID=Phyra77427.1;Parent=Phyra77427;constitutive=1;rank=1 scaffold_24 . biological_region 372259 372264 0.999 - . logic_name=eponine scaffold_24 . biological_region 372314 372319 0.999 + . logic_name=eponine scaffold_24 . biological_region 372322 372324 0.999 - . logic_name=eponine scaffold_24 . biological_region 372352 372360 0.999 - . logic_name=eponine scaffold_24 . biological_region 373498 373500 0.999 + . logic_name=eponine scaffold_24 . biological_region 373626 373630 0.999 + . logic_name=eponine scaffold_24 ensembl protein_coding_gene 370960 372453 . - . ID=Phyra77429;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000098;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 370960 372453 . - . ID=Phyra77429;Parent=Phyra77429;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 370960 372453 . - 0 ID=Phyra77429;Parent=Phyra77429;rank=1 scaffold_24 . exon 370960 372453 . - . ID=Phyra77429.1;Parent=Phyra77429;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 375517 378637 . + . ID=Phyra77431;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000100;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 375517 378637 . + . ID=Phyra77431;Parent=Phyra77431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 375517 378399 . + 0 ID=Phyra77431;Parent=Phyra77431;rank=1 scaffold_24 . exon 375517 378399 . + . ID=Phyra77431.1;Parent=Phyra77431;constitutive=1;rank=1 scaffold_24 . CDS 378593 378637 . + 0 ID=Phyra77431;Parent=Phyra77431;rank=2 scaffold_24 ensembl protein_coding_gene 368407 370772 . - . ID=Phyra94803;biotype=protein_coding;external_name=C_scaffold_24000031;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 368407 370772 . - . ID=Phyra94803;Parent=Phyra94803;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 368407 368474 . - 0 ID=Phyra94803;Parent=Phyra94803;rank=8 scaffold_24 . exon 368407 368474 . - . ID=Phyra94803.8;Parent=Phyra94803;constitutive=1;ensembl_phase=1;rank=8 scaffold_24 . CDS 368660 368829 . - 0 ID=Phyra94803;Parent=Phyra94803;rank=7 scaffold_24 . exon 368660 368829 . - . ID=Phyra94803.7;Parent=Phyra94803;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_24 . CDS 368920 369044 . - 0 ID=Phyra94803;Parent=Phyra94803;rank=6 scaffold_24 . exon 368920 369044 . - . ID=Phyra94803.6;Parent=Phyra94803;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_24 . CDS 369136 369244 . - 0 ID=Phyra94803;Parent=Phyra94803;rank=5 scaffold_24 . exon 369136 369244 . - . ID=Phyra94803.5;Parent=Phyra94803;constitutive=1;ensembl_phase=2;rank=5 scaffold_24 . CDS 369308 369355 . - 0 ID=Phyra94803;Parent=Phyra94803;rank=4 scaffold_24 . exon 369308 369355 . - . ID=Phyra94803.4;Parent=Phyra94803;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_24 . CDS 369898 370090 . - 0 ID=Phyra94803;Parent=Phyra94803;rank=3 scaffold_24 . exon 369898 370090 . - . ID=Phyra94803.3;Parent=Phyra94803;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_24 . CDS 370142 370336 . - 0 ID=Phyra94803;Parent=Phyra94803;rank=2 scaffold_24 . exon 370142 370336 . - . ID=Phyra94803.2;Parent=Phyra94803;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 370568 370772 . - 0 ID=Phyra94803;Parent=Phyra94803;rank=1 scaffold_24 . exon 370568 370772 . - . ID=Phyra94803.1;Parent=Phyra94803;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 ensembl protein_coding_gene 373386 375290 . - . ID=Phyra94805;biotype=protein_coding;external_name=C_scaffold_24000033;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 373386 375290 . - . ID=Phyra94805;Parent=Phyra94805;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 373386 373439 . - 0 ID=Phyra94805;Parent=Phyra94805;rank=5 scaffold_24 . exon 373386 373439 . - . ID=Phyra94805.5;Parent=Phyra94805;constitutive=1;rank=5 scaffold_24 . CDS 373504 373946 . - 0 ID=Phyra94805;Parent=Phyra94805;rank=4 scaffold_24 . exon 373504 373946 . - . ID=Phyra94805.4;Parent=Phyra94805;constitutive=1;ensembl_phase=1;rank=4 scaffold_24 . CDS 374015 374609 . - 0 ID=Phyra94805;Parent=Phyra94805;rank=3 scaffold_24 . exon 374015 374609 . - . ID=Phyra94805.3;Parent=Phyra94805;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_24 . CDS 374674 374993 . - 0 ID=Phyra94805;Parent=Phyra94805;rank=2 scaffold_24 . exon 374674 374993 . - . ID=Phyra94805.2;Parent=Phyra94805;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 375059 375290 . - 0 ID=Phyra94805;Parent=Phyra94805;rank=1 scaffold_24 . exon 375059 375290 . - . ID=Phyra94805.1;Parent=Phyra94805;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . repeat_region 382477 382504 . ? . description=dust scaffold_24 . exon 378593 378637 . + . ID=Phyra77431.2;Parent=Phyra77431;constitutive=1;rank=2 scaffold_24 ensembl protein_coding_gene 378883 381898 . - . ID=Phyra77432;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000101;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 378883 381898 . - . ID=Phyra77432;Parent=Phyra77432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 378883 378993 . - 0 ID=Phyra77432;Parent=Phyra77432;rank=7 scaffold_24 . exon 378883 378993 . - . ID=Phyra77432.7;Parent=Phyra77432;constitutive=1;rank=7 scaffold_24 . CDS 379059 379235 . - 0 ID=Phyra77432;Parent=Phyra77432;rank=6 scaffold_24 . exon 379059 379235 . - . ID=Phyra77432.6;Parent=Phyra77432;constitutive=1;rank=6 scaffold_24 . CDS 379301 379438 . - 0 ID=Phyra77432;Parent=Phyra77432;rank=5 scaffold_24 . exon 379301 379438 . - . ID=Phyra77432.5;Parent=Phyra77432;constitutive=1;rank=5 scaffold_24 . CDS 379505 379777 . - 0 ID=Phyra77432;Parent=Phyra77432;rank=4 scaffold_24 . exon 379505 379777 . - . ID=Phyra77432.4;Parent=Phyra77432;constitutive=1;rank=4 scaffold_24 . CDS 379849 380586 . - 0 ID=Phyra77432;Parent=Phyra77432;rank=3 scaffold_24 . exon 379849 380586 . - . ID=Phyra77432.3;Parent=Phyra77432;constitutive=1;rank=3 scaffold_24 . CDS 380657 380780 . - 0 ID=Phyra77432;Parent=Phyra77432;rank=2 scaffold_24 . exon 380657 380780 . - . ID=Phyra77432.2;Parent=Phyra77432;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 380853 381898 . - 0 ID=Phyra77432;Parent=Phyra77432;rank=1 scaffold_24 . exon 380853 381898 . - . ID=Phyra77432.1;Parent=Phyra77432;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 382380 384275 . - . ID=Phyra77433;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000102;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 382380 384275 . - . ID=Phyra77433;Parent=Phyra77433;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 382380 382475 . - 0 ID=Phyra77433;Parent=Phyra77433;rank=6 scaffold_24 . exon 382380 382475 . - . ID=Phyra77433.6;Parent=Phyra77433;constitutive=1;rank=6 scaffold_24 . CDS 382542 382745 . - 0 ID=Phyra77433;Parent=Phyra77433;rank=5 scaffold_24 . exon 382542 382745 . - . ID=Phyra77433.5;Parent=Phyra77433;constitutive=1;rank=5 scaffold_24 . CDS 382811 382933 . - 0 ID=Phyra77433;Parent=Phyra77433;rank=4 scaffold_24 . exon 382811 382933 . - . ID=Phyra77433.4;Parent=Phyra77433;constitutive=1;rank=4 scaffold_24 . CDS 383003 383185 . - 0 ID=Phyra77433;Parent=Phyra77433;rank=3 scaffold_24 . exon 383003 383185 . - . ID=Phyra77433.3;Parent=Phyra77433;constitutive=1;rank=3 scaffold_24 . CDS 383247 383654 . - 0 ID=Phyra77433;Parent=Phyra77433;rank=2 scaffold_24 . exon 383247 383654 . - . ID=Phyra77433.2;Parent=Phyra77433;constitutive=1;rank=2 scaffold_24 . CDS 383739 384275 . - 0 ID=Phyra77433;Parent=Phyra77433;rank=1 scaffold_24 . exon 383739 384275 . - . ID=Phyra77433.1;Parent=Phyra77433;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 385475 386812 . - . ID=Phyra77434;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000103;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 385475 386812 . - . ID=Phyra77434;Parent=Phyra77434;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 385475 386812 . - 0 ID=Phyra77434;Parent=Phyra77434;rank=1 scaffold_24 . exon 385475 386812 . - . ID=Phyra77434.1;Parent=Phyra77434;constitutive=1;rank=1 scaffold_24 . biological_region 387197 387201 0.999 + . logic_name=eponine scaffold_24 . biological_region 390509 390510 0.999 - . logic_name=eponine scaffold_24 . repeat_region 392432 392480 . ? . description=trf scaffold_24 . biological_region 393093 393095 0.999 + . logic_name=eponine scaffold_24 . biological_region 393133 393139 0.999 + . logic_name=eponine scaffold_24 . biological_region 393164 393167 0.999 - . logic_name=eponine scaffold_24 . biological_region 393200 393206 0.999 - . logic_name=eponine scaffold_24 . biological_region 394557 394558 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 387574 391420 . - . ID=Phyra77435;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000104;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 387574 391420 . - . ID=Phyra77435;Parent=Phyra77435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 387574 387585 . - 0 ID=Phyra77435;Parent=Phyra77435;rank=5 scaffold_24 . exon 387574 387585 . - . ID=Phyra77435.5;Parent=Phyra77435;constitutive=1;rank=5 scaffold_24 . CDS 387611 388523 . - 0 ID=Phyra77435;Parent=Phyra77435;rank=4 scaffold_24 . exon 387611 388523 . - . ID=Phyra77435.4;Parent=Phyra77435;constitutive=1;ensembl_phase=2;rank=4 scaffold_24 . CDS 388605 389192 . - 0 ID=Phyra77435;Parent=Phyra77435;rank=3 scaffold_24 . exon 388605 389192 . - . ID=Phyra77435.3;Parent=Phyra77435;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_24 . CDS 389447 389605 . - 0 ID=Phyra77435;Parent=Phyra77435;rank=2 scaffold_24 . exon 389447 389605 . - . ID=Phyra77435.2;Parent=Phyra77435;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_24 . CDS 389655 391420 . - 0 ID=Phyra77435;Parent=Phyra77435;rank=1 scaffold_24 . exon 389655 391420 . - . ID=Phyra77435.1;Parent=Phyra77435;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 392174 393304 . - . ID=Phyra77436;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000105;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 392174 393304 . - . ID=Phyra77436;Parent=Phyra77436;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 392174 393304 . - 0 ID=Phyra77436;Parent=Phyra77436;rank=1 scaffold_24 . exon 392174 393304 . - . ID=Phyra77436.1;Parent=Phyra77436;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 393911 395005 . + . ID=Phyra77437;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000106;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 393911 395005 . + . ID=Phyra77437;Parent=Phyra77437;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 393911 395005 . + 0 ID=Phyra77437;Parent=Phyra77437;rank=1 scaffold_24 . exon 393911 395005 . + . ID=Phyra77437.1;Parent=Phyra77437;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 401247 402431 . - . ID=Phyra45371;biotype=protein_coding;external_name=gwEuk.24.49.1;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 401247 402431 . - . ID=Phyra45371;Parent=Phyra45371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 401247 402431 . - 0 ID=Phyra45371;Parent=Phyra45371;rank=1 scaffold_24 . exon 401247 402431 . - . ID=Phyra45371.1;Parent=Phyra45371;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 397561 398286 . + . ID=Phyra77438;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000107;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 397561 398286 . + . ID=Phyra77438;Parent=Phyra77438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 397561 398286 . + 0 ID=Phyra77438;Parent=Phyra77438;rank=1 scaffold_24 . exon 397561 398286 . + . ID=Phyra77438.1;Parent=Phyra77438;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 403749 405254 . - . ID=Phyra77440;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000109;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 403749 405254 . - . ID=Phyra77440;Parent=Phyra77440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 403749 405254 . - 0 ID=Phyra77440;Parent=Phyra77440;rank=1 scaffold_24 . exon 403749 405254 . - . ID=Phyra77440.1;Parent=Phyra77440;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 405973 407082 . + . ID=Phyra77441;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000110;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 405973 407082 . + . ID=Phyra77441;Parent=Phyra77441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 405973 406185 . + 0 ID=Phyra77441;Parent=Phyra77441;rank=1 scaffold_24 . exon 405973 406185 . + . ID=Phyra77441.1;Parent=Phyra77441;constitutive=1;rank=1 scaffold_24 . CDS 406252 406890 . + 0 ID=Phyra77441;Parent=Phyra77441;rank=2 scaffold_24 . exon 406252 406890 . + . ID=Phyra77441.2;Parent=Phyra77441;constitutive=1;rank=2 scaffold_24 . CDS 406978 407082 . + 0 ID=Phyra77441;Parent=Phyra77441;rank=3 scaffold_24 . biological_region 407812 407818 0.999 + . logic_name=eponine scaffold_24 . repeat_region 412282 412292 . ? . description=dust scaffold_24 ensembl protein_coding_gene 410218 410967 . + . ID=Phyra45373;biotype=protein_coding;external_name=gwEuk.24.51.1;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 410218 410967 . + . ID=Phyra45373;Parent=Phyra45373;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 410218 410313 . + 0 ID=Phyra45373;Parent=Phyra45373;rank=1 scaffold_24 . exon 410218 410313 . + . ID=Phyra45373.1;Parent=Phyra45373;constitutive=1;rank=1 scaffold_24 . CDS 410386 410454 . + 0 ID=Phyra45373;Parent=Phyra45373;rank=2 scaffold_24 . exon 410386 410454 . + . ID=Phyra45373.2;Parent=Phyra45373;constitutive=1;rank=2 scaffold_24 . CDS 410514 410585 . + 0 ID=Phyra45373;Parent=Phyra45373;rank=3 scaffold_24 . exon 410514 410585 . + . ID=Phyra45373.3;Parent=Phyra45373;constitutive=1;rank=3 scaffold_24 . CDS 410672 410791 . + 0 ID=Phyra45373;Parent=Phyra45373;rank=4 scaffold_24 . exon 410672 410791 . + . ID=Phyra45373.4;Parent=Phyra45373;constitutive=1;rank=4 scaffold_24 . CDS 410860 410967 . + 0 ID=Phyra45373;Parent=Phyra45373;rank=5 scaffold_24 . exon 410860 410967 . + . ID=Phyra45373.5;Parent=Phyra45373;constitutive=1;rank=5 scaffold_24 ensembl protein_coding_gene 411375 413863 . - . ID=Phyra71522;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_24000013;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 411375 413863 . - . ID=Phyra71522;Parent=Phyra71522;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 411375 412075 . - 0 ID=Phyra71522;Parent=Phyra71522;rank=5 scaffold_24 . exon 411375 412075 . - . ID=Phyra71522.5;Parent=Phyra71522;constitutive=1;ensembl_phase=1;rank=5 scaffold_24 . CDS 412100 412131 . - 0 ID=Phyra71522;Parent=Phyra71522;rank=4 scaffold_24 . exon 412100 412131 . - . ID=Phyra71522.4;Parent=Phyra71522;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_24 . CDS 412193 412266 . - 0 ID=Phyra71522;Parent=Phyra71522;rank=3 scaffold_24 . exon 412193 412266 . - . ID=Phyra71522.3;Parent=Phyra71522;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_24 . CDS 412346 413513 . - 0 ID=Phyra71522;Parent=Phyra71522;rank=2 scaffold_24 . exon 412346 413513 . - . ID=Phyra71522.2;Parent=Phyra71522;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 413583 413863 . - 0 ID=Phyra71522;Parent=Phyra71522;rank=1 scaffold_24 . exon 413583 413863 . - . ID=Phyra71522.1;Parent=Phyra71522;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . exon 406978 407082 . + . ID=Phyra77441.3;Parent=Phyra77441;constitutive=1;rank=3 scaffold_24 ensembl protein_coding_gene 407536 407903 . - . ID=Phyra77442;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000111;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 407536 407903 . - . ID=Phyra77442;Parent=Phyra77442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 407536 407719 . - 0 ID=Phyra77442;Parent=Phyra77442;rank=2 scaffold_24 . exon 407536 407719 . - . ID=Phyra77442.2;Parent=Phyra77442;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 407782 407903 . - 0 ID=Phyra77442;Parent=Phyra77442;rank=1 scaffold_24 . exon 407782 407903 . - . ID=Phyra77442.1;Parent=Phyra77442;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 409053 409482 . - . ID=Phyra77443;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000112;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 409053 409482 . - . ID=Phyra77443;Parent=Phyra77443;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 409053 409248 . - 0 ID=Phyra77443;Parent=Phyra77443;rank=2 scaffold_24 . exon 409053 409248 . - . ID=Phyra77443.2;Parent=Phyra77443;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 409328 409482 . - 0 ID=Phyra77443;Parent=Phyra77443;rank=1 scaffold_24 . exon 409328 409482 . - . ID=Phyra77443.1;Parent=Phyra77443;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 414539 416629 . + . ID=Phyra77446;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000115;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 414539 416629 . + . ID=Phyra77446;Parent=Phyra77446;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 414539 416629 . + 0 ID=Phyra77446;Parent=Phyra77446;rank=1 scaffold_24 . exon 414539 416629 . + . ID=Phyra77446.1;Parent=Phyra77446;constitutive=1;rank=1 scaffold_24 . repeat_region 418173 418260 . ? . description=trf scaffold_24 ensembl protein_coding_gene 423188 429360 . + . ID=Phyra77447;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000116;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 423188 429360 . + . ID=Phyra77447;Parent=Phyra77447;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 423188 423240 . + 0 ID=Phyra77447;Parent=Phyra77447;rank=1 scaffold_24 . exon 423188 423240 . + . ID=Phyra77447.1;Parent=Phyra77447;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 423324 423496 . + 0 ID=Phyra77447;Parent=Phyra77447;rank=2 scaffold_24 . exon 423324 423496 . + . ID=Phyra77447.2;Parent=Phyra77447;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 423564 424049 . + 0 ID=Phyra77447;Parent=Phyra77447;rank=3 scaffold_24 . exon 423564 424049 . + . ID=Phyra77447.3;Parent=Phyra77447;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 424119 424290 . + 0 ID=Phyra77447;Parent=Phyra77447;rank=4 scaffold_24 . exon 424119 424290 . + . ID=Phyra77447.4;Parent=Phyra77447;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_24 . CDS 424354 424696 . + 0 ID=Phyra77447;Parent=Phyra77447;rank=5 scaffold_24 . exon 424354 424696 . + . ID=Phyra77447.5;Parent=Phyra77447;constitutive=1;ensembl_phase=2;rank=5 scaffold_24 . CDS 424716 424794 . + 0 ID=Phyra77447;Parent=Phyra77447;rank=6 scaffold_24 . exon 424716 424794 . + . ID=Phyra77447.6;Parent=Phyra77447;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_24 . CDS 424865 426868 . + 0 ID=Phyra77447;Parent=Phyra77447;rank=7 scaffold_24 . exon 424865 426868 . + . ID=Phyra77447.7;Parent=Phyra77447;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_24 . CDS 426949 426953 . + 0 ID=Phyra77447;Parent=Phyra77447;rank=8 scaffold_24 . CDS 427200 429023 . + 0 ID=Phyra77447;Parent=Phyra77447;rank=9 scaffold_24 . CDS 429057 429075 . + 0 ID=Phyra77447;Parent=Phyra77447;rank=10 scaffold_24 . CDS 429329 429360 . + 0 ID=Phyra77447;Parent=Phyra77447;rank=11 scaffold_24 . biological_region 429795 429798 0.999 + . logic_name=eponine scaffold_24 . repeat_region 431962 432030 . ? . description=dust scaffold_24 . exon 426949 426953 . + . ID=Phyra77447.8;Parent=Phyra77447;constitutive=1;ensembl_phase=1;rank=8 scaffold_24 . exon 427200 429023 . + . ID=Phyra77447.9;Parent=Phyra77447;constitutive=1;rank=9 scaffold_24 . exon 429057 429075 . + . ID=Phyra77447.10;Parent=Phyra77447;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_24 . exon 429329 429360 . + . ID=Phyra77447.11;Parent=Phyra77447;constitutive=1;ensembl_phase=1;rank=11 scaffold_24 ensembl protein_coding_gene 430354 430695 . + . ID=Phyra77448;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000117;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 430354 430695 . + . ID=Phyra77448;Parent=Phyra77448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 430354 430695 . + 0 ID=Phyra77448;Parent=Phyra77448;rank=1 scaffold_24 . exon 430354 430695 . + . ID=Phyra77448.1;Parent=Phyra77448;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 431513 432250 . + . ID=Phyra77449;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000118;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 431513 432250 . + . ID=Phyra77449;Parent=Phyra77449;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 431513 432250 . + 0 ID=Phyra77449;Parent=Phyra77449;rank=1 scaffold_24 . exon 431513 432250 . + . ID=Phyra77449.1;Parent=Phyra77449;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 432623 434458 . + . ID=Phyra77450;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000119;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 432623 434458 . + . ID=Phyra77450;Parent=Phyra77450;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 432623 434458 . + 0 ID=Phyra77450;Parent=Phyra77450;rank=1 scaffold_24 . exon 432623 434458 . + . ID=Phyra77450.1;Parent=Phyra77450;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 435129 436268 . - . ID=Phyra77451;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000120;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 435129 436268 . - . ID=Phyra77451;Parent=Phyra77451;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 435129 435643 . - 0 ID=Phyra77451;Parent=Phyra77451;rank=2 scaffold_24 . exon 435129 435643 . - . ID=Phyra77451.2;Parent=Phyra77451;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 435950 436268 . - 0 ID=Phyra77451;Parent=Phyra77451;rank=1 scaffold_24 . exon 435950 436268 . - . ID=Phyra77451.1;Parent=Phyra77451;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . repeat_region 438880 438957 . ? . description=trf scaffold_24 . repeat_region 439276 439328 . ? . description=trf scaffold_24 . repeat_region 441201 441272 . ? . description=trf scaffold_24 ensembl protein_coding_gene 438252 438992 . + . ID=Phyra77452;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000121;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 438252 438992 . + . ID=Phyra77452;Parent=Phyra77452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 438252 438483 . + 0 ID=Phyra77452;Parent=Phyra77452;rank=1 scaffold_24 . exon 438252 438483 . + . ID=Phyra77452.1;Parent=Phyra77452;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 438553 438992 . + 0 ID=Phyra77452;Parent=Phyra77452;rank=2 scaffold_24 . exon 438553 438992 . + . ID=Phyra77452.2;Parent=Phyra77452;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . repeat_region 448232 448245 . ? . description=dust scaffold_24 . repeat_region 448266 448273 . ? . description=dust scaffold_24 . biological_region 448931 448933 0.999 - . logic_name=eponine scaffold_24 . repeat_region 449046 449095 . ? . description=dust scaffold_24 . repeat_region 452720 452772 . ? . description=dust scaffold_24 . repeat_region 453258 453307 . ? . description=dust scaffold_24 . repeat_region 454765 454774 . ? . description=dust scaffold_24 ensembl protein_coding_gene 449559 452367 . - . ID=Phyra77453;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000122;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 449559 452367 . - . ID=Phyra77453;Parent=Phyra77453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 449559 449664 . - 0 ID=Phyra77453;Parent=Phyra77453;rank=8 scaffold_24 . exon 449559 449664 . - . ID=Phyra77453.8;Parent=Phyra77453;constitutive=1;ensembl_phase=2;rank=8 scaffold_24 . CDS 449730 450158 . - 0 ID=Phyra77453;Parent=Phyra77453;rank=7 scaffold_24 . exon 449730 450158 . - . ID=Phyra77453.7;Parent=Phyra77453;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_24 . CDS 450368 451397 . - 0 ID=Phyra77453;Parent=Phyra77453;rank=6 scaffold_24 . exon 450368 451397 . - . ID=Phyra77453.6;Parent=Phyra77453;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_24 . CDS 451468 451545 . - 0 ID=Phyra77453;Parent=Phyra77453;rank=5 scaffold_24 . exon 451468 451545 . - . ID=Phyra77453.5;Parent=Phyra77453;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_24 . CDS 451699 451821 . - 0 ID=Phyra77453;Parent=Phyra77453;rank=4 scaffold_24 . exon 451699 451821 . - . ID=Phyra77453.4;Parent=Phyra77453;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_24 . CDS 451885 451980 . - 0 ID=Phyra77453;Parent=Phyra77453;rank=3 scaffold_24 . exon 451885 451980 . - . ID=Phyra77453.3;Parent=Phyra77453;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 452041 452116 . - 0 ID=Phyra77453;Parent=Phyra77453;rank=2 scaffold_24 . exon 452041 452116 . - . ID=Phyra77453.2;Parent=Phyra77453;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_24 . CDS 452176 452367 . - 0 ID=Phyra77453;Parent=Phyra77453;rank=1 scaffold_24 . exon 452176 452367 . - . ID=Phyra77453.1;Parent=Phyra77453;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 453739 456806 . - . ID=Phyra77454;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000123;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 453739 456806 . - . ID=Phyra77454;Parent=Phyra77454;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 453739 454093 . - 0 ID=Phyra77454;Parent=Phyra77454;rank=8 scaffold_24 . exon 453739 454093 . - . ID=Phyra77454.8;Parent=Phyra77454;constitutive=1;ensembl_phase=2;rank=8 scaffold_24 . CDS 454159 454588 . - 0 ID=Phyra77454;Parent=Phyra77454;rank=7 scaffold_24 . exon 454159 454588 . - . ID=Phyra77454.7;Parent=Phyra77454;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_24 . CDS 454862 455836 . - 0 ID=Phyra77454;Parent=Phyra77454;rank=6 scaffold_24 . exon 454862 455836 . - . ID=Phyra77454.6;Parent=Phyra77454;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_24 . CDS 455907 456071 . - 0 ID=Phyra77454;Parent=Phyra77454;rank=5 scaffold_24 . exon 455907 456071 . - . ID=Phyra77454.5;Parent=Phyra77454;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_24 . CDS 456138 456260 . - 0 ID=Phyra77454;Parent=Phyra77454;rank=4 scaffold_24 . exon 456138 456260 . - . ID=Phyra77454.4;Parent=Phyra77454;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_24 . CDS 456324 456419 . - 0 ID=Phyra77454;Parent=Phyra77454;rank=3 scaffold_24 . CDS 456480 456555 . - 0 ID=Phyra77454;Parent=Phyra77454;rank=2 scaffold_24 . CDS 456615 456806 . - 0 ID=Phyra77454;Parent=Phyra77454;rank=1 scaffold_24 . exon 456324 456419 . - . ID=Phyra77454.3;Parent=Phyra77454;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_24 . exon 456480 456555 . - . ID=Phyra77454.2;Parent=Phyra77454;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_24 . exon 456615 456806 . - . ID=Phyra77454.1;Parent=Phyra77454;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 459261 461532 . + . ID=Phyra77455;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000124;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 459261 461532 . + . ID=Phyra77455;Parent=Phyra77455;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 459261 459456 . + 0 ID=Phyra77455;Parent=Phyra77455;rank=1 scaffold_24 . exon 459261 459456 . + . ID=Phyra77455.1;Parent=Phyra77455;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 459605 461532 . + 0 ID=Phyra77455;Parent=Phyra77455;rank=2 scaffold_24 . exon 459605 461532 . + . ID=Phyra77455.2;Parent=Phyra77455;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 ensembl protein_coding_gene 463545 466945 . - . ID=Phyra77456;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000125;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 463545 466945 . - . ID=Phyra77456;Parent=Phyra77456;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 463545 463614 . - 0 ID=Phyra77456;Parent=Phyra77456;rank=3 scaffold_24 . exon 463545 463614 . - . ID=Phyra77456.3;Parent=Phyra77456;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 . CDS 463779 464257 . - 0 ID=Phyra77456;Parent=Phyra77456;rank=2 scaffold_24 . exon 463779 464257 . - . ID=Phyra77456.2;Parent=Phyra77456;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_24 . CDS 464291 466945 . - 0 ID=Phyra77456;Parent=Phyra77456;rank=1 scaffold_24 . exon 464291 466945 . - . ID=Phyra77456.1;Parent=Phyra77456;constitutive=1;rank=1 scaffold_24 . biological_region 469886 469888 0.999 - . logic_name=eponine scaffold_24 . repeat_region 470504 470553 . ? . description=trf scaffold_24 . repeat_region 470564 470613 . ? . description=trf scaffold_24 . repeat_region 471654 472215 . ? . description=trf scaffold_24 . biological_region 472274 472274 0.999 + . logic_name=eponine scaffold_24 . biological_region 475557 475557 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 474221 479424 . - . ID=Phyra77459;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000128;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 474221 479424 . - . ID=Phyra77459;Parent=Phyra77459;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 474221 476384 . - 0 ID=Phyra77459;Parent=Phyra77459;rank=2 scaffold_24 . exon 474221 476384 . - . ID=Phyra77459.2;Parent=Phyra77459;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 476453 479424 . - 0 ID=Phyra77459;Parent=Phyra77459;rank=1 scaffold_24 ensembl protein_coding_gene 467694 474054 . - . ID=Phyra94809;biotype=protein_coding;external_name=C_scaffold_24000037;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 467694 474054 . - . ID=Phyra94809;Parent=Phyra94809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 467694 468355 . - 0 ID=Phyra94809;Parent=Phyra94809;rank=4 scaffold_24 . exon 467694 468355 . - . ID=Phyra94809.4;Parent=Phyra94809;constitutive=1;ensembl_phase=1;rank=4 scaffold_24 . CDS 468482 469646 . - 0 ID=Phyra94809;Parent=Phyra94809;rank=3 scaffold_24 . exon 468482 469646 . - . ID=Phyra94809.3;Parent=Phyra94809;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_24 . CDS 469674 470088 . - 0 ID=Phyra94809;Parent=Phyra94809;rank=2 scaffold_24 . exon 469674 470088 . - . ID=Phyra94809.2;Parent=Phyra94809;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 470159 474054 . - 0 ID=Phyra94809;Parent=Phyra94809;rank=1 scaffold_24 . exon 470159 474054 . - . ID=Phyra94809.1;Parent=Phyra94809;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 484342 488115 . + . ID=Phyra71523;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_24000014;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 484342 488115 . + . ID=Phyra71523;Parent=Phyra71523;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 484342 487225 . + 0 ID=Phyra71523;Parent=Phyra71523;rank=1 scaffold_24 . exon 484342 487225 . + . ID=Phyra71523.1;Parent=Phyra71523;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 487310 488115 . + 0 ID=Phyra71523;Parent=Phyra71523;rank=2 scaffold_24 . exon 476453 479424 . - . ID=Phyra77459.1;Parent=Phyra77459;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 481304 482119 . + . ID=Phyra77461;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000130;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 481304 482119 . + . ID=Phyra77461;Parent=Phyra77461;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 481304 482119 . + 0 ID=Phyra77461;Parent=Phyra77461;rank=1 scaffold_24 . exon 481304 482119 . + . ID=Phyra77461.1;Parent=Phyra77461;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 482473 483459 . - . ID=Phyra77462;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000131;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 482473 483459 . - . ID=Phyra77462;Parent=Phyra77462;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 482473 483459 . - 0 ID=Phyra77462;Parent=Phyra77462;rank=1 scaffold_24 . exon 482473 483459 . - . ID=Phyra77462.1;Parent=Phyra77462;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 479653 480417 . - . ID=Phyra94811;biotype=protein_coding;external_name=C_scaffold_24000039;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 479653 480417 . - . ID=Phyra94811;Parent=Phyra94811;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 479653 480417 . - 0 ID=Phyra94811;Parent=Phyra94811;rank=1 scaffold_24 . exon 479653 480417 . - . ID=Phyra94811.1;Parent=Phyra94811;constitutive=1;rank=1 scaffold_24 . repeat_region 488265 488272 . ? . description=dust scaffold_24 . repeat_region 489922 489975 . ? . description=trf scaffold_24 . repeat_region 490173 490192 . ? . description=trf scaffold_24 . exon 487310 488115 . + . ID=Phyra71523.2;Parent=Phyra71523;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 ensembl protein_coding_gene 488542 490422 . + . ID=Phyra77464;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000133;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 488542 490422 . + . ID=Phyra77464;Parent=Phyra77464;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 488542 490422 . + 0 ID=Phyra77464;Parent=Phyra77464;rank=1 scaffold_24 . exon 488542 490422 . + . ID=Phyra77464.1;Parent=Phyra77464;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 491584 495687 . + . ID=Phyra77465;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000134;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 491584 495687 . + . ID=Phyra77465;Parent=Phyra77465;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 491584 495687 . + 0 ID=Phyra77465;Parent=Phyra77465;rank=1 scaffold_24 . exon 491584 495687 . + . ID=Phyra77465.1;Parent=Phyra77465;constitutive=1;rank=1 scaffold_24 . repeat_region 511436 511444 . ? . description=dust scaffold_24 . repeat_region 512051 512058 . ? . description=dust scaffold_24 . repeat_region 512503 512511 . ? . description=dust scaffold_24 . repeat_region 512864 512877 . ? . description=dust scaffold_24 ensembl protein_coding_gene 515369 518712 . + . ID=Phyra77466;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000135;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 515369 518712 . + . ID=Phyra77466;Parent=Phyra77466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 515369 515739 . + 0 ID=Phyra77466;Parent=Phyra77466;rank=1 scaffold_24 . exon 515369 515739 . + . ID=Phyra77466.1;Parent=Phyra77466;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 516075 518712 . + 0 ID=Phyra77466;Parent=Phyra77466;rank=2 scaffold_24 . biological_region 516175 516180 0.999 + . logic_name=eponine scaffold_24 . biological_region 516245 516246 0.999 - . logic_name=eponine scaffold_24 . biological_region 516264 516273 0.999 - . logic_name=eponine scaffold_24 . biological_region 518482 518485 0.999 + . logic_name=eponine scaffold_24 . biological_region 520202 520205 0.999 + . logic_name=eponine scaffold_24 . biological_region 520336 520336 0.999 + . logic_name=eponine scaffold_24 . biological_region 521425 521426 0.999 - . logic_name=eponine scaffold_24 . biological_region 525310 525311 0.999 - . logic_name=eponine scaffold_24 . exon 516075 518712 . + . ID=Phyra77466.2;Parent=Phyra77466;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 ensembl protein_coding_gene 519961 521138 . - . ID=Phyra77467;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000136;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 519961 521138 . - . ID=Phyra77467;Parent=Phyra77467;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 519961 520547 . - 0 ID=Phyra77467;Parent=Phyra77467;rank=4 scaffold_24 . exon 519961 520547 . - . ID=Phyra77467.4;Parent=Phyra77467;constitutive=1;ensembl_phase=1;rank=4 scaffold_24 . CDS 520611 520684 . - 0 ID=Phyra77467;Parent=Phyra77467;rank=3 scaffold_24 . exon 520611 520684 . - . ID=Phyra77467.3;Parent=Phyra77467;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_24 . CDS 520769 520924 . - 0 ID=Phyra77467;Parent=Phyra77467;rank=2 scaffold_24 . exon 520769 520924 . - . ID=Phyra77467.2;Parent=Phyra77467;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_24 . CDS 521011 521138 . - 0 ID=Phyra77467;Parent=Phyra77467;rank=1 scaffold_24 . exon 521011 521138 . - . ID=Phyra77467.1;Parent=Phyra77467;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 521507 525600 . + . ID=Phyra77468;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000137;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 521507 525600 . + . ID=Phyra77468;Parent=Phyra77468;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 521507 521998 . + 0 ID=Phyra77468;Parent=Phyra77468;rank=1 scaffold_24 . exon 521507 521998 . + . ID=Phyra77468.1;Parent=Phyra77468;constitutive=1;rank=1 scaffold_24 . CDS 522019 525600 . + 0 ID=Phyra77468;Parent=Phyra77468;rank=2 scaffold_24 . exon 522019 525600 . + . ID=Phyra77468.2;Parent=Phyra77468;constitutive=1;rank=2 scaffold_24 . repeat_region 533008 533064 . ? . description=trf scaffold_24 . repeat_region 533247 533290 . ? . description=trf scaffold_24 . repeat_region 535192 535293 . ? . description=trf scaffold_24 . repeat_region 535208 535309 . ? . description=trf scaffold_24 ensembl protein_coding_gene 525688 527039 . - . ID=Phyra77469;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000138;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 525688 527039 . - . ID=Phyra77469;Parent=Phyra77469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 525688 526363 . - 0 ID=Phyra77469;Parent=Phyra77469;rank=2 scaffold_24 . exon 525688 526363 . - . ID=Phyra77469.2;Parent=Phyra77469;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 526426 527039 . - 0 ID=Phyra77469;Parent=Phyra77469;rank=1 scaffold_24 . exon 526426 527039 . - . ID=Phyra77469.1;Parent=Phyra77469;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 529996 532739 . - . ID=Phyra77470;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000139;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 529996 532739 . - . ID=Phyra77470;Parent=Phyra77470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 529996 531535 . - 0 ID=Phyra77470;Parent=Phyra77470;rank=6 scaffold_24 . exon 529996 531535 . - . ID=Phyra77470.6;Parent=Phyra77470;constitutive=1;ensembl_phase=2;rank=6 scaffold_24 . CDS 531608 531676 . - 0 ID=Phyra77470;Parent=Phyra77470;rank=5 scaffold_24 . exon 531608 531676 . - . ID=Phyra77470.5;Parent=Phyra77470;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_24 . CDS 531756 531815 . - 0 ID=Phyra77470;Parent=Phyra77470;rank=4 scaffold_24 . exon 531756 531815 . - . ID=Phyra77470.4;Parent=Phyra77470;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_24 . CDS 531872 531946 . - 0 ID=Phyra77470;Parent=Phyra77470;rank=3 scaffold_24 . exon 531872 531946 . - . ID=Phyra77470.3;Parent=Phyra77470;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_24 . CDS 532010 532258 . - 0 ID=Phyra77470;Parent=Phyra77470;rank=2 scaffold_24 . exon 532010 532258 . - . ID=Phyra77470.2;Parent=Phyra77470;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_24 . CDS 532315 532739 . - 0 ID=Phyra77470;Parent=Phyra77470;rank=1 scaffold_24 . exon 532315 532739 . - . ID=Phyra77470.1;Parent=Phyra77470;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 533381 534472 . + . ID=Phyra77471;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000140;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 533381 534472 . + . ID=Phyra77471;Parent=Phyra77471;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 533381 533994 . + 0 ID=Phyra77471;Parent=Phyra77471;rank=1 scaffold_24 . exon 533381 533994 . + . ID=Phyra77471.1;Parent=Phyra77471;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 534055 534472 . + 0 ID=Phyra77471;Parent=Phyra77471;rank=2 scaffold_24 . exon 534055 534472 . + . ID=Phyra77471.2;Parent=Phyra77471;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 ensembl protein_coding_gene 534678 535990 . - . ID=Phyra77472;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000141;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 534678 535990 . - . ID=Phyra77472;Parent=Phyra77472;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 534678 534774 . - 0 ID=Phyra77472;Parent=Phyra77472;rank=2 scaffold_24 . exon 534678 534774 . - . ID=Phyra77472.2;Parent=Phyra77472;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 534855 535990 . - 0 ID=Phyra77472;Parent=Phyra77472;rank=1 scaffold_24 . exon 534855 535990 . - . ID=Phyra77472.1;Parent=Phyra77472;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . biological_region 538959 538962 0.999 - . logic_name=eponine scaffold_24 . biological_region 542782 542784 0.999 - . logic_name=eponine scaffold_24 . biological_region 545200 545204 0.999 + . logic_name=eponine scaffold_24 ensembl protein_coding_gene 536818 540583 . + . ID=Phyra77473;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000142;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 536818 540583 . + . ID=Phyra77473;Parent=Phyra77473;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 536818 536855 . + 0 ID=Phyra77473;Parent=Phyra77473;rank=1 scaffold_24 . exon 536818 536855 . + . ID=Phyra77473.1;Parent=Phyra77473;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 536923 537125 . + 0 ID=Phyra77473;Parent=Phyra77473;rank=2 scaffold_24 . exon 536923 537125 . + . ID=Phyra77473.2;Parent=Phyra77473;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 537198 537689 . + 0 ID=Phyra77473;Parent=Phyra77473;rank=3 scaffold_24 . exon 537198 537689 . + . ID=Phyra77473.3;Parent=Phyra77473;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 537747 537918 . + 0 ID=Phyra77473;Parent=Phyra77473;rank=4 scaffold_24 . exon 537747 537918 . + . ID=Phyra77473.4;Parent=Phyra77473;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_24 . CDS 537984 538429 . + 0 ID=Phyra77473;Parent=Phyra77473;rank=5 scaffold_24 . exon 537984 538429 . + . ID=Phyra77473.5;Parent=Phyra77473;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_24 . CDS 538500 540583 . + 0 ID=Phyra77473;Parent=Phyra77473;rank=6 scaffold_24 . exon 538500 540583 . + . ID=Phyra77473.6;Parent=Phyra77473;constitutive=1;ensembl_phase=1;rank=6 scaffold_24 ensembl protein_coding_gene 540683 541282 . - . ID=Phyra77474;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000143;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 540683 541282 . - . ID=Phyra77474;Parent=Phyra77474;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 540683 541282 . - 0 ID=Phyra77474;Parent=Phyra77474;rank=1 scaffold_24 . exon 540683 541282 . - . ID=Phyra77474.1;Parent=Phyra77474;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 541990 547730 . - . ID=Phyra77475;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000144;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 541990 547730 . - . ID=Phyra77475;Parent=Phyra77475;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 541990 543469 . - 0 ID=Phyra77475;Parent=Phyra77475;rank=13 scaffold_24 . exon 541990 543469 . - . ID=Phyra77475.13;Parent=Phyra77475;constitutive=1;ensembl_phase=2;rank=13 scaffold_24 . CDS 543684 543716 . - 0 ID=Phyra77475;Parent=Phyra77475;rank=12 scaffold_24 . exon 543684 543716 . - . ID=Phyra77475.12;Parent=Phyra77475;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=12 scaffold_24 . CDS 543806 543871 . - 0 ID=Phyra77475;Parent=Phyra77475;rank=11 scaffold_24 . exon 543806 543871 . - . ID=Phyra77475.11;Parent=Phyra77475;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_24 . CDS 543930 544178 . - 0 ID=Phyra77475;Parent=Phyra77475;rank=10 scaffold_24 . exon 543930 544178 . - . ID=Phyra77475.10;Parent=Phyra77475;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_24 . CDS 544240 544674 . - 0 ID=Phyra77475;Parent=Phyra77475;rank=9 scaffold_24 . exon 544240 544674 . - . ID=Phyra77475.9;Parent=Phyra77475;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_24 . CDS 544765 544773 . - 0 ID=Phyra77475;Parent=Phyra77475;rank=8 scaffold_24 . exon 544765 544773 . - . ID=Phyra77475.8;Parent=Phyra77475;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_24 . CDS 544796 544810 . - 0 ID=Phyra77475;Parent=Phyra77475;rank=7 scaffold_24 . exon 544796 544810 . - . ID=Phyra77475.7;Parent=Phyra77475;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_24 . CDS 544948 546534 . - 0 ID=Phyra77475;Parent=Phyra77475;rank=6 scaffold_24 . exon 544948 546534 . - . ID=Phyra77475.6;Parent=Phyra77475;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_24 . CDS 546595 546655 . - 0 ID=Phyra77475;Parent=Phyra77475;rank=5 scaffold_24 . CDS 546706 546794 . - 0 ID=Phyra77475;Parent=Phyra77475;rank=4 scaffold_24 . CDS 546865 546930 . - 0 ID=Phyra77475;Parent=Phyra77475;rank=3 scaffold_24 . CDS 547010 547258 . - 0 ID=Phyra77475;Parent=Phyra77475;rank=2 scaffold_24 . CDS 547321 547730 . - 0 ID=Phyra77475;Parent=Phyra77475;rank=1 scaffold_24 . repeat_region 545851 545940 . ? . description=trf scaffold_24 . repeat_region 555295 555306 . ? . description=dust scaffold_24 ensembl protein_coding_gene 551548 553059 . - . ID=Phyra71524;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_24000015;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 551548 553059 . - . ID=Phyra71524;Parent=Phyra71524;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 551548 553059 . - 0 ID=Phyra71524;Parent=Phyra71524;rank=1 scaffold_24 . exon 551548 553059 . - . ID=Phyra71524.1;Parent=Phyra71524;constitutive=1;rank=1 scaffold_24 . exon 546595 546655 . - . ID=Phyra77475.5;Parent=Phyra77475;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_24 . exon 546706 546794 . - . ID=Phyra77475.4;Parent=Phyra77475;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_24 . exon 546865 546930 . - . ID=Phyra77475.3;Parent=Phyra77475;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_24 . exon 547010 547258 . - . ID=Phyra77475.2;Parent=Phyra77475;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_24 . exon 547321 547730 . - . ID=Phyra77475.1;Parent=Phyra77475;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 548123 550771 . - . ID=Phyra77476;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000145;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 548123 550771 . - . ID=Phyra77476;Parent=Phyra77476;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 548123 549641 . - 0 ID=Phyra77476;Parent=Phyra77476;rank=5 scaffold_24 . exon 548123 549641 . - . ID=Phyra77476.5;Parent=Phyra77476;constitutive=1;ensembl_phase=2;rank=5 scaffold_24 . CDS 549714 549842 . - 0 ID=Phyra77476;Parent=Phyra77476;rank=4 scaffold_24 . exon 549714 549842 . - . ID=Phyra77476.4;Parent=Phyra77476;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_24 . CDS 549912 549977 . - 0 ID=Phyra77476;Parent=Phyra77476;rank=3 scaffold_24 . exon 549912 549977 . - . ID=Phyra77476.3;Parent=Phyra77476;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_24 . CDS 550042 550287 . - 0 ID=Phyra77476;Parent=Phyra77476;rank=2 scaffold_24 . exon 550042 550287 . - . ID=Phyra77476.2;Parent=Phyra77476;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_24 . CDS 550347 550771 . - 0 ID=Phyra77476;Parent=Phyra77476;rank=1 scaffold_24 . exon 550347 550771 . - . ID=Phyra77476.1;Parent=Phyra77476;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . biological_region 557210 557215 0.999 + . logic_name=eponine scaffold_24 . biological_region 559963 559965 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 555955 557385 . - . ID=Phyra77478;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000147;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 555955 557385 . - . ID=Phyra77478;Parent=Phyra77478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 555955 557385 . - 0 ID=Phyra77478;Parent=Phyra77478;rank=1 scaffold_24 . exon 555955 557385 . - . ID=Phyra77478.1;Parent=Phyra77478;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 559140 560237 . - . ID=Phyra77479;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_24000148;logic_name=jgi_phyra1 scaffold_24 ensembl transcript 559140 560237 . - . ID=Phyra77479;Parent=Phyra77479;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_24 . CDS 559140 560237 . - 0 ID=Phyra77479;Parent=Phyra77479;rank=1 scaffold_24 . exon 559140 560237 . - . ID=Phyra77479.1;Parent=Phyra77479;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_22 1 569032 scaffold_22 . biological_region 557 558 0.999 + . logic_name=eponine scaffold_22 . repeat_region 1305 1404 . ? . description=trf scaffold_22 . repeat_region 1652 6884 . ? . description=dust scaffold_22 . repeat_region 7747 7796 . ? . description=dust scaffold_22 . biological_region 9139 9139 0.999 - . logic_name=eponine scaffold_22 ensembl tRNA_gene 1569 1642 . + . ID=EPrPRAG00000000011;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_22 ensembl transcript 1569 1642 . + . ID=EPrPRAT00000000011;Parent=EPrPRAG00000000011;biotype=tRNA;logic_name=ncrna_eg scaffold_22 . exon 1569 1642 . + . ID=EPrPRAE00000000011;Parent=EPrPRAT00000000011;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 42 436 . + . ID=Phyra77030;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000001;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 42 436 . + . ID=Phyra77030;Parent=Phyra77030;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 42 158 . + 0 ID=Phyra77030;Parent=Phyra77030;rank=1 scaffold_22 . exon 42 158 . + . ID=Phyra77030.1;Parent=Phyra77030;constitutive=1;rank=1 scaffold_22 . CDS 224 436 . + 0 ID=Phyra77030;Parent=Phyra77030;rank=2 scaffold_22 . exon 224 436 . + . ID=Phyra77030.2;Parent=Phyra77030;constitutive=1;rank=2 scaffold_22 ensembl protein_coding_gene 507 1244 . - . ID=Phyra77031;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000002;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 507 1244 . - . ID=Phyra77031;Parent=Phyra77031;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 507 1244 . - 0 ID=Phyra77031;Parent=Phyra77031;rank=1 scaffold_22 . exon 507 1244 . - . ID=Phyra77031.1;Parent=Phyra77031;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 8468 13099 . - . ID=Phyra77032;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000003;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 8468 13099 . - . ID=Phyra77032;Parent=Phyra77032;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 8468 8479 . - 0 ID=Phyra77032;Parent=Phyra77032;rank=9 scaffold_22 . exon 8468 8479 . - . ID=Phyra77032.9;Parent=Phyra77032;constitutive=1;rank=9 scaffold_22 . CDS 8531 8542 . - 0 ID=Phyra77032;Parent=Phyra77032;rank=8 scaffold_22 . exon 8531 8542 . - . ID=Phyra77032.8;Parent=Phyra77032;constitutive=1;rank=8 scaffold_22 . CDS 8743 9001 . - 0 ID=Phyra77032;Parent=Phyra77032;rank=7 scaffold_22 . exon 8743 9001 . - . ID=Phyra77032.7;Parent=Phyra77032;constitutive=1;ensembl_phase=2;rank=7 scaffold_22 . CDS 9065 9208 . - 0 ID=Phyra77032;Parent=Phyra77032;rank=6 scaffold_22 . exon 9065 9208 . - . ID=Phyra77032.6;Parent=Phyra77032;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_22 . CDS 9359 10994 . - 0 ID=Phyra77032;Parent=Phyra77032;rank=5 scaffold_22 . exon 9359 10994 . - . ID=Phyra77032.5;Parent=Phyra77032;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_22 . CDS 11081 11344 . - 0 ID=Phyra77032;Parent=Phyra77032;rank=4 scaffold_22 . CDS 11458 12378 . - 0 ID=Phyra77032;Parent=Phyra77032;rank=3 scaffold_22 . CDS 12451 12687 . - 0 ID=Phyra77032;Parent=Phyra77032;rank=2 scaffold_22 . CDS 12787 13099 . - 0 ID=Phyra77032;Parent=Phyra77032;rank=1 scaffold_22 . exon 11081 11344 . - . ID=Phyra77032.4;Parent=Phyra77032;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_22 . exon 11458 12378 . - . ID=Phyra77032.3;Parent=Phyra77032;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_22 . exon 12451 12687 . - . ID=Phyra77032.2;Parent=Phyra77032;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_22 . exon 12787 13099 . - . ID=Phyra77032.1;Parent=Phyra77032;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 15382 19500 . - . ID=Phyra77033;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000004;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 15382 19500 . - . ID=Phyra77033;Parent=Phyra77033;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 15382 19500 . - 0 ID=Phyra77033;Parent=Phyra77033;rank=1 scaffold_22 . exon 15382 19500 . - . ID=Phyra77033.1;Parent=Phyra77033;constitutive=1;rank=1 scaffold_22 . repeat_region 21872 25166 . ? . description=dust scaffold_22 . repeat_region 25367 25376 . ? . description=dust scaffold_22 . repeat_region 26853 33419 . ? . description=dust scaffold_22 ensembl protein_coding_gene 25862 26469 . + . ID=Phyra77034;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000005;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 25862 26469 . + . ID=Phyra77034;Parent=Phyra77034;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 25862 26005 . + 0 ID=Phyra77034;Parent=Phyra77034;rank=1 scaffold_22 . exon 25862 26005 . + . ID=Phyra77034.1;Parent=Phyra77034;constitutive=1;rank=1 scaffold_22 . CDS 26128 26469 . + 0 ID=Phyra77034;Parent=Phyra77034;rank=2 scaffold_22 . exon 26128 26469 . + . ID=Phyra77034.2;Parent=Phyra77034;constitutive=1;rank=2 scaffold_22 . biological_region 33974 33977 0.999 - . logic_name=eponine scaffold_22 . biological_region 34001 34004 0.999 - . logic_name=eponine scaffold_22 . biological_region 34035 34042 0.999 - . logic_name=eponine scaffold_22 . biological_region 34054 34062 0.999 + . logic_name=eponine scaffold_22 . biological_region 34106 34110 0.999 - . logic_name=eponine scaffold_22 . repeat_region 34408 34430 . ? . description=trf scaffold_22 . repeat_region 39920 39951 . ? . description=trf scaffold_22 ensembl protein_coding_gene 41698 43126 . - . ID=Phyra77035;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000006;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 41698 43126 . - . ID=Phyra77035;Parent=Phyra77035;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 41698 41715 . - 0 ID=Phyra77035;Parent=Phyra77035;rank=3 scaffold_22 . exon 41698 41715 . - . ID=Phyra77035.3;Parent=Phyra77035;constitutive=1;rank=3 scaffold_22 . CDS 41918 42183 . - 0 ID=Phyra77035;Parent=Phyra77035;rank=2 scaffold_22 . exon 41918 42183 . - . ID=Phyra77035.2;Parent=Phyra77035;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 42310 43126 . - 0 ID=Phyra77035;Parent=Phyra77035;rank=1 scaffold_22 . exon 42310 43126 . - . ID=Phyra77035.1;Parent=Phyra77035;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 44814 46874 . - . ID=Phyra77036;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000007;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 44814 46874 . - . ID=Phyra77036;Parent=Phyra77036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 44814 46874 . - 0 ID=Phyra77036;Parent=Phyra77036;rank=1 scaffold_22 . exon 44814 46874 . - . ID=Phyra77036.1;Parent=Phyra77036;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 49525 50932 . - . ID=Phyra77037;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000008;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 49525 50932 . - . ID=Phyra77037;Parent=Phyra77037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 49525 49573 . - 0 ID=Phyra77037;Parent=Phyra77037;rank=3 scaffold_22 . exon 49525 49573 . - . ID=Phyra77037.3;Parent=Phyra77037;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 49596 50593 . - 0 ID=Phyra77037;Parent=Phyra77037;rank=2 scaffold_22 . exon 49596 50593 . - . ID=Phyra77037.2;Parent=Phyra77037;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 50765 50932 . - 0 ID=Phyra77037;Parent=Phyra77037;rank=1 scaffold_22 . biological_region 57060 57061 0.999 + . logic_name=eponine scaffold_22 . repeat_region 58371 58962 . ? . description=trf scaffold_22 . biological_region 59672 59675 0.999 - . logic_name=eponine scaffold_22 . exon 50765 50932 . - . ID=Phyra77037.1;Parent=Phyra77037;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 55066 56568 . + . ID=Phyra77038;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000009;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 55066 56568 . + . ID=Phyra77038;Parent=Phyra77038;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 55066 56568 . + 0 ID=Phyra77038;Parent=Phyra77038;rank=1 scaffold_22 . exon 55066 56568 . + . ID=Phyra77038.1;Parent=Phyra77038;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 58121 58971 . - . ID=Phyra77039;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000010;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 58121 58971 . - . ID=Phyra77039;Parent=Phyra77039;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 58121 58138 . - 0 ID=Phyra77039;Parent=Phyra77039;rank=3 scaffold_22 . exon 58121 58138 . - . ID=Phyra77039.3;Parent=Phyra77039;constitutive=1;rank=3 scaffold_22 . CDS 58168 58229 . - 0 ID=Phyra77039;Parent=Phyra77039;rank=2 scaffold_22 . exon 58168 58229 . - . ID=Phyra77039.2;Parent=Phyra77039;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 58332 58971 . - 0 ID=Phyra77039;Parent=Phyra77039;rank=1 scaffold_22 . exon 58332 58971 . - . ID=Phyra77039.1;Parent=Phyra77039;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 63528 67197 . + . ID=Phyra77040;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000011;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 63528 67197 . + . ID=Phyra77040;Parent=Phyra77040;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 63528 64914 . + 0 ID=Phyra77040;Parent=Phyra77040;rank=1 scaffold_22 . exon 63528 64914 . + . ID=Phyra77040.1;Parent=Phyra77040;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 65062 65938 . + 0 ID=Phyra77040;Parent=Phyra77040;rank=2 scaffold_22 . exon 65062 65938 . + . ID=Phyra77040.2;Parent=Phyra77040;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_22 . CDS 66079 66100 . + 0 ID=Phyra77040;Parent=Phyra77040;rank=3 scaffold_22 . exon 66079 66100 . + . ID=Phyra77040.3;Parent=Phyra77040;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 66274 66745 . + 0 ID=Phyra77040;Parent=Phyra77040;rank=4 scaffold_22 . exon 66274 66745 . + . ID=Phyra77040.4;Parent=Phyra77040;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_22 . CDS 66775 67025 . + 0 ID=Phyra77040;Parent=Phyra77040;rank=5 scaffold_22 . exon 66775 67025 . + . ID=Phyra77040.5;Parent=Phyra77040;constitutive=1;ensembl_phase=1;rank=5 scaffold_22 . CDS 67189 67197 . + 0 ID=Phyra77040;Parent=Phyra77040;rank=6 scaffold_22 . exon 67189 67197 . + . ID=Phyra77040.6;Parent=Phyra77040;constitutive=1;rank=6 scaffold_22 . repeat_region 72822 72832 . ? . description=dust scaffold_22 . biological_region 73052 73053 0.999 + . logic_name=eponine scaffold_22 . repeat_region 73894 73910 . ? . description=dust scaffold_22 . repeat_region 77054 77163 . ? . description=trf scaffold_22 . repeat_region 77054 77165 . ? . description=trf scaffold_22 . repeat_region 77054 77172 . ? . description=trf scaffold_22 . repeat_region 77213 77292 . ? . description=trf scaffold_22 . biological_region 77483 77486 0.999 - . logic_name=eponine scaffold_22 . biological_region 77694 77698 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 71202 72692 . - . ID=Phyra77041;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000012;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 71202 72692 . - . ID=Phyra77041;Parent=Phyra77041;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 71202 72692 . - 0 ID=Phyra77041;Parent=Phyra77041;rank=1 scaffold_22 . exon 71202 72692 . - . ID=Phyra77041.1;Parent=Phyra77041;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 75058 77547 . - . ID=Phyra77042;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000013;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 75058 77547 . - . ID=Phyra77042;Parent=Phyra77042;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 75058 76711 . - 0 ID=Phyra77042;Parent=Phyra77042;rank=2 scaffold_22 . exon 75058 76711 . - . ID=Phyra77042.2;Parent=Phyra77042;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 77048 77547 . - 0 ID=Phyra77042;Parent=Phyra77042;rank=1 scaffold_22 . exon 77048 77547 . - . ID=Phyra77042.1;Parent=Phyra77042;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 78312 83066 . - . ID=Phyra77043;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000014;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 78312 83066 . - . ID=Phyra77043;Parent=Phyra77043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 78312 79025 . - 0 ID=Phyra77043;Parent=Phyra77043;rank=7 scaffold_22 . exon 78312 79025 . - . ID=Phyra77043.7;Parent=Phyra77043;constitutive=1;rank=7 scaffold_22 . CDS 79085 79832 . - 0 ID=Phyra77043;Parent=Phyra77043;rank=6 scaffold_22 . exon 79085 79832 . - . ID=Phyra77043.6;Parent=Phyra77043;constitutive=1;ensembl_phase=2;rank=6 scaffold_22 . CDS 79898 80613 . - 0 ID=Phyra77043;Parent=Phyra77043;rank=5 scaffold_22 . CDS 80680 81465 . - 0 ID=Phyra77043;Parent=Phyra77043;rank=4 scaffold_22 . CDS 81637 82039 . - 0 ID=Phyra77043;Parent=Phyra77043;rank=3 scaffold_22 . CDS 82165 82265 . - 0 ID=Phyra77043;Parent=Phyra77043;rank=2 scaffold_22 . CDS 82335 83066 . - 0 ID=Phyra77043;Parent=Phyra77043;rank=1 scaffold_22 ensembl protein_coding_gene 87508 88001 . - . ID=Phyra44817;biotype=protein_coding;external_name=gwEuk.22.120.1;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 87508 88001 . - . ID=Phyra44817;Parent=Phyra44817;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 87508 87599 . - 0 ID=Phyra44817;Parent=Phyra44817;rank=4 scaffold_22 . exon 87508 87599 . - . ID=Phyra44817.4;Parent=Phyra44817;constitutive=1;ensembl_phase=1;rank=4 scaffold_22 . CDS 87686 87725 . - 0 ID=Phyra44817;Parent=Phyra44817;rank=3 scaffold_22 . exon 87686 87725 . - . ID=Phyra44817.3;Parent=Phyra44817;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_22 . CDS 87812 87869 . - 0 ID=Phyra44817;Parent=Phyra44817;rank=2 scaffold_22 . exon 87812 87869 . - . ID=Phyra44817.2;Parent=Phyra44817;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 87946 88001 . - 0 ID=Phyra44817;Parent=Phyra44817;rank=1 scaffold_22 . exon 87946 88001 . - . ID=Phyra44817.1;Parent=Phyra44817;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 86224 87216 . + . ID=Phyra71478;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_22000001;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 86224 87216 . + . ID=Phyra71478;Parent=Phyra71478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 86224 87216 . + 0 ID=Phyra71478;Parent=Phyra71478;rank=1 scaffold_22 . exon 86224 87216 . + . ID=Phyra71478.1;Parent=Phyra71478;constitutive=1;rank=1 scaffold_22 . exon 79898 80613 . - . ID=Phyra77043.5;Parent=Phyra77043;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_22 . exon 80680 81465 . - . ID=Phyra77043.4;Parent=Phyra77043;constitutive=1;rank=4 scaffold_22 . exon 81637 82039 . - . ID=Phyra77043.3;Parent=Phyra77043;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . exon 82165 82265 . - . ID=Phyra77043.2;Parent=Phyra77043;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . exon 82335 83066 . - . ID=Phyra77043.1;Parent=Phyra77043;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 83823 85352 . - . ID=Phyra77044;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000015;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 83823 85352 . - . ID=Phyra77044;Parent=Phyra77044;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 83823 85352 . - 0 ID=Phyra77044;Parent=Phyra77044;rank=1 scaffold_22 . exon 83823 85352 . - . ID=Phyra77044.1;Parent=Phyra77044;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 88877 90361 . - . ID=Phyra77047;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000018;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 88877 90361 . - . ID=Phyra77047;Parent=Phyra77047;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 88877 90361 . - 0 ID=Phyra77047;Parent=Phyra77047;rank=1 scaffold_22 . exon 88877 90361 . - . ID=Phyra77047.1;Parent=Phyra77047;constitutive=1;rank=1 scaffold_22 . biological_region 90774 90775 0.999 - . logic_name=eponine scaffold_22 . biological_region 91976 91982 0.999 + . logic_name=eponine scaffold_22 . biological_region 94129 94135 0.999 + . logic_name=eponine scaffold_22 . biological_region 95953 95954 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 92520 93464 . - . ID=Phyra44829;biotype=protein_coding;external_name=gwEuk.22.132.1;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 92520 93464 . - . ID=Phyra44829;Parent=Phyra44829;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 92520 93464 . - 0 ID=Phyra44829;Parent=Phyra44829;rank=1 scaffold_22 . exon 92520 93464 . - . ID=Phyra44829.1;Parent=Phyra44829;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 90690 92219 . + . ID=Phyra77048;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000019;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 90690 92219 . + . ID=Phyra77048;Parent=Phyra77048;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 90690 92219 . + 0 ID=Phyra77048;Parent=Phyra77048;rank=1 scaffold_22 . exon 90690 92219 . + . ID=Phyra77048.1;Parent=Phyra77048;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 95007 95885 . - . ID=Phyra77050;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000021;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 95007 95885 . - . ID=Phyra77050;Parent=Phyra77050;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 95007 95241 . - 0 ID=Phyra77050;Parent=Phyra77050;rank=4 scaffold_22 . exon 95007 95241 . - . ID=Phyra77050.4;Parent=Phyra77050;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 95353 95447 . - 0 ID=Phyra77050;Parent=Phyra77050;rank=3 scaffold_22 . exon 95353 95447 . - . ID=Phyra77050.3;Parent=Phyra77050;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_22 . CDS 95493 95780 . - 0 ID=Phyra77050;Parent=Phyra77050;rank=2 scaffold_22 . exon 95493 95780 . - . ID=Phyra77050.2;Parent=Phyra77050;constitutive=1;rank=2 scaffold_22 . CDS 95847 95885 . - 0 ID=Phyra77050;Parent=Phyra77050;rank=1 scaffold_22 . exon 95847 95885 . - . ID=Phyra77050.1;Parent=Phyra77050;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 99427 100413 . - . ID=Phyra77051;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000022;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 99427 100413 . - . ID=Phyra77051;Parent=Phyra77051;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 99427 100413 . - 0 ID=Phyra77051;Parent=Phyra77051;rank=1 scaffold_22 . exon 99427 100413 . - . ID=Phyra77051.1;Parent=Phyra77051;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 106896 107596 . - . ID=Phyra71479;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_22000002;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 106896 107596 . - . ID=Phyra71479;Parent=Phyra71479;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 106896 107009 . - 0 ID=Phyra71479;Parent=Phyra71479;rank=2 scaffold_22 . exon 106896 107009 . - . ID=Phyra71479.2;Parent=Phyra71479;constitutive=1;rank=2 scaffold_22 . CDS 107243 107596 . - 0 ID=Phyra71479;Parent=Phyra71479;rank=1 scaffold_22 . exon 107243 107596 . - . ID=Phyra71479.1;Parent=Phyra71479;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 107791 108813 . + . ID=Phyra77053;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000024;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 107791 108813 . + . ID=Phyra77053;Parent=Phyra77053;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 107791 107881 . + 0 ID=Phyra77053;Parent=Phyra77053;rank=1 scaffold_22 . exon 107791 107881 . + . ID=Phyra77053.1;Parent=Phyra77053;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 107961 108214 . + 0 ID=Phyra77053;Parent=Phyra77053;rank=2 scaffold_22 . exon 107961 108214 . + . ID=Phyra77053.2;Parent=Phyra77053;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 108287 108436 . + 0 ID=Phyra77053;Parent=Phyra77053;rank=3 scaffold_22 . exon 108287 108436 . + . ID=Phyra77053.3;Parent=Phyra77053;constitutive=1;rank=3 scaffold_22 . CDS 108530 108744 . + 0 ID=Phyra77053;Parent=Phyra77053;rank=4 scaffold_22 . exon 108530 108744 . + . ID=Phyra77053.4;Parent=Phyra77053;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_22 . CDS 108795 108813 . + 0 ID=Phyra77053;Parent=Phyra77053;rank=5 scaffold_22 . exon 108795 108813 . + . ID=Phyra77053.5;Parent=Phyra77053;constitutive=1;ensembl_phase=2;rank=5 scaffold_22 ensembl protein_coding_gene 108914 109472 . - . ID=Phyra77054;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000025;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 108914 109472 . - . ID=Phyra77054;Parent=Phyra77054;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 108914 109218 . - 0 ID=Phyra77054;Parent=Phyra77054;rank=3 scaffold_22 . exon 108914 109218 . - . ID=Phyra77054.3;Parent=Phyra77054;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 109287 109356 . - 0 ID=Phyra77054;Parent=Phyra77054;rank=2 scaffold_22 . exon 109287 109356 . - . ID=Phyra77054.2;Parent=Phyra77054;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 . CDS 109407 109472 . - 0 ID=Phyra77054;Parent=Phyra77054;rank=1 scaffold_22 . exon 109407 109472 . - . ID=Phyra77054.1;Parent=Phyra77054;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 109703 111602 . + . ID=Phyra77055;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000026;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 109703 111602 . + . ID=Phyra77055;Parent=Phyra77055;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 109703 110939 . + 0 ID=Phyra77055;Parent=Phyra77055;rank=1 scaffold_22 . exon 109703 110939 . + . ID=Phyra77055.1;Parent=Phyra77055;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 111009 111085 . + 0 ID=Phyra77055;Parent=Phyra77055;rank=2 scaffold_22 . CDS 111160 111336 . + 0 ID=Phyra77055;Parent=Phyra77055;rank=3 scaffold_22 . CDS 111408 111602 . + 0 ID=Phyra77055;Parent=Phyra77055;rank=4 scaffold_22 . biological_region 109973 109973 0.999 + . logic_name=eponine scaffold_22 . repeat_region 110087 110135 . ? . description=dust scaffold_22 . repeat_region 113235 113286 . ? . description=trf scaffold_22 . biological_region 116353 116355 0.999 - . logic_name=eponine scaffold_22 . repeat_region 118673 118680 . ? . description=dust scaffold_22 . repeat_region 119294 119342 . ? . description=trf scaffold_22 . exon 111009 111085 . + . ID=Phyra77055.2;Parent=Phyra77055;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . exon 111160 111336 . + . ID=Phyra77055.3;Parent=Phyra77055;constitutive=1;rank=3 scaffold_22 . exon 111408 111602 . + . ID=Phyra77055.4;Parent=Phyra77055;constitutive=1;rank=4 scaffold_22 ensembl protein_coding_gene 111725 112283 . - . ID=Phyra77056;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000027;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 111725 112283 . - . ID=Phyra77056;Parent=Phyra77056;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 111725 112150 . - 0 ID=Phyra77056;Parent=Phyra77056;rank=2 scaffold_22 . exon 111725 112150 . - . ID=Phyra77056.2;Parent=Phyra77056;constitutive=1;rank=2 scaffold_22 . CDS 112206 112283 . - 0 ID=Phyra77056;Parent=Phyra77056;rank=1 scaffold_22 . exon 112206 112283 . - . ID=Phyra77056.1;Parent=Phyra77056;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 112596 113294 . - . ID=Phyra77057;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000028;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 112596 113294 . - . ID=Phyra77057;Parent=Phyra77057;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 112596 113294 . - 0 ID=Phyra77057;Parent=Phyra77057;rank=1 scaffold_22 . exon 112596 113294 . - . ID=Phyra77057.1;Parent=Phyra77057;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 114384 117858 . + . ID=Phyra94672;biotype=protein_coding;external_name=C_scaffold_22000001;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 114384 117858 . + . ID=Phyra94672;Parent=Phyra94672;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 114384 114527 . + 0 ID=Phyra94672;Parent=Phyra94672;rank=1 scaffold_22 . exon 114384 114527 . + . ID=Phyra94672.1;Parent=Phyra94672;constitutive=1;rank=1 scaffold_22 . CDS 114601 114673 . + 0 ID=Phyra94672;Parent=Phyra94672;rank=2 scaffold_22 . exon 114601 114673 . + . ID=Phyra94672.2;Parent=Phyra94672;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 . CDS 114735 114859 . + 0 ID=Phyra94672;Parent=Phyra94672;rank=3 scaffold_22 . exon 114735 114859 . + . ID=Phyra94672.3;Parent=Phyra94672;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 114947 115033 . + 0 ID=Phyra94672;Parent=Phyra94672;rank=4 scaffold_22 . exon 114947 115033 . + . ID=Phyra94672.4;Parent=Phyra94672;constitutive=1;rank=4 scaffold_22 . CDS 115102 115255 . + 0 ID=Phyra94672;Parent=Phyra94672;rank=5 scaffold_22 . exon 115102 115255 . + . ID=Phyra94672.5;Parent=Phyra94672;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_22 . CDS 115330 115592 . + 0 ID=Phyra94672;Parent=Phyra94672;rank=6 scaffold_22 . exon 115330 115592 . + . ID=Phyra94672.6;Parent=Phyra94672;constitutive=1;ensembl_phase=1;rank=6 scaffold_22 . CDS 115677 115755 . + 0 ID=Phyra94672;Parent=Phyra94672;rank=7 scaffold_22 . exon 115677 115755 . + . ID=Phyra94672.7;Parent=Phyra94672;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_22 . CDS 115826 116013 . + 0 ID=Phyra94672;Parent=Phyra94672;rank=8 scaffold_22 . exon 115826 116013 . + . ID=Phyra94672.8;Parent=Phyra94672;constitutive=1;ensembl_phase=1;rank=8 scaffold_22 . CDS 116597 116816 . + 0 ID=Phyra94672;Parent=Phyra94672;rank=9 scaffold_22 . exon 116597 116816 . + . ID=Phyra94672.9;Parent=Phyra94672;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_22 . CDS 116895 116956 . + 0 ID=Phyra94672;Parent=Phyra94672;rank=10 scaffold_22 . exon 116895 116956 . + . ID=Phyra94672.10;Parent=Phyra94672;constitutive=1;ensembl_phase=1;rank=10 scaffold_22 . CDS 117014 117222 . + 0 ID=Phyra94672;Parent=Phyra94672;rank=11 scaffold_22 . exon 117014 117222 . + . ID=Phyra94672.11;Parent=Phyra94672;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_22 . CDS 117364 117497 . + 0 ID=Phyra94672;Parent=Phyra94672;rank=12 scaffold_22 . exon 117364 117497 . + . ID=Phyra94672.12;Parent=Phyra94672;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_22 . CDS 117654 117767 . + 0 ID=Phyra94672;Parent=Phyra94672;rank=13 scaffold_22 . exon 117654 117767 . + . ID=Phyra94672.13;Parent=Phyra94672;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_22 . CDS 117824 117858 . + 0 ID=Phyra94672;Parent=Phyra94672;rank=14 scaffold_22 . exon 117824 117858 . + . ID=Phyra94672.14;Parent=Phyra94672;constitutive=1;ensembl_phase=1;rank=14 scaffold_22 ensembl protein_coding_gene 127097 127849 . + . ID=Phyra71480;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_22000003;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 127097 127849 . + . ID=Phyra71480;Parent=Phyra71480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 127097 127234 . + 0 ID=Phyra71480;Parent=Phyra71480;rank=1 scaffold_22 . exon 127097 127234 . + . ID=Phyra71480.1;Parent=Phyra71480;constitutive=1;rank=1 scaffold_22 . CDS 127305 127397 . + 0 ID=Phyra71480;Parent=Phyra71480;rank=2 scaffold_22 . exon 127305 127397 . + . ID=Phyra71480.2;Parent=Phyra71480;constitutive=1;rank=2 scaffold_22 . CDS 127467 127535 . + 0 ID=Phyra71480;Parent=Phyra71480;rank=3 scaffold_22 . exon 127467 127535 . + . ID=Phyra71480.3;Parent=Phyra71480;constitutive=1;rank=3 scaffold_22 . CDS 127727 127849 . + 0 ID=Phyra71480;Parent=Phyra71480;rank=4 scaffold_22 . exon 127727 127849 . + . ID=Phyra71480.4;Parent=Phyra71480;constitutive=1;rank=4 scaffold_22 ensembl protein_coding_gene 125490 126924 . - . ID=Phyra77059;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000030;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 125490 126924 . - . ID=Phyra77059;Parent=Phyra77059;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 125490 125509 . - 0 ID=Phyra77059;Parent=Phyra77059;rank=6 scaffold_22 . exon 125490 125509 . - . ID=Phyra77059.6;Parent=Phyra77059;constitutive=1;ensembl_phase=1;rank=6 scaffold_22 . CDS 125533 126001 . - 0 ID=Phyra77059;Parent=Phyra77059;rank=5 scaffold_22 . exon 125533 126001 . - . ID=Phyra77059.5;Parent=Phyra77059;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_22 . CDS 126121 126165 . - 0 ID=Phyra77059;Parent=Phyra77059;rank=4 scaffold_22 . exon 126121 126165 . - . ID=Phyra77059.4;Parent=Phyra77059;constitutive=1;rank=4 scaffold_22 . CDS 126371 126646 . - 0 ID=Phyra77059;Parent=Phyra77059;rank=3 scaffold_22 . exon 126371 126646 . - . ID=Phyra77059.3;Parent=Phyra77059;constitutive=1;rank=3 scaffold_22 . CDS 126717 126760 . - 0 ID=Phyra77059;Parent=Phyra77059;rank=2 scaffold_22 . exon 126717 126760 . - . ID=Phyra77059.2;Parent=Phyra77059;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 126834 126924 . - 0 ID=Phyra77059;Parent=Phyra77059;rank=1 scaffold_22 . exon 126834 126924 . - . ID=Phyra77059.1;Parent=Phyra77059;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 128370 130645 . + . ID=Phyra77061;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000032;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 128370 130645 . + . ID=Phyra77061;Parent=Phyra77061;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . exon 128370 128860 . + . ID=Phyra77061.1;Parent=Phyra77061;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 128371 128860 . + 0 ID=Phyra77061;Parent=Phyra77061;rank=1 scaffold_22 . CDS 128952 130645 . + 0 ID=Phyra77061;Parent=Phyra77061;rank=2 scaffold_22 . exon 128952 130645 . + . ID=Phyra77061.2;Parent=Phyra77061;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . biological_region 130554 130555 0.999 - . logic_name=eponine scaffold_22 . biological_region 131109 131114 0.999 - . logic_name=eponine scaffold_22 . biological_region 131196 131198 0.999 - . logic_name=eponine scaffold_22 . biological_region 131225 131230 0.999 + . logic_name=eponine scaffold_22 . repeat_region 133960 133969 . ? . description=dust scaffold_22 ensembl protein_coding_gene 130940 132133 . + . ID=Phyra71481;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_22000004;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 130940 132133 . + . ID=Phyra71481;Parent=Phyra71481;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 130940 132133 . + 0 ID=Phyra71481;Parent=Phyra71481;rank=1 scaffold_22 . exon 130940 132133 . + . ID=Phyra71481.1;Parent=Phyra71481;constitutive=1;rank=1 scaffold_22 . repeat_region 144549 144570 . ? . description=trf scaffold_22 . repeat_region 149124 149535 . + . description=Gypsy-1-I_PI-int scaffold_22 ensembl protein_coding_gene 145461 150703 . + . ID=Phyra77063;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000034;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 145461 150703 . + . ID=Phyra77063;Parent=Phyra77063;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 145461 145552 . + 0 ID=Phyra77063;Parent=Phyra77063;rank=1 scaffold_22 . exon 145461 145552 . + . ID=Phyra77063.1;Parent=Phyra77063;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 145755 147749 . + 0 ID=Phyra77063;Parent=Phyra77063;rank=2 scaffold_22 . exon 145755 147749 . + . ID=Phyra77063.2;Parent=Phyra77063;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 147769 148204 . + 0 ID=Phyra77063;Parent=Phyra77063;rank=3 scaffold_22 . exon 147769 148204 . + . ID=Phyra77063.3;Parent=Phyra77063;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 148378 150531 . + 0 ID=Phyra77063;Parent=Phyra77063;rank=4 scaffold_22 . exon 148378 150531 . + . ID=Phyra77063.4;Parent=Phyra77063;constitutive=1;rank=4 scaffold_22 . CDS 150656 150703 . + 0 ID=Phyra77063;Parent=Phyra77063;rank=5 scaffold_22 . repeat_region 150352 150364 . ? . description=dust scaffold_22 . repeat_region 154163 154207 . ? . description=dust scaffold_22 . biological_region 154473 154473 0.999 - . logic_name=eponine scaffold_22 . repeat_region 154503 154740 . - . description=GypsyPi-1c_LTR scaffold_22 . exon 150656 150703 . + . ID=Phyra77063.5;Parent=Phyra77063;constitutive=1;rank=5 scaffold_22 ensembl protein_coding_gene 157266 157655 . + . ID=Phyra77064;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000035;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 157266 157655 . + . ID=Phyra77064;Parent=Phyra77064;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 157266 157655 . + 0 ID=Phyra77064;Parent=Phyra77064;rank=1 scaffold_22 . exon 157266 157655 . + . ID=Phyra77064.1;Parent=Phyra77064;constitutive=1;rank=1 scaffold_22 . repeat_region 163378 163789 . + . description=Gypsy-1-I_PI-int scaffold_22 . repeat_region 164786 164817 . ? . description=trf scaffold_22 ensembl protein_coding_gene 160930 164773 . + . ID=Phyra77065;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000036;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 160930 164773 . + . ID=Phyra77065;Parent=Phyra77065;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 160930 161110 . + 0 ID=Phyra77065;Parent=Phyra77065;rank=1 scaffold_22 . exon 160930 161110 . + . ID=Phyra77065.1;Parent=Phyra77065;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 161170 161256 . + 0 ID=Phyra77065;Parent=Phyra77065;rank=2 scaffold_22 . exon 161170 161256 . + . ID=Phyra77065.2;Parent=Phyra77065;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 161323 161385 . + 0 ID=Phyra77065;Parent=Phyra77065;rank=3 scaffold_22 . exon 161323 161385 . + . ID=Phyra77065.3;Parent=Phyra77065;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 161640 161718 . + 0 ID=Phyra77065;Parent=Phyra77065;rank=4 scaffold_22 . exon 161640 161718 . + . ID=Phyra77065.4;Parent=Phyra77065;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_22 . CDS 161805 161889 . + 0 ID=Phyra77065;Parent=Phyra77065;rank=5 scaffold_22 . exon 161805 161889 . + . ID=Phyra77065.5;Parent=Phyra77065;constitutive=1;ensembl_phase=2;rank=5 scaffold_22 . CDS 161993 164773 . + 0 ID=Phyra77065;Parent=Phyra77065;rank=6 scaffold_22 . exon 161993 164773 . + . ID=Phyra77065.6;Parent=Phyra77065;constitutive=1;rank=6 scaffold_22 . repeat_region 171413 171462 . ? . description=dust scaffold_22 . repeat_region 176044 176051 . ? . description=dust scaffold_22 ensembl protein_coding_gene 170438 171718 . - . ID=Phyra77066;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000037;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 170438 171718 . - . ID=Phyra77066;Parent=Phyra77066;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 170438 170773 . - 0 ID=Phyra77066;Parent=Phyra77066;rank=3 scaffold_22 . exon 170438 170773 . - . ID=Phyra77066.3;Parent=Phyra77066;constitutive=1;rank=3 scaffold_22 . CDS 171058 171153 . - 0 ID=Phyra77066;Parent=Phyra77066;rank=2 scaffold_22 . exon 171058 171153 . - . ID=Phyra77066.2;Parent=Phyra77066;constitutive=1;rank=2 scaffold_22 . CDS 171557 171718 . - 0 ID=Phyra77066;Parent=Phyra77066;rank=1 scaffold_22 . exon 171557 171718 . - . ID=Phyra77066.1;Parent=Phyra77066;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 177306 181150 . + . ID=Phyra77067;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000038;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 177306 181150 . + . ID=Phyra77067;Parent=Phyra77067;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 177306 178418 . + 0 ID=Phyra77067;Parent=Phyra77067;rank=1 scaffold_22 . exon 177306 178418 . + . ID=Phyra77067.1;Parent=Phyra77067;constitutive=1;rank=1 scaffold_22 . CDS 178522 178779 . + 0 ID=Phyra77067;Parent=Phyra77067;rank=2 scaffold_22 . exon 178522 178779 . + . ID=Phyra77067.2;Parent=Phyra77067;constitutive=1;rank=2 scaffold_22 . CDS 178869 179034 . + 0 ID=Phyra77067;Parent=Phyra77067;rank=3 scaffold_22 . exon 178869 179034 . + . ID=Phyra77067.3;Parent=Phyra77067;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_22 . CDS 179083 179376 . + 0 ID=Phyra77067;Parent=Phyra77067;rank=4 scaffold_22 . exon 179083 179376 . + . ID=Phyra77067.4;Parent=Phyra77067;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_22 . CDS 179488 179565 . + 0 ID=Phyra77067;Parent=Phyra77067;rank=5 scaffold_22 . exon 179488 179565 . + . ID=Phyra77067.5;Parent=Phyra77067;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_22 . CDS 179590 179795 . + 0 ID=Phyra77067;Parent=Phyra77067;rank=6 scaffold_22 . exon 179590 179795 . + . ID=Phyra77067.6;Parent=Phyra77067;constitutive=1;ensembl_phase=1;rank=6 scaffold_22 . CDS 180200 181150 . + 0 ID=Phyra77067;Parent=Phyra77067;rank=7 scaffold_22 . repeat_region 182184 182488 . - . description=GypsyPi-1c_LTR scaffold_22 . repeat_region 183383 183407 . ? . description=trf scaffold_22 . repeat_region 183745 183854 . ? . description=trf scaffold_22 . repeat_region 183747 183805 . ? . description=trf scaffold_22 . repeat_region 183750 183770 . ? . description=trf scaffold_22 . biological_region 183846 183851 0.999 - . logic_name=eponine scaffold_22 . biological_region 184475 184483 0.999 + . logic_name=eponine scaffold_22 . repeat_region 184506 184563 . ? . description=trf scaffold_22 . biological_region 184625 184630 0.999 - . logic_name=eponine scaffold_22 . exon 180200 181150 . + . ID=Phyra77067.7;Parent=Phyra77067;constitutive=1;rank=7 scaffold_22 ensembl protein_coding_gene 185928 190630 . + . ID=Phyra94673;biotype=protein_coding;external_name=C_scaffold_22000002;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 185928 190630 . + . ID=Phyra94673;Parent=Phyra94673;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 185928 185997 . + 0 ID=Phyra94673;Parent=Phyra94673;rank=1 scaffold_22 . exon 185928 185997 . + . ID=Phyra94673.1;Parent=Phyra94673;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 186060 188213 . + 0 ID=Phyra94673;Parent=Phyra94673;rank=2 scaffold_22 . exon 186060 188213 . + . ID=Phyra94673.2;Parent=Phyra94673;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 188262 189509 . + 0 ID=Phyra94673;Parent=Phyra94673;rank=3 scaffold_22 . exon 188262 189509 . + . ID=Phyra94673.3;Parent=Phyra94673;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 189615 190630 . + 0 ID=Phyra94673;Parent=Phyra94673;rank=4 scaffold_22 . exon 189615 190630 . + . ID=Phyra94673.4;Parent=Phyra94673;constitutive=1;ensembl_phase=1;rank=4 scaffold_22 . repeat_region 191867 191874 . ? . description=dust scaffold_22 ensembl protein_coding_gene 190726 191781 . - . ID=Phyra77069;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000040;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 190726 191781 . - . ID=Phyra77069;Parent=Phyra77069;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 190726 191781 . - 0 ID=Phyra77069;Parent=Phyra77069;rank=1 scaffold_22 . exon 190726 191781 . - . ID=Phyra77069.1;Parent=Phyra77069;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 191892 193268 . - . ID=Phyra77070;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000041;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 191892 193268 . - . ID=Phyra77070;Parent=Phyra77070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 191892 193268 . - 0 ID=Phyra77070;Parent=Phyra77070;rank=1 scaffold_22 . exon 191892 193268 . - . ID=Phyra77070.1;Parent=Phyra77070;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 193654 194484 . - . ID=Phyra77071;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000042;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 193654 194484 . - . ID=Phyra77071;Parent=Phyra77071;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 193654 194484 . - 0 ID=Phyra77071;Parent=Phyra77071;rank=1 scaffold_22 . exon 193654 194484 . - . ID=Phyra77071.1;Parent=Phyra77071;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 195549 198087 . + . ID=Phyra77072;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000043;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 195549 198087 . + . ID=Phyra77072;Parent=Phyra77072;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 195549 196066 . + 0 ID=Phyra77072;Parent=Phyra77072;rank=1 scaffold_22 . exon 195549 196066 . + . ID=Phyra77072.1;Parent=Phyra77072;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 196132 196263 . + 0 ID=Phyra77072;Parent=Phyra77072;rank=2 scaffold_22 . exon 196132 196263 . + . ID=Phyra77072.2;Parent=Phyra77072;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 196332 197613 . + 0 ID=Phyra77072;Parent=Phyra77072;rank=3 scaffold_22 . exon 196332 197613 . + . ID=Phyra77072.3;Parent=Phyra77072;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 197896 198087 . + 0 ID=Phyra77072;Parent=Phyra77072;rank=4 scaffold_22 . exon 197896 198087 . + . ID=Phyra77072.4;Parent=Phyra77072;constitutive=1;rank=4 scaffold_22 ensembl protein_coding_gene 198971 200510 . - . ID=Phyra77074;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000045;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 198971 200510 . - . ID=Phyra77074;Parent=Phyra77074;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 198971 200383 . - 0 ID=Phyra77074;Parent=Phyra77074;rank=2 scaffold_22 . exon 198971 200383 . - . ID=Phyra77074.2;Parent=Phyra77074;constitutive=1;rank=2 scaffold_22 . CDS 200475 200510 . - 0 ID=Phyra77074;Parent=Phyra77074;rank=1 scaffold_22 ensembl protein_coding_gene 198241 198792 . - . ID=Phyra94676;biotype=protein_coding;external_name=C_scaffold_22000005;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 198241 198792 . - . ID=Phyra94676;Parent=Phyra94676;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 198241 198397 . - 0 ID=Phyra94676;Parent=Phyra94676;rank=2 scaffold_22 . exon 198241 198397 . - . ID=Phyra94676.2;Parent=Phyra94676;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 198473 198792 . - 0 ID=Phyra94676;Parent=Phyra94676;rank=1 scaffold_22 . exon 198473 198792 . - . ID=Phyra94676.1;Parent=Phyra94676;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . biological_region 204194 204197 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 207457 208912 . + . ID=Phyra71482;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_22000005;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 207457 208912 . + . ID=Phyra71482;Parent=Phyra71482;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 207457 207569 . + 0 ID=Phyra71482;Parent=Phyra71482;rank=1 scaffold_22 . exon 207457 207569 . + . ID=Phyra71482.1;Parent=Phyra71482;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 207638 207839 . + 0 ID=Phyra71482;Parent=Phyra71482;rank=2 scaffold_22 . exon 207638 207839 . + . ID=Phyra71482.2;Parent=Phyra71482;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 207908 208912 . + 0 ID=Phyra71482;Parent=Phyra71482;rank=3 scaffold_22 . exon 207908 208912 . + . ID=Phyra71482.3;Parent=Phyra71482;constitutive=1;rank=3 scaffold_22 . exon 200475 200510 . - . ID=Phyra77074.1;Parent=Phyra77074;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 201079 202060 . + . ID=Phyra77075;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000046;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 201079 202060 . + . ID=Phyra77075;Parent=Phyra77075;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 201079 202010 . + 0 ID=Phyra77075;Parent=Phyra77075;rank=1 scaffold_22 . exon 201079 202010 . + . ID=Phyra77075.1;Parent=Phyra77075;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 202051 202060 . + 0 ID=Phyra77075;Parent=Phyra77075;rank=2 scaffold_22 . exon 202051 202060 . + . ID=Phyra77075.2;Parent=Phyra77075;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 ensembl protein_coding_gene 204309 207071 . + . ID=Phyra77076;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000047;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 204309 207071 . + . ID=Phyra77076;Parent=Phyra77076;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 204309 207071 . + 0 ID=Phyra77076;Parent=Phyra77076;rank=1 scaffold_22 . exon 204309 207071 . + . ID=Phyra77076.1;Parent=Phyra77076;constitutive=1;rank=1 scaffold_22 . repeat_region 217967 217975 . ? . description=dust scaffold_22 . repeat_region 218792 218827 . ? . description=trf scaffold_22 ensembl protein_coding_gene 211831 215424 . - . ID=Phyra77078;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000049;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 211831 215424 . - . ID=Phyra77078;Parent=Phyra77078;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 211831 215424 . - 0 ID=Phyra77078;Parent=Phyra77078;rank=1 scaffold_22 . exon 211831 215424 . - . ID=Phyra77078.1;Parent=Phyra77078;constitutive=1;rank=1 scaffold_22 . repeat_region 222690 222757 . - . description=Gypsy-1-I_PI-int scaffold_22 . biological_region 227699 227705 0.999 + . logic_name=eponine scaffold_22 . biological_region 227786 227794 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 220901 222027 . + . ID=Phyra77079;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000050;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 220901 222027 . + . ID=Phyra77079;Parent=Phyra77079;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 220901 220958 . + 0 ID=Phyra77079;Parent=Phyra77079;rank=1 scaffold_22 . exon 220901 220958 . + . ID=Phyra77079.1;Parent=Phyra77079;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 221198 222027 . + 0 ID=Phyra77079;Parent=Phyra77079;rank=2 scaffold_22 . exon 221198 222027 . + . ID=Phyra77079.2;Parent=Phyra77079;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 ensembl protein_coding_gene 226043 227322 . + . ID=Phyra77080;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000051;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 226043 227322 . + . ID=Phyra77080;Parent=Phyra77080;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 226043 226290 . + 0 ID=Phyra77080;Parent=Phyra77080;rank=1 scaffold_22 . exon 226043 226290 . + . ID=Phyra77080.1;Parent=Phyra77080;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 226534 226702 . + 0 ID=Phyra77080;Parent=Phyra77080;rank=2 scaffold_22 . exon 226534 226702 . + . ID=Phyra77080.2;Parent=Phyra77080;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 226775 226963 . + 0 ID=Phyra77080;Parent=Phyra77080;rank=3 scaffold_22 . exon 226775 226963 . + . ID=Phyra77080.3;Parent=Phyra77080;constitutive=1;rank=3 scaffold_22 . CDS 227122 227322 . + 0 ID=Phyra77080;Parent=Phyra77080;rank=4 scaffold_22 . exon 227122 227322 . + . ID=Phyra77080.4;Parent=Phyra77080;constitutive=1;rank=4 scaffold_22 ensembl protein_coding_gene 227695 230406 . - . ID=Phyra77081;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000052;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 227695 230406 . - . ID=Phyra77081;Parent=Phyra77081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 227695 228112 . - 0 ID=Phyra77081;Parent=Phyra77081;rank=6 scaffold_22 . exon 227695 228112 . - . ID=Phyra77081.6;Parent=Phyra77081;constitutive=1;ensembl_phase=2;rank=6 scaffold_22 . CDS 228162 228794 . - 0 ID=Phyra77081;Parent=Phyra77081;rank=5 scaffold_22 . exon 228162 228794 . - . ID=Phyra77081.5;Parent=Phyra77081;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_22 . CDS 228819 228958 . - 0 ID=Phyra77081;Parent=Phyra77081;rank=4 scaffold_22 . exon 228819 228958 . - . ID=Phyra77081.4;Parent=Phyra77081;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_22 . CDS 229150 229165 . - 0 ID=Phyra77081;Parent=Phyra77081;rank=3 scaffold_22 . exon 229150 229165 . - . ID=Phyra77081.3;Parent=Phyra77081;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 229666 230075 . - 0 ID=Phyra77081;Parent=Phyra77081;rank=2 scaffold_22 . CDS 230137 230406 . - 0 ID=Phyra77081;Parent=Phyra77081;rank=1 scaffold_22 ensembl protein_coding_gene 231646 232305 . + . ID=Phyra71483;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_22000006;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 231646 232305 . + . ID=Phyra71483;Parent=Phyra71483;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 231646 232305 . + 0 ID=Phyra71483;Parent=Phyra71483;rank=1 scaffold_22 . exon 231646 232305 . + . ID=Phyra71483.1;Parent=Phyra71483;constitutive=1;rank=1 scaffold_22 . exon 229666 230075 . - . ID=Phyra77081.2;Parent=Phyra77081;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . exon 230137 230406 . - . ID=Phyra77081.1;Parent=Phyra77081;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 232667 234024 . + . ID=Phyra94677;biotype=protein_coding;external_name=C_scaffold_22000006;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 232667 234024 . + . ID=Phyra94677;Parent=Phyra94677;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 232667 232813 . + 0 ID=Phyra94677;Parent=Phyra94677;rank=1 scaffold_22 . exon 232667 232813 . + . ID=Phyra94677.1;Parent=Phyra94677;constitutive=1;rank=1 scaffold_22 . CDS 232868 233185 . + 0 ID=Phyra94677;Parent=Phyra94677;rank=2 scaffold_22 . exon 232868 233185 . + . ID=Phyra94677.2;Parent=Phyra94677;constitutive=1;rank=2 scaffold_22 . CDS 233273 233994 . + 0 ID=Phyra94677;Parent=Phyra94677;rank=3 scaffold_22 . exon 233273 233994 . + . ID=Phyra94677.3;Parent=Phyra94677;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_22 . CDS 234021 234024 . + 0 ID=Phyra94677;Parent=Phyra94677;rank=4 scaffold_22 . exon 234021 234024 . + . ID=Phyra94677.4;Parent=Phyra94677;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 ensembl protein_coding_gene 238199 239786 . - . ID=Phyra94678;biotype=protein_coding;external_name=C_scaffold_22000007;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 238199 239786 . - . ID=Phyra94678;Parent=Phyra94678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 238199 238297 . - 0 ID=Phyra94678;Parent=Phyra94678;rank=6 scaffold_22 . exon 238199 238297 . - . ID=Phyra94678.6;Parent=Phyra94678;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_22 . CDS 238387 238564 . - 0 ID=Phyra94678;Parent=Phyra94678;rank=5 scaffold_22 . exon 238387 238564 . - . ID=Phyra94678.5;Parent=Phyra94678;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_22 . CDS 238972 239152 . - 0 ID=Phyra94678;Parent=Phyra94678;rank=4 scaffold_22 . exon 238972 239152 . - . ID=Phyra94678.4;Parent=Phyra94678;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 239232 239306 . - 0 ID=Phyra94678;Parent=Phyra94678;rank=3 scaffold_22 . exon 239232 239306 . - . ID=Phyra94678.3;Parent=Phyra94678;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_22 . CDS 239376 239653 . - 0 ID=Phyra94678;Parent=Phyra94678;rank=2 scaffold_22 . exon 239376 239653 . - . ID=Phyra94678.2;Parent=Phyra94678;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 239718 239786 . - 0 ID=Phyra94678;Parent=Phyra94678;rank=1 scaffold_22 . repeat_region 240401 240441 . ? . description=dust scaffold_22 . repeat_region 240402 240438 . ? . description=trf scaffold_22 . biological_region 240650 240652 0.999 - . logic_name=eponine scaffold_22 . biological_region 241112 241113 0.999 - . logic_name=eponine scaffold_22 . biological_region 247013 247016 0.999 - . logic_name=eponine scaffold_22 . exon 239718 239786 . - . ID=Phyra94678.1;Parent=Phyra94678;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 240281 242238 . + . ID=Phyra94679;biotype=protein_coding;external_name=C_scaffold_22000008;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 240281 242238 . + . ID=Phyra94679;Parent=Phyra94679;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 240281 240796 . + 0 ID=Phyra94679;Parent=Phyra94679;rank=1 scaffold_22 . exon 240281 240796 . + . ID=Phyra94679.1;Parent=Phyra94679;constitutive=1;rank=1 scaffold_22 . CDS 240857 241127 . + 0 ID=Phyra94679;Parent=Phyra94679;rank=2 scaffold_22 . exon 240857 241127 . + . ID=Phyra94679.2;Parent=Phyra94679;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 . CDS 241218 241242 . + 0 ID=Phyra94679;Parent=Phyra94679;rank=3 scaffold_22 . exon 241218 241242 . + . ID=Phyra94679.3;Parent=Phyra94679;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_22 . CDS 241465 241601 . + 0 ID=Phyra94679;Parent=Phyra94679;rank=4 scaffold_22 . exon 241465 241601 . + . ID=Phyra94679.4;Parent=Phyra94679;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 241872 242060 . + 0 ID=Phyra94679;Parent=Phyra94679;rank=5 scaffold_22 . exon 241872 242060 . + . ID=Phyra94679.5;Parent=Phyra94679;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_22 . CDS 242081 242238 . + 0 ID=Phyra94679;Parent=Phyra94679;rank=6 scaffold_22 . exon 242081 242238 . + . ID=Phyra94679.6;Parent=Phyra94679;constitutive=1;ensembl_phase=1;rank=6 scaffold_22 ensembl protein_coding_gene 247433 248151 . + . ID=Phyra94681;biotype=protein_coding;external_name=C_scaffold_22000010;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 247433 248151 . + . ID=Phyra94681;Parent=Phyra94681;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 247433 248070 . + 0 ID=Phyra94681;Parent=Phyra94681;rank=1 scaffold_22 . exon 247433 248070 . + . ID=Phyra94681.1;Parent=Phyra94681;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 248142 248151 . + 0 ID=Phyra94681;Parent=Phyra94681;rank=2 scaffold_22 . exon 248142 248151 . + . ID=Phyra94681.2;Parent=Phyra94681;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 ensembl protein_coding_gene 248381 250543 . - . ID=Phyra94683;biotype=protein_coding;external_name=C_scaffold_22000012;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 248381 250543 . - . ID=Phyra94683;Parent=Phyra94683;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 248381 248527 . - 0 ID=Phyra94683;Parent=Phyra94683;rank=3 scaffold_22 . exon 248381 248527 . - . ID=Phyra94683.3;Parent=Phyra94683;constitutive=1;rank=3 scaffold_22 . CDS 248981 250014 . - 0 ID=Phyra94683;Parent=Phyra94683;rank=2 scaffold_22 . exon 248981 250014 . - . ID=Phyra94683.2;Parent=Phyra94683;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 250168 250543 . - 0 ID=Phyra94683;Parent=Phyra94683;rank=1 scaffold_22 ensembl protein_coding_gene 252143 252403 . - . ID=Phyra44707;biotype=protein_coding;external_name=gwEuk.22.10.1;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 252143 252403 . - . ID=Phyra44707;Parent=Phyra44707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 252143 252403 . - 0 ID=Phyra44707;Parent=Phyra44707;rank=1 scaffold_22 . exon 252143 252403 . - . ID=Phyra44707.1;Parent=Phyra44707;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 250657 252060 . + . ID=Phyra77087;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000058;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 250657 252060 . + . ID=Phyra77087;Parent=Phyra77087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 250657 250736 . + 0 ID=Phyra77087;Parent=Phyra77087;rank=1 scaffold_22 . exon 250657 250736 . + . ID=Phyra77087.1;Parent=Phyra77087;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 250816 250932 . + 0 ID=Phyra77087;Parent=Phyra77087;rank=2 scaffold_22 . exon 250816 250932 . + . ID=Phyra77087.2;Parent=Phyra77087;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 251001 251043 . + 0 ID=Phyra77087;Parent=Phyra77087;rank=3 scaffold_22 . exon 251001 251043 . + . ID=Phyra77087.3;Parent=Phyra77087;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 251095 251483 . + 0 ID=Phyra77087;Parent=Phyra77087;rank=4 scaffold_22 . exon 251095 251483 . + . ID=Phyra77087.4;Parent=Phyra77087;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_22 . CDS 251553 251808 . + 0 ID=Phyra77087;Parent=Phyra77087;rank=5 scaffold_22 . exon 251553 251808 . + . ID=Phyra77087.5;Parent=Phyra77087;constitutive=1;ensembl_phase=2;rank=5 scaffold_22 . CDS 251899 252060 . + 0 ID=Phyra77087;Parent=Phyra77087;rank=6 scaffold_22 . exon 251899 252060 . + . ID=Phyra77087.6;Parent=Phyra77087;constitutive=1;rank=6 scaffold_22 ensembl protein_coding_gene 252521 255096 . + . ID=Phyra77088;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000059;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 252521 255096 . + . ID=Phyra77088;Parent=Phyra77088;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 252521 254938 . + 0 ID=Phyra77088;Parent=Phyra77088;rank=1 scaffold_22 . exon 252521 254938 . + . ID=Phyra77088.1;Parent=Phyra77088;constitutive=1;rank=1 scaffold_22 . CDS 255025 255096 . + 0 ID=Phyra77088;Parent=Phyra77088;rank=2 scaffold_22 . exon 255025 255096 . + . ID=Phyra77088.2;Parent=Phyra77088;constitutive=1;rank=2 scaffold_22 ensembl protein_coding_gene 255278 257165 . - . ID=Phyra77089;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000060;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 255278 257165 . - . ID=Phyra77089;Parent=Phyra77089;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 255278 256046 . - 0 ID=Phyra77089;Parent=Phyra77089;rank=4 scaffold_22 . exon 255278 256046 . - . ID=Phyra77089.4;Parent=Phyra77089;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 256121 256878 . - 0 ID=Phyra77089;Parent=Phyra77089;rank=3 scaffold_22 . exon 256121 256878 . - . ID=Phyra77089.3;Parent=Phyra77089;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_22 . CDS 256904 256950 . - 0 ID=Phyra77089;Parent=Phyra77089;rank=2 scaffold_22 . exon 256904 256950 . - . ID=Phyra77089.2;Parent=Phyra77089;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 257003 257165 . - 0 ID=Phyra77089;Parent=Phyra77089;rank=1 scaffold_22 . exon 257003 257165 . - . ID=Phyra77089.1;Parent=Phyra77089;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 257348 262450 . - . ID=Phyra77090;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000061;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 257348 262450 . - . ID=Phyra77090;Parent=Phyra77090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 257348 260048 . - 0 ID=Phyra77090;Parent=Phyra77090;rank=6 scaffold_22 . exon 257348 260048 . - . ID=Phyra77090.6;Parent=Phyra77090;constitutive=1;ensembl_phase=2;rank=6 scaffold_22 . CDS 260326 260330 . - 0 ID=Phyra77090;Parent=Phyra77090;rank=5 scaffold_22 . CDS 260360 261199 . - 0 ID=Phyra77090;Parent=Phyra77090;rank=4 scaffold_22 . CDS 261267 261404 . - 0 ID=Phyra77090;Parent=Phyra77090;rank=3 scaffold_22 . CDS 261491 261552 . - 0 ID=Phyra77090;Parent=Phyra77090;rank=2 scaffold_22 . CDS 261670 262450 . - 0 ID=Phyra77090;Parent=Phyra77090;rank=1 scaffold_22 . exon 250168 250543 . - . ID=Phyra94683.1;Parent=Phyra94683;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . repeat_region 264619 264627 . ? . description=dust scaffold_22 . exon 260326 260330 . - . ID=Phyra77090.5;Parent=Phyra77090;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_22 . exon 260360 261199 . - . ID=Phyra77090.4;Parent=Phyra77090;constitutive=1;rank=4 scaffold_22 . exon 261267 261404 . - . ID=Phyra77090.3;Parent=Phyra77090;constitutive=1;rank=3 scaffold_22 . exon 261491 261552 . - . ID=Phyra77090.2;Parent=Phyra77090;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . exon 261670 262450 . - . ID=Phyra77090.1;Parent=Phyra77090;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 262999 264683 . - . ID=Phyra77091;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000062;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 262999 264683 . - . ID=Phyra77091;Parent=Phyra77091;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 262999 264387 . - 0 ID=Phyra77091;Parent=Phyra77091;rank=2 scaffold_22 . exon 262999 264387 . - . ID=Phyra77091.2;Parent=Phyra77091;constitutive=1;rank=2 scaffold_22 . CDS 264459 264683 . - 0 ID=Phyra77091;Parent=Phyra77091;rank=1 scaffold_22 . exon 264459 264683 . - . ID=Phyra77091.1;Parent=Phyra77091;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 264850 265403 . + . ID=Phyra77092;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000063;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 264850 265403 . + . ID=Phyra77092;Parent=Phyra77092;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 264850 264873 . + 0 ID=Phyra77092;Parent=Phyra77092;rank=1 scaffold_22 . exon 264850 264873 . + . ID=Phyra77092.1;Parent=Phyra77092;constitutive=1;rank=1 scaffold_22 . CDS 264903 265403 . + 0 ID=Phyra77092;Parent=Phyra77092;rank=2 scaffold_22 . exon 264903 265403 . + . ID=Phyra77092.2;Parent=Phyra77092;constitutive=1;rank=2 scaffold_22 ensembl protein_coding_gene 265587 266925 . - . ID=Phyra77093;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000064;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 265587 266925 . - . ID=Phyra77093;Parent=Phyra77093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 265587 266256 . - 0 ID=Phyra77093;Parent=Phyra77093;rank=3 scaffold_22 . exon 265587 266256 . - . ID=Phyra77093.3;Parent=Phyra77093;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 266349 266435 . - 0 ID=Phyra77093;Parent=Phyra77093;rank=2 scaffold_22 . exon 266349 266435 . - . ID=Phyra77093.2;Parent=Phyra77093;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 266501 266925 . - 0 ID=Phyra77093;Parent=Phyra77093;rank=1 scaffold_22 . exon 266501 266925 . - . ID=Phyra77093.1;Parent=Phyra77093;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 267144 267967 . + . ID=Phyra77094;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000065;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 267144 267967 . + . ID=Phyra77094;Parent=Phyra77094;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 267144 267607 . + 0 ID=Phyra77094;Parent=Phyra77094;rank=1 scaffold_22 . exon 267144 267607 . + . ID=Phyra77094.1;Parent=Phyra77094;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 267679 267725 . + 0 ID=Phyra77094;Parent=Phyra77094;rank=2 scaffold_22 . exon 267679 267725 . + . ID=Phyra77094.2;Parent=Phyra77094;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 267768 267967 . + 0 ID=Phyra77094;Parent=Phyra77094;rank=3 scaffold_22 . exon 267768 267967 . + . ID=Phyra77094.3;Parent=Phyra77094;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 ensembl protein_coding_gene 268700 271805 . + . ID=Phyra77095;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000066;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 268700 271805 . + . ID=Phyra77095;Parent=Phyra77095;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 268700 268951 . + 0 ID=Phyra77095;Parent=Phyra77095;rank=1 scaffold_22 . exon 268700 268951 . + . ID=Phyra77095.1;Parent=Phyra77095;constitutive=1;rank=1 scaffold_22 . CDS 269024 269056 . + 0 ID=Phyra77095;Parent=Phyra77095;rank=2 scaffold_22 . exon 269024 269056 . + . ID=Phyra77095.2;Parent=Phyra77095;constitutive=1;rank=2 scaffold_22 . CDS 269122 269165 . + 0 ID=Phyra77095;Parent=Phyra77095;rank=3 scaffold_22 . exon 269122 269165 . + . ID=Phyra77095.3;Parent=Phyra77095;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_22 . CDS 269236 269284 . + 0 ID=Phyra77095;Parent=Phyra77095;rank=4 scaffold_22 . exon 269236 269284 . + . ID=Phyra77095.4;Parent=Phyra77095;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 269379 269640 . + 0 ID=Phyra77095;Parent=Phyra77095;rank=5 scaffold_22 . exon 269379 269640 . + . ID=Phyra77095.5;Parent=Phyra77095;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_22 . CDS 269716 270416 . + 0 ID=Phyra77095;Parent=Phyra77095;rank=6 scaffold_22 . CDS 270493 270572 . + 0 ID=Phyra77095;Parent=Phyra77095;rank=7 scaffold_22 . CDS 270639 271004 . + 0 ID=Phyra77095;Parent=Phyra77095;rank=8 scaffold_22 . CDS 271115 271805 . + 0 ID=Phyra77095;Parent=Phyra77095;rank=9 scaffold_22 . biological_region 270677 270679 0.999 + . logic_name=eponine scaffold_22 . biological_region 274465 274470 0.999 + . logic_name=eponine scaffold_22 . exon 269716 270416 . + . ID=Phyra77095.6;Parent=Phyra77095;constitutive=1;ensembl_phase=1;rank=6 scaffold_22 . exon 270493 270572 . + . ID=Phyra77095.7;Parent=Phyra77095;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_22 . exon 270639 271004 . + . ID=Phyra77095.8;Parent=Phyra77095;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_22 . exon 271115 271805 . + . ID=Phyra77095.9;Parent=Phyra77095;constitutive=1;ensembl_phase=2;rank=9 scaffold_22 ensembl protein_coding_gene 272052 275092 . - . ID=Phyra77096;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000067;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 272052 275092 . - . ID=Phyra77096;Parent=Phyra77096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 272052 272129 . - 0 ID=Phyra77096;Parent=Phyra77096;rank=4 scaffold_22 . exon 272052 272129 . - . ID=Phyra77096.4;Parent=Phyra77096;constitutive=1;rank=4 scaffold_22 . CDS 272213 272272 . - 0 ID=Phyra77096;Parent=Phyra77096;rank=3 scaffold_22 . exon 272213 272272 . - . ID=Phyra77096.3;Parent=Phyra77096;constitutive=1;rank=3 scaffold_22 . CDS 272345 274226 . - 0 ID=Phyra77096;Parent=Phyra77096;rank=2 scaffold_22 . exon 272345 274226 . - . ID=Phyra77096.2;Parent=Phyra77096;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 274296 275092 . - 0 ID=Phyra77096;Parent=Phyra77096;rank=1 scaffold_22 . exon 274296 275092 . - . ID=Phyra77096.1;Parent=Phyra77096;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 276105 277252 . + . ID=Phyra77097;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000068;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 276105 277252 . + . ID=Phyra77097;Parent=Phyra77097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 276105 276225 . + 0 ID=Phyra77097;Parent=Phyra77097;rank=1 scaffold_22 . exon 276105 276225 . + . ID=Phyra77097.1;Parent=Phyra77097;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 276265 276424 . + 0 ID=Phyra77097;Parent=Phyra77097;rank=2 scaffold_22 . exon 276265 276424 . + . ID=Phyra77097.2;Parent=Phyra77097;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_22 . CDS 276481 277252 . + 0 ID=Phyra77097;Parent=Phyra77097;rank=3 scaffold_22 . exon 276481 277252 . + . ID=Phyra77097.3;Parent=Phyra77097;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 ensembl protein_coding_gene 277285 277686 . - . ID=Phyra77098;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000069;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 277285 277686 . - . ID=Phyra77098;Parent=Phyra77098;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 277285 277686 . - 0 ID=Phyra77098;Parent=Phyra77098;rank=1 scaffold_22 . exon 277285 277686 . - . ID=Phyra77098.1;Parent=Phyra77098;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 277899 283573 . + . ID=Phyra94686;biotype=protein_coding;external_name=C_scaffold_22000015;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 277899 283573 . + . ID=Phyra94686;Parent=Phyra94686;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 277899 277954 . + 0 ID=Phyra94686;Parent=Phyra94686;rank=1 scaffold_22 . exon 277899 277954 . + . ID=Phyra94686.1;Parent=Phyra94686;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 278016 278294 . + 0 ID=Phyra94686;Parent=Phyra94686;rank=2 scaffold_22 . exon 278016 278294 . + . ID=Phyra94686.2;Parent=Phyra94686;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 278364 279035 . + 0 ID=Phyra94686;Parent=Phyra94686;rank=3 scaffold_22 . exon 278364 279035 . + . ID=Phyra94686.3;Parent=Phyra94686;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_22 . CDS 279148 279435 . + 0 ID=Phyra94686;Parent=Phyra94686;rank=4 scaffold_22 . exon 279148 279435 . + . ID=Phyra94686.4;Parent=Phyra94686;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_22 . CDS 279518 279648 . + 0 ID=Phyra94686;Parent=Phyra94686;rank=5 scaffold_22 . exon 279518 279648 . + . ID=Phyra94686.5;Parent=Phyra94686;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_22 . CDS 279682 281790 . + 0 ID=Phyra94686;Parent=Phyra94686;rank=6 scaffold_22 . CDS 282079 282360 . + 0 ID=Phyra94686;Parent=Phyra94686;rank=7 scaffold_22 . CDS 282388 282622 . + 0 ID=Phyra94686;Parent=Phyra94686;rank=8 scaffold_22 . CDS 282708 282764 . + 0 ID=Phyra94686;Parent=Phyra94686;rank=9 scaffold_22 . CDS 282831 283076 . + 0 ID=Phyra94686;Parent=Phyra94686;rank=10 scaffold_22 . CDS 283144 283299 . + 0 ID=Phyra94686;Parent=Phyra94686;rank=11 scaffold_22 . CDS 283342 283573 . + 0 ID=Phyra94686;Parent=Phyra94686;rank=12 scaffold_22 ensembl protein_coding_gene 283646 286066 . - . ID=Phyra77100;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000071;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 283646 286066 . - . ID=Phyra77100;Parent=Phyra77100;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 283646 286066 . - 0 ID=Phyra77100;Parent=Phyra77100;rank=1 scaffold_22 . exon 283646 286066 . - . ID=Phyra77100.1;Parent=Phyra77100;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 287395 288408 . - . ID=Phyra77101;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000072;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 287395 288408 . - . ID=Phyra77101;Parent=Phyra77101;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 287395 288408 . - 0 ID=Phyra77101;Parent=Phyra77101;rank=1 scaffold_22 . exon 287395 288408 . - . ID=Phyra77101.1;Parent=Phyra77101;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 288985 290526 . - . ID=Phyra77102;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000073;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 288985 290526 . - . ID=Phyra77102;Parent=Phyra77102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 288985 289137 . - 0 ID=Phyra77102;Parent=Phyra77102;rank=6 scaffold_22 . exon 288985 289137 . - . ID=Phyra77102.6;Parent=Phyra77102;constitutive=1;rank=6 scaffold_22 . CDS 289251 289620 . - 0 ID=Phyra77102;Parent=Phyra77102;rank=5 scaffold_22 . exon 289251 289620 . - . ID=Phyra77102.5;Parent=Phyra77102;constitutive=1;ensembl_phase=2;rank=5 scaffold_22 . CDS 289750 289802 . - 0 ID=Phyra77102;Parent=Phyra77102;rank=4 scaffold_22 . CDS 289886 290068 . - 0 ID=Phyra77102;Parent=Phyra77102;rank=3 scaffold_22 . CDS 290234 290299 . - 0 ID=Phyra77102;Parent=Phyra77102;rank=2 scaffold_22 . CDS 290356 290526 . - 0 ID=Phyra77102;Parent=Phyra77102;rank=1 scaffold_22 . exon 279682 281790 . + . ID=Phyra94686.6;Parent=Phyra94686;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_22 . exon 282079 282360 . + . ID=Phyra94686.7;Parent=Phyra94686;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_22 . exon 282388 282622 . + . ID=Phyra94686.8;Parent=Phyra94686;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_22 . exon 282708 282764 . + . ID=Phyra94686.9;Parent=Phyra94686;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_22 . exon 282831 283076 . + . ID=Phyra94686.10;Parent=Phyra94686;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_22 . exon 283144 283299 . + . ID=Phyra94686.11;Parent=Phyra94686;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_22 . exon 283342 283573 . + . ID=Phyra94686.12;Parent=Phyra94686;constitutive=1;ensembl_phase=2;rank=12 scaffold_22 . biological_region 289713 289714 0.999 - . logic_name=eponine scaffold_22 . biological_region 290565 290565 0.999 - . logic_name=eponine scaffold_22 . biological_region 291454 291457 0.999 - . logic_name=eponine scaffold_22 . repeat_region 297957 297988 . ? . description=trf scaffold_22 . repeat_region 298367 298439 . ? . description=trf scaffold_22 . repeat_region 298374 298445 . ? . description=dust scaffold_22 . repeat_region 298376 298446 . ? . description=trf scaffold_22 . repeat_region 298391 298439 . ? . description=trf scaffold_22 . repeat_region 298394 298434 . ? . description=trf scaffold_22 . repeat_region 298394 298446 . ? . description=trf scaffold_22 . exon 289750 289802 . - . ID=Phyra77102.4;Parent=Phyra77102;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_22 . exon 289886 290068 . - . ID=Phyra77102.3;Parent=Phyra77102;constitutive=1;rank=3 scaffold_22 . exon 290234 290299 . - . ID=Phyra77102.2;Parent=Phyra77102;constitutive=1;rank=2 scaffold_22 . exon 290356 290526 . - . ID=Phyra77102.1;Parent=Phyra77102;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 291276 291805 . + . ID=Phyra77103;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000074;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 291276 291805 . + . ID=Phyra77103;Parent=Phyra77103;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 291276 291625 . + 0 ID=Phyra77103;Parent=Phyra77103;rank=1 scaffold_22 . exon 291276 291625 . + . ID=Phyra77103.1;Parent=Phyra77103;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 291796 291805 . + 0 ID=Phyra77103;Parent=Phyra77103;rank=2 scaffold_22 . exon 291796 291805 . + . ID=Phyra77103.2;Parent=Phyra77103;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 ensembl protein_coding_gene 297869 298679 . - . ID=Phyra77104;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000075;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 297869 298679 . - . ID=Phyra77104;Parent=Phyra77104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 297869 298180 . - 0 ID=Phyra77104;Parent=Phyra77104;rank=4 scaffold_22 . exon 297869 298180 . - . ID=Phyra77104.4;Parent=Phyra77104;constitutive=1;rank=4 scaffold_22 . CDS 298205 298227 . - 0 ID=Phyra77104;Parent=Phyra77104;rank=3 scaffold_22 . exon 298205 298227 . - . ID=Phyra77104.3;Parent=Phyra77104;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 298344 298489 . - 0 ID=Phyra77104;Parent=Phyra77104;rank=2 scaffold_22 . exon 298344 298489 . - . ID=Phyra77104.2;Parent=Phyra77104;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 298567 298679 . - 0 ID=Phyra77104;Parent=Phyra77104;rank=1 scaffold_22 . exon 298567 298679 . - . ID=Phyra77104.1;Parent=Phyra77104;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 296026 297487 . + . ID=Phyra94687;biotype=protein_coding;external_name=C_scaffold_22000016;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 296026 297487 . + . ID=Phyra94687;Parent=Phyra94687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 296026 296060 . + 0 ID=Phyra94687;Parent=Phyra94687;rank=1 scaffold_22 . exon 296026 296060 . + . ID=Phyra94687.1;Parent=Phyra94687;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 296731 297068 . + 0 ID=Phyra94687;Parent=Phyra94687;rank=2 scaffold_22 . exon 296731 297068 . + . ID=Phyra94687.2;Parent=Phyra94687;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 297171 297487 . + 0 ID=Phyra94687;Parent=Phyra94687;rank=3 scaffold_22 . exon 297171 297487 . + . ID=Phyra94687.3;Parent=Phyra94687;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 ensembl protein_coding_gene 301793 303621 . - . ID=Phyra77105;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000076;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 301793 303621 . - . ID=Phyra77105;Parent=Phyra77105;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 301793 301803 . - 0 ID=Phyra77105;Parent=Phyra77105;rank=2 scaffold_22 . exon 301793 301803 . - . ID=Phyra77105.2;Parent=Phyra77105;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 302187 303621 . - 0 ID=Phyra77105;Parent=Phyra77105;rank=1 scaffold_22 . exon 302187 303621 . - . ID=Phyra77105.1;Parent=Phyra77105;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 304766 305401 . + . ID=Phyra77106;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000077;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 304766 305401 . + . ID=Phyra77106;Parent=Phyra77106;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 304766 305401 . + 0 ID=Phyra77106;Parent=Phyra77106;rank=1 scaffold_22 . exon 304766 305401 . + . ID=Phyra77106.1;Parent=Phyra77106;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 307992 309383 . + . ID=Phyra77108;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000079;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 307992 309383 . + . ID=Phyra77108;Parent=Phyra77108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 307992 309383 . + 0 ID=Phyra77108;Parent=Phyra77108;rank=1 scaffold_22 . exon 307992 309383 . + . ID=Phyra77108.1;Parent=Phyra77108;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 305958 307666 . - . ID=Phyra94690;biotype=protein_coding;external_name=C_scaffold_22000019;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 305958 307666 . - . ID=Phyra94690;Parent=Phyra94690;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 305958 306095 . - 0 ID=Phyra94690;Parent=Phyra94690;rank=6 scaffold_22 . exon 305958 306095 . - . ID=Phyra94690.6;Parent=Phyra94690;constitutive=1;rank=6 scaffold_22 . CDS 306200 306226 . - 0 ID=Phyra94690;Parent=Phyra94690;rank=5 scaffold_22 . exon 306200 306226 . - . ID=Phyra94690.5;Parent=Phyra94690;constitutive=1;rank=5 scaffold_22 . CDS 306373 306599 . - 0 ID=Phyra94690;Parent=Phyra94690;rank=4 scaffold_22 . exon 306373 306599 . - . ID=Phyra94690.4;Parent=Phyra94690;constitutive=1;ensembl_phase=1;rank=4 scaffold_22 . CDS 306849 307107 . - 0 ID=Phyra94690;Parent=Phyra94690;rank=3 scaffold_22 . exon 306849 307107 . - . ID=Phyra94690.3;Parent=Phyra94690;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_22 . CDS 307169 307514 . - 0 ID=Phyra94690;Parent=Phyra94690;rank=2 scaffold_22 . exon 307169 307514 . - . ID=Phyra94690.2;Parent=Phyra94690;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 307548 307666 . - 0 ID=Phyra94690;Parent=Phyra94690;rank=1 scaffold_22 . exon 307548 307666 . - . ID=Phyra94690.1;Parent=Phyra94690;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 310674 312141 . - . ID=Phyra77109;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000080;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 310674 312141 . - . ID=Phyra77109;Parent=Phyra77109;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 310674 310815 . - 0 ID=Phyra77109;Parent=Phyra77109;rank=4 scaffold_22 . exon 310674 310815 . - . ID=Phyra77109.4;Parent=Phyra77109;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 311186 311632 . - 0 ID=Phyra77109;Parent=Phyra77109;rank=3 scaffold_22 . exon 311186 311632 . - . ID=Phyra77109.3;Parent=Phyra77109;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_22 . CDS 311780 311849 . - 0 ID=Phyra77109;Parent=Phyra77109;rank=2 scaffold_22 . exon 311780 311849 . - . ID=Phyra77109.2;Parent=Phyra77109;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_22 . CDS 311949 312141 . - 0 ID=Phyra77109;Parent=Phyra77109;rank=1 scaffold_22 . exon 311949 312141 . - . ID=Phyra77109.1;Parent=Phyra77109;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 318994 320556 . + . ID=Phyra77110;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000081;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 318994 320556 . + . ID=Phyra77110;Parent=Phyra77110;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 318994 320556 . + 0 ID=Phyra77110;Parent=Phyra77110;rank=1 scaffold_22 . exon 318994 320556 . + . ID=Phyra77110.1;Parent=Phyra77110;constitutive=1;rank=1 scaffold_22 . biological_region 322172 322174 0.999 + . logic_name=eponine scaffold_22 . biological_region 329059 329065 0.999 - . logic_name=eponine scaffold_22 ensembl protein_coding_gene 320593 320994 . - . ID=Phyra77111;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000082;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 320593 320994 . - . ID=Phyra77111;Parent=Phyra77111;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 320593 320802 . - 0 ID=Phyra77111;Parent=Phyra77111;rank=2 scaffold_22 . exon 320593 320802 . - . ID=Phyra77111.2;Parent=Phyra77111;constitutive=1;rank=2 scaffold_22 . CDS 320872 320994 . - 0 ID=Phyra77111;Parent=Phyra77111;rank=1 scaffold_22 . exon 320872 320994 . - . ID=Phyra77111.1;Parent=Phyra77111;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 321194 322429 . + . ID=Phyra77112;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000083;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 321194 322429 . + . ID=Phyra77112;Parent=Phyra77112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 321194 321216 . + 0 ID=Phyra77112;Parent=Phyra77112;rank=1 scaffold_22 . exon 321194 321216 . + . ID=Phyra77112.1;Parent=Phyra77112;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 321639 321792 . + 0 ID=Phyra77112;Parent=Phyra77112;rank=2 scaffold_22 . exon 321639 321792 . + . ID=Phyra77112.2;Parent=Phyra77112;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 321872 322429 . + 0 ID=Phyra77112;Parent=Phyra77112;rank=3 scaffold_22 . exon 321872 322429 . + . ID=Phyra77112.3;Parent=Phyra77112;constitutive=1;rank=3 scaffold_22 ensembl protein_coding_gene 322611 329000 . - . ID=Phyra77113;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000084;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 322611 329000 . - . ID=Phyra77113;Parent=Phyra77113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 322611 326433 . - 0 ID=Phyra77113;Parent=Phyra77113;rank=7 scaffold_22 . exon 322611 326433 . - . ID=Phyra77113.7;Parent=Phyra77113;constitutive=1;ensembl_phase=2;rank=7 scaffold_22 . CDS 326501 327213 . - 0 ID=Phyra77113;Parent=Phyra77113;rank=6 scaffold_22 . exon 326501 327213 . - . ID=Phyra77113.6;Parent=Phyra77113;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_22 . CDS 327266 327421 . - 0 ID=Phyra77113;Parent=Phyra77113;rank=5 scaffold_22 . exon 327266 327421 . - . ID=Phyra77113.5;Parent=Phyra77113;constitutive=1;rank=5 scaffold_22 . CDS 327749 327787 . - 0 ID=Phyra77113;Parent=Phyra77113;rank=4 scaffold_22 . exon 327749 327787 . - . ID=Phyra77113.4;Parent=Phyra77113;constitutive=1;rank=4 scaffold_22 . CDS 327808 327951 . - 0 ID=Phyra77113;Parent=Phyra77113;rank=3 scaffold_22 . exon 327808 327951 . - . ID=Phyra77113.3;Parent=Phyra77113;constitutive=1;rank=3 scaffold_22 . CDS 328021 328383 . - 0 ID=Phyra77113;Parent=Phyra77113;rank=2 scaffold_22 . exon 328021 328383 . - . ID=Phyra77113.2;Parent=Phyra77113;constitutive=1;rank=2 scaffold_22 . CDS 328446 329000 . - 0 ID=Phyra77113;Parent=Phyra77113;rank=1 scaffold_22 . exon 328446 329000 . - . ID=Phyra77113.1;Parent=Phyra77113;constitutive=1;rank=1 scaffold_22 . repeat_region 331819 331832 . ? . description=dust scaffold_22 . repeat_region 332836 332875 . ? . description=trf scaffold_22 . repeat_region 334988 334995 . ? . description=dust scaffold_22 . repeat_region 335370 335390 . ? . description=trf scaffold_22 ensembl protein_coding_gene 335156 339367 . - . ID=Phyra77117;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000088;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 335156 339367 . - . ID=Phyra77117;Parent=Phyra77117;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 335156 339367 . - 0 ID=Phyra77117;Parent=Phyra77117;rank=1 scaffold_22 . exon 335156 339367 . - . ID=Phyra77117.1;Parent=Phyra77117;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 329475 331788 . - . ID=Phyra94695;biotype=protein_coding;external_name=C_scaffold_22000024;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 329475 331788 . - . ID=Phyra94695;Parent=Phyra94695;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 329475 329477 . - 0 ID=Phyra94695;Parent=Phyra94695;rank=8 scaffold_22 . exon 329475 329477 . - . ID=Phyra94695.8;Parent=Phyra94695;constitutive=1;rank=8 scaffold_22 . CDS 329515 329625 . - 0 ID=Phyra94695;Parent=Phyra94695;rank=7 scaffold_22 . exon 329515 329625 . - . ID=Phyra94695.7;Parent=Phyra94695;constitutive=1;rank=7 scaffold_22 . CDS 329704 329823 . - 0 ID=Phyra94695;Parent=Phyra94695;rank=6 scaffold_22 . exon 329704 329823 . - . ID=Phyra94695.6;Parent=Phyra94695;constitutive=1;rank=6 scaffold_22 . CDS 330145 330270 . - 0 ID=Phyra94695;Parent=Phyra94695;rank=5 scaffold_22 . exon 330145 330270 . - . ID=Phyra94695.5;Parent=Phyra94695;constitutive=1;rank=5 scaffold_22 . CDS 330339 330450 . - 0 ID=Phyra94695;Parent=Phyra94695;rank=4 scaffold_22 . exon 330339 330450 . - . ID=Phyra94695.4;Parent=Phyra94695;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 330515 330620 . - 0 ID=Phyra94695;Parent=Phyra94695;rank=3 scaffold_22 . exon 330515 330620 . - . ID=Phyra94695.3;Parent=Phyra94695;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_22 . CDS 330718 330866 . - 0 ID=Phyra94695;Parent=Phyra94695;rank=2 scaffold_22 . exon 330718 330866 . - . ID=Phyra94695.2;Parent=Phyra94695;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 331373 331788 . - 0 ID=Phyra94695;Parent=Phyra94695;rank=1 scaffold_22 . exon 331373 331788 . - . ID=Phyra94695.1;Parent=Phyra94695;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 332057 333074 . + . ID=Phyra94697;biotype=protein_coding;external_name=C_scaffold_22000026;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 332057 333074 . + . ID=Phyra94697;Parent=Phyra94697;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 332057 332143 . + 0 ID=Phyra94697;Parent=Phyra94697;rank=1 scaffold_22 . exon 332057 332143 . + . ID=Phyra94697.1;Parent=Phyra94697;constitutive=1;rank=1 scaffold_22 . CDS 332213 332760 . + 0 ID=Phyra94697;Parent=Phyra94697;rank=2 scaffold_22 . exon 332213 332760 . + . ID=Phyra94697.2;Parent=Phyra94697;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 332858 333074 . + 0 ID=Phyra94697;Parent=Phyra94697;rank=3 scaffold_22 . exon 332858 333074 . + . ID=Phyra94697.3;Parent=Phyra94697;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 ensembl protein_coding_gene 334082 334944 . + . ID=Phyra94699;biotype=protein_coding;external_name=C_scaffold_22000028;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 334082 334944 . + . ID=Phyra94699;Parent=Phyra94699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 334082 334121 . + 0 ID=Phyra94699;Parent=Phyra94699;rank=1 scaffold_22 . exon 334082 334121 . + . ID=Phyra94699.1;Parent=Phyra94699;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 334184 334301 . + 0 ID=Phyra94699;Parent=Phyra94699;rank=2 scaffold_22 . exon 334184 334301 . + . ID=Phyra94699.2;Parent=Phyra94699;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_22 . CDS 334365 334944 . + 0 ID=Phyra94699;Parent=Phyra94699;rank=3 scaffold_22 . exon 334365 334944 . + . ID=Phyra94699.3;Parent=Phyra94699;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . biological_region 341296 341299 0.999 - . logic_name=eponine scaffold_22 . biological_region 342303 342306 0.999 - . logic_name=eponine scaffold_22 . biological_region 343643 343644 0.999 - . logic_name=eponine scaffold_22 . biological_region 343943 343944 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 339864 341571 . - . ID=Phyra77118;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000089;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 339864 341571 . - . ID=Phyra77118;Parent=Phyra77118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 339864 339938 . - 0 ID=Phyra77118;Parent=Phyra77118;rank=9 scaffold_22 . exon 339864 339938 . - . ID=Phyra77118.9;Parent=Phyra77118;constitutive=1;rank=9 scaffold_22 . CDS 340015 340137 . - 0 ID=Phyra77118;Parent=Phyra77118;rank=8 scaffold_22 . exon 340015 340137 . - . ID=Phyra77118.8;Parent=Phyra77118;constitutive=1;rank=8 scaffold_22 . CDS 340234 340388 . - 0 ID=Phyra77118;Parent=Phyra77118;rank=7 scaffold_22 . exon 340234 340388 . - . ID=Phyra77118.7;Parent=Phyra77118;constitutive=1;ensembl_phase=1;rank=7 scaffold_22 . CDS 340449 340542 . - 0 ID=Phyra77118;Parent=Phyra77118;rank=6 scaffold_22 . exon 340449 340542 . - . ID=Phyra77118.6;Parent=Phyra77118;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_22 . CDS 340625 340706 . - 0 ID=Phyra77118;Parent=Phyra77118;rank=5 scaffold_22 . exon 340625 340706 . - . ID=Phyra77118.5;Parent=Phyra77118;constitutive=1;ensembl_phase=2;rank=5 scaffold_22 . CDS 340759 340814 . - 0 ID=Phyra77118;Parent=Phyra77118;rank=4 scaffold_22 . exon 340759 340814 . - . ID=Phyra77118.4;Parent=Phyra77118;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_22 . CDS 340896 341095 . - 0 ID=Phyra77118;Parent=Phyra77118;rank=3 scaffold_22 . exon 340896 341095 . - . ID=Phyra77118.3;Parent=Phyra77118;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 341169 341368 . - 0 ID=Phyra77118;Parent=Phyra77118;rank=2 scaffold_22 . exon 341169 341368 . - . ID=Phyra77118.2;Parent=Phyra77118;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 341432 341571 . - 0 ID=Phyra77118;Parent=Phyra77118;rank=1 scaffold_22 . exon 341432 341571 . - . ID=Phyra77118.1;Parent=Phyra77118;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 341805 343235 . + . ID=Phyra77119;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000090;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 341805 343235 . + . ID=Phyra77119;Parent=Phyra77119;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 341805 343235 . + 0 ID=Phyra77119;Parent=Phyra77119;rank=1 scaffold_22 . exon 341805 343235 . + . ID=Phyra77119.1;Parent=Phyra77119;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 343668 345128 . - . ID=Phyra77120;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000091;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 343668 345128 . - . ID=Phyra77120;Parent=Phyra77120;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 343668 345128 . - 0 ID=Phyra77120;Parent=Phyra77120;rank=1 scaffold_22 . exon 343668 345128 . - . ID=Phyra77120.1;Parent=Phyra77120;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 348145 351632 . - . ID=Phyra77122;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000093;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 348145 351632 . - . ID=Phyra77122;Parent=Phyra77122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 348145 351099 . - 0 ID=Phyra77122;Parent=Phyra77122;rank=3 scaffold_22 . exon 348145 351099 . - . ID=Phyra77122.3;Parent=Phyra77122;constitutive=1;rank=3 scaffold_22 . CDS 351205 351458 . - 0 ID=Phyra77122;Parent=Phyra77122;rank=2 scaffold_22 . CDS 351536 351632 . - 0 ID=Phyra77122;Parent=Phyra77122;rank=1 scaffold_22 ensembl protein_coding_gene 346148 347634 . + . ID=Phyra94701;biotype=protein_coding;external_name=C_scaffold_22000030;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 346148 347634 . + . ID=Phyra94701;Parent=Phyra94701;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 346148 346207 . + 0 ID=Phyra94701;Parent=Phyra94701;rank=1 scaffold_22 . exon 346148 346207 . + . ID=Phyra94701.1;Parent=Phyra94701;constitutive=1;rank=1 scaffold_22 . CDS 346271 346378 . + 0 ID=Phyra94701;Parent=Phyra94701;rank=2 scaffold_22 . exon 346271 346378 . + . ID=Phyra94701.2;Parent=Phyra94701;constitutive=1;rank=2 scaffold_22 . CDS 346448 347005 . + 0 ID=Phyra94701;Parent=Phyra94701;rank=3 scaffold_22 . exon 346448 347005 . + . ID=Phyra94701.3;Parent=Phyra94701;constitutive=1;rank=3 scaffold_22 . CDS 347091 347170 . + 0 ID=Phyra94701;Parent=Phyra94701;rank=4 scaffold_22 . exon 347091 347170 . + . ID=Phyra94701.4;Parent=Phyra94701;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_22 . CDS 347241 347381 . + 0 ID=Phyra94701;Parent=Phyra94701;rank=5 scaffold_22 . exon 347241 347381 . + . ID=Phyra94701.5;Parent=Phyra94701;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_22 . CDS 347448 347634 . + 0 ID=Phyra94701;Parent=Phyra94701;rank=6 scaffold_22 . exon 347448 347634 . + . ID=Phyra94701.6;Parent=Phyra94701;constitutive=1;ensembl_phase=2;rank=6 scaffold_22 . repeat_region 350714 350750 . ? . description=trf scaffold_22 . repeat_region 350932 350955 . ? . description=trf scaffold_22 . repeat_region 356326 356362 . ? . description=dust scaffold_22 . repeat_region 356560 356586 . ? . description=trf scaffold_22 . exon 351205 351458 . - . ID=Phyra77122.2;Parent=Phyra77122;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . exon 351536 351632 . - . ID=Phyra77122.1;Parent=Phyra77122;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 352585 354138 . + . ID=Phyra77123;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000094;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 352585 354138 . + . ID=Phyra77123;Parent=Phyra77123;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 352585 352709 . + 0 ID=Phyra77123;Parent=Phyra77123;rank=1 scaffold_22 . exon 352585 352709 . + . ID=Phyra77123.1;Parent=Phyra77123;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 352801 352841 . + 0 ID=Phyra77123;Parent=Phyra77123;rank=2 scaffold_22 . exon 352801 352841 . + . ID=Phyra77123.2;Parent=Phyra77123;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 352912 353621 . + 0 ID=Phyra77123;Parent=Phyra77123;rank=3 scaffold_22 . exon 352912 353621 . + . ID=Phyra77123.3;Parent=Phyra77123;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 353692 354138 . + 0 ID=Phyra77123;Parent=Phyra77123;rank=4 scaffold_22 . exon 353692 354138 . + . ID=Phyra77123.4;Parent=Phyra77123;constitutive=1;rank=4 scaffold_22 ensembl protein_coding_gene 354232 356703 . - . ID=Phyra77124;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000095;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 354232 356703 . - . ID=Phyra77124;Parent=Phyra77124;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 354232 355029 . - 0 ID=Phyra77124;Parent=Phyra77124;rank=5 scaffold_22 . exon 354232 355029 . - . ID=Phyra77124.5;Parent=Phyra77124;constitutive=1;rank=5 scaffold_22 . CDS 355144 355156 . - 0 ID=Phyra77124;Parent=Phyra77124;rank=4 scaffold_22 . exon 355144 355156 . - . ID=Phyra77124.4;Parent=Phyra77124;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 355177 355213 . - 0 ID=Phyra77124;Parent=Phyra77124;rank=3 scaffold_22 . exon 355177 355213 . - . ID=Phyra77124.3;Parent=Phyra77124;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_22 . CDS 355290 355338 . - 0 ID=Phyra77124;Parent=Phyra77124;rank=2 scaffold_22 . exon 355290 355338 . - . ID=Phyra77124.2;Parent=Phyra77124;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 . CDS 355591 356703 . - 0 ID=Phyra77124;Parent=Phyra77124;rank=1 scaffold_22 . exon 355591 356703 . - . ID=Phyra77124.1;Parent=Phyra77124;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 357756 359330 . + . ID=Phyra77125;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000096;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 357756 359330 . + . ID=Phyra77125;Parent=Phyra77125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 357756 358393 . + 0 ID=Phyra77125;Parent=Phyra77125;rank=1 scaffold_22 . exon 357756 358393 . + . ID=Phyra77125.1;Parent=Phyra77125;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 358739 359330 . + 0 ID=Phyra77125;Parent=Phyra77125;rank=2 scaffold_22 . exon 358739 359330 . + . ID=Phyra77125.2;Parent=Phyra77125;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . repeat_region 372317 372348 . ? . description=trf scaffold_22 . repeat_region 374818 374849 . ? . description=trf scaffold_22 . biological_region 377625 377628 0.999 - . logic_name=eponine scaffold_22 ensembl protein_coding_gene 378722 380051 . - . ID=Phyra44741;biotype=protein_coding;external_name=gwEuk.22.44.1;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 378722 380051 . - . ID=Phyra44741;Parent=Phyra44741;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 378722 379306 . - 0 ID=Phyra44741;Parent=Phyra44741;rank=3 scaffold_22 . exon 378722 379306 . - . ID=Phyra44741.3;Parent=Phyra44741;constitutive=1;rank=3 scaffold_22 . CDS 379375 379557 . - 0 ID=Phyra44741;Parent=Phyra44741;rank=2 scaffold_22 . exon 379375 379557 . - . ID=Phyra44741.2;Parent=Phyra44741;constitutive=1;rank=2 scaffold_22 . CDS 379635 380051 . - 0 ID=Phyra44741;Parent=Phyra44741;rank=1 scaffold_22 ensembl protein_coding_gene 377666 378568 . + . ID=Phyra71484;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_22000007;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 377666 378568 . + . ID=Phyra71484;Parent=Phyra71484;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 377666 378568 . + 0 ID=Phyra71484;Parent=Phyra71484;rank=1 scaffold_22 . exon 377666 378568 . + . ID=Phyra71484.1;Parent=Phyra71484;constitutive=1;rank=1 scaffold_22 . repeat_region 382548 382563 . ? . description=dust scaffold_22 . exon 379635 380051 . - . ID=Phyra44741.1;Parent=Phyra44741;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 385576 389835 . - . ID=Phyra77130;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000101;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 385576 389835 . - . ID=Phyra77130;Parent=Phyra77130;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 385576 385929 . - 0 ID=Phyra77130;Parent=Phyra77130;rank=3 scaffold_22 . exon 385576 385929 . - . ID=Phyra77130.3;Parent=Phyra77130;constitutive=1;rank=3 scaffold_22 . CDS 386000 386068 . - 0 ID=Phyra77130;Parent=Phyra77130;rank=2 scaffold_22 . exon 386000 386068 . - . ID=Phyra77130.2;Parent=Phyra77130;constitutive=1;rank=2 scaffold_22 . CDS 386137 389835 . - 0 ID=Phyra77130;Parent=Phyra77130;rank=1 scaffold_22 . exon 386137 389835 . - . ID=Phyra77130.1;Parent=Phyra77130;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 380457 383019 . - . ID=Phyra94705;biotype=protein_coding;external_name=C_scaffold_22000034;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 380457 383019 . - . ID=Phyra94705;Parent=Phyra94705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 380457 380609 . - 0 ID=Phyra94705;Parent=Phyra94705;rank=8 scaffold_22 . exon 380457 380609 . - . ID=Phyra94705.8;Parent=Phyra94705;constitutive=1;rank=8 scaffold_22 . CDS 380680 381226 . - 0 ID=Phyra94705;Parent=Phyra94705;rank=7 scaffold_22 . exon 380680 381226 . - . ID=Phyra94705.7;Parent=Phyra94705;constitutive=1;ensembl_phase=2;rank=7 scaffold_22 . CDS 381552 381696 . - 0 ID=Phyra94705;Parent=Phyra94705;rank=6 scaffold_22 . exon 381552 381696 . - . ID=Phyra94705.6;Parent=Phyra94705;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_22 . CDS 381867 381958 . - 0 ID=Phyra94705;Parent=Phyra94705;rank=5 scaffold_22 . exon 381867 381958 . - . ID=Phyra94705.5;Parent=Phyra94705;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_22 . CDS 382031 382167 . - 0 ID=Phyra94705;Parent=Phyra94705;rank=4 scaffold_22 . exon 382031 382167 . - . ID=Phyra94705.4;Parent=Phyra94705;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_22 . CDS 382241 382310 . - 0 ID=Phyra94705;Parent=Phyra94705;rank=3 scaffold_22 . exon 382241 382310 . - . ID=Phyra94705.3;Parent=Phyra94705;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 382384 382544 . - 0 ID=Phyra94705;Parent=Phyra94705;rank=2 scaffold_22 . exon 382384 382544 . - . ID=Phyra94705.2;Parent=Phyra94705;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 382612 383019 . - 0 ID=Phyra94705;Parent=Phyra94705;rank=1 scaffold_22 . exon 382612 383019 . - . ID=Phyra94705.1;Parent=Phyra94705;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 383584 384550 . + . ID=Phyra94707;biotype=protein_coding;external_name=C_scaffold_22000036;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 383584 384550 . + . ID=Phyra94707;Parent=Phyra94707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 383584 384315 . + 0 ID=Phyra94707;Parent=Phyra94707;rank=1 scaffold_22 . exon 383584 384315 . + . ID=Phyra94707.1;Parent=Phyra94707;constitutive=1;rank=1 scaffold_22 . CDS 384359 384550 . + 0 ID=Phyra94707;Parent=Phyra94707;rank=2 scaffold_22 . exon 384359 384550 . + . ID=Phyra94707.2;Parent=Phyra94707;constitutive=1;rank=2 scaffold_22 . biological_region 390554 390559 0.999 + . logic_name=eponine scaffold_22 . biological_region 390578 390584 0.999 + . logic_name=eponine scaffold_22 . biological_region 390691 390694 0.999 - . logic_name=eponine scaffold_22 . biological_region 392185 392186 0.999 - . logic_name=eponine scaffold_22 . biological_region 393646 393650 0.999 + . logic_name=eponine scaffold_22 . biological_region 393757 393758 0.999 - . logic_name=eponine scaffold_22 . biological_region 394205 394208 0.999 + . logic_name=eponine scaffold_22 . biological_region 394826 394830 0.999 - . logic_name=eponine scaffold_22 . biological_region 394909 394914 0.999 - . logic_name=eponine scaffold_22 . biological_region 395075 395078 0.999 - . logic_name=eponine scaffold_22 . biological_region 396106 396109 0.999 + . logic_name=eponine scaffold_22 . biological_region 396704 396709 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 390581 391584 . + . ID=Phyra77131;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000102;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 390581 391584 . + . ID=Phyra77131;Parent=Phyra77131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 390581 390803 . + 0 ID=Phyra77131;Parent=Phyra77131;rank=1 scaffold_22 . exon 390581 390803 . + . ID=Phyra77131.1;Parent=Phyra77131;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 390978 391031 . + 0 ID=Phyra77131;Parent=Phyra77131;rank=2 scaffold_22 . exon 390978 391031 . + . ID=Phyra77131.2;Parent=Phyra77131;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 391268 391584 . + 0 ID=Phyra77131;Parent=Phyra77131;rank=3 scaffold_22 . exon 391268 391584 . + . ID=Phyra77131.3;Parent=Phyra77131;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 ensembl protein_coding_gene 391984 392379 . + . ID=Phyra77132;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000103;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 391984 392379 . + . ID=Phyra77132;Parent=Phyra77132;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 391984 392379 . + 0 ID=Phyra77132;Parent=Phyra77132;rank=1 scaffold_22 . exon 391984 392379 . + . ID=Phyra77132.1;Parent=Phyra77132;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 392751 394340 . + . ID=Phyra77133;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000104;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 392751 394340 . + . ID=Phyra77133;Parent=Phyra77133;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 392751 392900 . + 0 ID=Phyra77133;Parent=Phyra77133;rank=1 scaffold_22 . exon 392751 392900 . + . ID=Phyra77133.1;Parent=Phyra77133;constitutive=1;rank=1 scaffold_22 . CDS 392964 394340 . + 0 ID=Phyra77133;Parent=Phyra77133;rank=2 scaffold_22 . exon 392964 394340 . + . ID=Phyra77133.2;Parent=Phyra77133;constitutive=1;rank=2 scaffold_22 ensembl protein_coding_gene 394746 398918 . + . ID=Phyra77134;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000105;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 394746 398918 . + . ID=Phyra77134;Parent=Phyra77134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 394746 396429 . + 0 ID=Phyra77134;Parent=Phyra77134;rank=1 scaffold_22 . exon 394746 396429 . + . ID=Phyra77134.1;Parent=Phyra77134;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 396574 396860 . + 0 ID=Phyra77134;Parent=Phyra77134;rank=2 scaffold_22 . exon 396574 396860 . + . ID=Phyra77134.2;Parent=Phyra77134;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 396939 398360 . + 0 ID=Phyra77134;Parent=Phyra77134;rank=3 scaffold_22 . exon 396939 398360 . + . ID=Phyra77134.3;Parent=Phyra77134;constitutive=1;rank=3 scaffold_22 . CDS 398442 398507 . + 0 ID=Phyra77134;Parent=Phyra77134;rank=4 scaffold_22 . exon 398442 398507 . + . ID=Phyra77134.4;Parent=Phyra77134;constitutive=1;rank=4 scaffold_22 . CDS 398574 398918 . + 0 ID=Phyra77134;Parent=Phyra77134;rank=5 scaffold_22 . exon 398574 398918 . + . ID=Phyra77134.5;Parent=Phyra77134;constitutive=1;rank=5 scaffold_22 ensembl protein_coding_gene 399030 400358 . - . ID=Phyra77135;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000106;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 399030 400358 . - . ID=Phyra77135;Parent=Phyra77135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 399030 400358 . - 0 ID=Phyra77135;Parent=Phyra77135;rank=1 scaffold_22 . exon 399030 400358 . - . ID=Phyra77135.1;Parent=Phyra77135;constitutive=1;rank=1 scaffold_22 . repeat_region 399530 399554 . ? . description=trf scaffold_22 . repeat_region 405149 405170 . ? . description=trf scaffold_22 ensembl protein_coding_gene 400942 402321 . + . ID=Phyra77136;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000107;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 400942 402321 . + . ID=Phyra77136;Parent=Phyra77136;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 400942 402321 . + 0 ID=Phyra77136;Parent=Phyra77136;rank=1 scaffold_22 . exon 400942 402321 . + . ID=Phyra77136.1;Parent=Phyra77136;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 402556 404289 . - . ID=Phyra77137;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000108;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 402556 404289 . - . ID=Phyra77137;Parent=Phyra77137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 402556 402595 . - 0 ID=Phyra77137;Parent=Phyra77137;rank=3 scaffold_22 . exon 402556 402595 . - . ID=Phyra77137.3;Parent=Phyra77137;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 402686 403860 . - 0 ID=Phyra77137;Parent=Phyra77137;rank=2 scaffold_22 . exon 402686 403860 . - . ID=Phyra77137.2;Parent=Phyra77137;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 403987 404289 . - 0 ID=Phyra77137;Parent=Phyra77137;rank=1 scaffold_22 . exon 403987 404289 . - . ID=Phyra77137.1;Parent=Phyra77137;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 404492 405480 . + . ID=Phyra77138;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000109;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 404492 405480 . + . ID=Phyra77138;Parent=Phyra77138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 404492 404663 . + 0 ID=Phyra77138;Parent=Phyra77138;rank=1 scaffold_22 . exon 404492 404663 . + . ID=Phyra77138.1;Parent=Phyra77138;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 404761 404832 . + 0 ID=Phyra77138;Parent=Phyra77138;rank=2 scaffold_22 . exon 404761 404832 . + . ID=Phyra77138.2;Parent=Phyra77138;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 404896 404946 . + 0 ID=Phyra77138;Parent=Phyra77138;rank=3 scaffold_22 . exon 404896 404946 . + . ID=Phyra77138.3;Parent=Phyra77138;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 405017 405096 . + 0 ID=Phyra77138;Parent=Phyra77138;rank=4 scaffold_22 . exon 405017 405096 . + . ID=Phyra77138.4;Parent=Phyra77138;constitutive=1;ensembl_phase=1;rank=4 scaffold_22 . CDS 405175 405480 . + 0 ID=Phyra77138;Parent=Phyra77138;rank=5 scaffold_22 . exon 405175 405480 . + . ID=Phyra77138.5;Parent=Phyra77138;constitutive=1;rank=5 scaffold_22 ensembl protein_coding_gene 409295 411472 . + . ID=Phyra77140;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000111;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 409295 411472 . + . ID=Phyra77140;Parent=Phyra77140;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 409295 411472 . + 0 ID=Phyra77140;Parent=Phyra77140;rank=1 scaffold_22 . exon 409295 411472 . + . ID=Phyra77140.1;Parent=Phyra77140;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 407996 409128 . - . ID=Phyra94712;biotype=protein_coding;external_name=C_scaffold_22000041;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 407996 409128 . - . ID=Phyra94712;Parent=Phyra94712;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 407996 408013 . - 0 ID=Phyra94712;Parent=Phyra94712;rank=3 scaffold_22 . exon 407996 408013 . - . ID=Phyra94712.3;Parent=Phyra94712;constitutive=1;rank=3 scaffold_22 . CDS 408148 408649 . - 0 ID=Phyra94712;Parent=Phyra94712;rank=2 scaffold_22 . exon 408148 408649 . - . ID=Phyra94712.2;Parent=Phyra94712;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 408719 409128 . - 0 ID=Phyra94712;Parent=Phyra94712;rank=1 scaffold_22 . exon 408719 409128 . - . ID=Phyra94712.1;Parent=Phyra94712;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . biological_region 409593 409596 0.999 + . logic_name=eponine scaffold_22 . biological_region 409651 409654 0.999 - . logic_name=eponine scaffold_22 . biological_region 410498 410498 0.999 - . logic_name=eponine scaffold_22 . biological_region 411283 411284 0.999 + . logic_name=eponine scaffold_22 . repeat_region 417764 417826 . ? . description=dust scaffold_22 ensembl protein_coding_gene 415460 416094 . - . ID=Phyra71487;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_22000010;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 415460 416094 . - . ID=Phyra71487;Parent=Phyra71487;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 415460 415827 . - 0 ID=Phyra71487;Parent=Phyra71487;rank=2 scaffold_22 . exon 415460 415827 . - . ID=Phyra71487.2;Parent=Phyra71487;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 416091 416094 . - 0 ID=Phyra71487;Parent=Phyra71487;rank=1 scaffold_22 . exon 416091 416094 . - . ID=Phyra71487.1;Parent=Phyra71487;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 411863 413239 . + . ID=Phyra77141;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000112;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 411863 413239 . + . ID=Phyra77141;Parent=Phyra77141;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 411863 413239 . + 0 ID=Phyra77141;Parent=Phyra77141;rank=1 scaffold_22 . exon 411863 413239 . + . ID=Phyra77141.1;Parent=Phyra77141;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 414854 415341 . + . ID=Phyra77142;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000113;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 414854 415341 . + . ID=Phyra77142;Parent=Phyra77142;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 414854 414937 . + 0 ID=Phyra77142;Parent=Phyra77142;rank=1 scaffold_22 . exon 414854 414937 . + . ID=Phyra77142.1;Parent=Phyra77142;constitutive=1;rank=1 scaffold_22 . CDS 415006 415341 . + 0 ID=Phyra77142;Parent=Phyra77142;rank=2 scaffold_22 . exon 415006 415341 . + . ID=Phyra77142.2;Parent=Phyra77142;constitutive=1;rank=2 scaffold_22 ensembl protein_coding_gene 416411 417547 . - . ID=Phyra77144;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000115;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 416411 417547 . - . ID=Phyra77144;Parent=Phyra77144;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 416411 417547 . - 0 ID=Phyra77144;Parent=Phyra77144;rank=1 scaffold_22 . exon 416411 417547 . - . ID=Phyra77144.1;Parent=Phyra77144;constitutive=1;rank=1 scaffold_22 . repeat_region 426959 426978 . ? . description=trf scaffold_22 ensembl protein_coding_gene 421266 421855 . - . ID=Phyra77145;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000116;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 421266 421855 . - . ID=Phyra77145;Parent=Phyra77145;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 421266 421328 . - 0 ID=Phyra77145;Parent=Phyra77145;rank=2 scaffold_22 . exon 421266 421328 . - . ID=Phyra77145.2;Parent=Phyra77145;constitutive=1;rank=2 scaffold_22 . CDS 421400 421855 . - 0 ID=Phyra77145;Parent=Phyra77145;rank=1 scaffold_22 . exon 421400 421855 . - . ID=Phyra77145.1;Parent=Phyra77145;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 422653 429309 . - . ID=Phyra77146;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000117;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 422653 429309 . - . ID=Phyra77146;Parent=Phyra77146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 422653 429309 . - 0 ID=Phyra77146;Parent=Phyra77146;rank=1 scaffold_22 . exon 422653 429309 . - . ID=Phyra77146.1;Parent=Phyra77146;constitutive=1;rank=1 scaffold_22 . biological_region 429576 429577 0.999 + . logic_name=eponine scaffold_22 . repeat_region 430742 430752 . ? . description=dust scaffold_22 . biological_region 436988 436991 0.999 - . logic_name=eponine scaffold_22 ensembl protein_coding_gene 436818 437300 . + . ID=Phyra44765;biotype=protein_coding;external_name=gwEuk.22.68.1;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 436818 437300 . + . ID=Phyra44765;Parent=Phyra44765;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 436818 437300 . + 0 ID=Phyra44765;Parent=Phyra44765;rank=1 scaffold_22 . exon 436818 437300 . + . ID=Phyra44765.1;Parent=Phyra44765;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 431023 432954 . - . ID=Phyra77147;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000118;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 431023 432954 . - . ID=Phyra77147;Parent=Phyra77147;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 431023 432954 . - 0 ID=Phyra77147;Parent=Phyra77147;rank=1 scaffold_22 . exon 431023 432954 . - . ID=Phyra77147.1;Parent=Phyra77147;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 433360 434657 . - . ID=Phyra77148;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000119;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 433360 434657 . - . ID=Phyra77148;Parent=Phyra77148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 433360 434655 . - 0 ID=Phyra77148;Parent=Phyra77148;rank=1 scaffold_22 . exon 433360 434657 . - . ID=Phyra77148.1;Parent=Phyra77148;constitutive=1;ensembl_phase=-1;rank=1 scaffold_22 ensembl protein_coding_gene 434993 436615 . - . ID=Phyra94718;biotype=protein_coding;external_name=C_scaffold_22000047;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 434993 436615 . - . ID=Phyra94718;Parent=Phyra94718;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 434993 436110 . - 0 ID=Phyra94718;Parent=Phyra94718;rank=3 scaffold_22 . exon 434993 436110 . - . ID=Phyra94718.3;Parent=Phyra94718;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 436180 436319 . - 0 ID=Phyra94718;Parent=Phyra94718;rank=2 scaffold_22 . exon 436180 436319 . - . ID=Phyra94718.2;Parent=Phyra94718;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 436380 436615 . - 0 ID=Phyra94718;Parent=Phyra94718;rank=1 scaffold_22 . exon 436380 436615 . - . ID=Phyra94718.1;Parent=Phyra94718;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . repeat_region 443719 443851 . ? . description=trf scaffold_22 ensembl snRNA_gene 447059 447184 . + . ID=EPrPRAG00000000093;biotype=snRNA;description=U6atac minor spliceosomal RNA [Source:RFAM%3BAcc:RF00619];external_name=U6atac;logic_name=ncrna_eg scaffold_22 ensembl snRNA 447059 447184 . + . ID=EPrPRAT00000000093;Parent=EPrPRAG00000000093;biotype=snRNA;logic_name=ncrna_eg scaffold_22 . exon 447059 447184 . + . ID=EPrPRAE00000000093;Parent=EPrPRAT00000000093;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 443617 444591 . + . ID=Phyra71489;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_22000012;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 443617 444591 . + . ID=Phyra71489;Parent=Phyra71489;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 443617 444591 . + 0 ID=Phyra71489;Parent=Phyra71489;rank=1 scaffold_22 . exon 443617 444591 . + . ID=Phyra71489.1;Parent=Phyra71489;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 445285 446850 . + . ID=Phyra94721;biotype=protein_coding;external_name=C_scaffold_22000050;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 445285 446850 . + . ID=Phyra94721;Parent=Phyra94721;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 445285 445365 . + 0 ID=Phyra94721;Parent=Phyra94721;rank=1 scaffold_22 . exon 445285 445365 . + . ID=Phyra94721.1;Parent=Phyra94721;constitutive=1;rank=1 scaffold_22 . CDS 445434 445682 . + 0 ID=Phyra94721;Parent=Phyra94721;rank=2 scaffold_22 . exon 445434 445682 . + . ID=Phyra94721.2;Parent=Phyra94721;constitutive=1;rank=2 scaffold_22 . CDS 445759 446850 . + 0 ID=Phyra94721;Parent=Phyra94721;rank=3 scaffold_22 . exon 445759 446850 . + . ID=Phyra94721.3;Parent=Phyra94721;constitutive=1;rank=3 scaffold_22 . repeat_region 449369 449413 . ? . description=dust scaffold_22 . biological_region 452314 452315 0.999 + . logic_name=eponine scaffold_22 . repeat_region 452628 452650 . ? . description=dust scaffold_22 . biological_region 452946 452951 0.999 - . logic_name=eponine scaffold_22 . biological_region 453005 453007 0.999 + . logic_name=eponine scaffold_22 . biological_region 453152 453154 0.999 + . logic_name=eponine scaffold_22 . repeat_region 458320 458369 . ? . description=dust scaffold_22 ensembl protein_coding_gene 449529 450950 . + . ID=Phyra44776;biotype=protein_coding;external_name=gwEuk.22.79.1;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 449529 450950 . + . ID=Phyra44776;Parent=Phyra44776;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 449529 450584 . + 0 ID=Phyra44776;Parent=Phyra44776;rank=1 scaffold_22 . exon 449529 450584 . + . ID=Phyra44776.1;Parent=Phyra44776;constitutive=1;rank=1 scaffold_22 . CDS 450669 450950 . + 0 ID=Phyra44776;Parent=Phyra44776;rank=2 scaffold_22 . exon 450669 450950 . + . ID=Phyra44776.2;Parent=Phyra44776;constitutive=1;rank=2 scaffold_22 ensembl protein_coding_gene 451361 452161 . - . ID=Phyra44780;biotype=protein_coding;external_name=gwEuk.22.83.1;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 451361 452161 . - . ID=Phyra44780;Parent=Phyra44780;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 451361 451528 . - 0 ID=Phyra44780;Parent=Phyra44780;rank=5 scaffold_22 . exon 451361 451528 . - . ID=Phyra44780.5;Parent=Phyra44780;constitutive=1;rank=5 scaffold_22 . CDS 451604 451723 . - 0 ID=Phyra44780;Parent=Phyra44780;rank=4 scaffold_22 . exon 451604 451723 . - . ID=Phyra44780.4;Parent=Phyra44780;constitutive=1;rank=4 scaffold_22 . CDS 451799 451870 . - 0 ID=Phyra44780;Parent=Phyra44780;rank=3 scaffold_22 . exon 451799 451870 . - . ID=Phyra44780.3;Parent=Phyra44780;constitutive=1;rank=3 scaffold_22 . CDS 451935 452003 . - 0 ID=Phyra44780;Parent=Phyra44780;rank=2 scaffold_22 . exon 451935 452003 . - . ID=Phyra44780.2;Parent=Phyra44780;constitutive=1;rank=2 scaffold_22 . CDS 452072 452161 . - 0 ID=Phyra44780;Parent=Phyra44780;rank=1 scaffold_22 . exon 452072 452161 . - . ID=Phyra44780.1;Parent=Phyra44780;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 456872 459455 . + . ID=Phyra77154;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000125;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 456872 459455 . + . ID=Phyra77154;Parent=Phyra77154;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 456872 458304 . + 0 ID=Phyra77154;Parent=Phyra77154;rank=1 scaffold_22 . exon 456872 458304 . + . ID=Phyra77154.1;Parent=Phyra77154;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 458736 459257 . + 0 ID=Phyra77154;Parent=Phyra77154;rank=2 scaffold_22 . exon 458736 459257 . + . ID=Phyra77154.2;Parent=Phyra77154;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 459431 459455 . + 0 ID=Phyra77154;Parent=Phyra77154;rank=3 scaffold_22 . repeat_region 460114 460155 . ? . description=trf scaffold_22 . exon 459431 459455 . + . ID=Phyra77154.3;Parent=Phyra77154;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 ensembl protein_coding_gene 466644 468092 . - . ID=Phyra77155;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000126;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 466644 468092 . - . ID=Phyra77155;Parent=Phyra77155;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 466644 466666 . - 0 ID=Phyra77155;Parent=Phyra77155;rank=3 scaffold_22 . exon 466644 466666 . - . ID=Phyra77155.3;Parent=Phyra77155;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 467020 467301 . - 0 ID=Phyra77155;Parent=Phyra77155;rank=2 scaffold_22 . exon 467020 467301 . - . ID=Phyra77155.2;Parent=Phyra77155;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 467354 468092 . - 0 ID=Phyra77155;Parent=Phyra77155;rank=1 scaffold_22 . exon 467354 468092 . - . ID=Phyra77155.1;Parent=Phyra77155;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . repeat_region 471219 471229 . ? . description=dust scaffold_22 . biological_region 473652 473652 0.999 + . logic_name=eponine scaffold_22 . repeat_region 476228 476241 . ? . description=dust scaffold_22 . repeat_region 477717 477726 . ? . description=dust scaffold_22 ensembl protein_coding_gene 473219 474714 . - . ID=Phyra77156;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000127;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 473219 474714 . - . ID=Phyra77156;Parent=Phyra77156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 473219 473251 . - 0 ID=Phyra77156;Parent=Phyra77156;rank=6 scaffold_22 . exon 473219 473251 . - . ID=Phyra77156.6;Parent=Phyra77156;constitutive=1;rank=6 scaffold_22 . CDS 473324 473401 . - 0 ID=Phyra77156;Parent=Phyra77156;rank=5 scaffold_22 . exon 473324 473401 . - . ID=Phyra77156.5;Parent=Phyra77156;constitutive=1;rank=5 scaffold_22 . CDS 473473 473494 . - 0 ID=Phyra77156;Parent=Phyra77156;rank=4 scaffold_22 . exon 473473 473494 . - . ID=Phyra77156.4;Parent=Phyra77156;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 473618 473673 . - 0 ID=Phyra77156;Parent=Phyra77156;rank=3 scaffold_22 . exon 473618 473673 . - . ID=Phyra77156.3;Parent=Phyra77156;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_22 . CDS 474099 474287 . - 0 ID=Phyra77156;Parent=Phyra77156;rank=2 scaffold_22 . exon 474099 474287 . - . ID=Phyra77156.2;Parent=Phyra77156;constitutive=1;rank=2 scaffold_22 . CDS 474538 474714 . - 0 ID=Phyra77156;Parent=Phyra77156;rank=1 scaffold_22 . exon 474538 474714 . - . ID=Phyra77156.1;Parent=Phyra77156;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 488843 491524 . + . ID=Phyra77157;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000128;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 488843 491524 . + . ID=Phyra77157;Parent=Phyra77157;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 488843 490260 . + 0 ID=Phyra77157;Parent=Phyra77157;rank=1 scaffold_22 . exon 488843 490260 . + . ID=Phyra77157.1;Parent=Phyra77157;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 490345 491524 . + 0 ID=Phyra77157;Parent=Phyra77157;rank=2 scaffold_22 . repeat_region 489598 489645 . ? . description=dust scaffold_22 . biological_region 491819 491820 0.999 + . logic_name=eponine scaffold_22 . exon 490345 491524 . + . ID=Phyra77157.2;Parent=Phyra77157;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 ensembl protein_coding_gene 493463 494465 . + . ID=Phyra77158;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000129;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 493463 494465 . + . ID=Phyra77158;Parent=Phyra77158;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 493463 494362 . + 0 ID=Phyra77158;Parent=Phyra77158;rank=1 scaffold_22 . exon 493463 494362 . + . ID=Phyra77158.1;Parent=Phyra77158;constitutive=1;rank=1 scaffold_22 . CDS 494448 494465 . + 0 ID=Phyra77158;Parent=Phyra77158;rank=2 scaffold_22 . exon 494448 494465 . + . ID=Phyra77158.2;Parent=Phyra77158;constitutive=1;rank=2 scaffold_22 ensembl protein_coding_gene 494630 497416 . - . ID=Phyra77159;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000130;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 494630 497416 . - . ID=Phyra77159;Parent=Phyra77159;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 494630 497416 . - 0 ID=Phyra77159;Parent=Phyra77159;rank=1 scaffold_22 . exon 494630 497416 . - . ID=Phyra77159.1;Parent=Phyra77159;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 497842 502248 . - . ID=Phyra77160;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000131;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 497842 502248 . - . ID=Phyra77160;Parent=Phyra77160;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 497842 498246 . - 0 ID=Phyra77160;Parent=Phyra77160;rank=6 scaffold_22 . exon 497842 498246 . - . ID=Phyra77160.6;Parent=Phyra77160;constitutive=1;rank=6 scaffold_22 . CDS 498282 498907 . - 0 ID=Phyra77160;Parent=Phyra77160;rank=5 scaffold_22 . exon 498282 498907 . - . ID=Phyra77160.5;Parent=Phyra77160;constitutive=1;ensembl_phase=1;rank=5 scaffold_22 . CDS 499143 499201 . - 0 ID=Phyra77160;Parent=Phyra77160;rank=4 scaffold_22 . exon 499143 499201 . - . ID=Phyra77160.4;Parent=Phyra77160;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 499422 501791 . - 0 ID=Phyra77160;Parent=Phyra77160;rank=3 scaffold_22 . CDS 501855 501891 . - 0 ID=Phyra77160;Parent=Phyra77160;rank=2 scaffold_22 . CDS 502149 502248 . - 0 ID=Phyra77160;Parent=Phyra77160;rank=1 scaffold_22 . exon 499422 501791 . - . ID=Phyra77160.3;Parent=Phyra77160;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_22 . exon 501855 501891 . - . ID=Phyra77160.2;Parent=Phyra77160;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_22 . exon 502149 502248 . - . ID=Phyra77160.1;Parent=Phyra77160;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 505911 508537 . + . ID=Phyra77161;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000132;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 505911 508537 . + . ID=Phyra77161;Parent=Phyra77161;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 505911 506110 . + 0 ID=Phyra77161;Parent=Phyra77161;rank=1 scaffold_22 . exon 505911 506110 . + . ID=Phyra77161.1;Parent=Phyra77161;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 506174 506314 . + 0 ID=Phyra77161;Parent=Phyra77161;rank=2 scaffold_22 . exon 506174 506314 . + . ID=Phyra77161.2;Parent=Phyra77161;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 506400 507732 . + 0 ID=Phyra77161;Parent=Phyra77161;rank=3 scaffold_22 . exon 506400 507732 . + . ID=Phyra77161.3;Parent=Phyra77161;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 507806 507880 . + 0 ID=Phyra77161;Parent=Phyra77161;rank=4 scaffold_22 . exon 507806 507880 . + . ID=Phyra77161.4;Parent=Phyra77161;constitutive=1;rank=4 scaffold_22 . CDS 507956 508537 . + 0 ID=Phyra77161;Parent=Phyra77161;rank=5 scaffold_22 . exon 507956 508537 . + . ID=Phyra77161.5;Parent=Phyra77161;constitutive=1;rank=5 scaffold_22 ensembl protein_coding_gene 508760 509422 . + . ID=Phyra77162;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000133;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 508760 509422 . + . ID=Phyra77162;Parent=Phyra77162;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 508760 509422 . + 0 ID=Phyra77162;Parent=Phyra77162;rank=1 scaffold_22 . exon 508760 509422 . + . ID=Phyra77162.1;Parent=Phyra77162;constitutive=1;rank=1 scaffold_22 . repeat_region 509559 509566 . ? . description=dust scaffold_22 . repeat_region 513158 513210 . ? . description=trf scaffold_22 . biological_region 513225 513227 0.999 + . logic_name=eponine scaffold_22 . biological_region 513689 513690 0.999 - . logic_name=eponine scaffold_22 . repeat_region 514903 514933 . ? . description=dust scaffold_22 . repeat_region 515096 515104 . ? . description=dust scaffold_22 . repeat_region 516761 516805 . ? . description=trf scaffold_22 . biological_region 516837 516844 0.999 - . logic_name=eponine scaffold_22 . biological_region 516942 516946 0.999 - . logic_name=eponine scaffold_22 . repeat_region 517724 517777 . ? . description=trf scaffold_22 . biological_region 518376 518378 0.999 + . logic_name=eponine scaffold_22 . biological_region 518464 518466 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 518140 518781 . + . ID=Phyra71490;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_22000013;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 518140 518781 . + . ID=Phyra71490;Parent=Phyra71490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 518140 518781 . + 0 ID=Phyra71490;Parent=Phyra71490;rank=1 scaffold_22 . exon 518140 518781 . + . ID=Phyra71490.1;Parent=Phyra71490;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 511791 512267 . + . ID=Phyra77163;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000134;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 511791 512267 . + . ID=Phyra77163;Parent=Phyra77163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 511791 512267 . + 0 ID=Phyra77163;Parent=Phyra77163;rank=1 scaffold_22 . exon 511791 512267 . + . ID=Phyra77163.1;Parent=Phyra77163;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 512368 513669 . - . ID=Phyra77164;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000135;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 512368 513669 . - . ID=Phyra77164;Parent=Phyra77164;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 512368 513669 . - 0 ID=Phyra77164;Parent=Phyra77164;rank=1 scaffold_22 . exon 512368 513669 . - . ID=Phyra77164.1;Parent=Phyra77164;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 514206 515766 . + . ID=Phyra77165;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000136;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 514206 515766 . + . ID=Phyra77165;Parent=Phyra77165;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 514206 514394 . + 0 ID=Phyra77165;Parent=Phyra77165;rank=1 scaffold_22 . exon 514206 514394 . + . ID=Phyra77165.1;Parent=Phyra77165;constitutive=1;rank=1 scaffold_22 . CDS 514461 514592 . + 0 ID=Phyra77165;Parent=Phyra77165;rank=2 scaffold_22 . exon 514461 514592 . + . ID=Phyra77165.2;Parent=Phyra77165;constitutive=1;rank=2 scaffold_22 . CDS 514675 514719 . + 0 ID=Phyra77165;Parent=Phyra77165;rank=3 scaffold_22 . exon 514675 514719 . + . ID=Phyra77165.3;Parent=Phyra77165;constitutive=1;rank=3 scaffold_22 . CDS 514790 514891 . + 0 ID=Phyra77165;Parent=Phyra77165;rank=4 scaffold_22 . exon 514790 514891 . + . ID=Phyra77165.4;Parent=Phyra77165;constitutive=1;rank=4 scaffold_22 . CDS 514961 515046 . + 0 ID=Phyra77165;Parent=Phyra77165;rank=5 scaffold_22 . exon 514961 515046 . + . ID=Phyra77165.5;Parent=Phyra77165;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_22 . CDS 515429 515551 . + 0 ID=Phyra77165;Parent=Phyra77165;rank=6 scaffold_22 . exon 515429 515551 . + . ID=Phyra77165.6;Parent=Phyra77165;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_22 . CDS 515692 515735 . + 0 ID=Phyra77165;Parent=Phyra77165;rank=7 scaffold_22 . exon 515692 515735 . + . ID=Phyra77165.7;Parent=Phyra77165;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_22 . CDS 515756 515766 . + 0 ID=Phyra77165;Parent=Phyra77165;rank=8 scaffold_22 . exon 515756 515766 . + . ID=Phyra77165.8;Parent=Phyra77165;constitutive=1;ensembl_phase=1;rank=8 scaffold_22 ensembl protein_coding_gene 516179 517642 . - . ID=Phyra77166;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000137;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 516179 517642 . - . ID=Phyra77166;Parent=Phyra77166;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 516179 517642 . - 0 ID=Phyra77166;Parent=Phyra77166;rank=1 scaffold_22 . exon 516179 517642 . - . ID=Phyra77166.1;Parent=Phyra77166;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 519004 519933 . - . ID=Phyra77168;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000139;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 519004 519933 . - . ID=Phyra77168;Parent=Phyra77168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 519004 519134 . - 0 ID=Phyra77168;Parent=Phyra77168;rank=4 scaffold_22 . exon 519004 519134 . - . ID=Phyra77168.4;Parent=Phyra77168;constitutive=1;ensembl_phase=1;rank=4 scaffold_22 . CDS 519207 519320 . - 0 ID=Phyra77168;Parent=Phyra77168;rank=3 scaffold_22 . CDS 519418 519813 . - 0 ID=Phyra77168;Parent=Phyra77168;rank=2 scaffold_22 . CDS 519885 519933 . - 0 ID=Phyra77168;Parent=Phyra77168;rank=1 scaffold_22 . exon 519207 519320 . - . ID=Phyra77168.3;Parent=Phyra77168;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_22 . exon 519418 519813 . - . ID=Phyra77168.2;Parent=Phyra77168;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_22 . exon 519885 519933 . - . ID=Phyra77168.1;Parent=Phyra77168;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 521284 522465 . + . ID=Phyra77169;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000140;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 521284 522465 . + . ID=Phyra77169;Parent=Phyra77169;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 521284 522465 . + 0 ID=Phyra77169;Parent=Phyra77169;rank=1 scaffold_22 . exon 521284 522465 . + . ID=Phyra77169.1;Parent=Phyra77169;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 523175 524377 . - . ID=Phyra77170;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000141;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 523175 524377 . - . ID=Phyra77170;Parent=Phyra77170;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 523175 524377 . - 0 ID=Phyra77170;Parent=Phyra77170;rank=1 scaffold_22 . exon 523175 524377 . - . ID=Phyra77170.1;Parent=Phyra77170;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 525212 526498 . + . ID=Phyra77171;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000142;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 525212 526498 . + . ID=Phyra77171;Parent=Phyra77171;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 525212 526498 . + 0 ID=Phyra77171;Parent=Phyra77171;rank=1 scaffold_22 . exon 525212 526498 . + . ID=Phyra77171.1;Parent=Phyra77171;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 526828 528102 . + . ID=Phyra77172;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000143;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 526828 528102 . + . ID=Phyra77172;Parent=Phyra77172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 526828 528102 . + 0 ID=Phyra77172;Parent=Phyra77172;rank=1 scaffold_22 . exon 526828 528102 . + . ID=Phyra77172.1;Parent=Phyra77172;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 529136 530398 . + . ID=Phyra77173;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000144;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 529136 530398 . + . ID=Phyra77173;Parent=Phyra77173;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 529136 530398 . + 0 ID=Phyra77173;Parent=Phyra77173;rank=1 scaffold_22 . exon 529136 530398 . + . ID=Phyra77173.1;Parent=Phyra77173;constitutive=1;rank=1 scaffold_22 . biological_region 530883 530889 0.999 + . logic_name=eponine scaffold_22 . biological_region 532620 532622 0.999 + . logic_name=eponine scaffold_22 . biological_region 535974 535979 0.999 + . logic_name=eponine scaffold_22 . repeat_region 536237 536244 . ? . description=dust scaffold_22 . repeat_region 537809 537832 . ? . description=trf scaffold_22 ensembl protein_coding_gene 531419 532576 . + . ID=Phyra77174;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000145;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 531419 532576 . + . ID=Phyra77174;Parent=Phyra77174;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 531419 532576 . + 0 ID=Phyra77174;Parent=Phyra77174;rank=1 scaffold_22 . exon 531419 532576 . + . ID=Phyra77174.1;Parent=Phyra77174;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 535579 536113 . - . ID=Phyra77175;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000146;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 535579 536113 . - . ID=Phyra77175;Parent=Phyra77175;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 535579 535603 . - 0 ID=Phyra77175;Parent=Phyra77175;rank=4 scaffold_22 . exon 535579 535603 . - . ID=Phyra77175.4;Parent=Phyra77175;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 535668 535680 . - 0 ID=Phyra77175;Parent=Phyra77175;rank=3 scaffold_22 . exon 535668 535680 . - . ID=Phyra77175.3;Parent=Phyra77175;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_22 . CDS 535760 535820 . - 0 ID=Phyra77175;Parent=Phyra77175;rank=2 scaffold_22 . exon 535760 535820 . - . ID=Phyra77175.2;Parent=Phyra77175;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 . CDS 535889 536113 . - 0 ID=Phyra77175;Parent=Phyra77175;rank=1 scaffold_22 . exon 535889 536113 . - . ID=Phyra77175.1;Parent=Phyra77175;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 536260 537485 . + . ID=Phyra77176;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000147;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 536260 537485 . + . ID=Phyra77176;Parent=Phyra77176;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 536260 537381 . + 0 ID=Phyra77176;Parent=Phyra77176;rank=1 scaffold_22 . exon 536260 537381 . + . ID=Phyra77176.1;Parent=Phyra77176;constitutive=1;rank=1 scaffold_22 . CDS 537477 537485 . + 0 ID=Phyra77176;Parent=Phyra77176;rank=2 scaffold_22 . exon 537477 537485 . + . ID=Phyra77176.2;Parent=Phyra77176;constitutive=1;rank=2 scaffold_22 ensembl protein_coding_gene 538483 539350 . - . ID=Phyra77177;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000148;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 538483 539350 . - . ID=Phyra77177;Parent=Phyra77177;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 538483 538578 . - 0 ID=Phyra77177;Parent=Phyra77177;rank=4 scaffold_22 . exon 538483 538578 . - . ID=Phyra77177.4;Parent=Phyra77177;constitutive=1;rank=4 scaffold_22 . CDS 538656 538764 . - 0 ID=Phyra77177;Parent=Phyra77177;rank=3 scaffold_22 . exon 538656 538764 . - . ID=Phyra77177.3;Parent=Phyra77177;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 538820 538927 . - 0 ID=Phyra77177;Parent=Phyra77177;rank=2 scaffold_22 . exon 538820 538927 . - . ID=Phyra77177.2;Parent=Phyra77177;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 539007 539350 . - 0 ID=Phyra77177;Parent=Phyra77177;rank=1 scaffold_22 . exon 539007 539350 . - . ID=Phyra77177.1;Parent=Phyra77177;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 540794 541171 . - . ID=Phyra77178;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000149;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 540794 541171 . - . ID=Phyra77178;Parent=Phyra77178;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 540794 541171 . - 0 ID=Phyra77178;Parent=Phyra77178;rank=1 scaffold_22 . exon 540794 541171 . - . ID=Phyra77178.1;Parent=Phyra77178;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 541462 543438 . - . ID=Phyra77179;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000150;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 541462 543438 . - . ID=Phyra77179;Parent=Phyra77179;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 541462 543131 . - 0 ID=Phyra77179;Parent=Phyra77179;rank=2 scaffold_22 . exon 541462 543131 . - . ID=Phyra77179.2;Parent=Phyra77179;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 543288 543438 . - 0 ID=Phyra77179;Parent=Phyra77179;rank=1 scaffold_22 . exon 543288 543438 . - . ID=Phyra77179.1;Parent=Phyra77179;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 547469 549544 . + . ID=Phyra77180;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000151;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 547469 549544 . + . ID=Phyra77180;Parent=Phyra77180;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 547469 549544 . + 0 ID=Phyra77180;Parent=Phyra77180;rank=1 scaffold_22 . exon 547469 549544 . + . ID=Phyra77180.1;Parent=Phyra77180;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 549679 551532 . - . ID=Phyra77181;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000152;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 549679 551532 . - . ID=Phyra77181;Parent=Phyra77181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 549679 551532 . - 0 ID=Phyra77181;Parent=Phyra77181;rank=1 scaffold_22 . exon 549679 551532 . - . ID=Phyra77181.1;Parent=Phyra77181;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 552204 554279 . - . ID=Phyra77182;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000153;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 552204 554279 . - . ID=Phyra77182;Parent=Phyra77182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 552204 554279 . - 0 ID=Phyra77182;Parent=Phyra77182;rank=1 scaffold_22 . exon 552204 554279 . - . ID=Phyra77182.1;Parent=Phyra77182;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 554943 557015 . - . ID=Phyra77183;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000154;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 554943 557015 . - . ID=Phyra77183;Parent=Phyra77183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 554943 556822 . - 0 ID=Phyra77183;Parent=Phyra77183;rank=3 scaffold_22 . exon 554943 556822 . - . ID=Phyra77183.3;Parent=Phyra77183;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 556858 556876 . - 0 ID=Phyra77183;Parent=Phyra77183;rank=2 scaffold_22 . exon 556858 556876 . - . ID=Phyra77183.2;Parent=Phyra77183;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 . CDS 556986 557015 . - 0 ID=Phyra77183;Parent=Phyra77183;rank=1 scaffold_22 . exon 556986 557015 . - . ID=Phyra77183.1;Parent=Phyra77183;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 557594 558562 . - . ID=Phyra77184;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000155;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 557594 558562 . - . ID=Phyra77184;Parent=Phyra77184;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 557594 558562 . - 0 ID=Phyra77184;Parent=Phyra77184;rank=1 scaffold_22 . exon 557594 558562 . - . ID=Phyra77184.1;Parent=Phyra77184;constitutive=1;rank=1 scaffold_22 . biological_region 565284 565289 0.999 - . logic_name=eponine scaffold_22 . repeat_region 568859 569004 . ? . description=dust scaffold_22 . repeat_region 568890 568991 . ? . description=trf scaffold_22 . repeat_region 568920 568960 . ? . description=trf scaffold_22 . repeat_region 568920 568962 . ? . description=trf scaffold_22 . repeat_region 568952 568991 . ? . description=trf scaffold_22 ensembl protein_coding_gene 561663 563507 . - . ID=Phyra77185;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000156;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 561663 563507 . - . ID=Phyra77185;Parent=Phyra77185;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 561663 563507 . - 0 ID=Phyra77185;Parent=Phyra77185;rank=1 scaffold_22 . exon 561663 563507 . - . ID=Phyra77185.1;Parent=Phyra77185;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 564680 565369 . + . ID=Phyra77186;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000157;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 564680 565369 . + . ID=Phyra77186;Parent=Phyra77186;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 564680 565369 . + 0 ID=Phyra77186;Parent=Phyra77186;rank=1 scaffold_22 . exon 564680 565369 . + . ID=Phyra77186.1;Parent=Phyra77186;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 565680 566363 . + . ID=Phyra77187;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000158;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 565680 566363 . + . ID=Phyra77187;Parent=Phyra77187;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 565680 566363 . + 0 ID=Phyra77187;Parent=Phyra77187;rank=1 scaffold_22 . exon 565680 566363 . + . ID=Phyra77187.1;Parent=Phyra77187;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 566455 567411 . - . ID=Phyra77188;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_22000159;logic_name=jgi_phyra1 scaffold_22 ensembl transcript 566455 567411 . - . ID=Phyra77188;Parent=Phyra77188;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_22 . CDS 566455 567411 . - 0 ID=Phyra77188;Parent=Phyra77188;rank=1 scaffold_22 . exon 566455 567411 . - . ID=Phyra77188.1;Parent=Phyra77188;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_23 1 570991 scaffold_23 . repeat_region 8092 8105 . ? . description=dust scaffold_23 ensembl protein_coding_gene 3926 4183 . + . ID=Phyra45082;biotype=protein_coding;external_name=gwEuk.23.115.1;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 3926 4183 . + . ID=Phyra45082;Parent=Phyra45082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 3926 4183 . + 0 ID=Phyra45082;Parent=Phyra45082;rank=1 scaffold_23 . exon 3926 4183 . + . ID=Phyra45082.1;Parent=Phyra45082;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 1118 2421 . + . ID=Phyra77189;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000001;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 1118 2421 . + . ID=Phyra77189;Parent=Phyra77189;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 1118 2181 . + 0 ID=Phyra77189;Parent=Phyra77189;rank=1 scaffold_23 . exon 1118 2181 . + . ID=Phyra77189.1;Parent=Phyra77189;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 2325 2421 . + 0 ID=Phyra77189;Parent=Phyra77189;rank=2 scaffold_23 . exon 2325 2421 . + . ID=Phyra77189.2;Parent=Phyra77189;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 ensembl protein_coding_gene 6455 7518 . - . ID=Phyra77190;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000002;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 6455 7518 . - . ID=Phyra77190;Parent=Phyra77190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 6455 6792 . - 0 ID=Phyra77190;Parent=Phyra77190;rank=4 scaffold_23 . exon 6455 6792 . - . ID=Phyra77190.4;Parent=Phyra77190;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 6884 7061 . - 0 ID=Phyra77190;Parent=Phyra77190;rank=3 scaffold_23 . exon 6884 7061 . - . ID=Phyra77190.3;Parent=Phyra77190;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_23 . CDS 7146 7301 . - 0 ID=Phyra77190;Parent=Phyra77190;rank=2 scaffold_23 . exon 7146 7301 . - . ID=Phyra77190.2;Parent=Phyra77190;constitutive=1;rank=2 scaffold_23 . CDS 7378 7518 . - 0 ID=Phyra77190;Parent=Phyra77190;rank=1 scaffold_23 . exon 7378 7518 . - . ID=Phyra77190.1;Parent=Phyra77190;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 8142 12116 . - . ID=Phyra94725;biotype=protein_coding;external_name=C_scaffold_23000001;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 8142 12116 . - . ID=Phyra94725;Parent=Phyra94725;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 8142 8408 . - 0 ID=Phyra94725;Parent=Phyra94725;rank=12 scaffold_23 . exon 8142 8408 . - . ID=Phyra94725.12;Parent=Phyra94725;constitutive=1;rank=12 scaffold_23 . CDS 8489 8779 . - 0 ID=Phyra94725;Parent=Phyra94725;rank=11 scaffold_23 . exon 8489 8779 . - . ID=Phyra94725.11;Parent=Phyra94725;constitutive=1;rank=11 scaffold_23 . CDS 8844 9023 . - 0 ID=Phyra94725;Parent=Phyra94725;rank=10 scaffold_23 . exon 8844 9023 . - . ID=Phyra94725.10;Parent=Phyra94725;constitutive=1;rank=10 scaffold_23 . CDS 9088 9300 . - 0 ID=Phyra94725;Parent=Phyra94725;rank=9 scaffold_23 . exon 9088 9300 . - . ID=Phyra94725.9;Parent=Phyra94725;constitutive=1;rank=9 scaffold_23 . CDS 9522 9767 . - 0 ID=Phyra94725;Parent=Phyra94725;rank=8 scaffold_23 . exon 9522 9767 . - . ID=Phyra94725.8;Parent=Phyra94725;constitutive=1;rank=8 scaffold_23 . CDS 9835 10131 . - 0 ID=Phyra94725;Parent=Phyra94725;rank=7 scaffold_23 . exon 9835 10131 . - . ID=Phyra94725.7;Parent=Phyra94725;constitutive=1;rank=7 scaffold_23 . CDS 10219 10398 . - 0 ID=Phyra94725;Parent=Phyra94725;rank=6 scaffold_23 . CDS 10500 10731 . - 0 ID=Phyra94725;Parent=Phyra94725;rank=5 scaffold_23 . CDS 10952 11178 . - 0 ID=Phyra94725;Parent=Phyra94725;rank=4 scaffold_23 . CDS 11245 11520 . - 0 ID=Phyra94725;Parent=Phyra94725;rank=3 scaffold_23 . CDS 11609 11788 . - 0 ID=Phyra94725;Parent=Phyra94725;rank=2 scaffold_23 . CDS 11859 12116 . - 0 ID=Phyra94725;Parent=Phyra94725;rank=1 scaffold_23 . biological_region 11754 11755 0.999 - . logic_name=eponine scaffold_23 . biological_region 17509 17513 0.999 - . logic_name=eponine scaffold_23 . biological_region 18384 18385 0.999 - . logic_name=eponine scaffold_23 . biological_region 19498 19500 0.999 - . logic_name=eponine scaffold_23 ensembl protein_coding_gene 17586 19484 . + . ID=Phyra77192;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000004;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 17586 19484 . + . ID=Phyra77192;Parent=Phyra77192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 17586 19484 . + 0 ID=Phyra77192;Parent=Phyra77192;rank=1 scaffold_23 . exon 17586 19484 . + . ID=Phyra77192.1;Parent=Phyra77192;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 19659 21489 . - . ID=Phyra77193;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000005;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 19659 21489 . - . ID=Phyra77193;Parent=Phyra77193;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 19659 20142 . - 0 ID=Phyra77193;Parent=Phyra77193;rank=7 scaffold_23 . exon 19659 20142 . - . ID=Phyra77193.7;Parent=Phyra77193;constitutive=1;ensembl_phase=2;rank=7 scaffold_23 . CDS 20249 20303 . - 0 ID=Phyra77193;Parent=Phyra77193;rank=6 scaffold_23 . CDS 20346 20585 . - 0 ID=Phyra77193;Parent=Phyra77193;rank=5 scaffold_23 . CDS 20651 20875 . - 0 ID=Phyra77193;Parent=Phyra77193;rank=4 scaffold_23 . CDS 20947 21037 . - 0 ID=Phyra77193;Parent=Phyra77193;rank=3 scaffold_23 . CDS 21274 21335 . - 0 ID=Phyra77193;Parent=Phyra77193;rank=2 scaffold_23 . CDS 21402 21489 . - 0 ID=Phyra77193;Parent=Phyra77193;rank=1 scaffold_23 . exon 10219 10398 . - . ID=Phyra94725.6;Parent=Phyra94725;constitutive=1;rank=6 scaffold_23 . exon 10500 10731 . - . ID=Phyra94725.5;Parent=Phyra94725;constitutive=1;ensembl_phase=2;rank=5 scaffold_23 . exon 10952 11178 . - . ID=Phyra94725.4;Parent=Phyra94725;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_23 . exon 11245 11520 . - . ID=Phyra94725.3;Parent=Phyra94725;constitutive=1;rank=3 scaffold_23 . exon 11609 11788 . - . ID=Phyra94725.2;Parent=Phyra94725;constitutive=1;rank=2 scaffold_23 . exon 11859 12116 . - . ID=Phyra94725.1;Parent=Phyra94725;constitutive=1;rank=1 scaffold_23 . repeat_region 24980 25794 . ? . description=trf scaffold_23 . exon 20249 20303 . - . ID=Phyra77193.6;Parent=Phyra77193;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_23 . exon 20346 20585 . - . ID=Phyra77193.5;Parent=Phyra77193;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_23 . exon 20651 20875 . - . ID=Phyra77193.4;Parent=Phyra77193;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_23 . exon 20947 21037 . - . ID=Phyra77193.3;Parent=Phyra77193;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_23 . exon 21274 21335 . - . ID=Phyra77193.2;Parent=Phyra77193;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . exon 21402 21489 . - . ID=Phyra77193.1;Parent=Phyra77193;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 27992 30046 . - . ID=Phyra77196;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000008;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 27992 30046 . - . ID=Phyra77196;Parent=Phyra77196;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 27992 30046 . - 0 ID=Phyra77196;Parent=Phyra77196;rank=1 scaffold_23 . exon 27992 30046 . - . ID=Phyra77196.1;Parent=Phyra77196;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 21637 26907 . + . ID=Phyra94733;biotype=protein_coding;external_name=C_scaffold_23000009;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 21637 26907 . + . ID=Phyra94733;Parent=Phyra94733;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 21637 22188 . + 0 ID=Phyra94733;Parent=Phyra94733;rank=1 scaffold_23 . exon 21637 22188 . + . ID=Phyra94733.1;Parent=Phyra94733;constitutive=1;rank=1 scaffold_23 . CDS 22256 22397 . + 0 ID=Phyra94733;Parent=Phyra94733;rank=2 scaffold_23 . exon 22256 22397 . + . ID=Phyra94733.2;Parent=Phyra94733;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_23 . CDS 22440 23469 . + 0 ID=Phyra94733;Parent=Phyra94733;rank=3 scaffold_23 . exon 22440 23469 . + . ID=Phyra94733.3;Parent=Phyra94733;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_23 . CDS 23596 23950 . + 0 ID=Phyra94733;Parent=Phyra94733;rank=4 scaffold_23 . exon 23596 23950 . + . ID=Phyra94733.4;Parent=Phyra94733;constitutive=1;ensembl_phase=2;rank=4 scaffold_23 . CDS 24289 24735 . + 0 ID=Phyra94733;Parent=Phyra94733;rank=5 scaffold_23 . exon 24289 24735 . + . ID=Phyra94733.5;Parent=Phyra94733;constitutive=1;rank=5 scaffold_23 . CDS 24813 26537 . + 0 ID=Phyra94733;Parent=Phyra94733;rank=6 scaffold_23 . exon 24813 26537 . + . ID=Phyra94733.6;Parent=Phyra94733;constitutive=1;rank=6 scaffold_23 . CDS 26565 26750 . + 0 ID=Phyra94733;Parent=Phyra94733;rank=7 scaffold_23 . exon 26565 26750 . + . ID=Phyra94733.7;Parent=Phyra94733;constitutive=1;rank=7 scaffold_23 . CDS 26824 26907 . + 0 ID=Phyra94733;Parent=Phyra94733;rank=8 scaffold_23 . exon 26824 26907 . + . ID=Phyra94733.8;Parent=Phyra94733;constitutive=1;rank=8 scaffold_23 . biological_region 29715 29718 0.999 + . logic_name=eponine scaffold_23 . biological_region 32628 32631 0.999 - . logic_name=eponine scaffold_23 . biological_region 38977 38978 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 30200 31341 . + . ID=Phyra77197;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000009;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 30200 31341 . + . ID=Phyra77197;Parent=Phyra77197;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 30200 30487 . + 0 ID=Phyra77197;Parent=Phyra77197;rank=1 scaffold_23 . exon 30200 30487 . + . ID=Phyra77197.1;Parent=Phyra77197;constitutive=1;rank=1 scaffold_23 . CDS 30632 31156 . + 0 ID=Phyra77197;Parent=Phyra77197;rank=2 scaffold_23 . exon 30632 31156 . + . ID=Phyra77197.2;Parent=Phyra77197;constitutive=1;rank=2 scaffold_23 . CDS 31273 31341 . + 0 ID=Phyra77197;Parent=Phyra77197;rank=3 scaffold_23 . exon 31273 31341 . + . ID=Phyra77197.3;Parent=Phyra77197;constitutive=1;rank=3 scaffold_23 ensembl protein_coding_gene 36917 37780 . - . ID=Phyra77198;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000010;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 36917 37780 . - . ID=Phyra77198;Parent=Phyra77198;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 36917 37088 . - 0 ID=Phyra77198;Parent=Phyra77198;rank=2 scaffold_23 . exon 36917 37088 . - . ID=Phyra77198.2;Parent=Phyra77198;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 37149 37780 . - 0 ID=Phyra77198;Parent=Phyra77198;rank=1 scaffold_23 . exon 37149 37780 . - . ID=Phyra77198.1;Parent=Phyra77198;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 ensembl protein_coding_gene 38099 39080 . - . ID=Phyra77199;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000011;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 38099 39080 . - . ID=Phyra77199;Parent=Phyra77199;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 38099 38261 . - 0 ID=Phyra77199;Parent=Phyra77199;rank=2 scaffold_23 . exon 38099 38261 . - . ID=Phyra77199.2;Parent=Phyra77199;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 38335 39080 . - 0 ID=Phyra77199;Parent=Phyra77199;rank=1 scaffold_23 . exon 38335 39080 . - . ID=Phyra77199.1;Parent=Phyra77199;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . repeat_region 39753 39763 . ? . description=dust scaffold_23 . repeat_region 39937 39964 . ? . description=trf scaffold_23 . repeat_region 39937 39964 . ? . description=dust scaffold_23 . repeat_region 42163 42176 . ? . description=dust scaffold_23 . repeat_region 48346 48394 . ? . description=trf scaffold_23 ensembl protein_coding_gene 40173 41245 . + . ID=Phyra77200;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000012;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 40173 41245 . + . ID=Phyra77200;Parent=Phyra77200;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 40173 40781 . + 0 ID=Phyra77200;Parent=Phyra77200;rank=1 scaffold_23 . exon 40173 40781 . + . ID=Phyra77200.1;Parent=Phyra77200;constitutive=1;rank=1 scaffold_23 . CDS 40863 41087 . + 0 ID=Phyra77200;Parent=Phyra77200;rank=2 scaffold_23 . exon 40863 41087 . + . ID=Phyra77200.2;Parent=Phyra77200;constitutive=1;rank=2 scaffold_23 . CDS 41156 41245 . + 0 ID=Phyra77200;Parent=Phyra77200;rank=3 scaffold_23 . exon 41156 41245 . + . ID=Phyra77200.3;Parent=Phyra77200;constitutive=1;rank=3 scaffold_23 ensembl protein_coding_gene 42200 44566 . + . ID=Phyra77201;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000013;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 42200 44566 . + . ID=Phyra77201;Parent=Phyra77201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 42200 44566 . + 0 ID=Phyra77201;Parent=Phyra77201;rank=1 scaffold_23 . exon 42200 44566 . + . ID=Phyra77201.1;Parent=Phyra77201;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 47262 49420 . - . ID=Phyra94734;biotype=protein_coding;external_name=C_scaffold_23000010;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 47262 49420 . - . ID=Phyra94734;Parent=Phyra94734;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 47262 47346 . - 0 ID=Phyra94734;Parent=Phyra94734;rank=6 scaffold_23 . exon 47262 47346 . - . ID=Phyra94734.6;Parent=Phyra94734;constitutive=1;ensembl_phase=2;rank=6 scaffold_23 . CDS 47405 47634 . - 0 ID=Phyra94734;Parent=Phyra94734;rank=5 scaffold_23 . exon 47405 47634 . - . ID=Phyra94734.5;Parent=Phyra94734;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_23 . CDS 47788 47962 . - 0 ID=Phyra94734;Parent=Phyra94734;rank=4 scaffold_23 . exon 47788 47962 . - . ID=Phyra94734.4;Parent=Phyra94734;constitutive=1;ensembl_phase=2;rank=4 scaffold_23 . CDS 48043 48068 . - 0 ID=Phyra94734;Parent=Phyra94734;rank=3 scaffold_23 . exon 48043 48068 . - . ID=Phyra94734.3;Parent=Phyra94734;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_23 . CDS 48460 49176 . - 0 ID=Phyra94734;Parent=Phyra94734;rank=2 scaffold_23 . exon 48460 49176 . - . ID=Phyra94734.2;Parent=Phyra94734;constitutive=1;rank=2 scaffold_23 . CDS 49322 49420 . - 0 ID=Phyra94734;Parent=Phyra94734;rank=1 scaffold_23 . biological_region 51743 51752 0.999 + . logic_name=eponine scaffold_23 . biological_region 51901 51905 0.999 - . logic_name=eponine scaffold_23 . biological_region 55398 55401 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 56492 58231 . - . ID=Phyra45104;biotype=protein_coding;external_name=gwEuk.23.137.1;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 56492 58231 . - . ID=Phyra45104;Parent=Phyra45104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 56492 56680 . - 0 ID=Phyra45104;Parent=Phyra45104;rank=5 scaffold_23 . exon 56492 56680 . - . ID=Phyra45104.5;Parent=Phyra45104;constitutive=1;rank=5 scaffold_23 . CDS 56761 56997 . - 0 ID=Phyra45104;Parent=Phyra45104;rank=4 scaffold_23 . exon 56761 56997 . - . ID=Phyra45104.4;Parent=Phyra45104;constitutive=1;rank=4 scaffold_23 . CDS 57065 57384 . - 0 ID=Phyra45104;Parent=Phyra45104;rank=3 scaffold_23 . exon 57065 57384 . - . ID=Phyra45104.3;Parent=Phyra45104;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 57556 57728 . - 0 ID=Phyra45104;Parent=Phyra45104;rank=2 scaffold_23 . exon 57556 57728 . - . ID=Phyra45104.2;Parent=Phyra45104;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 57798 58231 . - 0 ID=Phyra45104;Parent=Phyra45104;rank=1 scaffold_23 . exon 57798 58231 . - . ID=Phyra45104.1;Parent=Phyra45104;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 ensembl protein_coding_gene 50690 51478 . - . ID=Phyra71491;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_23000001;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 50690 51478 . - . ID=Phyra71491;Parent=Phyra71491;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 50690 51478 . - 0 ID=Phyra71491;Parent=Phyra71491;rank=1 scaffold_23 . exon 50690 51478 . - . ID=Phyra71491.1;Parent=Phyra71491;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 49753 50368 . + . ID=Phyra77203;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000015;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 49753 50368 . + . ID=Phyra77203;Parent=Phyra77203;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 49753 49895 . + 0 ID=Phyra77203;Parent=Phyra77203;rank=1 scaffold_23 . exon 49753 49895 . + . ID=Phyra77203.1;Parent=Phyra77203;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 49990 49992 . + 0 ID=Phyra77203;Parent=Phyra77203;rank=2 scaffold_23 . exon 49990 49992 . + . ID=Phyra77203.2;Parent=Phyra77203;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_23 . CDS 50071 50368 . + 0 ID=Phyra77203;Parent=Phyra77203;rank=3 scaffold_23 . exon 50071 50368 . + . ID=Phyra77203.3;Parent=Phyra77203;constitutive=1;ensembl_phase=2;rank=3 scaffold_23 ensembl protein_coding_gene 51766 54574 . + . ID=Phyra77205;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000017;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 51766 54574 . + . ID=Phyra77205;Parent=Phyra77205;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 51766 51864 . + 0 ID=Phyra77205;Parent=Phyra77205;rank=1 scaffold_23 . exon 51766 51864 . + . ID=Phyra77205.1;Parent=Phyra77205;constitutive=1;rank=1 scaffold_23 . CDS 51951 52062 . + 0 ID=Phyra77205;Parent=Phyra77205;rank=2 scaffold_23 . exon 51951 52062 . + . ID=Phyra77205.2;Parent=Phyra77205;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_23 . CDS 52137 54574 . + 0 ID=Phyra77205;Parent=Phyra77205;rank=3 scaffold_23 . exon 52137 54574 . + . ID=Phyra77205.3;Parent=Phyra77205;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 ensembl protein_coding_gene 54870 55697 . - . ID=Phyra77206;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000018;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 54870 55697 . - . ID=Phyra77206;Parent=Phyra77206;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 54870 55697 . - 0 ID=Phyra77206;Parent=Phyra77206;rank=1 scaffold_23 . exon 54870 55697 . - . ID=Phyra77206.1;Parent=Phyra77206;constitutive=1;rank=1 scaffold_23 . exon 49322 49420 . - . ID=Phyra94734.1;Parent=Phyra94734;constitutive=1;rank=1 scaffold_23 . repeat_region 59497 59506 . ? . description=dust scaffold_23 . repeat_region 59651 59658 . ? . description=dust scaffold_23 . repeat_region 60047 60054 . ? . description=dust scaffold_23 . repeat_region 61291 61340 . ? . description=dust scaffold_23 . repeat_region 62718 62745 . ? . description=trf scaffold_23 . repeat_region 62892 62941 . ? . description=dust scaffold_23 ensembl protein_coding_gene 63503 65238 . + . ID=Phyra45108;biotype=protein_coding;external_name=gwEuk.23.141.1;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 63503 65238 . + . ID=Phyra45108;Parent=Phyra45108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 63503 63936 . + 0 ID=Phyra45108;Parent=Phyra45108;rank=1 scaffold_23 . exon 63503 63936 . + . ID=Phyra45108.1;Parent=Phyra45108;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 64006 64211 . + 0 ID=Phyra45108;Parent=Phyra45108;rank=2 scaffold_23 . exon 64006 64211 . + . ID=Phyra45108.2;Parent=Phyra45108;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 64365 64669 . + 0 ID=Phyra45108;Parent=Phyra45108;rank=3 scaffold_23 . exon 64365 64669 . + . ID=Phyra45108.3;Parent=Phyra45108;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 64737 64973 . + 0 ID=Phyra45108;Parent=Phyra45108;rank=4 scaffold_23 . exon 64737 64973 . + . ID=Phyra45108.4;Parent=Phyra45108;constitutive=1;rank=4 scaffold_23 . CDS 65053 65238 . + 0 ID=Phyra45108;Parent=Phyra45108;rank=5 scaffold_23 . exon 65053 65238 . + . ID=Phyra45108.5;Parent=Phyra45108;constitutive=1;rank=5 scaffold_23 ensembl protein_coding_gene 66204 69947 . + . ID=Phyra77209;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000021;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 66204 69947 . + . ID=Phyra77209;Parent=Phyra77209;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 66204 69947 . + 0 ID=Phyra77209;Parent=Phyra77209;rank=1 scaffold_23 . exon 66204 69947 . + . ID=Phyra77209.1;Parent=Phyra77209;constitutive=1;rank=1 scaffold_23 . biological_region 78594 78597 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 77043 78808 . - . ID=Phyra77211;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000023;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 77043 78808 . - . ID=Phyra77211;Parent=Phyra77211;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 77043 77155 . - 0 ID=Phyra77211;Parent=Phyra77211;rank=7 scaffold_23 . exon 77043 77155 . - . ID=Phyra77211.7;Parent=Phyra77211;constitutive=1;ensembl_phase=1;rank=7 scaffold_23 . CDS 77249 77357 . - 0 ID=Phyra77211;Parent=Phyra77211;rank=6 scaffold_23 . exon 77249 77357 . - . ID=Phyra77211.6;Parent=Phyra77211;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_23 . CDS 77555 77606 . - 0 ID=Phyra77211;Parent=Phyra77211;rank=5 scaffold_23 . exon 77555 77606 . - . ID=Phyra77211.5;Parent=Phyra77211;constitutive=1;ensembl_phase=2;rank=5 scaffold_23 . CDS 77673 77845 . - 0 ID=Phyra77211;Parent=Phyra77211;rank=4 scaffold_23 . exon 77673 77845 . - . ID=Phyra77211.4;Parent=Phyra77211;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_23 . CDS 77892 78040 . - 0 ID=Phyra77211;Parent=Phyra77211;rank=3 scaffold_23 . exon 77892 78040 . - . ID=Phyra77211.3;Parent=Phyra77211;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 78103 78193 . - 0 ID=Phyra77211;Parent=Phyra77211;rank=2 scaffold_23 . exon 78103 78193 . - . ID=Phyra77211.2;Parent=Phyra77211;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_23 . CDS 78272 78808 . - 0 ID=Phyra77211;Parent=Phyra77211;rank=1 scaffold_23 . exon 78272 78808 . - . ID=Phyra77211.1;Parent=Phyra77211;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 73080 76715 . + . ID=Phyra94735;biotype=protein_coding;external_name=C_scaffold_23000011;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 73080 76715 . + . ID=Phyra94735;Parent=Phyra94735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 73080 73179 . + 0 ID=Phyra94735;Parent=Phyra94735;rank=1 scaffold_23 . exon 73080 73179 . + . ID=Phyra94735.1;Parent=Phyra94735;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 73285 73419 . + 0 ID=Phyra94735;Parent=Phyra94735;rank=2 scaffold_23 . exon 73285 73419 . + . ID=Phyra94735.2;Parent=Phyra94735;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 73603 73917 . + 0 ID=Phyra94735;Parent=Phyra94735;rank=3 scaffold_23 . exon 73603 73917 . + . ID=Phyra94735.3;Parent=Phyra94735;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 73951 74287 . + 0 ID=Phyra94735;Parent=Phyra94735;rank=4 scaffold_23 . exon 73951 74287 . + . ID=Phyra94735.4;Parent=Phyra94735;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_23 . CDS 74672 74778 . + 0 ID=Phyra94735;Parent=Phyra94735;rank=5 scaffold_23 . exon 74672 74778 . + . ID=Phyra94735.5;Parent=Phyra94735;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_23 . CDS 74934 74939 . + 0 ID=Phyra94735;Parent=Phyra94735;rank=6 scaffold_23 . exon 74934 74939 . + . ID=Phyra94735.6;Parent=Phyra94735;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_23 . CDS 74977 75322 . + 0 ID=Phyra94735;Parent=Phyra94735;rank=7 scaffold_23 . exon 74977 75322 . + . ID=Phyra94735.7;Parent=Phyra94735;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_23 . CDS 75443 76093 . + 0 ID=Phyra94735;Parent=Phyra94735;rank=8 scaffold_23 . exon 75443 76093 . + . ID=Phyra94735.8;Parent=Phyra94735;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_23 . CDS 76310 76715 . + 0 ID=Phyra94735;Parent=Phyra94735;rank=9 scaffold_23 . exon 76310 76715 . + . ID=Phyra94735.9;Parent=Phyra94735;constitutive=1;ensembl_phase=2;rank=9 scaffold_23 . repeat_region 86880 86890 . ? . description=dust scaffold_23 ensembl protein_coding_gene 79952 80566 . - . ID=Phyra77212;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000024;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 79952 80566 . - . ID=Phyra77212;Parent=Phyra77212;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 79952 80566 . - 0 ID=Phyra77212;Parent=Phyra77212;rank=1 scaffold_23 . exon 79952 80566 . - . ID=Phyra77212.1;Parent=Phyra77212;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 80864 81955 . + . ID=Phyra77213;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000025;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 80864 81955 . + . ID=Phyra77213;Parent=Phyra77213;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 80864 80967 . + 0 ID=Phyra77213;Parent=Phyra77213;rank=1 scaffold_23 . exon 80864 80967 . + . ID=Phyra77213.1;Parent=Phyra77213;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 81041 81081 . + 0 ID=Phyra77213;Parent=Phyra77213;rank=2 scaffold_23 . exon 81041 81081 . + . ID=Phyra77213.2;Parent=Phyra77213;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 81144 81955 . + 0 ID=Phyra77213;Parent=Phyra77213;rank=3 scaffold_23 . exon 81144 81955 . + . ID=Phyra77213.3;Parent=Phyra77213;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 ensembl protein_coding_gene 82041 85566 . - . ID=Phyra77214;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000026;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 82041 85566 . - . ID=Phyra77214;Parent=Phyra77214;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 82041 84208 . - 0 ID=Phyra77214;Parent=Phyra77214;rank=4 scaffold_23 . exon 82041 84208 . - . ID=Phyra77214.4;Parent=Phyra77214;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 84340 84366 . - 0 ID=Phyra77214;Parent=Phyra77214;rank=3 scaffold_23 . exon 84340 84366 . - . ID=Phyra77214.3;Parent=Phyra77214;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 84679 84690 . - 0 ID=Phyra77214;Parent=Phyra77214;rank=2 scaffold_23 . exon 84679 84690 . - . ID=Phyra77214.2;Parent=Phyra77214;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 84753 85566 . - 0 ID=Phyra77214;Parent=Phyra77214;rank=1 scaffold_23 . exon 84753 85566 . - . ID=Phyra77214.1;Parent=Phyra77214;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . repeat_region 89197 89217 . ? . description=trf scaffold_23 . biological_region 96195 96198 0.999 - . logic_name=eponine scaffold_23 . biological_region 96246 96247 0.999 - . logic_name=eponine scaffold_23 ensembl protein_coding_gene 94775 96724 . + . ID=Phyra71492;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_23000002;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 94775 96724 . + . ID=Phyra71492;Parent=Phyra71492;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 94775 96724 . + 0 ID=Phyra71492;Parent=Phyra71492;rank=1 scaffold_23 . exon 94775 96724 . + . ID=Phyra71492.1;Parent=Phyra71492;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 91916 92785 . + . ID=Phyra77215;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000027;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 91916 92785 . + . ID=Phyra77215;Parent=Phyra77215;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 91916 92566 . + 0 ID=Phyra77215;Parent=Phyra77215;rank=1 scaffold_23 . exon 91916 92566 . + . ID=Phyra77215.1;Parent=Phyra77215;constitutive=1;rank=1 scaffold_23 . CDS 92672 92785 . + 0 ID=Phyra77215;Parent=Phyra77215;rank=2 scaffold_23 . exon 92672 92785 . + . ID=Phyra77215.2;Parent=Phyra77215;constitutive=1;rank=2 scaffold_23 ensembl protein_coding_gene 96979 104151 . - . ID=Phyra77217;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000029;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 96979 104151 . - . ID=Phyra77217;Parent=Phyra77217;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 96979 104151 . - 0 ID=Phyra77217;Parent=Phyra77217;rank=1 scaffold_23 . exon 96979 104151 . - . ID=Phyra77217.1;Parent=Phyra77217;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 104397 107098 . + . ID=Phyra77218;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000030;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 104397 107098 . + . ID=Phyra77218;Parent=Phyra77218;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 104397 106997 . + 0 ID=Phyra77218;Parent=Phyra77218;rank=1 scaffold_23 . exon 104397 106997 . + . ID=Phyra77218.1;Parent=Phyra77218;constitutive=1;rank=1 scaffold_23 . CDS 107084 107098 . + 0 ID=Phyra77218;Parent=Phyra77218;rank=2 scaffold_23 . exon 107084 107098 . + . ID=Phyra77218.2;Parent=Phyra77218;constitutive=1;rank=2 scaffold_23 ensembl protein_coding_gene 108075 110783 . + . ID=Phyra77219;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000031;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 108075 110783 . + . ID=Phyra77219;Parent=Phyra77219;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 108075 109828 . + 0 ID=Phyra77219;Parent=Phyra77219;rank=1 scaffold_23 . exon 108075 109828 . + . ID=Phyra77219.1;Parent=Phyra77219;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 109901 110306 . + 0 ID=Phyra77219;Parent=Phyra77219;rank=2 scaffold_23 . CDS 110386 110499 . + 0 ID=Phyra77219;Parent=Phyra77219;rank=3 scaffold_23 . CDS 110571 110783 . + 0 ID=Phyra77219;Parent=Phyra77219;rank=4 scaffold_23 . repeat_region 111022 111030 . ? . description=dust scaffold_23 . repeat_region 112324 112332 . ? . description=dust scaffold_23 . repeat_region 113234 113241 . ? . description=dust scaffold_23 . biological_region 113384 113385 0.999 - . logic_name=eponine scaffold_23 . biological_region 117120 117123 0.999 - . logic_name=eponine scaffold_23 . exon 109901 110306 . + . ID=Phyra77219.2;Parent=Phyra77219;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . exon 110386 110499 . + . ID=Phyra77219.3;Parent=Phyra77219;constitutive=1;rank=3 scaffold_23 . exon 110571 110783 . + . ID=Phyra77219.4;Parent=Phyra77219;constitutive=1;rank=4 scaffold_23 ensembl protein_coding_gene 111142 113079 . - . ID=Phyra77220;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000032;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 111142 113079 . - . ID=Phyra77220;Parent=Phyra77220;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 111142 111957 . - 0 ID=Phyra77220;Parent=Phyra77220;rank=5 scaffold_23 . exon 111142 111957 . - . ID=Phyra77220.5;Parent=Phyra77220;constitutive=1;rank=5 scaffold_23 . CDS 112043 112197 . - 0 ID=Phyra77220;Parent=Phyra77220;rank=4 scaffold_23 . exon 112043 112197 . - . ID=Phyra77220.4;Parent=Phyra77220;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 112263 112305 . - 0 ID=Phyra77220;Parent=Phyra77220;rank=3 scaffold_23 . exon 112263 112305 . - . ID=Phyra77220.3;Parent=Phyra77220;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_23 . CDS 112387 112536 . - 0 ID=Phyra77220;Parent=Phyra77220;rank=2 scaffold_23 . exon 112387 112536 . - . ID=Phyra77220.2;Parent=Phyra77220;constitutive=1;rank=2 scaffold_23 . CDS 112621 113079 . - 0 ID=Phyra77220;Parent=Phyra77220;rank=1 scaffold_23 . exon 112621 113079 . - . ID=Phyra77220.1;Parent=Phyra77220;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 113765 116022 . + . ID=Phyra77221;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000033;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 113765 116022 . + . ID=Phyra77221;Parent=Phyra77221;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 113765 114025 . + 0 ID=Phyra77221;Parent=Phyra77221;rank=1 scaffold_23 . exon 113765 114025 . + . ID=Phyra77221.1;Parent=Phyra77221;constitutive=1;rank=1 scaffold_23 . CDS 114091 114970 . + 0 ID=Phyra77221;Parent=Phyra77221;rank=2 scaffold_23 . exon 114091 114970 . + . ID=Phyra77221.2;Parent=Phyra77221;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_23 . CDS 115058 115154 . + 0 ID=Phyra77221;Parent=Phyra77221;rank=3 scaffold_23 . exon 115058 115154 . + . ID=Phyra77221.3;Parent=Phyra77221;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_23 . CDS 115233 115426 . + 0 ID=Phyra77221;Parent=Phyra77221;rank=4 scaffold_23 . exon 115233 115426 . + . ID=Phyra77221.4;Parent=Phyra77221;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_23 . CDS 115493 116022 . + 0 ID=Phyra77221;Parent=Phyra77221;rank=5 scaffold_23 . exon 115493 116022 . + . ID=Phyra77221.5;Parent=Phyra77221;constitutive=1;ensembl_phase=1;rank=5 scaffold_23 ensembl protein_coding_gene 116146 117864 . - . ID=Phyra77222;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000034;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 116146 117864 . - . ID=Phyra77222;Parent=Phyra77222;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 116146 116189 . - 0 ID=Phyra77222;Parent=Phyra77222;rank=2 scaffold_23 . exon 116146 116189 . - . ID=Phyra77222.2;Parent=Phyra77222;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 116274 117864 . - 0 ID=Phyra77222;Parent=Phyra77222;rank=1 scaffold_23 . exon 116274 117864 . - . ID=Phyra77222.1;Parent=Phyra77222;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 118134 123713 . + . ID=Phyra94741;biotype=protein_coding;external_name=C_scaffold_23000017;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 118134 123713 . + . ID=Phyra94741;Parent=Phyra94741;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 118134 118166 . + 0 ID=Phyra94741;Parent=Phyra94741;rank=1 scaffold_23 . exon 118134 118166 . + . ID=Phyra94741.1;Parent=Phyra94741;constitutive=1;rank=1 scaffold_23 . CDS 118361 118728 . + 0 ID=Phyra94741;Parent=Phyra94741;rank=2 scaffold_23 . CDS 118942 119257 . + 0 ID=Phyra94741;Parent=Phyra94741;rank=3 scaffold_23 . CDS 119399 119651 . + 0 ID=Phyra94741;Parent=Phyra94741;rank=4 scaffold_23 . CDS 119904 119976 . + 0 ID=Phyra94741;Parent=Phyra94741;rank=5 scaffold_23 . CDS 120282 120566 . + 0 ID=Phyra94741;Parent=Phyra94741;rank=6 scaffold_23 . CDS 120662 120803 . + 0 ID=Phyra94741;Parent=Phyra94741;rank=7 scaffold_23 . CDS 120892 120953 . + 0 ID=Phyra94741;Parent=Phyra94741;rank=8 scaffold_23 . CDS 121019 121083 . + 0 ID=Phyra94741;Parent=Phyra94741;rank=9 scaffold_23 . CDS 121169 121255 . + 0 ID=Phyra94741;Parent=Phyra94741;rank=10 scaffold_23 . CDS 121328 121384 . + 0 ID=Phyra94741;Parent=Phyra94741;rank=11 scaffold_23 . CDS 121461 121546 . + 0 ID=Phyra94741;Parent=Phyra94741;rank=12 scaffold_23 . CDS 121659 121703 . + 0 ID=Phyra94741;Parent=Phyra94741;rank=13 scaffold_23 . CDS 121766 121843 . + 0 ID=Phyra94741;Parent=Phyra94741;rank=14 scaffold_23 . CDS 121920 122222 . + 0 ID=Phyra94741;Parent=Phyra94741;rank=15 scaffold_23 . CDS 122310 123713 . + 0 ID=Phyra94741;Parent=Phyra94741;rank=16 scaffold_23 ensembl protein_coding_gene 124360 125676 . - . ID=Phyra77225;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000037;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 124360 125676 . - . ID=Phyra77225;Parent=Phyra77225;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 124360 125676 . - 0 ID=Phyra77225;Parent=Phyra77225;rank=1 scaffold_23 . exon 124360 125676 . - . ID=Phyra77225.1;Parent=Phyra77225;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 125840 127569 . + . ID=Phyra77226;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000038;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 125840 127569 . + . ID=Phyra77226;Parent=Phyra77226;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 125840 125893 . + 0 ID=Phyra77226;Parent=Phyra77226;rank=1 scaffold_23 . exon 125840 125893 . + . ID=Phyra77226.1;Parent=Phyra77226;constitutive=1;rank=1 scaffold_23 . CDS 125922 126234 . + 0 ID=Phyra77226;Parent=Phyra77226;rank=2 scaffold_23 . exon 125922 126234 . + . ID=Phyra77226.2;Parent=Phyra77226;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_23 . CDS 126285 126461 . + 0 ID=Phyra77226;Parent=Phyra77226;rank=3 scaffold_23 . exon 126285 126461 . + . ID=Phyra77226.3;Parent=Phyra77226;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 126529 126809 . + 0 ID=Phyra77226;Parent=Phyra77226;rank=4 scaffold_23 . exon 126529 126809 . + . ID=Phyra77226.4;Parent=Phyra77226;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 126880 127440 . + 0 ID=Phyra77226;Parent=Phyra77226;rank=5 scaffold_23 . exon 126880 127440 . + . ID=Phyra77226.5;Parent=Phyra77226;constitutive=1;rank=5 scaffold_23 . CDS 127510 127569 . + 0 ID=Phyra77226;Parent=Phyra77226;rank=6 scaffold_23 . exon 127510 127569 . + . ID=Phyra77226.6;Parent=Phyra77226;constitutive=1;rank=6 scaffold_23 ensembl protein_coding_gene 127725 129245 . - . ID=Phyra77227;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000039;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 127725 129245 . - . ID=Phyra77227;Parent=Phyra77227;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 127725 128382 . - 0 ID=Phyra77227;Parent=Phyra77227;rank=4 scaffold_23 . exon 127725 128382 . - . ID=Phyra77227.4;Parent=Phyra77227;constitutive=1;ensembl_phase=2;rank=4 scaffold_23 . CDS 128451 128982 . - 0 ID=Phyra77227;Parent=Phyra77227;rank=3 scaffold_23 . CDS 129040 129090 . - 0 ID=Phyra77227;Parent=Phyra77227;rank=2 scaffold_23 . CDS 129200 129245 . - 0 ID=Phyra77227;Parent=Phyra77227;rank=1 scaffold_23 . exon 118361 118728 . + . ID=Phyra94741.2;Parent=Phyra94741;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_23 . exon 118942 119257 . + . ID=Phyra94741.3;Parent=Phyra94741;constitutive=1;ensembl_phase=2;rank=3 scaffold_23 . exon 119399 119651 . + . ID=Phyra94741.4;Parent=Phyra94741;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_23 . exon 119904 119976 . + . ID=Phyra94741.5;Parent=Phyra94741;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_23 . exon 120282 120566 . + . ID=Phyra94741.6;Parent=Phyra94741;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_23 . exon 120662 120803 . + . ID=Phyra94741.7;Parent=Phyra94741;constitutive=1;ensembl_phase=2;rank=7 scaffold_23 . exon 120892 120953 . + . ID=Phyra94741.8;Parent=Phyra94741;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_23 . exon 121019 121083 . + . ID=Phyra94741.9;Parent=Phyra94741;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_23 . exon 121169 121255 . + . ID=Phyra94741.10;Parent=Phyra94741;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_23 . exon 121328 121384 . + . ID=Phyra94741.11;Parent=Phyra94741;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_23 . exon 121461 121546 . + . ID=Phyra94741.12;Parent=Phyra94741;constitutive=1;ensembl_phase=1;rank=12 scaffold_23 . exon 121659 121703 . + . ID=Phyra94741.13;Parent=Phyra94741;constitutive=1;rank=13 scaffold_23 . exon 121766 121843 . + . ID=Phyra94741.14;Parent=Phyra94741;constitutive=1;rank=14 scaffold_23 . exon 121920 122222 . + . ID=Phyra94741.15;Parent=Phyra94741;constitutive=1;rank=15 scaffold_23 . exon 122310 123713 . + . ID=Phyra94741.16;Parent=Phyra94741;constitutive=1;rank=16 scaffold_23 ensembl protein_coding_gene 123871 124218 . - . ID=Phyra94742;biotype=protein_coding;external_name=C_scaffold_23000018;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 123871 124218 . - . ID=Phyra94742;Parent=Phyra94742;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 123871 124218 . - 0 ID=Phyra94742;Parent=Phyra94742;rank=1 scaffold_23 . exon 123871 124218 . - . ID=Phyra94742.1;Parent=Phyra94742;constitutive=1;rank=1 scaffold_23 . biological_region 128713 128716 0.999 + . logic_name=eponine scaffold_23 . biological_region 128734 128739 0.999 - . logic_name=eponine scaffold_23 . biological_region 129904 129904 0.999 + . logic_name=eponine scaffold_23 . biological_region 130151 130154 0.999 + . logic_name=eponine scaffold_23 . biological_region 130211 130215 0.999 + . logic_name=eponine scaffold_23 . repeat_region 130422 130429 . ? . description=dust scaffold_23 . repeat_region 132159 132196 . ? . description=trf scaffold_23 . biological_region 134736 134740 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 129721 130329 . + . ID=Phyra45136;biotype=protein_coding;external_name=gwEuk.23.169.1;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 129721 130329 . + . ID=Phyra45136;Parent=Phyra45136;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 129721 130329 . + 0 ID=Phyra45136;Parent=Phyra45136;rank=1 scaffold_23 . exon 129721 130329 . + . ID=Phyra45136.1;Parent=Phyra45136;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 137754 139151 . + . ID=Phyra71493;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_23000003;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 137754 139151 . + . ID=Phyra71493;Parent=Phyra71493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 137754 139151 . + 0 ID=Phyra71493;Parent=Phyra71493;rank=1 scaffold_23 . exon 137754 139151 . + . ID=Phyra71493.1;Parent=Phyra71493;constitutive=1;rank=1 scaffold_23 . exon 128451 128982 . - . ID=Phyra77227.3;Parent=Phyra77227;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_23 . exon 129040 129090 . - . ID=Phyra77227.2;Parent=Phyra77227;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_23 . exon 129200 129245 . - . ID=Phyra77227.1;Parent=Phyra77227;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 131428 134876 . - . ID=Phyra77229;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000041;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 131428 134876 . - . ID=Phyra77229;Parent=Phyra77229;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 131428 131506 . - 0 ID=Phyra77229;Parent=Phyra77229;rank=3 scaffold_23 . exon 131428 131506 . - . ID=Phyra77229.3;Parent=Phyra77229;constitutive=1;ensembl_phase=2;rank=3 scaffold_23 . CDS 131565 131885 . - 0 ID=Phyra77229;Parent=Phyra77229;rank=2 scaffold_23 . exon 131565 131885 . - . ID=Phyra77229.2;Parent=Phyra77229;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_23 . CDS 132199 134876 . - 0 ID=Phyra77229;Parent=Phyra77229;rank=1 scaffold_23 . exon 132199 134876 . - . ID=Phyra77229.1;Parent=Phyra77229;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 ensembl protein_coding_gene 141127 143243 . - . ID=Phyra71494;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_23000004;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 141127 143243 . - . ID=Phyra71494;Parent=Phyra71494;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 141127 142470 . - 0 ID=Phyra71494;Parent=Phyra71494;rank=2 scaffold_23 . exon 141127 142470 . - . ID=Phyra71494.2;Parent=Phyra71494;constitutive=1;rank=2 scaffold_23 . CDS 143226 143243 . - 0 ID=Phyra71494;Parent=Phyra71494;rank=1 scaffold_23 . exon 143226 143243 . - . ID=Phyra71494.1;Parent=Phyra71494;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 145992 146632 . + . ID=Phyra71495;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_23000005;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 145992 146632 . + . ID=Phyra71495;Parent=Phyra71495;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 145992 146079 . + 0 ID=Phyra71495;Parent=Phyra71495;rank=1 scaffold_23 . exon 145992 146079 . + . ID=Phyra71495.1;Parent=Phyra71495;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 146205 146632 . + 0 ID=Phyra71495;Parent=Phyra71495;rank=2 scaffold_23 . exon 146205 146632 . + . ID=Phyra71495.2;Parent=Phyra71495;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 ensembl protein_coding_gene 139754 140980 . + . ID=Phyra77231;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000043;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 139754 140980 . + . ID=Phyra77231;Parent=Phyra77231;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 139754 140980 . + 0 ID=Phyra77231;Parent=Phyra77231;rank=1 scaffold_23 . exon 139754 140980 . + . ID=Phyra77231.1;Parent=Phyra77231;constitutive=1;rank=1 scaffold_23 . repeat_region 148424 148456 . ? . description=dust scaffold_23 . repeat_region 148425 148456 . ? . description=trf scaffold_23 . biological_region 148821 148822 0.999 - . logic_name=eponine scaffold_23 . biological_region 148846 148848 0.999 - . logic_name=eponine scaffold_23 . biological_region 152668 152671 0.999 - . logic_name=eponine scaffold_23 . biological_region 152671 152674 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 147994 148637 . - . ID=Phyra71496;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_23000006;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 147994 148637 . - . ID=Phyra71496;Parent=Phyra71496;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 147994 148421 . - 0 ID=Phyra71496;Parent=Phyra71496;rank=2 scaffold_23 . exon 147994 148421 . - . ID=Phyra71496.2;Parent=Phyra71496;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 148550 148637 . - 0 ID=Phyra71496;Parent=Phyra71496;rank=1 scaffold_23 . exon 148550 148637 . - . ID=Phyra71496.1;Parent=Phyra71496;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 157313 158604 . + . ID=Phyra71497;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_23000007;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 157313 158604 . + . ID=Phyra71497;Parent=Phyra71497;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 157313 157396 . + 0 ID=Phyra71497;Parent=Phyra71497;rank=1 scaffold_23 . exon 157313 157396 . + . ID=Phyra71497.1;Parent=Phyra71497;constitutive=1;rank=1 scaffold_23 . CDS 157474 157888 . + 0 ID=Phyra71497;Parent=Phyra71497;rank=2 scaffold_23 . exon 157474 157888 . + . ID=Phyra71497.2;Parent=Phyra71497;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_23 . CDS 157953 158057 . + 0 ID=Phyra71497;Parent=Phyra71497;rank=3 scaffold_23 . CDS 158125 158208 . + 0 ID=Phyra71497;Parent=Phyra71497;rank=4 scaffold_23 . CDS 158279 158411 . + 0 ID=Phyra71497;Parent=Phyra71497;rank=5 scaffold_23 . CDS 158502 158604 . + 0 ID=Phyra71497;Parent=Phyra71497;rank=6 scaffold_23 ensembl protein_coding_gene 149215 149681 . + . ID=Phyra77235;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000047;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 149215 149681 . + . ID=Phyra77235;Parent=Phyra77235;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 149215 149480 . + 0 ID=Phyra77235;Parent=Phyra77235;rank=1 scaffold_23 . exon 149215 149480 . + . ID=Phyra77235.1;Parent=Phyra77235;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 149549 149681 . + 0 ID=Phyra77235;Parent=Phyra77235;rank=2 scaffold_23 . exon 149549 149681 . + . ID=Phyra77235.2;Parent=Phyra77235;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 ensembl protein_coding_gene 152598 153509 . + . ID=Phyra77237;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000049;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 152598 153509 . + . ID=Phyra77237;Parent=Phyra77237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 152598 152650 . + 0 ID=Phyra77237;Parent=Phyra77237;rank=1 scaffold_23 . exon 152598 152650 . + . ID=Phyra77237.1;Parent=Phyra77237;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 152725 152833 . + 0 ID=Phyra77237;Parent=Phyra77237;rank=2 scaffold_23 . exon 152725 152833 . + . ID=Phyra77237.2;Parent=Phyra77237;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 152901 153003 . + 0 ID=Phyra77237;Parent=Phyra77237;rank=3 scaffold_23 . exon 152901 153003 . + . ID=Phyra77237.3;Parent=Phyra77237;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_23 . CDS 153077 153222 . + 0 ID=Phyra77237;Parent=Phyra77237;rank=4 scaffold_23 . exon 153077 153222 . + . ID=Phyra77237.4;Parent=Phyra77237;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 153293 153483 . + 0 ID=Phyra77237;Parent=Phyra77237;rank=5 scaffold_23 . exon 153293 153483 . + . ID=Phyra77237.5;Parent=Phyra77237;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_23 . CDS 153506 153509 . + 0 ID=Phyra77237;Parent=Phyra77237;rank=6 scaffold_23 . exon 153506 153509 . + . ID=Phyra77237.6;Parent=Phyra77237;constitutive=1;ensembl_phase=2;rank=6 scaffold_23 ensembl protein_coding_gene 155843 157096 . - . ID=Phyra77238;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000050;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 155843 157096 . - . ID=Phyra77238;Parent=Phyra77238;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 155843 157096 . - 0 ID=Phyra77238;Parent=Phyra77238;rank=1 scaffold_23 . exon 155843 157096 . - . ID=Phyra77238.1;Parent=Phyra77238;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 149762 152103 . - . ID=Phyra94744;biotype=protein_coding;external_name=C_scaffold_23000020;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 149762 152103 . - . ID=Phyra94744;Parent=Phyra94744;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 149762 150038 . - 0 ID=Phyra94744;Parent=Phyra94744;rank=10 scaffold_23 . exon 149762 150038 . - . ID=Phyra94744.10;Parent=Phyra94744;constitutive=1;ensembl_phase=2;rank=10 scaffold_23 . CDS 150107 150214 . - 0 ID=Phyra94744;Parent=Phyra94744;rank=9 scaffold_23 . exon 150107 150214 . - . ID=Phyra94744.9;Parent=Phyra94744;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_23 . CDS 150282 150541 . - 0 ID=Phyra94744;Parent=Phyra94744;rank=8 scaffold_23 . exon 150282 150541 . - . ID=Phyra94744.8;Parent=Phyra94744;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_23 . CDS 150616 150684 . - 0 ID=Phyra94744;Parent=Phyra94744;rank=7 scaffold_23 . exon 150616 150684 . - . ID=Phyra94744.7;Parent=Phyra94744;constitutive=1;rank=7 scaffold_23 . CDS 150751 151033 . - 0 ID=Phyra94744;Parent=Phyra94744;rank=6 scaffold_23 . exon 150751 151033 . - . ID=Phyra94744.6;Parent=Phyra94744;constitutive=1;ensembl_phase=2;rank=6 scaffold_23 . CDS 151417 151492 . - 0 ID=Phyra94744;Parent=Phyra94744;rank=5 scaffold_23 . exon 151417 151492 . - . ID=Phyra94744.5;Parent=Phyra94744;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_23 . CDS 151554 151623 . - 0 ID=Phyra94744;Parent=Phyra94744;rank=4 scaffold_23 . exon 151554 151623 . - . ID=Phyra94744.4;Parent=Phyra94744;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_23 . CDS 151701 151820 . - 0 ID=Phyra94744;Parent=Phyra94744;rank=3 scaffold_23 . exon 151701 151820 . - . ID=Phyra94744.3;Parent=Phyra94744;constitutive=1;rank=3 scaffold_23 . CDS 151915 151953 . - 0 ID=Phyra94744;Parent=Phyra94744;rank=2 scaffold_23 . exon 151915 151953 . - . ID=Phyra94744.2;Parent=Phyra94744;constitutive=1;rank=2 scaffold_23 . CDS 152071 152103 . - 0 ID=Phyra94744;Parent=Phyra94744;rank=1 scaffold_23 . exon 152071 152103 . - . ID=Phyra94744.1;Parent=Phyra94744;constitutive=1;rank=1 scaffold_23 . exon 157953 158057 . + . ID=Phyra71497.3;Parent=Phyra71497;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_23 . exon 158125 158208 . + . ID=Phyra71497.4;Parent=Phyra71497;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_23 . exon 158279 158411 . + . ID=Phyra71497.5;Parent=Phyra71497;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_23 . exon 158502 158604 . + . ID=Phyra71497.6;Parent=Phyra71497;constitutive=1;ensembl_phase=2;rank=6 scaffold_23 ensembl protein_coding_gene 166063 166743 . + . ID=Phyra71498;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_23000008;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 166063 166743 . + . ID=Phyra71498;Parent=Phyra71498;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 166063 166743 . + 0 ID=Phyra71498;Parent=Phyra71498;rank=1 scaffold_23 . exon 166063 166743 . + . ID=Phyra71498.1;Parent=Phyra71498;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 167299 168717 . + . ID=Phyra77241;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000053;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 167299 168717 . + . ID=Phyra77241;Parent=Phyra77241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 167299 167310 . + 0 ID=Phyra77241;Parent=Phyra77241;rank=1 scaffold_23 . exon 167299 167310 . + . ID=Phyra77241.1;Parent=Phyra77241;constitutive=1;rank=1 scaffold_23 . CDS 167371 167553 . + 0 ID=Phyra77241;Parent=Phyra77241;rank=2 scaffold_23 . CDS 167611 167686 . + 0 ID=Phyra77241;Parent=Phyra77241;rank=3 scaffold_23 . CDS 167755 167866 . + 0 ID=Phyra77241;Parent=Phyra77241;rank=4 scaffold_23 . CDS 167932 168112 . + 0 ID=Phyra77241;Parent=Phyra77241;rank=5 scaffold_23 . CDS 168192 168368 . + 0 ID=Phyra77241;Parent=Phyra77241;rank=6 scaffold_23 . CDS 168438 168551 . + 0 ID=Phyra77241;Parent=Phyra77241;rank=7 scaffold_23 . CDS 168625 168717 . + 0 ID=Phyra77241;Parent=Phyra77241;rank=8 scaffold_23 . biological_region 169941 169942 0.999 - . logic_name=eponine scaffold_23 . biological_region 170173 170173 0.999 - . logic_name=eponine scaffold_23 . repeat_region 173053 173076 . ? . description=trf scaffold_23 . repeat_region 175769 175788 . ? . description=trf scaffold_23 . repeat_region 175781 175812 . ? . description=trf scaffold_23 . biological_region 176285 176289 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 174680 175780 . + . ID=Phyra45186;biotype=protein_coding;external_name=gwEuk.23.219.1;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 174680 175780 . + . ID=Phyra45186;Parent=Phyra45186;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 174680 175780 . + 0 ID=Phyra45186;Parent=Phyra45186;rank=1 scaffold_23 . exon 174680 175780 . + . ID=Phyra45186.1;Parent=Phyra45186;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 176480 177958 . + . ID=Phyra45190;biotype=protein_coding;external_name=gwEuk.23.223.1;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 176480 177958 . + . ID=Phyra45190;Parent=Phyra45190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 176480 177958 . + 0 ID=Phyra45190;Parent=Phyra45190;rank=1 scaffold_23 . exon 176480 177958 . + . ID=Phyra45190.1;Parent=Phyra45190;constitutive=1;rank=1 scaffold_23 . exon 167371 167553 . + . ID=Phyra77241.2;Parent=Phyra77241;constitutive=1;rank=2 scaffold_23 . exon 167611 167686 . + . ID=Phyra77241.3;Parent=Phyra77241;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_23 . exon 167755 167866 . + . ID=Phyra77241.4;Parent=Phyra77241;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_23 . exon 167932 168112 . + . ID=Phyra77241.5;Parent=Phyra77241;constitutive=1;ensembl_phase=2;rank=5 scaffold_23 . exon 168192 168368 . + . ID=Phyra77241.6;Parent=Phyra77241;constitutive=1;rank=6 scaffold_23 . exon 168438 168551 . + . ID=Phyra77241.7;Parent=Phyra77241;constitutive=1;rank=7 scaffold_23 . exon 168625 168717 . + . ID=Phyra77241.8;Parent=Phyra77241;constitutive=1;rank=8 scaffold_23 ensembl protein_coding_gene 170406 172555 . - . ID=Phyra77243;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000055;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 170406 172555 . - . ID=Phyra77243;Parent=Phyra77243;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 170406 171133 . - 0 ID=Phyra77243;Parent=Phyra77243;rank=3 scaffold_23 . exon 170406 171133 . - . ID=Phyra77243.3;Parent=Phyra77243;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 172076 172420 . - 0 ID=Phyra77243;Parent=Phyra77243;rank=2 scaffold_23 . exon 172076 172420 . - . ID=Phyra77243.2;Parent=Phyra77243;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 172504 172555 . - 0 ID=Phyra77243;Parent=Phyra77243;rank=1 scaffold_23 . exon 172504 172555 . - . ID=Phyra77243.1;Parent=Phyra77243;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 169120 170199 . + . ID=Phyra94747;biotype=protein_coding;external_name=C_scaffold_23000023;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 169120 170199 . + . ID=Phyra94747;Parent=Phyra94747;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 169120 169562 . + 0 ID=Phyra94747;Parent=Phyra94747;rank=1 scaffold_23 . exon 169120 169562 . + . ID=Phyra94747.1;Parent=Phyra94747;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 169635 170199 . + 0 ID=Phyra94747;Parent=Phyra94747;rank=2 scaffold_23 . exon 169635 170199 . + . ID=Phyra94747.2;Parent=Phyra94747;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 ensembl protein_coding_gene 172671 174087 . - . ID=Phyra94751;biotype=protein_coding;external_name=C_scaffold_23000027;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 172671 174087 . - . ID=Phyra94751;Parent=Phyra94751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 172671 173149 . - 0 ID=Phyra94751;Parent=Phyra94751;rank=3 scaffold_23 . exon 172671 173149 . - . ID=Phyra94751.3;Parent=Phyra94751;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 173243 173692 . - 0 ID=Phyra94751;Parent=Phyra94751;rank=2 scaffold_23 . exon 173243 173692 . - . ID=Phyra94751.2;Parent=Phyra94751;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 173766 174087 . - 0 ID=Phyra94751;Parent=Phyra94751;rank=1 scaffold_23 . exon 173766 174087 . - . ID=Phyra94751.1;Parent=Phyra94751;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 181585 182947 . - . ID=Phyra77247;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000059;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 181585 182947 . - . ID=Phyra77247;Parent=Phyra77247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 181585 181779 . - 0 ID=Phyra77247;Parent=Phyra77247;rank=4 scaffold_23 . exon 181585 181779 . - . ID=Phyra77247.4;Parent=Phyra77247;constitutive=1;rank=4 scaffold_23 . CDS 181853 182286 . - 0 ID=Phyra77247;Parent=Phyra77247;rank=3 scaffold_23 . exon 181853 182286 . - . ID=Phyra77247.3;Parent=Phyra77247;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 182368 182454 . - 0 ID=Phyra77247;Parent=Phyra77247;rank=2 scaffold_23 . exon 182368 182454 . - . ID=Phyra77247.2;Parent=Phyra77247;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 182827 182947 . - 0 ID=Phyra77247;Parent=Phyra77247;rank=1 scaffold_23 . exon 182827 182947 . - . ID=Phyra77247.1;Parent=Phyra77247;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 183942 185924 . + . ID=Phyra77248;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000060;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 183942 185924 . + . ID=Phyra77248;Parent=Phyra77248;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 183942 185924 . + 0 ID=Phyra77248;Parent=Phyra77248;rank=1 scaffold_23 . exon 183942 185924 . + . ID=Phyra77248.1;Parent=Phyra77248;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 186442 187317 . + . ID=Phyra77249;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000061;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 186442 187317 . + . ID=Phyra77249;Parent=Phyra77249;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 186442 187317 . + 0 ID=Phyra77249;Parent=Phyra77249;rank=1 scaffold_23 . exon 186442 187317 . + . ID=Phyra77249.1;Parent=Phyra77249;constitutive=1;rank=1 scaffold_23 . biological_region 190281 190284 0.999 - . logic_name=eponine scaffold_23 . biological_region 192138 192144 0.999 - . logic_name=eponine scaffold_23 . biological_region 192688 192690 0.999 + . logic_name=eponine scaffold_23 . biological_region 192719 192722 0.999 - . logic_name=eponine scaffold_23 ensembl protein_coding_gene 187722 189611 . + . ID=Phyra77250;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000062;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 187722 189611 . + . ID=Phyra77250;Parent=Phyra77250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 187722 189009 . + 0 ID=Phyra77250;Parent=Phyra77250;rank=1 scaffold_23 . exon 187722 189009 . + . ID=Phyra77250.1;Parent=Phyra77250;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 189091 189215 . + 0 ID=Phyra77250;Parent=Phyra77250;rank=2 scaffold_23 . exon 189091 189215 . + . ID=Phyra77250.2;Parent=Phyra77250;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 189294 189405 . + 0 ID=Phyra77250;Parent=Phyra77250;rank=3 scaffold_23 . exon 189294 189405 . + . ID=Phyra77250.3;Parent=Phyra77250;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_23 . CDS 189469 189611 . + 0 ID=Phyra77250;Parent=Phyra77250;rank=4 scaffold_23 . exon 189469 189611 . + . ID=Phyra77250.4;Parent=Phyra77250;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 ensembl protein_coding_gene 190002 193575 . + . ID=Phyra77251;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000063;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 190002 193575 . + . ID=Phyra77251;Parent=Phyra77251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 190002 192394 . + 0 ID=Phyra77251;Parent=Phyra77251;rank=1 scaffold_23 . exon 190002 192394 . + . ID=Phyra77251.1;Parent=Phyra77251;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 192514 192529 . + 0 ID=Phyra77251;Parent=Phyra77251;rank=2 scaffold_23 . exon 192514 192529 . + . ID=Phyra77251.2;Parent=Phyra77251;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 192585 192971 . + 0 ID=Phyra77251;Parent=Phyra77251;rank=3 scaffold_23 . exon 192585 192971 . + . ID=Phyra77251.3;Parent=Phyra77251;constitutive=1;rank=3 scaffold_23 . CDS 193047 193217 . + 0 ID=Phyra77251;Parent=Phyra77251;rank=4 scaffold_23 . exon 193047 193217 . + . ID=Phyra77251.4;Parent=Phyra77251;constitutive=1;rank=4 scaffold_23 . CDS 193261 193410 . + 0 ID=Phyra77251;Parent=Phyra77251;rank=5 scaffold_23 . exon 193261 193410 . + . ID=Phyra77251.5;Parent=Phyra77251;constitutive=1;rank=5 scaffold_23 . CDS 193483 193533 . + 0 ID=Phyra77251;Parent=Phyra77251;rank=6 scaffold_23 . exon 193483 193533 . + . ID=Phyra77251.6;Parent=Phyra77251;constitutive=1;rank=6 scaffold_23 . CDS 193567 193575 . + 0 ID=Phyra77251;Parent=Phyra77251;rank=7 scaffold_23 . exon 193567 193575 . + . ID=Phyra77251.7;Parent=Phyra77251;constitutive=1;rank=7 scaffold_23 . repeat_region 201131 201168 . ? . description=trf scaffold_23 . repeat_region 206327 206364 . ? . description=dust scaffold_23 ensembl protein_coding_gene 199444 200482 . + . ID=Phyra71500;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_23000010;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 199444 200482 . + . ID=Phyra71500;Parent=Phyra71500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 199444 199572 . + 0 ID=Phyra71500;Parent=Phyra71500;rank=1 scaffold_23 . exon 199444 199572 . + . ID=Phyra71500.1;Parent=Phyra71500;constitutive=1;rank=1 scaffold_23 . CDS 199655 200482 . + 0 ID=Phyra71500;Parent=Phyra71500;rank=2 scaffold_23 . exon 199655 200482 . + . ID=Phyra71500.2;Parent=Phyra71500;constitutive=1;rank=2 scaffold_23 ensembl protein_coding_gene 197956 199080 . + . ID=Phyra77252;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000064;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 197956 199080 . + . ID=Phyra77252;Parent=Phyra77252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 197956 199080 . + 0 ID=Phyra77252;Parent=Phyra77252;rank=1 scaffold_23 . exon 197956 199080 . + . ID=Phyra77252.1;Parent=Phyra77252;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 201200 202123 . + . ID=Phyra77254;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000066;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 201200 202123 . + . ID=Phyra77254;Parent=Phyra77254;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 201200 202123 . + 0 ID=Phyra77254;Parent=Phyra77254;rank=1 scaffold_23 . exon 201200 202123 . + . ID=Phyra77254.1;Parent=Phyra77254;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 202329 207653 . - . ID=Phyra77255;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000067;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 202329 207653 . - . ID=Phyra77255;Parent=Phyra77255;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 202329 203551 . - 0 ID=Phyra77255;Parent=Phyra77255;rank=10 scaffold_23 . exon 202329 203551 . - . ID=Phyra77255.10;Parent=Phyra77255;constitutive=1;ensembl_phase=1;rank=10 scaffold_23 . CDS 203626 203692 . - 0 ID=Phyra77255;Parent=Phyra77255;rank=9 scaffold_23 . exon 203626 203692 . - . ID=Phyra77255.9;Parent=Phyra77255;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_23 . CDS 203762 204137 . - 0 ID=Phyra77255;Parent=Phyra77255;rank=8 scaffold_23 . exon 203762 204137 . - . ID=Phyra77255.8;Parent=Phyra77255;constitutive=1;ensembl_phase=2;rank=8 scaffold_23 . CDS 204257 204925 . - 0 ID=Phyra77255;Parent=Phyra77255;rank=7 scaffold_23 . exon 204257 204925 . - . ID=Phyra77255.7;Parent=Phyra77255;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_23 . CDS 205001 205237 . - 0 ID=Phyra77255;Parent=Phyra77255;rank=6 scaffold_23 . exon 205001 205237 . - . ID=Phyra77255.6;Parent=Phyra77255;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_23 . CDS 205370 205459 . - 0 ID=Phyra77255;Parent=Phyra77255;rank=5 scaffold_23 . exon 205370 205459 . - . ID=Phyra77255.5;Parent=Phyra77255;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_23 . CDS 205540 206049 . - 0 ID=Phyra77255;Parent=Phyra77255;rank=4 scaffold_23 . exon 205540 206049 . - . ID=Phyra77255.4;Parent=Phyra77255;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_23 . CDS 206118 206197 . - 0 ID=Phyra77255;Parent=Phyra77255;rank=3 scaffold_23 . exon 206118 206197 . - . ID=Phyra77255.3;Parent=Phyra77255;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_23 . CDS 206246 206323 . - 0 ID=Phyra77255;Parent=Phyra77255;rank=2 scaffold_23 . exon 206246 206323 . - . ID=Phyra77255.2;Parent=Phyra77255;constitutive=1;rank=2 scaffold_23 . CDS 206388 207653 . - 0 ID=Phyra77255;Parent=Phyra77255;rank=1 scaffold_23 . exon 206388 207653 . - . ID=Phyra77255.1;Parent=Phyra77255;constitutive=1;rank=1 scaffold_23 . biological_region 209603 209604 0.999 + . logic_name=eponine scaffold_23 . biological_region 210561 210562 0.999 - . logic_name=eponine scaffold_23 . biological_region 211003 211010 0.999 - . logic_name=eponine scaffold_23 ensembl protein_coding_gene 211202 216483 . + . ID=Phyra71501;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_23000011;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 211202 216483 . + . ID=Phyra71501;Parent=Phyra71501;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 211202 211243 . + 0 ID=Phyra71501;Parent=Phyra71501;rank=1 scaffold_23 . exon 211202 211243 . + . ID=Phyra71501.1;Parent=Phyra71501;constitutive=1;rank=1 scaffold_23 . CDS 211366 216483 . + 0 ID=Phyra71501;Parent=Phyra71501;rank=2 scaffold_23 . exon 211366 216483 . + . ID=Phyra71501.2;Parent=Phyra71501;constitutive=1;rank=2 scaffold_23 ensembl protein_coding_gene 208166 210535 . + . ID=Phyra94755;biotype=protein_coding;external_name=C_scaffold_23000031;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 208166 210535 . + . ID=Phyra94755;Parent=Phyra94755;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 208166 208172 . + 0 ID=Phyra94755;Parent=Phyra94755;rank=1 scaffold_23 . exon 208166 208172 . + . ID=Phyra94755.1;Parent=Phyra94755;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 208233 208312 . + 0 ID=Phyra94755;Parent=Phyra94755;rank=2 scaffold_23 . exon 208233 208312 . + . ID=Phyra94755.2;Parent=Phyra94755;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 208387 208485 . + 0 ID=Phyra94755;Parent=Phyra94755;rank=3 scaffold_23 . exon 208387 208485 . + . ID=Phyra94755.3;Parent=Phyra94755;constitutive=1;rank=3 scaffold_23 . CDS 208551 208639 . + 0 ID=Phyra94755;Parent=Phyra94755;rank=4 scaffold_23 . exon 208551 208639 . + . ID=Phyra94755.4;Parent=Phyra94755;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_23 . CDS 208707 208820 . + 0 ID=Phyra94755;Parent=Phyra94755;rank=5 scaffold_23 . exon 208707 208820 . + . ID=Phyra94755.5;Parent=Phyra94755;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_23 . CDS 208877 208947 . + 0 ID=Phyra94755;Parent=Phyra94755;rank=6 scaffold_23 . exon 208877 208947 . + . ID=Phyra94755.6;Parent=Phyra94755;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_23 . CDS 209036 209367 . + 0 ID=Phyra94755;Parent=Phyra94755;rank=7 scaffold_23 . exon 209036 209367 . + . ID=Phyra94755.7;Parent=Phyra94755;constitutive=1;ensembl_phase=1;rank=7 scaffold_23 . CDS 209534 210120 . + 0 ID=Phyra94755;Parent=Phyra94755;rank=8 scaffold_23 . exon 209534 210120 . + . ID=Phyra94755.8;Parent=Phyra94755;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_23 . CDS 210186 210375 . + 0 ID=Phyra94755;Parent=Phyra94755;rank=9 scaffold_23 . exon 210186 210375 . + . ID=Phyra94755.9;Parent=Phyra94755;constitutive=1;ensembl_phase=2;rank=9 scaffold_23 . CDS 210470 210535 . + 0 ID=Phyra94755;Parent=Phyra94755;rank=10 scaffold_23 . exon 210470 210535 . + . ID=Phyra94755.10;Parent=Phyra94755;constitutive=1;rank=10 scaffold_23 . repeat_region 217188 217225 . ? . description=dust scaffold_23 ensembl protein_coding_gene 225430 228242 . - . ID=Phyra94756;biotype=protein_coding;external_name=C_scaffold_23000032;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 225430 228242 . - . ID=Phyra94756;Parent=Phyra94756;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 225430 226850 . - 0 ID=Phyra94756;Parent=Phyra94756;rank=7 scaffold_23 . exon 225430 226850 . - . ID=Phyra94756.7;Parent=Phyra94756;constitutive=1;ensembl_phase=1;rank=7 scaffold_23 . CDS 227040 227163 . - 0 ID=Phyra94756;Parent=Phyra94756;rank=6 scaffold_23 . CDS 227184 227336 . - 0 ID=Phyra94756;Parent=Phyra94756;rank=5 scaffold_23 . CDS 227373 227513 . - 0 ID=Phyra94756;Parent=Phyra94756;rank=4 scaffold_23 . CDS 227580 227998 . - 0 ID=Phyra94756;Parent=Phyra94756;rank=3 scaffold_23 . CDS 228039 228052 . - 0 ID=Phyra94756;Parent=Phyra94756;rank=2 scaffold_23 . CDS 228223 228242 . - 0 ID=Phyra94756;Parent=Phyra94756;rank=1 scaffold_23 . repeat_region 227173 227331 . ? . description=trf scaffold_23 . repeat_region 227311 227394 . ? . description=trf scaffold_23 . repeat_region 227690 227961 . ? . description=trf scaffold_23 . repeat_region 227768 227832 . ? . description=trf scaffold_23 . repeat_region 227896 227970 . ? . description=trf scaffold_23 . biological_region 228847 228851 0.999 + . logic_name=eponine scaffold_23 . biological_region 228894 228897 0.999 + . logic_name=eponine scaffold_23 . biological_region 229413 229421 0.999 + . logic_name=eponine scaffold_23 . biological_region 230840 230841 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 228781 229493 . - . ID=Phyra77259;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000071;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 228781 229493 . - . ID=Phyra77259;Parent=Phyra77259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 228781 229030 . - 0 ID=Phyra77259;Parent=Phyra77259;rank=2 scaffold_23 . exon 228781 229030 . - . ID=Phyra77259.2;Parent=Phyra77259;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 229099 229493 . - 0 ID=Phyra77259;Parent=Phyra77259;rank=1 scaffold_23 . exon 229099 229493 . - . ID=Phyra77259.1;Parent=Phyra77259;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 ensembl protein_coding_gene 229802 231202 . - . ID=Phyra77260;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000072;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 229802 231202 . - . ID=Phyra77260;Parent=Phyra77260;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 229802 231202 . - 0 ID=Phyra77260;Parent=Phyra77260;rank=1 scaffold_23 . exon 229802 231202 . - . ID=Phyra77260.1;Parent=Phyra77260;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 231691 233040 . + . ID=Phyra77261;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000073;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 231691 233040 . + . ID=Phyra77261;Parent=Phyra77261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 231691 233040 . + 0 ID=Phyra77261;Parent=Phyra77261;rank=1 scaffold_23 . exon 231691 233040 . + . ID=Phyra77261.1;Parent=Phyra77261;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 233284 236478 . - . ID=Phyra77262;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000074;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 233284 236478 . - . ID=Phyra77262;Parent=Phyra77262;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 233284 236478 . - 0 ID=Phyra77262;Parent=Phyra77262;rank=1 scaffold_23 . exon 233284 236478 . - . ID=Phyra77262.1;Parent=Phyra77262;constitutive=1;rank=1 scaffold_23 . exon 227040 227163 . - . ID=Phyra94756.6;Parent=Phyra94756;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_23 . exon 227184 227336 . - . ID=Phyra94756.5;Parent=Phyra94756;constitutive=1;rank=5 scaffold_23 . exon 227373 227513 . - . ID=Phyra94756.4;Parent=Phyra94756;constitutive=1;rank=4 scaffold_23 . exon 227580 227998 . - . ID=Phyra94756.3;Parent=Phyra94756;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . exon 228039 228052 . - . ID=Phyra94756.2;Parent=Phyra94756;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_23 . exon 228223 228242 . - . ID=Phyra94756.1;Parent=Phyra94756;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . repeat_region 241623 241672 . ? . description=dust scaffold_23 . repeat_region 243307 243656 . - . description=GypsyPi-1c_I-int scaffold_23 ensembl protein_coding_gene 241064 241609 . + . ID=Phyra77263;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000075;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 241064 241609 . + . ID=Phyra77263;Parent=Phyra77263;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 241064 241316 . + 0 ID=Phyra77263;Parent=Phyra77263;rank=1 scaffold_23 . exon 241064 241316 . + . ID=Phyra77263.1;Parent=Phyra77263;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 241365 241609 . + 0 ID=Phyra77263;Parent=Phyra77263;rank=2 scaffold_23 . exon 241365 241609 . + . ID=Phyra77263.2;Parent=Phyra77263;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . repeat_region 253597 253617 . ? . description=trf scaffold_23 ensembl tRNA_gene 246527 246593 . + . ID=EPrPRAG00000000028;biotype=tRNA;description=tRNA-Phe for anticodon AAA [Source:TRNASCAN_SE%3BAcc:tRNA-Phe];external_name=tRNA-Phe;logic_name=ncrna_eg scaffold_23 ensembl transcript 246527 246593 . + . ID=EPrPRAT00000000028;Parent=EPrPRAG00000000028;biotype=tRNA;logic_name=ncrna_eg scaffold_23 . exon 246527 246593 . + . ID=EPrPRAE00000000028;Parent=EPrPRAT00000000028;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 247111 248799 . - . ID=Phyra77264;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000076;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 247111 248799 . - . ID=Phyra77264;Parent=Phyra77264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 247111 248345 . - 0 ID=Phyra77264;Parent=Phyra77264;rank=3 scaffold_23 . exon 247111 248345 . - . ID=Phyra77264.3;Parent=Phyra77264;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 248607 248609 . - 0 ID=Phyra77264;Parent=Phyra77264;rank=2 scaffold_23 . exon 248607 248609 . - . ID=Phyra77264.2;Parent=Phyra77264;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 248691 248799 . - 0 ID=Phyra77264;Parent=Phyra77264;rank=1 scaffold_23 . exon 248691 248799 . - . ID=Phyra77264.1;Parent=Phyra77264;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . biological_region 256962 256965 0.999 - . logic_name=eponine scaffold_23 . repeat_region 257631 257644 . ? . description=dust scaffold_23 . repeat_region 257721 257752 . ? . description=dust scaffold_23 . repeat_region 258339 258347 . ? . description=dust scaffold_23 . repeat_region 259065 259118 . + . description=(CTCA)n scaffold_23 . repeat_region 259652 259675 . ? . description=dust scaffold_23 . repeat_region 259788 259896 . ? . description=dust scaffold_23 . repeat_region 260505 260512 . ? . description=dust scaffold_23 . repeat_region 260701 260708 . ? . description=dust scaffold_23 . repeat_region 261824 261834 . ? . description=dust scaffold_23 . biological_region 263719 263719 0.999 - . logic_name=eponine scaffold_23 ensembl tRNA_gene 259935 260006 . + . ID=EPrPRAG00000000151;biotype=tRNA;description=tRNA-Thr for anticodon UGU [Source:TRNASCAN_SE%3BAcc:tRNA-Thr];external_name=tRNA-Thr;logic_name=ncrna_eg scaffold_23 ensembl transcript 259935 260006 . + . ID=EPrPRAT00000000151;Parent=EPrPRAG00000000151;biotype=tRNA;logic_name=ncrna_eg scaffold_23 . exon 259935 260006 . + . ID=EPrPRAE00000000151;Parent=EPrPRAT00000000151;constitutive=1;rank=1 scaffold_23 . repeat_region 270555 270608 . + . description=(TGAG)n scaffold_23 . repeat_region 270561 270605 . ? . description=trf scaffold_23 . repeat_region 271425 271468 . ? . description=trf scaffold_23 . repeat_region 273386 273435 . ? . description=trf scaffold_23 . repeat_region 273430 273466 . ? . description=trf scaffold_23 . repeat_region 273466 273493 . ? . description=trf scaffold_23 ensembl tRNA_gene 269268 269339 . - . ID=EPrPRAG00000000002;biotype=tRNA;description=tRNA-Thr for anticodon UGU [Source:TRNASCAN_SE%3BAcc:tRNA-Thr];external_name=tRNA-Thr;logic_name=ncrna_eg scaffold_23 ensembl transcript 269268 269339 . - . ID=EPrPRAT00000000002;Parent=EPrPRAG00000000002;biotype=tRNA;logic_name=ncrna_eg scaffold_23 . exon 269268 269339 . - . ID=EPrPRAE00000000002;Parent=EPrPRAT00000000002;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 267709 268152 . + . ID=Phyra44988;biotype=protein_coding;external_name=gwEuk.23.21.1;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 267709 268152 . + . ID=Phyra44988;Parent=Phyra44988;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 267709 267848 . + 0 ID=Phyra44988;Parent=Phyra44988;rank=1 scaffold_23 . exon 267709 267848 . + . ID=Phyra44988.1;Parent=Phyra44988;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 267909 268152 . + 0 ID=Phyra44988;Parent=Phyra44988;rank=2 scaffold_23 . exon 267909 268152 . + . ID=Phyra44988.2;Parent=Phyra44988;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 ensembl protein_coding_gene 271287 272160 . + . ID=Phyra77265;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000077;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 271287 272160 . + . ID=Phyra77265;Parent=Phyra77265;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 271287 271884 . + 0 ID=Phyra77265;Parent=Phyra77265;rank=1 scaffold_23 . exon 271287 271884 . + . ID=Phyra77265.1;Parent=Phyra77265;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 271944 272031 . + 0 ID=Phyra77265;Parent=Phyra77265;rank=2 scaffold_23 . exon 271944 272031 . + . ID=Phyra77265.2;Parent=Phyra77265;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_23 . CDS 272151 272160 . + 0 ID=Phyra77265;Parent=Phyra77265;rank=3 scaffold_23 . exon 272151 272160 . + . ID=Phyra77265.3;Parent=Phyra77265;constitutive=1;ensembl_phase=2;rank=3 scaffold_23 ensembl protein_coding_gene 272689 273543 . - . ID=Phyra77266;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000078;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 272689 273543 . - . ID=Phyra77266;Parent=Phyra77266;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 272689 273192 . - 0 ID=Phyra77266;Parent=Phyra77266;rank=2 scaffold_23 . exon 272689 273192 . - . ID=Phyra77266.2;Parent=Phyra77266;constitutive=1;rank=2 scaffold_23 . CDS 273532 273543 . - 0 ID=Phyra77266;Parent=Phyra77266;rank=1 scaffold_23 . exon 273532 273543 . - . ID=Phyra77266.1;Parent=Phyra77266;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 275389 276012 . + . ID=Phyra77267;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000079;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 275389 276012 . + . ID=Phyra77267;Parent=Phyra77267;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 275389 276012 . + 0 ID=Phyra77267;Parent=Phyra77267;rank=1 scaffold_23 . exon 275389 276012 . + . ID=Phyra77267.1;Parent=Phyra77267;constitutive=1;rank=1 scaffold_23 . repeat_region 276664 285496 . ? . description=dust scaffold_23 . repeat_region 285497 286714 . ? . description=dust scaffold_23 . repeat_region 287562 300859 . ? . description=dust scaffold_23 . repeat_region 300926 300959 . ? . description=trf scaffold_23 . repeat_region 301499 301524 . ? . description=dust scaffold_23 . repeat_region 301537 301586 . ? . description=dust scaffold_23 . repeat_region 301803 302230 . ? . description=trf scaffold_23 . biological_region 302066 302070 0.999 + . logic_name=eponine scaffold_23 . biological_region 302448 302449 0.999 - . logic_name=eponine scaffold_23 . repeat_region 302941 302990 . ? . description=dust scaffold_23 . repeat_region 303082 303149 . ? . description=dust scaffold_23 . repeat_region 303084 303103 . ? . description=trf scaffold_23 . repeat_region 303103 303139 . ? . description=trf scaffold_23 . repeat_region 303587 303639 . ? . description=trf scaffold_23 . repeat_region 303767 303775 . ? . description=dust scaffold_23 . repeat_region 304785 304818 . ? . description=trf scaffold_23 ensembl tRNA_gene 303197 303268 . + . ID=EPrPRAG00000000125;biotype=tRNA;description=tRNA-Thr for anticodon UGU [Source:TRNASCAN_SE%3BAcc:tRNA-Thr];external_name=tRNA-Thr;logic_name=ncrna_eg scaffold_23 ensembl transcript 303197 303268 . + . ID=EPrPRAT00000000125;Parent=EPrPRAG00000000125;biotype=tRNA;logic_name=ncrna_eg scaffold_23 . exon 303197 303268 . + . ID=EPrPRAE00000000125;Parent=EPrPRAT00000000125;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 314667 315638 . + . ID=Phyra44992;biotype=protein_coding;external_name=gwEuk.23.25.1;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 314667 315638 . + . ID=Phyra44992;Parent=Phyra44992;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 314667 314814 . + 0 ID=Phyra44992;Parent=Phyra44992;rank=1 scaffold_23 . exon 314667 314814 . + . ID=Phyra44992.1;Parent=Phyra44992;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 314866 315638 . + 0 ID=Phyra44992;Parent=Phyra44992;rank=2 scaffold_23 . exon 314866 315638 . + . ID=Phyra44992.2;Parent=Phyra44992;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 ensembl protein_coding_gene 306107 306550 . + . ID=Phyra71502;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_23000012;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 306107 306550 . + . ID=Phyra71502;Parent=Phyra71502;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 306107 306550 . + 0 ID=Phyra71502;Parent=Phyra71502;rank=1 scaffold_23 . exon 306107 306550 . + . ID=Phyra71502.1;Parent=Phyra71502;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 308466 309739 . - . ID=Phyra77269;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000081;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 308466 309739 . - . ID=Phyra77269;Parent=Phyra77269;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 308466 308483 . - 0 ID=Phyra77269;Parent=Phyra77269;rank=4 scaffold_23 . exon 308466 308483 . - . ID=Phyra77269.4;Parent=Phyra77269;constitutive=1;rank=4 scaffold_23 . CDS 308637 308705 . - 0 ID=Phyra77269;Parent=Phyra77269;rank=3 scaffold_23 . exon 308637 308705 . - . ID=Phyra77269.3;Parent=Phyra77269;constitutive=1;rank=3 scaffold_23 . CDS 308727 309179 . - 0 ID=Phyra77269;Parent=Phyra77269;rank=2 scaffold_23 . exon 308727 309179 . - . ID=Phyra77269.2;Parent=Phyra77269;constitutive=1;rank=2 scaffold_23 . CDS 309209 309739 . - 0 ID=Phyra77269;Parent=Phyra77269;rank=1 scaffold_23 . exon 309209 309739 . - . ID=Phyra77269.1;Parent=Phyra77269;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 310527 311526 . + . ID=Phyra77270;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000082;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 310527 311526 . + . ID=Phyra77270;Parent=Phyra77270;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 310527 310914 . + 0 ID=Phyra77270;Parent=Phyra77270;rank=1 scaffold_23 . exon 310527 310914 . + . ID=Phyra77270.1;Parent=Phyra77270;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 311312 311526 . + 0 ID=Phyra77270;Parent=Phyra77270;rank=2 scaffold_23 . exon 311312 311526 . + . ID=Phyra77270.2;Parent=Phyra77270;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . repeat_region 315669 315835 . ? . description=dust scaffold_23 . biological_region 321763 321763 0.999 - . logic_name=eponine scaffold_23 ensembl protein_coding_gene 316897 318106 . + . ID=Phyra77271;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000083;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 316897 318106 . + . ID=Phyra77271;Parent=Phyra77271;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 316897 316901 . + 0 ID=Phyra77271;Parent=Phyra77271;rank=1 scaffold_23 . exon 316897 316901 . + . ID=Phyra77271.1;Parent=Phyra77271;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 316962 317034 . + 0 ID=Phyra77271;Parent=Phyra77271;rank=2 scaffold_23 . exon 316962 317034 . + . ID=Phyra77271.2;Parent=Phyra77271;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 317175 317378 . + 0 ID=Phyra77271;Parent=Phyra77271;rank=3 scaffold_23 . exon 317175 317378 . + . ID=Phyra77271.3;Parent=Phyra77271;constitutive=1;rank=3 scaffold_23 . CDS 317455 317724 . + 0 ID=Phyra77271;Parent=Phyra77271;rank=4 scaffold_23 . exon 317455 317724 . + . ID=Phyra77271.4;Parent=Phyra77271;constitutive=1;rank=4 scaffold_23 . CDS 317801 318011 . + 0 ID=Phyra77271;Parent=Phyra77271;rank=5 scaffold_23 . exon 317801 318011 . + . ID=Phyra77271.5;Parent=Phyra77271;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_23 . CDS 318060 318106 . + 0 ID=Phyra77271;Parent=Phyra77271;rank=6 scaffold_23 . exon 318060 318106 . + . ID=Phyra77271.6;Parent=Phyra77271;constitutive=1;ensembl_phase=1;rank=6 scaffold_23 ensembl protein_coding_gene 318471 323135 . - . ID=Phyra77272;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000084;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 318471 323135 . - . ID=Phyra77272;Parent=Phyra77272;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 318471 321736 . - 0 ID=Phyra77272;Parent=Phyra77272;rank=6 scaffold_23 . exon 318471 321736 . - . ID=Phyra77272.6;Parent=Phyra77272;constitutive=1;ensembl_phase=1;rank=6 scaffold_23 . CDS 321824 321983 . - 0 ID=Phyra77272;Parent=Phyra77272;rank=5 scaffold_23 . exon 321824 321983 . - . ID=Phyra77272.5;Parent=Phyra77272;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_23 . CDS 322137 322373 . - 0 ID=Phyra77272;Parent=Phyra77272;rank=4 scaffold_23 . exon 322137 322373 . - . ID=Phyra77272.4;Parent=Phyra77272;constitutive=1;rank=4 scaffold_23 . CDS 322438 322713 . - 0 ID=Phyra77272;Parent=Phyra77272;rank=3 scaffold_23 . exon 322438 322713 . - . ID=Phyra77272.3;Parent=Phyra77272;constitutive=1;rank=3 scaffold_23 . CDS 322789 322992 . - 0 ID=Phyra77272;Parent=Phyra77272;rank=2 scaffold_23 . exon 322789 322992 . - . ID=Phyra77272.2;Parent=Phyra77272;constitutive=1;rank=2 scaffold_23 . CDS 323061 323135 . - 0 ID=Phyra77272;Parent=Phyra77272;rank=1 scaffold_23 . exon 323061 323135 . - . ID=Phyra77272.1;Parent=Phyra77272;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 323706 324724 . + . ID=Phyra77273;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000085;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 323706 324724 . + . ID=Phyra77273;Parent=Phyra77273;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 323706 323780 . + 0 ID=Phyra77273;Parent=Phyra77273;rank=1 scaffold_23 . exon 323706 323780 . + . ID=Phyra77273.1;Parent=Phyra77273;constitutive=1;rank=1 scaffold_23 . CDS 323849 324052 . + 0 ID=Phyra77273;Parent=Phyra77273;rank=2 scaffold_23 . exon 323849 324052 . + . ID=Phyra77273.2;Parent=Phyra77273;constitutive=1;rank=2 scaffold_23 . CDS 324128 324403 . + 0 ID=Phyra77273;Parent=Phyra77273;rank=3 scaffold_23 . exon 324128 324403 . + . ID=Phyra77273.3;Parent=Phyra77273;constitutive=1;rank=3 scaffold_23 . CDS 324482 324724 . + 0 ID=Phyra77273;Parent=Phyra77273;rank=4 scaffold_23 . exon 324482 324724 . + . ID=Phyra77273.4;Parent=Phyra77273;constitutive=1;rank=4 scaffold_23 ensembl protein_coding_gene 324946 325882 . + . ID=Phyra77274;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000086;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 324946 325882 . + . ID=Phyra77274;Parent=Phyra77274;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 324946 325480 . + 0 ID=Phyra77274;Parent=Phyra77274;rank=1 scaffold_23 . exon 324946 325480 . + . ID=Phyra77274.1;Parent=Phyra77274;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 325734 325882 . + 0 ID=Phyra77274;Parent=Phyra77274;rank=2 scaffold_23 . exon 325734 325882 . + . ID=Phyra77274.2;Parent=Phyra77274;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 ensembl protein_coding_gene 327705 329651 . + . ID=Phyra77275;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000087;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 327705 329651 . + . ID=Phyra77275;Parent=Phyra77275;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 327705 329651 . + 0 ID=Phyra77275;Parent=Phyra77275;rank=1 scaffold_23 . exon 327705 329651 . + . ID=Phyra77275.1;Parent=Phyra77275;constitutive=1;rank=1 scaffold_23 . biological_region 343268 343270 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 340395 343519 . + . ID=Phyra77278;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000090;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 340395 343519 . + . ID=Phyra77278;Parent=Phyra77278;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 340395 340436 . + 0 ID=Phyra77278;Parent=Phyra77278;rank=1 scaffold_23 . exon 340395 340436 . + . ID=Phyra77278.1;Parent=Phyra77278;constitutive=1;rank=1 scaffold_23 . CDS 340565 343519 . + 0 ID=Phyra77278;Parent=Phyra77278;rank=2 scaffold_23 . exon 340565 343519 . + . ID=Phyra77278.2;Parent=Phyra77278;constitutive=1;rank=2 scaffold_23 ensembl protein_coding_gene 343650 344510 . - . ID=Phyra77279;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000091;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 343650 344510 . - . ID=Phyra77279;Parent=Phyra77279;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 343650 344510 . - 0 ID=Phyra77279;Parent=Phyra77279;rank=1 scaffold_23 . exon 343650 344510 . - . ID=Phyra77279.1;Parent=Phyra77279;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 335208 338257 . - . ID=Phyra94760;biotype=protein_coding;external_name=C_scaffold_23000036;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 335208 338257 . - . ID=Phyra94760;Parent=Phyra94760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 335208 335262 . - 0 ID=Phyra94760;Parent=Phyra94760;rank=6 scaffold_23 . exon 335208 335262 . - . ID=Phyra94760.6;Parent=Phyra94760;constitutive=1;ensembl_phase=2;rank=6 scaffold_23 . CDS 335335 335477 . - 0 ID=Phyra94760;Parent=Phyra94760;rank=5 scaffold_23 . exon 335335 335477 . - . ID=Phyra94760.5;Parent=Phyra94760;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_23 . CDS 335560 336622 . - 0 ID=Phyra94760;Parent=Phyra94760;rank=4 scaffold_23 . exon 335560 336622 . - . ID=Phyra94760.4;Parent=Phyra94760;constitutive=1;ensembl_phase=2;rank=4 scaffold_23 . CDS 336719 337806 . - 0 ID=Phyra94760;Parent=Phyra94760;rank=3 scaffold_23 . exon 336719 337806 . - . ID=Phyra94760.3;Parent=Phyra94760;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_23 . CDS 337882 338066 . - 0 ID=Phyra94760;Parent=Phyra94760;rank=2 scaffold_23 . exon 337882 338066 . - . ID=Phyra94760.2;Parent=Phyra94760;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 338137 338257 . - 0 ID=Phyra94760;Parent=Phyra94760;rank=1 scaffold_23 . exon 338137 338257 . - . ID=Phyra94760.1;Parent=Phyra94760;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 338497 339481 . + . ID=Phyra94761;biotype=protein_coding;external_name=C_scaffold_23000037;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 338497 339481 . + . ID=Phyra94761;Parent=Phyra94761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 338497 338698 . + 0 ID=Phyra94761;Parent=Phyra94761;rank=1 scaffold_23 . exon 338497 338698 . + . ID=Phyra94761.1;Parent=Phyra94761;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 338768 338941 . + 0 ID=Phyra94761;Parent=Phyra94761;rank=2 scaffold_23 . exon 338768 338941 . + . ID=Phyra94761.2;Parent=Phyra94761;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 339025 339133 . + 0 ID=Phyra94761;Parent=Phyra94761;rank=3 scaffold_23 . exon 339025 339133 . + . ID=Phyra94761.3;Parent=Phyra94761;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_23 . CDS 339208 339278 . + 0 ID=Phyra94761;Parent=Phyra94761;rank=4 scaffold_23 . exon 339208 339278 . + . ID=Phyra94761.4;Parent=Phyra94761;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_23 . CDS 339351 339481 . + 0 ID=Phyra94761;Parent=Phyra94761;rank=5 scaffold_23 . exon 339351 339481 . + . ID=Phyra94761.5;Parent=Phyra94761;constitutive=1;ensembl_phase=1;rank=5 scaffold_23 . repeat_region 347622 347636 . ? . description=dust scaffold_23 . repeat_region 349098 349161 . ? . description=trf scaffold_23 . repeat_region 349452 349492 . ? . description=trf scaffold_23 . repeat_region 349474 349570 . ? . description=trf scaffold_23 . repeat_region 349483 349544 . ? . description=dust scaffold_23 . repeat_region 349536 349616 . ? . description=trf scaffold_23 . repeat_region 349561 349653 . ? . description=trf scaffold_23 . repeat_region 350681 350713 . ? . description=trf scaffold_23 . repeat_region 350681 350713 . ? . description=dust scaffold_23 . repeat_region 350930 350976 . ? . description=trf scaffold_23 . repeat_region 351019 351088 . ? . description=trf scaffold_23 . repeat_region 351019 351088 . ? . description=dust scaffold_23 . repeat_region 351020 351088 . ? . description=trf scaffold_23 . repeat_region 353207 353214 . ? . description=dust scaffold_23 . repeat_region 353968 353976 . ? . description=dust scaffold_23 ensembl protein_coding_gene 345225 346577 . - . ID=Phyra77280;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000092;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 345225 346577 . - . ID=Phyra77280;Parent=Phyra77280;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 345225 346577 . - 0 ID=Phyra77280;Parent=Phyra77280;rank=1 scaffold_23 . exon 345225 346577 . - . ID=Phyra77280.1;Parent=Phyra77280;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 348671 351118 . + . ID=Phyra77281;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000093;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 348671 351118 . + . ID=Phyra77281;Parent=Phyra77281;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 348671 348717 . + 0 ID=Phyra77281;Parent=Phyra77281;rank=1 scaffold_23 . exon 348671 348717 . + . ID=Phyra77281.1;Parent=Phyra77281;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 348804 348929 . + 0 ID=Phyra77281;Parent=Phyra77281;rank=2 scaffold_23 . exon 348804 348929 . + . ID=Phyra77281.2;Parent=Phyra77281;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_23 . CDS 349005 349219 . + 0 ID=Phyra77281;Parent=Phyra77281;rank=3 scaffold_23 . exon 349005 349219 . + . ID=Phyra77281.3;Parent=Phyra77281;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_23 . CDS 349279 349722 . + 0 ID=Phyra77281;Parent=Phyra77281;rank=4 scaffold_23 . exon 349279 349722 . + . ID=Phyra77281.4;Parent=Phyra77281;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 349786 349880 . + 0 ID=Phyra77281;Parent=Phyra77281;rank=5 scaffold_23 . exon 349786 349880 . + . ID=Phyra77281.5;Parent=Phyra77281;constitutive=1;ensembl_phase=1;rank=5 scaffold_23 . CDS 349955 350042 . + 0 ID=Phyra77281;Parent=Phyra77281;rank=6 scaffold_23 . exon 349955 350042 . + . ID=Phyra77281.6;Parent=Phyra77281;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_23 . CDS 350109 351118 . + 0 ID=Phyra77281;Parent=Phyra77281;rank=7 scaffold_23 . exon 350109 351118 . + . ID=Phyra77281.7;Parent=Phyra77281;constitutive=1;ensembl_phase=1;rank=7 scaffold_23 ensembl protein_coding_gene 351731 352586 . - . ID=Phyra77282;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000094;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 351731 352586 . - . ID=Phyra77282;Parent=Phyra77282;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 351731 352407 . - 0 ID=Phyra77282;Parent=Phyra77282;rank=2 scaffold_23 . exon 351731 352407 . - . ID=Phyra77282.2;Parent=Phyra77282;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 352490 352586 . - 0 ID=Phyra77282;Parent=Phyra77282;rank=1 scaffold_23 . exon 352490 352586 . - . ID=Phyra77282.1;Parent=Phyra77282;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 360687 364658 . - . ID=Phyra94762;biotype=protein_coding;external_name=C_scaffold_23000038;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 360687 364658 . - . ID=Phyra94762;Parent=Phyra94762;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 360687 360739 . - 0 ID=Phyra94762;Parent=Phyra94762;rank=13 scaffold_23 . exon 360687 360739 . - . ID=Phyra94762.13;Parent=Phyra94762;constitutive=1;ensembl_phase=1;rank=13 scaffold_23 . CDS 360863 361046 . - 0 ID=Phyra94762;Parent=Phyra94762;rank=12 scaffold_23 . exon 360863 361046 . - . ID=Phyra94762.12;Parent=Phyra94762;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_23 . CDS 361183 361287 . - 0 ID=Phyra94762;Parent=Phyra94762;rank=11 scaffold_23 . exon 361183 361287 . - . ID=Phyra94762.11;Parent=Phyra94762;constitutive=1;rank=11 scaffold_23 . CDS 361351 361589 . - 0 ID=Phyra94762;Parent=Phyra94762;rank=10 scaffold_23 . exon 361351 361589 . - . ID=Phyra94762.10;Parent=Phyra94762;constitutive=1;ensembl_phase=1;rank=10 scaffold_23 . CDS 361716 361753 . - 0 ID=Phyra94762;Parent=Phyra94762;rank=9 scaffold_23 . exon 361716 361753 . - . ID=Phyra94762.9;Parent=Phyra94762;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_23 . CDS 362010 362178 . - 0 ID=Phyra94762;Parent=Phyra94762;rank=8 scaffold_23 . exon 362010 362178 . - . ID=Phyra94762.8;Parent=Phyra94762;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_23 . CDS 362916 362928 . - 0 ID=Phyra94762;Parent=Phyra94762;rank=7 scaffold_23 . exon 362916 362928 . - . ID=Phyra94762.7;Parent=Phyra94762;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_23 . CDS 363084 363324 . - 0 ID=Phyra94762;Parent=Phyra94762;rank=6 scaffold_23 . exon 363084 363324 . - . ID=Phyra94762.6;Parent=Phyra94762;constitutive=1;ensembl_phase=2;rank=6 scaffold_23 . CDS 363361 363697 . - 0 ID=Phyra94762;Parent=Phyra94762;rank=5 scaffold_23 . exon 363361 363697 . - . ID=Phyra94762.5;Parent=Phyra94762;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_23 . CDS 363733 363782 . - 0 ID=Phyra94762;Parent=Phyra94762;rank=4 scaffold_23 . exon 363733 363782 . - . ID=Phyra94762.4;Parent=Phyra94762;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_23 . CDS 363958 364010 . - 0 ID=Phyra94762;Parent=Phyra94762;rank=3 scaffold_23 . exon 363958 364010 . - . ID=Phyra94762.3;Parent=Phyra94762;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_23 . CDS 364041 364198 . - 0 ID=Phyra94762;Parent=Phyra94762;rank=2 scaffold_23 . exon 364041 364198 . - . ID=Phyra94762.2;Parent=Phyra94762;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 364223 364658 . - 0 ID=Phyra94762;Parent=Phyra94762;rank=1 scaffold_23 . exon 364223 364658 . - . ID=Phyra94762.1;Parent=Phyra94762;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . repeat_region 369145 369180 . ? . description=trf scaffold_23 ensembl protein_coding_gene 370086 371360 . + . ID=Phyra71503;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_23000013;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 370086 371360 . + . ID=Phyra71503;Parent=Phyra71503;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 370086 371360 . + 0 ID=Phyra71503;Parent=Phyra71503;rank=1 scaffold_23 . exon 370086 371360 . + . ID=Phyra71503.1;Parent=Phyra71503;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 366349 369689 . - . ID=Phyra77285;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000097;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 366349 369689 . - . ID=Phyra77285;Parent=Phyra77285;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 366349 366368 . - 0 ID=Phyra77285;Parent=Phyra77285;rank=3 scaffold_23 . exon 366349 366368 . - . ID=Phyra77285.3;Parent=Phyra77285;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 366431 369275 . - 0 ID=Phyra77285;Parent=Phyra77285;rank=2 scaffold_23 . exon 366431 369275 . - . ID=Phyra77285.2;Parent=Phyra77285;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_23 . CDS 369342 369689 . - 0 ID=Phyra77285;Parent=Phyra77285;rank=1 scaffold_23 . exon 369342 369689 . - . ID=Phyra77285.1;Parent=Phyra77285;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 373205 374464 . + . ID=Phyra77287;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000099;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 373205 374464 . + . ID=Phyra77287;Parent=Phyra77287;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 373205 374464 . + 0 ID=Phyra77287;Parent=Phyra77287;rank=1 scaffold_23 . exon 373205 374464 . + . ID=Phyra77287.1;Parent=Phyra77287;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 364898 366198 . + . ID=Phyra94763;biotype=protein_coding;external_name=C_scaffold_23000039;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 364898 366198 . + . ID=Phyra94763;Parent=Phyra94763;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 364898 364953 . + 0 ID=Phyra94763;Parent=Phyra94763;rank=1 scaffold_23 . exon 364898 364953 . + . ID=Phyra94763.1;Parent=Phyra94763;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 365025 365824 . + 0 ID=Phyra94763;Parent=Phyra94763;rank=2 scaffold_23 . exon 365025 365824 . + . ID=Phyra94763.2;Parent=Phyra94763;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 365870 366198 . + 0 ID=Phyra94763;Parent=Phyra94763;rank=3 scaffold_23 . exon 365870 366198 . + . ID=Phyra94763.3;Parent=Phyra94763;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 ensembl protein_coding_gene 381501 382426 . + . ID=Phyra45002;biotype=protein_coding;external_name=gwEuk.23.35.1;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 381501 382426 . + . ID=Phyra45002;Parent=Phyra45002;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 381501 381998 . + 0 ID=Phyra45002;Parent=Phyra45002;rank=1 scaffold_23 . exon 381501 381998 . + . ID=Phyra45002.1;Parent=Phyra45002;constitutive=1;rank=1 scaffold_23 . CDS 382070 382228 . + 0 ID=Phyra45002;Parent=Phyra45002;rank=2 scaffold_23 . exon 382070 382228 . + . ID=Phyra45002.2;Parent=Phyra45002;constitutive=1;rank=2 scaffold_23 . CDS 382301 382426 . + 0 ID=Phyra45002;Parent=Phyra45002;rank=3 scaffold_23 . exon 382301 382426 . + . ID=Phyra45002.3;Parent=Phyra45002;constitutive=1;rank=3 scaffold_23 ensembl protein_coding_gene 375126 376448 . + . ID=Phyra77288;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000100;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 375126 376448 . + . ID=Phyra77288;Parent=Phyra77288;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 375126 376448 . + 0 ID=Phyra77288;Parent=Phyra77288;rank=1 scaffold_23 . exon 375126 376448 . + . ID=Phyra77288.1;Parent=Phyra77288;constitutive=1;rank=1 scaffold_23 . repeat_region 390826 390865 . ? . description=trf scaffold_23 . repeat_region 390826 390884 . ? . description=trf scaffold_23 . biological_region 390903 390906 0.999 - . logic_name=eponine scaffold_23 . repeat_region 391785 391806 . ? . description=trf scaffold_23 . repeat_region 391785 391806 . ? . description=dust scaffold_23 ensembl protein_coding_gene 384485 385414 . + . ID=Phyra77290;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000102;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 384485 385414 . + . ID=Phyra77290;Parent=Phyra77290;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 384485 385414 . + 0 ID=Phyra77290;Parent=Phyra77290;rank=1 scaffold_23 . exon 384485 385414 . + . ID=Phyra77290.1;Parent=Phyra77290;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 386136 387027 . + . ID=Phyra77291;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000103;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 386136 387027 . + . ID=Phyra77291;Parent=Phyra77291;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 386136 386513 . + 0 ID=Phyra77291;Parent=Phyra77291;rank=1 scaffold_23 . exon 386136 386513 . + . ID=Phyra77291.1;Parent=Phyra77291;constitutive=1;rank=1 scaffold_23 . CDS 386578 386752 . + 0 ID=Phyra77291;Parent=Phyra77291;rank=2 scaffold_23 . exon 386578 386752 . + . ID=Phyra77291.2;Parent=Phyra77291;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_23 . CDS 386822 387027 . + 0 ID=Phyra77291;Parent=Phyra77291;rank=3 scaffold_23 . exon 386822 387027 . + . ID=Phyra77291.3;Parent=Phyra77291;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 ensembl protein_coding_gene 388345 388976 . - . ID=Phyra77292;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000104;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 388345 388976 . - . ID=Phyra77292;Parent=Phyra77292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 388345 388408 . - 0 ID=Phyra77292;Parent=Phyra77292;rank=2 scaffold_23 . exon 388345 388408 . - . ID=Phyra77292.2;Parent=Phyra77292;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 388441 388976 . - 0 ID=Phyra77292;Parent=Phyra77292;rank=1 scaffold_23 . exon 388441 388976 . - . ID=Phyra77292.1;Parent=Phyra77292;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 ensembl protein_coding_gene 390198 391106 . + . ID=Phyra77293;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000105;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 390198 391106 . + . ID=Phyra77293;Parent=Phyra77293;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 390198 391106 . + 0 ID=Phyra77293;Parent=Phyra77293;rank=1 scaffold_23 . exon 390198 391106 . + . ID=Phyra77293.1;Parent=Phyra77293;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 392147 392695 . + . ID=Phyra77294;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000106;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 392147 392695 . + . ID=Phyra77294;Parent=Phyra77294;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 392147 392695 . + 0 ID=Phyra77294;Parent=Phyra77294;rank=1 scaffold_23 . exon 392147 392695 . + . ID=Phyra77294.1;Parent=Phyra77294;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 393100 395163 . + . ID=Phyra77295;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000107;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 393100 395163 . + . ID=Phyra77295;Parent=Phyra77295;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 393100 395163 . + 0 ID=Phyra77295;Parent=Phyra77295;rank=1 scaffold_23 . exon 393100 395163 . + . ID=Phyra77295.1;Parent=Phyra77295;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 395272 396336 . - . ID=Phyra77296;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000108;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 395272 396336 . - . ID=Phyra77296;Parent=Phyra77296;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 395272 396336 . - 0 ID=Phyra77296;Parent=Phyra77296;rank=1 scaffold_23 . exon 395272 396336 . - . ID=Phyra77296.1;Parent=Phyra77296;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 399951 401828 . + . ID=Phyra77297;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000109;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 399951 401828 . + . ID=Phyra77297;Parent=Phyra77297;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 399951 400441 . + 0 ID=Phyra77297;Parent=Phyra77297;rank=1 scaffold_23 . exon 399951 400441 . + . ID=Phyra77297.1;Parent=Phyra77297;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 400563 400984 . + 0 ID=Phyra77297;Parent=Phyra77297;rank=2 scaffold_23 . exon 400563 400984 . + . ID=Phyra77297.2;Parent=Phyra77297;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 401262 401275 . + 0 ID=Phyra77297;Parent=Phyra77297;rank=3 scaffold_23 . exon 401262 401275 . + . ID=Phyra77297.3;Parent=Phyra77297;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 401493 401550 . + 0 ID=Phyra77297;Parent=Phyra77297;rank=4 scaffold_23 . exon 401493 401550 . + . ID=Phyra77297.4;Parent=Phyra77297;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_23 . CDS 401731 401764 . + 0 ID=Phyra77297;Parent=Phyra77297;rank=5 scaffold_23 . exon 401731 401764 . + . ID=Phyra77297.5;Parent=Phyra77297;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_23 . CDS 401807 401828 . + 0 ID=Phyra77297;Parent=Phyra77297;rank=6 scaffold_23 . exon 401807 401828 . + . ID=Phyra77297.6;Parent=Phyra77297;constitutive=1;ensembl_phase=2;rank=6 scaffold_23 . repeat_region 407498 407547 . ? . description=dust scaffold_23 . repeat_region 410666 410715 . ? . description=dust scaffold_23 . repeat_region 410976 410984 . ? . description=dust scaffold_23 . biological_region 413134 413136 0.999 - . logic_name=eponine scaffold_23 . biological_region 413160 413164 0.999 - . logic_name=eponine scaffold_23 . biological_region 413216 413218 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 412806 414491 . - . ID=Phyra77299;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000111;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 412806 414491 . - . ID=Phyra77299;Parent=Phyra77299;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 412806 414218 . - 0 ID=Phyra77299;Parent=Phyra77299;rank=2 scaffold_23 . exon 412806 414218 . - . ID=Phyra77299.2;Parent=Phyra77299;constitutive=1;rank=2 scaffold_23 . CDS 414402 414491 . - 0 ID=Phyra77299;Parent=Phyra77299;rank=1 scaffold_23 ensembl protein_coding_gene 411446 412397 . + . ID=Phyra94764;biotype=protein_coding;external_name=C_scaffold_23000040;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 411446 412397 . + . ID=Phyra94764;Parent=Phyra94764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 411446 411500 . + 0 ID=Phyra94764;Parent=Phyra94764;rank=1 scaffold_23 . exon 411446 411500 . + . ID=Phyra94764.1;Parent=Phyra94764;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 411564 411718 . + 0 ID=Phyra94764;Parent=Phyra94764;rank=2 scaffold_23 . exon 411564 411718 . + . ID=Phyra94764.2;Parent=Phyra94764;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 411783 411861 . + 0 ID=Phyra94764;Parent=Phyra94764;rank=3 scaffold_23 . exon 411783 411861 . + . ID=Phyra94764.3;Parent=Phyra94764;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_23 . CDS 411939 412198 . + 0 ID=Phyra94764;Parent=Phyra94764;rank=4 scaffold_23 . exon 411939 412198 . + . ID=Phyra94764.4;Parent=Phyra94764;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 412258 412314 . + 0 ID=Phyra94764;Parent=Phyra94764;rank=5 scaffold_23 . exon 412258 412314 . + . ID=Phyra94764.5;Parent=Phyra94764;constitutive=1;rank=5 scaffold_23 . CDS 412383 412397 . + 0 ID=Phyra94764;Parent=Phyra94764;rank=6 scaffold_23 . exon 412383 412397 . + . ID=Phyra94764.6;Parent=Phyra94764;constitutive=1;rank=6 scaffold_23 ensembl protein_coding_gene 422602 423616 . + . ID=Phyra45006;biotype=protein_coding;external_name=gwEuk.23.39.1;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 422602 423616 . + . ID=Phyra45006;Parent=Phyra45006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 422602 422677 . + 0 ID=Phyra45006;Parent=Phyra45006;rank=1 scaffold_23 . exon 422602 422677 . + . ID=Phyra45006.1;Parent=Phyra45006;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 422748 422842 . + 0 ID=Phyra45006;Parent=Phyra45006;rank=2 scaffold_23 . exon 422748 422842 . + . ID=Phyra45006.2;Parent=Phyra45006;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 422901 422979 . + 0 ID=Phyra45006;Parent=Phyra45006;rank=3 scaffold_23 . exon 422901 422979 . + . ID=Phyra45006.3;Parent=Phyra45006;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_23 . CDS 423043 423326 . + 0 ID=Phyra45006;Parent=Phyra45006;rank=4 scaffold_23 . exon 423043 423326 . + . ID=Phyra45006.4;Parent=Phyra45006;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 423395 423616 . + 0 ID=Phyra45006;Parent=Phyra45006;rank=5 scaffold_23 . exon 414402 414491 . - . ID=Phyra77299.1;Parent=Phyra77299;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 415582 418687 . - . ID=Phyra77300;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000112;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 415582 418687 . - . ID=Phyra77300;Parent=Phyra77300;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 415582 417669 . - 0 ID=Phyra77300;Parent=Phyra77300;rank=4 scaffold_23 . exon 415582 417669 . - . ID=Phyra77300.4;Parent=Phyra77300;constitutive=1;rank=4 scaffold_23 . CDS 417923 418122 . - 0 ID=Phyra77300;Parent=Phyra77300;rank=3 scaffold_23 . exon 417923 418122 . - . ID=Phyra77300.3;Parent=Phyra77300;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 418192 418519 . - 0 ID=Phyra77300;Parent=Phyra77300;rank=2 scaffold_23 . exon 418192 418519 . - . ID=Phyra77300.2;Parent=Phyra77300;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_23 . CDS 418592 418687 . - 0 ID=Phyra77300;Parent=Phyra77300;rank=1 scaffold_23 . exon 418592 418687 . - . ID=Phyra77300.1;Parent=Phyra77300;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 418904 420265 . + . ID=Phyra77301;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000113;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 418904 420265 . + . ID=Phyra77301;Parent=Phyra77301;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 418904 420265 . + 0 ID=Phyra77301;Parent=Phyra77301;rank=1 scaffold_23 . exon 418904 420265 . + . ID=Phyra77301.1;Parent=Phyra77301;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 420384 421427 . - . ID=Phyra77302;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000114;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 420384 421427 . - . ID=Phyra77302;Parent=Phyra77302;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 420384 421427 . - 0 ID=Phyra77302;Parent=Phyra77302;rank=1 scaffold_23 . exon 420384 421427 . - . ID=Phyra77302.1;Parent=Phyra77302;constitutive=1;rank=1 scaffold_23 . biological_region 425267 425270 0.999 + . logic_name=eponine scaffold_23 . biological_region 426544 426547 0.999 - . logic_name=eponine scaffold_23 . biological_region 431140 431142 0.999 + . logic_name=eponine scaffold_23 . biological_region 431189 431193 0.999 - . logic_name=eponine scaffold_23 . biological_region 432411 432416 0.999 - . logic_name=eponine scaffold_23 . exon 423395 423616 . + . ID=Phyra45006.5;Parent=Phyra45006;constitutive=1;rank=5 scaffold_23 ensembl protein_coding_gene 424961 432270 . - . ID=Phyra77304;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000116;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 424961 432270 . - . ID=Phyra77304;Parent=Phyra77304;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 424961 425427 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=23 scaffold_23 . exon 424961 425427 . - . ID=Phyra77304.23;Parent=Phyra77304;constitutive=1;ensembl_phase=1;rank=23 scaffold_23 . CDS 425486 425618 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=22 scaffold_23 . exon 425486 425618 . - . ID=Phyra77304.22;Parent=Phyra77304;constitutive=1;ensembl_end_phase=1;rank=22 scaffold_23 . CDS 425735 425805 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=21 scaffold_23 . exon 425735 425805 . - . ID=Phyra77304.21;Parent=Phyra77304;constitutive=1;ensembl_phase=1;rank=21 scaffold_23 . CDS 426050 426135 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=20 scaffold_23 . exon 426050 426135 . - . ID=Phyra77304.20;Parent=Phyra77304;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=20 scaffold_23 . CDS 426215 426291 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=19 scaffold_23 . exon 426215 426291 . - . ID=Phyra77304.19;Parent=Phyra77304;constitutive=1;ensembl_end_phase=2;rank=19 scaffold_23 . CDS 426360 427067 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=18 scaffold_23 . exon 426360 427067 . - . ID=Phyra77304.18;Parent=Phyra77304;constitutive=1;rank=18 scaffold_23 . CDS 427132 427347 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=17 scaffold_23 . exon 427132 427347 . - . ID=Phyra77304.17;Parent=Phyra77304;constitutive=1;rank=17 scaffold_23 . CDS 427569 427745 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=16 scaffold_23 . exon 427569 427745 . - . ID=Phyra77304.16;Parent=Phyra77304;constitutive=1;rank=16 scaffold_23 . CDS 427940 427970 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=15 scaffold_23 . exon 427940 427970 . - . ID=Phyra77304.15;Parent=Phyra77304;constitutive=1;ensembl_phase=2;rank=15 scaffold_23 . CDS 428040 428569 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=14 scaffold_23 . exon 428040 428569 . - . ID=Phyra77304.14;Parent=Phyra77304;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_23 . CDS 428628 428740 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=13 scaffold_23 . exon 428628 428740 . - . ID=Phyra77304.13;Parent=Phyra77304;constitutive=1;ensembl_phase=1;rank=13 scaffold_23 . CDS 428798 428943 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=12 scaffold_23 . exon 428798 428943 . - . ID=Phyra77304.12;Parent=Phyra77304;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_23 . CDS 429007 429191 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=11 scaffold_23 . exon 429007 429191 . - . ID=Phyra77304.11;Parent=Phyra77304;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_23 . CDS 429271 429423 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=10 scaffold_23 . exon 429271 429423 . - . ID=Phyra77304.10;Parent=Phyra77304;constitutive=1;rank=10 scaffold_23 . CDS 429486 429553 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=9 scaffold_23 . exon 429486 429553 . - . ID=Phyra77304.9;Parent=Phyra77304;constitutive=1;ensembl_phase=1;rank=9 scaffold_23 . CDS 429630 429759 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=8 scaffold_23 . exon 429630 429759 . - . ID=Phyra77304.8;Parent=Phyra77304;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_23 . CDS 429823 430919 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=7 scaffold_23 . exon 429823 430919 . - . ID=Phyra77304.7;Parent=Phyra77304;constitutive=1;ensembl_phase=1;rank=7 scaffold_23 . CDS 430988 431263 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=6 scaffold_23 . exon 430988 431263 . - . ID=Phyra77304.6;Parent=Phyra77304;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_23 . CDS 431331 431409 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=5 scaffold_23 . exon 431331 431409 . - . ID=Phyra77304.5;Parent=Phyra77304;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_23 . CDS 431480 431572 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=4 scaffold_23 . exon 431480 431572 . - . ID=Phyra77304.4;Parent=Phyra77304;constitutive=1;rank=4 scaffold_23 . CDS 431653 431790 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=3 scaffold_23 . exon 431653 431790 . - . ID=Phyra77304.3;Parent=Phyra77304;constitutive=1;rank=3 scaffold_23 . CDS 431868 432210 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=2 scaffold_23 . exon 431868 432210 . - . ID=Phyra77304.2;Parent=Phyra77304;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 432248 432270 . - 0 ID=Phyra77304;Parent=Phyra77304;rank=1 scaffold_23 . exon 432248 432270 . - . ID=Phyra77304.1;Parent=Phyra77304;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 ensembl protein_coding_gene 432819 433456 . + . ID=Phyra94768;biotype=protein_coding;external_name=C_scaffold_23000044;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 432819 433456 . + . ID=Phyra94768;Parent=Phyra94768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 432819 432821 . + 0 ID=Phyra94768;Parent=Phyra94768;rank=1 scaffold_23 . exon 432819 432821 . + . ID=Phyra94768.1;Parent=Phyra94768;constitutive=1;rank=1 scaffold_23 . CDS 432901 433124 . + 0 ID=Phyra94768;Parent=Phyra94768;rank=2 scaffold_23 . exon 432901 433124 . + . ID=Phyra94768.2;Parent=Phyra94768;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_23 . CDS 433216 433456 . + 0 ID=Phyra94768;Parent=Phyra94768;rank=3 scaffold_23 ensembl protein_coding_gene 434542 435107 . - . ID=Phyra77306;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000118;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 434542 435107 . - . ID=Phyra77306;Parent=Phyra77306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 434542 434755 . - 0 ID=Phyra77306;Parent=Phyra77306;rank=3 scaffold_23 . exon 434542 434755 . - . ID=Phyra77306.3;Parent=Phyra77306;constitutive=1;ensembl_phase=2;rank=3 scaffold_23 . CDS 434820 434890 . - 0 ID=Phyra77306;Parent=Phyra77306;rank=2 scaffold_23 . exon 434820 434890 . - . ID=Phyra77306.2;Parent=Phyra77306;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_23 . CDS 434949 435107 . - 0 ID=Phyra77306;Parent=Phyra77306;rank=1 scaffold_23 . exon 434949 435107 . - . ID=Phyra77306.1;Parent=Phyra77306;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 435687 438690 . + . ID=Phyra77307;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000119;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 435687 438690 . + . ID=Phyra77307;Parent=Phyra77307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 435687 435905 . + 0 ID=Phyra77307;Parent=Phyra77307;rank=1 scaffold_23 . exon 435687 435905 . + . ID=Phyra77307.1;Parent=Phyra77307;constitutive=1;rank=1 scaffold_23 . CDS 435960 436031 . + 0 ID=Phyra77307;Parent=Phyra77307;rank=2 scaffold_23 . exon 435960 436031 . + . ID=Phyra77307.2;Parent=Phyra77307;constitutive=1;rank=2 scaffold_23 . CDS 436096 436221 . + 0 ID=Phyra77307;Parent=Phyra77307;rank=3 scaffold_23 . exon 436096 436221 . + . ID=Phyra77307.3;Parent=Phyra77307;constitutive=1;rank=3 scaffold_23 . CDS 436282 438690 . + 0 ID=Phyra77307;Parent=Phyra77307;rank=4 scaffold_23 . exon 436282 438690 . + . ID=Phyra77307.4;Parent=Phyra77307;constitutive=1;rank=4 scaffold_23 ensembl protein_coding_gene 438873 439768 . - . ID=Phyra77308;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000120;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 438873 439768 . - . ID=Phyra77308;Parent=Phyra77308;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 438873 438875 . - 0 ID=Phyra77308;Parent=Phyra77308;rank=2 scaffold_23 . exon 438873 438875 . - . ID=Phyra77308.2;Parent=Phyra77308;constitutive=1;rank=2 scaffold_23 . CDS 438953 439768 . - 0 ID=Phyra77308;Parent=Phyra77308;rank=1 scaffold_23 . exon 438953 439768 . - . ID=Phyra77308.1;Parent=Phyra77308;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 440528 442363 . + . ID=Phyra77309;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000121;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 440528 442363 . + . ID=Phyra77309;Parent=Phyra77309;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 440528 440594 . + 0 ID=Phyra77309;Parent=Phyra77309;rank=1 scaffold_23 . exon 440528 440594 . + . ID=Phyra77309.1;Parent=Phyra77309;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 440674 440879 . + 0 ID=Phyra77309;Parent=Phyra77309;rank=2 scaffold_23 . exon 440674 440879 . + . ID=Phyra77309.2;Parent=Phyra77309;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 440957 441103 . + 0 ID=Phyra77309;Parent=Phyra77309;rank=3 scaffold_23 . exon 440957 441103 . + . ID=Phyra77309.3;Parent=Phyra77309;constitutive=1;rank=3 scaffold_23 . CDS 441292 441443 . + 0 ID=Phyra77309;Parent=Phyra77309;rank=4 scaffold_23 . exon 441292 441443 . + . ID=Phyra77309.4;Parent=Phyra77309;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_23 . CDS 441509 441672 . + 0 ID=Phyra77309;Parent=Phyra77309;rank=5 scaffold_23 . exon 441509 441672 . + . ID=Phyra77309.5;Parent=Phyra77309;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_23 . CDS 441843 441988 . + 0 ID=Phyra77309;Parent=Phyra77309;rank=6 scaffold_23 . exon 441843 441988 . + . ID=Phyra77309.6;Parent=Phyra77309;constitutive=1;ensembl_phase=1;rank=6 scaffold_23 . CDS 442061 442363 . + 0 ID=Phyra77309;Parent=Phyra77309;rank=7 scaffold_23 . exon 442061 442363 . + . ID=Phyra77309.7;Parent=Phyra77309;constitutive=1;rank=7 scaffold_23 . exon 433216 433456 . + . ID=Phyra94768.3;Parent=Phyra94768;constitutive=1;ensembl_phase=2;rank=3 scaffold_23 ensembl protein_coding_gene 442803 444744 . - . ID=Phyra94771;biotype=protein_coding;external_name=C_scaffold_23000047;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 442803 444744 . - . ID=Phyra94771;Parent=Phyra94771;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 442803 443407 . - 0 ID=Phyra94771;Parent=Phyra94771;rank=6 scaffold_23 . exon 442803 443407 . - . ID=Phyra94771.6;Parent=Phyra94771;constitutive=1;ensembl_phase=1;rank=6 scaffold_23 . CDS 443475 443565 . - 0 ID=Phyra94771;Parent=Phyra94771;rank=5 scaffold_23 . CDS 443615 443802 . - 0 ID=Phyra94771;Parent=Phyra94771;rank=4 scaffold_23 . CDS 443883 444192 . - 0 ID=Phyra94771;Parent=Phyra94771;rank=3 scaffold_23 . CDS 444282 444473 . - 0 ID=Phyra94771;Parent=Phyra94771;rank=2 scaffold_23 . CDS 444580 444744 . - 0 ID=Phyra94771;Parent=Phyra94771;rank=1 scaffold_23 . biological_region 444511 444514 0.999 + . logic_name=eponine scaffold_23 . biological_region 444615 444618 0.999 + . logic_name=eponine scaffold_23 . biological_region 445190 445191 0.999 + . logic_name=eponine scaffold_23 . biological_region 446246 446249 0.999 - . logic_name=eponine scaffold_23 . biological_region 449167 449169 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 446065 448737 . + . ID=Phyra77311;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000123;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 446065 448737 . + . ID=Phyra77311;Parent=Phyra77311;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 446065 447213 . + 0 ID=Phyra77311;Parent=Phyra77311;rank=1 scaffold_23 . exon 446065 447213 . + . ID=Phyra77311.1;Parent=Phyra77311;constitutive=1;rank=1 scaffold_23 . CDS 447295 448206 . + 0 ID=Phyra77311;Parent=Phyra77311;rank=2 scaffold_23 . exon 447295 448206 . + . ID=Phyra77311.2;Parent=Phyra77311;constitutive=1;rank=2 scaffold_23 . CDS 448415 448561 . + 0 ID=Phyra77311;Parent=Phyra77311;rank=3 scaffold_23 . exon 448415 448561 . + . ID=Phyra77311.3;Parent=Phyra77311;constitutive=1;rank=3 scaffold_23 . CDS 448618 448737 . + 0 ID=Phyra77311;Parent=Phyra77311;rank=4 scaffold_23 . exon 448618 448737 . + . ID=Phyra77311.4;Parent=Phyra77311;constitutive=1;rank=4 scaffold_23 ensembl protein_coding_gene 448906 457838 . - . ID=Phyra77312;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000124;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 448906 457838 . - . ID=Phyra77312;Parent=Phyra77312;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 448906 451116 . - 0 ID=Phyra77312;Parent=Phyra77312;rank=10 scaffold_23 . exon 448906 451116 . - . ID=Phyra77312.10;Parent=Phyra77312;constitutive=1;rank=10 scaffold_23 . CDS 451196 451338 . - 0 ID=Phyra77312;Parent=Phyra77312;rank=9 scaffold_23 . exon 451196 451338 . - . ID=Phyra77312.9;Parent=Phyra77312;constitutive=1;ensembl_phase=1;rank=9 scaffold_23 . CDS 451486 451841 . - 0 ID=Phyra77312;Parent=Phyra77312;rank=8 scaffold_23 . exon 451486 451841 . - . ID=Phyra77312.8;Parent=Phyra77312;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_23 . CDS 451924 453774 . - 0 ID=Phyra77312;Parent=Phyra77312;rank=7 scaffold_23 . exon 451924 453774 . - . ID=Phyra77312.7;Parent=Phyra77312;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_23 . CDS 454111 454278 . - 0 ID=Phyra77312;Parent=Phyra77312;rank=6 scaffold_23 . CDS 454346 454413 . - 0 ID=Phyra77312;Parent=Phyra77312;rank=5 scaffold_23 . CDS 454661 455716 . - 0 ID=Phyra77312;Parent=Phyra77312;rank=4 scaffold_23 . CDS 455923 456024 . - 0 ID=Phyra77312;Parent=Phyra77312;rank=3 scaffold_23 . CDS 456284 456940 . - 0 ID=Phyra77312;Parent=Phyra77312;rank=2 scaffold_23 . CDS 457062 457838 . - 0 ID=Phyra77312;Parent=Phyra77312;rank=1 scaffold_23 . exon 443475 443565 . - . ID=Phyra94771.5;Parent=Phyra94771;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_23 . exon 443615 443802 . - . ID=Phyra94771.4;Parent=Phyra94771;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 . exon 443883 444192 . - . ID=Phyra94771.3;Parent=Phyra94771;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_23 . exon 444282 444473 . - . ID=Phyra94771.2;Parent=Phyra94771;constitutive=1;rank=2 scaffold_23 . exon 444580 444744 . - . ID=Phyra94771.1;Parent=Phyra94771;constitutive=1;rank=1 scaffold_23 . repeat_region 456965 457014 . ? . description=dust scaffold_23 . repeat_region 457628 457669 . ? . description=dust scaffold_23 . repeat_region 459165 459209 . ? . description=trf scaffold_23 . repeat_region 459174 459227 . ? . description=dust scaffold_23 . repeat_region 461284 461314 . ? . description=trf scaffold_23 . repeat_region 461440 461498 . ? . description=trf scaffold_23 ensembl protein_coding_gene 458288 458880 . + . ID=Phyra45019;biotype=protein_coding;external_name=gwEuk.23.52.1;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 458288 458880 . + . ID=Phyra45019;Parent=Phyra45019;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 458288 458479 . + 0 ID=Phyra45019;Parent=Phyra45019;rank=1 scaffold_23 . exon 458288 458479 . + . ID=Phyra45019.1;Parent=Phyra45019;constitutive=1;rank=1 scaffold_23 . CDS 458550 458738 . + 0 ID=Phyra45019;Parent=Phyra45019;rank=2 scaffold_23 . exon 458550 458738 . + . ID=Phyra45019.2;Parent=Phyra45019;constitutive=1;rank=2 scaffold_23 . CDS 458803 458880 . + 0 ID=Phyra45019;Parent=Phyra45019;rank=3 scaffold_23 . exon 458803 458880 . + . ID=Phyra45019.3;Parent=Phyra45019;constitutive=1;rank=3 scaffold_23 ensembl protein_coding_gene 459718 460299 . + . ID=Phyra71504;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_23000014;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 459718 460299 . + . ID=Phyra71504;Parent=Phyra71504;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 459718 460299 . + 0 ID=Phyra71504;Parent=Phyra71504;rank=1 scaffold_23 . exon 459718 460299 . + . ID=Phyra71504.1;Parent=Phyra71504;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 462040 462531 . + . ID=Phyra71505;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_23000015;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 462040 462531 . + . ID=Phyra71505;Parent=Phyra71505;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 462040 462055 . + 0 ID=Phyra71505;Parent=Phyra71505;rank=1 scaffold_23 . exon 462040 462055 . + . ID=Phyra71505.1;Parent=Phyra71505;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 462122 462531 . + 0 ID=Phyra71505;Parent=Phyra71505;rank=2 scaffold_23 . exon 462122 462531 . + . ID=Phyra71505.2;Parent=Phyra71505;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . exon 454111 454278 . - . ID=Phyra77312.6;Parent=Phyra77312;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_23 . exon 454346 454413 . - . ID=Phyra77312.5;Parent=Phyra77312;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_23 . exon 454661 455716 . - . ID=Phyra77312.4;Parent=Phyra77312;constitutive=1;rank=4 scaffold_23 . exon 455923 456024 . - . ID=Phyra77312.3;Parent=Phyra77312;constitutive=1;rank=3 scaffold_23 . exon 456284 456940 . - . ID=Phyra77312.2;Parent=Phyra77312;constitutive=1;rank=2 scaffold_23 . exon 457062 457838 . - . ID=Phyra77312.1;Parent=Phyra77312;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 460512 461820 . - . ID=Phyra77315;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000127;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 460512 461820 . - . ID=Phyra77315;Parent=Phyra77315;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 460512 461684 . - 0 ID=Phyra77315;Parent=Phyra77315;rank=2 scaffold_23 . exon 460512 461684 . - . ID=Phyra77315.2;Parent=Phyra77315;constitutive=1;rank=2 scaffold_23 . CDS 461746 461820 . - 0 ID=Phyra77315;Parent=Phyra77315;rank=1 scaffold_23 . exon 461746 461820 . - . ID=Phyra77315.1;Parent=Phyra77315;constitutive=1;rank=1 scaffold_23 . biological_region 463190 463193 0.999 + . logic_name=eponine scaffold_23 . biological_region 468784 468789 0.999 - . logic_name=eponine scaffold_23 . biological_region 468796 468802 0.999 + . logic_name=eponine scaffold_23 . biological_region 468838 468846 0.999 + . logic_name=eponine scaffold_23 . biological_region 468859 468864 0.999 + . logic_name=eponine scaffold_23 . biological_region 468865 468869 0.999 - . logic_name=eponine scaffold_23 . biological_region 471234 471237 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 469895 470914 . - . ID=Phyra71506;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_23000016;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 469895 470914 . - . ID=Phyra71506;Parent=Phyra71506;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 469895 470914 . - 0 ID=Phyra71506;Parent=Phyra71506;rank=1 scaffold_23 . exon 469895 470914 . - . ID=Phyra71506.1;Parent=Phyra71506;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 472228 473250 . - . ID=Phyra71507;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_23000017;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 472228 473250 . - . ID=Phyra71507;Parent=Phyra71507;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 472228 473250 . - 0 ID=Phyra71507;Parent=Phyra71507;rank=1 scaffold_23 . exon 472228 473250 . - . ID=Phyra71507.1;Parent=Phyra71507;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 462765 465053 . - . ID=Phyra77317;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000129;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 462765 465053 . - . ID=Phyra77317;Parent=Phyra77317;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 462765 465053 . - 0 ID=Phyra77317;Parent=Phyra77317;rank=1 scaffold_23 . exon 462765 465053 . - . ID=Phyra77317.1;Parent=Phyra77317;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 465281 469017 . - . ID=Phyra77318;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000130;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 465281 469017 . - . ID=Phyra77318;Parent=Phyra77318;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 465281 466346 . - 0 ID=Phyra77318;Parent=Phyra77318;rank=7 scaffold_23 . exon 465281 466346 . - . ID=Phyra77318.7;Parent=Phyra77318;constitutive=1;ensembl_phase=2;rank=7 scaffold_23 . CDS 466414 466673 . - 0 ID=Phyra77318;Parent=Phyra77318;rank=6 scaffold_23 . exon 466414 466673 . - . ID=Phyra77318.6;Parent=Phyra77318;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_23 . CDS 466744 466810 . - 0 ID=Phyra77318;Parent=Phyra77318;rank=5 scaffold_23 . exon 466744 466810 . - . ID=Phyra77318.5;Parent=Phyra77318;constitutive=1;ensembl_phase=2;rank=5 scaffold_23 . CDS 466874 466914 . - 0 ID=Phyra77318;Parent=Phyra77318;rank=4 scaffold_23 . exon 466874 466914 . - . ID=Phyra77318.4;Parent=Phyra77318;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_23 . CDS 467479 467640 . - 0 ID=Phyra77318;Parent=Phyra77318;rank=3 scaffold_23 . exon 467479 467640 . - . ID=Phyra77318.3;Parent=Phyra77318;constitutive=1;rank=3 scaffold_23 . CDS 467701 467757 . - 0 ID=Phyra77318;Parent=Phyra77318;rank=2 scaffold_23 . exon 467701 467757 . - . ID=Phyra77318.2;Parent=Phyra77318;constitutive=1;rank=2 scaffold_23 . CDS 467833 469017 . - 0 ID=Phyra77318;Parent=Phyra77318;rank=1 scaffold_23 . exon 467833 469017 . - . ID=Phyra77318.1;Parent=Phyra77318;constitutive=1;rank=1 scaffold_23 . repeat_region 473844 473907 . ? . description=trf scaffold_23 . repeat_region 476318 476357 . ? . description=trf scaffold_23 . repeat_region 476318 476357 . ? . description=dust scaffold_23 . repeat_region 476947 476967 . ? . description=trf scaffold_23 . repeat_region 476991 477031 . ? . description=dust scaffold_23 . repeat_region 477001 477031 . ? . description=trf scaffold_23 . repeat_region 478335 480813 . ? . description=dust scaffold_23 . repeat_region 480923 480944 . ? . description=trf scaffold_23 . repeat_region 480923 480944 . ? . description=dust scaffold_23 . repeat_region 481534 481554 . ? . description=trf scaffold_23 ensembl protein_coding_gene 477407 507394 . + . ID=Phyra45077;biotype=protein_coding;external_name=gwEuk.23.110.1;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 477407 507394 . + . ID=Phyra45077;Parent=Phyra45077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 477407 478249 . + 0 ID=Phyra45077;Parent=Phyra45077;rank=1 scaffold_23 . exon 477407 478249 . + . ID=Phyra45077.1;Parent=Phyra45077;constitutive=1;rank=1 scaffold_23 . CDS 507227 507394 . + 0 ID=Phyra45077;Parent=Phyra45077;rank=2 scaffold_23 ensembl protein_coding_gene 475067 476089 . + . ID=Phyra71508;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_23000018;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 475067 476089 . + . ID=Phyra71508;Parent=Phyra71508;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 475067 476089 . + 0 ID=Phyra71508;Parent=Phyra71508;rank=1 scaffold_23 . exon 475067 476089 . + . ID=Phyra71508.1;Parent=Phyra71508;constitutive=1;rank=1 scaffold_23 . repeat_region 493395 493409 . ? . description=dust scaffold_23 . repeat_region 495186 495195 . ? . description=dust scaffold_23 . repeat_region 496140 496160 . ? . description=trf scaffold_23 . repeat_region 499295 499307 . ? . description=dust scaffold_23 ensembl protein_coding_gene 477407 507394 . + . ID=Phyra45077;biotype=protein_coding;external_name=gwEuk.23.110.1;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 477407 507394 . + . ID=Phyra45077;Parent=Phyra45077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 477407 478249 . + 0 ID=Phyra45077;Parent=Phyra45077;rank=1 scaffold_23 . CDS 507227 507394 . + 0 ID=Phyra45077;Parent=Phyra45077;rank=2 scaffold_23 . biological_region 508532 508534 0.999 + . logic_name=eponine scaffold_23 . biological_region 508575 508577 0.999 - . logic_name=eponine scaffold_23 . biological_region 508761 508762 0.999 - . logic_name=eponine scaffold_23 . biological_region 509227 509231 0.999 - . logic_name=eponine scaffold_23 . biological_region 509433 509438 0.999 + . logic_name=eponine scaffold_23 . biological_region 509449 509456 0.999 - . logic_name=eponine scaffold_23 . biological_region 509458 509465 0.999 + . logic_name=eponine scaffold_23 . exon 507227 507394 . + . ID=Phyra45077.2;Parent=Phyra45077;constitutive=1;rank=2 scaffold_23 ensembl protein_coding_gene 508558 509853 . - . ID=Phyra77326;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000138;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 508558 509853 . - . ID=Phyra77326;Parent=Phyra77326;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 508558 509853 . - 0 ID=Phyra77326;Parent=Phyra77326;rank=1 scaffold_23 . exon 508558 509853 . - . ID=Phyra77326.1;Parent=Phyra77326;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 511561 514044 . - . ID=Phyra77327;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000139;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 511561 514044 . - . ID=Phyra77327;Parent=Phyra77327;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 511561 514044 . - 0 ID=Phyra77327;Parent=Phyra77327;rank=1 scaffold_23 . exon 511561 514044 . - . ID=Phyra77327.1;Parent=Phyra77327;constitutive=1;rank=1 scaffold_23 . repeat_region 514121 514170 . ? . description=dust scaffold_23 . repeat_region 514452 514473 . ? . description=trf scaffold_23 . repeat_region 516756 519853 . ? . description=dust scaffold_23 . repeat_region 521681 521698 . ? . description=dust scaffold_23 ensembl protein_coding_gene 515013 516452 . - . ID=Phyra77328;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000140;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 515013 516452 . - . ID=Phyra77328;Parent=Phyra77328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 515013 516452 . - 0 ID=Phyra77328;Parent=Phyra77328;rank=1 scaffold_23 . exon 515013 516452 . - . ID=Phyra77328.1;Parent=Phyra77328;constitutive=1;rank=1 scaffold_23 . biological_region 530532 530536 0.999 - . logic_name=eponine scaffold_23 ensembl protein_coding_gene 522082 525912 . + . ID=Phyra77329;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000141;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 522082 525912 . + . ID=Phyra77329;Parent=Phyra77329;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 522082 525912 . + 0 ID=Phyra77329;Parent=Phyra77329;rank=1 scaffold_23 . exon 522082 525912 . + . ID=Phyra77329.1;Parent=Phyra77329;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 527620 528090 . + . ID=Phyra77330;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000142;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 527620 528090 . + . ID=Phyra77330;Parent=Phyra77330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 527620 528090 . + 0 ID=Phyra77330;Parent=Phyra77330;rank=1 scaffold_23 . exon 527620 528090 . + . ID=Phyra77330.1;Parent=Phyra77330;constitutive=1;rank=1 scaffold_23 . repeat_region 531784 531799 . ? . description=dust scaffold_23 . repeat_region 533847 533884 . ? . description=dust scaffold_23 . repeat_region 537299 537317 . ? . description=dust scaffold_23 . repeat_region 539485 539492 . ? . description=dust scaffold_23 . repeat_region 541050 560629 . ? . description=dust scaffold_23 ensembl protein_coding_gene 534714 536204 . + . ID=Phyra77331;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_23000143;logic_name=jgi_phyra1 scaffold_23 ensembl transcript 534714 536204 . + . ID=Phyra77331;Parent=Phyra77331;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_23 . CDS 534714 534993 . + 0 ID=Phyra77331;Parent=Phyra77331;rank=1 scaffold_23 . exon 534714 534993 . + . ID=Phyra77331.1;Parent=Phyra77331;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 535053 535890 . + 0 ID=Phyra77331;Parent=Phyra77331;rank=2 scaffold_23 . exon 535053 535890 . + . ID=Phyra77331.2;Parent=Phyra77331;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_23 . CDS 536093 536204 . + 0 ID=Phyra77331;Parent=Phyra77331;rank=3 scaffold_23 . exon 536093 536204 . + . ID=Phyra77331.3;Parent=Phyra77331;constitutive=1;ensembl_phase=2;rank=3 scaffold_23 . repeat_region 541050 560629 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_21 1 583437 scaffold_21 . repeat_region 6913 6962 . ? . description=dust scaffold_21 . biological_region 9804 9810 0.999 + . logic_name=eponine scaffold_21 ensembl protein_coding_gene 1035 1739 . - . ID=Phyra76860;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000001;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 1035 1739 . - . ID=Phyra76860;Parent=Phyra76860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 1035 1739 . - 0 ID=Phyra76860;Parent=Phyra76860;rank=1 scaffold_21 . exon 1035 1739 . - . ID=Phyra76860.1;Parent=Phyra76860;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 5933 6631 . - . ID=Phyra76861;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000002;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 5933 6631 . - . ID=Phyra76861;Parent=Phyra76861;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 5933 6631 . - 0 ID=Phyra76861;Parent=Phyra76861;rank=1 scaffold_21 . exon 5933 6631 . - . ID=Phyra76861.1;Parent=Phyra76861;constitutive=1;rank=1 scaffold_21 . repeat_region 17980 18000 . ? . description=trf scaffold_21 ensembl protein_coding_gene 10478 11000 . - . ID=Phyra76862;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000003;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 10478 11000 . - . ID=Phyra76862;Parent=Phyra76862;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 10478 10881 . - 0 ID=Phyra76862;Parent=Phyra76862;rank=2 scaffold_21 . exon 10478 10881 . - . ID=Phyra76862.2;Parent=Phyra76862;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 10946 11000 . - 0 ID=Phyra76862;Parent=Phyra76862;rank=1 scaffold_21 . exon 10946 11000 . - . ID=Phyra76862.1;Parent=Phyra76862;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 13035 13727 . + . ID=Phyra76863;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000004;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 13035 13727 . + . ID=Phyra76863;Parent=Phyra76863;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 13035 13727 . + 0 ID=Phyra76863;Parent=Phyra76863;rank=1 scaffold_21 . exon 13035 13727 . + . ID=Phyra76863.1;Parent=Phyra76863;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 17363 18093 . - . ID=Phyra76864;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000005;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 17363 18093 . - . ID=Phyra76864;Parent=Phyra76864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 17363 17369 . - 0 ID=Phyra76864;Parent=Phyra76864;rank=4 scaffold_21 . exon 17363 17369 . - . ID=Phyra76864.4;Parent=Phyra76864;constitutive=1;ensembl_phase=2;rank=4 scaffold_21 . CDS 17407 17504 . - 0 ID=Phyra76864;Parent=Phyra76864;rank=3 scaffold_21 . exon 17407 17504 . - . ID=Phyra76864.3;Parent=Phyra76864;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_21 . CDS 17542 17697 . - 0 ID=Phyra76864;Parent=Phyra76864;rank=2 scaffold_21 . exon 17542 17697 . - . ID=Phyra76864.2;Parent=Phyra76864;constitutive=1;rank=2 scaffold_21 . CDS 17761 18093 . - 0 ID=Phyra76864;Parent=Phyra76864;rank=1 scaffold_21 . exon 17761 18093 . - . ID=Phyra76864.1;Parent=Phyra76864;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 18307 19519 . + . ID=Phyra76865;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000006;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 18307 19519 . + . ID=Phyra76865;Parent=Phyra76865;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 18307 18409 . + 0 ID=Phyra76865;Parent=Phyra76865;rank=1 scaffold_21 . exon 18307 18409 . + . ID=Phyra76865.1;Parent=Phyra76865;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 18465 19519 . + 0 ID=Phyra76865;Parent=Phyra76865;rank=2 scaffold_21 . exon 18465 19519 . + . ID=Phyra76865.2;Parent=Phyra76865;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . biological_region 24180 24182 0.999 - . logic_name=eponine scaffold_21 . repeat_region 26720 46878 . ? . description=dust scaffold_21 ensembl protein_coding_gene 19884 21425 . + . ID=Phyra76866;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000007;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 19884 21425 . + . ID=Phyra76866;Parent=Phyra76866;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 19884 21425 . + 0 ID=Phyra76866;Parent=Phyra76866;rank=1 scaffold_21 . exon 19884 21425 . + . ID=Phyra76866.1;Parent=Phyra76866;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 21507 23610 . - . ID=Phyra76867;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000008;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 21507 23610 . - . ID=Phyra76867;Parent=Phyra76867;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 21507 22460 . - 0 ID=Phyra76867;Parent=Phyra76867;rank=5 scaffold_21 . exon 21507 22460 . - . ID=Phyra76867.5;Parent=Phyra76867;constitutive=1;rank=5 scaffold_21 . CDS 22544 22645 . - 0 ID=Phyra76867;Parent=Phyra76867;rank=4 scaffold_21 . exon 22544 22645 . - . ID=Phyra76867.4;Parent=Phyra76867;constitutive=1;rank=4 scaffold_21 . CDS 22735 22906 . - 0 ID=Phyra76867;Parent=Phyra76867;rank=3 scaffold_21 . exon 22735 22906 . - . ID=Phyra76867.3;Parent=Phyra76867;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . CDS 23021 23383 . - 0 ID=Phyra76867;Parent=Phyra76867;rank=2 scaffold_21 . exon 23021 23383 . - . ID=Phyra76867.2;Parent=Phyra76867;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_21 . CDS 23453 23610 . - 0 ID=Phyra76867;Parent=Phyra76867;rank=1 scaffold_21 . exon 23453 23610 . - . ID=Phyra76867.1;Parent=Phyra76867;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 24162 26218 . - . ID=Phyra76868;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000009;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 24162 26218 . - . ID=Phyra76868;Parent=Phyra76868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 24162 25115 . - 0 ID=Phyra76868;Parent=Phyra76868;rank=5 scaffold_21 . exon 24162 25115 . - . ID=Phyra76868.5;Parent=Phyra76868;constitutive=1;rank=5 scaffold_21 . CDS 25195 25296 . - 0 ID=Phyra76868;Parent=Phyra76868;rank=4 scaffold_21 . exon 25195 25296 . - . ID=Phyra76868.4;Parent=Phyra76868;constitutive=1;rank=4 scaffold_21 . CDS 25367 25545 . - 0 ID=Phyra76868;Parent=Phyra76868;rank=3 scaffold_21 . exon 25367 25545 . - . ID=Phyra76868.3;Parent=Phyra76868;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 25618 26006 . - 0 ID=Phyra76868;Parent=Phyra76868;rank=2 scaffold_21 . exon 25618 26006 . - . ID=Phyra76868.2;Parent=Phyra76868;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 26079 26218 . - 0 ID=Phyra76868;Parent=Phyra76868;rank=1 scaffold_21 . exon 26079 26218 . - . ID=Phyra76868.1;Parent=Phyra76868;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . repeat_region 26720 46878 . ? . description=dust scaffold_21 ensembl protein_coding_gene 48144 51395 . - . ID=Phyra76869;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000010;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 48144 51395 . - . ID=Phyra76869;Parent=Phyra76869;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 48144 51395 . - 0 ID=Phyra76869;Parent=Phyra76869;rank=1 scaffold_21 . exon 48144 51395 . - . ID=Phyra76869.1;Parent=Phyra76869;constitutive=1;rank=1 scaffold_21 . biological_region 50990 50992 0.999 + . logic_name=eponine scaffold_21 . biological_region 51034 51038 0.999 + . logic_name=eponine scaffold_21 . biological_region 51035 51039 0.999 - . logic_name=eponine scaffold_21 . biological_region 51090 51091 0.999 - . logic_name=eponine scaffold_21 . biological_region 52265 52269 0.999 - . logic_name=eponine scaffold_21 . biological_region 52767 52767 0.999 + . logic_name=eponine scaffold_21 . biological_region 52985 52990 0.999 - . logic_name=eponine scaffold_21 . biological_region 52996 52998 0.999 + . logic_name=eponine scaffold_21 . biological_region 53025 53025 0.999 + . logic_name=eponine scaffold_21 . biological_region 53042 53047 0.999 + . logic_name=eponine scaffold_21 . repeat_region 53068 53089 . ? . description=trf scaffold_21 . biological_region 53803 53806 0.999 + . logic_name=eponine scaffold_21 . biological_region 53922 53925 0.999 + . logic_name=eponine scaffold_21 . biological_region 56469 56470 0.999 + . logic_name=eponine scaffold_21 . biological_region 56613 56617 0.999 + . logic_name=eponine scaffold_21 . biological_region 56667 56670 0.999 + . logic_name=eponine scaffold_21 . biological_region 59274 59274 0.999 + . logic_name=eponine scaffold_21 ensembl protein_coding_gene 51792 53019 . + . ID=Phyra71460;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_21000001;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 51792 53019 . + . ID=Phyra71460;Parent=Phyra71460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 51792 51814 . + 0 ID=Phyra71460;Parent=Phyra71460;rank=1 scaffold_21 . exon 51792 51814 . + . ID=Phyra71460.1;Parent=Phyra71460;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 51858 53019 . + 0 ID=Phyra71460;Parent=Phyra71460;rank=2 scaffold_21 . exon 51858 53019 . + . ID=Phyra71460.2;Parent=Phyra71460;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 ensembl protein_coding_gene 53687 54937 . + . ID=Phyra76871;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000012;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 53687 54937 . + . ID=Phyra76871;Parent=Phyra76871;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 53687 54937 . + 0 ID=Phyra76871;Parent=Phyra76871;rank=1 scaffold_21 . exon 53687 54937 . + . ID=Phyra76871.1;Parent=Phyra76871;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 55168 56808 . - . ID=Phyra76872;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000013;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 55168 56808 . - . ID=Phyra76872;Parent=Phyra76872;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 55168 56808 . - 0 ID=Phyra76872;Parent=Phyra76872;rank=1 scaffold_21 . exon 55168 56808 . - . ID=Phyra76872.1;Parent=Phyra76872;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 57091 57740 . + . ID=Phyra76873;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000014;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 57091 57740 . + . ID=Phyra76873;Parent=Phyra76873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 57091 57225 . + 0 ID=Phyra76873;Parent=Phyra76873;rank=1 scaffold_21 . exon 57091 57225 . + . ID=Phyra76873.1;Parent=Phyra76873;constitutive=1;rank=1 scaffold_21 . CDS 57318 57740 . + 0 ID=Phyra76873;Parent=Phyra76873;rank=2 scaffold_21 . exon 57318 57740 . + . ID=Phyra76873.2;Parent=Phyra76873;constitutive=1;rank=2 scaffold_21 ensembl protein_coding_gene 58929 61710 . + . ID=Phyra76874;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000015;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 58929 61710 . + . ID=Phyra76874;Parent=Phyra76874;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 58929 58935 . + 0 ID=Phyra76874;Parent=Phyra76874;rank=1 scaffold_21 . exon 58929 58935 . + . ID=Phyra76874.1;Parent=Phyra76874;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 59230 59258 . + 0 ID=Phyra76874;Parent=Phyra76874;rank=2 scaffold_21 . exon 59230 59258 . + . ID=Phyra76874.2;Parent=Phyra76874;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 59594 59665 . + 0 ID=Phyra76874;Parent=Phyra76874;rank=3 scaffold_21 . CDS 59737 59887 . + 0 ID=Phyra76874;Parent=Phyra76874;rank=4 scaffold_21 . CDS 60211 60367 . + 0 ID=Phyra76874;Parent=Phyra76874;rank=5 scaffold_21 . CDS 60457 60634 . + 0 ID=Phyra76874;Parent=Phyra76874;rank=6 scaffold_21 . CDS 60703 60981 . + 0 ID=Phyra76874;Parent=Phyra76874;rank=7 scaffold_21 . CDS 61054 61710 . + 0 ID=Phyra76874;Parent=Phyra76874;rank=8 scaffold_21 . repeat_region 65027 65084 . ? . description=dust scaffold_21 . repeat_region 68105 68112 . ? . description=dust scaffold_21 ensembl protein_coding_gene 67126 67752 . - . ID=Phyra71461;biotype=protein_coding;description=Ribosomal protein L10 [Source:UniProtKB/TrEMBL%3BAcc:A7XKI1];external_name=fgenesh1_pm.C_scaffold_21000002;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 67126 67752 . - . ID=Phyra71461;Parent=Phyra71461;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 67126 67752 . - 0 ID=Phyra71461;Parent=Phyra71461;rank=1 scaffold_21 . exon 67126 67752 . - . ID=Phyra71461.1;Parent=Phyra71461;constitutive=1;rank=1 scaffold_21 . exon 59594 59665 . + . ID=Phyra76874.3;Parent=Phyra76874;constitutive=1;rank=3 scaffold_21 . exon 59737 59887 . + . ID=Phyra76874.4;Parent=Phyra76874;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_21 . exon 60211 60367 . + . ID=Phyra76874.5;Parent=Phyra76874;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_21 . exon 60457 60634 . + . ID=Phyra76874.6;Parent=Phyra76874;constitutive=1;ensembl_phase=2;rank=6 scaffold_21 . exon 60703 60981 . + . ID=Phyra76874.7;Parent=Phyra76874;constitutive=1;rank=7 scaffold_21 . exon 61054 61710 . + . ID=Phyra76874.8;Parent=Phyra76874;constitutive=1;rank=8 scaffold_21 ensembl protein_coding_gene 61993 63028 . + . ID=Phyra76875;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000016;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 61993 63028 . + . ID=Phyra76875;Parent=Phyra76875;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 61993 62172 . + 0 ID=Phyra76875;Parent=Phyra76875;rank=1 scaffold_21 . exon 61993 62172 . + . ID=Phyra76875.1;Parent=Phyra76875;constitutive=1;rank=1 scaffold_21 . CDS 62243 62300 . + 0 ID=Phyra76875;Parent=Phyra76875;rank=2 scaffold_21 . exon 62243 62300 . + . ID=Phyra76875.2;Parent=Phyra76875;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_21 . CDS 62363 62653 . + 0 ID=Phyra76875;Parent=Phyra76875;rank=3 scaffold_21 . exon 62363 62653 . + . ID=Phyra76875.3;Parent=Phyra76875;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 62721 63028 . + 0 ID=Phyra76875;Parent=Phyra76875;rank=4 scaffold_21 . exon 62721 63028 . + . ID=Phyra76875.4;Parent=Phyra76875;constitutive=1;ensembl_phase=1;rank=4 scaffold_21 ensembl protein_coding_gene 63201 65107 . - . ID=Phyra76876;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000017;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 63201 65107 . - . ID=Phyra76876;Parent=Phyra76876;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 63201 63538 . - 0 ID=Phyra76876;Parent=Phyra76876;rank=6 scaffold_21 . exon 63201 63538 . - . ID=Phyra76876.6;Parent=Phyra76876;constitutive=1;ensembl_phase=1;rank=6 scaffold_21 . CDS 63566 63806 . - 0 ID=Phyra76876;Parent=Phyra76876;rank=5 scaffold_21 . exon 63566 63806 . - . ID=Phyra76876.5;Parent=Phyra76876;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_21 . CDS 63870 63931 . - 0 ID=Phyra76876;Parent=Phyra76876;rank=4 scaffold_21 . exon 63870 63931 . - . ID=Phyra76876.4;Parent=Phyra76876;constitutive=1;ensembl_phase=1;rank=4 scaffold_21 . CDS 63999 64315 . - 0 ID=Phyra76876;Parent=Phyra76876;rank=3 scaffold_21 . exon 63999 64315 . - . ID=Phyra76876.3;Parent=Phyra76876;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_21 . CDS 64384 64843 . - 0 ID=Phyra76876;Parent=Phyra76876;rank=2 scaffold_21 . exon 64384 64843 . - . ID=Phyra76876.2;Parent=Phyra76876;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_21 . CDS 64900 65107 . - 0 ID=Phyra76876;Parent=Phyra76876;rank=1 scaffold_21 . exon 64900 65107 . - . ID=Phyra76876.1;Parent=Phyra76876;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 65245 66957 . + . ID=Phyra76877;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000018;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 65245 66957 . + . ID=Phyra76877;Parent=Phyra76877;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 65245 65854 . + 0 ID=Phyra76877;Parent=Phyra76877;rank=1 scaffold_21 . exon 65245 65854 . + . ID=Phyra76877.1;Parent=Phyra76877;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 65930 66134 . + 0 ID=Phyra76877;Parent=Phyra76877;rank=2 scaffold_21 . exon 65930 66134 . + . ID=Phyra76877.2;Parent=Phyra76877;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_21 . CDS 66204 66957 . + 0 ID=Phyra76877;Parent=Phyra76877;rank=3 scaffold_21 . exon 66204 66957 . + . ID=Phyra76877.3;Parent=Phyra76877;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . repeat_region 69565 79174 . ? . description=dust scaffold_21 . repeat_region 84600 84611 . ? . description=dust scaffold_21 . biological_region 84630 84637 0.999 + . logic_name=eponine scaffold_21 . biological_region 84779 84783 0.999 - . logic_name=eponine scaffold_21 . biological_region 84837 84837 0.999 + . logic_name=eponine scaffold_21 . biological_region 85043 85045 0.999 + . logic_name=eponine scaffold_21 . biological_region 85183 85187 0.999 + . logic_name=eponine scaffold_21 . biological_region 85203 85205 0.999 + . logic_name=eponine scaffold_21 . repeat_region 85381 85508 . ? . description=trf scaffold_21 . repeat_region 87178 87280 . ? . description=trf scaffold_21 . repeat_region 87178 87280 . ? . description=trf scaffold_21 . repeat_region 87402 87430 . ? . description=trf scaffold_21 . biological_region 88578 88580 0.999 - . logic_name=eponine scaffold_21 . biological_region 88931 88934 0.999 + . logic_name=eponine scaffold_21 . biological_region 88983 88988 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 79395 80357 . - . ID=Phyra76879;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000020;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 79395 80357 . - . ID=Phyra76879;Parent=Phyra76879;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 79395 80357 . - 0 ID=Phyra76879;Parent=Phyra76879;rank=1 scaffold_21 . exon 79395 80357 . - . ID=Phyra76879.1;Parent=Phyra76879;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 84868 86238 . + . ID=Phyra76880;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000021;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 84868 86238 . + . ID=Phyra76880;Parent=Phyra76880;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 84868 86238 . + 0 ID=Phyra76880;Parent=Phyra76880;rank=1 scaffold_21 . exon 84868 86238 . + . ID=Phyra76880.1;Parent=Phyra76880;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 86972 87676 . + . ID=Phyra76881;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000022;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 86972 87676 . + . ID=Phyra76881;Parent=Phyra76881;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 86972 87676 . + 0 ID=Phyra76881;Parent=Phyra76881;rank=1 scaffold_21 . exon 86972 87676 . + . ID=Phyra76881.1;Parent=Phyra76881;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 88074 89081 . + . ID=Phyra76882;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000023;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 88074 89081 . + . ID=Phyra76882;Parent=Phyra76882;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 88074 88342 . + 0 ID=Phyra76882;Parent=Phyra76882;rank=1 scaffold_21 . exon 88074 88342 . + . ID=Phyra76882.1;Parent=Phyra76882;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 88427 89081 . + 0 ID=Phyra76882;Parent=Phyra76882;rank=2 scaffold_21 . exon 88427 89081 . + . ID=Phyra76882.2;Parent=Phyra76882;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 ensembl protein_coding_gene 89451 90296 . + . ID=Phyra94640;biotype=protein_coding;external_name=C_scaffold_21000001;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 89451 90296 . + . ID=Phyra94640;Parent=Phyra94640;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 89451 90296 . + 0 ID=Phyra94640;Parent=Phyra94640;rank=1 scaffold_21 . exon 89451 90296 . + . ID=Phyra94640.1;Parent=Phyra94640;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 90589 91428 . - . ID=Phyra94641;biotype=protein_coding;external_name=C_scaffold_21000002;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 90589 91428 . - . ID=Phyra94641;Parent=Phyra94641;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 90589 91428 . - 0 ID=Phyra94641;Parent=Phyra94641;rank=1 scaffold_21 . exon 90589 91428 . - . ID=Phyra94641.1;Parent=Phyra94641;constitutive=1;rank=1 scaffold_21 . repeat_region 91665 117048 . ? . description=dust scaffold_21 . repeat_region 117279 117471 . + . description=(CAG)n scaffold_21 . repeat_region 117283 117342 . ? . description=trf scaffold_21 . repeat_region 117295 117353 . ? . description=trf scaffold_21 . repeat_region 117307 117358 . ? . description=trf scaffold_21 . biological_region 117997 118001 0.999 + . logic_name=eponine scaffold_21 ensembl protein_coding_gene 117088 117639 . + . ID=Phyra94642;biotype=protein_coding;external_name=C_scaffold_21000003;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 117088 117639 . + . ID=Phyra94642;Parent=Phyra94642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 117088 117639 . + 0 ID=Phyra94642;Parent=Phyra94642;rank=1 scaffold_21 . exon 117088 117639 . + . ID=Phyra94642.1;Parent=Phyra94642;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 117764 118425 . - . ID=Phyra94643;biotype=protein_coding;external_name=C_scaffold_21000004;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 117764 118425 . - . ID=Phyra94643;Parent=Phyra94643;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 117764 118036 . - 0 ID=Phyra94643;Parent=Phyra94643;rank=2 scaffold_21 . exon 117764 118036 . - . ID=Phyra94643.2;Parent=Phyra94643;constitutive=1;rank=2 scaffold_21 . CDS 118090 118425 . - 0 ID=Phyra94643;Parent=Phyra94643;rank=1 scaffold_21 . exon 118090 118425 . - . ID=Phyra94643.1;Parent=Phyra94643;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 123757 124786 . - . ID=Phyra76887;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000028;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 123757 124786 . - . ID=Phyra76887;Parent=Phyra76887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 123757 124406 . - 0 ID=Phyra76887;Parent=Phyra76887;rank=2 scaffold_21 . exon 123757 124406 . - . ID=Phyra76887.2;Parent=Phyra76887;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 124471 124786 . - 0 ID=Phyra76887;Parent=Phyra76887;rank=1 scaffold_21 . exon 124471 124786 . - . ID=Phyra76887.1;Parent=Phyra76887;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 126217 128190 . + . ID=Phyra76889;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000030;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 126217 128190 . + . ID=Phyra76889;Parent=Phyra76889;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 126217 128190 . + 0 ID=Phyra76889;Parent=Phyra76889;rank=1 scaffold_21 . exon 126217 128190 . + . ID=Phyra76889.1;Parent=Phyra76889;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 128278 131388 . + . ID=Phyra76890;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000031;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 128278 131388 . + . ID=Phyra76890;Parent=Phyra76890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 128278 128570 . + 0 ID=Phyra76890;Parent=Phyra76890;rank=1 scaffold_21 . exon 128278 128570 . + . ID=Phyra76890.1;Parent=Phyra76890;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 128656 128895 . + 0 ID=Phyra76890;Parent=Phyra76890;rank=2 scaffold_21 . CDS 128972 129125 . + 0 ID=Phyra76890;Parent=Phyra76890;rank=3 scaffold_21 . CDS 129195 129258 . + 0 ID=Phyra76890;Parent=Phyra76890;rank=4 scaffold_21 . CDS 129317 129759 . + 0 ID=Phyra76890;Parent=Phyra76890;rank=5 scaffold_21 . CDS 130120 131388 . + 0 ID=Phyra76890;Parent=Phyra76890;rank=6 scaffold_21 ensembl protein_coding_gene 125149 125481 . - . ID=Phyra94645;biotype=protein_coding;external_name=C_scaffold_21000006;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 125149 125481 . - . ID=Phyra94645;Parent=Phyra94645;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 125149 125481 . - 0 ID=Phyra94645;Parent=Phyra94645;rank=1 scaffold_21 . exon 125149 125481 . - . ID=Phyra94645.1;Parent=Phyra94645;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 125647 125922 . + . ID=Phyra94646;biotype=protein_coding;external_name=C_scaffold_21000007;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 125647 125922 . + . ID=Phyra94646;Parent=Phyra94646;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 125647 125714 . + 0 ID=Phyra94646;Parent=Phyra94646;rank=1 scaffold_21 . exon 125647 125714 . + . ID=Phyra94646.1;Parent=Phyra94646;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 125736 125922 . + 0 ID=Phyra94646;Parent=Phyra94646;rank=2 scaffold_21 . exon 125736 125922 . + . ID=Phyra94646.2;Parent=Phyra94646;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . repeat_region 128588 128633 . ? . description=trf scaffold_21 . repeat_region 129980 129987 . ? . description=dust scaffold_21 . biological_region 131118 131120 0.999 - . logic_name=eponine scaffold_21 . biological_region 132085 132089 0.999 + . logic_name=eponine scaffold_21 . biological_region 133762 133765 0.999 + . logic_name=eponine scaffold_21 . repeat_region 137713 137782 . ? . description=trf scaffold_21 . biological_region 138386 138387 0.999 + . logic_name=eponine scaffold_21 ensembl protein_coding_gene 131918 133082 . - . ID=Phyra71462;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_21000003;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 131918 133082 . - . ID=Phyra71462;Parent=Phyra71462;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 131918 132540 . - 0 ID=Phyra71462;Parent=Phyra71462;rank=2 scaffold_21 . exon 131918 132540 . - . ID=Phyra71462.2;Parent=Phyra71462;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 132626 133082 . - 0 ID=Phyra71462;Parent=Phyra71462;rank=1 scaffold_21 . exon 132626 133082 . - . ID=Phyra71462.1;Parent=Phyra71462;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 134648 135841 . + . ID=Phyra71463;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_21000004;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 134648 135841 . + . ID=Phyra71463;Parent=Phyra71463;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 134648 135841 . + 0 ID=Phyra71463;Parent=Phyra71463;rank=1 scaffold_21 . exon 134648 135841 . + . ID=Phyra71463.1;Parent=Phyra71463;constitutive=1;rank=1 scaffold_21 . exon 128656 128895 . + . ID=Phyra76890.2;Parent=Phyra76890;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_21 . exon 128972 129125 . + . ID=Phyra76890.3;Parent=Phyra76890;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . exon 129195 129258 . + . ID=Phyra76890.4;Parent=Phyra76890;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_21 . exon 129317 129759 . + . ID=Phyra76890.5;Parent=Phyra76890;constitutive=1;ensembl_phase=1;rank=5 scaffold_21 . exon 130120 131388 . + . ID=Phyra76890.6;Parent=Phyra76890;constitutive=1;rank=6 scaffold_21 ensembl protein_coding_gene 133455 134111 . - . ID=Phyra76892;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000033;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 133455 134111 . - . ID=Phyra76892;Parent=Phyra76892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 133455 134111 . - 0 ID=Phyra76892;Parent=Phyra76892;rank=1 scaffold_21 . exon 133455 134111 . - . ID=Phyra76892.1;Parent=Phyra76892;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 137374 138426 . + . ID=Phyra76894;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000035;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 137374 138426 . + . ID=Phyra76894;Parent=Phyra76894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 137374 138426 . + 0 ID=Phyra76894;Parent=Phyra76894;rank=1 scaffold_21 . exon 137374 138426 . + . ID=Phyra76894.1;Parent=Phyra76894;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 138885 140255 . - . ID=Phyra44546;biotype=protein_coding;external_name=gwEuk.21.209.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 138885 140255 . - . ID=Phyra44546;Parent=Phyra44546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 138885 140255 . - 0 ID=Phyra44546;Parent=Phyra44546;rank=1 scaffold_21 . exon 138885 140255 . - . ID=Phyra44546.1;Parent=Phyra44546;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 140833 144877 . + . ID=Phyra76896;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000037;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 140833 144877 . + . ID=Phyra76896;Parent=Phyra76896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 140833 141273 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=1 scaffold_21 . exon 140833 141273 . + . ID=Phyra76896.1;Parent=Phyra76896;constitutive=1;rank=1 scaffold_21 . CDS 141361 141848 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=2 scaffold_21 . exon 141361 141848 . + . ID=Phyra76896.2;Parent=Phyra76896;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_21 . CDS 141908 141976 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=3 scaffold_21 . exon 141908 141976 . + . ID=Phyra76896.3;Parent=Phyra76896;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_21 . CDS 142043 142091 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=4 scaffold_21 . exon 142043 142091 . + . ID=Phyra76896.4;Parent=Phyra76896;constitutive=1;ensembl_phase=2;rank=4 scaffold_21 . CDS 142163 142354 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=5 scaffold_21 . exon 142163 142354 . + . ID=Phyra76896.5;Parent=Phyra76896;constitutive=1;rank=5 scaffold_21 . CDS 142419 142627 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=6 scaffold_21 . exon 142419 142627 . + . ID=Phyra76896.6;Parent=Phyra76896;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_21 . CDS 142837 142929 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=7 scaffold_21 . exon 142837 142929 . + . ID=Phyra76896.7;Parent=Phyra76896;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_21 . CDS 143001 143238 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=8 scaffold_21 . exon 143001 143238 . + . ID=Phyra76896.8;Parent=Phyra76896;constitutive=1;ensembl_phase=2;rank=8 scaffold_21 . CDS 143388 143475 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=9 scaffold_21 . exon 143388 143475 . + . ID=Phyra76896.9;Parent=Phyra76896;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_21 . CDS 143545 143594 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=10 scaffold_21 . exon 143545 143594 . + . ID=Phyra76896.10;Parent=Phyra76896;constitutive=1;ensembl_phase=1;rank=10 scaffold_21 . CDS 143783 143815 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=11 scaffold_21 . exon 143783 143815 . + . ID=Phyra76896.11;Parent=Phyra76896;constitutive=1;rank=11 scaffold_21 . CDS 143989 144027 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=12 scaffold_21 . exon 143989 144027 . + . ID=Phyra76896.12;Parent=Phyra76896;constitutive=1;rank=12 scaffold_21 . CDS 144092 144129 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=13 scaffold_21 . exon 144092 144129 . + . ID=Phyra76896.13;Parent=Phyra76896;constitutive=1;ensembl_end_phase=2;rank=13 scaffold_21 . CDS 144180 144237 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=14 scaffold_21 . exon 144180 144237 . + . ID=Phyra76896.14;Parent=Phyra76896;constitutive=1;ensembl_phase=2;rank=14 scaffold_21 . CDS 144302 144378 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=15 scaffold_21 . exon 144302 144378 . + . ID=Phyra76896.15;Parent=Phyra76896;constitutive=1;ensembl_end_phase=2;rank=15 scaffold_21 . CDS 144447 144513 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=16 scaffold_21 . exon 144447 144513 . + . ID=Phyra76896.16;Parent=Phyra76896;constitutive=1;ensembl_phase=2;rank=16 scaffold_21 . CDS 144579 144666 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=17 scaffold_21 . exon 144579 144666 . + . ID=Phyra76896.17;Parent=Phyra76896;constitutive=1;ensembl_end_phase=1;rank=17 scaffold_21 . CDS 144728 144768 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=18 scaffold_21 . exon 144728 144768 . + . ID=Phyra76896.18;Parent=Phyra76896;constitutive=1;ensembl_phase=1;rank=18 scaffold_21 . CDS 144839 144877 . + 0 ID=Phyra76896;Parent=Phyra76896;rank=19 scaffold_21 . exon 144839 144877 . + . ID=Phyra76896.19;Parent=Phyra76896;constitutive=1;rank=19 scaffold_21 ensembl protein_coding_gene 145126 146606 . - . ID=Phyra76897;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000038;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 145126 146606 . - . ID=Phyra76897;Parent=Phyra76897;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 145126 146072 . - 0 ID=Phyra76897;Parent=Phyra76897;rank=4 scaffold_21 . exon 145126 146072 . - . ID=Phyra76897.4;Parent=Phyra76897;constitutive=1;ensembl_phase=1;rank=4 scaffold_21 . CDS 146153 146275 . - 0 ID=Phyra76897;Parent=Phyra76897;rank=3 scaffold_21 . exon 146153 146275 . - . ID=Phyra76897.3;Parent=Phyra76897;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 146346 146426 . - 0 ID=Phyra76897;Parent=Phyra76897;rank=2 scaffold_21 . exon 146346 146426 . - . ID=Phyra76897.2;Parent=Phyra76897;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 146498 146606 . - 0 ID=Phyra76897;Parent=Phyra76897;rank=1 scaffold_21 . exon 146498 146606 . - . ID=Phyra76897.1;Parent=Phyra76897;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 147394 148344 . + . ID=Phyra76898;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000039;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 147394 148344 . + . ID=Phyra76898;Parent=Phyra76898;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 147394 147554 . + 0 ID=Phyra76898;Parent=Phyra76898;rank=1 scaffold_21 . exon 147394 147554 . + . ID=Phyra76898.1;Parent=Phyra76898;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 147624 147757 . + 0 ID=Phyra76898;Parent=Phyra76898;rank=2 scaffold_21 . exon 147624 147757 . + . ID=Phyra76898.2;Parent=Phyra76898;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 147842 148344 . + 0 ID=Phyra76898;Parent=Phyra76898;rank=3 scaffold_21 . exon 147842 148344 . + . ID=Phyra76898.3;Parent=Phyra76898;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . biological_region 150295 150298 0.999 + . logic_name=eponine scaffold_21 . repeat_region 152848 152868 . ? . description=dust scaffold_21 . biological_region 153395 153400 0.999 + . logic_name=eponine scaffold_21 . repeat_region 156451 158084 . ? . description=trf scaffold_21 ensembl protein_coding_gene 148640 150708 . - . ID=Phyra76899;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000040;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 148640 150708 . - . ID=Phyra76899;Parent=Phyra76899;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 148640 148667 . - 0 ID=Phyra76899;Parent=Phyra76899;rank=5 scaffold_21 . exon 148640 148667 . - . ID=Phyra76899.5;Parent=Phyra76899;constitutive=1;ensembl_phase=2;rank=5 scaffold_21 . CDS 148688 148950 . - 0 ID=Phyra76899;Parent=Phyra76899;rank=4 scaffold_21 . exon 148688 148950 . - . ID=Phyra76899.4;Parent=Phyra76899;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_21 . CDS 149024 150414 . - 0 ID=Phyra76899;Parent=Phyra76899;rank=3 scaffold_21 . exon 149024 150414 . - . ID=Phyra76899.3;Parent=Phyra76899;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 150493 150551 . - 0 ID=Phyra76899;Parent=Phyra76899;rank=2 scaffold_21 . exon 150493 150551 . - . ID=Phyra76899.2;Parent=Phyra76899;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 150611 150708 . - 0 ID=Phyra76899;Parent=Phyra76899;rank=1 scaffold_21 . exon 150611 150708 . - . ID=Phyra76899.1;Parent=Phyra76899;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 150893 152836 . - . ID=Phyra76900;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000041;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 150893 152836 . - . ID=Phyra76900;Parent=Phyra76900;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 150893 152836 . - 0 ID=Phyra76900;Parent=Phyra76900;rank=1 scaffold_21 . exon 150893 152836 . - . ID=Phyra76900.1;Parent=Phyra76900;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 154294 154836 . + . ID=Phyra76901;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000042;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 154294 154836 . + . ID=Phyra76901;Parent=Phyra76901;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 154294 154511 . + 0 ID=Phyra76901;Parent=Phyra76901;rank=1 scaffold_21 . exon 154294 154511 . + . ID=Phyra76901.1;Parent=Phyra76901;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 154592 154647 . + 0 ID=Phyra76901;Parent=Phyra76901;rank=2 scaffold_21 . exon 154592 154647 . + . ID=Phyra76901.2;Parent=Phyra76901;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 154730 154836 . + 0 ID=Phyra76901;Parent=Phyra76901;rank=3 scaffold_21 . exon 154730 154836 . + . ID=Phyra76901.3;Parent=Phyra76901;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 ensembl protein_coding_gene 156321 159128 . - . ID=Phyra76902;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000043;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 156321 159128 . - . ID=Phyra76902;Parent=Phyra76902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 156321 156345 . - 0 ID=Phyra76902;Parent=Phyra76902;rank=4 scaffold_21 . exon 156321 156345 . - . ID=Phyra76902.4;Parent=Phyra76902;constitutive=1;ensembl_phase=2;rank=4 scaffold_21 . CDS 156501 157712 . - 0 ID=Phyra76902;Parent=Phyra76902;rank=3 scaffold_21 . exon 156501 157712 . - . ID=Phyra76902.3;Parent=Phyra76902;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_21 . CDS 157796 158534 . - 0 ID=Phyra76902;Parent=Phyra76902;rank=2 scaffold_21 . exon 157796 158534 . - . ID=Phyra76902.2;Parent=Phyra76902;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_21 . CDS 158744 159128 . - 0 ID=Phyra76902;Parent=Phyra76902;rank=1 scaffold_21 . exon 158744 159128 . - . ID=Phyra76902.1;Parent=Phyra76902;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 159401 161047 . + . ID=Phyra94650;biotype=protein_coding;external_name=C_scaffold_21000011;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 159401 161047 . + . ID=Phyra94650;Parent=Phyra94650;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 159401 159494 . + 0 ID=Phyra94650;Parent=Phyra94650;rank=1 scaffold_21 . exon 159401 159494 . + . ID=Phyra94650.1;Parent=Phyra94650;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 159531 159793 . + 0 ID=Phyra94650;Parent=Phyra94650;rank=2 scaffold_21 . exon 159531 159793 . + . ID=Phyra94650.2;Parent=Phyra94650;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 159871 160035 . + 0 ID=Phyra94650;Parent=Phyra94650;rank=3 scaffold_21 . exon 159871 160035 . + . ID=Phyra94650.3;Parent=Phyra94650;constitutive=1;rank=3 scaffold_21 . CDS 160111 160193 . + 0 ID=Phyra94650;Parent=Phyra94650;rank=4 scaffold_21 . exon 160111 160193 . + . ID=Phyra94650.4;Parent=Phyra94650;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_21 . CDS 160480 161047 . + 0 ID=Phyra94650;Parent=Phyra94650;rank=5 scaffold_21 . exon 160480 161047 . + . ID=Phyra94650.5;Parent=Phyra94650;constitutive=1;ensembl_phase=2;rank=5 scaffold_21 ensembl protein_coding_gene 163431 164176 . - . ID=Phyra94651;biotype=protein_coding;external_name=C_scaffold_21000012;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 163431 164176 . - . ID=Phyra94651;Parent=Phyra94651;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 163431 163555 . - 0 ID=Phyra94651;Parent=Phyra94651;rank=3 scaffold_21 . exon 163431 163555 . - . ID=Phyra94651.3;Parent=Phyra94651;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 163775 163876 . - 0 ID=Phyra94651;Parent=Phyra94651;rank=2 scaffold_21 . exon 163775 163876 . - . ID=Phyra94651.2;Parent=Phyra94651;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 163951 164176 . - 0 ID=Phyra94651;Parent=Phyra94651;rank=1 scaffold_21 . exon 163951 164176 . - . ID=Phyra94651.1;Parent=Phyra94651;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 166129 170601 . - . ID=Phyra94652;biotype=protein_coding;external_name=C_scaffold_21000013;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 166129 170601 . - . ID=Phyra94652;Parent=Phyra94652;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 166129 166846 . - 0 ID=Phyra94652;Parent=Phyra94652;rank=7 scaffold_21 . exon 166129 166846 . - . ID=Phyra94652.7;Parent=Phyra94652;constitutive=1;ensembl_phase=2;rank=7 scaffold_21 . CDS 166926 167719 . - 0 ID=Phyra94652;Parent=Phyra94652;rank=6 scaffold_21 . exon 166926 167719 . - . ID=Phyra94652.6;Parent=Phyra94652;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_21 . CDS 168047 168089 . - 0 ID=Phyra94652;Parent=Phyra94652;rank=5 scaffold_21 . exon 168047 168089 . - . ID=Phyra94652.5;Parent=Phyra94652;constitutive=1;ensembl_phase=2;rank=5 scaffold_21 . CDS 168273 168477 . - 0 ID=Phyra94652;Parent=Phyra94652;rank=4 scaffold_21 . CDS 169311 170165 . - 0 ID=Phyra94652;Parent=Phyra94652;rank=3 scaffold_21 . CDS 170199 170337 . - 0 ID=Phyra94652;Parent=Phyra94652;rank=2 scaffold_21 . CDS 170383 170601 . - 0 ID=Phyra94652;Parent=Phyra94652;rank=1 scaffold_21 . biological_region 171014 171020 0.999 - . logic_name=eponine scaffold_21 . biological_region 171039 171042 0.999 - . logic_name=eponine scaffold_21 . biological_region 172048 172055 0.999 - . logic_name=eponine scaffold_21 . repeat_region 172228 172338 . ? . description=trf scaffold_21 . repeat_region 172490 172601 . + . description=(CAG)n scaffold_21 . repeat_region 172538 172601 . ? . description=dust scaffold_21 . repeat_region 172539 172601 . ? . description=trf scaffold_21 . repeat_region 172566 172640 . ? . description=trf scaffold_21 . repeat_region 172647 172718 . ? . description=trf scaffold_21 . biological_region 174436 174436 0.999 + . logic_name=eponine scaffold_21 ensembl protein_coding_gene 172773 175064 . + . ID=Phyra71465;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_21000006;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 172773 175064 . + . ID=Phyra71465;Parent=Phyra71465;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 172773 175064 . + 0 ID=Phyra71465;Parent=Phyra71465;rank=1 scaffold_21 . exon 172773 175064 . + . ID=Phyra71465.1;Parent=Phyra71465;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 171344 172003 . + . ID=Phyra76905;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000046;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 171344 172003 . + . ID=Phyra76905;Parent=Phyra76905;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 171344 172003 . + 0 ID=Phyra76905;Parent=Phyra76905;rank=1 scaffold_21 . exon 171344 172003 . + . ID=Phyra76905.1;Parent=Phyra76905;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 175489 178575 . - . ID=Phyra76907;biotype=protein_coding;description=Cellulose synthase 2 [Source:UniProtKB/TrEMBL%3BAcc:A5A602];external_name=CES2;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 175489 178575 . - . ID=Phyra76907;Parent=Phyra76907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 175489 178575 . - 0 ID=Phyra76907;Parent=Phyra76907;rank=1 scaffold_21 . exon 175489 178575 . - . ID=Phyra76907.1;Parent=Phyra76907;constitutive=1;rank=1 scaffold_21 . exon 168273 168477 . - . ID=Phyra94652.4;Parent=Phyra94652;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_21 . exon 169311 170165 . - . ID=Phyra94652.3;Parent=Phyra94652;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_21 . exon 170199 170337 . - . ID=Phyra94652.2;Parent=Phyra94652;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_21 . exon 170383 170601 . - . ID=Phyra94652.1;Parent=Phyra94652;constitutive=1;rank=1 scaffold_21 ensembl snRNA_gene 184901 185025 . - . ID=EPrPRAG00000000004;biotype=snRNA;description=U11 spliceosomal RNA [Source:RFAM%3BAcc:RF00548];external_name=U11;logic_name=ncrna_eg scaffold_21 ensembl snRNA 184901 185025 . - . ID=EPrPRAT00000000004;Parent=EPrPRAG00000000004;biotype=snRNA;logic_name=ncrna_eg scaffold_21 . exon 184901 185025 . - . ID=EPrPRAE00000000004;Parent=EPrPRAT00000000004;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 181083 184120 . + . ID=Phyra76908;biotype=protein_coding;description=Cellulose synthase 1 [Source:UniProtKB/TrEMBL%3BAcc:A5A601];external_name=CES1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 181083 184120 . + . ID=Phyra76908;Parent=Phyra76908;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 181083 181518 . + 0 ID=Phyra76908;Parent=Phyra76908;rank=1 scaffold_21 . exon 181083 181518 . + . ID=Phyra76908.1;Parent=Phyra76908;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 181572 184120 . + 0 ID=Phyra76908;Parent=Phyra76908;rank=2 scaffold_21 . exon 181572 184120 . + . ID=Phyra76908.2;Parent=Phyra76908;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 ensembl protein_coding_gene 184285 184866 . + . ID=Phyra76909;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000050;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 184285 184866 . + . ID=Phyra76909;Parent=Phyra76909;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 184285 184623 . + 0 ID=Phyra76909;Parent=Phyra76909;rank=1 scaffold_21 . exon 184285 184623 . + . ID=Phyra76909.1;Parent=Phyra76909;constitutive=1;rank=1 scaffold_21 . CDS 184690 184866 . + 0 ID=Phyra76909;Parent=Phyra76909;rank=2 scaffold_21 . exon 184690 184866 . + . ID=Phyra76909.2;Parent=Phyra76909;constitutive=1;rank=2 scaffold_21 ensembl protein_coding_gene 185959 188599 . + . ID=Phyra76910;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000051;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 185959 188599 . + . ID=Phyra76910;Parent=Phyra76910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 185959 186225 . + 0 ID=Phyra76910;Parent=Phyra76910;rank=1 scaffold_21 . exon 185959 186225 . + . ID=Phyra76910.1;Parent=Phyra76910;constitutive=1;rank=1 scaffold_21 . CDS 186295 186456 . + 0 ID=Phyra76910;Parent=Phyra76910;rank=2 scaffold_21 . exon 186295 186456 . + . ID=Phyra76910.2;Parent=Phyra76910;constitutive=1;rank=2 scaffold_21 . CDS 186536 188599 . + 0 ID=Phyra76910;Parent=Phyra76910;rank=3 scaffold_21 . exon 186536 188599 . + . ID=Phyra76910.3;Parent=Phyra76910;constitutive=1;rank=3 scaffold_21 . biological_region 188270 188274 0.999 + . logic_name=eponine scaffold_21 . biological_region 196375 196378 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 189032 189904 . - . ID=Phyra76911;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000052;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 189032 189904 . - . ID=Phyra76911;Parent=Phyra76911;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 189032 189904 . - 0 ID=Phyra76911;Parent=Phyra76911;rank=1 scaffold_21 . exon 189032 189904 . - . ID=Phyra76911.1;Parent=Phyra76911;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 190188 198152 . + . ID=Phyra76912;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000053;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 190188 198152 . + . ID=Phyra76912;Parent=Phyra76912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 190188 198152 . + 0 ID=Phyra76912;Parent=Phyra76912;rank=1 scaffold_21 . exon 190188 198152 . + . ID=Phyra76912.1;Parent=Phyra76912;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 202503 204485 . + . ID=Phyra71466;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_21000007;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 202503 204485 . + . ID=Phyra71466;Parent=Phyra71466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 202503 204485 . + 0 ID=Phyra71466;Parent=Phyra71466;rank=1 scaffold_21 . exon 202503 204485 . + . ID=Phyra71466.1;Parent=Phyra71466;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 204629 206533 . + . ID=Phyra71467;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_21000008;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 204629 206533 . + . ID=Phyra71467;Parent=Phyra71467;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 204629 204656 . + 0 ID=Phyra71467;Parent=Phyra71467;rank=1 scaffold_21 . exon 204629 204656 . + . ID=Phyra71467.1;Parent=Phyra71467;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 204750 205948 . + 0 ID=Phyra71467;Parent=Phyra71467;rank=2 scaffold_21 . exon 204750 205948 . + . ID=Phyra71467.2;Parent=Phyra71467;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 205970 206533 . + 0 ID=Phyra71467;Parent=Phyra71467;rank=3 scaffold_21 . exon 205970 206533 . + . ID=Phyra71467.3;Parent=Phyra71467;constitutive=1;rank=3 scaffold_21 ensembl protein_coding_gene 198259 201147 . - . ID=Phyra76913;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000054;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 198259 201147 . - . ID=Phyra76913;Parent=Phyra76913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 198259 201147 . - 0 ID=Phyra76913;Parent=Phyra76913;rank=1 scaffold_21 . exon 198259 201147 . - . ID=Phyra76913.1;Parent=Phyra76913;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 206709 209021 . + . ID=Phyra76916;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000057;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 206709 209021 . + . ID=Phyra76916;Parent=Phyra76916;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 206709 207384 . + 0 ID=Phyra76916;Parent=Phyra76916;rank=1 scaffold_21 . exon 206709 207384 . + . ID=Phyra76916.1;Parent=Phyra76916;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 207454 209021 . + 0 ID=Phyra76916;Parent=Phyra76916;rank=2 scaffold_21 . exon 207454 209021 . + . ID=Phyra76916.2;Parent=Phyra76916;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . biological_region 215228 215228 0.999 - . logic_name=eponine scaffold_21 . biological_region 216037 216041 0.999 - . logic_name=eponine scaffold_21 . repeat_region 217420 217439 . ? . description=trf scaffold_21 . repeat_region 217420 217439 . ? . description=dust scaffold_21 ensembl protein_coding_gene 215849 218887 . - . ID=Phyra44351;biotype=protein_coding;external_name=gwEuk.21.14.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 215849 218887 . - . ID=Phyra44351;Parent=Phyra44351;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 215849 217870 . - 0 ID=Phyra44351;Parent=Phyra44351;rank=3 scaffold_21 . exon 215849 217870 . - . ID=Phyra44351.3;Parent=Phyra44351;constitutive=1;rank=3 scaffold_21 . CDS 217955 218266 . - 0 ID=Phyra44351;Parent=Phyra44351;rank=2 scaffold_21 . CDS 218333 218887 . - 0 ID=Phyra44351;Parent=Phyra44351;rank=1 scaffold_21 ensembl protein_coding_gene 209336 211951 . - . ID=Phyra76917;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000058;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 209336 211951 . - . ID=Phyra76917;Parent=Phyra76917;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 209336 209344 . - 0 ID=Phyra76917;Parent=Phyra76917;rank=4 scaffold_21 . exon 209336 209344 . - . ID=Phyra76917.4;Parent=Phyra76917;constitutive=1;rank=4 scaffold_21 . CDS 209385 211638 . - 0 ID=Phyra76917;Parent=Phyra76917;rank=3 scaffold_21 . exon 209385 211638 . - . ID=Phyra76917.3;Parent=Phyra76917;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . CDS 211703 211759 . - 0 ID=Phyra76917;Parent=Phyra76917;rank=2 scaffold_21 . exon 211703 211759 . - . ID=Phyra76917.2;Parent=Phyra76917;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_21 . CDS 211884 211951 . - 0 ID=Phyra76917;Parent=Phyra76917;rank=1 scaffold_21 . exon 211884 211951 . - . ID=Phyra76917.1;Parent=Phyra76917;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 212107 212981 . + . ID=Phyra76918;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000059;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 212107 212981 . + . ID=Phyra76918;Parent=Phyra76918;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 212107 212327 . + 0 ID=Phyra76918;Parent=Phyra76918;rank=1 scaffold_21 . exon 212107 212327 . + . ID=Phyra76918.1;Parent=Phyra76918;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 212396 212981 . + 0 ID=Phyra76918;Parent=Phyra76918;rank=2 scaffold_21 . exon 212396 212981 . + . ID=Phyra76918.2;Parent=Phyra76918;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . exon 217955 218266 . - . ID=Phyra44351.2;Parent=Phyra44351;constitutive=1;rank=2 scaffold_21 . exon 218333 218887 . - . ID=Phyra44351.1;Parent=Phyra44351;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 222475 224603 . + . ID=Phyra71468;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_21000009;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 222475 224603 . + . ID=Phyra71468;Parent=Phyra71468;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 222475 222517 . + 0 ID=Phyra71468;Parent=Phyra71468;rank=1 scaffold_21 . exon 222475 222517 . + . ID=Phyra71468.1;Parent=Phyra71468;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 222550 224603 . + 0 ID=Phyra71468;Parent=Phyra71468;rank=2 scaffold_21 . exon 222550 224603 . + . ID=Phyra71468.2;Parent=Phyra71468;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 ensembl protein_coding_gene 220854 221651 . + . ID=Phyra76920;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000061;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 220854 221651 . + . ID=Phyra76920;Parent=Phyra76920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 220854 221651 . + 0 ID=Phyra76920;Parent=Phyra76920;rank=1 scaffold_21 . exon 220854 221651 . + . ID=Phyra76920.1;Parent=Phyra76920;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 224720 226162 . - . ID=Phyra76922;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000063;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 224720 226162 . - . ID=Phyra76922;Parent=Phyra76922;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 224720 226162 . - 0 ID=Phyra76922;Parent=Phyra76922;rank=1 scaffold_21 . exon 224720 226162 . - . ID=Phyra76922.1;Parent=Phyra76922;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 227417 229573 . + . ID=Phyra76923;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000064;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 227417 229573 . + . ID=Phyra76923;Parent=Phyra76923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 227417 228989 . + 0 ID=Phyra76923;Parent=Phyra76923;rank=1 scaffold_21 . exon 227417 228989 . + . ID=Phyra76923.1;Parent=Phyra76923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 229064 229211 . + 0 ID=Phyra76923;Parent=Phyra76923;rank=2 scaffold_21 . CDS 229288 229573 . + 0 ID=Phyra76923;Parent=Phyra76923;rank=3 scaffold_21 . biological_region 227729 227731 0.999 + . logic_name=eponine scaffold_21 . biological_region 227766 227769 0.999 + . logic_name=eponine scaffold_21 . biological_region 227769 227770 0.999 - . logic_name=eponine scaffold_21 . biological_region 227780 227783 0.999 - . logic_name=eponine scaffold_21 . biological_region 227819 227826 0.999 + . logic_name=eponine scaffold_21 . biological_region 227953 227958 0.999 - . logic_name=eponine scaffold_21 . repeat_region 228166 228213 . ? . description=trf scaffold_21 . repeat_region 229534 229553 . ? . description=trf scaffold_21 . biological_region 230223 230227 0.999 - . logic_name=eponine scaffold_21 . biological_region 230701 230704 0.999 - . logic_name=eponine scaffold_21 . repeat_region 231001 231060 . ? . description=dust scaffold_21 . repeat_region 231006 231046 . ? . description=trf scaffold_21 . biological_region 231163 231164 0.999 - . logic_name=eponine scaffold_21 . biological_region 231189 231190 0.999 + . logic_name=eponine scaffold_21 . biological_region 231219 231220 0.999 + . logic_name=eponine scaffold_21 . repeat_region 232106 232114 . ? . description=dust scaffold_21 . biological_region 232135 232142 0.999 + . logic_name=eponine scaffold_21 . repeat_region 232172 232198 . ? . description=trf scaffold_21 . repeat_region 232172 232198 . ? . description=dust scaffold_21 . biological_region 234616 234621 0.999 - . logic_name=eponine scaffold_21 . repeat_region 236981 237007 . ? . description=trf scaffold_21 ensembl protein_coding_gene 232995 234239 . - . ID=Phyra44361;biotype=protein_coding;external_name=gwEuk.21.24.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 232995 234239 . - . ID=Phyra44361;Parent=Phyra44361;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 232995 233850 . - 0 ID=Phyra44361;Parent=Phyra44361;rank=3 scaffold_21 . exon 232995 233850 . - . ID=Phyra44361.3;Parent=Phyra44361;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . CDS 233909 234000 . - 0 ID=Phyra44361;Parent=Phyra44361;rank=2 scaffold_21 . exon 233909 234000 . - . ID=Phyra44361.2;Parent=Phyra44361;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_21 . CDS 234063 234239 . - 0 ID=Phyra44361;Parent=Phyra44361;rank=1 scaffold_21 . exon 234063 234239 . - . ID=Phyra44361.1;Parent=Phyra44361;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 234531 235529 . + . ID=Phyra71470;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_21000011;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 234531 235529 . + . ID=Phyra71470;Parent=Phyra71470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 234531 234631 . + 0 ID=Phyra71470;Parent=Phyra71470;rank=1 scaffold_21 . exon 234531 234631 . + . ID=Phyra71470.1;Parent=Phyra71470;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 234699 234909 . + 0 ID=Phyra71470;Parent=Phyra71470;rank=2 scaffold_21 . exon 234699 234909 . + . ID=Phyra71470.2;Parent=Phyra71470;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 234981 235006 . + 0 ID=Phyra71470;Parent=Phyra71470;rank=3 scaffold_21 . exon 234981 235006 . + . ID=Phyra71470.3;Parent=Phyra71470;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_21 . CDS 235074 235134 . + 0 ID=Phyra71470;Parent=Phyra71470;rank=4 scaffold_21 . exon 235074 235134 . + . ID=Phyra71470.4;Parent=Phyra71470;constitutive=1;ensembl_phase=2;rank=4 scaffold_21 . CDS 235206 235529 . + 0 ID=Phyra71470;Parent=Phyra71470;rank=5 scaffold_21 . exon 235206 235529 . + . ID=Phyra71470.5;Parent=Phyra71470;constitutive=1;rank=5 scaffold_21 . exon 229064 229211 . + . ID=Phyra76923.2;Parent=Phyra76923;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_21 . exon 229288 229573 . + . ID=Phyra76923.3;Parent=Phyra76923;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 ensembl protein_coding_gene 230003 231361 . - . ID=Phyra76924;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000065;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 230003 231361 . - . ID=Phyra76924;Parent=Phyra76924;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 230003 231361 . - 0 ID=Phyra76924;Parent=Phyra76924;rank=1 scaffold_21 . exon 230003 231361 . - . ID=Phyra76924.1;Parent=Phyra76924;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 232055 232628 . + . ID=Phyra76925;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000066;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 232055 232628 . + . ID=Phyra76925;Parent=Phyra76925;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 232055 232351 . + 0 ID=Phyra76925;Parent=Phyra76925;rank=1 scaffold_21 . exon 232055 232351 . + . ID=Phyra76925.1;Parent=Phyra76925;constitutive=1;rank=1 scaffold_21 . CDS 232425 232628 . + 0 ID=Phyra76925;Parent=Phyra76925;rank=2 scaffold_21 . exon 232425 232628 . + . ID=Phyra76925.2;Parent=Phyra76925;constitutive=1;rank=2 scaffold_21 ensembl protein_coding_gene 235770 236663 . - . ID=Phyra76928;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000069;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 235770 236663 . - . ID=Phyra76928;Parent=Phyra76928;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 235770 236663 . - 0 ID=Phyra76928;Parent=Phyra76928;rank=1 scaffold_21 . exon 235770 236663 . - . ID=Phyra76928.1;Parent=Phyra76928;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 237977 240205 . - . ID=Phyra76929;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000070;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 237977 240205 . - . ID=Phyra76929;Parent=Phyra76929;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 237977 240205 . - 0 ID=Phyra76929;Parent=Phyra76929;rank=1 scaffold_21 . exon 237977 240205 . - . ID=Phyra76929.1;Parent=Phyra76929;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 240371 241768 . + . ID=Phyra76930;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000071;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 240371 241768 . + . ID=Phyra76930;Parent=Phyra76930;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 240371 241441 . + 0 ID=Phyra76930;Parent=Phyra76930;rank=1 scaffold_21 . exon 240371 241441 . + . ID=Phyra76930.1;Parent=Phyra76930;constitutive=1;rank=1 scaffold_21 . CDS 241562 241768 . + 0 ID=Phyra76930;Parent=Phyra76930;rank=2 scaffold_21 . exon 241562 241768 . + . ID=Phyra76930.2;Parent=Phyra76930;constitutive=1;rank=2 scaffold_21 ensembl protein_coding_gene 241884 245580 . - . ID=Phyra76931;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000072;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 241884 245580 . - . ID=Phyra76931;Parent=Phyra76931;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 241884 245300 . - 0 ID=Phyra76931;Parent=Phyra76931;rank=2 scaffold_21 . exon 241884 245300 . - . ID=Phyra76931.2;Parent=Phyra76931;constitutive=1;rank=2 scaffold_21 . CDS 245359 245580 . - 0 ID=Phyra76931;Parent=Phyra76931;rank=1 scaffold_21 . exon 245359 245580 . - . ID=Phyra76931.1;Parent=Phyra76931;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 246419 252789 . - . ID=Phyra76932;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000073;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 246419 252789 . - . ID=Phyra76932;Parent=Phyra76932;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 246419 248439 . - 0 ID=Phyra76932;Parent=Phyra76932;rank=5 scaffold_21 . exon 246419 248439 . - . ID=Phyra76932.5;Parent=Phyra76932;constitutive=1;ensembl_phase=1;rank=5 scaffold_21 . CDS 248529 248628 . - 0 ID=Phyra76932;Parent=Phyra76932;rank=4 scaffold_21 . CDS 248682 248736 . - 0 ID=Phyra76932;Parent=Phyra76932;rank=3 scaffold_21 . CDS 248797 248933 . - 0 ID=Phyra76932;Parent=Phyra76932;rank=2 scaffold_21 . CDS 248995 252789 . - 0 ID=Phyra76932;Parent=Phyra76932;rank=1 scaffold_21 . biological_region 250307 250307 0.999 - . logic_name=eponine scaffold_21 . biological_region 251805 251807 0.999 - . logic_name=eponine scaffold_21 . biological_region 252280 252283 0.999 - . logic_name=eponine scaffold_21 . biological_region 252893 252893 0.999 + . logic_name=eponine scaffold_21 . biological_region 252971 252976 0.999 + . logic_name=eponine scaffold_21 . exon 248529 248628 . - . ID=Phyra76932.4;Parent=Phyra76932;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_21 . exon 248682 248736 . - . ID=Phyra76932.3;Parent=Phyra76932;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . exon 248797 248933 . - . ID=Phyra76932.2;Parent=Phyra76932;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_21 . exon 248995 252789 . - . ID=Phyra76932.1;Parent=Phyra76932;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 253008 256724 . + . ID=Phyra76933;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000074;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 253008 256724 . + . ID=Phyra76933;Parent=Phyra76933;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 253008 256724 . + 0 ID=Phyra76933;Parent=Phyra76933;rank=1 scaffold_21 . exon 253008 256724 . + . ID=Phyra76933.1;Parent=Phyra76933;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 257852 260193 . + . ID=Phyra76934;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000075;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 257852 260193 . + . ID=Phyra76934;Parent=Phyra76934;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 257852 258072 . + 0 ID=Phyra76934;Parent=Phyra76934;rank=1 scaffold_21 . exon 257852 258072 . + . ID=Phyra76934.1;Parent=Phyra76934;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 258159 260193 . + 0 ID=Phyra76934;Parent=Phyra76934;rank=2 scaffold_21 . exon 258159 260193 . + . ID=Phyra76934.2;Parent=Phyra76934;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 ensembl protein_coding_gene 261426 263231 . + . ID=Phyra76936;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000077;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 261426 263231 . + . ID=Phyra76936;Parent=Phyra76936;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 261426 263231 . + 0 ID=Phyra76936;Parent=Phyra76936;rank=1 scaffold_21 . exon 261426 263231 . + . ID=Phyra76936.1;Parent=Phyra76936;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 263516 266152 . + . ID=Phyra76937;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000078;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 263516 266152 . + . ID=Phyra76937;Parent=Phyra76937;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 263516 264918 . + 0 ID=Phyra76937;Parent=Phyra76937;rank=1 scaffold_21 . exon 263516 264918 . + . ID=Phyra76937.1;Parent=Phyra76937;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 265135 266152 . + 0 ID=Phyra76937;Parent=Phyra76937;rank=2 scaffold_21 . exon 265135 266152 . + . ID=Phyra76937.2;Parent=Phyra76937;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 ensembl protein_coding_gene 260400 261283 . - . ID=Phyra94654;biotype=protein_coding;external_name=C_scaffold_21000015;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 260400 261283 . - . ID=Phyra94654;Parent=Phyra94654;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 260400 260644 . - 0 ID=Phyra94654;Parent=Phyra94654;rank=4 scaffold_21 . exon 260400 260644 . - . ID=Phyra94654.4;Parent=Phyra94654;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_21 . CDS 260675 260867 . - 0 ID=Phyra94654;Parent=Phyra94654;rank=3 scaffold_21 . exon 260675 260867 . - . ID=Phyra94654.3;Parent=Phyra94654;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . CDS 260938 261098 . - 0 ID=Phyra94654;Parent=Phyra94654;rank=2 scaffold_21 . exon 260938 261098 . - . ID=Phyra94654.2;Parent=Phyra94654;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_21 . CDS 261170 261283 . - 0 ID=Phyra94654;Parent=Phyra94654;rank=1 scaffold_21 . exon 261170 261283 . - . ID=Phyra94654.1;Parent=Phyra94654;constitutive=1;rank=1 scaffold_21 . biological_region 267942 267943 0.999 + . logic_name=eponine scaffold_21 . repeat_region 269214 269249 . ? . description=trf scaffold_21 . repeat_region 270813 270859 . ? . description=trf scaffold_21 ensembl protein_coding_gene 267779 268846 . - . ID=Phyra76938;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000079;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 267779 268846 . - . ID=Phyra76938;Parent=Phyra76938;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 267779 268282 . - 0 ID=Phyra76938;Parent=Phyra76938;rank=2 scaffold_21 . exon 267779 268282 . - . ID=Phyra76938.2;Parent=Phyra76938;constitutive=1;rank=2 scaffold_21 . CDS 268820 268846 . - 0 ID=Phyra76938;Parent=Phyra76938;rank=1 scaffold_21 . exon 268820 268846 . - . ID=Phyra76938.1;Parent=Phyra76938;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 269177 269942 . - . ID=Phyra76939;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000080;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 269177 269942 . - . ID=Phyra76939;Parent=Phyra76939;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 269177 269678 . - 0 ID=Phyra76939;Parent=Phyra76939;rank=2 scaffold_21 . exon 269177 269678 . - . ID=Phyra76939.2;Parent=Phyra76939;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 269737 269942 . - 0 ID=Phyra76939;Parent=Phyra76939;rank=1 scaffold_21 . exon 269737 269942 . - . ID=Phyra76939.1;Parent=Phyra76939;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 270743 272093 . - . ID=Phyra76940;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000081;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 270743 272093 . - . ID=Phyra76940;Parent=Phyra76940;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 270743 271802 . - 0 ID=Phyra76940;Parent=Phyra76940;rank=2 scaffold_21 . exon 270743 271802 . - . ID=Phyra76940.2;Parent=Phyra76940;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 271888 272093 . - 0 ID=Phyra76940;Parent=Phyra76940;rank=1 scaffold_21 . exon 271888 272093 . - . ID=Phyra76940.1;Parent=Phyra76940;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 273821 274398 . - . ID=Phyra76941;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000082;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 273821 274398 . - . ID=Phyra76941;Parent=Phyra76941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 273821 273843 . - 0 ID=Phyra76941;Parent=Phyra76941;rank=3 scaffold_21 . exon 273821 273843 . - . ID=Phyra76941.3;Parent=Phyra76941;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 273876 274110 . - 0 ID=Phyra76941;Parent=Phyra76941;rank=2 scaffold_21 . exon 273876 274110 . - . ID=Phyra76941.2;Parent=Phyra76941;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_21 . CDS 274294 274398 . - 0 ID=Phyra76941;Parent=Phyra76941;rank=1 scaffold_21 . exon 274294 274398 . - . ID=Phyra76941.1;Parent=Phyra76941;constitutive=1;rank=1 scaffold_21 . repeat_region 279221 279229 . ? . description=dust scaffold_21 ensembl protein_coding_gene 279362 280526 . - . ID=Phyra76942;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000083;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 279362 280526 . - . ID=Phyra76942;Parent=Phyra76942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 279362 280235 . - 0 ID=Phyra76942;Parent=Phyra76942;rank=2 scaffold_21 . exon 279362 280235 . - . ID=Phyra76942.2;Parent=Phyra76942;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 280321 280526 . - 0 ID=Phyra76942;Parent=Phyra76942;rank=1 scaffold_21 . exon 280321 280526 . - . ID=Phyra76942.1;Parent=Phyra76942;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 280880 282026 . - . ID=Phyra76943;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000084;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 280880 282026 . - . ID=Phyra76943;Parent=Phyra76943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 280880 281753 . - 0 ID=Phyra76943;Parent=Phyra76943;rank=2 scaffold_21 . exon 280880 281753 . - . ID=Phyra76943.2;Parent=Phyra76943;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 281821 282026 . - 0 ID=Phyra76943;Parent=Phyra76943;rank=1 scaffold_21 . exon 281821 282026 . - . ID=Phyra76943.1;Parent=Phyra76943;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 282684 283839 . - . ID=Phyra76944;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000085;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 282684 283839 . - . ID=Phyra76944;Parent=Phyra76944;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 282684 283566 . - 0 ID=Phyra76944;Parent=Phyra76944;rank=2 scaffold_21 . exon 282684 283566 . - . ID=Phyra76944.2;Parent=Phyra76944;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 283631 283839 . - 0 ID=Phyra76944;Parent=Phyra76944;rank=1 scaffold_21 . exon 283631 283839 . - . ID=Phyra76944.1;Parent=Phyra76944;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 284591 286189 . + . ID=Phyra76945;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000086;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 284591 286189 . + . ID=Phyra76945;Parent=Phyra76945;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 284591 285671 . + 0 ID=Phyra76945;Parent=Phyra76945;rank=1 scaffold_21 . exon 284591 285671 . + . ID=Phyra76945.1;Parent=Phyra76945;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 285822 286189 . + 0 ID=Phyra76945;Parent=Phyra76945;rank=2 scaffold_21 . exon 285822 286189 . + . ID=Phyra76945.2;Parent=Phyra76945;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . biological_region 292801 292804 0.999 - . logic_name=eponine scaffold_21 . biological_region 292948 292952 0.999 - . logic_name=eponine scaffold_21 . biological_region 292956 292970 0.999 + . logic_name=eponine scaffold_21 . biological_region 293021 293025 0.999 - . logic_name=eponine scaffold_21 . biological_region 295024 295028 0.999 + . logic_name=eponine scaffold_21 . biological_region 296047 296048 0.999 + . logic_name=eponine scaffold_21 ensembl protein_coding_gene 290549 293107 . - . ID=Phyra76948;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000089;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 290549 293107 . - . ID=Phyra76948;Parent=Phyra76948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 290549 293107 . - 0 ID=Phyra76948;Parent=Phyra76948;rank=1 scaffold_21 . exon 290549 293107 . - . ID=Phyra76948.1;Parent=Phyra76948;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 295088 299755 . + . ID=Phyra76949;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000090;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 295088 299755 . + . ID=Phyra76949;Parent=Phyra76949;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 295088 295141 . + 0 ID=Phyra76949;Parent=Phyra76949;rank=1 scaffold_21 . exon 295088 295141 . + . ID=Phyra76949.1;Parent=Phyra76949;constitutive=1;rank=1 scaffold_21 . CDS 295201 295381 . + 0 ID=Phyra76949;Parent=Phyra76949;rank=2 scaffold_21 . exon 295201 295381 . + . ID=Phyra76949.2;Parent=Phyra76949;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_21 . CDS 295441 295640 . + 0 ID=Phyra76949;Parent=Phyra76949;rank=3 scaffold_21 . exon 295441 295640 . + . ID=Phyra76949.3;Parent=Phyra76949;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 295708 295794 . + 0 ID=Phyra76949;Parent=Phyra76949;rank=4 scaffold_21 . exon 295708 295794 . + . ID=Phyra76949.4;Parent=Phyra76949;constitutive=1;rank=4 scaffold_21 . CDS 295863 296096 . + 0 ID=Phyra76949;Parent=Phyra76949;rank=5 scaffold_21 . exon 295863 296096 . + . ID=Phyra76949.5;Parent=Phyra76949;constitutive=1;rank=5 scaffold_21 . CDS 296232 296308 . + 0 ID=Phyra76949;Parent=Phyra76949;rank=6 scaffold_21 . exon 296232 296308 . + . ID=Phyra76949.6;Parent=Phyra76949;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_21 . CDS 296363 296605 . + 0 ID=Phyra76949;Parent=Phyra76949;rank=7 scaffold_21 . exon 296363 296605 . + . ID=Phyra76949.7;Parent=Phyra76949;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_21 . CDS 296671 299755 . + 0 ID=Phyra76949;Parent=Phyra76949;rank=8 scaffold_21 ensembl protein_coding_gene 287286 290374 . + . ID=Phyra94657;biotype=protein_coding;external_name=C_scaffold_21000018;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 287286 290374 . + . ID=Phyra94657;Parent=Phyra94657;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 287286 287563 . + 0 ID=Phyra94657;Parent=Phyra94657;rank=1 scaffold_21 . exon 287286 287563 . + . ID=Phyra94657.1;Parent=Phyra94657;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 287642 287693 . + 0 ID=Phyra94657;Parent=Phyra94657;rank=2 scaffold_21 . exon 287642 287693 . + . ID=Phyra94657.2;Parent=Phyra94657;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 287771 287961 . + 0 ID=Phyra94657;Parent=Phyra94657;rank=3 scaffold_21 . exon 287771 287961 . + . ID=Phyra94657.3;Parent=Phyra94657;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_21 . CDS 288026 288336 . + 0 ID=Phyra94657;Parent=Phyra94657;rank=4 scaffold_21 . exon 288026 288336 . + . ID=Phyra94657.4;Parent=Phyra94657;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_21 . CDS 288565 288721 . + 0 ID=Phyra94657;Parent=Phyra94657;rank=5 scaffold_21 . exon 288565 288721 . + . ID=Phyra94657.5;Parent=Phyra94657;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_21 . CDS 288804 288872 . + 0 ID=Phyra94657;Parent=Phyra94657;rank=6 scaffold_21 . exon 288804 288872 . + . ID=Phyra94657.6;Parent=Phyra94657;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_21 . CDS 288946 289649 . + 0 ID=Phyra94657;Parent=Phyra94657;rank=7 scaffold_21 . exon 288946 289649 . + . ID=Phyra94657.7;Parent=Phyra94657;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_21 . CDS 289815 289953 . + 0 ID=Phyra94657;Parent=Phyra94657;rank=8 scaffold_21 . exon 289815 289953 . + . ID=Phyra94657.8;Parent=Phyra94657;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_21 . CDS 290023 290374 . + 0 ID=Phyra94657;Parent=Phyra94657;rank=9 scaffold_21 . exon 290023 290374 . + . ID=Phyra94657.9;Parent=Phyra94657;constitutive=1;ensembl_phase=2;rank=9 scaffold_21 . repeat_region 296672 296717 . ? . description=trf scaffold_21 . repeat_region 303823 303882 . ? . description=trf scaffold_21 ensembl protein_coding_gene 303353 303718 . - . ID=Phyra44387;biotype=protein_coding;external_name=gwEuk.21.50.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 303353 303718 . - . ID=Phyra44387;Parent=Phyra44387;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 303353 303718 . - 0 ID=Phyra44387;Parent=Phyra44387;rank=1 scaffold_21 . exon 303353 303718 . - . ID=Phyra44387.1;Parent=Phyra44387;constitutive=1;rank=1 scaffold_21 . exon 296671 299755 . + . ID=Phyra76949.8;Parent=Phyra76949;constitutive=1;ensembl_phase=2;rank=8 scaffold_21 ensembl protein_coding_gene 299922 301243 . - . ID=Phyra76950;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000091;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 299922 301243 . - . ID=Phyra76950;Parent=Phyra76950;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 299922 300998 . - 0 ID=Phyra76950;Parent=Phyra76950;rank=2 scaffold_21 . exon 299922 300998 . - . ID=Phyra76950.2;Parent=Phyra76950;constitutive=1;rank=2 scaffold_21 . CDS 301067 301243 . - 0 ID=Phyra76950;Parent=Phyra76950;rank=1 scaffold_21 . exon 301067 301243 . - . ID=Phyra76950.1;Parent=Phyra76950;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 304270 305292 . - . ID=Phyra76952;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000093;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 304270 305292 . - . ID=Phyra76952;Parent=Phyra76952;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 304270 305292 . - 0 ID=Phyra76952;Parent=Phyra76952;rank=1 scaffold_21 . exon 304270 305292 . - . ID=Phyra76952.1;Parent=Phyra76952;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 305770 306672 . - . ID=Phyra76953;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000094;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 305770 306672 . - . ID=Phyra76953;Parent=Phyra76953;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 305770 306269 . - 0 ID=Phyra76953;Parent=Phyra76953;rank=2 scaffold_21 . exon 305770 306269 . - . ID=Phyra76953.2;Parent=Phyra76953;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 306333 306672 . - 0 ID=Phyra76953;Parent=Phyra76953;rank=1 scaffold_21 . exon 306333 306672 . - . ID=Phyra76953.1;Parent=Phyra76953;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . repeat_region 306715 306723 . ? . description=dust scaffold_21 . biological_region 308602 308605 0.999 - . logic_name=eponine scaffold_21 . repeat_region 310409 310417 . ? . description=dust scaffold_21 . repeat_region 315102 315110 . ? . description=dust scaffold_21 . repeat_region 316216 316231 . ? . description=dust scaffold_21 ensembl protein_coding_gene 309500 310225 . + . ID=Phyra44398;biotype=protein_coding;external_name=gwEuk.21.61.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 309500 310225 . + . ID=Phyra44398;Parent=Phyra44398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 309500 310225 . + 0 ID=Phyra44398;Parent=Phyra44398;rank=1 scaffold_21 . exon 309500 310225 . + . ID=Phyra44398.1;Parent=Phyra44398;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 308160 308975 . + . ID=Phyra44402;biotype=protein_coding;external_name=gwEuk.21.65.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 308160 308975 . + . ID=Phyra44402;Parent=Phyra44402;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 308160 308975 . + 0 ID=Phyra44402;Parent=Phyra44402;rank=1 scaffold_21 . exon 308160 308975 . + . ID=Phyra44402.1;Parent=Phyra44402;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 313755 314450 . - . ID=Phyra44405;biotype=protein_coding;external_name=gwEuk.21.68.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 313755 314450 . - . ID=Phyra44405;Parent=Phyra44405;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 313755 314450 . - 0 ID=Phyra44405;Parent=Phyra44405;rank=1 scaffold_21 . exon 313755 314450 . - . ID=Phyra44405.1;Parent=Phyra44405;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 310981 313320 . + . ID=Phyra76956;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000097;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 310981 313320 . + . ID=Phyra76956;Parent=Phyra76956;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 310981 313320 . + 0 ID=Phyra76956;Parent=Phyra76956;rank=1 scaffold_21 . exon 310981 313320 . + . ID=Phyra76956.1;Parent=Phyra76956;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 314780 315649 . - . ID=Phyra76958;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000099;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 314780 315649 . - . ID=Phyra76958;Parent=Phyra76958;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 314780 314976 . - 0 ID=Phyra76958;Parent=Phyra76958;rank=2 scaffold_21 . exon 314780 314976 . - . ID=Phyra76958.2;Parent=Phyra76958;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 315337 315649 . - 0 ID=Phyra76958;Parent=Phyra76958;rank=1 scaffold_21 . exon 315337 315649 . - . ID=Phyra76958.1;Parent=Phyra76958;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . biological_region 326371 326372 0.999 + . logic_name=eponine scaffold_21 . biological_region 328544 328546 0.999 + . logic_name=eponine scaffold_21 . biological_region 333369 333373 0.999 + . logic_name=eponine scaffold_21 . biological_region 333455 333460 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 329373 331361 . - . ID=Phyra76959;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000100;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 329373 331361 . - . ID=Phyra76959;Parent=Phyra76959;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 329373 330226 . - 0 ID=Phyra76959;Parent=Phyra76959;rank=3 scaffold_21 . exon 329373 330226 . - . ID=Phyra76959.3;Parent=Phyra76959;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 330272 330593 . - 0 ID=Phyra76959;Parent=Phyra76959;rank=2 scaffold_21 . exon 330272 330593 . - . ID=Phyra76959.2;Parent=Phyra76959;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_21 . CDS 330693 331361 . - 0 ID=Phyra76959;Parent=Phyra76959;rank=1 scaffold_21 . exon 330693 331361 . - . ID=Phyra76959.1;Parent=Phyra76959;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 332351 336434 . + . ID=Phyra76960;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000101;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 332351 336434 . + . ID=Phyra76960;Parent=Phyra76960;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 332351 334193 . + 0 ID=Phyra76960;Parent=Phyra76960;rank=1 scaffold_21 . exon 332351 334193 . + . ID=Phyra76960.1;Parent=Phyra76960;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 334606 336434 . + 0 ID=Phyra76960;Parent=Phyra76960;rank=2 scaffold_21 . exon 334606 336434 . + . ID=Phyra76960.2;Parent=Phyra76960;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 ensembl protein_coding_gene 340268 343596 . + . ID=Phyra94660;biotype=protein_coding;external_name=C_scaffold_21000021;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 340268 343596 . + . ID=Phyra94660;Parent=Phyra94660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 340268 340487 . + 0 ID=Phyra94660;Parent=Phyra94660;rank=1 scaffold_21 . exon 340268 340487 . + . ID=Phyra94660.1;Parent=Phyra94660;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 341027 342673 . + 0 ID=Phyra94660;Parent=Phyra94660;rank=2 scaffold_21 . exon 341027 342673 . + . ID=Phyra94660.2;Parent=Phyra94660;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 342783 343491 . + 0 ID=Phyra94660;Parent=Phyra94660;rank=3 scaffold_21 . exon 342783 343491 . + . ID=Phyra94660.3;Parent=Phyra94660;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_21 . CDS 343551 343596 . + 0 ID=Phyra94660;Parent=Phyra94660;rank=4 scaffold_21 . exon 343551 343596 . + . ID=Phyra94660.4;Parent=Phyra94660;constitutive=1;ensembl_phase=2;rank=4 scaffold_21 . repeat_region 349577 349626 . ? . description=dust scaffold_21 . biological_region 352096 352101 0.999 + . logic_name=eponine scaffold_21 . biological_region 352183 352187 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 354330 355172 . + . ID=Phyra44415;biotype=protein_coding;external_name=gwEuk.21.78.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 354330 355172 . + . ID=Phyra44415;Parent=Phyra44415;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 354330 355172 . + 0 ID=Phyra44415;Parent=Phyra44415;rank=1 scaffold_21 . exon 354330 355172 . + . ID=Phyra44415.1;Parent=Phyra44415;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 346593 350557 . - . ID=Phyra76962;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000103;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 346593 350557 . - . ID=Phyra76962;Parent=Phyra76962;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 346593 348421 . - 0 ID=Phyra76962;Parent=Phyra76962;rank=3 scaffold_21 . exon 346593 348421 . - . ID=Phyra76962.3;Parent=Phyra76962;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 348834 349424 . - 0 ID=Phyra76962;Parent=Phyra76962;rank=2 scaffold_21 . exon 348834 349424 . - . ID=Phyra76962.2;Parent=Phyra76962;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 349690 350557 . - 0 ID=Phyra76962;Parent=Phyra76962;rank=1 scaffold_21 . exon 349690 350557 . - . ID=Phyra76962.1;Parent=Phyra76962;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 351354 353204 . - . ID=Phyra76963;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000104;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 351354 353204 . - . ID=Phyra76963;Parent=Phyra76963;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 351354 353204 . - 0 ID=Phyra76963;Parent=Phyra76963;rank=1 scaffold_21 . exon 351354 353204 . - . ID=Phyra76963.1;Parent=Phyra76963;constitutive=1;rank=1 scaffold_21 . repeat_region 362155 362178 . ? . description=trf scaffold_21 . repeat_region 364338 364388 . ? . description=trf scaffold_21 ensembl protein_coding_gene 364477 365820 . + . ID=Phyra71473;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_21000014;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 364477 365820 . + . ID=Phyra71473;Parent=Phyra71473;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 364477 365820 . + 0 ID=Phyra71473;Parent=Phyra71473;rank=1 scaffold_21 . exon 364477 365820 . + . ID=Phyra71473.1;Parent=Phyra71473;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 356738 357190 . - . ID=Phyra76965;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000106;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 356738 357190 . - . ID=Phyra76965;Parent=Phyra76965;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 356738 357190 . - 0 ID=Phyra76965;Parent=Phyra76965;rank=1 scaffold_21 . exon 356738 357190 . - . ID=Phyra76965.1;Parent=Phyra76965;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 358097 359558 . + . ID=Phyra76966;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000107;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 358097 359558 . + . ID=Phyra76966;Parent=Phyra76966;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 358097 359475 . + 0 ID=Phyra76966;Parent=Phyra76966;rank=1 scaffold_21 . exon 358097 359475 . + . ID=Phyra76966.1;Parent=Phyra76966;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 359504 359558 . + 0 ID=Phyra76966;Parent=Phyra76966;rank=2 scaffold_21 . exon 359504 359558 . + . ID=Phyra76966.2;Parent=Phyra76966;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 ensembl protein_coding_gene 359987 364300 . - . ID=Phyra76967;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000108;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 359987 364300 . - . ID=Phyra76967;Parent=Phyra76967;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 359987 364300 . - 0 ID=Phyra76967;Parent=Phyra76967;rank=1 scaffold_21 . exon 359987 364300 . - . ID=Phyra76967.1;Parent=Phyra76967;constitutive=1;rank=1 scaffold_21 . biological_region 370232 370237 0.999 + . logic_name=eponine scaffold_21 . biological_region 370251 370251 0.999 + . logic_name=eponine scaffold_21 . biological_region 370956 370961 0.999 + . logic_name=eponine scaffold_21 . biological_region 371843 371844 0.999 + . logic_name=eponine scaffold_21 . biological_region 371901 371904 0.999 + . logic_name=eponine scaffold_21 . biological_region 375194 375199 0.999 + . logic_name=eponine scaffold_21 ensembl protein_coding_gene 366189 366872 . - . ID=Phyra76969;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000110;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 366189 366872 . - . ID=Phyra76969;Parent=Phyra76969;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 366189 366872 . - 0 ID=Phyra76969;Parent=Phyra76969;rank=1 scaffold_21 . exon 366189 366872 . - . ID=Phyra76969.1;Parent=Phyra76969;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 367447 368518 . - . ID=Phyra76970;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000111;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 367447 368518 . - . ID=Phyra76970;Parent=Phyra76970;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 367447 368244 . - 0 ID=Phyra76970;Parent=Phyra76970;rank=2 scaffold_21 . exon 367447 368244 . - . ID=Phyra76970.2;Parent=Phyra76970;constitutive=1;rank=2 scaffold_21 . CDS 368312 368518 . - 0 ID=Phyra76970;Parent=Phyra76970;rank=1 scaffold_21 . exon 368312 368518 . - . ID=Phyra76970.1;Parent=Phyra76970;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 368786 369872 . + . ID=Phyra76971;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000112;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 368786 369872 . + . ID=Phyra76971;Parent=Phyra76971;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 368786 369805 . + 0 ID=Phyra76971;Parent=Phyra76971;rank=1 scaffold_21 . exon 368786 369805 . + . ID=Phyra76971.1;Parent=Phyra76971;constitutive=1;rank=1 scaffold_21 . CDS 369855 369872 . + 0 ID=Phyra76971;Parent=Phyra76971;rank=2 scaffold_21 . exon 369855 369872 . + . ID=Phyra76971.2;Parent=Phyra76971;constitutive=1;rank=2 scaffold_21 ensembl protein_coding_gene 370267 372165 . - . ID=Phyra76972;biotype=protein_coding;description=Cell 5A endo-1%2C4-betaglucanase [Source:UniProtKB/TrEMBL%3BAcc:A1YT25];external_name=EGL-V.6;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 370267 372165 . - . ID=Phyra76972;Parent=Phyra76972;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 370267 372165 . - 0 ID=Phyra76972;Parent=Phyra76972;rank=1 scaffold_21 . exon 370267 372165 . - . ID=Phyra76972.1;Parent=Phyra76972;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 373476 376119 . - . ID=Phyra94661;biotype=protein_coding;external_name=C_scaffold_21000022;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 373476 376119 . - . ID=Phyra94661;Parent=Phyra94661;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 373476 373514 . - 0 ID=Phyra94661;Parent=Phyra94661;rank=4 scaffold_21 . exon 373476 373514 . - . ID=Phyra94661.4;Parent=Phyra94661;constitutive=1;rank=4 scaffold_21 . CDS 373538 373979 . - 0 ID=Phyra94661;Parent=Phyra94661;rank=3 scaffold_21 . exon 373538 373979 . - . ID=Phyra94661.3;Parent=Phyra94661;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . CDS 374090 374305 . - 0 ID=Phyra94661;Parent=Phyra94661;rank=2 scaffold_21 . exon 374090 374305 . - . ID=Phyra94661.2;Parent=Phyra94661;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_21 . CDS 374330 376119 . - 0 ID=Phyra94661;Parent=Phyra94661;rank=1 scaffold_21 . exon 374330 376119 . - . ID=Phyra94661.1;Parent=Phyra94661;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . repeat_region 380816 383512 . ? . description=dust scaffold_21 ensembl protein_coding_gene 378944 379977 . + . ID=Phyra76974;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000115;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 378944 379977 . + . ID=Phyra76974;Parent=Phyra76974;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 378944 379634 . + 0 ID=Phyra76974;Parent=Phyra76974;rank=1 scaffold_21 . exon 378944 379634 . + . ID=Phyra76974.1;Parent=Phyra76974;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 379697 379977 . + 0 ID=Phyra76974;Parent=Phyra76974;rank=2 scaffold_21 . exon 379697 379977 . + . ID=Phyra76974.2;Parent=Phyra76974;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 ensembl protein_coding_gene 384673 386694 . - . ID=Phyra76975;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000116;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 384673 386694 . - . ID=Phyra76975;Parent=Phyra76975;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 384673 386694 . - 0 ID=Phyra76975;Parent=Phyra76975;rank=1 scaffold_21 . exon 384673 386694 . - . ID=Phyra76975.1;Parent=Phyra76975;constitutive=1;rank=1 scaffold_21 . biological_region 388144 388146 0.999 + . logic_name=eponine scaffold_21 . biological_region 392765 392765 0.999 - . logic_name=eponine scaffold_21 . biological_region 393655 393660 0.999 + . logic_name=eponine scaffold_21 . repeat_region 394342 394388 . ? . description=trf scaffold_21 . repeat_region 394347 394387 . ? . description=trf scaffold_21 ensembl protein_coding_gene 388045 390066 . - . ID=Phyra76976;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000117;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 388045 390066 . - . ID=Phyra76976;Parent=Phyra76976;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 388045 390066 . - 0 ID=Phyra76976;Parent=Phyra76976;rank=1 scaffold_21 . exon 388045 390066 . - . ID=Phyra76976.1;Parent=Phyra76976;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 390302 391986 . + . ID=Phyra76977;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000118;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 390302 391986 . + . ID=Phyra76977;Parent=Phyra76977;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 390302 390390 . + 0 ID=Phyra76977;Parent=Phyra76977;rank=1 scaffold_21 . exon 390302 390390 . + . ID=Phyra76977.1;Parent=Phyra76977;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 390462 390535 . + 0 ID=Phyra76977;Parent=Phyra76977;rank=2 scaffold_21 . exon 390462 390535 . + . ID=Phyra76977.2;Parent=Phyra76977;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 390610 391101 . + 0 ID=Phyra76977;Parent=Phyra76977;rank=3 scaffold_21 . exon 390610 391101 . + . ID=Phyra76977.3;Parent=Phyra76977;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 391172 391233 . + 0 ID=Phyra76977;Parent=Phyra76977;rank=4 scaffold_21 . exon 391172 391233 . + . ID=Phyra76977.4;Parent=Phyra76977;constitutive=1;ensembl_phase=1;rank=4 scaffold_21 . CDS 391317 391628 . + 0 ID=Phyra76977;Parent=Phyra76977;rank=5 scaffold_21 . exon 391317 391628 . + . ID=Phyra76977.5;Parent=Phyra76977;constitutive=1;rank=5 scaffold_21 . CDS 391708 391986 . + 0 ID=Phyra76977;Parent=Phyra76977;rank=6 scaffold_21 . exon 391708 391986 . + . ID=Phyra76977.6;Parent=Phyra76977;constitutive=1;rank=6 scaffold_21 ensembl protein_coding_gene 392268 393295 . + . ID=Phyra76978;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000119;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 392268 393295 . + . ID=Phyra76978;Parent=Phyra76978;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 392268 392492 . + 0 ID=Phyra76978;Parent=Phyra76978;rank=1 scaffold_21 . exon 392268 392492 . + . ID=Phyra76978.1;Parent=Phyra76978;constitutive=1;rank=1 scaffold_21 . CDS 392571 393008 . + 0 ID=Phyra76978;Parent=Phyra76978;rank=2 scaffold_21 . exon 392571 393008 . + . ID=Phyra76978.2;Parent=Phyra76978;constitutive=1;rank=2 scaffold_21 . CDS 393074 393295 . + 0 ID=Phyra76978;Parent=Phyra76978;rank=3 scaffold_21 . exon 393074 393295 . + . ID=Phyra76978.3;Parent=Phyra76978;constitutive=1;rank=3 scaffold_21 ensembl protein_coding_gene 393426 394109 . - . ID=Phyra76979;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000120;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 393426 394109 . - . ID=Phyra76979;Parent=Phyra76979;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 393426 393526 . - 0 ID=Phyra76979;Parent=Phyra76979;rank=2 scaffold_21 . exon 393426 393526 . - . ID=Phyra76979.2;Parent=Phyra76979;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 393593 394109 . - 0 ID=Phyra76979;Parent=Phyra76979;rank=1 scaffold_21 . exon 393593 394109 . - . ID=Phyra76979.1;Parent=Phyra76979;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 394559 395302 . + . ID=Phyra76980;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000121;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 394559 395302 . + . ID=Phyra76980;Parent=Phyra76980;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 394559 394561 . + 0 ID=Phyra76980;Parent=Phyra76980;rank=1 scaffold_21 . exon 394559 394561 . + . ID=Phyra76980.1;Parent=Phyra76980;constitutive=1;rank=1 scaffold_21 . CDS 394645 394956 . + 0 ID=Phyra76980;Parent=Phyra76980;rank=2 scaffold_21 . exon 394645 394956 . + . ID=Phyra76980.2;Parent=Phyra76980;constitutive=1;rank=2 scaffold_21 . CDS 395036 395302 . + 0 ID=Phyra76980;Parent=Phyra76980;rank=3 scaffold_21 . exon 395036 395302 . + . ID=Phyra76980.3;Parent=Phyra76980;constitutive=1;rank=3 scaffold_21 . repeat_region 397155 397202 . ? . description=dust scaffold_21 . repeat_region 397309 397367 . ? . description=dust scaffold_21 . repeat_region 397665 397718 . ? . description=dust scaffold_21 . repeat_region 399621 399629 . ? . description=dust scaffold_21 . repeat_region 405192 405202 . ? . description=dust scaffold_21 . repeat_region 405370 405380 . ? . description=dust scaffold_21 ensembl protein_coding_gene 395597 396624 . + . ID=Phyra76981;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000122;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 395597 396624 . + . ID=Phyra76981;Parent=Phyra76981;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 395597 395821 . + 0 ID=Phyra76981;Parent=Phyra76981;rank=1 scaffold_21 . exon 395597 395821 . + . ID=Phyra76981.1;Parent=Phyra76981;constitutive=1;rank=1 scaffold_21 . CDS 395900 396337 . + 0 ID=Phyra76981;Parent=Phyra76981;rank=2 scaffold_21 . exon 395900 396337 . + . ID=Phyra76981.2;Parent=Phyra76981;constitutive=1;rank=2 scaffold_21 . CDS 396403 396624 . + 0 ID=Phyra76981;Parent=Phyra76981;rank=3 scaffold_21 . exon 396403 396624 . + . ID=Phyra76981.3;Parent=Phyra76981;constitutive=1;rank=3 scaffold_21 ensembl protein_coding_gene 396755 399147 . - . ID=Phyra76982;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000123;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 396755 399147 . - . ID=Phyra76982;Parent=Phyra76982;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 396755 396855 . - 0 ID=Phyra76982;Parent=Phyra76982;rank=3 scaffold_21 . exon 396755 396855 . - . ID=Phyra76982.3;Parent=Phyra76982;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 396917 398433 . - 0 ID=Phyra76982;Parent=Phyra76982;rank=2 scaffold_21 . exon 396917 398433 . - . ID=Phyra76982.2;Parent=Phyra76982;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 398501 399147 . - 0 ID=Phyra76982;Parent=Phyra76982;rank=1 scaffold_21 . exon 398501 399147 . - . ID=Phyra76982.1;Parent=Phyra76982;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . biological_region 405802 405806 0.999 - . logic_name=eponine scaffold_21 . biological_region 406157 406159 0.999 + . logic_name=eponine scaffold_21 . biological_region 408986 408989 0.999 + . logic_name=eponine scaffold_21 . biological_region 409036 409037 0.999 - . logic_name=eponine scaffold_21 . biological_region 412163 412165 0.999 - . logic_name=eponine scaffold_21 . biological_region 412824 412828 0.999 + . logic_name=eponine scaffold_21 . biological_region 412938 412945 0.999 - . logic_name=eponine scaffold_21 . biological_region 412959 412959 0.999 - . logic_name=eponine scaffold_21 . biological_region 413315 413320 0.999 - . logic_name=eponine scaffold_21 . biological_region 413370 413374 0.999 + . logic_name=eponine scaffold_21 . biological_region 413482 413485 0.999 - . logic_name=eponine scaffold_21 . biological_region 413714 413715 0.999 + . logic_name=eponine scaffold_21 . biological_region 413912 413920 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 405508 406866 . - . ID=Phyra76983;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000124;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 405508 406866 . - . ID=Phyra76983;Parent=Phyra76983;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 405508 406866 . - 0 ID=Phyra76983;Parent=Phyra76983;rank=1 scaffold_21 . exon 405508 406866 . - . ID=Phyra76983.1;Parent=Phyra76983;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 408305 410795 . + . ID=Phyra76984;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000125;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 408305 410795 . + . ID=Phyra76984;Parent=Phyra76984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 408305 408382 . + 0 ID=Phyra76984;Parent=Phyra76984;rank=1 scaffold_21 . exon 408305 408382 . + . ID=Phyra76984.1;Parent=Phyra76984;constitutive=1;rank=1 scaffold_21 . CDS 408441 410795 . + 0 ID=Phyra76984;Parent=Phyra76984;rank=2 scaffold_21 . exon 408441 410795 . + . ID=Phyra76984.2;Parent=Phyra76984;constitutive=1;rank=2 scaffold_21 ensembl protein_coding_gene 412641 414818 . + . ID=Phyra76985;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000126;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 412641 414818 . + . ID=Phyra76985;Parent=Phyra76985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 412641 414818 . + 0 ID=Phyra76985;Parent=Phyra76985;rank=1 scaffold_21 . exon 412641 414818 . + . ID=Phyra76985.1;Parent=Phyra76985;constitutive=1;rank=1 scaffold_21 . repeat_region 417898 417906 . ? . description=dust scaffold_21 . repeat_region 420494 420503 . ? . description=dust scaffold_21 ensembl protein_coding_gene 415479 415766 . - . ID=Phyra44430;biotype=protein_coding;external_name=gwEuk.21.93.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 415479 415766 . - . ID=Phyra44430;Parent=Phyra44430;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 415479 415766 . - 0 ID=Phyra44430;Parent=Phyra44430;rank=1 scaffold_21 . exon 415479 415766 . - . ID=Phyra44430.1;Parent=Phyra44430;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 416361 417512 . + . ID=Phyra76987;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000128;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 416361 417512 . + . ID=Phyra76987;Parent=Phyra76987;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 416361 417512 . + 0 ID=Phyra76987;Parent=Phyra76987;rank=1 scaffold_21 . exon 416361 417512 . + . ID=Phyra76987.1;Parent=Phyra76987;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 418930 419886 . - . ID=Phyra76988;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000129;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 418930 419886 . - . ID=Phyra76988;Parent=Phyra76988;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 418930 419886 . - 0 ID=Phyra76988;Parent=Phyra76988;rank=1 scaffold_21 . exon 418930 419886 . - . ID=Phyra76988.1;Parent=Phyra76988;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 420810 422360 . - . ID=Phyra76989;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000130;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 420810 422360 . - . ID=Phyra76989;Parent=Phyra76989;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 420810 421118 . - 0 ID=Phyra76989;Parent=Phyra76989;rank=3 scaffold_21 . exon 420810 421118 . - . ID=Phyra76989.3;Parent=Phyra76989;constitutive=1;rank=3 scaffold_21 . CDS 421229 421569 . - 0 ID=Phyra76989;Parent=Phyra76989;rank=2 scaffold_21 . exon 421229 421569 . - . ID=Phyra76989.2;Parent=Phyra76989;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 421739 422360 . - 0 ID=Phyra76989;Parent=Phyra76989;rank=1 scaffold_21 . exon 421739 422360 . - . ID=Phyra76989.1;Parent=Phyra76989;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 424133 425001 . + . ID=Phyra76990;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000131;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 424133 425001 . + . ID=Phyra76990;Parent=Phyra76990;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 424133 424588 . + 0 ID=Phyra76990;Parent=Phyra76990;rank=1 scaffold_21 . exon 424133 424588 . + . ID=Phyra76990.1;Parent=Phyra76990;constitutive=1;rank=1 scaffold_21 . CDS 424659 424826 . + 0 ID=Phyra76990;Parent=Phyra76990;rank=2 scaffold_21 . exon 424659 424826 . + . ID=Phyra76990.2;Parent=Phyra76990;constitutive=1;rank=2 scaffold_21 . CDS 424897 425001 . + 0 ID=Phyra76990;Parent=Phyra76990;rank=3 scaffold_21 . exon 424897 425001 . + . ID=Phyra76990.3;Parent=Phyra76990;constitutive=1;rank=3 scaffold_21 . biological_region 425981 425985 0.999 + . logic_name=eponine scaffold_21 . biological_region 426083 426085 0.999 - . logic_name=eponine scaffold_21 . biological_region 426205 426211 0.999 - . logic_name=eponine scaffold_21 . biological_region 426546 426550 0.999 + . logic_name=eponine scaffold_21 . biological_region 426648 426654 0.999 - . logic_name=eponine scaffold_21 . biological_region 429550 429553 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 425398 426660 . - . ID=Phyra71474;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_21000015;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 425398 426660 . - . ID=Phyra71474;Parent=Phyra71474;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 425398 426564 . - 0 ID=Phyra71474;Parent=Phyra71474;rank=2 scaffold_21 . exon 425398 426564 . - . ID=Phyra71474.2;Parent=Phyra71474;constitutive=1;rank=2 scaffold_21 . CDS 426592 426660 . - 0 ID=Phyra71474;Parent=Phyra71474;rank=1 scaffold_21 . exon 426592 426660 . - . ID=Phyra71474.1;Parent=Phyra71474;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 426965 427363 . - . ID=Phyra76992;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000133;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 426965 427363 . - . ID=Phyra76992;Parent=Phyra76992;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 426965 427363 . - 0 ID=Phyra76992;Parent=Phyra76992;rank=1 scaffold_21 . exon 426965 427363 . - . ID=Phyra76992.1;Parent=Phyra76992;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 427674 429806 . - . ID=Phyra76993;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000134;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 427674 429806 . - . ID=Phyra76993;Parent=Phyra76993;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 427674 429806 . - 0 ID=Phyra76993;Parent=Phyra76993;rank=1 scaffold_21 . exon 427674 429806 . - . ID=Phyra76993.1;Parent=Phyra76993;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 430501 430854 . + . ID=Phyra76994;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000135;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 430501 430854 . + . ID=Phyra76994;Parent=Phyra76994;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 430501 430854 . + 0 ID=Phyra76994;Parent=Phyra76994;rank=1 scaffold_21 . exon 430501 430854 . + . ID=Phyra76994.1;Parent=Phyra76994;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 431281 431631 . + . ID=Phyra76995;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000136;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 431281 431631 . + . ID=Phyra76995;Parent=Phyra76995;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 431281 431631 . + 0 ID=Phyra76995;Parent=Phyra76995;rank=1 scaffold_21 . exon 431281 431631 . + . ID=Phyra76995.1;Parent=Phyra76995;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 432059 432412 . + . ID=Phyra76996;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000137;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 432059 432412 . + . ID=Phyra76996;Parent=Phyra76996;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 432059 432412 . + 0 ID=Phyra76996;Parent=Phyra76996;rank=1 scaffold_21 . exon 432059 432412 . + . ID=Phyra76996.1;Parent=Phyra76996;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 432568 435982 . - . ID=Phyra76997;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000138;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 432568 435982 . - . ID=Phyra76997;Parent=Phyra76997;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 432568 432928 . - 0 ID=Phyra76997;Parent=Phyra76997;rank=5 scaffold_21 . exon 432568 432928 . - . ID=Phyra76997.5;Parent=Phyra76997;constitutive=1;ensembl_phase=2;rank=5 scaffold_21 . CDS 432988 433067 . - 0 ID=Phyra76997;Parent=Phyra76997;rank=4 scaffold_21 . exon 432988 433067 . - . ID=Phyra76997.4;Parent=Phyra76997;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_21 . CDS 433133 433897 . - 0 ID=Phyra76997;Parent=Phyra76997;rank=3 scaffold_21 . exon 433133 433897 . - . ID=Phyra76997.3;Parent=Phyra76997;constitutive=1;rank=3 scaffold_21 . CDS 433943 434100 . - 0 ID=Phyra76997;Parent=Phyra76997;rank=2 scaffold_21 . exon 433943 434100 . - . ID=Phyra76997.2;Parent=Phyra76997;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 434251 435982 . - 0 ID=Phyra76997;Parent=Phyra76997;rank=1 scaffold_21 . exon 434251 435982 . - . ID=Phyra76997.1;Parent=Phyra76997;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . repeat_region 438376 438384 . ? . description=dust scaffold_21 . repeat_region 439391 439449 . ? . description=trf scaffold_21 . repeat_region 439397 439487 . ? . description=trf scaffold_21 . repeat_region 440147 450072 . ? . description=dust scaffold_21 ensembl protein_coding_gene 436960 437637 . + . ID=Phyra44445;biotype=protein_coding;external_name=gwEuk.21.108.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 436960 437637 . + . ID=Phyra44445;Parent=Phyra44445;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 436960 437637 . + 0 ID=Phyra44445;Parent=Phyra44445;rank=1 scaffold_21 . exon 436960 437637 . + . ID=Phyra44445.1;Parent=Phyra44445;constitutive=1;rank=1 scaffold_21 . biological_region 451710 451713 0.999 + . logic_name=eponine scaffold_21 . biological_region 452108 452108 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 451407 451949 . + . ID=Phyra44446;biotype=protein_coding;external_name=gwEuk.21.109.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 451407 451949 . + . ID=Phyra44446;Parent=Phyra44446;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 451407 451949 . + 0 ID=Phyra44446;Parent=Phyra44446;rank=1 scaffold_21 . exon 451407 451949 . + . ID=Phyra44446.1;Parent=Phyra44446;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 452938 454635 . - . ID=Phyra77000;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000141;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 452938 454635 . - . ID=Phyra77000;Parent=Phyra77000;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 452938 454635 . - 0 ID=Phyra77000;Parent=Phyra77000;rank=1 scaffold_21 . exon 452938 454635 . - . ID=Phyra77000.1;Parent=Phyra77000;constitutive=1;rank=1 scaffold_21 . repeat_region 462540 462694 . ? . description=trf scaffold_21 . repeat_region 462540 462707 . ? . description=trf scaffold_21 . repeat_region 462540 462711 . ? . description=trf scaffold_21 . repeat_region 462793 462922 . ? . description=trf scaffold_21 . repeat_region 462813 462923 . ? . description=trf scaffold_21 . repeat_region 462969 463156 . ? . description=trf scaffold_21 . repeat_region 463008 463108 . ? . description=trf scaffold_21 . repeat_region 463047 463161 . ? . description=trf scaffold_21 . repeat_region 463337 463413 . ? . description=trf scaffold_21 . repeat_region 463469 463505 . ? . description=trf scaffold_21 . repeat_region 463565 463634 . ? . description=trf scaffold_21 . repeat_region 463838 463979 . ? . description=trf scaffold_21 ensembl protein_coding_gene 455711 457254 . - . ID=Phyra77001;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000142;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 455711 457254 . - . ID=Phyra77001;Parent=Phyra77001;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 455711 456769 . - 0 ID=Phyra77001;Parent=Phyra77001;rank=5 scaffold_21 . exon 455711 456769 . - . ID=Phyra77001.5;Parent=Phyra77001;constitutive=1;rank=5 scaffold_21 . CDS 456835 456872 . - 0 ID=Phyra77001;Parent=Phyra77001;rank=4 scaffold_21 . exon 456835 456872 . - . ID=Phyra77001.4;Parent=Phyra77001;constitutive=1;ensembl_phase=1;rank=4 scaffold_21 . CDS 456933 456990 . - 0 ID=Phyra77001;Parent=Phyra77001;rank=3 scaffold_21 . exon 456933 456990 . - . ID=Phyra77001.3;Parent=Phyra77001;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_21 . CDS 457067 457111 . - 0 ID=Phyra77001;Parent=Phyra77001;rank=2 scaffold_21 . exon 457067 457111 . - . ID=Phyra77001.2;Parent=Phyra77001;constitutive=1;rank=2 scaffold_21 . CDS 457231 457254 . - 0 ID=Phyra77001;Parent=Phyra77001;rank=1 scaffold_21 . exon 457231 457254 . - . ID=Phyra77001.1;Parent=Phyra77001;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 457600 460923 . - . ID=Phyra77002;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000143;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 457600 460923 . - . ID=Phyra77002;Parent=Phyra77002;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 457600 460923 . - 0 ID=Phyra77002;Parent=Phyra77002;rank=1 scaffold_21 . exon 457600 460923 . - . ID=Phyra77002.1;Parent=Phyra77002;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 461264 461769 . + . ID=Phyra77003;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000144;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 461264 461769 . + . ID=Phyra77003;Parent=Phyra77003;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 461264 461612 . + 0 ID=Phyra77003;Parent=Phyra77003;rank=1 scaffold_21 . exon 461264 461612 . + . ID=Phyra77003.1;Parent=Phyra77003;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 461681 461769 . + 0 ID=Phyra77003;Parent=Phyra77003;rank=2 scaffold_21 . exon 461681 461769 . + . ID=Phyra77003.2;Parent=Phyra77003;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 ensembl protein_coding_gene 462143 464182 . - . ID=Phyra77004;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000145;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 462143 464182 . - . ID=Phyra77004;Parent=Phyra77004;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 462143 464182 . - 0 ID=Phyra77004;Parent=Phyra77004;rank=1 scaffold_21 . exon 462143 464182 . - . ID=Phyra77004.1;Parent=Phyra77004;constitutive=1;rank=1 scaffold_21 . biological_region 464834 464837 0.999 + . logic_name=eponine scaffold_21 . biological_region 464858 464862 0.999 + . logic_name=eponine scaffold_21 . biological_region 464882 464889 0.999 - . logic_name=eponine scaffold_21 . biological_region 464954 464957 0.999 - . logic_name=eponine scaffold_21 . biological_region 468779 468780 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 473234 473512 . + . ID=Phyra71475;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_21000016;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 473234 473512 . + . ID=Phyra71475;Parent=Phyra71475;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 473234 473512 . + 0 ID=Phyra71475;Parent=Phyra71475;rank=1 scaffold_21 . exon 473234 473512 . + . ID=Phyra71475.1;Parent=Phyra71475;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 467748 468119 . - . ID=Phyra77005;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000146;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 467748 468119 . - . ID=Phyra77005;Parent=Phyra77005;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 467748 468119 . - 0 ID=Phyra77005;Parent=Phyra77005;rank=1 scaffold_21 . exon 467748 468119 . - . ID=Phyra77005.1;Parent=Phyra77005;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 471509 473094 . - . ID=Phyra77006;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000147;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 471509 473094 . - . ID=Phyra77006;Parent=Phyra77006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 471509 471554 . - 0 ID=Phyra77006;Parent=Phyra77006;rank=3 scaffold_21 . exon 471509 471554 . - . ID=Phyra77006.3;Parent=Phyra77006;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . CDS 471597 472216 . - 0 ID=Phyra77006;Parent=Phyra77006;rank=2 scaffold_21 . exon 471597 472216 . - . ID=Phyra77006.2;Parent=Phyra77006;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_21 . CDS 472291 473094 . - 0 ID=Phyra77006;Parent=Phyra77006;rank=1 scaffold_21 . exon 472291 473094 . - . ID=Phyra77006.1;Parent=Phyra77006;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 469744 471359 . + . ID=Phyra94664;biotype=protein_coding;external_name=C_scaffold_21000025;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 469744 471359 . + . ID=Phyra94664;Parent=Phyra94664;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 469744 469966 . + 0 ID=Phyra94664;Parent=Phyra94664;rank=1 scaffold_21 . exon 469744 469966 . + . ID=Phyra94664.1;Parent=Phyra94664;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 470171 470319 . + 0 ID=Phyra94664;Parent=Phyra94664;rank=2 scaffold_21 . exon 470171 470319 . + . ID=Phyra94664.2;Parent=Phyra94664;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 470402 470599 . + 0 ID=Phyra94664;Parent=Phyra94664;rank=3 scaffold_21 . exon 470402 470599 . + . ID=Phyra94664.3;Parent=Phyra94664;constitutive=1;rank=3 scaffold_21 . CDS 470670 470798 . + 0 ID=Phyra94664;Parent=Phyra94664;rank=4 scaffold_21 . exon 470670 470798 . + . ID=Phyra94664.4;Parent=Phyra94664;constitutive=1;rank=4 scaffold_21 . CDS 470820 470999 . + 0 ID=Phyra94664;Parent=Phyra94664;rank=5 scaffold_21 . exon 470820 470999 . + . ID=Phyra94664.5;Parent=Phyra94664;constitutive=1;rank=5 scaffold_21 . CDS 471071 471178 . + 0 ID=Phyra94664;Parent=Phyra94664;rank=6 scaffold_21 . exon 471071 471178 . + . ID=Phyra94664.6;Parent=Phyra94664;constitutive=1;rank=6 scaffold_21 . CDS 471249 471359 . + 0 ID=Phyra94664;Parent=Phyra94664;rank=7 scaffold_21 . exon 471249 471359 . + . ID=Phyra94664.7;Parent=Phyra94664;constitutive=1;rank=7 scaffold_21 . repeat_region 475746 475766 . ? . description=dust scaffold_21 . repeat_region 478445 478452 . ? . description=dust scaffold_21 ensembl protein_coding_gene 482181 485142 . - . ID=Phyra77008;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000149;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 482181 485142 . - . ID=Phyra77008;Parent=Phyra77008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 482181 482776 . - 0 ID=Phyra77008;Parent=Phyra77008;rank=5 scaffold_21 . exon 482181 482776 . - . ID=Phyra77008.5;Parent=Phyra77008;constitutive=1;ensembl_phase=1;rank=5 scaffold_21 . CDS 482827 484005 . - 0 ID=Phyra77008;Parent=Phyra77008;rank=4 scaffold_21 . exon 482827 484005 . - . ID=Phyra77008.4;Parent=Phyra77008;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_21 . CDS 484081 484194 . - 0 ID=Phyra77008;Parent=Phyra77008;rank=3 scaffold_21 . exon 484081 484194 . - . ID=Phyra77008.3;Parent=Phyra77008;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 484254 484434 . - 0 ID=Phyra77008;Parent=Phyra77008;rank=2 scaffold_21 . exon 484254 484434 . - . ID=Phyra77008.2;Parent=Phyra77008;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_21 . CDS 484492 485142 . - 0 ID=Phyra77008;Parent=Phyra77008;rank=1 scaffold_21 . exon 484492 485142 . - . ID=Phyra77008.1;Parent=Phyra77008;constitutive=1;rank=1 scaffold_21 . biological_region 484652 484653 0.999 - . logic_name=eponine scaffold_21 . biological_region 484707 484710 0.999 - . logic_name=eponine scaffold_21 . biological_region 484738 484738 0.999 + . logic_name=eponine scaffold_21 . biological_region 484761 484766 0.999 + . logic_name=eponine scaffold_21 . biological_region 484945 484953 0.999 + . logic_name=eponine scaffold_21 . biological_region 485289 485294 0.999 + . logic_name=eponine scaffold_21 . biological_region 485380 485383 0.999 - . logic_name=eponine scaffold_21 . biological_region 485392 485393 0.999 - . logic_name=eponine scaffold_21 . biological_region 485409 485413 0.999 - . logic_name=eponine scaffold_21 . biological_region 485464 485467 0.999 + . logic_name=eponine scaffold_21 . biological_region 486909 486913 0.999 - . logic_name=eponine scaffold_21 . biological_region 486943 486943 0.999 + . logic_name=eponine scaffold_21 . repeat_region 487090 487131 . ? . description=trf scaffold_21 . biological_region 487170 487176 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 485310 486333 . + . ID=Phyra44460;biotype=protein_coding;external_name=gwEuk.21.123.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 485310 486333 . + . ID=Phyra44460;Parent=Phyra44460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 485310 486202 . + 0 ID=Phyra44460;Parent=Phyra44460;rank=1 scaffold_21 . exon 485310 486202 . + . ID=Phyra44460.1;Parent=Phyra44460;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 486270 486333 . + 0 ID=Phyra44460;Parent=Phyra44460;rank=2 scaffold_21 . exon 486270 486333 . + . ID=Phyra44460.2;Parent=Phyra44460;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 ensembl protein_coding_gene 486812 489433 . - . ID=Phyra77010;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000151;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 486812 489433 . - . ID=Phyra77010;Parent=Phyra77010;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 486812 489433 . - 0 ID=Phyra77010;Parent=Phyra77010;rank=1 scaffold_21 . exon 486812 489433 . - . ID=Phyra77010.1;Parent=Phyra77010;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 490249 493523 . - . ID=Phyra77011;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000152;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 490249 493523 . - . ID=Phyra77011;Parent=Phyra77011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 490249 490455 . - 0 ID=Phyra77011;Parent=Phyra77011;rank=4 scaffold_21 . exon 490249 490455 . - . ID=Phyra77011.4;Parent=Phyra77011;constitutive=1;rank=4 scaffold_21 . CDS 490521 491767 . - 0 ID=Phyra77011;Parent=Phyra77011;rank=3 scaffold_21 . exon 490521 491767 . - . ID=Phyra77011.3;Parent=Phyra77011;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 492107 492232 . - 0 ID=Phyra77011;Parent=Phyra77011;rank=2 scaffold_21 . exon 492107 492232 . - . ID=Phyra77011.2;Parent=Phyra77011;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 492383 493523 . - 0 ID=Phyra77011;Parent=Phyra77011;rank=1 scaffold_21 . exon 492383 493523 . - . ID=Phyra77011.1;Parent=Phyra77011;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . repeat_region 499070 499088 . ? . description=dust scaffold_21 ensembl protein_coding_gene 494928 496199 . + . ID=Phyra77012;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000153;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 494928 496199 . + . ID=Phyra77012;Parent=Phyra77012;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 494928 496199 . + 0 ID=Phyra77012;Parent=Phyra77012;rank=1 scaffold_21 . exon 494928 496199 . + . ID=Phyra77012.1;Parent=Phyra77012;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 496387 497739 . - . ID=Phyra77013;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000154;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 496387 497739 . - . ID=Phyra77013;Parent=Phyra77013;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 496387 497739 . - 0 ID=Phyra77013;Parent=Phyra77013;rank=1 scaffold_21 . exon 496387 497739 . - . ID=Phyra77013.1;Parent=Phyra77013;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 501858 502485 . - . ID=Phyra77014;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000155;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 501858 502485 . - . ID=Phyra77014;Parent=Phyra77014;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 501858 501902 . - 0 ID=Phyra77014;Parent=Phyra77014;rank=2 scaffold_21 . exon 501858 501902 . - . ID=Phyra77014.2;Parent=Phyra77014;constitutive=1;rank=2 scaffold_21 . CDS 501979 502485 . - 0 ID=Phyra77014;Parent=Phyra77014;rank=1 scaffold_21 . exon 501979 502485 . - . ID=Phyra77014.1;Parent=Phyra77014;constitutive=1;rank=1 scaffold_21 . biological_region 504872 504881 0.999 + . logic_name=eponine scaffold_21 . biological_region 504954 504957 0.999 - . logic_name=eponine scaffold_21 . biological_region 509813 509820 0.999 + . logic_name=eponine scaffold_21 . biological_region 511610 511615 0.999 + . logic_name=eponine scaffold_21 . biological_region 511641 511646 0.999 - . logic_name=eponine scaffold_21 . biological_region 512153 512153 0.999 + . logic_name=eponine scaffold_21 . biological_region 512433 512433 0.999 - . logic_name=eponine scaffold_21 . biological_region 512607 512610 0.999 + . logic_name=eponine scaffold_21 ensembl protein_coding_gene 510126 510842 . + . ID=Phyra71477;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_21000018;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 510126 510842 . + . ID=Phyra71477;Parent=Phyra71477;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 510126 510842 . + 0 ID=Phyra71477;Parent=Phyra71477;rank=1 scaffold_21 . exon 510126 510842 . + . ID=Phyra71477.1;Parent=Phyra71477;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 511397 512870 . + . ID=Phyra77016;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000157;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 511397 512870 . + . ID=Phyra77016;Parent=Phyra77016;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 511397 512062 . + 0 ID=Phyra77016;Parent=Phyra77016;rank=1 scaffold_21 . exon 511397 512062 . + . ID=Phyra77016.1;Parent=Phyra77016;constitutive=1;rank=1 scaffold_21 . CDS 512154 512870 . + 0 ID=Phyra77016;Parent=Phyra77016;rank=2 scaffold_21 . exon 512154 512870 . + . ID=Phyra77016.2;Parent=Phyra77016;constitutive=1;rank=2 scaffold_21 ensembl protein_coding_gene 512945 513694 . - . ID=Phyra77017;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000158;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 512945 513694 . - . ID=Phyra77017;Parent=Phyra77017;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 512945 513694 . - 0 ID=Phyra77017;Parent=Phyra77017;rank=1 scaffold_21 . exon 512945 513694 . - . ID=Phyra77017.1;Parent=Phyra77017;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 514208 517223 . + . ID=Phyra77018;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000159;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 514208 517223 . + . ID=Phyra77018;Parent=Phyra77018;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 514208 514516 . + 0 ID=Phyra77018;Parent=Phyra77018;rank=1 scaffold_21 . exon 514208 514516 . + . ID=Phyra77018.1;Parent=Phyra77018;constitutive=1;rank=1 scaffold_21 . CDS 514575 514790 . + 0 ID=Phyra77018;Parent=Phyra77018;rank=2 scaffold_21 . CDS 514855 514956 . + 0 ID=Phyra77018;Parent=Phyra77018;rank=3 scaffold_21 . CDS 515031 517223 . + 0 ID=Phyra77018;Parent=Phyra77018;rank=4 scaffold_21 ensembl protein_coding_gene 523880 524419 . - . ID=Phyra44485;biotype=protein_coding;external_name=gwEuk.21.148.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 523880 524419 . - . ID=Phyra44485;Parent=Phyra44485;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 523880 524419 . - 0 ID=Phyra44485;Parent=Phyra44485;rank=1 scaffold_21 . exon 523880 524419 . - . ID=Phyra44485.1;Parent=Phyra44485;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 522687 523343 . - . ID=Phyra44487;biotype=protein_coding;external_name=gwEuk.21.150.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 522687 523343 . - . ID=Phyra44487;Parent=Phyra44487;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 522687 523343 . - 0 ID=Phyra44487;Parent=Phyra44487;rank=1 scaffold_21 . exon 522687 523343 . - . ID=Phyra44487.1;Parent=Phyra44487;constitutive=1;rank=1 scaffold_21 . exon 514575 514790 . + . ID=Phyra77018.2;Parent=Phyra77018;constitutive=1;rank=2 scaffold_21 . exon 514855 514956 . + . ID=Phyra77018.3;Parent=Phyra77018;constitutive=1;rank=3 scaffold_21 . exon 515031 517223 . + . ID=Phyra77018.4;Parent=Phyra77018;constitutive=1;rank=4 scaffold_21 ensembl protein_coding_gene 517489 520656 . - . ID=Phyra77019;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000160;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 517489 520656 . - . ID=Phyra77019;Parent=Phyra77019;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 517489 520656 . - 0 ID=Phyra77019;Parent=Phyra77019;rank=1 scaffold_21 . exon 517489 520656 . - . ID=Phyra77019.1;Parent=Phyra77019;constitutive=1;rank=1 scaffold_21 . biological_region 525174 525175 0.999 - . logic_name=eponine scaffold_21 . biological_region 526750 526751 0.999 + . logic_name=eponine scaffold_21 . repeat_region 528469 528586 . ? . description=trf scaffold_21 . repeat_region 528585 528793 . ? . description=trf scaffold_21 . repeat_region 529362 529370 . ? . description=dust scaffold_21 . biological_region 529389 529394 0.999 - . logic_name=eponine scaffold_21 . biological_region 530913 530916 0.999 + . logic_name=eponine scaffold_21 . repeat_region 531315 531342 . ? . description=trf scaffold_21 . repeat_region 531384 531455 . ? . description=trf scaffold_21 . biological_region 531789 531794 0.999 + . logic_name=eponine scaffold_21 . biological_region 531833 531836 0.999 - . logic_name=eponine scaffold_21 . biological_region 532234 532235 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 524807 525484 . - . ID=Phyra44483;biotype=protein_coding;external_name=gwEuk.21.146.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 524807 525484 . - . ID=Phyra44483;Parent=Phyra44483;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 524807 525484 . - 0 ID=Phyra44483;Parent=Phyra44483;rank=1 scaffold_21 . exon 524807 525484 . - . ID=Phyra44483.1;Parent=Phyra44483;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 528135 529331 . - . ID=Phyra77021;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000162;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 528135 529331 . - . ID=Phyra77021;Parent=Phyra77021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 528135 529331 . - 0 ID=Phyra77021;Parent=Phyra77021;rank=1 scaffold_21 . exon 528135 529331 . - . ID=Phyra77021.1;Parent=Phyra77021;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 530589 532625 . - . ID=Phyra77022;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000163;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 530589 532625 . - . ID=Phyra77022;Parent=Phyra77022;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 530589 532625 . - 0 ID=Phyra77022;Parent=Phyra77022;rank=1 scaffold_21 . exon 530589 532625 . - . ID=Phyra77022.1;Parent=Phyra77022;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 543877 544266 . - . ID=Phyra44498;biotype=protein_coding;external_name=gwEuk.21.161.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 543877 544266 . - . ID=Phyra44498;Parent=Phyra44498;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 543877 544266 . - 0 ID=Phyra44498;Parent=Phyra44498;rank=1 scaffold_21 . exon 543877 544266 . - . ID=Phyra44498.1;Parent=Phyra44498;constitutive=1;rank=1 scaffold_21 . repeat_region 548922 548930 . ? . description=dust scaffold_21 . biological_region 550227 550232 0.999 + . logic_name=eponine scaffold_21 . repeat_region 551928 551940 . ? . description=dust scaffold_21 ensembl protein_coding_gene 545494 545916 . - . ID=Phyra44499;biotype=protein_coding;external_name=gwEuk.21.162.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 545494 545916 . - . ID=Phyra44499;Parent=Phyra44499;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 545494 545916 . - 0 ID=Phyra44499;Parent=Phyra44499;rank=1 scaffold_21 . exon 545494 545916 . - . ID=Phyra44499.1;Parent=Phyra44499;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 547248 548066 . - . ID=Phyra77023;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000164;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 547248 548066 . - . ID=Phyra77023;Parent=Phyra77023;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 547248 548066 . - 0 ID=Phyra77023;Parent=Phyra77023;rank=1 scaffold_21 . exon 547248 548066 . - . ID=Phyra77023.1;Parent=Phyra77023;constitutive=1;rank=1 scaffold_21 . repeat_region 563713 563759 . ? . description=trf scaffold_21 . repeat_region 564191 564208 . ? . description=dust scaffold_21 . repeat_region 569481 569490 . ? . description=dust scaffold_21 . biological_region 570680 570681 0.999 - . logic_name=eponine scaffold_21 . repeat_region 571023 571080 . ? . description=trf scaffold_21 . repeat_region 571385 571408 . ? . description=trf scaffold_21 . biological_region 571958 571960 0.999 - . logic_name=eponine scaffold_21 . repeat_region 572482 574247 . ? . description=dust scaffold_21 ensembl protein_coding_gene 570295 572350 . - . ID=Phyra77024;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000165;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 570295 572350 . - . ID=Phyra77024;Parent=Phyra77024;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 570295 571077 . - 0 ID=Phyra77024;Parent=Phyra77024;rank=2 scaffold_21 . exon 570295 571077 . - . ID=Phyra77024.2;Parent=Phyra77024;constitutive=1;rank=2 scaffold_21 . CDS 571175 572350 . - 0 ID=Phyra77024;Parent=Phyra77024;rank=1 scaffold_21 . exon 571175 572350 . - . ID=Phyra77024.1;Parent=Phyra77024;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 575241 575909 . + . ID=Phyra44512;biotype=protein_coding;external_name=gwEuk.21.175.1;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 575241 575909 . + . ID=Phyra44512;Parent=Phyra44512;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 575241 575909 . + 0 ID=Phyra44512;Parent=Phyra44512;rank=1 scaffold_21 . exon 575241 575909 . + . ID=Phyra44512.1;Parent=Phyra44512;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 576166 577170 . - . ID=Phyra77026;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000167;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 576166 577170 . - . ID=Phyra77026;Parent=Phyra77026;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 576166 577170 . - 0 ID=Phyra77026;Parent=Phyra77026;rank=1 scaffold_21 . exon 576166 577170 . - . ID=Phyra77026.1;Parent=Phyra77026;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 579994 581583 . - . ID=Phyra77027;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000168;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 579994 581583 . - . ID=Phyra77027;Parent=Phyra77027;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 579994 580261 . - 0 ID=Phyra77027;Parent=Phyra77027;rank=2 scaffold_21 . exon 579994 580261 . - . ID=Phyra77027.2;Parent=Phyra77027;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 580319 581583 . - 0 ID=Phyra77027;Parent=Phyra77027;rank=1 scaffold_21 . exon 580319 581583 . - . ID=Phyra77027.1;Parent=Phyra77027;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 581995 582389 . + . ID=Phyra77028;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000169;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 581995 582389 . + . ID=Phyra77028;Parent=Phyra77028;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 581995 582185 . + 0 ID=Phyra77028;Parent=Phyra77028;rank=1 scaffold_21 . exon 581995 582185 . + . ID=Phyra77028.1;Parent=Phyra77028;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 582260 582389 . + 0 ID=Phyra77028;Parent=Phyra77028;rank=2 scaffold_21 . exon 582260 582389 . + . ID=Phyra77028.2;Parent=Phyra77028;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 ensembl protein_coding_gene 582599 583327 . - . ID=Phyra77029;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_21000170;logic_name=jgi_phyra1 scaffold_21 ensembl transcript 582599 583327 . - . ID=Phyra77029;Parent=Phyra77029;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_21 . CDS 582599 583327 . - 0 ID=Phyra77029;Parent=Phyra77029;rank=1 scaffold_21 . exon 582599 583327 . - . ID=Phyra77029.1;Parent=Phyra77029;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_20 1 586225 scaffold_20 . biological_region 315 320 0.999 + . logic_name=eponine scaffold_20 . repeat_region 429 460 . ? . description=trf scaffold_20 . biological_region 1088 1090 0.999 - . logic_name=eponine scaffold_20 . repeat_region 1335 1344 . ? . description=dust scaffold_20 . repeat_region 1376 1403 . ? . description=trf scaffold_20 . repeat_region 1415 1439 . ? . description=trf scaffold_20 . repeat_region 4576 5016 . ? . description=dust scaffold_20 . repeat_region 5762 5769 . ? . description=dust scaffold_20 . repeat_region 7617 7624 . ? . description=dust scaffold_20 . biological_region 8723 8724 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 7635 8117 . - . ID=Phyra71443;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_20000001;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 7635 8117 . - . ID=Phyra71443;Parent=Phyra71443;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 7635 8117 . - 0 ID=Phyra71443;Parent=Phyra71443;rank=1 scaffold_20 . exon 7635 8117 . - . ID=Phyra71443.1;Parent=Phyra71443;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 6 1048 . - . ID=Phyra76712;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000001;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 6 1048 . - . ID=Phyra76712;Parent=Phyra76712;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 6 828 . - 0 ID=Phyra76712;Parent=Phyra76712;rank=2 scaffold_20 . exon 6 828 . - . ID=Phyra76712.2;Parent=Phyra76712;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 912 1048 . - 0 ID=Phyra76712;Parent=Phyra76712;rank=1 scaffold_20 . exon 912 1048 . - . ID=Phyra76712.1;Parent=Phyra76712;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 1500 5539 . + . ID=Phyra76713;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000002;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 1500 5539 . + . ID=Phyra76713;Parent=Phyra76713;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 1500 2313 . + 0 ID=Phyra76713;Parent=Phyra76713;rank=1 scaffold_20 . exon 1500 2313 . + . ID=Phyra76713.1;Parent=Phyra76713;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 2545 2648 . + 0 ID=Phyra76713;Parent=Phyra76713;rank=2 scaffold_20 . exon 2545 2648 . + . ID=Phyra76713.2;Parent=Phyra76713;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 2887 3169 . + 0 ID=Phyra76713;Parent=Phyra76713;rank=3 scaffold_20 . exon 2887 3169 . + . ID=Phyra76713.3;Parent=Phyra76713;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_20 . CDS 3244 3611 . + 0 ID=Phyra76713;Parent=Phyra76713;rank=4 scaffold_20 . exon 3244 3611 . + . ID=Phyra76713.4;Parent=Phyra76713;constitutive=1;ensembl_phase=1;rank=4 scaffold_20 . CDS 3676 4572 . + 0 ID=Phyra76713;Parent=Phyra76713;rank=5 scaffold_20 . exon 3676 4572 . + . ID=Phyra76713.5;Parent=Phyra76713;constitutive=1;rank=5 scaffold_20 . CDS 5100 5222 . + 0 ID=Phyra76713;Parent=Phyra76713;rank=6 scaffold_20 . exon 5100 5222 . + . ID=Phyra76713.6;Parent=Phyra76713;constitutive=1;rank=6 scaffold_20 . CDS 5292 5362 . + 0 ID=Phyra76713;Parent=Phyra76713;rank=7 scaffold_20 . exon 5292 5362 . + . ID=Phyra76713.7;Parent=Phyra76713;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_20 . CDS 5437 5539 . + 0 ID=Phyra76713;Parent=Phyra76713;rank=8 scaffold_20 . exon 5437 5539 . + . ID=Phyra76713.8;Parent=Phyra76713;constitutive=1;ensembl_phase=2;rank=8 scaffold_20 ensembl protein_coding_gene 6160 6859 . - . ID=Phyra76714;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000003;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 6160 6859 . - . ID=Phyra76714;Parent=Phyra76714;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 6160 6499 . - 0 ID=Phyra76714;Parent=Phyra76714;rank=2 scaffold_20 . exon 6160 6499 . - . ID=Phyra76714.2;Parent=Phyra76714;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 6555 6859 . - 0 ID=Phyra76714;Parent=Phyra76714;rank=1 scaffold_20 . exon 6555 6859 . - . ID=Phyra76714.1;Parent=Phyra76714;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 7021 7478 . + . ID=Phyra76715;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000004;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 7021 7478 . + . ID=Phyra76715;Parent=Phyra76715;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 7021 7207 . + 0 ID=Phyra76715;Parent=Phyra76715;rank=1 scaffold_20 . exon 7021 7207 . + . ID=Phyra76715.1;Parent=Phyra76715;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 7283 7352 . + 0 ID=Phyra76715;Parent=Phyra76715;rank=2 scaffold_20 . exon 7283 7352 . + . ID=Phyra76715.2;Parent=Phyra76715;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_20 . CDS 7415 7478 . + 0 ID=Phyra76715;Parent=Phyra76715;rank=3 scaffold_20 . exon 7415 7478 . + . ID=Phyra76715.3;Parent=Phyra76715;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 ensembl protein_coding_gene 8387 12280 . - . ID=Phyra76717;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000006;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 8387 12280 . - . ID=Phyra76717;Parent=Phyra76717;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 8387 12280 . - 0 ID=Phyra76717;Parent=Phyra76717;rank=1 scaffold_20 . exon 8387 12280 . - . ID=Phyra76717.1;Parent=Phyra76717;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 14055 22652 . - . ID=Phyra76719;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000008;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 14055 22652 . - . ID=Phyra76719;Parent=Phyra76719;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 14055 20407 . - 0 ID=Phyra76719;Parent=Phyra76719;rank=2 scaffold_20 . exon 14055 20407 . - . ID=Phyra76719.2;Parent=Phyra76719;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 20564 22652 . - 0 ID=Phyra76719;Parent=Phyra76719;rank=1 scaffold_20 ensembl protein_coding_gene 12513 13928 . + . ID=Phyra94592;biotype=protein_coding;external_name=C_scaffold_20000001;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 12513 13928 . + . ID=Phyra94592;Parent=Phyra94592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 12513 13928 . + 0 ID=Phyra94592;Parent=Phyra94592;rank=1 scaffold_20 . exon 12513 13928 . + . ID=Phyra94592.1;Parent=Phyra94592;constitutive=1;rank=1 scaffold_20 . repeat_region 17446 20408 . ? . description=trf scaffold_20 . biological_region 22170 22172 0.999 + . logic_name=eponine scaffold_20 . biological_region 22404 22411 0.999 + . logic_name=eponine scaffold_20 . biological_region 22446 22449 0.999 - . logic_name=eponine scaffold_20 . biological_region 22570 22575 0.999 - . logic_name=eponine scaffold_20 . biological_region 23306 23310 0.999 + . logic_name=eponine scaffold_20 . biological_region 27440 27443 0.999 + . logic_name=eponine scaffold_20 . biological_region 27491 27493 0.999 + . logic_name=eponine scaffold_20 . biological_region 28071 28077 0.999 + . logic_name=eponine scaffold_20 . biological_region 29023 29025 0.999 - . logic_name=eponine scaffold_20 . biological_region 29078 29081 0.999 + . logic_name=eponine scaffold_20 . exon 20564 22652 . - . ID=Phyra76719.1;Parent=Phyra76719;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 23814 24425 . + . ID=Phyra76720;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000009;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 23814 24425 . + . ID=Phyra76720;Parent=Phyra76720;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 23814 24425 . + 0 ID=Phyra76720;Parent=Phyra76720;rank=1 scaffold_20 . exon 23814 24425 . + . ID=Phyra76720.1;Parent=Phyra76720;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 26942 30991 . - . ID=Phyra76721;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000010;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 26942 30991 . - . ID=Phyra76721;Parent=Phyra76721;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 26942 27038 . - 0 ID=Phyra76721;Parent=Phyra76721;rank=9 scaffold_20 . exon 26942 27038 . - . ID=Phyra76721.9;Parent=Phyra76721;constitutive=1;ensembl_phase=2;rank=9 scaffold_20 . CDS 27058 27672 . - 0 ID=Phyra76721;Parent=Phyra76721;rank=8 scaffold_20 . exon 27058 27672 . - . ID=Phyra76721.8;Parent=Phyra76721;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_20 . CDS 27816 27922 . - 0 ID=Phyra76721;Parent=Phyra76721;rank=7 scaffold_20 . exon 27816 27922 . - . ID=Phyra76721.7;Parent=Phyra76721;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_20 . CDS 27999 28497 . - 0 ID=Phyra76721;Parent=Phyra76721;rank=6 scaffold_20 . exon 27999 28497 . - . ID=Phyra76721.6;Parent=Phyra76721;constitutive=1;ensembl_phase=2;rank=6 scaffold_20 . CDS 28563 28677 . - 0 ID=Phyra76721;Parent=Phyra76721;rank=5 scaffold_20 . exon 28563 28677 . - . ID=Phyra76721.5;Parent=Phyra76721;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_20 . CDS 28738 28877 . - 0 ID=Phyra76721;Parent=Phyra76721;rank=4 scaffold_20 . exon 28738 28877 . - . ID=Phyra76721.4;Parent=Phyra76721;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_20 . CDS 28940 29163 . - 0 ID=Phyra76721;Parent=Phyra76721;rank=3 scaffold_20 . exon 28940 29163 . - . ID=Phyra76721.3;Parent=Phyra76721;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_20 . CDS 29358 29483 . - 0 ID=Phyra76721;Parent=Phyra76721;rank=2 scaffold_20 . exon 29358 29483 . - . ID=Phyra76721.2;Parent=Phyra76721;constitutive=1;rank=2 scaffold_20 . CDS 29564 30991 . - 0 ID=Phyra76721;Parent=Phyra76721;rank=1 scaffold_20 . exon 29564 30991 . - . ID=Phyra76721.1;Parent=Phyra76721;constitutive=1;rank=1 scaffold_20 . repeat_region 35861 35906 . ? . description=dust scaffold_20 ensembl protein_coding_gene 33448 34284 . + . ID=Phyra44199;biotype=protein_coding;external_name=gwEuk.20.150.1;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 33448 34284 . + . ID=Phyra44199;Parent=Phyra44199;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 33448 33503 . + 0 ID=Phyra44199;Parent=Phyra44199;rank=1 scaffold_20 . exon 33448 33503 . + . ID=Phyra44199.1;Parent=Phyra44199;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 33568 33623 . + 0 ID=Phyra44199;Parent=Phyra44199;rank=2 scaffold_20 . exon 33568 33623 . + . ID=Phyra44199.2;Parent=Phyra44199;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 33757 33891 . + 0 ID=Phyra44199;Parent=Phyra44199;rank=3 scaffold_20 . exon 33757 33891 . + . ID=Phyra44199.3;Parent=Phyra44199;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 33971 34095 . + 0 ID=Phyra44199;Parent=Phyra44199;rank=4 scaffold_20 . exon 33971 34095 . + . ID=Phyra44199.4;Parent=Phyra44199;constitutive=1;ensembl_phase=1;rank=4 scaffold_20 . CDS 34159 34284 . + 0 ID=Phyra44199;Parent=Phyra44199;rank=5 scaffold_20 . exon 34159 34284 . + . ID=Phyra44199.5;Parent=Phyra44199;constitutive=1;rank=5 scaffold_20 ensembl protein_coding_gene 32487 33101 . - . ID=Phyra76722;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000011;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 32487 33101 . - . ID=Phyra76722;Parent=Phyra76722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 32487 32616 . - 0 ID=Phyra76722;Parent=Phyra76722;rank=4 scaffold_20 . exon 32487 32616 . - . ID=Phyra76722.4;Parent=Phyra76722;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 . CDS 32707 32828 . - 0 ID=Phyra76722;Parent=Phyra76722;rank=3 scaffold_20 . exon 32707 32828 . - . ID=Phyra76722.3;Parent=Phyra76722;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_20 . CDS 32896 32988 . - 0 ID=Phyra76722;Parent=Phyra76722;rank=2 scaffold_20 . exon 32896 32988 . - . ID=Phyra76722.2;Parent=Phyra76722;constitutive=1;rank=2 scaffold_20 . CDS 33039 33101 . - 0 ID=Phyra76722;Parent=Phyra76722;rank=1 scaffold_20 . exon 33039 33101 . - . ID=Phyra76722.1;Parent=Phyra76722;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 36037 42018 . + . ID=Phyra76724;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000013;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 36037 42018 . + . ID=Phyra76724;Parent=Phyra76724;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 36037 42018 . + 0 ID=Phyra76724;Parent=Phyra76724;rank=1 scaffold_20 . exon 36037 42018 . + . ID=Phyra76724.1;Parent=Phyra76724;constitutive=1;rank=1 scaffold_20 . biological_region 44939 44943 0.999 + . logic_name=eponine scaffold_20 . biological_region 47252 47255 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 42192 57523 . - . ID=Phyra76725;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000014;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 42192 57523 . - . ID=Phyra76725;Parent=Phyra76725;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 42192 42327 . - 0 ID=Phyra76725;Parent=Phyra76725;rank=10 scaffold_20 . exon 42192 42327 . - . ID=Phyra76725.10;Parent=Phyra76725;constitutive=1;ensembl_phase=2;rank=10 scaffold_20 . CDS 42397 42764 . - 0 ID=Phyra76725;Parent=Phyra76725;rank=9 scaffold_20 . exon 42397 42764 . - . ID=Phyra76725.9;Parent=Phyra76725;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_20 . CDS 42834 42959 . - 0 ID=Phyra76725;Parent=Phyra76725;rank=8 scaffold_20 . exon 42834 42959 . - . ID=Phyra76725.8;Parent=Phyra76725;constitutive=1;rank=8 scaffold_20 . CDS 43034 44408 . - 0 ID=Phyra76725;Parent=Phyra76725;rank=7 scaffold_20 . exon 43034 44408 . - . ID=Phyra76725.7;Parent=Phyra76725;constitutive=1;ensembl_phase=2;rank=7 scaffold_20 . CDS 44470 44516 . - 0 ID=Phyra76725;Parent=Phyra76725;rank=6 scaffold_20 . exon 44470 44516 . - . ID=Phyra76725.6;Parent=Phyra76725;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_20 . CDS 44588 44608 . - 0 ID=Phyra76725;Parent=Phyra76725;rank=5 scaffold_20 . exon 44588 44608 . - . ID=Phyra76725.5;Parent=Phyra76725;constitutive=1;rank=5 scaffold_20 . CDS 44674 44752 . - 0 ID=Phyra76725;Parent=Phyra76725;rank=4 scaffold_20 . exon 44674 44752 . - . ID=Phyra76725.4;Parent=Phyra76725;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 . CDS 44918 45435 . - 0 ID=Phyra76725;Parent=Phyra76725;rank=3 scaffold_20 . exon 44918 45435 . - . ID=Phyra76725.3;Parent=Phyra76725;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_20 . CDS 45496 46247 . - 0 ID=Phyra76725;Parent=Phyra76725;rank=2 scaffold_20 . exon 45496 46247 . - . ID=Phyra76725.2;Parent=Phyra76725;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 46384 57523 . - 0 ID=Phyra76725;Parent=Phyra76725;rank=1 scaffold_20 . exon 46384 57523 . - . ID=Phyra76725.1;Parent=Phyra76725;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 59566 60549 . + . ID=Phyra71445;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_20000003;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 59566 60549 . + . ID=Phyra71445;Parent=Phyra71445;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 59566 60549 . + 0 ID=Phyra71445;Parent=Phyra71445;rank=1 scaffold_20 . exon 59566 60549 . + . ID=Phyra71445.1;Parent=Phyra71445;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 57841 59422 . - . ID=Phyra76726;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000015;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 57841 59422 . - . ID=Phyra76726;Parent=Phyra76726;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 57841 57853 . - 0 ID=Phyra76726;Parent=Phyra76726;rank=7 scaffold_20 . exon 57841 57853 . - . ID=Phyra76726.7;Parent=Phyra76726;constitutive=1;ensembl_phase=2;rank=7 scaffold_20 . CDS 58021 58115 . - 0 ID=Phyra76726;Parent=Phyra76726;rank=6 scaffold_20 . exon 58021 58115 . - . ID=Phyra76726.6;Parent=Phyra76726;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_20 . CDS 58190 58277 . - 0 ID=Phyra76726;Parent=Phyra76726;rank=5 scaffold_20 . exon 58190 58277 . - . ID=Phyra76726.5;Parent=Phyra76726;constitutive=1;ensembl_phase=2;rank=5 scaffold_20 . CDS 58336 58475 . - 0 ID=Phyra76726;Parent=Phyra76726;rank=4 scaffold_20 . exon 58336 58475 . - . ID=Phyra76726.4;Parent=Phyra76726;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_20 . CDS 58547 58789 . - 0 ID=Phyra76726;Parent=Phyra76726;rank=3 scaffold_20 . exon 58547 58789 . - . ID=Phyra76726.3;Parent=Phyra76726;constitutive=1;rank=3 scaffold_20 . CDS 58828 59215 . - 0 ID=Phyra76726;Parent=Phyra76726;rank=2 scaffold_20 . exon 58828 59215 . - . ID=Phyra76726.2;Parent=Phyra76726;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 59262 59422 . - 0 ID=Phyra76726;Parent=Phyra76726;rank=1 scaffold_20 . exon 59262 59422 . - . ID=Phyra76726.1;Parent=Phyra76726;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . biological_region 59806 59811 0.999 - . logic_name=eponine scaffold_20 . biological_region 59861 59866 0.999 + . logic_name=eponine scaffold_20 . biological_region 60300 60305 0.999 - . logic_name=eponine scaffold_20 . biological_region 60476 60477 0.999 - . logic_name=eponine scaffold_20 . biological_region 62281 62282 0.999 - . logic_name=eponine scaffold_20 . biological_region 65395 65398 0.999 + . logic_name=eponine scaffold_20 . biological_region 65685 65687 0.999 + . logic_name=eponine scaffold_20 . biological_region 66015 66018 0.999 + . logic_name=eponine scaffold_20 . biological_region 66180 66181 0.999 - . logic_name=eponine scaffold_20 . repeat_region 66321 66352 . ? . description=trf scaffold_20 . repeat_region 66322 66352 . ? . description=trf scaffold_20 . repeat_region 66899 66948 . ? . description=dust scaffold_20 . biological_region 67488 67491 0.999 - . logic_name=eponine scaffold_20 . repeat_region 68491 68501 . ? . description=dust scaffold_20 . repeat_region 68791 68840 . ? . description=dust scaffold_20 ensembl protein_coding_gene 60783 62381 . + . ID=Phyra76728;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000017;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 60783 62381 . + . ID=Phyra76728;Parent=Phyra76728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 60783 62381 . + 0 ID=Phyra76728;Parent=Phyra76728;rank=1 scaffold_20 . exon 60783 62381 . + . ID=Phyra76728.1;Parent=Phyra76728;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 67284 67865 . + . ID=Phyra76730;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000019;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 67284 67865 . + . ID=Phyra76730;Parent=Phyra76730;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 67284 67453 . + 0 ID=Phyra76730;Parent=Phyra76730;rank=1 scaffold_20 . exon 67284 67453 . + . ID=Phyra76730.1;Parent=Phyra76730;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 67633 67697 . + 0 ID=Phyra76730;Parent=Phyra76730;rank=2 scaffold_20 . exon 67633 67697 . + . ID=Phyra76730.2;Parent=Phyra76730;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 67795 67865 . + 0 ID=Phyra76730;Parent=Phyra76730;rank=3 scaffold_20 . exon 67795 67865 . + . ID=Phyra76730.3;Parent=Phyra76730;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 ensembl protein_coding_gene 68843 69622 . - . ID=Phyra76731;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000020;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 68843 69622 . - . ID=Phyra76731;Parent=Phyra76731;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 68843 69622 . - 0 ID=Phyra76731;Parent=Phyra76731;rank=1 scaffold_20 . exon 68843 69622 . - . ID=Phyra76731.1;Parent=Phyra76731;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 62802 66790 . - . ID=Phyra94594;biotype=protein_coding;external_name=C_scaffold_20000003;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 62802 66790 . - . ID=Phyra94594;Parent=Phyra94594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 62802 62858 . - 0 ID=Phyra94594;Parent=Phyra94594;rank=15 scaffold_20 . exon 62802 62858 . - . ID=Phyra94594.15;Parent=Phyra94594;constitutive=1;rank=15 scaffold_20 . CDS 62965 63085 . - 0 ID=Phyra94594;Parent=Phyra94594;rank=14 scaffold_20 . exon 62965 63085 . - . ID=Phyra94594.14;Parent=Phyra94594;constitutive=1;ensembl_phase=2;rank=14 scaffold_20 . CDS 63163 63299 . - 0 ID=Phyra94594;Parent=Phyra94594;rank=13 scaffold_20 . exon 63163 63299 . - . ID=Phyra94594.13;Parent=Phyra94594;constitutive=1;ensembl_end_phase=2;rank=13 scaffold_20 . CDS 63534 63604 . - 0 ID=Phyra94594;Parent=Phyra94594;rank=12 scaffold_20 . exon 63534 63604 . - . ID=Phyra94594.12;Parent=Phyra94594;constitutive=1;ensembl_phase=1;rank=12 scaffold_20 . CDS 63681 63697 . - 0 ID=Phyra94594;Parent=Phyra94594;rank=11 scaffold_20 . exon 63681 63697 . - . ID=Phyra94594.11;Parent=Phyra94594;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_20 . CDS 63803 64142 . - 0 ID=Phyra94594;Parent=Phyra94594;rank=10 scaffold_20 . exon 63803 64142 . - . ID=Phyra94594.10;Parent=Phyra94594;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_20 . CDS 64167 64174 . - 0 ID=Phyra94594;Parent=Phyra94594;rank=9 scaffold_20 . exon 64167 64174 . - . ID=Phyra94594.9;Parent=Phyra94594;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_20 . CDS 64244 64269 . - 0 ID=Phyra94594;Parent=Phyra94594;rank=8 scaffold_20 . exon 64244 64269 . - . ID=Phyra94594.8;Parent=Phyra94594;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_20 . CDS 64291 64529 . - 0 ID=Phyra94594;Parent=Phyra94594;rank=7 scaffold_20 . exon 64291 64529 . - . ID=Phyra94594.7;Parent=Phyra94594;constitutive=1;ensembl_phase=1;rank=7 scaffold_20 . CDS 64978 65076 . - 0 ID=Phyra94594;Parent=Phyra94594;rank=6 scaffold_20 . exon 64978 65076 . - . ID=Phyra94594.6;Parent=Phyra94594;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_20 . CDS 65120 65517 . - 0 ID=Phyra94594;Parent=Phyra94594;rank=5 scaffold_20 . exon 65120 65517 . - . ID=Phyra94594.5;Parent=Phyra94594;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_20 . CDS 66032 66155 . - 0 ID=Phyra94594;Parent=Phyra94594;rank=4 scaffold_20 . exon 66032 66155 . - . ID=Phyra94594.4;Parent=Phyra94594;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_20 . CDS 66212 66497 . - 0 ID=Phyra94594;Parent=Phyra94594;rank=3 scaffold_20 . exon 66212 66497 . - . ID=Phyra94594.3;Parent=Phyra94594;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_20 . CDS 66565 66621 . - 0 ID=Phyra94594;Parent=Phyra94594;rank=2 scaffold_20 . exon 66565 66621 . - . ID=Phyra94594.2;Parent=Phyra94594;constitutive=1;rank=2 scaffold_20 . CDS 66710 66790 . - 0 ID=Phyra94594;Parent=Phyra94594;rank=1 scaffold_20 . exon 66710 66790 . - . ID=Phyra94594.1;Parent=Phyra94594;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 70864 74113 . + . ID=Phyra76732;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000021;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 70864 74113 . + . ID=Phyra76732;Parent=Phyra76732;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 70864 71216 . + 0 ID=Phyra76732;Parent=Phyra76732;rank=1 scaffold_20 . exon 70864 71216 . + . ID=Phyra76732.1;Parent=Phyra76732;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 71360 71842 . + 0 ID=Phyra76732;Parent=Phyra76732;rank=2 scaffold_20 . exon 71360 71842 . + . ID=Phyra76732.2;Parent=Phyra76732;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_20 . CDS 72088 72436 . + 0 ID=Phyra76732;Parent=Phyra76732;rank=3 scaffold_20 . exon 72088 72436 . + . ID=Phyra76732.3;Parent=Phyra76732;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 . CDS 72591 72848 . + 0 ID=Phyra76732;Parent=Phyra76732;rank=4 scaffold_20 . exon 72591 72848 . + . ID=Phyra76732.4;Parent=Phyra76732;constitutive=1;rank=4 scaffold_20 . CDS 72902 74113 . + 0 ID=Phyra76732;Parent=Phyra76732;rank=5 scaffold_20 . exon 72902 74113 . + . ID=Phyra76732.5;Parent=Phyra76732;constitutive=1;rank=5 scaffold_20 . repeat_region 79705 79732 . ? . description=dust scaffold_20 . repeat_region 80095 80122 . ? . description=trf scaffold_20 . repeat_region 80095 80122 . ? . description=dust scaffold_20 . repeat_region 84161 84170 . ? . description=dust scaffold_20 . repeat_region 86391 86403 . ? . description=dust scaffold_20 . repeat_region 86637 86694 . ? . description=trf scaffold_20 . biological_region 87710 87713 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 87831 90043 . + . ID=Phyra76733;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000022;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 87831 90043 . + . ID=Phyra76733;Parent=Phyra76733;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 87831 88024 . + 0 ID=Phyra76733;Parent=Phyra76733;rank=1 scaffold_20 . exon 87831 88024 . + . ID=Phyra76733.1;Parent=Phyra76733;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 88093 90043 . + 0 ID=Phyra76733;Parent=Phyra76733;rank=2 scaffold_20 . exon 88093 90043 . + . ID=Phyra76733.2;Parent=Phyra76733;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 ensembl protein_coding_gene 92784 95059 . + . ID=Phyra94595;biotype=protein_coding;external_name=C_scaffold_20000004;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 92784 95059 . + . ID=Phyra94595;Parent=Phyra94595;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 92784 93023 . + 0 ID=Phyra94595;Parent=Phyra94595;rank=1 scaffold_20 . exon 92784 93023 . + . ID=Phyra94595.1;Parent=Phyra94595;constitutive=1;rank=1 scaffold_20 . CDS 93063 93311 . + 0 ID=Phyra94595;Parent=Phyra94595;rank=2 scaffold_20 . exon 93063 93311 . + . ID=Phyra94595.2;Parent=Phyra94595;constitutive=1;rank=2 scaffold_20 . CDS 93401 93493 . + 0 ID=Phyra94595;Parent=Phyra94595;rank=3 scaffold_20 . exon 93401 93493 . + . ID=Phyra94595.3;Parent=Phyra94595;constitutive=1;rank=3 scaffold_20 . CDS 93554 93613 . + 0 ID=Phyra94595;Parent=Phyra94595;rank=4 scaffold_20 . exon 93554 93613 . + . ID=Phyra94595.4;Parent=Phyra94595;constitutive=1;rank=4 scaffold_20 . CDS 93682 93794 . + 0 ID=Phyra94595;Parent=Phyra94595;rank=5 scaffold_20 . exon 93682 93794 . + . ID=Phyra94595.5;Parent=Phyra94595;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_20 . CDS 93843 94056 . + 0 ID=Phyra94595;Parent=Phyra94595;rank=6 scaffold_20 . exon 93843 94056 . + . ID=Phyra94595.6;Parent=Phyra94595;constitutive=1;ensembl_phase=2;rank=6 scaffold_20 . CDS 94132 94225 . + 0 ID=Phyra94595;Parent=Phyra94595;rank=7 scaffold_20 . exon 94132 94225 . + . ID=Phyra94595.7;Parent=Phyra94595;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_20 . CDS 94404 94508 . + 0 ID=Phyra94595;Parent=Phyra94595;rank=8 scaffold_20 . exon 94404 94508 . + . ID=Phyra94595.8;Parent=Phyra94595;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_20 . CDS 94602 94795 . + 0 ID=Phyra94595;Parent=Phyra94595;rank=9 scaffold_20 . exon 94602 94795 . + . ID=Phyra94595.9;Parent=Phyra94595;constitutive=1;ensembl_phase=1;rank=9 scaffold_20 . CDS 95021 95059 . + 0 ID=Phyra94595;Parent=Phyra94595;rank=10 scaffold_20 . exon 95021 95059 . + . ID=Phyra94595.10;Parent=Phyra94595;constitutive=1;rank=10 scaffold_20 . repeat_region 100990 102088 . - . description=Gypsy-2-I_PI-int scaffold_20 . repeat_region 102229 102236 . ? . description=dust scaffold_20 ensembl protein_coding_gene 104210 105308 . + . ID=Phyra76735;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000024;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 104210 105308 . + . ID=Phyra76735;Parent=Phyra76735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 104210 105212 . + 0 ID=Phyra76735;Parent=Phyra76735;rank=1 scaffold_20 . exon 104210 105212 . + . ID=Phyra76735.1;Parent=Phyra76735;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 105283 105308 . + 0 ID=Phyra76735;Parent=Phyra76735;rank=2 scaffold_20 . exon 105283 105308 . + . ID=Phyra76735.2;Parent=Phyra76735;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . biological_region 120426 120430 0.999 + . logic_name=eponine scaffold_20 . biological_region 120441 120443 0.999 - . logic_name=eponine scaffold_20 . repeat_region 121138 121187 . ? . description=dust scaffold_20 . repeat_region 123671 123698 . ? . description=trf scaffold_20 . repeat_region 124394 124401 . ? . description=dust scaffold_20 . repeat_region 127074 127081 . ? . description=dust scaffold_20 ensembl protein_coding_gene 119805 120664 . - . ID=Phyra76736;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000025;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 119805 120664 . - . ID=Phyra76736;Parent=Phyra76736;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 119805 119894 . - 0 ID=Phyra76736;Parent=Phyra76736;rank=3 scaffold_20 . exon 119805 119894 . - . ID=Phyra76736.3;Parent=Phyra76736;constitutive=1;rank=3 scaffold_20 . CDS 119955 120047 . - 0 ID=Phyra76736;Parent=Phyra76736;rank=2 scaffold_20 . exon 119955 120047 . - . ID=Phyra76736.2;Parent=Phyra76736;constitutive=1;rank=2 scaffold_20 . CDS 120137 120664 . - 0 ID=Phyra76736;Parent=Phyra76736;rank=1 scaffold_20 . exon 120137 120664 . - . ID=Phyra76736.1;Parent=Phyra76736;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 136138 137067 . - . ID=Phyra76737;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000026;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 136138 137067 . - . ID=Phyra76737;Parent=Phyra76737;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 136138 136152 . - 0 ID=Phyra76737;Parent=Phyra76737;rank=3 scaffold_20 . exon 136138 136152 . - . ID=Phyra76737.3;Parent=Phyra76737;constitutive=1;rank=3 scaffold_20 . CDS 136228 136607 . - 0 ID=Phyra76737;Parent=Phyra76737;rank=2 scaffold_20 . exon 136228 136607 . - . ID=Phyra76737.2;Parent=Phyra76737;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 136707 137067 . - 0 ID=Phyra76737;Parent=Phyra76737;rank=1 scaffold_20 . exon 136707 137067 . - . ID=Phyra76737.1;Parent=Phyra76737;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 138125 138484 . + . ID=Phyra76738;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000027;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 138125 138484 . + . ID=Phyra76738;Parent=Phyra76738;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 138125 138484 . + 0 ID=Phyra76738;Parent=Phyra76738;rank=1 scaffold_20 . exon 138125 138484 . + . ID=Phyra76738.1;Parent=Phyra76738;constitutive=1;rank=1 scaffold_20 . biological_region 139772 139776 0.999 + . logic_name=eponine scaffold_20 . biological_region 139793 139798 0.999 - . logic_name=eponine scaffold_20 . biological_region 145185 145186 0.999 + . logic_name=eponine scaffold_20 . repeat_region 145927 145934 . ? . description=dust scaffold_20 ensembl protein_coding_gene 148339 150571 . + . ID=Phyra76742;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000031;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 148339 150571 . + . ID=Phyra76742;Parent=Phyra76742;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 148339 148399 . + 0 ID=Phyra76742;Parent=Phyra76742;rank=1 scaffold_20 . exon 148339 148399 . + . ID=Phyra76742.1;Parent=Phyra76742;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 148460 148610 . + 0 ID=Phyra76742;Parent=Phyra76742;rank=2 scaffold_20 . exon 148460 148610 . + . ID=Phyra76742.2;Parent=Phyra76742;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_20 . CDS 148853 148875 . + 0 ID=Phyra76742;Parent=Phyra76742;rank=3 scaffold_20 . exon 148853 148875 . + . ID=Phyra76742.3;Parent=Phyra76742;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_20 . CDS 149005 150306 . + 0 ID=Phyra76742;Parent=Phyra76742;rank=4 scaffold_20 . exon 149005 150306 . + . ID=Phyra76742.4;Parent=Phyra76742;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_20 . CDS 150363 150571 . + 0 ID=Phyra76742;Parent=Phyra76742;rank=5 scaffold_20 ensembl protein_coding_gene 139488 139925 . + . ID=Phyra94596;biotype=protein_coding;external_name=C_scaffold_20000005;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 139488 139925 . + . ID=Phyra94596;Parent=Phyra94596;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 139488 139925 . + 0 ID=Phyra94596;Parent=Phyra94596;rank=1 scaffold_20 . exon 139488 139925 . + . ID=Phyra94596.1;Parent=Phyra94596;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 140137 145440 . - . ID=Phyra94597;biotype=protein_coding;external_name=C_scaffold_20000006;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 140137 145440 . - . ID=Phyra94597;Parent=Phyra94597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 140137 140460 . - 0 ID=Phyra94597;Parent=Phyra94597;rank=11 scaffold_20 . exon 140137 140460 . - . ID=Phyra94597.11;Parent=Phyra94597;constitutive=1;rank=11 scaffold_20 . CDS 140565 140690 . - 0 ID=Phyra94597;Parent=Phyra94597;rank=10 scaffold_20 . exon 140565 140690 . - . ID=Phyra94597.10;Parent=Phyra94597;constitutive=1;rank=10 scaffold_20 . CDS 140771 140873 . - 0 ID=Phyra94597;Parent=Phyra94597;rank=9 scaffold_20 . exon 140771 140873 . - . ID=Phyra94597.9;Parent=Phyra94597;constitutive=1;ensembl_phase=2;rank=9 scaffold_20 . CDS 140947 141096 . - 0 ID=Phyra94597;Parent=Phyra94597;rank=8 scaffold_20 . exon 140947 141096 . - . ID=Phyra94597.8;Parent=Phyra94597;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_20 . CDS 141167 141772 . - 0 ID=Phyra94597;Parent=Phyra94597;rank=7 scaffold_20 . exon 141167 141772 . - . ID=Phyra94597.7;Parent=Phyra94597;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_20 . CDS 141923 142076 . - 0 ID=Phyra94597;Parent=Phyra94597;rank=6 scaffold_20 . exon 141923 142076 . - . ID=Phyra94597.6;Parent=Phyra94597;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_20 . CDS 142161 143341 . - 0 ID=Phyra94597;Parent=Phyra94597;rank=5 scaffold_20 . exon 142161 143341 . - . ID=Phyra94597.5;Parent=Phyra94597;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_20 . CDS 143462 144268 . - 0 ID=Phyra94597;Parent=Phyra94597;rank=4 scaffold_20 . exon 143462 144268 . - . ID=Phyra94597.4;Parent=Phyra94597;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_20 . CDS 144330 144447 . - 0 ID=Phyra94597;Parent=Phyra94597;rank=3 scaffold_20 . exon 144330 144447 . - . ID=Phyra94597.3;Parent=Phyra94597;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_20 . CDS 144521 144938 . - 0 ID=Phyra94597;Parent=Phyra94597;rank=2 scaffold_20 . exon 144521 144938 . - . ID=Phyra94597.2;Parent=Phyra94597;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_20 . CDS 145012 145440 . - 0 ID=Phyra94597;Parent=Phyra94597;rank=1 scaffold_20 . exon 145012 145440 . - . ID=Phyra94597.1;Parent=Phyra94597;constitutive=1;rank=1 scaffold_20 . repeat_region 151340 151453 . + . description=(TCG)n scaffold_20 . repeat_region 157697 157720 . ? . description=trf scaffold_20 ensembl protein_coding_gene 153765 154630 . + . ID=Phyra44217;biotype=protein_coding;external_name=gwEuk.20.168.1;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 153765 154630 . + . ID=Phyra44217;Parent=Phyra44217;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 153765 154252 . + 0 ID=Phyra44217;Parent=Phyra44217;rank=1 scaffold_20 . exon 153765 154252 . + . ID=Phyra44217.1;Parent=Phyra44217;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 154315 154630 . + 0 ID=Phyra44217;Parent=Phyra44217;rank=2 scaffold_20 . exon 154315 154630 . + . ID=Phyra44217.2;Parent=Phyra44217;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . exon 150363 150571 . + . ID=Phyra76742.5;Parent=Phyra76742;constitutive=1;ensembl_phase=1;rank=5 scaffold_20 ensembl protein_coding_gene 151312 153573 . - . ID=Phyra76743;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000032;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 151312 153573 . - . ID=Phyra76743;Parent=Phyra76743;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 151312 153573 . - 0 ID=Phyra76743;Parent=Phyra76743;rank=1 scaffold_20 . exon 151312 153573 . - . ID=Phyra76743.1;Parent=Phyra76743;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 156351 157946 . + . ID=Phyra76745;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000034;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 156351 157946 . + . ID=Phyra76745;Parent=Phyra76745;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 156351 156525 . + 0 ID=Phyra76745;Parent=Phyra76745;rank=1 scaffold_20 . exon 156351 156525 . + . ID=Phyra76745.1;Parent=Phyra76745;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 156664 157193 . + 0 ID=Phyra76745;Parent=Phyra76745;rank=2 scaffold_20 . exon 156664 157193 . + . ID=Phyra76745.2;Parent=Phyra76745;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 157269 157335 . + 0 ID=Phyra76745;Parent=Phyra76745;rank=3 scaffold_20 . exon 157269 157335 . + . ID=Phyra76745.3;Parent=Phyra76745;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_20 . CDS 157513 157946 . + 0 ID=Phyra76745;Parent=Phyra76745;rank=4 scaffold_20 . exon 157513 157946 . + . ID=Phyra76745.4;Parent=Phyra76745;constitutive=1;ensembl_phase=1;rank=4 scaffold_20 ensembl protein_coding_gene 158221 159337 . - . ID=Phyra76746;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000035;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 158221 159337 . - . ID=Phyra76746;Parent=Phyra76746;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 158221 158426 . - 0 ID=Phyra76746;Parent=Phyra76746;rank=3 scaffold_20 . exon 158221 158426 . - . ID=Phyra76746.3;Parent=Phyra76746;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 158456 158526 . - 0 ID=Phyra76746;Parent=Phyra76746;rank=2 scaffold_20 . exon 158456 158526 . - . ID=Phyra76746.2;Parent=Phyra76746;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 158568 159337 . - 0 ID=Phyra76746;Parent=Phyra76746;rank=1 scaffold_20 . exon 158568 159337 . - . ID=Phyra76746.1;Parent=Phyra76746;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . biological_region 165546 165548 0.999 - . logic_name=eponine scaffold_20 . biological_region 165564 165567 0.999 + . logic_name=eponine scaffold_20 . biological_region 165602 165605 0.999 + . logic_name=eponine scaffold_20 . biological_region 165637 165639 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 165468 170268 . + . ID=Phyra76747;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000036;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 165468 170268 . + . ID=Phyra76747;Parent=Phyra76747;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 165468 166356 . + 0 ID=Phyra76747;Parent=Phyra76747;rank=1 scaffold_20 . exon 165468 166356 . + . ID=Phyra76747.1;Parent=Phyra76747;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 166448 166519 . + 0 ID=Phyra76747;Parent=Phyra76747;rank=2 scaffold_20 . exon 166448 166519 . + . ID=Phyra76747.2;Parent=Phyra76747;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 166586 166699 . + 0 ID=Phyra76747;Parent=Phyra76747;rank=3 scaffold_20 . exon 166586 166699 . + . ID=Phyra76747.3;Parent=Phyra76747;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 166770 166865 . + 0 ID=Phyra76747;Parent=Phyra76747;rank=4 scaffold_20 . exon 166770 166865 . + . ID=Phyra76747.4;Parent=Phyra76747;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_20 . CDS 166936 167256 . + 0 ID=Phyra76747;Parent=Phyra76747;rank=5 scaffold_20 . exon 166936 167256 . + . ID=Phyra76747.5;Parent=Phyra76747;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_20 . CDS 167603 170268 . + 0 ID=Phyra76747;Parent=Phyra76747;rank=6 scaffold_20 . exon 167603 170268 . + . ID=Phyra76747.6;Parent=Phyra76747;constitutive=1;ensembl_phase=1;rank=6 scaffold_20 . repeat_region 169537 169617 . ? . description=trf scaffold_20 . repeat_region 169558 169631 . ? . description=trf scaffold_20 ensembl protein_coding_gene 171567 172665 . - . ID=Phyra76748;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000037;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 171567 172665 . - . ID=Phyra76748;Parent=Phyra76748;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 171567 171586 . - 0 ID=Phyra76748;Parent=Phyra76748;rank=3 scaffold_20 . exon 171567 171586 . - . ID=Phyra76748.3;Parent=Phyra76748;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 171768 172293 . - 0 ID=Phyra76748;Parent=Phyra76748;rank=2 scaffold_20 . exon 171768 172293 . - . ID=Phyra76748.2;Parent=Phyra76748;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_20 . CDS 172444 172665 . - 0 ID=Phyra76748;Parent=Phyra76748;rank=1 scaffold_20 . exon 172444 172665 . - . ID=Phyra76748.1;Parent=Phyra76748;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 173223 174000 . - . ID=Phyra76749;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000038;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 173223 174000 . - . ID=Phyra76749;Parent=Phyra76749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 173223 173730 . - 0 ID=Phyra76749;Parent=Phyra76749;rank=2 scaffold_20 . exon 173223 173730 . - . ID=Phyra76749.2;Parent=Phyra76749;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 173801 174000 . - 0 ID=Phyra76749;Parent=Phyra76749;rank=1 scaffold_20 . exon 173801 174000 . - . ID=Phyra76749.1;Parent=Phyra76749;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 174550 175095 . - . ID=Phyra76750;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000039;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 174550 175095 . - . ID=Phyra76750;Parent=Phyra76750;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 174550 175095 . - 0 ID=Phyra76750;Parent=Phyra76750;rank=1 scaffold_20 . exon 174550 175095 . - . ID=Phyra76750.1;Parent=Phyra76750;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 178829 179761 . - . ID=Phyra76753;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000042;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 178829 179761 . - . ID=Phyra76753;Parent=Phyra76753;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 178829 179761 . - 0 ID=Phyra76753;Parent=Phyra76753;rank=1 scaffold_20 . exon 178829 179761 . - . ID=Phyra76753.1;Parent=Phyra76753;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 176087 177211 . + . ID=Phyra94602;biotype=protein_coding;external_name=C_scaffold_20000011;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 176087 177211 . + . ID=Phyra94602;Parent=Phyra94602;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 176087 177211 . + 0 ID=Phyra94602;Parent=Phyra94602;rank=1 scaffold_20 . exon 176087 177211 . + . ID=Phyra94602.1;Parent=Phyra94602;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 177330 178547 . - . ID=Phyra94603;biotype=protein_coding;external_name=C_scaffold_20000012;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 177330 178547 . - . ID=Phyra94603;Parent=Phyra94603;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 177330 178547 . - 0 ID=Phyra94603;Parent=Phyra94603;rank=1 scaffold_20 . exon 177330 178547 . - . ID=Phyra94603.1;Parent=Phyra94603;constitutive=1;rank=1 scaffold_20 . biological_region 179682 179684 0.999 - . logic_name=eponine scaffold_20 . biological_region 184273 184274 0.999 - . logic_name=eponine scaffold_20 . repeat_region 188593 188608 . ? . description=dust scaffold_20 ensembl protein_coding_gene 181908 183491 . - . ID=Phyra76754;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000043;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 181908 183491 . - . ID=Phyra76754;Parent=Phyra76754;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 181908 183491 . - 0 ID=Phyra76754;Parent=Phyra76754;rank=1 scaffold_20 . exon 181908 183491 . - . ID=Phyra76754.1;Parent=Phyra76754;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 184024 187290 . - . ID=Phyra76755;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000044;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 184024 187290 . - . ID=Phyra76755;Parent=Phyra76755;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 184024 187290 . - 0 ID=Phyra76755;Parent=Phyra76755;rank=1 scaffold_20 . exon 184024 187290 . - . ID=Phyra76755.1;Parent=Phyra76755;constitutive=1;rank=1 scaffold_20 . repeat_region 190995 191021 . ? . description=trf scaffold_20 . repeat_region 195396 195441 . ? . description=trf scaffold_20 . repeat_region 197133 197213 . + . description=GypsyPi-1c_LTR scaffold_20 ensembl protein_coding_gene 190089 191844 . - . ID=Phyra76756;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000045;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 190089 191844 . - . ID=Phyra76756;Parent=Phyra76756;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 190089 190790 . - 0 ID=Phyra76756;Parent=Phyra76756;rank=3 scaffold_20 . exon 190089 190790 . - . ID=Phyra76756.3;Parent=Phyra76756;constitutive=1;rank=3 scaffold_20 . CDS 190827 191243 . - 0 ID=Phyra76756;Parent=Phyra76756;rank=2 scaffold_20 . exon 190827 191243 . - . ID=Phyra76756.2;Parent=Phyra76756;constitutive=1;rank=2 scaffold_20 . CDS 191299 191844 . - 0 ID=Phyra76756;Parent=Phyra76756;rank=1 scaffold_20 . exon 191299 191844 . - . ID=Phyra76756.1;Parent=Phyra76756;constitutive=1;rank=1 scaffold_20 . repeat_region 199305 199312 . ? . description=dust scaffold_20 ensembl protein_coding_gene 203133 205760 . + . ID=Phyra76757;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000046;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 203133 205760 . + . ID=Phyra76757;Parent=Phyra76757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 203133 205760 . + 0 ID=Phyra76757;Parent=Phyra76757;rank=1 scaffold_20 . exon 203133 205760 . + . ID=Phyra76757.1;Parent=Phyra76757;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 206392 215088 . - . ID=Phyra76758;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000047;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 206392 215088 . - . ID=Phyra76758;Parent=Phyra76758;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 206392 207243 . - 0 ID=Phyra76758;Parent=Phyra76758;rank=13 scaffold_20 . exon 206392 207243 . - . ID=Phyra76758.13;Parent=Phyra76758;constitutive=1;rank=13 scaffold_20 . CDS 207320 208420 . - 0 ID=Phyra76758;Parent=Phyra76758;rank=12 scaffold_20 . exon 207320 208420 . - . ID=Phyra76758.12;Parent=Phyra76758;constitutive=1;rank=12 scaffold_20 . CDS 209240 209961 . - 0 ID=Phyra76758;Parent=Phyra76758;rank=11 scaffold_20 . CDS 210085 210710 . - 0 ID=Phyra76758;Parent=Phyra76758;rank=10 scaffold_20 . CDS 211157 211260 . - 0 ID=Phyra76758;Parent=Phyra76758;rank=9 scaffold_20 . CDS 211394 212152 . - 0 ID=Phyra76758;Parent=Phyra76758;rank=8 scaffold_20 . CDS 212237 212334 . - 0 ID=Phyra76758;Parent=Phyra76758;rank=7 scaffold_20 . CDS 212374 212890 . - 0 ID=Phyra76758;Parent=Phyra76758;rank=6 scaffold_20 . CDS 213012 214081 . - 0 ID=Phyra76758;Parent=Phyra76758;rank=5 scaffold_20 . CDS 214136 214466 . - 0 ID=Phyra76758;Parent=Phyra76758;rank=4 scaffold_20 . CDS 214530 214633 . - 0 ID=Phyra76758;Parent=Phyra76758;rank=3 scaffold_20 . CDS 214696 214798 . - 0 ID=Phyra76758;Parent=Phyra76758;rank=2 scaffold_20 . CDS 214858 215088 . - 0 ID=Phyra76758;Parent=Phyra76758;rank=1 scaffold_20 . exon 209240 209961 . - . ID=Phyra76758.11;Parent=Phyra76758;constitutive=1;ensembl_phase=1;rank=11 scaffold_20 . exon 210085 210710 . - . ID=Phyra76758.10;Parent=Phyra76758;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_20 . exon 211157 211260 . - . ID=Phyra76758.9;Parent=Phyra76758;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_20 . exon 211394 212152 . - . ID=Phyra76758.8;Parent=Phyra76758;constitutive=1;rank=8 scaffold_20 . exon 212237 212334 . - . ID=Phyra76758.7;Parent=Phyra76758;constitutive=1;ensembl_phase=1;rank=7 scaffold_20 . exon 212374 212890 . - . ID=Phyra76758.6;Parent=Phyra76758;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_20 . exon 213012 214081 . - . ID=Phyra76758.5;Parent=Phyra76758;constitutive=1;ensembl_phase=1;rank=5 scaffold_20 . exon 214136 214466 . - . ID=Phyra76758.4;Parent=Phyra76758;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_20 . exon 214530 214633 . - . ID=Phyra76758.3;Parent=Phyra76758;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 . exon 214696 214798 . - . ID=Phyra76758.2;Parent=Phyra76758;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_20 . exon 214858 215088 . - . ID=Phyra76758.1;Parent=Phyra76758;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 216134 217024 . + . ID=Phyra76759;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000048;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 216134 217024 . + . ID=Phyra76759;Parent=Phyra76759;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 216134 217024 . + 0 ID=Phyra76759;Parent=Phyra76759;rank=1 scaffold_20 . exon 216134 217024 . + . ID=Phyra76759.1;Parent=Phyra76759;constitutive=1;rank=1 scaffold_20 . biological_region 221932 221933 0.999 - . logic_name=eponine scaffold_20 . repeat_region 224629 224675 . ? . description=trf scaffold_20 ensembl protein_coding_gene 227483 231321 . - . ID=Phyra44056;biotype=protein_coding;external_name=gwEuk.20.7.1;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 227483 231321 . - . ID=Phyra44056;Parent=Phyra44056;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 227483 228538 . - 0 ID=Phyra44056;Parent=Phyra44056;rank=4 scaffold_20 . exon 227483 228538 . - . ID=Phyra44056.4;Parent=Phyra44056;constitutive=1;rank=4 scaffold_20 . CDS 230702 230851 . - 0 ID=Phyra44056;Parent=Phyra44056;rank=3 scaffold_20 . CDS 230916 231053 . - 0 ID=Phyra44056;Parent=Phyra44056;rank=2 scaffold_20 . CDS 231115 231321 . - 0 ID=Phyra44056;Parent=Phyra44056;rank=1 scaffold_20 ensembl protein_coding_gene 219145 221556 . + . ID=Phyra76760;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000049;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 219145 221556 . + . ID=Phyra76760;Parent=Phyra76760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 219145 220031 . + 0 ID=Phyra76760;Parent=Phyra76760;rank=1 scaffold_20 . exon 219145 220031 . + . ID=Phyra76760.1;Parent=Phyra76760;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 220134 220382 . + 0 ID=Phyra76760;Parent=Phyra76760;rank=2 scaffold_20 . exon 220134 220382 . + . ID=Phyra76760.2;Parent=Phyra76760;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_20 . CDS 220673 221065 . + 0 ID=Phyra76760;Parent=Phyra76760;rank=3 scaffold_20 . exon 220673 221065 . + . ID=Phyra76760.3;Parent=Phyra76760;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_20 . CDS 221085 221556 . + 0 ID=Phyra76760;Parent=Phyra76760;rank=4 scaffold_20 . exon 221085 221556 . + . ID=Phyra76760.4;Parent=Phyra76760;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 ensembl protein_coding_gene 222039 224405 . + . ID=Phyra76761;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000050;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 222039 224405 . + . ID=Phyra76761;Parent=Phyra76761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 222039 224405 . + 0 ID=Phyra76761;Parent=Phyra76761;rank=1 scaffold_20 . exon 222039 224405 . + . ID=Phyra76761.1;Parent=Phyra76761;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 224559 226613 . - . ID=Phyra76762;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000051;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 224559 226613 . - . ID=Phyra76762;Parent=Phyra76762;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 224559 226613 . - 0 ID=Phyra76762;Parent=Phyra76762;rank=1 scaffold_20 . exon 224559 226613 . - . ID=Phyra76762.1;Parent=Phyra76762;constitutive=1;rank=1 scaffold_20 . exon 230702 230851 . - . ID=Phyra44056.3;Parent=Phyra44056;constitutive=1;rank=3 scaffold_20 . exon 230916 231053 . - . ID=Phyra44056.2;Parent=Phyra44056;constitutive=1;rank=2 scaffold_20 . exon 231115 231321 . - . ID=Phyra44056.1;Parent=Phyra44056;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 231599 233318 . - . ID=Phyra44058;biotype=protein_coding;external_name=gwEuk.20.9.1;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 231599 233318 . - . ID=Phyra44058;Parent=Phyra44058;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 231599 232679 . - 0 ID=Phyra44058;Parent=Phyra44058;rank=4 scaffold_20 . exon 231599 232679 . - . ID=Phyra44058.4;Parent=Phyra44058;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 . CDS 232741 232871 . - 0 ID=Phyra44058;Parent=Phyra44058;rank=3 scaffold_20 . exon 232741 232871 . - . ID=Phyra44058.3;Parent=Phyra44058;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_20 . CDS 232921 233058 . - 0 ID=Phyra44058;Parent=Phyra44058;rank=2 scaffold_20 . exon 232921 233058 . - . ID=Phyra44058.2;Parent=Phyra44058;constitutive=1;rank=2 scaffold_20 . CDS 233115 233318 . - 0 ID=Phyra44058;Parent=Phyra44058;rank=1 scaffold_20 . exon 233115 233318 . - . ID=Phyra44058.1;Parent=Phyra44058;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 233615 234643 . - . ID=Phyra44065;biotype=protein_coding;external_name=gwEuk.20.16.1;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 233615 234643 . - . ID=Phyra44065;Parent=Phyra44065;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 233615 234643 . - 0 ID=Phyra44065;Parent=Phyra44065;rank=1 scaffold_20 . exon 233615 234643 . - . ID=Phyra44065.1;Parent=Phyra44065;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 236749 239196 . + . ID=Phyra76765;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000054;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 236749 239196 . + . ID=Phyra76765;Parent=Phyra76765;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 236749 239196 . + 0 ID=Phyra76765;Parent=Phyra76765;rank=1 scaffold_20 . exon 236749 239196 . + . ID=Phyra76765.1;Parent=Phyra76765;constitutive=1;rank=1 scaffold_20 . repeat_region 241404 241415 . ? . description=dust scaffold_20 ensembl protein_coding_gene 239396 244603 . + . ID=Phyra76766;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000055;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 239396 244603 . + . ID=Phyra76766;Parent=Phyra76766;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 239396 241348 . + 0 ID=Phyra76766;Parent=Phyra76766;rank=1 scaffold_20 . exon 239396 241348 . + . ID=Phyra76766.1;Parent=Phyra76766;constitutive=1;rank=1 scaffold_20 . CDS 241656 242386 . + 0 ID=Phyra76766;Parent=Phyra76766;rank=2 scaffold_20 . exon 241656 242386 . + . ID=Phyra76766.2;Parent=Phyra76766;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_20 . CDS 242583 242619 . + 0 ID=Phyra76766;Parent=Phyra76766;rank=3 scaffold_20 . exon 242583 242619 . + . ID=Phyra76766.3;Parent=Phyra76766;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 . CDS 242853 243017 . + 0 ID=Phyra76766;Parent=Phyra76766;rank=4 scaffold_20 . exon 242853 243017 . + . ID=Phyra76766.4;Parent=Phyra76766;constitutive=1;rank=4 scaffold_20 . CDS 243075 243212 . + 0 ID=Phyra76766;Parent=Phyra76766;rank=5 scaffold_20 . exon 243075 243212 . + . ID=Phyra76766.5;Parent=Phyra76766;constitutive=1;rank=5 scaffold_20 . CDS 243283 243413 . + 0 ID=Phyra76766;Parent=Phyra76766;rank=6 scaffold_20 . exon 243283 243413 . + . ID=Phyra76766.6;Parent=Phyra76766;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_20 . CDS 243442 244603 . + 0 ID=Phyra76766;Parent=Phyra76766;rank=7 scaffold_20 . exon 243442 244603 . + . ID=Phyra76766.7;Parent=Phyra76766;constitutive=1;ensembl_phase=2;rank=7 scaffold_20 ensembl protein_coding_gene 247422 249422 . + . ID=Phyra76767;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000056;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 247422 249422 . + . ID=Phyra76767;Parent=Phyra76767;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 247422 249422 . + 0 ID=Phyra76767;Parent=Phyra76767;rank=1 scaffold_20 . exon 247422 249422 . + . ID=Phyra76767.1;Parent=Phyra76767;constitutive=1;rank=1 scaffold_20 . biological_region 249697 249700 0.999 - . logic_name=eponine scaffold_20 . biological_region 256703 256708 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 249514 251382 . + . ID=Phyra76768;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000057;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 249514 251382 . + . ID=Phyra76768;Parent=Phyra76768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 249514 251382 . + 0 ID=Phyra76768;Parent=Phyra76768;rank=1 scaffold_20 . exon 249514 251382 . + . ID=Phyra76768.1;Parent=Phyra76768;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 252968 255419 . - . ID=Phyra76769;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000058;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 252968 255419 . - . ID=Phyra76769;Parent=Phyra76769;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 252968 253486 . - 0 ID=Phyra76769;Parent=Phyra76769;rank=7 scaffold_20 . exon 252968 253486 . - . ID=Phyra76769.7;Parent=Phyra76769;constitutive=1;rank=7 scaffold_20 . CDS 253566 254142 . - 0 ID=Phyra76769;Parent=Phyra76769;rank=6 scaffold_20 . exon 253566 254142 . - . ID=Phyra76769.6;Parent=Phyra76769;constitutive=1;ensembl_phase=2;rank=6 scaffold_20 . CDS 254200 254444 . - 0 ID=Phyra76769;Parent=Phyra76769;rank=5 scaffold_20 . exon 254200 254444 . - . ID=Phyra76769.5;Parent=Phyra76769;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_20 . CDS 254512 254621 . - 0 ID=Phyra76769;Parent=Phyra76769;rank=4 scaffold_20 . exon 254512 254621 . - . ID=Phyra76769.4;Parent=Phyra76769;constitutive=1;ensembl_phase=1;rank=4 scaffold_20 . CDS 254683 254815 . - 0 ID=Phyra76769;Parent=Phyra76769;rank=3 scaffold_20 . exon 254683 254815 . - . ID=Phyra76769.3;Parent=Phyra76769;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_20 . CDS 254882 254973 . - 0 ID=Phyra76769;Parent=Phyra76769;rank=2 scaffold_20 . exon 254882 254973 . - . ID=Phyra76769.2;Parent=Phyra76769;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 255038 255419 . - 0 ID=Phyra76769;Parent=Phyra76769;rank=1 scaffold_20 . exon 255038 255419 . - . ID=Phyra76769.1;Parent=Phyra76769;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 255589 257610 . + . ID=Phyra76770;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000059;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 255589 257610 . + . ID=Phyra76770;Parent=Phyra76770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 255589 257610 . + 0 ID=Phyra76770;Parent=Phyra76770;rank=1 scaffold_20 . exon 255589 257610 . + . ID=Phyra76770.1;Parent=Phyra76770;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 257780 262229 . - . ID=Phyra76771;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000060;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 257780 262229 . - . ID=Phyra76771;Parent=Phyra76771;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 257780 259300 . - 0 ID=Phyra76771;Parent=Phyra76771;rank=7 scaffold_20 . exon 257780 259300 . - . ID=Phyra76771.7;Parent=Phyra76771;constitutive=1;rank=7 scaffold_20 . CDS 259529 259675 . - 0 ID=Phyra76771;Parent=Phyra76771;rank=6 scaffold_20 . CDS 259736 259809 . - 0 ID=Phyra76771;Parent=Phyra76771;rank=5 scaffold_20 . CDS 259972 260543 . - 0 ID=Phyra76771;Parent=Phyra76771;rank=4 scaffold_20 . CDS 260605 260629 . - 0 ID=Phyra76771;Parent=Phyra76771;rank=3 scaffold_20 . CDS 260741 261034 . - 0 ID=Phyra76771;Parent=Phyra76771;rank=2 scaffold_20 . CDS 261218 262229 . - 0 ID=Phyra76771;Parent=Phyra76771;rank=1 scaffold_20 ensembl protein_coding_gene 251437 251643 . - . ID=Phyra94610;biotype=protein_coding;external_name=C_scaffold_20000019;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 251437 251643 . - . ID=Phyra94610;Parent=Phyra94610;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 251437 251643 . - 0 ID=Phyra94610;Parent=Phyra94610;rank=1 scaffold_20 . exon 251437 251643 . - . ID=Phyra94610.1;Parent=Phyra94610;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 252135 252597 . + . ID=Phyra94611;biotype=protein_coding;external_name=C_scaffold_20000020;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 252135 252597 . + . ID=Phyra94611;Parent=Phyra94611;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 252135 252329 . + 0 ID=Phyra94611;Parent=Phyra94611;rank=1 scaffold_20 . exon 252135 252329 . + . ID=Phyra94611.1;Parent=Phyra94611;constitutive=1;rank=1 scaffold_20 . CDS 252583 252597 . + 0 ID=Phyra94611;Parent=Phyra94611;rank=2 scaffold_20 . exon 252583 252597 . + . ID=Phyra94611.2;Parent=Phyra94611;constitutive=1;rank=2 scaffold_20 . repeat_region 262332 262390 . ? . description=trf scaffold_20 . repeat_region 264495 264525 . ? . description=trf scaffold_20 . exon 259529 259675 . - . ID=Phyra76771.6;Parent=Phyra76771;constitutive=1;rank=6 scaffold_20 . exon 259736 259809 . - . ID=Phyra76771.5;Parent=Phyra76771;constitutive=1;ensembl_phase=1;rank=5 scaffold_20 . exon 259972 260543 . - . ID=Phyra76771.4;Parent=Phyra76771;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_20 . exon 260605 260629 . - . ID=Phyra76771.3;Parent=Phyra76771;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_20 . exon 260741 261034 . - . ID=Phyra76771.2;Parent=Phyra76771;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_20 . exon 261218 262229 . - . ID=Phyra76771.1;Parent=Phyra76771;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 262415 263391 . + . ID=Phyra76772;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000061;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 262415 263391 . + . ID=Phyra76772;Parent=Phyra76772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 262415 262568 . + 0 ID=Phyra76772;Parent=Phyra76772;rank=1 scaffold_20 . exon 262415 262568 . + . ID=Phyra76772.1;Parent=Phyra76772;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 262641 262801 . + 0 ID=Phyra76772;Parent=Phyra76772;rank=2 scaffold_20 . exon 262641 262801 . + . ID=Phyra76772.2;Parent=Phyra76772;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 262864 263391 . + 0 ID=Phyra76772;Parent=Phyra76772;rank=3 scaffold_20 . exon 262864 263391 . + . ID=Phyra76772.3;Parent=Phyra76772;constitutive=1;rank=3 scaffold_20 ensembl protein_coding_gene 263465 264759 . - . ID=Phyra76773;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000062;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 263465 264759 . - . ID=Phyra76773;Parent=Phyra76773;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 263465 263658 . - 0 ID=Phyra76773;Parent=Phyra76773;rank=2 scaffold_20 . exon 263465 263658 . - . ID=Phyra76773.2;Parent=Phyra76773;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 263718 264759 . - 0 ID=Phyra76773;Parent=Phyra76773;rank=1 scaffold_20 . exon 263718 264759 . - . ID=Phyra76773.1;Parent=Phyra76773;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 264984 265775 . + . ID=Phyra76774;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000063;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 264984 265775 . + . ID=Phyra76774;Parent=Phyra76774;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 264984 265775 . + 0 ID=Phyra76774;Parent=Phyra76774;rank=1 scaffold_20 . exon 264984 265775 . + . ID=Phyra76774.1;Parent=Phyra76774;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 265968 269120 . - . ID=Phyra76775;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000064;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 265968 269120 . - . ID=Phyra76775;Parent=Phyra76775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 265968 268295 . - 0 ID=Phyra76775;Parent=Phyra76775;rank=3 scaffold_20 . exon 265968 268295 . - . ID=Phyra76775.3;Parent=Phyra76775;constitutive=1;rank=3 scaffold_20 . CDS 268526 268643 . - 0 ID=Phyra76775;Parent=Phyra76775;rank=2 scaffold_20 . CDS 268846 269120 . - 0 ID=Phyra76775;Parent=Phyra76775;rank=1 scaffold_20 . repeat_region 271525 271544 . ? . description=dust scaffold_20 ensembl protein_coding_gene 275527 278795 . - . ID=Phyra44077;biotype=protein_coding;external_name=gwEuk.20.28.1;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 275527 278795 . - . ID=Phyra44077;Parent=Phyra44077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 275527 276445 . - 0 ID=Phyra44077;Parent=Phyra44077;rank=5 scaffold_20 . exon 275527 276445 . - . ID=Phyra44077.5;Parent=Phyra44077;constitutive=1;ensembl_phase=2;rank=5 scaffold_20 . CDS 276719 276944 . - 0 ID=Phyra44077;Parent=Phyra44077;rank=4 scaffold_20 . exon 276719 276944 . - . ID=Phyra44077.4;Parent=Phyra44077;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_20 . CDS 277013 278249 . - 0 ID=Phyra44077;Parent=Phyra44077;rank=3 scaffold_20 . exon 277013 278249 . - . ID=Phyra44077.3;Parent=Phyra44077;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_20 . CDS 278316 278618 . - 0 ID=Phyra44077;Parent=Phyra44077;rank=2 scaffold_20 . CDS 278700 278795 . - 0 ID=Phyra44077;Parent=Phyra44077;rank=1 scaffold_20 ensembl protein_coding_gene 271935 275174 . - . ID=Phyra71447;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_20000005;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 271935 275174 . - . ID=Phyra71447;Parent=Phyra71447;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 271935 272729 . - 0 ID=Phyra71447;Parent=Phyra71447;rank=5 scaffold_20 . exon 271935 272729 . - . ID=Phyra71447.5;Parent=Phyra71447;constitutive=1;rank=5 scaffold_20 . CDS 272801 272906 . - 0 ID=Phyra71447;Parent=Phyra71447;rank=4 scaffold_20 . exon 272801 272906 . - . ID=Phyra71447.4;Parent=Phyra71447;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 . CDS 272983 273947 . - 0 ID=Phyra71447;Parent=Phyra71447;rank=3 scaffold_20 . exon 272983 273947 . - . ID=Phyra71447.3;Parent=Phyra71447;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_20 . CDS 274024 274395 . - 0 ID=Phyra71447;Parent=Phyra71447;rank=2 scaffold_20 . exon 274024 274395 . - . ID=Phyra71447.2;Parent=Phyra71447;constitutive=1;rank=2 scaffold_20 . CDS 274461 275174 . - 0 ID=Phyra71447;Parent=Phyra71447;rank=1 scaffold_20 . exon 274461 275174 . - . ID=Phyra71447.1;Parent=Phyra71447;constitutive=1;rank=1 scaffold_20 . exon 268526 268643 . - . ID=Phyra76775.2;Parent=Phyra76775;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . exon 268846 269120 . - . ID=Phyra76775.1;Parent=Phyra76775;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . biological_region 280949 280950 0.999 + . logic_name=eponine scaffold_20 . biological_region 286268 286270 0.999 + . logic_name=eponine scaffold_20 . biological_region 286350 286350 0.999 - . logic_name=eponine scaffold_20 . biological_region 287420 287427 0.999 - . logic_name=eponine scaffold_20 . biological_region 287977 287979 0.999 - . logic_name=eponine scaffold_20 . exon 278316 278618 . - . ID=Phyra44077.2;Parent=Phyra44077;constitutive=1;rank=2 scaffold_20 . exon 278700 278795 . - . ID=Phyra44077.1;Parent=Phyra44077;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 279123 280103 . - . ID=Phyra76778;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000067;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 279123 280103 . - . ID=Phyra76778;Parent=Phyra76778;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 279123 280103 . - 0 ID=Phyra76778;Parent=Phyra76778;rank=1 scaffold_20 . exon 279123 280103 . - . ID=Phyra76778.1;Parent=Phyra76778;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 283814 285205 . + . ID=Phyra76780;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000069;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 283814 285205 . + . ID=Phyra76780;Parent=Phyra76780;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 283814 284331 . + 0 ID=Phyra76780;Parent=Phyra76780;rank=1 scaffold_20 . exon 283814 284331 . + . ID=Phyra76780.1;Parent=Phyra76780;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 284392 284606 . + 0 ID=Phyra76780;Parent=Phyra76780;rank=2 scaffold_20 . exon 284392 284606 . + . ID=Phyra76780.2;Parent=Phyra76780;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 284637 285205 . + 0 ID=Phyra76780;Parent=Phyra76780;rank=3 scaffold_20 . exon 284637 285205 . + . ID=Phyra76780.3;Parent=Phyra76780;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 ensembl protein_coding_gene 282201 282692 . - . ID=Phyra94618;biotype=protein_coding;external_name=C_scaffold_20000027;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 282201 282692 . - . ID=Phyra94618;Parent=Phyra94618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 282201 282692 . - 0 ID=Phyra94618;Parent=Phyra94618;rank=1 scaffold_20 . exon 282201 282692 . - . ID=Phyra94618.1;Parent=Phyra94618;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 282904 283663 . - . ID=Phyra94619;biotype=protein_coding;external_name=C_scaffold_20000028;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 282904 283663 . - . ID=Phyra94619;Parent=Phyra94619;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 282904 283118 . - 0 ID=Phyra94619;Parent=Phyra94619;rank=3 scaffold_20 . exon 282904 283118 . - . ID=Phyra94619.3;Parent=Phyra94619;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 283215 283451 . - 0 ID=Phyra94619;Parent=Phyra94619;rank=2 scaffold_20 . exon 283215 283451 . - . ID=Phyra94619.2;Parent=Phyra94619;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 283549 283663 . - 0 ID=Phyra94619;Parent=Phyra94619;rank=1 scaffold_20 . exon 283549 283663 . - . ID=Phyra94619.1;Parent=Phyra94619;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 285320 285667 . - . ID=Phyra94621;biotype=protein_coding;external_name=C_scaffold_20000030;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 285320 285667 . - . ID=Phyra94621;Parent=Phyra94621;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 285320 285667 . - 0 ID=Phyra94621;Parent=Phyra94621;rank=1 scaffold_20 . exon 285320 285667 . - . ID=Phyra94621.1;Parent=Phyra94621;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 287212 288954 . + . ID=Phyra94623;biotype=protein_coding;external_name=C_scaffold_20000032;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 287212 288954 . + . ID=Phyra94623;Parent=Phyra94623;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 287212 287967 . + 0 ID=Phyra94623;Parent=Phyra94623;rank=1 scaffold_20 . exon 287212 287967 . + . ID=Phyra94623.1;Parent=Phyra94623;constitutive=1;rank=1 scaffold_20 . CDS 288751 288954 . + 0 ID=Phyra94623;Parent=Phyra94623;rank=2 scaffold_20 . repeat_region 297666 297673 . ? . description=dust scaffold_20 ensembl protein_coding_gene 289119 291109 . - . ID=Phyra76783;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000072;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 289119 291109 . - . ID=Phyra76783;Parent=Phyra76783;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 289119 289217 . - 0 ID=Phyra76783;Parent=Phyra76783;rank=9 scaffold_20 . exon 289119 289217 . - . ID=Phyra76783.9;Parent=Phyra76783;constitutive=1;rank=9 scaffold_20 . CDS 289287 289443 . - 0 ID=Phyra76783;Parent=Phyra76783;rank=8 scaffold_20 . exon 289287 289443 . - . ID=Phyra76783.8;Parent=Phyra76783;constitutive=1;ensembl_phase=2;rank=8 scaffold_20 . CDS 289506 289606 . - 0 ID=Phyra76783;Parent=Phyra76783;rank=7 scaffold_20 . exon 289506 289606 . - . ID=Phyra76783.7;Parent=Phyra76783;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_20 . CDS 289685 289735 . - 0 ID=Phyra76783;Parent=Phyra76783;rank=6 scaffold_20 . exon 289685 289735 . - . ID=Phyra76783.6;Parent=Phyra76783;constitutive=1;rank=6 scaffold_20 . CDS 289817 289975 . - 0 ID=Phyra76783;Parent=Phyra76783;rank=5 scaffold_20 . exon 289817 289975 . - . ID=Phyra76783.5;Parent=Phyra76783;constitutive=1;rank=5 scaffold_20 . CDS 290038 290268 . - 0 ID=Phyra76783;Parent=Phyra76783;rank=4 scaffold_20 . exon 290038 290268 . - . ID=Phyra76783.4;Parent=Phyra76783;constitutive=1;rank=4 scaffold_20 . CDS 290338 290420 . - 0 ID=Phyra76783;Parent=Phyra76783;rank=3 scaffold_20 . exon 290338 290420 . - . ID=Phyra76783.3;Parent=Phyra76783;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 290492 290594 . - 0 ID=Phyra76783;Parent=Phyra76783;rank=2 scaffold_20 . exon 290492 290594 . - . ID=Phyra76783.2;Parent=Phyra76783;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_20 . CDS 290657 291109 . - 0 ID=Phyra76783;Parent=Phyra76783;rank=1 scaffold_20 . exon 290657 291109 . - . ID=Phyra76783.1;Parent=Phyra76783;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 291434 292660 . - . ID=Phyra76784;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000073;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 291434 292660 . - . ID=Phyra76784;Parent=Phyra76784;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 291434 292660 . - 0 ID=Phyra76784;Parent=Phyra76784;rank=1 scaffold_20 . exon 291434 292660 . - . ID=Phyra76784.1;Parent=Phyra76784;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 293253 294404 . + . ID=Phyra76785;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000074;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 293253 294404 . + . ID=Phyra76785;Parent=Phyra76785;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 293253 294404 . + 0 ID=Phyra76785;Parent=Phyra76785;rank=1 scaffold_20 . exon 293253 294404 . + . ID=Phyra76785.1;Parent=Phyra76785;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 294882 295829 . + . ID=Phyra76786;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000075;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 294882 295829 . + . ID=Phyra76786;Parent=Phyra76786;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 294882 295829 . + 0 ID=Phyra76786;Parent=Phyra76786;rank=1 scaffold_20 . exon 294882 295829 . + . ID=Phyra76786.1;Parent=Phyra76786;constitutive=1;rank=1 scaffold_20 . exon 288751 288954 . + . ID=Phyra94623.2;Parent=Phyra94623;constitutive=1;rank=2 scaffold_20 . biological_region 304613 304614 0.999 + . logic_name=eponine scaffold_20 . biological_region 306405 306409 0.999 + . logic_name=eponine scaffold_20 . biological_region 307147 307149 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 303588 304061 . + . ID=Phyra76787;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000076;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 303588 304061 . + . ID=Phyra76787;Parent=Phyra76787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 303588 304061 . + 0 ID=Phyra76787;Parent=Phyra76787;rank=1 scaffold_20 . exon 303588 304061 . + . ID=Phyra76787.1;Parent=Phyra76787;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 304216 307251 . - . ID=Phyra76788;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000077;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 304216 307251 . - . ID=Phyra76788;Parent=Phyra76788;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 304216 307251 . - 0 ID=Phyra76788;Parent=Phyra76788;rank=1 scaffold_20 . exon 304216 307251 . - . ID=Phyra76788.1;Parent=Phyra76788;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 307683 308277 . + . ID=Phyra76789;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000078;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 307683 308277 . + . ID=Phyra76789;Parent=Phyra76789;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 307683 308066 . + 0 ID=Phyra76789;Parent=Phyra76789;rank=1 scaffold_20 . exon 307683 308066 . + . ID=Phyra76789.1;Parent=Phyra76789;constitutive=1;rank=1 scaffold_20 . CDS 308143 308277 . + 0 ID=Phyra76789;Parent=Phyra76789;rank=2 scaffold_20 . repeat_region 310630 310657 . ? . description=trf scaffold_20 . repeat_region 317166 317179 . ? . description=dust scaffold_20 . exon 308143 308277 . + . ID=Phyra76789.2;Parent=Phyra76789;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 308680 311183 . + . ID=Phyra76790;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000079;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 308680 311183 . + . ID=Phyra76790;Parent=Phyra76790;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 308680 308739 . + 0 ID=Phyra76790;Parent=Phyra76790;rank=1 scaffold_20 . exon 308680 308739 . + . ID=Phyra76790.1;Parent=Phyra76790;constitutive=1;rank=1 scaffold_20 . CDS 308886 311183 . + 0 ID=Phyra76790;Parent=Phyra76790;rank=2 scaffold_20 . exon 308886 311183 . + . ID=Phyra76790.2;Parent=Phyra76790;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 314539 318284 . - . ID=Phyra94627;biotype=protein_coding;external_name=C_scaffold_20000036;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 314539 318284 . - . ID=Phyra94627;Parent=Phyra94627;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 314539 314694 . - 0 ID=Phyra94627;Parent=Phyra94627;rank=11 scaffold_20 . exon 314539 314694 . - . ID=Phyra94627.11;Parent=Phyra94627;constitutive=1;rank=11 scaffold_20 . CDS 314781 315094 . - 0 ID=Phyra94627;Parent=Phyra94627;rank=10 scaffold_20 . exon 314781 315094 . - . ID=Phyra94627.10;Parent=Phyra94627;constitutive=1;ensembl_phase=1;rank=10 scaffold_20 . CDS 315191 316274 . - 0 ID=Phyra94627;Parent=Phyra94627;rank=9 scaffold_20 . exon 315191 316274 . - . ID=Phyra94627.9;Parent=Phyra94627;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_20 . CDS 316341 316532 . - 0 ID=Phyra94627;Parent=Phyra94627;rank=8 scaffold_20 . exon 316341 316532 . - . ID=Phyra94627.8;Parent=Phyra94627;constitutive=1;rank=8 scaffold_20 . CDS 316607 316697 . - 0 ID=Phyra94627;Parent=Phyra94627;rank=7 scaffold_20 . exon 316607 316697 . - . ID=Phyra94627.7;Parent=Phyra94627;constitutive=1;ensembl_phase=2;rank=7 scaffold_20 . CDS 316769 316855 . - 0 ID=Phyra94627;Parent=Phyra94627;rank=6 scaffold_20 . exon 316769 316855 . - . ID=Phyra94627.6;Parent=Phyra94627;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_20 . CDS 316915 317150 . - 0 ID=Phyra94627;Parent=Phyra94627;rank=5 scaffold_20 . exon 316915 317150 . - . ID=Phyra94627.5;Parent=Phyra94627;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_20 . CDS 317213 317379 . - 0 ID=Phyra94627;Parent=Phyra94627;rank=4 scaffold_20 . exon 317213 317379 . - . ID=Phyra94627.4;Parent=Phyra94627;constitutive=1;ensembl_phase=1;rank=4 scaffold_20 . CDS 317829 317999 . - 0 ID=Phyra94627;Parent=Phyra94627;rank=3 scaffold_20 . exon 317829 317999 . - . ID=Phyra94627.3;Parent=Phyra94627;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 318062 318161 . - 0 ID=Phyra94627;Parent=Phyra94627;rank=2 scaffold_20 . CDS 318189 318284 . - 0 ID=Phyra94627;Parent=Phyra94627;rank=1 scaffold_20 ensembl protein_coding_gene 318655 319062 . + . ID=Phyra71448;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_20000006;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 318655 319062 . + . ID=Phyra71448;Parent=Phyra71448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 318655 319062 . + 0 ID=Phyra71448;Parent=Phyra71448;rank=1 scaffold_20 . exon 318655 319062 . + . ID=Phyra71448.1;Parent=Phyra71448;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 321870 324135 . - . ID=Phyra76793;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000082;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 321870 324135 . - . ID=Phyra76793;Parent=Phyra76793;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 321870 322410 . - 0 ID=Phyra76793;Parent=Phyra76793;rank=11 scaffold_20 . exon 321870 322410 . - . ID=Phyra76793.11;Parent=Phyra76793;constitutive=1;ensembl_phase=2;rank=11 scaffold_20 . CDS 322473 322555 . - 0 ID=Phyra76793;Parent=Phyra76793;rank=10 scaffold_20 . exon 322473 322555 . - . ID=Phyra76793.10;Parent=Phyra76793;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_20 . CDS 322623 322648 . - 0 ID=Phyra76793;Parent=Phyra76793;rank=9 scaffold_20 . exon 322623 322648 . - . ID=Phyra76793.9;Parent=Phyra76793;constitutive=1;ensembl_phase=1;rank=9 scaffold_20 . CDS 322685 322767 . - 0 ID=Phyra76793;Parent=Phyra76793;rank=8 scaffold_20 . exon 322685 322767 . - . ID=Phyra76793.8;Parent=Phyra76793;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_20 . CDS 322837 322922 . - 0 ID=Phyra76793;Parent=Phyra76793;rank=7 scaffold_20 . exon 322837 322922 . - . ID=Phyra76793.7;Parent=Phyra76793;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_20 . CDS 322996 323145 . - 0 ID=Phyra76793;Parent=Phyra76793;rank=6 scaffold_20 . exon 322996 323145 . - . ID=Phyra76793.6;Parent=Phyra76793;constitutive=1;rank=6 scaffold_20 . CDS 323214 323315 . - 0 ID=Phyra76793;Parent=Phyra76793;rank=5 scaffold_20 . exon 323214 323315 . - . ID=Phyra76793.5;Parent=Phyra76793;constitutive=1;rank=5 scaffold_20 . CDS 323345 323417 . - 0 ID=Phyra76793;Parent=Phyra76793;rank=4 scaffold_20 . exon 323345 323417 . - . ID=Phyra76793.4;Parent=Phyra76793;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 . CDS 323478 323548 . - 0 ID=Phyra76793;Parent=Phyra76793;rank=3 scaffold_20 . exon 323478 323548 . - . ID=Phyra76793.3;Parent=Phyra76793;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_20 . CDS 323621 323731 . - 0 ID=Phyra76793;Parent=Phyra76793;rank=2 scaffold_20 . exon 323621 323731 . - . ID=Phyra76793.2;Parent=Phyra76793;constitutive=1;rank=2 scaffold_20 . CDS 323800 324135 . - 0 ID=Phyra76793;Parent=Phyra76793;rank=1 scaffold_20 . exon 323800 324135 . - . ID=Phyra76793.1;Parent=Phyra76793;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 326583 328149 . - . ID=Phyra76794;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000083;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 326583 328149 . - . ID=Phyra76794;Parent=Phyra76794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 326583 326620 . - 0 ID=Phyra76794;Parent=Phyra76794;rank=2 scaffold_20 . exon 326583 326620 . - . ID=Phyra76794.2;Parent=Phyra76794;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 326763 328149 . - 0 ID=Phyra76794;Parent=Phyra76794;rank=1 scaffold_20 . exon 326763 328149 . - . ID=Phyra76794.1;Parent=Phyra76794;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . exon 318062 318161 . - . ID=Phyra94627.2;Parent=Phyra94627;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_20 . exon 318189 318284 . - . ID=Phyra94627.1;Parent=Phyra94627;constitutive=1;rank=1 scaffold_20 . biological_region 328565 328567 0.999 + . logic_name=eponine scaffold_20 . biological_region 329146 329148 0.999 - . logic_name=eponine scaffold_20 . biological_region 329381 329385 0.999 + . logic_name=eponine scaffold_20 . biological_region 334688 334690 0.999 + . logic_name=eponine scaffold_20 . repeat_region 336647 336727 . ? . description=trf scaffold_20 ensembl protein_coding_gene 328383 331118 . + . ID=Phyra76795;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000084;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 328383 331118 . + . ID=Phyra76795;Parent=Phyra76795;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 328383 331118 . + 0 ID=Phyra76795;Parent=Phyra76795;rank=1 scaffold_20 . exon 328383 331118 . + . ID=Phyra76795.1;Parent=Phyra76795;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 331691 336223 . - . ID=Phyra76796;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000085;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 331691 336223 . - . ID=Phyra76796;Parent=Phyra76796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 331691 332082 . - 0 ID=Phyra76796;Parent=Phyra76796;rank=6 scaffold_20 . exon 331691 332082 . - . ID=Phyra76796.6;Parent=Phyra76796;constitutive=1;ensembl_phase=1;rank=6 scaffold_20 . CDS 332299 332850 . - 0 ID=Phyra76796;Parent=Phyra76796;rank=5 scaffold_20 . exon 332299 332850 . - . ID=Phyra76796.5;Parent=Phyra76796;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_20 . CDS 332943 333093 . - 0 ID=Phyra76796;Parent=Phyra76796;rank=4 scaffold_20 . exon 332943 333093 . - . ID=Phyra76796.4;Parent=Phyra76796;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_20 . CDS 333159 335439 . - 0 ID=Phyra76796;Parent=Phyra76796;rank=3 scaffold_20 . exon 333159 335439 . - . ID=Phyra76796.3;Parent=Phyra76796;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 . CDS 335693 335875 . - 0 ID=Phyra76796;Parent=Phyra76796;rank=2 scaffold_20 . exon 335693 335875 . - . ID=Phyra76796.2;Parent=Phyra76796;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_20 . CDS 336087 336223 . - 0 ID=Phyra76796;Parent=Phyra76796;rank=1 scaffold_20 . exon 336087 336223 . - . ID=Phyra76796.1;Parent=Phyra76796;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 339856 350349 . + . ID=Phyra94629;biotype=protein_coding;external_name=C_scaffold_20000038;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 339856 350349 . + . ID=Phyra94629;Parent=Phyra94629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 339856 340275 . + 0 ID=Phyra94629;Parent=Phyra94629;rank=1 scaffold_20 . exon 339856 340275 . + . ID=Phyra94629.1;Parent=Phyra94629;constitutive=1;rank=1 scaffold_20 . CDS 340324 345688 . + 0 ID=Phyra94629;Parent=Phyra94629;rank=2 scaffold_20 . exon 340324 345688 . + . ID=Phyra94629.2;Parent=Phyra94629;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_20 . CDS 345785 347899 . + 0 ID=Phyra94629;Parent=Phyra94629;rank=3 scaffold_20 . exon 345785 347899 . + . ID=Phyra94629.3;Parent=Phyra94629;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 347975 349787 . + 0 ID=Phyra94629;Parent=Phyra94629;rank=4 scaffold_20 . CDS 349875 350349 . + 0 ID=Phyra94629;Parent=Phyra94629;rank=5 scaffold_20 . biological_region 350847 350851 0.999 - . logic_name=eponine scaffold_20 . biological_region 352788 352791 0.999 + . logic_name=eponine scaffold_20 . biological_region 353987 353990 0.999 - . logic_name=eponine scaffold_20 . biological_region 354350 354350 0.999 + . logic_name=eponine scaffold_20 . biological_region 354485 354488 0.999 - . logic_name=eponine scaffold_20 . biological_region 355147 355148 0.999 + . logic_name=eponine scaffold_20 . repeat_region 356156 356214 . ? . description=dust scaffold_20 . biological_region 356442 356443 0.999 - . logic_name=eponine scaffold_20 . biological_region 357331 357333 0.999 + . logic_name=eponine scaffold_20 . repeat_region 357659 357798 . ? . description=trf scaffold_20 . repeat_region 357662 357806 . ? . description=trf scaffold_20 . repeat_region 357662 357806 . ? . description=dust scaffold_20 . repeat_region 357663 357805 . ? . description=trf scaffold_20 ensembl protein_coding_gene 353468 353986 . + . ID=Phyra76800;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000089;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 353468 353986 . + . ID=Phyra76800;Parent=Phyra76800;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 353468 353986 . + 0 ID=Phyra76800;Parent=Phyra76800;rank=1 scaffold_20 . exon 353468 353986 . + . ID=Phyra76800.1;Parent=Phyra76800;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 356124 357941 . + . ID=Phyra76801;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000090;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 356124 357941 . + . ID=Phyra76801;Parent=Phyra76801;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 356124 357941 . + 0 ID=Phyra76801;Parent=Phyra76801;rank=1 scaffold_20 . exon 356124 357941 . + . ID=Phyra76801.1;Parent=Phyra76801;constitutive=1;rank=1 scaffold_20 . exon 347975 349787 . + . ID=Phyra94629.4;Parent=Phyra94629;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_20 . exon 349875 350349 . + . ID=Phyra94629.5;Parent=Phyra94629;constitutive=1;ensembl_phase=2;rank=5 scaffold_20 ensembl protein_coding_gene 367628 369413 . - . ID=Phyra44104;biotype=protein_coding;external_name=gwEuk.20.55.1;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 367628 369413 . - . ID=Phyra44104;Parent=Phyra44104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 367628 369088 . - 0 ID=Phyra44104;Parent=Phyra44104;rank=2 scaffold_20 . exon 367628 369088 . - . ID=Phyra44104.2;Parent=Phyra44104;constitutive=1;rank=2 scaffold_20 . CDS 369192 369413 . - 0 ID=Phyra44104;Parent=Phyra44104;rank=1 scaffold_20 ensembl protein_coding_gene 358426 359709 . + . ID=Phyra76802;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000091;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 358426 359709 . + . ID=Phyra76802;Parent=Phyra76802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 358426 359709 . + 0 ID=Phyra76802;Parent=Phyra76802;rank=1 scaffold_20 . exon 358426 359709 . + . ID=Phyra76802.1;Parent=Phyra76802;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 363890 366415 . + . ID=Phyra76803;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000092;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 363890 366415 . + . ID=Phyra76803;Parent=Phyra76803;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 363890 364071 . + 0 ID=Phyra76803;Parent=Phyra76803;rank=1 scaffold_20 . exon 363890 364071 . + . ID=Phyra76803.1;Parent=Phyra76803;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 364189 366415 . + 0 ID=Phyra76803;Parent=Phyra76803;rank=2 scaffold_20 . exon 364189 366415 . + . ID=Phyra76803.2;Parent=Phyra76803;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . biological_region 369343 369347 0.999 + . logic_name=eponine scaffold_20 . biological_region 369780 369784 0.999 - . logic_name=eponine scaffold_20 . repeat_region 370058 370066 . ? . description=dust scaffold_20 . biological_region 376114 376114 0.999 - . logic_name=eponine scaffold_20 . biological_region 376176 376179 0.999 - . logic_name=eponine scaffold_20 . exon 369192 369413 . - . ID=Phyra44104.1;Parent=Phyra44104;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 375139 377733 . + . ID=Phyra44111;biotype=protein_coding;external_name=gwEuk.20.62.1;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 375139 377733 . + . ID=Phyra44111;Parent=Phyra44111;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 375139 376473 . + 0 ID=Phyra44111;Parent=Phyra44111;rank=1 scaffold_20 . exon 375139 376473 . + . ID=Phyra44111.1;Parent=Phyra44111;constitutive=1;rank=1 scaffold_20 . CDS 376565 376730 . + 0 ID=Phyra44111;Parent=Phyra44111;rank=2 scaffold_20 . exon 376565 376730 . + . ID=Phyra44111.2;Parent=Phyra44111;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_20 . CDS 376801 377148 . + 0 ID=Phyra44111;Parent=Phyra44111;rank=3 scaffold_20 . exon 376801 377148 . + . ID=Phyra44111.3;Parent=Phyra44111;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 377423 377733 . + 0 ID=Phyra44111;Parent=Phyra44111;rank=4 scaffold_20 . exon 377423 377733 . + . ID=Phyra44111.4;Parent=Phyra44111;constitutive=1;ensembl_phase=1;rank=4 scaffold_20 ensembl protein_coding_gene 369554 369885 . + . ID=Phyra71451;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_20000009;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 369554 369885 . + . ID=Phyra71451;Parent=Phyra71451;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 369554 369782 . + 0 ID=Phyra71451;Parent=Phyra71451;rank=1 scaffold_20 . exon 369554 369782 . + . ID=Phyra71451.1;Parent=Phyra71451;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 369860 369885 . + 0 ID=Phyra71451;Parent=Phyra71451;rank=2 scaffold_20 . exon 369860 369885 . + . ID=Phyra71451.2;Parent=Phyra71451;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 ensembl protein_coding_gene 379524 380113 . + . ID=Phyra44115;biotype=protein_coding;external_name=gwEuk.20.66.1;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 379524 380113 . + . ID=Phyra44115;Parent=Phyra44115;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 379524 379624 . + 0 ID=Phyra44115;Parent=Phyra44115;rank=1 scaffold_20 . exon 379524 379624 . + . ID=Phyra44115.1;Parent=Phyra44115;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 379694 379893 . + 0 ID=Phyra44115;Parent=Phyra44115;rank=2 scaffold_20 . exon 379694 379893 . + . ID=Phyra44115.2;Parent=Phyra44115;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 379959 380113 . + 0 ID=Phyra44115;Parent=Phyra44115;rank=3 scaffold_20 . exon 379959 380113 . + . ID=Phyra44115.3;Parent=Phyra44115;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 ensembl protein_coding_gene 382852 384682 . - . ID=Phyra71452;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_20000010;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 382852 384682 . - . ID=Phyra71452;Parent=Phyra71452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 382852 383610 . - 0 ID=Phyra71452;Parent=Phyra71452;rank=4 scaffold_20 . exon 382852 383610 . - . ID=Phyra71452.4;Parent=Phyra71452;constitutive=1;rank=4 scaffold_20 . CDS 383689 383772 . - 0 ID=Phyra71452;Parent=Phyra71452;rank=3 scaffold_20 . exon 383689 383772 . - . ID=Phyra71452.3;Parent=Phyra71452;constitutive=1;rank=3 scaffold_20 . CDS 383816 384280 . - 0 ID=Phyra71452;Parent=Phyra71452;rank=2 scaffold_20 . exon 383816 384280 . - . ID=Phyra71452.2;Parent=Phyra71452;constitutive=1;rank=2 scaffold_20 . CDS 384353 384682 . - 0 ID=Phyra71452;Parent=Phyra71452;rank=1 scaffold_20 . exon 384353 384682 . - . ID=Phyra71452.1;Parent=Phyra71452;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 382319 382749 . + . ID=Phyra76808;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000097;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 382319 382749 . + . ID=Phyra76808;Parent=Phyra76808;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 382319 382749 . + 0 ID=Phyra76808;Parent=Phyra76808;rank=1 scaffold_20 . exon 382319 382749 . + . ID=Phyra76808.1;Parent=Phyra76808;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 385694 386412 . + . ID=Phyra76810;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000099;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 385694 386412 . + . ID=Phyra76810;Parent=Phyra76810;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 385694 386377 . + 0 ID=Phyra76810;Parent=Phyra76810;rank=1 scaffold_20 . exon 385694 386377 . + . ID=Phyra76810.1;Parent=Phyra76810;constitutive=1;rank=1 scaffold_20 . CDS 386407 386412 . + 0 ID=Phyra76810;Parent=Phyra76810;rank=2 scaffold_20 . exon 386407 386412 . + . ID=Phyra76810.2;Parent=Phyra76810;constitutive=1;rank=2 scaffold_20 . repeat_region 389604 389616 . ? . description=dust scaffold_20 . biological_region 390256 390256 0.999 - . logic_name=eponine scaffold_20 . biological_region 390853 390854 0.999 + . logic_name=eponine scaffold_20 . repeat_region 394836 394843 . ? . description=dust scaffold_20 . repeat_region 397114 397159 . ? . description=trf scaffold_20 . repeat_region 397199 397251 . ? . description=dust scaffold_20 . repeat_region 397216 397248 . ? . description=trf scaffold_20 . repeat_region 397216 397251 . ? . description=trf scaffold_20 . repeat_region 397216 397252 . ? . description=trf scaffold_20 ensembl protein_coding_gene 390112 393423 . + . ID=Phyra76812;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000101;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 390112 393423 . + . ID=Phyra76812;Parent=Phyra76812;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 390112 393423 . + 0 ID=Phyra76812;Parent=Phyra76812;rank=1 scaffold_20 . exon 390112 393423 . + . ID=Phyra76812.1;Parent=Phyra76812;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 394917 395969 . - . ID=Phyra76813;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000102;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 394917 395969 . - . ID=Phyra76813;Parent=Phyra76813;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 394917 395201 . - 0 ID=Phyra76813;Parent=Phyra76813;rank=2 scaffold_20 . exon 394917 395201 . - . ID=Phyra76813.2;Parent=Phyra76813;constitutive=1;rank=2 scaffold_20 . CDS 395274 395969 . - 0 ID=Phyra76813;Parent=Phyra76813;rank=1 scaffold_20 . exon 395274 395969 . - . ID=Phyra76813.1;Parent=Phyra76813;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 396109 397324 . + . ID=Phyra76814;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000103;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 396109 397324 . + . ID=Phyra76814;Parent=Phyra76814;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 396109 396219 . + 0 ID=Phyra76814;Parent=Phyra76814;rank=1 scaffold_20 . exon 396109 396219 . + . ID=Phyra76814.1;Parent=Phyra76814;constitutive=1;rank=1 scaffold_20 . CDS 396285 396597 . + 0 ID=Phyra76814;Parent=Phyra76814;rank=2 scaffold_20 . exon 396285 396597 . + . ID=Phyra76814.2;Parent=Phyra76814;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_20 . CDS 396670 396728 . + 0 ID=Phyra76814;Parent=Phyra76814;rank=3 scaffold_20 . exon 396670 396728 . + . ID=Phyra76814.3;Parent=Phyra76814;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 396795 396857 . + 0 ID=Phyra76814;Parent=Phyra76814;rank=4 scaffold_20 . exon 396795 396857 . + . ID=Phyra76814.4;Parent=Phyra76814;constitutive=1;rank=4 scaffold_20 . CDS 396935 397324 . + 0 ID=Phyra76814;Parent=Phyra76814;rank=5 scaffold_20 . exon 396935 397324 . + . ID=Phyra76814.5;Parent=Phyra76814;constitutive=1;rank=5 scaffold_20 ensembl protein_coding_gene 387968 388616 . + . ID=Phyra94630;biotype=protein_coding;external_name=C_scaffold_20000039;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 387968 388616 . + . ID=Phyra94630;Parent=Phyra94630;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 387968 387976 . + 0 ID=Phyra94630;Parent=Phyra94630;rank=1 scaffold_20 . exon 387968 387976 . + . ID=Phyra94630.1;Parent=Phyra94630;constitutive=1;rank=1 scaffold_20 . CDS 388177 388427 . + 0 ID=Phyra94630;Parent=Phyra94630;rank=2 scaffold_20 . exon 388177 388427 . + . ID=Phyra94630.2;Parent=Phyra94630;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_20 . CDS 388505 388616 . + 0 ID=Phyra94630;Parent=Phyra94630;rank=3 scaffold_20 . exon 388505 388616 . + . ID=Phyra94630.3;Parent=Phyra94630;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 ensembl protein_coding_gene 397598 399045 . + . ID=Phyra71453;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_20000011;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 397598 399045 . + . ID=Phyra71453;Parent=Phyra71453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 397598 397741 . + 0 ID=Phyra71453;Parent=Phyra71453;rank=1 scaffold_20 . exon 397598 397741 . + . ID=Phyra71453.1;Parent=Phyra71453;constitutive=1;rank=1 scaffold_20 . CDS 397837 397962 . + 0 ID=Phyra71453;Parent=Phyra71453;rank=2 scaffold_20 . exon 397837 397962 . + . ID=Phyra71453.2;Parent=Phyra71453;constitutive=1;rank=2 scaffold_20 . CDS 398026 398586 . + 0 ID=Phyra71453;Parent=Phyra71453;rank=3 scaffold_20 . exon 398026 398586 . + . ID=Phyra71453.3;Parent=Phyra71453;constitutive=1;rank=3 scaffold_20 . CDS 398668 398808 . + 0 ID=Phyra71453;Parent=Phyra71453;rank=4 scaffold_20 . exon 398668 398808 . + . ID=Phyra71453.4;Parent=Phyra71453;constitutive=1;rank=4 scaffold_20 . CDS 398893 398956 . + 0 ID=Phyra71453;Parent=Phyra71453;rank=5 scaffold_20 . exon 398893 398956 . + . ID=Phyra71453.5;Parent=Phyra71453;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_20 . CDS 399026 399045 . + 0 ID=Phyra71453;Parent=Phyra71453;rank=6 scaffold_20 . exon 399026 399045 . + . ID=Phyra71453.6;Parent=Phyra71453;constitutive=1;ensembl_phase=1;rank=6 scaffold_20 ensembl protein_coding_gene 400171 401646 . - . ID=Phyra76816;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000105;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 400171 401646 . - . ID=Phyra76816;Parent=Phyra76816;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 400171 401646 . - 0 ID=Phyra76816;Parent=Phyra76816;rank=1 scaffold_20 . exon 400171 401646 . - . ID=Phyra76816.1;Parent=Phyra76816;constitutive=1;rank=1 scaffold_20 . repeat_region 407837 407886 . ? . description=dust scaffold_20 . biological_region 408117 408121 0.999 + . logic_name=eponine scaffold_20 . repeat_region 408937 408986 . ? . description=dust scaffold_20 . biological_region 409504 409509 0.999 + . logic_name=eponine scaffold_20 . biological_region 409508 409513 0.999 - . logic_name=eponine scaffold_20 . biological_region 409529 409531 0.999 + . logic_name=eponine scaffold_20 . repeat_region 410855 410904 . ? . description=dust scaffold_20 . repeat_region 411994 412043 . ? . description=dust scaffold_20 . repeat_region 412500 412647 . ? . description=trf scaffold_20 . biological_region 413623 413631 0.999 + . logic_name=eponine scaffold_20 . repeat_region 416172 416221 . ? . description=dust scaffold_20 ensembl protein_coding_gene 412631 416105 . - . ID=Phyra76817;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000106;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 412631 416105 . - . ID=Phyra76817;Parent=Phyra76817;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 412631 413263 . - 0 ID=Phyra76817;Parent=Phyra76817;rank=2 scaffold_20 . exon 412631 413263 . - . ID=Phyra76817.2;Parent=Phyra76817;constitutive=1;rank=2 scaffold_20 . CDS 413391 416105 . - 0 ID=Phyra76817;Parent=Phyra76817;rank=1 scaffold_20 . exon 413391 416105 . - . ID=Phyra76817.1;Parent=Phyra76817;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 417271 418869 . + . ID=Phyra76818;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000107;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 417271 418869 . + . ID=Phyra76818;Parent=Phyra76818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 417271 417299 . + 0 ID=Phyra76818;Parent=Phyra76818;rank=1 scaffold_20 . exon 417271 417299 . + . ID=Phyra76818.1;Parent=Phyra76818;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 417420 417991 . + 0 ID=Phyra76818;Parent=Phyra76818;rank=2 scaffold_20 . CDS 418294 418482 . + 0 ID=Phyra76818;Parent=Phyra76818;rank=3 scaffold_20 . CDS 418703 418869 . + 0 ID=Phyra76818;Parent=Phyra76818;rank=4 scaffold_20 . exon 417420 417991 . + . ID=Phyra76818.2;Parent=Phyra76818;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_20 . exon 418294 418482 . + . ID=Phyra76818.3;Parent=Phyra76818;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_20 . exon 418703 418869 . + . ID=Phyra76818.4;Parent=Phyra76818;constitutive=1;ensembl_phase=1;rank=4 scaffold_20 . repeat_region 431660 431715 . ? . description=dust scaffold_20 . repeat_region 432138 432314 . ? . description=dust scaffold_20 . repeat_region 433266 433320 . ? . description=trf scaffold_20 . repeat_region 433269 433320 . ? . description=trf scaffold_20 . repeat_region 436048 436087 . ? . description=dust scaffold_20 . biological_region 442970 442973 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 446409 448133 . + . ID=Phyra76819;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000108;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 446409 448133 . + . ID=Phyra76819;Parent=Phyra76819;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 446409 448133 . + 0 ID=Phyra76819;Parent=Phyra76819;rank=1 scaffold_20 . exon 446409 448133 . + . ID=Phyra76819.1;Parent=Phyra76819;constitutive=1;rank=1 scaffold_20 . repeat_region 448261 448268 . ? . description=dust scaffold_20 ensembl protein_coding_gene 449116 450717 . + . ID=Phyra76820;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000109;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 449116 450717 . + . ID=Phyra76820;Parent=Phyra76820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 449116 449669 . + 0 ID=Phyra76820;Parent=Phyra76820;rank=1 scaffold_20 . exon 449116 449669 . + . ID=Phyra76820.1;Parent=Phyra76820;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 449952 450465 . + 0 ID=Phyra76820;Parent=Phyra76820;rank=2 scaffold_20 . exon 449952 450465 . + . ID=Phyra76820.2;Parent=Phyra76820;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 450547 450717 . + 0 ID=Phyra76820;Parent=Phyra76820;rank=3 scaffold_20 . exon 450547 450717 . + . ID=Phyra76820.3;Parent=Phyra76820;constitutive=1;rank=3 scaffold_20 ensembl protein_coding_gene 451901 453422 . + . ID=Phyra76821;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000110;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 451901 453422 . + . ID=Phyra76821;Parent=Phyra76821;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 451901 452936 . + 0 ID=Phyra76821;Parent=Phyra76821;rank=1 scaffold_20 . exon 451901 452936 . + . ID=Phyra76821.1;Parent=Phyra76821;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 453024 453163 . + 0 ID=Phyra76821;Parent=Phyra76821;rank=2 scaffold_20 . exon 453024 453163 . + . ID=Phyra76821.2;Parent=Phyra76821;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 453252 453422 . + 0 ID=Phyra76821;Parent=Phyra76821;rank=3 scaffold_20 . exon 453252 453422 . + . ID=Phyra76821.3;Parent=Phyra76821;constitutive=1;rank=3 scaffold_20 ensembl protein_coding_gene 454213 455825 . + . ID=Phyra76822;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000111;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 454213 455825 . + . ID=Phyra76822;Parent=Phyra76822;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 454213 454346 . + 0 ID=Phyra76822;Parent=Phyra76822;rank=1 scaffold_20 . exon 454213 454346 . + . ID=Phyra76822.1;Parent=Phyra76822;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 454461 455592 . + 0 ID=Phyra76822;Parent=Phyra76822;rank=2 scaffold_20 . exon 454461 455592 . + . ID=Phyra76822.2;Parent=Phyra76822;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 455655 455825 . + 0 ID=Phyra76822;Parent=Phyra76822;rank=3 scaffold_20 . exon 455655 455825 . + . ID=Phyra76822.3;Parent=Phyra76822;constitutive=1;rank=3 scaffold_20 . repeat_region 464985 465026 . ? . description=trf scaffold_20 . biological_region 465546 465548 0.999 - . logic_name=eponine scaffold_20 . biological_region 465724 465726 0.999 + . logic_name=eponine scaffold_20 . biological_region 466100 466104 0.999 + . logic_name=eponine scaffold_20 . biological_region 466147 466149 0.999 + . logic_name=eponine scaffold_20 . biological_region 466172 466175 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 460387 461448 . - . ID=Phyra76823;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000112;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 460387 461448 . - . ID=Phyra76823;Parent=Phyra76823;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 460387 460516 . - 0 ID=Phyra76823;Parent=Phyra76823;rank=7 scaffold_20 . exon 460387 460516 . - . ID=Phyra76823.7;Parent=Phyra76823;constitutive=1;ensembl_phase=2;rank=7 scaffold_20 . CDS 460590 460668 . - 0 ID=Phyra76823;Parent=Phyra76823;rank=6 scaffold_20 . exon 460590 460668 . - . ID=Phyra76823.6;Parent=Phyra76823;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_20 . CDS 460745 460882 . - 0 ID=Phyra76823;Parent=Phyra76823;rank=5 scaffold_20 . exon 460745 460882 . - . ID=Phyra76823.5;Parent=Phyra76823;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_20 . CDS 460951 461031 . - 0 ID=Phyra76823;Parent=Phyra76823;rank=4 scaffold_20 . exon 460951 461031 . - . ID=Phyra76823.4;Parent=Phyra76823;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_20 . CDS 461101 461175 . - 0 ID=Phyra76823;Parent=Phyra76823;rank=3 scaffold_20 . exon 461101 461175 . - . ID=Phyra76823.3;Parent=Phyra76823;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 461248 461332 . - 0 ID=Phyra76823;Parent=Phyra76823;rank=2 scaffold_20 . exon 461248 461332 . - . ID=Phyra76823.2;Parent=Phyra76823;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_20 . CDS 461422 461448 . - 0 ID=Phyra76823;Parent=Phyra76823;rank=1 scaffold_20 . exon 461422 461448 . - . ID=Phyra76823.1;Parent=Phyra76823;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 463011 464101 . + . ID=Phyra76824;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000113;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 463011 464101 . + . ID=Phyra76824;Parent=Phyra76824;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 463011 463013 . + 0 ID=Phyra76824;Parent=Phyra76824;rank=1 scaffold_20 . exon 463011 463013 . + . ID=Phyra76824.1;Parent=Phyra76824;constitutive=1;rank=1 scaffold_20 . CDS 463089 463238 . + 0 ID=Phyra76824;Parent=Phyra76824;rank=2 scaffold_20 . exon 463089 463238 . + . ID=Phyra76824.2;Parent=Phyra76824;constitutive=1;rank=2 scaffold_20 . CDS 463331 464101 . + 0 ID=Phyra76824;Parent=Phyra76824;rank=3 scaffold_20 . exon 463331 464101 . + . ID=Phyra76824.3;Parent=Phyra76824;constitutive=1;rank=3 scaffold_20 ensembl protein_coding_gene 464312 465832 . - . ID=Phyra76825;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000114;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 464312 465832 . - . ID=Phyra76825;Parent=Phyra76825;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 464312 465832 . - 0 ID=Phyra76825;Parent=Phyra76825;rank=1 scaffold_20 . exon 464312 465832 . - . ID=Phyra76825.1;Parent=Phyra76825;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 466077 466669 . + . ID=Phyra76826;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000115;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 466077 466669 . + . ID=Phyra76826;Parent=Phyra76826;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 466077 466622 . + 0 ID=Phyra76826;Parent=Phyra76826;rank=1 scaffold_20 . exon 466077 466622 . + . ID=Phyra76826.1;Parent=Phyra76826;constitutive=1;rank=1 scaffold_20 . CDS 466649 466669 . + 0 ID=Phyra76826;Parent=Phyra76826;rank=2 scaffold_20 . exon 466649 466669 . + . ID=Phyra76826.2;Parent=Phyra76826;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 470464 473319 . + . ID=Phyra71454;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_20000012;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 470464 473319 . + . ID=Phyra71454;Parent=Phyra71454;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 470464 470596 . + 0 ID=Phyra71454;Parent=Phyra71454;rank=1 scaffold_20 . exon 470464 470596 . + . ID=Phyra71454.1;Parent=Phyra71454;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 470639 471078 . + 0 ID=Phyra71454;Parent=Phyra71454;rank=2 scaffold_20 . exon 470639 471078 . + . ID=Phyra71454.2;Parent=Phyra71454;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 471166 473319 . + 0 ID=Phyra71454;Parent=Phyra71454;rank=3 scaffold_20 . exon 471166 473319 . + . ID=Phyra71454.3;Parent=Phyra71454;constitutive=1;rank=3 scaffold_20 ensembl protein_coding_gene 473485 475098 . + . ID=Phyra76828;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000117;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 473485 475098 . + . ID=Phyra76828;Parent=Phyra76828;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 473485 475098 . + 0 ID=Phyra76828;Parent=Phyra76828;rank=1 scaffold_20 . exon 473485 475098 . + . ID=Phyra76828.1;Parent=Phyra76828;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 475268 476830 . - . ID=Phyra76829;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000118;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 475268 476830 . - . ID=Phyra76829;Parent=Phyra76829;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 475268 476830 . - 0 ID=Phyra76829;Parent=Phyra76829;rank=1 scaffold_20 . exon 475268 476830 . - . ID=Phyra76829.1;Parent=Phyra76829;constitutive=1;rank=1 scaffold_20 . biological_region 477235 477238 0.999 + . logic_name=eponine scaffold_20 . biological_region 477485 477491 0.999 + . logic_name=eponine scaffold_20 . biological_region 480050 480051 0.999 + . logic_name=eponine scaffold_20 . biological_region 480153 480157 0.999 + . logic_name=eponine scaffold_20 . biological_region 480169 480172 0.999 - . logic_name=eponine scaffold_20 . biological_region 480646 480646 0.999 - . logic_name=eponine scaffold_20 . biological_region 481191 481194 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 477165 481175 . - . ID=Phyra76830;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000119;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 477165 481175 . - . ID=Phyra76830;Parent=Phyra76830;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 477165 481175 . - 0 ID=Phyra76830;Parent=Phyra76830;rank=1 scaffold_20 . exon 477165 481175 . - . ID=Phyra76830.1;Parent=Phyra76830;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 482094 483347 . + . ID=Phyra76831;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000120;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 482094 483347 . + . ID=Phyra76831;Parent=Phyra76831;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 482094 483347 . + 0 ID=Phyra76831;Parent=Phyra76831;rank=1 scaffold_20 . exon 482094 483347 . + . ID=Phyra76831.1;Parent=Phyra76831;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 484076 486527 . + . ID=Phyra94633;biotype=protein_coding;external_name=C_scaffold_20000042;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 484076 486527 . + . ID=Phyra94633;Parent=Phyra94633;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 484076 484498 . + 0 ID=Phyra94633;Parent=Phyra94633;rank=1 scaffold_20 . exon 484076 484498 . + . ID=Phyra94633.1;Parent=Phyra94633;constitutive=1;rank=1 scaffold_20 . CDS 484610 485350 . + 0 ID=Phyra94633;Parent=Phyra94633;rank=2 scaffold_20 . exon 484610 485350 . + . ID=Phyra94633.2;Parent=Phyra94633;constitutive=1;rank=2 scaffold_20 . CDS 485535 485800 . + 0 ID=Phyra94633;Parent=Phyra94633;rank=3 scaffold_20 . exon 485535 485800 . + . ID=Phyra94633.3;Parent=Phyra94633;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_20 . CDS 485999 486527 . + 0 ID=Phyra94633;Parent=Phyra94633;rank=4 scaffold_20 . exon 485999 486527 . + . ID=Phyra94633.4;Parent=Phyra94633;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 . repeat_region 495307 495348 . ? . description=trf scaffold_20 . repeat_region 495888 495973 . ? . description=dust scaffold_20 ensembl protein_coding_gene 489665 491690 . - . ID=Phyra76833;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000122;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 489665 491690 . - . ID=Phyra76833;Parent=Phyra76833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 489665 489691 . - 0 ID=Phyra76833;Parent=Phyra76833;rank=4 scaffold_20 . exon 489665 489691 . - . ID=Phyra76833.4;Parent=Phyra76833;constitutive=1;rank=4 scaffold_20 . CDS 489778 490741 . - 0 ID=Phyra76833;Parent=Phyra76833;rank=3 scaffold_20 . exon 489778 490741 . - . ID=Phyra76833.3;Parent=Phyra76833;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 . CDS 490828 491417 . - 0 ID=Phyra76833;Parent=Phyra76833;rank=2 scaffold_20 . exon 490828 491417 . - . ID=Phyra76833.2;Parent=Phyra76833;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_20 . CDS 491499 491690 . - 0 ID=Phyra76833;Parent=Phyra76833;rank=1 scaffold_20 . exon 491499 491690 . - . ID=Phyra76833.1;Parent=Phyra76833;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 496584 497654 . + . ID=Phyra76834;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000123;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 496584 497654 . + . ID=Phyra76834;Parent=Phyra76834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 496584 497654 . + 0 ID=Phyra76834;Parent=Phyra76834;rank=1 scaffold_20 . exon 496584 497654 . + . ID=Phyra76834.1;Parent=Phyra76834;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 502791 503300 . + . ID=Phyra44162;biotype=protein_coding;external_name=gwEuk.20.113.1;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 502791 503300 . + . ID=Phyra44162;Parent=Phyra44162;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 502791 503300 . + 0 ID=Phyra44162;Parent=Phyra44162;rank=1 scaffold_20 . exon 502791 503300 . + . ID=Phyra44162.1;Parent=Phyra44162;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 500524 501663 . - . ID=Phyra71455;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_20000013;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 500524 501663 . - . ID=Phyra71455;Parent=Phyra71455;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 500524 500761 . - 0 ID=Phyra71455;Parent=Phyra71455;rank=5 scaffold_20 . exon 500524 500761 . - . ID=Phyra71455.5;Parent=Phyra71455;constitutive=1;ensembl_phase=2;rank=5 scaffold_20 . CDS 500829 500946 . - 0 ID=Phyra71455;Parent=Phyra71455;rank=4 scaffold_20 . exon 500829 500946 . - . ID=Phyra71455.4;Parent=Phyra71455;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_20 . CDS 501018 501060 . - 0 ID=Phyra71455;Parent=Phyra71455;rank=3 scaffold_20 . exon 501018 501060 . - . ID=Phyra71455.3;Parent=Phyra71455;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_20 . CDS 501137 501461 . - 0 ID=Phyra71455;Parent=Phyra71455;rank=2 scaffold_20 . exon 501137 501461 . - . ID=Phyra71455.2;Parent=Phyra71455;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 501554 501663 . - 0 ID=Phyra71455;Parent=Phyra71455;rank=1 scaffold_20 . exon 501554 501663 . - . ID=Phyra71455.1;Parent=Phyra71455;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 506294 508668 . - . ID=Phyra94635;biotype=protein_coding;external_name=C_scaffold_20000044;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 506294 508668 . - . ID=Phyra94635;Parent=Phyra94635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 506294 506632 . - 0 ID=Phyra94635;Parent=Phyra94635;rank=8 scaffold_20 . exon 506294 506632 . - . ID=Phyra94635.8;Parent=Phyra94635;constitutive=1;rank=8 scaffold_20 . CDS 506713 506886 . - 0 ID=Phyra94635;Parent=Phyra94635;rank=7 scaffold_20 . exon 506713 506886 . - . ID=Phyra94635.7;Parent=Phyra94635;constitutive=1;rank=7 scaffold_20 . CDS 506957 507057 . - 0 ID=Phyra94635;Parent=Phyra94635;rank=6 scaffold_20 . CDS 507147 507211 . - 0 ID=Phyra94635;Parent=Phyra94635;rank=5 scaffold_20 . CDS 507297 507474 . - 0 ID=Phyra94635;Parent=Phyra94635;rank=4 scaffold_20 . CDS 507556 508243 . - 0 ID=Phyra94635;Parent=Phyra94635;rank=3 scaffold_20 . CDS 508347 508407 . - 0 ID=Phyra94635;Parent=Phyra94635;rank=2 scaffold_20 . CDS 508484 508668 . - 0 ID=Phyra94635;Parent=Phyra94635;rank=1 scaffold_20 . biological_region 508575 508579 0.999 + . logic_name=eponine scaffold_20 . repeat_region 514373 514384 . ? . description=dust scaffold_20 ensembl protein_coding_gene 511086 512670 . + . ID=Phyra71457;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_20000015;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 511086 512670 . + . ID=Phyra71457;Parent=Phyra71457;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 511086 512472 . + 0 ID=Phyra71457;Parent=Phyra71457;rank=1 scaffold_20 . exon 511086 512472 . + . ID=Phyra71457.1;Parent=Phyra71457;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 512543 512670 . + 0 ID=Phyra71457;Parent=Phyra71457;rank=2 scaffold_20 . exon 512543 512670 . + . ID=Phyra71457.2;Parent=Phyra71457;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 ensembl protein_coding_gene 508935 509719 . + . ID=Phyra76838;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000127;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 508935 509719 . + . ID=Phyra76838;Parent=Phyra76838;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 508935 508949 . + 0 ID=Phyra76838;Parent=Phyra76838;rank=1 scaffold_20 . exon 508935 508949 . + . ID=Phyra76838.1;Parent=Phyra76838;constitutive=1;rank=1 scaffold_20 . CDS 509014 509191 . + 0 ID=Phyra76838;Parent=Phyra76838;rank=2 scaffold_20 . exon 509014 509191 . + . ID=Phyra76838.2;Parent=Phyra76838;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_20 . CDS 509259 509719 . + 0 ID=Phyra76838;Parent=Phyra76838;rank=3 scaffold_20 . exon 509259 509719 . + . ID=Phyra76838.3;Parent=Phyra76838;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 ensembl protein_coding_gene 514017 514952 . - . ID=Phyra76840;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000129;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 514017 514952 . - . ID=Phyra76840;Parent=Phyra76840;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 514017 514332 . - 0 ID=Phyra76840;Parent=Phyra76840;rank=5 scaffold_20 . exon 514017 514332 . - . ID=Phyra76840.5;Parent=Phyra76840;constitutive=1;ensembl_phase=2;rank=5 scaffold_20 . CDS 514409 514565 . - 0 ID=Phyra76840;Parent=Phyra76840;rank=4 scaffold_20 . exon 514409 514565 . - . ID=Phyra76840.4;Parent=Phyra76840;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_20 . CDS 514630 514763 . - 0 ID=Phyra76840;Parent=Phyra76840;rank=3 scaffold_20 . exon 514630 514763 . - . ID=Phyra76840.3;Parent=Phyra76840;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_20 . CDS 514808 514826 . - 0 ID=Phyra76840;Parent=Phyra76840;rank=2 scaffold_20 . exon 514808 514826 . - . ID=Phyra76840.2;Parent=Phyra76840;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_20 . CDS 514889 514952 . - 0 ID=Phyra76840;Parent=Phyra76840;rank=1 scaffold_20 . exon 514889 514952 . - . ID=Phyra76840.1;Parent=Phyra76840;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 515219 517265 . + . ID=Phyra76841;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000130;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 515219 517265 . + . ID=Phyra76841;Parent=Phyra76841;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 515219 515395 . + 0 ID=Phyra76841;Parent=Phyra76841;rank=1 scaffold_20 . exon 515219 515395 . + . ID=Phyra76841.1;Parent=Phyra76841;constitutive=1;rank=1 scaffold_20 . CDS 515469 515536 . + 0 ID=Phyra76841;Parent=Phyra76841;rank=2 scaffold_20 . exon 515469 515536 . + . ID=Phyra76841.2;Parent=Phyra76841;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_20 . CDS 515624 515724 . + 0 ID=Phyra76841;Parent=Phyra76841;rank=3 scaffold_20 . exon 515624 515724 . + . ID=Phyra76841.3;Parent=Phyra76841;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_20 . CDS 515798 515831 . + 0 ID=Phyra76841;Parent=Phyra76841;rank=4 scaffold_20 . exon 515798 515831 . + . ID=Phyra76841.4;Parent=Phyra76841;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_20 . CDS 515893 516523 . + 0 ID=Phyra76841;Parent=Phyra76841;rank=5 scaffold_20 . exon 515893 516523 . + . ID=Phyra76841.5;Parent=Phyra76841;constitutive=1;ensembl_phase=2;rank=5 scaffold_20 . CDS 516591 516667 . + 0 ID=Phyra76841;Parent=Phyra76841;rank=6 scaffold_20 . exon 516591 516667 . + . ID=Phyra76841.6;Parent=Phyra76841;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_20 . CDS 516743 517265 . + 0 ID=Phyra76841;Parent=Phyra76841;rank=7 scaffold_20 . exon 506957 507057 . - . ID=Phyra94635.6;Parent=Phyra94635;constitutive=1;ensembl_phase=1;rank=6 scaffold_20 . exon 507147 507211 . - . ID=Phyra94635.5;Parent=Phyra94635;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_20 . exon 507297 507474 . - . ID=Phyra94635.4;Parent=Phyra94635;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_20 . exon 507556 508243 . - . ID=Phyra94635.3;Parent=Phyra94635;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_20 . exon 508347 508407 . - . ID=Phyra94635.2;Parent=Phyra94635;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . exon 508484 508668 . - . ID=Phyra94635.1;Parent=Phyra94635;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . exon 516743 517265 . + . ID=Phyra76841.7;Parent=Phyra76841;constitutive=1;ensembl_phase=2;rank=7 scaffold_20 ensembl protein_coding_gene 517351 519243 . + . ID=Phyra76842;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000131;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 517351 519243 . + . ID=Phyra76842;Parent=Phyra76842;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 517351 519243 . + 0 ID=Phyra76842;Parent=Phyra76842;rank=1 scaffold_20 . exon 517351 519243 . + . ID=Phyra76842.1;Parent=Phyra76842;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 519810 520703 . + . ID=Phyra76843;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000132;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 519810 520703 . + . ID=Phyra76843;Parent=Phyra76843;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 519810 520703 . + 0 ID=Phyra76843;Parent=Phyra76843;rank=1 scaffold_20 . exon 519810 520703 . + . ID=Phyra76843.1;Parent=Phyra76843;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 520793 522511 . - . ID=Phyra76844;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000133;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 520793 522511 . - . ID=Phyra76844;Parent=Phyra76844;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 520793 520843 . - 0 ID=Phyra76844;Parent=Phyra76844;rank=7 scaffold_20 . exon 520793 520843 . - . ID=Phyra76844.7;Parent=Phyra76844;constitutive=1;rank=7 scaffold_20 . CDS 520914 521027 . - 0 ID=Phyra76844;Parent=Phyra76844;rank=6 scaffold_20 . exon 520914 521027 . - . ID=Phyra76844.6;Parent=Phyra76844;constitutive=1;rank=6 scaffold_20 . CDS 521097 521363 . - 0 ID=Phyra76844;Parent=Phyra76844;rank=5 scaffold_20 . exon 521097 521363 . - . ID=Phyra76844.5;Parent=Phyra76844;constitutive=1;rank=5 scaffold_20 . CDS 521437 521688 . - 0 ID=Phyra76844;Parent=Phyra76844;rank=4 scaffold_20 . exon 521437 521688 . - . ID=Phyra76844.4;Parent=Phyra76844;constitutive=1;rank=4 scaffold_20 . CDS 521765 522111 . - 0 ID=Phyra76844;Parent=Phyra76844;rank=3 scaffold_20 . exon 521765 522111 . - . ID=Phyra76844.3;Parent=Phyra76844;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 522182 522325 . - 0 ID=Phyra76844;Parent=Phyra76844;rank=2 scaffold_20 . exon 522182 522325 . - . ID=Phyra76844.2;Parent=Phyra76844;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 522442 522511 . - 0 ID=Phyra76844;Parent=Phyra76844;rank=1 scaffold_20 . exon 522442 522511 . - . ID=Phyra76844.1;Parent=Phyra76844;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 522652 523680 . + . ID=Phyra76845;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000134;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 522652 523680 . + . ID=Phyra76845;Parent=Phyra76845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 522652 523680 . + 0 ID=Phyra76845;Parent=Phyra76845;rank=1 scaffold_20 . exon 522652 523680 . + . ID=Phyra76845.1;Parent=Phyra76845;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 523807 524337 . - . ID=Phyra76846;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000135;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 523807 524337 . - . ID=Phyra76846;Parent=Phyra76846;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 523807 524337 . - 0 ID=Phyra76846;Parent=Phyra76846;rank=1 scaffold_20 . exon 523807 524337 . - . ID=Phyra76846.1;Parent=Phyra76846;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 524477 527956 . + . ID=Phyra76847;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000136;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 524477 527956 . + . ID=Phyra76847;Parent=Phyra76847;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 524477 526535 . + 0 ID=Phyra76847;Parent=Phyra76847;rank=1 scaffold_20 . exon 524477 526535 . + . ID=Phyra76847.1;Parent=Phyra76847;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 526722 527956 . + 0 ID=Phyra76847;Parent=Phyra76847;rank=2 scaffold_20 . biological_region 530716 530719 0.999 - . logic_name=eponine scaffold_20 . repeat_region 531413 531425 . ? . description=dust scaffold_20 . biological_region 532698 532699 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 528173 530416 . - . ID=Phyra44173;biotype=protein_coding;external_name=gwEuk.20.124.1;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 528173 530416 . - . ID=Phyra44173;Parent=Phyra44173;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 528173 529092 . - 0 ID=Phyra44173;Parent=Phyra44173;rank=5 scaffold_20 . exon 528173 529092 . - . ID=Phyra44173.5;Parent=Phyra44173;constitutive=1;ensembl_phase=1;rank=5 scaffold_20 . CDS 529153 529539 . - 0 ID=Phyra44173;Parent=Phyra44173;rank=4 scaffold_20 . exon 529153 529539 . - . ID=Phyra44173.4;Parent=Phyra44173;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_20 . CDS 529844 530174 . - 0 ID=Phyra44173;Parent=Phyra44173;rank=3 scaffold_20 . exon 529844 530174 . - . ID=Phyra44173.3;Parent=Phyra44173;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_20 . CDS 530232 530292 . - 0 ID=Phyra44173;Parent=Phyra44173;rank=2 scaffold_20 . exon 530232 530292 . - . ID=Phyra44173.2;Parent=Phyra44173;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 530355 530416 . - 0 ID=Phyra44173;Parent=Phyra44173;rank=1 scaffold_20 . exon 530355 530416 . - . ID=Phyra44173.1;Parent=Phyra44173;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . exon 526722 527956 . + . ID=Phyra76847.2;Parent=Phyra76847;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 ensembl protein_coding_gene 531165 533690 . + . ID=Phyra76850;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000139;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 531165 533690 . + . ID=Phyra76850;Parent=Phyra76850;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 531165 531191 . + 0 ID=Phyra76850;Parent=Phyra76850;rank=1 scaffold_20 . exon 531165 531191 . + . ID=Phyra76850.1;Parent=Phyra76850;constitutive=1;rank=1 scaffold_20 . CDS 531228 531392 . + 0 ID=Phyra76850;Parent=Phyra76850;rank=2 scaffold_20 . exon 531228 531392 . + . ID=Phyra76850.2;Parent=Phyra76850;constitutive=1;rank=2 scaffold_20 . CDS 531477 532353 . + 0 ID=Phyra76850;Parent=Phyra76850;rank=3 scaffold_20 . exon 531477 532353 . + . ID=Phyra76850.3;Parent=Phyra76850;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_20 . CDS 532545 532814 . + 0 ID=Phyra76850;Parent=Phyra76850;rank=4 scaffold_20 . exon 532545 532814 . + . ID=Phyra76850.4;Parent=Phyra76850;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_20 . CDS 532888 532988 . + 0 ID=Phyra76850;Parent=Phyra76850;rank=5 scaffold_20 . exon 532888 532988 . + . ID=Phyra76850.5;Parent=Phyra76850;constitutive=1;ensembl_phase=1;rank=5 scaffold_20 . CDS 533137 533307 . + 0 ID=Phyra76850;Parent=Phyra76850;rank=6 scaffold_20 . exon 533137 533307 . + . ID=Phyra76850.6;Parent=Phyra76850;constitutive=1;rank=6 scaffold_20 . CDS 533353 533422 . + 0 ID=Phyra76850;Parent=Phyra76850;rank=7 scaffold_20 . exon 533353 533422 . + . ID=Phyra76850.7;Parent=Phyra76850;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_20 . CDS 533499 533547 . + 0 ID=Phyra76850;Parent=Phyra76850;rank=8 scaffold_20 . exon 533499 533547 . + . ID=Phyra76850.8;Parent=Phyra76850;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_20 . CDS 533615 533690 . + 0 ID=Phyra76850;Parent=Phyra76850;rank=9 scaffold_20 . exon 533615 533690 . + . ID=Phyra76850.9;Parent=Phyra76850;constitutive=1;ensembl_phase=2;rank=9 scaffold_20 ensembl protein_coding_gene 536002 537172 . - . ID=Phyra76851;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000140;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 536002 537172 . - . ID=Phyra76851;Parent=Phyra76851;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 536002 536052 . - 0 ID=Phyra76851;Parent=Phyra76851;rank=2 scaffold_20 . exon 536002 536052 . - . ID=Phyra76851.2;Parent=Phyra76851;constitutive=1;rank=2 scaffold_20 . CDS 536243 537172 . - 0 ID=Phyra76851;Parent=Phyra76851;rank=1 scaffold_20 . exon 536243 537172 . - . ID=Phyra76851.1;Parent=Phyra76851;constitutive=1;rank=1 scaffold_20 . repeat_region 539356 539473 . ? . description=trf scaffold_20 . repeat_region 539360 539446 . ? . description=trf scaffold_20 . repeat_region 539441 539495 . ? . description=trf scaffold_20 . repeat_region 541427 541451 . ? . description=trf scaffold_20 ensembl protein_coding_gene 539150 541605 . - . ID=Phyra76852;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000141;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 539150 541605 . - . ID=Phyra76852;Parent=Phyra76852;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 539150 541413 . - 0 ID=Phyra76852;Parent=Phyra76852;rank=2 scaffold_20 . exon 539150 541413 . - . ID=Phyra76852.2;Parent=Phyra76852;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 541503 541605 . - 0 ID=Phyra76852;Parent=Phyra76852;rank=1 scaffold_20 . exon 541503 541605 . - . ID=Phyra76852.1;Parent=Phyra76852;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 542806 545670 . + . ID=Phyra76853;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000142;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 542806 545670 . + . ID=Phyra76853;Parent=Phyra76853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 542806 544178 . + 0 ID=Phyra76853;Parent=Phyra76853;rank=1 scaffold_20 . exon 542806 544178 . + . ID=Phyra76853.1;Parent=Phyra76853;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 544239 545670 . + 0 ID=Phyra76853;Parent=Phyra76853;rank=2 scaffold_20 . exon 544239 545670 . + . ID=Phyra76853.2;Parent=Phyra76853;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 ensembl protein_coding_gene 546101 546949 . + . ID=Phyra76854;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000143;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 546101 546949 . + . ID=Phyra76854;Parent=Phyra76854;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 546101 546949 . + 0 ID=Phyra76854;Parent=Phyra76854;rank=1 scaffold_20 . exon 546101 546949 . + . ID=Phyra76854.1;Parent=Phyra76854;constitutive=1;rank=1 scaffold_20 . biological_region 546969 546972 0.999 - . logic_name=eponine scaffold_20 . repeat_region 548068 548093 . ? . description=dust scaffold_20 . biological_region 550886 550891 0.999 + . logic_name=eponine scaffold_20 . biological_region 551766 551768 0.999 - . logic_name=eponine scaffold_20 . biological_region 551835 551838 0.999 - . logic_name=eponine scaffold_20 . biological_region 552064 552066 0.999 + . logic_name=eponine scaffold_20 . biological_region 552628 552628 0.999 - . logic_name=eponine scaffold_20 . biological_region 556219 556219 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 556196 557737 . - . ID=Phyra76857;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000146;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 556196 557737 . - . ID=Phyra76857;Parent=Phyra76857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 556196 557737 . - 0 ID=Phyra76857;Parent=Phyra76857;rank=1 scaffold_20 . exon 556196 557737 . - . ID=Phyra76857.1;Parent=Phyra76857;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 547263 552200 . + . ID=Phyra94639;biotype=protein_coding;external_name=C_scaffold_20000048;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 547263 552200 . + . ID=Phyra94639;Parent=Phyra94639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 547263 547316 . + 0 ID=Phyra94639;Parent=Phyra94639;rank=1 scaffold_20 . exon 547263 547316 . + . ID=Phyra94639.1;Parent=Phyra94639;constitutive=1;rank=1 scaffold_20 . CDS 547443 547620 . + 0 ID=Phyra94639;Parent=Phyra94639;rank=2 scaffold_20 . exon 547443 547620 . + . ID=Phyra94639.2;Parent=Phyra94639;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_20 . CDS 547789 548066 . + 0 ID=Phyra94639;Parent=Phyra94639;rank=3 scaffold_20 . exon 547789 548066 . + . ID=Phyra94639.3;Parent=Phyra94639;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 548112 549235 . + 0 ID=Phyra94639;Parent=Phyra94639;rank=4 scaffold_20 . exon 548112 549235 . + . ID=Phyra94639.4;Parent=Phyra94639;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_20 . CDS 549299 549521 . + 0 ID=Phyra94639;Parent=Phyra94639;rank=5 scaffold_20 . exon 549299 549521 . + . ID=Phyra94639.5;Parent=Phyra94639;constitutive=1;ensembl_phase=2;rank=5 scaffold_20 . CDS 549596 549971 . + 0 ID=Phyra94639;Parent=Phyra94639;rank=6 scaffold_20 . exon 549596 549971 . + . ID=Phyra94639.6;Parent=Phyra94639;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_20 . CDS 549993 550260 . + 0 ID=Phyra94639;Parent=Phyra94639;rank=7 scaffold_20 . exon 549993 550260 . + . ID=Phyra94639.7;Parent=Phyra94639;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_20 . CDS 550334 550353 . + 0 ID=Phyra94639;Parent=Phyra94639;rank=8 scaffold_20 . exon 550334 550353 . + . ID=Phyra94639.8;Parent=Phyra94639;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_20 . CDS 551141 551267 . + 0 ID=Phyra94639;Parent=Phyra94639;rank=9 scaffold_20 . exon 551141 551267 . + . ID=Phyra94639.9;Parent=Phyra94639;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_20 . CDS 551681 551901 . + 0 ID=Phyra94639;Parent=Phyra94639;rank=10 scaffold_20 . exon 551681 551901 . + . ID=Phyra94639.10;Parent=Phyra94639;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_20 . CDS 551932 552200 . + 0 ID=Phyra94639;Parent=Phyra94639;rank=11 scaffold_20 . exon 551932 552200 . + . ID=Phyra94639.11;Parent=Phyra94639;constitutive=1;ensembl_phase=1;rank=11 scaffold_20 . repeat_region 557339 557362 . ? . description=trf scaffold_20 ensembl protein_coding_gene 558027 559053 . - . ID=Phyra71459;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_20000017;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 558027 559053 . - . ID=Phyra71459;Parent=Phyra71459;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 558027 558254 . - 0 ID=Phyra71459;Parent=Phyra71459;rank=6 scaffold_20 . exon 558027 558254 . - . ID=Phyra71459.6;Parent=Phyra71459;constitutive=1;rank=6 scaffold_20 . CDS 558337 558434 . - 0 ID=Phyra71459;Parent=Phyra71459;rank=5 scaffold_20 . exon 558337 558434 . - . ID=Phyra71459.5;Parent=Phyra71459;constitutive=1;ensembl_phase=1;rank=5 scaffold_20 . CDS 558549 558614 . - 0 ID=Phyra71459;Parent=Phyra71459;rank=4 scaffold_20 . exon 558549 558614 . - . ID=Phyra71459.4;Parent=Phyra71459;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_20 . CDS 558687 558787 . - 0 ID=Phyra71459;Parent=Phyra71459;rank=3 scaffold_20 . exon 558687 558787 . - . ID=Phyra71459.3;Parent=Phyra71459;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_20 . CDS 558849 558921 . - 0 ID=Phyra71459;Parent=Phyra71459;rank=2 scaffold_20 . exon 558849 558921 . - . ID=Phyra71459.2;Parent=Phyra71459;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_20 . CDS 558996 559053 . - 0 ID=Phyra71459;Parent=Phyra71459;rank=1 scaffold_20 . exon 558996 559053 . - . ID=Phyra71459.1;Parent=Phyra71459;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 563109 564028 . + . ID=Phyra76859;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_20000148;logic_name=jgi_phyra1 scaffold_20 ensembl transcript 563109 564028 . + . ID=Phyra76859;Parent=Phyra76859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_20 . CDS 563109 563336 . + 0 ID=Phyra76859;Parent=Phyra76859;rank=1 scaffold_20 . exon 563109 563336 . + . ID=Phyra76859.1;Parent=Phyra76859;constitutive=1;rank=1 scaffold_20 . CDS 563387 564028 . + 0 ID=Phyra76859;Parent=Phyra76859;rank=2 scaffold_20 . exon 563387 564028 . + . ID=Phyra76859.2;Parent=Phyra76859;constitutive=1;rank=2 scaffold_20 . repeat_region 565888 577058 . ? . description=dust scaffold_20 . biological_region 578660 578663 0.999 + . logic_name=eponine scaffold_20 . repeat_region 586128 586160 . ? . description=trf scaffold_20 ensembl tRNA_gene 585923 585995 . + . ID=EPrPRAG00000000106;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_20 ensembl transcript 585923 585995 . + . ID=EPrPRAT00000000106;Parent=EPrPRAG00000000106;biotype=tRNA;logic_name=ncrna_eg scaffold_20 . exon 585923 585995 . + . ID=EPrPRAE00000000106;Parent=EPrPRAT00000000106;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_19 1 590304 scaffold_19 . repeat_region 1 297 . ? . description=trf scaffold_19 . repeat_region 1 297 . ? . description=dust scaffold_19 . repeat_region 782 824 . ? . description=trf scaffold_19 . repeat_region 834 1238 . ? . description=dust scaffold_19 . repeat_region 1519 1768 . ? . description=trf scaffold_19 . biological_region 1961 1964 0.999 - . logic_name=eponine scaffold_19 . repeat_region 2416 3471 . ? . description=dust scaffold_19 . repeat_region 5056 5280 . ? . description=dust scaffold_19 . repeat_region 5329 5351 . ? . description=trf scaffold_19 . repeat_region 5329 5351 . ? . description=dust scaffold_19 . biological_region 5847 5851 0.999 - . logic_name=eponine scaffold_19 . repeat_region 6277 6284 . ? . description=dust scaffold_19 . repeat_region 6788 6837 . ? . description=dust scaffold_19 . biological_region 8048 8048 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 3859 4650 . + . ID=Phyra76569;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000001;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 3859 4650 . + . ID=Phyra76569;Parent=Phyra76569;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 3859 4650 . + 0 ID=Phyra76569;Parent=Phyra76569;rank=1 scaffold_19 . exon 3859 4650 . + . ID=Phyra76569.1;Parent=Phyra76569;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 15757 17939 . - . ID=Phyra76570;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000002;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 15757 17939 . - . ID=Phyra76570;Parent=Phyra76570;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 15757 16403 . - 0 ID=Phyra76570;Parent=Phyra76570;rank=3 scaffold_19 . exon 15757 16403 . - . ID=Phyra76570.3;Parent=Phyra76570;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 16517 17147 . - 0 ID=Phyra76570;Parent=Phyra76570;rank=2 scaffold_19 . exon 16517 17147 . - . ID=Phyra76570.2;Parent=Phyra76570;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 17214 17939 . - 0 ID=Phyra76570;Parent=Phyra76570;rank=1 scaffold_19 . exon 17214 17939 . - . ID=Phyra76570.1;Parent=Phyra76570;constitutive=1;rank=1 scaffold_19 . repeat_region 22446 22589 . ? . description=trf scaffold_19 . repeat_region 28406 28463 . ? . description=trf scaffold_19 . repeat_region 29718 29725 . ? . description=dust scaffold_19 . repeat_region 32835 32847 . ? . description=dust scaffold_19 . repeat_region 37577 37626 . ? . description=dust scaffold_19 . repeat_region 44054 44172 . ? . description=trf scaffold_19 . repeat_region 44080 44188 . ? . description=trf scaffold_19 . repeat_region 46001 46040 . ? . description=trf scaffold_19 . biological_region 46736 46736 0.999 + . logic_name=eponine scaffold_19 . repeat_region 46975 47707 . ? . description=trf scaffold_19 . repeat_region 47872 48491 . ? . description=trf scaffold_19 . repeat_region 48926 49017 . ? . description=trf scaffold_19 ensembl protein_coding_gene 46196 51298 . + . ID=Phyra76571;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000003;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 46196 51298 . + . ID=Phyra76571;Parent=Phyra76571;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 46196 47165 . + 0 ID=Phyra76571;Parent=Phyra76571;rank=1 scaffold_19 . exon 46196 47165 . + . ID=Phyra76571.1;Parent=Phyra76571;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 47382 47477 . + 0 ID=Phyra76571;Parent=Phyra76571;rank=2 scaffold_19 . exon 47382 47477 . + . ID=Phyra76571.2;Parent=Phyra76571;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 47499 47555 . + 0 ID=Phyra76571;Parent=Phyra76571;rank=3 scaffold_19 . exon 47499 47555 . + . ID=Phyra76571.3;Parent=Phyra76571;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 47850 47906 . + 0 ID=Phyra76571;Parent=Phyra76571;rank=4 scaffold_19 . exon 47850 47906 . + . ID=Phyra76571.4;Parent=Phyra76571;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_19 . CDS 48291 48805 . + 0 ID=Phyra76571;Parent=Phyra76571;rank=5 scaffold_19 . exon 48291 48805 . + . ID=Phyra76571.5;Parent=Phyra76571;constitutive=1;ensembl_phase=1;rank=5 scaffold_19 . CDS 48908 48961 . + 0 ID=Phyra76571;Parent=Phyra76571;rank=6 scaffold_19 . exon 48908 48961 . + . ID=Phyra76571.6;Parent=Phyra76571;constitutive=1;rank=6 scaffold_19 . CDS 49106 51298 . + 0 ID=Phyra76571;Parent=Phyra76571;rank=7 scaffold_19 . exon 49106 51298 . + . ID=Phyra76571.7;Parent=Phyra76571;constitutive=1;rank=7 scaffold_19 . repeat_region 57437 57444 . ? . description=dust scaffold_19 . repeat_region 58519 58529 . ? . description=dust scaffold_19 ensembl protein_coding_gene 52072 52607 . + . ID=Phyra43567;biotype=protein_coding;external_name=gwEuk.19.108.1;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 52072 52607 . + . ID=Phyra43567;Parent=Phyra43567;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 52072 52177 . + 0 ID=Phyra43567;Parent=Phyra43567;rank=1 scaffold_19 . exon 52072 52177 . + . ID=Phyra43567.1;Parent=Phyra43567;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 52255 52607 . + 0 ID=Phyra43567;Parent=Phyra43567;rank=2 scaffold_19 . exon 52255 52607 . + . ID=Phyra43567.2;Parent=Phyra43567;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 ensembl protein_coding_gene 58901 61003 . - . ID=Phyra76573;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000005;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 58901 61003 . - . ID=Phyra76573;Parent=Phyra76573;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 58901 60695 . - 0 ID=Phyra76573;Parent=Phyra76573;rank=2 scaffold_19 . exon 58901 60695 . - . ID=Phyra76573.2;Parent=Phyra76573;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 60750 61003 . - 0 ID=Phyra76573;Parent=Phyra76573;rank=1 scaffold_19 ensembl protein_coding_gene 56411 58110 . - . ID=Phyra94550;biotype=protein_coding;external_name=C_scaffold_19000001;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 56411 58110 . - . ID=Phyra94550;Parent=Phyra94550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 56411 56496 . - 0 ID=Phyra94550;Parent=Phyra94550;rank=4 scaffold_19 . exon 56411 56496 . - . ID=Phyra94550.4;Parent=Phyra94550;constitutive=1;ensembl_phase=1;rank=4 scaffold_19 . CDS 56667 56938 . - 0 ID=Phyra94550;Parent=Phyra94550;rank=3 scaffold_19 . exon 56667 56938 . - . ID=Phyra94550.3;Parent=Phyra94550;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_19 . CDS 56969 57602 . - 0 ID=Phyra94550;Parent=Phyra94550;rank=2 scaffold_19 . exon 56969 57602 . - . ID=Phyra94550.2;Parent=Phyra94550;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_19 . CDS 57681 58110 . - 0 ID=Phyra94550;Parent=Phyra94550;rank=1 scaffold_19 . exon 57681 58110 . - . ID=Phyra94550.1;Parent=Phyra94550;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . repeat_region 59265 59307 . ? . description=trf scaffold_19 . repeat_region 59550 59587 . ? . description=trf scaffold_19 . repeat_region 59641 59705 . ? . description=trf scaffold_19 . repeat_region 59687 59722 . ? . description=trf scaffold_19 . repeat_region 59687 59722 . ? . description=trf scaffold_19 . repeat_region 60866 60913 . ? . description=trf scaffold_19 . repeat_region 60935 60961 . ? . description=trf scaffold_19 . biological_region 61138 61142 0.999 + . logic_name=eponine scaffold_19 . biological_region 61199 61201 0.999 + . logic_name=eponine scaffold_19 . biological_region 61220 61227 0.999 - . logic_name=eponine scaffold_19 . biological_region 61662 61663 0.999 - . logic_name=eponine scaffold_19 . biological_region 61740 61746 0.999 - . logic_name=eponine scaffold_19 . biological_region 61756 61760 0.999 - . logic_name=eponine scaffold_19 . biological_region 62526 62530 0.999 + . logic_name=eponine scaffold_19 . biological_region 63712 63712 0.999 + . logic_name=eponine scaffold_19 . biological_region 65829 65833 0.999 + . logic_name=eponine scaffold_19 . biological_region 65858 65863 0.999 - . logic_name=eponine scaffold_19 . biological_region 65911 65918 0.999 + . logic_name=eponine scaffold_19 . exon 60750 61003 . - . ID=Phyra76573.1;Parent=Phyra76573;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 ensembl protein_coding_gene 61556 63946 . + . ID=Phyra76574;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000006;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 61556 63946 . + . ID=Phyra76574;Parent=Phyra76574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 61556 63946 . + 0 ID=Phyra76574;Parent=Phyra76574;rank=1 scaffold_19 . exon 61556 63946 . + . ID=Phyra76574.1;Parent=Phyra76574;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 64057 65558 . - . ID=Phyra76575;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000007;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 64057 65558 . - . ID=Phyra76575;Parent=Phyra76575;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 64057 64293 . - 0 ID=Phyra76575;Parent=Phyra76575;rank=2 scaffold_19 . exon 64057 64293 . - . ID=Phyra76575.2;Parent=Phyra76575;constitutive=1;rank=2 scaffold_19 . CDS 64359 65558 . - 0 ID=Phyra76575;Parent=Phyra76575;rank=1 scaffold_19 . exon 64359 65558 . - . ID=Phyra76575.1;Parent=Phyra76575;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 65726 67739 . + . ID=Phyra76576;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000008;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 65726 67739 . + . ID=Phyra76576;Parent=Phyra76576;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 65726 66004 . + 0 ID=Phyra76576;Parent=Phyra76576;rank=1 scaffold_19 . exon 65726 66004 . + . ID=Phyra76576.1;Parent=Phyra76576;constitutive=1;rank=1 scaffold_19 . CDS 66026 66117 . + 0 ID=Phyra76576;Parent=Phyra76576;rank=2 scaffold_19 . exon 66026 66117 . + . ID=Phyra76576.2;Parent=Phyra76576;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_19 . CDS 66212 66434 . + 0 ID=Phyra76576;Parent=Phyra76576;rank=3 scaffold_19 . exon 66212 66434 . + . ID=Phyra76576.3;Parent=Phyra76576;constitutive=1;ensembl_phase=2;rank=3 scaffold_19 . CDS 66889 67039 . + 0 ID=Phyra76576;Parent=Phyra76576;rank=4 scaffold_19 . exon 66889 67039 . + . ID=Phyra76576.4;Parent=Phyra76576;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_19 . CDS 67231 67739 . + 0 ID=Phyra76576;Parent=Phyra76576;rank=5 scaffold_19 . exon 67231 67739 . + . ID=Phyra76576.5;Parent=Phyra76576;constitutive=1;ensembl_phase=1;rank=5 scaffold_19 ensembl protein_coding_gene 67830 68357 . - . ID=Phyra76577;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000009;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 67830 68357 . - . ID=Phyra76577;Parent=Phyra76577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 67830 68357 . - 0 ID=Phyra76577;Parent=Phyra76577;rank=1 scaffold_19 . exon 67830 68357 . - . ID=Phyra76577.1;Parent=Phyra76577;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 68717 69764 . - . ID=Phyra76578;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000010;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 68717 69764 . - . ID=Phyra76578;Parent=Phyra76578;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 68717 69441 . - 0 ID=Phyra76578;Parent=Phyra76578;rank=2 scaffold_19 . exon 68717 69441 . - . ID=Phyra76578.2;Parent=Phyra76578;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 69545 69764 . - 0 ID=Phyra76578;Parent=Phyra76578;rank=1 scaffold_19 . repeat_region 73407 73416 . ? . description=dust scaffold_19 . repeat_region 74182 74194 . ? . description=dust scaffold_19 ensembl protein_coding_gene 75774 77117 . + . ID=Phyra71432;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_19000001;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 75774 77117 . + . ID=Phyra71432;Parent=Phyra71432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 75774 76978 . + 0 ID=Phyra71432;Parent=Phyra71432;rank=1 scaffold_19 . exon 75774 76978 . + . ID=Phyra71432.1;Parent=Phyra71432;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 77057 77117 . + 0 ID=Phyra71432;Parent=Phyra71432;rank=2 scaffold_19 . exon 77057 77117 . + . ID=Phyra71432.2;Parent=Phyra71432;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . exon 69545 69764 . - . ID=Phyra76578.1;Parent=Phyra76578;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 ensembl protein_coding_gene 70328 71445 . + . ID=Phyra76579;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000011;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 70328 71445 . + . ID=Phyra76579;Parent=Phyra76579;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 70328 70510 . + 0 ID=Phyra76579;Parent=Phyra76579;rank=1 scaffold_19 . exon 70328 70510 . + . ID=Phyra76579.1;Parent=Phyra76579;constitutive=1;rank=1 scaffold_19 . CDS 70591 70713 . + 0 ID=Phyra76579;Parent=Phyra76579;rank=2 scaffold_19 . exon 70591 70713 . + . ID=Phyra76579.2;Parent=Phyra76579;constitutive=1;rank=2 scaffold_19 . CDS 70823 71002 . + 0 ID=Phyra76579;Parent=Phyra76579;rank=3 scaffold_19 . exon 70823 71002 . + . ID=Phyra76579.3;Parent=Phyra76579;constitutive=1;rank=3 scaffold_19 . CDS 71104 71445 . + 0 ID=Phyra76579;Parent=Phyra76579;rank=4 scaffold_19 . exon 71104 71445 . + . ID=Phyra76579.4;Parent=Phyra76579;constitutive=1;rank=4 scaffold_19 ensembl protein_coding_gene 73497 74624 . + . ID=Phyra76580;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000012;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 73497 74624 . + . ID=Phyra76580;Parent=Phyra76580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 73497 73679 . + 0 ID=Phyra76580;Parent=Phyra76580;rank=1 scaffold_19 . exon 73497 73679 . + . ID=Phyra76580.1;Parent=Phyra76580;constitutive=1;rank=1 scaffold_19 . CDS 73751 73873 . + 0 ID=Phyra76580;Parent=Phyra76580;rank=2 scaffold_19 . exon 73751 73873 . + . ID=Phyra76580.2;Parent=Phyra76580;constitutive=1;rank=2 scaffold_19 . CDS 73951 74130 . + 0 ID=Phyra76580;Parent=Phyra76580;rank=3 scaffold_19 . exon 73951 74130 . + . ID=Phyra76580.3;Parent=Phyra76580;constitutive=1;rank=3 scaffold_19 . CDS 74271 74624 . + 0 ID=Phyra76580;Parent=Phyra76580;rank=4 scaffold_19 . exon 74271 74624 . + . ID=Phyra76580.4;Parent=Phyra76580;constitutive=1;rank=4 scaffold_19 ensembl protein_coding_gene 77298 83150 . - . ID=Phyra76582;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000014;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 77298 83150 . - . ID=Phyra76582;Parent=Phyra76582;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 77298 83150 . - 0 ID=Phyra76582;Parent=Phyra76582;rank=1 scaffold_19 . exon 77298 83150 . - . ID=Phyra76582.1;Parent=Phyra76582;constitutive=1;rank=1 scaffold_19 . biological_region 84487 84488 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 83724 86462 . - . ID=Phyra76583;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000015;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 83724 86462 . - . ID=Phyra76583;Parent=Phyra76583;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 83724 86462 . - 0 ID=Phyra76583;Parent=Phyra76583;rank=1 scaffold_19 . exon 83724 86462 . - . ID=Phyra76583.1;Parent=Phyra76583;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 86691 87976 . + . ID=Phyra94553;biotype=protein_coding;external_name=C_scaffold_19000004;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 86691 87976 . + . ID=Phyra94553;Parent=Phyra94553;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 86691 87452 . + 0 ID=Phyra94553;Parent=Phyra94553;rank=1 scaffold_19 . exon 86691 87452 . + . ID=Phyra94553.1;Parent=Phyra94553;constitutive=1;rank=1 scaffold_19 . CDS 87582 87779 . + 0 ID=Phyra94553;Parent=Phyra94553;rank=2 scaffold_19 . exon 87582 87779 . + . ID=Phyra94553.2;Parent=Phyra94553;constitutive=1;rank=2 scaffold_19 . CDS 87822 87912 . + 0 ID=Phyra94553;Parent=Phyra94553;rank=3 scaffold_19 . exon 87822 87912 . + . ID=Phyra94553.3;Parent=Phyra94553;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_19 . CDS 87948 87976 . + 0 ID=Phyra94553;Parent=Phyra94553;rank=4 scaffold_19 . exon 87948 87976 . + . ID=Phyra94553.4;Parent=Phyra94553;constitutive=1;ensembl_phase=1;rank=4 scaffold_19 ensembl protein_coding_gene 88873 90245 . - . ID=Phyra94555;biotype=protein_coding;external_name=C_scaffold_19000006;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 88873 90245 . - . ID=Phyra94555;Parent=Phyra94555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 88873 88981 . - 0 ID=Phyra94555;Parent=Phyra94555;rank=3 scaffold_19 . exon 88873 88981 . - . ID=Phyra94555.3;Parent=Phyra94555;constitutive=1;ensembl_phase=2;rank=3 scaffold_19 . CDS 89207 89444 . - 0 ID=Phyra94555;Parent=Phyra94555;rank=2 scaffold_19 . exon 89207 89444 . - . ID=Phyra94555.2;Parent=Phyra94555;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_19 . CDS 89648 90245 . - 0 ID=Phyra94555;Parent=Phyra94555;rank=1 scaffold_19 . exon 89648 90245 . - . ID=Phyra94555.1;Parent=Phyra94555;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 ensembl protein_coding_gene 90333 91955 . - . ID=Phyra94557;biotype=protein_coding;external_name=C_scaffold_19000008;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 90333 91955 . - . ID=Phyra94557;Parent=Phyra94557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 90333 90743 . - 0 ID=Phyra94557;Parent=Phyra94557;rank=2 scaffold_19 . exon 90333 90743 . - . ID=Phyra94557.2;Parent=Phyra94557;constitutive=1;rank=2 scaffold_19 . CDS 90789 91955 . - 0 ID=Phyra94557;Parent=Phyra94557;rank=1 scaffold_19 . exon 90789 91955 . - . ID=Phyra94557.1;Parent=Phyra94557;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 92562 97103 . + . ID=Phyra94559;biotype=protein_coding;external_name=C_scaffold_19000010;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 92562 97103 . + . ID=Phyra94559;Parent=Phyra94559;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 92562 96887 . + 0 ID=Phyra94559;Parent=Phyra94559;rank=1 scaffold_19 . exon 92562 96887 . + . ID=Phyra94559.1;Parent=Phyra94559;constitutive=1;rank=1 scaffold_19 . CDS 96915 97103 . + 0 ID=Phyra94559;Parent=Phyra94559;rank=2 scaffold_19 . exon 96915 97103 . + . ID=Phyra94559.2;Parent=Phyra94559;constitutive=1;rank=2 scaffold_19 . biological_region 104768 104774 0.999 - . logic_name=eponine scaffold_19 . biological_region 105197 105201 0.999 + . logic_name=eponine scaffold_19 . repeat_region 106891 107074 . + . description=(CAG)n scaffold_19 . repeat_region 106921 106992 . ? . description=dust scaffold_19 . repeat_region 106940 107040 . ? . description=trf scaffold_19 . repeat_region 107002 107065 . ? . description=dust scaffold_19 . repeat_region 107015 107050 . ? . description=trf scaffold_19 . repeat_region 107207 107235 . ? . description=trf scaffold_19 . biological_region 107723 107725 0.999 + . logic_name=eponine scaffold_19 . repeat_region 107769 107801 . ? . description=trf scaffold_19 . biological_region 107810 107813 0.999 - . logic_name=eponine scaffold_19 . biological_region 107833 107837 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 103116 105545 . + . ID=Phyra76587;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000019;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 103116 105545 . + . ID=Phyra76587;Parent=Phyra76587;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 103116 105545 . + 0 ID=Phyra76587;Parent=Phyra76587;rank=1 scaffold_19 . exon 103116 105545 . + . ID=Phyra76587.1;Parent=Phyra76587;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 105824 107548 . + . ID=Phyra76588;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000020;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 105824 107548 . + . ID=Phyra76588;Parent=Phyra76588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 105824 107548 . + 0 ID=Phyra76588;Parent=Phyra76588;rank=1 scaffold_19 . exon 105824 107548 . + . ID=Phyra76588.1;Parent=Phyra76588;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 107754 109469 . + . ID=Phyra76589;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000021;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 107754 109469 . + . ID=Phyra76589;Parent=Phyra76589;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 107754 109023 . + 0 ID=Phyra76589;Parent=Phyra76589;rank=1 scaffold_19 . exon 107754 109023 . + . ID=Phyra76589.1;Parent=Phyra76589;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 109095 109234 . + 0 ID=Phyra76589;Parent=Phyra76589;rank=2 scaffold_19 . CDS 109299 109469 . + 0 ID=Phyra76589;Parent=Phyra76589;rank=3 scaffold_19 . exon 109095 109234 . + . ID=Phyra76589.2;Parent=Phyra76589;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . exon 109299 109469 . + . ID=Phyra76589.3;Parent=Phyra76589;constitutive=1;rank=3 scaffold_19 ensembl protein_coding_gene 109754 111616 . - . ID=Phyra76590;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000022;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 109754 111616 . - . ID=Phyra76590;Parent=Phyra76590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 109754 111616 . - 0 ID=Phyra76590;Parent=Phyra76590;rank=1 scaffold_19 . exon 109754 111616 . - . ID=Phyra76590.1;Parent=Phyra76590;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 111962 112901 . + . ID=Phyra76591;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000023;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 111962 112901 . + . ID=Phyra76591;Parent=Phyra76591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 111962 112081 . + 0 ID=Phyra76591;Parent=Phyra76591;rank=1 scaffold_19 . exon 111962 112081 . + . ID=Phyra76591.1;Parent=Phyra76591;constitutive=1;rank=1 scaffold_19 . CDS 112150 112366 . + 0 ID=Phyra76591;Parent=Phyra76591;rank=2 scaffold_19 . exon 112150 112366 . + . ID=Phyra76591.2;Parent=Phyra76591;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 112448 112536 . + 0 ID=Phyra76591;Parent=Phyra76591;rank=3 scaffold_19 . exon 112448 112536 . + . ID=Phyra76591.3;Parent=Phyra76591;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 112598 112803 . + 0 ID=Phyra76591;Parent=Phyra76591;rank=4 scaffold_19 . exon 112598 112803 . + . ID=Phyra76591.4;Parent=Phyra76591;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_19 . CDS 112895 112901 . + 0 ID=Phyra76591;Parent=Phyra76591;rank=5 scaffold_19 . exon 112895 112901 . + . ID=Phyra76591.5;Parent=Phyra76591;constitutive=1;ensembl_phase=2;rank=5 scaffold_19 ensembl protein_coding_gene 114727 118076 . - . ID=Phyra76592;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000024;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 114727 118076 . - . ID=Phyra76592;Parent=Phyra76592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 114727 115858 . - 0 ID=Phyra76592;Parent=Phyra76592;rank=6 scaffold_19 . exon 114727 115858 . - . ID=Phyra76592.6;Parent=Phyra76592;constitutive=1;ensembl_phase=2;rank=6 scaffold_19 . CDS 115921 116547 . - 0 ID=Phyra76592;Parent=Phyra76592;rank=5 scaffold_19 . exon 115921 116547 . - . ID=Phyra76592.5;Parent=Phyra76592;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_19 . CDS 116572 116666 . - 0 ID=Phyra76592;Parent=Phyra76592;rank=4 scaffold_19 . exon 116572 116666 . - . ID=Phyra76592.4;Parent=Phyra76592;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_19 . CDS 116709 116764 . - 0 ID=Phyra76592;Parent=Phyra76592;rank=3 scaffold_19 . exon 116709 116764 . - . ID=Phyra76592.3;Parent=Phyra76592;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 117209 117570 . - 0 ID=Phyra76592;Parent=Phyra76592;rank=2 scaffold_19 . exon 117209 117570 . - . ID=Phyra76592.2;Parent=Phyra76592;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 117691 118076 . - 0 ID=Phyra76592;Parent=Phyra76592;rank=1 scaffold_19 . exon 117691 118076 . - . ID=Phyra76592.1;Parent=Phyra76592;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . repeat_region 119402 119545 . ? . description=trf scaffold_19 . repeat_region 119678 119816 . ? . description=trf scaffold_19 . biological_region 120451 120452 0.999 - . logic_name=eponine scaffold_19 . repeat_region 121045 121064 . ? . description=trf scaffold_19 . repeat_region 124829 124878 . ? . description=dust scaffold_19 . repeat_region 126459 126602 . ? . description=trf scaffold_19 . repeat_region 126735 126873 . ? . description=trf scaffold_19 . repeat_region 127062 127111 . ? . description=dust scaffold_19 ensembl protein_coding_gene 118858 120924 . + . ID=Phyra76593;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000025;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 118858 120924 . + . ID=Phyra76593;Parent=Phyra76593;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 118858 120924 . + 0 ID=Phyra76593;Parent=Phyra76593;rank=1 scaffold_19 . exon 118858 120924 . + . ID=Phyra76593.1;Parent=Phyra76593;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 121369 124761 . + . ID=Phyra76594;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000026;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 121369 124761 . + . ID=Phyra76594;Parent=Phyra76594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 121369 124761 . + 0 ID=Phyra76594;Parent=Phyra76594;rank=1 scaffold_19 . exon 121369 124761 . + . ID=Phyra76594.1;Parent=Phyra76594;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 127152 130544 . + . ID=Phyra94560;biotype=protein_coding;external_name=C_scaffold_19000011;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 127152 130544 . + . ID=Phyra94560;Parent=Phyra94560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 127152 127470 . + 0 ID=Phyra94560;Parent=Phyra94560;rank=1 scaffold_19 . exon 127152 127470 . + . ID=Phyra94560.1;Parent=Phyra94560;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 127510 128616 . + 0 ID=Phyra94560;Parent=Phyra94560;rank=2 scaffold_19 . exon 127510 128616 . + . ID=Phyra94560.2;Parent=Phyra94560;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 128800 130088 . + 0 ID=Phyra94560;Parent=Phyra94560;rank=3 scaffold_19 . CDS 130119 130544 . + 0 ID=Phyra94560;Parent=Phyra94560;rank=4 scaffold_19 ensembl protein_coding_gene 131266 131694 . - . ID=Phyra76596;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000028;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 131266 131694 . - . ID=Phyra76596;Parent=Phyra76596;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 131266 131694 . - 0 ID=Phyra76596;Parent=Phyra76596;rank=1 scaffold_19 . exon 131266 131694 . - . ID=Phyra76596.1;Parent=Phyra76596;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 133196 135172 . - . ID=Phyra76597;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000029;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 133196 135172 . - . ID=Phyra76597;Parent=Phyra76597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 133196 135172 . - 0 ID=Phyra76597;Parent=Phyra76597;rank=1 scaffold_19 . exon 133196 135172 . - . ID=Phyra76597.1;Parent=Phyra76597;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 136493 138323 . + . ID=Phyra76598;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000030;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 136493 138323 . + . ID=Phyra76598;Parent=Phyra76598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 136493 136621 . + 0 ID=Phyra76598;Parent=Phyra76598;rank=1 scaffold_19 . exon 136493 136621 . + . ID=Phyra76598.1;Parent=Phyra76598;constitutive=1;rank=1 scaffold_19 . CDS 136954 137805 . + 0 ID=Phyra76598;Parent=Phyra76598;rank=2 scaffold_19 . exon 136954 137805 . + . ID=Phyra76598.2;Parent=Phyra76598;constitutive=1;rank=2 scaffold_19 . CDS 137874 138323 . + 0 ID=Phyra76598;Parent=Phyra76598;rank=3 scaffold_19 . exon 128800 130088 . + . ID=Phyra94560.3;Parent=Phyra94560;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . exon 130119 130544 . + . ID=Phyra94560.4;Parent=Phyra94560;constitutive=1;rank=4 scaffold_19 . biological_region 138169 138172 0.999 + . logic_name=eponine scaffold_19 . repeat_region 141697 141738 . ? . description=dust scaffold_19 . repeat_region 141698 141724 . ? . description=trf scaffold_19 . repeat_region 141699 141726 . ? . description=trf scaffold_19 ensembl protein_coding_gene 139660 141195 . - . ID=Phyra43586;biotype=protein_coding;external_name=gwEuk.19.127.1;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 139660 141195 . - . ID=Phyra43586;Parent=Phyra43586;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 139660 140060 . - 0 ID=Phyra43586;Parent=Phyra43586;rank=2 scaffold_19 . exon 139660 140060 . - . ID=Phyra43586.2;Parent=Phyra43586;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 140127 141195 . - 0 ID=Phyra43586;Parent=Phyra43586;rank=1 scaffold_19 . exon 140127 141195 . - . ID=Phyra43586.1;Parent=Phyra43586;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . exon 137874 138323 . + . ID=Phyra76598.3;Parent=Phyra76598;constitutive=1;rank=3 scaffold_19 ensembl protein_coding_gene 145849 147408 . - . ID=Phyra76602;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000034;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 145849 147408 . - . ID=Phyra76602;Parent=Phyra76602;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 145849 147408 . - 0 ID=Phyra76602;Parent=Phyra76602;rank=1 scaffold_19 . exon 145849 147408 . - . ID=Phyra76602.1;Parent=Phyra76602;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 142507 144209 . + . ID=Phyra94567;biotype=protein_coding;external_name=C_scaffold_19000018;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 142507 144209 . + . ID=Phyra94567;Parent=Phyra94567;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 142507 143067 . + 0 ID=Phyra94567;Parent=Phyra94567;rank=1 scaffold_19 . exon 142507 143067 . + . ID=Phyra94567.1;Parent=Phyra94567;constitutive=1;rank=1 scaffold_19 . CDS 143142 143241 . + 0 ID=Phyra94567;Parent=Phyra94567;rank=2 scaffold_19 . exon 143142 143241 . + . ID=Phyra94567.2;Parent=Phyra94567;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 143320 144209 . + 0 ID=Phyra94567;Parent=Phyra94567;rank=3 scaffold_19 . exon 143320 144209 . + . ID=Phyra94567.3;Parent=Phyra94567;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 ensembl protein_coding_gene 144278 144927 . - . ID=Phyra94570;biotype=protein_coding;external_name=C_scaffold_19000021;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 144278 144927 . - . ID=Phyra94570;Parent=Phyra94570;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 144278 144546 . - 0 ID=Phyra94570;Parent=Phyra94570;rank=3 scaffold_19 . exon 144278 144546 . - . ID=Phyra94570.3;Parent=Phyra94570;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 144619 144664 . - 0 ID=Phyra94570;Parent=Phyra94570;rank=2 scaffold_19 . exon 144619 144664 . - . ID=Phyra94570.2;Parent=Phyra94570;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 144874 144927 . - 0 ID=Phyra94570;Parent=Phyra94570;rank=1 scaffold_19 . exon 144874 144927 . - . ID=Phyra94570.1;Parent=Phyra94570;constitutive=1;rank=1 scaffold_19 . repeat_region 156954 157175 . - . description=GypsyPi-1c_I-int scaffold_19 ensembl protein_coding_gene 149146 149865 . - . ID=Phyra76603;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000035;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 149146 149865 . - . ID=Phyra76603;Parent=Phyra76603;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 149146 149865 . - 0 ID=Phyra76603;Parent=Phyra76603;rank=1 scaffold_19 . exon 149146 149865 . - . ID=Phyra76603.1;Parent=Phyra76603;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 152207 153450 . + . ID=Phyra76604;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000036;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 152207 153450 . + . ID=Phyra76604;Parent=Phyra76604;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 152207 153086 . + 0 ID=Phyra76604;Parent=Phyra76604;rank=1 scaffold_19 . exon 152207 153086 . + . ID=Phyra76604.1;Parent=Phyra76604;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 153141 153158 . + 0 ID=Phyra76604;Parent=Phyra76604;rank=2 scaffold_19 . exon 153141 153158 . + . ID=Phyra76604.2;Parent=Phyra76604;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 153183 153222 . + 0 ID=Phyra76604;Parent=Phyra76604;rank=3 scaffold_19 . exon 153183 153222 . + . ID=Phyra76604.3;Parent=Phyra76604;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_19 . CDS 153429 153450 . + 0 ID=Phyra76604;Parent=Phyra76604;rank=4 scaffold_19 . exon 153429 153450 . + . ID=Phyra76604.4;Parent=Phyra76604;constitutive=1;ensembl_phase=2;rank=4 scaffold_19 ensembl protein_coding_gene 155394 156937 . + . ID=Phyra76605;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000037;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 155394 156937 . + . ID=Phyra76605;Parent=Phyra76605;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 155394 156219 . + 0 ID=Phyra76605;Parent=Phyra76605;rank=1 scaffold_19 . exon 155394 156219 . + . ID=Phyra76605.1;Parent=Phyra76605;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 156274 156291 . + 0 ID=Phyra76605;Parent=Phyra76605;rank=2 scaffold_19 . exon 156274 156291 . + . ID=Phyra76605.2;Parent=Phyra76605;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 156316 156355 . + 0 ID=Phyra76605;Parent=Phyra76605;rank=3 scaffold_19 . exon 156316 156355 . + . ID=Phyra76605.3;Parent=Phyra76605;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_19 . CDS 156434 156507 . + 0 ID=Phyra76605;Parent=Phyra76605;rank=4 scaffold_19 . exon 156434 156507 . + . ID=Phyra76605.4;Parent=Phyra76605;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_19 . CDS 156771 156937 . + 0 ID=Phyra76605;Parent=Phyra76605;rank=5 scaffold_19 . exon 156771 156937 . + . ID=Phyra76605.5;Parent=Phyra76605;constitutive=1;ensembl_phase=1;rank=5 scaffold_19 ensembl protein_coding_gene 157190 160437 . - . ID=Phyra76606;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000038;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 157190 160437 . - . ID=Phyra76606;Parent=Phyra76606;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 157190 157196 . - 0 ID=Phyra76606;Parent=Phyra76606;rank=7 scaffold_19 . exon 157190 157196 . - . ID=Phyra76606.7;Parent=Phyra76606;constitutive=1;ensembl_phase=2;rank=7 scaffold_19 . CDS 157237 157328 . - 0 ID=Phyra76606;Parent=Phyra76606;rank=6 scaffold_19 . exon 157237 157328 . - . ID=Phyra76606.6;Parent=Phyra76606;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_19 . CDS 157591 157740 . - 0 ID=Phyra76606;Parent=Phyra76606;rank=5 scaffold_19 . CDS 158077 158556 . - 0 ID=Phyra76606;Parent=Phyra76606;rank=4 scaffold_19 . CDS 158860 159069 . - 0 ID=Phyra76606;Parent=Phyra76606;rank=3 scaffold_19 . CDS 159330 159754 . - 0 ID=Phyra76606;Parent=Phyra76606;rank=2 scaffold_19 . CDS 160146 160437 . - 0 ID=Phyra76606;Parent=Phyra76606;rank=1 scaffold_19 . biological_region 160272 160273 0.999 - . logic_name=eponine scaffold_19 . biological_region 160324 160329 0.999 - . logic_name=eponine scaffold_19 . repeat_region 161363 161476 . ? . description=dust scaffold_19 . repeat_region 165648 166070 . ? . description=dust scaffold_19 . repeat_region 166127 166195 . ? . description=trf scaffold_19 . repeat_region 167125 167174 . ? . description=dust scaffold_19 . exon 157591 157740 . - . ID=Phyra76606.5;Parent=Phyra76606;constitutive=1;rank=5 scaffold_19 . exon 158077 158556 . - . ID=Phyra76606.4;Parent=Phyra76606;constitutive=1;rank=4 scaffold_19 . exon 158860 159069 . - . ID=Phyra76606.3;Parent=Phyra76606;constitutive=1;rank=3 scaffold_19 . exon 159330 159754 . - . ID=Phyra76606.2;Parent=Phyra76606;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . exon 160146 160437 . - . ID=Phyra76606.1;Parent=Phyra76606;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 ensembl protein_coding_gene 162367 165294 . - . ID=Phyra76607;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000039;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 162367 165294 . - . ID=Phyra76607;Parent=Phyra76607;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 162367 162492 . - 0 ID=Phyra76607;Parent=Phyra76607;rank=4 scaffold_19 . exon 162367 162492 . - . ID=Phyra76607.4;Parent=Phyra76607;constitutive=1;rank=4 scaffold_19 . CDS 162563 162723 . - 0 ID=Phyra76607;Parent=Phyra76607;rank=3 scaffold_19 . exon 162563 162723 . - . ID=Phyra76607.3;Parent=Phyra76607;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 162793 165197 . - 0 ID=Phyra76607;Parent=Phyra76607;rank=2 scaffold_19 . exon 162793 165197 . - . ID=Phyra76607.2;Parent=Phyra76607;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 165248 165294 . - 0 ID=Phyra76607;Parent=Phyra76607;rank=1 scaffold_19 . exon 165248 165294 . - . ID=Phyra76607.1;Parent=Phyra76607;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . repeat_region 167791 169141 . - . description=GypsyPi-1c_I-int scaffold_19 . repeat_region 170190 170288 . - . description=GypsyPi-1c_I-int scaffold_19 . repeat_region 170893 171277 . - . description=GypsyPi-1c_I-int scaffold_19 ensembl protein_coding_gene 168344 169366 . - . ID=Phyra76608;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000040;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 168344 169366 . - . ID=Phyra76608;Parent=Phyra76608;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 168344 168826 . - 0 ID=Phyra76608;Parent=Phyra76608;rank=2 scaffold_19 . exon 168344 168826 . - . ID=Phyra76608.2;Parent=Phyra76608;constitutive=1;rank=2 scaffold_19 . CDS 168863 169366 . - 0 ID=Phyra76608;Parent=Phyra76608;rank=1 scaffold_19 . exon 168863 169366 . - . ID=Phyra76608.1;Parent=Phyra76608;constitutive=1;rank=1 scaffold_19 . biological_region 178954 178956 0.999 - . logic_name=eponine scaffold_19 . repeat_region 181012 181089 . ? . description=trf scaffold_19 . biological_region 183076 183078 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 177490 177960 . - . ID=Phyra43598;biotype=protein_coding;external_name=gwEuk.19.139.1;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 177490 177960 . - . ID=Phyra43598;Parent=Phyra43598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 177490 177960 . - 0 ID=Phyra43598;Parent=Phyra43598;rank=1 scaffold_19 . exon 177490 177960 . - . ID=Phyra43598.1;Parent=Phyra43598;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 180216 183679 . + . ID=Phyra76609;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000041;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 180216 183679 . + . ID=Phyra76609;Parent=Phyra76609;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 180216 180318 . + 0 ID=Phyra76609;Parent=Phyra76609;rank=1 scaffold_19 . exon 180216 180318 . + . ID=Phyra76609.1;Parent=Phyra76609;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 180504 183679 . + 0 ID=Phyra76609;Parent=Phyra76609;rank=2 scaffold_19 . exon 180504 183679 . + . ID=Phyra76609.2;Parent=Phyra76609;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 ensembl protein_coding_gene 183933 184328 . - . ID=Phyra76610;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000042;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 183933 184328 . - . ID=Phyra76610;Parent=Phyra76610;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 183933 184328 . - 0 ID=Phyra76610;Parent=Phyra76610;rank=1 scaffold_19 . exon 183933 184328 . - . ID=Phyra76610.1;Parent=Phyra76610;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 193745 194533 . - . ID=Phyra76611;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000043;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 193745 194533 . - . ID=Phyra76611;Parent=Phyra76611;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 193745 194533 . - 0 ID=Phyra76611;Parent=Phyra76611;rank=1 scaffold_19 . exon 193745 194533 . - . ID=Phyra76611.1;Parent=Phyra76611;constitutive=1;rank=1 scaffold_19 . repeat_region 197264 197272 . ? . description=dust scaffold_19 . biological_region 203300 203300 0.999 + . logic_name=eponine scaffold_19 . repeat_region 204325 204333 . ? . description=dust scaffold_19 ensembl protein_coding_gene 205043 207658 . - . ID=Phyra71434;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_19000003;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 205043 207658 . - . ID=Phyra71434;Parent=Phyra71434;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 205043 207658 . - 0 ID=Phyra71434;Parent=Phyra71434;rank=1 scaffold_19 . exon 205043 207658 . - . ID=Phyra71434.1;Parent=Phyra71434;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 197316 198811 . + . ID=Phyra76612;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000044;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 197316 198811 . + . ID=Phyra76612;Parent=Phyra76612;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 197316 198352 . + 0 ID=Phyra76612;Parent=Phyra76612;rank=1 scaffold_19 . exon 197316 198352 . + . ID=Phyra76612.1;Parent=Phyra76612;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 198387 198538 . + 0 ID=Phyra76612;Parent=Phyra76612;rank=2 scaffold_19 . exon 198387 198538 . + . ID=Phyra76612.2;Parent=Phyra76612;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 198756 198811 . + 0 ID=Phyra76612;Parent=Phyra76612;rank=3 scaffold_19 . exon 198756 198811 . + . ID=Phyra76612.3;Parent=Phyra76612;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 ensembl protein_coding_gene 200267 201691 . - . ID=Phyra76613;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000045;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 200267 201691 . - . ID=Phyra76613;Parent=Phyra76613;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 200267 201691 . - 0 ID=Phyra76613;Parent=Phyra76613;rank=1 scaffold_19 . exon 200267 201691 . - . ID=Phyra76613.1;Parent=Phyra76613;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 201969 202973 . + . ID=Phyra76614;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000046;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 201969 202973 . + . ID=Phyra76614;Parent=Phyra76614;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 201969 202973 . + 0 ID=Phyra76614;Parent=Phyra76614;rank=1 scaffold_19 . exon 201969 202973 . + . ID=Phyra76614.1;Parent=Phyra76614;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 203077 204835 . - . ID=Phyra76615;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000047;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 203077 204835 . - . ID=Phyra76615;Parent=Phyra76615;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 203077 203238 . - 0 ID=Phyra76615;Parent=Phyra76615;rank=4 scaffold_19 . exon 203077 203238 . - . ID=Phyra76615.4;Parent=Phyra76615;constitutive=1;rank=4 scaffold_19 . CDS 203316 204207 . - 0 ID=Phyra76615;Parent=Phyra76615;rank=3 scaffold_19 . exon 203316 204207 . - . ID=Phyra76615.3;Parent=Phyra76615;constitutive=1;ensembl_phase=2;rank=3 scaffold_19 . CDS 204377 204447 . - 0 ID=Phyra76615;Parent=Phyra76615;rank=2 scaffold_19 . exon 204377 204447 . - . ID=Phyra76615.2;Parent=Phyra76615;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_19 . CDS 204512 204835 . - 0 ID=Phyra76615;Parent=Phyra76615;rank=1 scaffold_19 . exon 204512 204835 . - . ID=Phyra76615.1;Parent=Phyra76615;constitutive=1;rank=1 scaffold_19 . repeat_region 213805 213825 . ? . description=trf scaffold_19 . repeat_region 214857 214987 . ? . description=trf scaffold_19 ensembl protein_coding_gene 211526 211969 . + . ID=Phyra43470;biotype=protein_coding;external_name=gwEuk.19.11.1;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 211526 211969 . + . ID=Phyra43470;Parent=Phyra43470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 211526 211969 . + 0 ID=Phyra43470;Parent=Phyra43470;rank=1 scaffold_19 . exon 211526 211969 . + . ID=Phyra43470.1;Parent=Phyra43470;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 210101 210607 . - . ID=Phyra71435;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_19000004;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 210101 210607 . - . ID=Phyra71435;Parent=Phyra71435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 210101 210607 . - 0 ID=Phyra71435;Parent=Phyra71435;rank=1 scaffold_19 . exon 210101 210607 . - . ID=Phyra71435.1;Parent=Phyra71435;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 207763 208597 . - . ID=Phyra76617;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000049;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 207763 208597 . - . ID=Phyra76617;Parent=Phyra76617;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 207763 208597 . - 0 ID=Phyra76617;Parent=Phyra76617;rank=1 scaffold_19 . exon 207763 208597 . - . ID=Phyra76617.1;Parent=Phyra76617;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 ensembl protein_coding_gene 208964 209527 . - . ID=Phyra76618;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000050;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 208964 209527 . - . ID=Phyra76618;Parent=Phyra76618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 208964 209527 . - 0 ID=Phyra76618;Parent=Phyra76618;rank=1 scaffold_19 . exon 208964 209527 . - . ID=Phyra76618.1;Parent=Phyra76618;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 212099 214300 . - . ID=Phyra76621;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000053;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 212099 214300 . - . ID=Phyra76621;Parent=Phyra76621;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 212099 214300 . - 0 ID=Phyra76621;Parent=Phyra76621;rank=1 scaffold_19 . exon 212099 214300 . - . ID=Phyra76621.1;Parent=Phyra76621;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 215554 216819 . + . ID=Phyra76622;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000054;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 215554 216819 . + . ID=Phyra76622;Parent=Phyra76622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 215554 216819 . + 0 ID=Phyra76622;Parent=Phyra76622;rank=1 scaffold_19 . exon 215554 216819 . + . ID=Phyra76622.1;Parent=Phyra76622;constitutive=1;rank=1 scaffold_19 . biological_region 223366 223366 0.999 - . logic_name=eponine scaffold_19 . biological_region 223968 223973 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 221626 222960 . + . ID=Phyra43486;biotype=protein_coding;external_name=gwEuk.19.27.1;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 221626 222960 . + . ID=Phyra43486;Parent=Phyra43486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 221626 222502 . + 0 ID=Phyra43486;Parent=Phyra43486;rank=1 scaffold_19 . exon 221626 222502 . + . ID=Phyra43486.1;Parent=Phyra43486;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 222578 222960 . + 0 ID=Phyra43486;Parent=Phyra43486;rank=2 scaffold_19 . exon 222578 222960 . + . ID=Phyra43486.2;Parent=Phyra43486;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 ensembl protein_coding_gene 216947 220990 . - . ID=Phyra76623;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000055;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 216947 220990 . - . ID=Phyra76623;Parent=Phyra76623;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 216947 220990 . - 0 ID=Phyra76623;Parent=Phyra76623;rank=1 scaffold_19 . exon 216947 220990 . - . ID=Phyra76623.1;Parent=Phyra76623;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 223166 224719 . + . ID=Phyra76625;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000057;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 223166 224719 . + . ID=Phyra76625;Parent=Phyra76625;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 223166 224719 . + 0 ID=Phyra76625;Parent=Phyra76625;rank=1 scaffold_19 . exon 223166 224719 . + . ID=Phyra76625.1;Parent=Phyra76625;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 225183 229493 . - . ID=Phyra76626;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000058;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 225183 229493 . - . ID=Phyra76626;Parent=Phyra76626;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 225183 229493 . - 0 ID=Phyra76626;Parent=Phyra76626;rank=1 scaffold_19 . exon 225183 229493 . - . ID=Phyra76626.1;Parent=Phyra76626;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 231183 235514 . - . ID=Phyra76627;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000059;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 231183 235514 . - . ID=Phyra76627;Parent=Phyra76627;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 231183 235514 . - 0 ID=Phyra76627;Parent=Phyra76627;rank=1 scaffold_19 . exon 231183 235514 . - . ID=Phyra76627.1;Parent=Phyra76627;constitutive=1;rank=1 scaffold_19 . biological_region 243415 243415 0.999 - . logic_name=eponine scaffold_19 . repeat_region 244136 244182 . ? . description=trf scaffold_19 . repeat_region 244209 244236 . ? . description=trf scaffold_19 ensembl protein_coding_gene 236255 236911 . - . ID=Phyra76628;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000060;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 236255 236911 . - . ID=Phyra76628;Parent=Phyra76628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 236255 236911 . - 0 ID=Phyra76628;Parent=Phyra76628;rank=1 scaffold_19 . exon 236255 236911 . - . ID=Phyra76628.1;Parent=Phyra76628;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 237615 238859 . - . ID=Phyra76629;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000061;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 237615 238859 . - . ID=Phyra76629;Parent=Phyra76629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 237615 238859 . - 0 ID=Phyra76629;Parent=Phyra76629;rank=1 scaffold_19 . exon 237615 238859 . - . ID=Phyra76629.1;Parent=Phyra76629;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 240177 240590 . - . ID=Phyra76630;biotype=protein_coding;description=Elicitin-like protein RAL13C [Source:UniProtKB/TrEMBL%3BAcc:Q2N0C8];external_name=fgenesh1_pg.C_scaffold_19000062;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 240177 240590 . - . ID=Phyra76630;Parent=Phyra76630;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 240177 240590 . - 0 ID=Phyra76630;Parent=Phyra76630;rank=1 scaffold_19 . exon 240177 240590 . - . ID=Phyra76630.1;Parent=Phyra76630;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 240798 242279 . - . ID=Phyra76631;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000063;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 240798 242279 . - . ID=Phyra76631;Parent=Phyra76631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 240798 242279 . - 0 ID=Phyra76631;Parent=Phyra76631;rank=1 scaffold_19 . exon 240798 242279 . - . ID=Phyra76631.1;Parent=Phyra76631;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 242796 244318 . - . ID=Phyra76632;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000064;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 242796 244318 . - . ID=Phyra76632;Parent=Phyra76632;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 242796 243988 . - 0 ID=Phyra76632;Parent=Phyra76632;rank=2 scaffold_19 . exon 242796 243988 . - . ID=Phyra76632.2;Parent=Phyra76632;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 244057 244318 . - 0 ID=Phyra76632;Parent=Phyra76632;rank=1 scaffold_19 . exon 244057 244318 . - . ID=Phyra76632.1;Parent=Phyra76632;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 ensembl protein_coding_gene 245667 247281 . - . ID=Phyra76633;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000065;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 245667 247281 . - . ID=Phyra76633;Parent=Phyra76633;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 245667 246678 . - 0 ID=Phyra76633;Parent=Phyra76633;rank=3 scaffold_19 . exon 245667 246678 . - . ID=Phyra76633.3;Parent=Phyra76633;constitutive=1;ensembl_phase=2;rank=3 scaffold_19 . CDS 246749 246932 . - 0 ID=Phyra76633;Parent=Phyra76633;rank=2 scaffold_19 . CDS 247002 247281 . - 0 ID=Phyra76633;Parent=Phyra76633;rank=1 scaffold_19 . exon 246749 246932 . - . ID=Phyra76633.2;Parent=Phyra76633;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_19 . exon 247002 247281 . - . ID=Phyra76633.1;Parent=Phyra76633;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 ensembl protein_coding_gene 247931 249458 . - . ID=Phyra76634;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000066;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 247931 249458 . - . ID=Phyra76634;Parent=Phyra76634;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 247931 249117 . - 0 ID=Phyra76634;Parent=Phyra76634;rank=2 scaffold_19 . exon 247931 249117 . - . ID=Phyra76634.2;Parent=Phyra76634;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 249191 249458 . - 0 ID=Phyra76634;Parent=Phyra76634;rank=1 scaffold_19 . exon 249191 249458 . - . ID=Phyra76634.1;Parent=Phyra76634;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 ensembl protein_coding_gene 250092 251555 . - . ID=Phyra76635;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000067;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 250092 251555 . - . ID=Phyra76635;Parent=Phyra76635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 250092 251555 . - 0 ID=Phyra76635;Parent=Phyra76635;rank=1 scaffold_19 . exon 250092 251555 . - . ID=Phyra76635.1;Parent=Phyra76635;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 252432 253886 . - . ID=Phyra76636;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000068;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 252432 253886 . - . ID=Phyra76636;Parent=Phyra76636;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 252432 253886 . - 0 ID=Phyra76636;Parent=Phyra76636;rank=1 scaffold_19 . exon 252432 253886 . - . ID=Phyra76636.1;Parent=Phyra76636;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 254864 256324 . - . ID=Phyra76637;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000069;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 254864 256324 . - . ID=Phyra76637;Parent=Phyra76637;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 254864 256324 . - 0 ID=Phyra76637;Parent=Phyra76637;rank=1 scaffold_19 . exon 254864 256324 . - . ID=Phyra76637.1;Parent=Phyra76637;constitutive=1;rank=1 scaffold_19 . repeat_region 257832 257851 . ? . description=trf scaffold_19 . repeat_region 258263 258309 . ? . description=trf scaffold_19 . repeat_region 260826 260835 . ? . description=dust scaffold_19 . repeat_region 261381 261407 . ? . description=trf scaffold_19 . repeat_region 262131 262170 . ? . description=trf scaffold_19 . repeat_region 262678 262686 . ? . description=dust scaffold_19 . biological_region 263119 263124 0.999 - . logic_name=eponine scaffold_19 . biological_region 263136 263142 0.999 - . logic_name=eponine scaffold_19 . biological_region 263925 263928 0.999 - . logic_name=eponine scaffold_19 . biological_region 265440 265445 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 257957 260776 . + . ID=Phyra76638;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000070;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 257957 260776 . + . ID=Phyra76638;Parent=Phyra76638;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 257957 260776 . + 0 ID=Phyra76638;Parent=Phyra76638;rank=1 scaffold_19 . exon 257957 260776 . + . ID=Phyra76638.1;Parent=Phyra76638;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 261070 261933 . + . ID=Phyra76639;biotype=protein_coding;description=Elicitin-like protein RAL13D [Source:UniProtKB/TrEMBL%3BAcc:Q2N0C7];external_name=fgenesh1_pg.C_scaffold_19000071;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 261070 261933 . + . ID=Phyra76639;Parent=Phyra76639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 261070 261933 . + 0 ID=Phyra76639;Parent=Phyra76639;rank=1 scaffold_19 . exon 261070 261933 . + . ID=Phyra76639.1;Parent=Phyra76639;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 262694 264427 . + . ID=Phyra76640;biotype=protein_coding;description=Elicitin-like protein RAL13E [Source:UniProtKB/TrEMBL%3BAcc:Q2N0C6];external_name=fgenesh1_pg.C_scaffold_19000072;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 262694 264427 . + . ID=Phyra76640;Parent=Phyra76640;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 262694 263166 . + 0 ID=Phyra76640;Parent=Phyra76640;rank=1 scaffold_19 . exon 262694 263166 . + . ID=Phyra76640.1;Parent=Phyra76640;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 263708 263805 . + 0 ID=Phyra76640;Parent=Phyra76640;rank=2 scaffold_19 . exon 263708 263805 . + . ID=Phyra76640.2;Parent=Phyra76640;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 263825 264382 . + 0 ID=Phyra76640;Parent=Phyra76640;rank=3 scaffold_19 . exon 263825 264382 . + . ID=Phyra76640.3;Parent=Phyra76640;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 264414 264427 . + 0 ID=Phyra76640;Parent=Phyra76640;rank=4 scaffold_19 . exon 264414 264427 . + . ID=Phyra76640.4;Parent=Phyra76640;constitutive=1;ensembl_phase=1;rank=4 scaffold_19 ensembl protein_coding_gene 265304 266536 . + . ID=Phyra76641;biotype=protein_coding;description=Elicitin-like protein RAL13A [Source:UniProtKB/TrEMBL%3BAcc:Q2N0D0];external_name=fgenesh1_pg.C_scaffold_19000073;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 265304 266536 . + . ID=Phyra76641;Parent=Phyra76641;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 265304 266536 . + 0 ID=Phyra76641;Parent=Phyra76641;rank=1 scaffold_19 . exon 265304 266536 . + . ID=Phyra76641.1;Parent=Phyra76641;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 267332 268075 . + . ID=Phyra76642;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000074;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 267332 268075 . + . ID=Phyra76642;Parent=Phyra76642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 267332 268075 . + 0 ID=Phyra76642;Parent=Phyra76642;rank=1 scaffold_19 . exon 267332 268075 . + . ID=Phyra76642.1;Parent=Phyra76642;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 268677 271384 . + . ID=Phyra76643;biotype=protein_coding;description=Elicitin-like protein RAL13B [Source:UniProtKB/TrEMBL%3BAcc:Q2N0C9];external_name=fgenesh1_pg.C_scaffold_19000075;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 268677 271384 . + . ID=Phyra76643;Parent=Phyra76643;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 268677 269771 . + 0 ID=Phyra76643;Parent=Phyra76643;rank=1 scaffold_19 . exon 268677 269771 . + . ID=Phyra76643.1;Parent=Phyra76643;constitutive=1;rank=1 scaffold_19 . CDS 269906 271384 . + 0 ID=Phyra76643;Parent=Phyra76643;rank=2 scaffold_19 . exon 269906 271384 . + . ID=Phyra76643.2;Parent=Phyra76643;constitutive=1;rank=2 scaffold_19 ensembl protein_coding_gene 271849 272496 . - . ID=Phyra76644;biotype=protein_coding;description=Elicitin-like protein RAL13F [Source:UniProtKB/TrEMBL%3BAcc:Q2N0C5];external_name=fgenesh1_pg.C_scaffold_19000076;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 271849 272496 . - . ID=Phyra76644;Parent=Phyra76644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 271849 272496 . - 0 ID=Phyra76644;Parent=Phyra76644;rank=1 scaffold_19 . exon 271849 272496 . - . ID=Phyra76644.1;Parent=Phyra76644;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 273265 276384 . - . ID=Phyra76645;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000077;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 273265 276384 . - . ID=Phyra76645;Parent=Phyra76645;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 273265 274689 . - 0 ID=Phyra76645;Parent=Phyra76645;rank=3 scaffold_19 . exon 273265 274689 . - . ID=Phyra76645.3;Parent=Phyra76645;constitutive=1;rank=3 scaffold_19 . CDS 274829 274838 . - 0 ID=Phyra76645;Parent=Phyra76645;rank=2 scaffold_19 . exon 274829 274838 . - . ID=Phyra76645.2;Parent=Phyra76645;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 275207 276384 . - 0 ID=Phyra76645;Parent=Phyra76645;rank=1 scaffold_19 . exon 275207 276384 . - . ID=Phyra76645.1;Parent=Phyra76645;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . repeat_region 283632 283668 . ? . description=trf scaffold_19 . repeat_region 283662 283686 . ? . description=trf scaffold_19 ensembl protein_coding_gene 281956 283023 . - . ID=Phyra71438;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_19000007;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 281956 283023 . - . ID=Phyra71438;Parent=Phyra71438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 281956 282395 . - 0 ID=Phyra71438;Parent=Phyra71438;rank=3 scaffold_19 . exon 281956 282395 . - . ID=Phyra71438.3;Parent=Phyra71438;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 282501 282766 . - 0 ID=Phyra71438;Parent=Phyra71438;rank=2 scaffold_19 . exon 282501 282766 . - . ID=Phyra71438.2;Parent=Phyra71438;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 282839 283023 . - 0 ID=Phyra71438;Parent=Phyra71438;rank=1 scaffold_19 . exon 282839 283023 . - . ID=Phyra71438.1;Parent=Phyra71438;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 ensembl protein_coding_gene 277347 278279 . + . ID=Phyra76646;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000078;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 277347 278279 . + . ID=Phyra76646;Parent=Phyra76646;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 277347 278279 . + 0 ID=Phyra76646;Parent=Phyra76646;rank=1 scaffold_19 . exon 277347 278279 . + . ID=Phyra76646.1;Parent=Phyra76646;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 283817 285154 . + . ID=Phyra76648;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000080;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 283817 285154 . + . ID=Phyra76648;Parent=Phyra76648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 283817 285154 . + 0 ID=Phyra76648;Parent=Phyra76648;rank=1 scaffold_19 . exon 283817 285154 . + . ID=Phyra76648.1;Parent=Phyra76648;constitutive=1;rank=1 scaffold_19 . biological_region 286068 286070 0.999 + . logic_name=eponine scaffold_19 . biological_region 286160 286168 0.999 - . logic_name=eponine scaffold_19 . biological_region 286166 286168 0.999 + . logic_name=eponine scaffold_19 . repeat_region 289018 289181 . ? . description=dust scaffold_19 . biological_region 290515 290517 0.999 - . logic_name=eponine scaffold_19 . biological_region 291318 291318 0.999 + . logic_name=eponine scaffold_19 . biological_region 291837 291839 0.999 - . logic_name=eponine scaffold_19 . biological_region 295155 295156 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 285828 286265 . - . ID=Phyra76649;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000081;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 285828 286265 . - . ID=Phyra76649;Parent=Phyra76649;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 285828 286265 . - 0 ID=Phyra76649;Parent=Phyra76649;rank=1 scaffold_19 . exon 285828 286265 . - . ID=Phyra76649.1;Parent=Phyra76649;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 289685 290585 . + . ID=Phyra76650;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000082;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 289685 290585 . + . ID=Phyra76650;Parent=Phyra76650;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 289685 290164 . + 0 ID=Phyra76650;Parent=Phyra76650;rank=1 scaffold_19 . exon 289685 290164 . + . ID=Phyra76650.1;Parent=Phyra76650;constitutive=1;rank=1 scaffold_19 . CDS 290235 290585 . + 0 ID=Phyra76650;Parent=Phyra76650;rank=2 scaffold_19 . exon 290235 290585 . + . ID=Phyra76650.2;Parent=Phyra76650;constitutive=1;rank=2 scaffold_19 ensembl protein_coding_gene 291333 293348 . + . ID=Phyra76651;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000083;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 291333 293348 . + . ID=Phyra76651;Parent=Phyra76651;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 291333 291495 . + 0 ID=Phyra76651;Parent=Phyra76651;rank=1 scaffold_19 . exon 291333 291495 . + . ID=Phyra76651.1;Parent=Phyra76651;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 291530 291894 . + 0 ID=Phyra76651;Parent=Phyra76651;rank=2 scaffold_19 . exon 291530 291894 . + . ID=Phyra76651.2;Parent=Phyra76651;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 291947 292233 . + 0 ID=Phyra76651;Parent=Phyra76651;rank=3 scaffold_19 . exon 291947 292233 . + . ID=Phyra76651.3;Parent=Phyra76651;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_19 . CDS 292616 293348 . + 0 ID=Phyra76651;Parent=Phyra76651;rank=4 scaffold_19 . exon 292616 293348 . + . ID=Phyra76651.4;Parent=Phyra76651;constitutive=1;ensembl_phase=2;rank=4 scaffold_19 ensembl protein_coding_gene 293419 294876 . - . ID=Phyra76652;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000084;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 293419 294876 . - . ID=Phyra76652;Parent=Phyra76652;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 293419 294876 . - 0 ID=Phyra76652;Parent=Phyra76652;rank=1 scaffold_19 . exon 293419 294876 . - . ID=Phyra76652.1;Parent=Phyra76652;constitutive=1;rank=1 scaffold_19 . repeat_region 295403 295450 . ? . description=trf scaffold_19 ensembl protein_coding_gene 299569 301395 . - . ID=Phyra43509;biotype=protein_coding;external_name=gwEuk.19.50.1;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 299569 301395 . - . ID=Phyra43509;Parent=Phyra43509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 299569 301395 . - 0 ID=Phyra43509;Parent=Phyra43509;rank=1 scaffold_19 . exon 299569 301395 . - . ID=Phyra43509.1;Parent=Phyra43509;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 297264 299343 . + . ID=Phyra94583;biotype=protein_coding;external_name=C_scaffold_19000034;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 297264 299343 . + . ID=Phyra94583;Parent=Phyra94583;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 297264 297624 . + 0 ID=Phyra94583;Parent=Phyra94583;rank=1 scaffold_19 . exon 297264 297624 . + . ID=Phyra94583.1;Parent=Phyra94583;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 297889 299225 . + 0 ID=Phyra94583;Parent=Phyra94583;rank=2 scaffold_19 . exon 297889 299225 . + . ID=Phyra94583.2;Parent=Phyra94583;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 299275 299343 . + 0 ID=Phyra94583;Parent=Phyra94583;rank=3 scaffold_19 . exon 299275 299343 . + . ID=Phyra94583.3;Parent=Phyra94583;constitutive=1;rank=3 scaffold_19 . repeat_region 312214 312221 . ? . description=dust scaffold_19 . repeat_region 319086 319147 . ? . description=trf scaffold_19 . repeat_region 320426 320472 . ? . description=trf scaffold_19 . repeat_region 320487 320514 . ? . description=trf scaffold_19 . biological_region 320804 320805 0.999 + . logic_name=eponine scaffold_19 . repeat_region 330728 330736 . ? . description=dust scaffold_19 . repeat_region 332154 332162 . ? . description=dust scaffold_19 ensembl protein_coding_gene 326160 326660 . - . ID=Phyra76655;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000087;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 326160 326660 . - . ID=Phyra76655;Parent=Phyra76655;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 326160 326660 . - 0 ID=Phyra76655;Parent=Phyra76655;rank=1 scaffold_19 . exon 326160 326660 . - . ID=Phyra76655.1;Parent=Phyra76655;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 329502 330374 . + . ID=Phyra76656;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000088;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 329502 330374 . + . ID=Phyra76656;Parent=Phyra76656;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 329502 330040 . + 0 ID=Phyra76656;Parent=Phyra76656;rank=1 scaffold_19 . exon 329502 330040 . + . ID=Phyra76656.1;Parent=Phyra76656;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 330125 330374 . + 0 ID=Phyra76656;Parent=Phyra76656;rank=2 scaffold_19 . exon 330125 330374 . + . ID=Phyra76656.2;Parent=Phyra76656;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 ensembl protein_coding_gene 331117 331836 . - . ID=Phyra76657;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000089;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 331117 331836 . - . ID=Phyra76657;Parent=Phyra76657;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 331117 331836 . - 0 ID=Phyra76657;Parent=Phyra76657;rank=1 scaffold_19 . exon 331117 331836 . - . ID=Phyra76657.1;Parent=Phyra76657;constitutive=1;rank=1 scaffold_19 . repeat_region 340234 340284 . ? . description=trf scaffold_19 . biological_region 341369 341374 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 339400 339939 . + . ID=Phyra76658;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000090;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 339400 339939 . + . ID=Phyra76658;Parent=Phyra76658;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 339400 339939 . + 0 ID=Phyra76658;Parent=Phyra76658;rank=1 scaffold_19 . exon 339400 339939 . + . ID=Phyra76658.1;Parent=Phyra76658;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 340867 341205 . + . ID=Phyra76659;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000091;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 340867 341205 . + . ID=Phyra76659;Parent=Phyra76659;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 340867 341205 . + 0 ID=Phyra76659;Parent=Phyra76659;rank=1 scaffold_19 . exon 340867 341205 . + . ID=Phyra76659.1;Parent=Phyra76659;constitutive=1;rank=1 scaffold_19 . repeat_region 351100 351112 . ? . description=dust scaffold_19 . biological_region 359682 359683 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 363972 364349 . - . ID=Phyra76660;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000092;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 363972 364349 . - . ID=Phyra76660;Parent=Phyra76660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 363972 364349 . - 0 ID=Phyra76660;Parent=Phyra76660;rank=1 scaffold_19 . exon 363972 364349 . - . ID=Phyra76660.1;Parent=Phyra76660;constitutive=1;rank=1 scaffold_19 . repeat_region 367092 367100 . ? . description=dust scaffold_19 . repeat_region 371575 371605 . ? . description=trf scaffold_19 . repeat_region 373042 378360 . ? . description=dust scaffold_19 ensembl protein_coding_gene 372148 373041 . - . ID=Phyra43521;biotype=protein_coding;external_name=gwEuk.19.62.1;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 372148 373041 . - . ID=Phyra43521;Parent=Phyra43521;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 372148 372731 . - 0 ID=Phyra43521;Parent=Phyra43521;rank=2 scaffold_19 . exon 372148 372731 . - . ID=Phyra43521.2;Parent=Phyra43521;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 372912 373041 . - 0 ID=Phyra43521;Parent=Phyra43521;rank=1 scaffold_19 . exon 372912 373041 . - . ID=Phyra43521.1;Parent=Phyra43521;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . repeat_region 379282 384458 . ? . description=dust scaffold_19 . biological_region 384844 384844 0.999 + . logic_name=eponine scaffold_19 . repeat_region 384907 384944 . ? . description=dust scaffold_19 . repeat_region 384914 384944 . ? . description=trf scaffold_19 . repeat_region 385051 385061 . ? . description=dust scaffold_19 . repeat_region 385771 385779 . ? . description=dust scaffold_19 . repeat_region 388037 388055 . ? . description=dust scaffold_19 ensembl protein_coding_gene 399358 400029 . + . ID=Phyra76662;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000094;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 399358 400029 . + . ID=Phyra76662;Parent=Phyra76662;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 399358 399463 . + 0 ID=Phyra76662;Parent=Phyra76662;rank=1 scaffold_19 . exon 399358 399463 . + . ID=Phyra76662.1;Parent=Phyra76662;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 399583 399864 . + 0 ID=Phyra76662;Parent=Phyra76662;rank=2 scaffold_19 . exon 399583 399864 . + . ID=Phyra76662.2;Parent=Phyra76662;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 399902 400029 . + 0 ID=Phyra76662;Parent=Phyra76662;rank=3 scaffold_19 . exon 399902 400029 . + . ID=Phyra76662.3;Parent=Phyra76662;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . repeat_region 404042 404049 . ? . description=dust scaffold_19 . repeat_region 404425 404442 . ? . description=dust scaffold_19 . repeat_region 405865 405892 . ? . description=trf scaffold_19 . repeat_region 410573 410742 . ? . description=trf scaffold_19 . repeat_region 410573 410750 . ? . description=trf scaffold_19 . repeat_region 410615 410757 . ? . description=trf scaffold_19 . biological_region 411918 411921 0.999 - . logic_name=eponine scaffold_19 . biological_region 412643 412646 0.999 - . logic_name=eponine scaffold_19 . repeat_region 412743 412837 . ? . description=trf scaffold_19 . biological_region 412994 412996 0.999 - . logic_name=eponine scaffold_19 . biological_region 413021 413026 0.999 - . logic_name=eponine scaffold_19 . biological_region 413077 413082 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 405215 405553 . + . ID=Phyra76663;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000095;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 405215 405553 . + . ID=Phyra76663;Parent=Phyra76663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 405215 405553 . + 0 ID=Phyra76663;Parent=Phyra76663;rank=1 scaffold_19 . exon 405215 405553 . + . ID=Phyra76663.1;Parent=Phyra76663;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 409959 411094 . + . ID=Phyra76664;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000096;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 409959 411094 . + . ID=Phyra76664;Parent=Phyra76664;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 409959 410247 . + 0 ID=Phyra76664;Parent=Phyra76664;rank=1 scaffold_19 . exon 409959 410247 . + . ID=Phyra76664.1;Parent=Phyra76664;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 410364 411094 . + 0 ID=Phyra76664;Parent=Phyra76664;rank=2 scaffold_19 . exon 410364 411094 . + . ID=Phyra76664.2;Parent=Phyra76664;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 ensembl protein_coding_gene 412096 415872 . + . ID=Phyra76665;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000097;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 412096 415872 . + . ID=Phyra76665;Parent=Phyra76665;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 412096 412444 . + 0 ID=Phyra76665;Parent=Phyra76665;rank=1 scaffold_19 . exon 412096 412444 . + . ID=Phyra76665.1;Parent=Phyra76665;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 412504 413221 . + 0 ID=Phyra76665;Parent=Phyra76665;rank=2 scaffold_19 . exon 412504 413221 . + . ID=Phyra76665.2;Parent=Phyra76665;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_19 . CDS 413406 413855 . + 0 ID=Phyra76665;Parent=Phyra76665;rank=3 scaffold_19 . CDS 414162 414813 . + 0 ID=Phyra76665;Parent=Phyra76665;rank=4 scaffold_19 . CDS 415201 415662 . + 0 ID=Phyra76665;Parent=Phyra76665;rank=5 scaffold_19 . CDS 415732 415872 . + 0 ID=Phyra76665;Parent=Phyra76665;rank=6 scaffold_19 . exon 413406 413855 . + . ID=Phyra76665.3;Parent=Phyra76665;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_19 . exon 414162 414813 . + . ID=Phyra76665.4;Parent=Phyra76665;constitutive=1;ensembl_phase=2;rank=4 scaffold_19 . exon 415201 415662 . + . ID=Phyra76665.5;Parent=Phyra76665;constitutive=1;rank=5 scaffold_19 . exon 415732 415872 . + . ID=Phyra76665.6;Parent=Phyra76665;constitutive=1;rank=6 scaffold_19 ensembl protein_coding_gene 416187 417289 . - . ID=Phyra76666;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000098;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 416187 417289 . - . ID=Phyra76666;Parent=Phyra76666;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 416187 416945 . - 0 ID=Phyra76666;Parent=Phyra76666;rank=4 scaffold_19 . exon 416187 416945 . - . ID=Phyra76666.4;Parent=Phyra76666;constitutive=1;rank=4 scaffold_19 . CDS 417012 417127 . - 0 ID=Phyra76666;Parent=Phyra76666;rank=3 scaffold_19 . exon 417012 417127 . - . ID=Phyra76666.3;Parent=Phyra76666;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 417193 417226 . - 0 ID=Phyra76666;Parent=Phyra76666;rank=2 scaffold_19 . exon 417193 417226 . - . ID=Phyra76666.2;Parent=Phyra76666;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 417287 417289 . - 0 ID=Phyra76666;Parent=Phyra76666;rank=1 scaffold_19 . exon 417287 417289 . - . ID=Phyra76666.1;Parent=Phyra76666;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 417959 419126 . + . ID=Phyra76667;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000099;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 417959 419126 . + . ID=Phyra76667;Parent=Phyra76667;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 417959 418015 . + 0 ID=Phyra76667;Parent=Phyra76667;rank=1 scaffold_19 . exon 417959 418015 . + . ID=Phyra76667.1;Parent=Phyra76667;constitutive=1;rank=1 scaffold_19 . CDS 418089 419126 . + 0 ID=Phyra76667;Parent=Phyra76667;rank=2 scaffold_19 . exon 418089 419126 . + . ID=Phyra76667.2;Parent=Phyra76667;constitutive=1;rank=2 scaffold_19 ensembl protein_coding_gene 420057 420965 . - . ID=Phyra76668;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000100;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 420057 420965 . - . ID=Phyra76668;Parent=Phyra76668;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 420057 420965 . - 0 ID=Phyra76668;Parent=Phyra76668;rank=1 scaffold_19 . exon 420057 420965 . - . ID=Phyra76668.1;Parent=Phyra76668;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 421820 422926 . + . ID=Phyra76669;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000101;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 421820 422926 . + . ID=Phyra76669;Parent=Phyra76669;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 421820 422262 . + 0 ID=Phyra76669;Parent=Phyra76669;rank=1 scaffold_19 . exon 421820 422262 . + . ID=Phyra76669.1;Parent=Phyra76669;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 422395 422926 . + 0 ID=Phyra76669;Parent=Phyra76669;rank=2 scaffold_19 . exon 422395 422926 . + . ID=Phyra76669.2;Parent=Phyra76669;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . biological_region 423474 423477 0.999 - . logic_name=eponine scaffold_19 . biological_region 428769 428769 0.999 + . logic_name=eponine scaffold_19 . biological_region 428808 428811 0.999 + . logic_name=eponine scaffold_19 . repeat_region 429506 429555 . ? . description=dust scaffold_19 . biological_region 430491 430492 0.999 - . logic_name=eponine scaffold_19 . biological_region 430621 430622 0.999 - . logic_name=eponine scaffold_19 . biological_region 431101 431106 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 427199 429349 . + . ID=Phyra76670;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000102;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 427199 429349 . + . ID=Phyra76670;Parent=Phyra76670;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 427199 429349 . + 0 ID=Phyra76670;Parent=Phyra76670;rank=1 scaffold_19 . exon 427199 429349 . + . ID=Phyra76670.1;Parent=Phyra76670;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 431907 432884 . - . ID=Phyra76671;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000103;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 431907 432884 . - . ID=Phyra76671;Parent=Phyra76671;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 431907 432884 . - 0 ID=Phyra76671;Parent=Phyra76671;rank=1 scaffold_19 . exon 431907 432884 . - . ID=Phyra76671.1;Parent=Phyra76671;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 437356 437742 . - . ID=Phyra76672;biotype=protein_coding;description=Putative effector protein Avh120 [Source:UniProtKB/TrEMBL%3BAcc:C0J5D4];external_name=fgenesh1_pg.C_scaffold_19000104;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 437356 437742 . - . ID=Phyra76672;Parent=Phyra76672;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 437356 437742 . - 0 ID=Phyra76672;Parent=Phyra76672;rank=1 scaffold_19 . exon 437356 437742 . - . ID=Phyra76672.1;Parent=Phyra76672;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 441666 443936 . - . ID=Phyra76673;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000105;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 441666 443936 . - . ID=Phyra76673;Parent=Phyra76673;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 441666 443936 . - 0 ID=Phyra76673;Parent=Phyra76673;rank=1 scaffold_19 . exon 441666 443936 . - . ID=Phyra76673.1;Parent=Phyra76673;constitutive=1;rank=1 scaffold_19 . biological_region 443331 443332 0.999 - . logic_name=eponine scaffold_19 . repeat_region 443453 443485 . ? . description=trf scaffold_19 . repeat_region 443455 443474 . ? . description=trf scaffold_19 . repeat_region 443692 443822 . ? . description=trf scaffold_19 . repeat_region 443749 443858 . ? . description=trf scaffold_19 . repeat_region 443767 443829 . ? . description=trf scaffold_19 . biological_region 443900 443903 0.999 - . logic_name=eponine scaffold_19 . biological_region 447660 447662 0.999 + . logic_name=eponine scaffold_19 . biological_region 449974 449978 0.999 + . logic_name=eponine scaffold_19 . biological_region 450973 450974 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 444120 446691 . + . ID=Phyra76674;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000106;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 444120 446691 . + . ID=Phyra76674;Parent=Phyra76674;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 444120 444229 . + 0 ID=Phyra76674;Parent=Phyra76674;rank=1 scaffold_19 . exon 444120 444229 . + . ID=Phyra76674.1;Parent=Phyra76674;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 444328 444655 . + 0 ID=Phyra76674;Parent=Phyra76674;rank=2 scaffold_19 . exon 444328 444655 . + . ID=Phyra76674.2;Parent=Phyra76674;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 444752 445651 . + 0 ID=Phyra76674;Parent=Phyra76674;rank=3 scaffold_19 . exon 444752 445651 . + . ID=Phyra76674.3;Parent=Phyra76674;constitutive=1;rank=3 scaffold_19 . CDS 445732 446691 . + 0 ID=Phyra76674;Parent=Phyra76674;rank=4 scaffold_19 . exon 445732 446691 . + . ID=Phyra76674.4;Parent=Phyra76674;constitutive=1;rank=4 scaffold_19 ensembl protein_coding_gene 447039 447500 . - . ID=Phyra76675;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000107;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 447039 447500 . - . ID=Phyra76675;Parent=Phyra76675;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 447039 447500 . - 0 ID=Phyra76675;Parent=Phyra76675;rank=1 scaffold_19 . exon 447039 447500 . - . ID=Phyra76675.1;Parent=Phyra76675;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 447745 449253 . + . ID=Phyra76676;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000108;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 447745 449253 . + . ID=Phyra76676;Parent=Phyra76676;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 447745 449253 . + 0 ID=Phyra76676;Parent=Phyra76676;rank=1 scaffold_19 . exon 447745 449253 . + . ID=Phyra76676.1;Parent=Phyra76676;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 449928 455816 . + . ID=Phyra76677;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000109;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 449928 455816 . + . ID=Phyra76677;Parent=Phyra76677;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 449928 455816 . + 0 ID=Phyra76677;Parent=Phyra76677;rank=1 scaffold_19 . exon 449928 455816 . + . ID=Phyra76677.1;Parent=Phyra76677;constitutive=1;rank=1 scaffold_19 . repeat_region 462316 462324 . ? . description=dust scaffold_19 ensembl protein_coding_gene 457666 458388 . - . ID=Phyra76678;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000110;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 457666 458388 . - . ID=Phyra76678;Parent=Phyra76678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 457666 458388 . - 0 ID=Phyra76678;Parent=Phyra76678;rank=1 scaffold_19 . exon 457666 458388 . - . ID=Phyra76678.1;Parent=Phyra76678;constitutive=1;rank=1 scaffold_19 . biological_region 463285 463286 0.999 + . logic_name=eponine scaffold_19 . biological_region 463323 463324 0.999 - . logic_name=eponine scaffold_19 . biological_region 463330 463334 0.999 + . logic_name=eponine scaffold_19 . biological_region 463532 463535 0.999 - . logic_name=eponine scaffold_19 . biological_region 463605 463609 0.999 - . logic_name=eponine scaffold_19 . biological_region 463701 463702 0.999 - . logic_name=eponine scaffold_19 . biological_region 464713 464715 0.999 + . logic_name=eponine scaffold_19 . biological_region 464850 464854 0.999 - . logic_name=eponine scaffold_19 . biological_region 465266 465267 0.999 + . logic_name=eponine scaffold_19 . biological_region 465651 465656 0.999 - . logic_name=eponine scaffold_19 . biological_region 466747 466748 0.999 + . logic_name=eponine scaffold_19 . biological_region 466818 466820 0.999 - . logic_name=eponine scaffold_19 . biological_region 467702 467703 0.999 + . logic_name=eponine scaffold_19 . repeat_region 470074 470114 . ? . description=trf scaffold_19 . biological_region 471084 471086 0.999 + . logic_name=eponine scaffold_19 . biological_region 471144 471148 0.999 + . logic_name=eponine scaffold_19 . biological_region 471279 471283 0.999 + . logic_name=eponine scaffold_19 . biological_region 471317 471318 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 462899 463534 . - . ID=Phyra76679;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000111;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 462899 463534 . - . ID=Phyra76679;Parent=Phyra76679;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 462899 463534 . - 0 ID=Phyra76679;Parent=Phyra76679;rank=1 scaffold_19 . exon 462899 463534 . - . ID=Phyra76679.1;Parent=Phyra76679;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 465120 465770 . - . ID=Phyra76680;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000112;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 465120 465770 . - . ID=Phyra76680;Parent=Phyra76680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 465120 465770 . - 0 ID=Phyra76680;Parent=Phyra76680;rank=1 scaffold_19 . exon 465120 465770 . - . ID=Phyra76680.1;Parent=Phyra76680;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 467148 468368 . + . ID=Phyra76681;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000113;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 467148 468368 . + . ID=Phyra76681;Parent=Phyra76681;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 467148 468368 . + 0 ID=Phyra76681;Parent=Phyra76681;rank=1 scaffold_19 . exon 467148 468368 . + . ID=Phyra76681.1;Parent=Phyra76681;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 469442 470710 . - . ID=Phyra76682;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000114;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 469442 470710 . - . ID=Phyra76682;Parent=Phyra76682;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 469442 469467 . - 0 ID=Phyra76682;Parent=Phyra76682;rank=6 scaffold_19 . exon 469442 469467 . - . ID=Phyra76682.6;Parent=Phyra76682;constitutive=1;ensembl_phase=1;rank=6 scaffold_19 . CDS 469488 469602 . - 0 ID=Phyra76682;Parent=Phyra76682;rank=5 scaffold_19 . exon 469488 469602 . - . ID=Phyra76682.5;Parent=Phyra76682;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_19 . CDS 469678 469762 . - 0 ID=Phyra76682;Parent=Phyra76682;rank=4 scaffold_19 . exon 469678 469762 . - . ID=Phyra76682.4;Parent=Phyra76682;constitutive=1;ensembl_phase=2;rank=4 scaffold_19 . CDS 469843 469937 . - 0 ID=Phyra76682;Parent=Phyra76682;rank=3 scaffold_19 . exon 469843 469937 . - . ID=Phyra76682.3;Parent=Phyra76682;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_19 . CDS 470007 470325 . - 0 ID=Phyra76682;Parent=Phyra76682;rank=2 scaffold_19 . exon 470007 470325 . - . ID=Phyra76682.2;Parent=Phyra76682;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 470388 470710 . - 0 ID=Phyra76682;Parent=Phyra76682;rank=1 scaffold_19 . exon 470388 470710 . - . ID=Phyra76682.1;Parent=Phyra76682;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 ensembl protein_coding_gene 470980 471768 . + . ID=Phyra76683;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000115;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 470980 471768 . + . ID=Phyra76683;Parent=Phyra76683;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 470980 471768 . + 0 ID=Phyra76683;Parent=Phyra76683;rank=1 scaffold_19 . exon 470980 471768 . + . ID=Phyra76683.1;Parent=Phyra76683;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 471855 479395 . - . ID=Phyra94588;biotype=protein_coding;external_name=C_scaffold_19000039;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 471855 479395 . - . ID=Phyra94588;Parent=Phyra94588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 471855 472052 . - 0 ID=Phyra94588;Parent=Phyra94588;rank=12 scaffold_19 . exon 471855 472052 . - . ID=Phyra94588.12;Parent=Phyra94588;constitutive=1;rank=12 scaffold_19 . CDS 472109 472145 . - 0 ID=Phyra94588;Parent=Phyra94588;rank=11 scaffold_19 . exon 472109 472145 . - . ID=Phyra94588.11;Parent=Phyra94588;constitutive=1;ensembl_phase=2;rank=11 scaffold_19 . CDS 472201 473266 . - 0 ID=Phyra94588;Parent=Phyra94588;rank=10 scaffold_19 . exon 472201 473266 . - . ID=Phyra94588.10;Parent=Phyra94588;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_19 . CDS 473360 475835 . - 0 ID=Phyra94588;Parent=Phyra94588;rank=9 scaffold_19 . CDS 476079 476299 . - 0 ID=Phyra94588;Parent=Phyra94588;rank=8 scaffold_19 . CDS 476374 476892 . - 0 ID=Phyra94588;Parent=Phyra94588;rank=7 scaffold_19 . CDS 476995 477660 . - 0 ID=Phyra94588;Parent=Phyra94588;rank=6 scaffold_19 . CDS 477985 478093 . - 0 ID=Phyra94588;Parent=Phyra94588;rank=5 scaffold_19 . CDS 478148 478309 . - 0 ID=Phyra94588;Parent=Phyra94588;rank=4 scaffold_19 . CDS 478340 478500 . - 0 ID=Phyra94588;Parent=Phyra94588;rank=3 scaffold_19 . CDS 478543 478779 . - 0 ID=Phyra94588;Parent=Phyra94588;rank=2 scaffold_19 . CDS 479065 479395 . - 0 ID=Phyra94588;Parent=Phyra94588;rank=1 scaffold_19 . exon 473360 475835 . - . ID=Phyra94588.9;Parent=Phyra94588;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_19 . exon 476079 476299 . - . ID=Phyra94588.8;Parent=Phyra94588;constitutive=1;ensembl_phase=1;rank=8 scaffold_19 . exon 476374 476892 . - . ID=Phyra94588.7;Parent=Phyra94588;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_19 . exon 476995 477660 . - . ID=Phyra94588.6;Parent=Phyra94588;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_19 . exon 477985 478093 . - . ID=Phyra94588.5;Parent=Phyra94588;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_19 . exon 478148 478309 . - . ID=Phyra94588.4;Parent=Phyra94588;constitutive=1;rank=4 scaffold_19 . exon 478340 478500 . - . ID=Phyra94588.3;Parent=Phyra94588;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . exon 478543 478779 . - . ID=Phyra94588.2;Parent=Phyra94588;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_19 . exon 479065 479395 . - . ID=Phyra94588.1;Parent=Phyra94588;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . biological_region 486460 486461 0.999 + . logic_name=eponine scaffold_19 . biological_region 487236 487238 0.999 + . logic_name=eponine scaffold_19 . biological_region 487920 487925 0.999 + . logic_name=eponine scaffold_19 . biological_region 489043 489048 0.999 - . logic_name=eponine scaffold_19 . biological_region 489180 489180 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 482547 486903 . - . ID=Phyra76685;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000117;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 482547 486903 . - . ID=Phyra76685;Parent=Phyra76685;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 482547 482551 . - 0 ID=Phyra76685;Parent=Phyra76685;rank=7 scaffold_19 . exon 482547 482551 . - . ID=Phyra76685.7;Parent=Phyra76685;constitutive=1;ensembl_phase=1;rank=7 scaffold_19 . CDS 482656 484464 . - 0 ID=Phyra76685;Parent=Phyra76685;rank=6 scaffold_19 . exon 482656 484464 . - . ID=Phyra76685.6;Parent=Phyra76685;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_19 . CDS 484597 484689 . - 0 ID=Phyra76685;Parent=Phyra76685;rank=5 scaffold_19 . exon 484597 484689 . - . ID=Phyra76685.5;Parent=Phyra76685;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_19 . CDS 484921 485667 . - 0 ID=Phyra76685;Parent=Phyra76685;rank=4 scaffold_19 . exon 484921 485667 . - . ID=Phyra76685.4;Parent=Phyra76685;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_19 . CDS 485987 486049 . - 0 ID=Phyra76685;Parent=Phyra76685;rank=3 scaffold_19 . exon 485987 486049 . - . ID=Phyra76685.3;Parent=Phyra76685;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 486128 486197 . - 0 ID=Phyra76685;Parent=Phyra76685;rank=2 scaffold_19 . exon 486128 486197 . - . ID=Phyra76685.2;Parent=Phyra76685;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 486271 486903 . - 0 ID=Phyra76685;Parent=Phyra76685;rank=1 scaffold_19 . exon 486271 486903 . - . ID=Phyra76685.1;Parent=Phyra76685;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 487861 489309 . + . ID=Phyra76686;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000118;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 487861 489309 . + . ID=Phyra76686;Parent=Phyra76686;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 487861 489309 . + 0 ID=Phyra76686;Parent=Phyra76686;rank=1 scaffold_19 . exon 487861 489309 . + . ID=Phyra76686.1;Parent=Phyra76686;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 489677 490933 . + . ID=Phyra76687;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000119;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 489677 490933 . + . ID=Phyra76687;Parent=Phyra76687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 489677 490933 . + 0 ID=Phyra76687;Parent=Phyra76687;rank=1 scaffold_19 . exon 489677 490933 . + . ID=Phyra76687.1;Parent=Phyra76687;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 491769 492092 . + . ID=Phyra76688;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000120;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 491769 492092 . + . ID=Phyra76688;Parent=Phyra76688;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 491769 492092 . + 0 ID=Phyra76688;Parent=Phyra76688;rank=1 scaffold_19 . exon 491769 492092 . + . ID=Phyra76688.1;Parent=Phyra76688;constitutive=1;rank=1 scaffold_19 . repeat_region 492807 492816 . ? . description=dust scaffold_19 . repeat_region 493399 493408 . ? . description=dust scaffold_19 . repeat_region 494012 494026 . ? . description=dust scaffold_19 . repeat_region 494046 494065 . ? . description=trf scaffold_19 . repeat_region 498920 498927 . ? . description=dust scaffold_19 ensembl protein_coding_gene 494672 496096 . + . ID=Phyra76689;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000121;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 494672 496096 . + . ID=Phyra76689;Parent=Phyra76689;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 494672 496096 . + 0 ID=Phyra76689;Parent=Phyra76689;rank=1 scaffold_19 . exon 494672 496096 . + . ID=Phyra76689.1;Parent=Phyra76689;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 496702 498129 . - . ID=Phyra76690;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000122;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 496702 498129 . - . ID=Phyra76690;Parent=Phyra76690;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 496702 498129 . - 0 ID=Phyra76690;Parent=Phyra76690;rank=1 scaffold_19 . exon 496702 498129 . - . ID=Phyra76690.1;Parent=Phyra76690;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 499286 500707 . - . ID=Phyra76691;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000123;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 499286 500707 . - . ID=Phyra76691;Parent=Phyra76691;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 499286 500707 . - 0 ID=Phyra76691;Parent=Phyra76691;rank=1 scaffold_19 . exon 499286 500707 . - . ID=Phyra76691.1;Parent=Phyra76691;constitutive=1;rank=1 scaffold_19 . biological_region 507556 507559 0.999 - . logic_name=eponine scaffold_19 . biological_region 508011 508014 0.999 - . logic_name=eponine scaffold_19 . biological_region 508740 508741 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 503510 507358 . - . ID=Phyra43533;biotype=protein_coding;external_name=gwEuk.19.74.1;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 503510 507358 . - . ID=Phyra43533;Parent=Phyra43533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 503510 506551 . - 0 ID=Phyra43533;Parent=Phyra43533;rank=2 scaffold_19 . exon 503510 506551 . - . ID=Phyra43533.2;Parent=Phyra43533;constitutive=1;rank=2 scaffold_19 . CDS 506858 507358 . - 0 ID=Phyra43533;Parent=Phyra43533;rank=1 scaffold_19 . exon 506858 507358 . - . ID=Phyra43533.1;Parent=Phyra43533;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 507927 509762 . + . ID=Phyra43538;biotype=protein_coding;external_name=gwEuk.19.79.1;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 507927 509762 . + . ID=Phyra43538;Parent=Phyra43538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 507927 508700 . + 0 ID=Phyra43538;Parent=Phyra43538;rank=1 scaffold_19 . exon 507927 508700 . + . ID=Phyra43538.1;Parent=Phyra43538;constitutive=1;rank=1 scaffold_19 . CDS 508743 509366 . + 0 ID=Phyra43538;Parent=Phyra43538;rank=2 scaffold_19 . exon 508743 509366 . + . ID=Phyra43538.2;Parent=Phyra43538;constitutive=1;rank=2 scaffold_19 . CDS 509424 509762 . + 0 ID=Phyra43538;Parent=Phyra43538;rank=3 scaffold_19 . exon 509424 509762 . + . ID=Phyra43538.3;Parent=Phyra43538;constitutive=1;rank=3 scaffold_19 ensembl protein_coding_gene 510300 511481 . - . ID=Phyra71441;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_19000010;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 510300 511481 . - . ID=Phyra71441;Parent=Phyra71441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 510300 511481 . - 0 ID=Phyra71441;Parent=Phyra71441;rank=1 scaffold_19 . exon 510300 511481 . - . ID=Phyra71441.1;Parent=Phyra71441;constitutive=1;rank=1 scaffold_19 . repeat_region 512282 512364 . ? . description=dust scaffold_19 . repeat_region 512284 512339 . ? . description=trf scaffold_19 . repeat_region 512284 512349 . ? . description=trf scaffold_19 . repeat_region 512284 512357 . ? . description=trf scaffold_19 . repeat_region 517828 517922 . ? . description=trf scaffold_19 ensembl protein_coding_gene 518083 520905 . - . ID=Phyra71442;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_19000011;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 518083 520905 . - . ID=Phyra71442;Parent=Phyra71442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 518083 520620 . - 0 ID=Phyra71442;Parent=Phyra71442;rank=3 scaffold_19 . exon 518083 520620 . - . ID=Phyra71442.3;Parent=Phyra71442;constitutive=1;rank=3 scaffold_19 . CDS 520654 520705 . - 0 ID=Phyra71442;Parent=Phyra71442;rank=2 scaffold_19 . exon 520654 520705 . - . ID=Phyra71442.2;Parent=Phyra71442;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 520865 520905 . - 0 ID=Phyra71442;Parent=Phyra71442;rank=1 scaffold_19 . exon 520865 520905 . - . ID=Phyra71442.1;Parent=Phyra71442;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 ensembl protein_coding_gene 511682 513824 . + . ID=Phyra76695;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000127;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 511682 513824 . + . ID=Phyra76695;Parent=Phyra76695;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 511682 511881 . + 0 ID=Phyra76695;Parent=Phyra76695;rank=1 scaffold_19 . exon 511682 511881 . + . ID=Phyra76695.1;Parent=Phyra76695;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 511958 513233 . + 0 ID=Phyra76695;Parent=Phyra76695;rank=2 scaffold_19 . exon 511958 513233 . + . ID=Phyra76695.2;Parent=Phyra76695;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 513425 513435 . + 0 ID=Phyra76695;Parent=Phyra76695;rank=3 scaffold_19 . exon 513425 513435 . + . ID=Phyra76695.3;Parent=Phyra76695;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_19 . CDS 513459 513529 . + 0 ID=Phyra76695;Parent=Phyra76695;rank=4 scaffold_19 . exon 513459 513529 . + . ID=Phyra76695.4;Parent=Phyra76695;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_19 . CDS 513631 513824 . + 0 ID=Phyra76695;Parent=Phyra76695;rank=5 scaffold_19 . exon 513631 513824 . + . ID=Phyra76695.5;Parent=Phyra76695;constitutive=1;ensembl_phase=1;rank=5 scaffold_19 ensembl protein_coding_gene 514486 517650 . - . ID=Phyra76696;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000128;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 514486 517650 . - . ID=Phyra76696;Parent=Phyra76696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 514486 517650 . - 0 ID=Phyra76696;Parent=Phyra76696;rank=1 scaffold_19 . exon 514486 517650 . - . ID=Phyra76696.1;Parent=Phyra76696;constitutive=1;rank=1 scaffold_19 . biological_region 522155 522158 0.999 - . logic_name=eponine scaffold_19 . biological_region 530927 530930 0.999 - . logic_name=eponine scaffold_19 . biological_region 530991 530992 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 521475 522998 . + . ID=Phyra76698;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000130;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 521475 522998 . + . ID=Phyra76698;Parent=Phyra76698;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 521475 522998 . + 0 ID=Phyra76698;Parent=Phyra76698;rank=1 scaffold_19 . exon 521475 522998 . + . ID=Phyra76698.1;Parent=Phyra76698;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 527628 528341 . - . ID=Phyra76699;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000131;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 527628 528341 . - . ID=Phyra76699;Parent=Phyra76699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 527628 527633 . - 0 ID=Phyra76699;Parent=Phyra76699;rank=3 scaffold_19 . exon 527628 527633 . - . ID=Phyra76699.3;Parent=Phyra76699;constitutive=1;rank=3 scaffold_19 . CDS 527705 527743 . - 0 ID=Phyra76699;Parent=Phyra76699;rank=2 scaffold_19 . exon 527705 527743 . - . ID=Phyra76699.2;Parent=Phyra76699;constitutive=1;rank=2 scaffold_19 . CDS 527961 528341 . - 0 ID=Phyra76699;Parent=Phyra76699;rank=1 scaffold_19 . exon 527961 528341 . - . ID=Phyra76699.1;Parent=Phyra76699;constitutive=1;rank=1 scaffold_19 . repeat_region 533673 533731 . ? . description=dust scaffold_19 ensembl protein_coding_gene 533786 535412 . - . ID=Phyra76700;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000132;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 533786 535412 . - . ID=Phyra76700;Parent=Phyra76700;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 533786 534710 . - 0 ID=Phyra76700;Parent=Phyra76700;rank=2 scaffold_19 . exon 533786 534710 . - . ID=Phyra76700.2;Parent=Phyra76700;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 534931 535412 . - 0 ID=Phyra76700;Parent=Phyra76700;rank=1 scaffold_19 . exon 534931 535412 . - . ID=Phyra76700.1;Parent=Phyra76700;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . biological_region 547140 547142 0.999 - . logic_name=eponine scaffold_19 . biological_region 550618 550619 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 543306 544634 . - . ID=Phyra43555;biotype=protein_coding;external_name=gwEuk.19.96.1;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 543306 544634 . - . ID=Phyra43555;Parent=Phyra43555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 543306 543762 . - 0 ID=Phyra43555;Parent=Phyra43555;rank=2 scaffold_19 . exon 543306 543762 . - . ID=Phyra43555.2;Parent=Phyra43555;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 543805 544634 . - 0 ID=Phyra43555;Parent=Phyra43555;rank=1 scaffold_19 . exon 543805 544634 . - . ID=Phyra43555.1;Parent=Phyra43555;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 ensembl protein_coding_gene 546451 547956 . + . ID=Phyra76702;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000134;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 546451 547956 . + . ID=Phyra76702;Parent=Phyra76702;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 546451 547956 . + 0 ID=Phyra76702;Parent=Phyra76702;rank=1 scaffold_19 . exon 546451 547956 . + . ID=Phyra76702.1;Parent=Phyra76702;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 549233 551025 . - . ID=Phyra76703;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000135;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 549233 551025 . - . ID=Phyra76703;Parent=Phyra76703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 549233 550848 . - 0 ID=Phyra76703;Parent=Phyra76703;rank=2 scaffold_19 . exon 549233 550848 . - . ID=Phyra76703.2;Parent=Phyra76703;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 550989 551025 . - 0 ID=Phyra76703;Parent=Phyra76703;rank=1 scaffold_19 . repeat_region 551430 551442 . ? . description=dust scaffold_19 . repeat_region 554011 554040 . ? . description=trf scaffold_19 . repeat_region 554367 554416 . ? . description=dust scaffold_19 . repeat_region 558378 558427 . ? . description=dust scaffold_19 . repeat_region 559218 559226 . ? . description=dust scaffold_19 . repeat_region 559389 559438 . ? . description=dust scaffold_19 ensembl protein_coding_gene 552480 553730 . + . ID=Phyra43556;biotype=protein_coding;external_name=gwEuk.19.97.1;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 552480 553730 . + . ID=Phyra43556;Parent=Phyra43556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 552480 553730 . + 0 ID=Phyra43556;Parent=Phyra43556;rank=1 scaffold_19 . exon 552480 553730 . + . ID=Phyra43556.1;Parent=Phyra43556;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 558952 559360 . + . ID=Phyra43558;biotype=protein_coding;external_name=gwEuk.19.99.1;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 558952 559360 . + . ID=Phyra43558;Parent=Phyra43558;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 558952 559032 . + 0 ID=Phyra43558;Parent=Phyra43558;rank=1 scaffold_19 . exon 558952 559032 . + . ID=Phyra43558.1;Parent=Phyra43558;constitutive=1;rank=1 scaffold_19 . CDS 559097 559160 . + 0 ID=Phyra43558;Parent=Phyra43558;rank=2 scaffold_19 . exon 559097 559160 . + . ID=Phyra43558.2;Parent=Phyra43558;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 559233 559360 . + 0 ID=Phyra43558;Parent=Phyra43558;rank=3 scaffold_19 . exon 559233 559360 . + . ID=Phyra43558.3;Parent=Phyra43558;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . exon 550989 551025 . - . ID=Phyra76703.1;Parent=Phyra76703;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 ensembl protein_coding_gene 555685 557151 . - . ID=Phyra76706;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000138;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 555685 557151 . - . ID=Phyra76706;Parent=Phyra76706;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 555685 557151 . - 0 ID=Phyra76706;Parent=Phyra76706;rank=1 scaffold_19 . exon 555685 557151 . - . ID=Phyra76706.1;Parent=Phyra76706;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 560776 562242 . + . ID=Phyra76708;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000140;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 560776 562242 . + . ID=Phyra76708;Parent=Phyra76708;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 560776 562242 . + 0 ID=Phyra76708;Parent=Phyra76708;rank=1 scaffold_19 . exon 560776 562242 . + . ID=Phyra76708.1;Parent=Phyra76708;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 554070 555375 . + . ID=Phyra94591;biotype=protein_coding;external_name=C_scaffold_19000042;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 554070 555375 . + . ID=Phyra94591;Parent=Phyra94591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 554070 554222 . + 0 ID=Phyra94591;Parent=Phyra94591;rank=1 scaffold_19 . exon 554070 554222 . + . ID=Phyra94591.1;Parent=Phyra94591;constitutive=1;rank=1 scaffold_19 . CDS 554288 554351 . + 0 ID=Phyra94591;Parent=Phyra94591;rank=2 scaffold_19 . exon 554288 554351 . + . ID=Phyra94591.2;Parent=Phyra94591;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 554423 554667 . + 0 ID=Phyra94591;Parent=Phyra94591;rank=3 scaffold_19 . exon 554423 554667 . + . ID=Phyra94591.3;Parent=Phyra94591;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 554734 555375 . + 0 ID=Phyra94591;Parent=Phyra94591;rank=4 scaffold_19 . exon 554734 555375 . + . ID=Phyra94591.4;Parent=Phyra94591;constitutive=1;rank=4 scaffold_19 . biological_region 561198 561202 0.999 + . logic_name=eponine scaffold_19 . biological_region 561310 561315 0.999 - . logic_name=eponine scaffold_19 . biological_region 561720 561724 0.999 + . logic_name=eponine scaffold_19 . biological_region 563754 563755 0.999 + . logic_name=eponine scaffold_19 . biological_region 564422 564425 0.999 + . logic_name=eponine scaffold_19 . biological_region 566399 566400 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 562883 564293 . - . ID=Phyra76709;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000141;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 562883 564293 . - . ID=Phyra76709;Parent=Phyra76709;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 562883 562900 . - 0 ID=Phyra76709;Parent=Phyra76709;rank=2 scaffold_19 . exon 562883 562900 . - . ID=Phyra76709.2;Parent=Phyra76709;constitutive=1;rank=2 scaffold_19 . CDS 563310 564293 . - 0 ID=Phyra76709;Parent=Phyra76709;rank=1 scaffold_19 . exon 563310 564293 . - . ID=Phyra76709.1;Parent=Phyra76709;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 565879 566673 . - . ID=Phyra76710;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000142;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 565879 566673 . - . ID=Phyra76710;Parent=Phyra76710;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 565879 566673 . - 0 ID=Phyra76710;Parent=Phyra76710;rank=1 scaffold_19 . exon 565879 566673 . - . ID=Phyra76710.1;Parent=Phyra76710;constitutive=1;rank=1 scaffold_19 . repeat_region 566803 583560 . ? . description=dust scaffold_19 . biological_region 584210 584212 0.999 + . logic_name=eponine scaffold_19 . biological_region 584260 584265 0.999 + . logic_name=eponine scaffold_19 . biological_region 584326 584327 0.999 - . logic_name=eponine scaffold_19 . biological_region 584362 584367 0.999 + . logic_name=eponine scaffold_19 . biological_region 584418 584419 0.999 + . logic_name=eponine scaffold_19 . biological_region 588916 588920 0.999 + . logic_name=eponine scaffold_19 . biological_region 589100 589105 0.999 + . logic_name=eponine scaffold_19 . repeat_region 589641 589660 . ? . description=trf scaffold_19 ensembl protein_coding_gene 584706 587509 . + . ID=Phyra76711;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_19000143;logic_name=jgi_phyra1 scaffold_19 ensembl transcript 584706 587509 . + . ID=Phyra76711;Parent=Phyra76711;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_19 . CDS 584706 585599 . + 0 ID=Phyra76711;Parent=Phyra76711;rank=1 scaffold_19 . exon 584706 585599 . + . ID=Phyra76711.1;Parent=Phyra76711;constitutive=1;rank=1 scaffold_19 . CDS 585642 585851 . + 0 ID=Phyra76711;Parent=Phyra76711;rank=2 scaffold_19 . exon 585642 585851 . + . ID=Phyra76711.2;Parent=Phyra76711;constitutive=1;rank=2 scaffold_19 . CDS 586155 586604 . + 0 ID=Phyra76711;Parent=Phyra76711;rank=3 scaffold_19 . exon 586155 586604 . + . ID=Phyra76711.3;Parent=Phyra76711;constitutive=1;rank=3 scaffold_19 . CDS 586960 587109 . + 0 ID=Phyra76711;Parent=Phyra76711;rank=4 scaffold_19 . exon 586960 587109 . + . ID=Phyra76711.4;Parent=Phyra76711;constitutive=1;rank=4 scaffold_19 . CDS 587371 587462 . + 0 ID=Phyra76711;Parent=Phyra76711;rank=5 scaffold_19 . exon 587371 587462 . + . ID=Phyra76711.5;Parent=Phyra76711;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_19 . CDS 587503 587509 . + 0 ID=Phyra76711;Parent=Phyra76711;rank=6 scaffold_19 . exon 587503 587509 . + . ID=Phyra76711.6;Parent=Phyra76711;constitutive=1;ensembl_phase=2;rank=6 ##gff-version 3 ##sequence-region scaffold_18 1 596890 scaffold_18 . biological_region 1423 1427 0.999 - . logic_name=eponine scaffold_18 . biological_region 2567 2572 0.999 - . logic_name=eponine scaffold_18 . repeat_region 3920 3959 . ? . description=dust scaffold_18 . repeat_region 3993 4067 . ? . description=trf scaffold_18 . repeat_region 3993 4067 . ? . description=trf scaffold_18 . repeat_region 3993 4088 . ? . description=dust scaffold_18 . repeat_region 4029 4081 . ? . description=trf scaffold_18 . biological_region 6182 6188 0.999 - . logic_name=eponine scaffold_18 . biological_region 6305 6307 0.999 - . logic_name=eponine scaffold_18 . biological_region 6477 6481 0.999 + . logic_name=eponine scaffold_18 . biological_region 6527 6532 0.999 + . logic_name=eponine scaffold_18 . biological_region 6542 6543 0.999 - . logic_name=eponine scaffold_18 . biological_region 6549 6554 0.999 + . logic_name=eponine scaffold_18 . biological_region 6587 6600 0.999 - . logic_name=eponine scaffold_18 . biological_region 6638 6640 0.999 - . logic_name=eponine scaffold_18 . biological_region 6649 6650 0.999 + . logic_name=eponine scaffold_18 . biological_region 6678 6682 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 1231 2682 . + . ID=Phyra43125;biotype=protein_coding;external_name=gwEuk.18.88.1;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 1231 2682 . + . ID=Phyra43125;Parent=Phyra43125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 1231 2682 . + 0 ID=Phyra43125;Parent=Phyra43125;rank=1 scaffold_18 . exon 1231 2682 . + . ID=Phyra43125.1;Parent=Phyra43125;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 3453 4781 . + . ID=Phyra76371;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000002;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 3453 4781 . + . ID=Phyra76371;Parent=Phyra76371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 3453 4781 . + 0 ID=Phyra76371;Parent=Phyra76371;rank=1 scaffold_18 . exon 3453 4781 . + . ID=Phyra76371.1;Parent=Phyra76371;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 5309 6274 . - . ID=Phyra76372;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000003;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 5309 6274 . - . ID=Phyra76372;Parent=Phyra76372;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 5309 6274 . - 0 ID=Phyra76372;Parent=Phyra76372;rank=1 scaffold_18 . exon 5309 6274 . - . ID=Phyra76372.1;Parent=Phyra76372;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 6580 8583 . + . ID=Phyra76373;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000004;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 6580 8583 . + . ID=Phyra76373;Parent=Phyra76373;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 6580 8583 . + 0 ID=Phyra76373;Parent=Phyra76373;rank=1 scaffold_18 . exon 6580 8583 . + . ID=Phyra76373.1;Parent=Phyra76373;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 9575 10618 . - . ID=Phyra76374;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000005;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 9575 10618 . - . ID=Phyra76374;Parent=Phyra76374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 9575 9579 . - 0 ID=Phyra76374;Parent=Phyra76374;rank=7 scaffold_18 . exon 9575 9579 . - . ID=Phyra76374.7;Parent=Phyra76374;constitutive=1;ensembl_phase=1;rank=7 scaffold_18 . CDS 9664 9844 . - 0 ID=Phyra76374;Parent=Phyra76374;rank=6 scaffold_18 . exon 9664 9844 . - . ID=Phyra76374.6;Parent=Phyra76374;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_18 . CDS 9939 10061 . - 0 ID=Phyra76374;Parent=Phyra76374;rank=5 scaffold_18 . exon 9939 10061 . - . ID=Phyra76374.5;Parent=Phyra76374;constitutive=1;rank=5 scaffold_18 . CDS 10130 10209 . - 0 ID=Phyra76374;Parent=Phyra76374;rank=4 scaffold_18 . CDS 10286 10364 . - 0 ID=Phyra76374;Parent=Phyra76374;rank=3 scaffold_18 . CDS 10426 10506 . - 0 ID=Phyra76374;Parent=Phyra76374;rank=2 scaffold_18 . CDS 10562 10618 . - 0 ID=Phyra76374;Parent=Phyra76374;rank=1 scaffold_18 ensembl protein_coding_gene 19768 20389 . - . ID=Phyra71411;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000002;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 19768 20389 . - . ID=Phyra71411;Parent=Phyra71411;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 19768 20159 . - 0 ID=Phyra71411;Parent=Phyra71411;rank=2 scaffold_18 . exon 19768 20159 . - . ID=Phyra71411.2;Parent=Phyra71411;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 20245 20389 . - 0 ID=Phyra71411;Parent=Phyra71411;rank=1 scaffold_18 . exon 10130 10209 . - . ID=Phyra76374.4;Parent=Phyra76374;constitutive=1;ensembl_phase=1;rank=4 scaffold_18 . exon 10286 10364 . - . ID=Phyra76374.3;Parent=Phyra76374;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_18 . exon 10426 10506 . - . ID=Phyra76374.2;Parent=Phyra76374;constitutive=1;rank=2 scaffold_18 . exon 10562 10618 . - . ID=Phyra76374.1;Parent=Phyra76374;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 10744 14126 . + . ID=Phyra76375;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000006;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 10744 14126 . + . ID=Phyra76375;Parent=Phyra76375;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 10744 10912 . + 0 ID=Phyra76375;Parent=Phyra76375;rank=1 scaffold_18 . exon 10744 10912 . + . ID=Phyra76375.1;Parent=Phyra76375;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 10997 11241 . + 0 ID=Phyra76375;Parent=Phyra76375;rank=2 scaffold_18 . exon 10997 11241 . + . ID=Phyra76375.2;Parent=Phyra76375;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 11321 11492 . + 0 ID=Phyra76375;Parent=Phyra76375;rank=3 scaffold_18 . exon 11321 11492 . + . ID=Phyra76375.3;Parent=Phyra76375;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_18 . CDS 11568 11702 . + 0 ID=Phyra76375;Parent=Phyra76375;rank=4 scaffold_18 . exon 11568 11702 . + . ID=Phyra76375.4;Parent=Phyra76375;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 11784 11976 . + 0 ID=Phyra76375;Parent=Phyra76375;rank=5 scaffold_18 . exon 11784 11976 . + . ID=Phyra76375.5;Parent=Phyra76375;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_18 . CDS 12042 12996 . + 0 ID=Phyra76375;Parent=Phyra76375;rank=6 scaffold_18 . exon 12042 12996 . + . ID=Phyra76375.6;Parent=Phyra76375;constitutive=1;ensembl_phase=2;rank=6 scaffold_18 . CDS 13402 14042 . + 0 ID=Phyra76375;Parent=Phyra76375;rank=7 scaffold_18 . exon 13402 14042 . + . ID=Phyra76375.7;Parent=Phyra76375;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_18 . CDS 14105 14126 . + 0 ID=Phyra76375;Parent=Phyra76375;rank=8 scaffold_18 . exon 14105 14126 . + . ID=Phyra76375.8;Parent=Phyra76375;constitutive=1;ensembl_phase=2;rank=8 scaffold_18 ensembl protein_coding_gene 16471 18921 . + . ID=Phyra94460;biotype=protein_coding;external_name=C_scaffold_18000002;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 16471 18921 . + . ID=Phyra94460;Parent=Phyra94460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 16471 16723 . + 0 ID=Phyra94460;Parent=Phyra94460;rank=1 scaffold_18 . exon 16471 16723 . + . ID=Phyra94460.1;Parent=Phyra94460;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 16838 17170 . + 0 ID=Phyra94460;Parent=Phyra94460;rank=2 scaffold_18 . exon 16838 17170 . + . ID=Phyra94460.2;Parent=Phyra94460;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 17249 18010 . + 0 ID=Phyra94460;Parent=Phyra94460;rank=3 scaffold_18 . exon 17249 18010 . + . ID=Phyra94460.3;Parent=Phyra94460;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 18083 18392 . + 0 ID=Phyra94460;Parent=Phyra94460;rank=4 scaffold_18 . exon 18083 18392 . + . ID=Phyra94460.4;Parent=Phyra94460;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_18 . CDS 18450 18921 . + 0 ID=Phyra94460;Parent=Phyra94460;rank=5 scaffold_18 . exon 18450 18921 . + . ID=Phyra94460.5;Parent=Phyra94460;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 . repeat_region 28553 28561 . ? . description=dust scaffold_18 ensembl protein_coding_gene 24975 25499 . + . ID=Phyra43183;biotype=protein_coding;external_name=gwEuk.18.146.1;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 24975 25499 . + . ID=Phyra43183;Parent=Phyra43183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 24975 25499 . + 0 ID=Phyra43183;Parent=Phyra43183;rank=1 scaffold_18 . exon 24975 25499 . + . ID=Phyra43183.1;Parent=Phyra43183;constitutive=1;rank=1 scaffold_18 . exon 20245 20389 . - . ID=Phyra71411.1;Parent=Phyra71411;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 20604 21476 . - . ID=Phyra76378;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000009;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 20604 21476 . - . ID=Phyra76378;Parent=Phyra76378;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 20604 21476 . - 0 ID=Phyra76378;Parent=Phyra76378;rank=1 scaffold_18 . exon 20604 21476 . - . ID=Phyra76378.1;Parent=Phyra76378;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 28709 30766 . + . ID=Phyra94465;biotype=protein_coding;external_name=C_scaffold_18000007;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 28709 30766 . + . ID=Phyra94465;Parent=Phyra94465;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 28709 28745 . + 0 ID=Phyra94465;Parent=Phyra94465;rank=1 scaffold_18 . exon 28709 28745 . + . ID=Phyra94465.1;Parent=Phyra94465;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 28803 28998 . + 0 ID=Phyra94465;Parent=Phyra94465;rank=2 scaffold_18 . exon 28803 28998 . + . ID=Phyra94465.2;Parent=Phyra94465;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_18 . CDS 29088 29274 . + 0 ID=Phyra94465;Parent=Phyra94465;rank=3 scaffold_18 . exon 29088 29274 . + . ID=Phyra94465.3;Parent=Phyra94465;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 29339 29466 . + 0 ID=Phyra94465;Parent=Phyra94465;rank=4 scaffold_18 . exon 29339 29466 . + . ID=Phyra94465.4;Parent=Phyra94465;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_18 . CDS 29506 29601 . + 0 ID=Phyra94465;Parent=Phyra94465;rank=5 scaffold_18 . exon 29506 29601 . + . ID=Phyra94465.5;Parent=Phyra94465;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_18 . CDS 29683 29801 . + 0 ID=Phyra94465;Parent=Phyra94465;rank=6 scaffold_18 . exon 29683 29801 . + . ID=Phyra94465.6;Parent=Phyra94465;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_18 . CDS 29888 29957 . + 0 ID=Phyra94465;Parent=Phyra94465;rank=7 scaffold_18 . CDS 30107 30158 . + 0 ID=Phyra94465;Parent=Phyra94465;rank=8 scaffold_18 . CDS 30240 30332 . + 0 ID=Phyra94465;Parent=Phyra94465;rank=9 scaffold_18 . CDS 30412 30458 . + 0 ID=Phyra94465;Parent=Phyra94465;rank=10 scaffold_18 . CDS 30530 30580 . + 0 ID=Phyra94465;Parent=Phyra94465;rank=11 scaffold_18 . CDS 30667 30766 . + 0 ID=Phyra94465;Parent=Phyra94465;rank=12 scaffold_18 . biological_region 34117 34117 0.999 + . logic_name=eponine scaffold_18 . biological_region 34189 34190 0.999 - . logic_name=eponine scaffold_18 . biological_region 35675 35677 0.999 - . logic_name=eponine scaffold_18 . biological_region 36195 36201 0.999 - . logic_name=eponine scaffold_18 . biological_region 36286 36290 0.999 + . logic_name=eponine scaffold_18 . biological_region 36977 36984 0.999 + . logic_name=eponine scaffold_18 . repeat_region 37969 38015 . ? . description=trf scaffold_18 . repeat_region 38044 38226 . + . description=(ATG)n scaffold_18 . repeat_region 38091 38127 . ? . description=trf scaffold_18 . repeat_region 38096 38167 . ? . description=trf scaffold_18 . repeat_region 38156 38226 . ? . description=trf scaffold_18 ensembl protein_coding_gene 32877 34394 . - . ID=Phyra76381;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000012;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 32877 34394 . - . ID=Phyra76381;Parent=Phyra76381;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 32877 34394 . - 0 ID=Phyra76381;Parent=Phyra76381;rank=1 scaffold_18 . exon 32877 34394 . - . ID=Phyra76381.1;Parent=Phyra76381;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 34921 36411 . - . ID=Phyra76382;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000013;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 34921 36411 . - . ID=Phyra76382;Parent=Phyra76382;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 34921 36411 . - 0 ID=Phyra76382;Parent=Phyra76382;rank=1 scaffold_18 . exon 34921 36411 . - . ID=Phyra76382.1;Parent=Phyra76382;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 37643 38143 . + . ID=Phyra76383;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000014;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 37643 38143 . + . ID=Phyra76383;Parent=Phyra76383;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 37643 37648 . + 0 ID=Phyra76383;Parent=Phyra76383;rank=1 scaffold_18 . exon 37643 37648 . + . ID=Phyra76383.1;Parent=Phyra76383;constitutive=1;rank=1 scaffold_18 . CDS 37796 38143 . + 0 ID=Phyra76383;Parent=Phyra76383;rank=2 scaffold_18 . exon 37796 38143 . + . ID=Phyra76383.2;Parent=Phyra76383;constitutive=1;rank=2 scaffold_18 ensembl protein_coding_gene 38639 39591 . - . ID=Phyra76384;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000015;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 38639 39591 . - . ID=Phyra76384;Parent=Phyra76384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 38639 38749 . - 0 ID=Phyra76384;Parent=Phyra76384;rank=5 scaffold_18 . exon 38639 38749 . - . ID=Phyra76384.5;Parent=Phyra76384;constitutive=1;rank=5 scaffold_18 . CDS 38819 38932 . - 0 ID=Phyra76384;Parent=Phyra76384;rank=4 scaffold_18 . exon 38819 38932 . - . ID=Phyra76384.4;Parent=Phyra76384;constitutive=1;rank=4 scaffold_18 . CDS 38997 39136 . - 0 ID=Phyra76384;Parent=Phyra76384;rank=3 scaffold_18 . exon 38997 39136 . - . ID=Phyra76384.3;Parent=Phyra76384;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 39209 39467 . - 0 ID=Phyra76384;Parent=Phyra76384;rank=2 scaffold_18 . exon 39209 39467 . - . ID=Phyra76384.2;Parent=Phyra76384;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . CDS 39547 39591 . - 0 ID=Phyra76384;Parent=Phyra76384;rank=1 scaffold_18 . exon 39547 39591 . - . ID=Phyra76384.1;Parent=Phyra76384;constitutive=1;rank=1 scaffold_18 . exon 29888 29957 . + . ID=Phyra94465.7;Parent=Phyra94465;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_18 . exon 30107 30158 . + . ID=Phyra94465.8;Parent=Phyra94465;constitutive=1;ensembl_phase=2;rank=8 scaffold_18 . exon 30240 30332 . + . ID=Phyra94465.9;Parent=Phyra94465;constitutive=1;rank=9 scaffold_18 . exon 30412 30458 . + . ID=Phyra94465.10;Parent=Phyra94465;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_18 . exon 30530 30580 . + . ID=Phyra94465.11;Parent=Phyra94465;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_18 . exon 30667 30766 . + . ID=Phyra94465.12;Parent=Phyra94465;constitutive=1;ensembl_phase=2;rank=12 scaffold_18 ensembl protein_coding_gene 30991 32594 . - . ID=Phyra94466;biotype=protein_coding;external_name=C_scaffold_18000008;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 30991 32594 . - . ID=Phyra94466;Parent=Phyra94466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 30991 31229 . - 0 ID=Phyra94466;Parent=Phyra94466;rank=4 scaffold_18 . exon 30991 31229 . - . ID=Phyra94466.4;Parent=Phyra94466;constitutive=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 31353 31757 . - 0 ID=Phyra94466;Parent=Phyra94466;rank=3 scaffold_18 . exon 31353 31757 . - . ID=Phyra94466.3;Parent=Phyra94466;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 31785 32052 . - 0 ID=Phyra94466;Parent=Phyra94466;rank=2 scaffold_18 . exon 31785 32052 . - . ID=Phyra94466.2;Parent=Phyra94466;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . CDS 32121 32594 . - 0 ID=Phyra94466;Parent=Phyra94466;rank=1 scaffold_18 . exon 32121 32594 . - . ID=Phyra94466.1;Parent=Phyra94466;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 40394 41824 . + . ID=Phyra76385;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000016;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 40394 41824 . + . ID=Phyra76385;Parent=Phyra76385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 40394 41824 . + 0 ID=Phyra76385;Parent=Phyra76385;rank=1 scaffold_18 . exon 40394 41824 . + . ID=Phyra76385.1;Parent=Phyra76385;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 42910 44181 . - . ID=Phyra76386;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000017;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 42910 44181 . - . ID=Phyra76386;Parent=Phyra76386;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 42910 44181 . - 0 ID=Phyra76386;Parent=Phyra76386;rank=1 scaffold_18 . exon 42910 44181 . - . ID=Phyra76386.1;Parent=Phyra76386;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 44741 46015 . - . ID=Phyra76387;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000018;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 44741 46015 . - . ID=Phyra76387;Parent=Phyra76387;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 44741 46015 . - 0 ID=Phyra76387;Parent=Phyra76387;rank=1 scaffold_18 . exon 44741 46015 . - . ID=Phyra76387.1;Parent=Phyra76387;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 46920 49275 . + . ID=Phyra94468;biotype=protein_coding;external_name=C_scaffold_18000010;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 46920 49275 . + . ID=Phyra94468;Parent=Phyra94468;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 46920 47019 . + 0 ID=Phyra94468;Parent=Phyra94468;rank=1 scaffold_18 . exon 46920 47019 . + . ID=Phyra94468.1;Parent=Phyra94468;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 47100 47467 . + 0 ID=Phyra94468;Parent=Phyra94468;rank=2 scaffold_18 . exon 47100 47467 . + . ID=Phyra94468.2;Parent=Phyra94468;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 47969 48122 . + 0 ID=Phyra94468;Parent=Phyra94468;rank=3 scaffold_18 . exon 47969 48122 . + . ID=Phyra94468.3;Parent=Phyra94468;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_18 . CDS 48197 48366 . + 0 ID=Phyra94468;Parent=Phyra94468;rank=4 scaffold_18 . exon 48197 48366 . + . ID=Phyra94468.4;Parent=Phyra94468;constitutive=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 48451 48558 . + 0 ID=Phyra94468;Parent=Phyra94468;rank=5 scaffold_18 . exon 48451 48558 . + . ID=Phyra94468.5;Parent=Phyra94468;constitutive=1;rank=5 scaffold_18 . CDS 48646 49051 . + 0 ID=Phyra94468;Parent=Phyra94468;rank=6 scaffold_18 . exon 48646 49051 . + . ID=Phyra94468.6;Parent=Phyra94468;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_18 . CDS 49130 49275 . + 0 ID=Phyra94468;Parent=Phyra94468;rank=7 scaffold_18 . exon 49130 49275 . + . ID=Phyra94468.7;Parent=Phyra94468;constitutive=1;ensembl_phase=1;rank=7 scaffold_18 . biological_region 54257 54261 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 51576 52473 . + . ID=Phyra76389;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000020;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 51576 52473 . + . ID=Phyra76389;Parent=Phyra76389;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 51576 51889 . + 0 ID=Phyra76389;Parent=Phyra76389;rank=1 scaffold_18 . exon 51576 51889 . + . ID=Phyra76389.1;Parent=Phyra76389;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 51982 52133 . + 0 ID=Phyra76389;Parent=Phyra76389;rank=2 scaffold_18 . exon 51982 52133 . + . ID=Phyra76389.2;Parent=Phyra76389;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 52212 52272 . + 0 ID=Phyra76389;Parent=Phyra76389;rank=3 scaffold_18 . exon 52212 52272 . + . ID=Phyra76389.3;Parent=Phyra76389;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_18 . CDS 52362 52473 . + 0 ID=Phyra76389;Parent=Phyra76389;rank=4 scaffold_18 . exon 52362 52473 . + . ID=Phyra76389.4;Parent=Phyra76389;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 ensembl protein_coding_gene 52663 54270 . - . ID=Phyra76390;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000021;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 52663 54270 . - . ID=Phyra76390;Parent=Phyra76390;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 52663 53628 . - 0 ID=Phyra76390;Parent=Phyra76390;rank=2 scaffold_18 . exon 52663 53628 . - . ID=Phyra76390.2;Parent=Phyra76390;constitutive=1;rank=2 scaffold_18 . CDS 53698 54270 . - 0 ID=Phyra76390;Parent=Phyra76390;rank=1 scaffold_18 . exon 53698 54270 . - . ID=Phyra76390.1;Parent=Phyra76390;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 54440 55707 . + . ID=Phyra76391;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000022;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 54440 55707 . + . ID=Phyra76391;Parent=Phyra76391;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 54440 54570 . + 0 ID=Phyra76391;Parent=Phyra76391;rank=1 scaffold_18 . exon 54440 54570 . + . ID=Phyra76391.1;Parent=Phyra76391;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 54638 55017 . + 0 ID=Phyra76391;Parent=Phyra76391;rank=2 scaffold_18 . exon 54638 55017 . + . ID=Phyra76391.2;Parent=Phyra76391;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 55071 55279 . + 0 ID=Phyra76391;Parent=Phyra76391;rank=3 scaffold_18 . exon 55071 55279 . + . ID=Phyra76391.3;Parent=Phyra76391;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 55388 55583 . + 0 ID=Phyra76391;Parent=Phyra76391;rank=4 scaffold_18 . exon 55388 55583 . + . ID=Phyra76391.4;Parent=Phyra76391;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_18 . CDS 55670 55707 . + 0 ID=Phyra76391;Parent=Phyra76391;rank=5 scaffold_18 . exon 55670 55707 . + . ID=Phyra76391.5;Parent=Phyra76391;constitutive=1;ensembl_phase=1;rank=5 scaffold_18 ensembl protein_coding_gene 55823 56367 . - . ID=Phyra76392;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000023;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 55823 56367 . - . ID=Phyra76392;Parent=Phyra76392;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 55823 56155 . - 0 ID=Phyra76392;Parent=Phyra76392;rank=2 scaffold_18 . exon 55823 56155 . - . ID=Phyra76392.2;Parent=Phyra76392;constitutive=1;rank=2 scaffold_18 . CDS 56218 56367 . - 0 ID=Phyra76392;Parent=Phyra76392;rank=1 scaffold_18 . exon 56218 56367 . - . ID=Phyra76392.1;Parent=Phyra76392;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 57564 58859 . + . ID=Phyra76393;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000024;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 57564 58859 . + . ID=Phyra76393;Parent=Phyra76393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 57564 58859 . + 0 ID=Phyra76393;Parent=Phyra76393;rank=1 scaffold_18 . exon 57564 58859 . + . ID=Phyra76393.1;Parent=Phyra76393;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 59215 61155 . - . ID=Phyra76394;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000025;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 59215 61155 . - . ID=Phyra76394;Parent=Phyra76394;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 59215 61155 . - 0 ID=Phyra76394;Parent=Phyra76394;rank=1 scaffold_18 . exon 59215 61155 . - . ID=Phyra76394.1;Parent=Phyra76394;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 62487 64637 . - . ID=Phyra71412;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000003;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 62487 64637 . - . ID=Phyra71412;Parent=Phyra71412;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 62487 62649 . - 0 ID=Phyra71412;Parent=Phyra71412;rank=7 scaffold_18 . exon 62487 62649 . - . ID=Phyra71412.7;Parent=Phyra71412;constitutive=1;ensembl_phase=2;rank=7 scaffold_18 . CDS 62807 62895 . - 0 ID=Phyra71412;Parent=Phyra71412;rank=6 scaffold_18 . exon 62807 62895 . - . ID=Phyra71412.6;Parent=Phyra71412;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_18 . CDS 63028 63133 . - 0 ID=Phyra71412;Parent=Phyra71412;rank=5 scaffold_18 . exon 63028 63133 . - . ID=Phyra71412.5;Parent=Phyra71412;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 . CDS 63399 63524 . - 0 ID=Phyra71412;Parent=Phyra71412;rank=4 scaffold_18 . exon 63399 63524 . - . ID=Phyra71412.4;Parent=Phyra71412;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_18 . CDS 63608 63693 . - 0 ID=Phyra71412;Parent=Phyra71412;rank=3 scaffold_18 . exon 63608 63693 . - . ID=Phyra71412.3;Parent=Phyra71412;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_18 . CDS 63778 64066 . - 0 ID=Phyra71412;Parent=Phyra71412;rank=2 scaffold_18 . exon 63778 64066 . - . ID=Phyra71412.2;Parent=Phyra71412;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 64156 64637 . - 0 ID=Phyra71412;Parent=Phyra71412;rank=1 scaffold_18 . exon 64156 64637 . - . ID=Phyra71412.1;Parent=Phyra71412;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 ensembl protein_coding_gene 64873 65847 . - . ID=Phyra71413;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000004;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 64873 65847 . - . ID=Phyra71413;Parent=Phyra71413;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 64873 65847 . - 0 ID=Phyra71413;Parent=Phyra71413;rank=1 scaffold_18 . exon 64873 65847 . - . ID=Phyra71413.1;Parent=Phyra71413;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 66327 67264 . - . ID=Phyra76397;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000028;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 66327 67264 . - . ID=Phyra76397;Parent=Phyra76397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 66327 66637 . - 0 ID=Phyra76397;Parent=Phyra76397;rank=2 scaffold_18 . exon 66327 66637 . - . ID=Phyra76397.2;Parent=Phyra76397;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 66661 67264 . - 0 ID=Phyra76397;Parent=Phyra76397;rank=1 scaffold_18 . exon 66661 67264 . - . ID=Phyra76397.1;Parent=Phyra76397;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 67853 71940 . - . ID=Phyra76398;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000029;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 67853 71940 . - . ID=Phyra76398;Parent=Phyra76398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 67853 70453 . - 0 ID=Phyra76398;Parent=Phyra76398;rank=2 scaffold_18 . exon 67853 70453 . - . ID=Phyra76398.2;Parent=Phyra76398;constitutive=1;rank=2 scaffold_18 . CDS 70534 71940 . - 0 ID=Phyra76398;Parent=Phyra76398;rank=1 scaffold_18 . biological_region 71601 71603 0.999 + . logic_name=eponine scaffold_18 . biological_region 71810 71812 0.999 + . logic_name=eponine scaffold_18 . repeat_region 73169 73188 . ? . description=trf scaffold_18 . biological_region 73669 73674 0.999 + . logic_name=eponine scaffold_18 . biological_region 74326 74328 0.999 + . logic_name=eponine scaffold_18 . repeat_region 75834 75857 . ? . description=dust scaffold_18 . repeat_region 78386 78396 . ? . description=dust scaffold_18 . exon 70534 71940 . - . ID=Phyra76398.1;Parent=Phyra76398;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 72476 73234 . + . ID=Phyra76399;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000030;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 72476 73234 . + . ID=Phyra76399;Parent=Phyra76399;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 72476 73234 . + 0 ID=Phyra76399;Parent=Phyra76399;rank=1 scaffold_18 . exon 72476 73234 . + . ID=Phyra76399.1;Parent=Phyra76399;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 73547 74524 . + . ID=Phyra76400;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000031;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 73547 74524 . + . ID=Phyra76400;Parent=Phyra76400;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 73547 73614 . + 0 ID=Phyra76400;Parent=Phyra76400;rank=1 scaffold_18 . exon 73547 73614 . + . ID=Phyra76400.1;Parent=Phyra76400;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 73676 73825 . + 0 ID=Phyra76400;Parent=Phyra76400;rank=2 scaffold_18 . exon 73676 73825 . + . ID=Phyra76400.2;Parent=Phyra76400;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_18 . CDS 73909 74064 . + 0 ID=Phyra76400;Parent=Phyra76400;rank=3 scaffold_18 . exon 73909 74064 . + . ID=Phyra76400.3;Parent=Phyra76400;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_18 . CDS 74131 74247 . + 0 ID=Phyra76400;Parent=Phyra76400;rank=4 scaffold_18 . exon 74131 74247 . + . ID=Phyra76400.4;Parent=Phyra76400;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_18 . CDS 74326 74524 . + 0 ID=Phyra76400;Parent=Phyra76400;rank=5 scaffold_18 . exon 74326 74524 . + . ID=Phyra76400.5;Parent=Phyra76400;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 ensembl protein_coding_gene 76770 77420 . + . ID=Phyra76401;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000032;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 76770 77420 . + . ID=Phyra76401;Parent=Phyra76401;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 76770 77060 . + 0 ID=Phyra76401;Parent=Phyra76401;rank=1 scaffold_18 . exon 76770 77060 . + . ID=Phyra76401.1;Parent=Phyra76401;constitutive=1;rank=1 scaffold_18 . CDS 77134 77228 . + 0 ID=Phyra76401;Parent=Phyra76401;rank=2 scaffold_18 . exon 77134 77228 . + . ID=Phyra76401.2;Parent=Phyra76401;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_18 . CDS 77294 77420 . + 0 ID=Phyra76401;Parent=Phyra76401;rank=3 scaffold_18 . exon 77294 77420 . + . ID=Phyra76401.3;Parent=Phyra76401;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 ensembl protein_coding_gene 77629 80216 . - . ID=Phyra76402;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000033;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 77629 80216 . - . ID=Phyra76402;Parent=Phyra76402;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 77629 77718 . - 0 ID=Phyra76402;Parent=Phyra76402;rank=10 scaffold_18 . exon 77629 77718 . - . ID=Phyra76402.10;Parent=Phyra76402;constitutive=1;rank=10 scaffold_18 . CDS 77810 77992 . - 0 ID=Phyra76402;Parent=Phyra76402;rank=9 scaffold_18 . exon 77810 77992 . - . ID=Phyra76402.9;Parent=Phyra76402;constitutive=1;rank=9 scaffold_18 . CDS 78069 78148 . - 0 ID=Phyra76402;Parent=Phyra76402;rank=8 scaffold_18 . exon 78069 78148 . - . ID=Phyra76402.8;Parent=Phyra76402;constitutive=1;ensembl_phase=1;rank=8 scaffold_18 . CDS 78606 78828 . - 0 ID=Phyra76402;Parent=Phyra76402;rank=7 scaffold_18 . exon 78606 78828 . - . ID=Phyra76402.7;Parent=Phyra76402;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_18 . CDS 78897 78962 . - 0 ID=Phyra76402;Parent=Phyra76402;rank=6 scaffold_18 . exon 78897 78962 . - . ID=Phyra76402.6;Parent=Phyra76402;constitutive=1;rank=6 scaffold_18 . CDS 79037 79156 . - 0 ID=Phyra76402;Parent=Phyra76402;rank=5 scaffold_18 . exon 79037 79156 . - . ID=Phyra76402.5;Parent=Phyra76402;constitutive=1;rank=5 scaffold_18 . CDS 79230 79305 . - 0 ID=Phyra76402;Parent=Phyra76402;rank=4 scaffold_18 . exon 79230 79305 . - . ID=Phyra76402.4;Parent=Phyra76402;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 . CDS 79384 79646 . - 0 ID=Phyra76402;Parent=Phyra76402;rank=3 scaffold_18 . exon 79384 79646 . - . ID=Phyra76402.3;Parent=Phyra76402;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_18 . CDS 79845 79979 . - 0 ID=Phyra76402;Parent=Phyra76402;rank=2 scaffold_18 . CDS 80046 80216 . - 0 ID=Phyra76402;Parent=Phyra76402;rank=1 scaffold_18 ensembl protein_coding_gene 82197 84284 . - . ID=Phyra43204;biotype=protein_coding;external_name=gwEuk.18.167.1;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 82197 84284 . - . ID=Phyra43204;Parent=Phyra43204;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 82197 82328 . - 0 ID=Phyra43204;Parent=Phyra43204;rank=3 scaffold_18 . exon 82197 82328 . - . ID=Phyra43204.3;Parent=Phyra43204;constitutive=1;rank=3 scaffold_18 . CDS 82399 83071 . - 0 ID=Phyra43204;Parent=Phyra43204;rank=2 scaffold_18 . exon 82399 83071 . - . ID=Phyra43204.2;Parent=Phyra43204;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 83452 84284 . - 0 ID=Phyra43204;Parent=Phyra43204;rank=1 scaffold_18 . exon 83452 84284 . - . ID=Phyra43204.1;Parent=Phyra43204;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . exon 79845 79979 . - . ID=Phyra76402.2;Parent=Phyra76402;constitutive=1;rank=2 scaffold_18 . exon 80046 80216 . - . ID=Phyra76402.1;Parent=Phyra76402;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 80591 81013 . - . ID=Phyra76403;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000034;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 80591 81013 . - . ID=Phyra76403;Parent=Phyra76403;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 80591 80658 . - 0 ID=Phyra76403;Parent=Phyra76403;rank=2 scaffold_18 . exon 80591 80658 . - . ID=Phyra76403.2;Parent=Phyra76403;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 80710 81013 . - 0 ID=Phyra76403;Parent=Phyra76403;rank=1 scaffold_18 . exon 80710 81013 . - . ID=Phyra76403.1;Parent=Phyra76403;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 81316 82086 . + . ID=Phyra76404;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000035;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 81316 82086 . + . ID=Phyra76404;Parent=Phyra76404;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 81316 82086 . + 0 ID=Phyra76404;Parent=Phyra76404;rank=1 scaffold_18 . exon 81316 82086 . + . ID=Phyra76404.1;Parent=Phyra76404;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 88110 90209 . - . ID=Phyra76406;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000037;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 88110 90209 . - . ID=Phyra76406;Parent=Phyra76406;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 88110 88134 . - 0 ID=Phyra76406;Parent=Phyra76406;rank=6 scaffold_18 . exon 88110 88134 . - . ID=Phyra76406.6;Parent=Phyra76406;constitutive=1;ensembl_phase=2;rank=6 scaffold_18 . CDS 88236 88312 . - 0 ID=Phyra76406;Parent=Phyra76406;rank=5 scaffold_18 . exon 88236 88312 . - . ID=Phyra76406.5;Parent=Phyra76406;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_18 . CDS 88872 88999 . - 0 ID=Phyra76406;Parent=Phyra76406;rank=4 scaffold_18 . exon 88872 88999 . - . ID=Phyra76406.4;Parent=Phyra76406;constitutive=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 89036 89233 . - 0 ID=Phyra76406;Parent=Phyra76406;rank=3 scaffold_18 . exon 89036 89233 . - . ID=Phyra76406.3;Parent=Phyra76406;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 89258 89275 . - 0 ID=Phyra76406;Parent=Phyra76406;rank=2 scaffold_18 . exon 89258 89275 . - . ID=Phyra76406.2;Parent=Phyra76406;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 89330 90209 . - 0 ID=Phyra76406;Parent=Phyra76406;rank=1 scaffold_18 . exon 89330 90209 . - . ID=Phyra76406.1;Parent=Phyra76406;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . biological_region 89547 89550 0.999 + . logic_name=eponine scaffold_18 . biological_region 89732 89733 0.999 + . logic_name=eponine scaffold_18 . biological_region 93005 93007 0.999 + . logic_name=eponine scaffold_18 . repeat_region 93401 93408 . ? . description=dust scaffold_18 . biological_region 98328 98332 0.999 + . logic_name=eponine scaffold_18 ensembl protein_coding_gene 93840 95582 . - . ID=Phyra71414;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000005;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 93840 95582 . - . ID=Phyra71414;Parent=Phyra71414;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 93840 95582 . - 0 ID=Phyra71414;Parent=Phyra71414;rank=1 scaffold_18 . exon 93840 95582 . - . ID=Phyra71414.1;Parent=Phyra71414;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 96160 96861 . - . ID=Phyra71415;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000006;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 96160 96861 . - . ID=Phyra71415;Parent=Phyra71415;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 96160 96222 . - 0 ID=Phyra71415;Parent=Phyra71415;rank=4 scaffold_18 . exon 96160 96222 . - . ID=Phyra71415.4;Parent=Phyra71415;constitutive=1;rank=4 scaffold_18 . CDS 96293 96408 . - 0 ID=Phyra71415;Parent=Phyra71415;rank=3 scaffold_18 . exon 96293 96408 . - . ID=Phyra71415.3;Parent=Phyra71415;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 96502 96640 . - 0 ID=Phyra71415;Parent=Phyra71415;rank=2 scaffold_18 . exon 96502 96640 . - . ID=Phyra71415.2;Parent=Phyra71415;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . CDS 96712 96861 . - 0 ID=Phyra71415;Parent=Phyra71415;rank=1 scaffold_18 . exon 96712 96861 . - . ID=Phyra71415.1;Parent=Phyra71415;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 91313 91797 . + . ID=Phyra76407;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000038;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 91313 91797 . + . ID=Phyra76407;Parent=Phyra76407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 91313 91519 . + 0 ID=Phyra76407;Parent=Phyra76407;rank=1 scaffold_18 . exon 91313 91519 . + . ID=Phyra76407.1;Parent=Phyra76407;constitutive=1;rank=1 scaffold_18 . CDS 91591 91797 . + 0 ID=Phyra76407;Parent=Phyra76407;rank=2 scaffold_18 . exon 91591 91797 . + . ID=Phyra76407.2;Parent=Phyra76407;constitutive=1;rank=2 scaffold_18 ensembl protein_coding_gene 92062 93110 . - . ID=Phyra76408;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000039;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 92062 93110 . - . ID=Phyra76408;Parent=Phyra76408;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 92062 92685 . - 0 ID=Phyra76408;Parent=Phyra76408;rank=4 scaffold_18 . exon 92062 92685 . - . ID=Phyra76408.4;Parent=Phyra76408;constitutive=1;rank=4 scaffold_18 . CDS 92757 92816 . - 0 ID=Phyra76408;Parent=Phyra76408;rank=3 scaffold_18 . exon 92757 92816 . - . ID=Phyra76408.3;Parent=Phyra76408;constitutive=1;rank=3 scaffold_18 . CDS 92892 92956 . - 0 ID=Phyra76408;Parent=Phyra76408;rank=2 scaffold_18 . exon 92892 92956 . - . ID=Phyra76408.2;Parent=Phyra76408;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 93065 93110 . - 0 ID=Phyra76408;Parent=Phyra76408;rank=1 scaffold_18 . exon 93065 93110 . - . ID=Phyra76408.1;Parent=Phyra76408;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 96987 97661 . + . ID=Phyra76411;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000042;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 96987 97661 . + . ID=Phyra76411;Parent=Phyra76411;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 96987 97661 . + 0 ID=Phyra76411;Parent=Phyra76411;rank=1 scaffold_18 . exon 96987 97661 . + . ID=Phyra76411.1;Parent=Phyra76411;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 97882 98625 . - . ID=Phyra76412;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000043;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 97882 98625 . - . ID=Phyra76412;Parent=Phyra76412;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 97882 98625 . - 0 ID=Phyra76412;Parent=Phyra76412;rank=1 scaffold_18 . exon 97882 98625 . - . ID=Phyra76412.1;Parent=Phyra76412;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 98815 100305 . + . ID=Phyra76413;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000044;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 98815 100305 . + . ID=Phyra76413;Parent=Phyra76413;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 98815 100305 . + 0 ID=Phyra76413;Parent=Phyra76413;rank=1 scaffold_18 . exon 98815 100305 . + . ID=Phyra76413.1;Parent=Phyra76413;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 100628 101199 . - . ID=Phyra71416;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000007;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 100628 101199 . - . ID=Phyra71416;Parent=Phyra71416;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 100628 100894 . - 0 ID=Phyra71416;Parent=Phyra71416;rank=3 scaffold_18 . exon 100628 100894 . - . ID=Phyra71416.3;Parent=Phyra71416;constitutive=1;rank=3 scaffold_18 . CDS 100985 101124 . - 0 ID=Phyra71416;Parent=Phyra71416;rank=2 scaffold_18 . exon 100985 101124 . - . ID=Phyra71416.2;Parent=Phyra71416;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 101178 101199 . - 0 ID=Phyra71416;Parent=Phyra71416;rank=1 scaffold_18 . exon 101178 101199 . - . ID=Phyra71416.1;Parent=Phyra71416;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 101675 105628 . - . ID=Phyra76415;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000046;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 101675 105628 . - . ID=Phyra76415;Parent=Phyra76415;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 101675 105628 . - 0 ID=Phyra76415;Parent=Phyra76415;rank=1 scaffold_18 . exon 101675 105628 . - . ID=Phyra76415.1;Parent=Phyra76415;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 105761 108067 . + . ID=Phyra76416;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000047;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 105761 108067 . + . ID=Phyra76416;Parent=Phyra76416;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 105761 108067 . + 0 ID=Phyra76416;Parent=Phyra76416;rank=1 scaffold_18 . exon 105761 108067 . + . ID=Phyra76416.1;Parent=Phyra76416;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 108219 111412 . - . ID=Phyra76417;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000048;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 108219 111412 . - . ID=Phyra76417;Parent=Phyra76417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 108219 110972 . - 0 ID=Phyra76417;Parent=Phyra76417;rank=3 scaffold_18 . exon 108219 110972 . - . ID=Phyra76417.3;Parent=Phyra76417;constitutive=1;rank=3 scaffold_18 . CDS 111034 111315 . - 0 ID=Phyra76417;Parent=Phyra76417;rank=2 scaffold_18 . CDS 111380 111412 . - 0 ID=Phyra76417;Parent=Phyra76417;rank=1 scaffold_18 . repeat_region 113067 113090 . ? . description=trf scaffold_18 . biological_region 113496 113500 0.999 - . logic_name=eponine scaffold_18 . biological_region 115950 115952 0.999 + . logic_name=eponine scaffold_18 . exon 111034 111315 . - . ID=Phyra76417.2;Parent=Phyra76417;constitutive=1;rank=2 scaffold_18 . exon 111380 111412 . - . ID=Phyra76417.1;Parent=Phyra76417;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 112200 112859 . + . ID=Phyra76418;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000049;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 112200 112859 . + . ID=Phyra76418;Parent=Phyra76418;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 112200 112859 . + 0 ID=Phyra76418;Parent=Phyra76418;rank=1 scaffold_18 . exon 112200 112859 . + . ID=Phyra76418.1;Parent=Phyra76418;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 113664 114371 . + . ID=Phyra76419;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000050;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 113664 114371 . + . ID=Phyra76419;Parent=Phyra76419;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 113664 114371 . + 0 ID=Phyra76419;Parent=Phyra76419;rank=1 scaffold_18 . exon 113664 114371 . + . ID=Phyra76419.1;Parent=Phyra76419;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 115818 116597 . - . ID=Phyra76420;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000051;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 115818 116597 . - . ID=Phyra76420;Parent=Phyra76420;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 115818 116597 . - 0 ID=Phyra76420;Parent=Phyra76420;rank=1 scaffold_18 . exon 115818 116597 . - . ID=Phyra76420.1;Parent=Phyra76420;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 117268 117939 . - . ID=Phyra76421;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000052;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 117268 117939 . - . ID=Phyra76421;Parent=Phyra76421;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 117268 117939 . - 0 ID=Phyra76421;Parent=Phyra76421;rank=1 scaffold_18 . exon 117268 117939 . - . ID=Phyra76421.1;Parent=Phyra76421;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 118660 119385 . - . ID=Phyra76422;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000053;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 118660 119385 . - . ID=Phyra76422;Parent=Phyra76422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 118660 119385 . - 0 ID=Phyra76422;Parent=Phyra76422;rank=1 scaffold_18 . exon 118660 119385 . - . ID=Phyra76422.1;Parent=Phyra76422;constitutive=1;rank=1 scaffold_18 . repeat_region 120734 120742 . ? . description=dust scaffold_18 ensembl protein_coding_gene 123639 124094 . + . ID=Phyra71417;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000008;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 123639 124094 . + . ID=Phyra71417;Parent=Phyra71417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 123639 123916 . + 0 ID=Phyra71417;Parent=Phyra71417;rank=1 scaffold_18 . exon 123639 123916 . + . ID=Phyra71417.1;Parent=Phyra71417;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 123978 124023 . + 0 ID=Phyra71417;Parent=Phyra71417;rank=2 scaffold_18 . exon 123978 124023 . + . ID=Phyra71417.2;Parent=Phyra71417;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 124047 124094 . + 0 ID=Phyra71417;Parent=Phyra71417;rank=3 scaffold_18 . exon 124047 124094 . + . ID=Phyra71417.3;Parent=Phyra71417;constitutive=1;rank=3 scaffold_18 ensembl protein_coding_gene 120753 121586 . + . ID=Phyra76423;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000054;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 120753 121586 . + . ID=Phyra76423;Parent=Phyra76423;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 120753 121586 . + 0 ID=Phyra76423;Parent=Phyra76423;rank=1 scaffold_18 . exon 120753 121586 . + . ID=Phyra76423.1;Parent=Phyra76423;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 121904 122875 . - . ID=Phyra76424;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000055;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 121904 122875 . - . ID=Phyra76424;Parent=Phyra76424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 121904 122875 . - 0 ID=Phyra76424;Parent=Phyra76424;rank=1 scaffold_18 . exon 121904 122875 . - . ID=Phyra76424.1;Parent=Phyra76424;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 124529 127826 . - . ID=Phyra76426;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000057;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 124529 127826 . - . ID=Phyra76426;Parent=Phyra76426;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 124529 124665 . - 0 ID=Phyra76426;Parent=Phyra76426;rank=13 scaffold_18 . exon 124529 124665 . - . ID=Phyra76426.13;Parent=Phyra76426;constitutive=1;ensembl_phase=1;rank=13 scaffold_18 . CDS 124737 125012 . - 0 ID=Phyra76426;Parent=Phyra76426;rank=12 scaffold_18 . exon 124737 125012 . - . ID=Phyra76426.12;Parent=Phyra76426;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_18 . CDS 125546 125567 . - 0 ID=Phyra76426;Parent=Phyra76426;rank=11 scaffold_18 . exon 125546 125567 . - . ID=Phyra76426.11;Parent=Phyra76426;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_18 . CDS 125603 125935 . - 0 ID=Phyra76426;Parent=Phyra76426;rank=10 scaffold_18 . exon 125603 125935 . - . ID=Phyra76426.10;Parent=Phyra76426;constitutive=1;rank=10 scaffold_18 . CDS 125991 126026 . - 0 ID=Phyra76426;Parent=Phyra76426;rank=9 scaffold_18 . exon 125991 126026 . - . ID=Phyra76426.9;Parent=Phyra76426;constitutive=1;rank=9 scaffold_18 . CDS 126243 126327 . - 0 ID=Phyra76426;Parent=Phyra76426;rank=8 scaffold_18 . exon 126243 126327 . - . ID=Phyra76426.8;Parent=Phyra76426;constitutive=1;ensembl_phase=2;rank=8 scaffold_18 . CDS 126400 126484 . - 0 ID=Phyra76426;Parent=Phyra76426;rank=7 scaffold_18 . exon 126400 126484 . - . ID=Phyra76426.7;Parent=Phyra76426;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_18 . CDS 126557 126680 . - 0 ID=Phyra76426;Parent=Phyra76426;rank=6 scaffold_18 . exon 126557 126680 . - . ID=Phyra76426.6;Parent=Phyra76426;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_18 . CDS 126748 126971 . - 0 ID=Phyra76426;Parent=Phyra76426;rank=5 scaffold_18 . exon 126748 126971 . - . ID=Phyra76426.5;Parent=Phyra76426;constitutive=1;ensembl_phase=1;rank=5 scaffold_18 . CDS 127086 127247 . - 0 ID=Phyra76426;Parent=Phyra76426;rank=4 scaffold_18 . exon 127086 127247 . - . ID=Phyra76426.4;Parent=Phyra76426;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 127406 127502 . - 0 ID=Phyra76426;Parent=Phyra76426;rank=3 scaffold_18 . exon 127406 127502 . - . ID=Phyra76426.3;Parent=Phyra76426;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_18 . CDS 127571 127665 . - 0 ID=Phyra76426;Parent=Phyra76426;rank=2 scaffold_18 . exon 127571 127665 . - . ID=Phyra76426.2;Parent=Phyra76426;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 127745 127826 . - 0 ID=Phyra76426;Parent=Phyra76426;rank=1 scaffold_18 . exon 127745 127826 . - . ID=Phyra76426.1;Parent=Phyra76426;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 128059 129381 . + . ID=Phyra76427;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000058;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 128059 129381 . + . ID=Phyra76427;Parent=Phyra76427;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 128059 129381 . + 0 ID=Phyra76427;Parent=Phyra76427;rank=1 scaffold_18 . exon 128059 129381 . + . ID=Phyra76427.1;Parent=Phyra76427;constitutive=1;rank=1 scaffold_18 . biological_region 131557 131558 0.999 + . logic_name=eponine scaffold_18 . biological_region 134190 134192 0.999 + . logic_name=eponine scaffold_18 . biological_region 136002 136006 0.999 + . logic_name=eponine scaffold_18 . biological_region 136423 136430 0.999 + . logic_name=eponine scaffold_18 . biological_region 136522 136523 0.999 + . logic_name=eponine scaffold_18 . biological_region 136534 136541 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 130427 132220 . + . ID=Phyra76428;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000059;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 130427 132220 . + . ID=Phyra76428;Parent=Phyra76428;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 130427 130684 . + 0 ID=Phyra76428;Parent=Phyra76428;rank=1 scaffold_18 . exon 130427 130684 . + . ID=Phyra76428.1;Parent=Phyra76428;constitutive=1;rank=1 scaffold_18 . CDS 130773 130903 . + 0 ID=Phyra76428;Parent=Phyra76428;rank=2 scaffold_18 . exon 130773 130903 . + . ID=Phyra76428.2;Parent=Phyra76428;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_18 . CDS 130981 131173 . + 0 ID=Phyra76428;Parent=Phyra76428;rank=3 scaffold_18 . exon 130981 131173 . + . ID=Phyra76428.3;Parent=Phyra76428;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 131252 131348 . + 0 ID=Phyra76428;Parent=Phyra76428;rank=4 scaffold_18 . exon 131252 131348 . + . ID=Phyra76428.4;Parent=Phyra76428;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_18 . CDS 131418 131488 . + 0 ID=Phyra76428;Parent=Phyra76428;rank=5 scaffold_18 . exon 131418 131488 . + . ID=Phyra76428.5;Parent=Phyra76428;constitutive=1;ensembl_phase=1;rank=5 scaffold_18 . CDS 131555 131715 . + 0 ID=Phyra76428;Parent=Phyra76428;rank=6 scaffold_18 . exon 131555 131715 . + . ID=Phyra76428.6;Parent=Phyra76428;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_18 . CDS 131789 131879 . + 0 ID=Phyra76428;Parent=Phyra76428;rank=7 scaffold_18 . exon 131789 131879 . + . ID=Phyra76428.7;Parent=Phyra76428;constitutive=1;ensembl_phase=2;rank=7 scaffold_18 . CDS 131961 132029 . + 0 ID=Phyra76428;Parent=Phyra76428;rank=8 scaffold_18 . exon 131961 132029 . + . ID=Phyra76428.8;Parent=Phyra76428;constitutive=1;rank=8 scaffold_18 . CDS 132110 132220 . + 0 ID=Phyra76428;Parent=Phyra76428;rank=9 scaffold_18 . exon 132110 132220 . + . ID=Phyra76428.9;Parent=Phyra76428;constitutive=1;rank=9 scaffold_18 ensembl protein_coding_gene 137212 137682 . + . ID=Phyra76431;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000062;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 137212 137682 . + . ID=Phyra76431;Parent=Phyra76431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 137212 137682 . + 0 ID=Phyra76431;Parent=Phyra76431;rank=1 scaffold_18 . exon 137212 137682 . + . ID=Phyra76431.1;Parent=Phyra76431;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 137879 139926 . - . ID=Phyra76432;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000063;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 137879 139926 . - . ID=Phyra76432;Parent=Phyra76432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 137879 138010 . - 0 ID=Phyra76432;Parent=Phyra76432;rank=7 scaffold_18 . exon 137879 138010 . - . ID=Phyra76432.7;Parent=Phyra76432;constitutive=1;rank=7 scaffold_18 . CDS 138078 138353 . - 0 ID=Phyra76432;Parent=Phyra76432;rank=6 scaffold_18 . exon 138078 138353 . - . ID=Phyra76432.6;Parent=Phyra76432;constitutive=1;rank=6 scaffold_18 . CDS 138437 138665 . - 0 ID=Phyra76432;Parent=Phyra76432;rank=5 scaffold_18 . exon 138437 138665 . - . ID=Phyra76432.5;Parent=Phyra76432;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 . CDS 138730 138833 . - 0 ID=Phyra76432;Parent=Phyra76432;rank=4 scaffold_18 . exon 138730 138833 . - . ID=Phyra76432.4;Parent=Phyra76432;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_18 . CDS 138910 139629 . - 0 ID=Phyra76432;Parent=Phyra76432;rank=3 scaffold_18 . exon 138910 139629 . - . ID=Phyra76432.3;Parent=Phyra76432;constitutive=1;rank=3 scaffold_18 . CDS 139659 139682 . - 0 ID=Phyra76432;Parent=Phyra76432;rank=2 scaffold_18 . CDS 139849 139926 . - 0 ID=Phyra76432;Parent=Phyra76432;rank=1 scaffold_18 ensembl protein_coding_gene 132470 134086 . - . ID=Phyra94478;biotype=protein_coding;external_name=C_scaffold_18000020;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 132470 134086 . - . ID=Phyra94478;Parent=Phyra94478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 132470 132484 . - 0 ID=Phyra94478;Parent=Phyra94478;rank=5 scaffold_18 . exon 132470 132484 . - . ID=Phyra94478.5;Parent=Phyra94478;constitutive=1;rank=5 scaffold_18 . CDS 132687 133026 . - 0 ID=Phyra94478;Parent=Phyra94478;rank=4 scaffold_18 . exon 132687 133026 . - . ID=Phyra94478.4;Parent=Phyra94478;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 . CDS 133103 133109 . - 0 ID=Phyra94478;Parent=Phyra94478;rank=3 scaffold_18 . exon 133103 133109 . - . ID=Phyra94478.3;Parent=Phyra94478;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_18 . CDS 133303 133503 . - 0 ID=Phyra94478;Parent=Phyra94478;rank=2 scaffold_18 . exon 133303 133503 . - . ID=Phyra94478.2;Parent=Phyra94478;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 133594 134086 . - 0 ID=Phyra94478;Parent=Phyra94478;rank=1 scaffold_18 . exon 133594 134086 . - . ID=Phyra94478.1;Parent=Phyra94478;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 134204 135020 . + . ID=Phyra94480;biotype=protein_coding;external_name=C_scaffold_18000022;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 134204 135020 . + . ID=Phyra94480;Parent=Phyra94480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 134204 134292 . + 0 ID=Phyra94480;Parent=Phyra94480;rank=1 scaffold_18 . exon 134204 134292 . + . ID=Phyra94480.1;Parent=Phyra94480;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 134356 134515 . + 0 ID=Phyra94480;Parent=Phyra94480;rank=2 scaffold_18 . exon 134356 134515 . + . ID=Phyra94480.2;Parent=Phyra94480;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 134582 134645 . + 0 ID=Phyra94480;Parent=Phyra94480;rank=3 scaffold_18 . exon 134582 134645 . + . ID=Phyra94480.3;Parent=Phyra94480;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_18 . CDS 134688 134771 . + 0 ID=Phyra94480;Parent=Phyra94480;rank=4 scaffold_18 . exon 134688 134771 . + . ID=Phyra94480.4;Parent=Phyra94480;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 134839 135020 . + 0 ID=Phyra94480;Parent=Phyra94480;rank=5 scaffold_18 . exon 134839 135020 . + . ID=Phyra94480.5;Parent=Phyra94480;constitutive=1;ensembl_phase=1;rank=5 scaffold_18 . exon 139659 139682 . - . ID=Phyra76432.2;Parent=Phyra76432;constitutive=1;rank=2 scaffold_18 . exon 139849 139926 . - . ID=Phyra76432.1;Parent=Phyra76432;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 140323 142139 . - . ID=Phyra76433;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000064;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 140323 142139 . - . ID=Phyra76433;Parent=Phyra76433;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 140323 141231 . - 0 ID=Phyra76433;Parent=Phyra76433;rank=3 scaffold_18 . exon 140323 141231 . - . ID=Phyra76433.3;Parent=Phyra76433;constitutive=1;rank=3 scaffold_18 . CDS 141302 141422 . - 0 ID=Phyra76433;Parent=Phyra76433;rank=2 scaffold_18 . exon 141302 141422 . - . ID=Phyra76433.2;Parent=Phyra76433;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 141496 142139 . - 0 ID=Phyra76433;Parent=Phyra76433;rank=1 scaffold_18 . exon 141496 142139 . - . ID=Phyra76433.1;Parent=Phyra76433;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 ensembl protein_coding_gene 142315 143001 . + . ID=Phyra76434;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000065;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 142315 143001 . + . ID=Phyra76434;Parent=Phyra76434;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 142315 142339 . + 0 ID=Phyra76434;Parent=Phyra76434;rank=1 scaffold_18 . exon 142315 142339 . + . ID=Phyra76434.1;Parent=Phyra76434;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 142389 142442 . + 0 ID=Phyra76434;Parent=Phyra76434;rank=2 scaffold_18 . exon 142389 142442 . + . ID=Phyra76434.2;Parent=Phyra76434;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 142513 142572 . + 0 ID=Phyra76434;Parent=Phyra76434;rank=3 scaffold_18 . exon 142513 142572 . + . ID=Phyra76434.3;Parent=Phyra76434;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 142635 142707 . + 0 ID=Phyra76434;Parent=Phyra76434;rank=4 scaffold_18 . exon 142635 142707 . + . ID=Phyra76434.4;Parent=Phyra76434;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_18 . CDS 142784 142852 . + 0 ID=Phyra76434;Parent=Phyra76434;rank=5 scaffold_18 . exon 142784 142852 . + . ID=Phyra76434.5;Parent=Phyra76434;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_18 . CDS 142923 143001 . + 0 ID=Phyra76434;Parent=Phyra76434;rank=6 scaffold_18 . exon 142923 143001 . + . ID=Phyra76434.6;Parent=Phyra76434;constitutive=1;ensembl_phase=2;rank=6 scaffold_18 ensembl protein_coding_gene 145008 148561 . - . ID=Phyra76435;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000066;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 145008 148561 . - . ID=Phyra76435;Parent=Phyra76435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 145008 145817 . - 0 ID=Phyra76435;Parent=Phyra76435;rank=2 scaffold_18 . exon 145008 145817 . - . ID=Phyra76435.2;Parent=Phyra76435;constitutive=1;rank=2 scaffold_18 . CDS 145892 148561 . - 0 ID=Phyra76435;Parent=Phyra76435;rank=1 scaffold_18 . exon 145892 148561 . - . ID=Phyra76435.1;Parent=Phyra76435;constitutive=1;rank=1 scaffold_18 . repeat_region 149526 149605 . ? . description=trf scaffold_18 . repeat_region 152003 152021 . ? . description=dust scaffold_18 . repeat_region 153188 153195 . ? . description=dust scaffold_18 . biological_region 157165 157165 0.999 + . logic_name=eponine scaffold_18 . biological_region 158295 158298 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 153701 153919 . - . ID=Phyra43241;biotype=protein_coding;external_name=gwEuk.18.204.1;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 153701 153919 . - . ID=Phyra43241;Parent=Phyra43241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 153701 153919 . - 0 ID=Phyra43241;Parent=Phyra43241;rank=1 scaffold_18 . exon 153701 153919 . - . ID=Phyra43241.1;Parent=Phyra43241;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 154894 157313 . - . ID=Phyra76436;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000067;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 154894 157313 . - . ID=Phyra76436;Parent=Phyra76436;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 154894 155823 . - 0 ID=Phyra76436;Parent=Phyra76436;rank=2 scaffold_18 . exon 154894 155823 . - . ID=Phyra76436.2;Parent=Phyra76436;constitutive=1;rank=2 scaffold_18 . CDS 155877 157313 . - 0 ID=Phyra76436;Parent=Phyra76436;rank=1 scaffold_18 . exon 155877 157313 . - . ID=Phyra76436.1;Parent=Phyra76436;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 158019 159427 . + . ID=Phyra76437;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000068;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 158019 159427 . + . ID=Phyra76437;Parent=Phyra76437;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 158019 158164 . + 0 ID=Phyra76437;Parent=Phyra76437;rank=1 scaffold_18 . exon 158019 158164 . + . ID=Phyra76437.1;Parent=Phyra76437;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 158363 158375 . + 0 ID=Phyra76437;Parent=Phyra76437;rank=2 scaffold_18 . exon 158363 158375 . + . ID=Phyra76437.2;Parent=Phyra76437;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 158490 158830 . + 0 ID=Phyra76437;Parent=Phyra76437;rank=3 scaffold_18 . exon 158490 158830 . + . ID=Phyra76437.3;Parent=Phyra76437;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_18 . CDS 158910 159014 . + 0 ID=Phyra76437;Parent=Phyra76437;rank=4 scaffold_18 . exon 158910 159014 . + . ID=Phyra76437.4;Parent=Phyra76437;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_18 . CDS 159085 159427 . + 0 ID=Phyra76437;Parent=Phyra76437;rank=5 scaffold_18 . exon 159085 159427 . + . ID=Phyra76437.5;Parent=Phyra76437;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 ensembl protein_coding_gene 164289 168026 . - . ID=Phyra43251;biotype=protein_coding;external_name=gwEuk.18.214.1;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 164289 168026 . - . ID=Phyra43251;Parent=Phyra43251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 164289 168026 . - 0 ID=Phyra43251;Parent=Phyra43251;rank=1 scaffold_18 . exon 164289 168026 . - . ID=Phyra43251.1;Parent=Phyra43251;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 159786 161588 . - . ID=Phyra71418;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000009;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 159786 161588 . - . ID=Phyra71418;Parent=Phyra71418;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 159786 161588 . - 0 ID=Phyra71418;Parent=Phyra71418;rank=1 scaffold_18 . exon 159786 161588 . - . ID=Phyra71418.1;Parent=Phyra71418;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 168140 172241 . - . ID=Phyra76441;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000072;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 168140 172241 . - . ID=Phyra76441;Parent=Phyra76441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 168140 172241 . - 0 ID=Phyra76441;Parent=Phyra76441;rank=1 scaffold_18 . exon 168140 172241 . - . ID=Phyra76441.1;Parent=Phyra76441;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . repeat_region 172502 172510 . ? . description=dust scaffold_18 . repeat_region 172687 178625 . ? . description=dust scaffold_18 . biological_region 181479 181479 0.999 - . logic_name=eponine scaffold_18 . biological_region 181532 181536 0.999 + . logic_name=eponine scaffold_18 . repeat_region 186762 186842 . ? . description=trf scaffold_18 . biological_region 187834 187837 0.999 - . logic_name=eponine scaffold_18 . biological_region 187855 187859 0.999 - . logic_name=eponine scaffold_18 . biological_region 187888 187892 0.999 + . logic_name=eponine scaffold_18 . biological_region 187912 187913 0.999 + . logic_name=eponine scaffold_18 . biological_region 188072 188079 0.999 - . logic_name=eponine scaffold_18 . biological_region 188096 188096 0.999 - . logic_name=eponine scaffold_18 . biological_region 188760 188763 0.999 + . logic_name=eponine scaffold_18 ensembl protein_coding_gene 180429 181877 . + . ID=Phyra76442;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000073;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 180429 181877 . + . ID=Phyra76442;Parent=Phyra76442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 180429 181877 . + 0 ID=Phyra76442;Parent=Phyra76442;rank=1 scaffold_18 . exon 180429 181877 . + . ID=Phyra76442.1;Parent=Phyra76442;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 182051 182395 . - . ID=Phyra76443;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000074;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 182051 182395 . - . ID=Phyra76443;Parent=Phyra76443;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 182051 182395 . - 0 ID=Phyra76443;Parent=Phyra76443;rank=1 scaffold_18 . exon 182051 182395 . - . ID=Phyra76443.1;Parent=Phyra76443;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 182705 183688 . - . ID=Phyra76444;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000075;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 182705 183688 . - . ID=Phyra76444;Parent=Phyra76444;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 182705 183688 . - 0 ID=Phyra76444;Parent=Phyra76444;rank=1 scaffold_18 . exon 182705 183688 . - . ID=Phyra76444.1;Parent=Phyra76444;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 185883 188039 . - . ID=Phyra76445;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000076;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 185883 188039 . - . ID=Phyra76445;Parent=Phyra76445;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 185883 188039 . - 0 ID=Phyra76445;Parent=Phyra76445;rank=1 scaffold_18 . exon 185883 188039 . - . ID=Phyra76445.1;Parent=Phyra76445;constitutive=1;rank=1 scaffold_18 . repeat_region 193638 193646 . ? . description=dust scaffold_18 . repeat_region 197359 197367 . ? . description=dust scaffold_18 . repeat_region 198587 198634 . ? . description=dust scaffold_18 ensembl protein_coding_gene 189043 189952 . + . ID=Phyra76446;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000077;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 189043 189952 . + . ID=Phyra76446;Parent=Phyra76446;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 189043 189690 . + 0 ID=Phyra76446;Parent=Phyra76446;rank=1 scaffold_18 . exon 189043 189690 . + . ID=Phyra76446.1;Parent=Phyra76446;constitutive=1;rank=1 scaffold_18 . CDS 189749 189820 . + 0 ID=Phyra76446;Parent=Phyra76446;rank=2 scaffold_18 . exon 189749 189820 . + . ID=Phyra76446.2;Parent=Phyra76446;constitutive=1;rank=2 scaffold_18 . CDS 189887 189952 . + 0 ID=Phyra76446;Parent=Phyra76446;rank=3 scaffold_18 . exon 189887 189952 . + . ID=Phyra76446.3;Parent=Phyra76446;constitutive=1;rank=3 scaffold_18 ensembl protein_coding_gene 191528 192264 . - . ID=Phyra76447;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000078;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 191528 192264 . - . ID=Phyra76447;Parent=Phyra76447;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 191528 191962 . - 0 ID=Phyra76447;Parent=Phyra76447;rank=3 scaffold_18 . exon 191528 191962 . - . ID=Phyra76447.3;Parent=Phyra76447;constitutive=1;rank=3 scaffold_18 . CDS 192078 192197 . - 0 ID=Phyra76447;Parent=Phyra76447;rank=2 scaffold_18 . exon 192078 192197 . - . ID=Phyra76447.2;Parent=Phyra76447;constitutive=1;rank=2 scaffold_18 . CDS 192250 192264 . - 0 ID=Phyra76447;Parent=Phyra76447;rank=1 scaffold_18 . exon 192250 192264 . - . ID=Phyra76447.1;Parent=Phyra76447;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 195946 196449 . + . ID=Phyra76448;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000079;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 195946 196449 . + . ID=Phyra76448;Parent=Phyra76448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 195946 196449 . + 0 ID=Phyra76448;Parent=Phyra76448;rank=1 scaffold_18 . exon 195946 196449 . + . ID=Phyra76448.1;Parent=Phyra76448;constitutive=1;rank=1 scaffold_18 . biological_region 203256 203262 0.999 - . logic_name=eponine scaffold_18 . repeat_region 203885 203927 . ? . description=trf scaffold_18 . repeat_region 208819 208883 . ? . description=trf scaffold_18 ensembl protein_coding_gene 200615 201735 . - . ID=Phyra76449;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000080;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 200615 201735 . - . ID=Phyra76449;Parent=Phyra76449;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 200615 200676 . - 0 ID=Phyra76449;Parent=Phyra76449;rank=2 scaffold_18 . exon 200615 200676 . - . ID=Phyra76449.2;Parent=Phyra76449;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 200919 201735 . - 0 ID=Phyra76449;Parent=Phyra76449;rank=1 scaffold_18 . exon 200919 201735 . - . ID=Phyra76449.1;Parent=Phyra76449;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . repeat_region 211478 211527 . ? . description=dust scaffold_18 . repeat_region 213349 213656 . - . description=GypsyPi-1c_LTR scaffold_18 . repeat_region 213657 214086 . - . description=GypsyPi-1c_I-int scaffold_18 . repeat_region 214224 214273 . ? . description=dust scaffold_18 . repeat_region 218011 218037 . ? . description=dust scaffold_18 ensembl protein_coding_gene 214780 216126 . + . ID=Phyra76450;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000081;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 214780 216126 . + . ID=Phyra76450;Parent=Phyra76450;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 214780 216126 . + 0 ID=Phyra76450;Parent=Phyra76450;rank=1 scaffold_18 . exon 214780 216126 . + . ID=Phyra76450.1;Parent=Phyra76450;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 216370 218079 . - . ID=Phyra76451;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000082;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 216370 218079 . - . ID=Phyra76451;Parent=Phyra76451;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 216370 218079 . - 0 ID=Phyra76451;Parent=Phyra76451;rank=1 scaffold_18 . exon 216370 218079 . - . ID=Phyra76451.1;Parent=Phyra76451;constitutive=1;rank=1 scaffold_18 . biological_region 222410 222412 0.999 + . logic_name=eponine scaffold_18 . biological_region 224956 224957 0.999 + . logic_name=eponine scaffold_18 . repeat_region 225948 226028 . ? . description=trf scaffold_18 ensembl protein_coding_gene 223161 225176 . - . ID=Phyra76453;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000084;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 223161 225176 . - . ID=Phyra76453;Parent=Phyra76453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 223161 225176 . - 0 ID=Phyra76453;Parent=Phyra76453;rank=1 scaffold_18 . exon 223161 225176 . - . ID=Phyra76453.1;Parent=Phyra76453;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 221278 223061 . + . ID=Phyra94483;biotype=protein_coding;external_name=C_scaffold_18000025;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 221278 223061 . + . ID=Phyra94483;Parent=Phyra94483;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 221278 221331 . + 0 ID=Phyra94483;Parent=Phyra94483;rank=1 scaffold_18 . exon 221278 221331 . + . ID=Phyra94483.1;Parent=Phyra94483;constitutive=1;rank=1 scaffold_18 . CDS 221364 221457 . + 0 ID=Phyra94483;Parent=Phyra94483;rank=2 scaffold_18 . exon 221364 221457 . + . ID=Phyra94483.2;Parent=Phyra94483;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . CDS 221854 222857 . + 0 ID=Phyra94483;Parent=Phyra94483;rank=3 scaffold_18 . exon 221854 222857 . + . ID=Phyra94483.3;Parent=Phyra94483;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 222969 222995 . + 0 ID=Phyra94483;Parent=Phyra94483;rank=4 scaffold_18 . exon 222969 222995 . + . ID=Phyra94483.4;Parent=Phyra94483;constitutive=1;rank=4 scaffold_18 . CDS 223029 223061 . + 0 ID=Phyra94483;Parent=Phyra94483;rank=5 scaffold_18 . exon 223029 223061 . + . ID=Phyra94483.5;Parent=Phyra94483;constitutive=1;rank=5 scaffold_18 ensembl protein_coding_gene 226082 231222 . + . ID=Phyra94485;biotype=protein_coding;external_name=C_scaffold_18000027;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 226082 231222 . + . ID=Phyra94485;Parent=Phyra94485;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 226082 226171 . + 0 ID=Phyra94485;Parent=Phyra94485;rank=1 scaffold_18 . exon 226082 226171 . + . ID=Phyra94485.1;Parent=Phyra94485;constitutive=1;rank=1 scaffold_18 . CDS 226226 226610 . + 0 ID=Phyra94485;Parent=Phyra94485;rank=2 scaffold_18 . exon 226226 226610 . + . ID=Phyra94485.2;Parent=Phyra94485;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . CDS 226764 227391 . + 0 ID=Phyra94485;Parent=Phyra94485;rank=3 scaffold_18 . exon 226764 227391 . + . ID=Phyra94485.3;Parent=Phyra94485;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_18 . CDS 227893 227964 . + 0 ID=Phyra94485;Parent=Phyra94485;rank=4 scaffold_18 . exon 227893 227964 . + . ID=Phyra94485.4;Parent=Phyra94485;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_18 . CDS 228154 228271 . + 0 ID=Phyra94485;Parent=Phyra94485;rank=5 scaffold_18 . exon 228154 228271 . + . ID=Phyra94485.5;Parent=Phyra94485;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 . CDS 228314 228460 . + 0 ID=Phyra94485;Parent=Phyra94485;rank=6 scaffold_18 . exon 228314 228460 . + . ID=Phyra94485.6;Parent=Phyra94485;constitutive=1;rank=6 scaffold_18 . CDS 228648 228851 . + 0 ID=Phyra94485;Parent=Phyra94485;rank=7 scaffold_18 . exon 228648 228851 . + . ID=Phyra94485.7;Parent=Phyra94485;constitutive=1;rank=7 scaffold_18 . CDS 229322 229701 . + 0 ID=Phyra94485;Parent=Phyra94485;rank=8 scaffold_18 . CDS 230214 230439 . + 0 ID=Phyra94485;Parent=Phyra94485;rank=9 scaffold_18 . CDS 230890 231222 . + 0 ID=Phyra94485;Parent=Phyra94485;rank=10 scaffold_18 . repeat_region 238470 238480 . ? . description=dust scaffold_18 ensembl protein_coding_gene 231617 232171 . - . ID=Phyra76455;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000086;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 231617 232171 . - . ID=Phyra76455;Parent=Phyra76455;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 231617 232171 . - 0 ID=Phyra76455;Parent=Phyra76455;rank=1 scaffold_18 . exon 231617 232171 . - . ID=Phyra76455.1;Parent=Phyra76455;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 235206 236621 . - . ID=Phyra76456;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000087;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 235206 236621 . - . ID=Phyra76456;Parent=Phyra76456;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 235206 236621 . - 0 ID=Phyra76456;Parent=Phyra76456;rank=1 scaffold_18 . exon 235206 236621 . - . ID=Phyra76456.1;Parent=Phyra76456;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 237908 238891 . + . ID=Phyra76457;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000088;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 237908 238891 . + . ID=Phyra76457;Parent=Phyra76457;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 237908 237967 . + 0 ID=Phyra76457;Parent=Phyra76457;rank=1 scaffold_18 . exon 237908 237967 . + . ID=Phyra76457.1;Parent=Phyra76457;constitutive=1;rank=1 scaffold_18 . CDS 238044 238178 . + 0 ID=Phyra76457;Parent=Phyra76457;rank=2 scaffold_18 . exon 238044 238178 . + . ID=Phyra76457.2;Parent=Phyra76457;constitutive=1;rank=2 scaffold_18 . CDS 238358 238891 . + 0 ID=Phyra76457;Parent=Phyra76457;rank=3 scaffold_18 . exon 238358 238891 . + . ID=Phyra76457.3;Parent=Phyra76457;constitutive=1;rank=3 scaffold_18 . exon 229322 229701 . + . ID=Phyra94485.8;Parent=Phyra94485;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_18 . exon 230214 230439 . + . ID=Phyra94485.9;Parent=Phyra94485;constitutive=1;ensembl_phase=2;rank=9 scaffold_18 . exon 230890 231222 . + . ID=Phyra94485.10;Parent=Phyra94485;constitutive=1;rank=10 scaffold_18 . repeat_region 243823 243866 . ? . description=trf scaffold_18 . repeat_region 243823 243866 . ? . description=trf scaffold_18 . biological_region 244315 244317 0.999 - . logic_name=eponine scaffold_18 . biological_region 244397 244399 0.999 - . logic_name=eponine scaffold_18 . biological_region 244717 244721 0.999 - . logic_name=eponine scaffold_18 . biological_region 244916 244918 0.999 + . logic_name=eponine scaffold_18 . biological_region 245026 245029 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 243291 246069 . + . ID=Phyra76458;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000089;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 243291 246069 . + . ID=Phyra76458;Parent=Phyra76458;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 243291 243379 . + 0 ID=Phyra76458;Parent=Phyra76458;rank=1 scaffold_18 . exon 243291 243379 . + . ID=Phyra76458.1;Parent=Phyra76458;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 243401 243572 . + 0 ID=Phyra76458;Parent=Phyra76458;rank=2 scaffold_18 . exon 243401 243572 . + . ID=Phyra76458.2;Parent=Phyra76458;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 243882 244113 . + 0 ID=Phyra76458;Parent=Phyra76458;rank=3 scaffold_18 . exon 243882 244113 . + . ID=Phyra76458.3;Parent=Phyra76458;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_18 . CDS 244208 246069 . + 0 ID=Phyra76458;Parent=Phyra76458;rank=4 scaffold_18 . exon 244208 246069 . + . ID=Phyra76458.4;Parent=Phyra76458;constitutive=1;ensembl_phase=1;rank=4 scaffold_18 ensembl protein_coding_gene 247034 249010 . + . ID=Phyra76459;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000090;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 247034 249010 . + . ID=Phyra76459;Parent=Phyra76459;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 247034 249010 . + 0 ID=Phyra76459;Parent=Phyra76459;rank=1 scaffold_18 . exon 247034 249010 . + . ID=Phyra76459.1;Parent=Phyra76459;constitutive=1;rank=1 scaffold_18 . repeat_region 253734 253781 . ? . description=dust scaffold_18 . repeat_region 256501 256521 . ? . description=dust scaffold_18 . repeat_region 256602 256618 . ? . description=dust scaffold_18 ensembl protein_coding_gene 253525 254361 . + . ID=Phyra43043;biotype=protein_coding;external_name=gwEuk.18.6.1;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 253525 254361 . + . ID=Phyra43043;Parent=Phyra43043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 253525 253734 . + 0 ID=Phyra43043;Parent=Phyra43043;rank=1 scaffold_18 . exon 253525 253734 . + . ID=Phyra43043.1;Parent=Phyra43043;constitutive=1;rank=1 scaffold_18 . CDS 253819 254156 . + 0 ID=Phyra43043;Parent=Phyra43043;rank=2 scaffold_18 . exon 253819 254156 . + . ID=Phyra43043.2;Parent=Phyra43043;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_18 . CDS 254220 254361 . + 0 ID=Phyra43043;Parent=Phyra43043;rank=3 scaffold_18 . exon 254220 254361 . + . ID=Phyra43043.3;Parent=Phyra43043;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 ensembl protein_coding_gene 249087 249773 . - . ID=Phyra76460;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000091;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 249087 249773 . - . ID=Phyra76460;Parent=Phyra76460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 249087 249773 . - 0 ID=Phyra76460;Parent=Phyra76460;rank=1 scaffold_18 . exon 249087 249773 . - . ID=Phyra76460.1;Parent=Phyra76460;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 250351 251746 . + . ID=Phyra76461;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000092;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 250351 251746 . + . ID=Phyra76461;Parent=Phyra76461;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 250351 250397 . + 0 ID=Phyra76461;Parent=Phyra76461;rank=1 scaffold_18 . exon 250351 250397 . + . ID=Phyra76461.1;Parent=Phyra76461;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 250458 250535 . + 0 ID=Phyra76461;Parent=Phyra76461;rank=2 scaffold_18 . exon 250458 250535 . + . ID=Phyra76461.2;Parent=Phyra76461;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_18 . CDS 250613 250791 . + 0 ID=Phyra76461;Parent=Phyra76461;rank=3 scaffold_18 . exon 250613 250791 . + . ID=Phyra76461.3;Parent=Phyra76461;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 250871 250931 . + 0 ID=Phyra76461;Parent=Phyra76461;rank=4 scaffold_18 . exon 250871 250931 . + . ID=Phyra76461.4;Parent=Phyra76461;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_18 . CDS 251000 251215 . + 0 ID=Phyra76461;Parent=Phyra76461;rank=5 scaffold_18 . exon 251000 251215 . + . ID=Phyra76461.5;Parent=Phyra76461;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_18 . CDS 251296 251440 . + 0 ID=Phyra76461;Parent=Phyra76461;rank=6 scaffold_18 . exon 251296 251440 . + . ID=Phyra76461.6;Parent=Phyra76461;constitutive=1;ensembl_phase=2;rank=6 scaffold_18 . CDS 251537 251746 . + 0 ID=Phyra76461;Parent=Phyra76461;rank=7 scaffold_18 . exon 251537 251746 . + . ID=Phyra76461.7;Parent=Phyra76461;constitutive=1;rank=7 scaffold_18 ensembl protein_coding_gene 257603 260212 . + . ID=Phyra76463;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000094;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 257603 260212 . + . ID=Phyra76463;Parent=Phyra76463;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 257603 258301 . + 0 ID=Phyra76463;Parent=Phyra76463;rank=1 scaffold_18 . exon 257603 258301 . + . ID=Phyra76463.1;Parent=Phyra76463;constitutive=1;rank=1 scaffold_18 . CDS 258495 258560 . + 0 ID=Phyra76463;Parent=Phyra76463;rank=2 scaffold_18 . exon 258495 258560 . + . ID=Phyra76463.2;Parent=Phyra76463;constitutive=1;rank=2 scaffold_18 . CDS 259109 260212 . + 0 ID=Phyra76463;Parent=Phyra76463;rank=3 scaffold_18 . biological_region 262698 262700 0.999 + . logic_name=eponine scaffold_18 . biological_region 265175 265176 0.999 + . logic_name=eponine scaffold_18 . biological_region 265260 265266 0.999 - . logic_name=eponine scaffold_18 . biological_region 265627 265632 0.999 + . logic_name=eponine scaffold_18 . biological_region 267503 267504 0.999 + . logic_name=eponine scaffold_18 . biological_region 267857 267859 0.999 - . logic_name=eponine scaffold_18 . biological_region 267873 267883 0.999 + . logic_name=eponine scaffold_18 . biological_region 268193 268196 0.999 - . logic_name=eponine scaffold_18 . exon 259109 260212 . + . ID=Phyra76463.3;Parent=Phyra76463;constitutive=1;rank=3 scaffold_18 ensembl protein_coding_gene 262716 265358 . - . ID=Phyra76465;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000096;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 262716 265358 . - . ID=Phyra76465;Parent=Phyra76465;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 262716 265358 . - 0 ID=Phyra76465;Parent=Phyra76465;rank=1 scaffold_18 . exon 262716 265358 . - . ID=Phyra76465.1;Parent=Phyra76465;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 266885 268128 . - . ID=Phyra76466;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000097;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 266885 268128 . - . ID=Phyra76466;Parent=Phyra76466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 266885 267651 . - 0 ID=Phyra76466;Parent=Phyra76466;rank=2 scaffold_18 . exon 266885 267651 . - . ID=Phyra76466.2;Parent=Phyra76466;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 267765 268128 . - 0 ID=Phyra76466;Parent=Phyra76466;rank=1 scaffold_18 . exon 267765 268128 . - . ID=Phyra76466.1;Parent=Phyra76466;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 260273 261827 . - . ID=Phyra94488;biotype=protein_coding;external_name=C_scaffold_18000030;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 260273 261827 . - . ID=Phyra94488;Parent=Phyra94488;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 260273 260922 . - 0 ID=Phyra94488;Parent=Phyra94488;rank=3 scaffold_18 . exon 260273 260922 . - . ID=Phyra94488.3;Parent=Phyra94488;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 260962 261563 . - 0 ID=Phyra94488;Parent=Phyra94488;rank=2 scaffold_18 . exon 260962 261563 . - . ID=Phyra94488.2;Parent=Phyra94488;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 261634 261827 . - 0 ID=Phyra94488;Parent=Phyra94488;rank=1 scaffold_18 . exon 261634 261827 . - . ID=Phyra94488.1;Parent=Phyra94488;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 ensembl protein_coding_gene 269201 270954 . + . ID=Phyra76467;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000098;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 269201 270954 . + . ID=Phyra76467;Parent=Phyra76467;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 269201 269306 . + 0 ID=Phyra76467;Parent=Phyra76467;rank=1 scaffold_18 . exon 269201 269306 . + . ID=Phyra76467.1;Parent=Phyra76467;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 269907 270315 . + 0 ID=Phyra76467;Parent=Phyra76467;rank=2 scaffold_18 . exon 269907 270315 . + . ID=Phyra76467.2;Parent=Phyra76467;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_18 . CDS 270370 270423 . + 0 ID=Phyra76467;Parent=Phyra76467;rank=3 scaffold_18 . exon 270370 270423 . + . ID=Phyra76467.3;Parent=Phyra76467;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_18 . CDS 270483 270954 . + 0 ID=Phyra76467;Parent=Phyra76467;rank=4 scaffold_18 . exon 270483 270954 . + . ID=Phyra76467.4;Parent=Phyra76467;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 ensembl protein_coding_gene 271599 273350 . + . ID=Phyra76468;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000099;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 271599 273350 . + . ID=Phyra76468;Parent=Phyra76468;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 271599 273350 . + 0 ID=Phyra76468;Parent=Phyra76468;rank=1 scaffold_18 . exon 271599 273350 . + . ID=Phyra76468.1;Parent=Phyra76468;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 274845 275218 . + . ID=Phyra94490;biotype=protein_coding;external_name=C_scaffold_18000032;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 274845 275218 . + . ID=Phyra94490;Parent=Phyra94490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 274845 274874 . + 0 ID=Phyra94490;Parent=Phyra94490;rank=1 scaffold_18 . exon 274845 274874 . + . ID=Phyra94490.1;Parent=Phyra94490;constitutive=1;rank=1 scaffold_18 . CDS 274940 275107 . + 0 ID=Phyra94490;Parent=Phyra94490;rank=2 scaffold_18 . exon 274940 275107 . + . ID=Phyra94490.2;Parent=Phyra94490;constitutive=1;rank=2 scaffold_18 . CDS 275192 275218 . + 0 ID=Phyra94490;Parent=Phyra94490;rank=3 scaffold_18 . exon 275192 275218 . + . ID=Phyra94490.3;Parent=Phyra94490;constitutive=1;rank=3 scaffold_18 ensembl protein_coding_gene 277880 282632 . + . ID=Phyra94491;biotype=protein_coding;external_name=C_scaffold_18000033;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 277880 282632 . + . ID=Phyra94491;Parent=Phyra94491;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 277880 277961 . + 0 ID=Phyra94491;Parent=Phyra94491;rank=1 scaffold_18 . exon 277880 277961 . + . ID=Phyra94491.1;Parent=Phyra94491;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 278031 278443 . + 0 ID=Phyra94491;Parent=Phyra94491;rank=2 scaffold_18 . exon 278031 278443 . + . ID=Phyra94491.2;Parent=Phyra94491;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 278522 278591 . + 0 ID=Phyra94491;Parent=Phyra94491;rank=3 scaffold_18 . exon 278522 278591 . + . ID=Phyra94491.3;Parent=Phyra94491;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_18 . CDS 278664 279627 . + 0 ID=Phyra94491;Parent=Phyra94491;rank=4 scaffold_18 . CDS 280105 280546 . + 0 ID=Phyra94491;Parent=Phyra94491;rank=5 scaffold_18 . CDS 280637 282355 . + 0 ID=Phyra94491;Parent=Phyra94491;rank=6 scaffold_18 . CDS 282435 282632 . + 0 ID=Phyra94491;Parent=Phyra94491;rank=7 scaffold_18 . biological_region 278724 278726 0.999 - . logic_name=eponine scaffold_18 . repeat_region 284174 284228 . ? . description=trf scaffold_18 . repeat_region 285033 285506 . ? . description=trf scaffold_18 . repeat_region 285546 285567 . ? . description=trf scaffold_18 . repeat_region 286991 287012 . ? . description=trf scaffold_18 . repeat_region 287052 287525 . ? . description=trf scaffold_18 . repeat_region 288330 288384 . ? . description=trf scaffold_18 ensembl protein_coding_gene 284027 285616 . - . ID=Phyra76470;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000101;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 284027 285616 . - . ID=Phyra76470;Parent=Phyra76470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 284027 285616 . - 0 ID=Phyra76470;Parent=Phyra76470;rank=1 scaffold_18 . exon 284027 285616 . - . ID=Phyra76470.1;Parent=Phyra76470;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 286942 288531 . + . ID=Phyra76471;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000102;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 286942 288531 . + . ID=Phyra76471;Parent=Phyra76471;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 286942 288531 . + 0 ID=Phyra76471;Parent=Phyra76471;rank=1 scaffold_18 . exon 286942 288531 . + . ID=Phyra76471.1;Parent=Phyra76471;constitutive=1;rank=1 scaffold_18 . exon 278664 279627 . + . ID=Phyra94491.4;Parent=Phyra94491;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_18 . exon 280105 280546 . + . ID=Phyra94491.5;Parent=Phyra94491;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 . exon 280637 282355 . + . ID=Phyra94491.6;Parent=Phyra94491;constitutive=1;rank=6 scaffold_18 . exon 282435 282632 . + . ID=Phyra94491.7;Parent=Phyra94491;constitutive=1;rank=7 scaffold_18 ensembl protein_coding_gene 289992 290577 . - . ID=Phyra43055;biotype=protein_coding;external_name=gwEuk.18.18.1;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 289992 290577 . - . ID=Phyra43055;Parent=Phyra43055;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 289992 290123 . - 0 ID=Phyra43055;Parent=Phyra43055;rank=2 scaffold_18 . exon 289992 290123 . - . ID=Phyra43055.2;Parent=Phyra43055;constitutive=1;rank=2 scaffold_18 . CDS 290203 290577 . - 0 ID=Phyra43055;Parent=Phyra43055;rank=1 scaffold_18 . exon 290203 290577 . - . ID=Phyra43055.1;Parent=Phyra43055;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 294711 295678 . - . ID=Phyra76473;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000104;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 294711 295678 . - . ID=Phyra76473;Parent=Phyra76473;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 294711 294722 . - 0 ID=Phyra76473;Parent=Phyra76473;rank=2 scaffold_18 . exon 294711 294722 . - . ID=Phyra76473.2;Parent=Phyra76473;constitutive=1;rank=2 scaffold_18 . CDS 294755 295678 . - 0 ID=Phyra76473;Parent=Phyra76473;rank=1 scaffold_18 . exon 294755 295678 . - . ID=Phyra76473.1;Parent=Phyra76473;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 297998 298757 . - . ID=Phyra76474;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000105;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 297998 298757 . - . ID=Phyra76474;Parent=Phyra76474;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 297998 298003 . - 0 ID=Phyra76474;Parent=Phyra76474;rank=3 scaffold_18 . exon 297998 298003 . - . ID=Phyra76474.3;Parent=Phyra76474;constitutive=1;rank=3 scaffold_18 . CDS 298034 298447 . - 0 ID=Phyra76474;Parent=Phyra76474;rank=2 scaffold_18 . exon 298034 298447 . - . ID=Phyra76474.2;Parent=Phyra76474;constitutive=1;rank=2 scaffold_18 . CDS 298506 298757 . - 0 ID=Phyra76474;Parent=Phyra76474;rank=1 scaffold_18 ensembl protein_coding_gene 291746 294352 . + . ID=Phyra94493;biotype=protein_coding;external_name=C_scaffold_18000035;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 291746 294352 . + . ID=Phyra94493;Parent=Phyra94493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 291746 292186 . + 0 ID=Phyra94493;Parent=Phyra94493;rank=1 scaffold_18 . exon 291746 292186 . + . ID=Phyra94493.1;Parent=Phyra94493;constitutive=1;rank=1 scaffold_18 . CDS 292254 292385 . + 0 ID=Phyra94493;Parent=Phyra94493;rank=2 scaffold_18 . exon 292254 292385 . + . ID=Phyra94493.2;Parent=Phyra94493;constitutive=1;rank=2 scaffold_18 . CDS 292461 292937 . + 0 ID=Phyra94493;Parent=Phyra94493;rank=3 scaffold_18 . exon 292461 292937 . + . ID=Phyra94493.3;Parent=Phyra94493;constitutive=1;rank=3 scaffold_18 . CDS 293360 294352 . + 0 ID=Phyra94493;Parent=Phyra94493;rank=4 scaffold_18 . exon 293360 294352 . + . ID=Phyra94493.4;Parent=Phyra94493;constitutive=1;rank=4 scaffold_18 . biological_region 299206 299208 0.999 + . logic_name=eponine scaffold_18 . biological_region 299248 299250 0.999 - . logic_name=eponine scaffold_18 . exon 298506 298757 . - . ID=Phyra76474.1;Parent=Phyra76474;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 298913 308410 . + . ID=Phyra94496;biotype=protein_coding;external_name=C_scaffold_18000038;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 298913 308410 . + . ID=Phyra94496;Parent=Phyra94496;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 298913 300361 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=1 scaffold_18 . exon 298913 300361 . + . ID=Phyra94496.1;Parent=Phyra94496;constitutive=1;rank=1 scaffold_18 . CDS 300764 300832 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=2 scaffold_18 . exon 300764 300832 . + . ID=Phyra94496.2;Parent=Phyra94496;constitutive=1;rank=2 scaffold_18 . CDS 300872 301123 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=3 scaffold_18 . exon 300872 301123 . + . ID=Phyra94496.3;Parent=Phyra94496;constitutive=1;rank=3 scaffold_18 . CDS 301282 301321 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=4 scaffold_18 . exon 301282 301321 . + . ID=Phyra94496.4;Parent=Phyra94496;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_18 . CDS 301413 301650 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=5 scaffold_18 . exon 301413 301650 . + . ID=Phyra94496.5;Parent=Phyra94496;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_18 . CDS 302443 302513 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=6 scaffold_18 . exon 302443 302513 . + . ID=Phyra94496.6;Parent=Phyra94496;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_18 . CDS 302646 303110 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=7 scaffold_18 . exon 302646 303110 . + . ID=Phyra94496.7;Parent=Phyra94496;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_18 . CDS 303246 303414 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=8 scaffold_18 . exon 303246 303414 . + . ID=Phyra94496.8;Parent=Phyra94496;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_18 . CDS 303703 304169 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=9 scaffold_18 . exon 303703 304169 . + . ID=Phyra94496.9;Parent=Phyra94496;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_18 . CDS 304452 304682 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=10 scaffold_18 . exon 304452 304682 . + . ID=Phyra94496.10;Parent=Phyra94496;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_18 . CDS 304776 304931 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=11 scaffold_18 . exon 304776 304931 . + . ID=Phyra94496.11;Parent=Phyra94496;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_18 . CDS 305019 305133 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=12 scaffold_18 . exon 305019 305133 . + . ID=Phyra94496.12;Parent=Phyra94496;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_18 . CDS 305266 305365 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=13 scaffold_18 . exon 305266 305365 . + . ID=Phyra94496.13;Parent=Phyra94496;constitutive=1;ensembl_phase=2;rank=13 scaffold_18 . CDS 306170 306286 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=14 scaffold_18 . exon 306170 306286 . + . ID=Phyra94496.14;Parent=Phyra94496;constitutive=1;rank=14 scaffold_18 . CDS 306920 307132 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=15 scaffold_18 . exon 306920 307132 . + . ID=Phyra94496.15;Parent=Phyra94496;constitutive=1;rank=15 scaffold_18 . CDS 307232 307366 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=16 scaffold_18 . exon 307232 307366 . + . ID=Phyra94496.16;Parent=Phyra94496;constitutive=1;rank=16 scaffold_18 . CDS 307445 308114 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=17 scaffold_18 . exon 307445 308114 . + . ID=Phyra94496.17;Parent=Phyra94496;constitutive=1;ensembl_end_phase=1;rank=17 scaffold_18 . CDS 308136 308410 . + 0 ID=Phyra94496;Parent=Phyra94496;rank=18 scaffold_18 . exon 308136 308410 . + . ID=Phyra94496.18;Parent=Phyra94496;constitutive=1;ensembl_phase=1;rank=18 scaffold_18 ensembl protein_coding_gene 313291 314504 . - . ID=Phyra76476;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000107;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 313291 314504 . - . ID=Phyra76476;Parent=Phyra76476;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 313291 314303 . - 0 ID=Phyra76476;Parent=Phyra76476;rank=2 scaffold_18 . exon 313291 314303 . - . ID=Phyra76476.2;Parent=Phyra76476;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 314378 314504 . - 0 ID=Phyra76476;Parent=Phyra76476;rank=1 scaffold_18 . exon 314378 314504 . - . ID=Phyra76476.1;Parent=Phyra76476;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 314739 315381 . + . ID=Phyra76477;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000108;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 314739 315381 . + . ID=Phyra76477;Parent=Phyra76477;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 314739 314921 . + 0 ID=Phyra76477;Parent=Phyra76477;rank=1 scaffold_18 . exon 314739 314921 . + . ID=Phyra76477.1;Parent=Phyra76477;constitutive=1;rank=1 scaffold_18 . CDS 315094 315095 . + 0 ID=Phyra76477;Parent=Phyra76477;rank=2 scaffold_18 . exon 315094 315095 . + . ID=Phyra76477.2;Parent=Phyra76477;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_18 . CDS 315126 315381 . + 0 ID=Phyra76477;Parent=Phyra76477;rank=3 scaffold_18 . exon 315126 315381 . + . ID=Phyra76477.3;Parent=Phyra76477;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 ensembl protein_coding_gene 316144 316862 . + . ID=Phyra94499;biotype=protein_coding;external_name=C_scaffold_18000041;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 316144 316862 . + . ID=Phyra94499;Parent=Phyra94499;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 316144 316245 . + 0 ID=Phyra94499;Parent=Phyra94499;rank=1 scaffold_18 . exon 316144 316245 . + . ID=Phyra94499.1;Parent=Phyra94499;constitutive=1;rank=1 scaffold_18 . CDS 316307 316348 . + 0 ID=Phyra94499;Parent=Phyra94499;rank=2 scaffold_18 . exon 316307 316348 . + . ID=Phyra94499.2;Parent=Phyra94499;constitutive=1;rank=2 scaffold_18 . CDS 316411 316611 . + 0 ID=Phyra94499;Parent=Phyra94499;rank=3 scaffold_18 . exon 316411 316611 . + . ID=Phyra94499.3;Parent=Phyra94499;constitutive=1;rank=3 scaffold_18 . CDS 316791 316862 . + 0 ID=Phyra94499;Parent=Phyra94499;rank=4 scaffold_18 . exon 316791 316862 . + . ID=Phyra94499.4;Parent=Phyra94499;constitutive=1;rank=4 scaffold_18 ensembl protein_coding_gene 316953 317633 . - . ID=Phyra94500;biotype=protein_coding;external_name=C_scaffold_18000042;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 316953 317633 . - . ID=Phyra94500;Parent=Phyra94500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 316953 317204 . - 0 ID=Phyra94500;Parent=Phyra94500;rank=3 scaffold_18 . exon 316953 317204 . - . ID=Phyra94500.3;Parent=Phyra94500;constitutive=1;rank=3 scaffold_18 . CDS 317280 317354 . - 0 ID=Phyra94500;Parent=Phyra94500;rank=2 scaffold_18 . exon 317280 317354 . - . ID=Phyra94500.2;Parent=Phyra94500;constitutive=1;rank=2 scaffold_18 . CDS 317445 317633 . - 0 ID=Phyra94500;Parent=Phyra94500;rank=1 scaffold_18 . exon 317445 317633 . - . ID=Phyra94500.1;Parent=Phyra94500;constitutive=1;rank=1 scaffold_18 . biological_region 322287 322291 0.999 + . logic_name=eponine scaffold_18 . repeat_region 323615 323677 . ? . description=dust scaffold_18 . repeat_region 323637 323682 . ? . description=trf scaffold_18 . repeat_region 327431 327579 . ? . description=trf scaffold_18 . repeat_region 327953 327986 . ? . description=trf scaffold_18 ensembl protein_coding_gene 321229 322449 . - . ID=Phyra76478;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000109;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 321229 322449 . - . ID=Phyra76478;Parent=Phyra76478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 321229 321231 . - 0 ID=Phyra76478;Parent=Phyra76478;rank=5 scaffold_18 . exon 321229 321231 . - . ID=Phyra76478.5;Parent=Phyra76478;constitutive=1;rank=5 scaffold_18 . CDS 321364 321549 . - 0 ID=Phyra76478;Parent=Phyra76478;rank=4 scaffold_18 . exon 321364 321549 . - . ID=Phyra76478.4;Parent=Phyra76478;constitutive=1;rank=4 scaffold_18 . CDS 321610 321723 . - 0 ID=Phyra76478;Parent=Phyra76478;rank=3 scaffold_18 . exon 321610 321723 . - . ID=Phyra76478.3;Parent=Phyra76478;constitutive=1;rank=3 scaffold_18 . CDS 321792 322274 . - 0 ID=Phyra76478;Parent=Phyra76478;rank=2 scaffold_18 . exon 321792 322274 . - . ID=Phyra76478.2;Parent=Phyra76478;constitutive=1;rank=2 scaffold_18 . CDS 322357 322449 . - 0 ID=Phyra76478;Parent=Phyra76478;rank=1 scaffold_18 . exon 322357 322449 . - . ID=Phyra76478.1;Parent=Phyra76478;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 327242 329053 . - . ID=Phyra76479;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000110;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 327242 329053 . - . ID=Phyra76479;Parent=Phyra76479;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 327242 327611 . - 0 ID=Phyra76479;Parent=Phyra76479;rank=3 scaffold_18 . exon 327242 327611 . - . ID=Phyra76479.3;Parent=Phyra76479;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 327688 328801 . - 0 ID=Phyra76479;Parent=Phyra76479;rank=2 scaffold_18 . exon 327688 328801 . - . ID=Phyra76479.2;Parent=Phyra76479;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_18 . CDS 328873 329053 . - 0 ID=Phyra76479;Parent=Phyra76479;rank=1 scaffold_18 . exon 328873 329053 . - . ID=Phyra76479.1;Parent=Phyra76479;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 334195 336322 . - . ID=Phyra76480;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000111;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 334195 336322 . - . ID=Phyra76480;Parent=Phyra76480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 334195 334564 . - 0 ID=Phyra76480;Parent=Phyra76480;rank=4 scaffold_18 . exon 334195 334564 . - . ID=Phyra76480.4;Parent=Phyra76480;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 . CDS 334641 335745 . - 0 ID=Phyra76480;Parent=Phyra76480;rank=3 scaffold_18 . exon 334641 335745 . - . ID=Phyra76480.3;Parent=Phyra76480;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_18 . CDS 335817 336055 . - 0 ID=Phyra76480;Parent=Phyra76480;rank=2 scaffold_18 . exon 335817 336055 . - . ID=Phyra76480.2;Parent=Phyra76480;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 336141 336322 . - 0 ID=Phyra76480;Parent=Phyra76480;rank=1 scaffold_18 . exon 336141 336322 . - . ID=Phyra76480.1;Parent=Phyra76480;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . biological_region 342930 342934 0.999 + . logic_name=eponine scaffold_18 . biological_region 343563 343567 0.999 - . logic_name=eponine scaffold_18 . biological_region 345054 345058 0.999 - . logic_name=eponine scaffold_18 . biological_region 345132 345135 0.999 + . logic_name=eponine scaffold_18 . biological_region 345236 345236 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 338576 340809 . + . ID=Phyra76481;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000112;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 338576 340809 . + . ID=Phyra76481;Parent=Phyra76481;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 338576 339028 . + 0 ID=Phyra76481;Parent=Phyra76481;rank=1 scaffold_18 . exon 338576 339028 . + . ID=Phyra76481.1;Parent=Phyra76481;constitutive=1;rank=1 scaffold_18 . CDS 339090 339326 . + 0 ID=Phyra76481;Parent=Phyra76481;rank=2 scaffold_18 . exon 339090 339326 . + . ID=Phyra76481.2;Parent=Phyra76481;constitutive=1;rank=2 scaffold_18 . CDS 339398 339630 . + 0 ID=Phyra76481;Parent=Phyra76481;rank=3 scaffold_18 . exon 339398 339630 . + . ID=Phyra76481.3;Parent=Phyra76481;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_18 . CDS 339701 339778 . + 0 ID=Phyra76481;Parent=Phyra76481;rank=4 scaffold_18 . exon 339701 339778 . + . ID=Phyra76481.4;Parent=Phyra76481;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_18 . CDS 339842 339962 . + 0 ID=Phyra76481;Parent=Phyra76481;rank=5 scaffold_18 . exon 339842 339962 . + . ID=Phyra76481.5;Parent=Phyra76481;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 . CDS 340036 340125 . + 0 ID=Phyra76481;Parent=Phyra76481;rank=6 scaffold_18 . exon 340036 340125 . + . ID=Phyra76481.6;Parent=Phyra76481;constitutive=1;rank=6 scaffold_18 . CDS 340327 340809 . + 0 ID=Phyra76481;Parent=Phyra76481;rank=7 scaffold_18 . exon 340327 340809 . + . ID=Phyra76481.7;Parent=Phyra76481;constitutive=1;rank=7 scaffold_18 ensembl protein_coding_gene 342091 343110 . + . ID=Phyra76482;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000113;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 342091 343110 . + . ID=Phyra76482;Parent=Phyra76482;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 342091 343110 . + 0 ID=Phyra76482;Parent=Phyra76482;rank=1 scaffold_18 . exon 342091 343110 . + . ID=Phyra76482.1;Parent=Phyra76482;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 343386 344411 . - . ID=Phyra76483;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000114;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 343386 344411 . - . ID=Phyra76483;Parent=Phyra76483;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 343386 344411 . - 0 ID=Phyra76483;Parent=Phyra76483;rank=1 scaffold_18 . exon 343386 344411 . - . ID=Phyra76483.1;Parent=Phyra76483;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 344784 347063 . - . ID=Phyra76484;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000115;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 344784 347063 . - . ID=Phyra76484;Parent=Phyra76484;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 344784 347063 . - 0 ID=Phyra76484;Parent=Phyra76484;rank=1 scaffold_18 . exon 344784 347063 . - . ID=Phyra76484.1;Parent=Phyra76484;constitutive=1;rank=1 scaffold_18 . repeat_region 351127 351134 . ? . description=dust scaffold_18 . repeat_region 357093 357104 . ? . description=dust scaffold_18 ensembl protein_coding_gene 351537 352277 . + . ID=Phyra76486;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000117;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 351537 352277 . + . ID=Phyra76486;Parent=Phyra76486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 351537 352277 . + 0 ID=Phyra76486;Parent=Phyra76486;rank=1 scaffold_18 . exon 351537 352277 . + . ID=Phyra76486.1;Parent=Phyra76486;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 355272 356144 . + . ID=Phyra76487;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000118;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 355272 356144 . + . ID=Phyra76487;Parent=Phyra76487;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 355272 356144 . + 0 ID=Phyra76487;Parent=Phyra76487;rank=1 scaffold_18 . exon 355272 356144 . + . ID=Phyra76487.1;Parent=Phyra76487;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 349082 349538 . - . ID=Phyra94503;biotype=protein_coding;external_name=C_scaffold_18000045;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 349082 349538 . - . ID=Phyra94503;Parent=Phyra94503;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 349082 349129 . - 0 ID=Phyra94503;Parent=Phyra94503;rank=3 scaffold_18 . exon 349082 349129 . - . ID=Phyra94503.3;Parent=Phyra94503;constitutive=1;rank=3 scaffold_18 . CDS 349208 349333 . - 0 ID=Phyra94503;Parent=Phyra94503;rank=2 scaffold_18 . exon 349208 349333 . - . ID=Phyra94503.2;Parent=Phyra94503;constitutive=1;rank=2 scaffold_18 . CDS 349431 349538 . - 0 ID=Phyra94503;Parent=Phyra94503;rank=1 scaffold_18 . exon 349431 349538 . - . ID=Phyra94503.1;Parent=Phyra94503;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 349860 350369 . + . ID=Phyra94504;biotype=protein_coding;external_name=C_scaffold_18000046;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 349860 350369 . + . ID=Phyra94504;Parent=Phyra94504;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 349860 350369 . + 0 ID=Phyra94504;Parent=Phyra94504;rank=1 scaffold_18 . exon 349860 350369 . + . ID=Phyra94504.1;Parent=Phyra94504;constitutive=1;rank=1 scaffold_18 . biological_region 358239 358242 0.999 - . logic_name=eponine scaffold_18 . biological_region 358303 358304 0.999 - . logic_name=eponine scaffold_18 . biological_region 364048 364055 0.999 + . logic_name=eponine scaffold_18 . biological_region 364088 364089 0.999 - . logic_name=eponine scaffold_18 . biological_region 366875 366875 0.999 + . logic_name=eponine scaffold_18 . biological_region 367014 367017 0.999 - . logic_name=eponine scaffold_18 . biological_region 367069 367073 0.999 + . logic_name=eponine scaffold_18 ensembl protein_coding_gene 364113 364814 . + . ID=Phyra43059;biotype=protein_coding;external_name=gwEuk.18.22.1;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 364113 364814 . + . ID=Phyra43059;Parent=Phyra43059;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 364113 364814 . + 0 ID=Phyra43059;Parent=Phyra43059;rank=1 scaffold_18 . exon 364113 364814 . + . ID=Phyra43059.1;Parent=Phyra43059;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 365103 367281 . - . ID=Phyra76489;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000120;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 365103 367281 . - . ID=Phyra76489;Parent=Phyra76489;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 365103 365493 . - 0 ID=Phyra76489;Parent=Phyra76489;rank=5 scaffold_18 . exon 365103 365493 . - . ID=Phyra76489.5;Parent=Phyra76489;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 . CDS 365571 366199 . - 0 ID=Phyra76489;Parent=Phyra76489;rank=4 scaffold_18 . exon 365571 366199 . - . ID=Phyra76489.4;Parent=Phyra76489;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_18 . CDS 366316 366507 . - 0 ID=Phyra76489;Parent=Phyra76489;rank=3 scaffold_18 . exon 366316 366507 . - . ID=Phyra76489.3;Parent=Phyra76489;constitutive=1;rank=3 scaffold_18 . CDS 366634 367038 . - 0 ID=Phyra76489;Parent=Phyra76489;rank=2 scaffold_18 . exon 366634 367038 . - . ID=Phyra76489.2;Parent=Phyra76489;constitutive=1;rank=2 scaffold_18 . CDS 367105 367281 . - 0 ID=Phyra76489;Parent=Phyra76489;rank=1 scaffold_18 . exon 367105 367281 . - . ID=Phyra76489.1;Parent=Phyra76489;constitutive=1;rank=1 scaffold_18 . repeat_region 375314 375359 . ? . description=trf scaffold_18 . repeat_region 377707 377720 . ? . description=dust scaffold_18 ensembl protein_coding_gene 368333 370045 . + . ID=Phyra76490;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000121;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 368333 370045 . + . ID=Phyra76490;Parent=Phyra76490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 368333 370045 . + 0 ID=Phyra76490;Parent=Phyra76490;rank=1 scaffold_18 . exon 368333 370045 . + . ID=Phyra76490.1;Parent=Phyra76490;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 370739 372457 . + . ID=Phyra76491;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000122;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 370739 372457 . + . ID=Phyra76491;Parent=Phyra76491;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 370739 372457 . + 0 ID=Phyra76491;Parent=Phyra76491;rank=1 scaffold_18 . exon 370739 372457 . + . ID=Phyra76491.1;Parent=Phyra76491;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 372756 374483 . + . ID=Phyra76492;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000123;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 372756 374483 . + . ID=Phyra76492;Parent=Phyra76492;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 372756 374483 . + 0 ID=Phyra76492;Parent=Phyra76492;rank=1 scaffold_18 . exon 372756 374483 . + . ID=Phyra76492.1;Parent=Phyra76492;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 374800 375393 . - . ID=Phyra76493;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000124;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 374800 375393 . - . ID=Phyra76493;Parent=Phyra76493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 374800 375393 . - 0 ID=Phyra76493;Parent=Phyra76493;rank=1 scaffold_18 . exon 374800 375393 . - . ID=Phyra76493.1;Parent=Phyra76493;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 375707 377458 . - . ID=Phyra76494;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000125;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 375707 377458 . - . ID=Phyra76494;Parent=Phyra76494;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 375707 377458 . - 0 ID=Phyra76494;Parent=Phyra76494;rank=1 scaffold_18 . exon 375707 377458 . - . ID=Phyra76494.1;Parent=Phyra76494;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 377908 379650 . + . ID=Phyra76495;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000126;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 377908 379650 . + . ID=Phyra76495;Parent=Phyra76495;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 377908 379650 . + 0 ID=Phyra76495;Parent=Phyra76495;rank=1 scaffold_18 . exon 377908 379650 . + . ID=Phyra76495.1;Parent=Phyra76495;constitutive=1;rank=1 scaffold_18 . biological_region 380179 380181 0.999 + . logic_name=eponine scaffold_18 . biological_region 381048 381048 0.999 + . logic_name=eponine scaffold_18 . biological_region 383589 383589 0.999 - . logic_name=eponine scaffold_18 . biological_region 383603 383610 0.999 + . logic_name=eponine scaffold_18 . biological_region 384521 384521 0.999 - . logic_name=eponine scaffold_18 . biological_region 387486 387489 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 380881 381507 . - . ID=Phyra71421;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000012;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 380881 381507 . - . ID=Phyra71421;Parent=Phyra71421;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 380881 381507 . - 0 ID=Phyra71421;Parent=Phyra71421;rank=1 scaffold_18 . exon 380881 381507 . - . ID=Phyra71421.1;Parent=Phyra71421;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 379788 380544 . - . ID=Phyra76496;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000127;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 379788 380544 . - . ID=Phyra76496;Parent=Phyra76496;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 379788 380354 . - 0 ID=Phyra76496;Parent=Phyra76496;rank=2 scaffold_18 . exon 379788 380354 . - . ID=Phyra76496.2;Parent=Phyra76496;constitutive=1;rank=2 scaffold_18 . CDS 380419 380544 . - 0 ID=Phyra76496;Parent=Phyra76496;rank=1 scaffold_18 . exon 380419 380544 . - . ID=Phyra76496.1;Parent=Phyra76496;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 381682 384807 . - . ID=Phyra76498;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000129;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 381682 384807 . - . ID=Phyra76498;Parent=Phyra76498;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 381682 383649 . - 0 ID=Phyra76498;Parent=Phyra76498;rank=3 scaffold_18 . exon 381682 383649 . - . ID=Phyra76498.3;Parent=Phyra76498;constitutive=1;rank=3 scaffold_18 . CDS 383718 384204 . - 0 ID=Phyra76498;Parent=Phyra76498;rank=2 scaffold_18 . exon 383718 384204 . - . ID=Phyra76498.2;Parent=Phyra76498;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 384317 384807 . - 0 ID=Phyra76498;Parent=Phyra76498;rank=1 scaffold_18 . exon 384317 384807 . - . ID=Phyra76498.1;Parent=Phyra76498;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 ensembl protein_coding_gene 386877 388163 . + . ID=Phyra94505;biotype=protein_coding;external_name=C_scaffold_18000047;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 386877 388163 . + . ID=Phyra94505;Parent=Phyra94505;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 386877 386914 . + 0 ID=Phyra94505;Parent=Phyra94505;rank=1 scaffold_18 . exon 386877 386914 . + . ID=Phyra94505.1;Parent=Phyra94505;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 386983 387091 . + 0 ID=Phyra94505;Parent=Phyra94505;rank=2 scaffold_18 . exon 386983 387091 . + . ID=Phyra94505.2;Parent=Phyra94505;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 387190 387546 . + 0 ID=Phyra94505;Parent=Phyra94505;rank=3 scaffold_18 . exon 387190 387546 . + . ID=Phyra94505.3;Parent=Phyra94505;constitutive=1;rank=3 scaffold_18 . CDS 387634 387744 . + 0 ID=Phyra94505;Parent=Phyra94505;rank=4 scaffold_18 . exon 387634 387744 . + . ID=Phyra94505.4;Parent=Phyra94505;constitutive=1;rank=4 scaffold_18 . CDS 387825 388027 . + 0 ID=Phyra94505;Parent=Phyra94505;rank=5 scaffold_18 . exon 387825 388027 . + . ID=Phyra94505.5;Parent=Phyra94505;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_18 . CDS 388109 388163 . + 0 ID=Phyra94505;Parent=Phyra94505;rank=6 scaffold_18 ensembl protein_coding_gene 388615 391505 . - . ID=Phyra76500;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000131;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 388615 391505 . - . ID=Phyra76500;Parent=Phyra76500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 388615 388634 . - 0 ID=Phyra76500;Parent=Phyra76500;rank=6 scaffold_18 . exon 388615 388634 . - . ID=Phyra76500.6;Parent=Phyra76500;constitutive=1;ensembl_phase=1;rank=6 scaffold_18 . CDS 388928 389603 . - 0 ID=Phyra76500;Parent=Phyra76500;rank=5 scaffold_18 . exon 388928 389603 . - . ID=Phyra76500.5;Parent=Phyra76500;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_18 . CDS 389641 389720 . - 0 ID=Phyra76500;Parent=Phyra76500;rank=4 scaffold_18 . exon 389641 389720 . - . ID=Phyra76500.4;Parent=Phyra76500;constitutive=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 389994 390052 . - 0 ID=Phyra76500;Parent=Phyra76500;rank=3 scaffold_18 . exon 389994 390052 . - . ID=Phyra76500.3;Parent=Phyra76500;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 390578 390601 . - 0 ID=Phyra76500;Parent=Phyra76500;rank=2 scaffold_18 . exon 390578 390601 . - . ID=Phyra76500.2;Parent=Phyra76500;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_18 . CDS 390622 391505 . - 0 ID=Phyra76500;Parent=Phyra76500;rank=1 scaffold_18 . exon 390622 391505 . - . ID=Phyra76500.1;Parent=Phyra76500;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 ensembl protein_coding_gene 392342 396287 . + . ID=Phyra76501;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000132;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 392342 396287 . + . ID=Phyra76501;Parent=Phyra76501;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 392342 393769 . + 0 ID=Phyra76501;Parent=Phyra76501;rank=1 scaffold_18 . exon 392342 393769 . + . ID=Phyra76501.1;Parent=Phyra76501;constitutive=1;rank=1 scaffold_18 . CDS 393896 393912 . + 0 ID=Phyra76501;Parent=Phyra76501;rank=2 scaffold_18 . exon 393896 393912 . + . ID=Phyra76501.2;Parent=Phyra76501;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_18 . CDS 393985 395787 . + 0 ID=Phyra76501;Parent=Phyra76501;rank=3 scaffold_18 . exon 393985 395787 . + . ID=Phyra76501.3;Parent=Phyra76501;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_18 . CDS 395864 396008 . + 0 ID=Phyra76501;Parent=Phyra76501;rank=4 scaffold_18 . exon 395864 396008 . + . ID=Phyra76501.4;Parent=Phyra76501;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 . CDS 396075 396287 . + 0 ID=Phyra76501;Parent=Phyra76501;rank=5 scaffold_18 . exon 396075 396287 . + . ID=Phyra76501.5;Parent=Phyra76501;constitutive=1;rank=5 scaffold_18 ensembl protein_coding_gene 396481 398659 . - . ID=Phyra76502;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000133;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 396481 398659 . - . ID=Phyra76502;Parent=Phyra76502;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 396481 396523 . - 0 ID=Phyra76502;Parent=Phyra76502;rank=8 scaffold_18 . exon 396481 396523 . - . ID=Phyra76502.8;Parent=Phyra76502;constitutive=1;ensembl_phase=2;rank=8 scaffold_18 . CDS 396543 397081 . - 0 ID=Phyra76502;Parent=Phyra76502;rank=7 scaffold_18 . exon 396543 397081 . - . ID=Phyra76502.7;Parent=Phyra76502;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_18 . CDS 397154 397550 . - 0 ID=Phyra76502;Parent=Phyra76502;rank=6 scaffold_18 . exon 397154 397550 . - . ID=Phyra76502.6;Parent=Phyra76502;constitutive=1;ensembl_phase=2;rank=6 scaffold_18 . CDS 397614 397733 . - 0 ID=Phyra76502;Parent=Phyra76502;rank=5 scaffold_18 . exon 397614 397733 . - . ID=Phyra76502.5;Parent=Phyra76502;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_18 . CDS 397878 398063 . - 0 ID=Phyra76502;Parent=Phyra76502;rank=4 scaffold_18 . exon 397878 398063 . - . ID=Phyra76502.4;Parent=Phyra76502;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_18 . CDS 398169 398218 . - 0 ID=Phyra76502;Parent=Phyra76502;rank=3 scaffold_18 . CDS 398304 398367 . - 0 ID=Phyra76502;Parent=Phyra76502;rank=2 scaffold_18 . CDS 398460 398659 . - 0 ID=Phyra76502;Parent=Phyra76502;rank=1 scaffold_18 . exon 388109 388163 . + . ID=Phyra94505.6;Parent=Phyra94505;constitutive=1;ensembl_phase=2;rank=6 scaffold_18 . biological_region 399231 399233 0.999 - . logic_name=eponine scaffold_18 . repeat_region 399408 399415 . ? . description=dust scaffold_18 . biological_region 401061 401063 0.999 + . logic_name=eponine scaffold_18 . biological_region 401224 401224 0.999 - . logic_name=eponine scaffold_18 . biological_region 402324 402325 0.999 + . logic_name=eponine scaffold_18 . biological_region 402752 402756 0.999 + . logic_name=eponine scaffold_18 . repeat_region 403130 403157 . ? . description=trf scaffold_18 . biological_region 403607 403609 0.999 + . logic_name=eponine scaffold_18 . biological_region 404421 404422 0.999 - . logic_name=eponine scaffold_18 . biological_region 404818 404819 0.999 + . logic_name=eponine scaffold_18 . repeat_region 405940 405953 . ? . description=dust scaffold_18 . biological_region 407278 407278 0.999 + . logic_name=eponine scaffold_18 . biological_region 407434 407436 0.999 + . logic_name=eponine scaffold_18 ensembl protein_coding_gene 402107 403129 . - . ID=Phyra71422;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000013;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 402107 403129 . - . ID=Phyra71422;Parent=Phyra71422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 402107 403129 . - 0 ID=Phyra71422;Parent=Phyra71422;rank=1 scaffold_18 . exon 402107 403129 . - . ID=Phyra71422.1;Parent=Phyra71422;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 404172 404888 . - . ID=Phyra71423;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000014;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 404172 404888 . - . ID=Phyra71423;Parent=Phyra71423;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 404172 404888 . - 0 ID=Phyra71423;Parent=Phyra71423;rank=1 scaffold_18 . exon 404172 404888 . - . ID=Phyra71423.1;Parent=Phyra71423;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 406631 407632 . - . ID=Phyra71424;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000015;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 406631 407632 . - . ID=Phyra71424;Parent=Phyra71424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 406631 407632 . - 0 ID=Phyra71424;Parent=Phyra71424;rank=1 scaffold_18 . exon 406631 407632 . - . ID=Phyra71424.1;Parent=Phyra71424;constitutive=1;rank=1 scaffold_18 . exon 398169 398218 . - . ID=Phyra76502.3;Parent=Phyra76502;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_18 . exon 398304 398367 . - . ID=Phyra76502.2;Parent=Phyra76502;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . exon 398460 398659 . - . ID=Phyra76502.1;Parent=Phyra76502;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 ensembl protein_coding_gene 398815 399827 . + . ID=Phyra76503;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000134;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 398815 399827 . + . ID=Phyra76503;Parent=Phyra76503;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 398815 399636 . + 0 ID=Phyra76503;Parent=Phyra76503;rank=1 scaffold_18 . exon 398815 399636 . + . ID=Phyra76503.1;Parent=Phyra76503;constitutive=1;rank=1 scaffold_18 . CDS 399804 399827 . + 0 ID=Phyra76503;Parent=Phyra76503;rank=2 scaffold_18 . exon 399804 399827 . + . ID=Phyra76503.2;Parent=Phyra76503;constitutive=1;rank=2 scaffold_18 ensembl protein_coding_gene 400415 401416 . - . ID=Phyra76504;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000135;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 400415 401416 . - . ID=Phyra76504;Parent=Phyra76504;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 400415 401416 . - 0 ID=Phyra76504;Parent=Phyra76504;rank=1 scaffold_18 . exon 400415 401416 . - . ID=Phyra76504.1;Parent=Phyra76504;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 405059 405435 . - . ID=Phyra76507;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000138;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 405059 405435 . - . ID=Phyra76507;Parent=Phyra76507;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 405059 405164 . - 0 ID=Phyra76507;Parent=Phyra76507;rank=2 scaffold_18 . exon 405059 405164 . - . ID=Phyra76507.2;Parent=Phyra76507;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 405230 405435 . - 0 ID=Phyra76507;Parent=Phyra76507;rank=1 scaffold_18 . exon 405230 405435 . - . ID=Phyra76507.1;Parent=Phyra76507;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 ensembl protein_coding_gene 407848 409038 . + . ID=Phyra76509;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000140;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 407848 409038 . + . ID=Phyra76509;Parent=Phyra76509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 407848 407979 . + 0 ID=Phyra76509;Parent=Phyra76509;rank=1 scaffold_18 . exon 407848 407979 . + . ID=Phyra76509.1;Parent=Phyra76509;constitutive=1;rank=1 scaffold_18 . CDS 408048 408119 . + 0 ID=Phyra76509;Parent=Phyra76509;rank=2 scaffold_18 . CDS 408198 408674 . + 0 ID=Phyra76509;Parent=Phyra76509;rank=3 scaffold_18 . CDS 408740 408903 . + 0 ID=Phyra76509;Parent=Phyra76509;rank=4 scaffold_18 . CDS 408966 409038 . + 0 ID=Phyra76509;Parent=Phyra76509;rank=5 scaffold_18 ensembl protein_coding_gene 412828 413829 . + . ID=Phyra71425;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000016;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 412828 413829 . + . ID=Phyra71425;Parent=Phyra71425;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 412828 413829 . + 0 ID=Phyra71425;Parent=Phyra71425;rank=1 scaffold_18 . exon 412828 413829 . + . ID=Phyra71425.1;Parent=Phyra71425;constitutive=1;rank=1 scaffold_18 . exon 408048 408119 . + . ID=Phyra76509.2;Parent=Phyra76509;constitutive=1;rank=2 scaffold_18 . exon 408198 408674 . + . ID=Phyra76509.3;Parent=Phyra76509;constitutive=1;rank=3 scaffold_18 . exon 408740 408903 . + . ID=Phyra76509.4;Parent=Phyra76509;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_18 . exon 408966 409038 . + . ID=Phyra76509.5;Parent=Phyra76509;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 ensembl protein_coding_gene 409401 410275 . - . ID=Phyra76510;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000141;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 409401 410275 . - . ID=Phyra76510;Parent=Phyra76510;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 409401 409710 . - 0 ID=Phyra76510;Parent=Phyra76510;rank=3 scaffold_18 . exon 409401 409710 . - . ID=Phyra76510.3;Parent=Phyra76510;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 409810 409897 . - 0 ID=Phyra76510;Parent=Phyra76510;rank=2 scaffold_18 . exon 409810 409897 . - . ID=Phyra76510.2;Parent=Phyra76510;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_18 . CDS 410122 410275 . - 0 ID=Phyra76510;Parent=Phyra76510;rank=1 scaffold_18 . exon 410122 410275 . - . ID=Phyra76510.1;Parent=Phyra76510;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 411328 412433 . + . ID=Phyra76511;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000142;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 411328 412433 . + . ID=Phyra76511;Parent=Phyra76511;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 411328 411414 . + 0 ID=Phyra76511;Parent=Phyra76511;rank=1 scaffold_18 . exon 411328 411414 . + . ID=Phyra76511.1;Parent=Phyra76511;constitutive=1;rank=1 scaffold_18 . CDS 411479 411609 . + 0 ID=Phyra76511;Parent=Phyra76511;rank=2 scaffold_18 . exon 411479 411609 . + . ID=Phyra76511.2;Parent=Phyra76511;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_18 . CDS 411684 411992 . + 0 ID=Phyra76511;Parent=Phyra76511;rank=3 scaffold_18 . exon 411684 411992 . + . ID=Phyra76511.3;Parent=Phyra76511;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_18 . CDS 412109 412433 . + 0 ID=Phyra76511;Parent=Phyra76511;rank=4 scaffold_18 . exon 412109 412433 . + . ID=Phyra76511.4;Parent=Phyra76511;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 ensembl protein_coding_gene 414047 415605 . + . ID=Phyra94511;biotype=protein_coding;external_name=C_scaffold_18000053;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 414047 415605 . + . ID=Phyra94511;Parent=Phyra94511;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 414047 415327 . + 0 ID=Phyra94511;Parent=Phyra94511;rank=1 scaffold_18 . exon 414047 415327 . + . ID=Phyra94511.1;Parent=Phyra94511;constitutive=1;rank=1 scaffold_18 . CDS 415540 415605 . + 0 ID=Phyra94511;Parent=Phyra94511;rank=2 scaffold_18 . exon 415540 415605 . + . ID=Phyra94511.2;Parent=Phyra94511;constitutive=1;rank=2 scaffold_18 ensembl protein_coding_gene 415727 419019 . - . ID=Phyra94513;biotype=protein_coding;external_name=C_scaffold_18000055;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 415727 419019 . - . ID=Phyra94513;Parent=Phyra94513;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 415727 415932 . - 0 ID=Phyra94513;Parent=Phyra94513;rank=13 scaffold_18 . exon 415727 415932 . - . ID=Phyra94513.13;Parent=Phyra94513;constitutive=1;ensembl_phase=1;rank=13 scaffold_18 . CDS 416140 416359 . - 0 ID=Phyra94513;Parent=Phyra94513;rank=12 scaffold_18 . exon 416140 416359 . - . ID=Phyra94513.12;Parent=Phyra94513;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_18 . CDS 416409 416470 . - 0 ID=Phyra94513;Parent=Phyra94513;rank=11 scaffold_18 . exon 416409 416470 . - . ID=Phyra94513.11;Parent=Phyra94513;constitutive=1;ensembl_phase=1;rank=11 scaffold_18 . CDS 416546 417150 . - 0 ID=Phyra94513;Parent=Phyra94513;rank=10 scaffold_18 . exon 416546 417150 . - . ID=Phyra94513.10;Parent=Phyra94513;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_18 . CDS 417552 417645 . - 0 ID=Phyra94513;Parent=Phyra94513;rank=9 scaffold_18 . exon 417552 417645 . - . ID=Phyra94513.9;Parent=Phyra94513;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_18 . CDS 417708 417831 . - 0 ID=Phyra94513;Parent=Phyra94513;rank=8 scaffold_18 . exon 417708 417831 . - . ID=Phyra94513.8;Parent=Phyra94513;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_18 . CDS 417909 417987 . - 0 ID=Phyra94513;Parent=Phyra94513;rank=7 scaffold_18 . CDS 418071 418168 . - 0 ID=Phyra94513;Parent=Phyra94513;rank=6 scaffold_18 . CDS 418232 418300 . - 0 ID=Phyra94513;Parent=Phyra94513;rank=5 scaffold_18 . CDS 418370 418456 . - 0 ID=Phyra94513;Parent=Phyra94513;rank=4 scaffold_18 . CDS 418532 418598 . - 0 ID=Phyra94513;Parent=Phyra94513;rank=3 scaffold_18 . CDS 418660 418689 . - 0 ID=Phyra94513;Parent=Phyra94513;rank=2 scaffold_18 . CDS 418769 419019 . - 0 ID=Phyra94513;Parent=Phyra94513;rank=1 scaffold_18 . biological_region 419780 419782 0.999 - . logic_name=eponine scaffold_18 . biological_region 420097 420102 0.999 - . logic_name=eponine scaffold_18 . biological_region 420167 420170 0.999 - . logic_name=eponine scaffold_18 . biological_region 422658 422666 0.999 + . logic_name=eponine scaffold_18 . biological_region 424968 424968 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 419421 420380 . + . ID=Phyra71426;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000017;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 419421 420380 . + . ID=Phyra71426;Parent=Phyra71426;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 419421 420380 . + 0 ID=Phyra71426;Parent=Phyra71426;rank=1 scaffold_18 . exon 419421 420380 . + . ID=Phyra71426.1;Parent=Phyra71426;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 420742 422357 . - . ID=Phyra71427;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000018;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 420742 422357 . - . ID=Phyra71427;Parent=Phyra71427;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 420742 420875 . - 0 ID=Phyra71427;Parent=Phyra71427;rank=2 scaffold_18 . exon 420742 420875 . - . ID=Phyra71427.2;Parent=Phyra71427;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 420962 422357 . - 0 ID=Phyra71427;Parent=Phyra71427;rank=1 scaffold_18 . exon 420962 422357 . - . ID=Phyra71427.1;Parent=Phyra71427;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 422503 423602 . + . ID=Phyra76518;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000149;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 422503 423602 . + . ID=Phyra76518;Parent=Phyra76518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 422503 422991 . + 0 ID=Phyra76518;Parent=Phyra76518;rank=1 scaffold_18 . exon 422503 422991 . + . ID=Phyra76518.1;Parent=Phyra76518;constitutive=1;rank=1 scaffold_18 . CDS 423054 423167 . + 0 ID=Phyra76518;Parent=Phyra76518;rank=2 scaffold_18 . exon 423054 423167 . + . ID=Phyra76518.2;Parent=Phyra76518;constitutive=1;rank=2 scaffold_18 . CDS 423243 423602 . + 0 ID=Phyra76518;Parent=Phyra76518;rank=3 scaffold_18 . exon 423243 423602 . + . ID=Phyra76518.3;Parent=Phyra76518;constitutive=1;rank=3 scaffold_18 ensembl protein_coding_gene 425387 426641 . + . ID=Phyra76519;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000150;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 425387 426641 . + . ID=Phyra76519;Parent=Phyra76519;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 425387 426583 . + 0 ID=Phyra76519;Parent=Phyra76519;rank=1 scaffold_18 . exon 425387 426583 . + . ID=Phyra76519.1;Parent=Phyra76519;constitutive=1;rank=1 scaffold_18 . CDS 426630 426641 . + 0 ID=Phyra76519;Parent=Phyra76519;rank=2 scaffold_18 . exon 426630 426641 . + . ID=Phyra76519.2;Parent=Phyra76519;constitutive=1;rank=2 scaffold_18 . exon 417909 417987 . - . ID=Phyra94513.7;Parent=Phyra94513;constitutive=1;ensembl_phase=2;rank=7 scaffold_18 . exon 418071 418168 . - . ID=Phyra94513.6;Parent=Phyra94513;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_18 . exon 418232 418300 . - . ID=Phyra94513.5;Parent=Phyra94513;constitutive=1;rank=5 scaffold_18 . exon 418370 418456 . - . ID=Phyra94513.4;Parent=Phyra94513;constitutive=1;rank=4 scaffold_18 . exon 418532 418598 . - . ID=Phyra94513.3;Parent=Phyra94513;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 . exon 418660 418689 . - . ID=Phyra94513.2;Parent=Phyra94513;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_18 . exon 418769 419019 . - . ID=Phyra94513.1;Parent=Phyra94513;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 ensembl protein_coding_gene 427254 428051 . - . ID=Phyra94516;biotype=protein_coding;external_name=C_scaffold_18000058;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 427254 428051 . - . ID=Phyra94516;Parent=Phyra94516;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 427254 428051 . - 0 ID=Phyra94516;Parent=Phyra94516;rank=1 scaffold_18 . exon 427254 428051 . - . ID=Phyra94516.1;Parent=Phyra94516;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 429209 430513 . + . ID=Phyra71428;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000019;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 429209 430513 . + . ID=Phyra71428;Parent=Phyra71428;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 429209 430513 . + 0 ID=Phyra71428;Parent=Phyra71428;rank=1 scaffold_18 . exon 429209 430513 . + . ID=Phyra71428.1;Parent=Phyra71428;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 430632 432752 . - . ID=Phyra76522;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000153;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 430632 432752 . - . ID=Phyra76522;Parent=Phyra76522;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 430632 432752 . - 0 ID=Phyra76522;Parent=Phyra76522;rank=1 scaffold_18 . exon 430632 432752 . - . ID=Phyra76522.1;Parent=Phyra76522;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 433028 436434 . + . ID=Phyra76523;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000154;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 433028 436434 . + . ID=Phyra76523;Parent=Phyra76523;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 433028 433056 . + 0 ID=Phyra76523;Parent=Phyra76523;rank=1 scaffold_18 . exon 433028 433056 . + . ID=Phyra76523.1;Parent=Phyra76523;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 433130 435357 . + 0 ID=Phyra76523;Parent=Phyra76523;rank=2 scaffold_18 . exon 433130 435357 . + . ID=Phyra76523.2;Parent=Phyra76523;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 435508 436017 . + 0 ID=Phyra76523;Parent=Phyra76523;rank=3 scaffold_18 . exon 435508 436017 . + . ID=Phyra76523.3;Parent=Phyra76523;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 436127 436257 . + 0 ID=Phyra76523;Parent=Phyra76523;rank=4 scaffold_18 . exon 436127 436257 . + . ID=Phyra76523.4;Parent=Phyra76523;constitutive=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 436330 436434 . + 0 ID=Phyra76523;Parent=Phyra76523;rank=5 scaffold_18 . exon 436330 436434 . + . ID=Phyra76523.5;Parent=Phyra76523;constitutive=1;rank=5 scaffold_18 ensembl protein_coding_gene 436658 440688 . - . ID=Phyra76524;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000155;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 436658 440688 . - . ID=Phyra76524;Parent=Phyra76524;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 436658 436663 . - 0 ID=Phyra76524;Parent=Phyra76524;rank=2 scaffold_18 . exon 436658 436663 . - . ID=Phyra76524.2;Parent=Phyra76524;constitutive=1;rank=2 scaffold_18 . CDS 436861 440688 . - 0 ID=Phyra76524;Parent=Phyra76524;rank=1 scaffold_18 . exon 436861 440688 . - . ID=Phyra76524.1;Parent=Phyra76524;constitutive=1;rank=1 scaffold_18 . biological_region 440386 440390 0.999 + . logic_name=eponine scaffold_18 . biological_region 440618 440622 0.999 + . logic_name=eponine scaffold_18 . biological_region 446150 446152 0.999 + . logic_name=eponine scaffold_18 . biological_region 446616 446619 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 441286 442542 . + . ID=Phyra43118;biotype=protein_coding;external_name=gwEuk.18.81.1;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 441286 442542 . + . ID=Phyra43118;Parent=Phyra43118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 441286 442542 . + 0 ID=Phyra43118;Parent=Phyra43118;rank=1 scaffold_18 . exon 441286 442542 . + . ID=Phyra43118.1;Parent=Phyra43118;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 442740 443445 . - . ID=Phyra76526;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000157;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 442740 443445 . - . ID=Phyra76526;Parent=Phyra76526;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 442740 443149 . - 0 ID=Phyra76526;Parent=Phyra76526;rank=2 scaffold_18 . exon 442740 443149 . - . ID=Phyra76526.2;Parent=Phyra76526;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 443178 443445 . - 0 ID=Phyra76526;Parent=Phyra76526;rank=1 scaffold_18 . exon 443178 443445 . - . ID=Phyra76526.1;Parent=Phyra76526;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 443722 445659 . + . ID=Phyra76527;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000158;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 443722 445659 . + . ID=Phyra76527;Parent=Phyra76527;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 443722 445659 . + 0 ID=Phyra76527;Parent=Phyra76527;rank=1 scaffold_18 . exon 443722 445659 . + . ID=Phyra76527.1;Parent=Phyra76527;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 445984 449397 . - . ID=Phyra76528;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000159;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 445984 449397 . - . ID=Phyra76528;Parent=Phyra76528;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 445984 449397 . - 0 ID=Phyra76528;Parent=Phyra76528;rank=1 scaffold_18 . exon 445984 449397 . - . ID=Phyra76528.1;Parent=Phyra76528;constitutive=1;rank=1 scaffold_18 . repeat_region 449286 449368 . ? . description=trf scaffold_18 . repeat_region 455409 455516 . ? . description=trf scaffold_18 . repeat_region 455421 455500 . ? . description=trf scaffold_18 . repeat_region 455429 455486 . ? . description=dust scaffold_18 . repeat_region 455431 455539 . ? . description=trf scaffold_18 . repeat_region 455956 456366 . ? . description=trf scaffold_18 . repeat_region 455976 456365 . ? . description=trf scaffold_18 . repeat_region 455976 456367 . ? . description=trf scaffold_18 ensembl protein_coding_gene 451212 452990 . + . ID=Phyra76529;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000160;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 451212 452990 . + . ID=Phyra76529;Parent=Phyra76529;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 451212 452990 . + 0 ID=Phyra76529;Parent=Phyra76529;rank=1 scaffold_18 . exon 451212 452990 . + . ID=Phyra76529.1;Parent=Phyra76529;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 453298 459311 . + . ID=Phyra94521;biotype=protein_coding;external_name=C_scaffold_18000063;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 453298 459311 . + . ID=Phyra94521;Parent=Phyra94521;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 453298 454909 . + 0 ID=Phyra94521;Parent=Phyra94521;rank=1 scaffold_18 . exon 453298 454909 . + . ID=Phyra94521.1;Parent=Phyra94521;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 455324 456489 . + 0 ID=Phyra94521;Parent=Phyra94521;rank=2 scaffold_18 . exon 455324 456489 . + . ID=Phyra94521.2;Parent=Phyra94521;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 456525 459311 . + 0 ID=Phyra94521;Parent=Phyra94521;rank=3 scaffold_18 . exon 456525 459311 . + . ID=Phyra94521.3;Parent=Phyra94521;constitutive=1;rank=3 scaffold_18 . biological_region 463002 463005 0.999 + . logic_name=eponine scaffold_18 . biological_region 464619 464625 0.999 + . logic_name=eponine scaffold_18 ensembl protein_coding_gene 459689 462455 . - . ID=Phyra76531;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000162;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 459689 462455 . - . ID=Phyra76531;Parent=Phyra76531;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 459689 462340 . - 0 ID=Phyra76531;Parent=Phyra76531;rank=2 scaffold_18 . exon 459689 462340 . - . ID=Phyra76531.2;Parent=Phyra76531;constitutive=1;rank=2 scaffold_18 . CDS 462420 462455 . - 0 ID=Phyra76531;Parent=Phyra76531;rank=1 scaffold_18 . exon 462420 462455 . - . ID=Phyra76531.1;Parent=Phyra76531;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 462613 463932 . + . ID=Phyra76532;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000163;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 462613 463932 . + . ID=Phyra76532;Parent=Phyra76532;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 462613 463932 . + 0 ID=Phyra76532;Parent=Phyra76532;rank=1 scaffold_18 . exon 462613 463932 . + . ID=Phyra76532.1;Parent=Phyra76532;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 464173 465704 . + . ID=Phyra76533;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000164;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 464173 465704 . + . ID=Phyra76533;Parent=Phyra76533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 464173 464571 . + 0 ID=Phyra76533;Parent=Phyra76533;rank=1 scaffold_18 . exon 464173 464571 . + . ID=Phyra76533.1;Parent=Phyra76533;constitutive=1;rank=1 scaffold_18 . CDS 464793 464806 . + 0 ID=Phyra76533;Parent=Phyra76533;rank=2 scaffold_18 . exon 464793 464806 . + . ID=Phyra76533.2;Parent=Phyra76533;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_18 . CDS 464831 465100 . + 0 ID=Phyra76533;Parent=Phyra76533;rank=3 scaffold_18 . exon 464831 465100 . + . ID=Phyra76533.3;Parent=Phyra76533;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_18 . CDS 465161 465232 . + 0 ID=Phyra76533;Parent=Phyra76533;rank=4 scaffold_18 . exon 465161 465232 . + . ID=Phyra76533.4;Parent=Phyra76533;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_18 . CDS 465302 465704 . + 0 ID=Phyra76533;Parent=Phyra76533;rank=5 scaffold_18 . exon 465302 465704 . + . ID=Phyra76533.5;Parent=Phyra76533;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 ensembl protein_coding_gene 466042 467532 . - . ID=Phyra94523;biotype=protein_coding;external_name=C_scaffold_18000065;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 466042 467532 . - . ID=Phyra94523;Parent=Phyra94523;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 466042 466228 . - 0 ID=Phyra94523;Parent=Phyra94523;rank=5 scaffold_18 . exon 466042 466228 . - . ID=Phyra94523.5;Parent=Phyra94523;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 . CDS 466303 466805 . - 0 ID=Phyra94523;Parent=Phyra94523;rank=4 scaffold_18 . exon 466303 466805 . - . ID=Phyra94523.4;Parent=Phyra94523;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_18 . CDS 466882 467081 . - 0 ID=Phyra94523;Parent=Phyra94523;rank=3 scaffold_18 . exon 466882 467081 . - . ID=Phyra94523.3;Parent=Phyra94523;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 467164 467333 . - 0 ID=Phyra94523;Parent=Phyra94523;rank=2 scaffold_18 . exon 467164 467333 . - . ID=Phyra94523.2;Parent=Phyra94523;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 467393 467532 . - 0 ID=Phyra94523;Parent=Phyra94523;rank=1 scaffold_18 . exon 467393 467532 . - . ID=Phyra94523.1;Parent=Phyra94523;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . repeat_region 469296 469304 . ? . description=dust scaffold_18 . repeat_region 471577 471619 . ? . description=trf scaffold_18 . repeat_region 471581 471628 . ? . description=trf scaffold_18 . repeat_region 474113 474148 . ? . description=trf scaffold_18 ensembl protein_coding_gene 470669 471616 . - . ID=Phyra76535;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000166;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 470669 471616 . - . ID=Phyra76535;Parent=Phyra76535;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 470669 470814 . - 0 ID=Phyra76535;Parent=Phyra76535;rank=4 scaffold_18 . exon 470669 470814 . - . ID=Phyra76535.4;Parent=Phyra76535;constitutive=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 470956 471069 . - 0 ID=Phyra76535;Parent=Phyra76535;rank=3 scaffold_18 . exon 470956 471069 . - . ID=Phyra76535.3;Parent=Phyra76535;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 471117 471332 . - 0 ID=Phyra76535;Parent=Phyra76535;rank=2 scaffold_18 . exon 471117 471332 . - . ID=Phyra76535.2;Parent=Phyra76535;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 471391 471616 . - 0 ID=Phyra76535;Parent=Phyra76535;rank=1 scaffold_18 . exon 471391 471616 . - . ID=Phyra76535.1;Parent=Phyra76535;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 473169 473540 . - . ID=Phyra76536;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000167;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 473169 473540 . - . ID=Phyra76536;Parent=Phyra76536;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 473169 473540 . - 0 ID=Phyra76536;Parent=Phyra76536;rank=1 scaffold_18 . exon 473169 473540 . - . ID=Phyra76536.1;Parent=Phyra76536;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 482872 484212 . + . ID=Phyra71430;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000021;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 482872 484212 . + . ID=Phyra71430;Parent=Phyra71430;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 482872 484212 . + 0 ID=Phyra71430;Parent=Phyra71430;rank=1 scaffold_18 . exon 482872 484212 . + . ID=Phyra71430.1;Parent=Phyra71430;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 480326 482431 . - . ID=Phyra76537;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000168;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 480326 482431 . - . ID=Phyra76537;Parent=Phyra76537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 480326 480510 . - 0 ID=Phyra76537;Parent=Phyra76537;rank=5 scaffold_18 . exon 480326 480510 . - . ID=Phyra76537.5;Parent=Phyra76537;constitutive=1;ensembl_phase=1;rank=5 scaffold_18 . CDS 480582 481028 . - 0 ID=Phyra76537;Parent=Phyra76537;rank=4 scaffold_18 . exon 480582 481028 . - . ID=Phyra76537.4;Parent=Phyra76537;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 481074 481577 . - 0 ID=Phyra76537;Parent=Phyra76537;rank=3 scaffold_18 . exon 481074 481577 . - . ID=Phyra76537.3;Parent=Phyra76537;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 481654 481921 . - 0 ID=Phyra76537;Parent=Phyra76537;rank=2 scaffold_18 . exon 481654 481921 . - . ID=Phyra76537.2;Parent=Phyra76537;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . CDS 482006 482431 . - 0 ID=Phyra76537;Parent=Phyra76537;rank=1 scaffold_18 . exon 482006 482431 . - . ID=Phyra76537.1;Parent=Phyra76537;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 484321 485163 . - . ID=Phyra76539;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000170;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 484321 485163 . - . ID=Phyra76539;Parent=Phyra76539;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 484321 485163 . - 0 ID=Phyra76539;Parent=Phyra76539;rank=1 scaffold_18 . exon 484321 485163 . - . ID=Phyra76539.1;Parent=Phyra76539;constitutive=1;rank=1 scaffold_18 . biological_region 490164 490165 0.999 + . logic_name=eponine scaffold_18 . biological_region 490537 490541 0.999 - . logic_name=eponine scaffold_18 . repeat_region 491193 491219 . ? . description=trf scaffold_18 ensembl protein_coding_gene 489189 489799 . - . ID=Phyra76540;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000171;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 489189 489799 . - . ID=Phyra76540;Parent=Phyra76540;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 489189 489232 . - 0 ID=Phyra76540;Parent=Phyra76540;rank=3 scaffold_18 . exon 489189 489232 . - . ID=Phyra76540.3;Parent=Phyra76540;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 489312 489501 . - 0 ID=Phyra76540;Parent=Phyra76540;rank=2 scaffold_18 . exon 489312 489501 . - . ID=Phyra76540.2;Parent=Phyra76540;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . CDS 489542 489799 . - 0 ID=Phyra76540;Parent=Phyra76540;rank=1 scaffold_18 . exon 489542 489799 . - . ID=Phyra76540.1;Parent=Phyra76540;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 490021 491551 . + . ID=Phyra76541;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000172;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 490021 491551 . + . ID=Phyra76541;Parent=Phyra76541;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 490021 491331 . + 0 ID=Phyra76541;Parent=Phyra76541;rank=1 scaffold_18 . exon 490021 491331 . + . ID=Phyra76541.1;Parent=Phyra76541;constitutive=1;rank=1 scaffold_18 . CDS 491531 491551 . + 0 ID=Phyra76541;Parent=Phyra76541;rank=2 scaffold_18 . exon 491531 491551 . + . ID=Phyra76541.2;Parent=Phyra76541;constitutive=1;rank=2 scaffold_18 ensembl protein_coding_gene 498688 506983 . + . ID=Phyra94524;biotype=protein_coding;external_name=C_scaffold_18000066;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 498688 506983 . + . ID=Phyra94524;Parent=Phyra94524;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 498688 498845 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=1 scaffold_18 . exon 498688 498845 . + . ID=Phyra94524.1;Parent=Phyra94524;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 498948 499101 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=2 scaffold_18 . exon 498948 499101 . + . ID=Phyra94524.2;Parent=Phyra94524;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 499513 499672 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=3 scaffold_18 . exon 499513 499672 . + . ID=Phyra94524.3;Parent=Phyra94524;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_18 . CDS 499750 499790 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=4 scaffold_18 . exon 499750 499790 . + . ID=Phyra94524.4;Parent=Phyra94524;constitutive=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 499837 499978 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=5 scaffold_18 . exon 499837 499978 . + . ID=Phyra94524.5;Parent=Phyra94524;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_18 . CDS 500000 500175 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=6 scaffold_18 . exon 500000 500175 . + . ID=Phyra94524.6;Parent=Phyra94524;constitutive=1;ensembl_phase=1;rank=6 scaffold_18 . CDS 500203 500527 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=7 scaffold_18 . exon 500203 500527 . + . ID=Phyra94524.7;Parent=Phyra94524;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_18 . CDS 500555 501136 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=8 scaffold_18 . exon 500555 501136 . + . ID=Phyra94524.8;Parent=Phyra94524;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_18 . CDS 501179 501364 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=9 scaffold_18 . exon 501179 501364 . + . ID=Phyra94524.9;Parent=Phyra94524;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_18 . CDS 501599 502133 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=10 scaffold_18 . exon 501599 502133 . + . ID=Phyra94524.10;Parent=Phyra94524;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_18 . CDS 502248 502438 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=11 scaffold_18 . exon 502248 502438 . + . ID=Phyra94524.11;Parent=Phyra94524;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_18 . CDS 502496 502574 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=12 scaffold_18 . exon 502496 502574 . + . ID=Phyra94524.12;Parent=Phyra94524;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_18 . CDS 502653 502768 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=13 scaffold_18 . exon 502653 502768 . + . ID=Phyra94524.13;Parent=Phyra94524;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=13 scaffold_18 . CDS 502883 503832 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=14 scaffold_18 . exon 502883 503832 . + . ID=Phyra94524.14;Parent=Phyra94524;constitutive=1;ensembl_phase=1;rank=14 scaffold_18 . CDS 503896 504559 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=15 scaffold_18 . exon 503896 504559 . + . ID=Phyra94524.15;Parent=Phyra94524;constitutive=1;ensembl_end_phase=1;rank=15 scaffold_18 . CDS 504679 504703 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=16 scaffold_18 . exon 504679 504703 . + . ID=Phyra94524.16;Parent=Phyra94524;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=16 scaffold_18 . CDS 504755 505759 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=17 scaffold_18 . exon 504755 505759 . + . ID=Phyra94524.17;Parent=Phyra94524;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=17 scaffold_18 . CDS 506000 506272 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=18 scaffold_18 . exon 506000 506272 . + . ID=Phyra94524.18;Parent=Phyra94524;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=18 scaffold_18 . CDS 506624 506950 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=19 scaffold_18 . exon 506624 506950 . + . ID=Phyra94524.19;Parent=Phyra94524;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=19 scaffold_18 . CDS 506971 506983 . + 0 ID=Phyra94524;Parent=Phyra94524;rank=20 scaffold_18 . exon 506971 506983 . + . ID=Phyra94524.20;Parent=Phyra94524;constitutive=1;ensembl_phase=2;rank=20 scaffold_18 . biological_region 515400 515405 0.999 + . logic_name=eponine scaffold_18 ensembl protein_coding_gene 507744 510435 . - . ID=Phyra76543;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000174;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 507744 510435 . - . ID=Phyra76543;Parent=Phyra76543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 507744 508178 . - 0 ID=Phyra76543;Parent=Phyra76543;rank=4 scaffold_18 . exon 507744 508178 . - . ID=Phyra76543.4;Parent=Phyra76543;constitutive=1;rank=4 scaffold_18 . CDS 508497 508604 . - 0 ID=Phyra76543;Parent=Phyra76543;rank=3 scaffold_18 . exon 508497 508604 . - . ID=Phyra76543.3;Parent=Phyra76543;constitutive=1;rank=3 scaffold_18 . CDS 508671 508870 . - 0 ID=Phyra76543;Parent=Phyra76543;rank=2 scaffold_18 . exon 508671 508870 . - . ID=Phyra76543.2;Parent=Phyra76543;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 508944 510435 . - 0 ID=Phyra76543;Parent=Phyra76543;rank=1 scaffold_18 . exon 508944 510435 . - . ID=Phyra76543.1;Parent=Phyra76543;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 510873 513621 . + . ID=Phyra94526;biotype=protein_coding;external_name=C_scaffold_18000068;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 510873 513621 . + . ID=Phyra94526;Parent=Phyra94526;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 510873 511129 . + 0 ID=Phyra94526;Parent=Phyra94526;rank=1 scaffold_18 . exon 510873 511129 . + . ID=Phyra94526.1;Parent=Phyra94526;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 511202 512850 . + 0 ID=Phyra94526;Parent=Phyra94526;rank=2 scaffold_18 . exon 511202 512850 . + . ID=Phyra94526.2;Parent=Phyra94526;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 512884 513170 . + 0 ID=Phyra94526;Parent=Phyra94526;rank=3 scaffold_18 . exon 512884 513170 . + . ID=Phyra94526.3;Parent=Phyra94526;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 513225 513543 . + 0 ID=Phyra94526;Parent=Phyra94526;rank=4 scaffold_18 . exon 513225 513543 . + . ID=Phyra94526.4;Parent=Phyra94526;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_18 . CDS 513602 513621 . + 0 ID=Phyra94526;Parent=Phyra94526;rank=5 scaffold_18 . exon 513602 513621 . + . ID=Phyra94526.5;Parent=Phyra94526;constitutive=1;ensembl_phase=1;rank=5 scaffold_18 ensembl protein_coding_gene 513975 519731 . + . ID=Phyra94527;biotype=protein_coding;external_name=C_scaffold_18000069;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 513975 519731 . + . ID=Phyra94527;Parent=Phyra94527;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 513975 514124 . + 0 ID=Phyra94527;Parent=Phyra94527;rank=1 scaffold_18 . exon 513975 514124 . + . ID=Phyra94527.1;Parent=Phyra94527;constitutive=1;rank=1 scaffold_18 . CDS 514293 514427 . + 0 ID=Phyra94527;Parent=Phyra94527;rank=2 scaffold_18 . exon 514293 514427 . + . ID=Phyra94527.2;Parent=Phyra94527;constitutive=1;rank=2 scaffold_18 . CDS 514524 514551 . + 0 ID=Phyra94527;Parent=Phyra94527;rank=3 scaffold_18 . exon 514524 514551 . + . ID=Phyra94527.3;Parent=Phyra94527;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_18 . CDS 514690 515455 . + 0 ID=Phyra94527;Parent=Phyra94527;rank=4 scaffold_18 . exon 514690 515455 . + . ID=Phyra94527.4;Parent=Phyra94527;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_18 . CDS 515863 515863 . + 0 ID=Phyra94527;Parent=Phyra94527;rank=5 scaffold_18 . exon 515863 515863 . + . ID=Phyra94527.5;Parent=Phyra94527;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 . CDS 515886 516054 . + 0 ID=Phyra94527;Parent=Phyra94527;rank=6 scaffold_18 . exon 515886 516054 . + . ID=Phyra94527.6;Parent=Phyra94527;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_18 . CDS 516310 516428 . + 0 ID=Phyra94527;Parent=Phyra94527;rank=7 scaffold_18 . exon 516310 516428 . + . ID=Phyra94527.7;Parent=Phyra94527;constitutive=1;ensembl_phase=1;rank=7 scaffold_18 . CDS 516576 516736 . + 0 ID=Phyra94527;Parent=Phyra94527;rank=8 scaffold_18 . exon 516576 516736 . + . ID=Phyra94527.8;Parent=Phyra94527;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_18 . CDS 516818 517280 . + 0 ID=Phyra94527;Parent=Phyra94527;rank=9 scaffold_18 . exon 516818 517280 . + . ID=Phyra94527.9;Parent=Phyra94527;constitutive=1;ensembl_phase=2;rank=9 scaffold_18 . CDS 517326 519493 . + 0 ID=Phyra94527;Parent=Phyra94527;rank=10 scaffold_18 . exon 517326 519493 . + . ID=Phyra94527.10;Parent=Phyra94527;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_18 . CDS 519527 519731 . + 0 ID=Phyra94527;Parent=Phyra94527;rank=11 scaffold_18 . repeat_region 521345 521373 . ? . description=trf scaffold_18 . repeat_region 523794 523810 . ? . description=dust scaffold_18 ensembl protein_coding_gene 521696 522049 . + . ID=Phyra76546;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000177;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 521696 522049 . + . ID=Phyra76546;Parent=Phyra76546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 521696 522049 . + 0 ID=Phyra76546;Parent=Phyra76546;rank=1 scaffold_18 . exon 521696 522049 . + . ID=Phyra76546.1;Parent=Phyra76546;constitutive=1;rank=1 scaffold_18 . exon 519527 519731 . + . ID=Phyra94527.11;Parent=Phyra94527;constitutive=1;ensembl_phase=2;rank=11 scaffold_18 ensembl protein_coding_gene 522229 524104 . - . ID=Phyra94528;biotype=protein_coding;external_name=C_scaffold_18000070;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 522229 524104 . - . ID=Phyra94528;Parent=Phyra94528;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 522229 522236 . - 0 ID=Phyra94528;Parent=Phyra94528;rank=10 scaffold_18 . exon 522229 522236 . - . ID=Phyra94528.10;Parent=Phyra94528;constitutive=1;ensembl_phase=1;rank=10 scaffold_18 . CDS 522293 522428 . - 0 ID=Phyra94528;Parent=Phyra94528;rank=9 scaffold_18 . exon 522293 522428 . - . ID=Phyra94528.9;Parent=Phyra94528;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_18 . CDS 522504 522864 . - 0 ID=Phyra94528;Parent=Phyra94528;rank=8 scaffold_18 . exon 522504 522864 . - . ID=Phyra94528.8;Parent=Phyra94528;constitutive=1;ensembl_phase=2;rank=8 scaffold_18 . CDS 522936 523039 . - 0 ID=Phyra94528;Parent=Phyra94528;rank=7 scaffold_18 . exon 522936 523039 . - . ID=Phyra94528.7;Parent=Phyra94528;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_18 . CDS 523113 523196 . - 0 ID=Phyra94528;Parent=Phyra94528;rank=6 scaffold_18 . exon 523113 523196 . - . ID=Phyra94528.6;Parent=Phyra94528;constitutive=1;rank=6 scaffold_18 . CDS 523264 523359 . - 0 ID=Phyra94528;Parent=Phyra94528;rank=5 scaffold_18 . exon 523264 523359 . - . ID=Phyra94528.5;Parent=Phyra94528;constitutive=1;rank=5 scaffold_18 . CDS 523433 523503 . - 0 ID=Phyra94528;Parent=Phyra94528;rank=4 scaffold_18 . exon 523433 523503 . - . ID=Phyra94528.4;Parent=Phyra94528;constitutive=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 523588 523753 . - 0 ID=Phyra94528;Parent=Phyra94528;rank=3 scaffold_18 . exon 523588 523753 . - . ID=Phyra94528.3;Parent=Phyra94528;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_18 . CDS 523819 523865 . - 0 ID=Phyra94528;Parent=Phyra94528;rank=2 scaffold_18 . exon 523819 523865 . - . ID=Phyra94528.2;Parent=Phyra94528;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 523960 524104 . - 0 ID=Phyra94528;Parent=Phyra94528;rank=1 scaffold_18 . exon 523960 524104 . - . ID=Phyra94528.1;Parent=Phyra94528;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 524488 527839 . + . ID=Phyra94529;biotype=protein_coding;external_name=C_scaffold_18000071;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 524488 527839 . + . ID=Phyra94529;Parent=Phyra94529;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 524488 525673 . + 0 ID=Phyra94529;Parent=Phyra94529;rank=1 scaffold_18 . exon 524488 525673 . + . ID=Phyra94529.1;Parent=Phyra94529;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 525751 526073 . + 0 ID=Phyra94529;Parent=Phyra94529;rank=2 scaffold_18 . exon 525751 526073 . + . ID=Phyra94529.2;Parent=Phyra94529;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 526335 526539 . + 0 ID=Phyra94529;Parent=Phyra94529;rank=3 scaffold_18 . exon 526335 526539 . + . ID=Phyra94529.3;Parent=Phyra94529;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_18 . CDS 526732 527027 . + 0 ID=Phyra94529;Parent=Phyra94529;rank=4 scaffold_18 . exon 526732 527027 . + . ID=Phyra94529.4;Parent=Phyra94529;constitutive=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 527143 527410 . + 0 ID=Phyra94529;Parent=Phyra94529;rank=5 scaffold_18 . exon 527143 527410 . + . ID=Phyra94529.5;Parent=Phyra94529;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_18 . CDS 527487 527839 . + 0 ID=Phyra94529;Parent=Phyra94529;rank=6 scaffold_18 . biological_region 534420 534425 0.999 + . logic_name=eponine scaffold_18 . biological_region 535358 535363 0.999 - . logic_name=eponine scaffold_18 . biological_region 536803 536804 0.999 + . logic_name=eponine scaffold_18 . biological_region 537131 537134 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 534829 535668 . + . ID=Phyra71431;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_18000022;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 534829 535668 . + . ID=Phyra71431;Parent=Phyra71431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 534829 535668 . + 0 ID=Phyra71431;Parent=Phyra71431;rank=1 scaffold_18 . exon 534829 535668 . + . ID=Phyra71431.1;Parent=Phyra71431;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 527959 529553 . - . ID=Phyra76549;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000180;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 527959 529553 . - . ID=Phyra76549;Parent=Phyra76549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 527959 528101 . - 0 ID=Phyra76549;Parent=Phyra76549;rank=3 scaffold_18 . exon 527959 528101 . - . ID=Phyra76549.3;Parent=Phyra76549;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 528263 528298 . - 0 ID=Phyra76549;Parent=Phyra76549;rank=2 scaffold_18 . exon 528263 528298 . - . ID=Phyra76549.2;Parent=Phyra76549;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 528320 529553 . - 0 ID=Phyra76549;Parent=Phyra76549;rank=1 scaffold_18 . exon 528320 529553 . - . ID=Phyra76549.1;Parent=Phyra76549;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 533183 534683 . - . ID=Phyra76550;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000181;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 533183 534683 . - . ID=Phyra76550;Parent=Phyra76550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 533183 533491 . - 0 ID=Phyra76550;Parent=Phyra76550;rank=4 scaffold_18 . exon 533183 533491 . - . ID=Phyra76550.4;Parent=Phyra76550;constitutive=1;rank=4 scaffold_18 . CDS 533578 533970 . - 0 ID=Phyra76550;Parent=Phyra76550;rank=3 scaffold_18 . exon 533578 533970 . - . ID=Phyra76550.3;Parent=Phyra76550;constitutive=1;rank=3 scaffold_18 . CDS 534083 534284 . - 0 ID=Phyra76550;Parent=Phyra76550;rank=2 scaffold_18 . exon 534083 534284 . - . ID=Phyra76550.2;Parent=Phyra76550;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 534428 534681 . - 0 ID=Phyra76550;Parent=Phyra76550;rank=1 scaffold_18 . exon 534428 534683 . - . ID=Phyra76550.1;Parent=Phyra76550;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_18 ensembl protein_coding_gene 536304 537719 . - . ID=Phyra76552;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000183;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 536304 537719 . - . ID=Phyra76552;Parent=Phyra76552;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 536304 537719 . - 0 ID=Phyra76552;Parent=Phyra76552;rank=1 scaffold_18 . exon 536304 537719 . - . ID=Phyra76552.1;Parent=Phyra76552;constitutive=1;rank=1 scaffold_18 . exon 527487 527839 . + . ID=Phyra94529.6;Parent=Phyra94529;constitutive=1;ensembl_phase=1;rank=6 scaffold_18 . repeat_region 540953 540992 . ? . description=trf scaffold_18 . repeat_region 543569 543588 . ? . description=trf scaffold_18 . repeat_region 543569 543588 . ? . description=dust scaffold_18 ensembl protein_coding_gene 539930 541639 . + . ID=Phyra76553;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000184;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 539930 541639 . + . ID=Phyra76553;Parent=Phyra76553;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 539930 540264 . + 0 ID=Phyra76553;Parent=Phyra76553;rank=1 scaffold_18 . exon 539930 540264 . + . ID=Phyra76553.1;Parent=Phyra76553;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 540338 540461 . + 0 ID=Phyra76553;Parent=Phyra76553;rank=2 scaffold_18 . exon 540338 540461 . + . ID=Phyra76553.2;Parent=Phyra76553;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 540524 540925 . + 0 ID=Phyra76553;Parent=Phyra76553;rank=3 scaffold_18 . exon 540524 540925 . + . ID=Phyra76553.3;Parent=Phyra76553;constitutive=1;rank=3 scaffold_18 . CDS 540996 541136 . + 0 ID=Phyra76553;Parent=Phyra76553;rank=4 scaffold_18 . exon 540996 541136 . + . ID=Phyra76553.4;Parent=Phyra76553;constitutive=1;rank=4 scaffold_18 . CDS 541214 541639 . + 0 ID=Phyra76553;Parent=Phyra76553;rank=5 scaffold_18 . exon 541214 541639 . + . ID=Phyra76553.5;Parent=Phyra76553;constitutive=1;rank=5 scaffold_18 ensembl protein_coding_gene 542593 543186 . + . ID=Phyra76554;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000185;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 542593 543186 . + . ID=Phyra76554;Parent=Phyra76554;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 542593 543186 . + 0 ID=Phyra76554;Parent=Phyra76554;rank=1 scaffold_18 . exon 542593 543186 . + . ID=Phyra76554.1;Parent=Phyra76554;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 544325 544921 . + . ID=Phyra76555;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000186;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 544325 544921 . + . ID=Phyra76555;Parent=Phyra76555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 544325 544921 . + 0 ID=Phyra76555;Parent=Phyra76555;rank=1 scaffold_18 . exon 544325 544921 . + . ID=Phyra76555.1;Parent=Phyra76555;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 545271 545948 . - . ID=Phyra76556;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000187;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 545271 545948 . - . ID=Phyra76556;Parent=Phyra76556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 545271 545948 . - 0 ID=Phyra76556;Parent=Phyra76556;rank=1 scaffold_18 . exon 545271 545948 . - . ID=Phyra76556.1;Parent=Phyra76556;constitutive=1;rank=1 scaffold_18 . biological_region 551926 551927 0.999 + . logic_name=eponine scaffold_18 . biological_region 555174 555175 0.999 + . logic_name=eponine scaffold_18 . biological_region 555794 555801 0.999 - . logic_name=eponine scaffold_18 . biological_region 555873 555876 0.999 - . logic_name=eponine scaffold_18 . biological_region 557057 557058 0.999 + . logic_name=eponine scaffold_18 ensembl protein_coding_gene 547391 550781 . - . ID=Phyra76557;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000188;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 547391 550781 . - . ID=Phyra76557;Parent=Phyra76557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 547391 549124 . - 0 ID=Phyra76557;Parent=Phyra76557;rank=3 scaffold_18 . exon 547391 549124 . - . ID=Phyra76557.3;Parent=Phyra76557;constitutive=1;rank=3 scaffold_18 . CDS 549425 550266 . - 0 ID=Phyra76557;Parent=Phyra76557;rank=2 scaffold_18 . exon 549425 550266 . - . ID=Phyra76557.2;Parent=Phyra76557;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 550328 550781 . - 0 ID=Phyra76557;Parent=Phyra76557;rank=1 scaffold_18 . exon 550328 550781 . - . ID=Phyra76557.1;Parent=Phyra76557;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 550908 552043 . - . ID=Phyra76558;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000189;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 550908 552043 . - . ID=Phyra76558;Parent=Phyra76558;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 550908 551234 . - 0 ID=Phyra76558;Parent=Phyra76558;rank=4 scaffold_18 . exon 550908 551234 . - . ID=Phyra76558.4;Parent=Phyra76558;constitutive=1;rank=4 scaffold_18 . CDS 551309 551465 . - 0 ID=Phyra76558;Parent=Phyra76558;rank=3 scaffold_18 . exon 551309 551465 . - . ID=Phyra76558.3;Parent=Phyra76558;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 551545 551752 . - 0 ID=Phyra76558;Parent=Phyra76558;rank=2 scaffold_18 . exon 551545 551752 . - . ID=Phyra76558.2;Parent=Phyra76558;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_18 . CDS 551830 552043 . - 0 ID=Phyra76558;Parent=Phyra76558;rank=1 scaffold_18 . exon 551830 552043 . - . ID=Phyra76558.1;Parent=Phyra76558;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 552299 557029 . + . ID=Phyra94534;biotype=protein_coding;external_name=C_scaffold_18000076;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 552299 557029 . + . ID=Phyra94534;Parent=Phyra94534;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 552299 553158 . + 0 ID=Phyra94534;Parent=Phyra94534;rank=1 scaffold_18 . exon 552299 553158 . + . ID=Phyra94534.1;Parent=Phyra94534;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 553241 553559 . + 0 ID=Phyra94534;Parent=Phyra94534;rank=2 scaffold_18 . exon 553241 553559 . + . ID=Phyra94534.2;Parent=Phyra94534;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 553633 554078 . + 0 ID=Phyra94534;Parent=Phyra94534;rank=3 scaffold_18 . exon 553633 554078 . + . ID=Phyra94534.3;Parent=Phyra94534;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_18 . CDS 554159 554434 . + 0 ID=Phyra94534;Parent=Phyra94534;rank=4 scaffold_18 . exon 554159 554434 . + . ID=Phyra94534.4;Parent=Phyra94534;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_18 . CDS 554471 554870 . + 0 ID=Phyra94534;Parent=Phyra94534;rank=5 scaffold_18 . exon 554471 554870 . + . ID=Phyra94534.5;Parent=Phyra94534;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 . CDS 554933 555409 . + 0 ID=Phyra94534;Parent=Phyra94534;rank=6 scaffold_18 . exon 554933 555409 . + . ID=Phyra94534.6;Parent=Phyra94534;constitutive=1;rank=6 scaffold_18 . CDS 555641 556145 . + 0 ID=Phyra94534;Parent=Phyra94534;rank=7 scaffold_18 . exon 555641 556145 . + . ID=Phyra94534.7;Parent=Phyra94534;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_18 . CDS 556506 557029 . + 0 ID=Phyra94534;Parent=Phyra94534;rank=8 scaffold_18 . exon 556506 557029 . + . ID=Phyra94534.8;Parent=Phyra94534;constitutive=1;ensembl_phase=1;rank=8 scaffold_18 . repeat_region 563192 563238 . ? . description=trf scaffold_18 . repeat_region 565398 565447 . ? . description=dust scaffold_18 ensembl protein_coding_gene 557414 561835 . - . ID=Phyra76560;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000191;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 557414 561835 . - . ID=Phyra76560;Parent=Phyra76560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 557414 561835 . - 0 ID=Phyra76560;Parent=Phyra76560;rank=1 scaffold_18 . exon 557414 561835 . - . ID=Phyra76560.1;Parent=Phyra76560;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 563831 565927 . + . ID=Phyra76562;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000193;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 563831 565927 . + . ID=Phyra76562;Parent=Phyra76562;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 563831 565204 . + 0 ID=Phyra76562;Parent=Phyra76562;rank=1 scaffold_18 . exon 563831 565204 . + . ID=Phyra76562.1;Parent=Phyra76562;constitutive=1;rank=1 scaffold_18 . CDS 565620 565650 . + 0 ID=Phyra76562;Parent=Phyra76562;rank=2 scaffold_18 . exon 565620 565650 . + . ID=Phyra76562.2;Parent=Phyra76562;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . CDS 565716 565927 . + 0 ID=Phyra76562;Parent=Phyra76562;rank=3 scaffold_18 . exon 565716 565927 . + . ID=Phyra76562.3;Parent=Phyra76562;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 ensembl protein_coding_gene 562253 563402 . - . ID=Phyra94537;biotype=protein_coding;external_name=C_scaffold_18000079;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 562253 563402 . - . ID=Phyra94537;Parent=Phyra94537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 562253 562306 . - 0 ID=Phyra94537;Parent=Phyra94537;rank=5 scaffold_18 . exon 562253 562306 . - . ID=Phyra94537.5;Parent=Phyra94537;constitutive=1;rank=5 scaffold_18 . CDS 562409 562513 . - 0 ID=Phyra94537;Parent=Phyra94537;rank=4 scaffold_18 . exon 562409 562513 . - . ID=Phyra94537.4;Parent=Phyra94537;constitutive=1;rank=4 scaffold_18 . CDS 562598 562665 . - 0 ID=Phyra94537;Parent=Phyra94537;rank=3 scaffold_18 . exon 562598 562665 . - . ID=Phyra94537.3;Parent=Phyra94537;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 562733 562769 . - 0 ID=Phyra94537;Parent=Phyra94537;rank=2 scaffold_18 . exon 562733 562769 . - . ID=Phyra94537.2;Parent=Phyra94537;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . CDS 562854 563402 . - 0 ID=Phyra94537;Parent=Phyra94537;rank=1 scaffold_18 . exon 562854 563402 . - . ID=Phyra94537.1;Parent=Phyra94537;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 567085 569008 . + . ID=Phyra94543;biotype=protein_coding;external_name=C_scaffold_18000085;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 567085 569008 . + . ID=Phyra94543;Parent=Phyra94543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 567085 567221 . + 0 ID=Phyra94543;Parent=Phyra94543;rank=1 scaffold_18 . exon 567085 567221 . + . ID=Phyra94543.1;Parent=Phyra94543;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 567297 567590 . + 0 ID=Phyra94543;Parent=Phyra94543;rank=2 scaffold_18 . CDS 567674 568301 . + 0 ID=Phyra94543;Parent=Phyra94543;rank=3 scaffold_18 . CDS 568382 568465 . + 0 ID=Phyra94543;Parent=Phyra94543;rank=4 scaffold_18 . CDS 568536 568810 . + 0 ID=Phyra94543;Parent=Phyra94543;rank=5 scaffold_18 . CDS 568879 569008 . + 0 ID=Phyra94543;Parent=Phyra94543;rank=6 scaffold_18 . biological_region 567178 567180 0.999 - . logic_name=eponine scaffold_18 . biological_region 567246 567247 0.999 - . logic_name=eponine scaffold_18 . biological_region 574783 574786 0.999 - . logic_name=eponine scaffold_18 . biological_region 574816 574819 0.999 + . logic_name=eponine scaffold_18 ensembl protein_coding_gene 571923 574209 . - . ID=Phyra76565;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000196;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 571923 574209 . - . ID=Phyra76565;Parent=Phyra76565;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 571923 572123 . - 0 ID=Phyra76565;Parent=Phyra76565;rank=7 scaffold_18 . exon 571923 572123 . - . ID=Phyra76565.7;Parent=Phyra76565;constitutive=1;rank=7 scaffold_18 . CDS 572337 572604 . - 0 ID=Phyra76565;Parent=Phyra76565;rank=6 scaffold_18 . exon 572337 572604 . - . ID=Phyra76565.6;Parent=Phyra76565;constitutive=1;ensembl_phase=2;rank=6 scaffold_18 . CDS 572668 572993 . - 0 ID=Phyra76565;Parent=Phyra76565;rank=5 scaffold_18 . exon 572668 572993 . - . ID=Phyra76565.5;Parent=Phyra76565;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_18 . CDS 573059 573628 . - 0 ID=Phyra76565;Parent=Phyra76565;rank=4 scaffold_18 . exon 573059 573628 . - . ID=Phyra76565.4;Parent=Phyra76565;constitutive=1;rank=4 scaffold_18 . CDS 573694 573816 . - 0 ID=Phyra76565;Parent=Phyra76565;rank=3 scaffold_18 . exon 573694 573816 . - . ID=Phyra76565.3;Parent=Phyra76565;constitutive=1;rank=3 scaffold_18 . CDS 573907 574053 . - 0 ID=Phyra76565;Parent=Phyra76565;rank=2 scaffold_18 . exon 573907 574053 . - . ID=Phyra76565.2;Parent=Phyra76565;constitutive=1;rank=2 scaffold_18 . CDS 574126 574209 . - 0 ID=Phyra76565;Parent=Phyra76565;rank=1 scaffold_18 . exon 574126 574209 . - . ID=Phyra76565.1;Parent=Phyra76565;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 574637 575622 . + . ID=Phyra76566;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000197;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 574637 575622 . + . ID=Phyra76566;Parent=Phyra76566;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 574637 574837 . + 0 ID=Phyra76566;Parent=Phyra76566;rank=1 scaffold_18 . exon 574637 574837 . + . ID=Phyra76566.1;Parent=Phyra76566;constitutive=1;rank=1 scaffold_18 . CDS 574906 575622 . + 0 ID=Phyra76566;Parent=Phyra76566;rank=2 scaffold_18 . exon 574906 575622 . + . ID=Phyra76566.2;Parent=Phyra76566;constitutive=1;rank=2 scaffold_18 . exon 567297 567590 . + . ID=Phyra94543.2;Parent=Phyra94543;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_18 . exon 567674 568301 . + . ID=Phyra94543.3;Parent=Phyra94543;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 . exon 568382 568465 . + . ID=Phyra94543.4;Parent=Phyra94543;constitutive=1;rank=4 scaffold_18 . exon 568536 568810 . + . ID=Phyra94543.5;Parent=Phyra94543;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_18 . exon 568879 569008 . + . ID=Phyra94543.6;Parent=Phyra94543;constitutive=1;ensembl_phase=2;rank=6 scaffold_18 ensembl protein_coding_gene 569629 571341 . - . ID=Phyra94544;biotype=protein_coding;external_name=C_scaffold_18000086;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 569629 571341 . - . ID=Phyra94544;Parent=Phyra94544;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 569629 571341 . - 0 ID=Phyra94544;Parent=Phyra94544;rank=1 scaffold_18 . exon 569629 571341 . - . ID=Phyra94544.1;Parent=Phyra94544;constitutive=1;rank=1 scaffold_18 . repeat_region 581318 581326 . ? . description=dust scaffold_18 . repeat_region 582453 582583 . ? . description=trf scaffold_18 . repeat_region 582453 582583 . ? . description=trf scaffold_18 . repeat_region 582753 582815 . ? . description=trf scaffold_18 . repeat_region 582936 582949 . ? . description=dust scaffold_18 . repeat_region 583576 583588 . ? . description=dust scaffold_18 ensembl protein_coding_gene 578853 579455 . - . ID=Phyra76567;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000198;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 578853 579455 . - . ID=Phyra76567;Parent=Phyra76567;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 578853 578954 . - 0 ID=Phyra76567;Parent=Phyra76567;rank=2 scaffold_18 . exon 578853 578954 . - . ID=Phyra76567.2;Parent=Phyra76567;constitutive=1;rank=2 scaffold_18 . CDS 579033 579455 . - 0 ID=Phyra76567;Parent=Phyra76567;rank=1 scaffold_18 . exon 579033 579455 . - . ID=Phyra76567.1;Parent=Phyra76567;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 582987 596843 . + . ID=Phyra76568;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_18000199;logic_name=jgi_phyra1 scaffold_18 ensembl transcript 582987 596843 . + . ID=Phyra76568;Parent=Phyra76568;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_18 . CDS 582987 583542 . + 0 ID=Phyra76568;Parent=Phyra76568;rank=1 scaffold_18 . exon 582987 583542 . + . ID=Phyra76568.1;Parent=Phyra76568;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 583636 585035 . + 0 ID=Phyra76568;Parent=Phyra76568;rank=2 scaffold_18 . exon 583636 585035 . + . ID=Phyra76568.2;Parent=Phyra76568;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 585079 585110 . + 0 ID=Phyra76568;Parent=Phyra76568;rank=3 scaffold_18 . exon 585079 585110 . + . ID=Phyra76568.3;Parent=Phyra76568;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_18 . CDS 585188 585318 . + 0 ID=Phyra76568;Parent=Phyra76568;rank=4 scaffold_18 . exon 585188 585318 . + . ID=Phyra76568.4;Parent=Phyra76568;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_18 . CDS 585628 587643 . + 0 ID=Phyra76568;Parent=Phyra76568;rank=5 scaffold_18 . exon 585628 587643 . + . ID=Phyra76568.5;Parent=Phyra76568;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_18 . CDS 587725 587742 . + 0 ID=Phyra76568;Parent=Phyra76568;rank=6 scaffold_18 . CDS 587938 588306 . + 0 ID=Phyra76568;Parent=Phyra76568;rank=7 scaffold_18 . CDS 588388 596843 . + 0 ID=Phyra76568;Parent=Phyra76568;rank=8 scaffold_18 . biological_region 594518 594523 0.999 + . logic_name=eponine scaffold_18 . biological_region 594640 594642 0.999 - . logic_name=eponine scaffold_18 . biological_region 594847 594850 0.999 + . logic_name=eponine scaffold_18 . biological_region 594950 594953 0.999 - . logic_name=eponine scaffold_18 . biological_region 595245 595249 0.999 - . logic_name=eponine scaffold_18 . biological_region 595301 595305 0.999 + . logic_name=eponine scaffold_18 . biological_region 596061 596061 0.999 - . logic_name=eponine scaffold_18 . biological_region 596087 596093 0.999 + . logic_name=eponine scaffold_18 . biological_region 596161 596165 0.999 - . logic_name=eponine scaffold_18 . biological_region 596217 596219 0.999 + . logic_name=eponine scaffold_18 . biological_region 596244 596244 0.999 + . logic_name=eponine scaffold_18 . biological_region 596264 596265 0.999 + . logic_name=eponine scaffold_18 . biological_region 596364 596364 0.999 - . logic_name=eponine scaffold_18 . biological_region 596474 596476 0.999 - . logic_name=eponine scaffold_18 . biological_region 596527 596533 0.999 + . logic_name=eponine scaffold_18 . exon 587725 587742 . + . ID=Phyra76568.6;Parent=Phyra76568;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_18 . exon 587938 588306 . + . ID=Phyra76568.7;Parent=Phyra76568;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_18 . exon 588388 596843 . + . ID=Phyra76568.8;Parent=Phyra76568;constitutive=1;ensembl_phase=1;rank=8 ##gff-version 3 ##sequence-region scaffold_17 1 600116 scaffold_17 . repeat_region 864 897 . ? . description=trf scaffold_17 . repeat_region 1171 1194 . ? . description=trf scaffold_17 . biological_region 1356 1356 0.999 - . logic_name=eponine scaffold_17 . repeat_region 1604 1637 . ? . description=trf scaffold_17 . repeat_region 1911 1934 . ? . description=trf scaffold_17 . biological_region 2096 2096 0.999 - . logic_name=eponine scaffold_17 . repeat_region 2342 2375 . ? . description=trf scaffold_17 . repeat_region 3625 4015 . ? . description=dust scaffold_17 . repeat_region 7531 7574 . ? . description=trf scaffold_17 . repeat_region 8291 8300 . ? . description=dust scaffold_17 . repeat_region 9016 9069 . ? . description=trf scaffold_17 ensembl tRNA_gene 2028 2100 . + . ID=EPrPRAG00000000097;biotype=tRNA;description=tRNA-Arg for anticodon CCU [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_17 ensembl transcript 2028 2100 . + . ID=EPrPRAT00000000097;Parent=EPrPRAG00000000097;biotype=tRNA;logic_name=ncrna_eg scaffold_17 ensembl tRNA_gene 1288 1360 . + . ID=EPrPRAG00000000180;biotype=tRNA;description=tRNA-Arg for anticodon CCU [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_17 ensembl transcript 1288 1360 . + . ID=EPrPRAT00000000180;Parent=EPrPRAG00000000180;biotype=tRNA;logic_name=ncrna_eg scaffold_17 . exon 2028 2100 . + . ID=EPrPRAE00000000097;Parent=EPrPRAT00000000097;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . exon 1288 1360 . + . ID=EPrPRAE00000000180;Parent=EPrPRAT00000000180;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 4068 7907 . - . ID=Phyra76239;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000001;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 4068 7907 . - . ID=Phyra76239;Parent=Phyra76239;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 4068 4190 . - 0 ID=Phyra76239;Parent=Phyra76239;rank=5 scaffold_17 . exon 4068 4190 . - . ID=Phyra76239.5;Parent=Phyra76239;constitutive=1;rank=5 scaffold_17 . CDS 4211 4676 . - 0 ID=Phyra76239;Parent=Phyra76239;rank=4 scaffold_17 . exon 4211 4676 . - . ID=Phyra76239.4;Parent=Phyra76239;constitutive=1;ensembl_phase=2;rank=4 scaffold_17 . CDS 4746 5670 . - 0 ID=Phyra76239;Parent=Phyra76239;rank=3 scaffold_17 . exon 4746 5670 . - . ID=Phyra76239.3;Parent=Phyra76239;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_17 . CDS 5693 7763 . - 0 ID=Phyra76239;Parent=Phyra76239;rank=2 scaffold_17 . exon 5693 7763 . - . ID=Phyra76239.2;Parent=Phyra76239;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 7794 7907 . - 0 ID=Phyra76239;Parent=Phyra76239;rank=1 scaffold_17 . exon 7794 7907 . - . ID=Phyra76239.1;Parent=Phyra76239;constitutive=1;rank=1 scaffold_17 . repeat_region 17891 26391 . ? . description=dust scaffold_17 . repeat_region 26905 26919 . ? . description=dust scaffold_17 . biological_region 27875 27876 0.999 + . logic_name=eponine scaffold_17 . biological_region 28789 28792 0.999 - . logic_name=eponine scaffold_17 . biological_region 28845 28849 0.999 + . logic_name=eponine scaffold_17 ensembl protein_coding_gene 27949 30380 . + . ID=Phyra76240;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000002;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 27949 30380 . + . ID=Phyra76240;Parent=Phyra76240;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 27949 28022 . + 0 ID=Phyra76240;Parent=Phyra76240;rank=1 scaffold_17 . exon 27949 28022 . + . ID=Phyra76240.1;Parent=Phyra76240;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 28112 28136 . + 0 ID=Phyra76240;Parent=Phyra76240;rank=2 scaffold_17 . exon 28112 28136 . + . ID=Phyra76240.2;Parent=Phyra76240;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 28220 28510 . + 0 ID=Phyra76240;Parent=Phyra76240;rank=3 scaffold_17 . exon 28220 28510 . + . ID=Phyra76240.3;Parent=Phyra76240;constitutive=1;rank=3 scaffold_17 . CDS 28597 29874 . + 0 ID=Phyra76240;Parent=Phyra76240;rank=4 scaffold_17 . exon 28597 29874 . + . ID=Phyra76240.4;Parent=Phyra76240;constitutive=1;rank=4 scaffold_17 . CDS 30145 30325 . + 0 ID=Phyra76240;Parent=Phyra76240;rank=5 scaffold_17 . CDS 30349 30380 . + 0 ID=Phyra76240;Parent=Phyra76240;rank=6 scaffold_17 . exon 30145 30325 . + . ID=Phyra76240.5;Parent=Phyra76240;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_17 . exon 30349 30380 . + . ID=Phyra76240.6;Parent=Phyra76240;constitutive=1;ensembl_phase=1;rank=6 scaffold_17 ensembl protein_coding_gene 32959 35236 . - . ID=Phyra76241;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000003;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 32959 35236 . - . ID=Phyra76241;Parent=Phyra76241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 32959 33452 . - 0 ID=Phyra76241;Parent=Phyra76241;rank=3 scaffold_17 . exon 32959 33452 . - . ID=Phyra76241.3;Parent=Phyra76241;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 33532 33660 . - 0 ID=Phyra76241;Parent=Phyra76241;rank=2 scaffold_17 . exon 33532 33660 . - . ID=Phyra76241.2;Parent=Phyra76241;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 33724 35236 . - 0 ID=Phyra76241;Parent=Phyra76241;rank=1 scaffold_17 . exon 33724 35236 . - . ID=Phyra76241.1;Parent=Phyra76241;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 35449 37515 . + . ID=Phyra76242;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000004;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 35449 37515 . + . ID=Phyra76242;Parent=Phyra76242;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 35449 36376 . + 0 ID=Phyra76242;Parent=Phyra76242;rank=1 scaffold_17 . exon 35449 36376 . + . ID=Phyra76242.1;Parent=Phyra76242;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 36439 36674 . + 0 ID=Phyra76242;Parent=Phyra76242;rank=2 scaffold_17 . exon 36439 36674 . + . ID=Phyra76242.2;Parent=Phyra76242;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 36744 36905 . + 0 ID=Phyra76242;Parent=Phyra76242;rank=3 scaffold_17 . exon 36744 36905 . + . ID=Phyra76242.3;Parent=Phyra76242;constitutive=1;rank=3 scaffold_17 . CDS 36969 37341 . + 0 ID=Phyra76242;Parent=Phyra76242;rank=4 scaffold_17 . exon 36969 37341 . + . ID=Phyra76242.4;Parent=Phyra76242;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_17 . CDS 37403 37515 . + 0 ID=Phyra76242;Parent=Phyra76242;rank=5 scaffold_17 . exon 37403 37515 . + . ID=Phyra76242.5;Parent=Phyra76242;constitutive=1;ensembl_phase=1;rank=5 scaffold_17 ensembl protein_coding_gene 39005 40972 . + . ID=Phyra76243;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000005;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 39005 40972 . + . ID=Phyra76243;Parent=Phyra76243;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 39005 40972 . + 0 ID=Phyra76243;Parent=Phyra76243;rank=1 scaffold_17 . exon 39005 40972 . + . ID=Phyra76243.1;Parent=Phyra76243;constitutive=1;rank=1 scaffold_17 . biological_region 42583 42585 0.999 + . logic_name=eponine scaffold_17 . biological_region 45751 45752 0.999 + . logic_name=eponine scaffold_17 . biological_region 45820 45824 0.999 - . logic_name=eponine scaffold_17 . repeat_region 45845 45852 . ? . description=dust scaffold_17 ensembl protein_coding_gene 41563 45246 . - . ID=Phyra76244;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000006;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 41563 45246 . - . ID=Phyra76244;Parent=Phyra76244;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 41563 45246 . - 0 ID=Phyra76244;Parent=Phyra76244;rank=1 scaffold_17 . exon 41563 45246 . - . ID=Phyra76244.1;Parent=Phyra76244;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 45591 49766 . + . ID=Phyra94434;biotype=protein_coding;external_name=C_scaffold_17000002;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 45591 49766 . + . ID=Phyra94434;Parent=Phyra94434;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 45591 45665 . + 0 ID=Phyra94434;Parent=Phyra94434;rank=1 scaffold_17 . exon 45591 45665 . + . ID=Phyra94434.1;Parent=Phyra94434;constitutive=1;rank=1 scaffold_17 . CDS 45745 45839 . + 0 ID=Phyra94434;Parent=Phyra94434;rank=2 scaffold_17 . exon 45745 45839 . + . ID=Phyra94434.2;Parent=Phyra94434;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_17 . CDS 45928 46009 . + 0 ID=Phyra94434;Parent=Phyra94434;rank=3 scaffold_17 . exon 45928 46009 . + . ID=Phyra94434.3;Parent=Phyra94434;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 46085 46603 . + 0 ID=Phyra94434;Parent=Phyra94434;rank=4 scaffold_17 . exon 46085 46603 . + . ID=Phyra94434.4;Parent=Phyra94434;constitutive=1;rank=4 scaffold_17 . CDS 46691 46871 . + 0 ID=Phyra94434;Parent=Phyra94434;rank=5 scaffold_17 . exon 46691 46871 . + . ID=Phyra94434.5;Parent=Phyra94434;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_17 . CDS 46947 47104 . + 0 ID=Phyra94434;Parent=Phyra94434;rank=6 scaffold_17 . exon 46947 47104 . + . ID=Phyra94434.6;Parent=Phyra94434;constitutive=1;ensembl_phase=1;rank=6 scaffold_17 . CDS 47135 47275 . + 0 ID=Phyra94434;Parent=Phyra94434;rank=7 scaffold_17 . exon 47135 47275 . + . ID=Phyra94434.7;Parent=Phyra94434;constitutive=1;rank=7 scaffold_17 . CDS 47358 47467 . + 0 ID=Phyra94434;Parent=Phyra94434;rank=8 scaffold_17 . exon 47358 47467 . + . ID=Phyra94434.8;Parent=Phyra94434;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_17 . CDS 47951 48053 . + 0 ID=Phyra94434;Parent=Phyra94434;rank=9 scaffold_17 . exon 47951 48053 . + . ID=Phyra94434.9;Parent=Phyra94434;constitutive=1;ensembl_phase=2;rank=9 scaffold_17 . CDS 48136 48218 . + 0 ID=Phyra94434;Parent=Phyra94434;rank=10 scaffold_17 . exon 48136 48218 . + . ID=Phyra94434.10;Parent=Phyra94434;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_17 . CDS 48424 48778 . + 0 ID=Phyra94434;Parent=Phyra94434;rank=11 scaffold_17 . exon 48424 48778 . + . ID=Phyra94434.11;Parent=Phyra94434;constitutive=1;ensembl_phase=2;rank=11 scaffold_17 . CDS 48908 49188 . + 0 ID=Phyra94434;Parent=Phyra94434;rank=12 scaffold_17 . exon 48908 49188 . + . ID=Phyra94434.12;Parent=Phyra94434;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_17 . CDS 49294 49533 . + 0 ID=Phyra94434;Parent=Phyra94434;rank=13 scaffold_17 . CDS 49745 49766 . + 0 ID=Phyra94434;Parent=Phyra94434;rank=14 scaffold_17 . repeat_region 58950 59000 . ? . description=trf scaffold_17 ensembl protein_coding_gene 55522 56160 . + . ID=Phyra42876;biotype=protein_coding;external_name=gwEuk.17.52.1;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 55522 56160 . + . ID=Phyra42876;Parent=Phyra42876;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 55522 56160 . + 0 ID=Phyra42876;Parent=Phyra42876;rank=1 scaffold_17 . exon 55522 56160 . + . ID=Phyra42876.1;Parent=Phyra42876;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 52095 53045 . + . ID=Phyra71404;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_17000001;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 52095 53045 . + . ID=Phyra71404;Parent=Phyra71404;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 52095 52158 . + 0 ID=Phyra71404;Parent=Phyra71404;rank=1 scaffold_17 . exon 52095 52158 . + . ID=Phyra71404.1;Parent=Phyra71404;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 52372 53045 . + 0 ID=Phyra71404;Parent=Phyra71404;rank=2 scaffold_17 . exon 52372 53045 . + . ID=Phyra71404.2;Parent=Phyra71404;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . exon 49294 49533 . + . ID=Phyra94434.13;Parent=Phyra94434;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=13 scaffold_17 . exon 49745 49766 . + . ID=Phyra94434.14;Parent=Phyra94434;constitutive=1;ensembl_phase=2;rank=14 scaffold_17 ensembl protein_coding_gene 50119 50647 . + . ID=Phyra94435;biotype=protein_coding;external_name=C_scaffold_17000003;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 50119 50647 . + . ID=Phyra94435;Parent=Phyra94435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 50119 50272 . + 0 ID=Phyra94435;Parent=Phyra94435;rank=1 scaffold_17 . exon 50119 50272 . + . ID=Phyra94435.1;Parent=Phyra94435;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 50363 50443 . + 0 ID=Phyra94435;Parent=Phyra94435;rank=2 scaffold_17 . exon 50363 50443 . + . ID=Phyra94435.2;Parent=Phyra94435;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 50559 50647 . + 0 ID=Phyra94435;Parent=Phyra94435;rank=3 scaffold_17 . exon 50559 50647 . + . ID=Phyra94435.3;Parent=Phyra94435;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . repeat_region 60082 60092 . ? . description=dust scaffold_17 . biological_region 60640 60643 0.999 - . logic_name=eponine scaffold_17 . biological_region 60731 60737 0.999 - . logic_name=eponine scaffold_17 . repeat_region 60778 62291 . ? . description=dust scaffold_17 . repeat_region 62335 64460 . - . description=GypsyPi-1c_I-int scaffold_17 . repeat_region 64752 65906 . ? . description=dust scaffold_17 . biological_region 66249 66253 0.999 - . logic_name=eponine scaffold_17 . repeat_region 68102 68114 . ? . description=dust scaffold_17 . repeat_region 68341 68349 . ? . description=dust scaffold_17 ensembl protein_coding_gene 63411 64745 . - . ID=Phyra76248;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000010;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 63411 64745 . - . ID=Phyra76248;Parent=Phyra76248;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 63411 64745 . - 0 ID=Phyra76248;Parent=Phyra76248;rank=1 scaffold_17 . exon 63411 64745 . - . ID=Phyra76248.1;Parent=Phyra76248;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 78400 79521 . - . ID=Phyra71405;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_17000002;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 78400 79521 . - . ID=Phyra71405;Parent=Phyra71405;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 78400 79521 . - 0 ID=Phyra71405;Parent=Phyra71405;rank=1 scaffold_17 . exon 78400 79521 . - . ID=Phyra71405.1;Parent=Phyra71405;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 69234 70214 . + . ID=Phyra76249;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000011;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 69234 70214 . + . ID=Phyra76249;Parent=Phyra76249;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 69234 70214 . + 0 ID=Phyra76249;Parent=Phyra76249;rank=1 scaffold_17 . exon 69234 70214 . + . ID=Phyra76249.1;Parent=Phyra76249;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 70437 72665 . + . ID=Phyra76250;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000012;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 70437 72665 . + . ID=Phyra76250;Parent=Phyra76250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 70437 72665 . + 0 ID=Phyra76250;Parent=Phyra76250;rank=1 scaffold_17 . exon 70437 72665 . + . ID=Phyra76250.1;Parent=Phyra76250;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 72860 74817 . + . ID=Phyra76251;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000013;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 72860 74817 . + . ID=Phyra76251;Parent=Phyra76251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 72860 73264 . + 0 ID=Phyra76251;Parent=Phyra76251;rank=1 scaffold_17 . exon 72860 73264 . + . ID=Phyra76251.1;Parent=Phyra76251;constitutive=1;rank=1 scaffold_17 . CDS 73335 73370 . + 0 ID=Phyra76251;Parent=Phyra76251;rank=2 scaffold_17 . exon 73335 73370 . + . ID=Phyra76251.2;Parent=Phyra76251;constitutive=1;rank=2 scaffold_17 . CDS 73447 73799 . + 0 ID=Phyra76251;Parent=Phyra76251;rank=3 scaffold_17 . exon 73447 73799 . + . ID=Phyra76251.3;Parent=Phyra76251;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_17 . CDS 73872 74073 . + 0 ID=Phyra76251;Parent=Phyra76251;rank=4 scaffold_17 . exon 73872 74073 . + . ID=Phyra76251.4;Parent=Phyra76251;constitutive=1;ensembl_phase=2;rank=4 scaffold_17 . CDS 74240 74333 . + 0 ID=Phyra76251;Parent=Phyra76251;rank=5 scaffold_17 . exon 74240 74333 . + . ID=Phyra76251.5;Parent=Phyra76251;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_17 . CDS 74392 74521 . + 0 ID=Phyra76251;Parent=Phyra76251;rank=6 scaffold_17 . exon 74392 74521 . + . ID=Phyra76251.6;Parent=Phyra76251;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_17 . CDS 74595 74817 . + 0 ID=Phyra76251;Parent=Phyra76251;rank=7 scaffold_17 . exon 74595 74817 . + . ID=Phyra76251.7;Parent=Phyra76251;constitutive=1;ensembl_phase=2;rank=7 scaffold_17 ensembl protein_coding_gene 74983 78102 . - . ID=Phyra76252;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000014;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 74983 78102 . - . ID=Phyra76252;Parent=Phyra76252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 74983 78102 . - 0 ID=Phyra76252;Parent=Phyra76252;rank=1 scaffold_17 . exon 74983 78102 . - . ID=Phyra76252.1;Parent=Phyra76252;constitutive=1;rank=1 scaffold_17 . biological_region 79576 79580 0.999 - . logic_name=eponine scaffold_17 . biological_region 79818 79822 0.999 - . logic_name=eponine scaffold_17 . biological_region 80602 80603 0.999 - . logic_name=eponine scaffold_17 . biological_region 86988 86989 0.999 + . logic_name=eponine scaffold_17 . biological_region 87057 87059 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 79696 80404 . - . ID=Phyra76254;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000016;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 79696 80404 . - . ID=Phyra76254;Parent=Phyra76254;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 79696 80215 . - 0 ID=Phyra76254;Parent=Phyra76254;rank=2 scaffold_17 . exon 79696 80215 . - . ID=Phyra76254.2;Parent=Phyra76254;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 80289 80404 . - 0 ID=Phyra76254;Parent=Phyra76254;rank=1 scaffold_17 . exon 80289 80404 . - . ID=Phyra76254.1;Parent=Phyra76254;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 84903 90278 . - . ID=Phyra94438;biotype=protein_coding;external_name=C_scaffold_17000006;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 84903 90278 . - . ID=Phyra94438;Parent=Phyra94438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 84903 85070 . - 0 ID=Phyra94438;Parent=Phyra94438;rank=15 scaffold_17 . exon 84903 85070 . - . ID=Phyra94438.15;Parent=Phyra94438;constitutive=1;rank=15 scaffold_17 . CDS 85107 85682 . - 0 ID=Phyra94438;Parent=Phyra94438;rank=14 scaffold_17 . exon 85107 85682 . - . ID=Phyra94438.14;Parent=Phyra94438;constitutive=1;rank=14 scaffold_17 . CDS 85745 86094 . - 0 ID=Phyra94438;Parent=Phyra94438;rank=13 scaffold_17 . exon 85745 86094 . - . ID=Phyra94438.13;Parent=Phyra94438;constitutive=1;ensembl_phase=1;rank=13 scaffold_17 . CDS 86134 86291 . - 0 ID=Phyra94438;Parent=Phyra94438;rank=12 scaffold_17 . exon 86134 86291 . - . ID=Phyra94438.12;Parent=Phyra94438;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_17 . CDS 86364 87707 . - 0 ID=Phyra94438;Parent=Phyra94438;rank=11 scaffold_17 . exon 86364 87707 . - . ID=Phyra94438.11;Parent=Phyra94438;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_17 . CDS 87930 87973 . - 0 ID=Phyra94438;Parent=Phyra94438;rank=10 scaffold_17 . exon 87930 87973 . - . ID=Phyra94438.10;Parent=Phyra94438;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_17 . CDS 88043 88151 . - 0 ID=Phyra94438;Parent=Phyra94438;rank=9 scaffold_17 . exon 88043 88151 . - . ID=Phyra94438.9;Parent=Phyra94438;constitutive=1;ensembl_phase=2;rank=9 scaffold_17 . CDS 88221 88293 . - 0 ID=Phyra94438;Parent=Phyra94438;rank=8 scaffold_17 . exon 88221 88293 . - . ID=Phyra94438.8;Parent=Phyra94438;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_17 . CDS 88361 88519 . - 0 ID=Phyra94438;Parent=Phyra94438;rank=7 scaffold_17 . exon 88361 88519 . - . ID=Phyra94438.7;Parent=Phyra94438;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_17 . CDS 88735 88819 . - 0 ID=Phyra94438;Parent=Phyra94438;rank=6 scaffold_17 . CDS 88923 89083 . - 0 ID=Phyra94438;Parent=Phyra94438;rank=5 scaffold_17 . CDS 89114 89399 . - 0 ID=Phyra94438;Parent=Phyra94438;rank=4 scaffold_17 . CDS 89439 89637 . - 0 ID=Phyra94438;Parent=Phyra94438;rank=3 scaffold_17 . CDS 89743 89920 . - 0 ID=Phyra94438;Parent=Phyra94438;rank=2 scaffold_17 . CDS 89993 90278 . - 0 ID=Phyra94438;Parent=Phyra94438;rank=1 scaffold_17 . repeat_region 90395 90402 . ? . description=dust scaffold_17 . repeat_region 91987 92055 . ? . description=trf scaffold_17 . repeat_region 92125 92137 . ? . description=dust scaffold_17 ensembl protein_coding_gene 93533 94621 . - . ID=Phyra42896;biotype=protein_coding;external_name=gwEuk.17.72.1;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 93533 94621 . - . ID=Phyra42896;Parent=Phyra42896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 93533 93981 . - 0 ID=Phyra42896;Parent=Phyra42896;rank=4 scaffold_17 . exon 93533 93981 . - . ID=Phyra42896.4;Parent=Phyra42896;constitutive=1;ensembl_phase=1;rank=4 scaffold_17 . CDS 94069 94189 . - 0 ID=Phyra42896;Parent=Phyra42896;rank=3 scaffold_17 . exon 94069 94189 . - . ID=Phyra42896.3;Parent=Phyra42896;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_17 . CDS 94281 94463 . - 0 ID=Phyra42896;Parent=Phyra42896;rank=2 scaffold_17 . exon 94281 94463 . - . ID=Phyra42896.2;Parent=Phyra42896;constitutive=1;rank=2 scaffold_17 . CDS 94535 94621 . - 0 ID=Phyra42896;Parent=Phyra42896;rank=1 scaffold_17 . exon 94535 94621 . - . ID=Phyra42896.1;Parent=Phyra42896;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 90419 92070 . + . ID=Phyra71406;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_17000003;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 90419 92070 . + . ID=Phyra71406;Parent=Phyra71406;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 90419 90599 . + 0 ID=Phyra71406;Parent=Phyra71406;rank=1 scaffold_17 . exon 90419 90599 . + . ID=Phyra71406.1;Parent=Phyra71406;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 90623 90704 . + 0 ID=Phyra71406;Parent=Phyra71406;rank=2 scaffold_17 . exon 90623 90704 . + . ID=Phyra71406.2;Parent=Phyra71406;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_17 . CDS 90787 90870 . + 0 ID=Phyra71406;Parent=Phyra71406;rank=3 scaffold_17 . exon 90787 90870 . + . ID=Phyra71406.3;Parent=Phyra71406;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_17 . CDS 90937 91585 . + 0 ID=Phyra71406;Parent=Phyra71406;rank=4 scaffold_17 . exon 90937 91585 . + . ID=Phyra71406.4;Parent=Phyra71406;constitutive=1;ensembl_phase=2;rank=4 scaffold_17 . CDS 91656 91725 . + 0 ID=Phyra71406;Parent=Phyra71406;rank=5 scaffold_17 . exon 91656 91725 . + . ID=Phyra71406.5;Parent=Phyra71406;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_17 . CDS 91793 92070 . + 0 ID=Phyra71406;Parent=Phyra71406;rank=6 scaffold_17 . exon 91793 92070 . + . ID=Phyra71406.6;Parent=Phyra71406;constitutive=1;ensembl_phase=1;rank=6 scaffold_17 ensembl protein_coding_gene 96470 97523 . + . ID=Phyra76258;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000020;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 96470 97523 . + . ID=Phyra76258;Parent=Phyra76258;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 96470 96872 . + 0 ID=Phyra76258;Parent=Phyra76258;rank=1 scaffold_17 . exon 96470 96872 . + . ID=Phyra76258.1;Parent=Phyra76258;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 96994 97101 . + 0 ID=Phyra76258;Parent=Phyra76258;rank=2 scaffold_17 . exon 96994 97101 . + . ID=Phyra76258.2;Parent=Phyra76258;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 97408 97523 . + 0 ID=Phyra76258;Parent=Phyra76258;rank=3 scaffold_17 . exon 97408 97523 . + . ID=Phyra76258.3;Parent=Phyra76258;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . exon 88735 88819 . - . ID=Phyra94438.6;Parent=Phyra94438;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_17 . exon 88923 89083 . - . ID=Phyra94438.5;Parent=Phyra94438;constitutive=1;ensembl_phase=1;rank=5 scaffold_17 . exon 89114 89399 . - . ID=Phyra94438.4;Parent=Phyra94438;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_17 . exon 89439 89637 . - . ID=Phyra94438.3;Parent=Phyra94438;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . exon 89743 89920 . - . ID=Phyra94438.2;Parent=Phyra94438;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_17 . exon 89993 90278 . - . ID=Phyra94438.1;Parent=Phyra94438;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . repeat_region 99859 108915 . ? . description=dust scaffold_17 . repeat_region 109718 109749 . ? . description=trf scaffold_17 . repeat_region 109856 109944 . ? . description=trf scaffold_17 . repeat_region 110012 110070 . ? . description=trf scaffold_17 . repeat_region 111774 111804 . ? . description=trf scaffold_17 . repeat_region 111774 111804 . ? . description=dust scaffold_17 . biological_region 112154 112156 0.999 - . logic_name=eponine scaffold_17 . biological_region 115957 115958 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 112041 113985 . + . ID=Phyra76259;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000021;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 112041 113985 . + . ID=Phyra76259;Parent=Phyra76259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 112041 112265 . + 0 ID=Phyra76259;Parent=Phyra76259;rank=1 scaffold_17 . exon 112041 112265 . + . ID=Phyra76259.1;Parent=Phyra76259;constitutive=1;rank=1 scaffold_17 . CDS 112328 112385 . + 0 ID=Phyra76259;Parent=Phyra76259;rank=2 scaffold_17 . exon 112328 112385 . + . ID=Phyra76259.2;Parent=Phyra76259;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 112470 112515 . + 0 ID=Phyra76259;Parent=Phyra76259;rank=3 scaffold_17 . exon 112470 112515 . + . ID=Phyra76259.3;Parent=Phyra76259;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_17 . CDS 112581 112648 . + 0 ID=Phyra76259;Parent=Phyra76259;rank=4 scaffold_17 . exon 112581 112648 . + . ID=Phyra76259.4;Parent=Phyra76259;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_17 . CDS 112721 112884 . + 0 ID=Phyra76259;Parent=Phyra76259;rank=5 scaffold_17 . exon 112721 112884 . + . ID=Phyra76259.5;Parent=Phyra76259;constitutive=1;ensembl_phase=1;rank=5 scaffold_17 . CDS 112962 113067 . + 0 ID=Phyra76259;Parent=Phyra76259;rank=6 scaffold_17 . exon 112962 113067 . + . ID=Phyra76259.6;Parent=Phyra76259;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_17 . CDS 113143 113237 . + 0 ID=Phyra76259;Parent=Phyra76259;rank=7 scaffold_17 . exon 113143 113237 . + . ID=Phyra76259.7;Parent=Phyra76259;constitutive=1;ensembl_phase=1;rank=7 scaffold_17 . CDS 113302 113463 . + 0 ID=Phyra76259;Parent=Phyra76259;rank=8 scaffold_17 . exon 113302 113463 . + . ID=Phyra76259.8;Parent=Phyra76259;constitutive=1;rank=8 scaffold_17 . CDS 113520 113753 . + 0 ID=Phyra76259;Parent=Phyra76259;rank=9 scaffold_17 . exon 113520 113753 . + . ID=Phyra76259.9;Parent=Phyra76259;constitutive=1;rank=9 scaffold_17 . CDS 113824 113985 . + 0 ID=Phyra76259;Parent=Phyra76259;rank=10 scaffold_17 . exon 113824 113985 . + . ID=Phyra76259.10;Parent=Phyra76259;constitutive=1;rank=10 scaffold_17 ensembl protein_coding_gene 114128 116902 . - . ID=Phyra76260;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000022;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 114128 116902 . - . ID=Phyra76260;Parent=Phyra76260;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 114128 116902 . - 0 ID=Phyra76260;Parent=Phyra76260;rank=1 scaffold_17 . exon 114128 116902 . - . ID=Phyra76260.1;Parent=Phyra76260;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 123876 142310 . + . ID=Phyra76261;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000023;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 123876 142310 . + . ID=Phyra76261;Parent=Phyra76261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 123876 142310 . + 0 ID=Phyra76261;Parent=Phyra76261;rank=1 scaffold_17 . exon 123876 142310 . + . ID=Phyra76261.1;Parent=Phyra76261;constitutive=1;rank=1 scaffold_17 . biological_region 132236 132237 0.999 + . logic_name=eponine scaffold_17 . repeat_region 135701 135751 . ? . description=trf scaffold_17 . repeat_region 139992 140037 . ? . description=dust scaffold_17 . repeat_region 144208 144260 . ? . description=dust scaffold_17 . repeat_region 147529 147734 . ? . description=dust scaffold_17 ensembl protein_coding_gene 123876 142310 . + . ID=Phyra76261;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000023;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 123876 142310 . + . ID=Phyra76261;Parent=Phyra76261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 123876 142310 . + 0 ID=Phyra76261;Parent=Phyra76261;rank=1 scaffold_17 . exon 123876 142310 . + . ID=Phyra76261.1;Parent=Phyra76261;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 142581 144264 . + . ID=Phyra76262;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000024;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 142581 144264 . + . ID=Phyra76262;Parent=Phyra76262;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 142581 143906 . + 0 ID=Phyra76262;Parent=Phyra76262;rank=1 scaffold_17 . exon 142581 143906 . + . ID=Phyra76262.1;Parent=Phyra76262;constitutive=1;rank=1 scaffold_17 . CDS 143983 144264 . + 0 ID=Phyra76262;Parent=Phyra76262;rank=2 scaffold_17 . exon 143983 144264 . + . ID=Phyra76262.2;Parent=Phyra76262;constitutive=1;rank=2 scaffold_17 ensembl protein_coding_gene 145928 146527 . - . ID=Phyra76263;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000025;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 145928 146527 . - . ID=Phyra76263;Parent=Phyra76263;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 145928 145949 . - 0 ID=Phyra76263;Parent=Phyra76263;rank=2 scaffold_17 . exon 145928 145949 . - . ID=Phyra76263.2;Parent=Phyra76263;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 146007 146527 . - 0 ID=Phyra76263;Parent=Phyra76263;rank=1 scaffold_17 . exon 146007 146527 . - . ID=Phyra76263.1;Parent=Phyra76263;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . repeat_region 150123 150148 . ? . description=trf scaffold_17 . repeat_region 150141 150191 . ? . description=trf scaffold_17 . biological_region 154679 154682 0.999 - . logic_name=eponine scaffold_17 . biological_region 155017 155022 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 150113 150759 . + . ID=Phyra76264;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000026;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 150113 150759 . + . ID=Phyra76264;Parent=Phyra76264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 150113 150461 . + 0 ID=Phyra76264;Parent=Phyra76264;rank=1 scaffold_17 . exon 150113 150461 . + . ID=Phyra76264.1;Parent=Phyra76264;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 150671 150759 . + 0 ID=Phyra76264;Parent=Phyra76264;rank=2 scaffold_17 . exon 150671 150759 . + . ID=Phyra76264.2;Parent=Phyra76264;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 ensembl protein_coding_gene 153980 154894 . - . ID=Phyra76265;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000027;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 153980 154894 . - . ID=Phyra76265;Parent=Phyra76265;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 153980 154894 . - 0 ID=Phyra76265;Parent=Phyra76265;rank=1 scaffold_17 . exon 153980 154894 . - . ID=Phyra76265.1;Parent=Phyra76265;constitutive=1;rank=1 scaffold_17 . repeat_region 166435 166447 . ? . description=dust scaffold_17 . repeat_region 167011 167060 . ? . description=dust scaffold_17 . biological_region 167425 167427 0.999 - . logic_name=eponine scaffold_17 . repeat_region 171048 171079 . ? . description=trf scaffold_17 . repeat_region 181215 181225 . ? . description=dust scaffold_17 . repeat_region 182246 182260 . ? . description=dust scaffold_17 ensembl protein_coding_gene 183193 185682 . - . ID=Phyra42910;biotype=protein_coding;external_name=gwEuk.17.86.1;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 183193 185682 . - . ID=Phyra42910;Parent=Phyra42910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 183193 185682 . - 0 ID=Phyra42910;Parent=Phyra42910;rank=1 scaffold_17 . exon 183193 185682 . - . ID=Phyra42910.1;Parent=Phyra42910;constitutive=1;rank=1 scaffold_17 . biological_region 188380 188383 0.999 + . logic_name=eponine scaffold_17 . repeat_region 189586 189609 . ? . description=trf scaffold_17 . biological_region 189679 189685 0.999 + . logic_name=eponine scaffold_17 . biological_region 191075 191080 0.999 - . logic_name=eponine scaffold_17 . biological_region 191204 191206 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 188881 189153 . - . ID=Phyra42912;biotype=protein_coding;external_name=gwEuk.17.88.1;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 188881 189153 . - . ID=Phyra42912;Parent=Phyra42912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 188881 189153 . - 0 ID=Phyra42912;Parent=Phyra42912;rank=1 scaffold_17 . exon 188881 189153 . - . ID=Phyra42912.1;Parent=Phyra42912;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 187046 187749 . + . ID=Phyra76267;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000029;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 187046 187749 . + . ID=Phyra76267;Parent=Phyra76267;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 187046 187197 . + 0 ID=Phyra76267;Parent=Phyra76267;rank=1 scaffold_17 . exon 187046 187197 . + . ID=Phyra76267.1;Parent=Phyra76267;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 187260 187749 . + 0 ID=Phyra76267;Parent=Phyra76267;rank=2 scaffold_17 . exon 187260 187749 . + . ID=Phyra76267.2;Parent=Phyra76267;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 ensembl protein_coding_gene 191106 192303 . + . ID=Phyra76269;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000031;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 191106 192303 . + . ID=Phyra76269;Parent=Phyra76269;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 191106 191192 . + 0 ID=Phyra76269;Parent=Phyra76269;rank=1 scaffold_17 . exon 191106 191192 . + . ID=Phyra76269.1;Parent=Phyra76269;constitutive=1;rank=1 scaffold_17 . CDS 191253 191324 . + 0 ID=Phyra76269;Parent=Phyra76269;rank=2 scaffold_17 . exon 191253 191324 . + . ID=Phyra76269.2;Parent=Phyra76269;constitutive=1;rank=2 scaffold_17 . CDS 191489 191814 . + 0 ID=Phyra76269;Parent=Phyra76269;rank=3 scaffold_17 . exon 191489 191814 . + . ID=Phyra76269.3;Parent=Phyra76269;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_17 . CDS 191880 192303 . + 0 ID=Phyra76269;Parent=Phyra76269;rank=4 scaffold_17 . exon 191880 192303 . + . ID=Phyra76269.4;Parent=Phyra76269;constitutive=1;ensembl_phase=2;rank=4 scaffold_17 ensembl protein_coding_gene 192407 195383 . - . ID=Phyra76270;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000032;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 192407 195383 . - . ID=Phyra76270;Parent=Phyra76270;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 192407 192659 . - 0 ID=Phyra76270;Parent=Phyra76270;rank=6 scaffold_17 . exon 192407 192659 . - . ID=Phyra76270.6;Parent=Phyra76270;constitutive=1;ensembl_phase=2;rank=6 scaffold_17 . CDS 192731 192853 . - 0 ID=Phyra76270;Parent=Phyra76270;rank=5 scaffold_17 . exon 192731 192853 . - . ID=Phyra76270.5;Parent=Phyra76270;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_17 . CDS 192914 193243 . - 0 ID=Phyra76270;Parent=Phyra76270;rank=4 scaffold_17 . exon 192914 193243 . - . ID=Phyra76270.4;Parent=Phyra76270;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_17 . CDS 193311 193378 . - 0 ID=Phyra76270;Parent=Phyra76270;rank=3 scaffold_17 . exon 193311 193378 . - . ID=Phyra76270.3;Parent=Phyra76270;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_17 . CDS 193500 194960 . - 0 ID=Phyra76270;Parent=Phyra76270;rank=2 scaffold_17 . exon 193500 194960 . - . ID=Phyra76270.2;Parent=Phyra76270;constitutive=1;rank=2 scaffold_17 . CDS 195036 195383 . - 0 ID=Phyra76270;Parent=Phyra76270;rank=1 scaffold_17 . exon 195036 195383 . - . ID=Phyra76270.1;Parent=Phyra76270;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 196110 197165 . - . ID=Phyra76271;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000033;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 196110 197165 . - . ID=Phyra76271;Parent=Phyra76271;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 196110 197165 . - 0 ID=Phyra76271;Parent=Phyra76271;rank=1 scaffold_17 . exon 196110 197165 . - . ID=Phyra76271.1;Parent=Phyra76271;constitutive=1;rank=1 scaffold_17 . repeat_region 197691 197701 . ? . description=dust scaffold_17 . repeat_region 200846 200853 . ? . description=dust scaffold_17 . repeat_region 203490 203504 . ? . description=dust scaffold_17 . repeat_region 204749 204769 . ? . description=dust scaffold_17 ensembl protein_coding_gene 198426 199559 . - . ID=Phyra76272;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000034;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 198426 199559 . - . ID=Phyra76272;Parent=Phyra76272;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 198426 198914 . - 0 ID=Phyra76272;Parent=Phyra76272;rank=2 scaffold_17 . exon 198426 198914 . - . ID=Phyra76272.2;Parent=Phyra76272;constitutive=1;rank=2 scaffold_17 . CDS 199227 199559 . - 0 ID=Phyra76272;Parent=Phyra76272;rank=1 scaffold_17 . exon 199227 199559 . - . ID=Phyra76272.1;Parent=Phyra76272;constitutive=1;rank=1 scaffold_17 . biological_region 211511 211516 0.999 + . logic_name=eponine scaffold_17 . biological_region 211851 211854 0.999 + . logic_name=eponine scaffold_17 ensembl protein_coding_gene 211546 212454 . + . ID=Phyra76273;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000035;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 211546 212454 . + . ID=Phyra76273;Parent=Phyra76273;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 211546 211552 . + 0 ID=Phyra76273;Parent=Phyra76273;rank=1 scaffold_17 . exon 211546 211552 . + . ID=Phyra76273.1;Parent=Phyra76273;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 211582 212274 . + 0 ID=Phyra76273;Parent=Phyra76273;rank=2 scaffold_17 . exon 211582 212274 . + . ID=Phyra76273.2;Parent=Phyra76273;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 212438 212454 . + 0 ID=Phyra76273;Parent=Phyra76273;rank=3 scaffold_17 . exon 212438 212454 . + . ID=Phyra76273.3;Parent=Phyra76273;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 ensembl protein_coding_gene 214930 216465 . + . ID=Phyra76274;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000036;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 214930 216465 . + . ID=Phyra76274;Parent=Phyra76274;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 214930 215314 . + 0 ID=Phyra76274;Parent=Phyra76274;rank=1 scaffold_17 . exon 214930 215314 . + . ID=Phyra76274.1;Parent=Phyra76274;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 215413 215795 . + 0 ID=Phyra76274;Parent=Phyra76274;rank=2 scaffold_17 . exon 215413 215795 . + . ID=Phyra76274.2;Parent=Phyra76274;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 215848 216465 . + 0 ID=Phyra76274;Parent=Phyra76274;rank=3 scaffold_17 . exon 215848 216465 . + . ID=Phyra76274.3;Parent=Phyra76274;constitutive=1;rank=3 scaffold_17 . repeat_region 216687 216757 . ? . description=trf scaffold_17 . repeat_region 220617 220668 . ? . description=trf scaffold_17 . repeat_region 222106 222135 . ? . description=trf scaffold_17 . repeat_region 223739 223756 . ? . description=dust scaffold_17 . repeat_region 224275 224282 . ? . description=dust scaffold_17 . repeat_region 225856 225878 . ? . description=trf scaffold_17 ensembl protein_coding_gene 217752 218807 . - . ID=Phyra76275;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000037;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 217752 218807 . - . ID=Phyra76275;Parent=Phyra76275;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 217752 218807 . - 0 ID=Phyra76275;Parent=Phyra76275;rank=1 scaffold_17 . exon 217752 218807 . - . ID=Phyra76275.1;Parent=Phyra76275;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 221689 223077 . + . ID=Phyra94440;biotype=protein_coding;external_name=C_scaffold_17000008;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 221689 223077 . + . ID=Phyra94440;Parent=Phyra94440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 221689 221929 . + 0 ID=Phyra94440;Parent=Phyra94440;rank=1 scaffold_17 . exon 221689 221929 . + . ID=Phyra94440.1;Parent=Phyra94440;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 222161 223077 . + 0 ID=Phyra94440;Parent=Phyra94440;rank=2 scaffold_17 . exon 222161 223077 . + . ID=Phyra94440.2;Parent=Phyra94440;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . biological_region 230075 230077 0.999 + . logic_name=eponine scaffold_17 . biological_region 231060 231061 0.999 + . logic_name=eponine scaffold_17 . biological_region 231075 231075 0.999 - . logic_name=eponine scaffold_17 . biological_region 231212 231213 0.999 + . logic_name=eponine scaffold_17 . biological_region 231253 231256 0.999 - . logic_name=eponine scaffold_17 . biological_region 231440 231443 0.999 - . logic_name=eponine scaffold_17 . biological_region 231492 231494 0.999 - . logic_name=eponine scaffold_17 . biological_region 231737 231739 0.999 - . logic_name=eponine scaffold_17 . biological_region 231792 231800 0.999 - . logic_name=eponine scaffold_17 . biological_region 232017 232022 0.999 - . logic_name=eponine scaffold_17 . biological_region 232072 232072 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 227624 227992 . + . ID=Phyra76277;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000039;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 227624 227992 . + . ID=Phyra76277;Parent=Phyra76277;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 227624 227992 . + 0 ID=Phyra76277;Parent=Phyra76277;rank=1 scaffold_17 . exon 227624 227992 . + . ID=Phyra76277.1;Parent=Phyra76277;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 230309 231820 . - . ID=Phyra94441;biotype=protein_coding;external_name=C_scaffold_17000009;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 230309 231820 . - . ID=Phyra94441;Parent=Phyra94441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 230309 230654 . - 0 ID=Phyra94441;Parent=Phyra94441;rank=3 scaffold_17 . exon 230309 230654 . - . ID=Phyra94441.3;Parent=Phyra94441;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 230727 231395 . - 0 ID=Phyra94441;Parent=Phyra94441;rank=2 scaffold_17 . exon 230727 231395 . - . ID=Phyra94441.2;Parent=Phyra94441;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_17 . CDS 231681 231820 . - 0 ID=Phyra94441;Parent=Phyra94441;rank=1 scaffold_17 . exon 231681 231820 . - . ID=Phyra94441.1;Parent=Phyra94441;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . repeat_region 240553 240602 . ? . description=dust scaffold_17 ensembl protein_coding_gene 236601 241976 . + . ID=Phyra76279;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000041;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 236601 241976 . + . ID=Phyra76279;Parent=Phyra76279;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 236601 236909 . + 0 ID=Phyra76279;Parent=Phyra76279;rank=1 scaffold_17 . exon 236601 236909 . + . ID=Phyra76279.1;Parent=Phyra76279;constitutive=1;rank=1 scaffold_17 . CDS 236980 239042 . + 0 ID=Phyra76279;Parent=Phyra76279;rank=2 scaffold_17 . exon 236980 239042 . + . ID=Phyra76279.2;Parent=Phyra76279;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_17 . CDS 239185 239306 . + 0 ID=Phyra76279;Parent=Phyra76279;rank=3 scaffold_17 . exon 239185 239306 . + . ID=Phyra76279.3;Parent=Phyra76279;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 239389 240510 . + 0 ID=Phyra76279;Parent=Phyra76279;rank=4 scaffold_17 . exon 239389 240510 . + . ID=Phyra76279.4;Parent=Phyra76279;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_17 . CDS 241012 241382 . + 0 ID=Phyra76279;Parent=Phyra76279;rank=5 scaffold_17 . exon 241012 241382 . + . ID=Phyra76279.5;Parent=Phyra76279;constitutive=1;ensembl_phase=1;rank=5 scaffold_17 . CDS 241677 241976 . + 0 ID=Phyra76279;Parent=Phyra76279;rank=6 scaffold_17 . exon 241677 241976 . + . ID=Phyra76279.6;Parent=Phyra76279;constitutive=1;rank=6 scaffold_17 ensembl protein_coding_gene 244735 246092 . - . ID=Phyra76280;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000042;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 244735 246092 . - . ID=Phyra76280;Parent=Phyra76280;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 244735 245009 . - 0 ID=Phyra76280;Parent=Phyra76280;rank=2 scaffold_17 . exon 244735 245009 . - . ID=Phyra76280.2;Parent=Phyra76280;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 245030 246092 . - 0 ID=Phyra76280;Parent=Phyra76280;rank=1 scaffold_17 . exon 245030 246092 . - . ID=Phyra76280.1;Parent=Phyra76280;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . biological_region 246813 246819 0.999 + . logic_name=eponine scaffold_17 . biological_region 246824 246829 0.999 + . logic_name=eponine scaffold_17 . biological_region 246921 246925 0.999 - . logic_name=eponine scaffold_17 . biological_region 254647 254649 0.999 + . logic_name=eponine scaffold_17 . biological_region 254775 254777 0.999 - . logic_name=eponine scaffold_17 . biological_region 254777 254782 0.999 + . logic_name=eponine scaffold_17 . biological_region 254820 254822 0.999 - . logic_name=eponine scaffold_17 . biological_region 254853 254854 0.999 + . logic_name=eponine scaffold_17 . biological_region 254911 254916 0.999 - . logic_name=eponine scaffold_17 . biological_region 255104 255107 0.999 - . logic_name=eponine scaffold_17 . biological_region 255225 255227 0.999 - . logic_name=eponine scaffold_17 . biological_region 255255 255260 0.999 + . logic_name=eponine scaffold_17 ensembl protein_coding_gene 246849 251313 . + . ID=Phyra76281;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000043;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 246849 251313 . + . ID=Phyra76281;Parent=Phyra76281;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 246849 250739 . + 0 ID=Phyra76281;Parent=Phyra76281;rank=1 scaffold_17 . exon 246849 250739 . + . ID=Phyra76281.1;Parent=Phyra76281;constitutive=1;rank=1 scaffold_17 . CDS 250813 251313 . + 0 ID=Phyra76281;Parent=Phyra76281;rank=2 scaffold_17 . exon 250813 251313 . + . ID=Phyra76281.2;Parent=Phyra76281;constitutive=1;rank=2 scaffold_17 ensembl protein_coding_gene 251645 252517 . - . ID=Phyra76282;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000044;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 251645 252517 . - . ID=Phyra76282;Parent=Phyra76282;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 251645 252517 . - 0 ID=Phyra76282;Parent=Phyra76282;rank=1 scaffold_17 . exon 251645 252517 . - . ID=Phyra76282.1;Parent=Phyra76282;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 254613 256256 . + . ID=Phyra76283;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000045;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 254613 256256 . + . ID=Phyra76283;Parent=Phyra76283;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 254613 255434 . + 0 ID=Phyra76283;Parent=Phyra76283;rank=1 scaffold_17 . exon 254613 255434 . + . ID=Phyra76283.1;Parent=Phyra76283;constitutive=1;rank=1 scaffold_17 . CDS 255807 256256 . + 0 ID=Phyra76283;Parent=Phyra76283;rank=2 scaffold_17 . repeat_region 255974 256010 . ? . description=trf scaffold_17 . repeat_region 264627 264645 . ? . description=dust scaffold_17 . exon 255807 256256 . + . ID=Phyra76283.2;Parent=Phyra76283;constitutive=1;rank=2 scaffold_17 ensembl protein_coding_gene 259763 264253 . - . ID=Phyra76285;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000047;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 259763 264253 . - . ID=Phyra76285;Parent=Phyra76285;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 259763 259986 . - 0 ID=Phyra76285;Parent=Phyra76285;rank=6 scaffold_17 . exon 259763 259986 . - . ID=Phyra76285.6;Parent=Phyra76285;constitutive=1;ensembl_phase=1;rank=6 scaffold_17 . CDS 260080 261788 . - 0 ID=Phyra76285;Parent=Phyra76285;rank=5 scaffold_17 . exon 260080 261788 . - . ID=Phyra76285.5;Parent=Phyra76285;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_17 . CDS 261948 263291 . - 0 ID=Phyra76285;Parent=Phyra76285;rank=4 scaffold_17 . exon 261948 263291 . - . ID=Phyra76285.4;Parent=Phyra76285;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_17 . CDS 263370 263525 . - 0 ID=Phyra76285;Parent=Phyra76285;rank=3 scaffold_17 . exon 263370 263525 . - . ID=Phyra76285.3;Parent=Phyra76285;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_17 . CDS 263599 263796 . - 0 ID=Phyra76285;Parent=Phyra76285;rank=2 scaffold_17 . exon 263599 263796 . - . ID=Phyra76285.2;Parent=Phyra76285;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_17 . CDS 263877 264253 . - 0 ID=Phyra76285;Parent=Phyra76285;rank=1 scaffold_17 . exon 263877 264253 . - . ID=Phyra76285.1;Parent=Phyra76285;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 265569 266447 . + . ID=Phyra76286;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000048;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 265569 266447 . + . ID=Phyra76286;Parent=Phyra76286;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 265569 266447 . + 0 ID=Phyra76286;Parent=Phyra76286;rank=1 scaffold_17 . exon 265569 266447 . + . ID=Phyra76286.1;Parent=Phyra76286;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 258014 259690 . + . ID=Phyra94446;biotype=protein_coding;external_name=C_scaffold_17000014;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 258014 259690 . + . ID=Phyra94446;Parent=Phyra94446;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 258014 259690 . + 0 ID=Phyra94446;Parent=Phyra94446;rank=1 scaffold_17 . exon 258014 259690 . + . ID=Phyra94446.1;Parent=Phyra94446;constitutive=1;rank=1 scaffold_17 . biological_region 265715 265721 0.999 + . logic_name=eponine scaffold_17 . biological_region 265776 265780 0.999 - . logic_name=eponine scaffold_17 . biological_region 266765 266768 0.999 - . logic_name=eponine scaffold_17 . biological_region 267173 267179 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 271861 272034 . + . ID=Phyra42830;biotype=protein_coding;external_name=gwEuk.17.6.1;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 271861 272034 . + . ID=Phyra42830;Parent=Phyra42830;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 271861 272034 . + 0 ID=Phyra42830;Parent=Phyra42830;rank=1 scaffold_17 . exon 271861 272034 . + . ID=Phyra42830.1;Parent=Phyra42830;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 266986 268747 . - . ID=Phyra76287;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000049;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 266986 268747 . - . ID=Phyra76287;Parent=Phyra76287;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 266986 268389 . - 0 ID=Phyra76287;Parent=Phyra76287;rank=2 scaffold_17 . exon 266986 268389 . - . ID=Phyra76287.2;Parent=Phyra76287;constitutive=1;rank=2 scaffold_17 . CDS 268460 268747 . - 0 ID=Phyra76287;Parent=Phyra76287;rank=1 scaffold_17 . exon 268460 268747 . - . ID=Phyra76287.1;Parent=Phyra76287;constitutive=1;rank=1 scaffold_17 . repeat_region 277896 277944 . ? . description=dust scaffold_17 . repeat_region 277905 277926 . ? . description=trf scaffold_17 . repeat_region 278827 278860 . ? . description=trf scaffold_17 . repeat_region 279864 279895 . ? . description=trf scaffold_17 . repeat_region 280883 280890 . ? . description=dust scaffold_17 . repeat_region 285092 285099 . ? . description=dust scaffold_17 ensembl protein_coding_gene 277260 278660 . + . ID=Phyra76288;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000050;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 277260 278660 . + . ID=Phyra76288;Parent=Phyra76288;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 277260 278660 . + 0 ID=Phyra76288;Parent=Phyra76288;rank=1 scaffold_17 . exon 277260 278660 . + . ID=Phyra76288.1;Parent=Phyra76288;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 278771 279550 . + . ID=Phyra76289;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000051;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 278771 279550 . + . ID=Phyra76289;Parent=Phyra76289;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 278771 279550 . + 0 ID=Phyra76289;Parent=Phyra76289;rank=1 scaffold_17 . exon 278771 279550 . + . ID=Phyra76289.1;Parent=Phyra76289;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 279625 280314 . - . ID=Phyra76290;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000052;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 279625 280314 . - . ID=Phyra76290;Parent=Phyra76290;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 279625 280314 . - 0 ID=Phyra76290;Parent=Phyra76290;rank=1 scaffold_17 . exon 279625 280314 . - . ID=Phyra76290.1;Parent=Phyra76290;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 283696 285668 . - . ID=Phyra76291;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000053;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 283696 285668 . - . ID=Phyra76291;Parent=Phyra76291;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 283696 285050 . - 0 ID=Phyra76291;Parent=Phyra76291;rank=2 scaffold_17 . exon 283696 285050 . - . ID=Phyra76291.2;Parent=Phyra76291;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 285119 285668 . - 0 ID=Phyra76291;Parent=Phyra76291;rank=1 scaffold_17 . exon 285119 285668 . - . ID=Phyra76291.1;Parent=Phyra76291;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . biological_region 292757 292761 0.999 + . logic_name=eponine scaffold_17 ensembl protein_coding_gene 287341 288183 . - . ID=Phyra76292;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000054;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 287341 288183 . - . ID=Phyra76292;Parent=Phyra76292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 287341 288183 . - 0 ID=Phyra76292;Parent=Phyra76292;rank=1 scaffold_17 . exon 287341 288183 . - . ID=Phyra76292.1;Parent=Phyra76292;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 292417 293307 . + . ID=Phyra76293;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000055;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 292417 293307 . + . ID=Phyra76293;Parent=Phyra76293;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 292417 292487 . + 0 ID=Phyra76293;Parent=Phyra76293;rank=1 scaffold_17 . exon 292417 292487 . + . ID=Phyra76293.1;Parent=Phyra76293;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 292650 293251 . + 0 ID=Phyra76293;Parent=Phyra76293;rank=2 scaffold_17 . exon 292650 293251 . + . ID=Phyra76293.2;Parent=Phyra76293;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 293297 293307 . + 0 ID=Phyra76293;Parent=Phyra76293;rank=3 scaffold_17 . exon 293297 293307 . + . ID=Phyra76293.3;Parent=Phyra76293;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . repeat_region 302102 302141 . ? . description=dust scaffold_17 ensembl protein_coding_gene 299242 300664 . + . ID=Phyra71408;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_17000005;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 299242 300664 . + . ID=Phyra71408;Parent=Phyra71408;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 299242 300093 . + 0 ID=Phyra71408;Parent=Phyra71408;rank=1 scaffold_17 . exon 299242 300093 . + . ID=Phyra71408.1;Parent=Phyra71408;constitutive=1;rank=1 scaffold_17 . CDS 300164 300664 . + 0 ID=Phyra71408;Parent=Phyra71408;rank=2 scaffold_17 . exon 300164 300664 . + . ID=Phyra71408.2;Parent=Phyra71408;constitutive=1;rank=2 scaffold_17 ensembl protein_coding_gene 295685 297121 . - . ID=Phyra76294;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000056;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 295685 297121 . - . ID=Phyra76294;Parent=Phyra76294;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 295685 297121 . - 0 ID=Phyra76294;Parent=Phyra76294;rank=1 scaffold_17 . exon 295685 297121 . - . ID=Phyra76294.1;Parent=Phyra76294;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 301749 302282 . + . ID=Phyra76296;biotype=protein_coding;description=Elicitin-like protein RAL11A [Source:UniProtKB/TrEMBL%3BAcc:Q2N0D5];external_name=fgenesh1_pg.C_scaffold_17000058;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 301749 302282 . + . ID=Phyra76296;Parent=Phyra76296;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 301749 302282 . + 0 ID=Phyra76296;Parent=Phyra76296;rank=1 scaffold_17 . exon 301749 302282 . + . ID=Phyra76296.1;Parent=Phyra76296;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 302401 302943 . - . ID=Phyra76297;biotype=protein_coding;description=Elicitin-like protein RAL11B [Source:UniProtKB/TrEMBL%3BAcc:Q2N0D4];external_name=fgenesh1_pg.C_scaffold_17000059;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 302401 302943 . - . ID=Phyra76297;Parent=Phyra76297;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 302401 302943 . - 0 ID=Phyra76297;Parent=Phyra76297;rank=1 scaffold_17 . exon 302401 302943 . - . ID=Phyra76297.1;Parent=Phyra76297;constitutive=1;rank=1 scaffold_17 . biological_region 307132 307133 0.999 + . logic_name=eponine scaffold_17 . biological_region 307263 307265 0.999 - . logic_name=eponine scaffold_17 . biological_region 307276 307279 0.999 + . logic_name=eponine scaffold_17 . biological_region 307655 307656 0.999 + . logic_name=eponine scaffold_17 . biological_region 308002 308003 0.999 + . logic_name=eponine scaffold_17 . repeat_region 309505 309564 . ? . description=trf scaffold_17 . biological_region 309806 309808 0.999 + . logic_name=eponine scaffold_17 . biological_region 309900 309904 0.999 + . logic_name=eponine scaffold_17 . repeat_region 310309 310335 . ? . description=trf scaffold_17 . biological_region 310946 310953 0.999 - . logic_name=eponine scaffold_17 . biological_region 311073 311076 0.999 - . logic_name=eponine scaffold_17 . biological_region 311149 311150 0.999 - . logic_name=eponine scaffold_17 . biological_region 313124 313125 0.999 + . logic_name=eponine scaffold_17 . biological_region 313523 313524 0.999 - . logic_name=eponine scaffold_17 . biological_region 314459 314464 0.999 + . logic_name=eponine scaffold_17 . biological_region 314502 314505 0.999 + . logic_name=eponine scaffold_17 ensembl protein_coding_gene 305588 306319 . - . ID=Phyra76298;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000060;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 305588 306319 . - . ID=Phyra76298;Parent=Phyra76298;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 305588 306319 . - 0 ID=Phyra76298;Parent=Phyra76298;rank=1 scaffold_17 . exon 305588 306319 . - . ID=Phyra76298.1;Parent=Phyra76298;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 309406 310401 . - . ID=Phyra76299;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000061;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 309406 310401 . - . ID=Phyra76299;Parent=Phyra76299;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 309406 310401 . - 0 ID=Phyra76299;Parent=Phyra76299;rank=1 scaffold_17 . exon 309406 310401 . - . ID=Phyra76299.1;Parent=Phyra76299;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 311762 312568 . - . ID=Phyra76300;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000062;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 311762 312568 . - . ID=Phyra76300;Parent=Phyra76300;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 311762 312568 . - 0 ID=Phyra76300;Parent=Phyra76300;rank=1 scaffold_17 . exon 311762 312568 . - . ID=Phyra76300.1;Parent=Phyra76300;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 314292 316466 . - . ID=Phyra76301;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000063;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 314292 316466 . - . ID=Phyra76301;Parent=Phyra76301;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 314292 316466 . - 0 ID=Phyra76301;Parent=Phyra76301;rank=1 scaffold_17 . exon 314292 316466 . - . ID=Phyra76301.1;Parent=Phyra76301;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 317373 319625 . - . ID=Phyra76302;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000064;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 317373 319625 . - . ID=Phyra76302;Parent=Phyra76302;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 317373 319625 . - 0 ID=Phyra76302;Parent=Phyra76302;rank=1 scaffold_17 . exon 317373 319625 . - . ID=Phyra76302.1;Parent=Phyra76302;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 320736 322925 . + . ID=Phyra76303;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000065;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 320736 322925 . + . ID=Phyra76303;Parent=Phyra76303;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 320736 322925 . + 0 ID=Phyra76303;Parent=Phyra76303;rank=1 scaffold_17 . exon 320736 322925 . + . ID=Phyra76303.1;Parent=Phyra76303;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 323454 325682 . + . ID=Phyra76304;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000066;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 323454 325682 . + . ID=Phyra76304;Parent=Phyra76304;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 323454 325682 . + 0 ID=Phyra76304;Parent=Phyra76304;rank=1 scaffold_17 . exon 323454 325682 . + . ID=Phyra76304.1;Parent=Phyra76304;constitutive=1;rank=1 scaffold_17 . biological_region 325963 325967 0.999 + . logic_name=eponine scaffold_17 . biological_region 326022 326023 0.999 + . logic_name=eponine scaffold_17 . biological_region 326403 326405 0.999 + . logic_name=eponine scaffold_17 . biological_region 327321 327326 0.999 + . logic_name=eponine scaffold_17 . biological_region 327371 327375 0.999 - . logic_name=eponine scaffold_17 . repeat_region 332990 332997 . ? . description=dust scaffold_17 . repeat_region 333090 333139 . ? . description=dust scaffold_17 ensembl protein_coding_gene 325932 327431 . - . ID=Phyra76305;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000067;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 325932 327431 . - . ID=Phyra76305;Parent=Phyra76305;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 325932 327431 . - 0 ID=Phyra76305;Parent=Phyra76305;rank=1 scaffold_17 . exon 325932 327431 . - . ID=Phyra76305.1;Parent=Phyra76305;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 331460 332611 . - . ID=Phyra76306;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000068;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 331460 332611 . - . ID=Phyra76306;Parent=Phyra76306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 331460 332611 . - 0 ID=Phyra76306;Parent=Phyra76306;rank=1 scaffold_17 . exon 331460 332611 . - . ID=Phyra76306.1;Parent=Phyra76306;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 335136 336285 . + . ID=Phyra76307;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000069;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 335136 336285 . + . ID=Phyra76307;Parent=Phyra76307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 335136 335199 . + 0 ID=Phyra76307;Parent=Phyra76307;rank=1 scaffold_17 . exon 335136 335199 . + . ID=Phyra76307.1;Parent=Phyra76307;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 335254 335673 . + 0 ID=Phyra76307;Parent=Phyra76307;rank=2 scaffold_17 . exon 335254 335673 . + . ID=Phyra76307.2;Parent=Phyra76307;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 335729 336285 . + 0 ID=Phyra76307;Parent=Phyra76307;rank=3 scaffold_17 . exon 335729 336285 . + . ID=Phyra76307.3;Parent=Phyra76307;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 ensembl protein_coding_gene 340011 340680 . + . ID=Phyra76308;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000070;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 340011 340680 . + . ID=Phyra76308;Parent=Phyra76308;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 340011 340609 . + 0 ID=Phyra76308;Parent=Phyra76308;rank=1 scaffold_17 . exon 340011 340609 . + . ID=Phyra76308.1;Parent=Phyra76308;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 340659 340680 . + 0 ID=Phyra76308;Parent=Phyra76308;rank=2 scaffold_17 . exon 340659 340680 . + . ID=Phyra76308.2;Parent=Phyra76308;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . repeat_region 348090 348139 . ? . description=dust scaffold_17 . repeat_region 348540 348547 . ? . description=dust scaffold_17 . repeat_region 351549 351556 . ? . description=dust scaffold_17 . biological_region 353597 353599 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 345665 345862 . - . ID=Phyra42838;biotype=protein_coding;external_name=gwEuk.17.14.1;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 345665 345862 . - . ID=Phyra42838;Parent=Phyra42838;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 345665 345862 . - 0 ID=Phyra42838;Parent=Phyra42838;rank=1 scaffold_17 . exon 345665 345862 . - . ID=Phyra42838.1;Parent=Phyra42838;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 349911 353061 . + . ID=Phyra76309;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000071;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 349911 353061 . + . ID=Phyra76309;Parent=Phyra76309;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 349911 350575 . + 0 ID=Phyra76309;Parent=Phyra76309;rank=1 scaffold_17 . exon 349911 350575 . + . ID=Phyra76309.1;Parent=Phyra76309;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 350922 351412 . + 0 ID=Phyra76309;Parent=Phyra76309;rank=2 scaffold_17 . exon 350922 351412 . + . ID=Phyra76309.2;Parent=Phyra76309;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 351689 352560 . + 0 ID=Phyra76309;Parent=Phyra76309;rank=3 scaffold_17 . exon 351689 352560 . + . ID=Phyra76309.3;Parent=Phyra76309;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 352634 352734 . + 0 ID=Phyra76309;Parent=Phyra76309;rank=4 scaffold_17 . exon 352634 352734 . + . ID=Phyra76309.4;Parent=Phyra76309;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_17 . CDS 352812 353061 . + 0 ID=Phyra76309;Parent=Phyra76309;rank=5 scaffold_17 . exon 352812 353061 . + . ID=Phyra76309.5;Parent=Phyra76309;constitutive=1;ensembl_phase=2;rank=5 scaffold_17 ensembl protein_coding_gene 353197 353520 . - . ID=Phyra76310;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000072;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 353197 353520 . - . ID=Phyra76310;Parent=Phyra76310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 353197 353520 . - 0 ID=Phyra76310;Parent=Phyra76310;rank=1 scaffold_17 . exon 353197 353520 . - . ID=Phyra76310.1;Parent=Phyra76310;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 354285 356135 . + . ID=Phyra76311;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000073;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 354285 356135 . + . ID=Phyra76311;Parent=Phyra76311;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 354285 356135 . + 0 ID=Phyra76311;Parent=Phyra76311;rank=1 scaffold_17 . exon 354285 356135 . + . ID=Phyra76311.1;Parent=Phyra76311;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 357598 365116 . - . ID=Phyra76312;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000074;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 357598 365116 . - . ID=Phyra76312;Parent=Phyra76312;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 357598 359831 . - 0 ID=Phyra76312;Parent=Phyra76312;rank=3 scaffold_17 . exon 357598 359831 . - . ID=Phyra76312.3;Parent=Phyra76312;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 360576 362502 . - 0 ID=Phyra76312;Parent=Phyra76312;rank=2 scaffold_17 . exon 360576 362502 . - . ID=Phyra76312.2;Parent=Phyra76312;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 363035 365116 . - 0 ID=Phyra76312;Parent=Phyra76312;rank=1 scaffold_17 . exon 363035 365116 . - . ID=Phyra76312.1;Parent=Phyra76312;constitutive=1;rank=1 scaffold_17 . repeat_region 366086 366461 . ? . description=dust scaffold_17 . biological_region 371621 371625 0.999 + . logic_name=eponine scaffold_17 . biological_region 371622 371622 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 365774 368489 . - . ID=Phyra76313;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000075;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 365774 368489 . - . ID=Phyra76313;Parent=Phyra76313;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 365774 365808 . - 0 ID=Phyra76313;Parent=Phyra76313;rank=2 scaffold_17 . exon 365774 365808 . - . ID=Phyra76313.2;Parent=Phyra76313;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 366569 368489 . - 0 ID=Phyra76313;Parent=Phyra76313;rank=1 scaffold_17 . exon 366569 368489 . - . ID=Phyra76313.1;Parent=Phyra76313;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 370669 372948 . + . ID=Phyra76314;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000076;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 370669 372948 . + . ID=Phyra76314;Parent=Phyra76314;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 370669 372948 . + 0 ID=Phyra76314;Parent=Phyra76314;rank=1 scaffold_17 . exon 370669 372948 . + . ID=Phyra76314.1;Parent=Phyra76314;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 373321 375594 . - . ID=Phyra76315;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000077;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 373321 375594 . - . ID=Phyra76315;Parent=Phyra76315;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 373321 375594 . - 0 ID=Phyra76315;Parent=Phyra76315;rank=1 scaffold_17 . exon 373321 375594 . - . ID=Phyra76315.1;Parent=Phyra76315;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 378542 380439 . - . ID=Phyra76316;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000078;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 378542 380439 . - . ID=Phyra76316;Parent=Phyra76316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 378542 378550 . - 0 ID=Phyra76316;Parent=Phyra76316;rank=2 scaffold_17 . exon 378542 378550 . - . ID=Phyra76316.2;Parent=Phyra76316;constitutive=1;rank=2 scaffold_17 . CDS 378769 380439 . - 0 ID=Phyra76316;Parent=Phyra76316;rank=1 scaffold_17 . exon 378769 380439 . - . ID=Phyra76316.1;Parent=Phyra76316;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 381593 383554 . - . ID=Phyra76317;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000079;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 381593 383554 . - . ID=Phyra76317;Parent=Phyra76317;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 381593 383554 . - 0 ID=Phyra76317;Parent=Phyra76317;rank=1 scaffold_17 . exon 381593 383554 . - . ID=Phyra76317.1;Parent=Phyra76317;constitutive=1;rank=1 scaffold_17 . repeat_region 385550 385571 . ? . description=trf scaffold_17 . biological_region 388624 388628 0.999 + . logic_name=eponine scaffold_17 . biological_region 390224 390226 0.999 + . logic_name=eponine scaffold_17 . biological_region 393054 393055 0.999 + . logic_name=eponine scaffold_17 ensembl protein_coding_gene 384177 390626 . - . ID=Phyra76318;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000080;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 384177 390626 . - . ID=Phyra76318;Parent=Phyra76318;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 384177 384448 . - 0 ID=Phyra76318;Parent=Phyra76318;rank=7 scaffold_17 . exon 384177 384448 . - . ID=Phyra76318.7;Parent=Phyra76318;constitutive=1;ensembl_phase=1;rank=7 scaffold_17 . CDS 384510 384569 . - 0 ID=Phyra76318;Parent=Phyra76318;rank=6 scaffold_17 . exon 384510 384569 . - . ID=Phyra76318.6;Parent=Phyra76318;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_17 . CDS 384628 385075 . - 0 ID=Phyra76318;Parent=Phyra76318;rank=5 scaffold_17 . exon 384628 385075 . - . ID=Phyra76318.5;Parent=Phyra76318;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_17 . CDS 385157 385547 . - 0 ID=Phyra76318;Parent=Phyra76318;rank=4 scaffold_17 . exon 385157 385547 . - . ID=Phyra76318.4;Parent=Phyra76318;constitutive=1;ensembl_phase=2;rank=4 scaffold_17 . CDS 385620 385642 . - 0 ID=Phyra76318;Parent=Phyra76318;rank=3 scaffold_17 . exon 385620 385642 . - . ID=Phyra76318.3;Parent=Phyra76318;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_17 . CDS 385819 388356 . - 0 ID=Phyra76318;Parent=Phyra76318;rank=2 scaffold_17 . exon 385819 388356 . - . ID=Phyra76318.2;Parent=Phyra76318;constitutive=1;rank=2 scaffold_17 . CDS 388425 390626 . - 0 ID=Phyra76318;Parent=Phyra76318;rank=1 scaffold_17 . exon 388425 390626 . - . ID=Phyra76318.1;Parent=Phyra76318;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 391211 393445 . - . ID=Phyra76319;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000081;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 391211 393445 . - . ID=Phyra76319;Parent=Phyra76319;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 391211 393445 . - 0 ID=Phyra76319;Parent=Phyra76319;rank=1 scaffold_17 . exon 391211 393445 . - . ID=Phyra76319.1;Parent=Phyra76319;constitutive=1;rank=1 scaffold_17 . repeat_region 397701 397714 . ? . description=dust scaffold_17 . repeat_region 398144 398165 . ? . description=dust scaffold_17 . repeat_region 402221 402230 . ? . description=dust scaffold_17 . repeat_region 402339 402346 . ? . description=dust scaffold_17 . repeat_region 402809 402821 . ? . description=dust scaffold_17 ensembl protein_coding_gene 399184 399999 . - . ID=Phyra42843;biotype=protein_coding;external_name=gwEuk.17.19.1;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 399184 399999 . - . ID=Phyra42843;Parent=Phyra42843;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 399184 399999 . - 0 ID=Phyra42843;Parent=Phyra42843;rank=1 scaffold_17 . exon 399184 399999 . - . ID=Phyra42843.1;Parent=Phyra42843;constitutive=1;rank=1 scaffold_17 ensembl pseudogene 400247 400755 . - . ID=Phyra42847;biotype=pseudogene;external_name=gwEuk.17.23.1;logic_name=jgi_phyra1 scaffold_17 ensembl pseudogene 400247 400755 . - . ID=Phyra42847;Parent=Phyra42847;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_17 . exon 400247 400755 . - . ID=Phyra42847.1;Parent=Phyra42847;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 393748 396012 . - . ID=Phyra76320;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000082;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 393748 396012 . - . ID=Phyra76320;Parent=Phyra76320;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 393748 396012 . - 0 ID=Phyra76320;Parent=Phyra76320;rank=1 scaffold_17 . exon 393748 396012 . - . ID=Phyra76320.1;Parent=Phyra76320;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 397000 398542 . - . ID=Phyra76321;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000083;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 397000 398542 . - . ID=Phyra76321;Parent=Phyra76321;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 397000 397689 . - 0 ID=Phyra76321;Parent=Phyra76321;rank=6 scaffold_17 . exon 397000 397689 . - . ID=Phyra76321.6;Parent=Phyra76321;constitutive=1;rank=6 scaffold_17 . CDS 397765 397833 . - 0 ID=Phyra76321;Parent=Phyra76321;rank=5 scaffold_17 . exon 397765 397833 . - . ID=Phyra76321.5;Parent=Phyra76321;constitutive=1;rank=5 scaffold_17 . CDS 397897 397977 . - 0 ID=Phyra76321;Parent=Phyra76321;rank=4 scaffold_17 . exon 397897 397977 . - . ID=Phyra76321.4;Parent=Phyra76321;constitutive=1;rank=4 scaffold_17 . CDS 398048 398167 . - 0 ID=Phyra76321;Parent=Phyra76321;rank=3 scaffold_17 . exon 398048 398167 . - . ID=Phyra76321.3;Parent=Phyra76321;constitutive=1;rank=3 scaffold_17 . CDS 398222 398327 . - 0 ID=Phyra76321;Parent=Phyra76321;rank=2 scaffold_17 . exon 398222 398327 . - . ID=Phyra76321.2;Parent=Phyra76321;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 398409 398542 . - 0 ID=Phyra76321;Parent=Phyra76321;rank=1 scaffold_17 . exon 398409 398542 . - . ID=Phyra76321.1;Parent=Phyra76321;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . biological_region 403918 403920 0.999 - . logic_name=eponine scaffold_17 . repeat_region 408467 408516 . ? . description=trf scaffold_17 . biological_region 408970 408974 0.999 + . logic_name=eponine scaffold_17 . biological_region 409097 409097 0.999 - . logic_name=eponine scaffold_17 ensembl pseudogenic_tRNA 406587 406659 . - . ID=EPrPRAG00000000135;biotype=tRNA_pseudogene;description=tRNA-Lys for anticodon UUU [Source:TRNASCAN_SE%3BAcc:tRNA-Lys];external_name=tRNA-Lys;logic_name=ncrna_eg scaffold_17 ensembl transcript 406587 406659 . - . ID=EPrPRAT00000000135;Parent=EPrPRAG00000000135;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_17 . exon 406587 406659 . - . ID=EPrPRAE00000000135;Parent=EPrPRAT00000000135;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 405714 406172 . - . ID=Phyra76323;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000085;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 405714 406172 . - . ID=Phyra76323;Parent=Phyra76323;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 405714 406172 . - 0 ID=Phyra76323;Parent=Phyra76323;rank=1 scaffold_17 . exon 405714 406172 . - . ID=Phyra76323.1;Parent=Phyra76323;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 409639 409977 . + . ID=Phyra76324;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000086;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 409639 409977 . + . ID=Phyra76324;Parent=Phyra76324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 409639 409977 . + 0 ID=Phyra76324;Parent=Phyra76324;rank=1 scaffold_17 . exon 409639 409977 . + . ID=Phyra76324.1;Parent=Phyra76324;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 410972 413598 . - . ID=Phyra76325;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000087;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 410972 413598 . - . ID=Phyra76325;Parent=Phyra76325;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 410972 412001 . - 0 ID=Phyra76325;Parent=Phyra76325;rank=2 scaffold_17 . exon 410972 412001 . - . ID=Phyra76325.2;Parent=Phyra76325;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 412079 413598 . - 0 ID=Phyra76325;Parent=Phyra76325;rank=1 scaffold_17 . exon 412079 413598 . - . ID=Phyra76325.1;Parent=Phyra76325;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . repeat_region 414575 414628 . ? . description=dust scaffold_17 . repeat_region 415087 415142 . ? . description=dust scaffold_17 . repeat_region 415147 415191 . ? . description=dust scaffold_17 ensembl protein_coding_gene 413799 415685 . + . ID=Phyra76326;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000088;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 413799 415685 . + . ID=Phyra76326;Parent=Phyra76326;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 413799 413844 . + 0 ID=Phyra76326;Parent=Phyra76326;rank=1 scaffold_17 . exon 413799 413844 . + . ID=Phyra76326.1;Parent=Phyra76326;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 413968 415685 . + 0 ID=Phyra76326;Parent=Phyra76326;rank=2 scaffold_17 . exon 413968 415685 . + . ID=Phyra76326.2;Parent=Phyra76326;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . biological_region 425003 425009 0.999 + . logic_name=eponine scaffold_17 . biological_region 425081 425086 0.999 + . logic_name=eponine scaffold_17 . repeat_region 425770 425922 . ? . description=trf scaffold_17 . biological_region 427881 427881 0.999 + . logic_name=eponine scaffold_17 . biological_region 428560 428561 0.999 - . logic_name=eponine scaffold_17 . biological_region 430756 430758 0.999 + . logic_name=eponine scaffold_17 . repeat_region 432016 432050 . ? . description=trf scaffold_17 ensembl protein_coding_gene 424102 425199 . - . ID=Phyra76327;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000089;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 424102 425199 . - . ID=Phyra76327;Parent=Phyra76327;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 424102 424110 . - 0 ID=Phyra76327;Parent=Phyra76327;rank=5 scaffold_17 . exon 424102 424110 . - . ID=Phyra76327.5;Parent=Phyra76327;constitutive=1;rank=5 scaffold_17 . CDS 424230 424411 . - 0 ID=Phyra76327;Parent=Phyra76327;rank=4 scaffold_17 . exon 424230 424411 . - . ID=Phyra76327.4;Parent=Phyra76327;constitutive=1;ensembl_phase=1;rank=4 scaffold_17 . CDS 424475 424678 . - 0 ID=Phyra76327;Parent=Phyra76327;rank=3 scaffold_17 . exon 424475 424678 . - . ID=Phyra76327.3;Parent=Phyra76327;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 424745 424807 . - 0 ID=Phyra76327;Parent=Phyra76327;rank=2 scaffold_17 . exon 424745 424807 . - . ID=Phyra76327.2;Parent=Phyra76327;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 424872 425199 . - 0 ID=Phyra76327;Parent=Phyra76327;rank=1 scaffold_17 . exon 424872 425199 . - . ID=Phyra76327.1;Parent=Phyra76327;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 425350 427037 . + . ID=Phyra76328;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000090;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 425350 427037 . + . ID=Phyra76328;Parent=Phyra76328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 425350 426042 . + 0 ID=Phyra76328;Parent=Phyra76328;rank=1 scaffold_17 . exon 425350 426042 . + . ID=Phyra76328.1;Parent=Phyra76328;constitutive=1;rank=1 scaffold_17 . CDS 426297 427037 . + 0 ID=Phyra76328;Parent=Phyra76328;rank=2 scaffold_17 . exon 426297 427037 . + . ID=Phyra76328.2;Parent=Phyra76328;constitutive=1;rank=2 scaffold_17 ensembl protein_coding_gene 427883 429559 . + . ID=Phyra76329;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000091;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 427883 429559 . + . ID=Phyra76329;Parent=Phyra76329;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 427883 429559 . + 0 ID=Phyra76329;Parent=Phyra76329;rank=1 scaffold_17 . exon 427883 429559 . + . ID=Phyra76329.1;Parent=Phyra76329;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 430089 431742 . + . ID=Phyra76330;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000092;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 430089 431742 . + . ID=Phyra76330;Parent=Phyra76330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 430089 431366 . + 0 ID=Phyra76330;Parent=Phyra76330;rank=1 scaffold_17 . exon 430089 431366 . + . ID=Phyra76330.1;Parent=Phyra76330;constitutive=1;rank=1 scaffold_17 . CDS 431416 431742 . + 0 ID=Phyra76330;Parent=Phyra76330;rank=2 scaffold_17 . exon 431416 431742 . + . ID=Phyra76330.2;Parent=Phyra76330;constitutive=1;rank=2 scaffold_17 ensembl protein_coding_gene 432174 433688 . - . ID=Phyra76331;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000093;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 432174 433688 . - . ID=Phyra76331;Parent=Phyra76331;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 432174 433688 . - 0 ID=Phyra76331;Parent=Phyra76331;rank=1 scaffold_17 . exon 432174 433688 . - . ID=Phyra76331.1;Parent=Phyra76331;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 434031 435497 . - . ID=Phyra76332;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000094;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 434031 435497 . - . ID=Phyra76332;Parent=Phyra76332;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 434031 435497 . - 0 ID=Phyra76332;Parent=Phyra76332;rank=1 scaffold_17 . exon 434031 435497 . - . ID=Phyra76332.1;Parent=Phyra76332;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 436603 438228 . + . ID=Phyra76333;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000095;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 436603 438228 . + . ID=Phyra76333;Parent=Phyra76333;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 436603 438228 . + 0 ID=Phyra76333;Parent=Phyra76333;rank=1 scaffold_17 . exon 436603 438228 . + . ID=Phyra76333.1;Parent=Phyra76333;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 440663 442528 . + . ID=Phyra94454;biotype=protein_coding;external_name=C_scaffold_17000022;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 440663 442528 . + . ID=Phyra94454;Parent=Phyra94454;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 440663 441142 . + 0 ID=Phyra94454;Parent=Phyra94454;rank=1 scaffold_17 . exon 440663 441142 . + . ID=Phyra94454.1;Parent=Phyra94454;constitutive=1;rank=1 scaffold_17 . CDS 441623 441875 . + 0 ID=Phyra94454;Parent=Phyra94454;rank=2 scaffold_17 . exon 441623 441875 . + . ID=Phyra94454.2;Parent=Phyra94454;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 441950 442426 . + 0 ID=Phyra94454;Parent=Phyra94454;rank=3 scaffold_17 . exon 441950 442426 . + . ID=Phyra94454.3;Parent=Phyra94454;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 442470 442528 . + 0 ID=Phyra94454;Parent=Phyra94454;rank=4 scaffold_17 . exon 442470 442528 . + . ID=Phyra94454.4;Parent=Phyra94454;constitutive=1;ensembl_phase=1;rank=4 scaffold_17 . biological_region 450941 450945 0.999 - . logic_name=eponine scaffold_17 . biological_region 451020 451023 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 447052 451113 . + . ID=Phyra94455;biotype=protein_coding;external_name=C_scaffold_17000023;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 447052 451113 . + . ID=Phyra94455;Parent=Phyra94455;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 447052 447283 . + 0 ID=Phyra94455;Parent=Phyra94455;rank=1 scaffold_17 . exon 447052 447283 . + . ID=Phyra94455.1;Parent=Phyra94455;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 447323 447613 . + 0 ID=Phyra94455;Parent=Phyra94455;rank=2 scaffold_17 . exon 447323 447613 . + . ID=Phyra94455.2;Parent=Phyra94455;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 447656 448162 . + 0 ID=Phyra94455;Parent=Phyra94455;rank=3 scaffold_17 . exon 447656 448162 . + . ID=Phyra94455.3;Parent=Phyra94455;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 448292 448486 . + 0 ID=Phyra94455;Parent=Phyra94455;rank=4 scaffold_17 . exon 448292 448486 . + . ID=Phyra94455.4;Parent=Phyra94455;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_17 . CDS 448509 448540 . + 0 ID=Phyra94455;Parent=Phyra94455;rank=5 scaffold_17 . exon 448509 448540 . + . ID=Phyra94455.5;Parent=Phyra94455;constitutive=1;ensembl_phase=1;rank=5 scaffold_17 . CDS 448741 448865 . + 0 ID=Phyra94455;Parent=Phyra94455;rank=6 scaffold_17 . exon 448741 448865 . + . ID=Phyra94455.6;Parent=Phyra94455;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_17 . CDS 448908 449077 . + 0 ID=Phyra94455;Parent=Phyra94455;rank=7 scaffold_17 . exon 448908 449077 . + . ID=Phyra94455.7;Parent=Phyra94455;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_17 . CDS 449231 449870 . + 0 ID=Phyra94455;Parent=Phyra94455;rank=8 scaffold_17 . exon 449231 449870 . + . ID=Phyra94455.8;Parent=Phyra94455;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_17 . CDS 450006 450154 . + 0 ID=Phyra94455;Parent=Phyra94455;rank=9 scaffold_17 . exon 450006 450154 . + . ID=Phyra94455.9;Parent=Phyra94455;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_17 . CDS 450224 451113 . + 0 ID=Phyra94455;Parent=Phyra94455;rank=10 scaffold_17 . exon 450224 451113 . + . ID=Phyra94455.10;Parent=Phyra94455;constitutive=1;ensembl_phase=1;rank=10 scaffold_17 . repeat_region 458094 458113 . ? . description=trf scaffold_17 . repeat_region 461613 461627 . ? . description=dust scaffold_17 . biological_region 470018 470018 0.999 + . logic_name=eponine scaffold_17 . biological_region 470049 470050 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 469899 470699 . + . ID=Phyra71409;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_17000006;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 469899 470699 . + . ID=Phyra71409;Parent=Phyra71409;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 469899 470699 . + 0 ID=Phyra71409;Parent=Phyra71409;rank=1 scaffold_17 . exon 469899 470699 . + . ID=Phyra71409.1;Parent=Phyra71409;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 463877 464684 . - . ID=Phyra76336;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000098;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 463877 464684 . - . ID=Phyra76336;Parent=Phyra76336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 463877 463923 . - 0 ID=Phyra76336;Parent=Phyra76336;rank=3 scaffold_17 . exon 463877 463923 . - . ID=Phyra76336.3;Parent=Phyra76336;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 464138 464393 . - 0 ID=Phyra76336;Parent=Phyra76336;rank=2 scaffold_17 . exon 464138 464393 . - . ID=Phyra76336.2;Parent=Phyra76336;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 464607 464684 . - 0 ID=Phyra76336;Parent=Phyra76336;rank=1 scaffold_17 . exon 464607 464684 . - . ID=Phyra76336.1;Parent=Phyra76336;constitutive=1;rank=1 scaffold_17 . repeat_region 475216 475223 . ? . description=dust scaffold_17 . repeat_region 478487 478496 . ? . description=dust scaffold_17 . repeat_region 480189 480221 . ? . description=trf scaffold_17 . repeat_region 480189 480236 . ? . description=trf scaffold_17 . repeat_region 480598 480617 . ? . description=trf scaffold_17 ensembl protein_coding_gene 477978 478349 . - . ID=Phyra76338;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000100;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 477978 478349 . - . ID=Phyra76338;Parent=Phyra76338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 477978 478349 . - 0 ID=Phyra76338;Parent=Phyra76338;rank=1 scaffold_17 . exon 477978 478349 . - . ID=Phyra76338.1;Parent=Phyra76338;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 479976 480416 . - . ID=Phyra76339;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000101;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 479976 480416 . - . ID=Phyra76339;Parent=Phyra76339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 479976 480416 . - 0 ID=Phyra76339;Parent=Phyra76339;rank=1 scaffold_17 . exon 479976 480416 . - . ID=Phyra76339.1;Parent=Phyra76339;constitutive=1;rank=1 scaffold_17 . biological_region 485404 485407 0.999 + . logic_name=eponine scaffold_17 . biological_region 487295 487299 0.999 + . logic_name=eponine scaffold_17 ensembl pseudogenic_tRNA 489303 489372 . - . ID=EPrPRAG00000000120;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_17 ensembl transcript 489303 489372 . - . ID=EPrPRAT00000000120;Parent=EPrPRAG00000000120;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_17 . exon 489303 489372 . - . ID=EPrPRAE00000000120;Parent=EPrPRAT00000000120;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 487214 488605 . + . ID=Phyra76340;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000102;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 487214 488605 . + . ID=Phyra76340;Parent=Phyra76340;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 487214 488605 . + 0 ID=Phyra76340;Parent=Phyra76340;rank=1 scaffold_17 . exon 487214 488605 . + . ID=Phyra76340.1;Parent=Phyra76340;constitutive=1;rank=1 scaffold_17 . repeat_region 493107 493135 . ? . description=dust scaffold_17 . repeat_region 495444 495458 . ? . description=dust scaffold_17 . repeat_region 495892 495929 . ? . description=trf scaffold_17 . repeat_region 500003 500048 . ? . description=trf scaffold_17 ensembl protein_coding_gene 498523 498978 . - . ID=Phyra76341;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000103;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 498523 498978 . - . ID=Phyra76341;Parent=Phyra76341;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 498523 498667 . - 0 ID=Phyra76341;Parent=Phyra76341;rank=3 scaffold_17 . exon 498523 498667 . - . ID=Phyra76341.3;Parent=Phyra76341;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 498744 498832 . - 0 ID=Phyra76341;Parent=Phyra76341;rank=2 scaffold_17 . exon 498744 498832 . - . ID=Phyra76341.2;Parent=Phyra76341;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_17 . CDS 498904 498978 . - 0 ID=Phyra76341;Parent=Phyra76341;rank=1 scaffold_17 . exon 498904 498978 . - . ID=Phyra76341.1;Parent=Phyra76341;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 506600 507106 . - . ID=Phyra76342;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000104;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 506600 507106 . - . ID=Phyra76342;Parent=Phyra76342;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 506600 506695 . - 0 ID=Phyra76342;Parent=Phyra76342;rank=2 scaffold_17 . exon 506600 506695 . - . ID=Phyra76342.2;Parent=Phyra76342;constitutive=1;rank=2 scaffold_17 . CDS 506762 507106 . - 0 ID=Phyra76342;Parent=Phyra76342;rank=1 scaffold_17 . exon 506762 507106 . - . ID=Phyra76342.1;Parent=Phyra76342;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 507293 508087 . + . ID=Phyra76343;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000105;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 507293 508087 . + . ID=Phyra76343;Parent=Phyra76343;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 507293 508087 . + 0 ID=Phyra76343;Parent=Phyra76343;rank=1 scaffold_17 . exon 507293 508087 . + . ID=Phyra76343.1;Parent=Phyra76343;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 508396 509121 . - . ID=Phyra76344;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000106;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 508396 509121 . - . ID=Phyra76344;Parent=Phyra76344;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 508396 509121 . - 0 ID=Phyra76344;Parent=Phyra76344;rank=1 scaffold_17 . exon 508396 509121 . - . ID=Phyra76344.1;Parent=Phyra76344;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 509818 510996 . - . ID=Phyra76345;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000107;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 509818 510996 . - . ID=Phyra76345;Parent=Phyra76345;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 509818 510996 . - 0 ID=Phyra76345;Parent=Phyra76345;rank=1 scaffold_17 . exon 509818 510996 . - . ID=Phyra76345.1;Parent=Phyra76345;constitutive=1;rank=1 scaffold_17 . repeat_region 511759 511816 . ? . description=trf scaffold_17 . repeat_region 512029 512093 . ? . description=trf scaffold_17 . biological_region 512301 512304 0.999 - . logic_name=eponine scaffold_17 . biological_region 512316 512316 0.999 - . logic_name=eponine scaffold_17 . biological_region 512520 512523 0.999 + . logic_name=eponine scaffold_17 . biological_region 512544 512544 0.999 - . logic_name=eponine scaffold_17 . repeat_region 514536 514549 . ? . description=dust scaffold_17 . repeat_region 515652 515670 . ? . description=dust scaffold_17 . repeat_region 515799 515838 . ? . description=trf scaffold_17 . repeat_region 515831 515874 . ? . description=trf scaffold_17 . repeat_region 515837 515897 . ? . description=trf scaffold_17 . repeat_region 515966 515989 . ? . description=trf scaffold_17 . repeat_region 518297 518628 . ? . description=trf scaffold_17 ensembl protein_coding_gene 511680 512831 . - . ID=Phyra76346;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000108;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 511680 512831 . - . ID=Phyra76346;Parent=Phyra76346;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 511680 512831 . - 0 ID=Phyra76346;Parent=Phyra76346;rank=1 scaffold_17 . exon 511680 512831 . - . ID=Phyra76346.1;Parent=Phyra76346;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 513776 514447 . - . ID=Phyra76347;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000109;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 513776 514447 . - . ID=Phyra76347;Parent=Phyra76347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 513776 514447 . - 0 ID=Phyra76347;Parent=Phyra76347;rank=1 scaffold_17 . exon 513776 514447 . - . ID=Phyra76347.1;Parent=Phyra76347;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 515278 517173 . - . ID=Phyra76348;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000110;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 515278 517173 . - . ID=Phyra76348;Parent=Phyra76348;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 515278 516856 . - 0 ID=Phyra76348;Parent=Phyra76348;rank=2 scaffold_17 . exon 515278 516856 . - . ID=Phyra76348.2;Parent=Phyra76348;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 517097 517173 . - 0 ID=Phyra76348;Parent=Phyra76348;rank=1 scaffold_17 . exon 517097 517173 . - . ID=Phyra76348.1;Parent=Phyra76348;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 517835 519868 . - . ID=Phyra76349;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000111;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 517835 519868 . - . ID=Phyra76349;Parent=Phyra76349;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 517835 519868 . - 0 ID=Phyra76349;Parent=Phyra76349;rank=1 scaffold_17 . exon 517835 519868 . - . ID=Phyra76349.1;Parent=Phyra76349;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 521624 523203 . + . ID=Phyra76350;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000112;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 521624 523203 . + . ID=Phyra76350;Parent=Phyra76350;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 521624 521791 . + 0 ID=Phyra76350;Parent=Phyra76350;rank=1 scaffold_17 . exon 521624 521791 . + . ID=Phyra76350.1;Parent=Phyra76350;constitutive=1;rank=1 scaffold_17 . CDS 521854 522796 . + 0 ID=Phyra76350;Parent=Phyra76350;rank=2 scaffold_17 . exon 521854 522796 . + . ID=Phyra76350.2;Parent=Phyra76350;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 522881 523203 . + 0 ID=Phyra76350;Parent=Phyra76350;rank=3 scaffold_17 . exon 522881 523203 . + . ID=Phyra76350.3;Parent=Phyra76350;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 ensembl protein_coding_gene 524440 525489 . + . ID=Phyra76351;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000113;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 524440 525489 . + . ID=Phyra76351;Parent=Phyra76351;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 524440 525489 . + 0 ID=Phyra76351;Parent=Phyra76351;rank=1 scaffold_17 . exon 524440 525489 . + . ID=Phyra76351.1;Parent=Phyra76351;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 526008 527256 . + . ID=Phyra76352;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000114;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 526008 527256 . + . ID=Phyra76352;Parent=Phyra76352;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 526008 526151 . + 0 ID=Phyra76352;Parent=Phyra76352;rank=1 scaffold_17 . exon 526008 526151 . + . ID=Phyra76352.1;Parent=Phyra76352;constitutive=1;rank=1 scaffold_17 . CDS 526222 527256 . + 0 ID=Phyra76352;Parent=Phyra76352;rank=2 scaffold_17 . exon 526222 527256 . + . ID=Phyra76352.2;Parent=Phyra76352;constitutive=1;rank=2 scaffold_17 ensembl protein_coding_gene 527948 529705 . + . ID=Phyra76353;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000115;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 527948 529705 . + . ID=Phyra76353;Parent=Phyra76353;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 527948 528075 . + 0 ID=Phyra76353;Parent=Phyra76353;rank=1 scaffold_17 . exon 527948 528075 . + . ID=Phyra76353.1;Parent=Phyra76353;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 528251 528340 . + 0 ID=Phyra76353;Parent=Phyra76353;rank=2 scaffold_17 . exon 528251 528340 . + . ID=Phyra76353.2;Parent=Phyra76353;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_17 . CDS 528425 528452 . + 0 ID=Phyra76353;Parent=Phyra76353;rank=3 scaffold_17 . exon 528425 528452 . + . ID=Phyra76353.3;Parent=Phyra76353;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 528603 528685 . + 0 ID=Phyra76353;Parent=Phyra76353;rank=4 scaffold_17 . exon 528603 528685 . + . ID=Phyra76353.4;Parent=Phyra76353;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_17 . CDS 528743 529386 . + 0 ID=Phyra76353;Parent=Phyra76353;rank=5 scaffold_17 . exon 528743 529386 . + . ID=Phyra76353.5;Parent=Phyra76353;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_17 . CDS 529500 529705 . + 0 ID=Phyra76353;Parent=Phyra76353;rank=6 scaffold_17 . exon 529500 529705 . + . ID=Phyra76353.6;Parent=Phyra76353;constitutive=1;ensembl_phase=1;rank=6 scaffold_17 ensembl protein_coding_gene 530145 532196 . + . ID=Phyra76354;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000116;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 530145 532196 . + . ID=Phyra76354;Parent=Phyra76354;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 530145 530673 . + 0 ID=Phyra76354;Parent=Phyra76354;rank=1 scaffold_17 . exon 530145 530673 . + . ID=Phyra76354.1;Parent=Phyra76354;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 530710 530914 . + 0 ID=Phyra76354;Parent=Phyra76354;rank=2 scaffold_17 . exon 530710 530914 . + . ID=Phyra76354.2;Parent=Phyra76354;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_17 . CDS 530989 530999 . + 0 ID=Phyra76354;Parent=Phyra76354;rank=3 scaffold_17 . exon 530989 530999 . + . ID=Phyra76354.3;Parent=Phyra76354;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 531230 531835 . + 0 ID=Phyra76354;Parent=Phyra76354;rank=4 scaffold_17 . exon 531230 531835 . + . ID=Phyra76354.4;Parent=Phyra76354;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_17 . CDS 531907 532196 . + 0 ID=Phyra76354;Parent=Phyra76354;rank=5 scaffold_17 . repeat_region 539133 539173 . ? . description=trf scaffold_17 . biological_region 539530 539533 0.999 + . logic_name=eponine scaffold_17 . biological_region 539561 539565 0.999 + . logic_name=eponine scaffold_17 . biological_region 539584 539589 0.999 - . logic_name=eponine scaffold_17 . biological_region 539588 539590 0.999 + . logic_name=eponine scaffold_17 . biological_region 539653 539659 0.999 - . logic_name=eponine scaffold_17 . biological_region 540268 540273 0.999 - . logic_name=eponine scaffold_17 . exon 531907 532196 . + . ID=Phyra76354.5;Parent=Phyra76354;constitutive=1;ensembl_phase=1;rank=5 scaffold_17 ensembl protein_coding_gene 539531 540481 . + . ID=Phyra76355;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000117;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 539531 540481 . + . ID=Phyra76355;Parent=Phyra76355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 539531 539740 . + 0 ID=Phyra76355;Parent=Phyra76355;rank=1 scaffold_17 . exon 539531 539740 . + . ID=Phyra76355.1;Parent=Phyra76355;constitutive=1;rank=1 scaffold_17 . CDS 539831 540481 . + 0 ID=Phyra76355;Parent=Phyra76355;rank=2 scaffold_17 . exon 539831 540481 . + . ID=Phyra76355.2;Parent=Phyra76355;constitutive=1;rank=2 scaffold_17 . repeat_region 542220 542227 . ? . description=dust scaffold_17 ensembl protein_coding_gene 542424 543689 . + . ID=Phyra76356;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000118;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 542424 543689 . + . ID=Phyra76356;Parent=Phyra76356;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 542424 543689 . + 0 ID=Phyra76356;Parent=Phyra76356;rank=1 scaffold_17 . exon 542424 543689 . + . ID=Phyra76356.1;Parent=Phyra76356;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 543853 545848 . - . ID=Phyra76357;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000119;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 543853 545848 . - . ID=Phyra76357;Parent=Phyra76357;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 543853 545192 . - 0 ID=Phyra76357;Parent=Phyra76357;rank=2 scaffold_17 . exon 543853 545192 . - . ID=Phyra76357.2;Parent=Phyra76357;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 545260 545848 . - 0 ID=Phyra76357;Parent=Phyra76357;rank=1 scaffold_17 . exon 545260 545848 . - . ID=Phyra76357.1;Parent=Phyra76357;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 547084 548448 . + . ID=Phyra76358;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000120;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 547084 548448 . + . ID=Phyra76358;Parent=Phyra76358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 547084 548448 . + 0 ID=Phyra76358;Parent=Phyra76358;rank=1 scaffold_17 . exon 547084 548448 . + . ID=Phyra76358.1;Parent=Phyra76358;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 548869 550827 . + . ID=Phyra76359;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000121;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 548869 550827 . + . ID=Phyra76359;Parent=Phyra76359;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 548869 550827 . + 0 ID=Phyra76359;Parent=Phyra76359;rank=1 scaffold_17 . exon 548869 550827 . + . ID=Phyra76359.1;Parent=Phyra76359;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 550915 552927 . - . ID=Phyra76360;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000122;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 550915 552927 . - . ID=Phyra76360;Parent=Phyra76360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 550915 552927 . - 0 ID=Phyra76360;Parent=Phyra76360;rank=1 scaffold_17 . exon 550915 552927 . - . ID=Phyra76360.1;Parent=Phyra76360;constitutive=1;rank=1 scaffold_17 . biological_region 551804 551810 0.999 + . logic_name=eponine scaffold_17 . biological_region 553953 553956 0.999 + . logic_name=eponine scaffold_17 . biological_region 557392 557393 0.999 + . logic_name=eponine scaffold_17 . repeat_region 560293 560312 . ? . description=trf scaffold_17 ensembl protein_coding_gene 553899 555392 . - . ID=Phyra76361;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000123;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 553899 555392 . - . ID=Phyra76361;Parent=Phyra76361;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 553899 555392 . - 0 ID=Phyra76361;Parent=Phyra76361;rank=1 scaffold_17 . exon 553899 555392 . - . ID=Phyra76361.1;Parent=Phyra76361;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 557343 559304 . + . ID=Phyra76362;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000124;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 557343 559304 . + . ID=Phyra76362;Parent=Phyra76362;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 557343 557907 . + 0 ID=Phyra76362;Parent=Phyra76362;rank=1 scaffold_17 . exon 557343 557907 . + . ID=Phyra76362.1;Parent=Phyra76362;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 557968 559304 . + 0 ID=Phyra76362;Parent=Phyra76362;rank=2 scaffold_17 . exon 557968 559304 . + . ID=Phyra76362.2;Parent=Phyra76362;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 ensembl protein_coding_gene 560238 560678 . - . ID=Phyra76363;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000125;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 560238 560678 . - . ID=Phyra76363;Parent=Phyra76363;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 560238 560678 . - 0 ID=Phyra76363;Parent=Phyra76363;rank=1 scaffold_17 . exon 560238 560678 . - . ID=Phyra76363.1;Parent=Phyra76363;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 561113 561715 . - . ID=Phyra76364;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000126;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 561113 561715 . - . ID=Phyra76364;Parent=Phyra76364;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 561113 561715 . - 0 ID=Phyra76364;Parent=Phyra76364;rank=1 scaffold_17 . exon 561113 561715 . - . ID=Phyra76364.1;Parent=Phyra76364;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 567021 568307 . + . ID=Phyra76365;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000127;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 567021 568307 . + . ID=Phyra76365;Parent=Phyra76365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 567021 568307 . + 0 ID=Phyra76365;Parent=Phyra76365;rank=1 scaffold_17 . exon 567021 568307 . + . ID=Phyra76365.1;Parent=Phyra76365;constitutive=1;rank=1 scaffold_17 . repeat_region 570891 570904 . ? . description=dust scaffold_17 . repeat_region 573483 573503 . ? . description=trf scaffold_17 . repeat_region 574742 574749 . ? . description=dust scaffold_17 . biological_region 576699 576699 0.999 + . logic_name=eponine scaffold_17 . repeat_region 577358 577375 . ? . description=dust scaffold_17 ensembl protein_coding_gene 573355 573996 . - . ID=Phyra76366;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000128;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 573355 573996 . - . ID=Phyra76366;Parent=Phyra76366;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 573355 573996 . - 0 ID=Phyra76366;Parent=Phyra76366;rank=1 scaffold_17 . exon 573355 573996 . - . ID=Phyra76366.1;Parent=Phyra76366;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 574888 576043 . - . ID=Phyra76367;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000129;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 574888 576043 . - . ID=Phyra76367;Parent=Phyra76367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 574888 575813 . - 0 ID=Phyra76367;Parent=Phyra76367;rank=2 scaffold_17 . exon 574888 575813 . - . ID=Phyra76367.2;Parent=Phyra76367;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 575884 576043 . - 0 ID=Phyra76367;Parent=Phyra76367;rank=1 scaffold_17 . exon 575884 576043 . - . ID=Phyra76367.1;Parent=Phyra76367;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl pseudogene 581572 581828 . - . ID=Phyra42863;biotype=pseudogene;external_name=gwEuk.17.39.1;logic_name=jgi_phyra1 scaffold_17 ensembl pseudogene 581572 581828 . - . ID=Phyra42863;Parent=Phyra42863;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_17 . exon 581572 581828 . - . ID=Phyra42863.1;Parent=Phyra42863;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 585184 586007 . - . ID=Phyra76368;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000130;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 585184 586007 . - . ID=Phyra76368;Parent=Phyra76368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 585184 585780 . - 0 ID=Phyra76368;Parent=Phyra76368;rank=2 scaffold_17 . exon 585184 585780 . - . ID=Phyra76368.2;Parent=Phyra76368;constitutive=1;rank=2 scaffold_17 . CDS 585909 586007 . - 0 ID=Phyra76368;Parent=Phyra76368;rank=1 scaffold_17 . exon 585909 586007 . - . ID=Phyra76368.1;Parent=Phyra76368;constitutive=1;rank=1 scaffold_17 . repeat_region 590960 590969 . ? . description=dust scaffold_17 . repeat_region 592138 592145 . ? . description=dust scaffold_17 . repeat_region 592678 592687 . ? . description=dust scaffold_17 . repeat_region 594432 594457 . ? . description=trf scaffold_17 . repeat_region 594694 594721 . ? . description=trf scaffold_17 . repeat_region 595601 598245 . ? . description=dust scaffold_17 ensembl protein_coding_gene 594170 595066 . + . ID=Phyra76369;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_17000131;logic_name=jgi_phyra1 scaffold_17 ensembl transcript 594170 595066 . + . ID=Phyra76369;Parent=Phyra76369;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_17 . CDS 594170 594198 . + 0 ID=Phyra76369;Parent=Phyra76369;rank=1 scaffold_17 . exon 594170 594198 . + . ID=Phyra76369.1;Parent=Phyra76369;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 594279 594311 . + 0 ID=Phyra76369;Parent=Phyra76369;rank=2 scaffold_17 . exon 594279 594311 . + . ID=Phyra76369.2;Parent=Phyra76369;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_17 . CDS 594393 594540 . + 0 ID=Phyra76369;Parent=Phyra76369;rank=3 scaffold_17 . exon 594393 594540 . + . ID=Phyra76369.3;Parent=Phyra76369;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 594615 594819 . + 0 ID=Phyra76369;Parent=Phyra76369;rank=4 scaffold_17 . exon 594615 594819 . + . ID=Phyra76369.4;Parent=Phyra76369;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_17 . CDS 594865 594881 . + 0 ID=Phyra76369;Parent=Phyra76369;rank=5 scaffold_17 . exon 594865 594881 . + . ID=Phyra76369.5;Parent=Phyra76369;constitutive=1;ensembl_phase=1;rank=5 scaffold_17 . CDS 594921 595008 . + 0 ID=Phyra76369;Parent=Phyra76369;rank=6 scaffold_17 . exon 594921 595008 . + . ID=Phyra76369.6;Parent=Phyra76369;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_17 . CDS 595044 595066 . + 0 ID=Phyra76369;Parent=Phyra76369;rank=7 scaffold_17 . exon 595044 595066 . + . ID=Phyra76369.7;Parent=Phyra76369;constitutive=1;ensembl_phase=1;rank=7 ##gff-version 3 ##sequence-region scaffold_16 1 604796 scaffold_16 . repeat_region 1166 2175 . ? . description=dust scaffold_16 . repeat_region 3031 4027 . ? . description=trf scaffold_16 . repeat_region 3052 4064 . ? . description=trf scaffold_16 . biological_region 3055 3055 0.999 + . logic_name=eponine scaffold_16 . repeat_region 3155 3213 . ? . description=trf scaffold_16 . repeat_region 3212 3232 . ? . description=trf scaffold_16 . biological_region 3229 3232 0.999 - . logic_name=eponine scaffold_16 . biological_region 3286 3288 0.999 + . logic_name=eponine scaffold_16 . repeat_region 3384 3442 . ? . description=trf scaffold_16 . repeat_region 3399 5228 . ? . description=trf scaffold_16 . repeat_region 3441 3461 . ? . description=trf scaffold_16 . repeat_region 3447 5228 . ? . description=trf scaffold_16 . biological_region 3458 3461 0.999 - . logic_name=eponine scaffold_16 . biological_region 3515 3517 0.999 + . logic_name=eponine scaffold_16 . repeat_region 3613 3651 . ? . description=trf scaffold_16 . biological_region 3671 3676 0.999 - . logic_name=eponine scaffold_16 . biological_region 3729 3731 0.999 + . logic_name=eponine scaffold_16 . repeat_region 3822 3865 . ? . description=trf scaffold_16 . repeat_region 3864 3884 . ? . description=trf scaffold_16 . biological_region 4048 4050 0.999 + . logic_name=eponine scaffold_16 . biological_region 4076 4081 0.999 - . logic_name=eponine scaffold_16 . biological_region 4134 4136 0.999 + . logic_name=eponine scaffold_16 . repeat_region 4227 4270 . ? . description=trf scaffold_16 . repeat_region 4269 4289 . ? . description=trf scaffold_16 . biological_region 4285 4290 0.999 - . logic_name=eponine scaffold_16 . biological_region 4343 4345 0.999 + . logic_name=eponine scaffold_16 . repeat_region 4436 4479 . ? . description=trf scaffold_16 . biological_region 4488 4493 0.999 - . logic_name=eponine scaffold_16 . biological_region 4546 4548 0.999 + . logic_name=eponine scaffold_16 . repeat_region 4647 4689 . ? . description=trf scaffold_16 . biological_region 4698 4703 0.999 - . logic_name=eponine scaffold_16 . biological_region 4756 4758 0.999 + . logic_name=eponine scaffold_16 . repeat_region 4849 4882 . ? . description=trf scaffold_16 . repeat_region 4881 4901 . ? . description=trf scaffold_16 . biological_region 4897 4901 0.999 - . logic_name=eponine scaffold_16 . biological_region 4955 4958 0.999 + . logic_name=eponine scaffold_16 . repeat_region 5056 5094 . ? . description=trf scaffold_16 . biological_region 5103 5108 0.999 - . logic_name=eponine scaffold_16 . repeat_region 5591 5624 . ? . description=trf scaffold_16 . repeat_region 5928 5960 . ? . description=trf scaffold_16 . repeat_region 6334 6365 . ? . description=trf scaffold_16 . repeat_region 6335 6401 . + . description=(TTAG)n scaffold_16 . repeat_region 6347 6401 . ? . description=trf scaffold_16 . repeat_region 6355 6401 . ? . description=dust scaffold_16 ensembl protein_coding_gene 3443 5283 . + . ID=Phyra76047;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000001;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 3443 5283 . + . ID=Phyra76047;Parent=Phyra76047;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 3443 4296 . + 0 ID=Phyra76047;Parent=Phyra76047;rank=1 scaffold_16 . exon 3443 4296 . + . ID=Phyra76047.1;Parent=Phyra76047;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 4320 5283 . + 0 ID=Phyra76047;Parent=Phyra76047;rank=2 scaffold_16 . exon 4320 5283 . + . ID=Phyra76047.2;Parent=Phyra76047;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 ensembl protein_coding_gene 12132 14734 . + . ID=Phyra76048;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000002;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 12132 14734 . + . ID=Phyra76048;Parent=Phyra76048;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 12132 14042 . + 0 ID=Phyra76048;Parent=Phyra76048;rank=1 scaffold_16 . exon 12132 14042 . + . ID=Phyra76048.1;Parent=Phyra76048;constitutive=1;rank=1 scaffold_16 . CDS 14111 14284 . + 0 ID=Phyra76048;Parent=Phyra76048;rank=2 scaffold_16 . exon 14111 14284 . + . ID=Phyra76048.2;Parent=Phyra76048;constitutive=1;rank=2 scaffold_16 . CDS 14348 14734 . + 0 ID=Phyra76048;Parent=Phyra76048;rank=3 scaffold_16 . exon 14348 14734 . + . ID=Phyra76048.3;Parent=Phyra76048;constitutive=1;rank=3 scaffold_16 ensembl protein_coding_gene 15094 15528 . - . ID=Phyra76049;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000003;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 15094 15528 . - . ID=Phyra76049;Parent=Phyra76049;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 15094 15230 . - 0 ID=Phyra76049;Parent=Phyra76049;rank=2 scaffold_16 . exon 15094 15230 . - . ID=Phyra76049.2;Parent=Phyra76049;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 15309 15528 . - 0 ID=Phyra76049;Parent=Phyra76049;rank=1 scaffold_16 . exon 15309 15528 . - . ID=Phyra76049.1;Parent=Phyra76049;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 18571 21200 . + . ID=Phyra76050;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000004;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 18571 21200 . + . ID=Phyra76050;Parent=Phyra76050;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 18571 18962 . + 0 ID=Phyra76050;Parent=Phyra76050;rank=1 scaffold_16 . exon 18571 18962 . + . ID=Phyra76050.1;Parent=Phyra76050;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 19045 19045 . + 0 ID=Phyra76050;Parent=Phyra76050;rank=2 scaffold_16 . exon 19045 19045 . + . ID=Phyra76050.2;Parent=Phyra76050;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 19135 19362 . + 0 ID=Phyra76050;Parent=Phyra76050;rank=3 scaffold_16 . exon 19135 19362 . + . ID=Phyra76050.3;Parent=Phyra76050;constitutive=1;rank=3 scaffold_16 . CDS 19435 19869 . + 0 ID=Phyra76050;Parent=Phyra76050;rank=4 scaffold_16 . exon 19435 19869 . + . ID=Phyra76050.4;Parent=Phyra76050;constitutive=1;rank=4 scaffold_16 . CDS 20094 21200 . + 0 ID=Phyra76050;Parent=Phyra76050;rank=5 scaffold_16 . biological_region 20217 20218 0.999 - . logic_name=eponine scaffold_16 . biological_region 24612 24612 0.999 + . logic_name=eponine scaffold_16 . biological_region 24639 24645 0.999 + . logic_name=eponine scaffold_16 . biological_region 24684 24686 0.999 - . logic_name=eponine scaffold_16 . biological_region 24707 24712 0.999 + . logic_name=eponine scaffold_16 . biological_region 24726 24726 0.999 + . logic_name=eponine scaffold_16 . biological_region 24737 24741 0.999 + . logic_name=eponine scaffold_16 . biological_region 24803 24806 0.999 - . logic_name=eponine scaffold_16 . biological_region 24986 24989 0.999 + . logic_name=eponine scaffold_16 . biological_region 25127 25129 0.999 - . logic_name=eponine scaffold_16 . repeat_region 25268 25307 . ? . description=trf scaffold_16 . exon 20094 21200 . + . ID=Phyra76050.5;Parent=Phyra76050;constitutive=1;rank=5 scaffold_16 ensembl protein_coding_gene 25324 26256 . + . ID=Phyra76051;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000005;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 25324 26256 . + . ID=Phyra76051;Parent=Phyra76051;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 25324 25455 . + 0 ID=Phyra76051;Parent=Phyra76051;rank=1 scaffold_16 . exon 25324 25455 . + . ID=Phyra76051.1;Parent=Phyra76051;constitutive=1;rank=1 scaffold_16 . CDS 25542 25617 . + 0 ID=Phyra76051;Parent=Phyra76051;rank=2 scaffold_16 . exon 25542 25617 . + . ID=Phyra76051.2;Parent=Phyra76051;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 25791 25926 . + 0 ID=Phyra76051;Parent=Phyra76051;rank=3 scaffold_16 . exon 25791 25926 . + . ID=Phyra76051.3;Parent=Phyra76051;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_16 . CDS 26019 26256 . + 0 ID=Phyra76051;Parent=Phyra76051;rank=4 scaffold_16 . exon 26019 26256 . + . ID=Phyra76051.4;Parent=Phyra76051;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . repeat_region 32695 32735 . ? . description=dust scaffold_16 ensembl protein_coding_gene 33555 34598 . - . ID=Phyra42518;biotype=protein_coding;external_name=gwEuk.16.166.1;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 33555 34598 . - . ID=Phyra42518;Parent=Phyra42518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 33555 34169 . - 0 ID=Phyra42518;Parent=Phyra42518;rank=2 scaffold_16 . exon 33555 34169 . - . ID=Phyra42518.2;Parent=Phyra42518;constitutive=1;rank=2 scaffold_16 . CDS 34518 34598 . - 0 ID=Phyra42518;Parent=Phyra42518;rank=1 scaffold_16 . exon 34518 34598 . - . ID=Phyra42518.1;Parent=Phyra42518;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 36259 37497 . - . ID=Phyra76054;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000008;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 36259 37497 . - . ID=Phyra76054;Parent=Phyra76054;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 36259 37497 . - 0 ID=Phyra76054;Parent=Phyra76054;rank=1 scaffold_16 . exon 36259 37497 . - . ID=Phyra76054.1;Parent=Phyra76054;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 29796 33177 . - . ID=Phyra94344;biotype=protein_coding;external_name=C_scaffold_16000001;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 29796 33177 . - . ID=Phyra94344;Parent=Phyra94344;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 29796 29846 . - 0 ID=Phyra94344;Parent=Phyra94344;rank=13 scaffold_16 . exon 29796 29846 . - . ID=Phyra94344.13;Parent=Phyra94344;constitutive=1;rank=13 scaffold_16 . CDS 29920 30004 . - 0 ID=Phyra94344;Parent=Phyra94344;rank=12 scaffold_16 . exon 29920 30004 . - . ID=Phyra94344.12;Parent=Phyra94344;constitutive=1;ensembl_phase=2;rank=12 scaffold_16 . CDS 30068 30080 . - 0 ID=Phyra94344;Parent=Phyra94344;rank=11 scaffold_16 . exon 30068 30080 . - . ID=Phyra94344.11;Parent=Phyra94344;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_16 . CDS 30103 30196 . - 0 ID=Phyra94344;Parent=Phyra94344;rank=10 scaffold_16 . exon 30103 30196 . - . ID=Phyra94344.10;Parent=Phyra94344;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_16 . CDS 30283 30398 . - 0 ID=Phyra94344;Parent=Phyra94344;rank=9 scaffold_16 . exon 30283 30398 . - . ID=Phyra94344.9;Parent=Phyra94344;constitutive=1;ensembl_phase=1;rank=9 scaffold_16 . CDS 30702 30813 . - 0 ID=Phyra94344;Parent=Phyra94344;rank=8 scaffold_16 . exon 30702 30813 . - . ID=Phyra94344.8;Parent=Phyra94344;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_16 . CDS 30934 31344 . - 0 ID=Phyra94344;Parent=Phyra94344;rank=7 scaffold_16 . exon 30934 31344 . - . ID=Phyra94344.7;Parent=Phyra94344;constitutive=1;rank=7 scaffold_16 . CDS 31420 31790 . - 0 ID=Phyra94344;Parent=Phyra94344;rank=6 scaffold_16 . exon 31420 31790 . - . ID=Phyra94344.6;Parent=Phyra94344;constitutive=1;ensembl_phase=1;rank=6 scaffold_16 . CDS 31867 32259 . - 0 ID=Phyra94344;Parent=Phyra94344;rank=5 scaffold_16 . exon 31867 32259 . - . ID=Phyra94344.5;Parent=Phyra94344;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_16 . CDS 32293 32409 . - 0 ID=Phyra94344;Parent=Phyra94344;rank=4 scaffold_16 . exon 32293 32409 . - . ID=Phyra94344.4;Parent=Phyra94344;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 32501 32682 . - 0 ID=Phyra94344;Parent=Phyra94344;rank=3 scaffold_16 . exon 32501 32682 . - . ID=Phyra94344.3;Parent=Phyra94344;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 32758 33088 . - 0 ID=Phyra94344;Parent=Phyra94344;rank=2 scaffold_16 . exon 32758 33088 . - . ID=Phyra94344.2;Parent=Phyra94344;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 33174 33177 . - 0 ID=Phyra94344;Parent=Phyra94344;rank=1 scaffold_16 . exon 33174 33177 . - . ID=Phyra94344.1;Parent=Phyra94344;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 38829 40450 . - . ID=Phyra94347;biotype=protein_coding;external_name=C_scaffold_16000004;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 38829 40450 . - . ID=Phyra94347;Parent=Phyra94347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 38829 38918 . - 0 ID=Phyra94347;Parent=Phyra94347;rank=7 scaffold_16 . exon 38829 38918 . - . ID=Phyra94347.7;Parent=Phyra94347;constitutive=1;rank=7 scaffold_16 . CDS 38982 39021 . - 0 ID=Phyra94347;Parent=Phyra94347;rank=6 scaffold_16 . exon 38982 39021 . - . ID=Phyra94347.6;Parent=Phyra94347;constitutive=1;ensembl_phase=2;rank=6 scaffold_16 . CDS 39106 39159 . - 0 ID=Phyra94347;Parent=Phyra94347;rank=5 scaffold_16 . exon 39106 39159 . - . ID=Phyra94347.5;Parent=Phyra94347;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_16 . CDS 39291 39475 . - 0 ID=Phyra94347;Parent=Phyra94347;rank=4 scaffold_16 . exon 39291 39475 . - . ID=Phyra94347.4;Parent=Phyra94347;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_16 . CDS 39539 39673 . - 0 ID=Phyra94347;Parent=Phyra94347;rank=3 scaffold_16 . exon 39539 39673 . - . ID=Phyra94347.3;Parent=Phyra94347;constitutive=1;rank=3 scaffold_16 . CDS 39752 40166 . - 0 ID=Phyra94347;Parent=Phyra94347;rank=2 scaffold_16 . CDS 40233 40450 . - 0 ID=Phyra94347;Parent=Phyra94347;rank=1 scaffold_16 . biological_region 40357 40359 0.999 + . logic_name=eponine scaffold_16 . biological_region 41441 41444 0.999 - . logic_name=eponine scaffold_16 . repeat_region 43640 43665 . ? . description=trf scaffold_16 ensembl protein_coding_gene 40958 47428 . + . ID=Phyra76056;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000010;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 40958 47428 . + . ID=Phyra76056;Parent=Phyra76056;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 40958 41046 . + 0 ID=Phyra76056;Parent=Phyra76056;rank=1 scaffold_16 . exon 40958 41046 . + . ID=Phyra76056.1;Parent=Phyra76056;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 41257 41670 . + 0 ID=Phyra76056;Parent=Phyra76056;rank=2 scaffold_16 . exon 41257 41670 . + . ID=Phyra76056.2;Parent=Phyra76056;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . CDS 41752 47428 . + 0 ID=Phyra76056;Parent=Phyra76056;rank=3 scaffold_16 . exon 41752 47428 . + . ID=Phyra76056.3;Parent=Phyra76056;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 ensembl protein_coding_gene 48699 54824 . + . ID=Phyra76057;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000011;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 48699 54824 . + . ID=Phyra76057;Parent=Phyra76057;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 48699 54824 . + 0 ID=Phyra76057;Parent=Phyra76057;rank=1 scaffold_16 . exon 48699 54824 . + . ID=Phyra76057.1;Parent=Phyra76057;constitutive=1;rank=1 scaffold_16 . exon 39752 40166 . - . ID=Phyra94347.2;Parent=Phyra94347;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . exon 40233 40450 . - . ID=Phyra94347.1;Parent=Phyra94347;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . repeat_region 51027 51055 . ? . description=dust scaffold_16 ensembl protein_coding_gene 54994 59831 . - . ID=Phyra94350;biotype=protein_coding;external_name=C_scaffold_16000007;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 54994 59831 . - . ID=Phyra94350;Parent=Phyra94350;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 54994 55218 . - 0 ID=Phyra94350;Parent=Phyra94350;rank=17 scaffold_16 . exon 54994 55218 . - . ID=Phyra94350.17;Parent=Phyra94350;constitutive=1;rank=17 scaffold_16 . CDS 55537 56359 . - 0 ID=Phyra94350;Parent=Phyra94350;rank=16 scaffold_16 . exon 55537 56359 . - . ID=Phyra94350.16;Parent=Phyra94350;constitutive=1;ensembl_phase=2;rank=16 scaffold_16 . CDS 56432 56545 . - 0 ID=Phyra94350;Parent=Phyra94350;rank=15 scaffold_16 . exon 56432 56545 . - . ID=Phyra94350.15;Parent=Phyra94350;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=15 scaffold_16 . CDS 56603 56716 . - 0 ID=Phyra94350;Parent=Phyra94350;rank=14 scaffold_16 . exon 56603 56716 . - . ID=Phyra94350.14;Parent=Phyra94350;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=14 scaffold_16 . CDS 56819 57014 . - 0 ID=Phyra94350;Parent=Phyra94350;rank=13 scaffold_16 . exon 56819 57014 . - . ID=Phyra94350.13;Parent=Phyra94350;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=13 scaffold_16 . CDS 57039 57197 . - 0 ID=Phyra94350;Parent=Phyra94350;rank=12 scaffold_16 . exon 57039 57197 . - . ID=Phyra94350.12;Parent=Phyra94350;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_16 . CDS 57363 57402 . - 0 ID=Phyra94350;Parent=Phyra94350;rank=11 scaffold_16 . exon 57363 57402 . - . ID=Phyra94350.11;Parent=Phyra94350;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_16 . CDS 57484 57561 . - 0 ID=Phyra94350;Parent=Phyra94350;rank=10 scaffold_16 . exon 57484 57561 . - . ID=Phyra94350.10;Parent=Phyra94350;constitutive=1;rank=10 scaffold_16 . CDS 57628 57748 . - 0 ID=Phyra94350;Parent=Phyra94350;rank=9 scaffold_16 . exon 57628 57748 . - . ID=Phyra94350.9;Parent=Phyra94350;constitutive=1;ensembl_phase=2;rank=9 scaffold_16 . CDS 57926 58023 . - 0 ID=Phyra94350;Parent=Phyra94350;rank=8 scaffold_16 . exon 57926 58023 . - . ID=Phyra94350.8;Parent=Phyra94350;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_16 . CDS 58122 58205 . - 0 ID=Phyra94350;Parent=Phyra94350;rank=7 scaffold_16 . exon 58122 58205 . - . ID=Phyra94350.7;Parent=Phyra94350;constitutive=1;rank=7 scaffold_16 . CDS 58280 58378 . - 0 ID=Phyra94350;Parent=Phyra94350;rank=6 scaffold_16 . exon 58280 58378 . - . ID=Phyra94350.6;Parent=Phyra94350;constitutive=1;rank=6 scaffold_16 . CDS 58465 58563 . - 0 ID=Phyra94350;Parent=Phyra94350;rank=5 scaffold_16 . exon 58465 58563 . - . ID=Phyra94350.5;Parent=Phyra94350;constitutive=1;rank=5 scaffold_16 . CDS 58652 58756 . - 0 ID=Phyra94350;Parent=Phyra94350;rank=4 scaffold_16 . exon 58652 58756 . - . ID=Phyra94350.4;Parent=Phyra94350;constitutive=1;rank=4 scaffold_16 . CDS 58826 58924 . - 0 ID=Phyra94350;Parent=Phyra94350;rank=3 scaffold_16 . exon 58826 58924 . - . ID=Phyra94350.3;Parent=Phyra94350;constitutive=1;rank=3 scaffold_16 . CDS 58986 59087 . - 0 ID=Phyra94350;Parent=Phyra94350;rank=2 scaffold_16 . exon 58986 59087 . - . ID=Phyra94350.2;Parent=Phyra94350;constitutive=1;rank=2 scaffold_16 . CDS 59169 59831 . - 0 ID=Phyra94350;Parent=Phyra94350;rank=1 scaffold_16 . exon 59169 59831 . - . ID=Phyra94350.1;Parent=Phyra94350;constitutive=1;rank=1 scaffold_16 . biological_region 61546 61546 0.999 + . logic_name=eponine scaffold_16 . biological_region 65921 65921 0.999 + . logic_name=eponine scaffold_16 . biological_region 68306 68311 0.999 - . logic_name=eponine scaffold_16 . biological_region 68647 68648 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 67941 68789 . - . ID=Phyra71382;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000002;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 67941 68789 . - . ID=Phyra71382;Parent=Phyra71382;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 67941 68789 . - 0 ID=Phyra71382;Parent=Phyra71382;rank=1 scaffold_16 . exon 67941 68789 . - . ID=Phyra71382.1;Parent=Phyra71382;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 60594 61841 . + . ID=Phyra76060;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000014;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 60594 61841 . + . ID=Phyra76060;Parent=Phyra76060;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 60594 61841 . + 0 ID=Phyra76060;Parent=Phyra76060;rank=1 scaffold_16 . exon 60594 61841 . + . ID=Phyra76060.1;Parent=Phyra76060;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 61991 63553 . + . ID=Phyra76061;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000015;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 61991 63553 . + . ID=Phyra76061;Parent=Phyra76061;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 61991 63553 . + 0 ID=Phyra76061;Parent=Phyra76061;rank=1 scaffold_16 . exon 61991 63553 . + . ID=Phyra76061.1;Parent=Phyra76061;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 64458 65189 . - . ID=Phyra76062;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000016;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 64458 65189 . - . ID=Phyra76062;Parent=Phyra76062;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 64458 65189 . - 0 ID=Phyra76062;Parent=Phyra76062;rank=1 scaffold_16 . exon 64458 65189 . - . ID=Phyra76062.1;Parent=Phyra76062;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 65556 67542 . + . ID=Phyra76063;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000017;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 65556 67542 . + . ID=Phyra76063;Parent=Phyra76063;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 65556 65579 . + 0 ID=Phyra76063;Parent=Phyra76063;rank=1 scaffold_16 . exon 65556 65579 . + . ID=Phyra76063.1;Parent=Phyra76063;constitutive=1;rank=1 scaffold_16 . CDS 65648 65709 . + 0 ID=Phyra76063;Parent=Phyra76063;rank=2 scaffold_16 . exon 65648 65709 . + . ID=Phyra76063.2;Parent=Phyra76063;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_16 . CDS 65781 66050 . + 0 ID=Phyra76063;Parent=Phyra76063;rank=3 scaffold_16 . exon 65781 66050 . + . ID=Phyra76063.3;Parent=Phyra76063;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_16 . CDS 66139 66247 . + 0 ID=Phyra76063;Parent=Phyra76063;rank=4 scaffold_16 . exon 66139 66247 . + . ID=Phyra76063.4;Parent=Phyra76063;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . CDS 66324 66571 . + 0 ID=Phyra76063;Parent=Phyra76063;rank=5 scaffold_16 . exon 66324 66571 . + . ID=Phyra76063.5;Parent=Phyra76063;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_16 . CDS 66651 66717 . + 0 ID=Phyra76063;Parent=Phyra76063;rank=6 scaffold_16 . exon 66651 66717 . + . ID=Phyra76063.6;Parent=Phyra76063;constitutive=1;ensembl_phase=2;rank=6 scaffold_16 . CDS 66783 67445 . + 0 ID=Phyra76063;Parent=Phyra76063;rank=7 scaffold_16 . exon 66783 67445 . + . ID=Phyra76063.7;Parent=Phyra76063;constitutive=1;rank=7 scaffold_16 . CDS 67525 67542 . + 0 ID=Phyra76063;Parent=Phyra76063;rank=8 scaffold_16 . exon 67525 67542 . + . ID=Phyra76063.8;Parent=Phyra76063;constitutive=1;rank=8 scaffold_16 ensembl protein_coding_gene 72139 73503 . - . ID=Phyra71383;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000003;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 72139 73503 . - . ID=Phyra71383;Parent=Phyra71383;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 72139 73503 . - 0 ID=Phyra71383;Parent=Phyra71383;rank=1 scaffold_16 . exon 72139 73503 . - . ID=Phyra71383.1;Parent=Phyra71383;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 70165 71325 . + . ID=Phyra76065;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000019;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 70165 71325 . + . ID=Phyra76065;Parent=Phyra76065;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 70165 70443 . + 0 ID=Phyra76065;Parent=Phyra76065;rank=1 scaffold_16 . exon 70165 70443 . + . ID=Phyra76065.1;Parent=Phyra76065;constitutive=1;rank=1 scaffold_16 . CDS 70569 70671 . + 0 ID=Phyra76065;Parent=Phyra76065;rank=2 scaffold_16 . exon 70569 70671 . + . ID=Phyra76065.2;Parent=Phyra76065;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 70754 71325 . + 0 ID=Phyra76065;Parent=Phyra76065;rank=3 scaffold_16 . exon 70754 71325 . + . ID=Phyra76065.3;Parent=Phyra76065;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 ensembl protein_coding_gene 74029 75216 . - . ID=Phyra76067;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000021;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 74029 75216 . - . ID=Phyra76067;Parent=Phyra76067;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 74029 74351 . - 0 ID=Phyra76067;Parent=Phyra76067;rank=4 scaffold_16 . exon 74029 74351 . - . ID=Phyra76067.4;Parent=Phyra76067;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 74428 74665 . - 0 ID=Phyra76067;Parent=Phyra76067;rank=3 scaffold_16 . exon 74428 74665 . - . ID=Phyra76067.3;Parent=Phyra76067;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_16 . CDS 74734 74822 . - 0 ID=Phyra76067;Parent=Phyra76067;rank=2 scaffold_16 . exon 74734 74822 . - . ID=Phyra76067.2;Parent=Phyra76067;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 74889 75216 . - 0 ID=Phyra76067;Parent=Phyra76067;rank=1 scaffold_16 . exon 74889 75216 . - . ID=Phyra76067.1;Parent=Phyra76067;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 75534 78339 . + . ID=Phyra94355;biotype=protein_coding;external_name=C_scaffold_16000012;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 75534 78339 . + . ID=Phyra94355;Parent=Phyra94355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 75534 75575 . + 0 ID=Phyra94355;Parent=Phyra94355;rank=1 scaffold_16 . exon 75534 75575 . + . ID=Phyra94355.1;Parent=Phyra94355;constitutive=1;rank=1 scaffold_16 . CDS 75648 77711 . + 0 ID=Phyra94355;Parent=Phyra94355;rank=2 scaffold_16 . exon 75648 77711 . + . ID=Phyra94355.2;Parent=Phyra94355;constitutive=1;rank=2 scaffold_16 . CDS 77868 78041 . + 0 ID=Phyra94355;Parent=Phyra94355;rank=3 scaffold_16 . exon 77868 78041 . + . ID=Phyra94355.3;Parent=Phyra94355;constitutive=1;rank=3 scaffold_16 . CDS 78107 78254 . + 0 ID=Phyra94355;Parent=Phyra94355;rank=4 scaffold_16 . exon 78107 78254 . + . ID=Phyra94355.4;Parent=Phyra94355;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_16 . CDS 78335 78339 . + 0 ID=Phyra94355;Parent=Phyra94355;rank=5 scaffold_16 . exon 78335 78339 . + . ID=Phyra94355.5;Parent=Phyra94355;constitutive=1;ensembl_phase=1;rank=5 scaffold_16 ensembl protein_coding_gene 83292 84293 . - . ID=Phyra76069;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000023;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 83292 84293 . - . ID=Phyra76069;Parent=Phyra76069;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 83292 84293 . - 0 ID=Phyra76069;Parent=Phyra76069;rank=1 scaffold_16 . exon 83292 84293 . - . ID=Phyra76069.1;Parent=Phyra76069;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 84728 87438 . + . ID=Phyra94359;biotype=protein_coding;external_name=C_scaffold_16000016;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 84728 87438 . + . ID=Phyra94359;Parent=Phyra94359;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 84728 84772 . + 0 ID=Phyra94359;Parent=Phyra94359;rank=1 scaffold_16 . exon 84728 84772 . + . ID=Phyra94359.1;Parent=Phyra94359;constitutive=1;rank=1 scaffold_16 . CDS 84845 85286 . + 0 ID=Phyra94359;Parent=Phyra94359;rank=2 scaffold_16 . exon 84845 85286 . + . ID=Phyra94359.2;Parent=Phyra94359;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 85358 85483 . + 0 ID=Phyra94359;Parent=Phyra94359;rank=3 scaffold_16 . exon 85358 85483 . + . ID=Phyra94359.3;Parent=Phyra94359;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 85574 85602 . + 0 ID=Phyra94359;Parent=Phyra94359;rank=4 scaffold_16 . exon 85574 85602 . + . ID=Phyra94359.4;Parent=Phyra94359;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 85793 85991 . + 0 ID=Phyra94359;Parent=Phyra94359;rank=5 scaffold_16 . exon 85793 85991 . + . ID=Phyra94359.5;Parent=Phyra94359;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_16 . CDS 86028 86957 . + 0 ID=Phyra94359;Parent=Phyra94359;rank=6 scaffold_16 . exon 86028 86957 . + . ID=Phyra94359.6;Parent=Phyra94359;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_16 . CDS 86997 87212 . + 0 ID=Phyra94359;Parent=Phyra94359;rank=7 scaffold_16 . exon 86997 87212 . + . ID=Phyra94359.7;Parent=Phyra94359;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_16 . CDS 87395 87438 . + 0 ID=Phyra94359;Parent=Phyra94359;rank=8 scaffold_16 . exon 87395 87438 . + . ID=Phyra94359.8;Parent=Phyra94359;constitutive=1;ensembl_phase=1;rank=8 scaffold_16 . biological_region 97073 97074 0.999 + . logic_name=eponine scaffold_16 . biological_region 97116 97118 0.999 - . logic_name=eponine scaffold_16 . biological_region 97248 97250 0.999 + . logic_name=eponine scaffold_16 . biological_region 97323 97326 0.999 - . logic_name=eponine scaffold_16 . repeat_region 98434 98468 . ? . description=trf scaffold_16 ensembl protein_coding_gene 93556 94431 . - . ID=Phyra42541;biotype=protein_coding;external_name=gwEuk.16.189.1;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 93556 94431 . - . ID=Phyra42541;Parent=Phyra42541;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 93556 94431 . - 0 ID=Phyra42541;Parent=Phyra42541;rank=1 scaffold_16 . exon 93556 94431 . - . ID=Phyra42541.1;Parent=Phyra42541;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 98006 100244 . + . ID=Phyra42543;biotype=protein_coding;external_name=gwEuk.16.191.1;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 98006 100244 . + . ID=Phyra42543;Parent=Phyra42543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 98006 98148 . + 0 ID=Phyra42543;Parent=Phyra42543;rank=1 scaffold_16 . exon 98006 98148 . + . ID=Phyra42543.1;Parent=Phyra42543;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 98221 99268 . + 0 ID=Phyra42543;Parent=Phyra42543;rank=2 scaffold_16 . exon 98221 99268 . + . ID=Phyra42543.2;Parent=Phyra42543;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 99377 99903 . + 0 ID=Phyra42543;Parent=Phyra42543;rank=3 scaffold_16 . CDS 100015 100117 . + 0 ID=Phyra42543;Parent=Phyra42543;rank=4 scaffold_16 . CDS 100200 100244 . + 0 ID=Phyra42543;Parent=Phyra42543;rank=5 scaffold_16 ensembl protein_coding_gene 94524 97017 . - . ID=Phyra76075;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000029;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 94524 97017 . - . ID=Phyra76075;Parent=Phyra76075;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 94524 96823 . - 0 ID=Phyra76075;Parent=Phyra76075;rank=2 scaffold_16 . exon 94524 96823 . - . ID=Phyra76075.2;Parent=Phyra76075;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 96899 97017 . - 0 ID=Phyra76075;Parent=Phyra76075;rank=1 scaffold_16 . exon 96899 97017 . - . ID=Phyra76075.1;Parent=Phyra76075;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 89352 91521 . - . ID=Phyra94360;biotype=protein_coding;external_name=C_scaffold_16000017;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 89352 91521 . - . ID=Phyra94360;Parent=Phyra94360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 89352 89402 . - 0 ID=Phyra94360;Parent=Phyra94360;rank=3 scaffold_16 . exon 89352 89402 . - . ID=Phyra94360.3;Parent=Phyra94360;constitutive=1;rank=3 scaffold_16 . CDS 89521 89735 . - 0 ID=Phyra94360;Parent=Phyra94360;rank=2 scaffold_16 . exon 89521 89735 . - . ID=Phyra94360.2;Parent=Phyra94360;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 89766 91521 . - 0 ID=Phyra94360;Parent=Phyra94360;rank=1 scaffold_16 . exon 89766 91521 . - . ID=Phyra94360.1;Parent=Phyra94360;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 92139 93262 . + . ID=Phyra94361;biotype=protein_coding;external_name=C_scaffold_16000018;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 92139 93262 . + . ID=Phyra94361;Parent=Phyra94361;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 92139 92230 . + 0 ID=Phyra94361;Parent=Phyra94361;rank=1 scaffold_16 . exon 92139 92230 . + . ID=Phyra94361.1;Parent=Phyra94361;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 92299 92334 . + 0 ID=Phyra94361;Parent=Phyra94361;rank=2 scaffold_16 . exon 92299 92334 . + . ID=Phyra94361.2;Parent=Phyra94361;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . CDS 92402 92459 . + 0 ID=Phyra94361;Parent=Phyra94361;rank=3 scaffold_16 . exon 92402 92459 . + . ID=Phyra94361.3;Parent=Phyra94361;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 92530 92610 . + 0 ID=Phyra94361;Parent=Phyra94361;rank=4 scaffold_16 . exon 92530 92610 . + . ID=Phyra94361.4;Parent=Phyra94361;constitutive=1;rank=4 scaffold_16 . CDS 92672 93262 . + 0 ID=Phyra94361;Parent=Phyra94361;rank=5 scaffold_16 . exon 92672 93262 . + . ID=Phyra94361.5;Parent=Phyra94361;constitutive=1;rank=5 scaffold_16 . repeat_region 100993 101201 . + . description=(CTG)n scaffold_16 . repeat_region 101035 101154 . ? . description=dust scaffold_16 . exon 99377 99903 . + . ID=Phyra42543.3;Parent=Phyra42543;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_16 . exon 100015 100117 . + . ID=Phyra42543.4;Parent=Phyra42543;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . exon 100200 100244 . + . ID=Phyra42543.5;Parent=Phyra42543;constitutive=1;rank=5 scaffold_16 ensembl protein_coding_gene 100863 101477 . - . ID=Phyra76077;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000031;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 100863 101477 . - . ID=Phyra76077;Parent=Phyra76077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 100863 101477 . - 0 ID=Phyra76077;Parent=Phyra76077;rank=1 scaffold_16 . exon 100863 101477 . - . ID=Phyra76077.1;Parent=Phyra76077;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 103154 103699 . - . ID=Phyra76078;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000032;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 103154 103699 . - . ID=Phyra76078;Parent=Phyra76078;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 103154 103487 . - 0 ID=Phyra76078;Parent=Phyra76078;rank=2 scaffold_16 . exon 103154 103487 . - . ID=Phyra76078.2;Parent=Phyra76078;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 103560 103699 . - 0 ID=Phyra76078;Parent=Phyra76078;rank=1 scaffold_16 . exon 103560 103699 . - . ID=Phyra76078.1;Parent=Phyra76078;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 104091 106573 . - . ID=Phyra76079;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000033;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 104091 106573 . - . ID=Phyra76079;Parent=Phyra76079;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 104091 104691 . - 0 ID=Phyra76079;Parent=Phyra76079;rank=8 scaffold_16 . exon 104091 104691 . - . ID=Phyra76079.8;Parent=Phyra76079;constitutive=1;ensembl_phase=2;rank=8 scaffold_16 . CDS 104761 104930 . - 0 ID=Phyra76079;Parent=Phyra76079;rank=7 scaffold_16 . exon 104761 104930 . - . ID=Phyra76079.7;Parent=Phyra76079;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_16 . CDS 105000 105281 . - 0 ID=Phyra76079;Parent=Phyra76079;rank=6 scaffold_16 . exon 105000 105281 . - . ID=Phyra76079.6;Parent=Phyra76079;constitutive=1;rank=6 scaffold_16 . CDS 105364 105546 . - 0 ID=Phyra76079;Parent=Phyra76079;rank=5 scaffold_16 . exon 105364 105546 . - . ID=Phyra76079.5;Parent=Phyra76079;constitutive=1;rank=5 scaffold_16 . CDS 105604 105687 . - 0 ID=Phyra76079;Parent=Phyra76079;rank=4 scaffold_16 . exon 105604 105687 . - . ID=Phyra76079.4;Parent=Phyra76079;constitutive=1;rank=4 scaffold_16 . CDS 105762 106038 . - 0 ID=Phyra76079;Parent=Phyra76079;rank=3 scaffold_16 . exon 105762 106038 . - . ID=Phyra76079.3;Parent=Phyra76079;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 106112 106313 . - 0 ID=Phyra76079;Parent=Phyra76079;rank=2 scaffold_16 . exon 106112 106313 . - . ID=Phyra76079.2;Parent=Phyra76079;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 106543 106573 . - 0 ID=Phyra76079;Parent=Phyra76079;rank=1 scaffold_16 . exon 106543 106573 . - . ID=Phyra76079.1;Parent=Phyra76079;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 106844 108556 . - . ID=Phyra76080;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000034;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 106844 108556 . - . ID=Phyra76080;Parent=Phyra76080;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 106844 108556 . - 0 ID=Phyra76080;Parent=Phyra76080;rank=1 scaffold_16 . exon 106844 108556 . - . ID=Phyra76080.1;Parent=Phyra76080;constitutive=1;rank=1 scaffold_16 . biological_region 110331 110338 0.999 - . logic_name=eponine scaffold_16 . biological_region 112130 112135 0.999 + . logic_name=eponine scaffold_16 . biological_region 112393 112405 0.999 - . logic_name=eponine scaffold_16 . biological_region 112454 112458 0.999 + . logic_name=eponine scaffold_16 . biological_region 113006 113009 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 112052 112615 . - . ID=Phyra71385;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000005;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 112052 112615 . - . ID=Phyra71385;Parent=Phyra71385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 112052 112615 . - 0 ID=Phyra71385;Parent=Phyra71385;rank=1 scaffold_16 . exon 112052 112615 . - . ID=Phyra71385.1;Parent=Phyra71385;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 112836 114268 . + . ID=Phyra71386;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000006;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 112836 114268 . + . ID=Phyra71386;Parent=Phyra71386;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 112836 113744 . + 0 ID=Phyra71386;Parent=Phyra71386;rank=1 scaffold_16 . exon 112836 113744 . + . ID=Phyra71386.1;Parent=Phyra71386;constitutive=1;rank=1 scaffold_16 . CDS 113813 114268 . + 0 ID=Phyra71386;Parent=Phyra71386;rank=2 scaffold_16 . exon 113813 114268 . + . ID=Phyra71386.2;Parent=Phyra71386;constitutive=1;rank=2 scaffold_16 ensembl protein_coding_gene 110107 111861 . + . ID=Phyra76081;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000035;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 110107 111861 . + . ID=Phyra76081;Parent=Phyra76081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 110107 111861 . + 0 ID=Phyra76081;Parent=Phyra76081;rank=1 scaffold_16 . exon 110107 111861 . + . ID=Phyra76081.1;Parent=Phyra76081;constitutive=1;rank=1 scaffold_16 . biological_region 134621 134622 0.999 - . logic_name=eponine scaffold_16 . repeat_region 135198 135219 . ? . description=trf scaffold_16 . repeat_region 135198 135219 . ? . description=dust scaffold_16 . biological_region 136299 136301 0.999 + . logic_name=eponine scaffold_16 . biological_region 136672 136674 0.999 + . logic_name=eponine scaffold_16 . biological_region 136840 136840 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 137761 139368 . - . ID=Phyra71387;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000007;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 137761 139368 . - . ID=Phyra71387;Parent=Phyra71387;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 137761 139368 . - 0 ID=Phyra71387;Parent=Phyra71387;rank=1 scaffold_16 . exon 137761 139368 . - . ID=Phyra71387.1;Parent=Phyra71387;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 134792 137528 . + . ID=Phyra76085;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000039;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 134792 137528 . + . ID=Phyra76085;Parent=Phyra76085;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 134792 136464 . + 0 ID=Phyra76085;Parent=Phyra76085;rank=1 scaffold_16 . exon 134792 136464 . + . ID=Phyra76085.1;Parent=Phyra76085;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 136589 137528 . + 0 ID=Phyra76085;Parent=Phyra76085;rank=2 scaffold_16 . exon 136589 137528 . + . ID=Phyra76085.2;Parent=Phyra76085;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 ensembl protein_coding_gene 133560 134588 . - . ID=Phyra94365;biotype=protein_coding;external_name=C_scaffold_16000022;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 133560 134588 . - . ID=Phyra94365;Parent=Phyra94365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 133560 133563 . - 0 ID=Phyra94365;Parent=Phyra94365;rank=3 scaffold_16 . exon 133560 133563 . - . ID=Phyra94365.3;Parent=Phyra94365;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 133732 134359 . - 0 ID=Phyra94365;Parent=Phyra94365;rank=2 scaffold_16 . exon 133732 134359 . - . ID=Phyra94365.2;Parent=Phyra94365;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 134414 134588 . - 0 ID=Phyra94365;Parent=Phyra94365;rank=1 scaffold_16 . exon 134414 134588 . - . ID=Phyra94365.1;Parent=Phyra94365;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 140325 141558 . - . ID=Phyra76087;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000041;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 140325 141558 . - . ID=Phyra76087;Parent=Phyra76087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 140325 140664 . - 0 ID=Phyra76087;Parent=Phyra76087;rank=3 scaffold_16 . exon 140325 140664 . - . ID=Phyra76087.3;Parent=Phyra76087;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 140732 140919 . - 0 ID=Phyra76087;Parent=Phyra76087;rank=2 scaffold_16 . exon 140732 140919 . - . ID=Phyra76087.2;Parent=Phyra76087;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_16 . CDS 140986 141558 . - 0 ID=Phyra76087;Parent=Phyra76087;rank=1 scaffold_16 . exon 140986 141558 . - . ID=Phyra76087.1;Parent=Phyra76087;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 147623 148677 . + . ID=Phyra76088;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000042;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 147623 148677 . + . ID=Phyra76088;Parent=Phyra76088;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 147623 147767 . + 0 ID=Phyra76088;Parent=Phyra76088;rank=1 scaffold_16 . exon 147623 147767 . + . ID=Phyra76088.1;Parent=Phyra76088;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 147839 147975 . + 0 ID=Phyra76088;Parent=Phyra76088;rank=2 scaffold_16 . exon 147839 147975 . + . ID=Phyra76088.2;Parent=Phyra76088;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 148036 148155 . + 0 ID=Phyra76088;Parent=Phyra76088;rank=3 scaffold_16 . exon 148036 148155 . + . ID=Phyra76088.3;Parent=Phyra76088;constitutive=1;rank=3 scaffold_16 . CDS 148234 148677 . + 0 ID=Phyra76088;Parent=Phyra76088;rank=4 scaffold_16 . exon 148234 148677 . + . ID=Phyra76088.4;Parent=Phyra76088;constitutive=1;rank=4 scaffold_16 . repeat_region 150581 150634 . ? . description=trf scaffold_16 . repeat_region 152423 152463 . ? . description=dust scaffold_16 . repeat_region 152566 152611 . ? . description=dust scaffold_16 ensembl protein_coding_gene 148927 150357 . + . ID=Phyra76089;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000043;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 148927 150357 . + . ID=Phyra76089;Parent=Phyra76089;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 148927 148951 . + 0 ID=Phyra76089;Parent=Phyra76089;rank=1 scaffold_16 . exon 148927 148951 . + . ID=Phyra76089.1;Parent=Phyra76089;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 149015 149086 . + 0 ID=Phyra76089;Parent=Phyra76089;rank=2 scaffold_16 . exon 149015 149086 . + . ID=Phyra76089.2;Parent=Phyra76089;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 149174 149401 . + 0 ID=Phyra76089;Parent=Phyra76089;rank=3 scaffold_16 . exon 149174 149401 . + . ID=Phyra76089.3;Parent=Phyra76089;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 149466 149652 . + 0 ID=Phyra76089;Parent=Phyra76089;rank=4 scaffold_16 . exon 149466 149652 . + . ID=Phyra76089.4;Parent=Phyra76089;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_16 . CDS 149716 149779 . + 0 ID=Phyra76089;Parent=Phyra76089;rank=5 scaffold_16 . exon 149716 149779 . + . ID=Phyra76089.5;Parent=Phyra76089;constitutive=1;ensembl_phase=2;rank=5 scaffold_16 . CDS 149854 150154 . + 0 ID=Phyra76089;Parent=Phyra76089;rank=6 scaffold_16 . exon 149854 150154 . + . ID=Phyra76089.6;Parent=Phyra76089;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_16 . CDS 150227 150357 . + 0 ID=Phyra76089;Parent=Phyra76089;rank=7 scaffold_16 . exon 150227 150357 . + . ID=Phyra76089.7;Parent=Phyra76089;constitutive=1;ensembl_phase=1;rank=7 scaffold_16 ensembl protein_coding_gene 150545 152830 . - . ID=Phyra76090;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000044;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 150545 152830 . - . ID=Phyra76090;Parent=Phyra76090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 150545 152830 . - 0 ID=Phyra76090;Parent=Phyra76090;rank=1 scaffold_16 . exon 150545 152830 . - . ID=Phyra76090.1;Parent=Phyra76090;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 152967 154140 . + . ID=Phyra76091;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000045;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 152967 154140 . + . ID=Phyra76091;Parent=Phyra76091;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 152967 153248 . + 0 ID=Phyra76091;Parent=Phyra76091;rank=1 scaffold_16 . exon 152967 153248 . + . ID=Phyra76091.1;Parent=Phyra76091;constitutive=1;rank=1 scaffold_16 . CDS 153319 153396 . + 0 ID=Phyra76091;Parent=Phyra76091;rank=2 scaffold_16 . exon 153319 153396 . + . ID=Phyra76091.2;Parent=Phyra76091;constitutive=1;rank=2 scaffold_16 . CDS 153529 153594 . + 0 ID=Phyra76091;Parent=Phyra76091;rank=3 scaffold_16 . exon 153529 153594 . + . ID=Phyra76091.3;Parent=Phyra76091;constitutive=1;rank=3 scaffold_16 . CDS 153671 153777 . + 0 ID=Phyra76091;Parent=Phyra76091;rank=4 scaffold_16 . exon 153671 153777 . + . ID=Phyra76091.4;Parent=Phyra76091;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_16 . CDS 153867 154140 . + 0 ID=Phyra76091;Parent=Phyra76091;rank=5 scaffold_16 . exon 153867 154140 . + . ID=Phyra76091.5;Parent=Phyra76091;constitutive=1;ensembl_phase=2;rank=5 scaffold_16 . repeat_region 169982 169989 . ? . description=dust scaffold_16 . repeat_region 174715 174722 . ? . description=dust scaffold_16 . repeat_region 175889 175899 . ? . description=dust scaffold_16 . repeat_region 175942 175986 . ? . description=trf scaffold_16 . repeat_region 175978 176032 . ? . description=trf scaffold_16 . repeat_region 175982 176031 . ? . description=trf scaffold_16 . repeat_region 177770 177876 . ? . description=dust scaffold_16 ensembl protein_coding_gene 174335 175331 . - . ID=Phyra76092;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000046;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 174335 175331 . - . ID=Phyra76092;Parent=Phyra76092;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 174335 174353 . - 0 ID=Phyra76092;Parent=Phyra76092;rank=4 scaffold_16 . exon 174335 174353 . - . ID=Phyra76092.4;Parent=Phyra76092;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . CDS 174385 174499 . - 0 ID=Phyra76092;Parent=Phyra76092;rank=3 scaffold_16 . exon 174385 174499 . - . ID=Phyra76092.3;Parent=Phyra76092;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_16 . CDS 174557 175045 . - 0 ID=Phyra76092;Parent=Phyra76092;rank=2 scaffold_16 . exon 174557 175045 . - . ID=Phyra76092.2;Parent=Phyra76092;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 175127 175331 . - 0 ID=Phyra76092;Parent=Phyra76092;rank=1 scaffold_16 . exon 175127 175331 . - . ID=Phyra76092.1;Parent=Phyra76092;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 177992 179358 . + . ID=Phyra76093;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000047;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 177992 179358 . + . ID=Phyra76093;Parent=Phyra76093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 177992 178145 . + 0 ID=Phyra76093;Parent=Phyra76093;rank=1 scaffold_16 . exon 177992 178145 . + . ID=Phyra76093.1;Parent=Phyra76093;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 178281 178363 . + 0 ID=Phyra76093;Parent=Phyra76093;rank=2 scaffold_16 . exon 178281 178363 . + . ID=Phyra76093.2;Parent=Phyra76093;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 178430 178855 . + 0 ID=Phyra76093;Parent=Phyra76093;rank=3 scaffold_16 . exon 178430 178855 . + . ID=Phyra76093.3;Parent=Phyra76093;constitutive=1;rank=3 scaffold_16 . CDS 179221 179358 . + 0 ID=Phyra76093;Parent=Phyra76093;rank=4 scaffold_16 . biological_region 178527 178531 0.999 + . logic_name=eponine scaffold_16 . biological_region 178612 178612 0.999 + . logic_name=eponine scaffold_16 . biological_region 180057 180061 0.999 + . logic_name=eponine scaffold_16 . biological_region 180763 180767 0.999 + . logic_name=eponine scaffold_16 . biological_region 181479 181483 0.999 + . logic_name=eponine scaffold_16 . biological_region 181613 181615 0.999 - . logic_name=eponine scaffold_16 . biological_region 184137 184137 0.999 + . logic_name=eponine scaffold_16 . biological_region 186677 186681 0.999 + . logic_name=eponine scaffold_16 . biological_region 187382 187385 0.999 + . logic_name=eponine scaffold_16 . biological_region 188098 188102 0.999 + . logic_name=eponine scaffold_16 . biological_region 188232 188234 0.999 - . logic_name=eponine scaffold_16 . exon 179221 179358 . + . ID=Phyra76093.4;Parent=Phyra76093;constitutive=1;rank=4 scaffold_16 ensembl protein_coding_gene 181427 182686 . + . ID=Phyra76094;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000048;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 181427 182686 . + . ID=Phyra76094;Parent=Phyra76094;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 181427 182686 . + 0 ID=Phyra76094;Parent=Phyra76094;rank=1 scaffold_16 . exon 181427 182686 . + . ID=Phyra76094.1;Parent=Phyra76094;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 183658 184527 . + . ID=Phyra76095;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000049;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 183658 184527 . + . ID=Phyra76095;Parent=Phyra76095;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 183658 184527 . + 0 ID=Phyra76095;Parent=Phyra76095;rank=1 scaffold_16 . exon 183658 184527 . + . ID=Phyra76095.1;Parent=Phyra76095;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 188046 189305 . + . ID=Phyra76096;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000050;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 188046 189305 . + . ID=Phyra76096;Parent=Phyra76096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 188046 189305 . + 0 ID=Phyra76096;Parent=Phyra76096;rank=1 scaffold_16 . exon 188046 189305 . + . ID=Phyra76096.1;Parent=Phyra76096;constitutive=1;rank=1 scaffold_16 . repeat_region 197431 197450 . ? . description=trf scaffold_16 ensembl protein_coding_gene 197480 198814 . + . ID=Phyra71388;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000008;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 197480 198814 . + . ID=Phyra71388;Parent=Phyra71388;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 197480 197509 . + 0 ID=Phyra71388;Parent=Phyra71388;rank=1 scaffold_16 . exon 197480 197509 . + . ID=Phyra71388.1;Parent=Phyra71388;constitutive=1;rank=1 scaffold_16 . CDS 197595 198633 . + 0 ID=Phyra71388;Parent=Phyra71388;rank=2 scaffold_16 . exon 197595 198633 . + . ID=Phyra71388.2;Parent=Phyra71388;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 198711 198814 . + 0 ID=Phyra71388;Parent=Phyra71388;rank=3 scaffold_16 ensembl protein_coding_gene 190277 192701 . + . ID=Phyra76097;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000051;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 190277 192701 . + . ID=Phyra76097;Parent=Phyra76097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 190277 191093 . + 0 ID=Phyra76097;Parent=Phyra76097;rank=1 scaffold_16 . exon 190277 191093 . + . ID=Phyra76097.1;Parent=Phyra76097;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 191432 191681 . + 0 ID=Phyra76097;Parent=Phyra76097;rank=2 scaffold_16 . exon 191432 191681 . + . ID=Phyra76097.2;Parent=Phyra76097;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 191754 192040 . + 0 ID=Phyra76097;Parent=Phyra76097;rank=3 scaffold_16 . exon 191754 192040 . + . ID=Phyra76097.3;Parent=Phyra76097;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 192133 192701 . + 0 ID=Phyra76097;Parent=Phyra76097;rank=4 scaffold_16 . exon 192133 192701 . + . ID=Phyra76097.4;Parent=Phyra76097;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 ensembl protein_coding_gene 192967 194909 . + . ID=Phyra76098;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000052;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 192967 194909 . + . ID=Phyra76098;Parent=Phyra76098;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 192967 193159 . + 0 ID=Phyra76098;Parent=Phyra76098;rank=1 scaffold_16 . exon 192967 193159 . + . ID=Phyra76098.1;Parent=Phyra76098;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 193232 193301 . + 0 ID=Phyra76098;Parent=Phyra76098;rank=2 scaffold_16 . exon 193232 193301 . + . ID=Phyra76098.2;Parent=Phyra76098;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 193376 193637 . + 0 ID=Phyra76098;Parent=Phyra76098;rank=3 scaffold_16 . exon 193376 193637 . + . ID=Phyra76098.3;Parent=Phyra76098;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 193725 193838 . + 0 ID=Phyra76098;Parent=Phyra76098;rank=4 scaffold_16 . exon 193725 193838 . + . ID=Phyra76098.4;Parent=Phyra76098;constitutive=1;rank=4 scaffold_16 . CDS 193950 194006 . + 0 ID=Phyra76098;Parent=Phyra76098;rank=5 scaffold_16 . exon 193950 194006 . + . ID=Phyra76098.5;Parent=Phyra76098;constitutive=1;rank=5 scaffold_16 . CDS 194068 194298 . + 0 ID=Phyra76098;Parent=Phyra76098;rank=6 scaffold_16 . exon 194068 194298 . + . ID=Phyra76098.6;Parent=Phyra76098;constitutive=1;rank=6 scaffold_16 . CDS 194382 194558 . + 0 ID=Phyra76098;Parent=Phyra76098;rank=7 scaffold_16 . exon 194382 194558 . + . ID=Phyra76098.7;Parent=Phyra76098;constitutive=1;rank=7 scaffold_16 . CDS 194626 194724 . + 0 ID=Phyra76098;Parent=Phyra76098;rank=8 scaffold_16 . exon 194626 194724 . + . ID=Phyra76098.8;Parent=Phyra76098;constitutive=1;rank=8 scaffold_16 . CDS 194805 194909 . + 0 ID=Phyra76098;Parent=Phyra76098;rank=9 scaffold_16 . exon 194805 194909 . + . ID=Phyra76098.9;Parent=Phyra76098;constitutive=1;rank=9 scaffold_16 ensembl protein_coding_gene 195217 197211 . + . ID=Phyra76099;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000053;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 195217 197211 . + . ID=Phyra76099;Parent=Phyra76099;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 195217 195366 . + 0 ID=Phyra76099;Parent=Phyra76099;rank=1 scaffold_16 . exon 195217 195366 . + . ID=Phyra76099.1;Parent=Phyra76099;constitutive=1;rank=1 scaffold_16 . CDS 195475 196381 . + 0 ID=Phyra76099;Parent=Phyra76099;rank=2 scaffold_16 . exon 195475 196381 . + . ID=Phyra76099.2;Parent=Phyra76099;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 196452 197075 . + 0 ID=Phyra76099;Parent=Phyra76099;rank=3 scaffold_16 . exon 196452 197075 . + . ID=Phyra76099.3;Parent=Phyra76099;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 197144 197211 . + 0 ID=Phyra76099;Parent=Phyra76099;rank=4 scaffold_16 . exon 197144 197211 . + . ID=Phyra76099.4;Parent=Phyra76099;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . exon 198711 198814 . + . ID=Phyra71388.3;Parent=Phyra71388;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 ensembl protein_coding_gene 199298 211926 . + . ID=Phyra94368;biotype=protein_coding;external_name=C_scaffold_16000025;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 199298 211926 . + . ID=Phyra94368;Parent=Phyra94368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 199298 199300 . + 0 ID=Phyra94368;Parent=Phyra94368;rank=1 scaffold_16 . exon 199298 199300 . + . ID=Phyra94368.1;Parent=Phyra94368;constitutive=1;rank=1 scaffold_16 . CDS 199385 199504 . + 0 ID=Phyra94368;Parent=Phyra94368;rank=2 scaffold_16 . exon 199385 199504 . + . ID=Phyra94368.2;Parent=Phyra94368;constitutive=1;rank=2 scaffold_16 . CDS 199660 208197 . + 0 ID=Phyra94368;Parent=Phyra94368;rank=3 scaffold_16 . exon 199660 208197 . + . ID=Phyra94368.3;Parent=Phyra94368;constitutive=1;rank=3 scaffold_16 . CDS 208234 209401 . + 0 ID=Phyra94368;Parent=Phyra94368;rank=4 scaffold_16 . CDS 209441 210919 . + 0 ID=Phyra94368;Parent=Phyra94368;rank=5 scaffold_16 . CDS 210944 211926 . + 0 ID=Phyra94368;Parent=Phyra94368;rank=6 scaffold_16 . biological_region 209827 209827 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 212868 213290 . + . ID=Phyra71389;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000009;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 212868 213290 . + . ID=Phyra71389;Parent=Phyra71389;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 212868 213290 . + 0 ID=Phyra71389;Parent=Phyra71389;rank=1 scaffold_16 . exon 212868 213290 . + . ID=Phyra71389.1;Parent=Phyra71389;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 217399 218412 . - . ID=Phyra76104;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000058;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 217399 218412 . - . ID=Phyra76104;Parent=Phyra76104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 217399 217422 . - 0 ID=Phyra76104;Parent=Phyra76104;rank=4 scaffold_16 . exon 217399 217422 . - . ID=Phyra76104.4;Parent=Phyra76104;constitutive=1;rank=4 scaffold_16 . CDS 217524 217773 . - 0 ID=Phyra76104;Parent=Phyra76104;rank=3 scaffold_16 . exon 217524 217773 . - . ID=Phyra76104.3;Parent=Phyra76104;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 217851 217955 . - 0 ID=Phyra76104;Parent=Phyra76104;rank=2 scaffold_16 . exon 217851 217955 . - . ID=Phyra76104.2;Parent=Phyra76104;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . CDS 218087 218412 . - 0 ID=Phyra76104;Parent=Phyra76104;rank=1 scaffold_16 . exon 218087 218412 . - . ID=Phyra76104.1;Parent=Phyra76104;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . exon 208234 209401 . + . ID=Phyra94368.4;Parent=Phyra94368;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_16 . exon 209441 210919 . + . ID=Phyra94368.5;Parent=Phyra94368;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_16 . exon 210944 211926 . + . ID=Phyra94368.6;Parent=Phyra94368;constitutive=1;ensembl_phase=1;rank=6 scaffold_16 ensembl protein_coding_gene 212062 212646 . - . ID=Phyra94371;biotype=protein_coding;external_name=C_scaffold_16000028;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 212062 212646 . - . ID=Phyra94371;Parent=Phyra94371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 212062 212359 . - 0 ID=Phyra94371;Parent=Phyra94371;rank=2 scaffold_16 . exon 212062 212359 . - . ID=Phyra94371.2;Parent=Phyra94371;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 212429 212646 . - 0 ID=Phyra94371;Parent=Phyra94371;rank=1 scaffold_16 . exon 212429 212646 . - . ID=Phyra94371.1;Parent=Phyra94371;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 213852 215090 . - . ID=Phyra94374;biotype=protein_coding;external_name=C_scaffold_16000031;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 213852 215090 . - . ID=Phyra94374;Parent=Phyra94374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 213852 213896 . - 0 ID=Phyra94374;Parent=Phyra94374;rank=4 scaffold_16 . exon 213852 213896 . - . ID=Phyra94374.4;Parent=Phyra94374;constitutive=1;rank=4 scaffold_16 . CDS 214029 214308 . - 0 ID=Phyra94374;Parent=Phyra94374;rank=3 scaffold_16 . exon 214029 214308 . - . ID=Phyra94374.3;Parent=Phyra94374;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 214366 214496 . - 0 ID=Phyra94374;Parent=Phyra94374;rank=2 scaffold_16 . exon 214366 214496 . - . ID=Phyra94374.2;Parent=Phyra94374;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_16 . CDS 214776 215090 . - 0 ID=Phyra94374;Parent=Phyra94374;rank=1 scaffold_16 . exon 214776 215090 . - . ID=Phyra94374.1;Parent=Phyra94374;constitutive=1;rank=1 scaffold_16 . repeat_region 219923 219941 . ? . description=dust scaffold_16 ensembl protein_coding_gene 219533 220273 . + . ID=Phyra76105;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000059;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 219533 220273 . + . ID=Phyra76105;Parent=Phyra76105;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 219533 220273 . + 0 ID=Phyra76105;Parent=Phyra76105;rank=1 scaffold_16 . exon 219533 220273 . + . ID=Phyra76105.1;Parent=Phyra76105;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 220734 221855 . - . ID=Phyra76106;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000060;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 220734 221855 . - . ID=Phyra76106;Parent=Phyra76106;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 220734 220968 . - 0 ID=Phyra76106;Parent=Phyra76106;rank=3 scaffold_16 . exon 220734 220968 . - . ID=Phyra76106.3;Parent=Phyra76106;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 221045 221329 . - 0 ID=Phyra76106;Parent=Phyra76106;rank=2 scaffold_16 . exon 221045 221329 . - . ID=Phyra76106.2;Parent=Phyra76106;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . CDS 221404 221855 . - 0 ID=Phyra76106;Parent=Phyra76106;rank=1 scaffold_16 . exon 221404 221855 . - . ID=Phyra76106.1;Parent=Phyra76106;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 223068 224594 . + . ID=Phyra76107;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000061;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 223068 224594 . + . ID=Phyra76107;Parent=Phyra76107;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 223068 224594 . + 0 ID=Phyra76107;Parent=Phyra76107;rank=1 scaffold_16 . exon 223068 224594 . + . ID=Phyra76107.1;Parent=Phyra76107;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 225046 226631 . + . ID=Phyra76108;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000062;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 225046 226631 . + . ID=Phyra76108;Parent=Phyra76108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 225046 225310 . + 0 ID=Phyra76108;Parent=Phyra76108;rank=1 scaffold_16 . exon 225046 225310 . + . ID=Phyra76108.1;Parent=Phyra76108;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 225385 226631 . + 0 ID=Phyra76108;Parent=Phyra76108;rank=2 scaffold_16 . exon 225385 226631 . + . ID=Phyra76108.2;Parent=Phyra76108;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 ensembl protein_coding_gene 227237 228673 . + . ID=Phyra76109;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000063;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 227237 228673 . + . ID=Phyra76109;Parent=Phyra76109;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 227237 228673 . + 0 ID=Phyra76109;Parent=Phyra76109;rank=1 scaffold_16 . exon 227237 228673 . + . ID=Phyra76109.1;Parent=Phyra76109;constitutive=1;rank=1 scaffold_16 . biological_region 229039 229040 0.999 + . logic_name=eponine scaffold_16 . biological_region 230593 230597 0.999 - . logic_name=eponine scaffold_16 . biological_region 231133 231137 0.999 + . logic_name=eponine scaffold_16 . biological_region 231779 231784 0.999 + . logic_name=eponine scaffold_16 . biological_region 231836 231837 0.999 - . logic_name=eponine scaffold_16 . biological_region 231863 231866 0.999 - . logic_name=eponine scaffold_16 . biological_region 233296 233298 0.999 - . logic_name=eponine scaffold_16 . biological_region 234482 234485 0.999 - . logic_name=eponine scaffold_16 . biological_region 235255 235256 0.999 - . logic_name=eponine scaffold_16 . biological_region 236593 236595 0.999 - . logic_name=eponine scaffold_16 . biological_region 236641 236642 0.999 - . logic_name=eponine scaffold_16 . biological_region 237304 237307 0.999 + . logic_name=eponine scaffold_16 . biological_region 237322 237326 0.999 + . logic_name=eponine scaffold_16 . biological_region 237365 237367 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 230395 230910 . + . ID=Phyra76111;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000065;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 230395 230910 . + . ID=Phyra76111;Parent=Phyra76111;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 230395 230910 . + 0 ID=Phyra76111;Parent=Phyra76111;rank=1 scaffold_16 . exon 230395 230910 . + . ID=Phyra76111.1;Parent=Phyra76111;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 231134 232135 . - . ID=Phyra76112;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000066;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 231134 232135 . - . ID=Phyra76112;Parent=Phyra76112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 231134 232135 . - 0 ID=Phyra76112;Parent=Phyra76112;rank=1 scaffold_16 . exon 231134 232135 . - . ID=Phyra76112.1;Parent=Phyra76112;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 233044 235338 . - . ID=Phyra76113;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000067;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 233044 235338 . - . ID=Phyra76113;Parent=Phyra76113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 233044 235338 . - 0 ID=Phyra76113;Parent=Phyra76113;rank=1 scaffold_16 . exon 233044 235338 . - . ID=Phyra76113.1;Parent=Phyra76113;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 235683 236648 . + . ID=Phyra76114;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000068;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 235683 236648 . + . ID=Phyra76114;Parent=Phyra76114;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 235683 235884 . + 0 ID=Phyra76114;Parent=Phyra76114;rank=1 scaffold_16 . exon 235683 235884 . + . ID=Phyra76114.1;Parent=Phyra76114;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 235924 236054 . + 0 ID=Phyra76114;Parent=Phyra76114;rank=2 scaffold_16 . exon 235924 236054 . + . ID=Phyra76114.2;Parent=Phyra76114;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 236132 236252 . + 0 ID=Phyra76114;Parent=Phyra76114;rank=3 scaffold_16 . exon 236132 236252 . + . ID=Phyra76114.3;Parent=Phyra76114;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_16 . CDS 236344 236648 . + 0 ID=Phyra76114;Parent=Phyra76114;rank=4 scaffold_16 . exon 236344 236648 . + . ID=Phyra76114.4;Parent=Phyra76114;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 ensembl protein_coding_gene 237292 238998 . + . ID=Phyra76115;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000069;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 237292 238998 . + . ID=Phyra76115;Parent=Phyra76115;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 237292 238998 . + 0 ID=Phyra76115;Parent=Phyra76115;rank=1 scaffold_16 . exon 237292 238998 . + . ID=Phyra76115.1;Parent=Phyra76115;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 228871 230148 . + . ID=Phyra94376;biotype=protein_coding;external_name=C_scaffold_16000033;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 228871 230148 . + . ID=Phyra94376;Parent=Phyra94376;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 228871 229224 . + 0 ID=Phyra94376;Parent=Phyra94376;rank=1 scaffold_16 . exon 228871 229224 . + . ID=Phyra94376.1;Parent=Phyra94376;constitutive=1;rank=1 scaffold_16 . CDS 229537 230148 . + 0 ID=Phyra94376;Parent=Phyra94376;rank=2 scaffold_16 . exon 229537 230148 . + . ID=Phyra94376.2;Parent=Phyra94376;constitutive=1;rank=2 scaffold_16 . repeat_region 240760 240779 . ? . description=trf scaffold_16 . repeat_region 245045 245092 . ? . description=dust scaffold_16 . repeat_region 246375 246382 . ? . description=dust scaffold_16 ensembl protein_coding_gene 242798 243725 . - . ID=Phyra76117;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000071;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 242798 243725 . - . ID=Phyra76117;Parent=Phyra76117;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 242798 242859 . - 0 ID=Phyra76117;Parent=Phyra76117;rank=2 scaffold_16 . exon 242798 242859 . - . ID=Phyra76117.2;Parent=Phyra76117;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 242879 243725 . - 0 ID=Phyra76117;Parent=Phyra76117;rank=1 scaffold_16 . exon 242879 243725 . - . ID=Phyra76117.1;Parent=Phyra76117;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 245190 246009 . + . ID=Phyra76118;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000072;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 245190 246009 . + . ID=Phyra76118;Parent=Phyra76118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 245190 245588 . + 0 ID=Phyra76118;Parent=Phyra76118;rank=1 scaffold_16 . exon 245190 245588 . + . ID=Phyra76118.1;Parent=Phyra76118;constitutive=1;rank=1 scaffold_16 . CDS 245692 246009 . + 0 ID=Phyra76118;Parent=Phyra76118;rank=2 scaffold_16 . exon 245692 246009 . + . ID=Phyra76118.2;Parent=Phyra76118;constitutive=1;rank=2 scaffold_16 ensembl protein_coding_gene 246181 250418 . - . ID=Phyra76119;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000073;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 246181 250418 . - . ID=Phyra76119;Parent=Phyra76119;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 246181 246370 . - 0 ID=Phyra76119;Parent=Phyra76119;rank=5 scaffold_16 . exon 246181 246370 . - . ID=Phyra76119.5;Parent=Phyra76119;constitutive=1;ensembl_phase=2;rank=5 scaffold_16 . CDS 246441 246706 . - 0 ID=Phyra76119;Parent=Phyra76119;rank=4 scaffold_16 . exon 246441 246706 . - . ID=Phyra76119.4;Parent=Phyra76119;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_16 . CDS 246770 247702 . - 0 ID=Phyra76119;Parent=Phyra76119;rank=3 scaffold_16 . exon 246770 247702 . - . ID=Phyra76119.3;Parent=Phyra76119;constitutive=1;rank=3 scaffold_16 . CDS 247967 248027 . - 0 ID=Phyra76119;Parent=Phyra76119;rank=2 scaffold_16 . CDS 248179 250418 . - 0 ID=Phyra76119;Parent=Phyra76119;rank=1 scaffold_16 ensembl protein_coding_gene 239193 240870 . - . ID=Phyra94380;biotype=protein_coding;external_name=C_scaffold_16000037;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 239193 240870 . - . ID=Phyra94380;Parent=Phyra94380;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 239193 239444 . - 0 ID=Phyra94380;Parent=Phyra94380;rank=5 scaffold_16 . exon 239193 239444 . - . ID=Phyra94380.5;Parent=Phyra94380;constitutive=1;rank=5 scaffold_16 . CDS 239517 239594 . - 0 ID=Phyra94380;Parent=Phyra94380;rank=4 scaffold_16 . exon 239517 239594 . - . ID=Phyra94380.4;Parent=Phyra94380;constitutive=1;rank=4 scaffold_16 . CDS 239669 239861 . - 0 ID=Phyra94380;Parent=Phyra94380;rank=3 scaffold_16 . exon 239669 239861 . - . ID=Phyra94380.3;Parent=Phyra94380;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 239931 240070 . - 0 ID=Phyra94380;Parent=Phyra94380;rank=2 scaffold_16 . exon 239931 240070 . - . ID=Phyra94380.2;Parent=Phyra94380;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_16 . CDS 240136 240870 . - 0 ID=Phyra94380;Parent=Phyra94380;rank=1 scaffold_16 . exon 240136 240870 . - . ID=Phyra94380.1;Parent=Phyra94380;constitutive=1;rank=1 scaffold_16 . biological_region 248931 248934 0.999 - . logic_name=eponine scaffold_16 . biological_region 250160 250161 0.999 - . logic_name=eponine scaffold_16 . biological_region 250341 250343 0.999 - . logic_name=eponine scaffold_16 . biological_region 250507 250510 0.999 - . logic_name=eponine scaffold_16 . biological_region 253929 253931 0.999 - . logic_name=eponine scaffold_16 . biological_region 255171 255174 0.999 - . logic_name=eponine scaffold_16 . biological_region 255179 255183 0.999 + . logic_name=eponine scaffold_16 . biological_region 257377 257377 0.999 - . logic_name=eponine scaffold_16 . exon 247967 248027 . - . ID=Phyra76119.2;Parent=Phyra76119;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . exon 248179 250418 . - . ID=Phyra76119.1;Parent=Phyra76119;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 250710 251577 . + . ID=Phyra76120;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000074;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 250710 251577 . + . ID=Phyra76120;Parent=Phyra76120;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 250710 250800 . + 0 ID=Phyra76120;Parent=Phyra76120;rank=1 scaffold_16 . exon 250710 250800 . + . ID=Phyra76120.1;Parent=Phyra76120;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 250907 251350 . + 0 ID=Phyra76120;Parent=Phyra76120;rank=2 scaffold_16 . exon 250907 251350 . + . ID=Phyra76120.2;Parent=Phyra76120;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 251411 251577 . + 0 ID=Phyra76120;Parent=Phyra76120;rank=3 scaffold_16 . exon 251411 251577 . + . ID=Phyra76120.3;Parent=Phyra76120;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 ensembl protein_coding_gene 251705 252154 . - . ID=Phyra76121;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000075;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 251705 252154 . - . ID=Phyra76121;Parent=Phyra76121;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 251705 252154 . - 0 ID=Phyra76121;Parent=Phyra76121;rank=1 scaffold_16 . exon 251705 252154 . - . ID=Phyra76121.1;Parent=Phyra76121;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 252533 253954 . - . ID=Phyra76122;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000076;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 252533 253954 . - . ID=Phyra76122;Parent=Phyra76122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 252533 253954 . - 0 ID=Phyra76122;Parent=Phyra76122;rank=1 scaffold_16 . exon 252533 253954 . - . ID=Phyra76122.1;Parent=Phyra76122;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 255605 262951 . - . ID=Phyra76123;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000077;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 255605 262951 . - . ID=Phyra76123;Parent=Phyra76123;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 255605 260751 . - 0 ID=Phyra76123;Parent=Phyra76123;rank=6 scaffold_16 . exon 255605 260751 . - . ID=Phyra76123.6;Parent=Phyra76123;constitutive=1;ensembl_phase=1;rank=6 scaffold_16 . CDS 261001 261407 . - 0 ID=Phyra76123;Parent=Phyra76123;rank=5 scaffold_16 . CDS 261786 262411 . - 0 ID=Phyra76123;Parent=Phyra76123;rank=4 scaffold_16 . CDS 262498 262671 . - 0 ID=Phyra76123;Parent=Phyra76123;rank=3 scaffold_16 . CDS 262705 262805 . - 0 ID=Phyra76123;Parent=Phyra76123;rank=2 scaffold_16 . CDS 262927 262951 . - 0 ID=Phyra76123;Parent=Phyra76123;rank=1 scaffold_16 . repeat_region 266392 266527 . ? . description=trf scaffold_16 . repeat_region 266651 266684 . ? . description=dust scaffold_16 ensembl protein_coding_gene 267286 268954 . - . ID=Phyra42378;biotype=protein_coding;external_name=gwEuk.16.26.1;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 267286 268954 . - . ID=Phyra42378;Parent=Phyra42378;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 267286 267477 . - 0 ID=Phyra42378;Parent=Phyra42378;rank=10 scaffold_16 . exon 267286 267477 . - . ID=Phyra42378.10;Parent=Phyra42378;constitutive=1;rank=10 scaffold_16 . CDS 267569 267646 . - 0 ID=Phyra42378;Parent=Phyra42378;rank=9 scaffold_16 . exon 267569 267646 . - . ID=Phyra42378.9;Parent=Phyra42378;constitutive=1;rank=9 scaffold_16 . CDS 267729 267840 . - 0 ID=Phyra42378;Parent=Phyra42378;rank=8 scaffold_16 . CDS 267919 267996 . - 0 ID=Phyra42378;Parent=Phyra42378;rank=7 scaffold_16 . CDS 268085 268217 . - 0 ID=Phyra42378;Parent=Phyra42378;rank=6 scaffold_16 . CDS 268283 268329 . - 0 ID=Phyra42378;Parent=Phyra42378;rank=5 scaffold_16 . CDS 268406 268484 . - 0 ID=Phyra42378;Parent=Phyra42378;rank=4 scaffold_16 . CDS 268561 268624 . - 0 ID=Phyra42378;Parent=Phyra42378;rank=3 scaffold_16 . CDS 268692 268766 . - 0 ID=Phyra42378;Parent=Phyra42378;rank=2 scaffold_16 . CDS 268844 268954 . - 0 ID=Phyra42378;Parent=Phyra42378;rank=1 scaffold_16 . exon 261001 261407 . - . ID=Phyra76123.5;Parent=Phyra76123;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_16 . exon 261786 262411 . - . ID=Phyra76123.4;Parent=Phyra76123;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_16 . exon 262498 262671 . - . ID=Phyra76123.3;Parent=Phyra76123;constitutive=1;rank=3 scaffold_16 . exon 262705 262805 . - . ID=Phyra76123.2;Parent=Phyra76123;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . exon 262927 262951 . - . ID=Phyra76123.1;Parent=Phyra76123;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . biological_region 269411 269412 0.999 - . logic_name=eponine scaffold_16 . biological_region 269899 269902 0.999 + . logic_name=eponine scaffold_16 . biological_region 274047 274050 0.999 - . logic_name=eponine scaffold_16 . exon 267729 267840 . - . ID=Phyra42378.8;Parent=Phyra42378;constitutive=1;ensembl_phase=2;rank=8 scaffold_16 . exon 267919 267996 . - . ID=Phyra42378.7;Parent=Phyra42378;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_16 . exon 268085 268217 . - . ID=Phyra42378.6;Parent=Phyra42378;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_16 . exon 268283 268329 . - . ID=Phyra42378.5;Parent=Phyra42378;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_16 . exon 268406 268484 . - . ID=Phyra42378.4;Parent=Phyra42378;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_16 . exon 268561 268624 . - . ID=Phyra42378.3;Parent=Phyra42378;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_16 . exon 268692 268766 . - . ID=Phyra42378.2;Parent=Phyra42378;constitutive=1;rank=2 scaffold_16 . exon 268844 268954 . - . ID=Phyra42378.1;Parent=Phyra42378;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 269148 269995 . + . ID=Phyra76125;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000079;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 269148 269995 . + . ID=Phyra76125;Parent=Phyra76125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 269148 269461 . + 0 ID=Phyra76125;Parent=Phyra76125;rank=1 scaffold_16 . exon 269148 269461 . + . ID=Phyra76125.1;Parent=Phyra76125;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 269550 269934 . + 0 ID=Phyra76125;Parent=Phyra76125;rank=2 scaffold_16 . exon 269550 269934 . + . ID=Phyra76125.2;Parent=Phyra76125;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 269993 269995 . + 0 ID=Phyra76125;Parent=Phyra76125;rank=3 scaffold_16 . exon 269993 269995 . + . ID=Phyra76125.3;Parent=Phyra76125;constitutive=1;rank=3 scaffold_16 ensembl protein_coding_gene 270675 272952 . - . ID=Phyra76126;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000080;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 270675 272952 . - . ID=Phyra76126;Parent=Phyra76126;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 270675 270953 . - 0 ID=Phyra76126;Parent=Phyra76126;rank=6 scaffold_16 . exon 270675 270953 . - . ID=Phyra76126.6;Parent=Phyra76126;constitutive=1;rank=6 scaffold_16 . CDS 271024 271276 . - 0 ID=Phyra76126;Parent=Phyra76126;rank=5 scaffold_16 . exon 271024 271276 . - . ID=Phyra76126.5;Parent=Phyra76126;constitutive=1;ensembl_phase=2;rank=5 scaffold_16 . CDS 271347 271400 . - 0 ID=Phyra76126;Parent=Phyra76126;rank=4 scaffold_16 . exon 271347 271400 . - . ID=Phyra76126.4;Parent=Phyra76126;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_16 . CDS 271473 271861 . - 0 ID=Phyra76126;Parent=Phyra76126;rank=3 scaffold_16 . exon 271473 271861 . - . ID=Phyra76126.3;Parent=Phyra76126;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_16 . CDS 271941 272169 . - 0 ID=Phyra76126;Parent=Phyra76126;rank=2 scaffold_16 . exon 271941 272169 . - . ID=Phyra76126.2;Parent=Phyra76126;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 272261 272952 . - 0 ID=Phyra76126;Parent=Phyra76126;rank=1 scaffold_16 . exon 272261 272952 . - . ID=Phyra76126.1;Parent=Phyra76126;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 273759 274520 . + . ID=Phyra76127;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000081;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 273759 274520 . + . ID=Phyra76127;Parent=Phyra76127;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 273759 274520 . + 0 ID=Phyra76127;Parent=Phyra76127;rank=1 scaffold_16 . exon 273759 274520 . + . ID=Phyra76127.1;Parent=Phyra76127;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 274680 275874 . + . ID=Phyra76128;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000082;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 274680 275874 . + . ID=Phyra76128;Parent=Phyra76128;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 274680 275126 . + 0 ID=Phyra76128;Parent=Phyra76128;rank=1 scaffold_16 . exon 274680 275126 . + . ID=Phyra76128.1;Parent=Phyra76128;constitutive=1;rank=1 scaffold_16 . CDS 275157 275835 . + 0 ID=Phyra76128;Parent=Phyra76128;rank=2 scaffold_16 . exon 275157 275835 . + . ID=Phyra76128.2;Parent=Phyra76128;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 275855 275874 . + 0 ID=Phyra76128;Parent=Phyra76128;rank=3 scaffold_16 . exon 275855 275874 . + . ID=Phyra76128.3;Parent=Phyra76128;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . repeat_region 280442 280477 . ? . description=dust scaffold_16 . repeat_region 281042 281053 . ? . description=dust scaffold_16 . repeat_region 287186 287193 . ? . description=dust scaffold_16 ensembl protein_coding_gene 284541 285614 . - . ID=Phyra42402;biotype=protein_coding;external_name=gwEuk.16.50.1;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 284541 285614 . - . ID=Phyra42402;Parent=Phyra42402;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 284541 285474 . - 0 ID=Phyra42402;Parent=Phyra42402;rank=2 scaffold_16 . exon 284541 285474 . - . ID=Phyra42402.2;Parent=Phyra42402;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 285553 285614 . - 0 ID=Phyra42402;Parent=Phyra42402;rank=1 scaffold_16 . exon 285553 285614 . - . ID=Phyra42402.1;Parent=Phyra42402;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 278475 279043 . - . ID=Phyra71390;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000010;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 278475 279043 . - . ID=Phyra71390;Parent=Phyra71390;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 278475 278566 . - 0 ID=Phyra71390;Parent=Phyra71390;rank=4 scaffold_16 . exon 278475 278566 . - . ID=Phyra71390.4;Parent=Phyra71390;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 278645 278816 . - 0 ID=Phyra71390;Parent=Phyra71390;rank=3 scaffold_16 . exon 278645 278816 . - . ID=Phyra71390.3;Parent=Phyra71390;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_16 . CDS 278879 278934 . - 0 ID=Phyra71390;Parent=Phyra71390;rank=2 scaffold_16 . exon 278879 278934 . - . ID=Phyra71390.2;Parent=Phyra71390;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 279013 279043 . - 0 ID=Phyra71390;Parent=Phyra71390;rank=1 scaffold_16 . exon 279013 279043 . - . ID=Phyra71390.1;Parent=Phyra71390;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 280680 281610 . + . ID=Phyra71391;biotype=protein_coding;description=Ras-like proteinRas-related protein Ypt1 [Source:UniProtKB/TrEMBL%3BAcc:Q2QA06];external_name=YPT1;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 280680 281610 . + . ID=Phyra71391;Parent=Phyra71391;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 280680 280693 . + 0 ID=Phyra71391;Parent=Phyra71391;rank=1 scaffold_16 . exon 280680 280693 . + . ID=Phyra71391.1;Parent=Phyra71391;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 280764 280884 . + 0 ID=Phyra71391;Parent=Phyra71391;rank=2 scaffold_16 . exon 280764 280884 . + . ID=Phyra71391.2;Parent=Phyra71391;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 280981 281028 . + 0 ID=Phyra71391;Parent=Phyra71391;rank=3 scaffold_16 . exon 280981 281028 . + . ID=Phyra71391.3;Parent=Phyra71391;constitutive=1;rank=3 scaffold_16 . CDS 281119 281258 . + 0 ID=Phyra71391;Parent=Phyra71391;rank=4 scaffold_16 . exon 281119 281258 . + . ID=Phyra71391.4;Parent=Phyra71391;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_16 . CDS 281328 281610 . + 0 ID=Phyra71391;Parent=Phyra71391;rank=5 scaffold_16 . exon 281328 281610 . + . ID=Phyra71391.5;Parent=Phyra71391;constitutive=1;ensembl_phase=2;rank=5 scaffold_16 ensembl protein_coding_gene 282051 282998 . - . ID=Phyra76131;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000085;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 282051 282998 . - . ID=Phyra76131;Parent=Phyra76131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 282051 282178 . - 0 ID=Phyra76131;Parent=Phyra76131;rank=7 scaffold_16 . exon 282051 282178 . - . ID=Phyra76131.7;Parent=Phyra76131;constitutive=1;ensembl_phase=1;rank=7 scaffold_16 . CDS 282242 282269 . - 0 ID=Phyra76131;Parent=Phyra76131;rank=6 scaffold_16 . exon 282242 282269 . - . ID=Phyra76131.6;Parent=Phyra76131;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_16 . CDS 282328 282406 . - 0 ID=Phyra76131;Parent=Phyra76131;rank=5 scaffold_16 . exon 282328 282406 . - . ID=Phyra76131.5;Parent=Phyra76131;constitutive=1;ensembl_phase=2;rank=5 scaffold_16 . CDS 282481 282525 . - 0 ID=Phyra76131;Parent=Phyra76131;rank=4 scaffold_16 . exon 282481 282525 . - . ID=Phyra76131.4;Parent=Phyra76131;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_16 . CDS 282609 282652 . - 0 ID=Phyra76131;Parent=Phyra76131;rank=3 scaffold_16 . exon 282609 282652 . - . ID=Phyra76131.3;Parent=Phyra76131;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_16 . CDS 282706 282755 . - 0 ID=Phyra76131;Parent=Phyra76131;rank=2 scaffold_16 . exon 282706 282755 . - . ID=Phyra76131.2;Parent=Phyra76131;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 282833 282998 . - 0 ID=Phyra76131;Parent=Phyra76131;rank=1 scaffold_16 . exon 282833 282998 . - . ID=Phyra76131.1;Parent=Phyra76131;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 283248 284381 . + . ID=Phyra76132;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000086;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 283248 284381 . + . ID=Phyra76132;Parent=Phyra76132;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 283248 284381 . + 0 ID=Phyra76132;Parent=Phyra76132;rank=1 scaffold_16 . exon 283248 284381 . + . ID=Phyra76132.1;Parent=Phyra76132;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 287339 288679 . + . ID=Phyra76134;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000088;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 287339 288679 . + . ID=Phyra76134;Parent=Phyra76134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 287339 288132 . + 0 ID=Phyra76134;Parent=Phyra76134;rank=1 scaffold_16 . exon 287339 288132 . + . ID=Phyra76134.1;Parent=Phyra76134;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 288217 288679 . + 0 ID=Phyra76134;Parent=Phyra76134;rank=2 scaffold_16 . biological_region 293167 293170 0.999 + . logic_name=eponine scaffold_16 . repeat_region 295910 295933 . ? . description=trf scaffold_16 . exon 288217 288679 . + . ID=Phyra76134.2;Parent=Phyra76134;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 ensembl protein_coding_gene 288977 290061 . - . ID=Phyra76135;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000089;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 288977 290061 . - . ID=Phyra76135;Parent=Phyra76135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 288977 289456 . - 0 ID=Phyra76135;Parent=Phyra76135;rank=3 scaffold_16 . exon 288977 289456 . - . ID=Phyra76135.3;Parent=Phyra76135;constitutive=1;rank=3 scaffold_16 . CDS 289528 289624 . - 0 ID=Phyra76135;Parent=Phyra76135;rank=2 scaffold_16 . exon 289528 289624 . - . ID=Phyra76135.2;Parent=Phyra76135;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 289718 290061 . - 0 ID=Phyra76135;Parent=Phyra76135;rank=1 scaffold_16 . exon 289718 290061 . - . ID=Phyra76135.1;Parent=Phyra76135;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 290427 291140 . + . ID=Phyra76136;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000090;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 290427 291140 . + . ID=Phyra76136;Parent=Phyra76136;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 290427 290711 . + 0 ID=Phyra76136;Parent=Phyra76136;rank=1 scaffold_16 . exon 290427 290711 . + . ID=Phyra76136.1;Parent=Phyra76136;constitutive=1;rank=1 scaffold_16 . CDS 290802 290915 . + 0 ID=Phyra76136;Parent=Phyra76136;rank=2 scaffold_16 . exon 290802 290915 . + . ID=Phyra76136.2;Parent=Phyra76136;constitutive=1;rank=2 scaffold_16 . CDS 290985 291140 . + 0 ID=Phyra76136;Parent=Phyra76136;rank=3 scaffold_16 . exon 290985 291140 . + . ID=Phyra76136.3;Parent=Phyra76136;constitutive=1;rank=3 scaffold_16 ensembl protein_coding_gene 291237 292645 . - . ID=Phyra76137;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000091;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 291237 292645 . - . ID=Phyra76137;Parent=Phyra76137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 291237 291683 . - 0 ID=Phyra76137;Parent=Phyra76137;rank=4 scaffold_16 . exon 291237 291683 . - . ID=Phyra76137.4;Parent=Phyra76137;constitutive=1;rank=4 scaffold_16 . CDS 291748 292016 . - 0 ID=Phyra76137;Parent=Phyra76137;rank=3 scaffold_16 . exon 291748 292016 . - . ID=Phyra76137.3;Parent=Phyra76137;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 292124 292310 . - 0 ID=Phyra76137;Parent=Phyra76137;rank=2 scaffold_16 . exon 292124 292310 . - . ID=Phyra76137.2;Parent=Phyra76137;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 292370 292645 . - 0 ID=Phyra76137;Parent=Phyra76137;rank=1 scaffold_16 . exon 292370 292645 . - . ID=Phyra76137.1;Parent=Phyra76137;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 292953 294564 . + . ID=Phyra76138;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000092;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 292953 294564 . + . ID=Phyra76138;Parent=Phyra76138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 292953 293021 . + 0 ID=Phyra76138;Parent=Phyra76138;rank=1 scaffold_16 . exon 292953 293021 . + . ID=Phyra76138.1;Parent=Phyra76138;constitutive=1;rank=1 scaffold_16 . CDS 293113 294402 . + 0 ID=Phyra76138;Parent=Phyra76138;rank=2 scaffold_16 . exon 293113 294402 . + . ID=Phyra76138.2;Parent=Phyra76138;constitutive=1;rank=2 scaffold_16 . CDS 294439 294564 . + 0 ID=Phyra76138;Parent=Phyra76138;rank=3 scaffold_16 . exon 294439 294564 . + . ID=Phyra76138.3;Parent=Phyra76138;constitutive=1;rank=3 scaffold_16 ensembl protein_coding_gene 296875 299490 . + . ID=Phyra76139;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000093;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 296875 299490 . + . ID=Phyra76139;Parent=Phyra76139;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 296875 299490 . + 0 ID=Phyra76139;Parent=Phyra76139;rank=1 scaffold_16 . exon 296875 299490 . + . ID=Phyra76139.1;Parent=Phyra76139;constitutive=1;rank=1 scaffold_16 . repeat_region 305159 305198 . ? . description=dust scaffold_16 ensembl protein_coding_gene 302236 304944 . + . ID=Phyra76141;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000095;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 302236 304944 . + . ID=Phyra76141;Parent=Phyra76141;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 302236 304944 . + 0 ID=Phyra76141;Parent=Phyra76141;rank=1 scaffold_16 . exon 302236 304944 . + . ID=Phyra76141.1;Parent=Phyra76141;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 305280 305832 . + . ID=Phyra76142;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000096;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 305280 305832 . + . ID=Phyra76142;Parent=Phyra76142;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 305280 305598 . + 0 ID=Phyra76142;Parent=Phyra76142;rank=1 scaffold_16 . exon 305280 305598 . + . ID=Phyra76142.1;Parent=Phyra76142;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 305730 305760 . + 0 ID=Phyra76142;Parent=Phyra76142;rank=2 scaffold_16 . exon 305730 305760 . + . ID=Phyra76142.2;Parent=Phyra76142;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 305823 305832 . + 0 ID=Phyra76142;Parent=Phyra76142;rank=3 scaffold_16 . exon 305823 305832 . + . ID=Phyra76142.3;Parent=Phyra76142;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 ensembl protein_coding_gene 306343 309552 . - . ID=Phyra76143;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000097;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 306343 309552 . - . ID=Phyra76143;Parent=Phyra76143;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 306343 307749 . - 0 ID=Phyra76143;Parent=Phyra76143;rank=2 scaffold_16 . exon 306343 307749 . - . ID=Phyra76143.2;Parent=Phyra76143;constitutive=1;rank=2 scaffold_16 . CDS 308068 309552 . - 0 ID=Phyra76143;Parent=Phyra76143;rank=1 scaffold_16 ensembl protein_coding_gene 299679 300557 . - . ID=Phyra94384;biotype=protein_coding;external_name=C_scaffold_16000041;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 299679 300557 . - . ID=Phyra94384;Parent=Phyra94384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 299679 300557 . - 0 ID=Phyra94384;Parent=Phyra94384;rank=1 scaffold_16 . exon 299679 300557 . - . ID=Phyra94384.1;Parent=Phyra94384;constitutive=1;rank=1 scaffold_16 . repeat_region 310158 310184 . ? . description=trf scaffold_16 . biological_region 314861 314866 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 310193 312121 . + . ID=Phyra71393;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000013;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 310193 312121 . + . ID=Phyra71393;Parent=Phyra71393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 310193 312121 . + 0 ID=Phyra71393;Parent=Phyra71393;rank=1 scaffold_16 . exon 310193 312121 . + . ID=Phyra71393.1;Parent=Phyra71393;constitutive=1;rank=1 scaffold_16 . exon 308068 309552 . - . ID=Phyra76143.1;Parent=Phyra76143;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 312436 314467 . - . ID=Phyra76145;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000099;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 312436 314467 . - . ID=Phyra76145;Parent=Phyra76145;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 312436 312678 . - 0 ID=Phyra76145;Parent=Phyra76145;rank=4 scaffold_16 . exon 312436 312678 . - . ID=Phyra76145.4;Parent=Phyra76145;constitutive=1;rank=4 scaffold_16 . CDS 312755 313483 . - 0 ID=Phyra76145;Parent=Phyra76145;rank=3 scaffold_16 . exon 312755 313483 . - . ID=Phyra76145.3;Parent=Phyra76145;constitutive=1;rank=3 scaffold_16 . CDS 313567 313597 . - 0 ID=Phyra76145;Parent=Phyra76145;rank=2 scaffold_16 . exon 313567 313597 . - . ID=Phyra76145.2;Parent=Phyra76145;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 313674 314467 . - 0 ID=Phyra76145;Parent=Phyra76145;rank=1 scaffold_16 . exon 313674 314467 . - . ID=Phyra76145.1;Parent=Phyra76145;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 316728 317276 . + . ID=Phyra94392;biotype=protein_coding;external_name=C_scaffold_16000049;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 316728 317276 . + . ID=Phyra94392;Parent=Phyra94392;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 316728 317276 . + 0 ID=Phyra94392;Parent=Phyra94392;rank=1 scaffold_16 . exon 316728 317276 . + . ID=Phyra94392.1;Parent=Phyra94392;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 320298 321254 . - . ID=Phyra76148;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000102;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 320298 321254 . - . ID=Phyra76148;Parent=Phyra76148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 320298 321254 . - 0 ID=Phyra76148;Parent=Phyra76148;rank=1 scaffold_16 . exon 320298 321254 . - . ID=Phyra76148.1;Parent=Phyra76148;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 322456 324146 . + . ID=Phyra76149;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000103;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 322456 324146 . + . ID=Phyra76149;Parent=Phyra76149;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 322456 323554 . + 0 ID=Phyra76149;Parent=Phyra76149;rank=1 scaffold_16 . exon 322456 323554 . + . ID=Phyra76149.1;Parent=Phyra76149;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 323636 323702 . + 0 ID=Phyra76149;Parent=Phyra76149;rank=2 scaffold_16 . exon 323636 323702 . + . ID=Phyra76149.2;Parent=Phyra76149;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 323780 324146 . + 0 ID=Phyra76149;Parent=Phyra76149;rank=3 scaffold_16 . exon 323780 324146 . + . ID=Phyra76149.3;Parent=Phyra76149;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 ensembl protein_coding_gene 317367 320044 . + . ID=Phyra94393;biotype=protein_coding;external_name=C_scaffold_16000050;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 317367 320044 . + . ID=Phyra94393;Parent=Phyra94393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 317367 317433 . + 0 ID=Phyra94393;Parent=Phyra94393;rank=1 scaffold_16 . exon 317367 317433 . + . ID=Phyra94393.1;Parent=Phyra94393;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 317498 317597 . + 0 ID=Phyra94393;Parent=Phyra94393;rank=2 scaffold_16 . exon 317498 317597 . + . ID=Phyra94393.2;Parent=Phyra94393;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 317660 317856 . + 0 ID=Phyra94393;Parent=Phyra94393;rank=3 scaffold_16 . exon 317660 317856 . + . ID=Phyra94393.3;Parent=Phyra94393;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 318059 318201 . + 0 ID=Phyra94393;Parent=Phyra94393;rank=4 scaffold_16 . exon 318059 318201 . + . ID=Phyra94393.4;Parent=Phyra94393;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 318270 318516 . + 0 ID=Phyra94393;Parent=Phyra94393;rank=5 scaffold_16 . exon 318270 318516 . + . ID=Phyra94393.5;Parent=Phyra94393;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_16 . CDS 318586 318739 . + 0 ID=Phyra94393;Parent=Phyra94393;rank=6 scaffold_16 . exon 318586 318739 . + . ID=Phyra94393.6;Parent=Phyra94393;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_16 . CDS 318820 318880 . + 0 ID=Phyra94393;Parent=Phyra94393;rank=7 scaffold_16 . exon 318820 318880 . + . ID=Phyra94393.7;Parent=Phyra94393;constitutive=1;ensembl_phase=2;rank=7 scaffold_16 . CDS 318977 319084 . + 0 ID=Phyra94393;Parent=Phyra94393;rank=8 scaffold_16 . exon 318977 319084 . + . ID=Phyra94393.8;Parent=Phyra94393;constitutive=1;rank=8 scaffold_16 . CDS 319159 319307 . + 0 ID=Phyra94393;Parent=Phyra94393;rank=9 scaffold_16 . exon 319159 319307 . + . ID=Phyra94393.9;Parent=Phyra94393;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_16 . CDS 319404 319500 . + 0 ID=Phyra94393;Parent=Phyra94393;rank=10 scaffold_16 . exon 319404 319500 . + . ID=Phyra94393.10;Parent=Phyra94393;constitutive=1;ensembl_phase=2;rank=10 scaffold_16 . CDS 319577 319635 . + 0 ID=Phyra94393;Parent=Phyra94393;rank=11 scaffold_16 . exon 319577 319635 . + . ID=Phyra94393.11;Parent=Phyra94393;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_16 . CDS 319714 319774 . + 0 ID=Phyra94393;Parent=Phyra94393;rank=12 scaffold_16 . exon 319714 319774 . + . ID=Phyra94393.12;Parent=Phyra94393;constitutive=1;ensembl_phase=2;rank=12 scaffold_16 . CDS 319841 320044 . + 0 ID=Phyra94393;Parent=Phyra94393;rank=13 scaffold_16 . exon 319841 320044 . + . ID=Phyra94393.13;Parent=Phyra94393;constitutive=1;rank=13 scaffold_16 ensembl protein_coding_gene 324991 327188 . + . ID=Phyra94396;biotype=protein_coding;external_name=C_scaffold_16000053;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 324991 327188 . + . ID=Phyra94396;Parent=Phyra94396;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 324991 325639 . + 0 ID=Phyra94396;Parent=Phyra94396;rank=1 scaffold_16 . exon 324991 325639 . + . ID=Phyra94396.1;Parent=Phyra94396;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 325730 325787 . + 0 ID=Phyra94396;Parent=Phyra94396;rank=2 scaffold_16 . exon 325730 325787 . + . ID=Phyra94396.2;Parent=Phyra94396;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 325864 325934 . + 0 ID=Phyra94396;Parent=Phyra94396;rank=3 scaffold_16 . exon 325864 325934 . + . ID=Phyra94396.3;Parent=Phyra94396;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 326034 326224 . + 0 ID=Phyra94396;Parent=Phyra94396;rank=4 scaffold_16 . exon 326034 326224 . + . ID=Phyra94396.4;Parent=Phyra94396;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 326246 326349 . + 0 ID=Phyra94396;Parent=Phyra94396;rank=5 scaffold_16 . exon 326246 326349 . + . ID=Phyra94396.5;Parent=Phyra94396;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_16 . CDS 326412 326459 . + 0 ID=Phyra94396;Parent=Phyra94396;rank=6 scaffold_16 . exon 326412 326459 . + . ID=Phyra94396.6;Parent=Phyra94396;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_16 . CDS 326539 326610 . + 0 ID=Phyra94396;Parent=Phyra94396;rank=7 scaffold_16 . exon 326539 326610 . + . ID=Phyra94396.7;Parent=Phyra94396;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_16 . CDS 326814 326909 . + 0 ID=Phyra94396;Parent=Phyra94396;rank=8 scaffold_16 . exon 326814 326909 . + . ID=Phyra94396.8;Parent=Phyra94396;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_16 . CDS 327005 327188 . + 0 ID=Phyra94396;Parent=Phyra94396;rank=9 scaffold_16 . exon 327005 327188 . + . ID=Phyra94396.9;Parent=Phyra94396;constitutive=1;ensembl_phase=2;rank=9 scaffold_16 . repeat_region 330365 330404 . ? . description=trf scaffold_16 . biological_region 334201 334204 0.999 + . logic_name=eponine scaffold_16 . biological_region 334236 334240 0.999 - . logic_name=eponine scaffold_16 . biological_region 334299 334304 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 332349 334314 . - . ID=Phyra76154;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000108;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 332349 334314 . - . ID=Phyra76154;Parent=Phyra76154;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 332349 332696 . - 0 ID=Phyra76154;Parent=Phyra76154;rank=7 scaffold_16 . exon 332349 332696 . - . ID=Phyra76154.7;Parent=Phyra76154;constitutive=1;rank=7 scaffold_16 . CDS 332767 332781 . - 0 ID=Phyra76154;Parent=Phyra76154;rank=6 scaffold_16 . exon 332767 332781 . - . ID=Phyra76154.6;Parent=Phyra76154;constitutive=1;rank=6 scaffold_16 . CDS 332949 333017 . - 0 ID=Phyra76154;Parent=Phyra76154;rank=5 scaffold_16 . exon 332949 333017 . - . ID=Phyra76154.5;Parent=Phyra76154;constitutive=1;rank=5 scaffold_16 . CDS 333090 333245 . - 0 ID=Phyra76154;Parent=Phyra76154;rank=4 scaffold_16 . exon 333090 333245 . - . ID=Phyra76154.4;Parent=Phyra76154;constitutive=1;rank=4 scaffold_16 . CDS 333323 333705 . - 0 ID=Phyra76154;Parent=Phyra76154;rank=3 scaffold_16 . exon 333323 333705 . - . ID=Phyra76154.3;Parent=Phyra76154;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 333775 333884 . - 0 ID=Phyra76154;Parent=Phyra76154;rank=2 scaffold_16 . exon 333775 333884 . - . ID=Phyra76154.2;Parent=Phyra76154;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 333959 334314 . - 0 ID=Phyra76154;Parent=Phyra76154;rank=1 scaffold_16 . exon 333959 334314 . - . ID=Phyra76154.1;Parent=Phyra76154;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 327356 329589 . - . ID=Phyra94399;biotype=protein_coding;external_name=C_scaffold_16000056;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 327356 329589 . - . ID=Phyra94399;Parent=Phyra94399;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 327356 327367 . - 0 ID=Phyra94399;Parent=Phyra94399;rank=6 scaffold_16 . exon 327356 327367 . - . ID=Phyra94399.6;Parent=Phyra94399;constitutive=1;rank=6 scaffold_16 . CDS 327435 327665 . - 0 ID=Phyra94399;Parent=Phyra94399;rank=5 scaffold_16 . exon 327435 327665 . - . ID=Phyra94399.5;Parent=Phyra94399;constitutive=1;rank=5 scaffold_16 . CDS 327995 328414 . - 0 ID=Phyra94399;Parent=Phyra94399;rank=4 scaffold_16 . exon 327995 328414 . - . ID=Phyra94399.4;Parent=Phyra94399;constitutive=1;rank=4 scaffold_16 . CDS 328479 328817 . - 0 ID=Phyra94399;Parent=Phyra94399;rank=3 scaffold_16 . exon 328479 328817 . - . ID=Phyra94399.3;Parent=Phyra94399;constitutive=1;rank=3 scaffold_16 . CDS 328891 329010 . - 0 ID=Phyra94399;Parent=Phyra94399;rank=2 scaffold_16 . exon 328891 329010 . - . ID=Phyra94399.2;Parent=Phyra94399;constitutive=1;rank=2 scaffold_16 . CDS 329035 329589 . - 0 ID=Phyra94399;Parent=Phyra94399;rank=1 scaffold_16 . exon 329035 329589 . - . ID=Phyra94399.1;Parent=Phyra94399;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 330603 332125 . + . ID=Phyra94402;biotype=protein_coding;external_name=C_scaffold_16000059;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 330603 332125 . + . ID=Phyra94402;Parent=Phyra94402;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 330603 330782 . + 0 ID=Phyra94402;Parent=Phyra94402;rank=1 scaffold_16 . exon 330603 330782 . + . ID=Phyra94402.1;Parent=Phyra94402;constitutive=1;rank=1 scaffold_16 . CDS 330851 331000 . + 0 ID=Phyra94402;Parent=Phyra94402;rank=2 scaffold_16 . exon 330851 331000 . + . ID=Phyra94402.2;Parent=Phyra94402;constitutive=1;rank=2 scaffold_16 . CDS 331063 331153 . + 0 ID=Phyra94402;Parent=Phyra94402;rank=3 scaffold_16 . exon 331063 331153 . + . ID=Phyra94402.3;Parent=Phyra94402;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_16 . CDS 331227 331312 . + 0 ID=Phyra94402;Parent=Phyra94402;rank=4 scaffold_16 . exon 331227 331312 . + . ID=Phyra94402.4;Parent=Phyra94402;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 331385 331407 . + 0 ID=Phyra94402;Parent=Phyra94402;rank=5 scaffold_16 . exon 331385 331407 . + . ID=Phyra94402.5;Parent=Phyra94402;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_16 . CDS 331447 331493 . + 0 ID=Phyra94402;Parent=Phyra94402;rank=6 scaffold_16 . exon 331447 331493 . + . ID=Phyra94402.6;Parent=Phyra94402;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_16 . CDS 331571 331677 . + 0 ID=Phyra94402;Parent=Phyra94402;rank=7 scaffold_16 . exon 331571 331677 . + . ID=Phyra94402.7;Parent=Phyra94402;constitutive=1;ensembl_phase=1;rank=7 scaffold_16 . CDS 331744 331800 . + 0 ID=Phyra94402;Parent=Phyra94402;rank=8 scaffold_16 . exon 331744 331800 . + . ID=Phyra94402.8;Parent=Phyra94402;constitutive=1;rank=8 scaffold_16 . CDS 331866 331967 . + 0 ID=Phyra94402;Parent=Phyra94402;rank=9 scaffold_16 . exon 331866 331967 . + . ID=Phyra94402.9;Parent=Phyra94402;constitutive=1;rank=9 scaffold_16 . CDS 332039 332125 . + 0 ID=Phyra94402;Parent=Phyra94402;rank=10 scaffold_16 . exon 332039 332125 . + . ID=Phyra94402.10;Parent=Phyra94402;constitutive=1;rank=10 scaffold_16 . repeat_region 346380 346391 . ? . description=dust scaffold_16 ensembl protein_coding_gene 338061 338528 . - . ID=Phyra76155;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000109;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 338061 338528 . - . ID=Phyra76155;Parent=Phyra76155;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 338061 338254 . - 0 ID=Phyra76155;Parent=Phyra76155;rank=2 scaffold_16 . exon 338061 338254 . - . ID=Phyra76155.2;Parent=Phyra76155;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 338309 338528 . - 0 ID=Phyra76155;Parent=Phyra76155;rank=1 scaffold_16 . exon 338309 338528 . - . ID=Phyra76155.1;Parent=Phyra76155;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 339173 340141 . - . ID=Phyra76156;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000110;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 339173 340141 . - . ID=Phyra76156;Parent=Phyra76156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 339173 340141 . - 0 ID=Phyra76156;Parent=Phyra76156;rank=1 scaffold_16 . exon 339173 340141 . - . ID=Phyra76156.1;Parent=Phyra76156;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 340771 344214 . - . ID=Phyra76157;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000111;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 340771 344214 . - . ID=Phyra76157;Parent=Phyra76157;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 340771 340931 . - 0 ID=Phyra76157;Parent=Phyra76157;rank=3 scaffold_16 . exon 340771 340931 . - . ID=Phyra76157.3;Parent=Phyra76157;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 341004 341261 . - 0 ID=Phyra76157;Parent=Phyra76157;rank=2 scaffold_16 . exon 341004 341261 . - . ID=Phyra76157.2;Parent=Phyra76157;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 341343 344214 . - 0 ID=Phyra76157;Parent=Phyra76157;rank=1 scaffold_16 . exon 341343 344214 . - . ID=Phyra76157.1;Parent=Phyra76157;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 344465 345902 . + . ID=Phyra76158;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000112;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 344465 345902 . + . ID=Phyra76158;Parent=Phyra76158;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 344465 344533 . + 0 ID=Phyra76158;Parent=Phyra76158;rank=1 scaffold_16 . exon 344465 344533 . + . ID=Phyra76158.1;Parent=Phyra76158;constitutive=1;rank=1 scaffold_16 . CDS 344612 344727 . + 0 ID=Phyra76158;Parent=Phyra76158;rank=2 scaffold_16 . exon 344612 344727 . + . ID=Phyra76158.2;Parent=Phyra76158;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_16 . CDS 344811 344914 . + 0 ID=Phyra76158;Parent=Phyra76158;rank=3 scaffold_16 . exon 344811 344914 . + . ID=Phyra76158.3;Parent=Phyra76158;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 345166 345233 . + 0 ID=Phyra76158;Parent=Phyra76158;rank=4 scaffold_16 . exon 345166 345233 . + . ID=Phyra76158.4;Parent=Phyra76158;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 345303 345902 . + 0 ID=Phyra76158;Parent=Phyra76158;rank=5 scaffold_16 . exon 345303 345902 . + . ID=Phyra76158.5;Parent=Phyra76158;constitutive=1;rank=5 scaffold_16 ensembl protein_coding_gene 346617 348098 . + . ID=Phyra76159;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000113;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 346617 348098 . + . ID=Phyra76159;Parent=Phyra76159;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 346617 348098 . + 0 ID=Phyra76159;Parent=Phyra76159;rank=1 scaffold_16 . exon 346617 348098 . + . ID=Phyra76159.1;Parent=Phyra76159;constitutive=1;rank=1 scaffold_16 . biological_region 350481 350483 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 355032 355604 . + . ID=Phyra71395;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000015;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 355032 355604 . + . ID=Phyra71395;Parent=Phyra71395;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 355032 355505 . + 0 ID=Phyra71395;Parent=Phyra71395;rank=1 scaffold_16 . exon 355032 355505 . + . ID=Phyra71395.1;Parent=Phyra71395;constitutive=1;rank=1 scaffold_16 . CDS 355533 355604 . + 0 ID=Phyra71395;Parent=Phyra71395;rank=2 scaffold_16 . exon 355533 355604 . + . ID=Phyra71395.2;Parent=Phyra71395;constitutive=1;rank=2 scaffold_16 ensembl protein_coding_gene 348589 350076 . + . ID=Phyra76160;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000114;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 348589 350076 . + . ID=Phyra76160;Parent=Phyra76160;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 348589 350076 . + 0 ID=Phyra76160;Parent=Phyra76160;rank=1 scaffold_16 . exon 348589 350076 . + . ID=Phyra76160.1;Parent=Phyra76160;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 350416 351579 . + . ID=Phyra76161;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000115;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 350416 351579 . + . ID=Phyra76161;Parent=Phyra76161;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 350416 351579 . + 0 ID=Phyra76161;Parent=Phyra76161;rank=1 scaffold_16 . exon 350416 351579 . + . ID=Phyra76161.1;Parent=Phyra76161;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 352075 353247 . + . ID=Phyra76162;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000116;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 352075 353247 . + . ID=Phyra76162;Parent=Phyra76162;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 352075 352432 . + 0 ID=Phyra76162;Parent=Phyra76162;rank=1 scaffold_16 . exon 352075 352432 . + . ID=Phyra76162.1;Parent=Phyra76162;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 352524 352600 . + 0 ID=Phyra76162;Parent=Phyra76162;rank=2 scaffold_16 . exon 352524 352600 . + . ID=Phyra76162.2;Parent=Phyra76162;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 352672 353247 . + 0 ID=Phyra76162;Parent=Phyra76162;rank=3 scaffold_16 . exon 352672 353247 . + . ID=Phyra76162.3;Parent=Phyra76162;constitutive=1;rank=3 scaffold_16 ensembl protein_coding_gene 353433 354592 . + . ID=Phyra76163;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000117;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 353433 354592 . + . ID=Phyra76163;Parent=Phyra76163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 353433 353918 . + 0 ID=Phyra76163;Parent=Phyra76163;rank=1 scaffold_16 . exon 353433 353918 . + . ID=Phyra76163.1;Parent=Phyra76163;constitutive=1;rank=1 scaffold_16 . CDS 354029 354165 . + 0 ID=Phyra76163;Parent=Phyra76163;rank=2 scaffold_16 . exon 354029 354165 . + . ID=Phyra76163.2;Parent=Phyra76163;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_16 . CDS 354256 354592 . + 0 ID=Phyra76163;Parent=Phyra76163;rank=3 scaffold_16 . exon 354256 354592 . + . ID=Phyra76163.3;Parent=Phyra76163;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . repeat_region 363583 363608 . ? . description=trf scaffold_16 ensembl protein_coding_gene 357241 360510 . + . ID=Phyra42429;biotype=protein_coding;external_name=gwEuk.16.77.1;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 357241 360510 . + . ID=Phyra42429;Parent=Phyra42429;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 357241 360510 . + 0 ID=Phyra42429;Parent=Phyra42429;rank=1 scaffold_16 . exon 357241 360510 . + . ID=Phyra42429.1;Parent=Phyra42429;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 362831 364074 . - . ID=Phyra76166;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000120;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 362831 364074 . - . ID=Phyra76166;Parent=Phyra76166;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 362831 363250 . - 0 ID=Phyra76166;Parent=Phyra76166;rank=3 scaffold_16 . exon 362831 363250 . - . ID=Phyra76166.3;Parent=Phyra76166;constitutive=1;rank=3 scaffold_16 . CDS 363450 363478 . - 0 ID=Phyra76166;Parent=Phyra76166;rank=2 scaffold_16 . exon 363450 363478 . - . ID=Phyra76166.2;Parent=Phyra76166;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 363615 364074 . - 0 ID=Phyra76166;Parent=Phyra76166;rank=1 scaffold_16 . exon 363615 364074 . - . ID=Phyra76166.1;Parent=Phyra76166;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 365504 366326 . - . ID=Phyra76167;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000121;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 365504 366326 . - . ID=Phyra76167;Parent=Phyra76167;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 365504 365556 . - 0 ID=Phyra76167;Parent=Phyra76167;rank=5 scaffold_16 . exon 365504 365556 . - . ID=Phyra76167.5;Parent=Phyra76167;constitutive=1;ensembl_phase=1;rank=5 scaffold_16 . CDS 365583 365660 . - 0 ID=Phyra76167;Parent=Phyra76167;rank=4 scaffold_16 . exon 365583 365660 . - . ID=Phyra76167.4;Parent=Phyra76167;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 365736 365927 . - 0 ID=Phyra76167;Parent=Phyra76167;rank=3 scaffold_16 . exon 365736 365927 . - . ID=Phyra76167.3;Parent=Phyra76167;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 366011 366100 . - 0 ID=Phyra76167;Parent=Phyra76167;rank=2 scaffold_16 . exon 366011 366100 . - . ID=Phyra76167.2;Parent=Phyra76167;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 366200 366326 . - 0 ID=Phyra76167;Parent=Phyra76167;rank=1 scaffold_16 . exon 366200 366326 . - . ID=Phyra76167.1;Parent=Phyra76167;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 366494 370052 . + . ID=Phyra76168;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000122;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 366494 370052 . + . ID=Phyra76168;Parent=Phyra76168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 366494 366664 . + 0 ID=Phyra76168;Parent=Phyra76168;rank=1 scaffold_16 . exon 366494 366664 . + . ID=Phyra76168.1;Parent=Phyra76168;constitutive=1;rank=1 scaffold_16 . CDS 366729 370052 . + 0 ID=Phyra76168;Parent=Phyra76168;rank=2 scaffold_16 . exon 366729 370052 . + . ID=Phyra76168.2;Parent=Phyra76168;constitutive=1;rank=2 scaffold_16 ensembl protein_coding_gene 360854 362602 . + . ID=Phyra94404;biotype=protein_coding;external_name=C_scaffold_16000061;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 360854 362602 . + . ID=Phyra94404;Parent=Phyra94404;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 360854 362087 . + 0 ID=Phyra94404;Parent=Phyra94404;rank=1 scaffold_16 . exon 360854 362087 . + . ID=Phyra94404.1;Parent=Phyra94404;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 362151 362174 . + 0 ID=Phyra94404;Parent=Phyra94404;rank=2 scaffold_16 . exon 362151 362174 . + . ID=Phyra94404.2;Parent=Phyra94404;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 362523 362602 . + 0 ID=Phyra94404;Parent=Phyra94404;rank=3 scaffold_16 . exon 362523 362602 . + . ID=Phyra94404.3;Parent=Phyra94404;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . repeat_region 370156 370164 . ? . description=dust scaffold_16 . repeat_region 372136 372402 . ? . description=dust scaffold_16 . repeat_region 373366 373838 . ? . description=dust scaffold_16 . biological_region 373940 373943 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 370602 371639 . + . ID=Phyra71396;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000016;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 370602 371639 . + . ID=Phyra71396;Parent=Phyra71396;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 370602 371639 . + 0 ID=Phyra71396;Parent=Phyra71396;rank=1 scaffold_16 . exon 370602 371639 . + . ID=Phyra71396.1;Parent=Phyra71396;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 373982 377454 . + . ID=Phyra76170;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000124;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 373982 377454 . + . ID=Phyra76170;Parent=Phyra76170;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 373982 377015 . + 0 ID=Phyra76170;Parent=Phyra76170;rank=1 scaffold_16 . exon 373982 377015 . + . ID=Phyra76170.1;Parent=Phyra76170;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 377185 377276 . + 0 ID=Phyra76170;Parent=Phyra76170;rank=2 scaffold_16 . CDS 377395 377454 . + 0 ID=Phyra76170;Parent=Phyra76170;rank=3 scaffold_16 . repeat_region 385378 385444 . ? . description=trf scaffold_16 . exon 377185 377276 . + . ID=Phyra76170.2;Parent=Phyra76170;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . exon 377395 377454 . + . ID=Phyra76170.3;Parent=Phyra76170;constitutive=1;rank=3 scaffold_16 ensembl protein_coding_gene 378823 379402 . - . ID=Phyra76171;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000125;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 378823 379402 . - . ID=Phyra76171;Parent=Phyra76171;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 378823 378902 . - 0 ID=Phyra76171;Parent=Phyra76171;rank=4 scaffold_16 . exon 378823 378902 . - . ID=Phyra76171.4;Parent=Phyra76171;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 378981 379058 . - 0 ID=Phyra76171;Parent=Phyra76171;rank=3 scaffold_16 . exon 378981 379058 . - . ID=Phyra76171.3;Parent=Phyra76171;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 379127 379201 . - 0 ID=Phyra76171;Parent=Phyra76171;rank=2 scaffold_16 . exon 379127 379201 . - . ID=Phyra76171.2;Parent=Phyra76171;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 379267 379402 . - 0 ID=Phyra76171;Parent=Phyra76171;rank=1 scaffold_16 . exon 379267 379402 . - . ID=Phyra76171.1;Parent=Phyra76171;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 380453 381944 . - . ID=Phyra76172;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000126;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 380453 381944 . - . ID=Phyra76172;Parent=Phyra76172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 380453 380528 . - 0 ID=Phyra76172;Parent=Phyra76172;rank=9 scaffold_16 . exon 380453 380528 . - . ID=Phyra76172.9;Parent=Phyra76172;constitutive=1;ensembl_phase=2;rank=9 scaffold_16 . CDS 380604 380665 . - 0 ID=Phyra76172;Parent=Phyra76172;rank=8 scaffold_16 . exon 380604 380665 . - . ID=Phyra76172.8;Parent=Phyra76172;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_16 . CDS 380740 380837 . - 0 ID=Phyra76172;Parent=Phyra76172;rank=7 scaffold_16 . exon 380740 380837 . - . ID=Phyra76172.7;Parent=Phyra76172;constitutive=1;ensembl_phase=1;rank=7 scaffold_16 . CDS 380922 381026 . - 0 ID=Phyra76172;Parent=Phyra76172;rank=6 scaffold_16 . exon 380922 381026 . - . ID=Phyra76172.6;Parent=Phyra76172;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_16 . CDS 381121 381202 . - 0 ID=Phyra76172;Parent=Phyra76172;rank=5 scaffold_16 . exon 381121 381202 . - . ID=Phyra76172.5;Parent=Phyra76172;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_16 . CDS 381392 381514 . - 0 ID=Phyra76172;Parent=Phyra76172;rank=4 scaffold_16 . exon 381392 381514 . - . ID=Phyra76172.4;Parent=Phyra76172;constitutive=1;rank=4 scaffold_16 . CDS 381582 381689 . - 0 ID=Phyra76172;Parent=Phyra76172;rank=3 scaffold_16 . exon 381582 381689 . - . ID=Phyra76172.3;Parent=Phyra76172;constitutive=1;rank=3 scaffold_16 . CDS 381766 381860 . - 0 ID=Phyra76172;Parent=Phyra76172;rank=2 scaffold_16 . exon 381766 381860 . - . ID=Phyra76172.2;Parent=Phyra76172;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 381935 381944 . - 0 ID=Phyra76172;Parent=Phyra76172;rank=1 scaffold_16 . exon 381935 381944 . - . ID=Phyra76172.1;Parent=Phyra76172;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 382260 384262 . + . ID=Phyra76173;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000127;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 382260 384262 . + . ID=Phyra76173;Parent=Phyra76173;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 382260 382375 . + 0 ID=Phyra76173;Parent=Phyra76173;rank=1 scaffold_16 . exon 382260 382375 . + . ID=Phyra76173.1;Parent=Phyra76173;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 382452 382479 . + 0 ID=Phyra76173;Parent=Phyra76173;rank=2 scaffold_16 . exon 382452 382479 . + . ID=Phyra76173.2;Parent=Phyra76173;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 382563 382674 . + 0 ID=Phyra76173;Parent=Phyra76173;rank=3 scaffold_16 . exon 382563 382674 . + . ID=Phyra76173.3;Parent=Phyra76173;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_16 . CDS 382757 382863 . + 0 ID=Phyra76173;Parent=Phyra76173;rank=4 scaffold_16 . exon 382757 382863 . + . ID=Phyra76173.4;Parent=Phyra76173;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 382935 383099 . + 0 ID=Phyra76173;Parent=Phyra76173;rank=5 scaffold_16 . exon 382935 383099 . + . ID=Phyra76173.5;Parent=Phyra76173;constitutive=1;rank=5 scaffold_16 . CDS 383174 383445 . + 0 ID=Phyra76173;Parent=Phyra76173;rank=6 scaffold_16 . exon 383174 383445 . + . ID=Phyra76173.6;Parent=Phyra76173;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_16 . CDS 383528 383882 . + 0 ID=Phyra76173;Parent=Phyra76173;rank=7 scaffold_16 . exon 383528 383882 . + . ID=Phyra76173.7;Parent=Phyra76173;constitutive=1;ensembl_phase=2;rank=7 scaffold_16 . CDS 383956 384150 . + 0 ID=Phyra76173;Parent=Phyra76173;rank=8 scaffold_16 . exon 383956 384150 . + . ID=Phyra76173.8;Parent=Phyra76173;constitutive=1;rank=8 scaffold_16 . CDS 384215 384262 . + 0 ID=Phyra76173;Parent=Phyra76173;rank=9 scaffold_16 . exon 384215 384262 . + . ID=Phyra76173.9;Parent=Phyra76173;constitutive=1;rank=9 scaffold_16 ensembl protein_coding_gene 384528 386339 . + . ID=Phyra76174;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000128;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 384528 386339 . + . ID=Phyra76174;Parent=Phyra76174;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 384528 384734 . + 0 ID=Phyra76174;Parent=Phyra76174;rank=1 scaffold_16 . exon 384528 384734 . + . ID=Phyra76174.1;Parent=Phyra76174;constitutive=1;rank=1 scaffold_16 . CDS 384938 385040 . + 0 ID=Phyra76174;Parent=Phyra76174;rank=2 scaffold_16 . exon 384938 385040 . + . ID=Phyra76174.2;Parent=Phyra76174;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 385118 385222 . + 0 ID=Phyra76174;Parent=Phyra76174;rank=3 scaffold_16 . exon 385118 385222 . + . ID=Phyra76174.3;Parent=Phyra76174;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 385310 385770 . + 0 ID=Phyra76174;Parent=Phyra76174;rank=4 scaffold_16 . exon 385310 385770 . + . ID=Phyra76174.4;Parent=Phyra76174;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 385845 386339 . + 0 ID=Phyra76174;Parent=Phyra76174;rank=5 scaffold_16 . exon 385845 386339 . + . ID=Phyra76174.5;Parent=Phyra76174;constitutive=1;rank=5 scaffold_16 ensembl protein_coding_gene 386446 387044 . - . ID=Phyra76175;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000129;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 386446 387044 . - . ID=Phyra76175;Parent=Phyra76175;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 386446 386461 . - 0 ID=Phyra76175;Parent=Phyra76175;rank=2 scaffold_16 . exon 386446 386461 . - . ID=Phyra76175.2;Parent=Phyra76175;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 386506 387044 . - 0 ID=Phyra76175;Parent=Phyra76175;rank=1 scaffold_16 . exon 386506 387044 . - . ID=Phyra76175.1;Parent=Phyra76175;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . biological_region 387647 387652 0.999 + . logic_name=eponine scaffold_16 . biological_region 388133 388138 0.999 + . logic_name=eponine scaffold_16 . biological_region 388453 388454 0.999 - . logic_name=eponine scaffold_16 . biological_region 388473 388477 0.999 - . logic_name=eponine scaffold_16 . repeat_region 389541 389553 . ? . description=dust scaffold_16 . biological_region 396153 396155 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 387254 387856 . - . ID=Phyra71397;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000017;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 387254 387856 . - . ID=Phyra71397;Parent=Phyra71397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 387254 387856 . - 0 ID=Phyra71397;Parent=Phyra71397;rank=1 scaffold_16 . exon 387254 387856 . - . ID=Phyra71397.1;Parent=Phyra71397;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 391307 392202 . - . ID=Phyra76177;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000131;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 391307 392202 . - . ID=Phyra76177;Parent=Phyra76177;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 391307 391418 . - 0 ID=Phyra76177;Parent=Phyra76177;rank=5 scaffold_16 . exon 391307 391418 . - . ID=Phyra76177.5;Parent=Phyra76177;constitutive=1;ensembl_phase=2;rank=5 scaffold_16 . CDS 391491 391551 . - 0 ID=Phyra76177;Parent=Phyra76177;rank=4 scaffold_16 . exon 391491 391551 . - . ID=Phyra76177.4;Parent=Phyra76177;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_16 . CDS 391626 391780 . - 0 ID=Phyra76177;Parent=Phyra76177;rank=3 scaffold_16 . exon 391626 391780 . - . ID=Phyra76177.3;Parent=Phyra76177;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 391855 391975 . - 0 ID=Phyra76177;Parent=Phyra76177;rank=2 scaffold_16 . exon 391855 391975 . - . ID=Phyra76177.2;Parent=Phyra76177;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 392055 392202 . - 0 ID=Phyra76177;Parent=Phyra76177;rank=1 scaffold_16 . exon 392055 392202 . - . ID=Phyra76177.1;Parent=Phyra76177;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 394508 396317 . - . ID=Phyra76178;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000132;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 394508 396317 . - . ID=Phyra76178;Parent=Phyra76178;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 394508 394786 . - 0 ID=Phyra76178;Parent=Phyra76178;rank=2 scaffold_16 . exon 394508 394786 . - . ID=Phyra76178.2;Parent=Phyra76178;constitutive=1;rank=2 scaffold_16 . CDS 394866 396317 . - 0 ID=Phyra76178;Parent=Phyra76178;rank=1 scaffold_16 . exon 394866 396317 . - . ID=Phyra76178.1;Parent=Phyra76178;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 396611 399087 . - . ID=Phyra71398;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000018;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 396611 399087 . - . ID=Phyra71398;Parent=Phyra71398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 396611 396937 . - 0 ID=Phyra71398;Parent=Phyra71398;rank=8 scaffold_16 . exon 396611 396937 . - . ID=Phyra71398.8;Parent=Phyra71398;constitutive=1;rank=8 scaffold_16 . CDS 396993 396999 . - 0 ID=Phyra71398;Parent=Phyra71398;rank=7 scaffold_16 . exon 396993 396999 . - . ID=Phyra71398.7;Parent=Phyra71398;constitutive=1;ensembl_phase=2;rank=7 scaffold_16 . CDS 397019 397137 . - 0 ID=Phyra71398;Parent=Phyra71398;rank=6 scaffold_16 . exon 397019 397137 . - . ID=Phyra71398.6;Parent=Phyra71398;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_16 . CDS 397211 397555 . - 0 ID=Phyra71398;Parent=Phyra71398;rank=5 scaffold_16 . exon 397211 397555 . - . ID=Phyra71398.5;Parent=Phyra71398;constitutive=1;rank=5 scaffold_16 . CDS 397636 397841 . - 0 ID=Phyra71398;Parent=Phyra71398;rank=4 scaffold_16 . exon 397636 397841 . - . ID=Phyra71398.4;Parent=Phyra71398;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 397926 398043 . - 0 ID=Phyra71398;Parent=Phyra71398;rank=3 scaffold_16 . exon 397926 398043 . - . ID=Phyra71398.3;Parent=Phyra71398;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_16 . CDS 398130 398813 . - 0 ID=Phyra71398;Parent=Phyra71398;rank=2 scaffold_16 . exon 398130 398813 . - . ID=Phyra71398.2;Parent=Phyra71398;constitutive=1;rank=2 scaffold_16 . CDS 398854 399087 . - 0 ID=Phyra71398;Parent=Phyra71398;rank=1 scaffold_16 . exon 398854 399087 . - . ID=Phyra71398.1;Parent=Phyra71398;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 400641 408563 . + . ID=Phyra76180;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000134;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 400641 408563 . + . ID=Phyra76180;Parent=Phyra76180;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 400641 408563 . + 0 ID=Phyra76180;Parent=Phyra76180;rank=1 scaffold_16 . exon 400641 408563 . + . ID=Phyra76180.1;Parent=Phyra76180;constitutive=1;rank=1 scaffold_16 . repeat_region 409420 409428 . ? . description=dust scaffold_16 . repeat_region 411016 411023 . ? . description=dust scaffold_16 . biological_region 412944 412948 0.999 - . logic_name=eponine scaffold_16 . biological_region 413058 413063 0.999 + . logic_name=eponine scaffold_16 . biological_region 413068 413074 0.999 - . logic_name=eponine scaffold_16 . biological_region 413088 413089 0.999 + . logic_name=eponine scaffold_16 . biological_region 413428 413434 0.999 - . logic_name=eponine scaffold_16 . biological_region 413636 413638 0.999 + . logic_name=eponine scaffold_16 . biological_region 413696 413702 0.999 + . logic_name=eponine scaffold_16 . biological_region 413734 413738 0.999 - . logic_name=eponine scaffold_16 . biological_region 413760 413766 0.999 + . logic_name=eponine scaffold_16 . biological_region 413808 413815 0.999 - . logic_name=eponine scaffold_16 . biological_region 413836 413840 0.999 - . logic_name=eponine scaffold_16 . biological_region 414555 414558 0.999 - . logic_name=eponine scaffold_16 . biological_region 414786 414790 0.999 + . logic_name=eponine scaffold_16 . biological_region 414793 414794 0.999 - . logic_name=eponine scaffold_16 . biological_region 415176 415177 0.999 + . logic_name=eponine scaffold_16 . repeat_region 415701 415734 . ? . description=trf scaffold_16 . biological_region 415717 415719 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 409682 413277 . - . ID=Phyra76181;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000135;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 409682 413277 . - . ID=Phyra76181;Parent=Phyra76181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 409682 410051 . - 0 ID=Phyra76181;Parent=Phyra76181;rank=7 scaffold_16 . exon 409682 410051 . - . ID=Phyra76181.7;Parent=Phyra76181;constitutive=1;ensembl_phase=2;rank=7 scaffold_16 . CDS 410131 410423 . - 0 ID=Phyra76181;Parent=Phyra76181;rank=6 scaffold_16 . exon 410131 410423 . - . ID=Phyra76181.6;Parent=Phyra76181;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_16 . CDS 410498 410844 . - 0 ID=Phyra76181;Parent=Phyra76181;rank=5 scaffold_16 . exon 410498 410844 . - . ID=Phyra76181.5;Parent=Phyra76181;constitutive=1;ensembl_phase=1;rank=5 scaffold_16 . CDS 411052 411292 . - 0 ID=Phyra76181;Parent=Phyra76181;rank=4 scaffold_16 . exon 411052 411292 . - . ID=Phyra76181.4;Parent=Phyra76181;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_16 . CDS 411363 411496 . - 0 ID=Phyra76181;Parent=Phyra76181;rank=3 scaffold_16 . exon 411363 411496 . - . ID=Phyra76181.3;Parent=Phyra76181;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 411564 411624 . - 0 ID=Phyra76181;Parent=Phyra76181;rank=2 scaffold_16 . exon 411564 411624 . - . ID=Phyra76181.2;Parent=Phyra76181;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 411694 413277 . - 0 ID=Phyra76181;Parent=Phyra76181;rank=1 scaffold_16 . exon 411694 413277 . - . ID=Phyra76181.1;Parent=Phyra76181;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 414557 415826 . + . ID=Phyra76182;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000136;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 414557 415826 . + . ID=Phyra76182;Parent=Phyra76182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 414557 414680 . + 0 ID=Phyra76182;Parent=Phyra76182;rank=1 scaffold_16 . exon 414557 414680 . + . ID=Phyra76182.1;Parent=Phyra76182;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 414946 415826 . + 0 ID=Phyra76182;Parent=Phyra76182;rank=2 scaffold_16 . exon 414946 415826 . + . ID=Phyra76182.2;Parent=Phyra76182;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 ensembl protein_coding_gene 416272 416988 . - . ID=Phyra76183;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000137;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 416272 416988 . - . ID=Phyra76183;Parent=Phyra76183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 416272 416988 . - 0 ID=Phyra76183;Parent=Phyra76183;rank=1 scaffold_16 . exon 416272 416988 . - . ID=Phyra76183.1;Parent=Phyra76183;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 419471 420235 . - . ID=Phyra76185;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000139;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 419471 420235 . - . ID=Phyra76185;Parent=Phyra76185;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 419471 420235 . - 0 ID=Phyra76185;Parent=Phyra76185;rank=1 scaffold_16 . exon 419471 420235 . - . ID=Phyra76185.1;Parent=Phyra76185;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 421860 422779 . + . ID=Phyra76186;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000140;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 421860 422779 . + . ID=Phyra76186;Parent=Phyra76186;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 421860 422035 . + 0 ID=Phyra76186;Parent=Phyra76186;rank=1 scaffold_16 . exon 421860 422035 . + . ID=Phyra76186.1;Parent=Phyra76186;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 422060 422102 . + 0 ID=Phyra76186;Parent=Phyra76186;rank=2 scaffold_16 . exon 422060 422102 . + . ID=Phyra76186.2;Parent=Phyra76186;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 422177 422779 . + 0 ID=Phyra76186;Parent=Phyra76186;rank=3 scaffold_16 . exon 422177 422779 . + . ID=Phyra76186.3;Parent=Phyra76186;constitutive=1;rank=3 scaffold_16 ensembl protein_coding_gene 422912 424367 . + . ID=Phyra76187;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000141;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 422912 424367 . + . ID=Phyra76187;Parent=Phyra76187;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 422912 423661 . + 0 ID=Phyra76187;Parent=Phyra76187;rank=1 scaffold_16 . exon 422912 423661 . + . ID=Phyra76187.1;Parent=Phyra76187;constitutive=1;rank=1 scaffold_16 . CDS 423726 424367 . + 0 ID=Phyra76187;Parent=Phyra76187;rank=2 scaffold_16 . exon 423726 424367 . + . ID=Phyra76187.2;Parent=Phyra76187;constitutive=1;rank=2 scaffold_16 ensembl protein_coding_gene 417808 419088 . + . ID=Phyra94406;biotype=protein_coding;external_name=C_scaffold_16000063;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 417808 419088 . + . ID=Phyra94406;Parent=Phyra94406;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 417808 418014 . + 0 ID=Phyra94406;Parent=Phyra94406;rank=1 scaffold_16 . exon 417808 418014 . + . ID=Phyra94406.1;Parent=Phyra94406;constitutive=1;rank=1 scaffold_16 . CDS 418158 418238 . + 0 ID=Phyra94406;Parent=Phyra94406;rank=2 scaffold_16 . exon 418158 418238 . + . ID=Phyra94406.2;Parent=Phyra94406;constitutive=1;rank=2 scaffold_16 . CDS 418307 418386 . + 0 ID=Phyra94406;Parent=Phyra94406;rank=3 scaffold_16 . exon 418307 418386 . + . ID=Phyra94406.3;Parent=Phyra94406;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_16 . CDS 418472 418648 . + 0 ID=Phyra94406;Parent=Phyra94406;rank=4 scaffold_16 . exon 418472 418648 . + . ID=Phyra94406.4;Parent=Phyra94406;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_16 . CDS 418758 418863 . + 0 ID=Phyra94406;Parent=Phyra94406;rank=5 scaffold_16 . exon 418758 418863 . + . ID=Phyra94406.5;Parent=Phyra94406;constitutive=1;ensembl_phase=2;rank=5 scaffold_16 . CDS 418966 419088 . + 0 ID=Phyra94406;Parent=Phyra94406;rank=6 scaffold_16 . exon 418966 419088 . + . ID=Phyra94406.6;Parent=Phyra94406;constitutive=1;rank=6 scaffold_16 ensembl protein_coding_gene 420388 420911 . + . ID=Phyra94407;biotype=protein_coding;external_name=C_scaffold_16000064;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 420388 420911 . + . ID=Phyra94407;Parent=Phyra94407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 420388 420480 . + 0 ID=Phyra94407;Parent=Phyra94407;rank=1 scaffold_16 . exon 420388 420480 . + . ID=Phyra94407.1;Parent=Phyra94407;constitutive=1;rank=1 scaffold_16 . CDS 420600 420911 . + 0 ID=Phyra94407;Parent=Phyra94407;rank=2 scaffold_16 . exon 420600 420911 . + . ID=Phyra94407.2;Parent=Phyra94407;constitutive=1;rank=2 scaffold_16 ensembl protein_coding_gene 428522 431328 . + . ID=Phyra42448;biotype=protein_coding;external_name=gwEuk.16.96.1;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 428522 431328 . + . ID=Phyra42448;Parent=Phyra42448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 428522 429403 . + 0 ID=Phyra42448;Parent=Phyra42448;rank=1 scaffold_16 . exon 428522 429403 . + . ID=Phyra42448.1;Parent=Phyra42448;constitutive=1;rank=1 scaffold_16 . CDS 429469 430200 . + 0 ID=Phyra42448;Parent=Phyra42448;rank=2 scaffold_16 . exon 429469 430200 . + . ID=Phyra42448.2;Parent=Phyra42448;constitutive=1;rank=2 scaffold_16 . CDS 430265 430381 . + 0 ID=Phyra42448;Parent=Phyra42448;rank=3 scaffold_16 . exon 430265 430381 . + . ID=Phyra42448.3;Parent=Phyra42448;constitutive=1;rank=3 scaffold_16 . CDS 430443 431074 . + 0 ID=Phyra42448;Parent=Phyra42448;rank=4 scaffold_16 . exon 430443 431074 . + . ID=Phyra42448.4;Parent=Phyra42448;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_16 . CDS 431154 431328 . + 0 ID=Phyra42448;Parent=Phyra42448;rank=5 scaffold_16 . exon 431154 431328 . + . ID=Phyra42448.5;Parent=Phyra42448;constitutive=1;ensembl_phase=2;rank=5 scaffold_16 ensembl protein_coding_gene 431530 433609 . - . ID=Phyra76189;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000143;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 431530 433609 . - . ID=Phyra76189;Parent=Phyra76189;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 431530 431816 . - 0 ID=Phyra76189;Parent=Phyra76189;rank=4 scaffold_16 . exon 431530 431816 . - . ID=Phyra76189.4;Parent=Phyra76189;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 432003 432260 . - 0 ID=Phyra76189;Parent=Phyra76189;rank=3 scaffold_16 . exon 432003 432260 . - . ID=Phyra76189.3;Parent=Phyra76189;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 432327 433138 . - 0 ID=Phyra76189;Parent=Phyra76189;rank=2 scaffold_16 . exon 432327 433138 . - . ID=Phyra76189.2;Parent=Phyra76189;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 433209 433609 . - 0 ID=Phyra76189;Parent=Phyra76189;rank=1 scaffold_16 . exon 433209 433609 . - . ID=Phyra76189.1;Parent=Phyra76189;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 433821 435740 . - . ID=Phyra76190;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000144;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 433821 435740 . - . ID=Phyra76190;Parent=Phyra76190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 433821 435740 . - 0 ID=Phyra76190;Parent=Phyra76190;rank=1 scaffold_16 . exon 433821 435740 . - . ID=Phyra76190.1;Parent=Phyra76190;constitutive=1;rank=1 scaffold_16 . biological_region 436471 436474 0.999 - . logic_name=eponine scaffold_16 . biological_region 436512 436516 0.999 - . logic_name=eponine scaffold_16 . biological_region 436530 436532 0.999 + . logic_name=eponine scaffold_16 . biological_region 436670 436674 0.999 - . logic_name=eponine scaffold_16 . biological_region 436760 436764 0.999 - . logic_name=eponine scaffold_16 . biological_region 436853 436854 0.999 - . logic_name=eponine scaffold_16 . biological_region 445051 445055 0.999 + . logic_name=eponine scaffold_16 . biological_region 445161 445166 0.999 + . logic_name=eponine scaffold_16 . biological_region 445778 445779 0.999 - . logic_name=eponine scaffold_16 . biological_region 446035 446038 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 441269 443205 . - . ID=Phyra76192;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000146;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 441269 443205 . - . ID=Phyra76192;Parent=Phyra76192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 441269 441346 . - 0 ID=Phyra76192;Parent=Phyra76192;rank=10 scaffold_16 . exon 441269 441346 . - . ID=Phyra76192.10;Parent=Phyra76192;constitutive=1;rank=10 scaffold_16 . CDS 441417 441561 . - 0 ID=Phyra76192;Parent=Phyra76192;rank=9 scaffold_16 . exon 441417 441561 . - . ID=Phyra76192.9;Parent=Phyra76192;constitutive=1;ensembl_phase=2;rank=9 scaffold_16 . CDS 441629 441693 . - 0 ID=Phyra76192;Parent=Phyra76192;rank=8 scaffold_16 . exon 441629 441693 . - . ID=Phyra76192.8;Parent=Phyra76192;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_16 . CDS 441770 441875 . - 0 ID=Phyra76192;Parent=Phyra76192;rank=7 scaffold_16 . exon 441770 441875 . - . ID=Phyra76192.7;Parent=Phyra76192;constitutive=1;ensembl_phase=2;rank=7 scaffold_16 . CDS 441939 442074 . - 0 ID=Phyra76192;Parent=Phyra76192;rank=6 scaffold_16 . exon 441939 442074 . - . ID=Phyra76192.6;Parent=Phyra76192;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_16 . CDS 442265 442292 . - 0 ID=Phyra76192;Parent=Phyra76192;rank=5 scaffold_16 . exon 442265 442292 . - . ID=Phyra76192.5;Parent=Phyra76192;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_16 . CDS 442474 442602 . - 0 ID=Phyra76192;Parent=Phyra76192;rank=4 scaffold_16 . exon 442474 442602 . - . ID=Phyra76192.4;Parent=Phyra76192;constitutive=1;rank=4 scaffold_16 . CDS 442699 442856 . - 0 ID=Phyra76192;Parent=Phyra76192;rank=3 scaffold_16 . exon 442699 442856 . - . ID=Phyra76192.3;Parent=Phyra76192;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 442952 443042 . - 0 ID=Phyra76192;Parent=Phyra76192;rank=2 scaffold_16 . exon 442952 443042 . - . ID=Phyra76192.2;Parent=Phyra76192;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 443104 443205 . - 0 ID=Phyra76192;Parent=Phyra76192;rank=1 scaffold_16 . exon 443104 443205 . - . ID=Phyra76192.1;Parent=Phyra76192;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 443365 445341 . - . ID=Phyra76193;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000147;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 443365 445341 . - . ID=Phyra76193;Parent=Phyra76193;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 443365 445341 . - 0 ID=Phyra76193;Parent=Phyra76193;rank=1 scaffold_16 . exon 443365 445341 . - . ID=Phyra76193.1;Parent=Phyra76193;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 445473 446222 . - . ID=Phyra76194;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000148;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 445473 446222 . - . ID=Phyra76194;Parent=Phyra76194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 445473 446222 . - 0 ID=Phyra76194;Parent=Phyra76194;rank=1 scaffold_16 . exon 445473 446222 . - . ID=Phyra76194.1;Parent=Phyra76194;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 436436 441175 . + . ID=Phyra94409;biotype=protein_coding;external_name=C_scaffold_16000066;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 436436 441175 . + . ID=Phyra94409;Parent=Phyra94409;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 436436 436750 . + 0 ID=Phyra94409;Parent=Phyra94409;rank=1 scaffold_16 . exon 436436 436750 . + . ID=Phyra94409.1;Parent=Phyra94409;constitutive=1;rank=1 scaffold_16 . CDS 436808 439367 . + 0 ID=Phyra94409;Parent=Phyra94409;rank=2 scaffold_16 . exon 436808 439367 . + . ID=Phyra94409.2;Parent=Phyra94409;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 439468 439598 . + 0 ID=Phyra94409;Parent=Phyra94409;rank=3 scaffold_16 . exon 439468 439598 . + . ID=Phyra94409.3;Parent=Phyra94409;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 439726 439771 . + 0 ID=Phyra94409;Parent=Phyra94409;rank=4 scaffold_16 . exon 439726 439771 . + . ID=Phyra94409.4;Parent=Phyra94409;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_16 . CDS 439875 439931 . + 0 ID=Phyra94409;Parent=Phyra94409;rank=5 scaffold_16 . exon 439875 439931 . + . ID=Phyra94409.5;Parent=Phyra94409;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_16 . CDS 439998 440074 . + 0 ID=Phyra94409;Parent=Phyra94409;rank=6 scaffold_16 . exon 439998 440074 . + . ID=Phyra94409.6;Parent=Phyra94409;constitutive=1;ensembl_phase=1;rank=6 scaffold_16 . CDS 440155 440235 . + 0 ID=Phyra94409;Parent=Phyra94409;rank=7 scaffold_16 . exon 440155 440235 . + . ID=Phyra94409.7;Parent=Phyra94409;constitutive=1;rank=7 scaffold_16 . CDS 440484 440612 . + 0 ID=Phyra94409;Parent=Phyra94409;rank=8 scaffold_16 . exon 440484 440612 . + . ID=Phyra94409.8;Parent=Phyra94409;constitutive=1;rank=8 scaffold_16 . CDS 440680 440826 . + 0 ID=Phyra94409;Parent=Phyra94409;rank=9 scaffold_16 . exon 440680 440826 . + . ID=Phyra94409.9;Parent=Phyra94409;constitutive=1;rank=9 scaffold_16 . CDS 440906 441175 . + 0 ID=Phyra94409;Parent=Phyra94409;rank=10 scaffold_16 . exon 440906 441175 . + . ID=Phyra94409.10;Parent=Phyra94409;constitutive=1;rank=10 scaffold_16 . repeat_region 448155 448192 . ? . description=trf scaffold_16 . repeat_region 454846 454905 . ? . description=trf scaffold_16 ensembl protein_coding_gene 447161 448079 . - . ID=Phyra76195;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000149;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 447161 448079 . - . ID=Phyra76195;Parent=Phyra76195;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 447161 447766 . - 0 ID=Phyra76195;Parent=Phyra76195;rank=2 scaffold_16 . exon 447161 447766 . - . ID=Phyra76195.2;Parent=Phyra76195;constitutive=1;rank=2 scaffold_16 . CDS 447837 448079 . - 0 ID=Phyra76195;Parent=Phyra76195;rank=1 scaffold_16 . exon 447837 448079 . - . ID=Phyra76195.1;Parent=Phyra76195;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 448233 449693 . - . ID=Phyra76196;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000150;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 448233 449693 . - . ID=Phyra76196;Parent=Phyra76196;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 448233 449693 . - 0 ID=Phyra76196;Parent=Phyra76196;rank=1 scaffold_16 . exon 448233 449693 . - . ID=Phyra76196.1;Parent=Phyra76196;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 449853 454601 . - . ID=Phyra76197;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000151;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 449853 454601 . - . ID=Phyra76197;Parent=Phyra76197;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 449853 453879 . - 0 ID=Phyra76197;Parent=Phyra76197;rank=4 scaffold_16 . exon 449853 453879 . - . ID=Phyra76197.4;Parent=Phyra76197;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . CDS 453962 454220 . - 0 ID=Phyra76197;Parent=Phyra76197;rank=3 scaffold_16 . exon 453962 454220 . - . ID=Phyra76197.3;Parent=Phyra76197;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_16 . CDS 454288 454390 . - 0 ID=Phyra76197;Parent=Phyra76197;rank=2 scaffold_16 . exon 454288 454390 . - . ID=Phyra76197.2;Parent=Phyra76197;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 454449 454601 . - 0 ID=Phyra76197;Parent=Phyra76197;rank=1 scaffold_16 . exon 454449 454601 . - . ID=Phyra76197.1;Parent=Phyra76197;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 454818 456539 . + . ID=Phyra76198;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000152;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 454818 456539 . + . ID=Phyra76198;Parent=Phyra76198;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 454818 456539 . + 0 ID=Phyra76198;Parent=Phyra76198;rank=1 scaffold_16 . exon 454818 456539 . + . ID=Phyra76198.1;Parent=Phyra76198;constitutive=1;rank=1 scaffold_16 . biological_region 458513 458515 0.999 - . logic_name=eponine scaffold_16 . repeat_region 459760 459772 . ? . description=dust scaffold_16 . biological_region 460632 460632 0.999 - . logic_name=eponine scaffold_16 . biological_region 463205 463206 0.999 - . logic_name=eponine scaffold_16 . biological_region 463231 463232 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 463363 464799 . - . ID=Phyra42464;biotype=protein_coding;external_name=gwEuk.16.112.1;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 463363 464799 . - . ID=Phyra42464;Parent=Phyra42464;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 463363 464799 . - 0 ID=Phyra42464;Parent=Phyra42464;rank=1 scaffold_16 . exon 463363 464799 . - . ID=Phyra42464.1;Parent=Phyra42464;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 459891 460640 . + . ID=Phyra76200;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000154;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 459891 460640 . + . ID=Phyra76200;Parent=Phyra76200;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 459891 460640 . + 0 ID=Phyra76200;Parent=Phyra76200;rank=1 scaffold_16 . exon 459891 460640 . + . ID=Phyra76200.1;Parent=Phyra76200;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 460850 462810 . + . ID=Phyra76201;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000155;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 460850 462810 . + . ID=Phyra76201;Parent=Phyra76201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 460850 461432 . + 0 ID=Phyra76201;Parent=Phyra76201;rank=1 scaffold_16 . exon 460850 461432 . + . ID=Phyra76201.1;Parent=Phyra76201;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 461564 462810 . + 0 ID=Phyra76201;Parent=Phyra76201;rank=2 scaffold_16 . exon 461564 462810 . + . ID=Phyra76201.2;Parent=Phyra76201;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 ensembl protein_coding_gene 465091 465969 . + . ID=Phyra76203;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000157;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 465091 465969 . + . ID=Phyra76203;Parent=Phyra76203;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 465091 465565 . + 0 ID=Phyra76203;Parent=Phyra76203;rank=1 scaffold_16 . exon 465091 465565 . + . ID=Phyra76203.1;Parent=Phyra76203;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 465634 465741 . + 0 ID=Phyra76203;Parent=Phyra76203;rank=2 scaffold_16 . exon 465634 465741 . + . ID=Phyra76203.2;Parent=Phyra76203;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 465827 465969 . + 0 ID=Phyra76203;Parent=Phyra76203;rank=3 scaffold_16 . exon 465827 465969 . + . ID=Phyra76203.3;Parent=Phyra76203;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 ensembl protein_coding_gene 456869 458762 . - . ID=Phyra94413;biotype=protein_coding;external_name=C_scaffold_16000070;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 456869 458762 . - . ID=Phyra94413;Parent=Phyra94413;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 456869 456925 . - 0 ID=Phyra94413;Parent=Phyra94413;rank=8 scaffold_16 . exon 456869 456925 . - . ID=Phyra94413.8;Parent=Phyra94413;constitutive=1;rank=8 scaffold_16 . CDS 456953 456997 . - 0 ID=Phyra94413;Parent=Phyra94413;rank=7 scaffold_16 . exon 456953 456997 . - . ID=Phyra94413.7;Parent=Phyra94413;constitutive=1;rank=7 scaffold_16 . CDS 457082 457186 . - 0 ID=Phyra94413;Parent=Phyra94413;rank=6 scaffold_16 . exon 457082 457186 . - . ID=Phyra94413.6;Parent=Phyra94413;constitutive=1;rank=6 scaffold_16 . CDS 457540 457683 . - 0 ID=Phyra94413;Parent=Phyra94413;rank=5 scaffold_16 . exon 457540 457683 . - . ID=Phyra94413.5;Parent=Phyra94413;constitutive=1;rank=5 scaffold_16 . CDS 457902 458298 . - 0 ID=Phyra94413;Parent=Phyra94413;rank=4 scaffold_16 . exon 457902 458298 . - . ID=Phyra94413.4;Parent=Phyra94413;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . CDS 458374 458474 . - 0 ID=Phyra94413;Parent=Phyra94413;rank=3 scaffold_16 . exon 458374 458474 . - . ID=Phyra94413.3;Parent=Phyra94413;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_16 . CDS 458561 458670 . - 0 ID=Phyra94413;Parent=Phyra94413;rank=2 scaffold_16 . exon 458561 458670 . - . ID=Phyra94413.2;Parent=Phyra94413;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 458735 458762 . - 0 ID=Phyra94413;Parent=Phyra94413;rank=1 scaffold_16 . exon 458735 458762 . - . ID=Phyra94413.1;Parent=Phyra94413;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 469284 470852 . + . ID=Phyra71399;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000019;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 469284 470852 . + . ID=Phyra71399;Parent=Phyra71399;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 469284 470852 . + 0 ID=Phyra71399;Parent=Phyra71399;rank=1 scaffold_16 . exon 469284 470852 . + . ID=Phyra71399.1;Parent=Phyra71399;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 466194 466985 . - . ID=Phyra76204;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000158;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 466194 466985 . - . ID=Phyra76204;Parent=Phyra76204;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 466194 466985 . - 0 ID=Phyra76204;Parent=Phyra76204;rank=1 scaffold_16 . exon 466194 466985 . - . ID=Phyra76204.1;Parent=Phyra76204;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 467253 469025 . - . ID=Phyra76205;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000159;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 467253 469025 . - . ID=Phyra76205;Parent=Phyra76205;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 467253 469025 . - 0 ID=Phyra76205;Parent=Phyra76205;rank=1 scaffold_16 . exon 467253 469025 . - . ID=Phyra76205.1;Parent=Phyra76205;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 471083 471995 . - . ID=Phyra76207;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000161;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 471083 471995 . - . ID=Phyra76207;Parent=Phyra76207;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 471083 471479 . - 0 ID=Phyra76207;Parent=Phyra76207;rank=2 scaffold_16 . exon 471083 471479 . - . ID=Phyra76207.2;Parent=Phyra76207;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 471727 471995 . - 0 ID=Phyra76207;Parent=Phyra76207;rank=1 scaffold_16 . exon 471727 471995 . - . ID=Phyra76207.1;Parent=Phyra76207;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 472601 473527 . - . ID=Phyra76208;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000162;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 472601 473527 . - . ID=Phyra76208;Parent=Phyra76208;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 472601 473527 . - 0 ID=Phyra76208;Parent=Phyra76208;rank=1 scaffold_16 . exon 472601 473527 . - . ID=Phyra76208.1;Parent=Phyra76208;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 473852 475027 . - . ID=Phyra76209;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000163;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 473852 475027 . - . ID=Phyra76209;Parent=Phyra76209;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 473852 475027 . - 0 ID=Phyra76209;Parent=Phyra76209;rank=1 scaffold_16 . exon 473852 475027 . - . ID=Phyra76209.1;Parent=Phyra76209;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 475606 478042 . - . ID=Phyra76210;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000164;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 475606 478042 . - . ID=Phyra76210;Parent=Phyra76210;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 475606 475783 . - 0 ID=Phyra76210;Parent=Phyra76210;rank=5 scaffold_16 . exon 475606 475783 . - . ID=Phyra76210.5;Parent=Phyra76210;constitutive=1;ensembl_phase=2;rank=5 scaffold_16 . CDS 475816 476054 . - 0 ID=Phyra76210;Parent=Phyra76210;rank=4 scaffold_16 . exon 475816 476054 . - . ID=Phyra76210.4;Parent=Phyra76210;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_16 . CDS 476124 476778 . - 0 ID=Phyra76210;Parent=Phyra76210;rank=3 scaffold_16 . CDS 476842 477194 . - 0 ID=Phyra76210;Parent=Phyra76210;rank=2 scaffold_16 . CDS 477275 478042 . - 0 ID=Phyra76210;Parent=Phyra76210;rank=1 scaffold_16 . biological_region 479967 479968 0.999 - . logic_name=eponine scaffold_16 . biological_region 480051 480057 0.999 + . logic_name=eponine scaffold_16 . exon 476124 476778 . - . ID=Phyra76210.3;Parent=Phyra76210;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . exon 476842 477194 . - . ID=Phyra76210.2;Parent=Phyra76210;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_16 . exon 477275 478042 . - . ID=Phyra76210.1;Parent=Phyra76210;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 478880 479950 . + . ID=Phyra76211;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000165;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 478880 479950 . + . ID=Phyra76211;Parent=Phyra76211;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 478880 479950 . + 0 ID=Phyra76211;Parent=Phyra76211;rank=1 scaffold_16 . exon 478880 479950 . + . ID=Phyra76211.1;Parent=Phyra76211;constitutive=1;rank=1 scaffold_16 . repeat_region 495160 495247 . ? . description=dust scaffold_16 . repeat_region 495204 495237 . ? . description=trf scaffold_16 . repeat_region 495204 495240 . ? . description=trf scaffold_16 . repeat_region 495212 495247 . ? . description=trf scaffold_16 ensembl protein_coding_gene 493999 495060 . - . ID=Phyra42481;biotype=protein_coding;external_name=gwEuk.16.129.1;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 493999 495060 . - . ID=Phyra42481;Parent=Phyra42481;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 493999 494139 . - 0 ID=Phyra42481;Parent=Phyra42481;rank=4 scaffold_16 . exon 493999 494139 . - . ID=Phyra42481.4;Parent=Phyra42481;constitutive=1;rank=4 scaffold_16 . CDS 494216 494662 . - 0 ID=Phyra42481;Parent=Phyra42481;rank=3 scaffold_16 . exon 494216 494662 . - . ID=Phyra42481.3;Parent=Phyra42481;constitutive=1;rank=3 scaffold_16 . CDS 494705 494775 . - 0 ID=Phyra42481;Parent=Phyra42481;rank=2 scaffold_16 . exon 494705 494775 . - . ID=Phyra42481.2;Parent=Phyra42481;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 494850 495060 . - 0 ID=Phyra42481;Parent=Phyra42481;rank=1 scaffold_16 . exon 494850 495060 . - . ID=Phyra42481.1;Parent=Phyra42481;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 490625 491980 . + . ID=Phyra71400;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000020;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 490625 491980 . + . ID=Phyra71400;Parent=Phyra71400;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 490625 490964 . + 0 ID=Phyra71400;Parent=Phyra71400;rank=1 scaffold_16 . exon 490625 490964 . + . ID=Phyra71400.1;Parent=Phyra71400;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 491337 491515 . + 0 ID=Phyra71400;Parent=Phyra71400;rank=2 scaffold_16 . exon 491337 491515 . + . ID=Phyra71400.2;Parent=Phyra71400;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 491828 491980 . + 0 ID=Phyra71400;Parent=Phyra71400;rank=3 scaffold_16 . exon 491828 491980 . + . ID=Phyra71400.3;Parent=Phyra71400;constitutive=1;rank=3 scaffold_16 ensembl protein_coding_gene 492521 493565 . - . ID=Phyra71401;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000021;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 492521 493565 . - . ID=Phyra71401;Parent=Phyra71401;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 492521 492562 . - 0 ID=Phyra71401;Parent=Phyra71401;rank=3 scaffold_16 . exon 492521 492562 . - . ID=Phyra71401.3;Parent=Phyra71401;constitutive=1;rank=3 scaffold_16 . CDS 492591 493177 . - 0 ID=Phyra71401;Parent=Phyra71401;rank=2 scaffold_16 . exon 492591 493177 . - . ID=Phyra71401.2;Parent=Phyra71401;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 493274 493565 . - 0 ID=Phyra71401;Parent=Phyra71401;rank=1 scaffold_16 . exon 493274 493565 . - . ID=Phyra71401.1;Parent=Phyra71401;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 486608 490210 . - . ID=Phyra76212;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000166;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 486608 490210 . - . ID=Phyra76212;Parent=Phyra76212;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 486608 490210 . - 0 ID=Phyra76212;Parent=Phyra76212;rank=1 scaffold_16 . exon 486608 490210 . - . ID=Phyra76212.1;Parent=Phyra76212;constitutive=1;rank=1 scaffold_16 . biological_region 504584 504593 0.999 + . logic_name=eponine scaffold_16 . biological_region 504611 504617 0.999 + . logic_name=eponine scaffold_16 . biological_region 504658 504661 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 496606 498771 . - . ID=Phyra42484;biotype=protein_coding;external_name=gwEuk.16.132.1;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 496606 498771 . - . ID=Phyra42484;Parent=Phyra42484;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 496606 498771 . - 0 ID=Phyra42484;Parent=Phyra42484;rank=1 scaffold_16 . exon 496606 498771 . - . ID=Phyra42484.1;Parent=Phyra42484;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 500460 501779 . + . ID=Phyra76217;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000171;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 500460 501779 . + . ID=Phyra76217;Parent=Phyra76217;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 500460 500704 . + 0 ID=Phyra76217;Parent=Phyra76217;rank=1 scaffold_16 . exon 500460 500704 . + . ID=Phyra76217.1;Parent=Phyra76217;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 500767 500904 . + 0 ID=Phyra76217;Parent=Phyra76217;rank=2 scaffold_16 . exon 500767 500904 . + . ID=Phyra76217.2;Parent=Phyra76217;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . CDS 500942 500997 . + 0 ID=Phyra76217;Parent=Phyra76217;rank=3 scaffold_16 . exon 500942 500997 . + . ID=Phyra76217.3;Parent=Phyra76217;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 501044 501700 . + 0 ID=Phyra76217;Parent=Phyra76217;rank=4 scaffold_16 . exon 501044 501700 . + . ID=Phyra76217.4;Parent=Phyra76217;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 501736 501779 . + 0 ID=Phyra76217;Parent=Phyra76217;rank=5 scaffold_16 . exon 501736 501779 . + . ID=Phyra76217.5;Parent=Phyra76217;constitutive=1;ensembl_phase=1;rank=5 scaffold_16 ensembl protein_coding_gene 502314 508875 . - . ID=Phyra94417;biotype=protein_coding;external_name=C_scaffold_16000074;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 502314 508875 . - . ID=Phyra94417;Parent=Phyra94417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 502314 503119 . - 0 ID=Phyra94417;Parent=Phyra94417;rank=7 scaffold_16 . exon 502314 503119 . - . ID=Phyra94417.7;Parent=Phyra94417;constitutive=1;ensembl_phase=1;rank=7 scaffold_16 . CDS 503194 503821 . - 0 ID=Phyra94417;Parent=Phyra94417;rank=6 scaffold_16 . exon 503194 503821 . - . ID=Phyra94417.6;Parent=Phyra94417;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_16 . CDS 503906 504017 . - 0 ID=Phyra94417;Parent=Phyra94417;rank=5 scaffold_16 . exon 503906 504017 . - . ID=Phyra94417.5;Parent=Phyra94417;constitutive=1;ensembl_phase=2;rank=5 scaffold_16 . CDS 504383 504747 . - 0 ID=Phyra94417;Parent=Phyra94417;rank=4 scaffold_16 . exon 504383 504747 . - . ID=Phyra94417.4;Parent=Phyra94417;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_16 . CDS 504793 507581 . - 0 ID=Phyra94417;Parent=Phyra94417;rank=3 scaffold_16 . exon 504793 507581 . - . ID=Phyra94417.3;Parent=Phyra94417;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 507723 508207 . - 0 ID=Phyra94417;Parent=Phyra94417;rank=2 scaffold_16 . CDS 508256 508875 . - 0 ID=Phyra94417;Parent=Phyra94417;rank=1 scaffold_16 ensembl protein_coding_gene 510055 511256 . + . ID=Phyra76220;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000174;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 510055 511256 . + . ID=Phyra76220;Parent=Phyra76220;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 510055 510207 . + 0 ID=Phyra76220;Parent=Phyra76220;rank=1 scaffold_16 . exon 510055 510207 . + . ID=Phyra76220.1;Parent=Phyra76220;constitutive=1;rank=1 scaffold_16 . CDS 510279 511256 . + 0 ID=Phyra76220;Parent=Phyra76220;rank=2 scaffold_16 . exon 510279 511256 . + . ID=Phyra76220.2;Parent=Phyra76220;constitutive=1;rank=2 scaffold_16 . exon 507723 508207 . - . ID=Phyra94417.2;Parent=Phyra94417;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_16 . exon 508256 508875 . - . ID=Phyra94417.1;Parent=Phyra94417;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . biological_region 523709 523713 0.999 - . logic_name=eponine scaffold_16 . biological_region 523728 523729 0.999 + . logic_name=eponine scaffold_16 . biological_region 523803 523807 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 521777 522766 . + . ID=Phyra76221;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000175;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 521777 522766 . + . ID=Phyra76221;Parent=Phyra76221;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 521777 522766 . + 0 ID=Phyra76221;Parent=Phyra76221;rank=1 scaffold_16 . exon 521777 522766 . + . ID=Phyra76221.1;Parent=Phyra76221;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 523466 524800 . + . ID=Phyra76222;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000176;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 523466 524800 . + . ID=Phyra76222;Parent=Phyra76222;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 523466 524514 . + 0 ID=Phyra76222;Parent=Phyra76222;rank=1 scaffold_16 . exon 523466 524514 . + . ID=Phyra76222.1;Parent=Phyra76222;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 524599 524800 . + 0 ID=Phyra76222;Parent=Phyra76222;rank=2 scaffold_16 . exon 524599 524800 . + . ID=Phyra76222.2;Parent=Phyra76222;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 ensembl protein_coding_gene 525420 527562 . - . ID=Phyra76223;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000177;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 525420 527562 . - . ID=Phyra76223;Parent=Phyra76223;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 525420 525460 . - 0 ID=Phyra76223;Parent=Phyra76223;rank=7 scaffold_16 . exon 525420 525460 . - . ID=Phyra76223.7;Parent=Phyra76223;constitutive=1;ensembl_phase=1;rank=7 scaffold_16 . CDS 525501 525849 . - 0 ID=Phyra76223;Parent=Phyra76223;rank=6 scaffold_16 . CDS 526153 526195 . - 0 ID=Phyra76223;Parent=Phyra76223;rank=5 scaffold_16 . CDS 526289 526751 . - 0 ID=Phyra76223;Parent=Phyra76223;rank=4 scaffold_16 . CDS 527124 527182 . - 0 ID=Phyra76223;Parent=Phyra76223;rank=3 scaffold_16 . CDS 527266 527327 . - 0 ID=Phyra76223;Parent=Phyra76223;rank=2 scaffold_16 . CDS 527389 527562 . - 0 ID=Phyra76223;Parent=Phyra76223;rank=1 scaffold_16 . repeat_region 530305 530312 . ? . description=dust scaffold_16 . exon 525501 525849 . - . ID=Phyra76223.6;Parent=Phyra76223;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_16 . exon 526153 526195 . - . ID=Phyra76223.5;Parent=Phyra76223;constitutive=1;ensembl_phase=2;rank=5 scaffold_16 . exon 526289 526751 . - . ID=Phyra76223.4;Parent=Phyra76223;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_16 . exon 527124 527182 . - . ID=Phyra76223.3;Parent=Phyra76223;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_16 . exon 527266 527327 . - . ID=Phyra76223.2;Parent=Phyra76223;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_16 . exon 527389 527562 . - . ID=Phyra76223.1;Parent=Phyra76223;constitutive=1;rank=1 scaffold_16 . biological_region 555050 555053 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 554791 556743 . + . ID=Phyra76224;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000178;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 554791 556743 . + . ID=Phyra76224;Parent=Phyra76224;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 554791 556743 . + 0 ID=Phyra76224;Parent=Phyra76224;rank=1 scaffold_16 . exon 554791 556743 . + . ID=Phyra76224.1;Parent=Phyra76224;constitutive=1;rank=1 scaffold_16 . repeat_region 558675 558738 . ? . description=dust scaffold_16 . repeat_region 560720 560728 . ? . description=dust scaffold_16 ensembl protein_coding_gene 562082 563304 . - . ID=Phyra42504;biotype=protein_coding;external_name=gwEuk.16.152.1;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 562082 563304 . - . ID=Phyra42504;Parent=Phyra42504;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 562082 562410 . - 0 ID=Phyra42504;Parent=Phyra42504;rank=6 scaffold_16 . exon 562082 562410 . - . ID=Phyra42504.6;Parent=Phyra42504;constitutive=1;ensembl_phase=1;rank=6 scaffold_16 . CDS 562497 562620 . - 0 ID=Phyra42504;Parent=Phyra42504;rank=5 scaffold_16 . exon 562497 562620 . - . ID=Phyra42504.5;Parent=Phyra42504;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_16 . CDS 562690 562867 . - 0 ID=Phyra42504;Parent=Phyra42504;rank=4 scaffold_16 . exon 562690 562867 . - . ID=Phyra42504.4;Parent=Phyra42504;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . CDS 562926 562980 . - 0 ID=Phyra42504;Parent=Phyra42504;rank=3 scaffold_16 . exon 562926 562980 . - . ID=Phyra42504.3;Parent=Phyra42504;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_16 . CDS 563046 563139 . - 0 ID=Phyra42504;Parent=Phyra42504;rank=2 scaffold_16 . exon 563046 563139 . - . ID=Phyra42504.2;Parent=Phyra42504;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 563212 563304 . - 0 ID=Phyra42504;Parent=Phyra42504;rank=1 scaffold_16 . exon 563212 563304 . - . ID=Phyra42504.1;Parent=Phyra42504;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 557550 559058 . - . ID=Phyra71402;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000022;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 557550 559058 . - . ID=Phyra71402;Parent=Phyra71402;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 557550 558644 . - 0 ID=Phyra71402;Parent=Phyra71402;rank=2 scaffold_16 . exon 557550 558644 . - . ID=Phyra71402.2;Parent=Phyra71402;constitutive=1;rank=2 scaffold_16 . CDS 558933 559058 . - 0 ID=Phyra71402;Parent=Phyra71402;rank=1 scaffold_16 . exon 558933 559058 . - . ID=Phyra71402.1;Parent=Phyra71402;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 559913 562027 . + . ID=Phyra71403;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_16000023;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 559913 562027 . + . ID=Phyra71403;Parent=Phyra71403;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 559913 560515 . + 0 ID=Phyra71403;Parent=Phyra71403;rank=1 scaffold_16 . exon 559913 560515 . + . ID=Phyra71403.1;Parent=Phyra71403;constitutive=1;rank=1 scaffold_16 . CDS 560577 560693 . + 0 ID=Phyra71403;Parent=Phyra71403;rank=2 scaffold_16 . exon 560577 560693 . + . ID=Phyra71403.2;Parent=Phyra71403;constitutive=1;rank=2 scaffold_16 . CDS 560768 560919 . + 0 ID=Phyra71403;Parent=Phyra71403;rank=3 scaffold_16 . exon 560768 560919 . + . ID=Phyra71403.3;Parent=Phyra71403;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_16 . CDS 560985 561054 . + 0 ID=Phyra71403;Parent=Phyra71403;rank=4 scaffold_16 . exon 560985 561054 . + . ID=Phyra71403.4;Parent=Phyra71403;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . CDS 561124 561383 . + 0 ID=Phyra71403;Parent=Phyra71403;rank=5 scaffold_16 . exon 561124 561383 . + . ID=Phyra71403.5;Parent=Phyra71403;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_16 . CDS 561737 561851 . + 0 ID=Phyra71403;Parent=Phyra71403;rank=6 scaffold_16 . exon 561737 561851 . + . ID=Phyra71403.6;Parent=Phyra71403;constitutive=1;ensembl_phase=2;rank=6 scaffold_16 . CDS 561920 562027 . + 0 ID=Phyra71403;Parent=Phyra71403;rank=7 scaffold_16 . exon 561920 562027 . + . ID=Phyra71403.7;Parent=Phyra71403;constitutive=1;rank=7 scaffold_16 ensembl protein_coding_gene 563989 564931 . + . ID=Phyra94422;biotype=protein_coding;external_name=C_scaffold_16000079;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 563989 564931 . + . ID=Phyra94422;Parent=Phyra94422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 563989 564073 . + 0 ID=Phyra94422;Parent=Phyra94422;rank=1 scaffold_16 . exon 563989 564073 . + . ID=Phyra94422.1;Parent=Phyra94422;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 564167 564270 . + 0 ID=Phyra94422;Parent=Phyra94422;rank=2 scaffold_16 . exon 564167 564270 . + . ID=Phyra94422.2;Parent=Phyra94422;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 564326 564484 . + 0 ID=Phyra94422;Parent=Phyra94422;rank=3 scaffold_16 . exon 564326 564484 . + . ID=Phyra94422.3;Parent=Phyra94422;constitutive=1;rank=3 scaffold_16 . CDS 564568 564702 . + 0 ID=Phyra94422;Parent=Phyra94422;rank=4 scaffold_16 . exon 564568 564702 . + . ID=Phyra94422.4;Parent=Phyra94422;constitutive=1;rank=4 scaffold_16 . CDS 564779 564850 . + 0 ID=Phyra94422;Parent=Phyra94422;rank=5 scaffold_16 . exon 564779 564850 . + . ID=Phyra94422.5;Parent=Phyra94422;constitutive=1;rank=5 scaffold_16 . CDS 564875 564931 . + 0 ID=Phyra94422;Parent=Phyra94422;rank=6 scaffold_16 . exon 564875 564931 . + . ID=Phyra94422.6;Parent=Phyra94422;constitutive=1;rank=6 scaffold_16 . biological_region 565457 565460 0.999 + . logic_name=eponine scaffold_16 . biological_region 565481 565483 0.999 - . logic_name=eponine scaffold_16 . biological_region 565611 565611 0.999 + . logic_name=eponine scaffold_16 . biological_region 571069 571069 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 567259 567726 . - . ID=Phyra42509;biotype=protein_coding;external_name=gwEuk.16.157.1;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 567259 567726 . - . ID=Phyra42509;Parent=Phyra42509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 567259 567726 . - 0 ID=Phyra42509;Parent=Phyra42509;rank=1 scaffold_16 . exon 567259 567726 . - . ID=Phyra42509.1;Parent=Phyra42509;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 570991 574508 . + . ID=Phyra76229;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000183;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 570991 574508 . + . ID=Phyra76229;Parent=Phyra76229;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 570991 571131 . + 0 ID=Phyra76229;Parent=Phyra76229;rank=1 scaffold_16 . exon 570991 571131 . + . ID=Phyra76229.1;Parent=Phyra76229;constitutive=1;rank=1 scaffold_16 . CDS 571234 571339 . + 0 ID=Phyra76229;Parent=Phyra76229;rank=2 scaffold_16 . exon 571234 571339 . + . ID=Phyra76229.2;Parent=Phyra76229;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 571442 572695 . + 0 ID=Phyra76229;Parent=Phyra76229;rank=3 scaffold_16 . exon 571442 572695 . + . ID=Phyra76229.3;Parent=Phyra76229;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 572756 572769 . + 0 ID=Phyra76229;Parent=Phyra76229;rank=4 scaffold_16 . exon 572756 572769 . + . ID=Phyra76229.4;Parent=Phyra76229;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 573044 573070 . + 0 ID=Phyra76229;Parent=Phyra76229;rank=5 scaffold_16 . exon 573044 573070 . + . ID=Phyra76229.5;Parent=Phyra76229;constitutive=1;rank=5 scaffold_16 . CDS 573308 573398 . + 0 ID=Phyra76229;Parent=Phyra76229;rank=6 scaffold_16 . exon 573308 573398 . + . ID=Phyra76229.6;Parent=Phyra76229;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_16 . CDS 573693 573838 . + 0 ID=Phyra76229;Parent=Phyra76229;rank=7 scaffold_16 . exon 573693 573838 . + . ID=Phyra76229.7;Parent=Phyra76229;constitutive=1;ensembl_phase=1;rank=7 scaffold_16 . CDS 573936 574508 . + 0 ID=Phyra76229;Parent=Phyra76229;rank=8 scaffold_16 . exon 573936 574508 . + . ID=Phyra76229.8;Parent=Phyra76229;constitutive=1;rank=8 scaffold_16 ensembl protein_coding_gene 569033 570851 . - . ID=Phyra94425;biotype=protein_coding;external_name=C_scaffold_16000082;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 569033 570851 . - . ID=Phyra94425;Parent=Phyra94425;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 569033 569139 . - 0 ID=Phyra94425;Parent=Phyra94425;rank=8 scaffold_16 . exon 569033 569139 . - . ID=Phyra94425.8;Parent=Phyra94425;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_16 . CDS 569213 569292 . - 0 ID=Phyra94425;Parent=Phyra94425;rank=7 scaffold_16 . exon 569213 569292 . - . ID=Phyra94425.7;Parent=Phyra94425;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_16 . CDS 569354 569602 . - 0 ID=Phyra94425;Parent=Phyra94425;rank=6 scaffold_16 . exon 569354 569602 . - . ID=Phyra94425.6;Parent=Phyra94425;constitutive=1;rank=6 scaffold_16 . CDS 569700 569864 . - 0 ID=Phyra94425;Parent=Phyra94425;rank=5 scaffold_16 . exon 569700 569864 . - . ID=Phyra94425.5;Parent=Phyra94425;constitutive=1;rank=5 scaffold_16 . CDS 570003 570103 . - 0 ID=Phyra94425;Parent=Phyra94425;rank=4 scaffold_16 . exon 570003 570103 . - . ID=Phyra94425.4;Parent=Phyra94425;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 570171 570246 . - 0 ID=Phyra94425;Parent=Phyra94425;rank=3 scaffold_16 . exon 570171 570246 . - . ID=Phyra94425.3;Parent=Phyra94425;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_16 . CDS 570321 570641 . - 0 ID=Phyra94425;Parent=Phyra94425;rank=2 scaffold_16 . exon 570321 570641 . - . ID=Phyra94425.2;Parent=Phyra94425;constitutive=1;rank=2 scaffold_16 . CDS 570720 570851 . - 0 ID=Phyra94425;Parent=Phyra94425;rank=1 scaffold_16 . exon 570720 570851 . - . ID=Phyra94425.1;Parent=Phyra94425;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 574615 576481 . - . ID=Phyra94428;biotype=protein_coding;external_name=C_scaffold_16000085;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 574615 576481 . - . ID=Phyra94428;Parent=Phyra94428;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 574615 574877 . - 0 ID=Phyra94428;Parent=Phyra94428;rank=4 scaffold_16 . exon 574615 574877 . - . ID=Phyra94428.4;Parent=Phyra94428;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 575028 575047 . - 0 ID=Phyra94428;Parent=Phyra94428;rank=3 scaffold_16 . exon 575028 575047 . - . ID=Phyra94428.3;Parent=Phyra94428;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 575135 575535 . - 0 ID=Phyra94428;Parent=Phyra94428;rank=2 scaffold_16 . CDS 576056 576481 . - 0 ID=Phyra94428;Parent=Phyra94428;rank=1 scaffold_16 . exon 575135 575535 . - . ID=Phyra94428.2;Parent=Phyra94428;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_16 . exon 576056 576481 . - . ID=Phyra94428.1;Parent=Phyra94428;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 579292 581914 . - . ID=Phyra94429;biotype=protein_coding;external_name=C_scaffold_16000086;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 579292 581914 . - . ID=Phyra94429;Parent=Phyra94429;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 579292 579300 . - 0 ID=Phyra94429;Parent=Phyra94429;rank=8 scaffold_16 . exon 579292 579300 . - . ID=Phyra94429.8;Parent=Phyra94429;constitutive=1;rank=8 scaffold_16 . CDS 579572 579685 . - 0 ID=Phyra94429;Parent=Phyra94429;rank=7 scaffold_16 . exon 579572 579685 . - . ID=Phyra94429.7;Parent=Phyra94429;constitutive=1;rank=7 scaffold_16 . CDS 579778 580122 . - 0 ID=Phyra94429;Parent=Phyra94429;rank=6 scaffold_16 . exon 579778 580122 . - . ID=Phyra94429.6;Parent=Phyra94429;constitutive=1;rank=6 scaffold_16 . CDS 580228 580466 . - 0 ID=Phyra94429;Parent=Phyra94429;rank=5 scaffold_16 . exon 580228 580466 . - . ID=Phyra94429.5;Parent=Phyra94429;constitutive=1;ensembl_phase=1;rank=5 scaffold_16 . CDS 580827 581000 . - 0 ID=Phyra94429;Parent=Phyra94429;rank=4 scaffold_16 . exon 580827 581000 . - . ID=Phyra94429.4;Parent=Phyra94429;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 581079 581349 . - 0 ID=Phyra94429;Parent=Phyra94429;rank=3 scaffold_16 . exon 581079 581349 . - . ID=Phyra94429.3;Parent=Phyra94429;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_16 . CDS 581414 581546 . - 0 ID=Phyra94429;Parent=Phyra94429;rank=2 scaffold_16 . exon 581414 581546 . - . ID=Phyra94429.2;Parent=Phyra94429;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 581703 581914 . - 0 ID=Phyra94429;Parent=Phyra94429;rank=1 scaffold_16 . exon 581703 581914 . - . ID=Phyra94429.1;Parent=Phyra94429;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 583442 589990 . - . ID=Phyra94431;biotype=protein_coding;external_name=C_scaffold_16000088;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 583442 589990 . - . ID=Phyra94431;Parent=Phyra94431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 583442 583767 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=18 scaffold_16 . exon 583442 583767 . - . ID=Phyra94431.18;Parent=Phyra94431;constitutive=1;ensembl_phase=1;rank=18 scaffold_16 . CDS 583924 584188 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=17 scaffold_16 . exon 583924 584188 . - . ID=Phyra94431.17;Parent=Phyra94431;constitutive=1;ensembl_end_phase=1;rank=17 scaffold_16 . CDS 584210 584326 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=16 scaffold_16 . exon 584210 584326 . - . ID=Phyra94431.16;Parent=Phyra94431;constitutive=1;rank=16 scaffold_16 . CDS 584390 584569 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=15 scaffold_16 . exon 584390 584569 . - . ID=Phyra94431.15;Parent=Phyra94431;constitutive=1;rank=15 scaffold_16 . CDS 584594 584675 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=14 scaffold_16 . exon 584594 584675 . - . ID=Phyra94431.14;Parent=Phyra94431;constitutive=1;ensembl_phase=2;rank=14 scaffold_16 . CDS 584851 585160 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=13 scaffold_16 . exon 584851 585160 . - . ID=Phyra94431.13;Parent=Phyra94431;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=13 scaffold_16 . CDS 585200 586642 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=12 scaffold_16 . CDS 586780 587025 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=11 scaffold_16 . CDS 587278 588494 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=10 scaffold_16 . CDS 588685 588753 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=9 scaffold_16 . CDS 588828 588942 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=8 scaffold_16 . CDS 589013 589136 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=7 scaffold_16 . CDS 589204 589327 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=6 scaffold_16 . CDS 589375 589474 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=5 scaffold_16 . CDS 589556 589623 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=4 scaffold_16 . CDS 589701 589804 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=3 scaffold_16 . CDS 589866 589898 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=2 scaffold_16 . CDS 589970 589990 . - 0 ID=Phyra94431;Parent=Phyra94431;rank=1 scaffold_16 . biological_region 586855 586858 0.999 + . logic_name=eponine scaffold_16 . biological_region 586911 586914 0.999 + . logic_name=eponine scaffold_16 . biological_region 586961 586966 0.999 - . logic_name=eponine scaffold_16 . biological_region 587457 587458 0.999 + . logic_name=eponine scaffold_16 . biological_region 590097 590099 0.999 - . logic_name=eponine scaffold_16 . biological_region 590365 590369 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 590205 592323 . + . ID=Phyra76235;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000189;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 590205 592323 . + . ID=Phyra76235;Parent=Phyra76235;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 590205 591106 . + 0 ID=Phyra76235;Parent=Phyra76235;rank=1 scaffold_16 . exon 590205 591106 . + . ID=Phyra76235.1;Parent=Phyra76235;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 591198 591360 . + 0 ID=Phyra76235;Parent=Phyra76235;rank=2 scaffold_16 . exon 591198 591360 . + . ID=Phyra76235.2;Parent=Phyra76235;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 591612 592060 . + 0 ID=Phyra76235;Parent=Phyra76235;rank=3 scaffold_16 . exon 591612 592060 . + . ID=Phyra76235.3;Parent=Phyra76235;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_16 . CDS 592083 592323 . + 0 ID=Phyra76235;Parent=Phyra76235;rank=4 scaffold_16 . exon 592083 592323 . + . ID=Phyra76235.4;Parent=Phyra76235;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 ensembl protein_coding_gene 592583 597450 . + . ID=Phyra76236;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000190;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 592583 597450 . + . ID=Phyra76236;Parent=Phyra76236;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 592583 593079 . + 0 ID=Phyra76236;Parent=Phyra76236;rank=1 scaffold_16 . exon 592583 593079 . + . ID=Phyra76236.1;Parent=Phyra76236;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 593147 593292 . + 0 ID=Phyra76236;Parent=Phyra76236;rank=2 scaffold_16 . exon 593147 593292 . + . ID=Phyra76236.2;Parent=Phyra76236;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 593633 594086 . + 0 ID=Phyra76236;Parent=Phyra76236;rank=3 scaffold_16 . exon 593633 594086 . + . ID=Phyra76236.3;Parent=Phyra76236;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_16 . CDS 594160 594328 . + 0 ID=Phyra76236;Parent=Phyra76236;rank=4 scaffold_16 . exon 594160 594328 . + . ID=Phyra76236.4;Parent=Phyra76236;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . CDS 594432 594584 . + 0 ID=Phyra76236;Parent=Phyra76236;rank=5 scaffold_16 . exon 594432 594584 . + . ID=Phyra76236.5;Parent=Phyra76236;constitutive=1;rank=5 scaffold_16 . CDS 594669 595079 . + 0 ID=Phyra76236;Parent=Phyra76236;rank=6 scaffold_16 . exon 594669 595079 . + . ID=Phyra76236.6;Parent=Phyra76236;constitutive=1;rank=6 scaffold_16 . CDS 595269 595882 . + 0 ID=Phyra76236;Parent=Phyra76236;rank=7 scaffold_16 . CDS 596160 597009 . + 0 ID=Phyra76236;Parent=Phyra76236;rank=8 scaffold_16 . CDS 597103 597450 . + 0 ID=Phyra76236;Parent=Phyra76236;rank=9 scaffold_16 . exon 585200 586642 . - . ID=Phyra94431.12;Parent=Phyra94431;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_16 . exon 586780 587025 . - . ID=Phyra94431.11;Parent=Phyra94431;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_16 . exon 587278 588494 . - . ID=Phyra94431.10;Parent=Phyra94431;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_16 . exon 588685 588753 . - . ID=Phyra94431.9;Parent=Phyra94431;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_16 . exon 588828 588942 . - . ID=Phyra94431.8;Parent=Phyra94431;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_16 . exon 589013 589136 . - . ID=Phyra94431.7;Parent=Phyra94431;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_16 . exon 589204 589327 . - . ID=Phyra94431.6;Parent=Phyra94431;constitutive=1;ensembl_phase=2;rank=6 scaffold_16 . exon 589375 589474 . - . ID=Phyra94431.5;Parent=Phyra94431;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_16 . exon 589556 589623 . - . ID=Phyra94431.4;Parent=Phyra94431;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_16 . exon 589701 589804 . - . ID=Phyra94431.3;Parent=Phyra94431;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_16 . exon 589866 589898 . - . ID=Phyra94431.2;Parent=Phyra94431;constitutive=1;rank=2 scaffold_16 . exon 589970 589990 . - . ID=Phyra94431.1;Parent=Phyra94431;constitutive=1;rank=1 scaffold_16 . repeat_region 598853 598902 . ? . description=dust scaffold_16 . repeat_region 601257 601306 . ? . description=dust scaffold_16 . repeat_region 603254 603303 . ? . description=dust scaffold_16 . exon 595269 595882 . + . ID=Phyra76236.7;Parent=Phyra76236;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_16 . exon 596160 597009 . + . ID=Phyra76236.8;Parent=Phyra76236;constitutive=1;ensembl_phase=2;rank=8 scaffold_16 . exon 597103 597450 . + . ID=Phyra76236.9;Parent=Phyra76236;constitutive=1;rank=9 scaffold_16 ensembl protein_coding_gene 599748 600818 . - . ID=Phyra76237;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000191;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 599748 600818 . - . ID=Phyra76237;Parent=Phyra76237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 599748 600818 . - 0 ID=Phyra76237;Parent=Phyra76237;rank=1 scaffold_16 . exon 599748 600818 . - . ID=Phyra76237.1;Parent=Phyra76237;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 602167 603889 . + . ID=Phyra76238;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_16000192;logic_name=jgi_phyra1 scaffold_16 ensembl transcript 602167 603889 . + . ID=Phyra76238;Parent=Phyra76238;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_16 . CDS 602167 602201 . + 0 ID=Phyra76238;Parent=Phyra76238;rank=1 scaffold_16 . exon 602167 602201 . + . ID=Phyra76238.1;Parent=Phyra76238;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 602881 603067 . + 0 ID=Phyra76238;Parent=Phyra76238;rank=2 scaffold_16 . exon 602881 603067 . + . ID=Phyra76238.2;Parent=Phyra76238;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 603332 603889 . + 0 ID=Phyra76238;Parent=Phyra76238;rank=3 scaffold_16 . exon 603332 603889 . + . ID=Phyra76238.3;Parent=Phyra76238;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_13 1 641944 scaffold_13 . repeat_region 1397 1407 . ? . description=dust scaffold_13 . biological_region 2975 2979 0.999 + . logic_name=eponine scaffold_13 . biological_region 2992 2996 0.999 - . logic_name=eponine scaffold_13 . biological_region 3038 3038 0.999 - . logic_name=eponine scaffold_13 . biological_region 3722 3722 0.999 + . logic_name=eponine scaffold_13 . biological_region 6390 6392 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 2793 3977 . + . ID=Phyra75435;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000001;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 2793 3977 . + . ID=Phyra75435;Parent=Phyra75435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 2793 3977 . + 0 ID=Phyra75435;Parent=Phyra75435;rank=1 scaffold_13 . exon 2793 3977 . + . ID=Phyra75435.1;Parent=Phyra75435;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 4583 5764 . + . ID=Phyra75436;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000002;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 4583 5764 . + . ID=Phyra75436;Parent=Phyra75436;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 4583 5764 . + 0 ID=Phyra75436;Parent=Phyra75436;rank=1 scaffold_13 . exon 4583 5764 . + . ID=Phyra75436.1;Parent=Phyra75436;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 6044 7385 . + . ID=Phyra75437;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000003;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 6044 7385 . + . ID=Phyra75437;Parent=Phyra75437;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 6044 6079 . + 0 ID=Phyra75437;Parent=Phyra75437;rank=1 scaffold_13 . exon 6044 6079 . + . ID=Phyra75437.1;Parent=Phyra75437;constitutive=1;rank=1 scaffold_13 . CDS 6162 7385 . + 0 ID=Phyra75437;Parent=Phyra75437;rank=2 scaffold_13 . exon 6162 7385 . + . ID=Phyra75437.2;Parent=Phyra75437;constitutive=1;rank=2 scaffold_13 ensembl protein_coding_gene 9214 10839 . + . ID=Phyra75438;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000004;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 9214 10839 . + . ID=Phyra75438;Parent=Phyra75438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 9214 10839 . + 0 ID=Phyra75438;Parent=Phyra75438;rank=1 scaffold_13 . exon 9214 10839 . + . ID=Phyra75438.1;Parent=Phyra75438;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 11563 12342 . + . ID=Phyra75439;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000005;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 11563 12342 . + . ID=Phyra75439;Parent=Phyra75439;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 11563 12342 . + 0 ID=Phyra75439;Parent=Phyra75439;rank=1 scaffold_13 . exon 11563 12342 . + . ID=Phyra75439.1;Parent=Phyra75439;constitutive=1;rank=1 scaffold_13 . repeat_region 14489 33446 . ? . description=dust scaffold_13 . repeat_region 33827 33872 . ? . description=trf scaffold_13 . biological_region 37674 37675 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 34695 35570 . + . ID=Phyra75440;biotype=protein_coding;description=Heat shock transcription factor [Source:UniProtKB/TrEMBL%3BAcc:C0LZI6];external_name=fgenesh1_pg.C_scaffold_13000006;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 34695 35570 . + . ID=Phyra75440;Parent=Phyra75440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 34695 35570 . + 0 ID=Phyra75440;Parent=Phyra75440;rank=1 scaffold_13 . exon 34695 35570 . + . ID=Phyra75440.1;Parent=Phyra75440;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 35845 37519 . - . ID=Phyra75441;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000007;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 35845 37519 . - . ID=Phyra75441;Parent=Phyra75441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 35845 35913 . - 0 ID=Phyra75441;Parent=Phyra75441;rank=3 scaffold_13 . exon 35845 35913 . - . ID=Phyra75441.3;Parent=Phyra75441;constitutive=1;rank=3 scaffold_13 . CDS 35999 36098 . - 0 ID=Phyra75441;Parent=Phyra75441;rank=2 scaffold_13 . exon 35999 36098 . - . ID=Phyra75441.2;Parent=Phyra75441;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 36270 37519 . - 0 ID=Phyra75441;Parent=Phyra75441;rank=1 scaffold_13 . exon 36270 37519 . - . ID=Phyra75441.1;Parent=Phyra75441;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 40709 42310 . - . ID=Phyra75442;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000008;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 40709 42310 . - . ID=Phyra75442;Parent=Phyra75442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 40709 40807 . - 0 ID=Phyra75442;Parent=Phyra75442;rank=4 scaffold_13 . exon 40709 40807 . - . ID=Phyra75442.4;Parent=Phyra75442;constitutive=1;rank=4 scaffold_13 . CDS 40876 41468 . - 0 ID=Phyra75442;Parent=Phyra75442;rank=3 scaffold_13 . exon 40876 41468 . - . ID=Phyra75442.3;Parent=Phyra75442;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 41536 41652 . - 0 ID=Phyra75442;Parent=Phyra75442;rank=2 scaffold_13 . exon 41536 41652 . - . ID=Phyra75442.2;Parent=Phyra75442;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 41722 42310 . - 0 ID=Phyra75442;Parent=Phyra75442;rank=1 scaffold_13 . exon 41722 42310 . - . ID=Phyra75442.1;Parent=Phyra75442;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 42460 43019 . + . ID=Phyra75443;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000009;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 42460 43019 . + . ID=Phyra75443;Parent=Phyra75443;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 42460 42831 . + 0 ID=Phyra75443;Parent=Phyra75443;rank=1 scaffold_13 . exon 42460 42831 . + . ID=Phyra75443.1;Parent=Phyra75443;constitutive=1;rank=1 scaffold_13 . CDS 42900 43019 . + 0 ID=Phyra75443;Parent=Phyra75443;rank=2 scaffold_13 . exon 42900 43019 . + . ID=Phyra75443.2;Parent=Phyra75443;constitutive=1;rank=2 scaffold_13 ensembl protein_coding_gene 43530 46805 . - . ID=Phyra75444;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000010;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 43530 46805 . - . ID=Phyra75444;Parent=Phyra75444;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 43530 46805 . - 0 ID=Phyra75444;Parent=Phyra75444;rank=1 scaffold_13 . exon 43530 46805 . - . ID=Phyra75444.1;Parent=Phyra75444;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 47507 49639 . + . ID=Phyra75445;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000011;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 47507 49639 . + . ID=Phyra75445;Parent=Phyra75445;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 47507 47983 . + 0 ID=Phyra75445;Parent=Phyra75445;rank=1 scaffold_13 . exon 47507 47983 . + . ID=Phyra75445.1;Parent=Phyra75445;constitutive=1;rank=1 scaffold_13 . CDS 48055 48174 . + 0 ID=Phyra75445;Parent=Phyra75445;rank=2 scaffold_13 . exon 48055 48174 . + . ID=Phyra75445.2;Parent=Phyra75445;constitutive=1;rank=2 scaffold_13 . CDS 48251 48432 . + 0 ID=Phyra75445;Parent=Phyra75445;rank=3 scaffold_13 . exon 48251 48432 . + . ID=Phyra75445.3;Parent=Phyra75445;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_13 . CDS 48703 48713 . + 0 ID=Phyra75445;Parent=Phyra75445;rank=4 scaffold_13 . exon 48703 48713 . + . ID=Phyra75445.4;Parent=Phyra75445;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 48780 49264 . + 0 ID=Phyra75445;Parent=Phyra75445;rank=5 scaffold_13 . exon 48780 49264 . + . ID=Phyra75445.5;Parent=Phyra75445;constitutive=1;ensembl_phase=1;rank=5 scaffold_13 . CDS 49363 49443 . + 0 ID=Phyra75445;Parent=Phyra75445;rank=6 scaffold_13 . exon 49363 49443 . + . ID=Phyra75445.6;Parent=Phyra75445;constitutive=1;rank=6 scaffold_13 . CDS 49535 49639 . + 0 ID=Phyra75445;Parent=Phyra75445;rank=7 scaffold_13 . biological_region 49923 49923 0.999 + . logic_name=eponine scaffold_13 . biological_region 50044 50048 0.999 - . logic_name=eponine scaffold_13 . biological_region 50381 50384 0.999 + . logic_name=eponine scaffold_13 . repeat_region 54830 54859 . ? . description=trf scaffold_13 . biological_region 56384 56389 0.999 + . logic_name=eponine scaffold_13 . biological_region 57390 57391 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 57147 58103 . + . ID=Phyra71311;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_13000001;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 57147 58103 . + . ID=Phyra71311;Parent=Phyra71311;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 57147 58103 . + 0 ID=Phyra71311;Parent=Phyra71311;rank=1 scaffold_13 . exon 57147 58103 . + . ID=Phyra71311.1;Parent=Phyra71311;constitutive=1;rank=1 scaffold_13 . exon 49535 49639 . + . ID=Phyra75445.7;Parent=Phyra75445;constitutive=1;rank=7 scaffold_13 ensembl protein_coding_gene 50544 51143 . + . ID=Phyra75446;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000012;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 50544 51143 . + . ID=Phyra75446;Parent=Phyra75446;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 50544 51143 . + 0 ID=Phyra75446;Parent=Phyra75446;rank=1 scaffold_13 . exon 50544 51143 . + . ID=Phyra75446.1;Parent=Phyra75446;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 51251 52154 . - . ID=Phyra75447;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000013;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 51251 52154 . - . ID=Phyra75447;Parent=Phyra75447;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 51251 51346 . - 0 ID=Phyra75447;Parent=Phyra75447;rank=4 scaffold_13 . exon 51251 51346 . - . ID=Phyra75447.4;Parent=Phyra75447;constitutive=1;rank=4 scaffold_13 . CDS 51415 51610 . - 0 ID=Phyra75447;Parent=Phyra75447;rank=3 scaffold_13 . exon 51415 51610 . - . ID=Phyra75447.3;Parent=Phyra75447;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 51684 51712 . - 0 ID=Phyra75447;Parent=Phyra75447;rank=2 scaffold_13 . exon 51684 51712 . - . ID=Phyra75447.2;Parent=Phyra75447;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_13 . CDS 51789 52154 . - 0 ID=Phyra75447;Parent=Phyra75447;rank=1 scaffold_13 . exon 51789 52154 . - . ID=Phyra75447.1;Parent=Phyra75447;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 52347 53051 . + . ID=Phyra75448;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000014;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 52347 53051 . + . ID=Phyra75448;Parent=Phyra75448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 52347 52935 . + 0 ID=Phyra75448;Parent=Phyra75448;rank=1 scaffold_13 . exon 52347 52935 . + . ID=Phyra75448.1;Parent=Phyra75448;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 53038 53051 . + 0 ID=Phyra75448;Parent=Phyra75448;rank=2 scaffold_13 . exon 53038 53051 . + . ID=Phyra75448.2;Parent=Phyra75448;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 ensembl protein_coding_gene 54383 54877 . + . ID=Phyra75449;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000015;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 54383 54877 . + . ID=Phyra75449;Parent=Phyra75449;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 54383 54877 . + 0 ID=Phyra75449;Parent=Phyra75449;rank=1 scaffold_13 . exon 54383 54877 . + . ID=Phyra75449.1;Parent=Phyra75449;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 56281 56937 . - . ID=Phyra75450;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000016;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 56281 56937 . - . ID=Phyra75450;Parent=Phyra75450;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 56281 56937 . - 0 ID=Phyra75450;Parent=Phyra75450;rank=1 scaffold_13 . exon 56281 56937 . - . ID=Phyra75450.1;Parent=Phyra75450;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 68636 70624 . - . ID=Phyra41098;biotype=protein_coding;external_name=gwEuk.13.171.1;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 68636 70624 . - . ID=Phyra41098;Parent=Phyra41098;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 68636 69210 . - 0 ID=Phyra41098;Parent=Phyra41098;rank=3 scaffold_13 . exon 68636 69210 . - . ID=Phyra41098.3;Parent=Phyra41098;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 69247 69424 . - 0 ID=Phyra41098;Parent=Phyra41098;rank=2 scaffold_13 . CDS 69497 70624 . - 0 ID=Phyra41098;Parent=Phyra41098;rank=1 scaffold_13 . repeat_region 70895 70938 . ? . description=trf scaffold_13 . repeat_region 71270 71394 . ? . description=dust scaffold_13 . repeat_region 71291 71341 . ? . description=trf scaffold_13 . repeat_region 71295 71367 . ? . description=trf scaffold_13 . repeat_region 71304 71374 . ? . description=trf scaffold_13 . biological_region 71765 71772 0.999 + . logic_name=eponine scaffold_13 . biological_region 71962 71965 0.999 - . logic_name=eponine scaffold_13 . biological_region 72004 72009 0.999 - . logic_name=eponine scaffold_13 . biological_region 72026 72026 0.999 - . logic_name=eponine scaffold_13 . repeat_region 72506 72528 . ? . description=dust scaffold_13 . repeat_region 74274 74309 . ? . description=trf scaffold_13 . repeat_region 74284 74315 . ? . description=trf scaffold_13 . repeat_region 76244 76292 . ? . description=trf scaffold_13 . repeat_region 76465 76472 . ? . description=dust scaffold_13 . biological_region 76727 76728 0.999 + . logic_name=eponine scaffold_13 . exon 69247 69424 . - . ID=Phyra41098.2;Parent=Phyra41098;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_13 . exon 69497 70624 . - . ID=Phyra41098.1;Parent=Phyra41098;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 71764 72770 . + . ID=Phyra75454;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000020;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 71764 72770 . + . ID=Phyra75454;Parent=Phyra75454;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 71764 72488 . + 0 ID=Phyra75454;Parent=Phyra75454;rank=1 scaffold_13 . exon 71764 72488 . + . ID=Phyra75454.1;Parent=Phyra75454;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 72560 72770 . + 0 ID=Phyra75454;Parent=Phyra75454;rank=2 scaffold_13 . exon 72560 72770 . + . ID=Phyra75454.2;Parent=Phyra75454;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 ensembl protein_coding_gene 72822 76752 . - . ID=Phyra94153;biotype=protein_coding;external_name=C_scaffold_13000006;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 72822 76752 . - . ID=Phyra94153;Parent=Phyra94153;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 72822 72973 . - 0 ID=Phyra94153;Parent=Phyra94153;rank=8 scaffold_13 . exon 72822 72973 . - . ID=Phyra94153.8;Parent=Phyra94153;constitutive=1;ensembl_phase=1;rank=8 scaffold_13 . CDS 73034 73209 . - 0 ID=Phyra94153;Parent=Phyra94153;rank=7 scaffold_13 . exon 73034 73209 . - . ID=Phyra94153.7;Parent=Phyra94153;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_13 . CDS 73273 73401 . - 0 ID=Phyra94153;Parent=Phyra94153;rank=6 scaffold_13 . exon 73273 73401 . - . ID=Phyra94153.6;Parent=Phyra94153;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_13 . CDS 73708 74317 . - 0 ID=Phyra94153;Parent=Phyra94153;rank=5 scaffold_13 . exon 73708 74317 . - . ID=Phyra94153.5;Parent=Phyra94153;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_13 . CDS 75428 75698 . - 0 ID=Phyra94153;Parent=Phyra94153;rank=4 scaffold_13 . exon 75428 75698 . - . ID=Phyra94153.4;Parent=Phyra94153;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_13 . CDS 75765 76189 . - 0 ID=Phyra94153;Parent=Phyra94153;rank=3 scaffold_13 . exon 75765 76189 . - . ID=Phyra94153.3;Parent=Phyra94153;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 76556 76631 . - 0 ID=Phyra94153;Parent=Phyra94153;rank=2 scaffold_13 . exon 76556 76631 . - . ID=Phyra94153.2;Parent=Phyra94153;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_13 . CDS 76717 76752 . - 0 ID=Phyra94153;Parent=Phyra94153;rank=1 scaffold_13 . exon 76717 76752 . - . ID=Phyra94153.1;Parent=Phyra94153;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 83245 83784 . + . ID=Phyra41102;biotype=protein_coding;external_name=gwEuk.13.175.1;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 83245 83784 . + . ID=Phyra41102;Parent=Phyra41102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 83245 83784 . + 0 ID=Phyra41102;Parent=Phyra41102;rank=1 scaffold_13 . exon 83245 83784 . + . ID=Phyra41102.1;Parent=Phyra41102;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 80720 81268 . - . ID=Phyra75456;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000022;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 80720 81268 . - . ID=Phyra75456;Parent=Phyra75456;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 80720 81268 . - 0 ID=Phyra75456;Parent=Phyra75456;rank=1 scaffold_13 . exon 80720 81268 . - . ID=Phyra75456.1;Parent=Phyra75456;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 82146 83074 . + . ID=Phyra75457;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000023;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 82146 83074 . + . ID=Phyra75457;Parent=Phyra75457;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 82146 82300 . + 0 ID=Phyra75457;Parent=Phyra75457;rank=1 scaffold_13 . exon 82146 82300 . + . ID=Phyra75457.1;Parent=Phyra75457;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 82366 82400 . + 0 ID=Phyra75457;Parent=Phyra75457;rank=2 scaffold_13 . exon 82366 82400 . + . ID=Phyra75457.2;Parent=Phyra75457;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 82462 82652 . + 0 ID=Phyra75457;Parent=Phyra75457;rank=3 scaffold_13 . exon 82462 82652 . + . ID=Phyra75457.3;Parent=Phyra75457;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 82715 82834 . + 0 ID=Phyra75457;Parent=Phyra75457;rank=4 scaffold_13 . exon 82715 82834 . + . ID=Phyra75457.4;Parent=Phyra75457;constitutive=1;rank=4 scaffold_13 . CDS 82912 83034 . + 0 ID=Phyra75457;Parent=Phyra75457;rank=5 scaffold_13 . exon 82912 83034 . + . ID=Phyra75457.5;Parent=Phyra75457;constitutive=1;rank=5 scaffold_13 . CDS 83054 83074 . + 0 ID=Phyra75457;Parent=Phyra75457;rank=6 scaffold_13 . exon 83054 83074 . + . ID=Phyra75457.6;Parent=Phyra75457;constitutive=1;rank=6 scaffold_13 ensembl protein_coding_gene 84648 85184 . + . ID=Phyra75459;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000025;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 84648 85184 . + . ID=Phyra75459;Parent=Phyra75459;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 84648 85184 . + 0 ID=Phyra75459;Parent=Phyra75459;rank=1 scaffold_13 . exon 84648 85184 . + . ID=Phyra75459.1;Parent=Phyra75459;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 87505 89105 . + . ID=Phyra75460;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000026;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 87505 89105 . + . ID=Phyra75460;Parent=Phyra75460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 87505 87799 . + 0 ID=Phyra75460;Parent=Phyra75460;rank=1 scaffold_13 . exon 87505 87799 . + . ID=Phyra75460.1;Parent=Phyra75460;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 87871 89105 . + 0 ID=Phyra75460;Parent=Phyra75460;rank=2 scaffold_13 . exon 87871 89105 . + . ID=Phyra75460.2;Parent=Phyra75460;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . biological_region 91344 91350 0.999 + . logic_name=eponine scaffold_13 . biological_region 91786 91789 0.999 - . logic_name=eponine scaffold_13 . biological_region 93058 93060 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 94784 95226 . - . ID=Phyra41112;biotype=protein_coding;external_name=gwEuk.13.185.1;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 94784 95226 . - . ID=Phyra41112;Parent=Phyra41112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 94784 94894 . - 0 ID=Phyra41112;Parent=Phyra41112;rank=2 scaffold_13 . exon 94784 94894 . - . ID=Phyra41112.2;Parent=Phyra41112;constitutive=1;rank=2 scaffold_13 . CDS 94969 95226 . - 0 ID=Phyra41112;Parent=Phyra41112;rank=1 scaffold_13 . exon 94969 95226 . - . ID=Phyra41112.1;Parent=Phyra41112;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 93275 94698 . + . ID=Phyra71314;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_13000004;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 93275 94698 . + . ID=Phyra71314;Parent=Phyra71314;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 93275 93415 . + 0 ID=Phyra71314;Parent=Phyra71314;rank=1 scaffold_13 . exon 93275 93415 . + . ID=Phyra71314.1;Parent=Phyra71314;constitutive=1;rank=1 scaffold_13 . CDS 93492 93557 . + 0 ID=Phyra71314;Parent=Phyra71314;rank=2 scaffold_13 . exon 93492 93557 . + . ID=Phyra71314.2;Parent=Phyra71314;constitutive=1;rank=2 scaffold_13 . CDS 93621 93701 . + 0 ID=Phyra71314;Parent=Phyra71314;rank=3 scaffold_13 . exon 93621 93701 . + . ID=Phyra71314.3;Parent=Phyra71314;constitutive=1;rank=3 scaffold_13 . CDS 93766 94698 . + 0 ID=Phyra71314;Parent=Phyra71314;rank=4 scaffold_13 . exon 93766 94698 . + . ID=Phyra71314.4;Parent=Phyra71314;constitutive=1;rank=4 scaffold_13 ensembl protein_coding_gene 89410 91752 . - . ID=Phyra75461;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000027;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 89410 91752 . - . ID=Phyra75461;Parent=Phyra75461;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 89410 91752 . - 0 ID=Phyra75461;Parent=Phyra75461;rank=1 scaffold_13 . exon 89410 91752 . - . ID=Phyra75461.1;Parent=Phyra75461;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 92168 93124 . + . ID=Phyra75462;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000028;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 92168 93124 . + . ID=Phyra75462;Parent=Phyra75462;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 92168 93124 . + 0 ID=Phyra75462;Parent=Phyra75462;rank=1 scaffold_13 . exon 92168 93124 . + . ID=Phyra75462.1;Parent=Phyra75462;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 100157 101599 . + . ID=Phyra41113;biotype=protein_coding;external_name=gwEuk.13.186.1;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 100157 101599 . + . ID=Phyra41113;Parent=Phyra41113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 100157 100324 . + 0 ID=Phyra41113;Parent=Phyra41113;rank=1 scaffold_13 . exon 100157 100324 . + . ID=Phyra41113.1;Parent=Phyra41113;constitutive=1;rank=1 scaffold_13 . CDS 100397 101599 . + 0 ID=Phyra41113;Parent=Phyra41113;rank=2 scaffold_13 . exon 100397 101599 . + . ID=Phyra41113.2;Parent=Phyra41113;constitutive=1;rank=2 scaffold_13 ensembl protein_coding_gene 99182 99555 . + . ID=Phyra75465;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000031;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 99182 99555 . + . ID=Phyra75465;Parent=Phyra75465;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 99182 99334 . + 0 ID=Phyra75465;Parent=Phyra75465;rank=1 scaffold_13 . exon 99182 99334 . + . ID=Phyra75465.1;Parent=Phyra75465;constitutive=1;rank=1 scaffold_13 . CDS 99397 99555 . + 0 ID=Phyra75465;Parent=Phyra75465;rank=2 scaffold_13 . exon 99397 99555 . + . ID=Phyra75465.2;Parent=Phyra75465;constitutive=1;rank=2 scaffold_13 ensembl protein_coding_gene 102623 104099 . - . ID=Phyra94159;biotype=protein_coding;external_name=C_scaffold_13000012;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 102623 104099 . - . ID=Phyra94159;Parent=Phyra94159;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 102623 102709 . - 0 ID=Phyra94159;Parent=Phyra94159;rank=3 scaffold_13 . exon 102623 102709 . - . ID=Phyra94159.3;Parent=Phyra94159;constitutive=1;rank=3 scaffold_13 . CDS 102774 103211 . - 0 ID=Phyra94159;Parent=Phyra94159;rank=2 scaffold_13 . exon 102774 103211 . - . ID=Phyra94159.2;Parent=Phyra94159;constitutive=1;rank=2 scaffold_13 . CDS 103362 104099 . - 0 ID=Phyra94159;Parent=Phyra94159;rank=1 scaffold_13 . exon 103362 104099 . - . ID=Phyra94159.1;Parent=Phyra94159;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 105444 106847 . - . ID=Phyra94162;biotype=protein_coding;external_name=C_scaffold_13000015;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 105444 106847 . - . ID=Phyra94162;Parent=Phyra94162;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 105444 105742 . - 0 ID=Phyra94162;Parent=Phyra94162;rank=3 scaffold_13 . exon 105444 105742 . - . ID=Phyra94162.3;Parent=Phyra94162;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 105824 106195 . - 0 ID=Phyra94162;Parent=Phyra94162;rank=2 scaffold_13 . exon 105824 106195 . - . ID=Phyra94162.2;Parent=Phyra94162;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 106421 106847 . - 0 ID=Phyra94162;Parent=Phyra94162;rank=1 scaffold_13 . exon 106421 106847 . - . ID=Phyra94162.1;Parent=Phyra94162;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . repeat_region 113558 113630 . ? . description=trf scaffold_13 . biological_region 116601 116606 0.999 + . logic_name=eponine scaffold_13 . biological_region 117142 117144 0.999 + . logic_name=eponine scaffold_13 . biological_region 117168 117172 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 113998 115726 . - . ID=Phyra75469;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000035;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 113998 115726 . - . ID=Phyra75469;Parent=Phyra75469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 113998 114012 . - 0 ID=Phyra75469;Parent=Phyra75469;rank=4 scaffold_13 . exon 113998 114012 . - . ID=Phyra75469.4;Parent=Phyra75469;constitutive=1;rank=4 scaffold_13 . CDS 114040 114231 . - 0 ID=Phyra75469;Parent=Phyra75469;rank=3 scaffold_13 . exon 114040 114231 . - . ID=Phyra75469.3;Parent=Phyra75469;constitutive=1;rank=3 scaffold_13 . CDS 114308 114691 . - 0 ID=Phyra75469;Parent=Phyra75469;rank=2 scaffold_13 . exon 114308 114691 . - . ID=Phyra75469.2;Parent=Phyra75469;constitutive=1;rank=2 scaffold_13 . CDS 114725 115726 . - 0 ID=Phyra75469;Parent=Phyra75469;rank=1 scaffold_13 . exon 114725 115726 . - . ID=Phyra75469.1;Parent=Phyra75469;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 116549 117961 . + . ID=Phyra75470;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000036;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 116549 117961 . + . ID=Phyra75470;Parent=Phyra75470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 116549 117961 . + 0 ID=Phyra75470;Parent=Phyra75470;rank=1 scaffold_13 . exon 116549 117961 . + . ID=Phyra75470.1;Parent=Phyra75470;constitutive=1;rank=1 scaffold_13 . repeat_region 126385 126439 . ? . description=dust scaffold_13 ensembl protein_coding_gene 124751 126448 . + . ID=Phyra75472;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000038;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 124751 126448 . + . ID=Phyra75472;Parent=Phyra75472;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 124751 126448 . + 0 ID=Phyra75472;Parent=Phyra75472;rank=1 scaffold_13 . exon 124751 126448 . + . ID=Phyra75472.1;Parent=Phyra75472;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 126975 128911 . - . ID=Phyra75473;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000039;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 126975 128911 . - . ID=Phyra75473;Parent=Phyra75473;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 126975 127602 . - 0 ID=Phyra75473;Parent=Phyra75473;rank=5 scaffold_13 . exon 126975 127602 . - . ID=Phyra75473.5;Parent=Phyra75473;constitutive=1;ensembl_phase=2;rank=5 scaffold_13 . CDS 127781 128055 . - 0 ID=Phyra75473;Parent=Phyra75473;rank=4 scaffold_13 . exon 127781 128055 . - . ID=Phyra75473.4;Parent=Phyra75473;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_13 . CDS 128140 128453 . - 0 ID=Phyra75473;Parent=Phyra75473;rank=3 scaffold_13 . exon 128140 128453 . - . ID=Phyra75473.3;Parent=Phyra75473;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 128536 128754 . - 0 ID=Phyra75473;Parent=Phyra75473;rank=2 scaffold_13 . CDS 128845 128911 . - 0 ID=Phyra75473;Parent=Phyra75473;rank=1 scaffold_13 ensembl protein_coding_gene 119883 121409 . + . ID=Phyra94164;biotype=protein_coding;external_name=C_scaffold_13000017;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 119883 121409 . + . ID=Phyra94164;Parent=Phyra94164;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 119883 119977 . + 0 ID=Phyra94164;Parent=Phyra94164;rank=1 scaffold_13 . exon 119883 119977 . + . ID=Phyra94164.1;Parent=Phyra94164;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 120035 120893 . + 0 ID=Phyra94164;Parent=Phyra94164;rank=2 scaffold_13 . exon 120035 120893 . + . ID=Phyra94164.2;Parent=Phyra94164;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 120960 121208 . + 0 ID=Phyra94164;Parent=Phyra94164;rank=3 scaffold_13 . exon 120960 121208 . + . ID=Phyra94164.3;Parent=Phyra94164;constitutive=1;rank=3 scaffold_13 . CDS 121284 121409 . + 0 ID=Phyra94164;Parent=Phyra94164;rank=4 scaffold_13 . exon 121284 121409 . + . ID=Phyra94164.4;Parent=Phyra94164;constitutive=1;rank=4 scaffold_13 . repeat_region 134025 134044 . ? . description=trf scaffold_13 . repeat_region 135730 136456 . - . description=Sola3-2_PS scaffold_13 . exon 128536 128754 . - . ID=Phyra75473.2;Parent=Phyra75473;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_13 . exon 128845 128911 . - . ID=Phyra75473.1;Parent=Phyra75473;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 130378 136898 . - . ID=Phyra75474;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000040;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 130378 136898 . - . ID=Phyra75474;Parent=Phyra75474;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 130378 130851 . - 0 ID=Phyra75474;Parent=Phyra75474;rank=9 scaffold_13 . exon 130378 130851 . - . ID=Phyra75474.9;Parent=Phyra75474;constitutive=1;rank=9 scaffold_13 . CDS 130922 130982 . - 0 ID=Phyra75474;Parent=Phyra75474;rank=8 scaffold_13 . exon 130922 130982 . - . ID=Phyra75474.8;Parent=Phyra75474;constitutive=1;ensembl_phase=2;rank=8 scaffold_13 . CDS 131043 131209 . - 0 ID=Phyra75474;Parent=Phyra75474;rank=7 scaffold_13 . exon 131043 131209 . - . ID=Phyra75474.7;Parent=Phyra75474;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_13 . CDS 131287 131592 . - 0 ID=Phyra75474;Parent=Phyra75474;rank=6 scaffold_13 . exon 131287 131592 . - . ID=Phyra75474.6;Parent=Phyra75474;constitutive=1;rank=6 scaffold_13 . CDS 131660 134221 . - 0 ID=Phyra75474;Parent=Phyra75474;rank=5 scaffold_13 . exon 131660 134221 . - . ID=Phyra75474.5;Parent=Phyra75474;constitutive=1;rank=5 scaffold_13 . CDS 134242 134739 . - 0 ID=Phyra75474;Parent=Phyra75474;rank=4 scaffold_13 . exon 134242 134739 . - . ID=Phyra75474.4;Parent=Phyra75474;constitutive=1;rank=4 scaffold_13 . CDS 135115 135641 . - 0 ID=Phyra75474;Parent=Phyra75474;rank=3 scaffold_13 . exon 135115 135641 . - . ID=Phyra75474.3;Parent=Phyra75474;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 135677 136370 . - 0 ID=Phyra75474;Parent=Phyra75474;rank=2 scaffold_13 . exon 135677 136370 . - . ID=Phyra75474.2;Parent=Phyra75474;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_13 . CDS 136434 136898 . - 0 ID=Phyra75474;Parent=Phyra75474;rank=1 scaffold_13 . exon 136434 136898 . - . ID=Phyra75474.1;Parent=Phyra75474;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 138198 140039 . - . ID=Phyra75475;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000041;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 138198 140039 . - . ID=Phyra75475;Parent=Phyra75475;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 138198 140039 . - 0 ID=Phyra75475;Parent=Phyra75475;rank=1 scaffold_13 . exon 138198 140039 . - . ID=Phyra75475.1;Parent=Phyra75475;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 128986 129975 . + . ID=Phyra94166;biotype=protein_coding;external_name=C_scaffold_13000019;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 128986 129975 . + . ID=Phyra94166;Parent=Phyra94166;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 128986 129124 . + 0 ID=Phyra94166;Parent=Phyra94166;rank=1 scaffold_13 . exon 128986 129124 . + . ID=Phyra94166.1;Parent=Phyra94166;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 129179 129289 . + 0 ID=Phyra94166;Parent=Phyra94166;rank=2 scaffold_13 . exon 129179 129289 . + . ID=Phyra94166.2;Parent=Phyra94166;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 129359 129417 . + 0 ID=Phyra94166;Parent=Phyra94166;rank=3 scaffold_13 . exon 129359 129417 . + . ID=Phyra94166.3;Parent=Phyra94166;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 129478 129687 . + 0 ID=Phyra94166;Parent=Phyra94166;rank=4 scaffold_13 . exon 129478 129687 . + . ID=Phyra94166.4;Parent=Phyra94166;constitutive=1;rank=4 scaffold_13 . CDS 129859 129975 . + 0 ID=Phyra94166;Parent=Phyra94166;rank=5 scaffold_13 . exon 129859 129975 . + . ID=Phyra94166.5;Parent=Phyra94166;constitutive=1;rank=5 scaffold_13 . biological_region 140089 140096 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 142367 143917 . - . ID=Phyra75476;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000042;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 142367 143917 . - . ID=Phyra75476;Parent=Phyra75476;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 142367 143917 . - 0 ID=Phyra75476;Parent=Phyra75476;rank=1 scaffold_13 . exon 142367 143917 . - . ID=Phyra75476.1;Parent=Phyra75476;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 145394 147313 . - . ID=Phyra75477;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000043;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 145394 147313 . - . ID=Phyra75477;Parent=Phyra75477;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 145394 147313 . - 0 ID=Phyra75477;Parent=Phyra75477;rank=1 scaffold_13 . exon 145394 147313 . - . ID=Phyra75477.1;Parent=Phyra75477;constitutive=1;rank=1 scaffold_13 . repeat_region 149925 150650 . - . description=Sola3-2_PS scaffold_13 . repeat_region 150951 151004 . ? . description=trf scaffold_13 . repeat_region 152617 153344 . - . description=Sola3-2_PS scaffold_13 . repeat_region 154316 154386 . ? . description=trf scaffold_13 ensembl protein_coding_gene 149295 151226 . - . ID=Phyra75478;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000044;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 149295 151226 . - . ID=Phyra75478;Parent=Phyra75478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 149295 151226 . - 0 ID=Phyra75478;Parent=Phyra75478;rank=1 scaffold_13 . exon 149295 151226 . - . ID=Phyra75478.1;Parent=Phyra75478;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 151996 153891 . - . ID=Phyra75479;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000045;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 151996 153891 . - . ID=Phyra75479;Parent=Phyra75479;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 151996 153891 . - 0 ID=Phyra75479;Parent=Phyra75479;rank=1 scaffold_13 . exon 151996 153891 . - . ID=Phyra75479.1;Parent=Phyra75479;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 154438 156036 . + . ID=Phyra75480;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000046;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 154438 156036 . + . ID=Phyra75480;Parent=Phyra75480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 154438 154552 . + 0 ID=Phyra75480;Parent=Phyra75480;rank=1 scaffold_13 . exon 154438 154552 . + . ID=Phyra75480.1;Parent=Phyra75480;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 154646 154807 . + 0 ID=Phyra75480;Parent=Phyra75480;rank=2 scaffold_13 . exon 154646 154807 . + . ID=Phyra75480.2;Parent=Phyra75480;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 154892 155425 . + 0 ID=Phyra75480;Parent=Phyra75480;rank=3 scaffold_13 . exon 154892 155425 . + . ID=Phyra75480.3;Parent=Phyra75480;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 155496 155874 . + 0 ID=Phyra75480;Parent=Phyra75480;rank=4 scaffold_13 . exon 155496 155874 . + . ID=Phyra75480.4;Parent=Phyra75480;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_13 . CDS 155952 156036 . + 0 ID=Phyra75480;Parent=Phyra75480;rank=5 scaffold_13 . exon 155952 156036 . + . ID=Phyra75480.5;Parent=Phyra75480;constitutive=1;ensembl_phase=2;rank=5 scaffold_13 ensembl protein_coding_gene 156578 158470 . - . ID=Phyra75481;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000047;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 156578 158470 . - . ID=Phyra75481;Parent=Phyra75481;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 156578 158470 . - 0 ID=Phyra75481;Parent=Phyra75481;rank=1 scaffold_13 . exon 156578 158470 . - . ID=Phyra75481.1;Parent=Phyra75481;constitutive=1;rank=1 scaffold_13 . biological_region 162472 162475 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 158863 160672 . + . ID=Phyra75482;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000048;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 158863 160672 . + . ID=Phyra75482;Parent=Phyra75482;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 158863 160494 . + 0 ID=Phyra75482;Parent=Phyra75482;rank=1 scaffold_13 . exon 158863 160494 . + . ID=Phyra75482.1;Parent=Phyra75482;constitutive=1;rank=1 scaffold_13 . CDS 160574 160672 . + 0 ID=Phyra75482;Parent=Phyra75482;rank=2 scaffold_13 . exon 160574 160672 . + . ID=Phyra75482.2;Parent=Phyra75482;constitutive=1;rank=2 scaffold_13 ensembl protein_coding_gene 160848 165239 . - . ID=Phyra94171;biotype=protein_coding;external_name=C_scaffold_13000024;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 160848 165239 . - . ID=Phyra94171;Parent=Phyra94171;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 160848 161006 . - 0 ID=Phyra94171;Parent=Phyra94171;rank=9 scaffold_13 . exon 160848 161006 . - . ID=Phyra94171.9;Parent=Phyra94171;constitutive=1;rank=9 scaffold_13 . CDS 161058 162637 . - 0 ID=Phyra94171;Parent=Phyra94171;rank=8 scaffold_13 . exon 161058 162637 . - . ID=Phyra94171.8;Parent=Phyra94171;constitutive=1;ensembl_phase=1;rank=8 scaffold_13 . CDS 162749 162830 . - 0 ID=Phyra94171;Parent=Phyra94171;rank=7 scaffold_13 . exon 162749 162830 . - . ID=Phyra94171.7;Parent=Phyra94171;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_13 . CDS 162951 163430 . - 0 ID=Phyra94171;Parent=Phyra94171;rank=6 scaffold_13 . exon 162951 163430 . - . ID=Phyra94171.6;Parent=Phyra94171;constitutive=1;rank=6 scaffold_13 . CDS 163574 163641 . - 0 ID=Phyra94171;Parent=Phyra94171;rank=5 scaffold_13 . exon 163574 163641 . - . ID=Phyra94171.5;Parent=Phyra94171;constitutive=1;ensembl_phase=1;rank=5 scaffold_13 . CDS 163823 164342 . - 0 ID=Phyra94171;Parent=Phyra94171;rank=4 scaffold_13 . exon 163823 164342 . - . ID=Phyra94171.4;Parent=Phyra94171;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_13 . CDS 164382 164660 . - 0 ID=Phyra94171;Parent=Phyra94171;rank=3 scaffold_13 . exon 164382 164660 . - . ID=Phyra94171.3;Parent=Phyra94171;constitutive=1;rank=3 scaffold_13 . CDS 164757 164796 . - 0 ID=Phyra94171;Parent=Phyra94171;rank=2 scaffold_13 . exon 164757 164796 . - . ID=Phyra94171.2;Parent=Phyra94171;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 164842 165239 . - 0 ID=Phyra94171;Parent=Phyra94171;rank=1 scaffold_13 . exon 164842 165239 . - . ID=Phyra94171.1;Parent=Phyra94171;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 175280 176940 . - . ID=Phyra75484;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000050;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 175280 176940 . - . ID=Phyra75484;Parent=Phyra75484;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 175280 175317 . - 0 ID=Phyra75484;Parent=Phyra75484;rank=2 scaffold_13 . exon 175280 175317 . - . ID=Phyra75484.2;Parent=Phyra75484;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 175422 176940 . - 0 ID=Phyra75484;Parent=Phyra75484;rank=1 scaffold_13 . exon 175422 176940 . - . ID=Phyra75484.1;Parent=Phyra75484;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . biological_region 178451 178454 0.999 + . logic_name=eponine scaffold_13 . biological_region 181085 181086 0.999 + . logic_name=eponine scaffold_13 . repeat_region 183543 183556 . ? . description=dust scaffold_13 ensembl protein_coding_gene 179175 180041 . + . ID=Phyra71315;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_13000005;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 179175 180041 . + . ID=Phyra71315;Parent=Phyra71315;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 179175 180041 . + 0 ID=Phyra71315;Parent=Phyra71315;rank=1 scaffold_13 . exon 179175 180041 . + . ID=Phyra71315.1;Parent=Phyra71315;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 178362 178931 . + . ID=Phyra75485;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000051;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 178362 178931 . + . ID=Phyra75485;Parent=Phyra75485;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 178362 178931 . + 0 ID=Phyra75485;Parent=Phyra75485;rank=1 scaffold_13 . exon 178362 178931 . + . ID=Phyra75485.1;Parent=Phyra75485;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 180174 183327 . - . ID=Phyra75487;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000053;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 180174 183327 . - . ID=Phyra75487;Parent=Phyra75487;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 180174 182060 . - 0 ID=Phyra75487;Parent=Phyra75487;rank=6 scaffold_13 . exon 180174 182060 . - . ID=Phyra75487.6;Parent=Phyra75487;constitutive=1;rank=6 scaffold_13 . CDS 182232 182381 . - 0 ID=Phyra75487;Parent=Phyra75487;rank=5 scaffold_13 . exon 182232 182381 . - . ID=Phyra75487.5;Parent=Phyra75487;constitutive=1;rank=5 scaffold_13 . CDS 182419 182677 . - 0 ID=Phyra75487;Parent=Phyra75487;rank=4 scaffold_13 . exon 182419 182677 . - . ID=Phyra75487.4;Parent=Phyra75487;constitutive=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 182746 182932 . - 0 ID=Phyra75487;Parent=Phyra75487;rank=3 scaffold_13 . exon 182746 182932 . - . ID=Phyra75487.3;Parent=Phyra75487;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_13 . CDS 183000 183140 . - 0 ID=Phyra75487;Parent=Phyra75487;rank=2 scaffold_13 . exon 183000 183140 . - . ID=Phyra75487.2;Parent=Phyra75487;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 183207 183327 . - 0 ID=Phyra75487;Parent=Phyra75487;rank=1 scaffold_13 . exon 183207 183327 . - . ID=Phyra75487.1;Parent=Phyra75487;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 183600 187689 . - . ID=Phyra94173;biotype=protein_coding;external_name=C_scaffold_13000026;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 183600 187689 . - . ID=Phyra94173;Parent=Phyra94173;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 183600 183860 . - 0 ID=Phyra94173;Parent=Phyra94173;rank=9 scaffold_13 . exon 183600 183860 . - . ID=Phyra94173.9;Parent=Phyra94173;constitutive=1;rank=9 scaffold_13 . CDS 183885 184061 . - 0 ID=Phyra94173;Parent=Phyra94173;rank=8 scaffold_13 . exon 183885 184061 . - . ID=Phyra94173.8;Parent=Phyra94173;constitutive=1;rank=8 scaffold_13 . CDS 184083 184659 . - 0 ID=Phyra94173;Parent=Phyra94173;rank=7 scaffold_13 . exon 184083 184659 . - . ID=Phyra94173.7;Parent=Phyra94173;constitutive=1;ensembl_phase=2;rank=7 scaffold_13 . CDS 184999 185175 . - 0 ID=Phyra94173;Parent=Phyra94173;rank=6 scaffold_13 . exon 184999 185175 . - . ID=Phyra94173.6;Parent=Phyra94173;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_13 . CDS 185338 185987 . - 0 ID=Phyra94173;Parent=Phyra94173;rank=5 scaffold_13 . exon 185338 185987 . - . ID=Phyra94173.5;Parent=Phyra94173;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_13 . CDS 186009 186231 . - 0 ID=Phyra94173;Parent=Phyra94173;rank=4 scaffold_13 . exon 186009 186231 . - . ID=Phyra94173.4;Parent=Phyra94173;constitutive=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 186295 186367 . - 0 ID=Phyra94173;Parent=Phyra94173;rank=3 scaffold_13 . exon 186295 186367 . - . ID=Phyra94173.3;Parent=Phyra94173;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_13 . CDS 186439 187415 . - 0 ID=Phyra94173;Parent=Phyra94173;rank=2 scaffold_13 . exon 186439 187415 . - . ID=Phyra94173.2;Parent=Phyra94173;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 187601 187689 . - 0 ID=Phyra94173;Parent=Phyra94173;rank=1 scaffold_13 . exon 187601 187689 . - . ID=Phyra94173.1;Parent=Phyra94173;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . repeat_region 188094 188335 . ? . description=trf scaffold_13 . repeat_region 188562 188582 . ? . description=trf scaffold_13 . repeat_region 192639 192694 . ? . description=trf scaffold_13 . repeat_region 192639 192712 . ? . description=trf scaffold_13 . repeat_region 192645 192685 . ? . description=trf scaffold_13 . repeat_region 192660 192723 . ? . description=trf scaffold_13 ensembl protein_coding_gene 189527 190407 . + . ID=Phyra71316;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_13000006;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 189527 190407 . + . ID=Phyra71316;Parent=Phyra71316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 189527 189607 . + 0 ID=Phyra71316;Parent=Phyra71316;rank=1 scaffold_13 . exon 189527 189607 . + . ID=Phyra71316.1;Parent=Phyra71316;constitutive=1;rank=1 scaffold_13 . CDS 189868 190407 . + 0 ID=Phyra71316;Parent=Phyra71316;rank=2 scaffold_13 . exon 189868 190407 . + . ID=Phyra71316.2;Parent=Phyra71316;constitutive=1;rank=2 scaffold_13 ensembl protein_coding_gene 190628 192067 . - . ID=Phyra75490;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000056;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 190628 192067 . - . ID=Phyra75490;Parent=Phyra75490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 190628 192067 . - 0 ID=Phyra75490;Parent=Phyra75490;rank=1 scaffold_13 . exon 190628 192067 . - . ID=Phyra75490.1;Parent=Phyra75490;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 192303 193613 . + . ID=Phyra75491;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000057;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 192303 193613 . + . ID=Phyra75491;Parent=Phyra75491;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 192303 193613 . + 0 ID=Phyra75491;Parent=Phyra75491;rank=1 scaffold_13 . exon 192303 193613 . + . ID=Phyra75491.1;Parent=Phyra75491;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 193785 196467 . - . ID=Phyra75492;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000058;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 193785 196467 . - . ID=Phyra75492;Parent=Phyra75492;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 193785 194797 . - 0 ID=Phyra75492;Parent=Phyra75492;rank=6 scaffold_13 . exon 193785 194797 . - . ID=Phyra75492.6;Parent=Phyra75492;constitutive=1;ensembl_phase=1;rank=6 scaffold_13 . CDS 194874 194967 . - 0 ID=Phyra75492;Parent=Phyra75492;rank=5 scaffold_13 . exon 194874 194967 . - . ID=Phyra75492.5;Parent=Phyra75492;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_13 . CDS 195048 195329 . - 0 ID=Phyra75492;Parent=Phyra75492;rank=4 scaffold_13 . exon 195048 195329 . - . ID=Phyra75492.4;Parent=Phyra75492;constitutive=1;rank=4 scaffold_13 . CDS 195405 195581 . - 0 ID=Phyra75492;Parent=Phyra75492;rank=3 scaffold_13 . exon 195405 195581 . - . ID=Phyra75492.3;Parent=Phyra75492;constitutive=1;rank=3 scaffold_13 . CDS 195657 196238 . - 0 ID=Phyra75492;Parent=Phyra75492;rank=2 scaffold_13 . exon 195657 196238 . - . ID=Phyra75492.2;Parent=Phyra75492;constitutive=1;rank=2 scaffold_13 . CDS 196321 196467 . - 0 ID=Phyra75492;Parent=Phyra75492;rank=1 scaffold_13 . exon 196321 196467 . - . ID=Phyra75492.1;Parent=Phyra75492;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 196872 198404 . - . ID=Phyra75493;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000059;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 196872 198404 . - . ID=Phyra75493;Parent=Phyra75493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 196872 198404 . - 0 ID=Phyra75493;Parent=Phyra75493;rank=1 scaffold_13 . exon 196872 198404 . - . ID=Phyra75493.1;Parent=Phyra75493;constitutive=1;rank=1 scaffold_13 . biological_region 198095 198095 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 201763 203214 . - . ID=Phyra75494;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000060;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 201763 203214 . - . ID=Phyra75494;Parent=Phyra75494;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 201763 203214 . - 0 ID=Phyra75494;Parent=Phyra75494;rank=1 scaffold_13 . exon 201763 203214 . - . ID=Phyra75494.1;Parent=Phyra75494;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 203459 205953 . + . ID=Phyra75495;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000061;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 203459 205953 . + . ID=Phyra75495;Parent=Phyra75495;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 203459 203695 . + 0 ID=Phyra75495;Parent=Phyra75495;rank=1 scaffold_13 . exon 203459 203695 . + . ID=Phyra75495.1;Parent=Phyra75495;constitutive=1;rank=1 scaffold_13 . CDS 203752 204421 . + 0 ID=Phyra75495;Parent=Phyra75495;rank=2 scaffold_13 . exon 203752 204421 . + . ID=Phyra75495.2;Parent=Phyra75495;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_13 . CDS 204651 204706 . + 0 ID=Phyra75495;Parent=Phyra75495;rank=3 scaffold_13 . exon 204651 204706 . + . ID=Phyra75495.3;Parent=Phyra75495;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 204780 204906 . + 0 ID=Phyra75495;Parent=Phyra75495;rank=4 scaffold_13 . exon 204780 204906 . + . ID=Phyra75495.4;Parent=Phyra75495;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_13 . CDS 204983 205165 . + 0 ID=Phyra75495;Parent=Phyra75495;rank=5 scaffold_13 . exon 204983 205165 . + . ID=Phyra75495.5;Parent=Phyra75495;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_13 . CDS 205241 205953 . + 0 ID=Phyra75495;Parent=Phyra75495;rank=6 scaffold_13 . exon 205241 205953 . + . ID=Phyra75495.6;Parent=Phyra75495;constitutive=1;ensembl_phase=1;rank=6 scaffold_13 ensembl protein_coding_gene 206114 207074 . - . ID=Phyra75496;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000062;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 206114 207074 . - . ID=Phyra75496;Parent=Phyra75496;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 206114 206776 . - 0 ID=Phyra75496;Parent=Phyra75496;rank=2 scaffold_13 . exon 206114 206776 . - . ID=Phyra75496.2;Parent=Phyra75496;constitutive=1;rank=2 scaffold_13 . CDS 206856 207074 . - 0 ID=Phyra75496;Parent=Phyra75496;rank=1 scaffold_13 . exon 206856 207074 . - . ID=Phyra75496.1;Parent=Phyra75496;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 207396 208751 . + . ID=Phyra75497;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000063;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 207396 208751 . + . ID=Phyra75497;Parent=Phyra75497;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 207396 207547 . + 0 ID=Phyra75497;Parent=Phyra75497;rank=1 scaffold_13 . exon 207396 207547 . + . ID=Phyra75497.1;Parent=Phyra75497;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 207611 208751 . + 0 ID=Phyra75497;Parent=Phyra75497;rank=2 scaffold_13 . repeat_region 211948 211955 . ? . description=dust scaffold_13 . exon 207611 208751 . + . ID=Phyra75497.2;Parent=Phyra75497;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 ensembl protein_coding_gene 209111 210970 . - . ID=Phyra75498;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000064;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 209111 210970 . - . ID=Phyra75498;Parent=Phyra75498;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 209111 210970 . - 0 ID=Phyra75498;Parent=Phyra75498;rank=1 scaffold_13 . exon 209111 210970 . - . ID=Phyra75498.1;Parent=Phyra75498;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 215143 216558 . - . ID=Phyra75500;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000066;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 215143 216558 . - . ID=Phyra75500;Parent=Phyra75500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 215143 215207 . - 0 ID=Phyra75500;Parent=Phyra75500;rank=7 scaffold_13 . exon 215143 215207 . - . ID=Phyra75500.7;Parent=Phyra75500;constitutive=1;ensembl_phase=1;rank=7 scaffold_13 . CDS 215285 215438 . - 0 ID=Phyra75500;Parent=Phyra75500;rank=6 scaffold_13 . exon 215285 215438 . - . ID=Phyra75500.6;Parent=Phyra75500;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_13 . CDS 215516 215742 . - 0 ID=Phyra75500;Parent=Phyra75500;rank=5 scaffold_13 . exon 215516 215742 . - . ID=Phyra75500.5;Parent=Phyra75500;constitutive=1;ensembl_phase=1;rank=5 scaffold_13 . CDS 215808 216048 . - 0 ID=Phyra75500;Parent=Phyra75500;rank=4 scaffold_13 . exon 215808 216048 . - . ID=Phyra75500.4;Parent=Phyra75500;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_13 . CDS 216111 216271 . - 0 ID=Phyra75500;Parent=Phyra75500;rank=3 scaffold_13 . exon 216111 216271 . - . ID=Phyra75500.3;Parent=Phyra75500;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 216334 216389 . - 0 ID=Phyra75500;Parent=Phyra75500;rank=2 scaffold_13 . exon 216334 216389 . - . ID=Phyra75500.2;Parent=Phyra75500;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 216434 216558 . - 0 ID=Phyra75500;Parent=Phyra75500;rank=1 scaffold_13 . exon 216434 216558 . - . ID=Phyra75500.1;Parent=Phyra75500;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 211441 212334 . + . ID=Phyra94179;biotype=protein_coding;external_name=C_scaffold_13000032;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 211441 212334 . + . ID=Phyra94179;Parent=Phyra94179;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 211441 211627 . + 0 ID=Phyra94179;Parent=Phyra94179;rank=1 scaffold_13 . exon 211441 211627 . + . ID=Phyra94179.1;Parent=Phyra94179;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 211691 211749 . + 0 ID=Phyra94179;Parent=Phyra94179;rank=2 scaffold_13 . exon 211691 211749 . + . ID=Phyra94179.2;Parent=Phyra94179;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 211826 211903 . + 0 ID=Phyra94179;Parent=Phyra94179;rank=3 scaffold_13 . exon 211826 211903 . + . ID=Phyra94179.3;Parent=Phyra94179;constitutive=1;rank=3 scaffold_13 . CDS 211978 212103 . + 0 ID=Phyra94179;Parent=Phyra94179;rank=4 scaffold_13 . exon 211978 212103 . + . ID=Phyra94179.4;Parent=Phyra94179;constitutive=1;rank=4 scaffold_13 . CDS 212176 212334 . + 0 ID=Phyra94179;Parent=Phyra94179;rank=5 scaffold_13 . exon 212176 212334 . + . ID=Phyra94179.5;Parent=Phyra94179;constitutive=1;rank=5 scaffold_13 . biological_region 224566 224568 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 224212 224751 . + . ID=Phyra75504;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000070;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 224212 224751 . + . ID=Phyra75504;Parent=Phyra75504;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 224212 224751 . + 0 ID=Phyra75504;Parent=Phyra75504;rank=1 scaffold_13 . exon 224212 224751 . + . ID=Phyra75504.1;Parent=Phyra75504;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 220196 221522 . - . ID=Phyra94181;biotype=protein_coding;external_name=C_scaffold_13000034;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 220196 221522 . - . ID=Phyra94181;Parent=Phyra94181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 220196 220222 . - 0 ID=Phyra94181;Parent=Phyra94181;rank=4 scaffold_13 . exon 220196 220222 . - . ID=Phyra94181.4;Parent=Phyra94181;constitutive=1;rank=4 scaffold_13 . CDS 220293 220447 . - 0 ID=Phyra94181;Parent=Phyra94181;rank=3 scaffold_13 . exon 220293 220447 . - . ID=Phyra94181.3;Parent=Phyra94181;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 220487 220889 . - 0 ID=Phyra94181;Parent=Phyra94181;rank=2 scaffold_13 . exon 220487 220889 . - . ID=Phyra94181.2;Parent=Phyra94181;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_13 . CDS 220959 221522 . - 0 ID=Phyra94181;Parent=Phyra94181;rank=1 scaffold_13 . exon 220959 221522 . - . ID=Phyra94181.1;Parent=Phyra94181;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 221873 222885 . + . ID=Phyra94183;biotype=protein_coding;external_name=C_scaffold_13000036;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 221873 222885 . + . ID=Phyra94183;Parent=Phyra94183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 221873 222091 . + 0 ID=Phyra94183;Parent=Phyra94183;rank=1 scaffold_13 . exon 221873 222091 . + . ID=Phyra94183.1;Parent=Phyra94183;constitutive=1;rank=1 scaffold_13 . CDS 222146 222219 . + 0 ID=Phyra94183;Parent=Phyra94183;rank=2 scaffold_13 . exon 222146 222219 . + . ID=Phyra94183.2;Parent=Phyra94183;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_13 . CDS 222286 222494 . + 0 ID=Phyra94183;Parent=Phyra94183;rank=3 scaffold_13 . exon 222286 222494 . + . ID=Phyra94183.3;Parent=Phyra94183;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 222566 222687 . + 0 ID=Phyra94183;Parent=Phyra94183;rank=4 scaffold_13 . exon 222566 222687 . + . ID=Phyra94183.4;Parent=Phyra94183;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 . CDS 222760 222885 . + 0 ID=Phyra94183;Parent=Phyra94183;rank=5 scaffold_13 . exon 222760 222885 . + . ID=Phyra94183.5;Parent=Phyra94183;constitutive=1;rank=5 scaffold_13 ensembl protein_coding_gene 223046 223922 . - . ID=Phyra94186;biotype=protein_coding;external_name=C_scaffold_13000039;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 223046 223922 . - . ID=Phyra94186;Parent=Phyra94186;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 223046 223382 . - 0 ID=Phyra94186;Parent=Phyra94186;rank=3 scaffold_13 . exon 223046 223382 . - . ID=Phyra94186.3;Parent=Phyra94186;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 223445 223677 . - 0 ID=Phyra94186;Parent=Phyra94186;rank=2 scaffold_13 . exon 223445 223677 . - . ID=Phyra94186.2;Parent=Phyra94186;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_13 . CDS 223752 223922 . - 0 ID=Phyra94186;Parent=Phyra94186;rank=1 scaffold_13 . exon 223752 223922 . - . ID=Phyra94186.1;Parent=Phyra94186;constitutive=1;rank=1 scaffold_13 . repeat_region 231309 231316 . ? . description=dust scaffold_13 ensembl protein_coding_gene 230367 231299 . - . ID=Phyra71317;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_13000007;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 230367 231299 . - . ID=Phyra71317;Parent=Phyra71317;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 230367 231299 . - 0 ID=Phyra71317;Parent=Phyra71317;rank=1 scaffold_13 . exon 230367 231299 . - . ID=Phyra71317.1;Parent=Phyra71317;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 229329 229914 . - . ID=Phyra75505;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000071;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 229329 229914 . - . ID=Phyra75505;Parent=Phyra75505;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 229329 229360 . - 0 ID=Phyra75505;Parent=Phyra75505;rank=2 scaffold_13 . exon 229329 229360 . - . ID=Phyra75505.2;Parent=Phyra75505;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 229383 229914 . - 0 ID=Phyra75505;Parent=Phyra75505;rank=1 scaffold_13 . exon 229383 229914 . - . ID=Phyra75505.1;Parent=Phyra75505;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 232422 234167 . - . ID=Phyra75507;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000073;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 232422 234167 . - . ID=Phyra75507;Parent=Phyra75507;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 232422 234167 . - 0 ID=Phyra75507;Parent=Phyra75507;rank=1 scaffold_13 . exon 232422 234167 . - . ID=Phyra75507.1;Parent=Phyra75507;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 234364 234884 . + . ID=Phyra75508;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000074;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 234364 234884 . + . ID=Phyra75508;Parent=Phyra75508;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 234364 234681 . + 0 ID=Phyra75508;Parent=Phyra75508;rank=1 scaffold_13 . exon 234364 234681 . + . ID=Phyra75508.1;Parent=Phyra75508;constitutive=1;rank=1 scaffold_13 . CDS 234747 234884 . + 0 ID=Phyra75508;Parent=Phyra75508;rank=2 scaffold_13 . exon 234747 234884 . + . ID=Phyra75508.2;Parent=Phyra75508;constitutive=1;rank=2 scaffold_13 . biological_region 241487 241494 0.999 + . logic_name=eponine scaffold_13 . biological_region 241528 241531 0.999 + . logic_name=eponine scaffold_13 . biological_region 241561 241565 0.999 + . logic_name=eponine scaffold_13 . biological_region 241577 241584 0.999 + . logic_name=eponine scaffold_13 . biological_region 241583 241589 0.999 - . logic_name=eponine scaffold_13 . biological_region 241746 241749 0.999 - . logic_name=eponine scaffold_13 . biological_region 241828 241830 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 237747 245942 . + . ID=Phyra75509;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000075;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 237747 245942 . + . ID=Phyra75509;Parent=Phyra75509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 237747 238374 . + 0 ID=Phyra75509;Parent=Phyra75509;rank=1 scaffold_13 . exon 237747 238374 . + . ID=Phyra75509.1;Parent=Phyra75509;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 238891 238928 . + 0 ID=Phyra75509;Parent=Phyra75509;rank=2 scaffold_13 . exon 238891 238928 . + . ID=Phyra75509.2;Parent=Phyra75509;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 238959 240941 . + 0 ID=Phyra75509;Parent=Phyra75509;rank=3 scaffold_13 . exon 238959 240941 . + . ID=Phyra75509.3;Parent=Phyra75509;constitutive=1;rank=3 scaffold_13 . CDS 241011 241083 . + 0 ID=Phyra75509;Parent=Phyra75509;rank=4 scaffold_13 . exon 241011 241083 . + . ID=Phyra75509.4;Parent=Phyra75509;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_13 . CDS 241413 241946 . + 0 ID=Phyra75509;Parent=Phyra75509;rank=5 scaffold_13 . exon 241413 241946 . + . ID=Phyra75509.5;Parent=Phyra75509;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_13 . CDS 242186 242263 . + 0 ID=Phyra75509;Parent=Phyra75509;rank=6 scaffold_13 . exon 242186 242263 . + . ID=Phyra75509.6;Parent=Phyra75509;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_13 . CDS 242331 242422 . + 0 ID=Phyra75509;Parent=Phyra75509;rank=7 scaffold_13 . exon 242331 242422 . + . ID=Phyra75509.7;Parent=Phyra75509;constitutive=1;ensembl_phase=1;rank=7 scaffold_13 . CDS 242518 242771 . + 0 ID=Phyra75509;Parent=Phyra75509;rank=8 scaffold_13 . exon 242518 242771 . + . ID=Phyra75509.8;Parent=Phyra75509;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_13 . CDS 242864 243063 . + 0 ID=Phyra75509;Parent=Phyra75509;rank=9 scaffold_13 . exon 242864 243063 . + . ID=Phyra75509.9;Parent=Phyra75509;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_13 . CDS 243132 243301 . + 0 ID=Phyra75509;Parent=Phyra75509;rank=10 scaffold_13 . exon 243132 243301 . + . ID=Phyra75509.10;Parent=Phyra75509;constitutive=1;ensembl_phase=1;rank=10 scaffold_13 . CDS 243377 243585 . + 0 ID=Phyra75509;Parent=Phyra75509;rank=11 scaffold_13 . exon 243377 243585 . + . ID=Phyra75509.11;Parent=Phyra75509;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_13 . CDS 243693 244062 . + 0 ID=Phyra75509;Parent=Phyra75509;rank=12 scaffold_13 . exon 243693 244062 . + . ID=Phyra75509.12;Parent=Phyra75509;constitutive=1;ensembl_phase=2;rank=12 scaffold_13 . CDS 244129 244205 . + 0 ID=Phyra75509;Parent=Phyra75509;rank=13 scaffold_13 . exon 244129 244205 . + . ID=Phyra75509.13;Parent=Phyra75509;constitutive=1;ensembl_end_phase=2;rank=13 scaffold_13 . CDS 244262 244543 . + 0 ID=Phyra75509;Parent=Phyra75509;rank=14 scaffold_13 . exon 244262 244543 . + . ID=Phyra75509.14;Parent=Phyra75509;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=14 scaffold_13 . CDS 244612 245431 . + 0 ID=Phyra75509;Parent=Phyra75509;rank=15 scaffold_13 . exon 244612 245431 . + . ID=Phyra75509.15;Parent=Phyra75509;constitutive=1;ensembl_phase=2;rank=15 scaffold_13 . CDS 245509 245637 . + 0 ID=Phyra75509;Parent=Phyra75509;rank=16 scaffold_13 . exon 245509 245637 . + . ID=Phyra75509.16;Parent=Phyra75509;constitutive=1;rank=16 scaffold_13 . CDS 245718 245942 . + 0 ID=Phyra75509;Parent=Phyra75509;rank=17 scaffold_13 . exon 245718 245942 . + . ID=Phyra75509.17;Parent=Phyra75509;constitutive=1;rank=17 scaffold_13 ensembl protein_coding_gene 246735 248353 . + . ID=Phyra75510;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000076;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 246735 248353 . + . ID=Phyra75510;Parent=Phyra75510;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 246735 247348 . + 0 ID=Phyra75510;Parent=Phyra75510;rank=1 scaffold_13 . exon 246735 247348 . + . ID=Phyra75510.1;Parent=Phyra75510;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 247569 247994 . + 0 ID=Phyra75510;Parent=Phyra75510;rank=2 scaffold_13 . CDS 248076 248242 . + 0 ID=Phyra75510;Parent=Phyra75510;rank=3 scaffold_13 . CDS 248301 248353 . + 0 ID=Phyra75510;Parent=Phyra75510;rank=4 scaffold_13 . repeat_region 252001 252109 . ? . description=dust scaffold_13 ensembl protein_coding_gene 253505 254545 . - . ID=Phyra40952;biotype=protein_coding;external_name=gwEuk.13.25.1;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 253505 254545 . - . ID=Phyra40952;Parent=Phyra40952;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 253505 254545 . - 0 ID=Phyra40952;Parent=Phyra40952;rank=1 scaffold_13 . exon 253505 254545 . - . ID=Phyra40952.1;Parent=Phyra40952;constitutive=1;rank=1 scaffold_13 . exon 247569 247994 . + . ID=Phyra75510.2;Parent=Phyra75510;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_13 . exon 248076 248242 . + . ID=Phyra75510.3;Parent=Phyra75510;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_13 . exon 248301 248353 . + . ID=Phyra75510.4;Parent=Phyra75510;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 ensembl protein_coding_gene 248848 249864 . - . ID=Phyra75511;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000077;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 248848 249864 . - . ID=Phyra75511;Parent=Phyra75511;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 248848 248895 . - 0 ID=Phyra75511;Parent=Phyra75511;rank=3 scaffold_13 . exon 248848 248895 . - . ID=Phyra75511.3;Parent=Phyra75511;constitutive=1;rank=3 scaffold_13 . CDS 248949 249363 . - 0 ID=Phyra75511;Parent=Phyra75511;rank=2 scaffold_13 . exon 248949 249363 . - . ID=Phyra75511.2;Parent=Phyra75511;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 249386 249864 . - 0 ID=Phyra75511;Parent=Phyra75511;rank=1 scaffold_13 . exon 249386 249864 . - . ID=Phyra75511.1;Parent=Phyra75511;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 250907 251971 . - . ID=Phyra75512;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000078;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 250907 251971 . - . ID=Phyra75512;Parent=Phyra75512;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 250907 251971 . - 0 ID=Phyra75512;Parent=Phyra75512;rank=1 scaffold_13 . exon 250907 251971 . - . ID=Phyra75512.1;Parent=Phyra75512;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 254608 256970 . - . ID=Phyra75514;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000080;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 254608 256970 . - . ID=Phyra75514;Parent=Phyra75514;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 254608 254626 . - 0 ID=Phyra75514;Parent=Phyra75514;rank=7 scaffold_13 . exon 254608 254626 . - . ID=Phyra75514.7;Parent=Phyra75514;constitutive=1;ensembl_phase=2;rank=7 scaffold_13 . CDS 254653 254783 . - 0 ID=Phyra75514;Parent=Phyra75514;rank=6 scaffold_13 . exon 254653 254783 . - . ID=Phyra75514.6;Parent=Phyra75514;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_13 . CDS 254841 254978 . - 0 ID=Phyra75514;Parent=Phyra75514;rank=5 scaffold_13 . exon 254841 254978 . - . ID=Phyra75514.5;Parent=Phyra75514;constitutive=1;rank=5 scaffold_13 . CDS 255052 255269 . - 0 ID=Phyra75514;Parent=Phyra75514;rank=4 scaffold_13 . exon 255052 255269 . - . ID=Phyra75514.4;Parent=Phyra75514;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 . CDS 255456 256506 . - 0 ID=Phyra75514;Parent=Phyra75514;rank=3 scaffold_13 . exon 255456 256506 . - . ID=Phyra75514.3;Parent=Phyra75514;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_13 . CDS 256584 256707 . - 0 ID=Phyra75514;Parent=Phyra75514;rank=2 scaffold_13 . exon 256584 256707 . - . ID=Phyra75514.2;Parent=Phyra75514;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 256786 256970 . - 0 ID=Phyra75514;Parent=Phyra75514;rank=1 scaffold_13 . exon 256786 256970 . - . ID=Phyra75514.1;Parent=Phyra75514;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . biological_region 256973 256976 0.999 - . logic_name=eponine scaffold_13 . biological_region 256973 256979 0.999 + . logic_name=eponine scaffold_13 . biological_region 256999 257007 0.999 - . logic_name=eponine scaffold_13 . biological_region 257019 257027 0.999 - . logic_name=eponine scaffold_13 . biological_region 257232 257236 0.999 + . logic_name=eponine scaffold_13 . biological_region 258529 258535 0.999 - . logic_name=eponine scaffold_13 . biological_region 258603 258610 0.999 - . logic_name=eponine scaffold_13 . biological_region 258635 258636 0.999 + . logic_name=eponine scaffold_13 . biological_region 258838 258844 0.999 - . logic_name=eponine scaffold_13 . biological_region 260830 260831 0.999 + . logic_name=eponine scaffold_13 . biological_region 265132 265135 0.999 + . logic_name=eponine scaffold_13 . biological_region 265169 265169 0.999 - . logic_name=eponine scaffold_13 . biological_region 265414 265417 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 258450 259193 . + . ID=Phyra75515;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000081;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 258450 259193 . + . ID=Phyra75515;Parent=Phyra75515;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 258450 259193 . + 0 ID=Phyra75515;Parent=Phyra75515;rank=1 scaffold_13 . exon 258450 259193 . + . ID=Phyra75515.1;Parent=Phyra75515;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 259455 260532 . - . ID=Phyra75516;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000082;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 259455 260532 . - . ID=Phyra75516;Parent=Phyra75516;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 259455 259883 . - 0 ID=Phyra75516;Parent=Phyra75516;rank=3 scaffold_13 . exon 259455 259883 . - . ID=Phyra75516.3;Parent=Phyra75516;constitutive=1;rank=3 scaffold_13 . CDS 259961 260027 . - 0 ID=Phyra75516;Parent=Phyra75516;rank=2 scaffold_13 . exon 259961 260027 . - . ID=Phyra75516.2;Parent=Phyra75516;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 260108 260532 . - 0 ID=Phyra75516;Parent=Phyra75516;rank=1 scaffold_13 . exon 260108 260532 . - . ID=Phyra75516.1;Parent=Phyra75516;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 264931 269469 . + . ID=Phyra75519;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000085;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 264931 269469 . + . ID=Phyra75519;Parent=Phyra75519;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 264931 269469 . + 0 ID=Phyra75519;Parent=Phyra75519;rank=1 scaffold_13 . exon 264931 269469 . + . ID=Phyra75519.1;Parent=Phyra75519;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 261028 262110 . + . ID=Phyra94190;biotype=protein_coding;external_name=C_scaffold_13000043;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 261028 262110 . + . ID=Phyra94190;Parent=Phyra94190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 261028 261613 . + 0 ID=Phyra94190;Parent=Phyra94190;rank=1 scaffold_13 . exon 261028 261613 . + . ID=Phyra94190.1;Parent=Phyra94190;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 261665 262110 . + 0 ID=Phyra94190;Parent=Phyra94190;rank=2 scaffold_13 . exon 261665 262110 . + . ID=Phyra94190.2;Parent=Phyra94190;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 ensembl protein_coding_gene 262225 264543 . - . ID=Phyra94192;biotype=protein_coding;external_name=C_scaffold_13000045;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 262225 264543 . - . ID=Phyra94192;Parent=Phyra94192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 262225 262586 . - 0 ID=Phyra94192;Parent=Phyra94192;rank=6 scaffold_13 . exon 262225 262586 . - . ID=Phyra94192.6;Parent=Phyra94192;constitutive=1;ensembl_phase=1;rank=6 scaffold_13 . CDS 262719 262932 . - 0 ID=Phyra94192;Parent=Phyra94192;rank=5 scaffold_13 . exon 262719 262932 . - . ID=Phyra94192.5;Parent=Phyra94192;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_13 . CDS 263158 263721 . - 0 ID=Phyra94192;Parent=Phyra94192;rank=4 scaffold_13 . exon 263158 263721 . - . ID=Phyra94192.4;Parent=Phyra94192;constitutive=1;rank=4 scaffold_13 . CDS 263764 263808 . - 0 ID=Phyra94192;Parent=Phyra94192;rank=3 scaffold_13 . exon 263764 263808 . - . ID=Phyra94192.3;Parent=Phyra94192;constitutive=1;rank=3 scaffold_13 . CDS 263836 264291 . - 0 ID=Phyra94192;Parent=Phyra94192;rank=2 scaffold_13 . exon 263836 264291 . - . ID=Phyra94192.2;Parent=Phyra94192;constitutive=1;rank=2 scaffold_13 . CDS 264361 264543 . - 0 ID=Phyra94192;Parent=Phyra94192;rank=1 scaffold_13 . exon 264361 264543 . - . ID=Phyra94192.1;Parent=Phyra94192;constitutive=1;rank=1 scaffold_13 . repeat_region 270278 270285 . ? . description=dust scaffold_13 ensembl protein_coding_gene 271431 272955 . + . ID=Phyra75520;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000086;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 271431 272955 . + . ID=Phyra75520;Parent=Phyra75520;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 271431 271882 . + 0 ID=Phyra75520;Parent=Phyra75520;rank=1 scaffold_13 . exon 271431 271882 . + . ID=Phyra75520.1;Parent=Phyra75520;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 271953 272955 . + 0 ID=Phyra75520;Parent=Phyra75520;rank=2 scaffold_13 . exon 271953 272955 . + . ID=Phyra75520.2;Parent=Phyra75520;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 ensembl protein_coding_gene 273670 277752 . - . ID=Phyra94194;biotype=protein_coding;external_name=C_scaffold_13000047;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 273670 277752 . - . ID=Phyra94194;Parent=Phyra94194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 273670 273740 . - 0 ID=Phyra94194;Parent=Phyra94194;rank=11 scaffold_13 . exon 273670 273740 . - . ID=Phyra94194.11;Parent=Phyra94194;constitutive=1;ensembl_phase=1;rank=11 scaffold_13 . CDS 273781 273850 . - 0 ID=Phyra94194;Parent=Phyra94194;rank=10 scaffold_13 . exon 273781 273850 . - . ID=Phyra94194.10;Parent=Phyra94194;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_13 . CDS 273944 274687 . - 0 ID=Phyra94194;Parent=Phyra94194;rank=9 scaffold_13 . exon 273944 274687 . - . ID=Phyra94194.9;Parent=Phyra94194;constitutive=1;rank=9 scaffold_13 . CDS 274778 275225 . - 0 ID=Phyra94194;Parent=Phyra94194;rank=8 scaffold_13 . exon 274778 275225 . - . ID=Phyra94194.8;Parent=Phyra94194;constitutive=1;ensembl_phase=2;rank=8 scaffold_13 . CDS 275394 275505 . - 0 ID=Phyra94194;Parent=Phyra94194;rank=7 scaffold_13 . exon 275394 275505 . - . ID=Phyra94194.7;Parent=Phyra94194;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_13 . CDS 275575 275820 . - 0 ID=Phyra94194;Parent=Phyra94194;rank=6 scaffold_13 . exon 275575 275820 . - . ID=Phyra94194.6;Parent=Phyra94194;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_13 . CDS 275878 276448 . - 0 ID=Phyra94194;Parent=Phyra94194;rank=5 scaffold_13 . exon 275878 276448 . - . ID=Phyra94194.5;Parent=Phyra94194;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_13 . CDS 276965 277095 . - 0 ID=Phyra94194;Parent=Phyra94194;rank=4 scaffold_13 . CDS 277167 277317 . - 0 ID=Phyra94194;Parent=Phyra94194;rank=3 scaffold_13 . CDS 277387 277507 . - 0 ID=Phyra94194;Parent=Phyra94194;rank=2 scaffold_13 . CDS 277580 277752 . - 0 ID=Phyra94194;Parent=Phyra94194;rank=1 scaffold_13 . biological_region 277662 277665 0.999 + . logic_name=eponine scaffold_13 . biological_region 277784 277789 0.999 - . logic_name=eponine scaffold_13 . biological_region 285614 285615 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 279171 279938 . - . ID=Phyra71319;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_13000009;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 279171 279938 . - . ID=Phyra71319;Parent=Phyra71319;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 279171 279938 . - 0 ID=Phyra71319;Parent=Phyra71319;rank=1 scaffold_13 . exon 279171 279938 . - . ID=Phyra71319.1;Parent=Phyra71319;constitutive=1;rank=1 scaffold_13 . exon 276965 277095 . - . ID=Phyra94194.4;Parent=Phyra94194;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 . exon 277167 277317 . - . ID=Phyra94194.3;Parent=Phyra94194;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_13 . exon 277387 277507 . - . ID=Phyra94194.2;Parent=Phyra94194;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . exon 277580 277752 . - . ID=Phyra94194.1;Parent=Phyra94194;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . repeat_region 295395 295432 . ? . description=trf scaffold_13 ensembl protein_coding_gene 289728 290311 . - . ID=Phyra75524;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000090;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 289728 290311 . - . ID=Phyra75524;Parent=Phyra75524;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 289728 289766 . - 0 ID=Phyra75524;Parent=Phyra75524;rank=2 scaffold_13 . exon 289728 289766 . - . ID=Phyra75524.2;Parent=Phyra75524;constitutive=1;rank=2 scaffold_13 . CDS 290018 290311 . - 0 ID=Phyra75524;Parent=Phyra75524;rank=1 scaffold_13 . exon 290018 290311 . - . ID=Phyra75524.1;Parent=Phyra75524;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 290613 292745 . + . ID=Phyra75525;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000091;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 290613 292745 . + . ID=Phyra75525;Parent=Phyra75525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 290613 291840 . + 0 ID=Phyra75525;Parent=Phyra75525;rank=1 scaffold_13 . exon 290613 291840 . + . ID=Phyra75525.1;Parent=Phyra75525;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 292300 292745 . + 0 ID=Phyra75525;Parent=Phyra75525;rank=2 scaffold_13 . exon 292300 292745 . + . ID=Phyra75525.2;Parent=Phyra75525;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 ensembl protein_coding_gene 293173 294543 . - . ID=Phyra75526;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000092;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 293173 294543 . - . ID=Phyra75526;Parent=Phyra75526;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 293173 294543 . - 0 ID=Phyra75526;Parent=Phyra75526;rank=1 scaffold_13 . exon 293173 294543 . - . ID=Phyra75526.1;Parent=Phyra75526;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 295868 297133 . + . ID=Phyra75527;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000093;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 295868 297133 . + . ID=Phyra75527;Parent=Phyra75527;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 295868 297133 . + 0 ID=Phyra75527;Parent=Phyra75527;rank=1 scaffold_13 . exon 295868 297133 . + . ID=Phyra75527.1;Parent=Phyra75527;constitutive=1;rank=1 scaffold_13 . biological_region 300216 300219 0.999 + . logic_name=eponine scaffold_13 . biological_region 300307 300309 0.999 - . logic_name=eponine scaffold_13 . biological_region 301246 301247 0.999 + . logic_name=eponine scaffold_13 . biological_region 301423 301429 0.999 - . logic_name=eponine scaffold_13 . biological_region 301684 301689 0.999 + . logic_name=eponine scaffold_13 . biological_region 301739 301739 0.999 - . logic_name=eponine scaffold_13 . biological_region 301932 301940 0.999 - . logic_name=eponine scaffold_13 . biological_region 301988 301989 0.999 - . logic_name=eponine scaffold_13 . biological_region 302185 302189 0.999 + . logic_name=eponine scaffold_13 . biological_region 304989 304989 0.999 + . logic_name=eponine scaffold_13 . biological_region 305002 305003 0.999 + . logic_name=eponine scaffold_13 . biological_region 305265 305267 0.999 - . logic_name=eponine scaffold_13 . biological_region 305317 305320 0.999 - . logic_name=eponine scaffold_13 . repeat_region 305361 305380 . ? . description=dust scaffold_13 . biological_region 305373 305375 0.999 + . logic_name=eponine scaffold_13 . biological_region 305394 305394 0.999 - . logic_name=eponine scaffold_13 . biological_region 305494 305498 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 299290 299604 . - . ID=Phyra71320;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_13000010;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 299290 299604 . - . ID=Phyra71320;Parent=Phyra71320;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 299290 299604 . - 0 ID=Phyra71320;Parent=Phyra71320;rank=1 scaffold_13 . exon 299290 299604 . - . ID=Phyra71320.1;Parent=Phyra71320;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 297286 298727 . - . ID=Phyra75528;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000094;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 297286 298727 . - . ID=Phyra75528;Parent=Phyra75528;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 297286 297452 . - 0 ID=Phyra75528;Parent=Phyra75528;rank=7 scaffold_13 . exon 297286 297452 . - . ID=Phyra75528.7;Parent=Phyra75528;constitutive=1;ensembl_phase=1;rank=7 scaffold_13 . CDS 297519 297604 . - 0 ID=Phyra75528;Parent=Phyra75528;rank=6 scaffold_13 . exon 297519 297604 . - . ID=Phyra75528.6;Parent=Phyra75528;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_13 . CDS 297688 297796 . - 0 ID=Phyra75528;Parent=Phyra75528;rank=5 scaffold_13 . exon 297688 297796 . - . ID=Phyra75528.5;Parent=Phyra75528;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_13 . CDS 297864 298084 . - 0 ID=Phyra75528;Parent=Phyra75528;rank=4 scaffold_13 . exon 297864 298084 . - . ID=Phyra75528.4;Parent=Phyra75528;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 298153 298302 . - 0 ID=Phyra75528;Parent=Phyra75528;rank=3 scaffold_13 . exon 298153 298302 . - . ID=Phyra75528.3;Parent=Phyra75528;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_13 . CDS 298388 298515 . - 0 ID=Phyra75528;Parent=Phyra75528;rank=2 scaffold_13 . exon 298388 298515 . - . ID=Phyra75528.2;Parent=Phyra75528;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_13 . CDS 298587 298727 . - 0 ID=Phyra75528;Parent=Phyra75528;rank=1 scaffold_13 . exon 298587 298727 . - . ID=Phyra75528.1;Parent=Phyra75528;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 299993 300682 . - . ID=Phyra75530;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000096;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 299993 300682 . - . ID=Phyra75530;Parent=Phyra75530;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 299993 300682 . - 0 ID=Phyra75530;Parent=Phyra75530;rank=1 scaffold_13 . exon 299993 300682 . - . ID=Phyra75530.1;Parent=Phyra75530;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 301711 302904 . + . ID=Phyra75531;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000097;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 301711 302904 . + . ID=Phyra75531;Parent=Phyra75531;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 301711 302904 . + 0 ID=Phyra75531;Parent=Phyra75531;rank=1 scaffold_13 . exon 301711 302904 . + . ID=Phyra75531.1;Parent=Phyra75531;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 303074 303952 . - . ID=Phyra75532;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000098;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 303074 303952 . - . ID=Phyra75532;Parent=Phyra75532;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 303074 303211 . - 0 ID=Phyra75532;Parent=Phyra75532;rank=5 scaffold_13 . exon 303074 303211 . - . ID=Phyra75532.5;Parent=Phyra75532;constitutive=1;rank=5 scaffold_13 . CDS 303282 303346 . - 0 ID=Phyra75532;Parent=Phyra75532;rank=4 scaffold_13 . exon 303282 303346 . - . ID=Phyra75532.4;Parent=Phyra75532;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 . CDS 303427 303500 . - 0 ID=Phyra75532;Parent=Phyra75532;rank=3 scaffold_13 . exon 303427 303500 . - . ID=Phyra75532.3;Parent=Phyra75532;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 303588 303707 . - 0 ID=Phyra75532;Parent=Phyra75532;rank=2 scaffold_13 . exon 303588 303707 . - . ID=Phyra75532.2;Parent=Phyra75532;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_13 . CDS 303792 303952 . - 0 ID=Phyra75532;Parent=Phyra75532;rank=1 scaffold_13 . exon 303792 303952 . - . ID=Phyra75532.1;Parent=Phyra75532;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 305104 307553 . + . ID=Phyra75533;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000099;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 305104 307553 . + . ID=Phyra75533;Parent=Phyra75533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 305104 306044 . + 0 ID=Phyra75533;Parent=Phyra75533;rank=1 scaffold_13 . exon 305104 306044 . + . ID=Phyra75533.1;Parent=Phyra75533;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 306121 306536 . + 0 ID=Phyra75533;Parent=Phyra75533;rank=2 scaffold_13 . exon 306121 306536 . + . ID=Phyra75533.2;Parent=Phyra75533;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 306573 306728 . + 0 ID=Phyra75533;Parent=Phyra75533;rank=3 scaffold_13 . CDS 306806 306900 . + 0 ID=Phyra75533;Parent=Phyra75533;rank=4 scaffold_13 . CDS 307023 307266 . + 0 ID=Phyra75533;Parent=Phyra75533;rank=5 scaffold_13 . CDS 307345 307553 . + 0 ID=Phyra75533;Parent=Phyra75533;rank=6 scaffold_13 . exon 306573 306728 . + . ID=Phyra75533.3;Parent=Phyra75533;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_13 . exon 306806 306900 . + . ID=Phyra75533.4;Parent=Phyra75533;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 . exon 307023 307266 . + . ID=Phyra75533.5;Parent=Phyra75533;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_13 . exon 307345 307553 . + . ID=Phyra75533.6;Parent=Phyra75533;constitutive=1;ensembl_phase=1;rank=6 scaffold_13 ensembl protein_coding_gene 309200 320421 . + . ID=Phyra94201;biotype=protein_coding;external_name=C_scaffold_13000054;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 309200 320421 . + . ID=Phyra94201;Parent=Phyra94201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 309200 310322 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=1 scaffold_13 . exon 309200 310322 . + . ID=Phyra94201.1;Parent=Phyra94201;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 310602 310959 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=2 scaffold_13 . exon 310602 310959 . + . ID=Phyra94201.2;Parent=Phyra94201;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_13 . CDS 311274 311411 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=3 scaffold_13 . exon 311274 311411 . + . ID=Phyra94201.3;Parent=Phyra94201;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_13 . CDS 311433 311684 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=4 scaffold_13 . exon 311433 311684 . + . ID=Phyra94201.4;Parent=Phyra94201;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_13 . CDS 311724 311952 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=5 scaffold_13 . exon 311724 311952 . + . ID=Phyra94201.5;Parent=Phyra94201;constitutive=1;ensembl_phase=2;rank=5 scaffold_13 . CDS 312157 313159 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=6 scaffold_13 . exon 312157 313159 . + . ID=Phyra94201.6;Parent=Phyra94201;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_13 . CDS 313578 314255 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=7 scaffold_13 . exon 313578 314255 . + . ID=Phyra94201.7;Parent=Phyra94201;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_13 . CDS 314358 314782 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=8 scaffold_13 . exon 314358 314782 . + . ID=Phyra94201.8;Parent=Phyra94201;constitutive=1;ensembl_phase=1;rank=8 scaffold_13 . CDS 314852 314945 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=9 scaffold_13 . exon 314852 314945 . + . ID=Phyra94201.9;Parent=Phyra94201;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_13 . CDS 315384 316079 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=10 scaffold_13 . exon 315384 316079 . + . ID=Phyra94201.10;Parent=Phyra94201;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_13 . CDS 316221 316313 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=11 scaffold_13 . CDS 316545 316613 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=12 scaffold_13 . CDS 316674 316916 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=13 scaffold_13 . CDS 317013 318352 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=14 scaffold_13 . CDS 318422 318463 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=15 scaffold_13 . CDS 318528 318662 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=16 scaffold_13 . CDS 318717 318878 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=17 scaffold_13 . CDS 319017 319181 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=18 scaffold_13 . CDS 319253 319373 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=19 scaffold_13 . CDS 319449 319548 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=20 scaffold_13 . CDS 319615 319722 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=21 scaffold_13 . CDS 319834 320056 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=22 scaffold_13 . CDS 320126 320318 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=23 scaffold_13 . CDS 320381 320421 . + 0 ID=Phyra94201;Parent=Phyra94201;rank=24 scaffold_13 . biological_region 318642 318646 0.999 - . logic_name=eponine scaffold_13 . biological_region 321983 321984 0.999 - . logic_name=eponine scaffold_13 . biological_region 322377 322379 0.999 - . logic_name=eponine scaffold_13 . biological_region 322432 322436 0.999 + . logic_name=eponine scaffold_13 . repeat_region 322824 322867 . ? . description=trf scaffold_13 . biological_region 323762 323764 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 321713 323677 . - . ID=Phyra40970;biotype=protein_coding;external_name=gwEuk.13.43.1;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 321713 323677 . - . ID=Phyra40970;Parent=Phyra40970;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 321713 321875 . - 0 ID=Phyra40970;Parent=Phyra40970;rank=7 scaffold_13 . exon 321713 321875 . - . ID=Phyra40970.7;Parent=Phyra40970;constitutive=1;ensembl_phase=2;rank=7 scaffold_13 . CDS 321960 322800 . - 0 ID=Phyra40970;Parent=Phyra40970;rank=6 scaffold_13 . exon 321960 322800 . - . ID=Phyra40970.6;Parent=Phyra40970;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_13 . CDS 322871 323003 . - 0 ID=Phyra40970;Parent=Phyra40970;rank=5 scaffold_13 . exon 322871 323003 . - . ID=Phyra40970.5;Parent=Phyra40970;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_13 . CDS 323172 323266 . - 0 ID=Phyra40970;Parent=Phyra40970;rank=4 scaffold_13 . exon 323172 323266 . - . ID=Phyra40970.4;Parent=Phyra40970;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 . CDS 323369 323429 . - 0 ID=Phyra40970;Parent=Phyra40970;rank=3 scaffold_13 . exon 323369 323429 . - . ID=Phyra40970.3;Parent=Phyra40970;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_13 . CDS 323501 323564 . - 0 ID=Phyra40970;Parent=Phyra40970;rank=2 scaffold_13 . exon 323501 323564 . - . ID=Phyra40970.2;Parent=Phyra40970;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 323607 323677 . - 0 ID=Phyra40970;Parent=Phyra40970;rank=1 scaffold_13 . exon 323607 323677 . - . ID=Phyra40970.1;Parent=Phyra40970;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 324061 326754 . - . ID=Phyra40975;biotype=protein_coding;external_name=gwEuk.13.48.1;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 324061 326754 . - . ID=Phyra40975;Parent=Phyra40975;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 324061 325914 . - 0 ID=Phyra40975;Parent=Phyra40975;rank=2 scaffold_13 . exon 324061 325914 . - . ID=Phyra40975.2;Parent=Phyra40975;constitutive=1;rank=2 scaffold_13 . CDS 325993 326754 . - 0 ID=Phyra40975;Parent=Phyra40975;rank=1 scaffold_13 . exon 316221 316313 . + . ID=Phyra94201.11;Parent=Phyra94201;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_13 . exon 316545 316613 . + . ID=Phyra94201.12;Parent=Phyra94201;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_13 . exon 316674 316916 . + . ID=Phyra94201.13;Parent=Phyra94201;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_13 . exon 317013 318352 . + . ID=Phyra94201.14;Parent=Phyra94201;constitutive=1;ensembl_phase=1;rank=14 scaffold_13 . exon 318422 318463 . + . ID=Phyra94201.15;Parent=Phyra94201;constitutive=1;rank=15 scaffold_13 . exon 318528 318662 . + . ID=Phyra94201.16;Parent=Phyra94201;constitutive=1;rank=16 scaffold_13 . exon 318717 318878 . + . ID=Phyra94201.17;Parent=Phyra94201;constitutive=1;rank=17 scaffold_13 . exon 319017 319181 . + . ID=Phyra94201.18;Parent=Phyra94201;constitutive=1;rank=18 scaffold_13 . exon 319253 319373 . + . ID=Phyra94201.19;Parent=Phyra94201;constitutive=1;ensembl_end_phase=1;rank=19 scaffold_13 . exon 319449 319548 . + . ID=Phyra94201.20;Parent=Phyra94201;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=20 scaffold_13 . exon 319615 319722 . + . ID=Phyra94201.21;Parent=Phyra94201;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=21 scaffold_13 . exon 319834 320056 . + . ID=Phyra94201.22;Parent=Phyra94201;constitutive=1;ensembl_phase=2;rank=22 scaffold_13 . exon 320126 320318 . + . ID=Phyra94201.23;Parent=Phyra94201;constitutive=1;ensembl_end_phase=1;rank=23 scaffold_13 . exon 320381 320421 . + . ID=Phyra94201.24;Parent=Phyra94201;constitutive=1;ensembl_phase=1;rank=24 scaffold_13 . exon 325993 326754 . - . ID=Phyra40975.1;Parent=Phyra40975;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 326979 327675 . + . ID=Phyra75537;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000103;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 326979 327675 . + . ID=Phyra75537;Parent=Phyra75537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 326979 327529 . + 0 ID=Phyra75537;Parent=Phyra75537;rank=1 scaffold_13 . exon 326979 327529 . + . ID=Phyra75537.1;Parent=Phyra75537;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 327657 327675 . + 0 ID=Phyra75537;Parent=Phyra75537;rank=2 scaffold_13 . exon 327657 327675 . + . ID=Phyra75537.2;Parent=Phyra75537;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 ensembl protein_coding_gene 328972 329800 . - . ID=Phyra75538;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000104;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 328972 329800 . - . ID=Phyra75538;Parent=Phyra75538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 328972 328995 . - 0 ID=Phyra75538;Parent=Phyra75538;rank=4 scaffold_13 . exon 328972 328995 . - . ID=Phyra75538.4;Parent=Phyra75538;constitutive=1;rank=4 scaffold_13 . CDS 329104 329193 . - 0 ID=Phyra75538;Parent=Phyra75538;rank=3 scaffold_13 . exon 329104 329193 . - . ID=Phyra75538.3;Parent=Phyra75538;constitutive=1;rank=3 scaffold_13 . CDS 329261 329338 . - 0 ID=Phyra75538;Parent=Phyra75538;rank=2 scaffold_13 . exon 329261 329338 . - . ID=Phyra75538.2;Parent=Phyra75538;constitutive=1;rank=2 scaffold_13 . CDS 329369 329800 . - 0 ID=Phyra75538;Parent=Phyra75538;rank=1 scaffold_13 . exon 329369 329800 . - . ID=Phyra75538.1;Parent=Phyra75538;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 330842 333657 . + . ID=Phyra94203;biotype=protein_coding;external_name=C_scaffold_13000056;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 330842 333657 . + . ID=Phyra94203;Parent=Phyra94203;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 330842 331858 . + 0 ID=Phyra94203;Parent=Phyra94203;rank=1 scaffold_13 . exon 330842 331858 . + . ID=Phyra94203.1;Parent=Phyra94203;constitutive=1;rank=1 scaffold_13 . CDS 331886 331987 . + 0 ID=Phyra94203;Parent=Phyra94203;rank=2 scaffold_13 . exon 331886 331987 . + . ID=Phyra94203.2;Parent=Phyra94203;constitutive=1;rank=2 scaffold_13 . CDS 332126 332179 . + 0 ID=Phyra94203;Parent=Phyra94203;rank=3 scaffold_13 . exon 332126 332179 . + . ID=Phyra94203.3;Parent=Phyra94203;constitutive=1;rank=3 scaffold_13 . CDS 332306 332661 . + 0 ID=Phyra94203;Parent=Phyra94203;rank=4 scaffold_13 . exon 332306 332661 . + . ID=Phyra94203.4;Parent=Phyra94203;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_13 . CDS 333000 333657 . + 0 ID=Phyra94203;Parent=Phyra94203;rank=5 scaffold_13 . exon 333000 333657 . + . ID=Phyra94203.5;Parent=Phyra94203;constitutive=1;ensembl_phase=2;rank=5 scaffold_13 ensembl protein_coding_gene 333906 334463 . - . ID=Phyra94206;biotype=protein_coding;external_name=C_scaffold_13000059;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 333906 334463 . - . ID=Phyra94206;Parent=Phyra94206;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 333906 334176 . - 0 ID=Phyra94206;Parent=Phyra94206;rank=2 scaffold_13 . exon 333906 334176 . - . ID=Phyra94206.2;Parent=Phyra94206;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 334231 334463 . - 0 ID=Phyra94206;Parent=Phyra94206;rank=1 scaffold_13 . exon 334231 334463 . - . ID=Phyra94206.1;Parent=Phyra94206;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . biological_region 341059 341059 0.999 + . logic_name=eponine scaffold_13 . biological_region 341080 341081 0.999 + . logic_name=eponine scaffold_13 . biological_region 341109 341111 0.999 + . logic_name=eponine scaffold_13 . biological_region 342085 342086 0.999 - . logic_name=eponine scaffold_13 . biological_region 342259 342263 0.999 - . logic_name=eponine scaffold_13 . biological_region 342600 342600 0.999 + . logic_name=eponine scaffold_13 . biological_region 342743 342744 0.999 + . logic_name=eponine scaffold_13 . biological_region 345331 345333 0.999 + . logic_name=eponine scaffold_13 . biological_region 345344 345349 0.999 - . logic_name=eponine scaffold_13 . biological_region 345484 345488 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 335828 336823 . + . ID=Phyra40980;biotype=protein_coding;external_name=gwEuk.13.53.1;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 335828 336823 . + . ID=Phyra40980;Parent=Phyra40980;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 335828 336823 . + 0 ID=Phyra40980;Parent=Phyra40980;rank=1 scaffold_13 . exon 335828 336823 . + . ID=Phyra40980.1;Parent=Phyra40980;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 343785 344753 . + . ID=Phyra40982;biotype=protein_coding;external_name=gwEuk.13.55.1;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 343785 344753 . + . ID=Phyra40982;Parent=Phyra40982;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 343785 344372 . + 0 ID=Phyra40982;Parent=Phyra40982;rank=1 scaffold_13 . exon 343785 344372 . + . ID=Phyra40982.1;Parent=Phyra40982;constitutive=1;rank=1 scaffold_13 . CDS 344442 344753 . + 0 ID=Phyra40982;Parent=Phyra40982;rank=2 scaffold_13 . exon 344442 344753 . + . ID=Phyra40982.2;Parent=Phyra40982;constitutive=1;rank=2 scaffold_13 ensembl protein_coding_gene 344953 345972 . - . ID=Phyra71324;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_13000014;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 344953 345972 . - . ID=Phyra71324;Parent=Phyra71324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 344953 345972 . - 0 ID=Phyra71324;Parent=Phyra71324;rank=1 scaffold_13 . exon 344953 345972 . - . ID=Phyra71324.1;Parent=Phyra71324;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 337041 341396 . - . ID=Phyra75543;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000109;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 337041 341396 . - . ID=Phyra75543;Parent=Phyra75543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 337041 341396 . - 0 ID=Phyra75543;Parent=Phyra75543;rank=1 scaffold_13 . exon 337041 341396 . - . ID=Phyra75543.1;Parent=Phyra75543;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 342001 342960 . + . ID=Phyra75544;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000110;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 342001 342960 . + . ID=Phyra75544;Parent=Phyra75544;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 342001 342728 . + 0 ID=Phyra75544;Parent=Phyra75544;rank=1 scaffold_13 . exon 342001 342728 . + . ID=Phyra75544.1;Parent=Phyra75544;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 342782 342857 . + 0 ID=Phyra75544;Parent=Phyra75544;rank=2 scaffold_13 . exon 342782 342857 . + . ID=Phyra75544.2;Parent=Phyra75544;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 342952 342960 . + 0 ID=Phyra75544;Parent=Phyra75544;rank=3 scaffold_13 . exon 342952 342960 . + . ID=Phyra75544.3;Parent=Phyra75544;constitutive=1;rank=3 scaffold_13 . repeat_region 352406 352455 . ? . description=dust scaffold_13 ensembl protein_coding_gene 346647 347597 . - . ID=Phyra75547;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000113;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 346647 347597 . - . ID=Phyra75547;Parent=Phyra75547;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 346647 347597 . - 0 ID=Phyra75547;Parent=Phyra75547;rank=1 scaffold_13 . exon 346647 347597 . - . ID=Phyra75547.1;Parent=Phyra75547;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 348563 350596 . - . ID=Phyra75548;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000114;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 348563 350596 . - . ID=Phyra75548;Parent=Phyra75548;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 348563 350596 . - 0 ID=Phyra75548;Parent=Phyra75548;rank=1 scaffold_13 . exon 348563 350596 . - . ID=Phyra75548.1;Parent=Phyra75548;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 352808 359858 . - . ID=Phyra75549;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000115;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 352808 359858 . - . ID=Phyra75549;Parent=Phyra75549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 352808 352831 . - 0 ID=Phyra75549;Parent=Phyra75549;rank=5 scaffold_13 . exon 352808 352831 . - . ID=Phyra75549.5;Parent=Phyra75549;constitutive=1;rank=5 scaffold_13 . CDS 352887 354179 . - 0 ID=Phyra75549;Parent=Phyra75549;rank=4 scaffold_13 . exon 352887 354179 . - . ID=Phyra75549.4;Parent=Phyra75549;constitutive=1;rank=4 scaffold_13 . CDS 354252 355995 . - 0 ID=Phyra75549;Parent=Phyra75549;rank=3 scaffold_13 . exon 354252 355995 . - . ID=Phyra75549.3;Parent=Phyra75549;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 356325 356790 . - 0 ID=Phyra75549;Parent=Phyra75549;rank=2 scaffold_13 . CDS 356861 359858 . - 0 ID=Phyra75549;Parent=Phyra75549;rank=1 scaffold_13 . repeat_region 357425 357461 . ? . description=trf scaffold_13 . repeat_region 357430 357462 . ? . description=trf scaffold_13 . biological_region 357965 357967 0.999 + . logic_name=eponine scaffold_13 . biological_region 360651 360655 0.999 - . logic_name=eponine scaffold_13 . biological_region 361573 361574 0.999 - . logic_name=eponine scaffold_13 . biological_region 362058 362064 0.999 + . logic_name=eponine scaffold_13 . biological_region 362089 362091 0.999 - . logic_name=eponine scaffold_13 . biological_region 365359 365359 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 365181 365931 . - . ID=Phyra40992;biotype=protein_coding;external_name=gwEuk.13.65.1;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 365181 365931 . - . ID=Phyra40992;Parent=Phyra40992;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 365181 365470 . - 0 ID=Phyra40992;Parent=Phyra40992;rank=2 scaffold_13 . exon 365181 365470 . - . ID=Phyra40992.2;Parent=Phyra40992;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 365550 365931 . - 0 ID=Phyra40992;Parent=Phyra40992;rank=1 scaffold_13 ensembl protein_coding_gene 360481 362553 . - . ID=Phyra71325;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_13000015;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 360481 362553 . - . ID=Phyra71325;Parent=Phyra71325;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 360481 362553 . - 0 ID=Phyra71325;Parent=Phyra71325;rank=1 scaffold_13 . exon 360481 362553 . - . ID=Phyra71325.1;Parent=Phyra71325;constitutive=1;rank=1 scaffold_13 . exon 356325 356790 . - . ID=Phyra75549.2;Parent=Phyra75549;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_13 . exon 356861 359858 . - . ID=Phyra75549.1;Parent=Phyra75549;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 362947 364902 . - . ID=Phyra75551;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000117;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 362947 364902 . - . ID=Phyra75551;Parent=Phyra75551;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 362947 364902 . - 0 ID=Phyra75551;Parent=Phyra75551;rank=1 scaffold_13 . exon 362947 364902 . - . ID=Phyra75551.1;Parent=Phyra75551;constitutive=1;rank=1 scaffold_13 . repeat_region 371464 371472 . ? . description=dust scaffold_13 . exon 365550 365931 . - . ID=Phyra40992.1;Parent=Phyra40992;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 369292 369573 . + . ID=Phyra40993;biotype=protein_coding;external_name=gwEuk.13.66.1;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 369292 369573 . + . ID=Phyra40993;Parent=Phyra40993;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 369292 369573 . + 0 ID=Phyra40993;Parent=Phyra40993;rank=1 scaffold_13 . exon 369292 369573 . + . ID=Phyra40993.1;Parent=Phyra40993;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 371703 374906 . - . ID=Phyra41000;biotype=protein_coding;external_name=gwEuk.13.73.1;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 371703 374906 . - . ID=Phyra41000;Parent=Phyra41000;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 371703 374906 . - 0 ID=Phyra41000;Parent=Phyra41000;rank=1 scaffold_13 . exon 371703 374906 . - . ID=Phyra41000.1;Parent=Phyra41000;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 366507 367496 . - . ID=Phyra75553;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000119;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 366507 367496 . - . ID=Phyra75553;Parent=Phyra75553;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 366507 366550 . - 0 ID=Phyra75553;Parent=Phyra75553;rank=5 scaffold_13 . exon 366507 366550 . - . ID=Phyra75553.5;Parent=Phyra75553;constitutive=1;ensembl_phase=1;rank=5 scaffold_13 . CDS 366617 366944 . - 0 ID=Phyra75553;Parent=Phyra75553;rank=4 scaffold_13 . exon 366617 366944 . - . ID=Phyra75553.4;Parent=Phyra75553;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_13 . CDS 367005 367082 . - 0 ID=Phyra75553;Parent=Phyra75553;rank=3 scaffold_13 . exon 367005 367082 . - . ID=Phyra75553.3;Parent=Phyra75553;constitutive=1;rank=3 scaffold_13 . CDS 367262 367349 . - 0 ID=Phyra75553;Parent=Phyra75553;rank=2 scaffold_13 . exon 367262 367349 . - . ID=Phyra75553.2;Parent=Phyra75553;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 367426 367496 . - 0 ID=Phyra75553;Parent=Phyra75553;rank=1 scaffold_13 . exon 367426 367496 . - . ID=Phyra75553.1;Parent=Phyra75553;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . biological_region 375518 375523 0.999 + . logic_name=eponine scaffold_13 . biological_region 375605 375608 0.999 - . logic_name=eponine scaffold_13 . repeat_region 375923 375967 . ? . description=trf scaffold_13 . biological_region 377407 377416 0.999 + . logic_name=eponine scaffold_13 . biological_region 380089 380090 0.999 + . logic_name=eponine scaffold_13 . biological_region 380926 380927 0.999 - . logic_name=eponine scaffold_13 . biological_region 383081 383088 0.999 - . logic_name=eponine scaffold_13 . biological_region 383106 383110 0.999 - . logic_name=eponine scaffold_13 . biological_region 383124 383131 0.999 - . logic_name=eponine scaffold_13 . biological_region 383125 383139 0.999 + . logic_name=eponine scaffold_13 . biological_region 383138 383141 0.999 - . logic_name=eponine scaffold_13 . biological_region 383164 383165 0.999 + . logic_name=eponine scaffold_13 . biological_region 383179 383184 0.999 + . logic_name=eponine scaffold_13 . biological_region 383216 383219 0.999 - . logic_name=eponine scaffold_13 . biological_region 383274 383276 0.999 + . logic_name=eponine scaffold_13 . biological_region 383595 383600 0.999 - . logic_name=eponine scaffold_13 . repeat_region 384940 387456 . ? . description=trf scaffold_13 ensembl protein_coding_gene 377243 378801 . + . ID=Phyra75555;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000121;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 377243 378801 . + . ID=Phyra75555;Parent=Phyra75555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 377243 377665 . + 0 ID=Phyra75555;Parent=Phyra75555;rank=1 scaffold_13 . exon 377243 377665 . + . ID=Phyra75555.1;Parent=Phyra75555;constitutive=1;rank=1 scaffold_13 . CDS 377754 377830 . + 0 ID=Phyra75555;Parent=Phyra75555;rank=2 scaffold_13 . exon 377754 377830 . + . ID=Phyra75555.2;Parent=Phyra75555;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_13 . CDS 377940 378801 . + 0 ID=Phyra75555;Parent=Phyra75555;rank=3 scaffold_13 . exon 377940 378801 . + . ID=Phyra75555.3;Parent=Phyra75555;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 ensembl protein_coding_gene 380055 381917 . + . ID=Phyra75556;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000122;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 380055 381917 . + . ID=Phyra75556;Parent=Phyra75556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 380055 381917 . + 0 ID=Phyra75556;Parent=Phyra75556;rank=1 scaffold_13 . exon 380055 381917 . + . ID=Phyra75556.1;Parent=Phyra75556;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 382266 383792 . - . ID=Phyra75557;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000123;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 382266 383792 . - . ID=Phyra75557;Parent=Phyra75557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 382266 383406 . - 0 ID=Phyra75557;Parent=Phyra75557;rank=2 scaffold_13 . exon 382266 383406 . - . ID=Phyra75557.2;Parent=Phyra75557;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 383629 383792 . - 0 ID=Phyra75557;Parent=Phyra75557;rank=1 scaffold_13 . exon 383629 383792 . - . ID=Phyra75557.1;Parent=Phyra75557;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 384032 387722 . - . ID=Phyra75558;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000124;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 384032 387722 . - . ID=Phyra75558;Parent=Phyra75558;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 384032 386506 . - 0 ID=Phyra75558;Parent=Phyra75558;rank=3 scaffold_13 . exon 384032 386506 . - . ID=Phyra75558.3;Parent=Phyra75558;constitutive=1;rank=3 scaffold_13 . CDS 386628 387490 . - 0 ID=Phyra75558;Parent=Phyra75558;rank=2 scaffold_13 . CDS 387692 387722 . - 0 ID=Phyra75558;Parent=Phyra75558;rank=1 scaffold_13 . exon 386628 387490 . - . ID=Phyra75558.2;Parent=Phyra75558;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . exon 387692 387722 . - . ID=Phyra75558.1;Parent=Phyra75558;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 394164 395512 . - . ID=Phyra75559;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000125;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 394164 395512 . - . ID=Phyra75559;Parent=Phyra75559;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 394164 394178 . - 0 ID=Phyra75559;Parent=Phyra75559;rank=3 scaffold_13 . exon 394164 394178 . - . ID=Phyra75559.3;Parent=Phyra75559;constitutive=1;rank=3 scaffold_13 . CDS 394457 394885 . - 0 ID=Phyra75559;Parent=Phyra75559;rank=2 scaffold_13 . exon 394457 394885 . - . ID=Phyra75559.2;Parent=Phyra75559;constitutive=1;rank=2 scaffold_13 . CDS 394970 395512 . - 0 ID=Phyra75559;Parent=Phyra75559;rank=1 scaffold_13 . exon 394970 395512 . - . ID=Phyra75559.1;Parent=Phyra75559;constitutive=1;rank=1 scaffold_13 . biological_region 395146 395150 0.999 - . logic_name=eponine scaffold_13 . biological_region 395396 395408 0.999 - . logic_name=eponine scaffold_13 . biological_region 395403 395409 0.999 + . logic_name=eponine scaffold_13 . biological_region 396827 396833 0.999 + . logic_name=eponine scaffold_13 . biological_region 396964 396969 0.999 - . logic_name=eponine scaffold_13 . repeat_region 397428 397435 . ? . description=dust scaffold_13 . biological_region 398325 398326 0.999 - . logic_name=eponine scaffold_13 . biological_region 401773 401776 0.999 + . logic_name=eponine scaffold_13 . biological_region 401894 401894 0.999 + . logic_name=eponine scaffold_13 . repeat_region 402385 402410 . ? . description=dust scaffold_13 . repeat_region 402387 402410 . ? . description=trf scaffold_13 . biological_region 403418 403419 0.999 + . logic_name=eponine scaffold_13 . repeat_region 404500 404549 . ? . description=dust scaffold_13 ensembl pseudogene 403208 403584 . - . ID=Phyra41014;biotype=pseudogene;external_name=gwEuk.13.87.1;logic_name=jgi_phyra1 scaffold_13 ensembl pseudogene 403208 403584 . - . ID=Phyra41014;Parent=Phyra41014;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_13 . exon 403208 403584 . - . ID=Phyra41014.1;Parent=Phyra41014;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 396504 397320 . + . ID=Phyra75560;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000126;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 396504 397320 . + . ID=Phyra75560;Parent=Phyra75560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 396504 397115 . + 0 ID=Phyra75560;Parent=Phyra75560;rank=1 scaffold_13 . exon 396504 397115 . + . ID=Phyra75560.1;Parent=Phyra75560;constitutive=1;rank=1 scaffold_13 . CDS 397189 397320 . + 0 ID=Phyra75560;Parent=Phyra75560;rank=2 scaffold_13 . exon 397189 397320 . + . ID=Phyra75560.2;Parent=Phyra75560;constitutive=1;rank=2 scaffold_13 ensembl protein_coding_gene 397504 402270 . - . ID=Phyra75561;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000127;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 397504 402270 . - . ID=Phyra75561;Parent=Phyra75561;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 397504 398387 . - 0 ID=Phyra75561;Parent=Phyra75561;rank=2 scaffold_13 . exon 397504 398387 . - . ID=Phyra75561.2;Parent=Phyra75561;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 398511 402270 . - 0 ID=Phyra75561;Parent=Phyra75561;rank=1 scaffold_13 . exon 398511 402270 . - . ID=Phyra75561.1;Parent=Phyra75561;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . repeat_region 410412 417648 . ? . description=dust scaffold_13 . repeat_region 418060 418110 . ? . description=dust scaffold_13 . biological_region 418273 418277 0.999 - . logic_name=eponine scaffold_13 . biological_region 418795 418797 0.999 + . logic_name=eponine scaffold_13 . biological_region 420836 420836 0.999 - . logic_name=eponine scaffold_13 . biological_region 421142 421146 0.999 - . logic_name=eponine scaffold_13 . biological_region 421571 421576 0.999 - . logic_name=eponine scaffold_13 . repeat_region 422626 422678 . ? . description=trf scaffold_13 ensembl protein_coding_gene 422365 423205 . - . ID=Phyra71327;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_13000017;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 422365 423205 . - . ID=Phyra71327;Parent=Phyra71327;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 422365 422473 . - 0 ID=Phyra71327;Parent=Phyra71327;rank=5 scaffold_13 . exon 422365 422473 . - . ID=Phyra71327.5;Parent=Phyra71327;constitutive=1;ensembl_phase=2;rank=5 scaffold_13 . CDS 422542 422604 . - 0 ID=Phyra71327;Parent=Phyra71327;rank=4 scaffold_13 . exon 422542 422604 . - . ID=Phyra71327.4;Parent=Phyra71327;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_13 . CDS 422702 422761 . - 0 ID=Phyra71327;Parent=Phyra71327;rank=3 scaffold_13 . exon 422702 422761 . - . ID=Phyra71327.3;Parent=Phyra71327;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_13 . CDS 422826 422917 . - 0 ID=Phyra71327;Parent=Phyra71327;rank=2 scaffold_13 . exon 422826 422917 . - . ID=Phyra71327.2;Parent=Phyra71327;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_13 . CDS 422987 423205 . - 0 ID=Phyra71327;Parent=Phyra71327;rank=1 scaffold_13 . exon 422987 423205 . - . ID=Phyra71327.1;Parent=Phyra71327;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 419129 422231 . + . ID=Phyra75562;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000128;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 419129 422231 . + . ID=Phyra75562;Parent=Phyra75562;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 419129 419228 . + 0 ID=Phyra75562;Parent=Phyra75562;rank=1 scaffold_13 . exon 419129 419228 . + . ID=Phyra75562.1;Parent=Phyra75562;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 419293 422231 . + 0 ID=Phyra75562;Parent=Phyra75562;rank=2 scaffold_13 . exon 419293 422231 . + . ID=Phyra75562.2;Parent=Phyra75562;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 ensembl protein_coding_gene 423335 424464 . + . ID=Phyra75564;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000130;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 423335 424464 . + . ID=Phyra75564;Parent=Phyra75564;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 423335 423880 . + 0 ID=Phyra75564;Parent=Phyra75564;rank=1 scaffold_13 . exon 423335 423880 . + . ID=Phyra75564.1;Parent=Phyra75564;constitutive=1;rank=1 scaffold_13 . CDS 423957 424214 . + 0 ID=Phyra75564;Parent=Phyra75564;rank=2 scaffold_13 . exon 423957 424214 . + . ID=Phyra75564.2;Parent=Phyra75564;constitutive=1;rank=2 scaffold_13 . CDS 424288 424464 . + 0 ID=Phyra75564;Parent=Phyra75564;rank=3 scaffold_13 . exon 424288 424464 . + . ID=Phyra75564.3;Parent=Phyra75564;constitutive=1;rank=3 scaffold_13 ensembl protein_coding_gene 424658 426094 . - . ID=Phyra75565;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000131;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 424658 426094 . - . ID=Phyra75565;Parent=Phyra75565;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 424658 426094 . - 0 ID=Phyra75565;Parent=Phyra75565;rank=1 scaffold_13 . exon 424658 426094 . - . ID=Phyra75565.1;Parent=Phyra75565;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 426828 429155 . - . ID=Phyra75566;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000132;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 426828 429155 . - . ID=Phyra75566;Parent=Phyra75566;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 426828 429155 . - 0 ID=Phyra75566;Parent=Phyra75566;rank=1 scaffold_13 . exon 426828 429155 . - . ID=Phyra75566.1;Parent=Phyra75566;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 429467 429808 . - . ID=Phyra75567;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000133;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 429467 429808 . - . ID=Phyra75567;Parent=Phyra75567;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 429467 429808 . - 0 ID=Phyra75567;Parent=Phyra75567;rank=1 scaffold_13 . exon 429467 429808 . - . ID=Phyra75567.1;Parent=Phyra75567;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 432600 432923 . + . ID=Phyra75568;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000134;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 432600 432923 . + . ID=Phyra75568;Parent=Phyra75568;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 432600 432923 . + 0 ID=Phyra75568;Parent=Phyra75568;rank=1 scaffold_13 . exon 432600 432923 . + . ID=Phyra75568.1;Parent=Phyra75568;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 434264 435556 . - . ID=Phyra75569;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000135;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 434264 435556 . - . ID=Phyra75569;Parent=Phyra75569;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 434264 435556 . - 0 ID=Phyra75569;Parent=Phyra75569;rank=1 scaffold_13 . exon 434264 435556 . - . ID=Phyra75569.1;Parent=Phyra75569;constitutive=1;rank=1 scaffold_13 . repeat_region 435831 435868 . ? . description=trf scaffold_13 . biological_region 436092 436098 0.999 + . logic_name=eponine scaffold_13 . biological_region 439242 439244 0.999 - . logic_name=eponine scaffold_13 . biological_region 443294 443298 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 435908 439900 . + . ID=Phyra75570;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000136;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 435908 439900 . + . ID=Phyra75570;Parent=Phyra75570;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 435908 439900 . + 0 ID=Phyra75570;Parent=Phyra75570;rank=1 scaffold_13 . exon 435908 439900 . + . ID=Phyra75570.1;Parent=Phyra75570;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 440758 443615 . + . ID=Phyra75571;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000137;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 440758 443615 . + . ID=Phyra75571;Parent=Phyra75571;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 440758 442068 . + 0 ID=Phyra75571;Parent=Phyra75571;rank=1 scaffold_13 . exon 440758 442068 . + . ID=Phyra75571.1;Parent=Phyra75571;constitutive=1;rank=1 scaffold_13 . CDS 442344 443615 . + 0 ID=Phyra75571;Parent=Phyra75571;rank=2 scaffold_13 . exon 442344 443615 . + . ID=Phyra75571.2;Parent=Phyra75571;constitutive=1;rank=2 scaffold_13 ensembl protein_coding_gene 443771 445165 . - . ID=Phyra75572;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000138;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 443771 445165 . - . ID=Phyra75572;Parent=Phyra75572;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 443771 445165 . - 0 ID=Phyra75572;Parent=Phyra75572;rank=1 scaffold_13 . exon 443771 445165 . - . ID=Phyra75572.1;Parent=Phyra75572;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 447558 448343 . + . ID=Phyra71328;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_13000018;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 447558 448343 . + . ID=Phyra71328;Parent=Phyra71328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 447558 447599 . + 0 ID=Phyra71328;Parent=Phyra71328;rank=1 scaffold_13 . exon 447558 447599 . + . ID=Phyra71328.1;Parent=Phyra71328;constitutive=1;rank=1 scaffold_13 . CDS 447648 448343 . + 0 ID=Phyra71328;Parent=Phyra71328;rank=2 scaffold_13 . exon 447648 448343 . + . ID=Phyra71328.2;Parent=Phyra71328;constitutive=1;rank=2 scaffold_13 ensembl protein_coding_gene 445569 447231 . + . ID=Phyra75573;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000139;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 445569 447231 . + . ID=Phyra75573;Parent=Phyra75573;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 445569 445760 . + 0 ID=Phyra75573;Parent=Phyra75573;rank=1 scaffold_13 . exon 445569 445760 . + . ID=Phyra75573.1;Parent=Phyra75573;constitutive=1;rank=1 scaffold_13 . CDS 445833 446012 . + 0 ID=Phyra75573;Parent=Phyra75573;rank=2 scaffold_13 . exon 445833 446012 . + . ID=Phyra75573.2;Parent=Phyra75573;constitutive=1;rank=2 scaffold_13 . CDS 446232 446578 . + 0 ID=Phyra75573;Parent=Phyra75573;rank=3 scaffold_13 . exon 446232 446578 . + . ID=Phyra75573.3;Parent=Phyra75573;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_13 . CDS 446657 446804 . + 0 ID=Phyra75573;Parent=Phyra75573;rank=4 scaffold_13 . exon 446657 446804 . + . ID=Phyra75573.4;Parent=Phyra75573;constitutive=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 446872 447231 . + 0 ID=Phyra75573;Parent=Phyra75573;rank=5 scaffold_13 . exon 446872 447231 . + . ID=Phyra75573.5;Parent=Phyra75573;constitutive=1;rank=5 scaffold_13 ensembl protein_coding_gene 448554 449615 . - . ID=Phyra75575;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000141;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 448554 449615 . - . ID=Phyra75575;Parent=Phyra75575;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 448554 449615 . - 0 ID=Phyra75575;Parent=Phyra75575;rank=1 scaffold_13 . exon 448554 449615 . - . ID=Phyra75575.1;Parent=Phyra75575;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 452839 455695 . + . ID=Phyra75576;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000142;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 452839 455695 . + . ID=Phyra75576;Parent=Phyra75576;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 452839 453911 . + 0 ID=Phyra75576;Parent=Phyra75576;rank=1 scaffold_13 . exon 452839 453911 . + . ID=Phyra75576.1;Parent=Phyra75576;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 454081 455695 . + 0 ID=Phyra75576;Parent=Phyra75576;rank=2 scaffold_13 . exon 454081 455695 . + . ID=Phyra75576.2;Parent=Phyra75576;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . biological_region 454373 454377 0.999 + . logic_name=eponine scaffold_13 . biological_region 454477 454480 0.999 - . logic_name=eponine scaffold_13 . biological_region 455032 455037 0.999 - . logic_name=eponine scaffold_13 . repeat_region 456159 456173 . ? . description=dust scaffold_13 . repeat_region 458722 458734 . ? . description=dust scaffold_13 . repeat_region 459210 459218 . ? . description=dust scaffold_13 . repeat_region 459304 459313 . ? . description=dust scaffold_13 . biological_region 461400 461404 0.999 - . logic_name=eponine scaffold_13 . biological_region 462009 462017 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 460374 463382 . + . ID=Phyra75577;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000143;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 460374 463382 . + . ID=Phyra75577;Parent=Phyra75577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 460374 463382 . + 0 ID=Phyra75577;Parent=Phyra75577;rank=1 scaffold_13 . exon 460374 463382 . + . ID=Phyra75577.1;Parent=Phyra75577;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 465763 467469 . + . ID=Phyra75578;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000144;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 465763 467469 . + . ID=Phyra75578;Parent=Phyra75578;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 465763 467469 . + 0 ID=Phyra75578;Parent=Phyra75578;rank=1 scaffold_13 . exon 465763 467469 . + . ID=Phyra75578.1;Parent=Phyra75578;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 468104 470287 . + . ID=Phyra75579;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000145;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 468104 470287 . + . ID=Phyra75579;Parent=Phyra75579;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 468104 470287 . + 0 ID=Phyra75579;Parent=Phyra75579;rank=1 scaffold_13 . exon 468104 470287 . + . ID=Phyra75579.1;Parent=Phyra75579;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 470440 471989 . - . ID=Phyra75580;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000146;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 470440 471989 . - . ID=Phyra75580;Parent=Phyra75580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 470440 471090 . - 0 ID=Phyra75580;Parent=Phyra75580;rank=4 scaffold_13 . exon 470440 471090 . - . ID=Phyra75580.4;Parent=Phyra75580;constitutive=1;rank=4 scaffold_13 . CDS 471155 471268 . - 0 ID=Phyra75580;Parent=Phyra75580;rank=3 scaffold_13 . exon 471155 471268 . - . ID=Phyra75580.3;Parent=Phyra75580;constitutive=1;rank=3 scaffold_13 . CDS 471335 471403 . - 0 ID=Phyra75580;Parent=Phyra75580;rank=2 scaffold_13 . exon 471335 471403 . - . ID=Phyra75580.2;Parent=Phyra75580;constitutive=1;rank=2 scaffold_13 . CDS 471474 471989 . - 0 ID=Phyra75580;Parent=Phyra75580;rank=1 scaffold_13 . exon 471474 471989 . - . ID=Phyra75580.1;Parent=Phyra75580;constitutive=1;rank=1 scaffold_13 . biological_region 475599 475604 0.999 + . logic_name=eponine scaffold_13 . biological_region 476426 476427 0.999 - . logic_name=eponine scaffold_13 . biological_region 477167 477175 0.999 + . logic_name=eponine scaffold_13 . biological_region 477182 477185 0.999 - . logic_name=eponine scaffold_13 . biological_region 477384 477386 0.999 + . logic_name=eponine scaffold_13 . repeat_region 477403 477437 . ? . description=trf scaffold_13 . biological_region 477421 477422 0.999 - . logic_name=eponine scaffold_13 . biological_region 479848 479853 0.999 + . logic_name=eponine scaffold_13 . biological_region 479960 479963 0.999 - . logic_name=eponine scaffold_13 . biological_region 479987 479990 0.999 - . logic_name=eponine scaffold_13 . biological_region 480042 480046 0.999 + . logic_name=eponine scaffold_13 . repeat_region 481409 481452 . ? . description=trf scaffold_13 . biological_region 481416 481420 0.999 - . logic_name=eponine scaffold_13 . biological_region 481484 481489 0.999 - . logic_name=eponine scaffold_13 . biological_region 482430 482432 0.999 + . logic_name=eponine scaffold_13 . biological_region 482479 482485 0.999 + . logic_name=eponine scaffold_13 . biological_region 482556 482559 0.999 - . logic_name=eponine scaffold_13 . biological_region 483586 483590 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 478498 480687 . + . ID=Phyra71329;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_13000019;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 478498 480687 . + . ID=Phyra71329;Parent=Phyra71329;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 478498 480687 . + 0 ID=Phyra71329;Parent=Phyra71329;rank=1 scaffold_13 . exon 478498 480687 . + . ID=Phyra71329.1;Parent=Phyra71329;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 475362 477488 . + . ID=Phyra75581;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000147;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 475362 477488 . + . ID=Phyra75581;Parent=Phyra75581;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 475362 477488 . + 0 ID=Phyra75581;Parent=Phyra75581;rank=1 scaffold_13 . exon 475362 477488 . + . ID=Phyra75581.1;Parent=Phyra75581;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 480941 483847 . - . ID=Phyra94214;biotype=protein_coding;external_name=C_scaffold_13000067;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 480941 483847 . - . ID=Phyra94214;Parent=Phyra94214;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 480941 481670 . - 0 ID=Phyra94214;Parent=Phyra94214;rank=5 scaffold_13 . exon 480941 481670 . - . ID=Phyra94214.5;Parent=Phyra94214;constitutive=1;ensembl_phase=2;rank=5 scaffold_13 . CDS 481843 482650 . - 0 ID=Phyra94214;Parent=Phyra94214;rank=4 scaffold_13 . exon 481843 482650 . - . ID=Phyra94214.4;Parent=Phyra94214;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_13 . CDS 482947 483314 . - 0 ID=Phyra94214;Parent=Phyra94214;rank=3 scaffold_13 . exon 482947 483314 . - . ID=Phyra94214.3;Parent=Phyra94214;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 483389 483528 . - 0 ID=Phyra94214;Parent=Phyra94214;rank=2 scaffold_13 . exon 483389 483528 . - . ID=Phyra94214.2;Parent=Phyra94214;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_13 . CDS 483587 483847 . - 0 ID=Phyra94214;Parent=Phyra94214;rank=1 scaffold_13 . exon 483587 483847 . - . ID=Phyra94214.1;Parent=Phyra94214;constitutive=1;rank=1 scaffold_13 . repeat_region 485485 485497 . ? . description=dust scaffold_13 . repeat_region 486916 486923 . ? . description=dust scaffold_13 . repeat_region 489603 494650 . ? . description=dust scaffold_13 ensembl protein_coding_gene 484398 485664 . + . ID=Phyra75584;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000150;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 484398 485664 . + . ID=Phyra75584;Parent=Phyra75584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 484398 484938 . + 0 ID=Phyra75584;Parent=Phyra75584;rank=1 scaffold_13 . exon 484398 484938 . + . ID=Phyra75584.1;Parent=Phyra75584;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 485169 485397 . + 0 ID=Phyra75584;Parent=Phyra75584;rank=2 scaffold_13 . exon 485169 485397 . + . ID=Phyra75584.2;Parent=Phyra75584;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_13 . CDS 485655 485664 . + 0 ID=Phyra75584;Parent=Phyra75584;rank=3 scaffold_13 . exon 485655 485664 . + . ID=Phyra75584.3;Parent=Phyra75584;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 . biological_region 495348 495351 0.999 + . logic_name=eponine scaffold_13 . biological_region 495533 495534 0.999 + . logic_name=eponine scaffold_13 . biological_region 500200 500201 0.999 + . logic_name=eponine scaffold_13 . biological_region 501759 501762 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 494789 496010 . - . ID=Phyra75585;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000151;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 494789 496010 . - . ID=Phyra75585;Parent=Phyra75585;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 494789 494800 . - 0 ID=Phyra75585;Parent=Phyra75585;rank=3 scaffold_13 . exon 494789 494800 . - . ID=Phyra75585.3;Parent=Phyra75585;constitutive=1;rank=3 scaffold_13 . CDS 494901 495034 . - 0 ID=Phyra75585;Parent=Phyra75585;rank=2 scaffold_13 . exon 494901 495034 . - . ID=Phyra75585.2;Parent=Phyra75585;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 495059 496010 . - 0 ID=Phyra75585;Parent=Phyra75585;rank=1 scaffold_13 . exon 495059 496010 . - . ID=Phyra75585.1;Parent=Phyra75585;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 501455 501949 . + . ID=Phyra75586;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000152;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 501455 501949 . + . ID=Phyra75586;Parent=Phyra75586;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 501455 501949 . + 0 ID=Phyra75586;Parent=Phyra75586;rank=1 scaffold_13 . exon 501455 501949 . + . ID=Phyra75586.1;Parent=Phyra75586;constitutive=1;rank=1 scaffold_13 . repeat_region 507119 507126 . ? . description=dust scaffold_13 . repeat_region 507419 507429 . ? . description=dust scaffold_13 . repeat_region 512198 512247 . ? . description=dust scaffold_13 . repeat_region 513034 513063 . ? . description=trf scaffold_13 . repeat_region 513329 513378 . ? . description=dust scaffold_13 ensembl protein_coding_gene 507926 510462 . + . ID=Phyra75587;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000153;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 507926 510462 . + . ID=Phyra75587;Parent=Phyra75587;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 507926 508178 . + 0 ID=Phyra75587;Parent=Phyra75587;rank=1 scaffold_13 . exon 507926 508178 . + . ID=Phyra75587.1;Parent=Phyra75587;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 509162 509740 . + 0 ID=Phyra75587;Parent=Phyra75587;rank=2 scaffold_13 . exon 509162 509740 . + . ID=Phyra75587.2;Parent=Phyra75587;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 509795 509812 . + 0 ID=Phyra75587;Parent=Phyra75587;rank=3 scaffold_13 . exon 509795 509812 . + . ID=Phyra75587.3;Parent=Phyra75587;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 509837 510462 . + 0 ID=Phyra75587;Parent=Phyra75587;rank=4 scaffold_13 . exon 509837 510462 . + . ID=Phyra75587.4;Parent=Phyra75587;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 ensembl protein_coding_gene 510681 512833 . - . ID=Phyra75588;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000154;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 510681 512833 . - . ID=Phyra75588;Parent=Phyra75588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 510681 512023 . - 0 ID=Phyra75588;Parent=Phyra75588;rank=2 scaffold_13 . exon 510681 512023 . - . ID=Phyra75588.2;Parent=Phyra75588;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 512281 512833 . - 0 ID=Phyra75588;Parent=Phyra75588;rank=1 scaffold_13 . exon 512281 512833 . - . ID=Phyra75588.1;Parent=Phyra75588;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . biological_region 513844 513845 0.999 + . logic_name=eponine scaffold_13 . biological_region 518087 518089 0.999 + . logic_name=eponine scaffold_13 . biological_region 520800 520800 0.999 + . logic_name=eponine scaffold_13 . biological_region 521690 521696 0.999 - . logic_name=eponine scaffold_13 . biological_region 521696 521700 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 515686 516587 . + . ID=Phyra75589;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000155;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 515686 516587 . + . ID=Phyra75589;Parent=Phyra75589;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 515686 515997 . + 0 ID=Phyra75589;Parent=Phyra75589;rank=1 scaffold_13 . exon 515686 515997 . + . ID=Phyra75589.1;Parent=Phyra75589;constitutive=1;rank=1 scaffold_13 . CDS 516067 516188 . + 0 ID=Phyra75589;Parent=Phyra75589;rank=2 scaffold_13 . exon 516067 516188 . + . ID=Phyra75589.2;Parent=Phyra75589;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_13 . CDS 516260 516587 . + 0 ID=Phyra75589;Parent=Phyra75589;rank=3 scaffold_13 . exon 516260 516587 . + . ID=Phyra75589.3;Parent=Phyra75589;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 ensembl protein_coding_gene 519408 523063 . + . ID=Phyra75590;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000156;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 519408 523063 . + . ID=Phyra75590;Parent=Phyra75590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 519408 521060 . + 0 ID=Phyra75590;Parent=Phyra75590;rank=1 scaffold_13 . exon 519408 521060 . + . ID=Phyra75590.1;Parent=Phyra75590;constitutive=1;rank=1 scaffold_13 . CDS 521210 523063 . + 0 ID=Phyra75590;Parent=Phyra75590;rank=2 scaffold_13 . exon 521210 523063 . + . ID=Phyra75590.2;Parent=Phyra75590;constitutive=1;rank=2 scaffold_13 . repeat_region 529756 529797 . ? . description=trf scaffold_13 ensembl protein_coding_gene 523546 528508 . - . ID=Phyra75591;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000157;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 523546 528508 . - . ID=Phyra75591;Parent=Phyra75591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 523546 523569 . - 0 ID=Phyra75591;Parent=Phyra75591;rank=5 scaffold_13 . exon 523546 523569 . - . ID=Phyra75591.5;Parent=Phyra75591;constitutive=1;rank=5 scaffold_13 . CDS 523652 524130 . - 0 ID=Phyra75591;Parent=Phyra75591;rank=4 scaffold_13 . exon 523652 524130 . - . ID=Phyra75591.4;Parent=Phyra75591;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 . CDS 524197 524329 . - 0 ID=Phyra75591;Parent=Phyra75591;rank=3 scaffold_13 . exon 524197 524329 . - . ID=Phyra75591.3;Parent=Phyra75591;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_13 . CDS 524393 526088 . - 0 ID=Phyra75591;Parent=Phyra75591;rank=2 scaffold_13 . exon 524393 526088 . - . ID=Phyra75591.2;Parent=Phyra75591;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 526116 528508 . - 0 ID=Phyra75591;Parent=Phyra75591;rank=1 scaffold_13 . exon 526116 528508 . - . ID=Phyra75591.1;Parent=Phyra75591;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 529978 530862 . + . ID=Phyra75592;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000158;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 529978 530862 . + . ID=Phyra75592;Parent=Phyra75592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 529978 530862 . + 0 ID=Phyra75592;Parent=Phyra75592;rank=1 scaffold_13 . exon 529978 530862 . + . ID=Phyra75592.1;Parent=Phyra75592;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 531127 534927 . - . ID=Phyra75593;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000159;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 531127 534927 . - . ID=Phyra75593;Parent=Phyra75593;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 531127 534927 . - 0 ID=Phyra75593;Parent=Phyra75593;rank=1 scaffold_13 . exon 531127 534927 . - . ID=Phyra75593.1;Parent=Phyra75593;constitutive=1;rank=1 scaffold_13 . biological_region 534806 534808 0.999 + . logic_name=eponine scaffold_13 . biological_region 534861 534864 0.999 + . logic_name=eponine scaffold_13 . biological_region 536071 536075 0.999 + . logic_name=eponine scaffold_13 . biological_region 539194 539197 0.999 - . logic_name=eponine scaffold_13 . biological_region 542059 542065 0.999 - . logic_name=eponine scaffold_13 . repeat_region 543039 543049 . ? . description=dust scaffold_13 ensembl protein_coding_gene 535195 537486 . + . ID=Phyra75594;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000160;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 535195 537486 . + . ID=Phyra75594;Parent=Phyra75594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 535195 537486 . + 0 ID=Phyra75594;Parent=Phyra75594;rank=1 scaffold_13 . exon 535195 537486 . + . ID=Phyra75594.1;Parent=Phyra75594;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 538983 539687 . + . ID=Phyra75595;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000161;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 538983 539687 . + . ID=Phyra75595;Parent=Phyra75595;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 538983 539687 . + 0 ID=Phyra75595;Parent=Phyra75595;rank=1 scaffold_13 . exon 538983 539687 . + . ID=Phyra75595.1;Parent=Phyra75595;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 540561 542234 . + . ID=Phyra75596;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000162;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 540561 542234 . + . ID=Phyra75596;Parent=Phyra75596;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 540561 542234 . + 0 ID=Phyra75596;Parent=Phyra75596;rank=1 scaffold_13 . exon 540561 542234 . + . ID=Phyra75596.1;Parent=Phyra75596;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 542596 543284 . - . ID=Phyra75597;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000163;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 542596 543284 . - . ID=Phyra75597;Parent=Phyra75597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 542596 543003 . - 0 ID=Phyra75597;Parent=Phyra75597;rank=2 scaffold_13 . exon 542596 543003 . - . ID=Phyra75597.2;Parent=Phyra75597;constitutive=1;rank=2 scaffold_13 . CDS 543123 543284 . - 0 ID=Phyra75597;Parent=Phyra75597;rank=1 scaffold_13 . exon 543123 543284 . - . ID=Phyra75597.1;Parent=Phyra75597;constitutive=1;rank=1 scaffold_13 . repeat_region 544407 544455 . ? . description=trf scaffold_13 ensembl protein_coding_gene 544829 546280 . + . ID=Phyra75598;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000164;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 544829 546280 . + . ID=Phyra75598;Parent=Phyra75598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 544829 546280 . + 0 ID=Phyra75598;Parent=Phyra75598;rank=1 scaffold_13 . exon 544829 546280 . + . ID=Phyra75598.1;Parent=Phyra75598;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 546642 548248 . - . ID=Phyra75599;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000165;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 546642 548248 . - . ID=Phyra75599;Parent=Phyra75599;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 546642 547049 . - 0 ID=Phyra75599;Parent=Phyra75599;rank=2 scaffold_13 . exon 546642 547049 . - . ID=Phyra75599.2;Parent=Phyra75599;constitutive=1;rank=2 scaffold_13 . CDS 547169 548248 . - 0 ID=Phyra75599;Parent=Phyra75599;rank=1 scaffold_13 . exon 547169 548248 . - . ID=Phyra75599.1;Parent=Phyra75599;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 550091 551365 . - . ID=Phyra75600;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000166;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 550091 551365 . - . ID=Phyra75600;Parent=Phyra75600;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 550091 550781 . - 0 ID=Phyra75600;Parent=Phyra75600;rank=3 scaffold_13 . exon 550091 550781 . - . ID=Phyra75600.3;Parent=Phyra75600;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 550857 551198 . - 0 ID=Phyra75600;Parent=Phyra75600;rank=2 scaffold_13 . exon 550857 551198 . - . ID=Phyra75600.2;Parent=Phyra75600;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_13 . CDS 551307 551365 . - 0 ID=Phyra75600;Parent=Phyra75600;rank=1 scaffold_13 . exon 551307 551365 . - . ID=Phyra75600.1;Parent=Phyra75600;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 551916 553467 . - . ID=Phyra75601;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000167;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 551916 553467 . - . ID=Phyra75601;Parent=Phyra75601;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 551916 552194 . - 0 ID=Phyra75601;Parent=Phyra75601;rank=6 scaffold_13 . exon 551916 552194 . - . ID=Phyra75601.6;Parent=Phyra75601;constitutive=1;rank=6 scaffold_13 . CDS 552319 552521 . - 0 ID=Phyra75601;Parent=Phyra75601;rank=5 scaffold_13 . exon 552319 552521 . - . ID=Phyra75601.5;Parent=Phyra75601;constitutive=1;ensembl_phase=1;rank=5 scaffold_13 . CDS 552597 552713 . - 0 ID=Phyra75601;Parent=Phyra75601;rank=4 scaffold_13 . exon 552597 552713 . - . ID=Phyra75601.4;Parent=Phyra75601;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_13 . CDS 552827 552955 . - 0 ID=Phyra75601;Parent=Phyra75601;rank=3 scaffold_13 . exon 552827 552955 . - . ID=Phyra75601.3;Parent=Phyra75601;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 553013 553075 . - 0 ID=Phyra75601;Parent=Phyra75601;rank=2 scaffold_13 . exon 553013 553075 . - . ID=Phyra75601.2;Parent=Phyra75601;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 553287 553467 . - 0 ID=Phyra75601;Parent=Phyra75601;rank=1 scaffold_13 . repeat_region 556066 556073 . ? . description=dust scaffold_13 . repeat_region 560253 560263 . ? . description=dust scaffold_13 . repeat_region 562442 562449 . ? . description=dust scaffold_13 . exon 553287 553467 . - . ID=Phyra75601.1;Parent=Phyra75601;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 557098 562003 . - . ID=Phyra75602;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000168;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 557098 562003 . - . ID=Phyra75602;Parent=Phyra75602;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 557098 558137 . - 0 ID=Phyra75602;Parent=Phyra75602;rank=7 scaffold_13 . exon 557098 558137 . - . ID=Phyra75602.7;Parent=Phyra75602;constitutive=1;ensembl_phase=1;rank=7 scaffold_13 . CDS 558468 560262 . - 0 ID=Phyra75602;Parent=Phyra75602;rank=6 scaffold_13 . exon 558468 560262 . - . ID=Phyra75602.6;Parent=Phyra75602;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_13 . CDS 560392 560938 . - 0 ID=Phyra75602;Parent=Phyra75602;rank=5 scaffold_13 . exon 560392 560938 . - . ID=Phyra75602.5;Parent=Phyra75602;constitutive=1;ensembl_phase=2;rank=5 scaffold_13 . CDS 561042 561217 . - 0 ID=Phyra75602;Parent=Phyra75602;rank=4 scaffold_13 . exon 561042 561217 . - . ID=Phyra75602.4;Parent=Phyra75602;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_13 . CDS 561332 561498 . - 0 ID=Phyra75602;Parent=Phyra75602;rank=3 scaffold_13 . exon 561332 561498 . - . ID=Phyra75602.3;Parent=Phyra75602;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 561657 561745 . - 0 ID=Phyra75602;Parent=Phyra75602;rank=2 scaffold_13 . exon 561657 561745 . - . ID=Phyra75602.2;Parent=Phyra75602;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 561858 562003 . - 0 ID=Phyra75602;Parent=Phyra75602;rank=1 scaffold_13 . exon 561858 562003 . - . ID=Phyra75602.1;Parent=Phyra75602;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 562745 563721 . + . ID=Phyra75603;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000169;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 562745 563721 . + . ID=Phyra75603;Parent=Phyra75603;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 562745 563239 . + 0 ID=Phyra75603;Parent=Phyra75603;rank=1 scaffold_13 . exon 562745 563239 . + . ID=Phyra75603.1;Parent=Phyra75603;constitutive=1;rank=1 scaffold_13 . CDS 563307 563550 . + 0 ID=Phyra75603;Parent=Phyra75603;rank=2 scaffold_13 . CDS 563621 563721 . + 0 ID=Phyra75603;Parent=Phyra75603;rank=3 scaffold_13 . biological_region 563073 563075 0.999 - . logic_name=eponine scaffold_13 . biological_region 568745 568749 0.999 - . logic_name=eponine scaffold_13 . biological_region 568933 568937 0.999 - . logic_name=eponine scaffold_13 . repeat_region 569931 569974 . ? . description=trf scaffold_13 . biological_region 570036 570038 0.999 + . logic_name=eponine scaffold_13 . biological_region 570071 570071 0.999 + . logic_name=eponine scaffold_13 . biological_region 570184 570188 0.999 - . logic_name=eponine scaffold_13 . biological_region 570242 570245 0.999 + . logic_name=eponine scaffold_13 . biological_region 570276 570277 0.999 - . logic_name=eponine scaffold_13 . biological_region 570296 570298 0.999 - . logic_name=eponine scaffold_13 . biological_region 570334 570334 0.999 + . logic_name=eponine scaffold_13 . biological_region 570357 570366 0.999 + . logic_name=eponine scaffold_13 . biological_region 570523 570532 0.999 - . logic_name=eponine scaffold_13 . biological_region 570560 570562 0.999 - . logic_name=eponine scaffold_13 . biological_region 570582 570586 0.999 + . logic_name=eponine scaffold_13 . repeat_region 571203 571262 . ? . description=trf scaffold_13 . repeat_region 571203 571271 . ? . description=trf scaffold_13 . repeat_region 571204 571268 . ? . description=trf scaffold_13 . repeat_region 571204 571271 . ? . description=trf scaffold_13 . repeat_region 571213 571271 . ? . description=trf scaffold_13 . repeat_region 571213 571273 . ? . description=trf scaffold_13 . repeat_region 571225 571289 . ? . description=trf scaffold_13 . exon 563307 563550 . + . ID=Phyra75603.2;Parent=Phyra75603;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_13 . exon 563621 563721 . + . ID=Phyra75603.3;Parent=Phyra75603;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 ensembl protein_coding_gene 566153 566665 . + . ID=Phyra75604;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000170;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 566153 566665 . + . ID=Phyra75604;Parent=Phyra75604;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 566153 566665 . + 0 ID=Phyra75604;Parent=Phyra75604;rank=1 scaffold_13 . exon 566153 566665 . + . ID=Phyra75604.1;Parent=Phyra75604;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 566750 568033 . - . ID=Phyra75605;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000171;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 566750 568033 . - . ID=Phyra75605;Parent=Phyra75605;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 566750 567035 . - 0 ID=Phyra75605;Parent=Phyra75605;rank=4 scaffold_13 . exon 566750 567035 . - . ID=Phyra75605.4;Parent=Phyra75605;constitutive=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 567104 567383 . - 0 ID=Phyra75605;Parent=Phyra75605;rank=3 scaffold_13 . exon 567104 567383 . - . ID=Phyra75605.3;Parent=Phyra75605;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_13 . CDS 567456 567598 . - 0 ID=Phyra75605;Parent=Phyra75605;rank=2 scaffold_13 . exon 567456 567598 . - . ID=Phyra75605.2;Parent=Phyra75605;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 567660 568033 . - 0 ID=Phyra75605;Parent=Phyra75605;rank=1 scaffold_13 . exon 567660 568033 . - . ID=Phyra75605.1;Parent=Phyra75605;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 568609 569532 . + . ID=Phyra75606;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000172;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 568609 569532 . + . ID=Phyra75606;Parent=Phyra75606;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 568609 569532 . + 0 ID=Phyra75606;Parent=Phyra75606;rank=1 scaffold_13 . exon 568609 569532 . + . ID=Phyra75606.1;Parent=Phyra75606;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 569647 570549 . - . ID=Phyra75607;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000173;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 569647 570549 . - . ID=Phyra75607;Parent=Phyra75607;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 569647 570549 . - 0 ID=Phyra75607;Parent=Phyra75607;rank=1 scaffold_13 . exon 569647 570549 . - . ID=Phyra75607.1;Parent=Phyra75607;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 570730 573715 . + . ID=Phyra75608;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000174;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 570730 573715 . + . ID=Phyra75608;Parent=Phyra75608;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 570730 570749 . + 0 ID=Phyra75608;Parent=Phyra75608;rank=1 scaffold_13 . exon 570730 570749 . + . ID=Phyra75608.1;Parent=Phyra75608;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 570810 571707 . + 0 ID=Phyra75608;Parent=Phyra75608;rank=2 scaffold_13 . exon 570810 571707 . + . ID=Phyra75608.2;Parent=Phyra75608;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 571786 572246 . + 0 ID=Phyra75608;Parent=Phyra75608;rank=3 scaffold_13 . exon 571786 572246 . + . ID=Phyra75608.3;Parent=Phyra75608;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_13 . CDS 572458 573337 . + 0 ID=Phyra75608;Parent=Phyra75608;rank=4 scaffold_13 . exon 572458 573337 . + . ID=Phyra75608.4;Parent=Phyra75608;constitutive=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 573410 573502 . + 0 ID=Phyra75608;Parent=Phyra75608;rank=5 scaffold_13 . CDS 573540 573715 . + 0 ID=Phyra75608;Parent=Phyra75608;rank=6 scaffold_13 . repeat_region 579874 579893 . ? . description=dust scaffold_13 ensembl protein_coding_gene 573837 576372 . + . ID=Phyra71330;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_13000020;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 573837 576372 . + . ID=Phyra71330;Parent=Phyra71330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 573837 574671 . + 0 ID=Phyra71330;Parent=Phyra71330;rank=1 scaffold_13 . exon 573837 574671 . + . ID=Phyra71330.1;Parent=Phyra71330;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 574740 574854 . + 0 ID=Phyra71330;Parent=Phyra71330;rank=2 scaffold_13 . exon 574740 574854 . + . ID=Phyra71330.2;Parent=Phyra71330;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_13 . CDS 574922 575075 . + 0 ID=Phyra71330;Parent=Phyra71330;rank=3 scaffold_13 . exon 574922 575075 . + . ID=Phyra71330.3;Parent=Phyra71330;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 575138 576063 . + 0 ID=Phyra71330;Parent=Phyra71330;rank=4 scaffold_13 . exon 575138 576063 . + . ID=Phyra71330.4;Parent=Phyra71330;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_13 . CDS 576129 576372 . + 0 ID=Phyra71330;Parent=Phyra71330;rank=5 scaffold_13 . exon 576129 576372 . + . ID=Phyra71330.5;Parent=Phyra71330;constitutive=1;ensembl_phase=2;rank=5 scaffold_13 ensembl protein_coding_gene 580126 581090 . + . ID=Phyra71331;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_13000021;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 580126 581090 . + . ID=Phyra71331;Parent=Phyra71331;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 580126 580237 . + 0 ID=Phyra71331;Parent=Phyra71331;rank=1 scaffold_13 . exon 580126 580237 . + . ID=Phyra71331.1;Parent=Phyra71331;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 580303 581090 . + 0 ID=Phyra71331;Parent=Phyra71331;rank=2 scaffold_13 . exon 580303 581090 . + . ID=Phyra71331.2;Parent=Phyra71331;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . exon 573410 573502 . + . ID=Phyra75608.5;Parent=Phyra75608;constitutive=1;rank=5 scaffold_13 . exon 573540 573715 . + . ID=Phyra75608.6;Parent=Phyra75608;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_13 ensembl protein_coding_gene 576629 579140 . - . ID=Phyra75610;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000176;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 576629 579140 . - . ID=Phyra75610;Parent=Phyra75610;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 576629 578515 . - 0 ID=Phyra75610;Parent=Phyra75610;rank=2 scaffold_13 . exon 576629 578515 . - . ID=Phyra75610.2;Parent=Phyra75610;constitutive=1;rank=2 scaffold_13 . CDS 578589 579140 . - 0 ID=Phyra75610;Parent=Phyra75610;rank=1 scaffold_13 . exon 578589 579140 . - . ID=Phyra75610.1;Parent=Phyra75610;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 582047 583182 . - . ID=Phyra94216;biotype=protein_coding;external_name=C_scaffold_13000069;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 582047 583182 . - . ID=Phyra94216;Parent=Phyra94216;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 582047 582094 . - 0 ID=Phyra94216;Parent=Phyra94216;rank=6 scaffold_13 . exon 582047 582094 . - . ID=Phyra94216.6;Parent=Phyra94216;constitutive=1;rank=6 scaffold_13 . CDS 582136 582194 . - 0 ID=Phyra94216;Parent=Phyra94216;rank=5 scaffold_13 . exon 582136 582194 . - . ID=Phyra94216.5;Parent=Phyra94216;constitutive=1;ensembl_phase=1;rank=5 scaffold_13 . CDS 582252 582711 . - 0 ID=Phyra94216;Parent=Phyra94216;rank=4 scaffold_13 . exon 582252 582711 . - . ID=Phyra94216.4;Parent=Phyra94216;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_13 . CDS 582733 582869 . - 0 ID=Phyra94216;Parent=Phyra94216;rank=3 scaffold_13 . exon 582733 582869 . - . ID=Phyra94216.3;Parent=Phyra94216;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 582922 583009 . - 0 ID=Phyra94216;Parent=Phyra94216;rank=2 scaffold_13 . CDS 583081 583182 . - 0 ID=Phyra94216;Parent=Phyra94216;rank=1 scaffold_13 . repeat_region 584590 584649 . ? . description=trf scaffold_13 . repeat_region 584745 585982 . ? . description=trf scaffold_13 . repeat_region 586003 586172 . ? . description=trf scaffold_13 . repeat_region 586149 586224 . ? . description=trf scaffold_13 . biological_region 586418 586423 0.999 + . logic_name=eponine scaffold_13 . biological_region 589915 589921 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 588685 589701 . + . ID=Phyra71332;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_13000022;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 588685 589701 . + . ID=Phyra71332;Parent=Phyra71332;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 588685 589701 . + 0 ID=Phyra71332;Parent=Phyra71332;rank=1 scaffold_13 . exon 588685 589701 . + . ID=Phyra71332.1;Parent=Phyra71332;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 584082 586550 . + . ID=Phyra75613;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000179;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 584082 586550 . + . ID=Phyra75613;Parent=Phyra75613;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 584082 586550 . + 0 ID=Phyra75613;Parent=Phyra75613;rank=1 scaffold_13 . exon 584082 586550 . + . ID=Phyra75613.1;Parent=Phyra75613;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 589809 591143 . - . ID=Phyra75616;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000182;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 589809 591143 . - . ID=Phyra75616;Parent=Phyra75616;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 589809 589958 . - 0 ID=Phyra75616;Parent=Phyra75616;rank=6 scaffold_13 . exon 589809 589958 . - . ID=Phyra75616.6;Parent=Phyra75616;constitutive=1;rank=6 scaffold_13 . CDS 590027 590234 . - 0 ID=Phyra75616;Parent=Phyra75616;rank=5 scaffold_13 . exon 590027 590234 . - . ID=Phyra75616.5;Parent=Phyra75616;constitutive=1;ensembl_phase=2;rank=5 scaffold_13 . CDS 590303 590586 . - 0 ID=Phyra75616;Parent=Phyra75616;rank=4 scaffold_13 . exon 590303 590586 . - . ID=Phyra75616.4;Parent=Phyra75616;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_13 . CDS 590660 590761 . - 0 ID=Phyra75616;Parent=Phyra75616;rank=3 scaffold_13 . exon 590660 590761 . - . ID=Phyra75616.3;Parent=Phyra75616;constitutive=1;rank=3 scaffold_13 . CDS 590835 591029 . - 0 ID=Phyra75616;Parent=Phyra75616;rank=2 scaffold_13 . exon 590835 591029 . - . ID=Phyra75616.2;Parent=Phyra75616;constitutive=1;rank=2 scaffold_13 . CDS 591096 591143 . - 0 ID=Phyra75616;Parent=Phyra75616;rank=1 scaffold_13 . exon 591096 591143 . - . ID=Phyra75616.1;Parent=Phyra75616;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 592281 593456 . + . ID=Phyra75617;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000183;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 592281 593456 . + . ID=Phyra75617;Parent=Phyra75617;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 592281 593456 . + 0 ID=Phyra75617;Parent=Phyra75617;rank=1 scaffold_13 . exon 592281 593456 . + . ID=Phyra75617.1;Parent=Phyra75617;constitutive=1;rank=1 scaffold_13 . exon 582922 583009 . - . ID=Phyra94216.2;Parent=Phyra94216;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_13 . exon 583081 583182 . - . ID=Phyra94216.1;Parent=Phyra94216;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 586793 588308 . + . ID=Phyra94217;biotype=protein_coding;external_name=C_scaffold_13000070;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 586793 588308 . + . ID=Phyra94217;Parent=Phyra94217;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 586793 587063 . + 0 ID=Phyra94217;Parent=Phyra94217;rank=1 scaffold_13 . exon 586793 587063 . + . ID=Phyra94217.1;Parent=Phyra94217;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 587135 587219 . + 0 ID=Phyra94217;Parent=Phyra94217;rank=2 scaffold_13 . exon 587135 587219 . + . ID=Phyra94217.2;Parent=Phyra94217;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_13 . CDS 587301 587362 . + 0 ID=Phyra94217;Parent=Phyra94217;rank=3 scaffold_13 . exon 587301 587362 . + . ID=Phyra94217.3;Parent=Phyra94217;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 587427 587623 . + 0 ID=Phyra94217;Parent=Phyra94217;rank=4 scaffold_13 . exon 587427 587623 . + . ID=Phyra94217.4;Parent=Phyra94217;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 . CDS 587690 587776 . + 0 ID=Phyra94217;Parent=Phyra94217;rank=5 scaffold_13 . exon 587690 587776 . + . ID=Phyra94217.5;Parent=Phyra94217;constitutive=1;rank=5 scaffold_13 . CDS 587849 587894 . + 0 ID=Phyra94217;Parent=Phyra94217;rank=6 scaffold_13 . exon 587849 587894 . + . ID=Phyra94217.6;Parent=Phyra94217;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_13 . CDS 587971 588007 . + 0 ID=Phyra94217;Parent=Phyra94217;rank=7 scaffold_13 . exon 587971 588007 . + . ID=Phyra94217.7;Parent=Phyra94217;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_13 . CDS 588098 588166 . + 0 ID=Phyra94217;Parent=Phyra94217;rank=8 scaffold_13 . exon 588098 588166 . + . ID=Phyra94217.8;Parent=Phyra94217;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_13 . CDS 588242 588308 . + 0 ID=Phyra94217;Parent=Phyra94217;rank=9 scaffold_13 . exon 588242 588308 . + . ID=Phyra94217.9;Parent=Phyra94217;constitutive=1;ensembl_phase=2;rank=9 scaffold_13 . repeat_region 601791 601806 . ? . description=dust scaffold_13 ensembl protein_coding_gene 593635 594837 . - . ID=Phyra75618;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000184;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 593635 594837 . - . ID=Phyra75618;Parent=Phyra75618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 593635 594837 . - 0 ID=Phyra75618;Parent=Phyra75618;rank=1 scaffold_13 . exon 593635 594837 . - . ID=Phyra75618.1;Parent=Phyra75618;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 595084 596396 . - . ID=Phyra75619;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000185;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 595084 596396 . - . ID=Phyra75619;Parent=Phyra75619;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 595084 596247 . - 0 ID=Phyra75619;Parent=Phyra75619;rank=2 scaffold_13 . exon 595084 596247 . - . ID=Phyra75619.2;Parent=Phyra75619;constitutive=1;rank=2 scaffold_13 . CDS 596307 596396 . - 0 ID=Phyra75619;Parent=Phyra75619;rank=1 scaffold_13 . exon 596307 596396 . - . ID=Phyra75619.1;Parent=Phyra75619;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 598725 598979 . + . ID=Phyra94219;biotype=protein_coding;external_name=C_scaffold_13000072;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 598725 598979 . + . ID=Phyra94219;Parent=Phyra94219;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 598725 598979 . + 0 ID=Phyra94219;Parent=Phyra94219;rank=1 scaffold_13 . exon 598725 598979 . + . ID=Phyra94219.1;Parent=Phyra94219;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 599170 601707 . - . ID=Phyra94220;biotype=protein_coding;external_name=C_scaffold_13000073;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 599170 601707 . - . ID=Phyra94220;Parent=Phyra94220;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 599170 599362 . - 0 ID=Phyra94220;Parent=Phyra94220;rank=8 scaffold_13 . exon 599170 599362 . - . ID=Phyra94220.8;Parent=Phyra94220;constitutive=1;ensembl_phase=2;rank=8 scaffold_13 . CDS 599430 599796 . - 0 ID=Phyra94220;Parent=Phyra94220;rank=7 scaffold_13 . exon 599430 599796 . - . ID=Phyra94220.7;Parent=Phyra94220;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_13 . CDS 599867 600098 . - 0 ID=Phyra94220;Parent=Phyra94220;rank=6 scaffold_13 . exon 599867 600098 . - . ID=Phyra94220.6;Parent=Phyra94220;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_13 . CDS 600158 600291 . - 0 ID=Phyra94220;Parent=Phyra94220;rank=5 scaffold_13 . exon 600158 600291 . - . ID=Phyra94220.5;Parent=Phyra94220;constitutive=1;ensembl_phase=1;rank=5 scaffold_13 . CDS 600366 600431 . - 0 ID=Phyra94220;Parent=Phyra94220;rank=4 scaffold_13 . exon 600366 600431 . - . ID=Phyra94220.4;Parent=Phyra94220;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_13 . CDS 600503 600560 . - 0 ID=Phyra94220;Parent=Phyra94220;rank=3 scaffold_13 . exon 600503 600560 . - . ID=Phyra94220.3;Parent=Phyra94220;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_13 . CDS 600646 601317 . - 0 ID=Phyra94220;Parent=Phyra94220;rank=2 scaffold_13 . exon 600646 601317 . - . ID=Phyra94220.2;Parent=Phyra94220;constitutive=1;rank=2 scaffold_13 . CDS 601339 601707 . - 0 ID=Phyra94220;Parent=Phyra94220;rank=1 scaffold_13 . exon 601339 601707 . - . ID=Phyra94220.1;Parent=Phyra94220;constitutive=1;rank=1 scaffold_13 . biological_region 603050 603051 0.999 - . logic_name=eponine scaffold_13 . biological_region 603105 603108 0.999 + . logic_name=eponine scaffold_13 . biological_region 603737 603742 0.999 + . logic_name=eponine scaffold_13 . biological_region 603756 603760 0.999 + . logic_name=eponine scaffold_13 . biological_region 603785 603788 0.999 + . logic_name=eponine scaffold_13 . biological_region 603837 603838 0.999 - . logic_name=eponine scaffold_13 . biological_region 603944 603946 0.999 + . logic_name=eponine scaffold_13 . repeat_region 609742 609831 . ? . description=trf scaffold_13 . biological_region 610009 610013 0.999 - . logic_name=eponine scaffold_13 . biological_region 611186 611192 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 607098 609363 . + . ID=Phyra75625;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000191;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 607098 609363 . + . ID=Phyra75625;Parent=Phyra75625;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 607098 607342 . + 0 ID=Phyra75625;Parent=Phyra75625;rank=1 scaffold_13 . exon 607098 607342 . + . ID=Phyra75625.1;Parent=Phyra75625;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 607407 607575 . + 0 ID=Phyra75625;Parent=Phyra75625;rank=2 scaffold_13 . exon 607407 607575 . + . ID=Phyra75625.2;Parent=Phyra75625;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 607632 607727 . + 0 ID=Phyra75625;Parent=Phyra75625;rank=3 scaffold_13 . exon 607632 607727 . + . ID=Phyra75625.3;Parent=Phyra75625;constitutive=1;rank=3 scaffold_13 . CDS 607798 608217 . + 0 ID=Phyra75625;Parent=Phyra75625;rank=4 scaffold_13 . exon 607798 608217 . + . ID=Phyra75625.4;Parent=Phyra75625;constitutive=1;rank=4 scaffold_13 . CDS 608295 608787 . + 0 ID=Phyra75625;Parent=Phyra75625;rank=5 scaffold_13 . exon 608295 608787 . + . ID=Phyra75625.5;Parent=Phyra75625;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_13 . CDS 609075 609199 . + 0 ID=Phyra75625;Parent=Phyra75625;rank=6 scaffold_13 . exon 609075 609199 . + . ID=Phyra75625.6;Parent=Phyra75625;constitutive=1;ensembl_phase=1;rank=6 scaffold_13 . CDS 609262 609363 . + 0 ID=Phyra75625;Parent=Phyra75625;rank=7 scaffold_13 . exon 609262 609363 . + . ID=Phyra75625.7;Parent=Phyra75625;constitutive=1;rank=7 scaffold_13 ensembl protein_coding_gene 609612 610648 . - . ID=Phyra75626;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000192;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 609612 610648 . - . ID=Phyra75626;Parent=Phyra75626;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 609612 609851 . - 0 ID=Phyra75626;Parent=Phyra75626;rank=3 scaffold_13 . exon 609612 609851 . - . ID=Phyra75626.3;Parent=Phyra75626;constitutive=1;rank=3 scaffold_13 . CDS 609925 610458 . - 0 ID=Phyra75626;Parent=Phyra75626;rank=2 scaffold_13 . exon 609925 610458 . - . ID=Phyra75626.2;Parent=Phyra75626;constitutive=1;rank=2 scaffold_13 . CDS 610544 610648 . - 0 ID=Phyra75626;Parent=Phyra75626;rank=1 scaffold_13 . exon 610544 610648 . - . ID=Phyra75626.1;Parent=Phyra75626;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 611046 611843 . - . ID=Phyra75627;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000193;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 611046 611843 . - . ID=Phyra75627;Parent=Phyra75627;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 611046 611843 . - 0 ID=Phyra75627;Parent=Phyra75627;rank=1 scaffold_13 . exon 611046 611843 . - . ID=Phyra75627.1;Parent=Phyra75627;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 612159 612485 . + . ID=Phyra75628;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000194;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 612159 612485 . + . ID=Phyra75628;Parent=Phyra75628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 612159 612485 . + 0 ID=Phyra75628;Parent=Phyra75628;rank=1 scaffold_13 . exon 612159 612485 . + . ID=Phyra75628.1;Parent=Phyra75628;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 602636 603250 . + . ID=Phyra94222;biotype=protein_coding;external_name=C_scaffold_13000075;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 602636 603250 . + . ID=Phyra94222;Parent=Phyra94222;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 602636 602791 . + 0 ID=Phyra94222;Parent=Phyra94222;rank=1 scaffold_13 . exon 602636 602791 . + . ID=Phyra94222.1;Parent=Phyra94222;constitutive=1;rank=1 scaffold_13 . CDS 602861 603250 . + 0 ID=Phyra94222;Parent=Phyra94222;rank=2 scaffold_13 . exon 602861 603250 . + . ID=Phyra94222.2;Parent=Phyra94222;constitutive=1;rank=2 scaffold_13 ensembl protein_coding_gene 603299 606816 . - . ID=Phyra94226;biotype=protein_coding;external_name=C_scaffold_13000079;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 603299 606816 . - . ID=Phyra94226;Parent=Phyra94226;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 603299 603506 . - 0 ID=Phyra94226;Parent=Phyra94226;rank=7 scaffold_13 . exon 603299 603506 . - . ID=Phyra94226.7;Parent=Phyra94226;constitutive=1;ensembl_phase=2;rank=7 scaffold_13 . CDS 603579 604038 . - 0 ID=Phyra94226;Parent=Phyra94226;rank=6 scaffold_13 . exon 603579 604038 . - . ID=Phyra94226.6;Parent=Phyra94226;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_13 . CDS 604180 604274 . - 0 ID=Phyra94226;Parent=Phyra94226;rank=5 scaffold_13 . exon 604180 604274 . - . ID=Phyra94226.5;Parent=Phyra94226;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_13 . CDS 604347 604511 . - 0 ID=Phyra94226;Parent=Phyra94226;rank=4 scaffold_13 . exon 604347 604511 . - . ID=Phyra94226.4;Parent=Phyra94226;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_13 . CDS 604577 605309 . - 0 ID=Phyra94226;Parent=Phyra94226;rank=3 scaffold_13 . exon 604577 605309 . - . ID=Phyra94226.3;Parent=Phyra94226;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_13 . CDS 605433 606243 . - 0 ID=Phyra94226;Parent=Phyra94226;rank=2 scaffold_13 . exon 605433 606243 . - . ID=Phyra94226.2;Parent=Phyra94226;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_13 . CDS 606289 606816 . - 0 ID=Phyra94226;Parent=Phyra94226;rank=1 scaffold_13 . exon 606289 606816 . - . ID=Phyra94226.1;Parent=Phyra94226;constitutive=1;rank=1 scaffold_13 . repeat_region 616987 617046 . ? . description=dust scaffold_13 ensembl protein_coding_gene 613036 613833 . + . ID=Phyra75629;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000195;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 613036 613833 . + . ID=Phyra75629;Parent=Phyra75629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 613036 613833 . + 0 ID=Phyra75629;Parent=Phyra75629;rank=1 scaffold_13 . exon 613036 613833 . + . ID=Phyra75629.1;Parent=Phyra75629;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 614326 615478 . + . ID=Phyra75630;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000196;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 614326 615478 . + . ID=Phyra75630;Parent=Phyra75630;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 614326 614469 . + 0 ID=Phyra75630;Parent=Phyra75630;rank=1 scaffold_13 . exon 614326 614469 . + . ID=Phyra75630.1;Parent=Phyra75630;constitutive=1;rank=1 scaffold_13 . CDS 614537 615044 . + 0 ID=Phyra75630;Parent=Phyra75630;rank=2 scaffold_13 . exon 614537 615044 . + . ID=Phyra75630.2;Parent=Phyra75630;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_13 . CDS 615111 615478 . + 0 ID=Phyra75630;Parent=Phyra75630;rank=3 scaffold_13 . exon 615111 615478 . + . ID=Phyra75630.3;Parent=Phyra75630;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 ensembl protein_coding_gene 615610 616146 . - . ID=Phyra75631;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000197;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 615610 616146 . - . ID=Phyra75631;Parent=Phyra75631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 615610 616146 . - 0 ID=Phyra75631;Parent=Phyra75631;rank=1 scaffold_13 . exon 615610 616146 . - . ID=Phyra75631.1;Parent=Phyra75631;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 616366 617331 . + . ID=Phyra75632;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000198;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 616366 617331 . + . ID=Phyra75632;Parent=Phyra75632;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 616366 617331 . + 0 ID=Phyra75632;Parent=Phyra75632;rank=1 scaffold_13 . exon 616366 617331 . + . ID=Phyra75632.1;Parent=Phyra75632;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 617656 622285 . + . ID=Phyra75633;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000199;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 617656 622285 . + . ID=Phyra75633;Parent=Phyra75633;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 617656 620109 . + 0 ID=Phyra75633;Parent=Phyra75633;rank=1 scaffold_13 . exon 617656 620109 . + . ID=Phyra75633.1;Parent=Phyra75633;constitutive=1;rank=1 scaffold_13 . CDS 620164 622063 . + 0 ID=Phyra75633;Parent=Phyra75633;rank=2 scaffold_13 . exon 620164 622063 . + . ID=Phyra75633.2;Parent=Phyra75633;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_13 . CDS 622095 622285 . + 0 ID=Phyra75633;Parent=Phyra75633;rank=3 scaffold_13 . exon 622095 622285 . + . ID=Phyra75633.3;Parent=Phyra75633;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . repeat_region 623819 623866 . ? . description=trf scaffold_13 . repeat_region 623826 623860 . ? . description=trf scaffold_13 . biological_region 625061 625063 0.999 - . logic_name=eponine scaffold_13 . biological_region 625741 625743 0.999 - . logic_name=eponine scaffold_13 . repeat_region 625947 626006 . ? . description=trf scaffold_13 . biological_region 627790 627792 0.999 + . logic_name=eponine scaffold_13 . biological_region 628367 628373 0.999 - . logic_name=eponine scaffold_13 . biological_region 628387 628391 0.999 - . logic_name=eponine scaffold_13 . biological_region 628586 628591 0.999 + . logic_name=eponine scaffold_13 . repeat_region 628764 628819 . ? . description=trf scaffold_13 . repeat_region 629923 629968 . ? . description=trf scaffold_13 ensembl protein_coding_gene 626000 627304 . + . ID=Phyra41083;biotype=protein_coding;external_name=gwEuk.13.156.1;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 626000 627304 . + . ID=Phyra41083;Parent=Phyra41083;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 626000 627304 . + 0 ID=Phyra41083;Parent=Phyra41083;rank=1 scaffold_13 . exon 626000 627304 . + . ID=Phyra41083.1;Parent=Phyra41083;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 627624 628753 . - . ID=Phyra71335;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_13000025;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 627624 628753 . - . ID=Phyra71335;Parent=Phyra71335;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 627624 628083 . - 0 ID=Phyra71335;Parent=Phyra71335;rank=2 scaffold_13 . exon 627624 628083 . - . ID=Phyra71335.2;Parent=Phyra71335;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 628152 628753 . - 0 ID=Phyra71335;Parent=Phyra71335;rank=1 scaffold_13 . exon 628152 628753 . - . ID=Phyra71335.1;Parent=Phyra71335;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 623069 625315 . - . ID=Phyra75634;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000200;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 623069 625315 . - . ID=Phyra75634;Parent=Phyra75634;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 623069 625315 . - 0 ID=Phyra75634;Parent=Phyra75634;rank=1 scaffold_13 . exon 623069 625315 . - . ID=Phyra75634.1;Parent=Phyra75634;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 629300 630218 . + . ID=Phyra75637;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000203;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 629300 630218 . + . ID=Phyra75637;Parent=Phyra75637;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 629300 629386 . + 0 ID=Phyra75637;Parent=Phyra75637;rank=1 scaffold_13 . exon 629300 629386 . + . ID=Phyra75637.1;Parent=Phyra75637;constitutive=1;rank=1 scaffold_13 . CDS 629456 629999 . + 0 ID=Phyra75637;Parent=Phyra75637;rank=2 scaffold_13 . exon 629456 629999 . + . ID=Phyra75637.2;Parent=Phyra75637;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_13 . CDS 630025 630218 . + 0 ID=Phyra75637;Parent=Phyra75637;rank=3 scaffold_13 . exon 630025 630218 . + . ID=Phyra75637.3;Parent=Phyra75637;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 ensembl tRNA_gene 641454 641525 . - . ID=EPrPRAG00000000054;biotype=tRNA;description=tRNA-Asp for anticodon GUC [Source:TRNASCAN_SE%3BAcc:tRNA-Asp];external_name=tRNA-Asp;logic_name=ncrna_eg scaffold_13 ensembl transcript 641454 641525 . - . ID=EPrPRAT00000000054;Parent=EPrPRAG00000000054;biotype=tRNA;logic_name=ncrna_eg scaffold_13 ensembl tRNA_gene 640891 640962 . - . ID=EPrPRAG00000000149;biotype=tRNA;description=tRNA-Asp for anticodon GUC [Source:TRNASCAN_SE%3BAcc:tRNA-Asp];external_name=tRNA-Asp;logic_name=ncrna_eg scaffold_13 ensembl transcript 640891 640962 . - . ID=EPrPRAT00000000149;Parent=EPrPRAG00000000149;biotype=tRNA;logic_name=ncrna_eg scaffold_13 . exon 641454 641525 . - . ID=EPrPRAE00000000054;Parent=EPrPRAT00000000054;constitutive=1;rank=1 scaffold_13 . exon 640891 640962 . - . ID=EPrPRAE00000000149;Parent=EPrPRAT00000000149;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 638507 639362 . - . ID=Phyra75638;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_13000204;logic_name=jgi_phyra1 scaffold_13 ensembl transcript 638507 639362 . - . ID=Phyra75638;Parent=Phyra75638;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_13 . CDS 638507 638548 . - 0 ID=Phyra75638;Parent=Phyra75638;rank=3 scaffold_13 . exon 638507 638548 . - . ID=Phyra75638.3;Parent=Phyra75638;constitutive=1;rank=3 scaffold_13 . CDS 638580 638792 . - 0 ID=Phyra75638;Parent=Phyra75638;rank=2 scaffold_13 . exon 638580 638792 . - . ID=Phyra75638.2;Parent=Phyra75638;constitutive=1;rank=2 scaffold_13 . CDS 638871 639362 . - 0 ID=Phyra75638;Parent=Phyra75638;rank=1 scaffold_13 . exon 638871 639362 . - . ID=Phyra75638.1;Parent=Phyra75638;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_15 1 655381 scaffold_15 . repeat_region 3227 8329 . ? . description=dust scaffold_15 . biological_region 9337 9338 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 19 1627 . + . ID=Phyra75867;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000001;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 19 1627 . + . ID=Phyra75867;Parent=Phyra75867;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 19 571 . + 0 ID=Phyra75867;Parent=Phyra75867;rank=1 scaffold_15 . exon 19 571 . + . ID=Phyra75867.1;Parent=Phyra75867;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 1042 1352 . + 0 ID=Phyra75867;Parent=Phyra75867;rank=2 scaffold_15 . exon 1042 1352 . + . ID=Phyra75867.2;Parent=Phyra75867;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 1430 1627 . + 0 ID=Phyra75867;Parent=Phyra75867;rank=3 scaffold_15 . exon 1430 1627 . + . ID=Phyra75867.3;Parent=Phyra75867;constitutive=1;rank=3 scaffold_15 . repeat_region 13610 13725 . ? . description=trf scaffold_15 . repeat_region 21975 21992 . ? . description=dust scaffold_15 . repeat_region 22091 23279 . ? . description=dust scaffold_15 . biological_region 26649 26653 0.999 + . logic_name=eponine scaffold_15 . biological_region 27264 27266 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 23830 26001 . - . ID=Phyra75868;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000002;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 23830 26001 . - . ID=Phyra75868;Parent=Phyra75868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 23830 23885 . - 0 ID=Phyra75868;Parent=Phyra75868;rank=4 scaffold_15 . exon 23830 23885 . - . ID=Phyra75868.4;Parent=Phyra75868;constitutive=1;ensembl_phase=1;rank=4 scaffold_15 . CDS 23923 24920 . - 0 ID=Phyra75868;Parent=Phyra75868;rank=3 scaffold_15 . exon 23923 24920 . - . ID=Phyra75868.3;Parent=Phyra75868;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_15 . CDS 25436 25776 . - 0 ID=Phyra75868;Parent=Phyra75868;rank=2 scaffold_15 . exon 25436 25776 . - . ID=Phyra75868.2;Parent=Phyra75868;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_15 . CDS 25843 26001 . - 0 ID=Phyra75868;Parent=Phyra75868;rank=1 scaffold_15 . exon 25843 26001 . - . ID=Phyra75868.1;Parent=Phyra75868;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 27109 28154 . - . ID=Phyra75869;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000003;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 27109 28154 . - . ID=Phyra75869;Parent=Phyra75869;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 27109 27908 . - 0 ID=Phyra75869;Parent=Phyra75869;rank=3 scaffold_15 . exon 27109 27908 . - . ID=Phyra75869.3;Parent=Phyra75869;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 27962 28055 . - 0 ID=Phyra75869;Parent=Phyra75869;rank=2 scaffold_15 . exon 27962 28055 . - . ID=Phyra75869.2;Parent=Phyra75869;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_15 . CDS 28122 28154 . - 0 ID=Phyra75869;Parent=Phyra75869;rank=1 scaffold_15 . exon 28122 28154 . - . ID=Phyra75869.1;Parent=Phyra75869;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 30067 30741 . - . ID=Phyra75870;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000004;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 30067 30741 . - . ID=Phyra75870;Parent=Phyra75870;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 30067 30741 . - 0 ID=Phyra75870;Parent=Phyra75870;rank=1 scaffold_15 . exon 30067 30741 . - . ID=Phyra75870.1;Parent=Phyra75870;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 34783 35457 . - . ID=Phyra75871;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000005;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 34783 35457 . - . ID=Phyra75871;Parent=Phyra75871;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 34783 35457 . - 0 ID=Phyra75871;Parent=Phyra75871;rank=1 scaffold_15 . exon 34783 35457 . - . ID=Phyra75871.1;Parent=Phyra75871;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 38469 39914 . - . ID=Phyra75872;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000006;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 38469 39914 . - . ID=Phyra75872;Parent=Phyra75872;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 38469 38486 . - 0 ID=Phyra75872;Parent=Phyra75872;rank=3 scaffold_15 . exon 38469 38486 . - . ID=Phyra75872.3;Parent=Phyra75872;constitutive=1;rank=3 scaffold_15 . CDS 38534 39466 . - 0 ID=Phyra75872;Parent=Phyra75872;rank=2 scaffold_15 . exon 38534 39466 . - . ID=Phyra75872.2;Parent=Phyra75872;constitutive=1;rank=2 scaffold_15 . CDS 39699 39914 . - 0 ID=Phyra75872;Parent=Phyra75872;rank=1 scaffold_15 . exon 39699 39914 . - . ID=Phyra75872.1;Parent=Phyra75872;constitutive=1;rank=1 scaffold_15 . biological_region 45407 45411 0.999 - . logic_name=eponine scaffold_15 . biological_region 49383 49383 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 47256 47945 . - . ID=Phyra42093;biotype=protein_coding;external_name=gwEuk.15.135.1;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 47256 47945 . - . ID=Phyra42093;Parent=Phyra42093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 47256 47574 . - 0 ID=Phyra42093;Parent=Phyra42093;rank=3 scaffold_15 . exon 47256 47574 . - . ID=Phyra42093.3;Parent=Phyra42093;constitutive=1;ensembl_phase=2;rank=3 scaffold_15 . CDS 47648 47681 . - 0 ID=Phyra42093;Parent=Phyra42093;rank=2 scaffold_15 . exon 47648 47681 . - . ID=Phyra42093.2;Parent=Phyra42093;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_15 . CDS 47747 47945 . - 0 ID=Phyra42093;Parent=Phyra42093;rank=1 scaffold_15 . exon 47747 47945 . - . ID=Phyra42093.1;Parent=Phyra42093;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 40317 41093 . + . ID=Phyra75873;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000007;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 40317 41093 . + . ID=Phyra75873;Parent=Phyra75873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 40317 40374 . + 0 ID=Phyra75873;Parent=Phyra75873;rank=1 scaffold_15 . exon 40317 40374 . + . ID=Phyra75873.1;Parent=Phyra75873;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 40501 41093 . + 0 ID=Phyra75873;Parent=Phyra75873;rank=2 scaffold_15 . exon 40501 41093 . + . ID=Phyra75873.2;Parent=Phyra75873;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 ensembl protein_coding_gene 44806 45684 . - . ID=Phyra75874;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000008;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 44806 45684 . - . ID=Phyra75874;Parent=Phyra75874;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 44806 44854 . - 0 ID=Phyra75874;Parent=Phyra75874;rank=3 scaffold_15 . exon 44806 44854 . - . ID=Phyra75874.3;Parent=Phyra75874;constitutive=1;ensembl_phase=2;rank=3 scaffold_15 . CDS 45025 45270 . - 0 ID=Phyra75874;Parent=Phyra75874;rank=2 scaffold_15 . exon 45025 45270 . - . ID=Phyra75874.2;Parent=Phyra75874;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_15 . CDS 45314 45684 . - 0 ID=Phyra75874;Parent=Phyra75874;rank=1 scaffold_15 . exon 45314 45684 . - . ID=Phyra75874.1;Parent=Phyra75874;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 49579 50265 . + . ID=Phyra75876;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000010;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 49579 50265 . + . ID=Phyra75876;Parent=Phyra75876;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 49579 50265 . + 0 ID=Phyra75876;Parent=Phyra75876;rank=1 scaffold_15 . exon 49579 50265 . + . ID=Phyra75876.1;Parent=Phyra75876;constitutive=1;rank=1 scaffold_15 . repeat_region 55033 55040 . ? . description=dust scaffold_15 . repeat_region 59277 59284 . ? . description=dust scaffold_15 ensembl protein_coding_gene 56163 57383 . + . ID=Phyra75877;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000011;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 56163 57383 . + . ID=Phyra75877;Parent=Phyra75877;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 56163 57383 . + 0 ID=Phyra75877;Parent=Phyra75877;rank=1 scaffold_15 . exon 56163 57383 . + . ID=Phyra75877.1;Parent=Phyra75877;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 58125 59003 . - . ID=Phyra75878;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000012;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 58125 59003 . - . ID=Phyra75878;Parent=Phyra75878;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 58125 58313 . - 0 ID=Phyra75878;Parent=Phyra75878;rank=5 scaffold_15 . exon 58125 58313 . - . ID=Phyra75878.5;Parent=Phyra75878;constitutive=1;rank=5 scaffold_15 . CDS 58349 58581 . - 0 ID=Phyra75878;Parent=Phyra75878;rank=4 scaffold_15 . exon 58349 58581 . - . ID=Phyra75878.4;Parent=Phyra75878;constitutive=1;ensembl_phase=1;rank=4 scaffold_15 . CDS 58638 58701 . - 0 ID=Phyra75878;Parent=Phyra75878;rank=3 scaffold_15 . exon 58638 58701 . - . ID=Phyra75878.3;Parent=Phyra75878;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . CDS 58804 58962 . - 0 ID=Phyra75878;Parent=Phyra75878;rank=2 scaffold_15 . exon 58804 58962 . - . ID=Phyra75878.2;Parent=Phyra75878;constitutive=1;rank=2 scaffold_15 . CDS 59001 59003 . - 0 ID=Phyra75878;Parent=Phyra75878;rank=1 scaffold_15 . exon 59001 59003 . - . ID=Phyra75878.1;Parent=Phyra75878;constitutive=1;rank=1 scaffold_15 . repeat_region 59961 60056 . - . description=Polinton-1_PI scaffold_15 . repeat_region 60134 60409 . + . description=Polinton-1_PI scaffold_15 . repeat_region 60568 60604 . + . description=Polinton-1_PI scaffold_15 . repeat_region 62082 72059 . + . description=Polinton-1_PI scaffold_15 ensembl protein_coding_gene 60251 61488 . + . ID=Phyra75879;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000013;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 60251 61488 . + . ID=Phyra75879;Parent=Phyra75879;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 60251 61424 . + 0 ID=Phyra75879;Parent=Phyra75879;rank=1 scaffold_15 . exon 60251 61424 . + . ID=Phyra75879.1;Parent=Phyra75879;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 61475 61488 . + 0 ID=Phyra75879;Parent=Phyra75879;rank=2 scaffold_15 . exon 61475 61488 . + . ID=Phyra75879.2;Parent=Phyra75879;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . repeat_region 71731 71738 . ? . description=dust scaffold_15 . repeat_region 73715 73907 . ? . description=trf scaffold_15 . repeat_region 75897 75905 . ? . description=dust scaffold_15 . repeat_region 78851 78858 . ? . description=dust scaffold_15 . repeat_region 79553 79897 . + . description=Polinton-1_PI scaffold_15 . repeat_region 80778 80966 . + . description=Polinton-1_PI scaffold_15 . biological_region 82107 82108 0.999 + . logic_name=eponine scaffold_15 . biological_region 82346 82347 0.999 - . logic_name=eponine scaffold_15 . biological_region 83598 83598 0.999 + . logic_name=eponine scaffold_15 . biological_region 83610 83612 0.999 - . logic_name=eponine scaffold_15 . biological_region 84750 84753 0.999 - . logic_name=eponine scaffold_15 . biological_region 88152 88153 0.999 + . logic_name=eponine scaffold_15 . biological_region 88391 88392 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 80918 81800 . - . ID=Phyra75880;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000014;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 80918 81800 . - . ID=Phyra75880;Parent=Phyra75880;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 80918 80922 . - 0 ID=Phyra75880;Parent=Phyra75880;rank=3 scaffold_15 . exon 80918 80922 . - . ID=Phyra75880.3;Parent=Phyra75880;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 80989 81313 . - 0 ID=Phyra75880;Parent=Phyra75880;rank=2 scaffold_15 . exon 80989 81313 . - . ID=Phyra75880.2;Parent=Phyra75880;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_15 . CDS 81402 81800 . - 0 ID=Phyra75880;Parent=Phyra75880;rank=1 scaffold_15 . exon 81402 81800 . - . ID=Phyra75880.1;Parent=Phyra75880;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 81974 83262 . + . ID=Phyra75881;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000015;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 81974 83262 . + . ID=Phyra75881;Parent=Phyra75881;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 81974 83110 . + 0 ID=Phyra75881;Parent=Phyra75881;rank=1 scaffold_15 . exon 81974 83110 . + . ID=Phyra75881.1;Parent=Phyra75881;constitutive=1;rank=1 scaffold_15 . CDS 83224 83262 . + 0 ID=Phyra75881;Parent=Phyra75881;rank=2 scaffold_15 . exon 83224 83262 . + . ID=Phyra75881.2;Parent=Phyra75881;constitutive=1;rank=2 scaffold_15 ensembl protein_coding_gene 83431 85012 . - . ID=Phyra75882;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000016;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 83431 85012 . - . ID=Phyra75882;Parent=Phyra75882;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 83431 84842 . - 0 ID=Phyra75882;Parent=Phyra75882;rank=2 scaffold_15 . exon 83431 84842 . - . ID=Phyra75882.2;Parent=Phyra75882;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 84907 85012 . - 0 ID=Phyra75882;Parent=Phyra75882;rank=1 scaffold_15 . exon 84907 85012 . - . ID=Phyra75882.1;Parent=Phyra75882;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 86300 87026 . + . ID=Phyra75883;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000017;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 86300 87026 . + . ID=Phyra75883;Parent=Phyra75883;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 86300 86344 . + 0 ID=Phyra75883;Parent=Phyra75883;rank=1 scaffold_15 . exon 86300 86344 . + . ID=Phyra75883.1;Parent=Phyra75883;constitutive=1;rank=1 scaffold_15 . CDS 86414 86608 . + 0 ID=Phyra75883;Parent=Phyra75883;rank=2 scaffold_15 . exon 86414 86608 . + . ID=Phyra75883.2;Parent=Phyra75883;constitutive=1;rank=2 scaffold_15 . CDS 86694 87026 . + 0 ID=Phyra75883;Parent=Phyra75883;rank=3 scaffold_15 . exon 86694 87026 . + . ID=Phyra75883.3;Parent=Phyra75883;constitutive=1;rank=3 scaffold_15 ensembl protein_coding_gene 87226 88524 . - . ID=Phyra75884;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000018;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 87226 88524 . - . ID=Phyra75884;Parent=Phyra75884;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 87226 88524 . - 0 ID=Phyra75884;Parent=Phyra75884;rank=1 scaffold_15 . exon 87226 88524 . - . ID=Phyra75884.1;Parent=Phyra75884;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 88698 89748 . + . ID=Phyra75885;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000019;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 88698 89748 . + . ID=Phyra75885;Parent=Phyra75885;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 88698 89069 . + 0 ID=Phyra75885;Parent=Phyra75885;rank=1 scaffold_15 . exon 88698 89069 . + . ID=Phyra75885.1;Parent=Phyra75885;constitutive=1;rank=1 scaffold_15 . CDS 89098 89127 . + 0 ID=Phyra75885;Parent=Phyra75885;rank=2 scaffold_15 . exon 89098 89127 . + . ID=Phyra75885.2;Parent=Phyra75885;constitutive=1;rank=2 scaffold_15 . CDS 89185 89748 . + 0 ID=Phyra75885;Parent=Phyra75885;rank=3 scaffold_15 . exon 89185 89748 . + . ID=Phyra75885.3;Parent=Phyra75885;constitutive=1;rank=3 scaffold_15 . repeat_region 98713 98721 . ? . description=dust scaffold_15 . repeat_region 98959 98985 . ? . description=trf scaffold_15 . repeat_region 98961 99024 . ? . description=dust scaffold_15 ensembl protein_coding_gene 90501 90998 . - . ID=Phyra75886;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000020;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 90501 90998 . - . ID=Phyra75886;Parent=Phyra75886;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 90501 90998 . - 0 ID=Phyra75886;Parent=Phyra75886;rank=1 scaffold_15 . exon 90501 90998 . - . ID=Phyra75886.1;Parent=Phyra75886;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 92085 92750 . + . ID=Phyra75887;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000021;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 92085 92750 . + . ID=Phyra75887;Parent=Phyra75887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 92085 92750 . + 0 ID=Phyra75887;Parent=Phyra75887;rank=1 scaffold_15 . exon 92085 92750 . + . ID=Phyra75887.1;Parent=Phyra75887;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 92823 94538 . - . ID=Phyra75888;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000022;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 92823 94538 . - . ID=Phyra75888;Parent=Phyra75888;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 92823 94538 . - 0 ID=Phyra75888;Parent=Phyra75888;rank=1 scaffold_15 . exon 92823 94538 . - . ID=Phyra75888.1;Parent=Phyra75888;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 96186 97104 . + . ID=Phyra75889;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000023;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 96186 97104 . + . ID=Phyra75889;Parent=Phyra75889;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 96186 96234 . + 0 ID=Phyra75889;Parent=Phyra75889;rank=1 scaffold_15 . exon 96186 96234 . + . ID=Phyra75889.1;Parent=Phyra75889;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 96303 96682 . + 0 ID=Phyra75889;Parent=Phyra75889;rank=2 scaffold_15 . exon 96303 96682 . + . ID=Phyra75889.2;Parent=Phyra75889;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 96740 96878 . + 0 ID=Phyra75889;Parent=Phyra75889;rank=3 scaffold_15 . exon 96740 96878 . + . ID=Phyra75889.3;Parent=Phyra75889;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . CDS 96944 97104 . + 0 ID=Phyra75889;Parent=Phyra75889;rank=4 scaffold_15 . exon 96944 97104 . + . ID=Phyra75889.4;Parent=Phyra75889;constitutive=1;ensembl_phase=1;rank=4 scaffold_15 ensembl protein_coding_gene 97150 98107 . - . ID=Phyra75890;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000024;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 97150 98107 . - . ID=Phyra75890;Parent=Phyra75890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 97150 97936 . - 0 ID=Phyra75890;Parent=Phyra75890;rank=2 scaffold_15 . exon 97150 97936 . - . ID=Phyra75890.2;Parent=Phyra75890;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 98052 98107 . - 0 ID=Phyra75890;Parent=Phyra75890;rank=1 scaffold_15 . exon 98052 98107 . - . ID=Phyra75890.1;Parent=Phyra75890;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 98875 104349 . + . ID=Phyra75891;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000025;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 98875 104349 . + . ID=Phyra75891;Parent=Phyra75891;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 98875 104349 . + 0 ID=Phyra75891;Parent=Phyra75891;rank=1 scaffold_15 . exon 98875 104349 . + . ID=Phyra75891.1;Parent=Phyra75891;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 104424 107500 . - . ID=Phyra75892;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000026;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 104424 107500 . - . ID=Phyra75892;Parent=Phyra75892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 104424 105683 . - 0 ID=Phyra75892;Parent=Phyra75892;rank=3 scaffold_15 . exon 104424 105683 . - . ID=Phyra75892.3;Parent=Phyra75892;constitutive=1;rank=3 scaffold_15 . CDS 105746 106295 . - 0 ID=Phyra75892;Parent=Phyra75892;rank=2 scaffold_15 . exon 105746 106295 . - . ID=Phyra75892.2;Parent=Phyra75892;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 106431 107500 . - 0 ID=Phyra75892;Parent=Phyra75892;rank=1 scaffold_15 . exon 106431 107500 . - . ID=Phyra75892.1;Parent=Phyra75892;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 108832 109840 . - . ID=Phyra75893;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000027;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 108832 109840 . - . ID=Phyra75893;Parent=Phyra75893;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 108832 109008 . - 0 ID=Phyra75893;Parent=Phyra75893;rank=2 scaffold_15 . exon 108832 109008 . - . ID=Phyra75893.2;Parent=Phyra75893;constitutive=1;rank=2 scaffold_15 . CDS 109088 109840 . - 0 ID=Phyra75893;Parent=Phyra75893;rank=1 scaffold_15 . exon 109088 109840 . - . ID=Phyra75893.1;Parent=Phyra75893;constitutive=1;rank=1 scaffold_15 . biological_region 109689 109693 0.999 + . logic_name=eponine scaffold_15 . biological_region 109770 109773 0.999 + . logic_name=eponine scaffold_15 . repeat_region 109881 109921 . ? . description=trf scaffold_15 . repeat_region 110530 110642 . ? . description=trf scaffold_15 . biological_region 110843 110845 0.999 + . logic_name=eponine scaffold_15 . repeat_region 111073 111596 . ? . description=trf scaffold_15 . biological_region 112752 112755 0.999 + . logic_name=eponine scaffold_15 . biological_region 113501 113503 0.999 - . logic_name=eponine scaffold_15 . repeat_region 114580 114610 . ? . description=trf scaffold_15 . repeat_region 114580 114610 . ? . description=dust scaffold_15 . repeat_region 116889 117495 . ? . description=trf scaffold_15 . repeat_region 117013 117033 . ? . description=trf scaffold_15 . repeat_region 117636 117724 . ? . description=trf scaffold_15 . repeat_region 117640 117742 . ? . description=trf scaffold_15 . repeat_region 118301 118315 . ? . description=dust scaffold_15 . repeat_region 118594 118628 . ? . description=trf scaffold_15 ensembl protein_coding_gene 110365 112009 . - . ID=Phyra75894;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000028;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 110365 112009 . - . ID=Phyra75894;Parent=Phyra75894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 110365 111129 . - 0 ID=Phyra75894;Parent=Phyra75894;rank=3 scaffold_15 . exon 110365 111129 . - . ID=Phyra75894.3;Parent=Phyra75894;constitutive=1;rank=3 scaffold_15 . CDS 111195 111693 . - 0 ID=Phyra75894;Parent=Phyra75894;rank=2 scaffold_15 . exon 111195 111693 . - . ID=Phyra75894.2;Parent=Phyra75894;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 111747 112009 . - 0 ID=Phyra75894;Parent=Phyra75894;rank=1 scaffold_15 . exon 111747 112009 . - . ID=Phyra75894.1;Parent=Phyra75894;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 114128 115273 . + . ID=Phyra75895;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000029;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 114128 115273 . + . ID=Phyra75895;Parent=Phyra75895;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 114128 115273 . + 0 ID=Phyra75895;Parent=Phyra75895;rank=1 scaffold_15 . exon 114128 115273 . + . ID=Phyra75895.1;Parent=Phyra75895;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 116623 117851 . + . ID=Phyra75896;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000030;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 116623 117851 . + . ID=Phyra75896;Parent=Phyra75896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 116623 117469 . + 0 ID=Phyra75896;Parent=Phyra75896;rank=1 scaffold_15 . exon 116623 117469 . + . ID=Phyra75896.1;Parent=Phyra75896;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 117550 117851 . + 0 ID=Phyra75896;Parent=Phyra75896;rank=2 scaffold_15 . exon 117550 117851 . + . ID=Phyra75896.2;Parent=Phyra75896;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 ensembl protein_coding_gene 125262 126714 . - . ID=Phyra71372;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_15000001;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 125262 126714 . - . ID=Phyra71372;Parent=Phyra71372;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 125262 125585 . - 0 ID=Phyra71372;Parent=Phyra71372;rank=3 scaffold_15 . exon 125262 125585 . - . ID=Phyra71372.3;Parent=Phyra71372;constitutive=1;rank=3 scaffold_15 . CDS 125657 126184 . - 0 ID=Phyra71372;Parent=Phyra71372;rank=2 scaffold_15 . exon 125657 126184 . - . ID=Phyra71372.2;Parent=Phyra71372;constitutive=1;rank=2 scaffold_15 . CDS 126289 126714 . - 0 ID=Phyra71372;Parent=Phyra71372;rank=1 scaffold_15 . exon 126289 126714 . - . ID=Phyra71372.1;Parent=Phyra71372;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 127391 128665 . + . ID=Phyra71373;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_15000002;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 127391 128665 . + . ID=Phyra71373;Parent=Phyra71373;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 127391 128665 . + 0 ID=Phyra71373;Parent=Phyra71373;rank=1 scaffold_15 . exon 127391 128665 . + . ID=Phyra71373.1;Parent=Phyra71373;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 121741 122646 . + . ID=Phyra75897;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000031;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 121741 122646 . + . ID=Phyra75897;Parent=Phyra75897;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 121741 122646 . + 0 ID=Phyra75897;Parent=Phyra75897;rank=1 scaffold_15 . exon 121741 122646 . + . ID=Phyra75897.1;Parent=Phyra75897;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 123881 125008 . + . ID=Phyra75898;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000032;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 123881 125008 . + . ID=Phyra75898;Parent=Phyra75898;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 123881 125008 . + 0 ID=Phyra75898;Parent=Phyra75898;rank=1 scaffold_15 . exon 123881 125008 . + . ID=Phyra75898.1;Parent=Phyra75898;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 128812 129816 . - . ID=Phyra75901;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000035;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 128812 129816 . - . ID=Phyra75901;Parent=Phyra75901;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 128812 129816 . - 0 ID=Phyra75901;Parent=Phyra75901;rank=1 scaffold_15 . exon 128812 129816 . - . ID=Phyra75901.1;Parent=Phyra75901;constitutive=1;rank=1 scaffold_15 . biological_region 132423 132424 0.999 + . logic_name=eponine scaffold_15 . biological_region 132499 132505 0.999 - . logic_name=eponine scaffold_15 . biological_region 132570 132576 0.999 - . logic_name=eponine scaffold_15 . biological_region 132594 132598 0.999 - . logic_name=eponine scaffold_15 . biological_region 134739 134744 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 133271 134146 . + . ID=Phyra75902;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000036;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 133271 134146 . + . ID=Phyra75902;Parent=Phyra75902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 133271 134146 . + 0 ID=Phyra75902;Parent=Phyra75902;rank=1 scaffold_15 . exon 133271 134146 . + . ID=Phyra75902.1;Parent=Phyra75902;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 135047 137332 . - . ID=Phyra75903;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000037;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 135047 137332 . - . ID=Phyra75903;Parent=Phyra75903;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 135047 137332 . - 0 ID=Phyra75903;Parent=Phyra75903;rank=1 scaffold_15 . exon 135047 137332 . - . ID=Phyra75903.1;Parent=Phyra75903;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 137615 138485 . + . ID=Phyra75904;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000038;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 137615 138485 . + . ID=Phyra75904;Parent=Phyra75904;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 137615 137929 . + 0 ID=Phyra75904;Parent=Phyra75904;rank=1 scaffold_15 . exon 137615 137929 . + . ID=Phyra75904.1;Parent=Phyra75904;constitutive=1;rank=1 scaffold_15 . CDS 137997 138485 . + 0 ID=Phyra75904;Parent=Phyra75904;rank=2 scaffold_15 . exon 137997 138485 . + . ID=Phyra75904.2;Parent=Phyra75904;constitutive=1;rank=2 scaffold_15 ensembl protein_coding_gene 140384 141188 . - . ID=Phyra42122;biotype=protein_coding;external_name=gwEuk.15.164.1;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 140384 141188 . - . ID=Phyra42122;Parent=Phyra42122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 140384 140707 . - 0 ID=Phyra42122;Parent=Phyra42122;rank=3 scaffold_15 . exon 140384 140707 . - . ID=Phyra42122.3;Parent=Phyra42122;constitutive=1;rank=3 scaffold_15 . CDS 140791 140923 . - 0 ID=Phyra42122;Parent=Phyra42122;rank=2 scaffold_15 . exon 140791 140923 . - . ID=Phyra42122.2;Parent=Phyra42122;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 140977 141188 . - 0 ID=Phyra42122;Parent=Phyra42122;rank=1 scaffold_15 . exon 140977 141188 . - . ID=Phyra42122.1;Parent=Phyra42122;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 139316 140203 . + . ID=Phyra75905;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000039;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 139316 140203 . + . ID=Phyra75905;Parent=Phyra75905;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 139316 140203 . + 0 ID=Phyra75905;Parent=Phyra75905;rank=1 scaffold_15 . exon 139316 140203 . + . ID=Phyra75905.1;Parent=Phyra75905;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 141973 142761 . + . ID=Phyra75907;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000041;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 141973 142761 . + . ID=Phyra75907;Parent=Phyra75907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 141973 142761 . + 0 ID=Phyra75907;Parent=Phyra75907;rank=1 scaffold_15 . exon 141973 142761 . + . ID=Phyra75907.1;Parent=Phyra75907;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 145019 146560 . - . ID=Phyra75908;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000042;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 145019 146560 . - . ID=Phyra75908;Parent=Phyra75908;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 145019 145635 . - 0 ID=Phyra75908;Parent=Phyra75908;rank=6 scaffold_15 . exon 145019 145635 . - . ID=Phyra75908.6;Parent=Phyra75908;constitutive=1;ensembl_phase=1;rank=6 scaffold_15 . CDS 145687 145988 . - 0 ID=Phyra75908;Parent=Phyra75908;rank=5 scaffold_15 . exon 145687 145988 . - . ID=Phyra75908.5;Parent=Phyra75908;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 146073 146103 . - 0 ID=Phyra75908;Parent=Phyra75908;rank=4 scaffold_15 . exon 146073 146103 . - . ID=Phyra75908.4;Parent=Phyra75908;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_15 . CDS 146169 146337 . - 0 ID=Phyra75908;Parent=Phyra75908;rank=3 scaffold_15 . exon 146169 146337 . - . ID=Phyra75908.3;Parent=Phyra75908;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . CDS 146397 146406 . - 0 ID=Phyra75908;Parent=Phyra75908;rank=2 scaffold_15 . exon 146397 146406 . - . ID=Phyra75908.2;Parent=Phyra75908;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 146493 146560 . - 0 ID=Phyra75908;Parent=Phyra75908;rank=1 scaffold_15 . exon 146493 146560 . - . ID=Phyra75908.1;Parent=Phyra75908;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . biological_region 149473 149476 0.999 + . logic_name=eponine scaffold_15 . biological_region 152609 152614 0.999 + . logic_name=eponine scaffold_15 . biological_region 153918 153922 0.999 + . logic_name=eponine scaffold_15 . biological_region 154017 154022 0.999 - . logic_name=eponine scaffold_15 . biological_region 154051 154054 0.999 - . logic_name=eponine scaffold_15 . biological_region 155526 155527 0.999 - . logic_name=eponine scaffold_15 . biological_region 155872 155873 0.999 + . logic_name=eponine scaffold_15 . repeat_region 158174 158184 . ? . description=dust scaffold_15 . repeat_region 158402 159464 . ? . description=dust scaffold_15 ensembl protein_coding_gene 149036 150246 . + . ID=Phyra75909;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000043;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 149036 150246 . + . ID=Phyra75909;Parent=Phyra75909;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 149036 149711 . + 0 ID=Phyra75909;Parent=Phyra75909;rank=1 scaffold_15 . exon 149036 149711 . + . ID=Phyra75909.1;Parent=Phyra75909;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 149782 149857 . + 0 ID=Phyra75909;Parent=Phyra75909;rank=2 scaffold_15 . exon 149782 149857 . + . ID=Phyra75909.2;Parent=Phyra75909;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_15 . CDS 149943 150246 . + 0 ID=Phyra75909;Parent=Phyra75909;rank=3 scaffold_15 . exon 149943 150246 . + . ID=Phyra75909.3;Parent=Phyra75909;constitutive=1;ensembl_phase=2;rank=3 scaffold_15 ensembl protein_coding_gene 150693 153418 . - . ID=Phyra75910;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000044;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 150693 153418 . - . ID=Phyra75910;Parent=Phyra75910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 150693 153151 . - 0 ID=Phyra75910;Parent=Phyra75910;rank=2 scaffold_15 . exon 150693 153151 . - . ID=Phyra75910.2;Parent=Phyra75910;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 153268 153418 . - 0 ID=Phyra75910;Parent=Phyra75910;rank=1 scaffold_15 . exon 153268 153418 . - . ID=Phyra75910.1;Parent=Phyra75910;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 153815 155317 . + . ID=Phyra75911;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000045;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 153815 155317 . + . ID=Phyra75911;Parent=Phyra75911;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 153815 155317 . + 0 ID=Phyra75911;Parent=Phyra75911;rank=1 scaffold_15 . exon 153815 155317 . + . ID=Phyra75911.1;Parent=Phyra75911;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 155429 157444 . - . ID=Phyra75912;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000046;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 155429 157444 . - . ID=Phyra75912;Parent=Phyra75912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 155429 157444 . - 0 ID=Phyra75912;Parent=Phyra75912;rank=1 scaffold_15 . exon 155429 157444 . - . ID=Phyra75912.1;Parent=Phyra75912;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 159667 160362 . + . ID=Phyra75913;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000047;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 159667 160362 . + . ID=Phyra75913;Parent=Phyra75913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 159667 160362 . + 0 ID=Phyra75913;Parent=Phyra75913;rank=1 scaffold_15 . exon 159667 160362 . + . ID=Phyra75913.1;Parent=Phyra75913;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 160655 162579 . + . ID=Phyra75914;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000048;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 160655 162579 . + . ID=Phyra75914;Parent=Phyra75914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 160655 160705 . + 0 ID=Phyra75914;Parent=Phyra75914;rank=1 scaffold_15 . exon 160655 160705 . + . ID=Phyra75914.1;Parent=Phyra75914;constitutive=1;rank=1 scaffold_15 . CDS 160792 162579 . + 0 ID=Phyra75914;Parent=Phyra75914;rank=2 scaffold_15 . exon 160792 162579 . + . ID=Phyra75914.2;Parent=Phyra75914;constitutive=1;rank=2 scaffold_15 . repeat_region 169460 169509 . ? . description=dust scaffold_15 . repeat_region 170319 170368 . ? . description=dust scaffold_15 . repeat_region 171283 171292 . ? . description=dust scaffold_15 . repeat_region 171534 171581 . ? . description=trf scaffold_15 ensembl protein_coding_gene 173485 174218 . + . ID=Phyra71374;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_15000003;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 173485 174218 . + . ID=Phyra71374;Parent=Phyra71374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 173485 173744 . + 0 ID=Phyra71374;Parent=Phyra71374;rank=1 scaffold_15 . exon 173485 173744 . + . ID=Phyra71374.1;Parent=Phyra71374;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 173811 174044 . + 0 ID=Phyra71374;Parent=Phyra71374;rank=2 scaffold_15 . exon 173811 174044 . + . ID=Phyra71374.2;Parent=Phyra71374;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_15 . CDS 174110 174218 . + 0 ID=Phyra71374;Parent=Phyra71374;rank=3 scaffold_15 . exon 174110 174218 . + . ID=Phyra71374.3;Parent=Phyra71374;constitutive=1;ensembl_phase=2;rank=3 scaffold_15 ensembl protein_coding_gene 169716 170183 . + . ID=Phyra75915;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000049;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 169716 170183 . + . ID=Phyra75915;Parent=Phyra75915;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 169716 170183 . + 0 ID=Phyra75915;Parent=Phyra75915;rank=1 scaffold_15 . exon 169716 170183 . + . ID=Phyra75915.1;Parent=Phyra75915;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 171862 173341 . - . ID=Phyra75916;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000050;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 171862 173341 . - . ID=Phyra75916;Parent=Phyra75916;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 171862 172023 . - 0 ID=Phyra75916;Parent=Phyra75916;rank=4 scaffold_15 . exon 171862 172023 . - . ID=Phyra75916.4;Parent=Phyra75916;constitutive=1;rank=4 scaffold_15 . CDS 172089 172232 . - 0 ID=Phyra75916;Parent=Phyra75916;rank=3 scaffold_15 . exon 172089 172232 . - . ID=Phyra75916.3;Parent=Phyra75916;constitutive=1;rank=3 scaffold_15 . CDS 172342 172458 . - 0 ID=Phyra75916;Parent=Phyra75916;rank=2 scaffold_15 . exon 172342 172458 . - . ID=Phyra75916.2;Parent=Phyra75916;constitutive=1;rank=2 scaffold_15 . CDS 172526 173341 . - 0 ID=Phyra75916;Parent=Phyra75916;rank=1 scaffold_15 . exon 172526 173341 . - . ID=Phyra75916.1;Parent=Phyra75916;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 174430 177466 . + . ID=Phyra75918;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000052;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 174430 177466 . + . ID=Phyra75918;Parent=Phyra75918;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 174430 176205 . + 0 ID=Phyra75918;Parent=Phyra75918;rank=1 scaffold_15 . exon 174430 176205 . + . ID=Phyra75918.1;Parent=Phyra75918;constitutive=1;rank=1 scaffold_15 . CDS 176273 177466 . + 0 ID=Phyra75918;Parent=Phyra75918;rank=2 scaffold_15 . exon 176273 177466 . + . ID=Phyra75918.2;Parent=Phyra75918;constitutive=1;rank=2 scaffold_15 ensembl protein_coding_gene 177653 179740 . - . ID=Phyra75919;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000053;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 177653 179740 . - . ID=Phyra75919;Parent=Phyra75919;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 177653 178422 . - 0 ID=Phyra75919;Parent=Phyra75919;rank=6 scaffold_15 . exon 177653 178422 . - . ID=Phyra75919.6;Parent=Phyra75919;constitutive=1;ensembl_phase=1;rank=6 scaffold_15 . CDS 178677 179071 . - 0 ID=Phyra75919;Parent=Phyra75919;rank=5 scaffold_15 . exon 178677 179071 . - . ID=Phyra75919.5;Parent=Phyra75919;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 179136 179210 . - 0 ID=Phyra75919;Parent=Phyra75919;rank=4 scaffold_15 . CDS 179271 179385 . - 0 ID=Phyra75919;Parent=Phyra75919;rank=3 scaffold_15 . CDS 179443 179594 . - 0 ID=Phyra75919;Parent=Phyra75919;rank=2 scaffold_15 . CDS 179661 179740 . - 0 ID=Phyra75919;Parent=Phyra75919;rank=1 scaffold_15 . exon 179136 179210 . - . ID=Phyra75919.4;Parent=Phyra75919;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_15 . exon 179271 179385 . - . ID=Phyra75919.3;Parent=Phyra75919;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_15 . exon 179443 179594 . - . ID=Phyra75919.2;Parent=Phyra75919;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_15 . exon 179661 179740 . - . ID=Phyra75919.1;Parent=Phyra75919;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 183893 184626 . + . ID=Phyra75920;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000054;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 183893 184626 . + . ID=Phyra75920;Parent=Phyra75920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 183893 184011 . + 0 ID=Phyra75920;Parent=Phyra75920;rank=1 scaffold_15 . exon 183893 184011 . + . ID=Phyra75920.1;Parent=Phyra75920;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 184096 184253 . + 0 ID=Phyra75920;Parent=Phyra75920;rank=2 scaffold_15 . exon 184096 184253 . + . ID=Phyra75920.2;Parent=Phyra75920;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 184370 184490 . + 0 ID=Phyra75920;Parent=Phyra75920;rank=3 scaffold_15 . exon 184370 184490 . + . ID=Phyra75920.3;Parent=Phyra75920;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_15 . CDS 184557 184626 . + 0 ID=Phyra75920;Parent=Phyra75920;rank=4 scaffold_15 . exon 184557 184626 . + . ID=Phyra75920.4;Parent=Phyra75920;constitutive=1;ensembl_phase=2;rank=4 scaffold_15 . repeat_region 184871 188798 . ? . description=dust scaffold_15 . repeat_region 189051 189061 . ? . description=dust scaffold_15 . biological_region 189951 189953 0.999 - . logic_name=eponine scaffold_15 . biological_region 192163 192164 0.999 + . logic_name=eponine scaffold_15 . biological_region 196523 196526 0.999 + . logic_name=eponine scaffold_15 . biological_region 198217 198224 0.999 - . logic_name=eponine scaffold_15 . biological_region 198276 198279 0.999 + . logic_name=eponine scaffold_15 . biological_region 198488 198495 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 196158 198425 . + . ID=Phyra71375;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_15000004;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 196158 198425 . + . ID=Phyra71375;Parent=Phyra71375;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 196158 198425 . + 0 ID=Phyra71375;Parent=Phyra71375;rank=1 scaffold_15 . exon 196158 198425 . + . ID=Phyra71375.1;Parent=Phyra71375;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 194840 196041 . - . ID=Phyra75922;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000056;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 194840 196041 . - . ID=Phyra75922;Parent=Phyra75922;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 194840 195660 . - 0 ID=Phyra75922;Parent=Phyra75922;rank=3 scaffold_15 . exon 194840 195660 . - . ID=Phyra75922.3;Parent=Phyra75922;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 195729 195804 . - 0 ID=Phyra75922;Parent=Phyra75922;rank=2 scaffold_15 . exon 195729 195804 . - . ID=Phyra75922.2;Parent=Phyra75922;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_15 . CDS 195880 196041 . - 0 ID=Phyra75922;Parent=Phyra75922;rank=1 scaffold_15 . exon 195880 196041 . - . ID=Phyra75922.1;Parent=Phyra75922;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 189173 189588 . - . ID=Phyra94304;biotype=protein_coding;external_name=C_scaffold_15000007;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 189173 189588 . - . ID=Phyra94304;Parent=Phyra94304;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 189173 189326 . - 0 ID=Phyra94304;Parent=Phyra94304;rank=3 scaffold_15 . exon 189173 189326 . - . ID=Phyra94304.3;Parent=Phyra94304;constitutive=1;ensembl_phase=2;rank=3 scaffold_15 . CDS 189399 189525 . - 0 ID=Phyra94304;Parent=Phyra94304;rank=2 scaffold_15 . exon 189399 189525 . - . ID=Phyra94304.2;Parent=Phyra94304;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_15 . CDS 189582 189588 . - 0 ID=Phyra94304;Parent=Phyra94304;rank=1 scaffold_15 . exon 189582 189588 . - . ID=Phyra94304.1;Parent=Phyra94304;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 190409 194426 . + . ID=Phyra94305;biotype=protein_coding;external_name=C_scaffold_15000008;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 190409 194426 . + . ID=Phyra94305;Parent=Phyra94305;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 190409 190962 . + 0 ID=Phyra94305;Parent=Phyra94305;rank=1 scaffold_15 . exon 190409 190962 . + . ID=Phyra94305.1;Parent=Phyra94305;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 191161 191600 . + 0 ID=Phyra94305;Parent=Phyra94305;rank=2 scaffold_15 . exon 191161 191600 . + . ID=Phyra94305.2;Parent=Phyra94305;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 191814 191960 . + 0 ID=Phyra94305;Parent=Phyra94305;rank=3 scaffold_15 . exon 191814 191960 . + . ID=Phyra94305.3;Parent=Phyra94305;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 192234 192611 . + 0 ID=Phyra94305;Parent=Phyra94305;rank=4 scaffold_15 . exon 192234 192611 . + . ID=Phyra94305.4;Parent=Phyra94305;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_15 . CDS 192822 193076 . + 0 ID=Phyra94305;Parent=Phyra94305;rank=5 scaffold_15 . exon 192822 193076 . + . ID=Phyra94305.5;Parent=Phyra94305;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_15 . CDS 193104 193256 . + 0 ID=Phyra94305;Parent=Phyra94305;rank=6 scaffold_15 . exon 193104 193256 . + . ID=Phyra94305.6;Parent=Phyra94305;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_15 . CDS 193437 194248 . + 0 ID=Phyra94305;Parent=Phyra94305;rank=7 scaffold_15 . exon 193437 194248 . + . ID=Phyra94305.7;Parent=Phyra94305;constitutive=1;ensembl_phase=1;rank=7 scaffold_15 . CDS 194285 194392 . + 0 ID=Phyra94305;Parent=Phyra94305;rank=8 scaffold_15 . exon 194285 194392 . + . ID=Phyra94305.8;Parent=Phyra94305;constitutive=1;rank=8 scaffold_15 . CDS 194421 194426 . + 0 ID=Phyra94305;Parent=Phyra94305;rank=9 scaffold_15 . exon 194421 194426 . + . ID=Phyra94305.9;Parent=Phyra94305;constitutive=1;rank=9 scaffold_15 . repeat_region 202196 202224 . ? . description=trf scaffold_15 ensembl protein_coding_gene 198754 200783 . + . ID=Phyra75924;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000058;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 198754 200783 . + . ID=Phyra75924;Parent=Phyra75924;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 198754 199503 . + 0 ID=Phyra75924;Parent=Phyra75924;rank=1 scaffold_15 . exon 198754 199503 . + . ID=Phyra75924.1;Parent=Phyra75924;constitutive=1;rank=1 scaffold_15 . CDS 199584 199988 . + 0 ID=Phyra75924;Parent=Phyra75924;rank=2 scaffold_15 . exon 199584 199988 . + . ID=Phyra75924.2;Parent=Phyra75924;constitutive=1;rank=2 scaffold_15 . CDS 200082 200783 . + 0 ID=Phyra75924;Parent=Phyra75924;rank=3 scaffold_15 . exon 200082 200783 . + . ID=Phyra75924.3;Parent=Phyra75924;constitutive=1;rank=3 scaffold_15 ensembl protein_coding_gene 201847 206625 . + . ID=Phyra75925;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000059;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 201847 206625 . + . ID=Phyra75925;Parent=Phyra75925;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 201847 206625 . + 0 ID=Phyra75925;Parent=Phyra75925;rank=1 scaffold_15 . exon 201847 206625 . + . ID=Phyra75925.1;Parent=Phyra75925;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 206895 209042 . - . ID=Phyra75926;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000060;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 206895 209042 . - . ID=Phyra75926;Parent=Phyra75926;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 206895 207546 . - 0 ID=Phyra75926;Parent=Phyra75926;rank=4 scaffold_15 . exon 206895 207546 . - . ID=Phyra75926.4;Parent=Phyra75926;constitutive=1;ensembl_phase=2;rank=4 scaffold_15 . CDS 207615 207708 . - 0 ID=Phyra75926;Parent=Phyra75926;rank=3 scaffold_15 . exon 207615 207708 . - . ID=Phyra75926.3;Parent=Phyra75926;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_15 . CDS 207787 208471 . - 0 ID=Phyra75926;Parent=Phyra75926;rank=2 scaffold_15 . exon 207787 208471 . - . ID=Phyra75926.2;Parent=Phyra75926;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_15 . CDS 208794 209042 . - 0 ID=Phyra75926;Parent=Phyra75926;rank=1 scaffold_15 . biological_region 208901 208902 0.999 + . logic_name=eponine scaffold_15 . biological_region 209523 209526 0.999 - . logic_name=eponine scaffold_15 . biological_region 212164 212170 0.999 - . logic_name=eponine scaffold_15 . biological_region 213221 213226 0.999 - . logic_name=eponine scaffold_15 . exon 208794 209042 . - . ID=Phyra75926.1;Parent=Phyra75926;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 210444 211658 . - . ID=Phyra75927;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000061;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 210444 211658 . - . ID=Phyra75927;Parent=Phyra75927;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 210444 211658 . - 0 ID=Phyra75927;Parent=Phyra75927;rank=1 scaffold_15 . exon 210444 211658 . - . ID=Phyra75927.1;Parent=Phyra75927;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 213754 214521 . + . ID=Phyra75928;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000062;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 213754 214521 . + . ID=Phyra75928;Parent=Phyra75928;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 213754 214521 . + 0 ID=Phyra75928;Parent=Phyra75928;rank=1 scaffold_15 . exon 213754 214521 . + . ID=Phyra75928.1;Parent=Phyra75928;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 216253 216741 . + . ID=Phyra75930;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000064;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 216253 216741 . + . ID=Phyra75930;Parent=Phyra75930;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 216253 216741 . + 0 ID=Phyra75930;Parent=Phyra75930;rank=1 scaffold_15 . exon 216253 216741 . + . ID=Phyra75930.1;Parent=Phyra75930;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 214774 215545 . - . ID=Phyra94307;biotype=protein_coding;external_name=C_scaffold_15000010;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 214774 215545 . - . ID=Phyra94307;Parent=Phyra94307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 214774 214918 . - 0 ID=Phyra94307;Parent=Phyra94307;rank=5 scaffold_15 . exon 214774 214918 . - . ID=Phyra94307.5;Parent=Phyra94307;constitutive=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 214964 215047 . - 0 ID=Phyra94307;Parent=Phyra94307;rank=4 scaffold_15 . exon 214964 215047 . - . ID=Phyra94307.4;Parent=Phyra94307;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_15 . CDS 215114 215230 . - 0 ID=Phyra94307;Parent=Phyra94307;rank=3 scaffold_15 . exon 215114 215230 . - . ID=Phyra94307.3;Parent=Phyra94307;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_15 . CDS 215417 215473 . - 0 ID=Phyra94307;Parent=Phyra94307;rank=2 scaffold_15 . exon 215417 215473 . - . ID=Phyra94307.2;Parent=Phyra94307;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_15 . CDS 215499 215545 . - 0 ID=Phyra94307;Parent=Phyra94307;rank=1 scaffold_15 . exon 215499 215545 . - . ID=Phyra94307.1;Parent=Phyra94307;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . repeat_region 221447 221460 . ? . description=dust scaffold_15 . repeat_region 225675 225760 . ? . description=trf scaffold_15 ensembl protein_coding_gene 219486 220967 . + . ID=Phyra75931;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000065;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 219486 220967 . + . ID=Phyra75931;Parent=Phyra75931;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 219486 220967 . + 0 ID=Phyra75931;Parent=Phyra75931;rank=1 scaffold_15 . exon 219486 220967 . + . ID=Phyra75931.1;Parent=Phyra75931;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 223056 224027 . + . ID=Phyra75932;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000066;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 223056 224027 . + . ID=Phyra75932;Parent=Phyra75932;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 223056 224027 . + 0 ID=Phyra75932;Parent=Phyra75932;rank=1 scaffold_15 . exon 223056 224027 . + . ID=Phyra75932.1;Parent=Phyra75932;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 224648 226129 . - . ID=Phyra75933;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000067;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 224648 226129 . - . ID=Phyra75933;Parent=Phyra75933;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 224648 226129 . - 0 ID=Phyra75933;Parent=Phyra75933;rank=1 scaffold_15 . exon 224648 226129 . - . ID=Phyra75933.1;Parent=Phyra75933;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 227199 228560 . - . ID=Phyra75934;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000068;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 227199 228560 . - . ID=Phyra75934;Parent=Phyra75934;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 227199 228560 . - 0 ID=Phyra75934;Parent=Phyra75934;rank=1 scaffold_15 . exon 227199 228560 . - . ID=Phyra75934.1;Parent=Phyra75934;constitutive=1;rank=1 scaffold_15 . biological_region 231057 231058 0.999 + . logic_name=eponine scaffold_15 . biological_region 231782 231783 0.999 + . logic_name=eponine scaffold_15 . biological_region 231880 231884 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 230884 231348 . + . ID=Phyra75935;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000069;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 230884 231348 . + . ID=Phyra75935;Parent=Phyra75935;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 230884 231348 . + 0 ID=Phyra75935;Parent=Phyra75935;rank=1 scaffold_15 . exon 230884 231348 . + . ID=Phyra75935.1;Parent=Phyra75935;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 231691 235440 . - . ID=Phyra75936;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000070;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 231691 235440 . - . ID=Phyra75936;Parent=Phyra75936;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 231691 235440 . - 0 ID=Phyra75936;Parent=Phyra75936;rank=1 scaffold_15 . exon 231691 235440 . - . ID=Phyra75936.1;Parent=Phyra75936;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 236512 240399 . + . ID=Phyra75937;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000071;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 236512 240399 . + . ID=Phyra75937;Parent=Phyra75937;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 236512 240399 . + 0 ID=Phyra75937;Parent=Phyra75937;rank=1 scaffold_15 . exon 236512 240399 . + . ID=Phyra75937.1;Parent=Phyra75937;constitutive=1;rank=1 scaffold_15 . repeat_region 242030 242517 . ? . description=dust scaffold_15 . repeat_region 243327 243607 . ? . description=dust scaffold_15 ensembl protein_coding_gene 246111 246956 . + . ID=Phyra75938;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000072;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 246111 246956 . + . ID=Phyra75938;Parent=Phyra75938;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 246111 246956 . + 0 ID=Phyra75938;Parent=Phyra75938;rank=1 scaffold_15 . exon 246111 246956 . + . ID=Phyra75938.1;Parent=Phyra75938;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 247784 249088 . - . ID=Phyra75939;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000073;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 247784 249088 . - . ID=Phyra75939;Parent=Phyra75939;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 247784 249088 . - 0 ID=Phyra75939;Parent=Phyra75939;rank=1 scaffold_15 . exon 247784 249088 . - . ID=Phyra75939.1;Parent=Phyra75939;constitutive=1;rank=1 scaffold_15 . biological_region 248896 248897 0.999 + . logic_name=eponine scaffold_15 . biological_region 253642 253649 0.999 + . logic_name=eponine scaffold_15 . biological_region 255752 255756 0.999 - . logic_name=eponine scaffold_15 . biological_region 255810 255812 0.999 + . logic_name=eponine scaffold_15 . biological_region 256036 256036 0.999 - . logic_name=eponine scaffold_15 . biological_region 256120 256121 0.999 + . logic_name=eponine scaffold_15 . biological_region 256458 256462 0.999 + . logic_name=eponine scaffold_15 . biological_region 256626 256627 0.999 - . logic_name=eponine scaffold_15 . biological_region 257123 257129 0.999 + . logic_name=eponine scaffold_15 . biological_region 257160 257162 0.999 - . logic_name=eponine scaffold_15 . biological_region 257210 257213 0.999 - . logic_name=eponine scaffold_15 . biological_region 257258 257263 0.999 - . logic_name=eponine scaffold_15 . biological_region 257807 257810 0.999 + . logic_name=eponine scaffold_15 . biological_region 257822 257825 0.999 + . logic_name=eponine scaffold_15 . biological_region 257921 257926 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 251690 253114 . - . ID=Phyra75940;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000074;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 251690 253114 . - . ID=Phyra75940;Parent=Phyra75940;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 251690 253114 . - 0 ID=Phyra75940;Parent=Phyra75940;rank=1 scaffold_15 . exon 251690 253114 . - . ID=Phyra75940.1;Parent=Phyra75940;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 255880 256821 . + . ID=Phyra75941;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000075;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 255880 256821 . + . ID=Phyra75941;Parent=Phyra75941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 255880 256821 . + 0 ID=Phyra75941;Parent=Phyra75941;rank=1 scaffold_15 . exon 255880 256821 . + . ID=Phyra75941.1;Parent=Phyra75941;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 257795 260496 . + . ID=Phyra94310;biotype=protein_coding;external_name=C_scaffold_15000013;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 257795 260496 . + . ID=Phyra94310;Parent=Phyra94310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 257795 258838 . + 0 ID=Phyra94310;Parent=Phyra94310;rank=1 scaffold_15 . exon 257795 258838 . + . ID=Phyra94310.1;Parent=Phyra94310;constitutive=1;rank=1 scaffold_15 . CDS 259034 259480 . + 0 ID=Phyra94310;Parent=Phyra94310;rank=2 scaffold_15 . CDS 259946 260356 . + 0 ID=Phyra94310;Parent=Phyra94310;rank=3 scaffold_15 . CDS 260479 260496 . + 0 ID=Phyra94310;Parent=Phyra94310;rank=4 scaffold_15 . repeat_region 262438 262445 . ? . description=dust scaffold_15 . repeat_region 264291 264298 . ? . description=dust scaffold_15 ensembl protein_coding_gene 262790 263804 . + . ID=Phyra75943;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000077;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 262790 263804 . + . ID=Phyra75943;Parent=Phyra75943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 262790 262960 . + 0 ID=Phyra75943;Parent=Phyra75943;rank=1 scaffold_15 . exon 262790 262960 . + . ID=Phyra75943.1;Parent=Phyra75943;constitutive=1;rank=1 scaffold_15 . CDS 263049 263135 . + 0 ID=Phyra75943;Parent=Phyra75943;rank=2 scaffold_15 . exon 263049 263135 . + . ID=Phyra75943.2;Parent=Phyra75943;constitutive=1;rank=2 scaffold_15 . CDS 263244 263804 . + 0 ID=Phyra75943;Parent=Phyra75943;rank=3 scaffold_15 . exon 263244 263804 . + . ID=Phyra75943.3;Parent=Phyra75943;constitutive=1;rank=3 scaffold_15 . exon 259034 259480 . + . ID=Phyra94310.2;Parent=Phyra94310;constitutive=1;rank=2 scaffold_15 . exon 259946 260356 . + . ID=Phyra94310.3;Parent=Phyra94310;constitutive=1;rank=3 scaffold_15 . exon 260479 260496 . + . ID=Phyra94310.4;Parent=Phyra94310;constitutive=1;rank=4 scaffold_15 . biological_region 271049 271055 0.999 + . logic_name=eponine scaffold_15 . biological_region 271057 271062 0.999 - . logic_name=eponine scaffold_15 . biological_region 272269 272273 0.999 - . logic_name=eponine scaffold_15 . repeat_region 272350 272371 . ? . description=trf scaffold_15 . biological_region 272549 272552 0.999 + . logic_name=eponine scaffold_15 . biological_region 272564 272568 0.999 + . logic_name=eponine scaffold_15 . biological_region 272577 272579 0.999 - . logic_name=eponine scaffold_15 . biological_region 272589 272594 0.999 + . logic_name=eponine scaffold_15 . biological_region 272654 272661 0.999 - . logic_name=eponine scaffold_15 . biological_region 272655 272661 0.999 + . logic_name=eponine scaffold_15 . biological_region 274262 274266 0.999 + . logic_name=eponine scaffold_15 . repeat_region 275247 275722 . ? . description=trf scaffold_15 . biological_region 277213 277219 0.999 - . logic_name=eponine scaffold_15 . biological_region 277213 277220 0.999 + . logic_name=eponine scaffold_15 . biological_region 277280 277285 0.999 - . logic_name=eponine scaffold_15 . biological_region 277295 277297 0.999 + . logic_name=eponine scaffold_15 . biological_region 277306 277310 0.999 - . logic_name=eponine scaffold_15 . biological_region 277322 277325 0.999 - . logic_name=eponine scaffold_15 . biological_region 277597 277601 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 270171 271178 . + . ID=Phyra75944;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000078;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 270171 271178 . + . ID=Phyra75944;Parent=Phyra75944;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 270171 271178 . + 0 ID=Phyra75944;Parent=Phyra75944;rank=1 scaffold_15 . exon 270171 271178 . + . ID=Phyra75944.1;Parent=Phyra75944;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 272721 273038 . + . ID=Phyra75945;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000079;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 272721 273038 . + . ID=Phyra75945;Parent=Phyra75945;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 272721 273038 . + 0 ID=Phyra75945;Parent=Phyra75945;rank=1 scaffold_15 . exon 272721 273038 . + . ID=Phyra75945.1;Parent=Phyra75945;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 273887 274573 . + . ID=Phyra75946;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000080;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 273887 274573 . + . ID=Phyra75946;Parent=Phyra75946;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 273887 274573 . + 0 ID=Phyra75946;Parent=Phyra75946;rank=1 scaffold_15 . exon 273887 274573 . + . ID=Phyra75946.1;Parent=Phyra75946;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 276835 277152 . - . ID=Phyra75947;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000081;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 276835 277152 . - . ID=Phyra75947;Parent=Phyra75947;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 276835 277152 . - 0 ID=Phyra75947;Parent=Phyra75947;rank=1 scaffold_15 . exon 276835 277152 . - . ID=Phyra75947.1;Parent=Phyra75947;constitutive=1;rank=1 scaffold_15 . repeat_region 281632 281640 . ? . description=dust scaffold_15 . repeat_region 282709 282717 . ? . description=dust scaffold_15 ensembl protein_coding_gene 281163 281546 . - . ID=Phyra75948;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000082;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 281163 281546 . - . ID=Phyra75948;Parent=Phyra75948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 281163 281546 . - 0 ID=Phyra75948;Parent=Phyra75948;rank=1 scaffold_15 . exon 281163 281546 . - . ID=Phyra75948.1;Parent=Phyra75948;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 283898 285601 . + . ID=Phyra75950;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000084;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 283898 285601 . + . ID=Phyra75950;Parent=Phyra75950;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 283898 285601 . + 0 ID=Phyra75950;Parent=Phyra75950;rank=1 scaffold_15 . exon 283898 285601 . + . ID=Phyra75950.1;Parent=Phyra75950;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 285752 288663 . + . ID=Phyra75951;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000085;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 285752 288663 . + . ID=Phyra75951;Parent=Phyra75951;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 285752 288059 . + 0 ID=Phyra75951;Parent=Phyra75951;rank=1 scaffold_15 . exon 285752 288059 . + . ID=Phyra75951.1;Parent=Phyra75951;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 288125 288663 . + 0 ID=Phyra75951;Parent=Phyra75951;rank=2 scaffold_15 ensembl protein_coding_gene 282168 283283 . - . ID=Phyra94311;biotype=protein_coding;external_name=C_scaffold_15000014;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 282168 283283 . - . ID=Phyra94311;Parent=Phyra94311;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 282168 282245 . - 0 ID=Phyra94311;Parent=Phyra94311;rank=5 scaffold_15 . exon 282168 282245 . - . ID=Phyra94311.5;Parent=Phyra94311;constitutive=1;rank=5 scaffold_15 . CDS 282320 282515 . - 0 ID=Phyra94311;Parent=Phyra94311;rank=4 scaffold_15 . exon 282320 282515 . - . ID=Phyra94311.4;Parent=Phyra94311;constitutive=1;ensembl_phase=2;rank=4 scaffold_15 . CDS 282598 282802 . - 0 ID=Phyra94311;Parent=Phyra94311;rank=3 scaffold_15 . exon 282598 282802 . - . ID=Phyra94311.3;Parent=Phyra94311;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_15 . CDS 282877 283048 . - 0 ID=Phyra94311;Parent=Phyra94311;rank=2 scaffold_15 . exon 282877 283048 . - . ID=Phyra94311.2;Parent=Phyra94311;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_15 . CDS 283116 283283 . - 0 ID=Phyra94311;Parent=Phyra94311;rank=1 scaffold_15 . exon 283116 283283 . - . ID=Phyra94311.1;Parent=Phyra94311;constitutive=1;rank=1 scaffold_15 . biological_region 288561 288561 0.999 + . logic_name=eponine scaffold_15 . biological_region 290737 290738 0.999 - . logic_name=eponine scaffold_15 . biological_region 291630 291633 0.999 - . logic_name=eponine scaffold_15 . biological_region 291738 291738 0.999 - . logic_name=eponine scaffold_15 . biological_region 291779 291781 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 290354 291766 . + . ID=Phyra71376;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_15000005;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 290354 291766 . + . ID=Phyra71376;Parent=Phyra71376;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 290354 291766 . + 0 ID=Phyra71376;Parent=Phyra71376;rank=1 scaffold_15 . exon 290354 291766 . + . ID=Phyra71376.1;Parent=Phyra71376;constitutive=1;rank=1 scaffold_15 . exon 288125 288663 . + . ID=Phyra75951.2;Parent=Phyra75951;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 ensembl protein_coding_gene 292125 297525 . + . ID=Phyra75954;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000088;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 292125 297525 . + . ID=Phyra75954;Parent=Phyra75954;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 292125 292406 . + 0 ID=Phyra75954;Parent=Phyra75954;rank=1 scaffold_15 . exon 292125 292406 . + . ID=Phyra75954.1;Parent=Phyra75954;constitutive=1;rank=1 scaffold_15 . CDS 292483 297525 . + 0 ID=Phyra75954;Parent=Phyra75954;rank=2 scaffold_15 . exon 292483 297525 . + . ID=Phyra75954.2;Parent=Phyra75954;constitutive=1;rank=2 scaffold_15 ensembl protein_coding_gene 288737 289376 . - . ID=Phyra94313;biotype=protein_coding;external_name=C_scaffold_15000016;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 288737 289376 . - . ID=Phyra94313;Parent=Phyra94313;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 288737 288890 . - 0 ID=Phyra94313;Parent=Phyra94313;rank=3 scaffold_15 . exon 288737 288890 . - . ID=Phyra94313.3;Parent=Phyra94313;constitutive=1;ensembl_phase=2;rank=3 scaffold_15 . CDS 288956 289169 . - 0 ID=Phyra94313;Parent=Phyra94313;rank=2 scaffold_15 . exon 288956 289169 . - . ID=Phyra94313.2;Parent=Phyra94313;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_15 . CDS 289238 289376 . - 0 ID=Phyra94313;Parent=Phyra94313;rank=1 scaffold_15 . exon 289238 289376 . - . ID=Phyra94313.1;Parent=Phyra94313;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . repeat_region 301524 301533 . ? . description=dust scaffold_15 ensembl protein_coding_gene 298397 302473 . + . ID=Phyra75955;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000089;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 298397 302473 . + . ID=Phyra75955;Parent=Phyra75955;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 298397 302473 . + 0 ID=Phyra75955;Parent=Phyra75955;rank=1 scaffold_15 . exon 298397 302473 . + . ID=Phyra75955.1;Parent=Phyra75955;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 305996 306841 . + . ID=Phyra75956;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000090;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 305996 306841 . + . ID=Phyra75956;Parent=Phyra75956;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 305996 306841 . + 0 ID=Phyra75956;Parent=Phyra75956;rank=1 scaffold_15 . exon 305996 306841 . + . ID=Phyra75956.1;Parent=Phyra75956;constitutive=1;rank=1 scaffold_15 . repeat_region 310415 310508 . ? . description=trf scaffold_15 ensembl protein_coding_gene 308376 309358 . - . ID=Phyra75957;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000091;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 308376 309358 . - . ID=Phyra75957;Parent=Phyra75957;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 308376 309056 . - 0 ID=Phyra75957;Parent=Phyra75957;rank=2 scaffold_15 . exon 308376 309056 . - . ID=Phyra75957.2;Parent=Phyra75957;constitutive=1;rank=2 scaffold_15 . CDS 309131 309358 . - 0 ID=Phyra75957;Parent=Phyra75957;rank=1 scaffold_15 . exon 309131 309358 . - . ID=Phyra75957.1;Parent=Phyra75957;constitutive=1;rank=1 scaffold_15 . repeat_region 311144 323651 . ? . description=dust scaffold_15 . biological_region 324300 324300 0.999 - . logic_name=eponine scaffold_15 . biological_region 324356 324360 0.999 + . logic_name=eponine scaffold_15 . biological_region 324731 324732 0.999 - . logic_name=eponine scaffold_15 . biological_region 324833 324836 0.999 + . logic_name=eponine scaffold_15 . biological_region 324889 324897 0.999 + . logic_name=eponine scaffold_15 . biological_region 324940 324944 0.999 + . logic_name=eponine scaffold_15 . biological_region 324977 324978 0.999 + . logic_name=eponine scaffold_15 . biological_region 325375 325378 0.999 - . logic_name=eponine scaffold_15 . repeat_region 325848 325871 . ? . description=dust scaffold_15 . biological_region 327370 327372 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 324061 325173 . - . ID=Phyra75958;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000092;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 324061 325173 . - . ID=Phyra75958;Parent=Phyra75958;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 324061 325173 . - 0 ID=Phyra75958;Parent=Phyra75958;rank=1 scaffold_15 . exon 324061 325173 . - . ID=Phyra75958.1;Parent=Phyra75958;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 326187 331923 . + . ID=Phyra75959;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000093;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 326187 331923 . + . ID=Phyra75959;Parent=Phyra75959;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 326187 326282 . + 0 ID=Phyra75959;Parent=Phyra75959;rank=1 scaffold_15 . exon 326187 326282 . + . ID=Phyra75959.1;Parent=Phyra75959;constitutive=1;rank=1 scaffold_15 . CDS 326384 327231 . + 0 ID=Phyra75959;Parent=Phyra75959;rank=2 scaffold_15 . exon 326384 327231 . + . ID=Phyra75959.2;Parent=Phyra75959;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_15 . CDS 327308 328754 . + 0 ID=Phyra75959;Parent=Phyra75959;rank=3 scaffold_15 . exon 327308 328754 . + . ID=Phyra75959.3;Parent=Phyra75959;constitutive=1;ensembl_phase=2;rank=3 scaffold_15 . CDS 329095 329118 . + 0 ID=Phyra75959;Parent=Phyra75959;rank=4 scaffold_15 . CDS 329174 331249 . + 0 ID=Phyra75959;Parent=Phyra75959;rank=5 scaffold_15 . CDS 331407 331877 . + 0 ID=Phyra75959;Parent=Phyra75959;rank=6 scaffold_15 . CDS 331909 331923 . + 0 ID=Phyra75959;Parent=Phyra75959;rank=7 scaffold_15 . exon 329095 329118 . + . ID=Phyra75959.4;Parent=Phyra75959;constitutive=1;rank=4 scaffold_15 . exon 329174 331249 . + . ID=Phyra75959.5;Parent=Phyra75959;constitutive=1;rank=5 scaffold_15 . exon 331407 331877 . + . ID=Phyra75959.6;Parent=Phyra75959;constitutive=1;rank=6 scaffold_15 . exon 331909 331923 . + . ID=Phyra75959.7;Parent=Phyra75959;constitutive=1;rank=7 scaffold_15 ensembl protein_coding_gene 332053 333477 . - . ID=Phyra75960;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000094;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 332053 333477 . - . ID=Phyra75960;Parent=Phyra75960;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 332053 333477 . - 0 ID=Phyra75960;Parent=Phyra75960;rank=1 scaffold_15 . exon 332053 333477 . - . ID=Phyra75960.1;Parent=Phyra75960;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 334125 336286 . + . ID=Phyra75961;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000095;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 334125 336286 . + . ID=Phyra75961;Parent=Phyra75961;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 334125 334159 . + 0 ID=Phyra75961;Parent=Phyra75961;rank=1 scaffold_15 . exon 334125 334159 . + . ID=Phyra75961.1;Parent=Phyra75961;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 334225 336286 . + 0 ID=Phyra75961;Parent=Phyra75961;rank=2 scaffold_15 . exon 334225 336286 . + . ID=Phyra75961.2;Parent=Phyra75961;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 ensembl protein_coding_gene 336524 337867 . - . ID=Phyra75962;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000096;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 336524 337867 . - . ID=Phyra75962;Parent=Phyra75962;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 336524 336587 . - 0 ID=Phyra75962;Parent=Phyra75962;rank=5 scaffold_15 . exon 336524 336587 . - . ID=Phyra75962.5;Parent=Phyra75962;constitutive=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 336661 336767 . - 0 ID=Phyra75962;Parent=Phyra75962;rank=4 scaffold_15 . exon 336661 336767 . - . ID=Phyra75962.4;Parent=Phyra75962;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_15 . CDS 336840 336952 . - 0 ID=Phyra75962;Parent=Phyra75962;rank=3 scaffold_15 . exon 336840 336952 . - . ID=Phyra75962.3;Parent=Phyra75962;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 337017 337439 . - 0 ID=Phyra75962;Parent=Phyra75962;rank=2 scaffold_15 . exon 337017 337439 . - . ID=Phyra75962.2;Parent=Phyra75962;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 337513 337867 . - 0 ID=Phyra75962;Parent=Phyra75962;rank=1 scaffold_15 . exon 337513 337867 . - . ID=Phyra75962.1;Parent=Phyra75962;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . biological_region 337657 337660 0.999 - . logic_name=eponine scaffold_15 . biological_region 337735 337735 0.999 - . logic_name=eponine scaffold_15 . biological_region 337840 337844 0.999 - . logic_name=eponine scaffold_15 . biological_region 338208 338209 0.999 + . logic_name=eponine scaffold_15 . biological_region 338258 338260 0.999 + . logic_name=eponine scaffold_15 . biological_region 339324 339327 0.999 + . logic_name=eponine scaffold_15 . biological_region 339577 339582 0.999 + . logic_name=eponine scaffold_15 . repeat_region 340446 346808 . ? . description=dust scaffold_15 ensembl protein_coding_gene 347254 348237 . + . ID=Phyra71377;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_15000006;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 347254 348237 . + . ID=Phyra71377;Parent=Phyra71377;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 347254 348237 . + 0 ID=Phyra71377;Parent=Phyra71377;rank=1 scaffold_15 . exon 347254 348237 . + . ID=Phyra71377.1;Parent=Phyra71377;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 338226 340239 . - . ID=Phyra75963;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000097;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 338226 340239 . - . ID=Phyra75963;Parent=Phyra75963;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 338226 339764 . - 0 ID=Phyra75963;Parent=Phyra75963;rank=2 scaffold_15 . exon 338226 339764 . - . ID=Phyra75963.2;Parent=Phyra75963;constitutive=1;rank=2 scaffold_15 . CDS 339838 340239 . - 0 ID=Phyra75963;Parent=Phyra75963;rank=1 scaffold_15 . exon 339838 340239 . - . ID=Phyra75963.1;Parent=Phyra75963;constitutive=1;rank=1 scaffold_15 . repeat_region 348625 348780 . ? . description=trf scaffold_15 . repeat_region 351037 351128 . ? . description=trf scaffold_15 . repeat_region 351259 351368 . ? . description=trf scaffold_15 . repeat_region 351259 351371 . ? . description=trf scaffold_15 . repeat_region 351274 351371 . ? . description=trf scaffold_15 . repeat_region 351279 351389 . ? . description=trf scaffold_15 . repeat_region 351280 351371 . ? . description=trf scaffold_15 . repeat_region 356899 357085 . ? . description=trf scaffold_15 ensembl protein_coding_gene 348526 349986 . - . ID=Phyra75965;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000099;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 348526 349986 . - . ID=Phyra75965;Parent=Phyra75965;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 348526 349986 . - 0 ID=Phyra75965;Parent=Phyra75965;rank=1 scaffold_15 . exon 348526 349986 . - . ID=Phyra75965.1;Parent=Phyra75965;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 350949 352394 . - . ID=Phyra75966;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000100;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 350949 352394 . - . ID=Phyra75966;Parent=Phyra75966;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 350949 352394 . - 0 ID=Phyra75966;Parent=Phyra75966;rank=1 scaffold_15 . exon 350949 352394 . - . ID=Phyra75966.1;Parent=Phyra75966;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 353250 354548 . - . ID=Phyra75967;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000101;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 353250 354548 . - . ID=Phyra75967;Parent=Phyra75967;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 353250 354548 . - 0 ID=Phyra75967;Parent=Phyra75967;rank=1 scaffold_15 . exon 353250 354548 . - . ID=Phyra75967.1;Parent=Phyra75967;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 355250 356245 . - . ID=Phyra75968;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000102;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 355250 356245 . - . ID=Phyra75968;Parent=Phyra75968;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 355250 356245 . - 0 ID=Phyra75968;Parent=Phyra75968;rank=1 scaffold_15 . exon 355250 356245 . - . ID=Phyra75968.1;Parent=Phyra75968;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 356678 358072 . - . ID=Phyra75969;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000103;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 356678 358072 . - . ID=Phyra75969;Parent=Phyra75969;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 356678 358072 . - 0 ID=Phyra75969;Parent=Phyra75969;rank=1 scaffold_15 . exon 356678 358072 . - . ID=Phyra75969.1;Parent=Phyra75969;constitutive=1;rank=1 scaffold_15 . repeat_region 358689 358700 . ? . description=dust scaffold_15 ensembl protein_coding_gene 363272 364231 . - . ID=Phyra42003;biotype=protein_coding;external_name=gwEuk.15.45.1;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 363272 364231 . - . ID=Phyra42003;Parent=Phyra42003;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 363272 364231 . - 0 ID=Phyra42003;Parent=Phyra42003;rank=1 scaffold_15 . exon 363272 364231 . - . ID=Phyra42003.1;Parent=Phyra42003;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 359643 360686 . - . ID=Phyra75970;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000104;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 359643 360686 . - . ID=Phyra75970;Parent=Phyra75970;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 359643 360686 . - 0 ID=Phyra75970;Parent=Phyra75970;rank=1 scaffold_15 . exon 359643 360686 . - . ID=Phyra75970.1;Parent=Phyra75970;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 361993 363054 . + . ID=Phyra75971;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000105;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 361993 363054 . + . ID=Phyra75971;Parent=Phyra75971;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 361993 363054 . + 0 ID=Phyra75971;Parent=Phyra75971;rank=1 scaffold_15 . exon 361993 363054 . + . ID=Phyra75971.1;Parent=Phyra75971;constitutive=1;rank=1 scaffold_15 . biological_region 370736 370739 0.999 - . logic_name=eponine scaffold_15 . biological_region 370944 370949 0.999 + . logic_name=eponine scaffold_15 . biological_region 371068 371071 0.999 - . logic_name=eponine scaffold_15 . biological_region 371090 371097 0.999 - . logic_name=eponine scaffold_15 . biological_region 371321 371326 0.999 + . logic_name=eponine scaffold_15 . biological_region 371430 371438 0.999 - . logic_name=eponine scaffold_15 . biological_region 371525 371529 0.999 - . logic_name=eponine scaffold_15 . biological_region 371942 371945 0.999 - . logic_name=eponine scaffold_15 . biological_region 372003 372004 0.999 - . logic_name=eponine scaffold_15 . biological_region 373100 373103 0.999 - . logic_name=eponine scaffold_15 . biological_region 373699 373700 0.999 + . logic_name=eponine scaffold_15 . biological_region 375724 375729 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 367685 368948 . - . ID=Phyra75973;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000107;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 367685 368948 . - . ID=Phyra75973;Parent=Phyra75973;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 367685 367703 . - 0 ID=Phyra75973;Parent=Phyra75973;rank=3 scaffold_15 . exon 367685 367703 . - . ID=Phyra75973.3;Parent=Phyra75973;constitutive=1;ensembl_phase=2;rank=3 scaffold_15 . CDS 367792 368130 . - 0 ID=Phyra75973;Parent=Phyra75973;rank=2 scaffold_15 . exon 367792 368130 . - . ID=Phyra75973.2;Parent=Phyra75973;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_15 . CDS 368188 368948 . - 0 ID=Phyra75973;Parent=Phyra75973;rank=1 scaffold_15 . exon 368188 368948 . - . ID=Phyra75973.1;Parent=Phyra75973;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 371338 372642 . + . ID=Phyra75974;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000108;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 371338 372642 . + . ID=Phyra75974;Parent=Phyra75974;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 371338 372642 . + 0 ID=Phyra75974;Parent=Phyra75974;rank=1 scaffold_15 . exon 371338 372642 . + . ID=Phyra75974.1;Parent=Phyra75974;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 373231 374115 . - . ID=Phyra75975;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000109;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 373231 374115 . - . ID=Phyra75975;Parent=Phyra75975;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 373231 374115 . - 0 ID=Phyra75975;Parent=Phyra75975;rank=1 scaffold_15 . exon 373231 374115 . - . ID=Phyra75975.1;Parent=Phyra75975;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 374289 375159 . - . ID=Phyra75976;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000110;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 374289 375159 . - . ID=Phyra75976;Parent=Phyra75976;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 374289 374987 . - 0 ID=Phyra75976;Parent=Phyra75976;rank=2 scaffold_15 . exon 374289 374987 . - . ID=Phyra75976.2;Parent=Phyra75976;constitutive=1;rank=2 scaffold_15 . CDS 375073 375159 . - 0 ID=Phyra75976;Parent=Phyra75976;rank=1 scaffold_15 . exon 375073 375159 . - . ID=Phyra75976.1;Parent=Phyra75976;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 375311 376101 . + . ID=Phyra75977;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000111;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 375311 376101 . + . ID=Phyra75977;Parent=Phyra75977;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 375311 375329 . + 0 ID=Phyra75977;Parent=Phyra75977;rank=1 scaffold_15 . exon 375311 375329 . + . ID=Phyra75977.1;Parent=Phyra75977;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 375371 376101 . + 0 ID=Phyra75977;Parent=Phyra75977;rank=2 scaffold_15 . exon 375371 376101 . + . ID=Phyra75977.2;Parent=Phyra75977;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 ensembl protein_coding_gene 376231 377492 . - . ID=Phyra75978;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000112;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 376231 377492 . - . ID=Phyra75978;Parent=Phyra75978;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 376231 376245 . - 0 ID=Phyra75978;Parent=Phyra75978;rank=3 scaffold_15 . exon 376231 376245 . - . ID=Phyra75978.3;Parent=Phyra75978;constitutive=1;rank=3 scaffold_15 . CDS 376277 377135 . - 0 ID=Phyra75978;Parent=Phyra75978;rank=2 scaffold_15 . exon 376277 377135 . - . ID=Phyra75978.2;Parent=Phyra75978;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 377200 377492 . - 0 ID=Phyra75978;Parent=Phyra75978;rank=1 scaffold_15 . exon 377200 377492 . - . ID=Phyra75978.1;Parent=Phyra75978;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . repeat_region 378562 378594 . ? . description=trf scaffold_15 . repeat_region 382239 382268 . ? . description=trf scaffold_15 . repeat_region 382887 382912 . ? . description=trf scaffold_15 . repeat_region 383258 383292 . ? . description=trf scaffold_15 ensembl protein_coding_gene 379761 381194 . + . ID=Phyra75979;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000113;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 379761 381194 . + . ID=Phyra75979;Parent=Phyra75979;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 379761 381194 . + 0 ID=Phyra75979;Parent=Phyra75979;rank=1 scaffold_15 . exon 379761 381194 . + . ID=Phyra75979.1;Parent=Phyra75979;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 383957 386401 . - . ID=Phyra75980;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000114;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 383957 386401 . - . ID=Phyra75980;Parent=Phyra75980;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 383957 386401 . - 0 ID=Phyra75980;Parent=Phyra75980;rank=1 scaffold_15 . exon 383957 386401 . - . ID=Phyra75980.1;Parent=Phyra75980;constitutive=1;rank=1 scaffold_15 . biological_region 387932 387933 0.999 + . logic_name=eponine scaffold_15 . biological_region 388048 388050 0.999 - . logic_name=eponine scaffold_15 . biological_region 388054 388058 0.999 + . logic_name=eponine scaffold_15 . biological_region 388542 388549 0.999 - . logic_name=eponine scaffold_15 . biological_region 390344 390348 0.999 - . logic_name=eponine scaffold_15 . repeat_region 392405 392467 . ? . description=dust scaffold_15 . repeat_region 392895 392913 . ? . description=dust scaffold_15 . biological_region 393426 393431 0.999 + . logic_name=eponine scaffold_15 . biological_region 393733 393733 0.999 + . logic_name=eponine scaffold_15 . biological_region 393756 393760 0.999 + . logic_name=eponine scaffold_15 . biological_region 393780 393783 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 387568 388485 . + . ID=Phyra71378;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_15000007;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 387568 388485 . + . ID=Phyra71378;Parent=Phyra71378;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 387568 388485 . + 0 ID=Phyra71378;Parent=Phyra71378;rank=1 scaffold_15 . exon 387568 388485 . + . ID=Phyra71378.1;Parent=Phyra71378;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 388769 390448 . - . ID=Phyra75982;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000116;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 388769 390448 . - . ID=Phyra75982;Parent=Phyra75982;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 388769 390448 . - 0 ID=Phyra75982;Parent=Phyra75982;rank=1 scaffold_15 . exon 388769 390448 . - . ID=Phyra75982.1;Parent=Phyra75982;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 391145 392884 . - . ID=Phyra75983;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000117;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 391145 392884 . - . ID=Phyra75983;Parent=Phyra75983;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 391145 392884 . - 0 ID=Phyra75983;Parent=Phyra75983;rank=1 scaffold_15 . exon 391145 392884 . - . ID=Phyra75983.1;Parent=Phyra75983;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 394599 396061 . - . ID=Phyra75984;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000118;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 394599 396061 . - . ID=Phyra75984;Parent=Phyra75984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 394599 395689 . - 0 ID=Phyra75984;Parent=Phyra75984;rank=3 scaffold_15 . exon 394599 395689 . - . ID=Phyra75984.3;Parent=Phyra75984;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 395765 395908 . - 0 ID=Phyra75984;Parent=Phyra75984;rank=2 scaffold_15 . exon 395765 395908 . - . ID=Phyra75984.2;Parent=Phyra75984;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 395968 396061 . - 0 ID=Phyra75984;Parent=Phyra75984;rank=1 scaffold_15 . exon 395968 396061 . - . ID=Phyra75984.1;Parent=Phyra75984;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . repeat_region 404269 404305 . ? . description=trf scaffold_15 ensembl protein_coding_gene 404717 405775 . + . ID=Phyra42023;biotype=protein_coding;external_name=gwEuk.15.65.1;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 404717 405775 . + . ID=Phyra42023;Parent=Phyra42023;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 404717 405496 . + 0 ID=Phyra42023;Parent=Phyra42023;rank=1 scaffold_15 . exon 404717 405496 . + . ID=Phyra42023.1;Parent=Phyra42023;constitutive=1;rank=1 scaffold_15 . CDS 405575 405775 . + 0 ID=Phyra42023;Parent=Phyra42023;rank=2 scaffold_15 . exon 405575 405775 . + . ID=Phyra42023.2;Parent=Phyra42023;constitutive=1;rank=2 scaffold_15 ensembl protein_coding_gene 398045 398911 . + . ID=Phyra75985;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000119;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 398045 398911 . + . ID=Phyra75985;Parent=Phyra75985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 398045 398911 . + 0 ID=Phyra75985;Parent=Phyra75985;rank=1 scaffold_15 . exon 398045 398911 . + . ID=Phyra75985.1;Parent=Phyra75985;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 400184 401122 . + . ID=Phyra94321;biotype=protein_coding;external_name=C_scaffold_15000024;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 400184 401122 . + . ID=Phyra94321;Parent=Phyra94321;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 400184 400226 . + 0 ID=Phyra94321;Parent=Phyra94321;rank=1 scaffold_15 . exon 400184 400226 . + . ID=Phyra94321.1;Parent=Phyra94321;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 400290 400688 . + 0 ID=Phyra94321;Parent=Phyra94321;rank=2 scaffold_15 . exon 400290 400688 . + . ID=Phyra94321.2;Parent=Phyra94321;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 400959 401122 . + 0 ID=Phyra94321;Parent=Phyra94321;rank=3 scaffold_15 . exon 400959 401122 . + . ID=Phyra94321.3;Parent=Phyra94321;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 ensembl protein_coding_gene 401348 402235 . - . ID=Phyra94322;biotype=protein_coding;external_name=C_scaffold_15000025;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 401348 402235 . - . ID=Phyra94322;Parent=Phyra94322;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 401348 402235 . - 0 ID=Phyra94322;Parent=Phyra94322;rank=1 scaffold_15 . exon 401348 402235 . - . ID=Phyra94322.1;Parent=Phyra94322;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 406345 407467 . - . ID=Phyra94324;biotype=protein_coding;external_name=C_scaffold_15000027;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 406345 407467 . - . ID=Phyra94324;Parent=Phyra94324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 406345 406930 . - 0 ID=Phyra94324;Parent=Phyra94324;rank=4 scaffold_15 . exon 406345 406930 . - . ID=Phyra94324.4;Parent=Phyra94324;constitutive=1;ensembl_phase=2;rank=4 scaffold_15 . CDS 406964 407113 . - 0 ID=Phyra94324;Parent=Phyra94324;rank=3 scaffold_15 . exon 406964 407113 . - . ID=Phyra94324.3;Parent=Phyra94324;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_15 . CDS 407220 407349 . - 0 ID=Phyra94324;Parent=Phyra94324;rank=2 scaffold_15 . CDS 407437 407467 . - 0 ID=Phyra94324;Parent=Phyra94324;rank=1 scaffold_15 . biological_region 407221 407222 0.999 + . logic_name=eponine scaffold_15 . biological_region 408027 408030 0.999 + . logic_name=eponine scaffold_15 . biological_region 408082 408087 0.999 + . logic_name=eponine scaffold_15 . biological_region 408226 408228 0.999 + . logic_name=eponine scaffold_15 . biological_region 408314 408314 0.999 - . logic_name=eponine scaffold_15 . biological_region 409331 409333 0.999 - . logic_name=eponine scaffold_15 . biological_region 409496 409502 0.999 - . logic_name=eponine scaffold_15 . biological_region 409655 409656 0.999 + . logic_name=eponine scaffold_15 . biological_region 410959 410963 0.999 + . logic_name=eponine scaffold_15 . repeat_region 416148 416156 . ? . description=dust scaffold_15 . biological_region 416770 416775 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 409697 410650 . + . ID=Phyra75989;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000123;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 409697 410650 . + . ID=Phyra75989;Parent=Phyra75989;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 409697 410650 . + 0 ID=Phyra75989;Parent=Phyra75989;rank=1 scaffold_15 . exon 409697 410650 . + . ID=Phyra75989.1;Parent=Phyra75989;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 411530 412660 . - . ID=Phyra75990;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000124;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 411530 412660 . - . ID=Phyra75990;Parent=Phyra75990;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 411530 411636 . - 0 ID=Phyra75990;Parent=Phyra75990;rank=2 scaffold_15 . exon 411530 411636 . - . ID=Phyra75990.2;Parent=Phyra75990;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 411712 412660 . - 0 ID=Phyra75990;Parent=Phyra75990;rank=1 scaffold_15 . exon 411712 412660 . - . ID=Phyra75990.1;Parent=Phyra75990;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 412908 415165 . + . ID=Phyra75991;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000125;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 412908 415165 . + . ID=Phyra75991;Parent=Phyra75991;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 412908 412914 . + 0 ID=Phyra75991;Parent=Phyra75991;rank=1 scaffold_15 . exon 412908 412914 . + . ID=Phyra75991.1;Parent=Phyra75991;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 413197 413349 . + 0 ID=Phyra75991;Parent=Phyra75991;rank=2 scaffold_15 . exon 413197 413349 . + . ID=Phyra75991.2;Parent=Phyra75991;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 413418 415165 . + 0 ID=Phyra75991;Parent=Phyra75991;rank=3 scaffold_15 . exon 413418 415165 . + . ID=Phyra75991.3;Parent=Phyra75991;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 . exon 407220 407349 . - . ID=Phyra94324.2;Parent=Phyra94324;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_15 . exon 407437 407467 . - . ID=Phyra94324.1;Parent=Phyra94324;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . repeat_region 421963 421989 . ? . description=trf scaffold_15 . repeat_region 422365 422410 . ? . description=trf scaffold_15 . repeat_region 424656 430568 . ? . description=dust scaffold_15 . repeat_region 432218 432235 . ? . description=dust scaffold_15 . repeat_region 432289 435528 . ? . description=dust scaffold_15 . repeat_region 436479 436528 . ? . description=dust scaffold_15 . repeat_region 436954 436961 . ? . description=dust scaffold_15 . biological_region 442853 442857 0.999 - . logic_name=eponine scaffold_15 . biological_region 443293 443294 0.999 + . logic_name=eponine scaffold_15 . biological_region 443313 443314 0.999 - . logic_name=eponine scaffold_15 . biological_region 445515 445516 0.999 + . logic_name=eponine scaffold_15 . biological_region 445640 445640 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 442226 442976 . + . ID=Phyra75992;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000126;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 442226 442976 . + . ID=Phyra75992;Parent=Phyra75992;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 442226 442600 . + 0 ID=Phyra75992;Parent=Phyra75992;rank=1 scaffold_15 . exon 442226 442600 . + . ID=Phyra75992.1;Parent=Phyra75992;constitutive=1;rank=1 scaffold_15 . CDS 442875 442976 . + 0 ID=Phyra75992;Parent=Phyra75992;rank=2 scaffold_15 . exon 442875 442976 . + . ID=Phyra75992.2;Parent=Phyra75992;constitutive=1;rank=2 scaffold_15 ensembl protein_coding_gene 443143 443724 . - . ID=Phyra75993;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000127;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 443143 443724 . - . ID=Phyra75993;Parent=Phyra75993;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 443143 443724 . - 0 ID=Phyra75993;Parent=Phyra75993;rank=1 scaffold_15 . exon 443143 443724 . - . ID=Phyra75993.1;Parent=Phyra75993;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 444019 445191 . - . ID=Phyra75994;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000128;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 444019 445191 . - . ID=Phyra75994;Parent=Phyra75994;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 444019 445191 . - 0 ID=Phyra75994;Parent=Phyra75994;rank=1 scaffold_15 . exon 444019 445191 . - . ID=Phyra75994.1;Parent=Phyra75994;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 445550 447331 . + . ID=Phyra75995;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000129;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 445550 447331 . + . ID=Phyra75995;Parent=Phyra75995;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 445550 447331 . + 0 ID=Phyra75995;Parent=Phyra75995;rank=1 scaffold_15 . exon 445550 447331 . + . ID=Phyra75995.1;Parent=Phyra75995;constitutive=1;rank=1 scaffold_15 . repeat_region 450085 450129 . ? . description=trf scaffold_15 . repeat_region 454080 454100 . ? . description=trf scaffold_15 . repeat_region 454801 454852 . ? . description=trf scaffold_15 ensembl protein_coding_gene 447682 448872 . - . ID=Phyra75996;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000130;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 447682 448872 . - . ID=Phyra75996;Parent=Phyra75996;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 447682 448872 . - 0 ID=Phyra75996;Parent=Phyra75996;rank=1 scaffold_15 . exon 447682 448872 . - . ID=Phyra75996.1;Parent=Phyra75996;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 449193 450230 . - . ID=Phyra75997;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000131;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 449193 450230 . - . ID=Phyra75997;Parent=Phyra75997;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 449193 450230 . - 0 ID=Phyra75997;Parent=Phyra75997;rank=1 scaffold_15 . exon 449193 450230 . - . ID=Phyra75997.1;Parent=Phyra75997;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 450618 451685 . + . ID=Phyra75998;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000132;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 450618 451685 . + . ID=Phyra75998;Parent=Phyra75998;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 450618 451685 . + 0 ID=Phyra75998;Parent=Phyra75998;rank=1 scaffold_15 . exon 450618 451685 . + . ID=Phyra75998.1;Parent=Phyra75998;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 453067 453409 . - . ID=Phyra94328;biotype=protein_coding;external_name=C_scaffold_15000031;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 453067 453409 . - . ID=Phyra94328;Parent=Phyra94328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 453067 453207 . - 0 ID=Phyra94328;Parent=Phyra94328;rank=2 scaffold_15 . exon 453067 453207 . - . ID=Phyra94328.2;Parent=Phyra94328;constitutive=1;rank=2 scaffold_15 . CDS 453266 453409 . - 0 ID=Phyra94328;Parent=Phyra94328;rank=1 scaffold_15 . exon 453266 453409 . - . ID=Phyra94328.1;Parent=Phyra94328;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 454215 454541 . + . ID=Phyra94329;biotype=protein_coding;external_name=C_scaffold_15000032;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 454215 454541 . + . ID=Phyra94329;Parent=Phyra94329;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 454215 454541 . + 0 ID=Phyra94329;Parent=Phyra94329;rank=1 scaffold_15 . exon 454215 454541 . + . ID=Phyra94329.1;Parent=Phyra94329;constitutive=1;rank=1 scaffold_15 . biological_region 459514 459517 0.999 + . logic_name=eponine scaffold_15 . biological_region 459591 459595 0.999 + . logic_name=eponine scaffold_15 . biological_region 462149 462154 0.999 + . logic_name=eponine scaffold_15 . biological_region 462219 462224 0.999 + . logic_name=eponine scaffold_15 . biological_region 462322 462330 0.999 - . logic_name=eponine scaffold_15 . biological_region 463861 463862 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 462455 464532 . - . ID=Phyra76002;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000136;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 462455 464532 . - . ID=Phyra76002;Parent=Phyra76002;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 462455 463917 . - 0 ID=Phyra76002;Parent=Phyra76002;rank=2 scaffold_15 . exon 462455 463917 . - . ID=Phyra76002.2;Parent=Phyra76002;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 463941 464532 . - 0 ID=Phyra76002;Parent=Phyra76002;rank=1 scaffold_15 . exon 463941 464532 . - . ID=Phyra76002.1;Parent=Phyra76002;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 466561 467438 . + . ID=Phyra76003;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000137;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 466561 467438 . + . ID=Phyra76003;Parent=Phyra76003;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 466561 467117 . + 0 ID=Phyra76003;Parent=Phyra76003;rank=1 scaffold_15 . exon 466561 467117 . + . ID=Phyra76003.1;Parent=Phyra76003;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 467189 467438 . + 0 ID=Phyra76003;Parent=Phyra76003;rank=2 scaffold_15 ensembl protein_coding_gene 458300 462344 . + . ID=Phyra94330;biotype=protein_coding;external_name=C_scaffold_15000033;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 458300 462344 . + . ID=Phyra94330;Parent=Phyra94330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 458300 458449 . + 0 ID=Phyra94330;Parent=Phyra94330;rank=1 scaffold_15 . exon 458300 458449 . + . ID=Phyra94330.1;Parent=Phyra94330;constitutive=1;rank=1 scaffold_15 . CDS 458521 458983 . + 0 ID=Phyra94330;Parent=Phyra94330;rank=2 scaffold_15 . exon 458521 458983 . + . ID=Phyra94330.2;Parent=Phyra94330;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_15 . CDS 459017 459202 . + 0 ID=Phyra94330;Parent=Phyra94330;rank=3 scaffold_15 . exon 459017 459202 . + . ID=Phyra94330.3;Parent=Phyra94330;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 459290 459603 . + 0 ID=Phyra94330;Parent=Phyra94330;rank=4 scaffold_15 . exon 459290 459603 . + . ID=Phyra94330.4;Parent=Phyra94330;constitutive=1;ensembl_phase=1;rank=4 scaffold_15 . CDS 460706 460817 . + 0 ID=Phyra94330;Parent=Phyra94330;rank=5 scaffold_15 . exon 460706 460817 . + . ID=Phyra94330.5;Parent=Phyra94330;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_15 . CDS 460953 461484 . + 0 ID=Phyra94330;Parent=Phyra94330;rank=6 scaffold_15 . exon 460953 461484 . + . ID=Phyra94330.6;Parent=Phyra94330;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_15 . CDS 461715 461842 . + 0 ID=Phyra94330;Parent=Phyra94330;rank=7 scaffold_15 . exon 461715 461842 . + . ID=Phyra94330.7;Parent=Phyra94330;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_15 . CDS 461907 462032 . + 0 ID=Phyra94330;Parent=Phyra94330;rank=8 scaffold_15 . exon 461907 462032 . + . ID=Phyra94330.8;Parent=Phyra94330;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_15 . CDS 462100 462344 . + 0 ID=Phyra94330;Parent=Phyra94330;rank=9 scaffold_15 . exon 462100 462344 . + . ID=Phyra94330.9;Parent=Phyra94330;constitutive=1;ensembl_phase=1;rank=9 scaffold_15 . repeat_region 470327 470342 . ? . description=dust scaffold_15 . exon 467189 467438 . + . ID=Phyra76003.2;Parent=Phyra76003;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 ensembl protein_coding_gene 471076 473844 . - . ID=Phyra76005;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000139;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 471076 473844 . - . ID=Phyra76005;Parent=Phyra76005;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 471076 472229 . - 0 ID=Phyra76005;Parent=Phyra76005;rank=6 scaffold_15 . exon 471076 472229 . - . ID=Phyra76005.6;Parent=Phyra76005;constitutive=1;ensembl_phase=1;rank=6 scaffold_15 . CDS 472300 472478 . - 0 ID=Phyra76005;Parent=Phyra76005;rank=5 scaffold_15 . exon 472300 472478 . - . ID=Phyra76005.5;Parent=Phyra76005;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 472696 472785 . - 0 ID=Phyra76005;Parent=Phyra76005;rank=4 scaffold_15 . exon 472696 472785 . - . ID=Phyra76005.4;Parent=Phyra76005;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_15 . CDS 473023 473097 . - 0 ID=Phyra76005;Parent=Phyra76005;rank=3 scaffold_15 . exon 473023 473097 . - . ID=Phyra76005.3;Parent=Phyra76005;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_15 . CDS 473170 473292 . - 0 ID=Phyra76005;Parent=Phyra76005;rank=2 scaffold_15 . exon 473170 473292 . - . ID=Phyra76005.2;Parent=Phyra76005;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_15 . CDS 473354 473844 . - 0 ID=Phyra76005;Parent=Phyra76005;rank=1 scaffold_15 . exon 473354 473844 . - . ID=Phyra76005.1;Parent=Phyra76005;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 475027 475974 . + . ID=Phyra76006;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000140;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 475027 475974 . + . ID=Phyra76006;Parent=Phyra76006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 475027 475327 . + 0 ID=Phyra76006;Parent=Phyra76006;rank=1 scaffold_15 . exon 475027 475327 . + . ID=Phyra76006.1;Parent=Phyra76006;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 475400 475658 . + 0 ID=Phyra76006;Parent=Phyra76006;rank=2 scaffold_15 . exon 475400 475658 . + . ID=Phyra76006.2;Parent=Phyra76006;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_15 . CDS 475725 475974 . + 0 ID=Phyra76006;Parent=Phyra76006;rank=3 scaffold_15 . exon 475725 475974 . + . ID=Phyra76006.3;Parent=Phyra76006;constitutive=1;ensembl_phase=2;rank=3 scaffold_15 ensembl protein_coding_gene 467680 470237 . - . ID=Phyra94332;biotype=protein_coding;external_name=C_scaffold_15000035;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 467680 470237 . - . ID=Phyra94332;Parent=Phyra94332;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 467680 467865 . - 0 ID=Phyra94332;Parent=Phyra94332;rank=8 scaffold_15 . exon 467680 467865 . - . ID=Phyra94332.8;Parent=Phyra94332;constitutive=1;rank=8 scaffold_15 . CDS 467924 467992 . - 0 ID=Phyra94332;Parent=Phyra94332;rank=7 scaffold_15 . exon 467924 467992 . - . ID=Phyra94332.7;Parent=Phyra94332;constitutive=1;rank=7 scaffold_15 . CDS 468067 468255 . - 0 ID=Phyra94332;Parent=Phyra94332;rank=6 scaffold_15 . exon 468067 468255 . - . ID=Phyra94332.6;Parent=Phyra94332;constitutive=1;rank=6 scaffold_15 . CDS 468321 469007 . - 0 ID=Phyra94332;Parent=Phyra94332;rank=5 scaffold_15 . exon 468321 469007 . - . ID=Phyra94332.5;Parent=Phyra94332;constitutive=1;rank=5 scaffold_15 . CDS 469085 469170 . - 0 ID=Phyra94332;Parent=Phyra94332;rank=4 scaffold_15 . exon 469085 469170 . - . ID=Phyra94332.4;Parent=Phyra94332;constitutive=1;ensembl_phase=1;rank=4 scaffold_15 . CDS 469238 469245 . - 0 ID=Phyra94332;Parent=Phyra94332;rank=3 scaffold_15 . exon 469238 469245 . - . ID=Phyra94332.3;Parent=Phyra94332;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_15 . CDS 469579 469997 . - 0 ID=Phyra94332;Parent=Phyra94332;rank=2 scaffold_15 . exon 469579 469997 . - . ID=Phyra94332.2;Parent=Phyra94332;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_15 . CDS 470193 470237 . - 0 ID=Phyra94332;Parent=Phyra94332;rank=1 scaffold_15 . exon 470193 470237 . - . ID=Phyra94332.1;Parent=Phyra94332;constitutive=1;rank=1 scaffold_15 . repeat_region 482630 482677 . ? . description=trf scaffold_15 . biological_region 484448 484449 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 477222 478041 . + . ID=Phyra76007;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000141;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 477222 478041 . + . ID=Phyra76007;Parent=Phyra76007;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 477222 477411 . + 0 ID=Phyra76007;Parent=Phyra76007;rank=1 scaffold_15 . exon 477222 477411 . + . ID=Phyra76007.1;Parent=Phyra76007;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 477473 477731 . + 0 ID=Phyra76007;Parent=Phyra76007;rank=2 scaffold_15 . exon 477473 477731 . + . ID=Phyra76007.2;Parent=Phyra76007;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_15 . CDS 477792 478041 . + 0 ID=Phyra76007;Parent=Phyra76007;rank=3 scaffold_15 . exon 477792 478041 . + . ID=Phyra76007.3;Parent=Phyra76007;constitutive=1;ensembl_phase=2;rank=3 scaffold_15 ensembl protein_coding_gene 479716 481867 . - . ID=Phyra76008;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000142;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 479716 481867 . - . ID=Phyra76008;Parent=Phyra76008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 479716 479899 . - 0 ID=Phyra76008;Parent=Phyra76008;rank=8 scaffold_15 . exon 479716 479899 . - . ID=Phyra76008.8;Parent=Phyra76008;constitutive=1;ensembl_phase=2;rank=8 scaffold_15 . CDS 480021 480168 . - 0 ID=Phyra76008;Parent=Phyra76008;rank=7 scaffold_15 . exon 480021 480168 . - . ID=Phyra76008.7;Parent=Phyra76008;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_15 . CDS 480258 480330 . - 0 ID=Phyra76008;Parent=Phyra76008;rank=6 scaffold_15 . exon 480258 480330 . - . ID=Phyra76008.6;Parent=Phyra76008;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_15 . CDS 480357 480365 . - 0 ID=Phyra76008;Parent=Phyra76008;rank=5 scaffold_15 . exon 480357 480365 . - . ID=Phyra76008.5;Parent=Phyra76008;constitutive=1;rank=5 scaffold_15 . CDS 480744 480801 . - 0 ID=Phyra76008;Parent=Phyra76008;rank=4 scaffold_15 . exon 480744 480801 . - . ID=Phyra76008.4;Parent=Phyra76008;constitutive=1;ensembl_phase=2;rank=4 scaffold_15 . CDS 480882 481121 . - 0 ID=Phyra76008;Parent=Phyra76008;rank=3 scaffold_15 . exon 480882 481121 . - . ID=Phyra76008.3;Parent=Phyra76008;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_15 . CDS 481222 481480 . - 0 ID=Phyra76008;Parent=Phyra76008;rank=2 scaffold_15 . exon 481222 481480 . - . ID=Phyra76008.2;Parent=Phyra76008;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_15 . CDS 481570 481867 . - 0 ID=Phyra76008;Parent=Phyra76008;rank=1 scaffold_15 . exon 481570 481867 . - . ID=Phyra76008.1;Parent=Phyra76008;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 484368 486519 . + . ID=Phyra76009;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000143;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 484368 486519 . + . ID=Phyra76009;Parent=Phyra76009;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 484368 484665 . + 0 ID=Phyra76009;Parent=Phyra76009;rank=1 scaffold_15 . exon 484368 484665 . + . ID=Phyra76009.1;Parent=Phyra76009;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 484755 485013 . + 0 ID=Phyra76009;Parent=Phyra76009;rank=2 scaffold_15 . exon 484755 485013 . + . ID=Phyra76009.2;Parent=Phyra76009;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_15 . CDS 485114 485353 . + 0 ID=Phyra76009;Parent=Phyra76009;rank=3 scaffold_15 . exon 485114 485353 . + . ID=Phyra76009.3;Parent=Phyra76009;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_15 . CDS 485434 485491 . + 0 ID=Phyra76009;Parent=Phyra76009;rank=4 scaffold_15 . exon 485434 485491 . + . ID=Phyra76009.4;Parent=Phyra76009;constitutive=1;ensembl_phase=2;rank=4 scaffold_15 . CDS 485870 485878 . + 0 ID=Phyra76009;Parent=Phyra76009;rank=5 scaffold_15 . exon 485870 485878 . + . ID=Phyra76009.5;Parent=Phyra76009;constitutive=1;rank=5 scaffold_15 . CDS 485905 485977 . + 0 ID=Phyra76009;Parent=Phyra76009;rank=6 scaffold_15 . exon 485905 485977 . + . ID=Phyra76009.6;Parent=Phyra76009;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_15 . CDS 486067 486214 . + 0 ID=Phyra76009;Parent=Phyra76009;rank=7 scaffold_15 . exon 486067 486214 . + . ID=Phyra76009.7;Parent=Phyra76009;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_15 . CDS 486336 486519 . + 0 ID=Phyra76009;Parent=Phyra76009;rank=8 scaffold_15 . exon 486336 486519 . + . ID=Phyra76009.8;Parent=Phyra76009;constitutive=1;ensembl_phase=2;rank=8 scaffold_15 ensembl protein_coding_gene 492661 492864 . + . ID=Phyra42051;biotype=protein_coding;external_name=gwEuk.15.93.1;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 492661 492864 . + . ID=Phyra42051;Parent=Phyra42051;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 492661 492864 . + 0 ID=Phyra42051;Parent=Phyra42051;rank=1 scaffold_15 . exon 492661 492864 . + . ID=Phyra42051.1;Parent=Phyra42051;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 487120 489926 . + . ID=Phyra76010;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000144;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 487120 489926 . + . ID=Phyra76010;Parent=Phyra76010;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 487120 487670 . + 0 ID=Phyra76010;Parent=Phyra76010;rank=1 scaffold_15 . exon 487120 487670 . + . ID=Phyra76010.1;Parent=Phyra76010;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 487927 488001 . + 0 ID=Phyra76010;Parent=Phyra76010;rank=2 scaffold_15 . exon 487927 488001 . + . ID=Phyra76010.2;Parent=Phyra76010;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_15 . CDS 488366 488434 . + 0 ID=Phyra76010;Parent=Phyra76010;rank=3 scaffold_15 . exon 488366 488434 . + . ID=Phyra76010.3;Parent=Phyra76010;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_15 . CDS 488508 488689 . + 0 ID=Phyra76010;Parent=Phyra76010;rank=4 scaffold_15 . exon 488508 488689 . + . ID=Phyra76010.4;Parent=Phyra76010;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_15 . CDS 488860 489926 . + 0 ID=Phyra76010;Parent=Phyra76010;rank=5 scaffold_15 . exon 488860 489926 . + . ID=Phyra76010.5;Parent=Phyra76010;constitutive=1;ensembl_phase=1;rank=5 scaffold_15 ensembl protein_coding_gene 490416 491142 . + . ID=Phyra76011;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000145;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 490416 491142 . + . ID=Phyra76011;Parent=Phyra76011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 490416 490882 . + 0 ID=Phyra76011;Parent=Phyra76011;rank=1 scaffold_15 . exon 490416 490882 . + . ID=Phyra76011.1;Parent=Phyra76011;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 490965 491142 . + 0 ID=Phyra76011;Parent=Phyra76011;rank=2 scaffold_15 . exon 490965 491142 . + . ID=Phyra76011.2;Parent=Phyra76011;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 ensembl protein_coding_gene 495034 496461 . - . ID=Phyra76012;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000146;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 495034 496461 . - . ID=Phyra76012;Parent=Phyra76012;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 495034 496461 . - 0 ID=Phyra76012;Parent=Phyra76012;rank=1 scaffold_15 . exon 495034 496461 . - . ID=Phyra76012.1;Parent=Phyra76012;constitutive=1;rank=1 scaffold_15 . biological_region 497729 497731 0.999 - . logic_name=eponine scaffold_15 . repeat_region 500829 501042 . ? . description=trf scaffold_15 . repeat_region 501014 501442 . ? . description=trf scaffold_15 . repeat_region 501014 501442 . ? . description=trf scaffold_15 . repeat_region 501382 501607 . ? . description=trf scaffold_15 . repeat_region 501560 501966 . ? . description=trf scaffold_15 . repeat_region 501560 501968 . ? . description=trf scaffold_15 . repeat_region 502150 502321 . ? . description=trf scaffold_15 . biological_region 502945 502946 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 497985 498929 . - . ID=Phyra76013;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000147;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 497985 498929 . - . ID=Phyra76013;Parent=Phyra76013;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 497985 498929 . - 0 ID=Phyra76013;Parent=Phyra76013;rank=1 scaffold_15 . exon 497985 498929 . - . ID=Phyra76013.1;Parent=Phyra76013;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 500793 503210 . - . ID=Phyra76014;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000148;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 500793 503210 . - . ID=Phyra76014;Parent=Phyra76014;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 500793 503210 . - 0 ID=Phyra76014;Parent=Phyra76014;rank=1 scaffold_15 . exon 500793 503210 . - . ID=Phyra76014.1;Parent=Phyra76014;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 505000 506982 . - . ID=Phyra76015;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000149;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 505000 506982 . - . ID=Phyra76015;Parent=Phyra76015;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 505000 506982 . - 0 ID=Phyra76015;Parent=Phyra76015;rank=1 scaffold_15 . exon 505000 506982 . - . ID=Phyra76015.1;Parent=Phyra76015;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 507430 508908 . + . ID=Phyra76016;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000150;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 507430 508908 . + . ID=Phyra76016;Parent=Phyra76016;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 507430 508908 . + 0 ID=Phyra76016;Parent=Phyra76016;rank=1 scaffold_15 . exon 507430 508908 . + . ID=Phyra76016.1;Parent=Phyra76016;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 509548 511746 . + . ID=Phyra76017;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000151;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 509548 511746 . + . ID=Phyra76017;Parent=Phyra76017;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 509548 511746 . + 0 ID=Phyra76017;Parent=Phyra76017;rank=1 scaffold_15 . exon 509548 511746 . + . ID=Phyra76017.1;Parent=Phyra76017;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 511943 514185 . + . ID=Phyra76018;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000152;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 511943 514185 . + . ID=Phyra76018;Parent=Phyra76018;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 511943 512164 . + 0 ID=Phyra76018;Parent=Phyra76018;rank=1 scaffold_15 . exon 511943 512164 . + . ID=Phyra76018.1;Parent=Phyra76018;constitutive=1;rank=1 scaffold_15 . CDS 512226 512378 . + 0 ID=Phyra76018;Parent=Phyra76018;rank=2 scaffold_15 . exon 512226 512378 . + . ID=Phyra76018.2;Parent=Phyra76018;constitutive=1;rank=2 scaffold_15 . CDS 512442 512618 . + 0 ID=Phyra76018;Parent=Phyra76018;rank=3 scaffold_15 . exon 512442 512618 . + . ID=Phyra76018.3;Parent=Phyra76018;constitutive=1;rank=3 scaffold_15 . CDS 512668 512820 . + 0 ID=Phyra76018;Parent=Phyra76018;rank=4 scaffold_15 . exon 512668 512820 . + . ID=Phyra76018.4;Parent=Phyra76018;constitutive=1;rank=4 scaffold_15 . CDS 512896 514185 . + 0 ID=Phyra76018;Parent=Phyra76018;rank=5 scaffold_15 . exon 512896 514185 . + . ID=Phyra76018.5;Parent=Phyra76018;constitutive=1;rank=5 scaffold_15 ensembl protein_coding_gene 516235 517035 . - . ID=Phyra76019;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000153;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 516235 517035 . - . ID=Phyra76019;Parent=Phyra76019;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 516235 517035 . - 0 ID=Phyra76019;Parent=Phyra76019;rank=1 scaffold_15 . exon 516235 517035 . - . ID=Phyra76019.1;Parent=Phyra76019;constitutive=1;rank=1 scaffold_15 . biological_region 516442 516443 0.999 + . logic_name=eponine scaffold_15 . biological_region 516459 516464 0.999 + . logic_name=eponine scaffold_15 . biological_region 516549 516552 0.999 - . logic_name=eponine scaffold_15 . repeat_region 519615 519622 . ? . description=dust scaffold_15 . biological_region 520529 520530 0.999 + . logic_name=eponine scaffold_15 . biological_region 520617 520620 0.999 - . logic_name=eponine scaffold_15 . biological_region 520736 520738 0.999 + . logic_name=eponine scaffold_15 . repeat_region 524662 524748 . ? . description=dust scaffold_15 . repeat_region 524672 524735 . ? . description=trf scaffold_15 . repeat_region 524672 524748 . ? . description=trf scaffold_15 . repeat_region 524672 524748 . ? . description=trf scaffold_15 . biological_region 524955 524958 0.999 + . logic_name=eponine scaffold_15 . repeat_region 525329 525336 . ? . description=dust scaffold_15 ensembl protein_coding_gene 520044 520844 . + . ID=Phyra76020;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000154;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 520044 520844 . + . ID=Phyra76020;Parent=Phyra76020;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 520044 520844 . + 0 ID=Phyra76020;Parent=Phyra76020;rank=1 scaffold_15 . exon 520044 520844 . + . ID=Phyra76020.1;Parent=Phyra76020;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 523158 527639 . - . ID=Phyra76021;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000155;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 523158 527639 . - . ID=Phyra76021;Parent=Phyra76021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 523158 525170 . - 0 ID=Phyra76021;Parent=Phyra76021;rank=3 scaffold_15 . exon 523158 525170 . - . ID=Phyra76021.3;Parent=Phyra76021;constitutive=1;rank=3 scaffold_15 . CDS 525353 526727 . - 0 ID=Phyra76021;Parent=Phyra76021;rank=2 scaffold_15 . exon 525353 526727 . - . ID=Phyra76021.2;Parent=Phyra76021;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 526792 527639 . - 0 ID=Phyra76021;Parent=Phyra76021;rank=1 scaffold_15 . exon 526792 527639 . - . ID=Phyra76021.1;Parent=Phyra76021;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 528495 532330 . + . ID=Phyra76022;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000156;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 528495 532330 . + . ID=Phyra76022;Parent=Phyra76022;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 528495 528707 . + 0 ID=Phyra76022;Parent=Phyra76022;rank=1 scaffold_15 . exon 528495 528707 . + . ID=Phyra76022.1;Parent=Phyra76022;constitutive=1;rank=1 scaffold_15 . CDS 528779 532330 . + 0 ID=Phyra76022;Parent=Phyra76022;rank=2 scaffold_15 . exon 528779 532330 . + . ID=Phyra76022.2;Parent=Phyra76022;constitutive=1;rank=2 scaffold_15 ensembl protein_coding_gene 536197 539065 . + . ID=Phyra76023;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000157;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 536197 539065 . + . ID=Phyra76023;Parent=Phyra76023;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 536197 536262 . + 0 ID=Phyra76023;Parent=Phyra76023;rank=1 scaffold_15 . exon 536197 536262 . + . ID=Phyra76023.1;Parent=Phyra76023;constitutive=1;rank=1 scaffold_15 . CDS 536418 536501 . + 0 ID=Phyra76023;Parent=Phyra76023;rank=2 scaffold_15 . CDS 536541 536816 . + 0 ID=Phyra76023;Parent=Phyra76023;rank=3 scaffold_15 . CDS 536890 536985 . + 0 ID=Phyra76023;Parent=Phyra76023;rank=4 scaffold_15 . CDS 537083 539065 . + 0 ID=Phyra76023;Parent=Phyra76023;rank=5 scaffold_15 . biological_region 540605 540606 0.999 + . logic_name=eponine scaffold_15 . repeat_region 542407 542414 . ? . description=dust scaffold_15 . repeat_region 543591 543601 . ? . description=dust scaffold_15 . biological_region 545120 545126 0.999 + . logic_name=eponine scaffold_15 . exon 536418 536501 . + . ID=Phyra76023.2;Parent=Phyra76023;constitutive=1;rank=2 scaffold_15 . exon 536541 536816 . + . ID=Phyra76023.3;Parent=Phyra76023;constitutive=1;rank=3 scaffold_15 . exon 536890 536985 . + . ID=Phyra76023.4;Parent=Phyra76023;constitutive=1;rank=4 scaffold_15 . exon 537083 539065 . + . ID=Phyra76023.5;Parent=Phyra76023;constitutive=1;rank=5 scaffold_15 ensembl protein_coding_gene 541477 542265 . - . ID=Phyra76024;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000158;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 541477 542265 . - . ID=Phyra76024;Parent=Phyra76024;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 541477 542265 . - 0 ID=Phyra76024;Parent=Phyra76024;rank=1 scaffold_15 . exon 541477 542265 . - . ID=Phyra76024.1;Parent=Phyra76024;constitutive=1;rank=1 scaffold_15 . repeat_region 555560 557362 . ? . description=dust scaffold_15 . biological_region 558648 558652 0.999 - . logic_name=eponine scaffold_15 . repeat_region 560631 560638 . ? . description=dust scaffold_15 . biological_region 561744 561749 0.999 - . logic_name=eponine scaffold_15 . biological_region 562261 562263 0.999 + . logic_name=eponine scaffold_15 . biological_region 562280 562282 0.999 + . logic_name=eponine scaffold_15 . biological_region 562315 562317 0.999 + . logic_name=eponine scaffold_15 . biological_region 562344 562347 0.999 - . logic_name=eponine scaffold_15 . biological_region 562344 562349 0.999 + . logic_name=eponine scaffold_15 . biological_region 562393 562397 0.999 - . logic_name=eponine scaffold_15 . biological_region 562414 562425 0.999 - . logic_name=eponine scaffold_15 . biological_region 562508 562516 0.999 - . logic_name=eponine scaffold_15 . biological_region 562534 562540 0.999 - . logic_name=eponine scaffold_15 . biological_region 563426 563430 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 561088 561798 . - . ID=Phyra76025;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000159;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 561088 561798 . - . ID=Phyra76025;Parent=Phyra76025;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 561088 561798 . - 0 ID=Phyra76025;Parent=Phyra76025;rank=1 scaffold_15 . exon 561088 561798 . - . ID=Phyra76025.1;Parent=Phyra76025;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 562086 563495 . + . ID=Phyra76026;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000160;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 562086 563495 . + . ID=Phyra76026;Parent=Phyra76026;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 562086 563495 . + 0 ID=Phyra76026;Parent=Phyra76026;rank=1 scaffold_15 . exon 562086 563495 . + . ID=Phyra76026.1;Parent=Phyra76026;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 564108 565640 . + . ID=Phyra76027;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000161;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 564108 565640 . + . ID=Phyra76027;Parent=Phyra76027;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 564108 565640 . + 0 ID=Phyra76027;Parent=Phyra76027;rank=1 scaffold_15 . exon 564108 565640 . + . ID=Phyra76027.1;Parent=Phyra76027;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 569886 571179 . + . ID=Phyra76028;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000162;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 569886 571179 . + . ID=Phyra76028;Parent=Phyra76028;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 569886 571100 . + 0 ID=Phyra76028;Parent=Phyra76028;rank=1 scaffold_15 . exon 569886 571100 . + . ID=Phyra76028.1;Parent=Phyra76028;constitutive=1;rank=1 scaffold_15 . CDS 571168 571179 . + 0 ID=Phyra76028;Parent=Phyra76028;rank=2 scaffold_15 . exon 571168 571179 . + . ID=Phyra76028.2;Parent=Phyra76028;constitutive=1;rank=2 scaffold_15 ensembl protein_coding_gene 571558 572065 . - . ID=Phyra76029;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000163;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 571558 572065 . - . ID=Phyra76029;Parent=Phyra76029;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 571558 571869 . - 0 ID=Phyra76029;Parent=Phyra76029;rank=2 scaffold_15 . exon 571558 571869 . - . ID=Phyra76029.2;Parent=Phyra76029;constitutive=1;rank=2 scaffold_15 . CDS 571937 572065 . - 0 ID=Phyra76029;Parent=Phyra76029;rank=1 scaffold_15 . exon 571937 572065 . - . ID=Phyra76029.1;Parent=Phyra76029;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 572192 573164 . + . ID=Phyra76030;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000164;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 572192 573164 . + . ID=Phyra76030;Parent=Phyra76030;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 572192 573058 . + 0 ID=Phyra76030;Parent=Phyra76030;rank=1 scaffold_15 . exon 572192 573058 . + . ID=Phyra76030.1;Parent=Phyra76030;constitutive=1;rank=1 scaffold_15 . CDS 573156 573164 . + 0 ID=Phyra76030;Parent=Phyra76030;rank=2 scaffold_15 . exon 573156 573164 . + . ID=Phyra76030.2;Parent=Phyra76030;constitutive=1;rank=2 scaffold_15 ensembl protein_coding_gene 575110 576469 . + . ID=Phyra94337;biotype=protein_coding;external_name=C_scaffold_15000040;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 575110 576469 . + . ID=Phyra94337;Parent=Phyra94337;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 575110 575264 . + 0 ID=Phyra94337;Parent=Phyra94337;rank=1 scaffold_15 . exon 575110 575264 . + . ID=Phyra94337.1;Parent=Phyra94337;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 575368 575400 . + 0 ID=Phyra94337;Parent=Phyra94337;rank=2 scaffold_15 . exon 575368 575400 . + . ID=Phyra94337.2;Parent=Phyra94337;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_15 . CDS 575466 575551 . + 0 ID=Phyra94337;Parent=Phyra94337;rank=3 scaffold_15 . exon 575466 575551 . + . ID=Phyra94337.3;Parent=Phyra94337;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_15 . CDS 575750 576077 . + 0 ID=Phyra94337;Parent=Phyra94337;rank=4 scaffold_15 . exon 575750 576077 . + . ID=Phyra94337.4;Parent=Phyra94337;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_15 . CDS 576204 576394 . + 0 ID=Phyra94337;Parent=Phyra94337;rank=5 scaffold_15 . CDS 576462 576469 . + 0 ID=Phyra94337;Parent=Phyra94337;rank=6 scaffold_15 . biological_region 578608 578615 0.999 + . logic_name=eponine scaffold_15 . biological_region 581392 581393 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 582466 583092 . - . ID=Phyra42073;biotype=protein_coding;external_name=gwEuk.15.115.1;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 582466 583092 . - . ID=Phyra42073;Parent=Phyra42073;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 582466 583092 . - 0 ID=Phyra42073;Parent=Phyra42073;rank=1 scaffold_15 . exon 582466 583092 . - . ID=Phyra42073.1;Parent=Phyra42073;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 585062 586261 . + . ID=Phyra42080;biotype=protein_coding;external_name=gwEuk.15.122.1;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 585062 586261 . + . ID=Phyra42080;Parent=Phyra42080;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 585062 586261 . + 0 ID=Phyra42080;Parent=Phyra42080;rank=1 scaffold_15 . exon 585062 586261 . + . ID=Phyra42080.1;Parent=Phyra42080;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 578425 579810 . + . ID=Phyra71379;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_15000008;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 578425 579810 . + . ID=Phyra71379;Parent=Phyra71379;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 578425 579810 . + 0 ID=Phyra71379;Parent=Phyra71379;rank=1 scaffold_15 . exon 578425 579810 . + . ID=Phyra71379.1;Parent=Phyra71379;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 580584 581715 . + . ID=Phyra71380;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_15000009;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 580584 581715 . + . ID=Phyra71380;Parent=Phyra71380;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 580584 580777 . + 0 ID=Phyra71380;Parent=Phyra71380;rank=1 scaffold_15 . exon 580584 580777 . + . ID=Phyra71380.1;Parent=Phyra71380;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 580854 580944 . + 0 ID=Phyra71380;Parent=Phyra71380;rank=2 scaffold_15 . exon 580854 580944 . + . ID=Phyra71380.2;Parent=Phyra71380;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 581014 581715 . + 0 ID=Phyra71380;Parent=Phyra71380;rank=3 scaffold_15 . exon 581014 581715 . + . ID=Phyra71380.3;Parent=Phyra71380;constitutive=1;rank=3 scaffold_15 ensembl protein_coding_gene 576989 578200 . - . ID=Phyra76031;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000165;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 576989 578200 . - . ID=Phyra76031;Parent=Phyra76031;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 576989 577973 . - 0 ID=Phyra76031;Parent=Phyra76031;rank=2 scaffold_15 . exon 576989 577973 . - . ID=Phyra76031.2;Parent=Phyra76031;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 578064 578200 . - 0 ID=Phyra76031;Parent=Phyra76031;rank=1 scaffold_15 . exon 578064 578200 . - . ID=Phyra76031.1;Parent=Phyra76031;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . exon 576204 576394 . + . ID=Phyra94337.5;Parent=Phyra94337;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_15 . exon 576462 576469 . + . ID=Phyra94337.6;Parent=Phyra94337;constitutive=1;ensembl_phase=1;rank=6 scaffold_15 ensembl protein_coding_gene 589082 589855 . + . ID=Phyra76036;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000170;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 589082 589855 . + . ID=Phyra76036;Parent=Phyra76036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 589082 589855 . + 0 ID=Phyra76036;Parent=Phyra76036;rank=1 scaffold_15 . exon 589082 589855 . + . ID=Phyra76036.1;Parent=Phyra76036;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 590069 593297 . + . ID=Phyra76037;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000171;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 590069 593297 . + . ID=Phyra76037;Parent=Phyra76037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 590069 593225 . + 0 ID=Phyra76037;Parent=Phyra76037;rank=1 scaffold_15 . exon 590069 593225 . + . ID=Phyra76037.1;Parent=Phyra76037;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 593248 593297 . + 0 ID=Phyra76037;Parent=Phyra76037;rank=2 scaffold_15 . exon 593248 593297 . + . ID=Phyra76037.2;Parent=Phyra76037;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 ensembl protein_coding_gene 595337 598453 . + . ID=Phyra76038;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000172;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 595337 598453 . + . ID=Phyra76038;Parent=Phyra76038;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 595337 598453 . + 0 ID=Phyra76038;Parent=Phyra76038;rank=1 scaffold_15 . exon 595337 598453 . + . ID=Phyra76038.1;Parent=Phyra76038;constitutive=1;rank=1 scaffold_15 . repeat_region 597200 597229 . ? . description=trf scaffold_15 . biological_region 600339 600341 0.999 + . logic_name=eponine scaffold_15 . repeat_region 601194 601228 . ? . description=trf scaffold_15 . repeat_region 604711 604756 . ? . description=dust scaffold_15 ensembl protein_coding_gene 601822 603393 . - . ID=Phyra76039;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000173;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 601822 603393 . - . ID=Phyra76039;Parent=Phyra76039;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 601822 603393 . - 0 ID=Phyra76039;Parent=Phyra76039;rank=1 scaffold_15 . exon 601822 603393 . - . ID=Phyra76039.1;Parent=Phyra76039;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 606993 608331 . - . ID=Phyra76040;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000174;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 606993 608331 . - . ID=Phyra76040;Parent=Phyra76040;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 606993 607380 . - 0 ID=Phyra76040;Parent=Phyra76040;rank=5 scaffold_15 . exon 606993 607380 . - . ID=Phyra76040.5;Parent=Phyra76040;constitutive=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 607471 607586 . - 0 ID=Phyra76040;Parent=Phyra76040;rank=4 scaffold_15 . exon 607471 607586 . - . ID=Phyra76040.4;Parent=Phyra76040;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_15 . CDS 607770 607790 . - 0 ID=Phyra76040;Parent=Phyra76040;rank=3 scaffold_15 . exon 607770 607790 . - . ID=Phyra76040.3;Parent=Phyra76040;constitutive=1;rank=3 scaffold_15 . CDS 608009 608064 . - 0 ID=Phyra76040;Parent=Phyra76040;rank=2 scaffold_15 . exon 608009 608064 . - . ID=Phyra76040.2;Parent=Phyra76040;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 608247 608331 . - 0 ID=Phyra76040;Parent=Phyra76040;rank=1 scaffold_15 . exon 608247 608331 . - . ID=Phyra76040.1;Parent=Phyra76040;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . repeat_region 615300 615745 . ? . description=dust scaffold_15 . repeat_region 616321 616372 . ? . description=trf scaffold_15 . repeat_region 616322 616377 . ? . description=trf scaffold_15 . repeat_region 616437 619638 . ? . description=dust scaffold_15 . biological_region 619695 619698 0.999 + . logic_name=eponine scaffold_15 . repeat_region 622951 622962 . ? . description=dust scaffold_15 . repeat_region 623254 623274 . ? . description=trf scaffold_15 . repeat_region 623735 623772 . ? . description=dust scaffold_15 . repeat_region 624318 626148 . ? . description=dust scaffold_15 ensembl protein_coding_gene 628469 628927 . + . ID=Phyra76041;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000175;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 628469 628927 . + . ID=Phyra76041;Parent=Phyra76041;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 628469 628927 . + 0 ID=Phyra76041;Parent=Phyra76041;rank=1 scaffold_15 . exon 628469 628927 . + . ID=Phyra76041.1;Parent=Phyra76041;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 629356 631580 . - . ID=Phyra76042;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000176;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 629356 631580 . - . ID=Phyra76042;Parent=Phyra76042;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 629356 629415 . - 0 ID=Phyra76042;Parent=Phyra76042;rank=3 scaffold_15 . exon 629356 629415 . - . ID=Phyra76042.3;Parent=Phyra76042;constitutive=1;rank=3 scaffold_15 . CDS 629587 629602 . - 0 ID=Phyra76042;Parent=Phyra76042;rank=2 scaffold_15 . exon 629587 629602 . - . ID=Phyra76042.2;Parent=Phyra76042;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 630553 631580 . - 0 ID=Phyra76042;Parent=Phyra76042;rank=1 scaffold_15 . exon 630553 631580 . - . ID=Phyra76042.1;Parent=Phyra76042;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . biological_region 636830 636831 0.999 + . logic_name=eponine scaffold_15 . repeat_region 638638 638645 . ? . description=dust scaffold_15 . repeat_region 643661 643707 . ? . description=trf scaffold_15 . biological_region 644461 644465 0.999 - . logic_name=eponine scaffold_15 . repeat_region 644943 644950 . ? . description=dust scaffold_15 . repeat_region 645420 645427 . ? . description=dust scaffold_15 ensembl protein_coding_gene 641266 641526 . - . ID=Phyra42085;biotype=protein_coding;external_name=gwEuk.15.127.1;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 641266 641526 . - . ID=Phyra42085;Parent=Phyra42085;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 641266 641526 . - 0 ID=Phyra42085;Parent=Phyra42085;rank=1 scaffold_15 . exon 641266 641526 . - . ID=Phyra42085.1;Parent=Phyra42085;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 642259 642546 . - . ID=Phyra42087;biotype=protein_coding;external_name=gwEuk.15.129.1;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 642259 642546 . - . ID=Phyra42087;Parent=Phyra42087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 642259 642546 . - 0 ID=Phyra42087;Parent=Phyra42087;rank=1 scaffold_15 . exon 642259 642546 . - . ID=Phyra42087.1;Parent=Phyra42087;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 635934 637433 . - . ID=Phyra76043;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000177;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 635934 637433 . - . ID=Phyra76043;Parent=Phyra76043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 635934 637433 . - 0 ID=Phyra76043;Parent=Phyra76043;rank=1 scaffold_15 . exon 635934 637433 . - . ID=Phyra76043.1;Parent=Phyra76043;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 639117 640010 . + . ID=Phyra76044;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000178;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 639117 640010 . + . ID=Phyra76044;Parent=Phyra76044;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 639117 640010 . + 0 ID=Phyra76044;Parent=Phyra76044;rank=1 scaffold_15 . exon 639117 640010 . + . ID=Phyra76044.1;Parent=Phyra76044;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 643044 644885 . - . ID=Phyra76045;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000179;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 643044 644885 . - . ID=Phyra76045;Parent=Phyra76045;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 643044 643057 . - 0 ID=Phyra76045;Parent=Phyra76045;rank=3 scaffold_15 . exon 643044 643057 . - . ID=Phyra76045.3;Parent=Phyra76045;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 643134 644414 . - 0 ID=Phyra76045;Parent=Phyra76045;rank=2 scaffold_15 . exon 643134 644414 . - . ID=Phyra76045.2;Parent=Phyra76045;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 644519 644885 . - 0 ID=Phyra76045;Parent=Phyra76045;rank=1 scaffold_15 . exon 644519 644885 . - . ID=Phyra76045.1;Parent=Phyra76045;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 647951 648899 . + . ID=Phyra76046;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_15000180;logic_name=jgi_phyra1 scaffold_15 ensembl transcript 647951 648899 . + . ID=Phyra76046;Parent=Phyra76046;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_15 . CDS 647951 648755 . + 0 ID=Phyra76046;Parent=Phyra76046;rank=1 scaffold_15 . exon 647951 648755 . + . ID=Phyra76046.1;Parent=Phyra76046;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 648838 648899 . + 0 ID=Phyra76046;Parent=Phyra76046;rank=2 scaffold_15 . exon 648838 648899 . + . ID=Phyra76046.2;Parent=Phyra76046;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_14 1 678508 scaffold_14 . repeat_region 247 294 . ? . description=trf scaffold_14 . repeat_region 3445 3461 . ? . description=dust scaffold_14 . biological_region 6509 6511 0.999 - . logic_name=eponine scaffold_14 . biological_region 9338 9345 0.999 - . logic_name=eponine scaffold_14 ensembl tRNA_gene 600 671 . - . ID=EPrPRAG00000000073;biotype=tRNA;description=tRNA-Thr for anticodon UGU [Source:TRNASCAN_SE%3BAcc:tRNA-Thr];external_name=tRNA-Thr;logic_name=ncrna_eg scaffold_14 ensembl transcript 600 671 . - . ID=EPrPRAT00000000073;Parent=EPrPRAG00000000073;biotype=tRNA;logic_name=ncrna_eg scaffold_14 . exon 600 671 . - . ID=EPrPRAE00000000073;Parent=EPrPRAT00000000073;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 4546 5152 . + . ID=Phyra75639;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000001;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 4546 5152 . + . ID=Phyra75639;Parent=Phyra75639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 4546 5022 . + 0 ID=Phyra75639;Parent=Phyra75639;rank=1 scaffold_14 . exon 4546 5022 . + . ID=Phyra75639.1;Parent=Phyra75639;constitutive=1;rank=1 scaffold_14 . CDS 5096 5152 . + 0 ID=Phyra75639;Parent=Phyra75639;rank=2 scaffold_14 . exon 5096 5152 . + . ID=Phyra75639.2;Parent=Phyra75639;constitutive=1;rank=2 scaffold_14 ensembl protein_coding_gene 5314 6194 . - . ID=Phyra75640;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000002;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 5314 6194 . - . ID=Phyra75640;Parent=Phyra75640;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 5314 5679 . - 0 ID=Phyra75640;Parent=Phyra75640;rank=3 scaffold_14 . exon 5314 5679 . - . ID=Phyra75640.3;Parent=Phyra75640;constitutive=1;rank=3 scaffold_14 . CDS 5740 5929 . - 0 ID=Phyra75640;Parent=Phyra75640;rank=2 scaffold_14 . exon 5740 5929 . - . ID=Phyra75640.2;Parent=Phyra75640;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 5986 6194 . - 0 ID=Phyra75640;Parent=Phyra75640;rank=1 scaffold_14 . exon 5986 6194 . - . ID=Phyra75640.1;Parent=Phyra75640;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 6940 14904 . + . ID=Phyra94228;biotype=protein_coding;external_name=C_scaffold_14000001;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 6940 14904 . + . ID=Phyra94228;Parent=Phyra94228;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 6940 7216 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=1 scaffold_14 . exon 6940 7216 . + . ID=Phyra94228.1;Parent=Phyra94228;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 7268 7595 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=2 scaffold_14 . exon 7268 7595 . + . ID=Phyra94228.2;Parent=Phyra94228;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_14 . CDS 7680 7921 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=3 scaffold_14 . exon 7680 7921 . + . ID=Phyra94228.3;Parent=Phyra94228;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 8132 8297 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=4 scaffold_14 . exon 8132 8297 . + . ID=Phyra94228.4;Parent=Phyra94228;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_14 . CDS 8562 8777 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=5 scaffold_14 . exon 8562 8777 . + . ID=Phyra94228.5;Parent=Phyra94228;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_14 . CDS 9270 9351 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=6 scaffold_14 . exon 9270 9351 . + . ID=Phyra94228.6;Parent=Phyra94228;constitutive=1;ensembl_phase=2;rank=6 scaffold_14 . CDS 9418 9589 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=7 scaffold_14 . exon 9418 9589 . + . ID=Phyra94228.7;Parent=Phyra94228;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_14 . CDS 9674 9849 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=8 scaffold_14 . exon 9674 9849 . + . ID=Phyra94228.8;Parent=Phyra94228;constitutive=1;ensembl_phase=1;rank=8 scaffold_14 . CDS 10145 10200 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=9 scaffold_14 . CDS 10257 10445 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=10 scaffold_14 . CDS 10626 10774 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=11 scaffold_14 . CDS 10928 11114 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=12 scaffold_14 . CDS 11370 11693 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=13 scaffold_14 . CDS 11742 13022 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=14 scaffold_14 . CDS 13047 13395 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=15 scaffold_14 . CDS 13447 13625 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=16 scaffold_14 . CDS 13656 14276 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=17 scaffold_14 . CDS 14313 14582 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=18 scaffold_14 . CDS 14676 14904 . + 0 ID=Phyra94228;Parent=Phyra94228;rank=19 scaffold_14 ensembl protein_coding_gene 15846 16877 . + . ID=Phyra41695;biotype=protein_coding;external_name=gwEuk.14.228.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 15846 16877 . + . ID=Phyra41695;Parent=Phyra41695;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 15846 16877 . + 0 ID=Phyra41695;Parent=Phyra41695;rank=1 scaffold_14 . exon 15846 16877 . + . ID=Phyra41695.1;Parent=Phyra41695;constitutive=1;rank=1 scaffold_14 . exon 10145 10200 . + . ID=Phyra94228.9;Parent=Phyra94228;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_14 . exon 10257 10445 . + . ID=Phyra94228.10;Parent=Phyra94228;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_14 . exon 10626 10774 . + . ID=Phyra94228.11;Parent=Phyra94228;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_14 . exon 10928 11114 . + . ID=Phyra94228.12;Parent=Phyra94228;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_14 . exon 11370 11693 . + . ID=Phyra94228.13;Parent=Phyra94228;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=13 scaffold_14 . exon 11742 13022 . + . ID=Phyra94228.14;Parent=Phyra94228;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=14 scaffold_14 . exon 13047 13395 . + . ID=Phyra94228.15;Parent=Phyra94228;constitutive=1;ensembl_phase=2;rank=15 scaffold_14 . exon 13447 13625 . + . ID=Phyra94228.16;Parent=Phyra94228;constitutive=1;ensembl_end_phase=2;rank=16 scaffold_14 . exon 13656 14276 . + . ID=Phyra94228.17;Parent=Phyra94228;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=17 scaffold_14 . exon 14313 14582 . + . ID=Phyra94228.18;Parent=Phyra94228;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=18 scaffold_14 . exon 14676 14904 . + . ID=Phyra94228.19;Parent=Phyra94228;constitutive=1;ensembl_phase=2;rank=19 scaffold_14 ensembl protein_coding_gene 17027 18532 . - . ID=Phyra94231;biotype=protein_coding;external_name=C_scaffold_14000004;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 17027 18532 . - . ID=Phyra94231;Parent=Phyra94231;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 17027 18532 . - 0 ID=Phyra94231;Parent=Phyra94231;rank=1 scaffold_14 . exon 17027 18532 . - . ID=Phyra94231.1;Parent=Phyra94231;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 19573 19953 . + . ID=Phyra94233;biotype=protein_coding;external_name=C_scaffold_14000006;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 19573 19953 . + . ID=Phyra94233;Parent=Phyra94233;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 19573 19953 . + 0 ID=Phyra94233;Parent=Phyra94233;rank=1 scaffold_14 . exon 19573 19953 . + . ID=Phyra94233.1;Parent=Phyra94233;constitutive=1;rank=1 scaffold_14 . repeat_region 21249 21312 . ? . description=dust scaffold_14 . biological_region 22173 22178 0.999 + . logic_name=eponine scaffold_14 . repeat_region 25239 25286 . ? . description=trf scaffold_14 ensembl protein_coding_gene 20697 21633 . - . ID=Phyra75646;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000008;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 20697 21633 . - . ID=Phyra75646;Parent=Phyra75646;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 20697 20723 . - 0 ID=Phyra75646;Parent=Phyra75646;rank=2 scaffold_14 . exon 20697 20723 . - . ID=Phyra75646.2;Parent=Phyra75646;constitutive=1;rank=2 scaffold_14 . CDS 20782 21633 . - 0 ID=Phyra75646;Parent=Phyra75646;rank=1 scaffold_14 . exon 20782 21633 . - . ID=Phyra75646.1;Parent=Phyra75646;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 21826 23466 . + . ID=Phyra75647;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000009;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 21826 23466 . + . ID=Phyra75647;Parent=Phyra75647;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 21826 21975 . + 0 ID=Phyra75647;Parent=Phyra75647;rank=1 scaffold_14 . exon 21826 21975 . + . ID=Phyra75647.1;Parent=Phyra75647;constitutive=1;rank=1 scaffold_14 . CDS 22048 23466 . + 0 ID=Phyra75647;Parent=Phyra75647;rank=2 scaffold_14 . exon 22048 23466 . + . ID=Phyra75647.2;Parent=Phyra75647;constitutive=1;rank=2 scaffold_14 ensembl protein_coding_gene 23611 24030 . - . ID=Phyra75648;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000010;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 23611 24030 . - . ID=Phyra75648;Parent=Phyra75648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 23611 24030 . - 0 ID=Phyra75648;Parent=Phyra75648;rank=1 scaffold_14 . exon 23611 24030 . - . ID=Phyra75648.1;Parent=Phyra75648;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 24332 24776 . + . ID=Phyra94234;biotype=protein_coding;external_name=C_scaffold_14000007;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 24332 24776 . + . ID=Phyra94234;Parent=Phyra94234;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 24332 24334 . + 0 ID=Phyra94234;Parent=Phyra94234;rank=1 scaffold_14 . exon 24332 24334 . + . ID=Phyra94234.1;Parent=Phyra94234;constitutive=1;rank=1 scaffold_14 . CDS 24426 24512 . + 0 ID=Phyra94234;Parent=Phyra94234;rank=2 scaffold_14 . exon 24426 24512 . + . ID=Phyra94234.2;Parent=Phyra94234;constitutive=1;rank=2 scaffold_14 . CDS 24618 24776 . + 0 ID=Phyra94234;Parent=Phyra94234;rank=3 scaffold_14 . exon 24618 24776 . + . ID=Phyra94234.3;Parent=Phyra94234;constitutive=1;rank=3 scaffold_14 ensembl protein_coding_gene 25083 26445 . - . ID=Phyra94235;biotype=protein_coding;external_name=C_scaffold_14000008;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 25083 26445 . - . ID=Phyra94235;Parent=Phyra94235;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 25083 25232 . - 0 ID=Phyra94235;Parent=Phyra94235;rank=5 scaffold_14 . exon 25083 25232 . - . ID=Phyra94235.5;Parent=Phyra94235;constitutive=1;rank=5 scaffold_14 . CDS 25354 25431 . - 0 ID=Phyra94235;Parent=Phyra94235;rank=4 scaffold_14 . exon 25354 25431 . - . ID=Phyra94235.4;Parent=Phyra94235;constitutive=1;rank=4 scaffold_14 . CDS 25520 25594 . - 0 ID=Phyra94235;Parent=Phyra94235;rank=3 scaffold_14 . exon 25520 25594 . - . ID=Phyra94235.3;Parent=Phyra94235;constitutive=1;rank=3 scaffold_14 . CDS 25682 25760 . - 0 ID=Phyra94235;Parent=Phyra94235;rank=2 scaffold_14 . exon 25682 25760 . - . ID=Phyra94235.2;Parent=Phyra94235;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 25832 26445 . - 0 ID=Phyra94235;Parent=Phyra94235;rank=1 scaffold_14 . exon 25832 26445 . - . ID=Phyra94235.1;Parent=Phyra94235;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 36433 36651 . + . ID=Phyra41711;biotype=protein_coding;external_name=gwEuk.14.244.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 36433 36651 . + . ID=Phyra41711;Parent=Phyra41711;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 36433 36651 . + 0 ID=Phyra41711;Parent=Phyra41711;rank=1 scaffold_14 . exon 36433 36651 . + . ID=Phyra41711.1;Parent=Phyra41711;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 34469 35011 . - . ID=Phyra71336;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000001;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 34469 35011 . - . ID=Phyra71336;Parent=Phyra71336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 34469 35011 . - 0 ID=Phyra71336;Parent=Phyra71336;rank=1 scaffold_14 . exon 34469 35011 . - . ID=Phyra71336.1;Parent=Phyra71336;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 35218 36090 . + . ID=Phyra71337;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000002;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 35218 36090 . + . ID=Phyra71337;Parent=Phyra71337;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 35218 35406 . + 0 ID=Phyra71337;Parent=Phyra71337;rank=1 scaffold_14 . exon 35218 35406 . + . ID=Phyra71337.1;Parent=Phyra71337;constitutive=1;rank=1 scaffold_14 . CDS 35774 35873 . + 0 ID=Phyra71337;Parent=Phyra71337;rank=2 scaffold_14 . exon 35774 35873 . + . ID=Phyra71337.2;Parent=Phyra71337;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_14 . CDS 35945 36090 . + 0 ID=Phyra71337;Parent=Phyra71337;rank=3 scaffold_14 . exon 35945 36090 . + . ID=Phyra71337.3;Parent=Phyra71337;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 ensembl protein_coding_gene 31071 32730 . - . ID=Phyra75650;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000012;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 31071 32730 . - . ID=Phyra75650;Parent=Phyra75650;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 31071 31097 . - 0 ID=Phyra75650;Parent=Phyra75650;rank=4 scaffold_14 . exon 31071 31097 . - . ID=Phyra75650.4;Parent=Phyra75650;constitutive=1;rank=4 scaffold_14 . CDS 31288 31857 . - 0 ID=Phyra75650;Parent=Phyra75650;rank=3 scaffold_14 . exon 31288 31857 . - . ID=Phyra75650.3;Parent=Phyra75650;constitutive=1;rank=3 scaffold_14 . CDS 32247 32584 . - 0 ID=Phyra75650;Parent=Phyra75650;rank=2 scaffold_14 . exon 32247 32584 . - . ID=Phyra75650.2;Parent=Phyra75650;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 32634 32730 . - 0 ID=Phyra75650;Parent=Phyra75650;rank=1 scaffold_14 . exon 32634 32730 . - . ID=Phyra75650.1;Parent=Phyra75650;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 33248 34283 . + . ID=Phyra75651;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000013;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 33248 34283 . + . ID=Phyra75651;Parent=Phyra75651;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 33248 33761 . + 0 ID=Phyra75651;Parent=Phyra75651;rank=1 scaffold_14 . exon 33248 33761 . + . ID=Phyra75651.1;Parent=Phyra75651;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 33844 34283 . + 0 ID=Phyra75651;Parent=Phyra75651;rank=2 scaffold_14 . exon 33844 34283 . + . ID=Phyra75651.2;Parent=Phyra75651;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 ensembl protein_coding_gene 37299 38614 . - . ID=Phyra75655;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000017;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 37299 38614 . - . ID=Phyra75655;Parent=Phyra75655;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 37299 37608 . - 0 ID=Phyra75655;Parent=Phyra75655;rank=5 scaffold_14 . exon 37299 37608 . - . ID=Phyra75655.5;Parent=Phyra75655;constitutive=1;ensembl_phase=2;rank=5 scaffold_14 . CDS 37678 37764 . - 0 ID=Phyra75655;Parent=Phyra75655;rank=4 scaffold_14 . exon 37678 37764 . - . ID=Phyra75655.4;Parent=Phyra75655;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_14 . CDS 37832 38210 . - 0 ID=Phyra75655;Parent=Phyra75655;rank=3 scaffold_14 . exon 37832 38210 . - . ID=Phyra75655.3;Parent=Phyra75655;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_14 . CDS 38290 38432 . - 0 ID=Phyra75655;Parent=Phyra75655;rank=2 scaffold_14 . exon 38290 38432 . - . ID=Phyra75655.2;Parent=Phyra75655;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 38496 38614 . - 0 ID=Phyra75655;Parent=Phyra75655;rank=1 scaffold_14 . exon 38496 38614 . - . ID=Phyra75655.1;Parent=Phyra75655;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 39613 41154 . + . ID=Phyra75656;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000018;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 39613 41154 . + . ID=Phyra75656;Parent=Phyra75656;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 39613 41154 . + 0 ID=Phyra75656;Parent=Phyra75656;rank=1 scaffold_14 . exon 39613 41154 . + . ID=Phyra75656.1;Parent=Phyra75656;constitutive=1;rank=1 scaffold_14 . biological_region 41761 41763 0.999 - . logic_name=eponine scaffold_14 . biological_region 43438 43442 0.999 + . logic_name=eponine scaffold_14 . biological_region 46790 46791 0.999 + . logic_name=eponine scaffold_14 . repeat_region 46816 46846 . ? . description=dust scaffold_14 . biological_region 47968 47974 0.999 - . logic_name=eponine scaffold_14 . biological_region 48028 48030 0.999 + . logic_name=eponine scaffold_14 . biological_region 48038 48041 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 43839 44912 . - . ID=Phyra71338;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000003;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 43839 44912 . - . ID=Phyra71338;Parent=Phyra71338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 43839 44912 . - 0 ID=Phyra71338;Parent=Phyra71338;rank=1 scaffold_14 . exon 43839 44912 . - . ID=Phyra71338.1;Parent=Phyra71338;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 45422 46516 . - . ID=Phyra71339;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000004;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 45422 46516 . - . ID=Phyra71339;Parent=Phyra71339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 45422 46516 . - 0 ID=Phyra71339;Parent=Phyra71339;rank=1 scaffold_14 . exon 45422 46516 . - . ID=Phyra71339.1;Parent=Phyra71339;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 41659 43609 . + . ID=Phyra75657;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000019;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 41659 43609 . + . ID=Phyra75657;Parent=Phyra75657;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 41659 41873 . + 0 ID=Phyra75657;Parent=Phyra75657;rank=1 scaffold_14 . exon 41659 41873 . + . ID=Phyra75657.1;Parent=Phyra75657;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 41971 43609 . + 0 ID=Phyra75657;Parent=Phyra75657;rank=2 scaffold_14 . exon 41971 43609 . + . ID=Phyra75657.2;Parent=Phyra75657;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 ensembl protein_coding_gene 46766 47338 . + . ID=Phyra75660;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000022;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 46766 47338 . + . ID=Phyra75660;Parent=Phyra75660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 46766 46900 . + 0 ID=Phyra75660;Parent=Phyra75660;rank=1 scaffold_14 . exon 46766 46900 . + . ID=Phyra75660.1;Parent=Phyra75660;constitutive=1;rank=1 scaffold_14 . CDS 46972 47073 . + 0 ID=Phyra75660;Parent=Phyra75660;rank=2 scaffold_14 . exon 46972 47073 . + . ID=Phyra75660.2;Parent=Phyra75660;constitutive=1;rank=2 scaffold_14 . CDS 47144 47338 . + 0 ID=Phyra75660;Parent=Phyra75660;rank=3 scaffold_14 . exon 47144 47338 . + . ID=Phyra75660.3;Parent=Phyra75660;constitutive=1;rank=3 scaffold_14 ensembl protein_coding_gene 47538 48722 . - . ID=Phyra75661;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000023;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 47538 48722 . - . ID=Phyra75661;Parent=Phyra75661;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 47538 47712 . - 0 ID=Phyra75661;Parent=Phyra75661;rank=4 scaffold_14 . exon 47538 47712 . - . ID=Phyra75661.4;Parent=Phyra75661;constitutive=1;ensembl_phase=2;rank=4 scaffold_14 . CDS 47740 47821 . - 0 ID=Phyra75661;Parent=Phyra75661;rank=3 scaffold_14 . exon 47740 47821 . - . ID=Phyra75661.3;Parent=Phyra75661;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_14 . CDS 47890 48105 . - 0 ID=Phyra75661;Parent=Phyra75661;rank=2 scaffold_14 . exon 47890 48105 . - . ID=Phyra75661.2;Parent=Phyra75661;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 48176 48722 . - 0 ID=Phyra75661;Parent=Phyra75661;rank=1 scaffold_14 . exon 48176 48722 . - . ID=Phyra75661.1;Parent=Phyra75661;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . repeat_region 51873 52081 . + . description=(CTG)n scaffold_14 . repeat_region 52359 52492 . ? . description=trf scaffold_14 . repeat_region 52362 52493 . ? . description=trf scaffold_14 . repeat_region 52558 52588 . ? . description=trf scaffold_14 ensembl protein_coding_gene 49943 53132 . - . ID=Phyra75662;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000024;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 49943 53132 . - . ID=Phyra75662;Parent=Phyra75662;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 49943 52732 . - 0 ID=Phyra75662;Parent=Phyra75662;rank=3 scaffold_14 . exon 49943 52732 . - . ID=Phyra75662.3;Parent=Phyra75662;constitutive=1;rank=3 scaffold_14 . CDS 52790 52892 . - 0 ID=Phyra75662;Parent=Phyra75662;rank=2 scaffold_14 . exon 52790 52892 . - . ID=Phyra75662.2;Parent=Phyra75662;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 53071 53132 . - 0 ID=Phyra75662;Parent=Phyra75662;rank=1 scaffold_14 . exon 53071 53132 . - . ID=Phyra75662.1;Parent=Phyra75662;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 54289 54657 . - . ID=Phyra75663;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000025;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 54289 54657 . - . ID=Phyra75663;Parent=Phyra75663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 54289 54657 . - 0 ID=Phyra75663;Parent=Phyra75663;rank=1 scaffold_14 . exon 54289 54657 . - . ID=Phyra75663.1;Parent=Phyra75663;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 55394 55783 . - . ID=Phyra75664;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000026;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 55394 55783 . - . ID=Phyra75664;Parent=Phyra75664;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 55394 55783 . - 0 ID=Phyra75664;Parent=Phyra75664;rank=1 scaffold_14 . exon 55394 55783 . - . ID=Phyra75664.1;Parent=Phyra75664;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 56656 58080 . + . ID=Phyra75665;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000027;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 56656 58080 . + . ID=Phyra75665;Parent=Phyra75665;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 56656 58080 . + 0 ID=Phyra75665;Parent=Phyra75665;rank=1 scaffold_14 . exon 56656 58080 . + . ID=Phyra75665.1;Parent=Phyra75665;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 58273 59184 . - . ID=Phyra75666;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000028;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 58273 59184 . - . ID=Phyra75666;Parent=Phyra75666;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 58273 59184 . - 0 ID=Phyra75666;Parent=Phyra75666;rank=1 scaffold_14 . exon 58273 59184 . - . ID=Phyra75666.1;Parent=Phyra75666;constitutive=1;rank=1 scaffold_14 . biological_region 61027 61029 0.999 - . logic_name=eponine scaffold_14 . repeat_region 61591 61612 . ? . description=dust scaffold_14 ensembl protein_coding_gene 60282 61193 . + . ID=Phyra75667;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000029;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 60282 61193 . + . ID=Phyra75667;Parent=Phyra75667;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 60282 61193 . + 0 ID=Phyra75667;Parent=Phyra75667;rank=1 scaffold_14 . exon 60282 61193 . + . ID=Phyra75667.1;Parent=Phyra75667;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 61531 62728 . + . ID=Phyra75668;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000030;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 61531 62728 . + . ID=Phyra75668;Parent=Phyra75668;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 61531 61562 . + 0 ID=Phyra75668;Parent=Phyra75668;rank=1 scaffold_14 . exon 61531 61562 . + . ID=Phyra75668.1;Parent=Phyra75668;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 61645 61752 . + 0 ID=Phyra75668;Parent=Phyra75668;rank=2 scaffold_14 . exon 61645 61752 . + . ID=Phyra75668.2;Parent=Phyra75668;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_14 . CDS 61857 61942 . + 0 ID=Phyra75668;Parent=Phyra75668;rank=3 scaffold_14 . exon 61857 61942 . + . ID=Phyra75668.3;Parent=Phyra75668;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 62092 62594 . + 0 ID=Phyra75668;Parent=Phyra75668;rank=4 scaffold_14 . exon 62092 62594 . + . ID=Phyra75668.4;Parent=Phyra75668;constitutive=1;ensembl_phase=1;rank=4 scaffold_14 . CDS 62666 62728 . + 0 ID=Phyra75668;Parent=Phyra75668;rank=5 scaffold_14 . exon 62666 62728 . + . ID=Phyra75668.5;Parent=Phyra75668;constitutive=1;rank=5 scaffold_14 ensembl protein_coding_gene 66592 67212 . - . ID=Phyra75670;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000032;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 66592 67212 . - . ID=Phyra75670;Parent=Phyra75670;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 66592 67212 . - 0 ID=Phyra75670;Parent=Phyra75670;rank=1 scaffold_14 . exon 66592 67212 . - . ID=Phyra75670.1;Parent=Phyra75670;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 67671 70472 . + . ID=Phyra75671;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000033;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 67671 70472 . + . ID=Phyra75671;Parent=Phyra75671;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 67671 70472 . + 0 ID=Phyra75671;Parent=Phyra75671;rank=1 scaffold_14 . exon 67671 70472 . + . ID=Phyra75671.1;Parent=Phyra75671;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 64074 64926 . - . ID=Phyra94237;biotype=protein_coding;external_name=C_scaffold_14000010;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 64074 64926 . - . ID=Phyra94237;Parent=Phyra94237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 64074 64169 . - 0 ID=Phyra94237;Parent=Phyra94237;rank=2 scaffold_14 . exon 64074 64169 . - . ID=Phyra94237.2;Parent=Phyra94237;constitutive=1;rank=2 scaffold_14 . CDS 64237 64926 . - 0 ID=Phyra94237;Parent=Phyra94237;rank=1 scaffold_14 . exon 64237 64926 . - . ID=Phyra94237.1;Parent=Phyra94237;constitutive=1;rank=1 scaffold_14 . repeat_region 71310 71348 . ? . description=trf scaffold_14 . repeat_region 73700 73758 . ? . description=trf scaffold_14 . repeat_region 73700 73779 . ? . description=trf scaffold_14 . repeat_region 73719 73758 . ? . description=trf scaffold_14 ensembl protein_coding_gene 71198 74277 . - . ID=Phyra75672;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000034;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 71198 74277 . - . ID=Phyra75672;Parent=Phyra75672;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 71198 72052 . - 0 ID=Phyra75672;Parent=Phyra75672;rank=5 scaffold_14 . exon 71198 72052 . - . ID=Phyra75672.5;Parent=Phyra75672;constitutive=1;rank=5 scaffold_14 . CDS 72196 72881 . - 0 ID=Phyra75672;Parent=Phyra75672;rank=4 scaffold_14 . exon 72196 72881 . - . ID=Phyra75672.4;Parent=Phyra75672;constitutive=1;ensembl_phase=1;rank=4 scaffold_14 . CDS 72975 73322 . - 0 ID=Phyra75672;Parent=Phyra75672;rank=3 scaffold_14 . exon 72975 73322 . - . ID=Phyra75672.3;Parent=Phyra75672;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 73389 74147 . - 0 ID=Phyra75672;Parent=Phyra75672;rank=2 scaffold_14 . exon 73389 74147 . - . ID=Phyra75672.2;Parent=Phyra75672;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 74205 74277 . - 0 ID=Phyra75672;Parent=Phyra75672;rank=1 scaffold_14 . exon 74205 74277 . - . ID=Phyra75672.1;Parent=Phyra75672;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 76366 76830 . - . ID=Phyra75674;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000036;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 76366 76830 . - . ID=Phyra75674;Parent=Phyra75674;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 76366 76830 . - 0 ID=Phyra75674;Parent=Phyra75674;rank=1 scaffold_14 . exon 76366 76830 . - . ID=Phyra75674.1;Parent=Phyra75674;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 77807 78325 . - . ID=Phyra75675;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000037;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 77807 78325 . - . ID=Phyra75675;Parent=Phyra75675;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 77807 78325 . - 0 ID=Phyra75675;Parent=Phyra75675;rank=1 scaffold_14 . exon 77807 78325 . - . ID=Phyra75675.1;Parent=Phyra75675;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 75534 75953 . + . ID=Phyra94241;biotype=protein_coding;external_name=C_scaffold_14000014;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 75534 75953 . + . ID=Phyra94241;Parent=Phyra94241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 75534 75953 . + 0 ID=Phyra94241;Parent=Phyra94241;rank=1 scaffold_14 . exon 75534 75953 . + . ID=Phyra94241.1;Parent=Phyra94241;constitutive=1;rank=1 scaffold_14 . repeat_region 79823 80033 . ? . description=dust scaffold_14 . repeat_region 80954 80966 . ? . description=dust scaffold_14 . biological_region 86791 86792 0.999 - . logic_name=eponine scaffold_14 . biological_region 88057 88068 0.999 + . logic_name=eponine scaffold_14 ensembl pseudogene 80033 80883 . + . ID=Phyra41725;biotype=pseudogene;external_name=gwEuk.14.258.1;logic_name=jgi_phyra1 scaffold_14 ensembl pseudogene 80033 80883 . + . ID=Phyra41725;Parent=Phyra41725;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_14 . exon 80033 80732 . + . ID=Phyra41725.1;Parent=Phyra41725;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . exon 80809 80883 . + . ID=Phyra41725.2;Parent=Phyra41725;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_14 ensembl protein_coding_gene 82632 83162 . - . ID=Phyra41734;biotype=protein_coding;external_name=gwEuk.14.267.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 82632 83162 . - . ID=Phyra41734;Parent=Phyra41734;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 82632 82722 . - 0 ID=Phyra41734;Parent=Phyra41734;rank=3 scaffold_14 . exon 82632 82722 . - . ID=Phyra41734.3;Parent=Phyra41734;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 82797 82994 . - 0 ID=Phyra41734;Parent=Phyra41734;rank=2 scaffold_14 . exon 82797 82994 . - . ID=Phyra41734.2;Parent=Phyra41734;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_14 . CDS 83098 83162 . - 0 ID=Phyra41734;Parent=Phyra41734;rank=1 scaffold_14 . exon 83098 83162 . - . ID=Phyra41734.1;Parent=Phyra41734;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 81483 82268 . + . ID=Phyra75677;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000039;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 81483 82268 . + . ID=Phyra75677;Parent=Phyra75677;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 81483 82268 . + 0 ID=Phyra75677;Parent=Phyra75677;rank=1 scaffold_14 . exon 81483 82268 . + . ID=Phyra75677.1;Parent=Phyra75677;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 83389 85150 . + . ID=Phyra75679;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000041;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 83389 85150 . + . ID=Phyra75679;Parent=Phyra75679;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 83389 83792 . + 0 ID=Phyra75679;Parent=Phyra75679;rank=1 scaffold_14 . exon 83389 83792 . + . ID=Phyra75679.1;Parent=Phyra75679;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 83890 85150 . + 0 ID=Phyra75679;Parent=Phyra75679;rank=2 scaffold_14 . exon 83890 85150 . + . ID=Phyra75679.2;Parent=Phyra75679;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 ensembl protein_coding_gene 85395 87149 . - . ID=Phyra75680;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000042;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 85395 87149 . - . ID=Phyra75680;Parent=Phyra75680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 85395 86963 . - 0 ID=Phyra75680;Parent=Phyra75680;rank=2 scaffold_14 . exon 85395 86963 . - . ID=Phyra75680.2;Parent=Phyra75680;constitutive=1;rank=2 scaffold_14 . CDS 87036 87149 . - 0 ID=Phyra75680;Parent=Phyra75680;rank=1 scaffold_14 . exon 87036 87149 . - . ID=Phyra75680.1;Parent=Phyra75680;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 88120 88755 . - . ID=Phyra75681;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000043;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 88120 88755 . - . ID=Phyra75681;Parent=Phyra75681;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 88120 88755 . - 0 ID=Phyra75681;Parent=Phyra75681;rank=1 scaffold_14 . exon 88120 88755 . - . ID=Phyra75681.1;Parent=Phyra75681;constitutive=1;rank=1 scaffold_14 . repeat_region 90617 90637 . ? . description=trf scaffold_14 . repeat_region 96393 96412 . ? . description=trf scaffold_14 . repeat_region 96583 96606 . ? . description=trf scaffold_14 ensembl protein_coding_gene 96679 97524 . + . ID=Phyra71341;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000006;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 96679 97524 . + . ID=Phyra71341;Parent=Phyra71341;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 96679 97524 . + 0 ID=Phyra71341;Parent=Phyra71341;rank=1 scaffold_14 . exon 96679 97524 . + . ID=Phyra71341.1;Parent=Phyra71341;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 90518 91003 . - . ID=Phyra75682;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000044;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 90518 91003 . - . ID=Phyra75682;Parent=Phyra75682;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 90518 91003 . - 0 ID=Phyra75682;Parent=Phyra75682;rank=1 scaffold_14 . exon 90518 91003 . - . ID=Phyra75682.1;Parent=Phyra75682;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 93953 96124 . + . ID=Phyra75683;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000045;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 93953 96124 . + . ID=Phyra75683;Parent=Phyra75683;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 93953 96124 . + 0 ID=Phyra75683;Parent=Phyra75683;rank=1 scaffold_14 . exon 93953 96124 . + . ID=Phyra75683.1;Parent=Phyra75683;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 98061 99566 . - . ID=Phyra75685;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000047;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 98061 99566 . - . ID=Phyra75685;Parent=Phyra75685;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 98061 99566 . - 0 ID=Phyra75685;Parent=Phyra75685;rank=1 scaffold_14 . exon 98061 99566 . - . ID=Phyra75685.1;Parent=Phyra75685;constitutive=1;rank=1 scaffold_14 . biological_region 102866 102866 0.999 - . logic_name=eponine scaffold_14 . repeat_region 104278 104290 . ? . description=dust scaffold_14 . biological_region 104983 104988 0.999 + . logic_name=eponine scaffold_14 . biological_region 105047 105050 0.999 + . logic_name=eponine scaffold_14 . repeat_region 105899 105910 . ? . description=dust scaffold_14 . biological_region 107474 107480 0.999 - . logic_name=eponine scaffold_14 . biological_region 107569 107570 0.999 + . logic_name=eponine scaffold_14 . biological_region 107660 107663 0.999 - . logic_name=eponine scaffold_14 . repeat_region 108242 113089 . ? . description=dust scaffold_14 ensembl protein_coding_gene 100788 103424 . - . ID=Phyra75686;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000048;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 100788 103424 . - . ID=Phyra75686;Parent=Phyra75686;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 100788 102238 . - 0 ID=Phyra75686;Parent=Phyra75686;rank=3 scaffold_14 . exon 100788 102238 . - . ID=Phyra75686.3;Parent=Phyra75686;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 102339 102429 . - 0 ID=Phyra75686;Parent=Phyra75686;rank=2 scaffold_14 . exon 102339 102429 . - . ID=Phyra75686.2;Parent=Phyra75686;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_14 . CDS 102636 103424 . - 0 ID=Phyra75686;Parent=Phyra75686;rank=1 scaffold_14 . exon 102636 103424 . - . ID=Phyra75686.1;Parent=Phyra75686;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 104936 105307 . - . ID=Phyra75687;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000049;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 104936 105307 . - . ID=Phyra75687;Parent=Phyra75687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 104936 105307 . - 0 ID=Phyra75687;Parent=Phyra75687;rank=1 scaffold_14 . exon 104936 105307 . - . ID=Phyra75687.1;Parent=Phyra75687;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 107000 108112 . + . ID=Phyra75688;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000050;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 107000 108112 . + . ID=Phyra75688;Parent=Phyra75688;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 107000 108014 . + 0 ID=Phyra75688;Parent=Phyra75688;rank=1 scaffold_14 . exon 107000 108014 . + . ID=Phyra75688.1;Parent=Phyra75688;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 108093 108112 . + 0 ID=Phyra75688;Parent=Phyra75688;rank=2 scaffold_14 . exon 108093 108112 . + . ID=Phyra75688.2;Parent=Phyra75688;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . repeat_region 119362 120276 . - . description=GypsyPi-1c_I-int scaffold_14 . repeat_region 120278 120418 . ? . description=dust scaffold_14 . biological_region 121323 121327 0.999 - . logic_name=eponine scaffold_14 . biological_region 121385 121390 0.999 - . logic_name=eponine scaffold_14 . repeat_region 122082 122094 . ? . description=dust scaffold_14 . repeat_region 122547 122559 . ? . description=dust scaffold_14 . biological_region 123700 123703 0.999 - . logic_name=eponine scaffold_14 . repeat_region 125519 125531 . ? . description=dust scaffold_14 . biological_region 126174 126178 0.999 + . logic_name=eponine scaffold_14 . biological_region 126679 126685 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 121065 121436 . + . ID=Phyra75689;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000051;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 121065 121436 . + . ID=Phyra75689;Parent=Phyra75689;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 121065 121436 . + 0 ID=Phyra75689;Parent=Phyra75689;rank=1 scaffold_14 . exon 121065 121436 . + . ID=Phyra75689.1;Parent=Phyra75689;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 122978 125315 . + . ID=Phyra75690;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000052;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 122978 125315 . + . ID=Phyra75690;Parent=Phyra75690;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 122978 123794 . + 0 ID=Phyra75690;Parent=Phyra75690;rank=1 scaffold_14 . exon 122978 123794 . + . ID=Phyra75690.1;Parent=Phyra75690;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 124005 124666 . + 0 ID=Phyra75690;Parent=Phyra75690;rank=2 scaffold_14 . exon 124005 124666 . + . ID=Phyra75690.2;Parent=Phyra75690;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 124739 124871 . + 0 ID=Phyra75690;Parent=Phyra75690;rank=3 scaffold_14 . exon 124739 124871 . + . ID=Phyra75690.3;Parent=Phyra75690;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_14 . CDS 125089 125315 . + 0 ID=Phyra75690;Parent=Phyra75690;rank=4 scaffold_14 . exon 125089 125315 . + . ID=Phyra75690.4;Parent=Phyra75690;constitutive=1;ensembl_phase=1;rank=4 scaffold_14 ensembl protein_coding_gene 126469 132185 . + . ID=Phyra75691;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000053;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 126469 132185 . + . ID=Phyra75691;Parent=Phyra75691;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 126469 126809 . + 0 ID=Phyra75691;Parent=Phyra75691;rank=1 scaffold_14 . exon 126469 126809 . + . ID=Phyra75691.1;Parent=Phyra75691;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 126876 126938 . + 0 ID=Phyra75691;Parent=Phyra75691;rank=2 scaffold_14 . exon 126876 126938 . + . ID=Phyra75691.2;Parent=Phyra75691;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_14 . CDS 127010 127075 . + 0 ID=Phyra75691;Parent=Phyra75691;rank=3 scaffold_14 . exon 127010 127075 . + . ID=Phyra75691.3;Parent=Phyra75691;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_14 . CDS 127148 129001 . + 0 ID=Phyra75691;Parent=Phyra75691;rank=4 scaffold_14 . exon 127148 129001 . + . ID=Phyra75691.4;Parent=Phyra75691;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_14 . CDS 129544 129939 . + 0 ID=Phyra75691;Parent=Phyra75691;rank=5 scaffold_14 . exon 129544 129939 . + . ID=Phyra75691.5;Parent=Phyra75691;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_14 . CDS 130014 130079 . + 0 ID=Phyra75691;Parent=Phyra75691;rank=6 scaffold_14 . CDS 130145 132185 . + 0 ID=Phyra75691;Parent=Phyra75691;rank=7 scaffold_14 . exon 130014 130079 . + . ID=Phyra75691.6;Parent=Phyra75691;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_14 . exon 130145 132185 . + . ID=Phyra75691.7;Parent=Phyra75691;constitutive=1;ensembl_phase=2;rank=7 scaffold_14 ensembl protein_coding_gene 132616 135239 . + . ID=Phyra75692;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000054;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 132616 135239 . + . ID=Phyra75692;Parent=Phyra75692;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 132616 132896 . + 0 ID=Phyra75692;Parent=Phyra75692;rank=1 scaffold_14 . exon 132616 132896 . + . ID=Phyra75692.1;Parent=Phyra75692;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 132959 133018 . + 0 ID=Phyra75692;Parent=Phyra75692;rank=2 scaffold_14 . exon 132959 133018 . + . ID=Phyra75692.2;Parent=Phyra75692;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_14 . CDS 133080 133145 . + 0 ID=Phyra75692;Parent=Phyra75692;rank=3 scaffold_14 . exon 133080 133145 . + . ID=Phyra75692.3;Parent=Phyra75692;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_14 . CDS 133218 133418 . + 0 ID=Phyra75692;Parent=Phyra75692;rank=4 scaffold_14 . exon 133218 133418 . + . ID=Phyra75692.4;Parent=Phyra75692;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_14 . CDS 133510 133575 . + 0 ID=Phyra75692;Parent=Phyra75692;rank=5 scaffold_14 . exon 133510 133575 . + . ID=Phyra75692.5;Parent=Phyra75692;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_14 . CDS 133646 133815 . + 0 ID=Phyra75692;Parent=Phyra75692;rank=6 scaffold_14 . exon 133646 133815 . + . ID=Phyra75692.6;Parent=Phyra75692;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_14 . CDS 133888 135239 . + 0 ID=Phyra75692;Parent=Phyra75692;rank=7 scaffold_14 . exon 133888 135239 . + . ID=Phyra75692.7;Parent=Phyra75692;constitutive=1;ensembl_phase=1;rank=7 scaffold_14 ensembl protein_coding_gene 135889 137319 . + . ID=Phyra75693;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000055;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 135889 137319 . + . ID=Phyra75693;Parent=Phyra75693;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 135889 137319 . + 0 ID=Phyra75693;Parent=Phyra75693;rank=1 scaffold_14 . exon 135889 137319 . + . ID=Phyra75693.1;Parent=Phyra75693;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 137673 139025 . - . ID=Phyra75694;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000056;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 137673 139025 . - . ID=Phyra75694;Parent=Phyra75694;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 137673 139025 . - 0 ID=Phyra75694;Parent=Phyra75694;rank=1 scaffold_14 . exon 137673 139025 . - . ID=Phyra75694.1;Parent=Phyra75694;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 139397 140246 . + . ID=Phyra75695;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000057;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 139397 140246 . + . ID=Phyra75695;Parent=Phyra75695;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 139397 139834 . + 0 ID=Phyra75695;Parent=Phyra75695;rank=1 scaffold_14 . exon 139397 139834 . + . ID=Phyra75695.1;Parent=Phyra75695;constitutive=1;rank=1 scaffold_14 . CDS 139911 140246 . + 0 ID=Phyra75695;Parent=Phyra75695;rank=2 scaffold_14 . repeat_region 149640 149649 . ? . description=dust scaffold_14 . exon 139911 140246 . + . ID=Phyra75695.2;Parent=Phyra75695;constitutive=1;rank=2 scaffold_14 ensembl protein_coding_gene 140352 141884 . - . ID=Phyra75696;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000058;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 140352 141884 . - . ID=Phyra75696;Parent=Phyra75696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 140352 141884 . - 0 ID=Phyra75696;Parent=Phyra75696;rank=1 scaffold_14 . exon 140352 141884 . - . ID=Phyra75696.1;Parent=Phyra75696;constitutive=1;rank=1 scaffold_14 . repeat_region 155464 155541 . ? . description=trf scaffold_14 . repeat_region 161963 161973 . ? . description=dust scaffold_14 . biological_region 164421 164421 0.999 + . logic_name=eponine scaffold_14 . repeat_region 164778 165041 . ? . description=dust scaffold_14 . repeat_region 165316 165326 . ? . description=dust scaffold_14 . repeat_region 165472 165482 . ? . description=dust scaffold_14 . biological_region 168549 168551 0.999 + . logic_name=eponine scaffold_14 . repeat_region 169170 169219 . ? . description=dust scaffold_14 . repeat_region 172018 172045 . ? . description=trf scaffold_14 ensembl protein_coding_gene 171029 171448 . + . ID=Phyra41745;biotype=protein_coding;external_name=gwEuk.14.278.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 171029 171448 . + . ID=Phyra41745;Parent=Phyra41745;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 171029 171448 . + 0 ID=Phyra41745;Parent=Phyra41745;rank=1 scaffold_14 . exon 171029 171448 . + . ID=Phyra41745.1;Parent=Phyra41745;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 170402 170860 . + . ID=Phyra75697;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000059;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 170402 170860 . + . ID=Phyra75697;Parent=Phyra75697;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 170402 170860 . + 0 ID=Phyra75697;Parent=Phyra75697;rank=1 scaffold_14 . exon 170402 170860 . + . ID=Phyra75697.1;Parent=Phyra75697;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 171822 172154 . - . ID=Phyra75699;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000061;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 171822 172154 . - . ID=Phyra75699;Parent=Phyra75699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 171822 172154 . - 0 ID=Phyra75699;Parent=Phyra75699;rank=1 scaffold_14 . exon 171822 172154 . - . ID=Phyra75699.1;Parent=Phyra75699;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 173768 175616 . - . ID=Phyra94244;biotype=protein_coding;external_name=C_scaffold_14000017;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 173768 175616 . - . ID=Phyra94244;Parent=Phyra94244;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 173768 174202 . - 0 ID=Phyra94244;Parent=Phyra94244;rank=6 scaffold_14 . exon 173768 174202 . - . ID=Phyra94244.6;Parent=Phyra94244;constitutive=1;rank=6 scaffold_14 . CDS 174307 174379 . - 0 ID=Phyra94244;Parent=Phyra94244;rank=5 scaffold_14 . exon 174307 174379 . - . ID=Phyra94244.5;Parent=Phyra94244;constitutive=1;ensembl_phase=2;rank=5 scaffold_14 . CDS 174499 174731 . - 0 ID=Phyra94244;Parent=Phyra94244;rank=4 scaffold_14 . exon 174499 174731 . - . ID=Phyra94244.4;Parent=Phyra94244;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_14 . CDS 174791 175288 . - 0 ID=Phyra94244;Parent=Phyra94244;rank=3 scaffold_14 . exon 174791 175288 . - . ID=Phyra94244.3;Parent=Phyra94244;constitutive=1;rank=3 scaffold_14 . CDS 175359 175478 . - 0 ID=Phyra94244;Parent=Phyra94244;rank=2 scaffold_14 . exon 175359 175478 . - . ID=Phyra94244.2;Parent=Phyra94244;constitutive=1;rank=2 scaffold_14 . CDS 175569 175616 . - 0 ID=Phyra94244;Parent=Phyra94244;rank=1 scaffold_14 . exon 175569 175616 . - . ID=Phyra94244.1;Parent=Phyra94244;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 175789 178848 . + . ID=Phyra94245;biotype=protein_coding;external_name=C_scaffold_14000018;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 175789 178848 . + . ID=Phyra94245;Parent=Phyra94245;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 175789 175850 . + 0 ID=Phyra94245;Parent=Phyra94245;rank=1 scaffold_14 . exon 175789 175850 . + . ID=Phyra94245.1;Parent=Phyra94245;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 176001 176207 . + 0 ID=Phyra94245;Parent=Phyra94245;rank=2 scaffold_14 . exon 176001 176207 . + . ID=Phyra94245.2;Parent=Phyra94245;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_14 . CDS 176282 176356 . + 0 ID=Phyra94245;Parent=Phyra94245;rank=3 scaffold_14 . exon 176282 176356 . + . ID=Phyra94245.3;Parent=Phyra94245;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_14 . CDS 176429 176569 . + 0 ID=Phyra94245;Parent=Phyra94245;rank=4 scaffold_14 . exon 176429 176569 . + . ID=Phyra94245.4;Parent=Phyra94245;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_14 . CDS 176628 176840 . + 0 ID=Phyra94245;Parent=Phyra94245;rank=5 scaffold_14 . exon 176628 176840 . + . ID=Phyra94245.5;Parent=Phyra94245;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_14 . CDS 176913 177056 . + 0 ID=Phyra94245;Parent=Phyra94245;rank=6 scaffold_14 . exon 176913 177056 . + . ID=Phyra94245.6;Parent=Phyra94245;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_14 . CDS 177136 177348 . + 0 ID=Phyra94245;Parent=Phyra94245;rank=7 scaffold_14 . exon 177136 177348 . + . ID=Phyra94245.7;Parent=Phyra94245;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_14 . CDS 177424 177498 . + 0 ID=Phyra94245;Parent=Phyra94245;rank=8 scaffold_14 . exon 177424 177498 . + . ID=Phyra94245.8;Parent=Phyra94245;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_14 . CDS 177576 177650 . + 0 ID=Phyra94245;Parent=Phyra94245;rank=9 scaffold_14 . exon 177576 177650 . + . ID=Phyra94245.9;Parent=Phyra94245;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_14 . CDS 177719 177796 . + 0 ID=Phyra94245;Parent=Phyra94245;rank=10 scaffold_14 . exon 177719 177796 . + . ID=Phyra94245.10;Parent=Phyra94245;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_14 . CDS 177880 178006 . + 0 ID=Phyra94245;Parent=Phyra94245;rank=11 scaffold_14 . exon 177880 178006 . + . ID=Phyra94245.11;Parent=Phyra94245;constitutive=1;ensembl_phase=2;rank=11 scaffold_14 . CDS 178089 178126 . + 0 ID=Phyra94245;Parent=Phyra94245;rank=12 scaffold_14 . exon 178089 178126 . + . ID=Phyra94245.12;Parent=Phyra94245;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_14 . CDS 178288 178752 . + 0 ID=Phyra94245;Parent=Phyra94245;rank=13 scaffold_14 . exon 178288 178752 . + . ID=Phyra94245.13;Parent=Phyra94245;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=13 scaffold_14 . CDS 178830 178848 . + 0 ID=Phyra94245;Parent=Phyra94245;rank=14 scaffold_14 . exon 178830 178848 . + . ID=Phyra94245.14;Parent=Phyra94245;constitutive=1;ensembl_phase=2;rank=14 scaffold_14 . repeat_region 184086 184166 . ? . description=dust scaffold_14 . biological_region 188562 188566 0.999 - . logic_name=eponine scaffold_14 . biological_region 189519 189521 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 181339 182063 . + . ID=Phyra41749;biotype=protein_coding;external_name=gwEuk.14.282.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 181339 182063 . + . ID=Phyra41749;Parent=Phyra41749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 181339 181527 . + 0 ID=Phyra41749;Parent=Phyra41749;rank=1 scaffold_14 . exon 181339 181527 . + . ID=Phyra41749.1;Parent=Phyra41749;constitutive=1;rank=1 scaffold_14 . CDS 181605 182063 . + 0 ID=Phyra41749;Parent=Phyra41749;rank=2 scaffold_14 . exon 181605 182063 . + . ID=Phyra41749.2;Parent=Phyra41749;constitutive=1;rank=2 scaffold_14 ensembl protein_coding_gene 180218 180880 . + . ID=Phyra41751;biotype=protein_coding;external_name=gwEuk.14.284.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 180218 180880 . + . ID=Phyra41751;Parent=Phyra41751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 180218 180880 . + 0 ID=Phyra41751;Parent=Phyra41751;rank=1 scaffold_14 . exon 180218 180880 . + . ID=Phyra41751.1;Parent=Phyra41751;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 182281 184650 . - . ID=Phyra75703;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000065;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 182281 184650 . - . ID=Phyra75703;Parent=Phyra75703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 182281 182425 . - 0 ID=Phyra75703;Parent=Phyra75703;rank=2 scaffold_14 . exon 182281 182425 . - . ID=Phyra75703.2;Parent=Phyra75703;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 182507 184650 . - 0 ID=Phyra75703;Parent=Phyra75703;rank=1 scaffold_14 . exon 182507 184650 . - . ID=Phyra75703.1;Parent=Phyra75703;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 184922 185425 . + . ID=Phyra75704;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000066;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 184922 185425 . + . ID=Phyra75704;Parent=Phyra75704;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 184922 185425 . + 0 ID=Phyra75704;Parent=Phyra75704;rank=1 scaffold_14 . exon 184922 185425 . + . ID=Phyra75704.1;Parent=Phyra75704;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 185803 186695 . + . ID=Phyra75705;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000067;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 185803 186695 . + . ID=Phyra75705;Parent=Phyra75705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 185803 186224 . + 0 ID=Phyra75705;Parent=Phyra75705;rank=1 scaffold_14 . exon 185803 186224 . + . ID=Phyra75705.1;Parent=Phyra75705;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 186308 186514 . + 0 ID=Phyra75705;Parent=Phyra75705;rank=2 scaffold_14 . exon 186308 186514 . + . ID=Phyra75705.2;Parent=Phyra75705;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_14 . CDS 186587 186695 . + 0 ID=Phyra75705;Parent=Phyra75705;rank=3 scaffold_14 . exon 186587 186695 . + . ID=Phyra75705.3;Parent=Phyra75705;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 ensembl protein_coding_gene 187184 188047 . + . ID=Phyra75706;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000068;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 187184 188047 . + . ID=Phyra75706;Parent=Phyra75706;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 187184 187520 . + 0 ID=Phyra75706;Parent=Phyra75706;rank=1 scaffold_14 . exon 187184 187520 . + . ID=Phyra75706.1;Parent=Phyra75706;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 187593 188047 . + 0 ID=Phyra75706;Parent=Phyra75706;rank=2 scaffold_14 . exon 187593 188047 . + . ID=Phyra75706.2;Parent=Phyra75706;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 ensembl protein_coding_gene 189434 191689 . + . ID=Phyra75707;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000069;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 189434 191689 . + . ID=Phyra75707;Parent=Phyra75707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 189434 191689 . + 0 ID=Phyra75707;Parent=Phyra75707;rank=1 scaffold_14 . exon 189434 191689 . + . ID=Phyra75707.1;Parent=Phyra75707;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 195040 195733 . + . ID=Phyra71343;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000008;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 195040 195733 . + . ID=Phyra71343;Parent=Phyra71343;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 195040 195060 . + 0 ID=Phyra71343;Parent=Phyra71343;rank=1 scaffold_14 . exon 195040 195060 . + . ID=Phyra71343.1;Parent=Phyra71343;constitutive=1;rank=1 scaffold_14 . CDS 195197 195302 . + 0 ID=Phyra71343;Parent=Phyra71343;rank=2 scaffold_14 . exon 195197 195302 . + . ID=Phyra71343.2;Parent=Phyra71343;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_14 . CDS 195366 195733 . + 0 ID=Phyra71343;Parent=Phyra71343;rank=3 scaffold_14 . exon 195366 195733 . + . ID=Phyra71343.3;Parent=Phyra71343;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 ensembl protein_coding_gene 197848 198798 . - . ID=Phyra71344;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000009;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 197848 198798 . - . ID=Phyra71344;Parent=Phyra71344;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 197848 197927 . - 0 ID=Phyra71344;Parent=Phyra71344;rank=2 scaffold_14 . exon 197848 197927 . - . ID=Phyra71344.2;Parent=Phyra71344;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 197973 198798 . - 0 ID=Phyra71344;Parent=Phyra71344;rank=1 scaffold_14 . exon 197973 198798 . - . ID=Phyra71344.1;Parent=Phyra71344;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 191912 194227 . - . ID=Phyra75708;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000070;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 191912 194227 . - . ID=Phyra75708;Parent=Phyra75708;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 191912 194020 . - 0 ID=Phyra75708;Parent=Phyra75708;rank=2 scaffold_14 . exon 191912 194020 . - . ID=Phyra75708.2;Parent=Phyra75708;constitutive=1;rank=2 scaffold_14 . CDS 194120 194227 . - 0 ID=Phyra75708;Parent=Phyra75708;rank=1 scaffold_14 . exon 194120 194227 . - . ID=Phyra75708.1;Parent=Phyra75708;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 195917 197602 . - . ID=Phyra75710;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000072;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 195917 197602 . - . ID=Phyra75710;Parent=Phyra75710;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 195917 197602 . - 0 ID=Phyra75710;Parent=Phyra75710;rank=1 scaffold_14 . exon 195917 197602 . - . ID=Phyra75710.1;Parent=Phyra75710;constitutive=1;rank=1 scaffold_14 . repeat_region 200486 200503 . ? . description=dust scaffold_14 . biological_region 201060 201061 0.999 - . logic_name=eponine scaffold_14 . repeat_region 201305 201350 . ? . description=trf scaffold_14 . biological_region 207804 207808 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 204905 205009 . + . ID=Phyra41478;biotype=protein_coding;external_name=gwEuk.14.11.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 204905 205009 . + . ID=Phyra41478;Parent=Phyra41478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 204905 205009 . + 0 ID=Phyra41478;Parent=Phyra41478;rank=1 scaffold_14 . exon 204905 205009 . + . ID=Phyra41478.1;Parent=Phyra41478;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 200858 202469 . - . ID=Phyra71345;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000010;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 200858 202469 . - . ID=Phyra71345;Parent=Phyra71345;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 200858 202212 . - 0 ID=Phyra71345;Parent=Phyra71345;rank=2 scaffold_14 . exon 200858 202212 . - . ID=Phyra71345.2;Parent=Phyra71345;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 202409 202469 . - 0 ID=Phyra71345;Parent=Phyra71345;rank=1 scaffold_14 . exon 202409 202469 . - . ID=Phyra71345.1;Parent=Phyra71345;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 209324 210769 . - . ID=Phyra71346;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000011;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 209324 210769 . - . ID=Phyra71346;Parent=Phyra71346;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 209324 210769 . - 0 ID=Phyra71346;Parent=Phyra71346;rank=1 scaffold_14 . exon 209324 210769 . - . ID=Phyra71346.1;Parent=Phyra71346;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 203661 204530 . - . ID=Phyra75713;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000075;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 203661 204530 . - . ID=Phyra75713;Parent=Phyra75713;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 203661 204099 . - 0 ID=Phyra75713;Parent=Phyra75713;rank=3 scaffold_14 . exon 203661 204099 . - . ID=Phyra75713.3;Parent=Phyra75713;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 204177 204380 . - 0 ID=Phyra75713;Parent=Phyra75713;rank=2 scaffold_14 . exon 204177 204380 . - . ID=Phyra75713.2;Parent=Phyra75713;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_14 . CDS 204442 204530 . - 0 ID=Phyra75713;Parent=Phyra75713;rank=1 scaffold_14 . exon 204442 204530 . - . ID=Phyra75713.1;Parent=Phyra75713;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 206019 207011 . - . ID=Phyra75714;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000076;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 206019 207011 . - . ID=Phyra75714;Parent=Phyra75714;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 206019 207011 . - 0 ID=Phyra75714;Parent=Phyra75714;rank=1 scaffold_14 . exon 206019 207011 . - . ID=Phyra75714.1;Parent=Phyra75714;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 207407 208354 . + . ID=Phyra75715;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000077;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 207407 208354 . + . ID=Phyra75715;Parent=Phyra75715;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 207407 208354 . + 0 ID=Phyra75715;Parent=Phyra75715;rank=1 scaffold_14 . exon 207407 208354 . + . ID=Phyra75715.1;Parent=Phyra75715;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 208603 209024 . + . ID=Phyra75716;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000078;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 208603 209024 . + . ID=Phyra75716;Parent=Phyra75716;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 208603 208707 . + 0 ID=Phyra75716;Parent=Phyra75716;rank=1 scaffold_14 . exon 208603 208707 . + . ID=Phyra75716.1;Parent=Phyra75716;constitutive=1;rank=1 scaffold_14 . CDS 208773 209024 . + 0 ID=Phyra75716;Parent=Phyra75716;rank=2 scaffold_14 . exon 208773 209024 . + . ID=Phyra75716.2;Parent=Phyra75716;constitutive=1;rank=2 scaffold_14 ensembl protein_coding_gene 212900 215185 . - . ID=Phyra41489;biotype=protein_coding;external_name=gwEuk.14.22.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 212900 215185 . - . ID=Phyra41489;Parent=Phyra41489;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 212900 215185 . - 0 ID=Phyra41489;Parent=Phyra41489;rank=1 scaffold_14 . exon 212900 215185 . - . ID=Phyra41489.1;Parent=Phyra41489;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 216156 217859 . - . ID=Phyra71348;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000013;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 216156 217859 . - . ID=Phyra71348;Parent=Phyra71348;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 216156 217859 . - 0 ID=Phyra71348;Parent=Phyra71348;rank=1 scaffold_14 . exon 216156 217859 . - . ID=Phyra71348.1;Parent=Phyra71348;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 211115 212059 . + . ID=Phyra75718;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000080;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 211115 212059 . + . ID=Phyra75718;Parent=Phyra75718;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 211115 212059 . + 0 ID=Phyra75718;Parent=Phyra75718;rank=1 scaffold_14 . exon 211115 212059 . + . ID=Phyra75718.1;Parent=Phyra75718;constitutive=1;rank=1 scaffold_14 . repeat_region 223381 223389 . ? . description=dust scaffold_14 . repeat_region 226122 226129 . ? . description=dust scaffold_14 . repeat_region 226212 226298 . ? . description=trf scaffold_14 . repeat_region 226212 226298 . ? . description=trf scaffold_14 . repeat_region 226212 226298 . ? . description=trf scaffold_14 . repeat_region 226974 226988 . ? . description=dust scaffold_14 ensembl protein_coding_gene 220651 221587 . + . ID=Phyra75721;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000083;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 220651 221587 . + . ID=Phyra75721;Parent=Phyra75721;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 220651 220893 . + 0 ID=Phyra75721;Parent=Phyra75721;rank=1 scaffold_14 . exon 220651 220893 . + . ID=Phyra75721.1;Parent=Phyra75721;constitutive=1;rank=1 scaffold_14 . CDS 220961 221587 . + 0 ID=Phyra75721;Parent=Phyra75721;rank=2 scaffold_14 . exon 220961 221587 . + . ID=Phyra75721.2;Parent=Phyra75721;constitutive=1;rank=2 scaffold_14 ensembl protein_coding_gene 222835 223365 . + . ID=Phyra75723;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000085;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 222835 223365 . + . ID=Phyra75723;Parent=Phyra75723;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 222835 223365 . + 0 ID=Phyra75723;Parent=Phyra75723;rank=1 scaffold_14 . exon 222835 223365 . + . ID=Phyra75723.1;Parent=Phyra75723;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 221804 222656 . - . ID=Phyra94247;biotype=protein_coding;external_name=C_scaffold_14000020;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 221804 222656 . - . ID=Phyra94247;Parent=Phyra94247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 221804 222281 . - 0 ID=Phyra94247;Parent=Phyra94247;rank=3 scaffold_14 . exon 221804 222281 . - . ID=Phyra94247.3;Parent=Phyra94247;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 222358 222467 . - 0 ID=Phyra94247;Parent=Phyra94247;rank=2 scaffold_14 . exon 222358 222467 . - . ID=Phyra94247.2;Parent=Phyra94247;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_14 . CDS 222564 222656 . - 0 ID=Phyra94247;Parent=Phyra94247;rank=1 scaffold_14 . exon 222564 222656 . - . ID=Phyra94247.1;Parent=Phyra94247;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 223507 225657 . - . ID=Phyra94249;biotype=protein_coding;external_name=C_scaffold_14000022;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 223507 225657 . - . ID=Phyra94249;Parent=Phyra94249;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 223507 224252 . - 0 ID=Phyra94249;Parent=Phyra94249;rank=3 scaffold_14 . exon 223507 224252 . - . ID=Phyra94249.3;Parent=Phyra94249;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 224646 224788 . - 0 ID=Phyra94249;Parent=Phyra94249;rank=2 scaffold_14 . exon 224646 224788 . - . ID=Phyra94249.2;Parent=Phyra94249;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 225101 225657 . - 0 ID=Phyra94249;Parent=Phyra94249;rank=1 scaffold_14 . exon 225101 225657 . - . ID=Phyra94249.1;Parent=Phyra94249;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . biological_region 236497 236501 0.999 - . logic_name=eponine scaffold_14 . biological_region 236525 236525 0.999 + . logic_name=eponine scaffold_14 . biological_region 237791 237794 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 234684 236195 . + . ID=Phyra75725;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000087;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 234684 236195 . + . ID=Phyra75725;Parent=Phyra75725;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 234684 236195 . + 0 ID=Phyra75725;Parent=Phyra75725;rank=1 scaffold_14 . exon 234684 236195 . + . ID=Phyra75725.1;Parent=Phyra75725;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 236391 238115 . - . ID=Phyra75726;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000088;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 236391 238115 . - . ID=Phyra75726;Parent=Phyra75726;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 236391 237699 . - 0 ID=Phyra75726;Parent=Phyra75726;rank=3 scaffold_14 . exon 236391 237699 . - . ID=Phyra75726.3;Parent=Phyra75726;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 237845 237930 . - 0 ID=Phyra75726;Parent=Phyra75726;rank=2 scaffold_14 . exon 237845 237930 . - . ID=Phyra75726.2;Parent=Phyra75726;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_14 . CDS 238029 238115 . - 0 ID=Phyra75726;Parent=Phyra75726;rank=1 scaffold_14 . exon 238029 238115 . - . ID=Phyra75726.1;Parent=Phyra75726;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 238414 241528 . - . ID=Phyra75727;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000089;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 238414 241528 . - . ID=Phyra75727;Parent=Phyra75727;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 238414 241082 . - 0 ID=Phyra75727;Parent=Phyra75727;rank=2 scaffold_14 . exon 238414 241082 . - . ID=Phyra75727.2;Parent=Phyra75727;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 241195 241528 . - 0 ID=Phyra75727;Parent=Phyra75727;rank=1 scaffold_14 . repeat_region 241119 241168 . ? . description=dust scaffold_14 . repeat_region 242610 242624 . ? . description=dust scaffold_14 . repeat_region 246796 246804 . ? . description=dust scaffold_14 . repeat_region 247696 247738 . ? . description=trf scaffold_14 . exon 241195 241528 . - . ID=Phyra75727.1;Parent=Phyra75727;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 243266 244846 . + . ID=Phyra75728;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000090;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 243266 244846 . + . ID=Phyra75728;Parent=Phyra75728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 243266 243580 . + 0 ID=Phyra75728;Parent=Phyra75728;rank=1 scaffold_14 . exon 243266 243580 . + . ID=Phyra75728.1;Parent=Phyra75728;constitutive=1;rank=1 scaffold_14 . CDS 243627 243987 . + 0 ID=Phyra75728;Parent=Phyra75728;rank=2 scaffold_14 . exon 243627 243987 . + . ID=Phyra75728.2;Parent=Phyra75728;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_14 . CDS 244010 244138 . + 0 ID=Phyra75728;Parent=Phyra75728;rank=3 scaffold_14 . exon 244010 244138 . + . ID=Phyra75728.3;Parent=Phyra75728;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 244247 244737 . + 0 ID=Phyra75728;Parent=Phyra75728;rank=4 scaffold_14 . exon 244247 244737 . + . ID=Phyra75728.4;Parent=Phyra75728;constitutive=1;ensembl_phase=1;rank=4 scaffold_14 . CDS 244841 244846 . + 0 ID=Phyra75728;Parent=Phyra75728;rank=5 scaffold_14 . exon 244841 244846 . + . ID=Phyra75728.5;Parent=Phyra75728;constitutive=1;rank=5 scaffold_14 ensembl protein_coding_gene 248026 252062 . + . ID=Phyra75729;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000091;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 248026 252062 . + . ID=Phyra75729;Parent=Phyra75729;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 248026 249420 . + 0 ID=Phyra75729;Parent=Phyra75729;rank=1 scaffold_14 . exon 248026 249420 . + . ID=Phyra75729.1;Parent=Phyra75729;constitutive=1;rank=1 scaffold_14 . CDS 249459 252062 . + 0 ID=Phyra75729;Parent=Phyra75729;rank=2 scaffold_14 . exon 249459 252062 . + . ID=Phyra75729.2;Parent=Phyra75729;constitutive=1;rank=2 scaffold_14 . biological_region 250355 250358 0.999 - . logic_name=eponine scaffold_14 . biological_region 255954 255955 0.999 - . logic_name=eponine scaffold_14 . repeat_region 258815 261487 . ? . description=dust scaffold_14 . repeat_region 262125 262145 . ? . description=trf scaffold_14 . repeat_region 262763 262812 . ? . description=dust scaffold_14 . repeat_region 263947 263996 . ? . description=dust scaffold_14 . repeat_region 266367 266387 . ? . description=trf scaffold_14 . repeat_region 266463 266512 . ? . description=dust scaffold_14 . repeat_region 268296 268345 . ? . description=dust scaffold_14 ensembl protein_coding_gene 264239 265312 . + . ID=Phyra75730;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000092;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 264239 265312 . + . ID=Phyra75730;Parent=Phyra75730;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 264239 265312 . + 0 ID=Phyra75730;Parent=Phyra75730;rank=1 scaffold_14 . exon 264239 265312 . + . ID=Phyra75730.1;Parent=Phyra75730;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 268240 271105 . - . ID=Phyra75731;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000093;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 268240 271105 . - . ID=Phyra75731;Parent=Phyra75731;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 268240 268253 . - 0 ID=Phyra75731;Parent=Phyra75731;rank=2 scaffold_14 . exon 268240 268253 . - . ID=Phyra75731.2;Parent=Phyra75731;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 268369 271105 . - 0 ID=Phyra75731;Parent=Phyra75731;rank=1 scaffold_14 . exon 268369 271105 . - . ID=Phyra75731.1;Parent=Phyra75731;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . biological_region 270797 270798 0.999 + . logic_name=eponine scaffold_14 ensembl tRNA_gene 276212 276281 . + . ID=EPrPRAG00000000213;biotype=tRNA;description=tRNA-Glu for anticodon UUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_14 ensembl transcript 276212 276281 . + . ID=EPrPRAT00000000213;Parent=EPrPRAG00000000213;biotype=tRNA;logic_name=ncrna_eg scaffold_14 . exon 276212 276281 . + . ID=EPrPRAE00000000213;Parent=EPrPRAT00000000213;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 281547 282162 . + . ID=Phyra41504;biotype=protein_coding;external_name=gwEuk.14.37.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 281547 282162 . + . ID=Phyra41504;Parent=Phyra41504;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 281547 282025 . + 0 ID=Phyra41504;Parent=Phyra41504;rank=1 scaffold_14 . exon 281547 282025 . + . ID=Phyra41504.1;Parent=Phyra41504;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 282099 282162 . + 0 ID=Phyra41504;Parent=Phyra41504;rank=2 scaffold_14 . exon 282099 282162 . + . ID=Phyra41504.2;Parent=Phyra41504;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 ensembl protein_coding_gene 282402 283159 . - . ID=Phyra71350;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000015;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 282402 283159 . - . ID=Phyra71350;Parent=Phyra71350;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 282402 282438 . - 0 ID=Phyra71350;Parent=Phyra71350;rank=3 scaffold_14 . exon 282402 282438 . - . ID=Phyra71350.3;Parent=Phyra71350;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 282506 283033 . - 0 ID=Phyra71350;Parent=Phyra71350;rank=2 scaffold_14 . exon 282506 283033 . - . ID=Phyra71350.2;Parent=Phyra71350;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_14 . CDS 283107 283159 . - 0 ID=Phyra71350;Parent=Phyra71350;rank=1 scaffold_14 . exon 283107 283159 . - . ID=Phyra71350.1;Parent=Phyra71350;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 285942 287651 . + . ID=Phyra71351;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000016;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 285942 287651 . + . ID=Phyra71351;Parent=Phyra71351;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 285942 285966 . + 0 ID=Phyra71351;Parent=Phyra71351;rank=1 scaffold_14 . exon 285942 285966 . + . ID=Phyra71351.1;Parent=Phyra71351;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 286114 287651 . + 0 ID=Phyra71351;Parent=Phyra71351;rank=2 scaffold_14 . exon 286114 287651 . + . ID=Phyra71351.2;Parent=Phyra71351;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 ensembl protein_coding_gene 279544 281285 . + . ID=Phyra75732;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000094;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 279544 281285 . + . ID=Phyra75732;Parent=Phyra75732;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 279544 279720 . + 0 ID=Phyra75732;Parent=Phyra75732;rank=1 scaffold_14 . exon 279544 279720 . + . ID=Phyra75732.1;Parent=Phyra75732;constitutive=1;rank=1 scaffold_14 . CDS 279786 279857 . + 0 ID=Phyra75732;Parent=Phyra75732;rank=2 scaffold_14 . exon 279786 279857 . + . ID=Phyra75732.2;Parent=Phyra75732;constitutive=1;rank=2 scaffold_14 . CDS 279879 280532 . + 0 ID=Phyra75732;Parent=Phyra75732;rank=3 scaffold_14 . exon 279879 280532 . + . ID=Phyra75732.3;Parent=Phyra75732;constitutive=1;rank=3 scaffold_14 . CDS 280575 281285 . + 0 ID=Phyra75732;Parent=Phyra75732;rank=4 scaffold_14 . exon 280575 281285 . + . ID=Phyra75732.4;Parent=Phyra75732;constitutive=1;rank=4 scaffold_14 ensembl protein_coding_gene 283371 284621 . + . ID=Phyra75735;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000097;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 283371 284621 . + . ID=Phyra75735;Parent=Phyra75735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 283371 284621 . + 0 ID=Phyra75735;Parent=Phyra75735;rank=1 scaffold_14 . exon 283371 284621 . + . ID=Phyra75735.1;Parent=Phyra75735;constitutive=1;rank=1 scaffold_14 . biological_region 290019 290024 0.999 + . logic_name=eponine scaffold_14 . repeat_region 291312 291490 . ? . description=trf scaffold_14 . biological_region 292594 292599 0.999 + . logic_name=eponine scaffold_14 . biological_region 293654 293659 0.999 + . logic_name=eponine scaffold_14 . repeat_region 294742 295552 . ? . description=trf scaffold_14 ensembl protein_coding_gene 289774 290502 . + . ID=Phyra75737;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000099;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 289774 290502 . + . ID=Phyra75737;Parent=Phyra75737;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 289774 290502 . + 0 ID=Phyra75737;Parent=Phyra75737;rank=1 scaffold_14 . exon 289774 290502 . + . ID=Phyra75737.1;Parent=Phyra75737;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 291126 291578 . + . ID=Phyra75738;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000100;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 291126 291578 . + . ID=Phyra75738;Parent=Phyra75738;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 291126 291578 . + 0 ID=Phyra75738;Parent=Phyra75738;rank=1 scaffold_14 . exon 291126 291578 . + . ID=Phyra75738.1;Parent=Phyra75738;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 293651 295739 . + . ID=Phyra75739;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000101;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 293651 295739 . + . ID=Phyra75739;Parent=Phyra75739;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 293651 294206 . + 0 ID=Phyra75739;Parent=Phyra75739;rank=1 scaffold_14 . exon 293651 294206 . + . ID=Phyra75739.1;Parent=Phyra75739;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 294687 295585 . + 0 ID=Phyra75739;Parent=Phyra75739;rank=2 scaffold_14 . exon 294687 295585 . + . ID=Phyra75739.2;Parent=Phyra75739;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 295716 295739 . + 0 ID=Phyra75739;Parent=Phyra75739;rank=3 scaffold_14 . exon 295716 295739 . + . ID=Phyra75739.3;Parent=Phyra75739;constitutive=1;rank=3 scaffold_14 ensembl protein_coding_gene 298986 299444 . + . ID=Phyra75740;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000102;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 298986 299444 . + . ID=Phyra75740;Parent=Phyra75740;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 298986 299444 . + 0 ID=Phyra75740;Parent=Phyra75740;rank=1 scaffold_14 . exon 298986 299444 . + . ID=Phyra75740.1;Parent=Phyra75740;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 292434 292713 . - . ID=Phyra94252;biotype=protein_coding;external_name=C_scaffold_14000025;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 292434 292713 . - . ID=Phyra94252;Parent=Phyra94252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 292434 292529 . - 0 ID=Phyra94252;Parent=Phyra94252;rank=2 scaffold_14 . exon 292434 292529 . - . ID=Phyra94252.2;Parent=Phyra94252;constitutive=1;rank=2 scaffold_14 . CDS 292606 292713 . - 0 ID=Phyra94252;Parent=Phyra94252;rank=1 scaffold_14 . exon 292606 292713 . - . ID=Phyra94252.1;Parent=Phyra94252;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 292954 293518 . - . ID=Phyra94253;biotype=protein_coding;external_name=C_scaffold_14000026;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 292954 293518 . - . ID=Phyra94253;Parent=Phyra94253;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 292954 293085 . - 0 ID=Phyra94253;Parent=Phyra94253;rank=4 scaffold_14 . exon 292954 293085 . - . ID=Phyra94253.4;Parent=Phyra94253;constitutive=1;rank=4 scaffold_14 . CDS 293161 293235 . - 0 ID=Phyra94253;Parent=Phyra94253;rank=3 scaffold_14 . exon 293161 293235 . - . ID=Phyra94253.3;Parent=Phyra94253;constitutive=1;rank=3 scaffold_14 . CDS 293301 293342 . - 0 ID=Phyra94253;Parent=Phyra94253;rank=2 scaffold_14 . exon 293301 293342 . - . ID=Phyra94253.2;Parent=Phyra94253;constitutive=1;rank=2 scaffold_14 . CDS 293399 293518 . - 0 ID=Phyra94253;Parent=Phyra94253;rank=1 scaffold_14 . exon 293399 293518 . - . ID=Phyra94253.1;Parent=Phyra94253;constitutive=1;rank=1 scaffold_14 . repeat_region 301986 301993 . ? . description=dust scaffold_14 ensembl protein_coding_gene 299633 301566 . - . ID=Phyra75741;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000103;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 299633 301566 . - . ID=Phyra75741;Parent=Phyra75741;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 299633 299664 . - 0 ID=Phyra75741;Parent=Phyra75741;rank=3 scaffold_14 . exon 299633 299664 . - . ID=Phyra75741.3;Parent=Phyra75741;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 299796 300259 . - 0 ID=Phyra75741;Parent=Phyra75741;rank=2 scaffold_14 . exon 299796 300259 . - . ID=Phyra75741.2;Parent=Phyra75741;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 300452 301566 . - 0 ID=Phyra75741;Parent=Phyra75741;rank=1 scaffold_14 . exon 300452 301566 . - . ID=Phyra75741.1;Parent=Phyra75741;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 302133 303233 . + . ID=Phyra75742;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000104;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 302133 303233 . + . ID=Phyra75742;Parent=Phyra75742;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 302133 303233 . + 0 ID=Phyra75742;Parent=Phyra75742;rank=1 scaffold_14 . exon 302133 303233 . + . ID=Phyra75742.1;Parent=Phyra75742;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 303341 303811 . - . ID=Phyra75743;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000105;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 303341 303811 . - . ID=Phyra75743;Parent=Phyra75743;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 303341 303811 . - 0 ID=Phyra75743;Parent=Phyra75743;rank=1 scaffold_14 . exon 303341 303811 . - . ID=Phyra75743.1;Parent=Phyra75743;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 305188 307179 . + . ID=Phyra75744;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000106;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 305188 307179 . + . ID=Phyra75744;Parent=Phyra75744;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 305188 306211 . + 0 ID=Phyra75744;Parent=Phyra75744;rank=1 scaffold_14 . exon 305188 306211 . + . ID=Phyra75744.1;Parent=Phyra75744;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 306563 307179 . + 0 ID=Phyra75744;Parent=Phyra75744;rank=2 scaffold_14 . exon 306563 307179 . + . ID=Phyra75744.2;Parent=Phyra75744;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 ensembl protein_coding_gene 307986 309608 . + . ID=Phyra75745;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000107;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 307986 309608 . + . ID=Phyra75745;Parent=Phyra75745;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 307986 309608 . + 0 ID=Phyra75745;Parent=Phyra75745;rank=1 scaffold_14 . exon 307986 309608 . + . ID=Phyra75745.1;Parent=Phyra75745;constitutive=1;rank=1 scaffold_14 . biological_region 310608 310611 0.999 + . logic_name=eponine scaffold_14 . biological_region 317730 317731 0.999 + . logic_name=eponine scaffold_14 . biological_region 317735 317735 0.999 - . logic_name=eponine scaffold_14 . biological_region 318248 318251 0.999 - . logic_name=eponine scaffold_14 . biological_region 318328 318330 0.999 - . logic_name=eponine scaffold_14 . biological_region 319003 319007 0.999 - . logic_name=eponine scaffold_14 . biological_region 319172 319176 0.999 - . logic_name=eponine scaffold_14 . biological_region 319259 319263 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 310395 311273 . + . ID=Phyra75746;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000108;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 310395 311273 . + . ID=Phyra75746;Parent=Phyra75746;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 310395 311273 . + 0 ID=Phyra75746;Parent=Phyra75746;rank=1 scaffold_14 . exon 310395 311273 . + . ID=Phyra75746.1;Parent=Phyra75746;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 312081 313202 . + . ID=Phyra75747;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000109;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 312081 313202 . + . ID=Phyra75747;Parent=Phyra75747;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 312081 313202 . + 0 ID=Phyra75747;Parent=Phyra75747;rank=1 scaffold_14 . exon 312081 313202 . + . ID=Phyra75747.1;Parent=Phyra75747;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 314927 315865 . + . ID=Phyra75748;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000110;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 314927 315865 . + . ID=Phyra75748;Parent=Phyra75748;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 314927 315865 . + 0 ID=Phyra75748;Parent=Phyra75748;rank=1 scaffold_14 . exon 314927 315865 . + . ID=Phyra75748.1;Parent=Phyra75748;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 316306 317151 . + . ID=Phyra75749;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000111;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 316306 317151 . + . ID=Phyra75749;Parent=Phyra75749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 316306 317151 . + 0 ID=Phyra75749;Parent=Phyra75749;rank=1 scaffold_14 . exon 316306 317151 . + . ID=Phyra75749.1;Parent=Phyra75749;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 318883 323778 . + . ID=Phyra75750;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000112;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 318883 323778 . + . ID=Phyra75750;Parent=Phyra75750;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 318883 323778 . + 0 ID=Phyra75750;Parent=Phyra75750;rank=1 scaffold_14 . exon 318883 323778 . + . ID=Phyra75750.1;Parent=Phyra75750;constitutive=1;rank=1 scaffold_14 . repeat_region 320107 320135 . ? . description=trf scaffold_14 . repeat_region 320109 320149 . ? . description=trf scaffold_14 . repeat_region 321283 321305 . ? . description=trf scaffold_14 . repeat_region 321295 321374 . ? . description=trf scaffold_14 . repeat_region 321735 321815 . ? . description=trf scaffold_14 . repeat_region 321811 321893 . ? . description=trf scaffold_14 . repeat_region 322055 322252 . ? . description=trf scaffold_14 . repeat_region 322072 322249 . ? . description=trf scaffold_14 . repeat_region 322708 322905 . ? . description=trf scaffold_14 . repeat_region 322943 323047 . ? . description=trf scaffold_14 . repeat_region 322974 323383 . ? . description=trf scaffold_14 . repeat_region 322974 323383 . ? . description=trf scaffold_14 . repeat_region 323488 323526 . ? . description=trf scaffold_14 . repeat_region 326294 326313 . ? . description=trf scaffold_14 . repeat_region 326294 326313 . ? . description=dust scaffold_14 ensembl protein_coding_gene 324533 326536 . + . ID=Phyra75751;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000113;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 324533 326536 . + . ID=Phyra75751;Parent=Phyra75751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 324533 326536 . + 0 ID=Phyra75751;Parent=Phyra75751;rank=1 scaffold_14 . exon 324533 326536 . + . ID=Phyra75751.1;Parent=Phyra75751;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 326744 327679 . + . ID=Phyra75752;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000114;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 326744 327679 . + . ID=Phyra75752;Parent=Phyra75752;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 326744 327679 . + 0 ID=Phyra75752;Parent=Phyra75752;rank=1 scaffold_14 . exon 326744 327679 . + . ID=Phyra75752.1;Parent=Phyra75752;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 328716 329930 . - . ID=Phyra75753;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000115;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 328716 329930 . - . ID=Phyra75753;Parent=Phyra75753;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 328716 329930 . - 0 ID=Phyra75753;Parent=Phyra75753;rank=1 scaffold_14 . exon 328716 329930 . - . ID=Phyra75753.1;Parent=Phyra75753;constitutive=1;rank=1 scaffold_14 . biological_region 335350 335353 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 334025 335758 . + . ID=Phyra41525;biotype=protein_coding;external_name=gwEuk.14.58.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 334025 335758 . + . ID=Phyra41525;Parent=Phyra41525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 334025 335758 . + 0 ID=Phyra41525;Parent=Phyra41525;rank=1 scaffold_14 . exon 334025 335758 . + . ID=Phyra41525.1;Parent=Phyra41525;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 336012 337601 . - . ID=Phyra75756;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000118;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 336012 337601 . - . ID=Phyra75756;Parent=Phyra75756;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 336012 337601 . - 0 ID=Phyra75756;Parent=Phyra75756;rank=1 scaffold_14 . exon 336012 337601 . - . ID=Phyra75756.1;Parent=Phyra75756;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 337972 339562 . + . ID=Phyra75757;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000119;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 337972 339562 . + . ID=Phyra75757;Parent=Phyra75757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 337972 338003 . + 0 ID=Phyra75757;Parent=Phyra75757;rank=1 scaffold_14 . exon 337972 338003 . + . ID=Phyra75757.1;Parent=Phyra75757;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 338689 339348 . + 0 ID=Phyra75757;Parent=Phyra75757;rank=2 scaffold_14 . exon 338689 339348 . + . ID=Phyra75757.2;Parent=Phyra75757;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_14 . CDS 339430 339562 . + 0 ID=Phyra75757;Parent=Phyra75757;rank=3 scaffold_14 ensembl protein_coding_gene 330110 331677 . + . ID=Phyra94257;biotype=protein_coding;external_name=C_scaffold_14000030;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 330110 331677 . + . ID=Phyra94257;Parent=Phyra94257;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 330110 330324 . + 0 ID=Phyra94257;Parent=Phyra94257;rank=1 scaffold_14 . exon 330110 330324 . + . ID=Phyra94257.1;Parent=Phyra94257;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 330405 330717 . + 0 ID=Phyra94257;Parent=Phyra94257;rank=2 scaffold_14 . exon 330405 330717 . + . ID=Phyra94257.2;Parent=Phyra94257;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 330957 331280 . + 0 ID=Phyra94257;Parent=Phyra94257;rank=3 scaffold_14 . exon 330957 331280 . + . ID=Phyra94257.3;Parent=Phyra94257;constitutive=1;rank=3 scaffold_14 . CDS 331371 331518 . + 0 ID=Phyra94257;Parent=Phyra94257;rank=4 scaffold_14 . exon 331371 331518 . + . ID=Phyra94257.4;Parent=Phyra94257;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_14 . CDS 331643 331677 . + 0 ID=Phyra94257;Parent=Phyra94257;rank=5 scaffold_14 . exon 331643 331677 . + . ID=Phyra94257.5;Parent=Phyra94257;constitutive=1;ensembl_phase=1;rank=5 scaffold_14 . repeat_region 338692 339348 . ? . description=trf scaffold_14 . repeat_region 345828 345848 . ? . description=trf scaffold_14 . exon 339430 339562 . + . ID=Phyra75757.3;Parent=Phyra75757;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 ensembl protein_coding_gene 340137 340772 . - . ID=Phyra75758;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000120;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 340137 340772 . - . ID=Phyra75758;Parent=Phyra75758;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 340137 340772 . - 0 ID=Phyra75758;Parent=Phyra75758;rank=1 scaffold_14 . exon 340137 340772 . - . ID=Phyra75758.1;Parent=Phyra75758;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 342294 342932 . - . ID=Phyra75759;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000121;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 342294 342932 . - . ID=Phyra75759;Parent=Phyra75759;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 342294 342932 . - 0 ID=Phyra75759;Parent=Phyra75759;rank=1 scaffold_14 . exon 342294 342932 . - . ID=Phyra75759.1;Parent=Phyra75759;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 344801 345981 . - . ID=Phyra75760;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000122;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 344801 345981 . - . ID=Phyra75760;Parent=Phyra75760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 344801 344944 . - 0 ID=Phyra75760;Parent=Phyra75760;rank=4 scaffold_14 . exon 344801 344944 . - . ID=Phyra75760.4;Parent=Phyra75760;constitutive=1;rank=4 scaffold_14 . CDS 345025 345147 . - 0 ID=Phyra75760;Parent=Phyra75760;rank=3 scaffold_14 . exon 345025 345147 . - . ID=Phyra75760.3;Parent=Phyra75760;constitutive=1;rank=3 scaffold_14 . CDS 345354 345794 . - 0 ID=Phyra75760;Parent=Phyra75760;rank=2 scaffold_14 . exon 345354 345794 . - . ID=Phyra75760.2;Parent=Phyra75760;constitutive=1;rank=2 scaffold_14 . CDS 345910 345981 . - 0 ID=Phyra75760;Parent=Phyra75760;rank=1 scaffold_14 . exon 345910 345981 . - . ID=Phyra75760.1;Parent=Phyra75760;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 348487 349445 . + . ID=Phyra75762;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000124;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 348487 349445 . + . ID=Phyra75762;Parent=Phyra75762;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 348487 349078 . + 0 ID=Phyra75762;Parent=Phyra75762;rank=1 scaffold_14 . exon 348487 349078 . + . ID=Phyra75762.1;Parent=Phyra75762;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 349155 349205 . + 0 ID=Phyra75762;Parent=Phyra75762;rank=2 scaffold_14 . exon 349155 349205 . + . ID=Phyra75762.2;Parent=Phyra75762;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 349300 349445 . + 0 ID=Phyra75762;Parent=Phyra75762;rank=3 scaffold_14 ensembl protein_coding_gene 346931 348263 . - . ID=Phyra94259;biotype=protein_coding;external_name=C_scaffold_14000032;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 346931 348263 . - . ID=Phyra94259;Parent=Phyra94259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 346931 347065 . - 0 ID=Phyra94259;Parent=Phyra94259;rank=6 scaffold_14 . exon 346931 347065 . - . ID=Phyra94259.6;Parent=Phyra94259;constitutive=1;rank=6 scaffold_14 . CDS 347142 347264 . - 0 ID=Phyra94259;Parent=Phyra94259;rank=5 scaffold_14 . exon 347142 347264 . - . ID=Phyra94259.5;Parent=Phyra94259;constitutive=1;rank=5 scaffold_14 . CDS 347466 347524 . - 0 ID=Phyra94259;Parent=Phyra94259;rank=4 scaffold_14 . exon 347466 347524 . - . ID=Phyra94259.4;Parent=Phyra94259;constitutive=1;ensembl_phase=1;rank=4 scaffold_14 . CDS 347567 347972 . - 0 ID=Phyra94259;Parent=Phyra94259;rank=3 scaffold_14 . exon 347567 347972 . - . ID=Phyra94259.3;Parent=Phyra94259;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_14 . CDS 348040 348168 . - 0 ID=Phyra94259;Parent=Phyra94259;rank=2 scaffold_14 . exon 348040 348168 . - . ID=Phyra94259.2;Parent=Phyra94259;constitutive=1;rank=2 scaffold_14 . CDS 348252 348263 . - 0 ID=Phyra94259;Parent=Phyra94259;rank=1 scaffold_14 . exon 348252 348263 . - . ID=Phyra94259.1;Parent=Phyra94259;constitutive=1;rank=1 scaffold_14 . biological_region 349412 349417 0.999 - . logic_name=eponine scaffold_14 . biological_region 349764 349766 0.999 + . logic_name=eponine scaffold_14 . biological_region 349897 349897 0.999 - . logic_name=eponine scaffold_14 . repeat_region 351697 351727 . ? . description=dust scaffold_14 . biological_region 353505 353507 0.999 - . logic_name=eponine scaffold_14 . repeat_region 353617 353626 . ? . description=dust scaffold_14 . biological_region 354794 354796 0.999 + . logic_name=eponine scaffold_14 . biological_region 358381 358388 0.999 + . logic_name=eponine scaffold_14 . biological_region 359107 359107 0.999 - . logic_name=eponine scaffold_14 . biological_region 359128 359131 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 349638 350357 . + . ID=Phyra71353;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000018;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 349638 350357 . + . ID=Phyra71353;Parent=Phyra71353;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 349638 350357 . + 0 ID=Phyra71353;Parent=Phyra71353;rank=1 scaffold_14 . exon 349638 350357 . + . ID=Phyra71353.1;Parent=Phyra71353;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 352224 352958 . - . ID=Phyra71354;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000019;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 352224 352958 . - . ID=Phyra71354;Parent=Phyra71354;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 352224 352641 . - 0 ID=Phyra71354;Parent=Phyra71354;rank=2 scaffold_14 . exon 352224 352641 . - . ID=Phyra71354.2;Parent=Phyra71354;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 352720 352958 . - 0 ID=Phyra71354;Parent=Phyra71354;rank=1 scaffold_14 . exon 352720 352958 . - . ID=Phyra71354.1;Parent=Phyra71354;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 358016 358498 . - . ID=Phyra71356;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000021;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 358016 358498 . - . ID=Phyra71356;Parent=Phyra71356;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 358016 358498 . - 0 ID=Phyra71356;Parent=Phyra71356;rank=1 scaffold_14 . exon 358016 358498 . - . ID=Phyra71356.1;Parent=Phyra71356;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 358753 359563 . + . ID=Phyra71357;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000022;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 358753 359563 . + . ID=Phyra71357;Parent=Phyra71357;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 358753 358821 . + 0 ID=Phyra71357;Parent=Phyra71357;rank=1 scaffold_14 . exon 358753 358821 . + . ID=Phyra71357.1;Parent=Phyra71357;constitutive=1;rank=1 scaffold_14 . CDS 358849 359403 . + 0 ID=Phyra71357;Parent=Phyra71357;rank=2 scaffold_14 . exon 358849 359403 . + . ID=Phyra71357.2;Parent=Phyra71357;constitutive=1;rank=2 scaffold_14 . CDS 359474 359563 . + 0 ID=Phyra71357;Parent=Phyra71357;rank=3 scaffold_14 . exon 349300 349445 . + . ID=Phyra75762.3;Parent=Phyra75762;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 ensembl protein_coding_gene 351196 352068 . - . ID=Phyra75764;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000126;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 351196 352068 . - . ID=Phyra75764;Parent=Phyra75764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 351196 351302 . - 0 ID=Phyra75764;Parent=Phyra75764;rank=4 scaffold_14 . exon 351196 351302 . - . ID=Phyra75764.4;Parent=Phyra75764;constitutive=1;ensembl_phase=1;rank=4 scaffold_14 . CDS 351374 351418 . - 0 ID=Phyra75764;Parent=Phyra75764;rank=3 scaffold_14 . exon 351374 351418 . - . ID=Phyra75764.3;Parent=Phyra75764;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 351483 351909 . - 0 ID=Phyra75764;Parent=Phyra75764;rank=2 scaffold_14 . exon 351483 351909 . - . ID=Phyra75764.2;Parent=Phyra75764;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_14 . CDS 351991 352068 . - 0 ID=Phyra75764;Parent=Phyra75764;rank=1 scaffold_14 . exon 351991 352068 . - . ID=Phyra75764.1;Parent=Phyra75764;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 356468 357380 . - . ID=Phyra75769;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000131;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 356468 357380 . - . ID=Phyra75769;Parent=Phyra75769;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 356468 357019 . - 0 ID=Phyra75769;Parent=Phyra75769;rank=3 scaffold_14 . exon 356468 357019 . - . ID=Phyra75769.3;Parent=Phyra75769;constitutive=1;rank=3 scaffold_14 . CDS 357100 357207 . - 0 ID=Phyra75769;Parent=Phyra75769;rank=2 scaffold_14 . exon 357100 357207 . - . ID=Phyra75769.2;Parent=Phyra75769;constitutive=1;rank=2 scaffold_14 . CDS 357276 357380 . - 0 ID=Phyra75769;Parent=Phyra75769;rank=1 scaffold_14 . exon 357276 357380 . - . ID=Phyra75769.1;Parent=Phyra75769;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 353208 353827 . + . ID=Phyra94262;biotype=protein_coding;external_name=C_scaffold_14000035;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 353208 353827 . + . ID=Phyra94262;Parent=Phyra94262;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 353208 353280 . + 0 ID=Phyra94262;Parent=Phyra94262;rank=1 scaffold_14 . exon 353208 353280 . + . ID=Phyra94262.1;Parent=Phyra94262;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 353383 353549 . + 0 ID=Phyra94262;Parent=Phyra94262;rank=2 scaffold_14 . exon 353383 353549 . + . ID=Phyra94262.2;Parent=Phyra94262;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 353639 353827 . + 0 ID=Phyra94262;Parent=Phyra94262;rank=3 scaffold_14 . exon 353639 353827 . + . ID=Phyra94262.3;Parent=Phyra94262;constitutive=1;rank=3 scaffold_14 ensembl protein_coding_gene 354165 354494 . - . ID=Phyra94263;biotype=protein_coding;external_name=C_scaffold_14000036;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 354165 354494 . - . ID=Phyra94263;Parent=Phyra94263;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 354165 354248 . - 0 ID=Phyra94263;Parent=Phyra94263;rank=3 scaffold_14 . exon 354165 354248 . - . ID=Phyra94263.3;Parent=Phyra94263;constitutive=1;rank=3 scaffold_14 . CDS 354313 354374 . - 0 ID=Phyra94263;Parent=Phyra94263;rank=2 scaffold_14 . exon 354313 354374 . - . ID=Phyra94263.2;Parent=Phyra94263;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 354446 354494 . - 0 ID=Phyra94263;Parent=Phyra94263;rank=1 scaffold_14 . exon 354446 354494 . - . ID=Phyra94263.1;Parent=Phyra94263;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 354760 356354 . + . ID=Phyra94264;biotype=protein_coding;external_name=C_scaffold_14000037;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 354760 356354 . + . ID=Phyra94264;Parent=Phyra94264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 354760 354764 . + 0 ID=Phyra94264;Parent=Phyra94264;rank=1 scaffold_14 . exon 354760 354764 . + . ID=Phyra94264.1;Parent=Phyra94264;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 354788 355118 . + 0 ID=Phyra94264;Parent=Phyra94264;rank=2 scaffold_14 . exon 354788 355118 . + . ID=Phyra94264.2;Parent=Phyra94264;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 355389 355511 . + 0 ID=Phyra94264;Parent=Phyra94264;rank=3 scaffold_14 . exon 355389 355511 . + . ID=Phyra94264.3;Parent=Phyra94264;constitutive=1;rank=3 scaffold_14 . CDS 355583 355696 . + 0 ID=Phyra94264;Parent=Phyra94264;rank=4 scaffold_14 . exon 355583 355696 . + . ID=Phyra94264.4;Parent=Phyra94264;constitutive=1;rank=4 scaffold_14 . CDS 355768 355866 . + 0 ID=Phyra94264;Parent=Phyra94264;rank=5 scaffold_14 . exon 355768 355866 . + . ID=Phyra94264.5;Parent=Phyra94264;constitutive=1;rank=5 scaffold_14 . CDS 355932 356354 . + 0 ID=Phyra94264;Parent=Phyra94264;rank=6 scaffold_14 . exon 355932 356354 . + . ID=Phyra94264.6;Parent=Phyra94264;constitutive=1;rank=6 scaffold_14 . repeat_region 369200 369261 . ? . description=trf scaffold_14 . repeat_region 369203 369261 . ? . description=trf scaffold_14 . repeat_region 369206 369255 . ? . description=trf scaffold_14 . repeat_region 369206 369288 . ? . description=trf scaffold_14 ensembl protein_coding_gene 359728 360174 . - . ID=Phyra41556;biotype=protein_coding;external_name=gwEuk.14.89.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 359728 360174 . - . ID=Phyra41556;Parent=Phyra41556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 359728 360174 . - 0 ID=Phyra41556;Parent=Phyra41556;rank=1 scaffold_14 . exon 359728 360174 . - . ID=Phyra41556.1;Parent=Phyra41556;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 360600 360893 . + . ID=Phyra41564;biotype=protein_coding;external_name=gwEuk.14.97.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 360600 360893 . + . ID=Phyra41564;Parent=Phyra41564;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 360600 360893 . + 0 ID=Phyra41564;Parent=Phyra41564;rank=1 scaffold_14 . exon 360600 360893 . + . ID=Phyra41564.1;Parent=Phyra41564;constitutive=1;rank=1 scaffold_14 . exon 359474 359563 . + . ID=Phyra71357.3;Parent=Phyra71357;constitutive=1;rank=3 scaffold_14 ensembl protein_coding_gene 360991 364209 . - . ID=Phyra75773;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000135;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 360991 364209 . - . ID=Phyra75773;Parent=Phyra75773;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 360991 364209 . - 0 ID=Phyra75773;Parent=Phyra75773;rank=1 scaffold_14 . exon 360991 364209 . - . ID=Phyra75773.1;Parent=Phyra75773;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 366615 368426 . - . ID=Phyra75775;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000137;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 366615 368426 . - . ID=Phyra75775;Parent=Phyra75775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 366615 367083 . - 0 ID=Phyra75775;Parent=Phyra75775;rank=3 scaffold_14 . exon 366615 367083 . - . ID=Phyra75775.3;Parent=Phyra75775;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 367260 367312 . - 0 ID=Phyra75775;Parent=Phyra75775;rank=2 scaffold_14 . exon 367260 367312 . - . ID=Phyra75775.2;Parent=Phyra75775;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_14 . CDS 367542 368426 . - 0 ID=Phyra75775;Parent=Phyra75775;rank=1 scaffold_14 . exon 367542 368426 . - . ID=Phyra75775.1;Parent=Phyra75775;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 364615 366228 . + . ID=Phyra94266;biotype=protein_coding;external_name=C_scaffold_14000039;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 364615 366228 . + . ID=Phyra94266;Parent=Phyra94266;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . exon 364615 364886 . + . ID=Phyra94266.1;Parent=Phyra94266;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 . CDS 364617 364886 . + 0 ID=Phyra94266;Parent=Phyra94266;rank=1 scaffold_14 . CDS 364918 365315 . + 0 ID=Phyra94266;Parent=Phyra94266;rank=2 scaffold_14 . exon 364918 365315 . + . ID=Phyra94266.2;Parent=Phyra94266;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_14 . CDS 365337 365741 . + 0 ID=Phyra94266;Parent=Phyra94266;rank=3 scaffold_14 . exon 365337 365741 . + . ID=Phyra94266.3;Parent=Phyra94266;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_14 . CDS 365766 366228 . + 0 ID=Phyra94266;Parent=Phyra94266;rank=4 scaffold_14 . exon 365766 366228 . + . ID=Phyra94266.4;Parent=Phyra94266;constitutive=1;ensembl_phase=2;rank=4 scaffold_14 ensembl protein_coding_gene 368815 369292 . + . ID=Phyra94268;biotype=protein_coding;external_name=C_scaffold_14000041;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 368815 369292 . + . ID=Phyra94268;Parent=Phyra94268;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 368815 369045 . + 0 ID=Phyra94268;Parent=Phyra94268;rank=1 scaffold_14 . exon 368815 369045 . + . ID=Phyra94268.1;Parent=Phyra94268;constitutive=1;rank=1 scaffold_14 . CDS 369164 369292 . + 0 ID=Phyra94268;Parent=Phyra94268;rank=2 scaffold_14 . exon 369164 369292 . + . ID=Phyra94268.2;Parent=Phyra94268;constitutive=1;rank=2 scaffold_14 . repeat_region 369200 369288 . ? . description=dust scaffold_14 . biological_region 370876 370877 0.999 - . logic_name=eponine scaffold_14 . biological_region 370930 370933 0.999 + . logic_name=eponine scaffold_14 . biological_region 370948 370953 0.999 + . logic_name=eponine scaffold_14 . biological_region 370987 370991 0.999 + . logic_name=eponine scaffold_14 . biological_region 371100 371101 0.999 - . logic_name=eponine scaffold_14 . repeat_region 377787 377794 . ? . description=dust scaffold_14 . biological_region 377814 377820 0.999 + . logic_name=eponine scaffold_14 . repeat_region 378061 378068 . ? . description=dust scaffold_14 ensembl protein_coding_gene 369582 371108 . - . ID=Phyra75777;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000139;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 369582 371108 . - . ID=Phyra75777;Parent=Phyra75777;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 369582 371108 . - 0 ID=Phyra75777;Parent=Phyra75777;rank=1 scaffold_14 . exon 369582 371108 . - . ID=Phyra75777.1;Parent=Phyra75777;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 371712 372921 . + . ID=Phyra75778;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000140;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 371712 372921 . + . ID=Phyra75778;Parent=Phyra75778;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 371712 372855 . + 0 ID=Phyra75778;Parent=Phyra75778;rank=1 scaffold_14 . exon 371712 372855 . + . ID=Phyra75778.1;Parent=Phyra75778;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 372908 372921 . + 0 ID=Phyra75778;Parent=Phyra75778;rank=2 scaffold_14 . exon 372908 372921 . + . ID=Phyra75778.2;Parent=Phyra75778;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 ensembl protein_coding_gene 377723 378343 . - . ID=Phyra75779;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000141;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 377723 378343 . - . ID=Phyra75779;Parent=Phyra75779;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 377723 377759 . - 0 ID=Phyra75779;Parent=Phyra75779;rank=3 scaffold_14 . exon 377723 377759 . - . ID=Phyra75779.3;Parent=Phyra75779;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 377843 378052 . - 0 ID=Phyra75779;Parent=Phyra75779;rank=2 scaffold_14 . exon 377843 378052 . - . ID=Phyra75779.2;Parent=Phyra75779;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_14 . CDS 378102 378343 . - 0 ID=Phyra75779;Parent=Phyra75779;rank=1 scaffold_14 . exon 378102 378343 . - . ID=Phyra75779.1;Parent=Phyra75779;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . repeat_region 380594 380615 . ? . description=trf scaffold_14 ensembl protein_coding_gene 382635 383632 . + . ID=Phyra75780;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000142;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 382635 383632 . + . ID=Phyra75780;Parent=Phyra75780;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 382635 382780 . + 0 ID=Phyra75780;Parent=Phyra75780;rank=1 scaffold_14 . exon 382635 382780 . + . ID=Phyra75780.1;Parent=Phyra75780;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 382841 383105 . + 0 ID=Phyra75780;Parent=Phyra75780;rank=2 scaffold_14 . exon 382841 383105 . + . ID=Phyra75780.2;Parent=Phyra75780;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 383225 383632 . + 0 ID=Phyra75780;Parent=Phyra75780;rank=3 scaffold_14 . exon 383225 383632 . + . ID=Phyra75780.3;Parent=Phyra75780;constitutive=1;rank=3 scaffold_14 ensembl protein_coding_gene 384793 385500 . + . ID=Phyra75781;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000143;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 384793 385500 . + . ID=Phyra75781;Parent=Phyra75781;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 384793 385500 . + 0 ID=Phyra75781;Parent=Phyra75781;rank=1 scaffold_14 . exon 384793 385500 . + . ID=Phyra75781.1;Parent=Phyra75781;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 385936 388095 . + . ID=Phyra75782;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000144;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 385936 388095 . + . ID=Phyra75782;Parent=Phyra75782;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 385936 388095 . + 0 ID=Phyra75782;Parent=Phyra75782;rank=1 scaffold_14 . exon 385936 388095 . + . ID=Phyra75782.1;Parent=Phyra75782;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 388437 389615 . - . ID=Phyra75783;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000145;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 388437 389615 . - . ID=Phyra75783;Parent=Phyra75783;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 388437 389615 . - 0 ID=Phyra75783;Parent=Phyra75783;rank=1 scaffold_14 . exon 388437 389615 . - . ID=Phyra75783.1;Parent=Phyra75783;constitutive=1;rank=1 scaffold_14 . biological_region 390217 390217 0.999 + . logic_name=eponine scaffold_14 . biological_region 390271 390274 0.999 + . logic_name=eponine scaffold_14 . biological_region 390325 390326 0.999 - . logic_name=eponine scaffold_14 . biological_region 393148 393153 0.999 + . logic_name=eponine scaffold_14 . biological_region 393162 393162 0.999 + . logic_name=eponine scaffold_14 . biological_region 393595 393596 0.999 - . logic_name=eponine scaffold_14 . biological_region 394881 394886 0.999 + . logic_name=eponine scaffold_14 . biological_region 396156 396156 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 389875 390401 . - . ID=Phyra75784;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000146;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 389875 390401 . - . ID=Phyra75784;Parent=Phyra75784;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 389875 389972 . - 0 ID=Phyra75784;Parent=Phyra75784;rank=3 scaffold_14 . exon 389875 389972 . - . ID=Phyra75784.3;Parent=Phyra75784;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 390062 390215 . - 0 ID=Phyra75784;Parent=Phyra75784;rank=2 scaffold_14 . exon 390062 390215 . - . ID=Phyra75784.2;Parent=Phyra75784;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_14 . CDS 390288 390401 . - 0 ID=Phyra75784;Parent=Phyra75784;rank=1 scaffold_14 . exon 390288 390401 . - . ID=Phyra75784.1;Parent=Phyra75784;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 390573 391367 . + . ID=Phyra75785;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000147;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 390573 391367 . + . ID=Phyra75785;Parent=Phyra75785;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 390573 391367 . + 0 ID=Phyra75785;Parent=Phyra75785;rank=1 scaffold_14 . exon 390573 391367 . + . ID=Phyra75785.1;Parent=Phyra75785;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 392637 393305 . - . ID=Phyra75786;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000148;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 392637 393305 . - . ID=Phyra75786;Parent=Phyra75786;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 392637 393305 . - 0 ID=Phyra75786;Parent=Phyra75786;rank=1 scaffold_14 . exon 392637 393305 . - . ID=Phyra75786.1;Parent=Phyra75786;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 394100 395647 . - . ID=Phyra75787;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000149;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 394100 395647 . - . ID=Phyra75787;Parent=Phyra75787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 394100 395647 . - 0 ID=Phyra75787;Parent=Phyra75787;rank=1 scaffold_14 . exon 394100 395647 . - . ID=Phyra75787.1;Parent=Phyra75787;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 396076 397569 . - . ID=Phyra75788;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000150;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 396076 397569 . - . ID=Phyra75788;Parent=Phyra75788;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 396076 397569 . - 0 ID=Phyra75788;Parent=Phyra75788;rank=1 scaffold_14 . exon 396076 397569 . - . ID=Phyra75788.1;Parent=Phyra75788;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 397792 399354 . - . ID=Phyra75789;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000151;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 397792 399354 . - . ID=Phyra75789;Parent=Phyra75789;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 397792 399354 . - 0 ID=Phyra75789;Parent=Phyra75789;rank=1 scaffold_14 . exon 397792 399354 . - . ID=Phyra75789.1;Parent=Phyra75789;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 399606 402553 . - . ID=Phyra75790;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000152;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 399606 402553 . - . ID=Phyra75790;Parent=Phyra75790;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 399606 400616 . - 0 ID=Phyra75790;Parent=Phyra75790;rank=5 scaffold_14 . exon 399606 400616 . - . ID=Phyra75790.5;Parent=Phyra75790;constitutive=1;rank=5 scaffold_14 . CDS 400782 400905 . - 0 ID=Phyra75790;Parent=Phyra75790;rank=4 scaffold_14 . exon 400782 400905 . - . ID=Phyra75790.4;Parent=Phyra75790;constitutive=1;ensembl_phase=2;rank=4 scaffold_14 . CDS 401083 401124 . - 0 ID=Phyra75790;Parent=Phyra75790;rank=3 scaffold_14 . exon 401083 401124 . - . ID=Phyra75790.3;Parent=Phyra75790;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_14 . CDS 401477 401484 . - 0 ID=Phyra75790;Parent=Phyra75790;rank=2 scaffold_14 . exon 401477 401484 . - . ID=Phyra75790.2;Parent=Phyra75790;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_14 . CDS 401603 402553 . - 0 ID=Phyra75790;Parent=Phyra75790;rank=1 scaffold_14 . exon 401603 402553 . - . ID=Phyra75790.1;Parent=Phyra75790;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 402820 406794 . + . ID=Phyra75791;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000153;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 402820 406794 . + . ID=Phyra75791;Parent=Phyra75791;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 402820 403337 . + 0 ID=Phyra75791;Parent=Phyra75791;rank=1 scaffold_14 . exon 402820 403337 . + . ID=Phyra75791.1;Parent=Phyra75791;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 403532 404086 . + 0 ID=Phyra75791;Parent=Phyra75791;rank=2 scaffold_14 . exon 403532 404086 . + . ID=Phyra75791.2;Parent=Phyra75791;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_14 . CDS 404128 404229 . + 0 ID=Phyra75791;Parent=Phyra75791;rank=3 scaffold_14 . exon 404128 404229 . + . ID=Phyra75791.3;Parent=Phyra75791;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_14 . CDS 404570 405052 . + 0 ID=Phyra75791;Parent=Phyra75791;rank=4 scaffold_14 . exon 404570 405052 . + . ID=Phyra75791.4;Parent=Phyra75791;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_14 . CDS 405125 405190 . + 0 ID=Phyra75791;Parent=Phyra75791;rank=5 scaffold_14 . exon 405125 405190 . + . ID=Phyra75791.5;Parent=Phyra75791;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_14 . CDS 405262 405321 . + 0 ID=Phyra75791;Parent=Phyra75791;rank=6 scaffold_14 . exon 405262 405321 . + . ID=Phyra75791.6;Parent=Phyra75791;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_14 . CDS 405363 406794 . + 0 ID=Phyra75791;Parent=Phyra75791;rank=7 scaffold_14 . exon 405363 406794 . + . ID=Phyra75791.7;Parent=Phyra75791;constitutive=1;ensembl_phase=2;rank=7 scaffold_14 ensembl protein_coding_gene 407184 408674 . - . ID=Phyra75792;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000154;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 407184 408674 . - . ID=Phyra75792;Parent=Phyra75792;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 407184 408674 . - 0 ID=Phyra75792;Parent=Phyra75792;rank=1 scaffold_14 . exon 407184 408674 . - . ID=Phyra75792.1;Parent=Phyra75792;constitutive=1;rank=1 scaffold_14 . biological_region 410259 410263 0.999 - . logic_name=eponine scaffold_14 . biological_region 412115 412117 0.999 + . logic_name=eponine scaffold_14 . repeat_region 415473 415480 . ? . description=dust scaffold_14 . biological_region 416461 416462 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 409908 412226 . - . ID=Phyra75793;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000155;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 409908 412226 . - . ID=Phyra75793;Parent=Phyra75793;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 409908 412226 . - 0 ID=Phyra75793;Parent=Phyra75793;rank=1 scaffold_14 . exon 409908 412226 . - . ID=Phyra75793.1;Parent=Phyra75793;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 412721 414007 . - . ID=Phyra75794;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000156;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 412721 414007 . - . ID=Phyra75794;Parent=Phyra75794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 412721 414007 . - 0 ID=Phyra75794;Parent=Phyra75794;rank=1 scaffold_14 . exon 412721 414007 . - . ID=Phyra75794.1;Parent=Phyra75794;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 415525 416553 . - . ID=Phyra75795;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000157;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 415525 416553 . - . ID=Phyra75795;Parent=Phyra75795;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 415525 415948 . - 0 ID=Phyra75795;Parent=Phyra75795;rank=2 scaffold_14 . exon 415525 415948 . - . ID=Phyra75795.2;Parent=Phyra75795;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 416015 416553 . - 0 ID=Phyra75795;Parent=Phyra75795;rank=1 scaffold_14 . exon 416015 416553 . - . ID=Phyra75795.1;Parent=Phyra75795;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 416982 422845 . + . ID=Phyra75796;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000158;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 416982 422845 . + . ID=Phyra75796;Parent=Phyra75796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 416982 419016 . + 0 ID=Phyra75796;Parent=Phyra75796;rank=1 scaffold_14 . exon 416982 419016 . + . ID=Phyra75796.1;Parent=Phyra75796;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 419056 419170 . + 0 ID=Phyra75796;Parent=Phyra75796;rank=2 scaffold_14 . exon 419056 419170 . + . ID=Phyra75796.2;Parent=Phyra75796;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_14 . CDS 419531 421821 . + 0 ID=Phyra75796;Parent=Phyra75796;rank=3 scaffold_14 . CDS 421862 421878 . + 0 ID=Phyra75796;Parent=Phyra75796;rank=4 scaffold_14 . CDS 422331 422411 . + 0 ID=Phyra75796;Parent=Phyra75796;rank=5 scaffold_14 . CDS 422582 422845 . + 0 ID=Phyra75796;Parent=Phyra75796;rank=6 scaffold_14 . repeat_region 422520 422539 . ? . description=trf scaffold_14 ensembl protein_coding_gene 426756 427211 . + . ID=Phyra71359;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000024;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 426756 427211 . + . ID=Phyra71359;Parent=Phyra71359;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 426756 427211 . + 0 ID=Phyra71359;Parent=Phyra71359;rank=1 scaffold_14 . exon 426756 427211 . + . ID=Phyra71359.1;Parent=Phyra71359;constitutive=1;rank=1 scaffold_14 . exon 419531 421821 . + . ID=Phyra75796.3;Parent=Phyra75796;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_14 . exon 421862 421878 . + . ID=Phyra75796.4;Parent=Phyra75796;constitutive=1;ensembl_phase=1;rank=4 scaffold_14 . exon 422331 422411 . + . ID=Phyra75796.5;Parent=Phyra75796;constitutive=1;rank=5 scaffold_14 . exon 422582 422845 . + . ID=Phyra75796.6;Parent=Phyra75796;constitutive=1;rank=6 scaffold_14 ensembl protein_coding_gene 423315 423949 . + . ID=Phyra75797;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000159;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 423315 423949 . + . ID=Phyra75797;Parent=Phyra75797;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 423315 423608 . + 0 ID=Phyra75797;Parent=Phyra75797;rank=1 scaffold_14 . exon 423315 423608 . + . ID=Phyra75797.1;Parent=Phyra75797;constitutive=1;rank=1 scaffold_14 . CDS 423674 423820 . + 0 ID=Phyra75797;Parent=Phyra75797;rank=2 scaffold_14 . exon 423674 423820 . + . ID=Phyra75797.2;Parent=Phyra75797;constitutive=1;rank=2 scaffold_14 . CDS 423890 423949 . + 0 ID=Phyra75797;Parent=Phyra75797;rank=3 scaffold_14 . exon 423890 423949 . + . ID=Phyra75797.3;Parent=Phyra75797;constitutive=1;rank=3 scaffold_14 ensembl protein_coding_gene 424290 425293 . - . ID=Phyra75798;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000160;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 424290 425293 . - . ID=Phyra75798;Parent=Phyra75798;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 424290 424659 . - 0 ID=Phyra75798;Parent=Phyra75798;rank=4 scaffold_14 . exon 424290 424659 . - . ID=Phyra75798.4;Parent=Phyra75798;constitutive=1;ensembl_phase=2;rank=4 scaffold_14 . CDS 424727 424809 . - 0 ID=Phyra75798;Parent=Phyra75798;rank=3 scaffold_14 . exon 424727 424809 . - . ID=Phyra75798.3;Parent=Phyra75798;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_14 . CDS 424895 425101 . - 0 ID=Phyra75798;Parent=Phyra75798;rank=2 scaffold_14 . exon 424895 425101 . - . ID=Phyra75798.2;Parent=Phyra75798;constitutive=1;rank=2 scaffold_14 . CDS 425207 425293 . - 0 ID=Phyra75798;Parent=Phyra75798;rank=1 scaffold_14 . exon 425207 425293 . - . ID=Phyra75798.1;Parent=Phyra75798;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 425687 426468 . + . ID=Phyra75799;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000161;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 425687 426468 . + . ID=Phyra75799;Parent=Phyra75799;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 425687 425960 . + 0 ID=Phyra75799;Parent=Phyra75799;rank=1 scaffold_14 . exon 425687 425960 . + . ID=Phyra75799.1;Parent=Phyra75799;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 426032 426070 . + 0 ID=Phyra75799;Parent=Phyra75799;rank=2 scaffold_14 . exon 426032 426070 . + . ID=Phyra75799.2;Parent=Phyra75799;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 426188 426468 . + 0 ID=Phyra75799;Parent=Phyra75799;rank=3 scaffold_14 . exon 426188 426468 . + . ID=Phyra75799.3;Parent=Phyra75799;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 ensembl protein_coding_gene 427739 428903 . + . ID=Phyra75801;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000163;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 427739 428903 . + . ID=Phyra75801;Parent=Phyra75801;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 427739 427882 . + 0 ID=Phyra75801;Parent=Phyra75801;rank=1 scaffold_14 . exon 427739 427882 . + . ID=Phyra75801.1;Parent=Phyra75801;constitutive=1;rank=1 scaffold_14 . CDS 427949 428649 . + 0 ID=Phyra75801;Parent=Phyra75801;rank=2 scaffold_14 . exon 427949 428649 . + . ID=Phyra75801.2;Parent=Phyra75801;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_14 . CDS 428804 428903 . + 0 ID=Phyra75801;Parent=Phyra75801;rank=3 scaffold_14 . exon 428804 428903 . + . ID=Phyra75801.3;Parent=Phyra75801;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . biological_region 429596 429597 0.999 - . logic_name=eponine scaffold_14 . repeat_region 431252 431272 . ? . description=dust scaffold_14 . biological_region 431924 431928 0.999 - . logic_name=eponine scaffold_14 . biological_region 434146 434147 0.999 + . logic_name=eponine scaffold_14 . biological_region 434150 434155 0.999 - . logic_name=eponine scaffold_14 . biological_region 434235 434238 0.999 - . logic_name=eponine scaffold_14 . repeat_region 434827 434845 . ? . description=dust scaffold_14 . biological_region 436731 436735 0.999 - . logic_name=eponine scaffold_14 . biological_region 438713 438719 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 429149 429637 . - . ID=Phyra75802;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000164;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 429149 429637 . - . ID=Phyra75802;Parent=Phyra75802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 429149 429637 . - 0 ID=Phyra75802;Parent=Phyra75802;rank=1 scaffold_14 . exon 429149 429637 . - . ID=Phyra75802.1;Parent=Phyra75802;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 431760 434534 . + . ID=Phyra75803;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000165;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 431760 434534 . + . ID=Phyra75803;Parent=Phyra75803;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 431760 434534 . + 0 ID=Phyra75803;Parent=Phyra75803;rank=1 scaffold_14 . exon 431760 434534 . + . ID=Phyra75803.1;Parent=Phyra75803;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 436229 436621 . + . ID=Phyra75804;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000166;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 436229 436621 . + . ID=Phyra75804;Parent=Phyra75804;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 436229 436621 . + 0 ID=Phyra75804;Parent=Phyra75804;rank=1 scaffold_14 . exon 436229 436621 . + . ID=Phyra75804.1;Parent=Phyra75804;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 438643 440593 . + . ID=Phyra75806;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000168;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 438643 440593 . + . ID=Phyra75806;Parent=Phyra75806;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 438643 439648 . + 0 ID=Phyra75806;Parent=Phyra75806;rank=1 scaffold_14 . exon 438643 439648 . + . ID=Phyra75806.1;Parent=Phyra75806;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 439959 440593 . + 0 ID=Phyra75806;Parent=Phyra75806;rank=2 scaffold_14 ensembl protein_coding_gene 436843 437441 . - . ID=Phyra94273;biotype=protein_coding;external_name=C_scaffold_14000046;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 436843 437441 . - . ID=Phyra94273;Parent=Phyra94273;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 436843 437089 . - 0 ID=Phyra94273;Parent=Phyra94273;rank=3 scaffold_14 . exon 436843 437089 . - . ID=Phyra94273.3;Parent=Phyra94273;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 437209 437254 . - 0 ID=Phyra94273;Parent=Phyra94273;rank=2 scaffold_14 . exon 437209 437254 . - . ID=Phyra94273.2;Parent=Phyra94273;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_14 . CDS 437396 437441 . - 0 ID=Phyra94273;Parent=Phyra94273;rank=1 scaffold_14 . exon 437396 437441 . - . ID=Phyra94273.1;Parent=Phyra94273;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . repeat_region 444963 445002 . ? . description=trf scaffold_14 . repeat_region 444963 445057 . ? . description=trf scaffold_14 . repeat_region 444970 445059 . ? . description=trf scaffold_14 . repeat_region 445010 445070 . ? . description=trf scaffold_14 . repeat_region 447842 447877 . ? . description=trf scaffold_14 ensembl protein_coding_gene 444473 444643 . + . ID=Phyra41570;biotype=protein_coding;external_name=gwEuk.14.103.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 444473 444643 . + . ID=Phyra41570;Parent=Phyra41570;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 444473 444643 . + 0 ID=Phyra41570;Parent=Phyra41570;rank=1 scaffold_14 . exon 444473 444643 . + . ID=Phyra41570.1;Parent=Phyra41570;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 445011 445648 . - . ID=Phyra41576;biotype=protein_coding;external_name=gwEuk.14.109.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 445011 445648 . - . ID=Phyra41576;Parent=Phyra41576;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 445011 445105 . - 0 ID=Phyra41576;Parent=Phyra41576;rank=5 scaffold_14 . exon 445011 445105 . - . ID=Phyra41576.5;Parent=Phyra41576;constitutive=1;ensembl_phase=1;rank=5 scaffold_14 . CDS 445188 445227 . - 0 ID=Phyra41576;Parent=Phyra41576;rank=4 scaffold_14 . exon 445188 445227 . - . ID=Phyra41576.4;Parent=Phyra41576;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_14 . CDS 445297 445374 . - 0 ID=Phyra41576;Parent=Phyra41576;rank=3 scaffold_14 . exon 445297 445374 . - . ID=Phyra41576.3;Parent=Phyra41576;constitutive=1;rank=3 scaffold_14 . CDS 445447 445545 . - 0 ID=Phyra41576;Parent=Phyra41576;rank=2 scaffold_14 . exon 445447 445545 . - . ID=Phyra41576.2;Parent=Phyra41576;constitutive=1;rank=2 scaffold_14 . CDS 445607 445648 . - 0 ID=Phyra41576;Parent=Phyra41576;rank=1 scaffold_14 . exon 445607 445648 . - . ID=Phyra41576.1;Parent=Phyra41576;constitutive=1;rank=1 scaffold_14 . exon 439959 440593 . + . ID=Phyra75806.2;Parent=Phyra75806;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 ensembl protein_coding_gene 446215 446520 . + . ID=Phyra75810;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000172;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 446215 446520 . + . ID=Phyra75810;Parent=Phyra75810;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 446215 446520 . + 0 ID=Phyra75810;Parent=Phyra75810;rank=1 scaffold_14 . exon 446215 446520 . + . ID=Phyra75810.1;Parent=Phyra75810;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 446757 447342 . - . ID=Phyra75811;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000173;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 446757 447342 . - . ID=Phyra75811;Parent=Phyra75811;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 446757 446938 . - 0 ID=Phyra75811;Parent=Phyra75811;rank=2 scaffold_14 . exon 446757 446938 . - . ID=Phyra75811.2;Parent=Phyra75811;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 447006 447342 . - 0 ID=Phyra75811;Parent=Phyra75811;rank=1 scaffold_14 . exon 447006 447342 . - . ID=Phyra75811.1;Parent=Phyra75811;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 447518 449215 . - . ID=Phyra75812;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000174;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 447518 449215 . - . ID=Phyra75812;Parent=Phyra75812;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 447518 449215 . - 0 ID=Phyra75812;Parent=Phyra75812;rank=1 scaffold_14 . exon 447518 449215 . - . ID=Phyra75812.1;Parent=Phyra75812;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 440682 443147 . - . ID=Phyra94275;biotype=protein_coding;external_name=C_scaffold_14000048;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 440682 443147 . - . ID=Phyra94275;Parent=Phyra94275;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 440682 441138 . - 0 ID=Phyra94275;Parent=Phyra94275;rank=6 scaffold_14 . exon 440682 441138 . - . ID=Phyra94275.6;Parent=Phyra94275;constitutive=1;ensembl_phase=2;rank=6 scaffold_14 . CDS 441193 441561 . - 0 ID=Phyra94275;Parent=Phyra94275;rank=5 scaffold_14 . exon 441193 441561 . - . ID=Phyra94275.5;Parent=Phyra94275;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_14 . CDS 441919 442140 . - 0 ID=Phyra94275;Parent=Phyra94275;rank=4 scaffold_14 . exon 441919 442140 . - . ID=Phyra94275.4;Parent=Phyra94275;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_14 . CDS 442221 442346 . - 0 ID=Phyra94275;Parent=Phyra94275;rank=3 scaffold_14 . exon 442221 442346 . - . ID=Phyra94275.3;Parent=Phyra94275;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_14 . CDS 442412 442546 . - 0 ID=Phyra94275;Parent=Phyra94275;rank=2 scaffold_14 . exon 442412 442546 . - . ID=Phyra94275.2;Parent=Phyra94275;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_14 . CDS 442621 443147 . - 0 ID=Phyra94275;Parent=Phyra94275;rank=1 scaffold_14 . exon 442621 443147 . - . ID=Phyra94275.1;Parent=Phyra94275;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . biological_region 449073 449077 0.999 + . logic_name=eponine scaffold_14 . biological_region 449112 449120 0.999 - . logic_name=eponine scaffold_14 . biological_region 449115 449122 0.999 + . logic_name=eponine scaffold_14 . biological_region 449164 449169 0.999 - . logic_name=eponine scaffold_14 . biological_region 449228 449231 0.999 - . logic_name=eponine scaffold_14 . biological_region 450473 450480 0.999 - . logic_name=eponine scaffold_14 . biological_region 450510 450516 0.999 - . logic_name=eponine scaffold_14 . repeat_region 451486 451500 . ? . description=dust scaffold_14 . repeat_region 452606 452636 . ? . description=dust scaffold_14 . biological_region 455735 455740 0.999 + . logic_name=eponine scaffold_14 . biological_region 455748 455749 0.999 + . logic_name=eponine scaffold_14 . biological_region 455837 455837 0.999 - . logic_name=eponine scaffold_14 . biological_region 457203 457204 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 454789 457255 . - . ID=Phyra75814;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000176;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 454789 457255 . - . ID=Phyra75814;Parent=Phyra75814;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 454789 454956 . - 0 ID=Phyra75814;Parent=Phyra75814;rank=5 scaffold_14 . exon 454789 454956 . - . ID=Phyra75814.5;Parent=Phyra75814;constitutive=1;rank=5 scaffold_14 . CDS 455005 456343 . - 0 ID=Phyra75814;Parent=Phyra75814;rank=4 scaffold_14 . exon 455005 456343 . - . ID=Phyra75814.4;Parent=Phyra75814;constitutive=1;ensembl_phase=2;rank=4 scaffold_14 . CDS 456415 456480 . - 0 ID=Phyra75814;Parent=Phyra75814;rank=3 scaffold_14 . exon 456415 456480 . - . ID=Phyra75814.3;Parent=Phyra75814;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_14 . CDS 456569 456823 . - 0 ID=Phyra75814;Parent=Phyra75814;rank=2 scaffold_14 . exon 456569 456823 . - . ID=Phyra75814.2;Parent=Phyra75814;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_14 . CDS 456885 457255 . - 0 ID=Phyra75814;Parent=Phyra75814;rank=1 scaffold_14 . exon 456885 457255 . - . ID=Phyra75814.1;Parent=Phyra75814;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 458664 459617 . + . ID=Phyra75815;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000177;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 458664 459617 . + . ID=Phyra75815;Parent=Phyra75815;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 458664 458862 . + 0 ID=Phyra75815;Parent=Phyra75815;rank=1 scaffold_14 . exon 458664 458862 . + . ID=Phyra75815.1;Parent=Phyra75815;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 458930 459586 . + 0 ID=Phyra75815;Parent=Phyra75815;rank=2 scaffold_14 . exon 458930 459586 . + . ID=Phyra75815.2;Parent=Phyra75815;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 459613 459617 . + 0 ID=Phyra75815;Parent=Phyra75815;rank=3 scaffold_14 ensembl protein_coding_gene 452087 453668 . + . ID=Phyra94281;biotype=protein_coding;external_name=C_scaffold_14000054;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 452087 453668 . + . ID=Phyra94281;Parent=Phyra94281;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 452087 452214 . + 0 ID=Phyra94281;Parent=Phyra94281;rank=1 scaffold_14 . exon 452087 452214 . + . ID=Phyra94281.1;Parent=Phyra94281;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 452239 452523 . + 0 ID=Phyra94281;Parent=Phyra94281;rank=2 scaffold_14 . exon 452239 452523 . + . ID=Phyra94281.2;Parent=Phyra94281;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_14 . CDS 452597 452698 . + 0 ID=Phyra94281;Parent=Phyra94281;rank=3 scaffold_14 . exon 452597 452698 . + . ID=Phyra94281.3;Parent=Phyra94281;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_14 . CDS 452764 452904 . + 0 ID=Phyra94281;Parent=Phyra94281;rank=4 scaffold_14 . exon 452764 452904 . + . ID=Phyra94281.4;Parent=Phyra94281;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_14 . CDS 452979 453104 . + 0 ID=Phyra94281;Parent=Phyra94281;rank=5 scaffold_14 . exon 452979 453104 . + . ID=Phyra94281.5;Parent=Phyra94281;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_14 . CDS 453180 453481 . + 0 ID=Phyra94281;Parent=Phyra94281;rank=6 scaffold_14 . exon 453180 453481 . + . ID=Phyra94281.6;Parent=Phyra94281;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_14 . CDS 453658 453668 . + 0 ID=Phyra94281;Parent=Phyra94281;rank=7 scaffold_14 . exon 453658 453668 . + . ID=Phyra94281.7;Parent=Phyra94281;constitutive=1;ensembl_phase=1;rank=7 scaffold_14 . exon 459613 459617 . + . ID=Phyra75815.3;Parent=Phyra75815;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 ensembl protein_coding_gene 459733 460608 . - . ID=Phyra75816;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000178;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 459733 460608 . - . ID=Phyra75816;Parent=Phyra75816;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 459733 459972 . - 0 ID=Phyra75816;Parent=Phyra75816;rank=2 scaffold_14 . exon 459733 459972 . - . ID=Phyra75816.2;Parent=Phyra75816;constitutive=1;rank=2 scaffold_14 . CDS 460042 460608 . - 0 ID=Phyra75816;Parent=Phyra75816;rank=1 scaffold_14 . exon 460042 460608 . - . ID=Phyra75816.1;Parent=Phyra75816;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 465997 467004 . - . ID=Phyra75817;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000179;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 465997 467004 . - . ID=Phyra75817;Parent=Phyra75817;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 465997 467004 . - 0 ID=Phyra75817;Parent=Phyra75817;rank=1 scaffold_14 . exon 465997 467004 . - . ID=Phyra75817.1;Parent=Phyra75817;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 467165 467963 . + . ID=Phyra75818;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000180;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 467165 467963 . + . ID=Phyra75818;Parent=Phyra75818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 467165 467501 . + 0 ID=Phyra75818;Parent=Phyra75818;rank=1 scaffold_14 . exon 467165 467501 . + . ID=Phyra75818.1;Parent=Phyra75818;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 467564 467676 . + 0 ID=Phyra75818;Parent=Phyra75818;rank=2 scaffold_14 . exon 467564 467676 . + . ID=Phyra75818.2;Parent=Phyra75818;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 467750 467866 . + 0 ID=Phyra75818;Parent=Phyra75818;rank=3 scaffold_14 . exon 467750 467866 . + . ID=Phyra75818.3;Parent=Phyra75818;constitutive=1;rank=3 scaffold_14 . CDS 467931 467963 . + 0 ID=Phyra75818;Parent=Phyra75818;rank=4 scaffold_14 . exon 467931 467963 . + . ID=Phyra75818.4;Parent=Phyra75818;constitutive=1;rank=4 scaffold_14 ensembl protein_coding_gene 468034 468477 . - . ID=Phyra75819;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000181;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 468034 468477 . - . ID=Phyra75819;Parent=Phyra75819;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 468034 468279 . - 0 ID=Phyra75819;Parent=Phyra75819;rank=2 scaffold_14 . exon 468034 468279 . - . ID=Phyra75819.2;Parent=Phyra75819;constitutive=1;rank=2 scaffold_14 . CDS 468391 468477 . - 0 ID=Phyra75819;Parent=Phyra75819;rank=1 scaffold_14 . exon 468391 468477 . - . ID=Phyra75819.1;Parent=Phyra75819;constitutive=1;rank=1 scaffold_14 . repeat_region 469132 469139 . ? . description=dust scaffold_14 . repeat_region 469406 469414 . ? . description=dust scaffold_14 . biological_region 473759 473762 0.999 - . logic_name=eponine scaffold_14 . repeat_region 474170 474219 . ? . description=dust scaffold_14 . repeat_region 475559 475608 . ? . description=dust scaffold_14 . repeat_region 476943 478846 . ? . description=dust scaffold_14 . repeat_region 488191 488241 . ? . description=trf scaffold_14 . repeat_region 488193 488245 . ? . description=trf scaffold_14 . repeat_region 488473 488505 . ? . description=trf scaffold_14 ensembl protein_coding_gene 488388 493906 . + . ID=Phyra75820;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000182;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 488388 493906 . + . ID=Phyra75820;Parent=Phyra75820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 488388 488398 . + 0 ID=Phyra75820;Parent=Phyra75820;rank=1 scaffold_14 . exon 488388 488398 . + . ID=Phyra75820.1;Parent=Phyra75820;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 492616 492897 . + 0 ID=Phyra75820;Parent=Phyra75820;rank=2 scaffold_14 . CDS 492955 493702 . + 0 ID=Phyra75820;Parent=Phyra75820;rank=3 scaffold_14 . CDS 493889 493906 . + 0 ID=Phyra75820;Parent=Phyra75820;rank=4 scaffold_14 . repeat_region 488921 492584 . ? . description=dust scaffold_14 . biological_region 492831 492835 0.999 - . logic_name=eponine scaffold_14 . repeat_region 493722 493771 . ? . description=dust scaffold_14 . repeat_region 494452 494466 . ? . description=dust scaffold_14 . repeat_region 496354 496361 . ? . description=dust scaffold_14 . repeat_region 498151 498158 . ? . description=dust scaffold_14 . biological_region 498504 498504 0.999 + . logic_name=eponine scaffold_14 . biological_region 498708 498712 0.999 + . logic_name=eponine scaffold_14 . biological_region 498719 498721 0.999 + . logic_name=eponine scaffold_14 . exon 492616 492897 . + . ID=Phyra75820.2;Parent=Phyra75820;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_14 . exon 492955 493702 . + . ID=Phyra75820.3;Parent=Phyra75820;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . exon 493889 493906 . + . ID=Phyra75820.4;Parent=Phyra75820;constitutive=1;rank=4 scaffold_14 ensembl protein_coding_gene 498355 499254 . + . ID=Phyra94283;biotype=protein_coding;external_name=C_scaffold_14000056;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 498355 499254 . + . ID=Phyra94283;Parent=Phyra94283;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 498355 499254 . + 0 ID=Phyra94283;Parent=Phyra94283;rank=1 scaffold_14 . exon 498355 499254 . + . ID=Phyra94283.1;Parent=Phyra94283;constitutive=1;rank=1 scaffold_14 . repeat_region 501218 501312 . ? . description=trf scaffold_14 . repeat_region 502142 502180 . ? . description=trf scaffold_14 ensembl protein_coding_gene 507434 508873 . + . ID=Phyra41598;biotype=protein_coding;external_name=gwEuk.14.131.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 507434 508873 . + . ID=Phyra41598;Parent=Phyra41598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 507434 508417 . + 0 ID=Phyra41598;Parent=Phyra41598;rank=1 scaffold_14 . exon 507434 508417 . + . ID=Phyra41598.1;Parent=Phyra41598;constitutive=1;rank=1 scaffold_14 . CDS 508502 508686 . + 0 ID=Phyra41598;Parent=Phyra41598;rank=2 scaffold_14 . exon 508502 508686 . + . ID=Phyra41598.2;Parent=Phyra41598;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_14 . CDS 508759 508873 . + 0 ID=Phyra41598;Parent=Phyra41598;rank=3 scaffold_14 . exon 508759 508873 . + . ID=Phyra41598.3;Parent=Phyra41598;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 ensembl protein_coding_gene 506262 506681 . + . ID=Phyra71361;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000026;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 506262 506681 . + . ID=Phyra71361;Parent=Phyra71361;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 506262 506681 . + 0 ID=Phyra71361;Parent=Phyra71361;rank=1 scaffold_14 . exon 506262 506681 . + . ID=Phyra71361.1;Parent=Phyra71361;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 504723 505568 . + . ID=Phyra75824;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000186;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 504723 505568 . + . ID=Phyra75824;Parent=Phyra75824;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 504723 505568 . + 0 ID=Phyra75824;Parent=Phyra75824;rank=1 scaffold_14 . exon 504723 505568 . + . ID=Phyra75824.1;Parent=Phyra75824;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 499351 503112 . - . ID=Phyra94284;biotype=protein_coding;external_name=C_scaffold_14000057;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 499351 503112 . - . ID=Phyra94284;Parent=Phyra94284;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 499351 499374 . - 0 ID=Phyra94284;Parent=Phyra94284;rank=5 scaffold_14 . exon 499351 499374 . - . ID=Phyra94284.5;Parent=Phyra94284;constitutive=1;rank=5 scaffold_14 . CDS 499669 499767 . - 0 ID=Phyra94284;Parent=Phyra94284;rank=4 scaffold_14 . exon 499669 499767 . - . ID=Phyra94284.4;Parent=Phyra94284;constitutive=1;rank=4 scaffold_14 . CDS 499840 501204 . - 0 ID=Phyra94284;Parent=Phyra94284;rank=3 scaffold_14 . exon 499840 501204 . - . ID=Phyra94284.3;Parent=Phyra94284;constitutive=1;rank=3 scaffold_14 . CDS 501829 502084 . - 0 ID=Phyra94284;Parent=Phyra94284;rank=2 scaffold_14 . exon 501829 502084 . - . ID=Phyra94284.2;Parent=Phyra94284;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 502727 503112 . - 0 ID=Phyra94284;Parent=Phyra94284;rank=1 scaffold_14 . exon 502727 503112 . - . ID=Phyra94284.1;Parent=Phyra94284;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . biological_region 515646 515647 0.999 - . logic_name=eponine scaffold_14 . biological_region 516552 516557 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 515674 516162 . - . ID=Phyra71362;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000027;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 515674 516162 . - . ID=Phyra71362;Parent=Phyra71362;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 515674 516162 . - 0 ID=Phyra71362;Parent=Phyra71362;rank=1 scaffold_14 . exon 515674 516162 . - . ID=Phyra71362.1;Parent=Phyra71362;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 509853 511950 . - . ID=Phyra75827;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000189;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 509853 511950 . - . ID=Phyra75827;Parent=Phyra75827;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 509853 510029 . - 0 ID=Phyra75827;Parent=Phyra75827;rank=2 scaffold_14 . exon 509853 510029 . - . ID=Phyra75827.2;Parent=Phyra75827;constitutive=1;rank=2 scaffold_14 . CDS 510100 511950 . - 0 ID=Phyra75827;Parent=Phyra75827;rank=1 scaffold_14 . exon 510100 511950 . - . ID=Phyra75827.1;Parent=Phyra75827;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 512154 513212 . + . ID=Phyra75828;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000190;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 512154 513212 . + . ID=Phyra75828;Parent=Phyra75828;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 512154 513212 . + 0 ID=Phyra75828;Parent=Phyra75828;rank=1 scaffold_14 . exon 512154 513212 . + . ID=Phyra75828.1;Parent=Phyra75828;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 513395 514379 . - . ID=Phyra75829;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000191;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 513395 514379 . - . ID=Phyra75829;Parent=Phyra75829;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 513395 513643 . - 0 ID=Phyra75829;Parent=Phyra75829;rank=6 scaffold_14 . exon 513395 513643 . - . ID=Phyra75829.6;Parent=Phyra75829;constitutive=1;rank=6 scaffold_14 . CDS 513718 513799 . - 0 ID=Phyra75829;Parent=Phyra75829;rank=5 scaffold_14 . exon 513718 513799 . - . ID=Phyra75829.5;Parent=Phyra75829;constitutive=1;ensembl_phase=2;rank=5 scaffold_14 . CDS 513882 514025 . - 0 ID=Phyra75829;Parent=Phyra75829;rank=4 scaffold_14 . exon 513882 514025 . - . ID=Phyra75829.4;Parent=Phyra75829;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_14 . CDS 514092 514191 . - 0 ID=Phyra75829;Parent=Phyra75829;rank=3 scaffold_14 . exon 514092 514191 . - . ID=Phyra75829.3;Parent=Phyra75829;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_14 . CDS 514248 514285 . - 0 ID=Phyra75829;Parent=Phyra75829;rank=2 scaffold_14 . exon 514248 514285 . - . ID=Phyra75829.2;Parent=Phyra75829;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 514375 514379 . - 0 ID=Phyra75829;Parent=Phyra75829;rank=1 scaffold_14 . exon 514375 514379 . - . ID=Phyra75829.1;Parent=Phyra75829;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 516733 518946 . + . ID=Phyra75831;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000193;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 516733 518946 . + . ID=Phyra75831;Parent=Phyra75831;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 516733 518064 . + 0 ID=Phyra75831;Parent=Phyra75831;rank=1 scaffold_14 . exon 516733 518064 . + . ID=Phyra75831.1;Parent=Phyra75831;constitutive=1;rank=1 scaffold_14 . CDS 518266 518565 . + 0 ID=Phyra75831;Parent=Phyra75831;rank=2 scaffold_14 . exon 518266 518565 . + . ID=Phyra75831.2;Parent=Phyra75831;constitutive=1;rank=2 scaffold_14 . CDS 518638 518946 . + 0 ID=Phyra75831;Parent=Phyra75831;rank=3 scaffold_14 . exon 518638 518946 . + . ID=Phyra75831.3;Parent=Phyra75831;constitutive=1;rank=3 scaffold_14 ensembl protein_coding_gene 514770 515122 . + . ID=Phyra94288;biotype=protein_coding;external_name=C_scaffold_14000061;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 514770 515122 . + . ID=Phyra94288;Parent=Phyra94288;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 514770 514959 . + 0 ID=Phyra94288;Parent=Phyra94288;rank=1 scaffold_14 . exon 514770 514959 . + . ID=Phyra94288.1;Parent=Phyra94288;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 515040 515122 . + 0 ID=Phyra94288;Parent=Phyra94288;rank=2 scaffold_14 . exon 515040 515122 . + . ID=Phyra94288.2;Parent=Phyra94288;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . repeat_region 523499 523526 . ? . description=trf scaffold_14 . repeat_region 525117 525125 . ? . description=dust scaffold_14 . repeat_region 525962 526003 . ? . description=trf scaffold_14 . repeat_region 527917 527947 . ? . description=trf scaffold_14 ensembl protein_coding_gene 520063 521453 . + . ID=Phyra75832;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000194;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 520063 521453 . + . ID=Phyra75832;Parent=Phyra75832;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 520063 520359 . + 0 ID=Phyra75832;Parent=Phyra75832;rank=1 scaffold_14 . exon 520063 520359 . + . ID=Phyra75832.1;Parent=Phyra75832;constitutive=1;rank=1 scaffold_14 . CDS 520446 521453 . + 0 ID=Phyra75832;Parent=Phyra75832;rank=2 scaffold_14 . exon 520446 521453 . + . ID=Phyra75832.2;Parent=Phyra75832;constitutive=1;rank=2 scaffold_14 ensembl protein_coding_gene 526097 530138 . - . ID=Phyra75833;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000195;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 526097 530138 . - . ID=Phyra75833;Parent=Phyra75833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 526097 529853 . - 0 ID=Phyra75833;Parent=Phyra75833;rank=2 scaffold_14 . exon 526097 529853 . - . ID=Phyra75833.2;Parent=Phyra75833;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 529879 530138 . - 0 ID=Phyra75833;Parent=Phyra75833;rank=1 scaffold_14 . biological_region 532190 532190 0.999 - . logic_name=eponine scaffold_14 . biological_region 536252 536255 0.999 - . logic_name=eponine scaffold_14 . exon 529879 530138 . - . ID=Phyra75833.1;Parent=Phyra75833;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 535718 536212 . + . ID=Phyra75834;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000196;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 535718 536212 . + . ID=Phyra75834;Parent=Phyra75834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 535718 536212 . + 0 ID=Phyra75834;Parent=Phyra75834;rank=1 scaffold_14 . exon 535718 536212 . + . ID=Phyra75834.1;Parent=Phyra75834;constitutive=1;rank=1 scaffold_14 . repeat_region 539269 539359 . ? . description=trf scaffold_14 . repeat_region 539272 539316 . ? . description=trf scaffold_14 . repeat_region 539274 539359 . ? . description=dust scaffold_14 . repeat_region 540892 540900 . ? . description=dust scaffold_14 . repeat_region 544380 544391 . ? . description=dust scaffold_14 . repeat_region 547032 547050 . ? . description=dust scaffold_14 ensembl protein_coding_gene 539921 540516 . + . ID=Phyra41624;biotype=protein_coding;external_name=gwEuk.14.157.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 539921 540516 . + . ID=Phyra41624;Parent=Phyra41624;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 539921 539946 . + 0 ID=Phyra41624;Parent=Phyra41624;rank=1 scaffold_14 . exon 539921 539946 . + . ID=Phyra41624.1;Parent=Phyra41624;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 540024 540516 . + 0 ID=Phyra41624;Parent=Phyra41624;rank=2 scaffold_14 . exon 540024 540516 . + . ID=Phyra41624.2;Parent=Phyra41624;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 ensembl protein_coding_gene 541733 543104 . - . ID=Phyra71364;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000029;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 541733 543104 . - . ID=Phyra71364;Parent=Phyra71364;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 541733 542087 . - 0 ID=Phyra71364;Parent=Phyra71364;rank=6 scaffold_14 . exon 541733 542087 . - . ID=Phyra71364.6;Parent=Phyra71364;constitutive=1;ensembl_phase=2;rank=6 scaffold_14 . CDS 542172 542440 . - 0 ID=Phyra71364;Parent=Phyra71364;rank=5 scaffold_14 . exon 542172 542440 . - . ID=Phyra71364.5;Parent=Phyra71364;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_14 . CDS 542534 542632 . - 0 ID=Phyra71364;Parent=Phyra71364;rank=4 scaffold_14 . exon 542534 542632 . - . ID=Phyra71364.4;Parent=Phyra71364;constitutive=1;rank=4 scaffold_14 . CDS 542712 542851 . - 0 ID=Phyra71364;Parent=Phyra71364;rank=3 scaffold_14 . exon 542712 542851 . - . ID=Phyra71364.3;Parent=Phyra71364;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 542933 542974 . - 0 ID=Phyra71364;Parent=Phyra71364;rank=2 scaffold_14 . exon 542933 542974 . - . ID=Phyra71364.2;Parent=Phyra71364;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 543050 543104 . - 0 ID=Phyra71364;Parent=Phyra71364;rank=1 scaffold_14 . exon 543050 543104 . - . ID=Phyra71364.1;Parent=Phyra71364;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 544551 545096 . + . ID=Phyra75837;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000199;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 544551 545096 . + . ID=Phyra75837;Parent=Phyra75837;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 544551 545096 . + 0 ID=Phyra75837;Parent=Phyra75837;rank=1 scaffold_14 . exon 544551 545096 . + . ID=Phyra75837.1;Parent=Phyra75837;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 545754 546779 . + . ID=Phyra75838;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000200;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 545754 546779 . + . ID=Phyra75838;Parent=Phyra75838;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 545754 546779 . + 0 ID=Phyra75838;Parent=Phyra75838;rank=1 scaffold_14 . exon 545754 546779 . + . ID=Phyra75838.1;Parent=Phyra75838;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 547599 548906 . - . ID=Phyra75839;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000201;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 547599 548906 . - . ID=Phyra75839;Parent=Phyra75839;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 547599 548906 . - 0 ID=Phyra75839;Parent=Phyra75839;rank=1 scaffold_14 . exon 547599 548906 . - . ID=Phyra75839.1;Parent=Phyra75839;constitutive=1;rank=1 scaffold_14 . biological_region 550049 550051 0.999 - . logic_name=eponine scaffold_14 . biological_region 551398 551401 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 549507 550370 . - . ID=Phyra75840;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000202;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 549507 550370 . - . ID=Phyra75840;Parent=Phyra75840;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 549507 550370 . - 0 ID=Phyra75840;Parent=Phyra75840;rank=1 scaffold_14 . exon 549507 550370 . - . ID=Phyra75840.1;Parent=Phyra75840;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 551439 555655 . - . ID=Phyra75841;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000203;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 551439 555655 . - . ID=Phyra75841;Parent=Phyra75841;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 551439 551999 . - 0 ID=Phyra75841;Parent=Phyra75841;rank=11 scaffold_14 . exon 551439 551999 . - . ID=Phyra75841.11;Parent=Phyra75841;constitutive=1;rank=11 scaffold_14 . CDS 552516 552861 . - 0 ID=Phyra75841;Parent=Phyra75841;rank=10 scaffold_14 . exon 552516 552861 . - . ID=Phyra75841.10;Parent=Phyra75841;constitutive=1;ensembl_phase=2;rank=10 scaffold_14 . CDS 552930 553012 . - 0 ID=Phyra75841;Parent=Phyra75841;rank=9 scaffold_14 . exon 552930 553012 . - . ID=Phyra75841.9;Parent=Phyra75841;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_14 . CDS 553097 553160 . - 0 ID=Phyra75841;Parent=Phyra75841;rank=8 scaffold_14 . exon 553097 553160 . - . ID=Phyra75841.8;Parent=Phyra75841;constitutive=1;ensembl_phase=2;rank=8 scaffold_14 . CDS 553234 553440 . - 0 ID=Phyra75841;Parent=Phyra75841;rank=7 scaffold_14 . exon 553234 553440 . - . ID=Phyra75841.7;Parent=Phyra75841;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_14 . CDS 553503 553670 . - 0 ID=Phyra75841;Parent=Phyra75841;rank=6 scaffold_14 . exon 553503 553670 . - . ID=Phyra75841.6;Parent=Phyra75841;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_14 . CDS 553741 553854 . - 0 ID=Phyra75841;Parent=Phyra75841;rank=5 scaffold_14 . exon 553741 553854 . - . ID=Phyra75841.5;Parent=Phyra75841;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_14 . CDS 554110 554115 . - 0 ID=Phyra75841;Parent=Phyra75841;rank=4 scaffold_14 . exon 554110 554115 . - . ID=Phyra75841.4;Parent=Phyra75841;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_14 . CDS 554340 555121 . - 0 ID=Phyra75841;Parent=Phyra75841;rank=3 scaffold_14 . exon 554340 555121 . - . ID=Phyra75841.3;Parent=Phyra75841;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_14 . CDS 555193 555439 . - 0 ID=Phyra75841;Parent=Phyra75841;rank=2 scaffold_14 . exon 555193 555439 . - . ID=Phyra75841.2;Parent=Phyra75841;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 555501 555655 . - 0 ID=Phyra75841;Parent=Phyra75841;rank=1 scaffold_14 . exon 555501 555655 . - . ID=Phyra75841.1;Parent=Phyra75841;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 557341 557845 . + . ID=Phyra75842;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000204;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 557341 557845 . + . ID=Phyra75842;Parent=Phyra75842;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 557341 557616 . + 0 ID=Phyra75842;Parent=Phyra75842;rank=1 scaffold_14 . exon 557341 557616 . + . ID=Phyra75842.1;Parent=Phyra75842;constitutive=1;rank=1 scaffold_14 . CDS 557687 557845 . + 0 ID=Phyra75842;Parent=Phyra75842;rank=2 scaffold_14 . exon 557687 557845 . + . ID=Phyra75842.2;Parent=Phyra75842;constitutive=1;rank=2 scaffold_14 ensembl protein_coding_gene 558354 559736 . - . ID=Phyra75843;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000205;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 558354 559736 . - . ID=Phyra75843;Parent=Phyra75843;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 558354 559736 . - 0 ID=Phyra75843;Parent=Phyra75843;rank=1 scaffold_14 . exon 558354 559736 . - . ID=Phyra75843.1;Parent=Phyra75843;constitutive=1;rank=1 scaffold_14 . repeat_region 570373 570381 . ? . description=dust scaffold_14 . repeat_region 574482 574531 . ? . description=dust scaffold_14 . repeat_region 575173 576302 . ? . description=dust scaffold_14 . repeat_region 577126 577175 . ? . description=dust scaffold_14 . biological_region 578461 578462 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 577339 579009 . - . ID=Phyra75844;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000206;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 577339 579009 . - . ID=Phyra75844;Parent=Phyra75844;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 577339 577377 . - 0 ID=Phyra75844;Parent=Phyra75844;rank=4 scaffold_14 . exon 577339 577377 . - . ID=Phyra75844.4;Parent=Phyra75844;constitutive=1;rank=4 scaffold_14 . CDS 577436 577645 . - 0 ID=Phyra75844;Parent=Phyra75844;rank=3 scaffold_14 . exon 577436 577645 . - . ID=Phyra75844.3;Parent=Phyra75844;constitutive=1;rank=3 scaffold_14 . CDS 577709 577868 . - 0 ID=Phyra75844;Parent=Phyra75844;rank=2 scaffold_14 . exon 577709 577868 . - . ID=Phyra75844.2;Parent=Phyra75844;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 577916 579009 . - 0 ID=Phyra75844;Parent=Phyra75844;rank=1 scaffold_14 . exon 577916 579009 . - . ID=Phyra75844.1;Parent=Phyra75844;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . repeat_region 581622 581654 . ? . description=trf scaffold_14 . repeat_region 583966 583993 . ? . description=trf scaffold_14 . repeat_region 584195 584265 . ? . description=trf scaffold_14 . repeat_region 589792 589804 . ? . description=dust scaffold_14 . repeat_region 592968 593013 . ? . description=dust scaffold_14 . biological_region 594636 594640 0.999 - . logic_name=eponine scaffold_14 . biological_region 596580 596583 0.999 + . logic_name=eponine scaffold_14 . biological_region 596593 596597 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 594512 595706 . + . ID=Phyra71365;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000030;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 594512 595706 . + . ID=Phyra71365;Parent=Phyra71365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 594512 594589 . + 0 ID=Phyra71365;Parent=Phyra71365;rank=1 scaffold_14 . exon 594512 594589 . + . ID=Phyra71365.1;Parent=Phyra71365;constitutive=1;rank=1 scaffold_14 . CDS 594669 594777 . + 0 ID=Phyra71365;Parent=Phyra71365;rank=2 scaffold_14 . exon 594669 594777 . + . ID=Phyra71365.2;Parent=Phyra71365;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_14 . CDS 594846 595470 . + 0 ID=Phyra71365;Parent=Phyra71365;rank=3 scaffold_14 . exon 594846 595470 . + . ID=Phyra71365.3;Parent=Phyra71365;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_14 . CDS 595547 595706 . + 0 ID=Phyra71365;Parent=Phyra71365;rank=4 scaffold_14 . exon 595547 595706 . + . ID=Phyra71365.4;Parent=Phyra71365;constitutive=1;ensembl_phase=2;rank=4 scaffold_14 ensembl protein_coding_gene 592789 593643 . + . ID=Phyra75845;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000207;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 592789 593643 . + . ID=Phyra75845;Parent=Phyra75845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 592789 593643 . + 0 ID=Phyra75845;Parent=Phyra75845;rank=1 scaffold_14 . exon 592789 593643 . + . ID=Phyra75845.1;Parent=Phyra75845;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 595836 597144 . + . ID=Phyra75847;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000209;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 595836 597144 . + . ID=Phyra75847;Parent=Phyra75847;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 595836 596068 . + 0 ID=Phyra75847;Parent=Phyra75847;rank=1 scaffold_14 . exon 595836 596068 . + . ID=Phyra75847.1;Parent=Phyra75847;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 596482 596869 . + 0 ID=Phyra75847;Parent=Phyra75847;rank=2 scaffold_14 . exon 596482 596869 . + . ID=Phyra75847.2;Parent=Phyra75847;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 596950 597144 . + 0 ID=Phyra75847;Parent=Phyra75847;rank=3 scaffold_14 . exon 596950 597144 . + . ID=Phyra75847.3;Parent=Phyra75847;constitutive=1;rank=3 scaffold_14 ensembl protein_coding_gene 597454 599557 . - . ID=Phyra75848;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000210;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 597454 599557 . - . ID=Phyra75848;Parent=Phyra75848;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 597454 597723 . - 0 ID=Phyra75848;Parent=Phyra75848;rank=5 scaffold_14 . exon 597454 597723 . - . ID=Phyra75848.5;Parent=Phyra75848;constitutive=1;rank=5 scaffold_14 . CDS 598039 598042 . - 0 ID=Phyra75848;Parent=Phyra75848;rank=4 scaffold_14 . exon 598039 598042 . - . ID=Phyra75848.4;Parent=Phyra75848;constitutive=1;ensembl_phase=2;rank=4 scaffold_14 . CDS 598266 598372 . - 0 ID=Phyra75848;Parent=Phyra75848;rank=3 scaffold_14 . exon 598266 598372 . - . ID=Phyra75848.3;Parent=Phyra75848;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_14 . CDS 598453 598602 . - 0 ID=Phyra75848;Parent=Phyra75848;rank=2 scaffold_14 . exon 598453 598602 . - . ID=Phyra75848.2;Parent=Phyra75848;constitutive=1;rank=2 scaffold_14 . CDS 599159 599557 . - 0 ID=Phyra75848;Parent=Phyra75848;rank=1 scaffold_14 . repeat_region 606345 606367 . ? . description=trf scaffold_14 . exon 599159 599557 . - . ID=Phyra75848.1;Parent=Phyra75848;constitutive=1;rank=1 scaffold_14 . repeat_region 610031 610045 . ? . description=dust scaffold_14 . repeat_region 612015 612022 . ? . description=dust scaffold_14 ensembl protein_coding_gene 612645 613595 . + . ID=Phyra41642;biotype=protein_coding;external_name=gwEuk.14.175.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 612645 613595 . + . ID=Phyra41642;Parent=Phyra41642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 612645 613595 . + 0 ID=Phyra41642;Parent=Phyra41642;rank=1 scaffold_14 . exon 612645 613595 . + . ID=Phyra41642.1;Parent=Phyra41642;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 614235 614706 . - . ID=Phyra71367;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000032;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 614235 614706 . - . ID=Phyra71367;Parent=Phyra71367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 614235 614431 . - 0 ID=Phyra71367;Parent=Phyra71367;rank=2 scaffold_14 . exon 614235 614431 . - . ID=Phyra71367.2;Parent=Phyra71367;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 614517 614706 . - 0 ID=Phyra71367;Parent=Phyra71367;rank=1 scaffold_14 . exon 614517 614706 . - . ID=Phyra71367.1;Parent=Phyra71367;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . biological_region 625628 625629 0.999 - . logic_name=eponine scaffold_14 . biological_region 627082 627083 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 621900 623086 . - . ID=Phyra41659;biotype=protein_coding;external_name=gwEuk.14.192.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 621900 623086 . - . ID=Phyra41659;Parent=Phyra41659;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 621900 622727 . - 0 ID=Phyra41659;Parent=Phyra41659;rank=2 scaffold_14 . exon 621900 622727 . - . ID=Phyra41659.2;Parent=Phyra41659;constitutive=1;rank=2 scaffold_14 . CDS 622790 623086 . - 0 ID=Phyra41659;Parent=Phyra41659;rank=1 scaffold_14 . exon 622790 623086 . - . ID=Phyra41659.1;Parent=Phyra41659;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 623868 624555 . + . ID=Phyra75852;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000214;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 623868 624555 . + . ID=Phyra75852;Parent=Phyra75852;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 623868 623888 . + 0 ID=Phyra75852;Parent=Phyra75852;rank=1 scaffold_14 . exon 623868 623888 . + . ID=Phyra75852.1;Parent=Phyra75852;constitutive=1;rank=1 scaffold_14 . CDS 623969 624009 . + 0 ID=Phyra75852;Parent=Phyra75852;rank=2 scaffold_14 . exon 623969 624009 . + . ID=Phyra75852.2;Parent=Phyra75852;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_14 . CDS 624078 624136 . + 0 ID=Phyra75852;Parent=Phyra75852;rank=3 scaffold_14 . exon 624078 624136 . + . ID=Phyra75852.3;Parent=Phyra75852;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 624199 624281 . + 0 ID=Phyra75852;Parent=Phyra75852;rank=4 scaffold_14 . exon 624199 624281 . + . ID=Phyra75852.4;Parent=Phyra75852;constitutive=1;ensembl_phase=1;rank=4 scaffold_14 . CDS 624349 624555 . + 0 ID=Phyra75852;Parent=Phyra75852;rank=5 scaffold_14 . exon 624349 624555 . + . ID=Phyra75852.5;Parent=Phyra75852;constitutive=1;rank=5 scaffold_14 ensembl protein_coding_gene 625136 626054 . - . ID=Phyra75853;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000215;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 625136 626054 . - . ID=Phyra75853;Parent=Phyra75853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 625136 625342 . - 0 ID=Phyra75853;Parent=Phyra75853;rank=2 scaffold_14 . exon 625136 625342 . - . ID=Phyra75853.2;Parent=Phyra75853;constitutive=1;rank=2 scaffold_14 . CDS 625404 626054 . - 0 ID=Phyra75853;Parent=Phyra75853;rank=1 scaffold_14 . exon 625404 626054 . - . ID=Phyra75853.1;Parent=Phyra75853;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 626917 629365 . - . ID=Phyra75854;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000216;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 626917 629365 . - . ID=Phyra75854;Parent=Phyra75854;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 626917 626959 . - 0 ID=Phyra75854;Parent=Phyra75854;rank=6 scaffold_14 . exon 626917 626959 . - . ID=Phyra75854.6;Parent=Phyra75854;constitutive=1;ensembl_phase=2;rank=6 scaffold_14 . CDS 627023 627283 . - 0 ID=Phyra75854;Parent=Phyra75854;rank=5 scaffold_14 . exon 627023 627283 . - . ID=Phyra75854.5;Parent=Phyra75854;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_14 . CDS 627659 627900 . - 0 ID=Phyra75854;Parent=Phyra75854;rank=4 scaffold_14 . exon 627659 627900 . - . ID=Phyra75854.4;Parent=Phyra75854;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_14 . CDS 627973 628116 . - 0 ID=Phyra75854;Parent=Phyra75854;rank=3 scaffold_14 . exon 627973 628116 . - . ID=Phyra75854.3;Parent=Phyra75854;constitutive=1;rank=3 scaffold_14 . CDS 628147 629049 . - 0 ID=Phyra75854;Parent=Phyra75854;rank=2 scaffold_14 . exon 628147 629049 . - . ID=Phyra75854.2;Parent=Phyra75854;constitutive=1;rank=2 scaffold_14 . CDS 629327 629365 . - 0 ID=Phyra75854;Parent=Phyra75854;rank=1 scaffold_14 . repeat_region 631180 631205 . ? . description=trf scaffold_14 . repeat_region 637147 637171 . ? . description=trf scaffold_14 ensembl protein_coding_gene 636188 637165 . - . ID=Phyra41669;biotype=protein_coding;external_name=gwEuk.14.202.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 636188 637165 . - . ID=Phyra41669;Parent=Phyra41669;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 636188 636529 . - 0 ID=Phyra41669;Parent=Phyra41669;rank=3 scaffold_14 . exon 636188 636529 . - . ID=Phyra41669.3;Parent=Phyra41669;constitutive=1;rank=3 scaffold_14 . CDS 636608 636732 . - 0 ID=Phyra41669;Parent=Phyra41669;rank=2 scaffold_14 . exon 636608 636732 . - . ID=Phyra41669.2;Parent=Phyra41669;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 636802 637165 . - 0 ID=Phyra41669;Parent=Phyra41669;rank=1 scaffold_14 . exon 636802 637165 . - . ID=Phyra41669.1;Parent=Phyra41669;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 637515 638093 . + . ID=Phyra71369;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000034;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 637515 638093 . + . ID=Phyra71369;Parent=Phyra71369;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 637515 638093 . + 0 ID=Phyra71369;Parent=Phyra71369;rank=1 scaffold_14 . exon 637515 638093 . + . ID=Phyra71369.1;Parent=Phyra71369;constitutive=1;rank=1 scaffold_14 . exon 629327 629365 . - . ID=Phyra75854.1;Parent=Phyra75854;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 631201 635767 . - . ID=Phyra75855;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000217;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 631201 635767 . - . ID=Phyra75855;Parent=Phyra75855;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 631201 631219 . - 0 ID=Phyra75855;Parent=Phyra75855;rank=9 scaffold_14 . exon 631201 631219 . - . ID=Phyra75855.9;Parent=Phyra75855;constitutive=1;ensembl_phase=2;rank=9 scaffold_14 . CDS 631342 631537 . - 0 ID=Phyra75855;Parent=Phyra75855;rank=8 scaffold_14 . exon 631342 631537 . - . ID=Phyra75855.8;Parent=Phyra75855;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_14 . CDS 631871 631946 . - 0 ID=Phyra75855;Parent=Phyra75855;rank=7 scaffold_14 . exon 631871 631946 . - . ID=Phyra75855.7;Parent=Phyra75855;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_14 . CDS 632537 632952 . - 0 ID=Phyra75855;Parent=Phyra75855;rank=6 scaffold_14 . exon 632537 632952 . - . ID=Phyra75855.6;Parent=Phyra75855;constitutive=1;ensembl_phase=1;rank=6 scaffold_14 . CDS 633262 634173 . - 0 ID=Phyra75855;Parent=Phyra75855;rank=5 scaffold_14 . exon 633262 634173 . - . ID=Phyra75855.5;Parent=Phyra75855;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_14 . CDS 634642 634691 . - 0 ID=Phyra75855;Parent=Phyra75855;rank=4 scaffold_14 . exon 634642 634691 . - . ID=Phyra75855.4;Parent=Phyra75855;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_14 . CDS 634937 634983 . - 0 ID=Phyra75855;Parent=Phyra75855;rank=3 scaffold_14 . exon 634937 634983 . - . ID=Phyra75855.3;Parent=Phyra75855;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_14 . CDS 635107 635285 . - 0 ID=Phyra75855;Parent=Phyra75855;rank=2 scaffold_14 . exon 635107 635285 . - . ID=Phyra75855.2;Parent=Phyra75855;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 635359 635767 . - 0 ID=Phyra75855;Parent=Phyra75855;rank=1 scaffold_14 . exon 635359 635767 . - . ID=Phyra75855.1;Parent=Phyra75855;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 638517 642052 . - . ID=Phyra75858;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000220;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 638517 642052 . - . ID=Phyra75858;Parent=Phyra75858;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 638517 638951 . - 0 ID=Phyra75858;Parent=Phyra75858;rank=6 scaffold_14 . exon 638517 638951 . - . ID=Phyra75858.6;Parent=Phyra75858;constitutive=1;rank=6 scaffold_14 . CDS 639027 639098 . - 0 ID=Phyra75858;Parent=Phyra75858;rank=5 scaffold_14 . CDS 639172 639438 . - 0 ID=Phyra75858;Parent=Phyra75858;rank=4 scaffold_14 . CDS 639511 641574 . - 0 ID=Phyra75858;Parent=Phyra75858;rank=3 scaffold_14 . CDS 641636 641866 . - 0 ID=Phyra75858;Parent=Phyra75858;rank=2 scaffold_14 . CDS 642011 642052 . - 0 ID=Phyra75858;Parent=Phyra75858;rank=1 scaffold_14 . biological_region 638656 638662 0.999 - . logic_name=eponine scaffold_14 . biological_region 638688 638692 0.999 - . logic_name=eponine scaffold_14 . biological_region 638712 638715 0.999 + . logic_name=eponine scaffold_14 . biological_region 638818 638823 0.999 - . logic_name=eponine scaffold_14 . repeat_region 642720 642768 . ? . description=dust scaffold_14 . repeat_region 643931 643979 . ? . description=dust scaffold_14 . repeat_region 646256 646295 . ? . description=dust scaffold_14 . biological_region 646443 646447 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 646128 647586 . + . ID=Phyra71370;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_14000035;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 646128 647586 . + . ID=Phyra71370;Parent=Phyra71370;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 646128 646346 . + 0 ID=Phyra71370;Parent=Phyra71370;rank=1 scaffold_14 . exon 646128 646346 . + . ID=Phyra71370.1;Parent=Phyra71370;constitutive=1;rank=1 scaffold_14 . CDS 646386 646679 . + 0 ID=Phyra71370;Parent=Phyra71370;rank=2 scaffold_14 . exon 646386 646679 . + . ID=Phyra71370.2;Parent=Phyra71370;constitutive=1;rank=2 scaffold_14 . CDS 646756 647586 . + 0 ID=Phyra71370;Parent=Phyra71370;rank=3 scaffold_14 . exon 646756 647586 . + . ID=Phyra71370.3;Parent=Phyra71370;constitutive=1;rank=3 scaffold_14 . exon 639027 639098 . - . ID=Phyra75858.5;Parent=Phyra75858;constitutive=1;rank=5 scaffold_14 . exon 639172 639438 . - . ID=Phyra75858.4;Parent=Phyra75858;constitutive=1;rank=4 scaffold_14 . exon 639511 641574 . - . ID=Phyra75858.3;Parent=Phyra75858;constitutive=1;rank=3 scaffold_14 . exon 641636 641866 . - . ID=Phyra75858.2;Parent=Phyra75858;constitutive=1;rank=2 scaffold_14 . exon 642011 642052 . - . ID=Phyra75858.1;Parent=Phyra75858;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 642455 642916 . + . ID=Phyra75859;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000221;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 642455 642916 . + . ID=Phyra75859;Parent=Phyra75859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 642455 642916 . + 0 ID=Phyra75859;Parent=Phyra75859;rank=1 scaffold_14 . exon 642455 642916 . + . ID=Phyra75859.1;Parent=Phyra75859;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 643783 644244 . - . ID=Phyra75860;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000222;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 643783 644244 . - . ID=Phyra75860;Parent=Phyra75860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 643783 644244 . - 0 ID=Phyra75860;Parent=Phyra75860;rank=1 scaffold_14 . exon 643783 644244 . - . ID=Phyra75860.1;Parent=Phyra75860;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 647700 652009 . - . ID=Phyra75862;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000224;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 647700 652009 . - . ID=Phyra75862;Parent=Phyra75862;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 647700 651526 . - 0 ID=Phyra75862;Parent=Phyra75862;rank=3 scaffold_14 . exon 647700 651526 . - . ID=Phyra75862.3;Parent=Phyra75862;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_14 . CDS 651680 651844 . - 0 ID=Phyra75862;Parent=Phyra75862;rank=2 scaffold_14 . CDS 651944 652009 . - 0 ID=Phyra75862;Parent=Phyra75862;rank=1 scaffold_14 . repeat_region 649319 649358 . ? . description=trf scaffold_14 ensembl protein_coding_gene 657438 658178 . - . ID=Phyra41683;biotype=protein_coding;external_name=gwEuk.14.216.1;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 657438 658178 . - . ID=Phyra41683;Parent=Phyra41683;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 657438 657553 . - 0 ID=Phyra41683;Parent=Phyra41683;rank=5 scaffold_14 . exon 657438 657553 . - . ID=Phyra41683.5;Parent=Phyra41683;constitutive=1;ensembl_phase=1;rank=5 scaffold_14 . CDS 657625 657733 . - 0 ID=Phyra41683;Parent=Phyra41683;rank=4 scaffold_14 . exon 657625 657733 . - . ID=Phyra41683.4;Parent=Phyra41683;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_14 . CDS 657801 657856 . - 0 ID=Phyra41683;Parent=Phyra41683;rank=3 scaffold_14 . exon 657801 657856 . - . ID=Phyra41683.3;Parent=Phyra41683;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 657920 658004 . - 0 ID=Phyra41683;Parent=Phyra41683;rank=2 scaffold_14 . exon 657920 658004 . - . ID=Phyra41683.2;Parent=Phyra41683;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_14 . CDS 658086 658178 . - 0 ID=Phyra41683;Parent=Phyra41683;rank=1 scaffold_14 . exon 658086 658178 . - . ID=Phyra41683.1;Parent=Phyra41683;constitutive=1;rank=1 scaffold_14 . exon 651680 651844 . - . ID=Phyra75862.2;Parent=Phyra75862;constitutive=1;rank=2 scaffold_14 . exon 651944 652009 . - . ID=Phyra75862.1;Parent=Phyra75862;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 654450 655588 . - . ID=Phyra75863;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000225;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 654450 655588 . - . ID=Phyra75863;Parent=Phyra75863;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 654450 655530 . - 0 ID=Phyra75863;Parent=Phyra75863;rank=2 scaffold_14 . exon 654450 655530 . - . ID=Phyra75863.2;Parent=Phyra75863;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 655581 655588 . - 0 ID=Phyra75863;Parent=Phyra75863;rank=1 scaffold_14 . exon 655581 655588 . - . ID=Phyra75863.1;Parent=Phyra75863;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 656009 656947 . + . ID=Phyra75864;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000226;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 656009 656947 . + . ID=Phyra75864;Parent=Phyra75864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 656009 656947 . + 0 ID=Phyra75864;Parent=Phyra75864;rank=1 scaffold_14 . exon 656009 656947 . + . ID=Phyra75864.1;Parent=Phyra75864;constitutive=1;rank=1 scaffold_14 . repeat_region 660398 670355 . ? . description=dust scaffold_14 ensembl protein_coding_gene 670571 673374 . - . ID=Phyra75866;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_14000228;logic_name=jgi_phyra1 scaffold_14 ensembl transcript 670571 673374 . - . ID=Phyra75866;Parent=Phyra75866;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_14 . CDS 670571 671322 . - 0 ID=Phyra75866;Parent=Phyra75866;rank=2 scaffold_14 . exon 670571 671322 . - . ID=Phyra75866.2;Parent=Phyra75866;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 672780 673374 . - 0 ID=Phyra75866;Parent=Phyra75866;rank=1 scaffold_14 . exon 672780 673374 . - . ID=Phyra75866.1;Parent=Phyra75866;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_12 1 689251 scaffold_12 . repeat_region 152 186 . ? . description=trf scaffold_12 . repeat_region 280 650 . - . description=Polinton-1_PI scaffold_12 . biological_region 6674 6678 0.999 - . logic_name=eponine scaffold_12 . biological_region 7367 7369 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 6973 7693 . - . ID=Phyra75254;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000001;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 6973 7693 . - . ID=Phyra75254;Parent=Phyra75254;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 6973 7607 . - 0 ID=Phyra75254;Parent=Phyra75254;rank=2 scaffold_12 . exon 6973 7607 . - . ID=Phyra75254.2;Parent=Phyra75254;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 7639 7693 . - 0 ID=Phyra75254;Parent=Phyra75254;rank=1 scaffold_12 . exon 7639 7693 . - . ID=Phyra75254.1;Parent=Phyra75254;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 8652 11684 . + . ID=Phyra94087;biotype=protein_coding;external_name=C_scaffold_12000001;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 8652 11684 . + . ID=Phyra94087;Parent=Phyra94087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 8652 9592 . + 0 ID=Phyra94087;Parent=Phyra94087;rank=1 scaffold_12 . exon 8652 9592 . + . ID=Phyra94087.1;Parent=Phyra94087;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 9821 9934 . + 0 ID=Phyra94087;Parent=Phyra94087;rank=2 scaffold_12 . exon 9821 9934 . + . ID=Phyra94087.2;Parent=Phyra94087;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_12 . CDS 10211 10352 . + 0 ID=Phyra94087;Parent=Phyra94087;rank=3 scaffold_12 . CDS 10638 11546 . + 0 ID=Phyra94087;Parent=Phyra94087;rank=4 scaffold_12 . CDS 11589 11684 . + 0 ID=Phyra94087;Parent=Phyra94087;rank=5 scaffold_12 ensembl protein_coding_gene 19691 22807 . + . ID=Phyra75259;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000006;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 19691 22807 . + . ID=Phyra75259;Parent=Phyra75259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 19691 22807 . + 0 ID=Phyra75259;Parent=Phyra75259;rank=1 scaffold_12 . exon 19691 22807 . + . ID=Phyra75259.1;Parent=Phyra75259;constitutive=1;rank=1 scaffold_12 . exon 10211 10352 . + . ID=Phyra94087.3;Parent=Phyra94087;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . exon 10638 11546 . + . ID=Phyra94087.4;Parent=Phyra94087;constitutive=1;rank=4 scaffold_12 . exon 11589 11684 . + . ID=Phyra94087.5;Parent=Phyra94087;constitutive=1;rank=5 scaffold_12 ensembl protein_coding_gene 11804 17220 . + . ID=Phyra94088;biotype=protein_coding;external_name=C_scaffold_12000002;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 11804 17220 . + . ID=Phyra94088;Parent=Phyra94088;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 11804 11913 . + 0 ID=Phyra94088;Parent=Phyra94088;rank=1 scaffold_12 . exon 11804 11913 . + . ID=Phyra94088.1;Parent=Phyra94088;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 11978 12098 . + 0 ID=Phyra94088;Parent=Phyra94088;rank=2 scaffold_12 . exon 11978 12098 . + . ID=Phyra94088.2;Parent=Phyra94088;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 12203 12289 . + 0 ID=Phyra94088;Parent=Phyra94088;rank=3 scaffold_12 . exon 12203 12289 . + . ID=Phyra94088.3;Parent=Phyra94088;constitutive=1;rank=3 scaffold_12 . CDS 12363 15263 . + 0 ID=Phyra94088;Parent=Phyra94088;rank=4 scaffold_12 . exon 12363 15263 . + . ID=Phyra94088.4;Parent=Phyra94088;constitutive=1;rank=4 scaffold_12 . CDS 15351 15509 . + 0 ID=Phyra94088;Parent=Phyra94088;rank=5 scaffold_12 . exon 15351 15509 . + . ID=Phyra94088.5;Parent=Phyra94088;constitutive=1;rank=5 scaffold_12 . CDS 15691 15834 . + 0 ID=Phyra94088;Parent=Phyra94088;rank=6 scaffold_12 . exon 15691 15834 . + . ID=Phyra94088.6;Parent=Phyra94088;constitutive=1;rank=6 scaffold_12 . CDS 15948 16034 . + 0 ID=Phyra94088;Parent=Phyra94088;rank=7 scaffold_12 . exon 15948 16034 . + . ID=Phyra94088.7;Parent=Phyra94088;constitutive=1;rank=7 scaffold_12 . CDS 16122 16247 . + 0 ID=Phyra94088;Parent=Phyra94088;rank=8 scaffold_12 . exon 16122 16247 . + . ID=Phyra94088.8;Parent=Phyra94088;constitutive=1;rank=8 scaffold_12 . CDS 16335 16482 . + 0 ID=Phyra94088;Parent=Phyra94088;rank=9 scaffold_12 . exon 16335 16482 . + . ID=Phyra94088.9;Parent=Phyra94088;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_12 . CDS 16553 17080 . + 0 ID=Phyra94088;Parent=Phyra94088;rank=10 scaffold_12 . exon 16553 17080 . + . ID=Phyra94088.10;Parent=Phyra94088;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_12 . CDS 17114 17220 . + 0 ID=Phyra94088;Parent=Phyra94088;rank=11 scaffold_12 . exon 17114 17220 . + . ID=Phyra94088.11;Parent=Phyra94088;constitutive=1;ensembl_phase=1;rank=11 scaffold_12 . biological_region 26581 26582 0.999 - . logic_name=eponine scaffold_12 . biological_region 26965 26968 0.999 - . logic_name=eponine scaffold_12 . repeat_region 29584 29621 . ? . description=trf scaffold_12 . biological_region 29632 29632 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 23482 24646 . + . ID=Phyra71292;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_12000001;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 23482 24646 . + . ID=Phyra71292;Parent=Phyra71292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 23482 23895 . + 0 ID=Phyra71292;Parent=Phyra71292;rank=1 scaffold_12 . exon 23482 23895 . + . ID=Phyra71292.1;Parent=Phyra71292;constitutive=1;rank=1 scaffold_12 . CDS 23963 24085 . + 0 ID=Phyra71292;Parent=Phyra71292;rank=2 scaffold_12 . exon 23963 24085 . + . ID=Phyra71292.2;Parent=Phyra71292;constitutive=1;rank=2 scaffold_12 . CDS 24155 24646 . + 0 ID=Phyra71292;Parent=Phyra71292;rank=3 scaffold_12 . exon 24155 24646 . + . ID=Phyra71292.3;Parent=Phyra71292;constitutive=1;rank=3 scaffold_12 ensembl protein_coding_gene 25062 27273 . + . ID=Phyra75261;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000008;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 25062 27273 . + . ID=Phyra75261;Parent=Phyra75261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 25062 25101 . + 0 ID=Phyra75261;Parent=Phyra75261;rank=1 scaffold_12 . exon 25062 25101 . + . ID=Phyra75261.1;Parent=Phyra75261;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 25166 25509 . + 0 ID=Phyra75261;Parent=Phyra75261;rank=2 scaffold_12 . exon 25166 25509 . + . ID=Phyra75261.2;Parent=Phyra75261;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 25696 25955 . + 0 ID=Phyra75261;Parent=Phyra75261;rank=3 scaffold_12 . exon 25696 25955 . + . ID=Phyra75261.3;Parent=Phyra75261;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_12 . CDS 26025 27273 . + 0 ID=Phyra75261;Parent=Phyra75261;rank=4 scaffold_12 . exon 26025 27273 . + . ID=Phyra75261.4;Parent=Phyra75261;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 ensembl protein_coding_gene 27370 30075 . - . ID=Phyra75262;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000009;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 27370 30075 . - . ID=Phyra75262;Parent=Phyra75262;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 27370 27497 . - 0 ID=Phyra75262;Parent=Phyra75262;rank=7 scaffold_12 . exon 27370 27497 . - . ID=Phyra75262.7;Parent=Phyra75262;constitutive=1;ensembl_phase=1;rank=7 scaffold_12 . CDS 27585 27764 . - 0 ID=Phyra75262;Parent=Phyra75262;rank=6 scaffold_12 . exon 27585 27764 . - . ID=Phyra75262.6;Parent=Phyra75262;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_12 . CDS 27837 27986 . - 0 ID=Phyra75262;Parent=Phyra75262;rank=5 scaffold_12 . exon 27837 27986 . - . ID=Phyra75262.5;Parent=Phyra75262;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_12 . CDS 28056 28733 . - 0 ID=Phyra75262;Parent=Phyra75262;rank=4 scaffold_12 . exon 28056 28733 . - . ID=Phyra75262.4;Parent=Phyra75262;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 28828 28869 . - 0 ID=Phyra75262;Parent=Phyra75262;rank=3 scaffold_12 . exon 28828 28869 . - . ID=Phyra75262.3;Parent=Phyra75262;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 29405 29783 . - 0 ID=Phyra75262;Parent=Phyra75262;rank=2 scaffold_12 . exon 29405 29783 . - . ID=Phyra75262.2;Parent=Phyra75262;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 29860 30075 . - 0 ID=Phyra75262;Parent=Phyra75262;rank=1 scaffold_12 . exon 29860 30075 . - . ID=Phyra75262.1;Parent=Phyra75262;constitutive=1;rank=1 scaffold_12 . repeat_region 36650 36669 . ? . description=dust scaffold_12 ensembl protein_coding_gene 33549 34598 . - . ID=Phyra71293;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_12000002;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 33549 34598 . - . ID=Phyra71293;Parent=Phyra71293;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 33549 34598 . - 0 ID=Phyra71293;Parent=Phyra71293;rank=1 scaffold_12 . exon 33549 34598 . - . ID=Phyra71293.1;Parent=Phyra71293;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 37606 40308 . - . ID=Phyra71294;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_12000003;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 37606 40308 . - . ID=Phyra71294;Parent=Phyra71294;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 37606 40308 . - 0 ID=Phyra71294;Parent=Phyra71294;rank=1 scaffold_12 . exon 37606 40308 . - . ID=Phyra71294.1;Parent=Phyra71294;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 31275 33414 . + . ID=Phyra75264;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000011;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 31275 33414 . + . ID=Phyra75264;Parent=Phyra75264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 31275 32120 . + 0 ID=Phyra75264;Parent=Phyra75264;rank=1 scaffold_12 . exon 31275 32120 . + . ID=Phyra75264.1;Parent=Phyra75264;constitutive=1;rank=1 scaffold_12 . CDS 32233 33414 . + 0 ID=Phyra75264;Parent=Phyra75264;rank=2 scaffold_12 . exon 32233 33414 . + . ID=Phyra75264.2;Parent=Phyra75264;constitutive=1;rank=2 scaffold_12 ensembl protein_coding_gene 30216 31089 . + . ID=Phyra94092;biotype=protein_coding;external_name=C_scaffold_12000006;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 30216 31089 . + . ID=Phyra94092;Parent=Phyra94092;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 30216 30622 . + 0 ID=Phyra94092;Parent=Phyra94092;rank=1 scaffold_12 . exon 30216 30622 . + . ID=Phyra94092.1;Parent=Phyra94092;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 30693 31089 . + 0 ID=Phyra94092;Parent=Phyra94092;rank=2 scaffold_12 . exon 30693 31089 . + . ID=Phyra94092.2;Parent=Phyra94092;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . biological_region 39960 39964 0.999 - . logic_name=eponine scaffold_12 . biological_region 40035 40039 0.999 - . logic_name=eponine scaffold_12 . biological_region 42848 42852 0.999 + . logic_name=eponine scaffold_12 . biological_region 43118 43118 0.999 - . logic_name=eponine scaffold_12 . repeat_region 53645 53924 . ? . description=trf scaffold_12 . repeat_region 53749 53777 . ? . description=trf scaffold_12 . repeat_region 58425 58436 . ? . description=dust scaffold_12 . repeat_region 58973 59022 . ? . description=dust scaffold_12 ensembl protein_coding_gene 53116 53968 . + . ID=Phyra75267;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000014;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 53116 53968 . + . ID=Phyra75267;Parent=Phyra75267;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 53116 53151 . + 0 ID=Phyra75267;Parent=Phyra75267;rank=1 scaffold_12 . exon 53116 53151 . + . ID=Phyra75267.1;Parent=Phyra75267;constitutive=1;rank=1 scaffold_12 . CDS 53340 53516 . + 0 ID=Phyra75267;Parent=Phyra75267;rank=2 scaffold_12 . exon 53340 53516 . + . ID=Phyra75267.2;Parent=Phyra75267;constitutive=1;rank=2 scaffold_12 . CDS 53603 53968 . + 0 ID=Phyra75267;Parent=Phyra75267;rank=3 scaffold_12 . exon 53603 53968 . + . ID=Phyra75267.3;Parent=Phyra75267;constitutive=1;rank=3 scaffold_12 . biological_region 63635 63639 0.999 + . logic_name=eponine scaffold_12 . biological_region 63710 63714 0.999 + . logic_name=eponine scaffold_12 . biological_region 64171 64173 0.999 - . logic_name=eponine scaffold_12 . biological_region 64995 64998 0.999 + . logic_name=eponine scaffold_12 . biological_region 65020 65022 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 67983 69467 . - . ID=Phyra71295;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_12000004;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 67983 69467 . - . ID=Phyra71295;Parent=Phyra71295;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 67983 69467 . - 0 ID=Phyra71295;Parent=Phyra71295;rank=1 scaffold_12 . exon 67983 69467 . - . ID=Phyra71295.1;Parent=Phyra71295;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 63365 65170 . + . ID=Phyra75268;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000015;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 63365 65170 . + . ID=Phyra75268;Parent=Phyra75268;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 63365 64660 . + 0 ID=Phyra75268;Parent=Phyra75268;rank=1 scaffold_12 . exon 63365 64660 . + . ID=Phyra75268.1;Parent=Phyra75268;constitutive=1;rank=1 scaffold_12 . CDS 64727 65170 . + 0 ID=Phyra75268;Parent=Phyra75268;rank=2 scaffold_12 . exon 64727 65170 . + . ID=Phyra75268.2;Parent=Phyra75268;constitutive=1;rank=2 scaffold_12 ensembl protein_coding_gene 69889 71412 . - . ID=Phyra75270;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000017;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 69889 71412 . - . ID=Phyra75270;Parent=Phyra75270;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 69889 71412 . - 0 ID=Phyra75270;Parent=Phyra75270;rank=1 scaffold_12 . exon 69889 71412 . - . ID=Phyra75270.1;Parent=Phyra75270;constitutive=1;rank=1 scaffold_12 . repeat_region 74112 74123 . ? . description=dust scaffold_12 ensembl protein_coding_gene 74982 76976 . + . ID=Phyra71296;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_12000005;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 74982 76976 . + . ID=Phyra71296;Parent=Phyra71296;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 74982 76976 . + 0 ID=Phyra71296;Parent=Phyra71296;rank=1 scaffold_12 . exon 74982 76976 . + . ID=Phyra71296.1;Parent=Phyra71296;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 72110 73606 . - . ID=Phyra75271;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000018;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 72110 73606 . - . ID=Phyra75271;Parent=Phyra75271;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 72110 73606 . - 0 ID=Phyra75271;Parent=Phyra75271;rank=1 scaffold_12 . exon 72110 73606 . - . ID=Phyra75271.1;Parent=Phyra75271;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 77137 78518 . + . ID=Phyra75273;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000020;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 77137 78518 . + . ID=Phyra75273;Parent=Phyra75273;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 77137 78242 . + 0 ID=Phyra75273;Parent=Phyra75273;rank=1 scaffold_12 . exon 77137 78242 . + . ID=Phyra75273.1;Parent=Phyra75273;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 78387 78484 . + 0 ID=Phyra75273;Parent=Phyra75273;rank=2 scaffold_12 . exon 78387 78484 . + . ID=Phyra75273.2;Parent=Phyra75273;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 78508 78518 . + 0 ID=Phyra75273;Parent=Phyra75273;rank=3 scaffold_12 . exon 78508 78518 . + . ID=Phyra75273.3;Parent=Phyra75273;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . biological_region 89020 89024 0.999 - . logic_name=eponine scaffold_12 . biological_region 89073 89079 0.999 + . logic_name=eponine scaffold_12 . biological_region 89595 89598 0.999 - . logic_name=eponine scaffold_12 . biological_region 89654 89660 0.999 - . logic_name=eponine scaffold_12 . biological_region 89711 89717 0.999 + . logic_name=eponine scaffold_12 . biological_region 89732 89735 0.999 - . logic_name=eponine scaffold_12 . biological_region 89755 89758 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 82683 83210 . + . ID=Phyra75274;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000021;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 82683 83210 . + . ID=Phyra75274;Parent=Phyra75274;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 82683 82796 . + 0 ID=Phyra75274;Parent=Phyra75274;rank=1 scaffold_12 . exon 82683 82796 . + . ID=Phyra75274.1;Parent=Phyra75274;constitutive=1;rank=1 scaffold_12 . CDS 82878 83210 . + 0 ID=Phyra75274;Parent=Phyra75274;rank=2 scaffold_12 . exon 82878 83210 . + . ID=Phyra75274.2;Parent=Phyra75274;constitutive=1;rank=2 scaffold_12 ensembl protein_coding_gene 84397 86772 . + . ID=Phyra75275;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000022;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 84397 86772 . + . ID=Phyra75275;Parent=Phyra75275;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 84397 86772 . + 0 ID=Phyra75275;Parent=Phyra75275;rank=1 scaffold_12 . exon 84397 86772 . + . ID=Phyra75275.1;Parent=Phyra75275;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 88256 91520 . + . ID=Phyra75276;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000023;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 88256 91520 . + . ID=Phyra75276;Parent=Phyra75276;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 88256 89347 . + 0 ID=Phyra75276;Parent=Phyra75276;rank=1 scaffold_12 . exon 88256 89347 . + . ID=Phyra75276.1;Parent=Phyra75276;constitutive=1;rank=1 scaffold_12 . CDS 89487 91520 . + 0 ID=Phyra75276;Parent=Phyra75276;rank=2 scaffold_12 . exon 89487 91520 . + . ID=Phyra75276.2;Parent=Phyra75276;constitutive=1;rank=2 scaffold_12 . repeat_region 91611 91624 . ? . description=dust scaffold_12 ensembl protein_coding_gene 97434 98648 . - . ID=Phyra75278;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000025;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 97434 98648 . - . ID=Phyra75278;Parent=Phyra75278;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 97434 98648 . - 0 ID=Phyra75278;Parent=Phyra75278;rank=1 scaffold_12 . exon 97434 98648 . - . ID=Phyra75278.1;Parent=Phyra75278;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 98964 99782 . - . ID=Phyra75279;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000026;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 98964 99782 . - . ID=Phyra75279;Parent=Phyra75279;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 98964 99119 . - 0 ID=Phyra75279;Parent=Phyra75279;rank=5 scaffold_12 . exon 98964 99119 . - . ID=Phyra75279.5;Parent=Phyra75279;constitutive=1;rank=5 scaffold_12 . CDS 99192 99341 . - 0 ID=Phyra75279;Parent=Phyra75279;rank=4 scaffold_12 . exon 99192 99341 . - . ID=Phyra75279.4;Parent=Phyra75279;constitutive=1;rank=4 scaffold_12 . CDS 99423 99503 . - 0 ID=Phyra75279;Parent=Phyra75279;rank=3 scaffold_12 . exon 99423 99503 . - . ID=Phyra75279.3;Parent=Phyra75279;constitutive=1;rank=3 scaffold_12 . CDS 99546 99593 . - 0 ID=Phyra75279;Parent=Phyra75279;rank=2 scaffold_12 . exon 99546 99593 . - . ID=Phyra75279.2;Parent=Phyra75279;constitutive=1;rank=2 scaffold_12 . CDS 99648 99782 . - 0 ID=Phyra75279;Parent=Phyra75279;rank=1 scaffold_12 . exon 99648 99782 . - . ID=Phyra75279.1;Parent=Phyra75279;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 92596 93271 . - . ID=Phyra94094;biotype=protein_coding;external_name=C_scaffold_12000008;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 92596 93271 . - . ID=Phyra94094;Parent=Phyra94094;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 92596 92632 . - 0 ID=Phyra94094;Parent=Phyra94094;rank=3 scaffold_12 . exon 92596 92632 . - . ID=Phyra94094.3;Parent=Phyra94094;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 92709 93061 . - 0 ID=Phyra94094;Parent=Phyra94094;rank=2 scaffold_12 . exon 92709 93061 . - . ID=Phyra94094.2;Parent=Phyra94094;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_12 . CDS 93149 93271 . - 0 ID=Phyra94094;Parent=Phyra94094;rank=1 scaffold_12 . exon 93149 93271 . - . ID=Phyra94094.1;Parent=Phyra94094;constitutive=1;rank=1 scaffold_12 . biological_region 100008 100010 0.999 + . logic_name=eponine scaffold_12 . repeat_region 100549 100568 . ? . description=trf scaffold_12 . biological_region 101697 101700 0.999 + . logic_name=eponine scaffold_12 . biological_region 102929 102932 0.999 + . logic_name=eponine scaffold_12 . biological_region 102982 102985 0.999 - . logic_name=eponine scaffold_12 . biological_region 103097 103097 0.999 + . logic_name=eponine scaffold_12 . biological_region 103116 103118 0.999 + . logic_name=eponine scaffold_12 . biological_region 103179 103183 0.999 - . logic_name=eponine scaffold_12 . biological_region 103316 103316 0.999 + . logic_name=eponine scaffold_12 . biological_region 103661 103661 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 99920 101062 . - . ID=Phyra75280;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000027;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 99920 101062 . - . ID=Phyra75280;Parent=Phyra75280;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 99920 101062 . - 0 ID=Phyra75280;Parent=Phyra75280;rank=1 scaffold_12 . exon 99920 101062 . - . ID=Phyra75280.1;Parent=Phyra75280;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 102837 104567 . + . ID=Phyra75281;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000028;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 102837 104567 . + . ID=Phyra75281;Parent=Phyra75281;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 102837 104567 . + 0 ID=Phyra75281;Parent=Phyra75281;rank=1 scaffold_12 . exon 102837 104567 . + . ID=Phyra75281.1;Parent=Phyra75281;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 104829 111818 . - . ID=Phyra75282;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000029;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 104829 111818 . - . ID=Phyra75282;Parent=Phyra75282;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 104829 108019 . - 0 ID=Phyra75282;Parent=Phyra75282;rank=6 scaffold_12 . exon 104829 108019 . - . ID=Phyra75282.6;Parent=Phyra75282;constitutive=1;ensembl_phase=1;rank=6 scaffold_12 . CDS 108176 108419 . - 0 ID=Phyra75282;Parent=Phyra75282;rank=5 scaffold_12 . exon 108176 108419 . - . ID=Phyra75282.5;Parent=Phyra75282;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_12 . CDS 108516 108664 . - 0 ID=Phyra75282;Parent=Phyra75282;rank=4 scaffold_12 . exon 108516 108664 . - . ID=Phyra75282.4;Parent=Phyra75282;constitutive=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 108734 109161 . - 0 ID=Phyra75282;Parent=Phyra75282;rank=3 scaffold_12 . exon 108734 109161 . - . ID=Phyra75282.3;Parent=Phyra75282;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 109246 111234 . - 0 ID=Phyra75282;Parent=Phyra75282;rank=2 scaffold_12 . exon 109246 111234 . - . ID=Phyra75282.2;Parent=Phyra75282;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_12 . CDS 111304 111818 . - 0 ID=Phyra75282;Parent=Phyra75282;rank=1 scaffold_12 . repeat_region 113284 113296 . ? . description=dust scaffold_12 . exon 111304 111818 . - . ID=Phyra75282.1;Parent=Phyra75282;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 114041 118971 . + . ID=Phyra75283;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000030;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 114041 118971 . + . ID=Phyra75283;Parent=Phyra75283;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 114041 114258 . + 0 ID=Phyra75283;Parent=Phyra75283;rank=1 scaffold_12 . exon 114041 114258 . + . ID=Phyra75283.1;Parent=Phyra75283;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 114399 118971 . + 0 ID=Phyra75283;Parent=Phyra75283;rank=2 scaffold_12 . exon 114399 118971 . + . ID=Phyra75283.2;Parent=Phyra75283;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 ensembl protein_coding_gene 119122 123209 . - . ID=Phyra75284;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000031;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 119122 123209 . - . ID=Phyra75284;Parent=Phyra75284;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 119122 119207 . - 0 ID=Phyra75284;Parent=Phyra75284;rank=12 scaffold_12 . exon 119122 119207 . - . ID=Phyra75284.12;Parent=Phyra75284;constitutive=1;ensembl_phase=1;rank=12 scaffold_12 . CDS 119271 119480 . - 0 ID=Phyra75284;Parent=Phyra75284;rank=11 scaffold_12 . exon 119271 119480 . - . ID=Phyra75284.11;Parent=Phyra75284;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_12 . CDS 119540 119881 . - 0 ID=Phyra75284;Parent=Phyra75284;rank=10 scaffold_12 . exon 119540 119881 . - . ID=Phyra75284.10;Parent=Phyra75284;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_12 . CDS 120030 120105 . - 0 ID=Phyra75284;Parent=Phyra75284;rank=9 scaffold_12 . CDS 120164 120803 . - 0 ID=Phyra75284;Parent=Phyra75284;rank=8 scaffold_12 . CDS 120897 121120 . - 0 ID=Phyra75284;Parent=Phyra75284;rank=7 scaffold_12 . CDS 121191 121714 . - 0 ID=Phyra75284;Parent=Phyra75284;rank=6 scaffold_12 . CDS 121811 121812 . - 0 ID=Phyra75284;Parent=Phyra75284;rank=5 scaffold_12 . CDS 121980 122008 . - 0 ID=Phyra75284;Parent=Phyra75284;rank=4 scaffold_12 . CDS 122076 122115 . - 0 ID=Phyra75284;Parent=Phyra75284;rank=3 scaffold_12 . CDS 122146 122462 . - 0 ID=Phyra75284;Parent=Phyra75284;rank=2 scaffold_12 . CDS 122541 123209 . - 0 ID=Phyra75284;Parent=Phyra75284;rank=1 scaffold_12 . biological_region 125961 125964 0.999 - . logic_name=eponine scaffold_12 . repeat_region 127820 127861 . ? . description=trf scaffold_12 . exon 120030 120105 . - . ID=Phyra75284.9;Parent=Phyra75284;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_12 . exon 120164 120803 . - . ID=Phyra75284.8;Parent=Phyra75284;constitutive=1;ensembl_phase=2;rank=8 scaffold_12 . exon 120897 121120 . - . ID=Phyra75284.7;Parent=Phyra75284;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_12 . exon 121191 121714 . - . ID=Phyra75284.6;Parent=Phyra75284;constitutive=1;ensembl_phase=1;rank=6 scaffold_12 . exon 121811 121812 . - . ID=Phyra75284.5;Parent=Phyra75284;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_12 . exon 121980 122008 . - . ID=Phyra75284.4;Parent=Phyra75284;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_12 . exon 122076 122115 . - . ID=Phyra75284.3;Parent=Phyra75284;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . exon 122146 122462 . - . ID=Phyra75284.2;Parent=Phyra75284;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_12 . exon 122541 123209 . - . ID=Phyra75284.1;Parent=Phyra75284;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 123742 126462 . + . ID=Phyra75285;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000032;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 123742 126462 . + . ID=Phyra75285;Parent=Phyra75285;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 123742 124859 . + 0 ID=Phyra75285;Parent=Phyra75285;rank=1 scaffold_12 . exon 123742 124859 . + . ID=Phyra75285.1;Parent=Phyra75285;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 124957 124981 . + 0 ID=Phyra75285;Parent=Phyra75285;rank=2 scaffold_12 . exon 124957 124981 . + . ID=Phyra75285.2;Parent=Phyra75285;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 125014 125119 . + 0 ID=Phyra75285;Parent=Phyra75285;rank=3 scaffold_12 . exon 125014 125119 . + . ID=Phyra75285.3;Parent=Phyra75285;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_12 . CDS 125264 125529 . + 0 ID=Phyra75285;Parent=Phyra75285;rank=4 scaffold_12 . exon 125264 125529 . + . ID=Phyra75285.4;Parent=Phyra75285;constitutive=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 125803 126462 . + 0 ID=Phyra75285;Parent=Phyra75285;rank=5 scaffold_12 . exon 125803 126462 . + . ID=Phyra75285.5;Parent=Phyra75285;constitutive=1;rank=5 scaffold_12 ensembl protein_coding_gene 129446 130153 . + . ID=Phyra75286;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000033;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 129446 130153 . + . ID=Phyra75286;Parent=Phyra75286;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 129446 130153 . + 0 ID=Phyra75286;Parent=Phyra75286;rank=1 scaffold_12 . exon 129446 130153 . + . ID=Phyra75286.1;Parent=Phyra75286;constitutive=1;rank=1 scaffold_12 . repeat_region 137966 137976 . ? . description=dust scaffold_12 . repeat_region 139300 139324 . ? . description=dust scaffold_12 ensembl protein_coding_gene 130803 131552 . + . ID=Phyra75287;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000034;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 130803 131552 . + . ID=Phyra75287;Parent=Phyra75287;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 130803 131552 . + 0 ID=Phyra75287;Parent=Phyra75287;rank=1 scaffold_12 . exon 130803 131552 . + . ID=Phyra75287.1;Parent=Phyra75287;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 133086 133887 . - . ID=Phyra75288;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000035;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 133086 133887 . - . ID=Phyra75288;Parent=Phyra75288;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 133086 133380 . - 0 ID=Phyra75288;Parent=Phyra75288;rank=3 scaffold_12 . exon 133086 133380 . - . ID=Phyra75288.3;Parent=Phyra75288;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 133450 133744 . - 0 ID=Phyra75288;Parent=Phyra75288;rank=2 scaffold_12 . exon 133450 133744 . - . ID=Phyra75288.2;Parent=Phyra75288;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 133821 133887 . - 0 ID=Phyra75288;Parent=Phyra75288;rank=1 scaffold_12 . exon 133821 133887 . - . ID=Phyra75288.1;Parent=Phyra75288;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 134243 136359 . + . ID=Phyra75289;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000036;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 134243 136359 . + . ID=Phyra75289;Parent=Phyra75289;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 134243 134248 . + 0 ID=Phyra75289;Parent=Phyra75289;rank=1 scaffold_12 . exon 134243 134248 . + . ID=Phyra75289.1;Parent=Phyra75289;constitutive=1;rank=1 scaffold_12 . CDS 134333 134456 . + 0 ID=Phyra75289;Parent=Phyra75289;rank=2 scaffold_12 . exon 134333 134456 . + . ID=Phyra75289.2;Parent=Phyra75289;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 134545 134998 . + 0 ID=Phyra75289;Parent=Phyra75289;rank=3 scaffold_12 . exon 134545 134998 . + . ID=Phyra75289.3;Parent=Phyra75289;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_12 . CDS 135069 135205 . + 0 ID=Phyra75289;Parent=Phyra75289;rank=4 scaffold_12 . exon 135069 135205 . + . ID=Phyra75289.4;Parent=Phyra75289;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_12 . CDS 135273 135393 . + 0 ID=Phyra75289;Parent=Phyra75289;rank=5 scaffold_12 . exon 135273 135393 . + . ID=Phyra75289.5;Parent=Phyra75289;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_12 . CDS 135461 135794 . + 0 ID=Phyra75289;Parent=Phyra75289;rank=6 scaffold_12 . exon 135461 135794 . + . ID=Phyra75289.6;Parent=Phyra75289;constitutive=1;ensembl_phase=2;rank=6 scaffold_12 . CDS 136070 136147 . + 0 ID=Phyra75289;Parent=Phyra75289;rank=7 scaffold_12 . exon 136070 136147 . + . ID=Phyra75289.7;Parent=Phyra75289;constitutive=1;rank=7 scaffold_12 . CDS 136237 136359 . + 0 ID=Phyra75289;Parent=Phyra75289;rank=8 scaffold_12 . exon 136237 136359 . + . ID=Phyra75289.8;Parent=Phyra75289;constitutive=1;rank=8 scaffold_12 ensembl protein_coding_gene 136549 137454 . - . ID=Phyra75290;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000037;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 136549 137454 . - . ID=Phyra75290;Parent=Phyra75290;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 136549 137454 . - 0 ID=Phyra75290;Parent=Phyra75290;rank=1 scaffold_12 . exon 136549 137454 . - . ID=Phyra75290.1;Parent=Phyra75290;constitutive=1;rank=1 scaffold_12 . repeat_region 142487 142542 . ? . description=trf scaffold_12 . repeat_region 143420 143445 . ? . description=trf scaffold_12 . repeat_region 143671 143727 . ? . description=trf scaffold_12 ensembl protein_coding_gene 140501 143533 . + . ID=Phyra75291;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000038;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 140501 143533 . + . ID=Phyra75291;Parent=Phyra75291;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 140501 143533 . + 0 ID=Phyra75291;Parent=Phyra75291;rank=1 scaffold_12 . exon 140501 143533 . + . ID=Phyra75291.1;Parent=Phyra75291;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 148503 150773 . - . ID=Phyra75292;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000039;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 148503 150773 . - . ID=Phyra75292;Parent=Phyra75292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 148503 150773 . - 0 ID=Phyra75292;Parent=Phyra75292;rank=1 scaffold_12 . exon 148503 150773 . - . ID=Phyra75292.1;Parent=Phyra75292;constitutive=1;rank=1 scaffold_12 . biological_region 157719 157719 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 151811 153431 . + . ID=Phyra75293;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000040;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 151811 153431 . + . ID=Phyra75293;Parent=Phyra75293;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 151811 151981 . + 0 ID=Phyra75293;Parent=Phyra75293;rank=1 scaffold_12 . exon 151811 151981 . + . ID=Phyra75293.1;Parent=Phyra75293;constitutive=1;rank=1 scaffold_12 . CDS 152355 152521 . + 0 ID=Phyra75293;Parent=Phyra75293;rank=2 scaffold_12 . exon 152355 152521 . + . ID=Phyra75293.2;Parent=Phyra75293;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_12 . CDS 152607 152698 . + 0 ID=Phyra75293;Parent=Phyra75293;rank=3 scaffold_12 . exon 152607 152698 . + . ID=Phyra75293.3;Parent=Phyra75293;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 152789 152878 . + 0 ID=Phyra75293;Parent=Phyra75293;rank=4 scaffold_12 . exon 152789 152878 . + . ID=Phyra75293.4;Parent=Phyra75293;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 152909 153340 . + 0 ID=Phyra75293;Parent=Phyra75293;rank=5 scaffold_12 . exon 152909 153340 . + . ID=Phyra75293.5;Parent=Phyra75293;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_12 . CDS 153427 153431 . + 0 ID=Phyra75293;Parent=Phyra75293;rank=6 scaffold_12 . exon 153427 153431 . + . ID=Phyra75293.6;Parent=Phyra75293;constitutive=1;ensembl_phase=1;rank=6 scaffold_12 ensembl protein_coding_gene 158067 158861 . - . ID=Phyra75294;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000041;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 158067 158861 . - . ID=Phyra75294;Parent=Phyra75294;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 158067 158861 . - 0 ID=Phyra75294;Parent=Phyra75294;rank=1 scaffold_12 . exon 158067 158861 . - . ID=Phyra75294.1;Parent=Phyra75294;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 156621 158014 . + . ID=Phyra94096;biotype=protein_coding;external_name=C_scaffold_12000010;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 156621 158014 . + . ID=Phyra94096;Parent=Phyra94096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 156621 156776 . + 0 ID=Phyra94096;Parent=Phyra94096;rank=1 scaffold_12 . exon 156621 156776 . + . ID=Phyra94096.1;Parent=Phyra94096;constitutive=1;rank=1 scaffold_12 . CDS 156945 157031 . + 0 ID=Phyra94096;Parent=Phyra94096;rank=2 scaffold_12 . exon 156945 157031 . + . ID=Phyra94096.2;Parent=Phyra94096;constitutive=1;rank=2 scaffold_12 . CDS 157200 157354 . + 0 ID=Phyra94096;Parent=Phyra94096;rank=3 scaffold_12 . exon 157200 157354 . + . ID=Phyra94096.3;Parent=Phyra94096;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_12 . CDS 157441 157677 . + 0 ID=Phyra94096;Parent=Phyra94096;rank=4 scaffold_12 . exon 157441 157677 . + . ID=Phyra94096.4;Parent=Phyra94096;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_12 . CDS 157719 157720 . + 0 ID=Phyra94096;Parent=Phyra94096;rank=5 scaffold_12 . exon 157719 157720 . + . ID=Phyra94096.5;Parent=Phyra94096;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_12 . CDS 157833 158014 . + 0 ID=Phyra94096;Parent=Phyra94096;rank=6 scaffold_12 . exon 157833 158014 . + . ID=Phyra94096.6;Parent=Phyra94096;constitutive=1;ensembl_phase=1;rank=6 scaffold_12 . repeat_region 166038 166101 . ? . description=dust scaffold_12 ensembl protein_coding_gene 169137 170549 . + . ID=Phyra40534;biotype=protein_coding;external_name=gwEuk.12.163.1;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 169137 170549 . + . ID=Phyra40534;Parent=Phyra40534;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 169137 169526 . + 0 ID=Phyra40534;Parent=Phyra40534;rank=1 scaffold_12 . exon 169137 169526 . + . ID=Phyra40534.1;Parent=Phyra40534;constitutive=1;rank=1 scaffold_12 . CDS 169594 170207 . + 0 ID=Phyra40534;Parent=Phyra40534;rank=2 scaffold_12 . exon 169594 170207 . + . ID=Phyra40534.2;Parent=Phyra40534;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_12 . CDS 170283 170378 . + 0 ID=Phyra40534;Parent=Phyra40534;rank=3 scaffold_12 . CDS 170444 170549 . + 0 ID=Phyra40534;Parent=Phyra40534;rank=4 scaffold_12 ensembl protein_coding_gene 163749 166124 . - . ID=Phyra75296;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000043;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 163749 166124 . - . ID=Phyra75296;Parent=Phyra75296;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 163749 163845 . - 0 ID=Phyra75296;Parent=Phyra75296;rank=2 scaffold_12 . exon 163749 163845 . - . ID=Phyra75296.2;Parent=Phyra75296;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 163963 166124 . - 0 ID=Phyra75296;Parent=Phyra75296;rank=1 scaffold_12 . exon 163963 166124 . - . ID=Phyra75296.1;Parent=Phyra75296;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 166748 168957 . - . ID=Phyra75297;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000044;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 166748 168957 . - . ID=Phyra75297;Parent=Phyra75297;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 166748 166900 . - 0 ID=Phyra75297;Parent=Phyra75297;rank=8 scaffold_12 . exon 166748 166900 . - . ID=Phyra75297.8;Parent=Phyra75297;constitutive=1;rank=8 scaffold_12 . CDS 166975 167305 . - 0 ID=Phyra75297;Parent=Phyra75297;rank=7 scaffold_12 . exon 166975 167305 . - . ID=Phyra75297.7;Parent=Phyra75297;constitutive=1;ensembl_phase=2;rank=7 scaffold_12 . CDS 167438 167685 . - 0 ID=Phyra75297;Parent=Phyra75297;rank=6 scaffold_12 . exon 167438 167685 . - . ID=Phyra75297.6;Parent=Phyra75297;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_12 . CDS 167777 167844 . - 0 ID=Phyra75297;Parent=Phyra75297;rank=5 scaffold_12 . exon 167777 167844 . - . ID=Phyra75297.5;Parent=Phyra75297;constitutive=1;ensembl_phase=1;rank=5 scaffold_12 . CDS 167922 168007 . - 0 ID=Phyra75297;Parent=Phyra75297;rank=4 scaffold_12 . exon 167922 168007 . - . ID=Phyra75297.4;Parent=Phyra75297;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_12 . CDS 168080 168313 . - 0 ID=Phyra75297;Parent=Phyra75297;rank=3 scaffold_12 . exon 168080 168313 . - . ID=Phyra75297.3;Parent=Phyra75297;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_12 . CDS 168375 168540 . - 0 ID=Phyra75297;Parent=Phyra75297;rank=2 scaffold_12 . exon 168375 168540 . - . ID=Phyra75297.2;Parent=Phyra75297;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 168609 168957 . - 0 ID=Phyra75297;Parent=Phyra75297;rank=1 scaffold_12 . exon 168609 168957 . - . ID=Phyra75297.1;Parent=Phyra75297;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 159921 162268 . + . ID=Phyra94100;biotype=protein_coding;external_name=C_scaffold_12000014;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 159921 162268 . + . ID=Phyra94100;Parent=Phyra94100;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 159921 160319 . + 0 ID=Phyra94100;Parent=Phyra94100;rank=1 scaffold_12 . exon 159921 160319 . + . ID=Phyra94100.1;Parent=Phyra94100;constitutive=1;rank=1 scaffold_12 . CDS 160413 160913 . + 0 ID=Phyra94100;Parent=Phyra94100;rank=2 scaffold_12 . exon 160413 160913 . + . ID=Phyra94100.2;Parent=Phyra94100;constitutive=1;rank=2 scaffold_12 . CDS 161268 161502 . + 0 ID=Phyra94100;Parent=Phyra94100;rank=3 scaffold_12 . exon 161268 161502 . + . ID=Phyra94100.3;Parent=Phyra94100;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_12 . CDS 161536 162012 . + 0 ID=Phyra94100;Parent=Phyra94100;rank=4 scaffold_12 . exon 161536 162012 . + . ID=Phyra94100.4;Parent=Phyra94100;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 162090 162268 . + 0 ID=Phyra94100;Parent=Phyra94100;rank=5 scaffold_12 . exon 162090 162268 . + . ID=Phyra94100.5;Parent=Phyra94100;constitutive=1;ensembl_phase=1;rank=5 scaffold_12 . biological_region 173169 173174 0.999 - . logic_name=eponine scaffold_12 . biological_region 177796 177800 0.999 + . logic_name=eponine scaffold_12 . biological_region 177819 177823 0.999 + . logic_name=eponine scaffold_12 . exon 170283 170378 . + . ID=Phyra40534.3;Parent=Phyra40534;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_12 . exon 170444 170549 . + . ID=Phyra40534.4;Parent=Phyra40534;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 ensembl protein_coding_gene 178034 179462 . + . ID=Phyra75299;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000046;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 178034 179462 . + . ID=Phyra75299;Parent=Phyra75299;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 178034 178229 . + 0 ID=Phyra75299;Parent=Phyra75299;rank=1 scaffold_12 . exon 178034 178229 . + . ID=Phyra75299.1;Parent=Phyra75299;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 178293 178362 . + 0 ID=Phyra75299;Parent=Phyra75299;rank=2 scaffold_12 . exon 178293 178362 . + . ID=Phyra75299.2;Parent=Phyra75299;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 178428 178613 . + 0 ID=Phyra75299;Parent=Phyra75299;rank=3 scaffold_12 . exon 178428 178613 . + . ID=Phyra75299.3;Parent=Phyra75299;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_12 . CDS 178684 179038 . + 0 ID=Phyra75299;Parent=Phyra75299;rank=4 scaffold_12 . exon 178684 179038 . + . ID=Phyra75299.4;Parent=Phyra75299;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 . CDS 179211 179462 . + 0 ID=Phyra75299;Parent=Phyra75299;rank=5 scaffold_12 . exon 179211 179462 . + . ID=Phyra75299.5;Parent=Phyra75299;constitutive=1;rank=5 scaffold_12 . repeat_region 185576 185612 . ? . description=trf scaffold_12 . repeat_region 185596 185633 . ? . description=trf scaffold_12 . repeat_region 186404 186420 . ? . description=dust scaffold_12 ensembl protein_coding_gene 183982 184170 . + . ID=Phyra40538;biotype=protein_coding;external_name=gwEuk.12.167.1;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 183982 184170 . + . ID=Phyra40538;Parent=Phyra40538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 183982 184170 . + 0 ID=Phyra40538;Parent=Phyra40538;rank=1 scaffold_12 . exon 183982 184170 . + . ID=Phyra40538.1;Parent=Phyra40538;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 187000 189216 . + . ID=Phyra40543;biotype=protein_coding;external_name=gwEuk.12.172.1;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 187000 189216 . + . ID=Phyra40543;Parent=Phyra40543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 187000 188952 . + 0 ID=Phyra40543;Parent=Phyra40543;rank=1 scaffold_12 . exon 187000 188952 . + . ID=Phyra40543.1;Parent=Phyra40543;constitutive=1;rank=1 scaffold_12 . CDS 189061 189216 . + 0 ID=Phyra40543;Parent=Phyra40543;rank=2 scaffold_12 . exon 189061 189216 . + . ID=Phyra40543.2;Parent=Phyra40543;constitutive=1;rank=2 scaffold_12 ensembl protein_coding_gene 182292 183578 . - . ID=Phyra75300;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000047;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 182292 183578 . - . ID=Phyra75300;Parent=Phyra75300;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 182292 183578 . - 0 ID=Phyra75300;Parent=Phyra75300;rank=1 scaffold_12 . exon 182292 183578 . - . ID=Phyra75300.1;Parent=Phyra75300;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 184967 186376 . - . ID=Phyra75301;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000048;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 184967 186376 . - . ID=Phyra75301;Parent=Phyra75301;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 184967 185240 . - 0 ID=Phyra75301;Parent=Phyra75301;rank=5 scaffold_12 . exon 184967 185240 . - . ID=Phyra75301.5;Parent=Phyra75301;constitutive=1;ensembl_phase=2;rank=5 scaffold_12 . CDS 185318 185456 . - 0 ID=Phyra75301;Parent=Phyra75301;rank=4 scaffold_12 . exon 185318 185456 . - . ID=Phyra75301.4;Parent=Phyra75301;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_12 . CDS 185525 185667 . - 0 ID=Phyra75301;Parent=Phyra75301;rank=3 scaffold_12 . exon 185525 185667 . - . ID=Phyra75301.3;Parent=Phyra75301;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 185732 185802 . - 0 ID=Phyra75301;Parent=Phyra75301;rank=2 scaffold_12 . exon 185732 185802 . - . ID=Phyra75301.2;Parent=Phyra75301;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_12 . CDS 186245 186376 . - 0 ID=Phyra75301;Parent=Phyra75301;rank=1 scaffold_12 . exon 186245 186376 . - . ID=Phyra75301.1;Parent=Phyra75301;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 189603 190061 . + . ID=Phyra75303;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000050;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 189603 190061 . + . ID=Phyra75303;Parent=Phyra75303;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 189603 189676 . + 0 ID=Phyra75303;Parent=Phyra75303;rank=1 scaffold_12 . exon 189603 189676 . + . ID=Phyra75303.1;Parent=Phyra75303;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 189752 189855 . + 0 ID=Phyra75303;Parent=Phyra75303;rank=2 scaffold_12 . exon 189752 189855 . + . ID=Phyra75303.2;Parent=Phyra75303;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 189889 190061 . + 0 ID=Phyra75303;Parent=Phyra75303;rank=3 scaffold_12 . biological_region 191015 191017 0.999 - . logic_name=eponine scaffold_12 . biological_region 194474 194478 0.999 - . logic_name=eponine scaffold_12 . biological_region 195217 195220 0.999 + . logic_name=eponine scaffold_12 . biological_region 195454 195456 0.999 - . logic_name=eponine scaffold_12 . biological_region 195512 195517 0.999 + . logic_name=eponine scaffold_12 . biological_region 195531 195539 0.999 - . logic_name=eponine scaffold_12 . biological_region 195561 195567 0.999 + . logic_name=eponine scaffold_12 . biological_region 199259 199263 0.999 + . logic_name=eponine scaffold_12 . exon 189889 190061 . + . ID=Phyra75303.3;Parent=Phyra75303;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 ensembl protein_coding_gene 190148 194969 . - . ID=Phyra75304;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000051;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 190148 194969 . - . ID=Phyra75304;Parent=Phyra75304;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 190148 194545 . - 0 ID=Phyra75304;Parent=Phyra75304;rank=3 scaffold_12 . exon 190148 194545 . - . ID=Phyra75304.3;Parent=Phyra75304;constitutive=1;rank=3 scaffold_12 . CDS 194611 194778 . - 0 ID=Phyra75304;Parent=Phyra75304;rank=2 scaffold_12 . exon 194611 194778 . - . ID=Phyra75304.2;Parent=Phyra75304;constitutive=1;rank=2 scaffold_12 . CDS 194844 194969 . - 0 ID=Phyra75304;Parent=Phyra75304;rank=1 scaffold_12 . exon 194844 194969 . - . ID=Phyra75304.1;Parent=Phyra75304;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 195138 196032 . + . ID=Phyra75305;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000052;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 195138 196032 . + . ID=Phyra75305;Parent=Phyra75305;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 195138 195731 . + 0 ID=Phyra75305;Parent=Phyra75305;rank=1 scaffold_12 . exon 195138 195731 . + . ID=Phyra75305.1;Parent=Phyra75305;constitutive=1;rank=1 scaffold_12 . CDS 195799 196032 . + 0 ID=Phyra75305;Parent=Phyra75305;rank=2 scaffold_12 . exon 195799 196032 . + . ID=Phyra75305.2;Parent=Phyra75305;constitutive=1;rank=2 scaffold_12 ensembl protein_coding_gene 197316 199484 . + . ID=Phyra75306;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000053;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 197316 199484 . + . ID=Phyra75306;Parent=Phyra75306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 197316 199484 . + 0 ID=Phyra75306;Parent=Phyra75306;rank=1 scaffold_12 . exon 197316 199484 . + . ID=Phyra75306.1;Parent=Phyra75306;constitutive=1;rank=1 scaffold_12 . repeat_region 200152 200250 . ? . description=trf scaffold_12 . repeat_region 200183 200267 . ? . description=trf scaffold_12 . repeat_region 204396 204405 . ? . description=dust scaffold_12 ensembl protein_coding_gene 200133 200547 . - . ID=Phyra75307;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000054;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 200133 200547 . - . ID=Phyra75307;Parent=Phyra75307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 200133 200411 . - 0 ID=Phyra75307;Parent=Phyra75307;rank=2 scaffold_12 . exon 200133 200411 . - . ID=Phyra75307.2;Parent=Phyra75307;constitutive=1;rank=2 scaffold_12 . CDS 200479 200547 . - 0 ID=Phyra75307;Parent=Phyra75307;rank=1 scaffold_12 . exon 200479 200547 . - . ID=Phyra75307.1;Parent=Phyra75307;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 200836 202290 . + . ID=Phyra75308;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000055;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 200836 202290 . + . ID=Phyra75308;Parent=Phyra75308;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 200836 201201 . + 0 ID=Phyra75308;Parent=Phyra75308;rank=1 scaffold_12 . exon 200836 201201 . + . ID=Phyra75308.1;Parent=Phyra75308;constitutive=1;rank=1 scaffold_12 . CDS 201277 202290 . + 0 ID=Phyra75308;Parent=Phyra75308;rank=2 scaffold_12 . exon 201277 202290 . + . ID=Phyra75308.2;Parent=Phyra75308;constitutive=1;rank=2 scaffold_12 ensembl protein_coding_gene 205321 207860 . + . ID=Phyra75310;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000057;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 205321 207860 . + . ID=Phyra75310;Parent=Phyra75310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 205321 205724 . + 0 ID=Phyra75310;Parent=Phyra75310;rank=1 scaffold_12 . exon 205321 205724 . + . ID=Phyra75310.1;Parent=Phyra75310;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 205806 205898 . + 0 ID=Phyra75310;Parent=Phyra75310;rank=2 scaffold_12 . exon 205806 205898 . + . ID=Phyra75310.2;Parent=Phyra75310;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_12 . CDS 205976 206041 . + 0 ID=Phyra75310;Parent=Phyra75310;rank=3 scaffold_12 . exon 205976 206041 . + . ID=Phyra75310.3;Parent=Phyra75310;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_12 . CDS 206255 207860 . + 0 ID=Phyra75310;Parent=Phyra75310;rank=4 scaffold_12 . exon 206255 207860 . + . ID=Phyra75310.4;Parent=Phyra75310;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 ensembl protein_coding_gene 202417 204165 . - . ID=Phyra94104;biotype=protein_coding;external_name=C_scaffold_12000018;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 202417 204165 . - . ID=Phyra94104;Parent=Phyra94104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 202417 202447 . - 0 ID=Phyra94104;Parent=Phyra94104;rank=6 scaffold_12 . exon 202417 202447 . - . ID=Phyra94104.6;Parent=Phyra94104;constitutive=1;ensembl_phase=2;rank=6 scaffold_12 . CDS 202480 202866 . - 0 ID=Phyra94104;Parent=Phyra94104;rank=5 scaffold_12 . exon 202480 202866 . - . ID=Phyra94104.5;Parent=Phyra94104;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_12 . CDS 202942 203057 . - 0 ID=Phyra94104;Parent=Phyra94104;rank=4 scaffold_12 . exon 202942 203057 . - . ID=Phyra94104.4;Parent=Phyra94104;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_12 . CDS 203122 203369 . - 0 ID=Phyra94104;Parent=Phyra94104;rank=3 scaffold_12 . exon 203122 203369 . - . ID=Phyra94104.3;Parent=Phyra94104;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 203739 204038 . - 0 ID=Phyra94104;Parent=Phyra94104;rank=2 scaffold_12 . exon 203739 204038 . - . ID=Phyra94104.2;Parent=Phyra94104;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 204111 204165 . - 0 ID=Phyra94104;Parent=Phyra94104;rank=1 scaffold_12 . exon 204111 204165 . - . ID=Phyra94104.1;Parent=Phyra94104;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . biological_region 214371 214375 0.999 - . logic_name=eponine scaffold_12 . biological_region 214548 214551 0.999 - . logic_name=eponine scaffold_12 . biological_region 215054 215055 0.999 + . logic_name=eponine scaffold_12 . biological_region 218640 218642 0.999 - . logic_name=eponine scaffold_12 . biological_region 218730 218734 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 211977 214386 . - . ID=Phyra75312;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000059;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 211977 214386 . - . ID=Phyra75312;Parent=Phyra75312;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 211977 213390 . - 0 ID=Phyra75312;Parent=Phyra75312;rank=5 scaffold_12 . exon 211977 213390 . - . ID=Phyra75312.5;Parent=Phyra75312;constitutive=1;ensembl_phase=2;rank=5 scaffold_12 . CDS 213466 213534 . - 0 ID=Phyra75312;Parent=Phyra75312;rank=4 scaffold_12 . exon 213466 213534 . - . ID=Phyra75312.4;Parent=Phyra75312;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_12 . CDS 213607 213681 . - 0 ID=Phyra75312;Parent=Phyra75312;rank=3 scaffold_12 . exon 213607 213681 . - . ID=Phyra75312.3;Parent=Phyra75312;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_12 . CDS 213745 213813 . - 0 ID=Phyra75312;Parent=Phyra75312;rank=2 scaffold_12 . exon 213745 213813 . - . ID=Phyra75312.2;Parent=Phyra75312;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_12 . CDS 213881 214386 . - 0 ID=Phyra75312;Parent=Phyra75312;rank=1 scaffold_12 . exon 213881 214386 . - . ID=Phyra75312.1;Parent=Phyra75312;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 219099 221268 . - . ID=Phyra75314;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000061;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 219099 221268 . - . ID=Phyra75314;Parent=Phyra75314;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 219099 220387 . - 0 ID=Phyra75314;Parent=Phyra75314;rank=4 scaffold_12 . exon 219099 220387 . - . ID=Phyra75314.4;Parent=Phyra75314;constitutive=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 220467 220979 . - 0 ID=Phyra75314;Parent=Phyra75314;rank=3 scaffold_12 . CDS 221052 221173 . - 0 ID=Phyra75314;Parent=Phyra75314;rank=2 scaffold_12 . CDS 221237 221268 . - 0 ID=Phyra75314;Parent=Phyra75314;rank=1 scaffold_12 ensembl protein_coding_gene 209944 210808 . + . ID=Phyra94107;biotype=protein_coding;external_name=C_scaffold_12000021;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 209944 210808 . + . ID=Phyra94107;Parent=Phyra94107;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 209944 210196 . + 0 ID=Phyra94107;Parent=Phyra94107;rank=1 scaffold_12 . exon 209944 210196 . + . ID=Phyra94107.1;Parent=Phyra94107;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 210288 210460 . + 0 ID=Phyra94107;Parent=Phyra94107;rank=2 scaffold_12 . exon 210288 210460 . + . ID=Phyra94107.2;Parent=Phyra94107;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 210535 210604 . + 0 ID=Phyra94107;Parent=Phyra94107;rank=3 scaffold_12 . exon 210535 210604 . + . ID=Phyra94107.3;Parent=Phyra94107;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_12 . CDS 210676 210753 . + 0 ID=Phyra94107;Parent=Phyra94107;rank=4 scaffold_12 . exon 210676 210753 . + . ID=Phyra94107.4;Parent=Phyra94107;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 210789 210808 . + 0 ID=Phyra94107;Parent=Phyra94107;rank=5 scaffold_12 . exon 210789 210808 . + . ID=Phyra94107.5;Parent=Phyra94107;constitutive=1;ensembl_phase=1;rank=5 scaffold_12 ensembl protein_coding_gene 215031 218108 . - . ID=Phyra94109;biotype=protein_coding;external_name=C_scaffold_12000023;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 215031 218108 . - . ID=Phyra94109;Parent=Phyra94109;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 215031 215200 . - 0 ID=Phyra94109;Parent=Phyra94109;rank=9 scaffold_12 . exon 215031 215200 . - . ID=Phyra94109.9;Parent=Phyra94109;constitutive=1;ensembl_phase=1;rank=9 scaffold_12 . CDS 215270 215833 . - 0 ID=Phyra94109;Parent=Phyra94109;rank=8 scaffold_12 . exon 215270 215833 . - . ID=Phyra94109.8;Parent=Phyra94109;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_12 . CDS 216095 216197 . - 0 ID=Phyra94109;Parent=Phyra94109;rank=7 scaffold_12 . exon 216095 216197 . - . ID=Phyra94109.7;Parent=Phyra94109;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_12 . CDS 216288 216761 . - 0 ID=Phyra94109;Parent=Phyra94109;rank=6 scaffold_12 . exon 216288 216761 . - . ID=Phyra94109.6;Parent=Phyra94109;constitutive=1;rank=6 scaffold_12 . CDS 216840 217055 . - 0 ID=Phyra94109;Parent=Phyra94109;rank=5 scaffold_12 . exon 216840 217055 . - . ID=Phyra94109.5;Parent=Phyra94109;constitutive=1;rank=5 scaffold_12 . CDS 217167 217526 . - 0 ID=Phyra94109;Parent=Phyra94109;rank=4 scaffold_12 . exon 217167 217526 . - . ID=Phyra94109.4;Parent=Phyra94109;constitutive=1;rank=4 scaffold_12 . CDS 217689 217691 . - 0 ID=Phyra94109;Parent=Phyra94109;rank=3 scaffold_12 . exon 217689 217691 . - . ID=Phyra94109.3;Parent=Phyra94109;constitutive=1;rank=3 scaffold_12 . CDS 217869 218003 . - 0 ID=Phyra94109;Parent=Phyra94109;rank=2 scaffold_12 . exon 217869 218003 . - . ID=Phyra94109.2;Parent=Phyra94109;constitutive=1;rank=2 scaffold_12 . CDS 218067 218108 . - 0 ID=Phyra94109;Parent=Phyra94109;rank=1 scaffold_12 . exon 218067 218108 . - . ID=Phyra94109.1;Parent=Phyra94109;constitutive=1;rank=1 scaffold_12 . repeat_region 220236 220277 . ? . description=dust scaffold_12 . repeat_region 222565 222572 . ? . description=dust scaffold_12 . repeat_region 223843 223854 . ? . description=dust scaffold_12 . repeat_region 223873 223910 . ? . description=dust scaffold_12 . exon 220467 220979 . - . ID=Phyra75314.3;Parent=Phyra75314;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_12 . exon 221052 221173 . - . ID=Phyra75314.2;Parent=Phyra75314;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_12 . exon 221237 221268 . - . ID=Phyra75314.1;Parent=Phyra75314;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 221635 223799 . + . ID=Phyra75315;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000062;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 221635 223799 . + . ID=Phyra75315;Parent=Phyra75315;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 221635 222539 . + 0 ID=Phyra75315;Parent=Phyra75315;rank=1 scaffold_12 . exon 221635 222539 . + . ID=Phyra75315.1;Parent=Phyra75315;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 222617 223799 . + 0 ID=Phyra75315;Parent=Phyra75315;rank=2 scaffold_12 . exon 222617 223799 . + . ID=Phyra75315.2;Parent=Phyra75315;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 ensembl protein_coding_gene 229564 230624 . - . ID=Phyra75316;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000063;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 229564 230624 . - . ID=Phyra75316;Parent=Phyra75316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 229564 229624 . - 0 ID=Phyra75316;Parent=Phyra75316;rank=3 scaffold_12 . exon 229564 229624 . - . ID=Phyra75316.3;Parent=Phyra75316;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 229654 230254 . - 0 ID=Phyra75316;Parent=Phyra75316;rank=2 scaffold_12 . exon 229654 230254 . - . ID=Phyra75316.2;Parent=Phyra75316;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 230360 230624 . - 0 ID=Phyra75316;Parent=Phyra75316;rank=1 scaffold_12 . biological_region 230033 230034 0.999 + . logic_name=eponine scaffold_12 . biological_region 230447 230454 0.999 + . logic_name=eponine scaffold_12 . biological_region 230463 230467 0.999 - . logic_name=eponine scaffold_12 . biological_region 230465 230473 0.999 + . logic_name=eponine scaffold_12 . biological_region 230484 230486 0.999 - . logic_name=eponine scaffold_12 . biological_region 230502 230502 0.999 - . logic_name=eponine scaffold_12 . biological_region 230505 230506 0.999 + . logic_name=eponine scaffold_12 . biological_region 230513 230518 0.999 - . logic_name=eponine scaffold_12 . biological_region 230520 230522 0.999 + . logic_name=eponine scaffold_12 . biological_region 230532 230536 0.999 - . logic_name=eponine scaffold_12 . biological_region 230538 230540 0.999 + . logic_name=eponine scaffold_12 . biological_region 230550 230556 0.999 - . logic_name=eponine scaffold_12 . biological_region 235250 235252 0.999 + . logic_name=eponine scaffold_12 . biological_region 235315 235319 0.999 - . logic_name=eponine scaffold_12 . biological_region 235385 235387 0.999 - . logic_name=eponine scaffold_12 . biological_region 235437 235438 0.999 - . logic_name=eponine scaffold_12 . biological_region 236045 236051 0.999 - . logic_name=eponine scaffold_12 . repeat_region 236074 236113 . ? . description=trf scaffold_12 . biological_region 237499 237505 0.999 - . logic_name=eponine scaffold_12 . biological_region 239239 239241 0.999 + . logic_name=eponine scaffold_12 . biological_region 239338 239340 0.999 + . logic_name=eponine scaffold_12 . biological_region 239382 239384 0.999 + . logic_name=eponine scaffold_12 . biological_region 239450 239454 0.999 - . logic_name=eponine scaffold_12 . biological_region 239472 239476 0.999 - . logic_name=eponine scaffold_12 . biological_region 239517 239520 0.999 - . logic_name=eponine scaffold_12 . biological_region 239552 239555 0.999 + . logic_name=eponine scaffold_12 . biological_region 239573 239575 0.999 + . logic_name=eponine scaffold_12 . exon 230360 230624 . - . ID=Phyra75316.1;Parent=Phyra75316;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 235226 236191 . + . ID=Phyra75318;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000065;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 235226 236191 . + . ID=Phyra75318;Parent=Phyra75318;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 235226 236191 . + 0 ID=Phyra75318;Parent=Phyra75318;rank=1 scaffold_12 . exon 235226 236191 . + . ID=Phyra75318.1;Parent=Phyra75318;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 236666 237526 . - . ID=Phyra75319;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000066;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 236666 237526 . - . ID=Phyra75319;Parent=Phyra75319;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 236666 237526 . - 0 ID=Phyra75319;Parent=Phyra75319;rank=1 scaffold_12 . exon 236666 237526 . - . ID=Phyra75319.1;Parent=Phyra75319;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 238219 240552 . + . ID=Phyra75320;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000067;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 238219 240552 . + . ID=Phyra75320;Parent=Phyra75320;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 238219 238409 . + 0 ID=Phyra75320;Parent=Phyra75320;rank=1 scaffold_12 . exon 238219 238409 . + . ID=Phyra75320.1;Parent=Phyra75320;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 238495 238605 . + 0 ID=Phyra75320;Parent=Phyra75320;rank=2 scaffold_12 . exon 238495 238605 . + . ID=Phyra75320.2;Parent=Phyra75320;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_12 . CDS 238675 238903 . + 0 ID=Phyra75320;Parent=Phyra75320;rank=3 scaffold_12 . exon 238675 238903 . + . ID=Phyra75320.3;Parent=Phyra75320;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 238968 239053 . + 0 ID=Phyra75320;Parent=Phyra75320;rank=4 scaffold_12 . exon 238968 239053 . + . ID=Phyra75320.4;Parent=Phyra75320;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_12 . CDS 239252 240192 . + 0 ID=Phyra75320;Parent=Phyra75320;rank=5 scaffold_12 . exon 239252 240192 . + . ID=Phyra75320.5;Parent=Phyra75320;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_12 . CDS 240264 240387 . + 0 ID=Phyra75320;Parent=Phyra75320;rank=6 scaffold_12 . CDS 240459 240552 . + 0 ID=Phyra75320;Parent=Phyra75320;rank=7 scaffold_12 ensembl protein_coding_gene 230828 234008 . + . ID=Phyra94111;biotype=protein_coding;external_name=C_scaffold_12000025;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 230828 234008 . + . ID=Phyra94111;Parent=Phyra94111;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 230828 230860 . + 0 ID=Phyra94111;Parent=Phyra94111;rank=1 scaffold_12 . exon 230828 230860 . + . ID=Phyra94111.1;Parent=Phyra94111;constitutive=1;rank=1 scaffold_12 . CDS 230933 231127 . + 0 ID=Phyra94111;Parent=Phyra94111;rank=2 scaffold_12 . exon 230933 231127 . + . ID=Phyra94111.2;Parent=Phyra94111;constitutive=1;rank=2 scaffold_12 . CDS 231203 231436 . + 0 ID=Phyra94111;Parent=Phyra94111;rank=3 scaffold_12 . exon 231203 231436 . + . ID=Phyra94111.3;Parent=Phyra94111;constitutive=1;rank=3 scaffold_12 . CDS 231530 231953 . + 0 ID=Phyra94111;Parent=Phyra94111;rank=4 scaffold_12 . exon 231530 231953 . + . ID=Phyra94111.4;Parent=Phyra94111;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_12 . CDS 232030 232134 . + 0 ID=Phyra94111;Parent=Phyra94111;rank=5 scaffold_12 . exon 232030 232134 . + . ID=Phyra94111.5;Parent=Phyra94111;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_12 . CDS 232204 232812 . + 0 ID=Phyra94111;Parent=Phyra94111;rank=6 scaffold_12 . exon 232204 232812 . + . ID=Phyra94111.6;Parent=Phyra94111;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_12 . CDS 232834 234008 . + 0 ID=Phyra94111;Parent=Phyra94111;rank=7 scaffold_12 . exon 232834 234008 . + . ID=Phyra94111.7;Parent=Phyra94111;constitutive=1;ensembl_phase=1;rank=7 scaffold_12 . exon 240264 240387 . + . ID=Phyra75320.6;Parent=Phyra75320;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_12 . exon 240459 240552 . + . ID=Phyra75320.7;Parent=Phyra75320;constitutive=1;ensembl_phase=2;rank=7 scaffold_12 ensembl protein_coding_gene 245547 247834 . - . ID=Phyra75321;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000068;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 245547 247834 . - . ID=Phyra75321;Parent=Phyra75321;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 245547 245569 . - 0 ID=Phyra75321;Parent=Phyra75321;rank=2 scaffold_12 . exon 245547 245569 . - . ID=Phyra75321.2;Parent=Phyra75321;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 245647 247834 . - 0 ID=Phyra75321;Parent=Phyra75321;rank=1 scaffold_12 . exon 245647 247834 . - . ID=Phyra75321.1;Parent=Phyra75321;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 247963 250255 . + . ID=Phyra75322;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000069;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 247963 250255 . + . ID=Phyra75322;Parent=Phyra75322;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 247963 248104 . + 0 ID=Phyra75322;Parent=Phyra75322;rank=1 scaffold_12 . exon 247963 248104 . + . ID=Phyra75322.1;Parent=Phyra75322;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 248166 248233 . + 0 ID=Phyra75322;Parent=Phyra75322;rank=2 scaffold_12 . exon 248166 248233 . + . ID=Phyra75322.2;Parent=Phyra75322;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 248314 248439 . + 0 ID=Phyra75322;Parent=Phyra75322;rank=3 scaffold_12 . exon 248314 248439 . + . ID=Phyra75322.3;Parent=Phyra75322;constitutive=1;rank=3 scaffold_12 . CDS 248512 248558 . + 0 ID=Phyra75322;Parent=Phyra75322;rank=4 scaffold_12 . exon 248512 248558 . + . ID=Phyra75322.4;Parent=Phyra75322;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_12 . CDS 248771 249061 . + 0 ID=Phyra75322;Parent=Phyra75322;rank=5 scaffold_12 . exon 248771 249061 . + . ID=Phyra75322.5;Parent=Phyra75322;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_12 . CDS 249345 249401 . + 0 ID=Phyra75322;Parent=Phyra75322;rank=6 scaffold_12 . exon 249345 249401 . + . ID=Phyra75322.6;Parent=Phyra75322;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_12 . CDS 249516 249593 . + 0 ID=Phyra75322;Parent=Phyra75322;rank=7 scaffold_12 . exon 249516 249593 . + . ID=Phyra75322.7;Parent=Phyra75322;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_12 . CDS 249665 249789 . + 0 ID=Phyra75322;Parent=Phyra75322;rank=8 scaffold_12 . exon 249665 249789 . + . ID=Phyra75322.8;Parent=Phyra75322;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_12 . CDS 249905 249973 . + 0 ID=Phyra75322;Parent=Phyra75322;rank=9 scaffold_12 . CDS 250044 250255 . + 0 ID=Phyra75322;Parent=Phyra75322;rank=10 scaffold_12 . biological_region 249922 249928 0.999 + . logic_name=eponine scaffold_12 . repeat_region 249929 249967 . ? . description=dust scaffold_12 . biological_region 249940 249941 0.999 + . logic_name=eponine scaffold_12 . biological_region 249944 249948 0.999 + . logic_name=eponine scaffold_12 . biological_region 249967 249973 0.999 + . logic_name=eponine scaffold_12 . biological_region 249988 249995 0.999 - . logic_name=eponine scaffold_12 . biological_region 250007 250016 0.999 - . logic_name=eponine scaffold_12 . biological_region 250010 250014 0.999 + . logic_name=eponine scaffold_12 . biological_region 250046 250050 0.999 - . logic_name=eponine scaffold_12 . biological_region 250097 250106 0.999 - . logic_name=eponine scaffold_12 . biological_region 250128 250130 0.999 + . logic_name=eponine scaffold_12 . biological_region 250135 250138 0.999 + . logic_name=eponine scaffold_12 . biological_region 250187 250191 0.999 - . logic_name=eponine scaffold_12 . biological_region 250206 250208 0.999 - . logic_name=eponine scaffold_12 . biological_region 250226 250228 0.999 - . logic_name=eponine scaffold_12 . biological_region 255954 255958 0.999 + . logic_name=eponine scaffold_12 . repeat_region 257062 257169 . ? . description=trf scaffold_12 . repeat_region 259340 259371 . ? . description=trf scaffold_12 . exon 249905 249973 . + . ID=Phyra75322.9;Parent=Phyra75322;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_12 . exon 250044 250255 . + . ID=Phyra75322.10;Parent=Phyra75322;constitutive=1;ensembl_phase=1;rank=10 scaffold_12 ensembl protein_coding_gene 250974 252529 . + . ID=Phyra75323;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000070;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 250974 252529 . + . ID=Phyra75323;Parent=Phyra75323;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 250974 251094 . + 0 ID=Phyra75323;Parent=Phyra75323;rank=1 scaffold_12 . exon 250974 251094 . + . ID=Phyra75323.1;Parent=Phyra75323;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 251167 251299 . + 0 ID=Phyra75323;Parent=Phyra75323;rank=2 scaffold_12 . exon 251167 251299 . + . ID=Phyra75323.2;Parent=Phyra75323;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 251335 251652 . + 0 ID=Phyra75323;Parent=Phyra75323;rank=3 scaffold_12 . exon 251335 251652 . + . ID=Phyra75323.3;Parent=Phyra75323;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_12 . CDS 251719 252529 . + 0 ID=Phyra75323;Parent=Phyra75323;rank=4 scaffold_12 . exon 251719 252529 . + . ID=Phyra75323.4;Parent=Phyra75323;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 ensembl protein_coding_gene 255059 255703 . - . ID=Phyra75324;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000071;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 255059 255703 . - . ID=Phyra75324;Parent=Phyra75324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 255059 255275 . - 0 ID=Phyra75324;Parent=Phyra75324;rank=3 scaffold_12 . exon 255059 255275 . - . ID=Phyra75324.3;Parent=Phyra75324;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 255348 255437 . - 0 ID=Phyra75324;Parent=Phyra75324;rank=2 scaffold_12 . exon 255348 255437 . - . ID=Phyra75324.2;Parent=Phyra75324;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_12 . CDS 255543 255703 . - 0 ID=Phyra75324;Parent=Phyra75324;rank=1 scaffold_12 . exon 255543 255703 . - . ID=Phyra75324.1;Parent=Phyra75324;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 255819 256737 . + . ID=Phyra75325;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000072;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 255819 256737 . + . ID=Phyra75325;Parent=Phyra75325;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 255819 256466 . + 0 ID=Phyra75325;Parent=Phyra75325;rank=1 scaffold_12 . exon 255819 256466 . + . ID=Phyra75325.1;Parent=Phyra75325;constitutive=1;rank=1 scaffold_12 . CDS 256540 256737 . + 0 ID=Phyra75325;Parent=Phyra75325;rank=2 scaffold_12 . exon 256540 256737 . + . ID=Phyra75325.2;Parent=Phyra75325;constitutive=1;rank=2 scaffold_12 ensembl protein_coding_gene 257435 258988 . + . ID=Phyra75326;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000073;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 257435 258988 . + . ID=Phyra75326;Parent=Phyra75326;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 257435 257639 . + 0 ID=Phyra75326;Parent=Phyra75326;rank=1 scaffold_12 . exon 257435 257639 . + . ID=Phyra75326.1;Parent=Phyra75326;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 257704 257783 . + 0 ID=Phyra75326;Parent=Phyra75326;rank=2 scaffold_12 . exon 257704 257783 . + . ID=Phyra75326.2;Parent=Phyra75326;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 258173 258988 . + 0 ID=Phyra75326;Parent=Phyra75326;rank=3 scaffold_12 . exon 258173 258988 . + . ID=Phyra75326.3;Parent=Phyra75326;constitutive=1;rank=3 scaffold_12 ensembl pseudogene 265556 266401 . - . ID=Phyra40378;biotype=pseudogene;external_name=gwEuk.12.7.1;logic_name=jgi_phyra1 scaffold_12 ensembl pseudogene 265556 266401 . - . ID=Phyra40378;Parent=Phyra40378;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_12 . exon 265556 265628 . - . ID=Phyra40378.5;Parent=Phyra40378;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_12 . exon 265718 265854 . - . ID=Phyra40378.4;Parent=Phyra40378;constitutive=1;ensembl_phase=1;rank=4 scaffold_12 . exon 265916 266098 . - . ID=Phyra40378.3;Parent=Phyra40378;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_12 . exon 266163 266211 . - . ID=Phyra40378.2;Parent=Phyra40378;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . exon 266294 266401 . - . ID=Phyra40378.1;Parent=Phyra40378;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 263229 264208 . - . ID=Phyra75328;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000075;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 263229 264208 . - . ID=Phyra75328;Parent=Phyra75328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 263229 263574 . - 0 ID=Phyra75328;Parent=Phyra75328;rank=3 scaffold_12 . exon 263229 263574 . - . ID=Phyra75328.3;Parent=Phyra75328;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 263641 263757 . - 0 ID=Phyra75328;Parent=Phyra75328;rank=2 scaffold_12 . exon 263641 263757 . - . ID=Phyra75328.2;Parent=Phyra75328;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_12 . CDS 263871 264208 . - 0 ID=Phyra75328;Parent=Phyra75328;rank=1 scaffold_12 . exon 263871 264208 . - . ID=Phyra75328.1;Parent=Phyra75328;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 260661 263015 . - . ID=Phyra94115;biotype=protein_coding;external_name=C_scaffold_12000029;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 260661 263015 . - . ID=Phyra94115;Parent=Phyra94115;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 260661 261719 . - 0 ID=Phyra94115;Parent=Phyra94115;rank=5 scaffold_12 . exon 260661 261719 . - . ID=Phyra94115.5;Parent=Phyra94115;constitutive=1;rank=5 scaffold_12 . CDS 262058 262385 . - 0 ID=Phyra94115;Parent=Phyra94115;rank=4 scaffold_12 . exon 262058 262385 . - . ID=Phyra94115.4;Parent=Phyra94115;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 . CDS 262453 262614 . - 0 ID=Phyra94115;Parent=Phyra94115;rank=3 scaffold_12 . exon 262453 262614 . - . ID=Phyra94115.3;Parent=Phyra94115;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_12 . CDS 262678 262915 . - 0 ID=Phyra94115;Parent=Phyra94115;rank=2 scaffold_12 . exon 262678 262915 . - . ID=Phyra94115.2;Parent=Phyra94115;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 262964 263015 . - 0 ID=Phyra94115;Parent=Phyra94115;rank=1 scaffold_12 . exon 262964 263015 . - . ID=Phyra94115.1;Parent=Phyra94115;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 266755 272070 . + . ID=Phyra94116;biotype=protein_coding;external_name=C_scaffold_12000030;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 266755 272070 . + . ID=Phyra94116;Parent=Phyra94116;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 266755 266789 . + 0 ID=Phyra94116;Parent=Phyra94116;rank=1 scaffold_12 . exon 266755 266789 . + . ID=Phyra94116.1;Parent=Phyra94116;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 266895 267185 . + 0 ID=Phyra94116;Parent=Phyra94116;rank=2 scaffold_12 . exon 266895 267185 . + . ID=Phyra94116.2;Parent=Phyra94116;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_12 . CDS 267251 267491 . + 0 ID=Phyra94116;Parent=Phyra94116;rank=3 scaffold_12 . exon 267251 267491 . + . ID=Phyra94116.3;Parent=Phyra94116;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 267637 267738 . + 0 ID=Phyra94116;Parent=Phyra94116;rank=4 scaffold_12 . exon 267637 267738 . + . ID=Phyra94116.4;Parent=Phyra94116;constitutive=1;rank=4 scaffold_12 . CDS 267823 267870 . + 0 ID=Phyra94116;Parent=Phyra94116;rank=5 scaffold_12 . exon 267823 267870 . + . ID=Phyra94116.5;Parent=Phyra94116;constitutive=1;rank=5 scaffold_12 . CDS 267942 267999 . + 0 ID=Phyra94116;Parent=Phyra94116;rank=6 scaffold_12 . exon 267942 267999 . + . ID=Phyra94116.6;Parent=Phyra94116;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_12 . CDS 268068 268300 . + 0 ID=Phyra94116;Parent=Phyra94116;rank=7 scaffold_12 . exon 268068 268300 . + . ID=Phyra94116.7;Parent=Phyra94116;constitutive=1;ensembl_phase=1;rank=7 scaffold_12 . CDS 268510 268557 . + 0 ID=Phyra94116;Parent=Phyra94116;rank=8 scaffold_12 . exon 268510 268557 . + . ID=Phyra94116.8;Parent=Phyra94116;constitutive=1;rank=8 scaffold_12 . CDS 269194 269328 . + 0 ID=Phyra94116;Parent=Phyra94116;rank=9 scaffold_12 . exon 269194 269328 . + . ID=Phyra94116.9;Parent=Phyra94116;constitutive=1;rank=9 scaffold_12 . CDS 269506 269668 . + 0 ID=Phyra94116;Parent=Phyra94116;rank=10 scaffold_12 . exon 269506 269668 . + . ID=Phyra94116.10;Parent=Phyra94116;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_12 . CDS 269849 270504 . + 0 ID=Phyra94116;Parent=Phyra94116;rank=11 scaffold_12 . CDS 270589 270951 . + 0 ID=Phyra94116;Parent=Phyra94116;rank=12 scaffold_12 . CDS 271123 271321 . + 0 ID=Phyra94116;Parent=Phyra94116;rank=13 scaffold_12 . CDS 271376 272070 . + 0 ID=Phyra94116;Parent=Phyra94116;rank=14 scaffold_12 . biological_region 278922 278927 0.999 - . logic_name=eponine scaffold_12 . biological_region 279019 279023 0.999 + . logic_name=eponine scaffold_12 . biological_region 279699 279704 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 272309 273046 . - . ID=Phyra71297;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_12000006;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 272309 273046 . - . ID=Phyra71297;Parent=Phyra71297;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 272309 273046 . - 0 ID=Phyra71297;Parent=Phyra71297;rank=1 scaffold_12 . exon 272309 273046 . - . ID=Phyra71297.1;Parent=Phyra71297;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 273470 275521 . + . ID=Phyra75333;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000080;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 273470 275521 . + . ID=Phyra75333;Parent=Phyra75333;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 273470 275521 . + 0 ID=Phyra75333;Parent=Phyra75333;rank=1 scaffold_12 . exon 273470 275521 . + . ID=Phyra75333.1;Parent=Phyra75333;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 275675 279145 . - . ID=Phyra75334;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000081;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 275675 279145 . - . ID=Phyra75334;Parent=Phyra75334;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 275675 279145 . - 0 ID=Phyra75334;Parent=Phyra75334;rank=1 scaffold_12 . exon 275675 279145 . - . ID=Phyra75334.1;Parent=Phyra75334;constitutive=1;rank=1 scaffold_12 . exon 269849 270504 . + . ID=Phyra94116.11;Parent=Phyra94116;constitutive=1;ensembl_phase=1;rank=11 scaffold_12 . exon 270589 270951 . + . ID=Phyra94116.12;Parent=Phyra94116;constitutive=1;rank=12 scaffold_12 . exon 271123 271321 . + . ID=Phyra94116.13;Parent=Phyra94116;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_12 . exon 271376 272070 . + . ID=Phyra94116.14;Parent=Phyra94116;constitutive=1;ensembl_phase=1;rank=14 scaffold_12 ensembl protein_coding_gene 280661 281452 . + . ID=Phyra75335;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000082;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 280661 281452 . + . ID=Phyra75335;Parent=Phyra75335;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 280661 281452 . + 0 ID=Phyra75335;Parent=Phyra75335;rank=1 scaffold_12 . exon 280661 281452 . + . ID=Phyra75335.1;Parent=Phyra75335;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 284696 286701 . - . ID=Phyra75336;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000083;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 284696 286701 . - . ID=Phyra75336;Parent=Phyra75336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 284696 284713 . - 0 ID=Phyra75336;Parent=Phyra75336;rank=4 scaffold_12 . exon 284696 284713 . - . ID=Phyra75336.4;Parent=Phyra75336;constitutive=1;rank=4 scaffold_12 . CDS 284745 284932 . - 0 ID=Phyra75336;Parent=Phyra75336;rank=3 scaffold_12 . exon 284745 284932 . - . ID=Phyra75336.3;Parent=Phyra75336;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 285086 286386 . - 0 ID=Phyra75336;Parent=Phyra75336;rank=2 scaffold_12 . exon 285086 286386 . - . ID=Phyra75336.2;Parent=Phyra75336;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 286475 286701 . - 0 ID=Phyra75336;Parent=Phyra75336;rank=1 scaffold_12 . exon 286475 286701 . - . ID=Phyra75336.1;Parent=Phyra75336;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 287405 290280 . + . ID=Phyra94118;biotype=protein_coding;external_name=C_scaffold_12000032;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 287405 290280 . + . ID=Phyra94118;Parent=Phyra94118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 287405 287793 . + 0 ID=Phyra94118;Parent=Phyra94118;rank=1 scaffold_12 . exon 287405 287793 . + . ID=Phyra94118.1;Parent=Phyra94118;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 287851 287923 . + 0 ID=Phyra94118;Parent=Phyra94118;rank=2 scaffold_12 . exon 287851 287923 . + . ID=Phyra94118.2;Parent=Phyra94118;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 287988 288110 . + 0 ID=Phyra94118;Parent=Phyra94118;rank=3 scaffold_12 . exon 287988 288110 . + . ID=Phyra94118.3;Parent=Phyra94118;constitutive=1;rank=3 scaffold_12 . CDS 288347 288583 . + 0 ID=Phyra94118;Parent=Phyra94118;rank=4 scaffold_12 . exon 288347 288583 . + . ID=Phyra94118.4;Parent=Phyra94118;constitutive=1;rank=4 scaffold_12 . CDS 288658 288776 . + 0 ID=Phyra94118;Parent=Phyra94118;rank=5 scaffold_12 . exon 288658 288776 . + . ID=Phyra94118.5;Parent=Phyra94118;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_12 . CDS 289336 289528 . + 0 ID=Phyra94118;Parent=Phyra94118;rank=6 scaffold_12 . exon 289336 289528 . + . ID=Phyra94118.6;Parent=Phyra94118;constitutive=1;ensembl_phase=2;rank=6 scaffold_12 . CDS 289596 290192 . + 0 ID=Phyra94118;Parent=Phyra94118;rank=7 scaffold_12 . exon 289596 290192 . + . ID=Phyra94118.7;Parent=Phyra94118;constitutive=1;rank=7 scaffold_12 . CDS 290239 290280 . + 0 ID=Phyra94118;Parent=Phyra94118;rank=8 scaffold_12 . biological_region 290619 290621 0.999 - . logic_name=eponine scaffold_12 . repeat_region 291978 291985 . ? . description=dust scaffold_12 . biological_region 291988 291993 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 290720 292018 . - . ID=Phyra75339;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000086;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 290720 292018 . - . ID=Phyra75339;Parent=Phyra75339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 290720 290768 . - 0 ID=Phyra75339;Parent=Phyra75339;rank=2 scaffold_12 . exon 290720 290768 . - . ID=Phyra75339.2;Parent=Phyra75339;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 290919 292018 . - 0 ID=Phyra75339;Parent=Phyra75339;rank=1 scaffold_12 . exon 290919 292018 . - . ID=Phyra75339.1;Parent=Phyra75339;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 293367 295118 . + . ID=Phyra75340;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000087;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 293367 295118 . + . ID=Phyra75340;Parent=Phyra75340;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 293367 293401 . + 0 ID=Phyra75340;Parent=Phyra75340;rank=1 scaffold_12 . exon 293367 293401 . + . ID=Phyra75340.1;Parent=Phyra75340;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 293470 294041 . + 0 ID=Phyra75340;Parent=Phyra75340;rank=2 scaffold_12 . exon 293470 294041 . + . ID=Phyra75340.2;Parent=Phyra75340;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 294322 294494 . + 0 ID=Phyra75340;Parent=Phyra75340;rank=3 scaffold_12 . exon 294322 294494 . + . ID=Phyra75340.3;Parent=Phyra75340;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 294613 295064 . + 0 ID=Phyra75340;Parent=Phyra75340;rank=4 scaffold_12 . exon 294613 295064 . + . ID=Phyra75340.4;Parent=Phyra75340;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_12 . CDS 295109 295118 . + 0 ID=Phyra75340;Parent=Phyra75340;rank=5 scaffold_12 . exon 295109 295118 . + . ID=Phyra75340.5;Parent=Phyra75340;constitutive=1;ensembl_phase=2;rank=5 scaffold_12 ensembl protein_coding_gene 295425 298187 . - . ID=Phyra75341;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000088;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 295425 298187 . - . ID=Phyra75341;Parent=Phyra75341;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 295425 298187 . - 0 ID=Phyra75341;Parent=Phyra75341;rank=1 scaffold_12 . exon 295425 298187 . - . ID=Phyra75341.1;Parent=Phyra75341;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 299495 300461 . + . ID=Phyra75342;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000089;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 299495 300461 . + . ID=Phyra75342;Parent=Phyra75342;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 299495 299763 . + 0 ID=Phyra75342;Parent=Phyra75342;rank=1 scaffold_12 . exon 299495 299763 . + . ID=Phyra75342.1;Parent=Phyra75342;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 299825 299883 . + 0 ID=Phyra75342;Parent=Phyra75342;rank=2 scaffold_12 . CDS 299960 300015 . + 0 ID=Phyra75342;Parent=Phyra75342;rank=3 scaffold_12 . CDS 300093 300203 . + 0 ID=Phyra75342;Parent=Phyra75342;rank=4 scaffold_12 . CDS 300252 300461 . + 0 ID=Phyra75342;Parent=Phyra75342;rank=5 scaffold_12 . exon 290239 290280 . + . ID=Phyra94118.8;Parent=Phyra94118;constitutive=1;rank=8 scaffold_12 . exon 299825 299883 . + . ID=Phyra75342.2;Parent=Phyra75342;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_12 . exon 299960 300015 . + . ID=Phyra75342.3;Parent=Phyra75342;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . exon 300093 300203 . + . ID=Phyra75342.4;Parent=Phyra75342;constitutive=1;rank=4 scaffold_12 . exon 300252 300461 . + . ID=Phyra75342.5;Parent=Phyra75342;constitutive=1;rank=5 scaffold_12 ensembl protein_coding_gene 300639 306026 . - . ID=Phyra94120;biotype=protein_coding;external_name=C_scaffold_12000034;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 300639 306026 . - . ID=Phyra94120;Parent=Phyra94120;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 300639 301207 . - 0 ID=Phyra94120;Parent=Phyra94120;rank=14 scaffold_12 . exon 300639 301207 . - . ID=Phyra94120.14;Parent=Phyra94120;constitutive=1;ensembl_phase=1;rank=14 scaffold_12 . CDS 301933 302059 . - 0 ID=Phyra94120;Parent=Phyra94120;rank=13 scaffold_12 . exon 301933 302059 . - . ID=Phyra94120.13;Parent=Phyra94120;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_12 . CDS 302130 302832 . - 0 ID=Phyra94120;Parent=Phyra94120;rank=12 scaffold_12 . exon 302130 302832 . - . ID=Phyra94120.12;Parent=Phyra94120;constitutive=1;ensembl_phase=2;rank=12 scaffold_12 . CDS 302968 303184 . - 0 ID=Phyra94120;Parent=Phyra94120;rank=11 scaffold_12 . exon 302968 303184 . - . ID=Phyra94120.11;Parent=Phyra94120;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_12 . CDS 303332 303464 . - 0 ID=Phyra94120;Parent=Phyra94120;rank=10 scaffold_12 . exon 303332 303464 . - . ID=Phyra94120.10;Parent=Phyra94120;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_12 . CDS 303557 303968 . - 0 ID=Phyra94120;Parent=Phyra94120;rank=9 scaffold_12 . exon 303557 303968 . - . ID=Phyra94120.9;Parent=Phyra94120;constitutive=1;ensembl_phase=2;rank=9 scaffold_12 . CDS 304038 304105 . - 0 ID=Phyra94120;Parent=Phyra94120;rank=8 scaffold_12 . exon 304038 304105 . - . ID=Phyra94120.8;Parent=Phyra94120;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_12 . CDS 304170 304310 . - 0 ID=Phyra94120;Parent=Phyra94120;rank=7 scaffold_12 . exon 304170 304310 . - . ID=Phyra94120.7;Parent=Phyra94120;constitutive=1;rank=7 scaffold_12 . CDS 304385 304537 . - 0 ID=Phyra94120;Parent=Phyra94120;rank=6 scaffold_12 . exon 304385 304537 . - . ID=Phyra94120.6;Parent=Phyra94120;constitutive=1;rank=6 scaffold_12 . CDS 304625 304738 . - 0 ID=Phyra94120;Parent=Phyra94120;rank=5 scaffold_12 . exon 304625 304738 . - . ID=Phyra94120.5;Parent=Phyra94120;constitutive=1;rank=5 scaffold_12 . CDS 304832 305023 . - 0 ID=Phyra94120;Parent=Phyra94120;rank=4 scaffold_12 . exon 304832 305023 . - . ID=Phyra94120.4;Parent=Phyra94120;constitutive=1;rank=4 scaffold_12 . CDS 305051 305209 . - 0 ID=Phyra94120;Parent=Phyra94120;rank=3 scaffold_12 . exon 305051 305209 . - . ID=Phyra94120.3;Parent=Phyra94120;constitutive=1;rank=3 scaffold_12 . CDS 305280 305405 . - 0 ID=Phyra94120;Parent=Phyra94120;rank=2 scaffold_12 . exon 305280 305405 . - . ID=Phyra94120.2;Parent=Phyra94120;constitutive=1;rank=2 scaffold_12 . CDS 305457 306026 . - 0 ID=Phyra94120;Parent=Phyra94120;rank=1 scaffold_12 . exon 305457 306026 . - . ID=Phyra94120.1;Parent=Phyra94120;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 306164 307899 . - . ID=Phyra94123;biotype=protein_coding;external_name=C_scaffold_12000037;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 306164 307899 . - . ID=Phyra94123;Parent=Phyra94123;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 306164 306387 . - 0 ID=Phyra94123;Parent=Phyra94123;rank=7 scaffold_12 . exon 306164 306387 . - . ID=Phyra94123.7;Parent=Phyra94123;constitutive=1;ensembl_phase=1;rank=7 scaffold_12 . CDS 306464 306638 . - 0 ID=Phyra94123;Parent=Phyra94123;rank=6 scaffold_12 . exon 306464 306638 . - . ID=Phyra94123.6;Parent=Phyra94123;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_12 . CDS 306700 306981 . - 0 ID=Phyra94123;Parent=Phyra94123;rank=5 scaffold_12 . exon 306700 306981 . - . ID=Phyra94123.5;Parent=Phyra94123;constitutive=1;rank=5 scaffold_12 . CDS 307067 307263 . - 0 ID=Phyra94123;Parent=Phyra94123;rank=4 scaffold_12 . exon 307067 307263 . - . ID=Phyra94123.4;Parent=Phyra94123;constitutive=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 307330 307431 . - 0 ID=Phyra94123;Parent=Phyra94123;rank=3 scaffold_12 . exon 307330 307431 . - . ID=Phyra94123.3;Parent=Phyra94123;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 307489 307528 . - 0 ID=Phyra94123;Parent=Phyra94123;rank=2 scaffold_12 . exon 307489 307528 . - . ID=Phyra94123.2;Parent=Phyra94123;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 307600 307899 . - 0 ID=Phyra94123;Parent=Phyra94123;rank=1 scaffold_12 . exon 307600 307899 . - . ID=Phyra94123.1;Parent=Phyra94123;constitutive=1;rank=1 scaffold_12 . biological_region 309925 309926 0.999 + . logic_name=eponine scaffold_12 . biological_region 310708 310712 0.999 + . logic_name=eponine scaffold_12 . biological_region 310757 310761 0.999 + . logic_name=eponine scaffold_12 . repeat_region 311819 311843 . ? . description=trf scaffold_12 . biological_region 312187 312187 0.999 - . logic_name=eponine scaffold_12 . biological_region 315446 315448 0.999 - . logic_name=eponine scaffold_12 . repeat_region 315631 315680 . ? . description=dust scaffold_12 . repeat_region 316003 316016 . ? . description=dust scaffold_12 . biological_region 316246 316250 0.999 - . logic_name=eponine scaffold_12 . biological_region 317310 317311 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 317676 318819 . + . ID=Phyra71299;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_12000008;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 317676 318819 . + . ID=Phyra71299;Parent=Phyra71299;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 317676 318049 . + 0 ID=Phyra71299;Parent=Phyra71299;rank=1 scaffold_12 . exon 317676 318049 . + . ID=Phyra71299.1;Parent=Phyra71299;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 318123 318278 . + 0 ID=Phyra71299;Parent=Phyra71299;rank=2 scaffold_12 . exon 318123 318278 . + . ID=Phyra71299.2;Parent=Phyra71299;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_12 . CDS 318376 318553 . + 0 ID=Phyra71299;Parent=Phyra71299;rank=3 scaffold_12 . exon 318376 318553 . + . ID=Phyra71299.3;Parent=Phyra71299;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 318634 318819 . + 0 ID=Phyra71299;Parent=Phyra71299;rank=4 scaffold_12 . exon 318634 318819 . + . ID=Phyra71299.4;Parent=Phyra71299;constitutive=1;rank=4 scaffold_12 ensembl protein_coding_gene 314039 314927 . - . ID=Phyra75347;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000094;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 314039 314927 . - . ID=Phyra75347;Parent=Phyra75347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 314039 314250 . - 0 ID=Phyra75347;Parent=Phyra75347;rank=5 scaffold_12 . exon 314039 314250 . - . ID=Phyra75347.5;Parent=Phyra75347;constitutive=1;ensembl_phase=1;rank=5 scaffold_12 . CDS 314327 314462 . - 0 ID=Phyra75347;Parent=Phyra75347;rank=4 scaffold_12 . exon 314327 314462 . - . ID=Phyra75347.4;Parent=Phyra75347;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_12 . CDS 314534 314677 . - 0 ID=Phyra75347;Parent=Phyra75347;rank=3 scaffold_12 . exon 314534 314677 . - . ID=Phyra75347.3;Parent=Phyra75347;constitutive=1;rank=3 scaffold_12 . CDS 314741 314774 . - 0 ID=Phyra75347;Parent=Phyra75347;rank=2 scaffold_12 . exon 314741 314774 . - . ID=Phyra75347.2;Parent=Phyra75347;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 314851 314927 . - 0 ID=Phyra75347;Parent=Phyra75347;rank=1 scaffold_12 . exon 314851 314927 . - . ID=Phyra75347.1;Parent=Phyra75347;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 310452 311219 . - . ID=Phyra94125;biotype=protein_coding;external_name=C_scaffold_12000039;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 310452 311219 . - . ID=Phyra94125;Parent=Phyra94125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 310452 311219 . - 0 ID=Phyra94125;Parent=Phyra94125;rank=1 scaffold_12 . exon 310452 311219 . - . ID=Phyra94125.1;Parent=Phyra94125;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 311729 313749 . + . ID=Phyra94126;biotype=protein_coding;external_name=C_scaffold_12000040;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 311729 313749 . + . ID=Phyra94126;Parent=Phyra94126;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 311729 311853 . + 0 ID=Phyra94126;Parent=Phyra94126;rank=1 scaffold_12 . exon 311729 311853 . + . ID=Phyra94126.1;Parent=Phyra94126;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 311941 312266 . + 0 ID=Phyra94126;Parent=Phyra94126;rank=2 scaffold_12 . exon 311941 312266 . + . ID=Phyra94126.2;Parent=Phyra94126;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 312345 312448 . + 0 ID=Phyra94126;Parent=Phyra94126;rank=3 scaffold_12 . exon 312345 312448 . + . ID=Phyra94126.3;Parent=Phyra94126;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 312513 312572 . + 0 ID=Phyra94126;Parent=Phyra94126;rank=4 scaffold_12 . exon 312513 312572 . + . ID=Phyra94126.4;Parent=Phyra94126;constitutive=1;rank=4 scaffold_12 . CDS 312639 312846 . + 0 ID=Phyra94126;Parent=Phyra94126;rank=5 scaffold_12 . exon 312639 312846 . + . ID=Phyra94126.5;Parent=Phyra94126;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_12 . CDS 312892 312979 . + 0 ID=Phyra94126;Parent=Phyra94126;rank=6 scaffold_12 . exon 312892 312979 . + . ID=Phyra94126.6;Parent=Phyra94126;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_12 . CDS 313094 313298 . + 0 ID=Phyra94126;Parent=Phyra94126;rank=7 scaffold_12 . exon 313094 313298 . + . ID=Phyra94126.7;Parent=Phyra94126;constitutive=1;ensembl_phase=2;rank=7 scaffold_12 . CDS 313323 313460 . + 0 ID=Phyra94126;Parent=Phyra94126;rank=8 scaffold_12 . exon 313323 313460 . + . ID=Phyra94126.8;Parent=Phyra94126;constitutive=1;rank=8 scaffold_12 . CDS 313537 313749 . + 0 ID=Phyra94126;Parent=Phyra94126;rank=9 scaffold_12 . exon 313537 313749 . + . ID=Phyra94126.9;Parent=Phyra94126;constitutive=1;rank=9 scaffold_12 ensembl protein_coding_gene 316151 317413 . + . ID=Phyra94130;biotype=protein_coding;external_name=C_scaffold_12000044;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 316151 317413 . + . ID=Phyra94130;Parent=Phyra94130;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 316151 316531 . + 0 ID=Phyra94130;Parent=Phyra94130;rank=1 scaffold_12 . exon 316151 316531 . + . ID=Phyra94130.1;Parent=Phyra94130;constitutive=1;rank=1 scaffold_12 . CDS 316605 316764 . + 0 ID=Phyra94130;Parent=Phyra94130;rank=2 scaffold_12 . exon 316605 316764 . + . ID=Phyra94130.2;Parent=Phyra94130;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 316829 316904 . + 0 ID=Phyra94130;Parent=Phyra94130;rank=3 scaffold_12 . exon 316829 316904 . + . ID=Phyra94130.3;Parent=Phyra94130;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_12 . CDS 316969 317076 . + 0 ID=Phyra94130;Parent=Phyra94130;rank=4 scaffold_12 . exon 316969 317076 . + . ID=Phyra94130.4;Parent=Phyra94130;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_12 . CDS 317161 317413 . + 0 ID=Phyra94130;Parent=Phyra94130;rank=5 scaffold_12 . exon 317161 317413 . + . ID=Phyra94130.5;Parent=Phyra94130;constitutive=1;ensembl_phase=2;rank=5 scaffold_12 ensembl protein_coding_gene 323989 327402 . + . ID=Phyra75351;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000098;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 323989 327402 . + . ID=Phyra75351;Parent=Phyra75351;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 323989 327402 . + 0 ID=Phyra75351;Parent=Phyra75351;rank=1 scaffold_12 . exon 323989 327402 . + . ID=Phyra75351.1;Parent=Phyra75351;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 327788 329709 . - . ID=Phyra75352;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000099;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 327788 329709 . - . ID=Phyra75352;Parent=Phyra75352;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 327788 327973 . - 0 ID=Phyra75352;Parent=Phyra75352;rank=2 scaffold_12 . exon 327788 327973 . - . ID=Phyra75352.2;Parent=Phyra75352;constitutive=1;rank=2 scaffold_12 . CDS 328204 329709 . - 0 ID=Phyra75352;Parent=Phyra75352;rank=1 scaffold_12 . exon 328204 329709 . - . ID=Phyra75352.1;Parent=Phyra75352;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 320387 322716 . + . ID=Phyra94131;biotype=protein_coding;external_name=C_scaffold_12000045;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 320387 322716 . + . ID=Phyra94131;Parent=Phyra94131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 320387 320805 . + 0 ID=Phyra94131;Parent=Phyra94131;rank=1 scaffold_12 . exon 320387 320805 . + . ID=Phyra94131.1;Parent=Phyra94131;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 321133 321222 . + 0 ID=Phyra94131;Parent=Phyra94131;rank=2 scaffold_12 . exon 321133 321222 . + . ID=Phyra94131.2;Parent=Phyra94131;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_12 . CDS 321538 321606 . + 0 ID=Phyra94131;Parent=Phyra94131;rank=3 scaffold_12 . exon 321538 321606 . + . ID=Phyra94131.3;Parent=Phyra94131;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_12 . CDS 321668 321824 . + 0 ID=Phyra94131;Parent=Phyra94131;rank=4 scaffold_12 . exon 321668 321824 . + . ID=Phyra94131.4;Parent=Phyra94131;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 . CDS 321987 322080 . + 0 ID=Phyra94131;Parent=Phyra94131;rank=5 scaffold_12 . exon 321987 322080 . + . ID=Phyra94131.5;Parent=Phyra94131;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_12 . CDS 322148 322716 . + 0 ID=Phyra94131;Parent=Phyra94131;rank=6 scaffold_12 . exon 322148 322716 . + . ID=Phyra94131.6;Parent=Phyra94131;constitutive=1;ensembl_phase=1;rank=6 scaffold_12 . repeat_region 329650 329674 . ? . description=trf scaffold_12 . biological_region 330020 330022 0.999 - . logic_name=eponine scaffold_12 . biological_region 333292 333298 0.999 + . logic_name=eponine scaffold_12 . biological_region 333434 333437 0.999 - . logic_name=eponine scaffold_12 . biological_region 333791 333794 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 329914 332342 . + . ID=Phyra75353;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000100;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 329914 332342 . + . ID=Phyra75353;Parent=Phyra75353;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 329914 330163 . + 0 ID=Phyra75353;Parent=Phyra75353;rank=1 scaffold_12 . exon 329914 330163 . + . ID=Phyra75353.1;Parent=Phyra75353;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 330228 330469 . + 0 ID=Phyra75353;Parent=Phyra75353;rank=2 scaffold_12 . exon 330228 330469 . + . ID=Phyra75353.2;Parent=Phyra75353;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 330534 330653 . + 0 ID=Phyra75353;Parent=Phyra75353;rank=3 scaffold_12 . exon 330534 330653 . + . ID=Phyra75353.3;Parent=Phyra75353;constitutive=1;rank=3 scaffold_12 . CDS 330724 331423 . + 0 ID=Phyra75353;Parent=Phyra75353;rank=4 scaffold_12 . exon 330724 331423 . + . ID=Phyra75353.4;Parent=Phyra75353;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_12 . CDS 331557 331684 . + 0 ID=Phyra75353;Parent=Phyra75353;rank=5 scaffold_12 . exon 331557 331684 . + . ID=Phyra75353.5;Parent=Phyra75353;constitutive=1;ensembl_phase=1;rank=5 scaffold_12 . CDS 331765 332105 . + 0 ID=Phyra75353;Parent=Phyra75353;rank=6 scaffold_12 . exon 331765 332105 . + . ID=Phyra75353.6;Parent=Phyra75353;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_12 . CDS 332177 332342 . + 0 ID=Phyra75353;Parent=Phyra75353;rank=7 scaffold_12 . exon 332177 332342 . + . ID=Phyra75353.7;Parent=Phyra75353;constitutive=1;ensembl_phase=2;rank=7 scaffold_12 ensembl protein_coding_gene 333613 336075 . + . ID=Phyra75354;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000101;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 333613 336075 . + . ID=Phyra75354;Parent=Phyra75354;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 333613 336075 . + 0 ID=Phyra75354;Parent=Phyra75354;rank=1 scaffold_12 . exon 333613 336075 . + . ID=Phyra75354.1;Parent=Phyra75354;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 336428 338157 . - . ID=Phyra75355;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000102;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 336428 338157 . - . ID=Phyra75355;Parent=Phyra75355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 336428 336907 . - 0 ID=Phyra75355;Parent=Phyra75355;rank=7 scaffold_12 . exon 336428 336907 . - . ID=Phyra75355.7;Parent=Phyra75355;constitutive=1;rank=7 scaffold_12 . CDS 337050 337157 . - 0 ID=Phyra75355;Parent=Phyra75355;rank=6 scaffold_12 . exon 337050 337157 . - . ID=Phyra75355.6;Parent=Phyra75355;constitutive=1;rank=6 scaffold_12 . CDS 337231 337302 . - 0 ID=Phyra75355;Parent=Phyra75355;rank=5 scaffold_12 . exon 337231 337302 . - . ID=Phyra75355.5;Parent=Phyra75355;constitutive=1;rank=5 scaffold_12 . CDS 337414 337518 . - 0 ID=Phyra75355;Parent=Phyra75355;rank=4 scaffold_12 . exon 337414 337518 . - . ID=Phyra75355.4;Parent=Phyra75355;constitutive=1;rank=4 scaffold_12 . CDS 337583 337690 . - 0 ID=Phyra75355;Parent=Phyra75355;rank=3 scaffold_12 . exon 337583 337690 . - . ID=Phyra75355.3;Parent=Phyra75355;constitutive=1;rank=3 scaffold_12 . CDS 337764 337880 . - 0 ID=Phyra75355;Parent=Phyra75355;rank=2 scaffold_12 . exon 337764 337880 . - . ID=Phyra75355.2;Parent=Phyra75355;constitutive=1;rank=2 scaffold_12 . CDS 337942 338157 . - 0 ID=Phyra75355;Parent=Phyra75355;rank=1 scaffold_12 . exon 337942 338157 . - . ID=Phyra75355.1;Parent=Phyra75355;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 338312 340477 . + . ID=Phyra75356;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000103;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 338312 340477 . + . ID=Phyra75356;Parent=Phyra75356;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 338312 339230 . + 0 ID=Phyra75356;Parent=Phyra75356;rank=1 scaffold_12 . exon 338312 339230 . + . ID=Phyra75356.1;Parent=Phyra75356;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 339313 339442 . + 0 ID=Phyra75356;Parent=Phyra75356;rank=2 scaffold_12 . exon 339313 339442 . + . ID=Phyra75356.2;Parent=Phyra75356;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 339522 339723 . + 0 ID=Phyra75356;Parent=Phyra75356;rank=3 scaffold_12 . exon 339522 339723 . + . ID=Phyra75356.3;Parent=Phyra75356;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 339809 340477 . + 0 ID=Phyra75356;Parent=Phyra75356;rank=4 scaffold_12 . exon 339809 340477 . + . ID=Phyra75356.4;Parent=Phyra75356;constitutive=1;rank=4 scaffold_12 ensembl protein_coding_gene 346180 347320 . - . ID=Phyra75357;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000104;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 346180 347320 . - . ID=Phyra75357;Parent=Phyra75357;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 346180 346215 . - 0 ID=Phyra75357;Parent=Phyra75357;rank=2 scaffold_12 . exon 346180 346215 . - . ID=Phyra75357.2;Parent=Phyra75357;constitutive=1;rank=2 scaffold_12 . CDS 346523 347320 . - 0 ID=Phyra75357;Parent=Phyra75357;rank=1 scaffold_12 . exon 346523 347320 . - . ID=Phyra75357.1;Parent=Phyra75357;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 347497 348145 . + . ID=Phyra75358;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000105;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 347497 348145 . + . ID=Phyra75358;Parent=Phyra75358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 347497 348111 . + 0 ID=Phyra75358;Parent=Phyra75358;rank=1 scaffold_12 . exon 347497 348111 . + . ID=Phyra75358.1;Parent=Phyra75358;constitutive=1;rank=1 scaffold_12 . CDS 348143 348145 . + 0 ID=Phyra75358;Parent=Phyra75358;rank=2 scaffold_12 . exon 348143 348145 . + . ID=Phyra75358.2;Parent=Phyra75358;constitutive=1;rank=2 scaffold_12 ensembl protein_coding_gene 348398 353616 . - . ID=Phyra94134;biotype=protein_coding;external_name=C_scaffold_12000048;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 348398 353616 . - . ID=Phyra94134;Parent=Phyra94134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 348398 349415 . - 0 ID=Phyra94134;Parent=Phyra94134;rank=7 scaffold_12 . exon 348398 349415 . - . ID=Phyra94134.7;Parent=Phyra94134;constitutive=1;ensembl_phase=2;rank=7 scaffold_12 . CDS 349587 349762 . - 0 ID=Phyra94134;Parent=Phyra94134;rank=6 scaffold_12 . exon 349587 349762 . - . ID=Phyra94134.6;Parent=Phyra94134;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_12 . CDS 349835 349988 . - 0 ID=Phyra94134;Parent=Phyra94134;rank=5 scaffold_12 . CDS 350217 351556 . - 0 ID=Phyra94134;Parent=Phyra94134;rank=4 scaffold_12 . CDS 351596 351670 . - 0 ID=Phyra94134;Parent=Phyra94134;rank=3 scaffold_12 . CDS 351863 353152 . - 0 ID=Phyra94134;Parent=Phyra94134;rank=2 scaffold_12 . CDS 353296 353616 . - 0 ID=Phyra94134;Parent=Phyra94134;rank=1 scaffold_12 . biological_region 350993 350997 0.999 - . logic_name=eponine scaffold_12 . biological_region 354216 354217 0.999 + . logic_name=eponine scaffold_12 . biological_region 354296 354298 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 354014 358261 . + . ID=Phyra75362;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000109;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 354014 358261 . + . ID=Phyra75362;Parent=Phyra75362;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 354014 355621 . + 0 ID=Phyra75362;Parent=Phyra75362;rank=1 scaffold_12 . exon 354014 355621 . + . ID=Phyra75362.1;Parent=Phyra75362;constitutive=1;rank=1 scaffold_12 . CDS 356144 356519 . + 0 ID=Phyra75362;Parent=Phyra75362;rank=2 scaffold_12 . exon 356144 356519 . + . ID=Phyra75362.2;Parent=Phyra75362;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 356778 358261 . + 0 ID=Phyra75362;Parent=Phyra75362;rank=3 scaffold_12 . exon 356778 358261 . + . ID=Phyra75362.3;Parent=Phyra75362;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 ensembl protein_coding_gene 358510 359167 . - . ID=Phyra75363;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000110;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 358510 359167 . - . ID=Phyra75363;Parent=Phyra75363;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 358510 358580 . - 0 ID=Phyra75363;Parent=Phyra75363;rank=5 scaffold_12 . exon 358510 358580 . - . ID=Phyra75363.5;Parent=Phyra75363;constitutive=1;ensembl_phase=1;rank=5 scaffold_12 . CDS 358645 358732 . - 0 ID=Phyra75363;Parent=Phyra75363;rank=4 scaffold_12 . exon 358645 358732 . - . ID=Phyra75363.4;Parent=Phyra75363;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_12 . CDS 358806 358913 . - 0 ID=Phyra75363;Parent=Phyra75363;rank=3 scaffold_12 . exon 358806 358913 . - . ID=Phyra75363.3;Parent=Phyra75363;constitutive=1;rank=3 scaffold_12 . CDS 358983 359096 . - 0 ID=Phyra75363;Parent=Phyra75363;rank=2 scaffold_12 . exon 358983 359096 . - . ID=Phyra75363.2;Parent=Phyra75363;constitutive=1;rank=2 scaffold_12 . CDS 359120 359167 . - 0 ID=Phyra75363;Parent=Phyra75363;rank=1 scaffold_12 . exon 359120 359167 . - . ID=Phyra75363.1;Parent=Phyra75363;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 359300 361250 . + . ID=Phyra75364;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000111;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 359300 361250 . + . ID=Phyra75364;Parent=Phyra75364;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 359300 359425 . + 0 ID=Phyra75364;Parent=Phyra75364;rank=1 scaffold_12 . exon 359300 359425 . + . ID=Phyra75364.1;Parent=Phyra75364;constitutive=1;rank=1 scaffold_12 . CDS 359504 359749 . + 0 ID=Phyra75364;Parent=Phyra75364;rank=2 scaffold_12 . exon 359504 359749 . + . ID=Phyra75364.2;Parent=Phyra75364;constitutive=1;rank=2 scaffold_12 . CDS 359825 359955 . + 0 ID=Phyra75364;Parent=Phyra75364;rank=3 scaffold_12 . CDS 360020 360170 . + 0 ID=Phyra75364;Parent=Phyra75364;rank=4 scaffold_12 . CDS 360214 360257 . + 0 ID=Phyra75364;Parent=Phyra75364;rank=5 scaffold_12 . CDS 360403 361164 . + 0 ID=Phyra75364;Parent=Phyra75364;rank=6 scaffold_12 . CDS 361226 361250 . + 0 ID=Phyra75364;Parent=Phyra75364;rank=7 scaffold_12 . exon 349835 349988 . - . ID=Phyra94134.5;Parent=Phyra94134;constitutive=1;ensembl_phase=2;rank=5 scaffold_12 . exon 350217 351556 . - . ID=Phyra94134.4;Parent=Phyra94134;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_12 . exon 351596 351670 . - . ID=Phyra94134.3;Parent=Phyra94134;constitutive=1;rank=3 scaffold_12 . exon 351863 353152 . - . ID=Phyra94134.2;Parent=Phyra94134;constitutive=1;rank=2 scaffold_12 . exon 353296 353616 . - . ID=Phyra94134.1;Parent=Phyra94134;constitutive=1;rank=1 scaffold_12 . repeat_region 368143 368192 . ? . description=dust scaffold_12 . repeat_region 369108 369157 . ? . description=dust scaffold_12 . exon 359825 359955 . + . ID=Phyra75364.3;Parent=Phyra75364;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_12 . exon 360020 360170 . + . ID=Phyra75364.4;Parent=Phyra75364;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 . exon 360214 360257 . + . ID=Phyra75364.5;Parent=Phyra75364;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_12 . exon 360403 361164 . + . ID=Phyra75364.6;Parent=Phyra75364;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_12 . exon 361226 361250 . + . ID=Phyra75364.7;Parent=Phyra75364;constitutive=1;ensembl_phase=2;rank=7 scaffold_12 ensembl protein_coding_gene 361363 365766 . - . ID=Phyra75365;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000112;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 361363 365766 . - . ID=Phyra75365;Parent=Phyra75365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 361363 363441 . - 0 ID=Phyra75365;Parent=Phyra75365;rank=3 scaffold_12 . exon 361363 363441 . - . ID=Phyra75365.3;Parent=Phyra75365;constitutive=1;rank=3 scaffold_12 . CDS 363598 363865 . - 0 ID=Phyra75365;Parent=Phyra75365;rank=2 scaffold_12 . exon 363598 363865 . - . ID=Phyra75365.2;Parent=Phyra75365;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 364358 365766 . - 0 ID=Phyra75365;Parent=Phyra75365;rank=1 scaffold_12 . exon 364358 365766 . - . ID=Phyra75365.1;Parent=Phyra75365;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 369553 371593 . + . ID=Phyra75366;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000113;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 369553 371593 . + . ID=Phyra75366;Parent=Phyra75366;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 369553 369587 . + 0 ID=Phyra75366;Parent=Phyra75366;rank=1 scaffold_12 . exon 369553 369587 . + . ID=Phyra75366.1;Parent=Phyra75366;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 369806 371553 . + 0 ID=Phyra75366;Parent=Phyra75366;rank=2 scaffold_12 . CDS 371580 371593 . + 0 ID=Phyra75366;Parent=Phyra75366;rank=3 scaffold_12 . biological_region 369844 369848 0.999 + . logic_name=eponine scaffold_12 . biological_region 369897 369898 0.999 + . logic_name=eponine scaffold_12 . biological_region 369924 369924 0.999 - . logic_name=eponine scaffold_12 . biological_region 369961 369962 0.999 - . logic_name=eponine scaffold_12 . biological_region 369997 370002 0.999 + . logic_name=eponine scaffold_12 . biological_region 370053 370054 0.999 + . logic_name=eponine scaffold_12 . exon 369806 371553 . + . ID=Phyra75366.2;Parent=Phyra75366;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_12 . exon 371580 371593 . + . ID=Phyra75366.3;Parent=Phyra75366;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . repeat_region 371801 381111 . ? . description=dust scaffold_12 . repeat_region 381438 381493 . ? . description=trf scaffold_12 . repeat_region 381991 383535 . ? . description=dust scaffold_12 . repeat_region 384862 385181 . ? . description=dust scaffold_12 ensembl protein_coding_gene 387003 388085 . - . ID=Phyra75367;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000114;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 387003 388085 . - . ID=Phyra75367;Parent=Phyra75367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 387003 388085 . - 0 ID=Phyra75367;Parent=Phyra75367;rank=1 scaffold_12 . exon 387003 388085 . - . ID=Phyra75367.1;Parent=Phyra75367;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 389383 390978 . - . ID=Phyra75368;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000115;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 389383 390978 . - . ID=Phyra75368;Parent=Phyra75368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 389383 390978 . - 0 ID=Phyra75368;Parent=Phyra75368;rank=1 scaffold_12 . exon 389383 390978 . - . ID=Phyra75368.1;Parent=Phyra75368;constitutive=1;rank=1 scaffold_12 . biological_region 399244 399248 0.999 + . logic_name=eponine scaffold_12 ensembl rRNA_gene 398292 398393 . - . ID=EPrPRAG00000000079;biotype=rRNA;description=8s_rRNA [Source:RNAMMER%3BAcc:8s_rRNA];external_name=8s_rRNA;logic_name=ncrna_eg scaffold_12 ensembl rRNA 398292 398393 . - . ID=EPrPRAT00000000079;Parent=EPrPRAG00000000079;biotype=rRNA;logic_name=ncrna_eg scaffold_12 . exon 398292 398393 . - . ID=EPrPRAE00000000079;Parent=EPrPRAT00000000079;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 391947 397517 . - . ID=Phyra75369;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000116;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 391947 397517 . - . ID=Phyra75369;Parent=Phyra75369;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 391947 393899 . - 0 ID=Phyra75369;Parent=Phyra75369;rank=4 scaffold_12 . exon 391947 393899 . - . ID=Phyra75369.4;Parent=Phyra75369;constitutive=1;rank=4 scaffold_12 . CDS 393986 395285 . - 0 ID=Phyra75369;Parent=Phyra75369;rank=3 scaffold_12 . exon 393986 395285 . - . ID=Phyra75369.3;Parent=Phyra75369;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 395445 395500 . - 0 ID=Phyra75369;Parent=Phyra75369;rank=2 scaffold_12 . exon 395445 395500 . - . ID=Phyra75369.2;Parent=Phyra75369;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_12 . CDS 395709 397517 . - 0 ID=Phyra75369;Parent=Phyra75369;rank=1 scaffold_12 . exon 395709 397517 . - . ID=Phyra75369.1;Parent=Phyra75369;constitutive=1;rank=1 scaffold_12 . repeat_region 403766 403778 . ? . description=dust scaffold_12 . repeat_region 404569 404594 . ? . description=dust scaffold_12 ensembl protein_coding_gene 400034 402639 . + . ID=Phyra75370;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000117;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 400034 402639 . + . ID=Phyra75370;Parent=Phyra75370;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 400034 400111 . + 0 ID=Phyra75370;Parent=Phyra75370;rank=1 scaffold_12 . exon 400034 400111 . + . ID=Phyra75370.1;Parent=Phyra75370;constitutive=1;rank=1 scaffold_12 . CDS 400187 400499 . + 0 ID=Phyra75370;Parent=Phyra75370;rank=2 scaffold_12 . exon 400187 400499 . + . ID=Phyra75370.2;Parent=Phyra75370;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 400824 402520 . + 0 ID=Phyra75370;Parent=Phyra75370;rank=3 scaffold_12 . exon 400824 402520 . + . ID=Phyra75370.3;Parent=Phyra75370;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 402592 402639 . + 0 ID=Phyra75370;Parent=Phyra75370;rank=4 scaffold_12 . exon 402592 402639 . + . ID=Phyra75370.4;Parent=Phyra75370;constitutive=1;rank=4 scaffold_12 ensembl protein_coding_gene 404137 405946 . - . ID=Phyra75371;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000118;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 404137 405946 . - . ID=Phyra75371;Parent=Phyra75371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 404137 404147 . - 0 ID=Phyra75371;Parent=Phyra75371;rank=7 scaffold_12 . exon 404137 404147 . - . ID=Phyra75371.7;Parent=Phyra75371;constitutive=1;ensembl_phase=1;rank=7 scaffold_12 . CDS 404257 404270 . - 0 ID=Phyra75371;Parent=Phyra75371;rank=6 scaffold_12 . exon 404257 404270 . - . ID=Phyra75371.6;Parent=Phyra75371;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_12 . CDS 404330 404511 . - 0 ID=Phyra75371;Parent=Phyra75371;rank=5 scaffold_12 . exon 404330 404511 . - . ID=Phyra75371.5;Parent=Phyra75371;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_12 . CDS 404609 404736 . - 0 ID=Phyra75371;Parent=Phyra75371;rank=4 scaffold_12 . exon 404609 404736 . - . ID=Phyra75371.4;Parent=Phyra75371;constitutive=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 404773 404970 . - 0 ID=Phyra75371;Parent=Phyra75371;rank=3 scaffold_12 . exon 404773 404970 . - . ID=Phyra75371.3;Parent=Phyra75371;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 404995 405012 . - 0 ID=Phyra75371;Parent=Phyra75371;rank=2 scaffold_12 . exon 404995 405012 . - . ID=Phyra75371.2;Parent=Phyra75371;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 405067 405946 . - 0 ID=Phyra75371;Parent=Phyra75371;rank=1 scaffold_12 . exon 405067 405946 . - . ID=Phyra75371.1;Parent=Phyra75371;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . repeat_region 412024 412043 . ? . description=trf scaffold_12 . biological_region 414596 414601 0.999 + . logic_name=eponine scaffold_12 . biological_region 415475 415475 0.999 + . logic_name=eponine scaffold_12 . biological_region 415576 415579 0.999 + . logic_name=eponine scaffold_12 . biological_region 416194 416198 0.999 - . logic_name=eponine scaffold_12 . repeat_region 416551 416610 . ? . description=trf scaffold_12 . repeat_region 416880 416916 . ? . description=trf scaffold_12 . biological_region 417318 417320 0.999 + . logic_name=eponine scaffold_12 . biological_region 417700 417705 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 413084 413845 . + . ID=Phyra71301;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_12000010;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 413084 413845 . + . ID=Phyra71301;Parent=Phyra71301;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 413084 413845 . + 0 ID=Phyra71301;Parent=Phyra71301;rank=1 scaffold_12 . exon 413084 413845 . + . ID=Phyra71301.1;Parent=Phyra71301;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 411139 412748 . - . ID=Phyra75372;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000119;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 411139 412748 . - . ID=Phyra75372;Parent=Phyra75372;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 411139 411149 . - 0 ID=Phyra75372;Parent=Phyra75372;rank=3 scaffold_12 . exon 411139 411149 . - . ID=Phyra75372.3;Parent=Phyra75372;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 411212 412340 . - 0 ID=Phyra75372;Parent=Phyra75372;rank=2 scaffold_12 . exon 411212 412340 . - . ID=Phyra75372.2;Parent=Phyra75372;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 412518 412748 . - 0 ID=Phyra75372;Parent=Phyra75372;rank=1 scaffold_12 . exon 412518 412748 . - . ID=Phyra75372.1;Parent=Phyra75372;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 414009 414729 . - . ID=Phyra75374;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000121;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 414009 414729 . - . ID=Phyra75374;Parent=Phyra75374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 414009 414729 . - 0 ID=Phyra75374;Parent=Phyra75374;rank=1 scaffold_12 . exon 414009 414729 . - . ID=Phyra75374.1;Parent=Phyra75374;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 414959 416653 . - . ID=Phyra75375;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000122;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 414959 416653 . - . ID=Phyra75375;Parent=Phyra75375;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 414959 416653 . - 0 ID=Phyra75375;Parent=Phyra75375;rank=1 scaffold_12 . exon 414959 416653 . - . ID=Phyra75375.1;Parent=Phyra75375;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 417732 420287 . - . ID=Phyra75377;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000124;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 417732 420287 . - . ID=Phyra75377;Parent=Phyra75377;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 417732 420287 . - 0 ID=Phyra75377;Parent=Phyra75377;rank=1 scaffold_12 . exon 417732 420287 . - . ID=Phyra75377.1;Parent=Phyra75377;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 416916 417419 . + . ID=Phyra94137;biotype=protein_coding;external_name=C_scaffold_12000051;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 416916 417419 . + . ID=Phyra94137;Parent=Phyra94137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 416916 417419 . + 0 ID=Phyra94137;Parent=Phyra94137;rank=1 scaffold_12 . exon 416916 417419 . + . ID=Phyra94137.1;Parent=Phyra94137;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 422149 423609 . - . ID=Phyra75378;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000125;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 422149 423609 . - . ID=Phyra75378;Parent=Phyra75378;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 422149 423609 . - 0 ID=Phyra75378;Parent=Phyra75378;rank=1 scaffold_12 . exon 422149 423609 . - . ID=Phyra75378.1;Parent=Phyra75378;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 424167 424928 . - . ID=Phyra75379;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000126;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 424167 424928 . - . ID=Phyra75379;Parent=Phyra75379;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 424167 424928 . - 0 ID=Phyra75379;Parent=Phyra75379;rank=1 scaffold_12 . exon 424167 424928 . - . ID=Phyra75379.1;Parent=Phyra75379;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 426266 426622 . + . ID=Phyra75380;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000127;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 426266 426622 . + . ID=Phyra75380;Parent=Phyra75380;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 426266 426622 . + 0 ID=Phyra75380;Parent=Phyra75380;rank=1 scaffold_12 . exon 426266 426622 . + . ID=Phyra75380.1;Parent=Phyra75380;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 426742 428442 . - . ID=Phyra75381;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000128;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 426742 428442 . - . ID=Phyra75381;Parent=Phyra75381;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 426742 428442 . - 0 ID=Phyra75381;Parent=Phyra75381;rank=1 scaffold_12 . exon 426742 428442 . - . ID=Phyra75381.1;Parent=Phyra75381;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 429201 432020 . - . ID=Phyra75382;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000129;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 429201 432020 . - . ID=Phyra75382;Parent=Phyra75382;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 429201 432020 . - 0 ID=Phyra75382;Parent=Phyra75382;rank=1 scaffold_12 . exon 429201 432020 . - . ID=Phyra75382.1;Parent=Phyra75382;constitutive=1;rank=1 scaffold_12 . biological_region 429810 429813 0.999 - . logic_name=eponine scaffold_12 . biological_region 431315 431315 0.999 + . logic_name=eponine scaffold_12 . biological_region 435235 435241 0.999 - . logic_name=eponine scaffold_12 . biological_region 437598 437600 0.999 - . logic_name=eponine scaffold_12 . biological_region 437637 437638 0.999 + . logic_name=eponine scaffold_12 . biological_region 437793 437798 0.999 + . logic_name=eponine scaffold_12 . biological_region 437872 437877 0.999 + . logic_name=eponine scaffold_12 . biological_region 437878 437880 0.999 - . logic_name=eponine scaffold_12 . repeat_region 438038 438089 . ? . description=trf scaffold_12 . biological_region 438326 438329 0.999 - . logic_name=eponine scaffold_12 . repeat_region 439302 439331 . ? . description=trf scaffold_12 ensembl protein_coding_gene 432513 433341 . + . ID=Phyra75383;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000130;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 432513 433341 . + . ID=Phyra75383;Parent=Phyra75383;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 432513 432692 . + 0 ID=Phyra75383;Parent=Phyra75383;rank=1 scaffold_12 . exon 432513 432692 . + . ID=Phyra75383.1;Parent=Phyra75383;constitutive=1;rank=1 scaffold_12 . CDS 432763 433341 . + 0 ID=Phyra75383;Parent=Phyra75383;rank=2 scaffold_12 . exon 432763 433341 . + . ID=Phyra75383.2;Parent=Phyra75383;constitutive=1;rank=2 scaffold_12 ensembl protein_coding_gene 435039 437054 . + . ID=Phyra75384;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000131;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 435039 437054 . + . ID=Phyra75384;Parent=Phyra75384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 435039 437054 . + 0 ID=Phyra75384;Parent=Phyra75384;rank=1 scaffold_12 . exon 435039 437054 . + . ID=Phyra75384.1;Parent=Phyra75384;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 437340 438521 . - . ID=Phyra75385;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000132;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 437340 438521 . - . ID=Phyra75385;Parent=Phyra75385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 437340 438379 . - 0 ID=Phyra75385;Parent=Phyra75385;rank=2 scaffold_12 . exon 437340 438379 . - . ID=Phyra75385.2;Parent=Phyra75385;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 438479 438521 . - 0 ID=Phyra75385;Parent=Phyra75385;rank=1 scaffold_12 . exon 438479 438521 . - . ID=Phyra75385.1;Parent=Phyra75385;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . repeat_region 447804 447853 . ? . description=dust scaffold_12 ensembl protein_coding_gene 444916 445160 . + . ID=Phyra71302;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_12000011;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 444916 445160 . + . ID=Phyra71302;Parent=Phyra71302;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 444916 445040 . + 0 ID=Phyra71302;Parent=Phyra71302;rank=1 scaffold_12 . exon 444916 445040 . + . ID=Phyra71302.1;Parent=Phyra71302;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 445112 445160 . + 0 ID=Phyra71302;Parent=Phyra71302;rank=2 scaffold_12 . exon 445112 445160 . + . ID=Phyra71302.2;Parent=Phyra71302;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 ensembl protein_coding_gene 448119 448985 . + . ID=Phyra71303;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_12000012;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 448119 448985 . + . ID=Phyra71303;Parent=Phyra71303;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 448119 448985 . + 0 ID=Phyra71303;Parent=Phyra71303;rank=1 scaffold_12 . exon 448119 448985 . + . ID=Phyra71303.1;Parent=Phyra71303;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 449078 449506 . - . ID=Phyra71304;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_12000013;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 449078 449506 . - . ID=Phyra71304;Parent=Phyra71304;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 449078 449506 . - 0 ID=Phyra71304;Parent=Phyra71304;rank=1 scaffold_12 . exon 449078 449506 . - . ID=Phyra71304.1;Parent=Phyra71304;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 441826 443979 . + . ID=Phyra75387;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000134;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 441826 443979 . + . ID=Phyra75387;Parent=Phyra75387;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 441826 442661 . + 0 ID=Phyra75387;Parent=Phyra75387;rank=1 scaffold_12 . exon 441826 442661 . + . ID=Phyra75387.1;Parent=Phyra75387;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 443085 443979 . + 0 ID=Phyra75387;Parent=Phyra75387;rank=2 scaffold_12 . exon 443085 443979 . + . ID=Phyra75387.2;Parent=Phyra75387;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 ensembl protein_coding_gene 445978 447531 . - . ID=Phyra75389;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000136;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 445978 447531 . - . ID=Phyra75389;Parent=Phyra75389;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 445978 447531 . - 0 ID=Phyra75389;Parent=Phyra75389;rank=1 scaffold_12 . exon 445978 447531 . - . ID=Phyra75389.1;Parent=Phyra75389;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 439992 441698 . + . ID=Phyra94140;biotype=protein_coding;external_name=C_scaffold_12000054;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 439992 441698 . + . ID=Phyra94140;Parent=Phyra94140;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 439992 440708 . + 0 ID=Phyra94140;Parent=Phyra94140;rank=1 scaffold_12 . exon 439992 440708 . + . ID=Phyra94140.1;Parent=Phyra94140;constitutive=1;rank=1 scaffold_12 . CDS 440730 440786 . + 0 ID=Phyra94140;Parent=Phyra94140;rank=2 scaffold_12 . exon 440730 440786 . + . ID=Phyra94140.2;Parent=Phyra94140;constitutive=1;rank=2 scaffold_12 . CDS 440931 441698 . + 0 ID=Phyra94140;Parent=Phyra94140;rank=3 scaffold_12 . exon 440931 441698 . + . ID=Phyra94140.3;Parent=Phyra94140;constitutive=1;rank=3 scaffold_12 ensembl protein_coding_gene 445592 445785 . + . ID=Phyra94145;biotype=protein_coding;external_name=C_scaffold_12000059;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 445592 445785 . + . ID=Phyra94145;Parent=Phyra94145;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 445592 445785 . + 0 ID=Phyra94145;Parent=Phyra94145;rank=1 scaffold_12 . exon 445592 445785 . + . ID=Phyra94145.1;Parent=Phyra94145;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . biological_region 450466 450471 0.999 + . logic_name=eponine scaffold_12 . biological_region 450494 450499 0.999 - . logic_name=eponine scaffold_12 . biological_region 450559 450559 0.999 - . logic_name=eponine scaffold_12 . biological_region 450704 450704 0.999 - . logic_name=eponine scaffold_12 . repeat_region 452233 452263 . ? . description=trf scaffold_12 . biological_region 452667 452672 0.999 + . logic_name=eponine scaffold_12 . biological_region 456873 456877 0.999 + . logic_name=eponine scaffold_12 . biological_region 456901 456902 0.999 - . logic_name=eponine scaffold_12 . biological_region 456945 456951 0.999 - . logic_name=eponine scaffold_12 . biological_region 459452 459455 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 450340 451980 . + . ID=Phyra75392;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000139;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 450340 451980 . + . ID=Phyra75392;Parent=Phyra75392;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 450340 451980 . + 0 ID=Phyra75392;Parent=Phyra75392;rank=1 scaffold_12 . exon 450340 451980 . + . ID=Phyra75392.1;Parent=Phyra75392;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 452864 455138 . + . ID=Phyra75393;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000140;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 452864 455138 . + . ID=Phyra75393;Parent=Phyra75393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 452864 453077 . + 0 ID=Phyra75393;Parent=Phyra75393;rank=1 scaffold_12 . exon 452864 453077 . + . ID=Phyra75393.1;Parent=Phyra75393;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 453136 455138 . + 0 ID=Phyra75393;Parent=Phyra75393;rank=2 scaffold_12 . exon 453136 455138 . + . ID=Phyra75393.2;Parent=Phyra75393;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 ensembl protein_coding_gene 455513 457119 . - . ID=Phyra75394;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000141;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 455513 457119 . - . ID=Phyra75394;Parent=Phyra75394;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 455513 456883 . - 0 ID=Phyra75394;Parent=Phyra75394;rank=2 scaffold_12 . exon 455513 456883 . - . ID=Phyra75394.2;Parent=Phyra75394;constitutive=1;rank=2 scaffold_12 . CDS 456991 457119 . - 0 ID=Phyra75394;Parent=Phyra75394;rank=1 scaffold_12 . exon 456991 457119 . - . ID=Phyra75394.1;Parent=Phyra75394;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 458257 459786 . + . ID=Phyra75395;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000142;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 458257 459786 . + . ID=Phyra75395;Parent=Phyra75395;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 458257 459786 . + 0 ID=Phyra75395;Parent=Phyra75395;rank=1 scaffold_12 . exon 458257 459786 . + . ID=Phyra75395.1;Parent=Phyra75395;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 459996 461180 . - . ID=Phyra71305;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_12000014;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 459996 461180 . - . ID=Phyra71305;Parent=Phyra71305;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 459996 461180 . - 0 ID=Phyra71305;Parent=Phyra71305;rank=1 scaffold_12 . exon 459996 461180 . - . ID=Phyra71305.1;Parent=Phyra71305;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 461956 463790 . - . ID=Phyra75397;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000144;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 461956 463790 . - . ID=Phyra75397;Parent=Phyra75397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 461956 462967 . - 0 ID=Phyra75397;Parent=Phyra75397;rank=2 scaffold_12 . exon 461956 462967 . - . ID=Phyra75397.2;Parent=Phyra75397;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 463003 463790 . - 0 ID=Phyra75397;Parent=Phyra75397;rank=1 scaffold_12 . exon 463003 463790 . - . ID=Phyra75397.1;Parent=Phyra75397;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 464590 466746 . + . ID=Phyra75398;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000145;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 464590 466746 . + . ID=Phyra75398;Parent=Phyra75398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 464590 464674 . + 0 ID=Phyra75398;Parent=Phyra75398;rank=1 scaffold_12 . exon 464590 464674 . + . ID=Phyra75398.1;Parent=Phyra75398;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 464707 465676 . + 0 ID=Phyra75398;Parent=Phyra75398;rank=2 scaffold_12 . exon 464707 465676 . + . ID=Phyra75398.2;Parent=Phyra75398;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 465711 466746 . + 0 ID=Phyra75398;Parent=Phyra75398;rank=3 scaffold_12 . exon 465711 466746 . + . ID=Phyra75398.3;Parent=Phyra75398;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 ensembl protein_coding_gene 467599 469588 . - . ID=Phyra75399;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000146;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 467599 469588 . - . ID=Phyra75399;Parent=Phyra75399;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 467599 468492 . - 0 ID=Phyra75399;Parent=Phyra75399;rank=2 scaffold_12 . exon 467599 468492 . - . ID=Phyra75399.2;Parent=Phyra75399;constitutive=1;rank=2 scaffold_12 . CDS 468548 469588 . - 0 ID=Phyra75399;Parent=Phyra75399;rank=1 scaffold_12 . exon 468548 469588 . - . ID=Phyra75399.1;Parent=Phyra75399;constitutive=1;rank=1 scaffold_12 . biological_region 469783 469788 0.999 - . logic_name=eponine scaffold_12 . biological_region 473192 473194 0.999 - . logic_name=eponine scaffold_12 . biological_region 478412 478415 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 470198 472111 . - . ID=Phyra75400;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000147;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 470198 472111 . - . ID=Phyra75400;Parent=Phyra75400;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 470198 472111 . - 0 ID=Phyra75400;Parent=Phyra75400;rank=1 scaffold_12 . exon 470198 472111 . - . ID=Phyra75400.1;Parent=Phyra75400;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 472744 473343 . - . ID=Phyra75401;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000148;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 472744 473343 . - . ID=Phyra75401;Parent=Phyra75401;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 472744 473343 . - 0 ID=Phyra75401;Parent=Phyra75401;rank=1 scaffold_12 . exon 472744 473343 . - . ID=Phyra75401.1;Parent=Phyra75401;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 478307 481055 . - . ID=Phyra75402;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000149;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 478307 481055 . - . ID=Phyra75402;Parent=Phyra75402;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 478307 480510 . - 0 ID=Phyra75402;Parent=Phyra75402;rank=2 scaffold_12 . exon 478307 480510 . - . ID=Phyra75402.2;Parent=Phyra75402;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 480581 481055 . - 0 ID=Phyra75402;Parent=Phyra75402;rank=1 scaffold_12 . repeat_region 484865 484920 . ? . description=trf scaffold_12 . exon 480581 481055 . - . ID=Phyra75402.1;Parent=Phyra75402;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 486771 489516 . - . ID=Phyra94146;biotype=protein_coding;external_name=C_scaffold_12000060;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 486771 489516 . - . ID=Phyra94146;Parent=Phyra94146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 486771 486776 . - 0 ID=Phyra94146;Parent=Phyra94146;rank=7 scaffold_12 . exon 486771 486776 . - . ID=Phyra94146.7;Parent=Phyra94146;constitutive=1;rank=7 scaffold_12 . CDS 487021 487201 . - 0 ID=Phyra94146;Parent=Phyra94146;rank=6 scaffold_12 . exon 487021 487201 . - . ID=Phyra94146.6;Parent=Phyra94146;constitutive=1;ensembl_phase=2;rank=6 scaffold_12 . CDS 487346 487478 . - 0 ID=Phyra94146;Parent=Phyra94146;rank=5 scaffold_12 . exon 487346 487478 . - . ID=Phyra94146.5;Parent=Phyra94146;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_12 . CDS 487626 488158 . - 0 ID=Phyra94146;Parent=Phyra94146;rank=4 scaffold_12 . exon 487626 488158 . - . ID=Phyra94146.4;Parent=Phyra94146;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_12 . CDS 488413 488459 . - 0 ID=Phyra94146;Parent=Phyra94146;rank=3 scaffold_12 . exon 488413 488459 . - . ID=Phyra94146.3;Parent=Phyra94146;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_12 . CDS 488587 488880 . - 0 ID=Phyra94146;Parent=Phyra94146;rank=2 scaffold_12 . exon 488587 488880 . - . ID=Phyra94146.2;Parent=Phyra94146;constitutive=1;rank=2 scaffold_12 . CDS 488905 489516 . - 0 ID=Phyra94146;Parent=Phyra94146;rank=1 scaffold_12 . exon 488905 489516 . - . ID=Phyra94146.1;Parent=Phyra94146;constitutive=1;rank=1 scaffold_12 . biological_region 493684 493688 0.999 - . logic_name=eponine scaffold_12 . biological_region 494156 494159 0.999 + . logic_name=eponine scaffold_12 . repeat_region 494775 495186 . ? . description=dust scaffold_12 . repeat_region 497800 497814 . ? . description=dust scaffold_12 ensembl protein_coding_gene 491119 493115 . - . ID=Phyra75404;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000151;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 491119 493115 . - . ID=Phyra75404;Parent=Phyra75404;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 491119 492807 . - 0 ID=Phyra75404;Parent=Phyra75404;rank=3 scaffold_12 . exon 491119 492807 . - . ID=Phyra75404.3;Parent=Phyra75404;constitutive=1;rank=3 scaffold_12 . CDS 492869 492898 . - 0 ID=Phyra75404;Parent=Phyra75404;rank=2 scaffold_12 . exon 492869 492898 . - . ID=Phyra75404.2;Parent=Phyra75404;constitutive=1;rank=2 scaffold_12 . CDS 493053 493115 . - 0 ID=Phyra75404;Parent=Phyra75404;rank=1 scaffold_12 . exon 493053 493115 . - . ID=Phyra75404.1;Parent=Phyra75404;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 493576 495487 . + . ID=Phyra75405;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000152;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 493576 495487 . + . ID=Phyra75405;Parent=Phyra75405;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 493576 493773 . + 0 ID=Phyra75405;Parent=Phyra75405;rank=1 scaffold_12 . exon 493576 493773 . + . ID=Phyra75405.1;Parent=Phyra75405;constitutive=1;rank=1 scaffold_12 . CDS 493913 494770 . + 0 ID=Phyra75405;Parent=Phyra75405;rank=2 scaffold_12 . exon 493913 494770 . + . ID=Phyra75405.2;Parent=Phyra75405;constitutive=1;rank=2 scaffold_12 . CDS 495362 495487 . + 0 ID=Phyra75405;Parent=Phyra75405;rank=3 scaffold_12 . exon 495362 495487 . + . ID=Phyra75405.3;Parent=Phyra75405;constitutive=1;rank=3 scaffold_12 ensembl protein_coding_gene 498863 499204 . + . ID=Phyra75406;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000153;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 498863 499204 . + . ID=Phyra75406;Parent=Phyra75406;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 498863 499204 . + 0 ID=Phyra75406;Parent=Phyra75406;rank=1 scaffold_12 . exon 498863 499204 . + . ID=Phyra75406.1;Parent=Phyra75406;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 499550 501154 . + . ID=Phyra75407;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000154;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 499550 501154 . + . ID=Phyra75407;Parent=Phyra75407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 499550 499645 . + 0 ID=Phyra75407;Parent=Phyra75407;rank=1 scaffold_12 . exon 499550 499645 . + . ID=Phyra75407.1;Parent=Phyra75407;constitutive=1;rank=1 scaffold_12 . CDS 500014 500110 . + 0 ID=Phyra75407;Parent=Phyra75407;rank=2 scaffold_12 . exon 500014 500110 . + . ID=Phyra75407.2;Parent=Phyra75407;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 500676 500773 . + 0 ID=Phyra75407;Parent=Phyra75407;rank=3 scaffold_12 . exon 500676 500773 . + . ID=Phyra75407.3;Parent=Phyra75407;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 500867 501154 . + 0 ID=Phyra75407;Parent=Phyra75407;rank=4 scaffold_12 . exon 500867 501154 . + . ID=Phyra75407.4;Parent=Phyra75407;constitutive=1;rank=4 scaffold_12 ensembl protein_coding_gene 507212 508225 . + . ID=Phyra75408;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000155;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 507212 508225 . + . ID=Phyra75408;Parent=Phyra75408;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 507212 508225 . + 0 ID=Phyra75408;Parent=Phyra75408;rank=1 scaffold_12 . exon 507212 508225 . + . ID=Phyra75408.1;Parent=Phyra75408;constitutive=1;rank=1 scaffold_12 . repeat_region 512766 512773 . ? . description=dust scaffold_12 . repeat_region 517338 517346 . ? . description=dust scaffold_12 . repeat_region 517574 517592 . ? . description=dust scaffold_12 . repeat_region 519120 519169 . ? . description=dust scaffold_12 ensembl protein_coding_gene 516154 517038 . - . ID=Phyra75409;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000156;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 516154 517038 . - . ID=Phyra75409;Parent=Phyra75409;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 516154 517038 . - 0 ID=Phyra75409;Parent=Phyra75409;rank=1 scaffold_12 . exon 516154 517038 . - . ID=Phyra75409.1;Parent=Phyra75409;constitutive=1;rank=1 scaffold_12 . biological_region 519882 519885 0.999 - . logic_name=eponine scaffold_12 . biological_region 525881 525883 0.999 + . logic_name=eponine scaffold_12 . biological_region 525925 525927 0.999 + . logic_name=eponine scaffold_12 . biological_region 525971 525973 0.999 - . logic_name=eponine scaffold_12 . biological_region 525993 525998 0.999 - . logic_name=eponine scaffold_12 . biological_region 526049 526051 0.999 + . logic_name=eponine scaffold_12 . biological_region 526057 526063 0.999 - . logic_name=eponine scaffold_12 . biological_region 526099 526102 0.999 + . logic_name=eponine scaffold_12 . biological_region 526178 526179 0.999 + . logic_name=eponine scaffold_12 . biological_region 527659 527665 0.999 + . logic_name=eponine scaffold_12 . biological_region 527724 527729 0.999 + . logic_name=eponine scaffold_12 . biological_region 527749 527751 0.999 + . logic_name=eponine scaffold_12 . biological_region 527795 527797 0.999 - . logic_name=eponine scaffold_12 . biological_region 527839 527841 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 527455 528729 . + . ID=Phyra40437;biotype=protein_coding;external_name=gwEuk.12.66.1;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 527455 528729 . + . ID=Phyra40437;Parent=Phyra40437;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 527455 528729 . + 0 ID=Phyra40437;Parent=Phyra40437;rank=1 scaffold_12 . exon 527455 528729 . + . ID=Phyra40437.1;Parent=Phyra40437;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 524989 526266 . - . ID=Phyra71306;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_12000015;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 524989 526266 . - . ID=Phyra71306;Parent=Phyra71306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 524989 526266 . - 0 ID=Phyra71306;Parent=Phyra71306;rank=1 scaffold_12 . exon 524989 526266 . - . ID=Phyra71306.1;Parent=Phyra71306;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 519552 520667 . - . ID=Phyra75410;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000157;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 519552 520667 . - . ID=Phyra75410;Parent=Phyra75410;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 519552 520667 . - 0 ID=Phyra75410;Parent=Phyra75410;rank=1 scaffold_12 . exon 519552 520667 . - . ID=Phyra75410.1;Parent=Phyra75410;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 523704 524732 . - . ID=Phyra75411;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000158;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 523704 524732 . - . ID=Phyra75411;Parent=Phyra75411;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 523704 524732 . - 0 ID=Phyra75411;Parent=Phyra75411;rank=1 scaffold_12 . exon 523704 524732 . - . ID=Phyra75411.1;Parent=Phyra75411;constitutive=1;rank=1 scaffold_12 . repeat_region 534535 534544 . ? . description=dust scaffold_12 . repeat_region 534826 534849 . ? . description=dust scaffold_12 . repeat_region 536917 536930 . ? . description=dust scaffold_12 ensembl protein_coding_gene 533046 534161 . + . ID=Phyra75414;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000161;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 533046 534161 . + . ID=Phyra75414;Parent=Phyra75414;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 533046 534161 . + 0 ID=Phyra75414;Parent=Phyra75414;rank=1 scaffold_12 . exon 533046 534161 . + . ID=Phyra75414.1;Parent=Phyra75414;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 536951 538114 . + . ID=Phyra75415;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000162;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 536951 538114 . + . ID=Phyra75415;Parent=Phyra75415;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 536951 538114 . + 0 ID=Phyra75415;Parent=Phyra75415;rank=1 scaffold_12 . exon 536951 538114 . + . ID=Phyra75415.1;Parent=Phyra75415;constitutive=1;rank=1 scaffold_12 . repeat_region 547185 547205 . ? . description=trf scaffold_12 . repeat_region 550191 550200 . ? . description=dust scaffold_12 . biological_region 556420 556424 0.999 - . logic_name=eponine scaffold_12 . biological_region 556667 556669 0.999 + . logic_name=eponine scaffold_12 . biological_region 557726 557726 0.999 - . logic_name=eponine scaffold_12 . repeat_region 558286 558335 . ? . description=dust scaffold_12 ensembl protein_coding_gene 550571 556859 . + . ID=Phyra75416;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000163;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 550571 556859 . + . ID=Phyra75416;Parent=Phyra75416;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 550571 551457 . + 0 ID=Phyra75416;Parent=Phyra75416;rank=1 scaffold_12 . exon 550571 551457 . + . ID=Phyra75416.1;Parent=Phyra75416;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 551556 552459 . + 0 ID=Phyra75416;Parent=Phyra75416;rank=2 scaffold_12 . exon 551556 552459 . + . ID=Phyra75416.2;Parent=Phyra75416;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 552664 552785 . + 0 ID=Phyra75416;Parent=Phyra75416;rank=3 scaffold_12 . exon 552664 552785 . + . ID=Phyra75416.3;Parent=Phyra75416;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_12 . CDS 552874 553170 . + 0 ID=Phyra75416;Parent=Phyra75416;rank=4 scaffold_12 . exon 552874 553170 . + . ID=Phyra75416.4;Parent=Phyra75416;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_12 . CDS 553357 554170 . + 0 ID=Phyra75416;Parent=Phyra75416;rank=5 scaffold_12 . exon 553357 554170 . + . ID=Phyra75416.5;Parent=Phyra75416;constitutive=1;ensembl_phase=2;rank=5 scaffold_12 . CDS 554301 556859 . + 0 ID=Phyra75416;Parent=Phyra75416;rank=6 scaffold_12 . exon 554301 556859 . + . ID=Phyra75416.6;Parent=Phyra75416;constitutive=1;rank=6 scaffold_12 ensembl protein_coding_gene 562260 563086 . - . ID=Phyra75417;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000164;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 562260 563086 . - . ID=Phyra75417;Parent=Phyra75417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 562260 562883 . - 0 ID=Phyra75417;Parent=Phyra75417;rank=2 scaffold_12 . exon 562260 562883 . - . ID=Phyra75417.2;Parent=Phyra75417;constitutive=1;rank=2 scaffold_12 . CDS 563024 563086 . - 0 ID=Phyra75417;Parent=Phyra75417;rank=1 scaffold_12 . exon 563024 563086 . - . ID=Phyra75417.1;Parent=Phyra75417;constitutive=1;rank=1 scaffold_12 . repeat_region 564733 570883 . ? . description=dust scaffold_12 . repeat_region 572098 572106 . ? . description=dust scaffold_12 . biological_region 573021 573025 0.999 + . logic_name=eponine scaffold_12 . repeat_region 573340 573389 . ? . description=dust scaffold_12 . repeat_region 575151 575200 . ? . description=dust scaffold_12 . biological_region 577187 577191 0.999 - . logic_name=eponine scaffold_12 . biological_region 577373 577375 0.999 - . logic_name=eponine scaffold_12 . repeat_region 577491 577540 . ? . description=dust scaffold_12 ensembl protein_coding_gene 572229 573291 . + . ID=Phyra75418;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000165;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 572229 573291 . + . ID=Phyra75418;Parent=Phyra75418;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 572229 573210 . + 0 ID=Phyra75418;Parent=Phyra75418;rank=1 scaffold_12 . exon 572229 573210 . + . ID=Phyra75418.1;Parent=Phyra75418;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 573254 573291 . + 0 ID=Phyra75418;Parent=Phyra75418;rank=2 scaffold_12 . exon 573254 573291 . + . ID=Phyra75418.2;Parent=Phyra75418;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 ensembl protein_coding_gene 573586 576175 . - . ID=Phyra75419;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000166;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 573586 576175 . - . ID=Phyra75419;Parent=Phyra75419;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 573586 573592 . - 0 ID=Phyra75419;Parent=Phyra75419;rank=4 scaffold_12 . exon 573586 573592 . - . ID=Phyra75419.4;Parent=Phyra75419;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 . CDS 573649 575079 . - 0 ID=Phyra75419;Parent=Phyra75419;rank=3 scaffold_12 . exon 573649 575079 . - . ID=Phyra75419.3;Parent=Phyra75419;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_12 . CDS 575205 575418 . - 0 ID=Phyra75419;Parent=Phyra75419;rank=2 scaffold_12 . exon 575205 575418 . - . ID=Phyra75419.2;Parent=Phyra75419;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 575599 576175 . - 0 ID=Phyra75419;Parent=Phyra75419;rank=1 scaffold_12 . exon 575599 576175 . - . ID=Phyra75419.1;Parent=Phyra75419;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . repeat_region 584502 584545 . ? . description=trf scaffold_12 . repeat_region 589821 589828 . ? . description=dust scaffold_12 . repeat_region 591300 591308 . ? . description=dust scaffold_12 . biological_region 592999 593001 0.999 + . logic_name=eponine scaffold_12 . repeat_region 593748 593765 . ? . description=dust scaffold_12 . repeat_region 595289 595296 . ? . description=dust scaffold_12 . biological_region 598576 598577 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 591337 593707 . - . ID=Phyra75420;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000167;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 591337 593707 . - . ID=Phyra75420;Parent=Phyra75420;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 591337 591736 . - 0 ID=Phyra75420;Parent=Phyra75420;rank=3 scaffold_12 . exon 591337 591736 . - . ID=Phyra75420.3;Parent=Phyra75420;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 591837 591985 . - 0 ID=Phyra75420;Parent=Phyra75420;rank=2 scaffold_12 . exon 591837 591985 . - . ID=Phyra75420.2;Parent=Phyra75420;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_12 . CDS 592517 593707 . - 0 ID=Phyra75420;Parent=Phyra75420;rank=1 scaffold_12 . exon 592517 593707 . - . ID=Phyra75420.1;Parent=Phyra75420;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 594542 595808 . - . ID=Phyra75421;biotype=protein_coding;description=Elicitin-like protein RAL2D [Source:UniProtKB/TrEMBL%3BAcc:Q2N0B8];external_name=fgenesh1_pg.C_scaffold_12000168;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 594542 595808 . - . ID=Phyra75421;Parent=Phyra75421;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 594542 595284 . - 0 ID=Phyra75421;Parent=Phyra75421;rank=2 scaffold_12 . exon 594542 595284 . - . ID=Phyra75421.2;Parent=Phyra75421;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 595505 595808 . - 0 ID=Phyra75421;Parent=Phyra75421;rank=1 scaffold_12 . exon 595505 595808 . - . ID=Phyra75421.1;Parent=Phyra75421;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 597431 597934 . - . ID=Phyra75422;biotype=protein_coding;description=Elicitin-like protein RAL2B [Source:UniProtKB/TrEMBL%3BAcc:Q2N0C0];external_name=fgenesh1_pg.C_scaffold_12000169;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 597431 597934 . - . ID=Phyra75422;Parent=Phyra75422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 597431 597934 . - 0 ID=Phyra75422;Parent=Phyra75422;rank=1 scaffold_12 . exon 597431 597934 . - . ID=Phyra75422.1;Parent=Phyra75422;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 598556 599038 . - . ID=Phyra75423;biotype=protein_coding;description=Elicitin-like protein RAL2E [Source:UniProtKB/TrEMBL%3BAcc:Q2N0B7];external_name=fgenesh1_pg.C_scaffold_12000170;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 598556 599038 . - . ID=Phyra75423;Parent=Phyra75423;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 598556 599038 . - 0 ID=Phyra75423;Parent=Phyra75423;rank=1 scaffold_12 . exon 598556 599038 . - . ID=Phyra75423.1;Parent=Phyra75423;constitutive=1;rank=1 scaffold_12 . repeat_region 599987 600013 . ? . description=trf scaffold_12 . repeat_region 601020 601292 . ? . description=trf scaffold_12 . repeat_region 601267 601442 . ? . description=trf scaffold_12 . repeat_region 601417 601722 . ? . description=trf scaffold_12 ensembl protein_coding_gene 604907 605620 . - . ID=Phyra71307;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_12000016;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 604907 605620 . - . ID=Phyra71307;Parent=Phyra71307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 604907 605620 . - 0 ID=Phyra71307;Parent=Phyra71307;rank=1 scaffold_12 . exon 604907 605620 . - . ID=Phyra71307.1;Parent=Phyra71307;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 607717 608427 . - . ID=Phyra71308;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_12000017;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 607717 608427 . - . ID=Phyra71308;Parent=Phyra71308;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 607717 608427 . - 0 ID=Phyra71308;Parent=Phyra71308;rank=1 scaffold_12 . exon 607717 608427 . - . ID=Phyra71308.1;Parent=Phyra71308;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 609309 610301 . - . ID=Phyra71309;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_12000018;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 609309 610301 . - . ID=Phyra71309;Parent=Phyra71309;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 609309 610301 . - 0 ID=Phyra71309;Parent=Phyra71309;rank=1 scaffold_12 . exon 609309 610301 . - . ID=Phyra71309.1;Parent=Phyra71309;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 600700 601731 . + . ID=Phyra75424;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000171;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 600700 601731 . + . ID=Phyra75424;Parent=Phyra75424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 600700 601731 . + 0 ID=Phyra75424;Parent=Phyra75424;rank=1 scaffold_12 . exon 600700 601731 . + . ID=Phyra75424.1;Parent=Phyra75424;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 602626 603339 . + . ID=Phyra75425;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000172;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 602626 603339 . + . ID=Phyra75425;Parent=Phyra75425;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 602626 603339 . + 0 ID=Phyra75425;Parent=Phyra75425;rank=1 scaffold_12 . exon 602626 603339 . + . ID=Phyra75425.1;Parent=Phyra75425;constitutive=1;rank=1 scaffold_12 . biological_region 611612 611617 0.999 + . logic_name=eponine scaffold_12 . biological_region 612130 612132 0.999 - . logic_name=eponine scaffold_12 . repeat_region 613161 634182 . ? . description=dust scaffold_12 ensembl protein_coding_gene 611337 612050 . - . ID=Phyra71310;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_12000019;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 611337 612050 . - . ID=Phyra71310;Parent=Phyra71310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 611337 612050 . - 0 ID=Phyra71310;Parent=Phyra71310;rank=1 scaffold_12 . exon 611337 612050 . - . ID=Phyra71310.1;Parent=Phyra71310;constitutive=1;rank=1 scaffold_12 . repeat_region 613161 634182 . ? . description=dust scaffold_12 . biological_region 634292 634296 0.999 - . logic_name=eponine scaffold_12 . repeat_region 634652 634702 . ? . description=dust scaffold_12 . biological_region 634997 634999 0.999 - . logic_name=eponine scaffold_12 . biological_region 635069 635073 0.999 - . logic_name=eponine scaffold_12 . biological_region 635507 635510 0.999 - . logic_name=eponine scaffold_12 . biological_region 635560 635563 0.999 - . logic_name=eponine scaffold_12 . biological_region 635638 635642 0.999 - . logic_name=eponine scaffold_12 . biological_region 635734 635735 0.999 - . logic_name=eponine scaffold_12 . repeat_region 635838 635897 . ? . description=dust scaffold_12 . biological_region 635916 635922 0.999 + . logic_name=eponine scaffold_12 . biological_region 635937 635937 0.999 + . logic_name=eponine scaffold_12 . biological_region 636351 636356 0.999 - . logic_name=eponine scaffold_12 . biological_region 636727 636729 0.999 + . logic_name=eponine scaffold_12 . biological_region 637050 637051 0.999 - . logic_name=eponine scaffold_12 . biological_region 637717 637722 0.999 - . logic_name=eponine scaffold_12 . biological_region 637840 637840 0.999 + . logic_name=eponine scaffold_12 . biological_region 637881 637887 0.999 - . logic_name=eponine scaffold_12 . biological_region 637912 637918 0.999 + . logic_name=eponine scaffold_12 . biological_region 637936 637943 0.999 + . logic_name=eponine scaffold_12 . biological_region 638000 638002 0.999 - . logic_name=eponine scaffold_12 . biological_region 638025 638029 0.999 + . logic_name=eponine scaffold_12 . biological_region 638040 638046 0.999 - . logic_name=eponine scaffold_12 . biological_region 638120 638123 0.999 - . logic_name=eponine scaffold_12 . repeat_region 638347 667941 . ? . description=dust scaffold_12 ensembl protein_coding_gene 634488 638339 . + . ID=Phyra75430;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000177;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 634488 638339 . + . ID=Phyra75430;Parent=Phyra75430;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 634488 636540 . + 0 ID=Phyra75430;Parent=Phyra75430;rank=1 scaffold_12 . exon 634488 636540 . + . ID=Phyra75430.1;Parent=Phyra75430;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 636591 638151 . + 0 ID=Phyra75430;Parent=Phyra75430;rank=2 scaffold_12 . exon 636591 638151 . + . ID=Phyra75430.2;Parent=Phyra75430;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 638198 638339 . + 0 ID=Phyra75430;Parent=Phyra75430;rank=3 scaffold_12 . exon 638198 638339 . + . ID=Phyra75430.3;Parent=Phyra75430;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . repeat_region 638347 667941 . ? . description=dust scaffold_12 . repeat_region 668087 668118 . ? . description=trf scaffold_12 . biological_region 671885 671888 0.999 - . logic_name=eponine scaffold_12 . biological_region 672134 672135 0.999 - . logic_name=eponine scaffold_12 . biological_region 672152 672152 0.999 + . logic_name=eponine scaffold_12 . biological_region 672155 672160 0.999 - . logic_name=eponine scaffold_12 . biological_region 672169 672178 0.999 + . logic_name=eponine scaffold_12 . biological_region 672228 672234 0.999 - . logic_name=eponine scaffold_12 . biological_region 672835 672839 0.999 - . logic_name=eponine scaffold_12 . repeat_region 677038 677045 . ? . description=dust scaffold_12 . repeat_region 678987 678995 . ? . description=dust scaffold_12 ensembl protein_coding_gene 671550 671797 . - . ID=Phyra40475;biotype=protein_coding;external_name=gwEuk.12.104.1;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 671550 671797 . - . ID=Phyra40475;Parent=Phyra40475;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 671550 671609 . - 0 ID=Phyra40475;Parent=Phyra40475;rank=2 scaffold_12 . exon 671550 671609 . - . ID=Phyra40475.2;Parent=Phyra40475;constitutive=1;rank=2 scaffold_12 . CDS 671678 671797 . - 0 ID=Phyra40475;Parent=Phyra40475;rank=1 scaffold_12 . exon 671678 671797 . - . ID=Phyra40475.1;Parent=Phyra40475;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 670688 671418 . + . ID=Phyra75431;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000178;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 670688 671418 . + . ID=Phyra75431;Parent=Phyra75431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 670688 670693 . + 0 ID=Phyra75431;Parent=Phyra75431;rank=1 scaffold_12 . exon 670688 670693 . + . ID=Phyra75431.1;Parent=Phyra75431;constitutive=1;rank=1 scaffold_12 . CDS 670756 671418 . + 0 ID=Phyra75431;Parent=Phyra75431;rank=2 scaffold_12 . exon 670756 671418 . + . ID=Phyra75431.2;Parent=Phyra75431;constitutive=1;rank=2 scaffold_12 ensembl protein_coding_gene 672085 676809 . + . ID=Phyra75432;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000179;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 672085 676809 . + . ID=Phyra75432;Parent=Phyra75432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 672085 674905 . + 0 ID=Phyra75432;Parent=Phyra75432;rank=1 scaffold_12 . exon 672085 674905 . + . ID=Phyra75432.1;Parent=Phyra75432;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 675056 676658 . + 0 ID=Phyra75432;Parent=Phyra75432;rank=2 scaffold_12 . exon 675056 676658 . + . ID=Phyra75432.2;Parent=Phyra75432;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 676734 676809 . + 0 ID=Phyra75432;Parent=Phyra75432;rank=3 scaffold_12 . exon 676734 676809 . + . ID=Phyra75432.3;Parent=Phyra75432;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 ensembl protein_coding_gene 677696 678499 . - . ID=Phyra75433;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000180;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 677696 678499 . - . ID=Phyra75433;Parent=Phyra75433;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 677696 678160 . - 0 ID=Phyra75433;Parent=Phyra75433;rank=2 scaffold_12 . exon 677696 678160 . - . ID=Phyra75433.2;Parent=Phyra75433;constitutive=1;rank=2 scaffold_12 . CDS 678269 678499 . - 0 ID=Phyra75433;Parent=Phyra75433;rank=1 scaffold_12 . exon 678269 678499 . - . ID=Phyra75433.1;Parent=Phyra75433;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 686049 687000 . + . ID=Phyra75434;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_12000181;logic_name=jgi_phyra1 scaffold_12 ensembl transcript 686049 687000 . + . ID=Phyra75434;Parent=Phyra75434;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_12 . CDS 686049 686147 . + 0 ID=Phyra75434;Parent=Phyra75434;rank=1 scaffold_12 . exon 686049 686147 . + . ID=Phyra75434.1;Parent=Phyra75434;constitutive=1;rank=1 scaffold_12 . CDS 686275 687000 . + 0 ID=Phyra75434;Parent=Phyra75434;rank=2 scaffold_12 . exon 686275 687000 . + . ID=Phyra75434.2;Parent=Phyra75434;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_11 1 693269 scaffold_11 . repeat_region 848 897 . ? . description=dust scaffold_11 . repeat_region 3591 3598 . ? . description=dust scaffold_11 . repeat_region 3657 3971 . ? . description=dust scaffold_11 . biological_region 4178 4179 0.999 + . logic_name=eponine scaffold_11 . biological_region 4638 4640 0.999 + . logic_name=eponine scaffold_11 . biological_region 6807 6807 0.999 + . logic_name=eponine scaffold_11 . biological_region 9352 9353 0.999 + . logic_name=eponine scaffold_11 ensembl protein_coding_gene 13 800 . - . ID=Phyra74989;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000001;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 13 800 . - . ID=Phyra74989;Parent=Phyra74989;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 13 236 . - 0 ID=Phyra74989;Parent=Phyra74989;rank=3 scaffold_11 . exon 13 236 . - . ID=Phyra74989.3;Parent=Phyra74989;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 375 487 . - 0 ID=Phyra74989;Parent=Phyra74989;rank=2 scaffold_11 . exon 375 487 . - . ID=Phyra74989.2;Parent=Phyra74989;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 557 800 . - 0 ID=Phyra74989;Parent=Phyra74989;rank=1 scaffold_11 . exon 557 800 . - . ID=Phyra74989.1;Parent=Phyra74989;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 1086 3518 . - . ID=Phyra74990;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000002;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 1086 3518 . - . ID=Phyra74990;Parent=Phyra74990;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 1086 3518 . - 0 ID=Phyra74990;Parent=Phyra74990;rank=1 scaffold_11 . exon 1086 3518 . - . ID=Phyra74990.1;Parent=Phyra74990;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 4432 5510 . - . ID=Phyra74991;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000003;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 4432 5510 . - . ID=Phyra74991;Parent=Phyra74991;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 4432 5238 . - 0 ID=Phyra74991;Parent=Phyra74991;rank=2 scaffold_11 . exon 4432 5238 . - . ID=Phyra74991.2;Parent=Phyra74991;constitutive=1;rank=2 scaffold_11 . CDS 5319 5510 . - 0 ID=Phyra74991;Parent=Phyra74991;rank=1 scaffold_11 . exon 5319 5510 . - . ID=Phyra74991.1;Parent=Phyra74991;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 6094 19139 . + . ID=Phyra74992;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000004;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 6094 19139 . + . ID=Phyra74992;Parent=Phyra74992;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 6094 8346 . + 0 ID=Phyra74992;Parent=Phyra74992;rank=1 scaffold_11 . exon 6094 8346 . + . ID=Phyra74992.1;Parent=Phyra74992;constitutive=1;rank=1 scaffold_11 . CDS 8534 9946 . + 0 ID=Phyra74992;Parent=Phyra74992;rank=2 scaffold_11 . exon 8534 9946 . + . ID=Phyra74992.2;Parent=Phyra74992;constitutive=1;rank=2 scaffold_11 . CDS 10015 10650 . + 0 ID=Phyra74992;Parent=Phyra74992;rank=3 scaffold_11 . CDS 11244 12296 . + 0 ID=Phyra74992;Parent=Phyra74992;rank=4 scaffold_11 . CDS 12362 12460 . + 0 ID=Phyra74992;Parent=Phyra74992;rank=5 scaffold_11 . CDS 12540 12749 . + 0 ID=Phyra74992;Parent=Phyra74992;rank=6 scaffold_11 . CDS 12823 14613 . + 0 ID=Phyra74992;Parent=Phyra74992;rank=7 scaffold_11 . CDS 14857 17787 . + 0 ID=Phyra74992;Parent=Phyra74992;rank=8 scaffold_11 . CDS 17863 18174 . + 0 ID=Phyra74992;Parent=Phyra74992;rank=9 scaffold_11 . CDS 18249 19139 . + 0 ID=Phyra74992;Parent=Phyra74992;rank=10 scaffold_11 . repeat_region 11319 11389 . ? . description=trf scaffold_11 . repeat_region 11353 11396 . ? . description=trf scaffold_11 . repeat_region 11355 11396 . ? . description=trf scaffold_11 . repeat_region 11428 11489 . ? . description=trf scaffold_11 . repeat_region 11445 11495 . ? . description=trf scaffold_11 . repeat_region 11457 11563 . ? . description=trf scaffold_11 . repeat_region 11463 11563 . ? . description=trf scaffold_11 . repeat_region 11481 11563 . ? . description=trf scaffold_11 . repeat_region 11678 11801 . ? . description=trf scaffold_11 . repeat_region 11678 11801 . ? . description=trf scaffold_11 . repeat_region 11694 11794 . ? . description=trf scaffold_11 . repeat_region 11976 12016 . ? . description=trf scaffold_11 . repeat_region 11976 12021 . ? . description=trf scaffold_11 . repeat_region 11979 12013 . ? . description=trf scaffold_11 . exon 10015 10650 . + . ID=Phyra74992.3;Parent=Phyra74992;constitutive=1;rank=3 scaffold_11 . exon 11244 12296 . + . ID=Phyra74992.4;Parent=Phyra74992;constitutive=1;rank=4 scaffold_11 . exon 12362 12460 . + . ID=Phyra74992.5;Parent=Phyra74992;constitutive=1;rank=5 scaffold_11 . exon 12540 12749 . + . ID=Phyra74992.6;Parent=Phyra74992;constitutive=1;rank=6 scaffold_11 . exon 12823 14613 . + . ID=Phyra74992.7;Parent=Phyra74992;constitutive=1;rank=7 scaffold_11 . exon 14857 17787 . + . ID=Phyra74992.8;Parent=Phyra74992;constitutive=1;rank=8 scaffold_11 . exon 17863 18174 . + . ID=Phyra74992.9;Parent=Phyra74992;constitutive=1;rank=9 scaffold_11 . exon 18249 19139 . + . ID=Phyra74992.10;Parent=Phyra74992;constitutive=1;rank=10 scaffold_11 . biological_region 28230 28233 0.999 - . logic_name=eponine scaffold_11 . biological_region 28270 28271 0.999 + . logic_name=eponine scaffold_11 ensembl protein_coding_gene 20075 22354 . + . ID=Phyra74993;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000005;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 20075 22354 . + . ID=Phyra74993;Parent=Phyra74993;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 20075 22354 . + 0 ID=Phyra74993;Parent=Phyra74993;rank=1 scaffold_11 . exon 20075 22354 . + . ID=Phyra74993.1;Parent=Phyra74993;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 22897 23448 . - . ID=Phyra74994;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000006;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 22897 23448 . - . ID=Phyra74994;Parent=Phyra74994;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 22897 23448 . - 0 ID=Phyra74994;Parent=Phyra74994;rank=1 scaffold_11 . exon 22897 23448 . - . ID=Phyra74994.1;Parent=Phyra74994;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 23922 27542 . + . ID=Phyra74995;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000007;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 23922 27542 . + . ID=Phyra74995;Parent=Phyra74995;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 23922 24726 . + 0 ID=Phyra74995;Parent=Phyra74995;rank=1 scaffold_11 . exon 23922 24726 . + . ID=Phyra74995.1;Parent=Phyra74995;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 24904 26663 . + 0 ID=Phyra74995;Parent=Phyra74995;rank=2 scaffold_11 . exon 24904 26663 . + . ID=Phyra74995.2;Parent=Phyra74995;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 26823 27542 . + 0 ID=Phyra74995;Parent=Phyra74995;rank=3 scaffold_11 . exon 26823 27542 . + . ID=Phyra74995.3;Parent=Phyra74995;constitutive=1;rank=3 scaffold_11 ensembl protein_coding_gene 28130 29152 . + . ID=Phyra74996;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000008;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 28130 29152 . + . ID=Phyra74996;Parent=Phyra74996;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 28130 29152 . + 0 ID=Phyra74996;Parent=Phyra74996;rank=1 scaffold_11 . exon 28130 29152 . + . ID=Phyra74996.1;Parent=Phyra74996;constitutive=1;rank=1 scaffold_11 . repeat_region 36143 36152 . ? . description=dust scaffold_11 . repeat_region 36637 36656 . ? . description=trf scaffold_11 . repeat_region 38223 38244 . ? . description=dust scaffold_11 . repeat_region 38455 38468 . ? . description=dust scaffold_11 ensembl protein_coding_gene 30496 31254 . - . ID=Phyra39825;biotype=protein_coding;external_name=gwEuk.11.271.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 30496 31254 . - . ID=Phyra39825;Parent=Phyra39825;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 30496 31254 . - 0 ID=Phyra39825;Parent=Phyra39825;rank=1 scaffold_11 . exon 30496 31254 . - . ID=Phyra39825.1;Parent=Phyra39825;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 33655 34443 . + . ID=Phyra74998;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000010;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 33655 34443 . + . ID=Phyra74998;Parent=Phyra74998;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 33655 34443 . + 0 ID=Phyra74998;Parent=Phyra74998;rank=1 scaffold_11 . exon 33655 34443 . + . ID=Phyra74998.1;Parent=Phyra74998;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 35073 35726 . + . ID=Phyra74999;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000011;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 35073 35726 . + . ID=Phyra74999;Parent=Phyra74999;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 35073 35726 . + 0 ID=Phyra74999;Parent=Phyra74999;rank=1 scaffold_11 . exon 35073 35726 . + . ID=Phyra74999.1;Parent=Phyra74999;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 38935 40249 . - . ID=Phyra75000;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000012;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 38935 40249 . - . ID=Phyra75000;Parent=Phyra75000;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 38935 39481 . - 0 ID=Phyra75000;Parent=Phyra75000;rank=2 scaffold_11 . exon 38935 39481 . - . ID=Phyra75000.2;Parent=Phyra75000;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 39777 40249 . - 0 ID=Phyra75000;Parent=Phyra75000;rank=1 scaffold_11 . biological_region 39932 39936 0.999 + . logic_name=eponine scaffold_11 . biological_region 41458 41460 0.999 + . logic_name=eponine scaffold_11 . biological_region 49423 49423 0.999 + . logic_name=eponine scaffold_11 . biological_region 49507 49513 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 42958 43623 . + . ID=Phyra39833;biotype=protein_coding;external_name=gwEuk.11.279.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 42958 43623 . + . ID=Phyra39833;Parent=Phyra39833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 42958 43158 . + 0 ID=Phyra39833;Parent=Phyra39833;rank=1 scaffold_11 . exon 42958 43158 . + . ID=Phyra39833.1;Parent=Phyra39833;constitutive=1;rank=1 scaffold_11 . CDS 43236 43344 . + 0 ID=Phyra39833;Parent=Phyra39833;rank=2 scaffold_11 . exon 43236 43344 . + . ID=Phyra39833.2;Parent=Phyra39833;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 43430 43623 . + 0 ID=Phyra39833;Parent=Phyra39833;rank=3 scaffold_11 . exon 43430 43623 . + . ID=Phyra39833.3;Parent=Phyra39833;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . exon 39777 40249 . - . ID=Phyra75000.1;Parent=Phyra75000;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 40532 41026 . - . ID=Phyra75001;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000013;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 40532 41026 . - . ID=Phyra75001;Parent=Phyra75001;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 40532 41026 . - 0 ID=Phyra75001;Parent=Phyra75001;rank=1 scaffold_11 . exon 40532 41026 . - . ID=Phyra75001.1;Parent=Phyra75001;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 42160 42642 . - . ID=Phyra75003;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000015;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 42160 42642 . - . ID=Phyra75003;Parent=Phyra75003;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 42160 42642 . - 0 ID=Phyra75003;Parent=Phyra75003;rank=1 scaffold_11 . exon 42160 42642 . - . ID=Phyra75003.1;Parent=Phyra75003;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 48393 50232 . - . ID=Phyra75006;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000018;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 48393 50232 . - . ID=Phyra75006;Parent=Phyra75006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 48393 48496 . - 0 ID=Phyra75006;Parent=Phyra75006;rank=6 scaffold_11 . exon 48393 48496 . - . ID=Phyra75006.6;Parent=Phyra75006;constitutive=1;ensembl_phase=1;rank=6 scaffold_11 . CDS 48572 48668 . - 0 ID=Phyra75006;Parent=Phyra75006;rank=5 scaffold_11 . exon 48572 48668 . - . ID=Phyra75006.5;Parent=Phyra75006;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_11 . CDS 48742 49072 . - 0 ID=Phyra75006;Parent=Phyra75006;rank=4 scaffold_11 . exon 48742 49072 . - . ID=Phyra75006.4;Parent=Phyra75006;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 49137 49286 . - 0 ID=Phyra75006;Parent=Phyra75006;rank=3 scaffold_11 . exon 49137 49286 . - . ID=Phyra75006.3;Parent=Phyra75006;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_11 . CDS 49349 49710 . - 0 ID=Phyra75006;Parent=Phyra75006;rank=2 scaffold_11 . exon 49349 49710 . - . ID=Phyra75006.2;Parent=Phyra75006;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . CDS 49762 50232 . - 0 ID=Phyra75006;Parent=Phyra75006;rank=1 scaffold_11 ensembl protein_coding_gene 41289 41765 . - . ID=Phyra93984;biotype=protein_coding;external_name=C_scaffold_11000008;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 41289 41765 . - . ID=Phyra93984;Parent=Phyra93984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 41289 41765 . - 0 ID=Phyra93984;Parent=Phyra93984;rank=1 scaffold_11 . exon 41289 41765 . - . ID=Phyra93984.1;Parent=Phyra93984;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 43972 45207 . + . ID=Phyra93988;biotype=protein_coding;external_name=C_scaffold_11000012;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 43972 45207 . + . ID=Phyra93988;Parent=Phyra93988;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 43972 44070 . + 0 ID=Phyra93988;Parent=Phyra93988;rank=1 scaffold_11 . exon 43972 44070 . + . ID=Phyra93988.1;Parent=Phyra93988;constitutive=1;rank=1 scaffold_11 . CDS 44145 44496 . + 0 ID=Phyra93988;Parent=Phyra93988;rank=2 scaffold_11 . exon 44145 44496 . + . ID=Phyra93988.2;Parent=Phyra93988;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 44559 44626 . + 0 ID=Phyra93988;Parent=Phyra93988;rank=3 scaffold_11 . exon 44559 44626 . + . ID=Phyra93988.3;Parent=Phyra93988;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 44685 44975 . + 0 ID=Phyra93988;Parent=Phyra93988;rank=4 scaffold_11 . exon 44685 44975 . + . ID=Phyra93988.4;Parent=Phyra93988;constitutive=1;rank=4 scaffold_11 . CDS 45058 45207 . + 0 ID=Phyra93988;Parent=Phyra93988;rank=5 scaffold_11 . exon 45058 45207 . + . ID=Phyra93988.5;Parent=Phyra93988;constitutive=1;rank=5 scaffold_11 ensembl protein_coding_gene 45960 46867 . + . ID=Phyra93989;biotype=protein_coding;external_name=C_scaffold_11000013;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 45960 46867 . + . ID=Phyra93989;Parent=Phyra93989;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 45960 46041 . + 0 ID=Phyra93989;Parent=Phyra93989;rank=1 scaffold_11 . exon 45960 46041 . + . ID=Phyra93989.1;Parent=Phyra93989;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 46100 46308 . + 0 ID=Phyra93989;Parent=Phyra93989;rank=2 scaffold_11 . exon 46100 46308 . + . ID=Phyra93989.2;Parent=Phyra93989;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 46373 46433 . + 0 ID=Phyra93989;Parent=Phyra93989;rank=3 scaffold_11 . exon 46373 46433 . + . ID=Phyra93989.3;Parent=Phyra93989;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . CDS 46497 46867 . + 0 ID=Phyra93989;Parent=Phyra93989;rank=4 scaffold_11 . exon 46497 46867 . + . ID=Phyra93989.4;Parent=Phyra93989;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 ensembl protein_coding_gene 46951 47442 . - . ID=Phyra93990;biotype=protein_coding;external_name=C_scaffold_11000014;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 46951 47442 . - . ID=Phyra93990;Parent=Phyra93990;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 46951 47442 . - 0 ID=Phyra93990;Parent=Phyra93990;rank=1 scaffold_11 . exon 46951 47442 . - . ID=Phyra93990.1;Parent=Phyra93990;constitutive=1;rank=1 scaffold_11 . repeat_region 59217 59254 . ? . description=trf scaffold_11 . exon 49762 50232 . - . ID=Phyra75006.1;Parent=Phyra75006;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 55453 55954 . - . ID=Phyra75008;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000020;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 55453 55954 . - . ID=Phyra75008;Parent=Phyra75008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 55453 55686 . - 0 ID=Phyra75008;Parent=Phyra75008;rank=2 scaffold_11 . exon 55453 55686 . - . ID=Phyra75008.2;Parent=Phyra75008;constitutive=1;rank=2 scaffold_11 . CDS 55805 55954 . - 0 ID=Phyra75008;Parent=Phyra75008;rank=1 scaffold_11 . exon 55805 55954 . - . ID=Phyra75008.1;Parent=Phyra75008;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 56491 56908 . - . ID=Phyra75009;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000021;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 56491 56908 . - . ID=Phyra75009;Parent=Phyra75009;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 56491 56705 . - 0 ID=Phyra75009;Parent=Phyra75009;rank=3 scaffold_11 . exon 56491 56705 . - . ID=Phyra75009.3;Parent=Phyra75009;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 56729 56837 . - 0 ID=Phyra75009;Parent=Phyra75009;rank=2 scaffold_11 . exon 56729 56837 . - . ID=Phyra75009.2;Parent=Phyra75009;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 56873 56908 . - 0 ID=Phyra75009;Parent=Phyra75009;rank=1 scaffold_11 . exon 56873 56908 . - . ID=Phyra75009.1;Parent=Phyra75009;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 57152 59375 . + . ID=Phyra75010;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000022;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 57152 59375 . + . ID=Phyra75010;Parent=Phyra75010;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 57152 57228 . + 0 ID=Phyra75010;Parent=Phyra75010;rank=1 scaffold_11 . exon 57152 57228 . + . ID=Phyra75010.1;Parent=Phyra75010;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 57413 59375 . + 0 ID=Phyra75010;Parent=Phyra75010;rank=2 scaffold_11 . exon 57413 59375 . + . ID=Phyra75010.2;Parent=Phyra75010;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 ensembl protein_coding_gene 51056 52623 . + . ID=Phyra93994;biotype=protein_coding;external_name=C_scaffold_11000018;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 51056 52623 . + . ID=Phyra93994;Parent=Phyra93994;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 51056 51209 . + 0 ID=Phyra93994;Parent=Phyra93994;rank=1 scaffold_11 . exon 51056 51209 . + . ID=Phyra93994.1;Parent=Phyra93994;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 51249 51639 . + 0 ID=Phyra93994;Parent=Phyra93994;rank=2 scaffold_11 . exon 51249 51639 . + . ID=Phyra93994.2;Parent=Phyra93994;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_11 . CDS 51707 52134 . + 0 ID=Phyra93994;Parent=Phyra93994;rank=3 scaffold_11 . exon 51707 52134 . + . ID=Phyra93994.3;Parent=Phyra93994;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 52200 52295 . + 0 ID=Phyra93994;Parent=Phyra93994;rank=4 scaffold_11 . exon 52200 52295 . + . ID=Phyra93994.4;Parent=Phyra93994;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 52466 52623 . + 0 ID=Phyra93994;Parent=Phyra93994;rank=5 scaffold_11 . exon 52466 52623 . + . ID=Phyra93994.5;Parent=Phyra93994;constitutive=1;ensembl_phase=1;rank=5 scaffold_11 . biological_region 59606 59610 0.999 + . logic_name=eponine scaffold_11 . biological_region 59874 59875 0.999 + . logic_name=eponine scaffold_11 . biological_region 60787 60793 0.999 + . logic_name=eponine scaffold_11 . biological_region 60837 60843 0.999 + . logic_name=eponine scaffold_11 . biological_region 60871 60874 0.999 + . logic_name=eponine scaffold_11 . biological_region 60915 60917 0.999 - . logic_name=eponine scaffold_11 . biological_region 60971 60972 0.999 + . logic_name=eponine scaffold_11 . biological_region 61297 61297 0.999 - . logic_name=eponine scaffold_11 . biological_region 62757 62760 0.999 - . logic_name=eponine scaffold_11 . biological_region 63372 63372 0.999 + . logic_name=eponine scaffold_11 . repeat_region 63783 63791 . ? . description=dust scaffold_11 . biological_region 66283 66287 0.999 + . logic_name=eponine scaffold_11 . biological_region 68243 68246 0.999 + . logic_name=eponine scaffold_11 ensembl protein_coding_gene 68157 69173 . + . ID=Phyra39853;biotype=protein_coding;external_name=gwEuk.11.299.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 68157 69173 . + . ID=Phyra39853;Parent=Phyra39853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 68157 69173 . + 0 ID=Phyra39853;Parent=Phyra39853;rank=1 scaffold_11 . exon 68157 69173 . + . ID=Phyra39853.1;Parent=Phyra39853;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 61876 62802 . - . ID=Phyra71266;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000001;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 61876 62802 . - . ID=Phyra71266;Parent=Phyra71266;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 61876 62802 . - 0 ID=Phyra71266;Parent=Phyra71266;rank=1 scaffold_11 . exon 61876 62802 . - . ID=Phyra71266.1;Parent=Phyra71266;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 65305 66792 . - . ID=Phyra71267;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000002;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 65305 66792 . - . ID=Phyra71267;Parent=Phyra71267;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 65305 66792 . - 0 ID=Phyra71267;Parent=Phyra71267;rank=1 scaffold_11 . exon 65305 66792 . - . ID=Phyra71267.1;Parent=Phyra71267;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 60525 61511 . + . ID=Phyra75011;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000023;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 60525 61511 . + . ID=Phyra75011;Parent=Phyra75011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 60525 61511 . + 0 ID=Phyra75011;Parent=Phyra75011;rank=1 scaffold_11 . exon 60525 61511 . + . ID=Phyra75011.1;Parent=Phyra75011;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 64050 64594 . - . ID=Phyra75013;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000025;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 64050 64594 . - . ID=Phyra75013;Parent=Phyra75013;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 64050 64167 . - 0 ID=Phyra75013;Parent=Phyra75013;rank=3 scaffold_11 . exon 64050 64167 . - . ID=Phyra75013.3;Parent=Phyra75013;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 64275 64394 . - 0 ID=Phyra75013;Parent=Phyra75013;rank=2 scaffold_11 . exon 64275 64394 . - . ID=Phyra75013.2;Parent=Phyra75013;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . CDS 64527 64594 . - 0 ID=Phyra75013;Parent=Phyra75013;rank=1 scaffold_11 . exon 64527 64594 . - . ID=Phyra75013.1;Parent=Phyra75013;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 69598 70171 . - . ID=Phyra39854;biotype=protein_coding;external_name=gwEuk.11.300.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 69598 70171 . - . ID=Phyra39854;Parent=Phyra39854;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 69598 69822 . - 0 ID=Phyra39854;Parent=Phyra39854;rank=2 scaffold_11 . exon 69598 69822 . - . ID=Phyra39854.2;Parent=Phyra39854;constitutive=1;rank=2 scaffold_11 . CDS 70079 70171 . - 0 ID=Phyra39854;Parent=Phyra39854;rank=1 scaffold_11 . exon 70079 70171 . - . ID=Phyra39854.1;Parent=Phyra39854;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 70263 70994 . + . ID=Phyra75016;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000028;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 70263 70994 . + . ID=Phyra75016;Parent=Phyra75016;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 70263 70994 . + 0 ID=Phyra75016;Parent=Phyra75016;rank=1 scaffold_11 . exon 70263 70994 . + . ID=Phyra75016.1;Parent=Phyra75016;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 71040 73012 . - . ID=Phyra75017;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000029;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 71040 73012 . - . ID=Phyra75017;Parent=Phyra75017;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 71040 72332 . - 0 ID=Phyra75017;Parent=Phyra75017;rank=4 scaffold_11 . exon 71040 72332 . - . ID=Phyra75017.4;Parent=Phyra75017;constitutive=1;rank=4 scaffold_11 . CDS 72354 72605 . - 0 ID=Phyra75017;Parent=Phyra75017;rank=3 scaffold_11 . exon 72354 72605 . - . ID=Phyra75017.3;Parent=Phyra75017;constitutive=1;rank=3 scaffold_11 . CDS 72671 72735 . - 0 ID=Phyra75017;Parent=Phyra75017;rank=2 scaffold_11 . exon 72671 72735 . - . ID=Phyra75017.2;Parent=Phyra75017;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 72817 73012 . - 0 ID=Phyra75017;Parent=Phyra75017;rank=1 scaffold_11 . exon 72817 73012 . - . ID=Phyra75017.1;Parent=Phyra75017;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 73704 74594 . - . ID=Phyra75018;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000030;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 73704 74594 . - . ID=Phyra75018;Parent=Phyra75018;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 73704 74477 . - 0 ID=Phyra75018;Parent=Phyra75018;rank=2 scaffold_11 . exon 73704 74477 . - . ID=Phyra75018.2;Parent=Phyra75018;constitutive=1;rank=2 scaffold_11 . CDS 74565 74594 . - 0 ID=Phyra75018;Parent=Phyra75018;rank=1 scaffold_11 . exon 74565 74594 . - . ID=Phyra75018.1;Parent=Phyra75018;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 74868 76991 . + . ID=Phyra75019;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000031;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 74868 76991 . + . ID=Phyra75019;Parent=Phyra75019;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 74868 76991 . + 0 ID=Phyra75019;Parent=Phyra75019;rank=1 scaffold_11 . exon 74868 76991 . + . ID=Phyra75019.1;Parent=Phyra75019;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 77456 78274 . + . ID=Phyra75020;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000032;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 77456 78274 . + . ID=Phyra75020;Parent=Phyra75020;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 77456 78274 . + 0 ID=Phyra75020;Parent=Phyra75020;rank=1 scaffold_11 . exon 77456 78274 . + . ID=Phyra75020.1;Parent=Phyra75020;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 79078 81699 . + . ID=Phyra75021;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000033;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 79078 81699 . + . ID=Phyra75021;Parent=Phyra75021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 79078 81699 . + 0 ID=Phyra75021;Parent=Phyra75021;rank=1 scaffold_11 . exon 79078 81699 . + . ID=Phyra75021.1;Parent=Phyra75021;constitutive=1;rank=1 scaffold_11 . biological_region 79242 79242 0.999 - . logic_name=eponine scaffold_11 . biological_region 79322 79323 0.999 + . logic_name=eponine scaffold_11 . biological_region 81947 81948 0.999 + . logic_name=eponine scaffold_11 . biological_region 81970 81974 0.999 - . logic_name=eponine scaffold_11 . biological_region 82588 82590 0.999 + . logic_name=eponine scaffold_11 . biological_region 83988 83991 0.999 - . logic_name=eponine scaffold_11 . biological_region 85368 85368 0.999 - . logic_name=eponine scaffold_11 . repeat_region 87149 87167 . ? . description=dust scaffold_11 . repeat_region 87753 87761 . ? . description=dust scaffold_11 ensembl protein_coding_gene 82921 83262 . + . ID=Phyra39858;biotype=protein_coding;external_name=gwEuk.11.304.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 82921 83262 . + . ID=Phyra39858;Parent=Phyra39858;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 82921 83262 . + 0 ID=Phyra39858;Parent=Phyra39858;rank=1 scaffold_11 . exon 82921 83262 . + . ID=Phyra39858.1;Parent=Phyra39858;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 88111 88530 . - . ID=Phyra71269;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000004;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 88111 88530 . - . ID=Phyra71269;Parent=Phyra71269;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 88111 88235 . - 0 ID=Phyra71269;Parent=Phyra71269;rank=2 scaffold_11 . exon 88111 88235 . - . ID=Phyra71269.2;Parent=Phyra71269;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 88305 88530 . - 0 ID=Phyra71269;Parent=Phyra71269;rank=1 scaffold_11 . exon 88305 88530 . - . ID=Phyra71269.1;Parent=Phyra71269;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 81804 82706 . - . ID=Phyra75022;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000034;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 81804 82706 . - . ID=Phyra75022;Parent=Phyra75022;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 81804 82706 . - 0 ID=Phyra75022;Parent=Phyra75022;rank=1 scaffold_11 . exon 81804 82706 . - . ID=Phyra75022.1;Parent=Phyra75022;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 83483 84190 . - . ID=Phyra75024;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000036;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 83483 84190 . - . ID=Phyra75024;Parent=Phyra75024;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 83483 84190 . - 0 ID=Phyra75024;Parent=Phyra75024;rank=1 scaffold_11 . exon 83483 84190 . - . ID=Phyra75024.1;Parent=Phyra75024;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 84488 87685 . + . ID=Phyra75025;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000037;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 84488 87685 . + . ID=Phyra75025;Parent=Phyra75025;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 84488 85470 . + 0 ID=Phyra75025;Parent=Phyra75025;rank=1 scaffold_11 . exon 84488 85470 . + . ID=Phyra75025.1;Parent=Phyra75025;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 85786 87685 . + 0 ID=Phyra75025;Parent=Phyra75025;rank=2 scaffold_11 . exon 85786 87685 . + . ID=Phyra75025.2;Parent=Phyra75025;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 ensembl protein_coding_gene 88832 89960 . + . ID=Phyra94000;biotype=protein_coding;external_name=C_scaffold_11000024;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 88832 89960 . + . ID=Phyra94000;Parent=Phyra94000;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 88832 88846 . + 0 ID=Phyra94000;Parent=Phyra94000;rank=1 scaffold_11 . exon 88832 88846 . + . ID=Phyra94000.1;Parent=Phyra94000;constitutive=1;rank=1 scaffold_11 . CDS 88983 89960 . + 0 ID=Phyra94000;Parent=Phyra94000;rank=2 scaffold_11 . exon 88983 89960 . + . ID=Phyra94000.2;Parent=Phyra94000;constitutive=1;rank=2 scaffold_11 . repeat_region 94614 94652 . ? . description=trf scaffold_11 . repeat_region 95555 95593 . ? . description=trf scaffold_11 ensembl protein_coding_gene 93538 94065 . - . ID=Phyra75029;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000041;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 93538 94065 . - . ID=Phyra75029;Parent=Phyra75029;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 93538 94065 . - 0 ID=Phyra75029;Parent=Phyra75029;rank=1 scaffold_11 . exon 93538 94065 . - . ID=Phyra75029.1;Parent=Phyra75029;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 96882 98134 . + . ID=Phyra75031;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000043;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 96882 98134 . + . ID=Phyra75031;Parent=Phyra75031;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 96882 97142 . + 0 ID=Phyra75031;Parent=Phyra75031;rank=1 scaffold_11 . exon 96882 97142 . + . ID=Phyra75031.1;Parent=Phyra75031;constitutive=1;rank=1 scaffold_11 . CDS 97250 97416 . + 0 ID=Phyra75031;Parent=Phyra75031;rank=2 scaffold_11 . exon 97250 97416 . + . ID=Phyra75031.2;Parent=Phyra75031;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . CDS 97486 98134 . + 0 ID=Phyra75031;Parent=Phyra75031;rank=3 scaffold_11 . exon 97486 98134 . + . ID=Phyra75031.3;Parent=Phyra75031;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 ensembl protein_coding_gene 98415 98999 . + . ID=Phyra75032;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000044;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 98415 98999 . + . ID=Phyra75032;Parent=Phyra75032;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 98415 98999 . + 0 ID=Phyra75032;Parent=Phyra75032;rank=1 scaffold_11 . exon 98415 98999 . + . ID=Phyra75032.1;Parent=Phyra75032;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 90160 91644 . - . ID=Phyra94001;biotype=protein_coding;external_name=C_scaffold_11000025;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 90160 91644 . - . ID=Phyra94001;Parent=Phyra94001;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 90160 90235 . - 0 ID=Phyra94001;Parent=Phyra94001;rank=3 scaffold_11 . exon 90160 90235 . - . ID=Phyra94001.3;Parent=Phyra94001;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 90329 90782 . - 0 ID=Phyra94001;Parent=Phyra94001;rank=2 scaffold_11 . exon 90329 90782 . - . ID=Phyra94001.2;Parent=Phyra94001;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_11 . CDS 91167 91644 . - 0 ID=Phyra94001;Parent=Phyra94001;rank=1 scaffold_11 . exon 91167 91644 . - . ID=Phyra94001.1;Parent=Phyra94001;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 94838 95392 . - . ID=Phyra94004;biotype=protein_coding;external_name=C_scaffold_11000028;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 94838 95392 . - . ID=Phyra94004;Parent=Phyra94004;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 94838 95392 . - 0 ID=Phyra94004;Parent=Phyra94004;rank=1 scaffold_11 . exon 94838 95392 . - . ID=Phyra94004.1;Parent=Phyra94004;constitutive=1;rank=1 scaffold_11 . repeat_region 100023 100031 . ? . description=dust scaffold_11 . repeat_region 107393 107401 . ? . description=dust scaffold_11 . repeat_region 107523 107576 . ? . description=dust scaffold_11 ensembl protein_coding_gene 99074 99616 . - . ID=Phyra75033;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000045;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 99074 99616 . - . ID=Phyra75033;Parent=Phyra75033;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 99074 99616 . - 0 ID=Phyra75033;Parent=Phyra75033;rank=1 scaffold_11 . exon 99074 99616 . - . ID=Phyra75033.1;Parent=Phyra75033;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 103463 104218 . + . ID=Phyra75034;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000046;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 103463 104218 . + . ID=Phyra75034;Parent=Phyra75034;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 103463 104218 . + 0 ID=Phyra75034;Parent=Phyra75034;rank=1 scaffold_11 . exon 103463 104218 . + . ID=Phyra75034.1;Parent=Phyra75034;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 104390 105770 . - . ID=Phyra75035;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000047;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 104390 105770 . - . ID=Phyra75035;Parent=Phyra75035;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 104390 104458 . - 0 ID=Phyra75035;Parent=Phyra75035;rank=3 scaffold_11 . exon 104390 104458 . - . ID=Phyra75035.3;Parent=Phyra75035;constitutive=1;rank=3 scaffold_11 . CDS 104537 105160 . - 0 ID=Phyra75035;Parent=Phyra75035;rank=2 scaffold_11 . exon 104537 105160 . - . ID=Phyra75035.2;Parent=Phyra75035;constitutive=1;rank=2 scaffold_11 . CDS 105228 105770 . - 0 ID=Phyra75035;Parent=Phyra75035;rank=1 scaffold_11 . exon 105228 105770 . - . ID=Phyra75035.1;Parent=Phyra75035;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 106214 107361 . + . ID=Phyra75036;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000048;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 106214 107361 . + . ID=Phyra75036;Parent=Phyra75036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 106214 106281 . + 0 ID=Phyra75036;Parent=Phyra75036;rank=1 scaffold_11 . exon 106214 106281 . + . ID=Phyra75036.1;Parent=Phyra75036;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 106342 106440 . + 0 ID=Phyra75036;Parent=Phyra75036;rank=2 scaffold_11 . exon 106342 106440 . + . ID=Phyra75036.2;Parent=Phyra75036;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . CDS 106482 107361 . + 0 ID=Phyra75036;Parent=Phyra75036;rank=3 scaffold_11 . exon 106482 107361 . + . ID=Phyra75036.3;Parent=Phyra75036;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 ensembl protein_coding_gene 107459 108152 . - . ID=Phyra75037;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000049;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 107459 108152 . - . ID=Phyra75037;Parent=Phyra75037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 107459 107514 . - 0 ID=Phyra75037;Parent=Phyra75037;rank=3 scaffold_11 . exon 107459 107514 . - . ID=Phyra75037.3;Parent=Phyra75037;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 107600 107905 . - 0 ID=Phyra75037;Parent=Phyra75037;rank=2 scaffold_11 . exon 107600 107905 . - . ID=Phyra75037.2;Parent=Phyra75037;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 107993 108152 . - 0 ID=Phyra75037;Parent=Phyra75037;rank=1 scaffold_11 . exon 107993 108152 . - . ID=Phyra75037.1;Parent=Phyra75037;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . biological_region 112314 112319 0.999 + . logic_name=eponine scaffold_11 . biological_region 112420 112420 0.999 - . logic_name=eponine scaffold_11 . repeat_region 116917 116987 . ? . description=trf scaffold_11 . biological_region 118613 118614 0.999 - . logic_name=eponine scaffold_11 ensembl pseudogene 111551 111944 . - . ID=Phyra39874;biotype=pseudogene;external_name=gwEuk.11.320.1;logic_name=jgi_phyra1 scaffold_11 ensembl pseudogene 111551 111944 . - . ID=Phyra39874;Parent=Phyra39874;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_11 . exon 111551 111944 . - . ID=Phyra39874.1;Parent=Phyra39874;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 114027 115254 . - . ID=Phyra71271;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000006;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 114027 115254 . - . ID=Phyra71271;Parent=Phyra71271;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 114027 114128 . - 0 ID=Phyra71271;Parent=Phyra71271;rank=3 scaffold_11 . exon 114027 114128 . - . ID=Phyra71271.3;Parent=Phyra71271;constitutive=1;rank=3 scaffold_11 . CDS 114207 115049 . - 0 ID=Phyra71271;Parent=Phyra71271;rank=2 scaffold_11 . exon 114207 115049 . - . ID=Phyra71271.2;Parent=Phyra71271;constitutive=1;rank=2 scaffold_11 . CDS 115111 115254 . - 0 ID=Phyra71271;Parent=Phyra71271;rank=1 scaffold_11 . exon 115111 115254 . - . ID=Phyra71271.1;Parent=Phyra71271;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 117080 117916 . - . ID=Phyra71272;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000007;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 117080 117916 . - . ID=Phyra71272;Parent=Phyra71272;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 117080 117916 . - 0 ID=Phyra71272;Parent=Phyra71272;rank=1 scaffold_11 . exon 117080 117916 . - . ID=Phyra71272.1;Parent=Phyra71272;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 112181 113308 . + . ID=Phyra75038;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000050;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 112181 113308 . + . ID=Phyra75038;Parent=Phyra75038;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 112181 113308 . + 0 ID=Phyra75038;Parent=Phyra75038;rank=1 scaffold_11 . exon 112181 113308 . + . ID=Phyra75038.1;Parent=Phyra75038;constitutive=1;rank=1 scaffold_11 . repeat_region 121574 121581 . ? . description=dust scaffold_11 . repeat_region 122360 122368 . ? . description=dust scaffold_11 ensembl protein_coding_gene 120362 120931 . - . ID=Phyra75041;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000053;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 120362 120931 . - . ID=Phyra75041;Parent=Phyra75041;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 120362 120931 . - 0 ID=Phyra75041;Parent=Phyra75041;rank=1 scaffold_11 . exon 120362 120931 . - . ID=Phyra75041.1;Parent=Phyra75041;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 124498 125587 . + . ID=Phyra75042;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000054;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 124498 125587 . + . ID=Phyra75042;Parent=Phyra75042;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 124498 125521 . + 0 ID=Phyra75042;Parent=Phyra75042;rank=1 scaffold_11 . exon 124498 125521 . + . ID=Phyra75042.1;Parent=Phyra75042;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 125547 125587 . + 0 ID=Phyra75042;Parent=Phyra75042;rank=2 scaffold_11 . exon 125547 125587 . + . ID=Phyra75042.2;Parent=Phyra75042;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . repeat_region 134125 134175 . ? . description=trf scaffold_11 . repeat_region 134593 134644 . ? . description=trf scaffold_11 . repeat_region 134596 134746 . ? . description=trf scaffold_11 . repeat_region 134627 134685 . ? . description=trf scaffold_11 . repeat_region 134688 134730 . ? . description=trf scaffold_11 . biological_region 134753 134755 0.999 - . logic_name=eponine scaffold_11 . repeat_region 135611 135641 . ? . description=trf scaffold_11 . biological_region 136965 136965 0.999 + . logic_name=eponine scaffold_11 ensembl protein_coding_gene 135116 135402 . - . ID=Phyra39884;biotype=protein_coding;external_name=gwEuk.11.330.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 135116 135402 . - . ID=Phyra39884;Parent=Phyra39884;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 135116 135163 . - 0 ID=Phyra39884;Parent=Phyra39884;rank=2 scaffold_11 . exon 135116 135163 . - . ID=Phyra39884.2;Parent=Phyra39884;constitutive=1;rank=2 scaffold_11 . CDS 135223 135402 . - 0 ID=Phyra39884;Parent=Phyra39884;rank=1 scaffold_11 . exon 135223 135402 . - . ID=Phyra39884.1;Parent=Phyra39884;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 135678 136151 . + . ID=Phyra39886;biotype=protein_coding;external_name=gwEuk.11.332.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 135678 136151 . + . ID=Phyra39886;Parent=Phyra39886;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 135678 135789 . + 0 ID=Phyra39886;Parent=Phyra39886;rank=1 scaffold_11 . exon 135678 135789 . + . ID=Phyra39886.1;Parent=Phyra39886;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 135865 136151 . + 0 ID=Phyra39886;Parent=Phyra39886;rank=2 scaffold_11 . exon 135865 136151 . + . ID=Phyra39886.2;Parent=Phyra39886;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 ensembl protein_coding_gene 134077 134782 . + . ID=Phyra71273;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000008;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 134077 134782 . + . ID=Phyra71273;Parent=Phyra71273;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 134077 134119 . + 0 ID=Phyra71273;Parent=Phyra71273;rank=1 scaffold_11 . exon 134077 134119 . + . ID=Phyra71273.1;Parent=Phyra71273;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 134204 134224 . + 0 ID=Phyra71273;Parent=Phyra71273;rank=2 scaffold_11 . exon 134204 134224 . + . ID=Phyra71273.2;Parent=Phyra71273;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 134304 134782 . + 0 ID=Phyra71273;Parent=Phyra71273;rank=3 scaffold_11 . exon 134304 134782 . + . ID=Phyra71273.3;Parent=Phyra71273;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 ensembl protein_coding_gene 136823 139407 . + . ID=Phyra75045;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000057;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 136823 139407 . + . ID=Phyra75045;Parent=Phyra75045;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 136823 137310 . + 0 ID=Phyra75045;Parent=Phyra75045;rank=1 scaffold_11 . exon 136823 137310 . + . ID=Phyra75045.1;Parent=Phyra75045;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 137388 139407 . + 0 ID=Phyra75045;Parent=Phyra75045;rank=2 scaffold_11 . exon 137388 139407 . + . ID=Phyra75045.2;Parent=Phyra75045;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . repeat_region 143228 143913 . ? . description=dust scaffold_11 . repeat_region 145711 145769 . ? . description=dust scaffold_11 ensembl protein_coding_gene 139602 140103 . - . ID=Phyra75046;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000058;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 139602 140103 . - . ID=Phyra75046;Parent=Phyra75046;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 139602 139937 . - 0 ID=Phyra75046;Parent=Phyra75046;rank=2 scaffold_11 . exon 139602 139937 . - . ID=Phyra75046.2;Parent=Phyra75046;constitutive=1;rank=2 scaffold_11 . CDS 140077 140103 . - 0 ID=Phyra75046;Parent=Phyra75046;rank=1 scaffold_11 . exon 140077 140103 . - . ID=Phyra75046.1;Parent=Phyra75046;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 145610 146356 . + . ID=Phyra75048;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000060;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 145610 146356 . + . ID=Phyra75048;Parent=Phyra75048;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 145610 146356 . + 0 ID=Phyra75048;Parent=Phyra75048;rank=1 scaffold_11 . exon 145610 146356 . + . ID=Phyra75048.1;Parent=Phyra75048;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 140607 141048 . + . ID=Phyra94006;biotype=protein_coding;external_name=C_scaffold_11000030;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 140607 141048 . + . ID=Phyra94006;Parent=Phyra94006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 140607 140625 . + 0 ID=Phyra94006;Parent=Phyra94006;rank=1 scaffold_11 . exon 140607 140625 . + . ID=Phyra94006.1;Parent=Phyra94006;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 140694 140955 . + 0 ID=Phyra94006;Parent=Phyra94006;rank=2 scaffold_11 . exon 140694 140955 . + . ID=Phyra94006.2;Parent=Phyra94006;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_11 . CDS 141027 141048 . + 0 ID=Phyra94006;Parent=Phyra94006;rank=3 scaffold_11 . exon 141027 141048 . + . ID=Phyra94006.3;Parent=Phyra94006;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . biological_region 153831 153837 0.999 + . logic_name=eponine scaffold_11 ensembl protein_coding_gene 151445 152982 . + . ID=Phyra75049;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000061;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 151445 152982 . + . ID=Phyra75049;Parent=Phyra75049;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 151445 151572 . + 0 ID=Phyra75049;Parent=Phyra75049;rank=1 scaffold_11 . exon 151445 151572 . + . ID=Phyra75049.1;Parent=Phyra75049;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 151806 152310 . + 0 ID=Phyra75049;Parent=Phyra75049;rank=2 scaffold_11 . exon 151806 152310 . + . ID=Phyra75049.2;Parent=Phyra75049;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 152396 152472 . + 0 ID=Phyra75049;Parent=Phyra75049;rank=3 scaffold_11 . exon 152396 152472 . + . ID=Phyra75049.3;Parent=Phyra75049;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 152492 152496 . + 0 ID=Phyra75049;Parent=Phyra75049;rank=4 scaffold_11 . exon 152492 152496 . + . ID=Phyra75049.4;Parent=Phyra75049;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 152525 152982 . + 0 ID=Phyra75049;Parent=Phyra75049;rank=5 scaffold_11 . exon 152525 152982 . + . ID=Phyra75049.5;Parent=Phyra75049;constitutive=1;ensembl_phase=1;rank=5 scaffold_11 ensembl protein_coding_gene 154464 160598 . - . ID=Phyra94007;biotype=protein_coding;external_name=C_scaffold_11000031;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 154464 160598 . - . ID=Phyra94007;Parent=Phyra94007;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 154464 155165 . - 0 ID=Phyra94007;Parent=Phyra94007;rank=11 scaffold_11 . exon 154464 155165 . - . ID=Phyra94007.11;Parent=Phyra94007;constitutive=1;rank=11 scaffold_11 . CDS 155232 156134 . - 0 ID=Phyra94007;Parent=Phyra94007;rank=10 scaffold_11 . exon 155232 156134 . - . ID=Phyra94007.10;Parent=Phyra94007;constitutive=1;rank=10 scaffold_11 . CDS 156174 156586 . - 0 ID=Phyra94007;Parent=Phyra94007;rank=9 scaffold_11 . exon 156174 156586 . - . ID=Phyra94007.9;Parent=Phyra94007;constitutive=1;ensembl_phase=1;rank=9 scaffold_11 . CDS 156611 157612 . - 0 ID=Phyra94007;Parent=Phyra94007;rank=8 scaffold_11 . exon 156611 157612 . - . ID=Phyra94007.8;Parent=Phyra94007;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_11 . CDS 157793 158114 . - 0 ID=Phyra94007;Parent=Phyra94007;rank=7 scaffold_11 . exon 157793 158114 . - . ID=Phyra94007.7;Parent=Phyra94007;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_11 . CDS 158319 158431 . - 0 ID=Phyra94007;Parent=Phyra94007;rank=6 scaffold_11 . exon 158319 158431 . - . ID=Phyra94007.6;Parent=Phyra94007;constitutive=1;ensembl_phase=1;rank=6 scaffold_11 . CDS 158555 159316 . - 0 ID=Phyra94007;Parent=Phyra94007;rank=5 scaffold_11 . CDS 159350 159522 . - 0 ID=Phyra94007;Parent=Phyra94007;rank=4 scaffold_11 . CDS 159781 159985 . - 0 ID=Phyra94007;Parent=Phyra94007;rank=3 scaffold_11 . CDS 160016 160369 . - 0 ID=Phyra94007;Parent=Phyra94007;rank=2 scaffold_11 . CDS 160421 160598 . - 0 ID=Phyra94007;Parent=Phyra94007;rank=1 scaffold_11 . repeat_region 161183 161238 . ? . description=trf scaffold_11 ensembl protein_coding_gene 160973 161335 . + . ID=Phyra75051;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000063;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 160973 161335 . + . ID=Phyra75051;Parent=Phyra75051;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 160973 161335 . + 0 ID=Phyra75051;Parent=Phyra75051;rank=1 scaffold_11 . exon 160973 161335 . + . ID=Phyra75051.1;Parent=Phyra75051;constitutive=1;rank=1 scaffold_11 . exon 158555 159316 . - . ID=Phyra94007.5;Parent=Phyra94007;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_11 . exon 159350 159522 . - . ID=Phyra94007.4;Parent=Phyra94007;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_11 . exon 159781 159985 . - . ID=Phyra94007.3;Parent=Phyra94007;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_11 . exon 160016 160369 . - . ID=Phyra94007.2;Parent=Phyra94007;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_11 . exon 160421 160598 . - . ID=Phyra94007.1;Parent=Phyra94007;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 164500 168514 . - . ID=Phyra94008;biotype=protein_coding;external_name=C_scaffold_11000032;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 164500 168514 . - . ID=Phyra94008;Parent=Phyra94008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 164500 164787 . - 0 ID=Phyra94008;Parent=Phyra94008;rank=10 scaffold_11 . exon 164500 164787 . - . ID=Phyra94008.10;Parent=Phyra94008;constitutive=1;rank=10 scaffold_11 . CDS 164893 165039 . - 0 ID=Phyra94008;Parent=Phyra94008;rank=9 scaffold_11 . exon 164893 165039 . - . ID=Phyra94008.9;Parent=Phyra94008;constitutive=1;rank=9 scaffold_11 . CDS 165127 165170 . - 0 ID=Phyra94008;Parent=Phyra94008;rank=8 scaffold_11 . exon 165127 165170 . - . ID=Phyra94008.8;Parent=Phyra94008;constitutive=1;ensembl_phase=1;rank=8 scaffold_11 . CDS 165915 165984 . - 0 ID=Phyra94008;Parent=Phyra94008;rank=7 scaffold_11 . exon 165915 165984 . - . ID=Phyra94008.7;Parent=Phyra94008;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_11 . CDS 166073 166178 . - 0 ID=Phyra94008;Parent=Phyra94008;rank=6 scaffold_11 . exon 166073 166178 . - . ID=Phyra94008.6;Parent=Phyra94008;constitutive=1;ensembl_phase=2;rank=6 scaffold_11 . CDS 166227 166591 . - 0 ID=Phyra94008;Parent=Phyra94008;rank=5 scaffold_11 . exon 166227 166591 . - . ID=Phyra94008.5;Parent=Phyra94008;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_11 . CDS 167102 167430 . - 0 ID=Phyra94008;Parent=Phyra94008;rank=4 scaffold_11 . exon 167102 167430 . - . ID=Phyra94008.4;Parent=Phyra94008;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 167482 167604 . - 0 ID=Phyra94008;Parent=Phyra94008;rank=3 scaffold_11 . exon 167482 167604 . - . ID=Phyra94008.3;Parent=Phyra94008;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 167635 167927 . - 0 ID=Phyra94008;Parent=Phyra94008;rank=2 scaffold_11 . exon 167635 167927 . - . ID=Phyra94008.2;Parent=Phyra94008;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 168249 168514 . - 0 ID=Phyra94008;Parent=Phyra94008;rank=1 scaffold_11 . exon 168249 168514 . - . ID=Phyra94008.1;Parent=Phyra94008;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . biological_region 171027 171030 0.999 + . logic_name=eponine scaffold_11 . biological_region 171422 171424 0.999 + . logic_name=eponine scaffold_11 . biological_region 171441 171445 0.999 - . logic_name=eponine scaffold_11 . biological_region 172207 172211 0.999 + . logic_name=eponine scaffold_11 . repeat_region 176148 176155 . ? . description=dust scaffold_11 . repeat_region 176362 176370 . ? . description=dust scaffold_11 ensembl protein_coding_gene 170641 171534 . - . ID=Phyra71274;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000009;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 170641 171534 . - . ID=Phyra71274;Parent=Phyra71274;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 170641 171534 . - 0 ID=Phyra71274;Parent=Phyra71274;rank=1 scaffold_11 . exon 170641 171534 . - . ID=Phyra71274.1;Parent=Phyra71274;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 176623 177591 . - . ID=Phyra71275;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000010;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 176623 177591 . - . ID=Phyra71275;Parent=Phyra71275;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 176623 177591 . - 0 ID=Phyra71275;Parent=Phyra71275;rank=1 scaffold_11 . exon 176623 177591 . - . ID=Phyra71275.1;Parent=Phyra71275;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 172151 173099 . + . ID=Phyra75054;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000066;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 172151 173099 . + . ID=Phyra75054;Parent=Phyra75054;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 172151 172526 . + 0 ID=Phyra75054;Parent=Phyra75054;rank=1 scaffold_11 . exon 172151 172526 . + . ID=Phyra75054.1;Parent=Phyra75054;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 172608 172735 . + 0 ID=Phyra75054;Parent=Phyra75054;rank=2 scaffold_11 . exon 172608 172735 . + . ID=Phyra75054.2;Parent=Phyra75054;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 172809 173099 . + 0 ID=Phyra75054;Parent=Phyra75054;rank=3 scaffold_11 . exon 172809 173099 . + . ID=Phyra75054.3;Parent=Phyra75054;constitutive=1;rank=3 scaffold_11 ensembl protein_coding_gene 173636 174820 . + . ID=Phyra75055;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000067;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 173636 174820 . + . ID=Phyra75055;Parent=Phyra75055;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 173636 174820 . + 0 ID=Phyra75055;Parent=Phyra75055;rank=1 scaffold_11 . exon 173636 174820 . + . ID=Phyra75055.1;Parent=Phyra75055;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 177747 178670 . + . ID=Phyra75057;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000069;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 177747 178670 . + . ID=Phyra75057;Parent=Phyra75057;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 177747 178670 . + 0 ID=Phyra75057;Parent=Phyra75057;rank=1 scaffold_11 . exon 177747 178670 . + . ID=Phyra75057.1;Parent=Phyra75057;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 180847 181480 . - . ID=Phyra39903;biotype=protein_coding;external_name=gwEuk.11.349.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 180847 181480 . - . ID=Phyra39903;Parent=Phyra39903;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 180847 181041 . - 0 ID=Phyra39903;Parent=Phyra39903;rank=3 scaffold_11 . exon 180847 181041 . - . ID=Phyra39903.3;Parent=Phyra39903;constitutive=1;rank=3 scaffold_11 . CDS 181118 181267 . - 0 ID=Phyra39903;Parent=Phyra39903;rank=2 scaffold_11 . exon 181118 181267 . - . ID=Phyra39903.2;Parent=Phyra39903;constitutive=1;rank=2 scaffold_11 . CDS 181343 181480 . - 0 ID=Phyra39903;Parent=Phyra39903;rank=1 scaffold_11 . exon 181343 181480 . - . ID=Phyra39903.1;Parent=Phyra39903;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 187640 189553 . + . ID=Phyra75060;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000072;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 187640 189553 . + . ID=Phyra75060;Parent=Phyra75060;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 187640 189553 . + 0 ID=Phyra75060;Parent=Phyra75060;rank=1 scaffold_11 . exon 187640 189553 . + . ID=Phyra75060.1;Parent=Phyra75060;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 181675 185257 . + . ID=Phyra94012;biotype=protein_coding;external_name=C_scaffold_11000036;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 181675 185257 . + . ID=Phyra94012;Parent=Phyra94012;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 181675 182621 . + 0 ID=Phyra94012;Parent=Phyra94012;rank=1 scaffold_11 . exon 181675 182621 . + . ID=Phyra94012.1;Parent=Phyra94012;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 182646 183010 . + 0 ID=Phyra94012;Parent=Phyra94012;rank=2 scaffold_11 . exon 182646 183010 . + . ID=Phyra94012.2;Parent=Phyra94012;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 183105 183166 . + 0 ID=Phyra94012;Parent=Phyra94012;rank=3 scaffold_11 . exon 183105 183166 . + . ID=Phyra94012.3;Parent=Phyra94012;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 183235 183254 . + 0 ID=Phyra94012;Parent=Phyra94012;rank=4 scaffold_11 . exon 183235 183254 . + . ID=Phyra94012.4;Parent=Phyra94012;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_11 . CDS 183400 183590 . + 0 ID=Phyra94012;Parent=Phyra94012;rank=5 scaffold_11 . exon 183400 183590 . + . ID=Phyra94012.5;Parent=Phyra94012;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_11 . CDS 183816 183899 . + 0 ID=Phyra94012;Parent=Phyra94012;rank=6 scaffold_11 . exon 183816 183899 . + . ID=Phyra94012.6;Parent=Phyra94012;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_11 . CDS 184014 184273 . + 0 ID=Phyra94012;Parent=Phyra94012;rank=7 scaffold_11 . exon 184014 184273 . + . ID=Phyra94012.7;Parent=Phyra94012;constitutive=1;ensembl_phase=1;rank=7 scaffold_11 . CDS 184583 185257 . + 0 ID=Phyra94012;Parent=Phyra94012;rank=8 scaffold_11 . exon 184583 185257 . + . ID=Phyra94012.8;Parent=Phyra94012;constitutive=1;rank=8 scaffold_11 . biological_region 190846 190846 0.999 + . logic_name=eponine scaffold_11 . biological_region 191102 191104 0.999 - . logic_name=eponine scaffold_11 . repeat_region 192541 192548 . ? . description=dust scaffold_11 . repeat_region 194442 194449 . ? . description=dust scaffold_11 . biological_region 195855 195861 0.999 + . logic_name=eponine scaffold_11 . repeat_region 195976 196008 . ? . description=trf scaffold_11 . repeat_region 195981 196011 . ? . description=trf scaffold_11 . repeat_region 197931 197961 . ? . description=trf scaffold_11 . repeat_region 197931 197961 . ? . description=dust scaffold_11 ensembl protein_coding_gene 190950 192473 . + . ID=Phyra75061;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000073;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 190950 192473 . + . ID=Phyra75061;Parent=Phyra75061;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 190950 192473 . + 0 ID=Phyra75061;Parent=Phyra75061;rank=1 scaffold_11 . exon 190950 192473 . + . ID=Phyra75061.1;Parent=Phyra75061;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 192593 194611 . - . ID=Phyra75062;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000074;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 192593 194611 . - . ID=Phyra75062;Parent=Phyra75062;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 192593 193730 . - 0 ID=Phyra75062;Parent=Phyra75062;rank=4 scaffold_11 . exon 192593 193730 . - . ID=Phyra75062.4;Parent=Phyra75062;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 193795 194239 . - 0 ID=Phyra75062;Parent=Phyra75062;rank=3 scaffold_11 . exon 193795 194239 . - . ID=Phyra75062.3;Parent=Phyra75062;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_11 . CDS 194312 194378 . - 0 ID=Phyra75062;Parent=Phyra75062;rank=2 scaffold_11 . exon 194312 194378 . - . ID=Phyra75062.2;Parent=Phyra75062;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 194555 194611 . - 0 ID=Phyra75062;Parent=Phyra75062;rank=1 scaffold_11 . exon 194555 194611 . - . ID=Phyra75062.1;Parent=Phyra75062;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 197491 198653 . - . ID=Phyra75064;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000076;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 197491 198653 . - . ID=Phyra75064;Parent=Phyra75064;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 197491 197625 . - 0 ID=Phyra75064;Parent=Phyra75064;rank=6 scaffold_11 . exon 197491 197625 . - . ID=Phyra75064.6;Parent=Phyra75064;constitutive=1;rank=6 scaffold_11 . CDS 197698 197769 . - 0 ID=Phyra75064;Parent=Phyra75064;rank=5 scaffold_11 . exon 197698 197769 . - . ID=Phyra75064.5;Parent=Phyra75064;constitutive=1;rank=5 scaffold_11 . CDS 197838 197925 . - 0 ID=Phyra75064;Parent=Phyra75064;rank=4 scaffold_11 . exon 197838 197925 . - . ID=Phyra75064.4;Parent=Phyra75064;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 198008 198242 . - 0 ID=Phyra75064;Parent=Phyra75064;rank=3 scaffold_11 . exon 198008 198242 . - . ID=Phyra75064.3;Parent=Phyra75064;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_11 . CDS 198327 198445 . - 0 ID=Phyra75064;Parent=Phyra75064;rank=2 scaffold_11 . CDS 198520 198653 . - 0 ID=Phyra75064;Parent=Phyra75064;rank=1 scaffold_11 ensembl protein_coding_gene 194754 196969 . + . ID=Phyra94018;biotype=protein_coding;external_name=C_scaffold_11000042;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 194754 196969 . + . ID=Phyra94018;Parent=Phyra94018;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 194754 194980 . + 0 ID=Phyra94018;Parent=Phyra94018;rank=1 scaffold_11 . exon 194754 194980 . + . ID=Phyra94018.1;Parent=Phyra94018;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 195054 195155 . + 0 ID=Phyra94018;Parent=Phyra94018;rank=2 scaffold_11 . exon 195054 195155 . + . ID=Phyra94018.2;Parent=Phyra94018;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . CDS 195234 195310 . + 0 ID=Phyra94018;Parent=Phyra94018;rank=3 scaffold_11 . exon 195234 195310 . + . ID=Phyra94018.3;Parent=Phyra94018;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 195398 195508 . + 0 ID=Phyra94018;Parent=Phyra94018;rank=4 scaffold_11 . exon 195398 195508 . + . ID=Phyra94018.4;Parent=Phyra94018;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 195602 195752 . + 0 ID=Phyra94018;Parent=Phyra94018;rank=5 scaffold_11 . exon 195602 195752 . + . ID=Phyra94018.5;Parent=Phyra94018;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_11 . CDS 195781 195809 . + 0 ID=Phyra94018;Parent=Phyra94018;rank=6 scaffold_11 . exon 195781 195809 . + . ID=Phyra94018.6;Parent=Phyra94018;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_11 . CDS 195886 195969 . + 0 ID=Phyra94018;Parent=Phyra94018;rank=7 scaffold_11 . exon 195886 195969 . + . ID=Phyra94018.7;Parent=Phyra94018;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_11 . CDS 196087 196216 . + 0 ID=Phyra94018;Parent=Phyra94018;rank=8 scaffold_11 . exon 196087 196216 . + . ID=Phyra94018.8;Parent=Phyra94018;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_11 . CDS 196286 196509 . + 0 ID=Phyra94018;Parent=Phyra94018;rank=9 scaffold_11 . exon 196286 196509 . + . ID=Phyra94018.9;Parent=Phyra94018;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_11 . CDS 196589 196707 . + 0 ID=Phyra94018;Parent=Phyra94018;rank=10 scaffold_11 . exon 196589 196707 . + . ID=Phyra94018.10;Parent=Phyra94018;constitutive=1;ensembl_phase=1;rank=10 scaffold_11 . CDS 196786 196935 . + 0 ID=Phyra94018;Parent=Phyra94018;rank=11 scaffold_11 . exon 196786 196935 . + . ID=Phyra94018.11;Parent=Phyra94018;constitutive=1;rank=11 scaffold_11 . CDS 196955 196969 . + 0 ID=Phyra94018;Parent=Phyra94018;rank=12 scaffold_11 . exon 196955 196969 . + . ID=Phyra94018.12;Parent=Phyra94018;constitutive=1;rank=12 scaffold_11 ensembl protein_coding_gene 200534 200869 . - . ID=Phyra39564;biotype=protein_coding;external_name=gwEuk.11.10.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 200534 200869 . - . ID=Phyra39564;Parent=Phyra39564;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 200534 200702 . - 0 ID=Phyra39564;Parent=Phyra39564;rank=2 scaffold_11 . exon 200534 200702 . - . ID=Phyra39564.2;Parent=Phyra39564;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 200778 200869 . - 0 ID=Phyra39564;Parent=Phyra39564;rank=1 scaffold_11 . exon 200778 200869 . - . ID=Phyra39564.1;Parent=Phyra39564;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . exon 198327 198445 . - . ID=Phyra75064.2;Parent=Phyra75064;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . exon 198520 198653 . - . ID=Phyra75064.1;Parent=Phyra75064;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 199588 200419 . + . ID=Phyra75065;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000077;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 199588 200419 . + . ID=Phyra75065;Parent=Phyra75065;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 199588 199999 . + 0 ID=Phyra75065;Parent=Phyra75065;rank=1 scaffold_11 . exon 199588 199999 . + . ID=Phyra75065.1;Parent=Phyra75065;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 200052 200200 . + 0 ID=Phyra75065;Parent=Phyra75065;rank=2 scaffold_11 . exon 200052 200200 . + . ID=Phyra75065.2;Parent=Phyra75065;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 200264 200419 . + 0 ID=Phyra75065;Parent=Phyra75065;rank=3 scaffold_11 . exon 200264 200419 . + . ID=Phyra75065.3;Parent=Phyra75065;constitutive=1;rank=3 scaffold_11 ensembl protein_coding_gene 203615 204058 . - . ID=Phyra75066;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000078;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 203615 204058 . - . ID=Phyra75066;Parent=Phyra75066;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 203615 204058 . - 0 ID=Phyra75066;Parent=Phyra75066;rank=1 scaffold_11 . exon 203615 204058 . - . ID=Phyra75066.1;Parent=Phyra75066;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 206884 208647 . + . ID=Phyra94022;biotype=protein_coding;external_name=C_scaffold_11000046;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 206884 208647 . + . ID=Phyra94022;Parent=Phyra94022;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 206884 207534 . + 0 ID=Phyra94022;Parent=Phyra94022;rank=1 scaffold_11 . exon 206884 207534 . + . ID=Phyra94022.1;Parent=Phyra94022;constitutive=1;rank=1 scaffold_11 . CDS 207568 208647 . + 0 ID=Phyra94022;Parent=Phyra94022;rank=2 scaffold_11 . exon 207568 208647 . + . ID=Phyra94022.2;Parent=Phyra94022;constitutive=1;rank=2 scaffold_11 . biological_region 210472 210473 0.999 + . logic_name=eponine scaffold_11 . biological_region 210691 210695 0.999 + . logic_name=eponine scaffold_11 . biological_region 215492 215493 0.999 + . logic_name=eponine scaffold_11 . repeat_region 216184 216191 . ? . description=dust scaffold_11 ensembl protein_coding_gene 214243 214627 . - . ID=Phyra39570;biotype=protein_coding;external_name=gwEuk.11.16.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 214243 214627 . - . ID=Phyra39570;Parent=Phyra39570;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 214243 214467 . - 0 ID=Phyra39570;Parent=Phyra39570;rank=2 scaffold_11 . exon 214243 214467 . - . ID=Phyra39570.2;Parent=Phyra39570;constitutive=1;rank=2 scaffold_11 . CDS 214544 214627 . - 0 ID=Phyra39570;Parent=Phyra39570;rank=1 scaffold_11 . exon 214544 214627 . - . ID=Phyra39570.1;Parent=Phyra39570;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 208718 209997 . - . ID=Phyra75068;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000080;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 208718 209997 . - . ID=Phyra75068;Parent=Phyra75068;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 208718 209358 . - 0 ID=Phyra75068;Parent=Phyra75068;rank=3 scaffold_11 . exon 208718 209358 . - . ID=Phyra75068.3;Parent=Phyra75068;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 209394 209479 . - 0 ID=Phyra75068;Parent=Phyra75068;rank=2 scaffold_11 . exon 209394 209479 . - . ID=Phyra75068.2;Parent=Phyra75068;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 209546 209997 . - 0 ID=Phyra75068;Parent=Phyra75068;rank=1 scaffold_11 . exon 209546 209997 . - . ID=Phyra75068.1;Parent=Phyra75068;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 210367 211083 . + . ID=Phyra75069;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000081;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 210367 211083 . + . ID=Phyra75069;Parent=Phyra75069;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 210367 211083 . + 0 ID=Phyra75069;Parent=Phyra75069;rank=1 scaffold_11 . exon 210367 211083 . + . ID=Phyra75069.1;Parent=Phyra75069;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 211247 212139 . - . ID=Phyra75070;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000082;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 211247 212139 . - . ID=Phyra75070;Parent=Phyra75070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 211247 211497 . - 0 ID=Phyra75070;Parent=Phyra75070;rank=5 scaffold_11 . exon 211247 211497 . - . ID=Phyra75070.5;Parent=Phyra75070;constitutive=1;ensembl_phase=1;rank=5 scaffold_11 . CDS 211569 211698 . - 0 ID=Phyra75070;Parent=Phyra75070;rank=4 scaffold_11 . exon 211569 211698 . - . ID=Phyra75070.4;Parent=Phyra75070;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_11 . CDS 211773 211910 . - 0 ID=Phyra75070;Parent=Phyra75070;rank=3 scaffold_11 . exon 211773 211910 . - . ID=Phyra75070.3;Parent=Phyra75070;constitutive=1;rank=3 scaffold_11 . CDS 211942 211964 . - 0 ID=Phyra75070;Parent=Phyra75070;rank=2 scaffold_11 . exon 211942 211964 . - . ID=Phyra75070.2;Parent=Phyra75070;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 212052 212139 . - 0 ID=Phyra75070;Parent=Phyra75070;rank=1 scaffold_11 . exon 212052 212139 . - . ID=Phyra75070.1;Parent=Phyra75070;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 212303 213504 . + . ID=Phyra75071;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000083;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 212303 213504 . + . ID=Phyra75071;Parent=Phyra75071;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 212303 212418 . + 0 ID=Phyra75071;Parent=Phyra75071;rank=1 scaffold_11 . exon 212303 212418 . + . ID=Phyra75071.1;Parent=Phyra75071;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 212485 212568 . + 0 ID=Phyra75071;Parent=Phyra75071;rank=2 scaffold_11 . exon 212485 212568 . + . ID=Phyra75071.2;Parent=Phyra75071;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . CDS 212631 212737 . + 0 ID=Phyra75071;Parent=Phyra75071;rank=3 scaffold_11 . exon 212631 212737 . + . ID=Phyra75071.3;Parent=Phyra75071;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 212820 213044 . + 0 ID=Phyra75071;Parent=Phyra75071;rank=4 scaffold_11 . exon 212820 213044 . + . ID=Phyra75071.4;Parent=Phyra75071;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 213221 213504 . + 0 ID=Phyra75071;Parent=Phyra75071;rank=5 scaffold_11 . exon 213221 213504 . + . ID=Phyra75071.5;Parent=Phyra75071;constitutive=1;ensembl_phase=1;rank=5 scaffold_11 ensembl protein_coding_gene 213799 214153 . + . ID=Phyra94024;biotype=protein_coding;external_name=C_scaffold_11000048;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 213799 214153 . + . ID=Phyra94024;Parent=Phyra94024;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 213799 214067 . + 0 ID=Phyra94024;Parent=Phyra94024;rank=1 scaffold_11 . exon 213799 214067 . + . ID=Phyra94024.1;Parent=Phyra94024;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 214123 214153 . + 0 ID=Phyra94024;Parent=Phyra94024;rank=2 scaffold_11 . exon 214123 214153 . + . ID=Phyra94024.2;Parent=Phyra94024;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 ensembl protein_coding_gene 214990 218266 . - . ID=Phyra94026;biotype=protein_coding;external_name=C_scaffold_11000050;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 214990 218266 . - . ID=Phyra94026;Parent=Phyra94026;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 214990 215644 . - 0 ID=Phyra94026;Parent=Phyra94026;rank=6 scaffold_11 . exon 214990 215644 . - . ID=Phyra94026.6;Parent=Phyra94026;constitutive=1;ensembl_phase=2;rank=6 scaffold_11 . CDS 215717 215814 . - 0 ID=Phyra94026;Parent=Phyra94026;rank=5 scaffold_11 . exon 215717 215814 . - . ID=Phyra94026.5;Parent=Phyra94026;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_11 . CDS 216366 216431 . - 0 ID=Phyra94026;Parent=Phyra94026;rank=4 scaffold_11 . exon 216366 216431 . - . ID=Phyra94026.4;Parent=Phyra94026;constitutive=1;rank=4 scaffold_11 . CDS 216509 217971 . - 0 ID=Phyra94026;Parent=Phyra94026;rank=3 scaffold_11 . exon 216509 217971 . - . ID=Phyra94026.3;Parent=Phyra94026;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 218023 218135 . - 0 ID=Phyra94026;Parent=Phyra94026;rank=2 scaffold_11 . CDS 218190 218266 . - 0 ID=Phyra94026;Parent=Phyra94026;rank=1 scaffold_11 . repeat_region 217947 217966 . ? . description=trf scaffold_11 . repeat_region 218863 218892 . ? . description=trf scaffold_11 . repeat_region 218902 218961 . ? . description=trf scaffold_11 . repeat_region 219195 219231 . ? . description=trf scaffold_11 . repeat_region 219315 219350 . ? . description=trf scaffold_11 . repeat_region 220866 220923 . ? . description=trf scaffold_11 . repeat_region 222209 222265 . ? . description=trf scaffold_11 . repeat_region 223775 223832 . ? . description=trf scaffold_11 . repeat_region 225074 225103 . ? . description=trf scaffold_11 . repeat_region 225074 225110 . ? . description=trf scaffold_11 . repeat_region 225237 225343 . ? . description=trf scaffold_11 . repeat_region 225263 225475 . ? . description=trf scaffold_11 . repeat_region 225270 225475 . ? . description=trf scaffold_11 . repeat_region 225278 225470 . ? . description=trf scaffold_11 . repeat_region 225342 225460 . ? . description=trf scaffold_11 ensembl protein_coding_gene 218850 219398 . - . ID=Phyra75074;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000086;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 218850 219398 . - . ID=Phyra75074;Parent=Phyra75074;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 218850 219398 . - 0 ID=Phyra75074;Parent=Phyra75074;rank=1 scaffold_11 . exon 218850 219398 . - . ID=Phyra75074.1;Parent=Phyra75074;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 225119 227083 . + . ID=Phyra75075;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000087;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 225119 227083 . + . ID=Phyra75075;Parent=Phyra75075;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 225119 225178 . + 0 ID=Phyra75075;Parent=Phyra75075;rank=1 scaffold_11 . exon 225119 225178 . + . ID=Phyra75075.1;Parent=Phyra75075;constitutive=1;rank=1 scaffold_11 . CDS 225208 225460 . + 0 ID=Phyra75075;Parent=Phyra75075;rank=2 scaffold_11 . exon 225208 225460 . + . ID=Phyra75075.2;Parent=Phyra75075;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 225615 227083 . + 0 ID=Phyra75075;Parent=Phyra75075;rank=3 scaffold_11 . exon 225615 227083 . + . ID=Phyra75075.3;Parent=Phyra75075;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 ensembl protein_coding_gene 227247 228282 . - . ID=Phyra75076;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000088;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 227247 228282 . - . ID=Phyra75076;Parent=Phyra75076;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 227247 227685 . - 0 ID=Phyra75076;Parent=Phyra75076;rank=3 scaffold_11 . exon 227247 227685 . - . ID=Phyra75076.3;Parent=Phyra75076;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 227759 227818 . - 0 ID=Phyra75076;Parent=Phyra75076;rank=2 scaffold_11 . exon 227759 227818 . - . ID=Phyra75076.2;Parent=Phyra75076;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . CDS 227888 228282 . - 0 ID=Phyra75076;Parent=Phyra75076;rank=1 scaffold_11 . exon 218023 218135 . - . ID=Phyra94026.2;Parent=Phyra94026;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . exon 218190 218266 . - . ID=Phyra94026.1;Parent=Phyra94026;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . biological_region 228776 228778 0.999 + . logic_name=eponine scaffold_11 . biological_region 233041 233044 0.999 + . logic_name=eponine scaffold_11 . repeat_region 233610 233647 . ? . description=dust scaffold_11 . biological_region 234101 234104 0.999 + . logic_name=eponine scaffold_11 . biological_region 234104 234109 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 228520 229297 . + . ID=Phyra71276;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000011;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 228520 229297 . + . ID=Phyra71276;Parent=Phyra71276;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 228520 228833 . + 0 ID=Phyra71276;Parent=Phyra71276;rank=1 scaffold_11 . exon 228520 228833 . + . ID=Phyra71276.1;Parent=Phyra71276;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 228924 228984 . + 0 ID=Phyra71276;Parent=Phyra71276;rank=2 scaffold_11 . exon 228924 228984 . + . ID=Phyra71276.2;Parent=Phyra71276;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 229055 229297 . + 0 ID=Phyra71276;Parent=Phyra71276;rank=3 scaffold_11 . exon 229055 229297 . + . ID=Phyra71276.3;Parent=Phyra71276;constitutive=1;rank=3 scaffold_11 . exon 227888 228282 . - . ID=Phyra75076.1;Parent=Phyra75076;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 229599 230224 . - . ID=Phyra75078;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000090;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 229599 230224 . - . ID=Phyra75078;Parent=Phyra75078;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 229599 229787 . - 0 ID=Phyra75078;Parent=Phyra75078;rank=2 scaffold_11 . exon 229599 229787 . - . ID=Phyra75078.2;Parent=Phyra75078;constitutive=1;rank=2 scaffold_11 . CDS 229859 230224 . - 0 ID=Phyra75078;Parent=Phyra75078;rank=1 scaffold_11 . exon 229859 230224 . - . ID=Phyra75078.1;Parent=Phyra75078;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 230407 232482 . + . ID=Phyra75079;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000091;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 230407 232482 . + . ID=Phyra75079;Parent=Phyra75079;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 230407 230462 . + 0 ID=Phyra75079;Parent=Phyra75079;rank=1 scaffold_11 . exon 230407 230462 . + . ID=Phyra75079.1;Parent=Phyra75079;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 230551 230721 . + 0 ID=Phyra75079;Parent=Phyra75079;rank=2 scaffold_11 . exon 230551 230721 . + . ID=Phyra75079.2;Parent=Phyra75079;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . CDS 230795 230948 . + 0 ID=Phyra75079;Parent=Phyra75079;rank=3 scaffold_11 . exon 230795 230948 . + . ID=Phyra75079.3;Parent=Phyra75079;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 231165 232413 . + 0 ID=Phyra75079;Parent=Phyra75079;rank=4 scaffold_11 . exon 231165 232413 . + . ID=Phyra75079.4;Parent=Phyra75079;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_11 . CDS 232442 232482 . + 0 ID=Phyra75079;Parent=Phyra75079;rank=5 scaffold_11 . exon 232442 232482 . + . ID=Phyra75079.5;Parent=Phyra75079;constitutive=1;ensembl_phase=1;rank=5 scaffold_11 ensembl protein_coding_gene 232972 233745 . - . ID=Phyra75080;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000092;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 232972 233745 . - . ID=Phyra75080;Parent=Phyra75080;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 232972 233535 . - 0 ID=Phyra75080;Parent=Phyra75080;rank=2 scaffold_11 . exon 232972 233535 . - . ID=Phyra75080.2;Parent=Phyra75080;constitutive=1;rank=2 scaffold_11 . CDS 233608 233745 . - 0 ID=Phyra75080;Parent=Phyra75080;rank=1 scaffold_11 . exon 233608 233745 . - . ID=Phyra75080.1;Parent=Phyra75080;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 234025 236130 . + . ID=Phyra75081;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000093;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 234025 236130 . + . ID=Phyra75081;Parent=Phyra75081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 234025 234123 . + 0 ID=Phyra75081;Parent=Phyra75081;rank=1 scaffold_11 . exon 234025 234123 . + . ID=Phyra75081.1;Parent=Phyra75081;constitutive=1;rank=1 scaffold_11 . CDS 234189 234284 . + 0 ID=Phyra75081;Parent=Phyra75081;rank=2 scaffold_11 . exon 234189 234284 . + . ID=Phyra75081.2;Parent=Phyra75081;constitutive=1;rank=2 scaffold_11 . CDS 234373 234601 . + 0 ID=Phyra75081;Parent=Phyra75081;rank=3 scaffold_11 . exon 234373 234601 . + . ID=Phyra75081.3;Parent=Phyra75081;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . CDS 234666 234738 . + 0 ID=Phyra75081;Parent=Phyra75081;rank=4 scaffold_11 . exon 234666 234738 . + . ID=Phyra75081.4;Parent=Phyra75081;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_11 . CDS 234987 235614 . + 0 ID=Phyra75081;Parent=Phyra75081;rank=5 scaffold_11 . exon 234987 235614 . + . ID=Phyra75081.5;Parent=Phyra75081;constitutive=1;ensembl_phase=2;rank=5 scaffold_11 . CDS 235686 235829 . + 0 ID=Phyra75081;Parent=Phyra75081;rank=6 scaffold_11 . exon 235686 235829 . + . ID=Phyra75081.6;Parent=Phyra75081;constitutive=1;rank=6 scaffold_11 . CDS 235858 236130 . + 0 ID=Phyra75081;Parent=Phyra75081;rank=7 scaffold_11 . exon 235858 236130 . + . ID=Phyra75081.7;Parent=Phyra75081;constitutive=1;rank=7 scaffold_11 . repeat_region 240262 240319 . ? . description=trf scaffold_11 . repeat_region 240298 240322 . ? . description=trf scaffold_11 ensembl protein_coding_gene 238358 239089 . + . ID=Phyra75082;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000094;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 238358 239089 . + . ID=Phyra75082;Parent=Phyra75082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 238358 238483 . + 0 ID=Phyra75082;Parent=Phyra75082;rank=1 scaffold_11 . exon 238358 238483 . + . ID=Phyra75082.1;Parent=Phyra75082;constitutive=1;rank=1 scaffold_11 . CDS 238562 239089 . + 0 ID=Phyra75082;Parent=Phyra75082;rank=2 scaffold_11 . exon 238562 239089 . + . ID=Phyra75082.2;Parent=Phyra75082;constitutive=1;rank=2 scaffold_11 ensembl protein_coding_gene 239390 240406 . - . ID=Phyra75083;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000095;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 239390 240406 . - . ID=Phyra75083;Parent=Phyra75083;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 239390 240406 . - 0 ID=Phyra75083;Parent=Phyra75083;rank=1 scaffold_11 . exon 239390 240406 . - . ID=Phyra75083.1;Parent=Phyra75083;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 242516 244123 . - . ID=Phyra75084;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000096;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 242516 244123 . - . ID=Phyra75084;Parent=Phyra75084;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 242516 242614 . - 0 ID=Phyra75084;Parent=Phyra75084;rank=4 scaffold_11 . exon 242516 242614 . - . ID=Phyra75084.4;Parent=Phyra75084;constitutive=1;rank=4 scaffold_11 . CDS 242689 242842 . - 0 ID=Phyra75084;Parent=Phyra75084;rank=3 scaffold_11 . exon 242689 242842 . - . ID=Phyra75084.3;Parent=Phyra75084;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 242916 243233 . - 0 ID=Phyra75084;Parent=Phyra75084;rank=2 scaffold_11 . exon 242916 243233 . - . ID=Phyra75084.2;Parent=Phyra75084;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . CDS 243258 244123 . - 0 ID=Phyra75084;Parent=Phyra75084;rank=1 scaffold_11 . exon 243258 244123 . - . ID=Phyra75084.1;Parent=Phyra75084;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 244529 248368 . + . ID=Phyra75085;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000097;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 244529 248368 . + . ID=Phyra75085;Parent=Phyra75085;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 244529 245589 . + 0 ID=Phyra75085;Parent=Phyra75085;rank=1 scaffold_11 . exon 244529 245589 . + . ID=Phyra75085.1;Parent=Phyra75085;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 245658 245747 . + 0 ID=Phyra75085;Parent=Phyra75085;rank=2 scaffold_11 . exon 245658 245747 . + . ID=Phyra75085.2;Parent=Phyra75085;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . CDS 245837 246470 . + 0 ID=Phyra75085;Parent=Phyra75085;rank=3 scaffold_11 . exon 245837 246470 . + . ID=Phyra75085.3;Parent=Phyra75085;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 246522 246698 . + 0 ID=Phyra75085;Parent=Phyra75085;rank=4 scaffold_11 . exon 246522 246698 . + . ID=Phyra75085.4;Parent=Phyra75085;constitutive=1;rank=4 scaffold_11 . CDS 246767 246869 . + 0 ID=Phyra75085;Parent=Phyra75085;rank=5 scaffold_11 . exon 246767 246869 . + . ID=Phyra75085.5;Parent=Phyra75085;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_11 . CDS 246891 248368 . + 0 ID=Phyra75085;Parent=Phyra75085;rank=6 scaffold_11 . exon 246891 248368 . + . ID=Phyra75085.6;Parent=Phyra75085;constitutive=1;ensembl_phase=1;rank=6 scaffold_11 . biological_region 247814 247814 0.999 - . logic_name=eponine scaffold_11 . biological_region 253669 253674 0.999 + . logic_name=eponine scaffold_11 . biological_region 255093 255095 0.999 - . logic_name=eponine scaffold_11 . repeat_region 257015 257650 . ? . description=dust scaffold_11 ensembl protein_coding_gene 253577 255823 . + . ID=Phyra71277;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000012;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 253577 255823 . + . ID=Phyra71277;Parent=Phyra71277;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 253577 255823 . + 0 ID=Phyra71277;Parent=Phyra71277;rank=1 scaffold_11 . exon 253577 255823 . + . ID=Phyra71277.1;Parent=Phyra71277;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 249163 251042 . + . ID=Phyra75086;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000098;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 249163 251042 . + . ID=Phyra75086;Parent=Phyra75086;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 249163 249345 . + 0 ID=Phyra75086;Parent=Phyra75086;rank=1 scaffold_11 . exon 249163 249345 . + . ID=Phyra75086.1;Parent=Phyra75086;constitutive=1;rank=1 scaffold_11 . CDS 249436 250668 . + 0 ID=Phyra75086;Parent=Phyra75086;rank=2 scaffold_11 . exon 249436 250668 . + . ID=Phyra75086.2;Parent=Phyra75086;constitutive=1;rank=2 scaffold_11 . CDS 250688 250699 . + 0 ID=Phyra75086;Parent=Phyra75086;rank=3 scaffold_11 . exon 250688 250699 . + . ID=Phyra75086.3;Parent=Phyra75086;constitutive=1;rank=3 scaffold_11 . CDS 250965 251042 . + 0 ID=Phyra75086;Parent=Phyra75086;rank=4 scaffold_11 . exon 250965 251042 . + . ID=Phyra75086.4;Parent=Phyra75086;constitutive=1;rank=4 scaffold_11 ensembl protein_coding_gene 251296 253437 . - . ID=Phyra75087;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000099;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 251296 253437 . - . ID=Phyra75087;Parent=Phyra75087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 251296 253437 . - 0 ID=Phyra75087;Parent=Phyra75087;rank=1 scaffold_11 . exon 251296 253437 . - . ID=Phyra75087.1;Parent=Phyra75087;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 256064 256807 . - . ID=Phyra75089;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000101;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 256064 256807 . - . ID=Phyra75089;Parent=Phyra75089;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 256064 256807 . - 0 ID=Phyra75089;Parent=Phyra75089;rank=1 scaffold_11 . exon 256064 256807 . - . ID=Phyra75089.1;Parent=Phyra75089;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 266098 266673 . - . ID=Phyra39600;biotype=protein_coding;external_name=gwEuk.11.46.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 266098 266673 . - . ID=Phyra39600;Parent=Phyra39600;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 266098 266673 . - 0 ID=Phyra39600;Parent=Phyra39600;rank=1 scaffold_11 . exon 266098 266673 . - . ID=Phyra39600.1;Parent=Phyra39600;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 262497 263099 . + . ID=Phyra71278;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000013;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 262497 263099 . + . ID=Phyra71278;Parent=Phyra71278;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 262497 262621 . + 0 ID=Phyra71278;Parent=Phyra71278;rank=1 scaffold_11 . exon 262497 262621 . + . ID=Phyra71278.1;Parent=Phyra71278;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 262694 262809 . + 0 ID=Phyra71278;Parent=Phyra71278;rank=2 scaffold_11 . exon 262694 262809 . + . ID=Phyra71278.2;Parent=Phyra71278;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 262879 263099 . + 0 ID=Phyra71278;Parent=Phyra71278;rank=3 scaffold_11 . exon 262879 263099 . + . ID=Phyra71278.3;Parent=Phyra71278;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 ensembl protein_coding_gene 257856 259283 . - . ID=Phyra75090;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000102;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 257856 259283 . - . ID=Phyra75090;Parent=Phyra75090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 257856 259283 . - 0 ID=Phyra75090;Parent=Phyra75090;rank=1 scaffold_11 . exon 257856 259283 . - . ID=Phyra75090.1;Parent=Phyra75090;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 261636 262255 . - . ID=Phyra75092;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000104;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 261636 262255 . - . ID=Phyra75092;Parent=Phyra75092;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 261636 261805 . - 0 ID=Phyra75092;Parent=Phyra75092;rank=3 scaffold_11 . exon 261636 261805 . - . ID=Phyra75092.3;Parent=Phyra75092;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 261921 262004 . - 0 ID=Phyra75092;Parent=Phyra75092;rank=2 scaffold_11 . exon 261921 262004 . - . ID=Phyra75092.2;Parent=Phyra75092;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 262117 262255 . - 0 ID=Phyra75092;Parent=Phyra75092;rank=1 scaffold_11 . exon 262117 262255 . - . ID=Phyra75092.1;Parent=Phyra75092;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 263498 265036 . - . ID=Phyra75094;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000106;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 263498 265036 . - . ID=Phyra75094;Parent=Phyra75094;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 263498 265036 . - 0 ID=Phyra75094;Parent=Phyra75094;rank=1 scaffold_11 . exon 263498 265036 . - . ID=Phyra75094.1;Parent=Phyra75094;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 267114 268559 . + . ID=Phyra75096;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000108;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 267114 268559 . + . ID=Phyra75096;Parent=Phyra75096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 267114 268559 . + 0 ID=Phyra75096;Parent=Phyra75096;rank=1 scaffold_11 . exon 267114 268559 . + . ID=Phyra75096.1;Parent=Phyra75096;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 260296 261222 . + . ID=Phyra94029;biotype=protein_coding;external_name=C_scaffold_11000053;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 260296 261222 . + . ID=Phyra94029;Parent=Phyra94029;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 260296 261222 . + 0 ID=Phyra94029;Parent=Phyra94029;rank=1 scaffold_11 . exon 260296 261222 . + . ID=Phyra94029.1;Parent=Phyra94029;constitutive=1;rank=1 scaffold_11 . biological_region 267664 267667 0.999 - . logic_name=eponine scaffold_11 . repeat_region 268769 268776 . ? . description=dust scaffold_11 . biological_region 269560 269561 0.999 + . logic_name=eponine scaffold_11 . repeat_region 273210 273234 . ? . description=trf scaffold_11 . biological_region 273846 273850 0.999 + . logic_name=eponine scaffold_11 . repeat_region 274439 274448 . ? . description=dust scaffold_11 . repeat_region 274880 274926 . ? . description=trf scaffold_11 . biological_region 275059 275060 0.999 - . logic_name=eponine scaffold_11 . biological_region 275353 275356 0.999 + . logic_name=eponine scaffold_11 . biological_region 276723 276724 0.999 + . logic_name=eponine scaffold_11 . biological_region 276744 276748 0.999 + . logic_name=eponine scaffold_11 . biological_region 276807 276810 0.999 - . logic_name=eponine scaffold_11 . biological_region 276836 276840 0.999 - . logic_name=eponine scaffold_11 . biological_region 276944 276948 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 270174 270873 . - . ID=Phyra71279;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000014;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 270174 270873 . - . ID=Phyra71279;Parent=Phyra71279;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 270174 270593 . - 0 ID=Phyra71279;Parent=Phyra71279;rank=3 scaffold_11 . exon 270174 270593 . - . ID=Phyra71279.3;Parent=Phyra71279;constitutive=1;rank=3 scaffold_11 . CDS 270657 270725 . - 0 ID=Phyra71279;Parent=Phyra71279;rank=2 scaffold_11 . exon 270657 270725 . - . ID=Phyra71279.2;Parent=Phyra71279;constitutive=1;rank=2 scaffold_11 . CDS 270799 270873 . - 0 ID=Phyra71279;Parent=Phyra71279;rank=1 scaffold_11 . exon 270799 270873 . - . ID=Phyra71279.1;Parent=Phyra71279;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 268837 269996 . + . ID=Phyra75097;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000109;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 268837 269996 . + . ID=Phyra75097;Parent=Phyra75097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 268837 268848 . + 0 ID=Phyra75097;Parent=Phyra75097;rank=1 scaffold_11 . exon 268837 268848 . + . ID=Phyra75097.1;Parent=Phyra75097;constitutive=1;rank=1 scaffold_11 . CDS 268997 269821 . + 0 ID=Phyra75097;Parent=Phyra75097;rank=2 scaffold_11 . exon 268997 269821 . + . ID=Phyra75097.2;Parent=Phyra75097;constitutive=1;rank=2 scaffold_11 . CDS 269910 269996 . + 0 ID=Phyra75097;Parent=Phyra75097;rank=3 scaffold_11 . exon 269910 269996 . + . ID=Phyra75097.3;Parent=Phyra75097;constitutive=1;rank=3 scaffold_11 ensembl protein_coding_gene 275324 276172 . - . ID=Phyra75100;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000112;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 275324 276172 . - . ID=Phyra75100;Parent=Phyra75100;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 275324 275684 . - 0 ID=Phyra75100;Parent=Phyra75100;rank=4 scaffold_11 . exon 275324 275684 . - . ID=Phyra75100.4;Parent=Phyra75100;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 275750 275956 . - 0 ID=Phyra75100;Parent=Phyra75100;rank=3 scaffold_11 . exon 275750 275956 . - . ID=Phyra75100.3;Parent=Phyra75100;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_11 . CDS 276018 276099 . - 0 ID=Phyra75100;Parent=Phyra75100;rank=2 scaffold_11 . exon 276018 276099 . - . ID=Phyra75100.2;Parent=Phyra75100;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_11 . CDS 276157 276172 . - 0 ID=Phyra75100;Parent=Phyra75100;rank=1 scaffold_11 . exon 276157 276172 . - . ID=Phyra75100.1;Parent=Phyra75100;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 276311 277269 . + . ID=Phyra75101;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000113;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 276311 277269 . + . ID=Phyra75101;Parent=Phyra75101;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 276311 277015 . + 0 ID=Phyra75101;Parent=Phyra75101;rank=1 scaffold_11 . exon 276311 277015 . + . ID=Phyra75101.1;Parent=Phyra75101;constitutive=1;rank=1 scaffold_11 . CDS 277081 277269 . + 0 ID=Phyra75101;Parent=Phyra75101;rank=2 scaffold_11 . exon 277081 277269 . + . ID=Phyra75101.2;Parent=Phyra75101;constitutive=1;rank=2 scaffold_11 ensembl protein_coding_gene 271110 272858 . + . ID=Phyra94035;biotype=protein_coding;external_name=C_scaffold_11000059;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 271110 272858 . + . ID=Phyra94035;Parent=Phyra94035;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 271110 271200 . + 0 ID=Phyra94035;Parent=Phyra94035;rank=1 scaffold_11 . exon 271110 271200 . + . ID=Phyra94035.1;Parent=Phyra94035;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 271306 271523 . + 0 ID=Phyra94035;Parent=Phyra94035;rank=2 scaffold_11 . exon 271306 271523 . + . ID=Phyra94035.2;Parent=Phyra94035;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 271620 272858 . + 0 ID=Phyra94035;Parent=Phyra94035;rank=3 scaffold_11 . exon 271620 272858 . + . ID=Phyra94035.3;Parent=Phyra94035;constitutive=1;rank=3 scaffold_11 ensembl protein_coding_gene 277491 279176 . - . ID=Phyra75102;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000114;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 277491 279176 . - . ID=Phyra75102;Parent=Phyra75102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 277491 279176 . - 0 ID=Phyra75102;Parent=Phyra75102;rank=1 scaffold_11 . exon 277491 279176 . - . ID=Phyra75102.1;Parent=Phyra75102;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 279810 280453 . + . ID=Phyra75103;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000115;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 279810 280453 . + . ID=Phyra75103;Parent=Phyra75103;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 279810 280087 . + 0 ID=Phyra75103;Parent=Phyra75103;rank=1 scaffold_11 . exon 279810 280087 . + . ID=Phyra75103.1;Parent=Phyra75103;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 280154 280206 . + 0 ID=Phyra75103;Parent=Phyra75103;rank=2 scaffold_11 . exon 280154 280206 . + . ID=Phyra75103.2;Parent=Phyra75103;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 280269 280453 . + 0 ID=Phyra75103;Parent=Phyra75103;rank=3 scaffold_11 . exon 280269 280453 . + . ID=Phyra75103.3;Parent=Phyra75103;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 ensembl protein_coding_gene 280758 283090 . - . ID=Phyra75104;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000116;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 280758 283090 . - . ID=Phyra75104;Parent=Phyra75104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 280758 280833 . - 0 ID=Phyra75104;Parent=Phyra75104;rank=2 scaffold_11 . exon 280758 280833 . - . ID=Phyra75104.2;Parent=Phyra75104;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 280887 283090 . - 0 ID=Phyra75104;Parent=Phyra75104;rank=1 scaffold_11 . exon 280887 283090 . - . ID=Phyra75104.1;Parent=Phyra75104;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 283246 284649 . - . ID=Phyra75105;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000117;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 283246 284649 . - . ID=Phyra75105;Parent=Phyra75105;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 283246 284649 . - 0 ID=Phyra75105;Parent=Phyra75105;rank=1 scaffold_11 . exon 283246 284649 . - . ID=Phyra75105.1;Parent=Phyra75105;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 285996 287621 . - . ID=Phyra75106;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000118;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 285996 287621 . - . ID=Phyra75106;Parent=Phyra75106;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 285996 287621 . - 0 ID=Phyra75106;Parent=Phyra75106;rank=1 scaffold_11 . exon 285996 287621 . - . ID=Phyra75106.1;Parent=Phyra75106;constitutive=1;rank=1 scaffold_11 . biological_region 289737 289738 0.999 + . logic_name=eponine scaffold_11 . biological_region 289889 289889 0.999 + . logic_name=eponine scaffold_11 . biological_region 291419 291422 0.999 - . logic_name=eponine scaffold_11 . repeat_region 291739 291770 . ? . description=trf scaffold_11 . repeat_region 291794 291819 . ? . description=trf scaffold_11 . repeat_region 296112 296172 . ? . description=trf scaffold_11 . repeat_region 296112 296174 . ? . description=dust scaffold_11 ensembl protein_coding_gene 294546 294863 . + . ID=Phyra71280;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000015;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 294546 294863 . + . ID=Phyra71280;Parent=Phyra71280;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 294546 294863 . + 0 ID=Phyra71280;Parent=Phyra71280;rank=1 scaffold_11 . exon 294546 294863 . + . ID=Phyra71280.1;Parent=Phyra71280;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 288407 291478 . - . ID=Phyra75107;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000119;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 288407 291478 . - . ID=Phyra75107;Parent=Phyra75107;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 288407 291478 . - 0 ID=Phyra75107;Parent=Phyra75107;rank=1 scaffold_11 . exon 288407 291478 . - . ID=Phyra75107.1;Parent=Phyra75107;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 291635 292327 . + . ID=Phyra75108;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000120;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 291635 292327 . + . ID=Phyra75108;Parent=Phyra75108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 291635 292208 . + 0 ID=Phyra75108;Parent=Phyra75108;rank=1 scaffold_11 . exon 291635 292208 . + . ID=Phyra75108.1;Parent=Phyra75108;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 292278 292327 . + 0 ID=Phyra75108;Parent=Phyra75108;rank=2 scaffold_11 . exon 292278 292327 . + . ID=Phyra75108.2;Parent=Phyra75108;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 ensembl protein_coding_gene 295017 296045 . - . ID=Phyra75112;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000124;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 295017 296045 . - . ID=Phyra75112;Parent=Phyra75112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 295017 296045 . - 0 ID=Phyra75112;Parent=Phyra75112;rank=1 scaffold_11 . exon 295017 296045 . - . ID=Phyra75112.1;Parent=Phyra75112;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 296992 300267 . + . ID=Phyra75113;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000125;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 296992 300267 . + . ID=Phyra75113;Parent=Phyra75113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 296992 299415 . + 0 ID=Phyra75113;Parent=Phyra75113;rank=1 scaffold_11 . exon 296992 299415 . + . ID=Phyra75113.1;Parent=Phyra75113;constitutive=1;rank=1 scaffold_11 . CDS 299483 299548 . + 0 ID=Phyra75113;Parent=Phyra75113;rank=2 scaffold_11 . CDS 299621 299731 . + 0 ID=Phyra75113;Parent=Phyra75113;rank=3 scaffold_11 . CDS 299806 300267 . + 0 ID=Phyra75113;Parent=Phyra75113;rank=4 scaffold_11 ensembl protein_coding_gene 292437 294443 . - . ID=Phyra94039;biotype=protein_coding;external_name=C_scaffold_11000063;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 292437 294443 . - . ID=Phyra94039;Parent=Phyra94039;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 292437 292534 . - 0 ID=Phyra94039;Parent=Phyra94039;rank=9 scaffold_11 . exon 292437 292534 . - . ID=Phyra94039.9;Parent=Phyra94039;constitutive=1;ensembl_phase=1;rank=9 scaffold_11 . CDS 292559 292721 . - 0 ID=Phyra94039;Parent=Phyra94039;rank=8 scaffold_11 . exon 292559 292721 . - . ID=Phyra94039.8;Parent=Phyra94039;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_11 . CDS 292785 292909 . - 0 ID=Phyra94039;Parent=Phyra94039;rank=7 scaffold_11 . exon 292785 292909 . - . ID=Phyra94039.7;Parent=Phyra94039;constitutive=1;ensembl_phase=1;rank=7 scaffold_11 . CDS 293472 293658 . - 0 ID=Phyra94039;Parent=Phyra94039;rank=6 scaffold_11 . exon 293472 293658 . - . ID=Phyra94039.6;Parent=Phyra94039;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_11 . CDS 293732 293833 . - 0 ID=Phyra94039;Parent=Phyra94039;rank=5 scaffold_11 . exon 293732 293833 . - . ID=Phyra94039.5;Parent=Phyra94039;constitutive=1;rank=5 scaffold_11 . CDS 293911 293991 . - 0 ID=Phyra94039;Parent=Phyra94039;rank=4 scaffold_11 . exon 293911 293991 . - . ID=Phyra94039.4;Parent=Phyra94039;constitutive=1;rank=4 scaffold_11 . CDS 294056 294132 . - 0 ID=Phyra94039;Parent=Phyra94039;rank=3 scaffold_11 . exon 294056 294132 . - . ID=Phyra94039.3;Parent=Phyra94039;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 294212 294292 . - 0 ID=Phyra94039;Parent=Phyra94039;rank=2 scaffold_11 . exon 294212 294292 . - . ID=Phyra94039.2;Parent=Phyra94039;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 294371 294443 . - 0 ID=Phyra94039;Parent=Phyra94039;rank=1 scaffold_11 . exon 294371 294443 . - . ID=Phyra94039.1;Parent=Phyra94039;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . exon 299483 299548 . + . ID=Phyra75113.2;Parent=Phyra75113;constitutive=1;rank=2 scaffold_11 . exon 299621 299731 . + . ID=Phyra75113.3;Parent=Phyra75113;constitutive=1;rank=3 scaffold_11 . exon 299806 300267 . + . ID=Phyra75113.4;Parent=Phyra75113;constitutive=1;rank=4 scaffold_11 ensembl protein_coding_gene 300419 301200 . - . ID=Phyra75114;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000126;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 300419 301200 . - . ID=Phyra75114;Parent=Phyra75114;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 300419 300796 . - 0 ID=Phyra75114;Parent=Phyra75114;rank=3 scaffold_11 . exon 300419 300796 . - . ID=Phyra75114.3;Parent=Phyra75114;constitutive=1;rank=3 scaffold_11 . CDS 300868 300979 . - 0 ID=Phyra75114;Parent=Phyra75114;rank=2 scaffold_11 . exon 300868 300979 . - . ID=Phyra75114.2;Parent=Phyra75114;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 301049 301200 . - 0 ID=Phyra75114;Parent=Phyra75114;rank=1 scaffold_11 . exon 301049 301200 . - . ID=Phyra75114.1;Parent=Phyra75114;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 302012 303328 . - . ID=Phyra75115;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000127;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 302012 303328 . - . ID=Phyra75115;Parent=Phyra75115;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 302012 302373 . - 0 ID=Phyra75115;Parent=Phyra75115;rank=4 scaffold_11 . exon 302012 302373 . - . ID=Phyra75115.4;Parent=Phyra75115;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 302490 302782 . - 0 ID=Phyra75115;Parent=Phyra75115;rank=3 scaffold_11 . exon 302490 302782 . - . ID=Phyra75115.3;Parent=Phyra75115;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 302870 303035 . - 0 ID=Phyra75115;Parent=Phyra75115;rank=2 scaffold_11 . exon 302870 303035 . - . ID=Phyra75115.2;Parent=Phyra75115;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_11 . CDS 303241 303328 . - 0 ID=Phyra75115;Parent=Phyra75115;rank=1 scaffold_11 . exon 303241 303328 . - . ID=Phyra75115.1;Parent=Phyra75115;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 306165 306503 . + . ID=Phyra75116;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000128;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 306165 306503 . + . ID=Phyra75116;Parent=Phyra75116;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 306165 306503 . + 0 ID=Phyra75116;Parent=Phyra75116;rank=1 scaffold_11 . exon 306165 306503 . + . ID=Phyra75116.1;Parent=Phyra75116;constitutive=1;rank=1 scaffold_11 . repeat_region 307649 307656 . ? . description=dust scaffold_11 . biological_region 309603 309607 0.999 + . logic_name=eponine scaffold_11 . repeat_region 311032 311056 . ? . description=trf scaffold_11 . biological_region 311691 311694 0.999 - . logic_name=eponine scaffold_11 . biological_region 313447 313450 0.999 + . logic_name=eponine scaffold_11 . biological_region 313689 313689 0.999 + . logic_name=eponine scaffold_11 . biological_region 314012 314014 0.999 - . logic_name=eponine scaffold_11 . biological_region 315474 315476 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 307747 308235 . - . ID=Phyra75117;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000129;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 307747 308235 . - . ID=Phyra75117;Parent=Phyra75117;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 307747 308235 . - 0 ID=Phyra75117;Parent=Phyra75117;rank=1 scaffold_11 . exon 307747 308235 . - . ID=Phyra75117.1;Parent=Phyra75117;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 309234 312174 . + . ID=Phyra75118;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000130;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 309234 312174 . + . ID=Phyra75118;Parent=Phyra75118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 309234 310804 . + 0 ID=Phyra75118;Parent=Phyra75118;rank=1 scaffold_11 . exon 309234 310804 . + . ID=Phyra75118.1;Parent=Phyra75118;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 310895 311011 . + 0 ID=Phyra75118;Parent=Phyra75118;rank=2 scaffold_11 . exon 310895 311011 . + . ID=Phyra75118.2;Parent=Phyra75118;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . CDS 311079 311145 . + 0 ID=Phyra75118;Parent=Phyra75118;rank=3 scaffold_11 . exon 311079 311145 . + . ID=Phyra75118.3;Parent=Phyra75118;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 311209 311299 . + 0 ID=Phyra75118;Parent=Phyra75118;rank=4 scaffold_11 . exon 311209 311299 . + . ID=Phyra75118.4;Parent=Phyra75118;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_11 . CDS 311402 311672 . + 0 ID=Phyra75118;Parent=Phyra75118;rank=5 scaffold_11 . exon 311402 311672 . + . ID=Phyra75118.5;Parent=Phyra75118;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_11 . CDS 311802 312174 . + 0 ID=Phyra75118;Parent=Phyra75118;rank=6 scaffold_11 . exon 311802 312174 . + . ID=Phyra75118.6;Parent=Phyra75118;constitutive=1;ensembl_phase=2;rank=6 scaffold_11 ensembl protein_coding_gene 312835 316057 . + . ID=Phyra75119;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000131;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 312835 316057 . + . ID=Phyra75119;Parent=Phyra75119;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 312835 313152 . + 0 ID=Phyra75119;Parent=Phyra75119;rank=1 scaffold_11 . exon 312835 313152 . + . ID=Phyra75119.1;Parent=Phyra75119;constitutive=1;rank=1 scaffold_11 . CDS 313219 313896 . + 0 ID=Phyra75119;Parent=Phyra75119;rank=2 scaffold_11 . exon 313219 313896 . + . ID=Phyra75119.2;Parent=Phyra75119;constitutive=1;rank=2 scaffold_11 . CDS 314221 314328 . + 0 ID=Phyra75119;Parent=Phyra75119;rank=3 scaffold_11 . exon 314221 314328 . + . ID=Phyra75119.3;Parent=Phyra75119;constitutive=1;rank=3 scaffold_11 . CDS 314561 316057 . + 0 ID=Phyra75119;Parent=Phyra75119;rank=4 scaffold_11 . exon 314561 316057 . + . ID=Phyra75119.4;Parent=Phyra75119;constitutive=1;rank=4 scaffold_11 ensembl protein_coding_gene 317165 319778 . - . ID=Phyra39633;biotype=protein_coding;external_name=gwEuk.11.79.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 317165 319778 . - . ID=Phyra39633;Parent=Phyra39633;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 317165 317353 . - 0 ID=Phyra39633;Parent=Phyra39633;rank=6 scaffold_11 . exon 317165 317353 . - . ID=Phyra39633.6;Parent=Phyra39633;constitutive=1;rank=6 scaffold_11 . CDS 317525 318391 . - 0 ID=Phyra39633;Parent=Phyra39633;rank=5 scaffold_11 . exon 317525 318391 . - . ID=Phyra39633.5;Parent=Phyra39633;constitutive=1;rank=5 scaffold_11 . CDS 318569 319097 . - 0 ID=Phyra39633;Parent=Phyra39633;rank=4 scaffold_11 . exon 318569 319097 . - . ID=Phyra39633.4;Parent=Phyra39633;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 319165 319227 . - 0 ID=Phyra39633;Parent=Phyra39633;rank=3 scaffold_11 . exon 319165 319227 . - . ID=Phyra39633.3;Parent=Phyra39633;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_11 . CDS 319303 319447 . - 0 ID=Phyra39633;Parent=Phyra39633;rank=2 scaffold_11 . exon 319303 319447 . - . ID=Phyra39633.2;Parent=Phyra39633;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_11 . CDS 319532 319778 . - 0 ID=Phyra39633;Parent=Phyra39633;rank=1 scaffold_11 . exon 319532 319778 . - . ID=Phyra39633.1;Parent=Phyra39633;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 320079 323665 . + . ID=Phyra75121;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000133;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 320079 323665 . + . ID=Phyra75121;Parent=Phyra75121;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 320079 320112 . + 0 ID=Phyra75121;Parent=Phyra75121;rank=1 scaffold_11 . exon 320079 320112 . + . ID=Phyra75121.1;Parent=Phyra75121;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 320239 320293 . + 0 ID=Phyra75121;Parent=Phyra75121;rank=2 scaffold_11 . exon 320239 320293 . + . ID=Phyra75121.2;Parent=Phyra75121;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_11 . CDS 320446 321519 . + 0 ID=Phyra75121;Parent=Phyra75121;rank=3 scaffold_11 . exon 320446 321519 . + . ID=Phyra75121.3;Parent=Phyra75121;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_11 . CDS 321668 322382 . + 0 ID=Phyra75121;Parent=Phyra75121;rank=4 scaffold_11 . exon 321668 322382 . + . ID=Phyra75121.4;Parent=Phyra75121;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 322519 322612 . + 0 ID=Phyra75121;Parent=Phyra75121;rank=5 scaffold_11 . exon 322519 322612 . + . ID=Phyra75121.5;Parent=Phyra75121;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_11 . CDS 322659 322672 . + 0 ID=Phyra75121;Parent=Phyra75121;rank=6 scaffold_11 . exon 322659 322672 . + . ID=Phyra75121.6;Parent=Phyra75121;constitutive=1;ensembl_phase=1;rank=6 scaffold_11 . CDS 322986 323002 . + 0 ID=Phyra75121;Parent=Phyra75121;rank=7 scaffold_11 . exon 322986 323002 . + . ID=Phyra75121.7;Parent=Phyra75121;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_11 . CDS 323032 323665 . + 0 ID=Phyra75121;Parent=Phyra75121;rank=8 scaffold_11 . exon 323032 323665 . + . ID=Phyra75121.8;Parent=Phyra75121;constitutive=1;ensembl_phase=2;rank=8 scaffold_11 ensembl protein_coding_gene 324624 325600 . + . ID=Phyra75122;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000134;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 324624 325600 . + . ID=Phyra75122;Parent=Phyra75122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 324624 325061 . + 0 ID=Phyra75122;Parent=Phyra75122;rank=1 scaffold_11 . exon 324624 325061 . + . ID=Phyra75122.1;Parent=Phyra75122;constitutive=1;rank=1 scaffold_11 . CDS 325126 325314 . + 0 ID=Phyra75122;Parent=Phyra75122;rank=2 scaffold_11 . exon 325126 325314 . + . ID=Phyra75122.2;Parent=Phyra75122;constitutive=1;rank=2 scaffold_11 . CDS 325382 325600 . + 0 ID=Phyra75122;Parent=Phyra75122;rank=3 scaffold_11 . exon 325382 325600 . + . ID=Phyra75122.3;Parent=Phyra75122;constitutive=1;rank=3 scaffold_11 ensembl protein_coding_gene 325863 326317 . + . ID=Phyra75123;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000135;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 325863 326317 . + . ID=Phyra75123;Parent=Phyra75123;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 325863 325949 . + 0 ID=Phyra75123;Parent=Phyra75123;rank=1 scaffold_11 . exon 325863 325949 . + . ID=Phyra75123.1;Parent=Phyra75123;constitutive=1;rank=1 scaffold_11 . CDS 326042 326317 . + 0 ID=Phyra75123;Parent=Phyra75123;rank=2 scaffold_11 . exon 326042 326317 . + . ID=Phyra75123.2;Parent=Phyra75123;constitutive=1;rank=2 scaffold_11 ensembl protein_coding_gene 326757 327374 . + . ID=Phyra75124;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000136;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 326757 327374 . + . ID=Phyra75124;Parent=Phyra75124;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 326757 326795 . + 0 ID=Phyra75124;Parent=Phyra75124;rank=1 scaffold_11 . exon 326757 326795 . + . ID=Phyra75124.1;Parent=Phyra75124;constitutive=1;rank=1 scaffold_11 . CDS 326872 326943 . + 0 ID=Phyra75124;Parent=Phyra75124;rank=2 scaffold_11 . CDS 327009 327374 . + 0 ID=Phyra75124;Parent=Phyra75124;rank=3 scaffold_11 . biological_region 329145 329150 0.999 + . logic_name=eponine scaffold_11 . biological_region 334090 334090 0.999 + . logic_name=eponine scaffold_11 . biological_region 334171 334173 0.999 + . logic_name=eponine scaffold_11 . biological_region 335273 335277 0.999 + . logic_name=eponine scaffold_11 . exon 326872 326943 . + . ID=Phyra75124.2;Parent=Phyra75124;constitutive=1;rank=2 scaffold_11 . exon 327009 327374 . + . ID=Phyra75124.3;Parent=Phyra75124;constitutive=1;rank=3 scaffold_11 ensembl protein_coding_gene 327483 329212 . - . ID=Phyra75125;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000137;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 327483 329212 . - . ID=Phyra75125;Parent=Phyra75125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 327483 328604 . - 0 ID=Phyra75125;Parent=Phyra75125;rank=3 scaffold_11 . exon 327483 328604 . - . ID=Phyra75125.3;Parent=Phyra75125;constitutive=1;rank=3 scaffold_11 . CDS 328684 328798 . - 0 ID=Phyra75125;Parent=Phyra75125;rank=2 scaffold_11 . exon 328684 328798 . - . ID=Phyra75125.2;Parent=Phyra75125;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 328881 329212 . - 0 ID=Phyra75125;Parent=Phyra75125;rank=1 scaffold_11 . exon 328881 329212 . - . ID=Phyra75125.1;Parent=Phyra75125;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 329375 329767 . + . ID=Phyra75126;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000138;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 329375 329767 . + . ID=Phyra75126;Parent=Phyra75126;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 329375 329377 . + 0 ID=Phyra75126;Parent=Phyra75126;rank=1 scaffold_11 . exon 329375 329377 . + . ID=Phyra75126.1;Parent=Phyra75126;constitutive=1;rank=1 scaffold_11 . CDS 329450 329767 . + 0 ID=Phyra75126;Parent=Phyra75126;rank=2 scaffold_11 . exon 329450 329767 . + . ID=Phyra75126.2;Parent=Phyra75126;constitutive=1;rank=2 scaffold_11 ensembl protein_coding_gene 330214 330714 . + . ID=Phyra75127;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000139;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 330214 330714 . + . ID=Phyra75127;Parent=Phyra75127;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 330214 330269 . + 0 ID=Phyra75127;Parent=Phyra75127;rank=1 scaffold_11 . exon 330214 330269 . + . ID=Phyra75127.1;Parent=Phyra75127;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 330392 330465 . + 0 ID=Phyra75127;Parent=Phyra75127;rank=2 scaffold_11 . exon 330392 330465 . + . ID=Phyra75127.2;Parent=Phyra75127;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 330527 330714 . + 0 ID=Phyra75127;Parent=Phyra75127;rank=3 scaffold_11 . exon 330527 330714 . + . ID=Phyra75127.3;Parent=Phyra75127;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 ensembl protein_coding_gene 333069 334173 . - . ID=Phyra75128;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000140;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 333069 334173 . - . ID=Phyra75128;Parent=Phyra75128;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 333069 333759 . - 0 ID=Phyra75128;Parent=Phyra75128;rank=2 scaffold_11 . exon 333069 333759 . - . ID=Phyra75128.2;Parent=Phyra75128;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 333833 334173 . - 0 ID=Phyra75128;Parent=Phyra75128;rank=1 scaffold_11 . exon 333833 334173 . - . ID=Phyra75128.1;Parent=Phyra75128;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 335064 337490 . - . ID=Phyra94049;biotype=protein_coding;external_name=C_scaffold_11000073;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 335064 337490 . - . ID=Phyra94049;Parent=Phyra94049;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 335064 335739 . - 0 ID=Phyra94049;Parent=Phyra94049;rank=5 scaffold_11 . exon 335064 335739 . - . ID=Phyra94049.5;Parent=Phyra94049;constitutive=1;ensembl_phase=2;rank=5 scaffold_11 . CDS 335799 336187 . - 0 ID=Phyra94049;Parent=Phyra94049;rank=4 scaffold_11 . exon 335799 336187 . - . ID=Phyra94049.4;Parent=Phyra94049;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_11 . CDS 336402 336744 . - 0 ID=Phyra94049;Parent=Phyra94049;rank=3 scaffold_11 . exon 336402 336744 . - . ID=Phyra94049.3;Parent=Phyra94049;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 336898 337083 . - 0 ID=Phyra94049;Parent=Phyra94049;rank=2 scaffold_11 . CDS 337141 337490 . - 0 ID=Phyra94049;Parent=Phyra94049;rank=1 scaffold_11 ensembl protein_coding_gene 339685 340859 . - . ID=Phyra75131;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000143;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 339685 340859 . - . ID=Phyra75131;Parent=Phyra75131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 339685 340438 . - 0 ID=Phyra75131;Parent=Phyra75131;rank=2 scaffold_11 . exon 339685 340438 . - . ID=Phyra75131.2;Parent=Phyra75131;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 340519 340859 . - 0 ID=Phyra75131;Parent=Phyra75131;rank=1 scaffold_11 . exon 340519 340859 . - . ID=Phyra75131.1;Parent=Phyra75131;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 342021 342647 . + . ID=Phyra75132;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000144;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 342021 342647 . + . ID=Phyra75132;Parent=Phyra75132;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 342021 342647 . + 0 ID=Phyra75132;Parent=Phyra75132;rank=1 scaffold_11 . exon 342021 342647 . + . ID=Phyra75132.1;Parent=Phyra75132;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 344095 345675 . - . ID=Phyra75133;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000145;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 344095 345675 . - . ID=Phyra75133;Parent=Phyra75133;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 344095 345675 . - 0 ID=Phyra75133;Parent=Phyra75133;rank=1 scaffold_11 . exon 344095 345675 . - . ID=Phyra75133.1;Parent=Phyra75133;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 346201 348386 . - . ID=Phyra75134;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000146;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 346201 348386 . - . ID=Phyra75134;Parent=Phyra75134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 346201 347787 . - 0 ID=Phyra75134;Parent=Phyra75134;rank=3 scaffold_11 . exon 346201 347787 . - . ID=Phyra75134.3;Parent=Phyra75134;constitutive=1;rank=3 scaffold_11 . CDS 347871 347981 . - 0 ID=Phyra75134;Parent=Phyra75134;rank=2 scaffold_11 . CDS 348318 348386 . - 0 ID=Phyra75134;Parent=Phyra75134;rank=1 scaffold_11 . exon 336898 337083 . - . ID=Phyra94049.2;Parent=Phyra94049;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . exon 337141 337490 . - . ID=Phyra94049.1;Parent=Phyra94049;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 338121 339233 . - . ID=Phyra94050;biotype=protein_coding;external_name=C_scaffold_11000074;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 338121 339233 . - . ID=Phyra94050;Parent=Phyra94050;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 338121 338805 . - 0 ID=Phyra94050;Parent=Phyra94050;rank=2 scaffold_11 . exon 338121 338805 . - . ID=Phyra94050.2;Parent=Phyra94050;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 338881 339233 . - 0 ID=Phyra94050;Parent=Phyra94050;rank=1 scaffold_11 . exon 338881 339233 . - . ID=Phyra94050.1;Parent=Phyra94050;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . biological_region 347421 347424 0.999 - . logic_name=eponine scaffold_11 . biological_region 350872 350874 0.999 + . logic_name=eponine scaffold_11 . biological_region 351871 351873 0.999 + . logic_name=eponine scaffold_11 . repeat_region 352604 352611 . ? . description=dust scaffold_11 . biological_region 353878 353882 0.999 + . logic_name=eponine scaffold_11 . repeat_region 354524 354536 . ? . description=dust scaffold_11 ensembl protein_coding_gene 352851 353528 . - . ID=Phyra71281;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000016;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 352851 353528 . - . ID=Phyra71281;Parent=Phyra71281;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 352851 353528 . - 0 ID=Phyra71281;Parent=Phyra71281;rank=1 scaffold_11 . exon 352851 353528 . - . ID=Phyra71281.1;Parent=Phyra71281;constitutive=1;rank=1 scaffold_11 . exon 347871 347981 . - . ID=Phyra75134.2;Parent=Phyra75134;constitutive=1;rank=2 scaffold_11 . exon 348318 348386 . - . ID=Phyra75134.1;Parent=Phyra75134;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 350383 351996 . + . ID=Phyra75135;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000147;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 350383 351996 . + . ID=Phyra75135;Parent=Phyra75135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 350383 351996 . + 0 ID=Phyra75135;Parent=Phyra75135;rank=1 scaffold_11 . exon 350383 351996 . + . ID=Phyra75135.1;Parent=Phyra75135;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 353743 354504 . + . ID=Phyra75137;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000149;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 353743 354504 . + . ID=Phyra75137;Parent=Phyra75137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 353743 354504 . + 0 ID=Phyra75137;Parent=Phyra75137;rank=1 scaffold_11 . exon 353743 354504 . + . ID=Phyra75137.1;Parent=Phyra75137;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 354658 355746 . - . ID=Phyra75138;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000150;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 354658 355746 . - . ID=Phyra75138;Parent=Phyra75138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 354658 355623 . - 0 ID=Phyra75138;Parent=Phyra75138;rank=2 scaffold_11 . exon 354658 355623 . - . ID=Phyra75138.2;Parent=Phyra75138;constitutive=1;rank=2 scaffold_11 . CDS 355699 355746 . - 0 ID=Phyra75138;Parent=Phyra75138;rank=1 scaffold_11 . exon 355699 355746 . - . ID=Phyra75138.1;Parent=Phyra75138;constitutive=1;rank=1 scaffold_11 . repeat_region 360309 360333 . ? . description=trf scaffold_11 ensembl protein_coding_gene 356906 357214 . + . ID=Phyra75139;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000151;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 356906 357214 . + . ID=Phyra75139;Parent=Phyra75139;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 356906 357214 . + 0 ID=Phyra75139;Parent=Phyra75139;rank=1 scaffold_11 . exon 356906 357214 . + . ID=Phyra75139.1;Parent=Phyra75139;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 358328 360052 . - . ID=Phyra75140;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000152;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 358328 360052 . - . ID=Phyra75140;Parent=Phyra75140;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 358328 358419 . - 0 ID=Phyra75140;Parent=Phyra75140;rank=3 scaffold_11 . exon 358328 358419 . - . ID=Phyra75140.3;Parent=Phyra75140;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 358500 358927 . - 0 ID=Phyra75140;Parent=Phyra75140;rank=2 scaffold_11 . exon 358500 358927 . - . ID=Phyra75140.2;Parent=Phyra75140;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 359124 360052 . - 0 ID=Phyra75140;Parent=Phyra75140;rank=1 scaffold_11 . exon 359124 360052 . - . ID=Phyra75140.1;Parent=Phyra75140;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 361218 362081 . - . ID=Phyra75141;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000153;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 361218 362081 . - . ID=Phyra75141;Parent=Phyra75141;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 361218 362081 . - 0 ID=Phyra75141;Parent=Phyra75141;rank=1 scaffold_11 . exon 361218 362081 . - . ID=Phyra75141.1;Parent=Phyra75141;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 363305 365524 . + . ID=Phyra75142;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000154;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 363305 365524 . + . ID=Phyra75142;Parent=Phyra75142;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 363305 365524 . + 0 ID=Phyra75142;Parent=Phyra75142;rank=1 scaffold_11 . exon 363305 365524 . + . ID=Phyra75142.1;Parent=Phyra75142;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 365691 367231 . - . ID=Phyra75143;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000155;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 365691 367231 . - . ID=Phyra75143;Parent=Phyra75143;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 365691 366415 . - 0 ID=Phyra75143;Parent=Phyra75143;rank=5 scaffold_11 . exon 365691 366415 . - . ID=Phyra75143.5;Parent=Phyra75143;constitutive=1;ensembl_phase=1;rank=5 scaffold_11 . CDS 366493 366572 . - 0 ID=Phyra75143;Parent=Phyra75143;rank=4 scaffold_11 . CDS 366647 366919 . - 0 ID=Phyra75143;Parent=Phyra75143;rank=3 scaffold_11 . CDS 367007 367062 . - 0 ID=Phyra75143;Parent=Phyra75143;rank=2 scaffold_11 . CDS 367154 367231 . - 0 ID=Phyra75143;Parent=Phyra75143;rank=1 scaffold_11 . biological_region 368603 368610 0.999 + . logic_name=eponine scaffold_11 . biological_region 369840 369842 0.999 + . logic_name=eponine scaffold_11 . biological_region 369931 369944 0.999 + . logic_name=eponine scaffold_11 . biological_region 369955 369961 0.999 - . logic_name=eponine scaffold_11 . biological_region 370011 370016 0.999 + . logic_name=eponine scaffold_11 . biological_region 370030 370037 0.999 - . logic_name=eponine scaffold_11 . biological_region 375105 375106 0.999 + . logic_name=eponine scaffold_11 . biological_region 375463 375467 0.999 - . logic_name=eponine scaffold_11 . biological_region 375503 375506 0.999 - . logic_name=eponine scaffold_11 . exon 366493 366572 . - . ID=Phyra75143.4;Parent=Phyra75143;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_11 . exon 366647 366919 . - . ID=Phyra75143.3;Parent=Phyra75143;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_11 . exon 367007 367062 . - . ID=Phyra75143.2;Parent=Phyra75143;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . exon 367154 367231 . - . ID=Phyra75143.1;Parent=Phyra75143;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 371962 373299 . + . ID=Phyra75147;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000159;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 371962 373299 . + . ID=Phyra75147;Parent=Phyra75147;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 371962 373299 . + 0 ID=Phyra75147;Parent=Phyra75147;rank=1 scaffold_11 . exon 371962 373299 . + . ID=Phyra75147.1;Parent=Phyra75147;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 373596 374242 . - . ID=Phyra75148;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000160;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 373596 374242 . - . ID=Phyra75148;Parent=Phyra75148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 373596 373664 . - 0 ID=Phyra75148;Parent=Phyra75148;rank=3 scaffold_11 . exon 373596 373664 . - . ID=Phyra75148.3;Parent=Phyra75148;constitutive=1;rank=3 scaffold_11 . CDS 373739 373849 . - 0 ID=Phyra75148;Parent=Phyra75148;rank=2 scaffold_11 . exon 373739 373849 . - . ID=Phyra75148.2;Parent=Phyra75148;constitutive=1;rank=2 scaffold_11 . CDS 373895 374242 . - 0 ID=Phyra75148;Parent=Phyra75148;rank=1 scaffold_11 . exon 373895 374242 . - . ID=Phyra75148.1;Parent=Phyra75148;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 375311 377229 . + . ID=Phyra75149;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000161;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 375311 377229 . + . ID=Phyra75149;Parent=Phyra75149;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 375311 375629 . + 0 ID=Phyra75149;Parent=Phyra75149;rank=1 scaffold_11 . exon 375311 375629 . + . ID=Phyra75149.1;Parent=Phyra75149;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 375699 375736 . + 0 ID=Phyra75149;Parent=Phyra75149;rank=2 scaffold_11 . exon 375699 375736 . + . ID=Phyra75149.2;Parent=Phyra75149;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 375796 377229 . + 0 ID=Phyra75149;Parent=Phyra75149;rank=3 scaffold_11 . exon 375796 377229 . + . ID=Phyra75149.3;Parent=Phyra75149;constitutive=1;rank=3 scaffold_11 ensembl protein_coding_gene 367719 369265 . + . ID=Phyra94052;biotype=protein_coding;external_name=C_scaffold_11000076;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 367719 369265 . + . ID=Phyra94052;Parent=Phyra94052;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 367719 367850 . + 0 ID=Phyra94052;Parent=Phyra94052;rank=1 scaffold_11 . exon 367719 367850 . + . ID=Phyra94052.1;Parent=Phyra94052;constitutive=1;rank=1 scaffold_11 . CDS 367922 368025 . + 0 ID=Phyra94052;Parent=Phyra94052;rank=2 scaffold_11 . exon 367922 368025 . + . ID=Phyra94052.2;Parent=Phyra94052;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . CDS 368224 368240 . + 0 ID=Phyra94052;Parent=Phyra94052;rank=3 scaffold_11 . exon 368224 368240 . + . ID=Phyra94052.3;Parent=Phyra94052;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 368492 368877 . + 0 ID=Phyra94052;Parent=Phyra94052;rank=4 scaffold_11 . exon 368492 368877 . + . ID=Phyra94052.4;Parent=Phyra94052;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 368945 369033 . + 0 ID=Phyra94052;Parent=Phyra94052;rank=5 scaffold_11 . exon 368945 369033 . + . ID=Phyra94052.5;Parent=Phyra94052;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_11 . CDS 369103 369265 . + 0 ID=Phyra94052;Parent=Phyra94052;rank=6 scaffold_11 . exon 369103 369265 . + . ID=Phyra94052.6;Parent=Phyra94052;constitutive=1;ensembl_phase=2;rank=6 scaffold_11 ensembl protein_coding_gene 369625 371432 . - . ID=Phyra94053;biotype=protein_coding;external_name=C_scaffold_11000077;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 369625 371432 . - . ID=Phyra94053;Parent=Phyra94053;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 369625 369705 . - 0 ID=Phyra94053;Parent=Phyra94053;rank=5 scaffold_11 . exon 369625 369705 . - . ID=Phyra94053.5;Parent=Phyra94053;constitutive=1;rank=5 scaffold_11 . CDS 369787 370115 . - 0 ID=Phyra94053;Parent=Phyra94053;rank=4 scaffold_11 . exon 369787 370115 . - . ID=Phyra94053.4;Parent=Phyra94053;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 370306 370462 . - 0 ID=Phyra94053;Parent=Phyra94053;rank=3 scaffold_11 . exon 370306 370462 . - . ID=Phyra94053.3;Parent=Phyra94053;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . CDS 370954 371124 . - 0 ID=Phyra94053;Parent=Phyra94053;rank=2 scaffold_11 . exon 370954 371124 . - . ID=Phyra94053.2;Parent=Phyra94053;constitutive=1;rank=2 scaffold_11 . CDS 371187 371432 . - 0 ID=Phyra94053;Parent=Phyra94053;rank=1 scaffold_11 . exon 371187 371432 . - . ID=Phyra94053.1;Parent=Phyra94053;constitutive=1;rank=1 scaffold_11 . repeat_region 376842 376892 . ? . description=dust scaffold_11 . repeat_region 383195 383241 . ? . description=trf scaffold_11 . repeat_region 383199 383241 . ? . description=dust scaffold_11 . repeat_region 386172 386217 . ? . description=trf scaffold_11 ensembl protein_coding_gene 377753 377986 . - . ID=Phyra39666;biotype=protein_coding;external_name=gwEuk.11.112.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 377753 377986 . - . ID=Phyra39666;Parent=Phyra39666;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 377753 377986 . - 0 ID=Phyra39666;Parent=Phyra39666;rank=1 scaffold_11 . exon 377753 377986 . - . ID=Phyra39666.1;Parent=Phyra39666;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 383693 383932 . + . ID=Phyra39671;biotype=protein_coding;external_name=gwEuk.11.117.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 383693 383932 . + . ID=Phyra39671;Parent=Phyra39671;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 383693 383932 . + 0 ID=Phyra39671;Parent=Phyra39671;rank=1 scaffold_11 . exon 383693 383932 . + . ID=Phyra39671.1;Parent=Phyra39671;constitutive=1;rank=1 scaffold_11 ensembl pseudogene 386082 386418 . - . ID=Phyra39678;biotype=pseudogene;external_name=gwEuk.11.124.1;logic_name=jgi_phyra1 scaffold_11 ensembl pseudogene 386082 386418 . - . ID=Phyra39678;Parent=Phyra39678;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_11 . exon 386082 386418 . - . ID=Phyra39678.1;Parent=Phyra39678;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 378194 379474 . - . ID=Phyra75150;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000162;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 378194 379474 . - . ID=Phyra75150;Parent=Phyra75150;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 378194 379474 . - 0 ID=Phyra75150;Parent=Phyra75150;rank=1 scaffold_11 . exon 378194 379474 . - . ID=Phyra75150.1;Parent=Phyra75150;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 379645 381024 . + . ID=Phyra75151;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000163;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 379645 381024 . + . ID=Phyra75151;Parent=Phyra75151;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 379645 379839 . + 0 ID=Phyra75151;Parent=Phyra75151;rank=1 scaffold_11 . exon 379645 379839 . + . ID=Phyra75151.1;Parent=Phyra75151;constitutive=1;rank=1 scaffold_11 . CDS 379902 379977 . + 0 ID=Phyra75151;Parent=Phyra75151;rank=2 scaffold_11 . exon 379902 379977 . + . ID=Phyra75151.2;Parent=Phyra75151;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 380055 380479 . + 0 ID=Phyra75151;Parent=Phyra75151;rank=3 scaffold_11 . exon 380055 380479 . + . ID=Phyra75151.3;Parent=Phyra75151;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 380551 381024 . + 0 ID=Phyra75151;Parent=Phyra75151;rank=4 scaffold_11 . exon 380551 381024 . + . ID=Phyra75151.4;Parent=Phyra75151;constitutive=1;rank=4 scaffold_11 ensembl protein_coding_gene 381205 382433 . + . ID=Phyra75152;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000164;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 381205 382433 . + . ID=Phyra75152;Parent=Phyra75152;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 381205 381300 . + 0 ID=Phyra75152;Parent=Phyra75152;rank=1 scaffold_11 . exon 381205 381300 . + . ID=Phyra75152.1;Parent=Phyra75152;constitutive=1;rank=1 scaffold_11 . CDS 381360 381488 . + 0 ID=Phyra75152;Parent=Phyra75152;rank=2 scaffold_11 . exon 381360 381488 . + . ID=Phyra75152.2;Parent=Phyra75152;constitutive=1;rank=2 scaffold_11 . CDS 381586 381655 . + 0 ID=Phyra75152;Parent=Phyra75152;rank=3 scaffold_11 . exon 381586 381655 . + . ID=Phyra75152.3;Parent=Phyra75152;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . CDS 381847 382433 . + 0 ID=Phyra75152;Parent=Phyra75152;rank=4 scaffold_11 . exon 381847 382433 . + . ID=Phyra75152.4;Parent=Phyra75152;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 ensembl protein_coding_gene 382612 383496 . - . ID=Phyra75153;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000165;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 382612 383496 . - . ID=Phyra75153;Parent=Phyra75153;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 382612 382848 . - 0 ID=Phyra75153;Parent=Phyra75153;rank=3 scaffold_11 . exon 382612 382848 . - . ID=Phyra75153.3;Parent=Phyra75153;constitutive=1;rank=3 scaffold_11 . CDS 382909 382945 . - 0 ID=Phyra75153;Parent=Phyra75153;rank=2 scaffold_11 . exon 382909 382945 . - . ID=Phyra75153.2;Parent=Phyra75153;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 383045 383496 . - 0 ID=Phyra75153;Parent=Phyra75153;rank=1 scaffold_11 . exon 383045 383496 . - . ID=Phyra75153.1;Parent=Phyra75153;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 384166 385014 . - . ID=Phyra75154;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000166;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 384166 385014 . - . ID=Phyra75154;Parent=Phyra75154;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 384166 384575 . - 0 ID=Phyra75154;Parent=Phyra75154;rank=2 scaffold_11 . exon 384166 384575 . - . ID=Phyra75154.2;Parent=Phyra75154;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 384645 385014 . - 0 ID=Phyra75154;Parent=Phyra75154;rank=1 scaffold_11 . exon 384645 385014 . - . ID=Phyra75154.1;Parent=Phyra75154;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 385150 385559 . + . ID=Phyra94055;biotype=protein_coding;external_name=C_scaffold_11000079;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 385150 385559 . + . ID=Phyra94055;Parent=Phyra94055;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 385150 385428 . + 0 ID=Phyra94055;Parent=Phyra94055;rank=1 scaffold_11 . exon 385150 385428 . + . ID=Phyra94055.1;Parent=Phyra94055;constitutive=1;rank=1 scaffold_11 . CDS 385557 385559 . + 0 ID=Phyra94055;Parent=Phyra94055;rank=2 scaffold_11 . exon 385557 385559 . + . ID=Phyra94055.2;Parent=Phyra94055;constitutive=1;rank=2 scaffold_11 . biological_region 387092 387095 0.999 - . logic_name=eponine scaffold_11 . biological_region 387121 387126 0.999 - . logic_name=eponine scaffold_11 . biological_region 388866 388867 0.999 + . logic_name=eponine scaffold_11 . biological_region 388992 388995 0.999 - . logic_name=eponine scaffold_11 . biological_region 389925 389929 0.999 + . logic_name=eponine scaffold_11 . biological_region 392005 392008 0.999 + . logic_name=eponine scaffold_11 . biological_region 394584 394587 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 390478 391186 . - . ID=Phyra71285;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000020;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 390478 391186 . - . ID=Phyra71285;Parent=Phyra71285;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 390478 390771 . - 0 ID=Phyra71285;Parent=Phyra71285;rank=3 scaffold_11 . exon 390478 390771 . - . ID=Phyra71285.3;Parent=Phyra71285;constitutive=1;rank=3 scaffold_11 . CDS 390847 390906 . - 0 ID=Phyra71285;Parent=Phyra71285;rank=2 scaffold_11 . exon 390847 390906 . - . ID=Phyra71285.2;Parent=Phyra71285;constitutive=1;rank=2 scaffold_11 . CDS 390989 391186 . - 0 ID=Phyra71285;Parent=Phyra71285;rank=1 scaffold_11 . exon 390989 391186 . - . ID=Phyra71285.1;Parent=Phyra71285;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 386807 387442 . - . ID=Phyra75157;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000169;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 386807 387442 . - . ID=Phyra75157;Parent=Phyra75157;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 386807 387442 . - 0 ID=Phyra75157;Parent=Phyra75157;rank=1 scaffold_11 . exon 386807 387442 . - . ID=Phyra75157.1;Parent=Phyra75157;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 392295 394154 . - . ID=Phyra75161;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000173;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 392295 394154 . - . ID=Phyra75161;Parent=Phyra75161;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 392295 394154 . - 0 ID=Phyra75161;Parent=Phyra75161;rank=1 scaffold_11 . exon 392295 394154 . - . ID=Phyra75161.1;Parent=Phyra75161;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 388884 390173 . + . ID=Phyra94060;biotype=protein_coding;external_name=C_scaffold_11000084;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 388884 390173 . + . ID=Phyra94060;Parent=Phyra94060;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 388884 389072 . + 0 ID=Phyra94060;Parent=Phyra94060;rank=1 scaffold_11 . exon 388884 389072 . + . ID=Phyra94060.1;Parent=Phyra94060;constitutive=1;rank=1 scaffold_11 . CDS 389106 390173 . + 0 ID=Phyra94060;Parent=Phyra94060;rank=2 scaffold_11 . exon 389106 390173 . + . ID=Phyra94060.2;Parent=Phyra94060;constitutive=1;rank=2 scaffold_11 ensembl protein_coding_gene 394271 397167 . + . ID=Phyra94064;biotype=protein_coding;external_name=C_scaffold_11000088;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 394271 397167 . + . ID=Phyra94064;Parent=Phyra94064;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 394271 394863 . + 0 ID=Phyra94064;Parent=Phyra94064;rank=1 scaffold_11 . exon 394271 394863 . + . ID=Phyra94064.1;Parent=Phyra94064;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 394903 395237 . + 0 ID=Phyra94064;Parent=Phyra94064;rank=2 scaffold_11 . exon 394903 395237 . + . ID=Phyra94064.2;Parent=Phyra94064;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 395295 396024 . + 0 ID=Phyra94064;Parent=Phyra94064;rank=3 scaffold_11 . exon 395295 396024 . + . ID=Phyra94064.3;Parent=Phyra94064;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_11 . CDS 396838 397115 . + 0 ID=Phyra94064;Parent=Phyra94064;rank=4 scaffold_11 . CDS 397163 397167 . + 0 ID=Phyra94064;Parent=Phyra94064;rank=5 scaffold_11 . repeat_region 404248 404255 . ? . description=dust scaffold_11 . repeat_region 404285 404319 . ? . description=trf scaffold_11 . repeat_region 404977 405020 . ? . description=trf scaffold_11 . repeat_region 405226 405258 . ? . description=trf scaffold_11 ensembl protein_coding_gene 399119 400263 . + . ID=Phyra75163;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000175;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 399119 400263 . + . ID=Phyra75163;Parent=Phyra75163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 399119 399259 . + 0 ID=Phyra75163;Parent=Phyra75163;rank=1 scaffold_11 . exon 399119 399259 . + . ID=Phyra75163.1;Parent=Phyra75163;constitutive=1;rank=1 scaffold_11 . CDS 399333 399404 . + 0 ID=Phyra75163;Parent=Phyra75163;rank=2 scaffold_11 . exon 399333 399404 . + . ID=Phyra75163.2;Parent=Phyra75163;constitutive=1;rank=2 scaffold_11 . CDS 399907 400014 . + 0 ID=Phyra75163;Parent=Phyra75163;rank=3 scaffold_11 . exon 399907 400014 . + . ID=Phyra75163.3;Parent=Phyra75163;constitutive=1;rank=3 scaffold_11 . CDS 400084 400263 . + 0 ID=Phyra75163;Parent=Phyra75163;rank=4 scaffold_11 . exon 400084 400263 . + . ID=Phyra75163.4;Parent=Phyra75163;constitutive=1;rank=4 scaffold_11 ensembl protein_coding_gene 400763 403108 . - . ID=Phyra75164;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000176;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 400763 403108 . - . ID=Phyra75164;Parent=Phyra75164;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 400763 401026 . - 0 ID=Phyra75164;Parent=Phyra75164;rank=2 scaffold_11 . exon 400763 401026 . - . ID=Phyra75164.2;Parent=Phyra75164;constitutive=1;rank=2 scaffold_11 . CDS 401099 403108 . - 0 ID=Phyra75164;Parent=Phyra75164;rank=1 scaffold_11 . exon 401099 403108 . - . ID=Phyra75164.1;Parent=Phyra75164;constitutive=1;rank=1 scaffold_11 . exon 396838 397115 . + . ID=Phyra94064.4;Parent=Phyra94064;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_11 . exon 397163 397167 . + . ID=Phyra94064.5;Parent=Phyra94064;constitutive=1;ensembl_phase=1;rank=5 scaffold_11 ensembl protein_coding_gene 411973 412474 . + . ID=Phyra75165;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000177;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 411973 412474 . + . ID=Phyra75165;Parent=Phyra75165;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 411973 412206 . + 0 ID=Phyra75165;Parent=Phyra75165;rank=1 scaffold_11 . exon 411973 412206 . + . ID=Phyra75165.1;Parent=Phyra75165;constitutive=1;rank=1 scaffold_11 . CDS 412250 412474 . + 0 ID=Phyra75165;Parent=Phyra75165;rank=2 scaffold_11 . exon 412250 412474 . + . ID=Phyra75165.2;Parent=Phyra75165;constitutive=1;rank=2 scaffold_11 . repeat_region 416304 416317 . ? . description=dust scaffold_11 . repeat_region 419725 419738 . ? . description=dust scaffold_11 . repeat_region 419887 419900 . ? . description=dust scaffold_11 ensembl protein_coding_gene 416835 417625 . - . ID=Phyra75166;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000178;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 416835 417625 . - . ID=Phyra75166;Parent=Phyra75166;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 416835 416977 . - 0 ID=Phyra75166;Parent=Phyra75166;rank=3 scaffold_11 . exon 416835 416977 . - . ID=Phyra75166.3;Parent=Phyra75166;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 417024 417325 . - 0 ID=Phyra75166;Parent=Phyra75166;rank=2 scaffold_11 . exon 417024 417325 . - . ID=Phyra75166.2;Parent=Phyra75166;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 417498 417625 . - 0 ID=Phyra75166;Parent=Phyra75166;rank=1 scaffold_11 . exon 417498 417625 . - . ID=Phyra75166.1;Parent=Phyra75166;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 418128 418619 . - . ID=Phyra75167;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000179;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 418128 418619 . - . ID=Phyra75167;Parent=Phyra75167;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 418128 418619 . - 0 ID=Phyra75167;Parent=Phyra75167;rank=1 scaffold_11 . exon 418128 418619 . - . ID=Phyra75167.1;Parent=Phyra75167;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 425507 426504 . - . ID=Phyra75168;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000180;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 425507 426504 . - . ID=Phyra75168;Parent=Phyra75168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 425507 425528 . - 0 ID=Phyra75168;Parent=Phyra75168;rank=3 scaffold_11 . exon 425507 425528 . - . ID=Phyra75168.3;Parent=Phyra75168;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 425558 425892 . - 0 ID=Phyra75168;Parent=Phyra75168;rank=2 scaffold_11 . exon 425558 425892 . - . ID=Phyra75168.2;Parent=Phyra75168;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . CDS 425962 426504 . - 0 ID=Phyra75168;Parent=Phyra75168;rank=1 scaffold_11 . biological_region 426343 426344 0.999 - . logic_name=eponine scaffold_11 . biological_region 426436 426437 0.999 - . logic_name=eponine scaffold_11 . biological_region 426729 426733 0.999 + . logic_name=eponine scaffold_11 . repeat_region 430098 430136 . ? . description=trf scaffold_11 . exon 425962 426504 . - . ID=Phyra75168.1;Parent=Phyra75168;constitutive=1;rank=1 scaffold_11 . repeat_region 436436 436492 . ? . description=dust scaffold_11 . repeat_region 438594 438609 . ? . description=dust scaffold_11 . repeat_region 441874 441888 . ? . description=dust scaffold_11 ensembl protein_coding_gene 439352 440062 . + . ID=Phyra75171;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000183;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 439352 440062 . + . ID=Phyra75171;Parent=Phyra75171;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 439352 440062 . + 0 ID=Phyra75171;Parent=Phyra75171;rank=1 scaffold_11 . exon 439352 440062 . + . ID=Phyra75171.1;Parent=Phyra75171;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 440494 441342 . - . ID=Phyra75172;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000184;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 440494 441342 . - . ID=Phyra75172;Parent=Phyra75172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 440494 441342 . - 0 ID=Phyra75172;Parent=Phyra75172;rank=1 scaffold_11 . exon 440494 441342 . - . ID=Phyra75172.1;Parent=Phyra75172;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 442140 442988 . + . ID=Phyra75173;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000185;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 442140 442988 . + . ID=Phyra75173;Parent=Phyra75173;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 442140 442988 . + 0 ID=Phyra75173;Parent=Phyra75173;rank=1 scaffold_11 . exon 442140 442988 . + . ID=Phyra75173.1;Parent=Phyra75173;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 436941 439146 . + . ID=Phyra94065;biotype=protein_coding;external_name=C_scaffold_11000089;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 436941 439146 . + . ID=Phyra94065;Parent=Phyra94065;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 436941 436954 . + 0 ID=Phyra94065;Parent=Phyra94065;rank=1 scaffold_11 . exon 436941 436954 . + . ID=Phyra94065.1;Parent=Phyra94065;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 437076 437152 . + 0 ID=Phyra94065;Parent=Phyra94065;rank=2 scaffold_11 . exon 437076 437152 . + . ID=Phyra94065.2;Parent=Phyra94065;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 437220 437459 . + 0 ID=Phyra94065;Parent=Phyra94065;rank=3 scaffold_11 . exon 437220 437459 . + . ID=Phyra94065.3;Parent=Phyra94065;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 437741 437821 . + 0 ID=Phyra94065;Parent=Phyra94065;rank=4 scaffold_11 . exon 437741 437821 . + . ID=Phyra94065.4;Parent=Phyra94065;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 437962 438153 . + 0 ID=Phyra94065;Parent=Phyra94065;rank=5 scaffold_11 . exon 437962 438153 . + . ID=Phyra94065.5;Parent=Phyra94065;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_11 . CDS 438252 438358 . + 0 ID=Phyra94065;Parent=Phyra94065;rank=6 scaffold_11 . exon 438252 438358 . + . ID=Phyra94065.6;Parent=Phyra94065;constitutive=1;ensembl_phase=1;rank=6 scaffold_11 . CDS 438467 438549 . + 0 ID=Phyra94065;Parent=Phyra94065;rank=7 scaffold_11 . exon 438467 438549 . + . ID=Phyra94065.7;Parent=Phyra94065;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_11 . CDS 438620 438756 . + 0 ID=Phyra94065;Parent=Phyra94065;rank=8 scaffold_11 . exon 438620 438756 . + . ID=Phyra94065.8;Parent=Phyra94065;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_11 . CDS 438830 439146 . + 0 ID=Phyra94065;Parent=Phyra94065;rank=9 scaffold_11 . exon 438830 439146 . + . ID=Phyra94065.9;Parent=Phyra94065;constitutive=1;ensembl_phase=1;rank=9 scaffold_11 ensembl protein_coding_gene 443304 445232 . + . ID=Phyra94066;biotype=protein_coding;external_name=C_scaffold_11000090;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 443304 445232 . + . ID=Phyra94066;Parent=Phyra94066;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . exon 443304 443657 . + . ID=Phyra94066.1;Parent=Phyra94066;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 443306 443657 . + 0 ID=Phyra94066;Parent=Phyra94066;rank=1 scaffold_11 . CDS 443732 444231 . + 0 ID=Phyra94066;Parent=Phyra94066;rank=2 scaffold_11 . exon 443732 444231 . + . ID=Phyra94066.2;Parent=Phyra94066;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 444458 445007 . + 0 ID=Phyra94066;Parent=Phyra94066;rank=3 scaffold_11 . exon 444458 445007 . + . ID=Phyra94066.3;Parent=Phyra94066;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . CDS 445078 445232 . + 0 ID=Phyra94066;Parent=Phyra94066;rank=4 scaffold_11 . exon 445078 445232 . + . ID=Phyra94066.4;Parent=Phyra94066;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 ensembl protein_coding_gene 445433 446190 . - . ID=Phyra94069;biotype=protein_coding;external_name=C_scaffold_11000093;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 445433 446190 . - . ID=Phyra94069;Parent=Phyra94069;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 445433 445516 . - 0 ID=Phyra94069;Parent=Phyra94069;rank=5 scaffold_11 . exon 445433 445516 . - . ID=Phyra94069.5;Parent=Phyra94069;constitutive=1;rank=5 scaffold_11 . CDS 445591 445655 . - 0 ID=Phyra94069;Parent=Phyra94069;rank=4 scaffold_11 . exon 445591 445655 . - . ID=Phyra94069.4;Parent=Phyra94069;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 445737 445814 . - 0 ID=Phyra94069;Parent=Phyra94069;rank=3 scaffold_11 . CDS 445896 445977 . - 0 ID=Phyra94069;Parent=Phyra94069;rank=2 scaffold_11 . CDS 446059 446190 . - 0 ID=Phyra94069;Parent=Phyra94069;rank=1 scaffold_11 . biological_region 445925 445929 0.999 - . logic_name=eponine scaffold_11 . biological_region 446068 446069 0.999 + . logic_name=eponine scaffold_11 . biological_region 449882 449886 0.999 - . logic_name=eponine scaffold_11 . biological_region 450129 450130 0.999 - . logic_name=eponine scaffold_11 . repeat_region 450481 450590 . ? . description=trf scaffold_11 . repeat_region 450486 450559 . ? . description=trf scaffold_11 . repeat_region 450906 451007 . ? . description=trf scaffold_11 . repeat_region 450906 451007 . ? . description=trf scaffold_11 ensembl protein_coding_gene 449379 449855 . - . ID=Phyra75177;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000189;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 449379 449855 . - . ID=Phyra75177;Parent=Phyra75177;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 449379 449505 . - 0 ID=Phyra75177;Parent=Phyra75177;rank=2 scaffold_11 . exon 449379 449505 . - . ID=Phyra75177.2;Parent=Phyra75177;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 449590 449855 . - 0 ID=Phyra75177;Parent=Phyra75177;rank=1 scaffold_11 . exon 449590 449855 . - . ID=Phyra75177.1;Parent=Phyra75177;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 450025 451136 . + . ID=Phyra75178;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000190;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 450025 451136 . + . ID=Phyra75178;Parent=Phyra75178;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 450025 450129 . + 0 ID=Phyra75178;Parent=Phyra75178;rank=1 scaffold_11 . exon 450025 450129 . + . ID=Phyra75178.1;Parent=Phyra75178;constitutive=1;rank=1 scaffold_11 . CDS 450198 451136 . + 0 ID=Phyra75178;Parent=Phyra75178;rank=2 scaffold_11 . exon 450198 451136 . + . ID=Phyra75178.2;Parent=Phyra75178;constitutive=1;rank=2 scaffold_11 ensembl protein_coding_gene 451529 453974 . + . ID=Phyra75179;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000191;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 451529 453974 . + . ID=Phyra75179;Parent=Phyra75179;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 451529 452531 . + 0 ID=Phyra75179;Parent=Phyra75179;rank=1 scaffold_11 . exon 451529 452531 . + . ID=Phyra75179.1;Parent=Phyra75179;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 452601 452726 . + 0 ID=Phyra75179;Parent=Phyra75179;rank=2 scaffold_11 . exon 452601 452726 . + . ID=Phyra75179.2;Parent=Phyra75179;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 452820 453580 . + 0 ID=Phyra75179;Parent=Phyra75179;rank=3 scaffold_11 . exon 452820 453580 . + . ID=Phyra75179.3;Parent=Phyra75179;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 453888 453974 . + 0 ID=Phyra75179;Parent=Phyra75179;rank=4 scaffold_11 . exon 453888 453974 . + . ID=Phyra75179.4;Parent=Phyra75179;constitutive=1;rank=4 scaffold_11 ensembl protein_coding_gene 454894 456142 . - . ID=Phyra75180;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000192;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 454894 456142 . - . ID=Phyra75180;Parent=Phyra75180;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 454894 455028 . - 0 ID=Phyra75180;Parent=Phyra75180;rank=7 scaffold_11 . exon 454894 455028 . - . ID=Phyra75180.7;Parent=Phyra75180;constitutive=1;rank=7 scaffold_11 . CDS 455096 455229 . - 0 ID=Phyra75180;Parent=Phyra75180;rank=6 scaffold_11 . exon 455096 455229 . - . ID=Phyra75180.6;Parent=Phyra75180;constitutive=1;ensembl_phase=1;rank=6 scaffold_11 . CDS 455295 455394 . - 0 ID=Phyra75180;Parent=Phyra75180;rank=5 scaffold_11 . exon 455295 455394 . - . ID=Phyra75180.5;Parent=Phyra75180;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_11 . CDS 455578 455653 . - 0 ID=Phyra75180;Parent=Phyra75180;rank=4 scaffold_11 . exon 455578 455653 . - . ID=Phyra75180.4;Parent=Phyra75180;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 455725 455838 . - 0 ID=Phyra75180;Parent=Phyra75180;rank=3 scaffold_11 . CDS 455911 455973 . - 0 ID=Phyra75180;Parent=Phyra75180;rank=2 scaffold_11 . CDS 456090 456142 . - 0 ID=Phyra75180;Parent=Phyra75180;rank=1 scaffold_11 . exon 445737 445814 . - . ID=Phyra94069.3;Parent=Phyra94069;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_11 . exon 445896 445977 . - . ID=Phyra94069.2;Parent=Phyra94069;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . exon 446059 446190 . - . ID=Phyra94069.1;Parent=Phyra94069;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 446488 447897 . - . ID=Phyra94070;biotype=protein_coding;external_name=C_scaffold_11000094;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 446488 447897 . - . ID=Phyra94070;Parent=Phyra94070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 446488 447114 . - 0 ID=Phyra94070;Parent=Phyra94070;rank=4 scaffold_11 . exon 446488 447114 . - . ID=Phyra94070.4;Parent=Phyra94070;constitutive=1;rank=4 scaffold_11 . CDS 447163 447429 . - 0 ID=Phyra94070;Parent=Phyra94070;rank=3 scaffold_11 . exon 447163 447429 . - . ID=Phyra94070.3;Parent=Phyra94070;constitutive=1;rank=3 scaffold_11 . CDS 447495 447714 . - 0 ID=Phyra94070;Parent=Phyra94070;rank=2 scaffold_11 . exon 447495 447714 . - . ID=Phyra94070.2;Parent=Phyra94070;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 447783 447895 . - 0 ID=Phyra94070;Parent=Phyra94070;rank=1 scaffold_11 . exon 447783 447897 . - . ID=Phyra94070.1;Parent=Phyra94070;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_11 . exon 455725 455838 . - . ID=Phyra75180.3;Parent=Phyra75180;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_11 . exon 455911 455973 . - . ID=Phyra75180.2;Parent=Phyra75180;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . exon 456090 456142 . - . ID=Phyra75180.1;Parent=Phyra75180;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 456282 456814 . + . ID=Phyra75181;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000193;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 456282 456814 . + . ID=Phyra75181;Parent=Phyra75181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 456282 456364 . + 0 ID=Phyra75181;Parent=Phyra75181;rank=1 scaffold_11 . exon 456282 456364 . + . ID=Phyra75181.1;Parent=Phyra75181;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 456436 456466 . + 0 ID=Phyra75181;Parent=Phyra75181;rank=2 scaffold_11 . exon 456436 456466 . + . ID=Phyra75181.2;Parent=Phyra75181;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 456531 456612 . + 0 ID=Phyra75181;Parent=Phyra75181;rank=3 scaffold_11 . exon 456531 456612 . + . ID=Phyra75181.3;Parent=Phyra75181;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . CDS 456690 456814 . + 0 ID=Phyra75181;Parent=Phyra75181;rank=4 scaffold_11 . exon 456690 456814 . + . ID=Phyra75181.4;Parent=Phyra75181;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 ensembl protein_coding_gene 457049 457620 . - . ID=Phyra75182;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000194;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 457049 457620 . - . ID=Phyra75182;Parent=Phyra75182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 457049 457182 . - 0 ID=Phyra75182;Parent=Phyra75182;rank=3 scaffold_11 . exon 457049 457182 . - . ID=Phyra75182.3;Parent=Phyra75182;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 457251 457363 . - 0 ID=Phyra75182;Parent=Phyra75182;rank=2 scaffold_11 . exon 457251 457363 . - . ID=Phyra75182.2;Parent=Phyra75182;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 457481 457620 . - 0 ID=Phyra75182;Parent=Phyra75182;rank=1 scaffold_11 . exon 457481 457620 . - . ID=Phyra75182.1;Parent=Phyra75182;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 457728 458237 . + . ID=Phyra75183;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000195;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 457728 458237 . + . ID=Phyra75183;Parent=Phyra75183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 457728 458237 . + 0 ID=Phyra75183;Parent=Phyra75183;rank=1 scaffold_11 . exon 457728 458237 . + . ID=Phyra75183.1;Parent=Phyra75183;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 458378 459682 . - . ID=Phyra75184;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000196;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 458378 459682 . - . ID=Phyra75184;Parent=Phyra75184;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 458378 459682 . - 0 ID=Phyra75184;Parent=Phyra75184;rank=1 scaffold_11 . exon 458378 459682 . - . ID=Phyra75184.1;Parent=Phyra75184;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 459902 460401 . + . ID=Phyra75185;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000197;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 459902 460401 . + . ID=Phyra75185;Parent=Phyra75185;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 459902 460006 . + 0 ID=Phyra75185;Parent=Phyra75185;rank=1 scaffold_11 . exon 459902 460006 . + . ID=Phyra75185.1;Parent=Phyra75185;constitutive=1;rank=1 scaffold_11 . CDS 460069 460123 . + 0 ID=Phyra75185;Parent=Phyra75185;rank=2 scaffold_11 . exon 460069 460123 . + . ID=Phyra75185.2;Parent=Phyra75185;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 460196 460401 . + 0 ID=Phyra75185;Parent=Phyra75185;rank=3 scaffold_11 . exon 460196 460401 . + . ID=Phyra75185.3;Parent=Phyra75185;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 ensembl protein_coding_gene 462525 463472 . - . ID=Phyra75186;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000198;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 462525 463472 . - . ID=Phyra75186;Parent=Phyra75186;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 462525 463472 . - 0 ID=Phyra75186;Parent=Phyra75186;rank=1 scaffold_11 . exon 462525 463472 . - . ID=Phyra75186.1;Parent=Phyra75186;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 463932 464996 . - . ID=Phyra75187;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000199;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 463932 464996 . - . ID=Phyra75187;Parent=Phyra75187;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 463932 464996 . - 0 ID=Phyra75187;Parent=Phyra75187;rank=1 scaffold_11 . exon 463932 464996 . - . ID=Phyra75187.1;Parent=Phyra75187;constitutive=1;rank=1 scaffold_11 . repeat_region 466508 466527 . ? . description=trf scaffold_11 . biological_region 467650 467650 0.999 + . logic_name=eponine scaffold_11 . biological_region 471001 471006 0.999 + . logic_name=eponine scaffold_11 . biological_region 471101 471103 0.999 - . logic_name=eponine scaffold_11 . repeat_region 472351 472377 . ? . description=trf scaffold_11 . repeat_region 472351 472377 . ? . description=dust scaffold_11 . repeat_region 472423 472464 . ? . description=trf scaffold_11 . repeat_region 473095 473139 . ? . description=trf scaffold_11 . repeat_region 473095 473139 . ? . description=trf scaffold_11 . repeat_region 473208 473247 . ? . description=trf scaffold_11 ensembl protein_coding_gene 466564 467193 . + . ID=Phyra71287;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000022;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 466564 467193 . + . ID=Phyra71287;Parent=Phyra71287;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 466564 467193 . + 0 ID=Phyra71287;Parent=Phyra71287;rank=1 scaffold_11 . exon 466564 467193 . + . ID=Phyra71287.1;Parent=Phyra71287;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 467584 469764 . + . ID=Phyra75189;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000201;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 467584 469764 . + . ID=Phyra75189;Parent=Phyra75189;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 467584 469764 . + 0 ID=Phyra75189;Parent=Phyra75189;rank=1 scaffold_11 . exon 467584 469764 . + . ID=Phyra75189.1;Parent=Phyra75189;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 469987 470529 . - . ID=Phyra75190;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000202;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 469987 470529 . - . ID=Phyra75190;Parent=Phyra75190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 469987 470529 . - 0 ID=Phyra75190;Parent=Phyra75190;rank=1 scaffold_11 . exon 469987 470529 . - . ID=Phyra75190.1;Parent=Phyra75190;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 471650 474204 . + . ID=Phyra75191;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000203;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 471650 474204 . + . ID=Phyra75191;Parent=Phyra75191;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 471650 471712 . + 0 ID=Phyra75191;Parent=Phyra75191;rank=1 scaffold_11 . exon 471650 471712 . + . ID=Phyra75191.1;Parent=Phyra75191;constitutive=1;rank=1 scaffold_11 . CDS 471785 471861 . + 0 ID=Phyra75191;Parent=Phyra75191;rank=2 scaffold_11 . exon 471785 471861 . + . ID=Phyra75191.2;Parent=Phyra75191;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . CDS 471933 474204 . + 0 ID=Phyra75191;Parent=Phyra75191;rank=3 scaffold_11 . exon 471933 474204 . + . ID=Phyra75191.3;Parent=Phyra75191;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 ensembl protein_coding_gene 477241 480522 . - . ID=Phyra75192;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000204;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 477241 480522 . - . ID=Phyra75192;Parent=Phyra75192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 477241 477643 . - 0 ID=Phyra75192;Parent=Phyra75192;rank=4 scaffold_11 . exon 477241 477643 . - . ID=Phyra75192.4;Parent=Phyra75192;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 477750 479104 . - 0 ID=Phyra75192;Parent=Phyra75192;rank=3 scaffold_11 . exon 477750 479104 . - . ID=Phyra75192.3;Parent=Phyra75192;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 479132 479249 . - 0 ID=Phyra75192;Parent=Phyra75192;rank=2 scaffold_11 . exon 479132 479249 . - . ID=Phyra75192.2;Parent=Phyra75192;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 479438 480522 . - 0 ID=Phyra75192;Parent=Phyra75192;rank=1 scaffold_11 . exon 479438 480522 . - . ID=Phyra75192.1;Parent=Phyra75192;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 480728 481261 . + . ID=Phyra75193;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000205;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 480728 481261 . + . ID=Phyra75193;Parent=Phyra75193;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 480728 480766 . + 0 ID=Phyra75193;Parent=Phyra75193;rank=1 scaffold_11 . exon 480728 480766 . + . ID=Phyra75193.1;Parent=Phyra75193;constitutive=1;rank=1 scaffold_11 . CDS 480834 480878 . + 0 ID=Phyra75193;Parent=Phyra75193;rank=2 scaffold_11 . exon 480834 480878 . + . ID=Phyra75193.2;Parent=Phyra75193;constitutive=1;rank=2 scaffold_11 . CDS 480956 481053 . + 0 ID=Phyra75193;Parent=Phyra75193;rank=3 scaffold_11 . exon 480956 481053 . + . ID=Phyra75193.3;Parent=Phyra75193;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 481129 481261 . + 0 ID=Phyra75193;Parent=Phyra75193;rank=4 scaffold_11 . exon 481129 481261 . + . ID=Phyra75193.4;Parent=Phyra75193;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 ensembl protein_coding_gene 481456 482614 . + . ID=Phyra75194;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000206;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 481456 482614 . + . ID=Phyra75194;Parent=Phyra75194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 481456 482099 . + 0 ID=Phyra75194;Parent=Phyra75194;rank=1 scaffold_11 . exon 481456 482099 . + . ID=Phyra75194.1;Parent=Phyra75194;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 482167 482299 . + 0 ID=Phyra75194;Parent=Phyra75194;rank=2 scaffold_11 . exon 482167 482299 . + . ID=Phyra75194.2;Parent=Phyra75194;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 482389 482442 . + 0 ID=Phyra75194;Parent=Phyra75194;rank=3 scaffold_11 . exon 482389 482442 . + . ID=Phyra75194.3;Parent=Phyra75194;constitutive=1;rank=3 scaffold_11 . CDS 482519 482614 . + 0 ID=Phyra75194;Parent=Phyra75194;rank=4 scaffold_11 . exon 482519 482614 . + . ID=Phyra75194.4;Parent=Phyra75194;constitutive=1;rank=4 scaffold_11 ensembl protein_coding_gene 483317 485689 . - . ID=Phyra75195;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000207;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 483317 485689 . - . ID=Phyra75195;Parent=Phyra75195;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 483317 484903 . - 0 ID=Phyra75195;Parent=Phyra75195;rank=3 scaffold_11 . exon 483317 484903 . - . ID=Phyra75195.3;Parent=Phyra75195;constitutive=1;rank=3 scaffold_11 . CDS 484953 485561 . - 0 ID=Phyra75195;Parent=Phyra75195;rank=2 scaffold_11 . exon 484953 485561 . - . ID=Phyra75195.2;Parent=Phyra75195;constitutive=1;rank=2 scaffold_11 . CDS 485639 485689 . - 0 ID=Phyra75195;Parent=Phyra75195;rank=1 scaffold_11 . repeat_region 485346 485399 . ? . description=trf scaffold_11 . repeat_region 485347 485400 . ? . description=trf scaffold_11 . repeat_region 485352 485400 . ? . description=trf scaffold_11 . repeat_region 485352 485400 . ? . description=dust scaffold_11 . biological_region 486594 486597 0.999 - . logic_name=eponine scaffold_11 . biological_region 489079 489082 0.999 + . logic_name=eponine scaffold_11 . biological_region 490455 490461 0.999 - . logic_name=eponine scaffold_11 . biological_region 490467 490468 0.999 + . logic_name=eponine scaffold_11 . biological_region 490591 490592 0.999 - . logic_name=eponine scaffold_11 . biological_region 490618 490619 0.999 + . logic_name=eponine scaffold_11 . biological_region 490642 490648 0.999 + . logic_name=eponine scaffold_11 . biological_region 490702 490705 0.999 - . logic_name=eponine scaffold_11 . biological_region 491954 491957 0.999 - . logic_name=eponine scaffold_11 . repeat_region 493513 493520 . ? . description=dust scaffold_11 . repeat_region 493541 493601 . ? . description=trf scaffold_11 . repeat_region 493911 493947 . ? . description=trf scaffold_11 . exon 485639 485689 . - . ID=Phyra75195.1;Parent=Phyra75195;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 486698 488020 . + . ID=Phyra75196;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000208;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 486698 488020 . + . ID=Phyra75196;Parent=Phyra75196;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 486698 488020 . + 0 ID=Phyra75196;Parent=Phyra75196;rank=1 scaffold_11 . exon 486698 488020 . + . ID=Phyra75196.1;Parent=Phyra75196;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 488397 489947 . - . ID=Phyra75197;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000209;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 488397 489947 . - . ID=Phyra75197;Parent=Phyra75197;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 488397 488417 . - 0 ID=Phyra75197;Parent=Phyra75197;rank=7 scaffold_11 . exon 488397 488417 . - . ID=Phyra75197.7;Parent=Phyra75197;constitutive=1;rank=7 scaffold_11 . CDS 488448 488829 . - 0 ID=Phyra75197;Parent=Phyra75197;rank=6 scaffold_11 . exon 488448 488829 . - . ID=Phyra75197.6;Parent=Phyra75197;constitutive=1;ensembl_phase=2;rank=6 scaffold_11 . CDS 488904 489004 . - 0 ID=Phyra75197;Parent=Phyra75197;rank=5 scaffold_11 . exon 488904 489004 . - . ID=Phyra75197.5;Parent=Phyra75197;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_11 . CDS 489076 489201 . - 0 ID=Phyra75197;Parent=Phyra75197;rank=4 scaffold_11 . exon 489076 489201 . - . ID=Phyra75197.4;Parent=Phyra75197;constitutive=1;rank=4 scaffold_11 . CDS 489284 489388 . - 0 ID=Phyra75197;Parent=Phyra75197;rank=3 scaffold_11 . exon 489284 489388 . - . ID=Phyra75197.3;Parent=Phyra75197;constitutive=1;rank=3 scaffold_11 . CDS 489454 489825 . - 0 ID=Phyra75197;Parent=Phyra75197;rank=2 scaffold_11 . exon 489454 489825 . - . ID=Phyra75197.2;Parent=Phyra75197;constitutive=1;rank=2 scaffold_11 . CDS 489888 489947 . - 0 ID=Phyra75197;Parent=Phyra75197;rank=1 scaffold_11 . exon 489888 489947 . - . ID=Phyra75197.1;Parent=Phyra75197;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 490348 491465 . + . ID=Phyra75198;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000210;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 490348 491465 . + . ID=Phyra75198;Parent=Phyra75198;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 490348 490839 . + 0 ID=Phyra75198;Parent=Phyra75198;rank=1 scaffold_11 . exon 490348 490839 . + . ID=Phyra75198.1;Parent=Phyra75198;constitutive=1;rank=1 scaffold_11 . CDS 490905 490985 . + 0 ID=Phyra75198;Parent=Phyra75198;rank=2 scaffold_11 . exon 490905 490985 . + . ID=Phyra75198.2;Parent=Phyra75198;constitutive=1;rank=2 scaffold_11 . CDS 491052 491465 . + 0 ID=Phyra75198;Parent=Phyra75198;rank=3 scaffold_11 . exon 491052 491465 . + . ID=Phyra75198.3;Parent=Phyra75198;constitutive=1;rank=3 scaffold_11 ensembl protein_coding_gene 491606 493248 . - . ID=Phyra75199;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000211;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 491606 493248 . - . ID=Phyra75199;Parent=Phyra75199;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 491606 491712 . - 0 ID=Phyra75199;Parent=Phyra75199;rank=6 scaffold_11 . exon 491606 491712 . - . ID=Phyra75199.6;Parent=Phyra75199;constitutive=1;ensembl_phase=1;rank=6 scaffold_11 . CDS 491820 491907 . - 0 ID=Phyra75199;Parent=Phyra75199;rank=5 scaffold_11 . exon 491820 491907 . - . ID=Phyra75199.5;Parent=Phyra75199;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_11 . CDS 491974 492262 . - 0 ID=Phyra75199;Parent=Phyra75199;rank=4 scaffold_11 . exon 491974 492262 . - . ID=Phyra75199.4;Parent=Phyra75199;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 492351 492502 . - 0 ID=Phyra75199;Parent=Phyra75199;rank=3 scaffold_11 . exon 492351 492502 . - . ID=Phyra75199.3;Parent=Phyra75199;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 492579 493074 . - 0 ID=Phyra75199;Parent=Phyra75199;rank=2 scaffold_11 . exon 492579 493074 . - . ID=Phyra75199.2;Parent=Phyra75199;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 493166 493248 . - 0 ID=Phyra75199;Parent=Phyra75199;rank=1 scaffold_11 . exon 493166 493248 . - . ID=Phyra75199.1;Parent=Phyra75199;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 493652 494978 . + . ID=Phyra75200;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000212;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 493652 494978 . + . ID=Phyra75200;Parent=Phyra75200;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 493652 493689 . + 0 ID=Phyra75200;Parent=Phyra75200;rank=1 scaffold_11 . exon 493652 493689 . + . ID=Phyra75200.1;Parent=Phyra75200;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 493839 494115 . + 0 ID=Phyra75200;Parent=Phyra75200;rank=2 scaffold_11 . exon 493839 494115 . + . ID=Phyra75200.2;Parent=Phyra75200;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 494201 494326 . + 0 ID=Phyra75200;Parent=Phyra75200;rank=3 scaffold_11 . exon 494201 494326 . + . ID=Phyra75200.3;Parent=Phyra75200;constitutive=1;rank=3 scaffold_11 . CDS 494397 494453 . + 0 ID=Phyra75200;Parent=Phyra75200;rank=4 scaffold_11 . exon 494397 494453 . + . ID=Phyra75200.4;Parent=Phyra75200;constitutive=1;rank=4 scaffold_11 . CDS 494527 494673 . + 0 ID=Phyra75200;Parent=Phyra75200;rank=5 scaffold_11 . exon 494527 494673 . + . ID=Phyra75200.5;Parent=Phyra75200;constitutive=1;rank=5 scaffold_11 . CDS 494751 494978 . + 0 ID=Phyra75200;Parent=Phyra75200;rank=6 scaffold_11 . exon 494751 494978 . + . ID=Phyra75200.6;Parent=Phyra75200;constitutive=1;rank=6 scaffold_11 ensembl protein_coding_gene 499281 499739 . + . ID=Phyra39722;biotype=protein_coding;external_name=gwEuk.11.168.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 499281 499739 . + . ID=Phyra39722;Parent=Phyra39722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 499281 499583 . + 0 ID=Phyra39722;Parent=Phyra39722;rank=1 scaffold_11 . exon 499281 499583 . + . ID=Phyra39722.1;Parent=Phyra39722;constitutive=1;rank=1 scaffold_11 . CDS 499650 499739 . + 0 ID=Phyra39722;Parent=Phyra39722;rank=2 scaffold_11 . exon 499650 499739 . + . ID=Phyra39722.2;Parent=Phyra39722;constitutive=1;rank=2 scaffold_11 ensembl protein_coding_gene 499883 500347 . - . ID=Phyra71289;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000024;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 499883 500347 . - . ID=Phyra71289;Parent=Phyra71289;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 499883 500347 . - 0 ID=Phyra71289;Parent=Phyra71289;rank=1 scaffold_11 . exon 499883 500347 . - . ID=Phyra71289.1;Parent=Phyra71289;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 500891 502369 . + . ID=Phyra71290;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000025;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 500891 502369 . + . ID=Phyra71290;Parent=Phyra71290;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 500891 501130 . + 0 ID=Phyra71290;Parent=Phyra71290;rank=1 scaffold_11 . exon 500891 501130 . + . ID=Phyra71290.1;Parent=Phyra71290;constitutive=1;rank=1 scaffold_11 . CDS 501200 502369 . + 0 ID=Phyra71290;Parent=Phyra71290;rank=2 scaffold_11 . exon 501200 502369 . + . ID=Phyra71290.2;Parent=Phyra71290;constitutive=1;rank=2 scaffold_11 ensembl protein_coding_gene 495332 496120 . - . ID=Phyra75201;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000213;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 495332 496120 . - . ID=Phyra75201;Parent=Phyra75201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 495332 496120 . - 0 ID=Phyra75201;Parent=Phyra75201;rank=1 scaffold_11 . exon 495332 496120 . - . ID=Phyra75201.1;Parent=Phyra75201;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 503639 503974 . + . ID=Phyra75205;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000217;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 503639 503974 . + . ID=Phyra75205;Parent=Phyra75205;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 503639 503974 . + 0 ID=Phyra75205;Parent=Phyra75205;rank=1 scaffold_11 . exon 503639 503974 . + . ID=Phyra75205.1;Parent=Phyra75205;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 504103 504775 . - . ID=Phyra75206;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000218;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 504103 504775 . - . ID=Phyra75206;Parent=Phyra75206;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 504103 504218 . - 0 ID=Phyra75206;Parent=Phyra75206;rank=2 scaffold_11 . exon 504103 504218 . - . ID=Phyra75206.2;Parent=Phyra75206;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 504286 504775 . - 0 ID=Phyra75206;Parent=Phyra75206;rank=1 scaffold_11 . exon 504286 504775 . - . ID=Phyra75206.1;Parent=Phyra75206;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . repeat_region 505628 505640 . ? . description=dust scaffold_11 . biological_region 505751 505755 0.999 - . logic_name=eponine scaffold_11 . repeat_region 511240 511283 . ? . description=dust scaffold_11 . repeat_region 511244 511283 . ? . description=trf scaffold_11 . repeat_region 511537 511562 . ? . description=trf scaffold_11 . repeat_region 511537 511562 . ? . description=dust scaffold_11 . biological_region 511655 511657 0.999 - . logic_name=eponine scaffold_11 . biological_region 512046 512047 0.999 + . logic_name=eponine scaffold_11 . biological_region 514610 514612 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 514718 515011 . - . ID=Phyra39737;biotype=protein_coding;external_name=gwEuk.11.183.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 514718 515011 . - . ID=Phyra39737;Parent=Phyra39737;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 514718 514880 . - 0 ID=Phyra39737;Parent=Phyra39737;rank=2 scaffold_11 . exon 514718 514880 . - . ID=Phyra39737.2;Parent=Phyra39737;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 514962 515011 . - 0 ID=Phyra39737;Parent=Phyra39737;rank=1 scaffold_11 . exon 514962 515011 . - . ID=Phyra39737.1;Parent=Phyra39737;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 505653 507495 . + . ID=Phyra75207;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000219;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 505653 507495 . + . ID=Phyra75207;Parent=Phyra75207;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 505653 505810 . + 0 ID=Phyra75207;Parent=Phyra75207;rank=1 scaffold_11 . exon 505653 505810 . + . ID=Phyra75207.1;Parent=Phyra75207;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 505876 505987 . + 0 ID=Phyra75207;Parent=Phyra75207;rank=2 scaffold_11 . exon 505876 505987 . + . ID=Phyra75207.2;Parent=Phyra75207;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 506066 506112 . + 0 ID=Phyra75207;Parent=Phyra75207;rank=3 scaffold_11 . exon 506066 506112 . + . ID=Phyra75207.3;Parent=Phyra75207;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 506189 506288 . + 0 ID=Phyra75207;Parent=Phyra75207;rank=4 scaffold_11 . exon 506189 506288 . + . ID=Phyra75207.4;Parent=Phyra75207;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 506366 506634 . + 0 ID=Phyra75207;Parent=Phyra75207;rank=5 scaffold_11 . exon 506366 506634 . + . ID=Phyra75207.5;Parent=Phyra75207;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_11 . CDS 506700 507006 . + 0 ID=Phyra75207;Parent=Phyra75207;rank=6 scaffold_11 . exon 506700 507006 . + . ID=Phyra75207.6;Parent=Phyra75207;constitutive=1;ensembl_phase=2;rank=6 scaffold_11 . CDS 507073 507495 . + 0 ID=Phyra75207;Parent=Phyra75207;rank=7 scaffold_11 . exon 507073 507495 . + . ID=Phyra75207.7;Parent=Phyra75207;constitutive=1;rank=7 scaffold_11 ensembl protein_coding_gene 507842 508264 . - . ID=Phyra75208;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000220;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 507842 508264 . - . ID=Phyra75208;Parent=Phyra75208;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 507842 508004 . - 0 ID=Phyra75208;Parent=Phyra75208;rank=2 scaffold_11 . exon 507842 508004 . - . ID=Phyra75208.2;Parent=Phyra75208;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 508077 508264 . - 0 ID=Phyra75208;Parent=Phyra75208;rank=1 scaffold_11 . exon 508077 508264 . - . ID=Phyra75208.1;Parent=Phyra75208;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 508519 509326 . - . ID=Phyra75209;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000221;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 508519 509326 . - . ID=Phyra75209;Parent=Phyra75209;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 508519 508653 . - 0 ID=Phyra75209;Parent=Phyra75209;rank=5 scaffold_11 . exon 508519 508653 . - . ID=Phyra75209.5;Parent=Phyra75209;constitutive=1;rank=5 scaffold_11 . CDS 508742 508772 . - 0 ID=Phyra75209;Parent=Phyra75209;rank=4 scaffold_11 . exon 508742 508772 . - . ID=Phyra75209.4;Parent=Phyra75209;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 508870 508954 . - 0 ID=Phyra75209;Parent=Phyra75209;rank=3 scaffold_11 . exon 508870 508954 . - . ID=Phyra75209.3;Parent=Phyra75209;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_11 . CDS 509080 509148 . - 0 ID=Phyra75209;Parent=Phyra75209;rank=2 scaffold_11 . exon 509080 509148 . - . ID=Phyra75209.2;Parent=Phyra75209;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 509278 509326 . - 0 ID=Phyra75209;Parent=Phyra75209;rank=1 scaffold_11 . exon 509278 509326 . - . ID=Phyra75209.1;Parent=Phyra75209;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 510252 511493 . - . ID=Phyra75211;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000223;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 510252 511493 . - . ID=Phyra75211;Parent=Phyra75211;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 510252 511493 . - 0 ID=Phyra75211;Parent=Phyra75211;rank=1 scaffold_11 . exon 510252 511493 . - . ID=Phyra75211.1;Parent=Phyra75211;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 511916 512950 . + . ID=Phyra75212;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000224;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 511916 512950 . + . ID=Phyra75212;Parent=Phyra75212;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 511916 512950 . + 0 ID=Phyra75212;Parent=Phyra75212;rank=1 scaffold_11 . exon 511916 512950 . + . ID=Phyra75212.1;Parent=Phyra75212;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 509526 510086 . + . ID=Phyra94080;biotype=protein_coding;external_name=C_scaffold_11000104;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 509526 510086 . + . ID=Phyra94080;Parent=Phyra94080;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 509526 509654 . + 0 ID=Phyra94080;Parent=Phyra94080;rank=1 scaffold_11 . exon 509526 509654 . + . ID=Phyra94080.1;Parent=Phyra94080;constitutive=1;rank=1 scaffold_11 . CDS 509721 509807 . + 0 ID=Phyra94080;Parent=Phyra94080;rank=2 scaffold_11 . exon 509721 509807 . + . ID=Phyra94080.2;Parent=Phyra94080;constitutive=1;rank=2 scaffold_11 . CDS 509884 509977 . + 0 ID=Phyra94080;Parent=Phyra94080;rank=3 scaffold_11 . exon 509884 509977 . + . ID=Phyra94080.3;Parent=Phyra94080;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . CDS 510046 510086 . + 0 ID=Phyra94080;Parent=Phyra94080;rank=4 scaffold_11 . exon 510046 510086 . + . ID=Phyra94080.4;Parent=Phyra94080;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 ensembl protein_coding_gene 515848 516798 . - . ID=Phyra75213;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000225;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 515848 516798 . - . ID=Phyra75213;Parent=Phyra75213;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 515848 515976 . - 0 ID=Phyra75213;Parent=Phyra75213;rank=3 scaffold_11 . exon 515848 515976 . - . ID=Phyra75213.3;Parent=Phyra75213;constitutive=1;rank=3 scaffold_11 . CDS 516052 516295 . - 0 ID=Phyra75213;Parent=Phyra75213;rank=2 scaffold_11 . exon 516052 516295 . - . ID=Phyra75213.2;Parent=Phyra75213;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 516353 516798 . - 0 ID=Phyra75213;Parent=Phyra75213;rank=1 scaffold_11 . exon 516353 516798 . - . ID=Phyra75213.1;Parent=Phyra75213;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 518020 523076 . - . ID=Phyra75215;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000227;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 518020 523076 . - . ID=Phyra75215;Parent=Phyra75215;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 518020 518310 . - 0 ID=Phyra75215;Parent=Phyra75215;rank=7 scaffold_11 . exon 518020 518310 . - . ID=Phyra75215.7;Parent=Phyra75215;constitutive=1;rank=7 scaffold_11 . CDS 518394 518634 . - 0 ID=Phyra75215;Parent=Phyra75215;rank=6 scaffold_11 . exon 518394 518634 . - . ID=Phyra75215.6;Parent=Phyra75215;constitutive=1;ensembl_phase=2;rank=6 scaffold_11 . CDS 518897 519033 . - 0 ID=Phyra75215;Parent=Phyra75215;rank=5 scaffold_11 . exon 518897 519033 . - . ID=Phyra75215.5;Parent=Phyra75215;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_11 . CDS 519111 519370 . - 0 ID=Phyra75215;Parent=Phyra75215;rank=4 scaffold_11 . exon 519111 519370 . - . ID=Phyra75215.4;Parent=Phyra75215;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 519779 520115 . - 0 ID=Phyra75215;Parent=Phyra75215;rank=3 scaffold_11 . exon 519779 520115 . - . ID=Phyra75215.3;Parent=Phyra75215;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . CDS 520336 520348 . - 0 ID=Phyra75215;Parent=Phyra75215;rank=2 scaffold_11 . exon 520336 520348 . - . ID=Phyra75215.2;Parent=Phyra75215;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 520369 523076 . - 0 ID=Phyra75215;Parent=Phyra75215;rank=1 scaffold_11 . exon 520369 523076 . - . ID=Phyra75215.1;Parent=Phyra75215;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 523919 526852 . - . ID=Phyra75216;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000228;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 523919 526852 . - . ID=Phyra75216;Parent=Phyra75216;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 523919 526852 . - 0 ID=Phyra75216;Parent=Phyra75216;rank=1 scaffold_11 . exon 523919 526852 . - . ID=Phyra75216.1;Parent=Phyra75216;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 517102 517455 . + . ID=Phyra94082;biotype=protein_coding;external_name=C_scaffold_11000106;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 517102 517455 . + . ID=Phyra94082;Parent=Phyra94082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 517102 517455 . + 0 ID=Phyra94082;Parent=Phyra94082;rank=1 scaffold_11 . exon 517102 517455 . + . ID=Phyra94082.1;Parent=Phyra94082;constitutive=1;rank=1 scaffold_11 . biological_region 526837 526842 0.999 - . logic_name=eponine scaffold_11 . repeat_region 527761 527787 . ? . description=dust scaffold_11 . repeat_region 527768 527787 . ? . description=trf scaffold_11 . biological_region 527823 527825 0.999 - . logic_name=eponine scaffold_11 . biological_region 528165 528165 0.999 - . logic_name=eponine scaffold_11 . biological_region 529591 529595 0.999 + . logic_name=eponine scaffold_11 . biological_region 529661 529662 0.999 - . logic_name=eponine scaffold_11 . repeat_region 531418 531455 . ? . description=trf scaffold_11 . repeat_region 531944 531968 . ? . description=trf scaffold_11 . repeat_region 532208 532259 . ? . description=trf scaffold_11 . biological_region 532992 532992 0.999 - . logic_name=eponine scaffold_11 . biological_region 534221 534223 0.999 + . logic_name=eponine scaffold_11 ensembl protein_coding_gene 526998 527907 . + . ID=Phyra75217;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000229;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 526998 527907 . + . ID=Phyra75217;Parent=Phyra75217;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 526998 527120 . + 0 ID=Phyra75217;Parent=Phyra75217;rank=1 scaffold_11 . exon 526998 527120 . + . ID=Phyra75217.1;Parent=Phyra75217;constitutive=1;rank=1 scaffold_11 . CDS 527216 527309 . + 0 ID=Phyra75217;Parent=Phyra75217;rank=2 scaffold_11 . exon 527216 527309 . + . ID=Phyra75217.2;Parent=Phyra75217;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 527387 527907 . + 0 ID=Phyra75217;Parent=Phyra75217;rank=3 scaffold_11 . exon 527387 527907 . + . ID=Phyra75217.3;Parent=Phyra75217;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 ensembl protein_coding_gene 528098 529690 . + . ID=Phyra75218;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000230;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 528098 529690 . + . ID=Phyra75218;Parent=Phyra75218;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 528098 528334 . + 0 ID=Phyra75218;Parent=Phyra75218;rank=1 scaffold_11 . exon 528098 528334 . + . ID=Phyra75218.1;Parent=Phyra75218;constitutive=1;rank=1 scaffold_11 . CDS 528407 528637 . + 0 ID=Phyra75218;Parent=Phyra75218;rank=2 scaffold_11 . exon 528407 528637 . + . ID=Phyra75218.2;Parent=Phyra75218;constitutive=1;rank=2 scaffold_11 . CDS 528710 529261 . + 0 ID=Phyra75218;Parent=Phyra75218;rank=3 scaffold_11 . exon 528710 529261 . + . ID=Phyra75218.3;Parent=Phyra75218;constitutive=1;rank=3 scaffold_11 . CDS 529334 529690 . + 0 ID=Phyra75218;Parent=Phyra75218;rank=4 scaffold_11 . exon 529334 529690 . + . ID=Phyra75218.4;Parent=Phyra75218;constitutive=1;rank=4 scaffold_11 ensembl protein_coding_gene 529901 533548 . + . ID=Phyra75219;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000231;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 529901 533548 . + . ID=Phyra75219;Parent=Phyra75219;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 529901 533548 . + 0 ID=Phyra75219;Parent=Phyra75219;rank=1 scaffold_11 . exon 529901 533548 . + . ID=Phyra75219.1;Parent=Phyra75219;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 533953 535810 . - . ID=Phyra75220;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000232;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 533953 535810 . - . ID=Phyra75220;Parent=Phyra75220;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 533953 534148 . - 0 ID=Phyra75220;Parent=Phyra75220;rank=6 scaffold_11 . exon 533953 534148 . - . ID=Phyra75220.6;Parent=Phyra75220;constitutive=1;ensembl_phase=2;rank=6 scaffold_11 . CDS 534232 534317 . - 0 ID=Phyra75220;Parent=Phyra75220;rank=5 scaffold_11 . exon 534232 534317 . - . ID=Phyra75220.5;Parent=Phyra75220;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_11 . CDS 534629 535190 . - 0 ID=Phyra75220;Parent=Phyra75220;rank=4 scaffold_11 . exon 534629 535190 . - . ID=Phyra75220.4;Parent=Phyra75220;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 535253 535255 . - 0 ID=Phyra75220;Parent=Phyra75220;rank=3 scaffold_11 . CDS 535398 535445 . - 0 ID=Phyra75220;Parent=Phyra75220;rank=2 scaffold_11 . CDS 535536 535810 . - 0 ID=Phyra75220;Parent=Phyra75220;rank=1 scaffold_11 . exon 535253 535255 . - . ID=Phyra75220.3;Parent=Phyra75220;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_11 . exon 535398 535445 . - . ID=Phyra75220.2;Parent=Phyra75220;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . exon 535536 535810 . - . ID=Phyra75220.1;Parent=Phyra75220;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 535983 537219 . + . ID=Phyra75221;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000233;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 535983 537219 . + . ID=Phyra75221;Parent=Phyra75221;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 535983 536264 . + 0 ID=Phyra75221;Parent=Phyra75221;rank=1 scaffold_11 . exon 535983 536264 . + . ID=Phyra75221.1;Parent=Phyra75221;constitutive=1;rank=1 scaffold_11 . CDS 536323 536448 . + 0 ID=Phyra75221;Parent=Phyra75221;rank=2 scaffold_11 . exon 536323 536448 . + . ID=Phyra75221.2;Parent=Phyra75221;constitutive=1;rank=2 scaffold_11 . CDS 536512 536631 . + 0 ID=Phyra75221;Parent=Phyra75221;rank=3 scaffold_11 . exon 536512 536631 . + . ID=Phyra75221.3;Parent=Phyra75221;constitutive=1;rank=3 scaffold_11 . CDS 536702 536827 . + 0 ID=Phyra75221;Parent=Phyra75221;rank=4 scaffold_11 . exon 536702 536827 . + . ID=Phyra75221.4;Parent=Phyra75221;constitutive=1;rank=4 scaffold_11 . CDS 536908 537219 . + 0 ID=Phyra75221;Parent=Phyra75221;rank=5 scaffold_11 . exon 536908 537219 . + . ID=Phyra75221.5;Parent=Phyra75221;constitutive=1;rank=5 scaffold_11 ensembl protein_coding_gene 537304 538296 . - . ID=Phyra75222;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000234;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 537304 538296 . - . ID=Phyra75222;Parent=Phyra75222;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 537304 538296 . - 0 ID=Phyra75222;Parent=Phyra75222;rank=1 scaffold_11 . exon 537304 538296 . - . ID=Phyra75222.1;Parent=Phyra75222;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 538676 539487 . - . ID=Phyra75223;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000235;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 538676 539487 . - . ID=Phyra75223;Parent=Phyra75223;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 538676 539088 . - 0 ID=Phyra75223;Parent=Phyra75223;rank=3 scaffold_11 . exon 538676 539088 . - . ID=Phyra75223.3;Parent=Phyra75223;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 539154 539304 . - 0 ID=Phyra75223;Parent=Phyra75223;rank=2 scaffold_11 . exon 539154 539304 . - . ID=Phyra75223.2;Parent=Phyra75223;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 539380 539487 . - 0 ID=Phyra75223;Parent=Phyra75223;rank=1 scaffold_11 . exon 539380 539487 . - . ID=Phyra75223.1;Parent=Phyra75223;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 540545 541503 . + . ID=Phyra75224;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000236;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 540545 541503 . + . ID=Phyra75224;Parent=Phyra75224;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 540545 540742 . + 0 ID=Phyra75224;Parent=Phyra75224;rank=1 scaffold_11 . exon 540545 540742 . + . ID=Phyra75224.1;Parent=Phyra75224;constitutive=1;rank=1 scaffold_11 . CDS 540784 540961 . + 0 ID=Phyra75224;Parent=Phyra75224;rank=2 scaffold_11 . exon 540784 540961 . + . ID=Phyra75224.2;Parent=Phyra75224;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 541034 541503 . + 0 ID=Phyra75224;Parent=Phyra75224;rank=3 scaffold_11 . exon 541034 541503 . + . ID=Phyra75224.3;Parent=Phyra75224;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . repeat_region 546005 546076 . ? . description=trf scaffold_11 ensembl protein_coding_gene 544811 546172 . + . ID=Phyra75225;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000237;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 544811 546172 . + . ID=Phyra75225;Parent=Phyra75225;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 544811 546172 . + 0 ID=Phyra75225;Parent=Phyra75225;rank=1 scaffold_11 . exon 544811 546172 . + . ID=Phyra75225.1;Parent=Phyra75225;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 546951 548303 . - . ID=Phyra75226;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000238;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 546951 548303 . - . ID=Phyra75226;Parent=Phyra75226;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 546951 548303 . - 0 ID=Phyra75226;Parent=Phyra75226;rank=1 scaffold_11 . exon 546951 548303 . - . ID=Phyra75226.1;Parent=Phyra75226;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 550459 551781 . + . ID=Phyra75227;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000239;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 550459 551781 . + . ID=Phyra75227;Parent=Phyra75227;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 550459 551781 . + 0 ID=Phyra75227;Parent=Phyra75227;rank=1 scaffold_11 . exon 550459 551781 . + . ID=Phyra75227.1;Parent=Phyra75227;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 552303 553409 . + . ID=Phyra75228;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000240;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 552303 553409 . + . ID=Phyra75228;Parent=Phyra75228;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 552303 552575 . + 0 ID=Phyra75228;Parent=Phyra75228;rank=1 scaffold_11 . exon 552303 552575 . + . ID=Phyra75228.1;Parent=Phyra75228;constitutive=1;rank=1 scaffold_11 . CDS 552632 553241 . + 0 ID=Phyra75228;Parent=Phyra75228;rank=2 scaffold_11 . exon 552632 553241 . + . ID=Phyra75228.2;Parent=Phyra75228;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 553324 553409 . + 0 ID=Phyra75228;Parent=Phyra75228;rank=3 scaffold_11 . exon 553324 553409 . + . ID=Phyra75228.3;Parent=Phyra75228;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 ensembl protein_coding_gene 553708 554812 . - . ID=Phyra75229;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000241;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 553708 554812 . - . ID=Phyra75229;Parent=Phyra75229;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 553708 553793 . - 0 ID=Phyra75229;Parent=Phyra75229;rank=3 scaffold_11 . exon 553708 553793 . - . ID=Phyra75229.3;Parent=Phyra75229;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 553863 554472 . - 0 ID=Phyra75229;Parent=Phyra75229;rank=2 scaffold_11 . exon 553863 554472 . - . ID=Phyra75229.2;Parent=Phyra75229;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 554540 554812 . - 0 ID=Phyra75229;Parent=Phyra75229;rank=1 scaffold_11 . exon 554540 554812 . - . ID=Phyra75229.1;Parent=Phyra75229;constitutive=1;rank=1 scaffold_11 . repeat_region 555485 555580 . ? . description=dust scaffold_11 . repeat_region 556371 556420 . ? . description=dust scaffold_11 . repeat_region 557878 557968 . ? . description=dust scaffold_11 . repeat_region 558387 558412 . ? . description=dust scaffold_11 . biological_region 560016 560016 0.999 - . logic_name=eponine scaffold_11 . biological_region 560070 560070 0.999 + . logic_name=eponine scaffold_11 . repeat_region 560955 564363 . ? . description=dust scaffold_11 ensembl protein_coding_gene 564365 564979 . + . ID=Phyra39767;biotype=protein_coding;external_name=gwEuk.11.213.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 564365 564979 . + . ID=Phyra39767;Parent=Phyra39767;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 564365 564827 . + 0 ID=Phyra39767;Parent=Phyra39767;rank=1 scaffold_11 . exon 564365 564827 . + . ID=Phyra39767.1;Parent=Phyra39767;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 564897 564979 . + 0 ID=Phyra39767;Parent=Phyra39767;rank=2 scaffold_11 ensembl protein_coding_gene 556051 557191 . - . ID=Phyra75230;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000242;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 556051 557191 . - . ID=Phyra75230;Parent=Phyra75230;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 556051 556069 . - 0 ID=Phyra75230;Parent=Phyra75230;rank=3 scaffold_11 . exon 556051 556069 . - . ID=Phyra75230.3;Parent=Phyra75230;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 556424 556851 . - 0 ID=Phyra75230;Parent=Phyra75230;rank=2 scaffold_11 . exon 556424 556851 . - . ID=Phyra75230.2;Parent=Phyra75230;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . CDS 556919 557191 . - 0 ID=Phyra75230;Parent=Phyra75230;rank=1 scaffold_11 . exon 556919 557191 . - . ID=Phyra75230.1;Parent=Phyra75230;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 559004 560206 . - . ID=Phyra75231;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000243;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 559004 560206 . - . ID=Phyra75231;Parent=Phyra75231;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 559004 560206 . - 0 ID=Phyra75231;Parent=Phyra75231;rank=1 scaffold_11 . exon 559004 560206 . - . ID=Phyra75231.1;Parent=Phyra75231;constitutive=1;rank=1 scaffold_11 . exon 564897 564979 . + . ID=Phyra39767.2;Parent=Phyra39767;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 ensembl protein_coding_gene 565281 566387 . - . ID=Phyra75232;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000244;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 565281 566387 . - . ID=Phyra75232;Parent=Phyra75232;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 565281 565366 . - 0 ID=Phyra75232;Parent=Phyra75232;rank=3 scaffold_11 . exon 565281 565366 . - . ID=Phyra75232.3;Parent=Phyra75232;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 565449 566058 . - 0 ID=Phyra75232;Parent=Phyra75232;rank=2 scaffold_11 . exon 565449 566058 . - . ID=Phyra75232.2;Parent=Phyra75232;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 566115 566387 . - 0 ID=Phyra75232;Parent=Phyra75232;rank=1 scaffold_11 . exon 566115 566387 . - . ID=Phyra75232.1;Parent=Phyra75232;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 567447 567872 . + . ID=Phyra75233;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000245;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 567447 567872 . + . ID=Phyra75233;Parent=Phyra75233;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 567447 567872 . + 0 ID=Phyra75233;Parent=Phyra75233;rank=1 scaffold_11 . exon 567447 567872 . + . ID=Phyra75233.1;Parent=Phyra75233;constitutive=1;rank=1 scaffold_11 . repeat_region 575025 575037 . ? . description=dust scaffold_11 . biological_region 575672 575673 0.999 - . logic_name=eponine scaffold_11 . repeat_region 576587 576594 . ? . description=dust scaffold_11 . repeat_region 577296 577303 . ? . description=dust scaffold_11 . repeat_region 579082 579106 . ? . description=trf scaffold_11 . repeat_region 579445 579455 . ? . description=dust scaffold_11 . biological_region 579463 579466 0.999 - . logic_name=eponine scaffold_11 . repeat_region 582115 582298 . ? . description=dust scaffold_11 . biological_region 584146 584148 0.999 + . logic_name=eponine scaffold_11 ensembl protein_coding_gene 589446 590820 . - . ID=Phyra75234;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000246;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 589446 590820 . - . ID=Phyra75234;Parent=Phyra75234;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 589446 589484 . - 0 ID=Phyra75234;Parent=Phyra75234;rank=4 scaffold_11 . exon 589446 589484 . - . ID=Phyra75234.4;Parent=Phyra75234;constitutive=1;rank=4 scaffold_11 . CDS 589543 589752 . - 0 ID=Phyra75234;Parent=Phyra75234;rank=3 scaffold_11 . exon 589543 589752 . - . ID=Phyra75234.3;Parent=Phyra75234;constitutive=1;rank=3 scaffold_11 . CDS 589795 590194 . - 0 ID=Phyra75234;Parent=Phyra75234;rank=2 scaffold_11 . exon 589795 590194 . - . ID=Phyra75234.2;Parent=Phyra75234;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 590459 590820 . - 0 ID=Phyra75234;Parent=Phyra75234;rank=1 scaffold_11 . exon 590459 590820 . - . ID=Phyra75234.1;Parent=Phyra75234;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . biological_region 597107 597107 0.999 - . logic_name=eponine scaffold_11 . biological_region 597161 597161 0.999 + . logic_name=eponine scaffold_11 . repeat_region 602870 602891 . ? . description=trf scaffold_11 ensembl protein_coding_gene 596991 598022 . + . ID=Phyra39775;biotype=protein_coding;external_name=gwEuk.11.221.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 596991 598022 . + . ID=Phyra39775;Parent=Phyra39775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 596991 598022 . + 0 ID=Phyra39775;Parent=Phyra39775;rank=1 scaffold_11 . exon 596991 598022 . + . ID=Phyra39775.1;Parent=Phyra39775;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 598798 599826 . + . ID=Phyra75236;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000248;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 598798 599826 . + . ID=Phyra75236;Parent=Phyra75236;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 598798 599064 . + 0 ID=Phyra75236;Parent=Phyra75236;rank=1 scaffold_11 . exon 598798 599064 . + . ID=Phyra75236.1;Parent=Phyra75236;constitutive=1;rank=1 scaffold_11 . CDS 599130 599728 . + 0 ID=Phyra75236;Parent=Phyra75236;rank=2 scaffold_11 . exon 599130 599728 . + . ID=Phyra75236.2;Parent=Phyra75236;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . CDS 599811 599826 . + 0 ID=Phyra75236;Parent=Phyra75236;rank=3 scaffold_11 . exon 599811 599826 . + . ID=Phyra75236.3;Parent=Phyra75236;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 ensembl protein_coding_gene 600782 601902 . + . ID=Phyra75237;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000249;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 600782 601902 . + . ID=Phyra75237;Parent=Phyra75237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 600782 601051 . + 0 ID=Phyra75237;Parent=Phyra75237;rank=1 scaffold_11 . exon 600782 601051 . + . ID=Phyra75237.1;Parent=Phyra75237;constitutive=1;rank=1 scaffold_11 . CDS 601118 601730 . + 0 ID=Phyra75237;Parent=Phyra75237;rank=2 scaffold_11 . exon 601118 601730 . + . ID=Phyra75237.2;Parent=Phyra75237;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 601817 601902 . + 0 ID=Phyra75237;Parent=Phyra75237;rank=3 scaffold_11 . exon 601817 601902 . + . ID=Phyra75237.3;Parent=Phyra75237;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 ensembl protein_coding_gene 602963 604077 . + . ID=Phyra75238;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000250;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 602963 604077 . + . ID=Phyra75238;Parent=Phyra75238;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 602963 603232 . + 0 ID=Phyra75238;Parent=Phyra75238;rank=1 scaffold_11 . exon 602963 603232 . + . ID=Phyra75238.1;Parent=Phyra75238;constitutive=1;rank=1 scaffold_11 . CDS 603295 603907 . + 0 ID=Phyra75238;Parent=Phyra75238;rank=2 scaffold_11 . exon 603295 603907 . + . ID=Phyra75238.2;Parent=Phyra75238;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 603992 604077 . + 0 ID=Phyra75238;Parent=Phyra75238;rank=3 scaffold_11 . exon 603992 604077 . + . ID=Phyra75238.3;Parent=Phyra75238;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . repeat_region 612248 612279 . ? . description=dust scaffold_11 ensembl protein_coding_gene 611174 611437 . - . ID=Phyra39792;biotype=protein_coding;external_name=gwEuk.11.238.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 611174 611437 . - . ID=Phyra39792;Parent=Phyra39792;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 611174 611437 . - 0 ID=Phyra39792;Parent=Phyra39792;rank=1 scaffold_11 . exon 611174 611437 . - . ID=Phyra39792.1;Parent=Phyra39792;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 606218 606825 . + . ID=Phyra75239;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000251;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 606218 606825 . + . ID=Phyra75239;Parent=Phyra75239;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 606218 606447 . + 0 ID=Phyra75239;Parent=Phyra75239;rank=1 scaffold_11 . exon 606218 606447 . + . ID=Phyra75239.1;Parent=Phyra75239;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 606567 606825 . + 0 ID=Phyra75239;Parent=Phyra75239;rank=2 scaffold_11 . exon 606567 606825 . + . ID=Phyra75239.2;Parent=Phyra75239;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 ensembl protein_coding_gene 606979 607680 . - . ID=Phyra75240;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000252;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 606979 607680 . - . ID=Phyra75240;Parent=Phyra75240;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 606979 607295 . - 0 ID=Phyra75240;Parent=Phyra75240;rank=2 scaffold_11 . exon 606979 607295 . - . ID=Phyra75240.2;Parent=Phyra75240;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 607392 607680 . - 0 ID=Phyra75240;Parent=Phyra75240;rank=1 scaffold_11 . exon 607392 607680 . - . ID=Phyra75240.1;Parent=Phyra75240;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 607956 608898 . + . ID=Phyra75241;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000253;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 607956 608898 . + . ID=Phyra75241;Parent=Phyra75241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 607956 608388 . + 0 ID=Phyra75241;Parent=Phyra75241;rank=1 scaffold_11 . exon 607956 608388 . + . ID=Phyra75241.1;Parent=Phyra75241;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 608465 608898 . + 0 ID=Phyra75241;Parent=Phyra75241;rank=2 scaffold_11 . exon 608465 608898 . + . ID=Phyra75241.2;Parent=Phyra75241;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 ensembl protein_coding_gene 609002 609697 . - . ID=Phyra75242;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000254;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 609002 609697 . - . ID=Phyra75242;Parent=Phyra75242;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 609002 609697 . - 0 ID=Phyra75242;Parent=Phyra75242;rank=1 scaffold_11 . exon 609002 609697 . - . ID=Phyra75242.1;Parent=Phyra75242;constitutive=1;rank=1 scaffold_11 . repeat_region 614267 614319 . ? . description=trf scaffold_11 . repeat_region 614267 614324 . ? . description=trf scaffold_11 . biological_region 615460 615463 0.999 + . logic_name=eponine scaffold_11 . repeat_region 616744 616785 . ? . description=trf scaffold_11 . biological_region 619801 619801 0.999 + . logic_name=eponine scaffold_11 . biological_region 619820 619823 0.999 + . logic_name=eponine scaffold_11 . biological_region 619849 619851 0.999 - . logic_name=eponine scaffold_11 . repeat_region 620438 620461 . ? . description=trf scaffold_11 . repeat_region 620674 620705 . ? . description=trf scaffold_11 . biological_region 622589 622590 0.999 - . logic_name=eponine scaffold_11 . biological_region 623493 623496 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 614053 614992 . - . ID=Phyra75243;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000255;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 614053 614992 . - . ID=Phyra75243;Parent=Phyra75243;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 614053 614258 . - 0 ID=Phyra75243;Parent=Phyra75243;rank=2 scaffold_11 . exon 614053 614258 . - . ID=Phyra75243.2;Parent=Phyra75243;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 614323 614992 . - 0 ID=Phyra75243;Parent=Phyra75243;rank=1 scaffold_11 . exon 614323 614992 . - . ID=Phyra75243.1;Parent=Phyra75243;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 615373 620946 . - . ID=Phyra75244;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000256;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 615373 620946 . - . ID=Phyra75244;Parent=Phyra75244;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 615373 620946 . - 0 ID=Phyra75244;Parent=Phyra75244;rank=1 scaffold_11 . exon 615373 620946 . - . ID=Phyra75244.1;Parent=Phyra75244;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 622317 624303 . + . ID=Phyra75245;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000257;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 622317 624303 . + . ID=Phyra75245;Parent=Phyra75245;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 622317 623583 . + 0 ID=Phyra75245;Parent=Phyra75245;rank=1 scaffold_11 . exon 622317 623583 . + . ID=Phyra75245.1;Parent=Phyra75245;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 623945 624303 . + 0 ID=Phyra75245;Parent=Phyra75245;rank=2 scaffold_11 . exon 623945 624303 . + . ID=Phyra75245.2;Parent=Phyra75245;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . repeat_region 625701 625709 . ? . description=dust scaffold_11 . repeat_region 631256 631263 . ? . description=dust scaffold_11 ensembl protein_coding_gene 632683 632937 . + . ID=Phyra39809;biotype=protein_coding;external_name=gwEuk.11.255.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 632683 632937 . + . ID=Phyra39809;Parent=Phyra39809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 632683 632937 . + 0 ID=Phyra39809;Parent=Phyra39809;rank=1 scaffold_11 . exon 632683 632937 . + . ID=Phyra39809.1;Parent=Phyra39809;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 626335 627273 . + . ID=Phyra75246;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000258;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 626335 627273 . + . ID=Phyra75246;Parent=Phyra75246;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 626335 627273 . + 0 ID=Phyra75246;Parent=Phyra75246;rank=1 scaffold_11 . exon 626335 627273 . + . ID=Phyra75246.1;Parent=Phyra75246;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 627383 628885 . - . ID=Phyra75247;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000259;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 627383 628885 . - . ID=Phyra75247;Parent=Phyra75247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 627383 628885 . - 0 ID=Phyra75247;Parent=Phyra75247;rank=1 scaffold_11 . exon 627383 628885 . - . ID=Phyra75247.1;Parent=Phyra75247;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 629540 631105 . + . ID=Phyra75248;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000260;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 629540 631105 . + . ID=Phyra75248;Parent=Phyra75248;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 629540 631105 . + 0 ID=Phyra75248;Parent=Phyra75248;rank=1 scaffold_11 . exon 629540 631105 . + . ID=Phyra75248.1;Parent=Phyra75248;constitutive=1;rank=1 scaffold_11 . repeat_region 638250 638276 . ? . description=trf scaffold_11 . repeat_region 640114 640140 . ? . description=trf scaffold_11 ensembl protein_coding_gene 638001 638468 . + . ID=Phyra75250;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000262;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 638001 638468 . + . ID=Phyra75250;Parent=Phyra75250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 638001 638468 . + 0 ID=Phyra75250;Parent=Phyra75250;rank=1 scaffold_11 . exon 638001 638468 . + . ID=Phyra75250.1;Parent=Phyra75250;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 639865 640332 . + . ID=Phyra75251;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000263;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 639865 640332 . + . ID=Phyra75251;Parent=Phyra75251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 639865 640332 . + 0 ID=Phyra75251;Parent=Phyra75251;rank=1 scaffold_11 . exon 639865 640332 . + . ID=Phyra75251.1;Parent=Phyra75251;constitutive=1;rank=1 scaffold_11 . repeat_region 647045 647853 . ? . description=dust scaffold_11 . repeat_region 649132 655636 . ? . description=dust scaffold_11 ensembl protein_coding_gene 644193 645205 . + . ID=Phyra71291;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_11000026;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 644193 645205 . + . ID=Phyra71291;Parent=Phyra71291;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 644193 644223 . + 0 ID=Phyra71291;Parent=Phyra71291;rank=1 scaffold_11 . exon 644193 644223 . + . ID=Phyra71291.1;Parent=Phyra71291;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 644283 645205 . + 0 ID=Phyra71291;Parent=Phyra71291;rank=2 scaffold_11 . exon 644283 645205 . + . ID=Phyra71291.2;Parent=Phyra71291;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 ensembl protein_coding_gene 657717 657932 . - . ID=Phyra39820;biotype=protein_coding;external_name=gwEuk.11.266.1;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 657717 657932 . - . ID=Phyra39820;Parent=Phyra39820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 657717 657800 . - 0 ID=Phyra39820;Parent=Phyra39820;rank=2 scaffold_11 . exon 657717 657800 . - . ID=Phyra39820.2;Parent=Phyra39820;constitutive=1;rank=2 scaffold_11 . CDS 657855 657932 . - 0 ID=Phyra39820;Parent=Phyra39820;rank=1 scaffold_11 . exon 657855 657932 . - . ID=Phyra39820.1;Parent=Phyra39820;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 662829 664842 . - . ID=Phyra75253;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_11000265;logic_name=jgi_phyra1 scaffold_11 ensembl transcript 662829 664842 . - . ID=Phyra75253;Parent=Phyra75253;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_11 . CDS 662829 662886 . - 0 ID=Phyra75253;Parent=Phyra75253;rank=5 scaffold_11 . exon 662829 662886 . - . ID=Phyra75253.5;Parent=Phyra75253;constitutive=1;ensembl_phase=2;rank=5 scaffold_11 . CDS 663001 663038 . - 0 ID=Phyra75253;Parent=Phyra75253;rank=4 scaffold_11 . exon 663001 663038 . - . ID=Phyra75253.4;Parent=Phyra75253;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_11 . CDS 663510 663532 . - 0 ID=Phyra75253;Parent=Phyra75253;rank=3 scaffold_11 . exon 663510 663532 . - . ID=Phyra75253.3;Parent=Phyra75253;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 663851 663947 . - 0 ID=Phyra75253;Parent=Phyra75253;rank=2 scaffold_11 . CDS 664057 664842 . - 0 ID=Phyra75253;Parent=Phyra75253;rank=1 scaffold_11 . repeat_region 664435 664443 . ? . description=dust scaffold_11 . repeat_region 665593 673562 . ? . description=dust scaffold_11 . exon 663851 663947 . - . ID=Phyra75253.2;Parent=Phyra75253;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . exon 664057 664842 . - . ID=Phyra75253.1;Parent=Phyra75253;constitutive=1;rank=1 scaffold_11 . biological_region 674396 674398 0.999 - . logic_name=eponine scaffold_11 . repeat_region 681601 691644 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_10 1 705838 scaffold_10 . repeat_region 1037 1056 . ? . description=trf scaffold_10 . repeat_region 1553 7494 . ? . description=dust scaffold_10 . repeat_region 7541 7561 . ? . description=trf scaffold_10 . repeat_region 7541 7561 . ? . description=dust scaffold_10 . repeat_region 7556 7806 . + . description=Polinton-1_PI scaffold_10 . repeat_region 8412 27706 . ? . description=dust scaffold_10 ensembl protein_coding_gene 503 1006 . - . ID=Phyra74786;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000001;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 503 1006 . - . ID=Phyra74786;Parent=Phyra74786;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 503 1006 . - 0 ID=Phyra74786;Parent=Phyra74786;rank=1 scaffold_10 . exon 503 1006 . - . ID=Phyra74786.1;Parent=Phyra74786;constitutive=1;rank=1 scaffold_10 . repeat_region 8412 27706 . ? . description=dust scaffold_10 ensembl protein_coding_gene 28676 30529 . - . ID=Phyra74787;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000002;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 28676 30529 . - . ID=Phyra74787;Parent=Phyra74787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 28676 30529 . - 0 ID=Phyra74787;Parent=Phyra74787;rank=1 scaffold_10 . exon 28676 30529 . - . ID=Phyra74787.1;Parent=Phyra74787;constitutive=1;rank=1 scaffold_10 . repeat_region 31923 31945 . ? . description=trf scaffold_10 . biological_region 38753 38753 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 38527 39851 . - . ID=Phyra71248;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_10000001;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 38527 39851 . - . ID=Phyra71248;Parent=Phyra71248;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 38527 39327 . - 0 ID=Phyra71248;Parent=Phyra71248;rank=3 scaffold_10 . exon 38527 39327 . - . ID=Phyra71248.3;Parent=Phyra71248;constitutive=1;rank=3 scaffold_10 . CDS 39393 39449 . - 0 ID=Phyra71248;Parent=Phyra71248;rank=2 scaffold_10 . exon 39393 39449 . - . ID=Phyra71248.2;Parent=Phyra71248;constitutive=1;rank=2 scaffold_10 . CDS 39525 39851 . - 0 ID=Phyra71248;Parent=Phyra71248;rank=1 scaffold_10 . exon 39525 39851 . - . ID=Phyra71248.1;Parent=Phyra71248;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 31897 33545 . - . ID=Phyra74788;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000003;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 31897 33545 . - . ID=Phyra74788;Parent=Phyra74788;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 31897 32033 . - 0 ID=Phyra74788;Parent=Phyra74788;rank=4 scaffold_10 . exon 31897 32033 . - . ID=Phyra74788.4;Parent=Phyra74788;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 32174 32196 . - 0 ID=Phyra74788;Parent=Phyra74788;rank=3 scaffold_10 . exon 32174 32196 . - . ID=Phyra74788.3;Parent=Phyra74788;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 32264 32475 . - 0 ID=Phyra74788;Parent=Phyra74788;rank=2 scaffold_10 . exon 32264 32475 . - . ID=Phyra74788.2;Parent=Phyra74788;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 32547 33545 . - 0 ID=Phyra74788;Parent=Phyra74788;rank=1 scaffold_10 . exon 32547 33545 . - . ID=Phyra74788.1;Parent=Phyra74788;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 33652 36108 . - . ID=Phyra74789;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000004;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 33652 36108 . - . ID=Phyra74789;Parent=Phyra74789;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 33652 35997 . - 0 ID=Phyra74789;Parent=Phyra74789;rank=2 scaffold_10 . exon 33652 35997 . - . ID=Phyra74789.2;Parent=Phyra74789;constitutive=1;rank=2 scaffold_10 . CDS 36079 36108 . - 0 ID=Phyra74789;Parent=Phyra74789;rank=1 scaffold_10 . exon 36079 36108 . - . ID=Phyra74789.1;Parent=Phyra74789;constitutive=1;rank=1 scaffold_10 . repeat_region 45987 45995 . ? . description=dust scaffold_10 ensembl protein_coding_gene 40960 43542 . + . ID=Phyra71249;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_10000002;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 40960 43542 . + . ID=Phyra71249;Parent=Phyra71249;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 40960 40977 . + 0 ID=Phyra71249;Parent=Phyra71249;rank=1 scaffold_10 . exon 40960 40977 . + . ID=Phyra71249.1;Parent=Phyra71249;constitutive=1;rank=1 scaffold_10 . CDS 41095 43053 . + 0 ID=Phyra71249;Parent=Phyra71249;rank=2 scaffold_10 . exon 41095 43053 . + . ID=Phyra71249.2;Parent=Phyra71249;constitutive=1;rank=2 scaffold_10 . CDS 43126 43260 . + 0 ID=Phyra71249;Parent=Phyra71249;rank=3 scaffold_10 . exon 43126 43260 . + . ID=Phyra71249.3;Parent=Phyra71249;constitutive=1;rank=3 scaffold_10 . CDS 43366 43542 . + 0 ID=Phyra71249;Parent=Phyra71249;rank=4 scaffold_10 . exon 43366 43542 . + . ID=Phyra71249.4;Parent=Phyra71249;constitutive=1;rank=4 scaffold_10 ensembl protein_coding_gene 48512 50428 . + . ID=Phyra74792;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000007;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 48512 50428 . + . ID=Phyra74792;Parent=Phyra74792;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 48512 50390 . + 0 ID=Phyra74792;Parent=Phyra74792;rank=1 scaffold_10 . exon 48512 50390 . + . ID=Phyra74792.1;Parent=Phyra74792;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 50418 50428 . + 0 ID=Phyra74792;Parent=Phyra74792;rank=2 scaffold_10 . biological_region 55187 55192 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 56686 58017 . - . ID=Phyra71250;biotype=protein_coding;description=Translation elongation factor 1 alpha [Source:UniProtKB/TrEMBL%3BAcc:Q697S9];external_name=EF-1ALPHA;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 56686 58017 . - . ID=Phyra71250;Parent=Phyra71250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 56686 58017 . - 0 ID=Phyra71250;Parent=Phyra71250;rank=1 scaffold_10 . exon 56686 58017 . - . ID=Phyra71250.1;Parent=Phyra71250;constitutive=1;rank=1 scaffold_10 . exon 50418 50428 . + . ID=Phyra74792.2;Parent=Phyra74792;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 ensembl protein_coding_gene 50903 53348 . - . ID=Phyra74793;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000008;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 50903 53348 . - . ID=Phyra74793;Parent=Phyra74793;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 50903 52294 . - 0 ID=Phyra74793;Parent=Phyra74793;rank=5 scaffold_10 . exon 50903 52294 . - . ID=Phyra74793.5;Parent=Phyra74793;constitutive=1;rank=5 scaffold_10 . CDS 52370 52717 . - 0 ID=Phyra74793;Parent=Phyra74793;rank=4 scaffold_10 . exon 52370 52717 . - . ID=Phyra74793.4;Parent=Phyra74793;constitutive=1;rank=4 scaffold_10 . CDS 52803 53027 . - 0 ID=Phyra74793;Parent=Phyra74793;rank=3 scaffold_10 . exon 52803 53027 . - . ID=Phyra74793.3;Parent=Phyra74793;constitutive=1;rank=3 scaffold_10 . CDS 53092 53325 . - 0 ID=Phyra74793;Parent=Phyra74793;rank=2 scaffold_10 . exon 53092 53325 . - . ID=Phyra74793.2;Parent=Phyra74793;constitutive=1;rank=2 scaffold_10 . CDS 53346 53348 . - 0 ID=Phyra74793;Parent=Phyra74793;rank=1 scaffold_10 . exon 53346 53348 . - . ID=Phyra74793.1;Parent=Phyra74793;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 53896 56366 . + . ID=Phyra74794;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000009;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 53896 56366 . + . ID=Phyra74794;Parent=Phyra74794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 53896 55295 . + 0 ID=Phyra74794;Parent=Phyra74794;rank=1 scaffold_10 . exon 53896 55295 . + . ID=Phyra74794.1;Parent=Phyra74794;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 55338 55751 . + 0 ID=Phyra74794;Parent=Phyra74794;rank=2 scaffold_10 . exon 55338 55751 . + . ID=Phyra74794.2;Parent=Phyra74794;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_10 . CDS 55812 56007 . + 0 ID=Phyra74794;Parent=Phyra74794;rank=3 scaffold_10 . exon 55812 56007 . + . ID=Phyra74794.3;Parent=Phyra74794;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 56052 56366 . + 0 ID=Phyra74794;Parent=Phyra74794;rank=4 scaffold_10 . exon 56052 56366 . + . ID=Phyra74794.4;Parent=Phyra74794;constitutive=1;rank=4 scaffold_10 ensembl protein_coding_gene 58404 58964 . - . ID=Phyra74796;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000011;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 58404 58964 . - . ID=Phyra74796;Parent=Phyra74796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 58404 58633 . - 0 ID=Phyra74796;Parent=Phyra74796;rank=2 scaffold_10 . exon 58404 58633 . - . ID=Phyra74796.2;Parent=Phyra74796;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 58724 58964 . - 0 ID=Phyra74796;Parent=Phyra74796;rank=1 scaffold_10 . exon 58724 58964 . - . ID=Phyra74796.1;Parent=Phyra74796;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 59462 66039 . + . ID=Phyra74797;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000012;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 59462 66039 . + . ID=Phyra74797;Parent=Phyra74797;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 59462 62167 . + 0 ID=Phyra74797;Parent=Phyra74797;rank=1 scaffold_10 . exon 59462 62167 . + . ID=Phyra74797.1;Parent=Phyra74797;constitutive=1;rank=1 scaffold_10 . CDS 62197 66039 . + 0 ID=Phyra74797;Parent=Phyra74797;rank=2 scaffold_10 . repeat_region 62974 63007 . ? . description=dust scaffold_10 . exon 62197 66039 . + . ID=Phyra74797.2;Parent=Phyra74797;constitutive=1;rank=2 scaffold_10 ensembl protein_coding_gene 66205 68055 . - . ID=Phyra74798;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000013;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 66205 68055 . - . ID=Phyra74798;Parent=Phyra74798;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 66205 68055 . - 0 ID=Phyra74798;Parent=Phyra74798;rank=1 scaffold_10 . exon 66205 68055 . - . ID=Phyra74798.1;Parent=Phyra74798;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 68815 71648 . + . ID=Phyra93920;biotype=protein_coding;external_name=C_scaffold_10000001;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 68815 71648 . + . ID=Phyra93920;Parent=Phyra93920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 68815 68933 . + 0 ID=Phyra93920;Parent=Phyra93920;rank=1 scaffold_10 . exon 68815 68933 . + . ID=Phyra93920.1;Parent=Phyra93920;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 69000 69727 . + 0 ID=Phyra93920;Parent=Phyra93920;rank=2 scaffold_10 . exon 69000 69727 . + . ID=Phyra93920.2;Parent=Phyra93920;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 69995 70012 . + 0 ID=Phyra93920;Parent=Phyra93920;rank=3 scaffold_10 . CDS 70105 70173 . + 0 ID=Phyra93920;Parent=Phyra93920;rank=4 scaffold_10 . CDS 70632 70868 . + 0 ID=Phyra93920;Parent=Phyra93920;rank=5 scaffold_10 . CDS 71064 71106 . + 0 ID=Phyra93920;Parent=Phyra93920;rank=6 scaffold_10 . CDS 71183 71244 . + 0 ID=Phyra93920;Parent=Phyra93920;rank=7 scaffold_10 . CDS 71312 71470 . + 0 ID=Phyra93920;Parent=Phyra93920;rank=8 scaffold_10 . CDS 71527 71648 . + 0 ID=Phyra93920;Parent=Phyra93920;rank=9 scaffold_10 . biological_region 73727 73734 0.999 + . logic_name=eponine scaffold_10 . biological_region 74809 74814 0.999 - . logic_name=eponine scaffold_10 . biological_region 75430 75433 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 75153 76171 . + . ID=Phyra71251;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_10000004;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 75153 76171 . + . ID=Phyra71251;Parent=Phyra71251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 75153 76018 . + 0 ID=Phyra71251;Parent=Phyra71251;rank=1 scaffold_10 . exon 75153 76018 . + . ID=Phyra71251.1;Parent=Phyra71251;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 76099 76171 . + 0 ID=Phyra71251;Parent=Phyra71251;rank=2 scaffold_10 . exon 76099 76171 . + . ID=Phyra71251.2;Parent=Phyra71251;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 ensembl protein_coding_gene 73651 75009 . - . ID=Phyra74800;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000015;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 73651 75009 . - . ID=Phyra74800;Parent=Phyra74800;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 73651 74027 . - 0 ID=Phyra74800;Parent=Phyra74800;rank=6 scaffold_10 . exon 73651 74027 . - . ID=Phyra74800.6;Parent=Phyra74800;constitutive=1;ensembl_phase=1;rank=6 scaffold_10 . CDS 74088 74169 . - 0 ID=Phyra74800;Parent=Phyra74800;rank=5 scaffold_10 . exon 74088 74169 . - . ID=Phyra74800.5;Parent=Phyra74800;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_10 . CDS 74238 74334 . - 0 ID=Phyra74800;Parent=Phyra74800;rank=4 scaffold_10 . exon 74238 74334 . - . ID=Phyra74800.4;Parent=Phyra74800;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 74439 74453 . - 0 ID=Phyra74800;Parent=Phyra74800;rank=3 scaffold_10 . exon 74439 74453 . - . ID=Phyra74800.3;Parent=Phyra74800;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_10 . CDS 74525 74905 . - 0 ID=Phyra74800;Parent=Phyra74800;rank=2 scaffold_10 . exon 74525 74905 . - . ID=Phyra74800.2;Parent=Phyra74800;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_10 . CDS 75005 75009 . - 0 ID=Phyra74800;Parent=Phyra74800;rank=1 scaffold_10 . exon 75005 75009 . - . ID=Phyra74800.1;Parent=Phyra74800;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 76354 80816 . - . ID=Phyra74802;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000017;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 76354 80816 . - . ID=Phyra74802;Parent=Phyra74802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 76354 79446 . - 0 ID=Phyra74802;Parent=Phyra74802;rank=4 scaffold_10 . exon 76354 79446 . - . ID=Phyra74802.4;Parent=Phyra74802;constitutive=1;rank=4 scaffold_10 . CDS 79529 79696 . - 0 ID=Phyra74802;Parent=Phyra74802;rank=3 scaffold_10 . exon 79529 79696 . - . ID=Phyra74802.3;Parent=Phyra74802;constitutive=1;rank=3 scaffold_10 . CDS 80179 80399 . - 0 ID=Phyra74802;Parent=Phyra74802;rank=2 scaffold_10 . CDS 80465 80816 . - 0 ID=Phyra74802;Parent=Phyra74802;rank=1 scaffold_10 . exon 69995 70012 . + . ID=Phyra93920.3;Parent=Phyra93920;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_10 . exon 70105 70173 . + . ID=Phyra93920.4;Parent=Phyra93920;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_10 . exon 70632 70868 . + . ID=Phyra93920.5;Parent=Phyra93920;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_10 . exon 71064 71106 . + . ID=Phyra93920.6;Parent=Phyra93920;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_10 . exon 71183 71244 . + . ID=Phyra93920.7;Parent=Phyra93920;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_10 . exon 71312 71470 . + . ID=Phyra93920.8;Parent=Phyra93920;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_10 . exon 71527 71648 . + . ID=Phyra93920.9;Parent=Phyra93920;constitutive=1;ensembl_phase=1;rank=9 scaffold_10 . repeat_region 83169 83178 . ? . description=dust scaffold_10 . repeat_region 84893 84900 . ? . description=dust scaffold_10 . repeat_region 85630 85637 . ? . description=dust scaffold_10 . repeat_region 86134 86142 . ? . description=dust scaffold_10 . repeat_region 87767 87776 . ? . description=dust scaffold_10 . repeat_region 88911 88918 . ? . description=dust scaffold_10 . repeat_region 89234 89441 . ? . description=trf scaffold_10 . repeat_region 89395 89612 . ? . description=trf scaffold_10 ensembl protein_coding_gene 85103 85800 . - . ID=Phyra39037;biotype=protein_coding;external_name=gwEuk.10.125.1;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 85103 85800 . - . ID=Phyra39037;Parent=Phyra39037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 85103 85533 . - 0 ID=Phyra39037;Parent=Phyra39037;rank=2 scaffold_10 . exon 85103 85533 . - . ID=Phyra39037.2;Parent=Phyra39037;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 85599 85800 . - 0 ID=Phyra39037;Parent=Phyra39037;rank=1 scaffold_10 . exon 85599 85800 . - . ID=Phyra39037.1;Parent=Phyra39037;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . exon 80179 80399 . - . ID=Phyra74802.2;Parent=Phyra74802;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . exon 80465 80816 . - . ID=Phyra74802.1;Parent=Phyra74802;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 81479 82978 . + . ID=Phyra74803;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000018;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 81479 82978 . + . ID=Phyra74803;Parent=Phyra74803;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 81479 82978 . + 0 ID=Phyra74803;Parent=Phyra74803;rank=1 scaffold_10 . exon 81479 82978 . + . ID=Phyra74803.1;Parent=Phyra74803;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 83311 84444 . - . ID=Phyra74804;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000019;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 83311 84444 . - . ID=Phyra74804;Parent=Phyra74804;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 83311 84444 . - 0 ID=Phyra74804;Parent=Phyra74804;rank=1 scaffold_10 . exon 83311 84444 . - . ID=Phyra74804.1;Parent=Phyra74804;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 86703 87689 . + . ID=Phyra74805;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000020;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 86703 87689 . + . ID=Phyra74805;Parent=Phyra74805;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 86703 87689 . + 0 ID=Phyra74805;Parent=Phyra74805;rank=1 scaffold_10 . exon 86703 87689 . + . ID=Phyra74805.1;Parent=Phyra74805;constitutive=1;rank=1 scaffold_10 . biological_region 94471 94475 0.999 + . logic_name=eponine scaffold_10 . biological_region 95301 95302 0.999 - . logic_name=eponine scaffold_10 . biological_region 98731 98731 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 91747 97251 . + . ID=Phyra74806;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000021;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 91747 97251 . + . ID=Phyra74806;Parent=Phyra74806;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 91747 95403 . + 0 ID=Phyra74806;Parent=Phyra74806;rank=1 scaffold_10 . exon 91747 95403 . + . ID=Phyra74806.1;Parent=Phyra74806;constitutive=1;rank=1 scaffold_10 . CDS 95758 97251 . + 0 ID=Phyra74806;Parent=Phyra74806;rank=2 scaffold_10 . exon 95758 97251 . + . ID=Phyra74806.2;Parent=Phyra74806;constitutive=1;rank=2 scaffold_10 ensembl protein_coding_gene 98399 99728 . + . ID=Phyra74807;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000022;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 98399 99728 . + . ID=Phyra74807;Parent=Phyra74807;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 98399 99677 . + 0 ID=Phyra74807;Parent=Phyra74807;rank=1 scaffold_10 . exon 98399 99677 . + . ID=Phyra74807.1;Parent=Phyra74807;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 99718 99728 . + 0 ID=Phyra74807;Parent=Phyra74807;rank=2 scaffold_10 . repeat_region 106647 106655 . ? . description=dust scaffold_10 . exon 99718 99728 . + . ID=Phyra74807.2;Parent=Phyra74807;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 ensembl protein_coding_gene 107748 108953 . + . ID=Phyra74810;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000025;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 107748 108953 . + . ID=Phyra74810;Parent=Phyra74810;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 107748 108953 . + 0 ID=Phyra74810;Parent=Phyra74810;rank=1 scaffold_10 . exon 107748 108953 . + . ID=Phyra74810.1;Parent=Phyra74810;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 99891 101205 . - . ID=Phyra93922;biotype=protein_coding;external_name=C_scaffold_10000003;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 99891 101205 . - . ID=Phyra93922;Parent=Phyra93922;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 99891 100288 . - 0 ID=Phyra93922;Parent=Phyra93922;rank=3 scaffold_10 . exon 99891 100288 . - . ID=Phyra93922.3;Parent=Phyra93922;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 100356 100815 . - 0 ID=Phyra93922;Parent=Phyra93922;rank=2 scaffold_10 . exon 100356 100815 . - . ID=Phyra93922.2;Parent=Phyra93922;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 100870 101205 . - 0 ID=Phyra93922;Parent=Phyra93922;rank=1 scaffold_10 . exon 100870 101205 . - . ID=Phyra93922.1;Parent=Phyra93922;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 101379 106277 . + . ID=Phyra93923;biotype=protein_coding;external_name=C_scaffold_10000004;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 101379 106277 . + . ID=Phyra93923;Parent=Phyra93923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 101379 101859 . + 0 ID=Phyra93923;Parent=Phyra93923;rank=1 scaffold_10 . exon 101379 101859 . + . ID=Phyra93923.1;Parent=Phyra93923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 101924 102362 . + 0 ID=Phyra93923;Parent=Phyra93923;rank=2 scaffold_10 . exon 101924 102362 . + . ID=Phyra93923.2;Parent=Phyra93923;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_10 . CDS 102442 103044 . + 0 ID=Phyra93923;Parent=Phyra93923;rank=3 scaffold_10 . exon 102442 103044 . + . ID=Phyra93923.3;Parent=Phyra93923;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_10 . CDS 103331 104114 . + 0 ID=Phyra93923;Parent=Phyra93923;rank=4 scaffold_10 . exon 103331 104114 . + . ID=Phyra93923.4;Parent=Phyra93923;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 104157 104705 . + 0 ID=Phyra93923;Parent=Phyra93923;rank=5 scaffold_10 . exon 104157 104705 . + . ID=Phyra93923.5;Parent=Phyra93923;constitutive=1;rank=5 scaffold_10 . CDS 105237 106040 . + 0 ID=Phyra93923;Parent=Phyra93923;rank=6 scaffold_10 . exon 105237 106040 . + . ID=Phyra93923.6;Parent=Phyra93923;constitutive=1;rank=6 scaffold_10 . CDS 106083 106277 . + 0 ID=Phyra93923;Parent=Phyra93923;rank=7 scaffold_10 . exon 106083 106277 . + . ID=Phyra93923.7;Parent=Phyra93923;constitutive=1;rank=7 scaffold_10 . biological_region 112747 112750 0.999 + . logic_name=eponine scaffold_10 . biological_region 112762 112767 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 112878 114329 . - . ID=Phyra39039;biotype=protein_coding;external_name=gwEuk.10.127.1;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 112878 114329 . - . ID=Phyra39039;Parent=Phyra39039;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 112878 112941 . - 0 ID=Phyra39039;Parent=Phyra39039;rank=7 scaffold_10 . exon 112878 112941 . - . ID=Phyra39039.7;Parent=Phyra39039;constitutive=1;ensembl_phase=2;rank=7 scaffold_10 . CDS 113022 113147 . - 0 ID=Phyra39039;Parent=Phyra39039;rank=6 scaffold_10 . exon 113022 113147 . - . ID=Phyra39039.6;Parent=Phyra39039;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_10 . CDS 113217 113347 . - 0 ID=Phyra39039;Parent=Phyra39039;rank=5 scaffold_10 . exon 113217 113347 . - . ID=Phyra39039.5;Parent=Phyra39039;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_10 . CDS 113429 113871 . - 0 ID=Phyra39039;Parent=Phyra39039;rank=4 scaffold_10 . exon 113429 113871 . - . ID=Phyra39039.4;Parent=Phyra39039;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 113964 114054 . - 0 ID=Phyra39039;Parent=Phyra39039;rank=3 scaffold_10 . exon 113964 114054 . - . ID=Phyra39039.3;Parent=Phyra39039;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 114142 114219 . - 0 ID=Phyra39039;Parent=Phyra39039;rank=2 scaffold_10 . exon 114142 114219 . - . ID=Phyra39039.2;Parent=Phyra39039;constitutive=1;rank=2 scaffold_10 . CDS 114279 114329 . - 0 ID=Phyra39039;Parent=Phyra39039;rank=1 scaffold_10 . exon 114279 114329 . - . ID=Phyra39039.1;Parent=Phyra39039;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 110236 112472 . - . ID=Phyra74811;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000026;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 110236 112472 . - . ID=Phyra74811;Parent=Phyra74811;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 110236 110790 . - 0 ID=Phyra74811;Parent=Phyra74811;rank=4 scaffold_10 . exon 110236 110790 . - . ID=Phyra74811.4;Parent=Phyra74811;constitutive=1;rank=4 scaffold_10 . CDS 110975 111199 . - 0 ID=Phyra74811;Parent=Phyra74811;rank=3 scaffold_10 . exon 110975 111199 . - . ID=Phyra74811.3;Parent=Phyra74811;constitutive=1;rank=3 scaffold_10 . CDS 111414 111862 . - 0 ID=Phyra74811;Parent=Phyra74811;rank=2 scaffold_10 . exon 111414 111862 . - . ID=Phyra74811.2;Parent=Phyra74811;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 111920 112472 . - 0 ID=Phyra74811;Parent=Phyra74811;rank=1 scaffold_10 . exon 111920 112472 . - . ID=Phyra74811.1;Parent=Phyra74811;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 116493 117743 . + . ID=Phyra74814;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000029;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 116493 117743 . + . ID=Phyra74814;Parent=Phyra74814;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 116493 117743 . + 0 ID=Phyra74814;Parent=Phyra74814;rank=1 scaffold_10 . exon 116493 117743 . + . ID=Phyra74814.1;Parent=Phyra74814;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 117842 118292 . - . ID=Phyra74815;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000030;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 117842 118292 . - . ID=Phyra74815;Parent=Phyra74815;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 117842 118083 . - 0 ID=Phyra74815;Parent=Phyra74815;rank=2 scaffold_10 . exon 117842 118083 . - . ID=Phyra74815.2;Parent=Phyra74815;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 118157 118292 . - 0 ID=Phyra74815;Parent=Phyra74815;rank=1 scaffold_10 . exon 118157 118292 . - . ID=Phyra74815.1;Parent=Phyra74815;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 118418 120014 . - . ID=Phyra74816;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000031;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 118418 120014 . - . ID=Phyra74816;Parent=Phyra74816;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 118418 118582 . - 0 ID=Phyra74816;Parent=Phyra74816;rank=8 scaffold_10 . exon 118418 118582 . - . ID=Phyra74816.8;Parent=Phyra74816;constitutive=1;rank=8 scaffold_10 . CDS 118643 118778 . - 0 ID=Phyra74816;Parent=Phyra74816;rank=7 scaffold_10 . exon 118643 118778 . - . ID=Phyra74816.7;Parent=Phyra74816;constitutive=1;ensembl_phase=2;rank=7 scaffold_10 . CDS 118846 119033 . - 0 ID=Phyra74816;Parent=Phyra74816;rank=6 scaffold_10 . exon 118846 119033 . - . ID=Phyra74816.6;Parent=Phyra74816;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_10 . CDS 119109 119228 . - 0 ID=Phyra74816;Parent=Phyra74816;rank=5 scaffold_10 . exon 119109 119228 . - . ID=Phyra74816.5;Parent=Phyra74816;constitutive=1;rank=5 scaffold_10 . CDS 119317 119396 . - 0 ID=Phyra74816;Parent=Phyra74816;rank=4 scaffold_10 . CDS 119466 119614 . - 0 ID=Phyra74816;Parent=Phyra74816;rank=3 scaffold_10 . CDS 119814 119887 . - 0 ID=Phyra74816;Parent=Phyra74816;rank=2 scaffold_10 . CDS 119967 120014 . - 0 ID=Phyra74816;Parent=Phyra74816;rank=1 scaffold_10 . repeat_region 125484 125517 . ? . description=trf scaffold_10 . exon 119317 119396 . - . ID=Phyra74816.4;Parent=Phyra74816;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . exon 119466 119614 . - . ID=Phyra74816.3;Parent=Phyra74816;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_10 . exon 119814 119887 . - . ID=Phyra74816.2;Parent=Phyra74816;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . exon 119967 120014 . - . ID=Phyra74816.1;Parent=Phyra74816;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 121149 125220 . + . ID=Phyra74817;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000032;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 121149 125220 . + . ID=Phyra74817;Parent=Phyra74817;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 121149 121307 . + 0 ID=Phyra74817;Parent=Phyra74817;rank=1 scaffold_10 . exon 121149 121307 . + . ID=Phyra74817.1;Parent=Phyra74817;constitutive=1;rank=1 scaffold_10 . CDS 121380 121590 . + 0 ID=Phyra74817;Parent=Phyra74817;rank=2 scaffold_10 . exon 121380 121590 . + . ID=Phyra74817.2;Parent=Phyra74817;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 121647 122256 . + 0 ID=Phyra74817;Parent=Phyra74817;rank=3 scaffold_10 . exon 121647 122256 . + . ID=Phyra74817.3;Parent=Phyra74817;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_10 . CDS 122535 123003 . + 0 ID=Phyra74817;Parent=Phyra74817;rank=4 scaffold_10 . exon 122535 123003 . + . ID=Phyra74817.4;Parent=Phyra74817;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 123088 123262 . + 0 ID=Phyra74817;Parent=Phyra74817;rank=5 scaffold_10 . exon 123088 123262 . + . ID=Phyra74817.5;Parent=Phyra74817;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_10 . CDS 123332 125220 . + 0 ID=Phyra74817;Parent=Phyra74817;rank=6 scaffold_10 . exon 123332 125220 . + . ID=Phyra74817.6;Parent=Phyra74817;constitutive=1;ensembl_phase=1;rank=6 scaffold_10 ensembl protein_coding_gene 125338 130029 . - . ID=Phyra74818;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000033;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 125338 130029 . - . ID=Phyra74818;Parent=Phyra74818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 125338 127751 . - 0 ID=Phyra74818;Parent=Phyra74818;rank=5 scaffold_10 . exon 125338 127751 . - . ID=Phyra74818.5;Parent=Phyra74818;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 . CDS 128002 128472 . - 0 ID=Phyra74818;Parent=Phyra74818;rank=4 scaffold_10 . exon 128002 128472 . - . ID=Phyra74818.4;Parent=Phyra74818;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 128773 129652 . - 0 ID=Phyra74818;Parent=Phyra74818;rank=3 scaffold_10 . exon 128773 129652 . - . ID=Phyra74818.3;Parent=Phyra74818;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 129716 129765 . - 0 ID=Phyra74818;Parent=Phyra74818;rank=2 scaffold_10 . CDS 129831 130029 . - 0 ID=Phyra74818;Parent=Phyra74818;rank=1 scaffold_10 . biological_region 134066 134068 0.999 - . logic_name=eponine scaffold_10 . repeat_region 134749 134798 . ? . description=dust scaffold_10 . repeat_region 136696 139390 . ? . description=dust scaffold_10 ensembl protein_coding_gene 134830 135321 . - . ID=Phyra39059;biotype=protein_coding;external_name=gwEuk.10.147.1;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 134830 135321 . - . ID=Phyra39059;Parent=Phyra39059;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 134830 135321 . - 0 ID=Phyra39059;Parent=Phyra39059;rank=1 scaffold_10 . exon 134830 135321 . - . ID=Phyra39059.1;Parent=Phyra39059;constitutive=1;rank=1 scaffold_10 . exon 129716 129765 . - . ID=Phyra74818.2;Parent=Phyra74818;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . exon 129831 130029 . - . ID=Phyra74818.1;Parent=Phyra74818;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 131122 132926 . + . ID=Phyra74819;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000034;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 131122 132926 . + . ID=Phyra74819;Parent=Phyra74819;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 131122 131191 . + 0 ID=Phyra74819;Parent=Phyra74819;rank=1 scaffold_10 . exon 131122 131191 . + . ID=Phyra74819.1;Parent=Phyra74819;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 131256 131418 . + 0 ID=Phyra74819;Parent=Phyra74819;rank=2 scaffold_10 . exon 131256 131418 . + . ID=Phyra74819.2;Parent=Phyra74819;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_10 . CDS 131492 132926 . + 0 ID=Phyra74819;Parent=Phyra74819;rank=3 scaffold_10 . exon 131492 132926 . + . ID=Phyra74819.3;Parent=Phyra74819;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 ensembl protein_coding_gene 133950 134708 . + . ID=Phyra74820;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000035;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 133950 134708 . + . ID=Phyra74820;Parent=Phyra74820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 133950 134708 . + 0 ID=Phyra74820;Parent=Phyra74820;rank=1 scaffold_10 . exon 133950 134708 . + . ID=Phyra74820.1;Parent=Phyra74820;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 140172 140690 . - . ID=Phyra74822;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000037;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 140172 140690 . - . ID=Phyra74822;Parent=Phyra74822;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 140172 140690 . - 0 ID=Phyra74822;Parent=Phyra74822;rank=1 scaffold_10 . exon 140172 140690 . - . ID=Phyra74822.1;Parent=Phyra74822;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 142779 143682 . + . ID=Phyra74823;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000038;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 142779 143682 . + . ID=Phyra74823;Parent=Phyra74823;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 142779 142942 . + 0 ID=Phyra74823;Parent=Phyra74823;rank=1 scaffold_10 . exon 142779 142942 . + . ID=Phyra74823.1;Parent=Phyra74823;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 143019 143682 . + 0 ID=Phyra74823;Parent=Phyra74823;rank=2 scaffold_10 . exon 143019 143682 . + . ID=Phyra74823.2;Parent=Phyra74823;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 ensembl protein_coding_gene 144448 147874 . - . ID=Phyra74824;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000039;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 144448 147874 . - . ID=Phyra74824;Parent=Phyra74824;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 144448 144830 . - 0 ID=Phyra74824;Parent=Phyra74824;rank=6 scaffold_10 . exon 144448 144830 . - . ID=Phyra74824.6;Parent=Phyra74824;constitutive=1;ensembl_phase=1;rank=6 scaffold_10 . CDS 144907 144973 . - 0 ID=Phyra74824;Parent=Phyra74824;rank=5 scaffold_10 . exon 144907 144973 . - . ID=Phyra74824.5;Parent=Phyra74824;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_10 . CDS 145049 145084 . - 0 ID=Phyra74824;Parent=Phyra74824;rank=4 scaffold_10 . exon 145049 145084 . - . ID=Phyra74824.4;Parent=Phyra74824;constitutive=1;rank=4 scaffold_10 . CDS 145217 146596 . - 0 ID=Phyra74824;Parent=Phyra74824;rank=3 scaffold_10 . exon 145217 146596 . - . ID=Phyra74824.3;Parent=Phyra74824;constitutive=1;rank=3 scaffold_10 . CDS 146667 146810 . - 0 ID=Phyra74824;Parent=Phyra74824;rank=2 scaffold_10 . exon 146667 146810 . - . ID=Phyra74824.2;Parent=Phyra74824;constitutive=1;rank=2 scaffold_10 . CDS 146873 147874 . - 0 ID=Phyra74824;Parent=Phyra74824;rank=1 scaffold_10 . exon 146873 147874 . - . ID=Phyra74824.1;Parent=Phyra74824;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 148050 149154 . + . ID=Phyra74825;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000040;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 148050 149154 . + . ID=Phyra74825;Parent=Phyra74825;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 148050 148526 . + 0 ID=Phyra74825;Parent=Phyra74825;rank=1 scaffold_10 . exon 148050 148526 . + . ID=Phyra74825.1;Parent=Phyra74825;constitutive=1;rank=1 scaffold_10 . CDS 148589 148733 . + 0 ID=Phyra74825;Parent=Phyra74825;rank=2 scaffold_10 . exon 148589 148733 . + . ID=Phyra74825.2;Parent=Phyra74825;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 148803 148934 . + 0 ID=Phyra74825;Parent=Phyra74825;rank=3 scaffold_10 . exon 148803 148934 . + . ID=Phyra74825.3;Parent=Phyra74825;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 148955 149154 . + 0 ID=Phyra74825;Parent=Phyra74825;rank=4 scaffold_10 . exon 148955 149154 . + . ID=Phyra74825.4;Parent=Phyra74825;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . biological_region 155320 155321 0.999 - . logic_name=eponine scaffold_10 . repeat_region 158997 159004 . ? . description=dust scaffold_10 ensembl protein_coding_gene 157425 158354 . + . ID=Phyra71253;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_10000006;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 157425 158354 . + . ID=Phyra71253;Parent=Phyra71253;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 157425 158354 . + 0 ID=Phyra71253;Parent=Phyra71253;rank=1 scaffold_10 . exon 157425 158354 . + . ID=Phyra71253.1;Parent=Phyra71253;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 150052 155226 . - . ID=Phyra74826;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000041;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 150052 155226 . - . ID=Phyra74826;Parent=Phyra74826;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 150052 150065 . - 0 ID=Phyra74826;Parent=Phyra74826;rank=7 scaffold_10 . exon 150052 150065 . - . ID=Phyra74826.7;Parent=Phyra74826;constitutive=1;ensembl_phase=1;rank=7 scaffold_10 . CDS 150334 150936 . - 0 ID=Phyra74826;Parent=Phyra74826;rank=6 scaffold_10 . exon 150334 150936 . - . ID=Phyra74826.6;Parent=Phyra74826;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_10 . CDS 151009 151160 . - 0 ID=Phyra74826;Parent=Phyra74826;rank=5 scaffold_10 . exon 151009 151160 . - . ID=Phyra74826.5;Parent=Phyra74826;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 151374 151517 . - 0 ID=Phyra74826;Parent=Phyra74826;rank=4 scaffold_10 . exon 151374 151517 . - . ID=Phyra74826.4;Parent=Phyra74826;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_10 . CDS 151589 151645 . - 0 ID=Phyra74826;Parent=Phyra74826;rank=3 scaffold_10 . exon 151589 151645 . - . ID=Phyra74826.3;Parent=Phyra74826;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_10 . CDS 151889 152533 . - 0 ID=Phyra74826;Parent=Phyra74826;rank=2 scaffold_10 . exon 151889 152533 . - . ID=Phyra74826.2;Parent=Phyra74826;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_10 . CDS 153125 155226 . - 0 ID=Phyra74826;Parent=Phyra74826;rank=1 scaffold_10 . exon 153125 155226 . - . ID=Phyra74826.1;Parent=Phyra74826;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 161666 162679 . + . ID=Phyra71254;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_10000007;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 161666 162679 . + . ID=Phyra71254;Parent=Phyra71254;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 161666 162679 . + 0 ID=Phyra71254;Parent=Phyra71254;rank=1 scaffold_10 . exon 161666 162679 . + . ID=Phyra71254.1;Parent=Phyra71254;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 165573 166863 . - . ID=Phyra71255;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_10000008;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 165573 166863 . - . ID=Phyra71255;Parent=Phyra71255;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 165573 166218 . - 0 ID=Phyra71255;Parent=Phyra71255;rank=4 scaffold_10 . exon 165573 166218 . - . ID=Phyra71255.4;Parent=Phyra71255;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 166299 166494 . - 0 ID=Phyra71255;Parent=Phyra71255;rank=3 scaffold_10 . exon 166299 166494 . - . ID=Phyra71255.3;Parent=Phyra71255;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_10 . CDS 166558 166615 . - 0 ID=Phyra71255;Parent=Phyra71255;rank=2 scaffold_10 . exon 166558 166615 . - . ID=Phyra71255.2;Parent=Phyra71255;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 166687 166863 . - 0 ID=Phyra71255;Parent=Phyra71255;rank=1 scaffold_10 . exon 166687 166863 . - . ID=Phyra71255.1;Parent=Phyra71255;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 167072 169001 . - . ID=Phyra74830;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000045;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 167072 169001 . - . ID=Phyra74830;Parent=Phyra74830;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 167072 168075 . - 0 ID=Phyra74830;Parent=Phyra74830;rank=3 scaffold_10 . exon 167072 168075 . - . ID=Phyra74830.3;Parent=Phyra74830;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 168277 168302 . - 0 ID=Phyra74830;Parent=Phyra74830;rank=2 scaffold_10 . exon 168277 168302 . - . ID=Phyra74830.2;Parent=Phyra74830;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 168361 169001 . - 0 ID=Phyra74830;Parent=Phyra74830;rank=1 scaffold_10 . exon 168361 169001 . - . ID=Phyra74830.1;Parent=Phyra74830;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . biological_region 171551 171553 0.999 - . logic_name=eponine scaffold_10 . repeat_region 172159 172203 . ? . description=trf scaffold_10 . repeat_region 174242 174335 . ? . description=trf scaffold_10 ensembl protein_coding_gene 169337 172221 . + . ID=Phyra74831;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000046;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 169337 172221 . + . ID=Phyra74831;Parent=Phyra74831;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 169337 169448 . + 0 ID=Phyra74831;Parent=Phyra74831;rank=1 scaffold_10 . exon 169337 169448 . + . ID=Phyra74831.1;Parent=Phyra74831;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 169514 169652 . + 0 ID=Phyra74831;Parent=Phyra74831;rank=2 scaffold_10 . exon 169514 169652 . + . ID=Phyra74831.2;Parent=Phyra74831;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_10 . CDS 169719 172221 . + 0 ID=Phyra74831;Parent=Phyra74831;rank=3 scaffold_10 . exon 169719 172221 . + . ID=Phyra74831.3;Parent=Phyra74831;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 ensembl protein_coding_gene 172592 174235 . + . ID=Phyra74832;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000047;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 172592 174235 . + . ID=Phyra74832;Parent=Phyra74832;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 172592 174235 . + 0 ID=Phyra74832;Parent=Phyra74832;rank=1 scaffold_10 . exon 172592 174235 . + . ID=Phyra74832.1;Parent=Phyra74832;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 174695 176359 . + . ID=Phyra74833;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000048;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 174695 176359 . + . ID=Phyra74833;Parent=Phyra74833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 174695 176359 . + 0 ID=Phyra74833;Parent=Phyra74833;rank=1 scaffold_10 . exon 174695 176359 . + . ID=Phyra74833.1;Parent=Phyra74833;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 177165 178586 . + . ID=Phyra74834;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000049;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 177165 178586 . + . ID=Phyra74834;Parent=Phyra74834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 177165 177727 . + 0 ID=Phyra74834;Parent=Phyra74834;rank=1 scaffold_10 . exon 177165 177727 . + . ID=Phyra74834.1;Parent=Phyra74834;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 177817 178492 . + 0 ID=Phyra74834;Parent=Phyra74834;rank=2 scaffold_10 . exon 177817 178492 . + . ID=Phyra74834.2;Parent=Phyra74834;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 178563 178586 . + 0 ID=Phyra74834;Parent=Phyra74834;rank=3 scaffold_10 . exon 178563 178586 . + . ID=Phyra74834.3;Parent=Phyra74834;constitutive=1;rank=3 scaffold_10 . repeat_region 179291 179612 . ? . description=dust scaffold_10 ensembl protein_coding_gene 180055 180321 . + . ID=Phyra39076;biotype=protein_coding;external_name=gwEuk.10.164.1;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 180055 180321 . + . ID=Phyra39076;Parent=Phyra39076;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 180055 180321 . + 0 ID=Phyra39076;Parent=Phyra39076;rank=1 scaffold_10 . exon 180055 180321 . + . ID=Phyra39076.1;Parent=Phyra39076;constitutive=1;rank=1 scaffold_10 ensembl pseudogene 187930 188378 . - . ID=Phyra39077;biotype=pseudogene;external_name=gwEuk.10.165.1;logic_name=jgi_phyra1 scaffold_10 ensembl pseudogene 187930 188378 . - . ID=Phyra39077;Parent=Phyra39077;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_10 . exon 187930 188378 . - . ID=Phyra39077.1;Parent=Phyra39077;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 182987 183919 . - . ID=Phyra74835;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000050;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 182987 183919 . - . ID=Phyra74835;Parent=Phyra74835;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 182987 183117 . - 0 ID=Phyra74835;Parent=Phyra74835;rank=3 scaffold_10 . exon 182987 183117 . - . ID=Phyra74835.3;Parent=Phyra74835;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 183164 183552 . - 0 ID=Phyra74835;Parent=Phyra74835;rank=2 scaffold_10 . exon 183164 183552 . - . ID=Phyra74835.2;Parent=Phyra74835;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 183603 183919 . - 0 ID=Phyra74835;Parent=Phyra74835;rank=1 scaffold_10 . exon 183603 183919 . - . ID=Phyra74835.1;Parent=Phyra74835;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . biological_region 189581 189583 0.999 + . logic_name=eponine scaffold_10 . repeat_region 190401 190434 . ? . description=trf scaffold_10 . biological_region 190951 190952 0.999 - . logic_name=eponine scaffold_10 . biological_region 192841 192843 0.999 + . logic_name=eponine scaffold_10 . biological_region 192858 192859 0.999 + . logic_name=eponine scaffold_10 . biological_region 192944 192949 0.999 + . logic_name=eponine scaffold_10 . biological_region 192999 193006 0.999 + . logic_name=eponine scaffold_10 . biological_region 193099 193101 0.999 - . logic_name=eponine scaffold_10 . biological_region 197129 197130 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 192817 199834 . + . ID=Phyra74837;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000052;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 192817 199834 . + . ID=Phyra74837;Parent=Phyra74837;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 192817 194340 . + 0 ID=Phyra74837;Parent=Phyra74837;rank=1 scaffold_10 . exon 192817 194340 . + . ID=Phyra74837.1;Parent=Phyra74837;constitutive=1;rank=1 scaffold_10 . CDS 194485 196864 . + 0 ID=Phyra74837;Parent=Phyra74837;rank=2 scaffold_10 . exon 194485 196864 . + . ID=Phyra74837.2;Parent=Phyra74837;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 197027 199125 . + 0 ID=Phyra74837;Parent=Phyra74837;rank=3 scaffold_10 . exon 197027 199125 . + . ID=Phyra74837.3;Parent=Phyra74837;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 199228 199749 . + 0 ID=Phyra74837;Parent=Phyra74837;rank=4 scaffold_10 . CDS 199820 199834 . + 0 ID=Phyra74837;Parent=Phyra74837;rank=5 scaffold_10 . repeat_region 204772 204780 . ? . description=dust scaffold_10 ensembl protein_coding_gene 206811 207835 . - . ID=Phyra71256;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_10000009;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 206811 207835 . - . ID=Phyra71256;Parent=Phyra71256;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 206811 207008 . - 0 ID=Phyra71256;Parent=Phyra71256;rank=4 scaffold_10 . exon 206811 207008 . - . ID=Phyra71256.4;Parent=Phyra71256;constitutive=1;rank=4 scaffold_10 . CDS 207075 207365 . - 0 ID=Phyra71256;Parent=Phyra71256;rank=3 scaffold_10 . exon 207075 207365 . - . ID=Phyra71256.3;Parent=Phyra71256;constitutive=1;rank=3 scaffold_10 . CDS 207465 207704 . - 0 ID=Phyra71256;Parent=Phyra71256;rank=2 scaffold_10 . exon 207465 207704 . - . ID=Phyra71256.2;Parent=Phyra71256;constitutive=1;rank=2 scaffold_10 . CDS 207764 207835 . - 0 ID=Phyra71256;Parent=Phyra71256;rank=1 scaffold_10 . exon 207764 207835 . - . ID=Phyra71256.1;Parent=Phyra71256;constitutive=1;rank=1 scaffold_10 . exon 199228 199749 . + . ID=Phyra74837.4;Parent=Phyra74837;constitutive=1;rank=4 scaffold_10 . exon 199820 199834 . + . ID=Phyra74837.5;Parent=Phyra74837;constitutive=1;rank=5 scaffold_10 ensembl protein_coding_gene 202974 204296 . + . ID=Phyra74838;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000053;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 202974 204296 . + . ID=Phyra74838;Parent=Phyra74838;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 202974 203171 . + 0 ID=Phyra74838;Parent=Phyra74838;rank=1 scaffold_10 . exon 202974 203171 . + . ID=Phyra74838.1;Parent=Phyra74838;constitutive=1;rank=1 scaffold_10 . CDS 203281 203360 . + 0 ID=Phyra74838;Parent=Phyra74838;rank=2 scaffold_10 . exon 203281 203360 . + . ID=Phyra74838.2;Parent=Phyra74838;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 203498 204296 . + 0 ID=Phyra74838;Parent=Phyra74838;rank=3 scaffold_10 . exon 203498 204296 . + . ID=Phyra74838.3;Parent=Phyra74838;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 ensembl protein_coding_gene 205110 206687 . + . ID=Phyra74839;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000054;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 205110 206687 . + . ID=Phyra74839;Parent=Phyra74839;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 205110 206687 . + 0 ID=Phyra74839;Parent=Phyra74839;rank=1 scaffold_10 . exon 205110 206687 . + . ID=Phyra74839.1;Parent=Phyra74839;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 208397 209848 . + . ID=Phyra74841;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000056;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 208397 209848 . + . ID=Phyra74841;Parent=Phyra74841;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 208397 209848 . + 0 ID=Phyra74841;Parent=Phyra74841;rank=1 scaffold_10 . exon 208397 209848 . + . ID=Phyra74841.1;Parent=Phyra74841;constitutive=1;rank=1 scaffold_10 . biological_region 210722 210728 0.999 + . logic_name=eponine scaffold_10 . biological_region 210798 210799 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 209943 211289 . + . ID=Phyra74842;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000057;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 209943 211289 . + . ID=Phyra74842;Parent=Phyra74842;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 209943 210154 . + 0 ID=Phyra74842;Parent=Phyra74842;rank=1 scaffold_10 . exon 209943 210154 . + . ID=Phyra74842.1;Parent=Phyra74842;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 210416 210490 . + 0 ID=Phyra74842;Parent=Phyra74842;rank=2 scaffold_10 . exon 210416 210490 . + . ID=Phyra74842.2;Parent=Phyra74842;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_10 . CDS 210688 211054 . + 0 ID=Phyra74842;Parent=Phyra74842;rank=3 scaffold_10 . exon 210688 211054 . + . ID=Phyra74842.3;Parent=Phyra74842;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 211122 211215 . + 0 ID=Phyra74842;Parent=Phyra74842;rank=4 scaffold_10 . exon 211122 211215 . + . ID=Phyra74842.4;Parent=Phyra74842;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_10 . CDS 211270 211289 . + 0 ID=Phyra74842;Parent=Phyra74842;rank=5 scaffold_10 . exon 211270 211289 . + . ID=Phyra74842.5;Parent=Phyra74842;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 ensembl protein_coding_gene 211905 215330 . - . ID=Phyra74843;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000058;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 211905 215330 . - . ID=Phyra74843;Parent=Phyra74843;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 211905 214999 . - 0 ID=Phyra74843;Parent=Phyra74843;rank=2 scaffold_10 . exon 211905 214999 . - . ID=Phyra74843.2;Parent=Phyra74843;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 215078 215330 . - 0 ID=Phyra74843;Parent=Phyra74843;rank=1 scaffold_10 . exon 215078 215330 . - . ID=Phyra74843.1;Parent=Phyra74843;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 217238 218344 . - . ID=Phyra74844;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000059;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 217238 218344 . - . ID=Phyra74844;Parent=Phyra74844;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 217238 218344 . - 0 ID=Phyra74844;Parent=Phyra74844;rank=1 scaffold_10 . exon 217238 218344 . - . ID=Phyra74844.1;Parent=Phyra74844;constitutive=1;rank=1 scaffold_10 . repeat_region 218794 218802 . ? . description=dust scaffold_10 . repeat_region 219068 219075 . ? . description=dust scaffold_10 ensembl protein_coding_gene 221315 224462 . - . ID=Phyra74845;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000060;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 221315 224462 . - . ID=Phyra74845;Parent=Phyra74845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 221315 221540 . - 0 ID=Phyra74845;Parent=Phyra74845;rank=10 scaffold_10 . exon 221315 221540 . - . ID=Phyra74845.10;Parent=Phyra74845;constitutive=1;ensembl_phase=2;rank=10 scaffold_10 . CDS 221667 221795 . - 0 ID=Phyra74845;Parent=Phyra74845;rank=9 scaffold_10 . exon 221667 221795 . - . ID=Phyra74845.9;Parent=Phyra74845;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_10 . CDS 222002 222048 . - 0 ID=Phyra74845;Parent=Phyra74845;rank=8 scaffold_10 . exon 222002 222048 . - . ID=Phyra74845.8;Parent=Phyra74845;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_10 . CDS 222167 222225 . - 0 ID=Phyra74845;Parent=Phyra74845;rank=7 scaffold_10 . exon 222167 222225 . - . ID=Phyra74845.7;Parent=Phyra74845;constitutive=1;ensembl_phase=1;rank=7 scaffold_10 . CDS 222307 222706 . - 0 ID=Phyra74845;Parent=Phyra74845;rank=6 scaffold_10 . exon 222307 222706 . - . ID=Phyra74845.6;Parent=Phyra74845;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_10 . CDS 222779 223798 . - 0 ID=Phyra74845;Parent=Phyra74845;rank=5 scaffold_10 . exon 222779 223798 . - . ID=Phyra74845.5;Parent=Phyra74845;constitutive=1;rank=5 scaffold_10 . CDS 223879 223970 . - 0 ID=Phyra74845;Parent=Phyra74845;rank=4 scaffold_10 . exon 223879 223970 . - . ID=Phyra74845.4;Parent=Phyra74845;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 224041 224188 . - 0 ID=Phyra74845;Parent=Phyra74845;rank=3 scaffold_10 . exon 224041 224188 . - . ID=Phyra74845.3;Parent=Phyra74845;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 224251 224276 . - 0 ID=Phyra74845;Parent=Phyra74845;rank=2 scaffold_10 . exon 224251 224276 . - . ID=Phyra74845.2;Parent=Phyra74845;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 224342 224462 . - 0 ID=Phyra74845;Parent=Phyra74845;rank=1 scaffold_10 . exon 224342 224462 . - . ID=Phyra74845.1;Parent=Phyra74845;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 225174 226201 . + . ID=Phyra74846;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000061;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 225174 226201 . + . ID=Phyra74846;Parent=Phyra74846;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 225174 225308 . + 0 ID=Phyra74846;Parent=Phyra74846;rank=1 scaffold_10 . exon 225174 225308 . + . ID=Phyra74846.1;Parent=Phyra74846;constitutive=1;rank=1 scaffold_10 . CDS 225381 225473 . + 0 ID=Phyra74846;Parent=Phyra74846;rank=2 scaffold_10 . exon 225381 225473 . + . ID=Phyra74846.2;Parent=Phyra74846;constitutive=1;rank=2 scaffold_10 . CDS 225549 225853 . + 0 ID=Phyra74846;Parent=Phyra74846;rank=3 scaffold_10 . exon 225549 225853 . + . ID=Phyra74846.3;Parent=Phyra74846;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_10 . CDS 225915 226138 . + 0 ID=Phyra74846;Parent=Phyra74846;rank=4 scaffold_10 . exon 225915 226138 . + . ID=Phyra74846.4;Parent=Phyra74846;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 226194 226201 . + 0 ID=Phyra74846;Parent=Phyra74846;rank=5 scaffold_10 . exon 226194 226201 . + . ID=Phyra74846.5;Parent=Phyra74846;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 ensembl protein_coding_gene 226638 228125 . - . ID=Phyra74847;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000062;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 226638 228125 . - . ID=Phyra74847;Parent=Phyra74847;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 226638 228125 . - 0 ID=Phyra74847;Parent=Phyra74847;rank=1 scaffold_10 . exon 226638 228125 . - . ID=Phyra74847.1;Parent=Phyra74847;constitutive=1;rank=1 scaffold_10 . biological_region 228989 228993 0.999 + . logic_name=eponine scaffold_10 . biological_region 229706 229707 0.999 + . logic_name=eponine scaffold_10 . repeat_region 229954 229985 . ? . description=trf scaffold_10 . biological_region 230649 230652 0.999 + . logic_name=eponine scaffold_10 . biological_region 231529 231529 0.999 - . logic_name=eponine scaffold_10 . biological_region 233507 233510 0.999 - . logic_name=eponine scaffold_10 . biological_region 234133 234135 0.999 + . logic_name=eponine scaffold_10 . repeat_region 234315 234393 . ? . description=trf scaffold_10 ensembl protein_coding_gene 230323 231677 . - . ID=Phyra74848;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000063;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 230323 231677 . - . ID=Phyra74848;Parent=Phyra74848;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 230323 231205 . - 0 ID=Phyra74848;Parent=Phyra74848;rank=2 scaffold_10 . exon 230323 231205 . - . ID=Phyra74848.2;Parent=Phyra74848;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 231286 231677 . - 0 ID=Phyra74848;Parent=Phyra74848;rank=1 scaffold_10 . exon 231286 231677 . - . ID=Phyra74848.1;Parent=Phyra74848;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 232110 232562 . + . ID=Phyra74849;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000064;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 232110 232562 . + . ID=Phyra74849;Parent=Phyra74849;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 232110 232562 . + 0 ID=Phyra74849;Parent=Phyra74849;rank=1 scaffold_10 . exon 232110 232562 . + . ID=Phyra74849.1;Parent=Phyra74849;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 232915 234270 . - . ID=Phyra74850;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000065;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 232915 234270 . - . ID=Phyra74850;Parent=Phyra74850;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 232915 233687 . - 0 ID=Phyra74850;Parent=Phyra74850;rank=2 scaffold_10 . exon 232915 233687 . - . ID=Phyra74850.2;Parent=Phyra74850;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 233835 234270 . - 0 ID=Phyra74850;Parent=Phyra74850;rank=1 scaffold_10 . exon 233835 234270 . - . ID=Phyra74850.1;Parent=Phyra74850;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 234416 235705 . - . ID=Phyra74851;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000066;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 234416 235705 . - . ID=Phyra74851;Parent=Phyra74851;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 234416 235705 . - 0 ID=Phyra74851;Parent=Phyra74851;rank=1 scaffold_10 . exon 234416 235705 . - . ID=Phyra74851.1;Parent=Phyra74851;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 236195 237487 . + . ID=Phyra74852;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000067;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 236195 237487 . + . ID=Phyra74852;Parent=Phyra74852;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 236195 237487 . + 0 ID=Phyra74852;Parent=Phyra74852;rank=1 scaffold_10 . exon 236195 237487 . + . ID=Phyra74852.1;Parent=Phyra74852;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 237859 239148 . - . ID=Phyra74853;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000068;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 237859 239148 . - . ID=Phyra74853;Parent=Phyra74853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 237859 239148 . - 0 ID=Phyra74853;Parent=Phyra74853;rank=1 scaffold_10 . exon 237859 239148 . - . ID=Phyra74853.1;Parent=Phyra74853;constitutive=1;rank=1 scaffold_10 . repeat_region 239214 239223 . ? . description=dust scaffold_10 ensembl protein_coding_gene 240611 241942 . - . ID=Phyra71257;biotype=protein_coding;description=Translation elongation factor 1-alpha [Source:UniProtKB/TrEMBL%3BAcc:A7XG37];external_name=EF1A;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 240611 241942 . - . ID=Phyra71257;Parent=Phyra71257;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 240611 241942 . - 0 ID=Phyra71257;Parent=Phyra71257;rank=1 scaffold_10 . exon 240611 241942 . - . ID=Phyra71257.1;Parent=Phyra71257;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 242574 243593 . + . ID=Phyra74855;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000070;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 242574 243593 . + . ID=Phyra74855;Parent=Phyra74855;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 242574 243593 . + 0 ID=Phyra74855;Parent=Phyra74855;rank=1 scaffold_10 . exon 242574 243593 . + . ID=Phyra74855.1;Parent=Phyra74855;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 243726 245310 . - . ID=Phyra74856;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000071;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 243726 245310 . - . ID=Phyra74856;Parent=Phyra74856;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 243726 243885 . - 0 ID=Phyra74856;Parent=Phyra74856;rank=5 scaffold_10 . exon 243726 243885 . - . ID=Phyra74856.5;Parent=Phyra74856;constitutive=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 243963 244120 . - 0 ID=Phyra74856;Parent=Phyra74856;rank=4 scaffold_10 . exon 243963 244120 . - . ID=Phyra74856.4;Parent=Phyra74856;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_10 . CDS 244196 244553 . - 0 ID=Phyra74856;Parent=Phyra74856;rank=3 scaffold_10 . exon 244196 244553 . - . ID=Phyra74856.3;Parent=Phyra74856;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 244621 244662 . - 0 ID=Phyra74856;Parent=Phyra74856;rank=2 scaffold_10 . exon 244621 244662 . - . ID=Phyra74856.2;Parent=Phyra74856;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_10 . CDS 244724 245310 . - 0 ID=Phyra74856;Parent=Phyra74856;rank=1 scaffold_10 . exon 244724 245310 . - . ID=Phyra74856.1;Parent=Phyra74856;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . biological_region 253593 253593 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 252851 255590 . + . ID=Phyra74857;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000072;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 252851 255590 . + . ID=Phyra74857;Parent=Phyra74857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 252851 253039 . + 0 ID=Phyra74857;Parent=Phyra74857;rank=1 scaffold_10 . exon 252851 253039 . + . ID=Phyra74857.1;Parent=Phyra74857;constitutive=1;rank=1 scaffold_10 . CDS 253099 253223 . + 0 ID=Phyra74857;Parent=Phyra74857;rank=2 scaffold_10 . exon 253099 253223 . + . ID=Phyra74857.2;Parent=Phyra74857;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 253287 254748 . + 0 ID=Phyra74857;Parent=Phyra74857;rank=3 scaffold_10 . exon 253287 254748 . + . ID=Phyra74857.3;Parent=Phyra74857;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 254856 254871 . + 0 ID=Phyra74857;Parent=Phyra74857;rank=4 scaffold_10 . exon 254856 254871 . + . ID=Phyra74857.4;Parent=Phyra74857;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_10 . CDS 254967 255024 . + 0 ID=Phyra74857;Parent=Phyra74857;rank=5 scaffold_10 . exon 254967 255024 . + . ID=Phyra74857.5;Parent=Phyra74857;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_10 . CDS 255115 255292 . + 0 ID=Phyra74857;Parent=Phyra74857;rank=6 scaffold_10 . exon 255115 255292 . + . ID=Phyra74857.6;Parent=Phyra74857;constitutive=1;ensembl_phase=2;rank=6 scaffold_10 . CDS 255380 255484 . + 0 ID=Phyra74857;Parent=Phyra74857;rank=7 scaffold_10 . exon 255380 255484 . + . ID=Phyra74857.7;Parent=Phyra74857;constitutive=1;rank=7 scaffold_10 . CDS 255552 255590 . + 0 ID=Phyra74857;Parent=Phyra74857;rank=8 scaffold_10 . exon 255552 255590 . + . ID=Phyra74857.8;Parent=Phyra74857;constitutive=1;rank=8 scaffold_10 ensembl protein_coding_gene 259321 261747 . + . ID=Phyra74858;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000073;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 259321 261747 . + . ID=Phyra74858;Parent=Phyra74858;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 259321 261747 . + 0 ID=Phyra74858;Parent=Phyra74858;rank=1 scaffold_10 . exon 259321 261747 . + . ID=Phyra74858.1;Parent=Phyra74858;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 262604 265138 . + . ID=Phyra74859;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000074;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 262604 265138 . + . ID=Phyra74859;Parent=Phyra74859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 262604 265138 . + 0 ID=Phyra74859;Parent=Phyra74859;rank=1 scaffold_10 . exon 262604 265138 . + . ID=Phyra74859.1;Parent=Phyra74859;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 266541 267836 . + . ID=Phyra74860;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000075;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 266541 267836 . + . ID=Phyra74860;Parent=Phyra74860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 266541 267836 . + 0 ID=Phyra74860;Parent=Phyra74860;rank=1 scaffold_10 . exon 266541 267836 . + . ID=Phyra74860.1;Parent=Phyra74860;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 268203 269074 . - . ID=Phyra74861;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000076;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 268203 269074 . - . ID=Phyra74861;Parent=Phyra74861;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 268203 268220 . - 0 ID=Phyra74861;Parent=Phyra74861;rank=2 scaffold_10 . exon 268203 268220 . - . ID=Phyra74861.2;Parent=Phyra74861;constitutive=1;rank=2 scaffold_10 . CDS 268259 269074 . - 0 ID=Phyra74861;Parent=Phyra74861;rank=1 scaffold_10 . exon 268259 269074 . - . ID=Phyra74861.1;Parent=Phyra74861;constitutive=1;rank=1 scaffold_10 . biological_region 268716 268722 0.999 - . logic_name=eponine scaffold_10 . biological_region 268763 268765 0.999 - . logic_name=eponine scaffold_10 . biological_region 268798 268801 0.999 - . logic_name=eponine scaffold_10 . biological_region 268884 268887 0.999 + . logic_name=eponine scaffold_10 . biological_region 274278 274279 0.999 + . logic_name=eponine scaffold_10 . biological_region 274303 274307 0.999 + . logic_name=eponine scaffold_10 . biological_region 274420 274423 0.999 - . logic_name=eponine scaffold_10 . biological_region 274495 274499 0.999 - . logic_name=eponine scaffold_10 . biological_region 275006 275007 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 269531 270217 . + . ID=Phyra74862;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000077;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 269531 270217 . + . ID=Phyra74862;Parent=Phyra74862;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 269531 269608 . + 0 ID=Phyra74862;Parent=Phyra74862;rank=1 scaffold_10 . exon 269531 269608 . + . ID=Phyra74862.1;Parent=Phyra74862;constitutive=1;rank=1 scaffold_10 . CDS 269674 269810 . + 0 ID=Phyra74862;Parent=Phyra74862;rank=2 scaffold_10 . exon 269674 269810 . + . ID=Phyra74862.2;Parent=Phyra74862;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 269878 270010 . + 0 ID=Phyra74862;Parent=Phyra74862;rank=3 scaffold_10 . exon 269878 270010 . + . ID=Phyra74862.3;Parent=Phyra74862;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 270083 270217 . + 0 ID=Phyra74862;Parent=Phyra74862;rank=4 scaffold_10 . exon 270083 270217 . + . ID=Phyra74862.4;Parent=Phyra74862;constitutive=1;rank=4 scaffold_10 ensembl protein_coding_gene 270711 271862 . - . ID=Phyra74863;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000078;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 270711 271862 . - . ID=Phyra74863;Parent=Phyra74863;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 270711 270965 . - 0 ID=Phyra74863;Parent=Phyra74863;rank=2 scaffold_10 . exon 270711 270965 . - . ID=Phyra74863.2;Parent=Phyra74863;constitutive=1;rank=2 scaffold_10 . CDS 270996 271862 . - 0 ID=Phyra74863;Parent=Phyra74863;rank=1 scaffold_10 . exon 270996 271862 . - . ID=Phyra74863.1;Parent=Phyra74863;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 272062 273333 . - . ID=Phyra74864;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000079;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 272062 273333 . - . ID=Phyra74864;Parent=Phyra74864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 272062 273333 . - 0 ID=Phyra74864;Parent=Phyra74864;rank=1 scaffold_10 . exon 272062 273333 . - . ID=Phyra74864.1;Parent=Phyra74864;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 274224 275366 . + . ID=Phyra74865;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000080;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 274224 275366 . + . ID=Phyra74865;Parent=Phyra74865;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 274224 275366 . + 0 ID=Phyra74865;Parent=Phyra74865;rank=1 scaffold_10 . exon 274224 275366 . + . ID=Phyra74865.1;Parent=Phyra74865;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 277874 279851 . + . ID=Phyra74866;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000081;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 277874 279851 . + . ID=Phyra74866;Parent=Phyra74866;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 277874 278165 . + 0 ID=Phyra74866;Parent=Phyra74866;rank=1 scaffold_10 . exon 277874 278165 . + . ID=Phyra74866.1;Parent=Phyra74866;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 278295 278578 . + 0 ID=Phyra74866;Parent=Phyra74866;rank=2 scaffold_10 . exon 278295 278578 . + . ID=Phyra74866.2;Parent=Phyra74866;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 278610 278712 . + 0 ID=Phyra74866;Parent=Phyra74866;rank=3 scaffold_10 . CDS 278745 278846 . + 0 ID=Phyra74866;Parent=Phyra74866;rank=4 scaffold_10 . CDS 278898 279416 . + 0 ID=Phyra74866;Parent=Phyra74866;rank=5 scaffold_10 . CDS 279494 279649 . + 0 ID=Phyra74866;Parent=Phyra74866;rank=6 scaffold_10 . CDS 279730 279851 . + 0 ID=Phyra74866;Parent=Phyra74866;rank=7 scaffold_10 . repeat_region 281139 281146 . ? . description=dust scaffold_10 . repeat_region 281910 281921 . ? . description=dust scaffold_10 . repeat_region 282218 282225 . ? . description=dust scaffold_10 . repeat_region 284108 284240 . ? . description=trf scaffold_10 . repeat_region 284257 284271 . ? . description=dust scaffold_10 . repeat_region 284394 284453 . ? . description=trf scaffold_10 . repeat_region 284616 284632 . ? . description=dust scaffold_10 . exon 278610 278712 . + . ID=Phyra74866.3;Parent=Phyra74866;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . exon 278745 278846 . + . ID=Phyra74866.4;Parent=Phyra74866;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_10 . exon 278898 279416 . + . ID=Phyra74866.5;Parent=Phyra74866;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_10 . exon 279494 279649 . + . ID=Phyra74866.6;Parent=Phyra74866;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_10 . exon 279730 279851 . + . ID=Phyra74866.7;Parent=Phyra74866;constitutive=1;ensembl_phase=1;rank=7 scaffold_10 ensembl protein_coding_gene 282629 283735 . + . ID=Phyra74867;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000082;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 282629 283735 . + . ID=Phyra74867;Parent=Phyra74867;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 282629 283735 . + 0 ID=Phyra74867;Parent=Phyra74867;rank=1 scaffold_10 . exon 282629 283735 . + . ID=Phyra74867.1;Parent=Phyra74867;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 285761 288727 . + . ID=Phyra74868;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000083;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 285761 288727 . + . ID=Phyra74868;Parent=Phyra74868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 285761 288727 . + 0 ID=Phyra74868;Parent=Phyra74868;rank=1 scaffold_10 . exon 285761 288727 . + . ID=Phyra74868.1;Parent=Phyra74868;constitutive=1;rank=1 scaffold_10 . biological_region 290160 290161 0.999 - . logic_name=eponine scaffold_10 . biological_region 293450 293453 0.999 + . logic_name=eponine scaffold_10 . biological_region 293570 293575 0.999 - . logic_name=eponine scaffold_10 . biological_region 293635 293639 0.999 - . logic_name=eponine scaffold_10 . biological_region 293708 293710 0.999 - . logic_name=eponine scaffold_10 . biological_region 295393 295394 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 293521 295311 . + . ID=Phyra38945;biotype=protein_coding;external_name=gwEuk.10.33.1;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 293521 295311 . + . ID=Phyra38945;Parent=Phyra38945;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 293521 295311 . + 0 ID=Phyra38945;Parent=Phyra38945;rank=1 scaffold_10 . exon 293521 295311 . + . ID=Phyra38945.1;Parent=Phyra38945;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 289018 290325 . - . ID=Phyra74869;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000084;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 289018 290325 . - . ID=Phyra74869;Parent=Phyra74869;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 289018 290325 . - 0 ID=Phyra74869;Parent=Phyra74869;rank=1 scaffold_10 . exon 289018 290325 . - . ID=Phyra74869.1;Parent=Phyra74869;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 291421 292160 . - . ID=Phyra74870;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000085;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 291421 292160 . - . ID=Phyra74870;Parent=Phyra74870;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 291421 292006 . - 0 ID=Phyra74870;Parent=Phyra74870;rank=2 scaffold_10 . exon 291421 292006 . - . ID=Phyra74870.2;Parent=Phyra74870;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 292132 292160 . - 0 ID=Phyra74870;Parent=Phyra74870;rank=1 scaffold_10 . exon 292132 292160 . - . ID=Phyra74870.1;Parent=Phyra74870;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 295685 300630 . - . ID=Phyra74872;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000087;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 295685 300630 . - . ID=Phyra74872;Parent=Phyra74872;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 295685 296023 . - 0 ID=Phyra74872;Parent=Phyra74872;rank=6 scaffold_10 . exon 295685 296023 . - . ID=Phyra74872.6;Parent=Phyra74872;constitutive=1;rank=6 scaffold_10 . CDS 296098 296481 . - 0 ID=Phyra74872;Parent=Phyra74872;rank=5 scaffold_10 . exon 296098 296481 . - . ID=Phyra74872.5;Parent=Phyra74872;constitutive=1;rank=5 scaffold_10 . CDS 296647 297351 . - 0 ID=Phyra74872;Parent=Phyra74872;rank=4 scaffold_10 . exon 296647 297351 . - . ID=Phyra74872.4;Parent=Phyra74872;constitutive=1;rank=4 scaffold_10 . CDS 297430 297469 . - 0 ID=Phyra74872;Parent=Phyra74872;rank=3 scaffold_10 . exon 297430 297469 . - . ID=Phyra74872.3;Parent=Phyra74872;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 297541 297983 . - 0 ID=Phyra74872;Parent=Phyra74872;rank=2 scaffold_10 . exon 297541 297983 . - . ID=Phyra74872.2;Parent=Phyra74872;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 298438 300630 . - 0 ID=Phyra74872;Parent=Phyra74872;rank=1 scaffold_10 . repeat_region 298371 298379 . ? . description=dust scaffold_10 ensembl protein_coding_gene 303874 306244 . - . ID=Phyra38947;biotype=protein_coding;external_name=gwEuk.10.35.1;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 303874 306244 . - . ID=Phyra38947;Parent=Phyra38947;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 303874 304578 . - 0 ID=Phyra38947;Parent=Phyra38947;rank=4 scaffold_10 . exon 303874 304578 . - . ID=Phyra38947.4;Parent=Phyra38947;constitutive=1;rank=4 scaffold_10 . CDS 304650 305302 . - 0 ID=Phyra38947;Parent=Phyra38947;rank=3 scaffold_10 . exon 304650 305302 . - . ID=Phyra38947.3;Parent=Phyra38947;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 305391 306102 . - 0 ID=Phyra38947;Parent=Phyra38947;rank=2 scaffold_10 . exon 305391 306102 . - . ID=Phyra38947.2;Parent=Phyra38947;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 306164 306244 . - 0 ID=Phyra38947;Parent=Phyra38947;rank=1 scaffold_10 . exon 306164 306244 . - . ID=Phyra38947.1;Parent=Phyra38947;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 307297 308738 . - . ID=Phyra38953;biotype=protein_coding;external_name=gwEuk.10.41.1;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 307297 308738 . - . ID=Phyra38953;Parent=Phyra38953;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 307297 307487 . - 0 ID=Phyra38953;Parent=Phyra38953;rank=5 scaffold_10 . exon 307297 307487 . - . ID=Phyra38953.5;Parent=Phyra38953;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 . CDS 307552 307808 . - 0 ID=Phyra38953;Parent=Phyra38953;rank=4 scaffold_10 . exon 307552 307808 . - . ID=Phyra38953.4;Parent=Phyra38953;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 307885 308053 . - 0 ID=Phyra38953;Parent=Phyra38953;rank=3 scaffold_10 . exon 307885 308053 . - . ID=Phyra38953.3;Parent=Phyra38953;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_10 . CDS 308148 308226 . - 0 ID=Phyra38953;Parent=Phyra38953;rank=2 scaffold_10 . exon 308148 308226 . - . ID=Phyra38953.2;Parent=Phyra38953;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 308439 308738 . - 0 ID=Phyra38953;Parent=Phyra38953;rank=1 scaffold_10 . exon 298438 300630 . - . ID=Phyra74872.1;Parent=Phyra74872;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 302188 303279 . + . ID=Phyra74873;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000088;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 302188 303279 . + . ID=Phyra74873;Parent=Phyra74873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 302188 303279 . + 0 ID=Phyra74873;Parent=Phyra74873;rank=1 scaffold_10 . exon 302188 303279 . + . ID=Phyra74873.1;Parent=Phyra74873;constitutive=1;rank=1 scaffold_10 . biological_region 311926 311928 0.999 + . logic_name=eponine scaffold_10 . biological_region 312107 312111 0.999 - . logic_name=eponine scaffold_10 . biological_region 312211 312212 0.999 + . logic_name=eponine scaffold_10 . exon 308439 308738 . - . ID=Phyra38953.1;Parent=Phyra38953;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 309573 309947 . - . ID=Phyra74876;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000091;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 309573 309947 . - . ID=Phyra74876;Parent=Phyra74876;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 309573 309947 . - 0 ID=Phyra74876;Parent=Phyra74876;rank=1 scaffold_10 . exon 309573 309947 . - . ID=Phyra74876.1;Parent=Phyra74876;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 310158 311018 . - . ID=Phyra74877;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000092;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 310158 311018 . - . ID=Phyra74877;Parent=Phyra74877;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 310158 310553 . - 0 ID=Phyra74877;Parent=Phyra74877;rank=2 scaffold_10 . exon 310158 310553 . - . ID=Phyra74877.2;Parent=Phyra74877;constitutive=1;rank=2 scaffold_10 . CDS 310656 311018 . - 0 ID=Phyra74877;Parent=Phyra74877;rank=1 scaffold_10 . exon 310656 311018 . - . ID=Phyra74877.1;Parent=Phyra74877;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 311914 319497 . + . ID=Phyra74878;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000093;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 311914 319497 . + . ID=Phyra74878;Parent=Phyra74878;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 311914 312698 . + 0 ID=Phyra74878;Parent=Phyra74878;rank=1 scaffold_10 . exon 311914 312698 . + . ID=Phyra74878.1;Parent=Phyra74878;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 312785 312945 . + 0 ID=Phyra74878;Parent=Phyra74878;rank=2 scaffold_10 . exon 312785 312945 . + . ID=Phyra74878.2;Parent=Phyra74878;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 313015 319381 . + 0 ID=Phyra74878;Parent=Phyra74878;rank=3 scaffold_10 . exon 313015 319381 . + . ID=Phyra74878.3;Parent=Phyra74878;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_10 . CDS 319449 319497 . + 0 ID=Phyra74878;Parent=Phyra74878;rank=4 scaffold_10 . repeat_region 326041 326098 . ? . description=trf scaffold_10 . exon 319449 319497 . + . ID=Phyra74878.4;Parent=Phyra74878;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 ensembl protein_coding_gene 321584 322363 . - . ID=Phyra74879;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000094;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 321584 322363 . - . ID=Phyra74879;Parent=Phyra74879;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 321584 322363 . - 0 ID=Phyra74879;Parent=Phyra74879;rank=1 scaffold_10 . exon 321584 322363 . - . ID=Phyra74879.1;Parent=Phyra74879;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 322622 323692 . + . ID=Phyra74880;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000095;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 322622 323692 . + . ID=Phyra74880;Parent=Phyra74880;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 322622 323692 . + 0 ID=Phyra74880;Parent=Phyra74880;rank=1 scaffold_10 . exon 322622 323692 . + . ID=Phyra74880.1;Parent=Phyra74880;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 323767 326217 . - . ID=Phyra74881;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000096;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 323767 326217 . - . ID=Phyra74881;Parent=Phyra74881;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 323767 326145 . - 0 ID=Phyra74881;Parent=Phyra74881;rank=2 scaffold_10 . exon 323767 326145 . - . ID=Phyra74881.2;Parent=Phyra74881;constitutive=1;rank=2 scaffold_10 . CDS 326215 326217 . - 0 ID=Phyra74881;Parent=Phyra74881;rank=1 scaffold_10 . exon 326215 326217 . - . ID=Phyra74881.1;Parent=Phyra74881;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 327645 329363 . + . ID=Phyra74882;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000097;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 327645 329363 . + . ID=Phyra74882;Parent=Phyra74882;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 327645 329363 . + 0 ID=Phyra74882;Parent=Phyra74882;rank=1 scaffold_10 . exon 327645 329363 . + . ID=Phyra74882.1;Parent=Phyra74882;constitutive=1;rank=1 scaffold_10 . biological_region 333389 333390 0.999 - . logic_name=eponine scaffold_10 . repeat_region 336276 336285 . ? . description=dust scaffold_10 . repeat_region 337404 337453 . ? . description=dust scaffold_10 ensembl protein_coding_gene 331793 335135 . - . ID=Phyra93942;biotype=protein_coding;external_name=C_scaffold_10000023;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 331793 335135 . - . ID=Phyra93942;Parent=Phyra93942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 331793 331798 . - 0 ID=Phyra93942;Parent=Phyra93942;rank=8 scaffold_10 . exon 331793 331798 . - . ID=Phyra93942.8;Parent=Phyra93942;constitutive=1;rank=8 scaffold_10 . CDS 331836 332409 . - 0 ID=Phyra93942;Parent=Phyra93942;rank=7 scaffold_10 . exon 331836 332409 . - . ID=Phyra93942.7;Parent=Phyra93942;constitutive=1;ensembl_phase=2;rank=7 scaffold_10 . CDS 332461 332607 . - 0 ID=Phyra93942;Parent=Phyra93942;rank=6 scaffold_10 . exon 332461 332607 . - . ID=Phyra93942.6;Parent=Phyra93942;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_10 . CDS 332671 333050 . - 0 ID=Phyra93942;Parent=Phyra93942;rank=5 scaffold_10 . exon 332671 333050 . - . ID=Phyra93942.5;Parent=Phyra93942;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_10 . CDS 333114 333792 . - 0 ID=Phyra93942;Parent=Phyra93942;rank=4 scaffold_10 . exon 333114 333792 . - . ID=Phyra93942.4;Parent=Phyra93942;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 333964 334524 . - 0 ID=Phyra93942;Parent=Phyra93942;rank=3 scaffold_10 . exon 333964 334524 . - . ID=Phyra93942.3;Parent=Phyra93942;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_10 . CDS 334594 334838 . - 0 ID=Phyra93942;Parent=Phyra93942;rank=2 scaffold_10 . exon 334594 334838 . - . ID=Phyra93942.2;Parent=Phyra93942;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 334866 335135 . - 0 ID=Phyra93942;Parent=Phyra93942;rank=1 scaffold_10 . exon 334866 335135 . - . ID=Phyra93942.1;Parent=Phyra93942;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 346656 347381 . + . ID=Phyra74884;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000099;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 346656 347381 . + . ID=Phyra74884;Parent=Phyra74884;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 346656 347381 . + 0 ID=Phyra74884;Parent=Phyra74884;rank=1 scaffold_10 . exon 346656 347381 . + . ID=Phyra74884.1;Parent=Phyra74884;constitutive=1;rank=1 scaffold_10 . repeat_region 349100 349146 . ? . description=trf scaffold_10 . repeat_region 350972 350980 . ? . description=dust scaffold_10 ensembl protein_coding_gene 348121 348558 . - . ID=Phyra74885;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000100;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 348121 348558 . - . ID=Phyra74885;Parent=Phyra74885;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 348121 348558 . - 0 ID=Phyra74885;Parent=Phyra74885;rank=1 scaffold_10 . exon 348121 348558 . - . ID=Phyra74885.1;Parent=Phyra74885;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 354248 355393 . + . ID=Phyra74887;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000102;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 354248 355393 . + . ID=Phyra74887;Parent=Phyra74887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 354248 355393 . + 0 ID=Phyra74887;Parent=Phyra74887;rank=1 scaffold_10 . exon 354248 355393 . + . ID=Phyra74887.1;Parent=Phyra74887;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 355495 356985 . - . ID=Phyra74888;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000103;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 355495 356985 . - . ID=Phyra74888;Parent=Phyra74888;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 355495 356985 . - 0 ID=Phyra74888;Parent=Phyra74888;rank=1 scaffold_10 . exon 355495 356985 . - . ID=Phyra74888.1;Parent=Phyra74888;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 357289 358905 . + . ID=Phyra74889;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000104;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 357289 358905 . + . ID=Phyra74889;Parent=Phyra74889;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 357289 358905 . + 0 ID=Phyra74889;Parent=Phyra74889;rank=1 scaffold_10 . exon 357289 358905 . + . ID=Phyra74889.1;Parent=Phyra74889;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 351475 352637 . - . ID=Phyra93943;biotype=protein_coding;external_name=C_scaffold_10000024;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 351475 352637 . - . ID=Phyra93943;Parent=Phyra93943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 351475 352016 . - 0 ID=Phyra93943;Parent=Phyra93943;rank=4 scaffold_10 . exon 351475 352016 . - . ID=Phyra93943.4;Parent=Phyra93943;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 352065 352347 . - 0 ID=Phyra93943;Parent=Phyra93943;rank=3 scaffold_10 . exon 352065 352347 . - . ID=Phyra93943.3;Parent=Phyra93943;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 352375 352586 . - 0 ID=Phyra93943;Parent=Phyra93943;rank=2 scaffold_10 . exon 352375 352586 . - . ID=Phyra93943.2;Parent=Phyra93943;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 352628 352637 . - 0 ID=Phyra93943;Parent=Phyra93943;rank=1 scaffold_10 . exon 352628 352637 . - . ID=Phyra93943.1;Parent=Phyra93943;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . biological_region 360837 360845 0.999 + . logic_name=eponine scaffold_10 . biological_region 360866 360867 0.999 - . logic_name=eponine scaffold_10 . biological_region 360869 360875 0.999 + . logic_name=eponine scaffold_10 . biological_region 360976 360976 0.999 + . logic_name=eponine scaffold_10 . biological_region 361705 361711 0.999 - . logic_name=eponine scaffold_10 . biological_region 363499 363502 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 359117 360973 . - . ID=Phyra74890;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000105;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 359117 360973 . - . ID=Phyra74890;Parent=Phyra74890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 359117 360973 . - 0 ID=Phyra74890;Parent=Phyra74890;rank=1 scaffold_10 . exon 359117 360973 . - . ID=Phyra74890.1;Parent=Phyra74890;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 366707 367680 . + . ID=Phyra74891;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000106;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 366707 367680 . + . ID=Phyra74891;Parent=Phyra74891;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 366707 367468 . + 0 ID=Phyra74891;Parent=Phyra74891;rank=1 scaffold_10 . exon 366707 367468 . + . ID=Phyra74891.1;Parent=Phyra74891;constitutive=1;rank=1 scaffold_10 . CDS 367505 367582 . + 0 ID=Phyra74891;Parent=Phyra74891;rank=2 scaffold_10 . exon 367505 367582 . + . ID=Phyra74891.2;Parent=Phyra74891;constitutive=1;rank=2 scaffold_10 . CDS 367627 367680 . + 0 ID=Phyra74891;Parent=Phyra74891;rank=3 scaffold_10 . exon 367627 367680 . + . ID=Phyra74891.3;Parent=Phyra74891;constitutive=1;rank=3 scaffold_10 . repeat_region 373448 373467 . ? . description=trf scaffold_10 ensembl protein_coding_gene 368133 369707 . - . ID=Phyra74892;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000107;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 368133 369707 . - . ID=Phyra74892;Parent=Phyra74892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 368133 369707 . - 0 ID=Phyra74892;Parent=Phyra74892;rank=1 scaffold_10 . exon 368133 369707 . - . ID=Phyra74892.1;Parent=Phyra74892;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 370572 371828 . + . ID=Phyra74893;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000108;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 370572 371828 . + . ID=Phyra74893;Parent=Phyra74893;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 370572 371828 . + 0 ID=Phyra74893;Parent=Phyra74893;rank=1 scaffold_10 . exon 370572 371828 . + . ID=Phyra74893.1;Parent=Phyra74893;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 373955 378699 . + . ID=Phyra74894;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000109;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 373955 378699 . + . ID=Phyra74894;Parent=Phyra74894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 373955 376323 . + 0 ID=Phyra74894;Parent=Phyra74894;rank=1 scaffold_10 . exon 373955 376323 . + . ID=Phyra74894.1;Parent=Phyra74894;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 376428 378324 . + 0 ID=Phyra74894;Parent=Phyra74894;rank=2 scaffold_10 . exon 376428 378324 . + . ID=Phyra74894.2;Parent=Phyra74894;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 378392 378648 . + 0 ID=Phyra74894;Parent=Phyra74894;rank=3 scaffold_10 . CDS 378672 378699 . + 0 ID=Phyra74894;Parent=Phyra74894;rank=4 scaffold_10 . biological_region 378531 378533 0.999 - . logic_name=eponine scaffold_10 . repeat_region 379499 379509 . ? . description=dust scaffold_10 . biological_region 380909 380910 0.999 - . logic_name=eponine scaffold_10 . biological_region 380966 380966 0.999 + . logic_name=eponine scaffold_10 . exon 378392 378648 . + . ID=Phyra74894.3;Parent=Phyra74894;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_10 . exon 378672 378699 . + . ID=Phyra74894.4;Parent=Phyra74894;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 ensembl protein_coding_gene 379019 379450 . - . ID=Phyra74895;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000110;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 379019 379450 . - . ID=Phyra74895;Parent=Phyra74895;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 379019 379450 . - 0 ID=Phyra74895;Parent=Phyra74895;rank=1 scaffold_10 . exon 379019 379450 . - . ID=Phyra74895.1;Parent=Phyra74895;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 379787 381718 . - . ID=Phyra74896;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000111;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 379787 381718 . - . ID=Phyra74896;Parent=Phyra74896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 379787 381718 . - 0 ID=Phyra74896;Parent=Phyra74896;rank=1 scaffold_10 . exon 379787 381718 . - . ID=Phyra74896.1;Parent=Phyra74896;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 382262 383858 . + . ID=Phyra74897;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000112;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 382262 383858 . + . ID=Phyra74897;Parent=Phyra74897;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 382262 383663 . + 0 ID=Phyra74897;Parent=Phyra74897;rank=1 scaffold_10 . exon 382262 383663 . + . ID=Phyra74897.1;Parent=Phyra74897;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 383791 383858 . + 0 ID=Phyra74897;Parent=Phyra74897;rank=2 scaffold_10 . exon 383791 383858 . + . ID=Phyra74897.2;Parent=Phyra74897;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 ensembl protein_coding_gene 386824 388999 . - . ID=Phyra74898;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000113;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 386824 388999 . - . ID=Phyra74898;Parent=Phyra74898;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 386824 386880 . - 0 ID=Phyra74898;Parent=Phyra74898;rank=3 scaffold_10 . exon 386824 386880 . - . ID=Phyra74898.3;Parent=Phyra74898;constitutive=1;rank=3 scaffold_10 . CDS 387050 388474 . - 0 ID=Phyra74898;Parent=Phyra74898;rank=2 scaffold_10 . exon 387050 388474 . - . ID=Phyra74898.2;Parent=Phyra74898;constitutive=1;rank=2 scaffold_10 . CDS 388538 388999 . - 0 ID=Phyra74898;Parent=Phyra74898;rank=1 scaffold_10 . repeat_region 388998 389073 . ? . description=trf scaffold_10 . exon 388538 388999 . - . ID=Phyra74898.1;Parent=Phyra74898;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 389158 391638 . + . ID=Phyra74899;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000114;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 389158 391638 . + . ID=Phyra74899;Parent=Phyra74899;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 389158 389265 . + 0 ID=Phyra74899;Parent=Phyra74899;rank=1 scaffold_10 . exon 389158 389265 . + . ID=Phyra74899.1;Parent=Phyra74899;constitutive=1;rank=1 scaffold_10 . CDS 389341 389417 . + 0 ID=Phyra74899;Parent=Phyra74899;rank=2 scaffold_10 . exon 389341 389417 . + . ID=Phyra74899.2;Parent=Phyra74899;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 389482 389576 . + 0 ID=Phyra74899;Parent=Phyra74899;rank=3 scaffold_10 . exon 389482 389576 . + . ID=Phyra74899.3;Parent=Phyra74899;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 389639 391638 . + 0 ID=Phyra74899;Parent=Phyra74899;rank=4 scaffold_10 . exon 389639 391638 . + . ID=Phyra74899.4;Parent=Phyra74899;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 ensembl protein_coding_gene 394657 397320 . + . ID=Phyra74901;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000116;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 394657 397320 . + . ID=Phyra74901;Parent=Phyra74901;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 394657 397320 . + 0 ID=Phyra74901;Parent=Phyra74901;rank=1 scaffold_10 . exon 394657 397320 . + . ID=Phyra74901.1;Parent=Phyra74901;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 392825 393512 . + . ID=Phyra93949;biotype=protein_coding;external_name=C_scaffold_10000030;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 392825 393512 . + . ID=Phyra93949;Parent=Phyra93949;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 392825 393277 . + 0 ID=Phyra93949;Parent=Phyra93949;rank=1 scaffold_10 . exon 392825 393277 . + . ID=Phyra93949.1;Parent=Phyra93949;constitutive=1;rank=1 scaffold_10 . CDS 393435 393512 . + 0 ID=Phyra93949;Parent=Phyra93949;rank=2 scaffold_10 . exon 393435 393512 . + . ID=Phyra93949.2;Parent=Phyra93949;constitutive=1;rank=2 scaffold_10 . biological_region 399059 399059 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 398305 400557 . - . ID=Phyra74902;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000117;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 398305 400557 . - . ID=Phyra74902;Parent=Phyra74902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 398305 399577 . - 0 ID=Phyra74902;Parent=Phyra74902;rank=6 scaffold_10 . exon 398305 399577 . - . ID=Phyra74902.6;Parent=Phyra74902;constitutive=1;ensembl_phase=2;rank=6 scaffold_10 . CDS 399731 399805 . - 0 ID=Phyra74902;Parent=Phyra74902;rank=5 scaffold_10 . exon 399731 399805 . - . ID=Phyra74902.5;Parent=Phyra74902;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_10 . CDS 399879 399944 . - 0 ID=Phyra74902;Parent=Phyra74902;rank=4 scaffold_10 . exon 399879 399944 . - . ID=Phyra74902.4;Parent=Phyra74902;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_10 . CDS 400024 400092 . - 0 ID=Phyra74902;Parent=Phyra74902;rank=3 scaffold_10 . exon 400024 400092 . - . ID=Phyra74902.3;Parent=Phyra74902;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_10 . CDS 400162 400245 . - 0 ID=Phyra74902;Parent=Phyra74902;rank=2 scaffold_10 . exon 400162 400245 . - . ID=Phyra74902.2;Parent=Phyra74902;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_10 . CDS 400307 400557 . - 0 ID=Phyra74902;Parent=Phyra74902;rank=1 scaffold_10 . exon 400307 400557 . - . ID=Phyra74902.1;Parent=Phyra74902;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 401139 402067 . + . ID=Phyra74903;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000118;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 401139 402067 . + . ID=Phyra74903;Parent=Phyra74903;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 401139 401150 . + 0 ID=Phyra74903;Parent=Phyra74903;rank=1 scaffold_10 . exon 401139 401150 . + . ID=Phyra74903.1;Parent=Phyra74903;constitutive=1;rank=1 scaffold_10 . CDS 401243 401296 . + 0 ID=Phyra74903;Parent=Phyra74903;rank=2 scaffold_10 . exon 401243 401296 . + . ID=Phyra74903.2;Parent=Phyra74903;constitutive=1;rank=2 scaffold_10 . CDS 401319 401324 . + 0 ID=Phyra74903;Parent=Phyra74903;rank=3 scaffold_10 . exon 401319 401324 . + . ID=Phyra74903.3;Parent=Phyra74903;constitutive=1;rank=3 scaffold_10 . CDS 401379 401440 . + 0 ID=Phyra74903;Parent=Phyra74903;rank=4 scaffold_10 . exon 401379 401440 . + . ID=Phyra74903.4;Parent=Phyra74903;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_10 . CDS 401506 402067 . + 0 ID=Phyra74903;Parent=Phyra74903;rank=5 scaffold_10 . exon 401506 402067 . + . ID=Phyra74903.5;Parent=Phyra74903;constitutive=1;ensembl_phase=2;rank=5 scaffold_10 ensembl protein_coding_gene 405936 407068 . - . ID=Phyra74904;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000119;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 405936 407068 . - . ID=Phyra74904;Parent=Phyra74904;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 405936 406670 . - 0 ID=Phyra74904;Parent=Phyra74904;rank=3 scaffold_10 . exon 405936 406670 . - . ID=Phyra74904.3;Parent=Phyra74904;constitutive=1;rank=3 scaffold_10 . CDS 406740 406946 . - 0 ID=Phyra74904;Parent=Phyra74904;rank=2 scaffold_10 . exon 406740 406946 . - . ID=Phyra74904.2;Parent=Phyra74904;constitutive=1;rank=2 scaffold_10 . CDS 407012 407068 . - 0 ID=Phyra74904;Parent=Phyra74904;rank=1 scaffold_10 . exon 407012 407068 . - . ID=Phyra74904.1;Parent=Phyra74904;constitutive=1;rank=1 scaffold_10 . repeat_region 408207 408239 . ? . description=trf scaffold_10 . repeat_region 412676 412694 . ? . description=dust scaffold_10 . repeat_region 416972 416982 . ? . description=dust scaffold_10 ensembl protein_coding_gene 408044 412416 . - . ID=Phyra74905;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000120;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 408044 412416 . - . ID=Phyra74905;Parent=Phyra74905;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 408044 408310 . - 0 ID=Phyra74905;Parent=Phyra74905;rank=4 scaffold_10 . exon 408044 408310 . - . ID=Phyra74905.4;Parent=Phyra74905;constitutive=1;rank=4 scaffold_10 . CDS 408388 411636 . - 0 ID=Phyra74905;Parent=Phyra74905;rank=3 scaffold_10 . exon 408388 411636 . - . ID=Phyra74905.3;Parent=Phyra74905;constitutive=1;rank=3 scaffold_10 . CDS 411708 411770 . - 0 ID=Phyra74905;Parent=Phyra74905;rank=2 scaffold_10 . exon 411708 411770 . - . ID=Phyra74905.2;Parent=Phyra74905;constitutive=1;rank=2 scaffold_10 . CDS 411901 412416 . - 0 ID=Phyra74905;Parent=Phyra74905;rank=1 scaffold_10 . exon 411901 412416 . - . ID=Phyra74905.1;Parent=Phyra74905;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 417321 417953 . + . ID=Phyra74907;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000122;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 417321 417953 . + . ID=Phyra74907;Parent=Phyra74907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 417321 417953 . + 0 ID=Phyra74907;Parent=Phyra74907;rank=1 scaffold_10 . exon 417321 417953 . + . ID=Phyra74907.1;Parent=Phyra74907;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 414395 416062 . + . ID=Phyra93951;biotype=protein_coding;external_name=C_scaffold_10000032;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 414395 416062 . + . ID=Phyra93951;Parent=Phyra93951;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 414395 414970 . + 0 ID=Phyra93951;Parent=Phyra93951;rank=1 scaffold_10 . exon 414395 414970 . + . ID=Phyra93951.1;Parent=Phyra93951;constitutive=1;rank=1 scaffold_10 . CDS 414992 416062 . + 0 ID=Phyra93951;Parent=Phyra93951;rank=2 scaffold_10 . exon 414992 416062 . + . ID=Phyra93951.2;Parent=Phyra93951;constitutive=1;rank=2 scaffold_10 . biological_region 417680 417681 0.999 + . logic_name=eponine scaffold_10 . biological_region 422233 422235 0.999 - . logic_name=eponine scaffold_10 . biological_region 423408 423414 0.999 + . logic_name=eponine scaffold_10 . biological_region 423473 423482 0.999 + . logic_name=eponine scaffold_10 . biological_region 423491 423493 0.999 - . logic_name=eponine scaffold_10 . biological_region 423546 423552 0.999 + . logic_name=eponine scaffold_10 . biological_region 423602 423606 0.999 + . logic_name=eponine scaffold_10 . biological_region 423633 423634 0.999 + . logic_name=eponine scaffold_10 . biological_region 423788 423791 0.999 + . logic_name=eponine scaffold_10 . biological_region 423863 423867 0.999 + . logic_name=eponine scaffold_10 . biological_region 424643 424645 0.999 + . logic_name=eponine scaffold_10 . biological_region 426413 426418 0.999 + . logic_name=eponine scaffold_10 . biological_region 426452 426453 0.999 + . logic_name=eponine scaffold_10 . biological_region 426470 426472 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 421653 422501 . - . ID=Phyra71259;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_10000012;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 421653 422501 . - . ID=Phyra71259;Parent=Phyra71259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 421653 422501 . - 0 ID=Phyra71259;Parent=Phyra71259;rank=1 scaffold_10 . exon 421653 422501 . - . ID=Phyra71259.1;Parent=Phyra71259;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 418011 418595 . - . ID=Phyra74908;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000123;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 418011 418595 . - . ID=Phyra74908;Parent=Phyra74908;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 418011 418595 . - 0 ID=Phyra74908;Parent=Phyra74908;rank=1 scaffold_10 . exon 418011 418595 . - . ID=Phyra74908.1;Parent=Phyra74908;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 423391 425536 . + . ID=Phyra74910;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000125;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 423391 425536 . + . ID=Phyra74910;Parent=Phyra74910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 423391 424746 . + 0 ID=Phyra74910;Parent=Phyra74910;rank=1 scaffold_10 . exon 423391 424746 . + . ID=Phyra74910.1;Parent=Phyra74910;constitutive=1;rank=1 scaffold_10 . CDS 424835 425536 . + 0 ID=Phyra74910;Parent=Phyra74910;rank=2 scaffold_10 . exon 424835 425536 . + . ID=Phyra74910.2;Parent=Phyra74910;constitutive=1;rank=2 scaffold_10 ensembl protein_coding_gene 426386 430161 . - . ID=Phyra74911;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000126;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 426386 430161 . - . ID=Phyra74911;Parent=Phyra74911;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 426386 429310 . - 0 ID=Phyra74911;Parent=Phyra74911;rank=3 scaffold_10 . exon 426386 429310 . - . ID=Phyra74911.3;Parent=Phyra74911;constitutive=1;rank=3 scaffold_10 . CDS 429339 429680 . - 0 ID=Phyra74911;Parent=Phyra74911;rank=2 scaffold_10 . CDS 429709 430161 . - 0 ID=Phyra74911;Parent=Phyra74911;rank=1 scaffold_10 . repeat_region 428360 428506 . ? . description=trf scaffold_10 . repeat_region 428478 428599 . ? . description=trf scaffold_10 . repeat_region 428502 428632 . ? . description=trf scaffold_10 . repeat_region 428508 428608 . ? . description=trf scaffold_10 . repeat_region 429013 429810 . ? . description=trf scaffold_10 . repeat_region 429135 429475 . ? . description=trf scaffold_10 . repeat_region 429505 429788 . ? . description=trf scaffold_10 . repeat_region 429869 429918 . ? . description=trf scaffold_10 . repeat_region 437015 437047 . ? . description=trf scaffold_10 . repeat_region 437240 437313 . ? . description=trf scaffold_10 . repeat_region 437240 437313 . ? . description=dust scaffold_10 . exon 429339 429680 . - . ID=Phyra74911.2;Parent=Phyra74911;constitutive=1;rank=2 scaffold_10 . exon 429709 430161 . - . ID=Phyra74911.1;Parent=Phyra74911;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 431034 433297 . - . ID=Phyra74912;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000127;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 431034 433297 . - . ID=Phyra74912;Parent=Phyra74912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 431034 431227 . - 0 ID=Phyra74912;Parent=Phyra74912;rank=5 scaffold_10 . exon 431034 431227 . - . ID=Phyra74912.5;Parent=Phyra74912;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 . CDS 431413 432736 . - 0 ID=Phyra74912;Parent=Phyra74912;rank=4 scaffold_10 . exon 431413 432736 . - . ID=Phyra74912.4;Parent=Phyra74912;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_10 . CDS 432799 432855 . - 0 ID=Phyra74912;Parent=Phyra74912;rank=3 scaffold_10 . exon 432799 432855 . - . ID=Phyra74912.3;Parent=Phyra74912;constitutive=1;rank=3 scaffold_10 . CDS 432992 433155 . - 0 ID=Phyra74912;Parent=Phyra74912;rank=2 scaffold_10 . exon 432992 433155 . - . ID=Phyra74912.2;Parent=Phyra74912;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 433228 433297 . - 0 ID=Phyra74912;Parent=Phyra74912;rank=1 scaffold_10 . exon 433228 433297 . - . ID=Phyra74912.1;Parent=Phyra74912;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 433922 437320 . + . ID=Phyra74913;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000128;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 433922 437320 . + . ID=Phyra74913;Parent=Phyra74913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 433922 435761 . + 0 ID=Phyra74913;Parent=Phyra74913;rank=1 scaffold_10 . exon 433922 435761 . + . ID=Phyra74913.1;Parent=Phyra74913;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 435843 436599 . + 0 ID=Phyra74913;Parent=Phyra74913;rank=2 scaffold_10 . exon 435843 436599 . + . ID=Phyra74913.2;Parent=Phyra74913;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_10 . CDS 436715 436929 . + 0 ID=Phyra74913;Parent=Phyra74913;rank=3 scaffold_10 . exon 436715 436929 . + . ID=Phyra74913.3;Parent=Phyra74913;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 437190 437320 . + 0 ID=Phyra74913;Parent=Phyra74913;rank=4 scaffold_10 . exon 437190 437320 . + . ID=Phyra74913.4;Parent=Phyra74913;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . biological_region 438172 438176 0.999 + . logic_name=eponine scaffold_10 . biological_region 439796 439797 0.999 - . logic_name=eponine scaffold_10 . biological_region 445236 445237 0.999 + . logic_name=eponine scaffold_10 . biological_region 445276 445278 0.999 - . logic_name=eponine scaffold_10 . biological_region 445733 445738 0.999 + . logic_name=eponine scaffold_10 . biological_region 446169 446172 0.999 + . logic_name=eponine scaffold_10 . biological_region 447230 447233 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 438681 439262 . + . ID=Phyra74914;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000129;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 438681 439262 . + . ID=Phyra74914;Parent=Phyra74914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 438681 439262 . + 0 ID=Phyra74914;Parent=Phyra74914;rank=1 scaffold_10 . exon 438681 439262 . + . ID=Phyra74914.1;Parent=Phyra74914;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 445047 445991 . + . ID=Phyra74916;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000131;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 445047 445991 . + . ID=Phyra74916;Parent=Phyra74916;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 445047 445991 . + 0 ID=Phyra74916;Parent=Phyra74916;rank=1 scaffold_10 . exon 445047 445991 . + . ID=Phyra74916.1;Parent=Phyra74916;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 446077 448864 . + . ID=Phyra74917;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000132;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 446077 448864 . + . ID=Phyra74917;Parent=Phyra74917;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 446077 446124 . + 0 ID=Phyra74917;Parent=Phyra74917;rank=1 scaffold_10 . exon 446077 446124 . + . ID=Phyra74917.1;Parent=Phyra74917;constitutive=1;rank=1 scaffold_10 . CDS 446188 447564 . + 0 ID=Phyra74917;Parent=Phyra74917;rank=2 scaffold_10 . exon 446188 447564 . + . ID=Phyra74917.2;Parent=Phyra74917;constitutive=1;rank=2 scaffold_10 . CDS 447771 447873 . + 0 ID=Phyra74917;Parent=Phyra74917;rank=3 scaffold_10 . CDS 447932 448049 . + 0 ID=Phyra74917;Parent=Phyra74917;rank=4 scaffold_10 . CDS 448122 448218 . + 0 ID=Phyra74917;Parent=Phyra74917;rank=5 scaffold_10 . CDS 448301 448390 . + 0 ID=Phyra74917;Parent=Phyra74917;rank=6 scaffold_10 . CDS 448474 448559 . + 0 ID=Phyra74917;Parent=Phyra74917;rank=7 scaffold_10 . CDS 448651 448864 . + 0 ID=Phyra74917;Parent=Phyra74917;rank=8 scaffold_10 ensembl protein_coding_gene 440581 444641 . - . ID=Phyra93954;biotype=protein_coding;external_name=C_scaffold_10000035;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 440581 444641 . - . ID=Phyra93954;Parent=Phyra93954;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 440581 440711 . - 0 ID=Phyra93954;Parent=Phyra93954;rank=10 scaffold_10 . exon 440581 440711 . - . ID=Phyra93954.10;Parent=Phyra93954;constitutive=1;ensembl_phase=1;rank=10 scaffold_10 . CDS 440972 441659 . - 0 ID=Phyra93954;Parent=Phyra93954;rank=9 scaffold_10 . exon 440972 441659 . - . ID=Phyra93954.9;Parent=Phyra93954;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_10 . CDS 441737 441814 . - 0 ID=Phyra93954;Parent=Phyra93954;rank=8 scaffold_10 . exon 441737 441814 . - . ID=Phyra93954.8;Parent=Phyra93954;constitutive=1;rank=8 scaffold_10 . CDS 441899 442030 . - 0 ID=Phyra93954;Parent=Phyra93954;rank=7 scaffold_10 . exon 441899 442030 . - . ID=Phyra93954.7;Parent=Phyra93954;constitutive=1;rank=7 scaffold_10 . CDS 442107 442170 . - 0 ID=Phyra93954;Parent=Phyra93954;rank=6 scaffold_10 . exon 442107 442170 . - . ID=Phyra93954.6;Parent=Phyra93954;constitutive=1;ensembl_phase=2;rank=6 scaffold_10 . CDS 442229 442371 . - 0 ID=Phyra93954;Parent=Phyra93954;rank=5 scaffold_10 . exon 442229 442371 . - . ID=Phyra93954.5;Parent=Phyra93954;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_10 . CDS 442446 442634 . - 0 ID=Phyra93954;Parent=Phyra93954;rank=4 scaffold_10 . exon 442446 442634 . - . ID=Phyra93954.4;Parent=Phyra93954;constitutive=1;rank=4 scaffold_10 . CDS 442704 443344 . - 0 ID=Phyra93954;Parent=Phyra93954;rank=3 scaffold_10 . exon 442704 443344 . - . ID=Phyra93954.3;Parent=Phyra93954;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 443432 444083 . - 0 ID=Phyra93954;Parent=Phyra93954;rank=2 scaffold_10 . exon 443432 444083 . - . ID=Phyra93954.2;Parent=Phyra93954;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 444225 444641 . - 0 ID=Phyra93954;Parent=Phyra93954;rank=1 scaffold_10 . exon 444225 444641 . - . ID=Phyra93954.1;Parent=Phyra93954;constitutive=1;rank=1 scaffold_10 . repeat_region 447619 447637 . ? . description=dust scaffold_10 . repeat_region 449705 449780 . ? . description=trf scaffold_10 . repeat_region 449706 449772 . ? . description=trf scaffold_10 . repeat_region 449706 449800 . ? . description=trf scaffold_10 . repeat_region 449785 449830 . ? . description=trf scaffold_10 . repeat_region 450039 450082 . ? . description=dust scaffold_10 . repeat_region 450040 450078 . ? . description=trf scaffold_10 . repeat_region 454730 454882 . ? . description=trf scaffold_10 . exon 447771 447873 . + . ID=Phyra74917.3;Parent=Phyra74917;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . exon 447932 448049 . + . ID=Phyra74917.4;Parent=Phyra74917;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_10 . exon 448122 448218 . + . ID=Phyra74917.5;Parent=Phyra74917;constitutive=1;ensembl_phase=2;rank=5 scaffold_10 . exon 448301 448390 . + . ID=Phyra74917.6;Parent=Phyra74917;constitutive=1;rank=6 scaffold_10 . exon 448474 448559 . + . ID=Phyra74917.7;Parent=Phyra74917;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_10 . exon 448651 448864 . + . ID=Phyra74917.8;Parent=Phyra74917;constitutive=1;ensembl_phase=2;rank=8 scaffold_10 ensembl protein_coding_gene 449087 451443 . - . ID=Phyra74918;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000133;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 449087 451443 . - . ID=Phyra74918;Parent=Phyra74918;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 449087 449233 . - 0 ID=Phyra74918;Parent=Phyra74918;rank=4 scaffold_10 . exon 449087 449233 . - . ID=Phyra74918.4;Parent=Phyra74918;constitutive=1;rank=4 scaffold_10 . CDS 449301 449429 . - 0 ID=Phyra74918;Parent=Phyra74918;rank=3 scaffold_10 . exon 449301 449429 . - . ID=Phyra74918.3;Parent=Phyra74918;constitutive=1;rank=3 scaffold_10 . CDS 449501 450689 . - 0 ID=Phyra74918;Parent=Phyra74918;rank=2 scaffold_10 . exon 449501 450689 . - . ID=Phyra74918.2;Parent=Phyra74918;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 450815 451443 . - 0 ID=Phyra74918;Parent=Phyra74918;rank=1 scaffold_10 . exon 450815 451443 . - . ID=Phyra74918.1;Parent=Phyra74918;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 451867 452657 . - . ID=Phyra74919;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000134;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 451867 452657 . - . ID=Phyra74919;Parent=Phyra74919;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 451867 452079 . - 0 ID=Phyra74919;Parent=Phyra74919;rank=4 scaffold_10 . exon 451867 452079 . - . ID=Phyra74919.4;Parent=Phyra74919;constitutive=1;rank=4 scaffold_10 . CDS 452142 452237 . - 0 ID=Phyra74919;Parent=Phyra74919;rank=3 scaffold_10 . exon 452142 452237 . - . ID=Phyra74919.3;Parent=Phyra74919;constitutive=1;rank=3 scaffold_10 . CDS 452305 452483 . - 0 ID=Phyra74919;Parent=Phyra74919;rank=2 scaffold_10 . exon 452305 452483 . - . ID=Phyra74919.2;Parent=Phyra74919;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 452552 452657 . - 0 ID=Phyra74919;Parent=Phyra74919;rank=1 scaffold_10 . exon 452552 452657 . - . ID=Phyra74919.1;Parent=Phyra74919;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 453158 458827 . + . ID=Phyra74920;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000135;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 453158 458827 . + . ID=Phyra74920;Parent=Phyra74920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 453158 458827 . + 0 ID=Phyra74920;Parent=Phyra74920;rank=1 scaffold_10 . exon 453158 458827 . + . ID=Phyra74920.1;Parent=Phyra74920;constitutive=1;rank=1 scaffold_10 . biological_region 458573 458577 0.999 + . logic_name=eponine scaffold_10 . biological_region 459112 459116 0.999 - . logic_name=eponine scaffold_10 . biological_region 459592 459594 0.999 + . logic_name=eponine scaffold_10 . biological_region 460699 460702 0.999 + . logic_name=eponine scaffold_10 . biological_region 460754 460756 0.999 - . logic_name=eponine scaffold_10 . biological_region 461075 461075 0.999 + . logic_name=eponine scaffold_10 . biological_region 461527 461533 0.999 + . logic_name=eponine scaffold_10 . biological_region 461652 461656 0.999 - . logic_name=eponine scaffold_10 . biological_region 463305 463309 0.999 - . logic_name=eponine scaffold_10 . biological_region 464511 464516 0.999 + . logic_name=eponine scaffold_10 . biological_region 464611 464612 0.999 - . logic_name=eponine scaffold_10 . biological_region 464628 464635 0.999 - . logic_name=eponine scaffold_10 . biological_region 467037 467038 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 466224 467129 . - . ID=Phyra71260;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_10000013;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 466224 467129 . - . ID=Phyra71260;Parent=Phyra71260;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 466224 466709 . - 0 ID=Phyra71260;Parent=Phyra71260;rank=3 scaffold_10 . exon 466224 466709 . - . ID=Phyra71260.3;Parent=Phyra71260;constitutive=1;rank=3 scaffold_10 . CDS 466778 466906 . - 0 ID=Phyra71260;Parent=Phyra71260;rank=2 scaffold_10 . exon 466778 466906 . - . ID=Phyra71260.2;Parent=Phyra71260;constitutive=1;rank=2 scaffold_10 . CDS 467013 467129 . - 0 ID=Phyra71260;Parent=Phyra71260;rank=1 scaffold_10 . exon 467013 467129 . - . ID=Phyra71260.1;Parent=Phyra71260;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 459023 462106 . + . ID=Phyra74921;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000136;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 459023 462106 . + . ID=Phyra74921;Parent=Phyra74921;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 459023 462106 . + 0 ID=Phyra74921;Parent=Phyra74921;rank=1 scaffold_10 . exon 459023 462106 . + . ID=Phyra74921.1;Parent=Phyra74921;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 462247 463610 . - . ID=Phyra74922;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000137;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 462247 463610 . - . ID=Phyra74922;Parent=Phyra74922;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 462247 462742 . - 0 ID=Phyra74922;Parent=Phyra74922;rank=4 scaffold_10 . exon 462247 462742 . - . ID=Phyra74922.4;Parent=Phyra74922;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 462811 462934 . - 0 ID=Phyra74922;Parent=Phyra74922;rank=3 scaffold_10 . exon 462811 462934 . - . ID=Phyra74922.3;Parent=Phyra74922;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_10 . CDS 463003 463343 . - 0 ID=Phyra74922;Parent=Phyra74922;rank=2 scaffold_10 . exon 463003 463343 . - . ID=Phyra74922.2;Parent=Phyra74922;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 463552 463610 . - 0 ID=Phyra74922;Parent=Phyra74922;rank=1 scaffold_10 . exon 463552 463610 . - . ID=Phyra74922.1;Parent=Phyra74922;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 464464 465957 . + . ID=Phyra74923;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000138;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 464464 465957 . + . ID=Phyra74923;Parent=Phyra74923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 464464 465957 . + 0 ID=Phyra74923;Parent=Phyra74923;rank=1 scaffold_10 . exon 464464 465957 . + . ID=Phyra74923.1;Parent=Phyra74923;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 467268 468842 . - . ID=Phyra74925;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000140;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 467268 468842 . - . ID=Phyra74925;Parent=Phyra74925;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 467268 467441 . - 0 ID=Phyra74925;Parent=Phyra74925;rank=5 scaffold_10 . exon 467268 467441 . - . ID=Phyra74925.5;Parent=Phyra74925;constitutive=1;rank=5 scaffold_10 . CDS 467516 467812 . - 0 ID=Phyra74925;Parent=Phyra74925;rank=4 scaffold_10 . CDS 467875 468049 . - 0 ID=Phyra74925;Parent=Phyra74925;rank=3 scaffold_10 . CDS 468136 468634 . - 0 ID=Phyra74925;Parent=Phyra74925;rank=2 scaffold_10 . CDS 468698 468842 . - 0 ID=Phyra74925;Parent=Phyra74925;rank=1 scaffold_10 . repeat_region 468786 468805 . ? . description=trf scaffold_10 . repeat_region 474011 474037 . ? . description=dust scaffold_10 ensembl protein_coding_gene 470571 473114 . + . ID=Phyra71261;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_10000014;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 470571 473114 . + . ID=Phyra71261;Parent=Phyra71261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 470571 473114 . + 0 ID=Phyra71261;Parent=Phyra71261;rank=1 scaffold_10 . exon 470571 473114 . + . ID=Phyra71261.1;Parent=Phyra71261;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 473338 473853 . + . ID=Phyra71262;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_10000015;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 473338 473853 . + . ID=Phyra71262;Parent=Phyra71262;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 473338 473853 . + 0 ID=Phyra71262;Parent=Phyra71262;rank=1 scaffold_10 . exon 473338 473853 . + . ID=Phyra71262.1;Parent=Phyra71262;constitutive=1;rank=1 scaffold_10 . exon 467516 467812 . - . ID=Phyra74925.4;Parent=Phyra74925;constitutive=1;rank=4 scaffold_10 . exon 467875 468049 . - . ID=Phyra74925.3;Parent=Phyra74925;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . exon 468136 468634 . - . ID=Phyra74925.2;Parent=Phyra74925;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_10 . exon 468698 468842 . - . ID=Phyra74925.1;Parent=Phyra74925;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 469060 470352 . + . ID=Phyra74926;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000141;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 469060 470352 . + . ID=Phyra74926;Parent=Phyra74926;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 469060 469170 . + 0 ID=Phyra74926;Parent=Phyra74926;rank=1 scaffold_10 . exon 469060 469170 . + . ID=Phyra74926.1;Parent=Phyra74926;constitutive=1;rank=1 scaffold_10 . CDS 469245 469514 . + 0 ID=Phyra74926;Parent=Phyra74926;rank=2 scaffold_10 . exon 469245 469514 . + . ID=Phyra74926.2;Parent=Phyra74926;constitutive=1;rank=2 scaffold_10 . CDS 469582 470352 . + 0 ID=Phyra74926;Parent=Phyra74926;rank=3 scaffold_10 . exon 469582 470352 . + . ID=Phyra74926.3;Parent=Phyra74926;constitutive=1;rank=3 scaffold_10 ensembl protein_coding_gene 474281 477010 . - . ID=Phyra74929;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000144;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 474281 477010 . - . ID=Phyra74929;Parent=Phyra74929;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 474281 477010 . - 0 ID=Phyra74929;Parent=Phyra74929;rank=1 scaffold_10 . exon 474281 477010 . - . ID=Phyra74929.1;Parent=Phyra74929;constitutive=1;rank=1 scaffold_10 . biological_region 477328 477328 0.999 - . logic_name=eponine scaffold_10 . biological_region 477403 477406 0.999 + . logic_name=eponine scaffold_10 . biological_region 477442 477443 0.999 - . logic_name=eponine scaffold_10 . biological_region 478397 478397 0.999 + . logic_name=eponine scaffold_10 . biological_region 481678 481682 0.999 + . logic_name=eponine scaffold_10 . biological_region 481883 481883 0.999 + . logic_name=eponine scaffold_10 . biological_region 483767 483767 0.999 + . logic_name=eponine scaffold_10 . biological_region 484329 484334 0.999 + . logic_name=eponine scaffold_10 . biological_region 484359 484361 0.999 - . logic_name=eponine scaffold_10 . biological_region 484377 484381 0.999 - . logic_name=eponine scaffold_10 . biological_region 484434 484435 0.999 + . logic_name=eponine scaffold_10 . biological_region 484576 484579 0.999 + . logic_name=eponine scaffold_10 . biological_region 484925 484927 0.999 - . logic_name=eponine scaffold_10 . biological_region 484932 484933 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 480663 481937 . + . ID=Phyra74930;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000145;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 480663 481937 . + . ID=Phyra74930;Parent=Phyra74930;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 480663 481937 . + 0 ID=Phyra74930;Parent=Phyra74930;rank=1 scaffold_10 . exon 480663 481937 . + . ID=Phyra74930.1;Parent=Phyra74930;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 482605 484143 . - . ID=Phyra74931;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000146;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 482605 484143 . - . ID=Phyra74931;Parent=Phyra74931;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 482605 482948 . - 0 ID=Phyra74931;Parent=Phyra74931;rank=3 scaffold_10 . exon 482605 482948 . - . ID=Phyra74931.3;Parent=Phyra74931;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 482997 483673 . - 0 ID=Phyra74931;Parent=Phyra74931;rank=2 scaffold_10 . exon 482997 483673 . - . ID=Phyra74931.2;Parent=Phyra74931;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 483815 484143 . - 0 ID=Phyra74931;Parent=Phyra74931;rank=1 scaffold_10 . exon 483815 484143 . - . ID=Phyra74931.1;Parent=Phyra74931;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 485147 486442 . + . ID=Phyra74932;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000147;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 485147 486442 . + . ID=Phyra74932;Parent=Phyra74932;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 485147 485458 . + 0 ID=Phyra74932;Parent=Phyra74932;rank=1 scaffold_10 . exon 485147 485458 . + . ID=Phyra74932.1;Parent=Phyra74932;constitutive=1;rank=1 scaffold_10 . CDS 485504 485642 . + 0 ID=Phyra74932;Parent=Phyra74932;rank=2 scaffold_10 . exon 485504 485642 . + . ID=Phyra74932.2;Parent=Phyra74932;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 485848 485990 . + 0 ID=Phyra74932;Parent=Phyra74932;rank=3 scaffold_10 . exon 485848 485990 . + . ID=Phyra74932.3;Parent=Phyra74932;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 486062 486442 . + 0 ID=Phyra74932;Parent=Phyra74932;rank=4 scaffold_10 . exon 486062 486442 . + . ID=Phyra74932.4;Parent=Phyra74932;constitutive=1;rank=4 scaffold_10 . repeat_region 490222 490241 . ? . description=trf scaffold_10 . repeat_region 493696 493754 . ? . description=trf scaffold_10 . repeat_region 495960 500878 . ? . description=dust scaffold_10 ensembl protein_coding_gene 487710 494125 . + . ID=Phyra74933;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000148;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 487710 494125 . + . ID=Phyra74933;Parent=Phyra74933;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 487710 487934 . + 0 ID=Phyra74933;Parent=Phyra74933;rank=1 scaffold_10 . exon 487710 487934 . + . ID=Phyra74933.1;Parent=Phyra74933;constitutive=1;rank=1 scaffold_10 . CDS 488015 494125 . + 0 ID=Phyra74933;Parent=Phyra74933;rank=2 scaffold_10 . exon 488015 494125 . + . ID=Phyra74933.2;Parent=Phyra74933;constitutive=1;rank=2 scaffold_10 ensembl protein_coding_gene 494357 502119 . + . ID=Phyra74934;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000149;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 494357 502119 . + . ID=Phyra74934;Parent=Phyra74934;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 494357 494512 . + 0 ID=Phyra74934;Parent=Phyra74934;rank=1 scaffold_10 . exon 494357 494512 . + . ID=Phyra74934.1;Parent=Phyra74934;constitutive=1;rank=1 scaffold_10 . CDS 494580 495193 . + 0 ID=Phyra74934;Parent=Phyra74934;rank=2 scaffold_10 . exon 494580 495193 . + . ID=Phyra74934.2;Parent=Phyra74934;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 500988 502119 . + 0 ID=Phyra74934;Parent=Phyra74934;rank=3 scaffold_10 . biological_region 502767 502768 0.999 + . logic_name=eponine scaffold_10 . exon 500988 502119 . + . ID=Phyra74934.3;Parent=Phyra74934;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 ensembl protein_coding_gene 502351 506917 . + . ID=Phyra74935;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000150;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 502351 506917 . + . ID=Phyra74935;Parent=Phyra74935;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 502351 502506 . + 0 ID=Phyra74935;Parent=Phyra74935;rank=1 scaffold_10 . exon 502351 502506 . + . ID=Phyra74935.1;Parent=Phyra74935;constitutive=1;rank=1 scaffold_10 . CDS 502574 503825 . + 0 ID=Phyra74935;Parent=Phyra74935;rank=2 scaffold_10 . exon 502574 503825 . + . ID=Phyra74935.2;Parent=Phyra74935;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 504213 505971 . + 0 ID=Phyra74935;Parent=Phyra74935;rank=3 scaffold_10 . exon 504213 505971 . + . ID=Phyra74935.3;Parent=Phyra74935;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_10 . CDS 506091 506881 . + 0 ID=Phyra74935;Parent=Phyra74935;rank=4 scaffold_10 . exon 506091 506881 . + . ID=Phyra74935.4;Parent=Phyra74935;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 506910 506917 . + 0 ID=Phyra74935;Parent=Phyra74935;rank=5 scaffold_10 . exon 506910 506917 . + . ID=Phyra74935.5;Parent=Phyra74935;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 . repeat_region 507034 507059 . ? . description=trf scaffold_10 . repeat_region 507194 507243 . ? . description=dust scaffold_10 . repeat_region 508252 508301 . ? . description=dust scaffold_10 . repeat_region 509058 509234 . ? . description=trf scaffold_10 . repeat_region 509058 509292 . ? . description=trf scaffold_10 . repeat_region 509117 509173 . ? . description=trf scaffold_10 . repeat_region 509405 509423 . ? . description=dust scaffold_10 . repeat_region 510290 510339 . ? . description=dust scaffold_10 . repeat_region 510631 510689 . ? . description=trf scaffold_10 . repeat_region 511406 511455 . ? . description=dust scaffold_10 . repeat_region 515144 515943 . ? . description=trf scaffold_10 . repeat_region 515968 516681 . ? . description=trf scaffold_10 . repeat_region 516150 516186 . ? . description=trf scaffold_10 . repeat_region 516327 516363 . ? . description=trf scaffold_10 . repeat_region 516504 516540 . ? . description=trf scaffold_10 . repeat_region 516893 517071 . ? . description=trf scaffold_10 . repeat_region 516893 517071 . ? . description=trf scaffold_10 ensembl pseudogene 507267 508251 . - . ID=Phyra38988;biotype=pseudogene;external_name=gwEuk.10.76.1;logic_name=jgi_phyra1 scaffold_10 ensembl pseudogene 507267 508251 . - . ID=Phyra38988;Parent=Phyra38988;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_10 . exon 507267 507649 . - . ID=Phyra38988.3;Parent=Phyra38988;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_10 . exon 507719 507794 . - . ID=Phyra38988.2;Parent=Phyra38988;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_10 . exon 507870 508251 . - . ID=Phyra38988.1;Parent=Phyra38988;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 510402 511060 . + . ID=Phyra74937;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000152;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 510402 511060 . + . ID=Phyra74937;Parent=Phyra74937;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 510402 510406 . + 0 ID=Phyra74937;Parent=Phyra74937;rank=1 scaffold_10 . exon 510402 510406 . + . ID=Phyra74937.1;Parent=Phyra74937;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 510460 511060 . + 0 ID=Phyra74937;Parent=Phyra74937;rank=2 scaffold_10 . exon 510460 511060 . + . ID=Phyra74937.2;Parent=Phyra74937;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 ensembl protein_coding_gene 514729 519696 . + . ID=Phyra74938;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000153;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 514729 519696 . + . ID=Phyra74938;Parent=Phyra74938;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 514729 515957 . + 0 ID=Phyra74938;Parent=Phyra74938;rank=1 scaffold_10 . exon 514729 515957 . + . ID=Phyra74938.1;Parent=Phyra74938;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 516048 519696 . + 0 ID=Phyra74938;Parent=Phyra74938;rank=2 scaffold_10 . exon 516048 519696 . + . ID=Phyra74938.2;Parent=Phyra74938;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . biological_region 519255 519255 0.999 - . logic_name=eponine scaffold_10 . biological_region 520736 520739 0.999 - . logic_name=eponine scaffold_10 . biological_region 526189 526191 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 520667 523950 . + . ID=Phyra74939;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000154;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 520667 523950 . + . ID=Phyra74939;Parent=Phyra74939;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 520667 520834 . + 0 ID=Phyra74939;Parent=Phyra74939;rank=1 scaffold_10 . exon 520667 520834 . + . ID=Phyra74939.1;Parent=Phyra74939;constitutive=1;rank=1 scaffold_10 . CDS 520897 523098 . + 0 ID=Phyra74939;Parent=Phyra74939;rank=2 scaffold_10 . exon 520897 523098 . + . ID=Phyra74939.2;Parent=Phyra74939;constitutive=1;rank=2 scaffold_10 . CDS 523237 523258 . + 0 ID=Phyra74939;Parent=Phyra74939;rank=3 scaffold_10 . exon 523237 523258 . + . ID=Phyra74939.3;Parent=Phyra74939;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 523334 523446 . + 0 ID=Phyra74939;Parent=Phyra74939;rank=4 scaffold_10 . exon 523334 523446 . + . ID=Phyra74939.4;Parent=Phyra74939;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 523535 523681 . + 0 ID=Phyra74939;Parent=Phyra74939;rank=5 scaffold_10 . exon 523535 523681 . + . ID=Phyra74939.5;Parent=Phyra74939;constitutive=1;rank=5 scaffold_10 . CDS 523773 523831 . + 0 ID=Phyra74939;Parent=Phyra74939;rank=6 scaffold_10 . exon 523773 523831 . + . ID=Phyra74939.6;Parent=Phyra74939;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_10 . CDS 523938 523950 . + 0 ID=Phyra74939;Parent=Phyra74939;rank=7 scaffold_10 . exon 523938 523950 . + . ID=Phyra74939.7;Parent=Phyra74939;constitutive=1;ensembl_phase=2;rank=7 scaffold_10 ensembl protein_coding_gene 526113 527313 . + . ID=Phyra74941;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000156;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 526113 527313 . + . ID=Phyra74941;Parent=Phyra74941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 526113 526653 . + 0 ID=Phyra74941;Parent=Phyra74941;rank=1 scaffold_10 . exon 526113 526653 . + . ID=Phyra74941.1;Parent=Phyra74941;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 526741 526820 . + 0 ID=Phyra74941;Parent=Phyra74941;rank=2 scaffold_10 . exon 526741 526820 . + . ID=Phyra74941.2;Parent=Phyra74941;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 526891 527313 . + 0 ID=Phyra74941;Parent=Phyra74941;rank=3 scaffold_10 . exon 526891 527313 . + . ID=Phyra74941.3;Parent=Phyra74941;constitutive=1;rank=3 scaffold_10 ensembl protein_coding_gene 524326 525921 . + . ID=Phyra93960;biotype=protein_coding;external_name=C_scaffold_10000041;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 524326 525921 . + . ID=Phyra93960;Parent=Phyra93960;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 524326 525921 . + 0 ID=Phyra93960;Parent=Phyra93960;rank=1 scaffold_10 . exon 524326 525921 . + . ID=Phyra93960.1;Parent=Phyra93960;constitutive=1;rank=1 scaffold_10 . repeat_region 534202 534378 . ? . description=trf scaffold_10 . repeat_region 534202 534436 . ? . description=trf scaffold_10 . repeat_region 534261 534317 . ? . description=trf scaffold_10 . repeat_region 534549 534567 . ? . description=dust scaffold_10 ensembl protein_coding_gene 527425 528348 . - . ID=Phyra74942;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000157;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 527425 528348 . - . ID=Phyra74942;Parent=Phyra74942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 527425 528348 . - 0 ID=Phyra74942;Parent=Phyra74942;rank=1 scaffold_10 . exon 527425 528348 . - . ID=Phyra74942.1;Parent=Phyra74942;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 534839 537778 . - . ID=Phyra74943;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000158;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 534839 537778 . - . ID=Phyra74943;Parent=Phyra74943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 534839 537778 . - 0 ID=Phyra74943;Parent=Phyra74943;rank=1 scaffold_10 . exon 534839 537778 . - . ID=Phyra74943.1;Parent=Phyra74943;constitutive=1;rank=1 scaffold_10 . biological_region 537386 537389 0.999 + . logic_name=eponine scaffold_10 . biological_region 537452 537455 0.999 - . logic_name=eponine scaffold_10 . biological_region 537659 537663 0.999 + . logic_name=eponine scaffold_10 . biological_region 537700 537704 0.999 - . logic_name=eponine scaffold_10 . biological_region 537750 537751 0.999 - . logic_name=eponine scaffold_10 . biological_region 539119 539119 0.999 + . logic_name=eponine scaffold_10 . biological_region 539793 539798 0.999 + . logic_name=eponine scaffold_10 . biological_region 543295 543299 0.999 + . logic_name=eponine scaffold_10 . biological_region 543361 543363 0.999 - . logic_name=eponine scaffold_10 . biological_region 543413 543417 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 539041 539421 . + . ID=Phyra74944;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000159;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 539041 539421 . + . ID=Phyra74944;Parent=Phyra74944;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 539041 539421 . + 0 ID=Phyra74944;Parent=Phyra74944;rank=1 scaffold_10 . exon 539041 539421 . + . ID=Phyra74944.1;Parent=Phyra74944;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 539543 540219 . - . ID=Phyra74945;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000160;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 539543 540219 . - . ID=Phyra74945;Parent=Phyra74945;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 539543 539980 . - 0 ID=Phyra74945;Parent=Phyra74945;rank=2 scaffold_10 . exon 539543 539980 . - . ID=Phyra74945.2;Parent=Phyra74945;constitutive=1;rank=2 scaffold_10 . CDS 540055 540219 . - 0 ID=Phyra74945;Parent=Phyra74945;rank=1 scaffold_10 . exon 540055 540219 . - . ID=Phyra74945.1;Parent=Phyra74945;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 546069 548312 . + . ID=Phyra74948;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000163;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 546069 548312 . + . ID=Phyra74948;Parent=Phyra74948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 546069 548312 . + 0 ID=Phyra74948;Parent=Phyra74948;rank=1 scaffold_10 . exon 546069 548312 . + . ID=Phyra74948.1;Parent=Phyra74948;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 540348 543626 . - . ID=Phyra93964;biotype=protein_coding;external_name=C_scaffold_10000045;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 540348 543626 . - . ID=Phyra93964;Parent=Phyra93964;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 540348 541039 . - 0 ID=Phyra93964;Parent=Phyra93964;rank=5 scaffold_10 . exon 540348 541039 . - . ID=Phyra93964.5;Parent=Phyra93964;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 . CDS 541148 541279 . - 0 ID=Phyra93964;Parent=Phyra93964;rank=4 scaffold_10 . exon 541148 541279 . - . ID=Phyra93964.4;Parent=Phyra93964;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 541598 542255 . - 0 ID=Phyra93964;Parent=Phyra93964;rank=3 scaffold_10 . exon 541598 542255 . - . ID=Phyra93964.3;Parent=Phyra93964;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 542325 543359 . - 0 ID=Phyra93964;Parent=Phyra93964;rank=2 scaffold_10 . exon 542325 543359 . - . ID=Phyra93964.2;Parent=Phyra93964;constitutive=1;rank=2 scaffold_10 . CDS 543393 543626 . - 0 ID=Phyra93964;Parent=Phyra93964;rank=1 scaffold_10 . exon 543393 543626 . - . ID=Phyra93964.1;Parent=Phyra93964;constitutive=1;rank=1 scaffold_10 . repeat_region 549537 549549 . ? . description=dust scaffold_10 ensembl protein_coding_gene 550282 552249 . + . ID=Phyra74949;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000164;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 550282 552249 . + . ID=Phyra74949;Parent=Phyra74949;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 550282 552249 . + 0 ID=Phyra74949;Parent=Phyra74949;rank=1 scaffold_10 . exon 550282 552249 . + . ID=Phyra74949.1;Parent=Phyra74949;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 555065 555544 . + . ID=Phyra74950;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000165;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 555065 555544 . + . ID=Phyra74950;Parent=Phyra74950;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 555065 555544 . + 0 ID=Phyra74950;Parent=Phyra74950;rank=1 scaffold_10 . exon 555065 555544 . + . ID=Phyra74950.1;Parent=Phyra74950;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 556698 558803 . + . ID=Phyra74951;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000166;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 556698 558803 . + . ID=Phyra74951;Parent=Phyra74951;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 556698 558803 . + 0 ID=Phyra74951;Parent=Phyra74951;rank=1 scaffold_10 . exon 556698 558803 . + . ID=Phyra74951.1;Parent=Phyra74951;constitutive=1;rank=1 scaffold_10 . biological_region 556828 556828 0.999 + . logic_name=eponine scaffold_10 . biological_region 556879 556883 0.999 + . logic_name=eponine scaffold_10 . biological_region 556957 556960 0.999 - . logic_name=eponine scaffold_10 . biological_region 559069 559070 0.999 + . logic_name=eponine scaffold_10 . biological_region 560193 560193 0.999 - . logic_name=eponine scaffold_10 . biological_region 561067 561072 0.999 + . logic_name=eponine scaffold_10 . biological_region 561226 561231 0.999 + . logic_name=eponine scaffold_10 . biological_region 562095 562099 0.999 + . logic_name=eponine scaffold_10 . biological_region 562131 562132 0.999 + . logic_name=eponine scaffold_10 . biological_region 562184 562187 0.999 - . logic_name=eponine scaffold_10 . biological_region 562902 562903 0.999 + . logic_name=eponine scaffold_10 . repeat_region 563353 563394 . ? . description=trf scaffold_10 ensembl protein_coding_gene 558952 559596 . - . ID=Phyra74952;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000167;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 558952 559596 . - . ID=Phyra74952;Parent=Phyra74952;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 558952 559596 . - 0 ID=Phyra74952;Parent=Phyra74952;rank=1 scaffold_10 . exon 558952 559596 . - . ID=Phyra74952.1;Parent=Phyra74952;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 560837 562510 . - . ID=Phyra74953;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000168;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 560837 562510 . - . ID=Phyra74953;Parent=Phyra74953;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 560837 561471 . - 0 ID=Phyra74953;Parent=Phyra74953;rank=3 scaffold_10 . exon 560837 561471 . - . ID=Phyra74953.3;Parent=Phyra74953;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 561568 561578 . - 0 ID=Phyra74953;Parent=Phyra74953;rank=2 scaffold_10 . exon 561568 561578 . - . ID=Phyra74953.2;Parent=Phyra74953;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 562011 562510 . - 0 ID=Phyra74953;Parent=Phyra74953;rank=1 scaffold_10 . exon 562011 562510 . - . ID=Phyra74953.1;Parent=Phyra74953;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 565133 566017 . - . ID=Phyra74955;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000170;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 565133 566017 . - . ID=Phyra74955;Parent=Phyra74955;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 565133 566017 . - 0 ID=Phyra74955;Parent=Phyra74955;rank=1 scaffold_10 . exon 565133 566017 . - . ID=Phyra74955.1;Parent=Phyra74955;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 563113 564153 . + . ID=Phyra93967;biotype=protein_coding;external_name=C_scaffold_10000048;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 563113 564153 . + . ID=Phyra93967;Parent=Phyra93967;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 563113 564153 . + 0 ID=Phyra93967;Parent=Phyra93967;rank=1 scaffold_10 . exon 563113 564153 . + . ID=Phyra93967.1;Parent=Phyra93967;constitutive=1;rank=1 scaffold_10 . repeat_region 568481 568530 . ? . description=dust scaffold_10 ensembl protein_coding_gene 572604 574217 . + . ID=Phyra71263;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_10000016;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 572604 574217 . + . ID=Phyra71263;Parent=Phyra71263;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 572604 572784 . + 0 ID=Phyra71263;Parent=Phyra71263;rank=1 scaffold_10 . exon 572604 572784 . + . ID=Phyra71263.1;Parent=Phyra71263;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 572812 572855 . + 0 ID=Phyra71263;Parent=Phyra71263;rank=2 scaffold_10 . exon 572812 572855 . + . ID=Phyra71263.2;Parent=Phyra71263;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 572928 572996 . + 0 ID=Phyra71263;Parent=Phyra71263;rank=3 scaffold_10 . exon 572928 572996 . + . ID=Phyra71263.3;Parent=Phyra71263;constitutive=1;rank=3 scaffold_10 . CDS 573072 574217 . + 0 ID=Phyra71263;Parent=Phyra71263;rank=4 scaffold_10 . exon 573072 574217 . + . ID=Phyra71263.4;Parent=Phyra71263;constitutive=1;rank=4 scaffold_10 ensembl protein_coding_gene 567085 570751 . - . ID=Phyra74956;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000171;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 567085 570751 . - . ID=Phyra74956;Parent=Phyra74956;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 567085 568198 . - 0 ID=Phyra74956;Parent=Phyra74956;rank=4 scaffold_10 . exon 567085 568198 . - . ID=Phyra74956.4;Parent=Phyra74956;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 568275 568420 . - 0 ID=Phyra74956;Parent=Phyra74956;rank=3 scaffold_10 . exon 568275 568420 . - . ID=Phyra74956.3;Parent=Phyra74956;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_10 . CDS 568557 568919 . - 0 ID=Phyra74956;Parent=Phyra74956;rank=2 scaffold_10 . exon 568557 568919 . - . ID=Phyra74956.2;Parent=Phyra74956;constitutive=1;rank=2 scaffold_10 . CDS 569195 570751 . - 0 ID=Phyra74956;Parent=Phyra74956;rank=1 scaffold_10 . exon 569195 570751 . - . ID=Phyra74956.1;Parent=Phyra74956;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 571170 572328 . - . ID=Phyra74957;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000172;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 571170 572328 . - . ID=Phyra74957;Parent=Phyra74957;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 571170 571445 . - 0 ID=Phyra74957;Parent=Phyra74957;rank=2 scaffold_10 . exon 571170 571445 . - . ID=Phyra74957.2;Parent=Phyra74957;constitutive=1;rank=2 scaffold_10 . CDS 571516 572328 . - 0 ID=Phyra74957;Parent=Phyra74957;rank=1 scaffold_10 . exon 571516 572328 . - . ID=Phyra74957.1;Parent=Phyra74957;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 575642 579107 . - . ID=Phyra74959;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000174;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 575642 579107 . - . ID=Phyra74959;Parent=Phyra74959;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 575642 577545 . - 0 ID=Phyra74959;Parent=Phyra74959;rank=2 scaffold_10 . exon 575642 577545 . - . ID=Phyra74959.2;Parent=Phyra74959;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 577649 579107 . - 0 ID=Phyra74959;Parent=Phyra74959;rank=1 scaffold_10 . biological_region 578001 578004 0.999 + . logic_name=eponine scaffold_10 . biological_region 578046 578052 0.999 + . logic_name=eponine scaffold_10 . biological_region 578256 578260 0.999 + . logic_name=eponine scaffold_10 . biological_region 578309 578311 0.999 - . logic_name=eponine scaffold_10 . biological_region 578350 578356 0.999 - . logic_name=eponine scaffold_10 . biological_region 578406 578410 0.999 + . logic_name=eponine scaffold_10 . biological_region 578761 578771 0.999 - . logic_name=eponine scaffold_10 . biological_region 578767 578768 0.999 + . logic_name=eponine scaffold_10 . biological_region 578790 578794 0.999 - . logic_name=eponine scaffold_10 . biological_region 579533 579534 0.999 - . logic_name=eponine scaffold_10 . biological_region 579587 579590 0.999 + . logic_name=eponine scaffold_10 . biological_region 579607 579609 0.999 + . logic_name=eponine scaffold_10 . biological_region 580261 580263 0.999 - . logic_name=eponine scaffold_10 . biological_region 582347 582351 0.999 - . logic_name=eponine scaffold_10 . repeat_region 583226 583395 . ? . description=trf scaffold_10 . repeat_region 583266 583373 . ? . description=trf scaffold_10 . repeat_region 583308 583380 . ? . description=trf scaffold_10 . biological_region 584068 584069 0.999 - . logic_name=eponine scaffold_10 . biological_region 584123 584124 0.999 + . logic_name=eponine scaffold_10 . biological_region 584143 584143 0.999 + . logic_name=eponine scaffold_10 . biological_region 584796 584798 0.999 - . logic_name=eponine scaffold_10 . exon 577649 579107 . - . ID=Phyra74959.1;Parent=Phyra74959;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 579354 581432 . + . ID=Phyra74960;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000175;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 579354 581432 . + . ID=Phyra74960;Parent=Phyra74960;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 579354 581031 . + 0 ID=Phyra74960;Parent=Phyra74960;rank=1 scaffold_10 . exon 579354 581031 . + . ID=Phyra74960.1;Parent=Phyra74960;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 581080 581432 . + 0 ID=Phyra74960;Parent=Phyra74960;rank=2 scaffold_10 . exon 581080 581432 . + . ID=Phyra74960.2;Parent=Phyra74960;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 ensembl protein_coding_gene 582091 583428 . - . ID=Phyra74961;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000176;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 582091 583428 . - . ID=Phyra74961;Parent=Phyra74961;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 582091 583428 . - 0 ID=Phyra74961;Parent=Phyra74961;rank=1 scaffold_10 . exon 582091 583428 . - . ID=Phyra74961.1;Parent=Phyra74961;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 583889 585958 . + . ID=Phyra74962;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000177;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 583889 585958 . + . ID=Phyra74962;Parent=Phyra74962;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 583889 585566 . + 0 ID=Phyra74962;Parent=Phyra74962;rank=1 scaffold_10 . exon 583889 585566 . + . ID=Phyra74962.1;Parent=Phyra74962;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 585615 585958 . + 0 ID=Phyra74962;Parent=Phyra74962;rank=2 scaffold_10 . exon 585615 585958 . + . ID=Phyra74962.2;Parent=Phyra74962;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 ensembl protein_coding_gene 586626 589615 . - . ID=Phyra74963;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000178;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 586626 589615 . - . ID=Phyra74963;Parent=Phyra74963;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 586626 587976 . - 0 ID=Phyra74963;Parent=Phyra74963;rank=7 scaffold_10 . exon 586626 587976 . - . ID=Phyra74963.7;Parent=Phyra74963;constitutive=1;ensembl_phase=2;rank=7 scaffold_10 . CDS 588194 588308 . - 0 ID=Phyra74963;Parent=Phyra74963;rank=6 scaffold_10 . exon 588194 588308 . - . ID=Phyra74963.6;Parent=Phyra74963;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_10 . CDS 588371 588596 . - 0 ID=Phyra74963;Parent=Phyra74963;rank=5 scaffold_10 . exon 588371 588596 . - . ID=Phyra74963.5;Parent=Phyra74963;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_10 . CDS 588867 588881 . - 0 ID=Phyra74963;Parent=Phyra74963;rank=4 scaffold_10 . exon 588867 588881 . - . ID=Phyra74963.4;Parent=Phyra74963;constitutive=1;rank=4 scaffold_10 . CDS 589001 589084 . - 0 ID=Phyra74963;Parent=Phyra74963;rank=3 scaffold_10 . exon 589001 589084 . - . ID=Phyra74963.3;Parent=Phyra74963;constitutive=1;rank=3 scaffold_10 . CDS 589119 589145 . - 0 ID=Phyra74963;Parent=Phyra74963;rank=2 scaffold_10 . exon 589119 589145 . - . ID=Phyra74963.2;Parent=Phyra74963;constitutive=1;rank=2 scaffold_10 . CDS 589385 589615 . - 0 ID=Phyra74963;Parent=Phyra74963;rank=1 scaffold_10 . exon 589385 589615 . - . ID=Phyra74963.1;Parent=Phyra74963;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 591506 593635 . - . ID=Phyra74964;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000179;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 591506 593635 . - . ID=Phyra74964;Parent=Phyra74964;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 591506 593635 . - 0 ID=Phyra74964;Parent=Phyra74964;rank=1 scaffold_10 . exon 591506 593635 . - . ID=Phyra74964.1;Parent=Phyra74964;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 594281 595367 . + . ID=Phyra74965;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000180;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 594281 595367 . + . ID=Phyra74965;Parent=Phyra74965;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 594281 595299 . + 0 ID=Phyra74965;Parent=Phyra74965;rank=1 scaffold_10 . exon 594281 595299 . + . ID=Phyra74965.1;Parent=Phyra74965;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 595334 595367 . + 0 ID=Phyra74965;Parent=Phyra74965;rank=2 scaffold_10 . exon 595334 595367 . + . ID=Phyra74965.2;Parent=Phyra74965;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 ensembl protein_coding_gene 595743 596699 . - . ID=Phyra74966;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000181;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 595743 596699 . - . ID=Phyra74966;Parent=Phyra74966;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 595743 596699 . - 0 ID=Phyra74966;Parent=Phyra74966;rank=1 scaffold_10 . exon 595743 596699 . - . ID=Phyra74966.1;Parent=Phyra74966;constitutive=1;rank=1 scaffold_10 . biological_region 596523 596525 0.999 - . logic_name=eponine scaffold_10 . biological_region 596591 596593 0.999 - . logic_name=eponine scaffold_10 . biological_region 597298 597304 0.999 + . logic_name=eponine scaffold_10 . biological_region 598396 598401 0.999 + . logic_name=eponine scaffold_10 . biological_region 599288 599289 0.999 + . logic_name=eponine scaffold_10 . biological_region 599698 599699 0.999 - . logic_name=eponine scaffold_10 . biological_region 600597 600598 0.999 + . logic_name=eponine scaffold_10 . biological_region 600664 600666 0.999 + . logic_name=eponine scaffold_10 . biological_region 600701 600705 0.999 + . logic_name=eponine scaffold_10 . biological_region 600733 600736 0.999 + . logic_name=eponine scaffold_10 . biological_region 600752 600754 0.999 - . logic_name=eponine scaffold_10 . biological_region 600764 600766 0.999 + . logic_name=eponine scaffold_10 . biological_region 600778 600783 0.999 - . logic_name=eponine scaffold_10 . biological_region 600804 600810 0.999 + . logic_name=eponine scaffold_10 . biological_region 600835 600842 0.999 - . logic_name=eponine scaffold_10 . repeat_region 601102 601161 . ? . description=trf scaffold_10 . repeat_region 601367 601677 . ? . description=trf scaffold_10 . repeat_region 601448 602996 . ? . description=trf scaffold_10 . repeat_region 604294 604302 . ? . description=dust scaffold_10 . biological_region 605159 605162 0.999 - . logic_name=eponine scaffold_10 . repeat_region 605691 605775 . ? . description=dust scaffold_10 . repeat_region 605703 605757 . ? . description=trf scaffold_10 . repeat_region 606080 606100 . ? . description=trf scaffold_10 . repeat_region 606080 606100 . ? . description=dust scaffold_10 ensembl protein_coding_gene 606148 606987 . - . ID=Phyra71264;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_10000017;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 606148 606987 . - . ID=Phyra71264;Parent=Phyra71264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 606148 606987 . - 0 ID=Phyra71264;Parent=Phyra71264;rank=1 scaffold_10 . exon 606148 606987 . - . ID=Phyra71264.1;Parent=Phyra71264;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 597439 599757 . + . ID=Phyra74967;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000182;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 597439 599757 . + . ID=Phyra74967;Parent=Phyra74967;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 597439 599757 . + 0 ID=Phyra74967;Parent=Phyra74967;rank=1 scaffold_10 . exon 597439 599757 . + . ID=Phyra74967.1;Parent=Phyra74967;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 600674 604411 . + . ID=Phyra74968;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000183;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 600674 604411 . + . ID=Phyra74968;Parent=Phyra74968;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 600674 604411 . + 0 ID=Phyra74968;Parent=Phyra74968;rank=1 scaffold_10 . exon 600674 604411 . + . ID=Phyra74968.1;Parent=Phyra74968;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 604646 605884 . - . ID=Phyra74969;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000184;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 604646 605884 . - . ID=Phyra74969;Parent=Phyra74969;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 604646 604689 . - 0 ID=Phyra74969;Parent=Phyra74969;rank=2 scaffold_10 . exon 604646 604689 . - . ID=Phyra74969.2;Parent=Phyra74969;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 604768 605884 . - 0 ID=Phyra74969;Parent=Phyra74969;rank=1 scaffold_10 . exon 604768 605884 . - . ID=Phyra74969.1;Parent=Phyra74969;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 609808 610703 . - . ID=Phyra74971;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000186;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 609808 610703 . - . ID=Phyra74971;Parent=Phyra74971;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 609808 609965 . - 0 ID=Phyra74971;Parent=Phyra74971;rank=4 scaffold_10 . exon 609808 609965 . - . ID=Phyra74971.4;Parent=Phyra74971;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 610038 610149 . - 0 ID=Phyra74971;Parent=Phyra74971;rank=3 scaffold_10 . exon 610038 610149 . - . ID=Phyra74971.3;Parent=Phyra74971;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 610215 610521 . - 0 ID=Phyra74971;Parent=Phyra74971;rank=2 scaffold_10 . exon 610215 610521 . - . ID=Phyra74971.2;Parent=Phyra74971;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 610582 610703 . - 0 ID=Phyra74971;Parent=Phyra74971;rank=1 scaffold_10 . exon 610582 610703 . - . ID=Phyra74971.1;Parent=Phyra74971;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 610948 611520 . - . ID=Phyra74972;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000187;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 610948 611520 . - . ID=Phyra74972;Parent=Phyra74972;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 610948 611520 . - 0 ID=Phyra74972;Parent=Phyra74972;rank=1 scaffold_10 . exon 610948 611520 . - . ID=Phyra74972.1;Parent=Phyra74972;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 612277 613476 . - . ID=Phyra74973;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000188;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 612277 613476 . - . ID=Phyra74973;Parent=Phyra74973;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 612277 613476 . - 0 ID=Phyra74973;Parent=Phyra74973;rank=1 scaffold_10 . exon 612277 613476 . - . ID=Phyra74973.1;Parent=Phyra74973;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 614671 616311 . + . ID=Phyra74974;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000189;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 614671 616311 . + . ID=Phyra74974;Parent=Phyra74974;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 614671 615147 . + 0 ID=Phyra74974;Parent=Phyra74974;rank=1 scaffold_10 . exon 614671 615147 . + . ID=Phyra74974.1;Parent=Phyra74974;constitutive=1;rank=1 scaffold_10 . CDS 615214 616311 . + 0 ID=Phyra74974;Parent=Phyra74974;rank=2 scaffold_10 . exon 615214 616311 . + . ID=Phyra74974.2;Parent=Phyra74974;constitutive=1;rank=2 scaffold_10 ensembl protein_coding_gene 616870 627304 . - . ID=Phyra74975;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000190;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 616870 627304 . - . ID=Phyra74975;Parent=Phyra74975;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 616870 616884 . - 0 ID=Phyra74975;Parent=Phyra74975;rank=9 scaffold_10 . exon 616870 616884 . - . ID=Phyra74975.9;Parent=Phyra74975;constitutive=1;rank=9 scaffold_10 . CDS 616931 616971 . - 0 ID=Phyra74975;Parent=Phyra74975;rank=8 scaffold_10 . exon 616931 616971 . - . ID=Phyra74975.8;Parent=Phyra74975;constitutive=1;ensembl_phase=1;rank=8 scaffold_10 . CDS 617053 618759 . - 0 ID=Phyra74975;Parent=Phyra74975;rank=7 scaffold_10 . exon 617053 618759 . - . ID=Phyra74975.7;Parent=Phyra74975;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_10 . CDS 618850 621690 . - 0 ID=Phyra74975;Parent=Phyra74975;rank=6 scaffold_10 . exon 618850 621690 . - . ID=Phyra74975.6;Parent=Phyra74975;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_10 . CDS 621880 621909 . - 0 ID=Phyra74975;Parent=Phyra74975;rank=5 scaffold_10 . exon 621880 621909 . - . ID=Phyra74975.5;Parent=Phyra74975;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_10 . CDS 621986 622586 . - 0 ID=Phyra74975;Parent=Phyra74975;rank=4 scaffold_10 . exon 621986 622586 . - . ID=Phyra74975.4;Parent=Phyra74975;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_10 . CDS 622617 626484 . - 0 ID=Phyra74975;Parent=Phyra74975;rank=3 scaffold_10 . exon 622617 626484 . - . ID=Phyra74975.3;Parent=Phyra74975;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 626548 626619 . - 0 ID=Phyra74975;Parent=Phyra74975;rank=2 scaffold_10 . CDS 626691 627304 . - 0 ID=Phyra74975;Parent=Phyra74975;rank=1 scaffold_10 . biological_region 627617 627618 0.999 - . logic_name=eponine scaffold_10 . biological_region 629785 629788 0.999 - . logic_name=eponine scaffold_10 . repeat_region 630351 630362 . ? . description=dust scaffold_10 . biological_region 630651 630655 0.999 - . logic_name=eponine scaffold_10 . biological_region 631453 631458 0.999 + . logic_name=eponine scaffold_10 . biological_region 631580 631583 0.999 - . logic_name=eponine scaffold_10 . biological_region 634978 634980 0.999 - . logic_name=eponine scaffold_10 . exon 626548 626619 . - . ID=Phyra74975.2;Parent=Phyra74975;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_10 . exon 626691 627304 . - . ID=Phyra74975.1;Parent=Phyra74975;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 628225 630045 . - . ID=Phyra74976;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000191;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 628225 630045 . - . ID=Phyra74976;Parent=Phyra74976;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 628225 630045 . - 0 ID=Phyra74976;Parent=Phyra74976;rank=1 scaffold_10 . exon 628225 630045 . - . ID=Phyra74976.1;Parent=Phyra74976;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 630524 631208 . + . ID=Phyra74977;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000192;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 630524 631208 . + . ID=Phyra74977;Parent=Phyra74977;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 630524 630614 . + 0 ID=Phyra74977;Parent=Phyra74977;rank=1 scaffold_10 . exon 630524 630614 . + . ID=Phyra74977.1;Parent=Phyra74977;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 630733 630792 . + 0 ID=Phyra74977;Parent=Phyra74977;rank=2 scaffold_10 . exon 630733 630792 . + . ID=Phyra74977.2;Parent=Phyra74977;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 630871 631208 . + 0 ID=Phyra74977;Parent=Phyra74977;rank=3 scaffold_10 . exon 630871 631208 . + . ID=Phyra74977.3;Parent=Phyra74977;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 ensembl protein_coding_gene 632047 633482 . + . ID=Phyra74978;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000193;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 632047 633482 . + . ID=Phyra74978;Parent=Phyra74978;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 632047 632134 . + 0 ID=Phyra74978;Parent=Phyra74978;rank=1 scaffold_10 . exon 632047 632134 . + . ID=Phyra74978.1;Parent=Phyra74978;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 632207 632584 . + 0 ID=Phyra74978;Parent=Phyra74978;rank=2 scaffold_10 . exon 632207 632584 . + . ID=Phyra74978.2;Parent=Phyra74978;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 632675 632785 . + 0 ID=Phyra74978;Parent=Phyra74978;rank=3 scaffold_10 . exon 632675 632785 . + . ID=Phyra74978.3;Parent=Phyra74978;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 632817 632938 . + 0 ID=Phyra74978;Parent=Phyra74978;rank=4 scaffold_10 . exon 632817 632938 . + . ID=Phyra74978.4;Parent=Phyra74978;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 633006 633170 . + 0 ID=Phyra74978;Parent=Phyra74978;rank=5 scaffold_10 . exon 633006 633170 . + . ID=Phyra74978.5;Parent=Phyra74978;constitutive=1;rank=5 scaffold_10 . CDS 633243 633307 . + 0 ID=Phyra74978;Parent=Phyra74978;rank=6 scaffold_10 . exon 633243 633307 . + . ID=Phyra74978.6;Parent=Phyra74978;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_10 . CDS 633377 633482 . + 0 ID=Phyra74978;Parent=Phyra74978;rank=7 scaffold_10 . exon 633377 633482 . + . ID=Phyra74978.7;Parent=Phyra74978;constitutive=1;ensembl_phase=2;rank=7 scaffold_10 . repeat_region 638382 638438 . ? . description=trf scaffold_10 . repeat_region 641984 642026 . ? . description=trf scaffold_10 . repeat_region 643155 643199 . ? . description=trf scaffold_10 . repeat_region 643157 643201 . ? . description=trf scaffold_10 . repeat_region 643178 643229 . ? . description=trf scaffold_10 ensembl protein_coding_gene 641653 643236 . + . ID=Phyra71265;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_10000018;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 641653 643236 . + . ID=Phyra71265;Parent=Phyra71265;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 641653 643236 . + 0 ID=Phyra71265;Parent=Phyra71265;rank=1 scaffold_10 . exon 641653 643236 . + . ID=Phyra71265.1;Parent=Phyra71265;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 638339 639646 . + . ID=Phyra74979;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000194;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 638339 639646 . + . ID=Phyra74979;Parent=Phyra74979;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 638339 639646 . + 0 ID=Phyra74979;Parent=Phyra74979;rank=1 scaffold_10 . exon 638339 639646 . + . ID=Phyra74979.1;Parent=Phyra74979;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 640348 641477 . - . ID=Phyra74980;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000195;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 640348 641477 . - . ID=Phyra74980;Parent=Phyra74980;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 640348 640449 . - 0 ID=Phyra74980;Parent=Phyra74980;rank=4 scaffold_10 . exon 640348 640449 . - . ID=Phyra74980.4;Parent=Phyra74980;constitutive=1;rank=4 scaffold_10 . CDS 640645 640815 . - 0 ID=Phyra74980;Parent=Phyra74980;rank=3 scaffold_10 . exon 640645 640815 . - . ID=Phyra74980.3;Parent=Phyra74980;constitutive=1;rank=3 scaffold_10 . CDS 640840 641130 . - 0 ID=Phyra74980;Parent=Phyra74980;rank=2 scaffold_10 . exon 640840 641130 . - . ID=Phyra74980.2;Parent=Phyra74980;constitutive=1;rank=2 scaffold_10 . CDS 641412 641477 . - 0 ID=Phyra74980;Parent=Phyra74980;rank=1 scaffold_10 . exon 641412 641477 . - . ID=Phyra74980.1;Parent=Phyra74980;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 643410 643916 . + . ID=Phyra74982;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000197;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 643410 643916 . + . ID=Phyra74982;Parent=Phyra74982;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 643410 643503 . + 0 ID=Phyra74982;Parent=Phyra74982;rank=1 scaffold_10 . exon 643410 643503 . + . ID=Phyra74982.1;Parent=Phyra74982;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 643570 643618 . + 0 ID=Phyra74982;Parent=Phyra74982;rank=2 scaffold_10 . exon 643570 643618 . + . ID=Phyra74982.2;Parent=Phyra74982;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_10 . CDS 643691 643916 . + 0 ID=Phyra74982;Parent=Phyra74982;rank=3 scaffold_10 . exon 643691 643916 . + . ID=Phyra74982.3;Parent=Phyra74982;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 ensembl protein_coding_gene 644105 645305 . - . ID=Phyra74983;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000198;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 644105 645305 . - . ID=Phyra74983;Parent=Phyra74983;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 644105 644463 . - 0 ID=Phyra74983;Parent=Phyra74983;rank=2 scaffold_10 . exon 644105 644463 . - . ID=Phyra74983.2;Parent=Phyra74983;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 645068 645305 . - 0 ID=Phyra74983;Parent=Phyra74983;rank=1 scaffold_10 . exon 645068 645305 . - . ID=Phyra74983.1;Parent=Phyra74983;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . repeat_region 646348 646355 . ? . description=dust scaffold_10 . repeat_region 646831 647365 . ? . description=dust scaffold_10 . biological_region 651110 651116 0.999 - . logic_name=eponine scaffold_10 . repeat_region 651493 652776 . ? . description=dust scaffold_10 . repeat_region 653814 654927 . ? . description=dust scaffold_10 ensembl protein_coding_gene 654934 655077 . + . ID=Phyra39004;biotype=protein_coding;external_name=gwEuk.10.92.1;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 654934 655077 . + . ID=Phyra39004;Parent=Phyra39004;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 654934 655077 . + 0 ID=Phyra39004;Parent=Phyra39004;rank=1 scaffold_10 . exon 654934 655077 . + . ID=Phyra39004.1;Parent=Phyra39004;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 649584 652842 . + . ID=Phyra74984;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000199;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 649584 652842 . + . ID=Phyra74984;Parent=Phyra74984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 649584 649655 . + 0 ID=Phyra74984;Parent=Phyra74984;rank=1 scaffold_10 . exon 649584 649655 . + . ID=Phyra74984.1;Parent=Phyra74984;constitutive=1;rank=1 scaffold_10 . CDS 649746 650744 . + 0 ID=Phyra74984;Parent=Phyra74984;rank=2 scaffold_10 . exon 649746 650744 . + . ID=Phyra74984.2;Parent=Phyra74984;constitutive=1;rank=2 scaffold_10 . CDS 650877 651395 . + 0 ID=Phyra74984;Parent=Phyra74984;rank=3 scaffold_10 . exon 650877 651395 . + . ID=Phyra74984.3;Parent=Phyra74984;constitutive=1;rank=3 scaffold_10 . CDS 652819 652842 . + 0 ID=Phyra74984;Parent=Phyra74984;rank=4 scaffold_10 . exon 652819 652842 . + . ID=Phyra74984.4;Parent=Phyra74984;constitutive=1;rank=4 scaffold_10 ensembl protein_coding_gene 655365 655908 . + . ID=Phyra74985;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000200;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 655365 655908 . + . ID=Phyra74985;Parent=Phyra74985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 655365 655414 . + 0 ID=Phyra74985;Parent=Phyra74985;rank=1 scaffold_10 . exon 655365 655414 . + . ID=Phyra74985.1;Parent=Phyra74985;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 655533 655908 . + 0 ID=Phyra74985;Parent=Phyra74985;rank=2 scaffold_10 . exon 655533 655908 . + . ID=Phyra74985.2;Parent=Phyra74985;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . repeat_region 659350 659375 . ? . description=trf scaffold_10 . repeat_region 660377 660442 . ? . description=trf scaffold_10 ensembl protein_coding_gene 658148 659821 . + . ID=Phyra74986;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000201;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 658148 659821 . + . ID=Phyra74986;Parent=Phyra74986;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 658148 659821 . + 0 ID=Phyra74986;Parent=Phyra74986;rank=1 scaffold_10 . exon 658148 659821 . + . ID=Phyra74986.1;Parent=Phyra74986;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 664498 665418 . + . ID=Phyra74987;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000202;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 664498 665418 . + . ID=Phyra74987;Parent=Phyra74987;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 664498 665418 . + 0 ID=Phyra74987;Parent=Phyra74987;rank=1 scaffold_10 . exon 664498 665418 . + . ID=Phyra74987.1;Parent=Phyra74987;constitutive=1;rank=1 scaffold_10 . biological_region 666593 666597 0.999 + . logic_name=eponine scaffold_10 . repeat_region 666595 666650 . ? . description=dust scaffold_10 . biological_region 666650 666654 0.999 - . logic_name=eponine scaffold_10 . biological_region 666667 666667 0.999 - . logic_name=eponine scaffold_10 . biological_region 666702 666708 0.999 - . logic_name=eponine scaffold_10 . repeat_region 668996 669045 . ? . description=dust scaffold_10 . biological_region 669125 669131 0.999 + . logic_name=eponine scaffold_10 . repeat_region 670785 674854 . ? . description=dust scaffold_10 . repeat_region 675860 697556 . ? . description=dust scaffold_10 ensembl protein_coding_gene 666151 670563 . - . ID=Phyra74988;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_10000203;logic_name=jgi_phyra1 scaffold_10 ensembl transcript 666151 670563 . - . ID=Phyra74988;Parent=Phyra74988;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_10 . CDS 666151 666276 . - 0 ID=Phyra74988;Parent=Phyra74988;rank=7 scaffold_10 . exon 666151 666276 . - . ID=Phyra74988.7;Parent=Phyra74988;constitutive=1;rank=7 scaffold_10 . CDS 666336 667291 . - 0 ID=Phyra74988;Parent=Phyra74988;rank=6 scaffold_10 . exon 666336 667291 . - . ID=Phyra74988.6;Parent=Phyra74988;constitutive=1;ensembl_phase=1;rank=6 scaffold_10 . CDS 667386 668476 . - 0 ID=Phyra74988;Parent=Phyra74988;rank=5 scaffold_10 . exon 667386 668476 . - . ID=Phyra74988.5;Parent=Phyra74988;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 668641 668663 . - 0 ID=Phyra74988;Parent=Phyra74988;rank=4 scaffold_10 . exon 668641 668663 . - . ID=Phyra74988.4;Parent=Phyra74988;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_10 . CDS 669064 669876 . - 0 ID=Phyra74988;Parent=Phyra74988;rank=3 scaffold_10 . exon 669064 669876 . - . ID=Phyra74988.3;Parent=Phyra74988;constitutive=1;rank=3 scaffold_10 . CDS 669966 670108 . - 0 ID=Phyra74988;Parent=Phyra74988;rank=2 scaffold_10 . exon 669966 670108 . - . ID=Phyra74988.2;Parent=Phyra74988;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 670305 670563 . - 0 ID=Phyra74988;Parent=Phyra74988;rank=1 scaffold_10 . exon 670305 670563 . - . ID=Phyra74988.1;Parent=Phyra74988;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . repeat_region 675860 697556 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_9 1 727265 scaffold_9 . repeat_region 128 232 . ? . description=trf scaffold_9 . repeat_region 302 357 . ? . description=trf scaffold_9 . repeat_region 412 456 . ? . description=trf scaffold_9 . repeat_region 417 456 . ? . description=dust scaffold_9 . repeat_region 612 632 . ? . description=dust scaffold_9 . repeat_region 1099 1126 . ? . description=trf scaffold_9 . repeat_region 1099 1126 . + . description=(CATTG)n scaffold_9 . repeat_region 1619 1736 . ? . description=trf scaffold_9 . repeat_region 2435 2462 . ? . description=dust scaffold_9 . repeat_region 2438 2462 . ? . description=trf scaffold_9 . repeat_region 2618 2656 . ? . description=trf scaffold_9 . repeat_region 2711 2766 . ? . description=trf scaffold_9 . repeat_region 2711 2776 . ? . description=trf scaffold_9 . repeat_region 2836 2940 . ? . description=trf scaffold_9 . repeat_region 3014 3084 . ? . description=trf scaffold_9 . biological_region 3755 3763 0.999 - . logic_name=eponine scaffold_9 . biological_region 3773 3780 0.999 + . logic_name=eponine scaffold_9 . biological_region 4286 4288 0.999 - . logic_name=eponine scaffold_9 . biological_region 4338 4350 0.999 + . logic_name=eponine scaffold_9 . biological_region 4404 4408 0.999 - . logic_name=eponine scaffold_9 . biological_region 4868 4870 0.999 - . logic_name=eponine scaffold_9 . repeat_region 9000 9007 . ? . description=dust scaffold_9 . repeat_region 9436 9446 . ? . description=dust scaffold_9 ensembl protein_coding_gene 9 597 . - . ID=Phyra74598;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000001;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 9 597 . - . ID=Phyra74598;Parent=Phyra74598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 9 597 . - 0 ID=Phyra74598;Parent=Phyra74598;rank=1 scaffold_9 . exon 9 597 . - . ID=Phyra74598.1;Parent=Phyra74598;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 2477 3307 . + . ID=Phyra74599;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000002;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 2477 3307 . + . ID=Phyra74599;Parent=Phyra74599;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 2477 3307 . + 0 ID=Phyra74599;Parent=Phyra74599;rank=1 scaffold_9 . exon 2477 3307 . + . ID=Phyra74599.1;Parent=Phyra74599;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 3665 5833 . + . ID=Phyra74600;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000003;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 3665 5833 . + . ID=Phyra74600;Parent=Phyra74600;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 3665 5833 . + 0 ID=Phyra74600;Parent=Phyra74600;rank=1 scaffold_9 . exon 3665 5833 . + . ID=Phyra74600.1;Parent=Phyra74600;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 6014 7787 . + . ID=Phyra74601;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000004;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 6014 7787 . + . ID=Phyra74601;Parent=Phyra74601;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 6014 6557 . + 0 ID=Phyra74601;Parent=Phyra74601;rank=1 scaffold_9 . exon 6014 6557 . + . ID=Phyra74601.1;Parent=Phyra74601;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 6636 6770 . + 0 ID=Phyra74601;Parent=Phyra74601;rank=2 scaffold_9 . exon 6636 6770 . + . ID=Phyra74601.2;Parent=Phyra74601;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 6793 7787 . + 0 ID=Phyra74601;Parent=Phyra74601;rank=3 scaffold_9 . exon 6793 7787 . + . ID=Phyra74601.3;Parent=Phyra74601;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 ensembl protein_coding_gene 11631 12632 . + . ID=Phyra74602;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000005;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 11631 12632 . + . ID=Phyra74602;Parent=Phyra74602;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 11631 12632 . + 0 ID=Phyra74602;Parent=Phyra74602;rank=1 scaffold_9 . exon 11631 12632 . + . ID=Phyra74602.1;Parent=Phyra74602;constitutive=1;rank=1 scaffold_9 . repeat_region 22349 22362 . ? . description=dust scaffold_9 . repeat_region 22481 23355 . ? . description=dust scaffold_9 . repeat_region 23358 23378 . ? . description=trf scaffold_9 . repeat_region 23358 23378 . ? . description=dust scaffold_9 . repeat_region 23406 23413 . ? . description=dust scaffold_9 . biological_region 23903 23906 0.999 - . logic_name=eponine scaffold_9 . repeat_region 26590 26620 . ? . description=dust scaffold_9 . biological_region 26886 26890 0.999 + . logic_name=eponine scaffold_9 . biological_region 26989 26993 0.999 - . logic_name=eponine scaffold_9 . biological_region 27200 27200 0.999 - . logic_name=eponine scaffold_9 . repeat_region 29403 29422 . ? . description=dust scaffold_9 . repeat_region 29796 29803 . ? . description=dust scaffold_9 ensembl protein_coding_gene 24546 25656 . + . ID=Phyra74603;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000006;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 24546 25656 . + . ID=Phyra74603;Parent=Phyra74603;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 24546 24807 . + 0 ID=Phyra74603;Parent=Phyra74603;rank=1 scaffold_9 . exon 24546 24807 . + . ID=Phyra74603.1;Parent=Phyra74603;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 24866 24997 . + 0 ID=Phyra74603;Parent=Phyra74603;rank=2 scaffold_9 . exon 24866 24997 . + . ID=Phyra74603.2;Parent=Phyra74603;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 25050 25057 . + 0 ID=Phyra74603;Parent=Phyra74603;rank=3 scaffold_9 . exon 25050 25057 . + . ID=Phyra74603.3;Parent=Phyra74603;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 25264 25656 . + 0 ID=Phyra74603;Parent=Phyra74603;rank=4 scaffold_9 . exon 25264 25656 . + . ID=Phyra74603.4;Parent=Phyra74603;constitutive=1;rank=4 scaffold_9 ensembl protein_coding_gene 32241 32897 . + . ID=Phyra54327;biotype=protein_coding;external_name=gwEuk.9.152.1;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 32241 32897 . + . ID=Phyra54327;Parent=Phyra54327;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 32241 32897 . + 0 ID=Phyra54327;Parent=Phyra54327;rank=1 scaffold_9 . exon 32241 32897 . + . ID=Phyra54327.1;Parent=Phyra54327;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 38298 38662 . - . ID=Phyra54331;biotype=protein_coding;external_name=gwEuk.9.156.1;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 38298 38662 . - . ID=Phyra54331;Parent=Phyra54331;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 38298 38335 . - 0 ID=Phyra54331;Parent=Phyra54331;rank=2 scaffold_9 . exon 38298 38335 . - . ID=Phyra54331.2;Parent=Phyra54331;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 38419 38662 . - 0 ID=Phyra54331;Parent=Phyra54331;rank=1 scaffold_9 . exon 38419 38662 . - . ID=Phyra54331.1;Parent=Phyra54331;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 35332 35943 . + . ID=Phyra74605;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000008;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 35332 35943 . + . ID=Phyra74605;Parent=Phyra74605;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 35332 35943 . + 0 ID=Phyra74605;Parent=Phyra74605;rank=1 scaffold_9 . exon 35332 35943 . + . ID=Phyra74605.1;Parent=Phyra74605;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 36200 38041 . - . ID=Phyra74606;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000009;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 36200 38041 . - . ID=Phyra74606;Parent=Phyra74606;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 36200 37567 . - 0 ID=Phyra74606;Parent=Phyra74606;rank=2 scaffold_9 . exon 36200 37567 . - . ID=Phyra74606.2;Parent=Phyra74606;constitutive=1;rank=2 scaffold_9 . CDS 37709 38041 . - 0 ID=Phyra74606;Parent=Phyra74606;rank=1 scaffold_9 . exon 37709 38041 . - . ID=Phyra74606.1;Parent=Phyra74606;constitutive=1;rank=1 scaffold_9 . repeat_region 41205 41215 . ? . description=dust scaffold_9 . repeat_region 42897 42912 . ? . description=dust scaffold_9 . repeat_region 45848 45858 . ? . description=dust scaffold_9 . biological_region 46056 46060 0.999 + . logic_name=eponine scaffold_9 . biological_region 46430 46434 0.999 - . logic_name=eponine scaffold_9 . biological_region 46804 46806 0.999 + . logic_name=eponine scaffold_9 . repeat_region 47466 47503 . ? . description=dust scaffold_9 . biological_region 47574 47575 0.999 - . logic_name=eponine scaffold_9 . biological_region 48070 48073 0.999 + . logic_name=eponine scaffold_9 . biological_region 48639 48644 0.999 + . logic_name=eponine scaffold_9 . biological_region 48707 48713 0.999 + . logic_name=eponine scaffold_9 . biological_region 48742 48745 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 46671 47774 . - . ID=Phyra74608;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000011;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 46671 47774 . - . ID=Phyra74608;Parent=Phyra74608;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 46671 47774 . - 0 ID=Phyra74608;Parent=Phyra74608;rank=1 scaffold_9 . exon 46671 47774 . - . ID=Phyra74608.1;Parent=Phyra74608;constitutive=1;rank=1 scaffold_9 . repeat_region 51318 51362 . ? . description=trf scaffold_9 . repeat_region 51412 51452 . ? . description=trf scaffold_9 ensembl protein_coding_gene 53017 53352 . + . ID=Phyra54338;biotype=protein_coding;external_name=gwEuk.9.163.1;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 53017 53352 . + . ID=Phyra54338;Parent=Phyra54338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 53017 53352 . + 0 ID=Phyra54338;Parent=Phyra54338;rank=1 scaffold_9 . exon 53017 53352 . + . ID=Phyra54338.1;Parent=Phyra54338;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 58253 58444 . - . ID=Phyra54347;biotype=protein_coding;external_name=gwEuk.9.172.1;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 58253 58444 . - . ID=Phyra54347;Parent=Phyra54347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 58253 58444 . - 0 ID=Phyra54347;Parent=Phyra54347;rank=1 scaffold_9 . exon 58253 58444 . - . ID=Phyra54347.1;Parent=Phyra54347;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 53886 54777 . - . ID=Phyra71223;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000002;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 53886 54777 . - . ID=Phyra71223;Parent=Phyra71223;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 53886 53975 . - 0 ID=Phyra71223;Parent=Phyra71223;rank=6 scaffold_9 . exon 53886 53975 . - . ID=Phyra71223.6;Parent=Phyra71223;constitutive=1;rank=6 scaffold_9 . CDS 54037 54093 . - 0 ID=Phyra71223;Parent=Phyra71223;rank=5 scaffold_9 . exon 54037 54093 . - . ID=Phyra71223.5;Parent=Phyra71223;constitutive=1;rank=5 scaffold_9 . CDS 54174 54221 . - 0 ID=Phyra71223;Parent=Phyra71223;rank=4 scaffold_9 . exon 54174 54221 . - . ID=Phyra71223.4;Parent=Phyra71223;constitutive=1;rank=4 scaffold_9 . CDS 54316 54362 . - 0 ID=Phyra71223;Parent=Phyra71223;rank=3 scaffold_9 . exon 54316 54362 . - . ID=Phyra71223.3;Parent=Phyra71223;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 54438 54682 . - 0 ID=Phyra71223;Parent=Phyra71223;rank=2 scaffold_9 . exon 54438 54682 . - . ID=Phyra71223.2;Parent=Phyra71223;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 54719 54777 . - 0 ID=Phyra71223;Parent=Phyra71223;rank=1 scaffold_9 . exon 54719 54777 . - . ID=Phyra71223.1;Parent=Phyra71223;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 50630 52661 . + . ID=Phyra74609;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000012;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 50630 52661 . + . ID=Phyra74609;Parent=Phyra74609;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 50630 51048 . + 0 ID=Phyra74609;Parent=Phyra74609;rank=1 scaffold_9 . exon 50630 51048 . + . ID=Phyra74609.1;Parent=Phyra74609;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 51129 51519 . + 0 ID=Phyra74609;Parent=Phyra74609;rank=2 scaffold_9 . exon 51129 51519 . + . ID=Phyra74609.2;Parent=Phyra74609;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 52065 52115 . + 0 ID=Phyra74609;Parent=Phyra74609;rank=3 scaffold_9 . exon 52065 52115 . + . ID=Phyra74609.3;Parent=Phyra74609;constitutive=1;rank=3 scaffold_9 . CDS 52175 52370 . + 0 ID=Phyra74609;Parent=Phyra74609;rank=4 scaffold_9 . exon 52175 52370 . + . ID=Phyra74609.4;Parent=Phyra74609;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_9 . CDS 52441 52661 . + 0 ID=Phyra74609;Parent=Phyra74609;rank=5 scaffold_9 . exon 52441 52661 . + . ID=Phyra74609.5;Parent=Phyra74609;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 ensembl protein_coding_gene 58672 60753 . + . ID=Phyra74613;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000016;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 58672 60753 . + . ID=Phyra74613;Parent=Phyra74613;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 58672 60753 . + 0 ID=Phyra74613;Parent=Phyra74613;rank=1 scaffold_9 . exon 58672 60753 . + . ID=Phyra74613.1;Parent=Phyra74613;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 55804 57966 . + . ID=Phyra93851;biotype=protein_coding;external_name=C_scaffold_9000005;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 55804 57966 . + . ID=Phyra93851;Parent=Phyra93851;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 55804 55876 . + 0 ID=Phyra93851;Parent=Phyra93851;rank=1 scaffold_9 . exon 55804 55876 . + . ID=Phyra93851.1;Parent=Phyra93851;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 55925 56202 . + 0 ID=Phyra93851;Parent=Phyra93851;rank=2 scaffold_9 . exon 55925 56202 . + . ID=Phyra93851.2;Parent=Phyra93851;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 56359 56817 . + 0 ID=Phyra93851;Parent=Phyra93851;rank=3 scaffold_9 . exon 56359 56817 . + . ID=Phyra93851.3;Parent=Phyra93851;constitutive=1;rank=3 scaffold_9 . CDS 57050 57115 . + 0 ID=Phyra93851;Parent=Phyra93851;rank=4 scaffold_9 . exon 57050 57115 . + . ID=Phyra93851.4;Parent=Phyra93851;constitutive=1;rank=4 scaffold_9 . CDS 57301 57966 . + 0 ID=Phyra93851;Parent=Phyra93851;rank=5 scaffold_9 . exon 57301 57966 . + . ID=Phyra93851.5;Parent=Phyra93851;constitutive=1;rank=5 scaffold_9 . biological_region 60191 60193 0.999 - . logic_name=eponine scaffold_9 . repeat_region 68530 68538 . ? . description=dust scaffold_9 ensembl protein_coding_gene 62124 63101 . + . ID=Phyra71224;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000003;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 62124 63101 . + . ID=Phyra71224;Parent=Phyra71224;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 62124 63101 . + 0 ID=Phyra71224;Parent=Phyra71224;rank=1 scaffold_9 . exon 62124 63101 . + . ID=Phyra71224.1;Parent=Phyra71224;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 64144 65094 . + . ID=Phyra71225;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000004;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 64144 65094 . + . ID=Phyra71225;Parent=Phyra71225;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 64144 65094 . + 0 ID=Phyra71225;Parent=Phyra71225;rank=1 scaffold_9 . exon 64144 65094 . + . ID=Phyra71225.1;Parent=Phyra71225;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 65328 65741 . - . ID=Phyra74616;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000019;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 65328 65741 . - . ID=Phyra74616;Parent=Phyra74616;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 65328 65530 . - 0 ID=Phyra74616;Parent=Phyra74616;rank=2 scaffold_9 . exon 65328 65530 . - . ID=Phyra74616.2;Parent=Phyra74616;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 65588 65741 . - 0 ID=Phyra74616;Parent=Phyra74616;rank=1 scaffold_9 . exon 65588 65741 . - . ID=Phyra74616.1;Parent=Phyra74616;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 68932 69945 . - . ID=Phyra74617;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000020;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 68932 69945 . - . ID=Phyra74617;Parent=Phyra74617;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 68932 69945 . - 0 ID=Phyra74617;Parent=Phyra74617;rank=1 scaffold_9 . exon 68932 69945 . - . ID=Phyra74617.1;Parent=Phyra74617;constitutive=1;rank=1 scaffold_9 . repeat_region 69854 69900 . ? . description=trf scaffold_9 . repeat_region 72322 72349 . ? . description=trf scaffold_9 . repeat_region 72478 72501 . ? . description=trf scaffold_9 . repeat_region 74449 74579 . ? . description=trf scaffold_9 ensembl protein_coding_gene 75248 76462 . - . ID=Phyra74618;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000021;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 75248 76462 . - . ID=Phyra74618;Parent=Phyra74618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 75248 75258 . - 0 ID=Phyra74618;Parent=Phyra74618;rank=4 scaffold_9 . exon 75248 75258 . - . ID=Phyra74618.4;Parent=Phyra74618;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 75310 75653 . - 0 ID=Phyra74618;Parent=Phyra74618;rank=3 scaffold_9 . exon 75310 75653 . - . ID=Phyra74618.3;Parent=Phyra74618;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 75755 75865 . - 0 ID=Phyra74618;Parent=Phyra74618;rank=2 scaffold_9 . exon 75755 75865 . - . ID=Phyra74618.2;Parent=Phyra74618;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_9 . CDS 75936 76462 . - 0 ID=Phyra74618;Parent=Phyra74618;rank=1 scaffold_9 . exon 75936 76462 . - . ID=Phyra74618.1;Parent=Phyra74618;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 77918 78775 . - . ID=Phyra74619;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000022;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 77918 78775 . - . ID=Phyra74619;Parent=Phyra74619;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 77918 78775 . - 0 ID=Phyra74619;Parent=Phyra74619;rank=1 scaffold_9 . exon 77918 78775 . - . ID=Phyra74619.1;Parent=Phyra74619;constitutive=1;rank=1 scaffold_9 . biological_region 80226 80226 0.999 + . logic_name=eponine scaffold_9 . repeat_region 80383 80433 . ? . description=dust scaffold_9 . repeat_region 80679 80728 . ? . description=dust scaffold_9 . repeat_region 84545 84594 . ? . description=dust scaffold_9 . repeat_region 85105 85155 . ? . description=dust scaffold_9 . repeat_region 85882 85931 . ? . description=dust scaffold_9 . repeat_region 87433 89789 . ? . description=dust scaffold_9 ensembl protein_coding_gene 84636 85001 . + . ID=Phyra54369;biotype=protein_coding;external_name=gwEuk.9.194.1;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 84636 85001 . + . ID=Phyra54369;Parent=Phyra54369;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 84636 85001 . + 0 ID=Phyra54369;Parent=Phyra54369;rank=1 scaffold_9 . exon 84636 85001 . + . ID=Phyra54369.1;Parent=Phyra54369;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 81651 82649 . - . ID=Phyra74620;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000023;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 81651 82649 . - . ID=Phyra74620;Parent=Phyra74620;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 81651 82649 . - 0 ID=Phyra74620;Parent=Phyra74620;rank=1 scaffold_9 . exon 81651 82649 . - . ID=Phyra74620.1;Parent=Phyra74620;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 85538 87314 . + . ID=Phyra74622;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000025;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 85538 87314 . + . ID=Phyra74622;Parent=Phyra74622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 85538 85876 . + 0 ID=Phyra74622;Parent=Phyra74622;rank=1 scaffold_9 . exon 85538 85876 . + . ID=Phyra74622.1;Parent=Phyra74622;constitutive=1;rank=1 scaffold_9 . CDS 86421 87314 . + 0 ID=Phyra74622;Parent=Phyra74622;rank=2 scaffold_9 . exon 86421 87314 . + . ID=Phyra74622.2;Parent=Phyra74622;constitutive=1;rank=2 scaffold_9 . repeat_region 91656 91967 . - . description=Polinton-1_PI scaffold_9 . repeat_region 95440 95487 . ? . description=trf scaffold_9 . repeat_region 96404 96427 . ? . description=trf scaffold_9 . repeat_region 99627 99674 . ? . description=trf scaffold_9 ensembl protein_coding_gene 90852 91820 . - . ID=Phyra54371;biotype=protein_coding;external_name=gwEuk.9.196.1;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 90852 91820 . - . ID=Phyra54371;Parent=Phyra54371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 90852 91820 . - 0 ID=Phyra54371;Parent=Phyra54371;rank=1 scaffold_9 . exon 90852 91820 . - . ID=Phyra54371.1;Parent=Phyra54371;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 92463 93665 . - . ID=Phyra74624;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000027;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 92463 93665 . - . ID=Phyra74624;Parent=Phyra74624;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 92463 93665 . - 0 ID=Phyra74624;Parent=Phyra74624;rank=1 scaffold_9 . exon 92463 93665 . - . ID=Phyra74624.1;Parent=Phyra74624;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 94769 95278 . - . ID=Phyra74625;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000028;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 94769 95278 . - . ID=Phyra74625;Parent=Phyra74625;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 94769 95278 . - 0 ID=Phyra74625;Parent=Phyra74625;rank=1 scaffold_9 . exon 94769 95278 . - . ID=Phyra74625.1;Parent=Phyra74625;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 97612 99459 . - . ID=Phyra74626;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000029;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 97612 99459 . - . ID=Phyra74626;Parent=Phyra74626;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 97612 99459 . - 0 ID=Phyra74626;Parent=Phyra74626;rank=1 scaffold_9 . exon 97612 99459 . - . ID=Phyra74626.1;Parent=Phyra74626;constitutive=1;rank=1 scaffold_9 . biological_region 100903 100903 0.999 + . logic_name=eponine scaffold_9 . repeat_region 102003 102011 . ? . description=dust scaffold_9 . repeat_region 102680 102687 . ? . description=dust scaffold_9 . repeat_region 102702 102715 . ? . description=dust scaffold_9 . repeat_region 103215 103227 . ? . description=dust scaffold_9 . repeat_region 108393 108438 . ? . description=dust scaffold_9 . repeat_region 109073 109086 . ? . description=dust scaffold_9 . repeat_region 109132 109182 . ? . description=dust scaffold_9 . repeat_region 109208 110447 . - . description=GypsyPi-1c_I-int scaffold_9 ensembl protein_coding_gene 108621 109675 . - . ID=Phyra74627;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000030;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 108621 109675 . - . ID=Phyra74627;Parent=Phyra74627;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 108621 108697 . - 0 ID=Phyra74627;Parent=Phyra74627;rank=4 scaffold_9 . exon 108621 108697 . - . ID=Phyra74627.4;Parent=Phyra74627;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 108786 108864 . - 0 ID=Phyra74627;Parent=Phyra74627;rank=3 scaffold_9 . exon 108786 108864 . - . ID=Phyra74627.3;Parent=Phyra74627;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 109247 109368 . - 0 ID=Phyra74627;Parent=Phyra74627;rank=2 scaffold_9 . exon 109247 109368 . - . ID=Phyra74627.2;Parent=Phyra74627;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 109444 109675 . - 0 ID=Phyra74627;Parent=Phyra74627;rank=1 scaffold_9 . exon 109444 109675 . - . ID=Phyra74627.1;Parent=Phyra74627;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 111702 112385 . - . ID=Phyra74628;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000031;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 111702 112385 . - . ID=Phyra74628;Parent=Phyra74628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 111702 112385 . - 0 ID=Phyra74628;Parent=Phyra74628;rank=1 scaffold_9 . exon 111702 112385 . - . ID=Phyra74628.1;Parent=Phyra74628;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 117327 117939 . + . ID=Phyra74629;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000032;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 117327 117939 . + . ID=Phyra74629;Parent=Phyra74629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 117327 117334 . + 0 ID=Phyra74629;Parent=Phyra74629;rank=1 scaffold_9 . exon 117327 117334 . + . ID=Phyra74629.1;Parent=Phyra74629;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 117402 117939 . + 0 ID=Phyra74629;Parent=Phyra74629;rank=2 scaffold_9 . exon 117402 117939 . + . ID=Phyra74629.2;Parent=Phyra74629;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 ensembl protein_coding_gene 119136 120167 . - . ID=Phyra74630;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000033;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 119136 120167 . - . ID=Phyra74630;Parent=Phyra74630;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 119136 120167 . - 0 ID=Phyra74630;Parent=Phyra74630;rank=1 scaffold_9 . exon 119136 120167 . - . ID=Phyra74630.1;Parent=Phyra74630;constitutive=1;rank=1 scaffold_9 . repeat_region 120037 120122 . ? . description=trf scaffold_9 . repeat_region 120506 120564 . ? . description=trf scaffold_9 . repeat_region 121316 121380 . ? . description=trf scaffold_9 . repeat_region 122208 122218 . ? . description=dust scaffold_9 . repeat_region 122809 122816 . ? . description=dust scaffold_9 . biological_region 123171 123172 0.999 + . logic_name=eponine scaffold_9 . biological_region 123610 123613 0.999 + . logic_name=eponine scaffold_9 . biological_region 124395 124400 0.999 + . logic_name=eponine scaffold_9 . biological_region 126328 126330 0.999 + . logic_name=eponine scaffold_9 . biological_region 126503 126503 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 123000 132040 . - . ID=Phyra74631;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000034;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 123000 132040 . - . ID=Phyra74631;Parent=Phyra74631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 123000 123499 . - 0 ID=Phyra74631;Parent=Phyra74631;rank=2 scaffold_9 . exon 123000 123499 . - . ID=Phyra74631.2;Parent=Phyra74631;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 123529 132040 . - 0 ID=Phyra74631;Parent=Phyra74631;rank=1 scaffold_9 . exon 123529 132040 . - . ID=Phyra74631.1;Parent=Phyra74631;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . repeat_region 132249 162280 . ? . description=dust scaffold_9 . repeat_region 132249 162280 . ? . description=dust scaffold_9 . repeat_region 166976 167128 . ? . description=trf scaffold_9 . repeat_region 166976 167135 . ? . description=trf scaffold_9 . biological_region 167727 167727 0.999 + . logic_name=eponine scaffold_9 . repeat_region 169030 169151 . ? . description=dust scaffold_9 . repeat_region 169258 169265 . ? . description=dust scaffold_9 ensembl protein_coding_gene 168128 168475 . - . ID=Phyra71227;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000006;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 168128 168475 . - . ID=Phyra71227;Parent=Phyra71227;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 168128 168475 . - 0 ID=Phyra71227;Parent=Phyra71227;rank=1 scaffold_9 . exon 168128 168475 . - . ID=Phyra71227.1;Parent=Phyra71227;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 162639 163688 . + . ID=Phyra74632;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000035;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 162639 163688 . + . ID=Phyra74632;Parent=Phyra74632;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 162639 163688 . + 0 ID=Phyra74632;Parent=Phyra74632;rank=1 scaffold_9 . exon 162639 163688 . + . ID=Phyra74632.1;Parent=Phyra74632;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 164315 166613 . + . ID=Phyra93854;biotype=protein_coding;external_name=C_scaffold_9000008;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 164315 166613 . + . ID=Phyra93854;Parent=Phyra93854;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 164315 164639 . + 0 ID=Phyra93854;Parent=Phyra93854;rank=1 scaffold_9 . exon 164315 164639 . + . ID=Phyra93854.1;Parent=Phyra93854;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 164754 164920 . + 0 ID=Phyra93854;Parent=Phyra93854;rank=2 scaffold_9 . exon 164754 164920 . + . ID=Phyra93854.2;Parent=Phyra93854;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 165485 166358 . + 0 ID=Phyra93854;Parent=Phyra93854;rank=3 scaffold_9 . exon 165485 166358 . + . ID=Phyra93854.3;Parent=Phyra93854;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 166597 166613 . + 0 ID=Phyra93854;Parent=Phyra93854;rank=4 scaffold_9 . exon 166597 166613 . + . ID=Phyra93854.4;Parent=Phyra93854;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 ensembl protein_coding_gene 173095 173400 . + . ID=Phyra54392;biotype=protein_coding;external_name=gwEuk.9.217.1;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 173095 173400 . + . ID=Phyra54392;Parent=Phyra54392;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 173095 173400 . + 0 ID=Phyra54392;Parent=Phyra54392;rank=1 scaffold_9 . exon 173095 173400 . + . ID=Phyra54392.1;Parent=Phyra54392;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 174101 175150 . - . ID=Phyra71229;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000008;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 174101 175150 . - . ID=Phyra71229;Parent=Phyra71229;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 174101 174527 . - 0 ID=Phyra71229;Parent=Phyra71229;rank=2 scaffold_9 . exon 174101 174527 . - . ID=Phyra71229.2;Parent=Phyra71229;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 174606 175150 . - 0 ID=Phyra71229;Parent=Phyra71229;rank=1 scaffold_9 . exon 174606 175150 . - . ID=Phyra71229.1;Parent=Phyra71229;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 169570 170167 . - . ID=Phyra74635;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000038;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 169570 170167 . - . ID=Phyra74635;Parent=Phyra74635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 169570 169796 . - 0 ID=Phyra74635;Parent=Phyra74635;rank=3 scaffold_9 . exon 169570 169796 . - . ID=Phyra74635.3;Parent=Phyra74635;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 169881 169979 . - 0 ID=Phyra74635;Parent=Phyra74635;rank=2 scaffold_9 . exon 169881 169979 . - . ID=Phyra74635.2;Parent=Phyra74635;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 170056 170167 . - 0 ID=Phyra74635;Parent=Phyra74635;rank=1 scaffold_9 . exon 170056 170167 . - . ID=Phyra74635.1;Parent=Phyra74635;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 170791 171770 . - . ID=Phyra74636;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000039;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 170791 171770 . - . ID=Phyra74636;Parent=Phyra74636;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 170791 171679 . - 0 ID=Phyra74636;Parent=Phyra74636;rank=2 scaffold_9 . exon 170791 171679 . - . ID=Phyra74636.2;Parent=Phyra74636;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 171757 171770 . - 0 ID=Phyra74636;Parent=Phyra74636;rank=1 scaffold_9 . exon 171757 171770 . - . ID=Phyra74636.1;Parent=Phyra74636;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 175347 177548 . + . ID=Phyra74639;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000042;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 175347 177548 . + . ID=Phyra74639;Parent=Phyra74639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 175347 175409 . + 0 ID=Phyra74639;Parent=Phyra74639;rank=1 scaffold_9 . exon 175347 175409 . + . ID=Phyra74639.1;Parent=Phyra74639;constitutive=1;rank=1 scaffold_9 . CDS 175520 175849 . + 0 ID=Phyra74639;Parent=Phyra74639;rank=2 scaffold_9 . exon 175520 175849 . + . ID=Phyra74639.2;Parent=Phyra74639;constitutive=1;rank=2 scaffold_9 . CDS 175926 176426 . + 0 ID=Phyra74639;Parent=Phyra74639;rank=3 scaffold_9 . exon 175926 176426 . + . ID=Phyra74639.3;Parent=Phyra74639;constitutive=1;rank=3 scaffold_9 . CDS 176488 176553 . + 0 ID=Phyra74639;Parent=Phyra74639;rank=4 scaffold_9 . exon 176488 176553 . + . ID=Phyra74639.4;Parent=Phyra74639;constitutive=1;rank=4 scaffold_9 . CDS 176796 177548 . + 0 ID=Phyra74639;Parent=Phyra74639;rank=5 scaffold_9 . exon 176796 177548 . + . ID=Phyra74639.5;Parent=Phyra74639;constitutive=1;rank=5 scaffold_9 . repeat_region 179148 190015 . ? . description=dust scaffold_9 . repeat_region 193407 193586 . ? . description=trf scaffold_9 . repeat_region 193407 193607 . ? . description=trf scaffold_9 . repeat_region 193776 193826 . ? . description=trf scaffold_9 . repeat_region 193776 193827 . ? . description=trf scaffold_9 . repeat_region 193857 193879 . ? . description=trf scaffold_9 . biological_region 195712 195718 0.999 - . logic_name=eponine scaffold_9 . biological_region 195774 195776 0.999 - . logic_name=eponine scaffold_9 . biological_region 198265 198268 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 193068 193970 . + . ID=Phyra74640;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000043;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 193068 193970 . + . ID=Phyra74640;Parent=Phyra74640;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 193068 193156 . + 0 ID=Phyra74640;Parent=Phyra74640;rank=1 scaffold_9 . exon 193068 193156 . + . ID=Phyra74640.1;Parent=Phyra74640;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 193214 193970 . + 0 ID=Phyra74640;Parent=Phyra74640;rank=2 scaffold_9 . exon 193214 193970 . + . ID=Phyra74640.2;Parent=Phyra74640;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 ensembl protein_coding_gene 194216 195343 . - . ID=Phyra74641;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000044;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 194216 195343 . - . ID=Phyra74641;Parent=Phyra74641;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 194216 195343 . - 0 ID=Phyra74641;Parent=Phyra74641;rank=1 scaffold_9 . exon 194216 195343 . - . ID=Phyra74641.1;Parent=Phyra74641;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 195501 196100 . + . ID=Phyra74642;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000045;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 195501 196100 . + . ID=Phyra74642;Parent=Phyra74642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 195501 196100 . + 0 ID=Phyra74642;Parent=Phyra74642;rank=1 scaffold_9 . exon 195501 196100 . + . ID=Phyra74642.1;Parent=Phyra74642;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 197730 198484 . + . ID=Phyra74643;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000046;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 197730 198484 . + . ID=Phyra74643;Parent=Phyra74643;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 197730 197759 . + 0 ID=Phyra74643;Parent=Phyra74643;rank=1 scaffold_9 . exon 197730 197759 . + . ID=Phyra74643.1;Parent=Phyra74643;constitutive=1;rank=1 scaffold_9 . CDS 197875 197961 . + 0 ID=Phyra74643;Parent=Phyra74643;rank=2 scaffold_9 . exon 197875 197961 . + . ID=Phyra74643.2;Parent=Phyra74643;constitutive=1;rank=2 scaffold_9 . CDS 198039 198313 . + 0 ID=Phyra74643;Parent=Phyra74643;rank=3 scaffold_9 . exon 198039 198313 . + . ID=Phyra74643.3;Parent=Phyra74643;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_9 . CDS 198448 198484 . + 0 ID=Phyra74643;Parent=Phyra74643;rank=4 scaffold_9 . exon 198448 198484 . + . ID=Phyra74643.4;Parent=Phyra74643;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 ensembl protein_coding_gene 198930 200363 . - . ID=Phyra74644;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000047;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 198930 200363 . - . ID=Phyra74644;Parent=Phyra74644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 198930 200363 . - 0 ID=Phyra74644;Parent=Phyra74644;rank=1 scaffold_9 . exon 198930 200363 . - . ID=Phyra74644.1;Parent=Phyra74644;constitutive=1;rank=1 scaffold_9 . repeat_region 202175 202183 . ? . description=dust scaffold_9 ensembl protein_coding_gene 202501 204079 . + . ID=Phyra74645;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000048;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 202501 204079 . + . ID=Phyra74645;Parent=Phyra74645;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 202501 203075 . + 0 ID=Phyra74645;Parent=Phyra74645;rank=1 scaffold_9 . exon 202501 203075 . + . ID=Phyra74645.1;Parent=Phyra74645;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 203095 204079 . + 0 ID=Phyra74645;Parent=Phyra74645;rank=2 scaffold_9 . exon 203095 204079 . + . ID=Phyra74645.2;Parent=Phyra74645;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 ensembl protein_coding_gene 205269 206294 . - . ID=Phyra74646;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000049;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 205269 206294 . - . ID=Phyra74646;Parent=Phyra74646;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 205269 205276 . - 0 ID=Phyra74646;Parent=Phyra74646;rank=6 scaffold_9 . exon 205269 205276 . - . ID=Phyra74646.6;Parent=Phyra74646;constitutive=1;ensembl_phase=1;rank=6 scaffold_9 . CDS 205336 205383 . - 0 ID=Phyra74646;Parent=Phyra74646;rank=5 scaffold_9 . exon 205336 205383 . - . ID=Phyra74646.5;Parent=Phyra74646;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_9 . CDS 205452 205512 . - 0 ID=Phyra74646;Parent=Phyra74646;rank=4 scaffold_9 . exon 205452 205512 . - . ID=Phyra74646.4;Parent=Phyra74646;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_9 . CDS 205593 205687 . - 0 ID=Phyra74646;Parent=Phyra74646;rank=3 scaffold_9 . exon 205593 205687 . - . ID=Phyra74646.3;Parent=Phyra74646;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 205759 205837 . - 0 ID=Phyra74646;Parent=Phyra74646;rank=2 scaffold_9 . exon 205759 205837 . - . ID=Phyra74646.2;Parent=Phyra74646;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 205902 206294 . - 0 ID=Phyra74646;Parent=Phyra74646;rank=1 scaffold_9 . exon 205902 206294 . - . ID=Phyra74646.1;Parent=Phyra74646;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 206535 207945 . + . ID=Phyra74647;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000050;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 206535 207945 . + . ID=Phyra74647;Parent=Phyra74647;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 206535 207074 . + 0 ID=Phyra74647;Parent=Phyra74647;rank=1 scaffold_9 . exon 206535 207074 . + . ID=Phyra74647.1;Parent=Phyra74647;constitutive=1;rank=1 scaffold_9 . CDS 207149 207242 . + 0 ID=Phyra74647;Parent=Phyra74647;rank=2 scaffold_9 . exon 207149 207242 . + . ID=Phyra74647.2;Parent=Phyra74647;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 207319 207728 . + 0 ID=Phyra74647;Parent=Phyra74647;rank=3 scaffold_9 . exon 207319 207728 . + . ID=Phyra74647.3;Parent=Phyra74647;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 207808 207945 . + 0 ID=Phyra74647;Parent=Phyra74647;rank=4 scaffold_9 . exon 207808 207945 . + . ID=Phyra74647.4;Parent=Phyra74647;constitutive=1;rank=4 scaffold_9 . repeat_region 209363 209462 . ? . description=trf scaffold_9 . repeat_region 209574 209601 . ? . description=trf scaffold_9 . biological_region 210962 210964 0.999 + . logic_name=eponine scaffold_9 . biological_region 211352 211357 0.999 + . logic_name=eponine scaffold_9 . biological_region 211375 211375 0.999 - . logic_name=eponine scaffold_9 . biological_region 211377 211378 0.999 + . logic_name=eponine scaffold_9 . biological_region 211393 211398 0.999 - . logic_name=eponine scaffold_9 . biological_region 211583 211585 0.999 + . logic_name=eponine scaffold_9 . biological_region 211622 211627 0.999 + . logic_name=eponine scaffold_9 . biological_region 211890 211896 0.999 - . logic_name=eponine scaffold_9 . repeat_region 212223 212244 . ? . description=trf scaffold_9 ensembl protein_coding_gene 209256 209966 . - . ID=Phyra74648;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000051;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 209256 209966 . - . ID=Phyra74648;Parent=Phyra74648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 209256 209966 . - 0 ID=Phyra74648;Parent=Phyra74648;rank=1 scaffold_9 . exon 209256 209966 . - . ID=Phyra74648.1;Parent=Phyra74648;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 211120 214284 . + . ID=Phyra74649;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000052;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 211120 214284 . + . ID=Phyra74649;Parent=Phyra74649;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 211120 214284 . + 0 ID=Phyra74649;Parent=Phyra74649;rank=1 scaffold_9 . exon 211120 214284 . + . ID=Phyra74649.1;Parent=Phyra74649;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 215786 217007 . + . ID=Phyra74650;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000053;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 215786 217007 . + . ID=Phyra74650;Parent=Phyra74650;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 215786 215883 . + 0 ID=Phyra74650;Parent=Phyra74650;rank=1 scaffold_9 . exon 215786 215883 . + . ID=Phyra74650.1;Parent=Phyra74650;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 215951 216344 . + 0 ID=Phyra74650;Parent=Phyra74650;rank=2 scaffold_9 . exon 215951 216344 . + . ID=Phyra74650.2;Parent=Phyra74650;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 216411 217007 . + 0 ID=Phyra74650;Parent=Phyra74650;rank=3 scaffold_9 . exon 216411 217007 . + . ID=Phyra74650.3;Parent=Phyra74650;constitutive=1;rank=3 scaffold_9 ensembl protein_coding_gene 217771 218805 . + . ID=Phyra74651;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000054;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 217771 218805 . + . ID=Phyra74651;Parent=Phyra74651;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 217771 218805 . + 0 ID=Phyra74651;Parent=Phyra74651;rank=1 scaffold_9 . exon 217771 218805 . + . ID=Phyra74651.1;Parent=Phyra74651;constitutive=1;rank=1 scaffold_9 . repeat_region 219180 219198 . ? . description=dust scaffold_9 . repeat_region 219250 219259 . ? . description=dust scaffold_9 . repeat_region 225300 225316 . ? . description=dust scaffold_9 . repeat_region 226515 226522 . ? . description=dust scaffold_9 . repeat_region 227904 227912 . ? . description=dust scaffold_9 . repeat_region 228087 228097 . ? . description=dust scaffold_9 . repeat_region 228865 228872 . ? . description=dust scaffold_9 ensembl protein_coding_gene 219894 222339 . + . ID=Phyra74652;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000055;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 219894 222339 . + . ID=Phyra74652;Parent=Phyra74652;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 219894 219935 . + 0 ID=Phyra74652;Parent=Phyra74652;rank=1 scaffold_9 . exon 219894 219935 . + . ID=Phyra74652.1;Parent=Phyra74652;constitutive=1;rank=1 scaffold_9 . CDS 220193 220632 . + 0 ID=Phyra74652;Parent=Phyra74652;rank=2 scaffold_9 . exon 220193 220632 . + . ID=Phyra74652.2;Parent=Phyra74652;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 220711 220838 . + 0 ID=Phyra74652;Parent=Phyra74652;rank=3 scaffold_9 . exon 220711 220838 . + . ID=Phyra74652.3;Parent=Phyra74652;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 221039 222339 . + 0 ID=Phyra74652;Parent=Phyra74652;rank=4 scaffold_9 . exon 221039 222339 . + . ID=Phyra74652.4;Parent=Phyra74652;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . biological_region 229700 229702 0.999 - . logic_name=eponine scaffold_9 . biological_region 229755 229757 0.999 + . logic_name=eponine scaffold_9 . biological_region 230150 230152 0.999 - . logic_name=eponine scaffold_9 . biological_region 233716 233720 0.999 - . logic_name=eponine scaffold_9 . biological_region 234052 234054 0.999 + . logic_name=eponine scaffold_9 . biological_region 234160 234163 0.999 - . logic_name=eponine scaffold_9 . repeat_region 238881 238905 . ? . description=trf scaffold_9 ensembl protein_coding_gene 234054 236153 . + . ID=Phyra54177;biotype=protein_coding;external_name=gwEuk.9.2.1;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 234054 236153 . + . ID=Phyra54177;Parent=Phyra54177;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 234054 236153 . + 0 ID=Phyra54177;Parent=Phyra54177;rank=1 scaffold_9 . exon 234054 236153 . + . ID=Phyra54177.1;Parent=Phyra54177;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 229565 230273 . + . ID=Phyra74653;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000056;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 229565 230273 . + . ID=Phyra74653;Parent=Phyra74653;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 229565 229665 . + 0 ID=Phyra74653;Parent=Phyra74653;rank=1 scaffold_9 . exon 229565 229665 . + . ID=Phyra74653.1;Parent=Phyra74653;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 229745 230273 . + 0 ID=Phyra74653;Parent=Phyra74653;rank=2 scaffold_9 . exon 229745 230273 . + . ID=Phyra74653.2;Parent=Phyra74653;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 ensembl protein_coding_gene 233080 234029 . + . ID=Phyra74654;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000057;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 233080 234029 . + . ID=Phyra74654;Parent=Phyra74654;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 233080 233082 . + 0 ID=Phyra74654;Parent=Phyra74654;rank=1 scaffold_9 . exon 233080 233082 . + . ID=Phyra74654.1;Parent=Phyra74654;constitutive=1;rank=1 scaffold_9 . CDS 233121 233279 . + 0 ID=Phyra74654;Parent=Phyra74654;rank=2 scaffold_9 . exon 233121 233279 . + . ID=Phyra74654.2;Parent=Phyra74654;constitutive=1;rank=2 scaffold_9 . CDS 233382 233445 . + 0 ID=Phyra74654;Parent=Phyra74654;rank=3 scaffold_9 . exon 233382 233445 . + . ID=Phyra74654.3;Parent=Phyra74654;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 233502 233723 . + 0 ID=Phyra74654;Parent=Phyra74654;rank=4 scaffold_9 . exon 233502 233723 . + . ID=Phyra74654.4;Parent=Phyra74654;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 233908 234029 . + 0 ID=Phyra74654;Parent=Phyra74654;rank=5 scaffold_9 . exon 233908 234029 . + . ID=Phyra74654.5;Parent=Phyra74654;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 ensembl protein_coding_gene 236642 237650 . - . ID=Phyra74656;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000059;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 236642 237650 . - . ID=Phyra74656;Parent=Phyra74656;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 236642 236653 . - 0 ID=Phyra74656;Parent=Phyra74656;rank=3 scaffold_9 . exon 236642 236653 . - . ID=Phyra74656.3;Parent=Phyra74656;constitutive=1;rank=3 scaffold_9 . CDS 236808 237149 . - 0 ID=Phyra74656;Parent=Phyra74656;rank=2 scaffold_9 . exon 236808 237149 . - . ID=Phyra74656.2;Parent=Phyra74656;constitutive=1;rank=2 scaffold_9 . CDS 237237 237650 . - 0 ID=Phyra74656;Parent=Phyra74656;rank=1 scaffold_9 . exon 237237 237650 . - . ID=Phyra74656.1;Parent=Phyra74656;constitutive=1;rank=1 scaffold_9 . repeat_region 239228 239472 . - . description=GypsyPi-1c_I-int scaffold_9 . repeat_region 239606 239829 . - . description=GypsyPi-1c_I-int scaffold_9 . repeat_region 242326 242369 . ? . description=dust scaffold_9 ensembl protein_coding_gene 242387 245967 . + . ID=Phyra74657;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000060;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 242387 245967 . + . ID=Phyra74657;Parent=Phyra74657;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 242387 243342 . + 0 ID=Phyra74657;Parent=Phyra74657;rank=1 scaffold_9 . exon 242387 243342 . + . ID=Phyra74657.1;Parent=Phyra74657;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 243530 243776 . + 0 ID=Phyra74657;Parent=Phyra74657;rank=2 scaffold_9 . exon 243530 243776 . + . ID=Phyra74657.2;Parent=Phyra74657;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 243988 244097 . + 0 ID=Phyra74657;Parent=Phyra74657;rank=3 scaffold_9 . exon 243988 244097 . + . ID=Phyra74657.3;Parent=Phyra74657;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_9 . CDS 244174 244276 . + 0 ID=Phyra74657;Parent=Phyra74657;rank=4 scaffold_9 . exon 244174 244276 . + . ID=Phyra74657.4;Parent=Phyra74657;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 244347 245163 . + 0 ID=Phyra74657;Parent=Phyra74657;rank=5 scaffold_9 . exon 244347 245163 . + . ID=Phyra74657.5;Parent=Phyra74657;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_9 . CDS 245235 245315 . + 0 ID=Phyra74657;Parent=Phyra74657;rank=6 scaffold_9 . exon 245235 245315 . + . ID=Phyra74657.6;Parent=Phyra74657;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_9 . CDS 245389 245510 . + 0 ID=Phyra74657;Parent=Phyra74657;rank=7 scaffold_9 . exon 245389 245510 . + . ID=Phyra74657.7;Parent=Phyra74657;constitutive=1;ensembl_phase=1;rank=7 scaffold_9 . CDS 245590 245661 . + 0 ID=Phyra74657;Parent=Phyra74657;rank=8 scaffold_9 . exon 245590 245661 . + . ID=Phyra74657.8;Parent=Phyra74657;constitutive=1;rank=8 scaffold_9 . CDS 245728 245967 . + 0 ID=Phyra74657;Parent=Phyra74657;rank=9 scaffold_9 . exon 245728 245967 . + . ID=Phyra74657.9;Parent=Phyra74657;constitutive=1;rank=9 scaffold_9 ensembl protein_coding_gene 247154 249056 . + . ID=Phyra93857;biotype=protein_coding;external_name=C_scaffold_9000011;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 247154 249056 . + . ID=Phyra93857;Parent=Phyra93857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 247154 247648 . + 0 ID=Phyra93857;Parent=Phyra93857;rank=1 scaffold_9 . exon 247154 247648 . + . ID=Phyra93857.1;Parent=Phyra93857;constitutive=1;rank=1 scaffold_9 . CDS 247815 247901 . + 0 ID=Phyra93857;Parent=Phyra93857;rank=2 scaffold_9 . exon 247815 247901 . + . ID=Phyra93857.2;Parent=Phyra93857;constitutive=1;rank=2 scaffold_9 . CDS 247980 248385 . + 0 ID=Phyra93857;Parent=Phyra93857;rank=3 scaffold_9 . exon 247980 248385 . + . ID=Phyra93857.3;Parent=Phyra93857;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 248473 248819 . + 0 ID=Phyra93857;Parent=Phyra93857;rank=4 scaffold_9 . exon 248473 248819 . + . ID=Phyra93857.4;Parent=Phyra93857;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 248847 249056 . + 0 ID=Phyra93857;Parent=Phyra93857;rank=5 scaffold_9 . exon 248847 249056 . + . ID=Phyra93857.5;Parent=Phyra93857;constitutive=1;rank=5 scaffold_9 . biological_region 252428 252431 0.999 - . logic_name=eponine scaffold_9 . repeat_region 252938 253021 . ? . description=trf scaffold_9 . repeat_region 254135 254169 . ? . description=trf scaffold_9 ensembl protein_coding_gene 249219 261711 . - . ID=Phyra74659;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000062;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 249219 261711 . - . ID=Phyra74659;Parent=Phyra74659;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 249219 249500 . - 0 ID=Phyra74659;Parent=Phyra74659;rank=13 scaffold_9 . exon 249219 249500 . - . ID=Phyra74659.13;Parent=Phyra74659;constitutive=1;rank=13 scaffold_9 . CDS 249576 250247 . - 0 ID=Phyra74659;Parent=Phyra74659;rank=12 scaffold_9 . exon 249576 250247 . - . ID=Phyra74659.12;Parent=Phyra74659;constitutive=1;rank=12 scaffold_9 . CDS 250335 250512 . - 0 ID=Phyra74659;Parent=Phyra74659;rank=11 scaffold_9 . exon 250335 250512 . - . ID=Phyra74659.11;Parent=Phyra74659;constitutive=1;ensembl_phase=2;rank=11 scaffold_9 . CDS 250599 250728 . - 0 ID=Phyra74659;Parent=Phyra74659;rank=10 scaffold_9 . exon 250599 250728 . - . ID=Phyra74659.10;Parent=Phyra74659;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_9 . CDS 250767 250825 . - 0 ID=Phyra74659;Parent=Phyra74659;rank=9 scaffold_9 . exon 250767 250825 . - . ID=Phyra74659.9;Parent=Phyra74659;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_9 . CDS 250958 251074 . - 0 ID=Phyra74659;Parent=Phyra74659;rank=8 scaffold_9 . exon 250958 251074 . - . ID=Phyra74659.8;Parent=Phyra74659;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_9 . CDS 251148 251323 . - 0 ID=Phyra74659;Parent=Phyra74659;rank=7 scaffold_9 . exon 251148 251323 . - . ID=Phyra74659.7;Parent=Phyra74659;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_9 . CDS 251388 251480 . - 0 ID=Phyra74659;Parent=Phyra74659;rank=6 scaffold_9 . exon 251388 251480 . - . ID=Phyra74659.6;Parent=Phyra74659;constitutive=1;rank=6 scaffold_9 . CDS 251545 251616 . - 0 ID=Phyra74659;Parent=Phyra74659;rank=5 scaffold_9 . exon 251545 251616 . - . ID=Phyra74659.5;Parent=Phyra74659;constitutive=1;rank=5 scaffold_9 . CDS 251826 252029 . - 0 ID=Phyra74659;Parent=Phyra74659;rank=4 scaffold_9 . exon 251826 252029 . - . ID=Phyra74659.4;Parent=Phyra74659;constitutive=1;rank=4 scaffold_9 . CDS 252106 252270 . - 0 ID=Phyra74659;Parent=Phyra74659;rank=3 scaffold_9 . exon 252106 252270 . - . ID=Phyra74659.3;Parent=Phyra74659;constitutive=1;rank=3 scaffold_9 . CDS 252350 252560 . - 0 ID=Phyra74659;Parent=Phyra74659;rank=2 scaffold_9 . exon 252350 252560 . - . ID=Phyra74659.2;Parent=Phyra74659;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 253040 261711 . - 0 ID=Phyra74659;Parent=Phyra74659;rank=1 scaffold_9 . exon 253040 261711 . - . ID=Phyra74659.1;Parent=Phyra74659;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . repeat_region 262190 262218 . ? . description=dust scaffold_9 ensembl protein_coding_gene 261976 266339 . - . ID=Phyra74660;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000063;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 261976 266339 . - . ID=Phyra74660;Parent=Phyra74660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 261976 262221 . - 0 ID=Phyra74660;Parent=Phyra74660;rank=6 scaffold_9 . exon 261976 262221 . - . ID=Phyra74660.6;Parent=Phyra74660;constitutive=1;rank=6 scaffold_9 . CDS 262337 263972 . - 0 ID=Phyra74660;Parent=Phyra74660;rank=5 scaffold_9 . exon 262337 263972 . - . ID=Phyra74660.5;Parent=Phyra74660;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 264015 264019 . - 0 ID=Phyra74660;Parent=Phyra74660;rank=4 scaffold_9 . exon 264015 264019 . - . ID=Phyra74660.4;Parent=Phyra74660;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_9 . CDS 264237 264420 . - 0 ID=Phyra74660;Parent=Phyra74660;rank=3 scaffold_9 . exon 264237 264420 . - . ID=Phyra74660.3;Parent=Phyra74660;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 264505 265205 . - 0 ID=Phyra74660;Parent=Phyra74660;rank=2 scaffold_9 . exon 264505 265205 . - . ID=Phyra74660.2;Parent=Phyra74660;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 265272 266339 . - 0 ID=Phyra74660;Parent=Phyra74660;rank=1 scaffold_9 . exon 265272 266339 . - . ID=Phyra74660.1;Parent=Phyra74660;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 268946 270241 . + . ID=Phyra74661;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000064;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 268946 270241 . + . ID=Phyra74661;Parent=Phyra74661;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 268946 270241 . + 0 ID=Phyra74661;Parent=Phyra74661;rank=1 scaffold_9 . exon 268946 270241 . + . ID=Phyra74661.1;Parent=Phyra74661;constitutive=1;rank=1 scaffold_9 . biological_region 275287 275288 0.999 - . logic_name=eponine scaffold_9 . biological_region 276705 276707 0.999 + . logic_name=eponine scaffold_9 . biological_region 276843 276844 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 274563 275579 . + . ID=Phyra71231;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000010;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 274563 275579 . + . ID=Phyra71231;Parent=Phyra71231;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 274563 274615 . + 0 ID=Phyra71231;Parent=Phyra71231;rank=1 scaffold_9 . exon 274563 274615 . + . ID=Phyra71231.1;Parent=Phyra71231;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 274656 274737 . + 0 ID=Phyra71231;Parent=Phyra71231;rank=2 scaffold_9 . exon 274656 274737 . + . ID=Phyra71231.2;Parent=Phyra71231;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 274813 274904 . + 0 ID=Phyra71231;Parent=Phyra71231;rank=3 scaffold_9 . exon 274813 274904 . + . ID=Phyra71231.3;Parent=Phyra71231;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_9 . CDS 275033 275579 . + 0 ID=Phyra71231;Parent=Phyra71231;rank=4 scaffold_9 . exon 275033 275579 . + . ID=Phyra71231.4;Parent=Phyra71231;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 ensembl protein_coding_gene 270449 271414 . - . ID=Phyra74662;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000065;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 270449 271414 . - . ID=Phyra74662;Parent=Phyra74662;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 270449 271414 . - 0 ID=Phyra74662;Parent=Phyra74662;rank=1 scaffold_9 . exon 270449 271414 . - . ID=Phyra74662.1;Parent=Phyra74662;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 276169 278835 . - . ID=Phyra74664;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000067;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 276169 278835 . - . ID=Phyra74664;Parent=Phyra74664;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 276169 276305 . - 0 ID=Phyra74664;Parent=Phyra74664;rank=3 scaffold_9 . exon 276169 276305 . - . ID=Phyra74664.3;Parent=Phyra74664;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 276379 277223 . - 0 ID=Phyra74664;Parent=Phyra74664;rank=2 scaffold_9 . exon 276379 277223 . - . ID=Phyra74664.2;Parent=Phyra74664;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 277553 278835 . - 0 ID=Phyra74664;Parent=Phyra74664;rank=1 scaffold_9 . exon 277553 278835 . - . ID=Phyra74664.1;Parent=Phyra74664;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . repeat_region 280900 280923 . ? . description=trf scaffold_9 . repeat_region 280900 280923 . ? . description=dust scaffold_9 . repeat_region 288164 288225 . ? . description=trf scaffold_9 . repeat_region 288164 288225 . ? . description=trf scaffold_9 ensembl protein_coding_gene 279247 281007 . - . ID=Phyra71232;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000011;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 279247 281007 . - . ID=Phyra71232;Parent=Phyra71232;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 279247 281007 . - 0 ID=Phyra71232;Parent=Phyra71232;rank=1 scaffold_9 . exon 279247 281007 . - . ID=Phyra71232.1;Parent=Phyra71232;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 281162 281803 . + . ID=Phyra74666;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000069;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 281162 281803 . + . ID=Phyra74666;Parent=Phyra74666;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 281162 281803 . + 0 ID=Phyra74666;Parent=Phyra74666;rank=1 scaffold_9 . exon 281162 281803 . + . ID=Phyra74666.1;Parent=Phyra74666;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 283796 288375 . - . ID=Phyra93860;biotype=protein_coding;external_name=C_scaffold_9000014;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 283796 288375 . - . ID=Phyra93860;Parent=Phyra93860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 283796 284188 . - 0 ID=Phyra93860;Parent=Phyra93860;rank=8 scaffold_9 . exon 283796 284188 . - . ID=Phyra93860.8;Parent=Phyra93860;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_9 . CDS 284240 284668 . - 0 ID=Phyra93860;Parent=Phyra93860;rank=7 scaffold_9 . exon 284240 284668 . - . ID=Phyra93860.7;Parent=Phyra93860;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_9 . CDS 284798 284960 . - 0 ID=Phyra93860;Parent=Phyra93860;rank=6 scaffold_9 . exon 284798 284960 . - . ID=Phyra93860.6;Parent=Phyra93860;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_9 . CDS 284988 285419 . - 0 ID=Phyra93860;Parent=Phyra93860;rank=5 scaffold_9 . exon 284988 285419 . - . ID=Phyra93860.5;Parent=Phyra93860;constitutive=1;rank=5 scaffold_9 . CDS 285799 286262 . - 0 ID=Phyra93860;Parent=Phyra93860;rank=4 scaffold_9 . exon 285799 286262 . - . ID=Phyra93860.4;Parent=Phyra93860;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 286287 287558 . - 0 ID=Phyra93860;Parent=Phyra93860;rank=3 scaffold_9 . exon 286287 287558 . - . ID=Phyra93860.3;Parent=Phyra93860;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 287592 288104 . - 0 ID=Phyra93860;Parent=Phyra93860;rank=2 scaffold_9 . exon 287592 288104 . - . ID=Phyra93860.2;Parent=Phyra93860;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 288294 288375 . - 0 ID=Phyra93860;Parent=Phyra93860;rank=1 scaffold_9 . exon 288294 288375 . - . ID=Phyra93860.1;Parent=Phyra93860;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 292769 296308 . - . ID=Phyra74668;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000071;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 292769 296308 . - . ID=Phyra74668;Parent=Phyra74668;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 292769 293086 . - 0 ID=Phyra74668;Parent=Phyra74668;rank=4 scaffold_9 . exon 292769 293086 . - . ID=Phyra74668.4;Parent=Phyra74668;constitutive=1;rank=4 scaffold_9 . CDS 293153 293554 . - 0 ID=Phyra74668;Parent=Phyra74668;rank=3 scaffold_9 . exon 293153 293554 . - . ID=Phyra74668.3;Parent=Phyra74668;constitutive=1;rank=3 scaffold_9 . CDS 293634 293711 . - 0 ID=Phyra74668;Parent=Phyra74668;rank=2 scaffold_9 . exon 293634 293711 . - . ID=Phyra74668.2;Parent=Phyra74668;constitutive=1;rank=2 scaffold_9 . CDS 293774 296308 . - 0 ID=Phyra74668;Parent=Phyra74668;rank=1 scaffold_9 . exon 293774 296308 . - . ID=Phyra74668.1;Parent=Phyra74668;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 296597 297655 . + . ID=Phyra74669;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000072;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 296597 297655 . + . ID=Phyra74669;Parent=Phyra74669;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 296597 296884 . + 0 ID=Phyra74669;Parent=Phyra74669;rank=1 scaffold_9 . exon 296597 296884 . + . ID=Phyra74669.1;Parent=Phyra74669;constitutive=1;rank=1 scaffold_9 . CDS 296960 297115 . + 0 ID=Phyra74669;Parent=Phyra74669;rank=2 scaffold_9 . exon 296960 297115 . + . ID=Phyra74669.2;Parent=Phyra74669;constitutive=1;rank=2 scaffold_9 . CDS 297176 297328 . + 0 ID=Phyra74669;Parent=Phyra74669;rank=3 scaffold_9 . exon 297176 297328 . + . ID=Phyra74669.3;Parent=Phyra74669;constitutive=1;rank=3 scaffold_9 . CDS 297396 297553 . + 0 ID=Phyra74669;Parent=Phyra74669;rank=4 scaffold_9 . exon 297396 297553 . + . ID=Phyra74669.4;Parent=Phyra74669;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_9 . CDS 297598 297655 . + 0 ID=Phyra74669;Parent=Phyra74669;rank=5 scaffold_9 . exon 297598 297655 . + . ID=Phyra74669.5;Parent=Phyra74669;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . biological_region 300688 300693 0.999 - . logic_name=eponine scaffold_9 . repeat_region 301890 301933 . ? . description=trf scaffold_9 . biological_region 303409 303413 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 301763 304271 . - . ID=Phyra74670;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000073;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 301763 304271 . - . ID=Phyra74670;Parent=Phyra74670;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 301763 302114 . - 0 ID=Phyra74670;Parent=Phyra74670;rank=5 scaffold_9 . exon 301763 302114 . - . ID=Phyra74670.5;Parent=Phyra74670;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 302186 302564 . - 0 ID=Phyra74670;Parent=Phyra74670;rank=4 scaffold_9 . exon 302186 302564 . - . ID=Phyra74670.4;Parent=Phyra74670;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_9 . CDS 302646 302792 . - 0 ID=Phyra74670;Parent=Phyra74670;rank=3 scaffold_9 . exon 302646 302792 . - . ID=Phyra74670.3;Parent=Phyra74670;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 302865 304128 . - 0 ID=Phyra74670;Parent=Phyra74670;rank=2 scaffold_9 . exon 302865 304128 . - . ID=Phyra74670.2;Parent=Phyra74670;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 304203 304271 . - 0 ID=Phyra74670;Parent=Phyra74670;rank=1 scaffold_9 . exon 304203 304271 . - . ID=Phyra74670.1;Parent=Phyra74670;constitutive=1;rank=1 scaffold_9 . repeat_region 311365 311381 . ? . description=dust scaffold_9 ensembl protein_coding_gene 310188 311196 . - . ID=Phyra74671;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000074;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 310188 311196 . - . ID=Phyra74671;Parent=Phyra74671;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 310188 310195 . - 0 ID=Phyra74671;Parent=Phyra74671;rank=2 scaffold_9 . exon 310188 310195 . - . ID=Phyra74671.2;Parent=Phyra74671;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 310410 311196 . - 0 ID=Phyra74671;Parent=Phyra74671;rank=1 scaffold_9 . exon 310410 311196 . - . ID=Phyra74671.1;Parent=Phyra74671;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 311608 311984 . - . ID=Phyra74672;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000075;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 311608 311984 . - . ID=Phyra74672;Parent=Phyra74672;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 311608 311712 . - 0 ID=Phyra74672;Parent=Phyra74672;rank=2 scaffold_9 . exon 311608 311712 . - . ID=Phyra74672.2;Parent=Phyra74672;constitutive=1;rank=2 scaffold_9 . CDS 311784 311984 . - 0 ID=Phyra74672;Parent=Phyra74672;rank=1 scaffold_9 . exon 311784 311984 . - . ID=Phyra74672.1;Parent=Phyra74672;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 312173 312829 . - . ID=Phyra74673;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000076;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 312173 312829 . - . ID=Phyra74673;Parent=Phyra74673;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 312173 312829 . - 0 ID=Phyra74673;Parent=Phyra74673;rank=1 scaffold_9 . exon 312173 312829 . - . ID=Phyra74673.1;Parent=Phyra74673;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 316337 317317 . - . ID=Phyra74674;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000077;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 316337 317317 . - . ID=Phyra74674;Parent=Phyra74674;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 316337 317317 . - 0 ID=Phyra74674;Parent=Phyra74674;rank=1 scaffold_9 . exon 316337 317317 . - . ID=Phyra74674.1;Parent=Phyra74674;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 318270 319292 . + . ID=Phyra74675;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000078;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 318270 319292 . + . ID=Phyra74675;Parent=Phyra74675;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 318270 318278 . + 0 ID=Phyra74675;Parent=Phyra74675;rank=1 scaffold_9 . exon 318270 318278 . + . ID=Phyra74675.1;Parent=Phyra74675;constitutive=1;rank=1 scaffold_9 . CDS 318354 319292 . + 0 ID=Phyra74675;Parent=Phyra74675;rank=2 scaffold_9 . exon 318354 319292 . + . ID=Phyra74675.2;Parent=Phyra74675;constitutive=1;rank=2 scaffold_9 . repeat_region 322793 324232 . ? . description=trf scaffold_9 . repeat_region 322844 322885 . ? . description=trf scaffold_9 . repeat_region 323021 323062 . ? . description=trf scaffold_9 . repeat_region 323198 323239 . ? . description=trf scaffold_9 . repeat_region 323375 323416 . ? . description=trf scaffold_9 . repeat_region 323552 323593 . ? . description=trf scaffold_9 . repeat_region 323729 323770 . ? . description=trf scaffold_9 . repeat_region 323906 323947 . ? . description=trf scaffold_9 . repeat_region 324083 324124 . ? . description=trf scaffold_9 . repeat_region 326671 326724 . ? . description=trf scaffold_9 . repeat_region 326672 326717 . ? . description=trf scaffold_9 . repeat_region 326809 327131 . ? . description=trf scaffold_9 . repeat_region 327157 327210 . ? . description=trf scaffold_9 . repeat_region 327158 327203 . ? . description=trf scaffold_9 . biological_region 327943 327945 0.999 + . logic_name=eponine scaffold_9 . biological_region 327978 327981 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 320538 321563 . - . ID=Phyra74676;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000079;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 320538 321563 . - . ID=Phyra74676;Parent=Phyra74676;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 320538 321563 . - 0 ID=Phyra74676;Parent=Phyra74676;rank=1 scaffold_9 . exon 320538 321563 . - . ID=Phyra74676.1;Parent=Phyra74676;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 322079 324280 . + . ID=Phyra74677;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000080;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 322079 324280 . + . ID=Phyra74677;Parent=Phyra74677;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 322079 324280 . + 0 ID=Phyra74677;Parent=Phyra74677;rank=1 scaffold_9 . exon 322079 324280 . + . ID=Phyra74677.1;Parent=Phyra74677;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 326041 327453 . + . ID=Phyra74678;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000081;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 326041 327453 . + . ID=Phyra74678;Parent=Phyra74678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 326041 327453 . + 0 ID=Phyra74678;Parent=Phyra74678;rank=1 scaffold_9 . exon 326041 327453 . + . ID=Phyra74678.1;Parent=Phyra74678;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 327753 330503 . + . ID=Phyra74679;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000082;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 327753 330503 . + . ID=Phyra74679;Parent=Phyra74679;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 327753 330503 . + 0 ID=Phyra74679;Parent=Phyra74679;rank=1 scaffold_9 . exon 327753 330503 . + . ID=Phyra74679.1;Parent=Phyra74679;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 330678 332400 . - . ID=Phyra74680;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000083;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 330678 332400 . - . ID=Phyra74680;Parent=Phyra74680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 330678 330848 . - 0 ID=Phyra74680;Parent=Phyra74680;rank=8 scaffold_9 . exon 330678 330848 . - . ID=Phyra74680.8;Parent=Phyra74680;constitutive=1;rank=8 scaffold_9 . CDS 330911 330982 . - 0 ID=Phyra74680;Parent=Phyra74680;rank=7 scaffold_9 . exon 330911 330982 . - . ID=Phyra74680.7;Parent=Phyra74680;constitutive=1;rank=7 scaffold_9 . CDS 331049 331592 . - 0 ID=Phyra74680;Parent=Phyra74680;rank=6 scaffold_9 . exon 331049 331592 . - . ID=Phyra74680.6;Parent=Phyra74680;constitutive=1;ensembl_phase=2;rank=6 scaffold_9 . CDS 331670 331761 . - 0 ID=Phyra74680;Parent=Phyra74680;rank=5 scaffold_9 . exon 331670 331761 . - . ID=Phyra74680.5;Parent=Phyra74680;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_9 . CDS 331821 331915 . - 0 ID=Phyra74680;Parent=Phyra74680;rank=4 scaffold_9 . exon 331821 331915 . - . ID=Phyra74680.4;Parent=Phyra74680;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 331987 332101 . - 0 ID=Phyra74680;Parent=Phyra74680;rank=3 scaffold_9 . exon 331987 332101 . - . ID=Phyra74680.3;Parent=Phyra74680;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 332168 332226 . - 0 ID=Phyra74680;Parent=Phyra74680;rank=2 scaffold_9 . exon 332168 332226 . - . ID=Phyra74680.2;Parent=Phyra74680;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 332295 332400 . - 0 ID=Phyra74680;Parent=Phyra74680;rank=1 scaffold_9 . exon 332295 332400 . - . ID=Phyra74680.1;Parent=Phyra74680;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 333825 334414 . + . ID=Phyra93862;biotype=protein_coding;external_name=C_scaffold_9000016;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 333825 334414 . + . ID=Phyra93862;Parent=Phyra93862;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 333825 333844 . + 0 ID=Phyra93862;Parent=Phyra93862;rank=1 scaffold_9 . exon 333825 333844 . + . ID=Phyra93862.1;Parent=Phyra93862;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 334129 334414 . + 0 ID=Phyra93862;Parent=Phyra93862;rank=2 scaffold_9 . exon 334129 334414 . + . ID=Phyra93862.2;Parent=Phyra93862;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 ensembl protein_coding_gene 334548 339186 . - . ID=Phyra93863;biotype=protein_coding;external_name=C_scaffold_9000017;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 334548 339186 . - . ID=Phyra93863;Parent=Phyra93863;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 334548 335363 . - 0 ID=Phyra93863;Parent=Phyra93863;rank=11 scaffold_9 . exon 334548 335363 . - . ID=Phyra93863.11;Parent=Phyra93863;constitutive=1;rank=11 scaffold_9 . CDS 335562 335735 . - 0 ID=Phyra93863;Parent=Phyra93863;rank=10 scaffold_9 . exon 335562 335735 . - . ID=Phyra93863.10;Parent=Phyra93863;constitutive=1;rank=10 scaffold_9 . CDS 336084 336317 . - 0 ID=Phyra93863;Parent=Phyra93863;rank=9 scaffold_9 . exon 336084 336317 . - . ID=Phyra93863.9;Parent=Phyra93863;constitutive=1;rank=9 scaffold_9 . CDS 336396 336590 . - 0 ID=Phyra93863;Parent=Phyra93863;rank=8 scaffold_9 . exon 336396 336590 . - . ID=Phyra93863.8;Parent=Phyra93863;constitutive=1;rank=8 scaffold_9 . CDS 336671 336823 . - 0 ID=Phyra93863;Parent=Phyra93863;rank=7 scaffold_9 . exon 336671 336823 . - . ID=Phyra93863.7;Parent=Phyra93863;constitutive=1;rank=7 scaffold_9 . CDS 336904 337059 . - 0 ID=Phyra93863;Parent=Phyra93863;rank=6 scaffold_9 . exon 336904 337059 . - . ID=Phyra93863.6;Parent=Phyra93863;constitutive=1;rank=6 scaffold_9 . CDS 337137 337169 . - 0 ID=Phyra93863;Parent=Phyra93863;rank=5 scaffold_9 . exon 337137 337169 . - . ID=Phyra93863.5;Parent=Phyra93863;constitutive=1;rank=5 scaffold_9 . CDS 337243 337900 . - 0 ID=Phyra93863;Parent=Phyra93863;rank=4 scaffold_9 . exon 337243 337900 . - . ID=Phyra93863.4;Parent=Phyra93863;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 338286 338444 . - 0 ID=Phyra93863;Parent=Phyra93863;rank=3 scaffold_9 . exon 338286 338444 . - . ID=Phyra93863.3;Parent=Phyra93863;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_9 . CDS 338609 338951 . - 0 ID=Phyra93863;Parent=Phyra93863;rank=2 scaffold_9 . exon 338609 338951 . - . ID=Phyra93863.2;Parent=Phyra93863;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 339079 339184 . - 0 ID=Phyra93863;Parent=Phyra93863;rank=1 scaffold_9 . biological_region 344839 344842 0.999 + . logic_name=eponine scaffold_9 . biological_region 344985 344985 0.999 - . logic_name=eponine scaffold_9 . repeat_region 347528 347540 . ? . description=dust scaffold_9 ensembl protein_coding_gene 348259 349834 . - . ID=Phyra71233;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000012;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 348259 349834 . - . ID=Phyra71233;Parent=Phyra71233;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 348259 349597 . - 0 ID=Phyra71233;Parent=Phyra71233;rank=2 scaffold_9 . exon 348259 349597 . - . ID=Phyra71233.2;Parent=Phyra71233;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 349650 349834 . - 0 ID=Phyra71233;Parent=Phyra71233;rank=1 scaffold_9 ensembl protein_coding_gene 346975 348047 . + . ID=Phyra74685;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000088;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 346975 348047 . + . ID=Phyra74685;Parent=Phyra74685;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 346975 347469 . + 0 ID=Phyra74685;Parent=Phyra74685;rank=1 scaffold_9 . exon 346975 347469 . + . ID=Phyra74685.1;Parent=Phyra74685;constitutive=1;rank=1 scaffold_9 . CDS 347546 347629 . + 0 ID=Phyra74685;Parent=Phyra74685;rank=2 scaffold_9 . exon 347546 347629 . + . ID=Phyra74685.2;Parent=Phyra74685;constitutive=1;rank=2 scaffold_9 . CDS 347756 347911 . + 0 ID=Phyra74685;Parent=Phyra74685;rank=3 scaffold_9 . exon 347756 347911 . + . ID=Phyra74685.3;Parent=Phyra74685;constitutive=1;rank=3 scaffold_9 . CDS 347979 348047 . + 0 ID=Phyra74685;Parent=Phyra74685;rank=4 scaffold_9 . exon 347979 348047 . + . ID=Phyra74685.4;Parent=Phyra74685;constitutive=1;rank=4 scaffold_9 . exon 339079 339186 . - . ID=Phyra93863.1;Parent=Phyra93863;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 342616 344951 . - . ID=Phyra93864;biotype=protein_coding;external_name=C_scaffold_9000018;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 342616 344951 . - . ID=Phyra93864;Parent=Phyra93864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 342616 342663 . - 0 ID=Phyra93864;Parent=Phyra93864;rank=8 scaffold_9 . exon 342616 342663 . - . ID=Phyra93864.8;Parent=Phyra93864;constitutive=1;rank=8 scaffold_9 . CDS 343018 343101 . - 0 ID=Phyra93864;Parent=Phyra93864;rank=7 scaffold_9 . exon 343018 343101 . - . ID=Phyra93864.7;Parent=Phyra93864;constitutive=1;rank=7 scaffold_9 . CDS 343172 343333 . - 0 ID=Phyra93864;Parent=Phyra93864;rank=6 scaffold_9 . exon 343172 343333 . - . ID=Phyra93864.6;Parent=Phyra93864;constitutive=1;rank=6 scaffold_9 . CDS 343427 343500 . - 0 ID=Phyra93864;Parent=Phyra93864;rank=5 scaffold_9 . exon 343427 343500 . - . ID=Phyra93864.5;Parent=Phyra93864;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 . CDS 343573 343856 . - 0 ID=Phyra93864;Parent=Phyra93864;rank=4 scaffold_9 . exon 343573 343856 . - . ID=Phyra93864.4;Parent=Phyra93864;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 344001 344233 . - 0 ID=Phyra93864;Parent=Phyra93864;rank=3 scaffold_9 . exon 344001 344233 . - . ID=Phyra93864.3;Parent=Phyra93864;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_9 . CDS 344415 344518 . - 0 ID=Phyra93864;Parent=Phyra93864;rank=2 scaffold_9 . exon 344415 344518 . - . ID=Phyra93864.2;Parent=Phyra93864;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 344588 344951 . - 0 ID=Phyra93864;Parent=Phyra93864;rank=1 scaffold_9 . exon 344588 344951 . - . ID=Phyra93864.1;Parent=Phyra93864;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 345871 346869 . - . ID=Phyra93865;biotype=protein_coding;external_name=C_scaffold_9000019;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 345871 346869 . - . ID=Phyra93865;Parent=Phyra93865;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 345871 346528 . - 0 ID=Phyra93865;Parent=Phyra93865;rank=2 scaffold_9 . exon 345871 346528 . - . ID=Phyra93865.2;Parent=Phyra93865;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 346613 346869 . - 0 ID=Phyra93865;Parent=Phyra93865;rank=1 scaffold_9 . exon 346613 346869 . - . ID=Phyra93865.1;Parent=Phyra93865;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . repeat_region 358224 358258 . ? . description=trf scaffold_9 ensembl protein_coding_gene 350346 350942 . + . ID=Phyra54215;biotype=protein_coding;external_name=gwEuk.9.40.1;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 350346 350942 . + . ID=Phyra54215;Parent=Phyra54215;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 350346 350942 . + 0 ID=Phyra54215;Parent=Phyra54215;rank=1 scaffold_9 . exon 350346 350942 . + . ID=Phyra54215.1;Parent=Phyra54215;constitutive=1;rank=1 scaffold_9 . exon 349650 349834 . - . ID=Phyra71233.1;Parent=Phyra71233;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 351391 351846 . + . ID=Phyra74688;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000091;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 351391 351846 . + . ID=Phyra74688;Parent=Phyra74688;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 351391 351846 . + 0 ID=Phyra74688;Parent=Phyra74688;rank=1 scaffold_9 . exon 351391 351846 . + . ID=Phyra74688.1;Parent=Phyra74688;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 352867 357390 . - . ID=Phyra93869;biotype=protein_coding;external_name=C_scaffold_9000023;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 352867 357390 . - . ID=Phyra93869;Parent=Phyra93869;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 352867 353323 . - 0 ID=Phyra93869;Parent=Phyra93869;rank=7 scaffold_9 . exon 352867 353323 . - . ID=Phyra93869.7;Parent=Phyra93869;constitutive=1;ensembl_phase=2;rank=7 scaffold_9 . CDS 353489 353955 . - 0 ID=Phyra93869;Parent=Phyra93869;rank=6 scaffold_9 . exon 353489 353955 . - . ID=Phyra93869.6;Parent=Phyra93869;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_9 . CDS 353995 354675 . - 0 ID=Phyra93869;Parent=Phyra93869;rank=5 scaffold_9 . exon 353995 354675 . - . ID=Phyra93869.5;Parent=Phyra93869;constitutive=1;rank=5 scaffold_9 . CDS 354829 355256 . - 0 ID=Phyra93869;Parent=Phyra93869;rank=4 scaffold_9 . exon 354829 355256 . - . ID=Phyra93869.4;Parent=Phyra93869;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 355296 356697 . - 0 ID=Phyra93869;Parent=Phyra93869;rank=3 scaffold_9 . exon 355296 356697 . - . ID=Phyra93869.3;Parent=Phyra93869;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 356752 357273 . - 0 ID=Phyra93869;Parent=Phyra93869;rank=2 scaffold_9 . exon 356752 357273 . - . ID=Phyra93869.2;Parent=Phyra93869;constitutive=1;rank=2 scaffold_9 . CDS 357301 357390 . - 0 ID=Phyra93869;Parent=Phyra93869;rank=1 scaffold_9 . exon 357301 357390 . - . ID=Phyra93869.1;Parent=Phyra93869;constitutive=1;rank=1 scaffold_9 . repeat_region 358970 359016 . ? . description=dust scaffold_9 . biological_region 359109 359112 0.999 + . logic_name=eponine scaffold_9 . repeat_region 359777 359861 . ? . description=dust scaffold_9 . biological_region 361483 361488 0.999 + . logic_name=eponine scaffold_9 . repeat_region 362144 362207 . ? . description=dust scaffold_9 . biological_region 363755 363758 0.999 + . logic_name=eponine scaffold_9 . repeat_region 366837 366844 . ? . description=dust scaffold_9 ensembl protein_coding_gene 362566 363478 . - . ID=Phyra71235;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000014;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 362566 363478 . - . ID=Phyra71235;Parent=Phyra71235;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 362566 362769 . - 0 ID=Phyra71235;Parent=Phyra71235;rank=6 scaffold_9 . exon 362566 362769 . - . ID=Phyra71235.6;Parent=Phyra71235;constitutive=1;rank=6 scaffold_9 . CDS 362867 362959 . - 0 ID=Phyra71235;Parent=Phyra71235;rank=5 scaffold_9 . exon 362867 362959 . - . ID=Phyra71235.5;Parent=Phyra71235;constitutive=1;rank=5 scaffold_9 . CDS 363051 363138 . - 0 ID=Phyra71235;Parent=Phyra71235;rank=4 scaffold_9 . exon 363051 363138 . - . ID=Phyra71235.4;Parent=Phyra71235;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 363184 363203 . - 0 ID=Phyra71235;Parent=Phyra71235;rank=3 scaffold_9 . exon 363184 363203 . - . ID=Phyra71235.3;Parent=Phyra71235;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_9 . CDS 363234 363257 . - 0 ID=Phyra71235;Parent=Phyra71235;rank=2 scaffold_9 . exon 363234 363257 . - . ID=Phyra71235.2;Parent=Phyra71235;constitutive=1;rank=2 scaffold_9 . CDS 363332 363478 . - 0 ID=Phyra71235;Parent=Phyra71235;rank=1 scaffold_9 . exon 363332 363478 . - . ID=Phyra71235.1;Parent=Phyra71235;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 358869 362117 . - . ID=Phyra74690;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000093;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 358869 362117 . - . ID=Phyra74690;Parent=Phyra74690;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 358869 359522 . - 0 ID=Phyra74690;Parent=Phyra74690;rank=4 scaffold_9 . exon 358869 359522 . - . ID=Phyra74690.4;Parent=Phyra74690;constitutive=1;rank=4 scaffold_9 . CDS 359606 361666 . - 0 ID=Phyra74690;Parent=Phyra74690;rank=3 scaffold_9 . exon 359606 361666 . - . ID=Phyra74690.3;Parent=Phyra74690;constitutive=1;rank=3 scaffold_9 . CDS 361746 361934 . - 0 ID=Phyra74690;Parent=Phyra74690;rank=2 scaffold_9 . exon 361746 361934 . - . ID=Phyra74690.2;Parent=Phyra74690;constitutive=1;rank=2 scaffold_9 . CDS 362019 362117 . - 0 ID=Phyra74690;Parent=Phyra74690;rank=1 scaffold_9 . exon 362019 362117 . - . ID=Phyra74690.1;Parent=Phyra74690;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 363796 366679 . + . ID=Phyra93873;biotype=protein_coding;external_name=C_scaffold_9000027;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 363796 366679 . + . ID=Phyra93873;Parent=Phyra93873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 363796 364831 . + 0 ID=Phyra93873;Parent=Phyra93873;rank=1 scaffold_9 . exon 363796 364831 . + . ID=Phyra93873.1;Parent=Phyra93873;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 364901 364987 . + 0 ID=Phyra93873;Parent=Phyra93873;rank=2 scaffold_9 . exon 364901 364987 . + . ID=Phyra93873.2;Parent=Phyra93873;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 365019 365834 . + 0 ID=Phyra93873;Parent=Phyra93873;rank=3 scaffold_9 . exon 365019 365834 . + . ID=Phyra93873.3;Parent=Phyra93873;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 366354 366679 . + 0 ID=Phyra93873;Parent=Phyra93873;rank=4 scaffold_9 . exon 366354 366679 . + . ID=Phyra93873.4;Parent=Phyra93873;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 ensembl protein_coding_gene 367049 368293 . - . ID=Phyra93875;biotype=protein_coding;external_name=C_scaffold_9000029;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 367049 368293 . - . ID=Phyra93875;Parent=Phyra93875;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 367049 367359 . - 0 ID=Phyra93875;Parent=Phyra93875;rank=4 scaffold_9 . exon 367049 367359 . - . ID=Phyra93875.4;Parent=Phyra93875;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 367430 367579 . - 0 ID=Phyra93875;Parent=Phyra93875;rank=3 scaffold_9 . exon 367430 367579 . - . ID=Phyra93875.3;Parent=Phyra93875;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 367625 368207 . - 0 ID=Phyra93875;Parent=Phyra93875;rank=2 scaffold_9 . exon 367625 368207 . - . ID=Phyra93875.2;Parent=Phyra93875;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 368282 368293 . - 0 ID=Phyra93875;Parent=Phyra93875;rank=1 scaffold_9 . exon 368282 368293 . - . ID=Phyra93875.1;Parent=Phyra93875;constitutive=1;rank=1 scaffold_9 . repeat_region 372146 372183 . ? . description=trf scaffold_9 ensembl protein_coding_gene 373180 374631 . + . ID=Phyra74695;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000098;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 373180 374631 . + . ID=Phyra74695;Parent=Phyra74695;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 373180 374631 . + 0 ID=Phyra74695;Parent=Phyra74695;rank=1 scaffold_9 . exon 373180 374631 . + . ID=Phyra74695.1;Parent=Phyra74695;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 376904 377562 . + . ID=Phyra74696;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000099;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 376904 377562 . + . ID=Phyra74696;Parent=Phyra74696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 376904 377078 . + 0 ID=Phyra74696;Parent=Phyra74696;rank=1 scaffold_9 . exon 376904 377078 . + . ID=Phyra74696.1;Parent=Phyra74696;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 377161 377186 . + 0 ID=Phyra74696;Parent=Phyra74696;rank=2 scaffold_9 . exon 377161 377186 . + . ID=Phyra74696.2;Parent=Phyra74696;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 377350 377562 . + 0 ID=Phyra74696;Parent=Phyra74696;rank=3 scaffold_9 . exon 377350 377562 . + . ID=Phyra74696.3;Parent=Phyra74696;constitutive=1;rank=3 scaffold_9 ensembl protein_coding_gene 369417 371006 . + . ID=Phyra93878;biotype=protein_coding;external_name=C_scaffold_9000032;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 369417 371006 . + . ID=Phyra93878;Parent=Phyra93878;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 369417 369911 . + 0 ID=Phyra93878;Parent=Phyra93878;rank=1 scaffold_9 . exon 369417 369911 . + . ID=Phyra93878.1;Parent=Phyra93878;constitutive=1;rank=1 scaffold_9 . CDS 369995 370247 . + 0 ID=Phyra93878;Parent=Phyra93878;rank=2 scaffold_9 . exon 369995 370247 . + . ID=Phyra93878.2;Parent=Phyra93878;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 370326 370578 . + 0 ID=Phyra93878;Parent=Phyra93878;rank=3 scaffold_9 . exon 370326 370578 . + . ID=Phyra93878.3;Parent=Phyra93878;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_9 . CDS 370614 370632 . + 0 ID=Phyra93878;Parent=Phyra93878;rank=4 scaffold_9 . exon 370614 370632 . + . ID=Phyra93878.4;Parent=Phyra93878;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 370788 371006 . + 0 ID=Phyra93878;Parent=Phyra93878;rank=5 scaffold_9 . exon 370788 371006 . + . ID=Phyra93878.5;Parent=Phyra93878;constitutive=1;rank=5 scaffold_9 . biological_region 380035 380037 0.999 + . logic_name=eponine scaffold_9 . repeat_region 384222 384229 . ? . description=dust scaffold_9 . repeat_region 384306 384313 . ? . description=dust scaffold_9 . biological_region 385483 385488 0.999 - . logic_name=eponine scaffold_9 . biological_region 387104 387105 0.999 + . logic_name=eponine scaffold_9 . repeat_region 388128 388177 . ? . description=dust scaffold_9 . biological_region 388543 388547 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 383997 384185 . + . ID=Phyra54230;biotype=protein_coding;external_name=gwEuk.9.55.1;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 383997 384185 . + . ID=Phyra54230;Parent=Phyra54230;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 383997 384185 . + 0 ID=Phyra54230;Parent=Phyra54230;rank=1 scaffold_9 . exon 383997 384185 . + . ID=Phyra54230.1;Parent=Phyra54230;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 384233 386314 . + . ID=Phyra74697;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000100;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 384233 386314 . + . ID=Phyra74697;Parent=Phyra74697;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 384233 384237 . + 0 ID=Phyra74697;Parent=Phyra74697;rank=1 scaffold_9 . exon 384233 384237 . + . ID=Phyra74697.1;Parent=Phyra74697;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 384455 385626 . + 0 ID=Phyra74697;Parent=Phyra74697;rank=2 scaffold_9 . exon 384455 385626 . + . ID=Phyra74697.2;Parent=Phyra74697;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 385707 385806 . + 0 ID=Phyra74697;Parent=Phyra74697;rank=3 scaffold_9 . exon 385707 385806 . + . ID=Phyra74697.3;Parent=Phyra74697;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_9 . CDS 385869 386093 . + 0 ID=Phyra74697;Parent=Phyra74697;rank=4 scaffold_9 . exon 385869 386093 . + . ID=Phyra74697.4;Parent=Phyra74697;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_9 . CDS 386230 386314 . + 0 ID=Phyra74697;Parent=Phyra74697;rank=5 scaffold_9 . exon 386230 386314 . + . ID=Phyra74697.5;Parent=Phyra74697;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 ensembl protein_coding_gene 386822 390563 . + . ID=Phyra74698;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000101;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 386822 390563 . + . ID=Phyra74698;Parent=Phyra74698;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 386822 387703 . + 0 ID=Phyra74698;Parent=Phyra74698;rank=1 scaffold_9 . exon 386822 387703 . + . ID=Phyra74698.1;Parent=Phyra74698;constitutive=1;rank=1 scaffold_9 . CDS 387898 388015 . + 0 ID=Phyra74698;Parent=Phyra74698;rank=2 scaffold_9 . exon 387898 388015 . + . ID=Phyra74698.2;Parent=Phyra74698;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 388347 388410 . + 0 ID=Phyra74698;Parent=Phyra74698;rank=3 scaffold_9 . exon 388347 388410 . + . ID=Phyra74698.3;Parent=Phyra74698;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_9 . CDS 388454 389411 . + 0 ID=Phyra74698;Parent=Phyra74698;rank=4 scaffold_9 . exon 388454 389411 . + . ID=Phyra74698.4;Parent=Phyra74698;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 389664 389873 . + 0 ID=Phyra74698;Parent=Phyra74698;rank=5 scaffold_9 . CDS 390177 390563 . + 0 ID=Phyra74698;Parent=Phyra74698;rank=6 scaffold_9 . repeat_region 394353 394373 . ? . description=trf scaffold_9 . repeat_region 394708 394765 . ? . description=trf scaffold_9 . repeat_region 395792 395812 . ? . description=trf scaffold_9 . repeat_region 397257 397287 . ? . description=trf scaffold_9 . exon 389664 389873 . + . ID=Phyra74698.5;Parent=Phyra74698;constitutive=1;rank=5 scaffold_9 . exon 390177 390563 . + . ID=Phyra74698.6;Parent=Phyra74698;constitutive=1;rank=6 scaffold_9 ensembl protein_coding_gene 395057 403414 . + . ID=Phyra74699;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000102;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 395057 403414 . + . ID=Phyra74699;Parent=Phyra74699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 395057 395910 . + 0 ID=Phyra74699;Parent=Phyra74699;rank=1 scaffold_9 . exon 395057 395910 . + . ID=Phyra74699.1;Parent=Phyra74699;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 395961 396450 . + 0 ID=Phyra74699;Parent=Phyra74699;rank=2 scaffold_9 . exon 395961 396450 . + . ID=Phyra74699.2;Parent=Phyra74699;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 396486 398628 . + 0 ID=Phyra74699;Parent=Phyra74699;rank=3 scaffold_9 . exon 396486 398628 . + . ID=Phyra74699.3;Parent=Phyra74699;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 402348 402477 . + 0 ID=Phyra74699;Parent=Phyra74699;rank=4 scaffold_9 . CDS 402512 403258 . + 0 ID=Phyra74699;Parent=Phyra74699;rank=5 scaffold_9 . CDS 403309 403414 . + 0 ID=Phyra74699;Parent=Phyra74699;rank=6 scaffold_9 . repeat_region 398650 402266 . ? . description=dust scaffold_9 . repeat_region 402345 402392 . ? . description=dust scaffold_9 . biological_region 402487 402488 0.999 - . logic_name=eponine scaffold_9 . biological_region 402764 402766 0.999 - . logic_name=eponine scaffold_9 . biological_region 403149 403153 0.999 - . logic_name=eponine scaffold_9 . biological_region 403205 403207 0.999 - . logic_name=eponine scaffold_9 . biological_region 403363 403367 0.999 + . logic_name=eponine scaffold_9 . repeat_region 403741 405585 . ? . description=dust scaffold_9 . biological_region 405843 405847 0.999 - . logic_name=eponine scaffold_9 . biological_region 405899 405901 0.999 - . logic_name=eponine scaffold_9 . biological_region 406057 406061 0.999 + . logic_name=eponine scaffold_9 . repeat_region 406376 406693 . ? . description=dust scaffold_9 . repeat_region 407920 408105 . ? . description=dust scaffold_9 . biological_region 408185 408189 0.999 + . logic_name=eponine scaffold_9 . biological_region 408419 408423 0.999 - . logic_name=eponine scaffold_9 . exon 402348 402477 . + . ID=Phyra74699.4;Parent=Phyra74699;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_9 . exon 402512 403258 . + . ID=Phyra74699.5;Parent=Phyra74699;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_9 . exon 403309 403414 . + . ID=Phyra74699.6;Parent=Phyra74699;constitutive=1;ensembl_phase=2;rank=6 scaffold_9 ensembl protein_coding_gene 407453 408457 . + . ID=Phyra74700;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000103;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 407453 408457 . + . ID=Phyra74700;Parent=Phyra74700;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 407453 407857 . + 0 ID=Phyra74700;Parent=Phyra74700;rank=1 scaffold_9 . exon 407453 407857 . + . ID=Phyra74700.1;Parent=Phyra74700;constitutive=1;rank=1 scaffold_9 . CDS 408164 408457 . + 0 ID=Phyra74700;Parent=Phyra74700;rank=2 scaffold_9 . exon 408164 408457 . + . ID=Phyra74700.2;Parent=Phyra74700;constitutive=1;rank=2 scaffold_9 . repeat_region 409603 409636 . ? . description=trf scaffold_9 . repeat_region 410274 410294 . ? . description=trf scaffold_9 . repeat_region 410629 410686 . ? . description=trf scaffold_9 . repeat_region 417671 417713 . ? . description=trf scaffold_9 ensembl protein_coding_gene 410978 412127 . + . ID=Phyra74701;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000104;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 410978 412127 . + . ID=Phyra74701;Parent=Phyra74701;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 410978 411472 . + 0 ID=Phyra74701;Parent=Phyra74701;rank=1 scaffold_9 . exon 410978 411472 . + . ID=Phyra74701.1;Parent=Phyra74701;constitutive=1;rank=1 scaffold_9 . CDS 411963 412127 . + 0 ID=Phyra74701;Parent=Phyra74701;rank=2 scaffold_9 . exon 411963 412127 . + . ID=Phyra74701.2;Parent=Phyra74701;constitutive=1;rank=2 scaffold_9 . repeat_region 419013 419020 . ? . description=dust scaffold_9 . repeat_region 419224 419256 . ? . description=dust scaffold_9 . biological_region 419695 419699 0.999 + . logic_name=eponine scaffold_9 . repeat_region 420450 420457 . ? . description=dust scaffold_9 . repeat_region 420661 420693 . ? . description=dust scaffold_9 . biological_region 421132 421136 0.999 + . logic_name=eponine scaffold_9 . repeat_region 423099 423147 . ? . description=dust scaffold_9 . biological_region 423242 423243 0.999 - . logic_name=eponine scaffold_9 . biological_region 423519 423521 0.999 - . logic_name=eponine scaffold_9 . biological_region 423945 423947 0.999 - . logic_name=eponine scaffold_9 . biological_region 424103 424107 0.999 + . logic_name=eponine scaffold_9 . biological_region 424980 424980 0.999 - . logic_name=eponine scaffold_9 . biological_region 425312 425317 0.999 - . logic_name=eponine scaffold_9 . repeat_region 426576 432299 . ? . description=dust scaffold_9 ensembl protein_coding_gene 423130 425541 . + . ID=Phyra74702;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000105;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 423130 425541 . + . ID=Phyra74702;Parent=Phyra74702;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 423130 425541 . + 0 ID=Phyra74702;Parent=Phyra74702;rank=1 scaffold_9 . exon 423130 425541 . + . ID=Phyra74702.1;Parent=Phyra74702;constitutive=1;rank=1 scaffold_9 . repeat_region 437703 437726 . ? . description=trf scaffold_9 ensembl protein_coding_gene 433645 434654 . + . ID=Phyra74703;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000106;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 433645 434654 . + . ID=Phyra74703;Parent=Phyra74703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 433645 434535 . + 0 ID=Phyra74703;Parent=Phyra74703;rank=1 scaffold_9 . exon 433645 434535 . + . ID=Phyra74703.1;Parent=Phyra74703;constitutive=1;rank=1 scaffold_9 . CDS 434649 434654 . + 0 ID=Phyra74703;Parent=Phyra74703;rank=2 scaffold_9 . exon 434649 434654 . + . ID=Phyra74703.2;Parent=Phyra74703;constitutive=1;rank=2 scaffold_9 ensembl protein_coding_gene 434775 437198 . - . ID=Phyra74704;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000107;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 434775 437198 . - . ID=Phyra74704;Parent=Phyra74704;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 434775 437198 . - 0 ID=Phyra74704;Parent=Phyra74704;rank=1 scaffold_9 . exon 434775 437198 . - . ID=Phyra74704.1;Parent=Phyra74704;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 437395 439876 . + . ID=Phyra74705;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000108;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 437395 439876 . + . ID=Phyra74705;Parent=Phyra74705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 437395 437632 . + 0 ID=Phyra74705;Parent=Phyra74705;rank=1 scaffold_9 . exon 437395 437632 . + . ID=Phyra74705.1;Parent=Phyra74705;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 437733 439876 . + 0 ID=Phyra74705;Parent=Phyra74705;rank=2 scaffold_9 . exon 437733 439876 . + . ID=Phyra74705.2;Parent=Phyra74705;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . repeat_region 438624 438654 . ? . description=dust scaffold_9 . biological_region 439994 439999 0.999 + . logic_name=eponine scaffold_9 . biological_region 440033 440034 0.999 + . logic_name=eponine scaffold_9 . biological_region 440131 440133 0.999 - . logic_name=eponine scaffold_9 . repeat_region 440580 440600 . ? . description=dust scaffold_9 . repeat_region 448180 450164 . ? . description=dust scaffold_9 ensembl protein_coding_gene 444741 446909 . - . ID=Phyra71236;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000015;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 444741 446909 . - . ID=Phyra71236;Parent=Phyra71236;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 444741 446909 . - 0 ID=Phyra71236;Parent=Phyra71236;rank=1 scaffold_9 . exon 444741 446909 . - . ID=Phyra71236.1;Parent=Phyra71236;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 440025 440546 . + . ID=Phyra74706;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000109;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 440025 440546 . + . ID=Phyra74706;Parent=Phyra74706;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 440025 440546 . + 0 ID=Phyra74706;Parent=Phyra74706;rank=1 scaffold_9 . exon 440025 440546 . + . ID=Phyra74706.1;Parent=Phyra74706;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 440754 444563 . + . ID=Phyra74707;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000110;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 440754 444563 . + . ID=Phyra74707;Parent=Phyra74707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 440754 440936 . + 0 ID=Phyra74707;Parent=Phyra74707;rank=1 scaffold_9 . exon 440754 440936 . + . ID=Phyra74707.1;Parent=Phyra74707;constitutive=1;rank=1 scaffold_9 . CDS 441025 441803 . + 0 ID=Phyra74707;Parent=Phyra74707;rank=2 scaffold_9 . exon 441025 441803 . + . ID=Phyra74707.2;Parent=Phyra74707;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 441954 442272 . + 0 ID=Phyra74707;Parent=Phyra74707;rank=3 scaffold_9 . exon 441954 442272 . + . ID=Phyra74707.3;Parent=Phyra74707;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 442362 444563 . + 0 ID=Phyra74707;Parent=Phyra74707;rank=4 scaffold_9 . exon 442362 444563 . + . ID=Phyra74707.4;Parent=Phyra74707;constitutive=1;rank=4 scaffold_9 ensembl protein_coding_gene 451688 452464 . + . ID=Phyra74709;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000112;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 451688 452464 . + . ID=Phyra74709;Parent=Phyra74709;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 451688 452464 . + 0 ID=Phyra74709;Parent=Phyra74709;rank=1 scaffold_9 . exon 451688 452464 . + . ID=Phyra74709.1;Parent=Phyra74709;constitutive=1;rank=1 scaffold_9 . repeat_region 460490 460497 . ? . description=dust scaffold_9 . repeat_region 464240 464247 . ? . description=dust scaffold_9 . biological_region 465275 465280 0.999 + . logic_name=eponine scaffold_9 . biological_region 467086 467089 0.999 + . logic_name=eponine scaffold_9 . biological_region 467190 467194 0.999 - . logic_name=eponine scaffold_9 . repeat_region 467421 467428 . ? . description=dust scaffold_9 . biological_region 467952 467952 0.999 - . logic_name=eponine scaffold_9 . biological_region 468203 468206 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 465314 467398 . + . ID=Phyra74711;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000114;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 465314 467398 . + . ID=Phyra74711;Parent=Phyra74711;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 465314 465395 . + 0 ID=Phyra74711;Parent=Phyra74711;rank=1 scaffold_9 . exon 465314 465395 . + . ID=Phyra74711.1;Parent=Phyra74711;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 465471 465607 . + 0 ID=Phyra74711;Parent=Phyra74711;rank=2 scaffold_9 . exon 465471 465607 . + . ID=Phyra74711.2;Parent=Phyra74711;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 465687 466052 . + 0 ID=Phyra74711;Parent=Phyra74711;rank=3 scaffold_9 . exon 465687 466052 . + . ID=Phyra74711.3;Parent=Phyra74711;constitutive=1;rank=3 scaffold_9 . CDS 466115 467398 . + 0 ID=Phyra74711;Parent=Phyra74711;rank=4 scaffold_9 . exon 466115 467398 . + . ID=Phyra74711.4;Parent=Phyra74711;constitutive=1;rank=4 scaffold_9 ensembl protein_coding_gene 467658 468557 . + . ID=Phyra74712;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000115;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 467658 468557 . + . ID=Phyra74712;Parent=Phyra74712;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 467658 468016 . + 0 ID=Phyra74712;Parent=Phyra74712;rank=1 scaffold_9 . exon 467658 468016 . + . ID=Phyra74712.1;Parent=Phyra74712;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 468083 468557 . + 0 ID=Phyra74712;Parent=Phyra74712;rank=2 scaffold_9 . exon 468083 468557 . + . ID=Phyra74712.2;Parent=Phyra74712;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 ensembl protein_coding_gene 460578 465035 . - . ID=Phyra93883;biotype=protein_coding;external_name=C_scaffold_9000037;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 460578 465035 . - . ID=Phyra93883;Parent=Phyra93883;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 460578 460717 . - 0 ID=Phyra93883;Parent=Phyra93883;rank=9 scaffold_9 . exon 460578 460717 . - . ID=Phyra93883.9;Parent=Phyra93883;constitutive=1;ensembl_phase=1;rank=9 scaffold_9 . CDS 460763 461083 . - 0 ID=Phyra93883;Parent=Phyra93883;rank=8 scaffold_9 . exon 460763 461083 . - . ID=Phyra93883.8;Parent=Phyra93883;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_9 . CDS 461602 461701 . - 0 ID=Phyra93883;Parent=Phyra93883;rank=7 scaffold_9 . exon 461602 461701 . - . ID=Phyra93883.7;Parent=Phyra93883;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_9 . CDS 461825 461917 . - 0 ID=Phyra93883;Parent=Phyra93883;rank=6 scaffold_9 . exon 461825 461917 . - . ID=Phyra93883.6;Parent=Phyra93883;constitutive=1;rank=6 scaffold_9 . CDS 462059 462188 . - 0 ID=Phyra93883;Parent=Phyra93883;rank=5 scaffold_9 . exon 462059 462188 . - . ID=Phyra93883.5;Parent=Phyra93883;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 462543 462969 . - 0 ID=Phyra93883;Parent=Phyra93883;rank=4 scaffold_9 . exon 462543 462969 . - . ID=Phyra93883.4;Parent=Phyra93883;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_9 . CDS 463607 463861 . - 0 ID=Phyra93883;Parent=Phyra93883;rank=3 scaffold_9 . exon 463607 463861 . - . ID=Phyra93883.3;Parent=Phyra93883;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 464267 464640 . - 0 ID=Phyra93883;Parent=Phyra93883;rank=2 scaffold_9 . exon 464267 464640 . - . ID=Phyra93883.2;Parent=Phyra93883;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 464710 465035 . - 0 ID=Phyra93883;Parent=Phyra93883;rank=1 scaffold_9 . exon 464710 465035 . - . ID=Phyra93883.1;Parent=Phyra93883;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . repeat_region 472734 472753 . ? . description=trf scaffold_9 ensembl protein_coding_gene 468787 471662 . - . ID=Phyra74713;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000116;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 468787 471662 . - . ID=Phyra74713;Parent=Phyra74713;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 468787 468834 . - 0 ID=Phyra74713;Parent=Phyra74713;rank=3 scaffold_9 . exon 468787 468834 . - . ID=Phyra74713.3;Parent=Phyra74713;constitutive=1;rank=3 scaffold_9 . CDS 468891 469789 . - 0 ID=Phyra74713;Parent=Phyra74713;rank=2 scaffold_9 . exon 468891 469789 . - . ID=Phyra74713.2;Parent=Phyra74713;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 470045 471662 . - 0 ID=Phyra74713;Parent=Phyra74713;rank=1 scaffold_9 . exon 470045 471662 . - . ID=Phyra74713.1;Parent=Phyra74713;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 471872 472366 . - . ID=Phyra74714;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000117;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 471872 472366 . - . ID=Phyra74714;Parent=Phyra74714;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 471872 472366 . - 0 ID=Phyra74714;Parent=Phyra74714;rank=1 scaffold_9 . exon 471872 472366 . - . ID=Phyra74714.1;Parent=Phyra74714;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 472494 473260 . + . ID=Phyra74715;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000118;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 472494 473260 . + . ID=Phyra74715;Parent=Phyra74715;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 472494 472501 . + 0 ID=Phyra74715;Parent=Phyra74715;rank=1 scaffold_9 . exon 472494 472501 . + . ID=Phyra74715.1;Parent=Phyra74715;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 472555 473260 . + 0 ID=Phyra74715;Parent=Phyra74715;rank=2 scaffold_9 . exon 472555 473260 . + . ID=Phyra74715.2;Parent=Phyra74715;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 ensembl protein_coding_gene 474818 476629 . + . ID=Phyra74716;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000119;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 474818 476629 . + . ID=Phyra74716;Parent=Phyra74716;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 474818 476629 . + 0 ID=Phyra74716;Parent=Phyra74716;rank=1 scaffold_9 . exon 474818 476629 . + . ID=Phyra74716.1;Parent=Phyra74716;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 476752 478335 . - . ID=Phyra74717;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000120;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 476752 478335 . - . ID=Phyra74717;Parent=Phyra74717;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 476752 478335 . - 0 ID=Phyra74717;Parent=Phyra74717;rank=1 scaffold_9 . exon 476752 478335 . - . ID=Phyra74717.1;Parent=Phyra74717;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 473698 473973 . + . ID=Phyra93890;biotype=protein_coding;external_name=C_scaffold_9000044;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 473698 473973 . + . ID=Phyra93890;Parent=Phyra93890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 473698 473973 . + 0 ID=Phyra93890;Parent=Phyra93890;rank=1 scaffold_9 . exon 473698 473973 . + . ID=Phyra93890.1;Parent=Phyra93890;constitutive=1;rank=1 scaffold_9 . biological_region 479225 479225 0.999 - . logic_name=eponine scaffold_9 . biological_region 480560 480564 0.999 + . logic_name=eponine scaffold_9 . biological_region 480819 480821 0.999 - . logic_name=eponine scaffold_9 . biological_region 485298 485302 0.999 + . logic_name=eponine scaffold_9 . biological_region 485386 485387 0.999 - . logic_name=eponine scaffold_9 . biological_region 486463 486465 0.999 + . logic_name=eponine scaffold_9 . repeat_region 487316 487324 . ? . description=dust scaffold_9 ensembl protein_coding_gene 486038 487453 . - . ID=Phyra71237;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000016;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 486038 487453 . - . ID=Phyra71237;Parent=Phyra71237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 486038 486310 . - 0 ID=Phyra71237;Parent=Phyra71237;rank=2 scaffold_9 . exon 486038 486310 . - . ID=Phyra71237.2;Parent=Phyra71237;constitutive=1;rank=2 scaffold_9 . CDS 486389 487453 . - 0 ID=Phyra71237;Parent=Phyra71237;rank=1 scaffold_9 . exon 486389 487453 . - . ID=Phyra71237.1;Parent=Phyra71237;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 479087 480109 . - . ID=Phyra74718;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000121;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 479087 480109 . - . ID=Phyra74718;Parent=Phyra74718;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 479087 480109 . - 0 ID=Phyra74718;Parent=Phyra74718;rank=1 scaffold_9 . exon 479087 480109 . - . ID=Phyra74718.1;Parent=Phyra74718;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 481012 482484 . + . ID=Phyra74719;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000122;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 481012 482484 . + . ID=Phyra74719;Parent=Phyra74719;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 481012 482484 . + 0 ID=Phyra74719;Parent=Phyra74719;rank=1 scaffold_9 . exon 481012 482484 . + . ID=Phyra74719.1;Parent=Phyra74719;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 482667 485806 . + . ID=Phyra74720;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000123;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 482667 485806 . + . ID=Phyra74720;Parent=Phyra74720;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 482667 483131 . + 0 ID=Phyra74720;Parent=Phyra74720;rank=1 scaffold_9 . exon 482667 483131 . + . ID=Phyra74720.1;Parent=Phyra74720;constitutive=1;rank=1 scaffold_9 . CDS 483245 483334 . + 0 ID=Phyra74720;Parent=Phyra74720;rank=2 scaffold_9 . exon 483245 483334 . + . ID=Phyra74720.2;Parent=Phyra74720;constitutive=1;rank=2 scaffold_9 . CDS 483537 483695 . + 0 ID=Phyra74720;Parent=Phyra74720;rank=3 scaffold_9 . exon 483537 483695 . + . ID=Phyra74720.3;Parent=Phyra74720;constitutive=1;rank=3 scaffold_9 . CDS 483759 484493 . + 0 ID=Phyra74720;Parent=Phyra74720;rank=4 scaffold_9 . exon 483759 484493 . + . ID=Phyra74720.4;Parent=Phyra74720;constitutive=1;rank=4 scaffold_9 . CDS 485134 485739 . + 0 ID=Phyra74720;Parent=Phyra74720;rank=5 scaffold_9 . exon 485134 485739 . + . ID=Phyra74720.5;Parent=Phyra74720;constitutive=1;rank=5 scaffold_9 . CDS 485759 485806 . + 0 ID=Phyra74720;Parent=Phyra74720;rank=6 scaffold_9 . exon 485759 485806 . + . ID=Phyra74720.6;Parent=Phyra74720;constitutive=1;rank=6 scaffold_9 ensembl protein_coding_gene 489940 491584 . - . ID=Phyra71238;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000017;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 489940 491584 . - . ID=Phyra71238;Parent=Phyra71238;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 489940 490083 . - 0 ID=Phyra71238;Parent=Phyra71238;rank=8 scaffold_9 . exon 489940 490083 . - . ID=Phyra71238.8;Parent=Phyra71238;constitutive=1;rank=8 scaffold_9 . CDS 490161 490229 . - 0 ID=Phyra71238;Parent=Phyra71238;rank=7 scaffold_9 . exon 490161 490229 . - . ID=Phyra71238.7;Parent=Phyra71238;constitutive=1;rank=7 scaffold_9 . CDS 490317 490586 . - 0 ID=Phyra71238;Parent=Phyra71238;rank=6 scaffold_9 . exon 490317 490586 . - . ID=Phyra71238.6;Parent=Phyra71238;constitutive=1;rank=6 scaffold_9 . CDS 490655 490849 . - 0 ID=Phyra71238;Parent=Phyra71238;rank=5 scaffold_9 . exon 490655 490849 . - . ID=Phyra71238.5;Parent=Phyra71238;constitutive=1;rank=5 scaffold_9 . CDS 490925 490966 . - 0 ID=Phyra71238;Parent=Phyra71238;rank=4 scaffold_9 . exon 490925 490966 . - . ID=Phyra71238.4;Parent=Phyra71238;constitutive=1;rank=4 scaffold_9 . CDS 491051 491206 . - 0 ID=Phyra71238;Parent=Phyra71238;rank=3 scaffold_9 . exon 491051 491206 . - . ID=Phyra71238.3;Parent=Phyra71238;constitutive=1;rank=3 scaffold_9 . CDS 491272 491439 . - 0 ID=Phyra71238;Parent=Phyra71238;rank=2 scaffold_9 . exon 491272 491439 . - . ID=Phyra71238.2;Parent=Phyra71238;constitutive=1;rank=2 scaffold_9 . CDS 491522 491584 . - 0 ID=Phyra71238;Parent=Phyra71238;rank=1 scaffold_9 . exon 491522 491584 . - . ID=Phyra71238.1;Parent=Phyra71238;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 488198 489558 . + . ID=Phyra74722;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000125;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 488198 489558 . + . ID=Phyra74722;Parent=Phyra74722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 488198 488514 . + 0 ID=Phyra74722;Parent=Phyra74722;rank=1 scaffold_9 . exon 488198 488514 . + . ID=Phyra74722.1;Parent=Phyra74722;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 488586 489558 . + 0 ID=Phyra74722;Parent=Phyra74722;rank=2 scaffold_9 . exon 488586 489558 . + . ID=Phyra74722.2;Parent=Phyra74722;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . repeat_region 499537 499544 . ? . description=dust scaffold_9 . repeat_region 501858 501885 . ? . description=dust scaffold_9 . repeat_region 507439 507456 . ? . description=dust scaffold_9 . biological_region 507925 507927 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 516244 517669 . - . ID=Phyra54264;biotype=protein_coding;external_name=gwEuk.9.89.1;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 516244 517669 . - . ID=Phyra54264;Parent=Phyra54264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 516244 516504 . - 0 ID=Phyra54264;Parent=Phyra54264;rank=4 scaffold_9 . exon 516244 516504 . - . ID=Phyra54264.4;Parent=Phyra54264;constitutive=1;rank=4 scaffold_9 . CDS 516577 516686 . - 0 ID=Phyra54264;Parent=Phyra54264;rank=3 scaffold_9 . exon 516577 516686 . - . ID=Phyra54264.3;Parent=Phyra54264;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 516772 516917 . - 0 ID=Phyra54264;Parent=Phyra54264;rank=2 scaffold_9 . exon 516772 516917 . - . ID=Phyra54264.2;Parent=Phyra54264;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 516990 517669 . - 0 ID=Phyra54264;Parent=Phyra54264;rank=1 scaffold_9 . exon 516990 517669 . - . ID=Phyra54264.1;Parent=Phyra54264;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 509430 511123 . + . ID=Phyra74724;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000127;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 509430 511123 . + . ID=Phyra74724;Parent=Phyra74724;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 509430 510838 . + 0 ID=Phyra74724;Parent=Phyra74724;rank=1 scaffold_9 . exon 509430 510838 . + . ID=Phyra74724.1;Parent=Phyra74724;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 510919 511123 . + 0 ID=Phyra74724;Parent=Phyra74724;rank=2 scaffold_9 . exon 510919 511123 . + . ID=Phyra74724.2;Parent=Phyra74724;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 ensembl protein_coding_gene 511691 513648 . - . ID=Phyra93893;biotype=protein_coding;external_name=C_scaffold_9000047;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 511691 513648 . - . ID=Phyra93893;Parent=Phyra93893;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 511691 511931 . - 0 ID=Phyra93893;Parent=Phyra93893;rank=7 scaffold_9 . exon 511691 511931 . - . ID=Phyra93893.7;Parent=Phyra93893;constitutive=1;ensembl_phase=2;rank=7 scaffold_9 . CDS 511989 512038 . - 0 ID=Phyra93893;Parent=Phyra93893;rank=6 scaffold_9 . exon 511989 512038 . - . ID=Phyra93893.6;Parent=Phyra93893;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_9 . CDS 512130 512205 . - 0 ID=Phyra93893;Parent=Phyra93893;rank=5 scaffold_9 . exon 512130 512205 . - . ID=Phyra93893.5;Parent=Phyra93893;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 512275 512427 . - 0 ID=Phyra93893;Parent=Phyra93893;rank=4 scaffold_9 . exon 512275 512427 . - . ID=Phyra93893.4;Parent=Phyra93893;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_9 . CDS 512640 513016 . - 0 ID=Phyra93893;Parent=Phyra93893;rank=3 scaffold_9 . exon 512640 513016 . - . ID=Phyra93893.3;Parent=Phyra93893;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_9 . CDS 513102 513362 . - 0 ID=Phyra93893;Parent=Phyra93893;rank=2 scaffold_9 . exon 513102 513362 . - . ID=Phyra93893.2;Parent=Phyra93893;constitutive=1;rank=2 scaffold_9 . CDS 513481 513648 . - 0 ID=Phyra93893;Parent=Phyra93893;rank=1 scaffold_9 . exon 513481 513648 . - . ID=Phyra93893.1;Parent=Phyra93893;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 513816 516126 . + . ID=Phyra93894;biotype=protein_coding;external_name=C_scaffold_9000048;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 513816 516126 . + . ID=Phyra93894;Parent=Phyra93894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 513816 513983 . + 0 ID=Phyra93894;Parent=Phyra93894;rank=1 scaffold_9 . exon 513816 513983 . + . ID=Phyra93894.1;Parent=Phyra93894;constitutive=1;rank=1 scaffold_9 . CDS 514061 514126 . + 0 ID=Phyra93894;Parent=Phyra93894;rank=2 scaffold_9 . exon 514061 514126 . + . ID=Phyra93894.2;Parent=Phyra93894;constitutive=1;rank=2 scaffold_9 . CDS 514201 514710 . + 0 ID=Phyra93894;Parent=Phyra93894;rank=3 scaffold_9 . exon 514201 514710 . + . ID=Phyra93894.3;Parent=Phyra93894;constitutive=1;rank=3 scaffold_9 . CDS 515036 515591 . + 0 ID=Phyra93894;Parent=Phyra93894;rank=4 scaffold_9 . exon 515036 515591 . + . ID=Phyra93894.4;Parent=Phyra93894;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_9 . CDS 515662 515749 . + 0 ID=Phyra93894;Parent=Phyra93894;rank=5 scaffold_9 . exon 515662 515749 . + . ID=Phyra93894.5;Parent=Phyra93894;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_9 . CDS 515832 516126 . + 0 ID=Phyra93894;Parent=Phyra93894;rank=6 scaffold_9 . exon 515832 516126 . + . ID=Phyra93894.6;Parent=Phyra93894;constitutive=1;ensembl_phase=2;rank=6 scaffold_9 . biological_region 519071 519072 0.999 + . logic_name=eponine scaffold_9 . biological_region 519452 519456 0.999 - . logic_name=eponine scaffold_9 . biological_region 519487 519487 0.999 + . logic_name=eponine scaffold_9 . biological_region 519508 519511 0.999 + . logic_name=eponine scaffold_9 . biological_region 524591 524594 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 523540 524691 . + . ID=Phyra71239;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000018;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 523540 524691 . + . ID=Phyra71239;Parent=Phyra71239;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 523540 524691 . + 0 ID=Phyra71239;Parent=Phyra71239;rank=1 scaffold_9 . exon 523540 524691 . + . ID=Phyra71239.1;Parent=Phyra71239;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 518683 519689 . - . ID=Phyra74728;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000131;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 518683 519689 . - . ID=Phyra74728;Parent=Phyra74728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 518683 519589 . - 0 ID=Phyra74728;Parent=Phyra74728;rank=2 scaffold_9 . exon 518683 519589 . - . ID=Phyra74728.2;Parent=Phyra74728;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 519670 519689 . - 0 ID=Phyra74728;Parent=Phyra74728;rank=1 scaffold_9 . exon 519670 519689 . - . ID=Phyra74728.1;Parent=Phyra74728;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 525038 525438 . - . ID=Phyra74730;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000133;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 525038 525438 . - . ID=Phyra74730;Parent=Phyra74730;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 525038 525224 . - 0 ID=Phyra74730;Parent=Phyra74730;rank=2 scaffold_9 . exon 525038 525224 . - . ID=Phyra74730.2;Parent=Phyra74730;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 525281 525438 . - 0 ID=Phyra74730;Parent=Phyra74730;rank=1 scaffold_9 . exon 525281 525438 . - . ID=Phyra74730.1;Parent=Phyra74730;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 525634 526789 . + . ID=Phyra74731;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000134;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 525634 526789 . + . ID=Phyra74731;Parent=Phyra74731;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 525634 525734 . + 0 ID=Phyra74731;Parent=Phyra74731;rank=1 scaffold_9 . exon 525634 525734 . + . ID=Phyra74731.1;Parent=Phyra74731;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 525816 525875 . + 0 ID=Phyra74731;Parent=Phyra74731;rank=2 scaffold_9 . exon 525816 525875 . + . ID=Phyra74731.2;Parent=Phyra74731;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_9 . CDS 525935 526178 . + 0 ID=Phyra74731;Parent=Phyra74731;rank=3 scaffold_9 . exon 525935 526178 . + . ID=Phyra74731.3;Parent=Phyra74731;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 526251 526490 . + 0 ID=Phyra74731;Parent=Phyra74731;rank=4 scaffold_9 . exon 526251 526490 . + . ID=Phyra74731.4;Parent=Phyra74731;constitutive=1;rank=4 scaffold_9 . CDS 526565 526672 . + 0 ID=Phyra74731;Parent=Phyra74731;rank=5 scaffold_9 . exon 526565 526672 . + . ID=Phyra74731.5;Parent=Phyra74731;constitutive=1;rank=5 scaffold_9 . CDS 526754 526789 . + 0 ID=Phyra74731;Parent=Phyra74731;rank=6 scaffold_9 . exon 526754 526789 . + . ID=Phyra74731.6;Parent=Phyra74731;constitutive=1;rank=6 scaffold_9 . repeat_region 531286 531299 . ? . description=dust scaffold_9 . repeat_region 534331 534338 . ? . description=dust scaffold_9 . repeat_region 537016 537099 . ? . description=trf scaffold_9 ensembl protein_coding_gene 531951 532604 . + . ID=Phyra74732;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000135;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 531951 532604 . + . ID=Phyra74732;Parent=Phyra74732;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 531951 532604 . + 0 ID=Phyra74732;Parent=Phyra74732;rank=1 scaffold_9 . exon 531951 532604 . + . ID=Phyra74732.1;Parent=Phyra74732;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 538580 540361 . - . ID=Phyra74733;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000136;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 538580 540361 . - . ID=Phyra74733;Parent=Phyra74733;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 538580 539241 . - 0 ID=Phyra74733;Parent=Phyra74733;rank=3 scaffold_9 . exon 538580 539241 . - . ID=Phyra74733.3;Parent=Phyra74733;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 539389 539696 . - 0 ID=Phyra74733;Parent=Phyra74733;rank=2 scaffold_9 . exon 539389 539696 . - . ID=Phyra74733.2;Parent=Phyra74733;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 539721 540361 . - 0 ID=Phyra74733;Parent=Phyra74733;rank=1 scaffold_9 . exon 539721 540361 . - . ID=Phyra74733.1;Parent=Phyra74733;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 546627 547631 . + . ID=Phyra74734;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000137;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 546627 547631 . + . ID=Phyra74734;Parent=Phyra74734;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 546627 547631 . + 0 ID=Phyra74734;Parent=Phyra74734;rank=1 scaffold_9 . exon 546627 547631 . + . ID=Phyra74734.1;Parent=Phyra74734;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 547876 548586 . + . ID=Phyra74735;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000138;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 547876 548586 . + . ID=Phyra74735;Parent=Phyra74735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 547876 548079 . + 0 ID=Phyra74735;Parent=Phyra74735;rank=1 scaffold_9 . exon 547876 548079 . + . ID=Phyra74735.1;Parent=Phyra74735;constitutive=1;rank=1 scaffold_9 . CDS 548134 548586 . + 0 ID=Phyra74735;Parent=Phyra74735;rank=2 scaffold_9 ensembl protein_coding_gene 550700 551647 . + . ID=Phyra71240;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000019;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 550700 551647 . + . ID=Phyra71240;Parent=Phyra71240;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 550700 551647 . + 0 ID=Phyra71240;Parent=Phyra71240;rank=1 scaffold_9 . exon 550700 551647 . + . ID=Phyra71240.1;Parent=Phyra71240;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 551964 553100 . - . ID=Phyra71241;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000020;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 551964 553100 . - . ID=Phyra71241;Parent=Phyra71241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 551964 553100 . - 0 ID=Phyra71241;Parent=Phyra71241;rank=1 scaffold_9 . exon 551964 553100 . - . ID=Phyra71241.1;Parent=Phyra71241;constitutive=1;rank=1 scaffold_9 . exon 548134 548586 . + . ID=Phyra74735.2;Parent=Phyra74735;constitutive=1;rank=2 scaffold_9 . repeat_region 559223 559230 . ? . description=dust scaffold_9 . biological_region 560230 560230 0.999 + . logic_name=eponine scaffold_9 . biological_region 562563 562564 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 565460 573436 . - . ID=Phyra54280;biotype=protein_coding;external_name=gwEuk.9.105.1;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 565460 573436 . - . ID=Phyra54280;Parent=Phyra54280;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 565460 565807 . - 0 ID=Phyra54280;Parent=Phyra54280;rank=7 scaffold_9 . exon 565460 565807 . - . ID=Phyra54280.7;Parent=Phyra54280;constitutive=1;rank=7 scaffold_9 . CDS 565997 568052 . - 0 ID=Phyra54280;Parent=Phyra54280;rank=6 scaffold_9 . exon 565997 568052 . - . ID=Phyra54280.6;Parent=Phyra54280;constitutive=1;ensembl_phase=2;rank=6 scaffold_9 . CDS 568137 568381 . - 0 ID=Phyra54280;Parent=Phyra54280;rank=5 scaffold_9 . CDS 568562 568836 . - 0 ID=Phyra54280;Parent=Phyra54280;rank=4 scaffold_9 . CDS 568891 570621 . - 0 ID=Phyra54280;Parent=Phyra54280;rank=3 scaffold_9 . CDS 570892 571974 . - 0 ID=Phyra54280;Parent=Phyra54280;rank=2 scaffold_9 . CDS 572059 573436 . - 0 ID=Phyra54280;Parent=Phyra54280;rank=1 scaffold_9 ensembl protein_coding_gene 561566 562515 . + . ID=Phyra74739;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000142;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 561566 562515 . + . ID=Phyra74739;Parent=Phyra74739;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 561566 562359 . + 0 ID=Phyra74739;Parent=Phyra74739;rank=1 scaffold_9 . exon 561566 562359 . + . ID=Phyra74739.1;Parent=Phyra74739;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 562407 562515 . + 0 ID=Phyra74739;Parent=Phyra74739;rank=2 scaffold_9 . exon 562407 562515 . + . ID=Phyra74739.2;Parent=Phyra74739;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 ensembl protein_coding_gene 562719 565259 . - . ID=Phyra74740;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000143;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 562719 565259 . - . ID=Phyra74740;Parent=Phyra74740;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 562719 562916 . - 0 ID=Phyra74740;Parent=Phyra74740;rank=2 scaffold_9 . exon 562719 562916 . - . ID=Phyra74740.2;Parent=Phyra74740;constitutive=1;rank=2 scaffold_9 . CDS 562950 565259 . - 0 ID=Phyra74740;Parent=Phyra74740;rank=1 scaffold_9 . exon 562950 565259 . - . ID=Phyra74740.1;Parent=Phyra74740;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 559469 560951 . - . ID=Phyra93899;biotype=protein_coding;external_name=C_scaffold_9000053;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 559469 560951 . - . ID=Phyra93899;Parent=Phyra93899;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 559469 559585 . - 0 ID=Phyra93899;Parent=Phyra93899;rank=6 scaffold_9 . exon 559469 559585 . - . ID=Phyra93899.6;Parent=Phyra93899;constitutive=1;rank=6 scaffold_9 . CDS 559657 560316 . - 0 ID=Phyra93899;Parent=Phyra93899;rank=5 scaffold_9 . exon 559657 560316 . - . ID=Phyra93899.5;Parent=Phyra93899;constitutive=1;rank=5 scaffold_9 . CDS 560379 560450 . - 0 ID=Phyra93899;Parent=Phyra93899;rank=4 scaffold_9 . exon 560379 560450 . - . ID=Phyra93899.4;Parent=Phyra93899;constitutive=1;rank=4 scaffold_9 . CDS 560519 560662 . - 0 ID=Phyra93899;Parent=Phyra93899;rank=3 scaffold_9 . exon 560519 560662 . - . ID=Phyra93899.3;Parent=Phyra93899;constitutive=1;rank=3 scaffold_9 . CDS 560730 560867 . - 0 ID=Phyra93899;Parent=Phyra93899;rank=2 scaffold_9 . exon 560730 560867 . - . ID=Phyra93899.2;Parent=Phyra93899;constitutive=1;rank=2 scaffold_9 . CDS 560934 560951 . - 0 ID=Phyra93899;Parent=Phyra93899;rank=1 scaffold_9 . exon 560934 560951 . - . ID=Phyra93899.1;Parent=Phyra93899;constitutive=1;rank=1 scaffold_9 . repeat_region 568448 568477 . ? . description=trf scaffold_9 . exon 568137 568381 . - . ID=Phyra54280.5;Parent=Phyra54280;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_9 . exon 568562 568836 . - . ID=Phyra54280.4;Parent=Phyra54280;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . exon 568891 570621 . - . ID=Phyra54280.3;Parent=Phyra54280;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_9 . exon 570892 571974 . - . ID=Phyra54280.2;Parent=Phyra54280;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . exon 572059 573436 . - . ID=Phyra54280.1;Parent=Phyra54280;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 574955 575776 . + . ID=Phyra71243;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000022;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 574955 575776 . + . ID=Phyra71243;Parent=Phyra71243;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 574955 575776 . + 0 ID=Phyra71243;Parent=Phyra71243;rank=1 scaffold_9 . exon 574955 575776 . + . ID=Phyra71243.1;Parent=Phyra71243;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 575997 581632 . - . ID=Phyra74744;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000147;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 575997 581632 . - . ID=Phyra74744;Parent=Phyra74744;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 575997 578899 . - 0 ID=Phyra74744;Parent=Phyra74744;rank=9 scaffold_9 . exon 575997 578899 . - . ID=Phyra74744.9;Parent=Phyra74744;constitutive=1;ensembl_phase=1;rank=9 scaffold_9 . CDS 579054 579306 . - 0 ID=Phyra74744;Parent=Phyra74744;rank=8 scaffold_9 . CDS 579381 579781 . - 0 ID=Phyra74744;Parent=Phyra74744;rank=7 scaffold_9 . CDS 579900 580103 . - 0 ID=Phyra74744;Parent=Phyra74744;rank=6 scaffold_9 . CDS 580397 580503 . - 0 ID=Phyra74744;Parent=Phyra74744;rank=5 scaffold_9 . CDS 580593 580638 . - 0 ID=Phyra74744;Parent=Phyra74744;rank=4 scaffold_9 . CDS 580703 580880 . - 0 ID=Phyra74744;Parent=Phyra74744;rank=3 scaffold_9 . CDS 580943 581388 . - 0 ID=Phyra74744;Parent=Phyra74744;rank=2 scaffold_9 . CDS 581458 581632 . - 0 ID=Phyra74744;Parent=Phyra74744;rank=1 scaffold_9 . biological_region 578574 578575 0.999 + . logic_name=eponine scaffold_9 . biological_region 578633 578634 0.999 + . logic_name=eponine scaffold_9 . biological_region 578721 578723 0.999 - . logic_name=eponine scaffold_9 . biological_region 579953 579957 0.999 + . logic_name=eponine scaffold_9 . biological_region 581528 581531 0.999 + . logic_name=eponine scaffold_9 . biological_region 581555 581559 0.999 - . logic_name=eponine scaffold_9 . biological_region 581586 581586 0.999 + . logic_name=eponine scaffold_9 . biological_region 581629 581631 0.999 - . logic_name=eponine scaffold_9 . repeat_region 584570 584577 . ? . description=dust scaffold_9 . biological_region 585139 585140 0.999 - . logic_name=eponine scaffold_9 . exon 579054 579306 . - . ID=Phyra74744.8;Parent=Phyra74744;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_9 . exon 579381 579781 . - . ID=Phyra74744.7;Parent=Phyra74744;constitutive=1;ensembl_phase=1;rank=7 scaffold_9 . exon 579900 580103 . - . ID=Phyra74744.6;Parent=Phyra74744;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_9 . exon 580397 580503 . - . ID=Phyra74744.5;Parent=Phyra74744;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_9 . exon 580593 580638 . - . ID=Phyra74744.4;Parent=Phyra74744;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_9 . exon 580703 580880 . - . ID=Phyra74744.3;Parent=Phyra74744;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . exon 580943 581388 . - . ID=Phyra74744.2;Parent=Phyra74744;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . exon 581458 581632 . - . ID=Phyra74744.1;Parent=Phyra74744;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 587308 588642 . + . ID=Phyra74746;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000149;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 587308 588642 . + . ID=Phyra74746;Parent=Phyra74746;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 587308 587330 . + 0 ID=Phyra74746;Parent=Phyra74746;rank=1 scaffold_9 . exon 587308 587330 . + . ID=Phyra74746.1;Parent=Phyra74746;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 587395 587430 . + 0 ID=Phyra74746;Parent=Phyra74746;rank=2 scaffold_9 . exon 587395 587430 . + . ID=Phyra74746.2;Parent=Phyra74746;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_9 . CDS 587507 588066 . + 0 ID=Phyra74746;Parent=Phyra74746;rank=3 scaffold_9 . exon 587507 588066 . + . ID=Phyra74746.3;Parent=Phyra74746;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 588128 588642 . + 0 ID=Phyra74746;Parent=Phyra74746;rank=4 scaffold_9 ensembl protein_coding_gene 582560 587001 . - . ID=Phyra93903;biotype=protein_coding;external_name=C_scaffold_9000057;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 582560 587001 . - . ID=Phyra93903;Parent=Phyra93903;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 582560 582565 . - 0 ID=Phyra93903;Parent=Phyra93903;rank=16 scaffold_9 . exon 582560 582565 . - . ID=Phyra93903.16;Parent=Phyra93903;constitutive=1;rank=16 scaffold_9 . CDS 582831 583006 . - 0 ID=Phyra93903;Parent=Phyra93903;rank=15 scaffold_9 . exon 582831 583006 . - . ID=Phyra93903.15;Parent=Phyra93903;constitutive=1;ensembl_phase=1;rank=15 scaffold_9 . CDS 583055 583118 . - 0 ID=Phyra93903;Parent=Phyra93903;rank=14 scaffold_9 . exon 583055 583118 . - . ID=Phyra93903.14;Parent=Phyra93903;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_9 . CDS 583365 583528 . - 0 ID=Phyra93903;Parent=Phyra93903;rank=13 scaffold_9 . exon 583365 583528 . - . ID=Phyra93903.13;Parent=Phyra93903;constitutive=1;ensembl_phase=1;rank=13 scaffold_9 . CDS 583599 583691 . - 0 ID=Phyra93903;Parent=Phyra93903;rank=12 scaffold_9 . exon 583599 583691 . - . ID=Phyra93903.12;Parent=Phyra93903;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_9 . CDS 583755 583860 . - 0 ID=Phyra93903;Parent=Phyra93903;rank=11 scaffold_9 . exon 583755 583860 . - . ID=Phyra93903.11;Parent=Phyra93903;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_9 . CDS 583936 583995 . - 0 ID=Phyra93903;Parent=Phyra93903;rank=10 scaffold_9 . exon 583936 583995 . - . ID=Phyra93903.10;Parent=Phyra93903;constitutive=1;rank=10 scaffold_9 . CDS 584252 584539 . - 0 ID=Phyra93903;Parent=Phyra93903;rank=9 scaffold_9 . exon 584252 584539 . - . ID=Phyra93903.9;Parent=Phyra93903;constitutive=1;rank=9 scaffold_9 . CDS 584605 584957 . - 0 ID=Phyra93903;Parent=Phyra93903;rank=8 scaffold_9 . exon 584605 584957 . - . ID=Phyra93903.8;Parent=Phyra93903;constitutive=1;ensembl_phase=1;rank=8 scaffold_9 . CDS 585029 585121 . - 0 ID=Phyra93903;Parent=Phyra93903;rank=7 scaffold_9 . exon 585029 585121 . - . ID=Phyra93903.7;Parent=Phyra93903;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_9 . CDS 585184 585401 . - 0 ID=Phyra93903;Parent=Phyra93903;rank=6 scaffold_9 . exon 585184 585401 . - . ID=Phyra93903.6;Parent=Phyra93903;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_9 . CDS 585607 585740 . - 0 ID=Phyra93903;Parent=Phyra93903;rank=5 scaffold_9 . exon 585607 585740 . - . ID=Phyra93903.5;Parent=Phyra93903;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_9 . CDS 585811 586098 . - 0 ID=Phyra93903;Parent=Phyra93903;rank=4 scaffold_9 . exon 585811 586098 . - . ID=Phyra93903.4;Parent=Phyra93903;constitutive=1;rank=4 scaffold_9 . CDS 586170 586522 . - 0 ID=Phyra93903;Parent=Phyra93903;rank=3 scaffold_9 . exon 586170 586522 . - . ID=Phyra93903.3;Parent=Phyra93903;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 586602 586890 . - 0 ID=Phyra93903;Parent=Phyra93903;rank=2 scaffold_9 . exon 586602 586890 . - . ID=Phyra93903.2;Parent=Phyra93903;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 586915 587001 . - 0 ID=Phyra93903;Parent=Phyra93903;rank=1 scaffold_9 . exon 586915 587001 . - . ID=Phyra93903.1;Parent=Phyra93903;constitutive=1;rank=1 scaffold_9 . exon 588128 588642 . + . ID=Phyra74746.4;Parent=Phyra74746;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 ensembl protein_coding_gene 588867 589769 . - . ID=Phyra74747;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000150;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 588867 589769 . - . ID=Phyra74747;Parent=Phyra74747;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 588867 588902 . - 0 ID=Phyra74747;Parent=Phyra74747;rank=3 scaffold_9 . exon 588867 588902 . - . ID=Phyra74747.3;Parent=Phyra74747;constitutive=1;rank=3 scaffold_9 . CDS 588959 589432 . - 0 ID=Phyra74747;Parent=Phyra74747;rank=2 scaffold_9 . exon 588959 589432 . - . ID=Phyra74747.2;Parent=Phyra74747;constitutive=1;rank=2 scaffold_9 . CDS 589512 589769 . - 0 ID=Phyra74747;Parent=Phyra74747;rank=1 scaffold_9 . exon 589512 589769 . - . ID=Phyra74747.1;Parent=Phyra74747;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 592414 593797 . + . ID=Phyra74748;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000151;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 592414 593797 . + . ID=Phyra74748;Parent=Phyra74748;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 592414 592795 . + 0 ID=Phyra74748;Parent=Phyra74748;rank=1 scaffold_9 . exon 592414 592795 . + . ID=Phyra74748.1;Parent=Phyra74748;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 592885 593237 . + 0 ID=Phyra74748;Parent=Phyra74748;rank=2 scaffold_9 . exon 592885 593237 . + . ID=Phyra74748.2;Parent=Phyra74748;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 593308 593595 . + 0 ID=Phyra74748;Parent=Phyra74748;rank=3 scaffold_9 . exon 593308 593595 . + . ID=Phyra74748.3;Parent=Phyra74748;constitutive=1;rank=3 scaffold_9 . CDS 593660 593797 . + 0 ID=Phyra74748;Parent=Phyra74748;rank=4 scaffold_9 . exon 593660 593797 . + . ID=Phyra74748.4;Parent=Phyra74748;constitutive=1;rank=4 scaffold_9 . repeat_region 599919 599926 . ? . description=dust scaffold_9 . biological_region 605417 605422 0.999 + . logic_name=eponine scaffold_9 . biological_region 605501 605502 0.999 + . logic_name=eponine scaffold_9 . repeat_region 605730 605769 . ? . description=trf scaffold_9 ensembl protein_coding_gene 602438 603897 . - . ID=Phyra74749;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000152;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 602438 603897 . - . ID=Phyra74749;Parent=Phyra74749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 602438 602452 . - 0 ID=Phyra74749;Parent=Phyra74749;rank=5 scaffold_9 . exon 602438 602452 . - . ID=Phyra74749.5;Parent=Phyra74749;constitutive=1;rank=5 scaffold_9 . CDS 602508 603078 . - 0 ID=Phyra74749;Parent=Phyra74749;rank=4 scaffold_9 . exon 602508 603078 . - . ID=Phyra74749.4;Parent=Phyra74749;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 603422 603512 . - 0 ID=Phyra74749;Parent=Phyra74749;rank=3 scaffold_9 . exon 603422 603512 . - . ID=Phyra74749.3;Parent=Phyra74749;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_9 . CDS 603585 603758 . - 0 ID=Phyra74749;Parent=Phyra74749;rank=2 scaffold_9 . exon 603585 603758 . - . ID=Phyra74749.2;Parent=Phyra74749;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 603834 603897 . - 0 ID=Phyra74749;Parent=Phyra74749;rank=1 scaffold_9 . exon 603834 603897 . - . ID=Phyra74749.1;Parent=Phyra74749;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 606029 608149 . - . ID=Phyra74750;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000153;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 606029 608149 . - . ID=Phyra74750;Parent=Phyra74750;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 606029 608149 . - 0 ID=Phyra74750;Parent=Phyra74750;rank=1 scaffold_9 . exon 606029 608149 . - . ID=Phyra74750.1;Parent=Phyra74750;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 609917 610501 . + . ID=Phyra74751;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000154;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 609917 610501 . + . ID=Phyra74751;Parent=Phyra74751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 609917 610501 . + 0 ID=Phyra74751;Parent=Phyra74751;rank=1 scaffold_9 . exon 609917 610501 . + . ID=Phyra74751.1;Parent=Phyra74751;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 611026 611733 . + . ID=Phyra74752;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000155;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 611026 611733 . + . ID=Phyra74752;Parent=Phyra74752;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 611026 611733 . + 0 ID=Phyra74752;Parent=Phyra74752;rank=1 scaffold_9 . exon 611026 611733 . + . ID=Phyra74752.1;Parent=Phyra74752;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 612245 613567 . - . ID=Phyra74753;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000156;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 612245 613567 . - . ID=Phyra74753;Parent=Phyra74753;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 612245 612402 . - 0 ID=Phyra74753;Parent=Phyra74753;rank=2 scaffold_9 . exon 612245 612402 . - . ID=Phyra74753.2;Parent=Phyra74753;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 613153 613567 . - 0 ID=Phyra74753;Parent=Phyra74753;rank=1 scaffold_9 . exon 613153 613567 . - . ID=Phyra74753.1;Parent=Phyra74753;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 613930 617735 . + . ID=Phyra74754;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000157;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 613930 617735 . + . ID=Phyra74754;Parent=Phyra74754;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 613930 614665 . + 0 ID=Phyra74754;Parent=Phyra74754;rank=1 scaffold_9 . exon 613930 614665 . + . ID=Phyra74754.1;Parent=Phyra74754;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 614750 615372 . + 0 ID=Phyra74754;Parent=Phyra74754;rank=2 scaffold_9 . exon 614750 615372 . + . ID=Phyra74754.2;Parent=Phyra74754;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 615452 615655 . + 0 ID=Phyra74754;Parent=Phyra74754;rank=3 scaffold_9 . exon 615452 615655 . + . ID=Phyra74754.3;Parent=Phyra74754;constitutive=1;rank=3 scaffold_9 . CDS 615726 615859 . + 0 ID=Phyra74754;Parent=Phyra74754;rank=4 scaffold_9 . exon 615726 615859 . + . ID=Phyra74754.4;Parent=Phyra74754;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_9 . CDS 615972 616066 . + 0 ID=Phyra74754;Parent=Phyra74754;rank=5 scaffold_9 . exon 615972 616066 . + . ID=Phyra74754.5;Parent=Phyra74754;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 616148 616471 . + 0 ID=Phyra74754;Parent=Phyra74754;rank=6 scaffold_9 . exon 616148 616471 . + . ID=Phyra74754.6;Parent=Phyra74754;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_9 . CDS 616606 616838 . + 0 ID=Phyra74754;Parent=Phyra74754;rank=7 scaffold_9 . exon 616606 616838 . + . ID=Phyra74754.7;Parent=Phyra74754;constitutive=1;ensembl_phase=1;rank=7 scaffold_9 . CDS 616915 616992 . + 0 ID=Phyra74754;Parent=Phyra74754;rank=8 scaffold_9 . exon 616915 616992 . + . ID=Phyra74754.8;Parent=Phyra74754;constitutive=1;rank=8 scaffold_9 . CDS 617079 617387 . + 0 ID=Phyra74754;Parent=Phyra74754;rank=9 scaffold_9 . exon 617079 617387 . + . ID=Phyra74754.9;Parent=Phyra74754;constitutive=1;rank=9 scaffold_9 . CDS 617490 617735 . + 0 ID=Phyra74754;Parent=Phyra74754;rank=10 scaffold_9 . exon 617490 617735 . + . ID=Phyra74754.10;Parent=Phyra74754;constitutive=1;rank=10 scaffold_9 . biological_region 618610 618615 0.999 + . logic_name=eponine scaffold_9 . biological_region 618613 618616 0.999 - . logic_name=eponine scaffold_9 . biological_region 618684 618686 0.999 + . logic_name=eponine scaffold_9 . biological_region 624731 624731 0.999 + . logic_name=eponine scaffold_9 . biological_region 624841 624844 0.999 - . logic_name=eponine scaffold_9 . biological_region 624853 624856 0.999 - . logic_name=eponine scaffold_9 . biological_region 624895 624896 0.999 + . logic_name=eponine scaffold_9 . biological_region 625299 625301 0.999 - . logic_name=eponine scaffold_9 . biological_region 625688 625692 0.999 - . logic_name=eponine scaffold_9 . repeat_region 626239 626261 . ? . description=dust scaffold_9 ensembl protein_coding_gene 622511 624119 . - . ID=Phyra54286;biotype=protein_coding;external_name=gwEuk.9.111.1;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 622511 624119 . - . ID=Phyra54286;Parent=Phyra54286;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 622511 622576 . - 0 ID=Phyra54286;Parent=Phyra54286;rank=10 scaffold_9 . exon 622511 622576 . - . ID=Phyra54286.10;Parent=Phyra54286;constitutive=1;rank=10 scaffold_9 . CDS 622637 622720 . - 0 ID=Phyra54286;Parent=Phyra54286;rank=9 scaffold_9 . exon 622637 622720 . - . ID=Phyra54286.9;Parent=Phyra54286;constitutive=1;rank=9 scaffold_9 . CDS 622777 622866 . - 0 ID=Phyra54286;Parent=Phyra54286;rank=8 scaffold_9 . exon 622777 622866 . - . ID=Phyra54286.8;Parent=Phyra54286;constitutive=1;rank=8 scaffold_9 . CDS 622929 623165 . - 0 ID=Phyra54286;Parent=Phyra54286;rank=7 scaffold_9 . exon 622929 623165 . - . ID=Phyra54286.7;Parent=Phyra54286;constitutive=1;rank=7 scaffold_9 . CDS 623240 623352 . - 0 ID=Phyra54286;Parent=Phyra54286;rank=6 scaffold_9 . exon 623240 623352 . - . ID=Phyra54286.6;Parent=Phyra54286;constitutive=1;ensembl_phase=1;rank=6 scaffold_9 . CDS 623410 623568 . - 0 ID=Phyra54286;Parent=Phyra54286;rank=5 scaffold_9 . exon 623410 623568 . - . ID=Phyra54286.5;Parent=Phyra54286;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_9 . CDS 623633 623690 . - 0 ID=Phyra54286;Parent=Phyra54286;rank=4 scaffold_9 . exon 623633 623690 . - . ID=Phyra54286.4;Parent=Phyra54286;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_9 . CDS 623759 623834 . - 0 ID=Phyra54286;Parent=Phyra54286;rank=3 scaffold_9 . exon 623759 623834 . - . ID=Phyra54286.3;Parent=Phyra54286;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 623914 623992 . - 0 ID=Phyra54286;Parent=Phyra54286;rank=2 scaffold_9 . exon 623914 623992 . - . ID=Phyra54286.2;Parent=Phyra54286;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 624047 624119 . - 0 ID=Phyra54286;Parent=Phyra54286;rank=1 scaffold_9 . exon 624047 624119 . - . ID=Phyra54286.1;Parent=Phyra54286;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 618511 619299 . + . ID=Phyra74755;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000158;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 618511 619299 . + . ID=Phyra74755;Parent=Phyra74755;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 618511 619299 . + 0 ID=Phyra74755;Parent=Phyra74755;rank=1 scaffold_9 . exon 618511 619299 . + . ID=Phyra74755.1;Parent=Phyra74755;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 624777 626147 . + . ID=Phyra74757;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000160;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 624777 626147 . + . ID=Phyra74757;Parent=Phyra74757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 624777 626147 . + 0 ID=Phyra74757;Parent=Phyra74757;rank=1 scaffold_9 . exon 624777 626147 . + . ID=Phyra74757.1;Parent=Phyra74757;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 626344 627968 . - . ID=Phyra74758;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000161;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 626344 627968 . - . ID=Phyra74758;Parent=Phyra74758;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 626344 627897 . - 0 ID=Phyra74758;Parent=Phyra74758;rank=2 scaffold_9 . exon 626344 627897 . - . ID=Phyra74758.2;Parent=Phyra74758;constitutive=1;rank=2 scaffold_9 . CDS 627966 627968 . - 0 ID=Phyra74758;Parent=Phyra74758;rank=1 scaffold_9 . exon 627966 627968 . - . ID=Phyra74758.1;Parent=Phyra74758;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 629442 634112 . + . ID=Phyra74759;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000162;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 629442 634112 . + . ID=Phyra74759;Parent=Phyra74759;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 629442 634112 . + 0 ID=Phyra74759;Parent=Phyra74759;rank=1 scaffold_9 . exon 629442 634112 . + . ID=Phyra74759.1;Parent=Phyra74759;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 634199 635942 . - . ID=Phyra74760;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000163;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 634199 635942 . - . ID=Phyra74760;Parent=Phyra74760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 634199 634438 . - 0 ID=Phyra74760;Parent=Phyra74760;rank=3 scaffold_9 . exon 634199 634438 . - . ID=Phyra74760.3;Parent=Phyra74760;constitutive=1;rank=3 scaffold_9 . CDS 634512 634639 . - 0 ID=Phyra74760;Parent=Phyra74760;rank=2 scaffold_9 . exon 634512 634639 . - . ID=Phyra74760.2;Parent=Phyra74760;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 634823 635942 . - 0 ID=Phyra74760;Parent=Phyra74760;rank=1 scaffold_9 . exon 634823 635942 . - . ID=Phyra74760.1;Parent=Phyra74760;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . repeat_region 638919 638954 . ? . description=trf scaffold_9 . biological_region 640246 640250 0.999 + . logic_name=eponine scaffold_9 . repeat_region 641907 641936 . ? . description=trf scaffold_9 . biological_region 643475 643475 0.999 - . logic_name=eponine scaffold_9 . biological_region 643515 643516 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 638926 640917 . - . ID=Phyra74761;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000164;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 638926 640917 . - . ID=Phyra74761;Parent=Phyra74761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 638926 639938 . - 0 ID=Phyra74761;Parent=Phyra74761;rank=4 scaffold_9 . exon 638926 639938 . - . ID=Phyra74761.4;Parent=Phyra74761;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 640015 640622 . - 0 ID=Phyra74761;Parent=Phyra74761;rank=3 scaffold_9 . exon 640015 640622 . - . ID=Phyra74761.3;Parent=Phyra74761;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 640721 640766 . - 0 ID=Phyra74761;Parent=Phyra74761;rank=2 scaffold_9 . exon 640721 640766 . - . ID=Phyra74761.2;Parent=Phyra74761;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 640791 640917 . - 0 ID=Phyra74761;Parent=Phyra74761;rank=1 scaffold_9 . exon 640791 640917 . - . ID=Phyra74761.1;Parent=Phyra74761;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 642288 647386 . + . ID=Phyra93907;biotype=protein_coding;external_name=C_scaffold_9000061;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 642288 647386 . + . ID=Phyra93907;Parent=Phyra93907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 642288 642449 . + 0 ID=Phyra93907;Parent=Phyra93907;rank=1 scaffold_9 . exon 642288 642449 . + . ID=Phyra93907.1;Parent=Phyra93907;constitutive=1;rank=1 scaffold_9 . CDS 642654 643028 . + 0 ID=Phyra93907;Parent=Phyra93907;rank=2 scaffold_9 . exon 642654 643028 . + . ID=Phyra93907.2;Parent=Phyra93907;constitutive=1;rank=2 scaffold_9 . CDS 643093 643112 . + 0 ID=Phyra93907;Parent=Phyra93907;rank=3 scaffold_9 . exon 643093 643112 . + . ID=Phyra93907.3;Parent=Phyra93907;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_9 . CDS 643270 643798 . + 0 ID=Phyra93907;Parent=Phyra93907;rank=4 scaffold_9 . exon 643270 643798 . + . ID=Phyra93907.4;Parent=Phyra93907;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 643850 644480 . + 0 ID=Phyra93907;Parent=Phyra93907;rank=5 scaffold_9 . exon 643850 644480 . + . ID=Phyra93907.5;Parent=Phyra93907;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_9 . CDS 644529 644729 . + 0 ID=Phyra93907;Parent=Phyra93907;rank=6 scaffold_9 . exon 644529 644729 . + . ID=Phyra93907.6;Parent=Phyra93907;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_9 . CDS 645024 645095 . + 0 ID=Phyra93907;Parent=Phyra93907;rank=7 scaffold_9 . exon 645024 645095 . + . ID=Phyra93907.7;Parent=Phyra93907;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_9 . CDS 645267 645607 . + 0 ID=Phyra93907;Parent=Phyra93907;rank=8 scaffold_9 . exon 645267 645607 . + . ID=Phyra93907.8;Parent=Phyra93907;constitutive=1;ensembl_phase=1;rank=8 scaffold_9 . CDS 645875 646154 . + 0 ID=Phyra93907;Parent=Phyra93907;rank=9 scaffold_9 . exon 645875 646154 . + . ID=Phyra93907.9;Parent=Phyra93907;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_9 . CDS 646344 646966 . + 0 ID=Phyra93907;Parent=Phyra93907;rank=10 scaffold_9 . exon 646344 646966 . + . ID=Phyra93907.10;Parent=Phyra93907;constitutive=1;ensembl_phase=1;rank=10 scaffold_9 . CDS 647060 647386 . + 0 ID=Phyra93907;Parent=Phyra93907;rank=11 scaffold_9 . exon 647060 647386 . + . ID=Phyra93907.11;Parent=Phyra93907;constitutive=1;rank=11 scaffold_9 . repeat_region 650532 650584 . ? . description=dust scaffold_9 . repeat_region 653225 653239 . ? . description=dust scaffold_9 . repeat_region 653905 653914 . ? . description=dust scaffold_9 . repeat_region 655154 655162 . ? . description=dust scaffold_9 ensembl tRNA_gene 653346 653412 . - . ID=EPrPRAG00000000078;biotype=tRNA;description=tRNA-Phe for anticodon AAA [Source:TRNASCAN_SE%3BAcc:tRNA-Phe];external_name=tRNA-Phe;logic_name=ncrna_eg scaffold_9 ensembl transcript 653346 653412 . - . ID=EPrPRAT00000000078;Parent=EPrPRAG00000000078;biotype=tRNA;logic_name=ncrna_eg scaffold_9 . exon 653346 653412 . - . ID=EPrPRAE00000000078;Parent=EPrPRAT00000000078;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 649002 650400 . - . ID=Phyra54297;biotype=protein_coding;external_name=gwEuk.9.122.1;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 649002 650400 . - . ID=Phyra54297;Parent=Phyra54297;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 649002 650141 . - 0 ID=Phyra54297;Parent=Phyra54297;rank=2 scaffold_9 . exon 649002 650141 . - . ID=Phyra54297.2;Parent=Phyra54297;constitutive=1;rank=2 scaffold_9 . CDS 650230 650400 . - 0 ID=Phyra54297;Parent=Phyra54297;rank=1 scaffold_9 . exon 650230 650400 . - . ID=Phyra54297.1;Parent=Phyra54297;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 651143 653186 . + . ID=Phyra74764;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000167;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 651143 653186 . + . ID=Phyra74764;Parent=Phyra74764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 651143 651243 . + 0 ID=Phyra74764;Parent=Phyra74764;rank=1 scaffold_9 . exon 651143 651243 . + . ID=Phyra74764.1;Parent=Phyra74764;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 651577 652181 . + 0 ID=Phyra74764;Parent=Phyra74764;rank=2 scaffold_9 . exon 651577 652181 . + . ID=Phyra74764.2;Parent=Phyra74764;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 652345 653186 . + 0 ID=Phyra74764;Parent=Phyra74764;rank=3 scaffold_9 . exon 652345 653186 . + . ID=Phyra74764.3;Parent=Phyra74764;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 ensembl protein_coding_gene 654162 655572 . + . ID=Phyra74765;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000168;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 654162 655572 . + . ID=Phyra74765;Parent=Phyra74765;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 654162 655004 . + 0 ID=Phyra74765;Parent=Phyra74765;rank=1 scaffold_9 . exon 654162 655004 . + . ID=Phyra74765.1;Parent=Phyra74765;constitutive=1;rank=1 scaffold_9 . CDS 655387 655572 . + 0 ID=Phyra74765;Parent=Phyra74765;rank=2 scaffold_9 . exon 655387 655572 . + . ID=Phyra74765.2;Parent=Phyra74765;constitutive=1;rank=2 scaffold_9 ensembl protein_coding_gene 656525 661448 . - . ID=Phyra74766;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000169;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 656525 661448 . - . ID=Phyra74766;Parent=Phyra74766;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 656525 656532 . - 0 ID=Phyra74766;Parent=Phyra74766;rank=15 scaffold_9 . exon 656525 656532 . - . ID=Phyra74766.15;Parent=Phyra74766;constitutive=1;ensembl_phase=1;rank=15 scaffold_9 . CDS 656631 657257 . - 0 ID=Phyra74766;Parent=Phyra74766;rank=14 scaffold_9 . exon 656631 657257 . - . ID=Phyra74766.14;Parent=Phyra74766;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_9 . CDS 657421 657624 . - 0 ID=Phyra74766;Parent=Phyra74766;rank=13 scaffold_9 . exon 657421 657624 . - . ID=Phyra74766.13;Parent=Phyra74766;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_9 . CDS 657690 657944 . - 0 ID=Phyra74766;Parent=Phyra74766;rank=12 scaffold_9 . CDS 658011 658123 . - 0 ID=Phyra74766;Parent=Phyra74766;rank=11 scaffold_9 . CDS 658194 658756 . - 0 ID=Phyra74766;Parent=Phyra74766;rank=10 scaffold_9 . CDS 658822 659002 . - 0 ID=Phyra74766;Parent=Phyra74766;rank=9 scaffold_9 . CDS 659086 659132 . - 0 ID=Phyra74766;Parent=Phyra74766;rank=8 scaffold_9 . CDS 659205 659427 . - 0 ID=Phyra74766;Parent=Phyra74766;rank=7 scaffold_9 . CDS 659504 659718 . - 0 ID=Phyra74766;Parent=Phyra74766;rank=6 scaffold_9 . CDS 659992 660068 . - 0 ID=Phyra74766;Parent=Phyra74766;rank=5 scaffold_9 . CDS 660223 660284 . - 0 ID=Phyra74766;Parent=Phyra74766;rank=4 scaffold_9 . CDS 660578 661118 . - 0 ID=Phyra74766;Parent=Phyra74766;rank=3 scaffold_9 . CDS 661180 661377 . - 0 ID=Phyra74766;Parent=Phyra74766;rank=2 scaffold_9 . CDS 661442 661448 . - 0 ID=Phyra74766;Parent=Phyra74766;rank=1 scaffold_9 . repeat_region 659552 659577 . ? . description=trf scaffold_9 . biological_region 660778 660779 0.999 - . logic_name=eponine scaffold_9 . repeat_region 661448 661566 . ? . description=trf scaffold_9 . repeat_region 664792 664811 . ? . description=trf scaffold_9 . biological_region 667227 667229 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 667246 669061 . - . ID=Phyra54299;biotype=protein_coding;external_name=gwEuk.9.124.1;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 667246 669061 . - . ID=Phyra54299;Parent=Phyra54299;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 667246 667696 . - 0 ID=Phyra54299;Parent=Phyra54299;rank=6 scaffold_9 . exon 667246 667696 . - . ID=Phyra54299.6;Parent=Phyra54299;constitutive=1;ensembl_phase=2;rank=6 scaffold_9 . CDS 667826 668182 . - 0 ID=Phyra54299;Parent=Phyra54299;rank=5 scaffold_9 . CDS 668251 668528 . - 0 ID=Phyra54299;Parent=Phyra54299;rank=4 scaffold_9 . CDS 668600 668687 . - 0 ID=Phyra54299;Parent=Phyra54299;rank=3 scaffold_9 . CDS 668763 668846 . - 0 ID=Phyra54299;Parent=Phyra54299;rank=2 scaffold_9 . CDS 668937 669061 . - 0 ID=Phyra54299;Parent=Phyra54299;rank=1 scaffold_9 . exon 657690 657944 . - . ID=Phyra74766.12;Parent=Phyra74766;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_9 . exon 658011 658123 . - . ID=Phyra74766.11;Parent=Phyra74766;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_9 . exon 658194 658756 . - . ID=Phyra74766.10;Parent=Phyra74766;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_9 . exon 658822 659002 . - . ID=Phyra74766.9;Parent=Phyra74766;constitutive=1;ensembl_phase=2;rank=9 scaffold_9 . exon 659086 659132 . - . ID=Phyra74766.8;Parent=Phyra74766;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_9 . exon 659205 659427 . - . ID=Phyra74766.7;Parent=Phyra74766;constitutive=1;ensembl_phase=2;rank=7 scaffold_9 . exon 659504 659718 . - . ID=Phyra74766.6;Parent=Phyra74766;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_9 . exon 659992 660068 . - . ID=Phyra74766.5;Parent=Phyra74766;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 . exon 660223 660284 . - . ID=Phyra74766.4;Parent=Phyra74766;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_9 . exon 660578 661118 . - . ID=Phyra74766.3;Parent=Phyra74766;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_9 . exon 661180 661377 . - . ID=Phyra74766.2;Parent=Phyra74766;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . exon 661442 661448 . - . ID=Phyra74766.1;Parent=Phyra74766;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 663335 664236 . - . ID=Phyra74768;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000171;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 663335 664236 . - . ID=Phyra74768;Parent=Phyra74768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 663335 663747 . - 0 ID=Phyra74768;Parent=Phyra74768;rank=3 scaffold_9 . exon 663335 663747 . - . ID=Phyra74768.3;Parent=Phyra74768;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 663806 663881 . - 0 ID=Phyra74768;Parent=Phyra74768;rank=2 scaffold_9 . exon 663806 663881 . - . ID=Phyra74768.2;Parent=Phyra74768;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 664063 664236 . - 0 ID=Phyra74768;Parent=Phyra74768;rank=1 scaffold_9 . exon 664063 664236 . - . ID=Phyra74768.1;Parent=Phyra74768;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 661747 663093 . + . ID=Phyra93910;biotype=protein_coding;external_name=C_scaffold_9000064;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 661747 663093 . + . ID=Phyra93910;Parent=Phyra93910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 661747 663093 . + 0 ID=Phyra93910;Parent=Phyra93910;rank=1 scaffold_9 . exon 661747 663093 . + . ID=Phyra93910.1;Parent=Phyra93910;constitutive=1;rank=1 scaffold_9 . repeat_region 668892 668913 . ? . description=dust scaffold_9 . repeat_region 675324 675343 . ? . description=dust scaffold_9 . exon 667826 668182 . - . ID=Phyra54299.5;Parent=Phyra54299;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_9 . exon 668251 668528 . - . ID=Phyra54299.4;Parent=Phyra54299;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_9 . exon 668600 668687 . - . ID=Phyra54299.3;Parent=Phyra54299;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . exon 668763 668846 . - . ID=Phyra54299.2;Parent=Phyra54299;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_9 . exon 668937 669061 . - . ID=Phyra54299.1;Parent=Phyra54299;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 676404 677157 . + . ID=Phyra71244;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000023;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 676404 677157 . + . ID=Phyra71244;Parent=Phyra71244;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 676404 676551 . + 0 ID=Phyra71244;Parent=Phyra71244;rank=1 scaffold_9 . exon 676404 676551 . + . ID=Phyra71244.1;Parent=Phyra71244;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 676760 677157 . + 0 ID=Phyra71244;Parent=Phyra71244;rank=2 scaffold_9 . exon 676760 677157 . + . ID=Phyra71244.2;Parent=Phyra71244;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 ensembl protein_coding_gene 669299 671293 . - . ID=Phyra74770;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000173;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 669299 671293 . - . ID=Phyra74770;Parent=Phyra74770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 669299 671293 . - 0 ID=Phyra74770;Parent=Phyra74770;rank=1 scaffold_9 . exon 669299 671293 . - . ID=Phyra74770.1;Parent=Phyra74770;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 671909 673069 . + . ID=Phyra74771;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000174;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 671909 673069 . + . ID=Phyra74771;Parent=Phyra74771;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 671909 671983 . + 0 ID=Phyra74771;Parent=Phyra74771;rank=1 scaffold_9 . exon 671909 671983 . + . ID=Phyra74771.1;Parent=Phyra74771;constitutive=1;rank=1 scaffold_9 . CDS 672051 672117 . + 0 ID=Phyra74771;Parent=Phyra74771;rank=2 scaffold_9 . exon 672051 672117 . + . ID=Phyra74771.2;Parent=Phyra74771;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 672183 673069 . + 0 ID=Phyra74771;Parent=Phyra74771;rank=3 scaffold_9 . exon 672183 673069 . + . ID=Phyra74771.3;Parent=Phyra74771;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 ensembl protein_coding_gene 673359 675795 . - . ID=Phyra93913;biotype=protein_coding;external_name=C_scaffold_9000067;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 673359 675795 . - . ID=Phyra93913;Parent=Phyra93913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 673359 673526 . - 0 ID=Phyra93913;Parent=Phyra93913;rank=8 scaffold_9 . exon 673359 673526 . - . ID=Phyra93913.8;Parent=Phyra93913;constitutive=1;rank=8 scaffold_9 . CDS 673614 674063 . - 0 ID=Phyra93913;Parent=Phyra93913;rank=7 scaffold_9 . exon 673614 674063 . - . ID=Phyra93913.7;Parent=Phyra93913;constitutive=1;rank=7 scaffold_9 . CDS 674173 674283 . - 0 ID=Phyra93913;Parent=Phyra93913;rank=6 scaffold_9 . exon 674173 674283 . - . ID=Phyra93913.6;Parent=Phyra93913;constitutive=1;rank=6 scaffold_9 . CDS 674535 674960 . - 0 ID=Phyra93913;Parent=Phyra93913;rank=5 scaffold_9 . exon 674535 674960 . - . ID=Phyra93913.5;Parent=Phyra93913;constitutive=1;rank=5 scaffold_9 . CDS 675032 675123 . - 0 ID=Phyra93913;Parent=Phyra93913;rank=4 scaffold_9 . exon 675032 675123 . - . ID=Phyra93913.4;Parent=Phyra93913;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 675224 675284 . - 0 ID=Phyra93913;Parent=Phyra93913;rank=3 scaffold_9 . exon 675224 675284 . - . ID=Phyra93913.3;Parent=Phyra93913;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 675374 675607 . - 0 ID=Phyra93913;Parent=Phyra93913;rank=2 scaffold_9 . exon 675374 675607 . - . ID=Phyra93913.2;Parent=Phyra93913;constitutive=1;rank=2 scaffold_9 . CDS 675700 675795 . - 0 ID=Phyra93913;Parent=Phyra93913;rank=1 scaffold_9 . exon 675700 675795 . - . ID=Phyra93913.1;Parent=Phyra93913;constitutive=1;rank=1 scaffold_9 . biological_region 681070 681072 0.999 - . logic_name=eponine scaffold_9 . biological_region 681766 681766 0.999 + . logic_name=eponine scaffold_9 . repeat_region 683894 683913 . ? . description=trf scaffold_9 ensembl protein_coding_gene 678588 679341 . + . ID=Phyra71245;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000024;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 678588 679341 . + . ID=Phyra71245;Parent=Phyra71245;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 678588 678735 . + 0 ID=Phyra71245;Parent=Phyra71245;rank=1 scaffold_9 . exon 678588 678735 . + . ID=Phyra71245.1;Parent=Phyra71245;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 678944 679341 . + 0 ID=Phyra71245;Parent=Phyra71245;rank=2 scaffold_9 . exon 678944 679341 . + . ID=Phyra71245.2;Parent=Phyra71245;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 ensembl protein_coding_gene 681388 681887 . - . ID=Phyra71246;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000025;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 681388 681887 . - . ID=Phyra71246;Parent=Phyra71246;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 681388 681531 . - 0 ID=Phyra71246;Parent=Phyra71246;rank=3 scaffold_9 . exon 681388 681531 . - . ID=Phyra71246.3;Parent=Phyra71246;constitutive=1;rank=3 scaffold_9 . CDS 681614 681696 . - 0 ID=Phyra71246;Parent=Phyra71246;rank=2 scaffold_9 . exon 681614 681696 . - . ID=Phyra71246.2;Parent=Phyra71246;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 681767 681887 . - 0 ID=Phyra71246;Parent=Phyra71246;rank=1 scaffold_9 . exon 681767 681887 . - . ID=Phyra71246.1;Parent=Phyra71246;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 679675 680229 . - . ID=Phyra74775;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000178;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 679675 680229 . - . ID=Phyra74775;Parent=Phyra74775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 679675 680229 . - 0 ID=Phyra74775;Parent=Phyra74775;rank=1 scaffold_9 . exon 679675 680229 . - . ID=Phyra74775.1;Parent=Phyra74775;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 682038 683266 . + . ID=Phyra74777;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000180;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 682038 683266 . + . ID=Phyra74777;Parent=Phyra74777;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 682038 682189 . + 0 ID=Phyra74777;Parent=Phyra74777;rank=1 scaffold_9 . exon 682038 682189 . + . ID=Phyra74777.1;Parent=Phyra74777;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 682249 682663 . + 0 ID=Phyra74777;Parent=Phyra74777;rank=2 scaffold_9 . exon 682249 682663 . + . ID=Phyra74777.2;Parent=Phyra74777;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 682733 683266 . + 0 ID=Phyra74777;Parent=Phyra74777;rank=3 scaffold_9 . exon 682733 683266 . + . ID=Phyra74777.3;Parent=Phyra74777;constitutive=1;rank=3 scaffold_9 ensembl protein_coding_gene 683827 687015 . - . ID=Phyra74778;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000181;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 683827 687015 . - . ID=Phyra74778;Parent=Phyra74778;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 683827 685176 . - 0 ID=Phyra74778;Parent=Phyra74778;rank=7 scaffold_9 . exon 683827 685176 . - . ID=Phyra74778.7;Parent=Phyra74778;constitutive=1;rank=7 scaffold_9 . CDS 685249 685336 . - 0 ID=Phyra74778;Parent=Phyra74778;rank=6 scaffold_9 . exon 685249 685336 . - . ID=Phyra74778.6;Parent=Phyra74778;constitutive=1;ensembl_phase=2;rank=6 scaffold_9 . CDS 685422 685624 . - 0 ID=Phyra74778;Parent=Phyra74778;rank=5 scaffold_9 . exon 685422 685624 . - . ID=Phyra74778.5;Parent=Phyra74778;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_9 . CDS 685698 685781 . - 0 ID=Phyra74778;Parent=Phyra74778;rank=4 scaffold_9 . exon 685698 685781 . - . ID=Phyra74778.4;Parent=Phyra74778;constitutive=1;rank=4 scaffold_9 . CDS 685859 686057 . - 0 ID=Phyra74778;Parent=Phyra74778;rank=3 scaffold_9 . exon 685859 686057 . - . ID=Phyra74778.3;Parent=Phyra74778;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 686309 686776 . - 0 ID=Phyra74778;Parent=Phyra74778;rank=2 scaffold_9 . exon 686309 686776 . - . ID=Phyra74778.2;Parent=Phyra74778;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_9 . CDS 686852 687015 . - 0 ID=Phyra74778;Parent=Phyra74778;rank=1 scaffold_9 . exon 686852 687015 . - . ID=Phyra74778.1;Parent=Phyra74778;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 687210 687881 . + . ID=Phyra74779;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000182;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 687210 687881 . + . ID=Phyra74779;Parent=Phyra74779;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 687210 687881 . + 0 ID=Phyra74779;Parent=Phyra74779;rank=1 scaffold_9 . exon 687210 687881 . + . ID=Phyra74779.1;Parent=Phyra74779;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 688000 688983 . - . ID=Phyra71247;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_9000026;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 688000 688983 . - . ID=Phyra71247;Parent=Phyra71247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 688000 688983 . - 0 ID=Phyra71247;Parent=Phyra71247;rank=1 scaffold_9 . exon 688000 688983 . - . ID=Phyra71247.1;Parent=Phyra71247;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 689124 690404 . - . ID=Phyra74781;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000184;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 689124 690404 . - . ID=Phyra74781;Parent=Phyra74781;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 689124 690263 . - 0 ID=Phyra74781;Parent=Phyra74781;rank=2 scaffold_9 . exon 689124 690263 . - . ID=Phyra74781.2;Parent=Phyra74781;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 690329 690404 . - 0 ID=Phyra74781;Parent=Phyra74781;rank=1 scaffold_9 . exon 690329 690404 . - . ID=Phyra74781.1;Parent=Phyra74781;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 690706 692088 . + . ID=Phyra74782;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000185;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 690706 692088 . + . ID=Phyra74782;Parent=Phyra74782;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 690706 692088 . + 0 ID=Phyra74782;Parent=Phyra74782;rank=1 scaffold_9 . exon 690706 692088 . + . ID=Phyra74782.1;Parent=Phyra74782;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 692462 695184 . - . ID=Phyra74783;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000186;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 692462 695184 . - . ID=Phyra74783;Parent=Phyra74783;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 692462 693104 . - 0 ID=Phyra74783;Parent=Phyra74783;rank=9 scaffold_9 . exon 692462 693104 . - . ID=Phyra74783.9;Parent=Phyra74783;constitutive=1;ensembl_phase=2;rank=9 scaffold_9 . CDS 693166 693272 . - 0 ID=Phyra74783;Parent=Phyra74783;rank=8 scaffold_9 . exon 693166 693272 . - . ID=Phyra74783.8;Parent=Phyra74783;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_9 . CDS 693343 693413 . - 0 ID=Phyra74783;Parent=Phyra74783;rank=7 scaffold_9 . exon 693343 693413 . - . ID=Phyra74783.7;Parent=Phyra74783;constitutive=1;ensembl_phase=1;rank=7 scaffold_9 . CDS 693500 693582 . - 0 ID=Phyra74783;Parent=Phyra74783;rank=6 scaffold_9 . exon 693500 693582 . - . ID=Phyra74783.6;Parent=Phyra74783;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_9 . CDS 693645 693700 . - 0 ID=Phyra74783;Parent=Phyra74783;rank=5 scaffold_9 . exon 693645 693700 . - . ID=Phyra74783.5;Parent=Phyra74783;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_9 . CDS 693777 693987 . - 0 ID=Phyra74783;Parent=Phyra74783;rank=4 scaffold_9 . exon 693777 693987 . - . ID=Phyra74783.4;Parent=Phyra74783;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 694079 694157 . - 0 ID=Phyra74783;Parent=Phyra74783;rank=3 scaffold_9 . exon 694079 694157 . - . ID=Phyra74783.3;Parent=Phyra74783;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_9 . CDS 694228 694977 . - 0 ID=Phyra74783;Parent=Phyra74783;rank=2 scaffold_9 . exon 694228 694977 . - . ID=Phyra74783.2;Parent=Phyra74783;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 695040 695184 . - 0 ID=Phyra74783;Parent=Phyra74783;rank=1 scaffold_9 . exon 695040 695184 . - . ID=Phyra74783.1;Parent=Phyra74783;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 696847 699081 . - . ID=Phyra74784;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000187;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 696847 699081 . - . ID=Phyra74784;Parent=Phyra74784;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 696847 698738 . - 0 ID=Phyra74784;Parent=Phyra74784;rank=2 scaffold_9 . exon 696847 698738 . - . ID=Phyra74784.2;Parent=Phyra74784;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 699069 699081 . - 0 ID=Phyra74784;Parent=Phyra74784;rank=1 scaffold_9 . biological_region 698165 698170 0.999 + . logic_name=eponine scaffold_9 . biological_region 699945 699947 0.999 + . logic_name=eponine scaffold_9 . biological_region 700952 700957 0.999 - . logic_name=eponine scaffold_9 . biological_region 702207 702210 0.999 + . logic_name=eponine scaffold_9 . biological_region 702295 702297 0.999 - . logic_name=eponine scaffold_9 . biological_region 702349 702350 0.999 + . logic_name=eponine scaffold_9 . biological_region 702369 702373 0.999 - . logic_name=eponine scaffold_9 . biological_region 702683 702684 0.999 - . logic_name=eponine scaffold_9 . repeat_region 703438 726160 . ? . description=dust scaffold_9 . exon 699069 699081 . - . ID=Phyra74784.1;Parent=Phyra74784;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 700376 702274 . + . ID=Phyra74785;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_9000188;logic_name=jgi_phyra1 scaffold_9 ensembl transcript 700376 702274 . + . ID=Phyra74785;Parent=Phyra74785;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_9 . CDS 700376 702274 . + 0 ID=Phyra74785;Parent=Phyra74785;rank=1 scaffold_9 . exon 700376 702274 . + . ID=Phyra74785.1;Parent=Phyra74785;constitutive=1;rank=1 scaffold_9 . repeat_region 703438 726160 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_8 1 732260 scaffold_8 . repeat_region 2346 2354 . ? . description=dust scaffold_8 . repeat_region 2559 2568 . ? . description=dust scaffold_8 . repeat_region 2941 2956 . ? . description=dust scaffold_8 . biological_region 3058 3063 0.999 - . logic_name=eponine scaffold_8 . biological_region 3116 3118 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 6026 7594 . + . ID=Phyra74400;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000001;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 6026 7594 . + . ID=Phyra74400;Parent=Phyra74400;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 6026 6508 . + 0 ID=Phyra74400;Parent=Phyra74400;rank=1 scaffold_8 . exon 6026 6508 . + . ID=Phyra74400.1;Parent=Phyra74400;constitutive=1;rank=1 scaffold_8 . CDS 6579 6678 . + 0 ID=Phyra74400;Parent=Phyra74400;rank=2 scaffold_8 . exon 6579 6678 . + . ID=Phyra74400.2;Parent=Phyra74400;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 6746 6881 . + 0 ID=Phyra74400;Parent=Phyra74400;rank=3 scaffold_8 . exon 6746 6881 . + . ID=Phyra74400.3;Parent=Phyra74400;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_8 . CDS 6952 7594 . + 0 ID=Phyra74400;Parent=Phyra74400;rank=4 scaffold_8 . exon 6952 7594 . + . ID=Phyra74400.4;Parent=Phyra74400;constitutive=1;ensembl_phase=2;rank=4 scaffold_8 ensembl protein_coding_gene 7732 9431 . - . ID=Phyra74401;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000002;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 7732 9431 . - . ID=Phyra74401;Parent=Phyra74401;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 7732 8030 . - 0 ID=Phyra74401;Parent=Phyra74401;rank=8 scaffold_8 . exon 7732 8030 . - . ID=Phyra74401.8;Parent=Phyra74401;constitutive=1;ensembl_phase=1;rank=8 scaffold_8 . CDS 8122 8258 . - 0 ID=Phyra74401;Parent=Phyra74401;rank=7 scaffold_8 . exon 8122 8258 . - . ID=Phyra74401.7;Parent=Phyra74401;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_8 . CDS 8355 8416 . - 0 ID=Phyra74401;Parent=Phyra74401;rank=6 scaffold_8 . exon 8355 8416 . - . ID=Phyra74401.6;Parent=Phyra74401;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_8 . CDS 8493 8783 . - 0 ID=Phyra74401;Parent=Phyra74401;rank=5 scaffold_8 . exon 8493 8783 . - . ID=Phyra74401.5;Parent=Phyra74401;constitutive=1;rank=5 scaffold_8 . CDS 8861 8888 . - 0 ID=Phyra74401;Parent=Phyra74401;rank=4 scaffold_8 . exon 8861 8888 . - . ID=Phyra74401.4;Parent=Phyra74401;constitutive=1;ensembl_phase=2;rank=4 scaffold_8 . CDS 8939 9066 . - 0 ID=Phyra74401;Parent=Phyra74401;rank=3 scaffold_8 . exon 8939 9066 . - . ID=Phyra74401.3;Parent=Phyra74401;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_8 . CDS 9129 9250 . - 0 ID=Phyra74401;Parent=Phyra74401;rank=2 scaffold_8 . exon 9129 9250 . - . ID=Phyra74401.2;Parent=Phyra74401;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 9338 9431 . - 0 ID=Phyra74401;Parent=Phyra74401;rank=1 scaffold_8 . exon 9338 9431 . - . ID=Phyra74401.1;Parent=Phyra74401;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 10416 11558 . + . ID=Phyra74402;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000003;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 10416 11558 . + . ID=Phyra74402;Parent=Phyra74402;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 10416 11402 . + 0 ID=Phyra74402;Parent=Phyra74402;rank=1 scaffold_8 . exon 10416 11402 . + . ID=Phyra74402.1;Parent=Phyra74402;constitutive=1;rank=1 scaffold_8 . CDS 11478 11558 . + 0 ID=Phyra74402;Parent=Phyra74402;rank=2 scaffold_8 . exon 11478 11558 . + . ID=Phyra74402.2;Parent=Phyra74402;constitutive=1;rank=2 scaffold_8 ensembl protein_coding_gene 15225 17113 . + . ID=Phyra74403;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000004;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 15225 17113 . + . ID=Phyra74403;Parent=Phyra74403;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 15225 15377 . + 0 ID=Phyra74403;Parent=Phyra74403;rank=1 scaffold_8 . exon 15225 15377 . + . ID=Phyra74403.1;Parent=Phyra74403;constitutive=1;rank=1 scaffold_8 . CDS 15463 15533 . + 0 ID=Phyra74403;Parent=Phyra74403;rank=2 scaffold_8 . exon 15463 15533 . + . ID=Phyra74403.2;Parent=Phyra74403;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 15602 15652 . + 0 ID=Phyra74403;Parent=Phyra74403;rank=3 scaffold_8 . exon 15602 15652 . + . ID=Phyra74403.3;Parent=Phyra74403;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_8 . CDS 15717 15853 . + 0 ID=Phyra74403;Parent=Phyra74403;rank=4 scaffold_8 . exon 15717 15853 . + . ID=Phyra74403.4;Parent=Phyra74403;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_8 . CDS 16233 17113 . + 0 ID=Phyra74403;Parent=Phyra74403;rank=5 scaffold_8 . exon 16233 17113 . + . ID=Phyra74403.5;Parent=Phyra74403;constitutive=1;ensembl_phase=1;rank=5 scaffold_8 . repeat_region 20881 20888 . ? . description=dust scaffold_8 . biological_region 24974 24977 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 23528 25117 . + . ID=Phyra71195;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000001;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 23528 25117 . + . ID=Phyra71195;Parent=Phyra71195;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 23528 24163 . + 0 ID=Phyra71195;Parent=Phyra71195;rank=1 scaffold_8 . exon 23528 24163 . + . ID=Phyra71195.1;Parent=Phyra71195;constitutive=1;rank=1 scaffold_8 . CDS 24250 24605 . + 0 ID=Phyra71195;Parent=Phyra71195;rank=2 scaffold_8 . exon 24250 24605 . + . ID=Phyra71195.2;Parent=Phyra71195;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 24667 25117 . + 0 ID=Phyra71195;Parent=Phyra71195;rank=3 scaffold_8 . exon 24667 25117 . + . ID=Phyra71195.3;Parent=Phyra71195;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 ensembl protein_coding_gene 19930 23346 . - . ID=Phyra74404;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000005;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 19930 23346 . - . ID=Phyra74404;Parent=Phyra74404;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 19930 20562 . - 0 ID=Phyra74404;Parent=Phyra74404;rank=6 scaffold_8 . exon 19930 20562 . - . ID=Phyra74404.6;Parent=Phyra74404;constitutive=1;rank=6 scaffold_8 . CDS 20668 20806 . - 0 ID=Phyra74404;Parent=Phyra74404;rank=5 scaffold_8 . exon 20668 20806 . - . ID=Phyra74404.5;Parent=Phyra74404;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 20898 21073 . - 0 ID=Phyra74404;Parent=Phyra74404;rank=4 scaffold_8 . exon 20898 21073 . - . ID=Phyra74404.4;Parent=Phyra74404;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_8 . CDS 21290 21472 . - 0 ID=Phyra74404;Parent=Phyra74404;rank=3 scaffold_8 . exon 21290 21472 . - . ID=Phyra74404.3;Parent=Phyra74404;constitutive=1;rank=3 scaffold_8 . CDS 22087 22152 . - 0 ID=Phyra74404;Parent=Phyra74404;rank=2 scaffold_8 . exon 22087 22152 . - . ID=Phyra74404.2;Parent=Phyra74404;constitutive=1;rank=2 scaffold_8 . CDS 22222 23346 . - 0 ID=Phyra74404;Parent=Phyra74404;rank=1 scaffold_8 . exon 22222 23346 . - . ID=Phyra74404.1;Parent=Phyra74404;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 25375 27950 . + . ID=Phyra74406;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000007;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 25375 27950 . + . ID=Phyra74406;Parent=Phyra74406;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 25375 25545 . + 0 ID=Phyra74406;Parent=Phyra74406;rank=1 scaffold_8 . exon 25375 25545 . + . ID=Phyra74406.1;Parent=Phyra74406;constitutive=1;rank=1 scaffold_8 . CDS 25778 25825 . + 0 ID=Phyra74406;Parent=Phyra74406;rank=2 scaffold_8 . exon 25778 25825 . + . ID=Phyra74406.2;Parent=Phyra74406;constitutive=1;rank=2 scaffold_8 . CDS 25910 25977 . + 0 ID=Phyra74406;Parent=Phyra74406;rank=3 scaffold_8 . exon 25910 25977 . + . ID=Phyra74406.3;Parent=Phyra74406;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_8 . CDS 26058 26175 . + 0 ID=Phyra74406;Parent=Phyra74406;rank=4 scaffold_8 . exon 26058 26175 . + . ID=Phyra74406.4;Parent=Phyra74406;constitutive=1;ensembl_phase=2;rank=4 scaffold_8 . CDS 26238 26348 . + 0 ID=Phyra74406;Parent=Phyra74406;rank=5 scaffold_8 . exon 26238 26348 . + . ID=Phyra74406.5;Parent=Phyra74406;constitutive=1;rank=5 scaffold_8 . CDS 26414 26520 . + 0 ID=Phyra74406;Parent=Phyra74406;rank=6 scaffold_8 . exon 26414 26520 . + . ID=Phyra74406.6;Parent=Phyra74406;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_8 . CDS 26607 27695 . + 0 ID=Phyra74406;Parent=Phyra74406;rank=7 scaffold_8 . exon 26607 27695 . + . ID=Phyra74406.7;Parent=Phyra74406;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_8 . CDS 27824 27950 . + 0 ID=Phyra74406;Parent=Phyra74406;rank=8 scaffold_8 . exon 27824 27950 . + . ID=Phyra74406.8;Parent=Phyra74406;constitutive=1;ensembl_phase=2;rank=8 scaffold_8 ensembl protein_coding_gene 29360 30442 . + . ID=Phyra74407;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000008;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 29360 30442 . + . ID=Phyra74407;Parent=Phyra74407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 29360 30442 . + 0 ID=Phyra74407;Parent=Phyra74407;rank=1 scaffold_8 . exon 29360 30442 . + . ID=Phyra74407.1;Parent=Phyra74407;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 36839 38140 . - . ID=Phyra53357;biotype=protein_coding;external_name=gwEuk.8.156.1;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 36839 38140 . - . ID=Phyra53357;Parent=Phyra53357;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 36839 37894 . - 0 ID=Phyra53357;Parent=Phyra53357;rank=2 scaffold_8 . exon 36839 37894 . - . ID=Phyra53357.2;Parent=Phyra53357;constitutive=1;rank=2 scaffold_8 . CDS 37958 38140 . - 0 ID=Phyra53357;Parent=Phyra53357;rank=1 scaffold_8 . exon 37958 38140 . - . ID=Phyra53357.1;Parent=Phyra53357;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 38530 39916 . - . ID=Phyra53364;biotype=protein_coding;external_name=gwEuk.8.163.1;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 38530 39916 . - . ID=Phyra53364;Parent=Phyra53364;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 38530 38691 . - 0 ID=Phyra53364;Parent=Phyra53364;rank=4 scaffold_8 . exon 38530 38691 . - . ID=Phyra53364.4;Parent=Phyra53364;constitutive=1;rank=4 scaffold_8 . CDS 38753 39011 . - 0 ID=Phyra53364;Parent=Phyra53364;rank=3 scaffold_8 . exon 38753 39011 . - . ID=Phyra53364.3;Parent=Phyra53364;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 39085 39261 . - 0 ID=Phyra53364;Parent=Phyra53364;rank=2 scaffold_8 . exon 39085 39261 . - . ID=Phyra53364.2;Parent=Phyra53364;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_8 . CDS 39336 39916 . - 0 ID=Phyra53364;Parent=Phyra53364;rank=1 scaffold_8 . exon 39336 39916 . - . ID=Phyra53364.1;Parent=Phyra53364;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 30618 33170 . - . ID=Phyra74408;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000009;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 30618 33170 . - . ID=Phyra74408;Parent=Phyra74408;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 30618 33170 . - 0 ID=Phyra74408;Parent=Phyra74408;rank=1 scaffold_8 . exon 30618 33170 . - . ID=Phyra74408.1;Parent=Phyra74408;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 33274 36543 . - . ID=Phyra74409;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000010;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 33274 36543 . - . ID=Phyra74409;Parent=Phyra74409;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 33274 33916 . - 0 ID=Phyra74409;Parent=Phyra74409;rank=8 scaffold_8 . exon 33274 33916 . - . ID=Phyra74409.8;Parent=Phyra74409;constitutive=1;ensembl_phase=2;rank=8 scaffold_8 . CDS 33978 34110 . - 0 ID=Phyra74409;Parent=Phyra74409;rank=7 scaffold_8 . exon 33978 34110 . - . ID=Phyra74409.7;Parent=Phyra74409;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_8 . CDS 34184 34283 . - 0 ID=Phyra74409;Parent=Phyra74409;rank=6 scaffold_8 . exon 34184 34283 . - . ID=Phyra74409.6;Parent=Phyra74409;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_8 . CDS 34357 34906 . - 0 ID=Phyra74409;Parent=Phyra74409;rank=5 scaffold_8 . exon 34357 34906 . - . ID=Phyra74409.5;Parent=Phyra74409;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 35018 35656 . - 0 ID=Phyra74409;Parent=Phyra74409;rank=4 scaffold_8 . exon 35018 35656 . - . ID=Phyra74409.4;Parent=Phyra74409;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_8 . CDS 35724 35799 . - 0 ID=Phyra74409;Parent=Phyra74409;rank=3 scaffold_8 . exon 35724 35799 . - . ID=Phyra74409.3;Parent=Phyra74409;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_8 . CDS 35932 36031 . - 0 ID=Phyra74409;Parent=Phyra74409;rank=2 scaffold_8 . exon 35932 36031 . - . ID=Phyra74409.2;Parent=Phyra74409;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 36100 36543 . - 0 ID=Phyra74409;Parent=Phyra74409;rank=1 scaffold_8 . exon 36100 36543 . - . ID=Phyra74409.1;Parent=Phyra74409;constitutive=1;rank=1 scaffold_8 . biological_region 40739 40745 0.999 + . logic_name=eponine scaffold_8 . repeat_region 41673 41698 . ? . description=trf scaffold_8 . biological_region 48813 48816 0.999 + . logic_name=eponine scaffold_8 . repeat_region 48968 49070 . ? . description=trf scaffold_8 ensembl protein_coding_gene 41238 42876 . + . ID=Phyra74412;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000013;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 41238 42876 . + . ID=Phyra74412;Parent=Phyra74412;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 41238 41318 . + 0 ID=Phyra74412;Parent=Phyra74412;rank=1 scaffold_8 . exon 41238 41318 . + . ID=Phyra74412.1;Parent=Phyra74412;constitutive=1;rank=1 scaffold_8 . CDS 41392 41994 . + 0 ID=Phyra74412;Parent=Phyra74412;rank=2 scaffold_8 . exon 41392 41994 . + . ID=Phyra74412.2;Parent=Phyra74412;constitutive=1;rank=2 scaffold_8 . CDS 42069 42614 . + 0 ID=Phyra74412;Parent=Phyra74412;rank=3 scaffold_8 . exon 42069 42614 . + . ID=Phyra74412.3;Parent=Phyra74412;constitutive=1;rank=3 scaffold_8 . CDS 42679 42876 . + 0 ID=Phyra74412;Parent=Phyra74412;rank=4 scaffold_8 . exon 42679 42876 . + . ID=Phyra74412.4;Parent=Phyra74412;constitutive=1;rank=4 scaffold_8 ensembl protein_coding_gene 43254 44651 . - . ID=Phyra74413;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000014;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 43254 44651 . - . ID=Phyra74413;Parent=Phyra74413;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 43254 44651 . - 0 ID=Phyra74413;Parent=Phyra74413;rank=1 scaffold_8 . exon 43254 44651 . - . ID=Phyra74413.1;Parent=Phyra74413;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 47241 48946 . - . ID=Phyra74414;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000015;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 47241 48946 . - . ID=Phyra74414;Parent=Phyra74414;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 47241 47265 . - 0 ID=Phyra74414;Parent=Phyra74414;rank=4 scaffold_8 . exon 47241 47265 . - . ID=Phyra74414.4;Parent=Phyra74414;constitutive=1;ensembl_phase=2;rank=4 scaffold_8 . CDS 47395 47753 . - 0 ID=Phyra74414;Parent=Phyra74414;rank=3 scaffold_8 . exon 47395 47753 . - . ID=Phyra74414.3;Parent=Phyra74414;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_8 . CDS 47835 47945 . - 0 ID=Phyra74414;Parent=Phyra74414;rank=2 scaffold_8 . exon 47835 47945 . - . ID=Phyra74414.2;Parent=Phyra74414;constitutive=1;rank=2 scaffold_8 . CDS 48026 48946 . - 0 ID=Phyra74414;Parent=Phyra74414;rank=1 scaffold_8 . exon 48026 48946 . - . ID=Phyra74414.1;Parent=Phyra74414;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 49090 51497 . + . ID=Phyra74415;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000016;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 49090 51497 . + . ID=Phyra74415;Parent=Phyra74415;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 49090 49761 . + 0 ID=Phyra74415;Parent=Phyra74415;rank=1 scaffold_8 . exon 49090 49761 . + . ID=Phyra74415.1;Parent=Phyra74415;constitutive=1;rank=1 scaffold_8 . CDS 49833 50049 . + 0 ID=Phyra74415;Parent=Phyra74415;rank=2 scaffold_8 . CDS 50130 50184 . + 0 ID=Phyra74415;Parent=Phyra74415;rank=3 scaffold_8 . CDS 50204 50306 . + 0 ID=Phyra74415;Parent=Phyra74415;rank=4 scaffold_8 . CDS 50382 50493 . + 0 ID=Phyra74415;Parent=Phyra74415;rank=5 scaffold_8 . CDS 50569 51145 . + 0 ID=Phyra74415;Parent=Phyra74415;rank=6 scaffold_8 . CDS 51219 51276 . + 0 ID=Phyra74415;Parent=Phyra74415;rank=7 scaffold_8 . CDS 51462 51497 . + 0 ID=Phyra74415;Parent=Phyra74415;rank=8 scaffold_8 ensembl protein_coding_gene 52017 53302 . + . ID=Phyra71197;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000003;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 52017 53302 . + . ID=Phyra71197;Parent=Phyra71197;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 52017 52042 . + 0 ID=Phyra71197;Parent=Phyra71197;rank=1 scaffold_8 . exon 52017 52042 . + . ID=Phyra71197.1;Parent=Phyra71197;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 52113 52167 . + 0 ID=Phyra71197;Parent=Phyra71197;rank=2 scaffold_8 . exon 52113 52167 . + . ID=Phyra71197.2;Parent=Phyra71197;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 52251 52362 . + 0 ID=Phyra71197;Parent=Phyra71197;rank=3 scaffold_8 . exon 52251 52362 . + . ID=Phyra71197.3;Parent=Phyra71197;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . CDS 52445 53021 . + 0 ID=Phyra71197;Parent=Phyra71197;rank=4 scaffold_8 . exon 52445 53021 . + . ID=Phyra71197.4;Parent=Phyra71197;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_8 . CDS 53087 53205 . + 0 ID=Phyra71197;Parent=Phyra71197;rank=5 scaffold_8 . exon 53087 53205 . + . ID=Phyra71197.5;Parent=Phyra71197;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 53274 53302 . + 0 ID=Phyra71197;Parent=Phyra71197;rank=6 scaffold_8 . exon 53274 53302 . + . ID=Phyra71197.6;Parent=Phyra71197;constitutive=1;ensembl_phase=1;rank=6 scaffold_8 ensembl protein_coding_gene 55051 55743 . + . ID=Phyra71198;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000004;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 55051 55743 . + . ID=Phyra71198;Parent=Phyra71198;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 55051 55743 . + 0 ID=Phyra71198;Parent=Phyra71198;rank=1 scaffold_8 . exon 55051 55743 . + . ID=Phyra71198.1;Parent=Phyra71198;constitutive=1;rank=1 scaffold_8 . exon 49833 50049 . + . ID=Phyra74415.2;Parent=Phyra74415;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . exon 50130 50184 . + . ID=Phyra74415.3;Parent=Phyra74415;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_8 . exon 50204 50306 . + . ID=Phyra74415.4;Parent=Phyra74415;constitutive=1;ensembl_phase=2;rank=4 scaffold_8 . exon 50382 50493 . + . ID=Phyra74415.5;Parent=Phyra74415;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_8 . exon 50569 51145 . + . ID=Phyra74415.6;Parent=Phyra74415;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_8 . exon 51219 51276 . + . ID=Phyra74415.7;Parent=Phyra74415;constitutive=1;ensembl_phase=2;rank=7 scaffold_8 . exon 51462 51497 . + . ID=Phyra74415.8;Parent=Phyra74415;constitutive=1;rank=8 scaffold_8 ensembl protein_coding_gene 53459 54321 . + . ID=Phyra74417;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000018;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 53459 54321 . + . ID=Phyra74417;Parent=Phyra74417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 53459 53867 . + 0 ID=Phyra74417;Parent=Phyra74417;rank=1 scaffold_8 . exon 53459 53867 . + . ID=Phyra74417.1;Parent=Phyra74417;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 53956 53985 . + 0 ID=Phyra74417;Parent=Phyra74417;rank=2 scaffold_8 . exon 53956 53985 . + . ID=Phyra74417.2;Parent=Phyra74417;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 54053 54321 . + 0 ID=Phyra74417;Parent=Phyra74417;rank=3 scaffold_8 . exon 54053 54321 . + . ID=Phyra74417.3;Parent=Phyra74417;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 ensembl protein_coding_gene 56387 58051 . + . ID=Phyra74419;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000020;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 56387 58051 . + . ID=Phyra74419;Parent=Phyra74419;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 56387 58051 . + 0 ID=Phyra74419;Parent=Phyra74419;rank=1 scaffold_8 . exon 56387 58051 . + . ID=Phyra74419.1;Parent=Phyra74419;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 58364 60901 . + . ID=Phyra74420;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000021;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 58364 60901 . + . ID=Phyra74420;Parent=Phyra74420;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 58364 60901 . + 0 ID=Phyra74420;Parent=Phyra74420;rank=1 scaffold_8 . exon 58364 60901 . + . ID=Phyra74420.1;Parent=Phyra74420;constitutive=1;rank=1 scaffold_8 . biological_region 59407 59409 0.999 - . logic_name=eponine scaffold_8 . repeat_region 62837 62844 . ? . description=dust scaffold_8 . repeat_region 63501 63573 . ? . description=trf scaffold_8 . repeat_region 66547 66571 . ? . description=trf scaffold_8 . biological_region 68810 68814 0.999 - . logic_name=eponine scaffold_8 . biological_region 68971 68974 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 61194 62489 . - . ID=Phyra74421;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000022;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 61194 62489 . - . ID=Phyra74421;Parent=Phyra74421;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 61194 62489 . - 0 ID=Phyra74421;Parent=Phyra74421;rank=1 scaffold_8 . exon 61194 62489 . - . ID=Phyra74421.1;Parent=Phyra74421;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 65946 67531 . + . ID=Phyra74422;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000023;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 65946 67531 . + . ID=Phyra74422;Parent=Phyra74422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 65946 66244 . + 0 ID=Phyra74422;Parent=Phyra74422;rank=1 scaffold_8 . exon 65946 66244 . + . ID=Phyra74422.1;Parent=Phyra74422;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 66316 66541 . + 0 ID=Phyra74422;Parent=Phyra74422;rank=2 scaffold_8 . exon 66316 66541 . + . ID=Phyra74422.2;Parent=Phyra74422;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 66611 66842 . + 0 ID=Phyra74422;Parent=Phyra74422;rank=3 scaffold_8 . exon 66611 66842 . + . ID=Phyra74422.3;Parent=Phyra74422;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . CDS 66949 67130 . + 0 ID=Phyra74422;Parent=Phyra74422;rank=4 scaffold_8 . exon 66949 67130 . + . ID=Phyra74422.4;Parent=Phyra74422;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 67195 67311 . + 0 ID=Phyra74422;Parent=Phyra74422;rank=5 scaffold_8 . exon 67195 67311 . + . ID=Phyra74422.5;Parent=Phyra74422;constitutive=1;rank=5 scaffold_8 . CDS 67400 67531 . + 0 ID=Phyra74422;Parent=Phyra74422;rank=6 scaffold_8 . exon 67400 67531 . + . ID=Phyra74422.6;Parent=Phyra74422;constitutive=1;rank=6 scaffold_8 ensembl protein_coding_gene 67753 68997 . - . ID=Phyra74423;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000024;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 67753 68997 . - . ID=Phyra74423;Parent=Phyra74423;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 67753 67761 . - 0 ID=Phyra74423;Parent=Phyra74423;rank=2 scaffold_8 . exon 67753 67761 . - . ID=Phyra74423.2;Parent=Phyra74423;constitutive=1;rank=2 scaffold_8 . CDS 67870 68997 . - 0 ID=Phyra74423;Parent=Phyra74423;rank=1 scaffold_8 . exon 67870 68997 . - . ID=Phyra74423.1;Parent=Phyra74423;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 69249 70311 . - . ID=Phyra74424;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000025;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 69249 70311 . - . ID=Phyra74424;Parent=Phyra74424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 69249 69422 . - 0 ID=Phyra74424;Parent=Phyra74424;rank=4 scaffold_8 . exon 69249 69422 . - . ID=Phyra74424.4;Parent=Phyra74424;constitutive=1;rank=4 scaffold_8 . CDS 69499 69667 . - 0 ID=Phyra74424;Parent=Phyra74424;rank=3 scaffold_8 . CDS 69743 69964 . - 0 ID=Phyra74424;Parent=Phyra74424;rank=2 scaffold_8 . CDS 70033 70310 . - 0 ID=Phyra74424;Parent=Phyra74424;rank=1 scaffold_8 ensembl protein_coding_gene 70545 72073 . + . ID=Phyra71199;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000005;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 70545 72073 . + . ID=Phyra71199;Parent=Phyra71199;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 70545 70781 . + 0 ID=Phyra71199;Parent=Phyra71199;rank=1 scaffold_8 . exon 70545 70781 . + . ID=Phyra71199.1;Parent=Phyra71199;constitutive=1;rank=1 scaffold_8 . CDS 70823 70911 . + 0 ID=Phyra71199;Parent=Phyra71199;rank=2 scaffold_8 . exon 70823 70911 . + . ID=Phyra71199.2;Parent=Phyra71199;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 70995 71251 . + 0 ID=Phyra71199;Parent=Phyra71199;rank=3 scaffold_8 . exon 70995 71251 . + . ID=Phyra71199.3;Parent=Phyra71199;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 71321 71382 . + 0 ID=Phyra71199;Parent=Phyra71199;rank=4 scaffold_8 . exon 71321 71382 . + . ID=Phyra71199.4;Parent=Phyra71199;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 71455 71586 . + 0 ID=Phyra71199;Parent=Phyra71199;rank=5 scaffold_8 . exon 71455 71586 . + . ID=Phyra71199.5;Parent=Phyra71199;constitutive=1;rank=5 scaffold_8 . CDS 71670 71789 . + 0 ID=Phyra71199;Parent=Phyra71199;rank=6 scaffold_8 . exon 71670 71789 . + . ID=Phyra71199.6;Parent=Phyra71199;constitutive=1;rank=6 scaffold_8 . CDS 71861 71938 . + 0 ID=Phyra71199;Parent=Phyra71199;rank=7 scaffold_8 . exon 71861 71938 . + . ID=Phyra71199.7;Parent=Phyra71199;constitutive=1;rank=7 scaffold_8 . CDS 72026 72073 . + 0 ID=Phyra71199;Parent=Phyra71199;rank=8 scaffold_8 . exon 72026 72073 . + . ID=Phyra71199.8;Parent=Phyra71199;constitutive=1;rank=8 scaffold_8 ensembl protein_coding_gene 75065 76643 . - . ID=Phyra71200;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000006;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 75065 76643 . - . ID=Phyra71200;Parent=Phyra71200;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 75065 75982 . - 0 ID=Phyra71200;Parent=Phyra71200;rank=3 scaffold_8 . exon 75065 75982 . - . ID=Phyra71200.3;Parent=Phyra71200;constitutive=1;rank=3 scaffold_8 . CDS 76002 76523 . - 0 ID=Phyra71200;Parent=Phyra71200;rank=2 scaffold_8 . exon 76002 76523 . - . ID=Phyra71200.2;Parent=Phyra71200;constitutive=1;rank=2 scaffold_8 . CDS 76611 76643 . - 0 ID=Phyra71200;Parent=Phyra71200;rank=1 scaffold_8 . exon 76611 76643 . - . ID=Phyra71200.1;Parent=Phyra71200;constitutive=1;rank=1 scaffold_8 . exon 69499 69667 . - . ID=Phyra74424.3;Parent=Phyra74424;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . exon 69743 69964 . - . ID=Phyra74424.2;Parent=Phyra74424;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_8 . exon 70033 70311 . - . ID=Phyra74424.1;Parent=Phyra74424;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_8 ensembl protein_coding_gene 72331 74120 . - . ID=Phyra74426;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000027;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 72331 74120 . - . ID=Phyra74426;Parent=Phyra74426;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 72331 72434 . - 0 ID=Phyra74426;Parent=Phyra74426;rank=10 scaffold_8 . exon 72331 72434 . - . ID=Phyra74426.10;Parent=Phyra74426;constitutive=1;ensembl_phase=1;rank=10 scaffold_8 . CDS 72509 72630 . - 0 ID=Phyra74426;Parent=Phyra74426;rank=9 scaffold_8 . exon 72509 72630 . - . ID=Phyra74426.9;Parent=Phyra74426;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_8 . CDS 72703 72948 . - 0 ID=Phyra74426;Parent=Phyra74426;rank=8 scaffold_8 . exon 72703 72948 . - . ID=Phyra74426.8;Parent=Phyra74426;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_8 . CDS 73029 73132 . - 0 ID=Phyra74426;Parent=Phyra74426;rank=7 scaffold_8 . exon 73029 73132 . - . ID=Phyra74426.7;Parent=Phyra74426;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_8 . CDS 73198 73382 . - 0 ID=Phyra74426;Parent=Phyra74426;rank=6 scaffold_8 . exon 73198 73382 . - . ID=Phyra74426.6;Parent=Phyra74426;constitutive=1;ensembl_phase=1;rank=6 scaffold_8 . CDS 73478 73521 . - 0 ID=Phyra74426;Parent=Phyra74426;rank=5 scaffold_8 . exon 73478 73521 . - . ID=Phyra74426.5;Parent=Phyra74426;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 73581 73669 . - 0 ID=Phyra74426;Parent=Phyra74426;rank=4 scaffold_8 . exon 73581 73669 . - . ID=Phyra74426.4;Parent=Phyra74426;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_8 . CDS 73712 73833 . - 0 ID=Phyra74426;Parent=Phyra74426;rank=3 scaffold_8 . exon 73712 73833 . - . ID=Phyra74426.3;Parent=Phyra74426;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 73890 73964 . - 0 ID=Phyra74426;Parent=Phyra74426;rank=2 scaffold_8 . exon 73890 73964 . - . ID=Phyra74426.2;Parent=Phyra74426;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 74051 74120 . - 0 ID=Phyra74426;Parent=Phyra74426;rank=1 scaffold_8 . exon 74051 74120 . - . ID=Phyra74426.1;Parent=Phyra74426;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . biological_region 83377 83380 0.999 - . logic_name=eponine scaffold_8 . biological_region 87757 87762 0.999 - . logic_name=eponine scaffold_8 . biological_region 88357 88362 0.999 - . logic_name=eponine scaffold_8 . biological_region 88527 88530 0.999 - . logic_name=eponine scaffold_8 . biological_region 88570 88573 0.999 - . logic_name=eponine scaffold_8 . biological_region 88581 88582 0.999 + . logic_name=eponine scaffold_8 ensembl pseudogene 83132 84630 . + . ID=Phyra53422;biotype=pseudogene;external_name=gwEuk.8.221.1;logic_name=jgi_phyra1 scaffold_8 ensembl pseudogene 83132 84630 . + . ID=Phyra53422;Parent=Phyra53422;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_8 . exon 83132 84630 . + . ID=Phyra53422.1;Parent=Phyra53422;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 80397 81974 . + . ID=Phyra71201;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000007;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 80397 81974 . + . ID=Phyra71201;Parent=Phyra71201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 80397 80429 . + 0 ID=Phyra71201;Parent=Phyra71201;rank=1 scaffold_8 . exon 80397 80429 . + . ID=Phyra71201.1;Parent=Phyra71201;constitutive=1;rank=1 scaffold_8 . CDS 80517 81974 . + 0 ID=Phyra71201;Parent=Phyra71201;rank=2 scaffold_8 . exon 80517 81974 . + . ID=Phyra71201.2;Parent=Phyra71201;constitutive=1;rank=2 scaffold_8 ensembl protein_coding_gene 84951 88827 . - . ID=Phyra74431;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000032;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 84951 88827 . - . ID=Phyra74431;Parent=Phyra74431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 84951 88764 . - 0 ID=Phyra74431;Parent=Phyra74431;rank=2 scaffold_8 . exon 84951 88764 . - . ID=Phyra74431.2;Parent=Phyra74431;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 88820 88827 . - 0 ID=Phyra74431;Parent=Phyra74431;rank=1 scaffold_8 . exon 88820 88827 . - . ID=Phyra74431.1;Parent=Phyra74431;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 88966 90528 . + . ID=Phyra74432;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000033;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 88966 90528 . + . ID=Phyra74432;Parent=Phyra74432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 88966 90528 . + 0 ID=Phyra74432;Parent=Phyra74432;rank=1 scaffold_8 . exon 88966 90528 . + . ID=Phyra74432.1;Parent=Phyra74432;constitutive=1;rank=1 scaffold_8 . repeat_region 94421 94446 . ? . description=trf scaffold_8 . repeat_region 94421 94446 . ? . description=dust scaffold_8 ensembl protein_coding_gene 90707 92775 . - . ID=Phyra74433;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000034;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 90707 92775 . - . ID=Phyra74433;Parent=Phyra74433;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 90707 90784 . - 0 ID=Phyra74433;Parent=Phyra74433;rank=3 scaffold_8 . exon 90707 90784 . - . ID=Phyra74433.3;Parent=Phyra74433;constitutive=1;rank=3 scaffold_8 . CDS 90928 91065 . - 0 ID=Phyra74433;Parent=Phyra74433;rank=2 scaffold_8 . exon 90928 91065 . - . ID=Phyra74433.2;Parent=Phyra74433;constitutive=1;rank=2 scaffold_8 . CDS 91108 92775 . - 0 ID=Phyra74433;Parent=Phyra74433;rank=1 scaffold_8 . exon 91108 92775 . - . ID=Phyra74433.1;Parent=Phyra74433;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 92947 93993 . - . ID=Phyra74434;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000035;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 92947 93993 . - . ID=Phyra74434;Parent=Phyra74434;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 92947 93993 . - 0 ID=Phyra74434;Parent=Phyra74434;rank=1 scaffold_8 . exon 92947 93993 . - . ID=Phyra74434.1;Parent=Phyra74434;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 94212 95147 . + . ID=Phyra74435;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000036;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 94212 95147 . + . ID=Phyra74435;Parent=Phyra74435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 94212 94679 . + 0 ID=Phyra74435;Parent=Phyra74435;rank=1 scaffold_8 . exon 94212 94679 . + . ID=Phyra74435.1;Parent=Phyra74435;constitutive=1;rank=1 scaffold_8 . CDS 94750 94841 . + 0 ID=Phyra74435;Parent=Phyra74435;rank=2 scaffold_8 . exon 94750 94841 . + . ID=Phyra74435.2;Parent=Phyra74435;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 94907 95147 . + 0 ID=Phyra74435;Parent=Phyra74435;rank=3 scaffold_8 . exon 94907 95147 . + . ID=Phyra74435.3;Parent=Phyra74435;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 ensembl protein_coding_gene 95277 98837 . - . ID=Phyra74436;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000037;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 95277 98837 . - . ID=Phyra74436;Parent=Phyra74436;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 95277 95460 . - 0 ID=Phyra74436;Parent=Phyra74436;rank=3 scaffold_8 . exon 95277 95460 . - . ID=Phyra74436.3;Parent=Phyra74436;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 95534 95850 . - 0 ID=Phyra74436;Parent=Phyra74436;rank=2 scaffold_8 . exon 95534 95850 . - . ID=Phyra74436.2;Parent=Phyra74436;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 95919 98837 . - 0 ID=Phyra74436;Parent=Phyra74436;rank=1 scaffold_8 . exon 95919 98837 . - . ID=Phyra74436.1;Parent=Phyra74436;constitutive=1;rank=1 scaffold_8 . repeat_region 99010 99089 . - . description=Gypsy-1-LTR_PI scaffold_8 ensembl pseudogene 104281 104525 . + . ID=Phyra53426;biotype=pseudogene;external_name=gwEuk.8.225.1;logic_name=jgi_phyra1 scaffold_8 ensembl pseudogene 104281 104525 . + . ID=Phyra53426;Parent=Phyra53426;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_8 . exon 104281 104525 . + . ID=Phyra53426.1;Parent=Phyra53426;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . repeat_region 109965 110091 . ? . description=dust scaffold_8 . repeat_region 111447 116504 . ? . description=dust scaffold_8 . repeat_region 116963 117006 . ? . description=trf scaffold_8 . biological_region 124318 124323 0.999 + . logic_name=eponine scaffold_8 . biological_region 124411 124414 0.999 - . logic_name=eponine scaffold_8 . biological_region 125284 125289 0.999 + . logic_name=eponine scaffold_8 . repeat_region 125361 125582 . - . description=GypsyPi-1c_I-int scaffold_8 . repeat_region 125957 127266 . - . description=GypsyPi-1c_I-int scaffold_8 . repeat_region 127386 127831 . - . description=GypsyPi-1c_I-int scaffold_8 . biological_region 128301 128302 0.999 - . logic_name=eponine scaffold_8 . biological_region 128352 128358 0.999 - . logic_name=eponine scaffold_8 . biological_region 128393 128394 0.999 + . logic_name=eponine scaffold_8 . biological_region 128411 128411 0.999 + . logic_name=eponine scaffold_8 . biological_region 128429 128432 0.999 + . logic_name=eponine scaffold_8 . biological_region 128455 128460 0.999 - . logic_name=eponine scaffold_8 . biological_region 128507 128511 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 125903 132192 . - . ID=Phyra74437;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000038;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 125903 132192 . - . ID=Phyra74437;Parent=Phyra74437;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 125903 125914 . - 0 ID=Phyra74437;Parent=Phyra74437;rank=13 scaffold_8 . exon 125903 125914 . - . ID=Phyra74437.13;Parent=Phyra74437;constitutive=1;rank=13 scaffold_8 . CDS 125997 126146 . - 0 ID=Phyra74437;Parent=Phyra74437;rank=12 scaffold_8 . exon 125997 126146 . - . ID=Phyra74437.12;Parent=Phyra74437;constitutive=1;rank=12 scaffold_8 . CDS 126472 127063 . - 0 ID=Phyra74437;Parent=Phyra74437;rank=11 scaffold_8 . exon 126472 127063 . - . ID=Phyra74437.11;Parent=Phyra74437;constitutive=1;ensembl_phase=2;rank=11 scaffold_8 . CDS 127383 127837 . - 0 ID=Phyra74437;Parent=Phyra74437;rank=10 scaffold_8 . exon 127383 127837 . - . ID=Phyra74437.10;Parent=Phyra74437;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_8 . CDS 127864 128444 . - 0 ID=Phyra74437;Parent=Phyra74437;rank=9 scaffold_8 . exon 127864 128444 . - . ID=Phyra74437.9;Parent=Phyra74437;constitutive=1;ensembl_phase=1;rank=9 scaffold_8 . CDS 128769 128955 . - 0 ID=Phyra74437;Parent=Phyra74437;rank=8 scaffold_8 . CDS 129157 129357 . - 0 ID=Phyra74437;Parent=Phyra74437;rank=7 scaffold_8 . CDS 129410 130135 . - 0 ID=Phyra74437;Parent=Phyra74437;rank=6 scaffold_8 . CDS 130798 130944 . - 0 ID=Phyra74437;Parent=Phyra74437;rank=5 scaffold_8 . CDS 131051 131055 . - 0 ID=Phyra74437;Parent=Phyra74437;rank=4 scaffold_8 . CDS 131092 131462 . - 0 ID=Phyra74437;Parent=Phyra74437;rank=3 scaffold_8 . CDS 131482 131935 . - 0 ID=Phyra74437;Parent=Phyra74437;rank=2 scaffold_8 . CDS 131997 132192 . - 0 ID=Phyra74437;Parent=Phyra74437;rank=1 scaffold_8 . repeat_region 132600 132611 . ? . description=dust scaffold_8 . repeat_region 135221 135228 . ? . description=dust scaffold_8 . exon 128769 128955 . - . ID=Phyra74437.8;Parent=Phyra74437;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_8 . exon 129157 129357 . - . ID=Phyra74437.7;Parent=Phyra74437;constitutive=1;rank=7 scaffold_8 . exon 129410 130135 . - . ID=Phyra74437.6;Parent=Phyra74437;constitutive=1;rank=6 scaffold_8 . exon 130798 130944 . - . ID=Phyra74437.5;Parent=Phyra74437;constitutive=1;rank=5 scaffold_8 . exon 131051 131055 . - . ID=Phyra74437.4;Parent=Phyra74437;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . exon 131092 131462 . - . ID=Phyra74437.3;Parent=Phyra74437;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_8 . exon 131482 131935 . - . ID=Phyra74437.2;Parent=Phyra74437;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_8 . exon 131997 132192 . - . ID=Phyra74437.1;Parent=Phyra74437;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 135638 139576 . - . ID=Phyra74438;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000039;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 135638 139576 . - . ID=Phyra74438;Parent=Phyra74438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 135638 135695 . - 0 ID=Phyra74438;Parent=Phyra74438;rank=5 scaffold_8 . exon 135638 135695 . - . ID=Phyra74438.5;Parent=Phyra74438;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 135718 137041 . - 0 ID=Phyra74438;Parent=Phyra74438;rank=4 scaffold_8 . exon 135718 137041 . - . ID=Phyra74438.4;Parent=Phyra74438;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_8 . CDS 137122 137129 . - 0 ID=Phyra74438;Parent=Phyra74438;rank=3 scaffold_8 . exon 137122 137129 . - . ID=Phyra74438.3;Parent=Phyra74438;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 137432 138727 . - 0 ID=Phyra74438;Parent=Phyra74438;rank=2 scaffold_8 . exon 137432 138727 . - . ID=Phyra74438.2;Parent=Phyra74438;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_8 . CDS 138906 139576 . - 0 ID=Phyra74438;Parent=Phyra74438;rank=1 scaffold_8 . biological_region 139955 139958 0.999 - . logic_name=eponine scaffold_8 . biological_region 139969 139974 0.999 + . logic_name=eponine scaffold_8 . exon 138906 139576 . - . ID=Phyra74438.1;Parent=Phyra74438;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 139851 140699 . - . ID=Phyra74439;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000040;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 139851 140699 . - . ID=Phyra74439;Parent=Phyra74439;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 139851 140699 . - 0 ID=Phyra74439;Parent=Phyra74439;rank=1 scaffold_8 . exon 139851 140699 . - . ID=Phyra74439.1;Parent=Phyra74439;constitutive=1;rank=1 scaffold_8 . repeat_region 155840 155887 . ? . description=trf scaffold_8 . repeat_region 155850 155885 . ? . description=trf scaffold_8 ensembl protein_coding_gene 156205 158922 . + . ID=Phyra74440;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000041;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 156205 158922 . + . ID=Phyra74440;Parent=Phyra74440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 156205 157767 . + 0 ID=Phyra74440;Parent=Phyra74440;rank=1 scaffold_8 . exon 156205 157767 . + . ID=Phyra74440.1;Parent=Phyra74440;constitutive=1;rank=1 scaffold_8 . CDS 157851 157933 . + 0 ID=Phyra74440;Parent=Phyra74440;rank=2 scaffold_8 . exon 157851 157933 . + . ID=Phyra74440.2;Parent=Phyra74440;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 158004 158922 . + 0 ID=Phyra74440;Parent=Phyra74440;rank=3 scaffold_8 . exon 158004 158922 . + . ID=Phyra74440.3;Parent=Phyra74440;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . biological_region 161371 161373 0.999 - . logic_name=eponine scaffold_8 . biological_region 161549 161553 0.999 - . logic_name=eponine scaffold_8 . biological_region 162012 162014 0.999 + . logic_name=eponine scaffold_8 . biological_region 162134 162140 0.999 - . logic_name=eponine scaffold_8 . biological_region 162221 162224 0.999 + . logic_name=eponine scaffold_8 . biological_region 162232 162234 0.999 - . logic_name=eponine scaffold_8 . biological_region 162254 162257 0.999 - . logic_name=eponine scaffold_8 . biological_region 162310 162315 0.999 + . logic_name=eponine scaffold_8 . biological_region 162364 162368 0.999 + . logic_name=eponine scaffold_8 . biological_region 162428 162434 0.999 + . logic_name=eponine scaffold_8 . biological_region 163190 163192 0.999 + . logic_name=eponine scaffold_8 . biological_region 163201 163204 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 159109 161370 . - . ID=Phyra74441;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000042;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 159109 161370 . - . ID=Phyra74441;Parent=Phyra74441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 159109 159528 . - 0 ID=Phyra74441;Parent=Phyra74441;rank=2 scaffold_8 . exon 159109 159528 . - . ID=Phyra74441.2;Parent=Phyra74441;constitutive=1;rank=2 scaffold_8 . CDS 159751 161370 . - 0 ID=Phyra74441;Parent=Phyra74441;rank=1 scaffold_8 . exon 159751 161370 . - . ID=Phyra74441.1;Parent=Phyra74441;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 162911 175282 . + . ID=Phyra74442;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000043;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 162911 175282 . + . ID=Phyra74442;Parent=Phyra74442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 162911 175282 . + 0 ID=Phyra74442;Parent=Phyra74442;rank=1 scaffold_8 . exon 162911 175282 . + . ID=Phyra74442.1;Parent=Phyra74442;constitutive=1;rank=1 scaffold_8 . repeat_region 169110 169157 . ? . description=trf scaffold_8 ensembl protein_coding_gene 177962 179125 . - . ID=Phyra53441;biotype=protein_coding;external_name=gwEuk.8.240.1;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 177962 179125 . - . ID=Phyra53441;Parent=Phyra53441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 177962 178028 . - 0 ID=Phyra53441;Parent=Phyra53441;rank=7 scaffold_8 . exon 177962 178028 . - . ID=Phyra53441.7;Parent=Phyra53441;constitutive=1;ensembl_phase=2;rank=7 scaffold_8 . CDS 178124 178247 . - 0 ID=Phyra53441;Parent=Phyra53441;rank=6 scaffold_8 . exon 178124 178247 . - . ID=Phyra53441.6;Parent=Phyra53441;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_8 . CDS 178322 178485 . - 0 ID=Phyra53441;Parent=Phyra53441;rank=5 scaffold_8 . CDS 178559 178617 . - 0 ID=Phyra53441;Parent=Phyra53441;rank=4 scaffold_8 . CDS 178692 178751 . - 0 ID=Phyra53441;Parent=Phyra53441;rank=3 scaffold_8 . CDS 178822 178855 . - 0 ID=Phyra53441;Parent=Phyra53441;rank=2 scaffold_8 . CDS 178929 179125 . - 0 ID=Phyra53441;Parent=Phyra53441;rank=1 scaffold_8 ensembl protein_coding_gene 175577 177424 . - . ID=Phyra74443;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000044;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 175577 177424 . - . ID=Phyra74443;Parent=Phyra74443;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 175577 177327 . - 0 ID=Phyra74443;Parent=Phyra74443;rank=2 scaffold_8 . exon 175577 177327 . - . ID=Phyra74443.2;Parent=Phyra74443;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 177394 177424 . - 0 ID=Phyra74443;Parent=Phyra74443;rank=1 scaffold_8 . exon 177394 177424 . - . ID=Phyra74443.1;Parent=Phyra74443;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . biological_region 180802 180802 0.999 - . logic_name=eponine scaffold_8 . biological_region 180857 180860 0.999 + . logic_name=eponine scaffold_8 . biological_region 185253 185254 0.999 + . logic_name=eponine scaffold_8 . biological_region 186171 186177 0.999 + . logic_name=eponine scaffold_8 . biological_region 186209 186210 0.999 + . logic_name=eponine scaffold_8 . biological_region 186242 186246 0.999 - . logic_name=eponine scaffold_8 . biological_region 186249 186251 0.999 + . logic_name=eponine scaffold_8 . biological_region 186262 186266 0.999 - . logic_name=eponine scaffold_8 . biological_region 186286 186288 0.999 - . logic_name=eponine scaffold_8 . exon 178322 178485 . - . ID=Phyra53441.5;Parent=Phyra53441;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_8 . exon 178559 178617 . - . ID=Phyra53441.4;Parent=Phyra53441;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_8 . exon 178692 178751 . - . ID=Phyra53441.3;Parent=Phyra53441;constitutive=1;rank=3 scaffold_8 . exon 178822 178855 . - . ID=Phyra53441.2;Parent=Phyra53441;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . exon 178929 179125 . - . ID=Phyra53441.1;Parent=Phyra53441;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 179413 180291 . + . ID=Phyra71203;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000009;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 179413 180291 . + . ID=Phyra71203;Parent=Phyra71203;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 179413 179826 . + 0 ID=Phyra71203;Parent=Phyra71203;rank=1 scaffold_8 . exon 179413 179826 . + . ID=Phyra71203.1;Parent=Phyra71203;constitutive=1;rank=1 scaffold_8 . CDS 179897 180026 . + 0 ID=Phyra71203;Parent=Phyra71203;rank=2 scaffold_8 . exon 179897 180026 . + . ID=Phyra71203.2;Parent=Phyra71203;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 180093 180244 . + 0 ID=Phyra71203;Parent=Phyra71203;rank=3 scaffold_8 . exon 180093 180244 . + . ID=Phyra71203.3;Parent=Phyra71203;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 180277 180291 . + 0 ID=Phyra71203;Parent=Phyra71203;rank=4 scaffold_8 . exon 180277 180291 . + . ID=Phyra71203.4;Parent=Phyra71203;constitutive=1;rank=4 scaffold_8 ensembl protein_coding_gene 180797 181562 . + . ID=Phyra74446;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000047;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 180797 181562 . + . ID=Phyra74446;Parent=Phyra74446;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 180797 181342 . + 0 ID=Phyra74446;Parent=Phyra74446;rank=1 scaffold_8 . exon 180797 181342 . + . ID=Phyra74446.1;Parent=Phyra74446;constitutive=1;rank=1 scaffold_8 . CDS 181407 181562 . + 0 ID=Phyra74446;Parent=Phyra74446;rank=2 scaffold_8 . exon 181407 181562 . + . ID=Phyra74446.2;Parent=Phyra74446;constitutive=1;rank=2 scaffold_8 ensembl protein_coding_gene 181715 183732 . + . ID=Phyra74447;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000048;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 181715 183732 . + . ID=Phyra74447;Parent=Phyra74447;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 181715 181814 . + 0 ID=Phyra74447;Parent=Phyra74447;rank=1 scaffold_8 . exon 181715 181814 . + . ID=Phyra74447.1;Parent=Phyra74447;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 181927 182141 . + 0 ID=Phyra74447;Parent=Phyra74447;rank=2 scaffold_8 . exon 181927 182141 . + . ID=Phyra74447.2;Parent=Phyra74447;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 182222 182916 . + 0 ID=Phyra74447;Parent=Phyra74447;rank=3 scaffold_8 . exon 182222 182916 . + . ID=Phyra74447.3;Parent=Phyra74447;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_8 . CDS 183005 183230 . + 0 ID=Phyra74447;Parent=Phyra74447;rank=4 scaffold_8 . exon 183005 183230 . + . ID=Phyra74447.4;Parent=Phyra74447;constitutive=1;ensembl_phase=2;rank=4 scaffold_8 . CDS 183297 183542 . + 0 ID=Phyra74447;Parent=Phyra74447;rank=5 scaffold_8 . exon 183297 183542 . + . ID=Phyra74447.5;Parent=Phyra74447;constitutive=1;rank=5 scaffold_8 . CDS 183580 183732 . + 0 ID=Phyra74447;Parent=Phyra74447;rank=6 scaffold_8 . exon 183580 183732 . + . ID=Phyra74447.6;Parent=Phyra74447;constitutive=1;rank=6 scaffold_8 ensembl protein_coding_gene 183906 186332 . - . ID=Phyra74448;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000049;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 183906 186332 . - . ID=Phyra74448;Parent=Phyra74448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 183906 186332 . - 0 ID=Phyra74448;Parent=Phyra74448;rank=1 scaffold_8 . exon 183906 186332 . - . ID=Phyra74448.1;Parent=Phyra74448;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 188465 190231 . + . ID=Phyra74449;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000050;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 188465 190231 . + . ID=Phyra74449;Parent=Phyra74449;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 188465 190231 . + 0 ID=Phyra74449;Parent=Phyra74449;rank=1 scaffold_8 . exon 188465 190231 . + . ID=Phyra74449.1;Parent=Phyra74449;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 190960 192711 . + . ID=Phyra74450;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000051;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 190960 192711 . + . ID=Phyra74450;Parent=Phyra74450;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 190960 192711 . + 0 ID=Phyra74450;Parent=Phyra74450;rank=1 scaffold_8 . exon 190960 192711 . + . ID=Phyra74450.1;Parent=Phyra74450;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 196955 198577 . + . ID=Phyra74451;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000052;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 196955 198577 . + . ID=Phyra74451;Parent=Phyra74451;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 196955 197316 . + 0 ID=Phyra74451;Parent=Phyra74451;rank=1 scaffold_8 . exon 196955 197316 . + . ID=Phyra74451.1;Parent=Phyra74451;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 197579 198445 . + 0 ID=Phyra74451;Parent=Phyra74451;rank=2 scaffold_8 . exon 197579 198445 . + . ID=Phyra74451.2;Parent=Phyra74451;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_8 . CDS 198474 198486 . + 0 ID=Phyra74451;Parent=Phyra74451;rank=3 scaffold_8 . CDS 198524 198577 . + 0 ID=Phyra74451;Parent=Phyra74451;rank=4 scaffold_8 . repeat_region 201431 201608 . - . description=Polinton-1_PI scaffold_8 . repeat_region 202947 211206 . + . description=Polinton-1_PI scaffold_8 . repeat_region 203136 203175 . ? . description=trf scaffold_8 . repeat_region 207295 207302 . ? . description=dust scaffold_8 . exon 198474 198486 . + . ID=Phyra74451.3;Parent=Phyra74451;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . exon 198524 198577 . + . ID=Phyra74451.4;Parent=Phyra74451;constitutive=1;rank=4 scaffold_8 ensembl protein_coding_gene 200227 201284 . + . ID=Phyra74452;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000053;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 200227 201284 . + . ID=Phyra74452;Parent=Phyra74452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 200227 200256 . + 0 ID=Phyra74452;Parent=Phyra74452;rank=1 scaffold_8 . exon 200227 200256 . + . ID=Phyra74452.1;Parent=Phyra74452;constitutive=1;rank=1 scaffold_8 . CDS 200415 201284 . + 0 ID=Phyra74452;Parent=Phyra74452;rank=2 scaffold_8 . exon 200415 201284 . + . ID=Phyra74452.2;Parent=Phyra74452;constitutive=1;rank=2 scaffold_8 . repeat_region 212666 212745 . + . description=GypsyPi-1c_I-int scaffold_8 . biological_region 212695 212699 0.999 - . logic_name=eponine scaffold_8 . biological_region 213007 213009 0.999 - . logic_name=eponine scaffold_8 . biological_region 213042 213047 0.999 - . logic_name=eponine scaffold_8 . biological_region 213061 213067 0.999 + . logic_name=eponine scaffold_8 . biological_region 213300 213303 0.999 - . logic_name=eponine scaffold_8 . biological_region 213457 213462 0.999 + . logic_name=eponine scaffold_8 . repeat_region 215950 217918 . + . description=Polinton-1_PI scaffold_8 . repeat_region 217942 217971 . ? . description=trf scaffold_8 . repeat_region 218594 218643 . ? . description=dust scaffold_8 . repeat_region 218644 219100 . + . description=Polinton-1_PI scaffold_8 . repeat_region 221693 221700 . ? . description=dust scaffold_8 . repeat_region 222527 226714 . + . description=Polinton-1_PI scaffold_8 . repeat_region 223420 223428 . ? . description=dust scaffold_8 . repeat_region 226326 226333 . ? . description=dust scaffold_8 . repeat_region 226699 226706 . ? . description=dust scaffold_8 ensembl protein_coding_gene 219282 221476 . + . ID=Phyra74453;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000054;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 219282 221476 . + . ID=Phyra74453;Parent=Phyra74453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 219282 219535 . + 0 ID=Phyra74453;Parent=Phyra74453;rank=1 scaffold_8 . exon 219282 219535 . + . ID=Phyra74453.1;Parent=Phyra74453;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 219634 219728 . + 0 ID=Phyra74453;Parent=Phyra74453;rank=2 scaffold_8 . exon 219634 219728 . + . ID=Phyra74453.2;Parent=Phyra74453;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 219761 220053 . + 0 ID=Phyra74453;Parent=Phyra74453;rank=3 scaffold_8 . exon 219761 220053 . + . ID=Phyra74453.3;Parent=Phyra74453;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 220529 221476 . + 0 ID=Phyra74453;Parent=Phyra74453;rank=4 scaffold_8 . exon 220529 221476 . + . ID=Phyra74453.4;Parent=Phyra74453;constitutive=1;rank=4 scaffold_8 ensembl protein_coding_gene 227141 228136 . - . ID=Phyra74454;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000055;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 227141 228136 . - . ID=Phyra74454;Parent=Phyra74454;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 227141 227608 . - 0 ID=Phyra74454;Parent=Phyra74454;rank=3 scaffold_8 . exon 227141 227608 . - . ID=Phyra74454.3;Parent=Phyra74454;constitutive=1;rank=3 scaffold_8 . CDS 227671 227763 . - 0 ID=Phyra74454;Parent=Phyra74454;rank=2 scaffold_8 . CDS 227933 228136 . - 0 ID=Phyra74454;Parent=Phyra74454;rank=1 scaffold_8 . biological_region 228381 228382 0.999 + . logic_name=eponine scaffold_8 . biological_region 228432 228434 0.999 + . logic_name=eponine scaffold_8 . biological_region 228470 228470 0.999 - . logic_name=eponine scaffold_8 . biological_region 230938 230939 0.999 - . logic_name=eponine scaffold_8 . biological_region 230969 230969 0.999 - . logic_name=eponine scaffold_8 . biological_region 231135 231138 0.999 - . logic_name=eponine scaffold_8 . biological_region 231199 231202 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 228389 229672 . + . ID=Phyra71204;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000010;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 228389 229672 . + . ID=Phyra71204;Parent=Phyra71204;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 228389 228496 . + 0 ID=Phyra71204;Parent=Phyra71204;rank=1 scaffold_8 . exon 228389 228496 . + . ID=Phyra71204.1;Parent=Phyra71204;constitutive=1;rank=1 scaffold_8 . CDS 228560 229425 . + 0 ID=Phyra71204;Parent=Phyra71204;rank=2 scaffold_8 . exon 228560 229425 . + . ID=Phyra71204.2;Parent=Phyra71204;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 229507 229672 . + 0 ID=Phyra71204;Parent=Phyra71204;rank=3 scaffold_8 . exon 229507 229672 . + . ID=Phyra71204.3;Parent=Phyra71204;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . exon 227671 227763 . - . ID=Phyra74454.2;Parent=Phyra74454;constitutive=1;rank=2 scaffold_8 . exon 227933 228136 . - . ID=Phyra74454.1;Parent=Phyra74454;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 230113 231293 . - . ID=Phyra74456;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000057;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 230113 231293 . - . ID=Phyra74456;Parent=Phyra74456;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 230113 230296 . - 0 ID=Phyra74456;Parent=Phyra74456;rank=3 scaffold_8 . exon 230113 230296 . - . ID=Phyra74456.3;Parent=Phyra74456;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 230379 230713 . - 0 ID=Phyra74456;Parent=Phyra74456;rank=2 scaffold_8 . exon 230379 230713 . - . ID=Phyra74456.2;Parent=Phyra74456;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 230778 231293 . - 0 ID=Phyra74456;Parent=Phyra74456;rank=1 scaffold_8 . exon 230778 231293 . - . ID=Phyra74456.1;Parent=Phyra74456;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 231579 232206 . - . ID=Phyra74457;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000058;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 231579 232206 . - . ID=Phyra74457;Parent=Phyra74457;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 231579 231734 . - 0 ID=Phyra74457;Parent=Phyra74457;rank=4 scaffold_8 . exon 231579 231734 . - . ID=Phyra74457.4;Parent=Phyra74457;constitutive=1;rank=4 scaffold_8 . CDS 231829 231885 . - 0 ID=Phyra74457;Parent=Phyra74457;rank=3 scaffold_8 . exon 231829 231885 . - . ID=Phyra74457.3;Parent=Phyra74457;constitutive=1;rank=3 scaffold_8 . CDS 231963 232070 . - 0 ID=Phyra74457;Parent=Phyra74457;rank=2 scaffold_8 . exon 231963 232070 . - . ID=Phyra74457.2;Parent=Phyra74457;constitutive=1;rank=2 scaffold_8 . CDS 232126 232206 . - 0 ID=Phyra74457;Parent=Phyra74457;rank=1 scaffold_8 . exon 232126 232206 . - . ID=Phyra74457.1;Parent=Phyra74457;constitutive=1;rank=1 scaffold_8 . repeat_region 239698 239710 . ? . description=dust scaffold_8 . repeat_region 240106 240165 . ? . description=trf scaffold_8 . repeat_region 240108 240158 . ? . description=trf scaffold_8 . repeat_region 241585 241593 . ? . description=dust scaffold_8 . repeat_region 243000 243051 . ? . description=trf scaffold_8 . repeat_region 244704 244711 . ? . description=dust scaffold_8 . repeat_region 246953 246962 . ? . description=dust scaffold_8 ensembl protein_coding_gene 247050 248627 . - . ID=Phyra71205;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000011;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 247050 248627 . - . ID=Phyra71205;Parent=Phyra71205;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 247050 248500 . - 0 ID=Phyra71205;Parent=Phyra71205;rank=2 scaffold_8 . exon 247050 248500 . - . ID=Phyra71205.2;Parent=Phyra71205;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 248609 248627 . - 0 ID=Phyra71205;Parent=Phyra71205;rank=1 scaffold_8 ensembl protein_coding_gene 244854 245830 . - . ID=Phyra74458;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000059;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 244854 245830 . - . ID=Phyra74458;Parent=Phyra74458;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 244854 244876 . - 0 ID=Phyra74458;Parent=Phyra74458;rank=2 scaffold_8 . exon 244854 244876 . - . ID=Phyra74458.2;Parent=Phyra74458;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 245272 245830 . - 0 ID=Phyra74458;Parent=Phyra74458;rank=1 scaffold_8 . exon 245272 245830 . - . ID=Phyra74458.1;Parent=Phyra74458;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . biological_region 248191 248191 0.999 + . logic_name=eponine scaffold_8 . biological_region 250932 250934 0.999 + . logic_name=eponine scaffold_8 . biological_region 251903 251907 0.999 - . logic_name=eponine scaffold_8 . biological_region 252000 252002 0.999 + . logic_name=eponine scaffold_8 . biological_region 253839 253844 0.999 - . logic_name=eponine scaffold_8 . exon 248609 248627 . - . ID=Phyra71205.1;Parent=Phyra71205;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 249552 252104 . - . ID=Phyra71206;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000012;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 249552 252104 . - . ID=Phyra71206;Parent=Phyra71206;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 249552 252104 . - 0 ID=Phyra71206;Parent=Phyra71206;rank=1 scaffold_8 . exon 249552 252104 . - . ID=Phyra71206.1;Parent=Phyra71206;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 253371 253832 . - . ID=Phyra71207;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000013;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 253371 253832 . - . ID=Phyra71207;Parent=Phyra71207;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 253371 253832 . - 0 ID=Phyra71207;Parent=Phyra71207;rank=1 scaffold_8 . exon 253371 253832 . - . ID=Phyra71207.1;Parent=Phyra71207;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 254044 254832 . - . ID=Phyra74462;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000063;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 254044 254832 . - . ID=Phyra74462;Parent=Phyra74462;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 254044 254460 . - 0 ID=Phyra74462;Parent=Phyra74462;rank=3 scaffold_8 . exon 254044 254460 . - . ID=Phyra74462.3;Parent=Phyra74462;constitutive=1;rank=3 scaffold_8 . CDS 254548 254793 . - 0 ID=Phyra74462;Parent=Phyra74462;rank=2 scaffold_8 . exon 254548 254793 . - . ID=Phyra74462.2;Parent=Phyra74462;constitutive=1;rank=2 scaffold_8 . CDS 254821 254832 . - 0 ID=Phyra74462;Parent=Phyra74462;rank=1 scaffold_8 . exon 254821 254832 . - . ID=Phyra74462.1;Parent=Phyra74462;constitutive=1;rank=1 scaffold_8 . repeat_region 265024 265051 . ? . description=trf scaffold_8 ensembl protein_coding_gene 258043 258756 . - . ID=Phyra74463;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000064;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 258043 258756 . - . ID=Phyra74463;Parent=Phyra74463;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 258043 258756 . - 0 ID=Phyra74463;Parent=Phyra74463;rank=1 scaffold_8 . exon 258043 258756 . - . ID=Phyra74463.1;Parent=Phyra74463;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 260103 262033 . + . ID=Phyra74464;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000065;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 260103 262033 . + . ID=Phyra74464;Parent=Phyra74464;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 260103 261449 . + 0 ID=Phyra74464;Parent=Phyra74464;rank=1 scaffold_8 . exon 260103 261449 . + . ID=Phyra74464.1;Parent=Phyra74464;constitutive=1;rank=1 scaffold_8 . CDS 261536 262033 . + 0 ID=Phyra74464;Parent=Phyra74464;rank=2 scaffold_8 . exon 261536 262033 . + . ID=Phyra74464.2;Parent=Phyra74464;constitutive=1;rank=2 scaffold_8 ensembl protein_coding_gene 262128 263052 . + . ID=Phyra74465;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000066;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 262128 263052 . + . ID=Phyra74465;Parent=Phyra74465;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 262128 262853 . + 0 ID=Phyra74465;Parent=Phyra74465;rank=1 scaffold_8 . exon 262128 262853 . + . ID=Phyra74465.1;Parent=Phyra74465;constitutive=1;rank=1 scaffold_8 . CDS 263035 263052 . + 0 ID=Phyra74465;Parent=Phyra74465;rank=2 scaffold_8 . exon 263035 263052 . + . ID=Phyra74465.2;Parent=Phyra74465;constitutive=1;rank=2 scaffold_8 ensembl protein_coding_gene 264367 266803 . - . ID=Phyra74466;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000067;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 264367 266803 . - . ID=Phyra74466;Parent=Phyra74466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 264367 264380 . - 0 ID=Phyra74466;Parent=Phyra74466;rank=7 scaffold_8 . exon 264367 264380 . - . ID=Phyra74466.7;Parent=Phyra74466;constitutive=1;ensembl_phase=1;rank=7 scaffold_8 . CDS 264459 264891 . - 0 ID=Phyra74466;Parent=Phyra74466;rank=6 scaffold_8 . exon 264459 264891 . - . ID=Phyra74466.6;Parent=Phyra74466;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_8 . CDS 264954 265004 . - 0 ID=Phyra74466;Parent=Phyra74466;rank=5 scaffold_8 . exon 264954 265004 . - . ID=Phyra74466.5;Parent=Phyra74466;constitutive=1;rank=5 scaffold_8 . CDS 265167 265595 . - 0 ID=Phyra74466;Parent=Phyra74466;rank=4 scaffold_8 . exon 265167 265595 . - . ID=Phyra74466.4;Parent=Phyra74466;constitutive=1;rank=4 scaffold_8 . CDS 265758 265833 . - 0 ID=Phyra74466;Parent=Phyra74466;rank=3 scaffold_8 . exon 265758 265833 . - . ID=Phyra74466.3;Parent=Phyra74466;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 265908 266653 . - 0 ID=Phyra74466;Parent=Phyra74466;rank=2 scaffold_8 . exon 265908 266653 . - . ID=Phyra74466.2;Parent=Phyra74466;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 266729 266803 . - 0 ID=Phyra74466;Parent=Phyra74466;rank=1 scaffold_8 . exon 266729 266803 . - . ID=Phyra74466.1;Parent=Phyra74466;constitutive=1;rank=1 scaffold_8 . repeat_region 271040 271100 . ? . description=dust scaffold_8 . repeat_region 271106 271194 . ? . description=dust scaffold_8 . biological_region 271828 271834 0.999 + . logic_name=eponine scaffold_8 . biological_region 272171 272172 0.999 - . logic_name=eponine scaffold_8 . repeat_region 272228 272248 . ? . description=dust scaffold_8 . biological_region 272342 272346 0.999 + . logic_name=eponine scaffold_8 . biological_region 273206 273209 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 267352 268259 . + . ID=Phyra53225;biotype=protein_coding;external_name=gwEuk.8.24.1;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 267352 268259 . + . ID=Phyra53225;Parent=Phyra53225;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 267352 267434 . + 0 ID=Phyra53225;Parent=Phyra53225;rank=1 scaffold_8 . exon 267352 267434 . + . ID=Phyra53225.1;Parent=Phyra53225;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 267502 267573 . + 0 ID=Phyra53225;Parent=Phyra53225;rank=2 scaffold_8 . exon 267502 267573 . + . ID=Phyra53225.2;Parent=Phyra53225;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_8 . CDS 267644 267996 . + 0 ID=Phyra53225;Parent=Phyra53225;rank=3 scaffold_8 . exon 267644 267996 . + . ID=Phyra53225.3;Parent=Phyra53225;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 268072 268259 . + 0 ID=Phyra53225;Parent=Phyra53225;rank=4 scaffold_8 . exon 268072 268259 . + . ID=Phyra53225.4;Parent=Phyra53225;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 ensembl protein_coding_gene 268728 272655 . - . ID=Phyra74468;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000069;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 268728 272655 . - . ID=Phyra74468;Parent=Phyra74468;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 268728 268736 . - 0 ID=Phyra74468;Parent=Phyra74468;rank=4 scaffold_8 . exon 268728 268736 . - . ID=Phyra74468.4;Parent=Phyra74468;constitutive=1;rank=4 scaffold_8 . CDS 268941 271383 . - 0 ID=Phyra74468;Parent=Phyra74468;rank=3 scaffold_8 . exon 268941 271383 . - . ID=Phyra74468.3;Parent=Phyra74468;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 271407 272407 . - 0 ID=Phyra74468;Parent=Phyra74468;rank=2 scaffold_8 . exon 271407 272407 . - . ID=Phyra74468.2;Parent=Phyra74468;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 272557 272655 . - 0 ID=Phyra74468;Parent=Phyra74468;rank=1 scaffold_8 . exon 272557 272655 . - . ID=Phyra74468.1;Parent=Phyra74468;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 273180 275240 . + . ID=Phyra74469;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000070;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 273180 275240 . + . ID=Phyra74469;Parent=Phyra74469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 273180 274547 . + 0 ID=Phyra74469;Parent=Phyra74469;rank=1 scaffold_8 . exon 273180 274547 . + . ID=Phyra74469.1;Parent=Phyra74469;constitutive=1;rank=1 scaffold_8 . CDS 274584 274698 . + 0 ID=Phyra74469;Parent=Phyra74469;rank=2 scaffold_8 . exon 274584 274698 . + . ID=Phyra74469.2;Parent=Phyra74469;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 274804 275141 . + 0 ID=Phyra74469;Parent=Phyra74469;rank=3 scaffold_8 . exon 274804 275141 . + . ID=Phyra74469.3;Parent=Phyra74469;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 275238 275240 . + 0 ID=Phyra74469;Parent=Phyra74469;rank=4 scaffold_8 . exon 275238 275240 . + . ID=Phyra74469.4;Parent=Phyra74469;constitutive=1;rank=4 scaffold_8 ensembl protein_coding_gene 275346 276800 . - . ID=Phyra74470;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000071;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 275346 276800 . - . ID=Phyra74470;Parent=Phyra74470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 275346 275691 . - 0 ID=Phyra74470;Parent=Phyra74470;rank=6 scaffold_8 . exon 275346 275691 . - . ID=Phyra74470.6;Parent=Phyra74470;constitutive=1;ensembl_phase=2;rank=6 scaffold_8 . CDS 275768 276093 . - 0 ID=Phyra74470;Parent=Phyra74470;rank=5 scaffold_8 . exon 275768 276093 . - . ID=Phyra74470.5;Parent=Phyra74470;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_8 . CDS 276163 276286 . - 0 ID=Phyra74470;Parent=Phyra74470;rank=4 scaffold_8 . exon 276163 276286 . - . ID=Phyra74470.4;Parent=Phyra74470;constitutive=1;ensembl_phase=2;rank=4 scaffold_8 . CDS 276359 276443 . - 0 ID=Phyra74470;Parent=Phyra74470;rank=3 scaffold_8 . exon 276359 276443 . - . ID=Phyra74470.3;Parent=Phyra74470;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_8 . CDS 276512 276606 . - 0 ID=Phyra74470;Parent=Phyra74470;rank=2 scaffold_8 . exon 276512 276606 . - . ID=Phyra74470.2;Parent=Phyra74470;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 276679 276800 . - 0 ID=Phyra74470;Parent=Phyra74470;rank=1 scaffold_8 . exon 276679 276800 . - . ID=Phyra74470.1;Parent=Phyra74470;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 277057 278598 . - . ID=Phyra74471;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000072;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 277057 278598 . - . ID=Phyra74471;Parent=Phyra74471;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 277057 278598 . - 0 ID=Phyra74471;Parent=Phyra74471;rank=1 scaffold_8 . exon 277057 278598 . - . ID=Phyra74471.1;Parent=Phyra74471;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 279135 280016 . + . ID=Phyra74472;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000073;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 279135 280016 . + . ID=Phyra74472;Parent=Phyra74472;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 279135 280016 . + 0 ID=Phyra74472;Parent=Phyra74472;rank=1 scaffold_8 . exon 279135 280016 . + . ID=Phyra74472.1;Parent=Phyra74472;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 283130 286181 . - . ID=Phyra74473;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000074;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 283130 286181 . - . ID=Phyra74473;Parent=Phyra74473;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 283130 283174 . - 0 ID=Phyra74473;Parent=Phyra74473;rank=5 scaffold_8 . exon 283130 283174 . - . ID=Phyra74473.5;Parent=Phyra74473;constitutive=1;rank=5 scaffold_8 . CDS 283626 285017 . - 0 ID=Phyra74473;Parent=Phyra74473;rank=4 scaffold_8 . exon 283626 285017 . - . ID=Phyra74473.4;Parent=Phyra74473;constitutive=1;rank=4 scaffold_8 . CDS 285113 285151 . - 0 ID=Phyra74473;Parent=Phyra74473;rank=3 scaffold_8 . exon 285113 285151 . - . ID=Phyra74473.3;Parent=Phyra74473;constitutive=1;rank=3 scaffold_8 . CDS 285246 285340 . - 0 ID=Phyra74473;Parent=Phyra74473;rank=2 scaffold_8 . exon 285246 285340 . - . ID=Phyra74473.2;Parent=Phyra74473;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 285485 286181 . - 0 ID=Phyra74473;Parent=Phyra74473;rank=1 scaffold_8 . exon 285485 286181 . - . ID=Phyra74473.1;Parent=Phyra74473;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 286650 287327 . + . ID=Phyra74474;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000075;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 286650 287327 . + . ID=Phyra74474;Parent=Phyra74474;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 286650 287327 . + 0 ID=Phyra74474;Parent=Phyra74474;rank=1 scaffold_8 . exon 286650 287327 . + . ID=Phyra74474.1;Parent=Phyra74474;constitutive=1;rank=1 scaffold_8 . biological_region 287771 287771 0.999 + . logic_name=eponine scaffold_8 . repeat_region 288237 288268 . ? . description=trf scaffold_8 . repeat_region 288303 288341 . ? . description=trf scaffold_8 . biological_region 288959 288961 0.999 + . logic_name=eponine scaffold_8 . biological_region 288982 288990 0.999 + . logic_name=eponine scaffold_8 . biological_region 289119 289124 0.999 - . logic_name=eponine scaffold_8 . repeat_region 289375 289383 . ? . description=dust scaffold_8 . biological_region 289972 289975 0.999 - . logic_name=eponine scaffold_8 . biological_region 291473 291473 0.999 + . logic_name=eponine scaffold_8 . biological_region 291747 291748 0.999 - . logic_name=eponine scaffold_8 . biological_region 291787 291788 0.999 + . logic_name=eponine scaffold_8 . biological_region 291838 291844 0.999 + . logic_name=eponine scaffold_8 . biological_region 291942 291946 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 292204 299381 . - . ID=Phyra71209;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000015;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 292204 299381 . - . ID=Phyra71209;Parent=Phyra71209;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 292204 294428 . - 0 ID=Phyra71209;Parent=Phyra71209;rank=3 scaffold_8 . exon 292204 294428 . - . ID=Phyra71209.3;Parent=Phyra71209;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 294508 297140 . - 0 ID=Phyra71209;Parent=Phyra71209;rank=2 scaffold_8 . exon 294508 297140 . - . ID=Phyra71209.2;Parent=Phyra71209;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 297223 299381 . - 0 ID=Phyra71209;Parent=Phyra71209;rank=1 scaffold_8 ensembl protein_coding_gene 287550 289139 . + . ID=Phyra74475;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000076;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 287550 289139 . + . ID=Phyra74475;Parent=Phyra74475;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 287550 289139 . + 0 ID=Phyra74475;Parent=Phyra74475;rank=1 scaffold_8 . exon 287550 289139 . + . ID=Phyra74475.1;Parent=Phyra74475;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 289760 292025 . - . ID=Phyra74476;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000077;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 289760 292025 . - . ID=Phyra74476;Parent=Phyra74476;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 289760 289972 . - 0 ID=Phyra74476;Parent=Phyra74476;rank=3 scaffold_8 . exon 289760 289972 . - . ID=Phyra74476.3;Parent=Phyra74476;constitutive=1;rank=3 scaffold_8 . CDS 290051 290917 . - 0 ID=Phyra74476;Parent=Phyra74476;rank=2 scaffold_8 . exon 290051 290917 . - . ID=Phyra74476.2;Parent=Phyra74476;constitutive=1;rank=2 scaffold_8 . CDS 291024 292025 . - 0 ID=Phyra74476;Parent=Phyra74476;rank=1 scaffold_8 . exon 291024 292025 . - . ID=Phyra74476.1;Parent=Phyra74476;constitutive=1;rank=1 scaffold_8 . exon 297223 299381 . - . ID=Phyra71209.1;Parent=Phyra71209;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 302232 303293 . + . ID=Phyra71210;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000016;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 302232 303293 . + . ID=Phyra71210;Parent=Phyra71210;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 302232 303293 . + 0 ID=Phyra71210;Parent=Phyra71210;rank=1 scaffold_8 . exon 302232 303293 . + . ID=Phyra71210.1;Parent=Phyra71210;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 299559 300195 . + . ID=Phyra74478;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000079;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 299559 300195 . + . ID=Phyra74478;Parent=Phyra74478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 299559 299709 . + 0 ID=Phyra74478;Parent=Phyra74478;rank=1 scaffold_8 . exon 299559 299709 . + . ID=Phyra74478.1;Parent=Phyra74478;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 299778 299935 . + 0 ID=Phyra74478;Parent=Phyra74478;rank=2 scaffold_8 . exon 299778 299935 . + . ID=Phyra74478.2;Parent=Phyra74478;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 300010 300195 . + 0 ID=Phyra74478;Parent=Phyra74478;rank=3 scaffold_8 . exon 300010 300195 . + . ID=Phyra74478.3;Parent=Phyra74478;constitutive=1;rank=3 scaffold_8 ensembl protein_coding_gene 300444 301979 . + . ID=Phyra74479;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000080;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 300444 301979 . + . ID=Phyra74479;Parent=Phyra74479;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 300444 300952 . + 0 ID=Phyra74479;Parent=Phyra74479;rank=1 scaffold_8 . exon 300444 300952 . + . ID=Phyra74479.1;Parent=Phyra74479;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 301020 301208 . + 0 ID=Phyra74479;Parent=Phyra74479;rank=2 scaffold_8 . exon 301020 301208 . + . ID=Phyra74479.2;Parent=Phyra74479;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_8 . CDS 301295 301452 . + 0 ID=Phyra74479;Parent=Phyra74479;rank=3 scaffold_8 . exon 301295 301452 . + . ID=Phyra74479.3;Parent=Phyra74479;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 301524 301786 . + 0 ID=Phyra74479;Parent=Phyra74479;rank=4 scaffold_8 . exon 301524 301786 . + . ID=Phyra74479.4;Parent=Phyra74479;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 301884 301979 . + 0 ID=Phyra74479;Parent=Phyra74479;rank=5 scaffold_8 . exon 301884 301979 . + . ID=Phyra74479.5;Parent=Phyra74479;constitutive=1;rank=5 scaffold_8 ensembl protein_coding_gene 303729 307282 . - . ID=Phyra74481;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000082;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 303729 307282 . - . ID=Phyra74481;Parent=Phyra74481;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 303729 303866 . - 0 ID=Phyra74481;Parent=Phyra74481;rank=2 scaffold_8 . exon 303729 303866 . - . ID=Phyra74481.2;Parent=Phyra74481;constitutive=1;rank=2 scaffold_8 . CDS 303935 307282 . - 0 ID=Phyra74481;Parent=Phyra74481;rank=1 scaffold_8 . exon 303935 307282 . - . ID=Phyra74481.1;Parent=Phyra74481;constitutive=1;rank=1 scaffold_8 . biological_region 307356 307360 0.999 + . logic_name=eponine scaffold_8 . repeat_region 308229 308272 . ? . description=trf scaffold_8 . biological_region 308924 308924 0.999 - . logic_name=eponine scaffold_8 . repeat_region 314646 314689 . ? . description=trf scaffold_8 . biological_region 316210 316212 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 314142 315260 . - . ID=Phyra71211;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000017;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 314142 315260 . - . ID=Phyra71211;Parent=Phyra71211;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 314142 315260 . - 0 ID=Phyra71211;Parent=Phyra71211;rank=1 scaffold_8 . exon 314142 315260 . - . ID=Phyra71211.1;Parent=Phyra71211;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 307725 309112 . - . ID=Phyra74482;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000083;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 307725 309112 . - . ID=Phyra74482;Parent=Phyra74482;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 307725 308936 . - 0 ID=Phyra74482;Parent=Phyra74482;rank=2 scaffold_8 . exon 307725 308936 . - . ID=Phyra74482.2;Parent=Phyra74482;constitutive=1;rank=2 scaffold_8 . CDS 309029 309112 . - 0 ID=Phyra74482;Parent=Phyra74482;rank=1 scaffold_8 . exon 309029 309112 . - . ID=Phyra74482.1;Parent=Phyra74482;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 316044 323173 . + . ID=Phyra74484;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000085;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 316044 323173 . + . ID=Phyra74484;Parent=Phyra74484;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 316044 316300 . + 0 ID=Phyra74484;Parent=Phyra74484;rank=1 scaffold_8 . exon 316044 316300 . + . ID=Phyra74484.1;Parent=Phyra74484;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 316371 317020 . + 0 ID=Phyra74484;Parent=Phyra74484;rank=2 scaffold_8 . exon 316371 317020 . + . ID=Phyra74484.2;Parent=Phyra74484;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 317096 317252 . + 0 ID=Phyra74484;Parent=Phyra74484;rank=3 scaffold_8 . CDS 317347 317400 . + 0 ID=Phyra74484;Parent=Phyra74484;rank=4 scaffold_8 . CDS 317509 317574 . + 0 ID=Phyra74484;Parent=Phyra74484;rank=5 scaffold_8 . CDS 317660 319190 . + 0 ID=Phyra74484;Parent=Phyra74484;rank=6 scaffold_8 . CDS 319269 319367 . + 0 ID=Phyra74484;Parent=Phyra74484;rank=7 scaffold_8 . CDS 319601 321004 . + 0 ID=Phyra74484;Parent=Phyra74484;rank=8 scaffold_8 . CDS 321428 322216 . + 0 ID=Phyra74484;Parent=Phyra74484;rank=9 scaffold_8 . CDS 322520 322655 . + 0 ID=Phyra74484;Parent=Phyra74484;rank=10 scaffold_8 . CDS 322750 322851 . + 0 ID=Phyra74484;Parent=Phyra74484;rank=11 scaffold_8 . CDS 322926 323173 . + 0 ID=Phyra74484;Parent=Phyra74484;rank=12 scaffold_8 . repeat_region 319232 319239 . ? . description=dust scaffold_8 . exon 317096 317252 . + . ID=Phyra74484.3;Parent=Phyra74484;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_8 . exon 317347 317400 . + . ID=Phyra74484.4;Parent=Phyra74484;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_8 . exon 317509 317574 . + . ID=Phyra74484.5;Parent=Phyra74484;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_8 . exon 317660 319190 . + . ID=Phyra74484.6;Parent=Phyra74484;constitutive=1;ensembl_phase=2;rank=6 scaffold_8 . exon 319269 319367 . + . ID=Phyra74484.7;Parent=Phyra74484;constitutive=1;rank=7 scaffold_8 . exon 319601 321004 . + . ID=Phyra74484.8;Parent=Phyra74484;constitutive=1;rank=8 scaffold_8 . exon 321428 322216 . + . ID=Phyra74484.9;Parent=Phyra74484;constitutive=1;rank=9 scaffold_8 . exon 322520 322655 . + . ID=Phyra74484.10;Parent=Phyra74484;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_8 . exon 322750 322851 . + . ID=Phyra74484.11;Parent=Phyra74484;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_8 . exon 322926 323173 . + . ID=Phyra74484.12;Parent=Phyra74484;constitutive=1;ensembl_phase=1;rank=12 scaffold_8 . repeat_region 331399 331445 . ? . description=trf scaffold_8 . repeat_region 331399 331453 . ? . description=trf scaffold_8 ensembl protein_coding_gene 327366 328119 . - . ID=Phyra74485;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000086;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 327366 328119 . - . ID=Phyra74485;Parent=Phyra74485;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 327366 327683 . - 0 ID=Phyra74485;Parent=Phyra74485;rank=3 scaffold_8 . exon 327366 327683 . - . ID=Phyra74485.3;Parent=Phyra74485;constitutive=1;rank=3 scaffold_8 . CDS 327926 327973 . - 0 ID=Phyra74485;Parent=Phyra74485;rank=2 scaffold_8 . exon 327926 327973 . - . ID=Phyra74485.2;Parent=Phyra74485;constitutive=1;rank=2 scaffold_8 . CDS 328042 328119 . - 0 ID=Phyra74485;Parent=Phyra74485;rank=1 scaffold_8 . exon 328042 328119 . - . ID=Phyra74485.1;Parent=Phyra74485;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 328487 329343 . + . ID=Phyra74486;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000087;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 328487 329343 . + . ID=Phyra74486;Parent=Phyra74486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 328487 328930 . + 0 ID=Phyra74486;Parent=Phyra74486;rank=1 scaffold_8 . exon 328487 328930 . + . ID=Phyra74486.1;Parent=Phyra74486;constitutive=1;rank=1 scaffold_8 . CDS 328990 329343 . + 0 ID=Phyra74486;Parent=Phyra74486;rank=2 scaffold_8 . exon 328990 329343 . + . ID=Phyra74486.2;Parent=Phyra74486;constitutive=1;rank=2 scaffold_8 ensembl protein_coding_gene 329679 331140 . - . ID=Phyra74487;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000088;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 329679 331140 . - . ID=Phyra74487;Parent=Phyra74487;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 329679 329771 . - 0 ID=Phyra74487;Parent=Phyra74487;rank=6 scaffold_8 . exon 329679 329771 . - . ID=Phyra74487.6;Parent=Phyra74487;constitutive=1;rank=6 scaffold_8 . CDS 329843 330133 . - 0 ID=Phyra74487;Parent=Phyra74487;rank=5 scaffold_8 . exon 329843 330133 . - . ID=Phyra74487.5;Parent=Phyra74487;constitutive=1;rank=5 scaffold_8 . CDS 330218 330331 . - 0 ID=Phyra74487;Parent=Phyra74487;rank=4 scaffold_8 . exon 330218 330331 . - . ID=Phyra74487.4;Parent=Phyra74487;constitutive=1;rank=4 scaffold_8 . CDS 330418 330728 . - 0 ID=Phyra74487;Parent=Phyra74487;rank=3 scaffold_8 . exon 330418 330728 . - . ID=Phyra74487.3;Parent=Phyra74487;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 330810 330945 . - 0 ID=Phyra74487;Parent=Phyra74487;rank=2 scaffold_8 . exon 330810 330945 . - . ID=Phyra74487.2;Parent=Phyra74487;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 331012 331140 . - 0 ID=Phyra74487;Parent=Phyra74487;rank=1 scaffold_8 . exon 331012 331140 . - . ID=Phyra74487.1;Parent=Phyra74487;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 332627 335880 . + . ID=Phyra93807;biotype=protein_coding;external_name=C_scaffold_8000003;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 332627 335880 . + . ID=Phyra93807;Parent=Phyra93807;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . exon 332627 333021 . + . ID=Phyra93807.1;Parent=Phyra93807;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_8 . CDS 332628 333021 . + 0 ID=Phyra93807;Parent=Phyra93807;rank=1 scaffold_8 . CDS 333043 333186 . + 0 ID=Phyra93807;Parent=Phyra93807;rank=2 scaffold_8 . exon 333043 333186 . + . ID=Phyra93807.2;Parent=Phyra93807;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 333928 334060 . + 0 ID=Phyra93807;Parent=Phyra93807;rank=3 scaffold_8 . exon 333928 334060 . + . ID=Phyra93807.3;Parent=Phyra93807;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_8 . CDS 334131 334167 . + 0 ID=Phyra93807;Parent=Phyra93807;rank=4 scaffold_8 . exon 334131 334167 . + . ID=Phyra93807.4;Parent=Phyra93807;constitutive=1;ensembl_phase=2;rank=4 scaffold_8 . CDS 334696 335070 . + 0 ID=Phyra93807;Parent=Phyra93807;rank=5 scaffold_8 . exon 334696 335070 . + . ID=Phyra93807.5;Parent=Phyra93807;constitutive=1;rank=5 scaffold_8 . CDS 335144 335215 . + 0 ID=Phyra93807;Parent=Phyra93807;rank=6 scaffold_8 . exon 335144 335215 . + . ID=Phyra93807.6;Parent=Phyra93807;constitutive=1;rank=6 scaffold_8 . CDS 335287 335397 . + 0 ID=Phyra93807;Parent=Phyra93807;rank=7 scaffold_8 . exon 335287 335397 . + . ID=Phyra93807.7;Parent=Phyra93807;constitutive=1;rank=7 scaffold_8 . CDS 335442 335538 . + 0 ID=Phyra93807;Parent=Phyra93807;rank=8 scaffold_8 . exon 335442 335538 . + . ID=Phyra93807.8;Parent=Phyra93807;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_8 . CDS 335602 335715 . + 0 ID=Phyra93807;Parent=Phyra93807;rank=9 scaffold_8 . exon 335602 335715 . + . ID=Phyra93807.9;Parent=Phyra93807;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_8 . CDS 335789 335880 . + 0 ID=Phyra93807;Parent=Phyra93807;rank=10 scaffold_8 . exon 335789 335880 . + . ID=Phyra93807.10;Parent=Phyra93807;constitutive=1;ensembl_phase=1;rank=10 scaffold_8 ensembl protein_coding_gene 336411 337793 . - . ID=Phyra93808;biotype=protein_coding;external_name=C_scaffold_8000004;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 336411 337793 . - . ID=Phyra93808;Parent=Phyra93808;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 336411 336894 . - 0 ID=Phyra93808;Parent=Phyra93808;rank=6 scaffold_8 . exon 336411 336894 . - . ID=Phyra93808.6;Parent=Phyra93808;constitutive=1;ensembl_phase=2;rank=6 scaffold_8 . CDS 336966 337057 . - 0 ID=Phyra93808;Parent=Phyra93808;rank=5 scaffold_8 . CDS 337144 337347 . - 0 ID=Phyra93808;Parent=Phyra93808;rank=4 scaffold_8 . CDS 337412 337493 . - 0 ID=Phyra93808;Parent=Phyra93808;rank=3 scaffold_8 . CDS 337555 337711 . - 0 ID=Phyra93808;Parent=Phyra93808;rank=2 scaffold_8 . CDS 337775 337793 . - 0 ID=Phyra93808;Parent=Phyra93808;rank=1 scaffold_8 . biological_region 339713 339715 0.999 - . logic_name=eponine scaffold_8 . biological_region 340193 340194 0.999 + . logic_name=eponine scaffold_8 . biological_region 340388 340388 0.999 + . logic_name=eponine scaffold_8 . biological_region 342870 342871 0.999 + . logic_name=eponine scaffold_8 . biological_region 343856 343857 0.999 - . logic_name=eponine scaffold_8 . biological_region 344302 344304 0.999 + . logic_name=eponine scaffold_8 . biological_region 344319 344323 0.999 - . logic_name=eponine scaffold_8 . biological_region 344346 344350 0.999 - . logic_name=eponine scaffold_8 . biological_region 344402 344404 0.999 + . logic_name=eponine scaffold_8 . biological_region 344605 344609 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 337929 339213 . + . ID=Phyra74491;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000092;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 337929 339213 . + . ID=Phyra74491;Parent=Phyra74491;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 337929 338885 . + 0 ID=Phyra74491;Parent=Phyra74491;rank=1 scaffold_8 . exon 337929 338885 . + . ID=Phyra74491.1;Parent=Phyra74491;constitutive=1;rank=1 scaffold_8 . CDS 338952 339118 . + 0 ID=Phyra74491;Parent=Phyra74491;rank=2 scaffold_8 . exon 338952 339118 . + . ID=Phyra74491.2;Parent=Phyra74491;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 339156 339213 . + 0 ID=Phyra74491;Parent=Phyra74491;rank=3 scaffold_8 . exon 339156 339213 . + . ID=Phyra74491.3;Parent=Phyra74491;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 ensembl protein_coding_gene 339430 339877 . - . ID=Phyra74492;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000093;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 339430 339877 . - . ID=Phyra74492;Parent=Phyra74492;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 339430 339689 . - 0 ID=Phyra74492;Parent=Phyra74492;rank=2 scaffold_8 . exon 339430 339689 . - . ID=Phyra74492.2;Parent=Phyra74492;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 339793 339877 . - 0 ID=Phyra74492;Parent=Phyra74492;rank=1 scaffold_8 . exon 339793 339877 . - . ID=Phyra74492.1;Parent=Phyra74492;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 340166 342361 . + . ID=Phyra74493;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000094;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 340166 342361 . + . ID=Phyra74493;Parent=Phyra74493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 340166 342361 . + 0 ID=Phyra74493;Parent=Phyra74493;rank=1 scaffold_8 . exon 340166 342361 . + . ID=Phyra74493.1;Parent=Phyra74493;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 342560 343045 . + . ID=Phyra74494;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000095;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 342560 343045 . + . ID=Phyra74494;Parent=Phyra74494;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 342560 343045 . + 0 ID=Phyra74494;Parent=Phyra74494;rank=1 scaffold_8 . exon 342560 343045 . + . ID=Phyra74494.1;Parent=Phyra74494;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 343781 344569 . - . ID=Phyra74495;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000096;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 343781 344569 . - . ID=Phyra74495;Parent=Phyra74495;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 343781 344569 . - 0 ID=Phyra74495;Parent=Phyra74495;rank=1 scaffold_8 . exon 343781 344569 . - . ID=Phyra74495.1;Parent=Phyra74495;constitutive=1;rank=1 scaffold_8 . exon 336966 337057 . - . ID=Phyra93808.5;Parent=Phyra93808;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_8 . exon 337144 337347 . - . ID=Phyra93808.4;Parent=Phyra93808;constitutive=1;rank=4 scaffold_8 . exon 337412 337493 . - . ID=Phyra93808.3;Parent=Phyra93808;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . exon 337555 337711 . - . ID=Phyra93808.2;Parent=Phyra93808;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_8 . exon 337775 337793 . - . ID=Phyra93808.1;Parent=Phyra93808;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . repeat_region 355921 355940 . ? . description=dust scaffold_8 . repeat_region 356177 356200 . ? . description=dust scaffold_8 ensembl protein_coding_gene 354733 355894 . - . ID=Phyra53255;biotype=protein_coding;external_name=gwEuk.8.54.1;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 354733 355894 . - . ID=Phyra53255;Parent=Phyra53255;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 354733 354847 . - 0 ID=Phyra53255;Parent=Phyra53255;rank=4 scaffold_8 . exon 354733 354847 . - . ID=Phyra53255.4;Parent=Phyra53255;constitutive=1;ensembl_phase=2;rank=4 scaffold_8 . CDS 354928 355192 . - 0 ID=Phyra53255;Parent=Phyra53255;rank=3 scaffold_8 . exon 354928 355192 . - . ID=Phyra53255.3;Parent=Phyra53255;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_8 . CDS 355259 355691 . - 0 ID=Phyra53255;Parent=Phyra53255;rank=2 scaffold_8 . exon 355259 355691 . - . ID=Phyra53255.2;Parent=Phyra53255;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 355772 355894 . - 0 ID=Phyra53255;Parent=Phyra53255;rank=1 scaffold_8 . exon 355772 355894 . - . ID=Phyra53255.1;Parent=Phyra53255;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 346946 351600 . - . ID=Phyra74496;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000097;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 346946 351600 . - . ID=Phyra74496;Parent=Phyra74496;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 346946 350821 . - 0 ID=Phyra74496;Parent=Phyra74496;rank=3 scaffold_8 . exon 346946 350821 . - . ID=Phyra74496.3;Parent=Phyra74496;constitutive=1;rank=3 scaffold_8 . CDS 350912 351401 . - 0 ID=Phyra74496;Parent=Phyra74496;rank=2 scaffold_8 . exon 350912 351401 . - . ID=Phyra74496.2;Parent=Phyra74496;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 351473 351600 . - 0 ID=Phyra74496;Parent=Phyra74496;rank=1 scaffold_8 . exon 351473 351600 . - . ID=Phyra74496.1;Parent=Phyra74496;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . biological_region 359551 359554 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 357016 359280 . + . ID=Phyra74498;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000099;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 357016 359280 . + . ID=Phyra74498;Parent=Phyra74498;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 357016 359280 . + 0 ID=Phyra74498;Parent=Phyra74498;rank=1 scaffold_8 . exon 357016 359280 . + . ID=Phyra74498.1;Parent=Phyra74498;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 361980 366688 . - . ID=Phyra74499;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000100;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 361980 366688 . - . ID=Phyra74499;Parent=Phyra74499;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 361980 363748 . - 0 ID=Phyra74499;Parent=Phyra74499;rank=5 scaffold_8 . exon 361980 363748 . - . ID=Phyra74499.5;Parent=Phyra74499;constitutive=1;ensembl_phase=1;rank=5 scaffold_8 . CDS 363773 363835 . - 0 ID=Phyra74499;Parent=Phyra74499;rank=4 scaffold_8 . exon 363773 363835 . - . ID=Phyra74499.4;Parent=Phyra74499;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 363878 364208 . - 0 ID=Phyra74499;Parent=Phyra74499;rank=3 scaffold_8 . exon 363878 364208 . - . ID=Phyra74499.3;Parent=Phyra74499;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . CDS 364254 366251 . - 0 ID=Phyra74499;Parent=Phyra74499;rank=2 scaffold_8 . exon 364254 366251 . - . ID=Phyra74499.2;Parent=Phyra74499;constitutive=1;rank=2 scaffold_8 . CDS 366293 366688 . - 0 ID=Phyra74499;Parent=Phyra74499;rank=1 scaffold_8 . repeat_region 366159 366212 . ? . description=trf scaffold_8 . exon 366293 366688 . - . ID=Phyra74499.1;Parent=Phyra74499;constitutive=1;rank=1 scaffold_8 . biological_region 381433 381438 0.999 - . logic_name=eponine scaffold_8 . biological_region 381576 381579 0.999 - . logic_name=eponine scaffold_8 . biological_region 381950 381953 0.999 - . logic_name=eponine scaffold_8 . biological_region 382038 382045 0.999 + . logic_name=eponine scaffold_8 . biological_region 382045 382047 0.999 - . logic_name=eponine scaffold_8 . biological_region 382360 382361 0.999 + . logic_name=eponine scaffold_8 . biological_region 382454 382459 0.999 - . logic_name=eponine scaffold_8 . biological_region 382633 382637 0.999 - . logic_name=eponine scaffold_8 . biological_region 382812 382815 0.999 - . logic_name=eponine scaffold_8 . biological_region 383135 383139 0.999 - . logic_name=eponine scaffold_8 . biological_region 383736 383739 0.999 - . logic_name=eponine scaffold_8 . biological_region 384304 384311 0.999 - . logic_name=eponine scaffold_8 . biological_region 384747 384748 0.999 - . logic_name=eponine scaffold_8 . biological_region 384772 384778 0.999 - . logic_name=eponine scaffold_8 . biological_region 385233 385235 0.999 - . logic_name=eponine scaffold_8 . biological_region 385879 385883 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 377495 380445 . - . ID=Phyra74500;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000101;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 377495 380445 . - . ID=Phyra74500;Parent=Phyra74500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 377495 377563 . - 0 ID=Phyra74500;Parent=Phyra74500;rank=2 scaffold_8 . exon 377495 377563 . - . ID=Phyra74500.2;Parent=Phyra74500;constitutive=1;rank=2 scaffold_8 . CDS 377677 380445 . - 0 ID=Phyra74500;Parent=Phyra74500;rank=1 scaffold_8 . exon 377677 380445 . - . ID=Phyra74500.1;Parent=Phyra74500;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 382145 382633 . + . ID=Phyra74501;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000102;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 382145 382633 . + . ID=Phyra74501;Parent=Phyra74501;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 382145 382633 . + 0 ID=Phyra74501;Parent=Phyra74501;rank=1 scaffold_8 . exon 382145 382633 . + . ID=Phyra74501.1;Parent=Phyra74501;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 383503 383973 . + . ID=Phyra74502;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000103;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 383503 383973 . + . ID=Phyra74502;Parent=Phyra74502;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 383503 383973 . + 0 ID=Phyra74502;Parent=Phyra74502;rank=1 scaffold_8 . exon 383503 383973 . + . ID=Phyra74502.1;Parent=Phyra74502;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 385064 387735 . + . ID=Phyra74503;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000104;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 385064 387735 . + . ID=Phyra74503;Parent=Phyra74503;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 385064 385664 . + 0 ID=Phyra74503;Parent=Phyra74503;rank=1 scaffold_8 . exon 385064 385664 . + . ID=Phyra74503.1;Parent=Phyra74503;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 385858 385929 . + 0 ID=Phyra74503;Parent=Phyra74503;rank=2 scaffold_8 . exon 385858 385929 . + . ID=Phyra74503.2;Parent=Phyra74503;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 385986 386203 . + 0 ID=Phyra74503;Parent=Phyra74503;rank=3 scaffold_8 . CDS 386273 386777 . + 0 ID=Phyra74503;Parent=Phyra74503;rank=4 scaffold_8 . CDS 386882 387052 . + 0 ID=Phyra74503;Parent=Phyra74503;rank=5 scaffold_8 . CDS 387200 387735 . + 0 ID=Phyra74503;Parent=Phyra74503;rank=6 scaffold_8 . repeat_region 386393 386400 . ? . description=dust scaffold_8 . exon 385986 386203 . + . ID=Phyra74503.3;Parent=Phyra74503;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . exon 386273 386777 . + . ID=Phyra74503.4;Parent=Phyra74503;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_8 . exon 386882 387052 . + . ID=Phyra74503.5;Parent=Phyra74503;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_8 . exon 387200 387735 . + . ID=Phyra74503.6;Parent=Phyra74503;constitutive=1;ensembl_phase=1;rank=6 scaffold_8 ensembl protein_coding_gene 392688 393384 . - . ID=Phyra74504;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000105;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 392688 393384 . - . ID=Phyra74504;Parent=Phyra74504;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 392688 392867 . - 0 ID=Phyra74504;Parent=Phyra74504;rank=4 scaffold_8 . exon 392688 392867 . - . ID=Phyra74504.4;Parent=Phyra74504;constitutive=1;rank=4 scaffold_8 . CDS 392937 393080 . - 0 ID=Phyra74504;Parent=Phyra74504;rank=3 scaffold_8 . exon 392937 393080 . - . ID=Phyra74504.3;Parent=Phyra74504;constitutive=1;rank=3 scaffold_8 . CDS 393152 393216 . - 0 ID=Phyra74504;Parent=Phyra74504;rank=2 scaffold_8 . exon 393152 393216 . - . ID=Phyra74504.2;Parent=Phyra74504;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 393297 393384 . - 0 ID=Phyra74504;Parent=Phyra74504;rank=1 scaffold_8 . exon 393297 393384 . - . ID=Phyra74504.1;Parent=Phyra74504;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . biological_region 396959 396963 0.999 + . logic_name=eponine scaffold_8 . biological_region 397517 397519 0.999 + . logic_name=eponine scaffold_8 . biological_region 398373 398376 0.999 - . logic_name=eponine scaffold_8 . biological_region 398430 398430 0.999 + . logic_name=eponine scaffold_8 . repeat_region 398642 398674 . ? . description=trf scaffold_8 . biological_region 399160 399164 0.999 - . logic_name=eponine scaffold_8 . biological_region 399234 399237 0.999 - . logic_name=eponine scaffold_8 . biological_region 399631 399633 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 397173 399860 . + . ID=Phyra93809;biotype=protein_coding;external_name=C_scaffold_8000005;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 397173 399860 . + . ID=Phyra93809;Parent=Phyra93809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 397173 397353 . + 0 ID=Phyra93809;Parent=Phyra93809;rank=1 scaffold_8 . exon 397173 397353 . + . ID=Phyra93809.1;Parent=Phyra93809;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 397612 398132 . + 0 ID=Phyra93809;Parent=Phyra93809;rank=2 scaffold_8 . exon 397612 398132 . + . ID=Phyra93809.2;Parent=Phyra93809;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 398178 398562 . + 0 ID=Phyra93809;Parent=Phyra93809;rank=3 scaffold_8 . exon 398178 398562 . + . ID=Phyra93809.3;Parent=Phyra93809;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . CDS 398653 398800 . + 0 ID=Phyra93809;Parent=Phyra93809;rank=4 scaffold_8 . exon 398653 398800 . + . ID=Phyra93809.4;Parent=Phyra93809;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_8 . CDS 398973 399216 . + 0 ID=Phyra93809;Parent=Phyra93809;rank=5 scaffold_8 . exon 398973 399216 . + . ID=Phyra93809.5;Parent=Phyra93809;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 399282 399860 . + 0 ID=Phyra93809;Parent=Phyra93809;rank=6 scaffold_8 . exon 399282 399860 . + . ID=Phyra93809.6;Parent=Phyra93809;constitutive=1;rank=6 scaffold_8 ensembl protein_coding_gene 407938 408738 . - . ID=Phyra74508;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000109;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 407938 408738 . - . ID=Phyra74508;Parent=Phyra74508;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 407938 408738 . - 0 ID=Phyra74508;Parent=Phyra74508;rank=1 scaffold_8 . exon 407938 408738 . - . ID=Phyra74508.1;Parent=Phyra74508;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 413891 414689 . + . ID=Phyra74512;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000113;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 413891 414689 . + . ID=Phyra74512;Parent=Phyra74512;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 413891 414451 . + 0 ID=Phyra74512;Parent=Phyra74512;rank=1 scaffold_8 . exon 413891 414451 . + . ID=Phyra74512.1;Parent=Phyra74512;constitutive=1;rank=1 scaffold_8 . CDS 414483 414689 . + 0 ID=Phyra74512;Parent=Phyra74512;rank=2 scaffold_8 . exon 414483 414689 . + . ID=Phyra74512.2;Parent=Phyra74512;constitutive=1;rank=2 scaffold_8 ensembl protein_coding_gene 414974 416017 . - . ID=Phyra74513;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000114;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 414974 416017 . - . ID=Phyra74513;Parent=Phyra74513;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 414974 415565 . - 0 ID=Phyra74513;Parent=Phyra74513;rank=2 scaffold_8 . exon 414974 415565 . - . ID=Phyra74513.2;Parent=Phyra74513;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 415638 416017 . - 0 ID=Phyra74513;Parent=Phyra74513;rank=1 scaffold_8 ensembl protein_coding_gene 409363 409824 . + . ID=Phyra93811;biotype=protein_coding;external_name=C_scaffold_8000007;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 409363 409824 . + . ID=Phyra93811;Parent=Phyra93811;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 409363 409824 . + 0 ID=Phyra93811;Parent=Phyra93811;rank=1 scaffold_8 . exon 409363 409824 . + . ID=Phyra93811.1;Parent=Phyra93811;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 410037 411698 . + . ID=Phyra93812;biotype=protein_coding;external_name=C_scaffold_8000008;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 410037 411698 . + . ID=Phyra93812;Parent=Phyra93812;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 410037 410492 . + 0 ID=Phyra93812;Parent=Phyra93812;rank=1 scaffold_8 . exon 410037 410492 . + . ID=Phyra93812.1;Parent=Phyra93812;constitutive=1;rank=1 scaffold_8 . CDS 410563 410657 . + 0 ID=Phyra93812;Parent=Phyra93812;rank=2 scaffold_8 . exon 410563 410657 . + . ID=Phyra93812.2;Parent=Phyra93812;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 410729 410821 . + 0 ID=Phyra93812;Parent=Phyra93812;rank=3 scaffold_8 . exon 410729 410821 . + . ID=Phyra93812.3;Parent=Phyra93812;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_8 . CDS 410898 410988 . + 0 ID=Phyra93812;Parent=Phyra93812;rank=4 scaffold_8 . exon 410898 410988 . + . ID=Phyra93812.4;Parent=Phyra93812;constitutive=1;ensembl_phase=2;rank=4 scaffold_8 . CDS 411031 411099 . + 0 ID=Phyra93812;Parent=Phyra93812;rank=5 scaffold_8 . exon 411031 411099 . + . ID=Phyra93812.5;Parent=Phyra93812;constitutive=1;rank=5 scaffold_8 . CDS 411173 411567 . + 0 ID=Phyra93812;Parent=Phyra93812;rank=6 scaffold_8 . exon 411173 411567 . + . ID=Phyra93812.6;Parent=Phyra93812;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_8 . CDS 411650 411698 . + 0 ID=Phyra93812;Parent=Phyra93812;rank=7 scaffold_8 . exon 411650 411698 . + . ID=Phyra93812.7;Parent=Phyra93812;constitutive=1;ensembl_phase=2;rank=7 scaffold_8 ensembl protein_coding_gene 411839 413375 . - . ID=Phyra93814;biotype=protein_coding;external_name=C_scaffold_8000010;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 411839 413375 . - . ID=Phyra93814;Parent=Phyra93814;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 411839 411936 . - 0 ID=Phyra93814;Parent=Phyra93814;rank=4 scaffold_8 . exon 411839 411936 . - . ID=Phyra93814.4;Parent=Phyra93814;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 412003 412109 . - 0 ID=Phyra93814;Parent=Phyra93814;rank=3 scaffold_8 . exon 412003 412109 . - . ID=Phyra93814.3;Parent=Phyra93814;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 412485 412843 . - 0 ID=Phyra93814;Parent=Phyra93814;rank=2 scaffold_8 . exon 412485 412843 . - . ID=Phyra93814.2;Parent=Phyra93814;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 412917 413375 . - 0 ID=Phyra93814;Parent=Phyra93814;rank=1 scaffold_8 . exon 412917 413375 . - . ID=Phyra93814.1;Parent=Phyra93814;constitutive=1;rank=1 scaffold_8 . repeat_region 417886 417895 . ? . description=dust scaffold_8 . biological_region 422153 422154 0.999 + . logic_name=eponine scaffold_8 . exon 415638 416017 . - . ID=Phyra74513.1;Parent=Phyra74513;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 417902 419635 . - . ID=Phyra74514;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000115;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 417902 419635 . - . ID=Phyra74514;Parent=Phyra74514;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 417902 419635 . - 0 ID=Phyra74514;Parent=Phyra74514;rank=1 scaffold_8 . exon 417902 419635 . - . ID=Phyra74514.1;Parent=Phyra74514;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 426399 427705 . + . ID=Phyra74515;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000116;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 426399 427705 . + . ID=Phyra74515;Parent=Phyra74515;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 426399 426530 . + 0 ID=Phyra74515;Parent=Phyra74515;rank=1 scaffold_8 . exon 426399 426530 . + . ID=Phyra74515.1;Parent=Phyra74515;constitutive=1;rank=1 scaffold_8 . CDS 426600 426889 . + 0 ID=Phyra74515;Parent=Phyra74515;rank=2 scaffold_8 . exon 426600 426889 . + . ID=Phyra74515.2;Parent=Phyra74515;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 426973 427705 . + 0 ID=Phyra74515;Parent=Phyra74515;rank=3 scaffold_8 . exon 426973 427705 . + . ID=Phyra74515.3;Parent=Phyra74515;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 ensembl protein_coding_gene 427851 429110 . - . ID=Phyra74516;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000117;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 427851 429110 . - . ID=Phyra74516;Parent=Phyra74516;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 427851 428147 . - 0 ID=Phyra74516;Parent=Phyra74516;rank=4 scaffold_8 . exon 427851 428147 . - . ID=Phyra74516.4;Parent=Phyra74516;constitutive=1;rank=4 scaffold_8 . CDS 428230 428747 . - 0 ID=Phyra74516;Parent=Phyra74516;rank=3 scaffold_8 . exon 428230 428747 . - . ID=Phyra74516.3;Parent=Phyra74516;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 428821 428948 . - 0 ID=Phyra74516;Parent=Phyra74516;rank=2 scaffold_8 . exon 428821 428948 . - . ID=Phyra74516.2;Parent=Phyra74516;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 429031 429110 . - 0 ID=Phyra74516;Parent=Phyra74516;rank=1 scaffold_8 . exon 429031 429110 . - . ID=Phyra74516.1;Parent=Phyra74516;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 430534 432105 . - . ID=Phyra74517;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000118;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 430534 432105 . - . ID=Phyra74517;Parent=Phyra74517;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 430534 431584 . - 0 ID=Phyra74517;Parent=Phyra74517;rank=3 scaffold_8 . exon 430534 431584 . - . ID=Phyra74517.3;Parent=Phyra74517;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 431663 431737 . - 0 ID=Phyra74517;Parent=Phyra74517;rank=2 scaffold_8 . exon 431663 431737 . - . ID=Phyra74517.2;Parent=Phyra74517;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_8 . CDS 431807 432105 . - 0 ID=Phyra74517;Parent=Phyra74517;rank=1 scaffold_8 . exon 431807 432105 . - . ID=Phyra74517.1;Parent=Phyra74517;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 432348 433465 . + . ID=Phyra74518;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000119;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 432348 433465 . + . ID=Phyra74518;Parent=Phyra74518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 432348 432477 . + 0 ID=Phyra74518;Parent=Phyra74518;rank=1 scaffold_8 . exon 432348 432477 . + . ID=Phyra74518.1;Parent=Phyra74518;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 432561 433465 . + 0 ID=Phyra74518;Parent=Phyra74518;rank=2 scaffold_8 . exon 432561 433465 . + . ID=Phyra74518.2;Parent=Phyra74518;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 ensembl protein_coding_gene 433776 434700 . + . ID=Phyra74519;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000120;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 433776 434700 . + . ID=Phyra74519;Parent=Phyra74519;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 433776 434043 . + 0 ID=Phyra74519;Parent=Phyra74519;rank=1 scaffold_8 . exon 433776 434043 . + . ID=Phyra74519.1;Parent=Phyra74519;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 434125 434207 . + 0 ID=Phyra74519;Parent=Phyra74519;rank=2 scaffold_8 . exon 434125 434207 . + . ID=Phyra74519.2;Parent=Phyra74519;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 434280 434355 . + 0 ID=Phyra74519;Parent=Phyra74519;rank=3 scaffold_8 . exon 434280 434355 . + . ID=Phyra74519.3;Parent=Phyra74519;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . CDS 434393 434700 . + 0 ID=Phyra74519;Parent=Phyra74519;rank=4 scaffold_8 . exon 434393 434700 . + . ID=Phyra74519.4;Parent=Phyra74519;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 ensembl protein_coding_gene 429502 430495 . + . ID=Phyra93816;biotype=protein_coding;external_name=C_scaffold_8000012;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 429502 430495 . + . ID=Phyra93816;Parent=Phyra93816;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 429502 429546 . + 0 ID=Phyra93816;Parent=Phyra93816;rank=1 scaffold_8 . exon 429502 429546 . + . ID=Phyra93816.1;Parent=Phyra93816;constitutive=1;rank=1 scaffold_8 . CDS 429743 430382 . + 0 ID=Phyra93816;Parent=Phyra93816;rank=2 scaffold_8 . exon 429743 430382 . + . ID=Phyra93816.2;Parent=Phyra93816;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 430410 430495 . + 0 ID=Phyra93816;Parent=Phyra93816;rank=3 scaffold_8 . exon 430410 430495 . + . ID=Phyra93816.3;Parent=Phyra93816;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . biological_region 436271 436274 0.999 - . logic_name=eponine scaffold_8 . biological_region 443571 443574 0.999 - . logic_name=eponine scaffold_8 . biological_region 443593 443596 0.999 - . logic_name=eponine scaffold_8 . biological_region 443816 443822 0.999 - . logic_name=eponine scaffold_8 . biological_region 444337 444337 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 436028 436291 . - . ID=Phyra53264;biotype=protein_coding;external_name=gwEuk.8.63.1;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 436028 436291 . - . ID=Phyra53264;Parent=Phyra53264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 436028 436291 . - 0 ID=Phyra53264;Parent=Phyra53264;rank=1 scaffold_8 . exon 436028 436291 . - . ID=Phyra53264.1;Parent=Phyra53264;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 442130 442786 . - . ID=Phyra74520;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000121;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 442130 442786 . - . ID=Phyra74520;Parent=Phyra74520;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 442130 442141 . - 0 ID=Phyra74520;Parent=Phyra74520;rank=3 scaffold_8 . exon 442130 442141 . - . ID=Phyra74520.3;Parent=Phyra74520;constitutive=1;rank=3 scaffold_8 . CDS 442307 442565 . - 0 ID=Phyra74520;Parent=Phyra74520;rank=2 scaffold_8 . exon 442307 442565 . - . ID=Phyra74520.2;Parent=Phyra74520;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 442638 442786 . - 0 ID=Phyra74520;Parent=Phyra74520;rank=1 scaffold_8 . exon 442638 442786 . - . ID=Phyra74520.1;Parent=Phyra74520;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 443064 443834 . + . ID=Phyra74521;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000122;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 443064 443834 . + . ID=Phyra74521;Parent=Phyra74521;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 443064 443393 . + 0 ID=Phyra74521;Parent=Phyra74521;rank=1 scaffold_8 . exon 443064 443393 . + . ID=Phyra74521.1;Parent=Phyra74521;constitutive=1;rank=1 scaffold_8 . CDS 443478 443834 . + 0 ID=Phyra74521;Parent=Phyra74521;rank=2 scaffold_8 . exon 443478 443834 . + . ID=Phyra74521.2;Parent=Phyra74521;constitutive=1;rank=2 scaffold_8 . repeat_region 447461 447487 . ? . description=dust scaffold_8 . repeat_region 447999 448007 . ? . description=dust scaffold_8 . repeat_region 452733 459858 . ? . description=dust scaffold_8 . repeat_region 464068 464087 . ? . description=trf scaffold_8 . repeat_region 465181 465189 . ? . description=dust scaffold_8 . repeat_region 465500 465508 . ? . description=dust scaffold_8 . repeat_region 474559 474571 . ? . description=dust scaffold_8 . repeat_region 475313 475337 . ? . description=trf scaffold_8 . repeat_region 476569 476637 . ? . description=trf scaffold_8 . repeat_region 476570 476643 . ? . description=trf scaffold_8 . repeat_region 478885 478952 . ? . description=trf scaffold_8 . repeat_region 478896 478950 . ? . description=trf scaffold_8 . repeat_region 481809 481834 . ? . description=trf scaffold_8 ensembl tRNA_gene 478286 478359 . + . ID=EPrPRAG00000000057;biotype=tRNA;description=tRNA-Ile for anticodon UAU [Source:TRNASCAN_SE%3BAcc:tRNA-Ile];external_name=tRNA-Ile;logic_name=ncrna_eg scaffold_8 ensembl transcript 478286 478359 . + . ID=EPrPRAT00000000057;Parent=EPrPRAG00000000057;biotype=tRNA;logic_name=ncrna_eg scaffold_8 ensembl tRNA_gene 477177 477250 . - . ID=EPrPRAG00000000210;biotype=tRNA;description=tRNA-Ile for anticodon UAU [Source:TRNASCAN_SE%3BAcc:tRNA-Ile];external_name=tRNA-Ile;logic_name=ncrna_eg scaffold_8 ensembl transcript 477177 477250 . - . ID=EPrPRAT00000000210;Parent=EPrPRAG00000000210;biotype=tRNA;logic_name=ncrna_eg scaffold_8 . exon 478286 478359 . + . ID=EPrPRAE00000000057;Parent=EPrPRAT00000000057;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . exon 477177 477250 . - . ID=EPrPRAE00000000210;Parent=EPrPRAT00000000210;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 484379 485917 . - . ID=Phyra74522;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000123;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 484379 485917 . - . ID=Phyra74522;Parent=Phyra74522;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 484379 485505 . - 0 ID=Phyra74522;Parent=Phyra74522;rank=3 scaffold_8 . exon 484379 485505 . - . ID=Phyra74522.3;Parent=Phyra74522;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 485579 485712 . - 0 ID=Phyra74522;Parent=Phyra74522;rank=2 scaffold_8 . CDS 485886 485917 . - 0 ID=Phyra74522;Parent=Phyra74522;rank=1 scaffold_8 . biological_region 485514 485515 0.999 + . logic_name=eponine scaffold_8 . repeat_region 486325 486335 . ? . description=dust scaffold_8 . exon 485579 485712 . - . ID=Phyra74522.2;Parent=Phyra74522;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_8 . exon 485886 485917 . - . ID=Phyra74522.1;Parent=Phyra74522;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 493158 494835 . - . ID=Phyra74523;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000124;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 493158 494835 . - . ID=Phyra74523;Parent=Phyra74523;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 493158 493171 . - 0 ID=Phyra74523;Parent=Phyra74523;rank=4 scaffold_8 . exon 493158 493171 . - . ID=Phyra74523.4;Parent=Phyra74523;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 493204 493424 . - 0 ID=Phyra74523;Parent=Phyra74523;rank=3 scaffold_8 . exon 493204 493424 . - . ID=Phyra74523.3;Parent=Phyra74523;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 493966 494027 . - 0 ID=Phyra74523;Parent=Phyra74523;rank=2 scaffold_8 . exon 493966 494027 . - . ID=Phyra74523.2;Parent=Phyra74523;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 494113 494835 . - 0 ID=Phyra74523;Parent=Phyra74523;rank=1 scaffold_8 . exon 494113 494835 . - . ID=Phyra74523.1;Parent=Phyra74523;constitutive=1;rank=1 scaffold_8 . repeat_region 495871 495920 . ? . description=trf scaffold_8 ensembl protein_coding_gene 500644 502300 . - . ID=Phyra53278;biotype=protein_coding;external_name=gwEuk.8.77.1;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 500644 502300 . - . ID=Phyra53278;Parent=Phyra53278;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 500644 501726 . - 0 ID=Phyra53278;Parent=Phyra53278;rank=2 scaffold_8 . exon 500644 501726 . - . ID=Phyra53278.2;Parent=Phyra53278;constitutive=1;rank=2 scaffold_8 . CDS 501785 502300 . - 0 ID=Phyra53278;Parent=Phyra53278;rank=1 scaffold_8 . exon 501785 502300 . - . ID=Phyra53278.1;Parent=Phyra53278;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 497867 498298 . + . ID=Phyra71215;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000021;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 497867 498298 . + . ID=Phyra71215;Parent=Phyra71215;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 497867 498007 . + 0 ID=Phyra71215;Parent=Phyra71215;rank=1 scaffold_8 . exon 497867 498007 . + . ID=Phyra71215.1;Parent=Phyra71215;constitutive=1;rank=1 scaffold_8 . CDS 498092 498298 . + 0 ID=Phyra71215;Parent=Phyra71215;rank=2 scaffold_8 . exon 498092 498298 . + . ID=Phyra71215.2;Parent=Phyra71215;constitutive=1;rank=2 scaffold_8 ensembl protein_coding_gene 498665 499720 . - . ID=Phyra71216;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000022;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 498665 499720 . - . ID=Phyra71216;Parent=Phyra71216;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 498665 499720 . - 0 ID=Phyra71216;Parent=Phyra71216;rank=1 scaffold_8 . exon 498665 499720 . - . ID=Phyra71216.1;Parent=Phyra71216;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 495563 495970 . - . ID=Phyra74524;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000125;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 495563 495970 . - . ID=Phyra74524;Parent=Phyra74524;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 495563 495970 . - 0 ID=Phyra74524;Parent=Phyra74524;rank=1 scaffold_8 . exon 495563 495970 . - . ID=Phyra74524.1;Parent=Phyra74524;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 496544 497715 . - . ID=Phyra74525;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000126;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 496544 497715 . - . ID=Phyra74525;Parent=Phyra74525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 496544 496723 . - 0 ID=Phyra74525;Parent=Phyra74525;rank=4 scaffold_8 . exon 496544 496723 . - . ID=Phyra74525.4;Parent=Phyra74525;constitutive=1;rank=4 scaffold_8 . CDS 496795 496905 . - 0 ID=Phyra74525;Parent=Phyra74525;rank=3 scaffold_8 . exon 496795 496905 . - . ID=Phyra74525.3;Parent=Phyra74525;constitutive=1;rank=3 scaffold_8 . CDS 496974 497057 . - 0 ID=Phyra74525;Parent=Phyra74525;rank=2 scaffold_8 . exon 496974 497057 . - . ID=Phyra74525.2;Parent=Phyra74525;constitutive=1;rank=2 scaffold_8 . CDS 497122 497715 . - 0 ID=Phyra74525;Parent=Phyra74525;rank=1 scaffold_8 . exon 497122 497715 . - . ID=Phyra74525.1;Parent=Phyra74525;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 502580 503114 . + . ID=Phyra74530;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000131;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 502580 503114 . + . ID=Phyra74530;Parent=Phyra74530;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 502580 502656 . + 0 ID=Phyra74530;Parent=Phyra74530;rank=1 scaffold_8 . exon 502580 502656 . + . ID=Phyra74530.1;Parent=Phyra74530;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 502727 503114 . + 0 ID=Phyra74530;Parent=Phyra74530;rank=2 scaffold_8 . exon 502727 503114 . + . ID=Phyra74530.2;Parent=Phyra74530;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 ensembl protein_coding_gene 503290 505677 . - . ID=Phyra74531;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000132;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 503290 505677 . - . ID=Phyra74531;Parent=Phyra74531;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 503290 505677 . - 0 ID=Phyra74531;Parent=Phyra74531;rank=1 scaffold_8 . exon 503290 505677 . - . ID=Phyra74531.1;Parent=Phyra74531;constitutive=1;rank=1 scaffold_8 . biological_region 504871 504874 0.999 - . logic_name=eponine scaffold_8 . biological_region 505445 505449 0.999 + . logic_name=eponine scaffold_8 . repeat_region 506066 506074 . ? . description=dust scaffold_8 . biological_region 507871 507873 0.999 + . logic_name=eponine scaffold_8 . biological_region 508015 508016 0.999 - . logic_name=eponine scaffold_8 . biological_region 508107 508112 0.999 + . logic_name=eponine scaffold_8 . biological_region 509369 509370 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 506195 507316 . - . ID=Phyra74532;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000133;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 506195 507316 . - . ID=Phyra74532;Parent=Phyra74532;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 506195 507316 . - 0 ID=Phyra74532;Parent=Phyra74532;rank=1 scaffold_8 . exon 506195 507316 . - . ID=Phyra74532.1;Parent=Phyra74532;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 507811 510663 . + . ID=Phyra74533;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000134;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 507811 510663 . + . ID=Phyra74533;Parent=Phyra74533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 507811 510663 . + 0 ID=Phyra74533;Parent=Phyra74533;rank=1 scaffold_8 . exon 507811 510663 . + . ID=Phyra74533.1;Parent=Phyra74533;constitutive=1;rank=1 scaffold_8 . repeat_region 521719 521766 . ? . description=trf scaffold_8 . repeat_region 523342 523389 . ? . description=trf scaffold_8 ensembl protein_coding_gene 515810 518197 . + . ID=Phyra74534;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000135;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 515810 518197 . + . ID=Phyra74534;Parent=Phyra74534;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 515810 518197 . + 0 ID=Phyra74534;Parent=Phyra74534;rank=1 scaffold_8 . exon 515810 518197 . + . ID=Phyra74534.1;Parent=Phyra74534;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 518967 520028 . + . ID=Phyra74535;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000136;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 518967 520028 . + . ID=Phyra74535;Parent=Phyra74535;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 518967 520028 . + 0 ID=Phyra74535;Parent=Phyra74535;rank=1 scaffold_8 . exon 518967 520028 . + . ID=Phyra74535.1;Parent=Phyra74535;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 520179 520682 . - . ID=Phyra74536;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000137;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 520179 520682 . - . ID=Phyra74536;Parent=Phyra74536;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 520179 520682 . - 0 ID=Phyra74536;Parent=Phyra74536;rank=1 scaffold_8 . exon 520179 520682 . - . ID=Phyra74536.1;Parent=Phyra74536;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 521205 521711 . - . ID=Phyra74537;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000138;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 521205 521711 . - . ID=Phyra74537;Parent=Phyra74537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 521205 521711 . - 0 ID=Phyra74537;Parent=Phyra74537;rank=1 scaffold_8 . exon 521205 521711 . - . ID=Phyra74537.1;Parent=Phyra74537;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 523397 523903 . + . ID=Phyra74538;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000139;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 523397 523903 . + . ID=Phyra74538;Parent=Phyra74538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 523397 523903 . + 0 ID=Phyra74538;Parent=Phyra74538;rank=1 scaffold_8 . exon 523397 523903 . + . ID=Phyra74538.1;Parent=Phyra74538;constitutive=1;rank=1 scaffold_8 . biological_region 526352 526353 0.999 + . logic_name=eponine scaffold_8 . biological_region 527351 527357 0.999 + . logic_name=eponine scaffold_8 . biological_region 528302 528306 0.999 - . logic_name=eponine scaffold_8 . biological_region 531930 531931 0.999 - . logic_name=eponine scaffold_8 . biological_region 532666 532668 0.999 + . logic_name=eponine scaffold_8 . biological_region 533507 533512 0.999 - . logic_name=eponine scaffold_8 . biological_region 533585 533592 0.999 - . logic_name=eponine scaffold_8 . biological_region 533670 533674 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 531475 532387 . - . ID=Phyra53287;biotype=protein_coding;external_name=gwEuk.8.86.1;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 531475 532387 . - . ID=Phyra53287;Parent=Phyra53287;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 531475 531561 . - 0 ID=Phyra53287;Parent=Phyra53287;rank=2 scaffold_8 . exon 531475 531561 . - . ID=Phyra53287.2;Parent=Phyra53287;constitutive=1;rank=2 scaffold_8 . CDS 531635 532387 . - 0 ID=Phyra53287;Parent=Phyra53287;rank=1 scaffold_8 . exon 531635 532387 . - . ID=Phyra53287.1;Parent=Phyra53287;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 524970 525467 . + . ID=Phyra74539;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000140;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 524970 525467 . + . ID=Phyra74539;Parent=Phyra74539;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 524970 525467 . + 0 ID=Phyra74539;Parent=Phyra74539;rank=1 scaffold_8 . exon 524970 525467 . + . ID=Phyra74539.1;Parent=Phyra74539;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 526169 526648 . + . ID=Phyra74540;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000141;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 526169 526648 . + . ID=Phyra74540;Parent=Phyra74540;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 526169 526648 . + 0 ID=Phyra74540;Parent=Phyra74540;rank=1 scaffold_8 . exon 526169 526648 . + . ID=Phyra74540.1;Parent=Phyra74540;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 526713 530960 . - . ID=Phyra74541;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000142;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 526713 530960 . - . ID=Phyra74541;Parent=Phyra74541;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 526713 530960 . - 0 ID=Phyra74541;Parent=Phyra74541;rank=1 scaffold_8 . exon 526713 530960 . - . ID=Phyra74541.1;Parent=Phyra74541;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 532607 533668 . + . ID=Phyra74543;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000144;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 532607 533668 . + . ID=Phyra74543;Parent=Phyra74543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 532607 532910 . + 0 ID=Phyra74543;Parent=Phyra74543;rank=1 scaffold_8 . exon 532607 532910 . + . ID=Phyra74543.1;Parent=Phyra74543;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 533193 533306 . + 0 ID=Phyra74543;Parent=Phyra74543;rank=2 scaffold_8 . exon 533193 533306 . + . ID=Phyra74543.2;Parent=Phyra74543;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 533382 533668 . + 0 ID=Phyra74543;Parent=Phyra74543;rank=3 scaffold_8 . exon 533382 533668 . + . ID=Phyra74543.3;Parent=Phyra74543;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 ensembl protein_coding_gene 534113 536131 . - . ID=Phyra74544;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000145;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 534113 536131 . - . ID=Phyra74544;Parent=Phyra74544;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 534113 535491 . - 0 ID=Phyra74544;Parent=Phyra74544;rank=3 scaffold_8 . exon 534113 535491 . - . ID=Phyra74544.3;Parent=Phyra74544;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 535572 535748 . - 0 ID=Phyra74544;Parent=Phyra74544;rank=2 scaffold_8 . CDS 535855 536131 . - 0 ID=Phyra74544;Parent=Phyra74544;rank=1 scaffold_8 . repeat_region 535760 535792 . ? . description=trf scaffold_8 . repeat_region 537060 537068 . ? . description=dust scaffold_8 . repeat_region 542185 542303 . ? . description=trf scaffold_8 . exon 535572 535748 . - . ID=Phyra74544.2;Parent=Phyra74544;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_8 . exon 535855 536131 . - . ID=Phyra74544.1;Parent=Phyra74544;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 537133 540967 . + . ID=Phyra74545;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000146;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 537133 540967 . + . ID=Phyra74545;Parent=Phyra74545;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 537133 537290 . + 0 ID=Phyra74545;Parent=Phyra74545;rank=1 scaffold_8 . exon 537133 537290 . + . ID=Phyra74545.1;Parent=Phyra74545;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 537368 537512 . + 0 ID=Phyra74545;Parent=Phyra74545;rank=2 scaffold_8 . exon 537368 537512 . + . ID=Phyra74545.2;Parent=Phyra74545;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 537578 539821 . + 0 ID=Phyra74545;Parent=Phyra74545;rank=3 scaffold_8 . exon 537578 539821 . + . ID=Phyra74545.3;Parent=Phyra74545;constitutive=1;rank=3 scaffold_8 . CDS 539891 539989 . + 0 ID=Phyra74545;Parent=Phyra74545;rank=4 scaffold_8 . exon 539891 539989 . + . ID=Phyra74545.4;Parent=Phyra74545;constitutive=1;rank=4 scaffold_8 . CDS 540206 540390 . + 0 ID=Phyra74545;Parent=Phyra74545;rank=5 scaffold_8 . exon 540206 540390 . + . ID=Phyra74545.5;Parent=Phyra74545;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_8 . CDS 540463 540691 . + 0 ID=Phyra74545;Parent=Phyra74545;rank=6 scaffold_8 . exon 540463 540691 . + . ID=Phyra74545.6;Parent=Phyra74545;constitutive=1;ensembl_phase=2;rank=6 scaffold_8 . CDS 540809 540967 . + 0 ID=Phyra74545;Parent=Phyra74545;rank=7 scaffold_8 . exon 540809 540967 . + . ID=Phyra74545.7;Parent=Phyra74545;constitutive=1;rank=7 scaffold_8 ensembl protein_coding_gene 541264 541637 . - . ID=Phyra74546;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000147;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 541264 541637 . - . ID=Phyra74546;Parent=Phyra74546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 541264 541503 . - 0 ID=Phyra74546;Parent=Phyra74546;rank=2 scaffold_8 . exon 541264 541503 . - . ID=Phyra74546.2;Parent=Phyra74546;constitutive=1;rank=2 scaffold_8 . CDS 541563 541637 . - 0 ID=Phyra74546;Parent=Phyra74546;rank=1 scaffold_8 . exon 541563 541637 . - . ID=Phyra74546.1;Parent=Phyra74546;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 541822 543690 . - . ID=Phyra74547;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000148;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 541822 543690 . - . ID=Phyra74547;Parent=Phyra74547;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 541822 542831 . - 0 ID=Phyra74547;Parent=Phyra74547;rank=4 scaffold_8 . exon 541822 542831 . - . ID=Phyra74547.4;Parent=Phyra74547;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 542915 543027 . - 0 ID=Phyra74547;Parent=Phyra74547;rank=3 scaffold_8 . exon 542915 543027 . - . ID=Phyra74547.3;Parent=Phyra74547;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 543100 543191 . - 0 ID=Phyra74547;Parent=Phyra74547;rank=2 scaffold_8 . exon 543100 543191 . - . ID=Phyra74547.2;Parent=Phyra74547;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 543259 543690 . - 0 ID=Phyra74547;Parent=Phyra74547;rank=1 scaffold_8 . exon 543259 543690 . - . ID=Phyra74547.1;Parent=Phyra74547;constitutive=1;rank=1 scaffold_8 . biological_region 545377 545381 0.999 + . logic_name=eponine scaffold_8 . biological_region 545424 545432 0.999 + . logic_name=eponine scaffold_8 . biological_region 545444 545445 0.999 - . logic_name=eponine scaffold_8 . biological_region 545463 545465 0.999 - . logic_name=eponine scaffold_8 . biological_region 545478 545482 0.999 + . logic_name=eponine scaffold_8 . biological_region 545499 545504 0.999 - . logic_name=eponine scaffold_8 . biological_region 545709 545710 0.999 + . logic_name=eponine scaffold_8 . biological_region 546316 546317 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 545628 546344 . + . ID=Phyra74548;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000149;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 545628 546344 . + . ID=Phyra74548;Parent=Phyra74548;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 545628 546344 . + 0 ID=Phyra74548;Parent=Phyra74548;rank=1 scaffold_8 . exon 545628 546344 . + . ID=Phyra74548.1;Parent=Phyra74548;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 546585 549214 . + . ID=Phyra74549;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000150;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 546585 549214 . + . ID=Phyra74549;Parent=Phyra74549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 546585 547763 . + 0 ID=Phyra74549;Parent=Phyra74549;rank=1 scaffold_8 . exon 546585 547763 . + . ID=Phyra74549.1;Parent=Phyra74549;constitutive=1;rank=1 scaffold_8 . CDS 547925 549214 . + 0 ID=Phyra74549;Parent=Phyra74549;rank=2 scaffold_8 . exon 547925 549214 . + . ID=Phyra74549.2;Parent=Phyra74549;constitutive=1;rank=2 scaffold_8 ensembl protein_coding_gene 553421 553888 . + . ID=Phyra74550;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000151;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 553421 553888 . + . ID=Phyra74550;Parent=Phyra74550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 553421 553888 . + 0 ID=Phyra74550;Parent=Phyra74550;rank=1 scaffold_8 . exon 553421 553888 . + . ID=Phyra74550.1;Parent=Phyra74550;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 553994 554920 . - . ID=Phyra74551;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000152;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 553994 554920 . - . ID=Phyra74551;Parent=Phyra74551;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 553994 554920 . - 0 ID=Phyra74551;Parent=Phyra74551;rank=1 scaffold_8 . exon 553994 554920 . - . ID=Phyra74551.1;Parent=Phyra74551;constitutive=1;rank=1 scaffold_8 . repeat_region 556473 556509 . ? . description=trf scaffold_8 ensembl protein_coding_gene 555197 556441 . - . ID=Phyra74552;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000153;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 555197 556441 . - . ID=Phyra74552;Parent=Phyra74552;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 555197 555746 . - 0 ID=Phyra74552;Parent=Phyra74552;rank=5 scaffold_8 . exon 555197 555746 . - . ID=Phyra74552.5;Parent=Phyra74552;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 555809 555891 . - 0 ID=Phyra74552;Parent=Phyra74552;rank=4 scaffold_8 . exon 555809 555891 . - . ID=Phyra74552.4;Parent=Phyra74552;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_8 . CDS 555953 556082 . - 0 ID=Phyra74552;Parent=Phyra74552;rank=3 scaffold_8 . exon 555953 556082 . - . ID=Phyra74552.3;Parent=Phyra74552;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 556164 556204 . - 0 ID=Phyra74552;Parent=Phyra74552;rank=2 scaffold_8 . exon 556164 556204 . - . ID=Phyra74552.2;Parent=Phyra74552;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 556286 556441 . - 0 ID=Phyra74552;Parent=Phyra74552;rank=1 scaffold_8 . exon 556286 556441 . - . ID=Phyra74552.1;Parent=Phyra74552;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 556532 558003 . + . ID=Phyra74553;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000154;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 556532 558003 . + . ID=Phyra74553;Parent=Phyra74553;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 556532 557938 . + 0 ID=Phyra74553;Parent=Phyra74553;rank=1 scaffold_8 . exon 556532 557938 . + . ID=Phyra74553.1;Parent=Phyra74553;constitutive=1;rank=1 scaffold_8 . CDS 557986 558003 . + 0 ID=Phyra74553;Parent=Phyra74553;rank=2 scaffold_8 . exon 557986 558003 . + . ID=Phyra74553.2;Parent=Phyra74553;constitutive=1;rank=2 scaffold_8 ensembl protein_coding_gene 558994 563436 . - . ID=Phyra74554;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000155;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 558994 563436 . - . ID=Phyra74554;Parent=Phyra74554;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 558994 563436 . - 0 ID=Phyra74554;Parent=Phyra74554;rank=1 scaffold_8 . exon 558994 563436 . - . ID=Phyra74554.1;Parent=Phyra74554;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 563754 564260 . - . ID=Phyra74555;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000156;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 563754 564260 . - . ID=Phyra74555;Parent=Phyra74555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 563754 564013 . - 0 ID=Phyra74555;Parent=Phyra74555;rank=2 scaffold_8 . exon 563754 564013 . - . ID=Phyra74555.2;Parent=Phyra74555;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 564086 564260 . - 0 ID=Phyra74555;Parent=Phyra74555;rank=1 scaffold_8 . repeat_region 564758 564765 . ? . description=dust scaffold_8 . repeat_region 566246 566253 . ? . description=dust scaffold_8 . repeat_region 569184 569191 . ? . description=dust scaffold_8 ensembl protein_coding_gene 572711 573337 . + . ID=Phyra71219;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000025;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 572711 573337 . + . ID=Phyra71219;Parent=Phyra71219;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 572711 573337 . + 0 ID=Phyra71219;Parent=Phyra71219;rank=1 scaffold_8 . exon 572711 573337 . + . ID=Phyra71219.1;Parent=Phyra71219;constitutive=1;rank=1 scaffold_8 . exon 564086 564260 . - . ID=Phyra74555.1;Parent=Phyra74555;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 566751 567475 . + . ID=Phyra74556;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000157;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 566751 567475 . + . ID=Phyra74556;Parent=Phyra74556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 566751 567252 . + 0 ID=Phyra74556;Parent=Phyra74556;rank=1 scaffold_8 . exon 566751 567252 . + . ID=Phyra74556.1;Parent=Phyra74556;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 567276 567475 . + 0 ID=Phyra74556;Parent=Phyra74556;rank=2 scaffold_8 . exon 567276 567475 . + . ID=Phyra74556.2;Parent=Phyra74556;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 ensembl protein_coding_gene 570644 572555 . + . ID=Phyra74557;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000158;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 570644 572555 . + . ID=Phyra74557;Parent=Phyra74557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 570644 570721 . + 0 ID=Phyra74557;Parent=Phyra74557;rank=1 scaffold_8 . exon 570644 570721 . + . ID=Phyra74557.1;Parent=Phyra74557;constitutive=1;rank=1 scaffold_8 . CDS 570785 570946 . + 0 ID=Phyra74557;Parent=Phyra74557;rank=2 scaffold_8 . exon 570785 570946 . + . ID=Phyra74557.2;Parent=Phyra74557;constitutive=1;rank=2 scaffold_8 . CDS 571018 571150 . + 0 ID=Phyra74557;Parent=Phyra74557;rank=3 scaffold_8 . exon 571018 571150 . + . ID=Phyra74557.3;Parent=Phyra74557;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . CDS 571213 571325 . + 0 ID=Phyra74557;Parent=Phyra74557;rank=4 scaffold_8 . exon 571213 571325 . + . ID=Phyra74557.4;Parent=Phyra74557;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 571395 572102 . + 0 ID=Phyra74557;Parent=Phyra74557;rank=5 scaffold_8 . exon 571395 572102 . + . ID=Phyra74557.5;Parent=Phyra74557;constitutive=1;rank=5 scaffold_8 . CDS 572166 572555 . + 0 ID=Phyra74557;Parent=Phyra74557;rank=6 scaffold_8 . exon 572166 572555 . + . ID=Phyra74557.6;Parent=Phyra74557;constitutive=1;rank=6 scaffold_8 ensembl protein_coding_gene 573672 579824 . + . ID=Phyra74559;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000160;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 573672 579824 . + . ID=Phyra74559;Parent=Phyra74559;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 573672 579824 . + 0 ID=Phyra74559;Parent=Phyra74559;rank=1 scaffold_8 . exon 573672 579824 . + . ID=Phyra74559.1;Parent=Phyra74559;constitutive=1;rank=1 scaffold_8 . biological_region 578310 578311 0.999 + . logic_name=eponine scaffold_8 . repeat_region 579651 579670 . ? . description=trf scaffold_8 . repeat_region 581656 581675 . ? . description=trf scaffold_8 ensembl protein_coding_gene 582753 584318 . - . ID=Phyra74560;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000161;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 582753 584318 . - . ID=Phyra74560;Parent=Phyra74560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 582753 584318 . - 0 ID=Phyra74560;Parent=Phyra74560;rank=1 scaffold_8 . exon 582753 584318 . - . ID=Phyra74560.1;Parent=Phyra74560;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 586283 587288 . - . ID=Phyra74561;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000162;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 586283 587288 . - . ID=Phyra74561;Parent=Phyra74561;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 586283 587092 . - 0 ID=Phyra74561;Parent=Phyra74561;rank=2 scaffold_8 . exon 586283 587092 . - . ID=Phyra74561.2;Parent=Phyra74561;constitutive=1;rank=2 scaffold_8 . CDS 587229 587288 . - 0 ID=Phyra74561;Parent=Phyra74561;rank=1 scaffold_8 . exon 587229 587288 . - . ID=Phyra74561.1;Parent=Phyra74561;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 588431 589802 . - . ID=Phyra74562;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000163;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 588431 589802 . - . ID=Phyra74562;Parent=Phyra74562;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 588431 589010 . - 0 ID=Phyra74562;Parent=Phyra74562;rank=2 scaffold_8 . exon 588431 589010 . - . ID=Phyra74562.2;Parent=Phyra74562;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 589075 589802 . - 0 ID=Phyra74562;Parent=Phyra74562;rank=1 scaffold_8 . exon 589075 589802 . - . ID=Phyra74562.1;Parent=Phyra74562;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 590018 592175 . + . ID=Phyra74563;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000164;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 590018 592175 . + . ID=Phyra74563;Parent=Phyra74563;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 590018 590647 . + 0 ID=Phyra74563;Parent=Phyra74563;rank=1 scaffold_8 . exon 590018 590647 . + . ID=Phyra74563.1;Parent=Phyra74563;constitutive=1;rank=1 scaffold_8 . CDS 590702 590855 . + 0 ID=Phyra74563;Parent=Phyra74563;rank=2 scaffold_8 . exon 590702 590855 . + . ID=Phyra74563.2;Parent=Phyra74563;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 590920 591027 . + 0 ID=Phyra74563;Parent=Phyra74563;rank=3 scaffold_8 . exon 590920 591027 . + . ID=Phyra74563.3;Parent=Phyra74563;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 591124 591193 . + 0 ID=Phyra74563;Parent=Phyra74563;rank=4 scaffold_8 . exon 591124 591193 . + . ID=Phyra74563.4;Parent=Phyra74563;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_8 . CDS 591275 591498 . + 0 ID=Phyra74563;Parent=Phyra74563;rank=5 scaffold_8 . exon 591275 591498 . + . ID=Phyra74563.5;Parent=Phyra74563;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 591572 591834 . + 0 ID=Phyra74563;Parent=Phyra74563;rank=6 scaffold_8 . exon 591572 591834 . + . ID=Phyra74563.6;Parent=Phyra74563;constitutive=1;ensembl_phase=1;rank=6 scaffold_8 . CDS 591916 592045 . + 0 ID=Phyra74563;Parent=Phyra74563;rank=7 scaffold_8 . exon 591916 592045 . + . ID=Phyra74563.7;Parent=Phyra74563;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_8 . CDS 592129 592175 . + 0 ID=Phyra74563;Parent=Phyra74563;rank=8 scaffold_8 . exon 592129 592175 . + . ID=Phyra74563.8;Parent=Phyra74563;constitutive=1;ensembl_phase=1;rank=8 scaffold_8 ensembl protein_coding_gene 592790 593784 . - . ID=Phyra74564;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000165;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 592790 593784 . - . ID=Phyra74564;Parent=Phyra74564;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 592790 593272 . - 0 ID=Phyra74564;Parent=Phyra74564;rank=3 scaffold_8 . exon 592790 593272 . - . ID=Phyra74564.3;Parent=Phyra74564;constitutive=1;rank=3 scaffold_8 . CDS 593343 593435 . - 0 ID=Phyra74564;Parent=Phyra74564;rank=2 scaffold_8 . exon 593343 593435 . - . ID=Phyra74564.2;Parent=Phyra74564;constitutive=1;rank=2 scaffold_8 . CDS 593782 593784 . - 0 ID=Phyra74564;Parent=Phyra74564;rank=1 scaffold_8 . repeat_region 595081 595124 . ? . description=dust scaffold_8 . biological_region 598499 598503 0.999 - . logic_name=eponine scaffold_8 . biological_region 600679 600683 0.999 - . logic_name=eponine scaffold_8 . biological_region 600736 600739 0.999 + . logic_name=eponine scaffold_8 . biological_region 601129 601131 0.999 - . logic_name=eponine scaffold_8 . biological_region 601314 601315 0.999 - . logic_name=eponine scaffold_8 . biological_region 601485 601486 0.999 - . logic_name=eponine scaffold_8 . biological_region 602618 602624 0.999 - . logic_name=eponine scaffold_8 . exon 593782 593784 . - . ID=Phyra74564.1;Parent=Phyra74564;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 595283 597012 . + . ID=Phyra74565;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000166;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 595283 597012 . + . ID=Phyra74565;Parent=Phyra74565;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 595283 595311 . + 0 ID=Phyra74565;Parent=Phyra74565;rank=1 scaffold_8 . exon 595283 595311 . + . ID=Phyra74565.1;Parent=Phyra74565;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 595385 596759 . + 0 ID=Phyra74565;Parent=Phyra74565;rank=2 scaffold_8 . exon 595385 596759 . + . ID=Phyra74565.2;Parent=Phyra74565;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 596830 597012 . + 0 ID=Phyra74565;Parent=Phyra74565;rank=3 scaffold_8 . exon 596830 597012 . + . ID=Phyra74565.3;Parent=Phyra74565;constitutive=1;rank=3 scaffold_8 ensembl protein_coding_gene 597287 599865 . - . ID=Phyra74566;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000167;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 597287 599865 . - . ID=Phyra74566;Parent=Phyra74566;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 597287 597297 . - 0 ID=Phyra74566;Parent=Phyra74566;rank=4 scaffold_8 . exon 597287 597297 . - . ID=Phyra74566.4;Parent=Phyra74566;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 597318 598502 . - 0 ID=Phyra74566;Parent=Phyra74566;rank=3 scaffold_8 . exon 597318 598502 . - . ID=Phyra74566.3;Parent=Phyra74566;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 598880 599078 . - 0 ID=Phyra74566;Parent=Phyra74566;rank=2 scaffold_8 . exon 598880 599078 . - . ID=Phyra74566.2;Parent=Phyra74566;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 599245 599865 . - 0 ID=Phyra74566;Parent=Phyra74566;rank=1 scaffold_8 . exon 599245 599865 . - . ID=Phyra74566.1;Parent=Phyra74566;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 600221 602650 . + . ID=Phyra74567;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000168;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 600221 602650 . + . ID=Phyra74567;Parent=Phyra74567;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 600221 602650 . + 0 ID=Phyra74567;Parent=Phyra74567;rank=1 scaffold_8 . exon 600221 602650 . + . ID=Phyra74567.1;Parent=Phyra74567;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 606392 610056 . + . ID=Phyra93825;biotype=protein_coding;external_name=C_scaffold_8000021;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 606392 610056 . + . ID=Phyra93825;Parent=Phyra93825;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 606392 606756 . + 0 ID=Phyra93825;Parent=Phyra93825;rank=1 scaffold_8 . exon 606392 606756 . + . ID=Phyra93825.1;Parent=Phyra93825;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 606820 607513 . + 0 ID=Phyra93825;Parent=Phyra93825;rank=2 scaffold_8 . exon 606820 607513 . + . ID=Phyra93825.2;Parent=Phyra93825;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 608060 608215 . + 0 ID=Phyra93825;Parent=Phyra93825;rank=3 scaffold_8 . exon 608060 608215 . + . ID=Phyra93825.3;Parent=Phyra93825;constitutive=1;rank=3 scaffold_8 . CDS 608280 608299 . + 0 ID=Phyra93825;Parent=Phyra93825;rank=4 scaffold_8 . exon 608280 608299 . + . ID=Phyra93825.4;Parent=Phyra93825;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_8 . CDS 608419 608569 . + 0 ID=Phyra93825;Parent=Phyra93825;rank=5 scaffold_8 . exon 608419 608569 . + . ID=Phyra93825.5;Parent=Phyra93825;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 608900 609805 . + 0 ID=Phyra93825;Parent=Phyra93825;rank=6 scaffold_8 . exon 608900 609805 . + . ID=Phyra93825.6;Parent=Phyra93825;constitutive=1;rank=6 scaffold_8 . CDS 609870 609929 . + 0 ID=Phyra93825;Parent=Phyra93825;rank=7 scaffold_8 . exon 609870 609929 . + . ID=Phyra93825.7;Parent=Phyra93825;constitutive=1;rank=7 scaffold_8 . CDS 610009 610056 . + 0 ID=Phyra93825;Parent=Phyra93825;rank=8 scaffold_8 . exon 610009 610056 . + . ID=Phyra93825.8;Parent=Phyra93825;constitutive=1;rank=8 scaffold_8 . repeat_region 618708 618715 . ? . description=dust scaffold_8 . biological_region 619121 619126 0.999 + . logic_name=eponine scaffold_8 . biological_region 619636 619638 0.999 + . logic_name=eponine scaffold_8 . biological_region 620519 620523 0.999 - . logic_name=eponine scaffold_8 . biological_region 620554 620557 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 619606 622795 . + . ID=Phyra53326;biotype=protein_coding;external_name=gwEuk.8.125.1;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 619606 622795 . + . ID=Phyra53326;Parent=Phyra53326;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 619606 622631 . + 0 ID=Phyra53326;Parent=Phyra53326;rank=1 scaffold_8 . exon 619606 622631 . + . ID=Phyra53326.1;Parent=Phyra53326;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 622708 622795 . + 0 ID=Phyra53326;Parent=Phyra53326;rank=2 scaffold_8 . exon 622708 622795 . + . ID=Phyra53326.2;Parent=Phyra53326;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 ensembl protein_coding_gene 623333 624721 . - . ID=Phyra71221;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_8000027;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 623333 624721 . - . ID=Phyra71221;Parent=Phyra71221;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 623333 624721 . - 0 ID=Phyra71221;Parent=Phyra71221;rank=1 scaffold_8 . exon 623333 624721 . - . ID=Phyra71221.1;Parent=Phyra71221;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 615247 619091 . - . ID=Phyra93826;biotype=protein_coding;external_name=C_scaffold_8000022;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 615247 619091 . - . ID=Phyra93826;Parent=Phyra93826;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 615247 615340 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=19 scaffold_8 . exon 615247 615340 . - . ID=Phyra93826.19;Parent=Phyra93826;constitutive=1;ensembl_phase=2;rank=19 scaffold_8 . CDS 615409 615569 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=18 scaffold_8 . exon 615409 615569 . - . ID=Phyra93826.18;Parent=Phyra93826;constitutive=1;ensembl_end_phase=2;rank=18 scaffold_8 . CDS 615651 615815 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=17 scaffold_8 . exon 615651 615815 . - . ID=Phyra93826.17;Parent=Phyra93826;constitutive=1;rank=17 scaffold_8 . CDS 615893 616000 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=16 scaffold_8 . exon 615893 616000 . - . ID=Phyra93826.16;Parent=Phyra93826;constitutive=1;rank=16 scaffold_8 . CDS 616060 616161 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=15 scaffold_8 . exon 616060 616161 . - . ID=Phyra93826.15;Parent=Phyra93826;constitutive=1;rank=15 scaffold_8 . CDS 616232 616416 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=14 scaffold_8 . exon 616232 616416 . - . ID=Phyra93826.14;Parent=Phyra93826;constitutive=1;ensembl_phase=1;rank=14 scaffold_8 . CDS 616618 616750 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=13 scaffold_8 . exon 616618 616750 . - . ID=Phyra93826.13;Parent=Phyra93826;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_8 . CDS 616828 617034 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=12 scaffold_8 . exon 616828 617034 . - . ID=Phyra93826.12;Parent=Phyra93826;constitutive=1;rank=12 scaffold_8 . CDS 617099 617171 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=11 scaffold_8 . exon 617099 617171 . - . ID=Phyra93826.11;Parent=Phyra93826;constitutive=1;ensembl_phase=2;rank=11 scaffold_8 . CDS 617254 617354 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=10 scaffold_8 . exon 617254 617354 . - . ID=Phyra93826.10;Parent=Phyra93826;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_8 . CDS 617424 617592 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=9 scaffold_8 . exon 617424 617592 . - . ID=Phyra93826.9;Parent=Phyra93826;constitutive=1;ensembl_phase=2;rank=9 scaffold_8 . CDS 617665 617708 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=8 scaffold_8 . exon 617665 617708 . - . ID=Phyra93826.8;Parent=Phyra93826;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_8 . CDS 617942 618042 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=7 scaffold_8 . exon 617942 618042 . - . ID=Phyra93826.7;Parent=Phyra93826;constitutive=1;ensembl_phase=1;rank=7 scaffold_8 . CDS 618117 618281 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=6 scaffold_8 . exon 618117 618281 . - . ID=Phyra93826.6;Parent=Phyra93826;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_8 . CDS 618327 618401 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=5 scaffold_8 . exon 618327 618401 . - . ID=Phyra93826.5;Parent=Phyra93826;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_8 . CDS 618453 618593 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=4 scaffold_8 . exon 618453 618593 . - . ID=Phyra93826.4;Parent=Phyra93826;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 618618 618673 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=3 scaffold_8 . exon 618618 618673 . - . ID=Phyra93826.3;Parent=Phyra93826;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 618746 618882 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=2 scaffold_8 . exon 618746 618882 . - . ID=Phyra93826.2;Parent=Phyra93826;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 618939 619091 . - 0 ID=Phyra93826;Parent=Phyra93826;rank=1 scaffold_8 . exon 618939 619091 . - . ID=Phyra93826.1;Parent=Phyra93826;constitutive=1;rank=1 scaffold_8 . repeat_region 624178 624214 . ? . description=trf scaffold_8 ensembl protein_coding_gene 625065 629051 . + . ID=Phyra74572;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000173;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 625065 629051 . + . ID=Phyra74572;Parent=Phyra74572;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 625065 625111 . + 0 ID=Phyra74572;Parent=Phyra74572;rank=1 scaffold_8 . exon 625065 625111 . + . ID=Phyra74572.1;Parent=Phyra74572;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 625181 627018 . + 0 ID=Phyra74572;Parent=Phyra74572;rank=2 scaffold_8 . exon 625181 627018 . + . ID=Phyra74572.2;Parent=Phyra74572;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 627331 628421 . + 0 ID=Phyra74572;Parent=Phyra74572;rank=3 scaffold_8 . exon 627331 628421 . + . ID=Phyra74572.3;Parent=Phyra74572;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 628461 629051 . + 0 ID=Phyra74572;Parent=Phyra74572;rank=4 scaffold_8 . exon 628461 629051 . + . ID=Phyra74572.4;Parent=Phyra74572;constitutive=1;rank=4 scaffold_8 ensembl protein_coding_gene 629835 630674 . + . ID=Phyra74573;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000174;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 629835 630674 . + . ID=Phyra74573;Parent=Phyra74573;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 629835 630674 . + 0 ID=Phyra74573;Parent=Phyra74573;rank=1 scaffold_8 . exon 629835 630674 . + . ID=Phyra74573.1;Parent=Phyra74573;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 630823 632547 . + . ID=Phyra74574;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000175;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 630823 632547 . + . ID=Phyra74574;Parent=Phyra74574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 630823 632547 . + 0 ID=Phyra74574;Parent=Phyra74574;rank=1 scaffold_8 . exon 630823 632547 . + . ID=Phyra74574.1;Parent=Phyra74574;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 629383 629675 . - . ID=Phyra93828;biotype=protein_coding;external_name=C_scaffold_8000024;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 629383 629675 . - . ID=Phyra93828;Parent=Phyra93828;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 629383 629391 . - 0 ID=Phyra93828;Parent=Phyra93828;rank=3 scaffold_8 . exon 629383 629391 . - . ID=Phyra93828.3;Parent=Phyra93828;constitutive=1;rank=3 scaffold_8 . CDS 629418 629454 . - 0 ID=Phyra93828;Parent=Phyra93828;rank=2 scaffold_8 . exon 629418 629454 . - . ID=Phyra93828.2;Parent=Phyra93828;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 629533 629675 . - 0 ID=Phyra93828;Parent=Phyra93828;rank=1 scaffold_8 . exon 629533 629675 . - . ID=Phyra93828.1;Parent=Phyra93828;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 632647 634708 . - . ID=Phyra93831;biotype=protein_coding;external_name=C_scaffold_8000027;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 632647 634708 . - . ID=Phyra93831;Parent=Phyra93831;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 632647 632797 . - 0 ID=Phyra93831;Parent=Phyra93831;rank=7 scaffold_8 . exon 632647 632797 . - . ID=Phyra93831.7;Parent=Phyra93831;constitutive=1;ensembl_phase=2;rank=7 scaffold_8 . CDS 633194 633396 . - 0 ID=Phyra93831;Parent=Phyra93831;rank=6 scaffold_8 . exon 633194 633396 . - . ID=Phyra93831.6;Parent=Phyra93831;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_8 . CDS 633457 633918 . - 0 ID=Phyra93831;Parent=Phyra93831;rank=5 scaffold_8 . CDS 633979 634260 . - 0 ID=Phyra93831;Parent=Phyra93831;rank=4 scaffold_8 . CDS 634331 634492 . - 0 ID=Phyra93831;Parent=Phyra93831;rank=3 scaffold_8 . CDS 634560 634561 . - 0 ID=Phyra93831;Parent=Phyra93831;rank=2 scaffold_8 . CDS 634633 634708 . - 0 ID=Phyra93831;Parent=Phyra93831;rank=1 scaffold_8 . biological_region 637350 637351 0.999 + . logic_name=eponine scaffold_8 . biological_region 637420 637425 0.999 - . logic_name=eponine scaffold_8 . biological_region 637453 637455 0.999 - . logic_name=eponine scaffold_8 . biological_region 638477 638477 0.999 + . logic_name=eponine scaffold_8 . biological_region 641511 641517 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 637062 640502 . + . ID=Phyra74576;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000177;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 637062 640502 . + . ID=Phyra74576;Parent=Phyra74576;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 637062 640502 . + 0 ID=Phyra74576;Parent=Phyra74576;rank=1 scaffold_8 . exon 637062 640502 . + . ID=Phyra74576.1;Parent=Phyra74576;constitutive=1;rank=1 scaffold_8 . exon 633457 633918 . - . ID=Phyra93831.5;Parent=Phyra93831;constitutive=1;rank=5 scaffold_8 . exon 633979 634260 . - . ID=Phyra93831.4;Parent=Phyra93831;constitutive=1;rank=4 scaffold_8 . exon 634331 634492 . - . ID=Phyra93831.3;Parent=Phyra93831;constitutive=1;rank=3 scaffold_8 . exon 634560 634561 . - . ID=Phyra93831.2;Parent=Phyra93831;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . exon 634633 634708 . - . ID=Phyra93831.1;Parent=Phyra93831;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 640847 642806 . + . ID=Phyra93834;biotype=protein_coding;external_name=C_scaffold_8000030;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 640847 642806 . + . ID=Phyra93834;Parent=Phyra93834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 640847 640904 . + 0 ID=Phyra93834;Parent=Phyra93834;rank=1 scaffold_8 . exon 640847 640904 . + . ID=Phyra93834.1;Parent=Phyra93834;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 640978 641009 . + 0 ID=Phyra93834;Parent=Phyra93834;rank=2 scaffold_8 . exon 640978 641009 . + . ID=Phyra93834.2;Parent=Phyra93834;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 641087 641177 . + 0 ID=Phyra93834;Parent=Phyra93834;rank=3 scaffold_8 . exon 641087 641177 . + . ID=Phyra93834.3;Parent=Phyra93834;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . CDS 641242 641344 . + 0 ID=Phyra93834;Parent=Phyra93834;rank=4 scaffold_8 . exon 641242 641344 . + . ID=Phyra93834.4;Parent=Phyra93834;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_8 . CDS 641415 641568 . + 0 ID=Phyra93834;Parent=Phyra93834;rank=5 scaffold_8 . exon 641415 641568 . + . ID=Phyra93834.5;Parent=Phyra93834;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 641652 641717 . + 0 ID=Phyra93834;Parent=Phyra93834;rank=6 scaffold_8 . exon 641652 641717 . + . ID=Phyra93834.6;Parent=Phyra93834;constitutive=1;rank=6 scaffold_8 . CDS 641784 641885 . + 0 ID=Phyra93834;Parent=Phyra93834;rank=7 scaffold_8 . exon 641784 641885 . + . ID=Phyra93834.7;Parent=Phyra93834;constitutive=1;rank=7 scaffold_8 . CDS 641962 642069 . + 0 ID=Phyra93834;Parent=Phyra93834;rank=8 scaffold_8 . exon 641962 642069 . + . ID=Phyra93834.8;Parent=Phyra93834;constitutive=1;rank=8 scaffold_8 . CDS 642135 642202 . + 0 ID=Phyra93834;Parent=Phyra93834;rank=9 scaffold_8 . exon 642135 642202 . + . ID=Phyra93834.9;Parent=Phyra93834;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_8 . CDS 642295 642439 . + 0 ID=Phyra93834;Parent=Phyra93834;rank=10 scaffold_8 . exon 642295 642439 . + . ID=Phyra93834.10;Parent=Phyra93834;constitutive=1;ensembl_phase=2;rank=10 scaffold_8 . CDS 642507 642581 . + 0 ID=Phyra93834;Parent=Phyra93834;rank=11 scaffold_8 . exon 642507 642581 . + . ID=Phyra93834.11;Parent=Phyra93834;constitutive=1;rank=11 scaffold_8 . CDS 642657 642806 . + 0 ID=Phyra93834;Parent=Phyra93834;rank=12 scaffold_8 . exon 642657 642806 . + . ID=Phyra93834.12;Parent=Phyra93834;constitutive=1;rank=12 scaffold_8 . repeat_region 643496 643740 . ? . description=trf scaffold_8 . repeat_region 651012 677171 . ? . description=dust scaffold_8 ensembl protein_coding_gene 644238 650876 . - . ID=Phyra74578;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000179;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 644238 650876 . - . ID=Phyra74578;Parent=Phyra74578;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 644238 644282 . - 0 ID=Phyra74578;Parent=Phyra74578;rank=3 scaffold_8 . exon 644238 644282 . - . ID=Phyra74578.3;Parent=Phyra74578;constitutive=1;rank=3 scaffold_8 . CDS 644344 650814 . - 0 ID=Phyra74578;Parent=Phyra74578;rank=2 scaffold_8 . exon 644344 650814 . - . ID=Phyra74578.2;Parent=Phyra74578;constitutive=1;rank=2 scaffold_8 . CDS 650853 650876 . - 0 ID=Phyra74578;Parent=Phyra74578;rank=1 scaffold_8 . exon 650853 650876 . - . ID=Phyra74578.1;Parent=Phyra74578;constitutive=1;rank=1 scaffold_8 . repeat_region 651012 677171 . ? . description=dust scaffold_8 . repeat_region 677547 677604 . ? . description=trf scaffold_8 . repeat_region 677547 677604 . ? . description=trf scaffold_8 . repeat_region 677580 677725 . ? . description=trf scaffold_8 . repeat_region 677942 677998 . ? . description=trf scaffold_8 . repeat_region 683028 683037 . ? . description=dust scaffold_8 . repeat_region 684129 684137 . ? . description=dust scaffold_8 . repeat_region 684495 684502 . ? . description=dust scaffold_8 . repeat_region 684530 684540 . ? . description=dust scaffold_8 . repeat_region 685757 685775 . ? . description=dust scaffold_8 . repeat_region 686048 686055 . ? . description=dust scaffold_8 . repeat_region 688010 688662 . ? . description=dust scaffold_8 . biological_region 689568 689573 0.999 - . logic_name=eponine scaffold_8 . repeat_region 691083 691244 . ? . description=dust scaffold_8 . biological_region 691360 691366 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 684624 685547 . + . ID=Phyra74579;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000180;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 684624 685547 . + . ID=Phyra74579;Parent=Phyra74579;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 684624 684890 . + 0 ID=Phyra74579;Parent=Phyra74579;rank=1 scaffold_8 . exon 684624 684890 . + . ID=Phyra74579.1;Parent=Phyra74579;constitutive=1;rank=1 scaffold_8 . CDS 684973 685100 . + 0 ID=Phyra74579;Parent=Phyra74579;rank=2 scaffold_8 . exon 684973 685100 . + . ID=Phyra74579.2;Parent=Phyra74579;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 685168 685436 . + 0 ID=Phyra74579;Parent=Phyra74579;rank=3 scaffold_8 . exon 685168 685436 . + . ID=Phyra74579.3;Parent=Phyra74579;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 685513 685547 . + 0 ID=Phyra74579;Parent=Phyra74579;rank=4 scaffold_8 . exon 685513 685547 . + . ID=Phyra74579.4;Parent=Phyra74579;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . repeat_region 698272 698311 . ? . description=trf scaffold_8 ensembl protein_coding_gene 697935 698392 . + . ID=Phyra53334;biotype=protein_coding;external_name=gwEuk.8.133.1;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 697935 698392 . + . ID=Phyra53334;Parent=Phyra53334;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 697935 698061 . + 0 ID=Phyra53334;Parent=Phyra53334;rank=1 scaffold_8 . exon 697935 698061 . + . ID=Phyra53334.1;Parent=Phyra53334;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 698139 698244 . + 0 ID=Phyra53334;Parent=Phyra53334;rank=2 scaffold_8 . exon 698139 698244 . + . ID=Phyra53334.2;Parent=Phyra53334;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_8 . CDS 698314 698392 . + 0 ID=Phyra53334;Parent=Phyra53334;rank=3 scaffold_8 . exon 698314 698392 . + . ID=Phyra53334.3;Parent=Phyra53334;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 ensembl protein_coding_gene 692934 693425 . + . ID=Phyra74580;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000181;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 692934 693425 . + . ID=Phyra74580;Parent=Phyra74580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 692934 693425 . + 0 ID=Phyra74580;Parent=Phyra74580;rank=1 scaffold_8 . exon 692934 693425 . + . ID=Phyra74580.1;Parent=Phyra74580;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 693584 695361 . - . ID=Phyra74581;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000182;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 693584 695361 . - . ID=Phyra74581;Parent=Phyra74581;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 693584 694300 . - 0 ID=Phyra74581;Parent=Phyra74581;rank=5 scaffold_8 . exon 693584 694300 . - . ID=Phyra74581.5;Parent=Phyra74581;constitutive=1;rank=5 scaffold_8 . CDS 694368 694438 . - 0 ID=Phyra74581;Parent=Phyra74581;rank=4 scaffold_8 . exon 694368 694438 . - . ID=Phyra74581.4;Parent=Phyra74581;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 694650 694745 . - 0 ID=Phyra74581;Parent=Phyra74581;rank=3 scaffold_8 . exon 694650 694745 . - . ID=Phyra74581.3;Parent=Phyra74581;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 694936 695131 . - 0 ID=Phyra74581;Parent=Phyra74581;rank=2 scaffold_8 . exon 694936 695131 . - . ID=Phyra74581.2;Parent=Phyra74581;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 695206 695361 . - 0 ID=Phyra74581;Parent=Phyra74581;rank=1 scaffold_8 . exon 695206 695361 . - . ID=Phyra74581.1;Parent=Phyra74581;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 698566 701969 . - . ID=Phyra74583;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000184;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 698566 701969 . - . ID=Phyra74583;Parent=Phyra74583;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 698566 700170 . - 0 ID=Phyra74583;Parent=Phyra74583;rank=5 scaffold_8 . exon 698566 700170 . - . ID=Phyra74583.5;Parent=Phyra74583;constitutive=1;rank=5 scaffold_8 . CDS 700243 700407 . - 0 ID=Phyra74583;Parent=Phyra74583;rank=4 scaffold_8 . exon 700243 700407 . - . ID=Phyra74583.4;Parent=Phyra74583;constitutive=1;rank=4 scaffold_8 . CDS 700475 700768 . - 0 ID=Phyra74583;Parent=Phyra74583;rank=3 scaffold_8 . exon 700475 700768 . - . ID=Phyra74583.3;Parent=Phyra74583;constitutive=1;rank=3 scaffold_8 . CDS 700842 701294 . - 0 ID=Phyra74583;Parent=Phyra74583;rank=2 scaffold_8 . exon 700842 701294 . - . ID=Phyra74583.2;Parent=Phyra74583;constitutive=1;rank=2 scaffold_8 . CDS 701364 701969 . - 0 ID=Phyra74583;Parent=Phyra74583;rank=1 scaffold_8 . exon 701364 701969 . - . ID=Phyra74583.1;Parent=Phyra74583;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 702144 702484 . + . ID=Phyra93837;biotype=protein_coding;external_name=C_scaffold_8000033;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 702144 702484 . + . ID=Phyra93837;Parent=Phyra93837;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 702144 702326 . + 0 ID=Phyra93837;Parent=Phyra93837;rank=1 scaffold_8 . exon 702144 702326 . + . ID=Phyra93837.1;Parent=Phyra93837;constitutive=1;rank=1 scaffold_8 . CDS 702398 702484 . + 0 ID=Phyra93837;Parent=Phyra93837;rank=2 scaffold_8 . exon 702398 702484 . + . ID=Phyra93837.2;Parent=Phyra93837;constitutive=1;rank=2 scaffold_8 . repeat_region 707856 707867 . ? . description=dust scaffold_8 . repeat_region 708369 708385 . ? . description=dust scaffold_8 ensembl protein_coding_gene 710965 711252 . + . ID=Phyra53344;biotype=protein_coding;external_name=gwEuk.8.143.1;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 710965 711252 . + . ID=Phyra53344;Parent=Phyra53344;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 710965 711078 . + 0 ID=Phyra53344;Parent=Phyra53344;rank=1 scaffold_8 . exon 710965 711078 . + . ID=Phyra53344.1;Parent=Phyra53344;constitutive=1;rank=1 scaffold_8 . CDS 711160 711252 . + 0 ID=Phyra53344;Parent=Phyra53344;rank=2 scaffold_8 . exon 711160 711252 . + . ID=Phyra53344.2;Parent=Phyra53344;constitutive=1;rank=2 scaffold_8 ensembl protein_coding_gene 703154 704154 . + . ID=Phyra74584;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000185;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 703154 704154 . + . ID=Phyra74584;Parent=Phyra74584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 703154 703232 . + 0 ID=Phyra74584;Parent=Phyra74584;rank=1 scaffold_8 . exon 703154 703232 . + . ID=Phyra74584.1;Parent=Phyra74584;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 703311 703410 . + 0 ID=Phyra74584;Parent=Phyra74584;rank=2 scaffold_8 . exon 703311 703410 . + . ID=Phyra74584.2;Parent=Phyra74584;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_8 . CDS 703475 703697 . + 0 ID=Phyra74584;Parent=Phyra74584;rank=3 scaffold_8 . exon 703475 703697 . + . ID=Phyra74584.3;Parent=Phyra74584;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 703765 704154 . + 0 ID=Phyra74584;Parent=Phyra74584;rank=4 scaffold_8 . exon 703765 704154 . + . ID=Phyra74584.4;Parent=Phyra74584;constitutive=1;rank=4 scaffold_8 ensembl protein_coding_gene 709649 710452 . - . ID=Phyra74586;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000187;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 709649 710452 . - . ID=Phyra74586;Parent=Phyra74586;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 709649 709870 . - 0 ID=Phyra74586;Parent=Phyra74586;rank=4 scaffold_8 . exon 709649 709870 . - . ID=Phyra74586.4;Parent=Phyra74586;constitutive=1;rank=4 scaffold_8 . CDS 709941 710019 . - 0 ID=Phyra74586;Parent=Phyra74586;rank=3 scaffold_8 . exon 709941 710019 . - . ID=Phyra74586.3;Parent=Phyra74586;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 710106 710325 . - 0 ID=Phyra74586;Parent=Phyra74586;rank=2 scaffold_8 . exon 710106 710325 . - . ID=Phyra74586.2;Parent=Phyra74586;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_8 . CDS 710386 710452 . - 0 ID=Phyra74586;Parent=Phyra74586;rank=1 scaffold_8 . exon 710386 710452 . - . ID=Phyra74586.1;Parent=Phyra74586;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 708608 709599 . + . ID=Phyra93838;biotype=protein_coding;external_name=C_scaffold_8000034;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 708608 709599 . + . ID=Phyra93838;Parent=Phyra93838;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 708608 708610 . + 0 ID=Phyra93838;Parent=Phyra93838;rank=1 scaffold_8 . exon 708608 708610 . + . ID=Phyra93838.1;Parent=Phyra93838;constitutive=1;rank=1 scaffold_8 . CDS 708679 708749 . + 0 ID=Phyra93838;Parent=Phyra93838;rank=2 scaffold_8 . exon 708679 708749 . + . ID=Phyra93838.2;Parent=Phyra93838;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 708837 708967 . + 0 ID=Phyra93838;Parent=Phyra93838;rank=3 scaffold_8 . exon 708837 708967 . + . ID=Phyra93838.3;Parent=Phyra93838;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 709050 709167 . + 0 ID=Phyra93838;Parent=Phyra93838;rank=4 scaffold_8 . exon 709050 709167 . + . ID=Phyra93838.4;Parent=Phyra93838;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_8 . CDS 709246 709471 . + 0 ID=Phyra93838;Parent=Phyra93838;rank=5 scaffold_8 . exon 709246 709471 . + . ID=Phyra93838.5;Parent=Phyra93838;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 709546 709599 . + 0 ID=Phyra93838;Parent=Phyra93838;rank=6 scaffold_8 . exon 709546 709599 . + . ID=Phyra93838.6;Parent=Phyra93838;constitutive=1;rank=6 scaffold_8 ensembl protein_coding_gene 711369 712195 . + . ID=Phyra93840;biotype=protein_coding;external_name=C_scaffold_8000036;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 711369 712195 . + . ID=Phyra93840;Parent=Phyra93840;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 711369 711666 . + 0 ID=Phyra93840;Parent=Phyra93840;rank=1 scaffold_8 . exon 711369 711666 . + . ID=Phyra93840.1;Parent=Phyra93840;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 711759 711886 . + 0 ID=Phyra93840;Parent=Phyra93840;rank=2 scaffold_8 . exon 711759 711886 . + . ID=Phyra93840.2;Parent=Phyra93840;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 711977 712027 . + 0 ID=Phyra93840;Parent=Phyra93840;rank=3 scaffold_8 . exon 711977 712027 . + . ID=Phyra93840.3;Parent=Phyra93840;constitutive=1;rank=3 scaffold_8 . CDS 712124 712195 . + 0 ID=Phyra93840;Parent=Phyra93840;rank=4 scaffold_8 . exon 712124 712195 . + . ID=Phyra93840.4;Parent=Phyra93840;constitutive=1;rank=4 scaffold_8 ensembl protein_coding_gene 712369 713565 . - . ID=Phyra93841;biotype=protein_coding;external_name=C_scaffold_8000037;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 712369 713565 . - . ID=Phyra93841;Parent=Phyra93841;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 712369 712380 . - 0 ID=Phyra93841;Parent=Phyra93841;rank=7 scaffold_8 . exon 712369 712380 . - . ID=Phyra93841.7;Parent=Phyra93841;constitutive=1;rank=7 scaffold_8 . CDS 712529 712624 . - 0 ID=Phyra93841;Parent=Phyra93841;rank=6 scaffold_8 . CDS 712701 712790 . - 0 ID=Phyra93841;Parent=Phyra93841;rank=5 scaffold_8 . CDS 712878 712934 . - 0 ID=Phyra93841;Parent=Phyra93841;rank=4 scaffold_8 . CDS 712999 713130 . - 0 ID=Phyra93841;Parent=Phyra93841;rank=3 scaffold_8 . CDS 713320 713424 . - 0 ID=Phyra93841;Parent=Phyra93841;rank=2 scaffold_8 . CDS 713497 713565 . - 0 ID=Phyra93841;Parent=Phyra93841;rank=1 scaffold_8 . biological_region 718856 718860 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 716221 716602 . + . ID=Phyra53348;biotype=protein_coding;external_name=gwEuk.8.147.1;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 716221 716602 . + . ID=Phyra53348;Parent=Phyra53348;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 716221 716476 . + 0 ID=Phyra53348;Parent=Phyra53348;rank=1 scaffold_8 . exon 716221 716476 . + . ID=Phyra53348.1;Parent=Phyra53348;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 716550 716602 . + 0 ID=Phyra53348;Parent=Phyra53348;rank=2 scaffold_8 . exon 716550 716602 . + . ID=Phyra53348.2;Parent=Phyra53348;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 ensembl protein_coding_gene 714511 715413 . - . ID=Phyra74589;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000190;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 714511 715413 . - . ID=Phyra74589;Parent=Phyra74589;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 714511 714765 . - 0 ID=Phyra74589;Parent=Phyra74589;rank=5 scaffold_8 . exon 714511 714765 . - . ID=Phyra74589.5;Parent=Phyra74589;constitutive=1;rank=5 scaffold_8 . CDS 714849 714934 . - 0 ID=Phyra74589;Parent=Phyra74589;rank=4 scaffold_8 . exon 714849 714934 . - . ID=Phyra74589.4;Parent=Phyra74589;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 715025 715104 . - 0 ID=Phyra74589;Parent=Phyra74589;rank=3 scaffold_8 . exon 715025 715104 . - . ID=Phyra74589.3;Parent=Phyra74589;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 715173 715263 . - 0 ID=Phyra74589;Parent=Phyra74589;rank=2 scaffold_8 . exon 715173 715263 . - . ID=Phyra74589.2;Parent=Phyra74589;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_8 . CDS 715335 715413 . - 0 ID=Phyra74589;Parent=Phyra74589;rank=1 scaffold_8 . exon 715335 715413 . - . ID=Phyra74589.1;Parent=Phyra74589;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 715529 716192 . + . ID=Phyra74590;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000191;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 715529 716192 . + . ID=Phyra74590;Parent=Phyra74590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 715529 716087 . + 0 ID=Phyra74590;Parent=Phyra74590;rank=1 scaffold_8 . exon 715529 716087 . + . ID=Phyra74590.1;Parent=Phyra74590;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 716182 716192 . + 0 ID=Phyra74590;Parent=Phyra74590;rank=2 scaffold_8 . exon 716182 716192 . + . ID=Phyra74590.2;Parent=Phyra74590;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 ensembl protein_coding_gene 717239 718273 . - . ID=Phyra74591;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000192;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 717239 718273 . - . ID=Phyra74591;Parent=Phyra74591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 717239 718273 . - 0 ID=Phyra74591;Parent=Phyra74591;rank=1 scaffold_8 . exon 717239 718273 . - . ID=Phyra74591.1;Parent=Phyra74591;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 719347 720387 . - . ID=Phyra74592;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000193;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 719347 720387 . - . ID=Phyra74592;Parent=Phyra74592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 719347 720387 . - 0 ID=Phyra74592;Parent=Phyra74592;rank=1 scaffold_8 . exon 719347 720387 . - . ID=Phyra74592.1;Parent=Phyra74592;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 720827 721867 . + . ID=Phyra74593;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000194;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 720827 721867 . + . ID=Phyra74593;Parent=Phyra74593;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 720827 721867 . + 0 ID=Phyra74593;Parent=Phyra74593;rank=1 scaffold_8 . exon 720827 721867 . + . ID=Phyra74593.1;Parent=Phyra74593;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 722145 723057 . + . ID=Phyra74594;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000195;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 722145 723057 . + . ID=Phyra74594;Parent=Phyra74594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 722145 723013 . + 0 ID=Phyra74594;Parent=Phyra74594;rank=1 scaffold_8 . exon 722145 723013 . + . ID=Phyra74594.1;Parent=Phyra74594;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 723042 723057 . + 0 ID=Phyra74594;Parent=Phyra74594;rank=2 scaffold_8 . exon 712529 712624 . - . ID=Phyra93841.6;Parent=Phyra93841;constitutive=1;rank=6 scaffold_8 . exon 712701 712790 . - . ID=Phyra93841.5;Parent=Phyra93841;constitutive=1;rank=5 scaffold_8 . exon 712878 712934 . - . ID=Phyra93841.4;Parent=Phyra93841;constitutive=1;rank=4 scaffold_8 . exon 712999 713130 . - . ID=Phyra93841.3;Parent=Phyra93841;constitutive=1;rank=3 scaffold_8 . exon 713320 713424 . - . ID=Phyra93841.2;Parent=Phyra93841;constitutive=1;rank=2 scaffold_8 . exon 713497 713565 . - . ID=Phyra93841.1;Parent=Phyra93841;constitutive=1;rank=1 scaffold_8 . repeat_region 732055 732104 . ? . description=trf scaffold_8 . exon 723042 723057 . + . ID=Phyra74594.2;Parent=Phyra74594;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 ensembl protein_coding_gene 725665 727110 . - . ID=Phyra74595;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000196;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 725665 727110 . - . ID=Phyra74595;Parent=Phyra74595;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 725665 725856 . - 0 ID=Phyra74595;Parent=Phyra74595;rank=3 scaffold_8 . exon 725665 725856 . - . ID=Phyra74595.3;Parent=Phyra74595;constitutive=1;rank=3 scaffold_8 . CDS 725929 725986 . - 0 ID=Phyra74595;Parent=Phyra74595;rank=2 scaffold_8 . exon 725929 725986 . - . ID=Phyra74595.2;Parent=Phyra74595;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 726014 727110 . - 0 ID=Phyra74595;Parent=Phyra74595;rank=1 scaffold_8 . exon 726014 727110 . - . ID=Phyra74595.1;Parent=Phyra74595;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 727230 728427 . - . ID=Phyra74596;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000197;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 727230 728427 . - . ID=Phyra74596;Parent=Phyra74596;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 727230 728063 . - 0 ID=Phyra74596;Parent=Phyra74596;rank=3 scaffold_8 . exon 727230 728063 . - . ID=Phyra74596.3;Parent=Phyra74596;constitutive=1;rank=3 scaffold_8 . CDS 728130 728260 . - 0 ID=Phyra74596;Parent=Phyra74596;rank=2 scaffold_8 . exon 728130 728260 . - . ID=Phyra74596.2;Parent=Phyra74596;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 728331 728427 . - 0 ID=Phyra74596;Parent=Phyra74596;rank=1 scaffold_8 . exon 728331 728427 . - . ID=Phyra74596.1;Parent=Phyra74596;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 728678 732124 . - . ID=Phyra74597;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_8000198;logic_name=jgi_phyra1 scaffold_8 ensembl transcript 728678 732124 . - . ID=Phyra74597;Parent=Phyra74597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_8 . CDS 728678 732124 . - 0 ID=Phyra74597;Parent=Phyra74597;rank=1 scaffold_8 . exon 728678 732124 . - . ID=Phyra74597.1;Parent=Phyra74597;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_7 1 787762 scaffold_7 . repeat_region 237 246 . ? . description=dust scaffold_7 . repeat_region 9860 9879 . ? . description=trf scaffold_7 ensembl protein_coding_gene 1579 2184 . + . ID=Phyra74230;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000001;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 1579 2184 . + . ID=Phyra74230;Parent=Phyra74230;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 1579 2184 . + 0 ID=Phyra74230;Parent=Phyra74230;rank=1 scaffold_7 . exon 1579 2184 . + . ID=Phyra74230.1;Parent=Phyra74230;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 3407 5029 . - . ID=Phyra74231;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000002;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 3407 5029 . - . ID=Phyra74231;Parent=Phyra74231;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 3407 5029 . - 0 ID=Phyra74231;Parent=Phyra74231;rank=1 scaffold_7 . exon 3407 5029 . - . ID=Phyra74231.1;Parent=Phyra74231;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 8288 10382 . - . ID=Phyra74232;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000003;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 8288 10382 . - . ID=Phyra74232;Parent=Phyra74232;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 8288 8547 . - 0 ID=Phyra74232;Parent=Phyra74232;rank=2 scaffold_7 . exon 8288 8547 . - . ID=Phyra74232.2;Parent=Phyra74232;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 8849 10382 . - 0 ID=Phyra74232;Parent=Phyra74232;rank=1 scaffold_7 . exon 8849 10382 . - . ID=Phyra74232.1;Parent=Phyra74232;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 11982 13706 . - . ID=Phyra74233;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000004;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 11982 13706 . - . ID=Phyra74233;Parent=Phyra74233;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 11982 13706 . - 0 ID=Phyra74233;Parent=Phyra74233;rank=1 scaffold_7 . exon 11982 13706 . - . ID=Phyra74233.1;Parent=Phyra74233;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 15075 15944 . + . ID=Phyra74234;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000005;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 15075 15944 . + . ID=Phyra74234;Parent=Phyra74234;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 15075 15944 . + 0 ID=Phyra74234;Parent=Phyra74234;rank=1 scaffold_7 . exon 15075 15944 . + . ID=Phyra74234.1;Parent=Phyra74234;constitutive=1;rank=1 scaffold_7 . repeat_region 20054 20063 . ? . description=dust scaffold_7 . repeat_region 23164 23183 . ? . description=dust scaffold_7 . repeat_region 25522 25543 . ? . description=dust scaffold_7 . repeat_region 25771 26032 . ? . description=trf scaffold_7 . repeat_region 25781 25985 . ? . description=trf scaffold_7 . biological_region 28153 28159 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 20153 20887 . - . ID=Phyra71182;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_7000001;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 20153 20887 . - . ID=Phyra71182;Parent=Phyra71182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 20153 20467 . - 0 ID=Phyra71182;Parent=Phyra71182;rank=3 scaffold_7 . exon 20153 20467 . - . ID=Phyra71182.3;Parent=Phyra71182;constitutive=1;rank=3 scaffold_7 . CDS 20530 20601 . - 0 ID=Phyra71182;Parent=Phyra71182;rank=2 scaffold_7 . exon 20530 20601 . - . ID=Phyra71182.2;Parent=Phyra71182;constitutive=1;rank=2 scaffold_7 . CDS 20672 20887 . - 0 ID=Phyra71182;Parent=Phyra71182;rank=1 scaffold_7 . exon 20672 20887 . - . ID=Phyra71182.1;Parent=Phyra71182;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 22154 22876 . + . ID=Phyra74236;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000007;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 22154 22876 . + . ID=Phyra74236;Parent=Phyra74236;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 22154 22876 . + 0 ID=Phyra74236;Parent=Phyra74236;rank=1 scaffold_7 . exon 22154 22876 . + . ID=Phyra74236.1;Parent=Phyra74236;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 25556 26284 . + . ID=Phyra74237;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000008;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 25556 26284 . + . ID=Phyra74237;Parent=Phyra74237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 25556 26284 . + 0 ID=Phyra74237;Parent=Phyra74237;rank=1 scaffold_7 . exon 25556 26284 . + . ID=Phyra74237.1;Parent=Phyra74237;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 27343 28518 . + . ID=Phyra74238;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000009;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 27343 28518 . + . ID=Phyra74238;Parent=Phyra74238;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 27343 28518 . + 0 ID=Phyra74238;Parent=Phyra74238;rank=1 scaffold_7 . exon 27343 28518 . + . ID=Phyra74238.1;Parent=Phyra74238;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 28706 32182 . - . ID=Phyra74239;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000010;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 28706 32182 . - . ID=Phyra74239;Parent=Phyra74239;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 28706 32182 . - 0 ID=Phyra74239;Parent=Phyra74239;rank=1 scaffold_7 . exon 28706 32182 . - . ID=Phyra74239.1;Parent=Phyra74239;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 33726 37444 . - . ID=Phyra74240;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000011;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 33726 37444 . - . ID=Phyra74240;Parent=Phyra74240;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 33726 33776 . - 0 ID=Phyra74240;Parent=Phyra74240;rank=6 scaffold_7 . exon 33726 33776 . - . ID=Phyra74240.6;Parent=Phyra74240;constitutive=1;rank=6 scaffold_7 . CDS 33838 34623 . - 0 ID=Phyra74240;Parent=Phyra74240;rank=5 scaffold_7 . exon 33838 34623 . - . ID=Phyra74240.5;Parent=Phyra74240;constitutive=1;rank=5 scaffold_7 . CDS 34813 34875 . - 0 ID=Phyra74240;Parent=Phyra74240;rank=4 scaffold_7 . exon 34813 34875 . - . ID=Phyra74240.4;Parent=Phyra74240;constitutive=1;rank=4 scaffold_7 . CDS 34943 35401 . - 0 ID=Phyra74240;Parent=Phyra74240;rank=3 scaffold_7 . exon 34943 35401 . - . ID=Phyra74240.3;Parent=Phyra74240;constitutive=1;rank=3 scaffold_7 . CDS 35510 35790 . - 0 ID=Phyra74240;Parent=Phyra74240;rank=2 scaffold_7 . exon 35510 35790 . - . ID=Phyra74240.2;Parent=Phyra74240;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 35854 37444 . - 0 ID=Phyra74240;Parent=Phyra74240;rank=1 scaffold_7 . exon 35854 37444 . - . ID=Phyra74240.1;Parent=Phyra74240;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . repeat_region 38464 41873 . ? . description=dust scaffold_7 . biological_region 42630 42633 0.999 - . logic_name=eponine scaffold_7 . biological_region 42736 42739 0.999 - . logic_name=eponine scaffold_7 . repeat_region 43900 43923 . ? . description=trf scaffold_7 . biological_region 44558 44562 0.999 - . logic_name=eponine scaffold_7 . repeat_region 48470 49291 . + . description=Gypsy-2-I_PI-int scaffold_7 . repeat_region 49568 49606 . ? . description=trf scaffold_7 ensembl protein_coding_gene 42465 42908 . + . ID=Phyra74241;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000012;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 42465 42908 . + . ID=Phyra74241;Parent=Phyra74241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 42465 42908 . + 0 ID=Phyra74241;Parent=Phyra74241;rank=1 scaffold_7 . exon 42465 42908 . + . ID=Phyra74241.1;Parent=Phyra74241;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 43776 44156 . + . ID=Phyra74242;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000013;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 43776 44156 . + . ID=Phyra74242;Parent=Phyra74242;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 43776 44156 . + 0 ID=Phyra74242;Parent=Phyra74242;rank=1 scaffold_7 . exon 43776 44156 . + . ID=Phyra74242.1;Parent=Phyra74242;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 44304 45185 . + . ID=Phyra74243;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000014;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 44304 45185 . + . ID=Phyra74243;Parent=Phyra74243;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 44304 44677 . + 0 ID=Phyra74243;Parent=Phyra74243;rank=1 scaffold_7 . exon 44304 44677 . + . ID=Phyra74243.1;Parent=Phyra74243;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 44789 45185 . + 0 ID=Phyra74243;Parent=Phyra74243;rank=2 scaffold_7 . exon 44789 45185 . + . ID=Phyra74243.2;Parent=Phyra74243;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 ensembl protein_coding_gene 45256 48306 . - . ID=Phyra74244;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000015;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 45256 48306 . - . ID=Phyra74244;Parent=Phyra74244;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 45256 48306 . - 0 ID=Phyra74244;Parent=Phyra74244;rank=1 scaffold_7 . exon 45256 48306 . - . ID=Phyra74244.1;Parent=Phyra74244;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 52111 54444 . + . ID=Phyra74245;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000016;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 52111 54444 . + . ID=Phyra74245;Parent=Phyra74245;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 52111 54444 . + 0 ID=Phyra74245;Parent=Phyra74245;rank=1 scaffold_7 . exon 52111 54444 . + . ID=Phyra74245.1;Parent=Phyra74245;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 54602 55978 . - . ID=Phyra74246;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000017;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 54602 55978 . - . ID=Phyra74246;Parent=Phyra74246;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 54602 55978 . - 0 ID=Phyra74246;Parent=Phyra74246;rank=1 scaffold_7 . exon 54602 55978 . - . ID=Phyra74246.1;Parent=Phyra74246;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 57460 59154 . - . ID=Phyra74247;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000018;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 57460 59154 . - . ID=Phyra74247;Parent=Phyra74247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 57460 59154 . - 0 ID=Phyra74247;Parent=Phyra74247;rank=1 scaffold_7 . exon 57460 59154 . - . ID=Phyra74247.1;Parent=Phyra74247;constitutive=1;rank=1 scaffold_7 . repeat_region 65190 65236 . ? . description=dust scaffold_7 . biological_region 67179 67182 0.999 - . logic_name=eponine scaffold_7 . repeat_region 69026 69052 . ? . description=trf scaffold_7 . biological_region 69123 69127 0.999 + . logic_name=eponine scaffold_7 . repeat_region 69624 69684 . ? . description=trf scaffold_7 . biological_region 69781 69788 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 59925 64308 . + . ID=Phyra74248;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000019;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 59925 64308 . + . ID=Phyra74248;Parent=Phyra74248;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 59925 63405 . + 0 ID=Phyra74248;Parent=Phyra74248;rank=1 scaffold_7 . exon 59925 63405 . + . ID=Phyra74248.1;Parent=Phyra74248;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 63496 64211 . + 0 ID=Phyra74248;Parent=Phyra74248;rank=2 scaffold_7 . exon 63496 64211 . + . ID=Phyra74248.2;Parent=Phyra74248;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 64285 64308 . + 0 ID=Phyra74248;Parent=Phyra74248;rank=3 scaffold_7 . exon 64285 64308 . + . ID=Phyra74248.3;Parent=Phyra74248;constitutive=1;rank=3 scaffold_7 ensembl protein_coding_gene 64455 66132 . - . ID=Phyra74249;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000020;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 64455 66132 . - . ID=Phyra74249;Parent=Phyra74249;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 64455 64562 . - 0 ID=Phyra74249;Parent=Phyra74249;rank=4 scaffold_7 . exon 64455 64562 . - . ID=Phyra74249.4;Parent=Phyra74249;constitutive=1;rank=4 scaffold_7 . CDS 64633 64798 . - 0 ID=Phyra74249;Parent=Phyra74249;rank=3 scaffold_7 . exon 64633 64798 . - . ID=Phyra74249.3;Parent=Phyra74249;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 65082 65783 . - 0 ID=Phyra74249;Parent=Phyra74249;rank=2 scaffold_7 . exon 65082 65783 . - . ID=Phyra74249.2;Parent=Phyra74249;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_7 . CDS 65882 66132 . - 0 ID=Phyra74249;Parent=Phyra74249;rank=1 scaffold_7 . exon 65882 66132 . - . ID=Phyra74249.1;Parent=Phyra74249;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 66870 68656 . + . ID=Phyra74250;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000021;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 66870 68656 . + . ID=Phyra74250;Parent=Phyra74250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 66870 68594 . + 0 ID=Phyra74250;Parent=Phyra74250;rank=1 scaffold_7 . exon 66870 68594 . + . ID=Phyra74250.1;Parent=Phyra74250;constitutive=1;rank=1 scaffold_7 . CDS 68645 68656 . + 0 ID=Phyra74250;Parent=Phyra74250;rank=2 scaffold_7 . exon 68645 68656 . + . ID=Phyra74250.2;Parent=Phyra74250;constitutive=1;rank=2 scaffold_7 ensembl protein_coding_gene 68893 69894 . - . ID=Phyra74251;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000022;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 68893 69894 . - . ID=Phyra74251;Parent=Phyra74251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 68893 69894 . - 0 ID=Phyra74251;Parent=Phyra74251;rank=1 scaffold_7 . exon 68893 69894 . - . ID=Phyra74251.1;Parent=Phyra74251;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 72736 74598 . + . ID=Phyra74252;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000023;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 72736 74598 . + . ID=Phyra74252;Parent=Phyra74252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 72736 74598 . + 0 ID=Phyra74252;Parent=Phyra74252;rank=1 scaffold_7 . exon 72736 74598 . + . ID=Phyra74252.1;Parent=Phyra74252;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 75213 77169 . + . ID=Phyra74253;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000024;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 75213 77169 . + . ID=Phyra74253;Parent=Phyra74253;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 75213 75892 . + 0 ID=Phyra74253;Parent=Phyra74253;rank=1 scaffold_7 . exon 75213 75892 . + . ID=Phyra74253.1;Parent=Phyra74253;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 75957 77169 . + 0 ID=Phyra74253;Parent=Phyra74253;rank=2 scaffold_7 . exon 75957 77169 . + . ID=Phyra74253.2;Parent=Phyra74253;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 ensembl protein_coding_gene 77534 79452 . + . ID=Phyra74254;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000025;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 77534 79452 . + . ID=Phyra74254;Parent=Phyra74254;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 77534 78081 . + 0 ID=Phyra74254;Parent=Phyra74254;rank=1 scaffold_7 . exon 77534 78081 . + . ID=Phyra74254.1;Parent=Phyra74254;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 78291 78454 . + 0 ID=Phyra74254;Parent=Phyra74254;rank=2 scaffold_7 . exon 78291 78454 . + . ID=Phyra74254.2;Parent=Phyra74254;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 78575 79452 . + 0 ID=Phyra74254;Parent=Phyra74254;rank=3 scaffold_7 . exon 78575 79452 . + . ID=Phyra74254.3;Parent=Phyra74254;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 ensembl protein_coding_gene 79712 81397 . - . ID=Phyra74255;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000026;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 79712 81397 . - . ID=Phyra74255;Parent=Phyra74255;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 79712 81397 . - 0 ID=Phyra74255;Parent=Phyra74255;rank=1 scaffold_7 . exon 79712 81397 . - . ID=Phyra74255.1;Parent=Phyra74255;constitutive=1;rank=1 scaffold_7 . repeat_region 79754 80260 . ? . description=trf scaffold_7 . repeat_region 80018 80120 . ? . description=trf scaffold_7 . repeat_region 81929 81937 . ? . description=dust scaffold_7 . biological_region 83390 83391 0.999 + . logic_name=eponine scaffold_7 . repeat_region 84445 84497 . ? . description=trf scaffold_7 . repeat_region 84679 84710 . ? . description=trf scaffold_7 . biological_region 85366 85369 0.999 - . logic_name=eponine scaffold_7 . repeat_region 86415 86519 . ? . description=trf scaffold_7 . repeat_region 86415 86534 . ? . description=trf scaffold_7 . biological_region 86852 86857 0.999 + . logic_name=eponine scaffold_7 . biological_region 87006 87007 0.999 - . logic_name=eponine scaffold_7 . biological_region 87367 87367 0.999 + . logic_name=eponine scaffold_7 . biological_region 87707 87708 0.999 + . logic_name=eponine scaffold_7 . biological_region 87964 87966 0.999 + . logic_name=eponine scaffold_7 . biological_region 88090 88093 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 82163 83527 . - . ID=Phyra74256;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000027;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 82163 83527 . - . ID=Phyra74256;Parent=Phyra74256;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 82163 83527 . - 0 ID=Phyra74256;Parent=Phyra74256;rank=1 scaffold_7 . exon 82163 83527 . - . ID=Phyra74256.1;Parent=Phyra74256;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 84351 87500 . - . ID=Phyra74257;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000028;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 84351 87500 . - . ID=Phyra74257;Parent=Phyra74257;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 84351 85793 . - 0 ID=Phyra74257;Parent=Phyra74257;rank=3 scaffold_7 . exon 84351 85793 . - . ID=Phyra74257.3;Parent=Phyra74257;constitutive=1;rank=3 scaffold_7 . CDS 86074 86152 . - 0 ID=Phyra74257;Parent=Phyra74257;rank=2 scaffold_7 . exon 86074 86152 . - . ID=Phyra74257.2;Parent=Phyra74257;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 86269 87500 . - 0 ID=Phyra74257;Parent=Phyra74257;rank=1 scaffold_7 . exon 86269 87500 . - . ID=Phyra74257.1;Parent=Phyra74257;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 95265 96485 . - . ID=Phyra74258;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000029;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 95265 96485 . - . ID=Phyra74258;Parent=Phyra74258;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 95265 95445 . - 0 ID=Phyra74258;Parent=Phyra74258;rank=3 scaffold_7 . exon 95265 95445 . - . ID=Phyra74258.3;Parent=Phyra74258;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 95502 96228 . - 0 ID=Phyra74258;Parent=Phyra74258;rank=2 scaffold_7 . exon 95502 96228 . - . ID=Phyra74258.2;Parent=Phyra74258;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_7 . CDS 96278 96485 . - 0 ID=Phyra74258;Parent=Phyra74258;rank=1 scaffold_7 . exon 96278 96485 . - . ID=Phyra74258.1;Parent=Phyra74258;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . repeat_region 99274 100010 . ? . description=trf scaffold_7 . repeat_region 101488 101540 . ? . description=trf scaffold_7 . repeat_region 101488 101540 . ? . description=trf scaffold_7 . repeat_region 102908 102946 . ? . description=trf scaffold_7 . repeat_region 103887 103904 . ? . description=dust scaffold_7 ensembl protein_coding_gene 101766 103460 . + . ID=Phyra74259;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000030;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 101766 103460 . + . ID=Phyra74259;Parent=Phyra74259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 101766 103460 . + 0 ID=Phyra74259;Parent=Phyra74259;rank=1 scaffold_7 . exon 101766 103460 . + . ID=Phyra74259.1;Parent=Phyra74259;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 107967 109610 . + . ID=Phyra74260;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000031;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 107967 109610 . + . ID=Phyra74260;Parent=Phyra74260;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 107967 109610 . + 0 ID=Phyra74260;Parent=Phyra74260;rank=1 scaffold_7 . exon 107967 109610 . + . ID=Phyra74260.1;Parent=Phyra74260;constitutive=1;rank=1 scaffold_7 . biological_region 109742 109744 0.999 + . logic_name=eponine scaffold_7 . biological_region 112647 112647 0.999 - . logic_name=eponine scaffold_7 . biological_region 114941 114945 0.999 + . logic_name=eponine scaffold_7 . biological_region 114971 114972 0.999 - . logic_name=eponine scaffold_7 . biological_region 115057 115060 0.999 - . logic_name=eponine scaffold_7 . biological_region 115864 115868 0.999 + . logic_name=eponine scaffold_7 . biological_region 115880 115885 0.999 + . logic_name=eponine scaffold_7 . biological_region 115902 115908 0.999 + . logic_name=eponine scaffold_7 . biological_region 115916 115922 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 110836 112758 . - . ID=Phyra74261;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000032;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 110836 112758 . - . ID=Phyra74261;Parent=Phyra74261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 110836 112758 . - 0 ID=Phyra74261;Parent=Phyra74261;rank=1 scaffold_7 . exon 110836 112758 . - . ID=Phyra74261.1;Parent=Phyra74261;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 113739 116000 . - . ID=Phyra74262;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000033;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 113739 116000 . - . ID=Phyra74262;Parent=Phyra74262;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 113739 116000 . - 0 ID=Phyra74262;Parent=Phyra74262;rank=1 scaffold_7 . exon 113739 116000 . - . ID=Phyra74262.1;Parent=Phyra74262;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 116142 117208 . + . ID=Phyra74263;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000034;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 116142 117208 . + . ID=Phyra74263;Parent=Phyra74263;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 116142 116255 . + 0 ID=Phyra74263;Parent=Phyra74263;rank=1 scaffold_7 . exon 116142 116255 . + . ID=Phyra74263.1;Parent=Phyra74263;constitutive=1;rank=1 scaffold_7 . CDS 116317 116713 . + 0 ID=Phyra74263;Parent=Phyra74263;rank=2 scaffold_7 . exon 116317 116713 . + . ID=Phyra74263.2;Parent=Phyra74263;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_7 . CDS 116777 116920 . + 0 ID=Phyra74263;Parent=Phyra74263;rank=3 scaffold_7 . exon 116777 116920 . + . ID=Phyra74263.3;Parent=Phyra74263;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 116994 117208 . + 0 ID=Phyra74263;Parent=Phyra74263;rank=4 scaffold_7 . exon 116994 117208 . + . ID=Phyra74263.4;Parent=Phyra74263;constitutive=1;ensembl_phase=1;rank=4 scaffold_7 ensembl protein_coding_gene 117570 118436 . - . ID=Phyra74264;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000035;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 117570 118436 . - . ID=Phyra74264;Parent=Phyra74264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 117570 118436 . - 0 ID=Phyra74264;Parent=Phyra74264;rank=1 scaffold_7 . exon 117570 118436 . - . ID=Phyra74264.1;Parent=Phyra74264;constitutive=1;rank=1 scaffold_7 . repeat_region 121496 121545 . ? . description=dust scaffold_7 . repeat_region 123510 123524 . ? . description=dust scaffold_7 . repeat_region 123694 123743 . ? . description=dust scaffold_7 . repeat_region 123948 123962 . ? . description=dust scaffold_7 ensembl protein_coding_gene 119690 120556 . + . ID=Phyra74265;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000036;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 119690 120556 . + . ID=Phyra74265;Parent=Phyra74265;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 119690 120556 . + 0 ID=Phyra74265;Parent=Phyra74265;rank=1 scaffold_7 . exon 119690 120556 . + . ID=Phyra74265.1;Parent=Phyra74265;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 121372 122234 . - . ID=Phyra74266;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000037;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 121372 122234 . - . ID=Phyra74266;Parent=Phyra74266;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 121372 121423 . - 0 ID=Phyra74266;Parent=Phyra74266;rank=2 scaffold_7 . exon 121372 121423 . - . ID=Phyra74266.2;Parent=Phyra74266;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 121552 122234 . - 0 ID=Phyra74266;Parent=Phyra74266;rank=1 scaffold_7 . exon 121552 122234 . - . ID=Phyra74266.1;Parent=Phyra74266;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 125238 126125 . + . ID=Phyra74267;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000038;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 125238 126125 . + . ID=Phyra74267;Parent=Phyra74267;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 125238 126125 . + 0 ID=Phyra74267;Parent=Phyra74267;rank=1 scaffold_7 . exon 125238 126125 . + . ID=Phyra74267.1;Parent=Phyra74267;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 129065 131068 . + . ID=Phyra74268;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000039;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 129065 131068 . + . ID=Phyra74268;Parent=Phyra74268;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 129065 131068 . + 0 ID=Phyra74268;Parent=Phyra74268;rank=1 scaffold_7 . exon 129065 131068 . + . ID=Phyra74268.1;Parent=Phyra74268;constitutive=1;rank=1 scaffold_7 . biological_region 131444 131450 0.999 + . logic_name=eponine scaffold_7 . biological_region 131740 131741 0.999 + . logic_name=eponine scaffold_7 . biological_region 137315 137317 0.999 - . logic_name=eponine scaffold_7 . repeat_region 138254 138280 . ? . description=trf scaffold_7 ensembl protein_coding_gene 131243 134284 . - . ID=Phyra74269;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000040;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 131243 134284 . - . ID=Phyra74269;Parent=Phyra74269;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 131243 131675 . - 0 ID=Phyra74269;Parent=Phyra74269;rank=6 scaffold_7 . exon 131243 131675 . - . ID=Phyra74269.6;Parent=Phyra74269;constitutive=1;ensembl_phase=2;rank=6 scaffold_7 . CDS 131880 132062 . - 0 ID=Phyra74269;Parent=Phyra74269;rank=5 scaffold_7 . exon 131880 132062 . - . ID=Phyra74269.5;Parent=Phyra74269;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_7 . CDS 132223 132241 . - 0 ID=Phyra74269;Parent=Phyra74269;rank=4 scaffold_7 . exon 132223 132241 . - . ID=Phyra74269.4;Parent=Phyra74269;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_7 . CDS 132412 133190 . - 0 ID=Phyra74269;Parent=Phyra74269;rank=3 scaffold_7 . exon 132412 133190 . - . ID=Phyra74269.3;Parent=Phyra74269;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 133307 133368 . - 0 ID=Phyra74269;Parent=Phyra74269;rank=2 scaffold_7 . exon 133307 133368 . - . ID=Phyra74269.2;Parent=Phyra74269;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 133517 134284 . - 0 ID=Phyra74269;Parent=Phyra74269;rank=1 scaffold_7 . exon 133517 134284 . - . ID=Phyra74269.1;Parent=Phyra74269;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 136367 137236 . - . ID=Phyra74270;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000041;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 136367 137236 . - . ID=Phyra74270;Parent=Phyra74270;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 136367 137236 . - 0 ID=Phyra74270;Parent=Phyra74270;rank=1 scaffold_7 . exon 136367 137236 . - . ID=Phyra74270.1;Parent=Phyra74270;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 138839 139690 . - . ID=Phyra74271;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000042;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 138839 139690 . - . ID=Phyra74271;Parent=Phyra74271;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 138839 139690 . - 0 ID=Phyra74271;Parent=Phyra74271;rank=1 scaffold_7 . exon 138839 139690 . - . ID=Phyra74271.1;Parent=Phyra74271;constitutive=1;rank=1 scaffold_7 . repeat_region 141649 141658 . ? . description=dust scaffold_7 ensembl protein_coding_gene 147411 149208 . + . ID=Phyra71183;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_7000002;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 147411 149208 . + . ID=Phyra71183;Parent=Phyra71183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 147411 149155 . + 0 ID=Phyra71183;Parent=Phyra71183;rank=1 scaffold_7 . exon 147411 149155 . + . ID=Phyra71183.1;Parent=Phyra71183;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 149193 149208 . + 0 ID=Phyra71183;Parent=Phyra71183;rank=2 scaffold_7 . exon 149193 149208 . + . ID=Phyra71183.2;Parent=Phyra71183;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 ensembl protein_coding_gene 140756 141559 . + . ID=Phyra74272;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000043;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 140756 141559 . + . ID=Phyra74272;Parent=Phyra74272;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 140756 141559 . + 0 ID=Phyra74272;Parent=Phyra74272;rank=1 scaffold_7 . exon 140756 141559 . + . ID=Phyra74272.1;Parent=Phyra74272;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 142940 144790 . + . ID=Phyra74273;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000044;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 142940 144790 . + . ID=Phyra74273;Parent=Phyra74273;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 142940 144790 . + 0 ID=Phyra74273;Parent=Phyra74273;rank=1 scaffold_7 . exon 142940 144790 . + . ID=Phyra74273.1;Parent=Phyra74273;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 145511 146692 . - . ID=Phyra74274;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000045;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 145511 146692 . - . ID=Phyra74274;Parent=Phyra74274;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 145511 146692 . - 0 ID=Phyra74274;Parent=Phyra74274;rank=1 scaffold_7 . exon 145511 146692 . - . ID=Phyra74274.1;Parent=Phyra74274;constitutive=1;rank=1 scaffold_7 . biological_region 154054 154058 0.999 - . logic_name=eponine scaffold_7 . biological_region 154596 154599 0.999 - . logic_name=eponine scaffold_7 . biological_region 157557 157559 0.999 + . logic_name=eponine scaffold_7 . repeat_region 159144 159942 . - . description=Polinton-1_PI scaffold_7 ensembl protein_coding_gene 150931 151419 . + . ID=Phyra74276;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000047;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 150931 151419 . + . ID=Phyra74276;Parent=Phyra74276;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 150931 151419 . + 0 ID=Phyra74276;Parent=Phyra74276;rank=1 scaffold_7 . exon 150931 151419 . + . ID=Phyra74276.1;Parent=Phyra74276;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 153193 154053 . - . ID=Phyra74277;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000048;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 153193 154053 . - . ID=Phyra74277;Parent=Phyra74277;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 153193 154053 . - 0 ID=Phyra74277;Parent=Phyra74277;rank=1 scaffold_7 . exon 153193 154053 . - . ID=Phyra74277.1;Parent=Phyra74277;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 154300 155460 . + . ID=Phyra74278;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000049;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 154300 155460 . + . ID=Phyra74278;Parent=Phyra74278;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 154300 154717 . + 0 ID=Phyra74278;Parent=Phyra74278;rank=1 scaffold_7 . exon 154300 154717 . + . ID=Phyra74278.1;Parent=Phyra74278;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 154771 155297 . + 0 ID=Phyra74278;Parent=Phyra74278;rank=2 scaffold_7 . exon 154771 155297 . + . ID=Phyra74278.2;Parent=Phyra74278;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 155359 155460 . + 0 ID=Phyra74278;Parent=Phyra74278;rank=3 scaffold_7 . exon 155359 155460 . + . ID=Phyra74278.3;Parent=Phyra74278;constitutive=1;rank=3 scaffold_7 ensembl protein_coding_gene 155618 159029 . - . ID=Phyra74279;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000050;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 155618 159029 . - . ID=Phyra74279;Parent=Phyra74279;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 155618 157745 . - 0 ID=Phyra74279;Parent=Phyra74279;rank=3 scaffold_7 . exon 155618 157745 . - . ID=Phyra74279.3;Parent=Phyra74279;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 157826 157935 . - 0 ID=Phyra74279;Parent=Phyra74279;rank=2 scaffold_7 . exon 157826 157935 . - . ID=Phyra74279.2;Parent=Phyra74279;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 158088 159029 . - 0 ID=Phyra74279;Parent=Phyra74279;rank=1 scaffold_7 . exon 158088 159029 . - . ID=Phyra74279.1;Parent=Phyra74279;constitutive=1;rank=1 scaffold_7 . repeat_region 161526 161545 . ? . description=dust scaffold_7 . repeat_region 162645 162730 . ? . description=trf scaffold_7 . repeat_region 162699 162830 . ? . description=trf scaffold_7 . repeat_region 166128 166137 . ? . description=dust scaffold_7 . repeat_region 166805 166813 . ? . description=dust scaffold_7 . repeat_region 169327 169353 . ? . description=dust scaffold_7 ensembl protein_coding_gene 160292 163111 . - . ID=Phyra74280;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000051;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 160292 163111 . - . ID=Phyra74280;Parent=Phyra74280;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 160292 161465 . - 0 ID=Phyra74280;Parent=Phyra74280;rank=2 scaffold_7 . exon 160292 161465 . - . ID=Phyra74280.2;Parent=Phyra74280;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 161547 163111 . - 0 ID=Phyra74280;Parent=Phyra74280;rank=1 scaffold_7 . exon 161547 163111 . - . ID=Phyra74280.1;Parent=Phyra74280;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . repeat_region 165380 173454 . + . description=Polinton-1_PI scaffold_7 . repeat_region 173630 178812 . - . description=Polinton-1_PI scaffold_7 . repeat_region 181062 181069 . ? . description=dust scaffold_7 . biological_region 181454 181456 0.999 + . logic_name=eponine scaffold_7 . repeat_region 184408 184477 . ? . description=trf scaffold_7 . repeat_region 185304 185594 . ? . description=dust scaffold_7 . repeat_region 187377 187384 . ? . description=dust scaffold_7 . biological_region 187769 187771 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 181096 185056 . - . ID=Phyra74281;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000052;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 181096 185056 . - . ID=Phyra74281;Parent=Phyra74281;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 181096 181642 . - 0 ID=Phyra74281;Parent=Phyra74281;rank=3 scaffold_7 . exon 181096 181642 . - . ID=Phyra74281.3;Parent=Phyra74281;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 181723 181832 . - 0 ID=Phyra74281;Parent=Phyra74281;rank=2 scaffold_7 . exon 181723 181832 . - . ID=Phyra74281.2;Parent=Phyra74281;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 181985 185056 . - 0 ID=Phyra74281;Parent=Phyra74281;rank=1 scaffold_7 . exon 181985 185056 . - . ID=Phyra74281.1;Parent=Phyra74281;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 187411 191371 . - . ID=Phyra74282;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000053;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 187411 191371 . - . ID=Phyra74282;Parent=Phyra74282;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 187411 187957 . - 0 ID=Phyra74282;Parent=Phyra74282;rank=3 scaffold_7 . exon 187411 187957 . - . ID=Phyra74282.3;Parent=Phyra74282;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 188038 188147 . - 0 ID=Phyra74282;Parent=Phyra74282;rank=2 scaffold_7 . exon 188038 188147 . - . ID=Phyra74282.2;Parent=Phyra74282;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 188300 191371 . - 0 ID=Phyra74282;Parent=Phyra74282;rank=1 scaffold_7 . exon 188300 191371 . - . ID=Phyra74282.1;Parent=Phyra74282;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 192576 192971 . - . ID=Phyra52533;biotype=protein_coding;external_name=gwEuk.7.117.1;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 192576 192971 . - . ID=Phyra52533;Parent=Phyra52533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 192576 192971 . - 0 ID=Phyra52533;Parent=Phyra52533;rank=1 scaffold_7 . exon 192576 192971 . - . ID=Phyra52533.1;Parent=Phyra52533;constitutive=1;rank=1 scaffold_7 . repeat_region 202558 202631 . ? . description=trf scaffold_7 . biological_region 203440 203444 0.999 + . logic_name=eponine scaffold_7 . biological_region 203457 203462 0.999 - . logic_name=eponine scaffold_7 . repeat_region 204284 204598 . ? . description=trf scaffold_7 . biological_region 206407 206408 0.999 - . logic_name=eponine scaffold_7 . biological_region 207010 207010 0.999 - . logic_name=eponine scaffold_7 . repeat_region 208050 208099 . ? . description=dust scaffold_7 . biological_region 208556 208561 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 205307 206548 . - . ID=Phyra71184;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_7000003;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 205307 206548 . - . ID=Phyra71184;Parent=Phyra71184;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 205307 206548 . - 0 ID=Phyra71184;Parent=Phyra71184;rank=1 scaffold_7 . exon 205307 206548 . - . ID=Phyra71184.1;Parent=Phyra71184;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 209107 211389 . + . ID=Phyra71185;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_7000004;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 209107 211389 . + . ID=Phyra71185;Parent=Phyra71185;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 209107 211389 . + 0 ID=Phyra71185;Parent=Phyra71185;rank=1 scaffold_7 . exon 209107 211389 . + . ID=Phyra71185.1;Parent=Phyra71185;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 201332 202388 . - . ID=Phyra74284;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000055;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 201332 202388 . - . ID=Phyra74284;Parent=Phyra74284;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 201332 201367 . - 0 ID=Phyra74284;Parent=Phyra74284;rank=2 scaffold_7 . exon 201332 201367 . - . ID=Phyra74284.2;Parent=Phyra74284;constitutive=1;rank=2 scaffold_7 . CDS 201510 202388 . - 0 ID=Phyra74284;Parent=Phyra74284;rank=1 scaffold_7 . exon 201510 202388 . - . ID=Phyra74284.1;Parent=Phyra74284;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 203298 205091 . + . ID=Phyra74285;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000056;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 203298 205091 . + . ID=Phyra74285;Parent=Phyra74285;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 203298 205091 . + 0 ID=Phyra74285;Parent=Phyra74285;rank=1 scaffold_7 . exon 203298 205091 . + . ID=Phyra74285.1;Parent=Phyra74285;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 206667 209003 . + . ID=Phyra74287;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000058;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 206667 209003 . + . ID=Phyra74287;Parent=Phyra74287;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 206667 206854 . + 0 ID=Phyra74287;Parent=Phyra74287;rank=1 scaffold_7 . exon 206667 206854 . + . ID=Phyra74287.1;Parent=Phyra74287;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 206874 206958 . + 0 ID=Phyra74287;Parent=Phyra74287;rank=2 scaffold_7 . exon 206874 206958 . + . ID=Phyra74287.2;Parent=Phyra74287;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 207344 207386 . + 0 ID=Phyra74287;Parent=Phyra74287;rank=3 scaffold_7 . exon 207344 207386 . + . ID=Phyra74287.3;Parent=Phyra74287;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_7 . CDS 207527 207556 . + 0 ID=Phyra74287;Parent=Phyra74287;rank=4 scaffold_7 . exon 207527 207556 . + . ID=Phyra74287.4;Parent=Phyra74287;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_7 . CDS 208160 209003 . + 0 ID=Phyra74287;Parent=Phyra74287;rank=5 scaffold_7 . exon 208160 209003 . + . ID=Phyra74287.5;Parent=Phyra74287;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_7 ensembl protein_coding_gene 212058 213968 . + . ID=Phyra74289;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000060;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 212058 213968 . + . ID=Phyra74289;Parent=Phyra74289;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 212058 213968 . + 0 ID=Phyra74289;Parent=Phyra74289;rank=1 scaffold_7 . exon 212058 213968 . + . ID=Phyra74289.1;Parent=Phyra74289;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 214040 215242 . - . ID=Phyra74290;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000061;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 214040 215242 . - . ID=Phyra74290;Parent=Phyra74290;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 214040 215030 . - 0 ID=Phyra74290;Parent=Phyra74290;rank=2 scaffold_7 . exon 214040 215030 . - . ID=Phyra74290.2;Parent=Phyra74290;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 215178 215242 . - 0 ID=Phyra74290;Parent=Phyra74290;rank=1 scaffold_7 . exon 215178 215242 . - . ID=Phyra74290.1;Parent=Phyra74290;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 215477 216639 . + . ID=Phyra74291;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000062;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 215477 216639 . + . ID=Phyra74291;Parent=Phyra74291;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 215477 216284 . + 0 ID=Phyra74291;Parent=Phyra74291;rank=1 scaffold_7 . exon 215477 216284 . + . ID=Phyra74291.1;Parent=Phyra74291;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 216371 216639 . + 0 ID=Phyra74291;Parent=Phyra74291;rank=2 scaffold_7 . exon 216371 216639 . + . ID=Phyra74291.2;Parent=Phyra74291;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 ensembl protein_coding_gene 216950 217276 . - . ID=Phyra74292;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000063;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 216950 217276 . - . ID=Phyra74292;Parent=Phyra74292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 216950 217276 . - 0 ID=Phyra74292;Parent=Phyra74292;rank=1 scaffold_7 . exon 216950 217276 . - . ID=Phyra74292.1;Parent=Phyra74292;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 217946 218662 . + . ID=Phyra74293;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000064;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 217946 218662 . + . ID=Phyra74293;Parent=Phyra74293;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 217946 218662 . + 0 ID=Phyra74293;Parent=Phyra74293;rank=1 scaffold_7 . exon 217946 218662 . + . ID=Phyra74293.1;Parent=Phyra74293;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 218855 219872 . - . ID=Phyra74294;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000065;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 218855 219872 . - . ID=Phyra74294;Parent=Phyra74294;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 218855 218940 . - 0 ID=Phyra74294;Parent=Phyra74294;rank=4 scaffold_7 . exon 218855 218940 . - . ID=Phyra74294.4;Parent=Phyra74294;constitutive=1;ensembl_phase=1;rank=4 scaffold_7 . CDS 219055 219418 . - 0 ID=Phyra74294;Parent=Phyra74294;rank=3 scaffold_7 . exon 219055 219418 . - . ID=Phyra74294.3;Parent=Phyra74294;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_7 . CDS 219479 219568 . - 0 ID=Phyra74294;Parent=Phyra74294;rank=2 scaffold_7 . CDS 219630 219872 . - 0 ID=Phyra74294;Parent=Phyra74294;rank=1 scaffold_7 . biological_region 219899 219904 0.999 - . logic_name=eponine scaffold_7 . repeat_region 221800 221883 . ? . description=trf scaffold_7 . biological_region 225399 225401 0.999 - . logic_name=eponine scaffold_7 . repeat_region 227191 227201 . ? . description=dust scaffold_7 ensembl protein_coding_gene 222382 222960 . - . ID=Phyra52423;biotype=protein_coding;external_name=gwEuk.7.7.1;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 222382 222960 . - . ID=Phyra52423;Parent=Phyra52423;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 222382 222960 . - 0 ID=Phyra52423;Parent=Phyra52423;rank=1 scaffold_7 . exon 222382 222960 . - . ID=Phyra52423.1;Parent=Phyra52423;constitutive=1;rank=1 scaffold_7 . exon 219479 219568 . - . ID=Phyra74294.2;Parent=Phyra74294;constitutive=1;rank=2 scaffold_7 . exon 219630 219872 . - . ID=Phyra74294.1;Parent=Phyra74294;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 220450 221545 . + . ID=Phyra74295;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000066;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 220450 221545 . + . ID=Phyra74295;Parent=Phyra74295;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 220450 220755 . + 0 ID=Phyra74295;Parent=Phyra74295;rank=1 scaffold_7 . exon 220450 220755 . + . ID=Phyra74295.1;Parent=Phyra74295;constitutive=1;rank=1 scaffold_7 . CDS 220814 220934 . + 0 ID=Phyra74295;Parent=Phyra74295;rank=2 scaffold_7 . exon 220814 220934 . + . ID=Phyra74295.2;Parent=Phyra74295;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_7 . CDS 221010 221545 . + 0 ID=Phyra74295;Parent=Phyra74295;rank=3 scaffold_7 . exon 221010 221545 . + . ID=Phyra74295.3;Parent=Phyra74295;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 ensembl protein_coding_gene 224651 225055 . + . ID=Phyra74297;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000068;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 224651 225055 . + . ID=Phyra74297;Parent=Phyra74297;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 224651 225055 . + 0 ID=Phyra74297;Parent=Phyra74297;rank=1 scaffold_7 . exon 224651 225055 . + . ID=Phyra74297.1;Parent=Phyra74297;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 234925 235380 . + . ID=Phyra52426;biotype=protein_coding;external_name=gwEuk.7.10.1;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 234925 235380 . + . ID=Phyra52426;Parent=Phyra52426;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 234925 235380 . + 0 ID=Phyra52426;Parent=Phyra52426;rank=1 scaffold_7 . exon 234925 235380 . + . ID=Phyra52426.1;Parent=Phyra52426;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 230006 231011 . + . ID=Phyra74298;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000069;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 230006 231011 . + . ID=Phyra74298;Parent=Phyra74298;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 230006 230239 . + 0 ID=Phyra74298;Parent=Phyra74298;rank=1 scaffold_7 . exon 230006 230239 . + . ID=Phyra74298.1;Parent=Phyra74298;constitutive=1;rank=1 scaffold_7 . CDS 230391 231011 . + 0 ID=Phyra74298;Parent=Phyra74298;rank=2 scaffold_7 . exon 230391 231011 . + . ID=Phyra74298.2;Parent=Phyra74298;constitutive=1;rank=2 scaffold_7 ensembl protein_coding_gene 232356 233609 . - . ID=Phyra74299;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000070;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 232356 233609 . - . ID=Phyra74299;Parent=Phyra74299;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 232356 233609 . - 0 ID=Phyra74299;Parent=Phyra74299;rank=1 scaffold_7 . exon 232356 233609 . - . ID=Phyra74299.1;Parent=Phyra74299;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 238553 239806 . - . ID=Phyra74300;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000071;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 238553 239806 . - . ID=Phyra74300;Parent=Phyra74300;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 238553 239806 . - 0 ID=Phyra74300;Parent=Phyra74300;rank=1 scaffold_7 . exon 238553 239806 . - . ID=Phyra74300.1;Parent=Phyra74300;constitutive=1;rank=1 scaffold_7 . repeat_region 240552 240601 . ? . description=dust scaffold_7 . repeat_region 242039 242096 . ? . description=trf scaffold_7 . repeat_region 242050 242114 . ? . description=trf scaffold_7 . repeat_region 243595 243623 . ? . description=trf scaffold_7 . repeat_region 244282 244311 . ? . description=trf scaffold_7 . biological_region 244815 244816 0.999 - . logic_name=eponine scaffold_7 . repeat_region 246448 246478 . ? . description=dust scaffold_7 . repeat_region 247476 247511 . ? . description=trf scaffold_7 ensembl protein_coding_gene 240474 241787 . - . ID=Phyra74301;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000072;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 240474 241787 . - . ID=Phyra74301;Parent=Phyra74301;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 240474 240476 . - 0 ID=Phyra74301;Parent=Phyra74301;rank=2 scaffold_7 . exon 240474 240476 . - . ID=Phyra74301.2;Parent=Phyra74301;constitutive=1;rank=2 scaffold_7 . CDS 240618 241787 . - 0 ID=Phyra74301;Parent=Phyra74301;rank=1 scaffold_7 . exon 240618 241787 . - . ID=Phyra74301.1;Parent=Phyra74301;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 245311 246632 . - . ID=Phyra74302;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000073;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 245311 246632 . - . ID=Phyra74302;Parent=Phyra74302;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 245311 246248 . - 0 ID=Phyra74302;Parent=Phyra74302;rank=2 scaffold_7 . exon 245311 246248 . - . ID=Phyra74302.2;Parent=Phyra74302;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 246275 246632 . - 0 ID=Phyra74302;Parent=Phyra74302;rank=1 scaffold_7 . exon 246275 246632 . - . ID=Phyra74302.1;Parent=Phyra74302;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . repeat_region 249548 249659 . + . description=Polinton-1_PI scaffold_7 . repeat_region 250029 250341 . + . description=Polinton-1_PI scaffold_7 . repeat_region 250624 251639 . - . description=Polinton-1_PI scaffold_7 . repeat_region 253688 253909 . - . description=GypsyPi-1c_I-int scaffold_7 . repeat_region 254284 256539 . - . description=GypsyPi-1c_I-int scaffold_7 ensembl protein_coding_gene 252118 253671 . + . ID=Phyra74303;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000074;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 252118 253671 . + . ID=Phyra74303;Parent=Phyra74303;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 252118 253671 . + 0 ID=Phyra74303;Parent=Phyra74303;rank=1 scaffold_7 . exon 252118 253671 . + . ID=Phyra74303.1;Parent=Phyra74303;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 255937 256829 . - . ID=Phyra74304;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000075;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 255937 256829 . - . ID=Phyra74304;Parent=Phyra74304;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 255937 256466 . - 0 ID=Phyra74304;Parent=Phyra74304;rank=2 scaffold_7 . exon 255937 256466 . - . ID=Phyra74304.2;Parent=Phyra74304;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 256601 256829 . - 0 ID=Phyra74304;Parent=Phyra74304;rank=1 scaffold_7 . exon 256601 256829 . - . ID=Phyra74304.1;Parent=Phyra74304;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . repeat_region 259361 259417 . ? . description=trf scaffold_7 . repeat_region 259362 259416 . ? . description=trf scaffold_7 . repeat_region 259489 259497 . ? . description=dust scaffold_7 . repeat_region 259699 259720 . ? . description=trf scaffold_7 . repeat_region 259699 259720 . ? . description=dust scaffold_7 . repeat_region 260711 260718 . ? . description=dust scaffold_7 . repeat_region 261069 261233 . ? . description=trf scaffold_7 . biological_region 261906 261906 0.999 - . logic_name=eponine scaffold_7 . repeat_region 261929 261936 . ? . description=dust scaffold_7 . repeat_region 266059 266073 . ? . description=dust scaffold_7 ensembl protein_coding_gene 266542 266913 . + . ID=Phyra52427;biotype=protein_coding;external_name=gwEuk.7.11.1;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 266542 266913 . + . ID=Phyra52427;Parent=Phyra52427;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 266542 266913 . + 0 ID=Phyra52427;Parent=Phyra52427;rank=1 scaffold_7 . exon 266542 266913 . + . ID=Phyra52427.1;Parent=Phyra52427;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 271957 272970 . - . ID=Phyra74305;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000076;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 271957 272970 . - . ID=Phyra74305;Parent=Phyra74305;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 271957 272655 . - 0 ID=Phyra74305;Parent=Phyra74305;rank=3 scaffold_7 . exon 271957 272655 . - . ID=Phyra74305.3;Parent=Phyra74305;constitutive=1;rank=3 scaffold_7 . CDS 272717 272768 . - 0 ID=Phyra74305;Parent=Phyra74305;rank=2 scaffold_7 . exon 272717 272768 . - . ID=Phyra74305.2;Parent=Phyra74305;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 272837 272970 . - 0 ID=Phyra74305;Parent=Phyra74305;rank=1 scaffold_7 . exon 272837 272970 . - . ID=Phyra74305.1;Parent=Phyra74305;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 274140 274877 . - . ID=Phyra74306;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000077;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 274140 274877 . - . ID=Phyra74306;Parent=Phyra74306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 274140 274877 . - 0 ID=Phyra74306;Parent=Phyra74306;rank=1 scaffold_7 . exon 274140 274877 . - . ID=Phyra74306.1;Parent=Phyra74306;constitutive=1;rank=1 scaffold_7 . biological_region 284611 284613 0.999 + . logic_name=eponine scaffold_7 . biological_region 286993 286993 0.999 - . logic_name=eponine scaffold_7 . biological_region 288286 288287 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 288346 289929 . + . ID=Phyra52439;biotype=protein_coding;external_name=gwEuk.7.23.1;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 288346 289929 . + . ID=Phyra52439;Parent=Phyra52439;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 288346 289929 . + 0 ID=Phyra52439;Parent=Phyra52439;rank=1 scaffold_7 . exon 288346 289929 . + . ID=Phyra52439.1;Parent=Phyra52439;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 281788 282537 . + . ID=Phyra74307;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000078;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 281788 282537 . + . ID=Phyra74307;Parent=Phyra74307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 281788 282537 . + 0 ID=Phyra74307;Parent=Phyra74307;rank=1 scaffold_7 . exon 281788 282537 . + . ID=Phyra74307.1;Parent=Phyra74307;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 284037 285611 . - . ID=Phyra74308;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000079;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 284037 285611 . - . ID=Phyra74308;Parent=Phyra74308;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 284037 285611 . - 0 ID=Phyra74308;Parent=Phyra74308;rank=1 scaffold_7 . exon 284037 285611 . - . ID=Phyra74308.1;Parent=Phyra74308;constitutive=1;rank=1 scaffold_7 . repeat_region 291259 291266 . ? . description=dust scaffold_7 ensembl protein_coding_gene 290361 291089 . - . ID=Phyra52440;biotype=protein_coding;external_name=gwEuk.7.24.1;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 290361 291089 . - . ID=Phyra52440;Parent=Phyra52440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 290361 291089 . - 0 ID=Phyra52440;Parent=Phyra52440;rank=1 scaffold_7 . exon 290361 291089 . - . ID=Phyra52440.1;Parent=Phyra52440;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 292118 292867 . - . ID=Phyra74310;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000081;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 292118 292867 . - . ID=Phyra74310;Parent=Phyra74310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 292118 292867 . - 0 ID=Phyra74310;Parent=Phyra74310;rank=1 scaffold_7 . exon 292118 292867 . - . ID=Phyra74310.1;Parent=Phyra74310;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 293882 295711 . + . ID=Phyra74311;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000082;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 293882 295711 . + . ID=Phyra74311;Parent=Phyra74311;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 293882 295711 . + 0 ID=Phyra74311;Parent=Phyra74311;rank=1 scaffold_7 . exon 293882 295711 . + . ID=Phyra74311.1;Parent=Phyra74311;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 296052 297815 . + . ID=Phyra74312;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000083;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 296052 297815 . + . ID=Phyra74312;Parent=Phyra74312;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 296052 297815 . + 0 ID=Phyra74312;Parent=Phyra74312;rank=1 scaffold_7 . exon 296052 297815 . + . ID=Phyra74312.1;Parent=Phyra74312;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 297919 299673 . - . ID=Phyra74313;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000084;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 297919 299673 . - . ID=Phyra74313;Parent=Phyra74313;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 297919 299673 . - 0 ID=Phyra74313;Parent=Phyra74313;rank=1 scaffold_7 . exon 297919 299673 . - . ID=Phyra74313.1;Parent=Phyra74313;constitutive=1;rank=1 scaffold_7 . biological_region 305344 305344 0.999 + . logic_name=eponine scaffold_7 . biological_region 305830 305831 0.999 - . logic_name=eponine scaffold_7 . biological_region 307902 307905 0.999 - . logic_name=eponine scaffold_7 . biological_region 308494 308497 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 300353 301672 . + . ID=Phyra74314;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000085;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 300353 301672 . + . ID=Phyra74314;Parent=Phyra74314;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 300353 300721 . + 0 ID=Phyra74314;Parent=Phyra74314;rank=1 scaffold_7 . exon 300353 300721 . + . ID=Phyra74314.1;Parent=Phyra74314;constitutive=1;rank=1 scaffold_7 . CDS 300802 300981 . + 0 ID=Phyra74314;Parent=Phyra74314;rank=2 scaffold_7 . exon 300802 300981 . + . ID=Phyra74314.2;Parent=Phyra74314;constitutive=1;rank=2 scaffold_7 . CDS 301049 301339 . + 0 ID=Phyra74314;Parent=Phyra74314;rank=3 scaffold_7 . exon 301049 301339 . + . ID=Phyra74314.3;Parent=Phyra74314;constitutive=1;rank=3 scaffold_7 . CDS 301403 301672 . + 0 ID=Phyra74314;Parent=Phyra74314;rank=4 scaffold_7 . exon 301403 301672 . + . ID=Phyra74314.4;Parent=Phyra74314;constitutive=1;rank=4 scaffold_7 ensembl protein_coding_gene 304586 306322 . + . ID=Phyra74315;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000086;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 304586 306322 . + . ID=Phyra74315;Parent=Phyra74315;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 304586 306322 . + 0 ID=Phyra74315;Parent=Phyra74315;rank=1 scaffold_7 . exon 304586 306322 . + . ID=Phyra74315.1;Parent=Phyra74315;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 306880 308703 . + . ID=Phyra74316;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000087;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 306880 308703 . + . ID=Phyra74316;Parent=Phyra74316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 306880 308703 . + 0 ID=Phyra74316;Parent=Phyra74316;rank=1 scaffold_7 . exon 306880 308703 . + . ID=Phyra74316.1;Parent=Phyra74316;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 308917 310365 . - . ID=Phyra74317;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000088;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 308917 310365 . - . ID=Phyra74317;Parent=Phyra74317;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 308917 310365 . - 0 ID=Phyra74317;Parent=Phyra74317;rank=1 scaffold_7 . exon 308917 310365 . - . ID=Phyra74317.1;Parent=Phyra74317;constitutive=1;rank=1 scaffold_7 . repeat_region 314503 314510 . ? . description=dust scaffold_7 . repeat_region 318015 318024 . ? . description=dust scaffold_7 . repeat_region 318338 318367 . ? . description=trf scaffold_7 ensembl protein_coding_gene 311574 313535 . - . ID=Phyra74318;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000089;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 311574 313535 . - . ID=Phyra74318;Parent=Phyra74318;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 311574 313535 . - 0 ID=Phyra74318;Parent=Phyra74318;rank=1 scaffold_7 . exon 311574 313535 . - . ID=Phyra74318.1;Parent=Phyra74318;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 315460 316780 . - . ID=Phyra74319;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000090;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 315460 316780 . - . ID=Phyra74319;Parent=Phyra74319;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 315460 316293 . - 0 ID=Phyra74319;Parent=Phyra74319;rank=3 scaffold_7 . exon 315460 316293 . - . ID=Phyra74319.3;Parent=Phyra74319;constitutive=1;rank=3 scaffold_7 . CDS 316365 316475 . - 0 ID=Phyra74319;Parent=Phyra74319;rank=2 scaffold_7 . exon 316365 316475 . - . ID=Phyra74319.2;Parent=Phyra74319;constitutive=1;rank=2 scaffold_7 . CDS 316550 316780 . - 0 ID=Phyra74319;Parent=Phyra74319;rank=1 scaffold_7 . exon 316550 316780 . - . ID=Phyra74319.1;Parent=Phyra74319;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 318403 320634 . - . ID=Phyra74320;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000091;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 318403 320634 . - . ID=Phyra74320;Parent=Phyra74320;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 318403 320634 . - 0 ID=Phyra74320;Parent=Phyra74320;rank=1 scaffold_7 . exon 318403 320634 . - . ID=Phyra74320.1;Parent=Phyra74320;constitutive=1;rank=1 scaffold_7 . biological_region 327876 327876 0.999 + . logic_name=eponine scaffold_7 . biological_region 327977 327978 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 323433 325568 . - . ID=Phyra74321;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000092;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 323433 325568 . - . ID=Phyra74321;Parent=Phyra74321;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 323433 325568 . - 0 ID=Phyra74321;Parent=Phyra74321;rank=1 scaffold_7 . exon 323433 325568 . - . ID=Phyra74321.1;Parent=Phyra74321;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 327123 328277 . - . ID=Phyra74322;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000093;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 327123 328277 . - . ID=Phyra74322;Parent=Phyra74322;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 327123 327170 . - 0 ID=Phyra74322;Parent=Phyra74322;rank=3 scaffold_7 . exon 327123 327170 . - . ID=Phyra74322.3;Parent=Phyra74322;constitutive=1;rank=3 scaffold_7 . CDS 327338 327407 . - 0 ID=Phyra74322;Parent=Phyra74322;rank=2 scaffold_7 . exon 327338 327407 . - . ID=Phyra74322.2;Parent=Phyra74322;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 327526 328277 . - 0 ID=Phyra74322;Parent=Phyra74322;rank=1 scaffold_7 . exon 327526 328277 . - . ID=Phyra74322.1;Parent=Phyra74322;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . repeat_region 330544 330557 . ? . description=dust scaffold_7 . repeat_region 332978 334390 . ? . description=dust scaffold_7 . repeat_region 335718 335725 . ? . description=dust scaffold_7 . repeat_region 336069 336076 . ? . description=dust scaffold_7 . repeat_region 338438 338454 . ? . description=dust scaffold_7 . repeat_region 338641 338648 . ? . description=dust scaffold_7 ensembl protein_coding_gene 329192 330793 . + . ID=Phyra74323;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000094;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 329192 330793 . + . ID=Phyra74323;Parent=Phyra74323;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 329192 330793 . + 0 ID=Phyra74323;Parent=Phyra74323;rank=1 scaffold_7 . exon 329192 330793 . + . ID=Phyra74323.1;Parent=Phyra74323;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 341220 341912 . + . ID=Phyra74324;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000095;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 341220 341912 . + . ID=Phyra74324;Parent=Phyra74324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 341220 341912 . + 0 ID=Phyra74324;Parent=Phyra74324;rank=1 scaffold_7 . exon 341220 341912 . + . ID=Phyra74324.1;Parent=Phyra74324;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 344173 344880 . + . ID=Phyra74325;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000096;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 344173 344880 . + . ID=Phyra74325;Parent=Phyra74325;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 344173 344880 . + 0 ID=Phyra74325;Parent=Phyra74325;rank=1 scaffold_7 . exon 344173 344880 . + . ID=Phyra74325.1;Parent=Phyra74325;constitutive=1;rank=1 scaffold_7 . repeat_region 346879 351736 . ? . description=dust scaffold_7 . repeat_region 351861 351957 . ? . description=trf scaffold_7 . repeat_region 355540 355547 . ? . description=dust scaffold_7 . repeat_region 355933 355945 . ? . description=dust scaffold_7 ensembl protein_coding_gene 353506 354213 . - . ID=Phyra74326;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000097;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 353506 354213 . - . ID=Phyra74326;Parent=Phyra74326;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 353506 354213 . - 0 ID=Phyra74326;Parent=Phyra74326;rank=1 scaffold_7 . exon 353506 354213 . - . ID=Phyra74326.1;Parent=Phyra74326;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 360773 361869 . + . ID=Phyra74327;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000098;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 360773 361869 . + . ID=Phyra74327;Parent=Phyra74327;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 360773 360887 . + 0 ID=Phyra74327;Parent=Phyra74327;rank=1 scaffold_7 . exon 360773 360887 . + . ID=Phyra74327.1;Parent=Phyra74327;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 361124 361869 . + 0 ID=Phyra74327;Parent=Phyra74327;rank=2 scaffold_7 . exon 361124 361869 . + . ID=Phyra74327.2;Parent=Phyra74327;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . repeat_region 369021 374139 . ? . description=dust scaffold_7 . biological_region 375308 375312 0.999 + . logic_name=eponine scaffold_7 . biological_region 376939 376940 0.999 - . logic_name=eponine scaffold_7 . biological_region 376975 376980 0.999 + . logic_name=eponine scaffold_7 . repeat_region 378851 379895 . ? . description=dust scaffold_7 ensembl protein_coding_gene 375406 378561 . + . ID=Phyra74328;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000099;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 375406 378561 . + . ID=Phyra74328;Parent=Phyra74328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 375406 375909 . + 0 ID=Phyra74328;Parent=Phyra74328;rank=1 scaffold_7 . exon 375406 375909 . + . ID=Phyra74328.1;Parent=Phyra74328;constitutive=1;rank=1 scaffold_7 . CDS 376104 376175 . + 0 ID=Phyra74328;Parent=Phyra74328;rank=2 scaffold_7 . exon 376104 376175 . + . ID=Phyra74328.2;Parent=Phyra74328;constitutive=1;rank=2 scaffold_7 . CDS 376251 378464 . + 0 ID=Phyra74328;Parent=Phyra74328;rank=3 scaffold_7 . exon 376251 378464 . + . ID=Phyra74328.3;Parent=Phyra74328;constitutive=1;rank=3 scaffold_7 . CDS 378523 378561 . + 0 ID=Phyra74328;Parent=Phyra74328;rank=4 scaffold_7 . exon 378523 378561 . + . ID=Phyra74328.4;Parent=Phyra74328;constitutive=1;rank=4 scaffold_7 . repeat_region 387232 387319 . ? . description=trf scaffold_7 ensembl protein_coding_gene 380737 381195 . - . ID=Phyra74329;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000100;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 380737 381195 . - . ID=Phyra74329;Parent=Phyra74329;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 380737 381195 . - 0 ID=Phyra74329;Parent=Phyra74329;rank=1 scaffold_7 . exon 380737 381195 . - . ID=Phyra74329.1;Parent=Phyra74329;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 383895 385312 . - . ID=Phyra74330;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000101;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 383895 385312 . - . ID=Phyra74330;Parent=Phyra74330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 383895 384789 . - 0 ID=Phyra74330;Parent=Phyra74330;rank=2 scaffold_7 . exon 383895 384789 . - . ID=Phyra74330.2;Parent=Phyra74330;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 384927 385312 . - 0 ID=Phyra74330;Parent=Phyra74330;rank=1 scaffold_7 . exon 384927 385312 . - . ID=Phyra74330.1;Parent=Phyra74330;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . repeat_region 392215 392223 . ? . description=dust scaffold_7 . biological_region 395598 395601 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 390558 391417 . - . ID=Phyra74331;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000102;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 390558 391417 . - . ID=Phyra74331;Parent=Phyra74331;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 390558 390626 . - 0 ID=Phyra74331;Parent=Phyra74331;rank=4 scaffold_7 . exon 390558 390626 . - . ID=Phyra74331.4;Parent=Phyra74331;constitutive=1;rank=4 scaffold_7 . CDS 390709 390930 . - 0 ID=Phyra74331;Parent=Phyra74331;rank=3 scaffold_7 . exon 390709 390930 . - . ID=Phyra74331.3;Parent=Phyra74331;constitutive=1;rank=3 scaffold_7 . CDS 391046 391128 . - 0 ID=Phyra74331;Parent=Phyra74331;rank=2 scaffold_7 . exon 391046 391128 . - . ID=Phyra74331.2;Parent=Phyra74331;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 391264 391417 . - 0 ID=Phyra74331;Parent=Phyra74331;rank=1 scaffold_7 . exon 391264 391417 . - . ID=Phyra74331.1;Parent=Phyra74331;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 395368 396528 . + . ID=Phyra74332;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000103;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 395368 396528 . + . ID=Phyra74332;Parent=Phyra74332;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 395368 396528 . + 0 ID=Phyra74332;Parent=Phyra74332;rank=1 scaffold_7 . exon 395368 396528 . + . ID=Phyra74332.1;Parent=Phyra74332;constitutive=1;rank=1 scaffold_7 . repeat_region 401792 401873 . ? . description=trf scaffold_7 . repeat_region 408731 408750 . ? . description=trf scaffold_7 ensembl protein_coding_gene 402250 402756 . - . ID=Phyra74333;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000104;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 402250 402756 . - . ID=Phyra74333;Parent=Phyra74333;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 402250 402756 . - 0 ID=Phyra74333;Parent=Phyra74333;rank=1 scaffold_7 . exon 402250 402756 . - . ID=Phyra74333.1;Parent=Phyra74333;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 403766 404338 . - . ID=Phyra74334;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000105;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 403766 404338 . - . ID=Phyra74334;Parent=Phyra74334;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 403766 404338 . - 0 ID=Phyra74334;Parent=Phyra74334;rank=1 scaffold_7 . exon 403766 404338 . - . ID=Phyra74334.1;Parent=Phyra74334;constitutive=1;rank=1 scaffold_7 . repeat_region 410737 415480 . ? . description=dust scaffold_7 ensembl protein_coding_gene 416938 417556 . + . ID=Phyra74335;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000106;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 416938 417556 . + . ID=Phyra74335;Parent=Phyra74335;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 416938 417088 . + 0 ID=Phyra74335;Parent=Phyra74335;rank=1 scaffold_7 . exon 416938 417088 . + . ID=Phyra74335.1;Parent=Phyra74335;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 417138 417556 . + 0 ID=Phyra74335;Parent=Phyra74335;rank=2 scaffold_7 . exon 417138 417556 . + . ID=Phyra74335.2;Parent=Phyra74335;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . repeat_region 430161 430168 . ? . description=dust scaffold_7 . repeat_region 430539 430552 . ? . description=dust scaffold_7 . repeat_region 430641 430649 . ? . description=dust scaffold_7 . repeat_region 433592 433635 . ? . description=trf scaffold_7 . repeat_region 436982 436993 . ? . description=dust scaffold_7 ensembl protein_coding_gene 437303 438115 . + . ID=Phyra74336;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000107;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 437303 438115 . + . ID=Phyra74336;Parent=Phyra74336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 437303 438115 . + 0 ID=Phyra74336;Parent=Phyra74336;rank=1 scaffold_7 . exon 437303 438115 . + . ID=Phyra74336.1;Parent=Phyra74336;constitutive=1;rank=1 scaffold_7 . biological_region 440295 440298 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 439367 440527 . - . ID=Phyra74337;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000108;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 439367 440527 . - . ID=Phyra74337;Parent=Phyra74337;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 439367 440527 . - 0 ID=Phyra74337;Parent=Phyra74337;rank=1 scaffold_7 . exon 439367 440527 . - . ID=Phyra74337.1;Parent=Phyra74337;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 445474 445935 . + . ID=Phyra74338;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000109;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 445474 445935 . + . ID=Phyra74338;Parent=Phyra74338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 445474 445935 . + 0 ID=Phyra74338;Parent=Phyra74338;rank=1 scaffold_7 . exon 445474 445935 . + . ID=Phyra74338.1;Parent=Phyra74338;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 448193 449146 . - . ID=Phyra74339;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000110;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 448193 449146 . - . ID=Phyra74339;Parent=Phyra74339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 448193 448821 . - 0 ID=Phyra74339;Parent=Phyra74339;rank=2 scaffold_7 . exon 448193 448821 . - . ID=Phyra74339.2;Parent=Phyra74339;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 449032 449146 . - 0 ID=Phyra74339;Parent=Phyra74339;rank=1 scaffold_7 . repeat_region 449476 449486 . ? . description=dust scaffold_7 . repeat_region 449712 449720 . ? . description=dust scaffold_7 . repeat_region 449818 449855 . ? . description=trf scaffold_7 . repeat_region 456248 456256 . ? . description=dust scaffold_7 . exon 449032 449146 . - . ID=Phyra74339.1;Parent=Phyra74339;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 452999 453872 . - . ID=Phyra74340;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000111;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 452999 453872 . - . ID=Phyra74340;Parent=Phyra74340;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 452999 453405 . - 0 ID=Phyra74340;Parent=Phyra74340;rank=2 scaffold_7 . exon 452999 453405 . - . ID=Phyra74340.2;Parent=Phyra74340;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 453482 453872 . - 0 ID=Phyra74340;Parent=Phyra74340;rank=1 scaffold_7 . exon 453482 453872 . - . ID=Phyra74340.1;Parent=Phyra74340;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 457081 457653 . - . ID=Phyra74341;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000112;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 457081 457653 . - . ID=Phyra74341;Parent=Phyra74341;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 457081 457653 . - 0 ID=Phyra74341;Parent=Phyra74341;rank=1 scaffold_7 . exon 457081 457653 . - . ID=Phyra74341.1;Parent=Phyra74341;constitutive=1;rank=1 scaffold_7 . biological_region 464997 465001 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 459310 459945 . + . ID=Phyra74342;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000113;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 459310 459945 . + . ID=Phyra74342;Parent=Phyra74342;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 459310 459945 . + 0 ID=Phyra74342;Parent=Phyra74342;rank=1 scaffold_7 . exon 459310 459945 . + . ID=Phyra74342.1;Parent=Phyra74342;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 460820 461569 . - . ID=Phyra74343;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000114;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 460820 461569 . - . ID=Phyra74343;Parent=Phyra74343;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 460820 461569 . - 0 ID=Phyra74343;Parent=Phyra74343;rank=1 scaffold_7 . exon 460820 461569 . - . ID=Phyra74343.1;Parent=Phyra74343;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 462699 463082 . - . ID=Phyra74344;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000115;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 462699 463082 . - . ID=Phyra74344;Parent=Phyra74344;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 462699 463082 . - 0 ID=Phyra74344;Parent=Phyra74344;rank=1 scaffold_7 . exon 462699 463082 . - . ID=Phyra74344.1;Parent=Phyra74344;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 464448 465194 . + . ID=Phyra74345;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000116;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 464448 465194 . + . ID=Phyra74345;Parent=Phyra74345;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 464448 465194 . + 0 ID=Phyra74345;Parent=Phyra74345;rank=1 scaffold_7 . exon 464448 465194 . + . ID=Phyra74345.1;Parent=Phyra74345;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 465707 466366 . + . ID=Phyra74346;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000117;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 465707 466366 . + . ID=Phyra74346;Parent=Phyra74346;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 465707 466366 . + 0 ID=Phyra74346;Parent=Phyra74346;rank=1 scaffold_7 . exon 465707 466366 . + . ID=Phyra74346.1;Parent=Phyra74346;constitutive=1;rank=1 scaffold_7 . repeat_region 470024 470031 . ? . description=dust scaffold_7 . biological_region 485414 485418 0.999 + . logic_name=eponine scaffold_7 . biological_region 488338 488340 0.999 + . logic_name=eponine scaffold_7 . repeat_region 492564 492571 . ? . description=dust scaffold_7 ensembl protein_coding_gene 494898 495164 . - . ID=Phyra52452;biotype=protein_coding;external_name=gwEuk.7.36.1;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 494898 495164 . - . ID=Phyra52452;Parent=Phyra52452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 494898 495164 . - 0 ID=Phyra52452;Parent=Phyra52452;rank=1 scaffold_7 . exon 494898 495164 . - . ID=Phyra52452.1;Parent=Phyra52452;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 497181 498602 . - . ID=Phyra74347;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000118;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 497181 498602 . - . ID=Phyra74347;Parent=Phyra74347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 497181 497204 . - 0 ID=Phyra74347;Parent=Phyra74347;rank=3 scaffold_7 . exon 497181 497204 . - . ID=Phyra74347.3;Parent=Phyra74347;constitutive=1;rank=3 scaffold_7 . CDS 497275 497904 . - 0 ID=Phyra74347;Parent=Phyra74347;rank=2 scaffold_7 . exon 497275 497904 . - . ID=Phyra74347.2;Parent=Phyra74347;constitutive=1;rank=2 scaffold_7 . CDS 497949 498602 . - 0 ID=Phyra74347;Parent=Phyra74347;rank=1 scaffold_7 . exon 497949 498602 . - . ID=Phyra74347.1;Parent=Phyra74347;constitutive=1;rank=1 scaffold_7 . repeat_region 502920 502946 . ? . description=trf scaffold_7 . repeat_region 507395 507449 . ? . description=trf scaffold_7 ensembl protein_coding_gene 502761 503225 . + . ID=Phyra74348;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000119;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 502761 503225 . + . ID=Phyra74348;Parent=Phyra74348;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 502761 503225 . + 0 ID=Phyra74348;Parent=Phyra74348;rank=1 scaffold_7 . exon 502761 503225 . + . ID=Phyra74348.1;Parent=Phyra74348;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 504285 506480 . + . ID=Phyra74349;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000120;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 504285 506480 . + . ID=Phyra74349;Parent=Phyra74349;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 504285 506480 . + 0 ID=Phyra74349;Parent=Phyra74349;rank=1 scaffold_7 . exon 504285 506480 . + . ID=Phyra74349.1;Parent=Phyra74349;constitutive=1;rank=1 scaffold_7 . biological_region 510791 510794 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 510691 511539 . + . ID=Phyra74350;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000121;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 510691 511539 . + . ID=Phyra74350;Parent=Phyra74350;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 510691 511539 . + 0 ID=Phyra74350;Parent=Phyra74350;rank=1 scaffold_7 . exon 510691 511539 . + . ID=Phyra74350.1;Parent=Phyra74350;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 514649 522850 . + . ID=Phyra74351;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000122;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 514649 522850 . + . ID=Phyra74351;Parent=Phyra74351;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 514649 522850 . + 0 ID=Phyra74351;Parent=Phyra74351;rank=1 scaffold_7 . exon 514649 522850 . + . ID=Phyra74351.1;Parent=Phyra74351;constitutive=1;rank=1 scaffold_7 . repeat_region 523703 523735 . ? . description=trf scaffold_7 . repeat_region 524211 524286 . ? . description=trf scaffold_7 ensembl protein_coding_gene 526130 527074 . + . ID=Phyra74352;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000123;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 526130 527074 . + . ID=Phyra74352;Parent=Phyra74352;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 526130 527074 . + 0 ID=Phyra74352;Parent=Phyra74352;rank=1 scaffold_7 . exon 526130 527074 . + . ID=Phyra74352.1;Parent=Phyra74352;constitutive=1;rank=1 scaffold_7 . repeat_region 530345 530353 . ? . description=dust scaffold_7 . biological_region 532928 532932 0.999 + . logic_name=eponine scaffold_7 . repeat_region 535403 535530 . ? . description=dust scaffold_7 . repeat_region 536395 536444 . ? . description=dust scaffold_7 . repeat_region 546786 546813 . ? . description=trf scaffold_7 ensembl protein_coding_gene 545438 547820 . + . ID=Phyra74353;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000124;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 545438 547820 . + . ID=Phyra74353;Parent=Phyra74353;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 545438 546313 . + 0 ID=Phyra74353;Parent=Phyra74353;rank=1 scaffold_7 . exon 545438 546313 . + . ID=Phyra74353.1;Parent=Phyra74353;constitutive=1;rank=1 scaffold_7 . CDS 546761 546915 . + 0 ID=Phyra74353;Parent=Phyra74353;rank=2 scaffold_7 . exon 546761 546915 . + . ID=Phyra74353.2;Parent=Phyra74353;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 546950 547820 . + 0 ID=Phyra74353;Parent=Phyra74353;rank=3 scaffold_7 . exon 546950 547820 . + . ID=Phyra74353.3;Parent=Phyra74353;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 ensembl protein_coding_gene 548300 549879 . + . ID=Phyra74354;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000125;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 548300 549879 . + . ID=Phyra74354;Parent=Phyra74354;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 548300 548666 . + 0 ID=Phyra74354;Parent=Phyra74354;rank=1 scaffold_7 . exon 548300 548666 . + . ID=Phyra74354.1;Parent=Phyra74354;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 548725 549186 . + 0 ID=Phyra74354;Parent=Phyra74354;rank=2 scaffold_7 . CDS 549283 549449 . + 0 ID=Phyra74354;Parent=Phyra74354;rank=3 scaffold_7 . CDS 549601 549879 . + 0 ID=Phyra74354;Parent=Phyra74354;rank=4 scaffold_7 . biological_region 548783 548785 0.999 - . logic_name=eponine scaffold_7 . biological_region 548967 548970 0.999 - . logic_name=eponine scaffold_7 . repeat_region 549627 549643 . ? . description=dust scaffold_7 . biological_region 549821 549822 0.999 + . logic_name=eponine scaffold_7 . repeat_region 550028 550280 . ? . description=dust scaffold_7 . biological_region 552355 552359 0.999 - . logic_name=eponine scaffold_7 . biological_region 552457 552460 0.999 - . logic_name=eponine scaffold_7 . repeat_region 553333 553382 . ? . description=dust scaffold_7 . exon 548725 549186 . + . ID=Phyra74354.2;Parent=Phyra74354;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_7 . exon 549283 549449 . + . ID=Phyra74354.3;Parent=Phyra74354;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . exon 549601 549879 . + . ID=Phyra74354.4;Parent=Phyra74354;constitutive=1;rank=4 scaffold_7 ensembl protein_coding_gene 550927 552108 . - . ID=Phyra74355;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000126;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 550927 552108 . - . ID=Phyra74355;Parent=Phyra74355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 550927 551490 . - 0 ID=Phyra74355;Parent=Phyra74355;rank=2 scaffold_7 . exon 550927 551490 . - . ID=Phyra74355.2;Parent=Phyra74355;constitutive=1;rank=2 scaffold_7 . CDS 551593 552108 . - 0 ID=Phyra74355;Parent=Phyra74355;rank=1 scaffold_7 . exon 551593 552108 . - . ID=Phyra74355.1;Parent=Phyra74355;constitutive=1;rank=1 scaffold_7 . repeat_region 560972 561040 . ? . description=trf scaffold_7 . repeat_region 560973 561040 . ? . description=trf scaffold_7 . repeat_region 560974 561040 . ? . description=trf scaffold_7 . repeat_region 561112 561196 . ? . description=trf scaffold_7 . repeat_region 561304 561336 . ? . description=trf scaffold_7 . repeat_region 566169 566205 . ? . description=trf scaffold_7 ensembl protein_coding_gene 562748 563482 . + . ID=Phyra74356;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000127;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 562748 563482 . + . ID=Phyra74356;Parent=Phyra74356;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 562748 563482 . + 0 ID=Phyra74356;Parent=Phyra74356;rank=1 scaffold_7 . exon 562748 563482 . + . ID=Phyra74356.1;Parent=Phyra74356;constitutive=1;rank=1 scaffold_7 . repeat_region 573531 573580 . ? . description=dust scaffold_7 . repeat_region 574477 574526 . ? . description=dust scaffold_7 ensembl protein_coding_gene 577394 579103 . - . ID=Phyra71187;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_7000006;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 577394 579103 . - . ID=Phyra71187;Parent=Phyra71187;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 577394 578330 . - 0 ID=Phyra71187;Parent=Phyra71187;rank=2 scaffold_7 . exon 577394 578330 . - . ID=Phyra71187.2;Parent=Phyra71187;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 578403 579103 . - 0 ID=Phyra71187;Parent=Phyra71187;rank=1 scaffold_7 . repeat_region 578355 578383 . ? . description=trf scaffold_7 . biological_region 582028 582031 0.999 - . logic_name=eponine scaffold_7 . exon 578403 579103 . - . ID=Phyra71187.1;Parent=Phyra71187;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 584667 586679 . + . ID=Phyra71188;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_7000007;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 584667 586679 . + . ID=Phyra71188;Parent=Phyra71188;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 584667 586679 . + 0 ID=Phyra71188;Parent=Phyra71188;rank=1 scaffold_7 . exon 584667 586679 . + . ID=Phyra71188.1;Parent=Phyra71188;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 579244 582252 . - . ID=Phyra74358;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000129;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 579244 582252 . - . ID=Phyra74358;Parent=Phyra74358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 579244 579308 . - 0 ID=Phyra74358;Parent=Phyra74358;rank=3 scaffold_7 . exon 579244 579308 . - . ID=Phyra74358.3;Parent=Phyra74358;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 579399 580516 . - 0 ID=Phyra74358;Parent=Phyra74358;rank=2 scaffold_7 . exon 579399 580516 . - . ID=Phyra74358.2;Parent=Phyra74358;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 580591 582252 . - 0 ID=Phyra74358;Parent=Phyra74358;rank=1 scaffold_7 . exon 580591 582252 . - . ID=Phyra74358.1;Parent=Phyra74358;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 596920 597402 . + . ID=Phyra52466;biotype=protein_coding;external_name=gwEuk.7.50.1;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 596920 597402 . + . ID=Phyra52466;Parent=Phyra52466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 596920 597402 . + 0 ID=Phyra52466;Parent=Phyra52466;rank=1 scaffold_7 . exon 596920 597402 . + . ID=Phyra52466.1;Parent=Phyra52466;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 594287 596197 . + . ID=Phyra74360;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000131;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 594287 596197 . + . ID=Phyra74360;Parent=Phyra74360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 594287 596197 . + 0 ID=Phyra74360;Parent=Phyra74360;rank=1 scaffold_7 . exon 594287 596197 . + . ID=Phyra74360.1;Parent=Phyra74360;constitutive=1;rank=1 scaffold_7 . biological_region 599484 599490 0.999 + . logic_name=eponine scaffold_7 . biological_region 604776 604781 0.999 - . logic_name=eponine scaffold_7 . biological_region 604998 604999 0.999 - . logic_name=eponine scaffold_7 . biological_region 607958 607959 0.999 - . logic_name=eponine scaffold_7 . biological_region 608011 608014 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 598538 599599 . - . ID=Phyra71190;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_7000009;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 598538 599599 . - . ID=Phyra71190;Parent=Phyra71190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 598538 599599 . - 0 ID=Phyra71190;Parent=Phyra71190;rank=1 scaffold_7 . exon 598538 599599 . - . ID=Phyra71190.1;Parent=Phyra71190;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 599933 600910 . - . ID=Phyra74363;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000134;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 599933 600910 . - . ID=Phyra74363;Parent=Phyra74363;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 599933 599947 . - 0 ID=Phyra74363;Parent=Phyra74363;rank=3 scaffold_7 . exon 599933 599947 . - . ID=Phyra74363.3;Parent=Phyra74363;constitutive=1;rank=3 scaffold_7 . CDS 600275 600725 . - 0 ID=Phyra74363;Parent=Phyra74363;rank=2 scaffold_7 . exon 600275 600725 . - . ID=Phyra74363.2;Parent=Phyra74363;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 600879 600910 . - 0 ID=Phyra74363;Parent=Phyra74363;rank=1 scaffold_7 . exon 600879 600910 . - . ID=Phyra74363.1;Parent=Phyra74363;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 601768 603609 . - . ID=Phyra74364;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000135;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 601768 603609 . - . ID=Phyra74364;Parent=Phyra74364;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 601768 603609 . - 0 ID=Phyra74364;Parent=Phyra74364;rank=1 scaffold_7 . exon 601768 603609 . - . ID=Phyra74364.1;Parent=Phyra74364;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 604173 605849 . + . ID=Phyra74365;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000136;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 604173 605849 . + . ID=Phyra74365;Parent=Phyra74365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 604173 605849 . + 0 ID=Phyra74365;Parent=Phyra74365;rank=1 scaffold_7 . exon 604173 605849 . + . ID=Phyra74365.1;Parent=Phyra74365;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 606185 608224 . + . ID=Phyra74366;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000137;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 606185 608224 . + . ID=Phyra74366;Parent=Phyra74366;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 606185 606193 . + 0 ID=Phyra74366;Parent=Phyra74366;rank=1 scaffold_7 . exon 606185 606193 . + . ID=Phyra74366.1;Parent=Phyra74366;constitutive=1;rank=1 scaffold_7 . CDS 606260 606814 . + 0 ID=Phyra74366;Parent=Phyra74366;rank=2 scaffold_7 . exon 606260 606814 . + . ID=Phyra74366.2;Parent=Phyra74366;constitutive=1;rank=2 scaffold_7 . CDS 606851 607199 . + 0 ID=Phyra74366;Parent=Phyra74366;rank=3 scaffold_7 . exon 606851 607199 . + . ID=Phyra74366.3;Parent=Phyra74366;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_7 . CDS 607647 607957 . + 0 ID=Phyra74366;Parent=Phyra74366;rank=4 scaffold_7 . exon 607647 607957 . + . ID=Phyra74366.4;Parent=Phyra74366;constitutive=1;ensembl_phase=1;rank=4 scaffold_7 . CDS 608039 608080 . + 0 ID=Phyra74366;Parent=Phyra74366;rank=5 scaffold_7 . exon 608039 608080 . + . ID=Phyra74366.5;Parent=Phyra74366;constitutive=1;rank=5 scaffold_7 . CDS 608108 608224 . + 0 ID=Phyra74366;Parent=Phyra74366;rank=6 scaffold_7 . exon 608108 608224 . + . ID=Phyra74366.6;Parent=Phyra74366;constitutive=1;rank=6 scaffold_7 . repeat_region 612756 612792 . ? . description=trf scaffold_7 . repeat_region 612969 613023 . ? . description=trf scaffold_7 . repeat_region 617562 617569 . ? . description=dust scaffold_7 . repeat_region 617644 617654 . ? . description=dust scaffold_7 ensembl protein_coding_gene 608660 609802 . + . ID=Phyra74367;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000138;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 608660 609802 . + . ID=Phyra74367;Parent=Phyra74367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 608660 609802 . + 0 ID=Phyra74367;Parent=Phyra74367;rank=1 scaffold_7 . exon 608660 609802 . + . ID=Phyra74367.1;Parent=Phyra74367;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 611559 615300 . + . ID=Phyra74368;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000139;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 611559 615300 . + . ID=Phyra74368;Parent=Phyra74368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 611559 611567 . + 0 ID=Phyra74368;Parent=Phyra74368;rank=1 scaffold_7 . exon 611559 611567 . + . ID=Phyra74368.1;Parent=Phyra74368;constitutive=1;rank=1 scaffold_7 . CDS 611634 612188 . + 0 ID=Phyra74368;Parent=Phyra74368;rank=2 scaffold_7 . exon 611634 612188 . + . ID=Phyra74368.2;Parent=Phyra74368;constitutive=1;rank=2 scaffold_7 . CDS 612225 612619 . + 0 ID=Phyra74368;Parent=Phyra74368;rank=3 scaffold_7 . exon 612225 612619 . + . ID=Phyra74368.3;Parent=Phyra74368;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_7 . CDS 612724 612763 . + 0 ID=Phyra74368;Parent=Phyra74368;rank=4 scaffold_7 . exon 612724 612763 . + . ID=Phyra74368.4;Parent=Phyra74368;constitutive=1;ensembl_phase=2;rank=4 scaffold_7 . CDS 613077 614324 . + 0 ID=Phyra74368;Parent=Phyra74368;rank=5 scaffold_7 . exon 613077 614324 . + . ID=Phyra74368.5;Parent=Phyra74368;constitutive=1;rank=5 scaffold_7 . CDS 615004 615300 . + 0 ID=Phyra74368;Parent=Phyra74368;rank=6 scaffold_7 . exon 615004 615300 . + . ID=Phyra74368.6;Parent=Phyra74368;constitutive=1;rank=6 scaffold_7 ensembl protein_coding_gene 617770 618552 . - . ID=Phyra74369;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000140;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 617770 618552 . - . ID=Phyra74369;Parent=Phyra74369;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 617770 618552 . - 0 ID=Phyra74369;Parent=Phyra74369;rank=1 scaffold_7 . exon 617770 618552 . - . ID=Phyra74369.1;Parent=Phyra74369;constitutive=1;rank=1 scaffold_7 . repeat_region 628871 628882 . ? . description=dust scaffold_7 . repeat_region 632433 632441 . ? . description=dust scaffold_7 . repeat_region 637887 637900 . ? . description=dust scaffold_7 . repeat_region 638082 638106 . ? . description=trf scaffold_7 ensembl protein_coding_gene 635395 637314 . - . ID=Phyra74370;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000141;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 635395 637314 . - . ID=Phyra74370;Parent=Phyra74370;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 635395 636875 . - 0 ID=Phyra74370;Parent=Phyra74370;rank=2 scaffold_7 . exon 635395 636875 . - . ID=Phyra74370.2;Parent=Phyra74370;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 637281 637314 . - 0 ID=Phyra74370;Parent=Phyra74370;rank=1 scaffold_7 . exon 637281 637314 . - . ID=Phyra74370.1;Parent=Phyra74370;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 638530 640062 . - . ID=Phyra74371;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000142;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 638530 640062 . - . ID=Phyra74371;Parent=Phyra74371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 638530 640062 . - 0 ID=Phyra74371;Parent=Phyra74371;rank=1 scaffold_7 . exon 638530 640062 . - . ID=Phyra74371.1;Parent=Phyra74371;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 641674 643161 . - . ID=Phyra74372;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000143;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 641674 643161 . - . ID=Phyra74372;Parent=Phyra74372;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 641674 643161 . - 0 ID=Phyra74372;Parent=Phyra74372;rank=1 scaffold_7 . exon 641674 643161 . - . ID=Phyra74372.1;Parent=Phyra74372;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 645412 647067 . - . ID=Phyra74373;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000144;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 645412 647067 . - . ID=Phyra74373;Parent=Phyra74373;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 645412 646301 . - 0 ID=Phyra74373;Parent=Phyra74373;rank=2 scaffold_7 . exon 645412 646301 . - . ID=Phyra74373.2;Parent=Phyra74373;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 646371 647067 . - 0 ID=Phyra74373;Parent=Phyra74373;rank=1 scaffold_7 . exon 646371 647067 . - . ID=Phyra74373.1;Parent=Phyra74373;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 647299 648971 . - . ID=Phyra74374;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000145;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 647299 648971 . - . ID=Phyra74374;Parent=Phyra74374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 647299 648221 . - 0 ID=Phyra74374;Parent=Phyra74374;rank=2 scaffold_7 . exon 647299 648221 . - . ID=Phyra74374.2;Parent=Phyra74374;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 648281 648971 . - 0 ID=Phyra74374;Parent=Phyra74374;rank=1 scaffold_7 . biological_region 649933 649936 0.999 - . logic_name=eponine scaffold_7 . repeat_region 650423 650463 . ? . description=trf scaffold_7 . repeat_region 651744 651882 . ? . description=trf scaffold_7 . repeat_region 651788 651836 . ? . description=trf scaffold_7 . repeat_region 651812 652085 . ? . description=trf scaffold_7 . biological_region 652406 652407 0.999 - . logic_name=eponine scaffold_7 . biological_region 652587 652588 0.999 + . logic_name=eponine scaffold_7 . biological_region 652661 652663 0.999 - . logic_name=eponine scaffold_7 . biological_region 654004 654008 0.999 + . logic_name=eponine scaffold_7 . biological_region 655267 655269 0.999 + . logic_name=eponine scaffold_7 . biological_region 657608 657610 0.999 + . logic_name=eponine scaffold_7 . biological_region 657934 657935 0.999 + . logic_name=eponine scaffold_7 . exon 648281 648971 . - . ID=Phyra74374.1;Parent=Phyra74374;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 649835 650191 . + . ID=Phyra74375;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000146;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 649835 650191 . + . ID=Phyra74375;Parent=Phyra74375;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 649835 650191 . + 0 ID=Phyra74375;Parent=Phyra74375;rank=1 scaffold_7 . exon 649835 650191 . + . ID=Phyra74375.1;Parent=Phyra74375;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 650319 652473 . - . ID=Phyra74376;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000147;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 650319 652473 . - . ID=Phyra74376;Parent=Phyra74376;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 650319 651495 . - 0 ID=Phyra74376;Parent=Phyra74376;rank=2 scaffold_7 . exon 650319 651495 . - . ID=Phyra74376.2;Parent=Phyra74376;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 651536 652473 . - 0 ID=Phyra74376;Parent=Phyra74376;rank=1 scaffold_7 . exon 651536 652473 . - . ID=Phyra74376.1;Parent=Phyra74376;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 653628 658059 . - . ID=Phyra74377;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000148;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 653628 658059 . - . ID=Phyra74377;Parent=Phyra74377;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 653628 656676 . - 0 ID=Phyra74377;Parent=Phyra74377;rank=3 scaffold_7 . exon 653628 656676 . - . ID=Phyra74377.3;Parent=Phyra74377;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 656905 657741 . - 0 ID=Phyra74377;Parent=Phyra74377;rank=2 scaffold_7 . exon 656905 657741 . - . ID=Phyra74377.2;Parent=Phyra74377;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_7 . CDS 657854 658059 . - 0 ID=Phyra74377;Parent=Phyra74377;rank=1 scaffold_7 . exon 657854 658059 . - . ID=Phyra74377.1;Parent=Phyra74377;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . repeat_region 658601 658608 . ? . description=dust scaffold_7 . repeat_region 666157 666206 . ? . description=dust scaffold_7 ensembl protein_coding_gene 664953 665900 . - . ID=Phyra71191;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_7000010;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 664953 665900 . - . ID=Phyra71191;Parent=Phyra71191;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 664953 665900 . - 0 ID=Phyra71191;Parent=Phyra71191;rank=1 scaffold_7 . exon 664953 665900 . - . ID=Phyra71191.1;Parent=Phyra71191;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 660337 661347 . - . ID=Phyra74378;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000149;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 660337 661347 . - . ID=Phyra74378;Parent=Phyra74378;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 660337 661347 . - 0 ID=Phyra74378;Parent=Phyra74378;rank=1 scaffold_7 . exon 660337 661347 . - . ID=Phyra74378.1;Parent=Phyra74378;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 666474 667663 . + . ID=Phyra74380;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000151;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 666474 667663 . + . ID=Phyra74380;Parent=Phyra74380;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 666474 666655 . + 0 ID=Phyra74380;Parent=Phyra74380;rank=1 scaffold_7 . exon 666474 666655 . + . ID=Phyra74380.1;Parent=Phyra74380;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 666720 666829 . + 0 ID=Phyra74380;Parent=Phyra74380;rank=2 scaffold_7 . exon 666720 666829 . + . ID=Phyra74380.2;Parent=Phyra74380;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 666906 667663 . + 0 ID=Phyra74380;Parent=Phyra74380;rank=3 scaffold_7 . exon 666906 667663 . + . ID=Phyra74380.3;Parent=Phyra74380;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 ensembl protein_coding_gene 667961 668885 . + . ID=Phyra74381;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000152;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 667961 668885 . + . ID=Phyra74381;Parent=Phyra74381;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 667961 668000 . + 0 ID=Phyra74381;Parent=Phyra74381;rank=1 scaffold_7 . exon 667961 668000 . + . ID=Phyra74381.1;Parent=Phyra74381;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 668157 668481 . + 0 ID=Phyra74381;Parent=Phyra74381;rank=2 scaffold_7 . CDS 668756 668820 . + 0 ID=Phyra74381;Parent=Phyra74381;rank=3 scaffold_7 . CDS 668857 668885 . + 0 ID=Phyra74381;Parent=Phyra74381;rank=4 scaffold_7 . repeat_region 674882 674967 . ? . description=trf scaffold_7 . biological_region 676367 676368 0.999 + . logic_name=eponine scaffold_7 . exon 668157 668481 . + . ID=Phyra74381.2;Parent=Phyra74381;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_7 . exon 668756 668820 . + . ID=Phyra74381.3;Parent=Phyra74381;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_7 . exon 668857 668885 . + . ID=Phyra74381.4;Parent=Phyra74381;constitutive=1;ensembl_phase=1;rank=4 scaffold_7 ensembl protein_coding_gene 673898 675149 . + . ID=Phyra74382;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000153;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 673898 675149 . + . ID=Phyra74382;Parent=Phyra74382;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 673898 674692 . + 0 ID=Phyra74382;Parent=Phyra74382;rank=1 scaffold_7 . exon 673898 674692 . + . ID=Phyra74382.1;Parent=Phyra74382;constitutive=1;rank=1 scaffold_7 . CDS 674781 675003 . + 0 ID=Phyra74382;Parent=Phyra74382;rank=2 scaffold_7 . exon 674781 675003 . + . ID=Phyra74382.2;Parent=Phyra74382;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_7 . CDS 675079 675149 . + 0 ID=Phyra74382;Parent=Phyra74382;rank=3 scaffold_7 . exon 675079 675149 . + . ID=Phyra74382.3;Parent=Phyra74382;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 ensembl protein_coding_gene 676744 677574 . + . ID=Phyra74383;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000154;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 676744 677574 . + . ID=Phyra74383;Parent=Phyra74383;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 676744 677574 . + 0 ID=Phyra74383;Parent=Phyra74383;rank=1 scaffold_7 . exon 676744 677574 . + . ID=Phyra74383.1;Parent=Phyra74383;constitutive=1;rank=1 scaffold_7 . repeat_region 680775 680824 . ? . description=dust scaffold_7 ensembl protein_coding_gene 680037 680420 . + . ID=Phyra52497;biotype=protein_coding;external_name=gwEuk.7.81.1;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 680037 680420 . + . ID=Phyra52497;Parent=Phyra52497;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 680037 680420 . + 0 ID=Phyra52497;Parent=Phyra52497;rank=1 scaffold_7 . exon 680037 680420 . + . ID=Phyra52497.1;Parent=Phyra52497;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 679242 679731 . + . ID=Phyra71192;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_7000011;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 679242 679731 . + . ID=Phyra71192;Parent=Phyra71192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 679242 679590 . + 0 ID=Phyra71192;Parent=Phyra71192;rank=1 scaffold_7 . exon 679242 679590 . + . ID=Phyra71192.1;Parent=Phyra71192;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 679706 679731 . + 0 ID=Phyra71192;Parent=Phyra71192;rank=2 scaffold_7 . exon 679706 679731 . + . ID=Phyra71192.2;Parent=Phyra71192;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 ensembl protein_coding_gene 686545 689790 . + . ID=Phyra74385;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000156;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 686545 689790 . + . ID=Phyra74385;Parent=Phyra74385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 686545 686918 . + 0 ID=Phyra74385;Parent=Phyra74385;rank=1 scaffold_7 . exon 686545 686918 . + . ID=Phyra74385.1;Parent=Phyra74385;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 687177 689790 . + 0 ID=Phyra74385;Parent=Phyra74385;rank=2 scaffold_7 . exon 687177 689790 . + . ID=Phyra74385.2;Parent=Phyra74385;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . biological_region 688930 688936 0.999 - . logic_name=eponine scaffold_7 . biological_region 689112 689113 0.999 + . logic_name=eponine scaffold_7 . repeat_region 690823 690854 . ? . description=trf scaffold_7 . biological_region 691391 691394 0.999 + . logic_name=eponine scaffold_7 . biological_region 691396 691398 0.999 - . logic_name=eponine scaffold_7 . biological_region 692287 692292 0.999 + . logic_name=eponine scaffold_7 . biological_region 693992 693993 0.999 + . logic_name=eponine scaffold_7 . repeat_region 694316 694402 . ? . description=trf scaffold_7 ensembl protein_coding_gene 693515 694228 . - . ID=Phyra74386;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000157;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 693515 694228 . - . ID=Phyra74386;Parent=Phyra74386;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 693515 694228 . - 0 ID=Phyra74386;Parent=Phyra74386;rank=1 scaffold_7 . exon 693515 694228 . - . ID=Phyra74386.1;Parent=Phyra74386;constitutive=1;rank=1 scaffold_7 . repeat_region 702043 702063 . ? . description=dust scaffold_7 . repeat_region 702452 702466 . ? . description=dust scaffold_7 . repeat_region 707549 713408 . ? . description=dust scaffold_7 ensembl protein_coding_gene 702923 704953 . + . ID=Phyra74387;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000158;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 702923 704953 . + . ID=Phyra74387;Parent=Phyra74387;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 702923 704953 . + 0 ID=Phyra74387;Parent=Phyra74387;rank=1 scaffold_7 . exon 702923 704953 . + . ID=Phyra74387.1;Parent=Phyra74387;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 706074 707446 . + . ID=Phyra74388;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000159;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 706074 707446 . + . ID=Phyra74388;Parent=Phyra74388;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 706074 706213 . + 0 ID=Phyra74388;Parent=Phyra74388;rank=1 scaffold_7 . exon 706074 706213 . + . ID=Phyra74388.1;Parent=Phyra74388;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 706474 707048 . + 0 ID=Phyra74388;Parent=Phyra74388;rank=2 scaffold_7 . exon 706474 707048 . + . ID=Phyra74388.2;Parent=Phyra74388;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 707349 707446 . + 0 ID=Phyra74388;Parent=Phyra74388;rank=3 scaffold_7 . exon 707349 707446 . + . ID=Phyra74388.3;Parent=Phyra74388;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . biological_region 714190 714190 0.999 - . logic_name=eponine scaffold_7 . biological_region 714463 714467 0.999 + . logic_name=eponine scaffold_7 . biological_region 714515 714518 0.999 + . logic_name=eponine scaffold_7 . biological_region 714542 714546 0.999 - . logic_name=eponine scaffold_7 . biological_region 714617 714621 0.999 + . logic_name=eponine scaffold_7 . biological_region 717795 717803 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 713734 717487 . + . ID=Phyra74389;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000160;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 713734 717487 . + . ID=Phyra74389;Parent=Phyra74389;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 713734 713811 . + 0 ID=Phyra74389;Parent=Phyra74389;rank=1 scaffold_7 . exon 713734 713811 . + . ID=Phyra74389.1;Parent=Phyra74389;constitutive=1;rank=1 scaffold_7 . CDS 714013 714367 . + 0 ID=Phyra74389;Parent=Phyra74389;rank=2 scaffold_7 . exon 714013 714367 . + . ID=Phyra74389.2;Parent=Phyra74389;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_7 . CDS 714529 715520 . + 0 ID=Phyra74389;Parent=Phyra74389;rank=3 scaffold_7 . exon 714529 715520 . + . ID=Phyra74389.3;Parent=Phyra74389;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 715651 715818 . + 0 ID=Phyra74389;Parent=Phyra74389;rank=4 scaffold_7 . exon 715651 715818 . + . ID=Phyra74389.4;Parent=Phyra74389;constitutive=1;rank=4 scaffold_7 . CDS 716122 717160 . + 0 ID=Phyra74389;Parent=Phyra74389;rank=5 scaffold_7 . exon 716122 717160 . + . ID=Phyra74389.5;Parent=Phyra74389;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_7 . CDS 717299 717389 . + 0 ID=Phyra74389;Parent=Phyra74389;rank=6 scaffold_7 . exon 717299 717389 . + . ID=Phyra74389.6;Parent=Phyra74389;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_7 . CDS 717451 717487 . + 0 ID=Phyra74389;Parent=Phyra74389;rank=7 scaffold_7 . exon 717451 717487 . + . ID=Phyra74389.7;Parent=Phyra74389;constitutive=1;ensembl_phase=2;rank=7 scaffold_7 ensembl protein_coding_gene 717740 719343 . - . ID=Phyra74390;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000161;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 717740 719343 . - . ID=Phyra74390;Parent=Phyra74390;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 717740 717937 . - 0 ID=Phyra74390;Parent=Phyra74390;rank=4 scaffold_7 . exon 717740 717937 . - . ID=Phyra74390.4;Parent=Phyra74390;constitutive=1;rank=4 scaffold_7 . CDS 718006 718133 . - 0 ID=Phyra74390;Parent=Phyra74390;rank=3 scaffold_7 . CDS 718170 718367 . - 0 ID=Phyra74390;Parent=Phyra74390;rank=2 scaffold_7 . CDS 718464 719343 . - 0 ID=Phyra74390;Parent=Phyra74390;rank=1 scaffold_7 . repeat_region 717972 717991 . ? . description=dust scaffold_7 . repeat_region 725597 725608 . ? . description=dust scaffold_7 . repeat_region 726873 726885 . ? . description=dust scaffold_7 . exon 718006 718133 . - . ID=Phyra74390.3;Parent=Phyra74390;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . exon 718170 718367 . - . ID=Phyra74390.2;Parent=Phyra74390;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_7 . exon 718464 719343 . - . ID=Phyra74390.1;Parent=Phyra74390;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . biological_region 734281 734284 0.999 - . logic_name=eponine scaffold_7 . biological_region 734513 734517 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 734208 735119 . + . ID=Phyra71193;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_7000012;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 734208 735119 . + . ID=Phyra71193;Parent=Phyra71193;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 734208 735119 . + 0 ID=Phyra71193;Parent=Phyra71193;rank=1 scaffold_7 . exon 734208 735119 . + . ID=Phyra71193.1;Parent=Phyra71193;constitutive=1;rank=1 scaffold_7 . repeat_region 740230 740237 . ? . description=dust scaffold_7 ensembl protein_coding_gene 738795 739826 . + . ID=Phyra74392;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000163;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 738795 739826 . + . ID=Phyra74392;Parent=Phyra74392;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 738795 739826 . + 0 ID=Phyra74392;Parent=Phyra74392;rank=1 scaffold_7 . exon 738795 739826 . + . ID=Phyra74392.1;Parent=Phyra74392;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 743428 743970 . + . ID=Phyra74393;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000164;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 743428 743970 . + . ID=Phyra74393;Parent=Phyra74393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 743428 743970 . + 0 ID=Phyra74393;Parent=Phyra74393;rank=1 scaffold_7 . exon 743428 743970 . + . ID=Phyra74393.1;Parent=Phyra74393;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 752791 754197 . + . ID=Phyra71194;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_7000013;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 752791 754197 . + . ID=Phyra71194;Parent=Phyra71194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 752791 754197 . + 0 ID=Phyra71194;Parent=Phyra71194;rank=1 scaffold_7 . exon 752791 754197 . + . ID=Phyra71194.1;Parent=Phyra71194;constitutive=1;rank=1 scaffold_7 . repeat_region 760541 762880 . ? . description=dust scaffold_7 . repeat_region 765413 765467 . ? . description=trf scaffold_7 . repeat_region 765804 765856 . ? . description=trf scaffold_7 . repeat_region 766597 766607 . ? . description=dust scaffold_7 . biological_region 770565 770572 0.999 - . logic_name=eponine scaffold_7 . biological_region 770620 770625 0.999 + . logic_name=eponine scaffold_7 . biological_region 773449 773453 0.999 - . logic_name=eponine scaffold_7 . biological_region 774417 774419 0.999 + . logic_name=eponine scaffold_7 . biological_region 775685 775685 0.999 + . logic_name=eponine scaffold_7 . biological_region 775765 775768 0.999 - . logic_name=eponine scaffold_7 . biological_region 775804 775810 0.999 - . logic_name=eponine scaffold_7 . biological_region 776286 776287 0.999 - . logic_name=eponine scaffold_7 . biological_region 777257 777266 0.999 + . logic_name=eponine scaffold_7 . biological_region 777432 777438 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 768035 769045 . + . ID=Phyra74395;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000166;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 768035 769045 . + . ID=Phyra74395;Parent=Phyra74395;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 768035 769045 . + 0 ID=Phyra74395;Parent=Phyra74395;rank=1 scaffold_7 . exon 768035 769045 . + . ID=Phyra74395.1;Parent=Phyra74395;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 770049 770881 . - . ID=Phyra74396;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000167;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 770049 770881 . - . ID=Phyra74396;Parent=Phyra74396;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 770049 770525 . - 0 ID=Phyra74396;Parent=Phyra74396;rank=3 scaffold_7 . exon 770049 770525 . - . ID=Phyra74396.3;Parent=Phyra74396;constitutive=1;rank=3 scaffold_7 . CDS 770678 770691 . - 0 ID=Phyra74396;Parent=Phyra74396;rank=2 scaffold_7 . exon 770678 770691 . - . ID=Phyra74396.2;Parent=Phyra74396;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 770728 770881 . - 0 ID=Phyra74396;Parent=Phyra74396;rank=1 scaffold_7 . exon 770728 770881 . - . ID=Phyra74396.1;Parent=Phyra74396;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 771185 776017 . + . ID=Phyra74397;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000168;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 771185 776017 . + . ID=Phyra74397;Parent=Phyra74397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 771185 773239 . + 0 ID=Phyra74397;Parent=Phyra74397;rank=1 scaffold_7 . exon 771185 773239 . + . ID=Phyra74397.1;Parent=Phyra74397;constitutive=1;rank=1 scaffold_7 . CDS 773985 774047 . + 0 ID=Phyra74397;Parent=Phyra74397;rank=2 scaffold_7 . exon 773985 774047 . + . ID=Phyra74397.2;Parent=Phyra74397;constitutive=1;rank=2 scaffold_7 . CDS 774068 776017 . + 0 ID=Phyra74397;Parent=Phyra74397;rank=3 scaffold_7 . exon 774068 776017 . + . ID=Phyra74397.3;Parent=Phyra74397;constitutive=1;rank=3 scaffold_7 ensembl protein_coding_gene 777153 779117 . + . ID=Phyra74398;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000169;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 777153 779117 . + . ID=Phyra74398;Parent=Phyra74398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 777153 779117 . + 0 ID=Phyra74398;Parent=Phyra74398;rank=1 scaffold_7 . exon 777153 779117 . + . ID=Phyra74398.1;Parent=Phyra74398;constitutive=1;rank=1 scaffold_7 . repeat_region 777826 777864 . ? . description=trf scaffold_7 . repeat_region 778908 778986 . ? . description=trf scaffold_7 . repeat_region 782178 784941 . ? . description=dust scaffold_7 . repeat_region 787185 787195 . ? . description=dust scaffold_7 ensembl protein_coding_gene 780115 785452 . + . ID=Phyra74399;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_7000170;logic_name=jgi_phyra1 scaffold_7 ensembl transcript 780115 785452 . + . ID=Phyra74399;Parent=Phyra74399;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_7 . CDS 780115 780160 . + 0 ID=Phyra74399;Parent=Phyra74399;rank=1 scaffold_7 . exon 780115 780160 . + . ID=Phyra74399.1;Parent=Phyra74399;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 780217 780282 . + 0 ID=Phyra74399;Parent=Phyra74399;rank=2 scaffold_7 . exon 780217 780282 . + . ID=Phyra74399.2;Parent=Phyra74399;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 780343 782165 . + 0 ID=Phyra74399;Parent=Phyra74399;rank=3 scaffold_7 . exon 780343 782165 . + . ID=Phyra74399.3;Parent=Phyra74399;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 785264 785452 . + 0 ID=Phyra74399;Parent=Phyra74399;rank=4 scaffold_7 . exon 785264 785452 . + . ID=Phyra74399.4;Parent=Phyra74399;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_6 1 810017 scaffold_6 . repeat_region 1540 17665 . ? . description=dust scaffold_6 ensembl protein_coding_gene 29 1152 . - . ID=Phyra74018;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000001;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 29 1152 . - . ID=Phyra74018;Parent=Phyra74018;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 29 1152 . - 0 ID=Phyra74018;Parent=Phyra74018;rank=1 scaffold_6 . exon 29 1152 . - . ID=Phyra74018.1;Parent=Phyra74018;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . biological_region 18587 18590 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 18459 20723 . + . ID=Phyra74019;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000002;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 18459 20723 . + . ID=Phyra74019;Parent=Phyra74019;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 18459 18692 . + 0 ID=Phyra74019;Parent=Phyra74019;rank=1 scaffold_6 . exon 18459 18692 . + . ID=Phyra74019.1;Parent=Phyra74019;constitutive=1;rank=1 scaffold_6 . CDS 18723 20304 . + 0 ID=Phyra74019;Parent=Phyra74019;rank=2 scaffold_6 . exon 18723 20304 . + . ID=Phyra74019.2;Parent=Phyra74019;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 20683 20723 . + 0 ID=Phyra74019;Parent=Phyra74019;rank=3 scaffold_6 . repeat_region 21524 21578 . ? . description=trf scaffold_6 . repeat_region 21524 21578 . ? . description=dust scaffold_6 . exon 20683 20723 . + . ID=Phyra74019.3;Parent=Phyra74019;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 ensembl protein_coding_gene 26132 28608 . + . ID=Phyra74020;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000003;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 26132 28608 . + . ID=Phyra74020;Parent=Phyra74020;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 26132 27318 . + 0 ID=Phyra74020;Parent=Phyra74020;rank=1 scaffold_6 . exon 26132 27318 . + . ID=Phyra74020.1;Parent=Phyra74020;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 27550 27919 . + 0 ID=Phyra74020;Parent=Phyra74020;rank=2 scaffold_6 . exon 27550 27919 . + . ID=Phyra74020.2;Parent=Phyra74020;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 28113 28172 . + 0 ID=Phyra74020;Parent=Phyra74020;rank=3 scaffold_6 . exon 28113 28172 . + . ID=Phyra74020.3;Parent=Phyra74020;constitutive=1;rank=3 scaffold_6 . CDS 28230 28343 . + 0 ID=Phyra74020;Parent=Phyra74020;rank=4 scaffold_6 . exon 28230 28343 . + . ID=Phyra74020.4;Parent=Phyra74020;constitutive=1;rank=4 scaffold_6 . CDS 28597 28608 . + 0 ID=Phyra74020;Parent=Phyra74020;rank=5 scaffold_6 . exon 28597 28608 . + . ID=Phyra74020.5;Parent=Phyra74020;constitutive=1;rank=5 scaffold_6 ensembl protein_coding_gene 28960 30597 . - . ID=Phyra93781;biotype=protein_coding;external_name=C_scaffold_6000003;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 28960 30597 . - . ID=Phyra93781;Parent=Phyra93781;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 28960 30597 . - 0 ID=Phyra93781;Parent=Phyra93781;rank=1 scaffold_6 . exon 28960 30597 . - . ID=Phyra93781.1;Parent=Phyra93781;constitutive=1;rank=1 scaffold_6 . biological_region 30590 30595 0.999 - . logic_name=eponine scaffold_6 . biological_region 30776 30783 0.999 + . logic_name=eponine scaffold_6 . biological_region 31376 31378 0.999 - . logic_name=eponine scaffold_6 . biological_region 32489 32491 0.999 + . logic_name=eponine scaffold_6 . biological_region 34048 34051 0.999 + . logic_name=eponine scaffold_6 . biological_region 34073 34078 0.999 + . logic_name=eponine scaffold_6 . biological_region 34142 34146 0.999 - . logic_name=eponine scaffold_6 . biological_region 34154 34156 0.999 + . logic_name=eponine scaffold_6 . biological_region 34197 34199 0.999 - . logic_name=eponine scaffold_6 . biological_region 35126 35130 0.999 - . logic_name=eponine scaffold_6 . biological_region 35448 35451 0.999 + . logic_name=eponine scaffold_6 . biological_region 37025 37032 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 34384 34704 . - . ID=Phyra51446;biotype=protein_coding;external_name=gwEuk.6.138.1;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 34384 34704 . - . ID=Phyra51446;Parent=Phyra51446;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 34384 34704 . - 0 ID=Phyra51446;Parent=Phyra51446;rank=1 scaffold_6 . exon 34384 34704 . - . ID=Phyra51446.1;Parent=Phyra51446;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 30784 32005 . + . ID=Phyra74023;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000006;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 30784 32005 . + . ID=Phyra74023;Parent=Phyra74023;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 30784 31145 . + 0 ID=Phyra74023;Parent=Phyra74023;rank=1 scaffold_6 . exon 30784 31145 . + . ID=Phyra74023.1;Parent=Phyra74023;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 31345 32005 . + 0 ID=Phyra74023;Parent=Phyra74023;rank=2 scaffold_6 . exon 31345 32005 . + . ID=Phyra74023.2;Parent=Phyra74023;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 ensembl protein_coding_gene 32214 33464 . + . ID=Phyra74024;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000007;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 32214 33464 . + . ID=Phyra74024;Parent=Phyra74024;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 32214 33464 . + 0 ID=Phyra74024;Parent=Phyra74024;rank=1 scaffold_6 . exon 32214 33464 . + . ID=Phyra74024.1;Parent=Phyra74024;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 35028 35690 . - . ID=Phyra74026;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000009;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 35028 35690 . - . ID=Phyra74026;Parent=Phyra74026;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 35028 35246 . - 0 ID=Phyra74026;Parent=Phyra74026;rank=2 scaffold_6 . exon 35028 35246 . - . ID=Phyra74026.2;Parent=Phyra74026;constitutive=1;rank=2 scaffold_6 . CDS 35337 35690 . - 0 ID=Phyra74026;Parent=Phyra74026;rank=1 scaffold_6 . exon 35337 35690 . - . ID=Phyra74026.1;Parent=Phyra74026;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 35834 38305 . + . ID=Phyra74027;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000010;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 35834 38305 . + . ID=Phyra74027;Parent=Phyra74027;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 35834 38305 . + 0 ID=Phyra74027;Parent=Phyra74027;rank=1 scaffold_6 . exon 35834 38305 . + . ID=Phyra74027.1;Parent=Phyra74027;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 38375 40921 . - . ID=Phyra93784;biotype=protein_coding;external_name=C_scaffold_6000006;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 38375 40921 . - . ID=Phyra93784;Parent=Phyra93784;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 38375 38500 . - 0 ID=Phyra93784;Parent=Phyra93784;rank=8 scaffold_6 . exon 38375 38500 . - . ID=Phyra93784.8;Parent=Phyra93784;constitutive=1;rank=8 scaffold_6 . CDS 38576 38644 . - 0 ID=Phyra93784;Parent=Phyra93784;rank=7 scaffold_6 . exon 38576 38644 . - . ID=Phyra93784.7;Parent=Phyra93784;constitutive=1;rank=7 scaffold_6 . CDS 38709 38802 . - 0 ID=Phyra93784;Parent=Phyra93784;rank=6 scaffold_6 . exon 38709 38802 . - . ID=Phyra93784.6;Parent=Phyra93784;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . CDS 38868 38955 . - 0 ID=Phyra93784;Parent=Phyra93784;rank=5 scaffold_6 . exon 38868 38955 . - . ID=Phyra93784.5;Parent=Phyra93784;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_6 . CDS 39021 39162 . - 0 ID=Phyra93784;Parent=Phyra93784;rank=4 scaffold_6 . exon 39021 39162 . - . ID=Phyra93784.4;Parent=Phyra93784;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . CDS 39222 39385 . - 0 ID=Phyra93784;Parent=Phyra93784;rank=3 scaffold_6 . exon 39222 39385 . - . ID=Phyra93784.3;Parent=Phyra93784;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 39450 40044 . - 0 ID=Phyra93784;Parent=Phyra93784;rank=2 scaffold_6 . exon 39450 40044 . - . ID=Phyra93784.2;Parent=Phyra93784;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 40238 40921 . - 0 ID=Phyra93784;Parent=Phyra93784;rank=1 scaffold_6 . repeat_region 43040 43049 . ? . description=dust scaffold_6 ensembl protein_coding_gene 49295 51850 . - . ID=Phyra51456;biotype=protein_coding;external_name=gwEuk.6.148.1;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 49295 51850 . - . ID=Phyra51456;Parent=Phyra51456;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 49295 50064 . - 0 ID=Phyra51456;Parent=Phyra51456;rank=5 scaffold_6 . exon 49295 50064 . - . ID=Phyra51456.5;Parent=Phyra51456;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 50449 50851 . - 0 ID=Phyra51456;Parent=Phyra51456;rank=4 scaffold_6 . CDS 50927 50995 . - 0 ID=Phyra51456;Parent=Phyra51456;rank=3 scaffold_6 . CDS 51064 51156 . - 0 ID=Phyra51456;Parent=Phyra51456;rank=2 scaffold_6 . CDS 51227 51850 . - 0 ID=Phyra51456;Parent=Phyra51456;rank=1 scaffold_6 ensembl protein_coding_gene 44294 45337 . - . ID=Phyra74029;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000012;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 44294 45337 . - . ID=Phyra74029;Parent=Phyra74029;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 44294 45337 . - 0 ID=Phyra74029;Parent=Phyra74029;rank=1 scaffold_6 . exon 44294 45337 . - . ID=Phyra74029.1;Parent=Phyra74029;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 45532 48081 . + . ID=Phyra74030;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000013;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 45532 48081 . + . ID=Phyra74030;Parent=Phyra74030;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 45532 48081 . + 0 ID=Phyra74030;Parent=Phyra74030;rank=1 scaffold_6 . exon 45532 48081 . + . ID=Phyra74030.1;Parent=Phyra74030;constitutive=1;rank=1 scaffold_6 . exon 40238 40921 . - . ID=Phyra93784.1;Parent=Phyra93784;constitutive=1;rank=1 scaffold_6 . repeat_region 49993 50034 . ? . description=trf scaffold_6 . repeat_region 52761 52792 . ? . description=trf scaffold_6 . repeat_region 52769 52890 . ? . description=trf scaffold_6 . exon 50449 50851 . - . ID=Phyra51456.4;Parent=Phyra51456;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . exon 50927 50995 . - . ID=Phyra51456.3;Parent=Phyra51456;constitutive=1;rank=3 scaffold_6 . exon 51064 51156 . - . ID=Phyra51456.2;Parent=Phyra51456;constitutive=1;rank=2 scaffold_6 . exon 51227 51850 . - . ID=Phyra51456.1;Parent=Phyra51456;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 52217 55969 . - . ID=Phyra74032;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000015;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 52217 55969 . - . ID=Phyra74032;Parent=Phyra74032;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 52217 55969 . - 0 ID=Phyra74032;Parent=Phyra74032;rank=1 scaffold_6 . exon 52217 55969 . - . ID=Phyra74032.1;Parent=Phyra74032;constitutive=1;rank=1 scaffold_6 . repeat_region 59400 60102 . + . description=Sola3-2_PS scaffold_6 . repeat_region 60733 60782 . ? . description=dust scaffold_6 . repeat_region 62758 63460 . + . description=Sola3-2_PS scaffold_6 . repeat_region 66421 67123 . + . description=Sola3-2_PS scaffold_6 . biological_region 68936 68938 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 68070 69016 . - . ID=Phyra51464;biotype=protein_coding;external_name=gwEuk.6.156.1;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 68070 69016 . - . ID=Phyra51464;Parent=Phyra51464;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 68070 68223 . - 0 ID=Phyra51464;Parent=Phyra51464;rank=4 scaffold_6 . exon 68070 68223 . - . ID=Phyra51464.4;Parent=Phyra51464;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 68295 68576 . - 0 ID=Phyra51464;Parent=Phyra51464;rank=3 scaffold_6 . exon 68295 68576 . - . ID=Phyra51464.3;Parent=Phyra51464;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_6 . CDS 68633 68750 . - 0 ID=Phyra51464;Parent=Phyra51464;rank=2 scaffold_6 . exon 68633 68750 . - . ID=Phyra51464.2;Parent=Phyra51464;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 68809 69016 . - 0 ID=Phyra51464;Parent=Phyra51464;rank=1 scaffold_6 . exon 68809 69016 . - . ID=Phyra51464.1;Parent=Phyra51464;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 59496 61266 . + . ID=Phyra74033;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000016;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 59496 61266 . + . ID=Phyra74033;Parent=Phyra74033;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 59496 60719 . + 0 ID=Phyra74033;Parent=Phyra74033;rank=1 scaffold_6 . exon 59496 60719 . + . ID=Phyra74033.1;Parent=Phyra74033;constitutive=1;rank=1 scaffold_6 . CDS 61180 61266 . + 0 ID=Phyra74033;Parent=Phyra74033;rank=2 scaffold_6 . exon 61180 61266 . + . ID=Phyra74033.2;Parent=Phyra74033;constitutive=1;rank=2 scaffold_6 ensembl protein_coding_gene 62854 64098 . + . ID=Phyra74034;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000017;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 62854 64098 . + . ID=Phyra74034;Parent=Phyra74034;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 62854 64098 . + 0 ID=Phyra74034;Parent=Phyra74034;rank=1 scaffold_6 . exon 62854 64098 . + . ID=Phyra74034.1;Parent=Phyra74034;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 66318 67748 . + . ID=Phyra74035;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000018;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 66318 67748 . + . ID=Phyra74035;Parent=Phyra74035;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 66318 67748 . + 0 ID=Phyra74035;Parent=Phyra74035;rank=1 scaffold_6 . exon 66318 67748 . + . ID=Phyra74035.1;Parent=Phyra74035;constitutive=1;rank=1 scaffold_6 . repeat_region 73640 73668 . ? . description=trf scaffold_6 ensembl protein_coding_gene 69279 71042 . + . ID=Phyra74037;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000020;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 69279 71042 . + . ID=Phyra74037;Parent=Phyra74037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 69279 69377 . + 0 ID=Phyra74037;Parent=Phyra74037;rank=1 scaffold_6 . exon 69279 69377 . + . ID=Phyra74037.1;Parent=Phyra74037;constitutive=1;rank=1 scaffold_6 . CDS 69436 69514 . + 0 ID=Phyra74037;Parent=Phyra74037;rank=2 scaffold_6 . exon 69436 69514 . + . ID=Phyra74037.2;Parent=Phyra74037;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 69584 69711 . + 0 ID=Phyra74037;Parent=Phyra74037;rank=3 scaffold_6 . exon 69584 69711 . + . ID=Phyra74037.3;Parent=Phyra74037;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 69772 69821 . + 0 ID=Phyra74037;Parent=Phyra74037;rank=4 scaffold_6 . exon 69772 69821 . + . ID=Phyra74037.4;Parent=Phyra74037;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . CDS 69886 70030 . + 0 ID=Phyra74037;Parent=Phyra74037;rank=5 scaffold_6 . exon 69886 70030 . + . ID=Phyra74037.5;Parent=Phyra74037;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 70188 70238 . + 0 ID=Phyra74037;Parent=Phyra74037;rank=6 scaffold_6 . exon 70188 70238 . + . ID=Phyra74037.6;Parent=Phyra74037;constitutive=1;rank=6 scaffold_6 . CDS 70374 70625 . + 0 ID=Phyra74037;Parent=Phyra74037;rank=7 scaffold_6 . exon 70374 70625 . + . ID=Phyra74037.7;Parent=Phyra74037;constitutive=1;rank=7 scaffold_6 . CDS 70700 70793 . + 0 ID=Phyra74037;Parent=Phyra74037;rank=8 scaffold_6 . exon 70700 70793 . + . ID=Phyra74037.8;Parent=Phyra74037;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_6 . CDS 70853 70940 . + 0 ID=Phyra74037;Parent=Phyra74037;rank=9 scaffold_6 . exon 70853 70940 . + . ID=Phyra74037.9;Parent=Phyra74037;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_6 . CDS 71003 71042 . + 0 ID=Phyra74037;Parent=Phyra74037;rank=10 scaffold_6 . exon 71003 71042 . + . ID=Phyra74037.10;Parent=Phyra74037;constitutive=1;ensembl_phase=2;rank=10 scaffold_6 ensembl protein_coding_gene 71134 72606 . - . ID=Phyra74038;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000021;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 71134 72606 . - . ID=Phyra74038;Parent=Phyra74038;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 71134 72606 . - 0 ID=Phyra74038;Parent=Phyra74038;rank=1 scaffold_6 . exon 71134 72606 . - . ID=Phyra74038.1;Parent=Phyra74038;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 73021 73599 . + . ID=Phyra74039;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000022;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 73021 73599 . + . ID=Phyra74039;Parent=Phyra74039;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 73021 73599 . + 0 ID=Phyra74039;Parent=Phyra74039;rank=1 scaffold_6 . exon 73021 73599 . + . ID=Phyra74039.1;Parent=Phyra74039;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 73857 76317 . + . ID=Phyra74040;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000023;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 73857 76317 . + . ID=Phyra74040;Parent=Phyra74040;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 73857 73859 . + 0 ID=Phyra74040;Parent=Phyra74040;rank=1 scaffold_6 . exon 73857 73859 . + . ID=Phyra74040.1;Parent=Phyra74040;constitutive=1;rank=1 scaffold_6 . CDS 73999 74129 . + 0 ID=Phyra74040;Parent=Phyra74040;rank=2 scaffold_6 . exon 73999 74129 . + . ID=Phyra74040.2;Parent=Phyra74040;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 74195 74786 . + 0 ID=Phyra74040;Parent=Phyra74040;rank=3 scaffold_6 . exon 74195 74786 . + . ID=Phyra74040.3;Parent=Phyra74040;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 74854 76317 . + 0 ID=Phyra74040;Parent=Phyra74040;rank=4 scaffold_6 . exon 74854 76317 . + . ID=Phyra74040.4;Parent=Phyra74040;constitutive=1;rank=4 scaffold_6 ensembl protein_coding_gene 76588 79717 . - . ID=Phyra93786;biotype=protein_coding;external_name=C_scaffold_6000008;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 76588 79717 . - . ID=Phyra93786;Parent=Phyra93786;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 76588 76859 . - 0 ID=Phyra93786;Parent=Phyra93786;rank=11 scaffold_6 . exon 76588 76859 . - . ID=Phyra93786.11;Parent=Phyra93786;constitutive=1;ensembl_phase=1;rank=11 scaffold_6 . CDS 76935 77502 . - 0 ID=Phyra93786;Parent=Phyra93786;rank=10 scaffold_6 . exon 76935 77502 . - . ID=Phyra93786.10;Parent=Phyra93786;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_6 . CDS 77622 77846 . - 0 ID=Phyra93786;Parent=Phyra93786;rank=9 scaffold_6 . exon 77622 77846 . - . ID=Phyra93786.9;Parent=Phyra93786;constitutive=1;rank=9 scaffold_6 . CDS 78471 78554 . - 0 ID=Phyra93786;Parent=Phyra93786;rank=8 scaffold_6 . exon 78471 78554 . - . ID=Phyra93786.8;Parent=Phyra93786;constitutive=1;rank=8 scaffold_6 . CDS 78640 78747 . - 0 ID=Phyra93786;Parent=Phyra93786;rank=7 scaffold_6 . exon 78640 78747 . - . ID=Phyra93786.7;Parent=Phyra93786;constitutive=1;rank=7 scaffold_6 . CDS 78816 78965 . - 0 ID=Phyra93786;Parent=Phyra93786;rank=6 scaffold_6 . exon 78816 78965 . - . ID=Phyra93786.6;Parent=Phyra93786;constitutive=1;rank=6 scaffold_6 . CDS 79056 79080 . - 0 ID=Phyra93786;Parent=Phyra93786;rank=5 scaffold_6 . CDS 79145 79236 . - 0 ID=Phyra93786;Parent=Phyra93786;rank=4 scaffold_6 . CDS 79309 79403 . - 0 ID=Phyra93786;Parent=Phyra93786;rank=3 scaffold_6 . CDS 79485 79555 . - 0 ID=Phyra93786;Parent=Phyra93786;rank=2 scaffold_6 . CDS 79641 79717 . - 0 ID=Phyra93786;Parent=Phyra93786;rank=1 scaffold_6 . biological_region 84234 84239 0.999 + . logic_name=eponine scaffold_6 . biological_region 87974 87975 0.999 + . logic_name=eponine scaffold_6 . biological_region 87986 87988 0.999 - . logic_name=eponine scaffold_6 . biological_region 88058 88059 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 80056 80655 . + . ID=Phyra74042;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000025;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 80056 80655 . + . ID=Phyra74042;Parent=Phyra74042;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 80056 80172 . + 0 ID=Phyra74042;Parent=Phyra74042;rank=1 scaffold_6 . exon 80056 80172 . + . ID=Phyra74042.1;Parent=Phyra74042;constitutive=1;rank=1 scaffold_6 . CDS 80237 80579 . + 0 ID=Phyra74042;Parent=Phyra74042;rank=2 scaffold_6 . exon 80237 80579 . + . ID=Phyra74042.2;Parent=Phyra74042;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 80630 80655 . + 0 ID=Phyra74042;Parent=Phyra74042;rank=3 scaffold_6 . exon 80630 80655 . + . ID=Phyra74042.3;Parent=Phyra74042;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 ensembl protein_coding_gene 80854 81270 . - . ID=Phyra74043;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000026;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 80854 81270 . - . ID=Phyra74043;Parent=Phyra74043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 80854 81270 . - 0 ID=Phyra74043;Parent=Phyra74043;rank=1 scaffold_6 . exon 80854 81270 . - . ID=Phyra74043.1;Parent=Phyra74043;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 81465 83120 . - . ID=Phyra74044;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000027;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 81465 83120 . - . ID=Phyra74044;Parent=Phyra74044;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 81465 83120 . - 0 ID=Phyra74044;Parent=Phyra74044;rank=1 scaffold_6 . exon 81465 83120 . - . ID=Phyra74044.1;Parent=Phyra74044;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 84056 85978 . - . ID=Phyra74045;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000028;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 84056 85978 . - . ID=Phyra74045;Parent=Phyra74045;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 84056 85978 . - 0 ID=Phyra74045;Parent=Phyra74045;rank=1 scaffold_6 . exon 84056 85978 . - . ID=Phyra74045.1;Parent=Phyra74045;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 87011 87559 . + . ID=Phyra74046;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000029;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 87011 87559 . + . ID=Phyra74046;Parent=Phyra74046;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 87011 87559 . + 0 ID=Phyra74046;Parent=Phyra74046;rank=1 scaffold_6 . exon 87011 87559 . + . ID=Phyra74046.1;Parent=Phyra74046;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 88300 93223 . - . ID=Phyra74047;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000030;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 88300 93223 . - . ID=Phyra74047;Parent=Phyra74047;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 88300 88311 . - 0 ID=Phyra74047;Parent=Phyra74047;rank=2 scaffold_6 . exon 88300 88311 . - . ID=Phyra74047.2;Parent=Phyra74047;constitutive=1;rank=2 scaffold_6 . CDS 88367 93223 . - 0 ID=Phyra74047;Parent=Phyra74047;rank=1 scaffold_6 . exon 88367 93223 . - . ID=Phyra74047.1;Parent=Phyra74047;constitutive=1;rank=1 scaffold_6 . exon 79056 79080 . - . ID=Phyra93786.5;Parent=Phyra93786;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . exon 79145 79236 . - . ID=Phyra93786.4;Parent=Phyra93786;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . exon 79309 79403 . - . ID=Phyra93786.3;Parent=Phyra93786;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . exon 79485 79555 . - . ID=Phyra93786.2;Parent=Phyra93786;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_6 . exon 79641 79717 . - . ID=Phyra93786.1;Parent=Phyra93786;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . repeat_region 97235 97255 . ? . description=trf scaffold_6 . repeat_region 97235 97255 . ? . description=dust scaffold_6 ensembl protein_coding_gene 94495 96141 . - . ID=Phyra74048;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000031;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 94495 96141 . - . ID=Phyra74048;Parent=Phyra74048;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 94495 94539 . - 0 ID=Phyra74048;Parent=Phyra74048;rank=5 scaffold_6 . exon 94495 94539 . - . ID=Phyra74048.5;Parent=Phyra74048;constitutive=1;rank=5 scaffold_6 . CDS 94602 95742 . - 0 ID=Phyra74048;Parent=Phyra74048;rank=4 scaffold_6 . exon 94602 95742 . - . ID=Phyra74048.4;Parent=Phyra74048;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 95809 95897 . - 0 ID=Phyra74048;Parent=Phyra74048;rank=3 scaffold_6 . exon 95809 95897 . - . ID=Phyra74048.3;Parent=Phyra74048;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_6 . CDS 95963 96026 . - 0 ID=Phyra74048;Parent=Phyra74048;rank=2 scaffold_6 . exon 95963 96026 . - . ID=Phyra74048.2;Parent=Phyra74048;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 96101 96141 . - 0 ID=Phyra74048;Parent=Phyra74048;rank=1 scaffold_6 . exon 96101 96141 . - . ID=Phyra74048.1;Parent=Phyra74048;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 98405 103656 . - . ID=Phyra74050;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000033;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 98405 103656 . - . ID=Phyra74050;Parent=Phyra74050;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 98405 98436 . - 0 ID=Phyra74050;Parent=Phyra74050;rank=11 scaffold_6 . exon 98405 98436 . - . ID=Phyra74050.11;Parent=Phyra74050;constitutive=1;ensembl_phase=1;rank=11 scaffold_6 . CDS 98504 99007 . - 0 ID=Phyra74050;Parent=Phyra74050;rank=10 scaffold_6 . exon 98504 99007 . - . ID=Phyra74050.10;Parent=Phyra74050;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_6 . CDS 99260 99859 . - 0 ID=Phyra74050;Parent=Phyra74050;rank=9 scaffold_6 . CDS 100016 100721 . - 0 ID=Phyra74050;Parent=Phyra74050;rank=8 scaffold_6 . CDS 100810 100969 . - 0 ID=Phyra74050;Parent=Phyra74050;rank=7 scaffold_6 . CDS 101343 101973 . - 0 ID=Phyra74050;Parent=Phyra74050;rank=6 scaffold_6 . CDS 102244 102315 . - 0 ID=Phyra74050;Parent=Phyra74050;rank=5 scaffold_6 . CDS 102490 102585 . - 0 ID=Phyra74050;Parent=Phyra74050;rank=4 scaffold_6 . CDS 102691 102713 . - 0 ID=Phyra74050;Parent=Phyra74050;rank=3 scaffold_6 . CDS 102827 103161 . - 0 ID=Phyra74050;Parent=Phyra74050;rank=2 scaffold_6 . CDS 103378 103656 . - 0 ID=Phyra74050;Parent=Phyra74050;rank=1 scaffold_6 ensembl protein_coding_gene 96332 97639 . + . ID=Phyra93787;biotype=protein_coding;external_name=C_scaffold_6000009;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 96332 97639 . + . ID=Phyra93787;Parent=Phyra93787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 96332 96610 . + 0 ID=Phyra93787;Parent=Phyra93787;rank=1 scaffold_6 . exon 96332 96610 . + . ID=Phyra93787.1;Parent=Phyra93787;constitutive=1;rank=1 scaffold_6 . CDS 96858 97162 . + 0 ID=Phyra93787;Parent=Phyra93787;rank=2 scaffold_6 . exon 96858 97162 . + . ID=Phyra93787.2;Parent=Phyra93787;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 97276 97639 . + 0 ID=Phyra93787;Parent=Phyra93787;rank=3 scaffold_6 . exon 97276 97639 . + . ID=Phyra93787.3;Parent=Phyra93787;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . biological_region 100438 100441 0.999 + . logic_name=eponine scaffold_6 . biological_region 107992 107997 0.999 + . logic_name=eponine scaffold_6 . biological_region 108036 108044 0.999 + . logic_name=eponine scaffold_6 . biological_region 108059 108064 0.999 + . logic_name=eponine scaffold_6 . biological_region 108107 108111 0.999 - . logic_name=eponine scaffold_6 . exon 99260 99859 . - . ID=Phyra74050.9;Parent=Phyra74050;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_6 . exon 100016 100721 . - . ID=Phyra74050.8;Parent=Phyra74050;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_6 . exon 100810 100969 . - . ID=Phyra74050.7;Parent=Phyra74050;constitutive=1;ensembl_phase=2;rank=7 scaffold_6 . exon 101343 101973 . - . ID=Phyra74050.6;Parent=Phyra74050;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_6 . exon 102244 102315 . - . ID=Phyra74050.5;Parent=Phyra74050;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_6 . exon 102490 102585 . - . ID=Phyra74050.4;Parent=Phyra74050;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . exon 102691 102713 . - . ID=Phyra74050.3;Parent=Phyra74050;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_6 . exon 102827 103161 . - . ID=Phyra74050.2;Parent=Phyra74050;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . exon 103378 103656 . - . ID=Phyra74050.1;Parent=Phyra74050;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 103875 105701 . - . ID=Phyra74051;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000034;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 103875 105701 . - . ID=Phyra74051;Parent=Phyra74051;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 103875 105296 . - 0 ID=Phyra74051;Parent=Phyra74051;rank=4 scaffold_6 . exon 103875 105296 . - . ID=Phyra74051.4;Parent=Phyra74051;constitutive=1;rank=4 scaffold_6 . CDS 105362 105454 . - 0 ID=Phyra74051;Parent=Phyra74051;rank=3 scaffold_6 . exon 105362 105454 . - . ID=Phyra74051.3;Parent=Phyra74051;constitutive=1;rank=3 scaffold_6 . CDS 105520 105611 . - 0 ID=Phyra74051;Parent=Phyra74051;rank=2 scaffold_6 . exon 105520 105611 . - . ID=Phyra74051.2;Parent=Phyra74051;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 105677 105701 . - 0 ID=Phyra74051;Parent=Phyra74051;rank=1 scaffold_6 . exon 105677 105701 . - . ID=Phyra74051.1;Parent=Phyra74051;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 107724 110741 . + . ID=Phyra74052;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000035;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 107724 110741 . + . ID=Phyra74052;Parent=Phyra74052;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 107724 110741 . + 0 ID=Phyra74052;Parent=Phyra74052;rank=1 scaffold_6 . exon 107724 110741 . + . ID=Phyra74052.1;Parent=Phyra74052;constitutive=1;rank=1 scaffold_6 . repeat_region 114819 114843 . ? . description=trf scaffold_6 . repeat_region 115150 115194 . ? . description=trf scaffold_6 . repeat_region 115899 115935 . ? . description=trf scaffold_6 ensembl protein_coding_gene 111080 112123 . - . ID=Phyra74053;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000036;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 111080 112123 . - . ID=Phyra74053;Parent=Phyra74053;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 111080 112123 . - 0 ID=Phyra74053;Parent=Phyra74053;rank=1 scaffold_6 . exon 111080 112123 . - . ID=Phyra74053.1;Parent=Phyra74053;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 112563 115955 . - . ID=Phyra74054;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000037;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 112563 115955 . - . ID=Phyra74054;Parent=Phyra74054;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 112563 112868 . - 0 ID=Phyra74054;Parent=Phyra74054;rank=3 scaffold_6 . exon 112563 112868 . - . ID=Phyra74054.3;Parent=Phyra74054;constitutive=1;rank=3 scaffold_6 . CDS 112942 115731 . - 0 ID=Phyra74054;Parent=Phyra74054;rank=2 scaffold_6 . exon 112942 115731 . - . ID=Phyra74054.2;Parent=Phyra74054;constitutive=1;rank=2 scaffold_6 . CDS 115812 115955 . - 0 ID=Phyra74054;Parent=Phyra74054;rank=1 scaffold_6 . exon 115812 115955 . - . ID=Phyra74054.1;Parent=Phyra74054;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 118680 120149 . + . ID=Phyra74055;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000038;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 118680 120149 . + . ID=Phyra74055;Parent=Phyra74055;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 118680 120149 . + 0 ID=Phyra74055;Parent=Phyra74055;rank=1 scaffold_6 . exon 118680 120149 . + . ID=Phyra74055.1;Parent=Phyra74055;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 120498 121670 . - . ID=Phyra74056;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000039;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 120498 121670 . - . ID=Phyra74056;Parent=Phyra74056;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 120498 121670 . - 0 ID=Phyra74056;Parent=Phyra74056;rank=1 scaffold_6 . exon 120498 121670 . - . ID=Phyra74056.1;Parent=Phyra74056;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 121878 122759 . + . ID=Phyra74057;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000040;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 121878 122759 . + . ID=Phyra74057;Parent=Phyra74057;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 121878 122759 . + 0 ID=Phyra74057;Parent=Phyra74057;rank=1 scaffold_6 . exon 121878 122759 . + . ID=Phyra74057.1;Parent=Phyra74057;constitutive=1;rank=1 scaffold_6 . repeat_region 128707 128717 . ? . description=dust scaffold_6 . biological_region 135994 136000 0.999 - . logic_name=eponine scaffold_6 . repeat_region 136089 136107 . ? . description=dust scaffold_6 . biological_region 136263 136266 0.999 + . logic_name=eponine scaffold_6 . biological_region 136702 136707 0.999 + . logic_name=eponine scaffold_6 . repeat_region 136983 136995 . ? . description=dust scaffold_6 ensembl protein_coding_gene 132469 135597 . - . ID=Phyra74058;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000041;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 132469 135597 . - . ID=Phyra74058;Parent=Phyra74058;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 132469 132677 . - 0 ID=Phyra74058;Parent=Phyra74058;rank=6 scaffold_6 . exon 132469 132677 . - . ID=Phyra74058.6;Parent=Phyra74058;constitutive=1;ensembl_phase=1;rank=6 scaffold_6 . CDS 132922 133026 . - 0 ID=Phyra74058;Parent=Phyra74058;rank=5 scaffold_6 . exon 132922 133026 . - . ID=Phyra74058.5;Parent=Phyra74058;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 133099 133540 . - 0 ID=Phyra74058;Parent=Phyra74058;rank=4 scaffold_6 . exon 133099 133540 . - . ID=Phyra74058.4;Parent=Phyra74058;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . CDS 133616 133879 . - 0 ID=Phyra74058;Parent=Phyra74058;rank=3 scaffold_6 . exon 133616 133879 . - . ID=Phyra74058.3;Parent=Phyra74058;constitutive=1;rank=3 scaffold_6 . CDS 133945 134001 . - 0 ID=Phyra74058;Parent=Phyra74058;rank=2 scaffold_6 . exon 133945 134001 . - . ID=Phyra74058.2;Parent=Phyra74058;constitutive=1;rank=2 scaffold_6 . CDS 134074 135597 . - 0 ID=Phyra74058;Parent=Phyra74058;rank=1 scaffold_6 . exon 134074 135597 . - . ID=Phyra74058.1;Parent=Phyra74058;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 137883 138362 . - . ID=Phyra74059;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000042;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 137883 138362 . - . ID=Phyra74059;Parent=Phyra74059;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 137883 138362 . - 0 ID=Phyra74059;Parent=Phyra74059;rank=1 scaffold_6 . exon 137883 138362 . - . ID=Phyra74059.1;Parent=Phyra74059;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 145796 147435 . + . ID=Phyra51466;biotype=protein_coding;external_name=gwEuk.6.158.1;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 145796 147435 . + . ID=Phyra51466;Parent=Phyra51466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 145796 147247 . + 0 ID=Phyra51466;Parent=Phyra51466;rank=1 scaffold_6 . exon 145796 147247 . + . ID=Phyra51466.1;Parent=Phyra51466;constitutive=1;rank=1 scaffold_6 . CDS 147322 147435 . + 0 ID=Phyra51466;Parent=Phyra51466;rank=2 scaffold_6 . exon 147322 147435 . + . ID=Phyra51466.2;Parent=Phyra51466;constitutive=1;rank=2 scaffold_6 ensembl protein_coding_gene 142315 143907 . - . ID=Phyra74060;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000043;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 142315 143907 . - . ID=Phyra74060;Parent=Phyra74060;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 142315 143907 . - 0 ID=Phyra74060;Parent=Phyra74060;rank=1 scaffold_6 . exon 142315 143907 . - . ID=Phyra74060.1;Parent=Phyra74060;constitutive=1;rank=1 scaffold_6 . biological_region 153925 153925 0.999 - . logic_name=eponine scaffold_6 . biological_region 154975 154976 0.999 - . logic_name=eponine scaffold_6 . biological_region 157199 157199 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 153710 158311 . - . ID=Phyra71168;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_6000002;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 153710 158311 . - . ID=Phyra71168;Parent=Phyra71168;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 153710 154969 . - 0 ID=Phyra71168;Parent=Phyra71168;rank=5 scaffold_6 . exon 153710 154969 . - . ID=Phyra71168.5;Parent=Phyra71168;constitutive=1;rank=5 scaffold_6 . CDS 155032 155035 . - 0 ID=Phyra71168;Parent=Phyra71168;rank=4 scaffold_6 . exon 155032 155035 . - . ID=Phyra71168.4;Parent=Phyra71168;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 155115 155205 . - 0 ID=Phyra71168;Parent=Phyra71168;rank=3 scaffold_6 . exon 155115 155205 . - . ID=Phyra71168.3;Parent=Phyra71168;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_6 . CDS 155236 155362 . - 0 ID=Phyra71168;Parent=Phyra71168;rank=2 scaffold_6 . exon 155236 155362 . - . ID=Phyra71168.2;Parent=Phyra71168;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 155432 158311 . - 0 ID=Phyra71168;Parent=Phyra71168;rank=1 scaffold_6 . exon 155432 158311 . - . ID=Phyra71168.1;Parent=Phyra71168;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 148703 150337 . + . ID=Phyra74062;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000045;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 148703 150337 . + . ID=Phyra74062;Parent=Phyra74062;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 148703 148868 . + 0 ID=Phyra74062;Parent=Phyra74062;rank=1 scaffold_6 . exon 148703 148868 . + . ID=Phyra74062.1;Parent=Phyra74062;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 148941 150337 . + 0 ID=Phyra74062;Parent=Phyra74062;rank=2 scaffold_6 . exon 148941 150337 . + . ID=Phyra74062.2;Parent=Phyra74062;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 ensembl protein_coding_gene 150768 153560 . + . ID=Phyra74063;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000046;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 150768 153560 . + . ID=Phyra74063;Parent=Phyra74063;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 150768 151202 . + 0 ID=Phyra74063;Parent=Phyra74063;rank=1 scaffold_6 . exon 150768 151202 . + . ID=Phyra74063.1;Parent=Phyra74063;constitutive=1;rank=1 scaffold_6 . CDS 151303 151386 . + 0 ID=Phyra74063;Parent=Phyra74063;rank=2 scaffold_6 . exon 151303 151386 . + . ID=Phyra74063.2;Parent=Phyra74063;constitutive=1;rank=2 scaffold_6 . CDS 151452 151538 . + 0 ID=Phyra74063;Parent=Phyra74063;rank=3 scaffold_6 . exon 151452 151538 . + . ID=Phyra74063.3;Parent=Phyra74063;constitutive=1;rank=3 scaffold_6 . CDS 151798 151998 . + 0 ID=Phyra74063;Parent=Phyra74063;rank=4 scaffold_6 . exon 151798 151998 . + . ID=Phyra74063.4;Parent=Phyra74063;constitutive=1;rank=4 scaffold_6 . CDS 152311 152732 . + 0 ID=Phyra74063;Parent=Phyra74063;rank=5 scaffold_6 . exon 152311 152732 . + . ID=Phyra74063.5;Parent=Phyra74063;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_6 . CDS 152801 153560 . + 0 ID=Phyra74063;Parent=Phyra74063;rank=6 scaffold_6 . exon 152801 153560 . + . ID=Phyra74063.6;Parent=Phyra74063;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . repeat_region 158659 158698 . ? . description=dust scaffold_6 . repeat_region 159272 159388 . + . description=(CTG)n scaffold_6 . repeat_region 159307 159347 . ? . description=trf scaffold_6 . repeat_region 159317 159365 . ? . description=dust scaffold_6 . repeat_region 159686 159705 . ? . description=trf scaffold_6 . repeat_region 160579 160586 . ? . description=dust scaffold_6 . repeat_region 160797 160847 . ? . description=dust scaffold_6 . repeat_region 160799 160827 . ? . description=trf scaffold_6 . repeat_region 160814 160856 . ? . description=trf scaffold_6 . repeat_region 166854 167044 . - . description=Sola3-2_PS scaffold_6 ensembl protein_coding_gene 158645 160537 . - . ID=Phyra74065;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000048;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 158645 160537 . - . ID=Phyra74065;Parent=Phyra74065;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 158645 160537 . - 0 ID=Phyra74065;Parent=Phyra74065;rank=1 scaffold_6 . exon 158645 160537 . - . ID=Phyra74065.1;Parent=Phyra74065;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 161027 162215 . + . ID=Phyra74066;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000049;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 161027 162215 . + . ID=Phyra74066;Parent=Phyra74066;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 161027 161398 . + 0 ID=Phyra74066;Parent=Phyra74066;rank=1 scaffold_6 . exon 161027 161398 . + . ID=Phyra74066.1;Parent=Phyra74066;constitutive=1;rank=1 scaffold_6 . CDS 161461 161811 . + 0 ID=Phyra74066;Parent=Phyra74066;rank=2 scaffold_6 . exon 161461 161811 . + . ID=Phyra74066.2;Parent=Phyra74066;constitutive=1;rank=2 scaffold_6 . CDS 161874 162215 . + 0 ID=Phyra74066;Parent=Phyra74066;rank=3 scaffold_6 . exon 161874 162215 . + . ID=Phyra74066.3;Parent=Phyra74066;constitutive=1;rank=3 scaffold_6 ensembl protein_coding_gene 162496 163200 . + . ID=Phyra74067;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000050;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 162496 163200 . + . ID=Phyra74067;Parent=Phyra74067;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 162496 163200 . + 0 ID=Phyra74067;Parent=Phyra74067;rank=1 scaffold_6 . exon 162496 163200 . + . ID=Phyra74067.1;Parent=Phyra74067;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 164953 165722 . - . ID=Phyra74068;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000051;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 164953 165722 . - . ID=Phyra74068;Parent=Phyra74068;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 164953 164988 . - 0 ID=Phyra74068;Parent=Phyra74068;rank=3 scaffold_6 . exon 164953 164988 . - . ID=Phyra74068.3;Parent=Phyra74068;constitutive=1;rank=3 scaffold_6 . CDS 165008 165106 . - 0 ID=Phyra74068;Parent=Phyra74068;rank=2 scaffold_6 . exon 165008 165106 . - . ID=Phyra74068.2;Parent=Phyra74068;constitutive=1;rank=2 scaffold_6 . CDS 165174 165722 . - 0 ID=Phyra74068;Parent=Phyra74068;rank=1 scaffold_6 . exon 165174 165722 . - . ID=Phyra74068.1;Parent=Phyra74068;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 166212 168161 . - . ID=Phyra74069;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000052;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 166212 168161 . - . ID=Phyra74069;Parent=Phyra74069;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 166212 168161 . - 0 ID=Phyra74069;Parent=Phyra74069;rank=1 scaffold_6 . exon 166212 168161 . - . ID=Phyra74069.1;Parent=Phyra74069;constitutive=1;rank=1 scaffold_6 . biological_region 171742 171746 0.999 + . logic_name=eponine scaffold_6 . biological_region 171804 171809 0.999 - . logic_name=eponine scaffold_6 . biological_region 176718 176719 0.999 + . logic_name=eponine scaffold_6 . biological_region 176808 176810 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 171862 174719 . + . ID=Phyra51479;biotype=protein_coding;external_name=gwEuk.6.171.1;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 171862 174719 . + . ID=Phyra51479;Parent=Phyra51479;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 171862 172714 . + 0 ID=Phyra51479;Parent=Phyra51479;rank=1 scaffold_6 . exon 171862 172714 . + . ID=Phyra51479.1;Parent=Phyra51479;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 172788 172987 . + 0 ID=Phyra51479;Parent=Phyra51479;rank=2 scaffold_6 . exon 172788 172987 . + . ID=Phyra51479.2;Parent=Phyra51479;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 173062 173493 . + 0 ID=Phyra51479;Parent=Phyra51479;rank=3 scaffold_6 . exon 173062 173493 . + . ID=Phyra51479.3;Parent=Phyra51479;constitutive=1;rank=3 scaffold_6 . CDS 173570 173701 . + 0 ID=Phyra51479;Parent=Phyra51479;rank=4 scaffold_6 . exon 173570 173701 . + . ID=Phyra51479.4;Parent=Phyra51479;constitutive=1;rank=4 scaffold_6 . CDS 173776 173928 . + 0 ID=Phyra51479;Parent=Phyra51479;rank=5 scaffold_6 . exon 173776 173928 . + . ID=Phyra51479.5;Parent=Phyra51479;constitutive=1;rank=5 scaffold_6 . CDS 173996 174319 . + 0 ID=Phyra51479;Parent=Phyra51479;rank=6 scaffold_6 . exon 173996 174319 . + . ID=Phyra51479.6;Parent=Phyra51479;constitutive=1;rank=6 scaffold_6 . CDS 174387 174719 . + 0 ID=Phyra51479;Parent=Phyra51479;rank=7 scaffold_6 . exon 174387 174719 . + . ID=Phyra51479.7;Parent=Phyra51479;constitutive=1;rank=7 scaffold_6 . repeat_region 179153 179202 . ? . description=dust scaffold_6 . repeat_region 185996 186537 . ? . description=dust scaffold_6 ensembl protein_coding_gene 179202 181840 . + . ID=Phyra51480;biotype=protein_coding;external_name=gwEuk.6.172.1;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 179202 181840 . + . ID=Phyra51480;Parent=Phyra51480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 179202 179742 . + 0 ID=Phyra51480;Parent=Phyra51480;rank=1 scaffold_6 . exon 179202 179742 . + . ID=Phyra51480.1;Parent=Phyra51480;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 179816 180015 . + 0 ID=Phyra51480;Parent=Phyra51480;rank=2 scaffold_6 . exon 179816 180015 . + . ID=Phyra51480.2;Parent=Phyra51480;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 180090 180521 . + 0 ID=Phyra51480;Parent=Phyra51480;rank=3 scaffold_6 . exon 180090 180521 . + . ID=Phyra51480.3;Parent=Phyra51480;constitutive=1;rank=3 scaffold_6 . CDS 180598 180729 . + 0 ID=Phyra51480;Parent=Phyra51480;rank=4 scaffold_6 . exon 180598 180729 . + . ID=Phyra51480.4;Parent=Phyra51480;constitutive=1;rank=4 scaffold_6 . CDS 180804 180956 . + 0 ID=Phyra51480;Parent=Phyra51480;rank=5 scaffold_6 . exon 180804 180956 . + . ID=Phyra51480.5;Parent=Phyra51480;constitutive=1;rank=5 scaffold_6 . CDS 181024 181347 . + 0 ID=Phyra51480;Parent=Phyra51480;rank=6 scaffold_6 . exon 181024 181347 . + . ID=Phyra51480.6;Parent=Phyra51480;constitutive=1;rank=6 scaffold_6 . CDS 181415 181840 . + 0 ID=Phyra51480;Parent=Phyra51480;rank=7 scaffold_6 . exon 181415 181840 . + . ID=Phyra51480.7;Parent=Phyra51480;constitutive=1;rank=7 scaffold_6 ensembl protein_coding_gene 182392 183424 . - . ID=Phyra74072;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000055;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 182392 183424 . - . ID=Phyra74072;Parent=Phyra74072;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 182392 182579 . - 0 ID=Phyra74072;Parent=Phyra74072;rank=3 scaffold_6 . exon 182392 182579 . - . ID=Phyra74072.3;Parent=Phyra74072;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 182752 182887 . - 0 ID=Phyra74072;Parent=Phyra74072;rank=2 scaffold_6 . exon 182752 182887 . - . ID=Phyra74072.2;Parent=Phyra74072;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 182936 183424 . - 0 ID=Phyra74072;Parent=Phyra74072;rank=1 scaffold_6 . exon 182936 183424 . - . ID=Phyra74072.1;Parent=Phyra74072;constitutive=1;rank=1 scaffold_6 . repeat_region 197137 197348 . + . description=Sola3-2_PS scaffold_6 ensembl protein_coding_gene 192541 193551 . + . ID=Phyra74073;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000056;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 192541 193551 . + . ID=Phyra74073;Parent=Phyra74073;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 192541 193551 . + 0 ID=Phyra74073;Parent=Phyra74073;rank=1 scaffold_6 . exon 192541 193551 . + . ID=Phyra74073.1;Parent=Phyra74073;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 196041 197990 . + . ID=Phyra74074;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000057;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 196041 197990 . + . ID=Phyra74074;Parent=Phyra74074;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 196041 197990 . + 0 ID=Phyra74074;Parent=Phyra74074;rank=1 scaffold_6 . exon 196041 197990 . + . ID=Phyra74074.1;Parent=Phyra74074;constitutive=1;rank=1 scaffold_6 . repeat_region 200701 200775 . ? . description=trf scaffold_6 ensembl protein_coding_gene 206998 207609 . - . ID=Phyra74075;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000058;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 206998 207609 . - . ID=Phyra74075;Parent=Phyra74075;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 206998 207609 . - 0 ID=Phyra74075;Parent=Phyra74075;rank=1 scaffold_6 . exon 206998 207609 . - . ID=Phyra74075.1;Parent=Phyra74075;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 209719 214723 . + . ID=Phyra74076;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000059;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 209719 214723 . + . ID=Phyra74076;Parent=Phyra74076;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 209719 210448 . + 0 ID=Phyra74076;Parent=Phyra74076;rank=1 scaffold_6 . exon 209719 210448 . + . ID=Phyra74076.1;Parent=Phyra74076;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 210511 210727 . + 0 ID=Phyra74076;Parent=Phyra74076;rank=2 scaffold_6 . exon 210511 210727 . + . ID=Phyra74076.2;Parent=Phyra74076;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 210797 210885 . + 0 ID=Phyra74076;Parent=Phyra74076;rank=3 scaffold_6 . exon 210797 210885 . + . ID=Phyra74076.3;Parent=Phyra74076;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 210960 211036 . + 0 ID=Phyra74076;Parent=Phyra74076;rank=4 scaffold_6 . exon 210960 211036 . + . ID=Phyra74076.4;Parent=Phyra74076;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 211120 211205 . + 0 ID=Phyra74076;Parent=Phyra74076;rank=5 scaffold_6 . exon 211120 211205 . + . ID=Phyra74076.5;Parent=Phyra74076;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_6 . CDS 211434 211474 . + 0 ID=Phyra74076;Parent=Phyra74076;rank=6 scaffold_6 . exon 211434 211474 . + . ID=Phyra74076.6;Parent=Phyra74076;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_6 . CDS 211905 214723 . + 0 ID=Phyra74076;Parent=Phyra74076;rank=7 scaffold_6 . exon 211905 214723 . + . ID=Phyra74076.7;Parent=Phyra74076;constitutive=1;ensembl_phase=1;rank=7 scaffold_6 ensembl protein_coding_gene 214887 216205 . + . ID=Phyra74077;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000060;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 214887 216205 . + . ID=Phyra74077;Parent=Phyra74077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 214887 214988 . + 0 ID=Phyra74077;Parent=Phyra74077;rank=1 scaffold_6 . exon 214887 214988 . + . ID=Phyra74077.1;Parent=Phyra74077;constitutive=1;rank=1 scaffold_6 . CDS 215113 215238 . + 0 ID=Phyra74077;Parent=Phyra74077;rank=2 scaffold_6 . exon 215113 215238 . + . ID=Phyra74077.2;Parent=Phyra74077;constitutive=1;rank=2 scaffold_6 . CDS 215312 215381 . + 0 ID=Phyra74077;Parent=Phyra74077;rank=3 scaffold_6 . exon 215312 215381 . + . ID=Phyra74077.3;Parent=Phyra74077;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 215452 215507 . + 0 ID=Phyra74077;Parent=Phyra74077;rank=4 scaffold_6 . exon 215452 215507 . + . ID=Phyra74077.4;Parent=Phyra74077;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 215588 215664 . + 0 ID=Phyra74077;Parent=Phyra74077;rank=5 scaffold_6 . exon 215588 215664 . + . ID=Phyra74077.5;Parent=Phyra74077;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_6 . CDS 215733 216000 . + 0 ID=Phyra74077;Parent=Phyra74077;rank=6 scaffold_6 . exon 215733 216000 . + . ID=Phyra74077.6;Parent=Phyra74077;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . CDS 216080 216205 . + 0 ID=Phyra74077;Parent=Phyra74077;rank=7 scaffold_6 . exon 216080 216205 . + . ID=Phyra74077.7;Parent=Phyra74077;constitutive=1;rank=7 scaffold_6 ensembl protein_coding_gene 216691 221922 . - . ID=Phyra74078;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000061;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 216691 221922 . - . ID=Phyra74078;Parent=Phyra74078;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 216691 217223 . - 0 ID=Phyra74078;Parent=Phyra74078;rank=3 scaffold_6 . exon 216691 217223 . - . ID=Phyra74078.3;Parent=Phyra74078;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 217416 218946 . - 0 ID=Phyra74078;Parent=Phyra74078;rank=2 scaffold_6 . CDS 219025 221922 . - 0 ID=Phyra74078;Parent=Phyra74078;rank=1 scaffold_6 . biological_region 220330 220330 0.999 - . logic_name=eponine scaffold_6 . repeat_region 224843 224924 . - . description=Sola3-2_PS scaffold_6 . biological_region 225141 225143 0.999 - . logic_name=eponine scaffold_6 . biological_region 226661 226662 0.999 + . logic_name=eponine scaffold_6 . exon 217416 218946 . - . ID=Phyra74078.2;Parent=Phyra74078;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . exon 219025 221922 . - . ID=Phyra74078.1;Parent=Phyra74078;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 224213 225997 . - . ID=Phyra74079;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000062;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 224213 225997 . - . ID=Phyra74079;Parent=Phyra74079;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 224213 225997 . - 0 ID=Phyra74079;Parent=Phyra74079;rank=1 scaffold_6 . exon 224213 225997 . - . ID=Phyra74079.1;Parent=Phyra74079;constitutive=1;rank=1 scaffold_6 . repeat_region 231723 231758 . ? . description=trf scaffold_6 ensembl protein_coding_gene 227620 229517 . - . ID=Phyra74080;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000063;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 227620 229517 . - . ID=Phyra74080;Parent=Phyra74080;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 227620 228813 . - 0 ID=Phyra74080;Parent=Phyra74080;rank=2 scaffold_6 . exon 227620 228813 . - . ID=Phyra74080.2;Parent=Phyra74080;constitutive=1;rank=2 scaffold_6 . CDS 228852 229517 . - 0 ID=Phyra74080;Parent=Phyra74080;rank=1 scaffold_6 . exon 228852 229517 . - . ID=Phyra74080.1;Parent=Phyra74080;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 232344 235169 . + . ID=Phyra74081;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000064;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 232344 235169 . + . ID=Phyra74081;Parent=Phyra74081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 232344 235169 . + 0 ID=Phyra74081;Parent=Phyra74081;rank=1 scaffold_6 . exon 232344 235169 . + . ID=Phyra74081.1;Parent=Phyra74081;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 235251 237026 . - . ID=Phyra74082;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000065;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 235251 237026 . - . ID=Phyra74082;Parent=Phyra74082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 235251 237026 . - 0 ID=Phyra74082;Parent=Phyra74082;rank=1 scaffold_6 . exon 235251 237026 . - . ID=Phyra74082.1;Parent=Phyra74082;constitutive=1;rank=1 scaffold_6 . repeat_region 239087 239094 . ? . description=dust scaffold_6 . repeat_region 239660 239709 . ? . description=dust scaffold_6 . biological_region 242183 242183 0.999 - . logic_name=eponine scaffold_6 . repeat_region 245056 245612 . - . description=Sola3-2_PS scaffold_6 . biological_region 245172 245175 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 239974 240261 . - . ID=Phyra51311;biotype=protein_coding;external_name=gwEuk.6.3.1;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 239974 240261 . - . ID=Phyra51311;Parent=Phyra51311;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 239974 240261 . - 0 ID=Phyra51311;Parent=Phyra51311;rank=1 scaffold_6 . exon 239974 240261 . - . ID=Phyra51311.1;Parent=Phyra51311;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 240759 242616 . - . ID=Phyra74083;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000066;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 240759 242616 . - . ID=Phyra74083;Parent=Phyra74083;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 240759 240772 . - 0 ID=Phyra74083;Parent=Phyra74083;rank=2 scaffold_6 . exon 240759 240772 . - . ID=Phyra74083.2;Parent=Phyra74083;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 240849 242616 . - 0 ID=Phyra74083;Parent=Phyra74083;rank=1 scaffold_6 . exon 240849 242616 . - . ID=Phyra74083.1;Parent=Phyra74083;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 244414 246264 . - . ID=Phyra74084;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000067;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 244414 246264 . - . ID=Phyra74084;Parent=Phyra74084;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 244414 246264 . - 0 ID=Phyra74084;Parent=Phyra74084;rank=1 scaffold_6 . exon 244414 246264 . - . ID=Phyra74084.1;Parent=Phyra74084;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 247445 247824 . + . ID=Phyra74085;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000068;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 247445 247824 . + . ID=Phyra74085;Parent=Phyra74085;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 247445 247697 . + 0 ID=Phyra74085;Parent=Phyra74085;rank=1 scaffold_6 . exon 247445 247697 . + . ID=Phyra74085.1;Parent=Phyra74085;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 247772 247824 . + 0 ID=Phyra74085;Parent=Phyra74085;rank=2 scaffold_6 . exon 247772 247824 . + . ID=Phyra74085.2;Parent=Phyra74085;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 ensembl protein_coding_gene 247947 249722 . - . ID=Phyra74086;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000069;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 247947 249722 . - . ID=Phyra74086;Parent=Phyra74086;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 247947 248096 . - 0 ID=Phyra74086;Parent=Phyra74086;rank=2 scaffold_6 . exon 247947 248096 . - . ID=Phyra74086.2;Parent=Phyra74086;constitutive=1;rank=2 scaffold_6 . CDS 248166 249722 . - 0 ID=Phyra74086;Parent=Phyra74086;rank=1 scaffold_6 . exon 248166 249722 . - . ID=Phyra74086.1;Parent=Phyra74086;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 252510 253922 . + . ID=Phyra74087;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000070;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 252510 253922 . + . ID=Phyra74087;Parent=Phyra74087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 252510 253922 . + 0 ID=Phyra74087;Parent=Phyra74087;rank=1 scaffold_6 . exon 252510 253922 . + . ID=Phyra74087.1;Parent=Phyra74087;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 254445 255209 . + . ID=Phyra74088;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000071;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 254445 255209 . + . ID=Phyra74088;Parent=Phyra74088;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 254445 255209 . + 0 ID=Phyra74088;Parent=Phyra74088;rank=1 scaffold_6 . exon 254445 255209 . + . ID=Phyra74088.1;Parent=Phyra74088;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 256013 257914 . - . ID=Phyra74089;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000072;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 256013 257914 . - . ID=Phyra74089;Parent=Phyra74089;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 256013 257914 . - 0 ID=Phyra74089;Parent=Phyra74089;rank=1 scaffold_6 . exon 256013 257914 . - . ID=Phyra74089.1;Parent=Phyra74089;constitutive=1;rank=1 scaffold_6 . repeat_region 256649 256955 . - . description=Sola3-2_PS scaffold_6 . biological_region 260642 260644 0.999 + . logic_name=eponine scaffold_6 . biological_region 260701 260704 0.999 - . logic_name=eponine scaffold_6 . biological_region 264158 264161 0.999 - . logic_name=eponine scaffold_6 . biological_region 264339 264343 0.999 + . logic_name=eponine scaffold_6 . biological_region 264411 264413 0.999 - . logic_name=eponine scaffold_6 . biological_region 264427 264431 0.999 - . logic_name=eponine scaffold_6 . biological_region 264485 264487 0.999 + . logic_name=eponine scaffold_6 . biological_region 264532 264536 0.999 - . logic_name=eponine scaffold_6 . biological_region 264650 264653 0.999 - . logic_name=eponine scaffold_6 . repeat_region 265773 266275 . - . description=Sola3-2_PS scaffold_6 . repeat_region 266682 266817 . ? . description=trf scaffold_6 ensembl protein_coding_gene 263784 264611 . - . ID=Phyra74090;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000073;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 263784 264611 . - . ID=Phyra74090;Parent=Phyra74090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 263784 264611 . - 0 ID=Phyra74090;Parent=Phyra74090;rank=1 scaffold_6 . exon 263784 264611 . - . ID=Phyra74090.1;Parent=Phyra74090;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 265134 266906 . - . ID=Phyra74091;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000074;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 265134 266906 . - . ID=Phyra74091;Parent=Phyra74091;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 265134 266906 . - 0 ID=Phyra74091;Parent=Phyra74091;rank=1 scaffold_6 . exon 265134 266906 . - . ID=Phyra74091.1;Parent=Phyra74091;constitutive=1;rank=1 scaffold_6 . repeat_region 267865 267872 . ? . description=dust scaffold_6 . repeat_region 269007 269019 . ? . description=dust scaffold_6 . repeat_region 270527 270540 . ? . description=dust scaffold_6 . repeat_region 271523 271530 . ? . description=dust scaffold_6 ensembl protein_coding_gene 271630 273324 . + . ID=Phyra74092;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000075;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 271630 273324 . + . ID=Phyra74092;Parent=Phyra74092;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 271630 272179 . + 0 ID=Phyra74092;Parent=Phyra74092;rank=1 scaffold_6 . exon 271630 272179 . + . ID=Phyra74092.1;Parent=Phyra74092;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 272242 272345 . + 0 ID=Phyra74092;Parent=Phyra74092;rank=2 scaffold_6 . exon 272242 272345 . + . ID=Phyra74092.2;Parent=Phyra74092;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 272409 272555 . + 0 ID=Phyra74092;Parent=Phyra74092;rank=3 scaffold_6 . exon 272409 272555 . + . ID=Phyra74092.3;Parent=Phyra74092;constitutive=1;rank=3 scaffold_6 . CDS 272633 272793 . + 0 ID=Phyra74092;Parent=Phyra74092;rank=4 scaffold_6 . exon 272633 272793 . + . ID=Phyra74092.4;Parent=Phyra74092;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . CDS 272866 272990 . + 0 ID=Phyra74092;Parent=Phyra74092;rank=5 scaffold_6 . exon 272866 272990 . + . ID=Phyra74092.5;Parent=Phyra74092;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 273065 273324 . + 0 ID=Phyra74092;Parent=Phyra74092;rank=6 scaffold_6 . exon 273065 273324 . + . ID=Phyra74092.6;Parent=Phyra74092;constitutive=1;ensembl_phase=1;rank=6 scaffold_6 . repeat_region 281671 281715 . ? . description=trf scaffold_6 ensembl protein_coding_gene 277181 278995 . + . ID=Phyra74093;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000076;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 277181 278995 . + . ID=Phyra74093;Parent=Phyra74093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 277181 278995 . + 0 ID=Phyra74093;Parent=Phyra74093;rank=1 scaffold_6 . exon 277181 278995 . + . ID=Phyra74093.1;Parent=Phyra74093;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 284815 286695 . - . ID=Phyra74094;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000077;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 284815 286695 . - . ID=Phyra74094;Parent=Phyra74094;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 284815 286695 . - 0 ID=Phyra74094;Parent=Phyra74094;rank=1 scaffold_6 . exon 284815 286695 . - . ID=Phyra74094.1;Parent=Phyra74094;constitutive=1;rank=1 scaffold_6 . repeat_region 291915 291926 . ? . description=dust scaffold_6 . repeat_region 293776 293783 . ? . description=dust scaffold_6 . repeat_region 294562 294576 . ? . description=dust scaffold_6 . repeat_region 295954 295962 . ? . description=dust scaffold_6 ensembl protein_coding_gene 296194 299595 . + . ID=Phyra74095;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000078;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 296194 299595 . + . ID=Phyra74095;Parent=Phyra74095;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 296194 299595 . + 0 ID=Phyra74095;Parent=Phyra74095;rank=1 scaffold_6 . exon 296194 299595 . + . ID=Phyra74095.1;Parent=Phyra74095;constitutive=1;rank=1 scaffold_6 . biological_region 297482 297485 0.999 - . logic_name=eponine scaffold_6 . biological_region 302455 302460 0.999 - . logic_name=eponine scaffold_6 . repeat_region 303290 303319 . ? . description=trf scaffold_6 . biological_region 304759 304759 0.999 + . logic_name=eponine scaffold_6 . repeat_region 304845 304874 . ? . description=trf scaffold_6 . biological_region 305037 305045 0.999 - . logic_name=eponine scaffold_6 . biological_region 305305 305307 0.999 - . logic_name=eponine scaffold_6 . biological_region 305410 305412 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 300740 302457 . - . ID=Phyra74096;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000079;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 300740 302457 . - . ID=Phyra74096;Parent=Phyra74096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 300740 301078 . - 0 ID=Phyra74096;Parent=Phyra74096;rank=4 scaffold_6 . exon 300740 301078 . - . ID=Phyra74096.4;Parent=Phyra74096;constitutive=1;rank=4 scaffold_6 . CDS 301148 301380 . - 0 ID=Phyra74096;Parent=Phyra74096;rank=3 scaffold_6 . exon 301148 301380 . - . ID=Phyra74096.3;Parent=Phyra74096;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 301444 301522 . - 0 ID=Phyra74096;Parent=Phyra74096;rank=2 scaffold_6 . exon 301444 301522 . - . ID=Phyra74096.2;Parent=Phyra74096;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 301588 302457 . - 0 ID=Phyra74096;Parent=Phyra74096;rank=1 scaffold_6 . exon 301588 302457 . - . ID=Phyra74096.1;Parent=Phyra74096;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 302705 303283 . - . ID=Phyra74097;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000080;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 302705 303283 . - . ID=Phyra74097;Parent=Phyra74097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 302705 303283 . - 0 ID=Phyra74097;Parent=Phyra74097;rank=1 scaffold_6 . exon 302705 303283 . - . ID=Phyra74097.1;Parent=Phyra74097;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 303947 304418 . - . ID=Phyra74098;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000081;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 303947 304418 . - . ID=Phyra74098;Parent=Phyra74098;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 303947 304009 . - 0 ID=Phyra74098;Parent=Phyra74098;rank=2 scaffold_6 . exon 303947 304009 . - . ID=Phyra74098.2;Parent=Phyra74098;constitutive=1;rank=2 scaffold_6 . CDS 304089 304418 . - 0 ID=Phyra74098;Parent=Phyra74098;rank=1 scaffold_6 . exon 304089 304418 . - . ID=Phyra74098.1;Parent=Phyra74098;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 304728 305030 . - . ID=Phyra74099;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000082;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 304728 305030 . - . ID=Phyra74099;Parent=Phyra74099;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 304728 305030 . - 0 ID=Phyra74099;Parent=Phyra74099;rank=1 scaffold_6 . exon 304728 305030 . - . ID=Phyra74099.1;Parent=Phyra74099;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 305196 306048 . + . ID=Phyra74100;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000083;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 305196 306048 . + . ID=Phyra74100;Parent=Phyra74100;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 305196 305538 . + 0 ID=Phyra74100;Parent=Phyra74100;rank=1 scaffold_6 . exon 305196 305538 . + . ID=Phyra74100.1;Parent=Phyra74100;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 305607 305835 . + 0 ID=Phyra74100;Parent=Phyra74100;rank=2 scaffold_6 . exon 305607 305835 . + . ID=Phyra74100.2;Parent=Phyra74100;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 305898 306048 . + 0 ID=Phyra74100;Parent=Phyra74100;rank=3 scaffold_6 . exon 305898 306048 . + . ID=Phyra74100.3;Parent=Phyra74100;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . repeat_region 314984 314994 . ? . description=dust scaffold_6 ensembl protein_coding_gene 310141 310878 . - . ID=Phyra74101;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000084;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 310141 310878 . - . ID=Phyra74101;Parent=Phyra74101;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 310141 310470 . - 0 ID=Phyra74101;Parent=Phyra74101;rank=2 scaffold_6 . exon 310141 310470 . - . ID=Phyra74101.2;Parent=Phyra74101;constitutive=1;rank=2 scaffold_6 . CDS 310534 310878 . - 0 ID=Phyra74101;Parent=Phyra74101;rank=1 scaffold_6 . exon 310534 310878 . - . ID=Phyra74101.1;Parent=Phyra74101;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 311128 311848 . - . ID=Phyra74102;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000085;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 311128 311848 . - . ID=Phyra74102;Parent=Phyra74102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 311128 311289 . - 0 ID=Phyra74102;Parent=Phyra74102;rank=3 scaffold_6 . exon 311128 311289 . - . ID=Phyra74102.3;Parent=Phyra74102;constitutive=1;rank=3 scaffold_6 . CDS 311384 311431 . - 0 ID=Phyra74102;Parent=Phyra74102;rank=2 scaffold_6 . exon 311384 311431 . - . ID=Phyra74102.2;Parent=Phyra74102;constitutive=1;rank=2 scaffold_6 . CDS 311504 311848 . - 0 ID=Phyra74102;Parent=Phyra74102;rank=1 scaffold_6 . exon 311504 311848 . - . ID=Phyra74102.1;Parent=Phyra74102;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 312014 316916 . + . ID=Phyra74103;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000086;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 312014 316916 . + . ID=Phyra74103;Parent=Phyra74103;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 312014 314830 . + 0 ID=Phyra74103;Parent=Phyra74103;rank=1 scaffold_6 . exon 312014 314830 . + . ID=Phyra74103.1;Parent=Phyra74103;constitutive=1;rank=1 scaffold_6 . CDS 314906 316774 . + 0 ID=Phyra74103;Parent=Phyra74103;rank=2 scaffold_6 . exon 314906 316774 . + . ID=Phyra74103.2;Parent=Phyra74103;constitutive=1;rank=2 scaffold_6 . CDS 316854 316916 . + 0 ID=Phyra74103;Parent=Phyra74103;rank=3 scaffold_6 . exon 316854 316916 . + . ID=Phyra74103.3;Parent=Phyra74103;constitutive=1;rank=3 scaffold_6 ensembl protein_coding_gene 320522 323846 . + . ID=Phyra74104;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000087;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 320522 323846 . + . ID=Phyra74104;Parent=Phyra74104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 320522 320979 . + 0 ID=Phyra74104;Parent=Phyra74104;rank=1 scaffold_6 . exon 320522 320979 . + . ID=Phyra74104.1;Parent=Phyra74104;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 321050 323144 . + 0 ID=Phyra74104;Parent=Phyra74104;rank=2 scaffold_6 . exon 321050 323144 . + . ID=Phyra74104.2;Parent=Phyra74104;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 323202 323846 . + 0 ID=Phyra74104;Parent=Phyra74104;rank=3 scaffold_6 . exon 323202 323846 . + . ID=Phyra74104.3;Parent=Phyra74104;constitutive=1;rank=3 scaffold_6 ensembl protein_coding_gene 324456 325418 . - . ID=Phyra74105;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000088;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 324456 325418 . - . ID=Phyra74105;Parent=Phyra74105;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 324456 324860 . - 0 ID=Phyra74105;Parent=Phyra74105;rank=3 scaffold_6 . exon 324456 324860 . - . ID=Phyra74105.3;Parent=Phyra74105;constitutive=1;rank=3 scaffold_6 . CDS 324935 325175 . - 0 ID=Phyra74105;Parent=Phyra74105;rank=2 scaffold_6 . exon 324935 325175 . - . ID=Phyra74105.2;Parent=Phyra74105;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 325264 325418 . - 0 ID=Phyra74105;Parent=Phyra74105;rank=1 scaffold_6 . exon 325264 325418 . - . ID=Phyra74105.1;Parent=Phyra74105;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 325987 326661 . - . ID=Phyra74106;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000089;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 325987 326661 . - . ID=Phyra74106;Parent=Phyra74106;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 325987 326661 . - 0 ID=Phyra74106;Parent=Phyra74106;rank=1 scaffold_6 . exon 325987 326661 . - . ID=Phyra74106.1;Parent=Phyra74106;constitutive=1;rank=1 scaffold_6 . repeat_region 326336 326541 . ? . description=trf scaffold_6 . repeat_region 330813 330856 . ? . description=trf scaffold_6 . biological_region 331252 331258 0.999 - . logic_name=eponine scaffold_6 . repeat_region 335396 343807 . ? . description=dust scaffold_6 ensembl protein_coding_gene 330905 335215 . + . ID=Phyra74107;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000090;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 330905 335215 . + . ID=Phyra74107;Parent=Phyra74107;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 330905 335215 . + 0 ID=Phyra74107;Parent=Phyra74107;rank=1 scaffold_6 . exon 330905 335215 . + . ID=Phyra74107.1;Parent=Phyra74107;constitutive=1;rank=1 scaffold_6 . repeat_region 352642 352652 . ? . description=dust scaffold_6 . repeat_region 353065 358710 . ? . description=dust scaffold_6 ensembl protein_coding_gene 350007 350957 . + . ID=Phyra74108;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000091;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 350007 350957 . + . ID=Phyra74108;Parent=Phyra74108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 350007 350957 . + 0 ID=Phyra74108;Parent=Phyra74108;rank=1 scaffold_6 . exon 350007 350957 . + . ID=Phyra74108.1;Parent=Phyra74108;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 358746 361972 . - . ID=Phyra74109;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000092;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 358746 361972 . - . ID=Phyra74109;Parent=Phyra74109;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 358746 358762 . - 0 ID=Phyra74109;Parent=Phyra74109;rank=2 scaffold_6 . exon 358746 358762 . - . ID=Phyra74109.2;Parent=Phyra74109;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 358939 361972 . - 0 ID=Phyra74109;Parent=Phyra74109;rank=1 scaffold_6 . exon 358939 361972 . - . ID=Phyra74109.1;Parent=Phyra74109;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 362784 365318 . - . ID=Phyra74110;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000093;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 362784 365318 . - . ID=Phyra74110;Parent=Phyra74110;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 362784 365318 . - 0 ID=Phyra74110;Parent=Phyra74110;rank=1 scaffold_6 . exon 362784 365318 . - . ID=Phyra74110.1;Parent=Phyra74110;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 365594 367223 . + . ID=Phyra74111;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000094;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 365594 367223 . + . ID=Phyra74111;Parent=Phyra74111;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 365594 365639 . + 0 ID=Phyra74111;Parent=Phyra74111;rank=1 scaffold_6 . exon 365594 365639 . + . ID=Phyra74111.1;Parent=Phyra74111;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 365781 366438 . + 0 ID=Phyra74111;Parent=Phyra74111;rank=2 scaffold_6 . exon 365781 366438 . + . ID=Phyra74111.2;Parent=Phyra74111;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 366503 367223 . + 0 ID=Phyra74111;Parent=Phyra74111;rank=3 scaffold_6 . exon 366503 367223 . + . ID=Phyra74111.3;Parent=Phyra74111;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 ensembl protein_coding_gene 374768 376040 . - . ID=Phyra74112;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000095;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 374768 376040 . - . ID=Phyra74112;Parent=Phyra74112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 374768 374772 . - 0 ID=Phyra74112;Parent=Phyra74112;rank=2 scaffold_6 . exon 374768 374772 . - . ID=Phyra74112.2;Parent=Phyra74112;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 374879 376040 . - 0 ID=Phyra74112;Parent=Phyra74112;rank=1 scaffold_6 . exon 374879 376040 . - . ID=Phyra74112.1;Parent=Phyra74112;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . biological_region 375737 375744 0.999 + . logic_name=eponine scaffold_6 . biological_region 375760 375766 0.999 + . logic_name=eponine scaffold_6 . biological_region 375795 375805 0.999 + . logic_name=eponine scaffold_6 . biological_region 375834 375842 0.999 - . logic_name=eponine scaffold_6 . biological_region 377605 377605 0.999 - . logic_name=eponine scaffold_6 . biological_region 382562 382564 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 376745 380954 . + . ID=Phyra74113;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000096;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 376745 380954 . + . ID=Phyra74113;Parent=Phyra74113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 376745 377093 . + 0 ID=Phyra74113;Parent=Phyra74113;rank=1 scaffold_6 . exon 376745 377093 . + . ID=Phyra74113.1;Parent=Phyra74113;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 377164 377384 . + 0 ID=Phyra74113;Parent=Phyra74113;rank=2 scaffold_6 . exon 377164 377384 . + . ID=Phyra74113.2;Parent=Phyra74113;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 377455 377655 . + 0 ID=Phyra74113;Parent=Phyra74113;rank=3 scaffold_6 . exon 377455 377655 . + . ID=Phyra74113.3;Parent=Phyra74113;constitutive=1;rank=3 scaffold_6 . CDS 377748 377909 . + 0 ID=Phyra74113;Parent=Phyra74113;rank=4 scaffold_6 . exon 377748 377909 . + . ID=Phyra74113.4;Parent=Phyra74113;constitutive=1;rank=4 scaffold_6 . CDS 377996 378586 . + 0 ID=Phyra74113;Parent=Phyra74113;rank=5 scaffold_6 . exon 377996 378586 . + . ID=Phyra74113.5;Parent=Phyra74113;constitutive=1;rank=5 scaffold_6 . CDS 378832 379358 . + 0 ID=Phyra74113;Parent=Phyra74113;rank=6 scaffold_6 . exon 378832 379358 . + . ID=Phyra74113.6;Parent=Phyra74113;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_6 . CDS 379419 379575 . + 0 ID=Phyra74113;Parent=Phyra74113;rank=7 scaffold_6 . exon 379419 379575 . + . ID=Phyra74113.7;Parent=Phyra74113;constitutive=1;ensembl_phase=2;rank=7 scaffold_6 . CDS 379648 380070 . + 0 ID=Phyra74113;Parent=Phyra74113;rank=8 scaffold_6 . exon 379648 380070 . + . ID=Phyra74113.8;Parent=Phyra74113;constitutive=1;rank=8 scaffold_6 . CDS 380144 380223 . + 0 ID=Phyra74113;Parent=Phyra74113;rank=9 scaffold_6 . exon 380144 380223 . + . ID=Phyra74113.9;Parent=Phyra74113;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_6 . CDS 380291 380376 . + 0 ID=Phyra74113;Parent=Phyra74113;rank=10 scaffold_6 . exon 380291 380376 . + . ID=Phyra74113.10;Parent=Phyra74113;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_6 . CDS 380444 380760 . + 0 ID=Phyra74113;Parent=Phyra74113;rank=11 scaffold_6 . exon 380444 380760 . + . ID=Phyra74113.11;Parent=Phyra74113;constitutive=1;ensembl_phase=1;rank=11 scaffold_6 . CDS 380835 380954 . + 0 ID=Phyra74113;Parent=Phyra74113;rank=12 scaffold_6 . exon 380835 380954 . + . ID=Phyra74113.12;Parent=Phyra74113;constitutive=1;rank=12 scaffold_6 ensembl protein_coding_gene 381084 381706 . - . ID=Phyra74114;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000097;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 381084 381706 . - . ID=Phyra74114;Parent=Phyra74114;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 381084 381152 . - 0 ID=Phyra74114;Parent=Phyra74114;rank=3 scaffold_6 . exon 381084 381152 . - . ID=Phyra74114.3;Parent=Phyra74114;constitutive=1;rank=3 scaffold_6 . CDS 381357 381510 . - 0 ID=Phyra74114;Parent=Phyra74114;rank=2 scaffold_6 . exon 381357 381510 . - . ID=Phyra74114.2;Parent=Phyra74114;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 381564 381706 . - 0 ID=Phyra74114;Parent=Phyra74114;rank=1 scaffold_6 . exon 381564 381706 . - . ID=Phyra74114.1;Parent=Phyra74114;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 382256 383359 . - . ID=Phyra74115;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000098;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 382256 383359 . - . ID=Phyra74115;Parent=Phyra74115;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 382256 383359 . - 0 ID=Phyra74115;Parent=Phyra74115;rank=1 scaffold_6 . exon 382256 383359 . - . ID=Phyra74115.1;Parent=Phyra74115;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 383597 386410 . - . ID=Phyra74116;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000099;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 383597 386410 . - . ID=Phyra74116;Parent=Phyra74116;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 383597 386410 . - 0 ID=Phyra74116;Parent=Phyra74116;rank=1 scaffold_6 . exon 383597 386410 . - . ID=Phyra74116.1;Parent=Phyra74116;constitutive=1;rank=1 scaffold_6 . repeat_region 386551 386558 . ? . description=dust scaffold_6 . repeat_region 387778 387896 . ? . description=trf scaffold_6 . repeat_region 388279 388305 . ? . description=trf scaffold_6 ensembl protein_coding_gene 394455 403391 . - . ID=Phyra51337;biotype=protein_coding;external_name=gwEuk.6.29.1;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 394455 403391 . - . ID=Phyra51337;Parent=Phyra51337;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 394455 402829 . - 0 ID=Phyra51337;Parent=Phyra51337;rank=2 scaffold_6 . exon 394455 402829 . - . ID=Phyra51337.2;Parent=Phyra51337;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 403070 403391 . - 0 ID=Phyra51337;Parent=Phyra51337;rank=1 scaffold_6 ensembl protein_coding_gene 392090 392875 . + . ID=Phyra71169;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_6000003;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 392090 392875 . + . ID=Phyra71169;Parent=Phyra71169;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 392090 392875 . + 0 ID=Phyra71169;Parent=Phyra71169;rank=1 scaffold_6 . exon 392090 392875 . + . ID=Phyra71169.1;Parent=Phyra71169;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 386565 388736 . - . ID=Phyra74117;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000100;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 386565 388736 . - . ID=Phyra74117;Parent=Phyra74117;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 386565 388361 . - 0 ID=Phyra74117;Parent=Phyra74117;rank=2 scaffold_6 . exon 386565 388361 . - . ID=Phyra74117.2;Parent=Phyra74117;constitutive=1;rank=2 scaffold_6 . CDS 388605 388736 . - 0 ID=Phyra74117;Parent=Phyra74117;rank=1 scaffold_6 . exon 388605 388736 . - . ID=Phyra74117.1;Parent=Phyra74117;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 393671 394298 . + . ID=Phyra74119;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000102;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 393671 394298 . + . ID=Phyra74119;Parent=Phyra74119;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 393671 394222 . + 0 ID=Phyra74119;Parent=Phyra74119;rank=1 scaffold_6 . exon 393671 394222 . + . ID=Phyra74119.1;Parent=Phyra74119;constitutive=1;rank=1 scaffold_6 . CDS 394279 394298 . + 0 ID=Phyra74119;Parent=Phyra74119;rank=2 scaffold_6 . exon 394279 394298 . + . ID=Phyra74119.2;Parent=Phyra74119;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . exon 403070 403391 . - . ID=Phyra51337.1;Parent=Phyra51337;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . repeat_region 406828 406840 . ? . description=dust scaffold_6 . biological_region 407135 407138 0.999 + . logic_name=eponine scaffold_6 . repeat_region 409458 409465 . ? . description=dust scaffold_6 . biological_region 410157 410163 0.999 + . logic_name=eponine scaffold_6 . repeat_region 410270 410316 . ? . description=trf scaffold_6 . repeat_region 410373 410611 . ? . description=trf scaffold_6 . repeat_region 410373 410611 . ? . description=trf scaffold_6 . repeat_region 410564 410666 . ? . description=trf scaffold_6 . repeat_region 410595 410623 . ? . description=trf scaffold_6 . biological_region 411071 411072 0.999 - . logic_name=eponine scaffold_6 . repeat_region 411795 411802 . ? . description=dust scaffold_6 . repeat_region 413399 413429 . ? . description=dust scaffold_6 . repeat_region 414572 414780 . ? . description=trf scaffold_6 ensembl protein_coding_gene 410072 413658 . - . ID=Phyra74122;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000105;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 410072 413658 . - . ID=Phyra74122;Parent=Phyra74122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 410072 410719 . - 0 ID=Phyra74122;Parent=Phyra74122;rank=6 scaffold_6 . exon 410072 410719 . - . ID=Phyra74122.6;Parent=Phyra74122;constitutive=1;rank=6 scaffold_6 . CDS 411055 411180 . - 0 ID=Phyra74122;Parent=Phyra74122;rank=5 scaffold_6 . exon 411055 411180 . - . ID=Phyra74122.5;Parent=Phyra74122;constitutive=1;rank=5 scaffold_6 . CDS 411259 411527 . - 0 ID=Phyra74122;Parent=Phyra74122;rank=4 scaffold_6 . exon 411259 411527 . - . ID=Phyra74122.4;Parent=Phyra74122;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 411823 413389 . - 0 ID=Phyra74122;Parent=Phyra74122;rank=3 scaffold_6 . exon 411823 413389 . - . ID=Phyra74122.3;Parent=Phyra74122;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 413481 413531 . - 0 ID=Phyra74122;Parent=Phyra74122;rank=2 scaffold_6 . exon 413481 413531 . - . ID=Phyra74122.2;Parent=Phyra74122;constitutive=1;rank=2 scaffold_6 . CDS 413608 413658 . - 0 ID=Phyra74122;Parent=Phyra74122;rank=1 scaffold_6 . exon 413608 413658 . - . ID=Phyra74122.1;Parent=Phyra74122;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 414084 416513 . - . ID=Phyra74123;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000106;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 414084 416513 . - . ID=Phyra74123;Parent=Phyra74123;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 414084 416513 . - 0 ID=Phyra74123;Parent=Phyra74123;rank=1 scaffold_6 . exon 414084 416513 . - . ID=Phyra74123.1;Parent=Phyra74123;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 417252 420887 . - . ID=Phyra74124;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000107;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 417252 420887 . - . ID=Phyra74124;Parent=Phyra74124;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 417252 420887 . - 0 ID=Phyra74124;Parent=Phyra74124;rank=1 scaffold_6 . exon 417252 420887 . - . ID=Phyra74124.1;Parent=Phyra74124;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 421401 435917 . - . ID=Phyra74125;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000108;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 421401 435917 . - . ID=Phyra74125;Parent=Phyra74125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 421401 435917 . - 0 ID=Phyra74125;Parent=Phyra74125;rank=1 scaffold_6 . exon 421401 435917 . - . ID=Phyra74125.1;Parent=Phyra74125;constitutive=1;rank=1 scaffold_6 . biological_region 427268 427270 0.999 - . logic_name=eponine scaffold_6 . biological_region 427286 427291 0.999 - . logic_name=eponine scaffold_6 . repeat_region 436040 436068 . ? . description=trf scaffold_6 . repeat_region 437518 437531 . ? . description=dust scaffold_6 . repeat_region 443091 443126 . ? . description=trf scaffold_6 ensembl protein_coding_gene 436745 437335 . + . ID=Phyra51347;biotype=protein_coding;external_name=gwEuk.6.39.1;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 436745 437335 . + . ID=Phyra51347;Parent=Phyra51347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 436745 437335 . + 0 ID=Phyra51347;Parent=Phyra51347;rank=1 scaffold_6 . exon 436745 437335 . + . ID=Phyra51347.1;Parent=Phyra51347;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 438633 439385 . + . ID=Phyra71172;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_6000006;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 438633 439385 . + . ID=Phyra71172;Parent=Phyra71172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 438633 439385 . + 0 ID=Phyra71172;Parent=Phyra71172;rank=1 scaffold_6 . exon 438633 439385 . + . ID=Phyra71172.1;Parent=Phyra71172;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 421401 435917 . - . ID=Phyra74125;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000108;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 421401 435917 . - . ID=Phyra74125;Parent=Phyra74125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 421401 435917 . - 0 ID=Phyra74125;Parent=Phyra74125;rank=1 scaffold_6 . exon 421401 435917 . - . ID=Phyra74125.1;Parent=Phyra74125;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 441018 441793 . - . ID=Phyra74128;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000111;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 441018 441793 . - . ID=Phyra74128;Parent=Phyra74128;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 441018 441040 . - 0 ID=Phyra74128;Parent=Phyra74128;rank=2 scaffold_6 . exon 441018 441040 . - . ID=Phyra74128.2;Parent=Phyra74128;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 441070 441793 . - 0 ID=Phyra74128;Parent=Phyra74128;rank=1 scaffold_6 . exon 441070 441793 . - . ID=Phyra74128.1;Parent=Phyra74128;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 442490 444157 . - . ID=Phyra74129;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000112;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 442490 444157 . - . ID=Phyra74129;Parent=Phyra74129;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 442490 444157 . - 0 ID=Phyra74129;Parent=Phyra74129;rank=1 scaffold_6 . exon 442490 444157 . - . ID=Phyra74129.1;Parent=Phyra74129;constitutive=1;rank=1 scaffold_6 . biological_region 453202 453206 0.999 + . logic_name=eponine scaffold_6 . biological_region 453235 453239 0.999 + . logic_name=eponine scaffold_6 . biological_region 453330 453339 0.999 - . logic_name=eponine scaffold_6 . biological_region 454217 454220 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 445209 446375 . + . ID=Phyra74130;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000113;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 445209 446375 . + . ID=Phyra74130;Parent=Phyra74130;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 445209 445739 . + 0 ID=Phyra74130;Parent=Phyra74130;rank=1 scaffold_6 . exon 445209 445739 . + . ID=Phyra74130.1;Parent=Phyra74130;constitutive=1;rank=1 scaffold_6 . CDS 446337 446375 . + 0 ID=Phyra74130;Parent=Phyra74130;rank=2 scaffold_6 . exon 446337 446375 . + . ID=Phyra74130.2;Parent=Phyra74130;constitutive=1;rank=2 scaffold_6 ensembl protein_coding_gene 446590 448711 . - . ID=Phyra74131;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000114;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 446590 448711 . - . ID=Phyra74131;Parent=Phyra74131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 446590 446760 . - 0 ID=Phyra74131;Parent=Phyra74131;rank=7 scaffold_6 . exon 446590 446760 . - . ID=Phyra74131.7;Parent=Phyra74131;constitutive=1;rank=7 scaffold_6 . CDS 446825 446929 . - 0 ID=Phyra74131;Parent=Phyra74131;rank=6 scaffold_6 . exon 446825 446929 . - . ID=Phyra74131.6;Parent=Phyra74131;constitutive=1;rank=6 scaffold_6 . CDS 446988 447079 . - 0 ID=Phyra74131;Parent=Phyra74131;rank=5 scaffold_6 . exon 446988 447079 . - . ID=Phyra74131.5;Parent=Phyra74131;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 447146 447867 . - 0 ID=Phyra74131;Parent=Phyra74131;rank=4 scaffold_6 . exon 447146 447867 . - . ID=Phyra74131.4;Parent=Phyra74131;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 447982 448183 . - 0 ID=Phyra74131;Parent=Phyra74131;rank=3 scaffold_6 . exon 447982 448183 . - . ID=Phyra74131.3;Parent=Phyra74131;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_6 . CDS 448337 448523 . - 0 ID=Phyra74131;Parent=Phyra74131;rank=2 scaffold_6 . exon 448337 448523 . - . ID=Phyra74131.2;Parent=Phyra74131;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 448664 448711 . - 0 ID=Phyra74131;Parent=Phyra74131;rank=1 scaffold_6 . exon 448664 448711 . - . ID=Phyra74131.1;Parent=Phyra74131;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 449062 450296 . - . ID=Phyra74132;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000115;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 449062 450296 . - . ID=Phyra74132;Parent=Phyra74132;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 449062 449088 . - 0 ID=Phyra74132;Parent=Phyra74132;rank=3 scaffold_6 . exon 449062 449088 . - . ID=Phyra74132.3;Parent=Phyra74132;constitutive=1;rank=3 scaffold_6 . CDS 449130 450117 . - 0 ID=Phyra74132;Parent=Phyra74132;rank=2 scaffold_6 . exon 449130 450117 . - . ID=Phyra74132.2;Parent=Phyra74132;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 450220 450296 . - 0 ID=Phyra74132;Parent=Phyra74132;rank=1 scaffold_6 . exon 450220 450296 . - . ID=Phyra74132.1;Parent=Phyra74132;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 451464 452995 . - . ID=Phyra74133;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000116;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 451464 452995 . - . ID=Phyra74133;Parent=Phyra74133;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 451464 451506 . - 0 ID=Phyra74133;Parent=Phyra74133;rank=4 scaffold_6 . exon 451464 451506 . - . ID=Phyra74133.4;Parent=Phyra74133;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 451539 451670 . - 0 ID=Phyra74133;Parent=Phyra74133;rank=3 scaffold_6 . exon 451539 451670 . - . ID=Phyra74133.3;Parent=Phyra74133;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_6 . CDS 451745 451798 . - 0 ID=Phyra74133;Parent=Phyra74133;rank=2 scaffold_6 . exon 451745 451798 . - . ID=Phyra74133.2;Parent=Phyra74133;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_6 . CDS 451884 452995 . - 0 ID=Phyra74133;Parent=Phyra74133;rank=1 scaffold_6 . exon 451884 452995 . - . ID=Phyra74133.1;Parent=Phyra74133;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 453997 455319 . - . ID=Phyra74134;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000117;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 453997 455319 . - . ID=Phyra74134;Parent=Phyra74134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 453997 455319 . - 0 ID=Phyra74134;Parent=Phyra74134;rank=1 scaffold_6 . exon 453997 455319 . - . ID=Phyra74134.1;Parent=Phyra74134;constitutive=1;rank=1 scaffold_6 . repeat_region 454616 454649 . ? . description=trf scaffold_6 . repeat_region 458220 458227 . ? . description=dust scaffold_6 ensembl protein_coding_gene 456050 457143 . - . ID=Phyra74135;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000118;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 456050 457143 . - . ID=Phyra74135;Parent=Phyra74135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 456050 456611 . - 0 ID=Phyra74135;Parent=Phyra74135;rank=2 scaffold_6 . exon 456050 456611 . - . ID=Phyra74135.2;Parent=Phyra74135;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 456695 457143 . - 0 ID=Phyra74135;Parent=Phyra74135;rank=1 scaffold_6 . exon 456695 457143 . - . ID=Phyra74135.1;Parent=Phyra74135;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 458583 459602 . - . ID=Phyra74136;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000119;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 458583 459602 . - . ID=Phyra74136;Parent=Phyra74136;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 458583 459602 . - 0 ID=Phyra74136;Parent=Phyra74136;rank=1 scaffold_6 . exon 458583 459602 . - . ID=Phyra74136.1;Parent=Phyra74136;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 459747 462947 . - . ID=Phyra74137;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000120;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 459747 462947 . - . ID=Phyra74137;Parent=Phyra74137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 459747 462947 . - 0 ID=Phyra74137;Parent=Phyra74137;rank=1 scaffold_6 . exon 459747 462947 . - . ID=Phyra74137.1;Parent=Phyra74137;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 463359 465802 . + . ID=Phyra74138;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000121;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 463359 465802 . + . ID=Phyra74138;Parent=Phyra74138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 463359 463376 . + 0 ID=Phyra74138;Parent=Phyra74138;rank=1 scaffold_6 . exon 463359 463376 . + . ID=Phyra74138.1;Parent=Phyra74138;constitutive=1;rank=1 scaffold_6 . CDS 463433 463502 . + 0 ID=Phyra74138;Parent=Phyra74138;rank=2 scaffold_6 . exon 463433 463502 . + . ID=Phyra74138.2;Parent=Phyra74138;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 463560 464261 . + 0 ID=Phyra74138;Parent=Phyra74138;rank=3 scaffold_6 . exon 463560 464261 . + . ID=Phyra74138.3;Parent=Phyra74138;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 464578 464813 . + 0 ID=Phyra74138;Parent=Phyra74138;rank=4 scaffold_6 . CDS 464895 465030 . + 0 ID=Phyra74138;Parent=Phyra74138;rank=5 scaffold_6 . CDS 465204 465802 . + 0 ID=Phyra74138;Parent=Phyra74138;rank=6 scaffold_6 . biological_region 467434 467438 0.999 - . logic_name=eponine scaffold_6 . biological_region 467491 467494 0.999 + . logic_name=eponine scaffold_6 . biological_region 467538 467542 0.999 + . logic_name=eponine scaffold_6 . biological_region 468289 468294 0.999 + . logic_name=eponine scaffold_6 . biological_region 468313 468317 0.999 + . logic_name=eponine scaffold_6 . biological_region 468416 468422 0.999 - . logic_name=eponine scaffold_6 . biological_region 471069 471070 0.999 - . logic_name=eponine scaffold_6 . biological_region 471981 471984 0.999 + . logic_name=eponine scaffold_6 . exon 464578 464813 . + . ID=Phyra74138.4;Parent=Phyra74138;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . exon 464895 465030 . + . ID=Phyra74138.5;Parent=Phyra74138;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_6 . exon 465204 465802 . + . ID=Phyra74138.6;Parent=Phyra74138;constitutive=1;ensembl_phase=1;rank=6 scaffold_6 ensembl protein_coding_gene 466040 467059 . + . ID=Phyra74139;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000122;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 466040 467059 . + . ID=Phyra74139;Parent=Phyra74139;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 466040 467059 . + 0 ID=Phyra74139;Parent=Phyra74139;rank=1 scaffold_6 . exon 466040 467059 . + . ID=Phyra74139.1;Parent=Phyra74139;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 467662 469425 . + . ID=Phyra74140;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000123;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 467662 469425 . + . ID=Phyra74140;Parent=Phyra74140;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 467662 469425 . + 0 ID=Phyra74140;Parent=Phyra74140;rank=1 scaffold_6 . exon 467662 469425 . + . ID=Phyra74140.1;Parent=Phyra74140;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 469720 472039 . - . ID=Phyra74141;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000124;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 469720 472039 . - . ID=Phyra74141;Parent=Phyra74141;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 469720 470854 . - 0 ID=Phyra74141;Parent=Phyra74141;rank=3 scaffold_6 . exon 469720 470854 . - . ID=Phyra74141.3;Parent=Phyra74141;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 470964 471536 . - 0 ID=Phyra74141;Parent=Phyra74141;rank=2 scaffold_6 . exon 470964 471536 . - . ID=Phyra74141.2;Parent=Phyra74141;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_6 . CDS 471609 472039 . - 0 ID=Phyra74141;Parent=Phyra74141;rank=1 scaffold_6 . exon 471609 472039 . - . ID=Phyra74141.1;Parent=Phyra74141;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 472291 473347 . - . ID=Phyra74142;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000125;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 472291 473347 . - . ID=Phyra74142;Parent=Phyra74142;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 472291 472849 . - 0 ID=Phyra74142;Parent=Phyra74142;rank=2 scaffold_6 . exon 472291 472849 . - . ID=Phyra74142.2;Parent=Phyra74142;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 472917 473347 . - 0 ID=Phyra74142;Parent=Phyra74142;rank=1 scaffold_6 . exon 472917 473347 . - . ID=Phyra74142.1;Parent=Phyra74142;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 473642 474487 . - . ID=Phyra74143;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000126;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 473642 474487 . - . ID=Phyra74143;Parent=Phyra74143;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 473642 474200 . - 0 ID=Phyra74143;Parent=Phyra74143;rank=2 scaffold_6 . exon 473642 474200 . - . ID=Phyra74143.2;Parent=Phyra74143;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 474270 474487 . - 0 ID=Phyra74143;Parent=Phyra74143;rank=1 scaffold_6 . repeat_region 475848 475880 . ? . description=trf scaffold_6 . repeat_region 477983 477990 . ? . description=dust scaffold_6 . exon 474270 474487 . - . ID=Phyra74143.1;Parent=Phyra74143;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 474900 475445 . + . ID=Phyra74144;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000127;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 474900 475445 . + . ID=Phyra74144;Parent=Phyra74144;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 474900 475445 . + 0 ID=Phyra74144;Parent=Phyra74144;rank=1 scaffold_6 . exon 474900 475445 . + . ID=Phyra74144.1;Parent=Phyra74144;constitutive=1;rank=1 scaffold_6 . biological_region 485088 485090 0.999 + . logic_name=eponine scaffold_6 . biological_region 493469 493471 0.999 + . logic_name=eponine scaffold_6 . biological_region 493539 493544 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 485010 487993 . + . ID=Phyra74145;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000128;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 485010 487993 . + . ID=Phyra74145;Parent=Phyra74145;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 485010 485590 . + 0 ID=Phyra74145;Parent=Phyra74145;rank=1 scaffold_6 . exon 485010 485590 . + . ID=Phyra74145.1;Parent=Phyra74145;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 485665 487993 . + 0 ID=Phyra74145;Parent=Phyra74145;rank=2 scaffold_6 . exon 485665 487993 . + . ID=Phyra74145.2;Parent=Phyra74145;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 ensembl protein_coding_gene 488502 489554 . + . ID=Phyra74146;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000129;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 488502 489554 . + . ID=Phyra74146;Parent=Phyra74146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 488502 489554 . + 0 ID=Phyra74146;Parent=Phyra74146;rank=1 scaffold_6 . exon 488502 489554 . + . ID=Phyra74146.1;Parent=Phyra74146;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 491265 492812 . + . ID=Phyra74147;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000130;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 491265 492812 . + . ID=Phyra74147;Parent=Phyra74147;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 491265 492812 . + 0 ID=Phyra74147;Parent=Phyra74147;rank=1 scaffold_6 . exon 491265 492812 . + . ID=Phyra74147.1;Parent=Phyra74147;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 493849 495387 . + . ID=Phyra74148;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000131;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 493849 495387 . + . ID=Phyra74148;Parent=Phyra74148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 493849 495387 . + 0 ID=Phyra74148;Parent=Phyra74148;rank=1 scaffold_6 . exon 493849 495387 . + . ID=Phyra74148.1;Parent=Phyra74148;constitutive=1;rank=1 scaffold_6 . repeat_region 499426 499434 . ? . description=dust scaffold_6 . repeat_region 499596 499625 . ? . description=trf scaffold_6 . repeat_region 499694 500335 . ? . description=trf scaffold_6 . repeat_region 503072 503079 . ? . description=dust scaffold_6 ensembl protein_coding_gene 495647 496808 . + . ID=Phyra74149;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000132;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 495647 496808 . + . ID=Phyra74149;Parent=Phyra74149;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 495647 495745 . + 0 ID=Phyra74149;Parent=Phyra74149;rank=1 scaffold_6 . exon 495647 495745 . + . ID=Phyra74149.1;Parent=Phyra74149;constitutive=1;rank=1 scaffold_6 . CDS 495824 496008 . + 0 ID=Phyra74149;Parent=Phyra74149;rank=2 scaffold_6 . exon 495824 496008 . + . ID=Phyra74149.2;Parent=Phyra74149;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 496068 496134 . + 0 ID=Phyra74149;Parent=Phyra74149;rank=3 scaffold_6 . exon 496068 496134 . + . ID=Phyra74149.3;Parent=Phyra74149;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 496212 496808 . + 0 ID=Phyra74149;Parent=Phyra74149;rank=4 scaffold_6 . exon 496212 496808 . + . ID=Phyra74149.4;Parent=Phyra74149;constitutive=1;rank=4 scaffold_6 ensembl protein_coding_gene 497062 498741 . - . ID=Phyra74150;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000133;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 497062 498741 . - . ID=Phyra74150;Parent=Phyra74150;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 497062 497084 . - 0 ID=Phyra74150;Parent=Phyra74150;rank=7 scaffold_6 . exon 497062 497084 . - . ID=Phyra74150.7;Parent=Phyra74150;constitutive=1;ensembl_phase=1;rank=7 scaffold_6 . CDS 497144 497597 . - 0 ID=Phyra74150;Parent=Phyra74150;rank=6 scaffold_6 . exon 497144 497597 . - . ID=Phyra74150.6;Parent=Phyra74150;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_6 . CDS 497661 497927 . - 0 ID=Phyra74150;Parent=Phyra74150;rank=5 scaffold_6 . exon 497661 497927 . - . ID=Phyra74150.5;Parent=Phyra74150;constitutive=1;rank=5 scaffold_6 . CDS 497997 498105 . - 0 ID=Phyra74150;Parent=Phyra74150;rank=4 scaffold_6 . exon 497997 498105 . - . ID=Phyra74150.4;Parent=Phyra74150;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 498163 498249 . - 0 ID=Phyra74150;Parent=Phyra74150;rank=3 scaffold_6 . exon 498163 498249 . - . ID=Phyra74150.3;Parent=Phyra74150;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_6 . CDS 498324 498410 . - 0 ID=Phyra74150;Parent=Phyra74150;rank=2 scaffold_6 . exon 498324 498410 . - . ID=Phyra74150.2;Parent=Phyra74150;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_6 . CDS 498485 498741 . - 0 ID=Phyra74150;Parent=Phyra74150;rank=1 scaffold_6 . exon 498485 498741 . - . ID=Phyra74150.1;Parent=Phyra74150;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . biological_region 507146 507149 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 504146 508129 . + . ID=Phyra74151;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000134;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 504146 508129 . + . ID=Phyra74151;Parent=Phyra74151;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 504146 504489 . + 0 ID=Phyra74151;Parent=Phyra74151;rank=1 scaffold_6 . exon 504146 504489 . + . ID=Phyra74151.1;Parent=Phyra74151;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 504562 504750 . + 0 ID=Phyra74151;Parent=Phyra74151;rank=2 scaffold_6 . exon 504562 504750 . + . ID=Phyra74151.2;Parent=Phyra74151;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_6 . CDS 504812 504961 . + 0 ID=Phyra74151;Parent=Phyra74151;rank=3 scaffold_6 . exon 504812 504961 . + . ID=Phyra74151.3;Parent=Phyra74151;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_6 . CDS 505031 505067 . + 0 ID=Phyra74151;Parent=Phyra74151;rank=4 scaffold_6 . exon 505031 505067 . + . ID=Phyra74151.4;Parent=Phyra74151;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 505135 505548 . + 0 ID=Phyra74151;Parent=Phyra74151;rank=5 scaffold_6 . exon 505135 505548 . + . ID=Phyra74151.5;Parent=Phyra74151;constitutive=1;rank=5 scaffold_6 . CDS 505614 505665 . + 0 ID=Phyra74151;Parent=Phyra74151;rank=6 scaffold_6 . exon 505614 505665 . + . ID=Phyra74151.6;Parent=Phyra74151;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_6 . CDS 505728 506038 . + 0 ID=Phyra74151;Parent=Phyra74151;rank=7 scaffold_6 . exon 505728 506038 . + . ID=Phyra74151.7;Parent=Phyra74151;constitutive=1;ensembl_phase=1;rank=7 scaffold_6 . CDS 506178 506321 . + 0 ID=Phyra74151;Parent=Phyra74151;rank=8 scaffold_6 . exon 506178 506321 . + . ID=Phyra74151.8;Parent=Phyra74151;constitutive=1;rank=8 scaffold_6 . CDS 506387 508129 . + 0 ID=Phyra74151;Parent=Phyra74151;rank=9 scaffold_6 . exon 506387 508129 . + . ID=Phyra74151.9;Parent=Phyra74151;constitutive=1;rank=9 scaffold_6 ensembl protein_coding_gene 508253 509631 . - . ID=Phyra74152;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000135;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 508253 509631 . - . ID=Phyra74152;Parent=Phyra74152;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 508253 508447 . - 0 ID=Phyra74152;Parent=Phyra74152;rank=7 scaffold_6 . exon 508253 508447 . - . ID=Phyra74152.7;Parent=Phyra74152;constitutive=1;rank=7 scaffold_6 . CDS 508521 508694 . - 0 ID=Phyra74152;Parent=Phyra74152;rank=6 scaffold_6 . exon 508521 508694 . - . ID=Phyra74152.6;Parent=Phyra74152;constitutive=1;rank=6 scaffold_6 . CDS 508772 508843 . - 0 ID=Phyra74152;Parent=Phyra74152;rank=5 scaffold_6 . exon 508772 508843 . - . ID=Phyra74152.5;Parent=Phyra74152;constitutive=1;rank=5 scaffold_6 . CDS 508913 509028 . - 0 ID=Phyra74152;Parent=Phyra74152;rank=4 scaffold_6 . exon 508913 509028 . - . ID=Phyra74152.4;Parent=Phyra74152;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 509097 509145 . - 0 ID=Phyra74152;Parent=Phyra74152;rank=3 scaffold_6 . exon 509097 509145 . - . ID=Phyra74152.3;Parent=Phyra74152;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 509325 509460 . - 0 ID=Phyra74152;Parent=Phyra74152;rank=2 scaffold_6 . exon 509325 509460 . - . ID=Phyra74152.2;Parent=Phyra74152;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 509531 509631 . - 0 ID=Phyra74152;Parent=Phyra74152;rank=1 scaffold_6 . exon 509531 509631 . - . ID=Phyra74152.1;Parent=Phyra74152;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 510671 511090 . - . ID=Phyra74153;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000136;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 510671 511090 . - . ID=Phyra74153;Parent=Phyra74153;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 510671 511090 . - 0 ID=Phyra74153;Parent=Phyra74153;rank=1 scaffold_6 . exon 510671 511090 . - . ID=Phyra74153.1;Parent=Phyra74153;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 511337 512230 . - . ID=Phyra74154;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000137;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 511337 512230 . - . ID=Phyra74154;Parent=Phyra74154;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 511337 512230 . - 0 ID=Phyra74154;Parent=Phyra74154;rank=1 scaffold_6 . exon 511337 512230 . - . ID=Phyra74154.1;Parent=Phyra74154;constitutive=1;rank=1 scaffold_6 . repeat_region 515366 515410 . ? . description=trf scaffold_6 ensembl protein_coding_gene 513886 515008 . - . ID=Phyra74155;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000138;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 513886 515008 . - . ID=Phyra74155;Parent=Phyra74155;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 513886 514800 . - 0 ID=Phyra74155;Parent=Phyra74155;rank=2 scaffold_6 . exon 513886 514800 . - . ID=Phyra74155.2;Parent=Phyra74155;constitutive=1;rank=2 scaffold_6 . CDS 514982 515008 . - 0 ID=Phyra74155;Parent=Phyra74155;rank=1 scaffold_6 . exon 514982 515008 . - . ID=Phyra74155.1;Parent=Phyra74155;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 515178 523016 . + . ID=Phyra74156;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000139;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 515178 523016 . + . ID=Phyra74156;Parent=Phyra74156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 515178 515286 . + 0 ID=Phyra74156;Parent=Phyra74156;rank=1 scaffold_6 . exon 515178 515286 . + . ID=Phyra74156.1;Parent=Phyra74156;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 515359 516183 . + 0 ID=Phyra74156;Parent=Phyra74156;rank=2 scaffold_6 . exon 515359 516183 . + . ID=Phyra74156.2;Parent=Phyra74156;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 516243 517090 . + 0 ID=Phyra74156;Parent=Phyra74156;rank=3 scaffold_6 . exon 516243 517090 . + . ID=Phyra74156.3;Parent=Phyra74156;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 517789 518001 . + 0 ID=Phyra74156;Parent=Phyra74156;rank=4 scaffold_6 . exon 517789 518001 . + . ID=Phyra74156.4;Parent=Phyra74156;constitutive=1;rank=4 scaffold_6 . CDS 518066 518193 . + 0 ID=Phyra74156;Parent=Phyra74156;rank=5 scaffold_6 . exon 518066 518193 . + . ID=Phyra74156.5;Parent=Phyra74156;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_6 . CDS 518537 519752 . + 0 ID=Phyra74156;Parent=Phyra74156;rank=6 scaffold_6 . exon 518537 519752 . + . ID=Phyra74156.6;Parent=Phyra74156;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . CDS 519814 519984 . + 0 ID=Phyra74156;Parent=Phyra74156;rank=7 scaffold_6 . exon 519814 519984 . + . ID=Phyra74156.7;Parent=Phyra74156;constitutive=1;rank=7 scaffold_6 . CDS 520044 520630 . + 0 ID=Phyra74156;Parent=Phyra74156;rank=8 scaffold_6 . exon 520044 520630 . + . ID=Phyra74156.8;Parent=Phyra74156;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_6 . CDS 520751 522603 . + 0 ID=Phyra74156;Parent=Phyra74156;rank=9 scaffold_6 . exon 520751 522603 . + . ID=Phyra74156.9;Parent=Phyra74156;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_6 . CDS 522796 523016 . + 0 ID=Phyra74156;Parent=Phyra74156;rank=10 scaffold_6 . exon 522796 523016 . + . ID=Phyra74156.10;Parent=Phyra74156;constitutive=1;ensembl_phase=1;rank=10 scaffold_6 ensembl protein_coding_gene 523389 525012 . - . ID=Phyra74157;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000140;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 523389 525012 . - . ID=Phyra74157;Parent=Phyra74157;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 523389 523451 . - 0 ID=Phyra74157;Parent=Phyra74157;rank=5 scaffold_6 . exon 523389 523451 . - . ID=Phyra74157.5;Parent=Phyra74157;constitutive=1;rank=5 scaffold_6 . CDS 523541 523801 . - 0 ID=Phyra74157;Parent=Phyra74157;rank=4 scaffold_6 . exon 523541 523801 . - . ID=Phyra74157.4;Parent=Phyra74157;constitutive=1;rank=4 scaffold_6 . CDS 523869 523929 . - 0 ID=Phyra74157;Parent=Phyra74157;rank=3 scaffold_6 . CDS 523992 524806 . - 0 ID=Phyra74157;Parent=Phyra74157;rank=2 scaffold_6 . CDS 524872 525012 . - 0 ID=Phyra74157;Parent=Phyra74157;rank=1 scaffold_6 . biological_region 524608 524610 0.999 - . logic_name=eponine scaffold_6 . biological_region 527959 527960 0.999 + . logic_name=eponine scaffold_6 . repeat_region 532364 532371 . ? . description=dust scaffold_6 . exon 523869 523929 . - . ID=Phyra74157.3;Parent=Phyra74157;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . exon 523992 524806 . - . ID=Phyra74157.2;Parent=Phyra74157;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . exon 524872 525012 . - . ID=Phyra74157.1;Parent=Phyra74157;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 533942 535483 . + . ID=Phyra74158;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000141;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 533942 535483 . + . ID=Phyra74158;Parent=Phyra74158;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 533942 535483 . + 0 ID=Phyra74158;Parent=Phyra74158;rank=1 scaffold_6 . exon 533942 535483 . + . ID=Phyra74158.1;Parent=Phyra74158;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 540126 541071 . + . ID=Phyra74159;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000142;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 540126 541071 . + . ID=Phyra74159;Parent=Phyra74159;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 540126 540229 . + 0 ID=Phyra74159;Parent=Phyra74159;rank=1 scaffold_6 . exon 540126 540229 . + . ID=Phyra74159.1;Parent=Phyra74159;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 540287 540659 . + 0 ID=Phyra74159;Parent=Phyra74159;rank=2 scaffold_6 . exon 540287 540659 . + . ID=Phyra74159.2;Parent=Phyra74159;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 540733 541071 . + 0 ID=Phyra74159;Parent=Phyra74159;rank=3 scaffold_6 . exon 540733 541071 . + . ID=Phyra74159.3;Parent=Phyra74159;constitutive=1;rank=3 scaffold_6 . repeat_region 552118 552152 . ? . description=dust scaffold_6 ensembl protein_coding_gene 551695 553124 . + . ID=Phyra74160;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000143;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 551695 553124 . + . ID=Phyra74160;Parent=Phyra74160;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 551695 551745 . + 0 ID=Phyra74160;Parent=Phyra74160;rank=1 scaffold_6 . exon 551695 551745 . + . ID=Phyra74160.1;Parent=Phyra74160;constitutive=1;rank=1 scaffold_6 . CDS 551865 552071 . + 0 ID=Phyra74160;Parent=Phyra74160;rank=2 scaffold_6 . exon 551865 552071 . + . ID=Phyra74160.2;Parent=Phyra74160;constitutive=1;rank=2 scaffold_6 . CDS 552162 552637 . + 0 ID=Phyra74160;Parent=Phyra74160;rank=3 scaffold_6 . exon 552162 552637 . + . ID=Phyra74160.3;Parent=Phyra74160;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_6 . CDS 552708 552771 . + 0 ID=Phyra74160;Parent=Phyra74160;rank=4 scaffold_6 . exon 552708 552771 . + . ID=Phyra74160.4;Parent=Phyra74160;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 552847 552935 . + 0 ID=Phyra74160;Parent=Phyra74160;rank=5 scaffold_6 . exon 552847 552935 . + . ID=Phyra74160.5;Parent=Phyra74160;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_6 . CDS 553001 553124 . + 0 ID=Phyra74160;Parent=Phyra74160;rank=6 scaffold_6 . exon 553001 553124 . + . ID=Phyra74160.6;Parent=Phyra74160;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . biological_region 557597 557598 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 553426 556222 . - . ID=Phyra74161;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000144;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 553426 556222 . - . ID=Phyra74161;Parent=Phyra74161;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 553426 554536 . - 0 ID=Phyra74161;Parent=Phyra74161;rank=6 scaffold_6 . exon 553426 554536 . - . ID=Phyra74161.6;Parent=Phyra74161;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . CDS 554557 554635 . - 0 ID=Phyra74161;Parent=Phyra74161;rank=5 scaffold_6 . exon 554557 554635 . - . ID=Phyra74161.5;Parent=Phyra74161;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_6 . CDS 554762 554941 . - 0 ID=Phyra74161;Parent=Phyra74161;rank=4 scaffold_6 . exon 554762 554941 . - . ID=Phyra74161.4;Parent=Phyra74161;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 555185 555412 . - 0 ID=Phyra74161;Parent=Phyra74161;rank=3 scaffold_6 . exon 555185 555412 . - . ID=Phyra74161.3;Parent=Phyra74161;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 555478 555759 . - 0 ID=Phyra74161;Parent=Phyra74161;rank=2 scaffold_6 . exon 555478 555759 . - . ID=Phyra74161.2;Parent=Phyra74161;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 555781 556222 . - 0 ID=Phyra74161;Parent=Phyra74161;rank=1 scaffold_6 . exon 555781 556222 . - . ID=Phyra74161.1;Parent=Phyra74161;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 556619 557988 . - . ID=Phyra74162;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000145;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 556619 557988 . - . ID=Phyra74162;Parent=Phyra74162;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 556619 557382 . - 0 ID=Phyra74162;Parent=Phyra74162;rank=2 scaffold_6 . exon 556619 557382 . - . ID=Phyra74162.2;Parent=Phyra74162;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 557487 557988 . - 0 ID=Phyra74162;Parent=Phyra74162;rank=1 scaffold_6 . exon 557487 557988 . - . ID=Phyra74162.1;Parent=Phyra74162;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 558288 559900 . - . ID=Phyra74163;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000146;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 558288 559900 . - . ID=Phyra74163;Parent=Phyra74163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 558288 559197 . - 0 ID=Phyra74163;Parent=Phyra74163;rank=2 scaffold_6 . exon 558288 559197 . - . ID=Phyra74163.2;Parent=Phyra74163;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 559260 559900 . - 0 ID=Phyra74163;Parent=Phyra74163;rank=1 scaffold_6 . exon 559260 559900 . - . ID=Phyra74163.1;Parent=Phyra74163;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . repeat_region 562538 572361 . ? . description=dust scaffold_6 . repeat_region 572362 573051 . ? . description=trf scaffold_6 . repeat_region 572454 572558 . ? . description=trf scaffold_6 . repeat_region 572456 572518 . ? . description=dust scaffold_6 . repeat_region 572794 572886 . ? . description=trf scaffold_6 . repeat_region 572808 572871 . ? . description=dust scaffold_6 ensembl protein_coding_gene 575485 576900 . + . ID=Phyra71173;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_6000007;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 575485 576900 . + . ID=Phyra71173;Parent=Phyra71173;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 575485 576900 . + 0 ID=Phyra71173;Parent=Phyra71173;rank=1 scaffold_6 . exon 575485 576900 . + . ID=Phyra71173.1;Parent=Phyra71173;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 580709 584437 . + . ID=Phyra71174;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_6000008;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 580709 584437 . + . ID=Phyra71174;Parent=Phyra71174;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 580709 584437 . + 0 ID=Phyra71174;Parent=Phyra71174;rank=1 scaffold_6 . exon 580709 584437 . + . ID=Phyra71174.1;Parent=Phyra71174;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 577966 579243 . + . ID=Phyra74165;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000148;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 577966 579243 . + . ID=Phyra74165;Parent=Phyra74165;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 577966 579243 . + 0 ID=Phyra74165;Parent=Phyra74165;rank=1 scaffold_6 . exon 577966 579243 . + . ID=Phyra74165.1;Parent=Phyra74165;constitutive=1;rank=1 scaffold_6 . biological_region 591610 591611 0.999 + . logic_name=eponine scaffold_6 . repeat_region 592723 592737 . ? . description=dust scaffold_6 ensembl protein_coding_gene 588929 590239 . - . ID=Phyra74169;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000152;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 588929 590239 . - . ID=Phyra74169;Parent=Phyra74169;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 588929 590239 . - 0 ID=Phyra74169;Parent=Phyra74169;rank=1 scaffold_6 . exon 588929 590239 . - . ID=Phyra74169.1;Parent=Phyra74169;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 590426 592072 . - . ID=Phyra74170;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000153;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 590426 592072 . - . ID=Phyra74170;Parent=Phyra74170;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 590426 592072 . - 0 ID=Phyra74170;Parent=Phyra74170;rank=1 scaffold_6 . exon 590426 592072 . - . ID=Phyra74170.1;Parent=Phyra74170;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 584720 585579 . + . ID=Phyra93789;biotype=protein_coding;external_name=C_scaffold_6000011;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 584720 585579 . + . ID=Phyra93789;Parent=Phyra93789;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 584720 584788 . + 0 ID=Phyra93789;Parent=Phyra93789;rank=1 scaffold_6 . exon 584720 584788 . + . ID=Phyra93789.1;Parent=Phyra93789;constitutive=1;rank=1 scaffold_6 . CDS 584829 584975 . + 0 ID=Phyra93789;Parent=Phyra93789;rank=2 scaffold_6 . exon 584829 584975 . + . ID=Phyra93789.2;Parent=Phyra93789;constitutive=1;rank=2 scaffold_6 . CDS 585062 585320 . + 0 ID=Phyra93789;Parent=Phyra93789;rank=3 scaffold_6 . exon 585062 585320 . + . ID=Phyra93789.3;Parent=Phyra93789;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 585398 585579 . + 0 ID=Phyra93789;Parent=Phyra93789;rank=4 scaffold_6 . exon 585398 585579 . + . ID=Phyra93789.4;Parent=Phyra93789;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 ensembl protein_coding_gene 588285 588788 . + . ID=Phyra93790;biotype=protein_coding;external_name=C_scaffold_6000012;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 588285 588788 . + . ID=Phyra93790;Parent=Phyra93790;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 588285 588788 . + 0 ID=Phyra93790;Parent=Phyra93790;rank=1 scaffold_6 . exon 588285 588788 . + . ID=Phyra93790.1;Parent=Phyra93790;constitutive=1;rank=1 scaffold_6 . repeat_region 600851 600891 . ? . description=trf scaffold_6 ensembl protein_coding_gene 592794 594404 . + . ID=Phyra74171;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000154;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 592794 594404 . + . ID=Phyra74171;Parent=Phyra74171;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 592794 594404 . + 0 ID=Phyra74171;Parent=Phyra74171;rank=1 scaffold_6 . exon 592794 594404 . + . ID=Phyra74171.1;Parent=Phyra74171;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 594560 600609 . - . ID=Phyra74172;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000155;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 594560 600609 . - . ID=Phyra74172;Parent=Phyra74172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 594560 596280 . - 0 ID=Phyra74172;Parent=Phyra74172;rank=7 scaffold_6 . exon 594560 596280 . - . ID=Phyra74172.7;Parent=Phyra74172;constitutive=1;ensembl_phase=1;rank=7 scaffold_6 . CDS 596406 596437 . - 0 ID=Phyra74172;Parent=Phyra74172;rank=6 scaffold_6 . exon 596406 596437 . - . ID=Phyra74172.6;Parent=Phyra74172;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_6 . CDS 596516 596730 . - 0 ID=Phyra74172;Parent=Phyra74172;rank=5 scaffold_6 . exon 596516 596730 . - . ID=Phyra74172.5;Parent=Phyra74172;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_6 . CDS 596790 596868 . - 0 ID=Phyra74172;Parent=Phyra74172;rank=4 scaffold_6 . exon 596790 596868 . - . ID=Phyra74172.4;Parent=Phyra74172;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 597001 598467 . - 0 ID=Phyra74172;Parent=Phyra74172;rank=3 scaffold_6 . exon 597001 598467 . - . ID=Phyra74172.3;Parent=Phyra74172;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_6 . CDS 598690 600448 . - 0 ID=Phyra74172;Parent=Phyra74172;rank=2 scaffold_6 . exon 598690 600448 . - . ID=Phyra74172.2;Parent=Phyra74172;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 600474 600609 . - 0 ID=Phyra74172;Parent=Phyra74172;rank=1 scaffold_6 . exon 600474 600609 . - . ID=Phyra74172.1;Parent=Phyra74172;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 602404 604047 . - . ID=Phyra74174;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000157;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 602404 604047 . - . ID=Phyra74174;Parent=Phyra74174;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 602404 602835 . - 0 ID=Phyra74174;Parent=Phyra74174;rank=9 scaffold_6 . exon 602404 602835 . - . ID=Phyra74174.9;Parent=Phyra74174;constitutive=1;rank=9 scaffold_6 . CDS 602897 602986 . - 0 ID=Phyra74174;Parent=Phyra74174;rank=8 scaffold_6 . CDS 603062 603121 . - 0 ID=Phyra74174;Parent=Phyra74174;rank=7 scaffold_6 . CDS 603216 603274 . - 0 ID=Phyra74174;Parent=Phyra74174;rank=6 scaffold_6 . CDS 603354 603358 . - 0 ID=Phyra74174;Parent=Phyra74174;rank=5 scaffold_6 . CDS 603438 603497 . - 0 ID=Phyra74174;Parent=Phyra74174;rank=4 scaffold_6 . CDS 603632 603736 . - 0 ID=Phyra74174;Parent=Phyra74174;rank=3 scaffold_6 . CDS 603809 603903 . - 0 ID=Phyra74174;Parent=Phyra74174;rank=2 scaffold_6 . CDS 603985 604047 . - 0 ID=Phyra74174;Parent=Phyra74174;rank=1 scaffold_6 ensembl protein_coding_gene 601093 602210 . + . ID=Phyra93793;biotype=protein_coding;external_name=C_scaffold_6000015;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 601093 602210 . + . ID=Phyra93793;Parent=Phyra93793;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 601093 601521 . + 0 ID=Phyra93793;Parent=Phyra93793;rank=1 scaffold_6 . exon 601093 601521 . + . ID=Phyra93793.1;Parent=Phyra93793;constitutive=1;rank=1 scaffold_6 . CDS 601548 602210 . + 0 ID=Phyra93793;Parent=Phyra93793;rank=2 scaffold_6 . exon 601548 602210 . + . ID=Phyra93793.2;Parent=Phyra93793;constitutive=1;rank=2 scaffold_6 ensembl protein_coding_gene 610421 612547 . - . ID=Phyra51394;biotype=protein_coding;external_name=gwEuk.6.86.1;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 610421 612547 . - . ID=Phyra51394;Parent=Phyra51394;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 610421 610495 . - 0 ID=Phyra51394;Parent=Phyra51394;rank=3 scaffold_6 . exon 610421 610495 . - . ID=Phyra51394.3;Parent=Phyra51394;constitutive=1;rank=3 scaffold_6 . CDS 611219 611884 . - 0 ID=Phyra51394;Parent=Phyra51394;rank=2 scaffold_6 . exon 611219 611884 . - . ID=Phyra51394.2;Parent=Phyra51394;constitutive=1;rank=2 scaffold_6 . CDS 612077 612547 . - 0 ID=Phyra51394;Parent=Phyra51394;rank=1 scaffold_6 . exon 612077 612547 . - . ID=Phyra51394.1;Parent=Phyra51394;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 604399 605316 . + . ID=Phyra71176;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_6000010;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 604399 605316 . + . ID=Phyra71176;Parent=Phyra71176;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 604399 604519 . + 0 ID=Phyra71176;Parent=Phyra71176;rank=1 scaffold_6 . exon 604399 604519 . + . ID=Phyra71176.1;Parent=Phyra71176;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 604586 604995 . + 0 ID=Phyra71176;Parent=Phyra71176;rank=2 scaffold_6 . exon 604586 604995 . + . ID=Phyra71176.2;Parent=Phyra71176;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 605065 605142 . + 0 ID=Phyra71176;Parent=Phyra71176;rank=3 scaffold_6 . exon 605065 605142 . + . ID=Phyra71176.3;Parent=Phyra71176;constitutive=1;rank=3 scaffold_6 . CDS 605215 605316 . + 0 ID=Phyra71176;Parent=Phyra71176;rank=4 scaffold_6 . exon 605215 605316 . + . ID=Phyra71176.4;Parent=Phyra71176;constitutive=1;rank=4 scaffold_6 . exon 602897 602986 . - . ID=Phyra74174.8;Parent=Phyra74174;constitutive=1;rank=8 scaffold_6 . exon 603062 603121 . - . ID=Phyra74174.7;Parent=Phyra74174;constitutive=1;rank=7 scaffold_6 . exon 603216 603274 . - . ID=Phyra74174.6;Parent=Phyra74174;constitutive=1;ensembl_phase=1;rank=6 scaffold_6 . exon 603354 603358 . - . ID=Phyra74174.5;Parent=Phyra74174;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_6 . exon 603438 603497 . - . ID=Phyra74174.4;Parent=Phyra74174;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_6 . exon 603632 603736 . - . ID=Phyra74174.3;Parent=Phyra74174;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_6 . exon 603809 603903 . - . ID=Phyra74174.2;Parent=Phyra74174;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . exon 603985 604047 . - . ID=Phyra74174.1;Parent=Phyra74174;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 605568 606838 . - . ID=Phyra74176;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000159;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 605568 606838 . - . ID=Phyra74176;Parent=Phyra74176;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 605568 605738 . - 0 ID=Phyra74176;Parent=Phyra74176;rank=4 scaffold_6 . exon 605568 605738 . - . ID=Phyra74176.4;Parent=Phyra74176;constitutive=1;rank=4 scaffold_6 . CDS 605812 605885 . - 0 ID=Phyra74176;Parent=Phyra74176;rank=3 scaffold_6 . exon 605812 605885 . - . ID=Phyra74176.3;Parent=Phyra74176;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 605955 606417 . - 0 ID=Phyra74176;Parent=Phyra74176;rank=2 scaffold_6 . exon 605955 606417 . - . ID=Phyra74176.2;Parent=Phyra74176;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 606485 606838 . - 0 ID=Phyra74176;Parent=Phyra74176;rank=1 scaffold_6 . exon 606485 606838 . - . ID=Phyra74176.1;Parent=Phyra74176;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 607019 609498 . + . ID=Phyra74177;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000160;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 607019 609498 . + . ID=Phyra74177;Parent=Phyra74177;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 607019 608096 . + 0 ID=Phyra74177;Parent=Phyra74177;rank=1 scaffold_6 . exon 607019 608096 . + . ID=Phyra74177.1;Parent=Phyra74177;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 608174 608673 . + 0 ID=Phyra74177;Parent=Phyra74177;rank=2 scaffold_6 . exon 608174 608673 . + . ID=Phyra74177.2;Parent=Phyra74177;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 608839 609285 . + 0 ID=Phyra74177;Parent=Phyra74177;rank=3 scaffold_6 . exon 608839 609285 . + . ID=Phyra74177.3;Parent=Phyra74177;constitutive=1;rank=3 scaffold_6 . CDS 609316 609498 . + 0 ID=Phyra74177;Parent=Phyra74177;rank=4 scaffold_6 . exon 609316 609498 . + . ID=Phyra74177.4;Parent=Phyra74177;constitutive=1;rank=4 scaffold_6 . repeat_region 614726 614734 . ? . description=dust scaffold_6 . repeat_region 615289 615351 . ? . description=dust scaffold_6 . repeat_region 615294 615343 . ? . description=trf scaffold_6 . repeat_region 616180 616202 . ? . description=dust scaffold_6 . biological_region 619452 619453 0.999 + . logic_name=eponine scaffold_6 . repeat_region 619621 619999 . ? . description=dust scaffold_6 ensembl protein_coding_gene 620053 620826 . + . ID=Phyra51401;biotype=protein_coding;external_name=gwEuk.6.93.1;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 620053 620826 . + . ID=Phyra51401;Parent=Phyra51401;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 620053 620826 . + 0 ID=Phyra51401;Parent=Phyra51401;rank=1 scaffold_6 . exon 620053 620826 . + . ID=Phyra51401.1;Parent=Phyra51401;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 615114 615548 . + . ID=Phyra74178;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000161;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 615114 615548 . + . ID=Phyra74178;Parent=Phyra74178;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 615114 615548 . + 0 ID=Phyra74178;Parent=Phyra74178;rank=1 scaffold_6 . exon 615114 615548 . + . ID=Phyra74178.1;Parent=Phyra74178;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 616318 617772 . - . ID=Phyra74179;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000162;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 616318 617772 . - . ID=Phyra74179;Parent=Phyra74179;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 616318 617772 . - 0 ID=Phyra74179;Parent=Phyra74179;rank=1 scaffold_6 . exon 616318 617772 . - . ID=Phyra74179.1;Parent=Phyra74179;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 619079 619465 . - . ID=Phyra74180;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000163;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 619079 619465 . - . ID=Phyra74180;Parent=Phyra74180;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 619079 619465 . - 0 ID=Phyra74180;Parent=Phyra74180;rank=1 scaffold_6 . exon 619079 619465 . - . ID=Phyra74180.1;Parent=Phyra74180;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 620966 622979 . - . ID=Phyra74182;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000165;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 620966 622979 . - . ID=Phyra74182;Parent=Phyra74182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 620966 622801 . - 0 ID=Phyra74182;Parent=Phyra74182;rank=2 scaffold_6 . exon 620966 622801 . - . ID=Phyra74182.2;Parent=Phyra74182;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 622877 622979 . - 0 ID=Phyra74182;Parent=Phyra74182;rank=1 scaffold_6 ensembl protein_coding_gene 627246 628376 . - . ID=Phyra71178;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_6000012;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 627246 628376 . - . ID=Phyra71178;Parent=Phyra71178;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 627246 628376 . - 0 ID=Phyra71178;Parent=Phyra71178;rank=1 scaffold_6 . exon 627246 628376 . - . ID=Phyra71178.1;Parent=Phyra71178;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 629130 629636 . + . ID=Phyra71179;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_6000013;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 629130 629636 . + . ID=Phyra71179;Parent=Phyra71179;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 629130 629636 . + 0 ID=Phyra71179;Parent=Phyra71179;rank=1 scaffold_6 . exon 629130 629636 . + . ID=Phyra71179.1;Parent=Phyra71179;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 630287 630811 . + . ID=Phyra71180;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_6000014;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 630287 630811 . + . ID=Phyra71180;Parent=Phyra71180;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 630287 630811 . + 0 ID=Phyra71180;Parent=Phyra71180;rank=1 scaffold_6 . exon 630287 630811 . + . ID=Phyra71180.1;Parent=Phyra71180;constitutive=1;rank=1 scaffold_6 . exon 622877 622979 . - . ID=Phyra74182.1;Parent=Phyra74182;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 624783 625761 . - . ID=Phyra74183;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000166;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 624783 625761 . - . ID=Phyra74183;Parent=Phyra74183;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 624783 624815 . - 0 ID=Phyra74183;Parent=Phyra74183;rank=2 scaffold_6 . exon 624783 624815 . - . ID=Phyra74183.2;Parent=Phyra74183;constitutive=1;rank=2 scaffold_6 . CDS 624871 625761 . - 0 ID=Phyra74183;Parent=Phyra74183;rank=1 scaffold_6 . exon 624871 625761 . - . ID=Phyra74183.1;Parent=Phyra74183;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 626055 626996 . + . ID=Phyra74184;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000167;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 626055 626996 . + . ID=Phyra74184;Parent=Phyra74184;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 626055 626996 . + 0 ID=Phyra74184;Parent=Phyra74184;rank=1 scaffold_6 . exon 626055 626996 . + . ID=Phyra74184.1;Parent=Phyra74184;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 631380 632527 . - . ID=Phyra74188;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000171;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 631380 632527 . - . ID=Phyra74188;Parent=Phyra74188;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 631380 631569 . - 0 ID=Phyra74188;Parent=Phyra74188;rank=4 scaffold_6 . exon 631380 631569 . - . ID=Phyra74188.4;Parent=Phyra74188;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 631636 631727 . - 0 ID=Phyra74188;Parent=Phyra74188;rank=3 scaffold_6 . exon 631636 631727 . - . ID=Phyra74188.3;Parent=Phyra74188;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_6 . CDS 631805 631859 . - 0 ID=Phyra74188;Parent=Phyra74188;rank=2 scaffold_6 . exon 631805 631859 . - . ID=Phyra74188.2;Parent=Phyra74188;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 631938 632527 . - 0 ID=Phyra74188;Parent=Phyra74188;rank=1 scaffold_6 . exon 631938 632527 . - . ID=Phyra74188.1;Parent=Phyra74188;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . repeat_region 632574 632581 . ? . description=dust scaffold_6 . repeat_region 633224 633263 . ? . description=trf scaffold_6 . repeat_region 634111 634140 . ? . description=trf scaffold_6 . repeat_region 641606 641892 . ? . description=trf scaffold_6 . biological_region 642066 642070 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 632757 634056 . + . ID=Phyra74189;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000172;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 632757 634056 . + . ID=Phyra74189;Parent=Phyra74189;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 632757 632816 . + 0 ID=Phyra74189;Parent=Phyra74189;rank=1 scaffold_6 . exon 632757 632816 . + . ID=Phyra74189.1;Parent=Phyra74189;constitutive=1;rank=1 scaffold_6 . CDS 632888 633219 . + 0 ID=Phyra74189;Parent=Phyra74189;rank=2 scaffold_6 . exon 632888 633219 . + . ID=Phyra74189.2;Parent=Phyra74189;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 633304 633379 . + 0 ID=Phyra74189;Parent=Phyra74189;rank=3 scaffold_6 . exon 633304 633379 . + . ID=Phyra74189.3;Parent=Phyra74189;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 633618 633735 . + 0 ID=Phyra74189;Parent=Phyra74189;rank=4 scaffold_6 . exon 633618 633735 . + . ID=Phyra74189.4;Parent=Phyra74189;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . CDS 633795 633892 . + 0 ID=Phyra74189;Parent=Phyra74189;rank=5 scaffold_6 . exon 633795 633892 . + . ID=Phyra74189.5;Parent=Phyra74189;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 633967 634056 . + 0 ID=Phyra74189;Parent=Phyra74189;rank=6 scaffold_6 . exon 633967 634056 . + . ID=Phyra74189.6;Parent=Phyra74189;constitutive=1;rank=6 scaffold_6 ensembl protein_coding_gene 634228 635779 . - . ID=Phyra74190;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000173;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 634228 635779 . - . ID=Phyra74190;Parent=Phyra74190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 634228 634962 . - 0 ID=Phyra74190;Parent=Phyra74190;rank=3 scaffold_6 . exon 634228 634962 . - . ID=Phyra74190.3;Parent=Phyra74190;constitutive=1;rank=3 scaffold_6 . CDS 635039 635260 . - 0 ID=Phyra74190;Parent=Phyra74190;rank=2 scaffold_6 . exon 635039 635260 . - . ID=Phyra74190.2;Parent=Phyra74190;constitutive=1;rank=2 scaffold_6 . CDS 635327 635779 . - 0 ID=Phyra74190;Parent=Phyra74190;rank=1 scaffold_6 . exon 635327 635779 . - . ID=Phyra74190.1;Parent=Phyra74190;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 641237 642162 . + . ID=Phyra74191;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000174;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 641237 642162 . + . ID=Phyra74191;Parent=Phyra74191;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 641237 641360 . + 0 ID=Phyra74191;Parent=Phyra74191;rank=1 scaffold_6 . exon 641237 641360 . + . ID=Phyra74191.1;Parent=Phyra74191;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 641599 642107 . + 0 ID=Phyra74191;Parent=Phyra74191;rank=2 scaffold_6 . exon 641599 642107 . + . ID=Phyra74191.2;Parent=Phyra74191;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 642133 642162 . + 0 ID=Phyra74191;Parent=Phyra74191;rank=3 scaffold_6 . exon 642133 642162 . + . ID=Phyra74191.3;Parent=Phyra74191;constitutive=1;rank=3 scaffold_6 ensembl protein_coding_gene 644764 646084 . - . ID=Phyra74192;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000175;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 644764 646084 . - . ID=Phyra74192;Parent=Phyra74192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 644764 645243 . - 0 ID=Phyra74192;Parent=Phyra74192;rank=5 scaffold_6 . exon 644764 645243 . - . ID=Phyra74192.5;Parent=Phyra74192;constitutive=1;rank=5 scaffold_6 . CDS 645265 645483 . - 0 ID=Phyra74192;Parent=Phyra74192;rank=4 scaffold_6 . exon 645265 645483 . - . ID=Phyra74192.4;Parent=Phyra74192;constitutive=1;rank=4 scaffold_6 . CDS 645519 645711 . - 0 ID=Phyra74192;Parent=Phyra74192;rank=3 scaffold_6 . exon 645519 645711 . - . ID=Phyra74192.3;Parent=Phyra74192;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 645836 645969 . - 0 ID=Phyra74192;Parent=Phyra74192;rank=2 scaffold_6 . exon 645836 645969 . - . ID=Phyra74192.2;Parent=Phyra74192;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 646013 646084 . - 0 ID=Phyra74192;Parent=Phyra74192;rank=1 scaffold_6 . exon 646013 646084 . - . ID=Phyra74192.1;Parent=Phyra74192;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 650515 651735 . + . ID=Phyra74193;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000176;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 650515 651735 . + . ID=Phyra74193;Parent=Phyra74193;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 650515 650790 . + 0 ID=Phyra74193;Parent=Phyra74193;rank=1 scaffold_6 . exon 650515 650790 . + . ID=Phyra74193.1;Parent=Phyra74193;constitutive=1;rank=1 scaffold_6 . CDS 651181 651366 . + 0 ID=Phyra74193;Parent=Phyra74193;rank=2 scaffold_6 . exon 651181 651366 . + . ID=Phyra74193.2;Parent=Phyra74193;constitutive=1;rank=2 scaffold_6 . CDS 651391 651592 . + 0 ID=Phyra74193;Parent=Phyra74193;rank=3 scaffold_6 . exon 651391 651592 . + . ID=Phyra74193.3;Parent=Phyra74193;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 651635 651735 . + 0 ID=Phyra74193;Parent=Phyra74193;rank=4 scaffold_6 . exon 651635 651735 . + . ID=Phyra74193.4;Parent=Phyra74193;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . repeat_region 652416 652423 . ? . description=dust scaffold_6 . biological_region 655201 655202 0.999 - . logic_name=eponine scaffold_6 . repeat_region 655744 655823 . ? . description=trf scaffold_6 . biological_region 658401 658401 0.999 + . logic_name=eponine scaffold_6 . repeat_region 659256 659263 . ? . description=dust scaffold_6 . repeat_region 661224 661232 . ? . description=dust scaffold_6 ensembl protein_coding_gene 659548 659940 . - . ID=Phyra51422;biotype=protein_coding;external_name=gwEuk.6.114.1;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 659548 659940 . - . ID=Phyra51422;Parent=Phyra51422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 659548 659940 . - 0 ID=Phyra51422;Parent=Phyra51422;rank=1 scaffold_6 . exon 659548 659940 . - . ID=Phyra51422.1;Parent=Phyra51422;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 652492 656273 . + . ID=Phyra74194;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000177;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 652492 656273 . + . ID=Phyra74194;Parent=Phyra74194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 652492 654089 . + 0 ID=Phyra74194;Parent=Phyra74194;rank=1 scaffold_6 . exon 652492 654089 . + . ID=Phyra74194.1;Parent=Phyra74194;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 654157 654196 . + 0 ID=Phyra74194;Parent=Phyra74194;rank=2 scaffold_6 . exon 654157 654196 . + . ID=Phyra74194.2;Parent=Phyra74194;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 654263 654334 . + 0 ID=Phyra74194;Parent=Phyra74194;rank=3 scaffold_6 . exon 654263 654334 . + . ID=Phyra74194.3;Parent=Phyra74194;constitutive=1;rank=3 scaffold_6 . CDS 654411 654553 . + 0 ID=Phyra74194;Parent=Phyra74194;rank=4 scaffold_6 . exon 654411 654553 . + . ID=Phyra74194.4;Parent=Phyra74194;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . CDS 654611 654626 . + 0 ID=Phyra74194;Parent=Phyra74194;rank=5 scaffold_6 . exon 654611 654626 . + . ID=Phyra74194.5;Parent=Phyra74194;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 654954 656273 . + 0 ID=Phyra74194;Parent=Phyra74194;rank=6 scaffold_6 . exon 654954 656273 . + . ID=Phyra74194.6;Parent=Phyra74194;constitutive=1;rank=6 scaffold_6 ensembl protein_coding_gene 665531 666792 . - . ID=Phyra74196;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000179;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 665531 666792 . - . ID=Phyra74196;Parent=Phyra74196;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 665531 666678 . - 0 ID=Phyra74196;Parent=Phyra74196;rank=2 scaffold_6 . exon 665531 666678 . - . ID=Phyra74196.2;Parent=Phyra74196;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 666714 666792 . - 0 ID=Phyra74196;Parent=Phyra74196;rank=1 scaffold_6 . exon 666714 666792 . - . ID=Phyra74196.1;Parent=Phyra74196;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 667189 668100 . - . ID=Phyra74197;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000180;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 667189 668100 . - . ID=Phyra74197;Parent=Phyra74197;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 667189 668100 . - 0 ID=Phyra74197;Parent=Phyra74197;rank=1 scaffold_6 . exon 667189 668100 . - . ID=Phyra74197.1;Parent=Phyra74197;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 670221 671066 . - . ID=Phyra74198;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000181;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 670221 671066 . - . ID=Phyra74198;Parent=Phyra74198;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 670221 671066 . - 0 ID=Phyra74198;Parent=Phyra74198;rank=1 scaffold_6 . exon 670221 671066 . - . ID=Phyra74198.1;Parent=Phyra74198;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 663319 664870 . - . ID=Phyra93798;biotype=protein_coding;external_name=C_scaffold_6000020;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 663319 664870 . - . ID=Phyra93798;Parent=Phyra93798;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 663319 663469 . - 0 ID=Phyra93798;Parent=Phyra93798;rank=7 scaffold_6 . exon 663319 663469 . - . ID=Phyra93798.7;Parent=Phyra93798;constitutive=1;ensembl_phase=2;rank=7 scaffold_6 . CDS 663545 663673 . - 0 ID=Phyra93798;Parent=Phyra93798;rank=6 scaffold_6 . exon 663545 663673 . - . ID=Phyra93798.6;Parent=Phyra93798;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_6 . CDS 663963 664098 . - 0 ID=Phyra93798;Parent=Phyra93798;rank=5 scaffold_6 . exon 663963 664098 . - . ID=Phyra93798.5;Parent=Phyra93798;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_6 . CDS 664161 664238 . - 0 ID=Phyra93798;Parent=Phyra93798;rank=4 scaffold_6 . exon 664161 664238 . - . ID=Phyra93798.4;Parent=Phyra93798;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 664313 664494 . - 0 ID=Phyra93798;Parent=Phyra93798;rank=3 scaffold_6 . exon 664313 664494 . - . ID=Phyra93798.3;Parent=Phyra93798;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 664562 664657 . - 0 ID=Phyra93798;Parent=Phyra93798;rank=2 scaffold_6 . exon 664562 664657 . - . ID=Phyra93798.2;Parent=Phyra93798;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_6 . CDS 664722 664870 . - 0 ID=Phyra93798;Parent=Phyra93798;rank=1 scaffold_6 . exon 664722 664870 . - . ID=Phyra93798.1;Parent=Phyra93798;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . biological_region 672123 672124 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 673185 673850 . + . ID=Phyra74199;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000182;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 673185 673850 . + . ID=Phyra74199;Parent=Phyra74199;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 673185 673850 . + 0 ID=Phyra74199;Parent=Phyra74199;rank=1 scaffold_6 . exon 673185 673850 . + . ID=Phyra74199.1;Parent=Phyra74199;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 676156 686075 . - . ID=Phyra74200;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000183;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 676156 686075 . - . ID=Phyra74200;Parent=Phyra74200;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 676156 676923 . - 0 ID=Phyra74200;Parent=Phyra74200;rank=8 scaffold_6 . exon 676156 676923 . - . ID=Phyra74200.8;Parent=Phyra74200;constitutive=1;rank=8 scaffold_6 . CDS 677000 678286 . - 0 ID=Phyra74200;Parent=Phyra74200;rank=7 scaffold_6 . exon 677000 678286 . - . ID=Phyra74200.7;Parent=Phyra74200;constitutive=1;rank=7 scaffold_6 . CDS 678363 680928 . - 0 ID=Phyra74200;Parent=Phyra74200;rank=6 scaffold_6 . exon 678363 680928 . - . ID=Phyra74200.6;Parent=Phyra74200;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . CDS 681217 682570 . - 0 ID=Phyra74200;Parent=Phyra74200;rank=5 scaffold_6 . exon 681217 682570 . - . ID=Phyra74200.5;Parent=Phyra74200;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_6 . CDS 682694 683959 . - 0 ID=Phyra74200;Parent=Phyra74200;rank=4 scaffold_6 . CDS 684090 684536 . - 0 ID=Phyra74200;Parent=Phyra74200;rank=3 scaffold_6 . CDS 684880 685960 . - 0 ID=Phyra74200;Parent=Phyra74200;rank=2 scaffold_6 . CDS 686040 686075 . - 0 ID=Phyra74200;Parent=Phyra74200;rank=1 scaffold_6 . repeat_region 683294 683351 . ? . description=trf scaffold_6 . repeat_region 684786 684835 . ? . description=dust scaffold_6 ensembl protein_coding_gene 689273 692206 . - . ID=Phyra71181;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_6000015;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 689273 692206 . - . ID=Phyra71181;Parent=Phyra71181;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 689273 692206 . - 0 ID=Phyra71181;Parent=Phyra71181;rank=1 scaffold_6 . exon 689273 692206 . - . ID=Phyra71181.1;Parent=Phyra71181;constitutive=1;rank=1 scaffold_6 . exon 682694 683959 . - . ID=Phyra74200.4;Parent=Phyra74200;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . exon 684090 684536 . - . ID=Phyra74200.3;Parent=Phyra74200;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_6 . exon 684880 685960 . - . ID=Phyra74200.2;Parent=Phyra74200;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . exon 686040 686075 . - . ID=Phyra74200.1;Parent=Phyra74200;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 686215 688655 . + . ID=Phyra74201;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000184;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 686215 688655 . + . ID=Phyra74201;Parent=Phyra74201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 686215 687154 . + 0 ID=Phyra74201;Parent=Phyra74201;rank=1 scaffold_6 . exon 686215 687154 . + . ID=Phyra74201.1;Parent=Phyra74201;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 687449 687817 . + 0 ID=Phyra74201;Parent=Phyra74201;rank=2 scaffold_6 . exon 687449 687817 . + . ID=Phyra74201.2;Parent=Phyra74201;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 687885 688027 . + 0 ID=Phyra74201;Parent=Phyra74201;rank=3 scaffold_6 . exon 687885 688027 . + . ID=Phyra74201.3;Parent=Phyra74201;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 688091 688413 . + 0 ID=Phyra74201;Parent=Phyra74201;rank=4 scaffold_6 . exon 688091 688413 . + . ID=Phyra74201.4;Parent=Phyra74201;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . CDS 688535 688655 . + 0 ID=Phyra74201;Parent=Phyra74201;rank=5 scaffold_6 . exon 688535 688655 . + . ID=Phyra74201.5;Parent=Phyra74201;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . biological_region 691600 691600 0.999 - . logic_name=eponine scaffold_6 . biological_region 692176 692176 0.999 - . logic_name=eponine scaffold_6 . biological_region 692275 692277 0.999 - . logic_name=eponine scaffold_6 . biological_region 692302 692307 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 693082 693567 . - . ID=Phyra74203;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000186;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 693082 693567 . - . ID=Phyra74203;Parent=Phyra74203;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 693082 693567 . - 0 ID=Phyra74203;Parent=Phyra74203;rank=1 scaffold_6 . exon 693082 693567 . - . ID=Phyra74203.1;Parent=Phyra74203;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 694511 697191 . - . ID=Phyra74204;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000187;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 694511 697191 . - . ID=Phyra74204;Parent=Phyra74204;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 694511 695856 . - 0 ID=Phyra74204;Parent=Phyra74204;rank=4 scaffold_6 . exon 694511 695856 . - . ID=Phyra74204.4;Parent=Phyra74204;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 695940 696233 . - 0 ID=Phyra74204;Parent=Phyra74204;rank=3 scaffold_6 . exon 695940 696233 . - . ID=Phyra74204.3;Parent=Phyra74204;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 696313 696858 . - 0 ID=Phyra74204;Parent=Phyra74204;rank=2 scaffold_6 . exon 696313 696858 . - . ID=Phyra74204.2;Parent=Phyra74204;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 696927 697191 . - 0 ID=Phyra74204;Parent=Phyra74204;rank=1 scaffold_6 . exon 696927 697191 . - . ID=Phyra74204.1;Parent=Phyra74204;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 698722 699144 . - . ID=Phyra93801;biotype=protein_coding;external_name=C_scaffold_6000023;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 698722 699144 . - . ID=Phyra93801;Parent=Phyra93801;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 698722 699144 . - 0 ID=Phyra93801;Parent=Phyra93801;rank=1 scaffold_6 . exon 698722 699144 . - . ID=Phyra93801.1;Parent=Phyra93801;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 701925 704375 . - . ID=Phyra74206;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000189;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 701925 704375 . - . ID=Phyra74206;Parent=Phyra74206;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 701925 704375 . - 0 ID=Phyra74206;Parent=Phyra74206;rank=1 scaffold_6 . exon 701925 704375 . - . ID=Phyra74206.1;Parent=Phyra74206;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 705037 707903 . - . ID=Phyra74207;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000190;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 705037 707903 . - . ID=Phyra74207;Parent=Phyra74207;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 705037 705090 . - 0 ID=Phyra74207;Parent=Phyra74207;rank=3 scaffold_6 . exon 705037 705090 . - . ID=Phyra74207.3;Parent=Phyra74207;constitutive=1;rank=3 scaffold_6 . CDS 705180 705266 . - 0 ID=Phyra74207;Parent=Phyra74207;rank=2 scaffold_6 . exon 705180 705266 . - . ID=Phyra74207.2;Parent=Phyra74207;constitutive=1;rank=2 scaffold_6 . CDS 705489 707903 . - 0 ID=Phyra74207;Parent=Phyra74207;rank=1 scaffold_6 . exon 705489 707903 . - . ID=Phyra74207.1;Parent=Phyra74207;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 708934 711060 . + . ID=Phyra74208;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000191;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 708934 711060 . + . ID=Phyra74208;Parent=Phyra74208;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 708934 711060 . + 0 ID=Phyra74208;Parent=Phyra74208;rank=1 scaffold_6 . exon 708934 711060 . + . ID=Phyra74208.1;Parent=Phyra74208;constitutive=1;rank=1 scaffold_6 . biological_region 717745 717749 0.999 - . logic_name=eponine scaffold_6 . repeat_region 718841 718848 . ? . description=dust scaffold_6 . biological_region 719077 719082 0.999 - . logic_name=eponine scaffold_6 . repeat_region 719103 719110 . ? . description=dust scaffold_6 . repeat_region 719576 719616 . ? . description=trf scaffold_6 . repeat_region 720673 720680 . ? . description=dust scaffold_6 ensembl protein_coding_gene 712439 713779 . - . ID=Phyra74209;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000192;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 712439 713779 . - . ID=Phyra74209;Parent=Phyra74209;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 712439 713779 . - 0 ID=Phyra74209;Parent=Phyra74209;rank=1 scaffold_6 . exon 712439 713779 . - . ID=Phyra74209.1;Parent=Phyra74209;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 717125 719039 . - . ID=Phyra74210;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000193;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 717125 719039 . - . ID=Phyra74210;Parent=Phyra74210;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 717125 718657 . - 0 ID=Phyra74210;Parent=Phyra74210;rank=3 scaffold_6 . exon 717125 718657 . - . ID=Phyra74210.3;Parent=Phyra74210;constitutive=1;rank=3 scaffold_6 . CDS 718737 718821 . - 0 ID=Phyra74210;Parent=Phyra74210;rank=2 scaffold_6 . exon 718737 718821 . - . ID=Phyra74210.2;Parent=Phyra74210;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 718936 719039 . - 0 ID=Phyra74210;Parent=Phyra74210;rank=1 scaffold_6 . exon 718936 719039 . - . ID=Phyra74210.1;Parent=Phyra74210;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 720068 724172 . + . ID=Phyra74211;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000194;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 720068 724172 . + . ID=Phyra74211;Parent=Phyra74211;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 720068 720070 . + 0 ID=Phyra74211;Parent=Phyra74211;rank=1 scaffold_6 . exon 720068 720070 . + . ID=Phyra74211.1;Parent=Phyra74211;constitutive=1;rank=1 scaffold_6 . CDS 720165 720374 . + 0 ID=Phyra74211;Parent=Phyra74211;rank=2 scaffold_6 . exon 720165 720374 . + . ID=Phyra74211.2;Parent=Phyra74211;constitutive=1;rank=2 scaffold_6 . CDS 720451 724023 . + 0 ID=Phyra74211;Parent=Phyra74211;rank=3 scaffold_6 . exon 720451 724023 . + . ID=Phyra74211.3;Parent=Phyra74211;constitutive=1;rank=3 scaffold_6 . CDS 724131 724172 . + 0 ID=Phyra74211;Parent=Phyra74211;rank=4 scaffold_6 . exon 724131 724172 . + . ID=Phyra74211.4;Parent=Phyra74211;constitutive=1;rank=4 scaffold_6 ensembl protein_coding_gene 726331 726717 . + . ID=Phyra74212;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000195;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 726331 726717 . + . ID=Phyra74212;Parent=Phyra74212;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 726331 726717 . + 0 ID=Phyra74212;Parent=Phyra74212;rank=1 scaffold_6 . exon 726331 726717 . + . ID=Phyra74212.1;Parent=Phyra74212;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 728375 729634 . + . ID=Phyra74213;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000196;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 728375 729634 . + . ID=Phyra74213;Parent=Phyra74213;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 728375 729634 . + 0 ID=Phyra74213;Parent=Phyra74213;rank=1 scaffold_6 . exon 728375 729634 . + . ID=Phyra74213.1;Parent=Phyra74213;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 730621 731880 . - . ID=Phyra74214;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000197;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 730621 731880 . - . ID=Phyra74214;Parent=Phyra74214;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 730621 731880 . - 0 ID=Phyra74214;Parent=Phyra74214;rank=1 scaffold_6 . exon 730621 731880 . - . ID=Phyra74214.1;Parent=Phyra74214;constitutive=1;rank=1 scaffold_6 . biological_region 732405 732412 0.999 - . logic_name=eponine scaffold_6 . biological_region 732493 732497 0.999 + . logic_name=eponine scaffold_6 . biological_region 733249 733254 0.999 - . logic_name=eponine scaffold_6 . biological_region 737069 737070 0.999 + . logic_name=eponine scaffold_6 . biological_region 737091 737094 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 740223 741086 . - . ID=Phyra51437;biotype=protein_coding;external_name=gwEuk.6.129.1;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 740223 741086 . - . ID=Phyra51437;Parent=Phyra51437;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 740223 741086 . - 0 ID=Phyra51437;Parent=Phyra51437;rank=1 scaffold_6 . exon 740223 741086 . - . ID=Phyra51437.1;Parent=Phyra51437;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 733278 734072 . - . ID=Phyra74215;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000198;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 733278 734072 . - . ID=Phyra74215;Parent=Phyra74215;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 733278 734072 . - 0 ID=Phyra74215;Parent=Phyra74215;rank=1 scaffold_6 . exon 733278 734072 . - . ID=Phyra74215.1;Parent=Phyra74215;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 734777 736552 . - . ID=Phyra74216;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000199;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 734777 736552 . - . ID=Phyra74216;Parent=Phyra74216;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 734777 736552 . - 0 ID=Phyra74216;Parent=Phyra74216;rank=1 scaffold_6 . exon 734777 736552 . - . ID=Phyra74216.1;Parent=Phyra74216;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 737024 738696 . + . ID=Phyra93804;biotype=protein_coding;external_name=C_scaffold_6000026;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 737024 738696 . + . ID=Phyra93804;Parent=Phyra93804;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 737024 737332 . + 0 ID=Phyra93804;Parent=Phyra93804;rank=1 scaffold_6 . exon 737024 737332 . + . ID=Phyra93804.1;Parent=Phyra93804;constitutive=1;rank=1 scaffold_6 . CDS 737400 737553 . + 0 ID=Phyra93804;Parent=Phyra93804;rank=2 scaffold_6 . exon 737400 737553 . + . ID=Phyra93804.2;Parent=Phyra93804;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 737616 737680 . + 0 ID=Phyra93804;Parent=Phyra93804;rank=3 scaffold_6 . exon 737616 737680 . + . ID=Phyra93804.3;Parent=Phyra93804;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 737742 737837 . + 0 ID=Phyra93804;Parent=Phyra93804;rank=4 scaffold_6 . exon 737742 737837 . + . ID=Phyra93804.4;Parent=Phyra93804;constitutive=1;rank=4 scaffold_6 . CDS 737933 738090 . + 0 ID=Phyra93804;Parent=Phyra93804;rank=5 scaffold_6 . exon 737933 738090 . + . ID=Phyra93804.5;Parent=Phyra93804;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_6 . CDS 738176 738267 . + 0 ID=Phyra93804;Parent=Phyra93804;rank=6 scaffold_6 . exon 738176 738267 . + . ID=Phyra93804.6;Parent=Phyra93804;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_6 . CDS 738355 738430 . + 0 ID=Phyra93804;Parent=Phyra93804;rank=7 scaffold_6 . exon 738355 738430 . + . ID=Phyra93804.7;Parent=Phyra93804;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_6 . CDS 738507 738696 . + 0 ID=Phyra93804;Parent=Phyra93804;rank=8 scaffold_6 . exon 738507 738696 . + . ID=Phyra93804.8;Parent=Phyra93804;constitutive=1;ensembl_phase=2;rank=8 scaffold_6 . repeat_region 742575 742594 . ? . description=trf scaffold_6 . repeat_region 747117 747124 . ? . description=dust scaffold_6 ensembl protein_coding_gene 741602 745000 . - . ID=Phyra74218;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000201;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 741602 745000 . - . ID=Phyra74218;Parent=Phyra74218;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 741602 742820 . - 0 ID=Phyra74218;Parent=Phyra74218;rank=3 scaffold_6 . exon 741602 742820 . - . ID=Phyra74218.3;Parent=Phyra74218;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 743148 744662 . - 0 ID=Phyra74218;Parent=Phyra74218;rank=2 scaffold_6 . exon 743148 744662 . - . ID=Phyra74218.2;Parent=Phyra74218;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_6 . CDS 744735 745000 . - 0 ID=Phyra74218;Parent=Phyra74218;rank=1 scaffold_6 . exon 744735 745000 . - . ID=Phyra74218.1;Parent=Phyra74218;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 745363 750251 . + . ID=Phyra74219;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000202;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 745363 750251 . + . ID=Phyra74219;Parent=Phyra74219;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 745363 745520 . + 0 ID=Phyra74219;Parent=Phyra74219;rank=1 scaffold_6 . exon 745363 745520 . + . ID=Phyra74219.1;Parent=Phyra74219;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 745588 746267 . + 0 ID=Phyra74219;Parent=Phyra74219;rank=2 scaffold_6 . exon 745588 746267 . + . ID=Phyra74219.2;Parent=Phyra74219;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 746575 750251 . + 0 ID=Phyra74219;Parent=Phyra74219;rank=3 scaffold_6 . exon 746575 750251 . + . ID=Phyra74219.3;Parent=Phyra74219;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 ensembl protein_coding_gene 750502 752154 . - . ID=Phyra74220;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000203;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 750502 752154 . - . ID=Phyra74220;Parent=Phyra74220;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 750502 752154 . - 0 ID=Phyra74220;Parent=Phyra74220;rank=1 scaffold_6 . exon 750502 752154 . - . ID=Phyra74220.1;Parent=Phyra74220;constitutive=1;rank=1 scaffold_6 . biological_region 752040 752044 0.999 - . logic_name=eponine scaffold_6 . biological_region 755059 755064 0.999 - . logic_name=eponine scaffold_6 . biological_region 755379 755380 0.999 + . logic_name=eponine scaffold_6 . biological_region 759625 759629 0.999 + . logic_name=eponine scaffold_6 . biological_region 759699 759700 0.999 - . logic_name=eponine scaffold_6 . biological_region 759751 759752 0.999 + . logic_name=eponine scaffold_6 . biological_region 760628 760632 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 756522 758579 . - . ID=Phyra74221;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000204;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 756522 758579 . - . ID=Phyra74221;Parent=Phyra74221;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 756522 758579 . - 0 ID=Phyra74221;Parent=Phyra74221;rank=1 scaffold_6 . exon 756522 758579 . - . ID=Phyra74221.1;Parent=Phyra74221;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 759590 760246 . + . ID=Phyra74222;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000205;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 759590 760246 . + . ID=Phyra74222;Parent=Phyra74222;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 759590 760246 . + 0 ID=Phyra74222;Parent=Phyra74222;rank=1 scaffold_6 . exon 759590 760246 . + . ID=Phyra74222.1;Parent=Phyra74222;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 760499 762033 . + . ID=Phyra74223;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000206;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 760499 762033 . + . ID=Phyra74223;Parent=Phyra74223;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 760499 761287 . + 0 ID=Phyra74223;Parent=Phyra74223;rank=1 scaffold_6 . exon 760499 761287 . + . ID=Phyra74223.1;Parent=Phyra74223;constitutive=1;rank=1 scaffold_6 . CDS 761363 761434 . + 0 ID=Phyra74223;Parent=Phyra74223;rank=2 scaffold_6 . CDS 761518 761553 . + 0 ID=Phyra74223;Parent=Phyra74223;rank=3 scaffold_6 . CDS 761633 761698 . + 0 ID=Phyra74223;Parent=Phyra74223;rank=4 scaffold_6 . CDS 761764 762033 . + 0 ID=Phyra74223;Parent=Phyra74223;rank=5 scaffold_6 . repeat_region 761608 761619 . ? . description=dust scaffold_6 . repeat_region 763121 763146 . ? . description=trf scaffold_6 . repeat_region 766557 766811 . ? . description=trf scaffold_6 . repeat_region 766827 766949 . ? . description=trf scaffold_6 . repeat_region 767013 767048 . ? . description=trf scaffold_6 . repeat_region 768772 768780 . ? . description=dust scaffold_6 . exon 761363 761434 . + . ID=Phyra74223.2;Parent=Phyra74223;constitutive=1;rank=2 scaffold_6 . exon 761518 761553 . + . ID=Phyra74223.3;Parent=Phyra74223;constitutive=1;rank=3 scaffold_6 . exon 761633 761698 . + . ID=Phyra74223.4;Parent=Phyra74223;constitutive=1;rank=4 scaffold_6 . exon 761764 762033 . + . ID=Phyra74223.5;Parent=Phyra74223;constitutive=1;rank=5 scaffold_6 ensembl protein_coding_gene 763527 767066 . + . ID=Phyra74224;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000207;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 763527 767066 . + . ID=Phyra74224;Parent=Phyra74224;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 763527 767066 . + 0 ID=Phyra74224;Parent=Phyra74224;rank=1 scaffold_6 . exon 763527 767066 . + . ID=Phyra74224.1;Parent=Phyra74224;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 767288 768409 . - . ID=Phyra74225;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000208;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 767288 768409 . - . ID=Phyra74225;Parent=Phyra74225;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 767288 768409 . - 0 ID=Phyra74225;Parent=Phyra74225;rank=1 scaffold_6 . exon 767288 768409 . - . ID=Phyra74225.1;Parent=Phyra74225;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 769078 769773 . + . ID=Phyra74226;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000209;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 769078 769773 . + . ID=Phyra74226;Parent=Phyra74226;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 769078 769773 . + 0 ID=Phyra74226;Parent=Phyra74226;rank=1 scaffold_6 . exon 769078 769773 . + . ID=Phyra74226.1;Parent=Phyra74226;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 770392 771075 . - . ID=Phyra74227;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000210;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 770392 771075 . - . ID=Phyra74227;Parent=Phyra74227;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 770392 771075 . - 0 ID=Phyra74227;Parent=Phyra74227;rank=1 scaffold_6 . exon 770392 771075 . - . ID=Phyra74227.1;Parent=Phyra74227;constitutive=1;rank=1 scaffold_6 . biological_region 770823 770828 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 772447 773568 . + . ID=Phyra74228;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000211;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 772447 773568 . + . ID=Phyra74228;Parent=Phyra74228;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 772447 773568 . + 0 ID=Phyra74228;Parent=Phyra74228;rank=1 scaffold_6 . exon 772447 773568 . + . ID=Phyra74228.1;Parent=Phyra74228;constitutive=1;rank=1 scaffold_6 . repeat_region 777152 786449 . ? . description=dust scaffold_6 . biological_region 790456 790457 0.999 - . logic_name=eponine scaffold_6 . biological_region 797060 797064 0.999 - . logic_name=eponine scaffold_6 . repeat_region 800240 800305 . ? . description=trf scaffold_6 . repeat_region 804056 804097 . ? . description=trf scaffold_6 . repeat_region 805305 808245 . ? . description=dust scaffold_6 . repeat_region 809637 809670 . ? . description=trf scaffold_6 ensembl protein_coding_gene 802376 803184 . - . ID=Phyra51442;biotype=protein_coding;external_name=gwEuk.6.134.1;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 802376 803184 . - . ID=Phyra51442;Parent=Phyra51442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 802376 802848 . - 0 ID=Phyra51442;Parent=Phyra51442;rank=2 scaffold_6 . exon 802376 802848 . - . ID=Phyra51442.2;Parent=Phyra51442;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 802911 803184 . - 0 ID=Phyra51442;Parent=Phyra51442;rank=1 scaffold_6 . exon 802911 803184 . - . ID=Phyra51442.1;Parent=Phyra51442;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 804219 805100 . - . ID=Phyra74229;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_6000212;logic_name=jgi_phyra1 scaffold_6 ensembl transcript 804219 805100 . - . ID=Phyra74229;Parent=Phyra74229;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_6 . CDS 804219 804559 . - 0 ID=Phyra74229;Parent=Phyra74229;rank=2 scaffold_6 . exon 804219 804559 . - . ID=Phyra74229.2;Parent=Phyra74229;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 804584 805100 . - 0 ID=Phyra74229;Parent=Phyra74229;rank=1 scaffold_6 . exon 804584 805100 . - . ID=Phyra74229.1;Parent=Phyra74229;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_5 1 827719 scaffold_5 ensembl protein_coding_gene 6 1283 . + . ID=Phyra73794;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000001;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 6 1283 . + . ID=Phyra73794;Parent=Phyra73794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 6 1283 . + 0 ID=Phyra73794;Parent=Phyra73794;rank=1 scaffold_5 . exon 6 1283 . + . ID=Phyra73794.1;Parent=Phyra73794;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 3183 5958 . + . ID=Phyra73796;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000003;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 3183 5958 . + . ID=Phyra73796;Parent=Phyra73796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 3183 3545 . + 0 ID=Phyra73796;Parent=Phyra73796;rank=1 scaffold_5 . exon 3183 3545 . + . ID=Phyra73796.1;Parent=Phyra73796;constitutive=1;rank=1 scaffold_5 . CDS 3638 4066 . + 0 ID=Phyra73796;Parent=Phyra73796;rank=2 scaffold_5 . exon 3638 4066 . + . ID=Phyra73796.2;Parent=Phyra73796;constitutive=1;rank=2 scaffold_5 . CDS 4976 5191 . + 0 ID=Phyra73796;Parent=Phyra73796;rank=3 scaffold_5 . exon 4976 5191 . + . ID=Phyra73796.3;Parent=Phyra73796;constitutive=1;rank=3 scaffold_5 . CDS 5262 5463 . + 0 ID=Phyra73796;Parent=Phyra73796;rank=4 scaffold_5 . exon 5262 5463 . + . ID=Phyra73796.4;Parent=Phyra73796;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 5486 5958 . + 0 ID=Phyra73796;Parent=Phyra73796;rank=5 scaffold_5 . exon 5486 5958 . + . ID=Phyra73796.5;Parent=Phyra73796;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 ensembl protein_coding_gene 1586 2885 . + . ID=Phyra93710;biotype=protein_coding;external_name=C_scaffold_5000001;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 1586 2885 . + . ID=Phyra93710;Parent=Phyra93710;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 1586 1998 . + 0 ID=Phyra93710;Parent=Phyra93710;rank=1 scaffold_5 . exon 1586 1998 . + . ID=Phyra93710.1;Parent=Phyra93710;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 2078 2363 . + 0 ID=Phyra93710;Parent=Phyra93710;rank=2 scaffold_5 . exon 2078 2363 . + . ID=Phyra93710.2;Parent=Phyra93710;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 2499 2885 . + 0 ID=Phyra93710;Parent=Phyra93710;rank=3 scaffold_5 . exon 2499 2885 . + . ID=Phyra93710.3;Parent=Phyra93710;constitutive=1;rank=3 scaffold_5 . repeat_region 13895 13937 . ? . description=dust scaffold_5 . repeat_region 14677 14714 . ? . description=trf scaffold_5 ensembl protein_coding_gene 11044 12886 . + . ID=Phyra71132;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000001;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 11044 12886 . + . ID=Phyra71132;Parent=Phyra71132;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 11044 11086 . + 0 ID=Phyra71132;Parent=Phyra71132;rank=1 scaffold_5 . exon 11044 11086 . + . ID=Phyra71132.1;Parent=Phyra71132;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 11156 11268 . + 0 ID=Phyra71132;Parent=Phyra71132;rank=2 scaffold_5 . exon 11156 11268 . + . ID=Phyra71132.2;Parent=Phyra71132;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 11347 11464 . + 0 ID=Phyra71132;Parent=Phyra71132;rank=3 scaffold_5 . exon 11347 11464 . + . ID=Phyra71132.3;Parent=Phyra71132;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 11536 11897 . + 0 ID=Phyra71132;Parent=Phyra71132;rank=4 scaffold_5 . exon 11536 11897 . + . ID=Phyra71132.4;Parent=Phyra71132;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 11972 12173 . + 0 ID=Phyra71132;Parent=Phyra71132;rank=5 scaffold_5 . exon 11972 12173 . + . ID=Phyra71132.5;Parent=Phyra71132;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_5 . CDS 12266 12518 . + 0 ID=Phyra71132;Parent=Phyra71132;rank=6 scaffold_5 . exon 12266 12518 . + . ID=Phyra71132.6;Parent=Phyra71132;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_5 . CDS 12595 12886 . + 0 ID=Phyra71132;Parent=Phyra71132;rank=7 scaffold_5 . exon 12595 12886 . + . ID=Phyra71132.7;Parent=Phyra71132;constitutive=1;ensembl_phase=2;rank=7 scaffold_5 ensembl protein_coding_gene 13008 14485 . - . ID=Phyra93712;biotype=protein_coding;external_name=C_scaffold_5000003;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 13008 14485 . - . ID=Phyra93712;Parent=Phyra93712;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 13008 13113 . - 0 ID=Phyra93712;Parent=Phyra93712;rank=8 scaffold_5 . exon 13008 13113 . - . ID=Phyra93712.8;Parent=Phyra93712;constitutive=1;ensembl_phase=2;rank=8 scaffold_5 . CDS 13378 13553 . - 0 ID=Phyra93712;Parent=Phyra93712;rank=7 scaffold_5 . exon 13378 13553 . - . ID=Phyra93712.7;Parent=Phyra93712;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_5 . CDS 13621 13769 . - 0 ID=Phyra93712;Parent=Phyra93712;rank=6 scaffold_5 . exon 13621 13769 . - . ID=Phyra93712.6;Parent=Phyra93712;constitutive=1;ensembl_phase=1;rank=6 scaffold_5 . CDS 13835 13872 . - 0 ID=Phyra93712;Parent=Phyra93712;rank=5 scaffold_5 . exon 13835 13872 . - . ID=Phyra93712.5;Parent=Phyra93712;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_5 . CDS 14016 14088 . - 0 ID=Phyra93712;Parent=Phyra93712;rank=4 scaffold_5 . exon 14016 14088 . - . ID=Phyra93712.4;Parent=Phyra93712;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_5 . CDS 14188 14283 . - 0 ID=Phyra93712;Parent=Phyra93712;rank=3 scaffold_5 . exon 14188 14283 . - . ID=Phyra93712.3;Parent=Phyra93712;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 14387 14453 . - 0 ID=Phyra93712;Parent=Phyra93712;rank=2 scaffold_5 . exon 14387 14453 . - . ID=Phyra93712.2;Parent=Phyra93712;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 14474 14485 . - 0 ID=Phyra93712;Parent=Phyra93712;rank=1 scaffold_5 . exon 14474 14485 . - . ID=Phyra93712.1;Parent=Phyra93712;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 14860 23225 . + . ID=Phyra93715;biotype=protein_coding;external_name=C_scaffold_5000006;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 14860 23225 . + . ID=Phyra93715;Parent=Phyra93715;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 14860 15231 . + 0 ID=Phyra93715;Parent=Phyra93715;rank=1 scaffold_5 . exon 14860 15231 . + . ID=Phyra93715.1;Parent=Phyra93715;constitutive=1;rank=1 scaffold_5 . CDS 15271 15764 . + 0 ID=Phyra93715;Parent=Phyra93715;rank=2 scaffold_5 . exon 15271 15764 . + . ID=Phyra93715.2;Parent=Phyra93715;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 15827 16095 . + 0 ID=Phyra93715;Parent=Phyra93715;rank=3 scaffold_5 . exon 15827 16095 . + . ID=Phyra93715.3;Parent=Phyra93715;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 16906 17021 . + 0 ID=Phyra93715;Parent=Phyra93715;rank=4 scaffold_5 . exon 16906 17021 . + . ID=Phyra93715.4;Parent=Phyra93715;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 17061 17834 . + 0 ID=Phyra93715;Parent=Phyra93715;rank=5 scaffold_5 . exon 17061 17834 . + . ID=Phyra93715.5;Parent=Phyra93715;constitutive=1;rank=5 scaffold_5 . CDS 18004 18111 . + 0 ID=Phyra93715;Parent=Phyra93715;rank=6 scaffold_5 . exon 18004 18111 . + . ID=Phyra93715.6;Parent=Phyra93715;constitutive=1;rank=6 scaffold_5 . CDS 18148 19275 . + 0 ID=Phyra93715;Parent=Phyra93715;rank=7 scaffold_5 . exon 18148 19275 . + . ID=Phyra93715.7;Parent=Phyra93715;constitutive=1;rank=7 scaffold_5 . CDS 19303 19540 . + 0 ID=Phyra93715;Parent=Phyra93715;rank=8 scaffold_5 . exon 19303 19540 . + . ID=Phyra93715.8;Parent=Phyra93715;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_5 . CDS 19609 19650 . + 0 ID=Phyra93715;Parent=Phyra93715;rank=9 scaffold_5 . exon 19609 19650 . + . ID=Phyra93715.9;Parent=Phyra93715;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_5 . CDS 19780 20294 . + 0 ID=Phyra93715;Parent=Phyra93715;rank=10 scaffold_5 . exon 19780 20294 . + . ID=Phyra93715.10;Parent=Phyra93715;constitutive=1;ensembl_phase=1;rank=10 scaffold_5 . CDS 20526 22034 . + 0 ID=Phyra93715;Parent=Phyra93715;rank=11 scaffold_5 . CDS 22119 22443 . + 0 ID=Phyra93715;Parent=Phyra93715;rank=12 scaffold_5 . CDS 22465 22793 . + 0 ID=Phyra93715;Parent=Phyra93715;rank=13 scaffold_5 . CDS 22842 23225 . + 0 ID=Phyra93715;Parent=Phyra93715;rank=14 scaffold_5 ensembl protein_coding_gene 23547 27638 . + . ID=Phyra73801;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000008;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 23547 27638 . + . ID=Phyra73801;Parent=Phyra73801;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 23547 27638 . + 0 ID=Phyra73801;Parent=Phyra73801;rank=1 scaffold_5 . exon 23547 27638 . + . ID=Phyra73801.1;Parent=Phyra73801;constitutive=1;rank=1 scaffold_5 . exon 20526 22034 . + . ID=Phyra93715.11;Parent=Phyra93715;constitutive=1;rank=11 scaffold_5 . exon 22119 22443 . + . ID=Phyra93715.12;Parent=Phyra93715;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_5 . exon 22465 22793 . + . ID=Phyra93715.13;Parent=Phyra93715;constitutive=1;ensembl_phase=1;rank=13 scaffold_5 . exon 22842 23225 . + . ID=Phyra93715.14;Parent=Phyra93715;constitutive=1;rank=14 scaffold_5 . biological_region 30906 30906 0.999 + . logic_name=eponine scaffold_5 . repeat_region 31557 31565 . ? . description=dust scaffold_5 . repeat_region 31635 31647 . ? . description=dust scaffold_5 . biological_region 33084 33085 0.999 - . logic_name=eponine scaffold_5 . biological_region 33244 33250 0.999 + . logic_name=eponine scaffold_5 . biological_region 33276 33280 0.999 - . logic_name=eponine scaffold_5 . biological_region 33336 33340 0.999 - . logic_name=eponine scaffold_5 . repeat_region 37013 37058 . - . description=GypsyPi-1c_LTR scaffold_5 . repeat_region 38175 38261 . ? . description=trf scaffold_5 . repeat_region 38677 39435 . ? . description=dust scaffold_5 . repeat_region 39741 39777 . ? . description=trf scaffold_5 ensembl protein_coding_gene 35688 36685 . - . ID=Phyra49988;biotype=protein_coding;external_name=gwEuk.5.208.1;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 35688 36685 . - . ID=Phyra49988;Parent=Phyra49988;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 35688 35959 . - 0 ID=Phyra49988;Parent=Phyra49988;rank=2 scaffold_5 . exon 35688 35959 . - . ID=Phyra49988.2;Parent=Phyra49988;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 36022 36685 . - 0 ID=Phyra49988;Parent=Phyra49988;rank=1 scaffold_5 . exon 36022 36685 . - . ID=Phyra49988.1;Parent=Phyra49988;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 30678 31220 . + . ID=Phyra73802;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000009;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 30678 31220 . + . ID=Phyra73802;Parent=Phyra73802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 30678 31220 . + 0 ID=Phyra73802;Parent=Phyra73802;rank=1 scaffold_5 . exon 30678 31220 . + . ID=Phyra73802.1;Parent=Phyra73802;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 32038 33366 . + . ID=Phyra73803;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000010;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 32038 33366 . + . ID=Phyra73803;Parent=Phyra73803;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 32038 33366 . + 0 ID=Phyra73803;Parent=Phyra73803;rank=1 scaffold_5 . exon 32038 33366 . + . ID=Phyra73803.1;Parent=Phyra73803;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 48251 49873 . - . ID=Phyra49991;biotype=protein_coding;external_name=gwEuk.5.211.1;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 48251 49873 . - . ID=Phyra49991;Parent=Phyra49991;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 48251 49873 . - 0 ID=Phyra49991;Parent=Phyra49991;rank=1 scaffold_5 . exon 48251 49873 . - . ID=Phyra49991.1;Parent=Phyra49991;constitutive=1;rank=1 scaffold_5 . repeat_region 50582 50594 . ? . description=dust scaffold_5 . repeat_region 53082 53098 . ? . description=dust scaffold_5 . repeat_region 53354 53464 . ? . description=trf scaffold_5 ensembl protein_coding_gene 50659 52611 . - . ID=Phyra73805;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000012;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 50659 52611 . - . ID=Phyra73805;Parent=Phyra73805;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 50659 52611 . - 0 ID=Phyra73805;Parent=Phyra73805;rank=1 scaffold_5 . exon 50659 52611 . - . ID=Phyra73805.1;Parent=Phyra73805;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 58001 64621 . - . ID=Phyra73806;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000013;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 58001 64621 . - . ID=Phyra73806;Parent=Phyra73806;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 58001 58138 . - 0 ID=Phyra73806;Parent=Phyra73806;rank=6 scaffold_5 . exon 58001 58138 . - . ID=Phyra73806.6;Parent=Phyra73806;constitutive=1;rank=6 scaffold_5 . CDS 58223 58500 . - 0 ID=Phyra73806;Parent=Phyra73806;rank=5 scaffold_5 . exon 58223 58500 . - . ID=Phyra73806.5;Parent=Phyra73806;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 58870 62929 . - 0 ID=Phyra73806;Parent=Phyra73806;rank=4 scaffold_5 . exon 58870 62929 . - . ID=Phyra73806.4;Parent=Phyra73806;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 63092 63895 . - 0 ID=Phyra73806;Parent=Phyra73806;rank=3 scaffold_5 . CDS 64174 64256 . - 0 ID=Phyra73806;Parent=Phyra73806;rank=2 scaffold_5 . CDS 64312 64621 . - 0 ID=Phyra73806;Parent=Phyra73806;rank=1 scaffold_5 . biological_region 61819 61820 0.999 + . logic_name=eponine scaffold_5 . biological_region 64988 64993 0.999 + . logic_name=eponine scaffold_5 . exon 63092 63895 . - . ID=Phyra73806.3;Parent=Phyra73806;constitutive=1;rank=3 scaffold_5 . exon 64174 64256 . - . ID=Phyra73806.2;Parent=Phyra73806;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . exon 64312 64621 . - . ID=Phyra73806.1;Parent=Phyra73806;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 69737 72583 . + . ID=Phyra73807;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000014;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 69737 72583 . + . ID=Phyra73807;Parent=Phyra73807;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 69737 72583 . + 0 ID=Phyra73807;Parent=Phyra73807;rank=1 scaffold_5 . exon 69737 72583 . + . ID=Phyra73807.1;Parent=Phyra73807;constitutive=1;rank=1 scaffold_5 . repeat_region 72721 72780 . ? . description=dust scaffold_5 . repeat_region 74923 74931 . ? . description=dust scaffold_5 ensembl protein_coding_gene 72730 74223 . - . ID=Phyra73808;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000015;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 72730 74223 . - . ID=Phyra73808;Parent=Phyra73808;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 72730 72864 . - 0 ID=Phyra73808;Parent=Phyra73808;rank=7 scaffold_5 . exon 72730 72864 . - . ID=Phyra73808.7;Parent=Phyra73808;constitutive=1;rank=7 scaffold_5 . CDS 72926 73051 . - 0 ID=Phyra73808;Parent=Phyra73808;rank=6 scaffold_5 . exon 72926 73051 . - . ID=Phyra73808.6;Parent=Phyra73808;constitutive=1;rank=6 scaffold_5 . CDS 73259 73318 . - 0 ID=Phyra73808;Parent=Phyra73808;rank=5 scaffold_5 . exon 73259 73318 . - . ID=Phyra73808.5;Parent=Phyra73808;constitutive=1;rank=5 scaffold_5 . CDS 73379 73594 . - 0 ID=Phyra73808;Parent=Phyra73808;rank=4 scaffold_5 . exon 73379 73594 . - . ID=Phyra73808.4;Parent=Phyra73808;constitutive=1;rank=4 scaffold_5 . CDS 73657 73713 . - 0 ID=Phyra73808;Parent=Phyra73808;rank=3 scaffold_5 . exon 73657 73713 . - . ID=Phyra73808.3;Parent=Phyra73808;constitutive=1;rank=3 scaffold_5 . CDS 73981 74056 . - 0 ID=Phyra73808;Parent=Phyra73808;rank=2 scaffold_5 . exon 73981 74056 . - . ID=Phyra73808.2;Parent=Phyra73808;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 74126 74223 . - 0 ID=Phyra73808;Parent=Phyra73808;rank=1 scaffold_5 . exon 74126 74223 . - . ID=Phyra73808.1;Parent=Phyra73808;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 77222 80608 . + . ID=Phyra73809;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000016;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 77222 80608 . + . ID=Phyra73809;Parent=Phyra73809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 77222 78549 . + 0 ID=Phyra73809;Parent=Phyra73809;rank=1 scaffold_5 . exon 77222 78549 . + . ID=Phyra73809.1;Parent=Phyra73809;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 78618 78933 . + 0 ID=Phyra73809;Parent=Phyra73809;rank=2 scaffold_5 . exon 78618 78933 . + . ID=Phyra73809.2;Parent=Phyra73809;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 79026 79214 . + 0 ID=Phyra73809;Parent=Phyra73809;rank=3 scaffold_5 . exon 79026 79214 . + . ID=Phyra73809.3;Parent=Phyra73809;constitutive=1;rank=3 scaffold_5 . CDS 79645 79855 . + 0 ID=Phyra73809;Parent=Phyra73809;rank=4 scaffold_5 . exon 79645 79855 . + . ID=Phyra73809.4;Parent=Phyra73809;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 80182 80278 . + 0 ID=Phyra73809;Parent=Phyra73809;rank=5 scaffold_5 . CDS 80350 80608 . + 0 ID=Phyra73809;Parent=Phyra73809;rank=6 scaffold_5 . biological_region 82398 82405 0.999 - . logic_name=eponine scaffold_5 . biological_region 82802 82804 0.999 - . logic_name=eponine scaffold_5 . biological_region 82861 82866 0.999 + . logic_name=eponine scaffold_5 . biological_region 82908 82912 0.999 + . logic_name=eponine scaffold_5 . biological_region 82929 82932 0.999 + . logic_name=eponine scaffold_5 . biological_region 82942 82944 0.999 + . logic_name=eponine scaffold_5 . biological_region 82992 82996 0.999 + . logic_name=eponine scaffold_5 . biological_region 83027 83034 0.999 - . logic_name=eponine scaffold_5 . biological_region 83037 83044 0.999 + . logic_name=eponine scaffold_5 . biological_region 83040 83043 0.999 - . logic_name=eponine scaffold_5 . biological_region 83060 83069 0.999 + . logic_name=eponine scaffold_5 . biological_region 83124 83129 0.999 + . logic_name=eponine scaffold_5 . biological_region 83127 83132 0.999 - . logic_name=eponine scaffold_5 . biological_region 83137 83139 0.999 - . logic_name=eponine scaffold_5 . biological_region 83148 83155 0.999 + . logic_name=eponine scaffold_5 . biological_region 83160 83165 0.999 - . logic_name=eponine scaffold_5 . biological_region 83178 83188 0.999 - . logic_name=eponine scaffold_5 . biological_region 83371 83372 0.999 + . logic_name=eponine scaffold_5 . biological_region 83394 83398 0.999 + . logic_name=eponine scaffold_5 . biological_region 83447 83450 0.999 + . logic_name=eponine scaffold_5 . biological_region 83470 83475 0.999 - . logic_name=eponine scaffold_5 . biological_region 83491 83500 0.999 - . logic_name=eponine scaffold_5 . biological_region 83525 83529 0.999 - . logic_name=eponine scaffold_5 . biological_region 83545 83550 0.999 - . logic_name=eponine scaffold_5 . biological_region 83550 83555 0.999 + . logic_name=eponine scaffold_5 . biological_region 83563 83569 0.999 - . logic_name=eponine scaffold_5 . biological_region 83581 83583 0.999 + . logic_name=eponine scaffold_5 . repeat_region 83687 83764 . + . description=(CTG)n scaffold_5 . repeat_region 83708 83737 . ? . description=trf scaffold_5 . repeat_region 83713 83744 . ? . description=trf scaffold_5 . repeat_region 86064 86088 . ? . description=trf scaffold_5 ensembl protein_coding_gene 80813 82561 . - . ID=Phyra71133;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000002;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 80813 82561 . - . ID=Phyra71133;Parent=Phyra71133;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 80813 82456 . - 0 ID=Phyra71133;Parent=Phyra71133;rank=2 scaffold_5 . exon 80813 82456 . - . ID=Phyra71133.2;Parent=Phyra71133;constitutive=1;rank=2 scaffold_5 . CDS 82502 82561 . - 0 ID=Phyra71133;Parent=Phyra71133;rank=1 scaffold_5 . exon 82502 82561 . - . ID=Phyra71133.1;Parent=Phyra71133;constitutive=1;rank=1 scaffold_5 . exon 80182 80278 . + . ID=Phyra73809.5;Parent=Phyra73809;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_5 . exon 80350 80608 . + . ID=Phyra73809.6;Parent=Phyra73809;constitutive=1;ensembl_phase=2;rank=6 scaffold_5 ensembl protein_coding_gene 82708 85174 . + . ID=Phyra73811;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000018;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 82708 85174 . + . ID=Phyra73811;Parent=Phyra73811;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 82708 84672 . + 0 ID=Phyra73811;Parent=Phyra73811;rank=1 scaffold_5 . exon 82708 84672 . + . ID=Phyra73811.1;Parent=Phyra73811;constitutive=1;rank=1 scaffold_5 . CDS 84749 84871 . + 0 ID=Phyra73811;Parent=Phyra73811;rank=2 scaffold_5 . exon 84749 84871 . + . ID=Phyra73811.2;Parent=Phyra73811;constitutive=1;rank=2 scaffold_5 . CDS 84940 85017 . + 0 ID=Phyra73811;Parent=Phyra73811;rank=3 scaffold_5 . exon 84940 85017 . + . ID=Phyra73811.3;Parent=Phyra73811;constitutive=1;rank=3 scaffold_5 . CDS 85088 85174 . + 0 ID=Phyra73811;Parent=Phyra73811;rank=4 scaffold_5 . exon 85088 85174 . + . ID=Phyra73811.4;Parent=Phyra73811;constitutive=1;rank=4 scaffold_5 ensembl protein_coding_gene 86093 90452 . - . ID=Phyra73812;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000019;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 86093 90452 . - . ID=Phyra73812;Parent=Phyra73812;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 86093 86626 . - 0 ID=Phyra73812;Parent=Phyra73812;rank=5 scaffold_5 . exon 86093 86626 . - . ID=Phyra73812.5;Parent=Phyra73812;constitutive=1;rank=5 scaffold_5 . CDS 86701 86759 . - 0 ID=Phyra73812;Parent=Phyra73812;rank=4 scaffold_5 . exon 86701 86759 . - . ID=Phyra73812.4;Parent=Phyra73812;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 86826 87840 . - 0 ID=Phyra73812;Parent=Phyra73812;rank=3 scaffold_5 . exon 86826 87840 . - . ID=Phyra73812.3;Parent=Phyra73812;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 88077 90288 . - 0 ID=Phyra73812;Parent=Phyra73812;rank=2 scaffold_5 . exon 88077 90288 . - . ID=Phyra73812.2;Parent=Phyra73812;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 90358 90452 . - 0 ID=Phyra73812;Parent=Phyra73812;rank=1 scaffold_5 ensembl protein_coding_gene 94287 95960 . - . ID=Phyra71134;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000003;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 94287 95960 . - . ID=Phyra71134;Parent=Phyra71134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 94287 95960 . - 0 ID=Phyra71134;Parent=Phyra71134;rank=1 scaffold_5 . exon 94287 95960 . - . ID=Phyra71134.1;Parent=Phyra71134;constitutive=1;rank=1 scaffold_5 . exon 90358 90452 . - . ID=Phyra73812.1;Parent=Phyra73812;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 97810 100020 . + . ID=Phyra73815;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000022;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 97810 100020 . + . ID=Phyra73815;Parent=Phyra73815;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 97810 100020 . + 0 ID=Phyra73815;Parent=Phyra73815;rank=1 scaffold_5 . exon 97810 100020 . + . ID=Phyra73815.1;Parent=Phyra73815;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 93291 94112 . - . ID=Phyra93719;biotype=protein_coding;external_name=C_scaffold_5000010;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 93291 94112 . - . ID=Phyra93719;Parent=Phyra93719;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 93291 94112 . - 0 ID=Phyra93719;Parent=Phyra93719;rank=1 scaffold_5 . exon 93291 94112 . - . ID=Phyra93719.1;Parent=Phyra93719;constitutive=1;rank=1 scaffold_5 . repeat_region 102624 102648 . ? . description=trf scaffold_5 . repeat_region 102624 102648 . ? . description=dust scaffold_5 . biological_region 106445 106446 0.999 - . logic_name=eponine scaffold_5 . biological_region 106716 106717 0.999 - . logic_name=eponine scaffold_5 . biological_region 106797 106798 0.999 - . logic_name=eponine scaffold_5 . biological_region 109564 109570 0.999 - . logic_name=eponine scaffold_5 . biological_region 109592 109595 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 107641 109245 . - . ID=Phyra50011;biotype=protein_coding;external_name=gwEuk.5.231.1;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 107641 109245 . - . ID=Phyra50011;Parent=Phyra50011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 107641 108306 . - 0 ID=Phyra50011;Parent=Phyra50011;rank=4 scaffold_5 . exon 107641 108306 . - . ID=Phyra50011.4;Parent=Phyra50011;constitutive=1;rank=4 scaffold_5 . CDS 108375 108499 . - 0 ID=Phyra50011;Parent=Phyra50011;rank=3 scaffold_5 . exon 108375 108499 . - . ID=Phyra50011.3;Parent=Phyra50011;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 108579 108723 . - 0 ID=Phyra50011;Parent=Phyra50011;rank=2 scaffold_5 . exon 108579 108723 . - . ID=Phyra50011.2;Parent=Phyra50011;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 108817 109245 . - 0 ID=Phyra50011;Parent=Phyra50011;rank=1 scaffold_5 . exon 108817 109245 . - . ID=Phyra50011.1;Parent=Phyra50011;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 106287 107279 . - . ID=Phyra71135;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000004;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 106287 107279 . - . ID=Phyra71135;Parent=Phyra71135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 106287 107279 . - 0 ID=Phyra71135;Parent=Phyra71135;rank=1 scaffold_5 . exon 106287 107279 . - . ID=Phyra71135.1;Parent=Phyra71135;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 102357 103002 . - . ID=Phyra73816;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000023;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 102357 103002 . - . ID=Phyra73816;Parent=Phyra73816;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 102357 102590 . - 0 ID=Phyra73816;Parent=Phyra73816;rank=3 scaffold_5 . exon 102357 102590 . - . ID=Phyra73816.3;Parent=Phyra73816;constitutive=1;rank=3 scaffold_5 . CDS 102649 102819 . - 0 ID=Phyra73816;Parent=Phyra73816;rank=2 scaffold_5 . exon 102649 102819 . - . ID=Phyra73816.2;Parent=Phyra73816;constitutive=1;rank=2 scaffold_5 . CDS 102886 103002 . - 0 ID=Phyra73816;Parent=Phyra73816;rank=1 scaffold_5 . exon 102886 103002 . - . ID=Phyra73816.1;Parent=Phyra73816;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 103185 104293 . + . ID=Phyra73817;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000024;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 103185 104293 . + . ID=Phyra73817;Parent=Phyra73817;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 103185 103337 . + 0 ID=Phyra73817;Parent=Phyra73817;rank=1 scaffold_5 . exon 103185 103337 . + . ID=Phyra73817.1;Parent=Phyra73817;constitutive=1;rank=1 scaffold_5 . CDS 103414 103487 . + 0 ID=Phyra73817;Parent=Phyra73817;rank=2 scaffold_5 . exon 103414 103487 . + . ID=Phyra73817.2;Parent=Phyra73817;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 103589 103667 . + 0 ID=Phyra73817;Parent=Phyra73817;rank=3 scaffold_5 . exon 103589 103667 . + . ID=Phyra73817.3;Parent=Phyra73817;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 103748 103979 . + 0 ID=Phyra73817;Parent=Phyra73817;rank=4 scaffold_5 . exon 103748 103979 . + . ID=Phyra73817.4;Parent=Phyra73817;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 104059 104128 . + 0 ID=Phyra73817;Parent=Phyra73817;rank=5 scaffold_5 . exon 104059 104128 . + . ID=Phyra73817.5;Parent=Phyra73817;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_5 . CDS 104206 104293 . + 0 ID=Phyra73817;Parent=Phyra73817;rank=6 scaffold_5 . exon 104206 104293 . + . ID=Phyra73817.6;Parent=Phyra73817;constitutive=1;ensembl_phase=2;rank=6 scaffold_5 ensembl protein_coding_gene 104598 105488 . - . ID=Phyra73818;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000025;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 104598 105488 . - . ID=Phyra73818;Parent=Phyra73818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 104598 105488 . - 0 ID=Phyra73818;Parent=Phyra73818;rank=1 scaffold_5 . exon 104598 105488 . - . ID=Phyra73818.1;Parent=Phyra73818;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 113742 121133 . + . ID=Phyra50021;biotype=protein_coding;external_name=gwEuk.5.241.1;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 113742 121133 . + . ID=Phyra50021;Parent=Phyra50021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 113742 114959 . + 0 ID=Phyra50021;Parent=Phyra50021;rank=1 scaffold_5 . exon 113742 114959 . + . ID=Phyra50021.1;Parent=Phyra50021;constitutive=1;rank=1 scaffold_5 . CDS 115005 117360 . + 0 ID=Phyra50021;Parent=Phyra50021;rank=2 scaffold_5 . exon 115005 117360 . + . ID=Phyra50021.2;Parent=Phyra50021;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 117439 118782 . + 0 ID=Phyra50021;Parent=Phyra50021;rank=3 scaffold_5 . exon 117439 118782 . + . ID=Phyra50021.3;Parent=Phyra50021;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 118840 119666 . + 0 ID=Phyra50021;Parent=Phyra50021;rank=4 scaffold_5 . exon 118840 119666 . + . ID=Phyra50021.4;Parent=Phyra50021;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 119703 120336 . + 0 ID=Phyra50021;Parent=Phyra50021;rank=5 scaffold_5 . CDS 120376 121133 . + 0 ID=Phyra50021;Parent=Phyra50021;rank=6 scaffold_5 ensembl protein_coding_gene 109949 111167 . - . ID=Phyra93721;biotype=protein_coding;external_name=C_scaffold_5000012;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 109949 111167 . - . ID=Phyra93721;Parent=Phyra93721;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 109949 110092 . - 0 ID=Phyra93721;Parent=Phyra93721;rank=4 scaffold_5 . exon 109949 110092 . - . ID=Phyra93721.4;Parent=Phyra93721;constitutive=1;rank=4 scaffold_5 . CDS 110173 110723 . - 0 ID=Phyra93721;Parent=Phyra93721;rank=3 scaffold_5 . exon 110173 110723 . - . ID=Phyra93721.3;Parent=Phyra93721;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 110824 110968 . - 0 ID=Phyra93721;Parent=Phyra93721;rank=2 scaffold_5 . exon 110824 110968 . - . ID=Phyra93721.2;Parent=Phyra93721;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 111036 111167 . - 0 ID=Phyra93721;Parent=Phyra93721;rank=1 scaffold_5 . exon 111036 111167 . - . ID=Phyra93721.1;Parent=Phyra93721;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 111333 113443 . + . ID=Phyra93722;biotype=protein_coding;external_name=C_scaffold_5000013;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 111333 113443 . + . ID=Phyra93722;Parent=Phyra93722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 111333 111744 . + 0 ID=Phyra93722;Parent=Phyra93722;rank=1 scaffold_5 . exon 111333 111744 . + . ID=Phyra93722.1;Parent=Phyra93722;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 111865 112016 . + 0 ID=Phyra93722;Parent=Phyra93722;rank=2 scaffold_5 . exon 111865 112016 . + . ID=Phyra93722.2;Parent=Phyra93722;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 112047 112151 . + 0 ID=Phyra93722;Parent=Phyra93722;rank=3 scaffold_5 . exon 112047 112151 . + . ID=Phyra93722.3;Parent=Phyra93722;constitutive=1;rank=3 scaffold_5 . CDS 112176 112263 . + 0 ID=Phyra93722;Parent=Phyra93722;rank=4 scaffold_5 . exon 112176 112263 . + . ID=Phyra93722.4;Parent=Phyra93722;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 112462 112665 . + 0 ID=Phyra93722;Parent=Phyra93722;rank=5 scaffold_5 . exon 112462 112665 . + . ID=Phyra93722.5;Parent=Phyra93722;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 112700 112746 . + 0 ID=Phyra93722;Parent=Phyra93722;rank=6 scaffold_5 . exon 112700 112746 . + . ID=Phyra93722.6;Parent=Phyra93722;constitutive=1;ensembl_phase=1;rank=6 scaffold_5 . CDS 112942 112953 . + 0 ID=Phyra93722;Parent=Phyra93722;rank=7 scaffold_5 . exon 112942 112953 . + . ID=Phyra93722.7;Parent=Phyra93722;constitutive=1;rank=7 scaffold_5 . CDS 113115 113394 . + 0 ID=Phyra93722;Parent=Phyra93722;rank=8 scaffold_5 . exon 113115 113394 . + . ID=Phyra93722.8;Parent=Phyra93722;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_5 . CDS 113436 113443 . + 0 ID=Phyra93722;Parent=Phyra93722;rank=9 scaffold_5 . exon 113436 113443 . + . ID=Phyra93722.9;Parent=Phyra93722;constitutive=1;ensembl_phase=1;rank=9 scaffold_5 . exon 119703 120336 . + . ID=Phyra50021.5;Parent=Phyra50021;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_5 . exon 120376 121133 . + . ID=Phyra50021.6;Parent=Phyra50021;constitutive=1;ensembl_phase=1;rank=6 scaffold_5 ensembl protein_coding_gene 124137 125931 . - . ID=Phyra71137;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000006;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 124137 125931 . - . ID=Phyra71137;Parent=Phyra71137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 124137 124490 . - 0 ID=Phyra71137;Parent=Phyra71137;rank=8 scaffold_5 . exon 124137 124490 . - . ID=Phyra71137.8;Parent=Phyra71137;constitutive=1;rank=8 scaffold_5 . CDS 124552 124641 . - 0 ID=Phyra71137;Parent=Phyra71137;rank=7 scaffold_5 . exon 124552 124641 . - . ID=Phyra71137.7;Parent=Phyra71137;constitutive=1;rank=7 scaffold_5 . CDS 124707 124841 . - 0 ID=Phyra71137;Parent=Phyra71137;rank=6 scaffold_5 . exon 124707 124841 . - . ID=Phyra71137.6;Parent=Phyra71137;constitutive=1;rank=6 scaffold_5 . CDS 124906 125094 . - 0 ID=Phyra71137;Parent=Phyra71137;rank=5 scaffold_5 . exon 124906 125094 . - . ID=Phyra71137.5;Parent=Phyra71137;constitutive=1;rank=5 scaffold_5 . CDS 125169 125248 . - 0 ID=Phyra71137;Parent=Phyra71137;rank=4 scaffold_5 . exon 125169 125248 . - . ID=Phyra71137.4;Parent=Phyra71137;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 125316 125605 . - 0 ID=Phyra71137;Parent=Phyra71137;rank=3 scaffold_5 . exon 125316 125605 . - . ID=Phyra71137.3;Parent=Phyra71137;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 125680 125753 . - 0 ID=Phyra71137;Parent=Phyra71137;rank=2 scaffold_5 . exon 125680 125753 . - . ID=Phyra71137.2;Parent=Phyra71137;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 125821 125931 . - 0 ID=Phyra71137;Parent=Phyra71137;rank=1 scaffold_5 . exon 125821 125931 . - . ID=Phyra71137.1;Parent=Phyra71137;constitutive=1;rank=1 scaffold_5 . biological_region 133223 133227 0.999 - . logic_name=eponine scaffold_5 . biological_region 133611 133612 0.999 + . logic_name=eponine scaffold_5 . biological_region 133930 133933 0.999 - . logic_name=eponine scaffold_5 . repeat_region 135692 135700 . ? . description=dust scaffold_5 . biological_region 136273 136275 0.999 - . logic_name=eponine scaffold_5 . biological_region 137343 137351 0.999 - . logic_name=eponine scaffold_5 . biological_region 137391 137395 0.999 - . logic_name=eponine scaffold_5 . biological_region 137426 137429 0.999 + . logic_name=eponine scaffold_5 . biological_region 137438 137443 0.999 - . logic_name=eponine scaffold_5 . biological_region 138101 138105 0.999 - . logic_name=eponine scaffold_5 . biological_region 139065 139069 0.999 - . logic_name=eponine scaffold_5 . biological_region 139301 139306 0.999 + . logic_name=eponine scaffold_5 . biological_region 139450 139452 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 131466 134094 . - . ID=Phyra73826;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000033;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 131466 134094 . - . ID=Phyra73826;Parent=Phyra73826;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 131466 131470 . - 0 ID=Phyra73826;Parent=Phyra73826;rank=2 scaffold_5 . exon 131466 131470 . - . ID=Phyra73826.2;Parent=Phyra73826;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 131940 134094 . - 0 ID=Phyra73826;Parent=Phyra73826;rank=1 scaffold_5 . exon 131940 134094 . - . ID=Phyra73826.1;Parent=Phyra73826;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 136575 137636 . + . ID=Phyra73827;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000034;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 136575 137636 . + . ID=Phyra73827;Parent=Phyra73827;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 136575 137636 . + 0 ID=Phyra73827;Parent=Phyra73827;rank=1 scaffold_5 . exon 136575 137636 . + . ID=Phyra73827.1;Parent=Phyra73827;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 138839 141064 . + . ID=Phyra73828;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000035;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 138839 141064 . + . ID=Phyra73828;Parent=Phyra73828;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 138839 141064 . + 0 ID=Phyra73828;Parent=Phyra73828;rank=1 scaffold_5 . exon 138839 141064 . + . ID=Phyra73828.1;Parent=Phyra73828;constitutive=1;rank=1 scaffold_5 . repeat_region 148218 148282 . ? . description=trf scaffold_5 ensembl protein_coding_gene 146543 147022 . - . ID=Phyra71138;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000007;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 146543 147022 . - . ID=Phyra71138;Parent=Phyra71138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 146543 147022 . - 0 ID=Phyra71138;Parent=Phyra71138;rank=1 scaffold_5 . exon 146543 147022 . - . ID=Phyra71138.1;Parent=Phyra71138;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 141187 142646 . - . ID=Phyra73829;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000036;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 141187 142646 . - . ID=Phyra73829;Parent=Phyra73829;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 141187 141849 . - 0 ID=Phyra73829;Parent=Phyra73829;rank=4 scaffold_5 . exon 141187 141849 . - . ID=Phyra73829.4;Parent=Phyra73829;constitutive=1;rank=4 scaffold_5 . CDS 141954 142157 . - 0 ID=Phyra73829;Parent=Phyra73829;rank=3 scaffold_5 . exon 141954 142157 . - . ID=Phyra73829.3;Parent=Phyra73829;constitutive=1;rank=3 scaffold_5 . CDS 142227 142331 . - 0 ID=Phyra73829;Parent=Phyra73829;rank=2 scaffold_5 . exon 142227 142331 . - . ID=Phyra73829.2;Parent=Phyra73829;constitutive=1;rank=2 scaffold_5 . CDS 142410 142646 . - 0 ID=Phyra73829;Parent=Phyra73829;rank=1 scaffold_5 . exon 142410 142646 . - . ID=Phyra73829.1;Parent=Phyra73829;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 143179 145128 . + . ID=Phyra73830;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000037;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 143179 145128 . + . ID=Phyra73830;Parent=Phyra73830;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 143179 143210 . + 0 ID=Phyra73830;Parent=Phyra73830;rank=1 scaffold_5 . exon 143179 143210 . + . ID=Phyra73830.1;Parent=Phyra73830;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 143237 143391 . + 0 ID=Phyra73830;Parent=Phyra73830;rank=2 scaffold_5 . exon 143237 143391 . + . ID=Phyra73830.2;Parent=Phyra73830;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 143473 143705 . + 0 ID=Phyra73830;Parent=Phyra73830;rank=3 scaffold_5 . exon 143473 143705 . + . ID=Phyra73830.3;Parent=Phyra73830;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 143804 144086 . + 0 ID=Phyra73830;Parent=Phyra73830;rank=4 scaffold_5 . exon 143804 144086 . + . ID=Phyra73830.4;Parent=Phyra73830;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 144478 144796 . + 0 ID=Phyra73830;Parent=Phyra73830;rank=5 scaffold_5 . exon 144478 144796 . + . ID=Phyra73830.5;Parent=Phyra73830;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_5 . CDS 144873 145128 . + 0 ID=Phyra73830;Parent=Phyra73830;rank=6 scaffold_5 . exon 144873 145128 . + . ID=Phyra73830.6;Parent=Phyra73830;constitutive=1;ensembl_phase=2;rank=6 scaffold_5 ensembl protein_coding_gene 145574 146080 . - . ID=Phyra73831;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000038;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 145574 146080 . - . ID=Phyra73831;Parent=Phyra73831;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 145574 146080 . - 0 ID=Phyra73831;Parent=Phyra73831;rank=1 scaffold_5 . exon 145574 146080 . - . ID=Phyra73831.1;Parent=Phyra73831;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 147224 148666 . + . ID=Phyra73833;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000040;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 147224 148666 . + . ID=Phyra73833;Parent=Phyra73833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 147224 148666 . + 0 ID=Phyra73833;Parent=Phyra73833;rank=1 scaffold_5 . exon 147224 148666 . + . ID=Phyra73833.1;Parent=Phyra73833;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 148733 150867 . - . ID=Phyra73834;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000041;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 148733 150867 . - . ID=Phyra73834;Parent=Phyra73834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 148733 149311 . - 0 ID=Phyra73834;Parent=Phyra73834;rank=7 scaffold_5 . exon 148733 149311 . - . ID=Phyra73834.7;Parent=Phyra73834;constitutive=1;rank=7 scaffold_5 . CDS 149391 149621 . - 0 ID=Phyra73834;Parent=Phyra73834;rank=6 scaffold_5 . exon 149391 149621 . - . ID=Phyra73834.6;Parent=Phyra73834;constitutive=1;rank=6 scaffold_5 . CDS 149705 149869 . - 0 ID=Phyra73834;Parent=Phyra73834;rank=5 scaffold_5 . CDS 149990 150068 . - 0 ID=Phyra73834;Parent=Phyra73834;rank=4 scaffold_5 . CDS 150167 150386 . - 0 ID=Phyra73834;Parent=Phyra73834;rank=3 scaffold_5 . CDS 150453 150504 . - 0 ID=Phyra73834;Parent=Phyra73834;rank=2 scaffold_5 . CDS 150568 150867 . - 0 ID=Phyra73834;Parent=Phyra73834;rank=1 scaffold_5 . biological_region 151860 151861 0.999 - . logic_name=eponine scaffold_5 . biological_region 157268 157268 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 155226 157008 . - . ID=Phyra50037;biotype=protein_coding;external_name=gwEuk.5.257.1;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 155226 157008 . - . ID=Phyra50037;Parent=Phyra50037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 155226 155557 . - 0 ID=Phyra50037;Parent=Phyra50037;rank=2 scaffold_5 . exon 155226 155557 . - . ID=Phyra50037.2;Parent=Phyra50037;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 155643 157008 . - 0 ID=Phyra50037;Parent=Phyra50037;rank=1 scaffold_5 . exon 155643 157008 . - . ID=Phyra50037.1;Parent=Phyra50037;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . exon 149705 149869 . - . ID=Phyra73834.5;Parent=Phyra73834;constitutive=1;rank=5 scaffold_5 . exon 149990 150068 . - . ID=Phyra73834.4;Parent=Phyra73834;constitutive=1;ensembl_phase=2;rank=4 scaffold_5 . exon 150167 150386 . - . ID=Phyra73834.3;Parent=Phyra73834;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_5 . exon 150453 150504 . - . ID=Phyra73834.2;Parent=Phyra73834;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . exon 150568 150867 . - . ID=Phyra73834.1;Parent=Phyra73834;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 152444 155044 . + . ID=Phyra73835;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000042;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 152444 155044 . + . ID=Phyra73835;Parent=Phyra73835;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 152444 155044 . + 0 ID=Phyra73835;Parent=Phyra73835;rank=1 scaffold_5 . exon 152444 155044 . + . ID=Phyra73835.1;Parent=Phyra73835;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 158702 160247 . - . ID=Phyra73837;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000044;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 158702 160247 . - . ID=Phyra73837;Parent=Phyra73837;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 158702 158878 . - 0 ID=Phyra73837;Parent=Phyra73837;rank=5 scaffold_5 . exon 158702 158878 . - . ID=Phyra73837.5;Parent=Phyra73837;constitutive=1;rank=5 scaffold_5 . CDS 158970 159127 . - 0 ID=Phyra73837;Parent=Phyra73837;rank=4 scaffold_5 . exon 158970 159127 . - . ID=Phyra73837.4;Parent=Phyra73837;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 159197 159266 . - 0 ID=Phyra73837;Parent=Phyra73837;rank=3 scaffold_5 . exon 159197 159266 . - . ID=Phyra73837.3;Parent=Phyra73837;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 159331 160104 . - 0 ID=Phyra73837;Parent=Phyra73837;rank=2 scaffold_5 . exon 159331 160104 . - . ID=Phyra73837.2;Parent=Phyra73837;constitutive=1;rank=2 scaffold_5 . CDS 160203 160247 . - 0 ID=Phyra73837;Parent=Phyra73837;rank=1 scaffold_5 ensembl protein_coding_gene 160456 161690 . + . ID=Phyra71140;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000009;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 160456 161690 . + . ID=Phyra71140;Parent=Phyra71140;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 160456 160594 . + 0 ID=Phyra71140;Parent=Phyra71140;rank=1 scaffold_5 . exon 160456 160594 . + . ID=Phyra71140.1;Parent=Phyra71140;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 161147 161316 . + 0 ID=Phyra71140;Parent=Phyra71140;rank=2 scaffold_5 . exon 161147 161316 . + . ID=Phyra71140.2;Parent=Phyra71140;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 161388 161690 . + 0 ID=Phyra71140;Parent=Phyra71140;rank=3 scaffold_5 . exon 161388 161690 . + . ID=Phyra71140.3;Parent=Phyra71140;constitutive=1;rank=3 scaffold_5 . exon 160203 160247 . - . ID=Phyra73837.1;Parent=Phyra73837;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 161961 164854 . - . ID=Phyra73839;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000046;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 161961 164854 . - . ID=Phyra73839;Parent=Phyra73839;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 161961 162440 . - 0 ID=Phyra73839;Parent=Phyra73839;rank=2 scaffold_5 . exon 161961 162440 . - . ID=Phyra73839.2;Parent=Phyra73839;constitutive=1;rank=2 scaffold_5 . CDS 162527 164854 . - 0 ID=Phyra73839;Parent=Phyra73839;rank=1 scaffold_5 . exon 162527 164854 . - . ID=Phyra73839.1;Parent=Phyra73839;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 165230 168405 . + . ID=Phyra73840;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000047;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 165230 168405 . + . ID=Phyra73840;Parent=Phyra73840;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 165230 165310 . + 0 ID=Phyra73840;Parent=Phyra73840;rank=1 scaffold_5 . exon 165230 165310 . + . ID=Phyra73840.1;Parent=Phyra73840;constitutive=1;rank=1 scaffold_5 . CDS 165394 165537 . + 0 ID=Phyra73840;Parent=Phyra73840;rank=2 scaffold_5 . exon 165394 165537 . + . ID=Phyra73840.2;Parent=Phyra73840;constitutive=1;rank=2 scaffold_5 . CDS 165640 165911 . + 0 ID=Phyra73840;Parent=Phyra73840;rank=3 scaffold_5 . exon 165640 165911 . + . ID=Phyra73840.3;Parent=Phyra73840;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_5 . CDS 166060 166219 . + 0 ID=Phyra73840;Parent=Phyra73840;rank=4 scaffold_5 . exon 166060 166219 . + . ID=Phyra73840.4;Parent=Phyra73840;constitutive=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 166359 166546 . + 0 ID=Phyra73840;Parent=Phyra73840;rank=5 scaffold_5 . exon 166359 166546 . + . ID=Phyra73840.5;Parent=Phyra73840;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_5 . CDS 166607 166801 . + 0 ID=Phyra73840;Parent=Phyra73840;rank=6 scaffold_5 . exon 166607 166801 . + . ID=Phyra73840.6;Parent=Phyra73840;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_5 . CDS 166890 167466 . + 0 ID=Phyra73840;Parent=Phyra73840;rank=7 scaffold_5 . exon 166890 167466 . + . ID=Phyra73840.7;Parent=Phyra73840;constitutive=1;ensembl_phase=2;rank=7 scaffold_5 . CDS 167546 167872 . + 0 ID=Phyra73840;Parent=Phyra73840;rank=8 scaffold_5 . exon 167546 167872 . + . ID=Phyra73840.8;Parent=Phyra73840;constitutive=1;rank=8 scaffold_5 . CDS 167940 168130 . + 0 ID=Phyra73840;Parent=Phyra73840;rank=9 scaffold_5 . exon 167940 168130 . + . ID=Phyra73840.9;Parent=Phyra73840;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_5 . CDS 168198 168405 . + 0 ID=Phyra73840;Parent=Phyra73840;rank=10 scaffold_5 . exon 168198 168405 . + . ID=Phyra73840.10;Parent=Phyra73840;constitutive=1;ensembl_phase=2;rank=10 scaffold_5 . repeat_region 169734 170406 . + . description=GypsyPi-1c_I-int scaffold_5 . repeat_region 171831 173048 . ? . description=trf scaffold_5 . repeat_region 173148 173155 . ? . description=dust scaffold_5 . repeat_region 173633 173640 . ? . description=dust scaffold_5 . repeat_region 174898 174957 . ? . description=dust scaffold_5 . repeat_region 175417 175473 . ? . description=dust scaffold_5 . repeat_region 176964 176971 . ? . description=dust scaffold_5 . repeat_region 177448 177455 . ? . description=dust scaffold_5 . repeat_region 178169 178176 . ? . description=dust scaffold_5 . repeat_region 178681 178707 . ? . description=trf scaffold_5 . repeat_region 179446 179458 . ? . description=dust scaffold_5 ensembl tRNA_gene 176391 176463 . - . ID=EPrPRAG00000000051;biotype=tRNA;description=tRNA-Arg for anticodon CCU [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_5 ensembl transcript 176391 176463 . - . ID=EPrPRAT00000000051;Parent=EPrPRAG00000000051;biotype=tRNA;logic_name=ncrna_eg scaffold_5 ensembl tRNA_gene 174141 174213 . + . ID=EPrPRAG00000000090;biotype=tRNA;description=tRNA-Arg for anticodon CCU [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_5 ensembl transcript 174141 174213 . + . ID=EPrPRAT00000000090;Parent=EPrPRAG00000000090;biotype=tRNA;logic_name=ncrna_eg scaffold_5 ensembl tRNA_gene 172454 172525 . - . ID=EPrPRAG00000000124;biotype=tRNA;description=tRNA-Pro for anticodon CGG [Source:TRNASCAN_SE%3BAcc:tRNA-Pro];external_name=tRNA-Pro;logic_name=ncrna_eg scaffold_5 ensembl transcript 172454 172525 . - . ID=EPrPRAT00000000124;Parent=EPrPRAG00000000124;biotype=tRNA;logic_name=ncrna_eg scaffold_5 ensembl tRNA_gene 179287 179359 . - . ID=EPrPRAG00000000141;biotype=tRNA;description=tRNA-Arg for anticodon CCU [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_5 ensembl transcript 179287 179359 . - . ID=EPrPRAT00000000141;Parent=EPrPRAG00000000141;biotype=tRNA;logic_name=ncrna_eg scaffold_5 ensembl tRNA_gene 172071 172142 . - . ID=EPrPRAG00000000185;biotype=tRNA;description=tRNA-Pro for anticodon CGG [Source:TRNASCAN_SE%3BAcc:tRNA-Pro];external_name=tRNA-Pro;logic_name=ncrna_eg scaffold_5 ensembl transcript 172071 172142 . - . ID=EPrPRAT00000000185;Parent=EPrPRAG00000000185;biotype=tRNA;logic_name=ncrna_eg scaffold_5 ensembl tRNA_gene 172837 172908 . - . ID=EPrPRAG00000000193;biotype=tRNA;description=tRNA-Pro for anticodon CGG [Source:TRNASCAN_SE%3BAcc:tRNA-Pro];external_name=tRNA-Pro;logic_name=ncrna_eg scaffold_5 ensembl transcript 172837 172908 . - . ID=EPrPRAT00000000193;Parent=EPrPRAG00000000193;biotype=tRNA;logic_name=ncrna_eg scaffold_5 . exon 176391 176463 . - . ID=EPrPRAE00000000051;Parent=EPrPRAT00000000051;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . exon 174141 174213 . + . ID=EPrPRAE00000000090;Parent=EPrPRAT00000000090;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . exon 172454 172525 . - . ID=EPrPRAE00000000124;Parent=EPrPRAT00000000124;constitutive=1;rank=1 scaffold_5 . exon 179287 179359 . - . ID=EPrPRAE00000000141;Parent=EPrPRAT00000000141;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . exon 172071 172142 . - . ID=EPrPRAE00000000185;Parent=EPrPRAT00000000185;constitutive=1;rank=1 scaffold_5 . exon 172837 172908 . - . ID=EPrPRAE00000000193;Parent=EPrPRAT00000000193;constitutive=1;rank=1 scaffold_5 . biological_region 187560 187564 0.999 + . logic_name=eponine scaffold_5 . biological_region 188536 188539 0.999 - . logic_name=eponine scaffold_5 . repeat_region 191804 191811 . ? . description=dust scaffold_5 . repeat_region 193043 193158 . ? . description=trf scaffold_5 . repeat_region 193361 193369 . ? . description=dust scaffold_5 . repeat_region 194052 194472 . ? . description=dust scaffold_5 . repeat_region 195290 195297 . ? . description=dust scaffold_5 . repeat_region 196011 196018 . ? . description=dust scaffold_5 . repeat_region 196061 196070 . ? . description=dust scaffold_5 . repeat_region 196112 196203 . ? . description=dust scaffold_5 . repeat_region 198816 198865 . ? . description=dust scaffold_5 ensembl protein_coding_gene 197556 197901 . - . ID=Phyra49781;biotype=protein_coding;external_name=gwEuk.5.1.1;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 197556 197901 . - . ID=Phyra49781;Parent=Phyra49781;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 197556 197729 . - 0 ID=Phyra49781;Parent=Phyra49781;rank=2 scaffold_5 . exon 197556 197729 . - . ID=Phyra49781.2;Parent=Phyra49781;constitutive=1;rank=2 scaffold_5 . CDS 197797 197901 . - 0 ID=Phyra49781;Parent=Phyra49781;rank=1 scaffold_5 . exon 197797 197901 . - . ID=Phyra49781.1;Parent=Phyra49781;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 194879 195211 . - . ID=Phyra50048;biotype=protein_coding;external_name=gwEuk.5.268.1;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 194879 195211 . - . ID=Phyra50048;Parent=Phyra50048;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 194879 195211 . - 0 ID=Phyra50048;Parent=Phyra50048;rank=1 scaffold_5 . exon 194879 195211 . - . ID=Phyra50048.1;Parent=Phyra50048;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 190270 193298 . - . ID=Phyra73841;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000048;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 190270 193298 . - . ID=Phyra73841;Parent=Phyra73841;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 190270 190504 . - 0 ID=Phyra73841;Parent=Phyra73841;rank=9 scaffold_5 . exon 190270 190504 . - . ID=Phyra73841.9;Parent=Phyra73841;constitutive=1;ensembl_phase=2;rank=9 scaffold_5 . CDS 190566 190810 . - 0 ID=Phyra73841;Parent=Phyra73841;rank=8 scaffold_5 . exon 190566 190810 . - . ID=Phyra73841.8;Parent=Phyra73841;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_5 . CDS 190892 191219 . - 0 ID=Phyra73841;Parent=Phyra73841;rank=7 scaffold_5 . exon 190892 191219 . - . ID=Phyra73841.7;Parent=Phyra73841;constitutive=1;ensembl_phase=2;rank=7 scaffold_5 . CDS 191283 191539 . - 0 ID=Phyra73841;Parent=Phyra73841;rank=6 scaffold_5 . exon 191283 191539 . - . ID=Phyra73841.6;Parent=Phyra73841;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_5 . CDS 191663 191705 . - 0 ID=Phyra73841;Parent=Phyra73841;rank=5 scaffold_5 . exon 191663 191705 . - . ID=Phyra73841.5;Parent=Phyra73841;constitutive=1;ensembl_phase=2;rank=5 scaffold_5 . CDS 191855 191983 . - 0 ID=Phyra73841;Parent=Phyra73841;rank=4 scaffold_5 . exon 191855 191983 . - . ID=Phyra73841.4;Parent=Phyra73841;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_5 . CDS 192003 192084 . - 0 ID=Phyra73841;Parent=Phyra73841;rank=3 scaffold_5 . exon 192003 192084 . - . ID=Phyra73841.3;Parent=Phyra73841;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_5 . CDS 192207 192369 . - 0 ID=Phyra73841;Parent=Phyra73841;rank=2 scaffold_5 . exon 192207 192369 . - . ID=Phyra73841.2;Parent=Phyra73841;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 192726 193298 . - 0 ID=Phyra73841;Parent=Phyra73841;rank=1 scaffold_5 . exon 192726 193298 . - . ID=Phyra73841.1;Parent=Phyra73841;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 196267 197247 . + . ID=Phyra73843;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000050;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 196267 197247 . + . ID=Phyra73843;Parent=Phyra73843;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 196267 197247 . + 0 ID=Phyra73843;Parent=Phyra73843;rank=1 scaffold_5 . exon 196267 197247 . + . ID=Phyra73843.1;Parent=Phyra73843;constitutive=1;rank=1 scaffold_5 . biological_region 200540 200551 0.999 - . logic_name=eponine scaffold_5 . biological_region 201304 201310 0.999 + . logic_name=eponine scaffold_5 . biological_region 201623 201626 0.999 - . logic_name=eponine scaffold_5 . biological_region 201814 201814 0.999 - . logic_name=eponine scaffold_5 . biological_region 204230 204237 0.999 - . logic_name=eponine scaffold_5 . biological_region 204241 204245 0.999 + . logic_name=eponine scaffold_5 . biological_region 204259 204261 0.999 - . logic_name=eponine scaffold_5 . biological_region 204287 204292 0.999 + . logic_name=eponine scaffold_5 . biological_region 204299 204304 0.999 - . logic_name=eponine scaffold_5 . biological_region 206296 206301 0.999 + . logic_name=eponine scaffold_5 . biological_region 206308 206313 0.999 - . logic_name=eponine scaffold_5 . biological_region 206339 206341 0.999 + . logic_name=eponine scaffold_5 . biological_region 206355 206359 0.999 - . logic_name=eponine scaffold_5 . biological_region 206363 206370 0.999 + . logic_name=eponine scaffold_5 . biological_region 206598 206600 0.999 + . logic_name=eponine scaffold_5 . biological_region 207266 207268 0.999 - . logic_name=eponine scaffold_5 . biological_region 208151 208154 0.999 - . logic_name=eponine scaffold_5 . biological_region 208237 208239 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 199516 200622 . - . ID=Phyra73844;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000051;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 199516 200622 . - . ID=Phyra73844;Parent=Phyra73844;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 199516 200622 . - 0 ID=Phyra73844;Parent=Phyra73844;rank=1 scaffold_5 . exon 199516 200622 . - . ID=Phyra73844.1;Parent=Phyra73844;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 201343 202227 . + . ID=Phyra73845;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000052;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 201343 202227 . + . ID=Phyra73845;Parent=Phyra73845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 201343 202227 . + 0 ID=Phyra73845;Parent=Phyra73845;rank=1 scaffold_5 . exon 201343 202227 . + . ID=Phyra73845.1;Parent=Phyra73845;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 202423 203766 . - . ID=Phyra73846;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000053;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 202423 203766 . - . ID=Phyra73846;Parent=Phyra73846;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 202423 202470 . - 0 ID=Phyra73846;Parent=Phyra73846;rank=4 scaffold_5 . exon 202423 202470 . - . ID=Phyra73846.4;Parent=Phyra73846;constitutive=1;rank=4 scaffold_5 . CDS 202600 202661 . - 0 ID=Phyra73846;Parent=Phyra73846;rank=3 scaffold_5 . exon 202600 202661 . - . ID=Phyra73846.3;Parent=Phyra73846;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 202735 203519 . - 0 ID=Phyra73846;Parent=Phyra73846;rank=2 scaffold_5 . exon 202735 203519 . - . ID=Phyra73846.2;Parent=Phyra73846;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 203582 203766 . - 0 ID=Phyra73846;Parent=Phyra73846;rank=1 scaffold_5 . exon 203582 203766 . - . ID=Phyra73846.1;Parent=Phyra73846;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 206969 208514 . + . ID=Phyra73847;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000054;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 206969 208514 . + . ID=Phyra73847;Parent=Phyra73847;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 206969 207023 . + 0 ID=Phyra73847;Parent=Phyra73847;rank=1 scaffold_5 . exon 206969 207023 . + . ID=Phyra73847.1;Parent=Phyra73847;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 207429 207492 . + 0 ID=Phyra73847;Parent=Phyra73847;rank=2 scaffold_5 . exon 207429 207492 . + . ID=Phyra73847.2;Parent=Phyra73847;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_5 . CDS 207563 208514 . + 0 ID=Phyra73847;Parent=Phyra73847;rank=3 scaffold_5 . exon 207563 208514 . + . ID=Phyra73847.3;Parent=Phyra73847;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 ensembl protein_coding_gene 209088 211502 . - . ID=Phyra73848;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000055;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 209088 211502 . - . ID=Phyra73848;Parent=Phyra73848;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 209088 209234 . - 0 ID=Phyra73848;Parent=Phyra73848;rank=8 scaffold_5 . exon 209088 209234 . - . ID=Phyra73848.8;Parent=Phyra73848;constitutive=1;rank=8 scaffold_5 . CDS 209332 209427 . - 0 ID=Phyra73848;Parent=Phyra73848;rank=7 scaffold_5 . exon 209332 209427 . - . ID=Phyra73848.7;Parent=Phyra73848;constitutive=1;rank=7 scaffold_5 . CDS 209500 209581 . - 0 ID=Phyra73848;Parent=Phyra73848;rank=6 scaffold_5 . CDS 209664 209963 . - 0 ID=Phyra73848;Parent=Phyra73848;rank=5 scaffold_5 . CDS 210009 210075 . - 0 ID=Phyra73848;Parent=Phyra73848;rank=4 scaffold_5 . CDS 210118 210364 . - 0 ID=Phyra73848;Parent=Phyra73848;rank=3 scaffold_5 . CDS 210743 211277 . - 0 ID=Phyra73848;Parent=Phyra73848;rank=2 scaffold_5 . CDS 211348 211502 . - 0 ID=Phyra73848;Parent=Phyra73848;rank=1 scaffold_5 . repeat_region 213961 213995 . ? . description=trf scaffold_5 ensembl protein_coding_gene 214640 215260 . + . ID=Phyra49782;biotype=protein_coding;external_name=gwEuk.5.2.1;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 214640 215260 . + . ID=Phyra49782;Parent=Phyra49782;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 214640 215260 . + 0 ID=Phyra49782;Parent=Phyra49782;rank=1 scaffold_5 . exon 214640 215260 . + . ID=Phyra49782.1;Parent=Phyra49782;constitutive=1;rank=1 scaffold_5 . exon 209500 209581 . - . ID=Phyra73848.6;Parent=Phyra73848;constitutive=1;ensembl_phase=2;rank=6 scaffold_5 . exon 209664 209963 . - . ID=Phyra73848.5;Parent=Phyra73848;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_5 . exon 210009 210075 . - . ID=Phyra73848.4;Parent=Phyra73848;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_5 . exon 210118 210364 . - . ID=Phyra73848.3;Parent=Phyra73848;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . exon 210743 211277 . - . ID=Phyra73848.2;Parent=Phyra73848;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . exon 211348 211502 . - . ID=Phyra73848.1;Parent=Phyra73848;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 212036 213041 . - . ID=Phyra73849;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000056;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 212036 213041 . - . ID=Phyra73849;Parent=Phyra73849;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 212036 212179 . - 0 ID=Phyra73849;Parent=Phyra73849;rank=2 scaffold_5 . exon 212036 212179 . - . ID=Phyra73849.2;Parent=Phyra73849;constitutive=1;rank=2 scaffold_5 . CDS 212241 213041 . - 0 ID=Phyra73849;Parent=Phyra73849;rank=1 scaffold_5 . exon 212241 213041 . - . ID=Phyra73849.1;Parent=Phyra73849;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 213292 214046 . + . ID=Phyra73850;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000057;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 213292 214046 . + . ID=Phyra73850;Parent=Phyra73850;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 213292 213445 . + 0 ID=Phyra73850;Parent=Phyra73850;rank=1 scaffold_5 . exon 213292 213445 . + . ID=Phyra73850.1;Parent=Phyra73850;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 213517 213570 . + 0 ID=Phyra73850;Parent=Phyra73850;rank=2 scaffold_5 . exon 213517 213570 . + . ID=Phyra73850.2;Parent=Phyra73850;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 213644 213822 . + 0 ID=Phyra73850;Parent=Phyra73850;rank=3 scaffold_5 . exon 213644 213822 . + . ID=Phyra73850.3;Parent=Phyra73850;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 213891 214046 . + 0 ID=Phyra73850;Parent=Phyra73850;rank=4 scaffold_5 . exon 213891 214046 . + . ID=Phyra73850.4;Parent=Phyra73850;constitutive=1;rank=4 scaffold_5 ensembl protein_coding_gene 215563 224126 . + . ID=Phyra73852;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000059;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 215563 224126 . + . ID=Phyra73852;Parent=Phyra73852;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 215563 215614 . + 0 ID=Phyra73852;Parent=Phyra73852;rank=1 scaffold_5 . exon 215563 215614 . + . ID=Phyra73852.1;Parent=Phyra73852;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 215694 224062 . + 0 ID=Phyra73852;Parent=Phyra73852;rank=2 scaffold_5 . exon 215694 224062 . + . ID=Phyra73852.2;Parent=Phyra73852;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 224094 224126 . + 0 ID=Phyra73852;Parent=Phyra73852;rank=3 scaffold_5 . biological_region 221620 221620 0.999 + . logic_name=eponine scaffold_5 . repeat_region 224127 224176 . ? . description=dust scaffold_5 . repeat_region 225728 225735 . ? . description=dust scaffold_5 . repeat_region 225810 225817 . ? . description=dust scaffold_5 . repeat_region 225857 225865 . ? . description=dust scaffold_5 . biological_region 225923 225926 0.999 + . logic_name=eponine scaffold_5 . biological_region 225932 225934 0.999 + . logic_name=eponine scaffold_5 . biological_region 226018 226029 0.999 + . logic_name=eponine scaffold_5 . biological_region 226919 226924 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 228692 229037 . + . ID=Phyra49787;biotype=protein_coding;external_name=gwEuk.5.7.1;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 228692 229037 . + . ID=Phyra49787;Parent=Phyra49787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 228692 228796 . + 0 ID=Phyra49787;Parent=Phyra49787;rank=1 scaffold_5 . exon 228692 228796 . + . ID=Phyra49787.1;Parent=Phyra49787;constitutive=1;rank=1 scaffold_5 . CDS 228864 229037 . + 0 ID=Phyra49787;Parent=Phyra49787;rank=2 scaffold_5 . exon 228864 229037 . + . ID=Phyra49787.2;Parent=Phyra49787;constitutive=1;rank=2 scaffold_5 . exon 224094 224126 . + . ID=Phyra73852.3;Parent=Phyra73852;constitutive=1;rank=3 scaffold_5 ensembl protein_coding_gene 225946 227046 . + . ID=Phyra73853;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000060;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 225946 227046 . + . ID=Phyra73853;Parent=Phyra73853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 225946 227046 . + 0 ID=Phyra73853;Parent=Phyra73853;rank=1 scaffold_5 . exon 225946 227046 . + . ID=Phyra73853.1;Parent=Phyra73853;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 229346 230452 . - . ID=Phyra73854;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000061;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 229346 230452 . - . ID=Phyra73854;Parent=Phyra73854;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 229346 230452 . - 0 ID=Phyra73854;Parent=Phyra73854;rank=1 scaffold_5 . exon 229346 230452 . - . ID=Phyra73854.1;Parent=Phyra73854;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 231173 253112 . + . ID=Phyra73855;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000062;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 231173 253112 . + . ID=Phyra73855;Parent=Phyra73855;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 231173 231861 . + 0 ID=Phyra73855;Parent=Phyra73855;rank=1 scaffold_5 . exon 231173 231861 . + . ID=Phyra73855.1;Parent=Phyra73855;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 249216 250227 . + 0 ID=Phyra73855;Parent=Phyra73855;rank=2 scaffold_5 . CDS 250276 250389 . + 0 ID=Phyra73855;Parent=Phyra73855;rank=3 scaffold_5 . CDS 250442 250509 . + 0 ID=Phyra73855;Parent=Phyra73855;rank=4 scaffold_5 . CDS 250533 252526 . + 0 ID=Phyra73855;Parent=Phyra73855;rank=5 scaffold_5 . CDS 252601 253112 . + 0 ID=Phyra73855;Parent=Phyra73855;rank=6 scaffold_5 . repeat_region 231868 249007 . ? . description=dust scaffold_5 . biological_region 249093 249093 0.999 + . logic_name=eponine scaffold_5 . exon 249216 250227 . + . ID=Phyra73855.2;Parent=Phyra73855;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 ensembl protein_coding_gene 253300 254438 . - . ID=Phyra71143;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000012;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 253300 254438 . - . ID=Phyra71143;Parent=Phyra71143;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 253300 253440 . - 0 ID=Phyra71143;Parent=Phyra71143;rank=6 scaffold_5 . exon 253300 253440 . - . ID=Phyra71143.6;Parent=Phyra71143;constitutive=1;rank=6 scaffold_5 . CDS 253508 253652 . - 0 ID=Phyra71143;Parent=Phyra71143;rank=5 scaffold_5 . exon 253508 253652 . - . ID=Phyra71143.5;Parent=Phyra71143;constitutive=1;ensembl_phase=2;rank=5 scaffold_5 . CDS 253728 253983 . - 0 ID=Phyra71143;Parent=Phyra71143;rank=4 scaffold_5 . exon 253728 253983 . - . ID=Phyra71143.4;Parent=Phyra71143;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_5 . CDS 254063 254109 . - 0 ID=Phyra71143;Parent=Phyra71143;rank=3 scaffold_5 . exon 254063 254109 . - . ID=Phyra71143.3;Parent=Phyra71143;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 254184 254240 . - 0 ID=Phyra71143;Parent=Phyra71143;rank=2 scaffold_5 . exon 254184 254240 . - . ID=Phyra71143.2;Parent=Phyra71143;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . CDS 254317 254438 . - 0 ID=Phyra71143;Parent=Phyra71143;rank=1 scaffold_5 . exon 254317 254438 . - . ID=Phyra71143.1;Parent=Phyra71143;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 231173 253112 . + . ID=Phyra73855;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000062;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 231173 253112 . + . ID=Phyra73855;Parent=Phyra73855;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 231173 231861 . + 0 ID=Phyra73855;Parent=Phyra73855;rank=1 scaffold_5 . CDS 249216 250227 . + 0 ID=Phyra73855;Parent=Phyra73855;rank=2 scaffold_5 . CDS 250276 250389 . + 0 ID=Phyra73855;Parent=Phyra73855;rank=3 scaffold_5 . exon 250276 250389 . + . ID=Phyra73855.3;Parent=Phyra73855;constitutive=1;rank=3 scaffold_5 . CDS 250442 250509 . + 0 ID=Phyra73855;Parent=Phyra73855;rank=4 scaffold_5 . exon 250442 250509 . + . ID=Phyra73855.4;Parent=Phyra73855;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_5 . CDS 250533 252526 . + 0 ID=Phyra73855;Parent=Phyra73855;rank=5 scaffold_5 . exon 250533 252526 . + . ID=Phyra73855.5;Parent=Phyra73855;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_5 . CDS 252601 253112 . + 0 ID=Phyra73855;Parent=Phyra73855;rank=6 scaffold_5 . exon 252601 253112 . + . ID=Phyra73855.6;Parent=Phyra73855;constitutive=1;ensembl_phase=1;rank=6 scaffold_5 ensembl protein_coding_gene 254598 255212 . + . ID=Phyra73857;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000064;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 254598 255212 . + . ID=Phyra73857;Parent=Phyra73857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 254598 255212 . + 0 ID=Phyra73857;Parent=Phyra73857;rank=1 scaffold_5 . exon 254598 255212 . + . ID=Phyra73857.1;Parent=Phyra73857;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 255353 256476 . - . ID=Phyra73858;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000065;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 255353 256476 . - . ID=Phyra73858;Parent=Phyra73858;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 255353 256287 . - 0 ID=Phyra73858;Parent=Phyra73858;rank=2 scaffold_5 . exon 255353 256287 . - . ID=Phyra73858.2;Parent=Phyra73858;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 256362 256476 . - 0 ID=Phyra73858;Parent=Phyra73858;rank=1 scaffold_5 . exon 256362 256476 . - . ID=Phyra73858.1;Parent=Phyra73858;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 258099 259349 . - . ID=Phyra73859;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000066;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 258099 259349 . - . ID=Phyra73859;Parent=Phyra73859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 258099 259349 . - 0 ID=Phyra73859;Parent=Phyra73859;rank=1 scaffold_5 . exon 258099 259349 . - . ID=Phyra73859.1;Parent=Phyra73859;constitutive=1;rank=1 scaffold_5 . biological_region 262744 262745 0.999 - . logic_name=eponine scaffold_5 . biological_region 262812 262812 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 262006 264247 . - . ID=Phyra71144;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000013;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 262006 264247 . - . ID=Phyra71144;Parent=Phyra71144;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 262006 262305 . - 0 ID=Phyra71144;Parent=Phyra71144;rank=2 scaffold_5 . exon 262006 262305 . - . ID=Phyra71144.2;Parent=Phyra71144;constitutive=1;rank=2 scaffold_5 . CDS 262385 264247 . - 0 ID=Phyra71144;Parent=Phyra71144;rank=1 scaffold_5 . exon 262385 264247 . - . ID=Phyra71144.1;Parent=Phyra71144;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 264886 268653 . - . ID=Phyra71145;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000014;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 264886 268653 . - . ID=Phyra71145;Parent=Phyra71145;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 264886 268653 . - 0 ID=Phyra71145;Parent=Phyra71145;rank=1 scaffold_5 . exon 264886 268653 . - . ID=Phyra71145.1;Parent=Phyra71145;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 259933 261753 . + . ID=Phyra73860;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000067;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 259933 261753 . + . ID=Phyra73860;Parent=Phyra73860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 259933 261753 . + 0 ID=Phyra73860;Parent=Phyra73860;rank=1 scaffold_5 . exon 259933 261753 . + . ID=Phyra73860.1;Parent=Phyra73860;constitutive=1;rank=1 scaffold_5 . repeat_region 271910 271965 . ? . description=trf scaffold_5 . repeat_region 276982 276990 . ? . description=dust scaffold_5 . repeat_region 277476 277547 . ? . description=trf scaffold_5 . repeat_region 277979 277998 . ? . description=trf scaffold_5 ensembl protein_coding_gene 270188 272998 . + . ID=Phyra73863;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000070;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 270188 272998 . + . ID=Phyra73863;Parent=Phyra73863;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 270188 272998 . + 0 ID=Phyra73863;Parent=Phyra73863;rank=1 scaffold_5 . exon 270188 272998 . + . ID=Phyra73863.1;Parent=Phyra73863;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 273611 276412 . + . ID=Phyra73864;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000071;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 273611 276412 . + . ID=Phyra73864;Parent=Phyra73864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 273611 276412 . + 0 ID=Phyra73864;Parent=Phyra73864;rank=1 scaffold_5 . exon 273611 276412 . + . ID=Phyra73864.1;Parent=Phyra73864;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 277410 279011 . + . ID=Phyra73865;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000072;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 277410 279011 . + . ID=Phyra73865;Parent=Phyra73865;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 277410 277563 . + 0 ID=Phyra73865;Parent=Phyra73865;rank=1 scaffold_5 . exon 277410 277563 . + . ID=Phyra73865.1;Parent=Phyra73865;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 277681 279011 . + 0 ID=Phyra73865;Parent=Phyra73865;rank=2 scaffold_5 . exon 277681 279011 . + . ID=Phyra73865.2;Parent=Phyra73865;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 ensembl protein_coding_gene 279156 279863 . - . ID=Phyra73866;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000073;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 279156 279863 . - . ID=Phyra73866;Parent=Phyra73866;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 279156 279295 . - 0 ID=Phyra73866;Parent=Phyra73866;rank=4 scaffold_5 . exon 279156 279295 . - . ID=Phyra73866.4;Parent=Phyra73866;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 279349 279438 . - 0 ID=Phyra73866;Parent=Phyra73866;rank=3 scaffold_5 . CDS 279498 279559 . - 0 ID=Phyra73866;Parent=Phyra73866;rank=2 scaffold_5 . CDS 279625 279863 . - 0 ID=Phyra73866;Parent=Phyra73866;rank=1 scaffold_5 . biological_region 281801 281803 0.999 + . logic_name=eponine scaffold_5 . exon 279349 279438 . - . ID=Phyra73866.3;Parent=Phyra73866;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_5 . exon 279498 279559 . - . ID=Phyra73866.2;Parent=Phyra73866;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_5 . exon 279625 279863 . - . ID=Phyra73866.1;Parent=Phyra73866;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 279991 281879 . + . ID=Phyra73867;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000074;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 279991 281879 . + . ID=Phyra73867;Parent=Phyra73867;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 279991 280135 . + 0 ID=Phyra73867;Parent=Phyra73867;rank=1 scaffold_5 . exon 279991 280135 . + . ID=Phyra73867.1;Parent=Phyra73867;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 280206 280341 . + 0 ID=Phyra73867;Parent=Phyra73867;rank=2 scaffold_5 . exon 280206 280341 . + . ID=Phyra73867.2;Parent=Phyra73867;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_5 . CDS 280398 280562 . + 0 ID=Phyra73867;Parent=Phyra73867;rank=3 scaffold_5 . exon 280398 280562 . + . ID=Phyra73867.3;Parent=Phyra73867;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_5 . CDS 280640 280705 . + 0 ID=Phyra73867;Parent=Phyra73867;rank=4 scaffold_5 . exon 280640 280705 . + . ID=Phyra73867.4;Parent=Phyra73867;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_5 . CDS 280780 280865 . + 0 ID=Phyra73867;Parent=Phyra73867;rank=5 scaffold_5 . exon 280780 280865 . + . ID=Phyra73867.5;Parent=Phyra73867;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_5 . CDS 280942 281021 . + 0 ID=Phyra73867;Parent=Phyra73867;rank=6 scaffold_5 . exon 280942 281021 . + . ID=Phyra73867.6;Parent=Phyra73867;constitutive=1;ensembl_phase=1;rank=6 scaffold_5 . CDS 281091 281255 . + 0 ID=Phyra73867;Parent=Phyra73867;rank=7 scaffold_5 . exon 281091 281255 . + . ID=Phyra73867.7;Parent=Phyra73867;constitutive=1;rank=7 scaffold_5 . CDS 281334 281447 . + 0 ID=Phyra73867;Parent=Phyra73867;rank=8 scaffold_5 . exon 281334 281447 . + . ID=Phyra73867.8;Parent=Phyra73867;constitutive=1;rank=8 scaffold_5 . CDS 281514 281879 . + 0 ID=Phyra73867;Parent=Phyra73867;rank=9 scaffold_5 . exon 281514 281879 . + . ID=Phyra73867.9;Parent=Phyra73867;constitutive=1;rank=9 scaffold_5 ensembl protein_coding_gene 283594 283896 . - . ID=Phyra73868;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000075;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 283594 283896 . - . ID=Phyra73868;Parent=Phyra73868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 283594 283896 . - 0 ID=Phyra73868;Parent=Phyra73868;rank=1 scaffold_5 . exon 283594 283896 . - . ID=Phyra73868.1;Parent=Phyra73868;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 285499 288264 . - . ID=Phyra73869;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000076;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 285499 288264 . - . ID=Phyra73869;Parent=Phyra73869;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 285499 285521 . - 0 ID=Phyra73869;Parent=Phyra73869;rank=8 scaffold_5 . exon 285499 285521 . - . ID=Phyra73869.8;Parent=Phyra73869;constitutive=1;ensembl_phase=1;rank=8 scaffold_5 . CDS 285592 285622 . - 0 ID=Phyra73869;Parent=Phyra73869;rank=7 scaffold_5 . exon 285592 285622 . - . ID=Phyra73869.7;Parent=Phyra73869;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_5 . CDS 285669 286107 . - 0 ID=Phyra73869;Parent=Phyra73869;rank=6 scaffold_5 . exon 285669 286107 . - . ID=Phyra73869.6;Parent=Phyra73869;constitutive=1;ensembl_phase=2;rank=6 scaffold_5 . CDS 286621 287248 . - 0 ID=Phyra73869;Parent=Phyra73869;rank=5 scaffold_5 . exon 286621 287248 . - . ID=Phyra73869.5;Parent=Phyra73869;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_5 . CDS 287503 287622 . - 0 ID=Phyra73869;Parent=Phyra73869;rank=4 scaffold_5 . exon 287503 287622 . - . ID=Phyra73869.4;Parent=Phyra73869;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 287709 287810 . - 0 ID=Phyra73869;Parent=Phyra73869;rank=3 scaffold_5 . exon 287709 287810 . - . ID=Phyra73869.3;Parent=Phyra73869;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 287896 288009 . - 0 ID=Phyra73869;Parent=Phyra73869;rank=2 scaffold_5 . exon 287896 288009 . - . ID=Phyra73869.2;Parent=Phyra73869;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 288081 288264 . - 0 ID=Phyra73869;Parent=Phyra73869;rank=1 scaffold_5 . exon 288081 288264 . - . ID=Phyra73869.1;Parent=Phyra73869;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . repeat_region 289445 289496 . ? . description=trf scaffold_5 . repeat_region 290230 290261 . ? . description=trf scaffold_5 . repeat_region 290509 290610 . ? . description=trf scaffold_5 . repeat_region 290518 290605 . ? . description=dust scaffold_5 . repeat_region 290520 290610 . ? . description=trf scaffold_5 . repeat_region 290947 291017 . ? . description=trf scaffold_5 . repeat_region 291026 291054 . ? . description=trf scaffold_5 . repeat_region 291026 291054 . ? . description=dust scaffold_5 . repeat_region 291062 291073 . ? . description=dust scaffold_5 . repeat_region 291226 291235 . ? . description=dust scaffold_5 . repeat_region 295044 295062 . ? . description=dust scaffold_5 . repeat_region 295640 296044 . ? . description=dust scaffold_5 . repeat_region 297104 297153 . ? . description=dust scaffold_5 . repeat_region 298275 301578 . ? . description=dust scaffold_5 . biological_region 306684 306686 0.999 - . logic_name=eponine scaffold_5 . biological_region 306707 306710 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 306379 307977 . + . ID=Phyra71146;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000015;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 306379 307977 . + . ID=Phyra71146;Parent=Phyra71146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 306379 307218 . + 0 ID=Phyra71146;Parent=Phyra71146;rank=1 scaffold_5 . exon 306379 307218 . + . ID=Phyra71146.1;Parent=Phyra71146;constitutive=1;rank=1 scaffold_5 . CDS 307281 307472 . + 0 ID=Phyra71146;Parent=Phyra71146;rank=2 scaffold_5 . exon 307281 307472 . + . ID=Phyra71146.2;Parent=Phyra71146;constitutive=1;rank=2 scaffold_5 . CDS 307551 307608 . + 0 ID=Phyra71146;Parent=Phyra71146;rank=3 scaffold_5 . exon 307551 307608 . + . ID=Phyra71146.3;Parent=Phyra71146;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 307701 307762 . + 0 ID=Phyra71146;Parent=Phyra71146;rank=4 scaffold_5 . exon 307701 307762 . + . ID=Phyra71146.4;Parent=Phyra71146;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 307852 307977 . + 0 ID=Phyra71146;Parent=Phyra71146;rank=5 scaffold_5 . exon 307852 307977 . + . ID=Phyra71146.5;Parent=Phyra71146;constitutive=1;rank=5 scaffold_5 . repeat_region 313158 313180 . ? . description=dust scaffold_5 ensembl protein_coding_gene 312477 313088 . + . ID=Phyra71147;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000016;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 312477 313088 . + . ID=Phyra71147;Parent=Phyra71147;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 312477 313088 . + 0 ID=Phyra71147;Parent=Phyra71147;rank=1 scaffold_5 . exon 312477 313088 . + . ID=Phyra71147.1;Parent=Phyra71147;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 311430 312296 . - . ID=Phyra73871;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000078;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 311430 312296 . - . ID=Phyra73871;Parent=Phyra73871;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 311430 311612 . - 0 ID=Phyra73871;Parent=Phyra73871;rank=3 scaffold_5 . exon 311430 311612 . - . ID=Phyra73871.3;Parent=Phyra73871;constitutive=1;rank=3 scaffold_5 . CDS 311700 311915 . - 0 ID=Phyra73871;Parent=Phyra73871;rank=2 scaffold_5 . exon 311700 311915 . - . ID=Phyra73871.2;Parent=Phyra73871;constitutive=1;rank=2 scaffold_5 . CDS 312027 312296 . - 0 ID=Phyra73871;Parent=Phyra73871;rank=1 scaffold_5 . exon 312027 312296 . - . ID=Phyra73871.1;Parent=Phyra73871;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 313221 315985 . - . ID=Phyra73873;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000080;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 313221 315985 . - . ID=Phyra73873;Parent=Phyra73873;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 313221 314261 . - 0 ID=Phyra73873;Parent=Phyra73873;rank=4 scaffold_5 . exon 313221 314261 . - . ID=Phyra73873.4;Parent=Phyra73873;constitutive=1;rank=4 scaffold_5 . CDS 314328 314561 . - 0 ID=Phyra73873;Parent=Phyra73873;rank=3 scaffold_5 . exon 314328 314561 . - . ID=Phyra73873.3;Parent=Phyra73873;constitutive=1;rank=3 scaffold_5 . CDS 314638 315046 . - 0 ID=Phyra73873;Parent=Phyra73873;rank=2 scaffold_5 . exon 314638 315046 . - . ID=Phyra73873.2;Parent=Phyra73873;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 315123 315985 . - 0 ID=Phyra73873;Parent=Phyra73873;rank=1 scaffold_5 . exon 315123 315985 . - . ID=Phyra73873.1;Parent=Phyra73873;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . biological_region 322464 322467 0.999 + . logic_name=eponine scaffold_5 . biological_region 323980 323981 0.999 + . logic_name=eponine scaffold_5 . biological_region 324029 324034 0.999 + . logic_name=eponine scaffold_5 . biological_region 324058 324058 0.999 - . logic_name=eponine scaffold_5 . biological_region 324095 324096 0.999 - . logic_name=eponine scaffold_5 . biological_region 324131 324136 0.999 + . logic_name=eponine scaffold_5 . biological_region 324187 324188 0.999 + . logic_name=eponine scaffold_5 . biological_region 327598 327600 0.999 - . logic_name=eponine scaffold_5 . biological_region 328633 328639 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 322562 325522 . + . ID=Phyra73874;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000081;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 322562 325522 . + . ID=Phyra73874;Parent=Phyra73874;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 322562 323065 . + 0 ID=Phyra73874;Parent=Phyra73874;rank=1 scaffold_5 . exon 322562 323065 . + . ID=Phyra73874.1;Parent=Phyra73874;constitutive=1;rank=1 scaffold_5 . CDS 323188 323331 . + 0 ID=Phyra73874;Parent=Phyra73874;rank=2 scaffold_5 . exon 323188 323331 . + . ID=Phyra73874.2;Parent=Phyra73874;constitutive=1;rank=2 scaffold_5 . CDS 323407 323719 . + 0 ID=Phyra73874;Parent=Phyra73874;rank=3 scaffold_5 . exon 323407 323719 . + . ID=Phyra73874.3;Parent=Phyra73874;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 324044 324897 . + 0 ID=Phyra73874;Parent=Phyra73874;rank=4 scaffold_5 . exon 324044 324897 . + . ID=Phyra73874.4;Parent=Phyra73874;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 324998 325113 . + 0 ID=Phyra73874;Parent=Phyra73874;rank=5 scaffold_5 . exon 324998 325113 . + . ID=Phyra73874.5;Parent=Phyra73874;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_5 . CDS 325186 325345 . + 0 ID=Phyra73874;Parent=Phyra73874;rank=6 scaffold_5 . exon 325186 325345 . + . ID=Phyra73874.6;Parent=Phyra73874;constitutive=1;ensembl_phase=2;rank=6 scaffold_5 . CDS 325409 325522 . + 0 ID=Phyra73874;Parent=Phyra73874;rank=7 scaffold_5 . exon 325409 325522 . + . ID=Phyra73874.7;Parent=Phyra73874;constitutive=1;rank=7 scaffold_5 ensembl protein_coding_gene 327541 329112 . - . ID=Phyra73875;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000082;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 327541 329112 . - . ID=Phyra73875;Parent=Phyra73875;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 327541 329112 . - 0 ID=Phyra73875;Parent=Phyra73875;rank=1 scaffold_5 . exon 327541 329112 . - . ID=Phyra73875.1;Parent=Phyra73875;constitutive=1;rank=1 scaffold_5 . repeat_region 332970 332984 . ? . description=dust scaffold_5 . repeat_region 334933 334959 . ? . description=dust scaffold_5 ensembl protein_coding_gene 336469 337663 . + . ID=Phyra71148;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000017;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 336469 337663 . + . ID=Phyra71148;Parent=Phyra71148;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 336469 336751 . + 0 ID=Phyra71148;Parent=Phyra71148;rank=1 scaffold_5 . exon 336469 336751 . + . ID=Phyra71148.1;Parent=Phyra71148;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 336825 337663 . + 0 ID=Phyra71148;Parent=Phyra71148;rank=2 scaffold_5 . exon 336825 337663 . + . ID=Phyra71148.2;Parent=Phyra71148;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 ensembl protein_coding_gene 332632 334662 . - . ID=Phyra73876;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000083;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 332632 334662 . - . ID=Phyra73876;Parent=Phyra73876;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 332632 332639 . - 0 ID=Phyra73876;Parent=Phyra73876;rank=5 scaffold_5 . exon 332632 332639 . - . ID=Phyra73876.5;Parent=Phyra73876;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 332989 333152 . - 0 ID=Phyra73876;Parent=Phyra73876;rank=4 scaffold_5 . exon 332989 333152 . - . ID=Phyra73876.4;Parent=Phyra73876;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 333269 333480 . - 0 ID=Phyra73876;Parent=Phyra73876;rank=3 scaffold_5 . exon 333269 333480 . - . ID=Phyra73876.3;Parent=Phyra73876;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_5 . CDS 333849 334609 . - 0 ID=Phyra73876;Parent=Phyra73876;rank=2 scaffold_5 . exon 333849 334609 . - . ID=Phyra73876.2;Parent=Phyra73876;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 334632 334662 . - 0 ID=Phyra73876;Parent=Phyra73876;rank=1 scaffold_5 . exon 334632 334662 . - . ID=Phyra73876.1;Parent=Phyra73876;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 334887 336169 . + . ID=Phyra73877;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000084;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 334887 336169 . + . ID=Phyra73877;Parent=Phyra73877;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 334887 335224 . + 0 ID=Phyra73877;Parent=Phyra73877;rank=1 scaffold_5 . exon 334887 335224 . + . ID=Phyra73877.1;Parent=Phyra73877;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 335284 336169 . + 0 ID=Phyra73877;Parent=Phyra73877;rank=2 scaffold_5 . exon 335284 336169 . + . ID=Phyra73877.2;Parent=Phyra73877;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . repeat_region 343082 343165 . ? . description=trf scaffold_5 . repeat_region 343636 343677 . ? . description=trf scaffold_5 . biological_region 344079 344079 0.999 - . logic_name=eponine scaffold_5 . biological_region 344314 344315 0.999 + . logic_name=eponine scaffold_5 . biological_region 344339 344343 0.999 + . logic_name=eponine scaffold_5 . biological_region 344360 344368 0.999 + . logic_name=eponine scaffold_5 . biological_region 344392 344395 0.999 + . logic_name=eponine scaffold_5 . repeat_region 344519 344580 . ? . description=trf scaffold_5 . biological_region 347618 347623 0.999 + . logic_name=eponine scaffold_5 . biological_region 348687 348688 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 342666 344492 . - . ID=Phyra73879;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000086;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 342666 344492 . - . ID=Phyra73879;Parent=Phyra73879;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 342666 344492 . - 0 ID=Phyra73879;Parent=Phyra73879;rank=1 scaffold_5 . exon 342666 344492 . - . ID=Phyra73879.1;Parent=Phyra73879;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 344697 349045 . + . ID=Phyra73880;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000087;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 344697 349045 . + . ID=Phyra73880;Parent=Phyra73880;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 344697 345545 . + 0 ID=Phyra73880;Parent=Phyra73880;rank=1 scaffold_5 . exon 344697 345545 . + . ID=Phyra73880.1;Parent=Phyra73880;constitutive=1;rank=1 scaffold_5 . CDS 345639 345887 . + 0 ID=Phyra73880;Parent=Phyra73880;rank=2 scaffold_5 . exon 345639 345887 . + . ID=Phyra73880.2;Parent=Phyra73880;constitutive=1;rank=2 scaffold_5 . CDS 346233 347153 . + 0 ID=Phyra73880;Parent=Phyra73880;rank=3 scaffold_5 . exon 346233 347153 . + . ID=Phyra73880.3;Parent=Phyra73880;constitutive=1;rank=3 scaffold_5 . CDS 347371 347484 . + 0 ID=Phyra73880;Parent=Phyra73880;rank=4 scaffold_5 . exon 347371 347484 . + . ID=Phyra73880.4;Parent=Phyra73880;constitutive=1;rank=4 scaffold_5 . CDS 347555 348027 . + 0 ID=Phyra73880;Parent=Phyra73880;rank=5 scaffold_5 . exon 347555 348027 . + . ID=Phyra73880.5;Parent=Phyra73880;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_5 . CDS 348050 348321 . + 0 ID=Phyra73880;Parent=Phyra73880;rank=6 scaffold_5 . exon 348050 348321 . + . ID=Phyra73880.6;Parent=Phyra73880;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_5 . CDS 348393 348895 . + 0 ID=Phyra73880;Parent=Phyra73880;rank=7 scaffold_5 . exon 348393 348895 . + . ID=Phyra73880.7;Parent=Phyra73880;constitutive=1;ensembl_phase=1;rank=7 scaffold_5 . CDS 348962 349045 . + 0 ID=Phyra73880;Parent=Phyra73880;rank=8 scaffold_5 . exon 348962 349045 . + . ID=Phyra73880.8;Parent=Phyra73880;constitutive=1;rank=8 scaffold_5 . repeat_region 357522 357529 . ? . description=dust scaffold_5 ensembl protein_coding_gene 349460 351240 . - . ID=Phyra73881;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000088;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 349460 351240 . - . ID=Phyra73881;Parent=Phyra73881;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 349460 349615 . - 0 ID=Phyra73881;Parent=Phyra73881;rank=2 scaffold_5 . exon 349460 349615 . - . ID=Phyra73881.2;Parent=Phyra73881;constitutive=1;rank=2 scaffold_5 . CDS 349693 351240 . - 0 ID=Phyra73881;Parent=Phyra73881;rank=1 scaffold_5 . exon 349693 351240 . - . ID=Phyra73881.1;Parent=Phyra73881;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 351858 352685 . - . ID=Phyra73882;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000089;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 351858 352685 . - . ID=Phyra73882;Parent=Phyra73882;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 351858 351968 . - 0 ID=Phyra73882;Parent=Phyra73882;rank=5 scaffold_5 . exon 351858 351968 . - . ID=Phyra73882.5;Parent=Phyra73882;constitutive=1;rank=5 scaffold_5 . CDS 352037 352158 . - 0 ID=Phyra73882;Parent=Phyra73882;rank=4 scaffold_5 . exon 352037 352158 . - . ID=Phyra73882.4;Parent=Phyra73882;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 352215 352254 . - 0 ID=Phyra73882;Parent=Phyra73882;rank=3 scaffold_5 . exon 352215 352254 . - . ID=Phyra73882.3;Parent=Phyra73882;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 352350 352519 . - 0 ID=Phyra73882;Parent=Phyra73882;rank=2 scaffold_5 . exon 352350 352519 . - . ID=Phyra73882.2;Parent=Phyra73882;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 352598 352685 . - 0 ID=Phyra73882;Parent=Phyra73882;rank=1 scaffold_5 . exon 352598 352685 . - . ID=Phyra73882.1;Parent=Phyra73882;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 352872 354736 . - . ID=Phyra73883;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000090;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 352872 354736 . - . ID=Phyra73883;Parent=Phyra73883;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 352872 353427 . - 0 ID=Phyra73883;Parent=Phyra73883;rank=4 scaffold_5 . exon 352872 353427 . - . ID=Phyra73883.4;Parent=Phyra73883;constitutive=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 353500 354024 . - 0 ID=Phyra73883;Parent=Phyra73883;rank=3 scaffold_5 . exon 353500 354024 . - . ID=Phyra73883.3;Parent=Phyra73883;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_5 . CDS 354091 354386 . - 0 ID=Phyra73883;Parent=Phyra73883;rank=2 scaffold_5 . exon 354091 354386 . - . ID=Phyra73883.2;Parent=Phyra73883;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 354458 354736 . - 0 ID=Phyra73883;Parent=Phyra73883;rank=1 scaffold_5 . exon 354458 354736 . - . ID=Phyra73883.1;Parent=Phyra73883;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 355911 358164 . + . ID=Phyra73884;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000091;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 355911 358164 . + . ID=Phyra73884;Parent=Phyra73884;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 355911 355933 . + 0 ID=Phyra73884;Parent=Phyra73884;rank=1 scaffold_5 . exon 355911 355933 . + . ID=Phyra73884.1;Parent=Phyra73884;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 356048 356088 . + 0 ID=Phyra73884;Parent=Phyra73884;rank=2 scaffold_5 . exon 356048 356088 . + . ID=Phyra73884.2;Parent=Phyra73884;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 356170 356336 . + 0 ID=Phyra73884;Parent=Phyra73884;rank=3 scaffold_5 . exon 356170 356336 . + . ID=Phyra73884.3;Parent=Phyra73884;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 356401 356572 . + 0 ID=Phyra73884;Parent=Phyra73884;rank=4 scaffold_5 . exon 356401 356572 . + . ID=Phyra73884.4;Parent=Phyra73884;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 356657 357502 . + 0 ID=Phyra73884;Parent=Phyra73884;rank=5 scaffold_5 . exon 356657 357502 . + . ID=Phyra73884.5;Parent=Phyra73884;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 357533 358164 . + 0 ID=Phyra73884;Parent=Phyra73884;rank=6 scaffold_5 . exon 357533 358164 . + . ID=Phyra73884.6;Parent=Phyra73884;constitutive=1;ensembl_phase=1;rank=6 scaffold_5 ensembl protein_coding_gene 358749 361119 . + . ID=Phyra73885;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000092;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 358749 361119 . + . ID=Phyra73885;Parent=Phyra73885;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 358749 359246 . + 0 ID=Phyra73885;Parent=Phyra73885;rank=1 scaffold_5 . exon 358749 359246 . + . ID=Phyra73885.1;Parent=Phyra73885;constitutive=1;rank=1 scaffold_5 . CDS 359324 359889 . + 0 ID=Phyra73885;Parent=Phyra73885;rank=2 scaffold_5 . CDS 360469 360616 . + 0 ID=Phyra73885;Parent=Phyra73885;rank=3 scaffold_5 . CDS 360712 360814 . + 0 ID=Phyra73885;Parent=Phyra73885;rank=4 scaffold_5 . CDS 360908 361119 . + 0 ID=Phyra73885;Parent=Phyra73885;rank=5 scaffold_5 . biological_region 362319 362325 0.999 + . logic_name=eponine scaffold_5 . biological_region 362380 362386 0.999 - . logic_name=eponine scaffold_5 . biological_region 362396 362401 0.999 + . logic_name=eponine scaffold_5 . biological_region 365193 365197 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 361240 362484 . - . ID=Phyra71149;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000018;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 361240 362484 . - . ID=Phyra71149;Parent=Phyra71149;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 361240 362484 . - 0 ID=Phyra71149;Parent=Phyra71149;rank=1 scaffold_5 . exon 361240 362484 . - . ID=Phyra71149.1;Parent=Phyra71149;constitutive=1;rank=1 scaffold_5 . exon 359324 359889 . + . ID=Phyra73885.2;Parent=Phyra73885;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . exon 360469 360616 . + . ID=Phyra73885.3;Parent=Phyra73885;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . exon 360712 360814 . + . ID=Phyra73885.4;Parent=Phyra73885;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . exon 360908 361119 . + . ID=Phyra73885.5;Parent=Phyra73885;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 ensembl protein_coding_gene 364995 366047 . - . ID=Phyra73888;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000095;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 364995 366047 . - . ID=Phyra73888;Parent=Phyra73888;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 364995 365676 . - 0 ID=Phyra73888;Parent=Phyra73888;rank=3 scaffold_5 . exon 364995 365676 . - . ID=Phyra73888.3;Parent=Phyra73888;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 365760 365860 . - 0 ID=Phyra73888;Parent=Phyra73888;rank=2 scaffold_5 . exon 365760 365860 . - . ID=Phyra73888.2;Parent=Phyra73888;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 365937 366047 . - 0 ID=Phyra73888;Parent=Phyra73888;rank=1 scaffold_5 . exon 365937 366047 . - . ID=Phyra73888.1;Parent=Phyra73888;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 366248 368839 . - . ID=Phyra73889;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000096;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 366248 368839 . - . ID=Phyra73889;Parent=Phyra73889;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 366248 368839 . - 0 ID=Phyra73889;Parent=Phyra73889;rank=1 scaffold_5 . exon 366248 368839 . - . ID=Phyra73889.1;Parent=Phyra73889;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 362787 364016 . + . ID=Phyra93734;biotype=protein_coding;external_name=C_scaffold_5000025;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 362787 364016 . + . ID=Phyra93734;Parent=Phyra93734;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 362787 363158 . + 0 ID=Phyra93734;Parent=Phyra93734;rank=1 scaffold_5 . exon 362787 363158 . + . ID=Phyra93734.1;Parent=Phyra93734;constitutive=1;rank=1 scaffold_5 . CDS 363234 363896 . + 0 ID=Phyra93734;Parent=Phyra93734;rank=2 scaffold_5 . exon 363234 363896 . + . ID=Phyra93734.2;Parent=Phyra93734;constitutive=1;rank=2 scaffold_5 . CDS 363936 364016 . + 0 ID=Phyra93734;Parent=Phyra93734;rank=3 scaffold_5 . exon 363936 364016 . + . ID=Phyra93734.3;Parent=Phyra93734;constitutive=1;rank=3 scaffold_5 . repeat_region 376776 376802 . ? . description=trf scaffold_5 ensembl protein_coding_gene 375199 375573 . - . ID=Phyra49838;biotype=protein_coding;external_name=gwEuk.5.58.1;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 375199 375573 . - . ID=Phyra49838;Parent=Phyra49838;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 375199 375307 . - 0 ID=Phyra49838;Parent=Phyra49838;rank=2 scaffold_5 . exon 375199 375307 . - . ID=Phyra49838.2;Parent=Phyra49838;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 375383 375573 . - 0 ID=Phyra49838;Parent=Phyra49838;rank=1 scaffold_5 . exon 375383 375573 . - . ID=Phyra49838.1;Parent=Phyra49838;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 378480 379850 . - . ID=Phyra71150;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000019;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 378480 379850 . - . ID=Phyra71150;Parent=Phyra71150;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 378480 379109 . - 0 ID=Phyra71150;Parent=Phyra71150;rank=3 scaffold_5 . exon 378480 379109 . - . ID=Phyra71150.3;Parent=Phyra71150;constitutive=1;rank=3 scaffold_5 . CDS 379133 379154 . - 0 ID=Phyra71150;Parent=Phyra71150;rank=2 scaffold_5 . CDS 379219 379850 . - 0 ID=Phyra71150;Parent=Phyra71150;rank=1 scaffold_5 ensembl protein_coding_gene 374252 374941 . - . ID=Phyra73890;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000097;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 374252 374941 . - . ID=Phyra73890;Parent=Phyra73890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 374252 374941 . - 0 ID=Phyra73890;Parent=Phyra73890;rank=1 scaffold_5 . exon 374252 374941 . - . ID=Phyra73890.1;Parent=Phyra73890;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 375946 377851 . + . ID=Phyra73892;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000099;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 375946 377851 . + . ID=Phyra73892;Parent=Phyra73892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 375946 377597 . + 0 ID=Phyra73892;Parent=Phyra73892;rank=1 scaffold_5 . exon 375946 377597 . + . ID=Phyra73892.1;Parent=Phyra73892;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 377674 377851 . + 0 ID=Phyra73892;Parent=Phyra73892;rank=2 scaffold_5 . exon 377674 377851 . + . ID=Phyra73892.2;Parent=Phyra73892;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . biological_region 379118 379119 0.999 + . logic_name=eponine scaffold_5 . repeat_region 380964 380971 . ? . description=dust scaffold_5 . biological_region 381329 381332 0.999 + . logic_name=eponine scaffold_5 . biological_region 382256 382257 0.999 - . logic_name=eponine scaffold_5 . biological_region 382277 382283 0.999 - . logic_name=eponine scaffold_5 . biological_region 387157 387158 0.999 + . logic_name=eponine scaffold_5 ensembl tRNA_gene 380608 380680 . - . ID=EPrPRAG00000000071;biotype=tRNA;description=tRNA-Arg for anticodon CCU [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_5 ensembl transcript 380608 380680 . - . ID=EPrPRAT00000000071;Parent=EPrPRAG00000000071;biotype=tRNA;logic_name=ncrna_eg scaffold_5 . exon 380608 380680 . - . ID=EPrPRAE00000000071;Parent=EPrPRAT00000000071;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . exon 379133 379154 . - . ID=Phyra71150.2;Parent=Phyra71150;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . exon 379219 379850 . - . ID=Phyra71150.1;Parent=Phyra71150;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 381217 382350 . + . ID=Phyra71151;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000020;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 381217 382350 . + . ID=Phyra71151;Parent=Phyra71151;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 381217 382350 . + 0 ID=Phyra71151;Parent=Phyra71151;rank=1 scaffold_5 . exon 381217 382350 . + . ID=Phyra71151.1;Parent=Phyra71151;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 382773 385325 . + . ID=Phyra73895;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000102;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 382773 385325 . + . ID=Phyra73895;Parent=Phyra73895;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 382773 385325 . + 0 ID=Phyra73895;Parent=Phyra73895;rank=1 scaffold_5 . exon 382773 385325 . + . ID=Phyra73895.1;Parent=Phyra73895;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 385950 388486 . + . ID=Phyra73896;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000103;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 385950 388486 . + . ID=Phyra73896;Parent=Phyra73896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 385950 387587 . + 0 ID=Phyra73896;Parent=Phyra73896;rank=1 scaffold_5 . exon 385950 387587 . + . ID=Phyra73896.1;Parent=Phyra73896;constitutive=1;rank=1 scaffold_5 . CDS 387680 388486 . + 0 ID=Phyra73896;Parent=Phyra73896;rank=2 scaffold_5 . exon 387680 388486 . + . ID=Phyra73896.2;Parent=Phyra73896;constitutive=1;rank=2 scaffold_5 . repeat_region 392734 392778 . ? . description=trf scaffold_5 . repeat_region 392741 392786 . ? . description=trf scaffold_5 . repeat_region 396970 396993 . ? . description=trf scaffold_5 ensembl protein_coding_gene 393003 394352 . + . ID=Phyra49859;biotype=protein_coding;external_name=gwEuk.5.79.1;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 393003 394352 . + . ID=Phyra49859;Parent=Phyra49859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 393003 394352 . + 0 ID=Phyra49859;Parent=Phyra49859;rank=1 scaffold_5 . exon 393003 394352 . + . ID=Phyra49859.1;Parent=Phyra49859;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 390180 392225 . - . ID=Phyra71152;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000021;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 390180 392225 . - . ID=Phyra71152;Parent=Phyra71152;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 390180 392225 . - 0 ID=Phyra71152;Parent=Phyra71152;rank=1 scaffold_5 . exon 390180 392225 . - . ID=Phyra71152.1;Parent=Phyra71152;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 395337 398280 . - . ID=Phyra73899;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000106;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 395337 398280 . - . ID=Phyra73899;Parent=Phyra73899;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 395337 395682 . - 0 ID=Phyra73899;Parent=Phyra73899;rank=3 scaffold_5 . exon 395337 395682 . - . ID=Phyra73899.3;Parent=Phyra73899;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 395958 396129 . - 0 ID=Phyra73899;Parent=Phyra73899;rank=2 scaffold_5 . exon 395958 396129 . - . ID=Phyra73899.2;Parent=Phyra73899;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_5 . CDS 396207 398280 . - 0 ID=Phyra73899;Parent=Phyra73899;rank=1 scaffold_5 . exon 396207 398280 . - . ID=Phyra73899.1;Parent=Phyra73899;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . repeat_region 399055 399064 . ? . description=dust scaffold_5 . biological_region 404810 404810 0.999 + . logic_name=eponine scaffold_5 . biological_region 404939 404943 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 402303 405097 . - . ID=Phyra73900;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000107;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 402303 405097 . - . ID=Phyra73900;Parent=Phyra73900;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 402303 402911 . - 0 ID=Phyra73900;Parent=Phyra73900;rank=5 scaffold_5 . exon 402303 402911 . - . ID=Phyra73900.5;Parent=Phyra73900;constitutive=1;rank=5 scaffold_5 . CDS 402987 403232 . - 0 ID=Phyra73900;Parent=Phyra73900;rank=4 scaffold_5 . exon 402987 403232 . - . ID=Phyra73900.4;Parent=Phyra73900;constitutive=1;rank=4 scaffold_5 . CDS 403311 403739 . - 0 ID=Phyra73900;Parent=Phyra73900;rank=3 scaffold_5 . exon 403311 403739 . - . ID=Phyra73900.3;Parent=Phyra73900;constitutive=1;rank=3 scaffold_5 . CDS 403805 403936 . - 0 ID=Phyra73900;Parent=Phyra73900;rank=2 scaffold_5 . exon 403805 403936 . - . ID=Phyra73900.2;Parent=Phyra73900;constitutive=1;rank=2 scaffold_5 . CDS 404003 405097 . - 0 ID=Phyra73900;Parent=Phyra73900;rank=1 scaffold_5 . exon 404003 405097 . - . ID=Phyra73900.1;Parent=Phyra73900;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 405231 406000 . + . ID=Phyra73901;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000108;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 405231 406000 . + . ID=Phyra73901;Parent=Phyra73901;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 405231 405311 . + 0 ID=Phyra73901;Parent=Phyra73901;rank=1 scaffold_5 . exon 405231 405311 . + . ID=Phyra73901.1;Parent=Phyra73901;constitutive=1;rank=1 scaffold_5 . CDS 405392 405486 . + 0 ID=Phyra73901;Parent=Phyra73901;rank=2 scaffold_5 . exon 405392 405486 . + . ID=Phyra73901.2;Parent=Phyra73901;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 405550 405661 . + 0 ID=Phyra73901;Parent=Phyra73901;rank=3 scaffold_5 . exon 405550 405661 . + . ID=Phyra73901.3;Parent=Phyra73901;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 405701 406000 . + 0 ID=Phyra73901;Parent=Phyra73901;rank=4 scaffold_5 . exon 405701 406000 . + . ID=Phyra73901.4;Parent=Phyra73901;constitutive=1;rank=4 scaffold_5 ensembl protein_coding_gene 406080 411062 . - . ID=Phyra73902;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000109;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 406080 411062 . - . ID=Phyra73902;Parent=Phyra73902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 406080 406334 . - 0 ID=Phyra73902;Parent=Phyra73902;rank=7 scaffold_5 . exon 406080 406334 . - . ID=Phyra73902.7;Parent=Phyra73902;constitutive=1;rank=7 scaffold_5 . CDS 406406 406489 . - 0 ID=Phyra73902;Parent=Phyra73902;rank=6 scaffold_5 . exon 406406 406489 . - . ID=Phyra73902.6;Parent=Phyra73902;constitutive=1;rank=6 scaffold_5 . CDS 406562 406642 . - 0 ID=Phyra73902;Parent=Phyra73902;rank=5 scaffold_5 . exon 406562 406642 . - . ID=Phyra73902.5;Parent=Phyra73902;constitutive=1;rank=5 scaffold_5 . CDS 406725 406981 . - 0 ID=Phyra73902;Parent=Phyra73902;rank=4 scaffold_5 . exon 406725 406981 . - . ID=Phyra73902.4;Parent=Phyra73902;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 407237 407300 . - 0 ID=Phyra73902;Parent=Phyra73902;rank=3 scaffold_5 . exon 407237 407300 . - . ID=Phyra73902.3;Parent=Phyra73902;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 407406 410213 . - 0 ID=Phyra73902;Parent=Phyra73902;rank=2 scaffold_5 . exon 407406 410213 . - . ID=Phyra73902.2;Parent=Phyra73902;constitutive=1;rank=2 scaffold_5 . CDS 410283 411062 . - 0 ID=Phyra73902;Parent=Phyra73902;rank=1 scaffold_5 ensembl protein_coding_gene 411323 413442 . - . ID=Phyra71153;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000022;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 411323 413442 . - . ID=Phyra71153;Parent=Phyra71153;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 411323 411400 . - 0 ID=Phyra71153;Parent=Phyra71153;rank=2 scaffold_5 . exon 411323 411400 . - . ID=Phyra71153.2;Parent=Phyra71153;constitutive=1;rank=2 scaffold_5 . CDS 411433 413442 . - 0 ID=Phyra71153;Parent=Phyra71153;rank=1 scaffold_5 . exon 411433 413442 . - . ID=Phyra71153.1;Parent=Phyra71153;constitutive=1;rank=1 scaffold_5 . exon 410283 411062 . - . ID=Phyra73902.1;Parent=Phyra73902;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 414283 414953 . + . ID=Phyra73904;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000111;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 414283 414953 . + . ID=Phyra73904;Parent=Phyra73904;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 414283 414323 . + 0 ID=Phyra73904;Parent=Phyra73904;rank=1 scaffold_5 . exon 414283 414323 . + . ID=Phyra73904.1;Parent=Phyra73904;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 414395 414497 . + 0 ID=Phyra73904;Parent=Phyra73904;rank=2 scaffold_5 . exon 414395 414497 . + . ID=Phyra73904.2;Parent=Phyra73904;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 414577 414921 . + 0 ID=Phyra73904;Parent=Phyra73904;rank=3 scaffold_5 . exon 414577 414921 . + . ID=Phyra73904.3;Parent=Phyra73904;constitutive=1;rank=3 scaffold_5 . CDS 414942 414953 . + 0 ID=Phyra73904;Parent=Phyra73904;rank=4 scaffold_5 . exon 414942 414953 . + . ID=Phyra73904.4;Parent=Phyra73904;constitutive=1;rank=4 scaffold_5 ensembl protein_coding_gene 415072 416674 . - . ID=Phyra73905;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000112;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 415072 416674 . - . ID=Phyra73905;Parent=Phyra73905;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 415072 416292 . - 0 ID=Phyra73905;Parent=Phyra73905;rank=2 scaffold_5 . exon 415072 416292 . - . ID=Phyra73905.2;Parent=Phyra73905;constitutive=1;rank=2 scaffold_5 . CDS 416375 416674 . - 0 ID=Phyra73905;Parent=Phyra73905;rank=1 scaffold_5 . exon 416375 416674 . - . ID=Phyra73905.1;Parent=Phyra73905;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 416812 418473 . + . ID=Phyra73906;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000113;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 416812 418473 . + . ID=Phyra73906;Parent=Phyra73906;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 416812 418473 . + 0 ID=Phyra73906;Parent=Phyra73906;rank=1 scaffold_5 . exon 416812 418473 . + . ID=Phyra73906.1;Parent=Phyra73906;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 418701 420338 . + . ID=Phyra73907;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000114;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 418701 420338 . + . ID=Phyra73907;Parent=Phyra73907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 418701 418765 . + 0 ID=Phyra73907;Parent=Phyra73907;rank=1 scaffold_5 . exon 418701 418765 . + . ID=Phyra73907.1;Parent=Phyra73907;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 418861 419013 . + 0 ID=Phyra73907;Parent=Phyra73907;rank=2 scaffold_5 . exon 418861 419013 . + . ID=Phyra73907.2;Parent=Phyra73907;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . CDS 419043 419113 . + 0 ID=Phyra73907;Parent=Phyra73907;rank=3 scaffold_5 . CDS 419202 419234 . + 0 ID=Phyra73907;Parent=Phyra73907;rank=4 scaffold_5 . CDS 419300 419433 . + 0 ID=Phyra73907;Parent=Phyra73907;rank=5 scaffold_5 . CDS 419513 419692 . + 0 ID=Phyra73907;Parent=Phyra73907;rank=6 scaffold_5 . CDS 419768 420031 . + 0 ID=Phyra73907;Parent=Phyra73907;rank=7 scaffold_5 . CDS 420114 420338 . + 0 ID=Phyra73907;Parent=Phyra73907;rank=8 scaffold_5 . biological_region 422536 422542 0.999 - . logic_name=eponine scaffold_5 . biological_region 422563 422565 0.999 - . logic_name=eponine scaffold_5 . biological_region 422581 422585 0.999 - . logic_name=eponine scaffold_5 . biological_region 422600 422602 0.999 - . logic_name=eponine scaffold_5 . biological_region 423199 423201 0.999 + . logic_name=eponine scaffold_5 . biological_region 423304 423305 0.999 - . logic_name=eponine scaffold_5 . biological_region 425985 425992 0.999 - . logic_name=eponine scaffold_5 . repeat_region 428373 428433 . ? . description=dust scaffold_5 . exon 419043 419113 . + . ID=Phyra73907.3;Parent=Phyra73907;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . exon 419202 419234 . + . ID=Phyra73907.4;Parent=Phyra73907;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_5 . exon 419300 419433 . + . ID=Phyra73907.5;Parent=Phyra73907;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . exon 419513 419692 . + . ID=Phyra73907.6;Parent=Phyra73907;constitutive=1;rank=6 scaffold_5 . exon 419768 420031 . + . ID=Phyra73907.7;Parent=Phyra73907;constitutive=1;rank=7 scaffold_5 . exon 420114 420338 . + . ID=Phyra73907.8;Parent=Phyra73907;constitutive=1;rank=8 scaffold_5 ensembl protein_coding_gene 421550 422034 . - . ID=Phyra73908;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000115;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 421550 422034 . - . ID=Phyra73908;Parent=Phyra73908;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 421550 421729 . - 0 ID=Phyra73908;Parent=Phyra73908;rank=3 scaffold_5 . exon 421550 421729 . - . ID=Phyra73908.3;Parent=Phyra73908;constitutive=1;rank=3 scaffold_5 . CDS 421803 421845 . - 0 ID=Phyra73908;Parent=Phyra73908;rank=2 scaffold_5 . exon 421803 421845 . - . ID=Phyra73908.2;Parent=Phyra73908;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 421919 422034 . - 0 ID=Phyra73908;Parent=Phyra73908;rank=1 scaffold_5 . exon 421919 422034 . - . ID=Phyra73908.1;Parent=Phyra73908;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 422408 424440 . + . ID=Phyra73909;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000116;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 422408 424440 . + . ID=Phyra73909;Parent=Phyra73909;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 422408 422547 . + 0 ID=Phyra73909;Parent=Phyra73909;rank=1 scaffold_5 . exon 422408 422547 . + . ID=Phyra73909.1;Parent=Phyra73909;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 422718 424440 . + 0 ID=Phyra73909;Parent=Phyra73909;rank=2 scaffold_5 . exon 422718 424440 . + . ID=Phyra73909.2;Parent=Phyra73909;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 ensembl protein_coding_gene 425147 427152 . + . ID=Phyra73910;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000117;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 425147 427152 . + . ID=Phyra73910;Parent=Phyra73910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 425147 425304 . + 0 ID=Phyra73910;Parent=Phyra73910;rank=1 scaffold_5 . exon 425147 425304 . + . ID=Phyra73910.1;Parent=Phyra73910;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 425373 425411 . + 0 ID=Phyra73910;Parent=Phyra73910;rank=2 scaffold_5 . exon 425373 425411 . + . ID=Phyra73910.2;Parent=Phyra73910;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . CDS 425484 427152 . + 0 ID=Phyra73910;Parent=Phyra73910;rank=3 scaffold_5 . exon 425484 427152 . + . ID=Phyra73910.3;Parent=Phyra73910;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 ensembl protein_coding_gene 427472 428854 . - . ID=Phyra73911;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000118;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 427472 428854 . - . ID=Phyra73911;Parent=Phyra73911;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 427472 428854 . - 0 ID=Phyra73911;Parent=Phyra73911;rank=1 scaffold_5 . exon 427472 428854 . - . ID=Phyra73911.1;Parent=Phyra73911;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 429139 429819 . + . ID=Phyra73912;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000119;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 429139 429819 . + . ID=Phyra73912;Parent=Phyra73912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 429139 429819 . + 0 ID=Phyra73912;Parent=Phyra73912;rank=1 scaffold_5 . exon 429139 429819 . + . ID=Phyra73912.1;Parent=Phyra73912;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 430092 431006 . - . ID=Phyra73913;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000120;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 430092 431006 . - . ID=Phyra73913;Parent=Phyra73913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 430092 430151 . - 0 ID=Phyra73913;Parent=Phyra73913;rank=6 scaffold_5 . exon 430092 430151 . - . ID=Phyra73913.6;Parent=Phyra73913;constitutive=1;rank=6 scaffold_5 . CDS 430233 430270 . - 0 ID=Phyra73913;Parent=Phyra73913;rank=5 scaffold_5 . exon 430233 430270 . - . ID=Phyra73913.5;Parent=Phyra73913;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 430351 430438 . - 0 ID=Phyra73913;Parent=Phyra73913;rank=4 scaffold_5 . exon 430351 430438 . - . ID=Phyra73913.4;Parent=Phyra73913;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 430511 430591 . - 0 ID=Phyra73913;Parent=Phyra73913;rank=3 scaffold_5 . exon 430511 430591 . - . ID=Phyra73913.3;Parent=Phyra73913;constitutive=1;rank=3 scaffold_5 . CDS 430659 430782 . - 0 ID=Phyra73913;Parent=Phyra73913;rank=2 scaffold_5 . exon 430659 430782 . - . ID=Phyra73913.2;Parent=Phyra73913;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 430876 431006 . - 0 ID=Phyra73913;Parent=Phyra73913;rank=1 scaffold_5 . exon 430876 431006 . - . ID=Phyra73913.1;Parent=Phyra73913;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . repeat_region 439958 439975 . ? . description=dust scaffold_5 . repeat_region 445633 445819 . ? . description=dust scaffold_5 . repeat_region 445944 445960 . ? . description=dust scaffold_5 . biological_region 446250 446250 0.999 - . logic_name=eponine scaffold_5 . biological_region 447408 447410 0.999 - . logic_name=eponine scaffold_5 . biological_region 447465 447468 0.999 - . logic_name=eponine scaffold_5 . biological_region 447709 447711 0.999 - . logic_name=eponine scaffold_5 . biological_region 447929 447935 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 442949 443811 . + . ID=Phyra73914;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000121;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 442949 443811 . + . ID=Phyra73914;Parent=Phyra73914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 442949 443420 . + 0 ID=Phyra73914;Parent=Phyra73914;rank=1 scaffold_5 . exon 442949 443420 . + . ID=Phyra73914.1;Parent=Phyra73914;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 443501 443811 . + 0 ID=Phyra73914;Parent=Phyra73914;rank=2 scaffold_5 . exon 443501 443811 . + . ID=Phyra73914.2;Parent=Phyra73914;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 ensembl protein_coding_gene 444577 445542 . - . ID=Phyra73915;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000122;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 444577 445542 . - . ID=Phyra73915;Parent=Phyra73915;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 444577 445542 . - 0 ID=Phyra73915;Parent=Phyra73915;rank=1 scaffold_5 . exon 444577 445542 . - . ID=Phyra73915.1;Parent=Phyra73915;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 446095 448563 . - . ID=Phyra73916;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000123;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 446095 448563 . - . ID=Phyra73916;Parent=Phyra73916;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 446095 447726 . - 0 ID=Phyra73916;Parent=Phyra73916;rank=3 scaffold_5 . exon 446095 447726 . - . ID=Phyra73916.3;Parent=Phyra73916;constitutive=1;rank=3 scaffold_5 . CDS 447846 448255 . - 0 ID=Phyra73916;Parent=Phyra73916;rank=2 scaffold_5 . exon 447846 448255 . - . ID=Phyra73916.2;Parent=Phyra73916;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 448386 448563 . - 0 ID=Phyra73916;Parent=Phyra73916;rank=1 scaffold_5 . exon 448386 448563 . - . ID=Phyra73916.1;Parent=Phyra73916;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . repeat_region 454743 454933 . ? . description=trf scaffold_5 ensembl protein_coding_gene 454654 455007 . - . ID=Phyra73918;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000125;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 454654 455007 . - . ID=Phyra73918;Parent=Phyra73918;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 454654 455007 . - 0 ID=Phyra73918;Parent=Phyra73918;rank=1 scaffold_5 . exon 454654 455007 . - . ID=Phyra73918.1;Parent=Phyra73918;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 449616 450380 . - . ID=Phyra93746;biotype=protein_coding;external_name=C_scaffold_5000037;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 449616 450380 . - . ID=Phyra93746;Parent=Phyra93746;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 449616 450380 . - 0 ID=Phyra93746;Parent=Phyra93746;rank=1 scaffold_5 . exon 449616 450380 . - . ID=Phyra93746.1;Parent=Phyra93746;constitutive=1;rank=1 scaffold_5 . repeat_region 459180 459229 . ? . description=dust scaffold_5 . biological_region 459371 459376 0.999 - . logic_name=eponine scaffold_5 . biological_region 459411 459412 0.999 + . logic_name=eponine scaffold_5 . biological_region 459446 459451 0.999 + . logic_name=eponine scaffold_5 . biological_region 459472 459476 0.999 - . logic_name=eponine scaffold_5 . biological_region 459525 459528 0.999 - . logic_name=eponine scaffold_5 . biological_region 461046 461050 0.999 - . logic_name=eponine scaffold_5 . biological_region 462501 462503 0.999 - . logic_name=eponine scaffold_5 . repeat_region 462744 462754 . ? . description=dust scaffold_5 . repeat_region 463800 467243 . ? . description=dust scaffold_5 . repeat_region 469432 469456 . ? . description=trf scaffold_5 ensembl protein_coding_gene 473019 474181 . + . ID=Phyra73919;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000126;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 473019 474181 . + . ID=Phyra73919;Parent=Phyra73919;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 473019 473158 . + 0 ID=Phyra73919;Parent=Phyra73919;rank=1 scaffold_5 . exon 473019 473158 . + . ID=Phyra73919.1;Parent=Phyra73919;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 473198 473292 . + 0 ID=Phyra73919;Parent=Phyra73919;rank=2 scaffold_5 . exon 473198 473292 . + . ID=Phyra73919.2;Parent=Phyra73919;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 473313 473437 . + 0 ID=Phyra73919;Parent=Phyra73919;rank=3 scaffold_5 . exon 473313 473437 . + . ID=Phyra73919.3;Parent=Phyra73919;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 473705 474181 . + 0 ID=Phyra73919;Parent=Phyra73919;rank=4 scaffold_5 . exon 473705 474181 . + . ID=Phyra73919.4;Parent=Phyra73919;constitutive=1;rank=4 scaffold_5 . biological_region 479325 479328 0.999 - . logic_name=eponine scaffold_5 . repeat_region 480297 480306 . ? . description=dust scaffold_5 . repeat_region 483100 483107 . ? . description=dust scaffold_5 . biological_region 487508 487512 0.999 + . logic_name=eponine scaffold_5 . biological_region 487604 487607 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 482423 485879 . + . ID=Phyra71154;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000023;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 482423 485879 . + . ID=Phyra71154;Parent=Phyra71154;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 482423 484053 . + 0 ID=Phyra71154;Parent=Phyra71154;rank=1 scaffold_5 . exon 482423 484053 . + . ID=Phyra71154.1;Parent=Phyra71154;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 484117 485386 . + 0 ID=Phyra71154;Parent=Phyra71154;rank=2 scaffold_5 . exon 484117 485386 . + . ID=Phyra71154.2;Parent=Phyra71154;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 485423 485465 . + 0 ID=Phyra71154;Parent=Phyra71154;rank=3 scaffold_5 . exon 485423 485465 . + . ID=Phyra71154.3;Parent=Phyra71154;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 485514 485770 . + 0 ID=Phyra71154;Parent=Phyra71154;rank=4 scaffold_5 . exon 485514 485770 . + . ID=Phyra71154.4;Parent=Phyra71154;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 485853 485879 . + 0 ID=Phyra71154;Parent=Phyra71154;rank=5 scaffold_5 . exon 485853 485879 . + . ID=Phyra71154.5;Parent=Phyra71154;constitutive=1;rank=5 scaffold_5 ensembl protein_coding_gene 480655 482096 . + . ID=Phyra73920;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000127;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 480655 482096 . + . ID=Phyra73920;Parent=Phyra73920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 480655 480958 . + 0 ID=Phyra73920;Parent=Phyra73920;rank=1 scaffold_5 . exon 480655 480958 . + . ID=Phyra73920.1;Parent=Phyra73920;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 481023 481378 . + 0 ID=Phyra73920;Parent=Phyra73920;rank=2 scaffold_5 . exon 481023 481378 . + . ID=Phyra73920.2;Parent=Phyra73920;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 481454 481516 . + 0 ID=Phyra73920;Parent=Phyra73920;rank=3 scaffold_5 . exon 481454 481516 . + . ID=Phyra73920.3;Parent=Phyra73920;constitutive=1;rank=3 scaffold_5 . CDS 481606 481671 . + 0 ID=Phyra73920;Parent=Phyra73920;rank=4 scaffold_5 . exon 481606 481671 . + . ID=Phyra73920.4;Parent=Phyra73920;constitutive=1;rank=4 scaffold_5 . CDS 481717 481868 . + 0 ID=Phyra73920;Parent=Phyra73920;rank=5 scaffold_5 . exon 481717 481868 . + . ID=Phyra73920.5;Parent=Phyra73920;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_5 . CDS 481910 482096 . + 0 ID=Phyra73920;Parent=Phyra73920;rank=6 scaffold_5 . exon 481910 482096 . + . ID=Phyra73920.6;Parent=Phyra73920;constitutive=1;ensembl_phase=2;rank=6 scaffold_5 ensembl protein_coding_gene 488147 490088 . + . ID=Phyra73923;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000130;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 488147 490088 . + . ID=Phyra73923;Parent=Phyra73923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 488147 489777 . + 0 ID=Phyra73923;Parent=Phyra73923;rank=1 scaffold_5 . exon 488147 489777 . + . ID=Phyra73923.1;Parent=Phyra73923;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 490022 490088 . + 0 ID=Phyra73923;Parent=Phyra73923;rank=2 scaffold_5 ensembl protein_coding_gene 486670 487137 . + . ID=Phyra93749;biotype=protein_coding;external_name=C_scaffold_5000040;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 486670 487137 . + . ID=Phyra93749;Parent=Phyra93749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 486670 487137 . + 0 ID=Phyra93749;Parent=Phyra93749;rank=1 scaffold_5 . exon 486670 487137 . + . ID=Phyra93749.1;Parent=Phyra93749;constitutive=1;rank=1 scaffold_5 . repeat_region 491001 491021 . ? . description=trf scaffold_5 . repeat_region 493450 493473 . ? . description=trf scaffold_5 . repeat_region 494532 494551 . ? . description=trf scaffold_5 . exon 490022 490088 . + . ID=Phyra73923.2;Parent=Phyra73923;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 ensembl protein_coding_gene 490273 490956 . - . ID=Phyra73924;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000131;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 490273 490956 . - . ID=Phyra73924;Parent=Phyra73924;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 490273 490956 . - 0 ID=Phyra73924;Parent=Phyra73924;rank=1 scaffold_5 . exon 490273 490956 . - . ID=Phyra73924.1;Parent=Phyra73924;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 492665 493663 . - . ID=Phyra73926;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000133;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 492665 493663 . - . ID=Phyra73926;Parent=Phyra73926;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 492665 493663 . - 0 ID=Phyra73926;Parent=Phyra73926;rank=1 scaffold_5 . exon 492665 493663 . - . ID=Phyra73926.1;Parent=Phyra73926;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 495003 496371 . + . ID=Phyra73927;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000134;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 495003 496371 . + . ID=Phyra73927;Parent=Phyra73927;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 495003 495881 . + 0 ID=Phyra73927;Parent=Phyra73927;rank=1 scaffold_5 . exon 495003 495881 . + . ID=Phyra73927.1;Parent=Phyra73927;constitutive=1;rank=1 scaffold_5 . CDS 495964 496062 . + 0 ID=Phyra73927;Parent=Phyra73927;rank=2 scaffold_5 . exon 495964 496062 . + . ID=Phyra73927.2;Parent=Phyra73927;constitutive=1;rank=2 scaffold_5 . CDS 496156 496371 . + 0 ID=Phyra73927;Parent=Phyra73927;rank=3 scaffold_5 . exon 496156 496371 . + . ID=Phyra73927.3;Parent=Phyra73927;constitutive=1;rank=3 scaffold_5 ensembl protein_coding_gene 497595 500339 . + . ID=Phyra73928;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000135;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 497595 500339 . + . ID=Phyra73928;Parent=Phyra73928;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 497595 500339 . + 0 ID=Phyra73928;Parent=Phyra73928;rank=1 scaffold_5 . exon 497595 500339 . + . ID=Phyra73928.1;Parent=Phyra73928;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 491175 492487 . + . ID=Phyra93751;biotype=protein_coding;external_name=C_scaffold_5000042;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 491175 492487 . + . ID=Phyra93751;Parent=Phyra93751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 491175 491285 . + 0 ID=Phyra93751;Parent=Phyra93751;rank=1 scaffold_5 . exon 491175 491285 . + . ID=Phyra93751.1;Parent=Phyra93751;constitutive=1;rank=1 scaffold_5 . CDS 491352 491810 . + 0 ID=Phyra93751;Parent=Phyra93751;rank=2 scaffold_5 . exon 491352 491810 . + . ID=Phyra93751.2;Parent=Phyra93751;constitutive=1;rank=2 scaffold_5 . CDS 491873 491941 . + 0 ID=Phyra93751;Parent=Phyra93751;rank=3 scaffold_5 . exon 491873 491941 . + . ID=Phyra93751.3;Parent=Phyra93751;constitutive=1;rank=3 scaffold_5 . CDS 492012 492088 . + 0 ID=Phyra93751;Parent=Phyra93751;rank=4 scaffold_5 . exon 492012 492088 . + . ID=Phyra93751.4;Parent=Phyra93751;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_5 . CDS 492158 492305 . + 0 ID=Phyra93751;Parent=Phyra93751;rank=5 scaffold_5 . exon 492158 492305 . + . ID=Phyra93751.5;Parent=Phyra93751;constitutive=1;ensembl_phase=2;rank=5 scaffold_5 . CDS 492371 492487 . + 0 ID=Phyra93751;Parent=Phyra93751;rank=6 scaffold_5 . exon 492371 492487 . + . ID=Phyra93751.6;Parent=Phyra93751;constitutive=1;rank=6 scaffold_5 . biological_region 500017 500017 0.999 - . logic_name=eponine scaffold_5 . biological_region 503662 503670 0.999 + . logic_name=eponine scaffold_5 . repeat_region 505920 505947 . ? . description=dust scaffold_5 . repeat_region 507108 507115 . ? . description=dust scaffold_5 ensembl protein_coding_gene 500557 501903 . + . ID=Phyra73929;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000136;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 500557 501903 . + . ID=Phyra73929;Parent=Phyra73929;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 500557 501903 . + 0 ID=Phyra73929;Parent=Phyra73929;rank=1 scaffold_5 . exon 500557 501903 . + . ID=Phyra73929.1;Parent=Phyra73929;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 502035 505157 . - . ID=Phyra73930;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000137;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 502035 505157 . - . ID=Phyra73930;Parent=Phyra73930;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 502035 505157 . - 0 ID=Phyra73930;Parent=Phyra73930;rank=1 scaffold_5 . exon 502035 505157 . - . ID=Phyra73930.1;Parent=Phyra73930;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 505307 507040 . + . ID=Phyra73931;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000138;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 505307 507040 . + . ID=Phyra73931;Parent=Phyra73931;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 505307 507040 . + 0 ID=Phyra73931;Parent=Phyra73931;rank=1 scaffold_5 . exon 505307 507040 . + . ID=Phyra73931.1;Parent=Phyra73931;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 509605 523307 . - . ID=Phyra71155;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000024;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 509605 523307 . - . ID=Phyra71155;Parent=Phyra71155;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 509605 516231 . - 0 ID=Phyra71155;Parent=Phyra71155;rank=4 scaffold_5 . exon 509605 516231 . - . ID=Phyra71155.4;Parent=Phyra71155;constitutive=1;rank=4 scaffold_5 . CDS 516322 519909 . - 0 ID=Phyra71155;Parent=Phyra71155;rank=3 scaffold_5 . exon 516322 519909 . - . ID=Phyra71155.3;Parent=Phyra71155;constitutive=1;rank=3 scaffold_5 . CDS 519955 523010 . - 0 ID=Phyra71155;Parent=Phyra71155;rank=2 scaffold_5 . CDS 523253 523307 . - 0 ID=Phyra71155;Parent=Phyra71155;rank=1 scaffold_5 . repeat_region 520080 520115 . ? . description=trf scaffold_5 . biological_region 524999 525001 0.999 - . logic_name=eponine scaffold_5 . biological_region 525332 525332 0.999 + . logic_name=eponine scaffold_5 . exon 519955 523010 . - . ID=Phyra71155.2;Parent=Phyra71155;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . exon 523253 523307 . - . ID=Phyra71155.1;Parent=Phyra71155;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 524880 526820 . + . ID=Phyra73933;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000140;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 524880 526820 . + . ID=Phyra73933;Parent=Phyra73933;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 524880 525769 . + 0 ID=Phyra73933;Parent=Phyra73933;rank=1 scaffold_5 . exon 524880 525769 . + . ID=Phyra73933.1;Parent=Phyra73933;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 525837 526026 . + 0 ID=Phyra73933;Parent=Phyra73933;rank=2 scaffold_5 . exon 525837 526026 . + . ID=Phyra73933.2;Parent=Phyra73933;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 526088 526349 . + 0 ID=Phyra73933;Parent=Phyra73933;rank=3 scaffold_5 . exon 526088 526349 . + . ID=Phyra73933.3;Parent=Phyra73933;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 526486 526820 . + 0 ID=Phyra73933;Parent=Phyra73933;rank=4 scaffold_5 . exon 526486 526820 . + . ID=Phyra73933.4;Parent=Phyra73933;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 ensembl protein_coding_gene 526953 528479 . - . ID=Phyra73934;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000141;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 526953 528479 . - . ID=Phyra73934;Parent=Phyra73934;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 526953 528479 . - 0 ID=Phyra73934;Parent=Phyra73934;rank=1 scaffold_5 . exon 526953 528479 . - . ID=Phyra73934.1;Parent=Phyra73934;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 530144 531667 . + . ID=Phyra71156;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000025;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 530144 531667 . + . ID=Phyra71156;Parent=Phyra71156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 530144 531667 . + 0 ID=Phyra71156;Parent=Phyra71156;rank=1 scaffold_5 . exon 530144 531667 . + . ID=Phyra71156.1;Parent=Phyra71156;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 529421 529924 . - . ID=Phyra73935;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000142;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 529421 529924 . - . ID=Phyra73935;Parent=Phyra73935;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 529421 529924 . - 0 ID=Phyra73935;Parent=Phyra73935;rank=1 scaffold_5 . exon 529421 529924 . - . ID=Phyra73935.1;Parent=Phyra73935;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 532267 535214 . + . ID=Phyra73937;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000144;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 532267 535214 . + . ID=Phyra73937;Parent=Phyra73937;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 532267 534748 . + 0 ID=Phyra73937;Parent=Phyra73937;rank=1 scaffold_5 . exon 532267 534748 . + . ID=Phyra73937.1;Parent=Phyra73937;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 535147 535214 . + 0 ID=Phyra73937;Parent=Phyra73937;rank=2 scaffold_5 . exon 535147 535214 . + . ID=Phyra73937.2;Parent=Phyra73937;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . biological_region 540972 540972 0.999 - . logic_name=eponine scaffold_5 . repeat_region 544409 544416 . ? . description=dust scaffold_5 ensembl protein_coding_gene 541828 543651 . - . ID=Phyra73938;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000145;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 541828 543651 . - . ID=Phyra73938;Parent=Phyra73938;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 541828 543651 . - 0 ID=Phyra73938;Parent=Phyra73938;rank=1 scaffold_5 . exon 541828 543651 . - . ID=Phyra73938.1;Parent=Phyra73938;constitutive=1;rank=1 scaffold_5 . repeat_region 550140 550163 . ? . description=trf scaffold_5 . repeat_region 550942 550961 . ? . description=trf scaffold_5 ensembl protein_coding_gene 552704 554257 . - . ID=Phyra71157;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000026;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 552704 554257 . - . ID=Phyra71157;Parent=Phyra71157;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 552704 554257 . - 0 ID=Phyra71157;Parent=Phyra71157;rank=1 scaffold_5 . exon 552704 554257 . - . ID=Phyra71157.1;Parent=Phyra71157;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 548821 550613 . + . ID=Phyra73939;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000146;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 548821 550613 . + . ID=Phyra73939;Parent=Phyra73939;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 548821 549135 . + 0 ID=Phyra73939;Parent=Phyra73939;rank=1 scaffold_5 . exon 548821 549135 . + . ID=Phyra73939.1;Parent=Phyra73939;constitutive=1;rank=1 scaffold_5 . CDS 549207 549308 . + 0 ID=Phyra73939;Parent=Phyra73939;rank=2 scaffold_5 . exon 549207 549308 . + . ID=Phyra73939.2;Parent=Phyra73939;constitutive=1;rank=2 scaffold_5 . CDS 549389 549661 . + 0 ID=Phyra73939;Parent=Phyra73939;rank=3 scaffold_5 . exon 549389 549661 . + . ID=Phyra73939.3;Parent=Phyra73939;constitutive=1;rank=3 scaffold_5 . CDS 549748 549861 . + 0 ID=Phyra73939;Parent=Phyra73939;rank=4 scaffold_5 . exon 549748 549861 . + . ID=Phyra73939.4;Parent=Phyra73939;constitutive=1;rank=4 scaffold_5 . CDS 549959 550056 . + 0 ID=Phyra73939;Parent=Phyra73939;rank=5 scaffold_5 . exon 549959 550056 . + . ID=Phyra73939.5;Parent=Phyra73939;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_5 . CDS 550128 550366 . + 0 ID=Phyra73939;Parent=Phyra73939;rank=6 scaffold_5 . exon 550128 550366 . + . ID=Phyra73939.6;Parent=Phyra73939;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_5 . CDS 550427 550491 . + 0 ID=Phyra73939;Parent=Phyra73939;rank=7 scaffold_5 . exon 550427 550491 . + . ID=Phyra73939.7;Parent=Phyra73939;constitutive=1;ensembl_phase=1;rank=7 scaffold_5 . CDS 550560 550613 . + 0 ID=Phyra73939;Parent=Phyra73939;rank=8 scaffold_5 . exon 550560 550613 . + . ID=Phyra73939.8;Parent=Phyra73939;constitutive=1;rank=8 scaffold_5 ensembl protein_coding_gene 550914 551660 . + . ID=Phyra73940;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000147;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 550914 551660 . + . ID=Phyra73940;Parent=Phyra73940;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 550914 551007 . + 0 ID=Phyra73940;Parent=Phyra73940;rank=1 scaffold_5 . exon 550914 551007 . + . ID=Phyra73940.1;Parent=Phyra73940;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 551081 551223 . + 0 ID=Phyra73940;Parent=Phyra73940;rank=2 scaffold_5 . exon 551081 551223 . + . ID=Phyra73940.2;Parent=Phyra73940;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 551298 551418 . + 0 ID=Phyra73940;Parent=Phyra73940;rank=3 scaffold_5 . exon 551298 551418 . + . ID=Phyra73940.3;Parent=Phyra73940;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 551503 551660 . + 0 ID=Phyra73940;Parent=Phyra73940;rank=4 scaffold_5 . exon 551503 551660 . + . ID=Phyra73940.4;Parent=Phyra73940;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 ensembl protein_coding_gene 557872 566146 . + . ID=Phyra73942;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000149;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 557872 566146 . + . ID=Phyra73942;Parent=Phyra73942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 557872 558347 . + 0 ID=Phyra73942;Parent=Phyra73942;rank=1 scaffold_5 . exon 557872 558347 . + . ID=Phyra73942.1;Parent=Phyra73942;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 558459 558665 . + 0 ID=Phyra73942;Parent=Phyra73942;rank=2 scaffold_5 . exon 558459 558665 . + . ID=Phyra73942.2;Parent=Phyra73942;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . CDS 558945 559389 . + 0 ID=Phyra73942;Parent=Phyra73942;rank=3 scaffold_5 . CDS 559505 560056 . + 0 ID=Phyra73942;Parent=Phyra73942;rank=4 scaffold_5 . CDS 560086 560544 . + 0 ID=Phyra73942;Parent=Phyra73942;rank=5 scaffold_5 . CDS 560940 562295 . + 0 ID=Phyra73942;Parent=Phyra73942;rank=6 scaffold_5 . CDS 562370 564058 . + 0 ID=Phyra73942;Parent=Phyra73942;rank=7 scaffold_5 . CDS 564162 564450 . + 0 ID=Phyra73942;Parent=Phyra73942;rank=8 scaffold_5 . CDS 564789 564874 . + 0 ID=Phyra73942;Parent=Phyra73942;rank=9 scaffold_5 . CDS 565025 566146 . + 0 ID=Phyra73942;Parent=Phyra73942;rank=10 scaffold_5 . biological_region 559053 559060 0.999 - . logic_name=eponine scaffold_5 . biological_region 559416 559419 0.999 - . logic_name=eponine scaffold_5 . biological_region 563299 563304 0.999 - . logic_name=eponine scaffold_5 . repeat_region 564100 564149 . ? . description=dust scaffold_5 . biological_region 565661 565663 0.999 - . logic_name=eponine scaffold_5 . biological_region 565698 565701 0.999 - . logic_name=eponine scaffold_5 . biological_region 565777 565778 0.999 + . logic_name=eponine scaffold_5 . biological_region 565803 565805 0.999 + . logic_name=eponine scaffold_5 . biological_region 565919 565922 0.999 - . logic_name=eponine scaffold_5 . biological_region 566487 566493 0.999 - . logic_name=eponine scaffold_5 . biological_region 566858 566863 0.999 + . logic_name=eponine scaffold_5 . biological_region 567253 567257 0.999 + . logic_name=eponine scaffold_5 . biological_region 567359 567364 0.999 - . logic_name=eponine scaffold_5 . biological_region 567378 567382 0.999 - . logic_name=eponine scaffold_5 . biological_region 567719 567724 0.999 - . logic_name=eponine scaffold_5 . exon 558945 559389 . + . ID=Phyra73942.3;Parent=Phyra73942;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . exon 559505 560056 . + . ID=Phyra73942.4;Parent=Phyra73942;constitutive=1;rank=4 scaffold_5 . exon 560086 560544 . + . ID=Phyra73942.5;Parent=Phyra73942;constitutive=1;rank=5 scaffold_5 . exon 560940 562295 . + . ID=Phyra73942.6;Parent=Phyra73942;constitutive=1;rank=6 scaffold_5 . exon 562370 564058 . + . ID=Phyra73942.7;Parent=Phyra73942;constitutive=1;rank=7 scaffold_5 . exon 564162 564450 . + . ID=Phyra73942.8;Parent=Phyra73942;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_5 . exon 564789 564874 . + . ID=Phyra73942.9;Parent=Phyra73942;constitutive=1;ensembl_phase=1;rank=9 scaffold_5 . exon 565025 566146 . + . ID=Phyra73942.10;Parent=Phyra73942;constitutive=1;rank=10 scaffold_5 ensembl protein_coding_gene 566576 567994 . + . ID=Phyra73943;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000150;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 566576 567994 . + . ID=Phyra73943;Parent=Phyra73943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 566576 567994 . + 0 ID=Phyra73943;Parent=Phyra73943;rank=1 scaffold_5 . exon 566576 567994 . + . ID=Phyra73943.1;Parent=Phyra73943;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 576653 577027 . + . ID=Phyra71158;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000027;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 576653 577027 . + . ID=Phyra71158;Parent=Phyra71158;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 576653 576771 . + 0 ID=Phyra71158;Parent=Phyra71158;rank=1 scaffold_5 . exon 576653 576771 . + . ID=Phyra71158.1;Parent=Phyra71158;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 576841 576891 . + 0 ID=Phyra71158;Parent=Phyra71158;rank=2 scaffold_5 . exon 576841 576891 . + . ID=Phyra71158.2;Parent=Phyra71158;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . CDS 576967 577027 . + 0 ID=Phyra71158;Parent=Phyra71158;rank=3 scaffold_5 . exon 576967 577027 . + . ID=Phyra71158.3;Parent=Phyra71158;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 ensembl protein_coding_gene 577257 579332 . - . ID=Phyra71159;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000028;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 577257 579332 . - . ID=Phyra71159;Parent=Phyra71159;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 577257 577322 . - 0 ID=Phyra71159;Parent=Phyra71159;rank=7 scaffold_5 . exon 577257 577322 . - . ID=Phyra71159.7;Parent=Phyra71159;constitutive=1;rank=7 scaffold_5 . CDS 577386 577498 . - 0 ID=Phyra71159;Parent=Phyra71159;rank=6 scaffold_5 . exon 577386 577498 . - . ID=Phyra71159.6;Parent=Phyra71159;constitutive=1;ensembl_phase=1;rank=6 scaffold_5 . CDS 577585 577785 . - 0 ID=Phyra71159;Parent=Phyra71159;rank=5 scaffold_5 . exon 577585 577785 . - . ID=Phyra71159.5;Parent=Phyra71159;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 577844 578770 . - 0 ID=Phyra71159;Parent=Phyra71159;rank=4 scaffold_5 . exon 577844 578770 . - . ID=Phyra71159.4;Parent=Phyra71159;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 578845 578941 . - 0 ID=Phyra71159;Parent=Phyra71159;rank=3 scaffold_5 . CDS 579014 579091 . - 0 ID=Phyra71159;Parent=Phyra71159;rank=2 scaffold_5 . CDS 579162 579332 . - 0 ID=Phyra71159;Parent=Phyra71159;rank=1 scaffold_5 ensembl protein_coding_gene 568711 572690 . + . ID=Phyra73944;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000151;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 568711 572690 . + . ID=Phyra73944;Parent=Phyra73944;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 568711 568829 . + 0 ID=Phyra73944;Parent=Phyra73944;rank=1 scaffold_5 . exon 568711 568829 . + . ID=Phyra73944.1;Parent=Phyra73944;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 569031 569161 . + 0 ID=Phyra73944;Parent=Phyra73944;rank=2 scaffold_5 . exon 569031 569161 . + . ID=Phyra73944.2;Parent=Phyra73944;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 569595 569669 . + 0 ID=Phyra73944;Parent=Phyra73944;rank=3 scaffold_5 . exon 569595 569669 . + . ID=Phyra73944.3;Parent=Phyra73944;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 569928 571233 . + 0 ID=Phyra73944;Parent=Phyra73944;rank=4 scaffold_5 . exon 569928 571233 . + . ID=Phyra73944.4;Parent=Phyra73944;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_5 . CDS 571348 571494 . + 0 ID=Phyra73944;Parent=Phyra73944;rank=5 scaffold_5 . exon 571348 571494 . + . ID=Phyra73944.5;Parent=Phyra73944;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_5 . CDS 571567 571999 . + 0 ID=Phyra73944;Parent=Phyra73944;rank=6 scaffold_5 . exon 571567 571999 . + . ID=Phyra73944.6;Parent=Phyra73944;constitutive=1;ensembl_phase=2;rank=6 scaffold_5 . CDS 572292 572690 . + 0 ID=Phyra73944;Parent=Phyra73944;rank=7 scaffold_5 . exon 572292 572690 . + . ID=Phyra73944.7;Parent=Phyra73944;constitutive=1;rank=7 scaffold_5 ensembl protein_coding_gene 573801 575505 . - . ID=Phyra73945;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000152;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 573801 575505 . - . ID=Phyra73945;Parent=Phyra73945;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 573801 573835 . - 0 ID=Phyra73945;Parent=Phyra73945;rank=4 scaffold_5 . exon 573801 573835 . - . ID=Phyra73945.4;Parent=Phyra73945;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 573919 574128 . - 0 ID=Phyra73945;Parent=Phyra73945;rank=3 scaffold_5 . exon 573919 574128 . - . ID=Phyra73945.3;Parent=Phyra73945;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 574334 574571 . - 0 ID=Phyra73945;Parent=Phyra73945;rank=2 scaffold_5 . exon 574334 574571 . - . ID=Phyra73945.2;Parent=Phyra73945;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 574597 575505 . - 0 ID=Phyra73945;Parent=Phyra73945;rank=1 scaffold_5 . exon 574597 575505 . - . ID=Phyra73945.1;Parent=Phyra73945;constitutive=1;rank=1 scaffold_5 . biological_region 578495 578502 0.999 - . logic_name=eponine scaffold_5 . biological_region 578625 578628 0.999 - . logic_name=eponine scaffold_5 . biological_region 580539 580542 0.999 - . logic_name=eponine scaffold_5 . biological_region 584835 584835 0.999 + . logic_name=eponine scaffold_5 . biological_region 584835 584839 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 584807 585377 . + . ID=Phyra49920;biotype=protein_coding;external_name=gwEuk.5.140.1;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 584807 585377 . + . ID=Phyra49920;Parent=Phyra49920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 584807 585279 . + 0 ID=Phyra49920;Parent=Phyra49920;rank=1 scaffold_5 . exon 584807 585279 . + . ID=Phyra49920.1;Parent=Phyra49920;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 585344 585377 . + 0 ID=Phyra49920;Parent=Phyra49920;rank=2 scaffold_5 . exon 585344 585377 . + . ID=Phyra49920.2;Parent=Phyra49920;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . exon 578845 578941 . - . ID=Phyra71159.3;Parent=Phyra71159;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . exon 579014 579091 . - . ID=Phyra71159.2;Parent=Phyra71159;constitutive=1;rank=2 scaffold_5 . exon 579162 579332 . - . ID=Phyra71159.1;Parent=Phyra71159;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 580327 580908 . + . ID=Phyra73948;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000155;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 580327 580908 . + . ID=Phyra73948;Parent=Phyra73948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 580327 580908 . + 0 ID=Phyra73948;Parent=Phyra73948;rank=1 scaffold_5 . exon 580327 580908 . + . ID=Phyra73948.1;Parent=Phyra73948;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 583648 584469 . - . ID=Phyra73949;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000156;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 583648 584469 . - . ID=Phyra73949;Parent=Phyra73949;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 583648 583656 . - 0 ID=Phyra73949;Parent=Phyra73949;rank=2 scaffold_5 . exon 583648 583656 . - . ID=Phyra73949.2;Parent=Phyra73949;constitutive=1;rank=2 scaffold_5 . CDS 583763 584467 . - 0 ID=Phyra73949;Parent=Phyra73949;rank=1 scaffold_5 . exon 583763 584469 . - . ID=Phyra73949.1;Parent=Phyra73949;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 592659 595179 . - . ID=Phyra73951;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000158;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 592659 595179 . - . ID=Phyra73951;Parent=Phyra73951;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 592659 593416 . - 0 ID=Phyra73951;Parent=Phyra73951;rank=4 scaffold_5 . exon 592659 593416 . - . ID=Phyra73951.4;Parent=Phyra73951;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 593482 593603 . - 0 ID=Phyra73951;Parent=Phyra73951;rank=3 scaffold_5 . exon 593482 593603 . - . ID=Phyra73951.3;Parent=Phyra73951;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 593685 594188 . - 0 ID=Phyra73951;Parent=Phyra73951;rank=2 scaffold_5 . exon 593685 594188 . - . ID=Phyra73951.2;Parent=Phyra73951;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . CDS 594275 595179 . - 0 ID=Phyra73951;Parent=Phyra73951;rank=1 scaffold_5 . exon 594275 595179 . - . ID=Phyra73951.1;Parent=Phyra73951;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 595445 596929 . + . ID=Phyra73952;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000159;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 595445 596929 . + . ID=Phyra73952;Parent=Phyra73952;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 595445 596929 . + 0 ID=Phyra73952;Parent=Phyra73952;rank=1 scaffold_5 . exon 595445 596929 . + . ID=Phyra73952.1;Parent=Phyra73952;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 597186 598253 . - . ID=Phyra73953;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000160;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 597186 598253 . - . ID=Phyra73953;Parent=Phyra73953;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 597186 597786 . - 0 ID=Phyra73953;Parent=Phyra73953;rank=3 scaffold_5 . exon 597186 597786 . - . ID=Phyra73953.3;Parent=Phyra73953;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 597861 598002 . - 0 ID=Phyra73953;Parent=Phyra73953;rank=2 scaffold_5 . exon 597861 598002 . - . ID=Phyra73953.2;Parent=Phyra73953;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_5 . CDS 598070 598253 . - 0 ID=Phyra73953;Parent=Phyra73953;rank=1 scaffold_5 . exon 598070 598253 . - . ID=Phyra73953.1;Parent=Phyra73953;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 598365 603198 . + . ID=Phyra73954;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000161;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 598365 603198 . + . ID=Phyra73954;Parent=Phyra73954;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 598365 598767 . + 0 ID=Phyra73954;Parent=Phyra73954;rank=1 scaffold_5 . exon 598365 598767 . + . ID=Phyra73954.1;Parent=Phyra73954;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 598844 600813 . + 0 ID=Phyra73954;Parent=Phyra73954;rank=2 scaffold_5 . CDS 600880 601167 . + 0 ID=Phyra73954;Parent=Phyra73954;rank=3 scaffold_5 . CDS 601228 601957 . + 0 ID=Phyra73954;Parent=Phyra73954;rank=4 scaffold_5 . CDS 602058 602153 . + 0 ID=Phyra73954;Parent=Phyra73954;rank=5 scaffold_5 . CDS 602516 602699 . + 0 ID=Phyra73954;Parent=Phyra73954;rank=6 scaffold_5 . CDS 602766 602848 . + 0 ID=Phyra73954;Parent=Phyra73954;rank=7 scaffold_5 . CDS 602910 602995 . + 0 ID=Phyra73954;Parent=Phyra73954;rank=8 scaffold_5 . CDS 603052 603198 . + 0 ID=Phyra73954;Parent=Phyra73954;rank=9 scaffold_5 . biological_region 599119 599121 0.999 + . logic_name=eponine scaffold_5 . biological_region 601843 601845 0.999 - . logic_name=eponine scaffold_5 . biological_region 603646 603646 0.999 + . logic_name=eponine scaffold_5 . biological_region 604130 604134 0.999 - . logic_name=eponine scaffold_5 . biological_region 607986 607989 0.999 + . logic_name=eponine scaffold_5 . biological_region 608314 608316 0.999 - . logic_name=eponine scaffold_5 . biological_region 608332 608337 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 603545 604213 . - . ID=Phyra71161;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000030;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 603545 604213 . - . ID=Phyra71161;Parent=Phyra71161;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 603545 604213 . - 0 ID=Phyra71161;Parent=Phyra71161;rank=1 scaffold_5 . exon 603545 604213 . - . ID=Phyra71161.1;Parent=Phyra71161;constitutive=1;rank=1 scaffold_5 . exon 598844 600813 . + . ID=Phyra73954.2;Parent=Phyra73954;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . exon 600880 601167 . + . ID=Phyra73954.3;Parent=Phyra73954;constitutive=1;rank=3 scaffold_5 . exon 601228 601957 . + . ID=Phyra73954.4;Parent=Phyra73954;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . exon 602058 602153 . + . ID=Phyra73954.5;Parent=Phyra73954;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_5 . exon 602516 602699 . + . ID=Phyra73954.6;Parent=Phyra73954;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_5 . exon 602766 602848 . + . ID=Phyra73954.7;Parent=Phyra73954;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_5 . exon 602910 602995 . + . ID=Phyra73954.8;Parent=Phyra73954;constitutive=1;ensembl_phase=1;rank=8 scaffold_5 . exon 603052 603198 . + . ID=Phyra73954.9;Parent=Phyra73954;constitutive=1;rank=9 scaffold_5 ensembl protein_coding_gene 604458 605807 . - . ID=Phyra73956;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000163;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 604458 605807 . - . ID=Phyra73956;Parent=Phyra73956;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 604458 604554 . - 0 ID=Phyra73956;Parent=Phyra73956;rank=3 scaffold_5 . exon 604458 604554 . - . ID=Phyra73956.3;Parent=Phyra73956;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 604623 604810 . - 0 ID=Phyra73956;Parent=Phyra73956;rank=2 scaffold_5 . exon 604623 604810 . - . ID=Phyra73956.2;Parent=Phyra73956;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 604884 605807 . - 0 ID=Phyra73956;Parent=Phyra73956;rank=1 scaffold_5 . exon 604884 605807 . - . ID=Phyra73956.1;Parent=Phyra73956;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 605989 607611 . + . ID=Phyra73957;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000164;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 605989 607611 . + . ID=Phyra73957;Parent=Phyra73957;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 605989 607611 . + 0 ID=Phyra73957;Parent=Phyra73957;rank=1 scaffold_5 . exon 605989 607611 . + . ID=Phyra73957.1;Parent=Phyra73957;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 607697 608937 . - . ID=Phyra73958;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000165;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 607697 608937 . - . ID=Phyra73958;Parent=Phyra73958;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 607697 608608 . - 0 ID=Phyra73958;Parent=Phyra73958;rank=2 scaffold_5 . exon 607697 608608 . - . ID=Phyra73958.2;Parent=Phyra73958;constitutive=1;rank=2 scaffold_5 . CDS 608668 608937 . - 0 ID=Phyra73958;Parent=Phyra73958;rank=1 scaffold_5 . repeat_region 609152 609160 . ? . description=dust scaffold_5 . repeat_region 613295 613431 . ? . description=trf scaffold_5 . repeat_region 613298 613431 . ? . description=trf scaffold_5 . exon 608668 608937 . - . ID=Phyra73958.1;Parent=Phyra73958;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 611978 613453 . + . ID=Phyra73959;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000166;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 611978 613453 . + . ID=Phyra73959;Parent=Phyra73959;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 611978 613453 . + 0 ID=Phyra73959;Parent=Phyra73959;rank=1 scaffold_5 . exon 611978 613453 . + . ID=Phyra73959.1;Parent=Phyra73959;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 614453 616270 . + . ID=Phyra73960;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000167;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 614453 616270 . + . ID=Phyra73960;Parent=Phyra73960;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 614453 616270 . + 0 ID=Phyra73960;Parent=Phyra73960;rank=1 scaffold_5 . exon 614453 616270 . + . ID=Phyra73960.1;Parent=Phyra73960;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 616610 617317 . - . ID=Phyra93759;biotype=protein_coding;external_name=C_scaffold_5000050;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 616610 617317 . - . ID=Phyra93759;Parent=Phyra93759;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 616610 617317 . - 0 ID=Phyra93759;Parent=Phyra93759;rank=1 scaffold_5 . exon 616610 617317 . - . ID=Phyra93759.1;Parent=Phyra93759;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 617717 619089 . - . ID=Phyra93761;biotype=protein_coding;external_name=C_scaffold_5000052;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 617717 619089 . - . ID=Phyra93761;Parent=Phyra93761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 617717 618380 . - 0 ID=Phyra93761;Parent=Phyra93761;rank=2 scaffold_5 . exon 617717 618380 . - . ID=Phyra93761.2;Parent=Phyra93761;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 618602 619089 . - 0 ID=Phyra93761;Parent=Phyra93761;rank=1 scaffold_5 ensembl protein_coding_gene 620077 620739 . + . ID=Phyra73963;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000170;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 620077 620739 . + . ID=Phyra73963;Parent=Phyra73963;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 620077 620739 . + 0 ID=Phyra73963;Parent=Phyra73963;rank=1 scaffold_5 . exon 620077 620739 . + . ID=Phyra73963.1;Parent=Phyra73963;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 620828 621418 . - . ID=Phyra73964;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000171;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 620828 621418 . - . ID=Phyra73964;Parent=Phyra73964;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 620828 621418 . - 0 ID=Phyra73964;Parent=Phyra73964;rank=1 scaffold_5 . exon 620828 621418 . - . ID=Phyra73964.1;Parent=Phyra73964;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 621572 622195 . - . ID=Phyra73965;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000172;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 621572 622195 . - . ID=Phyra73965;Parent=Phyra73965;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 621572 622195 . - 0 ID=Phyra73965;Parent=Phyra73965;rank=1 scaffold_5 . exon 621572 622195 . - . ID=Phyra73965.1;Parent=Phyra73965;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 622790 624367 . - . ID=Phyra73966;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000173;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 622790 624367 . - . ID=Phyra73966;Parent=Phyra73966;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 622790 624367 . - 0 ID=Phyra73966;Parent=Phyra73966;rank=1 scaffold_5 . exon 622790 624367 . - . ID=Phyra73966.1;Parent=Phyra73966;constitutive=1;rank=1 scaffold_5 . exon 618602 619089 . - . ID=Phyra93761.1;Parent=Phyra93761;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . biological_region 634326 634329 0.999 - . logic_name=eponine scaffold_5 . biological_region 634488 634489 0.999 + . logic_name=eponine scaffold_5 . biological_region 637365 637368 0.999 - . logic_name=eponine scaffold_5 . biological_region 637944 637945 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 631483 635191 . - . ID=Phyra73967;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000174;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 631483 635191 . - . ID=Phyra73967;Parent=Phyra73967;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 631483 631497 . - 0 ID=Phyra73967;Parent=Phyra73967;rank=8 scaffold_5 . exon 631483 631497 . - . ID=Phyra73967.8;Parent=Phyra73967;constitutive=1;rank=8 scaffold_5 . CDS 631575 631727 . - 0 ID=Phyra73967;Parent=Phyra73967;rank=7 scaffold_5 . exon 631575 631727 . - . ID=Phyra73967.7;Parent=Phyra73967;constitutive=1;rank=7 scaffold_5 . CDS 631911 633197 . - 0 ID=Phyra73967;Parent=Phyra73967;rank=6 scaffold_5 . exon 631911 633197 . - . ID=Phyra73967.6;Parent=Phyra73967;constitutive=1;rank=6 scaffold_5 . CDS 633907 634068 . - 0 ID=Phyra73967;Parent=Phyra73967;rank=5 scaffold_5 . exon 633907 634068 . - . ID=Phyra73967.5;Parent=Phyra73967;constitutive=1;rank=5 scaffold_5 . CDS 634165 634442 . - 0 ID=Phyra73967;Parent=Phyra73967;rank=4 scaffold_5 . exon 634165 634442 . - . ID=Phyra73967.4;Parent=Phyra73967;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 634497 634701 . - 0 ID=Phyra73967;Parent=Phyra73967;rank=3 scaffold_5 . exon 634497 634701 . - . ID=Phyra73967.3;Parent=Phyra73967;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 634783 634917 . - 0 ID=Phyra73967;Parent=Phyra73967;rank=2 scaffold_5 . exon 634783 634917 . - . ID=Phyra73967.2;Parent=Phyra73967;constitutive=1;rank=2 scaffold_5 . CDS 635006 635191 . - 0 ID=Phyra73967;Parent=Phyra73967;rank=1 scaffold_5 . exon 635006 635191 . - . ID=Phyra73967.1;Parent=Phyra73967;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 635518 636627 . + . ID=Phyra73968;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000175;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 635518 636627 . + . ID=Phyra73968;Parent=Phyra73968;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 635518 636627 . + 0 ID=Phyra73968;Parent=Phyra73968;rank=1 scaffold_5 . exon 635518 636627 . + . ID=Phyra73968.1;Parent=Phyra73968;constitutive=1;rank=1 scaffold_5 . repeat_region 642181 642365 . ? . description=trf scaffold_5 . repeat_region 642181 642373 . ? . description=trf scaffold_5 . repeat_region 642181 642373 . ? . description=trf scaffold_5 . repeat_region 642181 642408 . ? . description=trf scaffold_5 . repeat_region 642612 642755 . ? . description=trf scaffold_5 . repeat_region 642612 642774 . ? . description=trf scaffold_5 . repeat_region 642612 642774 . ? . description=trf scaffold_5 . repeat_region 642612 642793 . ? . description=trf scaffold_5 . repeat_region 644598 644652 . ? . description=trf scaffold_5 . repeat_region 644609 644725 . ? . description=trf scaffold_5 . repeat_region 644649 644779 . ? . description=trf scaffold_5 . repeat_region 644664 644779 . ? . description=trf scaffold_5 . repeat_region 644691 644779 . ? . description=trf scaffold_5 . repeat_region 644703 644786 . ? . description=trf scaffold_5 . repeat_region 646470 646589 . ? . description=trf scaffold_5 ensembl protein_coding_gene 638448 641165 . + . ID=Phyra73969;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000176;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 638448 641165 . + . ID=Phyra73969;Parent=Phyra73969;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 638448 638606 . + 0 ID=Phyra73969;Parent=Phyra73969;rank=1 scaffold_5 . exon 638448 638606 . + . ID=Phyra73969.1;Parent=Phyra73969;constitutive=1;rank=1 scaffold_5 . CDS 638676 639227 . + 0 ID=Phyra73969;Parent=Phyra73969;rank=2 scaffold_5 . exon 638676 639227 . + . ID=Phyra73969.2;Parent=Phyra73969;constitutive=1;rank=2 scaffold_5 . CDS 639295 639521 . + 0 ID=Phyra73969;Parent=Phyra73969;rank=3 scaffold_5 . exon 639295 639521 . + . ID=Phyra73969.3;Parent=Phyra73969;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_5 . CDS 639570 640608 . + 0 ID=Phyra73969;Parent=Phyra73969;rank=4 scaffold_5 . exon 639570 640608 . + . ID=Phyra73969.4;Parent=Phyra73969;constitutive=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 640633 640719 . + 0 ID=Phyra73969;Parent=Phyra73969;rank=5 scaffold_5 . exon 640633 640719 . + . ID=Phyra73969.5;Parent=Phyra73969;constitutive=1;rank=5 scaffold_5 . CDS 640804 641018 . + 0 ID=Phyra73969;Parent=Phyra73969;rank=6 scaffold_5 . exon 640804 641018 . + . ID=Phyra73969.6;Parent=Phyra73969;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_5 . CDS 641087 641165 . + 0 ID=Phyra73969;Parent=Phyra73969;rank=7 scaffold_5 . exon 641087 641165 . + . ID=Phyra73969.7;Parent=Phyra73969;constitutive=1;ensembl_phase=2;rank=7 scaffold_5 ensembl protein_coding_gene 641591 643564 . - . ID=Phyra73970;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000177;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 641591 643564 . - . ID=Phyra73970;Parent=Phyra73970;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 641591 643564 . - 0 ID=Phyra73970;Parent=Phyra73970;rank=1 scaffold_5 . exon 641591 643564 . - . ID=Phyra73970.1;Parent=Phyra73970;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 644150 645550 . - . ID=Phyra73971;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000178;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 644150 645550 . - . ID=Phyra73971;Parent=Phyra73971;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 644150 645550 . - 0 ID=Phyra73971;Parent=Phyra73971;rank=1 scaffold_5 . exon 644150 645550 . - . ID=Phyra73971.1;Parent=Phyra73971;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 646336 647574 . - . ID=Phyra73972;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000179;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 646336 647574 . - . ID=Phyra73972;Parent=Phyra73972;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 646336 647574 . - 0 ID=Phyra73972;Parent=Phyra73972;rank=1 scaffold_5 . exon 646336 647574 . - . ID=Phyra73972.1;Parent=Phyra73972;constitutive=1;rank=1 scaffold_5 . repeat_region 649175 649183 . ? . description=dust scaffold_5 . biological_region 649554 649558 0.999 + . logic_name=eponine scaffold_5 . biological_region 654107 654108 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 649327 650915 . - . ID=Phyra71163;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000032;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 649327 650915 . - . ID=Phyra71163;Parent=Phyra71163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 649327 650591 . - 0 ID=Phyra71163;Parent=Phyra71163;rank=3 scaffold_5 . exon 649327 650591 . - . ID=Phyra71163.3;Parent=Phyra71163;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 650662 650802 . - 0 ID=Phyra71163;Parent=Phyra71163;rank=2 scaffold_5 . exon 650662 650802 . - . ID=Phyra71163.2;Parent=Phyra71163;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 650876 650915 . - 0 ID=Phyra71163;Parent=Phyra71163;rank=1 scaffold_5 . exon 650876 650915 . - . ID=Phyra71163.1;Parent=Phyra71163;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 648384 648713 . - . ID=Phyra73973;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000180;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 648384 648713 . - . ID=Phyra73973;Parent=Phyra73973;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 648384 648713 . - 0 ID=Phyra73973;Parent=Phyra73973;rank=1 scaffold_5 . exon 648384 648713 . - . ID=Phyra73973.1;Parent=Phyra73973;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 651585 653715 . - . ID=Phyra73975;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000182;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 651585 653715 . - . ID=Phyra73975;Parent=Phyra73975;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 651585 651734 . - 0 ID=Phyra73975;Parent=Phyra73975;rank=12 scaffold_5 . exon 651585 651734 . - . ID=Phyra73975.12;Parent=Phyra73975;constitutive=1;rank=12 scaffold_5 . CDS 651793 651859 . - 0 ID=Phyra73975;Parent=Phyra73975;rank=11 scaffold_5 . exon 651793 651859 . - . ID=Phyra73975.11;Parent=Phyra73975;constitutive=1;ensembl_phase=2;rank=11 scaffold_5 . CDS 651937 652016 . - 0 ID=Phyra73975;Parent=Phyra73975;rank=10 scaffold_5 . exon 651937 652016 . - . ID=Phyra73975.10;Parent=Phyra73975;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_5 . CDS 652084 652271 . - 0 ID=Phyra73975;Parent=Phyra73975;rank=9 scaffold_5 . exon 652084 652271 . - . ID=Phyra73975.9;Parent=Phyra73975;constitutive=1;ensembl_phase=1;rank=9 scaffold_5 . CDS 652351 652455 . - 0 ID=Phyra73975;Parent=Phyra73975;rank=8 scaffold_5 . exon 652351 652455 . - . ID=Phyra73975.8;Parent=Phyra73975;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_5 . CDS 652544 652676 . - 0 ID=Phyra73975;Parent=Phyra73975;rank=7 scaffold_5 . exon 652544 652676 . - . ID=Phyra73975.7;Parent=Phyra73975;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_5 . CDS 652737 652863 . - 0 ID=Phyra73975;Parent=Phyra73975;rank=6 scaffold_5 . exon 652737 652863 . - . ID=Phyra73975.6;Parent=Phyra73975;constitutive=1;ensembl_phase=2;rank=6 scaffold_5 . CDS 652950 653038 . - 0 ID=Phyra73975;Parent=Phyra73975;rank=5 scaffold_5 . exon 652950 653038 . - . ID=Phyra73975.5;Parent=Phyra73975;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_5 . CDS 653114 653192 . - 0 ID=Phyra73975;Parent=Phyra73975;rank=4 scaffold_5 . exon 653114 653192 . - . ID=Phyra73975.4;Parent=Phyra73975;constitutive=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 653266 653516 . - 0 ID=Phyra73975;Parent=Phyra73975;rank=3 scaffold_5 . exon 653266 653516 . - . ID=Phyra73975.3;Parent=Phyra73975;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_5 . CDS 653606 653683 . - 0 ID=Phyra73975;Parent=Phyra73975;rank=2 scaffold_5 . exon 653606 653683 . - . ID=Phyra73975.2;Parent=Phyra73975;constitutive=1;rank=2 scaffold_5 . CDS 653707 653715 . - 0 ID=Phyra73975;Parent=Phyra73975;rank=1 scaffold_5 . exon 653707 653715 . - . ID=Phyra73975.1;Parent=Phyra73975;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 654172 655473 . + . ID=Phyra73976;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000183;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 654172 655473 . + . ID=Phyra73976;Parent=Phyra73976;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 654172 654217 . + 0 ID=Phyra73976;Parent=Phyra73976;rank=1 scaffold_5 . exon 654172 654217 . + . ID=Phyra73976.1;Parent=Phyra73976;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 654289 654357 . + 0 ID=Phyra73976;Parent=Phyra73976;rank=2 scaffold_5 . exon 654289 654357 . + . ID=Phyra73976.2;Parent=Phyra73976;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 654460 654515 . + 0 ID=Phyra73976;Parent=Phyra73976;rank=3 scaffold_5 . exon 654460 654515 . + . ID=Phyra73976.3;Parent=Phyra73976;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 654589 654747 . + 0 ID=Phyra73976;Parent=Phyra73976;rank=4 scaffold_5 . exon 654589 654747 . + . ID=Phyra73976.4;Parent=Phyra73976;constitutive=1;rank=4 scaffold_5 . CDS 654867 655004 . + 0 ID=Phyra73976;Parent=Phyra73976;rank=5 scaffold_5 . exon 654867 655004 . + . ID=Phyra73976.5;Parent=Phyra73976;constitutive=1;rank=5 scaffold_5 . CDS 655033 655072 . + 0 ID=Phyra73976;Parent=Phyra73976;rank=6 scaffold_5 . exon 655033 655072 . + . ID=Phyra73976.6;Parent=Phyra73976;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_5 . CDS 655159 655269 . + 0 ID=Phyra73976;Parent=Phyra73976;rank=7 scaffold_5 . exon 655159 655269 . + . ID=Phyra73976.7;Parent=Phyra73976;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_5 . CDS 655337 655473 . + 0 ID=Phyra73976;Parent=Phyra73976;rank=8 scaffold_5 . exon 655337 655473 . + . ID=Phyra73976.8;Parent=Phyra73976;constitutive=1;ensembl_phase=1;rank=8 scaffold_5 ensembl protein_coding_gene 657752 659031 . - . ID=Phyra73977;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000184;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 657752 659031 . - . ID=Phyra73977;Parent=Phyra73977;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 657752 657759 . - 0 ID=Phyra73977;Parent=Phyra73977;rank=2 scaffold_5 . exon 657752 657759 . - . ID=Phyra73977.2;Parent=Phyra73977;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 657810 659031 . - 0 ID=Phyra73977;Parent=Phyra73977;rank=1 scaffold_5 . exon 657810 659031 . - . ID=Phyra73977.1;Parent=Phyra73977;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . repeat_region 658955 658980 . ? . description=trf scaffold_5 . repeat_region 660094 660122 . ? . description=trf scaffold_5 ensembl protein_coding_gene 659161 659854 . + . ID=Phyra71164;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000033;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 659161 659854 . + . ID=Phyra71164;Parent=Phyra71164;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 659161 659229 . + 0 ID=Phyra71164;Parent=Phyra71164;rank=1 scaffold_5 . exon 659161 659229 . + . ID=Phyra71164.1;Parent=Phyra71164;constitutive=1;rank=1 scaffold_5 . CDS 659307 659395 . + 0 ID=Phyra71164;Parent=Phyra71164;rank=2 scaffold_5 . exon 659307 659395 . + . ID=Phyra71164.2;Parent=Phyra71164;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 659466 659581 . + 0 ID=Phyra71164;Parent=Phyra71164;rank=3 scaffold_5 . exon 659466 659581 . + . ID=Phyra71164.3;Parent=Phyra71164;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 659640 659854 . + 0 ID=Phyra71164;Parent=Phyra71164;rank=4 scaffold_5 . exon 659640 659854 . + . ID=Phyra71164.4;Parent=Phyra71164;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 ensembl protein_coding_gene 659999 662885 . - . ID=Phyra73979;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000186;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 659999 662885 . - . ID=Phyra73979;Parent=Phyra73979;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 659999 660345 . - 0 ID=Phyra73979;Parent=Phyra73979;rank=5 scaffold_5 . exon 659999 660345 . - . ID=Phyra73979.5;Parent=Phyra73979;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 660420 660476 . - 0 ID=Phyra73979;Parent=Phyra73979;rank=4 scaffold_5 . exon 660420 660476 . - . ID=Phyra73979.4;Parent=Phyra73979;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 660682 660698 . - 0 ID=Phyra73979;Parent=Phyra73979;rank=3 scaffold_5 . exon 660682 660698 . - . ID=Phyra73979.3;Parent=Phyra73979;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 660971 661033 . - 0 ID=Phyra73979;Parent=Phyra73979;rank=2 scaffold_5 . exon 660971 661033 . - . ID=Phyra73979.2;Parent=Phyra73979;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . CDS 661108 662885 . - 0 ID=Phyra73979;Parent=Phyra73979;rank=1 scaffold_5 . exon 661108 662885 . - . ID=Phyra73979.1;Parent=Phyra73979;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 666855 667689 . - . ID=Phyra73980;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000187;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 666855 667689 . - . ID=Phyra73980;Parent=Phyra73980;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 666855 666877 . - 0 ID=Phyra73980;Parent=Phyra73980;rank=4 scaffold_5 . exon 666855 666877 . - . ID=Phyra73980.4;Parent=Phyra73980;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 666898 667075 . - 0 ID=Phyra73980;Parent=Phyra73980;rank=3 scaffold_5 . exon 666898 667075 . - . ID=Phyra73980.3;Parent=Phyra73980;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 667136 667330 . - 0 ID=Phyra73980;Parent=Phyra73980;rank=2 scaffold_5 . exon 667136 667330 . - . ID=Phyra73980.2;Parent=Phyra73980;constitutive=1;rank=2 scaffold_5 . CDS 667417 667689 . - 0 ID=Phyra73980;Parent=Phyra73980;rank=1 scaffold_5 . exon 667417 667689 . - . ID=Phyra73980.1;Parent=Phyra73980;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 667786 668974 . + . ID=Phyra73981;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000188;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 667786 668974 . + . ID=Phyra73981;Parent=Phyra73981;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 667786 667807 . + 0 ID=Phyra73981;Parent=Phyra73981;rank=1 scaffold_5 . exon 667786 667807 . + . ID=Phyra73981.1;Parent=Phyra73981;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 667939 667994 . + 0 ID=Phyra73981;Parent=Phyra73981;rank=2 scaffold_5 . exon 667939 667994 . + . ID=Phyra73981.2;Parent=Phyra73981;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 668057 668169 . + 0 ID=Phyra73981;Parent=Phyra73981;rank=3 scaffold_5 . exon 668057 668169 . + . ID=Phyra73981.3;Parent=Phyra73981;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_5 . CDS 668252 668303 . + 0 ID=Phyra73981;Parent=Phyra73981;rank=4 scaffold_5 . CDS 668376 668441 . + 0 ID=Phyra73981;Parent=Phyra73981;rank=5 scaffold_5 . CDS 668505 668527 . + 0 ID=Phyra73981;Parent=Phyra73981;rank=6 scaffold_5 . CDS 668597 668711 . + 0 ID=Phyra73981;Parent=Phyra73981;rank=7 scaffold_5 . CDS 668744 668974 . + 0 ID=Phyra73981;Parent=Phyra73981;rank=8 scaffold_5 . biological_region 676519 676519 0.999 - . logic_name=eponine scaffold_5 . repeat_region 677863 677878 . ? . description=dust scaffold_5 . exon 668252 668303 . + . ID=Phyra73981.4;Parent=Phyra73981;constitutive=1;ensembl_phase=2;rank=4 scaffold_5 . exon 668376 668441 . + . ID=Phyra73981.5;Parent=Phyra73981;constitutive=1;rank=5 scaffold_5 . exon 668505 668527 . + . ID=Phyra73981.6;Parent=Phyra73981;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_5 . exon 668597 668711 . + . ID=Phyra73981.7;Parent=Phyra73981;constitutive=1;ensembl_phase=2;rank=7 scaffold_5 . exon 668744 668974 . + . ID=Phyra73981.8;Parent=Phyra73981;constitutive=1;rank=8 scaffold_5 ensembl protein_coding_gene 669210 670468 . + . ID=Phyra73982;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000189;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 669210 670468 . + . ID=Phyra73982;Parent=Phyra73982;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 669210 669462 . + 0 ID=Phyra73982;Parent=Phyra73982;rank=1 scaffold_5 . exon 669210 669462 . + . ID=Phyra73982.1;Parent=Phyra73982;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 669535 669580 . + 0 ID=Phyra73982;Parent=Phyra73982;rank=2 scaffold_5 . exon 669535 669580 . + . ID=Phyra73982.2;Parent=Phyra73982;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_5 . CDS 669658 669741 . + 0 ID=Phyra73982;Parent=Phyra73982;rank=3 scaffold_5 . exon 669658 669741 . + . ID=Phyra73982.3;Parent=Phyra73982;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_5 . CDS 669818 669867 . + 0 ID=Phyra73982;Parent=Phyra73982;rank=4 scaffold_5 . exon 669818 669867 . + . ID=Phyra73982.4;Parent=Phyra73982;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 669922 669989 . + 0 ID=Phyra73982;Parent=Phyra73982;rank=5 scaffold_5 . exon 669922 669989 . + . ID=Phyra73982.5;Parent=Phyra73982;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 670065 670130 . + 0 ID=Phyra73982;Parent=Phyra73982;rank=6 scaffold_5 . exon 670065 670130 . + . ID=Phyra73982.6;Parent=Phyra73982;constitutive=1;rank=6 scaffold_5 . CDS 670197 670289 . + 0 ID=Phyra73982;Parent=Phyra73982;rank=7 scaffold_5 . exon 670197 670289 . + . ID=Phyra73982.7;Parent=Phyra73982;constitutive=1;rank=7 scaffold_5 . CDS 670365 670415 . + 0 ID=Phyra73982;Parent=Phyra73982;rank=8 scaffold_5 . exon 670365 670415 . + . ID=Phyra73982.8;Parent=Phyra73982;constitutive=1;rank=8 scaffold_5 . CDS 670457 670468 . + 0 ID=Phyra73982;Parent=Phyra73982;rank=9 scaffold_5 . exon 670457 670468 . + . ID=Phyra73982.9;Parent=Phyra73982;constitutive=1;rank=9 scaffold_5 ensembl protein_coding_gene 672833 673966 . - . ID=Phyra73983;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000190;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 672833 673966 . - . ID=Phyra73983;Parent=Phyra73983;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 672833 672922 . - 0 ID=Phyra73983;Parent=Phyra73983;rank=6 scaffold_5 . exon 672833 672922 . - . ID=Phyra73983.6;Parent=Phyra73983;constitutive=1;rank=6 scaffold_5 . CDS 673013 673038 . - 0 ID=Phyra73983;Parent=Phyra73983;rank=5 scaffold_5 . exon 673013 673038 . - . ID=Phyra73983.5;Parent=Phyra73983;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 673096 673120 . - 0 ID=Phyra73983;Parent=Phyra73983;rank=4 scaffold_5 . exon 673096 673120 . - . ID=Phyra73983.4;Parent=Phyra73983;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 673199 673265 . - 0 ID=Phyra73983;Parent=Phyra73983;rank=3 scaffold_5 . exon 673199 673265 . - . ID=Phyra73983.3;Parent=Phyra73983;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 673344 673636 . - 0 ID=Phyra73983;Parent=Phyra73983;rank=2 scaffold_5 . exon 673344 673636 . - . ID=Phyra73983.2;Parent=Phyra73983;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 673715 673966 . - 0 ID=Phyra73983;Parent=Phyra73983;rank=1 scaffold_5 . exon 673715 673966 . - . ID=Phyra73983.1;Parent=Phyra73983;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 675938 676762 . + . ID=Phyra73984;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000191;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 675938 676762 . + . ID=Phyra73984;Parent=Phyra73984;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 675938 676762 . + 0 ID=Phyra73984;Parent=Phyra73984;rank=1 scaffold_5 . exon 675938 676762 . + . ID=Phyra73984.1;Parent=Phyra73984;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 677083 678715 . + . ID=Phyra73985;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000192;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 677083 678715 . + . ID=Phyra73985;Parent=Phyra73985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 677083 677102 . + 0 ID=Phyra73985;Parent=Phyra73985;rank=1 scaffold_5 . exon 677083 677102 . + . ID=Phyra73985.1;Parent=Phyra73985;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 677229 677380 . + 0 ID=Phyra73985;Parent=Phyra73985;rank=2 scaffold_5 . exon 677229 677380 . + . ID=Phyra73985.2;Parent=Phyra73985;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 677475 677599 . + 0 ID=Phyra73985;Parent=Phyra73985;rank=3 scaffold_5 . exon 677475 677599 . + . ID=Phyra73985.3;Parent=Phyra73985;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 677670 677738 . + 0 ID=Phyra73985;Parent=Phyra73985;rank=4 scaffold_5 . exon 677670 677738 . + . ID=Phyra73985.4;Parent=Phyra73985;constitutive=1;rank=4 scaffold_5 . CDS 677842 677851 . + 0 ID=Phyra73985;Parent=Phyra73985;rank=5 scaffold_5 . exon 677842 677851 . + . ID=Phyra73985.5;Parent=Phyra73985;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_5 . CDS 677997 678535 . + 0 ID=Phyra73985;Parent=Phyra73985;rank=6 scaffold_5 . exon 677997 678535 . + . ID=Phyra73985.6;Parent=Phyra73985;constitutive=1;ensembl_phase=1;rank=6 scaffold_5 . CDS 678577 678581 . + 0 ID=Phyra73985;Parent=Phyra73985;rank=7 scaffold_5 . CDS 678616 678715 . + 0 ID=Phyra73985;Parent=Phyra73985;rank=8 scaffold_5 . exon 678577 678581 . + . ID=Phyra73985.7;Parent=Phyra73985;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_5 . exon 678616 678715 . + . ID=Phyra73985.8;Parent=Phyra73985;constitutive=1;ensembl_phase=2;rank=8 scaffold_5 ensembl protein_coding_gene 681146 683330 . - . ID=Phyra73986;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000193;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 681146 683330 . - . ID=Phyra73986;Parent=Phyra73986;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 681146 681222 . - 0 ID=Phyra73986;Parent=Phyra73986;rank=7 scaffold_5 . exon 681146 681222 . - . ID=Phyra73986.7;Parent=Phyra73986;constitutive=1;ensembl_phase=1;rank=7 scaffold_5 . CDS 681464 681536 . - 0 ID=Phyra73986;Parent=Phyra73986;rank=6 scaffold_5 . exon 681464 681536 . - . ID=Phyra73986.6;Parent=Phyra73986;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_5 . CDS 681724 681747 . - 0 ID=Phyra73986;Parent=Phyra73986;rank=5 scaffold_5 . exon 681724 681747 . - . ID=Phyra73986.5;Parent=Phyra73986;constitutive=1;rank=5 scaffold_5 . CDS 681781 682584 . - 0 ID=Phyra73986;Parent=Phyra73986;rank=4 scaffold_5 . exon 681781 682584 . - . ID=Phyra73986.4;Parent=Phyra73986;constitutive=1;rank=4 scaffold_5 . CDS 682661 682732 . - 0 ID=Phyra73986;Parent=Phyra73986;rank=3 scaffold_5 . exon 682661 682732 . - . ID=Phyra73986.3;Parent=Phyra73986;constitutive=1;rank=3 scaffold_5 . CDS 682821 683001 . - 0 ID=Phyra73986;Parent=Phyra73986;rank=2 scaffold_5 . exon 682821 683001 . - . ID=Phyra73986.2;Parent=Phyra73986;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 683095 683330 . - 0 ID=Phyra73986;Parent=Phyra73986;rank=1 scaffold_5 . exon 683095 683330 . - . ID=Phyra73986.1;Parent=Phyra73986;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 686171 687665 . + . ID=Phyra73987;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000194;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 686171 687665 . + . ID=Phyra73987;Parent=Phyra73987;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 686171 686193 . + 0 ID=Phyra73987;Parent=Phyra73987;rank=1 scaffold_5 . exon 686171 686193 . + . ID=Phyra73987.1;Parent=Phyra73987;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 686260 686332 . + 0 ID=Phyra73987;Parent=Phyra73987;rank=2 scaffold_5 . exon 686260 686332 . + . ID=Phyra73987.2;Parent=Phyra73987;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 686375 686484 . + 0 ID=Phyra73987;Parent=Phyra73987;rank=3 scaffold_5 . exon 686375 686484 . + . ID=Phyra73987.3;Parent=Phyra73987;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_5 . CDS 686540 686665 . + 0 ID=Phyra73987;Parent=Phyra73987;rank=4 scaffold_5 . exon 686540 686665 . + . ID=Phyra73987.4;Parent=Phyra73987;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_5 . CDS 686731 686781 . + 0 ID=Phyra73987;Parent=Phyra73987;rank=5 scaffold_5 . exon 686731 686781 . + . ID=Phyra73987.5;Parent=Phyra73987;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_5 . CDS 686846 686962 . + 0 ID=Phyra73987;Parent=Phyra73987;rank=6 scaffold_5 . exon 686846 686962 . + . ID=Phyra73987.6;Parent=Phyra73987;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_5 . CDS 687094 687211 . + 0 ID=Phyra73987;Parent=Phyra73987;rank=7 scaffold_5 . exon 687094 687211 . + . ID=Phyra73987.7;Parent=Phyra73987;constitutive=1;ensembl_phase=2;rank=7 scaffold_5 . CDS 687282 687665 . + 0 ID=Phyra73987;Parent=Phyra73987;rank=8 scaffold_5 . exon 687282 687665 . + . ID=Phyra73987.8;Parent=Phyra73987;constitutive=1;rank=8 scaffold_5 ensembl protein_coding_gene 687787 690690 . - . ID=Phyra73988;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000195;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 687787 690690 . - . ID=Phyra73988;Parent=Phyra73988;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 687787 690690 . - 0 ID=Phyra73988;Parent=Phyra73988;rank=1 scaffold_5 . exon 687787 690690 . - . ID=Phyra73988.1;Parent=Phyra73988;constitutive=1;rank=1 scaffold_5 . biological_region 690407 690411 0.999 + . logic_name=eponine scaffold_5 . biological_region 690452 690457 0.999 + . logic_name=eponine scaffold_5 . biological_region 691070 691073 0.999 + . logic_name=eponine scaffold_5 . biological_region 691241 691248 0.999 - . logic_name=eponine scaffold_5 . biological_region 691919 691921 0.999 - . logic_name=eponine scaffold_5 . biological_region 694549 694552 0.999 + . logic_name=eponine scaffold_5 . biological_region 694611 694617 0.999 + . logic_name=eponine scaffold_5 . repeat_region 695485 695509 . ? . description=trf scaffold_5 . biological_region 697959 697961 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 694353 696533 . + . ID=Phyra73990;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000197;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 694353 696533 . + . ID=Phyra73990;Parent=Phyra73990;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 694353 694925 . + 0 ID=Phyra73990;Parent=Phyra73990;rank=1 scaffold_5 . exon 694353 694925 . + . ID=Phyra73990.1;Parent=Phyra73990;constitutive=1;rank=1 scaffold_5 . CDS 694985 695089 . + 0 ID=Phyra73990;Parent=Phyra73990;rank=2 scaffold_5 . exon 694985 695089 . + . ID=Phyra73990.2;Parent=Phyra73990;constitutive=1;rank=2 scaffold_5 . CDS 695164 695607 . + 0 ID=Phyra73990;Parent=Phyra73990;rank=3 scaffold_5 . exon 695164 695607 . + . ID=Phyra73990.3;Parent=Phyra73990;constitutive=1;rank=3 scaffold_5 . CDS 695693 695794 . + 0 ID=Phyra73990;Parent=Phyra73990;rank=4 scaffold_5 . exon 695693 695794 . + . ID=Phyra73990.4;Parent=Phyra73990;constitutive=1;rank=4 scaffold_5 . CDS 695875 696360 . + 0 ID=Phyra73990;Parent=Phyra73990;rank=5 scaffold_5 . exon 695875 696360 . + . ID=Phyra73990.5;Parent=Phyra73990;constitutive=1;rank=5 scaffold_5 . CDS 696462 696533 . + 0 ID=Phyra73990;Parent=Phyra73990;rank=6 scaffold_5 . exon 696462 696533 . + . ID=Phyra73990.6;Parent=Phyra73990;constitutive=1;rank=6 scaffold_5 ensembl protein_coding_gene 692056 694176 . + . ID=Phyra93768;biotype=protein_coding;external_name=C_scaffold_5000059;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 692056 694176 . + . ID=Phyra93768;Parent=Phyra93768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 692056 692579 . + 0 ID=Phyra93768;Parent=Phyra93768;rank=1 scaffold_5 . exon 692056 692579 . + . ID=Phyra93768.1;Parent=Phyra93768;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 692667 692788 . + 0 ID=Phyra93768;Parent=Phyra93768;rank=2 scaffold_5 . exon 692667 692788 . + . ID=Phyra93768.2;Parent=Phyra93768;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 692865 693577 . + 0 ID=Phyra93768;Parent=Phyra93768;rank=3 scaffold_5 . exon 692865 693577 . + . ID=Phyra93768.3;Parent=Phyra93768;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 693656 693902 . + 0 ID=Phyra93768;Parent=Phyra93768;rank=4 scaffold_5 . exon 693656 693902 . + . ID=Phyra93768.4;Parent=Phyra93768;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 693974 694176 . + 0 ID=Phyra93768;Parent=Phyra93768;rank=5 scaffold_5 . exon 693974 694176 . + . ID=Phyra93768.5;Parent=Phyra93768;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 ensembl protein_coding_gene 696697 699929 . - . ID=Phyra93772;biotype=protein_coding;external_name=C_scaffold_5000063;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 696697 699929 . - . ID=Phyra93772;Parent=Phyra93772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 696697 696716 . - 0 ID=Phyra93772;Parent=Phyra93772;rank=2 scaffold_5 . exon 696697 696716 . - . ID=Phyra93772.2;Parent=Phyra93772;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 696746 699929 . - 0 ID=Phyra93772;Parent=Phyra93772;rank=1 scaffold_5 . exon 696746 699929 . - . ID=Phyra93772.1;Parent=Phyra93772;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . repeat_region 703553 703560 . ? . description=dust scaffold_5 . repeat_region 706439 706488 . ? . description=dust scaffold_5 ensembl protein_coding_gene 700424 703513 . + . ID=Phyra73992;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000199;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 700424 703513 . + . ID=Phyra73992;Parent=Phyra73992;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 700424 703513 . + 0 ID=Phyra73992;Parent=Phyra73992;rank=1 scaffold_5 . exon 700424 703513 . + . ID=Phyra73992.1;Parent=Phyra73992;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 705185 706051 . + . ID=Phyra73993;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000200;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 705185 706051 . + . ID=Phyra73993;Parent=Phyra73993;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 705185 706051 . + 0 ID=Phyra73993;Parent=Phyra73993;rank=1 scaffold_5 . exon 705185 706051 . + . ID=Phyra73993.1;Parent=Phyra73993;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 706680 710314 . - . ID=Phyra73994;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000201;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 706680 710314 . - . ID=Phyra73994;Parent=Phyra73994;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 706680 706686 . - 0 ID=Phyra73994;Parent=Phyra73994;rank=7 scaffold_5 . exon 706680 706686 . - . ID=Phyra73994.7;Parent=Phyra73994;constitutive=1;ensembl_phase=2;rank=7 scaffold_5 . CDS 706727 706850 . - 0 ID=Phyra73994;Parent=Phyra73994;rank=6 scaffold_5 . exon 706727 706850 . - . ID=Phyra73994.6;Parent=Phyra73994;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_5 . CDS 707006 707322 . - 0 ID=Phyra73994;Parent=Phyra73994;rank=5 scaffold_5 . exon 707006 707322 . - . ID=Phyra73994.5;Parent=Phyra73994;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_5 . CDS 707572 708032 . - 0 ID=Phyra73994;Parent=Phyra73994;rank=4 scaffold_5 . exon 707572 708032 . - . ID=Phyra73994.4;Parent=Phyra73994;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_5 . CDS 708439 708852 . - 0 ID=Phyra73994;Parent=Phyra73994;rank=3 scaffold_5 . CDS 708959 710037 . - 0 ID=Phyra73994;Parent=Phyra73994;rank=2 scaffold_5 . CDS 710191 710314 . - 0 ID=Phyra73994;Parent=Phyra73994;rank=1 scaffold_5 . biological_region 709382 709382 0.999 - . logic_name=eponine scaffold_5 . biological_region 709433 709437 0.999 - . logic_name=eponine scaffold_5 . biological_region 709536 709539 0.999 - . logic_name=eponine scaffold_5 . biological_region 709588 709590 0.999 - . logic_name=eponine scaffold_5 . biological_region 713007 713013 0.999 + . logic_name=eponine scaffold_5 . exon 708439 708852 . - . ID=Phyra73994.3;Parent=Phyra73994;constitutive=1;rank=3 scaffold_5 . exon 708959 710037 . - . ID=Phyra73994.2;Parent=Phyra73994;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . exon 710191 710314 . - . ID=Phyra73994.1;Parent=Phyra73994;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . repeat_region 714068 720111 . ? . description=dust scaffold_5 . repeat_region 721093 721142 . ? . description=dust scaffold_5 . repeat_region 721875 721909 . ? . description=dust scaffold_5 . repeat_region 721879 721905 . ? . description=trf scaffold_5 . repeat_region 721882 721909 . ? . description=trf scaffold_5 . biological_region 729947 729950 0.999 + . logic_name=eponine scaffold_5 . biological_region 730219 730220 0.999 + . logic_name=eponine scaffold_5 . biological_region 730258 730260 0.999 - . logic_name=eponine scaffold_5 . biological_region 730529 730531 0.999 - . logic_name=eponine scaffold_5 . biological_region 734957 734957 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 736533 737168 . - . ID=Phyra73995;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000202;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 736533 737168 . - . ID=Phyra73995;Parent=Phyra73995;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 736533 737168 . - 0 ID=Phyra73995;Parent=Phyra73995;rank=1 scaffold_5 . exon 736533 737168 . - . ID=Phyra73995.1;Parent=Phyra73995;constitutive=1;rank=1 scaffold_5 . repeat_region 737674 738696 . ? . description=dust scaffold_5 . repeat_region 740271 740323 . ? . description=trf scaffold_5 . repeat_region 740577 741138 . ? . description=dust scaffold_5 . repeat_region 747775 747783 . ? . description=dust scaffold_5 ensembl protein_coding_gene 739353 740397 . - . ID=Phyra73996;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000203;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 739353 740397 . - . ID=Phyra73996;Parent=Phyra73996;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 739353 740161 . - 0 ID=Phyra73996;Parent=Phyra73996;rank=2 scaffold_5 . exon 739353 740161 . - . ID=Phyra73996.2;Parent=Phyra73996;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 740238 740397 . - 0 ID=Phyra73996;Parent=Phyra73996;rank=1 scaffold_5 . exon 740238 740397 . - . ID=Phyra73996.1;Parent=Phyra73996;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 745352 746938 . - . ID=Phyra73997;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000204;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 745352 746938 . - . ID=Phyra73997;Parent=Phyra73997;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 745352 745371 . - 0 ID=Phyra73997;Parent=Phyra73997;rank=5 scaffold_5 . exon 745352 745371 . - . ID=Phyra73997.5;Parent=Phyra73997;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 745414 745750 . - 0 ID=Phyra73997;Parent=Phyra73997;rank=4 scaffold_5 . exon 745414 745750 . - . ID=Phyra73997.4;Parent=Phyra73997;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 745823 746323 . - 0 ID=Phyra73997;Parent=Phyra73997;rank=3 scaffold_5 . exon 745823 746323 . - . ID=Phyra73997.3;Parent=Phyra73997;constitutive=1;rank=3 scaffold_5 . CDS 746389 746586 . - 0 ID=Phyra73997;Parent=Phyra73997;rank=2 scaffold_5 . exon 746389 746586 . - . ID=Phyra73997.2;Parent=Phyra73997;constitutive=1;rank=2 scaffold_5 . CDS 746654 746938 . - 0 ID=Phyra73997;Parent=Phyra73997;rank=1 scaffold_5 . exon 746654 746938 . - . ID=Phyra73997.1;Parent=Phyra73997;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 747356 747775 . + . ID=Phyra73998;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000205;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 747356 747775 . + . ID=Phyra73998;Parent=Phyra73998;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 747356 747775 . + 0 ID=Phyra73998;Parent=Phyra73998;rank=1 scaffold_5 . exon 747356 747775 . + . ID=Phyra73998.1;Parent=Phyra73998;constitutive=1;rank=1 scaffold_5 . biological_region 751116 751120 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 749214 750807 . - . ID=Phyra73999;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000206;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 749214 750807 . - . ID=Phyra73999;Parent=Phyra73999;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 749214 749228 . - 0 ID=Phyra73999;Parent=Phyra73999;rank=5 scaffold_5 . exon 749214 749228 . - . ID=Phyra73999.5;Parent=Phyra73999;constitutive=1;rank=5 scaffold_5 . CDS 749269 749331 . - 0 ID=Phyra73999;Parent=Phyra73999;rank=4 scaffold_5 . exon 749269 749331 . - . ID=Phyra73999.4;Parent=Phyra73999;constitutive=1;rank=4 scaffold_5 . CDS 749395 749511 . - 0 ID=Phyra73999;Parent=Phyra73999;rank=3 scaffold_5 . exon 749395 749511 . - . ID=Phyra73999.3;Parent=Phyra73999;constitutive=1;rank=3 scaffold_5 . CDS 749607 750761 . - 0 ID=Phyra73999;Parent=Phyra73999;rank=2 scaffold_5 . exon 749607 750761 . - . ID=Phyra73999.2;Parent=Phyra73999;constitutive=1;rank=2 scaffold_5 . CDS 750793 750807 . - 0 ID=Phyra73999;Parent=Phyra73999;rank=1 scaffold_5 . exon 750793 750807 . - . ID=Phyra73999.1;Parent=Phyra73999;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 754242 754928 . - . ID=Phyra74000;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000207;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 754242 754928 . - . ID=Phyra74000;Parent=Phyra74000;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 754242 754928 . - 0 ID=Phyra74000;Parent=Phyra74000;rank=1 scaffold_5 . exon 754242 754928 . - . ID=Phyra74000.1;Parent=Phyra74000;constitutive=1;rank=1 scaffold_5 . repeat_region 761758 761807 . ? . description=dust scaffold_5 . repeat_region 762936 762985 . ? . description=dust scaffold_5 . repeat_region 763712 764733 . ? . description=dust scaffold_5 ensembl protein_coding_gene 758626 761245 . - . ID=Phyra74001;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000208;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 758626 761245 . - . ID=Phyra74001;Parent=Phyra74001;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 758626 758666 . - 0 ID=Phyra74001;Parent=Phyra74001;rank=4 scaffold_5 . exon 758626 758666 . - . ID=Phyra74001.4;Parent=Phyra74001;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 758698 759721 . - 0 ID=Phyra74001;Parent=Phyra74001;rank=3 scaffold_5 . exon 758698 759721 . - . ID=Phyra74001.3;Parent=Phyra74001;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 760128 760607 . - 0 ID=Phyra74001;Parent=Phyra74001;rank=2 scaffold_5 . exon 760128 760607 . - . ID=Phyra74001.2;Parent=Phyra74001;constitutive=1;rank=2 scaffold_5 . CDS 760658 761245 . - 0 ID=Phyra74001;Parent=Phyra74001;rank=1 scaffold_5 . exon 760658 761245 . - . ID=Phyra74001.1;Parent=Phyra74001;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 765425 765763 . - . ID=Phyra74002;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000209;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 765425 765763 . - . ID=Phyra74002;Parent=Phyra74002;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 765425 765763 . - 0 ID=Phyra74002;Parent=Phyra74002;rank=1 scaffold_5 . exon 765425 765763 . - . ID=Phyra74002.1;Parent=Phyra74002;constitutive=1;rank=1 scaffold_5 . repeat_region 768765 768842 . ? . description=trf scaffold_5 . repeat_region 769131 769199 . ? . description=trf scaffold_5 . biological_region 770972 770976 0.999 + . logic_name=eponine scaffold_5 . biological_region 771019 771021 0.999 - . logic_name=eponine scaffold_5 . biological_region 771109 771109 0.999 - . logic_name=eponine scaffold_5 . repeat_region 776614 776660 . ? . description=trf scaffold_5 ensembl protein_coding_gene 770215 771280 . + . ID=Phyra74003;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000210;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 770215 771280 . + . ID=Phyra74003;Parent=Phyra74003;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 770215 770640 . + 0 ID=Phyra74003;Parent=Phyra74003;rank=1 scaffold_5 . exon 770215 770640 . + . ID=Phyra74003.1;Parent=Phyra74003;constitutive=1;rank=1 scaffold_5 . CDS 770708 771280 . + 0 ID=Phyra74003;Parent=Phyra74003;rank=2 scaffold_5 . exon 770708 771280 . + . ID=Phyra74003.2;Parent=Phyra74003;constitutive=1;rank=2 scaffold_5 ensembl protein_coding_gene 774039 778045 . - . ID=Phyra74004;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000211;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 774039 778045 . - . ID=Phyra74004;Parent=Phyra74004;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 774039 774740 . - 0 ID=Phyra74004;Parent=Phyra74004;rank=5 scaffold_5 . exon 774039 774740 . - . ID=Phyra74004.5;Parent=Phyra74004;constitutive=1;rank=5 scaffold_5 . CDS 774813 774859 . - 0 ID=Phyra74004;Parent=Phyra74004;rank=4 scaffold_5 . exon 774813 774859 . - . ID=Phyra74004.4;Parent=Phyra74004;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 775030 775268 . - 0 ID=Phyra74004;Parent=Phyra74004;rank=3 scaffold_5 . exon 775030 775268 . - . ID=Phyra74004.3;Parent=Phyra74004;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 775349 775449 . - 0 ID=Phyra74004;Parent=Phyra74004;rank=2 scaffold_5 . exon 775349 775449 . - . ID=Phyra74004.2;Parent=Phyra74004;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 775601 778045 . - 0 ID=Phyra74004;Parent=Phyra74004;rank=1 scaffold_5 . exon 775601 778045 . - . ID=Phyra74004.1;Parent=Phyra74004;constitutive=1;rank=1 scaffold_5 . repeat_region 783508 783515 . ? . description=dust scaffold_5 . repeat_region 787614 787828 . ? . description=dust scaffold_5 ensembl protein_coding_gene 778393 781168 . + . ID=Phyra74005;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000212;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 778393 781168 . + . ID=Phyra74005;Parent=Phyra74005;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 778393 778399 . + 0 ID=Phyra74005;Parent=Phyra74005;rank=1 scaffold_5 . exon 778393 778399 . + . ID=Phyra74005.1;Parent=Phyra74005;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 778428 781168 . + 0 ID=Phyra74005;Parent=Phyra74005;rank=2 scaffold_5 . exon 778428 781168 . + . ID=Phyra74005.2;Parent=Phyra74005;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 ensembl protein_coding_gene 783555 786584 . - . ID=Phyra74006;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000213;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 783555 786584 . - . ID=Phyra74006;Parent=Phyra74006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 783555 786584 . - 0 ID=Phyra74006;Parent=Phyra74006;rank=1 scaffold_5 . exon 783555 786584 . - . ID=Phyra74006.1;Parent=Phyra74006;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 786847 788464 . - . ID=Phyra74007;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000214;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 786847 788464 . - . ID=Phyra74007;Parent=Phyra74007;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 786847 787605 . - 0 ID=Phyra74007;Parent=Phyra74007;rank=2 scaffold_5 . exon 786847 787605 . - . ID=Phyra74007.2;Parent=Phyra74007;constitutive=1;rank=2 scaffold_5 . CDS 787871 788464 . - 0 ID=Phyra74007;Parent=Phyra74007;rank=1 scaffold_5 . biological_region 788238 788238 0.999 - . logic_name=eponine scaffold_5 . repeat_region 789227 789251 . ? . description=trf scaffold_5 . biological_region 791666 791670 0.999 + . logic_name=eponine scaffold_5 . biological_region 792238 792243 0.999 - . logic_name=eponine scaffold_5 . biological_region 794458 794459 0.999 + . logic_name=eponine scaffold_5 . biological_region 795171 795171 0.999 + . logic_name=eponine scaffold_5 . biological_region 795367 795372 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 793657 794951 . - . ID=Phyra71165;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000034;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 793657 794951 . - . ID=Phyra71165;Parent=Phyra71165;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 793657 794037 . - 0 ID=Phyra71165;Parent=Phyra71165;rank=2 scaffold_5 . exon 793657 794037 . - . ID=Phyra71165.2;Parent=Phyra71165;constitutive=1;rank=2 scaffold_5 . CDS 794199 794951 . - 0 ID=Phyra71165;Parent=Phyra71165;rank=1 scaffold_5 . exon 794199 794951 . - . ID=Phyra71165.1;Parent=Phyra71165;constitutive=1;rank=1 scaffold_5 . exon 787871 788464 . - . ID=Phyra74007.1;Parent=Phyra74007;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 791691 793379 . + . ID=Phyra74008;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000215;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 791691 793379 . + . ID=Phyra74008;Parent=Phyra74008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 791691 793379 . + 0 ID=Phyra74008;Parent=Phyra74008;rank=1 scaffold_5 . exon 791691 793379 . + . ID=Phyra74008.1;Parent=Phyra74008;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 795085 798834 . + . ID=Phyra74010;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000217;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 795085 798834 . + . ID=Phyra74010;Parent=Phyra74010;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 795085 798834 . + 0 ID=Phyra74010;Parent=Phyra74010;rank=1 scaffold_5 . exon 795085 798834 . + . ID=Phyra74010.1;Parent=Phyra74010;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 800918 802558 . - . ID=Phyra71166;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_5000035;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 800918 802558 . - . ID=Phyra71166;Parent=Phyra71166;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 800918 801016 . - 0 ID=Phyra71166;Parent=Phyra71166;rank=3 scaffold_5 . exon 800918 801016 . - . ID=Phyra71166.3;Parent=Phyra71166;constitutive=1;rank=3 scaffold_5 . CDS 801106 802256 . - 0 ID=Phyra71166;Parent=Phyra71166;rank=2 scaffold_5 . exon 801106 802256 . - . ID=Phyra71166.2;Parent=Phyra71166;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 802330 802558 . - 0 ID=Phyra71166;Parent=Phyra71166;rank=1 scaffold_5 . exon 802330 802558 . - . ID=Phyra71166.1;Parent=Phyra71166;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 799018 800470 . - . ID=Phyra74011;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000218;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 799018 800470 . - . ID=Phyra74011;Parent=Phyra74011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 799018 799790 . - 0 ID=Phyra74011;Parent=Phyra74011;rank=2 scaffold_5 . exon 799018 799790 . - . ID=Phyra74011.2;Parent=Phyra74011;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 799834 800470 . - 0 ID=Phyra74011;Parent=Phyra74011;rank=1 scaffold_5 . exon 799834 800470 . - . ID=Phyra74011.1;Parent=Phyra74011;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 802970 805285 . + . ID=Phyra93777;biotype=protein_coding;external_name=C_scaffold_5000068;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 802970 805285 . + . ID=Phyra93777;Parent=Phyra93777;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 802970 803171 . + 0 ID=Phyra93777;Parent=Phyra93777;rank=1 scaffold_5 . exon 802970 803171 . + . ID=Phyra93777.1;Parent=Phyra93777;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 803250 803444 . + 0 ID=Phyra93777;Parent=Phyra93777;rank=2 scaffold_5 . exon 803250 803444 . + . ID=Phyra93777.2;Parent=Phyra93777;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 803546 803697 . + 0 ID=Phyra93777;Parent=Phyra93777;rank=3 scaffold_5 . exon 803546 803697 . + . ID=Phyra93777.3;Parent=Phyra93777;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 803764 803939 . + 0 ID=Phyra93777;Parent=Phyra93777;rank=4 scaffold_5 . exon 803764 803939 . + . ID=Phyra93777.4;Parent=Phyra93777;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_5 . CDS 804027 804228 . + 0 ID=Phyra93777;Parent=Phyra93777;rank=5 scaffold_5 . exon 804027 804228 . + . ID=Phyra93777.5;Parent=Phyra93777;constitutive=1;ensembl_phase=2;rank=5 scaffold_5 . CDS 804409 804460 . + 0 ID=Phyra93777;Parent=Phyra93777;rank=6 scaffold_5 . exon 804409 804460 . + . ID=Phyra93777.6;Parent=Phyra93777;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_5 . CDS 804599 804759 . + 0 ID=Phyra93777;Parent=Phyra93777;rank=7 scaffold_5 . exon 804599 804759 . + . ID=Phyra93777.7;Parent=Phyra93777;constitutive=1;ensembl_phase=1;rank=7 scaffold_5 . CDS 804850 805131 . + 0 ID=Phyra93777;Parent=Phyra93777;rank=8 scaffold_5 . exon 804850 805131 . + . ID=Phyra93777.8;Parent=Phyra93777;constitutive=1;rank=8 scaffold_5 . CDS 805169 805285 . + 0 ID=Phyra93777;Parent=Phyra93777;rank=9 scaffold_5 . exon 805169 805285 . + . ID=Phyra93777.9;Parent=Phyra93777;constitutive=1;rank=9 scaffold_5 . biological_region 808724 808727 0.999 - . logic_name=eponine scaffold_5 . biological_region 810161 810164 0.999 - . logic_name=eponine scaffold_5 . repeat_region 813016 813045 . ? . description=dust scaffold_5 ensembl protein_coding_gene 811907 812950 . - . ID=Phyra74014;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000221;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 811907 812950 . - . ID=Phyra74014;Parent=Phyra74014;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 811907 812014 . - 0 ID=Phyra74014;Parent=Phyra74014;rank=6 scaffold_5 . exon 811907 812014 . - . ID=Phyra74014.6;Parent=Phyra74014;constitutive=1;rank=6 scaffold_5 . CDS 812098 812195 . - 0 ID=Phyra74014;Parent=Phyra74014;rank=5 scaffold_5 . exon 812098 812195 . - . ID=Phyra74014.5;Parent=Phyra74014;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 812288 812528 . - 0 ID=Phyra74014;Parent=Phyra74014;rank=4 scaffold_5 . exon 812288 812528 . - . ID=Phyra74014.4;Parent=Phyra74014;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 812610 812682 . - 0 ID=Phyra74014;Parent=Phyra74014;rank=3 scaffold_5 . exon 812610 812682 . - . ID=Phyra74014.3;Parent=Phyra74014;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 812757 812859 . - 0 ID=Phyra74014;Parent=Phyra74014;rank=2 scaffold_5 . exon 812757 812859 . - . ID=Phyra74014.2;Parent=Phyra74014;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_5 . CDS 812884 812950 . - 0 ID=Phyra74014;Parent=Phyra74014;rank=1 scaffold_5 . exon 812884 812950 . - . ID=Phyra74014.1;Parent=Phyra74014;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 814350 815747 . + . ID=Phyra74015;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000222;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 814350 815747 . + . ID=Phyra74015;Parent=Phyra74015;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 814350 815747 . + 0 ID=Phyra74015;Parent=Phyra74015;rank=1 scaffold_5 . exon 814350 815747 . + . ID=Phyra74015.1;Parent=Phyra74015;constitutive=1;rank=1 scaffold_5 . repeat_region 824444 824518 . ? . description=trf scaffold_5 . repeat_region 824449 824488 . ? . description=trf scaffold_5 . repeat_region 825000 825048 . ? . description=trf scaffold_5 ensembl protein_coding_gene 820995 821954 . + . ID=Phyra74016;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000223;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 820995 821954 . + . ID=Phyra74016;Parent=Phyra74016;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 820995 821954 . + 0 ID=Phyra74016;Parent=Phyra74016;rank=1 scaffold_5 . exon 820995 821954 . + . ID=Phyra74016.1;Parent=Phyra74016;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 824178 827661 . + . ID=Phyra74017;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_5000224;logic_name=jgi_phyra1 scaffold_5 ensembl transcript 824178 827661 . + . ID=Phyra74017;Parent=Phyra74017;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_5 . CDS 824178 827661 . + 0 ID=Phyra74017;Parent=Phyra74017;rank=1 scaffold_5 . exon 824178 827661 . + . ID=Phyra74017.1;Parent=Phyra74017;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_3 1 946144 scaffold_3 . repeat_region 620 645 . ? . description=trf scaffold_3 . repeat_region 1158 27885 . ? . description=dust scaffold_3 . repeat_region 1158 27885 . ? . description=dust scaffold_3 . biological_region 28177 28181 0.999 + . logic_name=eponine scaffold_3 . repeat_region 28954 33310 . ? . description=dust scaffold_3 . repeat_region 33665 33724 . ? . description=trf scaffold_3 . repeat_region 33838 33888 . ? . description=trf scaffold_3 ensembl protein_coding_gene 36444 37771 . + . ID=Phyra71092;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000001;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 36444 37771 . + . ID=Phyra71092;Parent=Phyra71092;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 36444 36548 . + 0 ID=Phyra71092;Parent=Phyra71092;rank=1 scaffold_3 . exon 36444 36548 . + . ID=Phyra71092.1;Parent=Phyra71092;constitutive=1;rank=1 scaffold_3 . CDS 36611 36934 . + 0 ID=Phyra71092;Parent=Phyra71092;rank=2 scaffold_3 . exon 36611 36934 . + . ID=Phyra71092.2;Parent=Phyra71092;constitutive=1;rank=2 scaffold_3 . CDS 37012 37319 . + 0 ID=Phyra71092;Parent=Phyra71092;rank=3 scaffold_3 . exon 37012 37319 . + . ID=Phyra71092.3;Parent=Phyra71092;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_3 . CDS 37387 37574 . + 0 ID=Phyra71092;Parent=Phyra71092;rank=4 scaffold_3 . exon 37387 37574 . + . ID=Phyra71092.4;Parent=Phyra71092;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 37656 37771 . + 0 ID=Phyra71092;Parent=Phyra71092;rank=5 scaffold_3 . exon 37656 37771 . + . ID=Phyra71092.5;Parent=Phyra71092;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . biological_region 39989 39997 0.999 - . logic_name=eponine scaffold_3 . biological_region 40015 40017 0.999 - . logic_name=eponine scaffold_3 . biological_region 40053 40056 0.999 - . logic_name=eponine scaffold_3 . biological_region 40141 40149 0.999 + . logic_name=eponine scaffold_3 . biological_region 40195 40200 0.999 - . logic_name=eponine scaffold_3 . biological_region 40349 40353 0.999 - . logic_name=eponine scaffold_3 . biological_region 40358 40363 0.999 - . logic_name=eponine scaffold_3 . biological_region 41438 41440 0.999 - . logic_name=eponine scaffold_3 . biological_region 42578 42581 0.999 - . logic_name=eponine scaffold_3 . biological_region 42748 42750 0.999 + . logic_name=eponine scaffold_3 . biological_region 43732 43736 0.999 + . logic_name=eponine scaffold_3 . biological_region 44738 44744 0.999 - . logic_name=eponine scaffold_3 . repeat_region 46937 47011 . + . description=Sola3-2_PS scaffold_3 . biological_region 48047 48050 0.999 + . logic_name=eponine scaffold_3 . biological_region 48529 48531 0.999 + . logic_name=eponine scaffold_3 . biological_region 49434 49437 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 44179 44772 . + . ID=Phyra71093;biotype=protein_coding;description=Elicitin-like protein RAL1A [Source:UniProtKB/TrEMBL%3BAcc:Q2N0C3];external_name=fgenesh1_pm.C_scaffold_3000002;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 44179 44772 . + . ID=Phyra71093;Parent=Phyra71093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 44179 44772 . + 0 ID=Phyra71093;Parent=Phyra71093;rank=1 scaffold_3 . exon 44179 44772 . + . ID=Phyra71093.1;Parent=Phyra71093;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 40502 42994 . + . ID=Phyra73245;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000002;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 40502 42994 . + . ID=Phyra73245;Parent=Phyra73245;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 40502 42994 . + 0 ID=Phyra73245;Parent=Phyra73245;rank=1 scaffold_3 . exon 40502 42994 . + . ID=Phyra73245.1;Parent=Phyra73245;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 45290 47213 . + . ID=Phyra73247;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000004;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 45290 47213 . + . ID=Phyra73247;Parent=Phyra73247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 45290 45365 . + 0 ID=Phyra73247;Parent=Phyra73247;rank=1 scaffold_3 . exon 45290 45365 . + . ID=Phyra73247.1;Parent=Phyra73247;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 45433 47213 . + 0 ID=Phyra73247;Parent=Phyra73247;rank=2 scaffold_3 . exon 45433 47213 . + . ID=Phyra73247.2;Parent=Phyra73247;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 47953 48699 . + . ID=Phyra73248;biotype=protein_coding;description=Elicitin-like protein RAL1B [Source:UniProtKB/TrEMBL%3BAcc:Q2N0C2];external_name=fgenesh1_pg.C_scaffold_3000005;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 47953 48699 . + . ID=Phyra73248;Parent=Phyra73248;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 47953 48699 . + 0 ID=Phyra73248;Parent=Phyra73248;rank=1 scaffold_3 . exon 47953 48699 . + . ID=Phyra73248.1;Parent=Phyra73248;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 49068 50020 . - . ID=Phyra93564;biotype=protein_coding;external_name=C_scaffold_3000003;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 49068 50020 . - . ID=Phyra93564;Parent=Phyra93564;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 49068 50018 . - 0 ID=Phyra93564;Parent=Phyra93564;rank=1 scaffold_3 . exon 49068 50020 . - . ID=Phyra93564.1;Parent=Phyra93564;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 . repeat_region 50213 50248 . ? . description=dust scaffold_3 . repeat_region 55955 55974 . ? . description=dust scaffold_3 . repeat_region 58569 58599 . ? . description=trf scaffold_3 ensembl protein_coding_gene 50893 52473 . - . ID=Phyra71094;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000003;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 50893 52473 . - . ID=Phyra71094;Parent=Phyra71094;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 50893 52473 . - 0 ID=Phyra71094;Parent=Phyra71094;rank=1 scaffold_3 . exon 50893 52473 . - . ID=Phyra71094.1;Parent=Phyra71094;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 52745 54436 . - . ID=Phyra73251;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000008;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 52745 54436 . - . ID=Phyra73251;Parent=Phyra73251;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 52745 54436 . - 0 ID=Phyra73251;Parent=Phyra73251;rank=1 scaffold_3 . exon 52745 54436 . - . ID=Phyra73251.1;Parent=Phyra73251;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 54744 56576 . + . ID=Phyra73252;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000009;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 54744 56576 . + . ID=Phyra73252;Parent=Phyra73252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 54744 56576 . + 0 ID=Phyra73252;Parent=Phyra73252;rank=1 scaffold_3 . exon 54744 56576 . + . ID=Phyra73252.1;Parent=Phyra73252;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 57871 58973 . - . ID=Phyra73253;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000010;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 57871 58973 . - . ID=Phyra73253;Parent=Phyra73253;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 57871 58671 . - 0 ID=Phyra73253;Parent=Phyra73253;rank=3 scaffold_3 . exon 57871 58671 . - . ID=Phyra73253.3;Parent=Phyra73253;constitutive=1;rank=3 scaffold_3 . CDS 58739 58829 . - 0 ID=Phyra73253;Parent=Phyra73253;rank=2 scaffold_3 . exon 58739 58829 . - . ID=Phyra73253.2;Parent=Phyra73253;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 58903 58973 . - 0 ID=Phyra73253;Parent=Phyra73253;rank=1 scaffold_3 . exon 58903 58973 . - . ID=Phyra73253.1;Parent=Phyra73253;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . biological_region 60559 60561 0.999 - . logic_name=eponine scaffold_3 . biological_region 62301 62305 0.999 - . logic_name=eponine scaffold_3 . repeat_region 64160 64234 . - . description=GypsyPi-1c_LTR scaffold_3 . repeat_region 65233 65309 . - . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 65441 65521 . - . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 65743 65881 . - . description=GypsyPi-1c_I-int scaffold_3 ensembl protein_coding_gene 60533 61591 . + . ID=Phyra73254;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000011;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 60533 61591 . + . ID=Phyra73254;Parent=Phyra73254;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 60533 61591 . + 0 ID=Phyra73254;Parent=Phyra73254;rank=1 scaffold_3 . exon 60533 61591 . + . ID=Phyra73254.1;Parent=Phyra73254;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 62033 62550 . - . ID=Phyra73255;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000012;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 62033 62550 . - . ID=Phyra73255;Parent=Phyra73255;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 62033 62302 . - 0 ID=Phyra73255;Parent=Phyra73255;rank=3 scaffold_3 . exon 62033 62302 . - . ID=Phyra73255.3;Parent=Phyra73255;constitutive=1;rank=3 scaffold_3 . CDS 62373 62430 . - 0 ID=Phyra73255;Parent=Phyra73255;rank=2 scaffold_3 . exon 62373 62430 . - . ID=Phyra73255.2;Parent=Phyra73255;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 62495 62550 . - 0 ID=Phyra73255;Parent=Phyra73255;rank=1 scaffold_3 . exon 62495 62550 . - . ID=Phyra73255.1;Parent=Phyra73255;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 68140 69635 . + . ID=Phyra93565;biotype=protein_coding;external_name=C_scaffold_3000004;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 68140 69635 . + . ID=Phyra93565;Parent=Phyra93565;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 68140 68633 . + 0 ID=Phyra93565;Parent=Phyra93565;rank=1 scaffold_3 . exon 68140 68633 . + . ID=Phyra93565.1;Parent=Phyra93565;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 68965 68991 . + 0 ID=Phyra93565;Parent=Phyra93565;rank=2 scaffold_3 . exon 68965 68991 . + . ID=Phyra93565.2;Parent=Phyra93565;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_3 . CDS 69082 69164 . + 0 ID=Phyra93565;Parent=Phyra93565;rank=3 scaffold_3 . exon 69082 69164 . + . ID=Phyra93565.3;Parent=Phyra93565;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 69225 69334 . + 0 ID=Phyra93565;Parent=Phyra93565;rank=4 scaffold_3 . exon 69225 69334 . + . ID=Phyra93565.4;Parent=Phyra93565;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 69393 69464 . + 0 ID=Phyra93565;Parent=Phyra93565;rank=5 scaffold_3 . exon 69393 69464 . + . ID=Phyra93565.5;Parent=Phyra93565;constitutive=1;rank=5 scaffold_3 . CDS 69531 69635 . + 0 ID=Phyra93565;Parent=Phyra93565;rank=6 scaffold_3 . exon 69531 69635 . + . ID=Phyra93565.6;Parent=Phyra93565;constitutive=1;rank=6 scaffold_3 . repeat_region 71227 71275 . ? . description=trf scaffold_3 ensembl protein_coding_gene 70054 71336 . - . ID=Phyra73257;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000014;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 70054 71336 . - . ID=Phyra73257;Parent=Phyra73257;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 70054 70115 . - 0 ID=Phyra73257;Parent=Phyra73257;rank=4 scaffold_3 . exon 70054 70115 . - . ID=Phyra73257.4;Parent=Phyra73257;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 70236 70260 . - 0 ID=Phyra73257;Parent=Phyra73257;rank=3 scaffold_3 . exon 70236 70260 . - . ID=Phyra73257.3;Parent=Phyra73257;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 70453 70615 . - 0 ID=Phyra73257;Parent=Phyra73257;rank=2 scaffold_3 . exon 70453 70615 . - . ID=Phyra73257.2;Parent=Phyra73257;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 70687 71336 . - 0 ID=Phyra73257;Parent=Phyra73257;rank=1 scaffold_3 . exon 70687 71336 . - . ID=Phyra73257.1;Parent=Phyra73257;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 71473 73722 . + . ID=Phyra73258;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000015;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 71473 73722 . + . ID=Phyra73258;Parent=Phyra73258;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 71473 73722 . + 0 ID=Phyra73258;Parent=Phyra73258;rank=1 scaffold_3 . exon 71473 73722 . + . ID=Phyra73258.1;Parent=Phyra73258;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 73939 75308 . + . ID=Phyra73259;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000016;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 73939 75308 . + . ID=Phyra73259;Parent=Phyra73259;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 73939 74019 . + 0 ID=Phyra73259;Parent=Phyra73259;rank=1 scaffold_3 . exon 73939 74019 . + . ID=Phyra73259.1;Parent=Phyra73259;constitutive=1;rank=1 scaffold_3 . CDS 74092 74394 . + 0 ID=Phyra73259;Parent=Phyra73259;rank=2 scaffold_3 . exon 74092 74394 . + . ID=Phyra73259.2;Parent=Phyra73259;constitutive=1;rank=2 scaffold_3 . CDS 74524 75062 . + 0 ID=Phyra73259;Parent=Phyra73259;rank=3 scaffold_3 . exon 74524 75062 . + . ID=Phyra73259.3;Parent=Phyra73259;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_3 . CDS 75137 75308 . + 0 ID=Phyra73259;Parent=Phyra73259;rank=4 scaffold_3 . exon 75137 75308 . + . ID=Phyra73259.4;Parent=Phyra73259;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 ensembl protein_coding_gene 75434 77122 . - . ID=Phyra73260;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000017;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 75434 77122 . - . ID=Phyra73260;Parent=Phyra73260;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 75434 77122 . - 0 ID=Phyra73260;Parent=Phyra73260;rank=1 scaffold_3 . exon 75434 77122 . - . ID=Phyra73260.1;Parent=Phyra73260;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 77685 79325 . + . ID=Phyra73261;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000018;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 77685 79325 . + . ID=Phyra73261;Parent=Phyra73261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 77685 79325 . + 0 ID=Phyra73261;Parent=Phyra73261;rank=1 scaffold_3 . exon 77685 79325 . + . ID=Phyra73261.1;Parent=Phyra73261;constitutive=1;rank=1 scaffold_3 . biological_region 80636 80637 0.999 + . logic_name=eponine scaffold_3 . biological_region 82413 82416 0.999 - . logic_name=eponine scaffold_3 . biological_region 82607 82610 0.999 - . logic_name=eponine scaffold_3 . biological_region 84643 84643 0.999 - . logic_name=eponine scaffold_3 . biological_region 87323 87324 0.999 + . logic_name=eponine scaffold_3 . repeat_region 88457 88506 . ? . description=dust scaffold_3 ensembl protein_coding_gene 79702 81342 . - . ID=Phyra73262;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000019;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 79702 81342 . - . ID=Phyra73262;Parent=Phyra73262;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 79702 81342 . - 0 ID=Phyra73262;Parent=Phyra73262;rank=1 scaffold_3 . exon 79702 81342 . - . ID=Phyra73262.1;Parent=Phyra73262;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 81905 83593 . + . ID=Phyra73263;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000020;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 81905 83593 . + . ID=Phyra73263;Parent=Phyra73263;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 81905 83593 . + 0 ID=Phyra73263;Parent=Phyra73263;rank=1 scaffold_3 . exon 81905 83593 . + . ID=Phyra73263.1;Parent=Phyra73263;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 83719 84221 . - . ID=Phyra73264;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000021;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 83719 84221 . - . ID=Phyra73264;Parent=Phyra73264;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 83719 83890 . - 0 ID=Phyra73264;Parent=Phyra73264;rank=2 scaffold_3 . exon 83719 83890 . - . ID=Phyra73264.2;Parent=Phyra73264;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 83965 84221 . - 0 ID=Phyra73264;Parent=Phyra73264;rank=1 scaffold_3 . exon 83965 84221 . - . ID=Phyra73264.1;Parent=Phyra73264;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 84462 85729 . + . ID=Phyra73265;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000022;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 84462 85729 . + . ID=Phyra73265;Parent=Phyra73265;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 84462 84902 . + 0 ID=Phyra73265;Parent=Phyra73265;rank=1 scaffold_3 . exon 84462 84902 . + . ID=Phyra73265.1;Parent=Phyra73265;constitutive=1;rank=1 scaffold_3 . CDS 84968 85091 . + 0 ID=Phyra73265;Parent=Phyra73265;rank=2 scaffold_3 . exon 84968 85091 . + . ID=Phyra73265.2;Parent=Phyra73265;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 85122 85729 . + 0 ID=Phyra73265;Parent=Phyra73265;rank=3 scaffold_3 . exon 85122 85729 . + . ID=Phyra73265.3;Parent=Phyra73265;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . repeat_region 91516 91562 . ? . description=trf scaffold_3 . repeat_region 95954 95975 . ? . description=trf scaffold_3 . repeat_region 96339 96366 . ? . description=trf scaffold_3 ensembl protein_coding_gene 98540 100128 . + . ID=Phyra73269;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000026;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 98540 100128 . + . ID=Phyra73269;Parent=Phyra73269;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 98540 98548 . + 0 ID=Phyra73269;Parent=Phyra73269;rank=1 scaffold_3 . exon 98540 98548 . + . ID=Phyra73269.1;Parent=Phyra73269;constitutive=1;rank=1 scaffold_3 . CDS 98620 100128 . + 0 ID=Phyra73269;Parent=Phyra73269;rank=2 scaffold_3 . exon 98620 100128 . + . ID=Phyra73269.2;Parent=Phyra73269;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 89704 95137 . - . ID=Phyra93568;biotype=protein_coding;external_name=C_scaffold_3000007;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 89704 95137 . - . ID=Phyra93568;Parent=Phyra93568;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 89704 90700 . - 0 ID=Phyra93568;Parent=Phyra93568;rank=10 scaffold_3 . exon 89704 90700 . - . ID=Phyra93568.10;Parent=Phyra93568;constitutive=1;ensembl_phase=2;rank=10 scaffold_3 . CDS 90776 90868 . - 0 ID=Phyra93568;Parent=Phyra93568;rank=9 scaffold_3 . exon 90776 90868 . - . ID=Phyra93568.9;Parent=Phyra93568;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_3 . CDS 90977 91137 . - 0 ID=Phyra93568;Parent=Phyra93568;rank=8 scaffold_3 . exon 90977 91137 . - . ID=Phyra93568.8;Parent=Phyra93568;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_3 . CDS 91459 92505 . - 0 ID=Phyra93568;Parent=Phyra93568;rank=7 scaffold_3 . exon 91459 92505 . - . ID=Phyra93568.7;Parent=Phyra93568;constitutive=1;rank=7 scaffold_3 . CDS 92567 92677 . - 0 ID=Phyra93568;Parent=Phyra93568;rank=6 scaffold_3 . exon 92567 92677 . - . ID=Phyra93568.6;Parent=Phyra93568;constitutive=1;rank=6 scaffold_3 . CDS 92753 93338 . - 0 ID=Phyra93568;Parent=Phyra93568;rank=5 scaffold_3 . exon 92753 93338 . - . ID=Phyra93568.5;Parent=Phyra93568;constitutive=1;ensembl_phase=2;rank=5 scaffold_3 . CDS 93580 93800 . - 0 ID=Phyra93568;Parent=Phyra93568;rank=4 scaffold_3 . exon 93580 93800 . - . ID=Phyra93568.4;Parent=Phyra93568;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_3 . CDS 93880 94349 . - 0 ID=Phyra93568;Parent=Phyra93568;rank=3 scaffold_3 . exon 93880 94349 . - . ID=Phyra93568.3;Parent=Phyra93568;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 94374 94724 . - 0 ID=Phyra93568;Parent=Phyra93568;rank=2 scaffold_3 . exon 94374 94724 . - . ID=Phyra93568.2;Parent=Phyra93568;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 94960 95137 . - 0 ID=Phyra93568;Parent=Phyra93568;rank=1 scaffold_3 . exon 94960 95137 . - . ID=Phyra93568.1;Parent=Phyra93568;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . biological_region 99917 99918 0.999 - . logic_name=eponine scaffold_3 . repeat_region 102876 102883 . ? . description=dust scaffold_3 . biological_region 105370 105374 0.999 + . logic_name=eponine scaffold_3 . repeat_region 105808 105821 . ? . description=dust scaffold_3 . biological_region 106302 106304 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 106059 106919 . + . ID=Phyra71095;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000004;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 106059 106919 . + . ID=Phyra71095;Parent=Phyra71095;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 106059 106117 . + 0 ID=Phyra71095;Parent=Phyra71095;rank=1 scaffold_3 . exon 106059 106117 . + . ID=Phyra71095.1;Parent=Phyra71095;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 106193 106919 . + 0 ID=Phyra71095;Parent=Phyra71095;rank=2 scaffold_3 . exon 106193 106919 . + . ID=Phyra71095.2;Parent=Phyra71095;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 ensembl protein_coding_gene 107386 107793 . + . ID=Phyra73272;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000029;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 107386 107793 . + . ID=Phyra73272;Parent=Phyra73272;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 107386 107673 . + 0 ID=Phyra73272;Parent=Phyra73272;rank=1 scaffold_3 . exon 107386 107673 . + . ID=Phyra73272.1;Parent=Phyra73272;constitutive=1;rank=1 scaffold_3 . CDS 107761 107793 . + 0 ID=Phyra73272;Parent=Phyra73272;rank=2 scaffold_3 . exon 107761 107793 . + . ID=Phyra73272.2;Parent=Phyra73272;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 100782 105469 . - . ID=Phyra93569;biotype=protein_coding;external_name=C_scaffold_3000008;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 100782 105469 . - . ID=Phyra93569;Parent=Phyra93569;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 100782 100784 . - 0 ID=Phyra93569;Parent=Phyra93569;rank=12 scaffold_3 . exon 100782 100784 . - . ID=Phyra93569.12;Parent=Phyra93569;constitutive=1;rank=12 scaffold_3 . CDS 100865 101089 . - 0 ID=Phyra93569;Parent=Phyra93569;rank=11 scaffold_3 . exon 100865 101089 . - . ID=Phyra93569.11;Parent=Phyra93569;constitutive=1;rank=11 scaffold_3 . CDS 101132 101479 . - 0 ID=Phyra93569;Parent=Phyra93569;rank=10 scaffold_3 . exon 101132 101479 . - . ID=Phyra93569.10;Parent=Phyra93569;constitutive=1;rank=10 scaffold_3 . CDS 101780 101925 . - 0 ID=Phyra93569;Parent=Phyra93569;rank=9 scaffold_3 . exon 101780 101925 . - . ID=Phyra93569.9;Parent=Phyra93569;constitutive=1;ensembl_phase=1;rank=9 scaffold_3 . CDS 102016 102058 . - 0 ID=Phyra93569;Parent=Phyra93569;rank=8 scaffold_3 . exon 102016 102058 . - . ID=Phyra93569.8;Parent=Phyra93569;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_3 . CDS 102263 102446 . - 0 ID=Phyra93569;Parent=Phyra93569;rank=7 scaffold_3 . exon 102263 102446 . - . ID=Phyra93569.7;Parent=Phyra93569;constitutive=1;ensembl_phase=2;rank=7 scaffold_3 . CDS 103107 103656 . - 0 ID=Phyra93569;Parent=Phyra93569;rank=6 scaffold_3 . exon 103107 103656 . - . ID=Phyra93569.6;Parent=Phyra93569;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_3 . CDS 103906 104004 . - 0 ID=Phyra93569;Parent=Phyra93569;rank=5 scaffold_3 . exon 103906 104004 . - . ID=Phyra93569.5;Parent=Phyra93569;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 104227 104795 . - 0 ID=Phyra93569;Parent=Phyra93569;rank=4 scaffold_3 . exon 104227 104795 . - . ID=Phyra93569.4;Parent=Phyra93569;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 104829 104993 . - 0 ID=Phyra93569;Parent=Phyra93569;rank=3 scaffold_3 . exon 104829 104993 . - . ID=Phyra93569.3;Parent=Phyra93569;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_3 . CDS 105057 105320 . - 0 ID=Phyra93569;Parent=Phyra93569;rank=2 scaffold_3 . exon 105057 105320 . - . ID=Phyra93569.2;Parent=Phyra93569;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_3 . CDS 105348 105469 . - 0 ID=Phyra93569;Parent=Phyra93569;rank=1 scaffold_3 . exon 105348 105469 . - . ID=Phyra93569.1;Parent=Phyra93569;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 111117 112385 . + . ID=Phyra73273;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000030;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 111117 112385 . + . ID=Phyra73273;Parent=Phyra73273;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 111117 112385 . + 0 ID=Phyra73273;Parent=Phyra73273;rank=1 scaffold_3 . exon 111117 112385 . + . ID=Phyra73273.1;Parent=Phyra73273;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 112964 115831 . + . ID=Phyra73274;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000031;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 112964 115831 . + . ID=Phyra73274;Parent=Phyra73274;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 112964 115831 . + 0 ID=Phyra73274;Parent=Phyra73274;rank=1 scaffold_3 . exon 112964 115831 . + . ID=Phyra73274.1;Parent=Phyra73274;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 116666 117403 . + . ID=Phyra73275;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000032;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 116666 117403 . + . ID=Phyra73275;Parent=Phyra73275;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 116666 117403 . + 0 ID=Phyra73275;Parent=Phyra73275;rank=1 scaffold_3 . exon 116666 117403 . + . ID=Phyra73275.1;Parent=Phyra73275;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 117722 118675 . - . ID=Phyra93574;biotype=protein_coding;external_name=C_scaffold_3000013;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 117722 118675 . - . ID=Phyra93574;Parent=Phyra93574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 117722 118155 . - 0 ID=Phyra93574;Parent=Phyra93574;rank=2 scaffold_3 . exon 117722 118155 . - . ID=Phyra93574.2;Parent=Phyra93574;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 118219 118675 . - 0 ID=Phyra93574;Parent=Phyra93574;rank=1 scaffold_3 . exon 118219 118675 . - . ID=Phyra93574.1;Parent=Phyra93574;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . biological_region 119645 119645 0.999 - . logic_name=eponine scaffold_3 . biological_region 120175 120179 0.999 - . logic_name=eponine scaffold_3 . biological_region 120228 120234 0.999 + . logic_name=eponine scaffold_3 . biological_region 120359 120365 0.999 + . logic_name=eponine scaffold_3 . biological_region 120639 120640 0.999 + . logic_name=eponine scaffold_3 . repeat_region 123743 123750 . ? . description=dust scaffold_3 . repeat_region 124046 124065 . ? . description=trf scaffold_3 ensembl protein_coding_gene 119561 120730 . + . ID=Phyra73277;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000034;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 119561 120730 . + . ID=Phyra73277;Parent=Phyra73277;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 119561 120730 . + 0 ID=Phyra73277;Parent=Phyra73277;rank=1 scaffold_3 . exon 119561 120730 . + . ID=Phyra73277.1;Parent=Phyra73277;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 124169 129965 . + . ID=Phyra93575;biotype=protein_coding;external_name=C_scaffold_3000014;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 124169 129965 . + . ID=Phyra93575;Parent=Phyra93575;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 124169 124430 . + 0 ID=Phyra93575;Parent=Phyra93575;rank=1 scaffold_3 . exon 124169 124430 . + . ID=Phyra93575.1;Parent=Phyra93575;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 124599 124845 . + 0 ID=Phyra93575;Parent=Phyra93575;rank=2 scaffold_3 . exon 124599 124845 . + . ID=Phyra93575.2;Parent=Phyra93575;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_3 . CDS 125284 125406 . + 0 ID=Phyra93575;Parent=Phyra93575;rank=3 scaffold_3 . exon 125284 125406 . + . ID=Phyra93575.3;Parent=Phyra93575;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_3 . CDS 125647 126005 . + 0 ID=Phyra93575;Parent=Phyra93575;rank=4 scaffold_3 . exon 125647 126005 . + . ID=Phyra93575.4;Parent=Phyra93575;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 126081 126325 . + 0 ID=Phyra93575;Parent=Phyra93575;rank=5 scaffold_3 . exon 126081 126325 . + . ID=Phyra93575.5;Parent=Phyra93575;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 126396 126954 . + 0 ID=Phyra93575;Parent=Phyra93575;rank=6 scaffold_3 . exon 126396 126954 . + . ID=Phyra93575.6;Parent=Phyra93575;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_3 . CDS 127654 127859 . + 0 ID=Phyra93575;Parent=Phyra93575;rank=7 scaffold_3 . exon 127654 127859 . + . ID=Phyra93575.7;Parent=Phyra93575;constitutive=1;ensembl_phase=1;rank=7 scaffold_3 . CDS 127884 127949 . + 0 ID=Phyra93575;Parent=Phyra93575;rank=8 scaffold_3 . exon 127884 127949 . + . ID=Phyra93575.8;Parent=Phyra93575;constitutive=1;rank=8 scaffold_3 . CDS 128127 128656 . + 0 ID=Phyra93575;Parent=Phyra93575;rank=9 scaffold_3 . exon 128127 128656 . + . ID=Phyra93575.9;Parent=Phyra93575;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_3 . CDS 128723 129599 . + 0 ID=Phyra93575;Parent=Phyra93575;rank=10 scaffold_3 . exon 128723 129599 . + . ID=Phyra93575.10;Parent=Phyra93575;constitutive=1;ensembl_phase=2;rank=10 scaffold_3 . CDS 129627 129965 . + 0 ID=Phyra93575;Parent=Phyra93575;rank=11 scaffold_3 ensembl protein_coding_gene 130155 131684 . - . ID=Phyra73280;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000037;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 130155 131684 . - . ID=Phyra73280;Parent=Phyra73280;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 130155 131684 . - 0 ID=Phyra73280;Parent=Phyra73280;rank=1 scaffold_3 . exon 130155 131684 . - . ID=Phyra73280.1;Parent=Phyra73280;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 134424 134940 . + . ID=Phyra73281;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000038;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 134424 134940 . + . ID=Phyra73281;Parent=Phyra73281;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 134424 134550 . + 0 ID=Phyra73281;Parent=Phyra73281;rank=1 scaffold_3 . exon 134424 134550 . + . ID=Phyra73281.1;Parent=Phyra73281;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 134624 134940 . + 0 ID=Phyra73281;Parent=Phyra73281;rank=2 scaffold_3 . exon 134624 134940 . + . ID=Phyra73281.2;Parent=Phyra73281;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 135062 140069 . - . ID=Phyra73282;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000039;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 135062 140069 . - . ID=Phyra73282;Parent=Phyra73282;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 135062 135082 . - 0 ID=Phyra73282;Parent=Phyra73282;rank=5 scaffold_3 . exon 135062 135082 . - . ID=Phyra73282.5;Parent=Phyra73282;constitutive=1;rank=5 scaffold_3 . CDS 135114 137010 . - 0 ID=Phyra73282;Parent=Phyra73282;rank=4 scaffold_3 . exon 135114 137010 . - . ID=Phyra73282.4;Parent=Phyra73282;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 137131 137315 . - 0 ID=Phyra73282;Parent=Phyra73282;rank=3 scaffold_3 . exon 137131 137315 . - . ID=Phyra73282.3;Parent=Phyra73282;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_3 . CDS 137505 137650 . - 0 ID=Phyra73282;Parent=Phyra73282;rank=2 scaffold_3 . exon 137505 137650 . - . ID=Phyra73282.2;Parent=Phyra73282;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 137957 140069 . - 0 ID=Phyra73282;Parent=Phyra73282;rank=1 scaffold_3 . exon 137957 140069 . - . ID=Phyra73282.1;Parent=Phyra73282;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . exon 129627 129965 . + . ID=Phyra93575.11;Parent=Phyra93575;constitutive=1;rank=11 scaffold_3 . biological_region 140538 140540 0.999 + . logic_name=eponine scaffold_3 . biological_region 140807 140809 0.999 + . logic_name=eponine scaffold_3 . biological_region 141222 141224 0.999 + . logic_name=eponine scaffold_3 . biological_region 141261 141263 0.999 + . logic_name=eponine scaffold_3 . biological_region 141275 141280 0.999 - . logic_name=eponine scaffold_3 . biological_region 142861 142865 0.999 - . logic_name=eponine scaffold_3 . repeat_region 144315 144352 . ? . description=trf scaffold_3 . biological_region 145247 145256 0.999 - . logic_name=eponine scaffold_3 . repeat_region 145276 145283 . ? . description=dust scaffold_3 . biological_region 145317 145320 0.999 - . logic_name=eponine scaffold_3 . repeat_region 145615 145634 . ? . description=trf scaffold_3 . repeat_region 145615 145634 . ? . description=dust scaffold_3 . repeat_region 145823 145847 . ? . description=trf scaffold_3 . repeat_region 145823 145847 . ? . description=dust scaffold_3 . biological_region 146053 146056 0.999 - . logic_name=eponine scaffold_3 . biological_region 146391 146392 0.999 - . logic_name=eponine scaffold_3 . repeat_region 147174 147319 . ? . description=dust scaffold_3 . biological_region 148017 148018 0.999 + . logic_name=eponine scaffold_3 . biological_region 148353 148356 0.999 + . logic_name=eponine scaffold_3 . repeat_region 148561 148585 . ? . description=trf scaffold_3 . repeat_region 148561 148585 . ? . description=dust scaffold_3 . repeat_region 148774 148793 . ? . description=trf scaffold_3 . repeat_region 148774 148793 . ? . description=dust scaffold_3 . biological_region 149088 149091 0.999 + . logic_name=eponine scaffold_3 . repeat_region 149124 149131 . ? . description=dust scaffold_3 . biological_region 149152 149161 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 140642 141352 . + . ID=Phyra71096;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000005;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 140642 141352 . + . ID=Phyra71096;Parent=Phyra71096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 140642 141352 . + 0 ID=Phyra71096;Parent=Phyra71096;rank=1 scaffold_3 . exon 140642 141352 . + . ID=Phyra71096.1;Parent=Phyra71096;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 142188 144179 . + . ID=Phyra73284;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000041;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 142188 144179 . + . ID=Phyra73284;Parent=Phyra73284;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 142188 142307 . + 0 ID=Phyra73284;Parent=Phyra73284;rank=1 scaffold_3 . exon 142188 142307 . + . ID=Phyra73284.1;Parent=Phyra73284;constitutive=1;rank=1 scaffold_3 . CDS 142461 144179 . + 0 ID=Phyra73284;Parent=Phyra73284;rank=2 scaffold_3 . exon 142461 144179 . + . ID=Phyra73284.2;Parent=Phyra73284;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 145680 146072 . + . ID=Phyra73285;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000042;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 145680 146072 . + . ID=Phyra73285;Parent=Phyra73285;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 145680 146072 . + 0 ID=Phyra73285;Parent=Phyra73285;rank=1 scaffold_3 . exon 145680 146072 . + . ID=Phyra73285.1;Parent=Phyra73285;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 148336 148728 . - . ID=Phyra73286;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000043;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 148336 148728 . - . ID=Phyra73286;Parent=Phyra73286;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 148336 148728 . - 0 ID=Phyra73286;Parent=Phyra73286;rank=1 scaffold_3 . exon 148336 148728 . - . ID=Phyra73286.1;Parent=Phyra73286;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 151941 154905 . - . ID=Phyra73288;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000045;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 151941 154905 . - . ID=Phyra73288;Parent=Phyra73288;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 151941 151963 . - 0 ID=Phyra73288;Parent=Phyra73288;rank=3 scaffold_3 . exon 151941 151963 . - . ID=Phyra73288.3;Parent=Phyra73288;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 151986 152808 . - 0 ID=Phyra73288;Parent=Phyra73288;rank=2 scaffold_3 . exon 151986 152808 . - . ID=Phyra73288.2;Parent=Phyra73288;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 153298 154905 . - 0 ID=Phyra73288;Parent=Phyra73288;rank=1 scaffold_3 . exon 153298 154905 . - . ID=Phyra73288.1;Parent=Phyra73288;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 155446 157813 . - . ID=Phyra73289;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000046;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 155446 157813 . - . ID=Phyra73289;Parent=Phyra73289;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 155446 157017 . - 0 ID=Phyra73289;Parent=Phyra73289;rank=3 scaffold_3 . exon 155446 157017 . - . ID=Phyra73289.3;Parent=Phyra73289;constitutive=1;rank=3 scaffold_3 . CDS 157091 157201 . - 0 ID=Phyra73289;Parent=Phyra73289;rank=2 scaffold_3 . exon 157091 157201 . - . ID=Phyra73289.2;Parent=Phyra73289;constitutive=1;rank=2 scaffold_3 . CDS 157274 157813 . - 0 ID=Phyra73289;Parent=Phyra73289;rank=1 scaffold_3 . exon 157274 157813 . - . ID=Phyra73289.1;Parent=Phyra73289;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 150996 151695 . + . ID=Phyra93580;biotype=protein_coding;external_name=C_scaffold_3000019;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 150996 151695 . + . ID=Phyra93580;Parent=Phyra93580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 150996 151448 . + 0 ID=Phyra93580;Parent=Phyra93580;rank=1 scaffold_3 . exon 150996 151448 . + . ID=Phyra93580.1;Parent=Phyra93580;constitutive=1;rank=1 scaffold_3 . CDS 151645 151695 . + 0 ID=Phyra93580;Parent=Phyra93580;rank=2 scaffold_3 . exon 151645 151695 . + . ID=Phyra93580.2;Parent=Phyra93580;constitutive=1;rank=2 scaffold_3 . biological_region 159572 159575 0.999 - . logic_name=eponine scaffold_3 . biological_region 160427 160431 0.999 - . logic_name=eponine scaffold_3 . repeat_region 163516 163552 . ? . description=trf scaffold_3 . repeat_region 166267 166286 . ? . description=trf scaffold_3 . repeat_region 166267 166286 . ? . description=dust scaffold_3 . repeat_region 166731 166778 . ? . description=trf scaffold_3 . repeat_region 167575 167622 . ? . description=trf scaffold_3 . repeat_region 167940 167981 . ? . description=trf scaffold_3 ensembl protein_coding_gene 159968 160984 . + . ID=Phyra73290;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000047;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 159968 160984 . + . ID=Phyra73290;Parent=Phyra73290;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 159968 160984 . + 0 ID=Phyra73290;Parent=Phyra73290;rank=1 scaffold_3 . exon 159968 160984 . + . ID=Phyra73290.1;Parent=Phyra73290;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 161228 162787 . - . ID=Phyra73291;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000048;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 161228 162787 . - . ID=Phyra73291;Parent=Phyra73291;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 161228 162787 . - 0 ID=Phyra73291;Parent=Phyra73291;rank=1 scaffold_3 . exon 161228 162787 . - . ID=Phyra73291.1;Parent=Phyra73291;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 165311 166196 . - . ID=Phyra73292;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000049;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 165311 166196 . - . ID=Phyra73292;Parent=Phyra73292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 165311 165825 . - 0 ID=Phyra73292;Parent=Phyra73292;rank=2 scaffold_3 . exon 165311 165825 . - . ID=Phyra73292.2;Parent=Phyra73292;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 166163 166196 . - 0 ID=Phyra73292;Parent=Phyra73292;rank=1 scaffold_3 . exon 166163 166196 . - . ID=Phyra73292.1;Parent=Phyra73292;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 166701 167762 . + . ID=Phyra73293;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000050;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 166701 167762 . + . ID=Phyra73293;Parent=Phyra73293;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 166701 167762 . + 0 ID=Phyra73293;Parent=Phyra73293;rank=1 scaffold_3 . exon 166701 167762 . + . ID=Phyra73293.1;Parent=Phyra73293;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 170291 172042 . + . ID=Phyra73294;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000051;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 170291 172042 . + . ID=Phyra73294;Parent=Phyra73294;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 170291 170983 . + 0 ID=Phyra73294;Parent=Phyra73294;rank=1 scaffold_3 . exon 170291 170983 . + . ID=Phyra73294.1;Parent=Phyra73294;constitutive=1;rank=1 scaffold_3 . CDS 171332 171838 . + 0 ID=Phyra73294;Parent=Phyra73294;rank=2 scaffold_3 . exon 171332 171838 . + . ID=Phyra73294.2;Parent=Phyra73294;constitutive=1;rank=2 scaffold_3 . CDS 172034 172042 . + 0 ID=Phyra73294;Parent=Phyra73294;rank=3 scaffold_3 . exon 172034 172042 . + . ID=Phyra73294.3;Parent=Phyra73294;constitutive=1;rank=3 scaffold_3 ensembl protein_coding_gene 174386 182468 . + . ID=Phyra73295;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000052;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 174386 182468 . + . ID=Phyra73295;Parent=Phyra73295;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 174386 175078 . + 0 ID=Phyra73295;Parent=Phyra73295;rank=1 scaffold_3 . exon 174386 175078 . + . ID=Phyra73295.1;Parent=Phyra73295;constitutive=1;rank=1 scaffold_3 . CDS 175427 176037 . + 0 ID=Phyra73295;Parent=Phyra73295;rank=2 scaffold_3 . exon 175427 176037 . + . ID=Phyra73295.2;Parent=Phyra73295;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 176201 182468 . + 0 ID=Phyra73295;Parent=Phyra73295;rank=3 scaffold_3 . exon 176201 182468 . + . ID=Phyra73295.3;Parent=Phyra73295;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . biological_region 184674 184674 0.999 + . logic_name=eponine scaffold_3 . biological_region 184702 184703 0.999 + . logic_name=eponine scaffold_3 . biological_region 185333 185344 0.999 + . logic_name=eponine scaffold_3 . biological_region 185403 185405 0.999 + . logic_name=eponine scaffold_3 . biological_region 185447 185453 0.999 - . logic_name=eponine scaffold_3 . biological_region 185477 185477 0.999 - . logic_name=eponine scaffold_3 . biological_region 185504 185509 0.999 + . logic_name=eponine scaffold_3 . repeat_region 186149 186184 . ? . description=trf scaffold_3 ensembl protein_coding_gene 182665 184908 . - . ID=Phyra73296;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000053;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 182665 184908 . - . ID=Phyra73296;Parent=Phyra73296;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 182665 184908 . - 0 ID=Phyra73296;Parent=Phyra73296;rank=1 scaffold_3 . exon 182665 184908 . - . ID=Phyra73296.1;Parent=Phyra73296;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 185336 185695 . - . ID=Phyra73297;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000054;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 185336 185695 . - . ID=Phyra73297;Parent=Phyra73297;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 185336 185695 . - 0 ID=Phyra73297;Parent=Phyra73297;rank=1 scaffold_3 . exon 185336 185695 . - . ID=Phyra73297.1;Parent=Phyra73297;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 186218 186735 . + . ID=Phyra73298;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000055;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 186218 186735 . + . ID=Phyra73298;Parent=Phyra73298;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 186218 186541 . + 0 ID=Phyra73298;Parent=Phyra73298;rank=1 scaffold_3 . exon 186218 186541 . + . ID=Phyra73298.1;Parent=Phyra73298;constitutive=1;rank=1 scaffold_3 . CDS 186655 186735 . + 0 ID=Phyra73298;Parent=Phyra73298;rank=2 scaffold_3 . exon 186655 186735 . + . ID=Phyra73298.2;Parent=Phyra73298;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 190124 209484 . + . ID=Phyra93584;biotype=protein_coding;external_name=C_scaffold_3000023;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 190124 209484 . + . ID=Phyra93584;Parent=Phyra93584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . exon 190124 190523 . + . ID=Phyra93584.1;Parent=Phyra93584;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 190125 190523 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=1 scaffold_3 . CDS 190601 190675 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=2 scaffold_3 . exon 190601 190675 . + . ID=Phyra93584.2;Parent=Phyra93584;constitutive=1;rank=2 scaffold_3 . CDS 190787 190922 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=3 scaffold_3 . exon 190787 190922 . + . ID=Phyra93584.3;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 191148 191924 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=4 scaffold_3 . exon 191148 191924 . + . ID=Phyra93584.4;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 192087 192506 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=5 scaffold_3 . exon 192087 192506 . + . ID=Phyra93584.5;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 192564 192898 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=6 scaffold_3 . exon 192564 192898 . + . ID=Phyra93584.6;Parent=Phyra93584;constitutive=1;ensembl_phase=1;rank=6 scaffold_3 . CDS 193025 193217 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=7 scaffold_3 . exon 193025 193217 . + . ID=Phyra93584.7;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_3 . CDS 193362 193649 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=8 scaffold_3 . exon 193362 193649 . + . ID=Phyra93584.8;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_3 . CDS 193770 193861 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=9 scaffold_3 . exon 193770 193861 . + . ID=Phyra93584.9;Parent=Phyra93584;constitutive=1;ensembl_phase=1;rank=9 scaffold_3 . CDS 193988 194054 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=10 scaffold_3 . exon 193988 194054 . + . ID=Phyra93584.10;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_3 . CDS 194124 194203 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=11 scaffold_3 . exon 194124 194203 . + . ID=Phyra93584.11;Parent=Phyra93584;constitutive=1;ensembl_phase=1;rank=11 scaffold_3 . CDS 194227 194318 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=12 scaffold_3 . exon 194227 194318 . + . ID=Phyra93584.12;Parent=Phyra93584;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_3 . CDS 194354 194502 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=13 scaffold_3 . exon 194354 194502 . + . ID=Phyra93584.13;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=13 scaffold_3 . CDS 194526 194930 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=14 scaffold_3 . exon 194526 194930 . + . ID=Phyra93584.14;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_3 . CDS 195051 195092 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=15 scaffold_3 . exon 195051 195092 . + . ID=Phyra93584.15;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=15 scaffold_3 . CDS 195198 195359 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=16 scaffold_3 . exon 195198 195359 . + . ID=Phyra93584.16;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=16 scaffold_3 . CDS 195444 195546 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=17 scaffold_3 . exon 195444 195546 . + . ID=Phyra93584.17;Parent=Phyra93584;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=17 scaffold_3 . CDS 195934 196193 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=18 scaffold_3 . exon 195934 196193 . + . ID=Phyra93584.18;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=18 scaffold_3 . CDS 196761 196912 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=19 scaffold_3 . exon 196761 196912 . + . ID=Phyra93584.19;Parent=Phyra93584;constitutive=1;ensembl_phase=1;rank=19 scaffold_3 . CDS 196941 196959 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=20 scaffold_3 . exon 196941 196959 . + . ID=Phyra93584.20;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;rank=20 scaffold_3 . CDS 197229 197846 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=21 scaffold_3 . exon 197229 197846 . + . ID=Phyra93584.21;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=21 scaffold_3 . CDS 197979 198254 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=22 scaffold_3 . exon 197979 198254 . + . ID=Phyra93584.22;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=22 scaffold_3 . CDS 198363 198703 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=23 scaffold_3 . exon 198363 198703 . + . ID=Phyra93584.23;Parent=Phyra93584;constitutive=1;ensembl_phase=1;rank=23 scaffold_3 . CDS 198734 199204 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=24 scaffold_3 . exon 198734 199204 . + . ID=Phyra93584.24;Parent=Phyra93584;constitutive=1;rank=24 scaffold_3 . CDS 199310 199426 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=25 scaffold_3 . CDS 199469 199859 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=26 scaffold_3 . CDS 199884 200087 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=27 scaffold_3 . CDS 200112 200263 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=28 scaffold_3 . CDS 200345 200612 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=29 scaffold_3 . CDS 201099 202163 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=30 scaffold_3 . CDS 202388 203182 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=31 scaffold_3 . CDS 203342 203791 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=32 scaffold_3 . CDS 203849 204585 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=33 scaffold_3 . CDS 204616 204796 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=34 scaffold_3 . CDS 204821 205030 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=35 scaffold_3 . CDS 205103 205819 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=36 scaffold_3 . CDS 205859 207005 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=37 scaffold_3 . CDS 207099 207345 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=38 scaffold_3 . CDS 207370 207534 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=39 scaffold_3 . CDS 207556 208068 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=40 scaffold_3 . CDS 208093 208336 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=41 scaffold_3 . CDS 208391 208539 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=42 scaffold_3 . CDS 208591 208758 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=43 scaffold_3 . CDS 209119 209484 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=44 scaffold_3 . biological_region 202994 202999 0.999 - . logic_name=eponine scaffold_3 . biological_region 206596 206597 0.999 + . logic_name=eponine scaffold_3 . exon 199310 199426 . + . ID=Phyra93584.25;Parent=Phyra93584;constitutive=1;rank=25 scaffold_3 . exon 199469 199859 . + . ID=Phyra93584.26;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;rank=26 scaffold_3 . exon 199884 200087 . + . ID=Phyra93584.27;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=27 scaffold_3 . exon 200112 200263 . + . ID=Phyra93584.28;Parent=Phyra93584;constitutive=1;ensembl_phase=1;rank=28 scaffold_3 . exon 200345 200612 . + . ID=Phyra93584.29;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;rank=29 scaffold_3 . exon 201099 202163 . + . ID=Phyra93584.30;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=30 scaffold_3 . exon 202388 203182 . + . ID=Phyra93584.31;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=31 scaffold_3 . exon 203342 203791 . + . ID=Phyra93584.32;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=32 scaffold_3 . exon 203849 204585 . + . ID=Phyra93584.33;Parent=Phyra93584;constitutive=1;ensembl_phase=1;rank=33 scaffold_3 . exon 204616 204796 . + . ID=Phyra93584.34;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;rank=34 scaffold_3 . exon 204821 205030 . + . ID=Phyra93584.35;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=35 scaffold_3 . exon 205103 205819 . + . ID=Phyra93584.36;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=36 scaffold_3 . exon 205859 207005 . + . ID=Phyra93584.37;Parent=Phyra93584;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=37 scaffold_3 . exon 207099 207345 . + . ID=Phyra93584.38;Parent=Phyra93584;constitutive=1;ensembl_phase=2;rank=38 scaffold_3 . exon 207370 207534 . + . ID=Phyra93584.39;Parent=Phyra93584;constitutive=1;rank=39 scaffold_3 . exon 207556 208068 . + . ID=Phyra93584.40;Parent=Phyra93584;constitutive=1;rank=40 scaffold_3 . exon 208093 208336 . + . ID=Phyra93584.41;Parent=Phyra93584;constitutive=1;ensembl_end_phase=1;rank=41 scaffold_3 . exon 208391 208539 . + . ID=Phyra93584.42;Parent=Phyra93584;constitutive=1;ensembl_phase=1;rank=42 scaffold_3 . exon 208591 208758 . + . ID=Phyra93584.43;Parent=Phyra93584;constitutive=1;rank=43 scaffold_3 . exon 209119 209484 . + . ID=Phyra93584.44;Parent=Phyra93584;constitutive=1;rank=44 scaffold_3 . repeat_region 216413 216442 . ? . description=trf scaffold_3 . repeat_region 216786 216867 . ? . description=trf scaffold_3 ensembl protein_coding_gene 212014 216252 . + . ID=Phyra73301;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000058;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 212014 216252 . + . ID=Phyra73301;Parent=Phyra73301;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 212014 213094 . + 0 ID=Phyra73301;Parent=Phyra73301;rank=1 scaffold_3 . exon 212014 213094 . + . ID=Phyra73301.1;Parent=Phyra73301;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 213512 216252 . + 0 ID=Phyra73301;Parent=Phyra73301;rank=2 scaffold_3 . exon 213512 216252 . + . ID=Phyra73301.2;Parent=Phyra73301;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 216515 217096 . + . ID=Phyra73302;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000059;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 216515 217096 . + . ID=Phyra73302;Parent=Phyra73302;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 216515 217096 . + 0 ID=Phyra73302;Parent=Phyra73302;rank=1 scaffold_3 . exon 216515 217096 . + . ID=Phyra73302.1;Parent=Phyra73302;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 190124 209484 . + . ID=Phyra93584;biotype=protein_coding;external_name=C_scaffold_3000023;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 190124 209484 . + . ID=Phyra93584;Parent=Phyra93584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 190125 190523 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=1 scaffold_3 . CDS 190601 190675 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=2 scaffold_3 . CDS 190787 190922 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=3 scaffold_3 . CDS 191148 191924 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=4 scaffold_3 . CDS 192087 192506 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=5 scaffold_3 . CDS 192564 192898 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=6 scaffold_3 . CDS 193025 193217 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=7 scaffold_3 . CDS 193362 193649 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=8 scaffold_3 . CDS 193770 193861 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=9 scaffold_3 . CDS 193988 194054 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=10 scaffold_3 . CDS 194124 194203 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=11 scaffold_3 . CDS 194227 194318 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=12 scaffold_3 . CDS 194354 194502 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=13 scaffold_3 . CDS 194526 194930 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=14 scaffold_3 . CDS 195051 195092 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=15 scaffold_3 . CDS 195198 195359 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=16 scaffold_3 . CDS 195444 195546 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=17 scaffold_3 . CDS 195934 196193 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=18 scaffold_3 . CDS 196761 196912 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=19 scaffold_3 . CDS 196941 196959 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=20 scaffold_3 . CDS 197229 197846 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=21 scaffold_3 . CDS 197979 198254 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=22 scaffold_3 . CDS 198363 198703 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=23 scaffold_3 . CDS 198734 199204 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=24 scaffold_3 . CDS 199310 199426 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=25 scaffold_3 . CDS 199469 199859 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=26 scaffold_3 . CDS 199884 200087 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=27 scaffold_3 . CDS 200112 200263 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=28 scaffold_3 . CDS 200345 200612 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=29 scaffold_3 . CDS 201099 202163 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=30 scaffold_3 . CDS 202388 203182 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=31 scaffold_3 . CDS 203342 203791 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=32 scaffold_3 . CDS 203849 204585 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=33 scaffold_3 . CDS 204616 204796 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=34 scaffold_3 . CDS 204821 205030 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=35 scaffold_3 . CDS 205103 205819 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=36 scaffold_3 . CDS 205859 207005 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=37 scaffold_3 . CDS 207099 207345 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=38 scaffold_3 . CDS 207370 207534 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=39 scaffold_3 . CDS 207556 208068 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=40 scaffold_3 . CDS 208093 208336 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=41 scaffold_3 . CDS 208391 208539 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=42 scaffold_3 . CDS 208591 208758 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=43 scaffold_3 . CDS 209119 209484 . + 0 ID=Phyra93584;Parent=Phyra93584;rank=44 scaffold_3 ensembl protein_coding_gene 209619 210503 . - . ID=Phyra93585;biotype=protein_coding;external_name=C_scaffold_3000024;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 209619 210503 . - . ID=Phyra93585;Parent=Phyra93585;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 209619 210215 . - 0 ID=Phyra93585;Parent=Phyra93585;rank=2 scaffold_3 . exon 209619 210215 . - . ID=Phyra93585.2;Parent=Phyra93585;constitutive=1;rank=2 scaffold_3 . CDS 210276 210503 . - 0 ID=Phyra93585;Parent=Phyra93585;rank=1 scaffold_3 . exon 210276 210503 . - . ID=Phyra93585.1;Parent=Phyra93585;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 219101 220159 . + . ID=Phyra93588;biotype=protein_coding;external_name=C_scaffold_3000027;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 219101 220159 . + . ID=Phyra93588;Parent=Phyra93588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 219101 219575 . + 0 ID=Phyra93588;Parent=Phyra93588;rank=1 scaffold_3 . exon 219101 219575 . + . ID=Phyra93588.1;Parent=Phyra93588;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 219612 220159 . + 0 ID=Phyra93588;Parent=Phyra93588;rank=2 scaffold_3 . biological_region 219775 219778 0.999 - . logic_name=eponine scaffold_3 . biological_region 220070 220075 0.999 + . logic_name=eponine scaffold_3 . biological_region 228006 228011 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 220626 225425 . + . ID=Phyra73304;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000061;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 220626 225425 . + . ID=Phyra73304;Parent=Phyra73304;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 220626 221634 . + 0 ID=Phyra73304;Parent=Phyra73304;rank=1 scaffold_3 . exon 220626 221634 . + . ID=Phyra73304.1;Parent=Phyra73304;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 221683 222148 . + 0 ID=Phyra73304;Parent=Phyra73304;rank=2 scaffold_3 . exon 221683 222148 . + . ID=Phyra73304.2;Parent=Phyra73304;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_3 . CDS 222212 222333 . + 0 ID=Phyra73304;Parent=Phyra73304;rank=3 scaffold_3 . exon 222212 222333 . + . ID=Phyra73304.3;Parent=Phyra73304;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 222439 225425 . + 0 ID=Phyra73304;Parent=Phyra73304;rank=4 scaffold_3 . exon 222439 225425 . + . ID=Phyra73304.4;Parent=Phyra73304;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 ensembl protein_coding_gene 226433 227344 . - . ID=Phyra73305;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000062;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 226433 227344 . - . ID=Phyra73305;Parent=Phyra73305;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 226433 227344 . - 0 ID=Phyra73305;Parent=Phyra73305;rank=1 scaffold_3 . exon 226433 227344 . - . ID=Phyra73305.1;Parent=Phyra73305;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 228743 229804 . + . ID=Phyra73306;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000063;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 228743 229804 . + . ID=Phyra73306;Parent=Phyra73306;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 228743 229804 . + 0 ID=Phyra73306;Parent=Phyra73306;rank=1 scaffold_3 . exon 228743 229804 . + . ID=Phyra73306.1;Parent=Phyra73306;constitutive=1;rank=1 scaffold_3 . exon 219612 220159 . + . ID=Phyra93588.2;Parent=Phyra93588;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . repeat_region 229654 229672 . ? . description=dust scaffold_3 . repeat_region 230301 230317 . ? . description=dust scaffold_3 . repeat_region 232855 232867 . ? . description=dust scaffold_3 . repeat_region 237436 237448 . ? . description=dust scaffold_3 ensembl protein_coding_gene 235547 237056 . - . ID=Phyra46668;biotype=protein_coding;external_name=gwEuk.3.6.1;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 235547 237056 . - . ID=Phyra46668;Parent=Phyra46668;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 235547 235894 . - 0 ID=Phyra46668;Parent=Phyra46668;rank=4 scaffold_3 . exon 235547 235894 . - . ID=Phyra46668.4;Parent=Phyra46668;constitutive=1;rank=4 scaffold_3 . CDS 235994 236488 . - 0 ID=Phyra46668;Parent=Phyra46668;rank=3 scaffold_3 . exon 235994 236488 . - . ID=Phyra46668.3;Parent=Phyra46668;constitutive=1;rank=3 scaffold_3 . CDS 236561 236647 . - 0 ID=Phyra46668;Parent=Phyra46668;rank=2 scaffold_3 . exon 236561 236647 . - . ID=Phyra46668.2;Parent=Phyra46668;constitutive=1;rank=2 scaffold_3 . CDS 236742 237056 . - 0 ID=Phyra46668;Parent=Phyra46668;rank=1 scaffold_3 . exon 236742 237056 . - . ID=Phyra46668.1;Parent=Phyra46668;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 233226 234765 . + . ID=Phyra71097;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000006;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 233226 234765 . + . ID=Phyra71097;Parent=Phyra71097;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 233226 233561 . + 0 ID=Phyra71097;Parent=Phyra71097;rank=1 scaffold_3 . exon 233226 233561 . + . ID=Phyra71097.1;Parent=Phyra71097;constitutive=1;rank=1 scaffold_3 . CDS 233683 233742 . + 0 ID=Phyra71097;Parent=Phyra71097;rank=2 scaffold_3 . exon 233683 233742 . + . ID=Phyra71097.2;Parent=Phyra71097;constitutive=1;rank=2 scaffold_3 . CDS 233815 234309 . + 0 ID=Phyra71097;Parent=Phyra71097;rank=3 scaffold_3 . exon 233815 234309 . + . ID=Phyra71097.3;Parent=Phyra71097;constitutive=1;rank=3 scaffold_3 . CDS 234409 234765 . + 0 ID=Phyra71097;Parent=Phyra71097;rank=4 scaffold_3 . exon 234409 234765 . + . ID=Phyra71097.4;Parent=Phyra71097;constitutive=1;rank=4 scaffold_3 ensembl protein_coding_gene 230707 232538 . - . ID=Phyra73307;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000064;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 230707 232538 . - . ID=Phyra73307;Parent=Phyra73307;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 230707 230967 . - 0 ID=Phyra73307;Parent=Phyra73307;rank=2 scaffold_3 . exon 230707 230967 . - . ID=Phyra73307.2;Parent=Phyra73307;constitutive=1;rank=2 scaffold_3 . CDS 231039 232538 . - 0 ID=Phyra73307;Parent=Phyra73307;rank=1 scaffold_3 . exon 231039 232538 . - . ID=Phyra73307.1;Parent=Phyra73307;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 237624 238319 . - . ID=Phyra73310;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000067;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 237624 238319 . - . ID=Phyra73310;Parent=Phyra73310;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 237624 238319 . - 0 ID=Phyra73310;Parent=Phyra73310;rank=1 scaffold_3 . exon 237624 238319 . - . ID=Phyra73310.1;Parent=Phyra73310;constitutive=1;rank=1 scaffold_3 . biological_region 239400 239402 0.999 + . logic_name=eponine scaffold_3 . biological_region 239729 239731 0.999 + . logic_name=eponine scaffold_3 . biological_region 240283 240288 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 239438 242223 . + . ID=Phyra93591;biotype=protein_coding;external_name=C_scaffold_3000030;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 239438 242223 . + . ID=Phyra93591;Parent=Phyra93591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 239438 239689 . + 0 ID=Phyra93591;Parent=Phyra93591;rank=1 scaffold_3 . exon 239438 239689 . + . ID=Phyra93591.1;Parent=Phyra93591;constitutive=1;rank=1 scaffold_3 . CDS 239717 239987 . + 0 ID=Phyra93591;Parent=Phyra93591;rank=2 scaffold_3 . exon 239717 239987 . + . ID=Phyra93591.2;Parent=Phyra93591;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 240057 240271 . + 0 ID=Phyra93591;Parent=Phyra93591;rank=3 scaffold_3 . exon 240057 240271 . + . ID=Phyra93591.3;Parent=Phyra93591;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 240305 241238 . + 0 ID=Phyra93591;Parent=Phyra93591;rank=4 scaffold_3 . exon 240305 241238 . + . ID=Phyra93591.4;Parent=Phyra93591;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_3 . CDS 241293 241484 . + 0 ID=Phyra93591;Parent=Phyra93591;rank=5 scaffold_3 . exon 241293 241484 . + . ID=Phyra93591.5;Parent=Phyra93591;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 241545 241696 . + 0 ID=Phyra93591;Parent=Phyra93591;rank=6 scaffold_3 . exon 241545 241696 . + . ID=Phyra93591.6;Parent=Phyra93591;constitutive=1;ensembl_phase=1;rank=6 scaffold_3 . CDS 241826 241904 . + 0 ID=Phyra93591;Parent=Phyra93591;rank=7 scaffold_3 . exon 241826 241904 . + . ID=Phyra93591.7;Parent=Phyra93591;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_3 . CDS 242028 242107 . + 0 ID=Phyra93591;Parent=Phyra93591;rank=8 scaffold_3 . exon 242028 242107 . + . ID=Phyra93591.8;Parent=Phyra93591;constitutive=1;ensembl_phase=1;rank=8 scaffold_3 . CDS 242191 242223 . + 0 ID=Phyra93591;Parent=Phyra93591;rank=9 scaffold_3 . exon 242191 242223 . + . ID=Phyra93591.9;Parent=Phyra93591;constitutive=1;rank=9 scaffold_3 ensembl protein_coding_gene 256385 258458 . - . ID=Phyra73313;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000070;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 256385 258458 . - . ID=Phyra73313;Parent=Phyra73313;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 256385 256991 . - 0 ID=Phyra73313;Parent=Phyra73313;rank=6 scaffold_3 . exon 256385 256991 . - . ID=Phyra73313.6;Parent=Phyra73313;constitutive=1;ensembl_phase=2;rank=6 scaffold_3 . CDS 257065 257218 . - 0 ID=Phyra73313;Parent=Phyra73313;rank=5 scaffold_3 . exon 257065 257218 . - . ID=Phyra73313.5;Parent=Phyra73313;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_3 . CDS 257246 257374 . - 0 ID=Phyra73313;Parent=Phyra73313;rank=4 scaffold_3 . exon 257246 257374 . - . ID=Phyra73313.4;Parent=Phyra73313;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 257448 257643 . - 0 ID=Phyra73313;Parent=Phyra73313;rank=3 scaffold_3 . exon 257448 257643 . - . ID=Phyra73313.3;Parent=Phyra73313;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 257726 258424 . - 0 ID=Phyra73313;Parent=Phyra73313;rank=2 scaffold_3 . exon 257726 258424 . - . ID=Phyra73313.2;Parent=Phyra73313;constitutive=1;rank=2 scaffold_3 . CDS 258447 258458 . - 0 ID=Phyra73313;Parent=Phyra73313;rank=1 scaffold_3 . exon 258447 258458 . - . ID=Phyra73313.1;Parent=Phyra73313;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 249788 256297 . + . ID=Phyra93592;biotype=protein_coding;external_name=C_scaffold_3000031;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 249788 256297 . + . ID=Phyra93592;Parent=Phyra93592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 249788 250004 . + 0 ID=Phyra93592;Parent=Phyra93592;rank=1 scaffold_3 . exon 249788 250004 . + . ID=Phyra93592.1;Parent=Phyra93592;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 250293 250513 . + 0 ID=Phyra93592;Parent=Phyra93592;rank=2 scaffold_3 . exon 250293 250513 . + . ID=Phyra93592.2;Parent=Phyra93592;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 250685 251132 . + 0 ID=Phyra93592;Parent=Phyra93592;rank=3 scaffold_3 . exon 250685 251132 . + . ID=Phyra93592.3;Parent=Phyra93592;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 251361 251549 . + 0 ID=Phyra93592;Parent=Phyra93592;rank=4 scaffold_3 . exon 251361 251549 . + . ID=Phyra93592.4;Parent=Phyra93592;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 251631 252073 . + 0 ID=Phyra93592;Parent=Phyra93592;rank=5 scaffold_3 . exon 251631 252073 . + . ID=Phyra93592.5;Parent=Phyra93592;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 252767 252884 . + 0 ID=Phyra93592;Parent=Phyra93592;rank=6 scaffold_3 . exon 252767 252884 . + . ID=Phyra93592.6;Parent=Phyra93592;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_3 . CDS 253005 253112 . + 0 ID=Phyra93592;Parent=Phyra93592;rank=7 scaffold_3 . exon 253005 253112 . + . ID=Phyra93592.7;Parent=Phyra93592;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_3 . CDS 253263 253376 . + 0 ID=Phyra93592;Parent=Phyra93592;rank=8 scaffold_3 . exon 253263 253376 . + . ID=Phyra93592.8;Parent=Phyra93592;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_3 . CDS 253578 253609 . + 0 ID=Phyra93592;Parent=Phyra93592;rank=9 scaffold_3 . exon 253578 253609 . + . ID=Phyra93592.9;Parent=Phyra93592;constitutive=1;ensembl_phase=1;rank=9 scaffold_3 . CDS 253658 254012 . + 0 ID=Phyra93592;Parent=Phyra93592;rank=10 scaffold_3 . exon 253658 254012 . + . ID=Phyra93592.10;Parent=Phyra93592;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_3 . CDS 254154 254287 . + 0 ID=Phyra93592;Parent=Phyra93592;rank=11 scaffold_3 . exon 254154 254287 . + . ID=Phyra93592.11;Parent=Phyra93592;constitutive=1;ensembl_phase=1;rank=11 scaffold_3 . CDS 254359 255152 . + 0 ID=Phyra93592;Parent=Phyra93592;rank=12 scaffold_3 . exon 254359 255152 . + . ID=Phyra93592.12;Parent=Phyra93592;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_3 . CDS 255226 255312 . + 0 ID=Phyra93592;Parent=Phyra93592;rank=13 scaffold_3 . exon 255226 255312 . + . ID=Phyra93592.13;Parent=Phyra93592;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=13 scaffold_3 . CDS 255388 256297 . + 0 ID=Phyra93592;Parent=Phyra93592;rank=14 scaffold_3 . exon 255388 256297 . + . ID=Phyra93592.14;Parent=Phyra93592;constitutive=1;ensembl_phase=2;rank=14 scaffold_3 . biological_region 259451 259454 0.999 - . logic_name=eponine scaffold_3 . biological_region 259552 259555 0.999 - . logic_name=eponine scaffold_3 . repeat_region 259732 259785 . ? . description=dust scaffold_3 . repeat_region 261624 261771 . ? . description=trf scaffold_3 . biological_region 266480 266484 0.999 + . logic_name=eponine scaffold_3 . biological_region 268098 268099 0.999 + . logic_name=eponine scaffold_3 . biological_region 268437 268446 0.999 - . logic_name=eponine scaffold_3 . biological_region 268441 268442 0.999 + . logic_name=eponine scaffold_3 . biological_region 268540 268542 0.999 + . logic_name=eponine scaffold_3 . biological_region 268758 268761 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 259081 259682 . + . ID=Phyra46676;biotype=protein_coding;external_name=gwEuk.3.14.1;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 259081 259682 . + . ID=Phyra46676;Parent=Phyra46676;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 259081 259126 . + 0 ID=Phyra46676;Parent=Phyra46676;rank=1 scaffold_3 . exon 259081 259126 . + . ID=Phyra46676.1;Parent=Phyra46676;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 259186 259682 . + 0 ID=Phyra46676;Parent=Phyra46676;rank=2 scaffold_3 . exon 259186 259682 . + . ID=Phyra46676.2;Parent=Phyra46676;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 260823 262465 . - . ID=Phyra73315;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000072;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 260823 262465 . - . ID=Phyra73315;Parent=Phyra73315;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 260823 261807 . - 0 ID=Phyra73315;Parent=Phyra73315;rank=2 scaffold_3 . exon 260823 261807 . - . ID=Phyra73315.2;Parent=Phyra73315;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 262401 262465 . - 0 ID=Phyra73315;Parent=Phyra73315;rank=1 scaffold_3 . exon 262401 262465 . - . ID=Phyra73315.1;Parent=Phyra73315;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 263254 264816 . - . ID=Phyra73316;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000073;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 263254 264816 . - . ID=Phyra73316;Parent=Phyra73316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 263254 264816 . - 0 ID=Phyra73316;Parent=Phyra73316;rank=1 scaffold_3 . exon 263254 264816 . - . ID=Phyra73316.1;Parent=Phyra73316;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 265722 268784 . - . ID=Phyra73317;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000074;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 265722 268784 . - . ID=Phyra73317;Parent=Phyra73317;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 265722 268784 . - 0 ID=Phyra73317;Parent=Phyra73317;rank=1 scaffold_3 . exon 265722 268784 . - . ID=Phyra73317.1;Parent=Phyra73317;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 274242 274904 . - . ID=Phyra73320;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000077;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 274242 274904 . - . ID=Phyra73320;Parent=Phyra73320;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 274242 274904 . - 0 ID=Phyra73320;Parent=Phyra73320;rank=1 scaffold_3 . exon 274242 274904 . - . ID=Phyra73320.1;Parent=Phyra73320;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 278390 279190 . + . ID=Phyra73321;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000078;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 278390 279190 . + . ID=Phyra73321;Parent=Phyra73321;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 278390 279190 . + 0 ID=Phyra73321;Parent=Phyra73321;rank=1 scaffold_3 . exon 278390 279190 . + . ID=Phyra73321.1;Parent=Phyra73321;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 269565 272574 . + . ID=Phyra93593;biotype=protein_coding;external_name=C_scaffold_3000032;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 269565 272574 . + . ID=Phyra93593;Parent=Phyra93593;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 269565 269841 . + 0 ID=Phyra93593;Parent=Phyra93593;rank=1 scaffold_3 . exon 269565 269841 . + . ID=Phyra93593.1;Parent=Phyra93593;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 269986 270095 . + 0 ID=Phyra93593;Parent=Phyra93593;rank=2 scaffold_3 . exon 269986 270095 . + . ID=Phyra93593.2;Parent=Phyra93593;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 270519 270612 . + 0 ID=Phyra93593;Parent=Phyra93593;rank=3 scaffold_3 . exon 270519 270612 . + . ID=Phyra93593.3;Parent=Phyra93593;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 270652 270843 . + 0 ID=Phyra93593;Parent=Phyra93593;rank=4 scaffold_3 . exon 270652 270843 . + . ID=Phyra93593.4;Parent=Phyra93593;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 271039 271146 . + 0 ID=Phyra93593;Parent=Phyra93593;rank=5 scaffold_3 . exon 271039 271146 . + . ID=Phyra93593.5;Parent=Phyra93593;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 271584 271944 . + 0 ID=Phyra93593;Parent=Phyra93593;rank=6 scaffold_3 . exon 271584 271944 . + . ID=Phyra93593.6;Parent=Phyra93593;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_3 . CDS 271978 272077 . + 0 ID=Phyra93593;Parent=Phyra93593;rank=7 scaffold_3 . exon 271978 272077 . + . ID=Phyra93593.7;Parent=Phyra93593;constitutive=1;ensembl_phase=2;rank=7 scaffold_3 . CDS 272129 272428 . + 0 ID=Phyra93593;Parent=Phyra93593;rank=8 scaffold_3 . exon 272129 272428 . + . ID=Phyra93593.8;Parent=Phyra93593;constitutive=1;rank=8 scaffold_3 . CDS 272536 272574 . + 0 ID=Phyra93593;Parent=Phyra93593;rank=9 scaffold_3 . exon 272536 272574 . + . ID=Phyra93593.9;Parent=Phyra93593;constitutive=1;rank=9 scaffold_3 ensembl protein_coding_gene 272645 273148 . - . ID=Phyra93594;biotype=protein_coding;external_name=C_scaffold_3000033;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 272645 273148 . - . ID=Phyra93594;Parent=Phyra93594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 272645 273148 . - 0 ID=Phyra93594;Parent=Phyra93594;rank=1 scaffold_3 . exon 272645 273148 . - . ID=Phyra93594.1;Parent=Phyra93594;constitutive=1;rank=1 scaffold_3 . biological_region 278979 278985 0.999 - . logic_name=eponine scaffold_3 . biological_region 278980 278985 0.999 + . logic_name=eponine scaffold_3 . biological_region 279028 279030 0.999 - . logic_name=eponine scaffold_3 . biological_region 279541 279543 0.999 - . logic_name=eponine scaffold_3 . biological_region 281695 281697 0.999 + . logic_name=eponine scaffold_3 . biological_region 282995 282999 0.999 + . logic_name=eponine scaffold_3 . biological_region 284785 284786 0.999 + . logic_name=eponine scaffold_3 . biological_region 286549 286551 0.999 - . logic_name=eponine scaffold_3 . biological_region 286601 286603 0.999 - . logic_name=eponine scaffold_3 . repeat_region 286997 287089 . ? . description=dust scaffold_3 . biological_region 288554 288555 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 280279 281889 . - . ID=Phyra73323;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000080;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 280279 281889 . - . ID=Phyra73323;Parent=Phyra73323;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 280279 281889 . - 0 ID=Phyra73323;Parent=Phyra73323;rank=1 scaffold_3 . exon 280279 281889 . - . ID=Phyra73323.1;Parent=Phyra73323;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 282290 283534 . - . ID=Phyra73324;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000081;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 282290 283534 . - . ID=Phyra73324;Parent=Phyra73324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 282290 283534 . - 0 ID=Phyra73324;Parent=Phyra73324;rank=1 scaffold_3 . exon 282290 283534 . - . ID=Phyra73324.1;Parent=Phyra73324;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 283836 285086 . - . ID=Phyra73325;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000082;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 283836 285086 . - . ID=Phyra73325;Parent=Phyra73325;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 283836 285086 . - 0 ID=Phyra73325;Parent=Phyra73325;rank=1 scaffold_3 . exon 283836 285086 . - . ID=Phyra73325.1;Parent=Phyra73325;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 286842 289386 . + . ID=Phyra73326;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000083;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 286842 289386 . + . ID=Phyra73326;Parent=Phyra73326;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 286842 286988 . + 0 ID=Phyra73326;Parent=Phyra73326;rank=1 scaffold_3 . exon 286842 286988 . + . ID=Phyra73326.1;Parent=Phyra73326;constitutive=1;rank=1 scaffold_3 . CDS 287182 289386 . + 0 ID=Phyra73326;Parent=Phyra73326;rank=2 scaffold_3 . exon 287182 289386 . + . ID=Phyra73326.2;Parent=Phyra73326;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 279451 280188 . + . ID=Phyra93596;biotype=protein_coding;external_name=C_scaffold_3000035;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 279451 280188 . + . ID=Phyra93596;Parent=Phyra93596;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 279451 280188 . + 0 ID=Phyra93596;Parent=Phyra93596;rank=1 scaffold_3 . exon 279451 280188 . + . ID=Phyra93596.1;Parent=Phyra93596;constitutive=1;rank=1 scaffold_3 . repeat_region 289341 289364 . ? . description=trf scaffold_3 . repeat_region 289342 289372 . ? . description=trf scaffold_3 ensembl protein_coding_gene 289825 291774 . + . ID=Phyra73327;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000084;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 289825 291774 . + . ID=Phyra73327;Parent=Phyra73327;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 289825 291774 . + 0 ID=Phyra73327;Parent=Phyra73327;rank=1 scaffold_3 . exon 289825 291774 . + . ID=Phyra73327.1;Parent=Phyra73327;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 291966 293364 . + . ID=Phyra73328;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000085;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 291966 293364 . + . ID=Phyra73328;Parent=Phyra73328;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 291966 292148 . + 0 ID=Phyra73328;Parent=Phyra73328;rank=1 scaffold_3 . exon 291966 292148 . + . ID=Phyra73328.1;Parent=Phyra73328;constitutive=1;rank=1 scaffold_3 . CDS 292207 293085 . + 0 ID=Phyra73328;Parent=Phyra73328;rank=2 scaffold_3 . exon 292207 293085 . + . ID=Phyra73328.2;Parent=Phyra73328;constitutive=1;rank=2 scaffold_3 . CDS 293164 293364 . + 0 ID=Phyra73328;Parent=Phyra73328;rank=3 scaffold_3 . exon 293164 293364 . + . ID=Phyra73328.3;Parent=Phyra73328;constitutive=1;rank=3 scaffold_3 ensembl protein_coding_gene 294909 295991 . - . ID=Phyra73329;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000086;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 294909 295991 . - . ID=Phyra73329;Parent=Phyra73329;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 294909 295991 . - 0 ID=Phyra73329;Parent=Phyra73329;rank=1 scaffold_3 . exon 294909 295991 . - . ID=Phyra73329.1;Parent=Phyra73329;constitutive=1;rank=1 scaffold_3 . biological_region 302105 302107 0.999 + . logic_name=eponine scaffold_3 . biological_region 305029 305029 0.999 - . logic_name=eponine scaffold_3 . biological_region 305146 305148 0.999 - . logic_name=eponine scaffold_3 . biological_region 305160 305161 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 298854 299687 . - . ID=Phyra73330;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000087;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 298854 299687 . - . ID=Phyra73330;Parent=Phyra73330;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 298854 299687 . - 0 ID=Phyra73330;Parent=Phyra73330;rank=1 scaffold_3 . exon 298854 299687 . - . ID=Phyra73330.1;Parent=Phyra73330;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 300541 302367 . + . ID=Phyra73331;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000088;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 300541 302367 . + . ID=Phyra73331;Parent=Phyra73331;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 300541 302367 . + 0 ID=Phyra73331;Parent=Phyra73331;rank=1 scaffold_3 . exon 300541 302367 . + . ID=Phyra73331.1;Parent=Phyra73331;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 307567 308571 . + . ID=Phyra73332;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000089;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 307567 308571 . + . ID=Phyra73332;Parent=Phyra73332;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 307567 308571 . + 0 ID=Phyra73332;Parent=Phyra73332;rank=1 scaffold_3 . exon 307567 308571 . + . ID=Phyra73332.1;Parent=Phyra73332;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 309880 342549 . - . ID=Phyra73333;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000090;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 309880 342549 . - . ID=Phyra73333;Parent=Phyra73333;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 309880 339263 . - 0 ID=Phyra73333;Parent=Phyra73333;rank=5 scaffold_3 . exon 309880 339263 . - . ID=Phyra73333.5;Parent=Phyra73333;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 339332 341899 . - 0 ID=Phyra73333;Parent=Phyra73333;rank=4 scaffold_3 . CDS 341984 342088 . - 0 ID=Phyra73333;Parent=Phyra73333;rank=3 scaffold_3 . CDS 342142 342376 . - 0 ID=Phyra73333;Parent=Phyra73333;rank=2 scaffold_3 . CDS 342409 342549 . - 0 ID=Phyra73333;Parent=Phyra73333;rank=1 scaffold_3 . biological_region 319697 319700 0.999 + . logic_name=eponine scaffold_3 . biological_region 321411 321414 0.999 + . logic_name=eponine scaffold_3 . biological_region 322656 322657 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 309880 342549 . - . ID=Phyra73333;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000090;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 309880 342549 . - . ID=Phyra73333;Parent=Phyra73333;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 309880 339263 . - 0 ID=Phyra73333;Parent=Phyra73333;rank=5 scaffold_3 . exon 309880 339263 . - . ID=Phyra73333.5;Parent=Phyra73333;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 339332 341899 . - 0 ID=Phyra73333;Parent=Phyra73333;rank=4 scaffold_3 . CDS 341984 342088 . - 0 ID=Phyra73333;Parent=Phyra73333;rank=3 scaffold_3 . CDS 342142 342376 . - 0 ID=Phyra73333;Parent=Phyra73333;rank=2 scaffold_3 . CDS 342409 342549 . - 0 ID=Phyra73333;Parent=Phyra73333;rank=1 scaffold_3 . repeat_region 342614 342621 . ? . description=dust scaffold_3 . repeat_region 344264 344344 . ? . description=trf scaffold_3 . biological_region 345177 345179 0.999 + . logic_name=eponine scaffold_3 . biological_region 347780 347781 0.999 - . logic_name=eponine scaffold_3 . exon 339332 341899 . - . ID=Phyra73333.4;Parent=Phyra73333;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_3 . exon 341984 342088 . - . ID=Phyra73333.3;Parent=Phyra73333;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_3 . exon 342142 342376 . - . ID=Phyra73333.2;Parent=Phyra73333;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . exon 342409 342549 . - . ID=Phyra73333.1;Parent=Phyra73333;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 343503 344363 . - . ID=Phyra73334;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000091;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 343503 344363 . - . ID=Phyra73334;Parent=Phyra73334;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 343503 344363 . - 0 ID=Phyra73334;Parent=Phyra73334;rank=1 scaffold_3 . exon 343503 344363 . - . ID=Phyra73334.1;Parent=Phyra73334;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 345034 345630 . - . ID=Phyra73335;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000092;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 345034 345630 . - . ID=Phyra73335;Parent=Phyra73335;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 345034 345630 . - 0 ID=Phyra73335;Parent=Phyra73335;rank=1 scaffold_3 . exon 345034 345630 . - . ID=Phyra73335.1;Parent=Phyra73335;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 346160 346579 . - . ID=Phyra73336;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000093;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 346160 346579 . - . ID=Phyra73336;Parent=Phyra73336;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 346160 346579 . - 0 ID=Phyra73336;Parent=Phyra73336;rank=1 scaffold_3 . exon 346160 346579 . - . ID=Phyra73336.1;Parent=Phyra73336;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 347463 349398 . + . ID=Phyra93598;biotype=protein_coding;external_name=C_scaffold_3000037;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 347463 349398 . + . ID=Phyra93598;Parent=Phyra93598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 347463 347852 . + 0 ID=Phyra93598;Parent=Phyra93598;rank=1 scaffold_3 . exon 347463 347852 . + . ID=Phyra93598.1;Parent=Phyra93598;constitutive=1;rank=1 scaffold_3 . CDS 347877 348100 . + 0 ID=Phyra93598;Parent=Phyra93598;rank=2 scaffold_3 . exon 347877 348100 . + . ID=Phyra93598.2;Parent=Phyra93598;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 348556 348758 . + 0 ID=Phyra93598;Parent=Phyra93598;rank=3 scaffold_3 . exon 348556 348758 . + . ID=Phyra93598.3;Parent=Phyra93598;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 348789 349202 . + 0 ID=Phyra93598;Parent=Phyra93598;rank=4 scaffold_3 . CDS 349388 349398 . + 0 ID=Phyra93598;Parent=Phyra93598;rank=5 scaffold_3 ensembl protein_coding_gene 350913 352403 . - . ID=Phyra73338;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000095;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 350913 352403 . - . ID=Phyra73338;Parent=Phyra73338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 350913 352403 . - 0 ID=Phyra73338;Parent=Phyra73338;rank=1 scaffold_3 . exon 350913 352403 . - . ID=Phyra73338.1;Parent=Phyra73338;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 353650 354792 . - . ID=Phyra73339;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000096;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 353650 354792 . - . ID=Phyra73339;Parent=Phyra73339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 353650 354792 . - 0 ID=Phyra73339;Parent=Phyra73339;rank=1 scaffold_3 . exon 353650 354792 . - . ID=Phyra73339.1;Parent=Phyra73339;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 355923 357335 . + . ID=Phyra73340;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000097;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 355923 357335 . + . ID=Phyra73340;Parent=Phyra73340;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 355923 356126 . + 0 ID=Phyra73340;Parent=Phyra73340;rank=1 scaffold_3 . exon 355923 356126 . + . ID=Phyra73340.1;Parent=Phyra73340;constitutive=1;rank=1 scaffold_3 . CDS 356198 356340 . + 0 ID=Phyra73340;Parent=Phyra73340;rank=2 scaffold_3 . exon 356198 356340 . + . ID=Phyra73340.2;Parent=Phyra73340;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 356411 356553 . + 0 ID=Phyra73340;Parent=Phyra73340;rank=3 scaffold_3 . exon 356411 356553 . + . ID=Phyra73340.3;Parent=Phyra73340;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 356668 356807 . + 0 ID=Phyra73340;Parent=Phyra73340;rank=4 scaffold_3 . exon 356668 356807 . + . ID=Phyra73340.4;Parent=Phyra73340;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 356875 356978 . + 0 ID=Phyra73340;Parent=Phyra73340;rank=5 scaffold_3 . exon 356875 356978 . + . ID=Phyra73340.5;Parent=Phyra73340;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_3 . CDS 357050 357335 . + 0 ID=Phyra73340;Parent=Phyra73340;rank=6 scaffold_3 . exon 357050 357335 . + . ID=Phyra73340.6;Parent=Phyra73340;constitutive=1;ensembl_phase=2;rank=6 scaffold_3 ensembl protein_coding_gene 357394 358455 . - . ID=Phyra73341;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000098;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 357394 358455 . - . ID=Phyra73341;Parent=Phyra73341;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 357394 358455 . - 0 ID=Phyra73341;Parent=Phyra73341;rank=1 scaffold_3 . exon 357394 358455 . - . ID=Phyra73341.1;Parent=Phyra73341;constitutive=1;rank=1 scaffold_3 . exon 348789 349202 . + . ID=Phyra93598.4;Parent=Phyra93598;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_3 . exon 349388 349398 . + . ID=Phyra93598.5;Parent=Phyra93598;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . biological_region 361620 361624 0.999 - . logic_name=eponine scaffold_3 . biological_region 364716 364718 0.999 - . logic_name=eponine scaffold_3 . biological_region 365970 365972 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 359038 367022 . - . ID=Phyra73342;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000099;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 359038 367022 . - . ID=Phyra73342;Parent=Phyra73342;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 359038 366234 . - 0 ID=Phyra73342;Parent=Phyra73342;rank=5 scaffold_3 . exon 359038 366234 . - . ID=Phyra73342.5;Parent=Phyra73342;constitutive=1;rank=5 scaffold_3 . CDS 366439 366569 . - 0 ID=Phyra73342;Parent=Phyra73342;rank=4 scaffold_3 . exon 366439 366569 . - . ID=Phyra73342.4;Parent=Phyra73342;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 366640 366772 . - 0 ID=Phyra73342;Parent=Phyra73342;rank=3 scaffold_3 . exon 366640 366772 . - . ID=Phyra73342.3;Parent=Phyra73342;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 366856 366885 . - 0 ID=Phyra73342;Parent=Phyra73342;rank=2 scaffold_3 . exon 366856 366885 . - . ID=Phyra73342.2;Parent=Phyra73342;constitutive=1;rank=2 scaffold_3 . CDS 367008 367022 . - 0 ID=Phyra73342;Parent=Phyra73342;rank=1 scaffold_3 . exon 367008 367022 . - . ID=Phyra73342.1;Parent=Phyra73342;constitutive=1;rank=1 scaffold_3 . repeat_region 368878 368890 . ? . description=dust scaffold_3 . repeat_region 372530 372537 . ? . description=dust scaffold_3 . repeat_region 372704 372753 . ? . description=dust scaffold_3 . repeat_region 374314 376742 . ? . description=dust scaffold_3 . repeat_region 377376 377395 . ? . description=trf scaffold_3 . repeat_region 378182 378991 . ? . description=dust scaffold_3 ensembl protein_coding_gene 373273 373749 . - . ID=Phyra73343;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000100;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 373273 373749 . - . ID=Phyra73343;Parent=Phyra73343;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 373273 373749 . - 0 ID=Phyra73343;Parent=Phyra73343;rank=1 scaffold_3 . exon 373273 373749 . - . ID=Phyra73343.1;Parent=Phyra73343;constitutive=1;rank=1 scaffold_3 . biological_region 386656 386663 0.999 + . logic_name=eponine scaffold_3 . biological_region 386673 386677 0.999 - . logic_name=eponine scaffold_3 . biological_region 386731 386731 0.999 + . logic_name=eponine scaffold_3 . biological_region 386775 386779 0.999 - . logic_name=eponine scaffold_3 . biological_region 387042 387045 0.999 + . logic_name=eponine scaffold_3 . biological_region 387898 387899 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 386566 388540 . + . ID=Phyra73344;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000101;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 386566 388540 . + . ID=Phyra73344;Parent=Phyra73344;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 386566 387804 . + 0 ID=Phyra73344;Parent=Phyra73344;rank=1 scaffold_3 . exon 386566 387804 . + . ID=Phyra73344.1;Parent=Phyra73344;constitutive=1;rank=1 scaffold_3 . CDS 388142 388540 . + 0 ID=Phyra73344;Parent=Phyra73344;rank=2 scaffold_3 . exon 388142 388540 . + . ID=Phyra73344.2;Parent=Phyra73344;constitutive=1;rank=2 scaffold_3 . repeat_region 391446 391495 . ? . description=dust scaffold_3 . repeat_region 393129 393155 . ? . description=trf scaffold_3 . repeat_region 394079 394095 . ? . description=dust scaffold_3 . repeat_region 398026 398045 . ? . description=dust scaffold_3 ensembl protein_coding_gene 388780 391436 . - . ID=Phyra73345;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000102;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 388780 391436 . - . ID=Phyra73345;Parent=Phyra73345;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 388780 388785 . - 0 ID=Phyra73345;Parent=Phyra73345;rank=2 scaffold_3 . exon 388780 388785 . - . ID=Phyra73345.2;Parent=Phyra73345;constitutive=1;rank=2 scaffold_3 . CDS 388884 391436 . - 0 ID=Phyra73345;Parent=Phyra73345;rank=1 scaffold_3 . exon 388884 391436 . - . ID=Phyra73345.1;Parent=Phyra73345;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 392160 392966 . + . ID=Phyra73346;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000103;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 392160 392966 . + . ID=Phyra73346;Parent=Phyra73346;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 392160 392966 . + 0 ID=Phyra73346;Parent=Phyra73346;rank=1 scaffold_3 . exon 392160 392966 . + . ID=Phyra73346.1;Parent=Phyra73346;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 394115 394945 . - . ID=Phyra73347;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000104;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 394115 394945 . - . ID=Phyra73347;Parent=Phyra73347;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 394115 394945 . - 0 ID=Phyra73347;Parent=Phyra73347;rank=1 scaffold_3 . exon 394115 394945 . - . ID=Phyra73347.1;Parent=Phyra73347;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 398129 399262 . + . ID=Phyra73348;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000105;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 398129 399262 . + . ID=Phyra73348;Parent=Phyra73348;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 398129 398653 . + 0 ID=Phyra73348;Parent=Phyra73348;rank=1 scaffold_3 . exon 398129 398653 . + . ID=Phyra73348.1;Parent=Phyra73348;constitutive=1;rank=1 scaffold_3 . CDS 398840 399262 . + 0 ID=Phyra73348;Parent=Phyra73348;rank=2 scaffold_3 . biological_region 406042 406045 0.999 - . logic_name=eponine scaffold_3 . biological_region 406847 406848 0.999 - . logic_name=eponine scaffold_3 . biological_region 407972 407974 0.999 - . logic_name=eponine scaffold_3 . exon 398840 399262 . + . ID=Phyra73348.2;Parent=Phyra73348;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 400423 400899 . + . ID=Phyra73349;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000106;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 400423 400899 . + . ID=Phyra73349;Parent=Phyra73349;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 400423 400899 . + 0 ID=Phyra73349;Parent=Phyra73349;rank=1 scaffold_3 . exon 400423 400899 . + . ID=Phyra73349.1;Parent=Phyra73349;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 403617 407054 . - . ID=Phyra73350;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000107;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 403617 407054 . - . ID=Phyra73350;Parent=Phyra73350;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 403617 407054 . - 0 ID=Phyra73350;Parent=Phyra73350;rank=1 scaffold_3 . exon 403617 407054 . - . ID=Phyra73350.1;Parent=Phyra73350;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 407846 409096 . + . ID=Phyra73351;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000108;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 407846 409096 . + . ID=Phyra73351;Parent=Phyra73351;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 407846 409096 . + 0 ID=Phyra73351;Parent=Phyra73351;rank=1 scaffold_3 . exon 407846 409096 . + . ID=Phyra73351.1;Parent=Phyra73351;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 409531 416753 . + . ID=Phyra73352;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000109;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 409531 416753 . + . ID=Phyra73352;Parent=Phyra73352;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 409531 412898 . + 0 ID=Phyra73352;Parent=Phyra73352;rank=1 scaffold_3 . exon 409531 412898 . + . ID=Phyra73352.1;Parent=Phyra73352;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 413033 416753 . + 0 ID=Phyra73352;Parent=Phyra73352;rank=2 scaffold_3 . exon 413033 416753 . + . ID=Phyra73352.2;Parent=Phyra73352;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 ensembl protein_coding_gene 416790 419010 . - . ID=Phyra73353;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000110;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 416790 419010 . - . ID=Phyra73353;Parent=Phyra73353;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 416790 418607 . - 0 ID=Phyra73353;Parent=Phyra73353;rank=2 scaffold_3 . exon 416790 418607 . - . ID=Phyra73353.2;Parent=Phyra73353;constitutive=1;rank=2 scaffold_3 . CDS 418660 419010 . - 0 ID=Phyra73353;Parent=Phyra73353;rank=1 scaffold_3 . biological_region 421617 421618 0.999 + . logic_name=eponine scaffold_3 . biological_region 424131 424134 0.999 - . logic_name=eponine scaffold_3 . biological_region 425074 425076 0.999 + . logic_name=eponine scaffold_3 . biological_region 425074 425076 0.999 - . logic_name=eponine scaffold_3 . biological_region 425091 425095 0.999 + . logic_name=eponine scaffold_3 . biological_region 425116 425116 0.999 - . logic_name=eponine scaffold_3 . biological_region 425147 425148 0.999 - . logic_name=eponine scaffold_3 . biological_region 425517 425522 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 419194 420939 . - . ID=Phyra46689;biotype=protein_coding;external_name=gwEuk.3.27.1;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 419194 420939 . - . ID=Phyra46689;Parent=Phyra46689;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 419194 420939 . - 0 ID=Phyra46689;Parent=Phyra46689;rank=1 scaffold_3 . exon 419194 420939 . - . ID=Phyra46689.1;Parent=Phyra46689;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 427231 428229 . + . ID=Phyra46702;biotype=protein_coding;external_name=gwEuk.3.40.1;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 427231 428229 . + . ID=Phyra46702;Parent=Phyra46702;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 427231 428229 . + 0 ID=Phyra46702;Parent=Phyra46702;rank=1 scaffold_3 . exon 427231 428229 . + . ID=Phyra46702.1;Parent=Phyra46702;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 423564 425243 . + . ID=Phyra71100;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000009;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 423564 425243 . + . ID=Phyra71100;Parent=Phyra71100;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 423564 425243 . + 0 ID=Phyra71100;Parent=Phyra71100;rank=1 scaffold_3 . exon 423564 425243 . + . ID=Phyra71100.1;Parent=Phyra71100;constitutive=1;rank=1 scaffold_3 . exon 418660 419010 . - . ID=Phyra73353.1;Parent=Phyra73353;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 421435 422283 . + . ID=Phyra73355;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000112;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 421435 422283 . + . ID=Phyra73355;Parent=Phyra73355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 421435 422283 . + 0 ID=Phyra73355;Parent=Phyra73355;rank=1 scaffold_3 . exon 421435 422283 . + . ID=Phyra73355.1;Parent=Phyra73355;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 425503 426561 . - . ID=Phyra73357;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000114;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 425503 426561 . - . ID=Phyra73357;Parent=Phyra73357;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 425503 426561 . - 0 ID=Phyra73357;Parent=Phyra73357;rank=1 scaffold_3 . exon 425503 426561 . - . ID=Phyra73357.1;Parent=Phyra73357;constitutive=1;rank=1 scaffold_3 . repeat_region 430875 430923 . ? . description=trf scaffold_3 . repeat_region 436476 436531 . ? . description=dust scaffold_3 . repeat_region 436477 436512 . ? . description=trf scaffold_3 ensembl protein_coding_gene 428772 429525 . + . ID=Phyra46705;biotype=protein_coding;external_name=gwEuk.3.43.1;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 428772 429525 . + . ID=Phyra46705;Parent=Phyra46705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 428772 428933 . + 0 ID=Phyra46705;Parent=Phyra46705;rank=1 scaffold_3 . exon 428772 428933 . + . ID=Phyra46705.1;Parent=Phyra46705;constitutive=1;rank=1 scaffold_3 . CDS 429008 429241 . + 0 ID=Phyra46705;Parent=Phyra46705;rank=2 scaffold_3 . exon 429008 429241 . + . ID=Phyra46705.2;Parent=Phyra46705;constitutive=1;rank=2 scaffold_3 . CDS 429307 429525 . + 0 ID=Phyra46705;Parent=Phyra46705;rank=3 scaffold_3 . exon 429307 429525 . + . ID=Phyra46705.3;Parent=Phyra46705;constitutive=1;rank=3 scaffold_3 ensembl protein_coding_gene 431048 432046 . + . ID=Phyra46722;biotype=protein_coding;external_name=gwEuk.3.60.1;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 431048 432046 . + . ID=Phyra46722;Parent=Phyra46722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 431048 432046 . + 0 ID=Phyra46722;Parent=Phyra46722;rank=1 scaffold_3 . exon 431048 432046 . + . ID=Phyra46722.1;Parent=Phyra46722;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 433598 434593 . + . ID=Phyra46723;biotype=protein_coding;external_name=gwEuk.3.61.1;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 433598 434593 . + . ID=Phyra46723;Parent=Phyra46723;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 433598 434593 . + 0 ID=Phyra46723;Parent=Phyra46723;rank=1 scaffold_3 . exon 433598 434593 . + . ID=Phyra46723.1;Parent=Phyra46723;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 436985 438612 . - . ID=Phyra46727;biotype=protein_coding;external_name=gwEuk.3.65.1;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 436985 438612 . - . ID=Phyra46727;Parent=Phyra46727;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 436985 437096 . - 0 ID=Phyra46727;Parent=Phyra46727;rank=6 scaffold_3 . exon 436985 437096 . - . ID=Phyra46727.6;Parent=Phyra46727;constitutive=1;ensembl_phase=2;rank=6 scaffold_3 . CDS 437167 437343 . - 0 ID=Phyra46727;Parent=Phyra46727;rank=5 scaffold_3 . exon 437167 437343 . - . ID=Phyra46727.5;Parent=Phyra46727;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_3 . CDS 437409 437719 . - 0 ID=Phyra46727;Parent=Phyra46727;rank=4 scaffold_3 . exon 437409 437719 . - . ID=Phyra46727.4;Parent=Phyra46727;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_3 . CDS 437800 438009 . - 0 ID=Phyra46727;Parent=Phyra46727;rank=3 scaffold_3 . exon 437800 438009 . - . ID=Phyra46727.3;Parent=Phyra46727;constitutive=1;rank=3 scaffold_3 . CDS 438076 438202 . - 0 ID=Phyra46727;Parent=Phyra46727;rank=2 scaffold_3 . exon 438076 438202 . - . ID=Phyra46727.2;Parent=Phyra46727;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 438296 438612 . - 0 ID=Phyra46727;Parent=Phyra46727;rank=1 scaffold_3 ensembl protein_coding_gene 432222 433268 . - . ID=Phyra73360;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000117;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 432222 433268 . - . ID=Phyra73360;Parent=Phyra73360;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 432222 433268 . - 0 ID=Phyra73360;Parent=Phyra73360;rank=1 scaffold_3 . exon 432222 433268 . - . ID=Phyra73360.1;Parent=Phyra73360;constitutive=1;rank=1 scaffold_3 . biological_region 438453 438456 0.999 + . logic_name=eponine scaffold_3 . biological_region 438614 438618 0.999 - . logic_name=eponine scaffold_3 . biological_region 438680 438685 0.999 - . logic_name=eponine scaffold_3 . biological_region 439419 439421 0.999 + . logic_name=eponine scaffold_3 . biological_region 439609 439615 0.999 + . logic_name=eponine scaffold_3 . biological_region 439638 439645 0.999 - . logic_name=eponine scaffold_3 . biological_region 446083 446085 0.999 + . logic_name=eponine scaffold_3 . exon 438296 438612 . - . ID=Phyra46727.1;Parent=Phyra46727;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 438844 439863 . - . ID=Phyra73363;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000120;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 438844 439863 . - . ID=Phyra73363;Parent=Phyra73363;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 438844 439863 . - 0 ID=Phyra73363;Parent=Phyra73363;rank=1 scaffold_3 . exon 438844 439863 . - . ID=Phyra73363.1;Parent=Phyra73363;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 440904 441809 . + . ID=Phyra73364;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000121;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 440904 441809 . + . ID=Phyra73364;Parent=Phyra73364;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 440904 441809 . + 0 ID=Phyra73364;Parent=Phyra73364;rank=1 scaffold_3 . exon 440904 441809 . + . ID=Phyra73364.1;Parent=Phyra73364;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 442726 445716 . + . ID=Phyra73365;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000122;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 442726 445716 . + . ID=Phyra73365;Parent=Phyra73365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 442726 445716 . + 0 ID=Phyra73365;Parent=Phyra73365;rank=1 scaffold_3 . exon 442726 445716 . + . ID=Phyra73365.1;Parent=Phyra73365;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 445929 449894 . + . ID=Phyra73366;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000123;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 445929 449894 . + . ID=Phyra73366;Parent=Phyra73366;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 445929 449894 . + 0 ID=Phyra73366;Parent=Phyra73366;rank=1 scaffold_3 . exon 445929 449894 . + . ID=Phyra73366.1;Parent=Phyra73366;constitutive=1;rank=1 scaffold_3 . repeat_region 450081 450117 . ? . description=trf scaffold_3 . repeat_region 452392 452427 . ? . description=trf scaffold_3 . repeat_region 452600 452649 . ? . description=dust scaffold_3 . repeat_region 458131 458185 . ? . description=trf scaffold_3 ensembl protein_coding_gene 454005 455045 . - . ID=Phyra71101;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000010;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 454005 455045 . - . ID=Phyra71101;Parent=Phyra71101;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 454005 455045 . - 0 ID=Phyra71101;Parent=Phyra71101;rank=1 scaffold_3 . exon 454005 455045 . - . ID=Phyra71101.1;Parent=Phyra71101;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 450130 451197 . - . ID=Phyra73367;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000124;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 450130 451197 . - . ID=Phyra73367;Parent=Phyra73367;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 450130 451197 . - 0 ID=Phyra73367;Parent=Phyra73367;rank=1 scaffold_3 . exon 450130 451197 . - . ID=Phyra73367.1;Parent=Phyra73367;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 451755 452174 . + . ID=Phyra73368;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000125;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 451755 452174 . + . ID=Phyra73368;Parent=Phyra73368;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 451755 452174 . + 0 ID=Phyra73368;Parent=Phyra73368;rank=1 scaffold_3 . exon 451755 452174 . + . ID=Phyra73368.1;Parent=Phyra73368;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 452746 453810 . + . ID=Phyra73369;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000126;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 452746 453810 . + . ID=Phyra73369;Parent=Phyra73369;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 452746 453810 . + 0 ID=Phyra73369;Parent=Phyra73369;rank=1 scaffold_3 . exon 452746 453810 . + . ID=Phyra73369.1;Parent=Phyra73369;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 455757 456696 . + . ID=Phyra73371;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000128;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 455757 456696 . + . ID=Phyra73371;Parent=Phyra73371;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 455757 456394 . + 0 ID=Phyra73371;Parent=Phyra73371;rank=1 scaffold_3 . exon 455757 456394 . + . ID=Phyra73371.1;Parent=Phyra73371;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 456447 456696 . + 0 ID=Phyra73371;Parent=Phyra73371;rank=2 scaffold_3 . exon 456447 456696 . + . ID=Phyra73371.2;Parent=Phyra73371;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 ensembl protein_coding_gene 457461 458825 . + . ID=Phyra73372;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000129;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 457461 458825 . + . ID=Phyra73372;Parent=Phyra73372;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 457461 457522 . + 0 ID=Phyra73372;Parent=Phyra73372;rank=1 scaffold_3 . exon 457461 457522 . + . ID=Phyra73372.1;Parent=Phyra73372;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 457859 458620 . + 0 ID=Phyra73372;Parent=Phyra73372;rank=2 scaffold_3 . exon 457859 458620 . + . ID=Phyra73372.2;Parent=Phyra73372;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_3 . CDS 458783 458825 . + 0 ID=Phyra73372;Parent=Phyra73372;rank=3 scaffold_3 . exon 458783 458825 . + . ID=Phyra73372.3;Parent=Phyra73372;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 ensembl protein_coding_gene 459677 462088 . - . ID=Phyra73373;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000130;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 459677 462088 . - . ID=Phyra73373;Parent=Phyra73373;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 459677 462088 . - 0 ID=Phyra73373;Parent=Phyra73373;rank=1 scaffold_3 . exon 459677 462088 . - . ID=Phyra73373.1;Parent=Phyra73373;constitutive=1;rank=1 scaffold_3 . biological_region 473933 473935 0.999 - . logic_name=eponine scaffold_3 . biological_region 474272 474274 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 473849 474385 . + . ID=Phyra71102;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000011;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 473849 474385 . + . ID=Phyra71102;Parent=Phyra71102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 473849 473948 . + 0 ID=Phyra71102;Parent=Phyra71102;rank=1 scaffold_3 . exon 473849 473948 . + . ID=Phyra71102.1;Parent=Phyra71102;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 474066 474385 . + 0 ID=Phyra71102;Parent=Phyra71102;rank=2 scaffold_3 . exon 474066 474385 . + . ID=Phyra71102.2;Parent=Phyra71102;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 472404 473418 . - . ID=Phyra73374;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000131;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 472404 473418 . - . ID=Phyra73374;Parent=Phyra73374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 472404 472433 . - 0 ID=Phyra73374;Parent=Phyra73374;rank=2 scaffold_3 . exon 472404 472433 . - . ID=Phyra73374.2;Parent=Phyra73374;constitutive=1;rank=2 scaffold_3 . CDS 472552 473418 . - 0 ID=Phyra73374;Parent=Phyra73374;rank=1 scaffold_3 . exon 472552 473418 . - . ID=Phyra73374.1;Parent=Phyra73374;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 474790 475296 . + . ID=Phyra73376;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000133;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 474790 475296 . + . ID=Phyra73376;Parent=Phyra73376;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 474790 475015 . + 0 ID=Phyra73376;Parent=Phyra73376;rank=1 scaffold_3 . exon 474790 475015 . + . ID=Phyra73376.1;Parent=Phyra73376;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 475085 475296 . + 0 ID=Phyra73376;Parent=Phyra73376;rank=2 scaffold_3 . exon 475085 475296 . + . ID=Phyra73376.2;Parent=Phyra73376;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 470088 470421 . - . ID=Phyra93604;biotype=protein_coding;external_name=C_scaffold_3000043;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 470088 470421 . - . ID=Phyra93604;Parent=Phyra93604;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 470088 470421 . - 0 ID=Phyra93604;Parent=Phyra93604;rank=1 scaffold_3 . exon 470088 470421 . - . ID=Phyra93604.1;Parent=Phyra93604;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . repeat_region 485747 485774 . ? . description=trf scaffold_3 ensembl protein_coding_gene 480972 481628 . + . ID=Phyra71103;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000012;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 480972 481628 . + . ID=Phyra71103;Parent=Phyra71103;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 480972 481628 . + 0 ID=Phyra71103;Parent=Phyra71103;rank=1 scaffold_3 . exon 480972 481628 . + . ID=Phyra71103.1;Parent=Phyra71103;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 479385 480650 . + . ID=Phyra73377;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000134;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 479385 480650 . + . ID=Phyra73377;Parent=Phyra73377;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 479385 480650 . + 0 ID=Phyra73377;Parent=Phyra73377;rank=1 scaffold_3 . exon 479385 480650 . + . ID=Phyra73377.1;Parent=Phyra73377;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 481832 485326 . - . ID=Phyra73379;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000136;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 481832 485326 . - . ID=Phyra73379;Parent=Phyra73379;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 481832 485326 . - 0 ID=Phyra73379;Parent=Phyra73379;rank=1 scaffold_3 . exon 481832 485326 . - . ID=Phyra73379.1;Parent=Phyra73379;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 485899 486960 . - . ID=Phyra73380;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000137;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 485899 486960 . - . ID=Phyra73380;Parent=Phyra73380;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 485899 486960 . - 0 ID=Phyra73380;Parent=Phyra73380;rank=1 scaffold_3 . exon 485899 486960 . - . ID=Phyra73380.1;Parent=Phyra73380;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 487667 488143 . + . ID=Phyra73381;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000138;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 487667 488143 . + . ID=Phyra73381;Parent=Phyra73381;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 487667 488143 . + 0 ID=Phyra73381;Parent=Phyra73381;rank=1 scaffold_3 . exon 487667 488143 . + . ID=Phyra73381.1;Parent=Phyra73381;constitutive=1;rank=1 scaffold_3 . repeat_region 489769 489783 . ? . description=dust scaffold_3 . biological_region 490898 490902 0.999 - . logic_name=eponine scaffold_3 . biological_region 491813 491819 0.999 - . logic_name=eponine scaffold_3 . biological_region 492620 492623 0.999 + . logic_name=eponine scaffold_3 . repeat_region 495397 495409 . ? . description=dust scaffold_3 . biological_region 496829 496830 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 491600 493018 . + . ID=Phyra46768;biotype=protein_coding;external_name=gwEuk.3.106.1;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 491600 493018 . + . ID=Phyra46768;Parent=Phyra46768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 491600 493018 . + 0 ID=Phyra46768;Parent=Phyra46768;rank=1 scaffold_3 . exon 491600 493018 . + . ID=Phyra46768.1;Parent=Phyra46768;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 489481 490666 . - . ID=Phyra73382;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000139;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 489481 490666 . - . ID=Phyra73382;Parent=Phyra73382;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 489481 489762 . - 0 ID=Phyra73382;Parent=Phyra73382;rank=2 scaffold_3 . exon 489481 489762 . - . ID=Phyra73382.2;Parent=Phyra73382;constitutive=1;rank=2 scaffold_3 . CDS 489845 490666 . - 0 ID=Phyra73382;Parent=Phyra73382;rank=1 scaffold_3 . exon 489845 490666 . - . ID=Phyra73382.1;Parent=Phyra73382;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 493848 495395 . + . ID=Phyra73384;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000141;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 493848 495395 . + . ID=Phyra73384;Parent=Phyra73384;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 493848 495395 . + 0 ID=Phyra73384;Parent=Phyra73384;rank=1 scaffold_3 . exon 493848 495395 . + . ID=Phyra73384.1;Parent=Phyra73384;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 495657 496586 . - . ID=Phyra73385;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000142;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 495657 496586 . - . ID=Phyra73385;Parent=Phyra73385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 495657 496586 . - 0 ID=Phyra73385;Parent=Phyra73385;rank=1 scaffold_3 . exon 495657 496586 . - . ID=Phyra73385.1;Parent=Phyra73385;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 497601 498343 . + . ID=Phyra73386;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000143;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 497601 498343 . + . ID=Phyra73386;Parent=Phyra73386;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 497601 498044 . + 0 ID=Phyra73386;Parent=Phyra73386;rank=1 scaffold_3 . exon 497601 498044 . + . ID=Phyra73386.1;Parent=Phyra73386;constitutive=1;rank=1 scaffold_3 . CDS 498134 498343 . + 0 ID=Phyra73386;Parent=Phyra73386;rank=2 scaffold_3 ensembl protein_coding_gene 498612 498938 . + . ID=Phyra71104;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000013;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 498612 498938 . + . ID=Phyra71104;Parent=Phyra71104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 498612 498938 . + 0 ID=Phyra71104;Parent=Phyra71104;rank=1 scaffold_3 . exon 498612 498938 . + . ID=Phyra71104.1;Parent=Phyra71104;constitutive=1;rank=1 scaffold_3 . exon 498134 498343 . + . ID=Phyra73386.2;Parent=Phyra73386;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 499417 500657 . - . ID=Phyra73388;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000145;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 499417 500657 . - . ID=Phyra73388;Parent=Phyra73388;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 499417 500098 . - 0 ID=Phyra73388;Parent=Phyra73388;rank=4 scaffold_3 . exon 499417 500098 . - . ID=Phyra73388.4;Parent=Phyra73388;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 500189 500239 . - 0 ID=Phyra73388;Parent=Phyra73388;rank=3 scaffold_3 . exon 500189 500239 . - . ID=Phyra73388.3;Parent=Phyra73388;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_3 . CDS 500325 500435 . - 0 ID=Phyra73388;Parent=Phyra73388;rank=2 scaffold_3 . exon 500325 500435 . - . ID=Phyra73388.2;Parent=Phyra73388;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_3 . CDS 500515 500657 . - 0 ID=Phyra73388;Parent=Phyra73388;rank=1 scaffold_3 . exon 500515 500657 . - . ID=Phyra73388.1;Parent=Phyra73388;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 500988 501657 . + . ID=Phyra73389;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000146;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 500988 501657 . + . ID=Phyra73389;Parent=Phyra73389;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 500988 501276 . + 0 ID=Phyra73389;Parent=Phyra73389;rank=1 scaffold_3 . exon 500988 501276 . + . ID=Phyra73389.1;Parent=Phyra73389;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 501353 501657 . + 0 ID=Phyra73389;Parent=Phyra73389;rank=2 scaffold_3 . exon 501353 501657 . + . ID=Phyra73389.2;Parent=Phyra73389;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 503108 504421 . - . ID=Phyra73390;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000147;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 503108 504421 . - . ID=Phyra73390;Parent=Phyra73390;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 503108 504421 . - 0 ID=Phyra73390;Parent=Phyra73390;rank=1 scaffold_3 . exon 503108 504421 . - . ID=Phyra73390.1;Parent=Phyra73390;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 504755 507095 . - . ID=Phyra93611;biotype=protein_coding;external_name=C_scaffold_3000050;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 504755 507095 . - . ID=Phyra93611;Parent=Phyra93611;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 504755 505505 . - 0 ID=Phyra93611;Parent=Phyra93611;rank=7 scaffold_3 . exon 504755 505505 . - . ID=Phyra93611.7;Parent=Phyra93611;constitutive=1;ensembl_phase=2;rank=7 scaffold_3 . CDS 505568 505636 . - 0 ID=Phyra93611;Parent=Phyra93611;rank=6 scaffold_3 . exon 505568 505636 . - . ID=Phyra93611.6;Parent=Phyra93611;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_3 . CDS 505706 505946 . - 0 ID=Phyra93611;Parent=Phyra93611;rank=5 scaffold_3 . exon 505706 505946 . - . ID=Phyra93611.5;Parent=Phyra93611;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_3 . CDS 506124 506350 . - 0 ID=Phyra93611;Parent=Phyra93611;rank=4 scaffold_3 . exon 506124 506350 . - . ID=Phyra93611.4;Parent=Phyra93611;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 506488 506675 . - 0 ID=Phyra93611;Parent=Phyra93611;rank=3 scaffold_3 . exon 506488 506675 . - . ID=Phyra93611.3;Parent=Phyra93611;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_3 . CDS 506747 506813 . - 0 ID=Phyra93611;Parent=Phyra93611;rank=2 scaffold_3 . exon 506747 506813 . - . ID=Phyra93611.2;Parent=Phyra93611;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 507000 507094 . - 0 ID=Phyra93611;Parent=Phyra93611;rank=1 scaffold_3 . exon 507000 507095 . - . ID=Phyra93611.1;Parent=Phyra93611;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_3 . repeat_region 512637 513183 . ? . description=dust scaffold_3 . repeat_region 513901 513940 . ? . description=trf scaffold_3 . biological_region 514353 514360 0.999 - . logic_name=eponine scaffold_3 . biological_region 514403 514403 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 514119 514649 . + . ID=Phyra73393;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000150;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 514119 514649 . + . ID=Phyra73393;Parent=Phyra73393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 514119 514649 . + 0 ID=Phyra73393;Parent=Phyra73393;rank=1 scaffold_3 . exon 514119 514649 . + . ID=Phyra73393.1;Parent=Phyra73393;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 515414 517030 . - . ID=Phyra73394;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000151;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 515414 517030 . - . ID=Phyra73394;Parent=Phyra73394;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 515414 515931 . - 0 ID=Phyra73394;Parent=Phyra73394;rank=6 scaffold_3 . exon 515414 515931 . - . ID=Phyra73394.6;Parent=Phyra73394;constitutive=1;ensembl_phase=1;rank=6 scaffold_3 . CDS 516016 516341 . - 0 ID=Phyra73394;Parent=Phyra73394;rank=5 scaffold_3 . exon 516016 516341 . - . ID=Phyra73394.5;Parent=Phyra73394;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_3 . CDS 516413 516504 . - 0 ID=Phyra73394;Parent=Phyra73394;rank=4 scaffold_3 . exon 516413 516504 . - . ID=Phyra73394.4;Parent=Phyra73394;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_3 . CDS 516584 516706 . - 0 ID=Phyra73394;Parent=Phyra73394;rank=3 scaffold_3 . exon 516584 516706 . - . ID=Phyra73394.3;Parent=Phyra73394;constitutive=1;rank=3 scaffold_3 . CDS 516779 516807 . - 0 ID=Phyra73394;Parent=Phyra73394;rank=2 scaffold_3 . exon 516779 516807 . - . ID=Phyra73394.2;Parent=Phyra73394;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 516880 517030 . - 0 ID=Phyra73394;Parent=Phyra73394;rank=1 scaffold_3 . exon 516880 517030 . - . ID=Phyra73394.1;Parent=Phyra73394;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 509479 512060 . - . ID=Phyra93612;biotype=protein_coding;external_name=C_scaffold_3000051;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 509479 512060 . - . ID=Phyra93612;Parent=Phyra93612;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 509479 509623 . - 0 ID=Phyra93612;Parent=Phyra93612;rank=7 scaffold_3 . exon 509479 509623 . - . ID=Phyra93612.7;Parent=Phyra93612;constitutive=1;ensembl_phase=2;rank=7 scaffold_3 . CDS 509699 510244 . - 0 ID=Phyra93612;Parent=Phyra93612;rank=6 scaffold_3 . exon 509699 510244 . - . ID=Phyra93612.6;Parent=Phyra93612;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_3 . CDS 510457 510577 . - 0 ID=Phyra93612;Parent=Phyra93612;rank=5 scaffold_3 . exon 510457 510577 . - . ID=Phyra93612.5;Parent=Phyra93612;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_3 . CDS 510938 511091 . - 0 ID=Phyra93612;Parent=Phyra93612;rank=4 scaffold_3 . exon 510938 511091 . - . ID=Phyra93612.4;Parent=Phyra93612;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_3 . CDS 511226 511417 . - 0 ID=Phyra93612;Parent=Phyra93612;rank=3 scaffold_3 . exon 511226 511417 . - . ID=Phyra93612.3;Parent=Phyra93612;constitutive=1;rank=3 scaffold_3 . CDS 511479 511772 . - 0 ID=Phyra93612;Parent=Phyra93612;rank=2 scaffold_3 . exon 511479 511772 . - . ID=Phyra93612.2;Parent=Phyra93612;constitutive=1;rank=2 scaffold_3 . CDS 511908 512060 . - 0 ID=Phyra93612;Parent=Phyra93612;rank=1 scaffold_3 . exon 511908 512060 . - . ID=Phyra93612.1;Parent=Phyra93612;constitutive=1;rank=1 scaffold_3 ensembl pseudogene 518450 518828 . + . ID=Phyra46774;biotype=pseudogene;external_name=gwEuk.3.112.1;logic_name=jgi_phyra1 scaffold_3 ensembl pseudogene 518450 518828 . + . ID=Phyra46774;Parent=Phyra46774;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_3 . exon 518450 518828 . + . ID=Phyra46774.1;Parent=Phyra46774;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl pseudogene 526967 527936 . + . ID=Phyra46792;biotype=pseudogene;external_name=gwEuk.3.130.1;logic_name=jgi_phyra1 scaffold_3 ensembl pseudogene 526967 527936 . + . ID=Phyra46792;Parent=Phyra46792;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_3 . exon 526967 527936 . + . ID=Phyra46792.1;Parent=Phyra46792;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 519835 521340 . - . ID=Phyra73396;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000153;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 519835 521340 . - . ID=Phyra73396;Parent=Phyra73396;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 519835 521340 . - 0 ID=Phyra73396;Parent=Phyra73396;rank=1 scaffold_3 . exon 519835 521340 . - . ID=Phyra73396.1;Parent=Phyra73396;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 521889 523433 . - . ID=Phyra73397;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000154;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 521889 523433 . - . ID=Phyra73397;Parent=Phyra73397;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 521889 523433 . - 0 ID=Phyra73397;Parent=Phyra73397;rank=1 scaffold_3 . exon 521889 523433 . - . ID=Phyra73397.1;Parent=Phyra73397;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 524360 525919 . - . ID=Phyra73398;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000155;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 524360 525919 . - . ID=Phyra73398;Parent=Phyra73398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 524360 525919 . - 0 ID=Phyra73398;Parent=Phyra73398;rank=1 scaffold_3 . exon 524360 525919 . - . ID=Phyra73398.1;Parent=Phyra73398;constitutive=1;rank=1 scaffold_3 . repeat_region 527941 534295 . ? . description=dust scaffold_3 . repeat_region 534339 534400 . ? . description=trf scaffold_3 . repeat_region 534479 534529 . ? . description=trf scaffold_3 . repeat_region 534485 534636 . ? . description=trf scaffold_3 . repeat_region 534549 534595 . ? . description=trf scaffold_3 . repeat_region 534729 534831 . ? . description=trf scaffold_3 . repeat_region 534751 534814 . ? . description=dust scaffold_3 . biological_region 534807 534810 0.999 - . logic_name=eponine scaffold_3 . biological_region 536378 536382 0.999 - . logic_name=eponine scaffold_3 . biological_region 536436 536438 0.999 + . logic_name=eponine scaffold_3 . biological_region 536517 536517 0.999 + . logic_name=eponine scaffold_3 . repeat_region 536743 536791 . ? . description=trf scaffold_3 . repeat_region 536749 536791 . ? . description=trf scaffold_3 . repeat_region 536759 536805 . ? . description=trf scaffold_3 . repeat_region 536939 537042 . ? . description=trf scaffold_3 . repeat_region 536959 537020 . ? . description=dust scaffold_3 . biological_region 537018 537022 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 536401 537156 . - . ID=Phyra73400;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000157;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 536401 537156 . - . ID=Phyra73400;Parent=Phyra73400;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 536401 537156 . - 0 ID=Phyra73400;Parent=Phyra73400;rank=1 scaffold_3 . exon 536401 537156 . - . ID=Phyra73400.1;Parent=Phyra73400;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 541681 542880 . - . ID=Phyra73402;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000159;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 541681 542880 . - . ID=Phyra73402;Parent=Phyra73402;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 541681 542682 . - 0 ID=Phyra73402;Parent=Phyra73402;rank=2 scaffold_3 . exon 541681 542682 . - . ID=Phyra73402.2;Parent=Phyra73402;constitutive=1;rank=2 scaffold_3 . CDS 542752 542880 . - 0 ID=Phyra73402;Parent=Phyra73402;rank=1 scaffold_3 . exon 542752 542880 . - . ID=Phyra73402.1;Parent=Phyra73402;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 543260 545935 . - . ID=Phyra73403;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000160;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 543260 545935 . - . ID=Phyra73403;Parent=Phyra73403;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 543260 545378 . - 0 ID=Phyra73403;Parent=Phyra73403;rank=2 scaffold_3 . exon 543260 545378 . - . ID=Phyra73403.2;Parent=Phyra73403;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 545802 545935 . - 0 ID=Phyra73403;Parent=Phyra73403;rank=1 scaffold_3 . exon 545802 545935 . - . ID=Phyra73403.1;Parent=Phyra73403;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 538477 541532 . + . ID=Phyra93613;biotype=protein_coding;external_name=C_scaffold_3000052;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 538477 541532 . + . ID=Phyra93613;Parent=Phyra93613;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 538477 539070 . + 0 ID=Phyra93613;Parent=Phyra93613;rank=1 scaffold_3 . exon 538477 539070 . + . ID=Phyra93613.1;Parent=Phyra93613;constitutive=1;rank=1 scaffold_3 . CDS 539127 539337 . + 0 ID=Phyra93613;Parent=Phyra93613;rank=2 scaffold_3 . exon 539127 539337 . + . ID=Phyra93613.2;Parent=Phyra93613;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 539437 539914 . + 0 ID=Phyra93613;Parent=Phyra93613;rank=3 scaffold_3 . exon 539437 539914 . + . ID=Phyra93613.3;Parent=Phyra93613;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_3 . CDS 540134 540566 . + 0 ID=Phyra93613;Parent=Phyra93613;rank=4 scaffold_3 . exon 540134 540566 . + . ID=Phyra93613.4;Parent=Phyra93613;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 541008 541083 . + 0 ID=Phyra93613;Parent=Phyra93613;rank=5 scaffold_3 . exon 541008 541083 . + . ID=Phyra93613.5;Parent=Phyra93613;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_3 . CDS 541108 541532 . + 0 ID=Phyra93613;Parent=Phyra93613;rank=6 scaffold_3 . exon 541108 541532 . + . ID=Phyra93613.6;Parent=Phyra93613;constitutive=1;ensembl_phase=1;rank=6 scaffold_3 . repeat_region 551221 551319 . ? . description=trf scaffold_3 . repeat_region 551226 551331 . ? . description=trf scaffold_3 . biological_region 553035 553038 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 548952 552389 . + . ID=Phyra73404;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000161;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 548952 552389 . + . ID=Phyra73404;Parent=Phyra73404;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 548952 552389 . + 0 ID=Phyra73404;Parent=Phyra73404;rank=1 scaffold_3 . exon 548952 552389 . + . ID=Phyra73404.1;Parent=Phyra73404;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 553160 553786 . + . ID=Phyra73405;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000162;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 553160 553786 . + . ID=Phyra73405;Parent=Phyra73405;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 553160 553786 . + 0 ID=Phyra73405;Parent=Phyra73405;rank=1 scaffold_3 . exon 553160 553786 . + . ID=Phyra73405.1;Parent=Phyra73405;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 554271 554861 . + . ID=Phyra73406;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000163;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 554271 554861 . + . ID=Phyra73406;Parent=Phyra73406;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 554271 554861 . + 0 ID=Phyra73406;Parent=Phyra73406;rank=1 scaffold_3 . exon 554271 554861 . + . ID=Phyra73406.1;Parent=Phyra73406;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 576714 586460 . + . ID=Phyra73407;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000164;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 576714 586460 . + . ID=Phyra73407;Parent=Phyra73407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 576714 577839 . + 0 ID=Phyra73407;Parent=Phyra73407;rank=1 scaffold_3 . exon 576714 577839 . + . ID=Phyra73407.1;Parent=Phyra73407;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 578074 578553 . + 0 ID=Phyra73407;Parent=Phyra73407;rank=2 scaffold_3 . CDS 578704 579951 . + 0 ID=Phyra73407;Parent=Phyra73407;rank=3 scaffold_3 . CDS 580012 582030 . + 0 ID=Phyra73407;Parent=Phyra73407;rank=4 scaffold_3 . CDS 582163 582570 . + 0 ID=Phyra73407;Parent=Phyra73407;rank=5 scaffold_3 . CDS 582642 582985 . + 0 ID=Phyra73407;Parent=Phyra73407;rank=6 scaffold_3 . CDS 583062 586460 . + 0 ID=Phyra73407;Parent=Phyra73407;rank=7 scaffold_3 . biological_region 583364 583366 0.999 + . logic_name=eponine scaffold_3 . biological_region 584954 584954 0.999 + . logic_name=eponine scaffold_3 . biological_region 585036 585036 0.999 + . logic_name=eponine scaffold_3 . biological_region 585570 585576 0.999 + . logic_name=eponine scaffold_3 . exon 578074 578553 . + . ID=Phyra73407.2;Parent=Phyra73407;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . exon 578704 579951 . + . ID=Phyra73407.3;Parent=Phyra73407;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_3 . exon 580012 582030 . + . ID=Phyra73407.4;Parent=Phyra73407;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_3 . exon 582163 582570 . + . ID=Phyra73407.5;Parent=Phyra73407;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_3 . exon 582642 582985 . + . ID=Phyra73407.6;Parent=Phyra73407;constitutive=1;ensembl_phase=1;rank=6 scaffold_3 . exon 583062 586460 . + . ID=Phyra73407.7;Parent=Phyra73407;constitutive=1;rank=7 scaffold_3 ensembl protein_coding_gene 586588 588445 . - . ID=Phyra73408;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000165;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 586588 588445 . - . ID=Phyra73408;Parent=Phyra73408;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 586588 587364 . - 0 ID=Phyra73408;Parent=Phyra73408;rank=5 scaffold_3 . exon 586588 587364 . - . ID=Phyra73408.5;Parent=Phyra73408;constitutive=1;rank=5 scaffold_3 . CDS 587420 587598 . - 0 ID=Phyra73408;Parent=Phyra73408;rank=4 scaffold_3 . exon 587420 587598 . - . ID=Phyra73408.4;Parent=Phyra73408;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 587662 588179 . - 0 ID=Phyra73408;Parent=Phyra73408;rank=3 scaffold_3 . CDS 588252 588349 . - 0 ID=Phyra73408;Parent=Phyra73408;rank=2 scaffold_3 . CDS 588410 588445 . - 0 ID=Phyra73408;Parent=Phyra73408;rank=1 scaffold_3 . repeat_region 591893 591900 . ? . description=dust scaffold_3 . repeat_region 591974 591986 . ? . description=dust scaffold_3 ensembl protein_coding_gene 588625 589299 . + . ID=Phyra71105;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000014;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 588625 589299 . + . ID=Phyra71105;Parent=Phyra71105;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 588625 589299 . + 0 ID=Phyra71105;Parent=Phyra71105;rank=1 scaffold_3 . exon 588625 589299 . + . ID=Phyra71105.1;Parent=Phyra71105;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 592604 593998 . + . ID=Phyra71106;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000015;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 592604 593998 . + . ID=Phyra71106;Parent=Phyra71106;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 592604 593998 . + 0 ID=Phyra71106;Parent=Phyra71106;rank=1 scaffold_3 . exon 592604 593998 . + . ID=Phyra71106.1;Parent=Phyra71106;constitutive=1;rank=1 scaffold_3 . exon 587662 588179 . - . ID=Phyra73408.3;Parent=Phyra73408;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_3 . exon 588252 588349 . - . ID=Phyra73408.2;Parent=Phyra73408;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . exon 588410 588445 . - . ID=Phyra73408.1;Parent=Phyra73408;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 589699 591962 . - . ID=Phyra73410;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000167;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 589699 591962 . - . ID=Phyra73410;Parent=Phyra73410;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 589699 589783 . - 0 ID=Phyra73410;Parent=Phyra73410;rank=7 scaffold_3 . exon 589699 589783 . - . ID=Phyra73410.7;Parent=Phyra73410;constitutive=1;ensembl_phase=2;rank=7 scaffold_3 . CDS 589861 590512 . - 0 ID=Phyra73410;Parent=Phyra73410;rank=6 scaffold_3 . exon 589861 590512 . - . ID=Phyra73410.6;Parent=Phyra73410;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_3 . CDS 590608 590746 . - 0 ID=Phyra73410;Parent=Phyra73410;rank=5 scaffold_3 . exon 590608 590746 . - . ID=Phyra73410.5;Parent=Phyra73410;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_3 . CDS 590831 591203 . - 0 ID=Phyra73410;Parent=Phyra73410;rank=4 scaffold_3 . exon 590831 591203 . - . ID=Phyra73410.4;Parent=Phyra73410;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 591274 591604 . - 0 ID=Phyra73410;Parent=Phyra73410;rank=3 scaffold_3 . exon 591274 591604 . - . ID=Phyra73410.3;Parent=Phyra73410;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_3 . CDS 591673 591822 . - 0 ID=Phyra73410;Parent=Phyra73410;rank=2 scaffold_3 . exon 591673 591822 . - . ID=Phyra73410.2;Parent=Phyra73410;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 591959 591962 . - 0 ID=Phyra73410;Parent=Phyra73410;rank=1 scaffold_3 . exon 591959 591962 . - . ID=Phyra73410.1;Parent=Phyra73410;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 594261 595100 . - . ID=Phyra73412;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000169;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 594261 595100 . - . ID=Phyra73412;Parent=Phyra73412;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 594261 595100 . - 0 ID=Phyra73412;Parent=Phyra73412;rank=1 scaffold_3 . exon 594261 595100 . - . ID=Phyra73412.1;Parent=Phyra73412;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 597059 598057 . + . ID=Phyra73413;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000170;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 597059 598057 . + . ID=Phyra73413;Parent=Phyra73413;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 597059 598057 . + 0 ID=Phyra73413;Parent=Phyra73413;rank=1 scaffold_3 . exon 597059 598057 . + . ID=Phyra73413.1;Parent=Phyra73413;constitutive=1;rank=1 scaffold_3 . biological_region 597861 597863 0.999 + . logic_name=eponine scaffold_3 . biological_region 597901 597905 0.999 + . logic_name=eponine scaffold_3 . biological_region 598681 598682 0.999 + . logic_name=eponine scaffold_3 . biological_region 598974 598976 0.999 + . logic_name=eponine scaffold_3 . biological_region 599274 599275 0.999 - . logic_name=eponine scaffold_3 . biological_region 599793 599793 0.999 - . logic_name=eponine scaffold_3 . repeat_region 602419 602727 . ? . description=trf scaffold_3 ensembl protein_coding_gene 598988 599875 . - . ID=Phyra73414;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000171;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 598988 599875 . - . ID=Phyra73414;Parent=Phyra73414;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 598988 599875 . - 0 ID=Phyra73414;Parent=Phyra73414;rank=1 scaffold_3 . exon 598988 599875 . - . ID=Phyra73414.1;Parent=Phyra73414;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 601342 604914 . + . ID=Phyra73415;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000172;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 601342 604914 . + . ID=Phyra73415;Parent=Phyra73415;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 601342 604914 . + 0 ID=Phyra73415;Parent=Phyra73415;rank=1 scaffold_3 . exon 601342 604914 . + . ID=Phyra73415.1;Parent=Phyra73415;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 605064 609832 . - . ID=Phyra73416;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000173;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 605064 609832 . - . ID=Phyra73416;Parent=Phyra73416;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 605064 605115 . - 0 ID=Phyra73416;Parent=Phyra73416;rank=5 scaffold_3 . exon 605064 605115 . - . ID=Phyra73416.5;Parent=Phyra73416;constitutive=1;ensembl_phase=2;rank=5 scaffold_3 . CDS 605187 605427 . - 0 ID=Phyra73416;Parent=Phyra73416;rank=4 scaffold_3 . exon 605187 605427 . - . ID=Phyra73416.4;Parent=Phyra73416;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_3 . CDS 605504 607406 . - 0 ID=Phyra73416;Parent=Phyra73416;rank=3 scaffold_3 . exon 605504 607406 . - . ID=Phyra73416.3;Parent=Phyra73416;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 607486 609261 . - 0 ID=Phyra73416;Parent=Phyra73416;rank=2 scaffold_3 . exon 607486 609261 . - . ID=Phyra73416.2;Parent=Phyra73416;constitutive=1;rank=2 scaffold_3 . CDS 609329 609832 . - 0 ID=Phyra73416;Parent=Phyra73416;rank=1 scaffold_3 . repeat_region 609311 609321 . ? . description=dust scaffold_3 . repeat_region 610428 610445 . ? . description=dust scaffold_3 . exon 609329 609832 . - . ID=Phyra73416.1;Parent=Phyra73416;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 610149 614681 . + . ID=Phyra73417;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000174;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 610149 614681 . + . ID=Phyra73417;Parent=Phyra73417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 610149 610379 . + 0 ID=Phyra73417;Parent=Phyra73417;rank=1 scaffold_3 . exon 610149 610379 . + . ID=Phyra73417.1;Parent=Phyra73417;constitutive=1;rank=1 scaffold_3 . CDS 610450 610737 . + 0 ID=Phyra73417;Parent=Phyra73417;rank=2 scaffold_3 . exon 610450 610737 . + . ID=Phyra73417.2;Parent=Phyra73417;constitutive=1;rank=2 scaffold_3 . CDS 610812 611023 . + 0 ID=Phyra73417;Parent=Phyra73417;rank=3 scaffold_3 . exon 610812 611023 . + . ID=Phyra73417.3;Parent=Phyra73417;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_3 . CDS 611088 611214 . + 0 ID=Phyra73417;Parent=Phyra73417;rank=4 scaffold_3 . exon 611088 611214 . + . ID=Phyra73417.4;Parent=Phyra73417;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 611278 612580 . + 0 ID=Phyra73417;Parent=Phyra73417;rank=5 scaffold_3 . exon 611278 612580 . + . ID=Phyra73417.5;Parent=Phyra73417;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_3 . CDS 612686 613270 . + 0 ID=Phyra73417;Parent=Phyra73417;rank=6 scaffold_3 . exon 612686 613270 . + . ID=Phyra73417.6;Parent=Phyra73417;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_3 . CDS 613298 613390 . + 0 ID=Phyra73417;Parent=Phyra73417;rank=7 scaffold_3 . exon 613298 613390 . + . ID=Phyra73417.7;Parent=Phyra73417;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_3 . CDS 613597 613806 . + 0 ID=Phyra73417;Parent=Phyra73417;rank=8 scaffold_3 . exon 613597 613806 . + . ID=Phyra73417.8;Parent=Phyra73417;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_3 . CDS 613876 614681 . + 0 ID=Phyra73417;Parent=Phyra73417;rank=9 scaffold_3 . exon 613876 614681 . + . ID=Phyra73417.9;Parent=Phyra73417;constitutive=1;ensembl_phase=1;rank=9 scaffold_3 ensembl protein_coding_gene 615599 616027 . + . ID=Phyra73418;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000175;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 615599 616027 . + . ID=Phyra73418;Parent=Phyra73418;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 615599 616027 . + 0 ID=Phyra73418;Parent=Phyra73418;rank=1 scaffold_3 . exon 615599 616027 . + . ID=Phyra73418.1;Parent=Phyra73418;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 625632 627900 . - . ID=Phyra73419;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000176;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 625632 627900 . - . ID=Phyra73419;Parent=Phyra73419;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 625632 625976 . - 0 ID=Phyra73419;Parent=Phyra73419;rank=8 scaffold_3 . exon 625632 625976 . - . ID=Phyra73419.8;Parent=Phyra73419;constitutive=1;rank=8 scaffold_3 . CDS 626048 626083 . - 0 ID=Phyra73419;Parent=Phyra73419;rank=7 scaffold_3 . exon 626048 626083 . - . ID=Phyra73419.7;Parent=Phyra73419;constitutive=1;rank=7 scaffold_3 . CDS 626162 626342 . - 0 ID=Phyra73419;Parent=Phyra73419;rank=6 scaffold_3 . exon 626162 626342 . - . ID=Phyra73419.6;Parent=Phyra73419;constitutive=1;ensembl_phase=2;rank=6 scaffold_3 . CDS 626411 626472 . - 0 ID=Phyra73419;Parent=Phyra73419;rank=5 scaffold_3 . exon 626411 626472 . - . ID=Phyra73419.5;Parent=Phyra73419;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_3 . CDS 626531 626610 . - 0 ID=Phyra73419;Parent=Phyra73419;rank=4 scaffold_3 . exon 626531 626610 . - . ID=Phyra73419.4;Parent=Phyra73419;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 626683 627131 . - 0 ID=Phyra73419;Parent=Phyra73419;rank=3 scaffold_3 . exon 626683 627131 . - . ID=Phyra73419.3;Parent=Phyra73419;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 627163 627185 . - 0 ID=Phyra73419;Parent=Phyra73419;rank=2 scaffold_3 . exon 627163 627185 . - . ID=Phyra73419.2;Parent=Phyra73419;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 627301 627900 . - 0 ID=Phyra73419;Parent=Phyra73419;rank=1 scaffold_3 . exon 627301 627900 . - . ID=Phyra73419.1;Parent=Phyra73419;constitutive=1;rank=1 scaffold_3 . biological_region 629959 629967 0.999 + . logic_name=eponine scaffold_3 . biological_region 630041 630043 0.999 - . logic_name=eponine scaffold_3 . biological_region 630056 630062 0.999 + . logic_name=eponine scaffold_3 . repeat_region 630231 630239 . ? . description=dust scaffold_3 . repeat_region 630277 630285 . ? . description=dust scaffold_3 . repeat_region 631200 631215 . ? . description=dust scaffold_3 . biological_region 632282 632284 0.999 - . logic_name=eponine scaffold_3 . repeat_region 633278 633285 . ? . description=dust scaffold_3 . biological_region 634927 634928 0.999 - . logic_name=eponine scaffold_3 . repeat_region 635442 635449 . ? . description=dust scaffold_3 ensembl protein_coding_gene 628141 630123 . - . ID=Phyra73420;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000177;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 628141 630123 . - . ID=Phyra73420;Parent=Phyra73420;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 628141 628334 . - 0 ID=Phyra73420;Parent=Phyra73420;rank=5 scaffold_3 . exon 628141 628334 . - . ID=Phyra73420.5;Parent=Phyra73420;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 628402 628541 . - 0 ID=Phyra73420;Parent=Phyra73420;rank=4 scaffold_3 . exon 628402 628541 . - . ID=Phyra73420.4;Parent=Phyra73420;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 628627 628676 . - 0 ID=Phyra73420;Parent=Phyra73420;rank=3 scaffold_3 . exon 628627 628676 . - . ID=Phyra73420.3;Parent=Phyra73420;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_3 . CDS 628751 629307 . - 0 ID=Phyra73420;Parent=Phyra73420;rank=2 scaffold_3 . exon 628751 629307 . - . ID=Phyra73420.2;Parent=Phyra73420;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 629385 630123 . - 0 ID=Phyra73420;Parent=Phyra73420;rank=1 scaffold_3 . exon 629385 630123 . - . ID=Phyra73420.1;Parent=Phyra73420;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 632107 634972 . + . ID=Phyra73421;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000178;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 632107 634972 . + . ID=Phyra73421;Parent=Phyra73421;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 632107 632504 . + 0 ID=Phyra73421;Parent=Phyra73421;rank=1 scaffold_3 . exon 632107 632504 . + . ID=Phyra73421.1;Parent=Phyra73421;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 632583 632684 . + 0 ID=Phyra73421;Parent=Phyra73421;rank=2 scaffold_3 . exon 632583 632684 . + . ID=Phyra73421.2;Parent=Phyra73421;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_3 . CDS 632743 632808 . + 0 ID=Phyra73421;Parent=Phyra73421;rank=3 scaffold_3 . exon 632743 632808 . + . ID=Phyra73421.3;Parent=Phyra73421;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_3 . CDS 632873 632947 . + 0 ID=Phyra73421;Parent=Phyra73421;rank=4 scaffold_3 . exon 632873 632947 . + . ID=Phyra73421.4;Parent=Phyra73421;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_3 . CDS 633016 633102 . + 0 ID=Phyra73421;Parent=Phyra73421;rank=5 scaffold_3 . exon 633016 633102 . + . ID=Phyra73421.5;Parent=Phyra73421;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_3 . CDS 633168 633227 . + 0 ID=Phyra73421;Parent=Phyra73421;rank=6 scaffold_3 . exon 633168 633227 . + . ID=Phyra73421.6;Parent=Phyra73421;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_3 . CDS 633298 633366 . + 0 ID=Phyra73421;Parent=Phyra73421;rank=7 scaffold_3 . exon 633298 633366 . + . ID=Phyra73421.7;Parent=Phyra73421;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_3 . CDS 633514 633650 . + 0 ID=Phyra73421;Parent=Phyra73421;rank=8 scaffold_3 . exon 633514 633650 . + . ID=Phyra73421.8;Parent=Phyra73421;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_3 . CDS 633723 634972 . + 0 ID=Phyra73421;Parent=Phyra73421;rank=9 scaffold_3 . exon 633723 634972 . + . ID=Phyra73421.9;Parent=Phyra73421;constitutive=1;ensembl_phase=1;rank=9 scaffold_3 ensembl protein_coding_gene 637039 639138 . - . ID=Phyra73422;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000179;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 637039 639138 . - . ID=Phyra73422;Parent=Phyra73422;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 637039 639138 . - 0 ID=Phyra73422;Parent=Phyra73422;rank=1 scaffold_3 . exon 637039 639138 . - . ID=Phyra73422.1;Parent=Phyra73422;constitutive=1;rank=1 scaffold_3 . repeat_region 639073 639096 . ? . description=trf scaffold_3 . repeat_region 644968 645170 . ? . description=trf scaffold_3 . repeat_region 644983 645170 . ? . description=trf scaffold_3 . repeat_region 645152 645269 . ? . description=trf scaffold_3 . repeat_region 645178 645242 . ? . description=trf scaffold_3 ensembl protein_coding_gene 647007 648730 . + . ID=Phyra71107;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000016;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 647007 648730 . + . ID=Phyra71107;Parent=Phyra71107;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 647007 647039 . + 0 ID=Phyra71107;Parent=Phyra71107;rank=1 scaffold_3 . exon 647007 647039 . + . ID=Phyra71107.1;Parent=Phyra71107;constitutive=1;rank=1 scaffold_3 . CDS 647097 648343 . + 0 ID=Phyra71107;Parent=Phyra71107;rank=2 scaffold_3 . exon 647097 648343 . + . ID=Phyra71107.2;Parent=Phyra71107;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 648414 648531 . + 0 ID=Phyra71107;Parent=Phyra71107;rank=3 scaffold_3 . CDS 648593 648730 . + 0 ID=Phyra71107;Parent=Phyra71107;rank=4 scaffold_3 ensembl protein_coding_gene 640063 641865 . - . ID=Phyra73423;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000180;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 640063 641865 . - . ID=Phyra73423;Parent=Phyra73423;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 640063 641865 . - 0 ID=Phyra73423;Parent=Phyra73423;rank=1 scaffold_3 . exon 640063 641865 . - . ID=Phyra73423.1;Parent=Phyra73423;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 643354 644037 . - . ID=Phyra73424;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000181;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 643354 644037 . - . ID=Phyra73424;Parent=Phyra73424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 643354 644037 . - 0 ID=Phyra73424;Parent=Phyra73424;rank=1 scaffold_3 . exon 643354 644037 . - . ID=Phyra73424.1;Parent=Phyra73424;constitutive=1;rank=1 scaffold_3 . biological_region 647794 647798 0.999 + . logic_name=eponine scaffold_3 . biological_region 648335 648335 0.999 - . logic_name=eponine scaffold_3 . biological_region 649257 649259 0.999 + . logic_name=eponine scaffold_3 . biological_region 649328 649329 0.999 + . logic_name=eponine scaffold_3 . biological_region 655114 655114 0.999 + . logic_name=eponine scaffold_3 . biological_region 656851 656854 0.999 + . logic_name=eponine scaffold_3 . exon 648414 648531 . + . ID=Phyra71107.3;Parent=Phyra71107;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . exon 648593 648730 . + . ID=Phyra71107.4;Parent=Phyra71107;constitutive=1;rank=4 scaffold_3 ensembl protein_coding_gene 648951 650339 . + . ID=Phyra71108;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000017;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 648951 650339 . + . ID=Phyra71108;Parent=Phyra71108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 648951 650339 . + 0 ID=Phyra71108;Parent=Phyra71108;rank=1 scaffold_3 . exon 648951 650339 . + . ID=Phyra71108.1;Parent=Phyra71108;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 653920 655437 . - . ID=Phyra73427;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000184;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 653920 655437 . - . ID=Phyra73427;Parent=Phyra73427;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 653920 654264 . - 0 ID=Phyra73427;Parent=Phyra73427;rank=4 scaffold_3 . exon 653920 654264 . - . ID=Phyra73427.4;Parent=Phyra73427;constitutive=1;rank=4 scaffold_3 . CDS 654346 654425 . - 0 ID=Phyra73427;Parent=Phyra73427;rank=3 scaffold_3 . exon 654346 654425 . - . ID=Phyra73427.3;Parent=Phyra73427;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 654502 654727 . - 0 ID=Phyra73427;Parent=Phyra73427;rank=2 scaffold_3 . exon 654502 654727 . - . ID=Phyra73427.2;Parent=Phyra73427;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 654805 655437 . - 0 ID=Phyra73427;Parent=Phyra73427;rank=1 scaffold_3 . exon 654805 655437 . - . ID=Phyra73427.1;Parent=Phyra73427;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 655590 656462 . + . ID=Phyra73428;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000185;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 655590 656462 . + . ID=Phyra73428;Parent=Phyra73428;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 655590 656462 . + 0 ID=Phyra73428;Parent=Phyra73428;rank=1 scaffold_3 . exon 655590 656462 . + . ID=Phyra73428.1;Parent=Phyra73428;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 656585 659552 . - . ID=Phyra73429;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000186;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 656585 659552 . - . ID=Phyra73429;Parent=Phyra73429;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 656585 657006 . - 0 ID=Phyra73429;Parent=Phyra73429;rank=7 scaffold_3 . exon 656585 657006 . - . ID=Phyra73429.7;Parent=Phyra73429;constitutive=1;ensembl_phase=1;rank=7 scaffold_3 . CDS 657075 657453 . - 0 ID=Phyra73429;Parent=Phyra73429;rank=6 scaffold_3 . exon 657075 657453 . - . ID=Phyra73429.6;Parent=Phyra73429;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_3 . CDS 657520 657729 . - 0 ID=Phyra73429;Parent=Phyra73429;rank=5 scaffold_3 . CDS 657936 658321 . - 0 ID=Phyra73429;Parent=Phyra73429;rank=4 scaffold_3 . CDS 658541 658753 . - 0 ID=Phyra73429;Parent=Phyra73429;rank=3 scaffold_3 . CDS 658881 659184 . - 0 ID=Phyra73429;Parent=Phyra73429;rank=2 scaffold_3 . CDS 659265 659552 . - 0 ID=Phyra73429;Parent=Phyra73429;rank=1 scaffold_3 . repeat_region 660884 660939 . ? . description=dust scaffold_3 . exon 657520 657729 . - . ID=Phyra73429.5;Parent=Phyra73429;constitutive=1;rank=5 scaffold_3 . exon 657936 658321 . - . ID=Phyra73429.4;Parent=Phyra73429;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 . exon 658541 658753 . - . ID=Phyra73429.3;Parent=Phyra73429;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_3 . exon 658881 659184 . - . ID=Phyra73429.2;Parent=Phyra73429;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . exon 659265 659552 . - . ID=Phyra73429.1;Parent=Phyra73429;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 660566 661753 . - . ID=Phyra73430;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000187;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 660566 661753 . - . ID=Phyra73430;Parent=Phyra73430;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 660566 661753 . - 0 ID=Phyra73430;Parent=Phyra73430;rank=1 scaffold_3 . exon 660566 661753 . - . ID=Phyra73430.1;Parent=Phyra73430;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 662411 663595 . - . ID=Phyra73431;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000188;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 662411 663595 . - . ID=Phyra73431;Parent=Phyra73431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 662411 663595 . - 0 ID=Phyra73431;Parent=Phyra73431;rank=1 scaffold_3 . exon 662411 663595 . - . ID=Phyra73431.1;Parent=Phyra73431;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 663760 668469 . - . ID=Phyra73432;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000189;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 663760 668469 . - . ID=Phyra73432;Parent=Phyra73432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 663760 663851 . - 0 ID=Phyra73432;Parent=Phyra73432;rank=6 scaffold_3 . exon 663760 663851 . - . ID=Phyra73432.6;Parent=Phyra73432;constitutive=1;ensembl_phase=1;rank=6 scaffold_3 . CDS 663906 663983 . - 0 ID=Phyra73432;Parent=Phyra73432;rank=5 scaffold_3 . exon 663906 663983 . - . ID=Phyra73432.5;Parent=Phyra73432;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 664046 664252 . - 0 ID=Phyra73432;Parent=Phyra73432;rank=4 scaffold_3 . exon 664046 664252 . - . ID=Phyra73432.4;Parent=Phyra73432;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 664459 664482 . - 0 ID=Phyra73432;Parent=Phyra73432;rank=3 scaffold_3 . exon 664459 664482 . - . ID=Phyra73432.3;Parent=Phyra73432;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 664698 665074 . - 0 ID=Phyra73432;Parent=Phyra73432;rank=2 scaffold_3 . exon 664698 665074 . - . ID=Phyra73432.2;Parent=Phyra73432;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 665306 668469 . - 0 ID=Phyra73432;Parent=Phyra73432;rank=1 scaffold_3 . exon 665306 668469 . - . ID=Phyra73432.1;Parent=Phyra73432;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . biological_region 672329 672334 0.999 - . logic_name=eponine scaffold_3 . biological_region 672653 672656 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 668800 670953 . - . ID=Phyra46841;biotype=protein_coding;external_name=gwEuk.3.179.1;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 668800 670953 . - . ID=Phyra46841;Parent=Phyra46841;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 668800 668891 . - 0 ID=Phyra46841;Parent=Phyra46841;rank=4 scaffold_3 . exon 668800 668891 . - . ID=Phyra46841.4;Parent=Phyra46841;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 670217 670528 . - 0 ID=Phyra46841;Parent=Phyra46841;rank=3 scaffold_3 . exon 670217 670528 . - . ID=Phyra46841.3;Parent=Phyra46841;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 670596 670774 . - 0 ID=Phyra46841;Parent=Phyra46841;rank=2 scaffold_3 . exon 670596 670774 . - . ID=Phyra46841.2;Parent=Phyra46841;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 670835 670953 . - 0 ID=Phyra46841;Parent=Phyra46841;rank=1 scaffold_3 . exon 670835 670953 . - . ID=Phyra46841.1;Parent=Phyra46841;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 671218 672859 . - . ID=Phyra73434;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000191;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 671218 672859 . - . ID=Phyra73434;Parent=Phyra73434;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 671218 672389 . - 0 ID=Phyra73434;Parent=Phyra73434;rank=2 scaffold_3 . exon 671218 672389 . - . ID=Phyra73434.2;Parent=Phyra73434;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 672460 672859 . - 0 ID=Phyra73434;Parent=Phyra73434;rank=1 scaffold_3 . exon 672460 672859 . - . ID=Phyra73434.1;Parent=Phyra73434;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . repeat_region 678781 678788 . ? . description=dust scaffold_3 . repeat_region 683375 683384 . ? . description=dust scaffold_3 . repeat_region 684609 684632 . ? . description=trf scaffold_3 . repeat_region 684609 684632 . ? . description=dust scaffold_3 . repeat_region 684676 684687 . ? . description=dust scaffold_3 . repeat_region 684697 684803 . ? . description=dust scaffold_3 . repeat_region 684806 684925 . ? . description=dust scaffold_3 . repeat_region 684904 684925 . ? . description=trf scaffold_3 ensembl protein_coding_gene 678438 679590 . - . ID=Phyra73435;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000192;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 678438 679590 . - . ID=Phyra73435;Parent=Phyra73435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 678438 678464 . - 0 ID=Phyra73435;Parent=Phyra73435;rank=3 scaffold_3 . exon 678438 678464 . - . ID=Phyra73435.3;Parent=Phyra73435;constitutive=1;rank=3 scaffold_3 . CDS 678644 678757 . - 0 ID=Phyra73435;Parent=Phyra73435;rank=2 scaffold_3 . exon 678644 678757 . - . ID=Phyra73435.2;Parent=Phyra73435;constitutive=1;rank=2 scaffold_3 . CDS 678820 679590 . - 0 ID=Phyra73435;Parent=Phyra73435;rank=1 scaffold_3 . exon 678820 679590 . - . ID=Phyra73435.1;Parent=Phyra73435;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 679837 682260 . - . ID=Phyra73436;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000193;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 679837 682260 . - . ID=Phyra73436;Parent=Phyra73436;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 679837 682260 . - 0 ID=Phyra73436;Parent=Phyra73436;rank=1 scaffold_3 . exon 679837 682260 . - . ID=Phyra73436.1;Parent=Phyra73436;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 683393 684189 . + . ID=Phyra73437;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000194;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 683393 684189 . + . ID=Phyra73437;Parent=Phyra73437;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 683393 683524 . + 0 ID=Phyra73437;Parent=Phyra73437;rank=1 scaffold_3 . exon 683393 683524 . + . ID=Phyra73437.1;Parent=Phyra73437;constitutive=1;rank=1 scaffold_3 . CDS 683593 684189 . + 0 ID=Phyra73437;Parent=Phyra73437;rank=2 scaffold_3 . exon 683593 684189 . + . ID=Phyra73437.2;Parent=Phyra73437;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 686243 688318 . + . ID=Phyra73438;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000195;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 686243 688318 . + . ID=Phyra73438;Parent=Phyra73438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 686243 688238 . + 0 ID=Phyra73438;Parent=Phyra73438;rank=1 scaffold_3 . exon 686243 688238 . + . ID=Phyra73438.1;Parent=Phyra73438;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 688314 688318 . + 0 ID=Phyra73438;Parent=Phyra73438;rank=2 scaffold_3 . exon 688314 688318 . + . ID=Phyra73438.2;Parent=Phyra73438;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 690622 693057 . - . ID=Phyra73439;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000196;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 690622 693057 . - . ID=Phyra73439;Parent=Phyra73439;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 690622 693057 . - 0 ID=Phyra73439;Parent=Phyra73439;rank=1 scaffold_3 . exon 690622 693057 . - . ID=Phyra73439.1;Parent=Phyra73439;constitutive=1;rank=1 scaffold_3 . biological_region 701635 701637 0.999 + . logic_name=eponine scaffold_3 . biological_region 701987 701991 0.999 + . logic_name=eponine scaffold_3 . biological_region 703317 703321 0.999 - . logic_name=eponine scaffold_3 . repeat_region 703364 703413 . ? . description=dust scaffold_3 . biological_region 704991 704995 0.999 + . logic_name=eponine scaffold_3 . repeat_region 705305 708951 . ? . description=dust scaffold_3 ensembl protein_coding_gene 697216 697875 . - . ID=Phyra73440;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000197;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 697216 697875 . - . ID=Phyra73440;Parent=Phyra73440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 697216 697323 . - 0 ID=Phyra73440;Parent=Phyra73440;rank=2 scaffold_3 . exon 697216 697323 . - . ID=Phyra73440.2;Parent=Phyra73440;constitutive=1;rank=2 scaffold_3 . CDS 697441 697875 . - 0 ID=Phyra73440;Parent=Phyra73440;rank=1 scaffold_3 . exon 697441 697875 . - . ID=Phyra73440.1;Parent=Phyra73440;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 698640 699989 . + . ID=Phyra73441;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000198;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 698640 699989 . + . ID=Phyra73441;Parent=Phyra73441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 698640 699989 . + 0 ID=Phyra73441;Parent=Phyra73441;rank=1 scaffold_3 . exon 698640 699989 . + . ID=Phyra73441.1;Parent=Phyra73441;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 700451 703290 . + . ID=Phyra73442;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000199;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 700451 703290 . + . ID=Phyra73442;Parent=Phyra73442;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 700451 700895 . + 0 ID=Phyra73442;Parent=Phyra73442;rank=1 scaffold_3 . exon 700451 700895 . + . ID=Phyra73442.1;Parent=Phyra73442;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 701078 701283 . + 0 ID=Phyra73442;Parent=Phyra73442;rank=2 scaffold_3 . exon 701078 701283 . + . ID=Phyra73442.2;Parent=Phyra73442;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 701329 701635 . + 0 ID=Phyra73442;Parent=Phyra73442;rank=3 scaffold_3 . exon 701329 701635 . + . ID=Phyra73442.3;Parent=Phyra73442;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 701713 702018 . + 0 ID=Phyra73442;Parent=Phyra73442;rank=4 scaffold_3 . exon 701713 702018 . + . ID=Phyra73442.4;Parent=Phyra73442;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 702063 702259 . + 0 ID=Phyra73442;Parent=Phyra73442;rank=5 scaffold_3 . exon 702063 702259 . + . ID=Phyra73442.5;Parent=Phyra73442;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 702310 703290 . + 0 ID=Phyra73442;Parent=Phyra73442;rank=6 scaffold_3 . exon 702310 703290 . + . ID=Phyra73442.6;Parent=Phyra73442;constitutive=1;rank=6 scaffold_3 . repeat_region 713511 713534 . ? . description=trf scaffold_3 . repeat_region 713788 713844 . ? . description=trf scaffold_3 . repeat_region 714926 715076 . ? . description=trf scaffold_3 . repeat_region 714936 715076 . ? . description=trf scaffold_3 ensembl protein_coding_gene 713537 713887 . - . ID=Phyra73443;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000200;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 713537 713887 . - . ID=Phyra73443;Parent=Phyra73443;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 713537 713887 . - 0 ID=Phyra73443;Parent=Phyra73443;rank=1 scaffold_3 . exon 713537 713887 . - . ID=Phyra73443.1;Parent=Phyra73443;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 715506 716939 . - . ID=Phyra73444;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000201;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 715506 716939 . - . ID=Phyra73444;Parent=Phyra73444;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 715506 715612 . - 0 ID=Phyra73444;Parent=Phyra73444;rank=2 scaffold_3 . exon 715506 715612 . - . ID=Phyra73444.2;Parent=Phyra73444;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 715838 716939 . - 0 ID=Phyra73444;Parent=Phyra73444;rank=1 scaffold_3 . exon 715838 716939 . - . ID=Phyra73444.1;Parent=Phyra73444;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . repeat_region 717701 717883 . ? . description=dust scaffold_3 . repeat_region 718041 718055 . ? . description=dust scaffold_3 . repeat_region 718867 718942 . ? . description=dust scaffold_3 . repeat_region 720000 720009 . ? . description=dust scaffold_3 . repeat_region 721135 721147 . ? . description=dust scaffold_3 . biological_region 726785 726786 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 718973 719422 . + . ID=Phyra73445;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000202;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 718973 719422 . + . ID=Phyra73445;Parent=Phyra73445;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 718973 719342 . + 0 ID=Phyra73445;Parent=Phyra73445;rank=1 scaffold_3 . exon 718973 719342 . + . ID=Phyra73445.1;Parent=Phyra73445;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 719418 719422 . + 0 ID=Phyra73445;Parent=Phyra73445;rank=2 scaffold_3 . exon 719418 719422 . + . ID=Phyra73445.2;Parent=Phyra73445;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 721977 724052 . - . ID=Phyra73446;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000203;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 721977 724052 . - . ID=Phyra73446;Parent=Phyra73446;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 721977 721981 . - 0 ID=Phyra73446;Parent=Phyra73446;rank=2 scaffold_3 . exon 721977 721981 . - . ID=Phyra73446.2;Parent=Phyra73446;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 722057 724052 . - 0 ID=Phyra73446;Parent=Phyra73446;rank=1 scaffold_3 . exon 722057 724052 . - . ID=Phyra73446.1;Parent=Phyra73446;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 725586 728263 . - . ID=Phyra73447;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000204;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 725586 728263 . - . ID=Phyra73447;Parent=Phyra73447;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 725586 726105 . - 0 ID=Phyra73447;Parent=Phyra73447;rank=10 scaffold_3 . exon 725586 726105 . - . ID=Phyra73447.10;Parent=Phyra73447;constitutive=1;ensembl_phase=2;rank=10 scaffold_3 . CDS 726177 726213 . - 0 ID=Phyra73447;Parent=Phyra73447;rank=9 scaffold_3 . exon 726177 726213 . - . ID=Phyra73447.9;Parent=Phyra73447;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_3 . CDS 726476 726548 . - 0 ID=Phyra73447;Parent=Phyra73447;rank=8 scaffold_3 . exon 726476 726548 . - . ID=Phyra73447.8;Parent=Phyra73447;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_3 . CDS 726623 726688 . - 0 ID=Phyra73447;Parent=Phyra73447;rank=7 scaffold_3 . exon 726623 726688 . - . ID=Phyra73447.7;Parent=Phyra73447;constitutive=1;rank=7 scaffold_3 . CDS 727024 727091 . - 0 ID=Phyra73447;Parent=Phyra73447;rank=6 scaffold_3 . exon 727024 727091 . - . ID=Phyra73447.6;Parent=Phyra73447;constitutive=1;ensembl_phase=1;rank=6 scaffold_3 . CDS 727159 727354 . - 0 ID=Phyra73447;Parent=Phyra73447;rank=5 scaffold_3 . CDS 727421 727559 . - 0 ID=Phyra73447;Parent=Phyra73447;rank=4 scaffold_3 . CDS 727624 727864 . - 0 ID=Phyra73447;Parent=Phyra73447;rank=3 scaffold_3 . CDS 727938 728067 . - 0 ID=Phyra73447;Parent=Phyra73447;rank=2 scaffold_3 . CDS 728129 728263 . - 0 ID=Phyra73447;Parent=Phyra73447;rank=1 scaffold_3 ensembl protein_coding_gene 735755 736384 . - . ID=Phyra46855;biotype=protein_coding;external_name=gwEuk.3.193.1;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 735755 736384 . - . ID=Phyra46855;Parent=Phyra46855;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 735755 736384 . - 0 ID=Phyra46855;Parent=Phyra46855;rank=1 scaffold_3 . exon 735755 736384 . - . ID=Phyra46855.1;Parent=Phyra46855;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 730963 731808 . + . ID=Phyra71109;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000018;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 730963 731808 . + . ID=Phyra71109;Parent=Phyra71109;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 730963 731808 . + 0 ID=Phyra71109;Parent=Phyra71109;rank=1 scaffold_3 . exon 730963 731808 . + . ID=Phyra71109.1;Parent=Phyra71109;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 732046 733986 . - . ID=Phyra71110;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000019;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 732046 733986 . - . ID=Phyra71110;Parent=Phyra71110;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 732046 733200 . - 0 ID=Phyra71110;Parent=Phyra71110;rank=4 scaffold_3 . exon 732046 733200 . - . ID=Phyra71110.4;Parent=Phyra71110;constitutive=1;rank=4 scaffold_3 . CDS 733273 733497 . - 0 ID=Phyra71110;Parent=Phyra71110;rank=3 scaffold_3 . exon 733273 733497 . - . ID=Phyra71110.3;Parent=Phyra71110;constitutive=1;rank=3 scaffold_3 . CDS 733593 733874 . - 0 ID=Phyra71110;Parent=Phyra71110;rank=2 scaffold_3 . exon 733593 733874 . - . ID=Phyra71110.2;Parent=Phyra71110;constitutive=1;rank=2 scaffold_3 . CDS 733942 733986 . - 0 ID=Phyra71110;Parent=Phyra71110;rank=1 scaffold_3 . exon 733942 733986 . - . ID=Phyra71110.1;Parent=Phyra71110;constitutive=1;rank=1 scaffold_3 . exon 727159 727354 . - . ID=Phyra73447.5;Parent=Phyra73447;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_3 . exon 727421 727559 . - . ID=Phyra73447.4;Parent=Phyra73447;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . exon 727624 727864 . - . ID=Phyra73447.3;Parent=Phyra73447;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_3 . exon 727938 728067 . - . ID=Phyra73447.2;Parent=Phyra73447;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . exon 728129 728263 . - . ID=Phyra73447.1;Parent=Phyra73447;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 728670 730578 . + . ID=Phyra73448;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000205;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 728670 730578 . + . ID=Phyra73448;Parent=Phyra73448;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 728670 728792 . + 0 ID=Phyra73448;Parent=Phyra73448;rank=1 scaffold_3 . exon 728670 728792 . + . ID=Phyra73448.1;Parent=Phyra73448;constitutive=1;rank=1 scaffold_3 . CDS 728878 730578 . + 0 ID=Phyra73448;Parent=Phyra73448;rank=2 scaffold_3 . exon 728878 730578 . + . ID=Phyra73448.2;Parent=Phyra73448;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 736699 737425 . + . ID=Phyra73452;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000209;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 736699 737425 . + . ID=Phyra73452;Parent=Phyra73452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 736699 736893 . + 0 ID=Phyra73452;Parent=Phyra73452;rank=1 scaffold_3 . exon 736699 736893 . + . ID=Phyra73452.1;Parent=Phyra73452;constitutive=1;rank=1 scaffold_3 . CDS 736955 737425 . + 0 ID=Phyra73452;Parent=Phyra73452;rank=2 scaffold_3 . exon 736955 737425 . + . ID=Phyra73452.2;Parent=Phyra73452;constitutive=1;rank=2 scaffold_3 . biological_region 744067 744068 0.999 + . logic_name=eponine scaffold_3 . biological_region 745220 745224 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 737481 740628 . - . ID=Phyra73453;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000210;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 737481 740628 . - . ID=Phyra73453;Parent=Phyra73453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 737481 740339 . - 0 ID=Phyra73453;Parent=Phyra73453;rank=2 scaffold_3 . exon 737481 740339 . - . ID=Phyra73453.2;Parent=Phyra73453;constitutive=1;rank=2 scaffold_3 . CDS 740473 740628 . - 0 ID=Phyra73453;Parent=Phyra73453;rank=1 scaffold_3 . exon 740473 740628 . - . ID=Phyra73453.1;Parent=Phyra73453;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 741166 743049 . + . ID=Phyra73454;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000211;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 741166 743049 . + . ID=Phyra73454;Parent=Phyra73454;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 741166 743049 . + 0 ID=Phyra73454;Parent=Phyra73454;rank=1 scaffold_3 . exon 741166 743049 . + . ID=Phyra73454.1;Parent=Phyra73454;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 744022 748020 . + . ID=Phyra73455;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000212;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 744022 748020 . + . ID=Phyra73455;Parent=Phyra73455;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 744022 748020 . + 0 ID=Phyra73455;Parent=Phyra73455;rank=1 scaffold_3 . exon 744022 748020 . + . ID=Phyra73455.1;Parent=Phyra73455;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 748807 752925 . + . ID=Phyra73456;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000213;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 748807 752925 . + . ID=Phyra73456;Parent=Phyra73456;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 748807 752925 . + 0 ID=Phyra73456;Parent=Phyra73456;rank=1 scaffold_3 . exon 748807 752925 . + . ID=Phyra73456.1;Parent=Phyra73456;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 756525 757610 . + . ID=Phyra73458;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000215;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 756525 757610 . + . ID=Phyra73458;Parent=Phyra73458;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 756525 757610 . + 0 ID=Phyra73458;Parent=Phyra73458;rank=1 scaffold_3 . exon 756525 757610 . + . ID=Phyra73458.1;Parent=Phyra73458;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 753394 754453 . - . ID=Phyra93616;biotype=protein_coding;external_name=C_scaffold_3000055;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 753394 754453 . - . ID=Phyra93616;Parent=Phyra93616;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 753394 753419 . - 0 ID=Phyra93616;Parent=Phyra93616;rank=5 scaffold_3 . exon 753394 753419 . - . ID=Phyra93616.5;Parent=Phyra93616;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 753500 753690 . - 0 ID=Phyra93616;Parent=Phyra93616;rank=4 scaffold_3 . exon 753500 753690 . - . ID=Phyra93616.4;Parent=Phyra93616;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 753759 753913 . - 0 ID=Phyra93616;Parent=Phyra93616;rank=3 scaffold_3 . exon 753759 753913 . - . ID=Phyra93616.3;Parent=Phyra93616;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_3 . CDS 753983 754186 . - 0 ID=Phyra93616;Parent=Phyra93616;rank=2 scaffold_3 . exon 753983 754186 . - . ID=Phyra93616.2;Parent=Phyra93616;constitutive=1;rank=2 scaffold_3 . CDS 754259 754453 . - 0 ID=Phyra93616;Parent=Phyra93616;rank=1 scaffold_3 . exon 754259 754453 . - . ID=Phyra93616.1;Parent=Phyra93616;constitutive=1;rank=1 scaffold_3 . biological_region 757093 757100 0.999 + . logic_name=eponine scaffold_3 . biological_region 757201 757207 0.999 + . logic_name=eponine scaffold_3 . biological_region 757254 757257 0.999 - . logic_name=eponine scaffold_3 . biological_region 757422 757425 0.999 - . logic_name=eponine scaffold_3 . biological_region 757478 757480 0.999 + . logic_name=eponine scaffold_3 . biological_region 757497 757502 0.999 - . logic_name=eponine scaffold_3 . biological_region 757570 757574 0.999 + . logic_name=eponine scaffold_3 . biological_region 757601 757607 0.999 - . logic_name=eponine scaffold_3 . biological_region 757720 757725 0.999 - . logic_name=eponine scaffold_3 . biological_region 758842 758844 0.999 + . logic_name=eponine scaffold_3 . biological_region 759075 759077 0.999 - . logic_name=eponine scaffold_3 . biological_region 759591 759594 0.999 + . logic_name=eponine scaffold_3 . biological_region 765882 765886 0.999 + . logic_name=eponine scaffold_3 . biological_region 766149 766152 0.999 + . logic_name=eponine scaffold_3 . biological_region 766437 766438 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 764880 765425 . - . ID=Phyra46868;biotype=protein_coding;external_name=gwEuk.3.206.1;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 764880 765425 . - . ID=Phyra46868;Parent=Phyra46868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 764880 765024 . - 0 ID=Phyra46868;Parent=Phyra46868;rank=2 scaffold_3 . exon 764880 765024 . - . ID=Phyra46868.2;Parent=Phyra46868;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 765073 765425 . - 0 ID=Phyra46868;Parent=Phyra46868;rank=1 scaffold_3 . exon 765073 765425 . - . ID=Phyra46868.1;Parent=Phyra46868;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 758097 759120 . - . ID=Phyra73459;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000216;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 758097 759120 . - . ID=Phyra73459;Parent=Phyra73459;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 758097 758338 . - 0 ID=Phyra73459;Parent=Phyra73459;rank=4 scaffold_3 . exon 758097 758338 . - . ID=Phyra73459.4;Parent=Phyra73459;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 758410 758544 . - 0 ID=Phyra73459;Parent=Phyra73459;rank=3 scaffold_3 . exon 758410 758544 . - . ID=Phyra73459.3;Parent=Phyra73459;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 758623 758976 . - 0 ID=Phyra73459;Parent=Phyra73459;rank=2 scaffold_3 . exon 758623 758976 . - . ID=Phyra73459.2;Parent=Phyra73459;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 759066 759120 . - 0 ID=Phyra73459;Parent=Phyra73459;rank=1 scaffold_3 . exon 759066 759120 . - . ID=Phyra73459.1;Parent=Phyra73459;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 759996 761048 . + . ID=Phyra73460;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000217;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 759996 761048 . + . ID=Phyra73460;Parent=Phyra73460;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 759996 761048 . + 0 ID=Phyra73460;Parent=Phyra73460;rank=1 scaffold_3 . exon 759996 761048 . + . ID=Phyra73460.1;Parent=Phyra73460;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 761150 761518 . - . ID=Phyra73461;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000218;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 761150 761518 . - . ID=Phyra73461;Parent=Phyra73461;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 761150 761518 . - 0 ID=Phyra73461;Parent=Phyra73461;rank=1 scaffold_3 . exon 761150 761518 . - . ID=Phyra73461.1;Parent=Phyra73461;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 765787 766494 . - . ID=Phyra73462;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000219;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 765787 766494 . - . ID=Phyra73462;Parent=Phyra73462;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 765787 766494 . - 0 ID=Phyra73462;Parent=Phyra73462;rank=1 scaffold_3 . exon 765787 766494 . - . ID=Phyra73462.1;Parent=Phyra73462;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 769197 770605 . + . ID=Phyra73463;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000220;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 769197 770605 . + . ID=Phyra73463;Parent=Phyra73463;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 769197 769333 . + 0 ID=Phyra73463;Parent=Phyra73463;rank=1 scaffold_3 . exon 769197 769333 . + . ID=Phyra73463.1;Parent=Phyra73463;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 769407 770205 . + 0 ID=Phyra73463;Parent=Phyra73463;rank=2 scaffold_3 . exon 769407 770205 . + . ID=Phyra73463.2;Parent=Phyra73463;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 770283 770370 . + 0 ID=Phyra73463;Parent=Phyra73463;rank=3 scaffold_3 . exon 770283 770370 . + . ID=Phyra73463.3;Parent=Phyra73463;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 770475 770605 . + 0 ID=Phyra73463;Parent=Phyra73463;rank=4 scaffold_3 . exon 770475 770605 . + . ID=Phyra73463.4;Parent=Phyra73463;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 ensembl protein_coding_gene 770929 771892 . - . ID=Phyra73464;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000221;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 770929 771892 . - . ID=Phyra73464;Parent=Phyra73464;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 770929 771504 . - 0 ID=Phyra73464;Parent=Phyra73464;rank=2 scaffold_3 . exon 770929 771504 . - . ID=Phyra73464.2;Parent=Phyra73464;constitutive=1;rank=2 scaffold_3 . CDS 771581 771892 . - 0 ID=Phyra73464;Parent=Phyra73464;rank=1 scaffold_3 . exon 771581 771892 . - . ID=Phyra73464.1;Parent=Phyra73464;constitutive=1;rank=1 scaffold_3 . biological_region 787701 787702 0.999 + . logic_name=eponine scaffold_3 . biological_region 787712 787719 0.999 + . logic_name=eponine scaffold_3 . repeat_region 787729 787739 . ? . description=dust scaffold_3 . biological_region 787821 787823 0.999 + . logic_name=eponine scaffold_3 . biological_region 787823 787823 0.999 - . logic_name=eponine scaffold_3 . biological_region 787832 787838 0.999 - . logic_name=eponine scaffold_3 . biological_region 788132 788133 0.999 + . logic_name=eponine scaffold_3 . repeat_region 791290 791297 . ? . description=dust scaffold_3 . biological_region 791689 791693 0.999 + . logic_name=eponine scaffold_3 . biological_region 791705 791707 0.999 + . logic_name=eponine scaffold_3 . biological_region 791916 791919 0.999 - . logic_name=eponine scaffold_3 . repeat_region 792274 792313 . ? . description=trf scaffold_3 . biological_region 792438 792444 0.999 - . logic_name=eponine scaffold_3 . biological_region 792463 792470 0.999 - . logic_name=eponine scaffold_3 . biological_region 792493 792500 0.999 + . logic_name=eponine scaffold_3 . biological_region 792574 792576 0.999 - . logic_name=eponine scaffold_3 . biological_region 793005 793008 0.999 - . logic_name=eponine scaffold_3 . biological_region 793168 793169 0.999 - . logic_name=eponine scaffold_3 . biological_region 793526 793527 0.999 + . logic_name=eponine scaffold_3 . biological_region 793570 793574 0.999 + . logic_name=eponine scaffold_3 . biological_region 793577 793581 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 791134 791922 . + . ID=Phyra71111;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000020;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 791134 791922 . + . ID=Phyra71111;Parent=Phyra71111;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 791134 791176 . + 0 ID=Phyra71111;Parent=Phyra71111;rank=1 scaffold_3 . exon 791134 791176 . + . ID=Phyra71111.1;Parent=Phyra71111;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 791332 791451 . + 0 ID=Phyra71111;Parent=Phyra71111;rank=2 scaffold_3 . exon 791332 791451 . + . ID=Phyra71111.2;Parent=Phyra71111;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 791510 791922 . + 0 ID=Phyra71111;Parent=Phyra71111;rank=3 scaffold_3 . exon 791510 791922 . + . ID=Phyra71111.3;Parent=Phyra71111;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 ensembl protein_coding_gene 787446 789411 . + . ID=Phyra73465;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000222;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 787446 789411 . + . ID=Phyra73465;Parent=Phyra73465;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 787446 787504 . + 0 ID=Phyra73465;Parent=Phyra73465;rank=1 scaffold_3 . exon 787446 787504 . + . ID=Phyra73465.1;Parent=Phyra73465;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 787901 788399 . + 0 ID=Phyra73465;Parent=Phyra73465;rank=2 scaffold_3 . exon 787901 788399 . + . ID=Phyra73465.2;Parent=Phyra73465;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 788466 788564 . + 0 ID=Phyra73465;Parent=Phyra73465;rank=3 scaffold_3 . exon 788466 788564 . + . ID=Phyra73465.3;Parent=Phyra73465;constitutive=1;rank=3 scaffold_3 . CDS 788638 788859 . + 0 ID=Phyra73465;Parent=Phyra73465;rank=4 scaffold_3 . exon 788638 788859 . + . ID=Phyra73465.4;Parent=Phyra73465;constitutive=1;rank=4 scaffold_3 . CDS 788936 789043 . + 0 ID=Phyra73465;Parent=Phyra73465;rank=5 scaffold_3 . exon 788936 789043 . + . ID=Phyra73465.5;Parent=Phyra73465;constitutive=1;rank=5 scaffold_3 . CDS 789085 789411 . + 0 ID=Phyra73465;Parent=Phyra73465;rank=6 scaffold_3 . exon 789085 789411 . + . ID=Phyra73465.6;Parent=Phyra73465;constitutive=1;rank=6 scaffold_3 ensembl protein_coding_gene 790080 790880 . - . ID=Phyra73466;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000223;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 790080 790880 . - . ID=Phyra73466;Parent=Phyra73466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 790080 790880 . - 0 ID=Phyra73466;Parent=Phyra73466;rank=1 scaffold_3 . exon 790080 790880 . - . ID=Phyra73466.1;Parent=Phyra73466;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 792358 793765 . + . ID=Phyra73468;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000225;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 792358 793765 . + . ID=Phyra73468;Parent=Phyra73468;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 792358 792670 . + 0 ID=Phyra73468;Parent=Phyra73468;rank=1 scaffold_3 . exon 792358 792670 . + . ID=Phyra73468.1;Parent=Phyra73468;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 792747 793765 . + 0 ID=Phyra73468;Parent=Phyra73468;rank=2 scaffold_3 . exon 792747 793765 . + . ID=Phyra73468.2;Parent=Phyra73468;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 794696 795145 . - . ID=Phyra73469;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000226;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 794696 795145 . - . ID=Phyra73469;Parent=Phyra73469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 794696 795145 . - 0 ID=Phyra73469;Parent=Phyra73469;rank=1 scaffold_3 . exon 794696 795145 . - . ID=Phyra73469.1;Parent=Phyra73469;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 796569 797027 . + . ID=Phyra73470;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000227;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 796569 797027 . + . ID=Phyra73470;Parent=Phyra73470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 796569 797027 . + 0 ID=Phyra73470;Parent=Phyra73470;rank=1 scaffold_3 . exon 796569 797027 . + . ID=Phyra73470.1;Parent=Phyra73470;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 797355 799138 . + . ID=Phyra73471;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000228;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 797355 799138 . + . ID=Phyra73471;Parent=Phyra73471;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 797355 798663 . + 0 ID=Phyra73471;Parent=Phyra73471;rank=1 scaffold_3 . exon 797355 798663 . + . ID=Phyra73471.1;Parent=Phyra73471;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 798734 799015 . + 0 ID=Phyra73471;Parent=Phyra73471;rank=2 scaffold_3 . exon 798734 799015 . + . ID=Phyra73471.2;Parent=Phyra73471;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 799083 799138 . + 0 ID=Phyra73471;Parent=Phyra73471;rank=3 scaffold_3 . exon 799083 799138 . + . ID=Phyra73471.3;Parent=Phyra73471;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 ensembl protein_coding_gene 800946 801905 . - . ID=Phyra73472;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000229;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 800946 801905 . - . ID=Phyra73472;Parent=Phyra73472;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 800946 801905 . - 0 ID=Phyra73472;Parent=Phyra73472;rank=1 scaffold_3 . exon 800946 801905 . - . ID=Phyra73472.1;Parent=Phyra73472;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 802429 804607 . + . ID=Phyra73473;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000230;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 802429 804607 . + . ID=Phyra73473;Parent=Phyra73473;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 802429 803601 . + 0 ID=Phyra73473;Parent=Phyra73473;rank=1 scaffold_3 . exon 802429 803601 . + . ID=Phyra73473.1;Parent=Phyra73473;constitutive=1;rank=1 scaffold_3 . CDS 803681 803732 . + 0 ID=Phyra73473;Parent=Phyra73473;rank=2 scaffold_3 . exon 803681 803732 . + . ID=Phyra73473.2;Parent=Phyra73473;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 803877 804607 . + 0 ID=Phyra73473;Parent=Phyra73473;rank=3 scaffold_3 . exon 803877 804607 . + . ID=Phyra73473.3;Parent=Phyra73473;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 ensembl protein_coding_gene 804720 809996 . - . ID=Phyra73474;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000231;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 804720 809996 . - . ID=Phyra73474;Parent=Phyra73474;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 804720 806963 . - 0 ID=Phyra73474;Parent=Phyra73474;rank=6 scaffold_3 . exon 804720 806963 . - . ID=Phyra73474.6;Parent=Phyra73474;constitutive=1;rank=6 scaffold_3 . CDS 807048 807361 . - 0 ID=Phyra73474;Parent=Phyra73474;rank=5 scaffold_3 . CDS 807906 808096 . - 0 ID=Phyra73474;Parent=Phyra73474;rank=4 scaffold_3 . CDS 808186 808367 . - 0 ID=Phyra73474;Parent=Phyra73474;rank=3 scaffold_3 . CDS 808463 808833 . - 0 ID=Phyra73474;Parent=Phyra73474;rank=2 scaffold_3 . CDS 809351 809996 . - 0 ID=Phyra73474;Parent=Phyra73474;rank=1 scaffold_3 . biological_region 807470 807472 0.999 + . logic_name=eponine scaffold_3 . repeat_region 812577 812615 . ? . description=dust scaffold_3 . biological_region 813400 813400 0.999 - . logic_name=eponine scaffold_3 . biological_region 814472 814476 0.999 + . logic_name=eponine scaffold_3 . biological_region 816395 816395 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 813129 814091 . + . ID=Phyra46877;biotype=protein_coding;external_name=gwEuk.3.215.1;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 813129 814091 . + . ID=Phyra46877;Parent=Phyra46877;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 813129 814091 . + 0 ID=Phyra46877;Parent=Phyra46877;rank=1 scaffold_3 . exon 813129 814091 . + . ID=Phyra46877.1;Parent=Phyra46877;constitutive=1;rank=1 scaffold_3 . exon 807048 807361 . - . ID=Phyra73474.5;Parent=Phyra73474;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . exon 807906 808096 . - . ID=Phyra73474.4;Parent=Phyra73474;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_3 . exon 808186 808367 . - . ID=Phyra73474.3;Parent=Phyra73474;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_3 . exon 808463 808833 . - . ID=Phyra73474.2;Parent=Phyra73474;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . exon 809351 809996 . - . ID=Phyra73474.1;Parent=Phyra73474;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 814314 816181 . + . ID=Phyra73477;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000234;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 814314 816181 . + . ID=Phyra73477;Parent=Phyra73477;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 814314 816032 . + 0 ID=Phyra73477;Parent=Phyra73477;rank=1 scaffold_3 . exon 814314 816032 . + . ID=Phyra73477.1;Parent=Phyra73477;constitutive=1;rank=1 scaffold_3 . CDS 816164 816181 . + 0 ID=Phyra73477;Parent=Phyra73477;rank=2 scaffold_3 . exon 816164 816181 . + . ID=Phyra73477.2;Parent=Phyra73477;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 820035 821271 . - . ID=Phyra73478;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000235;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 820035 821271 . - . ID=Phyra73478;Parent=Phyra73478;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 820035 820055 . - 0 ID=Phyra73478;Parent=Phyra73478;rank=3 scaffold_3 . exon 820035 820055 . - . ID=Phyra73478.3;Parent=Phyra73478;constitutive=1;rank=3 scaffold_3 . CDS 820098 820179 . - 0 ID=Phyra73478;Parent=Phyra73478;rank=2 scaffold_3 . exon 820098 820179 . - . ID=Phyra73478.2;Parent=Phyra73478;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 820280 821271 . - 0 ID=Phyra73478;Parent=Phyra73478;rank=1 scaffold_3 . exon 820280 821271 . - . ID=Phyra73478.1;Parent=Phyra73478;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 821955 822819 . + . ID=Phyra93619;biotype=protein_coding;external_name=C_scaffold_3000058;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 821955 822819 . + . ID=Phyra93619;Parent=Phyra93619;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 821955 822094 . + 0 ID=Phyra93619;Parent=Phyra93619;rank=1 scaffold_3 . exon 821955 822094 . + . ID=Phyra93619.1;Parent=Phyra93619;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 822161 822701 . + 0 ID=Phyra93619;Parent=Phyra93619;rank=2 scaffold_3 . exon 822161 822701 . + . ID=Phyra93619.2;Parent=Phyra93619;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 822766 822819 . + 0 ID=Phyra93619;Parent=Phyra93619;rank=3 scaffold_3 . exon 822766 822819 . + . ID=Phyra93619.3;Parent=Phyra93619;constitutive=1;rank=3 scaffold_3 . biological_region 829271 829271 0.999 + . logic_name=eponine scaffold_3 . biological_region 829308 829312 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 828405 829478 . + . ID=Phyra73480;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000237;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 828405 829478 . + . ID=Phyra73480;Parent=Phyra73480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 828405 829478 . + 0 ID=Phyra73480;Parent=Phyra73480;rank=1 scaffold_3 . exon 828405 829478 . + . ID=Phyra73480.1;Parent=Phyra73480;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 833942 834481 . - . ID=Phyra73482;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000239;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 833942 834481 . - . ID=Phyra73482;Parent=Phyra73482;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 833942 834481 . - 0 ID=Phyra73482;Parent=Phyra73482;rank=1 scaffold_3 . exon 833942 834481 . - . ID=Phyra73482.1;Parent=Phyra73482;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 829840 831764 . - . ID=Phyra93621;biotype=protein_coding;external_name=C_scaffold_3000060;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 829840 831764 . - . ID=Phyra93621;Parent=Phyra93621;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 829840 829904 . - 0 ID=Phyra93621;Parent=Phyra93621;rank=6 scaffold_3 . exon 829840 829904 . - . ID=Phyra93621.6;Parent=Phyra93621;constitutive=1;ensembl_phase=1;rank=6 scaffold_3 . CDS 829972 830042 . - 0 ID=Phyra93621;Parent=Phyra93621;rank=5 scaffold_3 . exon 829972 830042 . - . ID=Phyra93621.5;Parent=Phyra93621;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_3 . CDS 830120 830236 . - 0 ID=Phyra93621;Parent=Phyra93621;rank=4 scaffold_3 . exon 830120 830236 . - . ID=Phyra93621.4;Parent=Phyra93621;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_3 . CDS 830699 831262 . - 0 ID=Phyra93621;Parent=Phyra93621;rank=3 scaffold_3 . exon 830699 831262 . - . ID=Phyra93621.3;Parent=Phyra93621;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_3 . CDS 831332 831456 . - 0 ID=Phyra93621;Parent=Phyra93621;rank=2 scaffold_3 . exon 831332 831456 . - . ID=Phyra93621.2;Parent=Phyra93621;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 831531 831764 . - 0 ID=Phyra93621;Parent=Phyra93621;rank=1 scaffold_3 . exon 831531 831764 . - . ID=Phyra93621.1;Parent=Phyra93621;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 836627 838726 . - . ID=Phyra93622;biotype=protein_coding;external_name=C_scaffold_3000061;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 836627 838726 . - . ID=Phyra93622;Parent=Phyra93622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 836627 838510 . - 0 ID=Phyra93622;Parent=Phyra93622;rank=2 scaffold_3 . exon 836627 838510 . - . ID=Phyra93622.2;Parent=Phyra93622;constitutive=1;rank=2 scaffold_3 . CDS 838565 838726 . - 0 ID=Phyra93622;Parent=Phyra93622;rank=1 scaffold_3 . repeat_region 837586 837593 . ? . description=dust scaffold_3 . repeat_region 838776 838789 . ? . description=dust scaffold_3 . repeat_region 839795 839804 . ? . description=dust scaffold_3 . repeat_region 841262 841326 . ? . description=trf scaffold_3 . repeat_region 841452 841497 . ? . description=trf scaffold_3 . repeat_region 845906 845948 . ? . description=trf scaffold_3 ensembl protein_coding_gene 843197 845812 . + . ID=Phyra71113;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_3000022;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 843197 845812 . + . ID=Phyra71113;Parent=Phyra71113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 843197 845812 . + 0 ID=Phyra71113;Parent=Phyra71113;rank=1 scaffold_3 . exon 843197 845812 . + . ID=Phyra71113.1;Parent=Phyra71113;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 841786 843085 . + . ID=Phyra73484;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000241;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 841786 843085 . + . ID=Phyra73484;Parent=Phyra73484;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 841786 842277 . + 0 ID=Phyra73484;Parent=Phyra73484;rank=1 scaffold_3 . exon 841786 842277 . + . ID=Phyra73484.1;Parent=Phyra73484;constitutive=1;rank=1 scaffold_3 . CDS 842335 843085 . + 0 ID=Phyra73484;Parent=Phyra73484;rank=2 scaffold_3 . exon 842335 843085 . + . ID=Phyra73484.2;Parent=Phyra73484;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . exon 838565 838726 . - . ID=Phyra93622.1;Parent=Phyra93622;constitutive=1;rank=1 scaffold_3 . biological_region 848085 848088 0.999 + . logic_name=eponine scaffold_3 . biological_region 848745 848751 0.999 + . logic_name=eponine scaffold_3 . biological_region 848783 848783 0.999 + . logic_name=eponine scaffold_3 . biological_region 848804 848807 0.999 + . logic_name=eponine scaffold_3 . biological_region 848835 848840 0.999 + . logic_name=eponine scaffold_3 . biological_region 848889 848889 0.999 - . logic_name=eponine scaffold_3 . biological_region 849127 849130 0.999 + . logic_name=eponine scaffold_3 . biological_region 855411 855414 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 847026 848920 . + . ID=Phyra73486;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000243;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 847026 848920 . + . ID=Phyra73486;Parent=Phyra73486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 847026 847231 . + 0 ID=Phyra73486;Parent=Phyra73486;rank=1 scaffold_3 . exon 847026 847231 . + . ID=Phyra73486.1;Parent=Phyra73486;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 847320 847538 . + 0 ID=Phyra73486;Parent=Phyra73486;rank=2 scaffold_3 . exon 847320 847538 . + . ID=Phyra73486.2;Parent=Phyra73486;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_3 . CDS 847559 847661 . + 0 ID=Phyra73486;Parent=Phyra73486;rank=3 scaffold_3 . exon 847559 847661 . + . ID=Phyra73486.3;Parent=Phyra73486;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 847728 848183 . + 0 ID=Phyra73486;Parent=Phyra73486;rank=4 scaffold_3 . exon 847728 848183 . + . ID=Phyra73486.4;Parent=Phyra73486;constitutive=1;rank=4 scaffold_3 . CDS 848246 848920 . + 0 ID=Phyra73486;Parent=Phyra73486;rank=5 scaffold_3 . exon 848246 848920 . + . ID=Phyra73486.5;Parent=Phyra73486;constitutive=1;rank=5 scaffold_3 . repeat_region 857812 857819 . ? . description=dust scaffold_3 . repeat_region 861038 861067 . ? . description=trf scaffold_3 . repeat_region 865657 865664 . ? . description=dust scaffold_3 ensembl protein_coding_gene 858929 859636 . + . ID=Phyra73487;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000244;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 858929 859636 . + . ID=Phyra73487;Parent=Phyra73487;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 858929 859636 . + 0 ID=Phyra73487;Parent=Phyra73487;rank=1 scaffold_3 . exon 858929 859636 . + . ID=Phyra73487.1;Parent=Phyra73487;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 861281 864201 . + . ID=Phyra73488;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000245;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 861281 864201 . + . ID=Phyra73488;Parent=Phyra73488;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 861281 861327 . + 0 ID=Phyra73488;Parent=Phyra73488;rank=1 scaffold_3 . exon 861281 861327 . + . ID=Phyra73488.1;Parent=Phyra73488;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 861378 861490 . + 0 ID=Phyra73488;Parent=Phyra73488;rank=2 scaffold_3 . exon 861378 861490 . + . ID=Phyra73488.2;Parent=Phyra73488;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 861641 861847 . + 0 ID=Phyra73488;Parent=Phyra73488;rank=3 scaffold_3 . exon 861641 861847 . + . ID=Phyra73488.3;Parent=Phyra73488;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 861886 862277 . + 0 ID=Phyra73488;Parent=Phyra73488;rank=4 scaffold_3 . exon 861886 862277 . + . ID=Phyra73488.4;Parent=Phyra73488;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 862516 862962 . + 0 ID=Phyra73488;Parent=Phyra73488;rank=5 scaffold_3 . exon 862516 862962 . + . ID=Phyra73488.5;Parent=Phyra73488;constitutive=1;rank=5 scaffold_3 . CDS 863002 863401 . + 0 ID=Phyra73488;Parent=Phyra73488;rank=6 scaffold_3 . exon 863002 863401 . + . ID=Phyra73488.6;Parent=Phyra73488;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_3 . CDS 863845 864077 . + 0 ID=Phyra73488;Parent=Phyra73488;rank=7 scaffold_3 . exon 863845 864077 . + . ID=Phyra73488.7;Parent=Phyra73488;constitutive=1;ensembl_phase=1;rank=7 scaffold_3 . CDS 864100 864201 . + 0 ID=Phyra73488;Parent=Phyra73488;rank=8 scaffold_3 . exon 864100 864201 . + . ID=Phyra73488.8;Parent=Phyra73488;constitutive=1;rank=8 scaffold_3 . biological_region 870694 870697 0.999 + . logic_name=eponine scaffold_3 ensembl pseudogene 867727 868105 . - . ID=Phyra46887;biotype=pseudogene;external_name=gwEuk.3.225.1;logic_name=jgi_phyra1 scaffold_3 ensembl pseudogene 867727 868105 . - . ID=Phyra46887;Parent=Phyra46887;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_3 . exon 867727 868105 . - . ID=Phyra46887.1;Parent=Phyra46887;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 871913 872375 . - . ID=Phyra73490;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000247;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 871913 872375 . - . ID=Phyra73490;Parent=Phyra73490;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 871913 872086 . - 0 ID=Phyra73490;Parent=Phyra73490;rank=3 scaffold_3 . exon 871913 872086 . - . ID=Phyra73490.3;Parent=Phyra73490;constitutive=1;rank=3 scaffold_3 . CDS 872126 872234 . - 0 ID=Phyra73490;Parent=Phyra73490;rank=2 scaffold_3 . exon 872126 872234 . - . ID=Phyra73490.2;Parent=Phyra73490;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 872311 872375 . - 0 ID=Phyra73490;Parent=Phyra73490;rank=1 scaffold_3 . exon 872311 872375 . - . ID=Phyra73490.1;Parent=Phyra73490;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 872968 873765 . + . ID=Phyra73491;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000248;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 872968 873765 . + . ID=Phyra73491;Parent=Phyra73491;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 872968 873765 . + 0 ID=Phyra73491;Parent=Phyra73491;rank=1 scaffold_3 . exon 872968 873765 . + . ID=Phyra73491.1;Parent=Phyra73491;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 869641 871660 . - . ID=Phyra93623;biotype=protein_coding;external_name=C_scaffold_3000062;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 869641 871660 . - . ID=Phyra93623;Parent=Phyra93623;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 869641 869977 . - 0 ID=Phyra93623;Parent=Phyra93623;rank=3 scaffold_3 . exon 869641 869977 . - . ID=Phyra93623.3;Parent=Phyra93623;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 869999 871478 . - 0 ID=Phyra93623;Parent=Phyra93623;rank=2 scaffold_3 . exon 869999 871478 . - . ID=Phyra93623.2;Parent=Phyra93623;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 871527 871660 . - 0 ID=Phyra93623;Parent=Phyra93623;rank=1 scaffold_3 . exon 871527 871660 . - . ID=Phyra93623.1;Parent=Phyra93623;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . repeat_region 877846 877865 . ? . description=trf scaffold_3 . repeat_region 885117 885124 . ? . description=dust scaffold_3 ensembl protein_coding_gene 880043 882112 . - . ID=Phyra73492;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000249;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 880043 882112 . - . ID=Phyra73492;Parent=Phyra73492;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 880043 882112 . - 0 ID=Phyra73492;Parent=Phyra73492;rank=1 scaffold_3 . exon 880043 882112 . - . ID=Phyra73492.1;Parent=Phyra73492;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 882907 885051 . + . ID=Phyra73493;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000250;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 882907 885051 . + . ID=Phyra73493;Parent=Phyra73493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 882907 885051 . + 0 ID=Phyra73493;Parent=Phyra73493;rank=1 scaffold_3 . exon 882907 885051 . + . ID=Phyra73493.1;Parent=Phyra73493;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 885142 886086 . - . ID=Phyra73494;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000251;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 885142 886086 . - . ID=Phyra73494;Parent=Phyra73494;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 885142 886086 . - 0 ID=Phyra73494;Parent=Phyra73494;rank=1 scaffold_3 . exon 885142 886086 . - . ID=Phyra73494.1;Parent=Phyra73494;constitutive=1;rank=1 scaffold_3 . biological_region 886528 886531 0.999 + . logic_name=eponine scaffold_3 . biological_region 886983 886987 0.999 + . logic_name=eponine scaffold_3 . biological_region 887194 887198 0.999 + . logic_name=eponine scaffold_3 . biological_region 887683 887684 0.999 - . logic_name=eponine scaffold_3 . biological_region 888395 888398 0.999 + . logic_name=eponine scaffold_3 . biological_region 888457 888458 0.999 - . logic_name=eponine scaffold_3 . biological_region 888490 888493 0.999 - . logic_name=eponine scaffold_3 . biological_region 890000 890005 0.999 + . logic_name=eponine scaffold_3 . biological_region 891281 891285 0.999 - . logic_name=eponine scaffold_3 . biological_region 891772 891776 0.999 - . logic_name=eponine scaffold_3 . biological_region 891830 891833 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 887146 889185 . + . ID=Phyra73495;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000252;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 887146 889185 . + . ID=Phyra73495;Parent=Phyra73495;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 887146 889185 . + 0 ID=Phyra73495;Parent=Phyra73495;rank=1 scaffold_3 . exon 887146 889185 . + . ID=Phyra73495.1;Parent=Phyra73495;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 889517 891715 . - . ID=Phyra73496;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000253;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 889517 891715 . - . ID=Phyra73496;Parent=Phyra73496;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 889517 891715 . - 0 ID=Phyra73496;Parent=Phyra73496;rank=1 scaffold_3 . exon 889517 891715 . - . ID=Phyra73496.1;Parent=Phyra73496;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 893495 895912 . + . ID=Phyra73497;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000254;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 893495 895912 . + . ID=Phyra73497;Parent=Phyra73497;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 893495 895912 . + 0 ID=Phyra73497;Parent=Phyra73497;rank=1 scaffold_3 . exon 893495 895912 . + . ID=Phyra73497.1;Parent=Phyra73497;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 896034 897570 . - . ID=Phyra73498;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000255;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 896034 897570 . - . ID=Phyra73498;Parent=Phyra73498;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 896034 896810 . - 0 ID=Phyra73498;Parent=Phyra73498;rank=4 scaffold_3 . exon 896034 896810 . - . ID=Phyra73498.4;Parent=Phyra73498;constitutive=1;rank=4 scaffold_3 . CDS 896879 897009 . - 0 ID=Phyra73498;Parent=Phyra73498;rank=3 scaffold_3 . CDS 897074 897188 . - 0 ID=Phyra73498;Parent=Phyra73498;rank=2 scaffold_3 . CDS 897265 897570 . - 0 ID=Phyra73498;Parent=Phyra73498;rank=1 scaffold_3 . repeat_region 899423 899450 . ? . description=dust scaffold_3 ensembl protein_coding_gene 897805 898832 . + . ID=Phyra46892;biotype=protein_coding;external_name=gwEuk.3.230.1;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 897805 898832 . + . ID=Phyra46892;Parent=Phyra46892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 897805 897885 . + 0 ID=Phyra46892;Parent=Phyra46892;rank=1 scaffold_3 . exon 897805 897885 . + . ID=Phyra46892.1;Parent=Phyra46892;constitutive=1;rank=1 scaffold_3 . CDS 897958 898026 . + 0 ID=Phyra46892;Parent=Phyra46892;rank=2 scaffold_3 . exon 897958 898026 . + . ID=Phyra46892.2;Parent=Phyra46892;constitutive=1;rank=2 scaffold_3 . CDS 898095 898832 . + 0 ID=Phyra46892;Parent=Phyra46892;rank=3 scaffold_3 . exon 898095 898832 . + . ID=Phyra46892.3;Parent=Phyra46892;constitutive=1;rank=3 scaffold_3 . exon 896879 897009 . - . ID=Phyra73498.3;Parent=Phyra73498;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . exon 897074 897188 . - . ID=Phyra73498.2;Parent=Phyra73498;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . exon 897265 897570 . - . ID=Phyra73498.1;Parent=Phyra73498;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 899639 899953 . - . ID=Phyra73500;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000257;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 899639 899953 . - . ID=Phyra73500;Parent=Phyra73500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 899639 899953 . - 0 ID=Phyra73500;Parent=Phyra73500;rank=1 scaffold_3 . exon 899639 899953 . - . ID=Phyra73500.1;Parent=Phyra73500;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 902348 903310 . - . ID=Phyra73501;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000258;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 902348 903310 . - . ID=Phyra73501;Parent=Phyra73501;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 902348 903310 . - 0 ID=Phyra73501;Parent=Phyra73501;rank=1 scaffold_3 . exon 902348 903310 . - . ID=Phyra73501.1;Parent=Phyra73501;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 905531 907639 . - . ID=Phyra73502;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000259;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 905531 907639 . - . ID=Phyra73502;Parent=Phyra73502;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 905531 907639 . - 0 ID=Phyra73502;Parent=Phyra73502;rank=1 scaffold_3 . exon 905531 907639 . - . ID=Phyra73502.1;Parent=Phyra73502;constitutive=1;rank=1 scaffold_3 . biological_region 908332 908333 0.999 + . logic_name=eponine scaffold_3 . biological_region 912644 912649 0.999 + . logic_name=eponine scaffold_3 . biological_region 912670 912670 0.999 - . logic_name=eponine scaffold_3 . biological_region 912724 912727 0.999 - . logic_name=eponine scaffold_3 . biological_region 915855 915856 0.999 + . logic_name=eponine scaffold_3 . biological_region 915913 915919 0.999 - . logic_name=eponine scaffold_3 . biological_region 915952 915953 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 907949 909125 . - . ID=Phyra73503;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000260;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 907949 909125 . - . ID=Phyra73503;Parent=Phyra73503;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 907949 908006 . - 0 ID=Phyra73503;Parent=Phyra73503;rank=3 scaffold_3 . exon 907949 908006 . - . ID=Phyra73503.3;Parent=Phyra73503;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 908143 908536 . - 0 ID=Phyra73503;Parent=Phyra73503;rank=2 scaffold_3 . exon 908143 908536 . - . ID=Phyra73503.2;Parent=Phyra73503;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_3 . CDS 908657 909125 . - 0 ID=Phyra73503;Parent=Phyra73503;rank=1 scaffold_3 . exon 908657 909125 . - . ID=Phyra73503.1;Parent=Phyra73503;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 909538 910743 . + . ID=Phyra73504;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000261;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 909538 910743 . + . ID=Phyra73504;Parent=Phyra73504;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 909538 910134 . + 0 ID=Phyra73504;Parent=Phyra73504;rank=1 scaffold_3 . exon 909538 910134 . + . ID=Phyra73504.1;Parent=Phyra73504;constitutive=1;rank=1 scaffold_3 . CDS 910214 910537 . + 0 ID=Phyra73504;Parent=Phyra73504;rank=2 scaffold_3 . exon 910214 910537 . + . ID=Phyra73504.2;Parent=Phyra73504;constitutive=1;rank=2 scaffold_3 . CDS 910593 910673 . + 0 ID=Phyra73504;Parent=Phyra73504;rank=3 scaffold_3 . exon 910593 910673 . + . ID=Phyra73504.3;Parent=Phyra73504;constitutive=1;rank=3 scaffold_3 . CDS 910708 910743 . + 0 ID=Phyra73504;Parent=Phyra73504;rank=4 scaffold_3 . exon 910708 910743 . + . ID=Phyra73504.4;Parent=Phyra73504;constitutive=1;rank=4 scaffold_3 ensembl protein_coding_gene 910999 911890 . - . ID=Phyra73505;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000262;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 910999 911890 . - . ID=Phyra73505;Parent=Phyra73505;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 910999 911427 . - 0 ID=Phyra73505;Parent=Phyra73505;rank=3 scaffold_3 . exon 910999 911427 . - . ID=Phyra73505.3;Parent=Phyra73505;constitutive=1;rank=3 scaffold_3 . CDS 911485 911578 . - 0 ID=Phyra73505;Parent=Phyra73505;rank=2 scaffold_3 . exon 911485 911578 . - . ID=Phyra73505.2;Parent=Phyra73505;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 911649 911890 . - 0 ID=Phyra73505;Parent=Phyra73505;rank=1 scaffold_3 . exon 911649 911890 . - . ID=Phyra73505.1;Parent=Phyra73505;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 911990 913162 . + . ID=Phyra73506;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000263;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 911990 913162 . + . ID=Phyra73506;Parent=Phyra73506;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 911990 912098 . + 0 ID=Phyra73506;Parent=Phyra73506;rank=1 scaffold_3 . exon 911990 912098 . + . ID=Phyra73506.1;Parent=Phyra73506;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 912168 913162 . + 0 ID=Phyra73506;Parent=Phyra73506;rank=2 scaffold_3 . exon 912168 913162 . + . ID=Phyra73506.2;Parent=Phyra73506;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 913331 916196 . - . ID=Phyra73507;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000264;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 913331 916196 . - . ID=Phyra73507;Parent=Phyra73507;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 913331 913397 . - 0 ID=Phyra73507;Parent=Phyra73507;rank=3 scaffold_3 . exon 913331 913397 . - . ID=Phyra73507.3;Parent=Phyra73507;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 913467 915980 . - 0 ID=Phyra73507;Parent=Phyra73507;rank=2 scaffold_3 . exon 913467 915980 . - . ID=Phyra73507.2;Parent=Phyra73507;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_3 . CDS 916066 916196 . - 0 ID=Phyra73507;Parent=Phyra73507;rank=1 scaffold_3 . exon 916066 916196 . - . ID=Phyra73507.1;Parent=Phyra73507;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . repeat_region 921519 921548 . ? . description=trf scaffold_3 . repeat_region 924286 924320 . ? . description=trf scaffold_3 . repeat_region 924627 924680 . ? . description=trf scaffold_3 ensembl protein_coding_gene 919797 921834 . - . ID=Phyra73509;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000266;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 919797 921834 . - . ID=Phyra73509;Parent=Phyra73509;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 919797 919859 . - 0 ID=Phyra73509;Parent=Phyra73509;rank=7 scaffold_3 . exon 919797 919859 . - . ID=Phyra73509.7;Parent=Phyra73509;constitutive=1;rank=7 scaffold_3 . CDS 919944 920006 . - 0 ID=Phyra73509;Parent=Phyra73509;rank=6 scaffold_3 . exon 919944 920006 . - . ID=Phyra73509.6;Parent=Phyra73509;constitutive=1;rank=6 scaffold_3 . CDS 920097 920495 . - 0 ID=Phyra73509;Parent=Phyra73509;rank=5 scaffold_3 . exon 920097 920495 . - . ID=Phyra73509.5;Parent=Phyra73509;constitutive=1;rank=5 scaffold_3 . CDS 920572 921260 . - 0 ID=Phyra73509;Parent=Phyra73509;rank=4 scaffold_3 . exon 920572 921260 . - . ID=Phyra73509.4;Parent=Phyra73509;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 921334 921394 . - 0 ID=Phyra73509;Parent=Phyra73509;rank=3 scaffold_3 . exon 921334 921394 . - . ID=Phyra73509.3;Parent=Phyra73509;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 921467 921555 . - 0 ID=Phyra73509;Parent=Phyra73509;rank=2 scaffold_3 . exon 921467 921555 . - . ID=Phyra73509.2;Parent=Phyra73509;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 921636 921834 . - 0 ID=Phyra73509;Parent=Phyra73509;rank=1 scaffold_3 . exon 921636 921834 . - . ID=Phyra73509.1;Parent=Phyra73509;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 922015 923255 . + . ID=Phyra73510;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000267;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 922015 923255 . + . ID=Phyra73510;Parent=Phyra73510;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 922015 922500 . + 0 ID=Phyra73510;Parent=Phyra73510;rank=1 scaffold_3 . exon 922015 922500 . + . ID=Phyra73510.1;Parent=Phyra73510;constitutive=1;rank=1 scaffold_3 . CDS 922572 923255 . + 0 ID=Phyra73510;Parent=Phyra73510;rank=2 scaffold_3 . exon 922572 923255 . + . ID=Phyra73510.2;Parent=Phyra73510;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 923404 926585 . - . ID=Phyra73511;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000268;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 923404 926585 . - . ID=Phyra73511;Parent=Phyra73511;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 923404 923439 . - 0 ID=Phyra73511;Parent=Phyra73511;rank=8 scaffold_3 . exon 923404 923439 . - . ID=Phyra73511.8;Parent=Phyra73511;constitutive=1;rank=8 scaffold_3 . CDS 923480 924061 . - 0 ID=Phyra73511;Parent=Phyra73511;rank=7 scaffold_3 . exon 923480 924061 . - . ID=Phyra73511.7;Parent=Phyra73511;constitutive=1;rank=7 scaffold_3 . CDS 924138 924255 . - 0 ID=Phyra73511;Parent=Phyra73511;rank=6 scaffold_3 . exon 924138 924255 . - . ID=Phyra73511.6;Parent=Phyra73511;constitutive=1;ensembl_phase=2;rank=6 scaffold_3 . CDS 924302 924402 . - 0 ID=Phyra73511;Parent=Phyra73511;rank=5 scaffold_3 . exon 924302 924402 . - . ID=Phyra73511.5;Parent=Phyra73511;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_3 . CDS 924474 924570 . - 0 ID=Phyra73511;Parent=Phyra73511;rank=4 scaffold_3 . exon 924474 924570 . - . ID=Phyra73511.4;Parent=Phyra73511;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 924923 925735 . - 0 ID=Phyra73511;Parent=Phyra73511;rank=3 scaffold_3 . exon 924923 925735 . - . ID=Phyra73511.3;Parent=Phyra73511;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_3 . CDS 925829 926373 . - 0 ID=Phyra73511;Parent=Phyra73511;rank=2 scaffold_3 . exon 925829 926373 . - . ID=Phyra73511.2;Parent=Phyra73511;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 926448 926585 . - 0 ID=Phyra73511;Parent=Phyra73511;rank=1 scaffold_3 ensembl protein_coding_gene 916387 917692 . + . ID=Phyra93629;biotype=protein_coding;external_name=C_scaffold_3000068;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 916387 917692 . + . ID=Phyra93629;Parent=Phyra93629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 916387 916464 . + 0 ID=Phyra93629;Parent=Phyra93629;rank=1 scaffold_3 . exon 916387 916464 . + . ID=Phyra93629.1;Parent=Phyra93629;constitutive=1;rank=1 scaffold_3 . CDS 916498 916643 . + 0 ID=Phyra93629;Parent=Phyra93629;rank=2 scaffold_3 . exon 916498 916643 . + . ID=Phyra93629.2;Parent=Phyra93629;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 916721 916814 . + 0 ID=Phyra93629;Parent=Phyra93629;rank=3 scaffold_3 . exon 916721 916814 . + . ID=Phyra93629.3;Parent=Phyra93629;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 916903 917008 . + 0 ID=Phyra93629;Parent=Phyra93629;rank=4 scaffold_3 . exon 916903 917008 . + . ID=Phyra93629.4;Parent=Phyra93629;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_3 . CDS 917087 917346 . + 0 ID=Phyra93629;Parent=Phyra93629;rank=5 scaffold_3 . exon 917087 917346 . + . ID=Phyra93629.5;Parent=Phyra93629;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 917432 917515 . + 0 ID=Phyra93629;Parent=Phyra93629;rank=6 scaffold_3 . exon 917432 917515 . + . ID=Phyra93629.6;Parent=Phyra93629;constitutive=1;rank=6 scaffold_3 . CDS 917600 917692 . + 0 ID=Phyra93629;Parent=Phyra93629;rank=7 scaffold_3 . exon 917600 917692 . + . ID=Phyra93629.7;Parent=Phyra93629;constitutive=1;rank=7 scaffold_3 . biological_region 933732 933737 0.999 - . logic_name=eponine scaffold_3 . biological_region 935774 935775 0.999 - . logic_name=eponine scaffold_3 ensembl pseudogene 926721 928065 . + . ID=Phyra46899;biotype=pseudogene;external_name=gwEuk.3.237.1;logic_name=jgi_phyra1 scaffold_3 ensembl pseudogene 926721 928065 . + . ID=Phyra46899;Parent=Phyra46899;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_3 . exon 926721 926859 . + . ID=Phyra46899.1;Parent=Phyra46899;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . exon 926921 927073 . + . ID=Phyra46899.2;Parent=Phyra46899;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . exon 927145 927336 . + . ID=Phyra46899.3;Parent=Phyra46899;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_3 . exon 927980 928065 . + . ID=Phyra46899.4;Parent=Phyra46899;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 . exon 926448 926585 . - . ID=Phyra73511.1;Parent=Phyra73511;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 929535 933762 . - . ID=Phyra73512;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_3000269;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 929535 933762 . - . ID=Phyra73512;Parent=Phyra73512;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 929535 933452 . - 0 ID=Phyra73512;Parent=Phyra73512;rank=2 scaffold_3 . exon 929535 933452 . - . ID=Phyra73512.2;Parent=Phyra73512;constitutive=1;rank=2 scaffold_3 . CDS 933535 933762 . - 0 ID=Phyra73512;Parent=Phyra73512;rank=1 scaffold_3 . exon 933535 933762 . - . ID=Phyra73512.1;Parent=Phyra73512;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 934729 934984 . - . ID=Phyra93634;biotype=protein_coding;external_name=C_scaffold_3000073;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 934729 934984 . - . ID=Phyra93634;Parent=Phyra93634;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 934729 934882 . - 0 ID=Phyra93634;Parent=Phyra93634;rank=2 scaffold_3 . exon 934729 934882 . - . ID=Phyra93634.2;Parent=Phyra93634;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 934959 934984 . - 0 ID=Phyra93634;Parent=Phyra93634;rank=1 scaffold_3 . exon 934959 934984 . - . ID=Phyra93634.1;Parent=Phyra93634;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 935286 938612 . + . ID=Phyra93635;biotype=protein_coding;external_name=C_scaffold_3000074;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 935286 938612 . + . ID=Phyra93635;Parent=Phyra93635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 935286 935456 . + 0 ID=Phyra93635;Parent=Phyra93635;rank=1 scaffold_3 . exon 935286 935456 . + . ID=Phyra93635.1;Parent=Phyra93635;constitutive=1;rank=1 scaffold_3 . CDS 935550 935855 . + 0 ID=Phyra93635;Parent=Phyra93635;rank=2 scaffold_3 . exon 935550 935855 . + . ID=Phyra93635.2;Parent=Phyra93635;constitutive=1;rank=2 scaffold_3 . CDS 936427 936601 . + 0 ID=Phyra93635;Parent=Phyra93635;rank=3 scaffold_3 . CDS 936623 936684 . + 0 ID=Phyra93635;Parent=Phyra93635;rank=4 scaffold_3 . CDS 936712 938349 . + 0 ID=Phyra93635;Parent=Phyra93635;rank=5 scaffold_3 . CDS 938383 938401 . + 0 ID=Phyra93635;Parent=Phyra93635;rank=6 scaffold_3 . CDS 938473 938612 . + 0 ID=Phyra93635;Parent=Phyra93635;rank=7 scaffold_3 . repeat_region 940948 940955 . ? . description=dust scaffold_3 . repeat_region 945395 945456 . ? . description=dust scaffold_3 . repeat_region 945721 945759 . ? . description=trf scaffold_3 ensembl tRNA_gene 945300 945371 . + . ID=EPrPRAG00000000042;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_3 ensembl transcript 945300 945371 . + . ID=EPrPRAT00000000042;Parent=EPrPRAG00000000042;biotype=tRNA;logic_name=ncrna_eg scaffold_3 ensembl tRNA_gene 945480 945551 . + . ID=EPrPRAG00000000162;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_3 ensembl transcript 945480 945551 . + . ID=EPrPRAT00000000162;Parent=EPrPRAG00000000162;biotype=tRNA;logic_name=ncrna_eg scaffold_3 . exon 945300 945371 . + . ID=EPrPRAE00000000042;Parent=EPrPRAT00000000042;constitutive=1;rank=1 scaffold_3 . exon 945480 945551 . + . ID=EPrPRAE00000000162;Parent=EPrPRAT00000000162;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 940159 940521 . - . ID=Phyra46906;biotype=protein_coding;external_name=gwEuk.3.244.1;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 940159 940521 . - . ID=Phyra46906;Parent=Phyra46906;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 940159 940521 . - 0 ID=Phyra46906;Parent=Phyra46906;rank=1 scaffold_3 . exon 940159 940521 . - . ID=Phyra46906.1;Parent=Phyra46906;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 942093 943009 . - . ID=Phyra46911;biotype=protein_coding;external_name=gwEuk.3.249.1;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 942093 943009 . - . ID=Phyra46911;Parent=Phyra46911;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 942093 942283 . - 0 ID=Phyra46911;Parent=Phyra46911;rank=2 scaffold_3 . exon 942093 942283 . - . ID=Phyra46911.2;Parent=Phyra46911;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 942346 943009 . - 0 ID=Phyra46911;Parent=Phyra46911;rank=1 scaffold_3 . exon 942346 943009 . - . ID=Phyra46911.1;Parent=Phyra46911;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . exon 936427 936601 . + . ID=Phyra93635.3;Parent=Phyra93635;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . exon 936623 936684 . + . ID=Phyra93635.4;Parent=Phyra93635;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 . exon 936712 938349 . + . ID=Phyra93635.5;Parent=Phyra93635;constitutive=1;rank=5 scaffold_3 . exon 938383 938401 . + . ID=Phyra93635.6;Parent=Phyra93635;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_3 . exon 938473 938612 . + . ID=Phyra93635.7;Parent=Phyra93635;constitutive=1;ensembl_phase=1;rank=7 scaffold_3 ensembl protein_coding_gene 939326 939571 . - . ID=Phyra93636;biotype=protein_coding;external_name=C_scaffold_3000075;logic_name=jgi_phyra1 scaffold_3 ensembl transcript 939326 939571 . - . ID=Phyra93636;Parent=Phyra93636;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_3 . CDS 939326 939571 . - 0 ID=Phyra93636;Parent=Phyra93636;rank=1 scaffold_3 . exon 939326 939571 . - . ID=Phyra93636.1;Parent=Phyra93636;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_4 1 963095 scaffold_4 . repeat_region 1217 1235 . ? . description=dust scaffold_4 . repeat_region 2554 2571 . ? . description=dust scaffold_4 . repeat_region 3098 3116 . ? . description=dust scaffold_4 . repeat_region 5481 5579 . + . description=GypsyPi-1c_I-int scaffold_4 . biological_region 5777 5777 0.999 + . logic_name=eponine scaffold_4 . biological_region 5935 5938 0.999 + . logic_name=eponine scaffold_4 . biological_region 5969 5970 0.999 + . logic_name=eponine scaffold_4 . biological_region 5988 5990 0.999 - . logic_name=eponine scaffold_4 . biological_region 6063 6065 0.999 + . logic_name=eponine scaffold_4 . repeat_region 6375 6580 . ? . description=dust scaffold_4 . repeat_region 6589 7384 . + . description=GypsyPi-1c_I-int scaffold_4 . biological_region 8982 8987 0.999 + . logic_name=eponine scaffold_4 . repeat_region 8997 10180 . + . description=GypsyPi-1c_I-int scaffold_4 ensembl pseudogene 9000 9336 . + . ID=Phyra48528;biotype=pseudogene;external_name=gwEuk.4.167.1;logic_name=jgi_phyra1 scaffold_4 ensembl pseudogene 9000 9336 . + . ID=Phyra48528;Parent=Phyra48528;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_4 . exon 9000 9336 . + . ID=Phyra48528.1;Parent=Phyra48528;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 9847 10173 . + . ID=Phyra48529;biotype=protein_coding;external_name=gwEuk.4.168.1;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 9847 10173 . + . ID=Phyra48529;Parent=Phyra48529;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 9847 10173 . + 0 ID=Phyra48529;Parent=Phyra48529;rank=1 scaffold_4 . exon 9847 10173 . + . ID=Phyra48529.1;Parent=Phyra48529;constitutive=1;rank=1 scaffold_4 . repeat_region 11308 23888 . ? . description=dust scaffold_4 . repeat_region 24675 29468 . ? . description=dust scaffold_4 . repeat_region 29583 29665 . ? . description=trf scaffold_4 . biological_region 30043 30045 0.999 - . logic_name=eponine scaffold_4 . biological_region 30118 30120 0.999 + . logic_name=eponine scaffold_4 . biological_region 30138 30139 0.999 - . logic_name=eponine scaffold_4 . biological_region 30170 30173 0.999 - . logic_name=eponine scaffold_4 . biological_region 37516 37519 0.999 + . logic_name=eponine scaffold_4 . biological_region 38042 38045 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 37263 38270 . + . ID=Phyra73516;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000002;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 37263 38270 . + . ID=Phyra73516;Parent=Phyra73516;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 37263 38270 . + 0 ID=Phyra73516;Parent=Phyra73516;rank=1 scaffold_4 . exon 37263 38270 . + . ID=Phyra73516.1;Parent=Phyra73516;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 38606 39400 . + . ID=Phyra73517;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000003;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 38606 39400 . + . ID=Phyra73517;Parent=Phyra73517;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 38606 39400 . + 0 ID=Phyra73517;Parent=Phyra73517;rank=1 scaffold_4 . exon 38606 39400 . + . ID=Phyra73517.1;Parent=Phyra73517;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 39533 43509 . - . ID=Phyra73518;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000004;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 39533 43509 . - . ID=Phyra73518;Parent=Phyra73518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 39533 40181 . - 0 ID=Phyra73518;Parent=Phyra73518;rank=5 scaffold_4 . exon 39533 40181 . - . ID=Phyra73518.5;Parent=Phyra73518;constitutive=1;ensembl_phase=2;rank=5 scaffold_4 . CDS 40262 40539 . - 0 ID=Phyra73518;Parent=Phyra73518;rank=4 scaffold_4 . CDS 40758 41547 . - 0 ID=Phyra73518;Parent=Phyra73518;rank=3 scaffold_4 . CDS 41699 42506 . - 0 ID=Phyra73518;Parent=Phyra73518;rank=2 scaffold_4 . CDS 42765 43509 . - 0 ID=Phyra73518;Parent=Phyra73518;rank=1 scaffold_4 . exon 40262 40539 . - . ID=Phyra73518.4;Parent=Phyra73518;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_4 . exon 40758 41547 . - . ID=Phyra73518.3;Parent=Phyra73518;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . exon 41699 42506 . - . ID=Phyra73518.2;Parent=Phyra73518;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_4 . exon 42765 43509 . - . ID=Phyra73518.1;Parent=Phyra73518;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 43797 44606 . - . ID=Phyra73519;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000005;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 43797 44606 . - . ID=Phyra73519;Parent=Phyra73519;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 43797 44606 . - 0 ID=Phyra73519;Parent=Phyra73519;rank=1 scaffold_4 . exon 43797 44606 . - . ID=Phyra73519.1;Parent=Phyra73519;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 45360 46160 . - . ID=Phyra73520;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000006;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 45360 46160 . - . ID=Phyra73520;Parent=Phyra73520;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 45360 46160 . - 0 ID=Phyra73520;Parent=Phyra73520;rank=1 scaffold_4 . exon 45360 46160 . - . ID=Phyra73520.1;Parent=Phyra73520;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 46347 47174 . - . ID=Phyra73521;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000007;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 46347 47174 . - . ID=Phyra73521;Parent=Phyra73521;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 46347 47174 . - 0 ID=Phyra73521;Parent=Phyra73521;rank=1 scaffold_4 . exon 46347 47174 . - . ID=Phyra73521.1;Parent=Phyra73521;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 48040 48871 . - . ID=Phyra73522;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000008;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 48040 48871 . - . ID=Phyra73522;Parent=Phyra73522;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 48040 48637 . - 0 ID=Phyra73522;Parent=Phyra73522;rank=2 scaffold_4 . exon 48040 48637 . - . ID=Phyra73522.2;Parent=Phyra73522;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 48705 48871 . - 0 ID=Phyra73522;Parent=Phyra73522;rank=1 scaffold_4 . exon 48705 48871 . - . ID=Phyra73522.1;Parent=Phyra73522;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 49073 49948 . - . ID=Phyra73523;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000009;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 49073 49948 . - . ID=Phyra73523;Parent=Phyra73523;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 49073 49712 . - 0 ID=Phyra73523;Parent=Phyra73523;rank=2 scaffold_4 . exon 49073 49712 . - . ID=Phyra73523.2;Parent=Phyra73523;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 49782 49948 . - 0 ID=Phyra73523;Parent=Phyra73523;rank=1 scaffold_4 . biological_region 50839 50843 0.999 + . logic_name=eponine scaffold_4 . biological_region 53037 53039 0.999 + . logic_name=eponine scaffold_4 . biological_region 55885 55888 0.999 + . logic_name=eponine scaffold_4 . biological_region 55955 55958 0.999 - . logic_name=eponine scaffold_4 . biological_region 57544 57549 0.999 - . logic_name=eponine scaffold_4 . repeat_region 57683 57690 . ? . description=dust scaffold_4 . exon 49782 49948 . - . ID=Phyra73523.1;Parent=Phyra73523;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 50283 51188 . - . ID=Phyra73524;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000010;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 50283 51188 . - . ID=Phyra73524;Parent=Phyra73524;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 50283 50961 . - 0 ID=Phyra73524;Parent=Phyra73524;rank=2 scaffold_4 . exon 50283 50961 . - . ID=Phyra73524.2;Parent=Phyra73524;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 51028 51188 . - 0 ID=Phyra73524;Parent=Phyra73524;rank=1 scaffold_4 . exon 51028 51188 . - . ID=Phyra73524.1;Parent=Phyra73524;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 51951 52820 . - . ID=Phyra73525;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000011;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 51951 52820 . - . ID=Phyra73525;Parent=Phyra73525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 51951 52584 . - 0 ID=Phyra73525;Parent=Phyra73525;rank=2 scaffold_4 . exon 51951 52584 . - . ID=Phyra73525.2;Parent=Phyra73525;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 52660 52820 . - 0 ID=Phyra73525;Parent=Phyra73525;rank=1 scaffold_4 . exon 52660 52820 . - . ID=Phyra73525.1;Parent=Phyra73525;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 53445 54062 . - . ID=Phyra73526;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000012;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 53445 54062 . - . ID=Phyra73526;Parent=Phyra73526;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 53445 54062 . - 0 ID=Phyra73526;Parent=Phyra73526;rank=1 scaffold_4 . exon 53445 54062 . - . ID=Phyra73526.1;Parent=Phyra73526;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 55881 57617 . - . ID=Phyra73527;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000013;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 55881 57617 . - . ID=Phyra73527;Parent=Phyra73527;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 55881 56900 . - 0 ID=Phyra73527;Parent=Phyra73527;rank=4 scaffold_4 . exon 55881 56900 . - . ID=Phyra73527.4;Parent=Phyra73527;constitutive=1;rank=4 scaffold_4 . CDS 56979 57111 . - 0 ID=Phyra73527;Parent=Phyra73527;rank=3 scaffold_4 . exon 56979 57111 . - . ID=Phyra73527.3;Parent=Phyra73527;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 57167 57327 . - 0 ID=Phyra73527;Parent=Phyra73527;rank=2 scaffold_4 . exon 57167 57327 . - . ID=Phyra73527.2;Parent=Phyra73527;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 57399 57617 . - 0 ID=Phyra73527;Parent=Phyra73527;rank=1 scaffold_4 . exon 57399 57617 . - . ID=Phyra73527.1;Parent=Phyra73527;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 58259 59668 . + . ID=Phyra73528;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000014;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 58259 59668 . + . ID=Phyra73528;Parent=Phyra73528;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 58259 58411 . + 0 ID=Phyra73528;Parent=Phyra73528;rank=1 scaffold_4 . exon 58259 58411 . + . ID=Phyra73528.1;Parent=Phyra73528;constitutive=1;rank=1 scaffold_4 . CDS 58487 59668 . + 0 ID=Phyra73528;Parent=Phyra73528;rank=2 scaffold_4 . exon 58487 59668 . + . ID=Phyra73528.2;Parent=Phyra73528;constitutive=1;rank=2 scaffold_4 . repeat_region 61032 61052 . ? . description=trf scaffold_4 . repeat_region 62262 62288 . ? . description=trf scaffold_4 ensembl protein_coding_gene 60189 61196 . - . ID=Phyra73529;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000015;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 60189 61196 . - . ID=Phyra73529;Parent=Phyra73529;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 60189 60348 . - 0 ID=Phyra73529;Parent=Phyra73529;rank=3 scaffold_4 . exon 60189 60348 . - . ID=Phyra73529.3;Parent=Phyra73529;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 60419 61005 . - 0 ID=Phyra73529;Parent=Phyra73529;rank=2 scaffold_4 . exon 60419 61005 . - . ID=Phyra73529.2;Parent=Phyra73529;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 61095 61196 . - 0 ID=Phyra73529;Parent=Phyra73529;rank=1 scaffold_4 . exon 61095 61196 . - . ID=Phyra73529.1;Parent=Phyra73529;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 63117 64148 . - . ID=Phyra73530;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000016;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 63117 64148 . - . ID=Phyra73530;Parent=Phyra73530;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 63117 64148 . - 0 ID=Phyra73530;Parent=Phyra73530;rank=1 scaffold_4 . exon 63117 64148 . - . ID=Phyra73530.1;Parent=Phyra73530;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 66656 70699 . - . ID=Phyra73531;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000017;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 66656 70699 . - . ID=Phyra73531;Parent=Phyra73531;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 66656 70699 . - 0 ID=Phyra73531;Parent=Phyra73531;rank=1 scaffold_4 . exon 66656 70699 . - . ID=Phyra73531.1;Parent=Phyra73531;constitutive=1;rank=1 scaffold_4 . biological_region 71732 71738 0.999 - . logic_name=eponine scaffold_4 . biological_region 73665 73666 0.999 + . logic_name=eponine scaffold_4 . biological_region 74250 74250 0.999 - . logic_name=eponine scaffold_4 . biological_region 74410 74414 0.999 + . logic_name=eponine scaffold_4 . repeat_region 75239 75259 . ? . description=dust scaffold_4 . biological_region 75860 75867 0.999 + . logic_name=eponine scaffold_4 . biological_region 75883 75883 0.999 + . logic_name=eponine scaffold_4 . biological_region 75905 75908 0.999 - . logic_name=eponine scaffold_4 . biological_region 75960 75961 0.999 - . logic_name=eponine scaffold_4 . biological_region 75960 75966 0.999 + . logic_name=eponine scaffold_4 . biological_region 78549 78554 0.999 + . logic_name=eponine scaffold_4 . biological_region 78562 78568 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 70867 74532 . + . ID=Phyra73532;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000018;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 70867 74532 . + . ID=Phyra73532;Parent=Phyra73532;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 70867 71315 . + 0 ID=Phyra73532;Parent=Phyra73532;rank=1 scaffold_4 . exon 70867 71315 . + . ID=Phyra73532.1;Parent=Phyra73532;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 71377 71544 . + 0 ID=Phyra73532;Parent=Phyra73532;rank=2 scaffold_4 . exon 71377 71544 . + . ID=Phyra73532.2;Parent=Phyra73532;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 71613 72280 . + 0 ID=Phyra73532;Parent=Phyra73532;rank=3 scaffold_4 . exon 71613 72280 . + . ID=Phyra73532.3;Parent=Phyra73532;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 72365 74532 . + 0 ID=Phyra73532;Parent=Phyra73532;rank=4 scaffold_4 . exon 72365 74532 . + . ID=Phyra73532.4;Parent=Phyra73532;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 ensembl protein_coding_gene 75093 77414 . + . ID=Phyra73533;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000019;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 75093 77414 . + . ID=Phyra73533;Parent=Phyra73533;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 75093 77414 . + 0 ID=Phyra73533;Parent=Phyra73533;rank=1 scaffold_4 . exon 75093 77414 . + . ID=Phyra73533.1;Parent=Phyra73533;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 78810 82719 . + . ID=Phyra73534;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000020;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 78810 82719 . + . ID=Phyra73534;Parent=Phyra73534;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 78810 80456 . + 0 ID=Phyra73534;Parent=Phyra73534;rank=1 scaffold_4 . exon 78810 80456 . + . ID=Phyra73534.1;Parent=Phyra73534;constitutive=1;rank=1 scaffold_4 . CDS 80535 80607 . + 0 ID=Phyra73534;Parent=Phyra73534;rank=2 scaffold_4 . CDS 80635 80831 . + 0 ID=Phyra73534;Parent=Phyra73534;rank=3 scaffold_4 . CDS 81004 82719 . + 0 ID=Phyra73534;Parent=Phyra73534;rank=4 scaffold_4 . exon 80535 80607 . + . ID=Phyra73534.2;Parent=Phyra73534;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . exon 80635 80831 . + . ID=Phyra73534.3;Parent=Phyra73534;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . exon 81004 82719 . + . ID=Phyra73534.4;Parent=Phyra73534;constitutive=1;rank=4 scaffold_4 ensembl protein_coding_gene 84116 86848 . + . ID=Phyra73535;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000021;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 84116 86848 . + . ID=Phyra73535;Parent=Phyra73535;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 84116 85762 . + 0 ID=Phyra73535;Parent=Phyra73535;rank=1 scaffold_4 . exon 84116 85762 . + . ID=Phyra73535.1;Parent=Phyra73535;constitutive=1;rank=1 scaffold_4 . CDS 85841 85913 . + 0 ID=Phyra73535;Parent=Phyra73535;rank=2 scaffold_4 . exon 85841 85913 . + . ID=Phyra73535.2;Parent=Phyra73535;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 85941 86848 . + 0 ID=Phyra73535;Parent=Phyra73535;rank=3 scaffold_4 . exon 85941 86848 . + . ID=Phyra73535.3;Parent=Phyra73535;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . biological_region 89697 89698 0.999 + . logic_name=eponine scaffold_4 . biological_region 89786 89787 0.999 - . logic_name=eponine scaffold_4 . biological_region 89861 89865 0.999 - . logic_name=eponine scaffold_4 . biological_region 90013 90013 0.999 + . logic_name=eponine scaffold_4 . biological_region 90111 90113 0.999 - . logic_name=eponine scaffold_4 . repeat_region 93021 93070 . ? . description=dust scaffold_4 . biological_region 93242 93244 0.999 + . logic_name=eponine scaffold_4 . biological_region 93408 93409 0.999 - . logic_name=eponine scaffold_4 . biological_region 94230 94230 0.999 + . logic_name=eponine scaffold_4 . biological_region 94281 94282 0.999 + . logic_name=eponine scaffold_4 . biological_region 94610 94613 0.999 + . logic_name=eponine scaffold_4 . biological_region 94707 94708 0.999 - . logic_name=eponine scaffold_4 . repeat_region 96821 96942 . ? . description=trf scaffold_4 . biological_region 98860 98862 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 90017 90712 . + . ID=Phyra73536;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000022;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 90017 90712 . + . ID=Phyra73536;Parent=Phyra73536;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 90017 90712 . + 0 ID=Phyra73536;Parent=Phyra73536;rank=1 scaffold_4 . exon 90017 90712 . + . ID=Phyra73536.1;Parent=Phyra73536;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 91144 92981 . - . ID=Phyra73537;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000023;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 91144 92981 . - . ID=Phyra73537;Parent=Phyra73537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 91144 91524 . - 0 ID=Phyra73537;Parent=Phyra73537;rank=3 scaffold_4 . exon 91144 91524 . - . ID=Phyra73537.3;Parent=Phyra73537;constitutive=1;rank=3 scaffold_4 . CDS 91595 92772 . - 0 ID=Phyra73537;Parent=Phyra73537;rank=2 scaffold_4 . exon 91595 92772 . - . ID=Phyra73537.2;Parent=Phyra73537;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 92870 92981 . - 0 ID=Phyra73537;Parent=Phyra73537;rank=1 scaffold_4 . exon 92870 92981 . - . ID=Phyra73537.1;Parent=Phyra73537;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 96693 98257 . + . ID=Phyra73538;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000024;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 96693 98257 . + . ID=Phyra73538;Parent=Phyra73538;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 96693 96738 . + 0 ID=Phyra73538;Parent=Phyra73538;rank=1 scaffold_4 . exon 96693 96738 . + . ID=Phyra73538.1;Parent=Phyra73538;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 96801 97080 . + 0 ID=Phyra73538;Parent=Phyra73538;rank=2 scaffold_4 . exon 96801 97080 . + . ID=Phyra73538.2;Parent=Phyra73538;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_4 . CDS 97141 98257 . + 0 ID=Phyra73538;Parent=Phyra73538;rank=3 scaffold_4 . exon 97141 98257 . + . ID=Phyra73538.3;Parent=Phyra73538;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 ensembl protein_coding_gene 98508 100215 . - . ID=Phyra73539;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000025;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 98508 100215 . - . ID=Phyra73539;Parent=Phyra73539;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 98508 99992 . - 0 ID=Phyra73539;Parent=Phyra73539;rank=2 scaffold_4 . exon 98508 99992 . - . ID=Phyra73539.2;Parent=Phyra73539;constitutive=1;rank=2 scaffold_4 . CDS 100072 100215 . - 0 ID=Phyra73539;Parent=Phyra73539;rank=1 scaffold_4 ensembl protein_coding_gene 103153 103644 . + . ID=Phyra71115;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_4000002;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 103153 103644 . + . ID=Phyra71115;Parent=Phyra71115;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 103153 103644 . + 0 ID=Phyra71115;Parent=Phyra71115;rank=1 scaffold_4 . exon 103153 103644 . + . ID=Phyra71115.1;Parent=Phyra71115;constitutive=1;rank=1 scaffold_4 . exon 100072 100215 . - . ID=Phyra73539.1;Parent=Phyra73539;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 103836 104379 . - . ID=Phyra73541;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000027;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 103836 104379 . - . ID=Phyra73541;Parent=Phyra73541;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 103836 103984 . - 0 ID=Phyra73541;Parent=Phyra73541;rank=3 scaffold_4 . exon 103836 103984 . - . ID=Phyra73541.3;Parent=Phyra73541;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 104054 104167 . - 0 ID=Phyra73541;Parent=Phyra73541;rank=2 scaffold_4 . exon 104054 104167 . - . ID=Phyra73541.2;Parent=Phyra73541;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 104229 104379 . - 0 ID=Phyra73541;Parent=Phyra73541;rank=1 scaffold_4 . exon 104229 104379 . - . ID=Phyra73541.1;Parent=Phyra73541;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 104778 105278 . - . ID=Phyra73542;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000028;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 104778 105278 . - . ID=Phyra73542;Parent=Phyra73542;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 104778 105278 . - 0 ID=Phyra73542;Parent=Phyra73542;rank=1 scaffold_4 . exon 104778 105278 . - . ID=Phyra73542.1;Parent=Phyra73542;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 105422 106806 . - . ID=Phyra73543;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000029;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 105422 106806 . - . ID=Phyra73543;Parent=Phyra73543;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 105422 106062 . - 0 ID=Phyra73543;Parent=Phyra73543;rank=2 scaffold_4 . exon 105422 106062 . - . ID=Phyra73543.2;Parent=Phyra73543;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 106227 106806 . - 0 ID=Phyra73543;Parent=Phyra73543;rank=1 scaffold_4 . exon 106227 106806 . - . ID=Phyra73543.1;Parent=Phyra73543;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 107908 109749 . + . ID=Phyra73545;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000031;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 107908 109749 . + . ID=Phyra73545;Parent=Phyra73545;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 107908 109749 . + 0 ID=Phyra73545;Parent=Phyra73545;rank=1 scaffold_4 . exon 107908 109749 . + . ID=Phyra73545.1;Parent=Phyra73545;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 107006 107762 . - . ID=Phyra93644;biotype=protein_coding;external_name=C_scaffold_4000008;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 107006 107762 . - . ID=Phyra93644;Parent=Phyra93644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 107006 107149 . - 0 ID=Phyra93644;Parent=Phyra93644;rank=2 scaffold_4 . exon 107006 107149 . - . ID=Phyra93644.2;Parent=Phyra93644;constitutive=1;rank=2 scaffold_4 . CDS 107217 107762 . - 0 ID=Phyra93644;Parent=Phyra93644;rank=1 scaffold_4 . exon 107217 107762 . - . ID=Phyra93644.1;Parent=Phyra93644;constitutive=1;rank=1 scaffold_4 . biological_region 109512 109514 0.999 - . logic_name=eponine scaffold_4 . biological_region 111742 111747 0.999 - . logic_name=eponine scaffold_4 . repeat_region 112383 112757 . ? . description=trf scaffold_4 . repeat_region 112384 112762 . ? . description=trf scaffold_4 . repeat_region 112957 113178 . ? . description=trf scaffold_4 . repeat_region 113212 113444 . ? . description=trf scaffold_4 . biological_region 113380 113382 0.999 - . logic_name=eponine scaffold_4 . repeat_region 113408 113699 . ? . description=trf scaffold_4 . repeat_region 113425 113684 . ? . description=trf scaffold_4 . biological_region 115204 115205 0.999 - . logic_name=eponine scaffold_4 . repeat_region 116859 116866 . ? . description=dust scaffold_4 ensembl protein_coding_gene 109880 111178 . - . ID=Phyra73546;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000032;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 109880 111178 . - . ID=Phyra73546;Parent=Phyra73546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 109880 111178 . - 0 ID=Phyra73546;Parent=Phyra73546;rank=1 scaffold_4 . exon 109880 111178 . - . ID=Phyra73546.1;Parent=Phyra73546;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 111979 113985 . + . ID=Phyra73547;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000033;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 111979 113985 . + . ID=Phyra73547;Parent=Phyra73547;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 111979 113985 . + 0 ID=Phyra73547;Parent=Phyra73547;rank=1 scaffold_4 . exon 111979 113985 . + . ID=Phyra73547.1;Parent=Phyra73547;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 114052 114873 . - . ID=Phyra73548;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000034;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 114052 114873 . - . ID=Phyra73548;Parent=Phyra73548;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 114052 114873 . - 0 ID=Phyra73548;Parent=Phyra73548;rank=1 scaffold_4 . exon 114052 114873 . - . ID=Phyra73548.1;Parent=Phyra73548;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 115376 116170 . - . ID=Phyra73549;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000035;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 115376 116170 . - . ID=Phyra73549;Parent=Phyra73549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 115376 116170 . - 0 ID=Phyra73549;Parent=Phyra73549;rank=1 scaffold_4 . exon 115376 116170 . - . ID=Phyra73549.1;Parent=Phyra73549;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 116948 117739 . - . ID=Phyra73550;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000036;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 116948 117739 . - . ID=Phyra73550;Parent=Phyra73550;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 116948 117739 . - 0 ID=Phyra73550;Parent=Phyra73550;rank=1 scaffold_4 . exon 116948 117739 . - . ID=Phyra73550.1;Parent=Phyra73550;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 118177 119022 . - . ID=Phyra73551;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000037;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 118177 119022 . - . ID=Phyra73551;Parent=Phyra73551;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 118177 119022 . - 0 ID=Phyra73551;Parent=Phyra73551;rank=1 scaffold_4 . exon 118177 119022 . - . ID=Phyra73551.1;Parent=Phyra73551;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 120072 120920 . + . ID=Phyra73552;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000038;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 120072 120920 . + . ID=Phyra73552;Parent=Phyra73552;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 120072 120920 . + 0 ID=Phyra73552;Parent=Phyra73552;rank=1 scaffold_4 . exon 120072 120920 . + . ID=Phyra73552.1;Parent=Phyra73552;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 121640 122407 . + . ID=Phyra73553;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000039;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 121640 122407 . + . ID=Phyra73553;Parent=Phyra73553;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 121640 122407 . + 0 ID=Phyra73553;Parent=Phyra73553;rank=1 scaffold_4 . exon 121640 122407 . + . ID=Phyra73553.1;Parent=Phyra73553;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 125604 127848 . + . ID=Phyra73554;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000040;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 125604 127848 . + . ID=Phyra73554;Parent=Phyra73554;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 125604 125723 . + 0 ID=Phyra73554;Parent=Phyra73554;rank=1 scaffold_4 . exon 125604 125723 . + . ID=Phyra73554.1;Parent=Phyra73554;constitutive=1;rank=1 scaffold_4 . CDS 125762 125899 . + 0 ID=Phyra73554;Parent=Phyra73554;rank=2 scaffold_4 . exon 125762 125899 . + . ID=Phyra73554.2;Parent=Phyra73554;constitutive=1;rank=2 scaffold_4 . CDS 125983 126090 . + 0 ID=Phyra73554;Parent=Phyra73554;rank=3 scaffold_4 . exon 125983 126090 . + . ID=Phyra73554.3;Parent=Phyra73554;constitutive=1;rank=3 scaffold_4 . CDS 126167 126559 . + 0 ID=Phyra73554;Parent=Phyra73554;rank=4 scaffold_4 . exon 126167 126559 . + . ID=Phyra73554.4;Parent=Phyra73554;constitutive=1;rank=4 scaffold_4 . CDS 126659 126760 . + 0 ID=Phyra73554;Parent=Phyra73554;rank=5 scaffold_4 . exon 126659 126760 . + . ID=Phyra73554.5;Parent=Phyra73554;constitutive=1;rank=5 scaffold_4 . CDS 126840 127151 . + 0 ID=Phyra73554;Parent=Phyra73554;rank=6 scaffold_4 . exon 126840 127151 . + . ID=Phyra73554.6;Parent=Phyra73554;constitutive=1;rank=6 scaffold_4 . CDS 127225 127341 . + 0 ID=Phyra73554;Parent=Phyra73554;rank=7 scaffold_4 . exon 127225 127341 . + . ID=Phyra73554.7;Parent=Phyra73554;constitutive=1;rank=7 scaffold_4 . CDS 127414 127512 . + 0 ID=Phyra73554;Parent=Phyra73554;rank=8 scaffold_4 . exon 127414 127512 . + . ID=Phyra73554.8;Parent=Phyra73554;constitutive=1;rank=8 scaffold_4 . CDS 127622 127693 . + 0 ID=Phyra73554;Parent=Phyra73554;rank=9 scaffold_4 . exon 127622 127693 . + . ID=Phyra73554.9;Parent=Phyra73554;constitutive=1;rank=9 scaffold_4 . CDS 127762 127848 . + 0 ID=Phyra73554;Parent=Phyra73554;rank=10 scaffold_4 . exon 127762 127848 . + . ID=Phyra73554.10;Parent=Phyra73554;constitutive=1;rank=10 scaffold_4 ensembl protein_coding_gene 128199 129802 . - . ID=Phyra73555;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000041;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 128199 129802 . - . ID=Phyra73555;Parent=Phyra73555;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 128199 129003 . - 0 ID=Phyra73555;Parent=Phyra73555;rank=2 scaffold_4 . exon 128199 129003 . - . ID=Phyra73555.2;Parent=Phyra73555;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 129690 129802 . - 0 ID=Phyra73555;Parent=Phyra73555;rank=1 scaffold_4 . biological_region 130774 130774 0.999 + . logic_name=eponine scaffold_4 . biological_region 130829 130830 0.999 - . logic_name=eponine scaffold_4 . biological_region 132976 132977 0.999 + . logic_name=eponine scaffold_4 . biological_region 134883 134885 0.999 - . logic_name=eponine scaffold_4 . biological_region 135242 135250 0.999 + . logic_name=eponine scaffold_4 . biological_region 135277 135290 0.999 + . logic_name=eponine scaffold_4 . biological_region 135310 135316 0.999 + . logic_name=eponine scaffold_4 . biological_region 135319 135323 0.999 - . logic_name=eponine scaffold_4 . biological_region 135341 135348 0.999 - . logic_name=eponine scaffold_4 . biological_region 135387 135390 0.999 - . logic_name=eponine scaffold_4 . biological_region 135462 135466 0.999 + . logic_name=eponine scaffold_4 . biological_region 135745 135745 0.999 + . logic_name=eponine scaffold_4 . biological_region 135819 135822 0.999 + . logic_name=eponine scaffold_4 . repeat_region 138060 148356 . ? . description=dust scaffold_4 . exon 129690 129802 . - . ID=Phyra73555.1;Parent=Phyra73555;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 130457 132064 . - . ID=Phyra73556;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000042;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 130457 132064 . - . ID=Phyra73556;Parent=Phyra73556;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 130457 132064 . - 0 ID=Phyra73556;Parent=Phyra73556;rank=1 scaffold_4 . exon 130457 132064 . - . ID=Phyra73556.1;Parent=Phyra73556;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 132996 134909 . - . ID=Phyra73557;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000043;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 132996 134909 . - . ID=Phyra73557;Parent=Phyra73557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 132996 134014 . - 0 ID=Phyra73557;Parent=Phyra73557;rank=3 scaffold_4 . exon 132996 134014 . - . ID=Phyra73557.3;Parent=Phyra73557;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 134107 134147 . - 0 ID=Phyra73557;Parent=Phyra73557;rank=2 scaffold_4 . exon 134107 134147 . - . ID=Phyra73557.2;Parent=Phyra73557;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 134197 134909 . - 0 ID=Phyra73557;Parent=Phyra73557;rank=1 scaffold_4 . exon 134197 134909 . - . ID=Phyra73557.1;Parent=Phyra73557;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 135042 137891 . + . ID=Phyra73558;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000044;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 135042 137891 . + . ID=Phyra73558;Parent=Phyra73558;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 135042 137891 . + 0 ID=Phyra73558;Parent=Phyra73558;rank=1 scaffold_4 . exon 135042 137891 . + . ID=Phyra73558.1;Parent=Phyra73558;constitutive=1;rank=1 scaffold_4 . biological_region 155549 155553 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 150070 152439 . + . ID=Phyra73559;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000045;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 150070 152439 . + . ID=Phyra73559;Parent=Phyra73559;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 150070 152439 . + 0 ID=Phyra73559;Parent=Phyra73559;rank=1 scaffold_4 . exon 150070 152439 . + . ID=Phyra73559.1;Parent=Phyra73559;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 152613 154924 . - . ID=Phyra73560;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000046;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 152613 154924 . - . ID=Phyra73560;Parent=Phyra73560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 152613 152618 . - 0 ID=Phyra73560;Parent=Phyra73560;rank=2 scaffold_4 . exon 152613 152618 . - . ID=Phyra73560.2;Parent=Phyra73560;constitutive=1;rank=2 scaffold_4 . CDS 152699 154924 . - 0 ID=Phyra73560;Parent=Phyra73560;rank=1 scaffold_4 . exon 152699 154924 . - . ID=Phyra73560.1;Parent=Phyra73560;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 158674 160266 . + . ID=Phyra73561;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000047;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 158674 160266 . + . ID=Phyra73561;Parent=Phyra73561;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 158674 160266 . + 0 ID=Phyra73561;Parent=Phyra73561;rank=1 scaffold_4 . exon 158674 160266 . + . ID=Phyra73561.1;Parent=Phyra73561;constitutive=1;rank=1 scaffold_4 . repeat_region 161007 161014 . ? . description=dust scaffold_4 . repeat_region 165289 165378 . ? . description=trf scaffold_4 . repeat_region 165292 165368 . ? . description=trf scaffold_4 . repeat_region 165678 166296 . ? . description=trf scaffold_4 . repeat_region 166246 166699 . ? . description=trf scaffold_4 . repeat_region 166769 167105 . ? . description=trf scaffold_4 . repeat_region 167072 167245 . ? . description=trf scaffold_4 . repeat_region 167241 167635 . ? . description=trf scaffold_4 . repeat_region 167646 167857 . ? . description=trf scaffold_4 . repeat_region 168246 168369 . ? . description=trf scaffold_4 . repeat_region 168345 168438 . ? . description=trf scaffold_4 . repeat_region 168345 168438 . ? . description=trf scaffold_4 . repeat_region 168360 168439 . ? . description=trf scaffold_4 ensembl protein_coding_gene 165174 168640 . - . ID=Phyra73563;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000049;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 165174 168640 . - . ID=Phyra73563;Parent=Phyra73563;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 165174 165938 . - 0 ID=Phyra73563;Parent=Phyra73563;rank=3 scaffold_4 . exon 165174 165938 . - . ID=Phyra73563.3;Parent=Phyra73563;constitutive=1;rank=3 scaffold_4 . CDS 165967 167145 . - 0 ID=Phyra73563;Parent=Phyra73563;rank=2 scaffold_4 . exon 165967 167145 . - . ID=Phyra73563.2;Parent=Phyra73563;constitutive=1;rank=2 scaffold_4 . CDS 167207 168640 . - 0 ID=Phyra73563;Parent=Phyra73563;rank=1 scaffold_4 . exon 167207 168640 . - . ID=Phyra73563.1;Parent=Phyra73563;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 163619 164838 . - . ID=Phyra93645;biotype=protein_coding;external_name=C_scaffold_4000009;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 163619 164838 . - . ID=Phyra93645;Parent=Phyra93645;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 163619 163696 . - 0 ID=Phyra93645;Parent=Phyra93645;rank=3 scaffold_4 . exon 163619 163696 . - . ID=Phyra93645.3;Parent=Phyra93645;constitutive=1;rank=3 scaffold_4 . CDS 163857 164171 . - 0 ID=Phyra93645;Parent=Phyra93645;rank=2 scaffold_4 . exon 163857 164171 . - . ID=Phyra93645.2;Parent=Phyra93645;constitutive=1;rank=2 scaffold_4 . CDS 164290 164838 . - 0 ID=Phyra93645;Parent=Phyra93645;rank=1 scaffold_4 . exon 164290 164838 . - . ID=Phyra93645.1;Parent=Phyra93645;constitutive=1;rank=1 scaffold_4 . biological_region 169353 169355 0.999 + . logic_name=eponine scaffold_4 . biological_region 171956 171958 0.999 - . logic_name=eponine scaffold_4 . biological_region 175877 175878 0.999 - . logic_name=eponine scaffold_4 . biological_region 176064 176068 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 170450 172708 . + . ID=Phyra73564;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000050;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 170450 172708 . + . ID=Phyra73564;Parent=Phyra73564;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 170450 172708 . + 0 ID=Phyra73564;Parent=Phyra73564;rank=1 scaffold_4 . exon 170450 172708 . + . ID=Phyra73564.1;Parent=Phyra73564;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 173566 175356 . + . ID=Phyra73565;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000051;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 173566 175356 . + . ID=Phyra73565;Parent=Phyra73565;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 173566 175028 . + 0 ID=Phyra73565;Parent=Phyra73565;rank=1 scaffold_4 . exon 173566 175028 . + . ID=Phyra73565.1;Parent=Phyra73565;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 175335 175356 . + 0 ID=Phyra73565;Parent=Phyra73565;rank=2 scaffold_4 . exon 175335 175356 . + . ID=Phyra73565.2;Parent=Phyra73565;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 ensembl protein_coding_gene 178509 180257 . + . ID=Phyra73566;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000052;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 178509 180257 . + . ID=Phyra73566;Parent=Phyra73566;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 178509 180257 . + 0 ID=Phyra73566;Parent=Phyra73566;rank=1 scaffold_4 . exon 178509 180257 . + . ID=Phyra73566.1;Parent=Phyra73566;constitutive=1;rank=1 scaffold_4 . repeat_region 184369 184418 . ? . description=dust scaffold_4 ensembl protein_coding_gene 180548 181612 . + . ID=Phyra73567;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000053;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 180548 181612 . + . ID=Phyra73567;Parent=Phyra73567;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 180548 181612 . + 0 ID=Phyra73567;Parent=Phyra73567;rank=1 scaffold_4 . exon 180548 181612 . + . ID=Phyra73567.1;Parent=Phyra73567;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 181693 183131 . - . ID=Phyra73568;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000054;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 181693 183131 . - . ID=Phyra73568;Parent=Phyra73568;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 181693 182393 . - 0 ID=Phyra73568;Parent=Phyra73568;rank=3 scaffold_4 . exon 181693 182393 . - . ID=Phyra73568.3;Parent=Phyra73568;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 182473 182747 . - 0 ID=Phyra73568;Parent=Phyra73568;rank=2 scaffold_4 . exon 182473 182747 . - . ID=Phyra73568.2;Parent=Phyra73568;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 182824 183131 . - 0 ID=Phyra73568;Parent=Phyra73568;rank=1 scaffold_4 . exon 182824 183131 . - . ID=Phyra73568.1;Parent=Phyra73568;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 185074 185622 . - . ID=Phyra73569;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000055;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 185074 185622 . - . ID=Phyra73569;Parent=Phyra73569;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 185074 185622 . - 0 ID=Phyra73569;Parent=Phyra73569;rank=1 scaffold_4 . exon 185074 185622 . - . ID=Phyra73569.1;Parent=Phyra73569;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 186605 194610 . + . ID=Phyra93648;biotype=protein_coding;external_name=C_scaffold_4000012;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 186605 194610 . + . ID=Phyra93648;Parent=Phyra93648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 186605 186864 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=1 scaffold_4 . exon 186605 186864 . + . ID=Phyra93648.1;Parent=Phyra93648;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 186930 186995 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=2 scaffold_4 . exon 186930 186995 . + . ID=Phyra93648.2;Parent=Phyra93648;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 187057 187269 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=3 scaffold_4 . exon 187057 187269 . + . ID=Phyra93648.3;Parent=Phyra93648;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . CDS 187329 187466 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=4 scaffold_4 . exon 187329 187466 . + . ID=Phyra93648.4;Parent=Phyra93648;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_4 . CDS 187537 187605 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=5 scaffold_4 . exon 187537 187605 . + . ID=Phyra93648.5;Parent=Phyra93648;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_4 . CDS 187669 188096 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=6 scaffold_4 . exon 187669 188096 . + . ID=Phyra93648.6;Parent=Phyra93648;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_4 . CDS 188199 188841 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=7 scaffold_4 . exon 188199 188841 . + . ID=Phyra93648.7;Parent=Phyra93648;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_4 . CDS 188866 189425 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=8 scaffold_4 . CDS 189462 189517 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=9 scaffold_4 . CDS 189560 190056 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=10 scaffold_4 . CDS 190937 191214 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=11 scaffold_4 . CDS 191290 191528 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=12 scaffold_4 . CDS 191713 192027 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=13 scaffold_4 . CDS 192061 192474 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=14 scaffold_4 . CDS 192520 192906 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=15 scaffold_4 . CDS 193096 193541 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=16 scaffold_4 . CDS 193563 193960 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=17 scaffold_4 . CDS 193985 194109 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=18 scaffold_4 . CDS 194158 194610 . + 0 ID=Phyra93648;Parent=Phyra93648;rank=19 scaffold_4 . biological_region 188730 188731 0.999 + . logic_name=eponine scaffold_4 . biological_region 189187 189193 0.999 - . logic_name=eponine scaffold_4 . biological_region 189324 189327 0.999 + . logic_name=eponine scaffold_4 . biological_region 190141 190142 0.999 + . logic_name=eponine scaffold_4 . biological_region 191013 191020 0.999 + . logic_name=eponine scaffold_4 . biological_region 191069 191073 0.999 - . logic_name=eponine scaffold_4 . biological_region 191123 191129 0.999 + . logic_name=eponine scaffold_4 . biological_region 191191 191196 0.999 - . logic_name=eponine scaffold_4 . biological_region 191258 191258 0.999 - . logic_name=eponine scaffold_4 . biological_region 193531 193532 0.999 + . logic_name=eponine scaffold_4 . biological_region 194996 194998 0.999 + . logic_name=eponine scaffold_4 . biological_region 195046 195052 0.999 + . logic_name=eponine scaffold_4 . biological_region 195431 195432 0.999 - . logic_name=eponine scaffold_4 . biological_region 195493 195497 0.999 - . logic_name=eponine scaffold_4 . repeat_region 196991 197043 . ? . description=trf scaffold_4 ensembl protein_coding_gene 194760 196568 . - . ID=Phyra73571;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000057;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 194760 196568 . - . ID=Phyra73571;Parent=Phyra73571;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 194760 196568 . - 0 ID=Phyra73571;Parent=Phyra73571;rank=1 scaffold_4 . exon 194760 196568 . - . ID=Phyra73571.1;Parent=Phyra73571;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 197647 198397 . + . ID=Phyra73572;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000058;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 197647 198397 . + . ID=Phyra73572;Parent=Phyra73572;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 197647 197894 . + 0 ID=Phyra73572;Parent=Phyra73572;rank=1 scaffold_4 . exon 197647 197894 . + . ID=Phyra73572.1;Parent=Phyra73572;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 198094 198397 . + 0 ID=Phyra73572;Parent=Phyra73572;rank=2 scaffold_4 . exon 198094 198397 . + . ID=Phyra73572.2;Parent=Phyra73572;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 ensembl protein_coding_gene 198541 200559 . - . ID=Phyra73573;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000059;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 198541 200559 . - . ID=Phyra73573;Parent=Phyra73573;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 198541 200559 . - 0 ID=Phyra73573;Parent=Phyra73573;rank=1 scaffold_4 . exon 198541 200559 . - . ID=Phyra73573.1;Parent=Phyra73573;constitutive=1;rank=1 scaffold_4 . exon 188866 189425 . + . ID=Phyra93648.8;Parent=Phyra93648;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_4 . exon 189462 189517 . + . ID=Phyra93648.9;Parent=Phyra93648;constitutive=1;ensembl_phase=1;rank=9 scaffold_4 . exon 189560 190056 . + . ID=Phyra93648.10;Parent=Phyra93648;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_4 . exon 190937 191214 . + . ID=Phyra93648.11;Parent=Phyra93648;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_4 . exon 191290 191528 . + . ID=Phyra93648.12;Parent=Phyra93648;constitutive=1;ensembl_phase=1;rank=12 scaffold_4 . exon 191713 192027 . + . ID=Phyra93648.13;Parent=Phyra93648;constitutive=1;rank=13 scaffold_4 . exon 192061 192474 . + . ID=Phyra93648.14;Parent=Phyra93648;constitutive=1;rank=14 scaffold_4 . exon 192520 192906 . + . ID=Phyra93648.15;Parent=Phyra93648;constitutive=1;rank=15 scaffold_4 . exon 193096 193541 . + . ID=Phyra93648.16;Parent=Phyra93648;constitutive=1;ensembl_end_phase=2;rank=16 scaffold_4 . exon 193563 193960 . + . ID=Phyra93648.17;Parent=Phyra93648;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=17 scaffold_4 . exon 193985 194109 . + . ID=Phyra93648.18;Parent=Phyra93648;constitutive=1;ensembl_phase=1;rank=18 scaffold_4 . exon 194158 194610 . + . ID=Phyra93648.19;Parent=Phyra93648;constitutive=1;rank=19 scaffold_4 . repeat_region 201093 201102 . ? . description=dust scaffold_4 . repeat_region 204444 204451 . ? . description=dust scaffold_4 . repeat_region 204645 204667 . ? . description=dust scaffold_4 ensembl protein_coding_gene 206352 208853 . - . ID=Phyra48363;biotype=protein_coding;external_name=gwEuk.4.2.1;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 206352 208853 . - . ID=Phyra48363;Parent=Phyra48363;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 206352 208853 . - 0 ID=Phyra48363;Parent=Phyra48363;rank=1 scaffold_4 . exon 206352 208853 . - . ID=Phyra48363.1;Parent=Phyra48363;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 204153 205083 . + . ID=Phyra73574;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000060;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 204153 205083 . + . ID=Phyra73574;Parent=Phyra73574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 204153 204415 . + 0 ID=Phyra73574;Parent=Phyra73574;rank=1 scaffold_4 . exon 204153 204415 . + . ID=Phyra73574.1;Parent=Phyra73574;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 204503 204586 . + 0 ID=Phyra73574;Parent=Phyra73574;rank=2 scaffold_4 . exon 204503 204586 . + . ID=Phyra73574.2;Parent=Phyra73574;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 204671 204852 . + 0 ID=Phyra73574;Parent=Phyra73574;rank=3 scaffold_4 . exon 204671 204852 . + . ID=Phyra73574.3;Parent=Phyra73574;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 205079 205083 . + 0 ID=Phyra73574;Parent=Phyra73574;rank=4 scaffold_4 . exon 205079 205083 . + . ID=Phyra73574.4;Parent=Phyra73574;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 . biological_region 214877 214878 0.999 - . logic_name=eponine scaffold_4 . biological_region 215181 215187 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 217423 218009 . + . ID=Phyra73576;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000062;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 217423 218009 . + . ID=Phyra73576;Parent=Phyra73576;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 217423 217425 . + 0 ID=Phyra73576;Parent=Phyra73576;rank=1 scaffold_4 . exon 217423 217425 . + . ID=Phyra73576.1;Parent=Phyra73576;constitutive=1;rank=1 scaffold_4 . CDS 217506 217832 . + 0 ID=Phyra73576;Parent=Phyra73576;rank=2 scaffold_4 . exon 217506 217832 . + . ID=Phyra73576.2;Parent=Phyra73576;constitutive=1;rank=2 scaffold_4 . CDS 217908 218009 . + 0 ID=Phyra73576;Parent=Phyra73576;rank=3 scaffold_4 . exon 217908 218009 . + . ID=Phyra73576.3;Parent=Phyra73576;constitutive=1;rank=3 scaffold_4 ensembl protein_coding_gene 218175 221030 . - . ID=Phyra73577;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000063;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 218175 221030 . - . ID=Phyra73577;Parent=Phyra73577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 218175 221030 . - 0 ID=Phyra73577;Parent=Phyra73577;rank=1 scaffold_4 . exon 218175 221030 . - . ID=Phyra73577.1;Parent=Phyra73577;constitutive=1;rank=1 scaffold_4 . repeat_region 220474 220526 . ? . description=trf scaffold_4 . repeat_region 220915 220971 . ? . description=trf scaffold_4 . repeat_region 220945 220964 . ? . description=trf scaffold_4 . repeat_region 220956 221008 . ? . description=trf scaffold_4 . repeat_region 227122 227147 . ? . description=trf scaffold_4 . repeat_region 227968 228059 . ? . description=trf scaffold_4 ensembl protein_coding_gene 221977 224634 . + . ID=Phyra73578;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000064;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 221977 224634 . + . ID=Phyra73578;Parent=Phyra73578;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 221977 221983 . + 0 ID=Phyra73578;Parent=Phyra73578;rank=1 scaffold_4 . exon 221977 221983 . + . ID=Phyra73578.1;Parent=Phyra73578;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 222076 222899 . + 0 ID=Phyra73578;Parent=Phyra73578;rank=2 scaffold_4 . exon 222076 222899 . + . ID=Phyra73578.2;Parent=Phyra73578;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 223045 224634 . + 0 ID=Phyra73578;Parent=Phyra73578;rank=3 scaffold_4 . exon 223045 224634 . + . ID=Phyra73578.3;Parent=Phyra73578;constitutive=1;rank=3 scaffold_4 ensembl protein_coding_gene 225796 227283 . + . ID=Phyra73579;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000065;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 225796 227283 . + . ID=Phyra73579;Parent=Phyra73579;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 225796 227283 . + 0 ID=Phyra73579;Parent=Phyra73579;rank=1 scaffold_4 . exon 225796 227283 . + . ID=Phyra73579.1;Parent=Phyra73579;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 227931 228912 . - . ID=Phyra93650;biotype=protein_coding;external_name=C_scaffold_4000014;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 227931 228912 . - . ID=Phyra93650;Parent=Phyra93650;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 227931 228091 . - 0 ID=Phyra93650;Parent=Phyra93650;rank=4 scaffold_4 . exon 227931 228091 . - . ID=Phyra93650.4;Parent=Phyra93650;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 . CDS 228280 228353 . - 0 ID=Phyra93650;Parent=Phyra93650;rank=3 scaffold_4 . exon 228280 228353 . - . ID=Phyra93650.3;Parent=Phyra93650;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 228396 228487 . - 0 ID=Phyra93650;Parent=Phyra93650;rank=2 scaffold_4 . CDS 228544 228912 . - 0 ID=Phyra93650;Parent=Phyra93650;rank=1 scaffold_4 . biological_region 233002 233004 0.999 + . logic_name=eponine scaffold_4 . repeat_region 233866 233899 . ? . description=dust scaffold_4 . repeat_region 233995 234002 . ? . description=dust scaffold_4 . biological_region 237638 237641 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 229841 230869 . - . ID=Phyra73581;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000067;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 229841 230869 . - . ID=Phyra73581;Parent=Phyra73581;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 229841 230130 . - 0 ID=Phyra73581;Parent=Phyra73581;rank=3 scaffold_4 . exon 229841 230130 . - . ID=Phyra73581.3;Parent=Phyra73581;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 230205 230409 . - 0 ID=Phyra73581;Parent=Phyra73581;rank=2 scaffold_4 . exon 230205 230409 . - . ID=Phyra73581.2;Parent=Phyra73581;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 230483 230869 . - 0 ID=Phyra73581;Parent=Phyra73581;rank=1 scaffold_4 . exon 230483 230869 . - . ID=Phyra73581.1;Parent=Phyra73581;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 234948 235928 . + . ID=Phyra73582;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000068;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 234948 235928 . + . ID=Phyra73582;Parent=Phyra73582;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 234948 235928 . + 0 ID=Phyra73582;Parent=Phyra73582;rank=1 scaffold_4 . exon 234948 235928 . + . ID=Phyra73582.1;Parent=Phyra73582;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 236411 239017 . + . ID=Phyra73583;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000069;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 236411 239017 . + . ID=Phyra73583;Parent=Phyra73583;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 236411 237280 . + 0 ID=Phyra73583;Parent=Phyra73583;rank=1 scaffold_4 . exon 236411 237280 . + . ID=Phyra73583.1;Parent=Phyra73583;constitutive=1;rank=1 scaffold_4 . CDS 237995 239017 . + 0 ID=Phyra73583;Parent=Phyra73583;rank=2 scaffold_4 . exon 237995 239017 . + . ID=Phyra73583.2;Parent=Phyra73583;constitutive=1;rank=2 scaffold_4 . exon 228396 228487 . - . ID=Phyra93650.2;Parent=Phyra93650;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . exon 228544 228912 . - . ID=Phyra93650.1;Parent=Phyra93650;constitutive=1;rank=1 scaffold_4 . repeat_region 238643 238917 . ? . description=trf scaffold_4 . repeat_region 241411 241459 . ? . description=trf scaffold_4 . repeat_region 244512 244539 . ? . description=trf scaffold_4 . repeat_region 244769 244812 . ? . description=trf scaffold_4 . repeat_region 246327 246406 . ? . description=trf scaffold_4 . repeat_region 247626 247653 . ? . description=trf scaffold_4 ensembl protein_coding_gene 239576 240439 . + . ID=Phyra73584;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000070;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 239576 240439 . + . ID=Phyra73584;Parent=Phyra73584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 239576 240439 . + 0 ID=Phyra73584;Parent=Phyra73584;rank=1 scaffold_4 . exon 239576 240439 . + . ID=Phyra73584.1;Parent=Phyra73584;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 244539 246929 . + . ID=Phyra73585;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000071;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 244539 246929 . + . ID=Phyra73585;Parent=Phyra73585;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 244539 244818 . + 0 ID=Phyra73585;Parent=Phyra73585;rank=1 scaffold_4 . exon 244539 244818 . + . ID=Phyra73585.1;Parent=Phyra73585;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 244880 246772 . + 0 ID=Phyra73585;Parent=Phyra73585;rank=2 scaffold_4 . exon 244880 246772 . + . ID=Phyra73585.2;Parent=Phyra73585;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 246922 246929 . + 0 ID=Phyra73585;Parent=Phyra73585;rank=3 scaffold_4 . exon 246922 246929 . + . ID=Phyra73585.3;Parent=Phyra73585;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . repeat_region 248935 249891 . ? . description=dust scaffold_4 . repeat_region 251204 251253 . ? . description=dust scaffold_4 . repeat_region 251957 252247 . ? . description=dust scaffold_4 . repeat_region 252807 252832 . ? . description=dust scaffold_4 . biological_region 253451 253453 0.999 - . logic_name=eponine scaffold_4 . repeat_region 258017 258024 . ? . description=dust scaffold_4 . biological_region 258031 258036 0.999 + . logic_name=eponine scaffold_4 . biological_region 258103 258103 0.999 - . logic_name=eponine scaffold_4 . biological_region 258125 258129 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 253017 253370 . + . ID=Phyra73586;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000072;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 253017 253370 . + . ID=Phyra73586;Parent=Phyra73586;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 253017 253370 . + 0 ID=Phyra73586;Parent=Phyra73586;rank=1 scaffold_4 . exon 253017 253370 . + . ID=Phyra73586.1;Parent=Phyra73586;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 255770 257163 . - . ID=Phyra73587;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000073;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 255770 257163 . - . ID=Phyra73587;Parent=Phyra73587;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 255770 255954 . - 0 ID=Phyra73587;Parent=Phyra73587;rank=5 scaffold_4 . exon 255770 255954 . - . ID=Phyra73587.5;Parent=Phyra73587;constitutive=1;ensembl_phase=1;rank=5 scaffold_4 . CDS 256035 256224 . - 0 ID=Phyra73587;Parent=Phyra73587;rank=4 scaffold_4 . exon 256035 256224 . - . ID=Phyra73587.4;Parent=Phyra73587;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_4 . CDS 256272 256341 . - 0 ID=Phyra73587;Parent=Phyra73587;rank=3 scaffold_4 . exon 256272 256341 . - . ID=Phyra73587.3;Parent=Phyra73587;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 256486 256626 . - 0 ID=Phyra73587;Parent=Phyra73587;rank=2 scaffold_4 . exon 256486 256626 . - . ID=Phyra73587.2;Parent=Phyra73587;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 256790 257163 . - 0 ID=Phyra73587;Parent=Phyra73587;rank=1 scaffold_4 . exon 256790 257163 . - . ID=Phyra73587.1;Parent=Phyra73587;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . repeat_region 258181 258234 . ? . description=trf scaffold_4 ensembl protein_coding_gene 259380 259971 . + . ID=Phyra73588;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000074;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 259380 259971 . + . ID=Phyra73588;Parent=Phyra73588;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 259380 259606 . + 0 ID=Phyra73588;Parent=Phyra73588;rank=1 scaffold_4 . exon 259380 259606 . + . ID=Phyra73588.1;Parent=Phyra73588;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 259674 259971 . + 0 ID=Phyra73588;Parent=Phyra73588;rank=2 scaffold_4 . exon 259674 259971 . + . ID=Phyra73588.2;Parent=Phyra73588;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 ensembl protein_coding_gene 260216 264409 . - . ID=Phyra73589;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000075;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 260216 264409 . - . ID=Phyra73589;Parent=Phyra73589;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 260216 262273 . - 0 ID=Phyra73589;Parent=Phyra73589;rank=7 scaffold_4 . exon 260216 262273 . - . ID=Phyra73589.7;Parent=Phyra73589;constitutive=1;rank=7 scaffold_4 . CDS 262344 262451 . - 0 ID=Phyra73589;Parent=Phyra73589;rank=6 scaffold_4 . exon 262344 262451 . - . ID=Phyra73589.6;Parent=Phyra73589;constitutive=1;rank=6 scaffold_4 . CDS 262518 262988 . - 0 ID=Phyra73589;Parent=Phyra73589;rank=5 scaffold_4 . exon 262518 262988 . - . ID=Phyra73589.5;Parent=Phyra73589;constitutive=1;rank=5 scaffold_4 . CDS 263224 263853 . - 0 ID=Phyra73589;Parent=Phyra73589;rank=4 scaffold_4 . exon 263224 263853 . - . ID=Phyra73589.4;Parent=Phyra73589;constitutive=1;rank=4 scaffold_4 . CDS 263908 263967 . - 0 ID=Phyra73589;Parent=Phyra73589;rank=3 scaffold_4 . exon 263908 263967 . - . ID=Phyra73589.3;Parent=Phyra73589;constitutive=1;rank=3 scaffold_4 . CDS 264036 264089 . - 0 ID=Phyra73589;Parent=Phyra73589;rank=2 scaffold_4 . exon 264036 264089 . - . ID=Phyra73589.2;Parent=Phyra73589;constitutive=1;rank=2 scaffold_4 . CDS 264161 264409 . - 0 ID=Phyra73589;Parent=Phyra73589;rank=1 scaffold_4 . exon 264161 264409 . - . ID=Phyra73589.1;Parent=Phyra73589;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 264982 265362 . - . ID=Phyra73590;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000076;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 264982 265362 . - . ID=Phyra73590;Parent=Phyra73590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 264982 265362 . - 0 ID=Phyra73590;Parent=Phyra73590;rank=1 scaffold_4 . exon 264982 265362 . - . ID=Phyra73590.1;Parent=Phyra73590;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 266333 268315 . + . ID=Phyra73591;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000077;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 266333 268315 . + . ID=Phyra73591;Parent=Phyra73591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 266333 268315 . + 0 ID=Phyra73591;Parent=Phyra73591;rank=1 scaffold_4 . exon 266333 268315 . + . ID=Phyra73591.1;Parent=Phyra73591;constitutive=1;rank=1 scaffold_4 . repeat_region 269226 269233 . ? . description=dust scaffold_4 . repeat_region 269385 269393 . ? . description=dust scaffold_4 . repeat_region 270353 270402 . ? . description=dust scaffold_4 ensembl protein_coding_gene 273370 274659 . - . ID=Phyra73592;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000078;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 273370 274659 . - . ID=Phyra73592;Parent=Phyra73592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 273370 273408 . - 0 ID=Phyra73592;Parent=Phyra73592;rank=5 scaffold_4 . exon 273370 273408 . - . ID=Phyra73592.5;Parent=Phyra73592;constitutive=1;rank=5 scaffold_4 . CDS 273467 273676 . - 0 ID=Phyra73592;Parent=Phyra73592;rank=4 scaffold_4 . exon 273467 273676 . - . ID=Phyra73592.4;Parent=Phyra73592;constitutive=1;rank=4 scaffold_4 . CDS 273740 273899 . - 0 ID=Phyra73592;Parent=Phyra73592;rank=3 scaffold_4 . exon 273740 273899 . - . ID=Phyra73592.3;Parent=Phyra73592;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 273972 274118 . - 0 ID=Phyra73592;Parent=Phyra73592;rank=2 scaffold_4 . exon 273972 274118 . - . ID=Phyra73592.2;Parent=Phyra73592;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 274187 274659 . - 0 ID=Phyra73592;Parent=Phyra73592;rank=1 scaffold_4 . exon 274187 274659 . - . ID=Phyra73592.1;Parent=Phyra73592;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . biological_region 279955 279956 0.999 + . logic_name=eponine scaffold_4 . repeat_region 280641 280694 . ? . description=trf scaffold_4 ensembl protein_coding_gene 279860 281862 . + . ID=Phyra73593;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000079;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 279860 281862 . + . ID=Phyra73593;Parent=Phyra73593;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 279860 280184 . + 0 ID=Phyra73593;Parent=Phyra73593;rank=1 scaffold_4 . exon 279860 280184 . + . ID=Phyra73593.1;Parent=Phyra73593;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 280460 280993 . + 0 ID=Phyra73593;Parent=Phyra73593;rank=2 scaffold_4 . exon 280460 280993 . + . ID=Phyra73593.2;Parent=Phyra73593;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 281026 281568 . + 0 ID=Phyra73593;Parent=Phyra73593;rank=3 scaffold_4 . exon 281026 281568 . + . ID=Phyra73593.3;Parent=Phyra73593;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 281846 281862 . + 0 ID=Phyra73593;Parent=Phyra73593;rank=4 scaffold_4 . exon 281846 281862 . + . ID=Phyra73593.4;Parent=Phyra73593;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 ensembl protein_coding_gene 282253 282984 . + . ID=Phyra73594;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000080;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 282253 282984 . + . ID=Phyra73594;Parent=Phyra73594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 282253 282984 . + 0 ID=Phyra73594;Parent=Phyra73594;rank=1 scaffold_4 . exon 282253 282984 . + . ID=Phyra73594.1;Parent=Phyra73594;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 288734 289543 . - . ID=Phyra48385;biotype=protein_coding;external_name=gwEuk.4.24.1;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 288734 289543 . - . ID=Phyra48385;Parent=Phyra48385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 288734 289193 . - 0 ID=Phyra48385;Parent=Phyra48385;rank=2 scaffold_4 . exon 288734 289193 . - . ID=Phyra48385.2;Parent=Phyra48385;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 289257 289543 . - 0 ID=Phyra48385;Parent=Phyra48385;rank=1 scaffold_4 . exon 289257 289543 . - . ID=Phyra48385.1;Parent=Phyra48385;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 290939 291310 . - . ID=Phyra48386;biotype=protein_coding;external_name=gwEuk.4.25.1;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 290939 291310 . - . ID=Phyra48386;Parent=Phyra48386;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 290939 291310 . - 0 ID=Phyra48386;Parent=Phyra48386;rank=1 scaffold_4 . exon 290939 291310 . - . ID=Phyra48386.1;Parent=Phyra48386;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 296436 298349 . + . ID=Phyra73598;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000084;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 296436 298349 . + . ID=Phyra73598;Parent=Phyra73598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 296436 298349 . + 0 ID=Phyra73598;Parent=Phyra73598;rank=1 scaffold_4 . exon 296436 298349 . + . ID=Phyra73598.1;Parent=Phyra73598;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 291641 293521 . + . ID=Phyra93653;biotype=protein_coding;external_name=C_scaffold_4000017;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 291641 293521 . + . ID=Phyra93653;Parent=Phyra93653;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 291641 291893 . + 0 ID=Phyra93653;Parent=Phyra93653;rank=1 scaffold_4 . exon 291641 291893 . + . ID=Phyra93653.1;Parent=Phyra93653;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 291956 292040 . + 0 ID=Phyra93653;Parent=Phyra93653;rank=2 scaffold_4 . exon 291956 292040 . + . ID=Phyra93653.2;Parent=Phyra93653;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_4 . CDS 292106 292462 . + 0 ID=Phyra93653;Parent=Phyra93653;rank=3 scaffold_4 . exon 292106 292462 . + . ID=Phyra93653.3;Parent=Phyra93653;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . CDS 292523 292700 . + 0 ID=Phyra93653;Parent=Phyra93653;rank=4 scaffold_4 . exon 292523 292700 . + . ID=Phyra93653.4;Parent=Phyra93653;constitutive=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 292734 293058 . + 0 ID=Phyra93653;Parent=Phyra93653;rank=5 scaffold_4 . exon 292734 293058 . + . ID=Phyra93653.5;Parent=Phyra93653;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_4 . CDS 293113 293521 . + 0 ID=Phyra93653;Parent=Phyra93653;rank=6 scaffold_4 . exon 293113 293521 . + . ID=Phyra93653.6;Parent=Phyra93653;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_4 ensembl protein_coding_gene 293706 294849 . - . ID=Phyra93654;biotype=protein_coding;external_name=C_scaffold_4000018;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 293706 294849 . - . ID=Phyra93654;Parent=Phyra93654;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 293706 294456 . - 0 ID=Phyra93654;Parent=Phyra93654;rank=2 scaffold_4 . exon 293706 294456 . - . ID=Phyra93654.2;Parent=Phyra93654;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 294515 294849 . - 0 ID=Phyra93654;Parent=Phyra93654;rank=1 scaffold_4 . exon 294515 294849 . - . ID=Phyra93654.1;Parent=Phyra93654;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . biological_region 300323 300325 0.999 - . logic_name=eponine scaffold_4 . biological_region 301286 301290 0.999 + . logic_name=eponine scaffold_4 . biological_region 301827 301828 0.999 - . logic_name=eponine scaffold_4 . repeat_region 304655 304677 . ? . description=trf scaffold_4 . repeat_region 306898 306910 . ? . description=dust scaffold_4 ensembl protein_coding_gene 299260 301017 . + . ID=Phyra73599;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000085;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 299260 301017 . + . ID=Phyra73599;Parent=Phyra73599;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 299260 301017 . + 0 ID=Phyra73599;Parent=Phyra73599;rank=1 scaffold_4 . exon 299260 301017 . + . ID=Phyra73599.1;Parent=Phyra73599;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 301129 302410 . - . ID=Phyra73600;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000086;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 301129 302410 . - . ID=Phyra73600;Parent=Phyra73600;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 301129 301136 . - 0 ID=Phyra73600;Parent=Phyra73600;rank=2 scaffold_4 . exon 301129 301136 . - . ID=Phyra73600.2;Parent=Phyra73600;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 301177 302410 . - 0 ID=Phyra73600;Parent=Phyra73600;rank=1 scaffold_4 . exon 301177 302410 . - . ID=Phyra73600.1;Parent=Phyra73600;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 304358 305734 . - . ID=Phyra73601;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000087;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 304358 305734 . - . ID=Phyra73601;Parent=Phyra73601;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 304358 305734 . - 0 ID=Phyra73601;Parent=Phyra73601;rank=1 scaffold_4 . exon 304358 305734 . - . ID=Phyra73601.1;Parent=Phyra73601;constitutive=1;rank=1 scaffold_4 . biological_region 325882 325882 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 321099 322131 . + . ID=Phyra73602;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000088;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 321099 322131 . + . ID=Phyra73602;Parent=Phyra73602;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 321099 322020 . + 0 ID=Phyra73602;Parent=Phyra73602;rank=1 scaffold_4 . exon 321099 322020 . + . ID=Phyra73602.1;Parent=Phyra73602;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 322061 322131 . + 0 ID=Phyra73602;Parent=Phyra73602;rank=2 scaffold_4 . exon 322061 322131 . + . ID=Phyra73602.2;Parent=Phyra73602;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 ensembl protein_coding_gene 322586 326642 . - . ID=Phyra73603;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000089;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 322586 326642 . - . ID=Phyra73603;Parent=Phyra73603;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 322586 323793 . - 0 ID=Phyra73603;Parent=Phyra73603;rank=5 scaffold_4 . exon 322586 323793 . - . ID=Phyra73603.5;Parent=Phyra73603;constitutive=1;ensembl_phase=1;rank=5 scaffold_4 . CDS 324018 324075 . - 0 ID=Phyra73603;Parent=Phyra73603;rank=4 scaffold_4 . exon 324018 324075 . - . ID=Phyra73603.4;Parent=Phyra73603;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_4 . CDS 324116 324137 . - 0 ID=Phyra73603;Parent=Phyra73603;rank=3 scaffold_4 . exon 324116 324137 . - . ID=Phyra73603.3;Parent=Phyra73603;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 324200 325225 . - 0 ID=Phyra73603;Parent=Phyra73603;rank=2 scaffold_4 . exon 324200 325225 . - . ID=Phyra73603.2;Parent=Phyra73603;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 325477 326642 . - 0 ID=Phyra73603;Parent=Phyra73603;rank=1 scaffold_4 . exon 325477 326642 . - . ID=Phyra73603.1;Parent=Phyra73603;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . repeat_region 333643 333761 . ? . description=trf scaffold_4 . repeat_region 333837 333901 . ? . description=trf scaffold_4 ensembl protein_coding_gene 327681 328535 . - . ID=Phyra73604;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000090;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 327681 328535 . - . ID=Phyra73604;Parent=Phyra73604;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 327681 328535 . - 0 ID=Phyra73604;Parent=Phyra73604;rank=1 scaffold_4 . exon 327681 328535 . - . ID=Phyra73604.1;Parent=Phyra73604;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 329256 330491 . + . ID=Phyra73605;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000091;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 329256 330491 . + . ID=Phyra73605;Parent=Phyra73605;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 329256 330491 . + 0 ID=Phyra73605;Parent=Phyra73605;rank=1 scaffold_4 . exon 329256 330491 . + . ID=Phyra73605.1;Parent=Phyra73605;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 331161 332261 . + . ID=Phyra73606;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000092;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 331161 332261 . + . ID=Phyra73606;Parent=Phyra73606;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 331161 332261 . + 0 ID=Phyra73606;Parent=Phyra73606;rank=1 scaffold_4 . exon 331161 332261 . + . ID=Phyra73606.1;Parent=Phyra73606;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 332916 333947 . + . ID=Phyra73607;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000093;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 332916 333947 . + . ID=Phyra73607;Parent=Phyra73607;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 332916 333947 . + 0 ID=Phyra73607;Parent=Phyra73607;rank=1 scaffold_4 . exon 332916 333947 . + . ID=Phyra73607.1;Parent=Phyra73607;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 334075 336207 . - . ID=Phyra73608;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000094;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 334075 336207 . - . ID=Phyra73608;Parent=Phyra73608;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 334075 334282 . - 0 ID=Phyra73608;Parent=Phyra73608;rank=4 scaffold_4 . exon 334075 334282 . - . ID=Phyra73608.4;Parent=Phyra73608;constitutive=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 334350 334462 . - 0 ID=Phyra73608;Parent=Phyra73608;rank=3 scaffold_4 . exon 334350 334462 . - . ID=Phyra73608.3;Parent=Phyra73608;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_4 . CDS 334543 334926 . - 0 ID=Phyra73608;Parent=Phyra73608;rank=2 scaffold_4 . exon 334543 334926 . - . ID=Phyra73608.2;Parent=Phyra73608;constitutive=1;rank=2 scaffold_4 . CDS 334948 336207 . - 0 ID=Phyra73608;Parent=Phyra73608;rank=1 scaffold_4 . exon 334948 336207 . - . ID=Phyra73608.1;Parent=Phyra73608;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 336639 337892 . + . ID=Phyra73609;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000095;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 336639 337892 . + . ID=Phyra73609;Parent=Phyra73609;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 336639 337892 . + 0 ID=Phyra73609;Parent=Phyra73609;rank=1 scaffold_4 . exon 336639 337892 . + . ID=Phyra73609.1;Parent=Phyra73609;constitutive=1;rank=1 scaffold_4 . biological_region 338207 338208 0.999 - . logic_name=eponine scaffold_4 . biological_region 338260 338264 0.999 - . logic_name=eponine scaffold_4 . biological_region 338307 338309 0.999 - . logic_name=eponine scaffold_4 . biological_region 339760 339763 0.999 + . logic_name=eponine scaffold_4 . biological_region 339794 339804 0.999 - . logic_name=eponine scaffold_4 . biological_region 340495 340496 0.999 + . logic_name=eponine scaffold_4 . biological_region 341712 341714 0.999 + . logic_name=eponine scaffold_4 . repeat_region 342516 342535 . ? . description=dust scaffold_4 . biological_region 343261 343266 0.999 - . logic_name=eponine scaffold_4 . biological_region 345514 345519 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 338102 339151 . + . ID=Phyra73610;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000096;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 338102 339151 . + . ID=Phyra73610;Parent=Phyra73610;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 338102 339151 . + 0 ID=Phyra73610;Parent=Phyra73610;rank=1 scaffold_4 . exon 338102 339151 . + . ID=Phyra73610.1;Parent=Phyra73610;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 339683 342328 . + . ID=Phyra73611;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000097;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 339683 342328 . + . ID=Phyra73611;Parent=Phyra73611;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 339683 342328 . + 0 ID=Phyra73611;Parent=Phyra73611;rank=1 scaffold_4 . exon 339683 342328 . + . ID=Phyra73611.1;Parent=Phyra73611;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 342484 343584 . + . ID=Phyra73612;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000098;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 342484 343584 . + . ID=Phyra73612;Parent=Phyra73612;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 342484 343584 . + 0 ID=Phyra73612;Parent=Phyra73612;rank=1 scaffold_4 . exon 342484 343584 . + . ID=Phyra73612.1;Parent=Phyra73612;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 343995 346008 . - . ID=Phyra73613;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000099;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 343995 346008 . - . ID=Phyra73613;Parent=Phyra73613;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 343995 345364 . - 0 ID=Phyra73613;Parent=Phyra73613;rank=2 scaffold_4 . exon 343995 345364 . - . ID=Phyra73613.2;Parent=Phyra73613;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 345387 346008 . - 0 ID=Phyra73613;Parent=Phyra73613;rank=1 scaffold_4 . exon 345387 346008 . - . ID=Phyra73613.1;Parent=Phyra73613;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 346318 348276 . - . ID=Phyra73614;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000100;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 346318 348276 . - . ID=Phyra73614;Parent=Phyra73614;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 346318 348276 . - 0 ID=Phyra73614;Parent=Phyra73614;rank=1 scaffold_4 . exon 346318 348276 . - . ID=Phyra73614.1;Parent=Phyra73614;constitutive=1;rank=1 scaffold_4 . repeat_region 357428 357452 . ? . description=trf scaffold_4 ensembl protein_coding_gene 348536 350776 . - . ID=Phyra73615;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000101;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 348536 350776 . - . ID=Phyra73615;Parent=Phyra73615;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 348536 350776 . - 0 ID=Phyra73615;Parent=Phyra73615;rank=1 scaffold_4 . exon 348536 350776 . - . ID=Phyra73615.1;Parent=Phyra73615;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 351392 356764 . - . ID=Phyra73616;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000102;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 351392 356764 . - . ID=Phyra73616;Parent=Phyra73616;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 351392 353269 . - 0 ID=Phyra73616;Parent=Phyra73616;rank=2 scaffold_4 . exon 351392 353269 . - . ID=Phyra73616.2;Parent=Phyra73616;constitutive=1;rank=2 scaffold_4 . CDS 353519 356764 . - 0 ID=Phyra73616;Parent=Phyra73616;rank=1 scaffold_4 . exon 353519 356764 . - . ID=Phyra73616.1;Parent=Phyra73616;constitutive=1;rank=1 scaffold_4 . repeat_region 357995 358002 . ? . description=dust scaffold_4 . repeat_region 358558 358571 . ? . description=dust scaffold_4 . repeat_region 360061 360072 . ? . description=dust scaffold_4 . repeat_region 362965 362973 . ? . description=dust scaffold_4 . repeat_region 364764 364771 . ? . description=dust scaffold_4 . biological_region 364791 364797 0.999 + . logic_name=eponine scaffold_4 . repeat_region 365038 365045 . ? . description=dust scaffold_4 . repeat_region 366160 366167 . ? . description=dust scaffold_4 . biological_region 367326 367328 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 359446 359763 . + . ID=Phyra73617;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000103;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 359446 359763 . + . ID=Phyra73617;Parent=Phyra73617;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 359446 359763 . + 0 ID=Phyra73617;Parent=Phyra73617;rank=1 scaffold_4 . exon 359446 359763 . + . ID=Phyra73617.1;Parent=Phyra73617;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 364762 365320 . - . ID=Phyra73618;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000104;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 364762 365320 . - . ID=Phyra73618;Parent=Phyra73618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 364762 365029 . - 0 ID=Phyra73618;Parent=Phyra73618;rank=2 scaffold_4 . exon 364762 365029 . - . ID=Phyra73618.2;Parent=Phyra73618;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 365079 365320 . - 0 ID=Phyra73618;Parent=Phyra73618;rank=1 scaffold_4 . exon 365079 365320 . - . ID=Phyra73618.1;Parent=Phyra73618;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 366525 372789 . + . ID=Phyra73619;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000105;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 366525 372789 . + . ID=Phyra73619;Parent=Phyra73619;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 366525 368227 . + 0 ID=Phyra73619;Parent=Phyra73619;rank=1 scaffold_4 . exon 366525 368227 . + . ID=Phyra73619.1;Parent=Phyra73619;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 368399 370261 . + 0 ID=Phyra73619;Parent=Phyra73619;rank=2 scaffold_4 . CDS 370481 370576 . + 0 ID=Phyra73619;Parent=Phyra73619;rank=3 scaffold_4 . CDS 371105 372736 . + 0 ID=Phyra73619;Parent=Phyra73619;rank=4 scaffold_4 . CDS 372774 372789 . + 0 ID=Phyra73619;Parent=Phyra73619;rank=5 scaffold_4 . exon 368399 370261 . + . ID=Phyra73619.2;Parent=Phyra73619;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . exon 370481 370576 . + . ID=Phyra73619.3;Parent=Phyra73619;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . exon 371105 372736 . + . ID=Phyra73619.4;Parent=Phyra73619;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_4 . exon 372774 372789 . + . ID=Phyra73619.5;Parent=Phyra73619;constitutive=1;ensembl_phase=2;rank=5 scaffold_4 ensembl protein_coding_gene 372893 374683 . - . ID=Phyra93659;biotype=protein_coding;external_name=C_scaffold_4000023;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 372893 374683 . - . ID=Phyra93659;Parent=Phyra93659;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 372893 374240 . - 0 ID=Phyra93659;Parent=Phyra93659;rank=2 scaffold_4 . exon 372893 374240 . - . ID=Phyra93659.2;Parent=Phyra93659;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 374268 374683 . - 0 ID=Phyra93659;Parent=Phyra93659;rank=1 scaffold_4 . exon 374268 374683 . - . ID=Phyra93659.1;Parent=Phyra93659;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . biological_region 378310 378312 0.999 + . logic_name=eponine scaffold_4 . biological_region 385600 385601 0.999 + . logic_name=eponine scaffold_4 . biological_region 386739 386742 0.999 + . logic_name=eponine scaffold_4 . biological_region 387193 387199 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 377773 378929 . + . ID=Phyra73621;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000107;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 377773 378929 . + . ID=Phyra73621;Parent=Phyra73621;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 377773 378754 . + 0 ID=Phyra73621;Parent=Phyra73621;rank=1 scaffold_4 . exon 377773 378754 . + . ID=Phyra73621.1;Parent=Phyra73621;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 378901 378929 . + 0 ID=Phyra73621;Parent=Phyra73621;rank=2 scaffold_4 . exon 378901 378929 . + . ID=Phyra73621.2;Parent=Phyra73621;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 ensembl protein_coding_gene 379093 380574 . - . ID=Phyra73622;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000108;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 379093 380574 . - . ID=Phyra73622;Parent=Phyra73622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 379093 380574 . - 0 ID=Phyra73622;Parent=Phyra73622;rank=1 scaffold_4 . exon 379093 380574 . - . ID=Phyra73622.1;Parent=Phyra73622;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 380935 382398 . - . ID=Phyra73623;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000109;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 380935 382398 . - . ID=Phyra73623;Parent=Phyra73623;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 380935 382398 . - 0 ID=Phyra73623;Parent=Phyra73623;rank=1 scaffold_4 . exon 380935 382398 . - . ID=Phyra73623.1;Parent=Phyra73623;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 382858 383551 . - . ID=Phyra73624;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000110;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 382858 383551 . - . ID=Phyra73624;Parent=Phyra73624;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 382858 382889 . - 0 ID=Phyra73624;Parent=Phyra73624;rank=2 scaffold_4 . exon 382858 382889 . - . ID=Phyra73624.2;Parent=Phyra73624;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 383017 383551 . - 0 ID=Phyra73624;Parent=Phyra73624;rank=1 scaffold_4 . exon 383017 383551 . - . ID=Phyra73624.1;Parent=Phyra73624;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 385124 386927 . - . ID=Phyra73625;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000111;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 385124 386927 . - . ID=Phyra73625;Parent=Phyra73625;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 385124 385172 . - 0 ID=Phyra73625;Parent=Phyra73625;rank=4 scaffold_4 . exon 385124 385172 . - . ID=Phyra73625.4;Parent=Phyra73625;constitutive=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 385205 386446 . - 0 ID=Phyra73625;Parent=Phyra73625;rank=3 scaffold_4 . exon 385205 386446 . - . ID=Phyra73625.3;Parent=Phyra73625;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . CDS 386507 386700 . - 0 ID=Phyra73625;Parent=Phyra73625;rank=2 scaffold_4 . exon 386507 386700 . - . ID=Phyra73625.2;Parent=Phyra73625;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 386811 386927 . - 0 ID=Phyra73625;Parent=Phyra73625;rank=1 scaffold_4 . exon 386811 386927 . - . ID=Phyra73625.1;Parent=Phyra73625;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 387219 388880 . + . ID=Phyra73626;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000112;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 387219 388880 . + . ID=Phyra73626;Parent=Phyra73626;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 387219 388880 . + 0 ID=Phyra73626;Parent=Phyra73626;rank=1 scaffold_4 . exon 387219 388880 . + . ID=Phyra73626.1;Parent=Phyra73626;constitutive=1;rank=1 scaffold_4 . repeat_region 395074 395081 . ? . description=dust scaffold_4 ensembl protein_coding_gene 389196 391031 . - . ID=Phyra73627;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000113;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 389196 391031 . - . ID=Phyra73627;Parent=Phyra73627;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 389196 391031 . - 0 ID=Phyra73627;Parent=Phyra73627;rank=1 scaffold_4 . exon 389196 391031 . - . ID=Phyra73627.1;Parent=Phyra73627;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 392867 394111 . - . ID=Phyra73628;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000114;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 392867 394111 . - . ID=Phyra73628;Parent=Phyra73628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 392867 394111 . - 0 ID=Phyra73628;Parent=Phyra73628;rank=1 scaffold_4 . exon 392867 394111 . - . ID=Phyra73628.1;Parent=Phyra73628;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 395294 397039 . - . ID=Phyra73629;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000115;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 395294 397039 . - . ID=Phyra73629;Parent=Phyra73629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 395294 397039 . - 0 ID=Phyra73629;Parent=Phyra73629;rank=1 scaffold_4 . exon 395294 397039 . - . ID=Phyra73629.1;Parent=Phyra73629;constitutive=1;rank=1 scaffold_4 . biological_region 397537 397545 0.999 + . logic_name=eponine scaffold_4 . biological_region 397617 397622 0.999 + . logic_name=eponine scaffold_4 . biological_region 397685 397692 0.999 - . logic_name=eponine scaffold_4 . biological_region 398144 398145 0.999 + . logic_name=eponine scaffold_4 . biological_region 404663 404667 0.999 + . logic_name=eponine scaffold_4 . biological_region 406835 406838 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 397304 399139 . - . ID=Phyra73630;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000116;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 397304 399139 . - . ID=Phyra73630;Parent=Phyra73630;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 397304 399139 . - 0 ID=Phyra73630;Parent=Phyra73630;rank=1 scaffold_4 . exon 397304 399139 . - . ID=Phyra73630.1;Parent=Phyra73630;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 399369 399973 . + . ID=Phyra73631;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000117;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 399369 399973 . + . ID=Phyra73631;Parent=Phyra73631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 399369 399848 . + 0 ID=Phyra73631;Parent=Phyra73631;rank=1 scaffold_4 . exon 399369 399848 . + . ID=Phyra73631.1;Parent=Phyra73631;constitutive=1;rank=1 scaffold_4 . CDS 399962 399973 . + 0 ID=Phyra73631;Parent=Phyra73631;rank=2 scaffold_4 . exon 399962 399973 . + . ID=Phyra73631.2;Parent=Phyra73631;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 403792 405162 . - . ID=Phyra73632;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000118;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 403792 405162 . - . ID=Phyra73632;Parent=Phyra73632;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 403792 404235 . - 0 ID=Phyra73632;Parent=Phyra73632;rank=3 scaffold_4 . exon 403792 404235 . - . ID=Phyra73632.3;Parent=Phyra73632;constitutive=1;rank=3 scaffold_4 . CDS 404321 404849 . - 0 ID=Phyra73632;Parent=Phyra73632;rank=2 scaffold_4 . exon 404321 404849 . - . ID=Phyra73632.2;Parent=Phyra73632;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 405038 405162 . - 0 ID=Phyra73632;Parent=Phyra73632;rank=1 scaffold_4 . exon 405038 405162 . - . ID=Phyra73632.1;Parent=Phyra73632;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 406173 406838 . + . ID=Phyra73633;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000119;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 406173 406838 . + . ID=Phyra73633;Parent=Phyra73633;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 406173 406838 . + 0 ID=Phyra73633;Parent=Phyra73633;rank=1 scaffold_4 . exon 406173 406838 . + . ID=Phyra73633.1;Parent=Phyra73633;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 402066 403203 . + . ID=Phyra93660;biotype=protein_coding;external_name=C_scaffold_4000024;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 402066 403203 . + . ID=Phyra93660;Parent=Phyra93660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 402066 402165 . + 0 ID=Phyra93660;Parent=Phyra93660;rank=1 scaffold_4 . exon 402066 402165 . + . ID=Phyra93660.1;Parent=Phyra93660;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 402265 402846 . + 0 ID=Phyra93660;Parent=Phyra93660;rank=2 scaffold_4 . exon 402265 402846 . + . ID=Phyra93660.2;Parent=Phyra93660;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 403115 403203 . + 0 ID=Phyra93660;Parent=Phyra93660;rank=3 scaffold_4 . exon 403115 403203 . + . ID=Phyra93660.3;Parent=Phyra93660;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . repeat_region 415954 415967 . ? . description=dust scaffold_4 ensembl protein_coding_gene 407171 408070 . - . ID=Phyra71116;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_4000003;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 407171 408070 . - . ID=Phyra71116;Parent=Phyra71116;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 407171 408070 . - 0 ID=Phyra71116;Parent=Phyra71116;rank=1 scaffold_4 . exon 407171 408070 . - . ID=Phyra71116.1;Parent=Phyra71116;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 413776 415071 . + . ID=Phyra71117;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_4000004;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 413776 415071 . + . ID=Phyra71117;Parent=Phyra71117;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 413776 415071 . + 0 ID=Phyra71117;Parent=Phyra71117;rank=1 scaffold_4 . exon 413776 415071 . + . ID=Phyra71117.1;Parent=Phyra71117;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 416111 416980 . - . ID=Phyra73638;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000124;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 416111 416980 . - . ID=Phyra73638;Parent=Phyra73638;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 416111 416980 . - 0 ID=Phyra73638;Parent=Phyra73638;rank=1 scaffold_4 . exon 416111 416980 . - . ID=Phyra73638.1;Parent=Phyra73638;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 408080 412395 . + . ID=Phyra93663;biotype=protein_coding;external_name=C_scaffold_4000027;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 408080 412395 . + . ID=Phyra93663;Parent=Phyra93663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 408080 408160 . + 0 ID=Phyra93663;Parent=Phyra93663;rank=1 scaffold_4 . exon 408080 408160 . + . ID=Phyra93663.1;Parent=Phyra93663;constitutive=1;rank=1 scaffold_4 . CDS 408393 408508 . + 0 ID=Phyra93663;Parent=Phyra93663;rank=2 scaffold_4 . exon 408393 408508 . + . ID=Phyra93663.2;Parent=Phyra93663;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 408700 409005 . + 0 ID=Phyra93663;Parent=Phyra93663;rank=3 scaffold_4 . exon 408700 409005 . + . ID=Phyra93663.3;Parent=Phyra93663;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . CDS 409048 409451 . + 0 ID=Phyra93663;Parent=Phyra93663;rank=4 scaffold_4 . exon 409048 409451 . + . ID=Phyra93663.4;Parent=Phyra93663;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 409482 409549 . + 0 ID=Phyra93663;Parent=Phyra93663;rank=5 scaffold_4 . exon 409482 409549 . + . ID=Phyra93663.5;Parent=Phyra93663;constitutive=1;ensembl_phase=1;rank=5 scaffold_4 . CDS 409715 409939 . + 0 ID=Phyra93663;Parent=Phyra93663;rank=6 scaffold_4 . exon 409715 409939 . + . ID=Phyra93663.6;Parent=Phyra93663;constitutive=1;rank=6 scaffold_4 . CDS 410117 410300 . + 0 ID=Phyra93663;Parent=Phyra93663;rank=7 scaffold_4 . exon 410117 410300 . + . ID=Phyra93663.7;Parent=Phyra93663;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_4 . CDS 410346 410599 . + 0 ID=Phyra93663;Parent=Phyra93663;rank=8 scaffold_4 . exon 410346 410599 . + . ID=Phyra93663.8;Parent=Phyra93663;constitutive=1;ensembl_phase=1;rank=8 scaffold_4 . CDS 410648 410971 . + 0 ID=Phyra93663;Parent=Phyra93663;rank=9 scaffold_4 . exon 410648 410971 . + . ID=Phyra93663.9;Parent=Phyra93663;constitutive=1;rank=9 scaffold_4 . CDS 411041 411127 . + 0 ID=Phyra93663;Parent=Phyra93663;rank=10 scaffold_4 . exon 411041 411127 . + . ID=Phyra93663.10;Parent=Phyra93663;constitutive=1;rank=10 scaffold_4 . CDS 411167 411578 . + 0 ID=Phyra93663;Parent=Phyra93663;rank=11 scaffold_4 . exon 411167 411578 . + . ID=Phyra93663.11;Parent=Phyra93663;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_4 . CDS 411642 411758 . + 0 ID=Phyra93663;Parent=Phyra93663;rank=12 scaffold_4 . exon 411642 411758 . + . ID=Phyra93663.12;Parent=Phyra93663;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_4 . CDS 412002 412178 . + 0 ID=Phyra93663;Parent=Phyra93663;rank=13 scaffold_4 . exon 412002 412178 . + . ID=Phyra93663.13;Parent=Phyra93663;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_4 . CDS 412388 412395 . + 0 ID=Phyra93663;Parent=Phyra93663;rank=14 scaffold_4 . exon 412388 412395 . + . ID=Phyra93663.14;Parent=Phyra93663;constitutive=1;ensembl_phase=1;rank=14 scaffold_4 . biological_region 417291 417292 0.999 + . logic_name=eponine scaffold_4 . repeat_region 418367 418421 . ? . description=trf scaffold_4 . biological_region 418448 418451 0.999 + . logic_name=eponine scaffold_4 . biological_region 422831 422833 0.999 + . logic_name=eponine scaffold_4 . biological_region 423356 423359 0.999 + . logic_name=eponine scaffold_4 . biological_region 424384 424387 0.999 - . logic_name=eponine scaffold_4 . biological_region 424742 424744 0.999 + . logic_name=eponine scaffold_4 . biological_region 424865 424872 0.999 - . logic_name=eponine scaffold_4 . biological_region 424896 424902 0.999 - . logic_name=eponine scaffold_4 . biological_region 424972 424974 0.999 - . logic_name=eponine scaffold_4 . biological_region 425045 425050 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 417325 420183 . + . ID=Phyra73639;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000125;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 417325 420183 . + . ID=Phyra73639;Parent=Phyra73639;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 417325 420183 . + 0 ID=Phyra73639;Parent=Phyra73639;rank=1 scaffold_4 . exon 417325 420183 . + . ID=Phyra73639.1;Parent=Phyra73639;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 420347 424776 . - . ID=Phyra73640;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000126;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 420347 424776 . - . ID=Phyra73640;Parent=Phyra73640;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 420347 424695 . - 0 ID=Phyra73640;Parent=Phyra73640;rank=2 scaffold_4 . exon 420347 424695 . - . ID=Phyra73640.2;Parent=Phyra73640;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 424752 424776 . - 0 ID=Phyra73640;Parent=Phyra73640;rank=1 scaffold_4 . exon 424752 424776 . - . ID=Phyra73640.1;Parent=Phyra73640;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 425364 425909 . + . ID=Phyra73641;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000127;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 425364 425909 . + . ID=Phyra73641;Parent=Phyra73641;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 425364 425909 . + 0 ID=Phyra73641;Parent=Phyra73641;rank=1 scaffold_4 . exon 425364 425909 . + . ID=Phyra73641.1;Parent=Phyra73641;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 426456 428473 . + . ID=Phyra73642;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000128;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 426456 428473 . + . ID=Phyra73642;Parent=Phyra73642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 426456 427339 . + 0 ID=Phyra73642;Parent=Phyra73642;rank=1 scaffold_4 . exon 426456 427339 . + . ID=Phyra73642.1;Parent=Phyra73642;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 427594 428473 . + 0 ID=Phyra73642;Parent=Phyra73642;rank=2 scaffold_4 ensembl protein_coding_gene 429397 430851 . + . ID=Phyra71118;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_4000005;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 429397 430851 . + . ID=Phyra71118;Parent=Phyra71118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 429397 430851 . + 0 ID=Phyra71118;Parent=Phyra71118;rank=1 scaffold_4 . exon 429397 430851 . + . ID=Phyra71118.1;Parent=Phyra71118;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 432102 433085 . - . ID=Phyra71119;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_4000006;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 432102 433085 . - . ID=Phyra71119;Parent=Phyra71119;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 432102 433085 . - 0 ID=Phyra71119;Parent=Phyra71119;rank=1 scaffold_4 . exon 432102 433085 . - . ID=Phyra71119.1;Parent=Phyra71119;constitutive=1;rank=1 scaffold_4 . exon 427594 428473 . + . ID=Phyra73642.2;Parent=Phyra73642;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 ensembl protein_coding_gene 431020 431941 . + . ID=Phyra73644;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000130;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 431020 431941 . + . ID=Phyra73644;Parent=Phyra73644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 431020 431941 . + 0 ID=Phyra73644;Parent=Phyra73644;rank=1 scaffold_4 . exon 431020 431941 . + . ID=Phyra73644.1;Parent=Phyra73644;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 433225 434655 . + . ID=Phyra73646;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000132;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 433225 434655 . + . ID=Phyra73646;Parent=Phyra73646;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 433225 434655 . + 0 ID=Phyra73646;Parent=Phyra73646;rank=1 scaffold_4 . exon 433225 434655 . + . ID=Phyra73646.1;Parent=Phyra73646;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 434906 437683 . - . ID=Phyra73647;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000133;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 434906 437683 . - . ID=Phyra73647;Parent=Phyra73647;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 434906 435235 . - 0 ID=Phyra73647;Parent=Phyra73647;rank=5 scaffold_4 . exon 434906 435235 . - . ID=Phyra73647.5;Parent=Phyra73647;constitutive=1;rank=5 scaffold_4 . CDS 435310 435370 . - 0 ID=Phyra73647;Parent=Phyra73647;rank=4 scaffold_4 . exon 435310 435370 . - . ID=Phyra73647.4;Parent=Phyra73647;constitutive=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 435434 435594 . - 0 ID=Phyra73647;Parent=Phyra73647;rank=3 scaffold_4 . exon 435434 435594 . - . ID=Phyra73647.3;Parent=Phyra73647;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_4 . CDS 435674 435848 . - 0 ID=Phyra73647;Parent=Phyra73647;rank=2 scaffold_4 . exon 435674 435848 . - . ID=Phyra73647.2;Parent=Phyra73647;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 435984 437683 . - 0 ID=Phyra73647;Parent=Phyra73647;rank=1 scaffold_4 . exon 435984 437683 . - . ID=Phyra73647.1;Parent=Phyra73647;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . repeat_region 439340 439377 . ? . description=trf scaffold_4 . repeat_region 439349 439377 . ? . description=trf scaffold_4 . biological_region 439428 439430 0.999 + . logic_name=eponine scaffold_4 . biological_region 439851 439853 0.999 + . logic_name=eponine scaffold_4 . repeat_region 440445 440799 . ? . description=trf scaffold_4 . repeat_region 440483 440520 . ? . description=trf scaffold_4 . repeat_region 440660 440697 . ? . description=trf scaffold_4 . biological_region 441496 441498 0.999 - . logic_name=eponine scaffold_4 . biological_region 441919 441921 0.999 - . logic_name=eponine scaffold_4 . repeat_region 441971 442008 . ? . description=trf scaffold_4 . repeat_region 443464 443471 . ? . description=dust scaffold_4 . biological_region 444466 444469 0.999 - . logic_name=eponine scaffold_4 . biological_region 445141 445146 0.999 + . logic_name=eponine scaffold_4 . biological_region 445169 445171 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 438057 438438 . + . ID=Phyra48414;biotype=protein_coding;external_name=gwEuk.4.53.1;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 438057 438438 . + . ID=Phyra48414;Parent=Phyra48414;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 438057 438112 . + 0 ID=Phyra48414;Parent=Phyra48414;rank=1 scaffold_4 . exon 438057 438112 . + . ID=Phyra48414.1;Parent=Phyra48414;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 438174 438438 . + 0 ID=Phyra48414;Parent=Phyra48414;rank=2 scaffold_4 . exon 438174 438438 . + . ID=Phyra48414.2;Parent=Phyra48414;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 ensembl protein_coding_gene 444320 445423 . - . ID=Phyra48417;biotype=protein_coding;external_name=gwEuk.4.56.1;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 444320 445423 . - . ID=Phyra48417;Parent=Phyra48417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 444320 445423 . - 0 ID=Phyra48417;Parent=Phyra48417;rank=1 scaffold_4 . exon 444320 445423 . - . ID=Phyra48417.1;Parent=Phyra48417;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 439156 439578 . - . ID=Phyra73649;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000135;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 439156 439578 . - . ID=Phyra73649;Parent=Phyra73649;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 439156 439578 . - 0 ID=Phyra73649;Parent=Phyra73649;rank=1 scaffold_4 . exon 439156 439578 . - . ID=Phyra73649.1;Parent=Phyra73649;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 441770 442192 . + . ID=Phyra73650;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000136;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 441770 442192 . + . ID=Phyra73650;Parent=Phyra73650;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 441770 442192 . + 0 ID=Phyra73650;Parent=Phyra73650;rank=1 scaffold_4 . exon 441770 442192 . + . ID=Phyra73650.1;Parent=Phyra73650;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 445722 447035 . + . ID=Phyra73652;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000138;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 445722 447035 . + . ID=Phyra73652;Parent=Phyra73652;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 445722 445994 . + 0 ID=Phyra73652;Parent=Phyra73652;rank=1 scaffold_4 . exon 445722 445994 . + . ID=Phyra73652.1;Parent=Phyra73652;constitutive=1;rank=1 scaffold_4 . CDS 446069 446485 . + 0 ID=Phyra73652;Parent=Phyra73652;rank=2 scaffold_4 . exon 446069 446485 . + . ID=Phyra73652.2;Parent=Phyra73652;constitutive=1;rank=2 scaffold_4 . CDS 446744 446851 . + 0 ID=Phyra73652;Parent=Phyra73652;rank=3 scaffold_4 . exon 446744 446851 . + . ID=Phyra73652.3;Parent=Phyra73652;constitutive=1;rank=3 scaffold_4 . CDS 446910 447035 . + 0 ID=Phyra73652;Parent=Phyra73652;rank=4 scaffold_4 ensembl protein_coding_gene 453573 455000 . + . ID=Phyra71121;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_4000008;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 453573 455000 . + . ID=Phyra71121;Parent=Phyra71121;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 453573 455000 . + 0 ID=Phyra71121;Parent=Phyra71121;rank=1 scaffold_4 . exon 453573 455000 . + . ID=Phyra71121.1;Parent=Phyra71121;constitutive=1;rank=1 scaffold_4 . exon 446910 447035 . + . ID=Phyra73652.4;Parent=Phyra73652;constitutive=1;rank=4 scaffold_4 ensembl protein_coding_gene 451751 453178 . + . ID=Phyra73653;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000139;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 451751 453178 . + . ID=Phyra73653;Parent=Phyra73653;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 451751 453178 . + 0 ID=Phyra73653;Parent=Phyra73653;rank=1 scaffold_4 . exon 451751 453178 . + . ID=Phyra73653.1;Parent=Phyra73653;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 455350 456405 . + . ID=Phyra73655;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000141;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 455350 456405 . + . ID=Phyra73655;Parent=Phyra73655;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 455350 456405 . + 0 ID=Phyra73655;Parent=Phyra73655;rank=1 scaffold_4 . exon 455350 456405 . + . ID=Phyra73655.1;Parent=Phyra73655;constitutive=1;rank=1 scaffold_4 . repeat_region 457988 458007 . ? . description=trf scaffold_4 . biological_region 458714 458717 0.999 + . logic_name=eponine scaffold_4 . biological_region 458886 458888 0.999 + . logic_name=eponine scaffold_4 . repeat_region 459228 459252 . ? . description=dust scaffold_4 . biological_region 460942 460943 0.999 - . logic_name=eponine scaffold_4 . biological_region 461827 461831 0.999 - . logic_name=eponine scaffold_4 . biological_region 462585 462588 0.999 - . logic_name=eponine scaffold_4 . biological_region 462702 462704 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 458440 458871 . + . ID=Phyra48430;biotype=protein_coding;external_name=gwEuk.4.69.1;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 458440 458871 . + . ID=Phyra48430;Parent=Phyra48430;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 458440 458871 . + 0 ID=Phyra48430;Parent=Phyra48430;rank=1 scaffold_4 . exon 458440 458871 . + . ID=Phyra48430.1;Parent=Phyra48430;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 462515 464416 . + . ID=Phyra71123;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_4000010;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 462515 464416 . + . ID=Phyra71123;Parent=Phyra71123;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 462515 464416 . + 0 ID=Phyra71123;Parent=Phyra71123;rank=1 scaffold_4 . exon 462515 464416 . + . ID=Phyra71123.1;Parent=Phyra71123;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 456738 458160 . - . ID=Phyra73656;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000142;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 456738 458160 . - . ID=Phyra73656;Parent=Phyra73656;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 456738 456866 . - 0 ID=Phyra73656;Parent=Phyra73656;rank=6 scaffold_4 . exon 456738 456866 . - . ID=Phyra73656.6;Parent=Phyra73656;constitutive=1;rank=6 scaffold_4 . CDS 456950 457069 . - 0 ID=Phyra73656;Parent=Phyra73656;rank=5 scaffold_4 . exon 456950 457069 . - . ID=Phyra73656.5;Parent=Phyra73656;constitutive=1;rank=5 scaffold_4 . CDS 457253 457299 . - 0 ID=Phyra73656;Parent=Phyra73656;rank=4 scaffold_4 . exon 457253 457299 . - . ID=Phyra73656.4;Parent=Phyra73656;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 . CDS 457381 457534 . - 0 ID=Phyra73656;Parent=Phyra73656;rank=3 scaffold_4 . exon 457381 457534 . - . ID=Phyra73656.3;Parent=Phyra73656;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_4 . CDS 457606 457756 . - 0 ID=Phyra73656;Parent=Phyra73656;rank=2 scaffold_4 . exon 457606 457756 . - . ID=Phyra73656.2;Parent=Phyra73656;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 457880 458160 . - 0 ID=Phyra73656;Parent=Phyra73656;rank=1 scaffold_4 . exon 457880 458160 . - . ID=Phyra73656.1;Parent=Phyra73656;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 459440 462112 . - . ID=Phyra73658;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000144;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 459440 462112 . - . ID=Phyra73658;Parent=Phyra73658;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 459440 459546 . - 0 ID=Phyra73658;Parent=Phyra73658;rank=6 scaffold_4 . exon 459440 459546 . - . ID=Phyra73658.6;Parent=Phyra73658;constitutive=1;ensembl_phase=1;rank=6 scaffold_4 . CDS 459633 459710 . - 0 ID=Phyra73658;Parent=Phyra73658;rank=5 scaffold_4 . exon 459633 459710 . - . ID=Phyra73658.5;Parent=Phyra73658;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_4 . CDS 459774 460627 . - 0 ID=Phyra73658;Parent=Phyra73658;rank=4 scaffold_4 . exon 459774 460627 . - . ID=Phyra73658.4;Parent=Phyra73658;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 460686 461289 . - 0 ID=Phyra73658;Parent=Phyra73658;rank=3 scaffold_4 . exon 460686 461289 . - . ID=Phyra73658.3;Parent=Phyra73658;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_4 . CDS 461642 461885 . - 0 ID=Phyra73658;Parent=Phyra73658;rank=2 scaffold_4 . exon 461642 461885 . - . ID=Phyra73658.2;Parent=Phyra73658;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 462080 462112 . - 0 ID=Phyra73658;Parent=Phyra73658;rank=1 scaffold_4 . exon 462080 462112 . - . ID=Phyra73658.1;Parent=Phyra73658;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 465606 467852 . + . ID=Phyra73660;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000146;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 465606 467852 . + . ID=Phyra73660;Parent=Phyra73660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 465606 465721 . + 0 ID=Phyra73660;Parent=Phyra73660;rank=1 scaffold_4 . exon 465606 465721 . + . ID=Phyra73660.1;Parent=Phyra73660;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 465791 466204 . + 0 ID=Phyra73660;Parent=Phyra73660;rank=2 scaffold_4 . exon 465791 466204 . + . ID=Phyra73660.2;Parent=Phyra73660;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 466294 466446 . + 0 ID=Phyra73660;Parent=Phyra73660;rank=3 scaffold_4 . exon 466294 466446 . + . ID=Phyra73660.3;Parent=Phyra73660;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . CDS 466751 466766 . + 0 ID=Phyra73660;Parent=Phyra73660;rank=4 scaffold_4 . CDS 467011 467073 . + 0 ID=Phyra73660;Parent=Phyra73660;rank=5 scaffold_4 . CDS 467413 467544 . + 0 ID=Phyra73660;Parent=Phyra73660;rank=6 scaffold_4 . CDS 467607 467852 . + 0 ID=Phyra73660;Parent=Phyra73660;rank=7 scaffold_4 . exon 466751 466766 . + . ID=Phyra73660.4;Parent=Phyra73660;constitutive=1;ensembl_phase=2;rank=4 scaffold_4 . exon 467011 467073 . + . ID=Phyra73660.5;Parent=Phyra73660;constitutive=1;rank=5 scaffold_4 . exon 467413 467544 . + . ID=Phyra73660.6;Parent=Phyra73660;constitutive=1;rank=6 scaffold_4 . exon 467607 467852 . + . ID=Phyra73660.7;Parent=Phyra73660;constitutive=1;rank=7 scaffold_4 ensembl protein_coding_gene 470581 473235 . + . ID=Phyra73661;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000147;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 470581 473235 . + . ID=Phyra73661;Parent=Phyra73661;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 470581 473235 . + 0 ID=Phyra73661;Parent=Phyra73661;rank=1 scaffold_4 . exon 470581 473235 . + . ID=Phyra73661.1;Parent=Phyra73661;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 473383 475926 . - . ID=Phyra73662;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000148;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 473383 475926 . - . ID=Phyra73662;Parent=Phyra73662;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 473383 473489 . - 0 ID=Phyra73662;Parent=Phyra73662;rank=3 scaffold_4 . exon 473383 473489 . - . ID=Phyra73662.3;Parent=Phyra73662;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 473522 474264 . - 0 ID=Phyra73662;Parent=Phyra73662;rank=2 scaffold_4 . exon 473522 474264 . - . ID=Phyra73662.2;Parent=Phyra73662;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 474365 475926 . - 0 ID=Phyra73662;Parent=Phyra73662;rank=1 scaffold_4 . exon 474365 475926 . - . ID=Phyra73662.1;Parent=Phyra73662;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . biological_region 481343 481344 0.999 + . logic_name=eponine scaffold_4 . biological_region 481432 481435 0.999 + . logic_name=eponine scaffold_4 . biological_region 481489 481495 0.999 - . logic_name=eponine scaffold_4 . biological_region 481524 481527 0.999 - . logic_name=eponine scaffold_4 . biological_region 481714 481717 0.999 - . logic_name=eponine scaffold_4 . biological_region 481767 481774 0.999 + . logic_name=eponine scaffold_4 . biological_region 481848 481852 0.999 + . logic_name=eponine scaffold_4 . biological_region 481915 481924 0.999 - . logic_name=eponine scaffold_4 . biological_region 481944 481948 0.999 - . logic_name=eponine scaffold_4 . biological_region 481960 481967 0.999 - . logic_name=eponine scaffold_4 . biological_region 481973 481978 0.999 + . logic_name=eponine scaffold_4 . biological_region 481985 481988 0.999 - . logic_name=eponine scaffold_4 . biological_region 481998 482006 0.999 + . logic_name=eponine scaffold_4 . repeat_region 482455 482478 . ? . description=trf scaffold_4 . biological_region 484149 484155 0.999 + . logic_name=eponine scaffold_4 . biological_region 484208 484213 0.999 - . logic_name=eponine scaffold_4 . biological_region 484300 484301 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 476961 478855 . - . ID=Phyra73663;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000149;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 476961 478855 . - . ID=Phyra73663;Parent=Phyra73663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 476961 478315 . - 0 ID=Phyra73663;Parent=Phyra73663;rank=3 scaffold_4 . exon 476961 478315 . - . ID=Phyra73663.3;Parent=Phyra73663;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 478383 478622 . - 0 ID=Phyra73663;Parent=Phyra73663;rank=2 scaffold_4 . exon 478383 478622 . - . ID=Phyra73663.2;Parent=Phyra73663;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 478816 478855 . - 0 ID=Phyra73663;Parent=Phyra73663;rank=1 scaffold_4 . exon 478816 478855 . - . ID=Phyra73663.1;Parent=Phyra73663;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 481003 481842 . - . ID=Phyra73664;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000150;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 481003 481842 . - . ID=Phyra73664;Parent=Phyra73664;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 481003 481842 . - 0 ID=Phyra73664;Parent=Phyra73664;rank=1 scaffold_4 . exon 481003 481842 . - . ID=Phyra73664.1;Parent=Phyra73664;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 483795 484640 . + . ID=Phyra73665;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000151;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 483795 484640 . + . ID=Phyra73665;Parent=Phyra73665;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 483795 484640 . + 0 ID=Phyra73665;Parent=Phyra73665;rank=1 scaffold_4 . exon 483795 484640 . + . ID=Phyra73665.1;Parent=Phyra73665;constitutive=1;rank=1 scaffold_4 . repeat_region 493351 494191 . ? . description=dust scaffold_4 . repeat_region 495490 496615 . ? . description=dust scaffold_4 ensembl protein_coding_gene 486943 487773 . + . ID=Phyra73666;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000152;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 486943 487773 . + . ID=Phyra73666;Parent=Phyra73666;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 486943 487773 . + 0 ID=Phyra73666;Parent=Phyra73666;rank=1 scaffold_4 . exon 486943 487773 . + . ID=Phyra73666.1;Parent=Phyra73666;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 488550 489425 . + . ID=Phyra73667;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000153;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 488550 489425 . + . ID=Phyra73667;Parent=Phyra73667;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 488550 489425 . + 0 ID=Phyra73667;Parent=Phyra73667;rank=1 scaffold_4 . exon 488550 489425 . + . ID=Phyra73667.1;Parent=Phyra73667;constitutive=1;rank=1 scaffold_4 . biological_region 498719 498723 0.999 + . logic_name=eponine scaffold_4 . biological_region 500094 500100 0.999 + . logic_name=eponine scaffold_4 . biological_region 500175 500178 0.999 - . logic_name=eponine scaffold_4 . biological_region 500200 500204 0.999 - . logic_name=eponine scaffold_4 . biological_region 501210 501211 0.999 - . logic_name=eponine scaffold_4 . biological_region 502075 502075 0.999 - . logic_name=eponine scaffold_4 . biological_region 504661 504666 0.999 - . logic_name=eponine scaffold_4 . biological_region 505162 505163 0.999 + . logic_name=eponine scaffold_4 . biological_region 505178 505184 0.999 - . logic_name=eponine scaffold_4 . biological_region 505198 505202 0.999 - . logic_name=eponine scaffold_4 . biological_region 505252 505254 0.999 - . logic_name=eponine scaffold_4 . biological_region 505307 505308 0.999 + . logic_name=eponine scaffold_4 . biological_region 505322 505323 0.999 - . logic_name=eponine scaffold_4 . biological_region 505340 505347 0.999 - . logic_name=eponine scaffold_4 . biological_region 505350 505360 0.999 + . logic_name=eponine scaffold_4 . biological_region 505367 505372 0.999 - . logic_name=eponine scaffold_4 . biological_region 505375 505380 0.999 + . logic_name=eponine scaffold_4 . biological_region 505396 505403 0.999 + . logic_name=eponine scaffold_4 . biological_region 505492 505499 0.999 - . logic_name=eponine scaffold_4 . biological_region 505513 505518 0.999 - . logic_name=eponine scaffold_4 . biological_region 505569 505572 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 497110 497475 . - . ID=Phyra48444;biotype=protein_coding;external_name=gwEuk.4.83.1;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 497110 497475 . - . ID=Phyra48444;Parent=Phyra48444;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 497110 497475 . - 0 ID=Phyra48444;Parent=Phyra48444;rank=1 scaffold_4 . exon 497110 497475 . - . ID=Phyra48444.1;Parent=Phyra48444;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 497569 501611 . - . ID=Phyra73669;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000155;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 497569 501611 . - . ID=Phyra73669;Parent=Phyra73669;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 497569 499796 . - 0 ID=Phyra73669;Parent=Phyra73669;rank=5 scaffold_4 . exon 497569 499796 . - . ID=Phyra73669.5;Parent=Phyra73669;constitutive=1;ensembl_phase=1;rank=5 scaffold_4 . CDS 499833 499891 . - 0 ID=Phyra73669;Parent=Phyra73669;rank=4 scaffold_4 . exon 499833 499891 . - . ID=Phyra73669.4;Parent=Phyra73669;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 499927 500266 . - 0 ID=Phyra73669;Parent=Phyra73669;rank=3 scaffold_4 . exon 499927 500266 . - . ID=Phyra73669.3;Parent=Phyra73669;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_4 . CDS 500372 501148 . - 0 ID=Phyra73669;Parent=Phyra73669;rank=2 scaffold_4 . exon 500372 501148 . - . ID=Phyra73669.2;Parent=Phyra73669;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 501212 501611 . - 0 ID=Phyra73669;Parent=Phyra73669;rank=1 scaffold_4 . exon 501212 501611 . - . ID=Phyra73669.1;Parent=Phyra73669;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 503582 504931 . - . ID=Phyra93670;biotype=protein_coding;external_name=C_scaffold_4000034;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 503582 504931 . - . ID=Phyra93670;Parent=Phyra93670;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 503582 504931 . - 0 ID=Phyra93670;Parent=Phyra93670;rank=1 scaffold_4 . exon 503582 504931 . - . ID=Phyra93670.1;Parent=Phyra93670;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 505122 510997 . + . ID=Phyra93673;biotype=protein_coding;external_name=C_scaffold_4000037;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 505122 510997 . + . ID=Phyra93673;Parent=Phyra93673;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 505122 506115 . + 0 ID=Phyra93673;Parent=Phyra93673;rank=1 scaffold_4 . exon 505122 506115 . + . ID=Phyra93673.1;Parent=Phyra93673;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 506451 506573 . + 0 ID=Phyra93673;Parent=Phyra93673;rank=2 scaffold_4 . CDS 506997 507140 . + 0 ID=Phyra93673;Parent=Phyra93673;rank=3 scaffold_4 . CDS 507351 507445 . + 0 ID=Phyra93673;Parent=Phyra93673;rank=4 scaffold_4 . CDS 507704 507800 . + 0 ID=Phyra93673;Parent=Phyra93673;rank=5 scaffold_4 . CDS 507876 507985 . + 0 ID=Phyra93673;Parent=Phyra93673;rank=6 scaffold_4 . CDS 508010 508149 . + 0 ID=Phyra93673;Parent=Phyra93673;rank=7 scaffold_4 . CDS 508342 508613 . + 0 ID=Phyra93673;Parent=Phyra93673;rank=8 scaffold_4 . CDS 508692 509039 . + 0 ID=Phyra93673;Parent=Phyra93673;rank=9 scaffold_4 . CDS 509416 509523 . + 0 ID=Phyra93673;Parent=Phyra93673;rank=10 scaffold_4 . CDS 509955 510431 . + 0 ID=Phyra93673;Parent=Phyra93673;rank=11 scaffold_4 . CDS 510459 510513 . + 0 ID=Phyra93673;Parent=Phyra93673;rank=12 scaffold_4 . CDS 510568 510997 . + 0 ID=Phyra93673;Parent=Phyra93673;rank=13 scaffold_4 ensembl protein_coding_gene 511972 512945 . - . ID=Phyra48450;biotype=protein_coding;external_name=gwEuk.4.89.1;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 511972 512945 . - . ID=Phyra48450;Parent=Phyra48450;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 511972 512244 . - 0 ID=Phyra48450;Parent=Phyra48450;rank=3 scaffold_4 . exon 511972 512244 . - . ID=Phyra48450.3;Parent=Phyra48450;constitutive=1;rank=3 scaffold_4 . CDS 512307 512549 . - 0 ID=Phyra48450;Parent=Phyra48450;rank=2 scaffold_4 . exon 512307 512549 . - . ID=Phyra48450.2;Parent=Phyra48450;constitutive=1;rank=2 scaffold_4 . CDS 512592 512945 . - 0 ID=Phyra48450;Parent=Phyra48450;rank=1 scaffold_4 . exon 512592 512945 . - . ID=Phyra48450.1;Parent=Phyra48450;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 513282 514157 . - . ID=Phyra73674;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000160;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 513282 514157 . - . ID=Phyra73674;Parent=Phyra73674;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 513282 514157 . - 0 ID=Phyra73674;Parent=Phyra73674;rank=1 scaffold_4 . exon 513282 514157 . - . ID=Phyra73674.1;Parent=Phyra73674;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 515279 518038 . + . ID=Phyra73675;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000161;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 515279 518038 . + . ID=Phyra73675;Parent=Phyra73675;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 515279 518038 . + 0 ID=Phyra73675;Parent=Phyra73675;rank=1 scaffold_4 . exon 515279 518038 . + . ID=Phyra73675.1;Parent=Phyra73675;constitutive=1;rank=1 scaffold_4 . exon 506451 506573 . + . ID=Phyra93673.2;Parent=Phyra93673;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . exon 506997 507140 . + . ID=Phyra93673.3;Parent=Phyra93673;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_4 . exon 507351 507445 . + . ID=Phyra93673.4;Parent=Phyra93673;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 . exon 507704 507800 . + . ID=Phyra93673.5;Parent=Phyra93673;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_4 . exon 507876 507985 . + . ID=Phyra93673.6;Parent=Phyra93673;constitutive=1;ensembl_phase=1;rank=6 scaffold_4 . exon 508010 508149 . + . ID=Phyra93673.7;Parent=Phyra93673;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_4 . exon 508342 508613 . + . ID=Phyra93673.8;Parent=Phyra93673;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_4 . exon 508692 509039 . + . ID=Phyra93673.9;Parent=Phyra93673;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_4 . exon 509416 509523 . + . ID=Phyra93673.10;Parent=Phyra93673;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_4 . exon 509955 510431 . + . ID=Phyra93673.11;Parent=Phyra93673;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_4 . exon 510459 510513 . + . ID=Phyra93673.12;Parent=Phyra93673;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_4 . exon 510568 510997 . + . ID=Phyra93673.13;Parent=Phyra93673;constitutive=1;ensembl_phase=2;rank=13 scaffold_4 . repeat_region 520178 520210 . ? . description=dust scaffold_4 . repeat_region 520213 520233 . ? . description=trf scaffold_4 . repeat_region 520213 520233 . ? . description=dust scaffold_4 . repeat_region 520239 520288 . ? . description=dust scaffold_4 . biological_region 522047 522049 0.999 - . logic_name=eponine scaffold_4 . repeat_region 525150 525188 . ? . description=trf scaffold_4 . biological_region 526170 526174 0.999 + . logic_name=eponine scaffold_4 . biological_region 526192 526194 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 518171 519122 . - . ID=Phyra73676;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000162;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 518171 519122 . - . ID=Phyra73676;Parent=Phyra73676;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 518171 518811 . - 0 ID=Phyra73676;Parent=Phyra73676;rank=2 scaffold_4 . exon 518171 518811 . - . ID=Phyra73676.2;Parent=Phyra73676;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 518930 519122 . - 0 ID=Phyra73676;Parent=Phyra73676;rank=1 scaffold_4 . exon 518930 519122 . - . ID=Phyra73676.1;Parent=Phyra73676;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 520598 521479 . + . ID=Phyra73677;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000163;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 520598 521479 . + . ID=Phyra73677;Parent=Phyra73677;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 520598 521479 . + 0 ID=Phyra73677;Parent=Phyra73677;rank=1 scaffold_4 . exon 520598 521479 . + . ID=Phyra73677.1;Parent=Phyra73677;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 524066 527365 . - . ID=Phyra73678;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000164;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 524066 527365 . - . ID=Phyra73678;Parent=Phyra73678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 524066 527365 . - 0 ID=Phyra73678;Parent=Phyra73678;rank=1 scaffold_4 . exon 524066 527365 . - . ID=Phyra73678.1;Parent=Phyra73678;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 533825 535090 . + . ID=Phyra73679;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000165;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 533825 535090 . + . ID=Phyra73679;Parent=Phyra73679;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 533825 535090 . + 0 ID=Phyra73679;Parent=Phyra73679;rank=1 scaffold_4 . exon 533825 535090 . + . ID=Phyra73679.1;Parent=Phyra73679;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 535244 536294 . - . ID=Phyra73680;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000166;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 535244 536294 . - . ID=Phyra73680;Parent=Phyra73680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 535244 535322 . - 0 ID=Phyra73680;Parent=Phyra73680;rank=3 scaffold_4 . exon 535244 535322 . - . ID=Phyra73680.3;Parent=Phyra73680;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 535375 535913 . - 0 ID=Phyra73680;Parent=Phyra73680;rank=2 scaffold_4 . exon 535375 535913 . - . ID=Phyra73680.2;Parent=Phyra73680;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 535989 536294 . - 0 ID=Phyra73680;Parent=Phyra73680;rank=1 scaffold_4 . exon 535989 536294 . - . ID=Phyra73680.1;Parent=Phyra73680;constitutive=1;rank=1 scaffold_4 . biological_region 538340 538341 0.999 - . logic_name=eponine scaffold_4 . biological_region 540963 540964 0.999 + . logic_name=eponine scaffold_4 . repeat_region 545484 545622 . ? . description=trf scaffold_4 . biological_region 545775 545776 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 536499 537690 . - . ID=Phyra73681;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000167;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 536499 537690 . - . ID=Phyra73681;Parent=Phyra73681;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 536499 536873 . - 0 ID=Phyra73681;Parent=Phyra73681;rank=2 scaffold_4 . exon 536499 536873 . - . ID=Phyra73681.2;Parent=Phyra73681;constitutive=1;rank=2 scaffold_4 . CDS 536938 537690 . - 0 ID=Phyra73681;Parent=Phyra73681;rank=1 scaffold_4 . exon 536938 537690 . - . ID=Phyra73681.1;Parent=Phyra73681;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 538228 539458 . - . ID=Phyra73682;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000168;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 538228 539458 . - . ID=Phyra73682;Parent=Phyra73682;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 538228 538439 . - 0 ID=Phyra73682;Parent=Phyra73682;rank=3 scaffold_4 . exon 538228 538439 . - . ID=Phyra73682.3;Parent=Phyra73682;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 538519 538681 . - 0 ID=Phyra73682;Parent=Phyra73682;rank=2 scaffold_4 . exon 538519 538681 . - . ID=Phyra73682.2;Parent=Phyra73682;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 538751 539458 . - 0 ID=Phyra73682;Parent=Phyra73682;rank=1 scaffold_4 . exon 538751 539458 . - . ID=Phyra73682.1;Parent=Phyra73682;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 540697 542526 . + . ID=Phyra73683;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000169;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 540697 542526 . + . ID=Phyra73683;Parent=Phyra73683;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 540697 542526 . + 0 ID=Phyra73683;Parent=Phyra73683;rank=1 scaffold_4 . exon 540697 542526 . + . ID=Phyra73683.1;Parent=Phyra73683;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 542978 544180 . - . ID=Phyra73684;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000170;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 542978 544180 . - . ID=Phyra73684;Parent=Phyra73684;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 542978 544180 . - 0 ID=Phyra73684;Parent=Phyra73684;rank=1 scaffold_4 . exon 542978 544180 . - . ID=Phyra73684.1;Parent=Phyra73684;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 545092 546522 . - . ID=Phyra73685;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000171;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 545092 546522 . - . ID=Phyra73685;Parent=Phyra73685;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 545092 546522 . - 0 ID=Phyra73685;Parent=Phyra73685;rank=1 scaffold_4 . exon 545092 546522 . - . ID=Phyra73685.1;Parent=Phyra73685;constitutive=1;rank=1 scaffold_4 . repeat_region 550050 550061 . ? . description=dust scaffold_4 . repeat_region 552804 552822 . ? . description=dust scaffold_4 ensembl protein_coding_gene 554478 555569 . - . ID=Phyra71125;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_4000012;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 554478 555569 . - . ID=Phyra71125;Parent=Phyra71125;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 554478 555569 . - 0 ID=Phyra71125;Parent=Phyra71125;rank=1 scaffold_4 . exon 554478 555569 . - . ID=Phyra71125.1;Parent=Phyra71125;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 547424 549613 . - . ID=Phyra73686;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000172;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 547424 549613 . - . ID=Phyra73686;Parent=Phyra73686;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 547424 549613 . - 0 ID=Phyra73686;Parent=Phyra73686;rank=1 scaffold_4 . exon 547424 549613 . - . ID=Phyra73686.1;Parent=Phyra73686;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 551030 552618 . - . ID=Phyra73687;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000173;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 551030 552618 . - . ID=Phyra73687;Parent=Phyra73687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 551030 552383 . - 0 ID=Phyra73687;Parent=Phyra73687;rank=2 scaffold_4 . exon 551030 552383 . - . ID=Phyra73687.2;Parent=Phyra73687;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 552470 552618 . - 0 ID=Phyra73687;Parent=Phyra73687;rank=1 scaffold_4 . exon 552470 552618 . - . ID=Phyra73687.1;Parent=Phyra73687;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 552834 553628 . + . ID=Phyra73688;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000174;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 552834 553628 . + . ID=Phyra73688;Parent=Phyra73688;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 552834 553628 . + 0 ID=Phyra73688;Parent=Phyra73688;rank=1 scaffold_4 . exon 552834 553628 . + . ID=Phyra73688.1;Parent=Phyra73688;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 555763 556763 . + . ID=Phyra93678;biotype=protein_coding;external_name=C_scaffold_4000042;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 555763 556763 . + . ID=Phyra93678;Parent=Phyra93678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 555763 555796 . + 0 ID=Phyra93678;Parent=Phyra93678;rank=1 scaffold_4 . exon 555763 555796 . + . ID=Phyra93678.1;Parent=Phyra93678;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 556004 556217 . + 0 ID=Phyra93678;Parent=Phyra93678;rank=2 scaffold_4 . exon 556004 556217 . + . ID=Phyra93678.2;Parent=Phyra93678;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_4 . CDS 556295 556478 . + 0 ID=Phyra93678;Parent=Phyra93678;rank=3 scaffold_4 . CDS 556542 556763 . + 0 ID=Phyra93678;Parent=Phyra93678;rank=4 scaffold_4 . repeat_region 557333 557356 . ? . description=trf scaffold_4 . biological_region 561461 561465 0.999 - . logic_name=eponine scaffold_4 . biological_region 561672 561674 0.999 + . logic_name=eponine scaffold_4 . biological_region 561707 561711 0.999 - . logic_name=eponine scaffold_4 . biological_region 561748 561752 0.999 - . logic_name=eponine scaffold_4 . biological_region 561764 561765 0.999 + . logic_name=eponine scaffold_4 . biological_region 562104 562108 0.999 + . logic_name=eponine scaffold_4 . biological_region 562588 562594 0.999 + . logic_name=eponine scaffold_4 . biological_region 565872 565875 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 557624 558536 . + . ID=Phyra71126;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_4000013;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 557624 558536 . + . ID=Phyra71126;Parent=Phyra71126;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 557624 557766 . + 0 ID=Phyra71126;Parent=Phyra71126;rank=1 scaffold_4 . exon 557624 557766 . + . ID=Phyra71126.1;Parent=Phyra71126;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 557828 558020 . + 0 ID=Phyra71126;Parent=Phyra71126;rank=2 scaffold_4 . exon 557828 558020 . + . ID=Phyra71126.2;Parent=Phyra71126;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 558090 558157 . + 0 ID=Phyra71126;Parent=Phyra71126;rank=3 scaffold_4 . exon 558090 558157 . + . ID=Phyra71126.3;Parent=Phyra71126;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_4 . CDS 558223 558397 . + 0 ID=Phyra71126;Parent=Phyra71126;rank=4 scaffold_4 . exon 558223 558397 . + . ID=Phyra71126.4;Parent=Phyra71126;constitutive=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 558468 558536 . + 0 ID=Phyra71126;Parent=Phyra71126;rank=5 scaffold_4 . exon 558468 558536 . + . ID=Phyra71126.5;Parent=Phyra71126;constitutive=1;rank=5 scaffold_4 ensembl protein_coding_gene 559722 560645 . + . ID=Phyra73693;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000179;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 559722 560645 . + . ID=Phyra73693;Parent=Phyra73693;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 559722 559888 . + 0 ID=Phyra73693;Parent=Phyra73693;rank=1 scaffold_4 . exon 559722 559888 . + . ID=Phyra73693.1;Parent=Phyra73693;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 559913 560645 . + 0 ID=Phyra73693;Parent=Phyra73693;rank=2 scaffold_4 . exon 559913 560645 . + . ID=Phyra73693.2;Parent=Phyra73693;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 ensembl protein_coding_gene 561513 564278 . + . ID=Phyra73694;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000180;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 561513 564278 . + . ID=Phyra73694;Parent=Phyra73694;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 561513 562708 . + 0 ID=Phyra73694;Parent=Phyra73694;rank=1 scaffold_4 . exon 561513 562708 . + . ID=Phyra73694.1;Parent=Phyra73694;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 562778 564278 . + 0 ID=Phyra73694;Parent=Phyra73694;rank=2 scaffold_4 . exon 562778 564278 . + . ID=Phyra73694.2;Parent=Phyra73694;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 ensembl protein_coding_gene 564699 565587 . - . ID=Phyra73695;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000181;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 564699 565587 . - . ID=Phyra73695;Parent=Phyra73695;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 564699 565353 . - 0 ID=Phyra73695;Parent=Phyra73695;rank=2 scaffold_4 . exon 564699 565353 . - . ID=Phyra73695.2;Parent=Phyra73695;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 565421 565587 . - 0 ID=Phyra73695;Parent=Phyra73695;rank=1 scaffold_4 . exon 565421 565587 . - . ID=Phyra73695.1;Parent=Phyra73695;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . exon 556295 556478 . + . ID=Phyra93678.3;Parent=Phyra93678;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . exon 556542 556763 . + . ID=Phyra93678.4;Parent=Phyra93678;constitutive=1;rank=4 scaffold_4 ensembl protein_coding_gene 556981 557502 . - . ID=Phyra93679;biotype=protein_coding;external_name=C_scaffold_4000043;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 556981 557502 . - . ID=Phyra93679;Parent=Phyra93679;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 556981 557171 . - 0 ID=Phyra93679;Parent=Phyra93679;rank=2 scaffold_4 . exon 556981 557171 . - . ID=Phyra93679.2;Parent=Phyra93679;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 557232 557502 . - 0 ID=Phyra93679;Parent=Phyra93679;rank=1 scaffold_4 . exon 557232 557502 . - . ID=Phyra93679.1;Parent=Phyra93679;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . repeat_region 568771 568778 . ? . description=dust scaffold_4 ensembl protein_coding_gene 571143 572045 . + . ID=Phyra71127;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_4000014;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 571143 572045 . + . ID=Phyra71127;Parent=Phyra71127;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 571143 572045 . + 0 ID=Phyra71127;Parent=Phyra71127;rank=1 scaffold_4 . exon 571143 572045 . + . ID=Phyra71127.1;Parent=Phyra71127;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 567016 567914 . - . ID=Phyra73696;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000182;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 567016 567914 . - . ID=Phyra73696;Parent=Phyra73696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 567016 567676 . - 0 ID=Phyra73696;Parent=Phyra73696;rank=2 scaffold_4 . exon 567016 567676 . - . ID=Phyra73696.2;Parent=Phyra73696;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 567748 567914 . - 0 ID=Phyra73696;Parent=Phyra73696;rank=1 scaffold_4 . exon 567748 567914 . - . ID=Phyra73696.1;Parent=Phyra73696;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 570271 570802 . - . ID=Phyra73697;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000183;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 570271 570802 . - . ID=Phyra73697;Parent=Phyra73697;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 570271 570675 . - 0 ID=Phyra73697;Parent=Phyra73697;rank=2 scaffold_4 . exon 570271 570675 . - . ID=Phyra73697.2;Parent=Phyra73697;constitutive=1;rank=2 scaffold_4 . CDS 570800 570802 . - 0 ID=Phyra73697;Parent=Phyra73697;rank=1 scaffold_4 . exon 570800 570802 . - . ID=Phyra73697.1;Parent=Phyra73697;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 572308 573422 . + . ID=Phyra73699;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000185;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 572308 573422 . + . ID=Phyra73699;Parent=Phyra73699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 572308 572427 . + 0 ID=Phyra73699;Parent=Phyra73699;rank=1 scaffold_4 . exon 572308 572427 . + . ID=Phyra73699.1;Parent=Phyra73699;constitutive=1;rank=1 scaffold_4 . CDS 572505 573422 . + 0 ID=Phyra73699;Parent=Phyra73699;rank=2 scaffold_4 . exon 572505 573422 . + . ID=Phyra73699.2;Parent=Phyra73699;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 573567 574478 . - . ID=Phyra73700;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000186;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 573567 574478 . - . ID=Phyra73700;Parent=Phyra73700;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 573567 574478 . - 0 ID=Phyra73700;Parent=Phyra73700;rank=1 scaffold_4 . exon 573567 574478 . - . ID=Phyra73700.1;Parent=Phyra73700;constitutive=1;rank=1 scaffold_4 . biological_region 580057 580058 0.999 + . logic_name=eponine scaffold_4 . biological_region 580157 580159 0.999 - . logic_name=eponine scaffold_4 . biological_region 580392 580393 0.999 - . logic_name=eponine scaffold_4 . repeat_region 580787 580833 . ? . description=trf scaffold_4 . biological_region 580855 580857 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 580225 581610 . + . ID=Phyra48487;biotype=protein_coding;external_name=gwEuk.4.126.1;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 580225 581610 . + . ID=Phyra48487;Parent=Phyra48487;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 580225 581610 . + 0 ID=Phyra48487;Parent=Phyra48487;rank=1 scaffold_4 . exon 580225 581610 . + . ID=Phyra48487.1;Parent=Phyra48487;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 581774 582301 . - . ID=Phyra73702;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000188;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 581774 582301 . - . ID=Phyra73702;Parent=Phyra73702;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 581774 582301 . - 0 ID=Phyra73702;Parent=Phyra73702;rank=1 scaffold_4 . exon 581774 582301 . - . ID=Phyra73702.1;Parent=Phyra73702;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 582949 583866 . + . ID=Phyra73703;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000189;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 582949 583866 . + . ID=Phyra73703;Parent=Phyra73703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 582949 583112 . + 0 ID=Phyra73703;Parent=Phyra73703;rank=1 scaffold_4 . exon 582949 583112 . + . ID=Phyra73703.1;Parent=Phyra73703;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 583176 583866 . + 0 ID=Phyra73703;Parent=Phyra73703;rank=2 scaffold_4 . exon 583176 583866 . + . ID=Phyra73703.2;Parent=Phyra73703;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . repeat_region 586004 586105 . ? . description=dust scaffold_4 . repeat_region 587740 587754 . ? . description=dust scaffold_4 . repeat_region 588325 591311 . ? . description=dust scaffold_4 . repeat_region 592293 592306 . ? . description=dust scaffold_4 . repeat_region 592587 594025 . ? . description=dust scaffold_4 ensembl protein_coding_gene 594044 594808 . + . ID=Phyra71128;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_4000015;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 594044 594808 . + . ID=Phyra71128;Parent=Phyra71128;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 594044 594808 . + 0 ID=Phyra71128;Parent=Phyra71128;rank=1 scaffold_4 . exon 594044 594808 . + . ID=Phyra71128.1;Parent=Phyra71128;constitutive=1;rank=1 scaffold_4 . biological_region 596908 596909 0.999 - . logic_name=eponine scaffold_4 . repeat_region 597810 597853 . ? . description=trf scaffold_4 ensembl protein_coding_gene 598590 601260 . + . ID=Phyra73705;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000191;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 598590 601260 . + . ID=Phyra73705;Parent=Phyra73705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 598590 599094 . + 0 ID=Phyra73705;Parent=Phyra73705;rank=1 scaffold_4 . exon 598590 599094 . + . ID=Phyra73705.1;Parent=Phyra73705;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 599169 599570 . + 0 ID=Phyra73705;Parent=Phyra73705;rank=2 scaffold_4 . exon 599169 599570 . + . ID=Phyra73705.2;Parent=Phyra73705;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 599591 601260 . + 0 ID=Phyra73705;Parent=Phyra73705;rank=3 scaffold_4 . exon 599591 601260 . + . ID=Phyra73705.3;Parent=Phyra73705;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . repeat_region 606882 606890 . ? . description=dust scaffold_4 . repeat_region 613559 617021 . ? . description=dust scaffold_4 ensembl protein_coding_gene 612962 613455 . + . ID=Phyra73706;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000192;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 612962 613455 . + . ID=Phyra73706;Parent=Phyra73706;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 612962 613346 . + 0 ID=Phyra73706;Parent=Phyra73706;rank=1 scaffold_4 . exon 612962 613346 . + . ID=Phyra73706.1;Parent=Phyra73706;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 613436 613455 . + 0 ID=Phyra73706;Parent=Phyra73706;rank=2 scaffold_4 . exon 613436 613455 . + . ID=Phyra73706.2;Parent=Phyra73706;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . biological_region 617399 617403 0.999 + . logic_name=eponine scaffold_4 . biological_region 617417 617423 0.999 + . logic_name=eponine scaffold_4 . repeat_region 618112 639282 . ? . description=dust scaffold_4 . biological_region 640056 640057 0.999 - . logic_name=eponine scaffold_4 . biological_region 641919 641923 0.999 + . logic_name=eponine scaffold_4 . biological_region 644903 644905 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 644774 645909 . + . ID=Phyra71129;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_4000016;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 644774 645909 . + . ID=Phyra71129;Parent=Phyra71129;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 644774 645119 . + 0 ID=Phyra71129;Parent=Phyra71129;rank=1 scaffold_4 . exon 644774 645119 . + . ID=Phyra71129.1;Parent=Phyra71129;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 645179 645909 . + 0 ID=Phyra71129;Parent=Phyra71129;rank=2 scaffold_4 . exon 645179 645909 . + . ID=Phyra71129.2;Parent=Phyra71129;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 ensembl protein_coding_gene 642708 643903 . + . ID=Phyra73707;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000193;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 642708 643903 . + . ID=Phyra73707;Parent=Phyra73707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 642708 643045 . + 0 ID=Phyra73707;Parent=Phyra73707;rank=1 scaffold_4 . exon 642708 643045 . + . ID=Phyra73707.1;Parent=Phyra73707;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 643296 643470 . + 0 ID=Phyra73707;Parent=Phyra73707;rank=2 scaffold_4 . exon 643296 643470 . + . ID=Phyra73707.2;Parent=Phyra73707;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 643531 643677 . + 0 ID=Phyra73707;Parent=Phyra73707;rank=3 scaffold_4 . exon 643531 643677 . + . ID=Phyra73707.3;Parent=Phyra73707;constitutive=1;rank=3 scaffold_4 . CDS 643754 643903 . + 0 ID=Phyra73707;Parent=Phyra73707;rank=4 scaffold_4 . exon 643754 643903 . + . ID=Phyra73707.4;Parent=Phyra73707;constitutive=1;rank=4 scaffold_4 ensembl protein_coding_gene 648765 651168 . + . ID=Phyra71130;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_4000017;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 648765 651168 . + . ID=Phyra71130;Parent=Phyra71130;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 648765 649684 . + 0 ID=Phyra71130;Parent=Phyra71130;rank=1 scaffold_4 . exon 648765 649684 . + . ID=Phyra71130.1;Parent=Phyra71130;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 649724 651020 . + 0 ID=Phyra71130;Parent=Phyra71130;rank=2 scaffold_4 . exon 649724 651020 . + . ID=Phyra71130.2;Parent=Phyra71130;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 651040 651168 . + 0 ID=Phyra71130;Parent=Phyra71130;rank=3 scaffold_4 . exon 651040 651168 . + . ID=Phyra71130.3;Parent=Phyra71130;constitutive=1;rank=3 scaffold_4 ensembl protein_coding_gene 651273 652173 . - . ID=Phyra71131;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_4000018;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 651273 652173 . - . ID=Phyra71131;Parent=Phyra71131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 651273 651658 . - 0 ID=Phyra71131;Parent=Phyra71131;rank=2 scaffold_4 . exon 651273 651658 . - . ID=Phyra71131.2;Parent=Phyra71131;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 652050 652173 . - 0 ID=Phyra71131;Parent=Phyra71131;rank=1 scaffold_4 . exon 652050 652173 . - . ID=Phyra71131.1;Parent=Phyra71131;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 646255 648539 . - . ID=Phyra73709;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000195;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 646255 648539 . - . ID=Phyra73709;Parent=Phyra73709;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 646255 646259 . - 0 ID=Phyra73709;Parent=Phyra73709;rank=2 scaffold_4 . exon 646255 646259 . - . ID=Phyra73709.2;Parent=Phyra73709;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 646454 648539 . - 0 ID=Phyra73709;Parent=Phyra73709;rank=1 scaffold_4 . exon 646454 648539 . - . ID=Phyra73709.1;Parent=Phyra73709;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 652685 654199 . + . ID=Phyra73712;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000198;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 652685 654199 . + . ID=Phyra73712;Parent=Phyra73712;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 652685 654199 . + 0 ID=Phyra73712;Parent=Phyra73712;rank=1 scaffold_4 . exon 652685 654199 . + . ID=Phyra73712.1;Parent=Phyra73712;constitutive=1;rank=1 scaffold_4 . repeat_region 656572 656601 . ? . description=trf scaffold_4 . repeat_region 656572 656601 . ? . description=dust scaffold_4 . biological_region 658736 658741 0.999 - . logic_name=eponine scaffold_4 . biological_region 660682 660686 0.999 + . logic_name=eponine scaffold_4 . biological_region 661045 661047 0.999 - . logic_name=eponine scaffold_4 . biological_region 661464 661465 0.999 + . logic_name=eponine scaffold_4 . biological_region 661629 661631 0.999 - . logic_name=eponine scaffold_4 . biological_region 665037 665041 0.999 + . logic_name=eponine scaffold_4 . biological_region 665051 665054 0.999 - . logic_name=eponine scaffold_4 . biological_region 665075 665078 0.999 + . logic_name=eponine scaffold_4 . biological_region 665114 665118 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 655477 656220 . + . ID=Phyra73713;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000199;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 655477 656220 . + . ID=Phyra73713;Parent=Phyra73713;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 655477 656220 . + 0 ID=Phyra73713;Parent=Phyra73713;rank=1 scaffold_4 . exon 655477 656220 . + . ID=Phyra73713.1;Parent=Phyra73713;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 657868 666687 . + . ID=Phyra93683;biotype=protein_coding;external_name=C_scaffold_4000047;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 657868 666687 . + . ID=Phyra93683;Parent=Phyra93683;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 657868 658362 . + 0 ID=Phyra93683;Parent=Phyra93683;rank=1 scaffold_4 . exon 657868 658362 . + . ID=Phyra93683.1;Parent=Phyra93683;constitutive=1;rank=1 scaffold_4 . CDS 658639 658807 . + 0 ID=Phyra93683;Parent=Phyra93683;rank=2 scaffold_4 . exon 658639 658807 . + . ID=Phyra93683.2;Parent=Phyra93683;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 659165 659322 . + 0 ID=Phyra93683;Parent=Phyra93683;rank=3 scaffold_4 . exon 659165 659322 . + . ID=Phyra93683.3;Parent=Phyra93683;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 659632 662259 . + 0 ID=Phyra93683;Parent=Phyra93683;rank=4 scaffold_4 . exon 659632 662259 . + . ID=Phyra93683.4;Parent=Phyra93683;constitutive=1;rank=4 scaffold_4 . CDS 662326 662975 . + 0 ID=Phyra93683;Parent=Phyra93683;rank=5 scaffold_4 . exon 662326 662975 . + . ID=Phyra93683.5;Parent=Phyra93683;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_4 . CDS 663183 664306 . + 0 ID=Phyra93683;Parent=Phyra93683;rank=6 scaffold_4 . exon 663183 664306 . + . ID=Phyra93683.6;Parent=Phyra93683;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_4 . CDS 664340 664537 . + 0 ID=Phyra93683;Parent=Phyra93683;rank=7 scaffold_4 . exon 664340 664537 . + . ID=Phyra93683.7;Parent=Phyra93683;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_4 . CDS 664604 665973 . + 0 ID=Phyra93683;Parent=Phyra93683;rank=8 scaffold_4 . exon 664604 665973 . + . ID=Phyra93683.8;Parent=Phyra93683;constitutive=1;ensembl_phase=1;rank=8 scaffold_4 . CDS 666013 666380 . + 0 ID=Phyra93683;Parent=Phyra93683;rank=9 scaffold_4 . CDS 666543 666687 . + 0 ID=Phyra93683;Parent=Phyra93683;rank=10 scaffold_4 ensembl protein_coding_gene 668327 671422 . + . ID=Phyra73715;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000201;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 668327 671422 . + . ID=Phyra73715;Parent=Phyra73715;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 668327 671422 . + 0 ID=Phyra73715;Parent=Phyra73715;rank=1 scaffold_4 . exon 668327 671422 . + . ID=Phyra73715.1;Parent=Phyra73715;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 671914 672800 . + . ID=Phyra73716;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000202;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 671914 672800 . + . ID=Phyra73716;Parent=Phyra73716;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 671914 672080 . + 0 ID=Phyra73716;Parent=Phyra73716;rank=1 scaffold_4 . exon 671914 672080 . + . ID=Phyra73716.1;Parent=Phyra73716;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 672164 672800 . + 0 ID=Phyra73716;Parent=Phyra73716;rank=2 scaffold_4 . exon 672164 672800 . + . ID=Phyra73716.2;Parent=Phyra73716;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 ensembl protein_coding_gene 672975 673905 . - . ID=Phyra73717;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000203;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 672975 673905 . - . ID=Phyra73717;Parent=Phyra73717;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 672975 673100 . - 0 ID=Phyra73717;Parent=Phyra73717;rank=3 scaffold_4 . exon 672975 673100 . - . ID=Phyra73717.3;Parent=Phyra73717;constitutive=1;rank=3 scaffold_4 . CDS 673164 673650 . - 0 ID=Phyra73717;Parent=Phyra73717;rank=2 scaffold_4 . exon 673164 673650 . - . ID=Phyra73717.2;Parent=Phyra73717;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 673748 673905 . - 0 ID=Phyra73717;Parent=Phyra73717;rank=1 scaffold_4 . exon 673748 673905 . - . ID=Phyra73717.1;Parent=Phyra73717;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . exon 666013 666380 . + . ID=Phyra93683.9;Parent=Phyra93683;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_4 . exon 666543 666687 . + . ID=Phyra93683.10;Parent=Phyra93683;constitutive=1;ensembl_phase=2;rank=10 scaffold_4 . biological_region 675932 675936 0.999 + . logic_name=eponine scaffold_4 . biological_region 676133 676135 0.999 + . logic_name=eponine scaffold_4 . biological_region 676179 676185 0.999 + . logic_name=eponine scaffold_4 . biological_region 676230 676233 0.999 + . logic_name=eponine scaffold_4 . biological_region 676243 676244 0.999 - . logic_name=eponine scaffold_4 . biological_region 676257 676259 0.999 - . logic_name=eponine scaffold_4 . biological_region 676278 676282 0.999 - . logic_name=eponine scaffold_4 . biological_region 676319 676321 0.999 - . logic_name=eponine scaffold_4 . biological_region 676339 676342 0.999 - . logic_name=eponine scaffold_4 . biological_region 676391 676398 0.999 + . logic_name=eponine scaffold_4 . repeat_region 676529 676578 . ? . description=dust scaffold_4 . biological_region 676650 676653 0.999 + . logic_name=eponine scaffold_4 . biological_region 678832 678838 0.999 + . logic_name=eponine scaffold_4 . biological_region 678858 678862 0.999 + . logic_name=eponine scaffold_4 . biological_region 679452 679456 0.999 - . logic_name=eponine scaffold_4 . biological_region 681497 681498 0.999 + . logic_name=eponine scaffold_4 . biological_region 681513 681518 0.999 + . logic_name=eponine scaffold_4 . biological_region 681530 681533 0.999 - . logic_name=eponine scaffold_4 . biological_region 681534 681541 0.999 + . logic_name=eponine scaffold_4 . biological_region 681559 681564 0.999 + . logic_name=eponine scaffold_4 . biological_region 681593 681598 0.999 - . logic_name=eponine scaffold_4 . biological_region 683223 683226 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 676007 677196 . + . ID=Phyra73718;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000204;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 676007 677196 . + . ID=Phyra73718;Parent=Phyra73718;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 676007 676508 . + 0 ID=Phyra73718;Parent=Phyra73718;rank=1 scaffold_4 . exon 676007 676508 . + . ID=Phyra73718.1;Parent=Phyra73718;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 676592 677196 . + 0 ID=Phyra73718;Parent=Phyra73718;rank=2 scaffold_4 . exon 676592 677196 . + . ID=Phyra73718.2;Parent=Phyra73718;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 ensembl protein_coding_gene 678660 679919 . + . ID=Phyra73719;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000205;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 678660 679919 . + . ID=Phyra73719;Parent=Phyra73719;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 678660 679919 . + 0 ID=Phyra73719;Parent=Phyra73719;rank=1 scaffold_4 . exon 678660 679919 . + . ID=Phyra73719.1;Parent=Phyra73719;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 681361 682581 . + . ID=Phyra73720;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000206;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 681361 682581 . + . ID=Phyra73720;Parent=Phyra73720;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 681361 682581 . + 0 ID=Phyra73720;Parent=Phyra73720;rank=1 scaffold_4 . exon 681361 682581 . + . ID=Phyra73720.1;Parent=Phyra73720;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 682929 685043 . + . ID=Phyra73721;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000207;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 682929 685043 . + . ID=Phyra73721;Parent=Phyra73721;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 682929 685043 . + 0 ID=Phyra73721;Parent=Phyra73721;rank=1 scaffold_4 . exon 682929 685043 . + . ID=Phyra73721.1;Parent=Phyra73721;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 685670 687793 . + . ID=Phyra73722;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000208;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 685670 687793 . + . ID=Phyra73722;Parent=Phyra73722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 685670 687793 . + 0 ID=Phyra73722;Parent=Phyra73722;rank=1 scaffold_4 . exon 685670 687793 . + . ID=Phyra73722.1;Parent=Phyra73722;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 688949 689419 . + . ID=Phyra73723;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000209;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 688949 689419 . + . ID=Phyra73723;Parent=Phyra73723;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 688949 689419 . + 0 ID=Phyra73723;Parent=Phyra73723;rank=1 scaffold_4 . exon 688949 689419 . + . ID=Phyra73723.1;Parent=Phyra73723;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 694447 695614 . - . ID=Phyra73724;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000210;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 694447 695614 . - . ID=Phyra73724;Parent=Phyra73724;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 694447 694596 . - 0 ID=Phyra73724;Parent=Phyra73724;rank=3 scaffold_4 . exon 694447 694596 . - . ID=Phyra73724.3;Parent=Phyra73724;constitutive=1;rank=3 scaffold_4 . CDS 694673 694819 . - 0 ID=Phyra73724;Parent=Phyra73724;rank=2 scaffold_4 . exon 694673 694819 . - . ID=Phyra73724.2;Parent=Phyra73724;constitutive=1;rank=2 scaffold_4 . CDS 694880 695614 . - 0 ID=Phyra73724;Parent=Phyra73724;rank=1 scaffold_4 . exon 694880 695614 . - . ID=Phyra73724.1;Parent=Phyra73724;constitutive=1;rank=1 scaffold_4 . repeat_region 696090 696097 . ? . description=dust scaffold_4 . repeat_region 696509 696544 . ? . description=trf scaffold_4 . biological_region 697189 697192 0.999 + . logic_name=eponine scaffold_4 . repeat_region 698362 698381 . ? . description=trf scaffold_4 . repeat_region 698362 698381 . ? . description=dust scaffold_4 . repeat_region 701852 701861 . ? . description=dust scaffold_4 . repeat_region 702133 702189 . ? . description=trf scaffold_4 . repeat_region 702477 702533 . ? . description=trf scaffold_4 . repeat_region 702477 702540 . ? . description=dust scaffold_4 . repeat_region 703623 703664 . ? . description=trf scaffold_4 ensembl protein_coding_gene 708555 710155 . + . ID=Phyra73725;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000211;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 708555 710155 . + . ID=Phyra73725;Parent=Phyra73725;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 708555 709940 . + 0 ID=Phyra73725;Parent=Phyra73725;rank=1 scaffold_4 . exon 708555 709940 . + . ID=Phyra73725.1;Parent=Phyra73725;constitutive=1;rank=1 scaffold_4 . CDS 710102 710155 . + 0 ID=Phyra73725;Parent=Phyra73725;rank=2 scaffold_4 . exon 710102 710155 . + . ID=Phyra73725.2;Parent=Phyra73725;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 711314 714628 . - . ID=Phyra73726;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000212;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 711314 714628 . - . ID=Phyra73726;Parent=Phyra73726;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 711314 712691 . - 0 ID=Phyra73726;Parent=Phyra73726;rank=5 scaffold_4 . exon 711314 712691 . - . ID=Phyra73726.5;Parent=Phyra73726;constitutive=1;ensembl_phase=2;rank=5 scaffold_4 . CDS 712716 712878 . - 0 ID=Phyra73726;Parent=Phyra73726;rank=4 scaffold_4 . exon 712716 712878 . - . ID=Phyra73726.4;Parent=Phyra73726;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_4 . CDS 713099 713285 . - 0 ID=Phyra73726;Parent=Phyra73726;rank=3 scaffold_4 . exon 713099 713285 . - . ID=Phyra73726.3;Parent=Phyra73726;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_4 . CDS 713487 713630 . - 0 ID=Phyra73726;Parent=Phyra73726;rank=2 scaffold_4 . exon 713487 713630 . - . ID=Phyra73726.2;Parent=Phyra73726;constitutive=1;rank=2 scaffold_4 . CDS 713753 714628 . - 0 ID=Phyra73726;Parent=Phyra73726;rank=1 scaffold_4 . exon 713753 714628 . - . ID=Phyra73726.1;Parent=Phyra73726;constitutive=1;rank=1 scaffold_4 . biological_region 717365 717371 0.999 - . logic_name=eponine scaffold_4 . biological_region 717442 717443 0.999 + . logic_name=eponine scaffold_4 . biological_region 717687 717690 0.999 + . logic_name=eponine scaffold_4 . biological_region 717719 717727 0.999 + . logic_name=eponine scaffold_4 . biological_region 717770 717772 0.999 - . logic_name=eponine scaffold_4 . repeat_region 718309 718345 . ? . description=trf scaffold_4 . biological_region 720787 720789 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 717018 718364 . + . ID=Phyra73727;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000213;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 717018 718364 . + . ID=Phyra73727;Parent=Phyra73727;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 717018 718364 . + 0 ID=Phyra73727;Parent=Phyra73727;rank=1 scaffold_4 . exon 717018 718364 . + . ID=Phyra73727.1;Parent=Phyra73727;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 718505 719716 . - . ID=Phyra73728;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000214;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 718505 719716 . - . ID=Phyra73728;Parent=Phyra73728;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 718505 719068 . - 0 ID=Phyra73728;Parent=Phyra73728;rank=2 scaffold_4 . exon 718505 719068 . - . ID=Phyra73728.2;Parent=Phyra73728;constitutive=1;rank=2 scaffold_4 . CDS 719132 719716 . - 0 ID=Phyra73728;Parent=Phyra73728;rank=1 scaffold_4 . exon 719132 719716 . - . ID=Phyra73728.1;Parent=Phyra73728;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 720481 721776 . + . ID=Phyra73729;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000215;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 720481 721776 . + . ID=Phyra73729;Parent=Phyra73729;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 720481 721776 . + 0 ID=Phyra73729;Parent=Phyra73729;rank=1 scaffold_4 . exon 720481 721776 . + . ID=Phyra73729.1;Parent=Phyra73729;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 722227 723696 . + . ID=Phyra73730;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000216;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 722227 723696 . + . ID=Phyra73730;Parent=Phyra73730;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 722227 722343 . + 0 ID=Phyra73730;Parent=Phyra73730;rank=1 scaffold_4 . exon 722227 722343 . + . ID=Phyra73730.1;Parent=Phyra73730;constitutive=1;rank=1 scaffold_4 . CDS 722597 723479 . + 0 ID=Phyra73730;Parent=Phyra73730;rank=2 scaffold_4 . exon 722597 723479 . + . ID=Phyra73730.2;Parent=Phyra73730;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 723623 723696 . + 0 ID=Phyra73730;Parent=Phyra73730;rank=3 scaffold_4 . exon 723623 723696 . + . ID=Phyra73730.3;Parent=Phyra73730;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 ensembl protein_coding_gene 724363 725676 . - . ID=Phyra73731;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000217;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 724363 725676 . - . ID=Phyra73731;Parent=Phyra73731;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 724363 725676 . - 0 ID=Phyra73731;Parent=Phyra73731;rank=1 scaffold_4 . exon 724363 725676 . - . ID=Phyra73731.1;Parent=Phyra73731;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 727134 728459 . - . ID=Phyra73732;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000218;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 727134 728459 . - . ID=Phyra73732;Parent=Phyra73732;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 727134 728459 . - 0 ID=Phyra73732;Parent=Phyra73732;rank=1 scaffold_4 . exon 727134 728459 . - . ID=Phyra73732.1;Parent=Phyra73732;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 729459 730742 . - . ID=Phyra73733;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000219;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 729459 730742 . - . ID=Phyra73733;Parent=Phyra73733;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 729459 730742 . - 0 ID=Phyra73733;Parent=Phyra73733;rank=1 scaffold_4 . exon 729459 730742 . - . ID=Phyra73733.1;Parent=Phyra73733;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 731387 732685 . - . ID=Phyra73734;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000220;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 731387 732685 . - . ID=Phyra73734;Parent=Phyra73734;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 731387 732685 . - 0 ID=Phyra73734;Parent=Phyra73734;rank=1 scaffold_4 . exon 731387 732685 . - . ID=Phyra73734.1;Parent=Phyra73734;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 733629 734996 . - . ID=Phyra73735;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000221;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 733629 734996 . - . ID=Phyra73735;Parent=Phyra73735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 733629 734996 . - 0 ID=Phyra73735;Parent=Phyra73735;rank=1 scaffold_4 . exon 733629 734996 . - . ID=Phyra73735.1;Parent=Phyra73735;constitutive=1;rank=1 scaffold_4 . biological_region 737023 737029 0.999 - . logic_name=eponine scaffold_4 . biological_region 738540 738542 0.999 + . logic_name=eponine scaffold_4 . biological_region 740583 740584 0.999 - . logic_name=eponine scaffold_4 . biological_region 742747 742752 0.999 - . logic_name=eponine scaffold_4 . repeat_region 744024 744032 . ? . description=dust scaffold_4 ensembl protein_coding_gene 736254 737537 . - . ID=Phyra73736;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000222;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 736254 737537 . - . ID=Phyra73736;Parent=Phyra73736;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 736254 737537 . - 0 ID=Phyra73736;Parent=Phyra73736;rank=1 scaffold_4 . exon 736254 737537 . - . ID=Phyra73736.1;Parent=Phyra73736;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 740049 741719 . + . ID=Phyra73737;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000223;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 740049 741719 . + . ID=Phyra73737;Parent=Phyra73737;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 740049 741719 . + 0 ID=Phyra73737;Parent=Phyra73737;rank=1 scaffold_4 . exon 740049 741719 . + . ID=Phyra73737.1;Parent=Phyra73737;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 742744 743850 . + . ID=Phyra73738;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000224;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 742744 743850 . + . ID=Phyra73738;Parent=Phyra73738;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 742744 743850 . + 0 ID=Phyra73738;Parent=Phyra73738;rank=1 scaffold_4 . exon 742744 743850 . + . ID=Phyra73738.1;Parent=Phyra73738;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 744079 745371 . - . ID=Phyra73739;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000225;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 744079 745371 . - . ID=Phyra73739;Parent=Phyra73739;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 744079 745371 . - 0 ID=Phyra73739;Parent=Phyra73739;rank=1 scaffold_4 . exon 744079 745371 . - . ID=Phyra73739.1;Parent=Phyra73739;constitutive=1;rank=1 scaffold_4 . repeat_region 752254 752319 . ? . description=trf scaffold_4 ensembl protein_coding_gene 747844 749115 . - . ID=Phyra73740;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000226;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 747844 749115 . - . ID=Phyra73740;Parent=Phyra73740;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 747844 749115 . - 0 ID=Phyra73740;Parent=Phyra73740;rank=1 scaffold_4 . exon 747844 749115 . - . ID=Phyra73740.1;Parent=Phyra73740;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 750616 751677 . + . ID=Phyra73741;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000227;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 750616 751677 . + . ID=Phyra73741;Parent=Phyra73741;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 750616 751677 . + 0 ID=Phyra73741;Parent=Phyra73741;rank=1 scaffold_4 . exon 750616 751677 . + . ID=Phyra73741.1;Parent=Phyra73741;constitutive=1;rank=1 scaffold_4 . repeat_region 759259 759270 . ? . description=dust scaffold_4 . biological_region 762032 762034 0.999 - . logic_name=eponine scaffold_4 . biological_region 762078 762078 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 757459 757830 . + . ID=Phyra73742;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000228;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 757459 757830 . + . ID=Phyra73742;Parent=Phyra73742;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 757459 757830 . + 0 ID=Phyra73742;Parent=Phyra73742;rank=1 scaffold_4 . exon 757459 757830 . + . ID=Phyra73742.1;Parent=Phyra73742;constitutive=1;rank=1 scaffold_4 . repeat_region 768945 768967 . ? . description=trf scaffold_4 ensembl protein_coding_gene 773338 773913 . + . ID=Phyra73743;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000229;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 773338 773913 . + . ID=Phyra73743;Parent=Phyra73743;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 773338 773445 . + 0 ID=Phyra73743;Parent=Phyra73743;rank=1 scaffold_4 . exon 773338 773445 . + . ID=Phyra73743.1;Parent=Phyra73743;constitutive=1;rank=1 scaffold_4 . CDS 773468 773854 . + 0 ID=Phyra73743;Parent=Phyra73743;rank=2 scaffold_4 . exon 773468 773854 . + . ID=Phyra73743.2;Parent=Phyra73743;constitutive=1;rank=2 scaffold_4 . CDS 773902 773913 . + 0 ID=Phyra73743;Parent=Phyra73743;rank=3 scaffold_4 . exon 773902 773913 . + . ID=Phyra73743.3;Parent=Phyra73743;constitutive=1;rank=3 scaffold_4 . repeat_region 773970 775879 . ? . description=dust scaffold_4 . repeat_region 776742 780602 . ? . description=dust scaffold_4 ensembl protein_coding_gene 784260 785211 . + . ID=Phyra73744;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000230;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 784260 785211 . + . ID=Phyra73744;Parent=Phyra73744;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 784260 785139 . + 0 ID=Phyra73744;Parent=Phyra73744;rank=1 scaffold_4 . exon 784260 785139 . + . ID=Phyra73744.1;Parent=Phyra73744;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 785192 785211 . + 0 ID=Phyra73744;Parent=Phyra73744;rank=2 scaffold_4 . biological_region 784734 784740 0.999 - . logic_name=eponine scaffold_4 . biological_region 784920 784923 0.999 - . logic_name=eponine scaffold_4 . repeat_region 785029 785333 . ? . description=trf scaffold_4 . exon 785192 785211 . + . ID=Phyra73744.2;Parent=Phyra73744;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 ensembl protein_coding_gene 791203 792550 . - . ID=Phyra73745;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000231;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 791203 792550 . - . ID=Phyra73745;Parent=Phyra73745;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 791203 791250 . - 0 ID=Phyra73745;Parent=Phyra73745;rank=4 scaffold_4 . exon 791203 791250 . - . ID=Phyra73745.4;Parent=Phyra73745;constitutive=1;rank=4 scaffold_4 . CDS 791442 791651 . - 0 ID=Phyra73745;Parent=Phyra73745;rank=3 scaffold_4 . exon 791442 791651 . - . ID=Phyra73745.3;Parent=Phyra73745;constitutive=1;rank=3 scaffold_4 . CDS 791715 791978 . - 0 ID=Phyra73745;Parent=Phyra73745;rank=2 scaffold_4 . exon 791715 791978 . - . ID=Phyra73745.2;Parent=Phyra73745;constitutive=1;rank=2 scaffold_4 . CDS 792380 792550 . - 0 ID=Phyra73745;Parent=Phyra73745;rank=1 scaffold_4 . exon 792380 792550 . - . ID=Phyra73745.1;Parent=Phyra73745;constitutive=1;rank=1 scaffold_4 . repeat_region 795006 795055 . ? . description=dust scaffold_4 . repeat_region 797432 797444 . ? . description=dust scaffold_4 . repeat_region 801203 801210 . ? . description=dust scaffold_4 ensembl protein_coding_gene 796518 797415 . + . ID=Phyra73746;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000232;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 796518 797415 . + . ID=Phyra73746;Parent=Phyra73746;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 796518 796614 . + 0 ID=Phyra73746;Parent=Phyra73746;rank=1 scaffold_4 . exon 796518 796614 . + . ID=Phyra73746.1;Parent=Phyra73746;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 796706 797415 . + 0 ID=Phyra73746;Parent=Phyra73746;rank=2 scaffold_4 . exon 796706 797415 . + . ID=Phyra73746.2;Parent=Phyra73746;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 ensembl protein_coding_gene 801837 802712 . - . ID=Phyra73747;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000233;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 801837 802712 . - . ID=Phyra73747;Parent=Phyra73747;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 801837 802712 . - 0 ID=Phyra73747;Parent=Phyra73747;rank=1 scaffold_4 . exon 801837 802712 . - . ID=Phyra73747.1;Parent=Phyra73747;constitutive=1;rank=1 scaffold_4 . biological_region 811243 811246 0.999 - . logic_name=eponine scaffold_4 . repeat_region 817383 817425 . ? . description=trf scaffold_4 . repeat_region 817383 817426 . ? . description=trf scaffold_4 . repeat_region 820023 820034 . ? . description=dust scaffold_4 . repeat_region 824014 824021 . ? . description=dust scaffold_4 . biological_region 834974 834976 0.999 + . logic_name=eponine scaffold_4 . repeat_region 839121 839129 . ? . description=dust scaffold_4 . biological_region 840633 840635 0.999 + . logic_name=eponine scaffold_4 . biological_region 842061 842062 0.999 - . logic_name=eponine scaffold_4 . repeat_region 842971 843016 . ? . description=trf scaffold_4 ensembl protein_coding_gene 841736 842463 . + . ID=Phyra73748;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000234;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 841736 842463 . + . ID=Phyra73748;Parent=Phyra73748;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 841736 841878 . + 0 ID=Phyra73748;Parent=Phyra73748;rank=1 scaffold_4 . exon 841736 841878 . + . ID=Phyra73748.1;Parent=Phyra73748;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 841912 842045 . + 0 ID=Phyra73748;Parent=Phyra73748;rank=2 scaffold_4 . exon 841912 842045 . + . ID=Phyra73748.2;Parent=Phyra73748;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 842229 842401 . + 0 ID=Phyra73748;Parent=Phyra73748;rank=3 scaffold_4 . exon 842229 842401 . + . ID=Phyra73748.3;Parent=Phyra73748;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 842449 842463 . + 0 ID=Phyra73748;Parent=Phyra73748;rank=4 scaffold_4 . exon 842449 842463 . + . ID=Phyra73748.4;Parent=Phyra73748;constitutive=1;rank=4 scaffold_4 ensembl protein_coding_gene 847641 848846 . - . ID=Phyra73749;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000235;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 847641 848846 . - . ID=Phyra73749;Parent=Phyra73749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 847641 848846 . - 0 ID=Phyra73749;Parent=Phyra73749;rank=1 scaffold_4 . exon 847641 848846 . - . ID=Phyra73749.1;Parent=Phyra73749;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 849779 851086 . - . ID=Phyra73750;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000236;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 849779 851086 . - . ID=Phyra73750;Parent=Phyra73750;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 849779 851086 . - 0 ID=Phyra73750;Parent=Phyra73750;rank=1 scaffold_4 . exon 849779 851086 . - . ID=Phyra73750.1;Parent=Phyra73750;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 851430 852803 . - . ID=Phyra73751;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000237;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 851430 852803 . - . ID=Phyra73751;Parent=Phyra73751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 851430 852803 . - 0 ID=Phyra73751;Parent=Phyra73751;rank=1 scaffold_4 . exon 851430 852803 . - . ID=Phyra73751.1;Parent=Phyra73751;constitutive=1;rank=1 scaffold_4 . biological_region 855332 855335 0.999 - . logic_name=eponine scaffold_4 . biological_region 855674 855676 0.999 + . logic_name=eponine scaffold_4 . biological_region 855734 855735 0.999 + . logic_name=eponine scaffold_4 . biological_region 855803 855805 0.999 - . logic_name=eponine scaffold_4 . biological_region 855866 855866 0.999 + . logic_name=eponine scaffold_4 . biological_region 856445 856445 0.999 + . logic_name=eponine scaffold_4 . repeat_region 860358 860374 . ? . description=dust scaffold_4 . biological_region 860648 860649 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 854038 855396 . - . ID=Phyra73752;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000238;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 854038 855396 . - . ID=Phyra73752;Parent=Phyra73752;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 854038 855396 . - 0 ID=Phyra73752;Parent=Phyra73752;rank=1 scaffold_4 . exon 854038 855396 . - . ID=Phyra73752.1;Parent=Phyra73752;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 855714 856727 . - . ID=Phyra73753;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000239;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 855714 856727 . - . ID=Phyra73753;Parent=Phyra73753;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 855714 856727 . - 0 ID=Phyra73753;Parent=Phyra73753;rank=1 scaffold_4 . exon 855714 856727 . - . ID=Phyra73753.1;Parent=Phyra73753;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 863227 864150 . + . ID=Phyra73754;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000240;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 863227 864150 . + . ID=Phyra73754;Parent=Phyra73754;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 863227 864150 . + 0 ID=Phyra73754;Parent=Phyra73754;rank=1 scaffold_4 . exon 863227 864150 . + . ID=Phyra73754.1;Parent=Phyra73754;constitutive=1;rank=1 scaffold_4 . repeat_region 870936 870980 . ? . description=trf scaffold_4 ensembl protein_coding_gene 865341 871479 . - . ID=Phyra73755;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000241;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 865341 871479 . - . ID=Phyra73755;Parent=Phyra73755;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 865341 865991 . - 0 ID=Phyra73755;Parent=Phyra73755;rank=4 scaffold_4 . exon 865341 865991 . - . ID=Phyra73755.4;Parent=Phyra73755;constitutive=1;rank=4 scaffold_4 . CDS 866042 866101 . - 0 ID=Phyra73755;Parent=Phyra73755;rank=3 scaffold_4 . exon 866042 866101 . - . ID=Phyra73755.3;Parent=Phyra73755;constitutive=1;rank=3 scaffold_4 . CDS 866379 869283 . - 0 ID=Phyra73755;Parent=Phyra73755;rank=2 scaffold_4 . exon 866379 869283 . - . ID=Phyra73755.2;Parent=Phyra73755;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 869366 871479 . - 0 ID=Phyra73755;Parent=Phyra73755;rank=1 scaffold_4 . exon 869366 871479 . - . ID=Phyra73755.1;Parent=Phyra73755;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 872052 873809 . - . ID=Phyra73756;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000242;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 872052 873809 . - . ID=Phyra73756;Parent=Phyra73756;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 872052 873809 . - 0 ID=Phyra73756;Parent=Phyra73756;rank=1 scaffold_4 . exon 872052 873809 . - . ID=Phyra73756.1;Parent=Phyra73756;constitutive=1;rank=1 scaffold_4 . biological_region 874833 874833 0.999 + . logic_name=eponine scaffold_4 . biological_region 875436 875441 0.999 + . logic_name=eponine scaffold_4 . biological_region 875468 875470 0.999 + . logic_name=eponine scaffold_4 . repeat_region 876404 876413 . ? . description=dust scaffold_4 . biological_region 876632 876635 0.999 + . logic_name=eponine scaffold_4 . biological_region 876682 876686 0.999 - . logic_name=eponine scaffold_4 . biological_region 876737 876742 0.999 + . logic_name=eponine scaffold_4 . biological_region 876760 876763 0.999 + . logic_name=eponine scaffold_4 . biological_region 876779 876784 0.999 - . logic_name=eponine scaffold_4 . biological_region 876794 876803 0.999 - . logic_name=eponine scaffold_4 . biological_region 876906 876907 0.999 - . logic_name=eponine scaffold_4 . biological_region 877602 877605 0.999 + . logic_name=eponine scaffold_4 . biological_region 877610 877613 0.999 - . logic_name=eponine scaffold_4 . biological_region 877683 877687 0.999 - . logic_name=eponine scaffold_4 . biological_region 877716 877718 0.999 - . logic_name=eponine scaffold_4 . biological_region 877727 877732 0.999 - . logic_name=eponine scaffold_4 . biological_region 877768 877772 0.999 + . logic_name=eponine scaffold_4 . biological_region 878172 878175 0.999 + . logic_name=eponine scaffold_4 . biological_region 878242 878243 0.999 - . logic_name=eponine scaffold_4 . biological_region 878291 878296 0.999 - . logic_name=eponine scaffold_4 . biological_region 879124 879129 0.999 - . logic_name=eponine scaffold_4 . biological_region 879278 879279 0.999 + . logic_name=eponine scaffold_4 . biological_region 879430 879431 0.999 - . logic_name=eponine scaffold_4 . biological_region 879862 879863 0.999 - . logic_name=eponine scaffold_4 . biological_region 879911 879912 0.999 - . logic_name=eponine scaffold_4 . biological_region 879939 879947 0.999 + . logic_name=eponine scaffold_4 . biological_region 879953 879956 0.999 - . logic_name=eponine scaffold_4 . biological_region 880079 880085 0.999 - . logic_name=eponine scaffold_4 . biological_region 883098 883101 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 874238 875989 . - . ID=Phyra73757;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000243;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 874238 875989 . - . ID=Phyra73757;Parent=Phyra73757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 874238 875989 . - 0 ID=Phyra73757;Parent=Phyra73757;rank=1 scaffold_4 . exon 874238 875989 . - . ID=Phyra73757.1;Parent=Phyra73757;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 876443 877132 . - . ID=Phyra73758;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000244;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 876443 877132 . - . ID=Phyra73758;Parent=Phyra73758;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 876443 877132 . - 0 ID=Phyra73758;Parent=Phyra73758;rank=1 scaffold_4 . exon 876443 877132 . - . ID=Phyra73758.1;Parent=Phyra73758;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 878771 879517 . - . ID=Phyra73759;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000245;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 878771 879517 . - . ID=Phyra73759;Parent=Phyra73759;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 878771 879517 . - 0 ID=Phyra73759;Parent=Phyra73759;rank=1 scaffold_4 . exon 878771 879517 . - . ID=Phyra73759.1;Parent=Phyra73759;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 881312 883279 . + . ID=Phyra73760;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000246;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 881312 883279 . + . ID=Phyra73760;Parent=Phyra73760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 881312 883279 . + 0 ID=Phyra73760;Parent=Phyra73760;rank=1 scaffold_4 . exon 881312 883279 . + . ID=Phyra73760.1;Parent=Phyra73760;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 883526 887308 . + . ID=Phyra73761;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000247;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 883526 887308 . + . ID=Phyra73761;Parent=Phyra73761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 883526 887308 . + 0 ID=Phyra73761;Parent=Phyra73761;rank=1 scaffold_4 . exon 883526 887308 . + . ID=Phyra73761.1;Parent=Phyra73761;constitutive=1;rank=1 scaffold_4 . repeat_region 888828 888871 . ? . description=trf scaffold_4 ensembl snRNA_gene 887598 887758 . + . ID=EPrPRAG00000000211;biotype=snRNA;description=U1 spliceosomal RNA [Source:RFAM%3BAcc:RF00003];external_name=U1;logic_name=ncrna_eg scaffold_4 ensembl snRNA 887598 887758 . + . ID=EPrPRAT00000000211;Parent=EPrPRAG00000000211;biotype=snRNA;logic_name=ncrna_eg scaffold_4 . exon 887598 887758 . + . ID=EPrPRAE00000000211;Parent=EPrPRAT00000000211;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 888519 889232 . + . ID=Phyra73762;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000248;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 888519 889232 . + . ID=Phyra73762;Parent=Phyra73762;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 888519 889232 . + 0 ID=Phyra73762;Parent=Phyra73762;rank=1 scaffold_4 . exon 888519 889232 . + . ID=Phyra73762.1;Parent=Phyra73762;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 893569 896221 . - . ID=Phyra73763;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000249;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 893569 896221 . - . ID=Phyra73763;Parent=Phyra73763;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 893569 893592 . - 0 ID=Phyra73763;Parent=Phyra73763;rank=3 scaffold_4 . exon 893569 893592 . - . ID=Phyra73763.3;Parent=Phyra73763;constitutive=1;rank=3 scaffold_4 . CDS 894090 895271 . - 0 ID=Phyra73763;Parent=Phyra73763;rank=2 scaffold_4 . CDS 895574 896221 . - 0 ID=Phyra73763;Parent=Phyra73763;rank=1 scaffold_4 . repeat_region 893999 894048 . ? . description=dust scaffold_4 . biological_region 894418 894422 0.999 + . logic_name=eponine scaffold_4 . biological_region 894454 894459 0.999 + . logic_name=eponine scaffold_4 . repeat_region 895480 895529 . ? . description=dust scaffold_4 . repeat_region 896324 896467 . ? . description=dust scaffold_4 . biological_region 897960 897964 0.999 + . logic_name=eponine scaffold_4 . biological_region 898261 898261 0.999 - . logic_name=eponine scaffold_4 . biological_region 899312 899314 0.999 + . logic_name=eponine scaffold_4 . biological_region 899344 899348 0.999 - . logic_name=eponine scaffold_4 . biological_region 899396 899404 0.999 + . logic_name=eponine scaffold_4 . biological_region 899428 899429 0.999 - . logic_name=eponine scaffold_4 . biological_region 899468 899471 0.999 + . logic_name=eponine scaffold_4 . repeat_region 903365 903393 . ? . description=dust scaffold_4 . exon 894090 895271 . - . ID=Phyra73763.2;Parent=Phyra73763;constitutive=1;rank=2 scaffold_4 . exon 895574 896221 . - . ID=Phyra73763.1;Parent=Phyra73763;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 897285 897665 . + . ID=Phyra73764;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000250;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 897285 897665 . + . ID=Phyra73764;Parent=Phyra73764;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 897285 897665 . + 0 ID=Phyra73764;Parent=Phyra73764;rank=1 scaffold_4 . exon 897285 897665 . + . ID=Phyra73764.1;Parent=Phyra73764;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 898258 899154 . + . ID=Phyra73765;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000251;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 898258 899154 . + . ID=Phyra73765;Parent=Phyra73765;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 898258 899154 . + 0 ID=Phyra73765;Parent=Phyra73765;rank=1 scaffold_4 . exon 898258 899154 . + . ID=Phyra73765.1;Parent=Phyra73765;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 904885 906227 . - . ID=Phyra73766;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000252;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 904885 906227 . - . ID=Phyra73766;Parent=Phyra73766;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 904885 905680 . - 0 ID=Phyra73766;Parent=Phyra73766;rank=2 scaffold_4 . exon 904885 905680 . - . ID=Phyra73766.2;Parent=Phyra73766;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 905926 906227 . - 0 ID=Phyra73766;Parent=Phyra73766;rank=1 scaffold_4 . exon 905926 906227 . - . ID=Phyra73766.1;Parent=Phyra73766;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 907296 908279 . + . ID=Phyra73767;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000253;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 907296 908279 . + . ID=Phyra73767;Parent=Phyra73767;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 907296 908279 . + 0 ID=Phyra73767;Parent=Phyra73767;rank=1 scaffold_4 . exon 907296 908279 . + . ID=Phyra73767.1;Parent=Phyra73767;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 909878 910652 . - . ID=Phyra73768;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000254;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 909878 910652 . - . ID=Phyra73768;Parent=Phyra73768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 909878 910131 . - 0 ID=Phyra73768;Parent=Phyra73768;rank=2 scaffold_4 . exon 909878 910131 . - . ID=Phyra73768.2;Parent=Phyra73768;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 910199 910652 . - 0 ID=Phyra73768;Parent=Phyra73768;rank=1 scaffold_4 . exon 910199 910652 . - . ID=Phyra73768.1;Parent=Phyra73768;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 910826 911815 . + . ID=Phyra73769;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000255;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 910826 911815 . + . ID=Phyra73769;Parent=Phyra73769;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 910826 911815 . + 0 ID=Phyra73769;Parent=Phyra73769;rank=1 scaffold_4 . exon 910826 911815 . + . ID=Phyra73769.1;Parent=Phyra73769;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 911985 913314 . - . ID=Phyra73770;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000256;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 911985 913314 . - . ID=Phyra73770;Parent=Phyra73770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 911985 911993 . - 0 ID=Phyra73770;Parent=Phyra73770;rank=2 scaffold_4 . exon 911985 911993 . - . ID=Phyra73770.2;Parent=Phyra73770;constitutive=1;rank=2 scaffold_4 . CDS 912013 913314 . - 0 ID=Phyra73770;Parent=Phyra73770;rank=1 scaffold_4 . exon 912013 913314 . - . ID=Phyra73770.1;Parent=Phyra73770;constitutive=1;rank=1 scaffold_4 . biological_region 913623 913627 0.999 - . logic_name=eponine scaffold_4 . repeat_region 913818 913841 . ? . description=trf scaffold_4 . biological_region 916295 916296 0.999 + . logic_name=eponine scaffold_4 . biological_region 918847 918849 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 914768 916095 . + . ID=Phyra73772;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000258;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 914768 916095 . + . ID=Phyra73772;Parent=Phyra73772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 914768 914985 . + 0 ID=Phyra73772;Parent=Phyra73772;rank=1 scaffold_4 . exon 914768 914985 . + . ID=Phyra73772.1;Parent=Phyra73772;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 915054 915155 . + 0 ID=Phyra73772;Parent=Phyra73772;rank=2 scaffold_4 . exon 915054 915155 . + . ID=Phyra73772.2;Parent=Phyra73772;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 915222 916095 . + 0 ID=Phyra73772;Parent=Phyra73772;rank=3 scaffold_4 . exon 915222 916095 . + . ID=Phyra73772.3;Parent=Phyra73772;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 ensembl protein_coding_gene 916163 917143 . - . ID=Phyra73773;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000259;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 916163 917143 . - . ID=Phyra73773;Parent=Phyra73773;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 916163 917028 . - 0 ID=Phyra73773;Parent=Phyra73773;rank=2 scaffold_4 . exon 916163 917028 . - . ID=Phyra73773.2;Parent=Phyra73773;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 917104 917143 . - 0 ID=Phyra73773;Parent=Phyra73773;rank=1 scaffold_4 . exon 917104 917143 . - . ID=Phyra73773.1;Parent=Phyra73773;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 917515 918969 . - . ID=Phyra73774;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000260;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 917515 918969 . - . ID=Phyra73774;Parent=Phyra73774;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 917515 918507 . - 0 ID=Phyra73774;Parent=Phyra73774;rank=3 scaffold_4 . exon 917515 918507 . - . ID=Phyra73774.3;Parent=Phyra73774;constitutive=1;rank=3 scaffold_4 . CDS 918578 918648 . - 0 ID=Phyra73774;Parent=Phyra73774;rank=2 scaffold_4 . exon 918578 918648 . - . ID=Phyra73774.2;Parent=Phyra73774;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 918708 918969 . - 0 ID=Phyra73774;Parent=Phyra73774;rank=1 scaffold_4 . exon 918708 918969 . - . ID=Phyra73774.1;Parent=Phyra73774;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 919176 921221 . + . ID=Phyra73775;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000261;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 919176 921221 . + . ID=Phyra73775;Parent=Phyra73775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 919176 921221 . + 0 ID=Phyra73775;Parent=Phyra73775;rank=1 scaffold_4 . exon 919176 921221 . + . ID=Phyra73775.1;Parent=Phyra73775;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 913544 913860 . + . ID=Phyra93699;biotype=protein_coding;external_name=C_scaffold_4000063;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 913544 913860 . + . ID=Phyra93699;Parent=Phyra93699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 913544 913579 . + 0 ID=Phyra93699;Parent=Phyra93699;rank=1 scaffold_4 . exon 913544 913579 . + . ID=Phyra93699.1;Parent=Phyra93699;constitutive=1;rank=1 scaffold_4 . CDS 913669 913860 . + 0 ID=Phyra93699;Parent=Phyra93699;rank=2 scaffold_4 . exon 913669 913860 . + . ID=Phyra93699.2;Parent=Phyra93699;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 914024 914572 . - . ID=Phyra93700;biotype=protein_coding;external_name=C_scaffold_4000064;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 914024 914572 . - . ID=Phyra93700;Parent=Phyra93700;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 914024 914446 . - 0 ID=Phyra93700;Parent=Phyra93700;rank=2 scaffold_4 . exon 914024 914446 . - . ID=Phyra93700.2;Parent=Phyra93700;constitutive=1;rank=2 scaffold_4 . CDS 914519 914572 . - 0 ID=Phyra93700;Parent=Phyra93700;rank=1 scaffold_4 . exon 914519 914572 . - . ID=Phyra93700.1;Parent=Phyra93700;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 921353 926334 . - . ID=Phyra93703;biotype=protein_coding;external_name=C_scaffold_4000067;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 921353 926334 . - . ID=Phyra93703;Parent=Phyra93703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 921353 923258 . - 0 ID=Phyra93703;Parent=Phyra93703;rank=7 scaffold_4 . exon 921353 923258 . - . ID=Phyra93703.7;Parent=Phyra93703;constitutive=1;ensembl_phase=2;rank=7 scaffold_4 . CDS 923452 923576 . - 0 ID=Phyra93703;Parent=Phyra93703;rank=6 scaffold_4 . CDS 923712 923804 . - 0 ID=Phyra93703;Parent=Phyra93703;rank=5 scaffold_4 . CDS 923862 923899 . - 0 ID=Phyra93703;Parent=Phyra93703;rank=4 scaffold_4 . CDS 923965 924307 . - 0 ID=Phyra93703;Parent=Phyra93703;rank=3 scaffold_4 . CDS 925103 925804 . - 0 ID=Phyra93703;Parent=Phyra93703;rank=2 scaffold_4 . CDS 925873 926334 . - 0 ID=Phyra93703;Parent=Phyra93703;rank=1 scaffold_4 . repeat_region 932758 932766 . ? . description=dust scaffold_4 ensembl protein_coding_gene 927919 929487 . + . ID=Phyra73778;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000264;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 927919 929487 . + . ID=Phyra73778;Parent=Phyra73778;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 927919 929487 . + 0 ID=Phyra73778;Parent=Phyra73778;rank=1 scaffold_4 . exon 927919 929487 . + . ID=Phyra73778.1;Parent=Phyra73778;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 929675 930518 . + . ID=Phyra73779;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000265;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 929675 930518 . + . ID=Phyra73779;Parent=Phyra73779;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 929675 930465 . + 0 ID=Phyra73779;Parent=Phyra73779;rank=1 scaffold_4 . exon 929675 930465 . + . ID=Phyra73779.1;Parent=Phyra73779;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 930506 930518 . + 0 ID=Phyra73779;Parent=Phyra73779;rank=2 scaffold_4 . exon 930506 930518 . + . ID=Phyra73779.2;Parent=Phyra73779;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 ensembl protein_coding_gene 930729 931563 . - . ID=Phyra73780;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000266;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 930729 931563 . - . ID=Phyra73780;Parent=Phyra73780;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 930729 931238 . - 0 ID=Phyra73780;Parent=Phyra73780;rank=3 scaffold_4 . exon 930729 931238 . - . ID=Phyra73780.3;Parent=Phyra73780;constitutive=1;rank=3 scaffold_4 . CDS 931329 931411 . - 0 ID=Phyra73780;Parent=Phyra73780;rank=2 scaffold_4 . exon 931329 931411 . - . ID=Phyra73780.2;Parent=Phyra73780;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 931536 931563 . - 0 ID=Phyra73780;Parent=Phyra73780;rank=1 scaffold_4 . exon 931536 931563 . - . ID=Phyra73780.1;Parent=Phyra73780;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 931715 932182 . + . ID=Phyra73781;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000267;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 931715 932182 . + . ID=Phyra73781;Parent=Phyra73781;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 931715 932182 . + 0 ID=Phyra73781;Parent=Phyra73781;rank=1 scaffold_4 . exon 931715 932182 . + . ID=Phyra73781.1;Parent=Phyra73781;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 932774 934519 . + . ID=Phyra73782;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000268;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 932774 934519 . + . ID=Phyra73782;Parent=Phyra73782;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 932774 934519 . + 0 ID=Phyra73782;Parent=Phyra73782;rank=1 scaffold_4 . exon 932774 934519 . + . ID=Phyra73782.1;Parent=Phyra73782;constitutive=1;rank=1 scaffold_4 . exon 923452 923576 . - . ID=Phyra93703.6;Parent=Phyra93703;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_4 . exon 923712 923804 . - . ID=Phyra93703.5;Parent=Phyra93703;constitutive=1;rank=5 scaffold_4 . exon 923862 923899 . - . ID=Phyra93703.4;Parent=Phyra93703;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 . exon 923965 924307 . - . ID=Phyra93703.3;Parent=Phyra93703;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_4 . exon 925103 925804 . - . ID=Phyra93703.2;Parent=Phyra93703;constitutive=1;rank=2 scaffold_4 . exon 925873 926334 . - . ID=Phyra93703.1;Parent=Phyra93703;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 926564 926875 . + . ID=Phyra93704;biotype=protein_coding;external_name=C_scaffold_4000068;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 926564 926875 . + . ID=Phyra93704;Parent=Phyra93704;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 926564 926875 . + 0 ID=Phyra93704;Parent=Phyra93704;rank=1 scaffold_4 . exon 926564 926875 . + . ID=Phyra93704.1;Parent=Phyra93704;constitutive=1;rank=1 scaffold_4 . repeat_region 935451 935477 . ? . description=trf scaffold_4 ensembl pseudogene 941315 942408 . - . ID=Phyra48524;biotype=pseudogene;external_name=gwEuk.4.163.1;logic_name=jgi_phyra1 scaffold_4 ensembl pseudogene 941315 942408 . - . ID=Phyra48524;Parent=Phyra48524;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_4 . exon 941315 942408 . - . ID=Phyra48524.1;Parent=Phyra48524;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 934873 936068 . + . ID=Phyra73783;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000269;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 934873 936068 . + . ID=Phyra73783;Parent=Phyra73783;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 934873 935268 . + 0 ID=Phyra73783;Parent=Phyra73783;rank=1 scaffold_4 . exon 934873 935268 . + . ID=Phyra73783.1;Parent=Phyra73783;constitutive=1;rank=1 scaffold_4 . CDS 935433 935464 . + 0 ID=Phyra73783;Parent=Phyra73783;rank=2 scaffold_4 . exon 935433 935464 . + . ID=Phyra73783.2;Parent=Phyra73783;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 935511 935853 . + 0 ID=Phyra73783;Parent=Phyra73783;rank=3 scaffold_4 . exon 935511 935853 . + . ID=Phyra73783.3;Parent=Phyra73783;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 935922 936068 . + 0 ID=Phyra73783;Parent=Phyra73783;rank=4 scaffold_4 . exon 935922 936068 . + . ID=Phyra73783.4;Parent=Phyra73783;constitutive=1;rank=4 scaffold_4 ensembl protein_coding_gene 937096 937854 . + . ID=Phyra73784;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000270;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 937096 937854 . + . ID=Phyra73784;Parent=Phyra73784;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 937096 937854 . + 0 ID=Phyra73784;Parent=Phyra73784;rank=1 scaffold_4 . exon 937096 937854 . + . ID=Phyra73784.1;Parent=Phyra73784;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 938405 939058 . + . ID=Phyra73785;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000271;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 938405 939058 . + . ID=Phyra73785;Parent=Phyra73785;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 938405 939058 . + 0 ID=Phyra73785;Parent=Phyra73785;rank=1 scaffold_4 . exon 938405 939058 . + . ID=Phyra73785.1;Parent=Phyra73785;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 939233 941154 . - . ID=Phyra93705;biotype=protein_coding;external_name=C_scaffold_4000069;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 939233 941154 . - . ID=Phyra93705;Parent=Phyra93705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 939233 939830 . - 0 ID=Phyra93705;Parent=Phyra93705;rank=3 scaffold_4 . exon 939233 939830 . - . ID=Phyra93705.3;Parent=Phyra93705;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 939864 940877 . - 0 ID=Phyra93705;Parent=Phyra93705;rank=2 scaffold_4 . exon 939864 940877 . - . ID=Phyra93705.2;Parent=Phyra93705;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 940943 941154 . - 0 ID=Phyra93705;Parent=Phyra93705;rank=1 scaffold_4 . exon 940943 941154 . - . ID=Phyra93705.1;Parent=Phyra93705;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . biological_region 945203 945203 0.999 + . logic_name=eponine scaffold_4 . biological_region 952754 952760 0.999 + . logic_name=eponine scaffold_4 . biological_region 952835 952838 0.999 - . logic_name=eponine scaffold_4 . biological_region 952871 952873 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 950450 952135 . - . ID=Phyra48527;biotype=protein_coding;external_name=gwEuk.4.166.1;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 950450 952135 . - . ID=Phyra48527;Parent=Phyra48527;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 950450 951447 . - 0 ID=Phyra48527;Parent=Phyra48527;rank=2 scaffold_4 . exon 950450 951447 . - . ID=Phyra48527.2;Parent=Phyra48527;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 951535 952135 . - 0 ID=Phyra48527;Parent=Phyra48527;rank=1 scaffold_4 . exon 951535 952135 . - . ID=Phyra48527.1;Parent=Phyra48527;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 945150 947076 . + . ID=Phyra73788;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000274;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 945150 947076 . + . ID=Phyra73788;Parent=Phyra73788;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 945150 945364 . + 0 ID=Phyra73788;Parent=Phyra73788;rank=1 scaffold_4 . exon 945150 945364 . + . ID=Phyra73788.1;Parent=Phyra73788;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 945432 947076 . + 0 ID=Phyra73788;Parent=Phyra73788;rank=2 scaffold_4 . exon 945432 947076 . + . ID=Phyra73788.2;Parent=Phyra73788;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 ensembl protein_coding_gene 952664 954355 . + . ID=Phyra73792;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000278;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 952664 954355 . + . ID=Phyra73792;Parent=Phyra73792;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 952664 954355 . + 0 ID=Phyra73792;Parent=Phyra73792;rank=1 scaffold_4 . exon 952664 954355 . + . ID=Phyra73792.1;Parent=Phyra73792;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 947256 949256 . - . ID=Phyra93708;biotype=protein_coding;external_name=C_scaffold_4000072;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 947256 949256 . - . ID=Phyra93708;Parent=Phyra93708;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 947256 947559 . - 0 ID=Phyra93708;Parent=Phyra93708;rank=3 scaffold_4 . exon 947256 947559 . - . ID=Phyra93708.3;Parent=Phyra93708;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 947590 947934 . - 0 ID=Phyra93708;Parent=Phyra93708;rank=2 scaffold_4 . exon 947590 947934 . - . ID=Phyra93708.2;Parent=Phyra93708;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 948625 949256 . - 0 ID=Phyra93708;Parent=Phyra93708;rank=1 scaffold_4 . exon 948625 949256 . - . ID=Phyra93708.1;Parent=Phyra93708;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . repeat_region 954814 956913 . ? . description=dust scaffold_4 . repeat_region 959582 959590 . ? . description=dust scaffold_4 . repeat_region 962289 962338 . ? . description=dust scaffold_4 ensembl protein_coding_gene 960483 963002 . + . ID=Phyra73793;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_4000279;logic_name=jgi_phyra1 scaffold_4 ensembl transcript 960483 963002 . + . ID=Phyra73793;Parent=Phyra73793;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_4 . CDS 960483 962236 . + 0 ID=Phyra73793;Parent=Phyra73793;rank=1 scaffold_4 . exon 960483 962236 . + . ID=Phyra73793.1;Parent=Phyra73793;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 962440 962476 . + 0 ID=Phyra73793;Parent=Phyra73793;rank=2 scaffold_4 . exon 962440 962476 . + . ID=Phyra73793.2;Parent=Phyra73793;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 962665 962681 . + 0 ID=Phyra73793;Parent=Phyra73793;rank=3 scaffold_4 . exon 962665 962681 . + . ID=Phyra73793.3;Parent=Phyra73793;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_4 . CDS 962711 963002 . + 0 ID=Phyra73793;Parent=Phyra73793;rank=4 scaffold_4 . exon 962711 963002 . + . ID=Phyra73793.4;Parent=Phyra73793;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_2 1 1019282 scaffold_2 . repeat_region 2947 3562 . ? . description=dust scaffold_2 . repeat_region 5312 5452 . ? . description=trf scaffold_2 . biological_region 5325 5327 0.999 - . logic_name=eponine scaffold_2 . repeat_region 5889 6977 . ? . description=dust scaffold_2 . biological_region 8621 8625 0.999 - . logic_name=eponine scaffold_2 . repeat_region 8700 28027 . ? . description=dust scaffold_2 ensembl protein_coding_gene 852 1952 . - . ID=Phyra72936;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000001;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 852 1952 . - . ID=Phyra72936;Parent=Phyra72936;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 852 1952 . - 0 ID=Phyra72936;Parent=Phyra72936;rank=1 scaffold_2 . exon 852 1952 . - . ID=Phyra72936.1;Parent=Phyra72936;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 2349 3954 . + . ID=Phyra72937;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000002;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 2349 3954 . + . ID=Phyra72937;Parent=Phyra72937;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 2349 2404 . + 0 ID=Phyra72937;Parent=Phyra72937;rank=1 scaffold_2 . exon 2349 2404 . + . ID=Phyra72937.1;Parent=Phyra72937;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 2603 2902 . + 0 ID=Phyra72937;Parent=Phyra72937;rank=2 scaffold_2 . exon 2603 2902 . + . ID=Phyra72937.2;Parent=Phyra72937;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 3588 3954 . + 0 ID=Phyra72937;Parent=Phyra72937;rank=3 scaffold_2 . exon 3588 3954 . + . ID=Phyra72937.3;Parent=Phyra72937;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 ensembl protein_coding_gene 4882 5584 . + . ID=Phyra72938;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000003;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 4882 5584 . + . ID=Phyra72938;Parent=Phyra72938;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 4882 5142 . + 0 ID=Phyra72938;Parent=Phyra72938;rank=1 scaffold_2 . exon 4882 5142 . + . ID=Phyra72938.1;Parent=Phyra72938;constitutive=1;rank=1 scaffold_2 . CDS 5228 5584 . + 0 ID=Phyra72938;Parent=Phyra72938;rank=2 scaffold_2 . exon 5228 5584 . + . ID=Phyra72938.2;Parent=Phyra72938;constitutive=1;rank=2 scaffold_2 . repeat_region 8700 28027 . ? . description=dust scaffold_2 . biological_region 28908 28912 0.999 - . logic_name=eponine scaffold_2 . repeat_region 29700 30306 . + . description=GypsyPi-1c_I-int scaffold_2 ensembl protein_coding_gene 28214 30777 . - . ID=Phyra72939;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000004;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 28214 30777 . - . ID=Phyra72939;Parent=Phyra72939;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 28214 29142 . - 0 ID=Phyra72939;Parent=Phyra72939;rank=3 scaffold_2 . exon 28214 29142 . - . ID=Phyra72939.3;Parent=Phyra72939;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 29759 30487 . - 0 ID=Phyra72939;Parent=Phyra72939;rank=2 scaffold_2 . exon 29759 30487 . - . ID=Phyra72939.2;Parent=Phyra72939;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 30552 30777 . - 0 ID=Phyra72939;Parent=Phyra72939;rank=1 scaffold_2 . repeat_region 30961 31247 . + . description=GypsyPi-1c_LTR scaffold_2 . exon 30552 30777 . - . ID=Phyra72939.1;Parent=Phyra72939;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 31789 32697 . + . ID=Phyra72940;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000005;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 31789 32697 . + . ID=Phyra72940;Parent=Phyra72940;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 31789 32697 . + 0 ID=Phyra72940;Parent=Phyra72940;rank=1 scaffold_2 . exon 31789 32697 . + . ID=Phyra72940.1;Parent=Phyra72940;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 33528 34859 . + . ID=Phyra72941;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000006;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 33528 34859 . + . ID=Phyra72941;Parent=Phyra72941;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 33528 34859 . + 0 ID=Phyra72941;Parent=Phyra72941;rank=1 scaffold_2 . exon 33528 34859 . + . ID=Phyra72941.1;Parent=Phyra72941;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 35806 37944 . + . ID=Phyra72942;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000007;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 35806 37944 . + . ID=Phyra72942;Parent=Phyra72942;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 35806 37944 . + 0 ID=Phyra72942;Parent=Phyra72942;rank=1 scaffold_2 . exon 35806 37944 . + . ID=Phyra72942.1;Parent=Phyra72942;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 38251 40873 . + . ID=Phyra72943;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000008;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 38251 40873 . + . ID=Phyra72943;Parent=Phyra72943;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 38251 39303 . + 0 ID=Phyra72943;Parent=Phyra72943;rank=1 scaffold_2 . exon 38251 39303 . + . ID=Phyra72943.1;Parent=Phyra72943;constitutive=1;rank=1 scaffold_2 . CDS 39380 39715 . + 0 ID=Phyra72943;Parent=Phyra72943;rank=2 scaffold_2 . exon 39380 39715 . + . ID=Phyra72943.2;Parent=Phyra72943;constitutive=1;rank=2 scaffold_2 . CDS 39801 39887 . + 0 ID=Phyra72943;Parent=Phyra72943;rank=3 scaffold_2 . exon 39801 39887 . + . ID=Phyra72943.3;Parent=Phyra72943;constitutive=1;rank=3 scaffold_2 . CDS 39955 40421 . + 0 ID=Phyra72943;Parent=Phyra72943;rank=4 scaffold_2 . exon 39955 40421 . + . ID=Phyra72943.4;Parent=Phyra72943;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . CDS 40502 40658 . + 0 ID=Phyra72943;Parent=Phyra72943;rank=5 scaffold_2 . CDS 40739 40873 . + 0 ID=Phyra72943;Parent=Phyra72943;rank=6 scaffold_2 . biological_region 41523 41526 0.999 + . logic_name=eponine scaffold_2 . biological_region 41691 41691 0.999 + . logic_name=eponine scaffold_2 . biological_region 41859 41866 0.999 - . logic_name=eponine scaffold_2 . exon 40502 40658 . + . ID=Phyra72943.5;Parent=Phyra72943;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . exon 40739 40873 . + . ID=Phyra72943.6;Parent=Phyra72943;constitutive=1;rank=6 scaffold_2 ensembl protein_coding_gene 41313 41993 . - . ID=Phyra72944;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000009;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 41313 41993 . - . ID=Phyra72944;Parent=Phyra72944;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 41313 41993 . - 0 ID=Phyra72944;Parent=Phyra72944;rank=1 scaffold_2 . exon 41313 41993 . - . ID=Phyra72944.1;Parent=Phyra72944;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 43334 44011 . + . ID=Phyra72945;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000010;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 43334 44011 . + . ID=Phyra72945;Parent=Phyra72945;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 43334 44011 . + 0 ID=Phyra72945;Parent=Phyra72945;rank=1 scaffold_2 . exon 43334 44011 . + . ID=Phyra72945.1;Parent=Phyra72945;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 44406 48474 . - . ID=Phyra72946;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000011;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 44406 48474 . - . ID=Phyra72946;Parent=Phyra72946;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 44406 44442 . - 0 ID=Phyra72946;Parent=Phyra72946;rank=3 scaffold_2 . exon 44406 44442 . - . ID=Phyra72946.3;Parent=Phyra72946;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 44486 46829 . - 0 ID=Phyra72946;Parent=Phyra72946;rank=2 scaffold_2 . exon 44486 46829 . - . ID=Phyra72946.2;Parent=Phyra72946;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 46911 48474 . - 0 ID=Phyra72946;Parent=Phyra72946;rank=1 scaffold_2 . exon 46911 48474 . - . ID=Phyra72946.1;Parent=Phyra72946;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . repeat_region 52699 52711 . ? . description=dust scaffold_2 . repeat_region 54106 54121 . ? . description=dust scaffold_2 . repeat_region 57478 57527 . ? . description=dust scaffold_2 . repeat_region 58173 58195 . ? . description=dust scaffold_2 . repeat_region 58444 58722 . - . description=GypsyPi-1c_I-int scaffold_2 . repeat_region 58907 58956 . ? . description=dust scaffold_2 . repeat_region 59289 59302 . ? . description=dust scaffold_2 . repeat_region 59555 59833 . - . description=GypsyPi-1c_I-int scaffold_2 ensembl protein_coding_gene 53919 56872 . + . ID=Phyra72947;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000012;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 53919 56872 . + . ID=Phyra72947;Parent=Phyra72947;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 53919 54064 . + 0 ID=Phyra72947;Parent=Phyra72947;rank=1 scaffold_2 . exon 53919 54064 . + . ID=Phyra72947.1;Parent=Phyra72947;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 54297 54367 . + 0 ID=Phyra72947;Parent=Phyra72947;rank=2 scaffold_2 . exon 54297 54367 . + . ID=Phyra72947.2;Parent=Phyra72947;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 54463 54922 . + 0 ID=Phyra72947;Parent=Phyra72947;rank=3 scaffold_2 . exon 54463 54922 . + . ID=Phyra72947.3;Parent=Phyra72947;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_2 . CDS 54962 55064 . + 0 ID=Phyra72947;Parent=Phyra72947;rank=4 scaffold_2 . exon 54962 55064 . + . ID=Phyra72947.4;Parent=Phyra72947;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 55659 56245 . + 0 ID=Phyra72947;Parent=Phyra72947;rank=5 scaffold_2 . exon 55659 56245 . + . ID=Phyra72947.5;Parent=Phyra72947;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_2 . CDS 56357 56777 . + 0 ID=Phyra72947;Parent=Phyra72947;rank=6 scaffold_2 . exon 56357 56777 . + . ID=Phyra72947.6;Parent=Phyra72947;constitutive=1;ensembl_phase=2;rank=6 scaffold_2 . CDS 56861 56872 . + 0 ID=Phyra72947;Parent=Phyra72947;rank=7 scaffold_2 . exon 56861 56872 . + . ID=Phyra72947.7;Parent=Phyra72947;constitutive=1;rank=7 scaffold_2 . biological_region 63818 63822 0.999 - . logic_name=eponine scaffold_2 . biological_region 63859 63860 0.999 + . logic_name=eponine scaffold_2 . biological_region 63921 63924 0.999 - . logic_name=eponine scaffold_2 . biological_region 63973 63976 0.999 - . logic_name=eponine scaffold_2 . biological_region 68244 68250 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 61981 64700 . - . ID=Phyra72948;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000013;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 61981 64700 . - . ID=Phyra72948;Parent=Phyra72948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 61981 62433 . - 0 ID=Phyra72948;Parent=Phyra72948;rank=7 scaffold_2 . exon 61981 62433 . - . ID=Phyra72948.7;Parent=Phyra72948;constitutive=1;rank=7 scaffold_2 . CDS 62727 62936 . - 0 ID=Phyra72948;Parent=Phyra72948;rank=6 scaffold_2 . exon 62727 62936 . - . ID=Phyra72948.6;Parent=Phyra72948;constitutive=1;rank=6 scaffold_2 . CDS 63000 63159 . - 0 ID=Phyra72948;Parent=Phyra72948;rank=5 scaffold_2 . exon 63000 63159 . - . ID=Phyra72948.5;Parent=Phyra72948;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 63232 63613 . - 0 ID=Phyra72948;Parent=Phyra72948;rank=4 scaffold_2 . exon 63232 63613 . - . ID=Phyra72948.4;Parent=Phyra72948;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_2 . CDS 63640 64013 . - 0 ID=Phyra72948;Parent=Phyra72948;rank=3 scaffold_2 . exon 63640 64013 . - . ID=Phyra72948.3;Parent=Phyra72948;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 64343 64464 . - 0 ID=Phyra72948;Parent=Phyra72948;rank=2 scaffold_2 . exon 64343 64464 . - . ID=Phyra72948.2;Parent=Phyra72948;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 64623 64700 . - 0 ID=Phyra72948;Parent=Phyra72948;rank=1 scaffold_2 . exon 64623 64700 . - . ID=Phyra72948.1;Parent=Phyra72948;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 65565 66607 . - . ID=Phyra72949;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000014;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 65565 66607 . - . ID=Phyra72949;Parent=Phyra72949;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 65565 65861 . - 0 ID=Phyra72949;Parent=Phyra72949;rank=3 scaffold_2 . exon 65565 65861 . - . ID=Phyra72949.3;Parent=Phyra72949;constitutive=1;rank=3 scaffold_2 . CDS 65925 66285 . - 0 ID=Phyra72949;Parent=Phyra72949;rank=2 scaffold_2 . exon 65925 66285 . - . ID=Phyra72949.2;Parent=Phyra72949;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 66360 66607 . - 0 ID=Phyra72949;Parent=Phyra72949;rank=1 scaffold_2 . exon 66360 66607 . - . ID=Phyra72949.1;Parent=Phyra72949;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 68346 70151 . + . ID=Phyra72950;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000015;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 68346 70151 . + . ID=Phyra72950;Parent=Phyra72950;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 68346 70151 . + 0 ID=Phyra72950;Parent=Phyra72950;rank=1 scaffold_2 . exon 68346 70151 . + . ID=Phyra72950.1;Parent=Phyra72950;constitutive=1;rank=1 scaffold_2 . repeat_region 75412 75452 . ? . description=trf scaffold_2 . repeat_region 76769 76828 . ? . description=dust scaffold_2 . repeat_region 78522 78529 . ? . description=dust scaffold_2 . repeat_region 78901 78928 . ? . description=dust scaffold_2 ensembl protein_coding_gene 78159 78395 . + . ID=Phyra44001;biotype=protein_coding;external_name=gwEuk.2.252.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 78159 78395 . + . ID=Phyra44001;Parent=Phyra44001;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 78159 78395 . + 0 ID=Phyra44001;Parent=Phyra44001;rank=1 scaffold_2 . exon 78159 78395 . + . ID=Phyra44001.1;Parent=Phyra44001;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 79858 81283 . - . ID=Phyra44006;biotype=protein_coding;external_name=gwEuk.2.257.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 79858 81283 . - . ID=Phyra44006;Parent=Phyra44006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 79858 80811 . - 0 ID=Phyra44006;Parent=Phyra44006;rank=3 scaffold_2 . exon 79858 80811 . - . ID=Phyra44006.3;Parent=Phyra44006;constitutive=1;rank=3 scaffold_2 . CDS 80898 81086 . - 0 ID=Phyra44006;Parent=Phyra44006;rank=2 scaffold_2 . CDS 81173 81283 . - 0 ID=Phyra44006;Parent=Phyra44006;rank=1 scaffold_2 ensembl protein_coding_gene 73324 75239 . + . ID=Phyra71060;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000001;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 73324 75239 . + . ID=Phyra71060;Parent=Phyra71060;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 73324 73392 . + 0 ID=Phyra71060;Parent=Phyra71060;rank=1 scaffold_2 . exon 73324 73392 . + . ID=Phyra71060.1;Parent=Phyra71060;constitutive=1;rank=1 scaffold_2 . CDS 73460 73534 . + 0 ID=Phyra71060;Parent=Phyra71060;rank=2 scaffold_2 . exon 73460 73534 . + . ID=Phyra71060.2;Parent=Phyra71060;constitutive=1;rank=2 scaffold_2 . CDS 73618 73665 . + 0 ID=Phyra71060;Parent=Phyra71060;rank=3 scaffold_2 . exon 73618 73665 . + . ID=Phyra71060.3;Parent=Phyra71060;constitutive=1;rank=3 scaffold_2 . CDS 73730 74152 . + 0 ID=Phyra71060;Parent=Phyra71060;rank=4 scaffold_2 . exon 73730 74152 . + . ID=Phyra71060.4;Parent=Phyra71060;constitutive=1;rank=4 scaffold_2 . CDS 74214 74282 . + 0 ID=Phyra71060;Parent=Phyra71060;rank=5 scaffold_2 . exon 74214 74282 . + . ID=Phyra71060.5;Parent=Phyra71060;constitutive=1;rank=5 scaffold_2 . CDS 74361 75239 . + 0 ID=Phyra71060;Parent=Phyra71060;rank=6 scaffold_2 . exon 74361 75239 . + . ID=Phyra71060.6;Parent=Phyra71060;constitutive=1;rank=6 scaffold_2 ensembl protein_coding_gene 70506 72755 . - . ID=Phyra72951;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000016;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 70506 72755 . - . ID=Phyra72951;Parent=Phyra72951;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 70506 72755 . - 0 ID=Phyra72951;Parent=Phyra72951;rank=1 scaffold_2 . exon 70506 72755 . - . ID=Phyra72951.1;Parent=Phyra72951;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 75387 77579 . - . ID=Phyra72953;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000018;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 75387 77579 . - . ID=Phyra72953;Parent=Phyra72953;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 75387 76155 . - 0 ID=Phyra72953;Parent=Phyra72953;rank=6 scaffold_2 . exon 75387 76155 . - . ID=Phyra72953.6;Parent=Phyra72953;constitutive=1;ensembl_phase=2;rank=6 scaffold_2 . CDS 76226 76320 . - 0 ID=Phyra72953;Parent=Phyra72953;rank=5 scaffold_2 . exon 76226 76320 . - . ID=Phyra72953.5;Parent=Phyra72953;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_2 . CDS 76386 76463 . - 0 ID=Phyra72953;Parent=Phyra72953;rank=4 scaffold_2 . exon 76386 76463 . - . ID=Phyra72953.4;Parent=Phyra72953;constitutive=1;rank=4 scaffold_2 . CDS 76522 76842 . - 0 ID=Phyra72953;Parent=Phyra72953;rank=3 scaffold_2 . exon 76522 76842 . - . ID=Phyra72953.3;Parent=Phyra72953;constitutive=1;rank=3 scaffold_2 . CDS 76897 77046 . - 0 ID=Phyra72953;Parent=Phyra72953;rank=2 scaffold_2 . exon 76897 77046 . - . ID=Phyra72953.2;Parent=Phyra72953;constitutive=1;rank=2 scaffold_2 . CDS 77109 77579 . - 0 ID=Phyra72953;Parent=Phyra72953;rank=1 scaffold_2 . exon 77109 77579 . - . ID=Phyra72953.1;Parent=Phyra72953;constitutive=1;rank=1 scaffold_2 . biological_region 81920 81925 0.999 + . logic_name=eponine scaffold_2 . biological_region 89389 89396 0.999 - . logic_name=eponine scaffold_2 . exon 80898 81086 . - . ID=Phyra44006.2;Parent=Phyra44006;constitutive=1;rank=2 scaffold_2 . exon 81173 81283 . - . ID=Phyra44006.1;Parent=Phyra44006;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 82633 84789 . - . ID=Phyra93399;biotype=protein_coding;external_name=C_scaffold_2000001;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 82633 84789 . - . ID=Phyra93399;Parent=Phyra93399;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 82633 83454 . - 0 ID=Phyra93399;Parent=Phyra93399;rank=3 scaffold_2 . exon 82633 83454 . - . ID=Phyra93399.3;Parent=Phyra93399;constitutive=1;rank=3 scaffold_2 . CDS 83518 83726 . - 0 ID=Phyra93399;Parent=Phyra93399;rank=2 scaffold_2 . exon 83518 83726 . - . ID=Phyra93399.2;Parent=Phyra93399;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 84078 84789 . - 0 ID=Phyra93399;Parent=Phyra93399;rank=1 scaffold_2 . exon 84078 84789 . - . ID=Phyra93399.1;Parent=Phyra93399;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 85109 88447 . + . ID=Phyra93400;biotype=protein_coding;external_name=C_scaffold_2000002;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 85109 88447 . + . ID=Phyra93400;Parent=Phyra93400;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 85109 85117 . + 0 ID=Phyra93400;Parent=Phyra93400;rank=1 scaffold_2 . exon 85109 85117 . + . ID=Phyra93400.1;Parent=Phyra93400;constitutive=1;rank=1 scaffold_2 . CDS 85197 85589 . + 0 ID=Phyra93400;Parent=Phyra93400;rank=2 scaffold_2 . exon 85197 85589 . + . ID=Phyra93400.2;Parent=Phyra93400;constitutive=1;rank=2 scaffold_2 . CDS 85748 85834 . + 0 ID=Phyra93400;Parent=Phyra93400;rank=3 scaffold_2 . exon 85748 85834 . + . ID=Phyra93400.3;Parent=Phyra93400;constitutive=1;rank=3 scaffold_2 . CDS 85941 86105 . + 0 ID=Phyra93400;Parent=Phyra93400;rank=4 scaffold_2 . exon 85941 86105 . + . ID=Phyra93400.4;Parent=Phyra93400;constitutive=1;rank=4 scaffold_2 . CDS 86291 86368 . + 0 ID=Phyra93400;Parent=Phyra93400;rank=5 scaffold_2 . exon 86291 86368 . + . ID=Phyra93400.5;Parent=Phyra93400;constitutive=1;rank=5 scaffold_2 . CDS 87594 87716 . + 0 ID=Phyra93400;Parent=Phyra93400;rank=6 scaffold_2 . exon 87594 87716 . + . ID=Phyra93400.6;Parent=Phyra93400;constitutive=1;rank=6 scaffold_2 . CDS 87788 88447 . + 0 ID=Phyra93400;Parent=Phyra93400;rank=7 scaffold_2 . exon 87788 88447 . + . ID=Phyra93400.7;Parent=Phyra93400;constitutive=1;rank=7 scaffold_2 . repeat_region 90732 90786 . ? . description=dust scaffold_2 . repeat_region 94534 94615 . ? . description=trf scaffold_2 . repeat_region 94647 94673 . ? . description=trf scaffold_2 . repeat_region 98118 98126 . ? . description=dust scaffold_2 . repeat_region 99716 99734 . ? . description=dust scaffold_2 ensembl pseudogene 99833 100754 . + . ID=Phyra44009;biotype=pseudogene;external_name=gwEuk.2.260.1;logic_name=jgi_phyra1 scaffold_2 ensembl pseudogene 99833 100754 . + . ID=Phyra44009;Parent=Phyra44009;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_2 . exon 99833 99865 . + . ID=Phyra44009.1;Parent=Phyra44009;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 89999 90733 . - . ID=Phyra72956;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000021;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 89999 90733 . - . ID=Phyra72956;Parent=Phyra72956;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 89999 90733 . - 0 ID=Phyra72956;Parent=Phyra72956;rank=1 scaffold_2 . exon 89999 90733 . - . ID=Phyra72956.1;Parent=Phyra72956;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 93520 95709 . + . ID=Phyra72958;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000023;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 93520 95709 . + . ID=Phyra72958;Parent=Phyra72958;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 93520 95709 . + 0 ID=Phyra72958;Parent=Phyra72958;rank=1 scaffold_2 . exon 93520 95709 . + . ID=Phyra72958.1;Parent=Phyra72958;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 96743 97681 . + . ID=Phyra72959;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000024;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 96743 97681 . + . ID=Phyra72959;Parent=Phyra72959;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 96743 97681 . + 0 ID=Phyra72959;Parent=Phyra72959;rank=1 scaffold_2 . exon 96743 97681 . + . ID=Phyra72959.1;Parent=Phyra72959;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 90860 92026 . - . ID=Phyra93402;biotype=protein_coding;external_name=C_scaffold_2000004;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 90860 92026 . - . ID=Phyra93402;Parent=Phyra93402;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 90860 90976 . - 0 ID=Phyra93402;Parent=Phyra93402;rank=2 scaffold_2 . exon 90860 90976 . - . ID=Phyra93402.2;Parent=Phyra93402;constitutive=1;rank=2 scaffold_2 . CDS 91061 92026 . - 0 ID=Phyra93402;Parent=Phyra93402;rank=1 scaffold_2 . exon 91061 92026 . - . ID=Phyra93402.1;Parent=Phyra93402;constitutive=1;rank=1 scaffold_2 . biological_region 100659 100662 0.999 + . logic_name=eponine scaffold_2 . biological_region 107744 107746 0.999 + . logic_name=eponine scaffold_2 . biological_region 107840 107846 0.999 - . logic_name=eponine scaffold_2 . biological_region 109427 109429 0.999 + . logic_name=eponine scaffold_2 . exon 99954 100058 . + . ID=Phyra44009.2;Parent=Phyra44009;constitutive=1;rank=2 scaffold_2 . exon 100155 100494 . + . ID=Phyra44009.3;Parent=Phyra44009;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . exon 100570 100754 . + . ID=Phyra44009.4;Parent=Phyra44009;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 ensembl protein_coding_gene 100934 101668 . + . ID=Phyra72961;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000026;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 100934 101668 . + . ID=Phyra72961;Parent=Phyra72961;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 100934 101668 . + 0 ID=Phyra72961;Parent=Phyra72961;rank=1 scaffold_2 . exon 100934 101668 . + . ID=Phyra72961.1;Parent=Phyra72961;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 101755 104531 . - . ID=Phyra72962;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000027;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 101755 104531 . - . ID=Phyra72962;Parent=Phyra72962;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 101755 104022 . - 0 ID=Phyra72962;Parent=Phyra72962;rank=2 scaffold_2 . exon 101755 104022 . - . ID=Phyra72962.2;Parent=Phyra72962;constitutive=1;rank=2 scaffold_2 . CDS 104187 104531 . - 0 ID=Phyra72962;Parent=Phyra72962;rank=1 scaffold_2 . exon 104187 104531 . - . ID=Phyra72962.1;Parent=Phyra72962;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 106183 107283 . - . ID=Phyra72964;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000029;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 106183 107283 . - . ID=Phyra72964;Parent=Phyra72964;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 106183 106263 . - 0 ID=Phyra72964;Parent=Phyra72964;rank=2 scaffold_2 . exon 106183 106263 . - . ID=Phyra72964.2;Parent=Phyra72964;constitutive=1;rank=2 scaffold_2 . CDS 106336 107283 . - 0 ID=Phyra72964;Parent=Phyra72964;rank=1 scaffold_2 . exon 106336 107283 . - . ID=Phyra72964.1;Parent=Phyra72964;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 109806 113584 . - . ID=Phyra72966;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000031;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 109806 113584 . - . ID=Phyra72966;Parent=Phyra72966;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 109806 110923 . - 0 ID=Phyra72966;Parent=Phyra72966;rank=3 scaffold_2 . exon 109806 110923 . - . ID=Phyra72966.3;Parent=Phyra72966;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 111185 112286 . - 0 ID=Phyra72966;Parent=Phyra72966;rank=2 scaffold_2 . CDS 112529 113584 . - 0 ID=Phyra72966;Parent=Phyra72966;rank=1 scaffold_2 ensembl protein_coding_gene 104765 105985 . + . ID=Phyra93405;biotype=protein_coding;external_name=C_scaffold_2000007;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 104765 105985 . + . ID=Phyra93405;Parent=Phyra93405;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 104765 104934 . + 0 ID=Phyra93405;Parent=Phyra93405;rank=1 scaffold_2 . exon 104765 104934 . + . ID=Phyra93405.1;Parent=Phyra93405;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 105024 105173 . + 0 ID=Phyra93405;Parent=Phyra93405;rank=2 scaffold_2 . exon 105024 105173 . + . ID=Phyra93405.2;Parent=Phyra93405;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 105259 105328 . + 0 ID=Phyra93405;Parent=Phyra93405;rank=3 scaffold_2 . exon 105259 105328 . + . ID=Phyra93405.3;Parent=Phyra93405;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 105350 105985 . + 0 ID=Phyra93405;Parent=Phyra93405;rank=4 scaffold_2 . exon 105350 105985 . + . ID=Phyra93405.4;Parent=Phyra93405;constitutive=1;rank=4 scaffold_2 ensembl protein_coding_gene 107595 109104 . - . ID=Phyra93407;biotype=protein_coding;external_name=C_scaffold_2000009;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 107595 109104 . - . ID=Phyra93407;Parent=Phyra93407;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 107595 108499 . - 0 ID=Phyra93407;Parent=Phyra93407;rank=2 scaffold_2 . exon 107595 108499 . - . ID=Phyra93407.2;Parent=Phyra93407;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 108573 109104 . - 0 ID=Phyra93407;Parent=Phyra93407;rank=1 scaffold_2 . exon 108573 109104 . - . ID=Phyra93407.1;Parent=Phyra93407;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . repeat_region 114451 114463 . ? . description=dust scaffold_2 . exon 111185 112286 . - . ID=Phyra72966.2;Parent=Phyra72966;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . exon 112529 113584 . - . ID=Phyra72966.1;Parent=Phyra72966;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 114548 115732 . + . ID=Phyra72967;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000032;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 114548 115732 . + . ID=Phyra72967;Parent=Phyra72967;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 114548 115732 . + 0 ID=Phyra72967;Parent=Phyra72967;rank=1 scaffold_2 . exon 114548 115732 . + . ID=Phyra72967.1;Parent=Phyra72967;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 116495 117703 . + . ID=Phyra72968;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000033;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 116495 117703 . + . ID=Phyra72968;Parent=Phyra72968;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 116495 117703 . + 0 ID=Phyra72968;Parent=Phyra72968;rank=1 scaffold_2 . exon 116495 117703 . + . ID=Phyra72968.1;Parent=Phyra72968;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 118908 120152 . + . ID=Phyra72969;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000034;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 118908 120152 . + . ID=Phyra72969;Parent=Phyra72969;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 118908 120152 . + 0 ID=Phyra72969;Parent=Phyra72969;rank=1 scaffold_2 . exon 118908 120152 . + . ID=Phyra72969.1;Parent=Phyra72969;constitutive=1;rank=1 scaffold_2 . biological_region 122065 122070 0.999 - . logic_name=eponine scaffold_2 . biological_region 127233 127240 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 125694 126903 . - . ID=Phyra44026;biotype=protein_coding;external_name=gwEuk.2.277.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 125694 126903 . - . ID=Phyra44026;Parent=Phyra44026;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 125694 126723 . - 0 ID=Phyra44026;Parent=Phyra44026;rank=2 scaffold_2 . exon 125694 126723 . - . ID=Phyra44026.2;Parent=Phyra44026;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 126806 126903 . - 0 ID=Phyra44026;Parent=Phyra44026;rank=1 scaffold_2 . exon 126806 126903 . - . ID=Phyra44026.1;Parent=Phyra44026;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 120860 122254 . + . ID=Phyra72970;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000035;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 120860 122254 . + . ID=Phyra72970;Parent=Phyra72970;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 120860 122254 . + 0 ID=Phyra72970;Parent=Phyra72970;rank=1 scaffold_2 . exon 120860 122254 . + . ID=Phyra72970.1;Parent=Phyra72970;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 122404 123525 . - . ID=Phyra72971;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000036;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 122404 123525 . - . ID=Phyra72971;Parent=Phyra72971;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 122404 123525 . - 0 ID=Phyra72971;Parent=Phyra72971;rank=1 scaffold_2 . exon 122404 123525 . - . ID=Phyra72971.1;Parent=Phyra72971;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 127232 129779 . - . ID=Phyra72973;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000038;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 127232 129779 . - . ID=Phyra72973;Parent=Phyra72973;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 127232 128195 . - 0 ID=Phyra72973;Parent=Phyra72973;rank=3 scaffold_2 . exon 127232 128195 . - . ID=Phyra72973.3;Parent=Phyra72973;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 128277 128340 . - 0 ID=Phyra72973;Parent=Phyra72973;rank=2 scaffold_2 . exon 128277 128340 . - . ID=Phyra72973.2;Parent=Phyra72973;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 128408 129779 . - 0 ID=Phyra72973;Parent=Phyra72973;rank=1 scaffold_2 . exon 128408 129779 . - . ID=Phyra72973.1;Parent=Phyra72973;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . repeat_region 130820 130827 . ? . description=dust scaffold_2 ensembl protein_coding_gene 131753 139386 . + . ID=Phyra93408;biotype=protein_coding;external_name=C_scaffold_2000010;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 131753 139386 . + . ID=Phyra93408;Parent=Phyra93408;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 131753 131772 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=1 scaffold_2 . exon 131753 131772 . + . ID=Phyra93408.1;Parent=Phyra93408;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 132003 132705 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=2 scaffold_2 . exon 132003 132705 . + . ID=Phyra93408.2;Parent=Phyra93408;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 132780 132786 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=3 scaffold_2 . exon 132780 132786 . + . ID=Phyra93408.3;Parent=Phyra93408;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 132878 132941 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=4 scaffold_2 . exon 132878 132941 . + . ID=Phyra93408.4;Parent=Phyra93408;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_2 . CDS 133536 133766 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=5 scaffold_2 . exon 133536 133766 . + . ID=Phyra93408.5;Parent=Phyra93408;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_2 . CDS 133977 134216 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=6 scaffold_2 . exon 133977 134216 . + . ID=Phyra93408.6;Parent=Phyra93408;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_2 . CDS 134352 134449 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=7 scaffold_2 . exon 134352 134449 . + . ID=Phyra93408.7;Parent=Phyra93408;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_2 . CDS 134675 135074 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=8 scaffold_2 . exon 134675 135074 . + . ID=Phyra93408.8;Parent=Phyra93408;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_2 . CDS 135435 135643 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=9 scaffold_2 . exon 135435 135643 . + . ID=Phyra93408.9;Parent=Phyra93408;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_2 . CDS 136109 136237 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=10 scaffold_2 . exon 136109 136237 . + . ID=Phyra93408.10;Parent=Phyra93408;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_2 . CDS 136661 136840 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=11 scaffold_2 . exon 136661 136840 . + . ID=Phyra93408.11;Parent=Phyra93408;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_2 . CDS 136988 137167 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=12 scaffold_2 . exon 136988 137167 . + . ID=Phyra93408.12;Parent=Phyra93408;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_2 . CDS 137300 137707 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=13 scaffold_2 . exon 137300 137707 . + . ID=Phyra93408.13;Parent=Phyra93408;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_2 . CDS 137801 137890 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=14 scaffold_2 . exon 137801 137890 . + . ID=Phyra93408.14;Parent=Phyra93408;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_2 . CDS 137930 138028 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=15 scaffold_2 . exon 137930 138028 . + . ID=Phyra93408.15;Parent=Phyra93408;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=15 scaffold_2 . CDS 138086 138220 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=16 scaffold_2 . exon 138086 138220 . + . ID=Phyra93408.16;Parent=Phyra93408;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=16 scaffold_2 . CDS 138248 138807 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=17 scaffold_2 . exon 138248 138807 . + . ID=Phyra93408.17;Parent=Phyra93408;constitutive=1;ensembl_phase=1;rank=17 scaffold_2 . CDS 138979 139386 . + 0 ID=Phyra93408;Parent=Phyra93408;rank=18 scaffold_2 . exon 138979 139386 . + . ID=Phyra93408.18;Parent=Phyra93408;constitutive=1;rank=18 scaffold_2 . biological_region 144785 144785 0.999 + . logic_name=eponine scaffold_2 . biological_region 149843 149849 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 143392 146068 . - . ID=Phyra72977;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000042;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 143392 146068 . - . ID=Phyra72977;Parent=Phyra72977;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 143392 145229 . - 0 ID=Phyra72977;Parent=Phyra72977;rank=4 scaffold_2 . exon 143392 145229 . - . ID=Phyra72977.4;Parent=Phyra72977;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 145307 145517 . - 0 ID=Phyra72977;Parent=Phyra72977;rank=3 scaffold_2 . exon 145307 145517 . - . ID=Phyra72977.3;Parent=Phyra72977;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 145812 145907 . - 0 ID=Phyra72977;Parent=Phyra72977;rank=2 scaffold_2 . exon 145812 145907 . - . ID=Phyra72977.2;Parent=Phyra72977;constitutive=1;rank=2 scaffold_2 . CDS 145976 146068 . - 0 ID=Phyra72977;Parent=Phyra72977;rank=1 scaffold_2 . exon 145976 146068 . - . ID=Phyra72977.1;Parent=Phyra72977;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 147225 147889 . + . ID=Phyra93409;biotype=protein_coding;external_name=C_scaffold_2000011;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 147225 147889 . + . ID=Phyra93409;Parent=Phyra93409;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 147225 147575 . + 0 ID=Phyra93409;Parent=Phyra93409;rank=1 scaffold_2 . exon 147225 147575 . + . ID=Phyra93409.1;Parent=Phyra93409;constitutive=1;rank=1 scaffold_2 . CDS 147773 147889 . + 0 ID=Phyra93409;Parent=Phyra93409;rank=2 scaffold_2 . exon 147773 147889 . + . ID=Phyra93409.2;Parent=Phyra93409;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 148821 149771 . + . ID=Phyra93410;biotype=protein_coding;external_name=C_scaffold_2000012;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 148821 149771 . + . ID=Phyra93410;Parent=Phyra93410;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 148821 149069 . + 0 ID=Phyra93410;Parent=Phyra93410;rank=1 scaffold_2 . exon 148821 149069 . + . ID=Phyra93410.1;Parent=Phyra93410;constitutive=1;rank=1 scaffold_2 . CDS 149142 149624 . + 0 ID=Phyra93410;Parent=Phyra93410;rank=2 scaffold_2 . exon 149142 149624 . + . ID=Phyra93410.2;Parent=Phyra93410;constitutive=1;rank=2 scaffold_2 . CDS 149703 149771 . + 0 ID=Phyra93410;Parent=Phyra93410;rank=3 scaffold_2 . exon 149703 149771 . + . ID=Phyra93410.3;Parent=Phyra93410;constitutive=1;rank=3 scaffold_2 . repeat_region 150587 150660 . ? . description=trf scaffold_2 . repeat_region 150640 150688 . ? . description=trf scaffold_2 . repeat_region 150684 150733 . ? . description=trf scaffold_2 . repeat_region 150746 150805 . ? . description=trf scaffold_2 . repeat_region 157092 157099 . ? . description=dust scaffold_2 ensembl protein_coding_gene 150068 151423 . - . ID=Phyra72979;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000044;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 150068 151423 . - . ID=Phyra72979;Parent=Phyra72979;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 150068 151423 . - 0 ID=Phyra72979;Parent=Phyra72979;rank=1 scaffold_2 . exon 150068 151423 . - . ID=Phyra72979.1;Parent=Phyra72979;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 152570 154252 . - . ID=Phyra72980;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000045;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 152570 154252 . - . ID=Phyra72980;Parent=Phyra72980;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 152570 154252 . - 0 ID=Phyra72980;Parent=Phyra72980;rank=1 scaffold_2 . exon 152570 154252 . - . ID=Phyra72980.1;Parent=Phyra72980;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 155623 156750 . - . ID=Phyra72981;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000046;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 155623 156750 . - . ID=Phyra72981;Parent=Phyra72981;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 155623 156750 . - 0 ID=Phyra72981;Parent=Phyra72981;rank=1 scaffold_2 . exon 155623 156750 . - . ID=Phyra72981.1;Parent=Phyra72981;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 157374 159692 . - . ID=Phyra72982;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000047;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 157374 159692 . - . ID=Phyra72982;Parent=Phyra72982;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 157374 159692 . - 0 ID=Phyra72982;Parent=Phyra72982;rank=1 scaffold_2 . exon 157374 159692 . - . ID=Phyra72982.1;Parent=Phyra72982;constitutive=1;rank=1 scaffold_2 . biological_region 161905 161908 0.999 + . logic_name=eponine scaffold_2 . biological_region 164038 164039 0.999 + . logic_name=eponine scaffold_2 . biological_region 164088 164092 0.999 - . logic_name=eponine scaffold_2 . biological_region 164267 164269 0.999 - . logic_name=eponine scaffold_2 . biological_region 164677 164680 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 164432 166201 . + . ID=Phyra71061;biotype=protein_coding;description=Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL%3BAcc:A7XL07];external_name=TIGA;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 164432 166201 . + . ID=Phyra71061;Parent=Phyra71061;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 164432 166201 . + 0 ID=Phyra71061;Parent=Phyra71061;rank=1 scaffold_2 . exon 164432 166201 . + . ID=Phyra71061.1;Parent=Phyra71061;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 161881 163408 . + . ID=Phyra72983;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000048;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 161881 163408 . + . ID=Phyra72983;Parent=Phyra72983;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 161881 162056 . + 0 ID=Phyra72983;Parent=Phyra72983;rank=1 scaffold_2 . exon 161881 162056 . + . ID=Phyra72983.1;Parent=Phyra72983;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 162135 162243 . + 0 ID=Phyra72983;Parent=Phyra72983;rank=2 scaffold_2 . exon 162135 162243 . + . ID=Phyra72983.2;Parent=Phyra72983;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 162309 163103 . + 0 ID=Phyra72983;Parent=Phyra72983;rank=3 scaffold_2 . exon 162309 163103 . + . ID=Phyra72983.3;Parent=Phyra72983;constitutive=1;rank=3 scaffold_2 . CDS 163187 163408 . + 0 ID=Phyra72983;Parent=Phyra72983;rank=4 scaffold_2 . exon 163187 163408 . + . ID=Phyra72983.4;Parent=Phyra72983;constitutive=1;rank=4 scaffold_2 ensembl protein_coding_gene 167227 168180 . + . ID=Phyra72985;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000050;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 167227 168180 . + . ID=Phyra72985;Parent=Phyra72985;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 167227 168180 . + 0 ID=Phyra72985;Parent=Phyra72985;rank=1 scaffold_2 . exon 167227 168180 . + . ID=Phyra72985.1;Parent=Phyra72985;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 168249 169754 . - . ID=Phyra72986;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000051;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 168249 169754 . - . ID=Phyra72986;Parent=Phyra72986;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 168249 169754 . - 0 ID=Phyra72986;Parent=Phyra72986;rank=1 scaffold_2 . exon 168249 169754 . - . ID=Phyra72986.1;Parent=Phyra72986;constitutive=1;rank=1 scaffold_2 . repeat_region 170711 170718 . ? . description=dust scaffold_2 . repeat_region 178893 179298 . ? . description=trf scaffold_2 ensembl protein_coding_gene 173705 174733 . - . ID=Phyra44042;biotype=protein_coding;external_name=gwEuk.2.293.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 173705 174733 . - . ID=Phyra44042;Parent=Phyra44042;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 173705 174623 . - 0 ID=Phyra44042;Parent=Phyra44042;rank=2 scaffold_2 . exon 173705 174623 . - . ID=Phyra44042.2;Parent=Phyra44042;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 174696 174733 . - 0 ID=Phyra44042;Parent=Phyra44042;rank=1 scaffold_2 . exon 174696 174733 . - . ID=Phyra44042.1;Parent=Phyra44042;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 170849 172549 . + . ID=Phyra72987;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000052;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 170849 172549 . + . ID=Phyra72987;Parent=Phyra72987;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 170849 172549 . + 0 ID=Phyra72987;Parent=Phyra72987;rank=1 scaffold_2 . exon 170849 172549 . + . ID=Phyra72987.1;Parent=Phyra72987;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 175180 176934 . + . ID=Phyra72989;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000054;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 175180 176934 . + . ID=Phyra72989;Parent=Phyra72989;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 175180 176934 . + 0 ID=Phyra72989;Parent=Phyra72989;rank=1 scaffold_2 . exon 175180 176934 . + . ID=Phyra72989.1;Parent=Phyra72989;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 177015 186086 . - . ID=Phyra72990;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000055;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 177015 186086 . - . ID=Phyra72990;Parent=Phyra72990;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 177015 177127 . - 0 ID=Phyra72990;Parent=Phyra72990;rank=3 scaffold_2 . exon 177015 177127 . - . ID=Phyra72990.3;Parent=Phyra72990;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 177302 177694 . - 0 ID=Phyra72990;Parent=Phyra72990;rank=2 scaffold_2 . exon 177302 177694 . - . ID=Phyra72990.2;Parent=Phyra72990;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 177803 186086 . - 0 ID=Phyra72990;Parent=Phyra72990;rank=1 scaffold_2 . exon 177803 186086 . - . ID=Phyra72990.1;Parent=Phyra72990;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . biological_region 185001 185006 0.999 + . logic_name=eponine scaffold_2 . biological_region 185010 185013 0.999 + . logic_name=eponine scaffold_2 . biological_region 185023 185024 0.999 + . logic_name=eponine scaffold_2 . biological_region 185082 185084 0.999 + . logic_name=eponine scaffold_2 . biological_region 185123 185125 0.999 + . logic_name=eponine scaffold_2 . biological_region 185125 185127 0.999 - . logic_name=eponine scaffold_2 . biological_region 185602 185604 0.999 + . logic_name=eponine scaffold_2 . biological_region 185616 185620 0.999 + . logic_name=eponine scaffold_2 . biological_region 185643 185649 0.999 + . logic_name=eponine scaffold_2 . biological_region 185664 185667 0.999 + . logic_name=eponine scaffold_2 . biological_region 185680 185688 0.999 + . logic_name=eponine scaffold_2 . biological_region 185680 185690 0.999 - . logic_name=eponine scaffold_2 . biological_region 185709 185711 0.999 + . logic_name=eponine scaffold_2 . biological_region 185732 185737 0.999 - . logic_name=eponine scaffold_2 . biological_region 185747 185752 0.999 - . logic_name=eponine scaffold_2 . biological_region 185794 185798 0.999 - . logic_name=eponine scaffold_2 . biological_region 185811 185813 0.999 - . logic_name=eponine scaffold_2 . biological_region 185874 185876 0.999 - . logic_name=eponine scaffold_2 . biological_region 185940 185949 0.999 - . logic_name=eponine scaffold_2 . biological_region 186673 186675 0.999 + . logic_name=eponine scaffold_2 . biological_region 186984 186987 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 188888 192876 . - . ID=Phyra44043;biotype=protein_coding;external_name=gwEuk.2.294.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 188888 192876 . - . ID=Phyra44043;Parent=Phyra44043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 188888 189957 . - 0 ID=Phyra44043;Parent=Phyra44043;rank=3 scaffold_2 . exon 188888 189957 . - . ID=Phyra44043.3;Parent=Phyra44043;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 190036 192703 . - 0 ID=Phyra44043;Parent=Phyra44043;rank=2 scaffold_2 . CDS 192790 192876 . - 0 ID=Phyra44043;Parent=Phyra44043;rank=1 scaffold_2 ensembl protein_coding_gene 186878 187537 . + . ID=Phyra72991;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000056;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 186878 187537 . + . ID=Phyra72991;Parent=Phyra72991;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 186878 187537 . + 0 ID=Phyra72991;Parent=Phyra72991;rank=1 scaffold_2 . exon 186878 187537 . + . ID=Phyra72991.1;Parent=Phyra72991;constitutive=1;rank=1 scaffold_2 . exon 190036 192703 . - . ID=Phyra44043.2;Parent=Phyra44043;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . exon 192790 192876 . - . ID=Phyra44043.1;Parent=Phyra44043;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 193465 194940 . - . ID=Phyra72993;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000058;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 193465 194940 . - . ID=Phyra72993;Parent=Phyra72993;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 193465 194940 . - 0 ID=Phyra72993;Parent=Phyra72993;rank=1 scaffold_2 . exon 193465 194940 . - . ID=Phyra72993.1;Parent=Phyra72993;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 195265 196641 . + . ID=Phyra72994;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000059;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 195265 196641 . + . ID=Phyra72994;Parent=Phyra72994;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 195265 196641 . + 0 ID=Phyra72994;Parent=Phyra72994;rank=1 scaffold_2 . exon 195265 196641 . + . ID=Phyra72994.1;Parent=Phyra72994;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 196867 197820 . + . ID=Phyra72995;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000060;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 196867 197820 . + . ID=Phyra72995;Parent=Phyra72995;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 196867 197820 . + 0 ID=Phyra72995;Parent=Phyra72995;rank=1 scaffold_2 . exon 196867 197820 . + . ID=Phyra72995.1;Parent=Phyra72995;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 199823 201026 . + . ID=Phyra72997;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000062;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 199823 201026 . + . ID=Phyra72997;Parent=Phyra72997;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 199823 200095 . + 0 ID=Phyra72997;Parent=Phyra72997;rank=1 scaffold_2 . exon 199823 200095 . + . ID=Phyra72997.1;Parent=Phyra72997;constitutive=1;rank=1 scaffold_2 . CDS 200155 200447 . + 0 ID=Phyra72997;Parent=Phyra72997;rank=2 scaffold_2 . CDS 200511 200645 . + 0 ID=Phyra72997;Parent=Phyra72997;rank=3 scaffold_2 . CDS 200720 201026 . + 0 ID=Phyra72997;Parent=Phyra72997;rank=4 scaffold_2 ensembl protein_coding_gene 197970 199701 . + . ID=Phyra93417;biotype=protein_coding;external_name=C_scaffold_2000019;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 197970 199701 . + . ID=Phyra93417;Parent=Phyra93417;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 197970 198103 . + 0 ID=Phyra93417;Parent=Phyra93417;rank=1 scaffold_2 . exon 197970 198103 . + . ID=Phyra93417.1;Parent=Phyra93417;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 198202 198220 . + 0 ID=Phyra93417;Parent=Phyra93417;rank=2 scaffold_2 . exon 198202 198220 . + . ID=Phyra93417.2;Parent=Phyra93417;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 198290 198390 . + 0 ID=Phyra93417;Parent=Phyra93417;rank=3 scaffold_2 . exon 198290 198390 . + . ID=Phyra93417.3;Parent=Phyra93417;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 198459 198552 . + 0 ID=Phyra93417;Parent=Phyra93417;rank=4 scaffold_2 . exon 198459 198552 . + . ID=Phyra93417.4;Parent=Phyra93417;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 198616 198705 . + 0 ID=Phyra93417;Parent=Phyra93417;rank=5 scaffold_2 . exon 198616 198705 . + . ID=Phyra93417.5;Parent=Phyra93417;constitutive=1;rank=5 scaffold_2 . CDS 198794 198930 . + 0 ID=Phyra93417;Parent=Phyra93417;rank=6 scaffold_2 . exon 198794 198930 . + . ID=Phyra93417.6;Parent=Phyra93417;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_2 . CDS 199090 199157 . + 0 ID=Phyra93417;Parent=Phyra93417;rank=7 scaffold_2 . exon 199090 199157 . + . ID=Phyra93417.7;Parent=Phyra93417;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_2 . CDS 199255 199460 . + 0 ID=Phyra93417;Parent=Phyra93417;rank=8 scaffold_2 . exon 199255 199460 . + . ID=Phyra93417.8;Parent=Phyra93417;constitutive=1;ensembl_phase=1;rank=8 scaffold_2 . CDS 199552 199701 . + 0 ID=Phyra93417;Parent=Phyra93417;rank=9 scaffold_2 . exon 199552 199701 . + . ID=Phyra93417.9;Parent=Phyra93417;constitutive=1;rank=9 scaffold_2 . biological_region 200043 200048 0.999 - . logic_name=eponine scaffold_2 . biological_region 202385 202387 0.999 - . logic_name=eponine scaffold_2 . biological_region 204705 204709 0.999 + . logic_name=eponine scaffold_2 . biological_region 206150 206155 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 202149 204839 . + . ID=Phyra71064;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000005;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 202149 204839 . + . ID=Phyra71064;Parent=Phyra71064;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 202149 204358 . + 0 ID=Phyra71064;Parent=Phyra71064;rank=1 scaffold_2 . exon 202149 204358 . + . ID=Phyra71064.1;Parent=Phyra71064;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 204413 204839 . + 0 ID=Phyra71064;Parent=Phyra71064;rank=2 scaffold_2 . exon 204413 204839 . + . ID=Phyra71064.2;Parent=Phyra71064;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 ensembl protein_coding_gene 205166 206324 . + . ID=Phyra71065;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000006;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 205166 206324 . + . ID=Phyra71065;Parent=Phyra71065;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 205166 205376 . + 0 ID=Phyra71065;Parent=Phyra71065;rank=1 scaffold_2 . exon 205166 205376 . + . ID=Phyra71065.1;Parent=Phyra71065;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 205436 205504 . + 0 ID=Phyra71065;Parent=Phyra71065;rank=2 scaffold_2 . exon 205436 205504 . + . ID=Phyra71065.2;Parent=Phyra71065;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 205576 206324 . + 0 ID=Phyra71065;Parent=Phyra71065;rank=3 scaffold_2 . exon 205576 206324 . + . ID=Phyra71065.3;Parent=Phyra71065;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . exon 200155 200447 . + . ID=Phyra72997.2;Parent=Phyra72997;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . exon 200511 200645 . + . ID=Phyra72997.3;Parent=Phyra72997;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_2 . exon 200720 201026 . + . ID=Phyra72997.4;Parent=Phyra72997;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 ensembl protein_coding_gene 201097 201867 . - . ID=Phyra72998;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000063;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 201097 201867 . - . ID=Phyra72998;Parent=Phyra72998;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 201097 201867 . - 0 ID=Phyra72998;Parent=Phyra72998;rank=1 scaffold_2 . exon 201097 201867 . - . ID=Phyra72998.1;Parent=Phyra72998;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 207829 209383 . + . ID=Phyra93419;biotype=protein_coding;external_name=C_scaffold_2000021;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 207829 209383 . + . ID=Phyra93419;Parent=Phyra93419;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 207829 208035 . + 0 ID=Phyra93419;Parent=Phyra93419;rank=1 scaffold_2 . exon 207829 208035 . + . ID=Phyra93419.1;Parent=Phyra93419;constitutive=1;rank=1 scaffold_2 . CDS 208090 208175 . + 0 ID=Phyra93419;Parent=Phyra93419;rank=2 scaffold_2 . exon 208090 208175 . + . ID=Phyra93419.2;Parent=Phyra93419;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 208265 208347 . + 0 ID=Phyra93419;Parent=Phyra93419;rank=3 scaffold_2 . exon 208265 208347 . + . ID=Phyra93419.3;Parent=Phyra93419;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 208416 208632 . + 0 ID=Phyra93419;Parent=Phyra93419;rank=4 scaffold_2 . exon 208416 208632 . + . ID=Phyra93419.4;Parent=Phyra93419;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_2 . CDS 208711 209383 . + 0 ID=Phyra93419;Parent=Phyra93419;rank=5 scaffold_2 . exon 208711 209383 . + . ID=Phyra93419.5;Parent=Phyra93419;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . repeat_region 214351 214380 . ? . description=trf scaffold_2 . repeat_region 219829 219869 . ? . description=trf scaffold_2 ensembl protein_coding_gene 212520 213674 . + . ID=Phyra73003;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000068;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 212520 213674 . + . ID=Phyra73003;Parent=Phyra73003;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 212520 213674 . + 0 ID=Phyra73003;Parent=Phyra73003;rank=1 scaffold_2 . exon 212520 213674 . + . ID=Phyra73003.1;Parent=Phyra73003;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 214393 219571 . - . ID=Phyra73004;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000069;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 214393 219571 . - . ID=Phyra73004;Parent=Phyra73004;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 214393 215608 . - 0 ID=Phyra73004;Parent=Phyra73004;rank=2 scaffold_2 . exon 214393 215608 . - . ID=Phyra73004.2;Parent=Phyra73004;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 215724 219571 . - 0 ID=Phyra73004;Parent=Phyra73004;rank=1 scaffold_2 . exon 215724 219571 . - . ID=Phyra73004.1;Parent=Phyra73004;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 211072 212262 . - . ID=Phyra93420;biotype=protein_coding;external_name=C_scaffold_2000022;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 211072 212262 . - . ID=Phyra93420;Parent=Phyra93420;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 211072 212262 . - 0 ID=Phyra93420;Parent=Phyra93420;rank=1 scaffold_2 . exon 211072 212262 . - . ID=Phyra93420.1;Parent=Phyra93420;constitutive=1;rank=1 scaffold_2 . biological_region 220514 220516 0.999 + . logic_name=eponine scaffold_2 . biological_region 220634 220638 0.999 - . logic_name=eponine scaffold_2 . repeat_region 229471 229485 . ? . description=dust scaffold_2 ensembl protein_coding_gene 227931 229254 . + . ID=Phyra43763;biotype=protein_coding;external_name=gwEuk.2.14.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 227931 229254 . + . ID=Phyra43763;Parent=Phyra43763;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 227931 228039 . + 0 ID=Phyra43763;Parent=Phyra43763;rank=1 scaffold_2 . exon 227931 228039 . + . ID=Phyra43763.1;Parent=Phyra43763;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 228108 228262 . + 0 ID=Phyra43763;Parent=Phyra43763;rank=2 scaffold_2 . exon 228108 228262 . + . ID=Phyra43763.2;Parent=Phyra43763;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 228340 229254 . + 0 ID=Phyra43763;Parent=Phyra43763;rank=3 scaffold_2 . exon 228340 229254 . + . ID=Phyra43763.3;Parent=Phyra43763;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 222093 223223 . - . ID=Phyra73006;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000071;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 222093 223223 . - . ID=Phyra73006;Parent=Phyra73006;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 222093 223223 . - 0 ID=Phyra73006;Parent=Phyra73006;rank=1 scaffold_2 . exon 222093 223223 . - . ID=Phyra73006.1;Parent=Phyra73006;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 223966 226270 . + . ID=Phyra73007;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000072;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 223966 226270 . + . ID=Phyra73007;Parent=Phyra73007;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 223966 224018 . + 0 ID=Phyra73007;Parent=Phyra73007;rank=1 scaffold_2 . exon 223966 224018 . + . ID=Phyra73007.1;Parent=Phyra73007;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 224078 224384 . + 0 ID=Phyra73007;Parent=Phyra73007;rank=2 scaffold_2 . exon 224078 224384 . + . ID=Phyra73007.2;Parent=Phyra73007;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 224446 224532 . + 0 ID=Phyra73007;Parent=Phyra73007;rank=3 scaffold_2 . exon 224446 224532 . + . ID=Phyra73007.3;Parent=Phyra73007;constitutive=1;rank=3 scaffold_2 . CDS 224612 226270 . + 0 ID=Phyra73007;Parent=Phyra73007;rank=4 scaffold_2 . exon 224612 226270 . + . ID=Phyra73007.4;Parent=Phyra73007;constitutive=1;rank=4 scaffold_2 ensembl protein_coding_gene 226474 226875 . + . ID=Phyra73008;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000073;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 226474 226875 . + . ID=Phyra73008;Parent=Phyra73008;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 226474 226875 . + 0 ID=Phyra73008;Parent=Phyra73008;rank=1 scaffold_2 . exon 226474 226875 . + . ID=Phyra73008.1;Parent=Phyra73008;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 229487 236411 . - . ID=Phyra73010;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000075;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 229487 236411 . - . ID=Phyra73010;Parent=Phyra73010;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 229487 229578 . - 0 ID=Phyra73010;Parent=Phyra73010;rank=4 scaffold_2 . exon 229487 229578 . - . ID=Phyra73010.4;Parent=Phyra73010;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 229643 229714 . - 0 ID=Phyra73010;Parent=Phyra73010;rank=3 scaffold_2 . exon 229643 229714 . - . ID=Phyra73010.3;Parent=Phyra73010;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 229788 236250 . - 0 ID=Phyra73010;Parent=Phyra73010;rank=2 scaffold_2 . exon 229788 236250 . - . ID=Phyra73010.2;Parent=Phyra73010;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 236331 236411 . - 0 ID=Phyra73010;Parent=Phyra73010;rank=1 scaffold_2 ensembl protein_coding_gene 219881 220729 . + . ID=Phyra93423;biotype=protein_coding;external_name=C_scaffold_2000025;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 219881 220729 . + . ID=Phyra93423;Parent=Phyra93423;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 219881 219924 . + 0 ID=Phyra93423;Parent=Phyra93423;rank=1 scaffold_2 . exon 219881 219924 . + . ID=Phyra93423.1;Parent=Phyra93423;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 219983 220121 . + 0 ID=Phyra93423;Parent=Phyra93423;rank=2 scaffold_2 . exon 219983 220121 . + . ID=Phyra93423.2;Parent=Phyra93423;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 220384 220467 . + 0 ID=Phyra93423;Parent=Phyra93423;rank=3 scaffold_2 . exon 220384 220467 . + . ID=Phyra93423.3;Parent=Phyra93423;constitutive=1;rank=3 scaffold_2 . CDS 220538 220729 . + 0 ID=Phyra93423;Parent=Phyra93423;rank=4 scaffold_2 . exon 220538 220729 . + . ID=Phyra93423.4;Parent=Phyra93423;constitutive=1;rank=4 scaffold_2 . exon 236331 236411 . - . ID=Phyra73010.1;Parent=Phyra73010;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 236681 237682 . - . ID=Phyra73011;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000076;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 236681 237682 . - . ID=Phyra73011;Parent=Phyra73011;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 236681 237682 . - 0 ID=Phyra73011;Parent=Phyra73011;rank=1 scaffold_2 . exon 236681 237682 . - . ID=Phyra73011.1;Parent=Phyra73011;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 238028 239524 . + . ID=Phyra73012;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000077;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 238028 239524 . + . ID=Phyra73012;Parent=Phyra73012;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 238028 239155 . + 0 ID=Phyra73012;Parent=Phyra73012;rank=1 scaffold_2 . exon 238028 239155 . + . ID=Phyra73012.1;Parent=Phyra73012;constitutive=1;rank=1 scaffold_2 . CDS 239231 239524 . + 0 ID=Phyra73012;Parent=Phyra73012;rank=2 scaffold_2 . exon 239231 239524 . + . ID=Phyra73012.2;Parent=Phyra73012;constitutive=1;rank=2 scaffold_2 . biological_region 240154 240154 0.999 + . logic_name=eponine scaffold_2 . biological_region 240696 240702 0.999 - . logic_name=eponine scaffold_2 . biological_region 240754 240757 0.999 + . logic_name=eponine scaffold_2 . biological_region 240775 240780 0.999 - . logic_name=eponine scaffold_2 . biological_region 241018 241024 0.999 + . logic_name=eponine scaffold_2 . biological_region 241056 241059 0.999 + . logic_name=eponine scaffold_2 . biological_region 241132 241133 0.999 + . logic_name=eponine scaffold_2 . biological_region 241363 241370 0.999 + . logic_name=eponine scaffold_2 . biological_region 241395 241397 0.999 + . logic_name=eponine scaffold_2 . biological_region 241466 241474 0.999 - . logic_name=eponine scaffold_2 . biological_region 241520 241524 0.999 - . logic_name=eponine scaffold_2 . biological_region 241545 241553 0.999 + . logic_name=eponine scaffold_2 . biological_region 241711 241717 0.999 - . logic_name=eponine scaffold_2 . biological_region 241948 241951 0.999 - . logic_name=eponine scaffold_2 . biological_region 242448 242450 0.999 - . logic_name=eponine scaffold_2 . biological_region 242940 242941 0.999 + . logic_name=eponine scaffold_2 . biological_region 242963 242965 0.999 + . logic_name=eponine scaffold_2 . biological_region 242973 242977 0.999 + . logic_name=eponine scaffold_2 . biological_region 242992 242996 0.999 + . logic_name=eponine scaffold_2 . biological_region 243008 243015 0.999 - . logic_name=eponine scaffold_2 . biological_region 243091 243098 0.999 + . logic_name=eponine scaffold_2 . biological_region 243120 243123 0.999 + . logic_name=eponine scaffold_2 . biological_region 243143 243144 0.999 + . logic_name=eponine scaffold_2 . biological_region 243171 243176 0.999 - . logic_name=eponine scaffold_2 . biological_region 243436 243444 0.999 - . logic_name=eponine scaffold_2 . biological_region 243457 243460 0.999 + . logic_name=eponine scaffold_2 . biological_region 243495 243498 0.999 + . logic_name=eponine scaffold_2 . biological_region 243769 243776 0.999 - . logic_name=eponine scaffold_2 . biological_region 243787 243793 0.999 - . logic_name=eponine scaffold_2 . biological_region 243844 243848 0.999 + . logic_name=eponine scaffold_2 . biological_region 243954 243955 0.999 - . logic_name=eponine scaffold_2 . biological_region 244072 244075 0.999 + . logic_name=eponine scaffold_2 . biological_region 244087 244094 0.999 + . logic_name=eponine scaffold_2 . biological_region 244154 244160 0.999 - . logic_name=eponine scaffold_2 . biological_region 244422 244425 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 241847 242602 . + . ID=Phyra73013;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000078;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 241847 242602 . + . ID=Phyra73013;Parent=Phyra73013;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 241847 242602 . + 0 ID=Phyra73013;Parent=Phyra73013;rank=1 scaffold_2 . exon 241847 242602 . + . ID=Phyra73013.1;Parent=Phyra73013;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 248523 250539 . + . ID=Phyra73016;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000081;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 248523 250539 . + . ID=Phyra73016;Parent=Phyra73016;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 248523 248729 . + 0 ID=Phyra73016;Parent=Phyra73016;rank=1 scaffold_2 . exon 248523 248729 . + . ID=Phyra73016.1;Parent=Phyra73016;constitutive=1;rank=1 scaffold_2 . CDS 248851 249408 . + 0 ID=Phyra73016;Parent=Phyra73016;rank=2 scaffold_2 . exon 248851 249408 . + . ID=Phyra73016.2;Parent=Phyra73016;constitutive=1;rank=2 scaffold_2 . CDS 249464 249521 . + 0 ID=Phyra73016;Parent=Phyra73016;rank=3 scaffold_2 . exon 249464 249521 . + . ID=Phyra73016.3;Parent=Phyra73016;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 249588 249964 . + 0 ID=Phyra73016;Parent=Phyra73016;rank=4 scaffold_2 . exon 249588 249964 . + . ID=Phyra73016.4;Parent=Phyra73016;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 250033 250539 . + 0 ID=Phyra73016;Parent=Phyra73016;rank=5 scaffold_2 ensembl protein_coding_gene 244023 247928 . - . ID=Phyra93424;biotype=protein_coding;external_name=C_scaffold_2000026;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 244023 247928 . - . ID=Phyra93424;Parent=Phyra93424;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 244023 244165 . - 0 ID=Phyra93424;Parent=Phyra93424;rank=9 scaffold_2 . exon 244023 244165 . - . ID=Phyra93424.9;Parent=Phyra93424;constitutive=1;ensembl_phase=1;rank=9 scaffold_2 . CDS 244262 245044 . - 0 ID=Phyra93424;Parent=Phyra93424;rank=8 scaffold_2 . exon 244262 245044 . - . ID=Phyra93424.8;Parent=Phyra93424;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_2 . CDS 245159 245236 . - 0 ID=Phyra93424;Parent=Phyra93424;rank=7 scaffold_2 . exon 245159 245236 . - . ID=Phyra93424.7;Parent=Phyra93424;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_2 . CDS 245465 245964 . - 0 ID=Phyra93424;Parent=Phyra93424;rank=6 scaffold_2 . exon 245465 245964 . - . ID=Phyra93424.6;Parent=Phyra93424;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_2 . CDS 246169 246272 . - 0 ID=Phyra93424;Parent=Phyra93424;rank=5 scaffold_2 . exon 246169 246272 . - . ID=Phyra93424.5;Parent=Phyra93424;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_2 . CDS 246570 246706 . - 0 ID=Phyra93424;Parent=Phyra93424;rank=4 scaffold_2 . exon 246570 246706 . - . ID=Phyra93424.4;Parent=Phyra93424;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 246905 247222 . - 0 ID=Phyra93424;Parent=Phyra93424;rank=3 scaffold_2 . exon 246905 247222 . - . ID=Phyra93424.3;Parent=Phyra93424;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 247268 247795 . - 0 ID=Phyra93424;Parent=Phyra93424;rank=2 scaffold_2 . exon 247268 247795 . - . ID=Phyra93424.2;Parent=Phyra93424;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 247823 247928 . - 0 ID=Phyra93424;Parent=Phyra93424;rank=1 scaffold_2 . exon 247823 247928 . - . ID=Phyra93424.1;Parent=Phyra93424;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 254598 254777 . + . ID=Phyra43769;biotype=protein_coding;external_name=gwEuk.2.20.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 254598 254777 . + . ID=Phyra43769;Parent=Phyra43769;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 254598 254777 . + 0 ID=Phyra43769;Parent=Phyra43769;rank=1 scaffold_2 . exon 254598 254777 . + . ID=Phyra43769.1;Parent=Phyra43769;constitutive=1;rank=1 scaffold_2 . exon 250033 250539 . + . ID=Phyra73016.5;Parent=Phyra73016;constitutive=1;rank=5 scaffold_2 ensembl protein_coding_gene 250742 252364 . - . ID=Phyra73017;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000082;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 250742 252364 . - . ID=Phyra73017;Parent=Phyra73017;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 250742 252127 . - 0 ID=Phyra73017;Parent=Phyra73017;rank=2 scaffold_2 . exon 250742 252127 . - . ID=Phyra73017.2;Parent=Phyra73017;constitutive=1;rank=2 scaffold_2 . CDS 252194 252364 . - 0 ID=Phyra73017;Parent=Phyra73017;rank=1 scaffold_2 . exon 252194 252364 . - . ID=Phyra73017.1;Parent=Phyra73017;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 252573 253619 . + . ID=Phyra73018;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000083;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 252573 253619 . + . ID=Phyra73018;Parent=Phyra73018;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 252573 253619 . + 0 ID=Phyra73018;Parent=Phyra73018;rank=1 scaffold_2 . exon 252573 253619 . + . ID=Phyra73018.1;Parent=Phyra73018;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 255117 259674 . + . ID=Phyra73019;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000084;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 255117 259674 . + . ID=Phyra73019;Parent=Phyra73019;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 255117 255241 . + 0 ID=Phyra73019;Parent=Phyra73019;rank=1 scaffold_2 . exon 255117 255241 . + . ID=Phyra73019.1;Parent=Phyra73019;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 255313 255427 . + 0 ID=Phyra73019;Parent=Phyra73019;rank=2 scaffold_2 . exon 255313 255427 . + . ID=Phyra73019.2;Parent=Phyra73019;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 255497 255574 . + 0 ID=Phyra73019;Parent=Phyra73019;rank=3 scaffold_2 . exon 255497 255574 . + . ID=Phyra73019.3;Parent=Phyra73019;constitutive=1;rank=3 scaffold_2 . CDS 255643 255858 . + 0 ID=Phyra73019;Parent=Phyra73019;rank=4 scaffold_2 . exon 255643 255858 . + . ID=Phyra73019.4;Parent=Phyra73019;constitutive=1;rank=4 scaffold_2 . CDS 255892 255945 . + 0 ID=Phyra73019;Parent=Phyra73019;rank=5 scaffold_2 . exon 255892 255945 . + . ID=Phyra73019.5;Parent=Phyra73019;constitutive=1;rank=5 scaffold_2 . CDS 256375 256378 . + 0 ID=Phyra73019;Parent=Phyra73019;rank=6 scaffold_2 . exon 256375 256378 . + . ID=Phyra73019.6;Parent=Phyra73019;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_2 . CDS 256445 256623 . + 0 ID=Phyra73019;Parent=Phyra73019;rank=7 scaffold_2 . exon 256445 256623 . + . ID=Phyra73019.7;Parent=Phyra73019;constitutive=1;ensembl_phase=1;rank=7 scaffold_2 . CDS 256732 256923 . + 0 ID=Phyra73019;Parent=Phyra73019;rank=8 scaffold_2 . exon 256732 256923 . + . ID=Phyra73019.8;Parent=Phyra73019;constitutive=1;rank=8 scaffold_2 . CDS 257314 259674 . + 0 ID=Phyra73019;Parent=Phyra73019;rank=9 scaffold_2 . exon 257314 259674 . + . ID=Phyra73019.9;Parent=Phyra73019;constitutive=1;rank=9 scaffold_2 . repeat_region 260198 260236 . ? . description=trf scaffold_2 . biological_region 260338 260342 0.999 + . logic_name=eponine scaffold_2 . biological_region 260355 260361 0.999 + . logic_name=eponine scaffold_2 . biological_region 260503 260505 0.999 - . logic_name=eponine scaffold_2 . biological_region 260789 260792 0.999 - . logic_name=eponine scaffold_2 . biological_region 263033 263036 0.999 - . logic_name=eponine scaffold_2 . biological_region 267745 267749 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 260401 262056 . + . ID=Phyra43770;biotype=protein_coding;external_name=gwEuk.2.21.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 260401 262056 . + . ID=Phyra43770;Parent=Phyra43770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 260401 260954 . + 0 ID=Phyra43770;Parent=Phyra43770;rank=1 scaffold_2 . exon 260401 260954 . + . ID=Phyra43770.1;Parent=Phyra43770;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 261045 261522 . + 0 ID=Phyra43770;Parent=Phyra43770;rank=2 scaffold_2 . exon 261045 261522 . + . ID=Phyra43770.2;Parent=Phyra43770;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 261568 262056 . + 0 ID=Phyra43770;Parent=Phyra43770;rank=3 scaffold_2 . exon 261568 262056 . + . ID=Phyra43770.3;Parent=Phyra43770;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 266956 268031 . - . ID=Phyra73021;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000086;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 266956 268031 . - . ID=Phyra73021;Parent=Phyra73021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 266956 267516 . - 0 ID=Phyra73021;Parent=Phyra73021;rank=2 scaffold_2 . exon 266956 267516 . - . ID=Phyra73021.2;Parent=Phyra73021;constitutive=1;rank=2 scaffold_2 . CDS 267600 268031 . - 0 ID=Phyra73021;Parent=Phyra73021;rank=1 scaffold_2 . exon 267600 268031 . - . ID=Phyra73021.1;Parent=Phyra73021;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 268425 269765 . + . ID=Phyra73022;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000087;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 268425 269765 . + . ID=Phyra73022;Parent=Phyra73022;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 268425 269765 . + 0 ID=Phyra73022;Parent=Phyra73022;rank=1 scaffold_2 . exon 268425 269765 . + . ID=Phyra73022.1;Parent=Phyra73022;constitutive=1;rank=1 scaffold_2 . repeat_region 277067 277098 . ? . description=dust scaffold_2 ensembl protein_coding_gene 270328 272019 . + . ID=Phyra43775;biotype=protein_coding;external_name=gwEuk.2.26.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 270328 272019 . + . ID=Phyra43775;Parent=Phyra43775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 270328 270900 . + 0 ID=Phyra43775;Parent=Phyra43775;rank=1 scaffold_2 . exon 270328 270900 . + . ID=Phyra43775.1;Parent=Phyra43775;constitutive=1;rank=1 scaffold_2 . CDS 271063 272019 . + 0 ID=Phyra43775;Parent=Phyra43775;rank=2 scaffold_2 . exon 271063 272019 . + . ID=Phyra43775.2;Parent=Phyra43775;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 273298 274008 . - . ID=Phyra73024;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000089;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 273298 274008 . - . ID=Phyra73024;Parent=Phyra73024;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 273298 274008 . - 0 ID=Phyra73024;Parent=Phyra73024;rank=1 scaffold_2 . exon 273298 274008 . - . ID=Phyra73024.1;Parent=Phyra73024;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 277104 277700 . + . ID=Phyra73025;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000090;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 277104 277700 . + . ID=Phyra73025;Parent=Phyra73025;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 277104 277700 . + 0 ID=Phyra73025;Parent=Phyra73025;rank=1 scaffold_2 . exon 277104 277700 . + . ID=Phyra73025.1;Parent=Phyra73025;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 279458 285280 . + . ID=Phyra73026;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000091;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 279458 285280 . + . ID=Phyra73026;Parent=Phyra73026;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 279458 285280 . + 0 ID=Phyra73026;Parent=Phyra73026;rank=1 scaffold_2 . exon 279458 285280 . + . ID=Phyra73026.1;Parent=Phyra73026;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 285403 290625 . - . ID=Phyra73027;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000092;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 285403 290625 . - . ID=Phyra73027;Parent=Phyra73027;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 285403 290400 . - 0 ID=Phyra73027;Parent=Phyra73027;rank=2 scaffold_2 . exon 285403 290400 . - . ID=Phyra73027.2;Parent=Phyra73027;constitutive=1;rank=2 scaffold_2 . CDS 290446 290625 . - 0 ID=Phyra73027;Parent=Phyra73027;rank=1 scaffold_2 . exon 290446 290625 . - . ID=Phyra73027.1;Parent=Phyra73027;constitutive=1;rank=1 scaffold_2 . repeat_region 305508 305515 . ? . description=dust scaffold_2 . biological_region 306902 306905 0.999 - . logic_name=eponine scaffold_2 . biological_region 306947 306950 0.999 - . logic_name=eponine scaffold_2 . biological_region 306959 306966 0.999 + . logic_name=eponine scaffold_2 . biological_region 308343 308344 0.999 - . logic_name=eponine scaffold_2 . biological_region 308393 308397 0.999 - . logic_name=eponine scaffold_2 . biological_region 308589 308593 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 309288 311308 . - . ID=Phyra73030;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000095;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 309288 311308 . - . ID=Phyra73030;Parent=Phyra73030;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 309288 311165 . - 0 ID=Phyra73030;Parent=Phyra73030;rank=2 scaffold_2 . exon 309288 311165 . - . ID=Phyra73030.2;Parent=Phyra73030;constitutive=1;rank=2 scaffold_2 . CDS 311294 311308 . - 0 ID=Phyra73030;Parent=Phyra73030;rank=1 scaffold_2 ensembl protein_coding_gene 301466 307389 . - . ID=Phyra93425;biotype=protein_coding;external_name=C_scaffold_2000027;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 301466 307389 . - . ID=Phyra93425;Parent=Phyra93425;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 301466 301501 . - 0 ID=Phyra93425;Parent=Phyra93425;rank=15 scaffold_2 . exon 301466 301501 . - . ID=Phyra93425.15;Parent=Phyra93425;constitutive=1;rank=15 scaffold_2 . CDS 301599 301784 . - 0 ID=Phyra93425;Parent=Phyra93425;rank=14 scaffold_2 . exon 301599 301784 . - . ID=Phyra93425.14;Parent=Phyra93425;constitutive=1;rank=14 scaffold_2 . CDS 302196 302423 . - 0 ID=Phyra93425;Parent=Phyra93425;rank=13 scaffold_2 . exon 302196 302423 . - . ID=Phyra93425.13;Parent=Phyra93425;constitutive=1;rank=13 scaffold_2 . CDS 302451 302614 . - 0 ID=Phyra93425;Parent=Phyra93425;rank=12 scaffold_2 . exon 302451 302614 . - . ID=Phyra93425.12;Parent=Phyra93425;constitutive=1;ensembl_phase=1;rank=12 scaffold_2 . CDS 302765 302964 . - 0 ID=Phyra93425;Parent=Phyra93425;rank=11 scaffold_2 . exon 302765 302964 . - . ID=Phyra93425.11;Parent=Phyra93425;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_2 . CDS 303160 303275 . - 0 ID=Phyra93425;Parent=Phyra93425;rank=10 scaffold_2 . exon 303160 303275 . - . ID=Phyra93425.10;Parent=Phyra93425;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_2 . CDS 303363 303941 . - 0 ID=Phyra93425;Parent=Phyra93425;rank=9 scaffold_2 . exon 303363 303941 . - . ID=Phyra93425.9;Parent=Phyra93425;constitutive=1;rank=9 scaffold_2 . CDS 303966 304108 . - 0 ID=Phyra93425;Parent=Phyra93425;rank=8 scaffold_2 . exon 303966 304108 . - . ID=Phyra93425.8;Parent=Phyra93425;constitutive=1;ensembl_phase=1;rank=8 scaffold_2 . CDS 304253 304503 . - 0 ID=Phyra93425;Parent=Phyra93425;rank=7 scaffold_2 . exon 304253 304503 . - . ID=Phyra93425.7;Parent=Phyra93425;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_2 . CDS 304885 305312 . - 0 ID=Phyra93425;Parent=Phyra93425;rank=6 scaffold_2 . exon 304885 305312 . - . ID=Phyra93425.6;Parent=Phyra93425;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_2 . CDS 305610 305671 . - 0 ID=Phyra93425;Parent=Phyra93425;rank=5 scaffold_2 . exon 305610 305671 . - . ID=Phyra93425.5;Parent=Phyra93425;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 305722 305777 . - 0 ID=Phyra93425;Parent=Phyra93425;rank=4 scaffold_2 . exon 305722 305777 . - . ID=Phyra93425.4;Parent=Phyra93425;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 306245 306401 . - 0 ID=Phyra93425;Parent=Phyra93425;rank=3 scaffold_2 . exon 306245 306401 . - . ID=Phyra93425.3;Parent=Phyra93425;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_2 . CDS 306471 306686 . - 0 ID=Phyra93425;Parent=Phyra93425;rank=2 scaffold_2 . exon 306471 306686 . - . ID=Phyra93425.2;Parent=Phyra93425;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 306744 307389 . - 0 ID=Phyra93425;Parent=Phyra93425;rank=1 scaffold_2 . exon 306744 307389 . - . ID=Phyra93425.1;Parent=Phyra93425;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 307789 309143 . + . ID=Phyra93426;biotype=protein_coding;external_name=C_scaffold_2000028;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 307789 309143 . + . ID=Phyra93426;Parent=Phyra93426;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 307789 307842 . + 0 ID=Phyra93426;Parent=Phyra93426;rank=1 scaffold_2 . exon 307789 307842 . + . ID=Phyra93426.1;Parent=Phyra93426;constitutive=1;rank=1 scaffold_2 . CDS 307908 309143 . + 0 ID=Phyra93426;Parent=Phyra93426;rank=2 scaffold_2 . exon 307908 309143 . + . ID=Phyra93426.2;Parent=Phyra93426;constitutive=1;rank=2 scaffold_2 . repeat_region 315132 315184 . ? . description=trf scaffold_2 . repeat_region 316779 316806 . ? . description=trf scaffold_2 . repeat_region 316781 316834 . ? . description=trf scaffold_2 . repeat_region 318836 318856 . ? . description=trf scaffold_2 . exon 311294 311308 . - . ID=Phyra73030.1;Parent=Phyra73030;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 311483 313966 . - . ID=Phyra73031;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000096;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 311483 313966 . - . ID=Phyra73031;Parent=Phyra73031;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 311483 313224 . - 0 ID=Phyra73031;Parent=Phyra73031;rank=3 scaffold_2 . exon 311483 313224 . - . ID=Phyra73031.3;Parent=Phyra73031;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 313300 313680 . - 0 ID=Phyra73031;Parent=Phyra73031;rank=2 scaffold_2 . exon 313300 313680 . - . ID=Phyra73031.2;Parent=Phyra73031;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 313936 313966 . - 0 ID=Phyra73031;Parent=Phyra73031;rank=1 scaffold_2 . exon 313936 313966 . - . ID=Phyra73031.1;Parent=Phyra73031;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 314762 316030 . + . ID=Phyra73032;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000097;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 314762 316030 . + . ID=Phyra73032;Parent=Phyra73032;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 314762 314832 . + 0 ID=Phyra73032;Parent=Phyra73032;rank=1 scaffold_2 . exon 314762 314832 . + . ID=Phyra73032.1;Parent=Phyra73032;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 314924 315643 . + 0 ID=Phyra73032;Parent=Phyra73032;rank=2 scaffold_2 . exon 314924 315643 . + . ID=Phyra73032.2;Parent=Phyra73032;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 315709 315766 . + 0 ID=Phyra73032;Parent=Phyra73032;rank=3 scaffold_2 . exon 315709 315766 . + . ID=Phyra73032.3;Parent=Phyra73032;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 315839 316030 . + 0 ID=Phyra73032;Parent=Phyra73032;rank=4 scaffold_2 . exon 315839 316030 . + . ID=Phyra73032.4;Parent=Phyra73032;constitutive=1;rank=4 scaffold_2 ensembl protein_coding_gene 316775 317410 . - . ID=Phyra73033;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000098;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 316775 317410 . - . ID=Phyra73033;Parent=Phyra73033;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 316775 317410 . - 0 ID=Phyra73033;Parent=Phyra73033;rank=1 scaffold_2 . exon 316775 317410 . - . ID=Phyra73033.1;Parent=Phyra73033;constitutive=1;rank=1 scaffold_2 . biological_region 320071 320072 0.999 + . logic_name=eponine scaffold_2 . biological_region 321769 321771 0.999 + . logic_name=eponine scaffold_2 . biological_region 321800 321802 0.999 + . logic_name=eponine scaffold_2 . repeat_region 325704 325720 . ? . description=dust scaffold_2 . biological_region 326749 326751 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 324971 325475 . + . ID=Phyra73035;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000100;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 324971 325475 . + . ID=Phyra73035;Parent=Phyra73035;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 324971 325333 . + 0 ID=Phyra73035;Parent=Phyra73035;rank=1 scaffold_2 . exon 324971 325333 . + . ID=Phyra73035.1;Parent=Phyra73035;constitutive=1;rank=1 scaffold_2 . CDS 325389 325475 . + 0 ID=Phyra73035;Parent=Phyra73035;rank=2 scaffold_2 . exon 325389 325475 . + . ID=Phyra73035.2;Parent=Phyra73035;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 326219 326975 . - . ID=Phyra73036;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000101;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 326219 326975 . - . ID=Phyra73036;Parent=Phyra73036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 326219 326611 . - 0 ID=Phyra73036;Parent=Phyra73036;rank=3 scaffold_2 . exon 326219 326611 . - . ID=Phyra73036.3;Parent=Phyra73036;constitutive=1;rank=3 scaffold_2 . CDS 326672 326889 . - 0 ID=Phyra73036;Parent=Phyra73036;rank=2 scaffold_2 . exon 326672 326889 . - . ID=Phyra73036.2;Parent=Phyra73036;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 326948 326975 . - 0 ID=Phyra73036;Parent=Phyra73036;rank=1 scaffold_2 . exon 326948 326975 . - . ID=Phyra73036.1;Parent=Phyra73036;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 327383 329044 . + . ID=Phyra73037;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000102;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 327383 329044 . + . ID=Phyra73037;Parent=Phyra73037;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 327383 329044 . + 0 ID=Phyra73037;Parent=Phyra73037;rank=1 scaffold_2 . exon 327383 329044 . + . ID=Phyra73037.1;Parent=Phyra73037;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 319936 322892 . - . ID=Phyra93428;biotype=protein_coding;external_name=C_scaffold_2000030;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 319936 322892 . - . ID=Phyra93428;Parent=Phyra93428;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 319936 320639 . - 0 ID=Phyra93428;Parent=Phyra93428;rank=8 scaffold_2 . exon 319936 320639 . - . ID=Phyra93428.8;Parent=Phyra93428;constitutive=1;ensembl_phase=1;rank=8 scaffold_2 . CDS 320730 321096 . - 0 ID=Phyra93428;Parent=Phyra93428;rank=7 scaffold_2 . exon 320730 321096 . - . ID=Phyra93428.7;Parent=Phyra93428;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_2 . CDS 321237 321452 . - 0 ID=Phyra93428;Parent=Phyra93428;rank=6 scaffold_2 . exon 321237 321452 . - . ID=Phyra93428.6;Parent=Phyra93428;constitutive=1;rank=6 scaffold_2 . CDS 321567 321680 . - 0 ID=Phyra93428;Parent=Phyra93428;rank=5 scaffold_2 . exon 321567 321680 . - . ID=Phyra93428.5;Parent=Phyra93428;constitutive=1;rank=5 scaffold_2 . CDS 321754 321913 . - 0 ID=Phyra93428;Parent=Phyra93428;rank=4 scaffold_2 . exon 321754 321913 . - . ID=Phyra93428.4;Parent=Phyra93428;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 322009 322198 . - 0 ID=Phyra93428;Parent=Phyra93428;rank=3 scaffold_2 . exon 322009 322198 . - . ID=Phyra93428.3;Parent=Phyra93428;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_2 . CDS 322289 322453 . - 0 ID=Phyra93428;Parent=Phyra93428;rank=2 scaffold_2 . exon 322289 322453 . - . ID=Phyra93428.2;Parent=Phyra93428;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 322820 322892 . - 0 ID=Phyra93428;Parent=Phyra93428;rank=1 scaffold_2 . exon 322820 322892 . - . ID=Phyra93428.1;Parent=Phyra93428;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . repeat_region 330900 330936 . ? . description=trf scaffold_2 ensembl protein_coding_gene 335416 336087 . + . ID=Phyra73040;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000105;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 335416 336087 . + . ID=Phyra73040;Parent=Phyra73040;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 335416 336087 . + 0 ID=Phyra73040;Parent=Phyra73040;rank=1 scaffold_2 . exon 335416 336087 . + . ID=Phyra73040.1;Parent=Phyra73040;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 331386 333000 . + . ID=Phyra93431;biotype=protein_coding;external_name=C_scaffold_2000033;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 331386 333000 . + . ID=Phyra93431;Parent=Phyra93431;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 331386 331529 . + 0 ID=Phyra93431;Parent=Phyra93431;rank=1 scaffold_2 . exon 331386 331529 . + . ID=Phyra93431.1;Parent=Phyra93431;constitutive=1;rank=1 scaffold_2 . CDS 331601 331671 . + 0 ID=Phyra93431;Parent=Phyra93431;rank=2 scaffold_2 . exon 331601 331671 . + . ID=Phyra93431.2;Parent=Phyra93431;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 331746 331868 . + 0 ID=Phyra93431;Parent=Phyra93431;rank=3 scaffold_2 . exon 331746 331868 . + . ID=Phyra93431.3;Parent=Phyra93431;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_2 . CDS 331908 332107 . + 0 ID=Phyra93431;Parent=Phyra93431;rank=4 scaffold_2 . exon 331908 332107 . + . ID=Phyra93431.4;Parent=Phyra93431;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 332183 332258 . + 0 ID=Phyra93431;Parent=Phyra93431;rank=5 scaffold_2 . exon 332183 332258 . + . ID=Phyra93431.5;Parent=Phyra93431;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_2 . CDS 332335 332409 . + 0 ID=Phyra93431;Parent=Phyra93431;rank=6 scaffold_2 . exon 332335 332409 . + . ID=Phyra93431.6;Parent=Phyra93431;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_2 . CDS 332487 332753 . + 0 ID=Phyra93431;Parent=Phyra93431;rank=7 scaffold_2 . exon 332487 332753 . + . ID=Phyra93431.7;Parent=Phyra93431;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_2 . CDS 332799 333000 . + 0 ID=Phyra93431;Parent=Phyra93431;rank=8 scaffold_2 . exon 332799 333000 . + . ID=Phyra93431.8;Parent=Phyra93431;constitutive=1;ensembl_phase=2;rank=8 scaffold_2 ensembl protein_coding_gene 333064 334870 . - . ID=Phyra93432;biotype=protein_coding;external_name=C_scaffold_2000034;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 333064 334870 . - . ID=Phyra93432;Parent=Phyra93432;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 333064 333130 . - 0 ID=Phyra93432;Parent=Phyra93432;rank=4 scaffold_2 . exon 333064 333130 . - . ID=Phyra93432.4;Parent=Phyra93432;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 333206 333923 . - 0 ID=Phyra93432;Parent=Phyra93432;rank=3 scaffold_2 . exon 333206 333923 . - . ID=Phyra93432.3;Parent=Phyra93432;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_2 . CDS 334008 334097 . - 0 ID=Phyra93432;Parent=Phyra93432;rank=2 scaffold_2 . exon 334008 334097 . - . ID=Phyra93432.2;Parent=Phyra93432;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 334171 334870 . - 0 ID=Phyra93432;Parent=Phyra93432;rank=1 scaffold_2 . exon 334171 334870 . - . ID=Phyra93432.1;Parent=Phyra93432;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 336872 339088 . + . ID=Phyra93434;biotype=protein_coding;external_name=C_scaffold_2000036;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 336872 339088 . + . ID=Phyra93434;Parent=Phyra93434;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 336872 336960 . + 0 ID=Phyra93434;Parent=Phyra93434;rank=1 scaffold_2 . exon 336872 336960 . + . ID=Phyra93434.1;Parent=Phyra93434;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 337063 337540 . + 0 ID=Phyra93434;Parent=Phyra93434;rank=2 scaffold_2 . exon 337063 337540 . + . ID=Phyra93434.2;Parent=Phyra93434;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 337577 338102 . + 0 ID=Phyra93434;Parent=Phyra93434;rank=3 scaffold_2 . exon 337577 338102 . + . ID=Phyra93434.3;Parent=Phyra93434;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 338127 339088 . + 0 ID=Phyra93434;Parent=Phyra93434;rank=4 scaffold_2 . exon 338127 339088 . + . ID=Phyra93434.4;Parent=Phyra93434;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 ensembl protein_coding_gene 339751 341088 . + . ID=Phyra93435;biotype=protein_coding;external_name=C_scaffold_2000037;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 339751 341088 . + . ID=Phyra93435;Parent=Phyra93435;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 339751 340310 . + 0 ID=Phyra93435;Parent=Phyra93435;rank=1 scaffold_2 . exon 339751 340310 . + . ID=Phyra93435.1;Parent=Phyra93435;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 340389 340483 . + 0 ID=Phyra93435;Parent=Phyra93435;rank=2 scaffold_2 . CDS 340547 341088 . + 0 ID=Phyra93435;Parent=Phyra93435;rank=3 scaffold_2 . repeat_region 341710 341718 . ? . description=dust scaffold_2 . repeat_region 342605 342613 . ? . description=dust scaffold_2 . biological_region 348554 348558 0.999 - . logic_name=eponine scaffold_2 . biological_region 348609 348613 0.999 + . logic_name=eponine scaffold_2 . exon 340389 340483 . + . ID=Phyra93435.2;Parent=Phyra93435;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . exon 340547 341088 . + . ID=Phyra93435.3;Parent=Phyra93435;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 ensembl protein_coding_gene 342808 345760 . + . ID=Phyra93437;biotype=protein_coding;external_name=C_scaffold_2000039;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 342808 345760 . + . ID=Phyra93437;Parent=Phyra93437;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 342808 344116 . + 0 ID=Phyra93437;Parent=Phyra93437;rank=1 scaffold_2 . exon 342808 344116 . + . ID=Phyra93437.1;Parent=Phyra93437;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 344391 345537 . + 0 ID=Phyra93437;Parent=Phyra93437;rank=2 scaffold_2 . exon 344391 345537 . + . ID=Phyra93437.2;Parent=Phyra93437;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 345580 345760 . + 0 ID=Phyra93437;Parent=Phyra93437;rank=3 scaffold_2 . exon 345580 345760 . + . ID=Phyra93437.3;Parent=Phyra93437;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 ensembl protein_coding_gene 348471 349963 . + . ID=Phyra93438;biotype=protein_coding;external_name=C_scaffold_2000040;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 348471 349963 . + . ID=Phyra93438;Parent=Phyra93438;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 348471 348881 . + 0 ID=Phyra93438;Parent=Phyra93438;rank=1 scaffold_2 . exon 348471 348881 . + . ID=Phyra93438.1;Parent=Phyra93438;constitutive=1;rank=1 scaffold_2 . CDS 348954 349670 . + 0 ID=Phyra93438;Parent=Phyra93438;rank=2 scaffold_2 . exon 348954 349670 . + . ID=Phyra93438.2;Parent=Phyra93438;constitutive=1;rank=2 scaffold_2 . CDS 349722 349845 . + 0 ID=Phyra93438;Parent=Phyra93438;rank=3 scaffold_2 . exon 349722 349845 . + . ID=Phyra93438.3;Parent=Phyra93438;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 349911 349963 . + 0 ID=Phyra93438;Parent=Phyra93438;rank=4 scaffold_2 ensembl protein_coding_gene 350097 350984 . - . ID=Phyra73046;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000111;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 350097 350984 . - . ID=Phyra73046;Parent=Phyra73046;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 350097 350984 . - 0 ID=Phyra73046;Parent=Phyra73046;rank=1 scaffold_2 . exon 350097 350984 . - . ID=Phyra73046.1;Parent=Phyra73046;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 355355 355947 . - . ID=Phyra73048;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000113;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 355355 355947 . - . ID=Phyra73048;Parent=Phyra73048;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 355355 355398 . - 0 ID=Phyra73048;Parent=Phyra73048;rank=2 scaffold_2 . exon 355355 355398 . - . ID=Phyra73048.2;Parent=Phyra73048;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 355662 355947 . - 0 ID=Phyra73048;Parent=Phyra73048;rank=1 scaffold_2 . exon 355662 355947 . - . ID=Phyra73048.1;Parent=Phyra73048;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . exon 349911 349963 . + . ID=Phyra93438.4;Parent=Phyra93438;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 ensembl protein_coding_gene 351125 352490 . - . ID=Phyra93440;biotype=protein_coding;external_name=C_scaffold_2000042;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 351125 352490 . - . ID=Phyra93440;Parent=Phyra93440;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 351125 351838 . - 0 ID=Phyra93440;Parent=Phyra93440;rank=3 scaffold_2 . exon 351125 351838 . - . ID=Phyra93440.3;Parent=Phyra93440;constitutive=1;rank=3 scaffold_2 . CDS 352080 352267 . - 0 ID=Phyra93440;Parent=Phyra93440;rank=2 scaffold_2 . exon 352080 352267 . - . ID=Phyra93440.2;Parent=Phyra93440;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 352427 352490 . - 0 ID=Phyra93440;Parent=Phyra93440;rank=1 scaffold_2 . exon 352427 352490 . - . ID=Phyra93440.1;Parent=Phyra93440;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 356351 360775 . + . ID=Phyra93441;biotype=protein_coding;external_name=C_scaffold_2000043;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 356351 360775 . + . ID=Phyra93441;Parent=Phyra93441;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 356351 356520 . + 0 ID=Phyra93441;Parent=Phyra93441;rank=1 scaffold_2 . exon 356351 356520 . + . ID=Phyra93441.1;Parent=Phyra93441;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 356646 356820 . + 0 ID=Phyra93441;Parent=Phyra93441;rank=2 scaffold_2 . exon 356646 356820 . + . ID=Phyra93441.2;Parent=Phyra93441;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 356923 357549 . + 0 ID=Phyra93441;Parent=Phyra93441;rank=3 scaffold_2 . exon 356923 357549 . + . ID=Phyra93441.3;Parent=Phyra93441;constitutive=1;rank=3 scaffold_2 . CDS 357833 358172 . + 0 ID=Phyra93441;Parent=Phyra93441;rank=4 scaffold_2 . exon 357833 358172 . + . ID=Phyra93441.4;Parent=Phyra93441;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_2 . CDS 358203 358637 . + 0 ID=Phyra93441;Parent=Phyra93441;rank=5 scaffold_2 . exon 358203 358637 . + . ID=Phyra93441.5;Parent=Phyra93441;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 358695 359108 . + 0 ID=Phyra93441;Parent=Phyra93441;rank=6 scaffold_2 . exon 358695 359108 . + . ID=Phyra93441.6;Parent=Phyra93441;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_2 . CDS 359280 360134 . + 0 ID=Phyra93441;Parent=Phyra93441;rank=7 scaffold_2 . exon 359280 360134 . + . ID=Phyra93441.7;Parent=Phyra93441;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_2 . CDS 360186 360418 . + 0 ID=Phyra93441;Parent=Phyra93441;rank=8 scaffold_2 . CDS 360452 360775 . + 0 ID=Phyra93441;Parent=Phyra93441;rank=9 scaffold_2 . repeat_region 360644 360727 . ? . description=trf scaffold_2 . repeat_region 364584 364591 . ? . description=dust scaffold_2 . repeat_region 367520 367543 . ? . description=trf scaffold_2 . repeat_region 367520 367543 . ? . description=dust scaffold_2 . biological_region 367525 367526 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 363597 366864 . - . ID=Phyra71066;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000007;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 363597 366864 . - . ID=Phyra71066;Parent=Phyra71066;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 363597 364580 . - 0 ID=Phyra71066;Parent=Phyra71066;rank=3 scaffold_2 . exon 363597 364580 . - . ID=Phyra71066.3;Parent=Phyra71066;constitutive=1;rank=3 scaffold_2 . CDS 364653 366413 . - 0 ID=Phyra71066;Parent=Phyra71066;rank=2 scaffold_2 . exon 364653 366413 . - . ID=Phyra71066.2;Parent=Phyra71066;constitutive=1;rank=2 scaffold_2 . CDS 366508 366864 . - 0 ID=Phyra71066;Parent=Phyra71066;rank=1 scaffold_2 . exon 366508 366864 . - . ID=Phyra71066.1;Parent=Phyra71066;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 360944 363436 . - . ID=Phyra73050;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000115;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 360944 363436 . - . ID=Phyra73050;Parent=Phyra73050;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 360944 361050 . - 0 ID=Phyra73050;Parent=Phyra73050;rank=10 scaffold_2 . exon 360944 361050 . - . ID=Phyra73050.10;Parent=Phyra73050;constitutive=1;ensembl_phase=1;rank=10 scaffold_2 . CDS 361117 361195 . - 0 ID=Phyra73050;Parent=Phyra73050;rank=9 scaffold_2 . exon 361117 361195 . - . ID=Phyra73050.9;Parent=Phyra73050;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_2 . CDS 361268 361521 . - 0 ID=Phyra73050;Parent=Phyra73050;rank=8 scaffold_2 . exon 361268 361521 . - . ID=Phyra73050.8;Parent=Phyra73050;constitutive=1;ensembl_phase=1;rank=8 scaffold_2 . CDS 361604 361697 . - 0 ID=Phyra73050;Parent=Phyra73050;rank=7 scaffold_2 . exon 361604 361697 . - . ID=Phyra73050.7;Parent=Phyra73050;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_2 . CDS 361775 362011 . - 0 ID=Phyra73050;Parent=Phyra73050;rank=6 scaffold_2 . exon 361775 362011 . - . ID=Phyra73050.6;Parent=Phyra73050;constitutive=1;rank=6 scaffold_2 . CDS 362091 362245 . - 0 ID=Phyra73050;Parent=Phyra73050;rank=5 scaffold_2 . exon 362091 362245 . - . ID=Phyra73050.5;Parent=Phyra73050;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 362456 362803 . - 0 ID=Phyra73050;Parent=Phyra73050;rank=4 scaffold_2 . exon 362456 362803 . - . ID=Phyra73050.4;Parent=Phyra73050;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 362875 362938 . - 0 ID=Phyra73050;Parent=Phyra73050;rank=3 scaffold_2 . exon 362875 362938 . - . ID=Phyra73050.3;Parent=Phyra73050;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 363007 363294 . - 0 ID=Phyra73050;Parent=Phyra73050;rank=2 scaffold_2 . exon 363007 363294 . - . ID=Phyra73050.2;Parent=Phyra73050;constitutive=1;rank=2 scaffold_2 . CDS 363371 363436 . - 0 ID=Phyra73050;Parent=Phyra73050;rank=1 scaffold_2 . exon 363371 363436 . - . ID=Phyra73050.1;Parent=Phyra73050;constitutive=1;rank=1 scaffold_2 . exon 360186 360418 . + . ID=Phyra93441.8;Parent=Phyra93441;constitutive=1;ensembl_phase=1;rank=8 scaffold_2 . exon 360452 360775 . + . ID=Phyra93441.9;Parent=Phyra93441;constitutive=1;rank=9 scaffold_2 ensembl protein_coding_gene 367513 369132 . + . ID=Phyra93443;biotype=protein_coding;external_name=C_scaffold_2000045;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 367513 369132 . + . ID=Phyra93443;Parent=Phyra93443;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 367513 367676 . + 0 ID=Phyra93443;Parent=Phyra93443;rank=1 scaffold_2 . exon 367513 367676 . + . ID=Phyra93443.1;Parent=Phyra93443;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 367750 367830 . + 0 ID=Phyra93443;Parent=Phyra93443;rank=2 scaffold_2 . exon 367750 367830 . + . ID=Phyra93443.2;Parent=Phyra93443;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 367904 368087 . + 0 ID=Phyra93443;Parent=Phyra93443;rank=3 scaffold_2 . exon 367904 368087 . + . ID=Phyra93443.3;Parent=Phyra93443;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 368150 368346 . + 0 ID=Phyra93443;Parent=Phyra93443;rank=4 scaffold_2 . exon 368150 368346 . + . ID=Phyra93443.4;Parent=Phyra93443;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . CDS 368428 368665 . + 0 ID=Phyra93443;Parent=Phyra93443;rank=5 scaffold_2 . exon 368428 368665 . + . ID=Phyra93443.5;Parent=Phyra93443;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 368737 368931 . + 0 ID=Phyra93443;Parent=Phyra93443;rank=6 scaffold_2 . exon 368737 368931 . + . ID=Phyra93443.6;Parent=Phyra93443;constitutive=1;rank=6 scaffold_2 . CDS 369016 369132 . + 0 ID=Phyra93443;Parent=Phyra93443;rank=7 scaffold_2 . exon 369016 369132 . + . ID=Phyra93443.7;Parent=Phyra93443;constitutive=1;rank=7 scaffold_2 ensembl protein_coding_gene 369793 370401 . - . ID=Phyra43795;biotype=protein_coding;external_name=gwEuk.2.46.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 369793 370401 . - . ID=Phyra43795;Parent=Phyra43795;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 369793 370401 . - 0 ID=Phyra43795;Parent=Phyra43795;rank=1 scaffold_2 . exon 369793 370401 . - . ID=Phyra43795.1;Parent=Phyra43795;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 370730 371403 . + . ID=Phyra73054;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000119;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 370730 371403 . + . ID=Phyra73054;Parent=Phyra73054;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 370730 370863 . + 0 ID=Phyra73054;Parent=Phyra73054;rank=1 scaffold_2 . exon 370730 370863 . + . ID=Phyra73054.1;Parent=Phyra73054;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 370920 371047 . + 0 ID=Phyra73054;Parent=Phyra73054;rank=2 scaffold_2 . exon 370920 371047 . + . ID=Phyra73054.2;Parent=Phyra73054;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 371084 371403 . + 0 ID=Phyra73054;Parent=Phyra73054;rank=3 scaffold_2 . exon 371084 371403 . + . ID=Phyra73054.3;Parent=Phyra73054;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 ensembl protein_coding_gene 374487 377792 . + . ID=Phyra73056;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000121;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 374487 377792 . + . ID=Phyra73056;Parent=Phyra73056;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 374487 377792 . + 0 ID=Phyra73056;Parent=Phyra73056;rank=1 scaffold_2 . exon 374487 377792 . + . ID=Phyra73056.1;Parent=Phyra73056;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 372208 374158 . - . ID=Phyra93449;biotype=protein_coding;external_name=C_scaffold_2000051;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 372208 374158 . - . ID=Phyra93449;Parent=Phyra93449;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 372208 372369 . - 0 ID=Phyra93449;Parent=Phyra93449;rank=7 scaffold_2 . exon 372208 372369 . - . ID=Phyra93449.7;Parent=Phyra93449;constitutive=1;rank=7 scaffold_2 . CDS 372450 372754 . - 0 ID=Phyra93449;Parent=Phyra93449;rank=6 scaffold_2 . exon 372450 372754 . - . ID=Phyra93449.6;Parent=Phyra93449;constitutive=1;ensembl_phase=1;rank=6 scaffold_2 . CDS 372828 372836 . - 0 ID=Phyra93449;Parent=Phyra93449;rank=5 scaffold_2 . exon 372828 372836 . - . ID=Phyra93449.5;Parent=Phyra93449;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 372882 373410 . - 0 ID=Phyra93449;Parent=Phyra93449;rank=4 scaffold_2 . exon 372882 373410 . - . ID=Phyra93449.4;Parent=Phyra93449;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_2 . CDS 373482 373731 . - 0 ID=Phyra93449;Parent=Phyra93449;rank=3 scaffold_2 . exon 373482 373731 . - . ID=Phyra93449.3;Parent=Phyra93449;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 373823 373967 . - 0 ID=Phyra93449;Parent=Phyra93449;rank=2 scaffold_2 . exon 373823 373967 . - . ID=Phyra93449.2;Parent=Phyra93449;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 374047 374158 . - 0 ID=Phyra93449;Parent=Phyra93449;rank=1 scaffold_2 . exon 374047 374158 . - . ID=Phyra93449.1;Parent=Phyra93449;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . repeat_region 381208 381216 . ? . description=dust scaffold_2 . biological_region 388563 388565 0.999 - . logic_name=eponine scaffold_2 . biological_region 389066 389066 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 384652 385116 . - . ID=Phyra43797;biotype=protein_coding;external_name=gwEuk.2.48.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 384652 385116 . - . ID=Phyra43797;Parent=Phyra43797;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 384652 385116 . - 0 ID=Phyra43797;Parent=Phyra43797;rank=1 scaffold_2 . exon 384652 385116 . - . ID=Phyra43797.1;Parent=Phyra43797;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 386384 386626 . - . ID=Phyra43798;biotype=protein_coding;external_name=gwEuk.2.49.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 386384 386626 . - . ID=Phyra43798;Parent=Phyra43798;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 386384 386626 . - 0 ID=Phyra43798;Parent=Phyra43798;rank=1 scaffold_2 . exon 386384 386626 . - . ID=Phyra43798.1;Parent=Phyra43798;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 388658 389324 . - . ID=Phyra71068;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000009;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 388658 389324 . - . ID=Phyra71068;Parent=Phyra71068;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 388658 388756 . - 0 ID=Phyra71068;Parent=Phyra71068;rank=4 scaffold_2 . exon 388658 388756 . - . ID=Phyra71068.4;Parent=Phyra71068;constitutive=1;rank=4 scaffold_2 . CDS 388826 388892 . - 0 ID=Phyra71068;Parent=Phyra71068;rank=3 scaffold_2 . exon 388826 388892 . - . ID=Phyra71068.3;Parent=Phyra71068;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 388970 389121 . - 0 ID=Phyra71068;Parent=Phyra71068;rank=2 scaffold_2 . exon 388970 389121 . - . ID=Phyra71068.2;Parent=Phyra71068;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 389190 389324 . - 0 ID=Phyra71068;Parent=Phyra71068;rank=1 scaffold_2 . exon 389190 389324 . - . ID=Phyra71068.1;Parent=Phyra71068;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 380144 381190 . + . ID=Phyra73057;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000122;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 380144 381190 . + . ID=Phyra73057;Parent=Phyra73057;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 380144 381190 . + 0 ID=Phyra73057;Parent=Phyra73057;rank=1 scaffold_2 . exon 380144 381190 . + . ID=Phyra73057.1;Parent=Phyra73057;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 389479 391475 . + . ID=Phyra73061;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000126;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 389479 391475 . + . ID=Phyra73061;Parent=Phyra73061;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 389479 389612 . + 0 ID=Phyra73061;Parent=Phyra73061;rank=1 scaffold_2 . exon 389479 389612 . + . ID=Phyra73061.1;Parent=Phyra73061;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 389683 389743 . + 0 ID=Phyra73061;Parent=Phyra73061;rank=2 scaffold_2 . exon 389683 389743 . + . ID=Phyra73061.2;Parent=Phyra73061;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 389802 391475 . + 0 ID=Phyra73061;Parent=Phyra73061;rank=3 scaffold_2 ensembl protein_coding_gene 381305 383011 . + . ID=Phyra93452;biotype=protein_coding;external_name=C_scaffold_2000054;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 381305 383011 . + . ID=Phyra93452;Parent=Phyra93452;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 381305 381349 . + 0 ID=Phyra93452;Parent=Phyra93452;rank=1 scaffold_2 . exon 381305 381349 . + . ID=Phyra93452.1;Parent=Phyra93452;constitutive=1;rank=1 scaffold_2 . CDS 381415 381767 . + 0 ID=Phyra93452;Parent=Phyra93452;rank=2 scaffold_2 . exon 381415 381767 . + . ID=Phyra93452.2;Parent=Phyra93452;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 381844 381880 . + 0 ID=Phyra93452;Parent=Phyra93452;rank=3 scaffold_2 . exon 381844 381880 . + . ID=Phyra93452.3;Parent=Phyra93452;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 381943 381981 . + 0 ID=Phyra93452;Parent=Phyra93452;rank=4 scaffold_2 . exon 381943 381981 . + . ID=Phyra93452.4;Parent=Phyra93452;constitutive=1;rank=4 scaffold_2 . CDS 382062 382148 . + 0 ID=Phyra93452;Parent=Phyra93452;rank=5 scaffold_2 . exon 382062 382148 . + . ID=Phyra93452.5;Parent=Phyra93452;constitutive=1;rank=5 scaffold_2 . CDS 382222 382500 . + 0 ID=Phyra93452;Parent=Phyra93452;rank=6 scaffold_2 . exon 382222 382500 . + . ID=Phyra93452.6;Parent=Phyra93452;constitutive=1;rank=6 scaffold_2 . CDS 382583 383011 . + 0 ID=Phyra93452;Parent=Phyra93452;rank=7 scaffold_2 . exon 382583 383011 . + . ID=Phyra93452.7;Parent=Phyra93452;constitutive=1;rank=7 scaffold_2 ensembl protein_coding_gene 386809 388378 . + . ID=Phyra93453;biotype=protein_coding;external_name=C_scaffold_2000055;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 386809 388378 . + . ID=Phyra93453;Parent=Phyra93453;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 386809 387634 . + 0 ID=Phyra93453;Parent=Phyra93453;rank=1 scaffold_2 . exon 386809 387634 . + . ID=Phyra93453.1;Parent=Phyra93453;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 387740 387972 . + 0 ID=Phyra93453;Parent=Phyra93453;rank=2 scaffold_2 . exon 387740 387972 . + . ID=Phyra93453.2;Parent=Phyra93453;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 388050 388331 . + 0 ID=Phyra93453;Parent=Phyra93453;rank=3 scaffold_2 . exon 388050 388331 . + . ID=Phyra93453.3;Parent=Phyra93453;constitutive=1;rank=3 scaffold_2 . CDS 388370 388378 . + 0 ID=Phyra93453;Parent=Phyra93453;rank=4 scaffold_2 . exon 388370 388378 . + . ID=Phyra93453.4;Parent=Phyra93453;constitutive=1;rank=4 scaffold_2 ensembl protein_coding_gene 396688 396999 . - . ID=Phyra71069;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000010;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 396688 396999 . - . ID=Phyra71069;Parent=Phyra71069;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 396688 396999 . - 0 ID=Phyra71069;Parent=Phyra71069;rank=1 scaffold_2 . exon 396688 396999 . - . ID=Phyra71069.1;Parent=Phyra71069;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 397425 397835 . + . ID=Phyra71070;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000011;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 397425 397835 . + . ID=Phyra71070;Parent=Phyra71070;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 397425 397835 . + 0 ID=Phyra71070;Parent=Phyra71070;rank=1 scaffold_2 . exon 397425 397835 . + . ID=Phyra71070.1;Parent=Phyra71070;constitutive=1;rank=1 scaffold_2 . exon 389802 391475 . + . ID=Phyra73061.3;Parent=Phyra73061;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 399596 399988 . + . ID=Phyra73066;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000131;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 399596 399988 . + . ID=Phyra73066;Parent=Phyra73066;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 399596 399868 . + 0 ID=Phyra73066;Parent=Phyra73066;rank=1 scaffold_2 . exon 399596 399868 . + . ID=Phyra73066.1;Parent=Phyra73066;constitutive=1;rank=1 scaffold_2 . CDS 399929 399988 . + 0 ID=Phyra73066;Parent=Phyra73066;rank=2 scaffold_2 ensembl protein_coding_gene 394741 396448 . + . ID=Phyra93456;biotype=protein_coding;external_name=C_scaffold_2000058;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 394741 396448 . + . ID=Phyra93456;Parent=Phyra93456;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 394741 395133 . + 0 ID=Phyra93456;Parent=Phyra93456;rank=1 scaffold_2 . exon 394741 395133 . + . ID=Phyra93456.1;Parent=Phyra93456;constitutive=1;rank=1 scaffold_2 . CDS 395275 395439 . + 0 ID=Phyra93456;Parent=Phyra93456;rank=2 scaffold_2 . exon 395275 395439 . + . ID=Phyra93456.2;Parent=Phyra93456;constitutive=1;rank=2 scaffold_2 . CDS 395464 395729 . + 0 ID=Phyra93456;Parent=Phyra93456;rank=3 scaffold_2 . exon 395464 395729 . + . ID=Phyra93456.3;Parent=Phyra93456;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 395782 396448 . + 0 ID=Phyra93456;Parent=Phyra93456;rank=4 scaffold_2 . exon 395782 396448 . + . ID=Phyra93456.4;Parent=Phyra93456;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 ensembl protein_coding_gene 398203 399467 . - . ID=Phyra93459;biotype=protein_coding;external_name=C_scaffold_2000061;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 398203 399467 . - . ID=Phyra93459;Parent=Phyra93459;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 398203 398254 . - 0 ID=Phyra93459;Parent=Phyra93459;rank=5 scaffold_2 . exon 398203 398254 . - . ID=Phyra93459.5;Parent=Phyra93459;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 398331 398542 . - 0 ID=Phyra93459;Parent=Phyra93459;rank=4 scaffold_2 . exon 398331 398542 . - . ID=Phyra93459.4;Parent=Phyra93459;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . CDS 398621 398701 . - 0 ID=Phyra93459;Parent=Phyra93459;rank=3 scaffold_2 . exon 398621 398701 . - . ID=Phyra93459.3;Parent=Phyra93459;constitutive=1;rank=3 scaffold_2 . CDS 398774 399094 . - 0 ID=Phyra93459;Parent=Phyra93459;rank=2 scaffold_2 . exon 398774 399094 . - . ID=Phyra93459.2;Parent=Phyra93459;constitutive=1;rank=2 scaffold_2 . CDS 399168 399467 . - 0 ID=Phyra93459;Parent=Phyra93459;rank=1 scaffold_2 . exon 399168 399467 . - . ID=Phyra93459.1;Parent=Phyra93459;constitutive=1;rank=1 scaffold_2 . repeat_region 403488 403501 . ? . description=dust scaffold_2 . biological_region 405463 405465 0.999 - . logic_name=eponine scaffold_2 . biological_region 406684 406685 0.999 - . logic_name=eponine scaffold_2 . repeat_region 407960 407991 . ? . description=trf scaffold_2 . biological_region 408368 408371 0.999 + . logic_name=eponine scaffold_2 . biological_region 408571 408574 0.999 + . logic_name=eponine scaffold_2 . exon 399929 399988 . + . ID=Phyra73066.2;Parent=Phyra73066;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 400707 402452 . + . ID=Phyra73067;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000132;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 400707 402452 . + . ID=Phyra73067;Parent=Phyra73067;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 400707 400904 . + 0 ID=Phyra73067;Parent=Phyra73067;rank=1 scaffold_2 . exon 400707 400904 . + . ID=Phyra73067.1;Parent=Phyra73067;constitutive=1;rank=1 scaffold_2 . CDS 400977 401936 . + 0 ID=Phyra73067;Parent=Phyra73067;rank=2 scaffold_2 . exon 400977 401936 . + . ID=Phyra73067.2;Parent=Phyra73067;constitutive=1;rank=2 scaffold_2 . CDS 402019 402165 . + 0 ID=Phyra73067;Parent=Phyra73067;rank=3 scaffold_2 . exon 402019 402165 . + . ID=Phyra73067.3;Parent=Phyra73067;constitutive=1;rank=3 scaffold_2 . CDS 402246 402452 . + 0 ID=Phyra73067;Parent=Phyra73067;rank=4 scaffold_2 . exon 402246 402452 . + . ID=Phyra73067.4;Parent=Phyra73067;constitutive=1;rank=4 scaffold_2 ensembl protein_coding_gene 404811 405580 . + . ID=Phyra73068;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000133;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 404811 405580 . + . ID=Phyra73068;Parent=Phyra73068;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 404811 405236 . + 0 ID=Phyra73068;Parent=Phyra73068;rank=1 scaffold_2 . exon 404811 405236 . + . ID=Phyra73068.1;Parent=Phyra73068;constitutive=1;rank=1 scaffold_2 . CDS 405318 405543 . + 0 ID=Phyra73068;Parent=Phyra73068;rank=2 scaffold_2 . exon 405318 405543 . + . ID=Phyra73068.2;Parent=Phyra73068;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 405564 405580 . + 0 ID=Phyra73068;Parent=Phyra73068;rank=3 scaffold_2 . exon 405564 405580 . + . ID=Phyra73068.3;Parent=Phyra73068;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 ensembl protein_coding_gene 406080 408806 . - . ID=Phyra73069;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000134;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 406080 408806 . - . ID=Phyra73069;Parent=Phyra73069;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 406080 408806 . - 0 ID=Phyra73069;Parent=Phyra73069;rank=1 scaffold_2 . exon 406080 408806 . - . ID=Phyra73069.1;Parent=Phyra73069;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 409503 414993 . + . ID=Phyra93463;biotype=protein_coding;external_name=C_scaffold_2000065;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 409503 414993 . + . ID=Phyra93463;Parent=Phyra93463;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 409503 409701 . + 0 ID=Phyra93463;Parent=Phyra93463;rank=1 scaffold_2 . exon 409503 409701 . + . ID=Phyra93463.1;Parent=Phyra93463;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 409835 409879 . + 0 ID=Phyra93463;Parent=Phyra93463;rank=2 scaffold_2 . CDS 409971 410234 . + 0 ID=Phyra93463;Parent=Phyra93463;rank=3 scaffold_2 . CDS 410322 410740 . + 0 ID=Phyra93463;Parent=Phyra93463;rank=4 scaffold_2 . CDS 410810 411097 . + 0 ID=Phyra93463;Parent=Phyra93463;rank=5 scaffold_2 . CDS 411403 411597 . + 0 ID=Phyra93463;Parent=Phyra93463;rank=6 scaffold_2 . CDS 411682 411804 . + 0 ID=Phyra93463;Parent=Phyra93463;rank=7 scaffold_2 . CDS 411847 412069 . + 0 ID=Phyra93463;Parent=Phyra93463;rank=8 scaffold_2 . CDS 412139 412263 . + 0 ID=Phyra93463;Parent=Phyra93463;rank=9 scaffold_2 . CDS 412657 412795 . + 0 ID=Phyra93463;Parent=Phyra93463;rank=10 scaffold_2 . CDS 412928 413052 . + 0 ID=Phyra93463;Parent=Phyra93463;rank=11 scaffold_2 . CDS 413146 413554 . + 0 ID=Phyra93463;Parent=Phyra93463;rank=12 scaffold_2 . CDS 413594 414072 . + 0 ID=Phyra93463;Parent=Phyra93463;rank=13 scaffold_2 . CDS 414326 414529 . + 0 ID=Phyra93463;Parent=Phyra93463;rank=14 scaffold_2 . CDS 414595 414803 . + 0 ID=Phyra93463;Parent=Phyra93463;rank=15 scaffold_2 . CDS 414882 414993 . + 0 ID=Phyra93463;Parent=Phyra93463;rank=16 scaffold_2 . exon 409835 409879 . + . ID=Phyra93463.2;Parent=Phyra93463;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . exon 409971 410234 . + . ID=Phyra93463.3;Parent=Phyra93463;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2 . exon 410322 410740 . + . ID=Phyra93463.4;Parent=Phyra93463;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . exon 410810 411097 . + . ID=Phyra93463.5;Parent=Phyra93463;constitutive=1;rank=5 scaffold_2 . exon 411403 411597 . + . ID=Phyra93463.6;Parent=Phyra93463;constitutive=1;rank=6 scaffold_2 . exon 411682 411804 . + . ID=Phyra93463.7;Parent=Phyra93463;constitutive=1;rank=7 scaffold_2 . exon 411847 412069 . + . ID=Phyra93463.8;Parent=Phyra93463;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_2 . exon 412139 412263 . + . ID=Phyra93463.9;Parent=Phyra93463;constitutive=1;ensembl_phase=1;rank=9 scaffold_2 . exon 412657 412795 . + . ID=Phyra93463.10;Parent=Phyra93463;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_2 . exon 412928 413052 . + . ID=Phyra93463.11;Parent=Phyra93463;constitutive=1;ensembl_phase=1;rank=11 scaffold_2 . exon 413146 413554 . + . ID=Phyra93463.12;Parent=Phyra93463;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_2 . exon 413594 414072 . + . ID=Phyra93463.13;Parent=Phyra93463;constitutive=1;ensembl_phase=1;rank=13 scaffold_2 . exon 414326 414529 . + . ID=Phyra93463.14;Parent=Phyra93463;constitutive=1;rank=14 scaffold_2 . exon 414595 414803 . + . ID=Phyra93463.15;Parent=Phyra93463;constitutive=1;ensembl_end_phase=2;rank=15 scaffold_2 . exon 414882 414993 . + . ID=Phyra93463.16;Parent=Phyra93463;constitutive=1;ensembl_phase=2;rank=16 scaffold_2 ensembl protein_coding_gene 415166 415510 . - . ID=Phyra93466;biotype=protein_coding;external_name=C_scaffold_2000068;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 415166 415510 . - . ID=Phyra93466;Parent=Phyra93466;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 415166 415378 . - 0 ID=Phyra93466;Parent=Phyra93466;rank=2 scaffold_2 . exon 415166 415378 . - . ID=Phyra93466.2;Parent=Phyra93466;constitutive=1;rank=2 scaffold_2 . CDS 415445 415510 . - 0 ID=Phyra93466;Parent=Phyra93466;rank=1 scaffold_2 . exon 415445 415510 . - . ID=Phyra93466.1;Parent=Phyra93466;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 415966 419309 . + . ID=Phyra93467;biotype=protein_coding;external_name=C_scaffold_2000069;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 415966 419309 . + . ID=Phyra93467;Parent=Phyra93467;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 415966 416167 . + 0 ID=Phyra93467;Parent=Phyra93467;rank=1 scaffold_2 . exon 415966 416167 . + . ID=Phyra93467.1;Parent=Phyra93467;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 416414 416674 . + 0 ID=Phyra93467;Parent=Phyra93467;rank=2 scaffold_2 . exon 416414 416674 . + . ID=Phyra93467.2;Parent=Phyra93467;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 416708 417222 . + 0 ID=Phyra93467;Parent=Phyra93467;rank=3 scaffold_2 . exon 416708 417222 . + . ID=Phyra93467.3;Parent=Phyra93467;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 417459 419309 . + 0 ID=Phyra93467;Parent=Phyra93467;rank=4 scaffold_2 . exon 417459 419309 . + . ID=Phyra93467.4;Parent=Phyra93467;constitutive=1;rank=4 scaffold_2 . repeat_region 422824 422862 . ? . description=trf scaffold_2 . biological_region 423316 423317 0.999 - . logic_name=eponine scaffold_2 . biological_region 425028 425030 0.999 - . logic_name=eponine scaffold_2 . biological_region 428469 428473 0.999 + . logic_name=eponine scaffold_2 . biological_region 428874 428875 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 420025 421094 . - . ID=Phyra73074;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000139;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 420025 421094 . - . ID=Phyra73074;Parent=Phyra73074;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 420025 420069 . - 0 ID=Phyra73074;Parent=Phyra73074;rank=3 scaffold_2 . exon 420025 420069 . - . ID=Phyra73074.3;Parent=Phyra73074;constitutive=1;rank=3 scaffold_2 . CDS 420143 420183 . - 0 ID=Phyra73074;Parent=Phyra73074;rank=2 scaffold_2 . exon 420143 420183 . - . ID=Phyra73074.2;Parent=Phyra73074;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 420281 421094 . - 0 ID=Phyra73074;Parent=Phyra73074;rank=1 scaffold_2 . exon 420281 421094 . - . ID=Phyra73074.1;Parent=Phyra73074;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 427779 428573 . - . ID=Phyra73077;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000142;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 427779 428573 . - . ID=Phyra73077;Parent=Phyra73077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 427779 428573 . - 0 ID=Phyra73077;Parent=Phyra73077;rank=1 scaffold_2 . exon 427779 428573 . - . ID=Phyra73077.1;Parent=Phyra73077;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 421704 422927 . - . ID=Phyra93469;biotype=protein_coding;external_name=C_scaffold_2000071;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 421704 422927 . - . ID=Phyra93469;Parent=Phyra93469;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 421704 422544 . - 0 ID=Phyra93469;Parent=Phyra93469;rank=2 scaffold_2 . exon 421704 422544 . - . ID=Phyra93469.2;Parent=Phyra93469;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 422569 422927 . - 0 ID=Phyra93469;Parent=Phyra93469;rank=1 scaffold_2 . exon 422569 422927 . - . ID=Phyra93469.1;Parent=Phyra93469;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 423553 427486 . + . ID=Phyra93470;biotype=protein_coding;external_name=C_scaffold_2000072;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 423553 427486 . + . ID=Phyra93470;Parent=Phyra93470;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 423553 423577 . + 0 ID=Phyra93470;Parent=Phyra93470;rank=1 scaffold_2 . exon 423553 423577 . + . ID=Phyra93470.1;Parent=Phyra93470;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 423674 423752 . + 0 ID=Phyra93470;Parent=Phyra93470;rank=2 scaffold_2 . exon 423674 423752 . + . ID=Phyra93470.2;Parent=Phyra93470;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 423820 423871 . + 0 ID=Phyra93470;Parent=Phyra93470;rank=3 scaffold_2 . exon 423820 423871 . + . ID=Phyra93470.3;Parent=Phyra93470;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 423943 424005 . + 0 ID=Phyra93470;Parent=Phyra93470;rank=4 scaffold_2 . exon 423943 424005 . + . ID=Phyra93470.4;Parent=Phyra93470;constitutive=1;rank=4 scaffold_2 . CDS 424077 424118 . + 0 ID=Phyra93470;Parent=Phyra93470;rank=5 scaffold_2 . exon 424077 424118 . + . ID=Phyra93470.5;Parent=Phyra93470;constitutive=1;rank=5 scaffold_2 . CDS 424194 424271 . + 0 ID=Phyra93470;Parent=Phyra93470;rank=6 scaffold_2 . exon 424194 424271 . + . ID=Phyra93470.6;Parent=Phyra93470;constitutive=1;rank=6 scaffold_2 . CDS 424341 424428 . + 0 ID=Phyra93470;Parent=Phyra93470;rank=7 scaffold_2 . exon 424341 424428 . + . ID=Phyra93470.7;Parent=Phyra93470;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_2 . CDS 424502 424625 . + 0 ID=Phyra93470;Parent=Phyra93470;rank=8 scaffold_2 . exon 424502 424625 . + . ID=Phyra93470.8;Parent=Phyra93470;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_2 . CDS 424699 424791 . + 0 ID=Phyra93470;Parent=Phyra93470;rank=9 scaffold_2 . exon 424699 424791 . + . ID=Phyra93470.9;Parent=Phyra93470;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_2 . CDS 424921 425165 . + 0 ID=Phyra93470;Parent=Phyra93470;rank=10 scaffold_2 . exon 424921 425165 . + . ID=Phyra93470.10;Parent=Phyra93470;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_2 . CDS 425257 425317 . + 0 ID=Phyra93470;Parent=Phyra93470;rank=11 scaffold_2 . exon 425257 425317 . + . ID=Phyra93470.11;Parent=Phyra93470;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_2 . CDS 425392 425548 . + 0 ID=Phyra93470;Parent=Phyra93470;rank=12 scaffold_2 . exon 425392 425548 . + . ID=Phyra93470.12;Parent=Phyra93470;constitutive=1;ensembl_phase=2;rank=12 scaffold_2 . CDS 425626 426174 . + 0 ID=Phyra93470;Parent=Phyra93470;rank=13 scaffold_2 . exon 425626 426174 . + . ID=Phyra93470.13;Parent=Phyra93470;constitutive=1;rank=13 scaffold_2 . CDS 426251 426690 . + 0 ID=Phyra93470;Parent=Phyra93470;rank=14 scaffold_2 . exon 426251 426690 . + . ID=Phyra93470.14;Parent=Phyra93470;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_2 . CDS 426757 427486 . + 0 ID=Phyra93470;Parent=Phyra93470;rank=15 scaffold_2 . exon 426757 427486 . + . ID=Phyra93470.15;Parent=Phyra93470;constitutive=1;ensembl_phase=2;rank=15 scaffold_2 ensembl protein_coding_gene 429983 432438 . - . ID=Phyra73078;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000143;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 429983 432438 . - . ID=Phyra73078;Parent=Phyra73078;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 429983 432273 . - 0 ID=Phyra73078;Parent=Phyra73078;rank=2 scaffold_2 . exon 429983 432273 . - . ID=Phyra73078.2;Parent=Phyra73078;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 432339 432438 . - 0 ID=Phyra73078;Parent=Phyra73078;rank=1 scaffold_2 . exon 432339 432438 . - . ID=Phyra73078.1;Parent=Phyra73078;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 435515 440858 . + . ID=Phyra93474;biotype=protein_coding;external_name=C_scaffold_2000076;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 435515 440858 . + . ID=Phyra93474;Parent=Phyra93474;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 435515 435916 . + 0 ID=Phyra93474;Parent=Phyra93474;rank=1 scaffold_2 . exon 435515 435916 . + . ID=Phyra93474.1;Parent=Phyra93474;constitutive=1;rank=1 scaffold_2 . CDS 436199 436264 . + 0 ID=Phyra93474;Parent=Phyra93474;rank=2 scaffold_2 . exon 436199 436264 . + . ID=Phyra93474.2;Parent=Phyra93474;constitutive=1;rank=2 scaffold_2 . CDS 437114 437326 . + 0 ID=Phyra93474;Parent=Phyra93474;rank=3 scaffold_2 . exon 437114 437326 . + . ID=Phyra93474.3;Parent=Phyra93474;constitutive=1;rank=3 scaffold_2 . CDS 437391 437582 . + 0 ID=Phyra93474;Parent=Phyra93474;rank=4 scaffold_2 . exon 437391 437582 . + . ID=Phyra93474.4;Parent=Phyra93474;constitutive=1;rank=4 scaffold_2 . CDS 437667 437733 . + 0 ID=Phyra93474;Parent=Phyra93474;rank=5 scaffold_2 . exon 437667 437733 . + . ID=Phyra93474.5;Parent=Phyra93474;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_2 . CDS 438163 438421 . + 0 ID=Phyra93474;Parent=Phyra93474;rank=6 scaffold_2 . exon 438163 438421 . + . ID=Phyra93474.6;Parent=Phyra93474;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_2 . CDS 438662 439019 . + 0 ID=Phyra93474;Parent=Phyra93474;rank=7 scaffold_2 . exon 438662 439019 . + . ID=Phyra93474.7;Parent=Phyra93474;constitutive=1;ensembl_phase=2;rank=7 scaffold_2 . CDS 439299 440858 . + 0 ID=Phyra93474;Parent=Phyra93474;rank=8 scaffold_2 . exon 439299 440858 . + . ID=Phyra93474.8;Parent=Phyra93474;constitutive=1;rank=8 scaffold_2 . repeat_region 440593 440673 . ? . description=trf scaffold_2 ensembl protein_coding_gene 441493 441714 . + . ID=Phyra71072;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000013;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 441493 441714 . + . ID=Phyra71072;Parent=Phyra71072;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 441493 441714 . + 0 ID=Phyra71072;Parent=Phyra71072;rank=1 scaffold_2 . exon 441493 441714 . + . ID=Phyra71072.1;Parent=Phyra71072;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 440917 441388 . - . ID=Phyra73080;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000145;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 440917 441388 . - . ID=Phyra73080;Parent=Phyra73080;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 440917 441075 . - 0 ID=Phyra73080;Parent=Phyra73080;rank=3 scaffold_2 . exon 440917 441075 . - . ID=Phyra73080.3;Parent=Phyra73080;constitutive=1;rank=3 scaffold_2 . CDS 441132 441165 . - 0 ID=Phyra73080;Parent=Phyra73080;rank=2 scaffold_2 . exon 441132 441165 . - . ID=Phyra73080.2;Parent=Phyra73080;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 441204 441388 . - 0 ID=Phyra73080;Parent=Phyra73080;rank=1 scaffold_2 . exon 441204 441388 . - . ID=Phyra73080.1;Parent=Phyra73080;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 442557 446075 . + . ID=Phyra73082;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000147;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 442557 446075 . + . ID=Phyra73082;Parent=Phyra73082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 442557 442682 . + 0 ID=Phyra73082;Parent=Phyra73082;rank=1 scaffold_2 . exon 442557 442682 . + . ID=Phyra73082.1;Parent=Phyra73082;constitutive=1;rank=1 scaffold_2 . CDS 442746 442985 . + 0 ID=Phyra73082;Parent=Phyra73082;rank=2 scaffold_2 . exon 442746 442985 . + . ID=Phyra73082.2;Parent=Phyra73082;constitutive=1;rank=2 scaffold_2 . CDS 443046 443098 . + 0 ID=Phyra73082;Parent=Phyra73082;rank=3 scaffold_2 . exon 443046 443098 . + . ID=Phyra73082.3;Parent=Phyra73082;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 443170 443383 . + 0 ID=Phyra73082;Parent=Phyra73082;rank=4 scaffold_2 . exon 443170 443383 . + . ID=Phyra73082.4;Parent=Phyra73082;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 443448 443572 . + 0 ID=Phyra73082;Parent=Phyra73082;rank=5 scaffold_2 . exon 443448 443572 . + . ID=Phyra73082.5;Parent=Phyra73082;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_2 . CDS 443750 443777 . + 0 ID=Phyra73082;Parent=Phyra73082;rank=6 scaffold_2 . exon 443750 443777 . + . ID=Phyra73082.6;Parent=Phyra73082;constitutive=1;ensembl_phase=2;rank=6 scaffold_2 . CDS 443867 443965 . + 0 ID=Phyra73082;Parent=Phyra73082;rank=7 scaffold_2 . exon 443867 443965 . + . ID=Phyra73082.7;Parent=Phyra73082;constitutive=1;rank=7 scaffold_2 . CDS 444024 444186 . + 0 ID=Phyra73082;Parent=Phyra73082;rank=8 scaffold_2 . exon 444024 444186 . + . ID=Phyra73082.8;Parent=Phyra73082;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_2 . CDS 444259 444401 . + 0 ID=Phyra73082;Parent=Phyra73082;rank=9 scaffold_2 . exon 444259 444401 . + . ID=Phyra73082.9;Parent=Phyra73082;constitutive=1;ensembl_phase=1;rank=9 scaffold_2 . CDS 444488 444508 . + 0 ID=Phyra73082;Parent=Phyra73082;rank=10 scaffold_2 . exon 444488 444508 . + . ID=Phyra73082.10;Parent=Phyra73082;constitutive=1;rank=10 scaffold_2 . CDS 444545 444967 . + 0 ID=Phyra73082;Parent=Phyra73082;rank=11 scaffold_2 . exon 444545 444967 . + . ID=Phyra73082.11;Parent=Phyra73082;constitutive=1;rank=11 scaffold_2 . CDS 445115 445131 . + 0 ID=Phyra73082;Parent=Phyra73082;rank=12 scaffold_2 . exon 445115 445131 . + . ID=Phyra73082.12;Parent=Phyra73082;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_2 . CDS 445195 445243 . + 0 ID=Phyra73082;Parent=Phyra73082;rank=13 scaffold_2 . exon 445195 445243 . + . ID=Phyra73082.13;Parent=Phyra73082;constitutive=1;ensembl_phase=2;rank=13 scaffold_2 . CDS 445458 445567 . + 0 ID=Phyra73082;Parent=Phyra73082;rank=14 scaffold_2 . exon 445458 445567 . + . ID=Phyra73082.14;Parent=Phyra73082;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_2 . CDS 445644 445706 . + 0 ID=Phyra73082;Parent=Phyra73082;rank=15 scaffold_2 . exon 445644 445706 . + . ID=Phyra73082.15;Parent=Phyra73082;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=15 scaffold_2 . CDS 445769 446075 . + 0 ID=Phyra73082;Parent=Phyra73082;rank=16 scaffold_2 . exon 445769 446075 . + . ID=Phyra73082.16;Parent=Phyra73082;constitutive=1;ensembl_phase=2;rank=16 scaffold_2 ensembl protein_coding_gene 446323 446873 . + . ID=Phyra73083;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000148;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 446323 446873 . + . ID=Phyra73083;Parent=Phyra73083;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 446323 446547 . + 0 ID=Phyra73083;Parent=Phyra73083;rank=1 scaffold_2 . exon 446323 446547 . + . ID=Phyra73083.1;Parent=Phyra73083;constitutive=1;rank=1 scaffold_2 . CDS 446595 446873 . + 0 ID=Phyra73083;Parent=Phyra73083;rank=2 scaffold_2 . exon 446595 446873 . + . ID=Phyra73083.2;Parent=Phyra73083;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 449121 453447 . + . ID=Phyra93476;biotype=protein_coding;external_name=C_scaffold_2000078;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 449121 453447 . + . ID=Phyra93476;Parent=Phyra93476;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 449121 449230 . + 0 ID=Phyra93476;Parent=Phyra93476;rank=1 scaffold_2 . exon 449121 449230 . + . ID=Phyra93476.1;Parent=Phyra93476;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 449261 449672 . + 0 ID=Phyra93476;Parent=Phyra93476;rank=2 scaffold_2 . exon 449261 449672 . + . ID=Phyra93476.2;Parent=Phyra93476;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 449823 450881 . + 0 ID=Phyra93476;Parent=Phyra93476;rank=3 scaffold_2 . CDS 451274 451417 . + 0 ID=Phyra93476;Parent=Phyra93476;rank=4 scaffold_2 . CDS 451486 451558 . + 0 ID=Phyra93476;Parent=Phyra93476;rank=5 scaffold_2 . CDS 451631 451716 . + 0 ID=Phyra93476;Parent=Phyra93476;rank=6 scaffold_2 . CDS 451779 452186 . + 0 ID=Phyra93476;Parent=Phyra93476;rank=7 scaffold_2 . CDS 452269 452352 . + 0 ID=Phyra93476;Parent=Phyra93476;rank=8 scaffold_2 . CDS 452429 452539 . + 0 ID=Phyra93476;Parent=Phyra93476;rank=9 scaffold_2 . CDS 452621 452866 . + 0 ID=Phyra93476;Parent=Phyra93476;rank=10 scaffold_2 . CDS 452953 453132 . + 0 ID=Phyra93476;Parent=Phyra93476;rank=11 scaffold_2 . CDS 453200 453258 . + 0 ID=Phyra93476;Parent=Phyra93476;rank=12 scaffold_2 . CDS 453333 453447 . + 0 ID=Phyra93476;Parent=Phyra93476;rank=13 scaffold_2 . biological_region 451132 451134 0.999 + . logic_name=eponine scaffold_2 . biological_region 454579 454579 0.999 - . logic_name=eponine scaffold_2 ensembl pseudogene 454805 456319 . - . ID=Phyra43832;biotype=pseudogene;external_name=gwEuk.2.83.1;logic_name=jgi_phyra1 scaffold_2 ensembl pseudogene 454805 456319 . - . ID=Phyra43832;Parent=Phyra43832;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_2 . exon 454805 455132 . - . ID=Phyra43832.6;Parent=Phyra43832;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_2 . exon 455204 455262 . - . ID=Phyra43832.5;Parent=Phyra43832;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_2 . exon 455350 455453 . - . ID=Phyra43832.4;Parent=Phyra43832;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . exon 455521 455879 . - . ID=Phyra43832.3;Parent=Phyra43832;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . exon 455962 456121 . - . ID=Phyra43832.2;Parent=Phyra43832;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . exon 456200 456319 . - . ID=Phyra43832.1;Parent=Phyra43832;constitutive=1;rank=1 scaffold_2 . exon 449823 450881 . + . ID=Phyra93476.3;Parent=Phyra93476;constitutive=1;rank=3 scaffold_2 . exon 451274 451417 . + . ID=Phyra93476.4;Parent=Phyra93476;constitutive=1;rank=4 scaffold_2 . exon 451486 451558 . + . ID=Phyra93476.5;Parent=Phyra93476;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_2 . exon 451631 451716 . + . ID=Phyra93476.6;Parent=Phyra93476;constitutive=1;ensembl_phase=1;rank=6 scaffold_2 . exon 451779 452186 . + . ID=Phyra93476.7;Parent=Phyra93476;constitutive=1;rank=7 scaffold_2 . exon 452269 452352 . + . ID=Phyra93476.8;Parent=Phyra93476;constitutive=1;rank=8 scaffold_2 . exon 452429 452539 . + . ID=Phyra93476.9;Parent=Phyra93476;constitutive=1;rank=9 scaffold_2 . exon 452621 452866 . + . ID=Phyra93476.10;Parent=Phyra93476;constitutive=1;rank=10 scaffold_2 . exon 452953 453132 . + . ID=Phyra93476.11;Parent=Phyra93476;constitutive=1;rank=11 scaffold_2 . exon 453200 453258 . + . ID=Phyra93476.12;Parent=Phyra93476;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_2 . exon 453333 453447 . + . ID=Phyra93476.13;Parent=Phyra93476;constitutive=1;ensembl_phase=2;rank=13 scaffold_2 ensembl protein_coding_gene 453602 454517 . - . ID=Phyra93477;biotype=protein_coding;external_name=C_scaffold_2000079;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 453602 454517 . - . ID=Phyra93477;Parent=Phyra93477;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 453602 454347 . - 0 ID=Phyra93477;Parent=Phyra93477;rank=2 scaffold_2 . exon 453602 454347 . - . ID=Phyra93477.2;Parent=Phyra93477;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 454406 454517 . - 0 ID=Phyra93477;Parent=Phyra93477;rank=1 scaffold_2 . exon 454406 454517 . - . ID=Phyra93477.1;Parent=Phyra93477;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . repeat_region 468622 468629 . ? . description=dust scaffold_2 ensembl protein_coding_gene 468131 469449 . + . ID=Phyra73087;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000152;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 468131 469449 . + . ID=Phyra73087;Parent=Phyra73087;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 468131 468286 . + 0 ID=Phyra73087;Parent=Phyra73087;rank=1 scaffold_2 . exon 468131 468286 . + . ID=Phyra73087.1;Parent=Phyra73087;constitutive=1;rank=1 scaffold_2 . CDS 468349 468543 . + 0 ID=Phyra73087;Parent=Phyra73087;rank=2 scaffold_2 . exon 468349 468543 . + . ID=Phyra73087.2;Parent=Phyra73087;constitutive=1;rank=2 scaffold_2 . CDS 468622 468738 . + 0 ID=Phyra73087;Parent=Phyra73087;rank=3 scaffold_2 . exon 468622 468738 . + . ID=Phyra73087.3;Parent=Phyra73087;constitutive=1;rank=3 scaffold_2 . CDS 468814 468944 . + 0 ID=Phyra73087;Parent=Phyra73087;rank=4 scaffold_2 . exon 468814 468944 . + . ID=Phyra73087.4;Parent=Phyra73087;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . CDS 469077 469449 . + 0 ID=Phyra73087;Parent=Phyra73087;rank=5 scaffold_2 . exon 469077 469449 . + . ID=Phyra73087.5;Parent=Phyra73087;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . biological_region 472252 472253 0.999 - . logic_name=eponine scaffold_2 . biological_region 472307 472309 0.999 + . logic_name=eponine scaffold_2 . biological_region 472898 472900 0.999 + . logic_name=eponine scaffold_2 . biological_region 478958 478958 0.999 - . logic_name=eponine scaffold_2 . biological_region 479116 479122 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 475805 477668 . - . ID=Phyra71073;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000014;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 475805 477668 . - . ID=Phyra71073;Parent=Phyra71073;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 475805 476029 . - 0 ID=Phyra71073;Parent=Phyra71073;rank=11 scaffold_2 . exon 475805 476029 . - . ID=Phyra71073.11;Parent=Phyra71073;constitutive=1;rank=11 scaffold_2 . CDS 476102 476176 . - 0 ID=Phyra71073;Parent=Phyra71073;rank=10 scaffold_2 . exon 476102 476176 . - . ID=Phyra71073.10;Parent=Phyra71073;constitutive=1;rank=10 scaffold_2 . CDS 476240 476317 . - 0 ID=Phyra71073;Parent=Phyra71073;rank=9 scaffold_2 . exon 476240 476317 . - . ID=Phyra71073.9;Parent=Phyra71073;constitutive=1;rank=9 scaffold_2 . CDS 476384 476550 . - 0 ID=Phyra71073;Parent=Phyra71073;rank=8 scaffold_2 . exon 476384 476550 . - . ID=Phyra71073.8;Parent=Phyra71073;constitutive=1;ensembl_phase=1;rank=8 scaffold_2 . CDS 476619 476625 . - 0 ID=Phyra71073;Parent=Phyra71073;rank=7 scaffold_2 . exon 476619 476625 . - . ID=Phyra71073.7;Parent=Phyra71073;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_2 . CDS 476713 476973 . - 0 ID=Phyra71073;Parent=Phyra71073;rank=6 scaffold_2 . exon 476713 476973 . - . ID=Phyra71073.6;Parent=Phyra71073;constitutive=1;rank=6 scaffold_2 . CDS 477045 477141 . - 0 ID=Phyra71073;Parent=Phyra71073;rank=5 scaffold_2 . exon 477045 477141 . - . ID=Phyra71073.5;Parent=Phyra71073;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 477221 477299 . - 0 ID=Phyra71073;Parent=Phyra71073;rank=4 scaffold_2 . exon 477221 477299 . - . ID=Phyra71073.4;Parent=Phyra71073;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_2 . CDS 477377 477416 . - 0 ID=Phyra71073;Parent=Phyra71073;rank=3 scaffold_2 . exon 477377 477416 . - . ID=Phyra71073.3;Parent=Phyra71073;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 477482 477570 . - 0 ID=Phyra71073;Parent=Phyra71073;rank=2 scaffold_2 . exon 477482 477570 . - . ID=Phyra71073.2;Parent=Phyra71073;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 477638 477668 . - 0 ID=Phyra71073;Parent=Phyra71073;rank=1 scaffold_2 . exon 477638 477668 . - . ID=Phyra71073.1;Parent=Phyra71073;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 471486 472979 . - . ID=Phyra73088;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000153;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 471486 472979 . - . ID=Phyra73088;Parent=Phyra73088;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 471486 472979 . - 0 ID=Phyra73088;Parent=Phyra73088;rank=1 scaffold_2 . exon 471486 472979 . - . ID=Phyra73088.1;Parent=Phyra73088;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 478278 479404 . + . ID=Phyra73091;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000156;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 478278 479404 . + . ID=Phyra73091;Parent=Phyra73091;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 478278 478358 . + 0 ID=Phyra73091;Parent=Phyra73091;rank=1 scaffold_2 . exon 478278 478358 . + . ID=Phyra73091.1;Parent=Phyra73091;constitutive=1;rank=1 scaffold_2 . CDS 478405 478561 . + 0 ID=Phyra73091;Parent=Phyra73091;rank=2 scaffold_2 . exon 478405 478561 . + . ID=Phyra73091.2;Parent=Phyra73091;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 478633 478745 . + 0 ID=Phyra73091;Parent=Phyra73091;rank=3 scaffold_2 . exon 478633 478745 . + . ID=Phyra73091.3;Parent=Phyra73091;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 478818 479015 . + 0 ID=Phyra73091;Parent=Phyra73091;rank=4 scaffold_2 . exon 478818 479015 . + . ID=Phyra73091.4;Parent=Phyra73091;constitutive=1;rank=4 scaffold_2 . CDS 479090 479404 . + 0 ID=Phyra73091;Parent=Phyra73091;rank=5 scaffold_2 . exon 479090 479404 . + . ID=Phyra73091.5;Parent=Phyra73091;constitutive=1;rank=5 scaffold_2 ensembl protein_coding_gene 473318 475481 . + . ID=Phyra93480;biotype=protein_coding;external_name=C_scaffold_2000082;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 473318 475481 . + . ID=Phyra93480;Parent=Phyra93480;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 473318 474705 . + 0 ID=Phyra93480;Parent=Phyra93480;rank=1 scaffold_2 . exon 473318 474705 . + . ID=Phyra93480.1;Parent=Phyra93480;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 474804 474848 . + 0 ID=Phyra93480;Parent=Phyra93480;rank=2 scaffold_2 . exon 474804 474848 . + . ID=Phyra93480.2;Parent=Phyra93480;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 474919 474983 . + 0 ID=Phyra93480;Parent=Phyra93480;rank=3 scaffold_2 . exon 474919 474983 . + . ID=Phyra93480.3;Parent=Phyra93480;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 475053 475278 . + 0 ID=Phyra93480;Parent=Phyra93480;rank=4 scaffold_2 . exon 475053 475278 . + . ID=Phyra93480.4;Parent=Phyra93480;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_2 . CDS 475355 475481 . + 0 ID=Phyra93480;Parent=Phyra93480;rank=5 scaffold_2 . exon 475355 475481 . + . ID=Phyra93480.5;Parent=Phyra93480;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . repeat_region 484215 484225 . ? . description=dust scaffold_2 ensembl protein_coding_gene 479888 480892 . + . ID=Phyra71074;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000015;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 479888 480892 . + . ID=Phyra71074;Parent=Phyra71074;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 479888 480892 . + 0 ID=Phyra71074;Parent=Phyra71074;rank=1 scaffold_2 . exon 479888 480892 . + . ID=Phyra71074.1;Parent=Phyra71074;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 481294 483120 . + . ID=Phyra73093;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000158;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 481294 483120 . + . ID=Phyra73093;Parent=Phyra73093;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 481294 481963 . + 0 ID=Phyra73093;Parent=Phyra73093;rank=1 scaffold_2 . exon 481294 481963 . + . ID=Phyra73093.1;Parent=Phyra73093;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 482049 482256 . + 0 ID=Phyra73093;Parent=Phyra73093;rank=2 scaffold_2 . exon 482049 482256 . + . ID=Phyra73093.2;Parent=Phyra73093;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 482337 483120 . + 0 ID=Phyra73093;Parent=Phyra73093;rank=3 scaffold_2 . exon 482337 483120 . + . ID=Phyra73093.3;Parent=Phyra73093;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 ensembl protein_coding_gene 485014 485632 . + . ID=Phyra73094;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000159;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 485014 485632 . + . ID=Phyra73094;Parent=Phyra73094;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 485014 485096 . + 0 ID=Phyra73094;Parent=Phyra73094;rank=1 scaffold_2 . exon 485014 485096 . + . ID=Phyra73094.1;Parent=Phyra73094;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 485170 485632 . + 0 ID=Phyra73094;Parent=Phyra73094;rank=2 scaffold_2 . exon 485170 485632 . + . ID=Phyra73094.2;Parent=Phyra73094;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 ensembl protein_coding_gene 486768 488431 . + . ID=Phyra93482;biotype=protein_coding;external_name=C_scaffold_2000084;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 486768 488431 . + . ID=Phyra93482;Parent=Phyra93482;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 486768 486908 . + 0 ID=Phyra93482;Parent=Phyra93482;rank=1 scaffold_2 . exon 486768 486908 . + . ID=Phyra93482.1;Parent=Phyra93482;constitutive=1;rank=1 scaffold_2 . CDS 487192 487248 . + 0 ID=Phyra93482;Parent=Phyra93482;rank=2 scaffold_2 . exon 487192 487248 . + . ID=Phyra93482.2;Parent=Phyra93482;constitutive=1;rank=2 scaffold_2 . CDS 487322 487449 . + 0 ID=Phyra93482;Parent=Phyra93482;rank=3 scaffold_2 . exon 487322 487449 . + . ID=Phyra93482.3;Parent=Phyra93482;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 487498 487568 . + 0 ID=Phyra93482;Parent=Phyra93482;rank=4 scaffold_2 . exon 487498 487568 . + . ID=Phyra93482.4;Parent=Phyra93482;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 487590 487844 . + 0 ID=Phyra93482;Parent=Phyra93482;rank=5 scaffold_2 . exon 487590 487844 . + . ID=Phyra93482.5;Parent=Phyra93482;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 487866 487973 . + 0 ID=Phyra93482;Parent=Phyra93482;rank=6 scaffold_2 . exon 487866 487973 . + . ID=Phyra93482.6;Parent=Phyra93482;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_2 . CDS 488052 488192 . + 0 ID=Phyra93482;Parent=Phyra93482;rank=7 scaffold_2 . exon 488052 488192 . + . ID=Phyra93482.7;Parent=Phyra93482;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_2 . CDS 488259 488431 . + 0 ID=Phyra93482;Parent=Phyra93482;rank=8 scaffold_2 . exon 488259 488431 . + . ID=Phyra93482.8;Parent=Phyra93482;constitutive=1;ensembl_phase=1;rank=8 scaffold_2 ensembl protein_coding_gene 488512 489453 . - . ID=Phyra93483;biotype=protein_coding;external_name=C_scaffold_2000085;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 488512 489453 . - . ID=Phyra93483;Parent=Phyra93483;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 488512 489453 . - 0 ID=Phyra93483;Parent=Phyra93483;rank=1 scaffold_2 . exon 488512 489453 . - . ID=Phyra93483.1;Parent=Phyra93483;constitutive=1;rank=1 scaffold_2 . repeat_region 497430 497474 . ? . description=trf scaffold_2 . biological_region 497442 497447 0.999 + . logic_name=eponine scaffold_2 . biological_region 498267 498273 0.999 + . logic_name=eponine scaffold_2 . biological_region 499142 499145 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 496030 497031 . - . ID=Phyra71075;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000016;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 496030 497031 . - . ID=Phyra71075;Parent=Phyra71075;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 496030 496451 . - 0 ID=Phyra71075;Parent=Phyra71075;rank=3 scaffold_2 . exon 496030 496451 . - . ID=Phyra71075.3;Parent=Phyra71075;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 496521 496590 . - 0 ID=Phyra71075;Parent=Phyra71075;rank=2 scaffold_2 . exon 496521 496590 . - . ID=Phyra71075.2;Parent=Phyra71075;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 496660 497031 . - 0 ID=Phyra71075;Parent=Phyra71075;rank=1 scaffold_2 . exon 496660 497031 . - . ID=Phyra71075.1;Parent=Phyra71075;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 490076 495821 . + . ID=Phyra73096;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000161;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 490076 495821 . + . ID=Phyra73096;Parent=Phyra73096;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 490076 490594 . + 0 ID=Phyra73096;Parent=Phyra73096;rank=1 scaffold_2 . exon 490076 490594 . + . ID=Phyra73096.1;Parent=Phyra73096;constitutive=1;rank=1 scaffold_2 . CDS 490667 492118 . + 0 ID=Phyra73096;Parent=Phyra73096;rank=2 scaffold_2 . exon 490667 492118 . + . ID=Phyra73096.2;Parent=Phyra73096;constitutive=1;rank=2 scaffold_2 . CDS 492188 495527 . + 0 ID=Phyra73096;Parent=Phyra73096;rank=3 scaffold_2 . exon 492188 495527 . + . ID=Phyra73096.3;Parent=Phyra73096;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 495607 495821 . + 0 ID=Phyra73096;Parent=Phyra73096;rank=4 scaffold_2 . exon 495607 495821 . + . ID=Phyra73096.4;Parent=Phyra73096;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 ensembl protein_coding_gene 497332 499207 . - . ID=Phyra73098;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000163;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 497332 499207 . - . ID=Phyra73098;Parent=Phyra73098;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 497332 498449 . - 0 ID=Phyra73098;Parent=Phyra73098;rank=3 scaffold_2 . exon 497332 498449 . - . ID=Phyra73098.3;Parent=Phyra73098;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 498521 498954 . - 0 ID=Phyra73098;Parent=Phyra73098;rank=2 scaffold_2 . exon 498521 498954 . - . ID=Phyra73098.2;Parent=Phyra73098;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 499032 499207 . - 0 ID=Phyra73098;Parent=Phyra73098;rank=1 scaffold_2 . exon 499032 499207 . - . ID=Phyra73098.1;Parent=Phyra73098;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . repeat_region 504746 504769 . ? . description=dust scaffold_2 ensembl protein_coding_gene 500507 501322 . - . ID=Phyra73099;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000164;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 500507 501322 . - . ID=Phyra73099;Parent=Phyra73099;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 500507 501214 . - 0 ID=Phyra73099;Parent=Phyra73099;rank=2 scaffold_2 . exon 500507 501214 . - . ID=Phyra73099.2;Parent=Phyra73099;constitutive=1;rank=2 scaffold_2 . CDS 501293 501322 . - 0 ID=Phyra73099;Parent=Phyra73099;rank=1 scaffold_2 . exon 501293 501322 . - . ID=Phyra73099.1;Parent=Phyra73099;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 504969 506653 . - . ID=Phyra73102;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000167;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 504969 506653 . - . ID=Phyra73102;Parent=Phyra73102;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 504969 505483 . - 0 ID=Phyra73102;Parent=Phyra73102;rank=6 scaffold_2 . exon 504969 505483 . - . ID=Phyra73102.6;Parent=Phyra73102;constitutive=1;ensembl_phase=1;rank=6 scaffold_2 . CDS 505542 505702 . - 0 ID=Phyra73102;Parent=Phyra73102;rank=5 scaffold_2 . exon 505542 505702 . - . ID=Phyra73102.5;Parent=Phyra73102;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 505768 506149 . - 0 ID=Phyra73102;Parent=Phyra73102;rank=4 scaffold_2 . exon 505768 506149 . - . ID=Phyra73102.4;Parent=Phyra73102;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_2 . CDS 506215 506377 . - 0 ID=Phyra73102;Parent=Phyra73102;rank=3 scaffold_2 . exon 506215 506377 . - . ID=Phyra73102.3;Parent=Phyra73102;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 506437 506517 . - 0 ID=Phyra73102;Parent=Phyra73102;rank=2 scaffold_2 . exon 506437 506517 . - . ID=Phyra73102.2;Parent=Phyra73102;constitutive=1;rank=2 scaffold_2 . CDS 506585 506653 . - 0 ID=Phyra73102;Parent=Phyra73102;rank=1 scaffold_2 . exon 506585 506653 . - . ID=Phyra73102.1;Parent=Phyra73102;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 506848 508662 . + . ID=Phyra73103;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000168;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 506848 508662 . + . ID=Phyra73103;Parent=Phyra73103;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 506848 508167 . + 0 ID=Phyra73103;Parent=Phyra73103;rank=1 scaffold_2 . exon 506848 508167 . + . ID=Phyra73103.1;Parent=Phyra73103;constitutive=1;rank=1 scaffold_2 . CDS 508372 508662 . + 0 ID=Phyra73103;Parent=Phyra73103;rank=2 scaffold_2 . exon 508372 508662 . + . ID=Phyra73103.2;Parent=Phyra73103;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 508878 510551 . - . ID=Phyra73104;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000169;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 508878 510551 . - . ID=Phyra73104;Parent=Phyra73104;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 508878 510551 . - 0 ID=Phyra73104;Parent=Phyra73104;rank=1 scaffold_2 . exon 508878 510551 . - . ID=Phyra73104.1;Parent=Phyra73104;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 502289 504899 . + . ID=Phyra93486;biotype=protein_coding;external_name=C_scaffold_2000088;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 502289 504899 . + . ID=Phyra93486;Parent=Phyra93486;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 502289 502495 . + 0 ID=Phyra93486;Parent=Phyra93486;rank=1 scaffold_2 . exon 502289 502495 . + . ID=Phyra93486.1;Parent=Phyra93486;constitutive=1;rank=1 scaffold_2 . CDS 502570 502640 . + 0 ID=Phyra93486;Parent=Phyra93486;rank=2 scaffold_2 . exon 502570 502640 . + . ID=Phyra93486.2;Parent=Phyra93486;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 502702 502774 . + 0 ID=Phyra93486;Parent=Phyra93486;rank=3 scaffold_2 . exon 502702 502774 . + . ID=Phyra93486.3;Parent=Phyra93486;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 502850 502944 . + 0 ID=Phyra93486;Parent=Phyra93486;rank=4 scaffold_2 . exon 502850 502944 . + . ID=Phyra93486.4;Parent=Phyra93486;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . CDS 503028 503163 . + 0 ID=Phyra93486;Parent=Phyra93486;rank=5 scaffold_2 . exon 503028 503163 . + . ID=Phyra93486.5;Parent=Phyra93486;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 503243 503350 . + 0 ID=Phyra93486;Parent=Phyra93486;rank=6 scaffold_2 . exon 503243 503350 . + . ID=Phyra93486.6;Parent=Phyra93486;constitutive=1;rank=6 scaffold_2 . CDS 504310 504416 . + 0 ID=Phyra93486;Parent=Phyra93486;rank=7 scaffold_2 . exon 504310 504416 . + . ID=Phyra93486.7;Parent=Phyra93486;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_2 . CDS 504488 504899 . + 0 ID=Phyra93486;Parent=Phyra93486;rank=8 scaffold_2 . exon 504488 504899 . + . ID=Phyra93486.8;Parent=Phyra93486;constitutive=1;ensembl_phase=2;rank=8 scaffold_2 . biological_region 516021 516024 0.999 + . logic_name=eponine scaffold_2 . biological_region 517018 517020 0.999 - . logic_name=eponine scaffold_2 . biological_region 517073 517076 0.999 + . logic_name=eponine scaffold_2 . biological_region 518964 518966 0.999 - . logic_name=eponine scaffold_2 . biological_region 519022 519022 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 511060 512580 . + . ID=Phyra73105;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000170;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 511060 512580 . + . ID=Phyra73105;Parent=Phyra73105;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 511060 511380 . + 0 ID=Phyra73105;Parent=Phyra73105;rank=1 scaffold_2 . exon 511060 511380 . + . ID=Phyra73105.1;Parent=Phyra73105;constitutive=1;rank=1 scaffold_2 . CDS 511444 511528 . + 0 ID=Phyra73105;Parent=Phyra73105;rank=2 scaffold_2 . exon 511444 511528 . + . ID=Phyra73105.2;Parent=Phyra73105;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 511628 512580 . + 0 ID=Phyra73105;Parent=Phyra73105;rank=3 scaffold_2 . exon 511628 512580 . + . ID=Phyra73105.3;Parent=Phyra73105;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 ensembl protein_coding_gene 513174 515114 . - . ID=Phyra73106;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000171;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 513174 515114 . - . ID=Phyra73106;Parent=Phyra73106;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 513174 513207 . - 0 ID=Phyra73106;Parent=Phyra73106;rank=4 scaffold_2 . exon 513174 513207 . - . ID=Phyra73106.4;Parent=Phyra73106;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 513318 513414 . - 0 ID=Phyra73106;Parent=Phyra73106;rank=3 scaffold_2 . exon 513318 513414 . - . ID=Phyra73106.3;Parent=Phyra73106;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_2 . CDS 513496 513658 . - 0 ID=Phyra73106;Parent=Phyra73106;rank=2 scaffold_2 . exon 513496 513658 . - . ID=Phyra73106.2;Parent=Phyra73106;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 513735 515114 . - 0 ID=Phyra73106;Parent=Phyra73106;rank=1 scaffold_2 . exon 513735 515114 . - . ID=Phyra73106.1;Parent=Phyra73106;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 515857 517139 . - . ID=Phyra73107;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000172;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 515857 517139 . - . ID=Phyra73107;Parent=Phyra73107;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 515857 516591 . - 0 ID=Phyra73107;Parent=Phyra73107;rank=3 scaffold_2 . exon 515857 516591 . - . ID=Phyra73107.3;Parent=Phyra73107;constitutive=1;rank=3 scaffold_2 . CDS 516690 516800 . - 0 ID=Phyra73107;Parent=Phyra73107;rank=2 scaffold_2 . exon 516690 516800 . - . ID=Phyra73107.2;Parent=Phyra73107;constitutive=1;rank=2 scaffold_2 . CDS 516873 517139 . - 0 ID=Phyra73107;Parent=Phyra73107;rank=1 scaffold_2 . exon 516873 517139 . - . ID=Phyra73107.1;Parent=Phyra73107;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 517806 519155 . - . ID=Phyra73108;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000173;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 517806 519155 . - . ID=Phyra73108;Parent=Phyra73108;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 517806 518540 . - 0 ID=Phyra73108;Parent=Phyra73108;rank=3 scaffold_2 . exon 517806 518540 . - . ID=Phyra73108.3;Parent=Phyra73108;constitutive=1;rank=3 scaffold_2 . CDS 518646 518756 . - 0 ID=Phyra73108;Parent=Phyra73108;rank=2 scaffold_2 . exon 518646 518756 . - . ID=Phyra73108.2;Parent=Phyra73108;constitutive=1;rank=2 scaffold_2 . CDS 518844 519155 . - 0 ID=Phyra73108;Parent=Phyra73108;rank=1 scaffold_2 . exon 518844 519155 . - . ID=Phyra73108.1;Parent=Phyra73108;constitutive=1;rank=1 scaffold_2 . repeat_region 520836 520857 . ? . description=dust scaffold_2 . repeat_region 524500 524526 . ? . description=trf scaffold_2 . repeat_region 524500 524526 . ? . description=dust scaffold_2 ensembl protein_coding_gene 520864 523253 . - . ID=Phyra71076;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000017;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 520864 523253 . - . ID=Phyra71076;Parent=Phyra71076;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 520864 520991 . - 0 ID=Phyra71076;Parent=Phyra71076;rank=2 scaffold_2 . exon 520864 520991 . - . ID=Phyra71076.2;Parent=Phyra71076;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 521027 523253 . - 0 ID=Phyra71076;Parent=Phyra71076;rank=1 scaffold_2 . exon 521027 523253 . - . ID=Phyra71076.1;Parent=Phyra71076;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 525735 526517 . + . ID=Phyra73110;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000175;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 525735 526517 . + . ID=Phyra73110;Parent=Phyra73110;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 525735 526517 . + 0 ID=Phyra73110;Parent=Phyra73110;rank=1 scaffold_2 . exon 525735 526517 . + . ID=Phyra73110.1;Parent=Phyra73110;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 529038 529831 . + . ID=Phyra73112;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000177;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 529038 529831 . + . ID=Phyra73112;Parent=Phyra73112;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 529038 529677 . + 0 ID=Phyra73112;Parent=Phyra73112;rank=1 scaffold_2 . exon 529038 529677 . + . ID=Phyra73112.1;Parent=Phyra73112;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 529794 529831 . + 0 ID=Phyra73112;Parent=Phyra73112;rank=2 scaffold_2 ensembl protein_coding_gene 526972 528450 . - . ID=Phyra93489;biotype=protein_coding;external_name=C_scaffold_2000091;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 526972 528450 . - . ID=Phyra93489;Parent=Phyra93489;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 526972 527405 . - 0 ID=Phyra93489;Parent=Phyra93489;rank=3 scaffold_2 . exon 526972 527405 . - . ID=Phyra93489.3;Parent=Phyra93489;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 527595 527911 . - 0 ID=Phyra93489;Parent=Phyra93489;rank=2 scaffold_2 . exon 527595 527911 . - . ID=Phyra93489.2;Parent=Phyra93489;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 527981 528450 . - 0 ID=Phyra93489;Parent=Phyra93489;rank=1 scaffold_2 . exon 527981 528450 . - . ID=Phyra93489.1;Parent=Phyra93489;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . biological_region 532116 532123 0.999 - . logic_name=eponine scaffold_2 . exon 529794 529831 . + . ID=Phyra73112.2;Parent=Phyra73112;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 ensembl protein_coding_gene 530134 531270 . - . ID=Phyra73113;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000178;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 530134 531270 . - . ID=Phyra73113;Parent=Phyra73113;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 530134 531270 . - 0 ID=Phyra73113;Parent=Phyra73113;rank=1 scaffold_2 . exon 530134 531270 . - . ID=Phyra73113.1;Parent=Phyra73113;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 531938 533259 . + . ID=Phyra73114;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000179;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 531938 533259 . + . ID=Phyra73114;Parent=Phyra73114;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 531938 532128 . + 0 ID=Phyra73114;Parent=Phyra73114;rank=1 scaffold_2 . exon 531938 532128 . + . ID=Phyra73114.1;Parent=Phyra73114;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 532197 532299 . + 0 ID=Phyra73114;Parent=Phyra73114;rank=2 scaffold_2 . exon 532197 532299 . + . ID=Phyra73114.2;Parent=Phyra73114;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 532376 532506 . + 0 ID=Phyra73114;Parent=Phyra73114;rank=3 scaffold_2 . exon 532376 532506 . + . ID=Phyra73114.3;Parent=Phyra73114;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 532584 533259 . + 0 ID=Phyra73114;Parent=Phyra73114;rank=4 scaffold_2 . exon 532584 533259 . + . ID=Phyra73114.4;Parent=Phyra73114;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 ensembl protein_coding_gene 540453 543428 . + . ID=Phyra93493;biotype=protein_coding;external_name=C_scaffold_2000095;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 540453 543428 . + . ID=Phyra93493;Parent=Phyra93493;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 540453 540703 . + 0 ID=Phyra93493;Parent=Phyra93493;rank=1 scaffold_2 . exon 540453 540703 . + . ID=Phyra93493.1;Parent=Phyra93493;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 540809 541022 . + 0 ID=Phyra93493;Parent=Phyra93493;rank=2 scaffold_2 . exon 540809 541022 . + . ID=Phyra93493.2;Parent=Phyra93493;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 541150 541187 . + 0 ID=Phyra93493;Parent=Phyra93493;rank=3 scaffold_2 . exon 541150 541187 . + . ID=Phyra93493.3;Parent=Phyra93493;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 541325 541587 . + 0 ID=Phyra93493;Parent=Phyra93493;rank=4 scaffold_2 . exon 541325 541587 . + . ID=Phyra93493.4;Parent=Phyra93493;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 541690 542712 . + 0 ID=Phyra93493;Parent=Phyra93493;rank=5 scaffold_2 . exon 541690 542712 . + . ID=Phyra93493.5;Parent=Phyra93493;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 542758 542832 . + 0 ID=Phyra93493;Parent=Phyra93493;rank=6 scaffold_2 . exon 542758 542832 . + . ID=Phyra93493.6;Parent=Phyra93493;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_2 . CDS 543316 543428 . + 0 ID=Phyra93493;Parent=Phyra93493;rank=7 scaffold_2 . exon 543316 543428 . + . ID=Phyra93493.7;Parent=Phyra93493;constitutive=1;ensembl_phase=1;rank=7 scaffold_2 ensembl protein_coding_gene 546956 548801 . - . ID=Phyra93494;biotype=protein_coding;external_name=C_scaffold_2000096;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 546956 548801 . - . ID=Phyra93494;Parent=Phyra93494;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 546956 547369 . - 0 ID=Phyra93494;Parent=Phyra93494;rank=4 scaffold_2 . exon 546956 547369 . - . ID=Phyra93494.4;Parent=Phyra93494;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 547487 547779 . - 0 ID=Phyra93494;Parent=Phyra93494;rank=3 scaffold_2 . exon 547487 547779 . - . ID=Phyra93494.3;Parent=Phyra93494;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 548062 548197 . - 0 ID=Phyra93494;Parent=Phyra93494;rank=2 scaffold_2 . exon 548062 548197 . - . ID=Phyra93494.2;Parent=Phyra93494;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 548549 548801 . - 0 ID=Phyra93494;Parent=Phyra93494;rank=1 scaffold_2 . exon 548549 548801 . - . ID=Phyra93494.1;Parent=Phyra93494;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 548943 552135 . - . ID=Phyra93495;biotype=protein_coding;external_name=C_scaffold_2000097;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 548943 552135 . - . ID=Phyra93495;Parent=Phyra93495;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 548943 549422 . - 0 ID=Phyra93495;Parent=Phyra93495;rank=10 scaffold_2 . exon 548943 549422 . - . ID=Phyra93495.10;Parent=Phyra93495;constitutive=1;rank=10 scaffold_2 . CDS 549501 549597 . - 0 ID=Phyra93495;Parent=Phyra93495;rank=9 scaffold_2 . exon 549501 549597 . - . ID=Phyra93495.9;Parent=Phyra93495;constitutive=1;ensembl_phase=2;rank=9 scaffold_2 . CDS 549660 549899 . - 0 ID=Phyra93495;Parent=Phyra93495;rank=8 scaffold_2 . CDS 549974 550041 . - 0 ID=Phyra93495;Parent=Phyra93495;rank=7 scaffold_2 . CDS 550114 550297 . - 0 ID=Phyra93495;Parent=Phyra93495;rank=6 scaffold_2 . CDS 550386 550489 . - 0 ID=Phyra93495;Parent=Phyra93495;rank=5 scaffold_2 . CDS 550553 550717 . - 0 ID=Phyra93495;Parent=Phyra93495;rank=4 scaffold_2 . CDS 551018 551206 . - 0 ID=Phyra93495;Parent=Phyra93495;rank=3 scaffold_2 . CDS 551237 551950 . - 0 ID=Phyra93495;Parent=Phyra93495;rank=2 scaffold_2 . CDS 552070 552135 . - 0 ID=Phyra93495;Parent=Phyra93495;rank=1 scaffold_2 . biological_region 550517 550520 0.999 - . logic_name=eponine scaffold_2 . repeat_region 553892 553900 . ? . description=dust scaffold_2 . biological_region 555856 555861 0.999 + . logic_name=eponine scaffold_2 . biological_region 555953 555953 0.999 + . logic_name=eponine scaffold_2 . biological_region 557143 557145 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 552756 553741 . + . ID=Phyra73118;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000183;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 552756 553741 . + . ID=Phyra73118;Parent=Phyra73118;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 552756 553405 . + 0 ID=Phyra73118;Parent=Phyra73118;rank=1 scaffold_2 . exon 552756 553405 . + . ID=Phyra73118.1;Parent=Phyra73118;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 553482 553554 . + 0 ID=Phyra73118;Parent=Phyra73118;rank=2 scaffold_2 . exon 553482 553554 . + . ID=Phyra73118.2;Parent=Phyra73118;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 553628 553741 . + 0 ID=Phyra73118;Parent=Phyra73118;rank=3 scaffold_2 . exon 553628 553741 . + . ID=Phyra73118.3;Parent=Phyra73118;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 554976 556020 . - . ID=Phyra73119;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000184;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 554976 556020 . - . ID=Phyra73119;Parent=Phyra73119;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 554976 555023 . - 0 ID=Phyra73119;Parent=Phyra73119;rank=6 scaffold_2 . exon 554976 555023 . - . ID=Phyra73119.6;Parent=Phyra73119;constitutive=1;rank=6 scaffold_2 . CDS 555183 555464 . - 0 ID=Phyra73119;Parent=Phyra73119;rank=5 scaffold_2 . exon 555183 555464 . - . ID=Phyra73119.5;Parent=Phyra73119;constitutive=1;rank=5 scaffold_2 . CDS 555494 555526 . - 0 ID=Phyra73119;Parent=Phyra73119;rank=4 scaffold_2 . exon 555494 555526 . - . ID=Phyra73119.4;Parent=Phyra73119;constitutive=1;rank=4 scaffold_2 . CDS 555549 555627 . - 0 ID=Phyra73119;Parent=Phyra73119;rank=3 scaffold_2 . exon 555549 555627 . - . ID=Phyra73119.3;Parent=Phyra73119;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 555722 555748 . - 0 ID=Phyra73119;Parent=Phyra73119;rank=2 scaffold_2 . exon 555722 555748 . - . ID=Phyra73119.2;Parent=Phyra73119;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 555857 556020 . - 0 ID=Phyra73119;Parent=Phyra73119;rank=1 scaffold_2 . exon 555857 556020 . - . ID=Phyra73119.1;Parent=Phyra73119;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 556131 556661 . + . ID=Phyra73120;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000185;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 556131 556661 . + . ID=Phyra73120;Parent=Phyra73120;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 556131 556180 . + 0 ID=Phyra73120;Parent=Phyra73120;rank=1 scaffold_2 . exon 556131 556180 . + . ID=Phyra73120.1;Parent=Phyra73120;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 556256 556389 . + 0 ID=Phyra73120;Parent=Phyra73120;rank=2 scaffold_2 . exon 556256 556389 . + . ID=Phyra73120.2;Parent=Phyra73120;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 556434 556467 . + 0 ID=Phyra73120;Parent=Phyra73120;rank=3 scaffold_2 . exon 556434 556467 . + . ID=Phyra73120.3;Parent=Phyra73120;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_2 . CDS 556535 556661 . + 0 ID=Phyra73120;Parent=Phyra73120;rank=4 scaffold_2 . exon 556535 556661 . + . ID=Phyra73120.4;Parent=Phyra73120;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 ensembl protein_coding_gene 556990 557850 . - . ID=Phyra73121;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000186;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 556990 557850 . - . ID=Phyra73121;Parent=Phyra73121;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 556990 557850 . - 0 ID=Phyra73121;Parent=Phyra73121;rank=1 scaffold_2 . exon 556990 557850 . - . ID=Phyra73121.1;Parent=Phyra73121;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 558537 560334 . + . ID=Phyra73122;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000187;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 558537 560334 . + . ID=Phyra73122;Parent=Phyra73122;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 558537 559520 . + 0 ID=Phyra73122;Parent=Phyra73122;rank=1 scaffold_2 . exon 558537 559520 . + . ID=Phyra73122.1;Parent=Phyra73122;constitutive=1;rank=1 scaffold_2 . CDS 559872 560162 . + 0 ID=Phyra73122;Parent=Phyra73122;rank=2 scaffold_2 . CDS 560317 560334 . + 0 ID=Phyra73122;Parent=Phyra73122;rank=3 scaffold_2 . exon 549660 549899 . - . ID=Phyra93495.8;Parent=Phyra93495;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_2 . exon 549974 550041 . - . ID=Phyra93495.7;Parent=Phyra93495;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_2 . exon 550114 550297 . - . ID=Phyra93495.6;Parent=Phyra93495;constitutive=1;ensembl_phase=2;rank=6 scaffold_2 . exon 550386 550489 . - . ID=Phyra93495.5;Parent=Phyra93495;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_2 . exon 550553 550717 . - . ID=Phyra93495.4;Parent=Phyra93495;constitutive=1;rank=4 scaffold_2 . exon 551018 551206 . - . ID=Phyra93495.3;Parent=Phyra93495;constitutive=1;rank=3 scaffold_2 . exon 551237 551950 . - . ID=Phyra93495.2;Parent=Phyra93495;constitutive=1;rank=2 scaffold_2 . exon 552070 552135 . - . ID=Phyra93495.1;Parent=Phyra93495;constitutive=1;rank=1 scaffold_2 . exon 559872 560162 . + . ID=Phyra73122.2;Parent=Phyra73122;constitutive=1;rank=2 scaffold_2 . exon 560317 560334 . + . ID=Phyra73122.3;Parent=Phyra73122;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 561839 562953 . - . ID=Phyra73124;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000189;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 561839 562953 . - . ID=Phyra73124;Parent=Phyra73124;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 561839 561856 . - 0 ID=Phyra73124;Parent=Phyra73124;rank=4 scaffold_2 . exon 561839 561856 . - . ID=Phyra73124.4;Parent=Phyra73124;constitutive=1;rank=4 scaffold_2 . CDS 561944 562267 . - 0 ID=Phyra73124;Parent=Phyra73124;rank=3 scaffold_2 . exon 561944 562267 . - . ID=Phyra73124.3;Parent=Phyra73124;constitutive=1;rank=3 scaffold_2 . CDS 562344 562491 . - 0 ID=Phyra73124;Parent=Phyra73124;rank=2 scaffold_2 . exon 562344 562491 . - . ID=Phyra73124.2;Parent=Phyra73124;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 562568 562953 . - 0 ID=Phyra73124;Parent=Phyra73124;rank=1 scaffold_2 . exon 562568 562953 . - . ID=Phyra73124.1;Parent=Phyra73124;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 560696 561559 . + . ID=Phyra93496;biotype=protein_coding;external_name=C_scaffold_2000098;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 560696 561559 . + . ID=Phyra93496;Parent=Phyra93496;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 560696 561559 . + 0 ID=Phyra93496;Parent=Phyra93496;rank=1 scaffold_2 . exon 560696 561559 . + . ID=Phyra93496.1;Parent=Phyra93496;constitutive=1;rank=1 scaffold_2 . repeat_region 577269 577277 . ? . description=dust scaffold_2 . repeat_region 578991 579018 . ? . description=trf scaffold_2 ensembl protein_coding_gene 576337 577188 . + . ID=Phyra43874;biotype=protein_coding;external_name=gwEuk.2.125.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 576337 577188 . + . ID=Phyra43874;Parent=Phyra43874;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 576337 576581 . + 0 ID=Phyra43874;Parent=Phyra43874;rank=1 scaffold_2 . exon 576337 576581 . + . ID=Phyra43874.1;Parent=Phyra43874;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 576654 576765 . + 0 ID=Phyra43874;Parent=Phyra43874;rank=2 scaffold_2 . exon 576654 576765 . + . ID=Phyra43874.2;Parent=Phyra43874;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 576829 577188 . + 0 ID=Phyra43874;Parent=Phyra43874;rank=3 scaffold_2 . exon 576829 577188 . + . ID=Phyra43874.3;Parent=Phyra43874;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 574497 576065 . - . ID=Phyra71077;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000018;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 574497 576065 . - . ID=Phyra71077;Parent=Phyra71077;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 574497 574539 . - 0 ID=Phyra71077;Parent=Phyra71077;rank=9 scaffold_2 . exon 574497 574539 . - . ID=Phyra71077.9;Parent=Phyra71077;constitutive=1;ensembl_phase=2;rank=9 scaffold_2 . CDS 574592 574594 . - 0 ID=Phyra71077;Parent=Phyra71077;rank=8 scaffold_2 . exon 574592 574594 . - . ID=Phyra71077.8;Parent=Phyra71077;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_2 . CDS 574615 574789 . - 0 ID=Phyra71077;Parent=Phyra71077;rank=7 scaffold_2 . exon 574615 574789 . - . ID=Phyra71077.7;Parent=Phyra71077;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_2 . CDS 574890 574959 . - 0 ID=Phyra71077;Parent=Phyra71077;rank=6 scaffold_2 . exon 574890 574959 . - . ID=Phyra71077.6;Parent=Phyra71077;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_2 . CDS 575025 575100 . - 0 ID=Phyra71077;Parent=Phyra71077;rank=5 scaffold_2 . exon 575025 575100 . - . ID=Phyra71077.5;Parent=Phyra71077;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 575179 575268 . - 0 ID=Phyra71077;Parent=Phyra71077;rank=4 scaffold_2 . exon 575179 575268 . - . ID=Phyra71077.4;Parent=Phyra71077;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_2 . CDS 575355 575477 . - 0 ID=Phyra71077;Parent=Phyra71077;rank=3 scaffold_2 . exon 575355 575477 . - . ID=Phyra71077.3;Parent=Phyra71077;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_2 . CDS 575549 575645 . - 0 ID=Phyra71077;Parent=Phyra71077;rank=2 scaffold_2 . exon 575549 575645 . - . ID=Phyra71077.2;Parent=Phyra71077;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 575726 576065 . - 0 ID=Phyra71077;Parent=Phyra71077;rank=1 scaffold_2 . exon 575726 576065 . - . ID=Phyra71077.1;Parent=Phyra71077;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 578621 579262 . + . ID=Phyra71079;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000020;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 578621 579262 . + . ID=Phyra71079;Parent=Phyra71079;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 578621 579262 . + 0 ID=Phyra71079;Parent=Phyra71079;rank=1 scaffold_2 . exon 578621 579262 . + . ID=Phyra71079.1;Parent=Phyra71079;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 577325 578379 . - . ID=Phyra73127;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000192;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 577325 578379 . - . ID=Phyra73127;Parent=Phyra73127;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 577325 577545 . - 0 ID=Phyra73127;Parent=Phyra73127;rank=6 scaffold_2 . exon 577325 577545 . - . ID=Phyra73127.6;Parent=Phyra73127;constitutive=1;ensembl_phase=1;rank=6 scaffold_2 . CDS 577626 577690 . - 0 ID=Phyra73127;Parent=Phyra73127;rank=5 scaffold_2 . exon 577626 577690 . - . ID=Phyra73127.5;Parent=Phyra73127;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 577773 577816 . - 0 ID=Phyra73127;Parent=Phyra73127;rank=4 scaffold_2 . exon 577773 577816 . - . ID=Phyra73127.4;Parent=Phyra73127;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . CDS 577893 578063 . - 0 ID=Phyra73127;Parent=Phyra73127;rank=3 scaffold_2 . exon 577893 578063 . - . ID=Phyra73127.3;Parent=Phyra73127;constitutive=1;rank=3 scaffold_2 . CDS 578147 578205 . - 0 ID=Phyra73127;Parent=Phyra73127;rank=2 scaffold_2 . exon 578147 578205 . - . ID=Phyra73127.2;Parent=Phyra73127;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 578280 578379 . - 0 ID=Phyra73127;Parent=Phyra73127;rank=1 scaffold_2 . exon 578280 578379 . - . ID=Phyra73127.1;Parent=Phyra73127;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 579488 580703 . - . ID=Phyra73129;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000194;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 579488 580703 . - . ID=Phyra73129;Parent=Phyra73129;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 579488 579919 . - 0 ID=Phyra73129;Parent=Phyra73129;rank=4 scaffold_2 . exon 579488 579919 . - . ID=Phyra73129.4;Parent=Phyra73129;constitutive=1;rank=4 scaffold_2 . CDS 580015 580116 . - 0 ID=Phyra73129;Parent=Phyra73129;rank=3 scaffold_2 . CDS 580183 580428 . - 0 ID=Phyra73129;Parent=Phyra73129;rank=2 scaffold_2 . CDS 580512 580703 . - 0 ID=Phyra73129;Parent=Phyra73129;rank=1 scaffold_2 . biological_region 580522 580523 0.999 + . logic_name=eponine scaffold_2 . biological_region 580830 580831 0.999 - . logic_name=eponine scaffold_2 . biological_region 583223 583224 0.999 - . logic_name=eponine scaffold_2 . biological_region 584433 584438 0.999 + . logic_name=eponine scaffold_2 . biological_region 588322 588322 0.999 - . logic_name=eponine scaffold_2 . biological_region 588969 588970 0.999 + . logic_name=eponine scaffold_2 . biological_region 589227 589227 0.999 - . logic_name=eponine scaffold_2 . exon 580015 580116 . - . ID=Phyra73129.3;Parent=Phyra73129;constitutive=1;rank=3 scaffold_2 . exon 580183 580428 . - . ID=Phyra73129.2;Parent=Phyra73129;constitutive=1;rank=2 scaffold_2 . exon 580512 580703 . - . ID=Phyra73129.1;Parent=Phyra73129;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 582937 583782 . - . ID=Phyra73130;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000195;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 582937 583782 . - . ID=Phyra73130;Parent=Phyra73130;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 582937 583782 . - 0 ID=Phyra73130;Parent=Phyra73130;rank=1 scaffold_2 . exon 582937 583782 . - . ID=Phyra73130.1;Parent=Phyra73130;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 583993 584892 . - . ID=Phyra73131;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000196;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 583993 584892 . - . ID=Phyra73131;Parent=Phyra73131;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 583993 584892 . - 0 ID=Phyra73131;Parent=Phyra73131;rank=1 scaffold_2 . exon 583993 584892 . - . ID=Phyra73131.1;Parent=Phyra73131;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 588946 591126 . + . ID=Phyra73132;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000197;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 588946 591126 . + . ID=Phyra73132;Parent=Phyra73132;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 588946 589040 . + 0 ID=Phyra73132;Parent=Phyra73132;rank=1 scaffold_2 . exon 588946 589040 . + . ID=Phyra73132.1;Parent=Phyra73132;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 589134 591126 . + 0 ID=Phyra73132;Parent=Phyra73132;rank=2 scaffold_2 . exon 589134 591126 . + . ID=Phyra73132.2;Parent=Phyra73132;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . repeat_region 596873 596880 . ? . description=dust scaffold_2 . repeat_region 598206 598255 . ? . description=dust scaffold_2 ensembl protein_coding_gene 593451 595880 . + . ID=Phyra73133;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000198;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 593451 595880 . + . ID=Phyra73133;Parent=Phyra73133;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 593451 594341 . + 0 ID=Phyra73133;Parent=Phyra73133;rank=1 scaffold_2 . exon 593451 594341 . + . ID=Phyra73133.1;Parent=Phyra73133;constitutive=1;rank=1 scaffold_2 . CDS 594408 594473 . + 0 ID=Phyra73133;Parent=Phyra73133;rank=2 scaffold_2 . exon 594408 594473 . + . ID=Phyra73133.2;Parent=Phyra73133;constitutive=1;rank=2 scaffold_2 . CDS 594696 594731 . + 0 ID=Phyra73133;Parent=Phyra73133;rank=3 scaffold_2 . exon 594696 594731 . + . ID=Phyra73133.3;Parent=Phyra73133;constitutive=1;rank=3 scaffold_2 . CDS 594796 594895 . + 0 ID=Phyra73133;Parent=Phyra73133;rank=4 scaffold_2 . exon 594796 594895 . + . ID=Phyra73133.4;Parent=Phyra73133;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_2 . CDS 594967 595124 . + 0 ID=Phyra73133;Parent=Phyra73133;rank=5 scaffold_2 . exon 594967 595124 . + . ID=Phyra73133.5;Parent=Phyra73133;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 595197 595303 . + 0 ID=Phyra73133;Parent=Phyra73133;rank=6 scaffold_2 . exon 595197 595303 . + . ID=Phyra73133.6;Parent=Phyra73133;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_2 . CDS 595374 595436 . + 0 ID=Phyra73133;Parent=Phyra73133;rank=7 scaffold_2 . exon 595374 595436 . + . ID=Phyra73133.7;Parent=Phyra73133;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_2 . CDS 595515 595644 . + 0 ID=Phyra73133;Parent=Phyra73133;rank=8 scaffold_2 . exon 595515 595644 . + . ID=Phyra73133.8;Parent=Phyra73133;constitutive=1;ensembl_phase=2;rank=8 scaffold_2 . CDS 595704 595880 . + 0 ID=Phyra73133;Parent=Phyra73133;rank=9 scaffold_2 . exon 595704 595880 . + . ID=Phyra73133.9;Parent=Phyra73133;constitutive=1;rank=9 scaffold_2 ensembl protein_coding_gene 596906 597280 . + . ID=Phyra73134;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000199;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 596906 597280 . + . ID=Phyra73134;Parent=Phyra73134;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 596906 597280 . + 0 ID=Phyra73134;Parent=Phyra73134;rank=1 scaffold_2 . exon 596906 597280 . + . ID=Phyra73134.1;Parent=Phyra73134;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 599536 600567 . - . ID=Phyra73135;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000200;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 599536 600567 . - . ID=Phyra73135;Parent=Phyra73135;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 599536 600567 . - 0 ID=Phyra73135;Parent=Phyra73135;rank=1 scaffold_2 . exon 599536 600567 . - . ID=Phyra73135.1;Parent=Phyra73135;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 591763 593004 . - . ID=Phyra93499;biotype=protein_coding;external_name=C_scaffold_2000101;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 591763 593004 . - . ID=Phyra93499;Parent=Phyra93499;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 591763 591777 . - 0 ID=Phyra93499;Parent=Phyra93499;rank=5 scaffold_2 . exon 591763 591777 . - . ID=Phyra93499.5;Parent=Phyra93499;constitutive=1;rank=5 scaffold_2 . CDS 591924 592086 . - 0 ID=Phyra93499;Parent=Phyra93499;rank=4 scaffold_2 . exon 591924 592086 . - . ID=Phyra93499.4;Parent=Phyra93499;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 592167 592267 . - 0 ID=Phyra93499;Parent=Phyra93499;rank=3 scaffold_2 . exon 592167 592267 . - . ID=Phyra93499.3;Parent=Phyra93499;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 592645 592842 . - 0 ID=Phyra93499;Parent=Phyra93499;rank=2 scaffold_2 . exon 592645 592842 . - . ID=Phyra93499.2;Parent=Phyra93499;constitutive=1;rank=2 scaffold_2 . CDS 592912 593004 . - 0 ID=Phyra93499;Parent=Phyra93499;rank=1 scaffold_2 . exon 592912 593004 . - . ID=Phyra93499.1;Parent=Phyra93499;constitutive=1;rank=1 scaffold_2 . biological_region 605560 605563 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 603091 603399 . - . ID=Phyra73136;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000201;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 603091 603399 . - . ID=Phyra73136;Parent=Phyra73136;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 603091 603399 . - 0 ID=Phyra73136;Parent=Phyra73136;rank=1 scaffold_2 . exon 603091 603399 . - . ID=Phyra73136.1;Parent=Phyra73136;constitutive=1;rank=1 scaffold_2 . repeat_region 612765 612775 . ? . description=dust scaffold_2 ensembl protein_coding_gene 609901 610632 . - . ID=Phyra73137;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000202;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 609901 610632 . - . ID=Phyra73137;Parent=Phyra73137;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 609901 610632 . - 0 ID=Phyra73137;Parent=Phyra73137;rank=1 scaffold_2 . exon 609901 610632 . - . ID=Phyra73137.1;Parent=Phyra73137;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 611737 612732 . + . ID=Phyra73138;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000203;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 611737 612732 . + . ID=Phyra73138;Parent=Phyra73138;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 611737 612096 . + 0 ID=Phyra73138;Parent=Phyra73138;rank=1 scaffold_2 . exon 611737 612096 . + . ID=Phyra73138.1;Parent=Phyra73138;constitutive=1;rank=1 scaffold_2 . CDS 612168 612248 . + 0 ID=Phyra73138;Parent=Phyra73138;rank=2 scaffold_2 . exon 612168 612248 . + . ID=Phyra73138.2;Parent=Phyra73138;constitutive=1;rank=2 scaffold_2 . CDS 612319 612564 . + 0 ID=Phyra73138;Parent=Phyra73138;rank=3 scaffold_2 . exon 612319 612564 . + . ID=Phyra73138.3;Parent=Phyra73138;constitutive=1;rank=3 scaffold_2 . CDS 612628 612732 . + 0 ID=Phyra73138;Parent=Phyra73138;rank=4 scaffold_2 . exon 612628 612732 . + . ID=Phyra73138.4;Parent=Phyra73138;constitutive=1;rank=4 scaffold_2 ensembl protein_coding_gene 614720 616303 . + . ID=Phyra73139;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000204;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 614720 616303 . + . ID=Phyra73139;Parent=Phyra73139;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 614720 615408 . + 0 ID=Phyra73139;Parent=Phyra73139;rank=1 scaffold_2 . exon 614720 615408 . + . ID=Phyra73139.1;Parent=Phyra73139;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 615486 615504 . + 0 ID=Phyra73139;Parent=Phyra73139;rank=2 scaffold_2 . exon 615486 615504 . + . ID=Phyra73139.2;Parent=Phyra73139;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 615710 616303 . + 0 ID=Phyra73139;Parent=Phyra73139;rank=3 scaffold_2 . exon 615710 616303 . + . ID=Phyra73139.3;Parent=Phyra73139;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 617165 619228 . - . ID=Phyra73140;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000205;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 617165 619228 . - . ID=Phyra73140;Parent=Phyra73140;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 617165 619228 . - 0 ID=Phyra73140;Parent=Phyra73140;rank=1 scaffold_2 . exon 617165 619228 . - . ID=Phyra73140.1;Parent=Phyra73140;constitutive=1;rank=1 scaffold_2 . biological_region 620800 620802 0.999 + . logic_name=eponine scaffold_2 . biological_region 620869 620873 0.999 - . logic_name=eponine scaffold_2 . biological_region 620879 620883 0.999 - . logic_name=eponine scaffold_2 . biological_region 620902 620907 0.999 - . logic_name=eponine scaffold_2 . biological_region 621505 621509 0.999 + . logic_name=eponine scaffold_2 . biological_region 621514 621519 0.999 - . logic_name=eponine scaffold_2 . biological_region 621521 621526 0.999 + . logic_name=eponine scaffold_2 . biological_region 621571 621574 0.999 - . logic_name=eponine scaffold_2 . biological_region 621645 621649 0.999 - . logic_name=eponine scaffold_2 . biological_region 621701 621704 0.999 - . logic_name=eponine scaffold_2 . biological_region 622060 622065 0.999 - . logic_name=eponine scaffold_2 . biological_region 622085 622087 0.999 + . logic_name=eponine scaffold_2 . biological_region 622114 622116 0.999 + . logic_name=eponine scaffold_2 . biological_region 622176 622180 0.999 + . logic_name=eponine scaffold_2 . biological_region 622249 622256 0.999 - . logic_name=eponine scaffold_2 . biological_region 622287 622291 0.999 - . logic_name=eponine scaffold_2 . biological_region 622342 622346 0.999 + . logic_name=eponine scaffold_2 . biological_region 624265 624267 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 620774 622281 . + . ID=Phyra73141;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000206;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 620774 622281 . + . ID=Phyra73141;Parent=Phyra73141;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 620774 621542 . + 0 ID=Phyra73141;Parent=Phyra73141;rank=1 scaffold_2 . exon 620774 621542 . + . ID=Phyra73141.1;Parent=Phyra73141;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 621734 622281 . + 0 ID=Phyra73141;Parent=Phyra73141;rank=2 scaffold_2 . exon 621734 622281 . + . ID=Phyra73141.2;Parent=Phyra73141;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 ensembl protein_coding_gene 624066 625378 . + . ID=Phyra93500;biotype=protein_coding;external_name=C_scaffold_2000102;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 624066 625378 . + . ID=Phyra93500;Parent=Phyra93500;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 624066 624975 . + 0 ID=Phyra93500;Parent=Phyra93500;rank=1 scaffold_2 . exon 624066 624975 . + . ID=Phyra93500.1;Parent=Phyra93500;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 625132 625264 . + 0 ID=Phyra93500;Parent=Phyra93500;rank=2 scaffold_2 . exon 625132 625264 . + . ID=Phyra93500.2;Parent=Phyra93500;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 625351 625378 . + 0 ID=Phyra93500;Parent=Phyra93500;rank=3 scaffold_2 . exon 625351 625378 . + . ID=Phyra93500.3;Parent=Phyra93500;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . repeat_region 631437 631486 . ? . description=dust scaffold_2 ensembl protein_coding_gene 629670 630879 . + . ID=Phyra43883;biotype=protein_coding;external_name=gwEuk.2.134.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 629670 630879 . + . ID=Phyra43883;Parent=Phyra43883;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 629670 630169 . + 0 ID=Phyra43883;Parent=Phyra43883;rank=1 scaffold_2 . exon 629670 630169 . + . ID=Phyra43883.1;Parent=Phyra43883;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 630239 630566 . + 0 ID=Phyra43883;Parent=Phyra43883;rank=2 scaffold_2 . exon 630239 630566 . + . ID=Phyra43883.2;Parent=Phyra43883;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 630634 630879 . + 0 ID=Phyra43883;Parent=Phyra43883;rank=3 scaffold_2 . exon 630634 630879 . + . ID=Phyra43883.3;Parent=Phyra43883;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 637240 639359 . - . ID=Phyra73144;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000209;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 637240 639359 . - . ID=Phyra73144;Parent=Phyra73144;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 637240 638254 . - 0 ID=Phyra73144;Parent=Phyra73144;rank=2 scaffold_2 . exon 637240 638254 . - . ID=Phyra73144.2;Parent=Phyra73144;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 638407 639359 . - 0 ID=Phyra73144;Parent=Phyra73144;rank=1 scaffold_2 . exon 638407 639359 . - . ID=Phyra73144.1;Parent=Phyra73144;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 635325 637177 . + . ID=Phyra93501;biotype=protein_coding;external_name=C_scaffold_2000103;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 635325 637177 . + . ID=Phyra93501;Parent=Phyra93501;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . exon 635325 635652 . + . ID=Phyra93501.1;Parent=Phyra93501;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 635326 635652 . + 0 ID=Phyra93501;Parent=Phyra93501;rank=1 scaffold_2 . CDS 635720 635932 . + 0 ID=Phyra93501;Parent=Phyra93501;rank=2 scaffold_2 . exon 635720 635932 . + . ID=Phyra93501.2;Parent=Phyra93501;constitutive=1;rank=2 scaffold_2 . CDS 636191 636376 . + 0 ID=Phyra93501;Parent=Phyra93501;rank=3 scaffold_2 . exon 636191 636376 . + . ID=Phyra93501.3;Parent=Phyra93501;constitutive=1;rank=3 scaffold_2 . CDS 636449 637177 . + 0 ID=Phyra93501;Parent=Phyra93501;rank=4 scaffold_2 . exon 636449 637177 . + . ID=Phyra93501.4;Parent=Phyra93501;constitutive=1;rank=4 scaffold_2 . biological_region 639680 639680 0.999 + . logic_name=eponine scaffold_2 . biological_region 640591 640596 0.999 - . logic_name=eponine scaffold_2 . repeat_region 640719 640805 . ? . description=trf scaffold_2 . biological_region 640915 640917 0.999 + . logic_name=eponine scaffold_2 . biological_region 640967 640971 0.999 + . logic_name=eponine scaffold_2 . repeat_region 640970 641066 . ? . description=trf scaffold_2 . biological_region 641004 641008 0.999 + . logic_name=eponine scaffold_2 . biological_region 641065 641069 0.999 - . logic_name=eponine scaffold_2 . biological_region 641100 641103 0.999 - . logic_name=eponine scaffold_2 . biological_region 641115 641120 0.999 - . logic_name=eponine scaffold_2 . biological_region 641118 641124 0.999 + . logic_name=eponine scaffold_2 . biological_region 641145 641149 0.999 - . logic_name=eponine scaffold_2 . repeat_region 643951 643994 . ? . description=trf scaffold_2 . biological_region 645024 645024 0.999 - . logic_name=eponine scaffold_2 . biological_region 646218 646220 0.999 + . logic_name=eponine scaffold_2 . repeat_region 646686 646713 . ? . description=trf scaffold_2 . repeat_region 648369 648398 . ? . description=trf scaffold_2 . repeat_region 648872 648903 . ? . description=trf scaffold_2 . biological_region 649077 649079 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 640846 643204 . + . ID=Phyra73145;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000210;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 640846 643204 . + . ID=Phyra73145;Parent=Phyra73145;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 640846 640977 . + 0 ID=Phyra73145;Parent=Phyra73145;rank=1 scaffold_2 . exon 640846 640977 . + . ID=Phyra73145.1;Parent=Phyra73145;constitutive=1;rank=1 scaffold_2 . CDS 641105 641512 . + 0 ID=Phyra73145;Parent=Phyra73145;rank=2 scaffold_2 . exon 641105 641512 . + . ID=Phyra73145.2;Parent=Phyra73145;constitutive=1;rank=2 scaffold_2 . CDS 641585 641753 . + 0 ID=Phyra73145;Parent=Phyra73145;rank=3 scaffold_2 . exon 641585 641753 . + . ID=Phyra73145.3;Parent=Phyra73145;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 641774 641919 . + 0 ID=Phyra73145;Parent=Phyra73145;rank=4 scaffold_2 . exon 641774 641919 . + . ID=Phyra73145.4;Parent=Phyra73145;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 642006 642150 . + 0 ID=Phyra73145;Parent=Phyra73145;rank=5 scaffold_2 . exon 642006 642150 . + . ID=Phyra73145.5;Parent=Phyra73145;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_2 . CDS 642215 642420 . + 0 ID=Phyra73145;Parent=Phyra73145;rank=6 scaffold_2 . exon 642215 642420 . + . ID=Phyra73145.6;Parent=Phyra73145;constitutive=1;ensembl_phase=1;rank=6 scaffold_2 . CDS 642534 642979 . + 0 ID=Phyra73145;Parent=Phyra73145;rank=7 scaffold_2 . exon 642534 642979 . + . ID=Phyra73145.7;Parent=Phyra73145;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_2 . CDS 643054 643204 . + 0 ID=Phyra73145;Parent=Phyra73145;rank=8 scaffold_2 . exon 643054 643204 . + . ID=Phyra73145.8;Parent=Phyra73145;constitutive=1;ensembl_phase=2;rank=8 scaffold_2 ensembl protein_coding_gene 643446 645232 . - . ID=Phyra73146;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000211;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 643446 645232 . - . ID=Phyra73146;Parent=Phyra73146;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 643446 645011 . - 0 ID=Phyra73146;Parent=Phyra73146;rank=2 scaffold_2 . exon 643446 645011 . - . ID=Phyra73146.2;Parent=Phyra73146;constitutive=1;rank=2 scaffold_2 . CDS 645104 645232 . - 0 ID=Phyra73146;Parent=Phyra73146;rank=1 scaffold_2 . exon 645104 645232 . - . ID=Phyra73146.1;Parent=Phyra73146;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 652646 654400 . - . ID=Phyra93503;biotype=protein_coding;external_name=C_scaffold_2000105;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 652646 654400 . - . ID=Phyra93503;Parent=Phyra93503;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 652646 652990 . - 0 ID=Phyra93503;Parent=Phyra93503;rank=6 scaffold_2 . exon 652646 652990 . - . ID=Phyra93503.6;Parent=Phyra93503;constitutive=1;rank=6 scaffold_2 . CDS 653212 653253 . - 0 ID=Phyra93503;Parent=Phyra93503;rank=5 scaffold_2 . exon 653212 653253 . - . ID=Phyra93503.5;Parent=Phyra93503;constitutive=1;rank=5 scaffold_2 . CDS 653321 653554 . - 0 ID=Phyra93503;Parent=Phyra93503;rank=4 scaffold_2 . exon 653321 653554 . - . ID=Phyra93503.4;Parent=Phyra93503;constitutive=1;rank=4 scaffold_2 . CDS 653622 653834 . - 0 ID=Phyra93503;Parent=Phyra93503;rank=3 scaffold_2 . exon 653622 653834 . - . ID=Phyra93503.3;Parent=Phyra93503;constitutive=1;rank=3 scaffold_2 . CDS 654084 654219 . - 0 ID=Phyra93503;Parent=Phyra93503;rank=2 scaffold_2 . exon 654084 654219 . - . ID=Phyra93503.2;Parent=Phyra93503;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 654339 654400 . - 0 ID=Phyra93503;Parent=Phyra93503;rank=1 scaffold_2 . exon 654339 654400 . - . ID=Phyra93503.1;Parent=Phyra93503;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 654903 657661 . + . ID=Phyra93505;biotype=protein_coding;external_name=C_scaffold_2000107;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 654903 657661 . + . ID=Phyra93505;Parent=Phyra93505;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . exon 654903 655098 . + . ID=Phyra93505.1;Parent=Phyra93505;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 654904 655098 . + 0 ID=Phyra93505;Parent=Phyra93505;rank=1 scaffold_2 . CDS 655165 655236 . + 0 ID=Phyra93505;Parent=Phyra93505;rank=2 scaffold_2 . exon 655165 655236 . + . ID=Phyra93505.2;Parent=Phyra93505;constitutive=1;rank=2 scaffold_2 . CDS 655298 655513 . + 0 ID=Phyra93505;Parent=Phyra93505;rank=3 scaffold_2 . exon 655298 655513 . + . ID=Phyra93505.3;Parent=Phyra93505;constitutive=1;rank=3 scaffold_2 . CDS 655838 655918 . + 0 ID=Phyra93505;Parent=Phyra93505;rank=4 scaffold_2 . exon 655838 655918 . + . ID=Phyra93505.4;Parent=Phyra93505;constitutive=1;rank=4 scaffold_2 . CDS 656540 656650 . + 0 ID=Phyra93505;Parent=Phyra93505;rank=5 scaffold_2 . exon 656540 656650 . + . ID=Phyra93505.5;Parent=Phyra93505;constitutive=1;rank=5 scaffold_2 . CDS 656723 656972 . + 0 ID=Phyra93505;Parent=Phyra93505;rank=6 scaffold_2 . exon 656723 656972 . + . ID=Phyra93505.6;Parent=Phyra93505;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_2 . CDS 657069 657661 . + 0 ID=Phyra93505;Parent=Phyra93505;rank=7 scaffold_2 . exon 657069 657661 . + . ID=Phyra93505.7;Parent=Phyra93505;constitutive=1;ensembl_phase=1;rank=7 scaffold_2 ensembl protein_coding_gene 657899 659248 . - . ID=Phyra93506;biotype=protein_coding;external_name=C_scaffold_2000108;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 657899 659248 . - . ID=Phyra93506;Parent=Phyra93506;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 657899 658677 . - 0 ID=Phyra93506;Parent=Phyra93506;rank=2 scaffold_2 . exon 657899 658677 . - . ID=Phyra93506.2;Parent=Phyra93506;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 658702 659248 . - 0 ID=Phyra93506;Parent=Phyra93506;rank=1 scaffold_2 . exon 658702 659248 . - . ID=Phyra93506.1;Parent=Phyra93506;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . repeat_region 659927 659945 . ? . description=dust scaffold_2 . biological_region 660396 660400 0.999 + . logic_name=eponine scaffold_2 . biological_region 661060 661063 0.999 + . logic_name=eponine scaffold_2 . repeat_region 665042 665049 . ? . description=dust scaffold_2 ensembl protein_coding_gene 660176 661294 . + . ID=Phyra73150;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000215;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 660176 661294 . + . ID=Phyra73150;Parent=Phyra73150;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 660176 661294 . + 0 ID=Phyra73150;Parent=Phyra73150;rank=1 scaffold_2 . exon 660176 661294 . + . ID=Phyra73150.1;Parent=Phyra73150;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 661550 664020 . + . ID=Phyra73151;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000216;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 661550 664020 . + . ID=Phyra73151;Parent=Phyra73151;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 661550 661582 . + 0 ID=Phyra73151;Parent=Phyra73151;rank=1 scaffold_2 . exon 661550 661582 . + . ID=Phyra73151.1;Parent=Phyra73151;constitutive=1;rank=1 scaffold_2 . CDS 661712 661894 . + 0 ID=Phyra73151;Parent=Phyra73151;rank=2 scaffold_2 . exon 661712 661894 . + . ID=Phyra73151.2;Parent=Phyra73151;constitutive=1;rank=2 scaffold_2 . CDS 661979 662284 . + 0 ID=Phyra73151;Parent=Phyra73151;rank=3 scaffold_2 . exon 661979 662284 . + . ID=Phyra73151.3;Parent=Phyra73151;constitutive=1;rank=3 scaffold_2 . CDS 662373 663083 . + 0 ID=Phyra73151;Parent=Phyra73151;rank=4 scaffold_2 . exon 662373 663083 . + . ID=Phyra73151.4;Parent=Phyra73151;constitutive=1;rank=4 scaffold_2 . CDS 663164 663238 . + 0 ID=Phyra73151;Parent=Phyra73151;rank=5 scaffold_2 . exon 663164 663238 . + . ID=Phyra73151.5;Parent=Phyra73151;constitutive=1;rank=5 scaffold_2 . CDS 663314 663427 . + 0 ID=Phyra73151;Parent=Phyra73151;rank=6 scaffold_2 . exon 663314 663427 . + . ID=Phyra73151.6;Parent=Phyra73151;constitutive=1;rank=6 scaffold_2 . CDS 663505 664020 . + 0 ID=Phyra73151;Parent=Phyra73151;rank=7 scaffold_2 . exon 663505 664020 . + . ID=Phyra73151.7;Parent=Phyra73151;constitutive=1;rank=7 scaffold_2 ensembl protein_coding_gene 665156 666778 . - . ID=Phyra73152;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000217;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 665156 666778 . - . ID=Phyra73152;Parent=Phyra73152;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 665156 666778 . - 0 ID=Phyra73152;Parent=Phyra73152;rank=1 scaffold_2 . exon 665156 666778 . - . ID=Phyra73152.1;Parent=Phyra73152;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 675616 677168 . - . ID=Phyra71081;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000022;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 675616 677168 . - . ID=Phyra71081;Parent=Phyra71081;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 675616 676917 . - 0 ID=Phyra71081;Parent=Phyra71081;rank=2 scaffold_2 . exon 675616 676917 . - . ID=Phyra71081.2;Parent=Phyra71081;constitutive=1;rank=2 scaffold_2 . CDS 676995 677168 . - 0 ID=Phyra71081;Parent=Phyra71081;rank=1 scaffold_2 . exon 676995 677168 . - . ID=Phyra71081.1;Parent=Phyra71081;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 670156 670866 . + . ID=Phyra73153;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000218;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 670156 670866 . + . ID=Phyra73153;Parent=Phyra73153;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 670156 670866 . + 0 ID=Phyra73153;Parent=Phyra73153;rank=1 scaffold_2 . exon 670156 670866 . + . ID=Phyra73153.1;Parent=Phyra73153;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 670943 671396 . - . ID=Phyra73154;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000219;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 670943 671396 . - . ID=Phyra73154;Parent=Phyra73154;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 670943 671040 . - 0 ID=Phyra73154;Parent=Phyra73154;rank=2 scaffold_2 . exon 670943 671040 . - . ID=Phyra73154.2;Parent=Phyra73154;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 671123 671396 . - 0 ID=Phyra73154;Parent=Phyra73154;rank=1 scaffold_2 . exon 671123 671396 . - . ID=Phyra73154.1;Parent=Phyra73154;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 671506 673291 . - . ID=Phyra73155;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000220;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 671506 673291 . - . ID=Phyra73155;Parent=Phyra73155;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 671506 671904 . - 0 ID=Phyra73155;Parent=Phyra73155;rank=6 scaffold_2 . exon 671506 671904 . - . ID=Phyra73155.6;Parent=Phyra73155;constitutive=1;rank=6 scaffold_2 . CDS 671968 672330 . - 0 ID=Phyra73155;Parent=Phyra73155;rank=5 scaffold_2 . exon 671968 672330 . - . ID=Phyra73155.5;Parent=Phyra73155;constitutive=1;rank=5 scaffold_2 . CDS 672395 672551 . - 0 ID=Phyra73155;Parent=Phyra73155;rank=4 scaffold_2 . exon 672395 672551 . - . ID=Phyra73155.4;Parent=Phyra73155;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 672618 672781 . - 0 ID=Phyra73155;Parent=Phyra73155;rank=3 scaffold_2 . exon 672618 672781 . - . ID=Phyra73155.3;Parent=Phyra73155;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 672844 673059 . - 0 ID=Phyra73155;Parent=Phyra73155;rank=2 scaffold_2 . exon 672844 673059 . - . ID=Phyra73155.2;Parent=Phyra73155;constitutive=1;rank=2 scaffold_2 . CDS 673130 673291 . - 0 ID=Phyra73155;Parent=Phyra73155;rank=1 scaffold_2 . exon 673130 673291 . - . ID=Phyra73155.1;Parent=Phyra73155;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 673473 674832 . - . ID=Phyra73156;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000221;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 673473 674832 . - . ID=Phyra73156;Parent=Phyra73156;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 673473 673752 . - 0 ID=Phyra73156;Parent=Phyra73156;rank=5 scaffold_2 . exon 673473 673752 . - . ID=Phyra73156.5;Parent=Phyra73156;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 673820 673944 . - 0 ID=Phyra73156;Parent=Phyra73156;rank=4 scaffold_2 . exon 673820 673944 . - . ID=Phyra73156.4;Parent=Phyra73156;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . CDS 674018 674380 . - 0 ID=Phyra73156;Parent=Phyra73156;rank=3 scaffold_2 . exon 674018 674380 . - . ID=Phyra73156.3;Parent=Phyra73156;constitutive=1;rank=3 scaffold_2 . CDS 674447 674525 . - 0 ID=Phyra73156;Parent=Phyra73156;rank=2 scaffold_2 . exon 674447 674525 . - . ID=Phyra73156.2;Parent=Phyra73156;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 674606 674832 . - 0 ID=Phyra73156;Parent=Phyra73156;rank=1 scaffold_2 . exon 674606 674832 . - . ID=Phyra73156.1;Parent=Phyra73156;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 677861 680326 . + . ID=Phyra73158;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000223;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 677861 680326 . + . ID=Phyra73158;Parent=Phyra73158;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 677861 679099 . + 0 ID=Phyra73158;Parent=Phyra73158;rank=1 scaffold_2 . exon 677861 679099 . + . ID=Phyra73158.1;Parent=Phyra73158;constitutive=1;rank=1 scaffold_2 . CDS 679187 679446 . + 0 ID=Phyra73158;Parent=Phyra73158;rank=2 scaffold_2 . exon 679187 679446 . + . ID=Phyra73158.2;Parent=Phyra73158;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 679534 679756 . + 0 ID=Phyra73158;Parent=Phyra73158;rank=3 scaffold_2 . CDS 679835 679899 . + 0 ID=Phyra73158;Parent=Phyra73158;rank=4 scaffold_2 . CDS 679973 680123 . + 0 ID=Phyra73158;Parent=Phyra73158;rank=5 scaffold_2 . CDS 680207 680326 . + 0 ID=Phyra73158;Parent=Phyra73158;rank=6 scaffold_2 . biological_region 681069 681070 0.999 + . logic_name=eponine scaffold_2 . biological_region 681792 681796 0.999 - . logic_name=eponine scaffold_2 . repeat_region 684832 684864 . ? . description=trf scaffold_2 . repeat_region 686898 686936 . ? . description=trf scaffold_2 ensembl protein_coding_gene 687461 688786 . + . ID=Phyra43908;biotype=protein_coding;external_name=gwEuk.2.159.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 687461 688786 . + . ID=Phyra43908;Parent=Phyra43908;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 687461 688786 . + 0 ID=Phyra43908;Parent=Phyra43908;rank=1 scaffold_2 . exon 687461 688786 . + . ID=Phyra43908.1;Parent=Phyra43908;constitutive=1;rank=1 scaffold_2 . exon 679534 679756 . + . ID=Phyra73158.3;Parent=Phyra73158;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . exon 679835 679899 . + . ID=Phyra73158.4;Parent=Phyra73158;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . exon 679973 680123 . + . ID=Phyra73158.5;Parent=Phyra73158;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . exon 680207 680326 . + . ID=Phyra73158.6;Parent=Phyra73158;constitutive=1;rank=6 scaffold_2 ensembl protein_coding_gene 680720 682068 . + . ID=Phyra73159;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000224;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 680720 682068 . + . ID=Phyra73159;Parent=Phyra73159;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 680720 681222 . + 0 ID=Phyra73159;Parent=Phyra73159;rank=1 scaffold_2 . exon 680720 681222 . + . ID=Phyra73159.1;Parent=Phyra73159;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 681294 682068 . + 0 ID=Phyra73159;Parent=Phyra73159;rank=2 scaffold_2 . exon 681294 682068 . + . ID=Phyra73159.2;Parent=Phyra73159;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 ensembl protein_coding_gene 684631 686158 . + . ID=Phyra73161;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000226;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 684631 686158 . + . ID=Phyra73161;Parent=Phyra73161;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 684631 685549 . + 0 ID=Phyra73161;Parent=Phyra73161;rank=1 scaffold_2 . exon 684631 685549 . + . ID=Phyra73161.1;Parent=Phyra73161;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 685919 685953 . + 0 ID=Phyra73161;Parent=Phyra73161;rank=2 scaffold_2 . exon 685919 685953 . + . ID=Phyra73161.2;Parent=Phyra73161;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 686024 686158 . + 0 ID=Phyra73161;Parent=Phyra73161;rank=3 scaffold_2 . exon 686024 686158 . + . ID=Phyra73161.3;Parent=Phyra73161;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 682215 684219 . - . ID=Phyra93510;biotype=protein_coding;external_name=C_scaffold_2000112;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 682215 684219 . - . ID=Phyra93510;Parent=Phyra93510;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 682215 682499 . - 0 ID=Phyra93510;Parent=Phyra93510;rank=3 scaffold_2 . exon 682215 682499 . - . ID=Phyra93510.3;Parent=Phyra93510;constitutive=1;rank=3 scaffold_2 . CDS 682563 682809 . - 0 ID=Phyra93510;Parent=Phyra93510;rank=2 scaffold_2 . exon 682563 682809 . - . ID=Phyra93510.2;Parent=Phyra93510;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 682868 684219 . - 0 ID=Phyra93510;Parent=Phyra93510;rank=1 scaffold_2 . exon 682868 684219 . - . ID=Phyra93510.1;Parent=Phyra93510;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . repeat_region 694827 694834 . ? . description=dust scaffold_2 . repeat_region 695427 695450 . ? . description=dust scaffold_2 ensembl protein_coding_gene 699337 699998 . + . ID=Phyra43914;biotype=protein_coding;external_name=gwEuk.2.165.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 699337 699998 . + . ID=Phyra43914;Parent=Phyra43914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 699337 699795 . + 0 ID=Phyra43914;Parent=Phyra43914;rank=1 scaffold_2 . exon 699337 699795 . + . ID=Phyra43914.1;Parent=Phyra43914;constitutive=1;rank=1 scaffold_2 . CDS 699879 699998 . + 0 ID=Phyra43914;Parent=Phyra43914;rank=2 scaffold_2 ensembl protein_coding_gene 698062 699043 . - . ID=Phyra71082;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000023;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 698062 699043 . - . ID=Phyra71082;Parent=Phyra71082;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 698062 698255 . - 0 ID=Phyra71082;Parent=Phyra71082;rank=4 scaffold_2 . exon 698062 698255 . - . ID=Phyra71082.4;Parent=Phyra71082;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 698328 698518 . - 0 ID=Phyra71082;Parent=Phyra71082;rank=3 scaffold_2 . exon 698328 698518 . - . ID=Phyra71082.3;Parent=Phyra71082;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 698584 698792 . - 0 ID=Phyra71082;Parent=Phyra71082;rank=2 scaffold_2 . exon 698584 698792 . - . ID=Phyra71082.2;Parent=Phyra71082;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 698867 699043 . - 0 ID=Phyra71082;Parent=Phyra71082;rank=1 scaffold_2 . exon 698867 699043 . - . ID=Phyra71082.1;Parent=Phyra71082;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 692056 693312 . + . ID=Phyra73162;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000227;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 692056 693312 . + . ID=Phyra73162;Parent=Phyra73162;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 692056 693312 . + 0 ID=Phyra73162;Parent=Phyra73162;rank=1 scaffold_2 . exon 692056 693312 . + . ID=Phyra73162.1;Parent=Phyra73162;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 693780 695286 . - . ID=Phyra73163;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000228;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 693780 695286 . - . ID=Phyra73163;Parent=Phyra73163;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 693780 693793 . - 0 ID=Phyra73163;Parent=Phyra73163;rank=4 scaffold_2 . exon 693780 693793 . - . ID=Phyra73163.4;Parent=Phyra73163;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 693816 694809 . - 0 ID=Phyra73163;Parent=Phyra73163;rank=3 scaffold_2 . exon 693816 694809 . - . ID=Phyra73163.3;Parent=Phyra73163;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 694899 695071 . - 0 ID=Phyra73163;Parent=Phyra73163;rank=2 scaffold_2 . exon 694899 695071 . - . ID=Phyra73163.2;Parent=Phyra73163;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 695163 695286 . - 0 ID=Phyra73163;Parent=Phyra73163;rank=1 scaffold_2 . exon 695163 695286 . - . ID=Phyra73163.1;Parent=Phyra73163;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 696156 697961 . + . ID=Phyra73164;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000229;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 696156 697961 . + . ID=Phyra73164;Parent=Phyra73164;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 696156 697961 . + 0 ID=Phyra73164;Parent=Phyra73164;rank=1 scaffold_2 . exon 696156 697961 . + . ID=Phyra73164.1;Parent=Phyra73164;constitutive=1;rank=1 scaffold_2 . biological_region 699600 699604 0.999 - . logic_name=eponine scaffold_2 . biological_region 702126 702131 0.999 - . logic_name=eponine scaffold_2 . biological_region 702142 702143 0.999 - . logic_name=eponine scaffold_2 . repeat_region 704509 704560 . ? . description=trf scaffold_2 . biological_region 704998 704999 0.999 - . logic_name=eponine scaffold_2 . biological_region 705990 705992 0.999 + . logic_name=eponine scaffold_2 . biological_region 706119 706119 0.999 - . logic_name=eponine scaffold_2 . exon 699879 699998 . + . ID=Phyra43914.2;Parent=Phyra43914;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 702473 703342 . + . ID=Phyra71083;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000024;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 702473 703342 . + . ID=Phyra71083;Parent=Phyra71083;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 702473 703342 . + 0 ID=Phyra71083;Parent=Phyra71083;rank=1 scaffold_2 . exon 702473 703342 . + . ID=Phyra71083.1;Parent=Phyra71083;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 703553 704880 . - . ID=Phyra73169;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000234;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 703553 704880 . - . ID=Phyra73169;Parent=Phyra73169;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 703553 703651 . - 0 ID=Phyra73169;Parent=Phyra73169;rank=5 scaffold_2 . exon 703553 703651 . - . ID=Phyra73169.5;Parent=Phyra73169;constitutive=1;rank=5 scaffold_2 . CDS 703724 703891 . - 0 ID=Phyra73169;Parent=Phyra73169;rank=4 scaffold_2 . exon 703724 703891 . - . ID=Phyra73169.4;Parent=Phyra73169;constitutive=1;rank=4 scaffold_2 . CDS 703963 704129 . - 0 ID=Phyra73169;Parent=Phyra73169;rank=3 scaffold_2 . exon 703963 704129 . - . ID=Phyra73169.3;Parent=Phyra73169;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 704227 704632 . - 0 ID=Phyra73169;Parent=Phyra73169;rank=2 scaffold_2 . exon 704227 704632 . - . ID=Phyra73169.2;Parent=Phyra73169;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 704707 704880 . - 0 ID=Phyra73169;Parent=Phyra73169;rank=1 scaffold_2 . exon 704707 704880 . - . ID=Phyra73169.1;Parent=Phyra73169;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 705760 710089 . + . ID=Phyra73170;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000235;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 705760 710089 . + . ID=Phyra73170;Parent=Phyra73170;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 705760 705823 . + 0 ID=Phyra73170;Parent=Phyra73170;rank=1 scaffold_2 . exon 705760 705823 . + . ID=Phyra73170.1;Parent=Phyra73170;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 705939 710089 . + 0 ID=Phyra73170;Parent=Phyra73170;rank=2 scaffold_2 . exon 705939 710089 . + . ID=Phyra73170.2;Parent=Phyra73170;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 ensembl protein_coding_gene 701347 702209 . - . ID=Phyra93516;biotype=protein_coding;external_name=C_scaffold_2000118;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 701347 702209 . - . ID=Phyra93516;Parent=Phyra93516;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 701347 701415 . - 0 ID=Phyra93516;Parent=Phyra93516;rank=5 scaffold_2 . exon 701347 701415 . - . ID=Phyra93516.5;Parent=Phyra93516;constitutive=1;rank=5 scaffold_2 . CDS 701488 701639 . - 0 ID=Phyra93516;Parent=Phyra93516;rank=4 scaffold_2 . exon 701488 701639 . - . ID=Phyra93516.4;Parent=Phyra93516;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 701714 701937 . - 0 ID=Phyra93516;Parent=Phyra93516;rank=3 scaffold_2 . exon 701714 701937 . - . ID=Phyra93516.3;Parent=Phyra93516;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 701999 702135 . - 0 ID=Phyra93516;Parent=Phyra93516;rank=2 scaffold_2 . exon 701999 702135 . - . ID=Phyra93516.2;Parent=Phyra93516;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 702195 702209 . - 0 ID=Phyra93516;Parent=Phyra93516;rank=1 scaffold_2 . exon 702195 702209 . - . ID=Phyra93516.1;Parent=Phyra93516;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 715382 716767 . - . ID=Phyra43922;biotype=protein_coding;external_name=gwEuk.2.173.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 715382 716767 . - . ID=Phyra43922;Parent=Phyra43922;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 715382 716767 . - 0 ID=Phyra43922;Parent=Phyra43922;rank=1 scaffold_2 . exon 715382 716767 . - . ID=Phyra43922.1;Parent=Phyra43922;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 713639 714920 . - . ID=Phyra73172;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000237;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 713639 714920 . - . ID=Phyra73172;Parent=Phyra73172;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 713639 713653 . - 0 ID=Phyra73172;Parent=Phyra73172;rank=2 scaffold_2 . exon 713639 713653 . - . ID=Phyra73172.2;Parent=Phyra73172;constitutive=1;rank=2 scaffold_2 . CDS 713853 714920 . - 0 ID=Phyra73172;Parent=Phyra73172;rank=1 scaffold_2 . exon 713853 714920 . - . ID=Phyra73172.1;Parent=Phyra73172;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 717397 719063 . + . ID=Phyra73174;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000239;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 717397 719063 . + . ID=Phyra73174;Parent=Phyra73174;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 717397 718123 . + 0 ID=Phyra73174;Parent=Phyra73174;rank=1 scaffold_2 . exon 717397 718123 . + . ID=Phyra73174.1;Parent=Phyra73174;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 718192 719063 . + 0 ID=Phyra73174;Parent=Phyra73174;rank=2 scaffold_2 . exon 718192 719063 . + . ID=Phyra73174.2;Parent=Phyra73174;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 ensembl protein_coding_gene 719215 722324 . - . ID=Phyra73175;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000240;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 719215 722324 . - . ID=Phyra73175;Parent=Phyra73175;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 719215 719289 . - 0 ID=Phyra73175;Parent=Phyra73175;rank=11 scaffold_2 . exon 719215 719289 . - . ID=Phyra73175.11;Parent=Phyra73175;constitutive=1;rank=11 scaffold_2 . CDS 719447 719582 . - 0 ID=Phyra73175;Parent=Phyra73175;rank=10 scaffold_2 . exon 719447 719582 . - . ID=Phyra73175.10;Parent=Phyra73175;constitutive=1;ensembl_phase=2;rank=10 scaffold_2 . CDS 719647 720122 . - 0 ID=Phyra73175;Parent=Phyra73175;rank=9 scaffold_2 . CDS 720187 720334 . - 0 ID=Phyra73175;Parent=Phyra73175;rank=8 scaffold_2 . CDS 720403 721061 . - 0 ID=Phyra73175;Parent=Phyra73175;rank=7 scaffold_2 . CDS 721120 721215 . - 0 ID=Phyra73175;Parent=Phyra73175;rank=6 scaffold_2 . CDS 721486 721565 . - 0 ID=Phyra73175;Parent=Phyra73175;rank=5 scaffold_2 . CDS 721695 721766 . - 0 ID=Phyra73175;Parent=Phyra73175;rank=4 scaffold_2 . CDS 721840 721918 . - 0 ID=Phyra73175;Parent=Phyra73175;rank=3 scaffold_2 . CDS 721998 722199 . - 0 ID=Phyra73175;Parent=Phyra73175;rank=2 scaffold_2 . CDS 722260 722324 . - 0 ID=Phyra73175;Parent=Phyra73175;rank=1 scaffold_2 ensembl protein_coding_gene 710198 712082 . + . ID=Phyra93518;biotype=protein_coding;external_name=C_scaffold_2000120;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 710198 712082 . + . ID=Phyra93518;Parent=Phyra93518;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 710198 710411 . + 0 ID=Phyra93518;Parent=Phyra93518;rank=1 scaffold_2 . exon 710198 710411 . + . ID=Phyra93518.1;Parent=Phyra93518;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 710490 710611 . + 0 ID=Phyra93518;Parent=Phyra93518;rank=2 scaffold_2 . exon 710490 710611 . + . ID=Phyra93518.2;Parent=Phyra93518;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 710687 710779 . + 0 ID=Phyra93518;Parent=Phyra93518;rank=3 scaffold_2 . exon 710687 710779 . + . ID=Phyra93518.3;Parent=Phyra93518;constitutive=1;rank=3 scaffold_2 . CDS 710849 710914 . + 0 ID=Phyra93518;Parent=Phyra93518;rank=4 scaffold_2 . exon 710849 710914 . + . ID=Phyra93518.4;Parent=Phyra93518;constitutive=1;rank=4 scaffold_2 . CDS 710992 711034 . + 0 ID=Phyra93518;Parent=Phyra93518;rank=5 scaffold_2 . exon 710992 711034 . + . ID=Phyra93518.5;Parent=Phyra93518;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_2 . CDS 711215 711277 . + 0 ID=Phyra93518;Parent=Phyra93518;rank=6 scaffold_2 . exon 711215 711277 . + . ID=Phyra93518.6;Parent=Phyra93518;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_2 . CDS 711346 711587 . + 0 ID=Phyra93518;Parent=Phyra93518;rank=7 scaffold_2 . exon 711346 711587 . + . ID=Phyra93518.7;Parent=Phyra93518;constitutive=1;ensembl_phase=1;rank=7 scaffold_2 . CDS 711669 711947 . + 0 ID=Phyra93518;Parent=Phyra93518;rank=8 scaffold_2 . exon 711669 711947 . + . ID=Phyra93518.8;Parent=Phyra93518;constitutive=1;rank=8 scaffold_2 . CDS 712020 712082 . + 0 ID=Phyra93518;Parent=Phyra93518;rank=9 scaffold_2 . exon 712020 712082 . + . ID=Phyra93518.9;Parent=Phyra93518;constitutive=1;rank=9 scaffold_2 . biological_region 722368 722370 0.999 - . logic_name=eponine scaffold_2 . biological_region 724790 724797 0.999 - . logic_name=eponine scaffold_2 . repeat_region 725638 725649 . ? . description=dust scaffold_2 . biological_region 725999 726004 0.999 + . logic_name=eponine scaffold_2 . repeat_region 726657 726676 . ? . description=trf scaffold_2 . repeat_region 728466 728504 . ? . description=trf scaffold_2 . exon 719647 720122 . - . ID=Phyra73175.9;Parent=Phyra73175;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_2 . exon 720187 720334 . - . ID=Phyra73175.8;Parent=Phyra73175;constitutive=1;ensembl_phase=2;rank=8 scaffold_2 . exon 720403 721061 . - . ID=Phyra73175.7;Parent=Phyra73175;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_2 . exon 721120 721215 . - . ID=Phyra73175.6;Parent=Phyra73175;constitutive=1;rank=6 scaffold_2 . exon 721486 721565 . - . ID=Phyra73175.5;Parent=Phyra73175;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . exon 721695 721766 . - . ID=Phyra73175.4;Parent=Phyra73175;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_2 . exon 721840 721918 . - . ID=Phyra73175.3;Parent=Phyra73175;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . exon 721998 722199 . - . ID=Phyra73175.2;Parent=Phyra73175;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . exon 722260 722324 . - . ID=Phyra73175.1;Parent=Phyra73175;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 722601 724908 . - . ID=Phyra73176;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000241;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 722601 724908 . - . ID=Phyra73176;Parent=Phyra73176;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 722601 722695 . - 0 ID=Phyra73176;Parent=Phyra73176;rank=11 scaffold_2 . exon 722601 722695 . - . ID=Phyra73176.11;Parent=Phyra73176;constitutive=1;ensembl_phase=1;rank=11 scaffold_2 . CDS 722792 723262 . - 0 ID=Phyra73176;Parent=Phyra73176;rank=10 scaffold_2 . exon 722792 723262 . - . ID=Phyra73176.10;Parent=Phyra73176;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_2 . CDS 723325 723534 . - 0 ID=Phyra73176;Parent=Phyra73176;rank=9 scaffold_2 . exon 723325 723534 . - . ID=Phyra73176.9;Parent=Phyra73176;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_2 . CDS 723608 723640 . - 0 ID=Phyra73176;Parent=Phyra73176;rank=8 scaffold_2 . exon 723608 723640 . - . ID=Phyra73176.8;Parent=Phyra73176;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_2 . CDS 723723 723831 . - 0 ID=Phyra73176;Parent=Phyra73176;rank=7 scaffold_2 . exon 723723 723831 . - . ID=Phyra73176.7;Parent=Phyra73176;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_2 . CDS 723912 724026 . - 0 ID=Phyra73176;Parent=Phyra73176;rank=6 scaffold_2 . exon 723912 724026 . - . ID=Phyra73176.6;Parent=Phyra73176;constitutive=1;ensembl_phase=2;rank=6 scaffold_2 . CDS 724089 724159 . - 0 ID=Phyra73176;Parent=Phyra73176;rank=5 scaffold_2 . exon 724089 724159 . - . ID=Phyra73176.5;Parent=Phyra73176;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_2 . CDS 724224 724313 . - 0 ID=Phyra73176;Parent=Phyra73176;rank=4 scaffold_2 . exon 724224 724313 . - . ID=Phyra73176.4;Parent=Phyra73176;constitutive=1;rank=4 scaffold_2 . CDS 724388 724507 . - 0 ID=Phyra73176;Parent=Phyra73176;rank=3 scaffold_2 . exon 724388 724507 . - . ID=Phyra73176.3;Parent=Phyra73176;constitutive=1;rank=3 scaffold_2 . CDS 724574 724651 . - 0 ID=Phyra73176;Parent=Phyra73176;rank=2 scaffold_2 . exon 724574 724651 . - . ID=Phyra73176.2;Parent=Phyra73176;constitutive=1;rank=2 scaffold_2 . CDS 724699 724908 . - 0 ID=Phyra73176;Parent=Phyra73176;rank=1 scaffold_2 . exon 724699 724908 . - . ID=Phyra73176.1;Parent=Phyra73176;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 729292 731949 . + . ID=Phyra73177;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000242;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 729292 731949 . + . ID=Phyra73177;Parent=Phyra73177;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 729292 731949 . + 0 ID=Phyra73177;Parent=Phyra73177;rank=1 scaffold_2 . exon 729292 731949 . + . ID=Phyra73177.1;Parent=Phyra73177;constitutive=1;rank=1 scaffold_2 . biological_region 741271 741272 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 745165 748077 . - . ID=Phyra43929;biotype=protein_coding;external_name=gwEuk.2.180.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 745165 748077 . - . ID=Phyra43929;Parent=Phyra43929;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 745165 745420 . - 0 ID=Phyra43929;Parent=Phyra43929;rank=2 scaffold_2 . exon 745165 745420 . - . ID=Phyra43929.2;Parent=Phyra43929;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 745571 748077 . - 0 ID=Phyra43929;Parent=Phyra43929;rank=1 scaffold_2 . exon 745571 748077 . - . ID=Phyra43929.1;Parent=Phyra43929;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 741186 744544 . + . ID=Phyra93522;biotype=protein_coding;external_name=C_scaffold_2000124;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 741186 744544 . + . ID=Phyra93522;Parent=Phyra93522;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 741186 741318 . + 0 ID=Phyra93522;Parent=Phyra93522;rank=1 scaffold_2 . exon 741186 741318 . + . ID=Phyra93522.1;Parent=Phyra93522;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 741385 741453 . + 0 ID=Phyra93522;Parent=Phyra93522;rank=2 scaffold_2 . exon 741385 741453 . + . ID=Phyra93522.2;Parent=Phyra93522;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 741935 742260 . + 0 ID=Phyra93522;Parent=Phyra93522;rank=3 scaffold_2 . exon 741935 742260 . + . ID=Phyra93522.3;Parent=Phyra93522;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 742294 742965 . + 0 ID=Phyra93522;Parent=Phyra93522;rank=4 scaffold_2 . exon 742294 742965 . + . ID=Phyra93522.4;Parent=Phyra93522;constitutive=1;rank=4 scaffold_2 . CDS 743137 743333 . + 0 ID=Phyra93522;Parent=Phyra93522;rank=5 scaffold_2 . exon 743137 743333 . + . ID=Phyra93522.5;Parent=Phyra93522;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_2 . CDS 743402 743474 . + 0 ID=Phyra93522;Parent=Phyra93522;rank=6 scaffold_2 . exon 743402 743474 . + . ID=Phyra93522.6;Parent=Phyra93522;constitutive=1;ensembl_phase=2;rank=6 scaffold_2 . CDS 744021 744296 . + 0 ID=Phyra93522;Parent=Phyra93522;rank=7 scaffold_2 . exon 744021 744296 . + . ID=Phyra93522.7;Parent=Phyra93522;constitutive=1;rank=7 scaffold_2 . CDS 744370 744477 . + 0 ID=Phyra93522;Parent=Phyra93522;rank=8 scaffold_2 . exon 744370 744477 . + . ID=Phyra93522.8;Parent=Phyra93522;constitutive=1;rank=8 scaffold_2 . CDS 744533 744544 . + 0 ID=Phyra93522;Parent=Phyra93522;rank=9 scaffold_2 . exon 744533 744544 . + . ID=Phyra93522.9;Parent=Phyra93522;constitutive=1;rank=9 scaffold_2 ensembl protein_coding_gene 748648 750650 . + . ID=Phyra93525;biotype=protein_coding;external_name=C_scaffold_2000127;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 748648 750650 . + . ID=Phyra93525;Parent=Phyra93525;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 748648 748691 . + 0 ID=Phyra93525;Parent=Phyra93525;rank=1 scaffold_2 . exon 748648 748691 . + . ID=Phyra93525.1;Parent=Phyra93525;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 748776 748877 . + 0 ID=Phyra93525;Parent=Phyra93525;rank=2 scaffold_2 . exon 748776 748877 . + . ID=Phyra93525.2;Parent=Phyra93525;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 748951 749035 . + 0 ID=Phyra93525;Parent=Phyra93525;rank=3 scaffold_2 . exon 748951 749035 . + . ID=Phyra93525.3;Parent=Phyra93525;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 749121 749168 . + 0 ID=Phyra93525;Parent=Phyra93525;rank=4 scaffold_2 . exon 749121 749168 . + . ID=Phyra93525.4;Parent=Phyra93525;constitutive=1;rank=4 scaffold_2 . CDS 749237 749299 . + 0 ID=Phyra93525;Parent=Phyra93525;rank=5 scaffold_2 . exon 749237 749299 . + . ID=Phyra93525.5;Parent=Phyra93525;constitutive=1;rank=5 scaffold_2 . CDS 749392 749445 . + 0 ID=Phyra93525;Parent=Phyra93525;rank=6 scaffold_2 . exon 749392 749445 . + . ID=Phyra93525.6;Parent=Phyra93525;constitutive=1;rank=6 scaffold_2 . CDS 749504 749578 . + 0 ID=Phyra93525;Parent=Phyra93525;rank=7 scaffold_2 . CDS 749640 749713 . + 0 ID=Phyra93525;Parent=Phyra93525;rank=8 scaffold_2 . CDS 749788 749950 . + 0 ID=Phyra93525;Parent=Phyra93525;rank=9 scaffold_2 . CDS 750228 750377 . + 0 ID=Phyra93525;Parent=Phyra93525;rank=10 scaffold_2 . CDS 750454 750510 . + 0 ID=Phyra93525;Parent=Phyra93525;rank=11 scaffold_2 . CDS 750645 750650 . + 0 ID=Phyra93525;Parent=Phyra93525;rank=12 scaffold_2 . repeat_region 753109 753128 . ? . description=trf scaffold_2 ensembl protein_coding_gene 758690 763001 . - . ID=Phyra43948;biotype=protein_coding;external_name=gwEuk.2.199.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 758690 763001 . - . ID=Phyra43948;Parent=Phyra43948;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 758690 758873 . - 0 ID=Phyra43948;Parent=Phyra43948;rank=5 scaffold_2 . exon 758690 758873 . - . ID=Phyra43948.5;Parent=Phyra43948;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 758940 759563 . - 0 ID=Phyra43948;Parent=Phyra43948;rank=4 scaffold_2 . exon 758940 759563 . - . ID=Phyra43948.4;Parent=Phyra43948;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_2 . CDS 759643 760113 . - 0 ID=Phyra43948;Parent=Phyra43948;rank=3 scaffold_2 . CDS 760558 761545 . - 0 ID=Phyra43948;Parent=Phyra43948;rank=2 scaffold_2 . CDS 761591 763001 . - 0 ID=Phyra43948;Parent=Phyra43948;rank=1 scaffold_2 ensembl protein_coding_gene 750805 752949 . - . ID=Phyra71085;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000026;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 750805 752949 . - . ID=Phyra71085;Parent=Phyra71085;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 750805 752949 . - 0 ID=Phyra71085;Parent=Phyra71085;rank=1 scaffold_2 . exon 750805 752949 . - . ID=Phyra71085.1;Parent=Phyra71085;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 757455 758570 . + . ID=Phyra71086;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000027;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 757455 758570 . + . ID=Phyra71086;Parent=Phyra71086;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 757455 758303 . + 0 ID=Phyra71086;Parent=Phyra71086;rank=1 scaffold_2 . exon 757455 758303 . + . ID=Phyra71086.1;Parent=Phyra71086;constitutive=1;rank=1 scaffold_2 . CDS 758367 758570 . + 0 ID=Phyra71086;Parent=Phyra71086;rank=2 scaffold_2 . exon 758367 758570 . + . ID=Phyra71086.2;Parent=Phyra71086;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 753633 756053 . + . ID=Phyra73182;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000247;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 753633 756053 . + . ID=Phyra73182;Parent=Phyra73182;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 753633 756053 . + 0 ID=Phyra73182;Parent=Phyra73182;rank=1 scaffold_2 . exon 753633 756053 . + . ID=Phyra73182.1;Parent=Phyra73182;constitutive=1;rank=1 scaffold_2 . exon 749504 749578 . + . ID=Phyra93525.7;Parent=Phyra93525;constitutive=1;rank=7 scaffold_2 . exon 749640 749713 . + . ID=Phyra93525.8;Parent=Phyra93525;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_2 . exon 749788 749950 . + . ID=Phyra93525.9;Parent=Phyra93525;constitutive=1;ensembl_phase=2;rank=9 scaffold_2 . exon 750228 750377 . + . ID=Phyra93525.10;Parent=Phyra93525;constitutive=1;rank=10 scaffold_2 . exon 750454 750510 . + . ID=Phyra93525.11;Parent=Phyra93525;constitutive=1;rank=11 scaffold_2 . exon 750645 750650 . + . ID=Phyra93525.12;Parent=Phyra93525;constitutive=1;rank=12 scaffold_2 . biological_region 762941 762947 0.999 - . logic_name=eponine scaffold_2 . biological_region 768547 768550 0.999 + . logic_name=eponine scaffold_2 . exon 759643 760113 . - . ID=Phyra43948.3;Parent=Phyra43948;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_2 . exon 760558 761545 . - . ID=Phyra43948.2;Parent=Phyra43948;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . exon 761591 763001 . - . ID=Phyra43948.1;Parent=Phyra43948;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 763296 766519 . + . ID=Phyra73185;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000250;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 763296 766519 . + . ID=Phyra73185;Parent=Phyra73185;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 763296 764627 . + 0 ID=Phyra73185;Parent=Phyra73185;rank=1 scaffold_2 . exon 763296 764627 . + . ID=Phyra73185.1;Parent=Phyra73185;constitutive=1;rank=1 scaffold_2 . CDS 764942 765739 . + 0 ID=Phyra73185;Parent=Phyra73185;rank=2 scaffold_2 . exon 764942 765739 . + . ID=Phyra73185.2;Parent=Phyra73185;constitutive=1;rank=2 scaffold_2 . CDS 765828 766052 . + 0 ID=Phyra73185;Parent=Phyra73185;rank=3 scaffold_2 . exon 765828 766052 . + . ID=Phyra73185.3;Parent=Phyra73185;constitutive=1;rank=3 scaffold_2 . CDS 766121 766342 . + 0 ID=Phyra73185;Parent=Phyra73185;rank=4 scaffold_2 . exon 766121 766342 . + . ID=Phyra73185.4;Parent=Phyra73185;constitutive=1;rank=4 scaffold_2 . CDS 766415 766519 . + 0 ID=Phyra73185;Parent=Phyra73185;rank=5 scaffold_2 . exon 766415 766519 . + . ID=Phyra73185.5;Parent=Phyra73185;constitutive=1;rank=5 scaffold_2 ensembl protein_coding_gene 766721 768277 . - . ID=Phyra73186;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000251;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 766721 768277 . - . ID=Phyra73186;Parent=Phyra73186;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 766721 768277 . - 0 ID=Phyra73186;Parent=Phyra73186;rank=1 scaffold_2 . exon 766721 768277 . - . ID=Phyra73186.1;Parent=Phyra73186;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 768535 769883 . - . ID=Phyra73187;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000252;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 768535 769883 . - . ID=Phyra73187;Parent=Phyra73187;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 768535 768654 . - 0 ID=Phyra73187;Parent=Phyra73187;rank=5 scaffold_2 . exon 768535 768654 . - . ID=Phyra73187.5;Parent=Phyra73187;constitutive=1;rank=5 scaffold_2 . CDS 768753 768842 . - 0 ID=Phyra73187;Parent=Phyra73187;rank=4 scaffold_2 . exon 768753 768842 . - . ID=Phyra73187.4;Parent=Phyra73187;constitutive=1;rank=4 scaffold_2 . CDS 768885 769429 . - 0 ID=Phyra73187;Parent=Phyra73187;rank=3 scaffold_2 . exon 768885 769429 . - . ID=Phyra73187.3;Parent=Phyra73187;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 769515 769570 . - 0 ID=Phyra73187;Parent=Phyra73187;rank=2 scaffold_2 . CDS 769645 769883 . - 0 ID=Phyra73187;Parent=Phyra73187;rank=1 scaffold_2 . exon 769515 769570 . - . ID=Phyra73187.2;Parent=Phyra73187;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . exon 769645 769883 . - . ID=Phyra73187.1;Parent=Phyra73187;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 770149 771014 . + . ID=Phyra73188;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000253;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 770149 771014 . + . ID=Phyra73188;Parent=Phyra73188;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 770149 770461 . + 0 ID=Phyra73188;Parent=Phyra73188;rank=1 scaffold_2 . exon 770149 770461 . + . ID=Phyra73188.1;Parent=Phyra73188;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 770544 770728 . + 0 ID=Phyra73188;Parent=Phyra73188;rank=2 scaffold_2 . exon 770544 770728 . + . ID=Phyra73188.2;Parent=Phyra73188;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 770797 770928 . + 0 ID=Phyra73188;Parent=Phyra73188;rank=3 scaffold_2 . exon 770797 770928 . + . ID=Phyra73188.3;Parent=Phyra73188;constitutive=1;rank=3 scaffold_2 . CDS 770988 771014 . + 0 ID=Phyra73188;Parent=Phyra73188;rank=4 scaffold_2 . exon 770988 771014 . + . ID=Phyra73188.4;Parent=Phyra73188;constitutive=1;rank=4 scaffold_2 ensembl protein_coding_gene 777420 779896 . + . ID=Phyra73189;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000254;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 777420 779896 . + . ID=Phyra73189;Parent=Phyra73189;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 777420 777882 . + 0 ID=Phyra73189;Parent=Phyra73189;rank=1 scaffold_2 . exon 777420 777882 . + . ID=Phyra73189.1;Parent=Phyra73189;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 777952 778251 . + 0 ID=Phyra73189;Parent=Phyra73189;rank=2 scaffold_2 . exon 777952 778251 . + . ID=Phyra73189.2;Parent=Phyra73189;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 778337 778582 . + 0 ID=Phyra73189;Parent=Phyra73189;rank=3 scaffold_2 . exon 778337 778582 . + . ID=Phyra73189.3;Parent=Phyra73189;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 779134 779216 . + 0 ID=Phyra73189;Parent=Phyra73189;rank=4 scaffold_2 . exon 779134 779216 . + . ID=Phyra73189.4;Parent=Phyra73189;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 779288 779367 . + 0 ID=Phyra73189;Parent=Phyra73189;rank=5 scaffold_2 . exon 779288 779367 . + . ID=Phyra73189.5;Parent=Phyra73189;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_2 . CDS 779433 779495 . + 0 ID=Phyra73189;Parent=Phyra73189;rank=6 scaffold_2 . exon 779433 779495 . + . ID=Phyra73189.6;Parent=Phyra73189;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_2 . CDS 779573 779690 . + 0 ID=Phyra73189;Parent=Phyra73189;rank=7 scaffold_2 . CDS 779756 779896 . + 0 ID=Phyra73189;Parent=Phyra73189;rank=8 scaffold_2 . repeat_region 779815 779882 . ? . description=trf scaffold_2 . biological_region 780488 780489 0.999 - . logic_name=eponine scaffold_2 . biological_region 783539 783541 0.999 - . logic_name=eponine scaffold_2 . biological_region 786005 786005 0.999 + . logic_name=eponine scaffold_2 . biological_region 786966 786970 0.999 + . logic_name=eponine scaffold_2 . biological_region 787286 787292 0.999 + . logic_name=eponine scaffold_2 . biological_region 787392 787397 0.999 - . logic_name=eponine scaffold_2 . biological_region 787429 787432 0.999 + . logic_name=eponine scaffold_2 . biological_region 787449 787452 0.999 + . logic_name=eponine scaffold_2 . biological_region 787457 787464 0.999 - . logic_name=eponine scaffold_2 . biological_region 788084 788087 0.999 - . logic_name=eponine scaffold_2 . biological_region 788137 788143 0.999 + . logic_name=eponine scaffold_2 . biological_region 788197 788201 0.999 + . logic_name=eponine scaffold_2 . biological_region 788224 788230 0.999 - . logic_name=eponine scaffold_2 . exon 779573 779690 . + . ID=Phyra73189.7;Parent=Phyra73189;constitutive=1;ensembl_phase=2;rank=7 scaffold_2 . exon 779756 779896 . + . ID=Phyra73189.8;Parent=Phyra73189;constitutive=1;rank=8 scaffold_2 ensembl protein_coding_gene 780104 780537 . - . ID=Phyra73190;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000255;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 780104 780537 . - . ID=Phyra73190;Parent=Phyra73190;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 780104 780312 . - 0 ID=Phyra73190;Parent=Phyra73190;rank=2 scaffold_2 . exon 780104 780312 . - . ID=Phyra73190.2;Parent=Phyra73190;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 780375 780537 . - 0 ID=Phyra73190;Parent=Phyra73190;rank=1 scaffold_2 . exon 780375 780537 . - . ID=Phyra73190.1;Parent=Phyra73190;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 780669 783365 . - . ID=Phyra73191;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000256;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 780669 783365 . - . ID=Phyra73191;Parent=Phyra73191;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 780669 781489 . - 0 ID=Phyra73191;Parent=Phyra73191;rank=4 scaffold_2 . exon 780669 781489 . - . ID=Phyra73191.4;Parent=Phyra73191;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 781613 781673 . - 0 ID=Phyra73191;Parent=Phyra73191;rank=3 scaffold_2 . exon 781613 781673 . - . ID=Phyra73191.3;Parent=Phyra73191;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 781776 782072 . - 0 ID=Phyra73191;Parent=Phyra73191;rank=2 scaffold_2 . exon 781776 782072 . - . ID=Phyra73191.2;Parent=Phyra73191;constitutive=1;rank=2 scaffold_2 . CDS 782508 783365 . - 0 ID=Phyra73191;Parent=Phyra73191;rank=1 scaffold_2 . exon 782508 783365 . - . ID=Phyra73191.1;Parent=Phyra73191;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 784606 786711 . + . ID=Phyra73192;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000257;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 784606 786711 . + . ID=Phyra73192;Parent=Phyra73192;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 784606 785523 . + 0 ID=Phyra73192;Parent=Phyra73192;rank=1 scaffold_2 . exon 784606 785523 . + . ID=Phyra73192.1;Parent=Phyra73192;constitutive=1;rank=1 scaffold_2 . CDS 785596 786711 . + 0 ID=Phyra73192;Parent=Phyra73192;rank=2 scaffold_2 . exon 785596 786711 . + . ID=Phyra73192.2;Parent=Phyra73192;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 787228 788355 . - . ID=Phyra73193;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000258;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 787228 788355 . - . ID=Phyra73193;Parent=Phyra73193;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 787228 788355 . - 0 ID=Phyra73193;Parent=Phyra73193;rank=1 scaffold_2 . exon 787228 788355 . - . ID=Phyra73193.1;Parent=Phyra73193;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 796342 798813 . + . ID=Phyra43952;biotype=protein_coding;external_name=gwEuk.2.203.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 796342 798813 . + . ID=Phyra43952;Parent=Phyra43952;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 796342 798813 . + 0 ID=Phyra43952;Parent=Phyra43952;rank=1 scaffold_2 . exon 796342 798813 . + . ID=Phyra43952.1;Parent=Phyra43952;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 789567 791027 . - . ID=Phyra73194;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000259;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 789567 791027 . - . ID=Phyra73194;Parent=Phyra73194;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 789567 789870 . - 0 ID=Phyra73194;Parent=Phyra73194;rank=6 scaffold_2 . exon 789567 789870 . - . ID=Phyra73194.6;Parent=Phyra73194;constitutive=1;ensembl_phase=2;rank=6 scaffold_2 . CDS 790145 790271 . - 0 ID=Phyra73194;Parent=Phyra73194;rank=5 scaffold_2 . exon 790145 790271 . - . ID=Phyra73194.5;Parent=Phyra73194;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_2 . CDS 790383 790507 . - 0 ID=Phyra73194;Parent=Phyra73194;rank=4 scaffold_2 . exon 790383 790507 . - . ID=Phyra73194.4;Parent=Phyra73194;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 790602 790686 . - 0 ID=Phyra73194;Parent=Phyra73194;rank=3 scaffold_2 . exon 790602 790686 . - . ID=Phyra73194.3;Parent=Phyra73194;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_2 . CDS 790814 790926 . - 0 ID=Phyra73194;Parent=Phyra73194;rank=2 scaffold_2 . exon 790814 790926 . - . ID=Phyra73194.2;Parent=Phyra73194;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 790996 791027 . - 0 ID=Phyra73194;Parent=Phyra73194;rank=1 scaffold_2 . exon 790996 791027 . - . ID=Phyra73194.1;Parent=Phyra73194;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 791260 793098 . + . ID=Phyra73195;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000260;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 791260 793098 . + . ID=Phyra73195;Parent=Phyra73195;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 791260 793098 . + 0 ID=Phyra73195;Parent=Phyra73195;rank=1 scaffold_2 . exon 791260 793098 . + . ID=Phyra73195.1;Parent=Phyra73195;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 793310 794445 . - . ID=Phyra73196;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000261;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 793310 794445 . - . ID=Phyra73196;Parent=Phyra73196;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 793310 794281 . - 0 ID=Phyra73196;Parent=Phyra73196;rank=2 scaffold_2 . exon 793310 794281 . - . ID=Phyra73196.2;Parent=Phyra73196;constitutive=1;rank=2 scaffold_2 . CDS 794404 794445 . - 0 ID=Phyra73196;Parent=Phyra73196;rank=1 scaffold_2 . exon 794404 794445 . - . ID=Phyra73196.1;Parent=Phyra73196;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 799131 801745 . - . ID=Phyra73199;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000264;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 799131 801745 . - . ID=Phyra73199;Parent=Phyra73199;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 799131 801555 . - 0 ID=Phyra73199;Parent=Phyra73199;rank=2 scaffold_2 . exon 799131 801555 . - . ID=Phyra73199.2;Parent=Phyra73199;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 801621 801745 . - 0 ID=Phyra73199;Parent=Phyra73199;rank=1 scaffold_2 ensembl protein_coding_gene 794663 795889 . + . ID=Phyra93531;biotype=protein_coding;external_name=C_scaffold_2000133;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 794663 795889 . + . ID=Phyra93531;Parent=Phyra93531;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 794663 794965 . + 0 ID=Phyra93531;Parent=Phyra93531;rank=1 scaffold_2 . exon 794663 794965 . + . ID=Phyra93531.1;Parent=Phyra93531;constitutive=1;rank=1 scaffold_2 . CDS 794993 795286 . + 0 ID=Phyra93531;Parent=Phyra93531;rank=2 scaffold_2 . exon 794993 795286 . + . ID=Phyra93531.2;Parent=Phyra93531;constitutive=1;rank=2 scaffold_2 . CDS 795367 795671 . + 0 ID=Phyra93531;Parent=Phyra93531;rank=3 scaffold_2 . exon 795367 795671 . + . ID=Phyra93531.3;Parent=Phyra93531;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 795748 795889 . + 0 ID=Phyra93531;Parent=Phyra93531;rank=4 scaffold_2 . exon 795748 795889 . + . ID=Phyra93531.4;Parent=Phyra93531;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . biological_region 801056 801061 0.999 - . logic_name=eponine scaffold_2 . biological_region 801605 801606 0.999 + . logic_name=eponine scaffold_2 . exon 801621 801745 . - . ID=Phyra73199.1;Parent=Phyra73199;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 805611 806889 . - . ID=Phyra73201;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000266;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 805611 806889 . - . ID=Phyra73201;Parent=Phyra73201;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 805611 805860 . - 0 ID=Phyra73201;Parent=Phyra73201;rank=5 scaffold_2 . exon 805611 805860 . - . ID=Phyra73201.5;Parent=Phyra73201;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 805937 806023 . - 0 ID=Phyra73201;Parent=Phyra73201;rank=4 scaffold_2 . exon 805937 806023 . - . ID=Phyra73201.4;Parent=Phyra73201;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_2 . CDS 806096 806148 . - 0 ID=Phyra73201;Parent=Phyra73201;rank=3 scaffold_2 . exon 806096 806148 . - . ID=Phyra73201.3;Parent=Phyra73201;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 806226 806645 . - 0 ID=Phyra73201;Parent=Phyra73201;rank=2 scaffold_2 . exon 806226 806645 . - . ID=Phyra73201.2;Parent=Phyra73201;constitutive=1;rank=2 scaffold_2 . CDS 806725 806889 . - 0 ID=Phyra73201;Parent=Phyra73201;rank=1 scaffold_2 . exon 806725 806889 . - . ID=Phyra73201.1;Parent=Phyra73201;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 802095 803055 . + . ID=Phyra93535;biotype=protein_coding;external_name=C_scaffold_2000137;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 802095 803055 . + . ID=Phyra93535;Parent=Phyra93535;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 802095 802162 . + 0 ID=Phyra93535;Parent=Phyra93535;rank=1 scaffold_2 . exon 802095 802162 . + . ID=Phyra93535.1;Parent=Phyra93535;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 802228 802310 . + 0 ID=Phyra93535;Parent=Phyra93535;rank=2 scaffold_2 . exon 802228 802310 . + . ID=Phyra93535.2;Parent=Phyra93535;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 802398 802447 . + 0 ID=Phyra93535;Parent=Phyra93535;rank=3 scaffold_2 . exon 802398 802447 . + . ID=Phyra93535.3;Parent=Phyra93535;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 802494 802598 . + 0 ID=Phyra93535;Parent=Phyra93535;rank=4 scaffold_2 . exon 802494 802598 . + . ID=Phyra93535.4;Parent=Phyra93535;constitutive=1;rank=4 scaffold_2 . CDS 802703 802792 . + 0 ID=Phyra93535;Parent=Phyra93535;rank=5 scaffold_2 . exon 802703 802792 . + . ID=Phyra93535.5;Parent=Phyra93535;constitutive=1;rank=5 scaffold_2 . CDS 802848 802925 . + 0 ID=Phyra93535;Parent=Phyra93535;rank=6 scaffold_2 . exon 802848 802925 . + . ID=Phyra93535.6;Parent=Phyra93535;constitutive=1;rank=6 scaffold_2 . CDS 803023 803055 . + 0 ID=Phyra93535;Parent=Phyra93535;rank=7 scaffold_2 . exon 803023 803055 . + . ID=Phyra93535.7;Parent=Phyra93535;constitutive=1;rank=7 scaffold_2 ensembl protein_coding_gene 803248 803900 . - . ID=Phyra93536;biotype=protein_coding;external_name=C_scaffold_2000138;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 803248 803900 . - . ID=Phyra93536;Parent=Phyra93536;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 803248 803431 . - 0 ID=Phyra93536;Parent=Phyra93536;rank=3 scaffold_2 . exon 803248 803431 . - . ID=Phyra93536.3;Parent=Phyra93536;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 803510 803658 . - 0 ID=Phyra93536;Parent=Phyra93536;rank=2 scaffold_2 . exon 803510 803658 . - . ID=Phyra93536.2;Parent=Phyra93536;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 803739 803900 . - 0 ID=Phyra93536;Parent=Phyra93536;rank=1 scaffold_2 . exon 803739 803900 . - . ID=Phyra93536.1;Parent=Phyra93536;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 804034 805478 . + . ID=Phyra93537;biotype=protein_coding;external_name=C_scaffold_2000139;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 804034 805478 . + . ID=Phyra93537;Parent=Phyra93537;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 804034 804095 . + 0 ID=Phyra93537;Parent=Phyra93537;rank=1 scaffold_2 . exon 804034 804095 . + . ID=Phyra93537.1;Parent=Phyra93537;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 804157 804259 . + 0 ID=Phyra93537;Parent=Phyra93537;rank=2 scaffold_2 . exon 804157 804259 . + . ID=Phyra93537.2;Parent=Phyra93537;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 804340 804564 . + 0 ID=Phyra93537;Parent=Phyra93537;rank=3 scaffold_2 . exon 804340 804564 . + . ID=Phyra93537.3;Parent=Phyra93537;constitutive=1;rank=3 scaffold_2 . CDS 804628 804683 . + 0 ID=Phyra93537;Parent=Phyra93537;rank=4 scaffold_2 . exon 804628 804683 . + . ID=Phyra93537.4;Parent=Phyra93537;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . CDS 804752 805050 . + 0 ID=Phyra93537;Parent=Phyra93537;rank=5 scaffold_2 . exon 804752 805050 . + . ID=Phyra93537.5;Parent=Phyra93537;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 805303 805428 . + 0 ID=Phyra93537;Parent=Phyra93537;rank=6 scaffold_2 . exon 805303 805428 . + . ID=Phyra93537.6;Parent=Phyra93537;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_2 . CDS 805471 805478 . + 0 ID=Phyra93537;Parent=Phyra93537;rank=7 scaffold_2 . exon 805471 805478 . + . ID=Phyra93537.7;Parent=Phyra93537;constitutive=1;ensembl_phase=1;rank=7 scaffold_2 ensembl protein_coding_gene 807257 809947 . + . ID=Phyra93540;biotype=protein_coding;external_name=C_scaffold_2000142;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 807257 809947 . + . ID=Phyra93540;Parent=Phyra93540;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 807257 808275 . + 0 ID=Phyra93540;Parent=Phyra93540;rank=1 scaffold_2 . exon 807257 808275 . + . ID=Phyra93540.1;Parent=Phyra93540;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 808375 808434 . + 0 ID=Phyra93540;Parent=Phyra93540;rank=2 scaffold_2 . exon 808375 808434 . + . ID=Phyra93540.2;Parent=Phyra93540;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 808873 809947 . + 0 ID=Phyra93540;Parent=Phyra93540;rank=3 scaffold_2 . exon 808873 809947 . + . ID=Phyra93540.3;Parent=Phyra93540;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . repeat_region 810529 810560 . ? . description=trf scaffold_2 . repeat_region 810535 810554 . ? . description=trf scaffold_2 . repeat_region 815926 815945 . ? . description=trf scaffold_2 ensembl protein_coding_gene 813701 814591 . + . ID=Phyra43963;biotype=protein_coding;external_name=gwEuk.2.214.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 813701 814591 . + . ID=Phyra43963;Parent=Phyra43963;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 813701 814591 . + 0 ID=Phyra43963;Parent=Phyra43963;rank=1 scaffold_2 . exon 813701 814591 . + . ID=Phyra43963.1;Parent=Phyra43963;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 814922 815464 . + . ID=Phyra73205;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000270;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 814922 815464 . + . ID=Phyra73205;Parent=Phyra73205;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 814922 815464 . + 0 ID=Phyra73205;Parent=Phyra73205;rank=1 scaffold_2 . exon 814922 815464 . + . ID=Phyra73205.1;Parent=Phyra73205;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 815844 818149 . + . ID=Phyra73206;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000271;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 815844 818149 . + . ID=Phyra73206;Parent=Phyra73206;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 815844 816894 . + 0 ID=Phyra73206;Parent=Phyra73206;rank=1 scaffold_2 . exon 815844 816894 . + . ID=Phyra73206.1;Parent=Phyra73206;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 816961 817109 . + 0 ID=Phyra73206;Parent=Phyra73206;rank=2 scaffold_2 . exon 816961 817109 . + . ID=Phyra73206.2;Parent=Phyra73206;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 817310 817351 . + 0 ID=Phyra73206;Parent=Phyra73206;rank=3 scaffold_2 . exon 817310 817351 . + . ID=Phyra73206.3;Parent=Phyra73206;constitutive=1;rank=3 scaffold_2 . CDS 817586 818149 . + 0 ID=Phyra73206;Parent=Phyra73206;rank=4 scaffold_2 . exon 817586 818149 . + . ID=Phyra73206.4;Parent=Phyra73206;constitutive=1;rank=4 scaffold_2 ensembl protein_coding_gene 810123 810683 . - . ID=Phyra93541;biotype=protein_coding;external_name=C_scaffold_2000143;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 810123 810683 . - . ID=Phyra93541;Parent=Phyra93541;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 810123 810146 . - 0 ID=Phyra93541;Parent=Phyra93541;rank=3 scaffold_2 . exon 810123 810146 . - . ID=Phyra93541.3;Parent=Phyra93541;constitutive=1;rank=3 scaffold_2 . CDS 810213 810317 . - 0 ID=Phyra93541;Parent=Phyra93541;rank=2 scaffold_2 . exon 810213 810317 . - . ID=Phyra93541.2;Parent=Phyra93541;constitutive=1;rank=2 scaffold_2 . CDS 810417 810683 . - 0 ID=Phyra93541;Parent=Phyra93541;rank=1 scaffold_2 . exon 810417 810683 . - . ID=Phyra93541.1;Parent=Phyra93541;constitutive=1;rank=1 scaffold_2 . repeat_region 822459 822466 . ? . description=dust scaffold_2 ensembl protein_coding_gene 821526 822433 . + . ID=Phyra43965;biotype=protein_coding;external_name=gwEuk.2.216.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 821526 822433 . + . ID=Phyra43965;Parent=Phyra43965;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 821526 821633 . + 0 ID=Phyra43965;Parent=Phyra43965;rank=1 scaffold_2 . exon 821526 821633 . + . ID=Phyra43965.1;Parent=Phyra43965;constitutive=1;rank=1 scaffold_2 . CDS 821694 821981 . + 0 ID=Phyra43965;Parent=Phyra43965;rank=2 scaffold_2 . exon 821694 821981 . + . ID=Phyra43965.2;Parent=Phyra43965;constitutive=1;rank=2 scaffold_2 . CDS 822047 822433 . + 0 ID=Phyra43965;Parent=Phyra43965;rank=3 scaffold_2 . exon 822047 822433 . + . ID=Phyra43965.3;Parent=Phyra43965;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 828183 832102 . - . ID=Phyra93542;biotype=protein_coding;external_name=C_scaffold_2000144;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 828183 832102 . - . ID=Phyra93542;Parent=Phyra93542;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 828183 828923 . - 0 ID=Phyra93542;Parent=Phyra93542;rank=6 scaffold_2 . exon 828183 828923 . - . ID=Phyra93542.6;Parent=Phyra93542;constitutive=1;rank=6 scaffold_2 . CDS 828945 829085 . - 0 ID=Phyra93542;Parent=Phyra93542;rank=5 scaffold_2 . exon 828945 829085 . - . ID=Phyra93542.5;Parent=Phyra93542;constitutive=1;rank=5 scaffold_2 . CDS 829305 829631 . - 0 ID=Phyra93542;Parent=Phyra93542;rank=4 scaffold_2 . exon 829305 829631 . - . ID=Phyra93542.4;Parent=Phyra93542;constitutive=1;rank=4 scaffold_2 . CDS 829656 830849 . - 0 ID=Phyra93542;Parent=Phyra93542;rank=3 scaffold_2 . CDS 831143 831317 . - 0 ID=Phyra93542;Parent=Phyra93542;rank=2 scaffold_2 . CDS 831342 832102 . - 0 ID=Phyra93542;Parent=Phyra93542;rank=1 scaffold_2 . biological_region 831799 831803 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 832527 834128 . + . ID=Phyra43972;biotype=protein_coding;external_name=gwEuk.2.223.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 832527 834128 . + . ID=Phyra43972;Parent=Phyra43972;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 832527 834128 . + 0 ID=Phyra43972;Parent=Phyra43972;rank=1 scaffold_2 . exon 832527 834128 . + . ID=Phyra43972.1;Parent=Phyra43972;constitutive=1;rank=1 scaffold_2 . exon 829656 830849 . - . ID=Phyra93542.3;Parent=Phyra93542;constitutive=1;rank=3 scaffold_2 . exon 831143 831317 . - . ID=Phyra93542.2;Parent=Phyra93542;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . exon 831342 832102 . - . ID=Phyra93542.1;Parent=Phyra93542;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 839997 841662 . - . ID=Phyra73210;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000275;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 839997 841662 . - . ID=Phyra73210;Parent=Phyra73210;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 839997 840192 . - 0 ID=Phyra73210;Parent=Phyra73210;rank=5 scaffold_2 . exon 839997 840192 . - . ID=Phyra73210.5;Parent=Phyra73210;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 840279 840892 . - 0 ID=Phyra73210;Parent=Phyra73210;rank=4 scaffold_2 . exon 840279 840892 . - . ID=Phyra73210.4;Parent=Phyra73210;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . CDS 840962 841330 . - 0 ID=Phyra73210;Parent=Phyra73210;rank=3 scaffold_2 . exon 840962 841330 . - . ID=Phyra73210.3;Parent=Phyra73210;constitutive=1;rank=3 scaffold_2 . CDS 841405 841526 . - 0 ID=Phyra73210;Parent=Phyra73210;rank=2 scaffold_2 . exon 841405 841526 . - . ID=Phyra73210.2;Parent=Phyra73210;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 841602 841662 . - 0 ID=Phyra73210;Parent=Phyra73210;rank=1 scaffold_2 . exon 841602 841662 . - . ID=Phyra73210.1;Parent=Phyra73210;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 843437 844418 . + . ID=Phyra93545;biotype=protein_coding;external_name=C_scaffold_2000147;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 843437 844418 . + . ID=Phyra93545;Parent=Phyra93545;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 843437 844309 . + 0 ID=Phyra93545;Parent=Phyra93545;rank=1 scaffold_2 . exon 843437 844309 . + . ID=Phyra93545.1;Parent=Phyra93545;constitutive=1;rank=1 scaffold_2 . CDS 844362 844418 . + 0 ID=Phyra93545;Parent=Phyra93545;rank=2 scaffold_2 . exon 844362 844418 . + . ID=Phyra93545.2;Parent=Phyra93545;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 844945 846519 . - . ID=Phyra93546;biotype=protein_coding;external_name=C_scaffold_2000148;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 844945 846519 . - . ID=Phyra93546;Parent=Phyra93546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 844945 845140 . - 0 ID=Phyra93546;Parent=Phyra93546;rank=4 scaffold_2 . exon 844945 845140 . - . ID=Phyra93546.4;Parent=Phyra93546;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 845212 846191 . - 0 ID=Phyra93546;Parent=Phyra93546;rank=3 scaffold_2 . exon 845212 846191 . - . ID=Phyra93546.3;Parent=Phyra93546;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 846268 846389 . - 0 ID=Phyra93546;Parent=Phyra93546;rank=2 scaffold_2 . exon 846268 846389 . - . ID=Phyra93546.2;Parent=Phyra93546;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 846456 846519 . - 0 ID=Phyra93546;Parent=Phyra93546;rank=1 scaffold_2 . exon 846456 846519 . - . ID=Phyra93546.1;Parent=Phyra93546;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . repeat_region 850806 850824 . ? . description=dust scaffold_2 . repeat_region 851896 851954 . ? . description=dust scaffold_2 . repeat_region 851920 851950 . ? . description=trf scaffold_2 . repeat_region 852059 852109 . ? . description=trf scaffold_2 . repeat_region 852060 852115 . ? . description=trf scaffold_2 . repeat_region 852063 852094 . ? . description=trf scaffold_2 . biological_region 852341 852347 0.999 - . logic_name=eponine scaffold_2 . biological_region 852354 852359 0.999 + . logic_name=eponine scaffold_2 . biological_region 852395 852399 0.999 + . logic_name=eponine scaffold_2 . repeat_region 852558 852594 . ? . description=trf scaffold_2 . repeat_region 854015 854084 . ? . description=trf scaffold_2 . repeat_region 854027 854093 . ? . description=trf scaffold_2 . biological_region 855398 855399 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 851294 852481 . - . ID=Phyra73213;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000278;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 851294 852481 . - . ID=Phyra73213;Parent=Phyra73213;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 851294 852481 . - 0 ID=Phyra73213;Parent=Phyra73213;rank=1 scaffold_2 . exon 851294 852481 . - . ID=Phyra73213.1;Parent=Phyra73213;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 853532 854542 . + . ID=Phyra73215;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000280;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 853532 854542 . + . ID=Phyra73215;Parent=Phyra73215;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 853532 854542 . + 0 ID=Phyra73215;Parent=Phyra73215;rank=1 scaffold_2 . exon 853532 854542 . + . ID=Phyra73215.1;Parent=Phyra73215;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 854983 855539 . - . ID=Phyra73216;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000281;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 854983 855539 . - . ID=Phyra73216;Parent=Phyra73216;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 854983 855061 . - 0 ID=Phyra73216;Parent=Phyra73216;rank=2 scaffold_2 . exon 854983 855061 . - . ID=Phyra73216.2;Parent=Phyra73216;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 855145 855539 . - 0 ID=Phyra73216;Parent=Phyra73216;rank=1 scaffold_2 . exon 855145 855539 . - . ID=Phyra73216.1;Parent=Phyra73216;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 859378 861102 . - . ID=Phyra73217;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000282;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 859378 861102 . - . ID=Phyra73217;Parent=Phyra73217;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 859378 861102 . - 0 ID=Phyra73217;Parent=Phyra73217;rank=1 scaffold_2 . exon 859378 861102 . - . ID=Phyra73217.1;Parent=Phyra73217;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 852605 853429 . - . ID=Phyra93549;biotype=protein_coding;external_name=C_scaffold_2000151;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 852605 853429 . - . ID=Phyra93549;Parent=Phyra93549;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 852605 852942 . - 0 ID=Phyra93549;Parent=Phyra93549;rank=3 scaffold_2 . exon 852605 852942 . - . ID=Phyra93549.3;Parent=Phyra93549;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 853041 853225 . - 0 ID=Phyra93549;Parent=Phyra93549;rank=2 scaffold_2 . exon 853041 853225 . - . ID=Phyra93549.2;Parent=Phyra93549;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 853344 853429 . - 0 ID=Phyra93549;Parent=Phyra93549;rank=1 scaffold_2 . exon 853344 853429 . - . ID=Phyra93549.1;Parent=Phyra93549;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 861424 862290 . - . ID=Phyra43978;biotype=protein_coding;external_name=gwEuk.2.229.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 861424 862290 . - . ID=Phyra43978;Parent=Phyra43978;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 861424 862290 . - 0 ID=Phyra43978;Parent=Phyra43978;rank=1 scaffold_2 . exon 861424 862290 . - . ID=Phyra43978.1;Parent=Phyra43978;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 864967 866719 . - . ID=Phyra71090;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000031;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 864967 866719 . - . ID=Phyra71090;Parent=Phyra71090;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 864967 865311 . - 0 ID=Phyra71090;Parent=Phyra71090;rank=4 scaffold_2 . exon 864967 865311 . - . ID=Phyra71090.4;Parent=Phyra71090;constitutive=1;rank=4 scaffold_2 . CDS 865395 865484 . - 0 ID=Phyra71090;Parent=Phyra71090;rank=3 scaffold_2 . exon 865395 865484 . - . ID=Phyra71090.3;Parent=Phyra71090;constitutive=1;rank=3 scaffold_2 . CDS 865557 866318 . - 0 ID=Phyra71090;Parent=Phyra71090;rank=2 scaffold_2 . exon 865557 866318 . - . ID=Phyra71090.2;Parent=Phyra71090;constitutive=1;rank=2 scaffold_2 . CDS 866384 866719 . - 0 ID=Phyra71090;Parent=Phyra71090;rank=1 scaffold_2 . exon 866384 866719 . - . ID=Phyra71090.1;Parent=Phyra71090;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 867209 870189 . - . ID=Phyra73221;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000286;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 867209 870189 . - . ID=Phyra73221;Parent=Phyra73221;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 867209 867514 . - 0 ID=Phyra73221;Parent=Phyra73221;rank=11 scaffold_2 . exon 867209 867514 . - . ID=Phyra73221.11;Parent=Phyra73221;constitutive=1;rank=11 scaffold_2 . CDS 867582 867674 . - 0 ID=Phyra73221;Parent=Phyra73221;rank=10 scaffold_2 . exon 867582 867674 . - . ID=Phyra73221.10;Parent=Phyra73221;constitutive=1;rank=10 scaffold_2 . CDS 867757 868493 . - 0 ID=Phyra73221;Parent=Phyra73221;rank=9 scaffold_2 . exon 867757 868493 . - . ID=Phyra73221.9;Parent=Phyra73221;constitutive=1;ensembl_phase=1;rank=9 scaffold_2 . CDS 868558 868633 . - 0 ID=Phyra73221;Parent=Phyra73221;rank=8 scaffold_2 . exon 868558 868633 . - . ID=Phyra73221.8;Parent=Phyra73221;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_2 . CDS 868699 868815 . - 0 ID=Phyra73221;Parent=Phyra73221;rank=7 scaffold_2 . exon 868699 868815 . - . ID=Phyra73221.7;Parent=Phyra73221;constitutive=1;rank=7 scaffold_2 . CDS 868878 869015 . - 0 ID=Phyra73221;Parent=Phyra73221;rank=6 scaffold_2 . exon 868878 869015 . - . ID=Phyra73221.6;Parent=Phyra73221;constitutive=1;rank=6 scaffold_2 . CDS 869133 869192 . - 0 ID=Phyra73221;Parent=Phyra73221;rank=5 scaffold_2 . exon 869133 869192 . - . ID=Phyra73221.5;Parent=Phyra73221;constitutive=1;rank=5 scaffold_2 . CDS 869303 869632 . - 0 ID=Phyra73221;Parent=Phyra73221;rank=4 scaffold_2 . exon 869303 869632 . - . ID=Phyra73221.4;Parent=Phyra73221;constitutive=1;rank=4 scaffold_2 . CDS 869702 869781 . - 0 ID=Phyra73221;Parent=Phyra73221;rank=3 scaffold_2 . CDS 869844 869985 . - 0 ID=Phyra73221;Parent=Phyra73221;rank=2 scaffold_2 . CDS 870085 870189 . - 0 ID=Phyra73221;Parent=Phyra73221;rank=1 scaffold_2 ensembl protein_coding_gene 862388 864873 . + . ID=Phyra93554;biotype=protein_coding;external_name=C_scaffold_2000156;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 862388 864873 . + . ID=Phyra93554;Parent=Phyra93554;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 862388 862542 . + 0 ID=Phyra93554;Parent=Phyra93554;rank=1 scaffold_2 . exon 862388 862542 . + . ID=Phyra93554.1;Parent=Phyra93554;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 862623 863526 . + 0 ID=Phyra93554;Parent=Phyra93554;rank=2 scaffold_2 . exon 862623 863526 . + . ID=Phyra93554.2;Parent=Phyra93554;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 863611 863947 . + 0 ID=Phyra93554;Parent=Phyra93554;rank=3 scaffold_2 . exon 863611 863947 . + . ID=Phyra93554.3;Parent=Phyra93554;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 864032 864286 . + 0 ID=Phyra93554;Parent=Phyra93554;rank=4 scaffold_2 . exon 864032 864286 . + . ID=Phyra93554.4;Parent=Phyra93554;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 864329 864471 . + 0 ID=Phyra93554;Parent=Phyra93554;rank=5 scaffold_2 . exon 864329 864471 . + . ID=Phyra93554.5;Parent=Phyra93554;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 864625 864731 . + 0 ID=Phyra93554;Parent=Phyra93554;rank=6 scaffold_2 . exon 864625 864731 . + . ID=Phyra93554.6;Parent=Phyra93554;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_2 . CDS 864807 864873 . + 0 ID=Phyra93554;Parent=Phyra93554;rank=7 scaffold_2 . exon 864807 864873 . + . ID=Phyra93554.7;Parent=Phyra93554;constitutive=1;ensembl_phase=2;rank=7 scaffold_2 . biological_region 870792 870798 0.999 - . logic_name=eponine scaffold_2 . biological_region 870914 870917 0.999 - . logic_name=eponine scaffold_2 . repeat_region 876060 876067 . ? . description=dust scaffold_2 . exon 869702 869781 . - . ID=Phyra73221.3;Parent=Phyra73221;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . exon 869844 869985 . - . ID=Phyra73221.2;Parent=Phyra73221;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . exon 870085 870189 . - . ID=Phyra73221.1;Parent=Phyra73221;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 870530 872216 . + . ID=Phyra73222;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000287;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 870530 872216 . + . ID=Phyra73222;Parent=Phyra73222;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 870530 871729 . + 0 ID=Phyra73222;Parent=Phyra73222;rank=1 scaffold_2 . exon 870530 871729 . + . ID=Phyra73222.1;Parent=Phyra73222;constitutive=1;rank=1 scaffold_2 . CDS 871816 871977 . + 0 ID=Phyra73222;Parent=Phyra73222;rank=2 scaffold_2 . exon 871816 871977 . + . ID=Phyra73222.2;Parent=Phyra73222;constitutive=1;rank=2 scaffold_2 . CDS 872055 872216 . + 0 ID=Phyra73222;Parent=Phyra73222;rank=3 scaffold_2 . exon 872055 872216 . + . ID=Phyra73222.3;Parent=Phyra73222;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 878922 881369 . - . ID=Phyra73223;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000288;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 878922 881369 . - . ID=Phyra73223;Parent=Phyra73223;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 878922 881369 . - 0 ID=Phyra73223;Parent=Phyra73223;rank=1 scaffold_2 . exon 878922 881369 . - . ID=Phyra73223.1;Parent=Phyra73223;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 882192 884900 . + . ID=Phyra73224;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000289;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 882192 884900 . + . ID=Phyra73224;Parent=Phyra73224;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 882192 884900 . + 0 ID=Phyra73224;Parent=Phyra73224;rank=1 scaffold_2 . exon 882192 884900 . + . ID=Phyra73224.1;Parent=Phyra73224;constitutive=1;rank=1 scaffold_2 . biological_region 889502 889504 0.999 - . logic_name=eponine scaffold_2 . biological_region 890126 890129 0.999 - . logic_name=eponine scaffold_2 . biological_region 890129 890132 0.999 + . logic_name=eponine scaffold_2 . biological_region 890149 890153 0.999 + . logic_name=eponine scaffold_2 . biological_region 890195 890198 0.999 - . logic_name=eponine scaffold_2 . biological_region 890205 890205 0.999 + . logic_name=eponine scaffold_2 . biological_region 891005 891009 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 889896 891089 . + . ID=Phyra73225;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000290;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 889896 891089 . + . ID=Phyra73225;Parent=Phyra73225;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 889896 891089 . + 0 ID=Phyra73225;Parent=Phyra73225;rank=1 scaffold_2 . exon 889896 891089 . + . ID=Phyra73225.1;Parent=Phyra73225;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 891808 893165 . - . ID=Phyra73226;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000291;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 891808 893165 . - . ID=Phyra73226;Parent=Phyra73226;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 891808 892006 . - 0 ID=Phyra73226;Parent=Phyra73226;rank=6 scaffold_2 . exon 891808 892006 . - . ID=Phyra73226.6;Parent=Phyra73226;constitutive=1;ensembl_phase=2;rank=6 scaffold_2 . CDS 892077 892313 . - 0 ID=Phyra73226;Parent=Phyra73226;rank=5 scaffold_2 . exon 892077 892313 . - . ID=Phyra73226.5;Parent=Phyra73226;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_2 . CDS 892388 892630 . - 0 ID=Phyra73226;Parent=Phyra73226;rank=4 scaffold_2 . exon 892388 892630 . - . ID=Phyra73226.4;Parent=Phyra73226;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_2 . CDS 892702 892783 . - 0 ID=Phyra73226;Parent=Phyra73226;rank=3 scaffold_2 . exon 892702 892783 . - . ID=Phyra73226.3;Parent=Phyra73226;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_2 . CDS 892852 892954 . - 0 ID=Phyra73226;Parent=Phyra73226;rank=2 scaffold_2 . exon 892852 892954 . - . ID=Phyra73226.2;Parent=Phyra73226;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 893022 893165 . - 0 ID=Phyra73226;Parent=Phyra73226;rank=1 scaffold_2 . exon 893022 893165 . - . ID=Phyra73226.1;Parent=Phyra73226;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 893392 896465 . + . ID=Phyra73227;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000292;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 893392 896465 . + . ID=Phyra73227;Parent=Phyra73227;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 893392 893904 . + 0 ID=Phyra73227;Parent=Phyra73227;rank=1 scaffold_2 . exon 893392 893904 . + . ID=Phyra73227.1;Parent=Phyra73227;constitutive=1;rank=1 scaffold_2 . CDS 893977 894385 . + 0 ID=Phyra73227;Parent=Phyra73227;rank=2 scaffold_2 . exon 893977 894385 . + . ID=Phyra73227.2;Parent=Phyra73227;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 894462 895307 . + 0 ID=Phyra73227;Parent=Phyra73227;rank=3 scaffold_2 . exon 894462 895307 . + . ID=Phyra73227.3;Parent=Phyra73227;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 895440 895694 . + 0 ID=Phyra73227;Parent=Phyra73227;rank=4 scaffold_2 . exon 895440 895694 . + . ID=Phyra73227.4;Parent=Phyra73227;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 895775 895884 . + 0 ID=Phyra73227;Parent=Phyra73227;rank=5 scaffold_2 . exon 895775 895884 . + . ID=Phyra73227.5;Parent=Phyra73227;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 896190 896465 . + 0 ID=Phyra73227;Parent=Phyra73227;rank=6 scaffold_2 . exon 896190 896465 . + . ID=Phyra73227.6;Parent=Phyra73227;constitutive=1;rank=6 scaffold_2 ensembl protein_coding_gene 896642 900400 . - . ID=Phyra73228;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000293;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 896642 900400 . - . ID=Phyra73228;Parent=Phyra73228;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 896642 896927 . - 0 ID=Phyra73228;Parent=Phyra73228;rank=2 scaffold_2 . exon 896642 896927 . - . ID=Phyra73228.2;Parent=Phyra73228;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 897012 900400 . - 0 ID=Phyra73228;Parent=Phyra73228;rank=1 scaffold_2 . exon 897012 900400 . - . ID=Phyra73228.1;Parent=Phyra73228;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . repeat_region 901768 901778 . ? . description=dust scaffold_2 . repeat_region 904947 904994 . ? . description=dust scaffold_2 . repeat_region 904961 904992 . ? . description=trf scaffold_2 ensembl protein_coding_gene 902030 903136 . + . ID=Phyra71091;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_2000032;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 902030 903136 . + . ID=Phyra71091;Parent=Phyra71091;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 902030 903136 . + 0 ID=Phyra71091;Parent=Phyra71091;rank=1 scaffold_2 . exon 902030 903136 . + . ID=Phyra71091.1;Parent=Phyra71091;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 901225 901589 . + . ID=Phyra73229;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000294;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 901225 901589 . + . ID=Phyra73229;Parent=Phyra73229;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 901225 901462 . + 0 ID=Phyra73229;Parent=Phyra73229;rank=1 scaffold_2 . exon 901225 901462 . + . ID=Phyra73229.1;Parent=Phyra73229;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 901489 901589 . + 0 ID=Phyra73229;Parent=Phyra73229;rank=2 scaffold_2 . exon 901489 901589 . + . ID=Phyra73229.2;Parent=Phyra73229;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 ensembl protein_coding_gene 903250 908627 . - . ID=Phyra93557;biotype=protein_coding;external_name=C_scaffold_2000159;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 903250 908627 . - . ID=Phyra93557;Parent=Phyra93557;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 903250 903512 . - 0 ID=Phyra93557;Parent=Phyra93557;rank=14 scaffold_2 . exon 903250 903512 . - . ID=Phyra93557.14;Parent=Phyra93557;constitutive=1;ensembl_phase=1;rank=14 scaffold_2 . CDS 903585 904811 . - 0 ID=Phyra93557;Parent=Phyra93557;rank=13 scaffold_2 . exon 903585 904811 . - . ID=Phyra93557.13;Parent=Phyra93557;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_2 . CDS 904959 905006 . - 0 ID=Phyra93557;Parent=Phyra93557;rank=12 scaffold_2 . exon 904959 905006 . - . ID=Phyra93557.12;Parent=Phyra93557;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_2 . CDS 905055 905725 . - 0 ID=Phyra93557;Parent=Phyra93557;rank=11 scaffold_2 . exon 905055 905725 . - . ID=Phyra93557.11;Parent=Phyra93557;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_2 . CDS 905801 905994 . - 0 ID=Phyra93557;Parent=Phyra93557;rank=10 scaffold_2 . exon 905801 905994 . - . ID=Phyra93557.10;Parent=Phyra93557;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_2 . CDS 906043 906678 . - 0 ID=Phyra93557;Parent=Phyra93557;rank=9 scaffold_2 . exon 906043 906678 . - . ID=Phyra93557.9;Parent=Phyra93557;constitutive=1;rank=9 scaffold_2 . CDS 906919 907094 . - 0 ID=Phyra93557;Parent=Phyra93557;rank=8 scaffold_2 . exon 906919 907094 . - . ID=Phyra93557.8;Parent=Phyra93557;constitutive=1;ensembl_phase=1;rank=8 scaffold_2 . CDS 907260 907355 . - 0 ID=Phyra93557;Parent=Phyra93557;rank=7 scaffold_2 . exon 907260 907355 . - . ID=Phyra93557.7;Parent=Phyra93557;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_2 . CDS 907512 907612 . - 0 ID=Phyra93557;Parent=Phyra93557;rank=6 scaffold_2 . exon 907512 907612 . - . ID=Phyra93557.6;Parent=Phyra93557;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_2 . CDS 907802 907892 . - 0 ID=Phyra93557;Parent=Phyra93557;rank=5 scaffold_2 . exon 907802 907892 . - . ID=Phyra93557.5;Parent=Phyra93557;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_2 . CDS 908085 908221 . - 0 ID=Phyra93557;Parent=Phyra93557;rank=4 scaffold_2 . exon 908085 908221 . - . ID=Phyra93557.4;Parent=Phyra93557;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 908249 908348 . - 0 ID=Phyra93557;Parent=Phyra93557;rank=3 scaffold_2 . exon 908249 908348 . - . ID=Phyra93557.3;Parent=Phyra93557;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_2 . CDS 908370 908492 . - 0 ID=Phyra93557;Parent=Phyra93557;rank=2 scaffold_2 . exon 908370 908492 . - . ID=Phyra93557.2;Parent=Phyra93557;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 908552 908627 . - 0 ID=Phyra93557;Parent=Phyra93557;rank=1 scaffold_2 . exon 908552 908627 . - . ID=Phyra93557.1;Parent=Phyra93557;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 929143 929900 . - . ID=Phyra73232;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000297;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 929143 929900 . - . ID=Phyra73232;Parent=Phyra73232;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 929143 929186 . - 0 ID=Phyra73232;Parent=Phyra73232;rank=2 scaffold_2 . exon 929143 929186 . - . ID=Phyra73232.2;Parent=Phyra73232;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 929219 929900 . - 0 ID=Phyra73232;Parent=Phyra73232;rank=1 scaffold_2 . exon 929219 929900 . - . ID=Phyra73232.1;Parent=Phyra73232;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . biological_region 929712 929712 0.999 - . logic_name=eponine scaffold_2 . repeat_region 930162 930184 . ? . description=dust scaffold_2 . repeat_region 930301 930361 . ? . description=dust scaffold_2 . repeat_region 930331 930359 . ? . description=trf scaffold_2 . biological_region 934168 934169 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 930135 934972 . + . ID=Phyra73233;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000298;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 930135 934972 . + . ID=Phyra73233;Parent=Phyra73233;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 930135 930150 . + 0 ID=Phyra73233;Parent=Phyra73233;rank=1 scaffold_2 . exon 930135 930150 . + . ID=Phyra73233.1;Parent=Phyra73233;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 930235 930398 . + 0 ID=Phyra73233;Parent=Phyra73233;rank=2 scaffold_2 . exon 930235 930398 . + . ID=Phyra73233.2;Parent=Phyra73233;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 930463 930634 . + 0 ID=Phyra73233;Parent=Phyra73233;rank=3 scaffold_2 . exon 930463 930634 . + . ID=Phyra73233.3;Parent=Phyra73233;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 930717 934972 . + 0 ID=Phyra73233;Parent=Phyra73233;rank=4 scaffold_2 . exon 930717 934972 . + . ID=Phyra73233.4;Parent=Phyra73233;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 ensembl protein_coding_gene 936240 937235 . + . ID=Phyra73234;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000299;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 936240 937235 . + . ID=Phyra73234;Parent=Phyra73234;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 936240 937235 . + 0 ID=Phyra73234;Parent=Phyra73234;rank=1 scaffold_2 . exon 936240 937235 . + . ID=Phyra73234.1;Parent=Phyra73234;constitutive=1;rank=1 scaffold_2 . repeat_region 946242 955718 . ? . description=dust scaffold_2 . repeat_region 957087 957136 . ? . description=dust scaffold_2 . repeat_region 958160 960065 . ? . description=dust scaffold_2 ensembl protein_coding_gene 956243 957912 . - . ID=Phyra73235;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000300;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 956243 957912 . - . ID=Phyra73235;Parent=Phyra73235;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 956243 956598 . - 0 ID=Phyra73235;Parent=Phyra73235;rank=2 scaffold_2 . exon 956243 956598 . - . ID=Phyra73235.2;Parent=Phyra73235;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 957273 957912 . - 0 ID=Phyra73235;Parent=Phyra73235;rank=1 scaffold_2 . exon 957273 957912 . - . ID=Phyra73235.1;Parent=Phyra73235;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 966752 966982 . + . ID=Phyra43991;biotype=protein_coding;external_name=gwEuk.2.242.1;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 966752 966982 . + . ID=Phyra43991;Parent=Phyra43991;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 966752 966982 . + 0 ID=Phyra43991;Parent=Phyra43991;rank=1 scaffold_2 . exon 966752 966982 . + . ID=Phyra43991.1;Parent=Phyra43991;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 960225 961247 . - . ID=Phyra73236;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000301;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 960225 961247 . - . ID=Phyra73236;Parent=Phyra73236;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 960225 961247 . - 0 ID=Phyra73236;Parent=Phyra73236;rank=1 scaffold_2 . exon 960225 961247 . - . ID=Phyra73236.1;Parent=Phyra73236;constitutive=1;rank=1 scaffold_2 . repeat_region 970574 975272 . ? . description=dust scaffold_2 . biological_region 975913 975915 0.999 - . logic_name=eponine scaffold_2 . biological_region 976559 976560 0.999 - . logic_name=eponine scaffold_2 . biological_region 976611 976616 0.999 - . logic_name=eponine scaffold_2 . biological_region 976714 976717 0.999 - . logic_name=eponine scaffold_2 . biological_region 976765 976768 0.999 - . logic_name=eponine scaffold_2 . repeat_region 977668 977717 . ? . description=dust scaffold_2 . repeat_region 986602 986659 . ? . description=trf scaffold_2 . repeat_region 986611 986664 . ? . description=trf scaffold_2 . repeat_region 986611 986682 . ? . description=trf scaffold_2 . repeat_region 986775 986822 . ? . description=trf scaffold_2 ensembl protein_coding_gene 980609 983041 . + . ID=Phyra73237;biotype=protein_coding;description=STIP [Source:UniProtKB/TrEMBL%3BAcc:A1XDC2];external_name=fgenesh1_pg.C_scaffold_2000302;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 980609 983041 . + . ID=Phyra73237;Parent=Phyra73237;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 980609 983041 . + 0 ID=Phyra73237;Parent=Phyra73237;rank=1 scaffold_2 . exon 980609 983041 . + . ID=Phyra73237.1;Parent=Phyra73237;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 983723 986461 . - . ID=Phyra73238;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000303;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 983723 986461 . - . ID=Phyra73238;Parent=Phyra73238;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 983723 983882 . - 0 ID=Phyra73238;Parent=Phyra73238;rank=3 scaffold_2 . exon 983723 983882 . - . ID=Phyra73238.3;Parent=Phyra73238;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 983972 986348 . - 0 ID=Phyra73238;Parent=Phyra73238;rank=2 scaffold_2 . exon 983972 986348 . - . ID=Phyra73238.2;Parent=Phyra73238;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 986422 986461 . - 0 ID=Phyra73238;Parent=Phyra73238;rank=1 scaffold_2 . exon 986422 986461 . - . ID=Phyra73238.1;Parent=Phyra73238;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 986885 988530 . - . ID=Phyra93561;biotype=protein_coding;external_name=C_scaffold_2000163;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 986885 988530 . - . ID=Phyra93561;Parent=Phyra93561;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 986885 987139 . - 0 ID=Phyra93561;Parent=Phyra93561;rank=5 scaffold_2 . exon 986885 987139 . - . ID=Phyra93561.5;Parent=Phyra93561;constitutive=1;rank=5 scaffold_2 . CDS 987179 987760 . - 0 ID=Phyra93561;Parent=Phyra93561;rank=4 scaffold_2 . exon 987179 987760 . - . ID=Phyra93561.4;Parent=Phyra93561;constitutive=1;rank=4 scaffold_2 . CDS 987797 987942 . - 0 ID=Phyra93561;Parent=Phyra93561;rank=3 scaffold_2 . exon 987797 987942 . - . ID=Phyra93561.3;Parent=Phyra93561;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 987964 988266 . - 0 ID=Phyra93561;Parent=Phyra93561;rank=2 scaffold_2 . exon 987964 988266 . - . ID=Phyra93561.2;Parent=Phyra93561;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 988332 988530 . - 0 ID=Phyra93561;Parent=Phyra93561;rank=1 scaffold_2 . exon 988332 988530 . - . ID=Phyra93561.1;Parent=Phyra93561;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 998981 999895 . - . ID=Phyra73240;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000305;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 998981 999895 . - . ID=Phyra73240;Parent=Phyra73240;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 998981 999214 . - 0 ID=Phyra73240;Parent=Phyra73240;rank=3 scaffold_2 . exon 998981 999214 . - . ID=Phyra73240.3;Parent=Phyra73240;constitutive=1;rank=3 scaffold_2 . CDS 999290 999412 . - 0 ID=Phyra73240;Parent=Phyra73240;rank=2 scaffold_2 . exon 999290 999412 . - . ID=Phyra73240.2;Parent=Phyra73240;constitutive=1;rank=2 scaffold_2 . CDS 999563 999895 . - 0 ID=Phyra73240;Parent=Phyra73240;rank=1 scaffold_2 . repeat_region 1001052 1001067 . ? . description=dust scaffold_2 . biological_region 1002187 1002188 0.999 - . logic_name=eponine scaffold_2 . biological_region 1002433 1002434 0.999 + . logic_name=eponine scaffold_2 . biological_region 1002451 1002457 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1004862 1017043 . ? . description=dust scaffold_2 . exon 999563 999895 . - . ID=Phyra73240.1;Parent=Phyra73240;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1002412 1004071 . + . ID=Phyra73241;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000306;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 1002412 1004071 . + . ID=Phyra73241;Parent=Phyra73241;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 1002412 1002639 . + 0 ID=Phyra73241;Parent=Phyra73241;rank=1 scaffold_2 . exon 1002412 1002639 . + . ID=Phyra73241.1;Parent=Phyra73241;constitutive=1;rank=1 scaffold_2 . CDS 1002713 1004071 . + 0 ID=Phyra73241;Parent=Phyra73241;rank=2 scaffold_2 . exon 1002713 1004071 . + . ID=Phyra73241.2;Parent=Phyra73241;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 1017105 1018192 . - . ID=Phyra73242;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000307;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 1017105 1018192 . - . ID=Phyra73242;Parent=Phyra73242;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 1017105 1017146 . - 0 ID=Phyra73242;Parent=Phyra73242;rank=2 scaffold_2 . exon 1017105 1017146 . - . ID=Phyra73242.2;Parent=Phyra73242;constitutive=1;rank=2 scaffold_2 . CDS 1017254 1018192 . - 0 ID=Phyra73242;Parent=Phyra73242;rank=1 scaffold_2 . exon 1017254 1018192 . - . ID=Phyra73242.1;Parent=Phyra73242;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1018290 1019269 . + . ID=Phyra73243;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_2000308;logic_name=jgi_phyra1 scaffold_2 ensembl transcript 1018290 1019269 . + . ID=Phyra73243;Parent=Phyra73243;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_2 . CDS 1018290 1018580 . + 0 ID=Phyra73243;Parent=Phyra73243;rank=1 scaffold_2 . exon 1018290 1018580 . + . ID=Phyra73243.1;Parent=Phyra73243;constitutive=1;rank=1 scaffold_2 . CDS 1018640 1018787 . + 0 ID=Phyra73243;Parent=Phyra73243;rank=2 scaffold_2 . exon 1018640 1018787 . + . ID=Phyra73243.2;Parent=Phyra73243;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 1018866 1019269 . + 0 ID=Phyra73243;Parent=Phyra73243;rank=3 scaffold_2 . exon 1018866 1019269 . + . ID=Phyra73243.3;Parent=Phyra73243;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1 1 1244001 scaffold_1 . repeat_region 1 287 . ? . description=dust scaffold_1 . repeat_region 1 289 . ? . description=trf scaffold_1 . repeat_region 830 7162 . ? . description=dust scaffold_1 . repeat_region 7163 7810 . ? . description=trf scaffold_1 . repeat_region 9163 35123 . ? . description=dust scaffold_1 ensembl tRNA_gene 8693 8764 . - . ID=EPrPRAG00000000019;biotype=tRNA;description=tRNA-His for anticodon GUG [Source:TRNASCAN_SE%3BAcc:tRNA-His];external_name=tRNA-His;logic_name=ncrna_eg scaffold_1 ensembl transcript 8693 8764 . - . ID=EPrPRAT00000000019;Parent=EPrPRAG00000000019;biotype=tRNA;logic_name=ncrna_eg scaffold_1 ensembl tRNA_gene 8766 8838 . - . ID=EPrPRAG00000000117;biotype=tRNA;description=tRNA-Ala for anticodon CGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_1 ensembl transcript 8766 8838 . - . ID=EPrPRAT00000000117;Parent=EPrPRAG00000000117;biotype=tRNA;logic_name=ncrna_eg scaffold_1 . exon 8693 8764 . - . ID=EPrPRAE00000000019;Parent=EPrPRAT00000000019;constitutive=1;rank=1 scaffold_1 . exon 8766 8838 . - . ID=EPrPRAE00000000117;Parent=EPrPRAT00000000117;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . repeat_region 9163 35123 . ? . description=dust scaffold_1 . repeat_region 36226 36250 . ? . description=trf scaffold_1 . repeat_region 36856 36886 . ? . description=trf scaffold_1 . repeat_region 39179 39257 . - . description=GypsyPi-1c_LTR scaffold_1 . repeat_region 39751 41322 . - . description=GypsyPi-1c_I-int scaffold_1 ensembl tRNA_gene 36287 36359 . - . ID=EPrPRAG00000000047;biotype=tRNA;description=tRNA-Ala for anticodon CGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_1 ensembl transcript 36287 36359 . - . ID=EPrPRAT00000000047;Parent=EPrPRAG00000000047;biotype=tRNA;logic_name=ncrna_eg scaffold_1 . exon 36287 36359 . - . ID=EPrPRAE00000000047;Parent=EPrPRAT00000000047;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . biological_region 40382 40385 0.999 - . logic_name=eponine scaffold_1 . biological_region 43408 43408 0.999 + . logic_name=eponine scaffold_1 . biological_region 44853 44856 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 40270 41235 . - . ID=Phyra72559;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000001;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 40270 41235 . - . ID=Phyra72559;Parent=Phyra72559;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 40270 41235 . - 0 ID=Phyra72559;Parent=Phyra72559;rank=1 scaffold_1 . exon 40270 41235 . - . ID=Phyra72559.1;Parent=Phyra72559;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 44741 45706 . - . ID=Phyra72560;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000002;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 44741 45706 . - . ID=Phyra72560;Parent=Phyra72560;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 44741 45706 . - 0 ID=Phyra72560;Parent=Phyra72560;rank=1 scaffold_1 . exon 44741 45706 . - . ID=Phyra72560.1;Parent=Phyra72560;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 46651 49431 . + . ID=Phyra72561;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000003;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 46651 49431 . + . ID=Phyra72561;Parent=Phyra72561;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 46651 47463 . + 0 ID=Phyra72561;Parent=Phyra72561;rank=1 scaffold_1 . exon 46651 47463 . + . ID=Phyra72561.1;Parent=Phyra72561;constitutive=1;rank=1 scaffold_1 . CDS 47587 47713 . + 0 ID=Phyra72561;Parent=Phyra72561;rank=2 scaffold_1 . exon 47587 47713 . + . ID=Phyra72561.2;Parent=Phyra72561;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 47894 49431 . + 0 ID=Phyra72561;Parent=Phyra72561;rank=3 scaffold_1 . exon 47894 49431 . + . ID=Phyra72561.3;Parent=Phyra72561;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . repeat_region 51683 51690 . ? . description=dust scaffold_1 . repeat_region 51903 51936 . ? . description=dust scaffold_1 . repeat_region 54468 54492 . ? . description=trf scaffold_1 . repeat_region 57396 57409 . ? . description=dust scaffold_1 . repeat_region 57506 57526 . ? . description=dust scaffold_1 ensembl protein_coding_gene 51790 52299 . + . ID=Phyra72562;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000004;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 51790 52299 . + . ID=Phyra72562;Parent=Phyra72562;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 51790 52299 . + 0 ID=Phyra72562;Parent=Phyra72562;rank=1 scaffold_1 . exon 51790 52299 . + . ID=Phyra72562.1;Parent=Phyra72562;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 52454 54415 . - . ID=Phyra72563;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000005;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 52454 54415 . - . ID=Phyra72563;Parent=Phyra72563;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 52454 54006 . - 0 ID=Phyra72563;Parent=Phyra72563;rank=2 scaffold_1 . exon 52454 54006 . - . ID=Phyra72563.2;Parent=Phyra72563;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 54079 54415 . - 0 ID=Phyra72563;Parent=Phyra72563;rank=1 scaffold_1 . exon 54079 54415 . - . ID=Phyra72563.1;Parent=Phyra72563;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . biological_region 61079 61083 0.999 + . logic_name=eponine scaffold_1 . biological_region 61173 61179 0.999 - . logic_name=eponine scaffold_1 . biological_region 61193 61199 0.999 - . logic_name=eponine scaffold_1 . biological_region 62219 62220 0.999 + . logic_name=eponine scaffold_1 . biological_region 62248 62250 0.999 + . logic_name=eponine scaffold_1 . biological_region 62293 62296 0.999 + . logic_name=eponine scaffold_1 . biological_region 66161 66165 0.999 + . logic_name=eponine scaffold_1 . biological_region 66184 66189 0.999 - . logic_name=eponine scaffold_1 . biological_region 66531 66536 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 59798 61274 . - . ID=Phyra71021;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000001;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 59798 61274 . - . ID=Phyra71021;Parent=Phyra71021;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 59798 60613 . - 0 ID=Phyra71021;Parent=Phyra71021;rank=3 scaffold_1 . exon 59798 60613 . - . ID=Phyra71021.3;Parent=Phyra71021;constitutive=1;rank=3 scaffold_1 . CDS 60690 61226 . - 0 ID=Phyra71021;Parent=Phyra71021;rank=2 scaffold_1 . exon 60690 61226 . - . ID=Phyra71021.2;Parent=Phyra71021;constitutive=1;rank=2 scaffold_1 . CDS 61254 61274 . - 0 ID=Phyra71021;Parent=Phyra71021;rank=1 scaffold_1 . exon 61254 61274 . - . ID=Phyra71021.1;Parent=Phyra71021;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 62160 63274 . + . ID=Phyra71022;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000002;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 62160 63274 . + . ID=Phyra71022;Parent=Phyra71022;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 62160 63218 . + 0 ID=Phyra71022;Parent=Phyra71022;rank=1 scaffold_1 . exon 62160 63218 . + . ID=Phyra71022.1;Parent=Phyra71022;constitutive=1;rank=1 scaffold_1 . CDS 63242 63274 . + 0 ID=Phyra71022;Parent=Phyra71022;rank=2 scaffold_1 . exon 63242 63274 . + . ID=Phyra71022.2;Parent=Phyra71022;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 64791 65666 . + . ID=Phyra72566;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000008;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 64791 65666 . + . ID=Phyra72566;Parent=Phyra72566;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 64791 65666 . + 0 ID=Phyra72566;Parent=Phyra72566;rank=1 scaffold_1 . exon 64791 65666 . + . ID=Phyra72566.1;Parent=Phyra72566;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 67574 71099 . + . ID=Phyra72568;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000010;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 67574 71099 . + . ID=Phyra72568;Parent=Phyra72568;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 67574 69572 . + 0 ID=Phyra72568;Parent=Phyra72568;rank=1 scaffold_1 . exon 67574 69572 . + . ID=Phyra72568.1;Parent=Phyra72568;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 69632 69740 . + 0 ID=Phyra72568;Parent=Phyra72568;rank=2 scaffold_1 . exon 69632 69740 . + . ID=Phyra72568.2;Parent=Phyra72568;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 69813 70465 . + 0 ID=Phyra72568;Parent=Phyra72568;rank=3 scaffold_1 . CDS 70543 70634 . + 0 ID=Phyra72568;Parent=Phyra72568;rank=4 scaffold_1 . CDS 70728 71099 . + 0 ID=Phyra72568;Parent=Phyra72568;rank=5 scaffold_1 ensembl protein_coding_gene 66230 66625 . - . ID=Phyra93226;biotype=protein_coding;external_name=C_scaffold_1000003;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 66230 66625 . - . ID=Phyra93226;Parent=Phyra93226;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 66230 66625 . - 0 ID=Phyra93226;Parent=Phyra93226;rank=1 scaffold_1 . exon 66230 66625 . - . ID=Phyra93226.1;Parent=Phyra93226;constitutive=1;rank=1 scaffold_1 . repeat_region 74075 74096 . ? . description=trf scaffold_1 . exon 69813 70465 . + . ID=Phyra72568.3;Parent=Phyra72568;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . exon 70543 70634 . + . ID=Phyra72568.4;Parent=Phyra72568;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . exon 70728 71099 . + . ID=Phyra72568.5;Parent=Phyra72568;constitutive=1;rank=5 scaffold_1 ensembl protein_coding_gene 72154 73628 . - . ID=Phyra72569;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000011;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 72154 73628 . - . ID=Phyra72569;Parent=Phyra72569;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 72154 72170 . - 0 ID=Phyra72569;Parent=Phyra72569;rank=7 scaffold_1 . exon 72154 72170 . - . ID=Phyra72569.7;Parent=Phyra72569;constitutive=1;ensembl_phase=1;rank=7 scaffold_1 . CDS 72277 72306 . - 0 ID=Phyra72569;Parent=Phyra72569;rank=6 scaffold_1 . exon 72277 72306 . - . ID=Phyra72569.6;Parent=Phyra72569;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 72379 72898 . - 0 ID=Phyra72569;Parent=Phyra72569;rank=5 scaffold_1 . exon 72379 72898 . - . ID=Phyra72569.5;Parent=Phyra72569;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . CDS 72961 73108 . - 0 ID=Phyra72569;Parent=Phyra72569;rank=4 scaffold_1 . exon 72961 73108 . - . ID=Phyra72569.4;Parent=Phyra72569;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 73187 73335 . - 0 ID=Phyra72569;Parent=Phyra72569;rank=3 scaffold_1 . exon 73187 73335 . - . ID=Phyra72569.3;Parent=Phyra72569;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 73403 73471 . - 0 ID=Phyra72569;Parent=Phyra72569;rank=2 scaffold_1 . exon 73403 73471 . - . ID=Phyra72569.2;Parent=Phyra72569;constitutive=1;rank=2 scaffold_1 . CDS 73545 73628 . - 0 ID=Phyra72569;Parent=Phyra72569;rank=1 scaffold_1 . exon 73545 73628 . - . ID=Phyra72569.1;Parent=Phyra72569;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 74411 76350 . - . ID=Phyra72570;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000012;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 74411 76350 . - . ID=Phyra72570;Parent=Phyra72570;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 74411 74662 . - 0 ID=Phyra72570;Parent=Phyra72570;rank=5 scaffold_1 . exon 74411 74662 . - . ID=Phyra72570.5;Parent=Phyra72570;constitutive=1;rank=5 scaffold_1 . CDS 74749 74804 . - 0 ID=Phyra72570;Parent=Phyra72570;rank=4 scaffold_1 . exon 74749 74804 . - . ID=Phyra72570.4;Parent=Phyra72570;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 74871 75834 . - 0 ID=Phyra72570;Parent=Phyra72570;rank=3 scaffold_1 . exon 74871 75834 . - . ID=Phyra72570.3;Parent=Phyra72570;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 75910 76083 . - 0 ID=Phyra72570;Parent=Phyra72570;rank=2 scaffold_1 . exon 75910 76083 . - . ID=Phyra72570.2;Parent=Phyra72570;constitutive=1;rank=2 scaffold_1 . CDS 76192 76350 . - 0 ID=Phyra72570;Parent=Phyra72570;rank=1 scaffold_1 . exon 76192 76350 . - . ID=Phyra72570.1;Parent=Phyra72570;constitutive=1;rank=1 scaffold_1 . biological_region 84653 84655 0.999 - . logic_name=eponine scaffold_1 . biological_region 85767 85772 0.999 + . logic_name=eponine scaffold_1 . biological_region 87078 87083 0.999 - . logic_name=eponine scaffold_1 . biological_region 87091 87093 0.999 + . logic_name=eponine scaffold_1 . biological_region 87120 87122 0.999 - . logic_name=eponine scaffold_1 . repeat_region 87650 87657 . ? . description=dust scaffold_1 ensembl protein_coding_gene 84331 85070 . + . ID=Phyra72571;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000013;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 84331 85070 . + . ID=Phyra72571;Parent=Phyra72571;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 84331 84762 . + 0 ID=Phyra72571;Parent=Phyra72571;rank=1 scaffold_1 . exon 84331 84762 . + . ID=Phyra72571.1;Parent=Phyra72571;constitutive=1;rank=1 scaffold_1 . CDS 84842 84934 . + 0 ID=Phyra72571;Parent=Phyra72571;rank=2 scaffold_1 . exon 84842 84934 . + . ID=Phyra72571.2;Parent=Phyra72571;constitutive=1;rank=2 scaffold_1 . CDS 85026 85070 . + 0 ID=Phyra72571;Parent=Phyra72571;rank=3 scaffold_1 . exon 85026 85070 . + . ID=Phyra72571.3;Parent=Phyra72571;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 85370 86761 . + . ID=Phyra72572;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000014;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 85370 86761 . + . ID=Phyra72572;Parent=Phyra72572;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 85370 86761 . + 0 ID=Phyra72572;Parent=Phyra72572;rank=1 scaffold_1 . exon 85370 86761 . + . ID=Phyra72572.1;Parent=Phyra72572;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 86982 87194 . + . ID=Phyra93230;biotype=protein_coding;external_name=C_scaffold_1000007;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 86982 87194 . + . ID=Phyra93230;Parent=Phyra93230;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 86982 87194 . + 0 ID=Phyra93230;Parent=Phyra93230;rank=1 scaffold_1 . exon 86982 87194 . + . ID=Phyra93230.1;Parent=Phyra93230;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 88108 93981 . + . ID=Phyra93231;biotype=protein_coding;external_name=C_scaffold_1000008;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 88108 93981 . + . ID=Phyra93231;Parent=Phyra93231;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 88108 88198 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=1 scaffold_1 . exon 88108 88198 . + . ID=Phyra93231.1;Parent=Phyra93231;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 88238 88344 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=2 scaffold_1 . exon 88238 88344 . + . ID=Phyra93231.2;Parent=Phyra93231;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 88372 89006 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=3 scaffold_1 . exon 88372 89006 . + . ID=Phyra93231.3;Parent=Phyra93231;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 89162 89225 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=4 scaffold_1 . exon 89162 89225 . + . ID=Phyra93231.4;Parent=Phyra93231;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 89319 89850 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=5 scaffold_1 . exon 89319 89850 . + . ID=Phyra93231.5;Parent=Phyra93231;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . CDS 89908 90068 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=6 scaffold_1 . CDS 90232 90415 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=7 scaffold_1 . CDS 90516 90607 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=8 scaffold_1 . CDS 90681 90761 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=9 scaffold_1 . CDS 91053 91107 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=10 scaffold_1 . CDS 91181 91432 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=11 scaffold_1 . CDS 91652 91788 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=12 scaffold_1 . CDS 91849 91993 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=13 scaffold_1 . CDS 92068 92107 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=14 scaffold_1 . CDS 92351 92931 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=15 scaffold_1 . CDS 92966 93014 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=16 scaffold_1 . CDS 93270 93529 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=17 scaffold_1 . CDS 93569 93981 . + 0 ID=Phyra93231;Parent=Phyra93231;rank=18 scaffold_1 . repeat_region 97496 97522 . ? . description=trf scaffold_1 ensembl protein_coding_gene 94132 94672 . - . ID=Phyra72574;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000016;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 94132 94672 . - . ID=Phyra72574;Parent=Phyra72574;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 94132 94408 . - 0 ID=Phyra72574;Parent=Phyra72574;rank=2 scaffold_1 . exon 94132 94408 . - . ID=Phyra72574.2;Parent=Phyra72574;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 94488 94672 . - 0 ID=Phyra72574;Parent=Phyra72574;rank=1 scaffold_1 . exon 94488 94672 . - . ID=Phyra72574.1;Parent=Phyra72574;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 95439 98228 . + . ID=Phyra72575;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000017;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 95439 98228 . + . ID=Phyra72575;Parent=Phyra72575;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 95439 98228 . + 0 ID=Phyra72575;Parent=Phyra72575;rank=1 scaffold_1 . exon 95439 98228 . + . ID=Phyra72575.1;Parent=Phyra72575;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 98672 100547 . - . ID=Phyra72576;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000018;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 98672 100547 . - . ID=Phyra72576;Parent=Phyra72576;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 98672 99784 . - 0 ID=Phyra72576;Parent=Phyra72576;rank=3 scaffold_1 . exon 98672 99784 . - . ID=Phyra72576.3;Parent=Phyra72576;constitutive=1;rank=3 scaffold_1 . CDS 99857 100041 . - 0 ID=Phyra72576;Parent=Phyra72576;rank=2 scaffold_1 . CDS 100121 100547 . - 0 ID=Phyra72576;Parent=Phyra72576;rank=1 scaffold_1 . exon 89908 90068 . + . ID=Phyra93231.6;Parent=Phyra93231;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . exon 90232 90415 . + . ID=Phyra93231.7;Parent=Phyra93231;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_1 . exon 90516 90607 . + . ID=Phyra93231.8;Parent=Phyra93231;constitutive=1;ensembl_phase=1;rank=8 scaffold_1 . exon 90681 90761 . + . ID=Phyra93231.9;Parent=Phyra93231;constitutive=1;rank=9 scaffold_1 . exon 91053 91107 . + . ID=Phyra93231.10;Parent=Phyra93231;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_1 . exon 91181 91432 . + . ID=Phyra93231.11;Parent=Phyra93231;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_1 . exon 91652 91788 . + . ID=Phyra93231.12;Parent=Phyra93231;constitutive=1;ensembl_phase=1;rank=12 scaffold_1 . exon 91849 91993 . + . ID=Phyra93231.13;Parent=Phyra93231;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_1 . exon 92068 92107 . + . ID=Phyra93231.14;Parent=Phyra93231;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=14 scaffold_1 . exon 92351 92931 . + . ID=Phyra93231.15;Parent=Phyra93231;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=15 scaffold_1 . exon 92966 93014 . + . ID=Phyra93231.16;Parent=Phyra93231;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=16 scaffold_1 . exon 93270 93529 . + . ID=Phyra93231.17;Parent=Phyra93231;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=17 scaffold_1 . exon 93569 93981 . + . ID=Phyra93231.18;Parent=Phyra93231;constitutive=1;ensembl_phase=1;rank=18 scaffold_1 . biological_region 107751 107754 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 103370 104596 . + . ID=Phyra38871;biotype=protein_coding;external_name=gwEuk.1.370.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 103370 104596 . + . ID=Phyra38871;Parent=Phyra38871;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 103370 103610 . + 0 ID=Phyra38871;Parent=Phyra38871;rank=1 scaffold_1 . exon 103370 103610 . + . ID=Phyra38871.1;Parent=Phyra38871;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 103653 104596 . + 0 ID=Phyra38871;Parent=Phyra38871;rank=2 scaffold_1 . exon 103653 104596 . + . ID=Phyra38871.2;Parent=Phyra38871;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . exon 99857 100041 . - . ID=Phyra72576.2;Parent=Phyra72576;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . exon 100121 100547 . - . ID=Phyra72576.1;Parent=Phyra72576;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 105548 107590 . + . ID=Phyra72577;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000019;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 105548 107590 . + . ID=Phyra72577;Parent=Phyra72577;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 105548 107590 . + 0 ID=Phyra72577;Parent=Phyra72577;rank=1 scaffold_1 . exon 105548 107590 . + . ID=Phyra72577.1;Parent=Phyra72577;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 108153 109367 . + . ID=Phyra72578;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000020;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 108153 109367 . + . ID=Phyra72578;Parent=Phyra72578;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 108153 109367 . + 0 ID=Phyra72578;Parent=Phyra72578;rank=1 scaffold_1 . exon 108153 109367 . + . ID=Phyra72578.1;Parent=Phyra72578;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 114432 116138 . - . ID=Phyra38878;biotype=protein_coding;external_name=gwEuk.1.377.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 114432 116138 . - . ID=Phyra38878;Parent=Phyra38878;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 114432 116138 . - 0 ID=Phyra38878;Parent=Phyra38878;rank=1 scaffold_1 . exon 114432 116138 . - . ID=Phyra38878.1;Parent=Phyra38878;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 109521 110499 . + . ID=Phyra72579;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000021;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 109521 110499 . + . ID=Phyra72579;Parent=Phyra72579;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 109521 109929 . + 0 ID=Phyra72579;Parent=Phyra72579;rank=1 scaffold_1 . exon 109521 109929 . + . ID=Phyra72579.1;Parent=Phyra72579;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 110012 110499 . + 0 ID=Phyra72579;Parent=Phyra72579;rank=2 scaffold_1 . exon 110012 110499 . + . ID=Phyra72579.2;Parent=Phyra72579;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 110853 111870 . + . ID=Phyra72580;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000022;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 110853 111870 . + . ID=Phyra72580;Parent=Phyra72580;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 110853 110860 . + 0 ID=Phyra72580;Parent=Phyra72580;rank=1 scaffold_1 . exon 110853 110860 . + . ID=Phyra72580.1;Parent=Phyra72580;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 110935 111293 . + 0 ID=Phyra72580;Parent=Phyra72580;rank=2 scaffold_1 . exon 110935 111293 . + . ID=Phyra72580.2;Parent=Phyra72580;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 111375 111611 . + 0 ID=Phyra72580;Parent=Phyra72580;rank=3 scaffold_1 . exon 111375 111611 . + . ID=Phyra72580.3;Parent=Phyra72580;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 111677 111870 . + 0 ID=Phyra72580;Parent=Phyra72580;rank=4 scaffold_1 . exon 111677 111870 . + . ID=Phyra72580.4;Parent=Phyra72580;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 ensembl protein_coding_gene 112376 113177 . + . ID=Phyra72581;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000023;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 112376 113177 . + . ID=Phyra72581;Parent=Phyra72581;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 112376 112681 . + 0 ID=Phyra72581;Parent=Phyra72581;rank=1 scaffold_1 . exon 112376 112681 . + . ID=Phyra72581.1;Parent=Phyra72581;constitutive=1;rank=1 scaffold_1 . CDS 112743 113177 . + 0 ID=Phyra72581;Parent=Phyra72581;rank=2 scaffold_1 . exon 112743 113177 . + . ID=Phyra72581.2;Parent=Phyra72581;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 116753 117638 . + . ID=Phyra93238;biotype=protein_coding;external_name=C_scaffold_1000015;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 116753 117638 . + . ID=Phyra93238;Parent=Phyra93238;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 116753 117595 . + 0 ID=Phyra93238;Parent=Phyra93238;rank=1 scaffold_1 . exon 116753 117595 . + . ID=Phyra93238.1;Parent=Phyra93238;constitutive=1;rank=1 scaffold_1 . CDS 117636 117638 . + 0 ID=Phyra93238;Parent=Phyra93238;rank=2 scaffold_1 . exon 117636 117638 . + . ID=Phyra93238.2;Parent=Phyra93238;constitutive=1;rank=2 scaffold_1 . biological_region 121001 121002 0.999 + . logic_name=eponine scaffold_1 . biological_region 121877 121878 0.999 + . logic_name=eponine scaffold_1 . biological_region 125785 125792 0.999 - . logic_name=eponine scaffold_1 . repeat_region 126946 127000 . ? . description=dust scaffold_1 . repeat_region 126947 127020 . ? . description=trf scaffold_1 . repeat_region 126947 127030 . ? . description=trf scaffold_1 . repeat_region 126959 126999 . ? . description=trf scaffold_1 . repeat_region 127085 127131 . ? . description=trf scaffold_1 . biological_region 127253 127256 0.999 + . logic_name=eponine scaffold_1 . biological_region 127304 127306 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 120250 125752 . - . ID=Phyra72583;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000025;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 120250 125752 . - . ID=Phyra72583;Parent=Phyra72583;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 120250 121437 . - 0 ID=Phyra72583;Parent=Phyra72583;rank=7 scaffold_1 . exon 120250 121437 . - . ID=Phyra72583.7;Parent=Phyra72583;constitutive=1;rank=7 scaffold_1 . CDS 121520 121597 . - 0 ID=Phyra72583;Parent=Phyra72583;rank=6 scaffold_1 . exon 121520 121597 . - . ID=Phyra72583.6;Parent=Phyra72583;constitutive=1;rank=6 scaffold_1 . CDS 121676 121773 . - 0 ID=Phyra72583;Parent=Phyra72583;rank=5 scaffold_1 . exon 121676 121773 . - . ID=Phyra72583.5;Parent=Phyra72583;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 121831 121983 . - 0 ID=Phyra72583;Parent=Phyra72583;rank=4 scaffold_1 . exon 121831 121983 . - . ID=Phyra72583.4;Parent=Phyra72583;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 122163 122808 . - 0 ID=Phyra72583;Parent=Phyra72583;rank=3 scaffold_1 . exon 122163 122808 . - . ID=Phyra72583.3;Parent=Phyra72583;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 122885 124122 . - 0 ID=Phyra72583;Parent=Phyra72583;rank=2 scaffold_1 . exon 122885 124122 . - . ID=Phyra72583.2;Parent=Phyra72583;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 124225 125752 . - 0 ID=Phyra72583;Parent=Phyra72583;rank=1 scaffold_1 . exon 124225 125752 . - . ID=Phyra72583.1;Parent=Phyra72583;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 125957 128017 . + . ID=Phyra72584;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000026;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 125957 128017 . + . ID=Phyra72584;Parent=Phyra72584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 125957 128017 . + 0 ID=Phyra72584;Parent=Phyra72584;rank=1 scaffold_1 . exon 125957 128017 . + . ID=Phyra72584.1;Parent=Phyra72584;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 128139 132196 . - . ID=Phyra72585;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000027;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 128139 132196 . - . ID=Phyra72585;Parent=Phyra72585;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 128139 129861 . - 0 ID=Phyra72585;Parent=Phyra72585;rank=8 scaffold_1 . exon 128139 129861 . - . ID=Phyra72585.8;Parent=Phyra72585;constitutive=1;ensembl_phase=2;rank=8 scaffold_1 . CDS 130185 130296 . - 0 ID=Phyra72585;Parent=Phyra72585;rank=7 scaffold_1 . CDS 130352 130416 . - 0 ID=Phyra72585;Parent=Phyra72585;rank=6 scaffold_1 . CDS 130475 130576 . - 0 ID=Phyra72585;Parent=Phyra72585;rank=5 scaffold_1 . CDS 130648 131480 . - 0 ID=Phyra72585;Parent=Phyra72585;rank=4 scaffold_1 . CDS 131546 131696 . - 0 ID=Phyra72585;Parent=Phyra72585;rank=3 scaffold_1 . CDS 131752 131873 . - 0 ID=Phyra72585;Parent=Phyra72585;rank=2 scaffold_1 . CDS 131936 132196 . - 0 ID=Phyra72585;Parent=Phyra72585;rank=1 scaffold_1 . exon 130185 130296 . - . ID=Phyra72585.7;Parent=Phyra72585;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_1 . exon 130352 130416 . - . ID=Phyra72585.6;Parent=Phyra72585;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_1 . exon 130475 130576 . - . ID=Phyra72585.5;Parent=Phyra72585;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_1 . exon 130648 131480 . - . ID=Phyra72585.4;Parent=Phyra72585;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . exon 131546 131696 . - . ID=Phyra72585.3;Parent=Phyra72585;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . exon 131752 131873 . - . ID=Phyra72585.2;Parent=Phyra72585;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . exon 131936 132196 . - . ID=Phyra72585.1;Parent=Phyra72585;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 134086 134956 . + . ID=Phyra72587;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000029;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 134086 134956 . + . ID=Phyra72587;Parent=Phyra72587;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 134086 134904 . + 0 ID=Phyra72587;Parent=Phyra72587;rank=1 scaffold_1 . exon 134086 134904 . + . ID=Phyra72587.1;Parent=Phyra72587;constitutive=1;rank=1 scaffold_1 . CDS 134942 134956 . + 0 ID=Phyra72587;Parent=Phyra72587;rank=2 scaffold_1 . exon 134942 134956 . + . ID=Phyra72587.2;Parent=Phyra72587;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 138437 139771 . - . ID=Phyra72590;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000032;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 138437 139771 . - . ID=Phyra72590;Parent=Phyra72590;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 138437 138646 . - 0 ID=Phyra72590;Parent=Phyra72590;rank=5 scaffold_1 . exon 138437 138646 . - . ID=Phyra72590.5;Parent=Phyra72590;constitutive=1;rank=5 scaffold_1 . CDS 138709 138772 . - 0 ID=Phyra72590;Parent=Phyra72590;rank=4 scaffold_1 . exon 138709 138772 . - . ID=Phyra72590.4;Parent=Phyra72590;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 138839 139038 . - 0 ID=Phyra72590;Parent=Phyra72590;rank=3 scaffold_1 . exon 138839 139038 . - . ID=Phyra72590.3;Parent=Phyra72590;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 139103 139327 . - 0 ID=Phyra72590;Parent=Phyra72590;rank=2 scaffold_1 . exon 139103 139327 . - . ID=Phyra72590.2;Parent=Phyra72590;constitutive=1;rank=2 scaffold_1 . CDS 139394 139771 . - 0 ID=Phyra72590;Parent=Phyra72590;rank=1 scaffold_1 ensembl protein_coding_gene 132409 133799 . + . ID=Phyra93244;biotype=protein_coding;external_name=C_scaffold_1000021;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 132409 133799 . + . ID=Phyra93244;Parent=Phyra93244;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 132409 132497 . + 0 ID=Phyra93244;Parent=Phyra93244;rank=1 scaffold_1 . exon 132409 132497 . + . ID=Phyra93244.1;Parent=Phyra93244;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 132642 132720 . + 0 ID=Phyra93244;Parent=Phyra93244;rank=2 scaffold_1 . exon 132642 132720 . + . ID=Phyra93244.2;Parent=Phyra93244;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 132783 133799 . + 0 ID=Phyra93244;Parent=Phyra93244;rank=3 scaffold_1 . exon 132783 133799 . + . ID=Phyra93244.3;Parent=Phyra93244;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 135996 138133 . + . ID=Phyra93247;biotype=protein_coding;external_name=C_scaffold_1000024;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 135996 138133 . + . ID=Phyra93247;Parent=Phyra93247;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 135996 136503 . + 0 ID=Phyra93247;Parent=Phyra93247;rank=1 scaffold_1 . exon 135996 136503 . + . ID=Phyra93247.1;Parent=Phyra93247;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 136537 137191 . + 0 ID=Phyra93247;Parent=Phyra93247;rank=2 scaffold_1 . exon 136537 137191 . + . ID=Phyra93247.2;Parent=Phyra93247;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 137356 138013 . + 0 ID=Phyra93247;Parent=Phyra93247;rank=3 scaffold_1 . exon 137356 138013 . + . ID=Phyra93247.3;Parent=Phyra93247;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 138116 138133 . + 0 ID=Phyra93247;Parent=Phyra93247;rank=4 scaffold_1 . exon 138116 138133 . + . ID=Phyra93247.4;Parent=Phyra93247;constitutive=1;rank=4 scaffold_1 . biological_region 139620 139624 0.999 + . logic_name=eponine scaffold_1 . biological_region 140052 140058 0.999 + . logic_name=eponine scaffold_1 . biological_region 140061 140076 0.999 - . logic_name=eponine scaffold_1 . biological_region 140073 140077 0.999 + . logic_name=eponine scaffold_1 . repeat_region 141002 141059 . ? . description=dust scaffold_1 . repeat_region 142807 142844 . ? . description=trf scaffold_1 . biological_region 143436 143438 0.999 - . logic_name=eponine scaffold_1 . biological_region 143494 143495 0.999 + . logic_name=eponine scaffold_1 . biological_region 144114 144114 0.999 + . logic_name=eponine scaffold_1 . biological_region 144396 144400 0.999 + . logic_name=eponine scaffold_1 . repeat_region 144771 144848 . ? . description=trf scaffold_1 . repeat_region 144771 144857 . ? . description=trf scaffold_1 . repeat_region 144891 144926 . ? . description=trf scaffold_1 . biological_region 145198 145202 0.999 - . logic_name=eponine scaffold_1 . biological_region 146232 146234 0.999 + . logic_name=eponine scaffold_1 . biological_region 148975 148978 0.999 + . logic_name=eponine scaffold_1 . biological_region 149022 149027 0.999 + . logic_name=eponine scaffold_1 . exon 139394 139771 . - . ID=Phyra72590.1;Parent=Phyra72590;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 139918 141123 . + . ID=Phyra72591;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000033;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 139918 141123 . + . ID=Phyra72591;Parent=Phyra72591;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 139918 141123 . + 0 ID=Phyra72591;Parent=Phyra72591;rank=1 scaffold_1 . exon 139918 141123 . + . ID=Phyra72591.1;Parent=Phyra72591;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 141339 141770 . - . ID=Phyra72592;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000034;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 141339 141770 . - . ID=Phyra72592;Parent=Phyra72592;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 141339 141770 . - 0 ID=Phyra72592;Parent=Phyra72592;rank=1 scaffold_1 . exon 141339 141770 . - . ID=Phyra72592.1;Parent=Phyra72592;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 142969 144180 . - . ID=Phyra72593;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000035;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 142969 144180 . - . ID=Phyra72593;Parent=Phyra72593;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 142969 144180 . - 0 ID=Phyra72593;Parent=Phyra72593;rank=1 scaffold_1 . exon 142969 144180 . - . ID=Phyra72593.1;Parent=Phyra72593;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 145817 147583 . + . ID=Phyra72594;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000036;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 145817 147583 . + . ID=Phyra72594;Parent=Phyra72594;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 145817 146904 . + 0 ID=Phyra72594;Parent=Phyra72594;rank=1 scaffold_1 . exon 145817 146904 . + . ID=Phyra72594.1;Parent=Phyra72594;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 147153 147332 . + 0 ID=Phyra72594;Parent=Phyra72594;rank=2 scaffold_1 . exon 147153 147332 . + . ID=Phyra72594.2;Parent=Phyra72594;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 147412 147583 . + 0 ID=Phyra72594;Parent=Phyra72594;rank=3 scaffold_1 . exon 147412 147583 . + . ID=Phyra72594.3;Parent=Phyra72594;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 ensembl protein_coding_gene 148989 151366 . + . ID=Phyra72596;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000038;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 148989 151366 . + . ID=Phyra72596;Parent=Phyra72596;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 148989 149298 . + 0 ID=Phyra72596;Parent=Phyra72596;rank=1 scaffold_1 . exon 148989 149298 . + . ID=Phyra72596.1;Parent=Phyra72596;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 149364 149454 . + 0 ID=Phyra72596;Parent=Phyra72596;rank=2 scaffold_1 . CDS 149515 149593 . + 0 ID=Phyra72596;Parent=Phyra72596;rank=3 scaffold_1 . CDS 149921 151366 . + 0 ID=Phyra72596;Parent=Phyra72596;rank=4 scaffold_1 ensembl protein_coding_gene 147729 148809 . - . ID=Phyra93250;biotype=protein_coding;external_name=C_scaffold_1000027;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 147729 148809 . - . ID=Phyra93250;Parent=Phyra93250;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 147729 147842 . - 0 ID=Phyra93250;Parent=Phyra93250;rank=5 scaffold_1 . exon 147729 147842 . - . ID=Phyra93250.5;Parent=Phyra93250;constitutive=1;rank=5 scaffold_1 . CDS 148086 148183 . - 0 ID=Phyra93250;Parent=Phyra93250;rank=4 scaffold_1 . exon 148086 148183 . - . ID=Phyra93250.4;Parent=Phyra93250;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 148264 148513 . - 0 ID=Phyra93250;Parent=Phyra93250;rank=3 scaffold_1 . exon 148264 148513 . - . ID=Phyra93250.3;Parent=Phyra93250;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 148589 148663 . - 0 ID=Phyra93250;Parent=Phyra93250;rank=2 scaffold_1 . exon 148589 148663 . - . ID=Phyra93250.2;Parent=Phyra93250;constitutive=1;rank=2 scaffold_1 . CDS 148735 148809 . - 0 ID=Phyra93250;Parent=Phyra93250;rank=1 scaffold_1 . exon 148735 148809 . - . ID=Phyra93250.1;Parent=Phyra93250;constitutive=1;rank=1 scaffold_1 . exon 149364 149454 . + . ID=Phyra72596.2;Parent=Phyra72596;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . exon 149515 149593 . + . ID=Phyra72596.3;Parent=Phyra72596;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . exon 149921 151366 . + . ID=Phyra72596.4;Parent=Phyra72596;constitutive=1;rank=4 scaffold_1 ensembl protein_coding_gene 151673 152374 . - . ID=Phyra72597;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000039;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 151673 152374 . - . ID=Phyra72597;Parent=Phyra72597;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 151673 152374 . - 0 ID=Phyra72597;Parent=Phyra72597;rank=1 scaffold_1 . exon 151673 152374 . - . ID=Phyra72597.1;Parent=Phyra72597;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 153196 154107 . - . ID=Phyra72598;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000040;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 153196 154107 . - . ID=Phyra72598;Parent=Phyra72598;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 153196 154107 . - 0 ID=Phyra72598;Parent=Phyra72598;rank=1 scaffold_1 . exon 153196 154107 . - . ID=Phyra72598.1;Parent=Phyra72598;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 154275 154967 . - . ID=Phyra72599;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000041;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 154275 154967 . - . ID=Phyra72599;Parent=Phyra72599;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 154275 154967 . - 0 ID=Phyra72599;Parent=Phyra72599;rank=1 scaffold_1 . exon 154275 154967 . - . ID=Phyra72599.1;Parent=Phyra72599;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 156330 158047 . + . ID=Phyra72600;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000042;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 156330 158047 . + . ID=Phyra72600;Parent=Phyra72600;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 156330 156419 . + 0 ID=Phyra72600;Parent=Phyra72600;rank=1 scaffold_1 . exon 156330 156419 . + . ID=Phyra72600.1;Parent=Phyra72600;constitutive=1;rank=1 scaffold_1 . CDS 156490 156552 . + 0 ID=Phyra72600;Parent=Phyra72600;rank=2 scaffold_1 . exon 156490 156552 . + . ID=Phyra72600.2;Parent=Phyra72600;constitutive=1;rank=2 scaffold_1 . CDS 156626 158047 . + 0 ID=Phyra72600;Parent=Phyra72600;rank=3 scaffold_1 . exon 156626 158047 . + . ID=Phyra72600.3;Parent=Phyra72600;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 161131 162270 . - . ID=Phyra72601;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000043;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 161131 162270 . - . ID=Phyra72601;Parent=Phyra72601;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 161131 162270 . - 0 ID=Phyra72601;Parent=Phyra72601;rank=1 scaffold_1 . exon 161131 162270 . - . ID=Phyra72601.1;Parent=Phyra72601;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 162432 166937 . - . ID=Phyra93252;biotype=protein_coding;external_name=C_scaffold_1000029;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 162432 166937 . - . ID=Phyra93252;Parent=Phyra93252;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 162432 163210 . - 0 ID=Phyra93252;Parent=Phyra93252;rank=10 scaffold_1 . exon 162432 163210 . - . ID=Phyra93252.10;Parent=Phyra93252;constitutive=1;ensembl_phase=1;rank=10 scaffold_1 . CDS 163298 163367 . - 0 ID=Phyra93252;Parent=Phyra93252;rank=9 scaffold_1 . exon 163298 163367 . - . ID=Phyra93252.9;Parent=Phyra93252;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_1 . CDS 163416 163528 . - 0 ID=Phyra93252;Parent=Phyra93252;rank=8 scaffold_1 . exon 163416 163528 . - . ID=Phyra93252.8;Parent=Phyra93252;constitutive=1;ensembl_phase=1;rank=8 scaffold_1 . CDS 163566 163612 . - 0 ID=Phyra93252;Parent=Phyra93252;rank=7 scaffold_1 . exon 163566 163612 . - . ID=Phyra93252.7;Parent=Phyra93252;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_1 . CDS 163672 164113 . - 0 ID=Phyra93252;Parent=Phyra93252;rank=6 scaffold_1 . exon 163672 164113 . - . ID=Phyra93252.6;Parent=Phyra93252;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_1 . CDS 165193 165196 . - 0 ID=Phyra93252;Parent=Phyra93252;rank=5 scaffold_1 . exon 165193 165196 . - . ID=Phyra93252.5;Parent=Phyra93252;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . CDS 165285 165677 . - 0 ID=Phyra93252;Parent=Phyra93252;rank=4 scaffold_1 . exon 165285 165677 . - . ID=Phyra93252.4;Parent=Phyra93252;constitutive=1;rank=4 scaffold_1 . CDS 165792 166003 . - 0 ID=Phyra93252;Parent=Phyra93252;rank=3 scaffold_1 . exon 165792 166003 . - . ID=Phyra93252.3;Parent=Phyra93252;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 166160 166427 . - 0 ID=Phyra93252;Parent=Phyra93252;rank=2 scaffold_1 . exon 166160 166427 . - . ID=Phyra93252.2;Parent=Phyra93252;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 166482 166937 . - 0 ID=Phyra93252;Parent=Phyra93252;rank=1 scaffold_1 . exon 166482 166937 . - . ID=Phyra93252.1;Parent=Phyra93252;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 167668 169818 . - . ID=Phyra93255;biotype=protein_coding;external_name=C_scaffold_1000032;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 167668 169818 . - . ID=Phyra93255;Parent=Phyra93255;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 167668 167720 . - 0 ID=Phyra93255;Parent=Phyra93255;rank=8 scaffold_1 . exon 167668 167720 . - . ID=Phyra93255.8;Parent=Phyra93255;constitutive=1;ensembl_phase=1;rank=8 scaffold_1 . CDS 167793 167916 . - 0 ID=Phyra93255;Parent=Phyra93255;rank=7 scaffold_1 . exon 167793 167916 . - . ID=Phyra93255.7;Parent=Phyra93255;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_1 . CDS 167980 168057 . - 0 ID=Phyra93255;Parent=Phyra93255;rank=6 scaffold_1 . exon 167980 168057 . - . ID=Phyra93255.6;Parent=Phyra93255;constitutive=1;rank=6 scaffold_1 . CDS 168129 168528 . - 0 ID=Phyra93255;Parent=Phyra93255;rank=5 scaffold_1 . exon 168129 168528 . - . ID=Phyra93255.5;Parent=Phyra93255;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 168550 168668 . - 0 ID=Phyra93255;Parent=Phyra93255;rank=4 scaffold_1 . exon 168550 168668 . - . ID=Phyra93255.4;Parent=Phyra93255;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 168743 169001 . - 0 ID=Phyra93255;Parent=Phyra93255;rank=3 scaffold_1 . exon 168743 169001 . - . ID=Phyra93255.3;Parent=Phyra93255;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 169074 169198 . - 0 ID=Phyra93255;Parent=Phyra93255;rank=2 scaffold_1 . exon 169074 169198 . - . ID=Phyra93255.2;Parent=Phyra93255;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 169279 169818 . - 0 ID=Phyra93255;Parent=Phyra93255;rank=1 scaffold_1 . biological_region 169344 169348 0.999 + . logic_name=eponine scaffold_1 . biological_region 169625 169628 0.999 + . logic_name=eponine scaffold_1 . biological_region 169646 169650 0.999 + . logic_name=eponine scaffold_1 . biological_region 170826 170829 0.999 + . logic_name=eponine scaffold_1 . biological_region 170846 170846 0.999 + . logic_name=eponine scaffold_1 . biological_region 170865 170871 0.999 + . logic_name=eponine scaffold_1 . biological_region 170902 170909 0.999 - . logic_name=eponine scaffold_1 . biological_region 170957 170961 0.999 - . logic_name=eponine scaffold_1 . biological_region 171293 171295 0.999 - . logic_name=eponine scaffold_1 . repeat_region 171789 171877 . ? . description=dust scaffold_1 . repeat_region 171821 171850 . ? . description=trf scaffold_1 . biological_region 172035 172038 0.999 - . logic_name=eponine scaffold_1 . biological_region 172073 172075 0.999 - . logic_name=eponine scaffold_1 . biological_region 172842 172843 0.999 - . logic_name=eponine scaffold_1 . biological_region 172863 172866 0.999 - . logic_name=eponine scaffold_1 . biological_region 172891 172894 0.999 - . logic_name=eponine scaffold_1 . repeat_region 173413 173435 . ? . description=dust scaffold_1 . repeat_region 173416 173435 . ? . description=trf scaffold_1 . biological_region 175093 175098 0.999 + . logic_name=eponine scaffold_1 . biological_region 176033 176036 0.999 - . logic_name=eponine scaffold_1 . biological_region 176035 176039 0.999 + . logic_name=eponine scaffold_1 . biological_region 176170 176173 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 171359 172921 . + . ID=Phyra72606;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000048;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 171359 172921 . + . ID=Phyra72606;Parent=Phyra72606;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 171359 172576 . + 0 ID=Phyra72606;Parent=Phyra72606;rank=1 scaffold_1 . exon 171359 172576 . + . ID=Phyra72606.1;Parent=Phyra72606;constitutive=1;rank=1 scaffold_1 . CDS 172916 172921 . + 0 ID=Phyra72606;Parent=Phyra72606;rank=2 scaffold_1 . exon 172916 172921 . + . ID=Phyra72606.2;Parent=Phyra72606;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 173039 175550 . - . ID=Phyra72607;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000049;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 173039 175550 . - . ID=Phyra72607;Parent=Phyra72607;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 173039 173231 . - 0 ID=Phyra72607;Parent=Phyra72607;rank=6 scaffold_1 . exon 173039 173231 . - . ID=Phyra72607.6;Parent=Phyra72607;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 . CDS 173298 173399 . - 0 ID=Phyra72607;Parent=Phyra72607;rank=5 scaffold_1 . exon 173298 173399 . - . ID=Phyra72607.5;Parent=Phyra72607;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_1 . CDS 173496 173584 . - 0 ID=Phyra72607;Parent=Phyra72607;rank=4 scaffold_1 . exon 173496 173584 . - . ID=Phyra72607.4;Parent=Phyra72607;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 173644 174130 . - 0 ID=Phyra72607;Parent=Phyra72607;rank=3 scaffold_1 . exon 173644 174130 . - . ID=Phyra72607.3;Parent=Phyra72607;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 174203 174304 . - 0 ID=Phyra72607;Parent=Phyra72607;rank=2 scaffold_1 . exon 174203 174304 . - . ID=Phyra72607.2;Parent=Phyra72607;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 174391 175550 . - 0 ID=Phyra72607;Parent=Phyra72607;rank=1 scaffold_1 . exon 174391 175550 . - . ID=Phyra72607.1;Parent=Phyra72607;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 175941 176863 . + . ID=Phyra72608;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000050;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 175941 176863 . + . ID=Phyra72608;Parent=Phyra72608;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 175941 176708 . + 0 ID=Phyra72608;Parent=Phyra72608;rank=1 scaffold_1 . exon 175941 176708 . + . ID=Phyra72608.1;Parent=Phyra72608;constitutive=1;rank=1 scaffold_1 . CDS 176801 176863 . + 0 ID=Phyra72608;Parent=Phyra72608;rank=2 scaffold_1 . exon 176801 176863 . + . ID=Phyra72608.2;Parent=Phyra72608;constitutive=1;rank=2 scaffold_1 . exon 169279 169818 . - . ID=Phyra93255.1;Parent=Phyra93255;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 170814 171245 . - . ID=Phyra93256;biotype=protein_coding;external_name=C_scaffold_1000033;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 170814 171245 . - . ID=Phyra93256;Parent=Phyra93256;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 170814 171245 . - 0 ID=Phyra93256;Parent=Phyra93256;rank=1 scaffold_1 . exon 170814 171245 . - . ID=Phyra93256.1;Parent=Phyra93256;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 180292 181074 . - . ID=Phyra72609;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000051;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 180292 181074 . - . ID=Phyra72609;Parent=Phyra72609;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 180292 180936 . - 0 ID=Phyra72609;Parent=Phyra72609;rank=2 scaffold_1 . exon 180292 180936 . - . ID=Phyra72609.2;Parent=Phyra72609;constitutive=1;rank=2 scaffold_1 . CDS 181003 181074 . - 0 ID=Phyra72609;Parent=Phyra72609;rank=1 scaffold_1 . exon 181003 181074 . - . ID=Phyra72609.1;Parent=Phyra72609;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 181423 182190 . + . ID=Phyra72610;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000052;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 181423 182190 . + . ID=Phyra72610;Parent=Phyra72610;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 181423 182190 . + 0 ID=Phyra72610;Parent=Phyra72610;rank=1 scaffold_1 . exon 181423 182190 . + . ID=Phyra72610.1;Parent=Phyra72610;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 182431 185330 . - . ID=Phyra72611;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000053;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 182431 185330 . - . ID=Phyra72611;Parent=Phyra72611;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 182431 184570 . - 0 ID=Phyra72611;Parent=Phyra72611;rank=2 scaffold_1 . exon 182431 184570 . - . ID=Phyra72611.2;Parent=Phyra72611;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 185212 185330 . - 0 ID=Phyra72611;Parent=Phyra72611;rank=1 scaffold_1 . exon 185212 185330 . - . ID=Phyra72611.1;Parent=Phyra72611;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 186756 191039 . + . ID=Phyra72612;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000054;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 186756 191039 . + . ID=Phyra72612;Parent=Phyra72612;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 186756 191039 . + 0 ID=Phyra72612;Parent=Phyra72612;rank=1 scaffold_1 . exon 186756 191039 . + . ID=Phyra72612.1;Parent=Phyra72612;constitutive=1;rank=1 scaffold_1 . repeat_region 191041 191071 . ? . description=trf scaffold_1 . repeat_region 191041 191071 . ? . description=dust scaffold_1 . repeat_region 191181 191206 . ? . description=dust scaffold_1 . repeat_region 193213 193220 . ? . description=dust scaffold_1 . biological_region 197329 197336 0.999 + . logic_name=eponine scaffold_1 . biological_region 197492 197493 0.999 - . logic_name=eponine scaffold_1 . biological_region 197552 197553 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 191288 192157 . - . ID=Phyra71024;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000004;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 191288 192157 . - . ID=Phyra71024;Parent=Phyra71024;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 191288 192157 . - 0 ID=Phyra71024;Parent=Phyra71024;rank=1 scaffold_1 . exon 191288 192157 . - . ID=Phyra71024.1;Parent=Phyra71024;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 193808 194242 . + . ID=Phyra71025;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000005;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 193808 194242 . + . ID=Phyra71025;Parent=Phyra71025;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 193808 194242 . + 0 ID=Phyra71025;Parent=Phyra71025;rank=1 scaffold_1 . exon 193808 194242 . + . ID=Phyra71025.1;Parent=Phyra71025;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 192417 193516 . - . ID=Phyra72614;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000056;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 192417 193516 . - . ID=Phyra72614;Parent=Phyra72614;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 192417 192631 . - 0 ID=Phyra72614;Parent=Phyra72614;rank=4 scaffold_1 . exon 192417 192631 . - . ID=Phyra72614.4;Parent=Phyra72614;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 192711 193203 . - 0 ID=Phyra72614;Parent=Phyra72614;rank=3 scaffold_1 . exon 192711 193203 . - . ID=Phyra72614.3;Parent=Phyra72614;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 193282 193347 . - 0 ID=Phyra72614;Parent=Phyra72614;rank=2 scaffold_1 . exon 193282 193347 . - . ID=Phyra72614.2;Parent=Phyra72614;constitutive=1;rank=2 scaffold_1 . CDS 193418 193516 . - 0 ID=Phyra72614;Parent=Phyra72614;rank=1 scaffold_1 . exon 193418 193516 . - . ID=Phyra72614.1;Parent=Phyra72614;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 197380 199398 . + . ID=Phyra72616;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000058;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 197380 199398 . + . ID=Phyra72616;Parent=Phyra72616;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 197380 199398 . + 0 ID=Phyra72616;Parent=Phyra72616;rank=1 scaffold_1 . exon 197380 199398 . + . ID=Phyra72616.1;Parent=Phyra72616;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 199898 203614 . + . ID=Phyra72617;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000059;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 199898 203614 . + . ID=Phyra72617;Parent=Phyra72617;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 199898 200853 . + 0 ID=Phyra72617;Parent=Phyra72617;rank=1 scaffold_1 . exon 199898 200853 . + . ID=Phyra72617.1;Parent=Phyra72617;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 201165 201408 . + 0 ID=Phyra72617;Parent=Phyra72617;rank=2 scaffold_1 . exon 201165 201408 . + . ID=Phyra72617.2;Parent=Phyra72617;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 201665 201706 . + 0 ID=Phyra72617;Parent=Phyra72617;rank=3 scaffold_1 . exon 201665 201706 . + . ID=Phyra72617.3;Parent=Phyra72617;constitutive=1;rank=3 scaffold_1 . CDS 201890 202085 . + 0 ID=Phyra72617;Parent=Phyra72617;rank=4 scaffold_1 . exon 201890 202085 . + . ID=Phyra72617.4;Parent=Phyra72617;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 202401 203614 . + 0 ID=Phyra72617;Parent=Phyra72617;rank=5 scaffold_1 . exon 202401 203614 . + . ID=Phyra72617.5;Parent=Phyra72617;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 ensembl protein_coding_gene 203699 204775 . - . ID=Phyra72618;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000060;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 203699 204775 . - . ID=Phyra72618;Parent=Phyra72618;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 203699 204775 . - 0 ID=Phyra72618;Parent=Phyra72618;rank=1 scaffold_1 . exon 203699 204775 . - . ID=Phyra72618.1;Parent=Phyra72618;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 207761 209095 . + . ID=Phyra72619;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000061;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 207761 209095 . + . ID=Phyra72619;Parent=Phyra72619;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 207761 209095 . + 0 ID=Phyra72619;Parent=Phyra72619;rank=1 scaffold_1 . exon 207761 209095 . + . ID=Phyra72619.1;Parent=Phyra72619;constitutive=1;rank=1 scaffold_1 . biological_region 210941 210941 0.999 - . logic_name=eponine scaffold_1 . repeat_region 212820 212853 . ? . description=trf scaffold_1 . biological_region 216193 216195 0.999 - . logic_name=eponine scaffold_1 . biological_region 217282 217285 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 209735 212635 . + . ID=Phyra72620;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000062;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 209735 212635 . + . ID=Phyra72620;Parent=Phyra72620;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 209735 210024 . + 0 ID=Phyra72620;Parent=Phyra72620;rank=1 scaffold_1 . exon 209735 210024 . + . ID=Phyra72620.1;Parent=Phyra72620;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 210103 210184 . + 0 ID=Phyra72620;Parent=Phyra72620;rank=2 scaffold_1 . exon 210103 210184 . + . ID=Phyra72620.2;Parent=Phyra72620;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 210249 210718 . + 0 ID=Phyra72620;Parent=Phyra72620;rank=3 scaffold_1 . exon 210249 210718 . + . ID=Phyra72620.3;Parent=Phyra72620;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 210787 212383 . + 0 ID=Phyra72620;Parent=Phyra72620;rank=4 scaffold_1 . exon 210787 212383 . + . ID=Phyra72620.4;Parent=Phyra72620;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 212465 212635 . + 0 ID=Phyra72620;Parent=Phyra72620;rank=5 scaffold_1 . exon 212465 212635 . + . ID=Phyra72620.5;Parent=Phyra72620;constitutive=1;rank=5 scaffold_1 ensembl protein_coding_gene 213096 217262 . - . ID=Phyra72621;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000063;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 213096 217262 . - . ID=Phyra72621;Parent=Phyra72621;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 213096 217262 . - 0 ID=Phyra72621;Parent=Phyra72621;rank=1 scaffold_1 . exon 213096 217262 . - . ID=Phyra72621.1;Parent=Phyra72621;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 218157 219672 . + . ID=Phyra72622;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000064;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 218157 219672 . + . ID=Phyra72622;Parent=Phyra72622;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 218157 218586 . + 0 ID=Phyra72622;Parent=Phyra72622;rank=1 scaffold_1 . exon 218157 218586 . + . ID=Phyra72622.1;Parent=Phyra72622;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 218648 218756 . + 0 ID=Phyra72622;Parent=Phyra72622;rank=2 scaffold_1 . exon 218648 218756 . + . ID=Phyra72622.2;Parent=Phyra72622;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 218829 219672 . + 0 ID=Phyra72622;Parent=Phyra72622;rank=3 scaffold_1 . exon 218829 219672 . + . ID=Phyra72622.3;Parent=Phyra72622;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . repeat_region 221925 221933 . ? . description=dust scaffold_1 . repeat_region 225990 225998 . ? . description=dust scaffold_1 ensembl protein_coding_gene 219912 221813 . + . ID=Phyra72623;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000065;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 219912 221813 . + . ID=Phyra72623;Parent=Phyra72623;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 219912 220754 . + 0 ID=Phyra72623;Parent=Phyra72623;rank=1 scaffold_1 . exon 219912 220754 . + . ID=Phyra72623.1;Parent=Phyra72623;constitutive=1;rank=1 scaffold_1 . CDS 220833 221009 . + 0 ID=Phyra72623;Parent=Phyra72623;rank=2 scaffold_1 . exon 220833 221009 . + . ID=Phyra72623.2;Parent=Phyra72623;constitutive=1;rank=2 scaffold_1 . CDS 221075 221191 . + 0 ID=Phyra72623;Parent=Phyra72623;rank=3 scaffold_1 . exon 221075 221191 . + . ID=Phyra72623.3;Parent=Phyra72623;constitutive=1;rank=3 scaffold_1 . CDS 221283 221450 . + 0 ID=Phyra72623;Parent=Phyra72623;rank=4 scaffold_1 . exon 221283 221450 . + . ID=Phyra72623.4;Parent=Phyra72623;constitutive=1;rank=4 scaffold_1 . CDS 221529 221616 . + 0 ID=Phyra72623;Parent=Phyra72623;rank=5 scaffold_1 . exon 221529 221616 . + . ID=Phyra72623.5;Parent=Phyra72623;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . CDS 221692 221813 . + 0 ID=Phyra72623;Parent=Phyra72623;rank=6 scaffold_1 . exon 221692 221813 . + . ID=Phyra72623.6;Parent=Phyra72623;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 ensembl protein_coding_gene 222225 223627 . - . ID=Phyra72624;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000066;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 222225 223627 . - . ID=Phyra72624;Parent=Phyra72624;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 222225 222704 . - 0 ID=Phyra72624;Parent=Phyra72624;rank=2 scaffold_1 . exon 222225 222704 . - . ID=Phyra72624.2;Parent=Phyra72624;constitutive=1;rank=2 scaffold_1 . CDS 222782 223627 . - 0 ID=Phyra72624;Parent=Phyra72624;rank=1 scaffold_1 . exon 222782 223627 . - . ID=Phyra72624.1;Parent=Phyra72624;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 224302 225755 . - . ID=Phyra72625;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000067;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 224302 225755 . - . ID=Phyra72625;Parent=Phyra72625;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 224302 224367 . - 0 ID=Phyra72625;Parent=Phyra72625;rank=3 scaffold_1 . exon 224302 224367 . - . ID=Phyra72625.3;Parent=Phyra72625;constitutive=1;rank=3 scaffold_1 . CDS 224491 225454 . - 0 ID=Phyra72625;Parent=Phyra72625;rank=2 scaffold_1 . exon 224491 225454 . - . ID=Phyra72625.2;Parent=Phyra72625;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 225700 225755 . - 0 ID=Phyra72625;Parent=Phyra72625;rank=1 scaffold_1 . exon 225700 225755 . - . ID=Phyra72625.1;Parent=Phyra72625;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 226262 226918 . + . ID=Phyra72626;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000068;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 226262 226918 . + . ID=Phyra72626;Parent=Phyra72626;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 226262 226918 . + 0 ID=Phyra72626;Parent=Phyra72626;rank=1 scaffold_1 . exon 226262 226918 . + . ID=Phyra72626.1;Parent=Phyra72626;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 227029 233685 . - . ID=Phyra72627;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000069;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 227029 233685 . - . ID=Phyra72627;Parent=Phyra72627;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 227029 228135 . - 0 ID=Phyra72627;Parent=Phyra72627;rank=2 scaffold_1 . exon 227029 228135 . - . ID=Phyra72627.2;Parent=Phyra72627;constitutive=1;rank=2 scaffold_1 . CDS 228277 233685 . - 0 ID=Phyra72627;Parent=Phyra72627;rank=1 scaffold_1 . exon 228277 233685 . - . ID=Phyra72627.1;Parent=Phyra72627;constitutive=1;rank=1 scaffold_1 . biological_region 235151 235153 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 234761 236116 . - . ID=Phyra72628;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000070;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 234761 236116 . - . ID=Phyra72628;Parent=Phyra72628;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 234761 236116 . - 0 ID=Phyra72628;Parent=Phyra72628;rank=1 scaffold_1 . exon 234761 236116 . - . ID=Phyra72628.1;Parent=Phyra72628;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 238060 240919 . - . ID=Phyra72629;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000071;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 238060 240919 . - . ID=Phyra72629;Parent=Phyra72629;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 238060 238368 . - 0 ID=Phyra72629;Parent=Phyra72629;rank=3 scaffold_1 . exon 238060 238368 . - . ID=Phyra72629.3;Parent=Phyra72629;constitutive=1;rank=3 scaffold_1 . CDS 238606 239261 . - 0 ID=Phyra72629;Parent=Phyra72629;rank=2 scaffold_1 . exon 238606 239261 . - . ID=Phyra72629.2;Parent=Phyra72629;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 239449 240919 . - 0 ID=Phyra72629;Parent=Phyra72629;rank=1 scaffold_1 . repeat_region 239285 239292 . ? . description=dust scaffold_1 . repeat_region 242800 242809 . ? . description=dust scaffold_1 . repeat_region 243405 243414 . ? . description=dust scaffold_1 . repeat_region 248734 248801 . ? . description=dust scaffold_1 . repeat_region 248802 249338 . ? . description=dust scaffold_1 . exon 239449 240919 . - . ID=Phyra72629.1;Parent=Phyra72629;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 241654 242157 . - . ID=Phyra72630;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000072;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 241654 242157 . - . ID=Phyra72630;Parent=Phyra72630;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 241654 242157 . - 0 ID=Phyra72630;Parent=Phyra72630;rank=1 scaffold_1 . exon 241654 242157 . - . ID=Phyra72630.1;Parent=Phyra72630;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 242428 243678 . - . ID=Phyra72631;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000073;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 242428 243678 . - . ID=Phyra72631;Parent=Phyra72631;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 242428 242582 . - 0 ID=Phyra72631;Parent=Phyra72631;rank=5 scaffold_1 . exon 242428 242582 . - . ID=Phyra72631.5;Parent=Phyra72631;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 242637 242764 . - 0 ID=Phyra72631;Parent=Phyra72631;rank=4 scaffold_1 . exon 242637 242764 . - . ID=Phyra72631.4;Parent=Phyra72631;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 243058 243108 . - 0 ID=Phyra72631;Parent=Phyra72631;rank=3 scaffold_1 . exon 243058 243108 . - . ID=Phyra72631.3;Parent=Phyra72631;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1 . CDS 243189 243352 . - 0 ID=Phyra72631;Parent=Phyra72631;rank=2 scaffold_1 . exon 243189 243352 . - . ID=Phyra72631.2;Parent=Phyra72631;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 243439 243678 . - 0 ID=Phyra72631;Parent=Phyra72631;rank=1 scaffold_1 . exon 243439 243678 . - . ID=Phyra72631.1;Parent=Phyra72631;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 243932 245097 . + . ID=Phyra72632;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000074;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 243932 245097 . + . ID=Phyra72632;Parent=Phyra72632;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 243932 244006 . + 0 ID=Phyra72632;Parent=Phyra72632;rank=1 scaffold_1 . exon 243932 244006 . + . ID=Phyra72632.1;Parent=Phyra72632;constitutive=1;rank=1 scaffold_1 . CDS 244076 244106 . + 0 ID=Phyra72632;Parent=Phyra72632;rank=2 scaffold_1 . exon 244076 244106 . + . ID=Phyra72632.2;Parent=Phyra72632;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 244215 244305 . + 0 ID=Phyra72632;Parent=Phyra72632;rank=3 scaffold_1 . exon 244215 244305 . + . ID=Phyra72632.3;Parent=Phyra72632;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1 . CDS 244710 245097 . + 0 ID=Phyra72632;Parent=Phyra72632;rank=4 scaffold_1 . exon 244710 245097 . + . ID=Phyra72632.4;Parent=Phyra72632;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . biological_region 249760 249765 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 257157 258380 . + . ID=Phyra72633;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000075;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 257157 258380 . + . ID=Phyra72633;Parent=Phyra72633;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 257157 257174 . + 0 ID=Phyra72633;Parent=Phyra72633;rank=1 scaffold_1 . exon 257157 257174 . + . ID=Phyra72633.1;Parent=Phyra72633;constitutive=1;rank=1 scaffold_1 . CDS 257237 257349 . + 0 ID=Phyra72633;Parent=Phyra72633;rank=2 scaffold_1 . exon 257237 257349 . + . ID=Phyra72633.2;Parent=Phyra72633;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 257413 257740 . + 0 ID=Phyra72633;Parent=Phyra72633;rank=3 scaffold_1 . exon 257413 257740 . + . ID=Phyra72633.3;Parent=Phyra72633;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 257813 257906 . + 0 ID=Phyra72633;Parent=Phyra72633;rank=4 scaffold_1 . exon 257813 257906 . + . ID=Phyra72633.4;Parent=Phyra72633;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 257970 258060 . + 0 ID=Phyra72633;Parent=Phyra72633;rank=5 scaffold_1 . exon 257970 258060 . + . ID=Phyra72633.5;Parent=Phyra72633;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_1 . CDS 258134 258226 . + 0 ID=Phyra72633;Parent=Phyra72633;rank=6 scaffold_1 . exon 258134 258226 . + . ID=Phyra72633.6;Parent=Phyra72633;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_1 . CDS 258293 258380 . + 0 ID=Phyra72633;Parent=Phyra72633;rank=7 scaffold_1 . exon 258293 258380 . + . ID=Phyra72633.7;Parent=Phyra72633;constitutive=1;ensembl_phase=2;rank=7 scaffold_1 ensembl protein_coding_gene 258585 259832 . - . ID=Phyra93261;biotype=protein_coding;external_name=C_scaffold_1000038;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 258585 259832 . - . ID=Phyra93261;Parent=Phyra93261;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 258585 259832 . - 0 ID=Phyra93261;Parent=Phyra93261;rank=1 scaffold_1 . exon 258585 259832 . - . ID=Phyra93261.1;Parent=Phyra93261;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 260224 261794 . + . ID=Phyra72635;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000077;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 260224 261794 . + . ID=Phyra72635;Parent=Phyra72635;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 260224 260582 . + 0 ID=Phyra72635;Parent=Phyra72635;rank=1 scaffold_1 . exon 260224 260582 . + . ID=Phyra72635.1;Parent=Phyra72635;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 260650 260759 . + 0 ID=Phyra72635;Parent=Phyra72635;rank=2 scaffold_1 . exon 260650 260759 . + . ID=Phyra72635.2;Parent=Phyra72635;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 260833 261794 . + 0 ID=Phyra72635;Parent=Phyra72635;rank=3 scaffold_1 . exon 260833 261794 . + . ID=Phyra72635.3;Parent=Phyra72635;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 ensembl protein_coding_gene 261952 266859 . - . ID=Phyra72636;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000078;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 261952 266859 . - . ID=Phyra72636;Parent=Phyra72636;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 261952 263363 . - 0 ID=Phyra72636;Parent=Phyra72636;rank=4 scaffold_1 . exon 261952 263363 . - . ID=Phyra72636.4;Parent=Phyra72636;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 263442 263506 . - 0 ID=Phyra72636;Parent=Phyra72636;rank=3 scaffold_1 . exon 263442 263506 . - . ID=Phyra72636.3;Parent=Phyra72636;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 263578 263718 . - 0 ID=Phyra72636;Parent=Phyra72636;rank=2 scaffold_1 . exon 263578 263718 . - . ID=Phyra72636.2;Parent=Phyra72636;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 263783 266859 . - 0 ID=Phyra72636;Parent=Phyra72636;rank=1 scaffold_1 . exon 263783 266859 . - . ID=Phyra72636.1;Parent=Phyra72636;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 267123 269154 . + . ID=Phyra72637;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000079;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 267123 269154 . + . ID=Phyra72637;Parent=Phyra72637;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 267123 267305 . + 0 ID=Phyra72637;Parent=Phyra72637;rank=1 scaffold_1 . exon 267123 267305 . + . ID=Phyra72637.1;Parent=Phyra72637;constitutive=1;rank=1 scaffold_1 . CDS 267373 267529 . + 0 ID=Phyra72637;Parent=Phyra72637;rank=2 scaffold_1 . exon 267373 267529 . + . ID=Phyra72637.2;Parent=Phyra72637;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 267614 267675 . + 0 ID=Phyra72637;Parent=Phyra72637;rank=3 scaffold_1 . exon 267614 267675 . + . ID=Phyra72637.3;Parent=Phyra72637;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 267751 267851 . + 0 ID=Phyra72637;Parent=Phyra72637;rank=4 scaffold_1 . exon 267751 267851 . + . ID=Phyra72637.4;Parent=Phyra72637;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 268124 268250 . + 0 ID=Phyra72637;Parent=Phyra72637;rank=5 scaffold_1 . exon 268124 268250 . + . ID=Phyra72637.5;Parent=Phyra72637;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 268315 268407 . + 0 ID=Phyra72637;Parent=Phyra72637;rank=6 scaffold_1 . exon 268315 268407 . + . ID=Phyra72637.6;Parent=Phyra72637;constitutive=1;rank=6 scaffold_1 . CDS 268490 268771 . + 0 ID=Phyra72637;Parent=Phyra72637;rank=7 scaffold_1 . exon 268490 268771 . + . ID=Phyra72637.7;Parent=Phyra72637;constitutive=1;rank=7 scaffold_1 . CDS 268845 268916 . + 0 ID=Phyra72637;Parent=Phyra72637;rank=8 scaffold_1 . CDS 268999 269154 . + 0 ID=Phyra72637;Parent=Phyra72637;rank=9 scaffold_1 . repeat_region 270074 270081 . ? . description=dust scaffold_1 ensembl protein_coding_gene 270123 272144 . + . ID=Phyra71026;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000006;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 270123 272144 . + . ID=Phyra71026;Parent=Phyra71026;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 270123 270302 . + 0 ID=Phyra71026;Parent=Phyra71026;rank=1 scaffold_1 . exon 270123 270302 . + . ID=Phyra71026.1;Parent=Phyra71026;constitutive=1;rank=1 scaffold_1 . CDS 270376 270532 . + 0 ID=Phyra71026;Parent=Phyra71026;rank=2 scaffold_1 . exon 270376 270532 . + . ID=Phyra71026.2;Parent=Phyra71026;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 270607 270668 . + 0 ID=Phyra71026;Parent=Phyra71026;rank=3 scaffold_1 . exon 270607 270668 . + . ID=Phyra71026.3;Parent=Phyra71026;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 270740 270811 . + 0 ID=Phyra71026;Parent=Phyra71026;rank=4 scaffold_1 . exon 270740 270811 . + . ID=Phyra71026.4;Parent=Phyra71026;constitutive=1;rank=4 scaffold_1 . CDS 270882 270968 . + 0 ID=Phyra71026;Parent=Phyra71026;rank=5 scaffold_1 . exon 270882 270968 . + . ID=Phyra71026.5;Parent=Phyra71026;constitutive=1;rank=5 scaffold_1 . CDS 271046 271219 . + 0 ID=Phyra71026;Parent=Phyra71026;rank=6 scaffold_1 . exon 271046 271219 . + . ID=Phyra71026.6;Parent=Phyra71026;constitutive=1;rank=6 scaffold_1 . CDS 271314 271406 . + 0 ID=Phyra71026;Parent=Phyra71026;rank=7 scaffold_1 . exon 271314 271406 . + . ID=Phyra71026.7;Parent=Phyra71026;constitutive=1;rank=7 scaffold_1 . CDS 271484 271765 . + 0 ID=Phyra71026;Parent=Phyra71026;rank=8 scaffold_1 . exon 271484 271765 . + . ID=Phyra71026.8;Parent=Phyra71026;constitutive=1;rank=8 scaffold_1 . CDS 271835 271906 . + 0 ID=Phyra71026;Parent=Phyra71026;rank=9 scaffold_1 . exon 271835 271906 . + . ID=Phyra71026.9;Parent=Phyra71026;constitutive=1;rank=9 scaffold_1 . CDS 271989 272144 . + 0 ID=Phyra71026;Parent=Phyra71026;rank=10 scaffold_1 . exon 271989 272144 . + . ID=Phyra71026.10;Parent=Phyra71026;constitutive=1;rank=10 scaffold_1 ensembl protein_coding_gene 275530 277508 . + . ID=Phyra71027;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000007;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 275530 277508 . + . ID=Phyra71027;Parent=Phyra71027;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 275530 275806 . + 0 ID=Phyra71027;Parent=Phyra71027;rank=1 scaffold_1 . exon 275530 275806 . + . ID=Phyra71027.1;Parent=Phyra71027;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 275842 275877 . + 0 ID=Phyra71027;Parent=Phyra71027;rank=2 scaffold_1 . exon 275842 275877 . + . ID=Phyra71027.2;Parent=Phyra71027;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 275919 276124 . + 0 ID=Phyra71027;Parent=Phyra71027;rank=3 scaffold_1 . exon 275919 276124 . + . ID=Phyra71027.3;Parent=Phyra71027;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 276192 277508 . + 0 ID=Phyra71027;Parent=Phyra71027;rank=4 scaffold_1 . exon 276192 277508 . + . ID=Phyra71027.4;Parent=Phyra71027;constitutive=1;rank=4 scaffold_1 . exon 268845 268916 . + . ID=Phyra72637.8;Parent=Phyra72637;constitutive=1;rank=8 scaffold_1 . exon 268999 269154 . + . ID=Phyra72637.9;Parent=Phyra72637;constitutive=1;rank=9 scaffold_1 ensembl protein_coding_gene 278620 279905 . - . ID=Phyra72642;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000084;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 278620 279905 . - . ID=Phyra72642;Parent=Phyra72642;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 278620 279727 . - 0 ID=Phyra72642;Parent=Phyra72642;rank=2 scaffold_1 . exon 278620 279727 . - . ID=Phyra72642.2;Parent=Phyra72642;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 279877 279905 . - 0 ID=Phyra72642;Parent=Phyra72642;rank=1 scaffold_1 ensembl protein_coding_gene 272484 275342 . - . ID=Phyra93266;biotype=protein_coding;external_name=C_scaffold_1000043;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 272484 275342 . - . ID=Phyra93266;Parent=Phyra93266;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 272484 272549 . - 0 ID=Phyra93266;Parent=Phyra93266;rank=8 scaffold_1 . exon 272484 272549 . - . ID=Phyra93266.8;Parent=Phyra93266;constitutive=1;rank=8 scaffold_1 . CDS 272609 273103 . - 0 ID=Phyra93266;Parent=Phyra93266;rank=7 scaffold_1 . exon 272609 273103 . - . ID=Phyra93266.7;Parent=Phyra93266;constitutive=1;rank=7 scaffold_1 . CDS 273376 273432 . - 0 ID=Phyra93266;Parent=Phyra93266;rank=6 scaffold_1 . exon 273376 273432 . - . ID=Phyra93266.6;Parent=Phyra93266;constitutive=1;rank=6 scaffold_1 . CDS 273513 273797 . - 0 ID=Phyra93266;Parent=Phyra93266;rank=5 scaffold_1 . exon 273513 273797 . - . ID=Phyra93266.5;Parent=Phyra93266;constitutive=1;rank=5 scaffold_1 . CDS 273875 273928 . - 0 ID=Phyra93266;Parent=Phyra93266;rank=4 scaffold_1 . exon 273875 273928 . - . ID=Phyra93266.4;Parent=Phyra93266;constitutive=1;rank=4 scaffold_1 . CDS 274007 274733 . - 0 ID=Phyra93266;Parent=Phyra93266;rank=3 scaffold_1 . exon 274007 274733 . - . ID=Phyra93266.3;Parent=Phyra93266;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 274799 274887 . - 0 ID=Phyra93266;Parent=Phyra93266;rank=2 scaffold_1 . exon 274799 274887 . - . ID=Phyra93266.2;Parent=Phyra93266;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 274968 275342 . - 0 ID=Phyra93266;Parent=Phyra93266;rank=1 scaffold_1 . exon 274968 275342 . - . ID=Phyra93266.1;Parent=Phyra93266;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 277896 278526 . + . ID=Phyra93269;biotype=protein_coding;external_name=C_scaffold_1000046;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 277896 278526 . + . ID=Phyra93269;Parent=Phyra93269;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 277896 277987 . + 0 ID=Phyra93269;Parent=Phyra93269;rank=1 scaffold_1 . exon 277896 277987 . + . ID=Phyra93269.1;Parent=Phyra93269;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 278049 278526 . + 0 ID=Phyra93269;Parent=Phyra93269;rank=2 scaffold_1 . exon 278049 278526 . + . ID=Phyra93269.2;Parent=Phyra93269;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . biological_region 287338 287340 0.999 + . logic_name=eponine scaffold_1 . biological_region 287379 287381 0.999 - . logic_name=eponine scaffold_1 . biological_region 288411 288413 0.999 + . logic_name=eponine scaffold_1 . repeat_region 288481 288516 . ? . description=trf scaffold_1 . repeat_region 288487 288516 . ? . description=trf scaffold_1 . exon 279877 279905 . - . ID=Phyra72642.1;Parent=Phyra72642;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 286149 288567 . - . ID=Phyra72644;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000086;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 286149 288567 . - . ID=Phyra72644;Parent=Phyra72644;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 286149 286433 . - 0 ID=Phyra72644;Parent=Phyra72644;rank=10 scaffold_1 . exon 286149 286433 . - . ID=Phyra72644.10;Parent=Phyra72644;constitutive=1;rank=10 scaffold_1 . CDS 286511 286681 . - 0 ID=Phyra72644;Parent=Phyra72644;rank=9 scaffold_1 . exon 286511 286681 . - . ID=Phyra72644.9;Parent=Phyra72644;constitutive=1;rank=9 scaffold_1 . CDS 286764 286866 . - 0 ID=Phyra72644;Parent=Phyra72644;rank=8 scaffold_1 . exon 286764 286866 . - . ID=Phyra72644.8;Parent=Phyra72644;constitutive=1;ensembl_phase=2;rank=8 scaffold_1 . CDS 286937 287031 . - 0 ID=Phyra72644;Parent=Phyra72644;rank=7 scaffold_1 . exon 286937 287031 . - . ID=Phyra72644.7;Parent=Phyra72644;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_1 . CDS 287102 287560 . - 0 ID=Phyra72644;Parent=Phyra72644;rank=6 scaffold_1 . exon 287102 287560 . - . ID=Phyra72644.6;Parent=Phyra72644;constitutive=1;rank=6 scaffold_1 . CDS 287626 287722 . - 0 ID=Phyra72644;Parent=Phyra72644;rank=5 scaffold_1 . exon 287626 287722 . - . ID=Phyra72644.5;Parent=Phyra72644;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 287780 287933 . - 0 ID=Phyra72644;Parent=Phyra72644;rank=4 scaffold_1 . exon 287780 287933 . - . ID=Phyra72644.4;Parent=Phyra72644;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_1 . CDS 288006 288061 . - 0 ID=Phyra72644;Parent=Phyra72644;rank=3 scaffold_1 . exon 288006 288061 . - . ID=Phyra72644.3;Parent=Phyra72644;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 288139 288285 . - 0 ID=Phyra72644;Parent=Phyra72644;rank=2 scaffold_1 . exon 288139 288285 . - . ID=Phyra72644.2;Parent=Phyra72644;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 288356 288567 . - 0 ID=Phyra72644;Parent=Phyra72644;rank=1 scaffold_1 . exon 288356 288567 . - . ID=Phyra72644.1;Parent=Phyra72644;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 282392 284972 . + . ID=Phyra93270;biotype=protein_coding;external_name=C_scaffold_1000047;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 282392 284972 . + . ID=Phyra93270;Parent=Phyra93270;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 282392 282737 . + 0 ID=Phyra93270;Parent=Phyra93270;rank=1 scaffold_1 . exon 282392 282737 . + . ID=Phyra93270.1;Parent=Phyra93270;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 282951 283118 . + 0 ID=Phyra93270;Parent=Phyra93270;rank=2 scaffold_1 . exon 282951 283118 . + . ID=Phyra93270.2;Parent=Phyra93270;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 283551 284059 . + 0 ID=Phyra93270;Parent=Phyra93270;rank=3 scaffold_1 . exon 283551 284059 . + . ID=Phyra93270.3;Parent=Phyra93270;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 284115 284248 . + 0 ID=Phyra93270;Parent=Phyra93270;rank=4 scaffold_1 . exon 284115 284248 . + . ID=Phyra93270.4;Parent=Phyra93270;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 284311 284424 . + 0 ID=Phyra93270;Parent=Phyra93270;rank=5 scaffold_1 . exon 284311 284424 . + . ID=Phyra93270.5;Parent=Phyra93270;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_1 . CDS 284498 284972 . + 0 ID=Phyra93270;Parent=Phyra93270;rank=6 scaffold_1 . exon 284498 284972 . + . ID=Phyra93270.6;Parent=Phyra93270;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 ensembl protein_coding_gene 294275 294907 . + . ID=Phyra72647;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000089;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 294275 294907 . + . ID=Phyra72647;Parent=Phyra72647;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 294275 294907 . + 0 ID=Phyra72647;Parent=Phyra72647;rank=1 scaffold_1 . exon 294275 294907 . + . ID=Phyra72647.1;Parent=Phyra72647;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 297217 297842 . + . ID=Phyra72648;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000090;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 297217 297842 . + . ID=Phyra72648;Parent=Phyra72648;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 297217 297612 . + 0 ID=Phyra72648;Parent=Phyra72648;rank=1 scaffold_1 . exon 297217 297612 . + . ID=Phyra72648.1;Parent=Phyra72648;constitutive=1;rank=1 scaffold_1 . CDS 297684 297842 . + 0 ID=Phyra72648;Parent=Phyra72648;rank=2 scaffold_1 . exon 297684 297842 . + . ID=Phyra72648.2;Parent=Phyra72648;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 298545 299313 . + . ID=Phyra72649;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000091;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 298545 299313 . + . ID=Phyra72649;Parent=Phyra72649;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 298545 299049 . + 0 ID=Phyra72649;Parent=Phyra72649;rank=1 scaffold_1 . exon 298545 299049 . + . ID=Phyra72649.1;Parent=Phyra72649;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 299129 299313 . + 0 ID=Phyra72649;Parent=Phyra72649;rank=2 scaffold_1 ensembl protein_coding_gene 288838 290274 . + . ID=Phyra93275;biotype=protein_coding;external_name=C_scaffold_1000052;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 288838 290274 . + . ID=Phyra93275;Parent=Phyra93275;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 288838 288900 . + 0 ID=Phyra93275;Parent=Phyra93275;rank=1 scaffold_1 . exon 288838 288900 . + . ID=Phyra93275.1;Parent=Phyra93275;constitutive=1;rank=1 scaffold_1 . CDS 288983 289042 . + 0 ID=Phyra93275;Parent=Phyra93275;rank=2 scaffold_1 . exon 288983 289042 . + . ID=Phyra93275.2;Parent=Phyra93275;constitutive=1;rank=2 scaffold_1 . CDS 289116 289256 . + 0 ID=Phyra93275;Parent=Phyra93275;rank=3 scaffold_1 . exon 289116 289256 . + . ID=Phyra93275.3;Parent=Phyra93275;constitutive=1;rank=3 scaffold_1 . CDS 289328 289379 . + 0 ID=Phyra93275;Parent=Phyra93275;rank=4 scaffold_1 . exon 289328 289379 . + . ID=Phyra93275.4;Parent=Phyra93275;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 289461 289507 . + 0 ID=Phyra93275;Parent=Phyra93275;rank=5 scaffold_1 . exon 289461 289507 . + . ID=Phyra93275.5;Parent=Phyra93275;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 289571 289753 . + 0 ID=Phyra93275;Parent=Phyra93275;rank=6 scaffold_1 . exon 289571 289753 . + . ID=Phyra93275.6;Parent=Phyra93275;constitutive=1;rank=6 scaffold_1 . CDS 289819 290274 . + 0 ID=Phyra93275;Parent=Phyra93275;rank=7 scaffold_1 . exon 289819 290274 . + . ID=Phyra93275.7;Parent=Phyra93275;constitutive=1;rank=7 scaffold_1 ensembl protein_coding_gene 290334 294190 . - . ID=Phyra93277;biotype=protein_coding;external_name=C_scaffold_1000054;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 290334 294190 . - . ID=Phyra93277;Parent=Phyra93277;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 290334 290619 . - 0 ID=Phyra93277;Parent=Phyra93277;rank=11 scaffold_1 . exon 290334 290619 . - . ID=Phyra93277.11;Parent=Phyra93277;constitutive=1;ensembl_phase=2;rank=11 scaffold_1 . CDS 290704 291794 . - 0 ID=Phyra93277;Parent=Phyra93277;rank=10 scaffold_1 . exon 290704 291794 . - . ID=Phyra93277.10;Parent=Phyra93277;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_1 . CDS 291966 292207 . - 0 ID=Phyra93277;Parent=Phyra93277;rank=9 scaffold_1 . exon 291966 292207 . - . ID=Phyra93277.9;Parent=Phyra93277;constitutive=1;ensembl_phase=1;rank=9 scaffold_1 . CDS 292352 292388 . - 0 ID=Phyra93277;Parent=Phyra93277;rank=8 scaffold_1 . exon 292352 292388 . - . ID=Phyra93277.8;Parent=Phyra93277;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_1 . CDS 292460 292626 . - 0 ID=Phyra93277;Parent=Phyra93277;rank=7 scaffold_1 . exon 292460 292626 . - . ID=Phyra93277.7;Parent=Phyra93277;constitutive=1;ensembl_phase=1;rank=7 scaffold_1 . CDS 292903 293067 . - 0 ID=Phyra93277;Parent=Phyra93277;rank=6 scaffold_1 . exon 292903 293067 . - . ID=Phyra93277.6;Parent=Phyra93277;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 293200 293269 . - 0 ID=Phyra93277;Parent=Phyra93277;rank=5 scaffold_1 . exon 293200 293269 . - . ID=Phyra93277.5;Parent=Phyra93277;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . CDS 293336 293380 . - 0 ID=Phyra93277;Parent=Phyra93277;rank=4 scaffold_1 . exon 293336 293380 . - . ID=Phyra93277.4;Parent=Phyra93277;constitutive=1;rank=4 scaffold_1 . CDS 293469 293512 . - 0 ID=Phyra93277;Parent=Phyra93277;rank=3 scaffold_1 . exon 293469 293512 . - . ID=Phyra93277.3;Parent=Phyra93277;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 293666 293894 . - 0 ID=Phyra93277;Parent=Phyra93277;rank=2 scaffold_1 . exon 293666 293894 . - . ID=Phyra93277.2;Parent=Phyra93277;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 293957 294190 . - 0 ID=Phyra93277;Parent=Phyra93277;rank=1 scaffold_1 . exon 293957 294190 . - . ID=Phyra93277.1;Parent=Phyra93277;constitutive=1;rank=1 scaffold_1 . biological_region 298605 298609 0.999 - . logic_name=eponine scaffold_1 . biological_region 298619 298623 0.999 - . logic_name=eponine scaffold_1 . biological_region 298635 298637 0.999 - . logic_name=eponine scaffold_1 . repeat_region 299059 299067 . ? . description=dust scaffold_1 . biological_region 300205 300207 0.999 + . logic_name=eponine scaffold_1 . biological_region 301368 301373 0.999 - . logic_name=eponine scaffold_1 . repeat_region 303870 303877 . ? . description=dust scaffold_1 . biological_region 305623 305623 0.999 + . logic_name=eponine scaffold_1 . repeat_region 307717 307724 . ? . description=dust scaffold_1 . exon 299129 299313 . + . ID=Phyra72649.2;Parent=Phyra72649;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 300760 302301 . + . ID=Phyra72650;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000092;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 300760 302301 . + . ID=Phyra72650;Parent=Phyra72650;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 300760 302301 . + 0 ID=Phyra72650;Parent=Phyra72650;rank=1 scaffold_1 . exon 300760 302301 . + . ID=Phyra72650.1;Parent=Phyra72650;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 304340 306097 . - . ID=Phyra72651;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000093;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 304340 306097 . - . ID=Phyra72651;Parent=Phyra72651;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 304340 306097 . - 0 ID=Phyra72651;Parent=Phyra72651;rank=1 scaffold_1 . exon 304340 306097 . - . ID=Phyra72651.1;Parent=Phyra72651;constitutive=1;rank=1 scaffold_1 . repeat_region 313010 313050 . ? . description=trf scaffold_1 ensembl protein_coding_gene 309293 310177 . - . ID=Phyra72652;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000094;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 309293 310177 . - . ID=Phyra72652;Parent=Phyra72652;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 309293 310177 . - 0 ID=Phyra72652;Parent=Phyra72652;rank=1 scaffold_1 . exon 309293 310177 . - . ID=Phyra72652.1;Parent=Phyra72652;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 310696 312957 . + . ID=Phyra72653;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000095;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 310696 312957 . + . ID=Phyra72653;Parent=Phyra72653;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 310696 310976 . + 0 ID=Phyra72653;Parent=Phyra72653;rank=1 scaffold_1 . exon 310696 310976 . + . ID=Phyra72653.1;Parent=Phyra72653;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 311042 311138 . + 0 ID=Phyra72653;Parent=Phyra72653;rank=2 scaffold_1 . exon 311042 311138 . + . ID=Phyra72653.2;Parent=Phyra72653;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 311186 311350 . + 0 ID=Phyra72653;Parent=Phyra72653;rank=3 scaffold_1 . exon 311186 311350 . + . ID=Phyra72653.3;Parent=Phyra72653;constitutive=1;rank=3 scaffold_1 . CDS 311390 311954 . + 0 ID=Phyra72653;Parent=Phyra72653;rank=4 scaffold_1 . exon 311390 311954 . + . ID=Phyra72653.4;Parent=Phyra72653;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 311998 312413 . + 0 ID=Phyra72653;Parent=Phyra72653;rank=5 scaffold_1 . exon 311998 312413 . + . ID=Phyra72653.5;Parent=Phyra72653;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 312703 312957 . + 0 ID=Phyra72653;Parent=Phyra72653;rank=6 scaffold_1 . exon 312703 312957 . + . ID=Phyra72653.6;Parent=Phyra72653;constitutive=1;rank=6 scaffold_1 ensembl protein_coding_gene 313769 314714 . + . ID=Phyra72654;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000096;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 313769 314714 . + . ID=Phyra72654;Parent=Phyra72654;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 313769 314105 . + 0 ID=Phyra72654;Parent=Phyra72654;rank=1 scaffold_1 . exon 313769 314105 . + . ID=Phyra72654.1;Parent=Phyra72654;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 314147 314263 . + 0 ID=Phyra72654;Parent=Phyra72654;rank=2 scaffold_1 . exon 314147 314263 . + . ID=Phyra72654.2;Parent=Phyra72654;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 314317 314714 . + 0 ID=Phyra72654;Parent=Phyra72654;rank=3 scaffold_1 . exon 314317 314714 . + . ID=Phyra72654.3;Parent=Phyra72654;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . biological_region 321723 321724 0.999 + . logic_name=eponine scaffold_1 . repeat_region 323317 323366 . ? . description=dust scaffold_1 . biological_region 323906 323914 0.999 - . logic_name=eponine scaffold_1 . biological_region 323941 323944 0.999 - . logic_name=eponine scaffold_1 . biological_region 324168 324173 0.999 - . logic_name=eponine scaffold_1 . repeat_region 324477 324654 . ? . description=dust scaffold_1 . biological_region 325440 325443 0.999 - . logic_name=eponine scaffold_1 . biological_region 325945 325946 0.999 - . logic_name=eponine scaffold_1 . biological_region 325982 325985 0.999 - . logic_name=eponine scaffold_1 . biological_region 326061 326062 0.999 + . logic_name=eponine scaffold_1 . biological_region 326088 326089 0.999 + . logic_name=eponine scaffold_1 . biological_region 326204 326206 0.999 - . logic_name=eponine scaffold_1 . biological_region 326335 326335 0.999 + . logic_name=eponine scaffold_1 . biological_region 327084 327086 0.999 - . logic_name=eponine scaffold_1 . biological_region 327119 327124 0.999 - . logic_name=eponine scaffold_1 . biological_region 327138 327144 0.999 + . logic_name=eponine scaffold_1 . biological_region 327378 327379 0.999 - . logic_name=eponine scaffold_1 . biological_region 327584 327591 0.999 + . logic_name=eponine scaffold_1 . biological_region 327627 327632 0.999 - . logic_name=eponine scaffold_1 . repeat_region 327791 327840 . ? . description=dust scaffold_1 . biological_region 327989 327992 0.999 - . logic_name=eponine scaffold_1 . biological_region 328105 328107 0.999 + . logic_name=eponine scaffold_1 . biological_region 328179 328184 0.999 - . logic_name=eponine scaffold_1 . biological_region 328216 328218 0.999 - . logic_name=eponine scaffold_1 . biological_region 328270 328274 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 322479 326679 . + . ID=Phyra72655;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000097;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 322479 326679 . + . ID=Phyra72655;Parent=Phyra72655;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 322479 322901 . + 0 ID=Phyra72655;Parent=Phyra72655;rank=1 scaffold_1 . exon 322479 322901 . + . ID=Phyra72655.1;Parent=Phyra72655;constitutive=1;rank=1 scaffold_1 . CDS 322944 323153 . + 0 ID=Phyra72655;Parent=Phyra72655;rank=2 scaffold_1 . exon 322944 323153 . + . ID=Phyra72655.2;Parent=Phyra72655;constitutive=1;rank=2 scaffold_1 . CDS 323441 324400 . + 0 ID=Phyra72655;Parent=Phyra72655;rank=3 scaffold_1 . exon 323441 324400 . + . ID=Phyra72655.3;Parent=Phyra72655;constitutive=1;rank=3 scaffold_1 . CDS 324709 326679 . + 0 ID=Phyra72655;Parent=Phyra72655;rank=4 scaffold_1 . exon 324709 326679 . + . ID=Phyra72655.4;Parent=Phyra72655;constitutive=1;rank=4 scaffold_1 . repeat_region 329009 329038 . ? . description=trf scaffold_1 ensembl protein_coding_gene 328510 328884 . - . ID=Phyra72656;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000098;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 328510 328884 . - . ID=Phyra72656;Parent=Phyra72656;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 328510 328884 . - 0 ID=Phyra72656;Parent=Phyra72656;rank=1 scaffold_1 . exon 328510 328884 . - . ID=Phyra72656.1;Parent=Phyra72656;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 335985 337559 . + . ID=Phyra72657;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000099;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 335985 337559 . + . ID=Phyra72657;Parent=Phyra72657;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 335985 337559 . + 0 ID=Phyra72657;Parent=Phyra72657;rank=1 scaffold_1 . exon 335985 337559 . + . ID=Phyra72657.1;Parent=Phyra72657;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 338009 339349 . - . ID=Phyra72658;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000100;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 338009 339349 . - . ID=Phyra72658;Parent=Phyra72658;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 338009 338366 . - 0 ID=Phyra72658;Parent=Phyra72658;rank=3 scaffold_1 . exon 338009 338366 . - . ID=Phyra72658.3;Parent=Phyra72658;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 338436 339039 . - 0 ID=Phyra72658;Parent=Phyra72658;rank=2 scaffold_1 . CDS 339175 339349 . - 0 ID=Phyra72658;Parent=Phyra72658;rank=1 scaffold_1 . repeat_region 344921 344929 . ? . description=dust scaffold_1 . exon 338436 339039 . - . ID=Phyra72658.2;Parent=Phyra72658;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . exon 339175 339349 . - . ID=Phyra72658.1;Parent=Phyra72658;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 340099 341649 . - . ID=Phyra72659;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000101;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 340099 341649 . - . ID=Phyra72659;Parent=Phyra72659;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 340099 341649 . - 0 ID=Phyra72659;Parent=Phyra72659;rank=1 scaffold_1 . exon 340099 341649 . - . ID=Phyra72659.1;Parent=Phyra72659;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 343268 349319 . - . ID=Phyra72660;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000102;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 343268 349319 . - . ID=Phyra72660;Parent=Phyra72660;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 343268 343321 . - 0 ID=Phyra72660;Parent=Phyra72660;rank=6 scaffold_1 . exon 343268 343321 . - . ID=Phyra72660.6;Parent=Phyra72660;constitutive=1;rank=6 scaffold_1 . CDS 343459 343588 . - 0 ID=Phyra72660;Parent=Phyra72660;rank=5 scaffold_1 . exon 343459 343588 . - . ID=Phyra72660.5;Parent=Phyra72660;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 343911 344860 . - 0 ID=Phyra72660;Parent=Phyra72660;rank=4 scaffold_1 . exon 343911 344860 . - . ID=Phyra72660.4;Parent=Phyra72660;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 344945 346924 . - 0 ID=Phyra72660;Parent=Phyra72660;rank=3 scaffold_1 . exon 344945 346924 . - . ID=Phyra72660.3;Parent=Phyra72660;constitutive=1;rank=3 scaffold_1 . CDS 347724 347888 . - 0 ID=Phyra72660;Parent=Phyra72660;rank=2 scaffold_1 . exon 347724 347888 . - . ID=Phyra72660.2;Parent=Phyra72660;constitutive=1;rank=2 scaffold_1 . CDS 348252 349319 . - 0 ID=Phyra72660;Parent=Phyra72660;rank=1 scaffold_1 . exon 348252 349319 . - . ID=Phyra72660.1;Parent=Phyra72660;constitutive=1;rank=1 scaffold_1 . biological_region 348833 348835 0.999 - . logic_name=eponine scaffold_1 . biological_region 349090 349092 0.999 - . logic_name=eponine scaffold_1 . biological_region 349145 349148 0.999 + . logic_name=eponine scaffold_1 . biological_region 349178 349183 0.999 + . logic_name=eponine scaffold_1 . biological_region 349208 349214 0.999 + . logic_name=eponine scaffold_1 . repeat_region 349757 349777 . ? . description=trf scaffold_1 . repeat_region 350906 350926 . ? . description=trf scaffold_1 . biological_region 353410 353414 0.999 + . logic_name=eponine scaffold_1 . biological_region 353475 353477 0.999 - . logic_name=eponine scaffold_1 . biological_region 353553 353553 0.999 + . logic_name=eponine scaffold_1 . repeat_region 355255 355292 . ? . description=trf scaffold_1 ensembl protein_coding_gene 352542 353906 . - . ID=Phyra38546;biotype=protein_coding;external_name=gwEuk.1.45.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 352542 353906 . - . ID=Phyra38546;Parent=Phyra38546;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 352542 353906 . - 0 ID=Phyra38546;Parent=Phyra38546;rank=1 scaffold_1 . exon 352542 353906 . - . ID=Phyra38546.1;Parent=Phyra38546;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 350556 352043 . + . ID=Phyra72661;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000103;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 350556 352043 . + . ID=Phyra72661;Parent=Phyra72661;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 350556 352043 . + 0 ID=Phyra72661;Parent=Phyra72661;rank=1 scaffold_1 . exon 350556 352043 . + . ID=Phyra72661.1;Parent=Phyra72661;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 355020 358713 . - . ID=Phyra72663;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000105;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 355020 358713 . - . ID=Phyra72663;Parent=Phyra72663;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 355020 355694 . - 0 ID=Phyra72663;Parent=Phyra72663;rank=3 scaffold_1 . exon 355020 355694 . - . ID=Phyra72663.3;Parent=Phyra72663;constitutive=1;rank=3 scaffold_1 . CDS 355782 356264 . - 0 ID=Phyra72663;Parent=Phyra72663;rank=2 scaffold_1 . exon 355782 356264 . - . ID=Phyra72663.2;Parent=Phyra72663;constitutive=1;rank=2 scaffold_1 . CDS 356347 358713 . - 0 ID=Phyra72663;Parent=Phyra72663;rank=1 scaffold_1 . exon 356347 358713 . - . ID=Phyra72663.1;Parent=Phyra72663;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 359751 361548 . - . ID=Phyra72664;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000106;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 359751 361548 . - . ID=Phyra72664;Parent=Phyra72664;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 359751 359996 . - 0 ID=Phyra72664;Parent=Phyra72664;rank=4 scaffold_1 . exon 359751 359996 . - . ID=Phyra72664.4;Parent=Phyra72664;constitutive=1;rank=4 scaffold_1 . CDS 360087 360427 . - 0 ID=Phyra72664;Parent=Phyra72664;rank=3 scaffold_1 . exon 360087 360427 . - . ID=Phyra72664.3;Parent=Phyra72664;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 360504 360559 . - 0 ID=Phyra72664;Parent=Phyra72664;rank=2 scaffold_1 . exon 360504 360559 . - . ID=Phyra72664.2;Parent=Phyra72664;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 360641 361548 . - 0 ID=Phyra72664;Parent=Phyra72664;rank=1 scaffold_1 . exon 360641 361548 . - . ID=Phyra72664.1;Parent=Phyra72664;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 362608 366173 . + . ID=Phyra72665;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000107;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 362608 366173 . + . ID=Phyra72665;Parent=Phyra72665;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 362608 363289 . + 0 ID=Phyra72665;Parent=Phyra72665;rank=1 scaffold_1 . exon 362608 363289 . + . ID=Phyra72665.1;Parent=Phyra72665;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 363362 363999 . + 0 ID=Phyra72665;Parent=Phyra72665;rank=2 scaffold_1 . exon 363362 363999 . + . ID=Phyra72665.2;Parent=Phyra72665;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 364048 364241 . + 0 ID=Phyra72665;Parent=Phyra72665;rank=3 scaffold_1 . exon 364048 364241 . + . ID=Phyra72665.3;Parent=Phyra72665;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 364608 364825 . + 0 ID=Phyra72665;Parent=Phyra72665;rank=4 scaffold_1 . exon 364608 364825 . + . ID=Phyra72665.4;Parent=Phyra72665;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 364866 365215 . + 0 ID=Phyra72665;Parent=Phyra72665;rank=5 scaffold_1 . exon 364866 365215 . + . ID=Phyra72665.5;Parent=Phyra72665;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 365339 365422 . + 0 ID=Phyra72665;Parent=Phyra72665;rank=6 scaffold_1 . exon 365339 365422 . + . ID=Phyra72665.6;Parent=Phyra72665;constitutive=1;rank=6 scaffold_1 . CDS 365502 366173 . + 0 ID=Phyra72665;Parent=Phyra72665;rank=7 scaffold_1 . exon 365502 366173 . + . ID=Phyra72665.7;Parent=Phyra72665;constitutive=1;rank=7 scaffold_1 ensembl protein_coding_gene 366677 371004 . + . ID=Phyra72666;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000108;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 366677 371004 . + . ID=Phyra72666;Parent=Phyra72666;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 366677 366823 . + 0 ID=Phyra72666;Parent=Phyra72666;rank=1 scaffold_1 . exon 366677 366823 . + . ID=Phyra72666.1;Parent=Phyra72666;constitutive=1;rank=1 scaffold_1 . CDS 366891 366990 . + 0 ID=Phyra72666;Parent=Phyra72666;rank=2 scaffold_1 . exon 366891 366990 . + . ID=Phyra72666.2;Parent=Phyra72666;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 367067 367836 . + 0 ID=Phyra72666;Parent=Phyra72666;rank=3 scaffold_1 . exon 367067 367836 . + . ID=Phyra72666.3;Parent=Phyra72666;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 368020 368122 . + 0 ID=Phyra72666;Parent=Phyra72666;rank=4 scaffold_1 . exon 368020 368122 . + . ID=Phyra72666.4;Parent=Phyra72666;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 368189 368301 . + 0 ID=Phyra72666;Parent=Phyra72666;rank=5 scaffold_1 . exon 368189 368301 . + . ID=Phyra72666.5;Parent=Phyra72666;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 368383 368908 . + 0 ID=Phyra72666;Parent=Phyra72666;rank=6 scaffold_1 . CDS 368982 369025 . + 0 ID=Phyra72666;Parent=Phyra72666;rank=7 scaffold_1 . CDS 369283 369525 . + 0 ID=Phyra72666;Parent=Phyra72666;rank=8 scaffold_1 . CDS 369596 369837 . + 0 ID=Phyra72666;Parent=Phyra72666;rank=9 scaffold_1 . CDS 369899 369967 . + 0 ID=Phyra72666;Parent=Phyra72666;rank=10 scaffold_1 . CDS 370258 370381 . + 0 ID=Phyra72666;Parent=Phyra72666;rank=11 scaffold_1 . CDS 370454 370671 . + 0 ID=Phyra72666;Parent=Phyra72666;rank=12 scaffold_1 . CDS 370754 370924 . + 0 ID=Phyra72666;Parent=Phyra72666;rank=13 scaffold_1 . CDS 370956 371004 . + 0 ID=Phyra72666;Parent=Phyra72666;rank=14 scaffold_1 . repeat_region 370182 370189 . ? . description=dust scaffold_1 . repeat_region 370713 370720 . ? . description=dust scaffold_1 . biological_region 373779 373781 0.999 - . logic_name=eponine scaffold_1 . repeat_region 374715 374744 . ? . description=dust scaffold_1 . repeat_region 375810 375818 . ? . description=dust scaffold_1 . exon 368383 368908 . + . ID=Phyra72666.6;Parent=Phyra72666;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_1 . exon 368982 369025 . + . ID=Phyra72666.7;Parent=Phyra72666;constitutive=1;ensembl_phase=1;rank=7 scaffold_1 . exon 369283 369525 . + . ID=Phyra72666.8;Parent=Phyra72666;constitutive=1;rank=8 scaffold_1 . exon 369596 369837 . + . ID=Phyra72666.9;Parent=Phyra72666;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_1 . exon 369899 369967 . + . ID=Phyra72666.10;Parent=Phyra72666;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_1 . exon 370258 370381 . + . ID=Phyra72666.11;Parent=Phyra72666;constitutive=1;ensembl_phase=2;rank=11 scaffold_1 . exon 370454 370671 . + . ID=Phyra72666.12;Parent=Phyra72666;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_1 . exon 370754 370924 . + . ID=Phyra72666.13;Parent=Phyra72666;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=13 scaffold_1 . exon 370956 371004 . + . ID=Phyra72666.14;Parent=Phyra72666;constitutive=1;ensembl_phase=2;rank=14 scaffold_1 ensembl protein_coding_gene 371076 374213 . - . ID=Phyra72667;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000109;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 371076 374213 . - . ID=Phyra72667;Parent=Phyra72667;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 371076 372545 . - 0 ID=Phyra72667;Parent=Phyra72667;rank=4 scaffold_1 . exon 371076 372545 . - . ID=Phyra72667.4;Parent=Phyra72667;constitutive=1;rank=4 scaffold_1 . CDS 372619 372825 . - 0 ID=Phyra72667;Parent=Phyra72667;rank=3 scaffold_1 . exon 372619 372825 . - . ID=Phyra72667.3;Parent=Phyra72667;constitutive=1;rank=3 scaffold_1 . CDS 373012 373409 . - 0 ID=Phyra72667;Parent=Phyra72667;rank=2 scaffold_1 . exon 373012 373409 . - . ID=Phyra72667.2;Parent=Phyra72667;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 373481 374213 . - 0 ID=Phyra72667;Parent=Phyra72667;rank=1 scaffold_1 . exon 373481 374213 . - . ID=Phyra72667.1;Parent=Phyra72667;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 376977 378240 . - . ID=Phyra72669;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000111;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 376977 378240 . - . ID=Phyra72669;Parent=Phyra72669;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 376977 377534 . - 0 ID=Phyra72669;Parent=Phyra72669;rank=2 scaffold_1 . exon 376977 377534 . - . ID=Phyra72669.2;Parent=Phyra72669;constitutive=1;rank=2 scaffold_1 . CDS 377608 378240 . - 0 ID=Phyra72669;Parent=Phyra72669;rank=1 scaffold_1 . exon 377608 378240 . - . ID=Phyra72669.1;Parent=Phyra72669;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 375048 376612 . + . ID=Phyra93285;biotype=protein_coding;external_name=C_scaffold_1000062;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 375048 376612 . + . ID=Phyra93285;Parent=Phyra93285;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 375048 375175 . + 0 ID=Phyra93285;Parent=Phyra93285;rank=1 scaffold_1 . exon 375048 375175 . + . ID=Phyra93285.1;Parent=Phyra93285;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 375271 375466 . + 0 ID=Phyra93285;Parent=Phyra93285;rank=2 scaffold_1 . exon 375271 375466 . + . ID=Phyra93285.2;Parent=Phyra93285;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 375545 375757 . + 0 ID=Phyra93285;Parent=Phyra93285;rank=3 scaffold_1 . exon 375545 375757 . + . ID=Phyra93285.3;Parent=Phyra93285;constitutive=1;rank=3 scaffold_1 . CDS 375830 375928 . + 0 ID=Phyra93285;Parent=Phyra93285;rank=4 scaffold_1 . exon 375830 375928 . + . ID=Phyra93285.4;Parent=Phyra93285;constitutive=1;rank=4 scaffold_1 . CDS 376013 376292 . + 0 ID=Phyra93285;Parent=Phyra93285;rank=5 scaffold_1 . exon 376013 376292 . + . ID=Phyra93285.5;Parent=Phyra93285;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . CDS 376350 376471 . + 0 ID=Phyra93285;Parent=Phyra93285;rank=6 scaffold_1 . exon 376350 376471 . + . ID=Phyra93285.6;Parent=Phyra93285;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 376547 376612 . + 0 ID=Phyra93285;Parent=Phyra93285;rank=7 scaffold_1 . exon 376547 376612 . + . ID=Phyra93285.7;Parent=Phyra93285;constitutive=1;rank=7 scaffold_1 . repeat_region 380710 380870 . ? . description=trf scaffold_1 ensembl protein_coding_gene 380130 385687 . + . ID=Phyra72670;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000112;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 380130 385687 . + . ID=Phyra72670;Parent=Phyra72670;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 380130 383795 . + 0 ID=Phyra72670;Parent=Phyra72670;rank=1 scaffold_1 . exon 380130 383795 . + . ID=Phyra72670.1;Parent=Phyra72670;constitutive=1;rank=1 scaffold_1 . CDS 383905 383929 . + 0 ID=Phyra72670;Parent=Phyra72670;rank=2 scaffold_1 . exon 383905 383929 . + . ID=Phyra72670.2;Parent=Phyra72670;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 384041 384521 . + 0 ID=Phyra72670;Parent=Phyra72670;rank=3 scaffold_1 . exon 384041 384521 . + . ID=Phyra72670.3;Parent=Phyra72670;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1 . CDS 384604 384747 . + 0 ID=Phyra72670;Parent=Phyra72670;rank=4 scaffold_1 . exon 384604 384747 . + . ID=Phyra72670.4;Parent=Phyra72670;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_1 . CDS 384815 384932 . + 0 ID=Phyra72670;Parent=Phyra72670;rank=5 scaffold_1 . exon 384815 384932 . + . ID=Phyra72670.5;Parent=Phyra72670;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 385003 385074 . + 0 ID=Phyra72670;Parent=Phyra72670;rank=6 scaffold_1 . exon 385003 385074 . + . ID=Phyra72670.6;Parent=Phyra72670;constitutive=1;rank=6 scaffold_1 . CDS 385157 385687 . + 0 ID=Phyra72670;Parent=Phyra72670;rank=7 scaffold_1 . exon 385157 385687 . + . ID=Phyra72670.7;Parent=Phyra72670;constitutive=1;rank=7 scaffold_1 ensembl protein_coding_gene 385806 387839 . - . ID=Phyra72671;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000113;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 385806 387839 . - . ID=Phyra72671;Parent=Phyra72671;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 385806 387839 . - 0 ID=Phyra72671;Parent=Phyra72671;rank=1 scaffold_1 . exon 385806 387839 . - . ID=Phyra72671.1;Parent=Phyra72671;constitutive=1;rank=1 scaffold_1 . repeat_region 391092 391108 . ? . description=dust scaffold_1 . repeat_region 392047 392055 . ? . description=dust scaffold_1 . repeat_region 393039 393047 . ? . description=dust scaffold_1 . biological_region 393281 393283 0.999 + . logic_name=eponine scaffold_1 . biological_region 393358 393359 0.999 - . logic_name=eponine scaffold_1 . biological_region 395757 395759 0.999 - . logic_name=eponine scaffold_1 . repeat_region 395794 395809 . ? . description=dust scaffold_1 . biological_region 396800 396801 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 388889 390928 . + . ID=Phyra72672;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000114;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 388889 390928 . + . ID=Phyra72672;Parent=Phyra72672;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 388889 390928 . + 0 ID=Phyra72672;Parent=Phyra72672;rank=1 scaffold_1 . exon 388889 390928 . + . ID=Phyra72672.1;Parent=Phyra72672;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 393436 397939 . + . ID=Phyra93290;biotype=protein_coding;external_name=C_scaffold_1000067;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 393436 397939 . + . ID=Phyra93290;Parent=Phyra93290;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 393436 394602 . + 0 ID=Phyra93290;Parent=Phyra93290;rank=1 scaffold_1 . exon 393436 394602 . + . ID=Phyra93290.1;Parent=Phyra93290;constitutive=1;rank=1 scaffold_1 . CDS 394714 395361 . + 0 ID=Phyra93290;Parent=Phyra93290;rank=2 scaffold_1 . exon 394714 395361 . + . ID=Phyra93290.2;Parent=Phyra93290;constitutive=1;rank=2 scaffold_1 . CDS 396143 396429 . + 0 ID=Phyra93290;Parent=Phyra93290;rank=3 scaffold_1 . exon 396143 396429 . + . ID=Phyra93290.3;Parent=Phyra93290;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 396478 396562 . + 0 ID=Phyra93290;Parent=Phyra93290;rank=4 scaffold_1 . exon 396478 396562 . + . ID=Phyra93290.4;Parent=Phyra93290;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 396611 396931 . + 0 ID=Phyra93290;Parent=Phyra93290;rank=5 scaffold_1 . exon 396611 396931 . + . ID=Phyra93290.5;Parent=Phyra93290;constitutive=1;rank=5 scaffold_1 . CDS 397004 397186 . + 0 ID=Phyra93290;Parent=Phyra93290;rank=6 scaffold_1 . exon 397004 397186 . + . ID=Phyra93290.6;Parent=Phyra93290;constitutive=1;rank=6 scaffold_1 . CDS 397208 397474 . + 0 ID=Phyra93290;Parent=Phyra93290;rank=7 scaffold_1 . exon 397208 397474 . + . ID=Phyra93290.7;Parent=Phyra93290;constitutive=1;rank=7 scaffold_1 . CDS 397532 397939 . + 0 ID=Phyra93290;Parent=Phyra93290;rank=8 scaffold_1 . exon 397532 397939 . + . ID=Phyra93290.8;Parent=Phyra93290;constitutive=1;rank=8 scaffold_1 ensembl protein_coding_gene 399063 403085 . + . ID=Phyra72675;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000117;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 399063 403085 . + . ID=Phyra72675;Parent=Phyra72675;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 399063 399376 . + 0 ID=Phyra72675;Parent=Phyra72675;rank=1 scaffold_1 . exon 399063 399376 . + . ID=Phyra72675.1;Parent=Phyra72675;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 399458 403085 . + 0 ID=Phyra72675;Parent=Phyra72675;rank=2 scaffold_1 . exon 399458 403085 . + . ID=Phyra72675.2;Parent=Phyra72675;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 ensembl protein_coding_gene 403608 405077 . - . ID=Phyra72676;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000118;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 403608 405077 . - . ID=Phyra72676;Parent=Phyra72676;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 403608 403816 . - 0 ID=Phyra72676;Parent=Phyra72676;rank=5 scaffold_1 . exon 403608 403816 . - . ID=Phyra72676.5;Parent=Phyra72676;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 403896 404310 . - 0 ID=Phyra72676;Parent=Phyra72676;rank=4 scaffold_1 . exon 403896 404310 . - . ID=Phyra72676.4;Parent=Phyra72676;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 404366 404417 . - 0 ID=Phyra72676;Parent=Phyra72676;rank=3 scaffold_1 . exon 404366 404417 . - . ID=Phyra72676.3;Parent=Phyra72676;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 404496 404632 . - 0 ID=Phyra72676;Parent=Phyra72676;rank=2 scaffold_1 . exon 404496 404632 . - . ID=Phyra72676.2;Parent=Phyra72676;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 404697 405077 . - 0 ID=Phyra72676;Parent=Phyra72676;rank=1 scaffold_1 . exon 404697 405077 . - . ID=Phyra72676.1;Parent=Phyra72676;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 405373 406963 . + . ID=Phyra72677;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000119;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 405373 406963 . + . ID=Phyra72677;Parent=Phyra72677;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 405373 405669 . + 0 ID=Phyra72677;Parent=Phyra72677;rank=1 scaffold_1 . exon 405373 405669 . + . ID=Phyra72677.1;Parent=Phyra72677;constitutive=1;rank=1 scaffold_1 . CDS 405746 405966 . + 0 ID=Phyra72677;Parent=Phyra72677;rank=2 scaffold_1 . exon 405746 405966 . + . ID=Phyra72677.2;Parent=Phyra72677;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 406048 406246 . + 0 ID=Phyra72677;Parent=Phyra72677;rank=3 scaffold_1 . exon 406048 406246 . + . ID=Phyra72677.3;Parent=Phyra72677;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 406309 406428 . + 0 ID=Phyra72677;Parent=Phyra72677;rank=4 scaffold_1 . exon 406309 406428 . + . ID=Phyra72677.4;Parent=Phyra72677;constitutive=1;rank=4 scaffold_1 . CDS 406520 406766 . + 0 ID=Phyra72677;Parent=Phyra72677;rank=5 scaffold_1 . exon 406520 406766 . + . ID=Phyra72677.5;Parent=Phyra72677;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . CDS 406820 406824 . + 0 ID=Phyra72677;Parent=Phyra72677;rank=6 scaffold_1 . exon 406820 406824 . + . ID=Phyra72677.6;Parent=Phyra72677;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 406847 406963 . + 0 ID=Phyra72677;Parent=Phyra72677;rank=7 scaffold_1 . exon 406847 406963 . + . ID=Phyra72677.7;Parent=Phyra72677;constitutive=1;rank=7 scaffold_1 ensembl protein_coding_gene 407522 409564 . + . ID=Phyra72678;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000120;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 407522 409564 . + . ID=Phyra72678;Parent=Phyra72678;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 407522 407656 . + 0 ID=Phyra72678;Parent=Phyra72678;rank=1 scaffold_1 . exon 407522 407656 . + . ID=Phyra72678.1;Parent=Phyra72678;constitutive=1;rank=1 scaffold_1 . CDS 407729 408904 . + 0 ID=Phyra72678;Parent=Phyra72678;rank=2 scaffold_1 . exon 407729 408904 . + . ID=Phyra72678.2;Parent=Phyra72678;constitutive=1;rank=2 scaffold_1 . CDS 409046 409406 . + 0 ID=Phyra72678;Parent=Phyra72678;rank=3 scaffold_1 . CDS 409542 409564 . + 0 ID=Phyra72678;Parent=Phyra72678;rank=4 scaffold_1 . biological_region 414258 414260 0.999 - . logic_name=eponine scaffold_1 . repeat_region 414589 414724 . ? . description=trf scaffold_1 . repeat_region 414739 414792 . ? . description=trf scaffold_1 . repeat_region 415244 415301 . ? . description=trf scaffold_1 . repeat_region 416452 416469 . ? . description=dust scaffold_1 . repeat_region 417441 417487 . ? . description=dust scaffold_1 . repeat_region 417442 417481 . ? . description=trf scaffold_1 ensembl protein_coding_gene 409754 410887 . - . ID=Phyra71029;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000009;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 409754 410887 . - . ID=Phyra71029;Parent=Phyra71029;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 409754 410436 . - 0 ID=Phyra71029;Parent=Phyra71029;rank=2 scaffold_1 . exon 409754 410436 . - . ID=Phyra71029.2;Parent=Phyra71029;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 410479 410887 . - 0 ID=Phyra71029;Parent=Phyra71029;rank=1 scaffold_1 . exon 410479 410887 . - . ID=Phyra71029.1;Parent=Phyra71029;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . exon 409046 409406 . + . ID=Phyra72678.3;Parent=Phyra72678;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . exon 409542 409564 . + . ID=Phyra72678.4;Parent=Phyra72678;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 ensembl protein_coding_gene 411438 415946 . - . ID=Phyra72680;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000122;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 411438 415946 . - . ID=Phyra72680;Parent=Phyra72680;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 411438 415946 . - 0 ID=Phyra72680;Parent=Phyra72680;rank=1 scaffold_1 . exon 411438 415946 . - . ID=Phyra72680.1;Parent=Phyra72680;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 417904 418781 . + . ID=Phyra72681;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000123;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 417904 418781 . + . ID=Phyra72681;Parent=Phyra72681;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 417904 417954 . + 0 ID=Phyra72681;Parent=Phyra72681;rank=1 scaffold_1 . exon 417904 417954 . + . ID=Phyra72681.1;Parent=Phyra72681;constitutive=1;rank=1 scaffold_1 . CDS 418105 418251 . + 0 ID=Phyra72681;Parent=Phyra72681;rank=2 scaffold_1 . CDS 418320 418385 . + 0 ID=Phyra72681;Parent=Phyra72681;rank=3 scaffold_1 . CDS 418453 418594 . + 0 ID=Phyra72681;Parent=Phyra72681;rank=4 scaffold_1 . CDS 418669 418781 . + 0 ID=Phyra72681;Parent=Phyra72681;rank=5 scaffold_1 . exon 418105 418251 . + . ID=Phyra72681.2;Parent=Phyra72681;constitutive=1;rank=2 scaffold_1 . exon 418320 418385 . + . ID=Phyra72681.3;Parent=Phyra72681;constitutive=1;rank=3 scaffold_1 . exon 418453 418594 . + . ID=Phyra72681.4;Parent=Phyra72681;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . exon 418669 418781 . + . ID=Phyra72681.5;Parent=Phyra72681;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 ensembl protein_coding_gene 418890 421574 . - . ID=Phyra72682;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000124;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 418890 421574 . - . ID=Phyra72682;Parent=Phyra72682;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 418890 421574 . - 0 ID=Phyra72682;Parent=Phyra72682;rank=1 scaffold_1 . exon 418890 421574 . - . ID=Phyra72682.1;Parent=Phyra72682;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 427399 428335 . + . ID=Phyra72683;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000125;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 427399 428335 . + . ID=Phyra72683;Parent=Phyra72683;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 427399 427492 . + 0 ID=Phyra72683;Parent=Phyra72683;rank=1 scaffold_1 . exon 427399 427492 . + . ID=Phyra72683.1;Parent=Phyra72683;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 427563 428335 . + 0 ID=Phyra72683;Parent=Phyra72683;rank=2 scaffold_1 . exon 427563 428335 . + . ID=Phyra72683.2;Parent=Phyra72683;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . repeat_region 428748 428755 . ? . description=dust scaffold_1 . repeat_region 435403 435451 . ? . description=trf scaffold_1 . repeat_region 435446 435691 . ? . description=trf scaffold_1 ensembl protein_coding_gene 433068 436238 . - . ID=Phyra72684;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000126;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 433068 436238 . - . ID=Phyra72684;Parent=Phyra72684;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 433068 436238 . - 0 ID=Phyra72684;Parent=Phyra72684;rank=1 scaffold_1 . exon 433068 436238 . - . ID=Phyra72684.1;Parent=Phyra72684;constitutive=1;rank=1 scaffold_1 . biological_region 438115 438117 0.999 + . logic_name=eponine scaffold_1 . biological_region 438453 438455 0.999 + . logic_name=eponine scaffold_1 . biological_region 438509 438511 0.999 + . logic_name=eponine scaffold_1 . biological_region 439388 439393 0.999 - . logic_name=eponine scaffold_1 . biological_region 444242 444242 0.999 + . logic_name=eponine scaffold_1 . biological_region 446371 446373 0.999 - . logic_name=eponine scaffold_1 . biological_region 446427 446429 0.999 - . logic_name=eponine scaffold_1 . biological_region 446765 446767 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 437943 439061 . - . ID=Phyra72685;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000127;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 437943 439061 . - . ID=Phyra72685;Parent=Phyra72685;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 437943 439061 . - 0 ID=Phyra72685;Parent=Phyra72685;rank=1 scaffold_1 . exon 437943 439061 . - . ID=Phyra72685.1;Parent=Phyra72685;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 442277 444103 . - . ID=Phyra72686;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000128;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 442277 444103 . - . ID=Phyra72686;Parent=Phyra72686;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 442277 444103 . - 0 ID=Phyra72686;Parent=Phyra72686;rank=1 scaffold_1 . exon 442277 444103 . - . ID=Phyra72686.1;Parent=Phyra72686;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 444270 446938 . + . ID=Phyra72687;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000129;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 444270 446938 . + . ID=Phyra72687;Parent=Phyra72687;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 444270 444405 . + 0 ID=Phyra72687;Parent=Phyra72687;rank=1 scaffold_1 . exon 444270 444405 . + . ID=Phyra72687.1;Parent=Phyra72687;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 444469 444550 . + 0 ID=Phyra72687;Parent=Phyra72687;rank=2 scaffold_1 . exon 444469 444550 . + . ID=Phyra72687.2;Parent=Phyra72687;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 444594 444686 . + 0 ID=Phyra72687;Parent=Phyra72687;rank=3 scaffold_1 . exon 444594 444686 . + . ID=Phyra72687.3;Parent=Phyra72687;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1 . CDS 444765 444909 . + 0 ID=Phyra72687;Parent=Phyra72687;rank=4 scaffold_1 . exon 444765 444909 . + . ID=Phyra72687.4;Parent=Phyra72687;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 445091 445221 . + 0 ID=Phyra72687;Parent=Phyra72687;rank=5 scaffold_1 . exon 445091 445221 . + . ID=Phyra72687.5;Parent=Phyra72687;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_1 . CDS 445496 445632 . + 0 ID=Phyra72687;Parent=Phyra72687;rank=6 scaffold_1 . exon 445496 445632 . + . ID=Phyra72687.6;Parent=Phyra72687;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_1 . CDS 445776 446938 . + 0 ID=Phyra72687;Parent=Phyra72687;rank=7 scaffold_1 . exon 445776 446938 . + . ID=Phyra72687.7;Parent=Phyra72687;constitutive=1;ensembl_phase=1;rank=7 scaffold_1 . repeat_region 448676 448714 . ? . description=dust scaffold_1 . repeat_region 455686 455770 . ? . description=trf scaffold_1 . repeat_region 455695 455756 . ? . description=dust scaffold_1 . repeat_region 455797 455906 . ? . description=trf scaffold_1 ensembl protein_coding_gene 452620 456497 . - . ID=Phyra72688;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000130;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 452620 456497 . - . ID=Phyra72688;Parent=Phyra72688;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 452620 453155 . - 0 ID=Phyra72688;Parent=Phyra72688;rank=2 scaffold_1 . exon 452620 453155 . - . ID=Phyra72688.2;Parent=Phyra72688;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 453203 456497 . - 0 ID=Phyra72688;Parent=Phyra72688;rank=1 scaffold_1 . exon 453203 456497 . - . ID=Phyra72688.1;Parent=Phyra72688;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 457051 460353 . - . ID=Phyra72689;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000131;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 457051 460353 . - . ID=Phyra72689;Parent=Phyra72689;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 457051 460353 . - 0 ID=Phyra72689;Parent=Phyra72689;rank=1 scaffold_1 . exon 457051 460353 . - . ID=Phyra72689.1;Parent=Phyra72689;constitutive=1;rank=1 scaffold_1 . biological_region 465345 465350 0.999 + . logic_name=eponine scaffold_1 . biological_region 465446 465451 0.999 + . logic_name=eponine scaffold_1 . biological_region 466370 466370 0.999 + . logic_name=eponine scaffold_1 . biological_region 466457 466460 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 461291 464788 . - . ID=Phyra72690;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000132;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 461291 464788 . - . ID=Phyra72690;Parent=Phyra72690;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 461291 464788 . - 0 ID=Phyra72690;Parent=Phyra72690;rank=1 scaffold_1 . exon 461291 464788 . - . ID=Phyra72690.1;Parent=Phyra72690;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 466342 467452 . + . ID=Phyra72691;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000133;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 466342 467452 . + . ID=Phyra72691;Parent=Phyra72691;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 466342 466815 . + 0 ID=Phyra72691;Parent=Phyra72691;rank=1 scaffold_1 . exon 466342 466815 . + . ID=Phyra72691.1;Parent=Phyra72691;constitutive=1;rank=1 scaffold_1 . CDS 467213 467452 . + 0 ID=Phyra72691;Parent=Phyra72691;rank=2 scaffold_1 . exon 467213 467452 . + . ID=Phyra72691.2;Parent=Phyra72691;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 467724 468808 . - . ID=Phyra93292;biotype=protein_coding;external_name=C_scaffold_1000069;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 467724 468808 . - . ID=Phyra93292;Parent=Phyra93292;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 467724 467755 . - 0 ID=Phyra93292;Parent=Phyra93292;rank=4 scaffold_1 . exon 467724 467755 . - . ID=Phyra93292.4;Parent=Phyra93292;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 467778 467977 . - 0 ID=Phyra93292;Parent=Phyra93292;rank=3 scaffold_1 . exon 467778 467977 . - . ID=Phyra93292.3;Parent=Phyra93292;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 468040 468164 . - 0 ID=Phyra93292;Parent=Phyra93292;rank=2 scaffold_1 . CDS 468359 468808 . - 0 ID=Phyra93292;Parent=Phyra93292;rank=1 scaffold_1 . repeat_region 475434 475475 . ? . description=trf scaffold_1 . repeat_region 475455 475510 . ? . description=trf scaffold_1 . repeat_region 475497 475516 . ? . description=trf scaffold_1 . repeat_region 475635 475775 . ? . description=trf scaffold_1 . repeat_region 475671 475747 . ? . description=trf scaffold_1 . repeat_region 476912 476961 . ? . description=dust scaffold_1 ensembl protein_coding_gene 472247 473756 . - . ID=Phyra72693;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000135;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 472247 473756 . - . ID=Phyra72693;Parent=Phyra72693;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 472247 473107 . - 0 ID=Phyra72693;Parent=Phyra72693;rank=2 scaffold_1 . exon 472247 473107 . - . ID=Phyra72693.2;Parent=Phyra72693;constitutive=1;rank=2 scaffold_1 . CDS 473172 473756 . - 0 ID=Phyra72693;Parent=Phyra72693;rank=1 scaffold_1 . exon 473172 473756 . - . ID=Phyra72693.1;Parent=Phyra72693;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 474195 476741 . + . ID=Phyra72694;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000136;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 474195 476741 . + . ID=Phyra72694;Parent=Phyra72694;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 474195 476741 . + 0 ID=Phyra72694;Parent=Phyra72694;rank=1 scaffold_1 . exon 474195 476741 . + . ID=Phyra72694.1;Parent=Phyra72694;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 477032 479302 . - . ID=Phyra72695;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000137;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 477032 479302 . - . ID=Phyra72695;Parent=Phyra72695;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 477032 477965 . - 0 ID=Phyra72695;Parent=Phyra72695;rank=2 scaffold_1 . exon 477032 477965 . - . ID=Phyra72695.2;Parent=Phyra72695;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 478272 479302 . - 0 ID=Phyra72695;Parent=Phyra72695;rank=1 scaffold_1 . exon 468040 468164 . - . ID=Phyra93292.2;Parent=Phyra93292;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . exon 468359 468808 . - . ID=Phyra93292.1;Parent=Phyra93292;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 470133 472066 . + . ID=Phyra93295;biotype=protein_coding;external_name=C_scaffold_1000072;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 470133 472066 . + . ID=Phyra93295;Parent=Phyra93295;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 470133 470426 . + 0 ID=Phyra93295;Parent=Phyra93295;rank=1 scaffold_1 . exon 470133 470426 . + . ID=Phyra93295.1;Parent=Phyra93295;constitutive=1;rank=1 scaffold_1 . CDS 470511 470976 . + 0 ID=Phyra93295;Parent=Phyra93295;rank=2 scaffold_1 . exon 470511 470976 . + . ID=Phyra93295.2;Parent=Phyra93295;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 471047 471281 . + 0 ID=Phyra93295;Parent=Phyra93295;rank=3 scaffold_1 . exon 471047 471281 . + . ID=Phyra93295.3;Parent=Phyra93295;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1 . CDS 471363 471400 . + 0 ID=Phyra93295;Parent=Phyra93295;rank=4 scaffold_1 . exon 471363 471400 . + . ID=Phyra93295.4;Parent=Phyra93295;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 471587 471692 . + 0 ID=Phyra93295;Parent=Phyra93295;rank=5 scaffold_1 . exon 471587 471692 . + . ID=Phyra93295.5;Parent=Phyra93295;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_1 . CDS 471772 472066 . + 0 ID=Phyra93295;Parent=Phyra93295;rank=6 scaffold_1 . exon 471772 472066 . + . ID=Phyra93295.6;Parent=Phyra93295;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 . biological_region 480339 480340 0.999 - . logic_name=eponine scaffold_1 . biological_region 481937 481938 0.999 - . logic_name=eponine scaffold_1 . exon 478272 479302 . - . ID=Phyra72695.1;Parent=Phyra72695;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 479619 480587 . - . ID=Phyra72696;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000138;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 479619 480587 . - . ID=Phyra72696;Parent=Phyra72696;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 479619 480587 . - 0 ID=Phyra72696;Parent=Phyra72696;rank=1 scaffold_1 . exon 479619 480587 . - . ID=Phyra72696.1;Parent=Phyra72696;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 481759 483105 . - . ID=Phyra72697;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000139;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 481759 483105 . - . ID=Phyra72697;Parent=Phyra72697;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 481759 482451 . - 0 ID=Phyra72697;Parent=Phyra72697;rank=2 scaffold_1 . exon 481759 482451 . - . ID=Phyra72697.2;Parent=Phyra72697;constitutive=1;rank=2 scaffold_1 . CDS 482536 483105 . - 0 ID=Phyra72697;Parent=Phyra72697;rank=1 scaffold_1 . exon 482536 483105 . - . ID=Phyra72697.1;Parent=Phyra72697;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 485302 486388 . + . ID=Phyra72699;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000141;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 485302 486388 . + . ID=Phyra72699;Parent=Phyra72699;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 485302 485433 . + 0 ID=Phyra72699;Parent=Phyra72699;rank=1 scaffold_1 . exon 485302 485433 . + . ID=Phyra72699.1;Parent=Phyra72699;constitutive=1;rank=1 scaffold_1 . CDS 485501 486388 . + 0 ID=Phyra72699;Parent=Phyra72699;rank=2 scaffold_1 . exon 485501 486388 . + . ID=Phyra72699.2;Parent=Phyra72699;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 486900 489288 . - . ID=Phyra72700;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000142;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 486900 489288 . - . ID=Phyra72700;Parent=Phyra72700;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 486900 487934 . - 0 ID=Phyra72700;Parent=Phyra72700;rank=2 scaffold_1 . exon 486900 487934 . - . ID=Phyra72700.2;Parent=Phyra72700;constitutive=1;rank=2 scaffold_1 . CDS 488077 489288 . - 0 ID=Phyra72700;Parent=Phyra72700;rank=1 scaffold_1 ensembl protein_coding_gene 483538 484196 . + . ID=Phyra93301;biotype=protein_coding;external_name=C_scaffold_1000078;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 483538 484196 . + . ID=Phyra93301;Parent=Phyra93301;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 483538 483871 . + 0 ID=Phyra93301;Parent=Phyra93301;rank=1 scaffold_1 . exon 483538 483871 . + . ID=Phyra93301.1;Parent=Phyra93301;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 483952 484196 . + 0 ID=Phyra93301;Parent=Phyra93301;rank=2 scaffold_1 . exon 483952 484196 . + . ID=Phyra93301.2;Parent=Phyra93301;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . repeat_region 487977 488057 . ? . description=dust scaffold_1 . repeat_region 488726 488776 . ? . description=dust scaffold_1 . exon 488077 489288 . - . ID=Phyra72700.1;Parent=Phyra72700;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 489813 491399 . - . ID=Phyra72701;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000143;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 489813 491399 . - . ID=Phyra72701;Parent=Phyra72701;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 489813 491399 . - 0 ID=Phyra72701;Parent=Phyra72701;rank=1 scaffold_1 . exon 489813 491399 . - . ID=Phyra72701.1;Parent=Phyra72701;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 492145 493183 . + . ID=Phyra72702;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000144;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 492145 493183 . + . ID=Phyra72702;Parent=Phyra72702;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 492145 492807 . + 0 ID=Phyra72702;Parent=Phyra72702;rank=1 scaffold_1 . exon 492145 492807 . + . ID=Phyra72702.1;Parent=Phyra72702;constitutive=1;rank=1 scaffold_1 . CDS 492953 493183 . + 0 ID=Phyra72702;Parent=Phyra72702;rank=2 scaffold_1 . exon 492953 493183 . + . ID=Phyra72702.2;Parent=Phyra72702;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 493419 494081 . - . ID=Phyra72703;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000145;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 493419 494081 . - . ID=Phyra72703;Parent=Phyra72703;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 493419 494081 . - 0 ID=Phyra72703;Parent=Phyra72703;rank=1 scaffold_1 . exon 493419 494081 . - . ID=Phyra72703.1;Parent=Phyra72703;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 495966 497163 . + . ID=Phyra72704;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000146;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 495966 497163 . + . ID=Phyra72704;Parent=Phyra72704;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 495966 496291 . + 0 ID=Phyra72704;Parent=Phyra72704;rank=1 scaffold_1 . exon 495966 496291 . + . ID=Phyra72704.1;Parent=Phyra72704;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 496371 496440 . + 0 ID=Phyra72704;Parent=Phyra72704;rank=2 scaffold_1 . exon 496371 496440 . + . ID=Phyra72704.2;Parent=Phyra72704;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 496507 497163 . + 0 ID=Phyra72704;Parent=Phyra72704;rank=3 scaffold_1 . exon 496507 497163 . + . ID=Phyra72704.3;Parent=Phyra72704;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 497233 498623 . - . ID=Phyra72705;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000147;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 497233 498623 . - . ID=Phyra72705;Parent=Phyra72705;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 497233 497278 . - 0 ID=Phyra72705;Parent=Phyra72705;rank=6 scaffold_1 . exon 497233 497278 . - . ID=Phyra72705.6;Parent=Phyra72705;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 . CDS 497303 497709 . - 0 ID=Phyra72705;Parent=Phyra72705;rank=5 scaffold_1 . exon 497303 497709 . - . ID=Phyra72705.5;Parent=Phyra72705;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_1 . CDS 497783 498082 . - 0 ID=Phyra72705;Parent=Phyra72705;rank=4 scaffold_1 . CDS 498201 498245 . - 0 ID=Phyra72705;Parent=Phyra72705;rank=3 scaffold_1 . CDS 498343 498448 . - 0 ID=Phyra72705;Parent=Phyra72705;rank=2 scaffold_1 . CDS 498538 498623 . - 0 ID=Phyra72705;Parent=Phyra72705;rank=1 scaffold_1 . repeat_region 497928 498015 . ? . description=trf scaffold_1 . biological_region 498519 498519 0.999 + . logic_name=eponine scaffold_1 . biological_region 505461 505466 0.999 + . logic_name=eponine scaffold_1 . repeat_region 507579 507620 . ? . description=trf scaffold_1 ensembl protein_coding_gene 506386 508677 . + . ID=Phyra38571;biotype=protein_coding;external_name=gwEuk.1.70.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 506386 508677 . + . ID=Phyra38571;Parent=Phyra38571;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 506386 507032 . + 0 ID=Phyra38571;Parent=Phyra38571;rank=1 scaffold_1 . exon 506386 507032 . + . ID=Phyra38571.1;Parent=Phyra38571;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 507102 507234 . + 0 ID=Phyra38571;Parent=Phyra38571;rank=2 scaffold_1 . exon 507102 507234 . + . ID=Phyra38571.2;Parent=Phyra38571;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 508096 508677 . + 0 ID=Phyra38571;Parent=Phyra38571;rank=3 scaffold_1 . exon 497783 498082 . - . ID=Phyra72705.4;Parent=Phyra72705;constitutive=1;rank=4 scaffold_1 . exon 498201 498245 . - . ID=Phyra72705.3;Parent=Phyra72705;constitutive=1;rank=3 scaffold_1 . exon 498343 498448 . - . ID=Phyra72705.2;Parent=Phyra72705;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . exon 498538 498623 . - . ID=Phyra72705.1;Parent=Phyra72705;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 498822 500015 . + . ID=Phyra72706;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000148;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 498822 500015 . + . ID=Phyra72706;Parent=Phyra72706;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 498822 500015 . + 0 ID=Phyra72706;Parent=Phyra72706;rank=1 scaffold_1 . exon 498822 500015 . + . ID=Phyra72706.1;Parent=Phyra72706;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 504290 505651 . + . ID=Phyra72707;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000149;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 504290 505651 . + . ID=Phyra72707;Parent=Phyra72707;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 504290 505651 . + 0 ID=Phyra72707;Parent=Phyra72707;rank=1 scaffold_1 . exon 504290 505651 . + . ID=Phyra72707.1;Parent=Phyra72707;constitutive=1;rank=1 scaffold_1 . repeat_region 509534 509553 . ? . description=dust scaffold_1 . exon 508096 508677 . + . ID=Phyra38571.3;Parent=Phyra38571;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 514212 515354 . + . ID=Phyra71031;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000011;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 514212 515354 . + . ID=Phyra71031;Parent=Phyra71031;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 514212 515354 . + 0 ID=Phyra71031;Parent=Phyra71031;rank=1 scaffold_1 . exon 514212 515354 . + . ID=Phyra71031.1;Parent=Phyra71031;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 509124 510436 . + . ID=Phyra72710;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000152;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 509124 510436 . + . ID=Phyra72710;Parent=Phyra72710;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 509124 509178 . + 0 ID=Phyra72710;Parent=Phyra72710;rank=1 scaffold_1 . exon 509124 509178 . + . ID=Phyra72710.1;Parent=Phyra72710;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 509250 509345 . + 0 ID=Phyra72710;Parent=Phyra72710;rank=2 scaffold_1 . exon 509250 509345 . + . ID=Phyra72710.2;Parent=Phyra72710;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 509412 510436 . + 0 ID=Phyra72710;Parent=Phyra72710;rank=3 scaffold_1 . exon 509412 510436 . + . ID=Phyra72710.3;Parent=Phyra72710;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 ensembl protein_coding_gene 510594 512969 . + . ID=Phyra72711;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000153;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 510594 512969 . + . ID=Phyra72711;Parent=Phyra72711;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 510594 511660 . + 0 ID=Phyra72711;Parent=Phyra72711;rank=1 scaffold_1 . exon 510594 511660 . + . ID=Phyra72711.1;Parent=Phyra72711;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 512111 512969 . + 0 ID=Phyra72711;Parent=Phyra72711;rank=2 scaffold_1 . exon 512111 512969 . + . ID=Phyra72711.2;Parent=Phyra72711;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 ensembl protein_coding_gene 513134 513750 . - . ID=Phyra72712;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000154;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 513134 513750 . - . ID=Phyra72712;Parent=Phyra72712;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 513134 513507 . - 0 ID=Phyra72712;Parent=Phyra72712;rank=2 scaffold_1 . exon 513134 513507 . - . ID=Phyra72712.2;Parent=Phyra72712;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 513579 513750 . - 0 ID=Phyra72712;Parent=Phyra72712;rank=1 scaffold_1 . exon 513579 513750 . - . ID=Phyra72712.1;Parent=Phyra72712;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 515618 516376 . + . ID=Phyra72714;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000156;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 515618 516376 . + . ID=Phyra72714;Parent=Phyra72714;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 515618 516376 . + 0 ID=Phyra72714;Parent=Phyra72714;rank=1 scaffold_1 . exon 515618 516376 . + . ID=Phyra72714.1;Parent=Phyra72714;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 517465 518988 . - . ID=Phyra72715;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000157;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 517465 518988 . - . ID=Phyra72715;Parent=Phyra72715;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 517465 518988 . - 0 ID=Phyra72715;Parent=Phyra72715;rank=1 scaffold_1 . exon 517465 518988 . - . ID=Phyra72715.1;Parent=Phyra72715;constitutive=1;rank=1 scaffold_1 . biological_region 517680 517680 0.999 - . logic_name=eponine scaffold_1 . biological_region 518236 518242 0.999 - . logic_name=eponine scaffold_1 . biological_region 519724 519726 0.999 + . logic_name=eponine scaffold_1 . biological_region 519792 519794 0.999 - . logic_name=eponine scaffold_1 . biological_region 519830 519832 0.999 - . logic_name=eponine scaffold_1 . biological_region 520227 520229 0.999 + . logic_name=eponine scaffold_1 . biological_region 526235 526238 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 520274 522232 . + . ID=Phyra72716;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000158;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 520274 522232 . + . ID=Phyra72716;Parent=Phyra72716;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 520274 522232 . + 0 ID=Phyra72716;Parent=Phyra72716;rank=1 scaffold_1 . exon 520274 522232 . + . ID=Phyra72716.1;Parent=Phyra72716;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 525316 527839 . + . ID=Phyra72717;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000159;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 525316 527839 . + . ID=Phyra72717;Parent=Phyra72717;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 525316 525910 . + 0 ID=Phyra72717;Parent=Phyra72717;rank=1 scaffold_1 . exon 525316 525910 . + . ID=Phyra72717.1;Parent=Phyra72717;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 525932 526689 . + 0 ID=Phyra72717;Parent=Phyra72717;rank=2 scaffold_1 . exon 525932 526689 . + . ID=Phyra72717.2;Parent=Phyra72717;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 526766 526847 . + 0 ID=Phyra72717;Parent=Phyra72717;rank=3 scaffold_1 . exon 526766 526847 . + . ID=Phyra72717.3;Parent=Phyra72717;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 526919 526983 . + 0 ID=Phyra72717;Parent=Phyra72717;rank=4 scaffold_1 . exon 526919 526983 . + . ID=Phyra72717.4;Parent=Phyra72717;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 527060 527839 . + 0 ID=Phyra72717;Parent=Phyra72717;rank=5 scaffold_1 . exon 527060 527839 . + . ID=Phyra72717.5;Parent=Phyra72717;constitutive=1;rank=5 scaffold_1 ensembl protein_coding_gene 529175 531373 . + . ID=Phyra72718;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000160;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 529175 531373 . + . ID=Phyra72718;Parent=Phyra72718;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 529175 531373 . + 0 ID=Phyra72718;Parent=Phyra72718;rank=1 scaffold_1 . exon 529175 531373 . + . ID=Phyra72718.1;Parent=Phyra72718;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 531526 535041 . - . ID=Phyra72719;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000161;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 531526 535041 . - . ID=Phyra72719;Parent=Phyra72719;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 531526 535041 . - 0 ID=Phyra72719;Parent=Phyra72719;rank=1 scaffold_1 . exon 531526 535041 . - . ID=Phyra72719.1;Parent=Phyra72719;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 535437 536159 . + . ID=Phyra72720;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000162;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 535437 536159 . + . ID=Phyra72720;Parent=Phyra72720;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 535437 536159 . + 0 ID=Phyra72720;Parent=Phyra72720;rank=1 scaffold_1 . exon 535437 536159 . + . ID=Phyra72720.1;Parent=Phyra72720;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 536306 537565 . - . ID=Phyra72721;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000163;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 536306 537565 . - . ID=Phyra72721;Parent=Phyra72721;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 536306 537565 . - 0 ID=Phyra72721;Parent=Phyra72721;rank=1 scaffold_1 . exon 536306 537565 . - . ID=Phyra72721.1;Parent=Phyra72721;constitutive=1;rank=1 scaffold_1 . biological_region 540299 540305 0.999 + . logic_name=eponine scaffold_1 . biological_region 546561 546565 0.999 - . logic_name=eponine scaffold_1 . repeat_region 547318 547325 . ? . description=dust scaffold_1 ensembl protein_coding_gene 537738 538220 . + . ID=Phyra72722;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000164;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 537738 538220 . + . ID=Phyra72722;Parent=Phyra72722;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 537738 538220 . + 0 ID=Phyra72722;Parent=Phyra72722;rank=1 scaffold_1 . exon 537738 538220 . + . ID=Phyra72722.1;Parent=Phyra72722;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 547371 548390 . + . ID=Phyra72724;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000166;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 547371 548390 . + . ID=Phyra72724;Parent=Phyra72724;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 547371 548390 . + 0 ID=Phyra72724;Parent=Phyra72724;rank=1 scaffold_1 . exon 547371 548390 . + . ID=Phyra72724.1;Parent=Phyra72724;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 539852 544264 . - . ID=Phyra93308;biotype=protein_coding;external_name=C_scaffold_1000085;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 539852 544264 . - . ID=Phyra93308;Parent=Phyra93308;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 539852 539895 . - 0 ID=Phyra93308;Parent=Phyra93308;rank=11 scaffold_1 . exon 539852 539895 . - . ID=Phyra93308.11;Parent=Phyra93308;constitutive=1;ensembl_phase=1;rank=11 scaffold_1 . CDS 540050 540233 . - 0 ID=Phyra93308;Parent=Phyra93308;rank=10 scaffold_1 . exon 540050 540233 . - . ID=Phyra93308.10;Parent=Phyra93308;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_1 . CDS 540376 540444 . - 0 ID=Phyra93308;Parent=Phyra93308;rank=9 scaffold_1 . exon 540376 540444 . - . ID=Phyra93308.9;Parent=Phyra93308;constitutive=1;rank=9 scaffold_1 . CDS 541085 541597 . - 0 ID=Phyra93308;Parent=Phyra93308;rank=8 scaffold_1 . exon 541085 541597 . - . ID=Phyra93308.8;Parent=Phyra93308;constitutive=1;rank=8 scaffold_1 . CDS 541625 542199 . - 0 ID=Phyra93308;Parent=Phyra93308;rank=7 scaffold_1 . exon 541625 542199 . - . ID=Phyra93308.7;Parent=Phyra93308;constitutive=1;ensembl_phase=1;rank=7 scaffold_1 . CDS 542323 542508 . - 0 ID=Phyra93308;Parent=Phyra93308;rank=6 scaffold_1 . exon 542323 542508 . - . ID=Phyra93308.6;Parent=Phyra93308;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 542569 542925 . - 0 ID=Phyra93308;Parent=Phyra93308;rank=5 scaffold_1 . exon 542569 542925 . - . ID=Phyra93308.5;Parent=Phyra93308;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 542999 543317 . - 0 ID=Phyra93308;Parent=Phyra93308;rank=4 scaffold_1 . exon 542999 543317 . - . ID=Phyra93308.4;Parent=Phyra93308;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 543389 543533 . - 0 ID=Phyra93308;Parent=Phyra93308;rank=3 scaffold_1 . exon 543389 543533 . - . ID=Phyra93308.3;Parent=Phyra93308;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 543917 543968 . - 0 ID=Phyra93308;Parent=Phyra93308;rank=2 scaffold_1 . exon 543917 543968 . - . ID=Phyra93308.2;Parent=Phyra93308;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 544060 544264 . - 0 ID=Phyra93308;Parent=Phyra93308;rank=1 scaffold_1 . exon 544060 544264 . - . ID=Phyra93308.1;Parent=Phyra93308;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 557287 558259 . + . ID=Phyra38584;biotype=protein_coding;external_name=gwEuk.1.83.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 557287 558259 . + . ID=Phyra38584;Parent=Phyra38584;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 557287 557491 . + 0 ID=Phyra38584;Parent=Phyra38584;rank=1 scaffold_1 . exon 557287 557491 . + . ID=Phyra38584.1;Parent=Phyra38584;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 557704 557808 . + 0 ID=Phyra38584;Parent=Phyra38584;rank=2 scaffold_1 . CDS 557887 558029 . + 0 ID=Phyra38584;Parent=Phyra38584;rank=3 scaffold_1 . CDS 558101 558259 . + 0 ID=Phyra38584;Parent=Phyra38584;rank=4 scaffold_1 ensembl protein_coding_gene 555499 556770 . - . ID=Phyra71032;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000012;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 555499 556770 . - . ID=Phyra71032;Parent=Phyra71032;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 555499 556770 . - 0 ID=Phyra71032;Parent=Phyra71032;rank=1 scaffold_1 . exon 555499 556770 . - . ID=Phyra71032.1;Parent=Phyra71032;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 548490 550132 . - . ID=Phyra72725;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000167;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 548490 550132 . - . ID=Phyra72725;Parent=Phyra72725;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 548490 549441 . - 0 ID=Phyra72725;Parent=Phyra72725;rank=3 scaffold_1 . exon 548490 549441 . - . ID=Phyra72725.3;Parent=Phyra72725;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 549525 549697 . - 0 ID=Phyra72725;Parent=Phyra72725;rank=2 scaffold_1 . exon 549525 549697 . - . ID=Phyra72725.2;Parent=Phyra72725;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 549764 550132 . - 0 ID=Phyra72725;Parent=Phyra72725;rank=1 scaffold_1 . exon 549764 550132 . - . ID=Phyra72725.1;Parent=Phyra72725;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 553633 555353 . + . ID=Phyra72727;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000169;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 553633 555353 . + . ID=Phyra72727;Parent=Phyra72727;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 553633 553827 . + 0 ID=Phyra72727;Parent=Phyra72727;rank=1 scaffold_1 . exon 553633 553827 . + . ID=Phyra72727.1;Parent=Phyra72727;constitutive=1;rank=1 scaffold_1 . CDS 553922 554664 . + 0 ID=Phyra72727;Parent=Phyra72727;rank=2 scaffold_1 . exon 553922 554664 . + . ID=Phyra72727.2;Parent=Phyra72727;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 554746 555353 . + 0 ID=Phyra72727;Parent=Phyra72727;rank=3 scaffold_1 . exon 554746 555353 . + . ID=Phyra72727.3;Parent=Phyra72727;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 ensembl protein_coding_gene 550310 552840 . - . ID=Phyra93309;biotype=protein_coding;external_name=C_scaffold_1000086;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 550310 552840 . - . ID=Phyra93309;Parent=Phyra93309;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 550310 550318 . - 0 ID=Phyra93309;Parent=Phyra93309;rank=8 scaffold_1 . exon 550310 550318 . - . ID=Phyra93309.8;Parent=Phyra93309;constitutive=1;rank=8 scaffold_1 . CDS 550360 550536 . - 0 ID=Phyra93309;Parent=Phyra93309;rank=7 scaffold_1 . exon 550360 550536 . - . ID=Phyra93309.7;Parent=Phyra93309;constitutive=1;rank=7 scaffold_1 . CDS 550623 550757 . - 0 ID=Phyra93309;Parent=Phyra93309;rank=6 scaffold_1 . exon 550623 550757 . - . ID=Phyra93309.6;Parent=Phyra93309;constitutive=1;rank=6 scaffold_1 . CDS 550831 551217 . - 0 ID=Phyra93309;Parent=Phyra93309;rank=5 scaffold_1 . exon 550831 551217 . - . ID=Phyra93309.5;Parent=Phyra93309;constitutive=1;rank=5 scaffold_1 . CDS 551284 551545 . - 0 ID=Phyra93309;Parent=Phyra93309;rank=4 scaffold_1 . exon 551284 551545 . - . ID=Phyra93309.4;Parent=Phyra93309;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 551930 551951 . - 0 ID=Phyra93309;Parent=Phyra93309;rank=3 scaffold_1 . exon 551930 551951 . - . ID=Phyra93309.3;Parent=Phyra93309;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1 . CDS 552003 552543 . - 0 ID=Phyra93309;Parent=Phyra93309;rank=2 scaffold_1 . exon 552003 552543 . - . ID=Phyra93309.2;Parent=Phyra93309;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 552634 552840 . - 0 ID=Phyra93309;Parent=Phyra93309;rank=1 scaffold_1 . exon 552634 552840 . - . ID=Phyra93309.1;Parent=Phyra93309;constitutive=1;rank=1 scaffold_1 . repeat_region 558309 558336 . ? . description=trf scaffold_1 . biological_region 564377 564379 0.999 - . logic_name=eponine scaffold_1 . repeat_region 564471 564516 . ? . description=dust scaffold_1 . exon 557704 557808 . + . ID=Phyra38584.2;Parent=Phyra38584;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . exon 557887 558029 . + . ID=Phyra38584.3;Parent=Phyra38584;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . exon 558101 558259 . + . ID=Phyra38584.4;Parent=Phyra38584;constitutive=1;rank=4 scaffold_1 ensembl protein_coding_gene 559854 561377 . - . ID=Phyra72730;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000172;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 559854 561377 . - . ID=Phyra72730;Parent=Phyra72730;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 559854 561377 . - 0 ID=Phyra72730;Parent=Phyra72730;rank=1 scaffold_1 . exon 559854 561377 . - . ID=Phyra72730.1;Parent=Phyra72730;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 564221 565483 . + . ID=Phyra72731;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000173;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 564221 565483 . + . ID=Phyra72731;Parent=Phyra72731;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 564221 564354 . + 0 ID=Phyra72731;Parent=Phyra72731;rank=1 scaffold_1 . exon 564221 564354 . + . ID=Phyra72731.1;Parent=Phyra72731;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 564419 564579 . + 0 ID=Phyra72731;Parent=Phyra72731;rank=2 scaffold_1 . exon 564419 564579 . + . ID=Phyra72731.2;Parent=Phyra72731;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 564663 564767 . + 0 ID=Phyra72731;Parent=Phyra72731;rank=3 scaffold_1 . exon 564663 564767 . + . ID=Phyra72731.3;Parent=Phyra72731;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 564851 564910 . + 0 ID=Phyra72731;Parent=Phyra72731;rank=4 scaffold_1 . exon 564851 564910 . + . ID=Phyra72731.4;Parent=Phyra72731;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 565049 565192 . + 0 ID=Phyra72731;Parent=Phyra72731;rank=5 scaffold_1 . exon 565049 565192 . + . ID=Phyra72731.5;Parent=Phyra72731;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 565272 565483 . + 0 ID=Phyra72731;Parent=Phyra72731;rank=6 scaffold_1 . exon 565272 565483 . + . ID=Phyra72731.6;Parent=Phyra72731;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 ensembl protein_coding_gene 568529 569071 . + . ID=Phyra72732;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000174;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 568529 569071 . + . ID=Phyra72732;Parent=Phyra72732;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 568529 569071 . + 0 ID=Phyra72732;Parent=Phyra72732;rank=1 scaffold_1 . exon 568529 569071 . + . ID=Phyra72732.1;Parent=Phyra72732;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 569263 570669 . - . ID=Phyra72733;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000175;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 569263 570669 . - . ID=Phyra72733;Parent=Phyra72733;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 569263 569603 . - 0 ID=Phyra72733;Parent=Phyra72733;rank=3 scaffold_1 . exon 569263 569603 . - . ID=Phyra72733.3;Parent=Phyra72733;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 569695 569857 . - 0 ID=Phyra72733;Parent=Phyra72733;rank=2 scaffold_1 . exon 569695 569857 . - . ID=Phyra72733.2;Parent=Phyra72733;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 569923 570669 . - 0 ID=Phyra72733;Parent=Phyra72733;rank=1 scaffold_1 . exon 569923 570669 . - . ID=Phyra72733.1;Parent=Phyra72733;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 573325 573822 . - . ID=Phyra72734;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000176;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 573325 573822 . - . ID=Phyra72734;Parent=Phyra72734;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 573325 573822 . - 0 ID=Phyra72734;Parent=Phyra72734;rank=1 scaffold_1 . exon 573325 573822 . - . ID=Phyra72734.1;Parent=Phyra72734;constitutive=1;rank=1 scaffold_1 . repeat_region 582032 582066 . ? . description=dust scaffold_1 . repeat_region 582034 582067 . ? . description=trf scaffold_1 . repeat_region 582035 582066 . ? . description=trf scaffold_1 . repeat_region 582035 582066 . ? . description=trf scaffold_1 . repeat_region 582154 582203 . ? . description=dust scaffold_1 . biological_region 582823 582824 0.999 - . logic_name=eponine scaffold_1 . repeat_region 585564 585619 . ? . description=trf scaffold_1 ensembl protein_coding_gene 586005 586649 . + . ID=Phyra38589;biotype=protein_coding;external_name=gwEuk.1.88.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 586005 586649 . + . ID=Phyra38589;Parent=Phyra38589;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 586005 586649 . + 0 ID=Phyra38589;Parent=Phyra38589;rank=1 scaffold_1 . exon 586005 586649 . + . ID=Phyra38589.1;Parent=Phyra38589;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 577590 578759 . - . ID=Phyra72735;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000177;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 577590 578759 . - . ID=Phyra72735;Parent=Phyra72735;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 577590 578416 . - 0 ID=Phyra72735;Parent=Phyra72735;rank=2 scaffold_1 . exon 577590 578416 . - . ID=Phyra72735.2;Parent=Phyra72735;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 578516 578759 . - 0 ID=Phyra72735;Parent=Phyra72735;rank=1 scaffold_1 . exon 578516 578759 . - . ID=Phyra72735.1;Parent=Phyra72735;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 582655 583188 . + . ID=Phyra72737;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000179;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 582655 583188 . + . ID=Phyra72737;Parent=Phyra72737;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 582655 583188 . + 0 ID=Phyra72737;Parent=Phyra72737;rank=1 scaffold_1 . exon 582655 583188 . + . ID=Phyra72737.1;Parent=Phyra72737;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 584274 585503 . - . ID=Phyra72738;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000180;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 584274 585503 . - . ID=Phyra72738;Parent=Phyra72738;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 584274 585503 . - 0 ID=Phyra72738;Parent=Phyra72738;rank=1 scaffold_1 . exon 584274 585503 . - . ID=Phyra72738.1;Parent=Phyra72738;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 581231 582363 . - . ID=Phyra93311;biotype=protein_coding;external_name=C_scaffold_1000088;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 581231 582363 . - . ID=Phyra93311;Parent=Phyra93311;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 581231 581305 . - 0 ID=Phyra93311;Parent=Phyra93311;rank=4 scaffold_1 . exon 581231 581305 . - . ID=Phyra93311.4;Parent=Phyra93311;constitutive=1;rank=4 scaffold_1 . CDS 581410 581749 . - 0 ID=Phyra93311;Parent=Phyra93311;rank=3 scaffold_1 . exon 581410 581749 . - . ID=Phyra93311.3;Parent=Phyra93311;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 581773 581774 . - 0 ID=Phyra93311;Parent=Phyra93311;rank=2 scaffold_1 . exon 581773 581774 . - . ID=Phyra93311.2;Parent=Phyra93311;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 581857 582363 . - 0 ID=Phyra93311;Parent=Phyra93311;rank=1 scaffold_1 . exon 581857 582363 . - . ID=Phyra93311.1;Parent=Phyra93311;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 587423 590011 . - . ID=Phyra72740;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000182;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 587423 590011 . - . ID=Phyra72740;Parent=Phyra72740;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 587423 589693 . - 0 ID=Phyra72740;Parent=Phyra72740;rank=2 scaffold_1 . exon 587423 589693 . - . ID=Phyra72740.2;Parent=Phyra72740;constitutive=1;rank=2 scaffold_1 . CDS 589778 590011 . - 0 ID=Phyra72740;Parent=Phyra72740;rank=1 scaffold_1 . exon 589778 590011 . - . ID=Phyra72740.1;Parent=Phyra72740;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 590939 591862 . + . ID=Phyra72741;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000183;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 590939 591862 . + . ID=Phyra72741;Parent=Phyra72741;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 590939 591862 . + 0 ID=Phyra72741;Parent=Phyra72741;rank=1 scaffold_1 . exon 590939 591862 . + . ID=Phyra72741.1;Parent=Phyra72741;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 594394 595302 . - . ID=Phyra72742;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000184;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 594394 595302 . - . ID=Phyra72742;Parent=Phyra72742;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 594394 595302 . - 0 ID=Phyra72742;Parent=Phyra72742;rank=1 scaffold_1 . exon 594394 595302 . - . ID=Phyra72742.1;Parent=Phyra72742;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 593208 593733 . + . ID=Phyra93314;biotype=protein_coding;external_name=C_scaffold_1000091;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 593208 593733 . + . ID=Phyra93314;Parent=Phyra93314;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 593208 593346 . + 0 ID=Phyra93314;Parent=Phyra93314;rank=1 scaffold_1 . exon 593208 593346 . + . ID=Phyra93314.1;Parent=Phyra93314;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 593412 593439 . + 0 ID=Phyra93314;Parent=Phyra93314;rank=2 scaffold_1 . exon 593412 593439 . + . ID=Phyra93314.2;Parent=Phyra93314;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 593505 593619 . + 0 ID=Phyra93314;Parent=Phyra93314;rank=3 scaffold_1 . exon 593505 593619 . + . ID=Phyra93314.3;Parent=Phyra93314;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 593701 593733 . + 0 ID=Phyra93314;Parent=Phyra93314;rank=4 scaffold_1 . exon 593701 593733 . + . ID=Phyra93314.4;Parent=Phyra93314;constitutive=1;rank=4 scaffold_1 ensembl protein_coding_gene 595937 598338 . - . ID=Phyra93316;biotype=protein_coding;external_name=C_scaffold_1000093;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 595937 598338 . - . ID=Phyra93316;Parent=Phyra93316;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 595937 596189 . - 0 ID=Phyra93316;Parent=Phyra93316;rank=4 scaffold_1 . exon 595937 596189 . - . ID=Phyra93316.4;Parent=Phyra93316;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 596290 596828 . - 0 ID=Phyra93316;Parent=Phyra93316;rank=3 scaffold_1 . exon 596290 596828 . - . ID=Phyra93316.3;Parent=Phyra93316;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 596907 598014 . - 0 ID=Phyra93316;Parent=Phyra93316;rank=2 scaffold_1 . exon 596907 598014 . - . ID=Phyra93316.2;Parent=Phyra93316;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 598091 598338 . - 0 ID=Phyra93316;Parent=Phyra93316;rank=1 scaffold_1 . biological_region 598261 598267 0.999 - . logic_name=eponine scaffold_1 . biological_region 598743 598747 0.999 + . logic_name=eponine scaffold_1 . biological_region 598908 598910 0.999 - . logic_name=eponine scaffold_1 . biological_region 599187 599189 0.999 + . logic_name=eponine scaffold_1 . biological_region 599279 599286 0.999 - . logic_name=eponine scaffold_1 . biological_region 599297 599301 0.999 + . logic_name=eponine scaffold_1 . biological_region 599656 599660 0.999 + . logic_name=eponine scaffold_1 . biological_region 601581 601582 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 598629 599648 . - . ID=Phyra72744;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000186;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 598629 599648 . - . ID=Phyra72744;Parent=Phyra72744;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 598629 599648 . - 0 ID=Phyra72744;Parent=Phyra72744;rank=1 scaffold_1 . exon 598629 599648 . - . ID=Phyra72744.1;Parent=Phyra72744;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 600472 605472 . + . ID=Phyra72745;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000187;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 600472 605472 . + . ID=Phyra72745;Parent=Phyra72745;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 600472 600738 . + 0 ID=Phyra72745;Parent=Phyra72745;rank=1 scaffold_1 . exon 600472 600738 . + . ID=Phyra72745.1;Parent=Phyra72745;constitutive=1;rank=1 scaffold_1 . CDS 600808 600938 . + 0 ID=Phyra72745;Parent=Phyra72745;rank=2 scaffold_1 . exon 600808 600938 . + . ID=Phyra72745.2;Parent=Phyra72745;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 601013 601230 . + 0 ID=Phyra72745;Parent=Phyra72745;rank=3 scaffold_1 . exon 601013 601230 . + . ID=Phyra72745.3;Parent=Phyra72745;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 601554 603811 . + 0 ID=Phyra72745;Parent=Phyra72745;rank=4 scaffold_1 . exon 601554 603811 . + . ID=Phyra72745.4;Parent=Phyra72745;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 603874 604004 . + 0 ID=Phyra72745;Parent=Phyra72745;rank=5 scaffold_1 . exon 603874 604004 . + . ID=Phyra72745.5;Parent=Phyra72745;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_1 . CDS 604344 604434 . + 0 ID=Phyra72745;Parent=Phyra72745;rank=6 scaffold_1 . exon 604344 604434 . + . ID=Phyra72745.6;Parent=Phyra72745;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 . CDS 604571 604755 . + 0 ID=Phyra72745;Parent=Phyra72745;rank=7 scaffold_1 . exon 604571 604755 . + . ID=Phyra72745.7;Parent=Phyra72745;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_1 . CDS 604840 605259 . + 0 ID=Phyra72745;Parent=Phyra72745;rank=8 scaffold_1 . exon 604840 605259 . + . ID=Phyra72745.8;Parent=Phyra72745;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_1 . CDS 605445 605472 . + 0 ID=Phyra72745;Parent=Phyra72745;rank=9 scaffold_1 . exon 605445 605472 . + . ID=Phyra72745.9;Parent=Phyra72745;constitutive=1;ensembl_phase=2;rank=9 scaffold_1 . exon 598091 598338 . - . ID=Phyra93316.1;Parent=Phyra93316;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . repeat_region 615401 615416 . ? . description=dust scaffold_1 ensembl protein_coding_gene 607862 609021 . - . ID=Phyra71034;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000014;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 607862 609021 . - . ID=Phyra71034;Parent=Phyra71034;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 607862 607921 . - 0 ID=Phyra71034;Parent=Phyra71034;rank=4 scaffold_1 . exon 607862 607921 . - . ID=Phyra71034.4;Parent=Phyra71034;constitutive=1;rank=4 scaffold_1 . CDS 607994 608116 . - 0 ID=Phyra71034;Parent=Phyra71034;rank=3 scaffold_1 . exon 607994 608116 . - . ID=Phyra71034.3;Parent=Phyra71034;constitutive=1;rank=3 scaffold_1 . CDS 608180 608422 . - 0 ID=Phyra71034;Parent=Phyra71034;rank=2 scaffold_1 . exon 608180 608422 . - . ID=Phyra71034.2;Parent=Phyra71034;constitutive=1;rank=2 scaffold_1 . CDS 608488 609021 . - 0 ID=Phyra71034;Parent=Phyra71034;rank=1 scaffold_1 . exon 608488 609021 . - . ID=Phyra71034.1;Parent=Phyra71034;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 611418 613148 . + . ID=Phyra71035;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000015;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 611418 613148 . + . ID=Phyra71035;Parent=Phyra71035;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 611418 611855 . + 0 ID=Phyra71035;Parent=Phyra71035;rank=1 scaffold_1 . exon 611418 611855 . + . ID=Phyra71035.1;Parent=Phyra71035;constitutive=1;rank=1 scaffold_1 . CDS 611910 612171 . + 0 ID=Phyra71035;Parent=Phyra71035;rank=2 scaffold_1 . exon 611910 612171 . + . ID=Phyra71035.2;Parent=Phyra71035;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 612246 612316 . + 0 ID=Phyra71035;Parent=Phyra71035;rank=3 scaffold_1 . exon 612246 612316 . + . ID=Phyra71035.3;Parent=Phyra71035;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 612392 612637 . + 0 ID=Phyra71035;Parent=Phyra71035;rank=4 scaffold_1 . exon 612392 612637 . + . ID=Phyra71035.4;Parent=Phyra71035;constitutive=1;rank=4 scaffold_1 . CDS 612712 612812 . + 0 ID=Phyra71035;Parent=Phyra71035;rank=5 scaffold_1 . exon 612712 612812 . + . ID=Phyra71035.5;Parent=Phyra71035;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_1 . CDS 612890 613148 . + 0 ID=Phyra71035;Parent=Phyra71035;rank=6 scaffold_1 . exon 612890 613148 . + . ID=Phyra71035.6;Parent=Phyra71035;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 ensembl protein_coding_gene 609482 611146 . - . ID=Phyra72747;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000189;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 609482 611146 . - . ID=Phyra72747;Parent=Phyra72747;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 609482 611146 . - 0 ID=Phyra72747;Parent=Phyra72747;rank=1 scaffold_1 . exon 609482 611146 . - . ID=Phyra72747.1;Parent=Phyra72747;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 615108 616167 . - . ID=Phyra72749;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000191;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 615108 616167 . - . ID=Phyra72749;Parent=Phyra72749;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 615108 615120 . - 0 ID=Phyra72749;Parent=Phyra72749;rank=6 scaffold_1 . exon 615108 615120 . - . ID=Phyra72749.6;Parent=Phyra72749;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 . CDS 615212 615380 . - 0 ID=Phyra72749;Parent=Phyra72749;rank=5 scaffold_1 . exon 615212 615380 . - . ID=Phyra72749.5;Parent=Phyra72749;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_1 . CDS 615486 615610 . - 0 ID=Phyra72749;Parent=Phyra72749;rank=4 scaffold_1 . exon 615486 615610 . - . ID=Phyra72749.4;Parent=Phyra72749;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 615694 615730 . - 0 ID=Phyra72749;Parent=Phyra72749;rank=3 scaffold_1 . exon 615694 615730 . - . ID=Phyra72749.3;Parent=Phyra72749;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1 . CDS 615828 615960 . - 0 ID=Phyra72749;Parent=Phyra72749;rank=2 scaffold_1 . exon 615828 615960 . - . ID=Phyra72749.2;Parent=Phyra72749;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 616057 616167 . - 0 ID=Phyra72749;Parent=Phyra72749;rank=1 scaffold_1 . exon 616057 616167 . - . ID=Phyra72749.1;Parent=Phyra72749;constitutive=1;rank=1 scaffold_1 . biological_region 617517 617520 0.999 - . logic_name=eponine scaffold_1 . biological_region 617599 617600 0.999 + . logic_name=eponine scaffold_1 . biological_region 621558 621564 0.999 - . logic_name=eponine scaffold_1 . repeat_region 622134 622177 . ? . description=trf scaffold_1 ensembl protein_coding_gene 617334 618509 . + . ID=Phyra72750;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000192;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 617334 618509 . + . ID=Phyra72750;Parent=Phyra72750;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 617334 618171 . + 0 ID=Phyra72750;Parent=Phyra72750;rank=1 scaffold_1 . exon 617334 618171 . + . ID=Phyra72750.1;Parent=Phyra72750;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 618250 618509 . + 0 ID=Phyra72750;Parent=Phyra72750;rank=2 scaffold_1 . exon 618250 618509 . + . ID=Phyra72750.2;Parent=Phyra72750;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 619036 619398 . - . ID=Phyra72751;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000193;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 619036 619398 . - . ID=Phyra72751;Parent=Phyra72751;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 619036 619175 . - 0 ID=Phyra72751;Parent=Phyra72751;rank=2 scaffold_1 . exon 619036 619175 . - . ID=Phyra72751.2;Parent=Phyra72751;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 619236 619398 . - 0 ID=Phyra72751;Parent=Phyra72751;rank=1 scaffold_1 . exon 619236 619398 . - . ID=Phyra72751.1;Parent=Phyra72751;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 619551 620438 . + . ID=Phyra72752;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000194;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 619551 620438 . + . ID=Phyra72752;Parent=Phyra72752;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 619551 619952 . + 0 ID=Phyra72752;Parent=Phyra72752;rank=1 scaffold_1 . exon 619551 619952 . + . ID=Phyra72752.1;Parent=Phyra72752;constitutive=1;rank=1 scaffold_1 . CDS 620018 620183 . + 0 ID=Phyra72752;Parent=Phyra72752;rank=2 scaffold_1 . exon 620018 620183 . + . ID=Phyra72752.2;Parent=Phyra72752;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 620266 620438 . + 0 ID=Phyra72752;Parent=Phyra72752;rank=3 scaffold_1 . exon 620266 620438 . + . ID=Phyra72752.3;Parent=Phyra72752;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 ensembl protein_coding_gene 621816 624346 . - . ID=Phyra72754;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000196;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 621816 624346 . - . ID=Phyra72754;Parent=Phyra72754;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 621816 622386 . - 0 ID=Phyra72754;Parent=Phyra72754;rank=7 scaffold_1 . exon 621816 622386 . - . ID=Phyra72754.7;Parent=Phyra72754;constitutive=1;ensembl_phase=2;rank=7 scaffold_1 . CDS 622467 622555 . - 0 ID=Phyra72754;Parent=Phyra72754;rank=6 scaffold_1 . exon 622467 622555 . - . ID=Phyra72754.6;Parent=Phyra72754;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_1 . CDS 622632 623634 . - 0 ID=Phyra72754;Parent=Phyra72754;rank=5 scaffold_1 . exon 622632 623634 . - . ID=Phyra72754.5;Parent=Phyra72754;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 623711 623747 . - 0 ID=Phyra72754;Parent=Phyra72754;rank=4 scaffold_1 . exon 623711 623747 . - . ID=Phyra72754.4;Parent=Phyra72754;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_1 . CDS 623830 623936 . - 0 ID=Phyra72754;Parent=Phyra72754;rank=3 scaffold_1 . exon 623830 623936 . - . ID=Phyra72754.3;Parent=Phyra72754;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 624022 624089 . - 0 ID=Phyra72754;Parent=Phyra72754;rank=2 scaffold_1 . exon 624022 624089 . - . ID=Phyra72754.2;Parent=Phyra72754;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 624170 624346 . - 0 ID=Phyra72754;Parent=Phyra72754;rank=1 scaffold_1 . exon 624170 624346 . - . ID=Phyra72754.1;Parent=Phyra72754;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 624605 628952 . - . ID=Phyra72755;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000197;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 624605 628952 . - . ID=Phyra72755;Parent=Phyra72755;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 624605 624652 . - 0 ID=Phyra72755;Parent=Phyra72755;rank=13 scaffold_1 . exon 624605 624652 . - . ID=Phyra72755.13;Parent=Phyra72755;constitutive=1;rank=13 scaffold_1 . CDS 624724 624768 . - 0 ID=Phyra72755;Parent=Phyra72755;rank=12 scaffold_1 . exon 624724 624768 . - . ID=Phyra72755.12;Parent=Phyra72755;constitutive=1;rank=12 scaffold_1 . CDS 624848 624899 . - 0 ID=Phyra72755;Parent=Phyra72755;rank=11 scaffold_1 . exon 624848 624899 . - . ID=Phyra72755.11;Parent=Phyra72755;constitutive=1;ensembl_phase=2;rank=11 scaffold_1 . CDS 624976 625053 . - 0 ID=Phyra72755;Parent=Phyra72755;rank=10 scaffold_1 . exon 624976 625053 . - . ID=Phyra72755.10;Parent=Phyra72755;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_1 . CDS 625126 625187 . - 0 ID=Phyra72755;Parent=Phyra72755;rank=9 scaffold_1 . exon 625126 625187 . - . ID=Phyra72755.9;Parent=Phyra72755;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_1 . CDS 625266 625351 . - 0 ID=Phyra72755;Parent=Phyra72755;rank=8 scaffold_1 . exon 625266 625351 . - . ID=Phyra72755.8;Parent=Phyra72755;constitutive=1;ensembl_phase=1;rank=8 scaffold_1 . CDS 625416 625575 . - 0 ID=Phyra72755;Parent=Phyra72755;rank=7 scaffold_1 . exon 625416 625575 . - . ID=Phyra72755.7;Parent=Phyra72755;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_1 . CDS 625702 625770 . - 0 ID=Phyra72755;Parent=Phyra72755;rank=6 scaffold_1 . exon 625702 625770 . - . ID=Phyra72755.6;Parent=Phyra72755;constitutive=1;rank=6 scaffold_1 . CDS 625972 626278 . - 0 ID=Phyra72755;Parent=Phyra72755;rank=5 scaffold_1 . exon 625972 626278 . - . ID=Phyra72755.5;Parent=Phyra72755;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 626358 626599 . - 0 ID=Phyra72755;Parent=Phyra72755;rank=4 scaffold_1 . exon 626358 626599 . - . ID=Phyra72755.4;Parent=Phyra72755;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 626668 627219 . - 0 ID=Phyra72755;Parent=Phyra72755;rank=3 scaffold_1 . exon 626668 627219 . - . ID=Phyra72755.3;Parent=Phyra72755;constitutive=1;rank=3 scaffold_1 . CDS 627306 627989 . - 0 ID=Phyra72755;Parent=Phyra72755;rank=2 scaffold_1 . CDS 628017 628952 . - 0 ID=Phyra72755;Parent=Phyra72755;rank=1 scaffold_1 ensembl protein_coding_gene 620747 621551 . - . ID=Phyra93322;biotype=protein_coding;external_name=C_scaffold_1000099;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 620747 621551 . - . ID=Phyra93322;Parent=Phyra93322;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 620747 620908 . - 0 ID=Phyra93322;Parent=Phyra93322;rank=3 scaffold_1 . exon 620747 620908 . - . ID=Phyra93322.3;Parent=Phyra93322;constitutive=1;rank=3 scaffold_1 . CDS 620990 621360 . - 0 ID=Phyra93322;Parent=Phyra93322;rank=2 scaffold_1 . exon 620990 621360 . - . ID=Phyra93322.2;Parent=Phyra93322;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 621437 621551 . - 0 ID=Phyra93322;Parent=Phyra93322;rank=1 scaffold_1 . exon 621437 621551 . - . ID=Phyra93322.1;Parent=Phyra93322;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . repeat_region 629175 629222 . ? . description=dust scaffold_1 ensembl protein_coding_gene 630374 631249 . + . ID=Phyra71036;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000016;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 630374 631249 . + . ID=Phyra71036;Parent=Phyra71036;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 630374 631249 . + 0 ID=Phyra71036;Parent=Phyra71036;rank=1 scaffold_1 . exon 630374 631249 . + . ID=Phyra71036.1;Parent=Phyra71036;constitutive=1;rank=1 scaffold_1 . exon 627306 627989 . - . ID=Phyra72755.2;Parent=Phyra72755;constitutive=1;rank=2 scaffold_1 . exon 628017 628952 . - . ID=Phyra72755.1;Parent=Phyra72755;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 633848 635041 . + . ID=Phyra72757;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000199;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 633848 635041 . + . ID=Phyra72757;Parent=Phyra72757;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 633848 634253 . + 0 ID=Phyra72757;Parent=Phyra72757;rank=1 scaffold_1 . exon 633848 634253 . + . ID=Phyra72757.1;Parent=Phyra72757;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 634323 635041 . + 0 ID=Phyra72757;Parent=Phyra72757;rank=2 scaffold_1 . exon 634323 635041 . + . ID=Phyra72757.2;Parent=Phyra72757;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 636806 638075 . - . ID=Phyra72758;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000200;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 636806 638075 . - . ID=Phyra72758;Parent=Phyra72758;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 636806 637264 . - 0 ID=Phyra72758;Parent=Phyra72758;rank=2 scaffold_1 . exon 636806 637264 . - . ID=Phyra72758.2;Parent=Phyra72758;constitutive=1;rank=2 scaffold_1 . CDS 637359 638075 . - 0 ID=Phyra72758;Parent=Phyra72758;rank=1 scaffold_1 . biological_region 638189 638192 0.999 + . logic_name=eponine scaffold_1 . biological_region 641907 641909 0.999 - . logic_name=eponine scaffold_1 . biological_region 641925 641928 0.999 - . logic_name=eponine scaffold_1 . biological_region 642402 642402 0.999 + . logic_name=eponine scaffold_1 . biological_region 642961 642962 0.999 - . logic_name=eponine scaffold_1 . biological_region 643303 643303 0.999 + . logic_name=eponine scaffold_1 . biological_region 643513 643516 0.999 - . logic_name=eponine scaffold_1 . biological_region 643782 643786 0.999 - . logic_name=eponine scaffold_1 . biological_region 643838 643840 0.999 + . logic_name=eponine scaffold_1 . biological_region 643872 643877 0.999 + . logic_name=eponine scaffold_1 . biological_region 644002 644009 0.999 - . logic_name=eponine scaffold_1 . biological_region 644206 644207 0.999 - . logic_name=eponine scaffold_1 . biological_region 644555 644560 0.999 - . logic_name=eponine scaffold_1 . biological_region 644592 644597 0.999 + . logic_name=eponine scaffold_1 . biological_region 644615 644615 0.999 - . logic_name=eponine scaffold_1 . biological_region 644643 644649 0.999 + . logic_name=eponine scaffold_1 . biological_region 644828 644833 0.999 + . logic_name=eponine scaffold_1 . biological_region 644853 644856 0.999 + . logic_name=eponine scaffold_1 . biological_region 644868 644874 0.999 + . logic_name=eponine scaffold_1 . repeat_region 645380 645418 . ? . description=trf scaffold_1 . exon 637359 638075 . - . ID=Phyra72758.1;Parent=Phyra72758;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 638169 639093 . + . ID=Phyra72759;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000201;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 638169 639093 . + . ID=Phyra72759;Parent=Phyra72759;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 638169 638305 . + 0 ID=Phyra72759;Parent=Phyra72759;rank=1 scaffold_1 . exon 638169 638305 . + . ID=Phyra72759.1;Parent=Phyra72759;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 638396 638831 . + 0 ID=Phyra72759;Parent=Phyra72759;rank=2 scaffold_1 . exon 638396 638831 . + . ID=Phyra72759.2;Parent=Phyra72759;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 638901 638975 . + 0 ID=Phyra72759;Parent=Phyra72759;rank=3 scaffold_1 . exon 638901 638975 . + . ID=Phyra72759.3;Parent=Phyra72759;constitutive=1;rank=3 scaffold_1 . CDS 639016 639093 . + 0 ID=Phyra72759;Parent=Phyra72759;rank=4 scaffold_1 . exon 639016 639093 . + . ID=Phyra72759.4;Parent=Phyra72759;constitutive=1;rank=4 scaffold_1 ensembl protein_coding_gene 639506 642513 . - . ID=Phyra72760;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000202;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 639506 642513 . - . ID=Phyra72760;Parent=Phyra72760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 639506 640156 . - 0 ID=Phyra72760;Parent=Phyra72760;rank=7 scaffold_1 . exon 639506 640156 . - . ID=Phyra72760.7;Parent=Phyra72760;constitutive=1;rank=7 scaffold_1 . CDS 640242 640333 . - 0 ID=Phyra72760;Parent=Phyra72760;rank=6 scaffold_1 . exon 640242 640333 . - . ID=Phyra72760.6;Parent=Phyra72760;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 640411 640821 . - 0 ID=Phyra72760;Parent=Phyra72760;rank=5 scaffold_1 . exon 640411 640821 . - . ID=Phyra72760.5;Parent=Phyra72760;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 640896 640947 . - 0 ID=Phyra72760;Parent=Phyra72760;rank=4 scaffold_1 . exon 640896 640947 . - . ID=Phyra72760.4;Parent=Phyra72760;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 640979 641406 . - 0 ID=Phyra72760;Parent=Phyra72760;rank=3 scaffold_1 . exon 640979 641406 . - . ID=Phyra72760.3;Parent=Phyra72760;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 641488 642014 . - 0 ID=Phyra72760;Parent=Phyra72760;rank=2 scaffold_1 . exon 641488 642014 . - . ID=Phyra72760.2;Parent=Phyra72760;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 642086 642513 . - 0 ID=Phyra72760;Parent=Phyra72760;rank=1 scaffold_1 . exon 642086 642513 . - . ID=Phyra72760.1;Parent=Phyra72760;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 643334 644002 . - . ID=Phyra72761;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000203;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 643334 644002 . - . ID=Phyra72761;Parent=Phyra72761;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 643334 644002 . - 0 ID=Phyra72761;Parent=Phyra72761;rank=1 scaffold_1 . exon 643334 644002 . - . ID=Phyra72761.1;Parent=Phyra72761;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 645360 647727 . + . ID=Phyra93324;biotype=protein_coding;external_name=C_scaffold_1000101;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 645360 647727 . + . ID=Phyra93324;Parent=Phyra93324;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 645360 645467 . + 0 ID=Phyra93324;Parent=Phyra93324;rank=1 scaffold_1 . exon 645360 645467 . + . ID=Phyra93324.1;Parent=Phyra93324;constitutive=1;rank=1 scaffold_1 . CDS 645553 645768 . + 0 ID=Phyra93324;Parent=Phyra93324;rank=2 scaffold_1 . exon 645553 645768 . + . ID=Phyra93324.2;Parent=Phyra93324;constitutive=1;rank=2 scaffold_1 . CDS 645845 645931 . + 0 ID=Phyra93324;Parent=Phyra93324;rank=3 scaffold_1 . exon 645845 645931 . + . ID=Phyra93324.3;Parent=Phyra93324;constitutive=1;rank=3 scaffold_1 . CDS 646017 646149 . + 0 ID=Phyra93324;Parent=Phyra93324;rank=4 scaffold_1 . exon 646017 646149 . + . ID=Phyra93324.4;Parent=Phyra93324;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 646248 646309 . + 0 ID=Phyra93324;Parent=Phyra93324;rank=5 scaffold_1 . exon 646248 646309 . + . ID=Phyra93324.5;Parent=Phyra93324;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 646370 646585 . + 0 ID=Phyra93324;Parent=Phyra93324;rank=6 scaffold_1 . exon 646370 646585 . + . ID=Phyra93324.6;Parent=Phyra93324;constitutive=1;rank=6 scaffold_1 . CDS 646730 646850 . + 0 ID=Phyra93324;Parent=Phyra93324;rank=7 scaffold_1 . exon 646730 646850 . + . ID=Phyra93324.7;Parent=Phyra93324;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_1 . CDS 647043 647242 . + 0 ID=Phyra93324;Parent=Phyra93324;rank=8 scaffold_1 . CDS 647314 647587 . + 0 ID=Phyra93324;Parent=Phyra93324;rank=9 scaffold_1 . CDS 647645 647727 . + 0 ID=Phyra93324;Parent=Phyra93324;rank=10 scaffold_1 ensembl protein_coding_gene 653387 654205 . + . ID=Phyra38614;biotype=protein_coding;external_name=gwEuk.1.113.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 653387 654205 . + . ID=Phyra38614;Parent=Phyra38614;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 653387 654205 . + 0 ID=Phyra38614;Parent=Phyra38614;rank=1 scaffold_1 . exon 653387 654205 . + . ID=Phyra38614.1;Parent=Phyra38614;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 654760 655726 . - . ID=Phyra72767;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000209;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 654760 655726 . - . ID=Phyra72767;Parent=Phyra72767;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 654760 654963 . - 0 ID=Phyra72767;Parent=Phyra72767;rank=5 scaffold_1 . exon 654760 654963 . - . ID=Phyra72767.5;Parent=Phyra72767;constitutive=1;rank=5 scaffold_1 . CDS 655048 655268 . - 0 ID=Phyra72767;Parent=Phyra72767;rank=4 scaffold_1 . exon 655048 655268 . - . ID=Phyra72767.4;Parent=Phyra72767;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 655346 655394 . - 0 ID=Phyra72767;Parent=Phyra72767;rank=3 scaffold_1 . exon 655346 655394 . - . ID=Phyra72767.3;Parent=Phyra72767;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 655465 655542 . - 0 ID=Phyra72767;Parent=Phyra72767;rank=2 scaffold_1 . exon 655465 655542 . - . ID=Phyra72767.2;Parent=Phyra72767;constitutive=1;rank=2 scaffold_1 . CDS 655622 655726 . - 0 ID=Phyra72767;Parent=Phyra72767;rank=1 scaffold_1 . exon 655622 655726 . - . ID=Phyra72767.1;Parent=Phyra72767;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 655877 658972 . + . ID=Phyra72768;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000210;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 655877 658972 . + . ID=Phyra72768;Parent=Phyra72768;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 655877 658972 . + 0 ID=Phyra72768;Parent=Phyra72768;rank=1 scaffold_1 . exon 655877 658972 . + . ID=Phyra72768.1;Parent=Phyra72768;constitutive=1;rank=1 scaffold_1 . exon 647043 647242 . + . ID=Phyra93324.8;Parent=Phyra93324;constitutive=1;ensembl_phase=1;rank=8 scaffold_1 . exon 647314 647587 . + . ID=Phyra93324.9;Parent=Phyra93324;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_1 . exon 647645 647727 . + . ID=Phyra93324.10;Parent=Phyra93324;constitutive=1;ensembl_phase=1;rank=10 scaffold_1 ensembl protein_coding_gene 648514 651714 . + . ID=Phyra93325;biotype=protein_coding;external_name=C_scaffold_1000102;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 648514 651714 . + . ID=Phyra93325;Parent=Phyra93325;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 648514 649065 . + 0 ID=Phyra93325;Parent=Phyra93325;rank=1 scaffold_1 . exon 648514 649065 . + . ID=Phyra93325.1;Parent=Phyra93325;constitutive=1;rank=1 scaffold_1 . CDS 649108 649876 . + 0 ID=Phyra93325;Parent=Phyra93325;rank=2 scaffold_1 . exon 649108 649876 . + . ID=Phyra93325.2;Parent=Phyra93325;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 650348 650779 . + 0 ID=Phyra93325;Parent=Phyra93325;rank=3 scaffold_1 . exon 650348 650779 . + . ID=Phyra93325.3;Parent=Phyra93325;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 650801 650898 . + 0 ID=Phyra93325;Parent=Phyra93325;rank=4 scaffold_1 . exon 650801 650898 . + . ID=Phyra93325.4;Parent=Phyra93325;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 651037 651714 . + 0 ID=Phyra93325;Parent=Phyra93325;rank=5 scaffold_1 . exon 651037 651714 . + . ID=Phyra93325.5;Parent=Phyra93325;constitutive=1;rank=5 scaffold_1 ensembl protein_coding_gene 651933 652847 . - . ID=Phyra93326;biotype=protein_coding;external_name=C_scaffold_1000103;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 651933 652847 . - . ID=Phyra93326;Parent=Phyra93326;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 651933 652847 . - 0 ID=Phyra93326;Parent=Phyra93326;rank=1 scaffold_1 . exon 651933 652847 . - . ID=Phyra93326.1;Parent=Phyra93326;constitutive=1;rank=1 scaffold_1 . biological_region 659078 659081 0.999 + . logic_name=eponine scaffold_1 . repeat_region 664003 664040 . ? . description=trf scaffold_1 . repeat_region 664003 664040 . ? . description=dust scaffold_1 ensembl protein_coding_gene 659118 661682 . + . ID=Phyra72769;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000211;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 659118 661682 . + . ID=Phyra72769;Parent=Phyra72769;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 659118 659978 . + 0 ID=Phyra72769;Parent=Phyra72769;rank=1 scaffold_1 . exon 659118 659978 . + . ID=Phyra72769.1;Parent=Phyra72769;constitutive=1;rank=1 scaffold_1 . CDS 660043 660158 . + 0 ID=Phyra72769;Parent=Phyra72769;rank=2 scaffold_1 . exon 660043 660158 . + . ID=Phyra72769.2;Parent=Phyra72769;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 660229 661183 . + 0 ID=Phyra72769;Parent=Phyra72769;rank=3 scaffold_1 . exon 660229 661183 . + . ID=Phyra72769.3;Parent=Phyra72769;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 661251 661682 . + 0 ID=Phyra72769;Parent=Phyra72769;rank=4 scaffold_1 . exon 661251 661682 . + . ID=Phyra72769.4;Parent=Phyra72769;constitutive=1;rank=4 scaffold_1 ensembl protein_coding_gene 662053 663051 . + . ID=Phyra72770;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000212;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 662053 663051 . + . ID=Phyra72770;Parent=Phyra72770;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 662053 662189 . + 0 ID=Phyra72770;Parent=Phyra72770;rank=1 scaffold_1 . exon 662053 662189 . + . ID=Phyra72770.1;Parent=Phyra72770;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 662294 662478 . + 0 ID=Phyra72770;Parent=Phyra72770;rank=2 scaffold_1 . exon 662294 662478 . + . ID=Phyra72770.2;Parent=Phyra72770;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 662536 662606 . + 0 ID=Phyra72770;Parent=Phyra72770;rank=3 scaffold_1 . exon 662536 662606 . + . ID=Phyra72770.3;Parent=Phyra72770;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 662685 662891 . + 0 ID=Phyra72770;Parent=Phyra72770;rank=4 scaffold_1 . exon 662685 662891 . + . ID=Phyra72770.4;Parent=Phyra72770;constitutive=1;rank=4 scaffold_1 . CDS 662959 663051 . + 0 ID=Phyra72770;Parent=Phyra72770;rank=5 scaffold_1 . exon 662959 663051 . + . ID=Phyra72770.5;Parent=Phyra72770;constitutive=1;rank=5 scaffold_1 ensembl protein_coding_gene 663238 666868 . - . ID=Phyra93331;biotype=protein_coding;external_name=C_scaffold_1000108;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 663238 666868 . - . ID=Phyra93331;Parent=Phyra93331;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 663238 663402 . - 0 ID=Phyra93331;Parent=Phyra93331;rank=12 scaffold_1 . exon 663238 663402 . - . ID=Phyra93331.12;Parent=Phyra93331;constitutive=1;rank=12 scaffold_1 . CDS 663468 663765 . - 0 ID=Phyra93331;Parent=Phyra93331;rank=11 scaffold_1 . exon 663468 663765 . - . ID=Phyra93331.11;Parent=Phyra93331;constitutive=1;ensembl_phase=2;rank=11 scaffold_1 . CDS 663994 664311 . - 0 ID=Phyra93331;Parent=Phyra93331;rank=10 scaffold_1 . exon 663994 664311 . - . ID=Phyra93331.10;Parent=Phyra93331;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_1 . CDS 664385 664731 . - 0 ID=Phyra93331;Parent=Phyra93331;rank=9 scaffold_1 . exon 664385 664731 . - . ID=Phyra93331.9;Parent=Phyra93331;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_1 . CDS 664768 664973 . - 0 ID=Phyra93331;Parent=Phyra93331;rank=8 scaffold_1 . exon 664768 664973 . - . ID=Phyra93331.8;Parent=Phyra93331;constitutive=1;ensembl_phase=1;rank=8 scaffold_1 . CDS 665060 665126 . - 0 ID=Phyra93331;Parent=Phyra93331;rank=7 scaffold_1 . exon 665060 665126 . - . ID=Phyra93331.7;Parent=Phyra93331;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_1 . CDS 665278 665489 . - 0 ID=Phyra93331;Parent=Phyra93331;rank=6 scaffold_1 . exon 665278 665489 . - . ID=Phyra93331.6;Parent=Phyra93331;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 665637 665748 . - 0 ID=Phyra93331;Parent=Phyra93331;rank=5 scaffold_1 . exon 665637 665748 . - . ID=Phyra93331.5;Parent=Phyra93331;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . CDS 666174 666245 . - 0 ID=Phyra93331;Parent=Phyra93331;rank=4 scaffold_1 . exon 666174 666245 . - . ID=Phyra93331.4;Parent=Phyra93331;constitutive=1;rank=4 scaffold_1 . CDS 666316 666467 . - 0 ID=Phyra93331;Parent=Phyra93331;rank=3 scaffold_1 . exon 666316 666467 . - . ID=Phyra93331.3;Parent=Phyra93331;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 666533 666713 . - 0 ID=Phyra93331;Parent=Phyra93331;rank=2 scaffold_1 . exon 666533 666713 . - . ID=Phyra93331.2;Parent=Phyra93331;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 666776 666868 . - 0 ID=Phyra93331;Parent=Phyra93331;rank=1 scaffold_1 . exon 666776 666868 . - . ID=Phyra93331.1;Parent=Phyra93331;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 667006 670023 . + . ID=Phyra72772;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000214;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 667006 670023 . + . ID=Phyra72772;Parent=Phyra72772;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 667006 667277 . + 0 ID=Phyra72772;Parent=Phyra72772;rank=1 scaffold_1 . exon 667006 667277 . + . ID=Phyra72772.1;Parent=Phyra72772;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 667446 667596 . + 0 ID=Phyra72772;Parent=Phyra72772;rank=2 scaffold_1 . exon 667446 667596 . + . ID=Phyra72772.2;Parent=Phyra72772;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 667664 667741 . + 0 ID=Phyra72772;Parent=Phyra72772;rank=3 scaffold_1 . exon 667664 667741 . + . ID=Phyra72772.3;Parent=Phyra72772;constitutive=1;rank=3 scaffold_1 . CDS 667808 667898 . + 0 ID=Phyra72772;Parent=Phyra72772;rank=4 scaffold_1 . exon 667808 667898 . + . ID=Phyra72772.4;Parent=Phyra72772;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 668119 668475 . + 0 ID=Phyra72772;Parent=Phyra72772;rank=5 scaffold_1 . exon 668119 668475 . + . ID=Phyra72772.5;Parent=Phyra72772;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 668554 668687 . + 0 ID=Phyra72772;Parent=Phyra72772;rank=6 scaffold_1 . exon 668554 668687 . + . ID=Phyra72772.6;Parent=Phyra72772;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 668954 668989 . + 0 ID=Phyra72772;Parent=Phyra72772;rank=7 scaffold_1 . exon 668954 668989 . + . ID=Phyra72772.7;Parent=Phyra72772;constitutive=1;rank=7 scaffold_1 . CDS 669519 669539 . + 0 ID=Phyra72772;Parent=Phyra72772;rank=8 scaffold_1 . exon 669519 669539 . + . ID=Phyra72772.8;Parent=Phyra72772;constitutive=1;rank=8 scaffold_1 . CDS 669718 670023 . + 0 ID=Phyra72772;Parent=Phyra72772;rank=9 scaffold_1 . exon 669718 670023 . + . ID=Phyra72772.9;Parent=Phyra72772;constitutive=1;rank=9 scaffold_1 ensembl protein_coding_gene 674275 675354 . - . ID=Phyra72774;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000216;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 674275 675354 . - . ID=Phyra72774;Parent=Phyra72774;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 674275 675145 . - 0 ID=Phyra72774;Parent=Phyra72774;rank=2 scaffold_1 . exon 674275 675145 . - . ID=Phyra72774.2;Parent=Phyra72774;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 675233 675354 . - 0 ID=Phyra72774;Parent=Phyra72774;rank=1 scaffold_1 . exon 675233 675354 . - . ID=Phyra72774.1;Parent=Phyra72774;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 670223 672769 . - . ID=Phyra93333;biotype=protein_coding;external_name=C_scaffold_1000110;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 670223 672769 . - . ID=Phyra93333;Parent=Phyra93333;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 670223 670365 . - 0 ID=Phyra93333;Parent=Phyra93333;rank=8 scaffold_1 . exon 670223 670365 . - . ID=Phyra93333.8;Parent=Phyra93333;constitutive=1;ensembl_phase=1;rank=8 scaffold_1 . CDS 670453 670582 . - 0 ID=Phyra93333;Parent=Phyra93333;rank=7 scaffold_1 . exon 670453 670582 . - . ID=Phyra93333.7;Parent=Phyra93333;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_1 . CDS 670648 670837 . - 0 ID=Phyra93333;Parent=Phyra93333;rank=6 scaffold_1 . exon 670648 670837 . - . ID=Phyra93333.6;Parent=Phyra93333;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 . CDS 670919 670981 . - 0 ID=Phyra93333;Parent=Phyra93333;rank=5 scaffold_1 . exon 670919 670981 . - . ID=Phyra93333.5;Parent=Phyra93333;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_1 . CDS 671065 671201 . - 0 ID=Phyra93333;Parent=Phyra93333;rank=4 scaffold_1 . exon 671065 671201 . - . ID=Phyra93333.4;Parent=Phyra93333;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 671285 671631 . - 0 ID=Phyra93333;Parent=Phyra93333;rank=3 scaffold_1 . exon 671285 671631 . - . ID=Phyra93333.3;Parent=Phyra93333;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 671668 671696 . - 0 ID=Phyra93333;Parent=Phyra93333;rank=2 scaffold_1 . exon 671668 671696 . - . ID=Phyra93333.2;Parent=Phyra93333;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 672630 672769 . - 0 ID=Phyra93333;Parent=Phyra93333;rank=1 scaffold_1 . exon 672630 672769 . - . ID=Phyra93333.1;Parent=Phyra93333;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . biological_region 676900 676905 0.999 + . logic_name=eponine scaffold_1 . biological_region 680601 680604 0.999 - . logic_name=eponine scaffold_1 . biological_region 682747 682749 0.999 + . logic_name=eponine scaffold_1 . biological_region 682821 682824 0.999 - . logic_name=eponine scaffold_1 . biological_region 682840 682844 0.999 + . logic_name=eponine scaffold_1 . biological_region 682863 682868 0.999 - . logic_name=eponine scaffold_1 . biological_region 682918 682921 0.999 + . logic_name=eponine scaffold_1 . biological_region 685030 685033 0.999 - . logic_name=eponine scaffold_1 . biological_region 686071 686073 0.999 - . logic_name=eponine scaffold_1 . biological_region 686125 686131 0.999 + . logic_name=eponine scaffold_1 . biological_region 686133 686136 0.999 - . logic_name=eponine scaffold_1 . biological_region 686140 686145 0.999 - . logic_name=eponine scaffold_1 . biological_region 686223 686226 0.999 - . logic_name=eponine scaffold_1 . biological_region 686277 686284 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 686389 689198 . + . ID=Phyra71039;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000019;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 686389 689198 . + . ID=Phyra71039;Parent=Phyra71039;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 686389 686874 . + 0 ID=Phyra71039;Parent=Phyra71039;rank=1 scaffold_1 . exon 686389 686874 . + . ID=Phyra71039.1;Parent=Phyra71039;constitutive=1;rank=1 scaffold_1 . CDS 686959 687015 . + 0 ID=Phyra71039;Parent=Phyra71039;rank=2 scaffold_1 . CDS 687093 689198 . + 0 ID=Phyra71039;Parent=Phyra71039;rank=3 scaffold_1 ensembl protein_coding_gene 677073 677441 . + . ID=Phyra72775;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000217;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 677073 677441 . + . ID=Phyra72775;Parent=Phyra72775;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 677073 677441 . + 0 ID=Phyra72775;Parent=Phyra72775;rank=1 scaffold_1 . exon 677073 677441 . + . ID=Phyra72775.1;Parent=Phyra72775;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 677947 682989 . - . ID=Phyra93338;biotype=protein_coding;external_name=C_scaffold_1000115;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 677947 682989 . - . ID=Phyra93338;Parent=Phyra93338;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 677947 677994 . - 0 ID=Phyra93338;Parent=Phyra93338;rank=11 scaffold_1 . exon 677947 677994 . - . ID=Phyra93338.11;Parent=Phyra93338;constitutive=1;rank=11 scaffold_1 . CDS 678166 678494 . - 0 ID=Phyra93338;Parent=Phyra93338;rank=10 scaffold_1 . exon 678166 678494 . - . ID=Phyra93338.10;Parent=Phyra93338;constitutive=1;ensembl_phase=1;rank=10 scaffold_1 . CDS 678705 678811 . - 0 ID=Phyra93338;Parent=Phyra93338;rank=9 scaffold_1 . exon 678705 678811 . - . ID=Phyra93338.9;Parent=Phyra93338;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_1 . CDS 678935 679073 . - 0 ID=Phyra93338;Parent=Phyra93338;rank=8 scaffold_1 . exon 678935 679073 . - . ID=Phyra93338.8;Parent=Phyra93338;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_1 . CDS 679173 679973 . - 0 ID=Phyra93338;Parent=Phyra93338;rank=7 scaffold_1 . exon 679173 679973 . - . ID=Phyra93338.7;Parent=Phyra93338;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_1 . CDS 680175 680185 . - 0 ID=Phyra93338;Parent=Phyra93338;rank=6 scaffold_1 . exon 680175 680185 . - . ID=Phyra93338.6;Parent=Phyra93338;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_1 . CDS 680354 680762 . - 0 ID=Phyra93338;Parent=Phyra93338;rank=5 scaffold_1 . exon 680354 680762 . - . ID=Phyra93338.5;Parent=Phyra93338;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_1 . CDS 680787 680942 . - 0 ID=Phyra93338;Parent=Phyra93338;rank=4 scaffold_1 . exon 680787 680942 . - . ID=Phyra93338.4;Parent=Phyra93338;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 681003 681047 . - 0 ID=Phyra93338;Parent=Phyra93338;rank=3 scaffold_1 . exon 681003 681047 . - . ID=Phyra93338.3;Parent=Phyra93338;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 681255 682211 . - 0 ID=Phyra93338;Parent=Phyra93338;rank=2 scaffold_1 . exon 681255 682211 . - . ID=Phyra93338.2;Parent=Phyra93338;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 682302 682989 . - 0 ID=Phyra93338;Parent=Phyra93338;rank=1 scaffold_1 . exon 682302 682989 . - . ID=Phyra93338.1;Parent=Phyra93338;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 683452 684011 . + . ID=Phyra93339;biotype=protein_coding;external_name=C_scaffold_1000116;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 683452 684011 . + . ID=Phyra93339;Parent=Phyra93339;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 683452 683483 . + 0 ID=Phyra93339;Parent=Phyra93339;rank=1 scaffold_1 . exon 683452 683483 . + . ID=Phyra93339.1;Parent=Phyra93339;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 683510 684011 . + 0 ID=Phyra93339;Parent=Phyra93339;rank=2 scaffold_1 . exon 683510 684011 . + . ID=Phyra93339.2;Parent=Phyra93339;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . exon 686959 687015 . + . ID=Phyra71039.2;Parent=Phyra71039;constitutive=1;rank=2 scaffold_1 . exon 687093 689198 . + . ID=Phyra71039.3;Parent=Phyra71039;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 689649 691460 . - . ID=Phyra72779;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000221;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 689649 691460 . - . ID=Phyra72779;Parent=Phyra72779;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 689649 690809 . - 0 ID=Phyra72779;Parent=Phyra72779;rank=2 scaffold_1 . exon 689649 690809 . - . ID=Phyra72779.2;Parent=Phyra72779;constitutive=1;rank=2 scaffold_1 . CDS 691179 691460 . - 0 ID=Phyra72779;Parent=Phyra72779;rank=1 scaffold_1 . exon 691179 691460 . - . ID=Phyra72779.1;Parent=Phyra72779;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 695939 697392 . + . ID=Phyra72781;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000223;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 695939 697392 . + . ID=Phyra72781;Parent=Phyra72781;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 695939 695995 . + 0 ID=Phyra72781;Parent=Phyra72781;rank=1 scaffold_1 . exon 695939 695995 . + . ID=Phyra72781.1;Parent=Phyra72781;constitutive=1;rank=1 scaffold_1 . CDS 696118 697392 . + 0 ID=Phyra72781;Parent=Phyra72781;rank=2 scaffold_1 . exon 696118 697392 . + . ID=Phyra72781.2;Parent=Phyra72781;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 692154 692491 . + . ID=Phyra93343;biotype=protein_coding;external_name=C_scaffold_1000120;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 692154 692491 . + . ID=Phyra93343;Parent=Phyra93343;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 692154 692219 . + 0 ID=Phyra93343;Parent=Phyra93343;rank=1 scaffold_1 . exon 692154 692219 . + . ID=Phyra93343.1;Parent=Phyra93343;constitutive=1;rank=1 scaffold_1 . CDS 692291 692491 . + 0 ID=Phyra93343;Parent=Phyra93343;rank=2 scaffold_1 . exon 692291 692491 . + . ID=Phyra93343.2;Parent=Phyra93343;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 693089 694713 . - . ID=Phyra93345;biotype=protein_coding;external_name=C_scaffold_1000122;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 693089 694713 . - . ID=Phyra93345;Parent=Phyra93345;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 693089 693361 . - 0 ID=Phyra93345;Parent=Phyra93345;rank=4 scaffold_1 . exon 693089 693361 . - . ID=Phyra93345.4;Parent=Phyra93345;constitutive=1;rank=4 scaffold_1 . CDS 693533 694150 . - 0 ID=Phyra93345;Parent=Phyra93345;rank=3 scaffold_1 . exon 693533 694150 . - . ID=Phyra93345.3;Parent=Phyra93345;constitutive=1;rank=3 scaffold_1 . CDS 694424 694504 . - 0 ID=Phyra93345;Parent=Phyra93345;rank=2 scaffold_1 . exon 694424 694504 . - . ID=Phyra93345.2;Parent=Phyra93345;constitutive=1;rank=2 scaffold_1 . CDS 694582 694713 . - 0 ID=Phyra93345;Parent=Phyra93345;rank=1 scaffold_1 . exon 694582 694713 . - . ID=Phyra93345.1;Parent=Phyra93345;constitutive=1;rank=1 scaffold_1 . biological_region 700921 700922 0.999 - . logic_name=eponine scaffold_1 . repeat_region 701092 701099 . ? . description=dust scaffold_1 . biological_region 701844 701847 0.999 + . logic_name=eponine scaffold_1 . biological_region 701937 701942 0.999 - . logic_name=eponine scaffold_1 . biological_region 702580 702581 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 702035 702826 . + . ID=Phyra38638;biotype=protein_coding;external_name=gwEuk.1.137.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 702035 702826 . + . ID=Phyra38638;Parent=Phyra38638;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 702035 702826 . + 0 ID=Phyra38638;Parent=Phyra38638;rank=1 scaffold_1 . exon 702035 702826 . + . ID=Phyra38638.1;Parent=Phyra38638;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 697717 700854 . - . ID=Phyra72782;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000224;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 697717 700854 . - . ID=Phyra72782;Parent=Phyra72782;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 697717 697722 . - 0 ID=Phyra72782;Parent=Phyra72782;rank=2 scaffold_1 . exon 697717 697722 . - . ID=Phyra72782.2;Parent=Phyra72782;constitutive=1;rank=2 scaffold_1 . CDS 697774 700854 . - 0 ID=Phyra72782;Parent=Phyra72782;rank=1 scaffold_1 . exon 697774 700854 . - . ID=Phyra72782.1;Parent=Phyra72782;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 703164 704630 . + . ID=Phyra72784;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000226;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 703164 704630 . + . ID=Phyra72784;Parent=Phyra72784;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 703164 703583 . + 0 ID=Phyra72784;Parent=Phyra72784;rank=1 scaffold_1 . exon 703164 703583 . + . ID=Phyra72784.1;Parent=Phyra72784;constitutive=1;rank=1 scaffold_1 . CDS 703651 703813 . + 0 ID=Phyra72784;Parent=Phyra72784;rank=2 scaffold_1 . exon 703651 703813 . + . ID=Phyra72784.2;Parent=Phyra72784;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 703914 704083 . + 0 ID=Phyra72784;Parent=Phyra72784;rank=3 scaffold_1 . exon 703914 704083 . + . ID=Phyra72784.3;Parent=Phyra72784;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 704255 704563 . + 0 ID=Phyra72784;Parent=Phyra72784;rank=4 scaffold_1 . exon 704255 704563 . + . ID=Phyra72784.4;Parent=Phyra72784;constitutive=1;rank=4 scaffold_1 . CDS 704610 704630 . + 0 ID=Phyra72784;Parent=Phyra72784;rank=5 scaffold_1 . exon 704610 704630 . + . ID=Phyra72784.5;Parent=Phyra72784;constitutive=1;rank=5 scaffold_1 ensembl protein_coding_gene 707946 709088 . - . ID=Phyra72785;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000227;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 707946 709088 . - . ID=Phyra72785;Parent=Phyra72785;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 707946 708930 . - 0 ID=Phyra72785;Parent=Phyra72785;rank=2 scaffold_1 . exon 707946 708930 . - . ID=Phyra72785.2;Parent=Phyra72785;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 708997 709088 . - 0 ID=Phyra72785;Parent=Phyra72785;rank=1 scaffold_1 . exon 708997 709088 . - . ID=Phyra72785.1;Parent=Phyra72785;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 709451 712690 . + . ID=Phyra72786;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000228;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 709451 712690 . + . ID=Phyra72786;Parent=Phyra72786;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 709451 709503 . + 0 ID=Phyra72786;Parent=Phyra72786;rank=1 scaffold_1 . exon 709451 709503 . + . ID=Phyra72786.1;Parent=Phyra72786;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 709598 709775 . + 0 ID=Phyra72786;Parent=Phyra72786;rank=2 scaffold_1 . exon 709598 709775 . + . ID=Phyra72786.2;Parent=Phyra72786;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 709821 709973 . + 0 ID=Phyra72786;Parent=Phyra72786;rank=3 scaffold_1 . exon 709821 709973 . + . ID=Phyra72786.3;Parent=Phyra72786;constitutive=1;rank=3 scaffold_1 . CDS 710045 710232 . + 0 ID=Phyra72786;Parent=Phyra72786;rank=4 scaffold_1 . exon 710045 710232 . + . ID=Phyra72786.4;Parent=Phyra72786;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 710309 710402 . + 0 ID=Phyra72786;Parent=Phyra72786;rank=5 scaffold_1 . exon 710309 710402 . + . ID=Phyra72786.5;Parent=Phyra72786;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 710462 710551 . + 0 ID=Phyra72786;Parent=Phyra72786;rank=6 scaffold_1 . exon 710462 710551 . + . ID=Phyra72786.6;Parent=Phyra72786;constitutive=1;rank=6 scaffold_1 . CDS 710614 710727 . + 0 ID=Phyra72786;Parent=Phyra72786;rank=7 scaffold_1 . exon 710614 710727 . + . ID=Phyra72786.7;Parent=Phyra72786;constitutive=1;rank=7 scaffold_1 . CDS 710793 711047 . + 0 ID=Phyra72786;Parent=Phyra72786;rank=8 scaffold_1 . exon 710793 711047 . + . ID=Phyra72786.8;Parent=Phyra72786;constitutive=1;rank=8 scaffold_1 . CDS 711147 711210 . + 0 ID=Phyra72786;Parent=Phyra72786;rank=9 scaffold_1 . exon 711147 711210 . + . ID=Phyra72786.9;Parent=Phyra72786;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_1 . CDS 711259 711587 . + 0 ID=Phyra72786;Parent=Phyra72786;rank=10 scaffold_1 . exon 711259 711587 . + . ID=Phyra72786.10;Parent=Phyra72786;constitutive=1;ensembl_phase=1;rank=10 scaffold_1 . CDS 711680 712690 . + 0 ID=Phyra72786;Parent=Phyra72786;rank=11 scaffold_1 . exon 711680 712690 . + . ID=Phyra72786.11;Parent=Phyra72786;constitutive=1;rank=11 scaffold_1 ensembl protein_coding_gene 712826 716604 . - . ID=Phyra72787;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000229;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 712826 716604 . - . ID=Phyra72787;Parent=Phyra72787;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 712826 712843 . - 0 ID=Phyra72787;Parent=Phyra72787;rank=4 scaffold_1 . exon 712826 712843 . - . ID=Phyra72787.4;Parent=Phyra72787;constitutive=1;rank=4 scaffold_1 . CDS 712888 715854 . - 0 ID=Phyra72787;Parent=Phyra72787;rank=3 scaffold_1 . exon 712888 715854 . - . ID=Phyra72787.3;Parent=Phyra72787;constitutive=1;rank=3 scaffold_1 . CDS 715929 716180 . - 0 ID=Phyra72787;Parent=Phyra72787;rank=2 scaffold_1 . exon 715929 716180 . - . ID=Phyra72787.2;Parent=Phyra72787;constitutive=1;rank=2 scaffold_1 . CDS 716254 716604 . - 0 ID=Phyra72787;Parent=Phyra72787;rank=1 scaffold_1 . exon 716254 716604 . - . ID=Phyra72787.1;Parent=Phyra72787;constitutive=1;rank=1 scaffold_1 . biological_region 716873 716873 0.999 + . logic_name=eponine scaffold_1 . biological_region 716882 716884 0.999 - . logic_name=eponine scaffold_1 . biological_region 716943 716947 0.999 - . logic_name=eponine scaffold_1 . biological_region 716953 716959 0.999 + . logic_name=eponine scaffold_1 . biological_region 717012 717015 0.999 - . logic_name=eponine scaffold_1 . biological_region 717822 717823 0.999 - . logic_name=eponine scaffold_1 . biological_region 718701 718704 0.999 + . logic_name=eponine scaffold_1 . repeat_region 718989 719033 . ? . description=trf scaffold_1 . biological_region 719402 719403 0.999 - . logic_name=eponine scaffold_1 . biological_region 719564 719565 0.999 - . logic_name=eponine scaffold_1 . repeat_region 719995 720020 . ? . description=trf scaffold_1 . repeat_region 719995 720020 . ? . description=dust scaffold_1 . biological_region 721057 721062 0.999 - . logic_name=eponine scaffold_1 . biological_region 725354 725355 0.999 + . logic_name=eponine scaffold_1 . biological_region 725792 725795 0.999 + . logic_name=eponine scaffold_1 . biological_region 725997 725999 0.999 + . logic_name=eponine scaffold_1 . biological_region 726569 726571 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 721865 726043 . - . ID=Phyra72790;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000232;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 721865 726043 . - . ID=Phyra72790;Parent=Phyra72790;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 721865 725445 . - 0 ID=Phyra72790;Parent=Phyra72790;rank=2 scaffold_1 . exon 721865 725445 . - . ID=Phyra72790.2;Parent=Phyra72790;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 725515 726043 . - 0 ID=Phyra72790;Parent=Phyra72790;rank=1 scaffold_1 . exon 725515 726043 . - . ID=Phyra72790.1;Parent=Phyra72790;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 716784 720799 . + . ID=Phyra93348;biotype=protein_coding;external_name=C_scaffold_1000125;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 716784 720799 . + . ID=Phyra93348;Parent=Phyra93348;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 716784 718379 . + 0 ID=Phyra93348;Parent=Phyra93348;rank=1 scaffold_1 . exon 716784 718379 . + . ID=Phyra93348.1;Parent=Phyra93348;constitutive=1;rank=1 scaffold_1 . CDS 718575 719110 . + 0 ID=Phyra93348;Parent=Phyra93348;rank=2 scaffold_1 . exon 718575 719110 . + . ID=Phyra93348.2;Parent=Phyra93348;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 719332 719977 . + 0 ID=Phyra93348;Parent=Phyra93348;rank=3 scaffold_1 . exon 719332 719977 . + . ID=Phyra93348.3;Parent=Phyra93348;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 720194 720347 . + 0 ID=Phyra93348;Parent=Phyra93348;rank=4 scaffold_1 . exon 720194 720347 . + . ID=Phyra93348.4;Parent=Phyra93348;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 720452 720550 . + 0 ID=Phyra93348;Parent=Phyra93348;rank=5 scaffold_1 . exon 720452 720550 . + . ID=Phyra93348.5;Parent=Phyra93348;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 720610 720799 . + 0 ID=Phyra93348;Parent=Phyra93348;rank=6 scaffold_1 . exon 720610 720799 . + . ID=Phyra93348.6;Parent=Phyra93348;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_1 ensembl protein_coding_gene 726280 727158 . + . ID=Phyra93352;biotype=protein_coding;external_name=C_scaffold_1000129;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 726280 727158 . + . ID=Phyra93352;Parent=Phyra93352;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 726280 726374 . + 0 ID=Phyra93352;Parent=Phyra93352;rank=1 scaffold_1 . exon 726280 726374 . + . ID=Phyra93352.1;Parent=Phyra93352;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 726447 726669 . + 0 ID=Phyra93352;Parent=Phyra93352;rank=2 scaffold_1 . exon 726447 726669 . + . ID=Phyra93352.2;Parent=Phyra93352;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 726737 726811 . + 0 ID=Phyra93352;Parent=Phyra93352;rank=3 scaffold_1 . CDS 726895 727158 . + 0 ID=Phyra93352;Parent=Phyra93352;rank=4 scaffold_1 ensembl protein_coding_gene 732260 733150 . + . ID=Phyra72794;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000236;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 732260 733150 . + . ID=Phyra72794;Parent=Phyra72794;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 732260 732782 . + 0 ID=Phyra72794;Parent=Phyra72794;rank=1 scaffold_1 . exon 732260 732782 . + . ID=Phyra72794.1;Parent=Phyra72794;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 732858 733150 . + 0 ID=Phyra72794;Parent=Phyra72794;rank=2 scaffold_1 . exon 732858 733150 . + . ID=Phyra72794.2;Parent=Phyra72794;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . exon 726737 726811 . + . ID=Phyra93352.3;Parent=Phyra93352;constitutive=1;rank=3 scaffold_1 . exon 726895 727158 . + . ID=Phyra93352.4;Parent=Phyra93352;constitutive=1;rank=4 scaffold_1 ensembl protein_coding_gene 727357 730789 . - . ID=Phyra93353;biotype=protein_coding;external_name=C_scaffold_1000130;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 727357 730789 . - . ID=Phyra93353;Parent=Phyra93353;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 727357 727443 . - 0 ID=Phyra93353;Parent=Phyra93353;rank=5 scaffold_1 . exon 727357 727443 . - . ID=Phyra93353.5;Parent=Phyra93353;constitutive=1;rank=5 scaffold_1 . CDS 727646 728088 . - 0 ID=Phyra93353;Parent=Phyra93353;rank=4 scaffold_1 . exon 727646 728088 . - . ID=Phyra93353.4;Parent=Phyra93353;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 728158 728404 . - 0 ID=Phyra93353;Parent=Phyra93353;rank=3 scaffold_1 . exon 728158 728404 . - . ID=Phyra93353.3;Parent=Phyra93353;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 728918 729824 . - 0 ID=Phyra93353;Parent=Phyra93353;rank=2 scaffold_1 . exon 728918 729824 . - . ID=Phyra93353.2;Parent=Phyra93353;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 730359 730789 . - 0 ID=Phyra93353;Parent=Phyra93353;rank=1 scaffold_1 . exon 730359 730789 . - . ID=Phyra93353.1;Parent=Phyra93353;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . repeat_region 742094 742149 . ? . description=dust scaffold_1 . biological_region 743427 743428 0.999 - . logic_name=eponine scaffold_1 . biological_region 745390 745396 0.999 - . logic_name=eponine scaffold_1 . biological_region 746390 746396 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 741058 741932 . - . ID=Phyra93354;biotype=protein_coding;external_name=C_scaffold_1000131;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 741058 741932 . - . ID=Phyra93354;Parent=Phyra93354;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 741058 741143 . - 0 ID=Phyra93354;Parent=Phyra93354;rank=3 scaffold_1 . exon 741058 741143 . - . ID=Phyra93354.3;Parent=Phyra93354;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 741335 741466 . - 0 ID=Phyra93354;Parent=Phyra93354;rank=2 scaffold_1 . exon 741335 741466 . - . ID=Phyra93354.2;Parent=Phyra93354;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 741500 741932 . - 0 ID=Phyra93354;Parent=Phyra93354;rank=1 scaffold_1 . exon 741500 741932 . - . ID=Phyra93354.1;Parent=Phyra93354;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 742294 744643 . + . ID=Phyra93355;biotype=protein_coding;external_name=C_scaffold_1000132;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 742294 744643 . + . ID=Phyra93355;Parent=Phyra93355;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 742294 742485 . + 0 ID=Phyra93355;Parent=Phyra93355;rank=1 scaffold_1 . exon 742294 742485 . + . ID=Phyra93355.1;Parent=Phyra93355;constitutive=1;rank=1 scaffold_1 . CDS 742568 742903 . + 0 ID=Phyra93355;Parent=Phyra93355;rank=2 scaffold_1 . exon 742568 742903 . + . ID=Phyra93355.2;Parent=Phyra93355;constitutive=1;rank=2 scaffold_1 . CDS 743042 743403 . + 0 ID=Phyra93355;Parent=Phyra93355;rank=3 scaffold_1 . exon 743042 743403 . + . ID=Phyra93355.3;Parent=Phyra93355;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 744061 744643 . + 0 ID=Phyra93355;Parent=Phyra93355;rank=4 scaffold_1 . exon 744061 744643 . + . ID=Phyra93355.4;Parent=Phyra93355;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 ensembl protein_coding_gene 747626 748222 . + . ID=Phyra72796;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000238;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 747626 748222 . + . ID=Phyra72796;Parent=Phyra72796;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 747626 748222 . + 0 ID=Phyra72796;Parent=Phyra72796;rank=1 scaffold_1 . exon 747626 748222 . + . ID=Phyra72796.1;Parent=Phyra72796;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 750619 751515 . - . ID=Phyra72797;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000239;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 750619 751515 . - . ID=Phyra72797;Parent=Phyra72797;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 750619 750765 . - 0 ID=Phyra72797;Parent=Phyra72797;rank=2 scaffold_1 . exon 750619 750765 . - . ID=Phyra72797.2;Parent=Phyra72797;constitutive=1;rank=2 scaffold_1 . CDS 750940 751515 . - 0 ID=Phyra72797;Parent=Phyra72797;rank=1 scaffold_1 . exon 750940 751515 . - . ID=Phyra72797.1;Parent=Phyra72797;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 755373 756089 . - . ID=Phyra72798;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000240;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 755373 756089 . - . ID=Phyra72798;Parent=Phyra72798;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 755373 756089 . - 0 ID=Phyra72798;Parent=Phyra72798;rank=1 scaffold_1 . exon 755373 756089 . - . ID=Phyra72798.1;Parent=Phyra72798;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 756299 757891 . + . ID=Phyra72799;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000241;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 756299 757891 . + . ID=Phyra72799;Parent=Phyra72799;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 756299 757177 . + 0 ID=Phyra72799;Parent=Phyra72799;rank=1 scaffold_1 . exon 756299 757177 . + . ID=Phyra72799.1;Parent=Phyra72799;constitutive=1;rank=1 scaffold_1 . CDS 757409 757891 . + 0 ID=Phyra72799;Parent=Phyra72799;rank=2 scaffold_1 . biological_region 759251 759255 0.999 + . logic_name=eponine scaffold_1 . biological_region 759339 759347 0.999 + . logic_name=eponine scaffold_1 . biological_region 759372 759379 0.999 - . logic_name=eponine scaffold_1 . biological_region 759375 759383 0.999 + . logic_name=eponine scaffold_1 . biological_region 759398 759402 0.999 - . logic_name=eponine scaffold_1 . repeat_region 761206 761233 . ? . description=trf scaffold_1 . repeat_region 761502 761699 . ? . description=trf scaffold_1 . repeat_region 761541 761677 . ? . description=trf scaffold_1 . repeat_region 761555 761795 . ? . description=trf scaffold_1 . repeat_region 761694 761748 . ? . description=trf scaffold_1 . repeat_region 763984 763991 . ? . description=dust scaffold_1 . exon 757409 757891 . + . ID=Phyra72799.2;Parent=Phyra72799;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 758037 758477 . - . ID=Phyra72800;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000242;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 758037 758477 . - . ID=Phyra72800;Parent=Phyra72800;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 758037 758477 . - 0 ID=Phyra72800;Parent=Phyra72800;rank=1 scaffold_1 . exon 758037 758477 . - . ID=Phyra72800.1;Parent=Phyra72800;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 758839 759469 . - . ID=Phyra72801;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000243;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 758839 759469 . - . ID=Phyra72801;Parent=Phyra72801;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 758839 758987 . - 0 ID=Phyra72801;Parent=Phyra72801;rank=2 scaffold_1 . exon 758839 758987 . - . ID=Phyra72801.2;Parent=Phyra72801;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 759055 759469 . - 0 ID=Phyra72801;Parent=Phyra72801;rank=1 scaffold_1 . exon 759055 759469 . - . ID=Phyra72801.1;Parent=Phyra72801;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 759857 762124 . - . ID=Phyra72802;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000244;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 759857 762124 . - . ID=Phyra72802;Parent=Phyra72802;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 759857 762124 . - 0 ID=Phyra72802;Parent=Phyra72802;rank=1 scaffold_1 . exon 759857 762124 . - . ID=Phyra72802.1;Parent=Phyra72802;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 765078 765392 . - . ID=Phyra72803;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000245;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 765078 765392 . - . ID=Phyra72803;Parent=Phyra72803;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 765078 765392 . - 0 ID=Phyra72803;Parent=Phyra72803;rank=1 scaffold_1 . exon 765078 765392 . - . ID=Phyra72803.1;Parent=Phyra72803;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 765646 768381 . - . ID=Phyra72804;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000246;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 765646 768381 . - . ID=Phyra72804;Parent=Phyra72804;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 765646 768381 . - 0 ID=Phyra72804;Parent=Phyra72804;rank=1 scaffold_1 . exon 765646 768381 . - . ID=Phyra72804.1;Parent=Phyra72804;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 769249 771213 . - . ID=Phyra71042;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000022;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 769249 771213 . - . ID=Phyra71042;Parent=Phyra71042;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 769249 771213 . - 0 ID=Phyra71042;Parent=Phyra71042;rank=1 scaffold_1 . exon 769249 771213 . - . ID=Phyra71042.1;Parent=Phyra71042;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 772996 773934 . + . ID=Phyra72806;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000248;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 772996 773934 . + . ID=Phyra72806;Parent=Phyra72806;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 772996 773934 . + 0 ID=Phyra72806;Parent=Phyra72806;rank=1 scaffold_1 . exon 772996 773934 . + . ID=Phyra72806.1;Parent=Phyra72806;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 775421 777371 . - . ID=Phyra93356;biotype=protein_coding;external_name=C_scaffold_1000133;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 775421 777371 . - . ID=Phyra93356;Parent=Phyra93356;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 775421 775424 . - 0 ID=Phyra93356;Parent=Phyra93356;rank=10 scaffold_1 . exon 775421 775424 . - . ID=Phyra93356.10;Parent=Phyra93356;constitutive=1;ensembl_phase=2;rank=10 scaffold_1 . CDS 775499 775754 . - 0 ID=Phyra93356;Parent=Phyra93356;rank=9 scaffold_1 . exon 775499 775754 . - . ID=Phyra93356.9;Parent=Phyra93356;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_1 . CDS 775809 775895 . - 0 ID=Phyra93356;Parent=Phyra93356;rank=8 scaffold_1 . exon 775809 775895 . - . ID=Phyra93356.8;Parent=Phyra93356;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_1 . CDS 775929 776098 . - 0 ID=Phyra93356;Parent=Phyra93356;rank=7 scaffold_1 . exon 775929 776098 . - . ID=Phyra93356.7;Parent=Phyra93356;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_1 . CDS 776164 776261 . - 0 ID=Phyra93356;Parent=Phyra93356;rank=6 scaffold_1 . exon 776164 776261 . - . ID=Phyra93356.6;Parent=Phyra93356;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_1 . CDS 776348 776425 . - 0 ID=Phyra93356;Parent=Phyra93356;rank=5 scaffold_1 . CDS 776499 776702 . - 0 ID=Phyra93356;Parent=Phyra93356;rank=4 scaffold_1 . CDS 776757 776909 . - 0 ID=Phyra93356;Parent=Phyra93356;rank=3 scaffold_1 . CDS 776985 777128 . - 0 ID=Phyra93356;Parent=Phyra93356;rank=2 scaffold_1 . CDS 777207 777371 . - 0 ID=Phyra93356;Parent=Phyra93356;rank=1 scaffold_1 . repeat_region 783083 783096 . ? . description=dust scaffold_1 . repeat_region 784777 785910 . ? . description=trf scaffold_1 . repeat_region 785911 788052 . ? . description=dust scaffold_1 ensembl protein_coding_gene 779132 781303 . - . ID=Phyra72809;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000251;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 779132 781303 . - . ID=Phyra72809;Parent=Phyra72809;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 779132 779318 . - 0 ID=Phyra72809;Parent=Phyra72809;rank=5 scaffold_1 . exon 779132 779318 . - . ID=Phyra72809.5;Parent=Phyra72809;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 779407 779504 . - 0 ID=Phyra72809;Parent=Phyra72809;rank=4 scaffold_1 . exon 779407 779504 . - . ID=Phyra72809.4;Parent=Phyra72809;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 779577 780582 . - 0 ID=Phyra72809;Parent=Phyra72809;rank=3 scaffold_1 . exon 779577 780582 . - . ID=Phyra72809.3;Parent=Phyra72809;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 780680 781117 . - 0 ID=Phyra72809;Parent=Phyra72809;rank=2 scaffold_1 . exon 780680 781117 . - . ID=Phyra72809.2;Parent=Phyra72809;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 781296 781303 . - 0 ID=Phyra72809;Parent=Phyra72809;rank=1 scaffold_1 . exon 781296 781303 . - . ID=Phyra72809.1;Parent=Phyra72809;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . exon 776348 776425 . - . ID=Phyra93356.5;Parent=Phyra93356;constitutive=1;rank=5 scaffold_1 . exon 776499 776702 . - . ID=Phyra93356.4;Parent=Phyra93356;constitutive=1;rank=4 scaffold_1 . exon 776757 776909 . - . ID=Phyra93356.3;Parent=Phyra93356;constitutive=1;rank=3 scaffold_1 . exon 776985 777128 . - . ID=Phyra93356.2;Parent=Phyra93356;constitutive=1;rank=2 scaffold_1 . exon 777207 777371 . - . ID=Phyra93356.1;Parent=Phyra93356;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 778174 778964 . + . ID=Phyra93358;biotype=protein_coding;external_name=C_scaffold_1000135;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 778174 778964 . + . ID=Phyra93358;Parent=Phyra93358;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 778174 778361 . + 0 ID=Phyra93358;Parent=Phyra93358;rank=1 scaffold_1 . exon 778174 778361 . + . ID=Phyra93358.1;Parent=Phyra93358;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 778445 778523 . + 0 ID=Phyra93358;Parent=Phyra93358;rank=2 scaffold_1 . exon 778445 778523 . + . ID=Phyra93358.2;Parent=Phyra93358;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 778602 778964 . + 0 ID=Phyra93358;Parent=Phyra93358;rank=3 scaffold_1 . exon 778602 778964 . + . ID=Phyra93358.3;Parent=Phyra93358;constitutive=1;rank=3 scaffold_1 . biological_region 792108 792111 0.999 - . logic_name=eponine scaffold_1 . biological_region 793097 793101 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 794277 795187 . - . ID=Phyra71043;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000023;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 794277 795187 . - . ID=Phyra71043;Parent=Phyra71043;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 794277 794365 . - 0 ID=Phyra71043;Parent=Phyra71043;rank=6 scaffold_1 . exon 794277 794365 . - . ID=Phyra71043.6;Parent=Phyra71043;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 794440 794568 . - 0 ID=Phyra71043;Parent=Phyra71043;rank=5 scaffold_1 . exon 794440 794568 . - . ID=Phyra71043.5;Parent=Phyra71043;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 794636 794688 . - 0 ID=Phyra71043;Parent=Phyra71043;rank=4 scaffold_1 . exon 794636 794688 . - . ID=Phyra71043.4;Parent=Phyra71043;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 794767 794881 . - 0 ID=Phyra71043;Parent=Phyra71043;rank=3 scaffold_1 . exon 794767 794881 . - . ID=Phyra71043.3;Parent=Phyra71043;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1 . CDS 794953 795035 . - 0 ID=Phyra71043;Parent=Phyra71043;rank=2 scaffold_1 . exon 794953 795035 . - . ID=Phyra71043.2;Parent=Phyra71043;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 795144 795187 . - 0 ID=Phyra71043;Parent=Phyra71043;rank=1 scaffold_1 . exon 795144 795187 . - . ID=Phyra71043.1;Parent=Phyra71043;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 792063 794038 . + . ID=Phyra72810;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000252;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 792063 794038 . + . ID=Phyra72810;Parent=Phyra72810;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 792063 792113 . + 0 ID=Phyra72810;Parent=Phyra72810;rank=1 scaffold_1 . exon 792063 792113 . + . ID=Phyra72810.1;Parent=Phyra72810;constitutive=1;rank=1 scaffold_1 . CDS 792227 792875 . + 0 ID=Phyra72810;Parent=Phyra72810;rank=2 scaffold_1 . exon 792227 792875 . + . ID=Phyra72810.2;Parent=Phyra72810;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 792961 793096 . + 0 ID=Phyra72810;Parent=Phyra72810;rank=3 scaffold_1 . exon 792961 793096 . + . ID=Phyra72810.3;Parent=Phyra72810;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1 . CDS 793381 793851 . + 0 ID=Phyra72810;Parent=Phyra72810;rank=4 scaffold_1 . exon 793381 793851 . + . ID=Phyra72810.4;Parent=Phyra72810;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_1 . CDS 793924 794038 . + 0 ID=Phyra72810;Parent=Phyra72810;rank=5 scaffold_1 . exon 793924 794038 . + . ID=Phyra72810.5;Parent=Phyra72810;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 ensembl protein_coding_gene 795530 796231 . - . ID=Phyra72812;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000254;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 795530 796231 . - . ID=Phyra72812;Parent=Phyra72812;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 795530 796231 . - 0 ID=Phyra72812;Parent=Phyra72812;rank=1 scaffold_1 . exon 795530 796231 . - . ID=Phyra72812.1;Parent=Phyra72812;constitutive=1;rank=1 scaffold_1 . repeat_region 796508 796557 . ? . description=dust scaffold_1 . repeat_region 801128 801170 . ? . description=trf scaffold_1 . repeat_region 805880 805887 . ? . description=dust scaffold_1 ensembl protein_coding_gene 801694 804139 . - . ID=Phyra71044;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000024;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 801694 804139 . - . ID=Phyra71044;Parent=Phyra71044;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 801694 802010 . - 0 ID=Phyra71044;Parent=Phyra71044;rank=7 scaffold_1 . exon 801694 802010 . - . ID=Phyra71044.7;Parent=Phyra71044;constitutive=1;ensembl_phase=1;rank=7 scaffold_1 . CDS 802092 802440 . - 0 ID=Phyra71044;Parent=Phyra71044;rank=6 scaffold_1 . exon 802092 802440 . - . ID=Phyra71044.6;Parent=Phyra71044;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_1 . CDS 802534 803325 . - 0 ID=Phyra71044;Parent=Phyra71044;rank=5 scaffold_1 . exon 802534 803325 . - . ID=Phyra71044.5;Parent=Phyra71044;constitutive=1;rank=5 scaffold_1 . CDS 803413 803458 . - 0 ID=Phyra71044;Parent=Phyra71044;rank=4 scaffold_1 . exon 803413 803458 . - . ID=Phyra71044.4;Parent=Phyra71044;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 803536 803679 . - 0 ID=Phyra71044;Parent=Phyra71044;rank=3 scaffold_1 . exon 803536 803679 . - . ID=Phyra71044.3;Parent=Phyra71044;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1 . CDS 803770 803924 . - 0 ID=Phyra71044;Parent=Phyra71044;rank=2 scaffold_1 . exon 803770 803924 . - . ID=Phyra71044.2;Parent=Phyra71044;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 804026 804139 . - 0 ID=Phyra71044;Parent=Phyra71044;rank=1 scaffold_1 . exon 804026 804139 . - . ID=Phyra71044.1;Parent=Phyra71044;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 796956 797822 . + . ID=Phyra72813;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000255;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 796956 797822 . + . ID=Phyra72813;Parent=Phyra72813;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 796956 797822 . + 0 ID=Phyra72813;Parent=Phyra72813;rank=1 scaffold_1 . exon 796956 797822 . + . ID=Phyra72813.1;Parent=Phyra72813;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 798932 800887 . - . ID=Phyra72814;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000256;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 798932 800887 . - . ID=Phyra72814;Parent=Phyra72814;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 798932 799741 . - 0 ID=Phyra72814;Parent=Phyra72814;rank=3 scaffold_1 . exon 798932 799741 . - . ID=Phyra72814.3;Parent=Phyra72814;constitutive=1;rank=3 scaffold_1 . CDS 799791 800216 . - 0 ID=Phyra72814;Parent=Phyra72814;rank=2 scaffold_1 . exon 799791 800216 . - . ID=Phyra72814.2;Parent=Phyra72814;constitutive=1;rank=2 scaffold_1 . CDS 800420 800887 . - 0 ID=Phyra72814;Parent=Phyra72814;rank=1 scaffold_1 . exon 800420 800887 . - . ID=Phyra72814.1;Parent=Phyra72814;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 801019 801479 . + . ID=Phyra72815;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000257;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 801019 801479 . + . ID=Phyra72815;Parent=Phyra72815;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 801019 801109 . + 0 ID=Phyra72815;Parent=Phyra72815;rank=1 scaffold_1 . exon 801019 801109 . + . ID=Phyra72815.1;Parent=Phyra72815;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 801175 801479 . + 0 ID=Phyra72815;Parent=Phyra72815;rank=2 scaffold_1 . exon 801175 801479 . + . ID=Phyra72815.2;Parent=Phyra72815;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . biological_region 812309 812309 0.999 + . logic_name=eponine scaffold_1 . biological_region 812365 812366 0.999 + . logic_name=eponine scaffold_1 . biological_region 812802 812804 0.999 + . logic_name=eponine scaffold_1 . biological_region 813052 813054 0.999 + . logic_name=eponine scaffold_1 . biological_region 814875 814877 0.999 - . logic_name=eponine scaffold_1 . biological_region 814969 814969 0.999 + . logic_name=eponine scaffold_1 . biological_region 815059 815062 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 806298 806672 . + . ID=Phyra72817;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000259;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 806298 806672 . + . ID=Phyra72817;Parent=Phyra72817;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 806298 806672 . + 0 ID=Phyra72817;Parent=Phyra72817;rank=1 scaffold_1 . exon 806298 806672 . + . ID=Phyra72817.1;Parent=Phyra72817;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 807133 807585 . + . ID=Phyra72818;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000260;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 807133 807585 . + . ID=Phyra72818;Parent=Phyra72818;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 807133 807585 . + 0 ID=Phyra72818;Parent=Phyra72818;rank=1 scaffold_1 . exon 807133 807585 . + . ID=Phyra72818.1;Parent=Phyra72818;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 808476 812501 . - . ID=Phyra72819;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000261;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 808476 812501 . - . ID=Phyra72819;Parent=Phyra72819;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 808476 810231 . - 0 ID=Phyra72819;Parent=Phyra72819;rank=5 scaffold_1 . exon 808476 810231 . - . ID=Phyra72819.5;Parent=Phyra72819;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 810362 810377 . - 0 ID=Phyra72819;Parent=Phyra72819;rank=4 scaffold_1 . exon 810362 810377 . - . ID=Phyra72819.4;Parent=Phyra72819;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_1 . CDS 810479 811223 . - 0 ID=Phyra72819;Parent=Phyra72819;rank=3 scaffold_1 . exon 810479 811223 . - . ID=Phyra72819.3;Parent=Phyra72819;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 811244 811261 . - 0 ID=Phyra72819;Parent=Phyra72819;rank=2 scaffold_1 . exon 811244 811261 . - . ID=Phyra72819.2;Parent=Phyra72819;constitutive=1;rank=2 scaffold_1 . CDS 811371 812501 . - 0 ID=Phyra72819;Parent=Phyra72819;rank=1 scaffold_1 . exon 811371 812501 . - . ID=Phyra72819.1;Parent=Phyra72819;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 814399 816143 . + . ID=Phyra72820;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000262;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 814399 816143 . + . ID=Phyra72820;Parent=Phyra72820;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 814399 815049 . + 0 ID=Phyra72820;Parent=Phyra72820;rank=1 scaffold_1 . exon 814399 815049 . + . ID=Phyra72820.1;Parent=Phyra72820;constitutive=1;rank=1 scaffold_1 . CDS 815309 815373 . + 0 ID=Phyra72820;Parent=Phyra72820;rank=2 scaffold_1 . exon 815309 815373 . + . ID=Phyra72820.2;Parent=Phyra72820;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 815519 815951 . + 0 ID=Phyra72820;Parent=Phyra72820;rank=3 scaffold_1 . exon 815519 815951 . + . ID=Phyra72820.3;Parent=Phyra72820;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 816072 816143 . + 0 ID=Phyra72820;Parent=Phyra72820;rank=4 scaffold_1 . exon 816072 816143 . + . ID=Phyra72820.4;Parent=Phyra72820;constitutive=1;rank=4 scaffold_1 . repeat_region 817046 817389 . ? . description=dust scaffold_1 . repeat_region 819460 826669 . ? . description=dust scaffold_1 ensembl protein_coding_gene 817435 818338 . + . ID=Phyra72821;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000263;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 817435 818338 . + . ID=Phyra72821;Parent=Phyra72821;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 817435 818277 . + 0 ID=Phyra72821;Parent=Phyra72821;rank=1 scaffold_1 . exon 817435 818277 . + . ID=Phyra72821.1;Parent=Phyra72821;constitutive=1;rank=1 scaffold_1 . CDS 818324 818338 . + 0 ID=Phyra72821;Parent=Phyra72821;rank=2 scaffold_1 . exon 818324 818338 . + . ID=Phyra72821.2;Parent=Phyra72821;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 830266 831463 . + . ID=Phyra72822;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000264;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 830266 831463 . + . ID=Phyra72822;Parent=Phyra72822;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 830266 830582 . + 0 ID=Phyra72822;Parent=Phyra72822;rank=1 scaffold_1 . exon 830266 830582 . + . ID=Phyra72822.1;Parent=Phyra72822;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 830769 831252 . + 0 ID=Phyra72822;Parent=Phyra72822;rank=2 scaffold_1 . exon 830769 831252 . + . ID=Phyra72822.2;Parent=Phyra72822;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 831359 831463 . + 0 ID=Phyra72822;Parent=Phyra72822;rank=3 scaffold_1 . exon 831359 831463 . + . ID=Phyra72822.3;Parent=Phyra72822;constitutive=1;rank=3 scaffold_1 . biological_region 841540 841544 0.999 - . logic_name=eponine scaffold_1 . repeat_region 842403 842413 . ? . description=dust scaffold_1 . repeat_region 842533 842563 . ? . description=dust scaffold_1 . repeat_region 845061 845068 . ? . description=dust scaffold_1 ensembl pseudogene 836722 841018 . - . ID=Phyra38684;biotype=pseudogene;external_name=gwEuk.1.183.1;logic_name=jgi_phyra1 scaffold_1 ensembl pseudogene 836722 841018 . - . ID=Phyra38684;Parent=Phyra38684;biotype=pseudogene;logic_name=jgi_phyra1 scaffold_1 . exon 836722 837446 . - . ID=Phyra38684.4;Parent=Phyra38684;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_1 . exon 837483 838205 . - . ID=Phyra38684.3;Parent=Phyra38684;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1 . exon 839157 839955 . - . ID=Phyra38684.2;Parent=Phyra38684;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . exon 840049 841018 . - . ID=Phyra38684.1;Parent=Phyra38684;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 845650 846132 . - . ID=Phyra72824;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000266;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 845650 846132 . - . ID=Phyra72824;Parent=Phyra72824;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 845650 845924 . - 0 ID=Phyra72824;Parent=Phyra72824;rank=2 scaffold_1 . exon 845650 845924 . - . ID=Phyra72824.2;Parent=Phyra72824;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 846105 846132 . - 0 ID=Phyra72824;Parent=Phyra72824;rank=1 scaffold_1 ensembl protein_coding_gene 854708 857329 . - . ID=Phyra38691;biotype=protein_coding;external_name=gwEuk.1.190.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 854708 857329 . - . ID=Phyra38691;Parent=Phyra38691;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 854708 857329 . - 0 ID=Phyra38691;Parent=Phyra38691;rank=1 scaffold_1 . exon 854708 857329 . - . ID=Phyra38691.1;Parent=Phyra38691;constitutive=1;rank=1 scaffold_1 . exon 846105 846132 . - . ID=Phyra72824.1;Parent=Phyra72824;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 850260 851105 . + . ID=Phyra72825;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000267;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 850260 851105 . + . ID=Phyra72825;Parent=Phyra72825;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 850260 851105 . + 0 ID=Phyra72825;Parent=Phyra72825;rank=1 scaffold_1 . exon 850260 851105 . + . ID=Phyra72825.1;Parent=Phyra72825;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 851487 851954 . - . ID=Phyra72826;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000268;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 851487 851954 . - . ID=Phyra72826;Parent=Phyra72826;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 851487 851954 . - 0 ID=Phyra72826;Parent=Phyra72826;rank=1 scaffold_1 . exon 851487 851954 . - . ID=Phyra72826.1;Parent=Phyra72826;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 852942 854424 . + . ID=Phyra72827;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000269;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 852942 854424 . + . ID=Phyra72827;Parent=Phyra72827;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 852942 853044 . + 0 ID=Phyra72827;Parent=Phyra72827;rank=1 scaffold_1 . exon 852942 853044 . + . ID=Phyra72827.1;Parent=Phyra72827;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 853108 853192 . + 0 ID=Phyra72827;Parent=Phyra72827;rank=2 scaffold_1 . exon 853108 853192 . + . ID=Phyra72827.2;Parent=Phyra72827;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 853265 853366 . + 0 ID=Phyra72827;Parent=Phyra72827;rank=3 scaffold_1 . exon 853265 853366 . + . ID=Phyra72827.3;Parent=Phyra72827;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1 . CDS 853431 853521 . + 0 ID=Phyra72827;Parent=Phyra72827;rank=4 scaffold_1 . exon 853431 853521 . + . ID=Phyra72827.4;Parent=Phyra72827;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 853584 853661 . + 0 ID=Phyra72827;Parent=Phyra72827;rank=5 scaffold_1 . exon 853584 853661 . + . ID=Phyra72827.5;Parent=Phyra72827;constitutive=1;rank=5 scaffold_1 . CDS 853730 853809 . + 0 ID=Phyra72827;Parent=Phyra72827;rank=6 scaffold_1 . exon 853730 853809 . + . ID=Phyra72827.6;Parent=Phyra72827;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_1 . CDS 853889 853963 . + 0 ID=Phyra72827;Parent=Phyra72827;rank=7 scaffold_1 . exon 853889 853963 . + . ID=Phyra72827.7;Parent=Phyra72827;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_1 . CDS 854039 854117 . + 0 ID=Phyra72827;Parent=Phyra72827;rank=8 scaffold_1 . exon 854039 854117 . + . ID=Phyra72827.8;Parent=Phyra72827;constitutive=1;ensembl_phase=2;rank=8 scaffold_1 . CDS 854167 854424 . + 0 ID=Phyra72827;Parent=Phyra72827;rank=9 scaffold_1 . exon 854167 854424 . + . ID=Phyra72827.9;Parent=Phyra72827;constitutive=1;rank=9 scaffold_1 . repeat_region 857695 857704 . ? . description=dust scaffold_1 ensembl protein_coding_gene 859228 862162 . + . ID=Phyra72830;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000272;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 859228 862162 . + . ID=Phyra72830;Parent=Phyra72830;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 859228 860742 . + 0 ID=Phyra72830;Parent=Phyra72830;rank=1 scaffold_1 . exon 859228 860742 . + . ID=Phyra72830.1;Parent=Phyra72830;constitutive=1;rank=1 scaffold_1 . CDS 860903 860950 . + 0 ID=Phyra72830;Parent=Phyra72830;rank=2 scaffold_1 . exon 860903 860950 . + . ID=Phyra72830.2;Parent=Phyra72830;constitutive=1;rank=2 scaffold_1 . CDS 861019 861806 . + 0 ID=Phyra72830;Parent=Phyra72830;rank=3 scaffold_1 . exon 861019 861806 . + . ID=Phyra72830.3;Parent=Phyra72830;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 862008 862116 . + 0 ID=Phyra72830;Parent=Phyra72830;rank=4 scaffold_1 . exon 862008 862116 . + . ID=Phyra72830.4;Parent=Phyra72830;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 862154 862162 . + 0 ID=Phyra72830;Parent=Phyra72830;rank=5 scaffold_1 . exon 862154 862162 . + . ID=Phyra72830.5;Parent=Phyra72830;constitutive=1;rank=5 scaffold_1 ensembl protein_coding_gene 862513 863784 . - . ID=Phyra72831;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000273;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 862513 863784 . - . ID=Phyra72831;Parent=Phyra72831;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 862513 862925 . - 0 ID=Phyra72831;Parent=Phyra72831;rank=4 scaffold_1 . exon 862513 862925 . - . ID=Phyra72831.4;Parent=Phyra72831;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 863006 863264 . - 0 ID=Phyra72831;Parent=Phyra72831;rank=3 scaffold_1 . exon 863006 863264 . - . ID=Phyra72831.3;Parent=Phyra72831;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 863337 863588 . - 0 ID=Phyra72831;Parent=Phyra72831;rank=2 scaffold_1 . exon 863337 863588 . - . ID=Phyra72831.2;Parent=Phyra72831;constitutive=1;rank=2 scaffold_1 . CDS 863668 863784 . - 0 ID=Phyra72831;Parent=Phyra72831;rank=1 scaffold_1 . exon 863668 863784 . - . ID=Phyra72831.1;Parent=Phyra72831;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 864307 867551 . + . ID=Phyra72832;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000274;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 864307 867551 . + . ID=Phyra72832;Parent=Phyra72832;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 864307 864545 . + 0 ID=Phyra72832;Parent=Phyra72832;rank=1 scaffold_1 . exon 864307 864545 . + . ID=Phyra72832.1;Parent=Phyra72832;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 864643 864862 . + 0 ID=Phyra72832;Parent=Phyra72832;rank=2 scaffold_1 . exon 864643 864862 . + . ID=Phyra72832.2;Parent=Phyra72832;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 865031 865663 . + 0 ID=Phyra72832;Parent=Phyra72832;rank=3 scaffold_1 . exon 865031 865663 . + . ID=Phyra72832.3;Parent=Phyra72832;constitutive=1;rank=3 scaffold_1 . CDS 865796 865946 . + 0 ID=Phyra72832;Parent=Phyra72832;rank=4 scaffold_1 . exon 865796 865946 . + . ID=Phyra72832.4;Parent=Phyra72832;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 866035 867551 . + 0 ID=Phyra72832;Parent=Phyra72832;rank=5 scaffold_1 . biological_region 866617 866620 0.999 - . logic_name=eponine scaffold_1 . biological_region 866680 866687 0.999 - . logic_name=eponine scaffold_1 . biological_region 869165 869169 0.999 + . logic_name=eponine scaffold_1 . biological_region 869755 869756 0.999 - . logic_name=eponine scaffold_1 . biological_region 869944 869945 0.999 + . logic_name=eponine scaffold_1 . biological_region 870451 870462 0.999 + . logic_name=eponine scaffold_1 . biological_region 870562 870572 0.999 - . logic_name=eponine scaffold_1 . biological_region 870644 870645 0.999 - . logic_name=eponine scaffold_1 . biological_region 870728 870731 0.999 - . logic_name=eponine scaffold_1 . biological_region 871257 871260 0.999 + . logic_name=eponine scaffold_1 . exon 866035 867551 . + . ID=Phyra72832.5;Parent=Phyra72832;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 ensembl protein_coding_gene 868106 869461 . - . ID=Phyra72833;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000275;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 868106 869461 . - . ID=Phyra72833;Parent=Phyra72833;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 868106 869461 . - 0 ID=Phyra72833;Parent=Phyra72833;rank=1 scaffold_1 . exon 868106 869461 . - . ID=Phyra72833.1;Parent=Phyra72833;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 873461 875227 . + . ID=Phyra72834;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000276;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 873461 875227 . + . ID=Phyra72834;Parent=Phyra72834;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 873461 873604 . + 0 ID=Phyra72834;Parent=Phyra72834;rank=1 scaffold_1 . exon 873461 873604 . + . ID=Phyra72834.1;Parent=Phyra72834;constitutive=1;rank=1 scaffold_1 . CDS 873669 873731 . + 0 ID=Phyra72834;Parent=Phyra72834;rank=2 scaffold_1 . exon 873669 873731 . + . ID=Phyra72834.2;Parent=Phyra72834;constitutive=1;rank=2 scaffold_1 . CDS 873806 874100 . + 0 ID=Phyra72834;Parent=Phyra72834;rank=3 scaffold_1 . exon 873806 874100 . + . ID=Phyra72834.3;Parent=Phyra72834;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 874221 875227 . + 0 ID=Phyra72834;Parent=Phyra72834;rank=4 scaffold_1 . exon 874221 875227 . + . ID=Phyra72834.4;Parent=Phyra72834;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 ensembl protein_coding_gene 875377 876635 . - . ID=Phyra72835;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000277;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 875377 876635 . - . ID=Phyra72835;Parent=Phyra72835;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 875377 875697 . - 0 ID=Phyra72835;Parent=Phyra72835;rank=3 scaffold_1 . exon 875377 875697 . - . ID=Phyra72835.3;Parent=Phyra72835;constitutive=1;rank=3 scaffold_1 . CDS 875783 876290 . - 0 ID=Phyra72835;Parent=Phyra72835;rank=2 scaffold_1 . exon 875783 876290 . - . ID=Phyra72835.2;Parent=Phyra72835;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 876382 876635 . - 0 ID=Phyra72835;Parent=Phyra72835;rank=1 scaffold_1 . repeat_region 877515 877552 . ? . description=trf scaffold_1 . repeat_region 879732 879740 . ? . description=dust scaffold_1 . exon 876382 876635 . - . ID=Phyra72835.1;Parent=Phyra72835;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 877200 878978 . + . ID=Phyra72836;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000278;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 877200 878978 . + . ID=Phyra72836;Parent=Phyra72836;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 877200 877320 . + 0 ID=Phyra72836;Parent=Phyra72836;rank=1 scaffold_1 . exon 877200 877320 . + . ID=Phyra72836.1;Parent=Phyra72836;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 877434 877503 . + 0 ID=Phyra72836;Parent=Phyra72836;rank=2 scaffold_1 . exon 877434 877503 . + . ID=Phyra72836.2;Parent=Phyra72836;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 877567 877685 . + 0 ID=Phyra72836;Parent=Phyra72836;rank=3 scaffold_1 . exon 877567 877685 . + . ID=Phyra72836.3;Parent=Phyra72836;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 877770 877824 . + 0 ID=Phyra72836;Parent=Phyra72836;rank=4 scaffold_1 . exon 877770 877824 . + . ID=Phyra72836.4;Parent=Phyra72836;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_1 . CDS 877923 878065 . + 0 ID=Phyra72836;Parent=Phyra72836;rank=5 scaffold_1 . exon 877923 878065 . + . ID=Phyra72836.5;Parent=Phyra72836;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 878139 878248 . + 0 ID=Phyra72836;Parent=Phyra72836;rank=6 scaffold_1 . exon 878139 878248 . + . ID=Phyra72836.6;Parent=Phyra72836;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 878323 878393 . + 0 ID=Phyra72836;Parent=Phyra72836;rank=7 scaffold_1 . exon 878323 878393 . + . ID=Phyra72836.7;Parent=Phyra72836;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_1 . CDS 878460 878572 . + 0 ID=Phyra72836;Parent=Phyra72836;rank=8 scaffold_1 . exon 878460 878572 . + . ID=Phyra72836.8;Parent=Phyra72836;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_1 . CDS 878646 878735 . + 0 ID=Phyra72836;Parent=Phyra72836;rank=9 scaffold_1 . exon 878646 878735 . + . ID=Phyra72836.9;Parent=Phyra72836;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_1 . CDS 878818 878978 . + 0 ID=Phyra72836;Parent=Phyra72836;rank=10 scaffold_1 . exon 878818 878978 . + . ID=Phyra72836.10;Parent=Phyra72836;constitutive=1;ensembl_phase=1;rank=10 scaffold_1 ensembl protein_coding_gene 882425 883023 . + . ID=Phyra72837;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000279;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 882425 883023 . + . ID=Phyra72837;Parent=Phyra72837;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 882425 882681 . + 0 ID=Phyra72837;Parent=Phyra72837;rank=1 scaffold_1 . exon 882425 882681 . + . ID=Phyra72837.1;Parent=Phyra72837;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 882754 882869 . + 0 ID=Phyra72837;Parent=Phyra72837;rank=2 scaffold_1 . exon 882754 882869 . + . ID=Phyra72837.2;Parent=Phyra72837;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 882953 883023 . + 0 ID=Phyra72837;Parent=Phyra72837;rank=3 scaffold_1 . exon 882953 883023 . + . ID=Phyra72837.3;Parent=Phyra72837;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 ensembl protein_coding_gene 883933 884742 . + . ID=Phyra72838;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000280;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 883933 884742 . + . ID=Phyra72838;Parent=Phyra72838;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 883933 884742 . + 0 ID=Phyra72838;Parent=Phyra72838;rank=1 scaffold_1 . exon 883933 884742 . + . ID=Phyra72838.1;Parent=Phyra72838;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 885392 885990 . - . ID=Phyra72839;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000281;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 885392 885990 . - . ID=Phyra72839;Parent=Phyra72839;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 885392 885462 . - 0 ID=Phyra72839;Parent=Phyra72839;rank=3 scaffold_1 . exon 885392 885462 . - . ID=Phyra72839.3;Parent=Phyra72839;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 885546 885661 . - 0 ID=Phyra72839;Parent=Phyra72839;rank=2 scaffold_1 . exon 885546 885661 . - . ID=Phyra72839.2;Parent=Phyra72839;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 885734 885990 . - 0 ID=Phyra72839;Parent=Phyra72839;rank=1 scaffold_1 . exon 885734 885990 . - . ID=Phyra72839.1;Parent=Phyra72839;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . biological_region 885831 885837 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 888691 889857 . + . ID=Phyra38700;biotype=protein_coding;external_name=gwEuk.1.199.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 888691 889857 . + . ID=Phyra38700;Parent=Phyra38700;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 888691 888782 . + 0 ID=Phyra38700;Parent=Phyra38700;rank=1 scaffold_1 . exon 888691 888782 . + . ID=Phyra38700.1;Parent=Phyra38700;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 888853 888904 . + 0 ID=Phyra38700;Parent=Phyra38700;rank=2 scaffold_1 . exon 888853 888904 . + . ID=Phyra38700.2;Parent=Phyra38700;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 888970 889857 . + 0 ID=Phyra38700;Parent=Phyra38700;rank=3 scaffold_1 . exon 888970 889857 . + . ID=Phyra38700.3;Parent=Phyra38700;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 887182 887854 . + . ID=Phyra72840;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000282;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 887182 887854 . + . ID=Phyra72840;Parent=Phyra72840;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 887182 887319 . + 0 ID=Phyra72840;Parent=Phyra72840;rank=1 scaffold_1 . exon 887182 887319 . + . ID=Phyra72840.1;Parent=Phyra72840;constitutive=1;rank=1 scaffold_1 . CDS 887392 887504 . + 0 ID=Phyra72840;Parent=Phyra72840;rank=2 scaffold_1 . exon 887392 887504 . + . ID=Phyra72840.2;Parent=Phyra72840;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 887591 887706 . + 0 ID=Phyra72840;Parent=Phyra72840;rank=3 scaffold_1 . exon 887591 887706 . + . ID=Phyra72840.3;Parent=Phyra72840;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 887784 887854 . + 0 ID=Phyra72840;Parent=Phyra72840;rank=4 scaffold_1 . exon 887784 887854 . + . ID=Phyra72840.4;Parent=Phyra72840;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 ensembl protein_coding_gene 893678 894372 . + . ID=Phyra72843;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000285;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 893678 894372 . + . ID=Phyra72843;Parent=Phyra72843;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 893678 893923 . + 0 ID=Phyra72843;Parent=Phyra72843;rank=1 scaffold_1 . exon 893678 893923 . + . ID=Phyra72843.1;Parent=Phyra72843;constitutive=1;rank=1 scaffold_1 . CDS 893997 894338 . + 0 ID=Phyra72843;Parent=Phyra72843;rank=2 scaffold_1 . exon 893997 894338 . + . ID=Phyra72843.2;Parent=Phyra72843;constitutive=1;rank=2 scaffold_1 . CDS 894361 894372 . + 0 ID=Phyra72843;Parent=Phyra72843;rank=3 scaffold_1 . exon 894361 894372 . + . ID=Phyra72843.3;Parent=Phyra72843;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 890058 891071 . - . ID=Phyra93365;biotype=protein_coding;external_name=C_scaffold_1000142;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 890058 891071 . - . ID=Phyra93365;Parent=Phyra93365;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 890058 890108 . - 0 ID=Phyra93365;Parent=Phyra93365;rank=2 scaffold_1 . exon 890058 890108 . - . ID=Phyra93365.2;Parent=Phyra93365;constitutive=1;rank=2 scaffold_1 . CDS 890181 891071 . - 0 ID=Phyra93365;Parent=Phyra93365;rank=1 scaffold_1 . exon 890181 891071 . - . ID=Phyra93365.1;Parent=Phyra93365;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 891479 893388 . - . ID=Phyra93366;biotype=protein_coding;external_name=C_scaffold_1000143;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 891479 893388 . - . ID=Phyra93366;Parent=Phyra93366;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 891479 891793 . - 0 ID=Phyra93366;Parent=Phyra93366;rank=9 scaffold_1 . exon 891479 891793 . - . ID=Phyra93366.9;Parent=Phyra93366;constitutive=1;rank=9 scaffold_1 . CDS 891943 892005 . - 0 ID=Phyra93366;Parent=Phyra93366;rank=8 scaffold_1 . exon 891943 892005 . - . ID=Phyra93366.8;Parent=Phyra93366;constitutive=1;rank=8 scaffold_1 . CDS 892108 892270 . - 0 ID=Phyra93366;Parent=Phyra93366;rank=7 scaffold_1 . exon 892108 892270 . - . ID=Phyra93366.7;Parent=Phyra93366;constitutive=1;ensembl_phase=2;rank=7 scaffold_1 . CDS 892343 892387 . - 0 ID=Phyra93366;Parent=Phyra93366;rank=6 scaffold_1 . exon 892343 892387 . - . ID=Phyra93366.6;Parent=Phyra93366;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_1 . CDS 892608 892720 . - 0 ID=Phyra93366;Parent=Phyra93366;rank=5 scaffold_1 . exon 892608 892720 . - . ID=Phyra93366.5;Parent=Phyra93366;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_1 . CDS 892790 892864 . - 0 ID=Phyra93366;Parent=Phyra93366;rank=4 scaffold_1 . exon 892790 892864 . - . ID=Phyra93366.4;Parent=Phyra93366;constitutive=1;rank=4 scaffold_1 . CDS 892928 893006 . - 0 ID=Phyra93366;Parent=Phyra93366;rank=3 scaffold_1 . exon 892928 893006 . - . ID=Phyra93366.3;Parent=Phyra93366;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 893086 893183 . - 0 ID=Phyra93366;Parent=Phyra93366;rank=2 scaffold_1 . exon 893086 893183 . - . ID=Phyra93366.2;Parent=Phyra93366;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 893308 893388 . - 0 ID=Phyra93366;Parent=Phyra93366;rank=1 scaffold_1 . exon 893308 893388 . - . ID=Phyra93366.1;Parent=Phyra93366;constitutive=1;rank=1 scaffold_1 . repeat_region 901644 901672 . ? . description=trf scaffold_1 . repeat_region 902346 902394 . ? . description=trf scaffold_1 ensembl protein_coding_gene 896793 897767 . + . ID=Phyra38706;biotype=protein_coding;external_name=gwEuk.1.205.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 896793 897767 . + . ID=Phyra38706;Parent=Phyra38706;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 896793 897062 . + 0 ID=Phyra38706;Parent=Phyra38706;rank=1 scaffold_1 . exon 896793 897062 . + . ID=Phyra38706.1;Parent=Phyra38706;constitutive=1;rank=1 scaffold_1 . CDS 897267 897767 . + 0 ID=Phyra38706;Parent=Phyra38706;rank=2 scaffold_1 . exon 897267 897767 . + . ID=Phyra38706.2;Parent=Phyra38706;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 899784 901634 . - . ID=Phyra71046;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000026;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 899784 901634 . - . ID=Phyra71046;Parent=Phyra71046;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 899784 901634 . - 0 ID=Phyra71046;Parent=Phyra71046;rank=1 scaffold_1 . exon 899784 901634 . - . ID=Phyra71046.1;Parent=Phyra71046;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 902637 903707 . - . ID=Phyra71047;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000027;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 902637 903707 . - . ID=Phyra71047;Parent=Phyra71047;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 902637 902683 . - 0 ID=Phyra71047;Parent=Phyra71047;rank=2 scaffold_1 . exon 902637 902683 . - . ID=Phyra71047.2;Parent=Phyra71047;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 902708 903707 . - 0 ID=Phyra71047;Parent=Phyra71047;rank=1 scaffold_1 . exon 902708 903707 . - . ID=Phyra71047.1;Parent=Phyra71047;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 898015 899388 . + . ID=Phyra72845;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000287;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 898015 899388 . + . ID=Phyra72845;Parent=Phyra72845;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 898015 899388 . + 0 ID=Phyra72845;Parent=Phyra72845;rank=1 scaffold_1 . exon 898015 899388 . + . ID=Phyra72845.1;Parent=Phyra72845;constitutive=1;rank=1 scaffold_1 . repeat_region 914304 914312 . ? . description=dust scaffold_1 . repeat_region 914470 914480 . ? . description=dust scaffold_1 ensembl protein_coding_gene 911788 912790 . - . ID=Phyra38724;biotype=protein_coding;external_name=gwEuk.1.223.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 911788 912790 . - . ID=Phyra38724;Parent=Phyra38724;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 911788 911922 . - 0 ID=Phyra38724;Parent=Phyra38724;rank=5 scaffold_1 . exon 911788 911922 . - . ID=Phyra38724.5;Parent=Phyra38724;constitutive=1;rank=5 scaffold_1 . CDS 911981 912095 . - 0 ID=Phyra38724;Parent=Phyra38724;rank=4 scaffold_1 . exon 911981 912095 . - . ID=Phyra38724.4;Parent=Phyra38724;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 912168 912408 . - 0 ID=Phyra38724;Parent=Phyra38724;rank=3 scaffold_1 . exon 912168 912408 . - . ID=Phyra38724.3;Parent=Phyra38724;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1 . CDS 912476 912599 . - 0 ID=Phyra38724;Parent=Phyra38724;rank=2 scaffold_1 . exon 912476 912599 . - . ID=Phyra38724.2;Parent=Phyra38724;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 912668 912790 . - 0 ID=Phyra38724;Parent=Phyra38724;rank=1 scaffold_1 . exon 912668 912790 . - . ID=Phyra38724.1;Parent=Phyra38724;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 915253 916554 . - . ID=Phyra71048;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000028;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 915253 916554 . - . ID=Phyra71048;Parent=Phyra71048;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 915253 916554 . - 0 ID=Phyra71048;Parent=Phyra71048;rank=1 scaffold_1 . exon 915253 916554 . - . ID=Phyra71048.1;Parent=Phyra71048;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 908021 908895 . + . ID=Phyra72848;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000290;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 908021 908895 . + . ID=Phyra72848;Parent=Phyra72848;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 908021 908162 . + 0 ID=Phyra72848;Parent=Phyra72848;rank=1 scaffold_1 . exon 908021 908162 . + . ID=Phyra72848.1;Parent=Phyra72848;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 908234 908391 . + 0 ID=Phyra72848;Parent=Phyra72848;rank=2 scaffold_1 . exon 908234 908391 . + . ID=Phyra72848.2;Parent=Phyra72848;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 908452 908553 . + 0 ID=Phyra72848;Parent=Phyra72848;rank=3 scaffold_1 . exon 908452 908553 . + . ID=Phyra72848.3;Parent=Phyra72848;constitutive=1;rank=3 scaffold_1 . CDS 908616 908732 . + 0 ID=Phyra72848;Parent=Phyra72848;rank=4 scaffold_1 . exon 908616 908732 . + . ID=Phyra72848.4;Parent=Phyra72848;constitutive=1;rank=4 scaffold_1 . CDS 908815 908895 . + 0 ID=Phyra72848;Parent=Phyra72848;rank=5 scaffold_1 . exon 908815 908895 . + . ID=Phyra72848.5;Parent=Phyra72848;constitutive=1;rank=5 scaffold_1 ensembl protein_coding_gene 909498 910026 . + . ID=Phyra72849;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000291;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 909498 910026 . + . ID=Phyra72849;Parent=Phyra72849;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 909498 909908 . + 0 ID=Phyra72849;Parent=Phyra72849;rank=1 scaffold_1 . exon 909498 909908 . + . ID=Phyra72849.1;Parent=Phyra72849;constitutive=1;rank=1 scaffold_1 . CDS 909967 910026 . + 0 ID=Phyra72849;Parent=Phyra72849;rank=2 scaffold_1 . exon 909967 910026 . + . ID=Phyra72849.2;Parent=Phyra72849;constitutive=1;rank=2 scaffold_1 . biological_region 916159 916162 0.999 - . logic_name=eponine scaffold_1 . biological_region 917202 917206 0.999 + . logic_name=eponine scaffold_1 . biological_region 917226 917227 0.999 + . logic_name=eponine scaffold_1 . biological_region 917331 917335 0.999 - . logic_name=eponine scaffold_1 . biological_region 917390 917392 0.999 - . logic_name=eponine scaffold_1 . biological_region 917412 917413 0.999 + . logic_name=eponine scaffold_1 . biological_region 917443 917447 0.999 + . logic_name=eponine scaffold_1 . biological_region 917547 917549 0.999 + . logic_name=eponine scaffold_1 . biological_region 917592 917597 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 917089 919931 . + . ID=Phyra72852;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000294;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 917089 919931 . + . ID=Phyra72852;Parent=Phyra72852;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 917089 918027 . + 0 ID=Phyra72852;Parent=Phyra72852;rank=1 scaffold_1 . exon 917089 918027 . + . ID=Phyra72852.1;Parent=Phyra72852;constitutive=1;rank=1 scaffold_1 . CDS 918095 918331 . + 0 ID=Phyra72852;Parent=Phyra72852;rank=2 scaffold_1 . exon 918095 918331 . + . ID=Phyra72852.2;Parent=Phyra72852;constitutive=1;rank=2 scaffold_1 . CDS 918408 918850 . + 0 ID=Phyra72852;Parent=Phyra72852;rank=3 scaffold_1 . exon 918408 918850 . + . ID=Phyra72852.3;Parent=Phyra72852;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 918922 919304 . + 0 ID=Phyra72852;Parent=Phyra72852;rank=4 scaffold_1 . exon 918922 919304 . + . ID=Phyra72852.4;Parent=Phyra72852;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 919380 919600 . + 0 ID=Phyra72852;Parent=Phyra72852;rank=5 scaffold_1 . exon 919380 919600 . + . ID=Phyra72852.5;Parent=Phyra72852;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 919665 919931 . + 0 ID=Phyra72852;Parent=Phyra72852;rank=6 scaffold_1 . exon 919665 919931 . + . ID=Phyra72852.6;Parent=Phyra72852;constitutive=1;rank=6 scaffold_1 ensembl protein_coding_gene 922470 926801 . + . ID=Phyra72853;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000295;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 922470 926801 . + . ID=Phyra72853;Parent=Phyra72853;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 922470 926801 . + 0 ID=Phyra72853;Parent=Phyra72853;rank=1 scaffold_1 . exon 922470 926801 . + . ID=Phyra72853.1;Parent=Phyra72853;constitutive=1;rank=1 scaffold_1 . repeat_region 928162 928203 . ? . description=trf scaffold_1 . repeat_region 935158 935165 . ? . description=dust scaffold_1 . repeat_region 935233 935275 . ? . description=trf scaffold_1 ensembl protein_coding_gene 930909 931763 . + . ID=Phyra71049;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000029;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 930909 931763 . + . ID=Phyra71049;Parent=Phyra71049;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 930909 931763 . + 0 ID=Phyra71049;Parent=Phyra71049;rank=1 scaffold_1 . exon 930909 931763 . + . ID=Phyra71049.1;Parent=Phyra71049;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 928975 930426 . + . ID=Phyra72854;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000296;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 928975 930426 . + . ID=Phyra72854;Parent=Phyra72854;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 928975 930426 . + 0 ID=Phyra72854;Parent=Phyra72854;rank=1 scaffold_1 . exon 928975 930426 . + . ID=Phyra72854.1;Parent=Phyra72854;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 931897 933428 . - . ID=Phyra72856;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000298;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 931897 933428 . - . ID=Phyra72856;Parent=Phyra72856;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 931897 932217 . - 0 ID=Phyra72856;Parent=Phyra72856;rank=3 scaffold_1 . exon 931897 932217 . - . ID=Phyra72856.3;Parent=Phyra72856;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1 . CDS 932272 932450 . - 0 ID=Phyra72856;Parent=Phyra72856;rank=2 scaffold_1 . exon 932272 932450 . - . ID=Phyra72856.2;Parent=Phyra72856;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 932520 933428 . - 0 ID=Phyra72856;Parent=Phyra72856;rank=1 scaffold_1 . exon 932520 933428 . - . ID=Phyra72856.1;Parent=Phyra72856;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 933743 934922 . - . ID=Phyra72857;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000299;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 933743 934922 . - . ID=Phyra72857;Parent=Phyra72857;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 933743 934563 . - 0 ID=Phyra72857;Parent=Phyra72857;rank=2 scaffold_1 . exon 933743 934563 . - . ID=Phyra72857.2;Parent=Phyra72857;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 934634 934922 . - 0 ID=Phyra72857;Parent=Phyra72857;rank=1 scaffold_1 . exon 934634 934922 . - . ID=Phyra72857.1;Parent=Phyra72857;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . biological_region 936475 936478 0.999 - . logic_name=eponine scaffold_1 . biological_region 936515 936518 0.999 - . logic_name=eponine scaffold_1 . biological_region 943698 943701 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 936170 938495 . - . ID=Phyra72858;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000300;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 936170 938495 . - . ID=Phyra72858;Parent=Phyra72858;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 936170 936283 . - 0 ID=Phyra72858;Parent=Phyra72858;rank=8 scaffold_1 . exon 936170 936283 . - . ID=Phyra72858.8;Parent=Phyra72858;constitutive=1;rank=8 scaffold_1 . CDS 936363 936738 . - 0 ID=Phyra72858;Parent=Phyra72858;rank=7 scaffold_1 . exon 936363 936738 . - . ID=Phyra72858.7;Parent=Phyra72858;constitutive=1;ensembl_phase=2;rank=7 scaffold_1 . CDS 936849 936868 . - 0 ID=Phyra72858;Parent=Phyra72858;rank=6 scaffold_1 . exon 936849 936868 . - . ID=Phyra72858.6;Parent=Phyra72858;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_1 . CDS 936913 936932 . - 0 ID=Phyra72858;Parent=Phyra72858;rank=5 scaffold_1 . exon 936913 936932 . - . ID=Phyra72858.5;Parent=Phyra72858;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 937034 937229 . - 0 ID=Phyra72858;Parent=Phyra72858;rank=4 scaffold_1 . exon 937034 937229 . - . ID=Phyra72858.4;Parent=Phyra72858;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 937320 937478 . - 0 ID=Phyra72858;Parent=Phyra72858;rank=3 scaffold_1 . exon 937320 937478 . - . ID=Phyra72858.3;Parent=Phyra72858;constitutive=1;rank=3 scaffold_1 . CDS 937546 938309 . - 0 ID=Phyra72858;Parent=Phyra72858;rank=2 scaffold_1 . exon 937546 938309 . - . ID=Phyra72858.2;Parent=Phyra72858;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 938420 938495 . - 0 ID=Phyra72858;Parent=Phyra72858;rank=1 scaffold_1 . exon 938420 938495 . - . ID=Phyra72858.1;Parent=Phyra72858;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 939082 942273 . - . ID=Phyra72859;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000301;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 939082 942273 . - . ID=Phyra72859;Parent=Phyra72859;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 939082 939479 . - 0 ID=Phyra72859;Parent=Phyra72859;rank=4 scaffold_1 . exon 939082 939479 . - . ID=Phyra72859.4;Parent=Phyra72859;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 939552 939656 . - 0 ID=Phyra72859;Parent=Phyra72859;rank=3 scaffold_1 . exon 939552 939656 . - . ID=Phyra72859.3;Parent=Phyra72859;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 939746 942164 . - 0 ID=Phyra72859;Parent=Phyra72859;rank=2 scaffold_1 . exon 939746 942164 . - . ID=Phyra72859.2;Parent=Phyra72859;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 942259 942273 . - 0 ID=Phyra72859;Parent=Phyra72859;rank=1 scaffold_1 . exon 942259 942273 . - . ID=Phyra72859.1;Parent=Phyra72859;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 942593 943459 . - . ID=Phyra72860;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000302;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 942593 943459 . - . ID=Phyra72860;Parent=Phyra72860;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 942593 943459 . - 0 ID=Phyra72860;Parent=Phyra72860;rank=1 scaffold_1 . exon 942593 943459 . - . ID=Phyra72860.1;Parent=Phyra72860;constitutive=1;rank=1 scaffold_1 . repeat_region 954298 954368 . ? . description=trf scaffold_1 . repeat_region 954303 954352 . ? . description=trf scaffold_1 . repeat_region 954314 954351 . ? . description=trf scaffold_1 . repeat_region 954318 954363 . ? . description=trf scaffold_1 . repeat_region 954918 954959 . ? . description=trf scaffold_1 ensembl protein_coding_gene 948173 949273 . - . ID=Phyra71050;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000030;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 948173 949273 . - . ID=Phyra71050;Parent=Phyra71050;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 948173 948223 . - 0 ID=Phyra71050;Parent=Phyra71050;rank=2 scaffold_1 . exon 948173 948223 . - . ID=Phyra71050.2;Parent=Phyra71050;constitutive=1;rank=2 scaffold_1 . CDS 948278 949273 . - 0 ID=Phyra71050;Parent=Phyra71050;rank=1 scaffold_1 . exon 948278 949273 . - . ID=Phyra71050.1;Parent=Phyra71050;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 947362 947746 . + . ID=Phyra72861;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000303;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 947362 947746 . + . ID=Phyra72861;Parent=Phyra72861;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 947362 947538 . + 0 ID=Phyra72861;Parent=Phyra72861;rank=1 scaffold_1 . exon 947362 947538 . + . ID=Phyra72861.1;Parent=Phyra72861;constitutive=1;rank=1 scaffold_1 . CDS 947603 947746 . + 0 ID=Phyra72861;Parent=Phyra72861;rank=2 scaffold_1 . exon 947603 947746 . + . ID=Phyra72861.2;Parent=Phyra72861;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 949646 952435 . + . ID=Phyra72863;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000305;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 949646 952435 . + . ID=Phyra72863;Parent=Phyra72863;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 949646 952435 . + 0 ID=Phyra72863;Parent=Phyra72863;rank=1 scaffold_1 . exon 949646 952435 . + . ID=Phyra72863.1;Parent=Phyra72863;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 954283 959867 . - . ID=Phyra72864;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000306;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 954283 959867 . - . ID=Phyra72864;Parent=Phyra72864;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 954283 956265 . - 0 ID=Phyra72864;Parent=Phyra72864;rank=5 scaffold_1 . exon 954283 956265 . - . ID=Phyra72864.5;Parent=Phyra72864;constitutive=1;rank=5 scaffold_1 . CDS 956529 957833 . - 0 ID=Phyra72864;Parent=Phyra72864;rank=4 scaffold_1 . CDS 957967 959377 . - 0 ID=Phyra72864;Parent=Phyra72864;rank=3 scaffold_1 . CDS 959460 959587 . - 0 ID=Phyra72864;Parent=Phyra72864;rank=2 scaffold_1 . CDS 959658 959867 . - 0 ID=Phyra72864;Parent=Phyra72864;rank=1 scaffold_1 . repeat_region 955501 955534 . ? . description=dust scaffold_1 . biological_region 955617 955621 0.999 - . logic_name=eponine scaffold_1 . biological_region 955842 955844 0.999 - . logic_name=eponine scaffold_1 . biological_region 958329 958332 0.999 + . logic_name=eponine scaffold_1 . biological_region 960208 960212 0.999 - . logic_name=eponine scaffold_1 . biological_region 961218 961220 0.999 - . logic_name=eponine scaffold_1 . repeat_region 961257 961306 . ? . description=dust scaffold_1 ensembl protein_coding_gene 960054 961177 . + . ID=Phyra38740;biotype=protein_coding;external_name=gwEuk.1.239.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 960054 961177 . + . ID=Phyra38740;Parent=Phyra38740;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 960054 960204 . + 0 ID=Phyra38740;Parent=Phyra38740;rank=1 scaffold_1 . exon 960054 960204 . + . ID=Phyra38740.1;Parent=Phyra38740;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 960287 960510 . + 0 ID=Phyra38740;Parent=Phyra38740;rank=2 scaffold_1 . exon 960287 960510 . + . ID=Phyra38740.2;Parent=Phyra38740;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 960596 961177 . + 0 ID=Phyra38740;Parent=Phyra38740;rank=3 scaffold_1 . exon 960596 961177 . + . ID=Phyra38740.3;Parent=Phyra38740;constitutive=1;rank=3 scaffold_1 . exon 956529 957833 . - . ID=Phyra72864.4;Parent=Phyra72864;constitutive=1;rank=4 scaffold_1 . exon 957967 959377 . - . ID=Phyra72864.3;Parent=Phyra72864;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . exon 959460 959587 . - . ID=Phyra72864.2;Parent=Phyra72864;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . exon 959658 959867 . - . ID=Phyra72864.1;Parent=Phyra72864;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 961321 962985 . - . ID=Phyra72866;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000308;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 961321 962985 . - . ID=Phyra72866;Parent=Phyra72866;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 961321 962985 . - 0 ID=Phyra72866;Parent=Phyra72866;rank=1 scaffold_1 . exon 961321 962985 . - . ID=Phyra72866.1;Parent=Phyra72866;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 964871 966502 . + . ID=Phyra72867;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000309;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 964871 966502 . + . ID=Phyra72867;Parent=Phyra72867;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 964871 966502 . + 0 ID=Phyra72867;Parent=Phyra72867;rank=1 scaffold_1 . exon 964871 966502 . + . ID=Phyra72867.1;Parent=Phyra72867;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 969347 969854 . - . ID=Phyra72868;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000310;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 969347 969854 . - . ID=Phyra72868;Parent=Phyra72868;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 969347 969361 . - 0 ID=Phyra72868;Parent=Phyra72868;rank=4 scaffold_1 . exon 969347 969361 . - . ID=Phyra72868.4;Parent=Phyra72868;constitutive=1;rank=4 scaffold_1 . CDS 969385 969624 . - 0 ID=Phyra72868;Parent=Phyra72868;rank=3 scaffold_1 . exon 969385 969624 . - . ID=Phyra72868.3;Parent=Phyra72868;constitutive=1;rank=3 scaffold_1 . CDS 969691 969732 . - 0 ID=Phyra72868;Parent=Phyra72868;rank=2 scaffold_1 . exon 969691 969732 . - . ID=Phyra72868.2;Parent=Phyra72868;constitutive=1;rank=2 scaffold_1 . CDS 969801 969854 . - 0 ID=Phyra72868;Parent=Phyra72868;rank=1 scaffold_1 . exon 969801 969854 . - . ID=Phyra72868.1;Parent=Phyra72868;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 970209 972547 . + . ID=Phyra72869;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000311;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 970209 972547 . + . ID=Phyra72869;Parent=Phyra72869;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 970209 972228 . + 0 ID=Phyra72869;Parent=Phyra72869;rank=1 scaffold_1 . exon 970209 972228 . + . ID=Phyra72869.1;Parent=Phyra72869;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 972276 972547 . + 0 ID=Phyra72869;Parent=Phyra72869;rank=2 scaffold_1 . exon 972276 972547 . + . ID=Phyra72869.2;Parent=Phyra72869;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 975185 978385 . - . ID=Phyra72870;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000312;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 975185 978385 . - . ID=Phyra72870;Parent=Phyra72870;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 975185 978385 . - 0 ID=Phyra72870;Parent=Phyra72870;rank=1 scaffold_1 . exon 975185 978385 . - . ID=Phyra72870.1;Parent=Phyra72870;constitutive=1;rank=1 scaffold_1 . biological_region 984365 984366 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 982486 983789 . - . ID=Phyra38752;biotype=protein_coding;external_name=gwEuk.1.251.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 982486 983789 . - . ID=Phyra38752;Parent=Phyra38752;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 982486 983213 . - 0 ID=Phyra38752;Parent=Phyra38752;rank=2 scaffold_1 . exon 982486 983213 . - . ID=Phyra38752.2;Parent=Phyra38752;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 983318 983789 . - 0 ID=Phyra38752;Parent=Phyra38752;rank=1 scaffold_1 . exon 983318 983789 . - . ID=Phyra38752.1;Parent=Phyra38752;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 978525 978902 . + . ID=Phyra72871;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000313;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 978525 978902 . + . ID=Phyra72871;Parent=Phyra72871;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 978525 978902 . + 0 ID=Phyra72871;Parent=Phyra72871;rank=1 scaffold_1 . exon 978525 978902 . + . ID=Phyra72871.1;Parent=Phyra72871;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 979838 981204 . + . ID=Phyra72872;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000314;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 979838 981204 . + . ID=Phyra72872;Parent=Phyra72872;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 979838 980354 . + 0 ID=Phyra72872;Parent=Phyra72872;rank=1 scaffold_1 . exon 979838 980354 . + . ID=Phyra72872.1;Parent=Phyra72872;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 980459 981204 . + 0 ID=Phyra72872;Parent=Phyra72872;rank=2 scaffold_1 . exon 980459 981204 . + . ID=Phyra72872.2;Parent=Phyra72872;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . repeat_region 985552 985559 . ? . description=dust scaffold_1 . repeat_region 991355 991376 . ? . description=trf scaffold_1 ensembl protein_coding_gene 990090 990920 . - . ID=Phyra71052;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000032;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 990090 990920 . - . ID=Phyra71052;Parent=Phyra71052;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 990090 990185 . - 0 ID=Phyra71052;Parent=Phyra71052;rank=3 scaffold_1 . exon 990090 990185 . - . ID=Phyra71052.3;Parent=Phyra71052;constitutive=1;rank=3 scaffold_1 . CDS 990238 990510 . - 0 ID=Phyra71052;Parent=Phyra71052;rank=2 scaffold_1 . exon 990238 990510 . - . ID=Phyra71052.2;Parent=Phyra71052;constitutive=1;rank=2 scaffold_1 . CDS 990576 990920 . - 0 ID=Phyra71052;Parent=Phyra71052;rank=1 scaffold_1 . exon 990576 990920 . - . ID=Phyra71052.1;Parent=Phyra71052;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 986582 987031 . + . ID=Phyra72874;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000316;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 986582 987031 . + . ID=Phyra72874;Parent=Phyra72874;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 986582 986665 . + 0 ID=Phyra72874;Parent=Phyra72874;rank=1 scaffold_1 . exon 986582 986665 . + . ID=Phyra72874.1;Parent=Phyra72874;constitutive=1;rank=1 scaffold_1 . CDS 986729 986821 . + 0 ID=Phyra72874;Parent=Phyra72874;rank=2 scaffold_1 . exon 986729 986821 . + . ID=Phyra72874.2;Parent=Phyra72874;constitutive=1;rank=2 scaffold_1 . CDS 986888 987031 . + 0 ID=Phyra72874;Parent=Phyra72874;rank=3 scaffold_1 . exon 986888 987031 . + . ID=Phyra72874.3;Parent=Phyra72874;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 987642 989857 . + . ID=Phyra72875;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000317;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 987642 989857 . + . ID=Phyra72875;Parent=Phyra72875;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 987642 988505 . + 0 ID=Phyra72875;Parent=Phyra72875;rank=1 scaffold_1 . exon 987642 988505 . + . ID=Phyra72875.1;Parent=Phyra72875;constitutive=1;rank=1 scaffold_1 . CDS 988582 988680 . + 0 ID=Phyra72875;Parent=Phyra72875;rank=2 scaffold_1 . exon 988582 988680 . + . ID=Phyra72875.2;Parent=Phyra72875;constitutive=1;rank=2 scaffold_1 . CDS 988743 988839 . + 0 ID=Phyra72875;Parent=Phyra72875;rank=3 scaffold_1 . exon 988743 988839 . + . ID=Phyra72875.3;Parent=Phyra72875;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 988888 988919 . + 0 ID=Phyra72875;Parent=Phyra72875;rank=4 scaffold_1 . exon 988888 988919 . + . ID=Phyra72875.4;Parent=Phyra72875;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 989123 989239 . + 0 ID=Phyra72875;Parent=Phyra72875;rank=5 scaffold_1 . exon 989123 989239 . + . ID=Phyra72875.5;Parent=Phyra72875;constitutive=1;rank=5 scaffold_1 . CDS 989462 989857 . + 0 ID=Phyra72875;Parent=Phyra72875;rank=6 scaffold_1 . exon 989462 989857 . + . ID=Phyra72875.6;Parent=Phyra72875;constitutive=1;rank=6 scaffold_1 ensembl protein_coding_gene 991719 993428 . - . ID=Phyra72877;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000319;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 991719 993428 . - . ID=Phyra72877;Parent=Phyra72877;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 991719 993428 . - 0 ID=Phyra72877;Parent=Phyra72877;rank=1 scaffold_1 . exon 991719 993428 . - . ID=Phyra72877.1;Parent=Phyra72877;constitutive=1;rank=1 scaffold_1 . biological_region 999595 999599 0.999 - . logic_name=eponine scaffold_1 . biological_region 999719 999722 0.999 + . logic_name=eponine scaffold_1 . biological_region 1000600 1000603 0.999 + . logic_name=eponine scaffold_1 . biological_region 1002302 1002306 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1000804 1000953 . - . ID=Phyra38760;biotype=protein_coding;external_name=gwEuk.1.259.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1000804 1000953 . - . ID=Phyra38760;Parent=Phyra38760;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1000804 1000953 . - 0 ID=Phyra38760;Parent=Phyra38760;rank=1 scaffold_1 . exon 1000804 1000953 . - . ID=Phyra38760.1;Parent=Phyra38760;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1002203 1004937 . + . ID=Phyra72878;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000320;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1002203 1004937 . + . ID=Phyra72878;Parent=Phyra72878;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1002203 1002460 . + 0 ID=Phyra72878;Parent=Phyra72878;rank=1 scaffold_1 . exon 1002203 1002460 . + . ID=Phyra72878.1;Parent=Phyra72878;constitutive=1;rank=1 scaffold_1 . CDS 1002541 1004937 . + 0 ID=Phyra72878;Parent=Phyra72878;rank=2 scaffold_1 . exon 1002541 1004937 . + . ID=Phyra72878.2;Parent=Phyra72878;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 1014150 1016821 . - . ID=Phyra71053;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000033;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1014150 1016821 . - . ID=Phyra71053;Parent=Phyra71053;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1014150 1016481 . - 0 ID=Phyra71053;Parent=Phyra71053;rank=3 scaffold_1 . exon 1014150 1016481 . - . ID=Phyra71053.3;Parent=Phyra71053;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 1016548 1016618 . - 0 ID=Phyra71053;Parent=Phyra71053;rank=2 scaffold_1 . CDS 1016696 1016821 . - 0 ID=Phyra71053;Parent=Phyra71053;rank=1 scaffold_1 ensembl protein_coding_gene 1005308 1006332 . - . ID=Phyra72879;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000321;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1005308 1006332 . - . ID=Phyra72879;Parent=Phyra72879;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1005308 1005406 . - 0 ID=Phyra72879;Parent=Phyra72879;rank=4 scaffold_1 . exon 1005308 1005406 . - . ID=Phyra72879.4;Parent=Phyra72879;constitutive=1;rank=4 scaffold_1 . CDS 1005483 1006046 . - 0 ID=Phyra72879;Parent=Phyra72879;rank=3 scaffold_1 . exon 1005483 1006046 . - . ID=Phyra72879.3;Parent=Phyra72879;constitutive=1;rank=3 scaffold_1 . CDS 1006118 1006196 . - 0 ID=Phyra72879;Parent=Phyra72879;rank=2 scaffold_1 . exon 1006118 1006196 . - . ID=Phyra72879.2;Parent=Phyra72879;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1006325 1006332 . - 0 ID=Phyra72879;Parent=Phyra72879;rank=1 scaffold_1 . exon 1006325 1006332 . - . ID=Phyra72879.1;Parent=Phyra72879;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 1006467 1009181 . + . ID=Phyra72880;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000322;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1006467 1009181 . + . ID=Phyra72880;Parent=Phyra72880;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1006467 1006963 . + 0 ID=Phyra72880;Parent=Phyra72880;rank=1 scaffold_1 . exon 1006467 1006963 . + . ID=Phyra72880.1;Parent=Phyra72880;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1007023 1007647 . + 0 ID=Phyra72880;Parent=Phyra72880;rank=2 scaffold_1 . exon 1007023 1007647 . + . ID=Phyra72880.2;Parent=Phyra72880;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1007851 1007922 . + 0 ID=Phyra72880;Parent=Phyra72880;rank=3 scaffold_1 . exon 1007851 1007922 . + . ID=Phyra72880.3;Parent=Phyra72880;constitutive=1;rank=3 scaffold_1 . CDS 1007943 1009181 . + 0 ID=Phyra72880;Parent=Phyra72880;rank=4 scaffold_1 . exon 1007943 1009181 . + . ID=Phyra72880.4;Parent=Phyra72880;constitutive=1;rank=4 scaffold_1 ensembl protein_coding_gene 1009768 1013905 . + . ID=Phyra72881;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000323;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1009768 1013905 . + . ID=Phyra72881;Parent=Phyra72881;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1009768 1009802 . + 0 ID=Phyra72881;Parent=Phyra72881;rank=1 scaffold_1 . exon 1009768 1009802 . + . ID=Phyra72881.1;Parent=Phyra72881;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1009873 1013905 . + 0 ID=Phyra72881;Parent=Phyra72881;rank=2 scaffold_1 . exon 1009873 1013905 . + . ID=Phyra72881.2;Parent=Phyra72881;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . repeat_region 1021882 1022014 . ? . description=trf scaffold_1 . repeat_region 1022780 1022794 . ? . description=dust scaffold_1 . biological_region 1022914 1022917 0.999 + . logic_name=eponine scaffold_1 . biological_region 1023737 1023740 0.999 + . logic_name=eponine scaffold_1 . biological_region 1023793 1023795 0.999 - . logic_name=eponine scaffold_1 . repeat_region 1024398 1024406 . ? . description=dust scaffold_1 . exon 1016548 1016618 . - . ID=Phyra71053.2;Parent=Phyra71053;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . exon 1016696 1016821 . - . ID=Phyra71053.1;Parent=Phyra71053;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1017065 1018971 . - . ID=Phyra72883;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000325;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1017065 1018971 . - . ID=Phyra72883;Parent=Phyra72883;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1017065 1018534 . - 0 ID=Phyra72883;Parent=Phyra72883;rank=2 scaffold_1 . exon 1017065 1018534 . - . ID=Phyra72883.2;Parent=Phyra72883;constitutive=1;rank=2 scaffold_1 . CDS 1018606 1018971 . - 0 ID=Phyra72883;Parent=Phyra72883;rank=1 scaffold_1 . exon 1018606 1018971 . - . ID=Phyra72883.1;Parent=Phyra72883;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1023821 1026664 . + . ID=Phyra72884;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000326;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1023821 1026664 . + . ID=Phyra72884;Parent=Phyra72884;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1023821 1024371 . + 0 ID=Phyra72884;Parent=Phyra72884;rank=1 scaffold_1 . exon 1023821 1024371 . + . ID=Phyra72884.1;Parent=Phyra72884;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1024468 1024581 . + 0 ID=Phyra72884;Parent=Phyra72884;rank=2 scaffold_1 . exon 1024468 1024581 . + . ID=Phyra72884.2;Parent=Phyra72884;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 1024940 1025020 . + 0 ID=Phyra72884;Parent=Phyra72884;rank=3 scaffold_1 . exon 1024940 1025020 . + . ID=Phyra72884.3;Parent=Phyra72884;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1 . CDS 1025086 1025154 . + 0 ID=Phyra72884;Parent=Phyra72884;rank=4 scaffold_1 . exon 1025086 1025154 . + . ID=Phyra72884.4;Parent=Phyra72884;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_1 . CDS 1025227 1026664 . + 0 ID=Phyra72884;Parent=Phyra72884;rank=5 scaffold_1 . exon 1025227 1026664 . + . ID=Phyra72884.5;Parent=Phyra72884;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 ensembl protein_coding_gene 1026868 1027780 . - . ID=Phyra72885;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000327;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1026868 1027780 . - . ID=Phyra72885;Parent=Phyra72885;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1026868 1027057 . - 0 ID=Phyra72885;Parent=Phyra72885;rank=3 scaffold_1 . exon 1026868 1027057 . - . ID=Phyra72885.3;Parent=Phyra72885;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 1027138 1027271 . - 0 ID=Phyra72885;Parent=Phyra72885;rank=2 scaffold_1 . exon 1027138 1027271 . - . ID=Phyra72885.2;Parent=Phyra72885;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 1027409 1027780 . - 0 ID=Phyra72885;Parent=Phyra72885;rank=1 scaffold_1 . exon 1027409 1027780 . - . ID=Phyra72885.1;Parent=Phyra72885;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1034994 1036544 . + . ID=Phyra72886;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000328;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1034994 1036544 . + . ID=Phyra72886;Parent=Phyra72886;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1034994 1036544 . + 0 ID=Phyra72886;Parent=Phyra72886;rank=1 scaffold_1 . exon 1034994 1036544 . + . ID=Phyra72886.1;Parent=Phyra72886;constitutive=1;rank=1 scaffold_1 . repeat_region 1037329 1037378 . ? . description=dust scaffold_1 . repeat_region 1038645 1038694 . ? . description=dust scaffold_1 . repeat_region 1040334 1040383 . ? . description=dust scaffold_1 . repeat_region 1041454 1041503 . ? . description=dust scaffold_1 . repeat_region 1043687 1043736 . ? . description=dust scaffold_1 . biological_region 1048020 1048020 0.999 - . logic_name=eponine scaffold_1 . biological_region 1051391 1051392 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1049179 1049697 . - . ID=Phyra72887;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000329;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1049179 1049697 . - . ID=Phyra72887;Parent=Phyra72887;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1049179 1049190 . - 0 ID=Phyra72887;Parent=Phyra72887;rank=2 scaffold_1 . exon 1049179 1049190 . - . ID=Phyra72887.2;Parent=Phyra72887;constitutive=1;rank=2 scaffold_1 . CDS 1049305 1049697 . - 0 ID=Phyra72887;Parent=Phyra72887;rank=1 scaffold_1 . exon 1049305 1049697 . - . ID=Phyra72887.1;Parent=Phyra72887;constitutive=1;rank=1 scaffold_1 . repeat_region 1056729 1056788 . ? . description=dust scaffold_1 ensembl protein_coding_gene 1058538 1062026 . + . ID=Phyra72888;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000330;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1058538 1062026 . + . ID=Phyra72888;Parent=Phyra72888;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1058538 1062026 . + 0 ID=Phyra72888;Parent=Phyra72888;rank=1 scaffold_1 . exon 1058538 1062026 . + . ID=Phyra72888.1;Parent=Phyra72888;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1064533 1065630 . + . ID=Phyra72889;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000331;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1064533 1065630 . + . ID=Phyra72889;Parent=Phyra72889;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1064533 1065630 . + 0 ID=Phyra72889;Parent=Phyra72889;rank=1 scaffold_1 . exon 1064533 1065630 . + . ID=Phyra72889.1;Parent=Phyra72889;constitutive=1;rank=1 scaffold_1 . biological_region 1064984 1064984 0.999 - . logic_name=eponine scaffold_1 . biological_region 1070997 1070999 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1069264 1070655 . - . ID=Phyra71054;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000034;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1069264 1070655 . - . ID=Phyra71054;Parent=Phyra71054;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1069264 1070655 . - 0 ID=Phyra71054;Parent=Phyra71054;rank=1 scaffold_1 . exon 1069264 1070655 . - . ID=Phyra71054.1;Parent=Phyra71054;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1066667 1069073 . + . ID=Phyra72890;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000332;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1066667 1069073 . + . ID=Phyra72890;Parent=Phyra72890;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1066667 1067262 . + 0 ID=Phyra72890;Parent=Phyra72890;rank=1 scaffold_1 . exon 1066667 1067262 . + . ID=Phyra72890.1;Parent=Phyra72890;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1067333 1067407 . + 0 ID=Phyra72890;Parent=Phyra72890;rank=2 scaffold_1 . exon 1067333 1067407 . + . ID=Phyra72890.2;Parent=Phyra72890;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 1067470 1067541 . + 0 ID=Phyra72890;Parent=Phyra72890;rank=3 scaffold_1 . exon 1067470 1067541 . + . ID=Phyra72890.3;Parent=Phyra72890;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1 . CDS 1067612 1069073 . + 0 ID=Phyra72890;Parent=Phyra72890;rank=4 scaffold_1 . exon 1067612 1069073 . + . ID=Phyra72890.4;Parent=Phyra72890;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 ensembl protein_coding_gene 1070826 1071411 . - . ID=Phyra72892;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000334;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1070826 1071411 . - . ID=Phyra72892;Parent=Phyra72892;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1070826 1070886 . - 0 ID=Phyra72892;Parent=Phyra72892;rank=2 scaffold_1 . exon 1070826 1070886 . - . ID=Phyra72892.2;Parent=Phyra72892;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 1071007 1071411 . - 0 ID=Phyra72892;Parent=Phyra72892;rank=1 scaffold_1 . exon 1071007 1071411 . - . ID=Phyra72892.1;Parent=Phyra72892;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1072705 1074434 . - . ID=Phyra72893;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000335;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1072705 1074434 . - . ID=Phyra72893;Parent=Phyra72893;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1072705 1073493 . - 0 ID=Phyra72893;Parent=Phyra72893;rank=3 scaffold_1 . exon 1072705 1073493 . - . ID=Phyra72893.3;Parent=Phyra72893;constitutive=1;rank=3 scaffold_1 . CDS 1073564 1073812 . - 0 ID=Phyra72893;Parent=Phyra72893;rank=2 scaffold_1 . exon 1073564 1073812 . - . ID=Phyra72893.2;Parent=Phyra72893;constitutive=1;rank=2 scaffold_1 . CDS 1073880 1074434 . - 0 ID=Phyra72893;Parent=Phyra72893;rank=1 scaffold_1 . exon 1073880 1074434 . - . ID=Phyra72893.1;Parent=Phyra72893;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1074823 1075445 . - . ID=Phyra72894;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000336;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1074823 1075445 . - . ID=Phyra72894;Parent=Phyra72894;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1074823 1074864 . - 0 ID=Phyra72894;Parent=Phyra72894;rank=2 scaffold_1 . exon 1074823 1074864 . - . ID=Phyra72894.2;Parent=Phyra72894;constitutive=1;rank=2 scaffold_1 . CDS 1074936 1075445 . - 0 ID=Phyra72894;Parent=Phyra72894;rank=1 scaffold_1 ensembl protein_coding_gene 1071550 1072589 . + . ID=Phyra93374;biotype=protein_coding;external_name=C_scaffold_1000151;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1071550 1072589 . + . ID=Phyra93374;Parent=Phyra93374;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1071550 1071598 . + 0 ID=Phyra93374;Parent=Phyra93374;rank=1 scaffold_1 . exon 1071550 1071598 . + . ID=Phyra93374.1;Parent=Phyra93374;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1071639 1071745 . + 0 ID=Phyra93374;Parent=Phyra93374;rank=2 scaffold_1 . exon 1071639 1071745 . + . ID=Phyra93374.2;Parent=Phyra93374;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1071817 1071925 . + 0 ID=Phyra93374;Parent=Phyra93374;rank=3 scaffold_1 . exon 1071817 1071925 . + . ID=Phyra93374.3;Parent=Phyra93374;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 1071993 1072052 . + 0 ID=Phyra93374;Parent=Phyra93374;rank=4 scaffold_1 . exon 1071993 1072052 . + . ID=Phyra93374.4;Parent=Phyra93374;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 1072135 1072206 . + 0 ID=Phyra93374;Parent=Phyra93374;rank=5 scaffold_1 . exon 1072135 1072206 . + . ID=Phyra93374.5;Parent=Phyra93374;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 1072286 1072371 . + 0 ID=Phyra93374;Parent=Phyra93374;rank=6 scaffold_1 . exon 1072286 1072371 . + . ID=Phyra93374.6;Parent=Phyra93374;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 1072433 1072472 . + 0 ID=Phyra93374;Parent=Phyra93374;rank=7 scaffold_1 . exon 1072433 1072472 . + . ID=Phyra93374.7;Parent=Phyra93374;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_1 . CDS 1072549 1072589 . + 0 ID=Phyra93374;Parent=Phyra93374;rank=8 scaffold_1 . exon 1072549 1072589 . + . ID=Phyra93374.8;Parent=Phyra93374;constitutive=1;ensembl_phase=1;rank=8 scaffold_1 . repeat_region 1076596 1076633 . ? . description=dust scaffold_1 . repeat_region 1080397 1080406 . ? . description=dust scaffold_1 . repeat_region 1081932 1081941 . ? . description=dust scaffold_1 . repeat_region 1083583 1083600 . ? . description=dust scaffold_1 . repeat_region 1084585 1084618 . ? . description=trf scaffold_1 . exon 1074936 1075445 . - . ID=Phyra72894.1;Parent=Phyra72894;constitutive=1;rank=1 scaffold_1 . biological_region 1088486 1088491 0.999 + . logic_name=eponine scaffold_1 . biological_region 1088899 1088899 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1086086 1086262 . + . ID=Phyra38790;biotype=protein_coding;external_name=gwEuk.1.289.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1086086 1086262 . + . ID=Phyra38790;Parent=Phyra38790;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1086086 1086262 . + 0 ID=Phyra38790;Parent=Phyra38790;rank=1 scaffold_1 . exon 1086086 1086262 . + . ID=Phyra38790.1;Parent=Phyra38790;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1091734 1092612 . + . ID=Phyra72895;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000337;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1091734 1092612 . + . ID=Phyra72895;Parent=Phyra72895;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1091734 1091999 . + 0 ID=Phyra72895;Parent=Phyra72895;rank=1 scaffold_1 . exon 1091734 1091999 . + . ID=Phyra72895.1;Parent=Phyra72895;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1092110 1092503 . + 0 ID=Phyra72895;Parent=Phyra72895;rank=2 scaffold_1 . exon 1092110 1092503 . + . ID=Phyra72895.2;Parent=Phyra72895;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1092598 1092612 . + 0 ID=Phyra72895;Parent=Phyra72895;rank=3 scaffold_1 . exon 1092598 1092612 . + . ID=Phyra72895.3;Parent=Phyra72895;constitutive=1;rank=3 scaffold_1 . repeat_region 1102461 1102510 . ? . description=dust scaffold_1 . repeat_region 1104082 1104111 . ? . description=trf scaffold_1 ensembl protein_coding_gene 1101859 1106280 . - . ID=Phyra72896;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000338;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1101859 1106280 . - . ID=Phyra72896;Parent=Phyra72896;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1101859 1102430 . - 0 ID=Phyra72896;Parent=Phyra72896;rank=8 scaffold_1 . exon 1101859 1102430 . - . ID=Phyra72896.8;Parent=Phyra72896;constitutive=1;ensembl_phase=1;rank=8 scaffold_1 . CDS 1102525 1102715 . - 0 ID=Phyra72896;Parent=Phyra72896;rank=7 scaffold_1 . exon 1102525 1102715 . - . ID=Phyra72896.7;Parent=Phyra72896;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_1 . CDS 1102740 1102755 . - 0 ID=Phyra72896;Parent=Phyra72896;rank=6 scaffold_1 . exon 1102740 1102755 . - . ID=Phyra72896.6;Parent=Phyra72896;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_1 . CDS 1103100 1103688 . - 0 ID=Phyra72896;Parent=Phyra72896;rank=5 scaffold_1 . exon 1103100 1103688 . - . ID=Phyra72896.5;Parent=Phyra72896;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . CDS 1103715 1104317 . - 0 ID=Phyra72896;Parent=Phyra72896;rank=4 scaffold_1 . exon 1103715 1104317 . - . ID=Phyra72896.4;Parent=Phyra72896;constitutive=1;rank=4 scaffold_1 . CDS 1104337 1105016 . - 0 ID=Phyra72896;Parent=Phyra72896;rank=3 scaffold_1 . exon 1104337 1105016 . - . ID=Phyra72896.3;Parent=Phyra72896;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 1105212 1106175 . - 0 ID=Phyra72896;Parent=Phyra72896;rank=2 scaffold_1 . CDS 1106251 1106280 . - 0 ID=Phyra72896;Parent=Phyra72896;rank=1 scaffold_1 . biological_region 1105256 1105256 0.999 + . logic_name=eponine scaffold_1 . biological_region 1107285 1107288 0.999 + . logic_name=eponine scaffold_1 . biological_region 1112016 1112022 0.999 - . logic_name=eponine scaffold_1 . exon 1105212 1106175 . - . ID=Phyra72896.2;Parent=Phyra72896;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . exon 1106251 1106280 . - . ID=Phyra72896.1;Parent=Phyra72896;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1110337 1113288 . - . ID=Phyra72898;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000340;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1110337 1113288 . - . ID=Phyra72898;Parent=Phyra72898;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1110337 1112064 . - 0 ID=Phyra72898;Parent=Phyra72898;rank=3 scaffold_1 . exon 1110337 1112064 . - . ID=Phyra72898.3;Parent=Phyra72898;constitutive=1;rank=3 scaffold_1 . CDS 1112462 1113068 . - 0 ID=Phyra72898;Parent=Phyra72898;rank=2 scaffold_1 . exon 1112462 1113068 . - . ID=Phyra72898.2;Parent=Phyra72898;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1113131 1113288 . - 0 ID=Phyra72898;Parent=Phyra72898;rank=1 scaffold_1 . exon 1113131 1113288 . - . ID=Phyra72898.1;Parent=Phyra72898;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 1113570 1116679 . + . ID=Phyra72899;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000341;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1113570 1116679 . + . ID=Phyra72899;Parent=Phyra72899;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1113570 1113671 . + 0 ID=Phyra72899;Parent=Phyra72899;rank=1 scaffold_1 . exon 1113570 1113671 . + . ID=Phyra72899.1;Parent=Phyra72899;constitutive=1;rank=1 scaffold_1 . CDS 1113746 1113811 . + 0 ID=Phyra72899;Parent=Phyra72899;rank=2 scaffold_1 . exon 1113746 1113811 . + . ID=Phyra72899.2;Parent=Phyra72899;constitutive=1;rank=2 scaffold_1 . CDS 1113883 1114023 . + 0 ID=Phyra72899;Parent=Phyra72899;rank=3 scaffold_1 . exon 1113883 1114023 . + . ID=Phyra72899.3;Parent=Phyra72899;constitutive=1;rank=3 scaffold_1 . CDS 1114091 1114153 . + 0 ID=Phyra72899;Parent=Phyra72899;rank=4 scaffold_1 . exon 1114091 1114153 . + . ID=Phyra72899.4;Parent=Phyra72899;constitutive=1;rank=4 scaffold_1 . CDS 1114221 1114274 . + 0 ID=Phyra72899;Parent=Phyra72899;rank=5 scaffold_1 . exon 1114221 1114274 . + . ID=Phyra72899.5;Parent=Phyra72899;constitutive=1;rank=5 scaffold_1 . CDS 1114343 1114630 . + 0 ID=Phyra72899;Parent=Phyra72899;rank=6 scaffold_1 . exon 1114343 1114630 . + . ID=Phyra72899.6;Parent=Phyra72899;constitutive=1;rank=6 scaffold_1 . CDS 1114707 1114763 . + 0 ID=Phyra72899;Parent=Phyra72899;rank=7 scaffold_1 . exon 1114707 1114763 . + . ID=Phyra72899.7;Parent=Phyra72899;constitutive=1;rank=7 scaffold_1 . CDS 1114827 1114976 . + 0 ID=Phyra72899;Parent=Phyra72899;rank=8 scaffold_1 . CDS 1115051 1115131 . + 0 ID=Phyra72899;Parent=Phyra72899;rank=9 scaffold_1 . CDS 1115202 1115390 . + 0 ID=Phyra72899;Parent=Phyra72899;rank=10 scaffold_1 . CDS 1115467 1115534 . + 0 ID=Phyra72899;Parent=Phyra72899;rank=11 scaffold_1 . CDS 1115619 1115755 . + 0 ID=Phyra72899;Parent=Phyra72899;rank=12 scaffold_1 . CDS 1115830 1115988 . + 0 ID=Phyra72899;Parent=Phyra72899;rank=13 scaffold_1 . CDS 1116069 1116679 . + 0 ID=Phyra72899;Parent=Phyra72899;rank=14 scaffold_1 ensembl protein_coding_gene 1107133 1110104 . + . ID=Phyra93376;biotype=protein_coding;external_name=C_scaffold_1000153;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1107133 1110104 . + . ID=Phyra93376;Parent=Phyra93376;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1107133 1107158 . + 0 ID=Phyra93376;Parent=Phyra93376;rank=1 scaffold_1 . exon 1107133 1107158 . + . ID=Phyra93376.1;Parent=Phyra93376;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1107229 1107661 . + 0 ID=Phyra93376;Parent=Phyra93376;rank=2 scaffold_1 . exon 1107229 1107661 . + . ID=Phyra93376.2;Parent=Phyra93376;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1107689 1108079 . + 0 ID=Phyra93376;Parent=Phyra93376;rank=3 scaffold_1 . exon 1107689 1108079 . + . ID=Phyra93376.3;Parent=Phyra93376;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 1108122 1108324 . + 0 ID=Phyra93376;Parent=Phyra93376;rank=4 scaffold_1 . exon 1108122 1108324 . + . ID=Phyra93376.4;Parent=Phyra93376;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 1108398 1108486 . + 0 ID=Phyra93376;Parent=Phyra93376;rank=5 scaffold_1 . exon 1108398 1108486 . + . ID=Phyra93376.5;Parent=Phyra93376;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_1 . CDS 1108554 1108861 . + 0 ID=Phyra93376;Parent=Phyra93376;rank=6 scaffold_1 . exon 1108554 1108861 . + . ID=Phyra93376.6;Parent=Phyra93376;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_1 . CDS 1108895 1109045 . + 0 ID=Phyra93376;Parent=Phyra93376;rank=7 scaffold_1 . exon 1108895 1109045 . + . ID=Phyra93376.7;Parent=Phyra93376;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_1 . CDS 1109171 1109249 . + 0 ID=Phyra93376;Parent=Phyra93376;rank=8 scaffold_1 . exon 1109171 1109249 . + . ID=Phyra93376.8;Parent=Phyra93376;constitutive=1;ensembl_phase=2;rank=8 scaffold_1 . CDS 1109323 1109514 . + 0 ID=Phyra93376;Parent=Phyra93376;rank=9 scaffold_1 . exon 1109323 1109514 . + . ID=Phyra93376.9;Parent=Phyra93376;constitutive=1;rank=9 scaffold_1 . CDS 1109601 1109657 . + 0 ID=Phyra93376;Parent=Phyra93376;rank=10 scaffold_1 . exon 1109601 1109657 . + . ID=Phyra93376.10;Parent=Phyra93376;constitutive=1;rank=10 scaffold_1 . CDS 1109889 1109974 . + 0 ID=Phyra93376;Parent=Phyra93376;rank=11 scaffold_1 . exon 1109889 1109974 . + . ID=Phyra93376.11;Parent=Phyra93376;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_1 . CDS 1110044 1110104 . + 0 ID=Phyra93376;Parent=Phyra93376;rank=12 scaffold_1 . exon 1110044 1110104 . + . ID=Phyra93376.12;Parent=Phyra93376;constitutive=1;ensembl_phase=2;rank=12 scaffold_1 . repeat_region 1118596 1118791 . ? . description=dust scaffold_1 . exon 1114827 1114976 . + . ID=Phyra72899.8;Parent=Phyra72899;constitutive=1;rank=8 scaffold_1 . exon 1115051 1115131 . + . ID=Phyra72899.9;Parent=Phyra72899;constitutive=1;rank=9 scaffold_1 . exon 1115202 1115390 . + . ID=Phyra72899.10;Parent=Phyra72899;constitutive=1;rank=10 scaffold_1 . exon 1115467 1115534 . + . ID=Phyra72899.11;Parent=Phyra72899;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_1 . exon 1115619 1115755 . + . ID=Phyra72899.12;Parent=Phyra72899;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_1 . exon 1115830 1115988 . + . ID=Phyra72899.13;Parent=Phyra72899;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_1 . exon 1116069 1116679 . + . ID=Phyra72899.14;Parent=Phyra72899;constitutive=1;ensembl_phase=1;rank=14 scaffold_1 ensembl protein_coding_gene 1122734 1123976 . - . ID=Phyra72902;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000344;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1122734 1123976 . - . ID=Phyra72902;Parent=Phyra72902;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1122734 1123503 . - 0 ID=Phyra72902;Parent=Phyra72902;rank=3 scaffold_1 . exon 1122734 1123503 . - . ID=Phyra72902.3;Parent=Phyra72902;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 1123560 1123674 . - 0 ID=Phyra72902;Parent=Phyra72902;rank=2 scaffold_1 . exon 1123560 1123674 . - . ID=Phyra72902.2;Parent=Phyra72902;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 1123740 1123976 . - 0 ID=Phyra72902;Parent=Phyra72902;rank=1 scaffold_1 . exon 1123740 1123976 . - . ID=Phyra72902.1;Parent=Phyra72902;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1116880 1117194 . - . ID=Phyra93379;biotype=protein_coding;external_name=C_scaffold_1000156;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1116880 1117194 . - . ID=Phyra93379;Parent=Phyra93379;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1116880 1116957 . - 0 ID=Phyra93379;Parent=Phyra93379;rank=3 scaffold_1 . exon 1116880 1116957 . - . ID=Phyra93379.3;Parent=Phyra93379;constitutive=1;rank=3 scaffold_1 . CDS 1117038 1117085 . - 0 ID=Phyra93379;Parent=Phyra93379;rank=2 scaffold_1 . exon 1117038 1117085 . - . ID=Phyra93379.2;Parent=Phyra93379;constitutive=1;rank=2 scaffold_1 . CDS 1117153 1117194 . - 0 ID=Phyra93379;Parent=Phyra93379;rank=1 scaffold_1 . exon 1117153 1117194 . - . ID=Phyra93379.1;Parent=Phyra93379;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1117368 1118000 . + . ID=Phyra93380;biotype=protein_coding;external_name=C_scaffold_1000157;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1117368 1118000 . + . ID=Phyra93380;Parent=Phyra93380;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1117368 1118000 . + 0 ID=Phyra93380;Parent=Phyra93380;rank=1 scaffold_1 . exon 1117368 1118000 . + . ID=Phyra93380.1;Parent=Phyra93380;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1118360 1122564 . + . ID=Phyra93381;biotype=protein_coding;external_name=C_scaffold_1000158;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1118360 1122564 . + . ID=Phyra93381;Parent=Phyra93381;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1118360 1118560 . + 0 ID=Phyra93381;Parent=Phyra93381;rank=1 scaffold_1 . exon 1118360 1118560 . + . ID=Phyra93381.1;Parent=Phyra93381;constitutive=1;rank=1 scaffold_1 . CDS 1119346 1120059 . + 0 ID=Phyra93381;Parent=Phyra93381;rank=2 scaffold_1 . exon 1119346 1120059 . + . ID=Phyra93381.2;Parent=Phyra93381;constitutive=1;rank=2 scaffold_1 . CDS 1120306 1120405 . + 0 ID=Phyra93381;Parent=Phyra93381;rank=3 scaffold_1 . exon 1120306 1120405 . + . ID=Phyra93381.3;Parent=Phyra93381;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 1120481 1121251 . + 0 ID=Phyra93381;Parent=Phyra93381;rank=4 scaffold_1 . exon 1120481 1121251 . + . ID=Phyra93381.4;Parent=Phyra93381;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 1121408 1121485 . + 0 ID=Phyra93381;Parent=Phyra93381;rank=5 scaffold_1 . exon 1121408 1121485 . + . ID=Phyra93381.5;Parent=Phyra93381;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 1121708 1121833 . + 0 ID=Phyra93381;Parent=Phyra93381;rank=6 scaffold_1 . exon 1121708 1121833 . + . ID=Phyra93381.6;Parent=Phyra93381;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 1121885 1121951 . + 0 ID=Phyra93381;Parent=Phyra93381;rank=7 scaffold_1 . exon 1121885 1121951 . + . ID=Phyra93381.7;Parent=Phyra93381;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_1 . CDS 1122402 1122564 . + 0 ID=Phyra93381;Parent=Phyra93381;rank=8 scaffold_1 . exon 1122402 1122564 . + . ID=Phyra93381.8;Parent=Phyra93381;constitutive=1;ensembl_phase=2;rank=8 scaffold_1 . biological_region 1127169 1127173 0.999 + . logic_name=eponine scaffold_1 . repeat_region 1127337 1127356 . ? . description=trf scaffold_1 . biological_region 1128126 1128132 0.999 - . logic_name=eponine scaffold_1 . biological_region 1128608 1128609 0.999 + . logic_name=eponine scaffold_1 . biological_region 1128647 1128651 0.999 - . logic_name=eponine scaffold_1 . biological_region 1128691 1128693 0.999 - . logic_name=eponine scaffold_1 . biological_region 1128730 1128732 0.999 - . logic_name=eponine scaffold_1 ensembl tRNA_gene 1124814 1124886 . + . ID=EPrPRAG00000000179;biotype=tRNA;description=tRNA-Lys for anticodon UUU [Source:TRNASCAN_SE%3BAcc:tRNA-Lys];external_name=tRNA-Lys;logic_name=ncrna_eg scaffold_1 ensembl transcript 1124814 1124886 . + . ID=EPrPRAT00000000179;Parent=EPrPRAG00000000179;biotype=tRNA;logic_name=ncrna_eg scaffold_1 . exon 1124814 1124886 . + . ID=EPrPRAE00000000179;Parent=EPrPRAT00000000179;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 1134554 1135639 . - . ID=Phyra38799;biotype=protein_coding;external_name=gwEuk.1.298.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1134554 1135639 . - . ID=Phyra38799;Parent=Phyra38799;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1134554 1135639 . - 0 ID=Phyra38799;Parent=Phyra38799;rank=1 scaffold_1 . exon 1134554 1135639 . - . ID=Phyra38799.1;Parent=Phyra38799;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1125249 1127260 . - . ID=Phyra72903;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000345;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1125249 1127260 . - . ID=Phyra72903;Parent=Phyra72903;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1125249 1126847 . - 0 ID=Phyra72903;Parent=Phyra72903;rank=2 scaffold_1 . exon 1125249 1126847 . - . ID=Phyra72903.2;Parent=Phyra72903;constitutive=1;rank=2 scaffold_1 . CDS 1126928 1127260 . - 0 ID=Phyra72903;Parent=Phyra72903;rank=1 scaffold_1 . exon 1126928 1127260 . - . ID=Phyra72903.1;Parent=Phyra72903;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1128590 1129264 . + . ID=Phyra72904;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000346;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1128590 1129264 . + . ID=Phyra72904;Parent=Phyra72904;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1128590 1129264 . + 0 ID=Phyra72904;Parent=Phyra72904;rank=1 scaffold_1 . exon 1128590 1129264 . + . ID=Phyra72904.1;Parent=Phyra72904;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1133972 1134388 . + . ID=Phyra93385;biotype=protein_coding;external_name=C_scaffold_1000162;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1133972 1134388 . + . ID=Phyra93385;Parent=Phyra93385;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1133972 1134319 . + 0 ID=Phyra93385;Parent=Phyra93385;rank=1 scaffold_1 . exon 1133972 1134319 . + . ID=Phyra93385.1;Parent=Phyra93385;constitutive=1;rank=1 scaffold_1 . CDS 1134383 1134388 . + 0 ID=Phyra93385;Parent=Phyra93385;rank=2 scaffold_1 . exon 1134383 1134388 . + . ID=Phyra93385.2;Parent=Phyra93385;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 1135819 1139889 . + . ID=Phyra72906;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000348;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1135819 1139889 . + . ID=Phyra72906;Parent=Phyra72906;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1135819 1139889 . + 0 ID=Phyra72906;Parent=Phyra72906;rank=1 scaffold_1 . exon 1135819 1139889 . + . ID=Phyra72906.1;Parent=Phyra72906;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1140030 1143940 . - . ID=Phyra72907;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000349;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1140030 1143940 . - . ID=Phyra72907;Parent=Phyra72907;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1140030 1141103 . - 0 ID=Phyra72907;Parent=Phyra72907;rank=5 scaffold_1 . exon 1140030 1141103 . - . ID=Phyra72907.5;Parent=Phyra72907;constitutive=1;rank=5 scaffold_1 . CDS 1141362 1141793 . - 0 ID=Phyra72907;Parent=Phyra72907;rank=4 scaffold_1 . exon 1141362 1141793 . - . ID=Phyra72907.4;Parent=Phyra72907;constitutive=1;rank=4 scaffold_1 . CDS 1142260 1142493 . - 0 ID=Phyra72907;Parent=Phyra72907;rank=3 scaffold_1 . exon 1142260 1142493 . - . ID=Phyra72907.3;Parent=Phyra72907;constitutive=1;rank=3 scaffold_1 . CDS 1142766 1142950 . - 0 ID=Phyra72907;Parent=Phyra72907;rank=2 scaffold_1 . exon 1142766 1142950 . - . ID=Phyra72907.2;Parent=Phyra72907;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1143223 1143940 . - 0 ID=Phyra72907;Parent=Phyra72907;rank=1 scaffold_1 . exon 1143223 1143940 . - . ID=Phyra72907.1;Parent=Phyra72907;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 1144246 1147987 . - . ID=Phyra72908;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000350;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1144246 1147987 . - . ID=Phyra72908;Parent=Phyra72908;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1144246 1144477 . - 0 ID=Phyra72908;Parent=Phyra72908;rank=8 scaffold_1 . exon 1144246 1144477 . - . ID=Phyra72908.8;Parent=Phyra72908;constitutive=1;ensembl_phase=2;rank=8 scaffold_1 . CDS 1144543 1144855 . - 0 ID=Phyra72908;Parent=Phyra72908;rank=7 scaffold_1 . exon 1144543 1144855 . - . ID=Phyra72908.7;Parent=Phyra72908;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_1 . CDS 1144932 1145345 . - 0 ID=Phyra72908;Parent=Phyra72908;rank=6 scaffold_1 . CDS 1145726 1147110 . - 0 ID=Phyra72908;Parent=Phyra72908;rank=5 scaffold_1 . CDS 1147184 1147381 . - 0 ID=Phyra72908;Parent=Phyra72908;rank=4 scaffold_1 . CDS 1147473 1147600 . - 0 ID=Phyra72908;Parent=Phyra72908;rank=3 scaffold_1 . CDS 1147674 1147874 . - 0 ID=Phyra72908;Parent=Phyra72908;rank=2 scaffold_1 . CDS 1147952 1147987 . - 0 ID=Phyra72908;Parent=Phyra72908;rank=1 scaffold_1 . biological_region 1144776 1144778 0.999 + . logic_name=eponine scaffold_1 . repeat_region 1149312 1149373 . ? . description=trf scaffold_1 . biological_region 1149445 1149446 0.999 + . logic_name=eponine scaffold_1 . biological_region 1152460 1152460 0.999 + . logic_name=eponine scaffold_1 . biological_region 1153448 1153453 0.999 + . logic_name=eponine scaffold_1 . biological_region 1153504 1153510 0.999 + . logic_name=eponine scaffold_1 . biological_region 1153796 1153796 0.999 + . logic_name=eponine scaffold_1 . exon 1144932 1145345 . - . ID=Phyra72908.6;Parent=Phyra72908;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_1 . exon 1145726 1147110 . - . ID=Phyra72908.5;Parent=Phyra72908;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_1 . exon 1147184 1147381 . - . ID=Phyra72908.4;Parent=Phyra72908;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_1 . exon 1147473 1147600 . - . ID=Phyra72908.3;Parent=Phyra72908;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . exon 1147674 1147874 . - . ID=Phyra72908.2;Parent=Phyra72908;constitutive=1;rank=2 scaffold_1 . exon 1147952 1147987 . - . ID=Phyra72908.1;Parent=Phyra72908;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1149421 1152796 . + . ID=Phyra72910;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000352;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1149421 1152796 . + . ID=Phyra72910;Parent=Phyra72910;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1149421 1151415 . + 0 ID=Phyra72910;Parent=Phyra72910;rank=1 scaffold_1 . exon 1149421 1151415 . + . ID=Phyra72910.1;Parent=Phyra72910;constitutive=1;rank=1 scaffold_1 . CDS 1151504 1152796 . + 0 ID=Phyra72910;Parent=Phyra72910;rank=2 scaffold_1 . exon 1151504 1152796 . + . ID=Phyra72910.2;Parent=Phyra72910;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 1152909 1154030 . - . ID=Phyra72911;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000353;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1152909 1154030 . - . ID=Phyra72911;Parent=Phyra72911;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1152909 1154030 . - 0 ID=Phyra72911;Parent=Phyra72911;rank=1 scaffold_1 . exon 1152909 1154030 . - . ID=Phyra72911.1;Parent=Phyra72911;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1148185 1149263 . + . ID=Phyra93389;biotype=protein_coding;external_name=C_scaffold_1000166;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1148185 1149263 . + . ID=Phyra93389;Parent=Phyra93389;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1148185 1148284 . + 0 ID=Phyra93389;Parent=Phyra93389;rank=1 scaffold_1 . exon 1148185 1148284 . + . ID=Phyra93389.1;Parent=Phyra93389;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1148363 1148424 . + 0 ID=Phyra93389;Parent=Phyra93389;rank=2 scaffold_1 . exon 1148363 1148424 . + . ID=Phyra93389.2;Parent=Phyra93389;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1148490 1148555 . + 0 ID=Phyra93389;Parent=Phyra93389;rank=3 scaffold_1 . exon 1148490 1148555 . + . ID=Phyra93389.3;Parent=Phyra93389;constitutive=1;rank=3 scaffold_1 . CDS 1148635 1148736 . + 0 ID=Phyra93389;Parent=Phyra93389;rank=4 scaffold_1 . exon 1148635 1148736 . + . ID=Phyra93389.4;Parent=Phyra93389;constitutive=1;rank=4 scaffold_1 . CDS 1148798 1148844 . + 0 ID=Phyra93389;Parent=Phyra93389;rank=5 scaffold_1 . exon 1148798 1148844 . + . ID=Phyra93389.5;Parent=Phyra93389;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_1 . CDS 1148906 1149023 . + 0 ID=Phyra93389;Parent=Phyra93389;rank=6 scaffold_1 . exon 1148906 1149023 . + . ID=Phyra93389.6;Parent=Phyra93389;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 . CDS 1149096 1149263 . + 0 ID=Phyra93389;Parent=Phyra93389;rank=7 scaffold_1 . exon 1149096 1149263 . + . ID=Phyra93389.7;Parent=Phyra93389;constitutive=1;rank=7 scaffold_1 ensembl protein_coding_gene 1157692 1158279 . + . ID=Phyra72912;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000354;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1157692 1158279 . + . ID=Phyra72912;Parent=Phyra72912;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1157692 1158279 . + 0 ID=Phyra72912;Parent=Phyra72912;rank=1 scaffold_1 . exon 1157692 1158279 . + . ID=Phyra72912.1;Parent=Phyra72912;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1159058 1160266 . + . ID=Phyra72913;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000355;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1159058 1160266 . + . ID=Phyra72913;Parent=Phyra72913;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1159058 1159864 . + 0 ID=Phyra72913;Parent=Phyra72913;rank=1 scaffold_1 . exon 1159058 1159864 . + . ID=Phyra72913.1;Parent=Phyra72913;constitutive=1;rank=1 scaffold_1 . CDS 1160216 1160266 . + 0 ID=Phyra72913;Parent=Phyra72913;rank=2 scaffold_1 . exon 1160216 1160266 . + . ID=Phyra72913.2;Parent=Phyra72913;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 1161816 1166985 . + . ID=Phyra72914;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000356;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1161816 1166985 . + . ID=Phyra72914;Parent=Phyra72914;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1161816 1164175 . + 0 ID=Phyra72914;Parent=Phyra72914;rank=1 scaffold_1 . exon 1161816 1164175 . + . ID=Phyra72914.1;Parent=Phyra72914;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1164678 1165640 . + 0 ID=Phyra72914;Parent=Phyra72914;rank=2 scaffold_1 . CDS 1166058 1166985 . + 0 ID=Phyra72914;Parent=Phyra72914;rank=3 scaffold_1 . repeat_region 1165723 1165733 . ? . description=dust scaffold_1 . repeat_region 1170632 1170648 . ? . description=dust scaffold_1 . repeat_region 1171288 1171560 . ? . description=trf scaffold_1 . repeat_region 1171919 1171938 . ? . description=trf scaffold_1 . biological_region 1174366 1174368 0.999 + . logic_name=eponine scaffold_1 . exon 1164678 1165640 . + . ID=Phyra72914.2;Parent=Phyra72914;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . exon 1166058 1166985 . + . ID=Phyra72914.3;Parent=Phyra72914;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 ensembl protein_coding_gene 1169348 1177169 . - . ID=Phyra93393;biotype=protein_coding;external_name=C_scaffold_1000170;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1169348 1177169 . - . ID=Phyra93393;Parent=Phyra93393;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1169348 1169369 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=23 scaffold_1 . exon 1169348 1169369 . - . ID=Phyra93393.23;Parent=Phyra93393;constitutive=1;ensembl_phase=2;rank=23 scaffold_1 . CDS 1169417 1169526 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=22 scaffold_1 . exon 1169417 1169526 . - . ID=Phyra93393.22;Parent=Phyra93393;constitutive=1;ensembl_end_phase=2;rank=22 scaffold_1 . CDS 1169597 1170048 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=21 scaffold_1 . exon 1169597 1170048 . - . ID=Phyra93393.21;Parent=Phyra93393;constitutive=1;ensembl_phase=1;rank=21 scaffold_1 . CDS 1170121 1170379 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=20 scaffold_1 . exon 1170121 1170379 . - . ID=Phyra93393.20;Parent=Phyra93393;constitutive=1;ensembl_end_phase=1;rank=20 scaffold_1 . CDS 1170491 1170593 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=19 scaffold_1 . exon 1170491 1170593 . - . ID=Phyra93393.19;Parent=Phyra93393;constitutive=1;ensembl_phase=2;rank=19 scaffold_1 . CDS 1170703 1172398 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=18 scaffold_1 . exon 1170703 1172398 . - . ID=Phyra93393.18;Parent=Phyra93393;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=18 scaffold_1 . CDS 1172468 1172753 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=17 scaffold_1 . exon 1172468 1172753 . - . ID=Phyra93393.17;Parent=Phyra93393;constitutive=1;ensembl_end_phase=1;rank=17 scaffold_1 . CDS 1172853 1173310 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=16 scaffold_1 . exon 1172853 1173310 . - . ID=Phyra93393.16;Parent=Phyra93393;constitutive=1;ensembl_phase=1;rank=16 scaffold_1 . CDS 1173428 1173710 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=15 scaffold_1 . exon 1173428 1173710 . - . ID=Phyra93393.15;Parent=Phyra93393;constitutive=1;ensembl_end_phase=1;rank=15 scaffold_1 . CDS 1173781 1173942 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=14 scaffold_1 . exon 1173781 1173942 . - . ID=Phyra93393.14;Parent=Phyra93393;constitutive=1;rank=14 scaffold_1 . CDS 1174054 1174215 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=13 scaffold_1 . exon 1174054 1174215 . - . ID=Phyra93393.13;Parent=Phyra93393;constitutive=1;rank=13 scaffold_1 . CDS 1174301 1174586 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=12 scaffold_1 . exon 1174301 1174586 . - . ID=Phyra93393.12;Parent=Phyra93393;constitutive=1;ensembl_phase=2;rank=12 scaffold_1 . CDS 1174770 1174863 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=11 scaffold_1 . CDS 1174929 1175331 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=10 scaffold_1 . CDS 1175405 1175496 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=9 scaffold_1 . CDS 1175577 1175614 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=8 scaffold_1 . CDS 1175692 1175792 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=7 scaffold_1 . CDS 1175857 1176041 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=6 scaffold_1 . CDS 1176136 1176308 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=5 scaffold_1 . CDS 1176383 1176426 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=4 scaffold_1 . CDS 1176487 1176696 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=3 scaffold_1 . CDS 1176804 1176862 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=2 scaffold_1 . CDS 1176944 1177169 . - 0 ID=Phyra93393;Parent=Phyra93393;rank=1 scaffold_1 ensembl protein_coding_gene 1179421 1180114 . - . ID=Phyra72917;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000359;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1179421 1180114 . - . ID=Phyra72917;Parent=Phyra72917;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1179421 1179433 . - 0 ID=Phyra72917;Parent=Phyra72917;rank=3 scaffold_1 . exon 1179421 1179433 . - . ID=Phyra72917.3;Parent=Phyra72917;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 1179454 1179850 . - 0 ID=Phyra72917;Parent=Phyra72917;rank=2 scaffold_1 . exon 1179454 1179850 . - . ID=Phyra72917.2;Parent=Phyra72917;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 1179946 1180114 . - 0 ID=Phyra72917;Parent=Phyra72917;rank=1 scaffold_1 . exon 1179946 1180114 . - . ID=Phyra72917.1;Parent=Phyra72917;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 1180434 1181546 . + . ID=Phyra72918;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000360;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1180434 1181546 . + . ID=Phyra72918;Parent=Phyra72918;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1180434 1180447 . + 0 ID=Phyra72918;Parent=Phyra72918;rank=1 scaffold_1 . exon 1180434 1180447 . + . ID=Phyra72918.1;Parent=Phyra72918;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1180523 1180595 . + 0 ID=Phyra72918;Parent=Phyra72918;rank=2 scaffold_1 . exon 1180523 1180595 . + . ID=Phyra72918.2;Parent=Phyra72918;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1180629 1180727 . + 0 ID=Phyra72918;Parent=Phyra72918;rank=3 scaffold_1 . exon 1180629 1180727 . + . ID=Phyra72918.3;Parent=Phyra72918;constitutive=1;rank=3 scaffold_1 . CDS 1180819 1180866 . + 0 ID=Phyra72918;Parent=Phyra72918;rank=4 scaffold_1 . exon 1180819 1180866 . + . ID=Phyra72918.4;Parent=Phyra72918;constitutive=1;rank=4 scaffold_1 . CDS 1180944 1181039 . + 0 ID=Phyra72918;Parent=Phyra72918;rank=5 scaffold_1 . exon 1180944 1181039 . + . ID=Phyra72918.5;Parent=Phyra72918;constitutive=1;rank=5 scaffold_1 . CDS 1181123 1181401 . + 0 ID=Phyra72918;Parent=Phyra72918;rank=6 scaffold_1 . exon 1181123 1181401 . + . ID=Phyra72918.6;Parent=Phyra72918;constitutive=1;rank=6 scaffold_1 . CDS 1181493 1181546 . + 0 ID=Phyra72918;Parent=Phyra72918;rank=7 scaffold_1 . exon 1181493 1181546 . + . ID=Phyra72918.7;Parent=Phyra72918;constitutive=1;rank=7 scaffold_1 ensembl protein_coding_gene 1181842 1182890 . - . ID=Phyra72919;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000361;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1181842 1182890 . - . ID=Phyra72919;Parent=Phyra72919;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1181842 1182341 . - 0 ID=Phyra72919;Parent=Phyra72919;rank=2 scaffold_1 . exon 1181842 1182341 . - . ID=Phyra72919.2;Parent=Phyra72919;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1182416 1182890 . - 0 ID=Phyra72919;Parent=Phyra72919;rank=1 scaffold_1 . exon 1182416 1182890 . - . ID=Phyra72919.1;Parent=Phyra72919;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . exon 1174770 1174863 . - . ID=Phyra93393.11;Parent=Phyra93393;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_1 . exon 1174929 1175331 . - . ID=Phyra93393.10;Parent=Phyra93393;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_1 . exon 1175405 1175496 . - . ID=Phyra93393.9;Parent=Phyra93393;constitutive=1;ensembl_phase=1;rank=9 scaffold_1 . exon 1175577 1175614 . - . ID=Phyra93393.8;Parent=Phyra93393;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_1 . exon 1175692 1175792 . - . ID=Phyra93393.7;Parent=Phyra93393;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_1 . exon 1175857 1176041 . - . ID=Phyra93393.6;Parent=Phyra93393;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . exon 1176136 1176308 . - . ID=Phyra93393.5;Parent=Phyra93393;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_1 . exon 1176383 1176426 . - . ID=Phyra93393.4;Parent=Phyra93393;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . exon 1176487 1176696 . - . ID=Phyra93393.3;Parent=Phyra93393;constitutive=1;rank=3 scaffold_1 . exon 1176804 1176862 . - . ID=Phyra93393.2;Parent=Phyra93393;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . exon 1176944 1177169 . - . ID=Phyra93393.1;Parent=Phyra93393;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 1177508 1178231 . - . ID=Phyra93394;biotype=protein_coding;external_name=C_scaffold_1000171;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1177508 1178231 . - . ID=Phyra93394;Parent=Phyra93394;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1177508 1177811 . - 0 ID=Phyra93394;Parent=Phyra93394;rank=3 scaffold_1 . exon 1177508 1177811 . - . ID=Phyra93394.3;Parent=Phyra93394;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 1177896 1177990 . - 0 ID=Phyra93394;Parent=Phyra93394;rank=2 scaffold_1 . exon 1177896 1177990 . - . ID=Phyra93394.2;Parent=Phyra93394;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 1178064 1178231 . - 0 ID=Phyra93394;Parent=Phyra93394;rank=1 scaffold_1 . exon 1178064 1178231 . - . ID=Phyra93394.1;Parent=Phyra93394;constitutive=1;rank=1 scaffold_1 . repeat_region 1185087 1185136 . ? . description=trf scaffold_1 . biological_region 1185421 1185425 0.999 + . logic_name=eponine scaffold_1 . repeat_region 1185964 1185972 . ? . description=dust scaffold_1 . biological_region 1188932 1188935 0.999 - . logic_name=eponine scaffold_1 . biological_region 1189334 1189337 0.999 + . logic_name=eponine scaffold_1 . repeat_region 1190774 1190785 . ? . description=dust scaffold_1 . biological_region 1190853 1190858 0.999 + . logic_name=eponine scaffold_1 . repeat_region 1191484 1191508 . ? . description=dust scaffold_1 ensembl protein_coding_gene 1185977 1188254 . + . ID=Phyra72920;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000362;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1185977 1188254 . + . ID=Phyra72920;Parent=Phyra72920;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1185977 1188104 . + 0 ID=Phyra72920;Parent=Phyra72920;rank=1 scaffold_1 . exon 1185977 1188104 . + . ID=Phyra72920.1;Parent=Phyra72920;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1188223 1188254 . + 0 ID=Phyra72920;Parent=Phyra72920;rank=2 scaffold_1 . exon 1188223 1188254 . + . ID=Phyra72920.2;Parent=Phyra72920;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 1188821 1189420 . - . ID=Phyra72921;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000363;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1188821 1189420 . - . ID=Phyra72921;Parent=Phyra72921;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1188821 1189420 . - 0 ID=Phyra72921;Parent=Phyra72921;rank=1 scaffold_1 . exon 1188821 1189420 . - . ID=Phyra72921.1;Parent=Phyra72921;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1190365 1190971 . - . ID=Phyra72922;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000364;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1190365 1190971 . - . ID=Phyra72922;Parent=Phyra72922;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1190365 1190761 . - 0 ID=Phyra72922;Parent=Phyra72922;rank=2 scaffold_1 . exon 1190365 1190761 . - . ID=Phyra72922.2;Parent=Phyra72922;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1190844 1190971 . - 0 ID=Phyra72922;Parent=Phyra72922;rank=1 scaffold_1 . exon 1190844 1190971 . - . ID=Phyra72922.1;Parent=Phyra72922;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 1191069 1192996 . + . ID=Phyra72923;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000365;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1191069 1192996 . + . ID=Phyra72923;Parent=Phyra72923;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1191069 1191225 . + 0 ID=Phyra72923;Parent=Phyra72923;rank=1 scaffold_1 . exon 1191069 1191225 . + . ID=Phyra72923.1;Parent=Phyra72923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1191288 1191441 . + 0 ID=Phyra72923;Parent=Phyra72923;rank=2 scaffold_1 . exon 1191288 1191441 . + . ID=Phyra72923.2;Parent=Phyra72923;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 1191511 1191920 . + 0 ID=Phyra72923;Parent=Phyra72923;rank=3 scaffold_1 . exon 1191511 1191920 . + . ID=Phyra72923.3;Parent=Phyra72923;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 1191981 1192014 . + 0 ID=Phyra72923;Parent=Phyra72923;rank=4 scaffold_1 . exon 1191981 1192014 . + . ID=Phyra72923.4;Parent=Phyra72923;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_1 . CDS 1192091 1192142 . + 0 ID=Phyra72923;Parent=Phyra72923;rank=5 scaffold_1 . exon 1192091 1192142 . + . ID=Phyra72923.5;Parent=Phyra72923;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 1192216 1192356 . + 0 ID=Phyra72923;Parent=Phyra72923;rank=6 scaffold_1 . exon 1192216 1192356 . + . ID=Phyra72923.6;Parent=Phyra72923;constitutive=1;rank=6 scaffold_1 . CDS 1192454 1192996 . + 0 ID=Phyra72923;Parent=Phyra72923;rank=7 scaffold_1 . exon 1192454 1192996 . + . ID=Phyra72923.7;Parent=Phyra72923;constitutive=1;rank=7 scaffold_1 ensembl protein_coding_gene 1199710 1201379 . - . ID=Phyra72924;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000366;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1199710 1201379 . - . ID=Phyra72924;Parent=Phyra72924;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1199710 1201289 . - 0 ID=Phyra72924;Parent=Phyra72924;rank=2 scaffold_1 . exon 1199710 1201289 . - . ID=Phyra72924.2;Parent=Phyra72924;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1201367 1201379 . - 0 ID=Phyra72924;Parent=Phyra72924;rank=1 scaffold_1 . exon 1201367 1201379 . - . ID=Phyra72924.1;Parent=Phyra72924;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 1201631 1203390 . - . ID=Phyra72925;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000367;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1201631 1203390 . - . ID=Phyra72925;Parent=Phyra72925;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1201631 1202272 . - 0 ID=Phyra72925;Parent=Phyra72925;rank=5 scaffold_1 . exon 1201631 1202272 . - . ID=Phyra72925.5;Parent=Phyra72925;constitutive=1;rank=5 scaffold_1 . CDS 1202353 1202631 . - 0 ID=Phyra72925;Parent=Phyra72925;rank=4 scaffold_1 . exon 1202353 1202631 . - . ID=Phyra72925.4;Parent=Phyra72925;constitutive=1;rank=4 scaffold_1 . CDS 1202720 1202971 . - 0 ID=Phyra72925;Parent=Phyra72925;rank=3 scaffold_1 . exon 1202720 1202971 . - . ID=Phyra72925.3;Parent=Phyra72925;constitutive=1;rank=3 scaffold_1 . CDS 1203080 1203229 . - 0 ID=Phyra72925;Parent=Phyra72925;rank=2 scaffold_1 . exon 1203080 1203229 . - . ID=Phyra72925.2;Parent=Phyra72925;constitutive=1;rank=2 scaffold_1 . CDS 1203328 1203390 . - 0 ID=Phyra72925;Parent=Phyra72925;rank=1 scaffold_1 . exon 1203328 1203390 . - . ID=Phyra72925.1;Parent=Phyra72925;constitutive=1;rank=1 scaffold_1 . biological_region 1205608 1205610 0.999 - . logic_name=eponine scaffold_1 . biological_region 1210950 1210956 0.999 - . logic_name=eponine scaffold_1 . biological_region 1211244 1211248 0.999 - . logic_name=eponine scaffold_1 . biological_region 1212955 1212959 0.999 - . logic_name=eponine scaffold_1 . biological_region 1213121 1213123 0.999 - . logic_name=eponine scaffold_1 . biological_region 1213532 1213538 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1207952 1209196 . + . ID=Phyra38840;biotype=protein_coding;external_name=gwEuk.1.339.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1207952 1209196 . + . ID=Phyra38840;Parent=Phyra38840;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1207952 1209196 . + 0 ID=Phyra38840;Parent=Phyra38840;rank=1 scaffold_1 . exon 1207952 1209196 . + . ID=Phyra38840.1;Parent=Phyra38840;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1213155 1215701 . + . ID=Phyra38850;biotype=protein_coding;external_name=gwEuk.1.349.1;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1213155 1215701 . + . ID=Phyra38850;Parent=Phyra38850;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1213155 1215701 . + 0 ID=Phyra38850;Parent=Phyra38850;rank=1 scaffold_1 . exon 1213155 1215701 . + . ID=Phyra38850.1;Parent=Phyra38850;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1209305 1210435 . - . ID=Phyra71057;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000037;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1209305 1210435 . - . ID=Phyra71057;Parent=Phyra71057;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1209305 1210435 . - 0 ID=Phyra71057;Parent=Phyra71057;rank=1 scaffold_1 . exon 1209305 1210435 . - . ID=Phyra71057.1;Parent=Phyra71057;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1210968 1211981 . + . ID=Phyra71058;biotype=protein_coding;external_name=fgenesh1_pm.C_scaffold_1000038;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1210968 1211981 . + . ID=Phyra71058;Parent=Phyra71058;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1210968 1211981 . + 0 ID=Phyra71058;Parent=Phyra71058;rank=1 scaffold_1 . exon 1210968 1211981 . + . ID=Phyra71058.1;Parent=Phyra71058;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1204612 1205664 . - . ID=Phyra93395;biotype=protein_coding;external_name=C_scaffold_1000172;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1204612 1205664 . - . ID=Phyra93395;Parent=Phyra93395;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1204612 1204876 . - 0 ID=Phyra93395;Parent=Phyra93395;rank=3 scaffold_1 . exon 1204612 1204876 . - . ID=Phyra93395.3;Parent=Phyra93395;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 1204916 1205382 . - 0 ID=Phyra93395;Parent=Phyra93395;rank=2 scaffold_1 . exon 1204916 1205382 . - . ID=Phyra93395.2;Parent=Phyra93395;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 1205446 1205664 . - 0 ID=Phyra93395;Parent=Phyra93395;rank=1 scaffold_1 . exon 1205446 1205664 . - . ID=Phyra93395.1;Parent=Phyra93395;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1206078 1207435 . - . ID=Phyra93396;biotype=protein_coding;external_name=C_scaffold_1000173;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1206078 1207435 . - . ID=Phyra93396;Parent=Phyra93396;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1206078 1206330 . - 0 ID=Phyra93396;Parent=Phyra93396;rank=7 scaffold_1 . exon 1206078 1206330 . - . ID=Phyra93396.7;Parent=Phyra93396;constitutive=1;ensembl_phase=2;rank=7 scaffold_1 . CDS 1206378 1206592 . - 0 ID=Phyra93396;Parent=Phyra93396;rank=6 scaffold_1 . exon 1206378 1206592 . - . ID=Phyra93396.6;Parent=Phyra93396;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_1 . CDS 1206675 1206740 . - 0 ID=Phyra93396;Parent=Phyra93396;rank=5 scaffold_1 . exon 1206675 1206740 . - . ID=Phyra93396.5;Parent=Phyra93396;constitutive=1;rank=5 scaffold_1 . CDS 1206808 1206942 . - 0 ID=Phyra93396;Parent=Phyra93396;rank=4 scaffold_1 . exon 1206808 1206942 . - . ID=Phyra93396.4;Parent=Phyra93396;constitutive=1;rank=4 scaffold_1 . CDS 1207005 1207136 . - 0 ID=Phyra93396;Parent=Phyra93396;rank=3 scaffold_1 . exon 1207005 1207136 . - . ID=Phyra93396.3;Parent=Phyra93396;constitutive=1;rank=3 scaffold_1 . CDS 1207174 1207323 . - 0 ID=Phyra93396;Parent=Phyra93396;rank=2 scaffold_1 . exon 1207174 1207323 . - . ID=Phyra93396.2;Parent=Phyra93396;constitutive=1;rank=2 scaffold_1 . CDS 1207391 1207435 . - 0 ID=Phyra93396;Parent=Phyra93396;rank=1 scaffold_1 . exon 1207391 1207435 . - . ID=Phyra93396.1;Parent=Phyra93396;constitutive=1;rank=1 scaffold_1 . repeat_region 1219264 1219293 . ? . description=trf scaffold_1 . repeat_region 1224202 1224603 . ? . description=dust scaffold_1 ensembl protein_coding_gene 1220112 1223423 . + . ID=Phyra72932;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000374;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1220112 1223423 . + . ID=Phyra72932;Parent=Phyra72932;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1220112 1223052 . + 0 ID=Phyra72932;Parent=Phyra72932;rank=1 scaffold_1 . exon 1220112 1223052 . + . ID=Phyra72932.1;Parent=Phyra72932;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1223116 1223231 . + 0 ID=Phyra72932;Parent=Phyra72932;rank=2 scaffold_1 . exon 1223116 1223231 . + . ID=Phyra72932.2;Parent=Phyra72932;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1223301 1223423 . + 0 ID=Phyra72932;Parent=Phyra72932;rank=3 scaffold_1 . exon 1223301 1223423 . + . ID=Phyra72932.3;Parent=Phyra72932;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 1216230 1218758 . - . ID=Phyra93398;biotype=protein_coding;external_name=C_scaffold_1000175;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1216230 1218758 . - . ID=Phyra93398;Parent=Phyra93398;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1216230 1218758 . - 0 ID=Phyra93398;Parent=Phyra93398;rank=1 scaffold_1 . exon 1216230 1218758 . - . ID=Phyra93398.1;Parent=Phyra93398;constitutive=1;rank=1 scaffold_1 . biological_region 1225726 1225729 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1225528 1225989 . - . ID=Phyra72933;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000375;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1225528 1225989 . - . ID=Phyra72933;Parent=Phyra72933;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1225528 1225989 . - 0 ID=Phyra72933;Parent=Phyra72933;rank=1 scaffold_1 . exon 1225528 1225989 . - . ID=Phyra72933.1;Parent=Phyra72933;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1227972 1228667 . + . ID=Phyra72934;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000376;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1227972 1228667 . + . ID=Phyra72934;Parent=Phyra72934;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1227972 1228667 . + 0 ID=Phyra72934;Parent=Phyra72934;rank=1 scaffold_1 . exon 1227972 1228667 . + . ID=Phyra72934.1;Parent=Phyra72934;constitutive=1;rank=1 scaffold_1 . repeat_region 1230401 1240699 . ? . description=dust scaffold_1 . repeat_region 1242831 1243060 . ? . description=dust scaffold_1 ensembl protein_coding_gene 1240922 1241958 . - . ID=Phyra72935;biotype=protein_coding;external_name=fgenesh1_pg.C_scaffold_1000377;logic_name=jgi_phyra1 scaffold_1 ensembl transcript 1240922 1241958 . - . ID=Phyra72935;Parent=Phyra72935;biotype=protein_coding;logic_name=jgi_phyra1 scaffold_1 . CDS 1240922 1240970 . - 0 ID=Phyra72935;Parent=Phyra72935;rank=2 scaffold_1 . exon 1240922 1240970 . - . ID=Phyra72935.2;Parent=Phyra72935;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1241213 1241958 . - 0 ID=Phyra72935;Parent=Phyra72935;rank=1 scaffold_1 . exon 1241213 1241958 . - . ID=Phyra72935.1;Parent=Phyra72935;constitutive=1;ensembl_end_phase=2;rank=1